BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (910 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 1853 bits (4800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/910 (100%), Positives = 910/910 (100%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM
Sbjct: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV
Sbjct: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA
Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR
Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR
Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL
Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV
Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK
Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN
Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN
Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS
Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA
Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES
Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900

Query: 901 EIVDEAESTE 910
           EIVDEAESTE
Sbjct: 901 EIVDEAESTE 910


>gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 909

 Score = 1642 bits (4251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/907 (87%), Positives = 857/907 (94%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI+ +DEE EKGITSVSI +EMQNSYLTYAINVILGRAIPDLRDGLK VHRRILFGM
Sbjct: 1   MTEHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS+
Sbjct: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++GC+A+IDNPDIDLD +M+II GPDFPTGA+ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGSIVIRGV+HIEKT GDRE+I+VTEIPYQVNK+AMLEKIAELVREKRIVDI+DLR
Sbjct: 241 YATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI ILK 
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIEILKN 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEVV RRTKYLLNKARDRAHVLVGLAIAV+NLDEVVRIIRFSPNPE+ARRELMQR
Sbjct: 361 FIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +WNA DIKDLIDLIDDSSYTI SDG MYLSEVQTRAILELRLARLTGLGRDDIR+ELNSL
Sbjct: 421 NWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+CL+ILSSRSRLL IIKQEL  +KDELDTPRRT IV+GLLDMEDEDCIVREDMVV
Sbjct: 481 GTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTPRRTEIVDGLLDMEDEDCIVREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPLS+YRAQRRGGKGRSGVV R+EDFVTDLFIV+THT VLFFSSLGFVYK
Sbjct: 541 TVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIGSPQ+RGKALINILSL QGERITTIMP PEDESS ++LYVVFATK GNVRRN
Sbjct: 601 EKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NRSGKIAMKLD  DEILSVETC + ND+LLTTKLGQC+RF I+ +RVF+GRN
Sbjct: 661 KLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDVRVFSGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           SVGVRGI LA+ DQVISMAIVLHADADYDER+CYMK+M++ RRLI+ D +E   LKNDSS
Sbjct: 721 SVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDEGGVLKNDSS 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +EG ISEERC+ELK KEQFILTVSEKGFGKRTSSYDFRIS+R GKGI ATD SK++EIG 
Sbjct: 781 IEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGP 840

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++ FPVND DQIILVSDKGTLIRVPVN+IRIASR+TKGVVIFSTAKDERVVSVERI ES
Sbjct: 841 LISAFPVNDKDQIILVSDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDERVVSVERISES 900

Query: 901 EIVDEAE 907
           +I+D +E
Sbjct: 901 DIIDVSE 907


>gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
 gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
          Length = 934

 Score = 1324 bits (3427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/907 (70%), Positives = 758/907 (83%), Gaps = 1/907 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQK AH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  +M+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSIV+RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSIVMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F  N+VALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K+EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+++THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTIMP PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSVETCT+ +D+LLTT LGQC+RF +S +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISLA GD +ISM IV H DA+  ER  Y+K  +++RR  +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK  EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D++QI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVEDSNQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEA 906
            E  D+A
Sbjct: 901 PEGDDDA 907


>gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419]
 gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419]
          Length = 931

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/909 (69%), Positives = 757/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDACIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL SV+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS+KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909


>gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021]
 gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021]
          Length = 931

 Score = 1318 bits (3410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909


>gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
 gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
          Length = 931

 Score = 1316 bits (3406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909


>gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
 gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 927

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/908 (69%), Positives = 756/908 (83%), Gaps = 1/908 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKTPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A+ID+P I+L  LM+I+ GPDFPTGA+ILGR GI+ A
Sbjct: 181 GIAVGMATNIPPHNLSEVINGCIALIDDPAIELPELMQIVPGPDFPTGALILGRAGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVAFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ L+ILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSVETCT+ +D++LTT +GQC+RFP+S +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAI+ H +A+  ER  Y+K  +A+RR  +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G +S ER +ELK +EQF+LT+SE+GFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 ANGGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV  NDQI+LVSD G LIRVPV+ IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVEHNDQIMLVSDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAE 907
            +  DE E
Sbjct: 901 PDGEDEIE 908


>gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
 gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
          Length = 931

 Score = 1315 bits (3402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909


>gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42]
          Length = 941

 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/902 (70%), Positives = 753/902 (83%), Gaps = 1/902 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVATIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ LDILSSR R+  I+K EL +V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIRDYLDILSSRVRIQTIVKDELSAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSVETCT  +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L +GD++ISM IV H DA+  ER  Y+K  +A+RR I  D E+I  +  + 
Sbjct: 721 NSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SE 901
            E
Sbjct: 901 PE 902


>gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 941

 Score = 1308 bits (3384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/898 (70%), Positives = 751/898 (83%), Gaps = 1/898 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISLA GD++ISM IV H +A+  ER  Y+K  +  RRL +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLAGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK  EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 898


>gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
 gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
          Length = 930

 Score = 1302 bits (3369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/894 (69%), Positives = 751/894 (84%), Gaps = 1/894 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCA
Sbjct: 16  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++G+VMGK+HPHGNAAIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL
Sbjct: 76  RVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+I+GR+GI++AY TGRGS+++RG + 
Sbjct: 196 SEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIMGRSGIRSAYETGRGSVIMRGRAT 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDREQI++TE+PYQVNKA M+EK+AELV+EKRI  I+DLRDESDRQGYRVV+ELK
Sbjct: 256 IEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVELK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILNQ+YRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKY
Sbjct: 316 RDANAEVILNQIYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKY 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLAI+VAN+DEV+R+IR +P+P +AR ELM R W A D++ LI LID
Sbjct: 376 LLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRLID 435

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  DGT  LSE Q RAILELRLARLT LGRD+I +ELN +G EI E L+ILSSR 
Sbjct: 436 DPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSSRL 495

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K EL++++DE  TPRR+ IVEG  DM+DED I REDMVVTVSHLGY+KRVPL+ 
Sbjct: 496 RIMQIVKDELIAIRDEFGTPRRSEIVEGGPDMDDEDLISREDMVVTVSHLGYIKRVPLTT 555

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFV  LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++G
Sbjct: 556 YRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKG 615

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L  GERITTIMP PEDE++W  L V+F+T  G VRRNKL DF+Q+NR+GKIA
Sbjct: 616 KALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIA 675

Query: 676 MKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL+   DEILSVETCT ++D+LLTT LGQC+RFP+  +RVFAGRNSVGVRGI++A GD+
Sbjct: 676 MKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMADGDR 735

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +ISM IV H +A+  ER  Y+K  + +RR    D E+I  +  + + EG +SEER QELK
Sbjct: 736 IISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVAEEGELSEERYQELK 795

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E+F+LTVSEKG+GKR+SSYDFR S R GKGIRATD SK  EIG LVA FPV++ DQI+
Sbjct: 796 AREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPVDEGDQIM 855

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           LVSD G LIRVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E  +EAE+
Sbjct: 856 LVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDEEAEN 909


>gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4]
 gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4]
          Length = 930

 Score = 1301 bits (3367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/893 (69%), Positives = 747/893 (83%), Gaps = 1/893 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILFGM ++G++WNKKYVKCA
Sbjct: 15  IEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGMSELGIDWNKKYVKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++G+VMGK+HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL
Sbjct: 75  RVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 135 QKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A+I+NP IDL  LM+II GPDFPTGA+ILGR+GI++AY TGRGS+++RGV+ 
Sbjct: 195 VEVINGCIALIENPAIDLPELMQIIPGPDFPTGALILGRSGIRSAYETGRGSVIMRGVAR 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI  I+DLRDESDRQGYRVV+ELK
Sbjct: 255 IEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVELK 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ADVILNQLYRYT LQS F  NMVALNG KPE+ TL+ +L+AFV+FREEV+ RRTKY
Sbjct: 315 RDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVISRRTKY 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P+TAR +LM+R W A+D++ LI LID
Sbjct: 375 LLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMERRWPAADVESLIRLID 434

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  D T  LSE Q RAILELRLARLT LGRD+I  ELN +G EI + LDILSSR+
Sbjct: 435 DPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKIGAEISDYLDILSSRT 494

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I+  EL++V+DE  TPRR++I+EG  DM+DED I REDMVVTVSHLGY+KRVPL  
Sbjct: 495 RIQTIVVDELVAVRDEFGTPRRSQIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLVT 554

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RG
Sbjct: 555 YRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSRG 614

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L  GERITTIMP PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 615 KALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 674

Query: 676 MKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL+   DEILSVETCT ++D+LLTT LGQ +RFP+  +RVFAGRNS+GVRGISL   D+
Sbjct: 675 MKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGRNSIGVRGISLQPNDR 734

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +ISM I+ H DA+  +R  Y+K  + +RR    D ++I  +  +    G++SEER QELK
Sbjct: 735 IISMTILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEVGEIGDLSEERYQELK 794

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +EQF+LT+SE+G GKR+SSYDFR S R GKGIRATD SK  EIG LVA FPV D DQI+
Sbjct: 795 AREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIM 854

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           LVSD G LIRVPV+ IRIASRATKGV IF+TAKDE+VVSVERI E E  ++ E
Sbjct: 855 LVSDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINEPEGEEDGE 907


>gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
 gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 906

 Score = 1301 bits (3367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/885 (70%), Positives = 747/885 (84%), Gaps = 1/885 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL+KAAH LLD
Sbjct: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGCVA
Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NP I+L  +M+II GPDFPTGA+I+GR+GI++AY TGRGS+++RGV+ IE   GDRE
Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI++TE+PYQVNKA+M+EK+AELV+EKRI  I+DLRDESDRQGYRVVIELKR A+A+VIL
Sbjct: 241 QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKYLL KARDRA
Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAI+VAN+DEV+R+IR +P+P +AR +LM R W A D++ LI LIDD  + I  D
Sbjct: 361 HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRLARLT LGRD+I +ELN +G EI E LDILSSR R+  I+K E
Sbjct: 421 GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L+S++DE  TPRR++IVEG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGK
Sbjct: 481 LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  RDEDFV  LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++GKALIN+L L
Sbjct: 541 GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DE 683
             GERITTIMP PEDE++W  L V+F+T  G VRRNKL DF+Q+NR+GKIAMKLD   DE
Sbjct: 601 EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ILSVETCT  +D+LLTT LGQC+RFP+  +RVFAGRNSVGVRGI++A+GD++ISM IV H
Sbjct: 661 ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH 720

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +A+  ER  Y+K  + +RR    D E+I  +  + + EG +SEER QELK +E+F+LTV
Sbjct: 721 VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV 780

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S KGFGKR+SSYDFR S R GKGIRATD +K NEIG LVA FPV + DQI+LVSD G LI
Sbjct: 781 SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI 840

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           RVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E  DEAE+
Sbjct: 841 RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAEN 885


>gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512]
          Length = 919

 Score = 1299 bits (3361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/876 (71%), Positives = 742/876 (84%), Gaps = 1/876 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GD
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+V
Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+
Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I 
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG
Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L
Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR- 681
            L  GERITTI+P PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL+   
Sbjct: 602 PLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H DA+  +R  Y+K  +A+RR    D E+I  +  + + EG +S+ER +ELK +EQF+L
Sbjct: 722 GHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           TVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G 
Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI
Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 877


>gi|190891755|ref|YP_001978297.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
 gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
          Length = 919

 Score = 1298 bits (3360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/876 (71%), Positives = 741/876 (84%), Gaps = 1/876 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GD
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+V
Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+
Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I 
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG
Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L
Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR- 681
            L  GERITTI+P PEDE SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL+   
Sbjct: 602 PLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H DA+  ER  Y+K  +A+RR    D E+I  +  + + EG +S+ER +ELK +EQF+L
Sbjct: 722 GHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           TVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G 
Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI
Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 877


>gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 945

 Score = 1298 bits (3358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/898 (69%), Positives = 749/898 (83%), Gaps = 1/898 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA+ID+P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSVETCT+++D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L   D++ISM IV H DA+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER  EL+ +EQF+LTVS+KGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 898


>gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 945

 Score = 1295 bits (3350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/898 (69%), Positives = 746/898 (83%), Gaps = 1/898 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+ID+P I+L  L++II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K ELL+V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RD DFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL+   DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L   D++ISM IV H DA+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             EG +S++R  EL+ +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 IEEGQLSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LVA FP++D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI
Sbjct: 841 ELVAAFPIDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 898


>gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42]
          Length = 908

 Score = 1283 bits (3321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 619/869 (71%), Positives = 735/869 (84%), Gaps = 1/869 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAI
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDF
Sbjct: 61  YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC+A+I++P I+L
Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GDREQI++TEIPY
Sbjct: 181 PELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT L
Sbjct: 241 QVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIA
Sbjct: 301 QTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           VAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q
Sbjct: 361 VANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE  
Sbjct: 421 ARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDEFG 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
           TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RD
Sbjct: 481 TPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRD 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           EDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI
Sbjct: 541 EDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQ 692
           +P PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL+   DEILSVETCT 
Sbjct: 601 LPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTD 660

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+  ER 
Sbjct: 661 RDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERA 720

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
            Y+K  +A+RR I  D E+I  +  + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+
Sbjct: 721 AYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRS 780

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRI
Sbjct: 781 SSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRI 840

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901
           ASRATKGV IFSTAKDE+VVSVERI E E
Sbjct: 841 ASRATKGVTIFSTAKDEKVVSVERISEPE 869


>gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 935

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/888 (66%), Positives = 724/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +  +L D+ KDTVDF+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LMEII GPDFPTG +ILGR+GI +AY TGRGS+V+RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIILGRSGINSAYTTGRGSVVMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+  L+ +L+AFV FREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVVFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A+D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAADVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +TI  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMTIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DAD  ER  Y+K   A+RR     D ++I  +  +   E  ++EER QEL
Sbjct: 744 VISMAILHHVDADAAERSAYLKRSIAERRAQGADDADDIVVVGEEVGNETELNEERYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +EQ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVESSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI E++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISETD 911


>gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 933

 Score = 1227 bits (3175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/899 (66%), Positives = 725/899 (80%), Gaps = 4/899 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G  WN+KYVK 
Sbjct: 16  GIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAAHESGYHWNRKYVKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE R
Sbjct: 76  ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTEAR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH LL+D+ KDTVDF+  YD S  EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 136 LTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG  
Sbjct: 196 LGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGRV 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE+   DRE I++TE+PYQVNK++M+EK+AELVR+KRI  I+D+RDESDRQGYRVVIEL
Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ADVILNQLYR+T LQ+ F  NMVALNG KPE   L  +LKAFVAFREEV+ RRTK
Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLKAFVAFREEVITRRTK 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W + D++ LI LI
Sbjct: 376 FLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLI 435

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN++G EI + LDILSSR
Sbjct: 436 DDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSSR 495

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS
Sbjct: 496 ARVQQIVKDELAAVRDEFGTPRRTELTDGGSDMEDEDLIQREDMVVTVSHSGYIKRVPLS 555

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R
Sbjct: 556 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 615

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKALIN+L L QGERITTIMP PEDE+SW  LYV+FAT  G VRRN LSDF+Q+NR+GKI
Sbjct: 616 GKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRRNDLSDFVQVNRNGKI 675

Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   DEIL VETCT ++D+LLT   GQC+RF +  +RVF  RNSVGVRGI++A+ D
Sbjct: 676 AMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETD 735

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT--SLKNDS-SVEGNISEERC 790
           ++ISM+++ H DA   ER  Y+K  +A+RRL +    E    +L N+    E  +S+ R 
Sbjct: 736 RIISMSVIEHVDASPAERAAYLKRAAAERRLATETAGEEEEIALTNEEIGEETELSDSRY 795

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +ELK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK  EIG LVA FPV ++
Sbjct: 796 EELKAHEQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKAAEIGRLVATFPVGND 855

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E +  +E+E T
Sbjct: 856 DQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQADEESEET 914


>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10]
 gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94]
 gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1]
 gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1]
 gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether]
 gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1]
 gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
          Length = 934

 Score = 1226 bits (3173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 931

 Score = 1226 bits (3173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/899 (66%), Positives = 723/899 (80%), Gaps = 4/899 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+   + G  WN+KYVK 
Sbjct: 16  GIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE R
Sbjct: 76  ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH LL+D+ KDTVDF+  YD S  EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 136 LTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG  
Sbjct: 196 LGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKV 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE+   DRE I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+RDESDRQGYRVVIEL
Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ADVILNQLYR+T LQ+ F  NMVALNG KPE  TL  +LKAFV+FREEV+ RRTK
Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTK 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LI
Sbjct: 376 FLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLI 435

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I +DGT  LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR
Sbjct: 436 DDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSR 495

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS
Sbjct: 496 ARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 555

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R
Sbjct: 556 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 615

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKALIN+L L QGERITTIMP PEDE+SW  L V+FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 616 GKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKI 675

Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   DEIL VETCT  +D+LLT   GQC+RF +  +RVF  RNSVGVRGI++A+ D
Sbjct: 676 AMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETD 735

Query: 734 QVISMAIVLHADADYDERICYMK---HMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           ++ISM+++ + DA   ER  Y+K            +G+ EEI     +   E  +S+ER 
Sbjct: 736 RIISMSVIENVDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERY 795

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           + LK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK  EIG LVA FPV ++
Sbjct: 796 EFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGND 855

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E +  +E+E T
Sbjct: 856 DQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 914


>gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 934

 Score = 1226 bits (3171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score = 1225 bits (3170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP IDL  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
 gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
          Length = 934

 Score = 1224 bits (3168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 934

 Score = 1224 bits (3168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840]
 gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840]
          Length = 934

 Score = 1224 bits (3168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TG GS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGHGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVIGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
 gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 922

 Score = 1224 bits (3166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308]
 gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457]
 gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1]
 gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA
           gyrase C-terminal repeat, beta-propeller [Brucella
           melitensis biovar Abortus 2308]
 gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457]
 gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90]
          Length = 922

 Score = 1223 bits (3165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915]
 gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915]
          Length = 922

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 934

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1]
 gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1]
          Length = 934

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEI YQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 922

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99]
          Length = 922

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68]
 gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 922

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  D+ILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13]
 gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
 gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
          Length = 934

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/888 (66%), Positives = 721/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+ A  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDAD 911


>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
 gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
 gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 922

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ STHT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33]
          Length = 934

 Score = 1222 bits (3161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD  K +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94]
          Length = 934

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 24  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 84  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNI  HNL
Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911


>gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1]
 gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1]
          Length = 929

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/893 (66%), Positives = 719/893 (80%), Gaps = 2/893 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E   I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G  WN+K
Sbjct: 10  DEPDDIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASYESGYHWNRK 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   +VMGKYHPHG+A+IYDAL RMAQDWS+R+ LI+GQGNFGS+DGDPPAA RY
Sbjct: 70  YVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSIDGDPPAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K AH LL+D+ KDTVDF+  YDG+  EP +L AR+PN+LVNG GGIAVGMATNI
Sbjct: 130 TEARLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSGGIAVGMATNI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GCVA+IDNP + L  L+EII GPDFPTG +ILGR+GI +AYATGRGS+V+
Sbjct: 190 PPHNLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIILGRSGIHSAYATGRGSVVM 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE+   +RE I++TE+PYQVNKA M+EK+AELVREKRI  I+D+RDESDRQGYRV
Sbjct: 250 RGKTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIRDESDRQGYRV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+VILNQLYR+T LQ+ F  NMVALNG KPE   L+ +L+AFVAFREEVV 
Sbjct: 310 VIELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLLDMLRAFVAFREEVVT 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKYLL K R+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ L
Sbjct: 370 RRTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMERRWPAQDVESL 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I LI D  + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI++ LDI
Sbjct: 430 ILLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIQDYLDI 489

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LSSR+R+ GI+K EL++V+DE  TPRRT I EG  DMEDED I REDMVVTV+H GY+KR
Sbjct: 490 LSSRARVQGIVKDELIAVRDEFGTPRRTEITEGGADMEDEDLIPREDMVVTVTHKGYIKR 549

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPLS+YRAQ RGGKGRSG+  +DEDFVT LF+ +THT +LFFSS G VYKEKVWRLP+G+
Sbjct: 550 VPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYKEKVWRLPVGT 609

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           PQ+ GK L N+L L +GERIT+IMP PEDE SW  L V+FAT  G VRRNKLSDF Q+NR
Sbjct: 610 PQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFATTRGTVRRNKLSDFTQVNR 669

Query: 671 SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GKIAMKLD   DEIL+V TCT+++D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+L
Sbjct: 670 NGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGRNSIGVRGINL 729

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI-SEE 788
             GD+VISMAIV H DA   ER  Y+K  +A+RRL +G  EE  +L N+   E  + S E
Sbjct: 730 PDGDKVISMAIVGHVDATPAERAAYLKQAAAERRLSNGSDEEEIALTNEEVGEETVLSPE 789

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R +ELK +EQF+LTVSE G+GKR+SSYDFR+  R GKGIRATDVSK  EIG+L+A FPV 
Sbjct: 790 RYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEIGSLIAAFPVA 849

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             DQI+LVS+ G +IRVPV  IRIASRATKGV IF+TA  ERVVSV+RI E +
Sbjct: 850 PEDQIMLVSNAGQIIRVPVTGIRIASRATKGVTIFNTADGERVVSVDRISEPQ 902


>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
 gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
 gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
 gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 922

 Score = 1221 bits (3159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 922

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD  K +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
 gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
          Length = 945

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/887 (66%), Positives = 714/887 (80%), Gaps = 4/887 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M + G  WN+KYVK 
Sbjct: 14  GIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMHEGGYHWNRKYVKS 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +RI G+VMGKYHPHG+ +IYDA+ RMAQ WS+  +LI+GQGNFGS+DGDPPAA RYTE R
Sbjct: 74  SRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSIDGDPPAAMRYTESR 133

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH +++D+ KDTVDF+  YD S +EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 134 LAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAGGIAVGMATNIPPHN 193

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A++DNP IDL  LM+II GPDFPT  +ILG+ GI+ A+ TGRGS+++RG  
Sbjct: 194 LVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIILGQAGIRQAFETGRGSVIMRGKV 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+E    DRE I++TE+PYQVNK++M+EK+AELVR+KRI  I+DLRDESDRQGYRVVIEL
Sbjct: 254 HVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLRDESDRQGYRVVIEL 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ADVI+NQLYRYT LQS F VNMVALNG KPE   LI +LKAFV+FRE+V+ RRTK
Sbjct: 314 KRDANADVIINQLYRYTPLQSSFGVNMVALNGGKPELMNLIDMLKAFVSFREDVITRRTK 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM R W A D++ LI LI
Sbjct: 374 YLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTRRWPAMDVEVLIRLI 433

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +EL  +G EIK+ L+IL SR
Sbjct: 434 DDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKIGEEIKDFLEILGSR 493

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+  I+K EL++V+DE   PRRT I EG  DM+DED I REDMVVTVSH GY+KRVPL+
Sbjct: 494 IRVQQIVKDELIAVRDEFGVPRRTVIAEGGPDMDDEDLIAREDMVVTVSHAGYIKRVPLA 553

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+P +R
Sbjct: 554 TYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPTSR 613

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKALIN+L L +GERIT+IMP PEDE+S   L V+F+TK G VRRNKLSDF+Q+NR+GKI
Sbjct: 614 GKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRNKLSDFVQVNRNGKI 673

Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKLDS  DEIL+VETC + +D+LLTT LGQC+RF +  +RVFAGRNSVGVRGI+L +GD
Sbjct: 674 AMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGRNSVGVRGINLGQGD 733

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLI---SGDTEEITSLKNDSSVEGNISEERC 790
            +ISM IV H DA+  ER  Y+K   A+RR      GD EE+  +  D+  +G +S+ER 
Sbjct: 734 TIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVGEDAVEDGELSDERY 793

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ELK +EQFILTVSEKG+GKR+SSY+FRIS R GKGIRATD SK  EIG L+A FPV   
Sbjct: 794 AELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAAFPVEPG 853

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQI++VSD G +IRVPV  IR+ASRATKGV IF+TAKDERVVSV+RI
Sbjct: 854 DQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSVDRI 900


>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
 gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
          Length = 922

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/888 (66%), Positives = 721/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+ A  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDAD 899


>gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 922

 Score = 1219 bits (3155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNI  HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
 gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
          Length = 922

 Score = 1219 bits (3154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/888 (66%), Positives = 721/888 (81%), Gaps = 2/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H D    ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899


>gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 923

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/897 (65%), Positives = 723/897 (80%), Gaps = 3/897 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    +L D+ KDTVDF+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+I+NP I L+ ++EII GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIILGRAGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+  L+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDILSSR 
Sbjct: 432 DPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMTIVKDEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DAD   R  Y+K   A+RR     D ++I  +  D   +  ++EE  QEL
Sbjct: 732 VISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGTDAELTEELYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI E++  DE   +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISEAD-SDEENGSE 907


>gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
 gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
          Length = 933

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/897 (66%), Positives = 723/897 (80%), Gaps = 4/897 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+   + G  WN+KYVK 
Sbjct: 16  GIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE R
Sbjct: 76  ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH LL+D+ K+TVDF+  YD S  EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 136 LTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +AYATGRGSIV+RG  
Sbjct: 196 LSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYATGRGSIVMRGKV 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE+   DRE I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+RDESDRQGYRVVIEL
Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ADVILNQLYR+T LQ+ F  NMVALNG KPE   L  +L+AFV+FREEV+ RRTK
Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLRAFVSFREEVITRRTK 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W + D++ LI LI
Sbjct: 376 FLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLI 435

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN++G EI + LDILSSR
Sbjct: 436 DDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSSR 495

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS
Sbjct: 496 ARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 555

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R
Sbjct: 556 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 615

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKALIN+L L QGERITTIMP PEDE+SW  L V+FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 616 GKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKI 675

Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   DEIL VETCT  +D+LLT   GQC+RF +  +RVF  RNSVGVRGI++A  D
Sbjct: 676 AMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQSRNSVGVRGITMAATD 735

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRL--ISGDTEEITSLKNDS-SVEGNISEERC 790
           ++ISM+++ H DA   ER  Y+K  +++RRL   +   EE  +L N+    E  +S+ R 
Sbjct: 736 RIISMSVIEHVDASPAERAAYLKRAASERRLAAETAGEEEEIALTNEEIGEETELSDSRY 795

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +ELK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK  EIG LVA FPV ++
Sbjct: 796 EELKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGND 855

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E +  +E E
Sbjct: 856 DQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEEIE 912


>gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 906

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/889 (66%), Positives = 716/889 (80%), Gaps = 4/889 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGK
Sbjct: 1   MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+
Sbjct: 61  YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+  YD S  EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A
Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   DRE
Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGNDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+RDESDRQGYRVVIELKR A ADVIL
Sbjct: 241 SIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F  NMVALNG KPE  TL  +LKAFV+FREEV+ RRTK+LL KARDRA
Sbjct: 301 NQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I +D
Sbjct: 361 HVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRINAD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR+R+  I+K E
Sbjct: 421 GTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVKDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L +V+DE  TPRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGK
Sbjct: 481 LAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RGKALIN+L L
Sbjct: 541 GRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DE 683
            QGERITTIMP PEDE+SW  L V+FAT  G VRRNKLSDF+Q+NR+GKIAMKL+   DE
Sbjct: 601 EQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           IL VETCT  +D+LLT   GQC+RF +  +RVF  RNSVGVRGI++A+ D++ISM+++ +
Sbjct: 661 ILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVIEN 720

Query: 744 ADADYDERICYMK---HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            DA   ER  Y+K            +G+ EEI     +   E  +S+ER + LK  EQ++
Sbjct: 721 VDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLKAHEQYV 780

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK  EIG LVA FPV ++DQI+LVSD G
Sbjct: 781 LTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLVSDGG 840

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           T+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E +  +E+E T
Sbjct: 841 TVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 889


>gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 902

 Score = 1216 bits (3145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 589/883 (66%), Positives = 719/883 (81%), Gaps = 2/883 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL 
Sbjct: 61  YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA
Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE
Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+L
Sbjct: 241 AIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRA
Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD  +T+  D
Sbjct: 361 HVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNED 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E
Sbjct: 421 NTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGK
Sbjct: 481 MIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RGKALIN+L L
Sbjct: 541 GRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683
            QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL D  DE
Sbjct: 601 QQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H
Sbjct: 661 ILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHH 720

Query: 744 ADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            DA   ER  Y+K   A+RR     D ++I  +  D   E  +SE+R QELK +E+ +LT
Sbjct: 721 VDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLT 780

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           VSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI+LVSD G L
Sbjct: 781 VSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQL 840

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           IRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 841 IRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 883


>gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
 gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
          Length = 927

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/890 (66%), Positives = 712/890 (80%), Gaps = 3/890 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K 
Sbjct: 15  GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKS 74

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSVDGDPPAA RYTECR
Sbjct: 75  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILG +G++ AY TGRGSI++R   
Sbjct: 195 LGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIILGLSGVRAAYETGRGSIIMRAKV 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLRDESDR GYRVVIEL
Sbjct: 255 EIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK
Sbjct: 315 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRRTK 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+  LI LI
Sbjct: 375 YLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKLI 434

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+SR
Sbjct: 435 DDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILASR 494

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ I+K EL ++++E  TPRRT    G  +ME ED I  EDMVVTVSH GY+KRVPL+
Sbjct: 495 VRIMCIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPLN 554

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+R
Sbjct: 555 TYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQSR 614

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 615 GRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQVNRNGKI 674

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRNSVGVRGI+LAKGD+
Sbjct: 675 AMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRNSVGVRGINLAKGDK 734

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSL-KNDSSVEGNISEERCQ 791
           VISM I+ H +A   ER  Y+K +  +RR    D   E+I +L + D   E  +++ER  
Sbjct: 735 VISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEEDGGAETELTDERYA 794

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG LVA FPV   D
Sbjct: 795 ELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQD 854

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           QI+LVSD G LIRVPV  IR A R+TKGV IF+TAK ERVVSVERI E E
Sbjct: 855 QIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERISEPE 904


>gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
 gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
          Length = 916

 Score = 1204 bits (3116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/899 (65%), Positives = 718/899 (79%), Gaps = 5/899 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K 
Sbjct: 4   GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSVDGDPPAA RYTECR
Sbjct: 64  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 124 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILGR+G+++AY TGRGSI++R   
Sbjct: 184 LSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAKV 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLRDESDR GYRVVIEL
Sbjct: 244 DIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK
Sbjct: 304 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVAFREEVVSRRTK 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+  LI LI
Sbjct: 364 YLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKLI 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+SR
Sbjct: 424 DDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILASR 483

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ I+K EL ++++E  TPRRT    G  +ME ED I  EDMVVTVSH GY+KRVPL+
Sbjct: 484 VRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPLN 543

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+R
Sbjct: 544 TYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQSR 603

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ALIN+L L QGERITTIMP PEDE+SW+ L ++FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 604 GRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRNGKI 663

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRNSVGVRGI+LAKGD+
Sbjct: 664 AMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAKGDK 723

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSL-KNDSSVEGNISEERCQ 791
           VISM I+ H +A   ER  Y+K +  +RR    D   E+I SL + D   E ++++ER  
Sbjct: 724 VISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERYA 783

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG LVA FPV   D
Sbjct: 784 ELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQD 843

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           QI+LVSD G LIRVPV  IR A R+TKGV IF+TA+ ERVVSVERI E E  D+  S E
Sbjct: 844 QIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPE--DDTRSLE 900


>gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1]
 gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1]
          Length = 931

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/888 (66%), Positives = 713/888 (80%), Gaps = 1/888 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K 
Sbjct: 15  GIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKPYRKS 74

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSVDGDPPAA RYTECR
Sbjct: 75  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D C+A+IDNPDI LD ++EII GPDFPTG +ILG +G+++AY TGRGSI++R   
Sbjct: 195 LGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIILGHSGVRSAYETGRGSIIMRAKV 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+T   R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLRDESDR GYRVVIEL
Sbjct: 255 DIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK
Sbjct: 315 KRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRRTK 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A+D+  LI LI
Sbjct: 375 YLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMERRWPAADVAPLIKLI 434

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I +D T  LSE Q RAILELRL RLT LGRD+I +ELN +G++I + L IL+SR
Sbjct: 435 DDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILASR 494

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           SR++ IIK EL  +++   TPRRT    G  +M+ ED I  EDMVVTVSH GY+KRVPLS
Sbjct: 495 SRIMSIIKDELNVLREAFATPRRTVFGFGSAEMDCEDLIAPEDMVVTVSHSGYIKRVPLS 554

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G VYKEKVWRLP+G+PQ+R
Sbjct: 555 TYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYKEKVWRLPLGTPQSR 614

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ALIN+L L QGERITTIMP PEDE+ W+ L V+FAT  G VRRNKLSDF+QINR+GKI
Sbjct: 615 GRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVRRNKLSDFVQINRNGKI 674

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRNSVGVRGI+LA  D+
Sbjct: 675 AMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPVVEVRVFAGRNSVGVRGINLANDDK 734

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGNISEERCQEL 793
           VISM I+ H +A   ER  Y+K +  +RR    D E++ +L + D +V+  ++E R  EL
Sbjct: 735 VISMTILEHVEATSVERSAYIKRVINERRAAGSDAEDLVTLDEEDEAVDTELTEGRYLEL 794

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG LVA FPV   DQI
Sbjct: 795 HAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQI 854

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV  IRIA R+TKGV IF+TA+ E+VVSVERI ESE
Sbjct: 855 MLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISESE 902



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 33/277 (11%)

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-----DCIVREDMVVT 541
            LD++ + +R  G +++  LS  D +   R  +I   L D EDE      C  R D+V+T
Sbjct: 645 ALDVMFATTR--GTVRRNKLS--DFVQINRNGKIAMKL-DEEDEILSVETCTERHDVVLT 699

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G   R P+     + R   GR+ V +R  +   D  ++S   ++L       V + 
Sbjct: 700 TAK-GQCIRFPV----VEVRVFAGRNSVGVRGINLANDDKVISM--TILEHVEATSVERS 752

Query: 602 KVWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLY-----VVFATKHG 655
              +  I   +A G    ++++L++  E + T +     E  +  L+     ++  ++ G
Sbjct: 753 AYIKRVINERRAAGSDAEDLVTLDEEDEAVDTEL----TEGRYLELHAREQMLLTVSEFG 808

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPI 710
             +R+   +F    R GK     D        ++++      ++ I+L +  GQ +R P+
Sbjct: 809 YGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDGGQLIRVPV 868

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
             IR+ AGR++ GV   + A+G++V+S+  +  ++ D
Sbjct: 869 EGIRI-AGRSTKGVTIFNTAEGEKVVSVERISESEDD 904


>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
          Length = 922

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/902 (64%), Positives = 720/902 (79%), Gaps = 1/902 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+ID+P+I LD ++EII GPDFPTG +ILGR+G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I E L ILSSR R++GI+K EL ++++E  TPRRT    G  +M +ED IV EDMVV
Sbjct: 481 GVDITEYLHILSSRLRIMGIVKDELSTLREEFVTPRRTVFGFGNAEMNNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+ W+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +R+F GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    DTE++  + +N+ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENED 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SE 901
            E
Sbjct: 901 PE 902



 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 120/273 (43%), Gaps = 21/273 (7%)

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED----EDCIVREDMVVTVS 543
           LD++ + +R  G +++  LS  D +   R  +I   L D ++    E C  R+D+V+T +
Sbjct: 646 LDVMFATTR--GTVRRNKLS--DFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTA 701

Query: 544 HLGYVKRVP-LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + G   R P + V     R   G  G+ M D D V  + I+  H          ++ +  
Sbjct: 702 N-GQCIRFPVIDVRIFVGRNSVGVRGINMVDGDKVISMTILE-HVEATSVERSAYIKRAI 759

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             R   G+        + I+  N+    T +      E +     ++  ++ G  +R+  
Sbjct: 760 NERRSAGADTED----VVIVDENEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSS 815

Query: 663 SDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +F    R GK     D        ++++      ++ I+L +  GQ +R PI  IR+ A
Sbjct: 816 YEFRISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRI-A 874

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           GR++ GV   + AKG++V+S+  +   + D ++
Sbjct: 875 GRSTKGVTIFNTAKGEKVVSVERISDPEDDANQ 907


>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 922

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/902 (64%), Positives = 722/902 (80%), Gaps = 1/902 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP+I LD ++EII GPDFPTG +ILGR+G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L ILSSR R++GI+K EL ++++E  TPRRT    G  +M++ED IV EDMVV
Sbjct: 481 GVDITDYLHILSSRLRIMGIVKNELSTLREEFVTPRRTVFGFGNAEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVF GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    DTE++  + +++ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDEDED 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVS+ G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SE 901
            E
Sbjct: 901 PE 902



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++ I+L +  GQ +R PI  IR+ AGR++ GV   + AKG++V+S+  +   + D ++
Sbjct: 851 QDQIMLVSNGGQLIRVPIEGIRI-AGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQ 907


>gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2]
 gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2]
          Length = 889

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/870 (66%), Positives = 706/870 (81%), Gaps = 2/870 (0%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY AL
Sbjct: 1   MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NY
Sbjct: 61  VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LM
Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNK
Sbjct: 181 ELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F
Sbjct: 241 ASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSF 300

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
             NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+
Sbjct: 301 GCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAI
Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRR
Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRR 480

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I  G  +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFV
Sbjct: 481 TEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFV 540

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           T LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP P
Sbjct: 541 TRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLP 600

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDI 696
           EDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+
Sbjct: 601 EDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDV 660

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K
Sbjct: 661 LLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLK 720

Query: 757 HMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              A+RR     D ++I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY
Sbjct: 721 RSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSY 780

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +F IS R GKGIRATD SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R
Sbjct: 781 EFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGR 840

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 841 STKGVTIFNTADGEKVVSVERISDADSDEE 870


>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
 gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
 gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
          Length = 928

 Score = 1191 bits (3080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/903 (64%), Positives = 718/903 (79%), Gaps = 8/903 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           + EH +S+      GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 7   LPEHDVST------GIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ KDTVDF+ NYDG   EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGCVA+IDNP+I +D ++ II GPDFPTG +ILG +G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR + +P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W AS++  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGR++I +ELN++
Sbjct: 421 RWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G +I + L IL+SRSR++ I+K EL ++++   TPRRT    G  +M+ ED IV EDMVV
Sbjct: 481 GEDIADYLGILASRSRIMDIVKSELSALRETFATPRRTVFGFGSAEMDCEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +D+DFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW  L ++FAT  G VRRN
Sbjct: 601 EKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDFIQ+NR+GKIAMKLD   DEILSVETCT+ +D++L T  GQC+RFP++ IRVF+GR
Sbjct: 661 KLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI++ +GD+VISM I+ H +A   ER  Y+K    +RR+   D E+I ++  D 
Sbjct: 721 NSMGVRGINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDG 780

Query: 780 -SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +++ER  EL   EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD+SK  EI
Sbjct: 781 EETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV + DQI+LVSD G LIRVPVN IRIA R+TKGV +F+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVERIS 900

Query: 899 ESE 901
           ESE
Sbjct: 901 ESE 903



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 123/275 (44%), Gaps = 24/275 (8%)

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE----DCIVREDMVVTVS 543
           LDI+ + +R  G +++  LS  D +   R  +I   L +  DE    +     D VV ++
Sbjct: 646 LDIMFATTR--GTVRRNKLS--DFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLIT 701

Query: 544 HLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
             G   R P++  R    R   G  G+ M + D V  + I+  H          ++ +  
Sbjct: 702 ANGQCIRFPVTDIRVFSGRNSMGVRGINMVEGDKVISMTILE-HVEATSVERSAYIKRAI 760

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRN 660
             R   GS         +IL++++    T +    E   E S +   ++  ++ G  +R+
Sbjct: 761 NERRVAGSDDE------DILTVDEDGEETEVELTDERYAELSAHEQMLLTVSEFGYGKRS 814

Query: 661 KLSDFIQINRSGK--IAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
              DF    R GK   A  L    EI   ++     + + I+L +  GQ +R P++ IR+
Sbjct: 815 SSYDFRISGRGGKGIRATDLSKAAEIGKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRI 874

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            AGR++ GV   + AKG++V+S+  +  ++ D ++
Sbjct: 875 -AGRSTKGVTVFNTAKGEKVVSVERISESENDTNQ 908


>gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
 gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
          Length = 923

 Score = 1185 bits (3066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/903 (63%), Positives = 718/903 (79%), Gaps = 2/903 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+T+DF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLY YT LQ+ F  N+VALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAH+LVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  L+ LIDD  + I  + T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SR R++GI+K EL ++++E   PRRT    G ++M++ED IV EDMVV
Sbjct: 481 GVDITDYLHILASRLRIMGIVKDELSTLREEFAAPRRTIFGFGNIEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKLD   D ILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KND 778
           NSVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    D E++  + +N 
Sbjct: 721 NSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRAAGADAEDVVIVDENG 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EI
Sbjct: 781 EGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV   DQI+LVSD G LIR+P+  IRIA R+TKGV IF+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVKAQDQIMLVSDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900

Query: 899 ESE 901
           + E
Sbjct: 901 DPE 903



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 124/278 (44%), Gaps = 30/278 (10%)

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-----EGLLDMEDEDCIVREDMVVTV 542
           LD++ + +R  G +++  LS  D +   R  +I      EG   +  E C  R+D+V+T 
Sbjct: 646 LDVMFATTR--GTVRRNKLS--DFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTT 701

Query: 543 SHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++ G   R P+   R    R   G  G+ M D D V  + I+  H          ++ + 
Sbjct: 702 AN-GQCIRFPVIDVRVFAGRNSVGVRGINMVDGDKVISMTILE-HVEATSVERSAYIKR- 758

Query: 602 KVWRLPIGSPQARGKALINILSLNQ-GERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
                 I   +A G    +++ +++ GE   T +    + E  +    L  V  ++ G  
Sbjct: 759 -----AINERRAAGADAEDVVIVDENGEGTETELTDERYAELAAREQMLLTV--SEFGYG 811

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISA 712
           +R+   +F    R GK     D        ++++      ++ I+L +  GQ +R PI  
Sbjct: 812 KRSSSYEFRISGRGGKGIRATDPTKTAEIGKLVAAFPVKAQDQIMLVSDGGQLIRIPIEG 871

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           IR+ AGR++ GV   + AKG++V+S+  +   + D ++
Sbjct: 872 IRI-AGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQ 908


>gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3]
          Length = 922

 Score = 1184 bits (3064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/902 (64%), Positives = 721/902 (79%), Gaps = 1/902 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LD+L+SR R++GI+K EL +++ E  TPRRT    G  +M++ED IV EDMVV
Sbjct: 481 GVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTPRRTIFGFGNAEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  +DEDFVT LF+ +THTSVLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L + ER+TTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVF GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFMGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR+   D  + +   +++ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDEDEE 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 EIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SE 901
            E
Sbjct: 901 PE 902


>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
          Length = 927

 Score = 1182 bits (3059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/904 (64%), Positives = 713/904 (78%), Gaps = 10/904 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K 
Sbjct: 15  GIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKS 74

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGS+DGDPPAA RYTECR
Sbjct: 75  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECR 134

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K +  LL D+ KDTVDF+ NYDG  +EP+VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 135 LEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSGGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDGC+A+ID+P I LD +++II GPDFPTG +ILG +GI++AY TGRGSI++R   
Sbjct: 195 LGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGSSGIRSAYETGRGSIIMRAKV 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  ++DLRDESDR GYRVVIEL
Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLRDESDRDGYRVVIEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ IL+AFV+FREEVV RRTK
Sbjct: 315 KREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRAFVSFREEVVSRRTK 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL +AR+RAHVLVGLAIAVAN+DE++ +IR + +P+ AR +LM+R W A DI  LI LI
Sbjct: 375 YLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMERRWLAVDIAPLIKLI 434

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  D T +LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+SR
Sbjct: 435 DDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLDILASR 494

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           SR++GI+K EL ++++   TPRRT    G  DM+ ED I  E+MVVTVSH GY+KRVPL+
Sbjct: 495 SRIMGIVKDELNALREVFATPRRTVFGFGSADMDSEDLIAPEEMVVTVSHSGYIKRVPLN 554

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R
Sbjct: 555 TYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSR 614

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ALIN+L L QGERITTIMP P+DE  W  L V+FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 615 GRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRNKLSDFVQVNRNGKI 674

Query: 675 AMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMK  +  DEILSVETCT+ +D++LTT  GQC+RFP+S +RVF GR+S+GVRGI++   D
Sbjct: 675 AMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGRHSMGVRGINMGDSD 734

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE---ERC 790
           +VISM I+ H +A   ER  Y+K + ++RR    D E+I  +  D   E  ++E   ER 
Sbjct: 735 KVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDI--VIGDEESEATVTELTDERY 792

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL   EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV   
Sbjct: 793 MELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEIGKLVAAFPVEAQ 852

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI----VDEA 906
           DQI+LVSDKG LIRVPVN IRIA R+TKGV IF+TAK E+VVSVERI E E+     DE 
Sbjct: 853 DQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERISEPEVNASEPDEE 912

Query: 907 ESTE 910
           ES +
Sbjct: 913 ESEQ 916


>gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse]
 gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse]
          Length = 925

 Score = 1182 bits (3058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/888 (65%), Positives = 709/888 (79%), Gaps = 1/888 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K 
Sbjct: 15  GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLAFNKPYRKS 74

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSVDGDPPAA RYTECR
Sbjct: 75  AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD C+A+ID+P+I LD ++EII GPDFPTG +ILG +GI++AY TGRGSI++R   
Sbjct: 195 LGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIILGHSGIRSAYETGRGSIIMRAKV 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLRDESDR GYRVVIEL
Sbjct: 255 DIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK
Sbjct: 315 KKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRRTK 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+RAHVLVGLA+AVAN+DE++ +IR + +P+ AR +LM+R W A+D+  LI LI
Sbjct: 375 YLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLMERRWLAADVASLIKLI 434

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +G++I + L IL+SR
Sbjct: 435 DDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLHILASR 494

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           SR++ I+K EL  +++   TPRRT    G  +M+ ED I  EDMVVTVSH GY+KRVPL+
Sbjct: 495 SRIMSIVKDELNVLREAFATPRRTIFGFGSAEMDCEDLIAPEDMVVTVSHSGYIKRVPLN 554

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G VYKEKVWRLPIG+PQ+R
Sbjct: 555 TYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVLFFSTRGIVYKEKVWRLPIGTPQSR 614

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 615 GRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQVNRNGKI 674

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +R+FAGRNSVGVRGI+L  GD+
Sbjct: 675 AMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRIFAGRNSVGVRGINLTNGDK 734

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGNISEERCQEL 793
           VISM ++ H +A   ER  Y+K +  +RR    D E+I  L +ND   E  +++ER  EL
Sbjct: 735 VISMTLLEHVEATSVERSAYIKRVIHERRAAGADAEDILVLDENDVGTETELTDERYAEL 794

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +EQ +LT+SE G+GKR+SSY+FRIS R GKGIRATD SK  EIG LVA FPV   DQI
Sbjct: 795 NAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQI 854

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +LVSD G LIRVPV+ IRI  R+TKGV IF+TA+ ++VVSVERI ESE
Sbjct: 855 MLVSDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSVERISESE 902


>gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
 gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score = 1176 bits (3043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/897 (63%), Positives = 717/897 (79%), Gaps = 8/897 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A
Sbjct: 17  IRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTECRL
Sbjct: 77  RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 QKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +A+++NP + L+ L+EII GPDFPTG +ILGR+GI++AY TGRGS+V+RG   
Sbjct: 197 GEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIILGRSGIRSAYETGRGSVVMRGKVE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    RE ++V+EIPYQVNKA M+EKIAELVREKRI  I+D+RDESDR G RVVIELK
Sbjct: 257 VEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDIRDESDRLGMRVVIELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A ADVILNQLYR+++LQ+ F  NMVALNG +PE+  L  +LKAF+AFREEV+ RRT++
Sbjct: 317 KDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQMLLSDMLKAFIAFREEVIGRRTRF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LMQR+W A D+  LI LID
Sbjct: 377 LLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQRNWPAMDVAPLILLID 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN LG EI + L+IL SR 
Sbjct: 437 DPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNKLGEEIADYLEILRSRP 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  II++ELL +++E  TPR+T IVEG  D+EDED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 497 RIQQIIREELLEIRNEFATPRKTEIVEGGADLEDEDLIQREDMVVTVSHTGYIKRVPLAT 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK KVWRLP+G P +RG
Sbjct: 557 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKMKVWRLPLGGPTSRG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+N+L L  GE+I++IMP PE+E SW +L V+FAT  G VRRNKLSDF Q+NR+GKIA
Sbjct: 617 KALVNLLPLEAGEQISSIMPLPENEDSWADLDVMFATTRGTVRRNKLSDFTQVNRNGKIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  D I+ V TCT+ +D+LLTT  GQC+RFP++ +RVFAGRNSVGVRGI+LA+ D +
Sbjct: 677 MKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFPVTDVRVFAGRNSVGVRGINLAEDDHL 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKNDSSVEGNISEERCQEL 793
           ISM+I+ H +AD +ER+ Y+K    +RRL+ G+TE+  +     ++  EG++S ER  E+
Sbjct: 737 ISMSILRHFEADAEERVTYLK----RRRLMRGETEDAGVEDEAEEAGAEGHLSLERYAEM 792

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQ ILTVSE G+GKRTSS+++R++ R GKGI A  V++ N  G LVA FPV D+DQI
Sbjct: 793 SAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMAVTRRN--GPLVAAFPVEDSDQI 850

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +LV+D G LIR PV+ IR+A RAT+GV++F+TA+DE+VV+VER+ E E  D    +E
Sbjct: 851 MLVTDGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVERVSEDEDGDTGAESE 907


>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 947

 Score = 1172 bits (3031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/912 (63%), Positives = 711/912 (77%), Gaps = 3/912 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  I++  E   GI S+SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAEDDITTPPERPTGIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+ +N+ Y K A + GEVMGKYHPHG+++IYDAL RMAQDWSLR  LIEGQGNFGS+
Sbjct: 61  HGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K +  LL D+ K+TV+F+ NYDG  QEPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE+VDGCVA+IDNP I L+ LM  I GPDFPTGA++LGR GI +A
Sbjct: 181 GIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVLGRAGILSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y+TGRGSI++RG +H+E    DRE IV+TE+P+QVNK+ M+EK+A+LVR+KRI  I+D+R
Sbjct: 241 YSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVV+ELKR AS+DVILNQLYR+T LQ+ F  NMVALNG +PE+ TL  +L A
Sbjct: 301 DESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALNGGRPEQMTLPDMLSA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F++FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R
Sbjct: 361 FISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W A D+  LI LIDD  + I  +GT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 AWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI+E L+ILSSR R+  IIK+EL++V+DE  TPRRT + EG  DM+DED I REDMVV
Sbjct: 481 GEEIREYLEILSSRVRVREIIKEELIAVRDEFATPRRTELSEGAADMDDEDLIPREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           TVSH GY+KRVPL+ YR+QRRGGKGR+G+ ++ DED VT LF+ +THT VLFFSS G VY
Sbjct: 541 TVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ SPQ+RGKALIN+L L +GERIT+I+P P D  +   L V+FAT  G VRR
Sbjct: 601 KEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF Q+NR+GKIAMKLD   DEIL+V TC++++D+LLT   GQC+RF  + +RVFAG
Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RNSVGVRGISL +GD+VISMAI+ H DA   ER  Y+K   A      GD     +++ +
Sbjct: 721 RNSVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEE 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            + +  I +ER   L   E+ ILTVSE G+GKR+SSY+FR+  R GKGIRATD S+ +EI
Sbjct: 781 GAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L+A FPV   DQI+LV+D+G LIRVPV  IR A RAT+GV IF TA  ERVVSVERI 
Sbjct: 841 GQLMAGFPVESGDQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADGERVVSVERIP 900

Query: 899 ESEIVDEAESTE 910
           + +  DEA   E
Sbjct: 901 D-QGADEAGEAE 911


>gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
 gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
          Length = 950

 Score = 1169 bits (3023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/881 (64%), Positives = 699/881 (79%), Gaps = 6/881 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+   + Y K A + 
Sbjct: 27  VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEVMGKYHPHG++AIYDAL RMAQDWSLR  LIEGQGN+GS+DGDPPAA RYTECRL+K 
Sbjct: 87  GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL D+ K+TVDF+ NYDG  QEPVVL A +PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGCVA+IDNP I L  +MEII GPDFPTGA++LG+ GI++AY+TGRGS+++RG  H E 
Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILLGKAGIQSAYSTGRGSLLMRGKVHTET 266

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             GDRE I+VTE+PYQVNKA M+EK+AELVR+KRI  I+D+RDESDR+GYRVV+ELKR A
Sbjct: 267 IRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRDA 326

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           SADVILNQLYR+T LQ+ F  NMVALNG KPE+ TL+ +L AFVAFRE+VV RRTKYLL 
Sbjct: 327 SADVILNQLYRFTPLQTSFGANMVALNGGKPEQLTLMDMLSAFVAFREDVVNRRTKYLLR 386

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R W+A D+  L+ LIDD  
Sbjct: 387 KARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDDPR 446

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + I   GT  LSE Q RAIL+LRL RLT LGRD+I +EL  +G EIK+ L+ILSSR+R++
Sbjct: 447 HRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTRVM 506

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK EL +++DE  TPRRT + EG  D+EDED I REDMVVTVSH GY+KRVPLSVYR+
Sbjct: 507 QIIKDELTAIRDEFATPRRTELSEGAADLEDEDLIPREDMVVTVSHGGYIKRVPLSVYRS 566

Query: 559 QRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           QRRGGKGRSG+ ++ DED VT LF+ +THT VLFFSS G VYKEKVWRLP+ +PQ RGKA
Sbjct: 567 QRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLTTPQGRGKA 626

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+N+L L + ERIT+I+P P +E +     V+FAT  G VRRNKLSDF  +NR+GKIAMK
Sbjct: 627 LVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMK 686

Query: 678 L-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           L D +D IL V TC++++D+LLT   GQC+RFP + +RVFAGRNSVGVRGISL K + V+
Sbjct: 687 LDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVV 746

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SMAI+ H DA  +ER  Y+K     RR + GDT   +    ++  +  I +ER  EL  +
Sbjct: 747 SMAILRHVDASAEERATYLK----MRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAR 802

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ILTVSE G+GKR+SSY+FR S R GKGIRATD ++++++GALVA FPV + DQ++LV
Sbjct: 803 EEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLV 862

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D+G +IRVPV+ I +  RAT GV IF TA  ERVVSVERI
Sbjct: 863 TDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVSVERI 903


>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
 gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
          Length = 940

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/883 (62%), Positives = 693/883 (78%), Gaps = 7/883 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A
Sbjct: 21  IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTECRL
Sbjct: 81  RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 141 EKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +A+++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY TGRGS+ +R    
Sbjct: 201 GEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMILGRSGIRSAYETGRGSVPMRAKVD 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+   DR  ++VTEIPYQVNK+ M+EKIAE+VR+KR+  I+D+RDESDR G RVVIELK
Sbjct: 261 TEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRDESDRSGMRVVIELK 320

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DV+LNQLYR++ LQ+ F  NMVALNG KPE+  L  +LKAFVAFREEV+ RRT+Y
Sbjct: 321 RDAVPDVVLNQLYRFSQLQTSFGANMVALNGGKPEQMNLSDMLKAFVAFREEVIQRRTRY 380

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL K RDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W A D++DLI LID
Sbjct: 381 LLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMERNWPARDVEDLIRLID 440

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LSE Q RAIL+LRL RLT +GRD+I  ELN +G EI + LDIL SR+
Sbjct: 441 DPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAEISDYLDILRSRA 500

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I++ E+L +++E  TPRRT I+EG  D ++ED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 501 RIQEIVRNEMLEIREEFATPRRTEIIEGGADFDEEDLIQREDMVVTVSHGGYIKRVPLAT 560

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KVWRLP+G P +RG
Sbjct: 561 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPTSRG 620

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+N+L L QGE+IT+I+P PEDE +W NL V+FAT  G VRRNKLSDF+ INR+GKIA
Sbjct: 621 KALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLSDFVNINRNGKIA 680

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D I+ V+TC++ +DI+LTT  GQC+RFP + +RVFAGRNSVGVRGI LA GD++
Sbjct: 681 MKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVGVRGIRLADGDRI 740

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-DSSVEGNISEERCQELK 794
           ISM I+ H D D +ER  Y+K   A R    G+ +E  +  + D  V G +S+ER  E+ 
Sbjct: 741 ISMQILHHIDVDAEERAAYLKLSRAMR----GEADENGAAADEDGVVAGELSQERYAEMS 796

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V+  N  G L+A FPV D+DQI+
Sbjct: 797 AAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRN--GGLIASFPVEDSDQIM 854

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LV+D G LIR PV  IRIA RAT+GV+IF TA+DE+VV+VE I
Sbjct: 855 LVTDGGQLIRCPVEGIRIAGRATQGVIIFKTAEDEKVVAVEGI 897


>gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060]
 gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060]
          Length = 911

 Score = 1146 bits (2964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/886 (62%), Positives = 695/886 (78%), Gaps = 6/886 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   ++KYVK A
Sbjct: 19  IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPDRKYVKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG+YHPHG+ +IYDAL RMAQD+++R++L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 79  RIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDGDPPAAMRYTESRL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL+D+ K+TVDF PNYD S  EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 139 AKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+ID+P + ++AL EII GPDFPTG +ILGR G + AY TGRGS+V+R  SH
Sbjct: 199 GEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLILGRAGTRAAYMTGRGSVVMRAKSH 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   +RE +V TEIPYQVNKA+++EKIA+LVREKRI  +ADLRDESDR G R+V+ELK
Sbjct: 259 VEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDESDRDGMRIVVELK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +++AF+ FREEVV RRTK+
Sbjct: 319 RDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQAFIDFREEVVSRRTKF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR  LM R W A+DI  LI L+D
Sbjct: 379 LLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDWPAADIAPLIALVD 438

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LSE Q RAIL+LRL RLT LGRD++ +EL  L  EI + LDIL SR+
Sbjct: 439 DPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDILRSRA 498

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+LGI+K EL  V+ E  TPR+T I +   ++EDED I REDMVVTVSH GY+KRVPLS 
Sbjct: 499 RILGIVKAELAEVRAEYATPRKTEIQDWDSNVEDEDLIQREDMVVTVSHAGYIKRVPLST 558

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YKEKVWRLP+ +P ARG
Sbjct: 559 YRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPLAAPNARG 618

Query: 616 KALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KAL+NIL L+Q GERITTIMP PEDE+SW  L V+FAT  GNVRRNKLSDF+Q+NR+GKI
Sbjct: 619 KALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFVQVNRNGKI 678

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  D I+ VE CT+ +D+LLTT  GQC+RFP++ +RVF GR+S GVRGI+L K D+
Sbjct: 679 AMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTGVRGINLGKDDR 738

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQ 791
           VISM I+ H +A  +ER  Y++  +A RR      +  T+ + D   ++   ++ +ER  
Sbjct: 739 VISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAPEADGEETTASIDLGQERYI 798

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++   EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+  N  G LVA FPV  +D
Sbjct: 799 DMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNARN--GHLVASFPVEPSD 856

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           QI+LV++ G LIRVPV++IRI  RA++GV +F+TAKDERVVSVE I
Sbjct: 857 QIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEHI 902



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++  +  G  +R    DF   NR+GK        K++E   +V V    + D ++L +  
Sbjct: 652 VMFATASGNVRRNKLSDFVQVNRNGK-----IAMKLDEGDHIVHVEICTEADDVLLTTAA 706

Query: 860 GTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           G  IR PV ++R+   R + GV   +  KD+RV+S+  +R  E   E
Sbjct: 707 GQCIRFPVTDVRVFKGRDSTGVRGINLGKDDRVISMTILRHFEATPE 753


>gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
 gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
          Length = 913

 Score = 1143 bits (2956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/904 (62%), Positives = 696/904 (76%), Gaps = 12/904 (1%)

Query: 8   SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD E+ K        GI  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 2   SDSEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYA 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MHENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 122 VDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ II GPDFPTG +ILGR GI++
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIILGRQGIRS 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   I+    DRE IV++EIPYQVNKA+M+E+IAELVREK+I  I+DL
Sbjct: 242 AYHLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G+RVV+ELKR A  +V+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L 
Sbjct: 302 RDESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P  AR  LM 
Sbjct: 362 LFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ 
Sbjct: 422 RDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L IEI + LDIL SR+R+  IIK EL +VK E  TPRRT IVE   ++EDED I REDMV
Sbjct: 482 LAIEIADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW  L V+FAT  G VRR
Sbjct: 602 KEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF+GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLK 776
            S+GVRGI+LAKGD+VIS++I+ H DA   ER  Y+K   A RR  +G   + EE T   
Sbjct: 722 TSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEA 781

Query: 777 NDSS-VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++++  + ++ E R  E+   EQF+LTV+ +G+GKR+SS++FR+S R GKGIRATD +K+
Sbjct: 782 DEAAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKL 841

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA DE VVSVE
Sbjct: 842 GEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADDEHVVSVE 901

Query: 896 RIRE 899
            IRE
Sbjct: 902 HIRE 905


>gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
 gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
          Length = 941

 Score = 1141 bits (2951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/888 (62%), Positives = 695/888 (78%), Gaps = 6/888 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++  K Y K A +
Sbjct: 39  NISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLDHTKSYRKSAAV 98

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMGKYHPHG+++IYDAL RMAQD+++R +LI+GQGNFGS+DGD PAA RYTECRL +
Sbjct: 99  IGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSIDGDKPAAMRYTECRLAR 158

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLDD+ K+TVDF+ NYDGS +EP+VL ARYPN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 159 ISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAGGIAVGMATNIPPHNLGE 218

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DGC+A+ID PDI+L  LME+I GPDFPTG +ILGR GIK+AY TGRGS+++RG +HIE
Sbjct: 219 VIDGCLAMIDKPDIELAELMELIPGPDFPTGGMILGRAGIKSAYETGRGSVIMRGKAHIE 278

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +  DRE I++ E+PYQVNKA+M+EKIAELVR+KRI  I+ +RDESDRQGYRVVIE+KR 
Sbjct: 279 TSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAVRDESDRQGYRVVIEVKRD 338

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A AD++LNQLYRYT LQS F  N+VALNG KPE+  L+ +L+AFV FREEVV RRTK+LL
Sbjct: 339 AVADIVLNQLYRYTPLQSSFGCNLVALNGGKPEQMNLVDMLRAFVGFREEVVTRRTKFLL 398

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NK R RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD 
Sbjct: 399 NKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLMERRWPAKDVAPLIALIDDP 458

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R+
Sbjct: 459 RHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNLIGAEIADYLDILSSRARV 518

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L I++ EL  V++E   PRRT I++   + +DED I RE+MVVTV+H GY+KRVPL+ YR
Sbjct: 519 LDIVRTELGEVREEFANPRRTEIIDSGYEHDDEDLIAREEMVVTVTHGGYIKRVPLAAYR 578

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ RGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G  YK KVW+LP+  PQ RGKA
Sbjct: 579 AQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIAYKLKVWKLPLAQPQGRGKA 638

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L L  GE ITTIMP PEDE SW++L V+FAT  G VRRNKLSDF+Q+NR+GKIAMK
Sbjct: 639 MVNLLPLQAGETITTIMPLPEDEGSWDSLDVMFATTRGTVRRNKLSDFVQVNRNGKIAMK 698

Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           LD   D I+ VE C+  +D+LLT+  G  +RFP+  +RVF  RNSVGVRGI +   D VI
Sbjct: 699 LDDENDGIIGVEVCSASDDVLLTSSAGYGIRFPVDDVRVFNSRNSVGVRGIRMGASDHVI 758

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEERCQ 791
           SMAI+    A  +ER+ Y+K  SA RR  S D  E     + +   + +V  ++ EER  
Sbjct: 759 SMAIMRGFAATPEERVSYIKQASALRRAASADDGEDADLDVVADDEEVTVASSLPEERYI 818

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILT++++G+GKR+SSYDFR S R GKGI+ TDVSK  EIG LV  FPV D+D
Sbjct: 819 EMGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKGIKVTDVSKEGEIGQLVGAFPVEDSD 878

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           QI+LVS+ G LIRVPV+ IR ASR+TKGV +F TAKDE VV+VERI E
Sbjct: 879 QIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAVERISE 926


>gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
 gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
          Length = 904

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/903 (61%), Positives = 694/903 (76%), Gaps = 9/903 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + D      I  VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G E
Sbjct: 8   ADDSSSPADIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFE 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PA
Sbjct: 68  WNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGM
Sbjct: 128 AMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGAGGIAVGM 187

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILG+ GI++AY  GRG
Sbjct: 188 ATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIILGKQGIRSAYHLGRG 247

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVR+K+I  I+DLRDESDR 
Sbjct: 248 SIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDLRDESDRD 307

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           GYRVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L  FVAFRE
Sbjct: 308 GYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLTVFVAFRE 367

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D
Sbjct: 368 NVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMSRDWPAKD 427

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           ++ ++ LIDD  + I +DGT  LS  Q +AIL+LRL RLT LGRD+I +EL+ L +EI +
Sbjct: 428 VETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDKLAVEIAD 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL SR+R+ GI++ EL +VK+E  TPRRT IV+   ++EDED I REDMVVTVSH G
Sbjct: 488 YLDILRSRARVQGIVRDELTAVKNEFATPRRTVIVDQEGEVEDEDLIQREDMVVTVSHAG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRL
Sbjct: 548 YVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ +P ARGKALINIL + QGERITTIMP PEDESSW+ L V+FAT  GNVRRNKLSDF+
Sbjct: 608 PMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRRNKLSDFV 667

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + RSG IAMKLD  + I+ V+   + +D+LLT   GQC+RFP++ +RVF GR S+GVRG
Sbjct: 668 DVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGRTSMGVRG 727

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD++IS+ I+ H D + DER  Y++  +A RR   G  +E  +   +++    + 
Sbjct: 728 INLGDGDKLISLTILRHMDVNADERAAYLRRANAVRR--GGVEDEAGTDSEEATGAIELG 785

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+R  E+   EQF+LT+SE G+GKRTSSY++R + R GKGI A  V+  N  G LVA FP
Sbjct: 786 EQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRN--GKLVASFP 843

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V D+DQI+LV+DKG LIR PV +IRIA R+T+GV +F+T+ DERVVSVE      + DE 
Sbjct: 844 VEDSDQIMLVTDKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVE-----HLTDEG 898

Query: 907 EST 909
           E +
Sbjct: 899 EQS 901


>gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 913

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/889 (63%), Positives = 691/889 (77%), Gaps = 4/889 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G EWNK Y K 
Sbjct: 17  GIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD  AA RYTE R
Sbjct: 77  ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HN
Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D CVA+ID+P + +D L++II GPDFPTG +ILGR GI++AY  GRGSIV+RG  
Sbjct: 197 LGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIILGRQGIRSAYHLGRGSIVMRGKV 256

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I+    DRE IVV+EIPYQVNKA+M+E+IAELVREK+I  I+DLRDESDR+G+RVV+EL
Sbjct: 257 SIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISDLRDESDREGFRVVVEL 316

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +++LNQLY+YT LQ+ F  NMVAL+  +P+   L  +L  F+AFRE+VV RRTK
Sbjct: 317 KRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGRPQVMNLKDLLTLFIAFREQVVTRRTK 376

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P  AR  LM R W A D+  +I LI
Sbjct: 377 FLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKDVAAMITLI 436

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L IEI + LDIL SR
Sbjct: 437 DDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILRSR 496

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +R+  IIK EL +VK E  TPRRT IVE   ++EDED I REDMVVTVSH GYVKRVPLS
Sbjct: 497 ARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 556

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P AR
Sbjct: 557 TYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNAR 616

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKALINIL L+QGERITTIMP PEDESSW +L V+FAT  G VRRNKLSDF+ + RSG I
Sbjct: 617 GKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVRRNKLSDFVDVRRSGII 676

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL   + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF+GR S+GVRGI+LAKGD+
Sbjct: 677 AMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDR 736

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLKNDSS-VEGNISEERC 790
           VIS++I+ H DA   ER  Y+K   A RR  +G   + EE T   ++++  + ++ E R 
Sbjct: 737 VISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRY 796

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQF+LTV+  G+GKR+SS++FR+S R GKGIRATD +K+ EIG LVA FPV  +
Sbjct: 797 VEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMS 856

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA  E VVSVE IRE
Sbjct: 857 DQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADGEHVVSVEHIRE 905


>gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
 gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
          Length = 938

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/896 (61%), Positives = 697/896 (77%), Gaps = 10/896 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A
Sbjct: 20  IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTECRL
Sbjct: 80  RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH LLDD+ K+TVDF+ NYD S  EPVVL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 140 EKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +AV++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY T RGSIV+R    
Sbjct: 200 GEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMILGRSGIRSAYETARGSIVMRAKVD 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   DR  ++VTEIPYQVNK+ M+EKIAELVR+KRI  I+D+RDESDR G RVVIELK
Sbjct: 260 VEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRDESDRSGMRVVIELK 319

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DVILNQLYR++ LQ+ F  N+VALNG KPE+  L  +L+AFV+FREEV+ RRT+Y
Sbjct: 320 RDAVPDVILNQLYRFSQLQTSFGANIVALNGGKPEQMNLSDMLRAFVSFREEVIQRRTRY 379

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W A D++ LI LID
Sbjct: 380 LLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMERNWPAKDVESLILLID 439

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LSE Q RAIL+LRL RLT +GRD+I  ELN +G EI + L+IL SR+
Sbjct: 440 DPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAEISDYLEILRSRA 499

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I++ E+L +K E  TPRRT I+EG  D ++ED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 500 RIQEIVRNEMLEIKQEFATPRRTEIIEGGPDFDEEDLIQREDMVVTVSHGGYIKRVPLAT 559

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KVWRLP+G P +RG
Sbjct: 560 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPTSRG 619

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGE+IT+I+P PEDE SW NL V+FAT  G +RRNKLSDF+ INR+GKIA
Sbjct: 620 KALINLLPLEQGEQITSILPLPEDEDSWANLDVMFATIRGTIRRNKLSDFVNINRNGKIA 679

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D I+ V+TC++ +D++LTT  GQC+RFP++ +RVFAGRNSVGVRGI LA  D+V
Sbjct: 680 MKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTDVRVFAGRNSVGVRGIRLADEDRV 739

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS-VEGNISEERCQELK 794
           ISM I+ H D   +ER  Y+K   A R    G+ +E  +  ++   V G++ +ER  ++ 
Sbjct: 740 ISMQILHHIDVSAEERAAYLKLSRAMR----GEADENGNGADEEGVVAGDLPQERYAQMS 795

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V+  N  G L++ FPV D+ QI+
Sbjct: 796 AAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRN--GGLISSFPVEDSHQIM 853

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           LV+D G LIR PV+ IRIA RAT+GV++F TA DE+VV+VE I E   VDE +  E
Sbjct: 854 LVTDGGQLIRCPVDGIRIAGRATQGVIVFKTAADEKVVAVEGISE---VDEDDVLE 906


>gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278]
 gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp.
           ORS278]
          Length = 916

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/916 (61%), Positives = 698/916 (76%), Gaps = 19/916 (2%)

Query: 8   SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+E+EK         I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 2   SDKEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++Y AL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL K A  LLDDL KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 122 VDGDMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+ DNP + +D L +II GPDFPTG +ILGR GI++
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIILGRAGIRS 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+RG   I+    DRE I++TEIPYQVNKA+M+E+IAELVREK+I  I+DL
Sbjct: 242 AYHTGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G+RVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L+
Sbjct: 302 RDESDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGRPQTMNLKDLLQ 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  +I LIDD  + I  DGT  LS  Q +AIL+LRL RLT LGR++I +EL+ 
Sbjct: 422 RDWPAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+  I+K EL ++K E  TPRRT I E   +MEDED I REDMV
Sbjct: 482 LAVEIADYLDILRSRARVQDIVKTELSAIKAEFATPRRTVIAEQEGEMEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY KRVPLS YRAQRRGGKGR+G+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPI +P  RGKALINIL L QGERITTIMP PEDESSW NL V+FAT  GNVRR
Sbjct: 602 KEKVWRLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  +EI++V+ CT+ +D+LLT   GQC+RFP++ +RVF GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+LA+GD++IS+ I+ H +   DER  Y+K     RR +SG+T     ++ + 
Sbjct: 722 TSMGVRGIALAEGDKLISLTILRHVETTSDERTAYLK----MRRAMSGETAAEEPVETEG 777

Query: 780 SVEG----NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                    +S+ER  E+  +EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  
Sbjct: 778 EEAAAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNR 837

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE
Sbjct: 838 N--GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVE 895

Query: 896 RI-RESEIVDEAESTE 910
            I  E+E  + A  TE
Sbjct: 896 HIGEEAENGNGANGTE 911


>gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 913

 Score = 1136 bits (2939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/908 (61%), Positives = 699/908 (76%), Gaps = 18/908 (1%)

Query: 8   SDEEEEKG--------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+++EK         I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 2   SDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 122 VDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR+GI++
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIRS 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+DL
Sbjct: 242 AYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L 
Sbjct: 302 RDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I +EL+ 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + L+IL SR+R+  I+K EL +VK E  TPR+T IVE   ++EDED I REDMV
Sbjct: 482 LAVEIADYLEILRSRARVQTIVKDELGAVKAEFATPRKTVIVEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVRR
Sbjct: 602 KEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG------DTEEIT 773
            S+GVRGI+L+ GD+VIS++I+ H +A   ER  Y+K   A RR  +G      +T E+ 
Sbjct: 722 TSMGVRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEESEPIETPEVE 781

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + + D+S    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+
Sbjct: 782 AEEGDTSAA--LSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVN 839

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVS
Sbjct: 840 GRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVS 897

Query: 894 VERIRESE 901
           VERI E++
Sbjct: 898 VERIPETD 905


>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
 gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
          Length = 925

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/892 (61%), Positives = 698/892 (78%), Gaps = 8/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A
Sbjct: 17  IKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMNENGYEWNKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS+DGD  AA RYTECRL
Sbjct: 77  RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSIDGDRAAAMRYTECRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 EKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +AV+ NP + +  LM+I+ GPDFPTG +ILGR+GI++AY +GRGS+V+R    
Sbjct: 197 GEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIILGRSGIRSAYESGRGSVVMRSKVD 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   DR  ++V+EIPYQVNK++M+EKIAE VR+KRI  I+D+RDESDR G RVVIELK
Sbjct: 257 VEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDIRDESDRSGMRVVIELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DV+LNQLYRY+ LQ+ F  NMVALNG KPE+  L  ILKAF++FREEVV RRTK+
Sbjct: 317 RDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGKPEQLNLPDILKAFISFREEVVQRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAH+LVGL IAVAN+DEV+ +IR +P+P TAR +LM+R W A D++ LI LID
Sbjct: 377 LLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLMERDWPARDVEPLIRLID 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL+ +G EI + LDIL SR+
Sbjct: 437 DPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSKIGAEISDFLDILRSRA 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I++ E+L +K+E  TPR+T IV+G  D +DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 497 RIQDIVRGEMLEIKEEFATPRKTEIVDGGADFDDEDLIQREDMVVTVSHNGYIKRVPLAT 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KVWRLP+G P +RG
Sbjct: 557 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPISRG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGE+I++IMP PEDE SW NL V+F+T  G VRRNKLSDF QINR+GKIA
Sbjct: 617 KALINMLPLEQGEQISSIMPLPEDEESWANLDVMFSTVRGTVRRNKLSDFTQINRNGKIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D I++V TC++ +D++LTT  GQC+RFP+  +RVFAGRNSVGVRGI LA GD+V
Sbjct: 677 MKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGRNSVGVRGIRLADGDKV 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM I+ H DA+ +ER  ++K MS   R + G+ +E        +V+  +S+ER  E+  
Sbjct: 737 ISMQILHHMDAEAEERTAFLK-MS---RALRGEADENAGSDETGAVDAGLSQERYAEMSA 792

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V++ N  G LV+ FPV ++DQI+L
Sbjct: 793 AEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVTERN--GGLVSSFPVEESDQIML 850

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           V++ G LIR PV+ IRIA RAT+GV++F TA  E VV+VE I  SE+ DE +
Sbjct: 851 VTNGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGI--SEVDDEED 900


>gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/906 (61%), Positives = 690/906 (76%), Gaps = 14/906 (1%)

Query: 8   SDEEEEKG--------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+++EK         I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 2   SDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK+Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 122 VDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+ 
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRA 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I DL
Sbjct: 242 AYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L 
Sbjct: 302 RDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + L+IL SR+R+  I+K EL  VK E  TPRRT I E   ++EDED I REDMV
Sbjct: 482 LAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVRR
Sbjct: 602 KEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L+ GD VIS++I+ H +A   ER  Y+K   A RR  +G+  E        
Sbjct: 722 TSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEAE 781

Query: 780 SVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+  
Sbjct: 782 AEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSR 841

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSVE
Sbjct: 842 N--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVE 899

Query: 896 RIRESE 901
           RI E++
Sbjct: 900 RIPETD 905


>gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 913

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/906 (61%), Positives = 690/906 (76%), Gaps = 14/906 (1%)

Query: 8   SDEEEEKG--------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+++EK         I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 2   SDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK+Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 122 VDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+ 
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRA 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I DL
Sbjct: 242 AYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L 
Sbjct: 302 RDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + L+IL SR+R+  I+K EL  VK E  TPRRT I E   ++EDED I REDMV
Sbjct: 482 LAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVRR
Sbjct: 602 KEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L+ GD VIS++I+ H +A   ER  Y+K   A RR  +G+  E        
Sbjct: 722 TSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEAE 781

Query: 780 SVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+  
Sbjct: 782 AEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSR 841

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSVE
Sbjct: 842 N--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVE 899

Query: 896 RIRESE 901
           RI E++
Sbjct: 900 RIPETD 905


>gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
 gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
          Length = 914

 Score = 1133 bits (2931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/887 (62%), Positives = 690/887 (77%), Gaps = 8/887 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G    +KYVK A
Sbjct: 18  IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPERKYVKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG+YHPHG+ +IYDAL RMAQD+++RL+L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 78  RIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSIDGDPPAAMRYTESRL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL+D+ K+TVDF PNYD S  EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 138 AKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++GC+A+ID+P + ++ L EII GPDFPTG  ILGR G + AY TGRGS+++R  SH
Sbjct: 198 GEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQILGRAGTRAAYMTGRGSVIMRAKSH 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   +RE +V TEIPYQVNKA+++EKIAELVR+KRI  ++DLRDESDR G R+V+ELK
Sbjct: 258 VEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLRDESDRDGMRIVVELK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +++AF+ FREEVV RRTK+
Sbjct: 318 RDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQAFIDFREEVVSRRTKF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR  LM R W A DI  LI L+D
Sbjct: 378 LLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMARDWPAVDIAPLIALVD 437

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LS+ Q RAIL+LRL RLT LGRD++ +EL  L  EI + LDIL SR+
Sbjct: 438 DPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDILRSRA 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+LGI+K EL  V+ E  TPRRT I +    +EDED I REDMVVTVSH GY+KRVPLS 
Sbjct: 498 RILGIVKAELAEVRAEFATPRRTEIQDWDSTVEDEDLIQREDMVVTVSHAGYIKRVPLST 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YKEKVWRLP+ +P ARG
Sbjct: 558 YRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPLAAPNARG 617

Query: 616 KALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KAL+NIL L+  GERITTIMP PEDE+SW  L V+FAT  G+VRRNKLSDF+Q+NR+GKI
Sbjct: 618 KALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRRNKLSDFVQVNRNGKI 677

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  D I+ VE CT+ +D+LLTT  GQC+RFP++ +RVF GR+S GVRGI+L  GD+
Sbjct: 678 AMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTGVRGINLGSGDR 737

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK----NDSSVEGNISEERC 790
           VISM I+ H +A  +ER  Y++  +A RR  +G+  E+ +       +++   ++ +ER 
Sbjct: 738 VISMTILRHFEATPEERQAYLRRANADRR-ATGEAIELPATPEADGEETAASIDLDQERY 796

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             +   EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+  N  G LVA FPV  +
Sbjct: 797 IAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRN--GHLVASFPVETS 854

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQI+LV++ G LIRVPV++IRI  RA++GV +F+TAKDERVVSVE I
Sbjct: 855 DQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEHI 901


>gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
          Length = 905

 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/882 (62%), Positives = 684/882 (77%), Gaps = 4/882 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK Y K A
Sbjct: 17  IKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL
Sbjct: 77  RTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 QKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILGR GI++AY  GRGSIV+RG   
Sbjct: 197 GEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIILGRQGIRSAYHLGRGSIVMRGKVS 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    DRE IVV+EIPYQVNKA M+E+IAELVR+K+I  ++DLRDESDR+GYRVV+ELK
Sbjct: 257 IETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDLRDESDREGYRVVVELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L  FVAFRE VV RRTK+
Sbjct: 317 RDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLTVFVAFRENVVSRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+P TAR  LM R W A D++ ++ LID
Sbjct: 377 LLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMSRDWPARDVETMMMLID 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  DGT  LS  Q +AIL+LRL RLT LGRD+I  EL+ L +EI + LDIL SR+
Sbjct: 437 DPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDKLAVEIADYLDILRSRA 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I++ EL ++K+E  TPRRT I++   ++EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 497 RVQDIVRNELNAIKEEFATPRRTMIIDQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLST 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+  R+EDFV  LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARG
Sbjct: 557 YRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPSARG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALINIL + QGERITTIMP PEDESSW  L V+FAT  GNVRRNKLSDF+ + RSG IA
Sbjct: 617 KALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRRNKLSDFVDVRRSGIIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL   + I+ V+ C + +D+LLT   GQC+RFPI+ +RVF GR S+GVRGI+L +GD++
Sbjct: 677 MKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGRTSMGVRGITLGEGDRL 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           IS+ I+ H D   DER  Y++  +A RR   G  +E  +   +++    + E+R  E+  
Sbjct: 737 ISLTILRHMDVSADERAAYLRRANAVRR--GGADDEAGTDHEEATGAIELGEQRYVEMSA 794

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQF+LT+SE G+GKR+SSY++R + R GKGI A  V+  N  G L+  FPV+D+DQI+L
Sbjct: 795 NEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRN--GKLIGSFPVDDSDQIML 852

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+DKG LIR PV +IRI  R+T+GV +F+TA DERVVSVER+
Sbjct: 853 VTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERL 894


>gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
 gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
          Length = 913

 Score = 1131 bits (2925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/902 (62%), Positives = 690/902 (76%), Gaps = 4/902 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE   S +     GI  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   TEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQ +S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ I+ GPDFPTG +ILGR GI++AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIILGRQGIRSAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IAELVR+KRI  I+DLRD
Sbjct: 244 HLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVV+ELKR A  +V+LNQLYRYT LQ+ F  NMVAL+  +P+   L  +L  F
Sbjct: 304 ESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 364 IAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  +    DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 424 WPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + LDIL SR+R+  IIK EL +VK E  TPR+T I+E   ++EDED I REDMVVT
Sbjct: 484 IEIADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQ+RGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+ +P ARGKA+INIL L QGERITTIMP PEDESSW NL V+FAT  G VRRNK
Sbjct: 604 KVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP S +RVF+GR S
Sbjct: 664 LSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLKND 778
           +GVRGI+LA+GD+VIS++I+ H DA   ER  Y+K   A RR  +G   + EE T   ++
Sbjct: 724 MGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783

Query: 779 SS-VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           ++  + ++ E R  E+   EQF+LTV+ +G+GKR+SS++FR+S R GKGIRA+D +K+ E
Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGE 843

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA+ E VVSVE I
Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEGEHVVSVEHI 903

Query: 898 RE 899
           RE
Sbjct: 904 RE 905


>gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
 gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 915

 Score = 1130 bits (2922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/903 (62%), Positives = 698/903 (77%), Gaps = 17/903 (1%)

Query: 8   SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+E+EK         I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 2   SDQEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYS 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G   +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE +L K+A  LLDD+ KDTVDF+ NYD S +EP VL A++PN+LVNG 
Sbjct: 122 VDGDPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNL EV+D CVA+IDNP I +D L +II GPDFPTG +ILGR GI++
Sbjct: 182 GGIAVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIILGRAGIRS 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSI++RG   I+    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+DL
Sbjct: 242 AYHLGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVVIELKR A ADV+LNQLY++T LQ+ F+ NM+AL+G +P+  TL  +L 
Sbjct: 302 RDESDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGRPQTMTLKDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE VV RRTK+LLNKARDRAH+LVGLA+AVAN+DE++R+IR SPNP +AR  LM 
Sbjct: 362 IFVAFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ +I LIDD  + +  DGT+ LS  Q +AIL+LRL RLT LGR++I +EL+ 
Sbjct: 422 RDWPARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L IEI + L+IL SR+R+  IIK EL +VK E  TPRRT I+E   ++EDED I REDMV
Sbjct: 482 LKIEIADYLEILRSRARVQDIIKTELAAVKAEFGTPRRTAIIEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY KRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPI +P +RGKALINIL L QGERITTIMP PEDESSW NL V+FAT  GNVRR
Sbjct: 602 KEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  +EI++V+ CT+ +D+LLT   GQC+RFP++ +RVF GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+LA+GD+VIS++I+ H +   DER  Y+K     RR +SG+T     ++ + 
Sbjct: 722 TSMGVRGIALAEGDKVISLSILRHVETTSDERTAYLK----MRRAMSGETTTEEPVETEG 777

Query: 780 SVEG---NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   +S+ER  E+  +EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N
Sbjct: 778 EEAAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN 837

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE 
Sbjct: 838 --GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEH 895

Query: 897 IRE 899
           I E
Sbjct: 896 IGE 898


>gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score = 1125 bits (2910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/881 (62%), Positives = 677/881 (76%), Gaps = 6/881 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK+Y K AR  G+V+GK
Sbjct: 1   MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL K A  LLD
Sbjct: 61  YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D C+A
Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG   IE    DRE
Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRAAYQTGRGSIVMRGKVEIETVRKDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V+EIPYQVNKA M+E+IAELVREK+I  I DLRDESDR G+RVVIEL+R A  +V+L
Sbjct: 241 AIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLY++T LQ+ F  NMVAL G +P+   L  +L  FVAFRE+VV RRTK+LLNKARDRA
Sbjct: 301 NQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A+D+  +I LIDD  + +  D
Sbjct: 361 HILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNPD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LS  Q +AIL+LRL RLT LGR++I  EL+ L +EI + L+IL SR+R+  I+K E
Sbjct: 421 GTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVKTE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  VK E  TPRRT I E   ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK
Sbjct: 481 LGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+  P  RGKALINIL L
Sbjct: 541 GRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QGERITTIMP PEDE+SW+ L V+FAT  GNVRRNKLSDF+ + RSG IAMKLD  + I
Sbjct: 601 EQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAI 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR S+GVRGI+L+ GD VIS++I+ H 
Sbjct: 661 VDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHF 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQELKLKEQFI 800
           +A   ER  Y+K   A RR  +G+  E        + EG+    +S+ER  E+   EQF+
Sbjct: 721 EATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFV 780

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT+SE G+GKRTSS+++R + R GKGI A  V+  N  G LVA FPV D+DQI+LV+D G
Sbjct: 781 LTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRN--GKLVASFPVEDSDQIMLVTDNG 838

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            LIR PV  IR+A R+T+GV++F+TA DE+VVSVERI E++
Sbjct: 839 QLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETD 879


>gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 965

 Score = 1118 bits (2891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/898 (60%), Positives = 686/898 (76%), Gaps = 12/898 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  ++I DEM++SYL YA++VI+ RA+PD RDGLKPVHRRILF M + G +WNK Y 
Sbjct: 65  ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ +IYDAL RMAQD+S+RL L++GQGNFGSVDGDPPAA RYTE
Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL+D+ K+T+DF+ NYDG+ +EPVVL A  PN+LVNG  GIAVGMATNIP 
Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D C+A+IDNPDI +D L+E +  PDFPTG ++LGR G + AY TG+GS+V+RG
Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIMLGRQGARLAYHTGKGSVVVRG 304

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
               E+   DR+ I+++EIPYQVNKA+M+EKIA+LVREKRI  IADLRDESDR G RVV+
Sbjct: 305 RVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVVV 364

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R A  DV+LNQLYR++ LQ  F  NM+AL+  +PE   L   L+ FVAFREEV+ RR
Sbjct: 365 ELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGRPELMNLKQFLEIFVAFREEVISRR 424

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKARDRAHVLVGLAIAVAN+DEV+++IR +P+P +AR  LM R W A DI  LI 
Sbjct: 425 TKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPLIA 484

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LIDD  + +  DGT+ +SE Q RAILELRL RLT LGRD+I +EL  LG  I++ L IL 
Sbjct: 485 LIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSILR 544

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+R+L I++ EL ++K E  TPRRT I E   D EDED I REDMVVTVSH GY+KRVP
Sbjct: 545 SRARVLDIMRTELTAIKAEFATPRRTEIAESESDFEDEDLIQREDMVVTVSHQGYIKRVP 604

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGRSG+  +DEDFVT LF+ +THT +LFFSS G VYK KVWRLP  +PQ
Sbjct: 605 LSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLKVWRLPQSTPQ 664

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA+INIL L+ GE ITT+MP PEDE+SW++L+V+FAT+ G+VRRNKLSDF+QINR+G
Sbjct: 665 ARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKLSDFVQINRNG 724

Query: 673 KIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           KIAMK    D+ D I+ V+ CT+E+D+LLT   G+CVRFP++ +RVF+ R S GVRGI L
Sbjct: 725 KIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSRKSTGVRGIRL 784

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG------ 783
              D++I+M+I+ H D    E   Y+K  +A RR +SG+ EE  +   ++          
Sbjct: 785 GDDDKLIAMSIMRHVDVTPAEARAYLKQAAAMRRAVSGEGEEPEAEIVEAEEGEEEAAEE 844

Query: 784 -NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S ER  EL  +EQF+LTVSEKGFGKR+SSYD+R S R GKGI A  V+  N  G LV
Sbjct: 845 MTLSTERYSELGAREQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRN--GNLV 902

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           A FPV+  DQI+LV+D G LIR PV+++R A RAT+GV IF TA DERVVSVER+ E+
Sbjct: 903 ASFPVDVQDQIMLVTDAGQLIRCPVDDVRAAGRATQGVTIFRTAPDERVVSVERVEET 960


>gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 909

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/893 (62%), Positives = 681/893 (76%), Gaps = 7/893 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   +KKYVK A
Sbjct: 17  IRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 77  RVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAA  LL D+ KDTVDF+PNYD +  EP VL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 TKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D CVA+IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY  GRGSIV+RG   
Sbjct: 197 GEVIDACVALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVA 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    +RE +++TEIPYQVNKA M+E+IAELV+EK+I  I DLRDESDR GYRVVIELK
Sbjct: 257 IETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYR+T LQ+ F VNMVAL+  +P    L  +L  FV FRE VV RRTK+
Sbjct: 317 RDAVADVVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D++D++ LID
Sbjct: 377 LLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLID 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  DGT+ LS  Q RAIL+LRL RLT LGRD+IR+EL+ L  EI + LDIL SR 
Sbjct: 437 DPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRE 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+LGIIK EL  VK E  TPRRT I+E   ++EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 497 RVLGIIKTELAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSA 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGR+G+  RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARG
Sbjct: 557 YRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALINIL L QGERITTIMP PEDES+W NL V+FAT  GNVRRNKLSDF+ + RSG IA
Sbjct: 617 KALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF GR S+GVRGI+L +GD+V
Sbjct: 677 MKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKV 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           IS+AI+ H +   DER  Y+K   A     + +     +   ++S    +++ER  E+  
Sbjct: 737 ISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSA 796

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  G LVA FPV D DQI+L
Sbjct: 797 AEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--GNLVASFPVEDADQIML 854

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           V+DKG LIR PV  IRIA R+T+GV++F TA+DE VVSVE I E     EAES
Sbjct: 855 VTDKGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE-----EAES 902


>gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4]
 gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4]
 gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4]
 gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 911

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/886 (62%), Positives = 676/886 (76%), Gaps = 10/886 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILF   + G    ++YVK A
Sbjct: 19  IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILFAAHESGHLPERRYVKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDGDP AA RYTE RL
Sbjct: 79  RIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPAAAMRYTESRL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 139 AKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D C+A+ID+P + ++AL EI+ GPDFPTG +ILGR G + AYATGRGSI++R  SH
Sbjct: 199 GELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLILGRAGTRQAYATGRGSIIMRAKSH 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   +RE ++ TEIPYQVNKA ++EKIAELV+EKR+  I+DLRDESDR G R+V+E+K
Sbjct: 259 IEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRDGMRIVVEIK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+LNQLYRYT LQS F  NMVALNG +PE   L  +L AF  FREEVV RRTK+
Sbjct: 319 RDAMAEVVLNQLYRYTPLQSSFGCNMVALNGGRPELMNLKDLLLAFNDFREEVVSRRTKF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR  LM R W A DI  LI L+D
Sbjct: 379 LLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLIALVD 438

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  Y +  DGT  LSE+Q RAIL+LRL RLT LGRD++ +EL  L  EI + LDIL SR 
Sbjct: 439 DPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDELKKLADEIADYLDILRSRV 498

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I+K EL  V+    TPR+T I++    +EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 499 RIQAIVKTELAEVRALFATPRKTEIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLST 558

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFVT LF+ STHT VLFFS  G  YKEKVWRLP+ +P ARG
Sbjct: 559 YRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQAYKEKVWRLPMAAPNARG 618

Query: 616 KALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KAL+NIL L N+GERI+TIMP PEDE+SW+ L V+FAT  GNVRRNKLSDF  +NR+GKI
Sbjct: 619 KALVNILHLQNEGERISTIMPLPEDETSWDTLDVMFATASGNVRRNKLSDFTTVNRNGKI 678

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  D I+ VE C  E ++LLTT LGQC+RFP+  +RVF GR+S GVRGI+LA+ D+
Sbjct: 679 AMKLDPGDHIVHVEICRPEQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGINLAQDDK 738

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT---EEITSLKNDSSVEGNISEERCQ 791
           VISMAI+   DA  +ER  Y+K     RR + GD    E   +   ++S    IS ER  
Sbjct: 739 VISMAILNAFDASPEERAGYLK----MRRAVIGDAGEAEAEPAEAEEASEASAISLERYN 794

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQF+LT+S++GFGKR+SSY++R S R GKGI A  V+  N  G LVA FPV  +D
Sbjct: 795 EMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARN--GNLVASFPVEASD 852

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           QI+LV++ G LIRVPV++IRI  RA++GV +F+T K ERVVSVE I
Sbjct: 853 QIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 898


>gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 910

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/884 (62%), Positives = 679/884 (76%), Gaps = 8/884 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+   + G    +KYVK A
Sbjct: 16  IRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+G YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 76  RIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TVDF PNYD S +EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 136 AKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D CVA+ID+P + ++ L EI+ GPDFPTG +ILGR G + AYATGRGS+++R  SH
Sbjct: 196 GELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMILGRAGTRQAYATGRGSVIMRAKSH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   +RE ++ TEIPYQVNKA ++EKIAELV+EKR+  I+DLRDESDR G R+V+E+K
Sbjct: 256 VEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRSGMRIVVEIK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYR+T LQS F  NMVALNG +PE   L  +L+AFV FREEVV RRTK+
Sbjct: 316 RDAMADVVLNQLYRFTPLQSSFGCNMVALNGGRPELMNLKDLLQAFVDFREEVVSRRTKF 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P  AR  LM R W A DI  LI L+D
Sbjct: 376 LLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGRDWPAHDIAPLIALVD 435

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LSE Q RAIL+LRL RLT LGRD++ +EL +L  EI + LDIL SR+
Sbjct: 436 DPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTLADEIADYLDILRSRA 495

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+ GI+K EL  V+++  TPR+T IV+    +EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 496 RIQGIVKGELAEVREQFATPRKTEIVDFDGSVEDEDLIAREDMVVTVSHAGYVKRVPLST 555

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YKEKVWRLP+ +P ARG
Sbjct: 556 YRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPMAAPNARG 615

Query: 616 KALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KAL+NIL L +  ERITTIMP PEDE+SW  L V+FAT  GNVRRNKLSDF  +NR+GKI
Sbjct: 616 KALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRRNKLSDFTTVNRNGKI 675

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  D I+ VE C  + ++LLTT LGQC+RFP+  +RVF GR+S GVRGI L K D+
Sbjct: 676 AMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGILLGKDDK 735

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDSSVEGNISEERCQEL 793
           VISM I+   DA  +ER  Y+K     RR ++G++EE   +   D +    IS +R  E+
Sbjct: 736 VISMTILNAFDATAEERAGYLK----MRRAVTGESEENGDAEAEDGAEAAAISLDRYNEM 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQ++LT+SE+GFGKR+SS+++R S R GKGI A  V+  N  G+LVA FPV  +DQI
Sbjct: 792 GAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARN--GSLVASFPVEASDQI 849

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +LV+D G LIRVPV++IRI  RA++GV +F+TAKDE+VVSVE I
Sbjct: 850 MLVTDGGQLIRVPVDDIRIVGRASQGVTVFNTAKDEKVVSVEHI 893


>gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
 gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
          Length = 908

 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/885 (62%), Positives = 678/885 (76%), Gaps = 9/885 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+   + G    +KYVK A
Sbjct: 19  IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+G+YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 79  RIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESRL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TVDF+ NYD S +EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 139 ARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VD CVA+ID+P + ++AL EI+ GPDFPTG +ILGR G + AY TGRGSI++R  SH
Sbjct: 199 GELVDACVALIDDPALTIEALNEIVPGPDFPTGGMILGRAGTRQAYTTGRGSIIMRARSH 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   +RE ++ TEIPYQVNKA ++EKIAELV++KRI  I+DLRDESDR G R+V+E+K
Sbjct: 259 VEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDESDRDGMRIVVEIK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +L AF  FREEVV RRTK+
Sbjct: 319 RDAMADVVLNQLYRYTPLQTSFGANMVALNGGRPELMNLKDLLLAFNDFREEVVSRRTKF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR  LM R W A DI  LI L+D
Sbjct: 379 LLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLIALVD 438

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL  L  EI + LDIL SR+
Sbjct: 439 DPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLADEIADYLDILRSRA 498

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I+K EL  V++   TPR+T I++    +EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 499 RIQAIVKHELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLST 558

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKGRSG+  RDEDFVT LF+ +THT VLFFS  G  YKEKVWRLP+ +P ARG
Sbjct: 559 YRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEKVWRLPVAAPNARG 618

Query: 616 KALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KAL+NIL L N+GERITTIMP PEDE+SW  L V+FAT  GNVRRNKLSDF+Q+NR+GKI
Sbjct: 619 KALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFVQVNRNGKI 678

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKLD  D I+ VE C  + ++LLTT LGQC+RFP+  +RVF GR+S GVRGI+L K D+
Sbjct: 679 AMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGINLGKDDK 738

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLKNDSSVEGNISEERCQE 792
           VISMAI+   DA  +ER  Y+K     RR + GD+  E   + + + +    IS ER  +
Sbjct: 739 VISMAILNAFDASPEERAGYLK----MRRAVIGDSGEEGTENGEAEEASAAAISPERYTQ 794

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQF+LT+SE+GFGKR+SSY++R S R GKGI A  V+  N  G LVA FPV  +DQ
Sbjct: 795 MGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARN--GNLVASFPVEASDQ 852

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           I+LV++ G LIRVPV++IRI  RA++GV +F+T K ERVVSVE I
Sbjct: 853 IMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 897


>gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
 gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
          Length = 925

 Score = 1113 bits (2880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/919 (61%), Positives = 697/919 (75%), Gaps = 30/919 (3%)

Query: 8   SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+++EK         I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFG
Sbjct: 2   SDKDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFG 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL K A  LLDDL KDTVD++ NYDGSF EP VL A++PN+LVNG 
Sbjct: 122 VDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L  II GPDFPTG +ILGR GI+ 
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIILGRAGIRL 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IA+LVREK+I  I+DL
Sbjct: 242 AYHTGRGSIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L 
Sbjct: 302 RDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE+VV RRTKYLLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 362 LFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+  I+K EL++VK E  TPR+T I+E   ++EDED I REDMV
Sbjct: 482 LALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTVIIEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPI  P  RGKALINIL L QGERITTIMP PEDE SW  L V+FAT  GNVRR
Sbjct: 602 KEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------- 711
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLTT  GQC+RFP+S        
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKEF 721

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +RVF GR+S+GVRGI+LA  D+VIS++I+ H DA  +ER  Y++  +A RR   G  EE
Sbjct: 722 GVRVFQGRSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANAVRR---GGVEE 778

Query: 772 ITSLKNDSS-VEG--------NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
             +++++++ VEG         + E+R  E+   EQF+LT+SE G+GKRTSS+++R +NR
Sbjct: 779 RAAVEDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNR 838

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            GKGI A  V+  N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++
Sbjct: 839 GGKGIVAMSVNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIV 896

Query: 883 FSTAKDERVVSVERIRESE 901
           F TA DE+VVSVE I E+E
Sbjct: 897 FDTADDEKVVSVEHIPEAE 915


>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
 gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
          Length = 930

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/886 (62%), Positives = 685/886 (77%), Gaps = 10/886 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A
Sbjct: 17  IRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYDAL RMAQD+S+RL LI GQGNFGS+DGD  AA RYTECRL
Sbjct: 77  RVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGSIDGDRAAAMRYTECRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH  L D+ KDTV+F  NYDGS QEP VL ARYPN+LVNG GGIAVGMATNIP HN+
Sbjct: 137 EKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGAGGIAVGMATNIPPHNM 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +A+I+ P+I L  LMEII GPDFPTG +ILGR GIK AY  GRGS+++R    
Sbjct: 197 GEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKAAYENGRGSVIMRSKVD 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R  I+V+EIPYQVNK+AM+EKIAELVREKRI  I+D+RDESDRQG RVVIELK
Sbjct: 257 TEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDIRDESDRQGMRVVIELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A  DVI+NQLYRY+ LQ  F  NMVALNG +PE+  L  +LKAF+AFREEVV RRT++
Sbjct: 317 KDAVPDVIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLKAFIAFREEVVGRRTRF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLA+A AN+D+V+ +IR +P+P TARR+LM+R+W A DI+ LI LID
Sbjct: 377 LLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLMERNWPAKDIEPLIQLID 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  Y I  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL+ L  EIK+ LDIL SR 
Sbjct: 437 DPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDKLAAEIKDYLDILKSRE 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L I++ EL  V+DE  TPRRT I +G  D++DED I REDMVVTVSH GY+KRVPL  
Sbjct: 497 RILEIVRTELEEVRDEFATPRRTEITDGGGDLDDEDLIQREDMVVTVSHSGYIKRVPLDT 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KVWRLP+  PQARG
Sbjct: 557 YRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAYKMKVWRLPLAGPQARG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            AL+N+L L QGERIT+I+P PE+E +W  L V+FATK G +RRNKLSDF QIN++GKIA
Sbjct: 617 NALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRRNKLSDFAQINKNGKIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D I++V T T+++D+LLTT  G C+RFP + +RVF+GRNSVGVRGI+LA+GD V
Sbjct: 677 MKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGRNSVGVRGINLAEGDHV 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM I+ H D D DER  Y+K      R +SG+       ++ S  +  +++ER + +  
Sbjct: 737 ISMTILRHFDCDSDERTAYLK----LSRAMSGE----EGAESVSFEDAGMTKERFEAMDE 788

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             + ILTVSE G+GKRTSSY++R + R GKGI A  V+  N  G LVA F   ++D+I+L
Sbjct: 789 NAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRN--GRLVASFRSEESDEIML 846

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V++ G LIR PV+ IR+A R+T+GV++F+T+ DE+VV+VERI E++
Sbjct: 847 VTNGGQLIRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERISEAD 892


>gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506]
 gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506]
          Length = 918

 Score = 1110 bits (2870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/890 (61%), Positives = 678/890 (76%), Gaps = 11/890 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDE+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +      + Y K A
Sbjct: 17  IRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMRENNYVPERPYNKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++G+ MGKYHPHGN AIYDAL R+AQD+S+RL LI+GQGNFGS+DGDPPAAERYTE RL
Sbjct: 77  RVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGSIDGDPPAAERYTEVRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LLDDL KDTVDF+ NYDG  QEP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 AKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD CVA+ID PD+D++ L++ I GPDFPTGA+ILGR+GI+ AY TGRGSIV+R  + 
Sbjct: 197 GEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALILGRSGIRQAYLTGRGSIVMRSRAT 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DR+ I+VTEIPYQVNKA M+E+IAELVR+KR+  IA++RDES R+G RVV E+K
Sbjct: 257 IEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAEIRDESSREGLRVVFEIK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LN LYR ++LQ+ F  NMVALNG KP   TL  +L AFVAFREEVV RRTK+
Sbjct: 317 RDAQADVVLNNLYRMSALQTSFGANMVALNGGKPALMTLHDLLTAFVAFREEVVSRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLAIAVAN+DEV+  IR SP+P TAR  LM R W A D+  LI LID
Sbjct: 377 LLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREALMTRDWPAMDVAPLIALID 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LS  Q RAIL+LRL RLT LGRD++ +EL+ + +EI++ LDIL+SR 
Sbjct: 437 DPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADELDKIAVEIRDYLDILASRE 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I+K ELL+VK E  TPR+T I +   D EDED I REDMVVTVSH GY+KRVPLS 
Sbjct: 497 RIRTIVKDELLAVKAEFGTPRKTEITDAEGDFEDEDLIAREDMVVTVSHAGYIKRVPLST 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKGRS +  RDEDFVT +F+ STH  VLFFSS G VYK KVWRLP+ +PQARG
Sbjct: 557 YRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVYKLKVWRLPLSAPQARG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+NIL L +GERIT+IM  P DE +W+ L ++F+T  G VRRN+LSDF  +NR+GKIA
Sbjct: 617 KALVNILPLTEGERITSIMALP-DEETWSRLQIMFSTTGGTVRRNELSDFTNVNRNGKIA 675

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  + I  V+ CT+++D+LLT+  GQC+RFP+  +RVF GR+S+GVRGI L +GD++
Sbjct: 676 MKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRL 735

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISG--------DTEEITSLKNDSSVEGNISE 787
           ISMAI+ H DA  +ER  Y+K  +A RR  +G        +T      +   +   +I +
Sbjct: 736 ISMAIIRHVDATAEERAAYIKLANAVRRSQAGLENGAEEPETVADADAEEAVAAPADIDQ 795

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            R  E+   EQFILT+SE GFGKRTSS+++R + R GKGI A  V++ N  G L+A FPV
Sbjct: 796 ARYVEMSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMAVNERN--GPLIASFPV 853

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + DQI+LV+D G LIR PVN IRI  R ++GV++F+TA+DE+VVSVER+
Sbjct: 854 EEADQIMLVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAEDEKVVSVERV 903


>gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
          Length = 917

 Score = 1109 bits (2869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/917 (61%), Positives = 692/917 (75%), Gaps = 21/917 (2%)

Query: 8   SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           SD+++EK         I  +SI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFG
Sbjct: 2   SDKDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFG 61

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGS
Sbjct: 62  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGS 121

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG 
Sbjct: 122 VDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+I++P + +D L+ II GPDFPTG +ILGR GI+ 
Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIILGRAGIRL 241

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+DL
Sbjct: 242 AYHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDL 301

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P    L  +L 
Sbjct: 302 RDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPHLMNLRDLLT 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE+VV RRTKYLL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 362 LFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMS 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ 
Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+  I+K EL++VK E  TPR+T I+E   ++EDED I REDMV
Sbjct: 482 LALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTMIIEQEGEVEDEDLIQREDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VY
Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPI  P  RGKALINIL L QGERITTIMP PEDE SW  L V+FAT  GNVRR
Sbjct: 602 KEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRR 661

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF GR
Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFTGR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-DTE-----EIT 773
            S+GVRGI+LA GD+VIS+ I+ H +A   ER  Y+K   A RR   G DT+     E+T
Sbjct: 722 TSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTDVSEVSEVT 781

Query: 774 SLKNDSSVEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +       EG   +S +R  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  
Sbjct: 782 AEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMS 841

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V+  N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F TA DE+V
Sbjct: 842 VNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKV 899

Query: 892 VSVERIRESEIVDEAES 908
           VSVE I E+E   EAE+
Sbjct: 900 VSVEHIPEAE---EAEN 913


>gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
          Length = 917

 Score = 1108 bits (2867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/884 (61%), Positives = 676/884 (76%), Gaps = 6/884 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSITDE+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G EWNK+Y K A
Sbjct: 17  IRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKQYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHGN ++YDAL RM Q +S+R+ LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 77  RVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LLD+LG+DTVDF+ NYD S  EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 EKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG VA++D+P +D + L++ I GPDFPTGA+I+GR+GI+ AY TGRGSI++R  + 
Sbjct: 197 GEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIMGRSGIRQAYMTGRGSIMMRARAT 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    +RE I++TEIPYQVNKA M+EKIAELVR+KR+  IA++RDESDR+G RVVIE+K
Sbjct: 257 IETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEIRDESDREGMRVVIEVK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LN LYR T LQ+ F VNMVAL+G +P   TL   L AF+AFREEVV RRTK+
Sbjct: 317 RDAQADVVLNNLYRMTPLQTSFGVNMVALSGGRPAVMTLHDTLTAFIAFREEVVSRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLAIAVAN+DE++++IR +P+P TAR  LM+R W A D+  L+ LI 
Sbjct: 377 LLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLMERHWPAKDVASLVALIA 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + + SDGT  LS  Q RAIL+LRL RLT LGRD+I +EL+ L +EI E L+IL+SR 
Sbjct: 437 DPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDKLALEIAEYLEILASRP 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  II++ELL+++ E +TPRRT I EG  D++DED I REDMVVTVSH GYVKRVPLS 
Sbjct: 497 RMRAIIREELLALRAEFNTPRRTEITEGFGDLDDEDLIAREDMVVTVSHAGYVKRVPLST 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRS +  RDEDFVT LF+ STH  VLFFSS G VYK KVWRLP  +PQARG
Sbjct: 557 YRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKVWRLPAAAPQARG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALINIL L   ERIT+I+P PE+    +   ++FAT  G VRRN L+DF Q+NR+GKIA
Sbjct: 617 KALINILPLQPDERITSIVPLPENLEEHSLWQIMFATTGGTVRRNALADFSQVNRNGKIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  ++I SV+ C +  D+LLTT  G C+RFP+  +R+F GR+SVGVRGI L +GD++
Sbjct: 677 MKLEEGEQIASVQLCNEHQDVLLTTANGACIRFPVPEVRLFKGRDSVGVRGIRLEEGDRL 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISMAI+ H DA  +ER+ Y++   AQ    + +   I       + EG +   +  E++ 
Sbjct: 737 ISMAIINHTDAAAEERVQYLRQSRAQ----AAEDAPIELEGEAPAAEGKLDPVKFLEMET 792

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQFILT+SE G+GKRTSSY++R++ R GKGI A  V++ N  G LVA FPV D DQI+L
Sbjct: 793 NEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--GKLVASFPVRDADQIML 850

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V+D G LIR PVN IRI  R+++GV++F TA DERVVSVE I E
Sbjct: 851 VTDGGQLIRCPVNGIRIVGRSSQGVIVFDTAADERVVSVEHISE 894


>gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 884

 Score = 1107 bits (2864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/884 (63%), Positives = 675/884 (76%), Gaps = 7/884 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   +KKYVK AR+ G+V+GK
Sbjct: 1   MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL KAA  LL 
Sbjct: 61  YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD +  EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D CVA
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY  GRGSIV+RG   IE    +RE
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETIRKERE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +++TEIPYQVNKA M+E+IAELV+EK+I  I DLRDESDR GYRVVIELKR A ADV+L
Sbjct: 241 ALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F VNMVAL+  +P    L  +L  FV FRE VV RRTK+LL KARDRA
Sbjct: 301 NQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D++D++ LIDD  + I  D
Sbjct: 361 HILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRISPD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT+ LS  Q RAIL+LRL RLT LGRD+IR+EL+ L  EI + LDIL SR R+LGIIK E
Sbjct: 421 GTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIKTE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  VK E  TPRRT I+E   ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK
Sbjct: 481 LAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GR+G+  RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARGKALINIL L
Sbjct: 541 GRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QGERITTIMP PEDES+W NL V+FAT  GNVRRNKLSDF+ + RSG IAMKLD  + I
Sbjct: 601 EQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAI 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + V+ CT+ +D+LLT   GQC+RFP++ +RVF GR S+GVRGI+L +GD+VIS+AI+ H 
Sbjct: 661 VDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHV 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           +   DER  Y+K   A     + +     +   ++S    +++ER  E+   EQ +LTVS
Sbjct: 721 ETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVS 780

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+GKRTSSY++R + R GKGI A  V+  N  G LVA FPV D DQI+LV+DKG LIR
Sbjct: 781 VNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--GNLVASFPVEDADQIMLVTDKGQLIR 838

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            PV  IRIA R+T+GV++F TA+DE VVSVE I E     EAES
Sbjct: 839 CPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE-----EAES 877


>gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
 gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
          Length = 914

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/902 (60%), Positives = 684/902 (75%), Gaps = 8/902 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  VSIT+E+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G EWNK 
Sbjct: 12  EPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKS 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ ++YDAL RMAQ +++RL L++GQGNFGSVDGD PAA RY
Sbjct: 72  YRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGSVDGDAPAAMRY 131

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K  + LLDDL KDTVDF+ NYD S  EP VL A++PN+LVNG GGIAVGMATNI
Sbjct: 132 TEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGAGGIAVGMATNI 191

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD  VA++D+P ++ +AL++++ GPDFPTGA+ILGRTGI+ AY TGRGSI++
Sbjct: 192 PPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALILGRTGIRQAYLTGRGSILM 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE    +RE ++VTEIPYQVNKA M+EK+AELVR+KRI  IA++RDESDR G RV
Sbjct: 252 RAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEIRDESDRDGMRV 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G KP   TL  +L AF+AFREEV+ 
Sbjct: 312 VIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGKPGVLTLHDVLTAFIAFREEVIS 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P +AR  LM R W A D+  L
Sbjct: 372 RRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMARDWPAKDMAPL 431

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I LI D  + +G D T  LS  Q RAIL+LRL RLT LGRD+I  EL+ L +EI + LDI
Sbjct: 432 IALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDKLAVEIADYLDI 491

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+SR R+  I++ EL+++K+E  TPRRT IVEG  D+EDED I RE+MVVTVSH GY+KR
Sbjct: 492 LASRPRMRAIVRAELIAIKEEFGTPRRTEIVEGFGDLEDEDLIQREEMVVTVSHAGYIKR 551

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPLS YRAQRRGGKGRS +  RDEDFVT LF+ STH  VLFFSS G VYK KVWRLP+ +
Sbjct: 552 VPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKVWRLPLAA 611

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           PQARGKALINIL L Q ERIT+++  PED      L ++FAT  G VRRN L+DF Q+NR
Sbjct: 612 PQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRRNALTDFQQVNR 671

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIAMKL+  + I  V  CT+++D+LLTT  G C+RFP++ +RVF GR+SVGVRGI L 
Sbjct: 672 NGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFPVTDVRVFKGRDSVGVRGIRLE 731

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN--ISEE 788
            GD +ISMAI+ H DA  +ER+ Y+K    +RR ++G+  E   ++ +    GN  + ++
Sbjct: 732 DGDTIISMAIIGHVDASAEERLAYIK----RRRALAGEATEAGDVEAEEGASGNGHLGQD 787

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  E+  KEQFILTVSE G+GKRTSSY++R++ R GKGI A  V++ N  G LVA FPV 
Sbjct: 788 RYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--GRLVASFPVE 845

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D DQI+LV+D G LIR PV+ IRI  RA++GV++F TA+ ERVVSVE I +    + ++ 
Sbjct: 846 DQDQIMLVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHISDDAGAENSDG 905

Query: 909 TE 910
            E
Sbjct: 906 EE 907


>gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
          Length = 927

 Score = 1107 bits (2862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/895 (62%), Positives = 681/895 (76%), Gaps = 13/895 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G EWNK Y K A
Sbjct: 18  IRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVDGD  AA RYTE RL
Sbjct: 78  RTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDSAAAMRYTESRL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 138 TKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG   
Sbjct: 198 GEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIILGRAGIRLAYHTGRGSIVMRGKVA 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE T  DRE I+++EIPYQVNKA M+E+IAELVREK+I  I+DLRDESDR G+RVVIEL+
Sbjct: 258 IEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIELR 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L+ FVAFRE+VV RRTK+
Sbjct: 318 RDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLRLFVAFREQVVTRRTKF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D+  +I LID
Sbjct: 378 LLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARDWEAKDVAAMITLID 437

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + + +DGT  LS  Q +AIL+LRLARLT LGR++I  EL+ L IEI + L+IL SR+
Sbjct: 438 DPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLAIEIADYLEILRSRA 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  IIK+EL +VK E  TPR+T I+E   ++EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 498 RVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLST 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLPI  P  RG
Sbjct: 558 YRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAPPNGRG 617

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALINIL L QGERITTIMP PEDESSW  L V+FAT  G VRRNKLSDF+ + RSG IA
Sbjct: 618 KALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNKLSDFVDVRRSGIIA 677

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  + I+ V+ CT  +D+LLT   GQC+RF ++ +RVF  R S+GVRG++LA GDQV
Sbjct: 678 MKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAVTDVRVFQSRASMGVRGMALANGDQV 737

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDT------EEITSLKNDSSVE-----GN 784
           IS+ I+ H DA+  ER  Y+K   A RR  +G+        E+ +   D+  E      +
Sbjct: 738 ISLTILRHFDANPAERSTYLKQSGAIRRAATGEEAEAVEGSELAAEVADAEPEEVDAIAS 797

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +S +R  E+   EQF+LT+SE GFGKRTSS+++R + R GKGI A  V+  N  G LVA 
Sbjct: 798 LSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAMAVNARN--GKLVAS 855

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           FPV + DQI+LV+DKG LIR PV  IRI  R+T+GV +F+TA+DE VVSVERI E
Sbjct: 856 FPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSVERIGE 910


>gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
 gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
          Length = 912

 Score = 1103 bits (2854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/901 (61%), Positives = 684/901 (75%), Gaps = 6/901 (0%)

Query: 1   MTEHIISSDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E     D+ E+ G  I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF
Sbjct: 1   MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL+L++GQGNFG
Sbjct: 61  SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVD DPPAA RYTE RL K A  LL+D+ + TVDF+PNYDG   EP VL AR+PN+LVNG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D  +A+ID PD+ +  LMEI+ GPDFPT A ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATILGRGGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           NAYATGRGSI++R  + IE    +RE I+ TEIPYQVNKAA++E+IAELV+EKR+  IAD
Sbjct: 241 NAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F+VNM+ALNG +PE  TL  +L
Sbjct: 301 LRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALNGGRPELMTLHDVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV FRE VV RRTK+ L KARD AH+ VGLAIAVAN+DEV+R+IR SP+   AR  LM
Sbjct: 361 RAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D+  L++LI D  + +  DGT+ LSE Q RAIL+LRL RLT LGR++I   LN
Sbjct: 421 ARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  EI E L+IL SR +L GIIK E+L+VK+   TPRRT+I +   D+EDED I REDM
Sbjct: 481 KLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATPRRTQITDAEGDVEDEDLIAREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ M++EDFV  LF+ +THT VLFFSS G  
Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKA 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+ +PQARGKAL+N+L L  GERITTIMP PEDESSW  L V+FAT  G VR
Sbjct: 601 YKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + R+G IAMKLD  + I+ V T T+ +DILLTT  GQC+RF +  +RVF G
Sbjct: 661 RNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEVRVFQG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLK 776
           R S+GVRG+SL +GD+VIS++I+ H +A  +ER  Y+K  +A RR +  D   +     +
Sbjct: 721 RTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGEDVSPDAGAEAE 780

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             ++    +++ER   +++ EQ ILTVSE G+GKRTSSY++R + R GKGI A  V+  N
Sbjct: 781 EAATGAVELTDERFAAMQVAEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARN 840

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV   D+I+LV++ G LIR PV+ IRIA R+T+GV++F+TA+DERVVSVE 
Sbjct: 841 --GKLVASFPVGQGDEIMLVTNGGQLIRCPVDGIRIAGRSTQGVIVFNTAEDERVVSVEH 898

Query: 897 I 897
           I
Sbjct: 899 I 899


>gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 915

 Score = 1100 bits (2846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/912 (60%), Positives = 691/912 (75%), Gaps = 15/912 (1%)

Query: 7   SSDEEEEKG-----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +SD+E   G     I  VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M 
Sbjct: 4   NSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILFAMN 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G++WNKKYVK ARI GEVMGKYHPHGN AIYDAL R+AQD+S+R+ L++GQGNFGS+D
Sbjct: 64  ELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFGSID 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPAAERYTE RL K A FLLDDL  DTVD+R NYDG+ QEP VL A++PN+LVNG GG
Sbjct: 124 GDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D C+A +DNP+I +D L +II+GPDFPT  +ILGR GI +AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLILGRGGILSAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRGSI++R    +E    DRE +VV+EIPYQVNK  ++EKIA+LVR+K+I  I+DL D
Sbjct: 244 HKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISDLWD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES+R+G R+VIELKR A ADV+LN LY+Y+ LQ+ F  NM+A+NG +PE  TL   + AF
Sbjct: 304 ESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAINGGRPESLTLKDFISAF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
            +FR++VV RR K+LLNKARDRAHVLVGLAIAVAN+DEV+++IRFS +P  A+ +LM R 
Sbjct: 364 TSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLMARD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  LI+LI D  + + + GT  LSE Q +AILELRLARLT LGRD+I +ELN + 
Sbjct: 424 WPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELNKIA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI+E L IL+SR+R++ I+K EL ++KDE  TPR+T IV+   ++EDED I RED VVT
Sbjct: 484 NEIREYLAILASRARVVDIVKGELQTIKDEFATPRKTEIVDIEGEVEDEDLIQREDCVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ STHT VLFFSS G  Y+ 
Sbjct: 544 VSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMCYRM 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP  SPQ+ GKAL+N+L L Q E IT+I+P PED S+W+ L ++FAT+ GNVRRN 
Sbjct: 604 KVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVRRNA 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRN 720
           L+DF  INR+GKIAMKLD  D I+ V     + D+LLT+  GQCVRF IS  IR+F GR+
Sbjct: 664 LADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFKGRD 723

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI L  GD+VISMAI+ H +A  +ER  Y+K  SA RR  S +TE+   +    +
Sbjct: 724 STGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRR--SEETEDAEPVAEADA 781

Query: 781 VEGN-----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            E +     +S ER   ++  EQF+LTVS KGFGKR+SS++FR S R GKGI A  V+  
Sbjct: 782 EEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVNDR 841

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G L+A FP+++ DQI+LV+D G LIR PV+ +RIA R T+GV IF T  +E+VVSVE
Sbjct: 842 N--GRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVVSVE 899

Query: 896 RIRESEIVDEAE 907
           RI E E  + +E
Sbjct: 900 RITEDETDEGSE 911


>gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
          Length = 918

 Score = 1095 bits (2832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/891 (61%), Positives = 671/891 (75%), Gaps = 9/891 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM + G EWNK Y K A
Sbjct: 20  IRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL
Sbjct: 80  RTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESRL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GGIAVGMATNIP HNL
Sbjct: 140 TKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D CVA+I++P + +D L +II GPDFPTG +ILGR GI+ AY TGRGSIV+RG   
Sbjct: 200 GEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIILGRAGIRLAYHTGRGSIVMRGKVS 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    DRE I+++EIPYQVNKA M+E+IAELVREK+I  I+DLRDESDR G+RVVIEL+
Sbjct: 260 IEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIELR 319

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYR+T LQ+ F  NMVAL+  +P    L  +L  FVAFRE+VV RRTK+
Sbjct: 320 RDAVADVVLNQLYRFTPLQTNFGANMVALDAGRPLLMNLKDLLTLFVAFREQVVTRRTKF 379

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D+  +I LID
Sbjct: 380 LLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRDWPAQDVAAMITLID 439

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L +EI + L+IL SR+
Sbjct: 440 DPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRA 499

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  IIK EL +VK E  TPRRT I+E   ++EDED I REDMVVTVSH GYVKRVPLS 
Sbjct: 500 RVQTIIKDELAAVKAEFATPRRTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLST 559

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGR+G+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+  P  RG
Sbjct: 560 YRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRG 619

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALINIL L QGERI TIMP PEDESSW    V+FAT  G VRRNKLSDF+ + RSG IA
Sbjct: 620 KALINILPLEQGERINTIMPLPEDESSWAEFDVMFATTRGTVRRNKLSDFVDVRRSGIIA 679

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  + I+ V+ CT  +D+LLT   GQC+RF ++ +RVF  R S+GVRG++LA GDQV
Sbjct: 680 MKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTDVRVFQSRASMGVRGMALANGDQV 739

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-------GNISEE 788
           IS+ I+ H DA   ER  Y+K   A RR  +G+  E + +   +            +S E
Sbjct: 740 ISLTILRHFDATPAERTTYLKQSGAIRRAATGEEVEPSEVVEAAVEPEEETDGLAALSPE 799

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  E+   EQF+LT+SE GFGKRTSS+++R + R GKGI A  V+  N  G LVA FPV 
Sbjct: 800 RYAEMSANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNARN--GKLVASFPVE 857

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + DQI+LV+DKG LIR PV  IRI  R+T+GV +F+TA+DE VVSVE I E
Sbjct: 858 EEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSVEHIGE 908


>gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
 gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
          Length = 927

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/896 (60%), Positives = 677/896 (75%), Gaps = 16/896 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +     ++ YVKCA
Sbjct: 16  IRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMHEQNHTPDRPYVKCA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDAL RMAQ +S+RL LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 76  RIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSVDGDPPAAMRYTESRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+D+  DTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 136 ARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +A+IDNP++ ++ LM  + GPDFPTG  ILGRTGI++AY TGRGS++ R    
Sbjct: 196 GEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAILGRTGIQSAYLTGRGSVLTRAKVE 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E    +RE ++VTEIPYQ+NK++++EKIA+LVREKR+  I+DLRDESDR G R+VIELK
Sbjct: 256 VETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLRDESDRDGMRIVIELK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+LNQL+RYT+LQS F+ NM+ALNG +PE  TL   L AFV FREEVV RRTKY
Sbjct: 316 RDAVAEVVLNQLWRYTALQSSFACNMIALNGGRPEMLTLKDFLTAFVDFREEVVTRRTKY 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  LM RSW A D+  L+ LI 
Sbjct: 376 LLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMARSWPAHDMAPLVLLIA 435

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  +G   LSE Q RAILELRL RLT LGR++I   LN L +EI + L+IL SR 
Sbjct: 436 DPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKLAVEIADYLEILHSRE 495

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  I+K+E+L+VK    TPRRT I++    ++DED I REDMVVTVSH GYVKRVPL+ 
Sbjct: 496 RLFSIVKEEMLAVKAAHATPRRTIILDSATGVDDEDLIQREDMVVTVSHHGYVKRVPLAT 555

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRS +  RDEDFV  LF+ STH  VLFFSS G VYKEKVWRLP+ +PQARG
Sbjct: 556 YRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYKEKVWRLPLAAPQARG 615

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+N+L L QGERITTIMP PE+E +W  L V+FAT  G VRRNKLSDF Q+NR+GKIA
Sbjct: 616 KALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRNKLSDFAQVNRAGKIA 675

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           M++D  +EI+ V+ C ++ D+LLTT  GQC+RFP++ +RVF GR+S+GVRGISL++GD+V
Sbjct: 676 MRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFPVTDVRVFKGRDSMGVRGISLSEGDRV 735

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG----------NI 785
           IS+AI+ H +AD  ERI Y+K     RR ++G+       ++ +  +G          ++
Sbjct: 736 ISLAILRHTEADSGERIAYLK----MRRAVAGEASAEAGAESPADAQGEDGAEDAGPQSL 791

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S +R   +   EQ ILT+S  G+GKRTSSY++RI+ R GKGI A  V+  N  G LVA  
Sbjct: 792 SPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRN--GLLVASM 849

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           PV D D+I+LV++ G LIR PV  IR+A R T+GV++F+T  DE+VVSVERI E +
Sbjct: 850 PVEDGDEIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTGADEQVVSVERITEED 905



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEND-ILL 698
           S +   ++  + +G  +R    ++    R GK  +AM ++ R+ +L      ++ D I+L
Sbjct: 800 SADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVEDGDEIML 859

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            T  GQ +R P+  IRV AGR + GV   +    +QV+S+  +   DA
Sbjct: 860 VTNGGQLIRCPVEGIRV-AGRGTQGVIVFNTGADEQVVSVERITEEDA 906


>gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
 gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
          Length = 911

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/914 (60%), Positives = 680/914 (74%), Gaps = 13/914 (1%)

Query: 6   ISSDEEEEKG-------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           ++ D+ E+ G       I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI+F
Sbjct: 1   MADDDTEKTGAAAPGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL LI+GQGNFG
Sbjct: 61  SMHENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVD DPPAA RYTE RL K A  LL+DL + TVDF+PNYD    EP VL AR+PN+LVNG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D  +A+ID PD+ +  LMEI+ GPDFPT A ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATILGRGGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           NAY+TGRGSI++R  + IE    +RE I+ TEIPYQVNKAA++E+IAELVREK+I  +AD
Sbjct: 241 NAYSTGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F VNM+ALNG +PE  TL  +L
Sbjct: 301 LRDESDRDGMRIVVELKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGRPELLTLKDVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AFV FRE VV RRTK+ LNKARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  LM
Sbjct: 361 VAFVDFRESVVTRRTKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R W A D+  L+ LI D  + +  DGT+ LSE Q RAIL+LRL RLT LGR++I   LN
Sbjct: 421 ERLWPAKDMAPLVALIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  EI E L+IL SR +L GI+K E+++VK    TPRRT+IV+G  D+EDED I REDM
Sbjct: 481 KLAAEIAEYLEILRSREKLFGIVKDEMIAVKTAYATPRRTQIVDGDGDVEDEDLIAREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPLS YRAQRRGGKGRSG+  ++EDFV  LF+ STHT VLFFSSLG  
Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRA 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+ +PQARGKAL+N+L L Q ERITTIMP PEDESSW  L  +FAT  G VR
Sbjct: 601 YKEKVWRLPLAAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGTVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF  + RSG IAMKLD  + I+ V T ++ +D+LLTT+ GQC+RFP++ +RVF  
Sbjct: 661 RNKLSDFSDVRRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+S+GVRG++LA  D+VIS++I+ H +A  +ER  Y+K  +AQRR  + +          
Sbjct: 721 RSSMGVRGVALAAEDRVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAAEA 780

Query: 779 SSVEGNI--SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                +I  SE R ++++  EQ ILTVSE G+GKR+SS+++RI+ R GKGI A  V+  N
Sbjct: 781 EESSASIELSEARFRDMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARN 840

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV    +I+LV+D G LIR PV  IRI  R T+GV++F TA+ ERVVSVE 
Sbjct: 841 --GKLVASFPVGSGAEIMLVTDGGQLIRCPVEGIRIVGRGTQGVIVFDTAEGERVVSVEH 898

Query: 897 IRESEIVDEAESTE 910
           I E+    EAE  E
Sbjct: 899 IGETGA--EAEVAE 910


>gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 929

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/884 (61%), Positives = 669/884 (75%), Gaps = 4/884 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VS++DEMQ+SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +     ++ YVK A
Sbjct: 16  IKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSMHENNHTPDRPYVKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ AIYDAL RMAQ +S+RL LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 76  RIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSVDGDPPAAMRYTESRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+  DTVDF+PNYDG   EPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 136 ARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAGGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +A+IDNP++ ++ L  I+ GPDFPTG  ILGR GI++AYATGRGS+++R    
Sbjct: 196 GEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSILGRAGIRSAYATGRGSVLMRAKIE 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    RE ++VTEIPYQVNKA ++EKIAELVREKRI  I+DLRDESDRQG R+VIE+K
Sbjct: 256 IEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLRDESDRQGMRIVIEIK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  D++LNQL+RYT+LQS F  NM+ALNG +PE  TL   L AF+ FREEVV RRTKY
Sbjct: 316 RDAVPDIVLNQLWRYTALQSSFPCNMIALNGGRPETLTLRDFLTAFIDFREEVVTRRTKY 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  L  R W A D+  LI LI 
Sbjct: 376 LLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCARDWPARDMAPLIALIA 435

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  +GT+ LSE Q RAILELRL RLT LGRD+I   LN L  EI + LDIL SR+
Sbjct: 436 DPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKLAAEIADYLDILGSRA 495

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL GIIK E+++VK+   TPRRT I++    ++DED I REDMVVTVSH GY+KRVPLS 
Sbjct: 496 RLFGIIKDEMIAVKEAHATPRRTIILDSDAGVDDEDLIQREDMVVTVSHAGYIKRVPLST 555

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RD+DFV  LF+ STH  VLFFSS G VYKEKVWRLP+ +PQA G
Sbjct: 556 YRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFFSSRGQVYKEKVWRLPLSAPQALG 615

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+NIL L Q ERITTIMP PEDE  W +L V+FAT  G VRRNKLSDF Q+NR+GKIA
Sbjct: 616 KALVNILPLEQDERITTIMPLPEDEKQWESLDVMFATTRGTVRRNKLSDFAQVNRAGKIA 675

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           M+LD  ++I+ V+ CT+++D+LLTT  GQC+RF ++ +RVF GR+S+GVRGI+L +GD+V
Sbjct: 676 MRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRDSMGVRGIALGEGDRV 735

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG--NISEERCQEL 793
           IS+AI+ H +AD DER  Y+K   A     + +        N     G  ++S ER  E+
Sbjct: 736 ISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEEALGSTSLSLERYAEM 795

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQ ILT+S  G+GKRTSS+++RI+ R GKGI A  V+  N  G LVA  PV + D I
Sbjct: 796 SAGEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARN--GKLVASMPVEEGDGI 853

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +LV++ G LIR PV  IR+A R T+GV++F+TA+DE+VVSVERI
Sbjct: 854 MLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTAEDEQVVSVERI 897


>gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 926

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/900 (57%), Positives = 674/900 (74%), Gaps = 10/900 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + GI  +SI  E+++SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G   +K Y 
Sbjct: 24  QDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEGGNTPDKPYS 83

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG++A+YDAL RMAQ +S+ + L++GQGNFGS+D DPPAA RYTE
Sbjct: 84  KSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVPLVDGQGNFGSIDNDPPAAMRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K    LL DL KDTVDF+ NYDG  +EPVVL A++PN+LVNGGGGIAVGMATNIP 
Sbjct: 144 SRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPAQFPNLLVNGGGGIAVGMATNIPP 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  +A+I++P I  +AL EI+ GPDFPTGA+I+G++G + A  TGRGS+++R 
Sbjct: 204 HNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGALIMGQSGSRKALMTGRGSVIMRS 263

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    RE I+V+EIPYQVNKAAM+ KIAELVREK+I  I+DLRDESDR G RVVI
Sbjct: 264 KTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVREKKIEGISDLRDESDRNGIRVVI 323

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR ASADV+LNQLYR++ LQS F+VNM+ALNG +PE   L  +L+ F+ FREEV+VRR
Sbjct: 324 ELKRDASADVVLNQLYRFSQLQSSFAVNMLALNGGRPELMNLRKVLEYFITFREEVIVRR 383

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KARDRAHVLVGLA+AVAN+DEV+R+IR SP+P TAR+ L+ ++W   D+  LID
Sbjct: 384 TKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPDPATARQRLLDKAWPQQDMGPLID 443

Query: 433 LIDDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           LI D     GS +GT+YLS+ Q R+IL L L RLTGLGRD+I NE   L  +I E L+IL
Sbjct: 444 LIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGLGRDEIGNEAKGLADKIAEYLEIL 503

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            SR R+LGIIK EL  VK++   PRR++ V+G +DMEDED I  EDMVVTV+H GYVKR 
Sbjct: 504 RSRPRILGIIKAELAEVKEKFAVPRRSQFVDGGVDMEDEDLIEVEDMVVTVTHGGYVKRT 563

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS YR Q RGGKGRSG+ M+DEDF+  +F  +THT +LFFSS G VYKEKVWRLPIG P
Sbjct: 564 PLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTEILFFSSAGMVYKEKVWRLPIGGP 623

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RGKAL+NI  L   ERI ++MP P+ E +  +L V+FAT+ GNVRRN+L+DF ++NR+
Sbjct: 624 TSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDVMFATRSGNVRRNRLADFTRVNRA 683

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAMKLD  D I+SV+ C++++D+LLTT LGQ +RF ++ +RVFAGR+S GVRGI L  
Sbjct: 684 GKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRFAVTDVRVFAGRDSTGVRGIRLGA 743

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VISM I+ H     +E   Y+KH +A RR ++G+ EEI+  +++   E  +S ER  
Sbjct: 744 EDTVISMGILRHMGVTSEEARAYLKHAAAMRRAVTGEEEEISDDEDEVVAEAALSAERIA 803

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV----SKINEIGALVAVFPV 847
           EL   E+FI TV++ G GKR+S+YD+R++ R GKG+ A ++     K   +  +   FPV
Sbjct: 804 ELGAAEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDKKGGPVKKVAQSFPV 863

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D+++LV+D G LIR PV++IRIA R+T GV +  T   ERVVS  R     +VD+ E
Sbjct: 864 GDGDEVMLVTDGGQLIRTPVDQIRIAGRSTGGVWVLRTGDGERVVSAAR-----LVDDGE 918


>gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10]
 gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10]
          Length = 946

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/891 (58%), Positives = 664/891 (74%), Gaps = 9/891 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI +++I DEM++SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G    K Y KC
Sbjct: 32  GIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTMHENGQTHEKSYRKC 91

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A   G+VMG+YHPHG+ A+YD+L R+AQDWS+R+ LI+GQGNFGSVDGDPPAA RYTE R
Sbjct: 92  ATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSVDGDPPAAYRYTEAR 151

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +QK A  LL D+ KDTV+F  NY    QEPVVL ARYPN+LVNG GGIAVGMATN+P HN
Sbjct: 152 MQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAGGIAVGMATNVPPHN 211

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG +A+++NP +    L++ I GPDFPTG +ILGRTG +NA  TGRGSIV+R  +
Sbjct: 212 LGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLILGRTGARNAVLTGRGSIVMRSRT 271

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+   DR  I+V EIPYQVNKA+M+EKIA+LVR+K+I  IADLRDESDR G RVVIEL
Sbjct: 272 SIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADLRDESDRNGMRVVIEL 331

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ADVILNQL+R++ +Q+ F  NM++L G +P+    + ILK F+ FREEVV RR K
Sbjct: 332 KRDANADVILNQLFRWSPMQTSFGANMLSLVGGRPQLLGALDILKEFLRFREEVVARRAK 391

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKARDRAHV++GLA+AVAN+DEV+ +IR +PNP TAR +LM R W A D+  L++L+
Sbjct: 392 FELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLMARDWPAMDVAPLVELV 451

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D    +  D T+ L+E Q RAILELRL RLTGLGR+++ NE  +L  +I + LD+L SR
Sbjct: 452 ADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAKTLADQIADLLDLLRSR 511

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+L II+ EL  V++   TPRR+  V+  LD EDED I R++MVVTV+H GY KR  LS
Sbjct: 512 QRVLDIIRDELTEVRENYATPRRSEFVDAELDFEDEDLIPRDEMVVTVTHGGYAKRTALS 571

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGRSG+  +DEDF+  LF+ STH  +LFFS+ G VYK K WRLP+G+P  R
Sbjct: 572 DYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLLFFSNRGMVYKTKTWRLPLGAPNTR 631

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKALIN+L L QGE IT+IM  PEDES+W ++ V+FAT  G VRRNKLSDF+Q+NR+GKI
Sbjct: 632 GKALINLLPLEQGETITSIMALPEDESTWADMNVMFATNKGTVRRNKLSDFVQVNRNGKI 691

Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   D+I++V  CT+++D+ LTT  G+ +RFP + +RVFAGRNSVGVRGI LA+GD
Sbjct: 692 AMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFAGRNSVGVRGIRLAEGD 751

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI----TSLKNDSSVEGNISEER 789
           ++ISMAI+ H D    E   YMKH +A RR + GD EEI    T    D   E  +S ER
Sbjct: 752 ELISMAILHHIDVTSPEARAYMKHATAMRRAL-GDDEEIETVNTDGDEDGDDEAALSTER 810

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             EL   E+F+LTV+  G GKR+S+YDFR+  R   G+ ATD+ +  +I  L A FPV D
Sbjct: 811 LAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIKR--DI-PLSASFPVED 867

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            DQI+ V+D G LIR PV+ +RIASR+++GV +    + E VV+V RI+++
Sbjct: 868 ADQIMAVTDGGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVVRIQDA 918


>gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814]
          Length = 981

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/911 (57%), Positives = 683/911 (74%), Gaps = 16/911 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G++ ++I+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  ++K Y 
Sbjct: 40  EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ ++YDAL RMAQ++S+ L L++GQGNFGS+DGDP AA RYTE
Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+K A+ LL D+ KDTV+F+ NYDGS +EP+VL AR+PN+LVNGGGGIAVGMATNIP 
Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +A+I++P+ID +AL+EI+ GPDFPTGA+I+GR G ++   TGRGS+++R 
Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRS 279

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S IE+    RE +V TEIPYQVNKA+M+EKIAELVR+KRI  IAD+RDESDR G RVV+
Sbjct: 280 KSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVV 339

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR AS +V+LNQL+RYT LQ+ F +NM+ALN  +PE  +L  IL+AF+ FREEVV RR
Sbjct: 340 EVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARR 399

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKAR RAH+LVGLA+AVAN+DEV++IIR SP+P TAR +LM R+W A D+  LI+
Sbjct: 400 TKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLIN 459

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI D        G + LSE Q RAIL+LRL RLTGLGRD+I +E   L   I + LDILS
Sbjct: 460 LIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDILS 519

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR R++ II +EL  V++E   PRR++ +E  LDM+DE  I +EDMVV  +H GY KR  
Sbjct: 520 SRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGGYAKRTA 579

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS+YR Q RGG+GRSG+  ++ED VT  F+ +THT VLFFSS G VYK KVWR+P+G+PQ
Sbjct: 580 LSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQ 639

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGKAL+N+L L++GE IT++MP PEDE    N+ ++FAT+ G VRRNKLSDF Q+NR+G
Sbjct: 640 SRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFTQVNRNG 699

Query: 673 KIAMKLD------SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           KIAMKLD      S D I+ V+ C+ ++D++LTT LGQC+RF +  +RVF GR S GVRG
Sbjct: 700 KIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRG 759

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS---GDTEEITSLKNDSSVEG 783
           I LA GD+VISM ++ H D    E   Y+KH SA RR +    GDTE     + D+  EG
Sbjct: 760 IRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEG 819

Query: 784 N---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +   +S ER  EL   E+F+LT++E G GKR S+YD+R++ R GKG+ A    K+N    
Sbjct: 820 DEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIA---HKLNAGRR 876

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L A FP+ D D+I+LV+D G LIR P  +IRIA RAT+GV +  T+ +ERVVSVER+ E 
Sbjct: 877 LAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERLAEQ 936

Query: 901 EI-VDEAESTE 910
           E  VDE E+ E
Sbjct: 937 ESDVDENETEE 947


>gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100]
 gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 941

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/902 (57%), Positives = 667/902 (73%), Gaps = 23/902 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  WNK Y K A
Sbjct: 17  IRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSENGYSWNKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ ++YDAL RM QD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL
Sbjct: 77  RIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK +  LL+DL  DTVDF+ NYD S +EP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 QKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C+A ++NP + ++ LME I GPDFPTG VI+GR GI+ AY  GRGS+V+RG  H
Sbjct: 197 GEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIMGRAGIRAAYLKGRGSVVVRGKVH 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E    DR+ ++VTEIPYQVNKA + E+IAELVREKR+  I+D+RDESDR GYRVVIELK
Sbjct: 257 VETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDVRDESDRSGYRVVIELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DV+LNQLYR+TSLQS+F+ NMVALN  +PE+ TL+  ++AF  FRE V+ RRTK+
Sbjct: 317 RDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLDFIQAFTQFRETVITRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KARDRAHVLVGLA AVAN+DEV+++IR +P+P +AR  LM R W A DI  L+ LI+
Sbjct: 377 LLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMSRDWPADDIAPLLLLIE 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    I       LS  Q +AILELRL RLT LGRD+I +EL +L  +I++ L+ILSSR+
Sbjct: 437 DPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKALADKIRDYLNILSSRA 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I++ EL ++K+E  TPRRT I++   +++DED I +EDMVVTVSH GY+KRVPLS 
Sbjct: 497 RVISIVRDELTAIKEEFATPRRTEILDVEGEVDDEDLIQKEDMVVTVSHRGYIKRVPLST 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLF SS G  YK KVWRLP+ +PQARG
Sbjct: 557 YRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAYKMKVWRLPLSAPQARG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L Q E IT+I+P PE E   + ++++FAT+ GNVRRN+L+DF ++ ++GKIA
Sbjct: 617 KALINLLPLQQDETITSILPLPE-ERDESGVFILFATRSGNVRRNELADFAEVRQNGKIA 675

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  D+I   + C + +DILLTT  GQ +RFP++ +R+F GR S GVRG+ L + D V
Sbjct: 676 MKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPVTDVRIFKGRESTGVRGVRLDEDDTV 735

Query: 736 ISMAIVLHADADYDERICYMKHMS-------AQRRLISGD---------TEEITSLKNDS 779
           IS+AI+ H +A   ER  Y+K  +        +R    GD          E + +L +  
Sbjct: 736 ISLAILRHMNATPAERAAYLKQANAMRRAAAGERAATEGDIVEQEAAAAAEAVEALDDGE 795

Query: 780 SVE----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++E     +++  R  E+   EQ++LT+SE+GFGKRTSSY++R S R GKGI A  V++ 
Sbjct: 796 AIESTDIADLTPARYGEMGAAEQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNER 855

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G L+A FPV D DQI+LV++ G LIR P+  I I  R+ +GV IF T +DERVVS E
Sbjct: 856 N--GRLIASFPVEDTDQIMLVTNGGKLIRCPIEGISITGRSAQGVTIFRTDQDERVVSAE 913

Query: 896 RI 897
            I
Sbjct: 914 LI 915


>gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 898

 Score = 1043 bits (2698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/883 (57%), Positives = 664/883 (75%), Gaps = 30/883 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  +NK + K A
Sbjct: 12  ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 72  RIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K+AH LL+D+ K+TVDF+ NYD S  EP+VL ARYPN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 AKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C A ID+P++ ++ LME++ GPDFPTG  ILGR GI+ A  TGRGS+V+RG  H
Sbjct: 192 GEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRVH 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DRE I+VTEIPYQVNKA MLE+IAELVR+K+I  I+DLRDESDR G RVVIE+K
Sbjct: 252 IEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRVVIEIK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+L QLYR+T LQ+ F VN +ALNG +PE  TL  I+ AF+AFREEV+ RRT +
Sbjct: 312 RDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTIF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P  AR  LM R+W   D++ LI LID
Sbjct: 372 ELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWPVGDVEPLIQLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    I  DG   LSE+Q +AIL+LRL RLTGL RD I +EL  +G +I+  L ILSSR 
Sbjct: 432 EPGRAI-EDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSRP 490

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  +++ EL+ ++++  TPRRT I E   + + ED I REDMVVTV++ GY+KRVPLS 
Sbjct: 491 RLFEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVTNTGYIKRVPLSA 550

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ ++DEDF++ +F+V+THT VLFFSS G  YK KV+RLP+G+PQARG
Sbjct: 551 YRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQARG 610

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L L++GE I+TIMP PEDE+SW +L+V+F T  G+VRRN LSDF ++  +GKIA
Sbjct: 611 KAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKIA 670

Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL   + ++SV+TC  E +D+LL T LG+ +RFP+  +R F  R+S GVRGI L   D+
Sbjct: 671 MKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDSTGVRGIRLDGEDE 730

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VISM+I+ H D D + R  ++K                          G++  E+ +++ 
Sbjct: 731 VISMSILRHTDYDSETRDAFLK--------------------------GDLPAEQMEKMG 764

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            ++QF+LTV+E GFGKRTS++++RI+ R G GI   D++   + G +VA FPVN  D I+
Sbjct: 765 AEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGTVVASFPVNHEDDIM 822

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LVSD G LIR+PV++IRIA R T+GV +  TA++ERVVS  R+
Sbjct: 823 LVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARL 865


>gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
 gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
          Length = 932

 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/913 (56%), Positives = 668/913 (73%), Gaps = 8/913 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   +  ++   G+  ++I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MTDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   ++ YVK AR+ G+VMGKYHPHG+ AIYD + RMAQ +S+ LLLI+GQGNFGSV
Sbjct: 61  NEQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE R+ +AA  +L DL KDTVDF+ NYDGS QEPVVL +R PN+LVNG G
Sbjct: 121 DNDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD C+A IDNP+I LD L++I+ GPDFPTG  I+GR+G + A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEIIGRSGARQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGS+++RG + IE+   +RE IV+T IPYQVNKAA++E+IAELVREKRI  +ADLR
Sbjct: 241 LMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+E+KR ASA+VILNQLYRYT LQS F VNM+ALN  +PE+  L  ++ A
Sbjct: 301 DESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGRPEQMGLREMVTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVVVRRTK+ L+KARDR HVLVGLAIAVAN+DE + IIR S +P  AR  L+ +
Sbjct: 361 FVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  L++LI D    +     + L++ Q RAIL L L+RLTGLGRD+I  E   L
Sbjct: 421 DWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEAREL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+  L+IL+SR R++ I+++EL+ V+++   PRRT IVEG  D+EDED I RE+MV+
Sbjct: 481 AGVIRGHLEILASRERVMAIVREELVQVREQFAVPRRTEIVEGDADVEDEDLIAREEMVI 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GYVKR PL+ YR Q RGGKGRSG+  ++ED VT +F  +THT +LFFSS G  YK
Sbjct: 541 TVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP+G+P +RGKA +N+L +  GE IT+I+P PEDE++W+   V+FAT+ GNVRRN
Sbjct: 601 LKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFATRSGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+ I R+GKIAMKLD  D I+ V  C   +ND+LLTT LG+C+RF    +RVFAGR
Sbjct: 661 KLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFATEEVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-----RLISGDTEEITS 774
           +S GVRGI LA+GD VISMAI+  A A   ER  Y+KH  A R          +T     
Sbjct: 721 DSTGVRGIRLAEGDSVISMAILRSAPATPAERAAYLKHAKAMRIATGEAEEGEETAAPEE 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  E  +  ER  E+   E+ ILTVS +G+GKRTS+Y+FR + R G+G+ A D++K
Sbjct: 781 EDEANGEEAALGPERLAEMGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTK 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G L   FPV++ D+I+LVSD+G LIR+PV ++R+A R T+GV+IF  + DE VVSV
Sbjct: 841 RG--GKLAGSFPVDEGDEILLVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSV 898

Query: 895 ERIRESEIVDEAE 907
           ER+ E    DE E
Sbjct: 899 ERLAEPAGDDEVE 911


>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 894

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/882 (57%), Positives = 670/882 (75%), Gaps = 29/882 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T V+I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++NK + K A
Sbjct: 12  VTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYNKPFRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDA+ RMAQ +S+RL LI+GQGNFGS+DGD  AA RYTE R+
Sbjct: 72  RIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAMRYTEARM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++AHFL++D+ KDTVDF PNYD S  EP+VL ARYPN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 ARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C A+IDNPDI  + +ME++ GPDFPTG  ILGR+GI+ A  TGRGS+V+RG  H
Sbjct: 192 GEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTILGRSGIRAAQLTGRGSVVMRGRCH 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DRE I+VTE+PYQVNKA M+E+IAELVR+K+I  ++DLRDESDR G RVVIE+K
Sbjct: 252 IEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGVRVVIEIK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+L QLY++T LQ+ F VN +ALNG +P+  TL  I+ AF+ FREEV+ RRT +
Sbjct: 312 RDAIADVVLAQLYKFTPLQTSFGVNSLALNGGRPQMMTLREIIAAFLRFREEVITRRTIF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAHVLVGL+IAVAN+D+++++IR + +P  AR +LM R W A D++ LI LID
Sbjct: 372 ELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVEPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    I  DGT  LSEVQ +AIL+LRL RLTGL RD I +EL  +G +IKE L+ILSSR 
Sbjct: 432 EPGRGI-VDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFLEILSSRP 490

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +LL +++ EL+ ++++  TPRRT I +   + + ED I REDMVVTV++ GY+KRVPLS 
Sbjct: 491 KLLEVMRNELIDMRNQFATPRRTTIEDSEFEADIEDLIAREDMVVTVTNTGYIKRVPLST 550

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ M+DEDF++ +F+ STHT VLFFSS G  YK KV+RLP+G+PQARG
Sbjct: 551 YRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVYRLPLGTPQARG 610

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++NIL L +GE I+T+MP PEDE++W +L+V FAT  G+VRRN LSDF+ I  +GKIA
Sbjct: 611 KAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSDFVDIRANGKIA 670

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  +++++V+ C+  +DILL T+LG+ +RF +  +RVF GR+S GVRGI L   DQV
Sbjct: 671 MKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTGVRGIRLDDADQV 730

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM+++ H + D + R  Y                    L+ND      ++    + +  
Sbjct: 731 ISMSVLRHVEFDMETRDAY--------------------LRND------LTGPEAERMSE 764

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ ILTV+E G+GKRTS+Y++RI+ R G+GI   D+++ N  G +VA FPV  +D+I+L
Sbjct: 765 SEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKN--GPVVASFPVGHDDEIML 822

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VSD GTLIR+PV++IRIA R T+GV++  TA++ERVVS  R+
Sbjct: 823 VSDGGTLIRMPVDDIRIAGRKTQGVIVLRTAENERVVSTARL 864


>gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48]
 gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48]
          Length = 918

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/900 (56%), Positives = 671/900 (74%), Gaps = 10/900 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI+ V+I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G   +KKYVK 
Sbjct: 14  GISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAMYEEGRTHDKKYVKS 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I G+VMG+YHPHG+ AIYDAL RMAQ +S+RLLL++GQGNFGSVDGDPPAA RYTE R
Sbjct: 74  ANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSVDGDPPAAMRYTESR 133

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +AA  L+ D+ K+TVDF  NYDG+ QEP VL +R PN+LVNG GGIAVGMATNIP HN
Sbjct: 134 MTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAGGIAVGMATNIPPHN 193

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+++ C+A++D+P++  + L+ I+ GPDFPTG  ILGR+G + A  TGRGS+++RG +
Sbjct: 194 LGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEILGRSGARQALLTGRGSVIMRGKA 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E    DRE I+VTE+PYQVNKA ++E IAE+VREKRI  I+D+RDESDRQG R+VIEL
Sbjct: 254 SVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIRDESDRQGMRMVIEL 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR AS DVILNQLYRY++LQ+ F VNM+ALN  +P++  L  +L+ F+ FREEVVVRRT+
Sbjct: 314 KRDASGDVILNQLYRYSALQTSFGVNMLALNHGRPQQMGLRKLLEIFLDFREEVVVRRTR 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKARDR HVLVGLAIAVAN+DE++ IIR S +P  AR  L  ++W A D+  LI+LI
Sbjct: 374 FELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAKNWPAGDMSPLIELI 433

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D    +   G + L+E Q RAIL L L+RLTGLGRD+I  E  +L   I E L ILSSR
Sbjct: 434 ADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTLAASIAEYLAILSSR 493

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+LGI+++EL  VK     PRR+ IV+G  D+EDED I REDMVVTV+H GYVKR PLS
Sbjct: 494 ERILGIVREELEEVKALYAEPRRSLIVDGEADIEDEDLIPREDMVVTVTHSGYVKRTPLS 553

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKGRSG+ M+DED +T ++  STH  +LFFSS G  YK KVWRLP+G+PQ++
Sbjct: 554 AYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYKLKVWRLPLGTPQSK 613

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA +N+L L++ E +T I+  PEDE++W+ L +VFAT+ G+VRRNKLSDF+ +NR+GKI
Sbjct: 614 GKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRNKLSDFVNVNRAGKI 673

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL+  D I+ V  CT++ D+LL+T  G+ +RF +  +RVF GR+S GVRG+ L + D 
Sbjct: 674 AMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEVRVFKGRDSTGVRGVRLGEDDT 733

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVEGNISEERC 790
           VISMAI+   +A   ER  Y+KH ++ R  ++G     T  +     + + + ++S ER 
Sbjct: 734 VISMAILRRVEATPAERAAYLKHAASLRAAVTGEGEEATVVVEEEAEEGAEDASLSVERI 793

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL   E+FILT+++ GFGKRTSSYD+R + R G+GI A D+SK    G LVA FPV D 
Sbjct: 794 AELGAAEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKRG--GKLVASFPVEDT 851

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDEAE 907
           DQ++LV+D G LIR PV++IR+A R T+GV IF T+  E+VVSVER+ E+   +  DEAE
Sbjct: 852 DQLLLVTDGGQLIRTPVSQIRVAGRNTQGVTIFRTSG-EKVVSVERLAETAEEDGPDEAE 910


>gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 943

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/888 (57%), Positives = 687/888 (77%), Gaps = 12/888 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G E+NK Y K A
Sbjct: 13  ISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGYEFNKPYRKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IYDA+ RM Q++++RL LI+GQGNFGS+DGD  AA RYTE R+
Sbjct: 73  RIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRAAAMRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAAH LLDD+ K+TVDF+PNYD + +EP+VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 133 AKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C A+IDNP +  + L+E++ GPDFPTG  ILGR+G++ A+ TGRGS+++RG +H
Sbjct: 193 GEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAAHLTGRGSVIMRGRTH 252

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  SG R+ I+VTE+PYQVNKA+M+EKIAELVREK++  I+D+RDESDR+G RVVIE+K
Sbjct: 253 FEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESDRRGVRVVIEVK 312

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+LNQL+RYT LQ+ F VNM+ALNG KPE   L  I++AF+ FREEV+ RRT +
Sbjct: 313 RDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLALRPIIEAFITFREEVIRRRTIF 372

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH LVGLAIAVANLD V+++IR +P+P+ AR  LM R W A D++ LI LID
Sbjct: 373 ELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWPAMDVEPLIKLID 432

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    +  DG   LSE+Q RAIL+LRL RLTGL RD +  EL  +G +I+E L IL SR+
Sbjct: 433 EPGRMV-IDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQIEEYLHILRSRA 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  I++ EL+ +K+   TPRRT + E   + + ED I RE+MVVTV++ GY+KRVPL+ 
Sbjct: 492 RLFEIMRAELVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVVTVTNTGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGG+GR+G+ MRDEDFVT +F+V+TH  +LFFSS G VYK KV+RLP+G+PQARG
Sbjct: 552 YRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYKMKVYRLPLGTPQARG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++NI+ LN+GERITT+MP PEDE +W+ L V+FAT+ GNVRRN+LSDF  +  +GKIA
Sbjct: 612 KAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRNRLSDFTNVMSNGKIA 671

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  D ++ V TCT E D+LLTT LG+ +RF +  +RVFAGR S GVRGI LA+ D+V
Sbjct: 672 MKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVFAGRTSTGVRGIRLAEDDRV 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE---GNISEERCQE 792
             ++I+ H +A  + R  Y+K  SA RR  SG+TE     ++DS+++   G +S E  ++
Sbjct: 732 NRLSILGHVEASAETRAAYLKQASALRR-ASGETEG----EDDSTLDAEPGVLSAEEFED 786

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L+ +E+F+LTV+ +GFGKRTS+Y++R++ R G+GI   ++S+ N  G +VA FP+ + DQ
Sbjct: 787 LRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERN--GTVVAAFPIANEDQ 844

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRE 899
           +++++D G LIR+PVN++RIA R T+GV +F  + D E VVSV R+ E
Sbjct: 845 VMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892


>gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 895

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/883 (57%), Positives = 664/883 (75%), Gaps = 30/883 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  +NK + K A
Sbjct: 12  ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 72  RIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++AH LL+D+ K+TVDF+ NYD S  EP+VL ARYPN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 ARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C A ID+P++ ++ LME++ GPDFPTG  ILGR GI+ A  TGRGS+V+RG  H
Sbjct: 192 GEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRVH 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DRE IVVTEIPYQVNKA MLE+IAELVR+K+I  I+DLRDESDR G R+V+E+K
Sbjct: 252 IEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVEIK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+L QLYR+T LQ+ F VN +ALNG +PE  TL  I+ AF+AFREEV+ RRT +
Sbjct: 312 RDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTIF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P  AR +LM R+W   D++ LI LID
Sbjct: 372 ELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    I  DG   LSEVQ +AIL+LRL RLTGL RD I +EL  +G +I+  L ILSSR 
Sbjct: 432 EPGRAI-EDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSRP 490

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL+ +++ EL+ ++++  TPRRT I E   + + ED I REDMVVTV++ GY+KRVPLS 
Sbjct: 491 RLMEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVTNTGYIKRVPLSA 550

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ ++DEDF+T +F+V+THT VLFFSS G  YK KV+RLP+G+PQARG
Sbjct: 551 YRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQARG 610

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L L+ GE I+TIMP PEDE++W +L+V+F T  G+VRRN LSDF ++  +GKIA
Sbjct: 611 KAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKIA 670

Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL   + ++SV+TC+ E +D+LL T  G+ +RFP+  +R F  R+S GVRGI L   D+
Sbjct: 671 MKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDSTGVRGIRLDGEDE 730

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VISM+I+ H D D + R  ++K                          G++  ++  ++ 
Sbjct: 731 VISMSILRHTDYDSETRDAFLK--------------------------GDLPADQMDKMV 764

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            ++QFILTV+E GFGKRTS++++RI+ R G GI   D++   + G +VA FPVN  D I+
Sbjct: 765 AEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGLVVASFPVNHEDDIM 822

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LVSD G LIR+PV++IRIA R T+GV +  TA++ERVVS  R+
Sbjct: 823 LVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARL 865



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLG 703
           +++  T++G  +R    ++    R G     LD   +   +++      E+DI+L +  G
Sbjct: 769 FILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHEDDIMLVSDGG 828

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           + +R P+  IR+ AGR + GV  +  A+ ++V+S A +    ++ DE
Sbjct: 829 KLIRMPVDDIRI-AGRKTQGVTLLRTAENERVVSAARLCDIGSNGDE 874


>gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510]
 gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510]
          Length = 927

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/888 (56%), Positives = 662/888 (74%), Gaps = 7/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +  K Y K A
Sbjct: 12  IAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGGYDSTKPYKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDA+ RMAQD+S+RL LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 72  RIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDPPAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAA  LLDD+ KDT+DF+ +YD S +EP V+ AR+PN+LVNG GGIAVGMATNIPTHNL
Sbjct: 132 AKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAGGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C A IDNPD+ LD LME + GPDFPTG +ILGR+G + A  TGRGSI++R  +H
Sbjct: 192 GEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLILGRSGSRAALQTGRGSIILRAKTH 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+   DR  I+ TEIPYQVNKA ++E+I E+V +K I  IADLRDESDR G RVVIELK
Sbjct: 252 FEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLRDESDRDGVRVVIELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  DV+L QL+R+T LQ+ F VNM+ALNG +PE   L+ ++ AFV FRE+V+ RRT++
Sbjct: 312 RDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGRPELMNLLDVITAFVRFREQVITRRTEF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KAR+RAH LVGLA+AVANLD ++ +IR +P+P  AR E+M R W   D+  LI+LID
Sbjct: 372 LLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNREWPVHDVGPLIELID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    +   GT  LSEVQ RAIL+LRL RLTGL RD I  EL  +  +I + L  L++R 
Sbjct: 432 EPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDVTDQIADFLATLANRP 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+GI++ EL+ +K+   TPRRT I +   + + ED I REDMVVTVS  GYVKRVPLS 
Sbjct: 492 KLMGILRDELVEMKERFGTPRRTEIQDLEFEADIEDLIQREDMVVTVSQSGYVKRVPLST 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGR+G+ M+ ED V+DLF+ +THT +L FS+ G VYK KV+RLP+G+PQARG
Sbjct: 552 YRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSNRGMVYKLKVYRLPLGNPQARG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA +N+L L  GE ITT++P PEDE++W +L+VVFAT  GNVRRN++SDF  I  +G IA
Sbjct: 612 KAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGNVRRNRMSDFANIRSNGLIA 671

Query: 676 MKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL+   E ++ V TC++ +DILL T+ G+C+RFP+  +RVFAGR S GVRGI LA GD+
Sbjct: 672 MKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGRTSTGVRGIKLADGDE 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGD-TEEITSLKNDSSVEGNISEERCQEL 793
           V+S++I+ H DA  +ER  + K    +   + G+   E   +  DS     +++ER +EL
Sbjct: 732 VVSLSILAHVDATPEERAAFFKMKRDEGLEMEGEAAPEADEVPTDSV---TLTQERYEEL 788

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K KEQ+ILTVS++G+GKR+SSY++R + R G+GI   ++ + N  G++VA FPV  N Q+
Sbjct: 789 KQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERN--GSIVAAFPVESNHQV 846

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++V++ G +IR+P++++R+A R T GV +F    DERVVSV  I E +
Sbjct: 847 MMVTNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAEED 894



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLG 703
           Y++  +  G  +R+   ++    R G+    M++  R+  I++       + +++ T  G
Sbjct: 794 YILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAFPVESNHQVMMVTNGG 853

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           Q +R P+  +RV AGR ++GV    +   ++V+S+A +   D +
Sbjct: 854 QVIRMPLHDVRV-AGRKTLGVTLFRVGADERVVSVATIAEEDGE 896


>gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
          Length = 924

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/903 (56%), Positives = 658/903 (72%), Gaps = 9/903 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+GI  +SIT+EMQ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G   +K++ 
Sbjct: 23  EEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILWSMQEQGYTHDKRHR 82

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A + G+V+GKYHPHG+ A+YDAL RMAQ +S+RL L++GQGNFGS+D DPPAA RYTE
Sbjct: 83  KSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFGSIDNDPPAAMRYTE 142

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+   A  LL D+ KDTVDF   YDG  QEP VL AR+PN+LVNG GGIAVGMATNIP 
Sbjct: 143 VRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNGAGGIAVGMATNIPP 202

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  V +ID P +  + L+ I+ GPDFPTGA I+G++G + A  TGRGS+V+R 
Sbjct: 203 HNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIMGQSGARQALLTGRGSVVMRA 262

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + +E+   DR  I+V++IP+QVNKAAM+E+IA LVREK++  IADLRDESDR G RVVI
Sbjct: 263 TTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIADLRDESDRHGIRVVI 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+V+LN LY+ + LQ+ F+ N++ALN  +PE+ TL  +LK+FV FREEVV RR
Sbjct: 323 ELKRDANAEVVLNNLYKQSPLQTSFAYNLLALNRGRPEQMTLRTVLKSFVDFREEVVTRR 382

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+LL KARDRAHVLVGLAI+VAN+DEVVR+IR +PNP  AR  LM R+W A D+  L+ 
Sbjct: 383 TKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALMGRNWPAKDLASLVA 442

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ D  +++  DG++ LSE Q RAIL+LRL RLT LGRD+I +EL SL  +I + L IL 
Sbjct: 443 LVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQSLADKIADYLQILR 502

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R R+L IIK EL  V++   TPR+T+ ++  ++MEDED I REDMVVTVSH GYVKR  
Sbjct: 503 DRDRVLTIIKDELADVRERFATPRKTQFIDA-IEMEDEDLIAREDMVVTVSHAGYVKRTS 561

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YRAQRRGGKGRSG+ M+D+DF++ LF+ +THT +LFF+  G  YK K+WRLP G P 
Sbjct: 562 LDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMAYKLKLWRLPEGGPT 621

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGKA IN+L L+QGER+T I+P P+DE+ W ++ +VFAT+ GNVRRNKLSDF  +N++G
Sbjct: 622 SRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVRRNKLSDFTNVNKAG 681

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAMKLD  D ++ V    +  DILLTT+ G  +RFP+ A+RVF+GR S GVRGI     
Sbjct: 682 KIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSGRTSTGVRGIRFKPN 741

Query: 733 DQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           D+     V+SMAI+ H D   +E   Y+KH +A RR  +G+ E   S       E  +S 
Sbjct: 742 DEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRR-AAGEGETEGSDAEAEGSEAALST 800

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           ER   ++  EQFILT +E G+GKRTSS+++R S R G+GI     S  N  G +VA FPV
Sbjct: 801 ERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTSARN--GRVVASFPV 858

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D+I+LV+D G LIR  V +IR+A R T+GV I +T + ERVVSVE + E++  D+  
Sbjct: 859 EDADEIMLVTDGGQLIRTGVADIRVAGRNTQGVKILTTRETERVVSVEHVPEAQNDDDLP 918

Query: 908 STE 910
             E
Sbjct: 919 DDE 921


>gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
 gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
          Length = 922

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/895 (55%), Positives = 666/895 (74%), Gaps = 9/895 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G +  K Y K A
Sbjct: 11  ISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKDGGYDSTKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ AIYDA+ RMAQD+S+RL LI+GQGN+GS+DGDPPAA RYTE RL
Sbjct: 71  RIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSMDGDPPAAMRYTEARL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAA FLLDD+ K+TVDF+PNYD S  EP VL A++PN+LVNG GGIAVGMATNIPTHNL
Sbjct: 131 AKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAGGIAVGMATNIPTHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C A IDNP+I +D L++I+ GPDFPTGA+ILGR+GI++AY TGRGSIV+R  + 
Sbjct: 191 GEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALILGRSGIRSAYHTGRGSIVMRAKTD 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DR  IVVTEIPYQVNKA + E+IAE+V EK +  I+D+RDESDR G RVVIELK
Sbjct: 251 IEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVRDESDRDGVRVVIELK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQL+R+T LQ+ F VNM+ALNG +PE   L  I+ AFV FRE+V+ RRT++
Sbjct: 311 RDAVADVVLNQLFRFTPLQTSFGVNMLALNGGRPELLDLKSIIAAFVRFREQVITRRTEF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH LVGLA+AVAN+DE++ +IR +P+P TAR ++M R W A D+  LI LID
Sbjct: 371 ELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAREWPALDVAPLIQLID 430

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    +   GT  LSE Q +AIL+LRL RLTGL RD I  ELN +  +I+  L IL+ R 
Sbjct: 431 EPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQVVDQIRHLLAILADRG 490

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LL I++ EL+ +K     PRRT I E   + + ED I REDMVV V+  GY+KRVP+S 
Sbjct: 491 LLLDILRGELVDMKARFGNPRRTTIEELEFEADVEDLIQREDMVVIVTQGGYIKRVPVST 550

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKGRSG+ ++ ED V+DLF+ +THT +LFF++ G VY  KVWRLP G+PQ RG
Sbjct: 551 YRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYTLKVWRLPQGTPQTRG 610

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+N+L L +G+ ITT+MP PED++SW +L+V+FAT  G VRRN+LSDF  I  +G IA
Sbjct: 611 KALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGVRRNRLSDFANIRSNGLIA 670

Query: 676 MKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733
           MKL+   E +++   C++ +D+LL+T+LG+C+RFP+  IRVF+GR S GVRGI L + GD
Sbjct: 671 MKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVFSGRTSTGVRGIKLVEDGD 730

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLI--SGDTEEITSLKNDSSVEGN--ISEER 789
           +VI M+I+ H D   ++R  Y+K     R+ +    D +E   ++ +  VE +  + +E 
Sbjct: 731 EVIGMSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAPDVEAE-PVETSLVLPQEL 789

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E++  E+ ILTVSE+GFGKRTS+Y++R++ R G+GI   D+ + N+  A+ AVFP+++
Sbjct: 790 FIEMQAAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGERNK--AIAAVFPISE 847

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            DQ++++SD G +IR+PV++IR+  R +KGV +F    DERVVSV R+ E    D
Sbjct: 848 TDQVMMISDNGQVIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSVARLAEEAAGD 902


>gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
 gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
          Length = 919

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/889 (56%), Positives = 652/889 (73%), Gaps = 6/889 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M + G    + YVK A
Sbjct: 17  IAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERPYVKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGSVDGD PAA RYTECR+
Sbjct: 77  RVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECRM 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL DL KDTVDF  NYDG  QEP VL +R PN+LVNG GGIAVGMATNIP HNL
Sbjct: 137 APPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGAGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C+ +ID PD+  D L++++ GPDFPTG  I+GR G + A  TGRGS+++RGV+ 
Sbjct: 197 GEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEIIGRAGPRQALLTGRGSVIMRGVAS 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    RE I+VTEIPYQVNKA ++E IAELVR+K+I  +AD+RDES+R G R+V+ELK
Sbjct: 257 VEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADIRDESNRDGMRIVVELK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS +VILNQLYR+T+LQS F VNM+ALN  +PE+  L  +++ FV FREEVVVRRTK+
Sbjct: 317 RDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHQLIQLFVDFREEVVVRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ +SW A D+  L++LI 
Sbjct: 377 ELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSWPAGDMLPLVELIA 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D        G + L++ Q RAIL L L+RLTGLGRD+I NE  +L   I+  L++LS R+
Sbjct: 437 DPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAAALADAIRGYLELLSDRA 496

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            ++ ++++EL+ V+++   PRR +IV+G  DMEDED IVREDMV+TV+  GYVKR PL+ 
Sbjct: 497 NIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVREDMVITVTMGGYVKRTPLAN 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG+SG+  ++ED VT +F  STH  +LFF+S G VYK KVWRLP+G   +RG
Sbjct: 557 YRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMKVWRLPLGVANSRG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA +N+L +  GE IT+I+  PEDE++W  L V+FAT+ G+VRRNKLSDF+ + R+GKIA
Sbjct: 617 KAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNKLSDFVDVRRNGKIA 676

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  D I+ V  C  + D+LLTT  G+C+RF +  +RVFA R+S GVRG+ L  GDQV
Sbjct: 677 MKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGVRGVKLLDGDQV 736

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS----VEGNISEERCQ 791
           ISMA++   DA   ER  Y+KH  A  R   G+  E T+   D       E +++ ER  
Sbjct: 737 ISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADDGDEEVGEASLTPERIA 796

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           EL   E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK    G LV  FP++++D
Sbjct: 797 ELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRG--GRLVGSFPIDESD 854

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           QI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER+ +S
Sbjct: 855 QILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLADS 903


>gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
          Length = 935

 Score = 1013 bits (2619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/902 (55%), Positives = 662/902 (73%), Gaps = 8/902 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  +SI  E++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G   +KKYVK
Sbjct: 29  QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I G+VMG+YHPHG++AIYDAL RMAQ +S+ LLL++GQGNFGSVDGDPPAA RYTE 
Sbjct: 89  SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ KAA  L+ D+ K T+DF  NYDGS +EP VL +R PN+LVNG GGIAVGMATNIP H
Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VD C+AV+D+P + ++ L+ I+ GPD+PTG  ILGR+G + A  TGRGS+V RG 
Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEILGRSGARLALMTGRGSVVTRGK 268

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE    DRE IV+TEIPYQVNK++M+E IAELVR+KRI  I+D+RDESDRQG RVV+E
Sbjct: 269 ASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVVE 328

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR AS DVILNQLYR+TSLQ+ F VNM+AL+  +P++  L  +L  F+ FRE+VVVRR 
Sbjct: 329 LKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGRPQQMGLRRLLDIFLDFREDVVVRRI 388

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKARDR HVLVG+ IAVAN+DEV+ IIR S +P  AR  L  ++W + D+  LIDL
Sbjct: 389 RFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLIDL 448

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I D    +     + L++ Q RAIL L L+RLTGLGRD+I +E  +L   I   L+ILSS
Sbjct: 449 IADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEILSS 508

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ I+++EL+ VK +   PRRT+I E   D+EDED I REDMVVTV+H GYVKR PL
Sbjct: 509 RERIMAIVREELVEVKAQFAVPRRTQIAESEGDIEDEDLIPREDMVVTVTHSGYVKRTPL 568

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S+YR Q RGGKGRSG+ M+DED +  ++  STH  +LFFSS G  +K KVWRLP+G+PQ+
Sbjct: 569 SMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKVWRLPVGNPQS 628

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA +N+L +  G+ I+ I+  PE+E+ W+ L ++FAT+ G++RRNKLSDF+ +NR+GK
Sbjct: 629 KGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLSDFVNVNRAGK 688

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL+  D I+ V  C+ + D+LL+T  G+ +RF +  +RVF GR+S GVRG+ L   D
Sbjct: 689 IAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTGVRGVRLLGDD 748

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLI--SGDTEEITSLKNDSSVEGNISE---E 788
           +VISMAI+  +DA   ER  Y+K  SA+R  +  S D E    +++DS    +I+E   E
Sbjct: 749 KVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEETSDIAELTDE 808

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  ELK +E+FILT+S+ GFGKR+SS++FR + R G+GI A D+SK    G L A FP+ 
Sbjct: 809 RYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKRG--GKLAACFPIE 866

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             D I+LV+  G LIR  V ++RIA R T+GV IF TA  ERVVSVER+ +S   DEA +
Sbjct: 867 ATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTIFRTAGGERVVSVERLPDSG-EDEAGT 925

Query: 909 TE 910
            E
Sbjct: 926 DE 927


>gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756]
 gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756]
          Length = 918

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/901 (55%), Positives = 656/901 (72%), Gaps = 5/901 (0%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH     +     I  ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M +
Sbjct: 4   EHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHE 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G    + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGSVDG
Sbjct: 64  QGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGSVDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTECR+   A  LL DL KDTVDF  NYDG  QEP VL AR PN+LVNG GGI
Sbjct: 124 DMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGAGGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+D C+ +ID P+I  D L++++ GPDFPTG  I+GR G + A  
Sbjct: 184 AVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEIIGRAGPRQALL 243

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+++RGV+ +E     RE I+VTEIPYQVNKA ++E IAELVR+K++  IAD+RDE
Sbjct: 244 TGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADIRDE 303

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+R G R+VIELKR AS +VILNQLYR+T+LQS F VNM+ALN  +PE+  L  +L+ FV
Sbjct: 304 SNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHKLLQLFV 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ +SW
Sbjct: 364 EFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSW 423

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A D+  L++LI D        G + L++ Q RAIL L L+RLTGLGR++I NE  +L  
Sbjct: 424 PAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAETLAD 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  L++LS R+ ++ ++++EL+ V+++   PRR +IV+G  DMEDED IVREDMV+TV
Sbjct: 484 AIRGYLELLSDRANIMAVVREELVEVREKFAVPRRCQIVDGDADMEDEDLIVREDMVITV 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR PL+ YR Q RGGKG+SG+  ++ED VT +F  STH  +LFF+S G VYK K
Sbjct: 544 TMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMK 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           VWRLP+G   +RGKA +N+L +  GE IT+I+  PEDE++W+ L V+FAT+ G+VRRNKL
Sbjct: 604 VWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRRNKL 663

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF+ + R+GKIAMKLD  D I+ V  C  + D+LLTT  G+C+RF +  +RVFA R+S 
Sbjct: 664 SDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDST 723

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSLKNDSS 780
           GVRG+ LA+GD+VISMA++   DA   ER  Y+KH  A  R     GD   + + + +  
Sbjct: 724 GVRGVRLAEGDEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEGDDAPVAAEEGEED 783

Query: 781 VEG-NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +   +S ER  EL   E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK    G
Sbjct: 784 ADETTLSPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRG--G 841

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV  FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER+ +
Sbjct: 842 RLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLAD 901

Query: 900 S 900
           S
Sbjct: 902 S 902


>gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31]
 gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31]
          Length = 922

 Score = 1006 bits (2601), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/888 (55%), Positives = 648/888 (72%), Gaps = 5/888 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M + G    + YVK A
Sbjct: 21  VTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERSYVKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGSVDGD PAA RYTECR+
Sbjct: 81  RVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECRM 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL DL KDTVDF+ NYDG  QEPVVL +R PN+LVNG GGIAVGMATNIP HNL
Sbjct: 141 APPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VD C+ +ID PD+  D L++++ GPDFPTG  I+GR G + A  TGRGS+++RG++ 
Sbjct: 201 GEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEIIGRAGPRQALLTGRGSVIMRGLAT 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    RE I++T IPYQVNK+ ++E IAE+VR+KRI  ++D+RDES+R G R+V+ELK
Sbjct: 261 VEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEGVSDIRDESNRDGMRIVVELK 320

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS +VILNQLYR+T+LQS F VNM+ALN  +P +  L  ++  FV FREEVVVRRTK+
Sbjct: 321 RDASGEVILNQLYRFTALQSSFGVNMLALNRGRPSQMGLRELIDIFVKFREEVVVRRTKF 380

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ ++W A D+  L++LI 
Sbjct: 381 ELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKAWPAGDMLPLVELIA 440

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D        G + L++ Q RAIL L L+RLTGLGRD+I NE  SL   IK  LD+LS R+
Sbjct: 441 DPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAASLAEAIKGFLDLLSDRA 500

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            ++ ++++EL+ V+++   PRR +IV+G  D+EDED IVREDMV+TV+  GYVKR PL+ 
Sbjct: 501 NIMAVVREELVEVREKFAIPRRCQIVDGDADVEDEDLIVREDMVITVTLGGYVKRTPLAA 560

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG+SG+  + ED VT +F  STH  +LFF+S G VYK KVWRLP G   +RG
Sbjct: 561 YRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSGGKVYKMKVWRLPQGVANSRG 620

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA +N+L +  GE IT+I+  PEDE++W+ L V+FAT+ G+VRRNKLSDF+ + R+GKIA
Sbjct: 621 KAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATRSGSVRRNKLSDFVDVRRNGKIA 680

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  D I+ V  C    DILL T  G+C+RF    +RVFA R+S GVRG+ LA GD V
Sbjct: 681 MKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEVRVFASRDSTGVRGVRLAPGDSV 740

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV---EGNISEERCQE 792
           ISM+++ + DA   ER  Y+KH  A  R +  + +E  +   DS     E +++ ER  E
Sbjct: 741 ISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAPAAVEDSEEDVGEASLTPERIAE 800

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+ +LTVS +GFGKRTS+YD+R + R G+G+ A D+SK    G LV  FPV+++DQ
Sbjct: 801 LGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDLSKRG--GKLVGSFPVDESDQ 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           I+LV+D G LIRVPV++IR+A+R T+GV IF TA DE VVSVER+ E+
Sbjct: 859 ILLVTDAGQLIRVPVSQIRVAARNTQGVTIFRTAADEHVVSVERLAET 906


>gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 913

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/887 (55%), Positives = 654/887 (73%), Gaps = 7/887 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KCA
Sbjct: 6   ISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+G++HPHG+A++Y AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE ++
Sbjct: 66  RVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL D+ KDTVDF+PNYD    EPVVL AR PN+LVNG GGIAVGMATNIP HNL
Sbjct: 126 APAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  VA++D+PD+  DAL++I+ GPDFPTG  I+GRT  +NA   GRGS+++RG + 
Sbjct: 186 REVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGKAS 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DR+ I++TE+P+QVNK  ++E+IAE+VREKR+  IAD+RDESDR G R+VIELK
Sbjct: 246 IEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS DVILNQLYRYT+LQS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR K+
Sbjct: 306 RDASGDVILNQLYRYTALQSSFGVNMLALNHGRPEQMGLRKLLELFLDFREEVVVRRVKF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  ++W   D+  L++LI 
Sbjct: 366 ELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALVELIA 425

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    +     + L++ Q RAIL L L+RLTGLGRDDI  E  +L   I+  L ILS R 
Sbjct: 426 DPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTILSDRK 485

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II+++LL VKD+    RRT I EG  +MEDED I REDMVVTV+H GYVKRV L+ 
Sbjct: 486 NVLAIIREDLLLVKDQFGVDRRTLIGEGDAEMEDEDLIPREDMVVTVTHSGYVKRVALNA 545

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKGRSG+ M+DED VT +F  STHT VLFF++ G  YK K WRLP+G+PQ+RG
Sbjct: 546 YRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSRG 605

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA +N+L +  G+ I  ++P PEDE++W +  ++FAT+ G+VRRNKLSDF  +NR+GKIA
Sbjct: 606 KAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRNKLSDFATVNRAGKIA 665

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D ++ V  CT E+D+LLTT LG+ +RF    +RVF GR+S GVRGI L  GD V
Sbjct: 666 MKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGIRLQDGDTV 725

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEE-ITSLKNDSSVEGN--ISEERCQ 791
           ISMAI+   DA  +ER  Y+KH +A R+ ++G D EE + +++ D    G+  +S ER  
Sbjct: 726 ISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEADDEEAGDAALSVERIA 785

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVNDN 850
           EL   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +      G  L A FPV ++
Sbjct: 786 ELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLG--GRAGTRLAAAFPVEES 843

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D ++LV+D G +IR PV+++RI  R+++GV IF T KDE+VVSVER+
Sbjct: 844 DDLMLVTDGGQMIRTPVSQVRIVGRSSQGVTIFRTGKDEKVVSVERL 890


>gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
 gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
          Length = 927

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/902 (53%), Positives = 668/902 (74%), Gaps = 19/902 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G +W + Y K A
Sbjct: 11  IAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGYDWTRPYRKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG+YHPHG++AIYDA+ RMAQD+S+RL L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 71  RIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAA  LL D+ K+TVD+ PNYD + +EP VL A YPN+LVNG GGIAVGMATNIP HNL
Sbjct: 131 AKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVGMATNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD C+A++DNP I +D L+ ++ GPDFPTG +ILGR+GI+ AY TGRGS+V+RG + 
Sbjct: 191 GEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLILGRSGIREAYHTGRGSVVMRGRAE 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   DR  IVVTEIPYQVNK+ ++E+I E+VR+K +  I+DLRDESDR G RVV+ELK
Sbjct: 251 IEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDRDGVRVVVELK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LNQLYRYT LQ+ F VNM+ALN  +P +  L  ++ AFV FREEV+ RRT++
Sbjct: 311 RDAIGEVVLNQLYRYTQLQTSFGVNMLALNRGRPVQMNLRDVIFAFVEFREEVITRRTRF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL+KAR+RAHVL GL +A+ NLD V+ +IR +P+   ARR+L   +W A+D+ D I +ID
Sbjct: 371 LLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPATDVIDFIAIID 430

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + +  +GT  LS+ Q RAIL+LRL RLTG+ R  + +E   +   IK+ LDIL+SR 
Sbjct: 431 DPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIKDYLDILTSRP 490

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL+G+++ ELL  ++     RRT I+E   + + ED I REDMVVTVS+ GY+KRVPL+ 
Sbjct: 491 RLMGVLRDELLQTREAWANDRRTEIMESEFEHDIEDLIAREDMVVTVSYSGYIKRVPLAT 550

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGR+G+  RDED+V  L++ ++H+ +LFF+S G VY+ K +RLP G+PQ+RG
Sbjct: 551 YRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKTYRLPEGTPQSRG 610

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L +GE I T+MP P DESSW+ L+V+FAT  G +RRN LSDF  INR+GK A
Sbjct: 611 RPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALSDFTNINRAGKRA 670

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKLD  D +++V  C + +D+LL  + G+ +RF ++ +R+F GR+S+GVRGI LAKGD+V
Sbjct: 671 MKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVRLFRGRDSLGVRGIRLAKGDEV 730

Query: 736 ISMAIVLHAD-----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +SM+I+ H D      + +ER  Y++  +  RR  SG+ +E     + S+ +  + E+R 
Sbjct: 731 VSMSILHHVDYESVDGEQNERDVYLRQAAWIRRG-SGEGDE-----DASAPDVMLREDRF 784

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   E+F+L+V+EKG+GKRTS++++R++ R G+GI + DV+  N  G +V  FPV   
Sbjct: 785 IALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKN--GPVVTAFPVTPT 842

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------EIVD 904
           DQI+LV+D G +IR PV++IR+A+R T+GVV+F   +DE+VVSV  + E+      E+ D
Sbjct: 843 DQIMLVTDGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGENGDDDNVEVAD 902

Query: 905 EA 906
           EA
Sbjct: 903 EA 904


>gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3]
          Length = 675

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/665 (72%), Positives = 568/665 (85%), Gaps = 1/665 (0%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAA
Sbjct: 10  DVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAA 69

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+
Sbjct: 70  HSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVI 129

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE  
Sbjct: 130 DGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPM 189

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
            GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+
Sbjct: 190 RGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDAN 249

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL K
Sbjct: 250 AEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRK 309

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  +
Sbjct: 310 ARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRH 369

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  
Sbjct: 370 RINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQT 429

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I+K EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQ
Sbjct: 430 IVKDELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQ 489

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALI
Sbjct: 490 RRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALI 549

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L  GERITTI+P PEDE SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL+
Sbjct: 550 NMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLE 609

Query: 680 SR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM
Sbjct: 610 EEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISM 669

Query: 739 AIVLH 743
            IV H
Sbjct: 670 TIVGH 674



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSS-------VEGNISEERCQELKLKEQFILTVSEK 806
           Y+  +S++ R+ +   +E+T+++++         V+G + E   ++L  +E  ++TVS  
Sbjct: 417 YLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIVDGGL-EMDDEDLIAREDMVVTVSHL 475

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+ KR     +R   R GKG         + +  L   F VN +  ++  S +G + +  
Sbjct: 476 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRL---FVVNTHTPVLFFSSRGIVYKEK 532

Query: 867 VNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
           V  + I +  ++G   + +   A  ER+ ++  + E E
Sbjct: 533 VWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDE 570


>gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 923

 Score = 1004 bits (2595), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/897 (56%), Positives = 650/897 (72%), Gaps = 11/897 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G   +K Y K A + 
Sbjct: 14  VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG+YHPHG++AIYDALARMAQ +S+ L L++GQGNFGS+DGDPPAA RYTE R+   
Sbjct: 74  GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTV+FR NYDGS QEPVVL ARYPN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  VA++D PDI    L+E +  PDFPTG  I+GR+G + A   GRGS+++R  + IE 
Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKALLEGRGSVILRAKTSIED 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               RE I+V EIPYQVNKA M+EKIAELVR+KRI  I+DLRDESDR G RVVIELK+ A
Sbjct: 254 IRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIELKKDA 313

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+VILNQLYR++ LQ+ F VNM+AL G +P++  L   L+ F+  R+EVVVRRTK+ L 
Sbjct: 314 NAEVILNQLYRWSPLQTSFGVNMLALIGGRPQQAGLRVFLETFIHHRKEVVVRRTKFDLR 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDRAHVL+GLA+AVAN+DE++ +IR +P+P+TAR++L  ++W A D+  L++L+ D  
Sbjct: 374 KARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVELVADPR 433

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             I  DG + L+E Q +AIL+LRL RLT LGRD+I +E N L   I + LDIL S +R+ 
Sbjct: 434 SQI-RDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRSPTRIR 492

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ ELL  K      RR+ I+EG L +EDED I REDMVVT++H GYVKR  LS YRA
Sbjct: 493 DIIRNELLDSKASFGVERRSAIIEGDLGIEDEDLIPREDMVVTLTHGGYVKRTALSTYRA 552

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGGKGR+G+ M+DEDFV  LF+ STH  +LFFSS G VYK K WRLP+G+P  +GK L
Sbjct: 553 QNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWRLPLGAPNTKGKYL 612

Query: 619 INIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            N+L SLN G  IT++M  PEDE SW+   V+FAT  G VRRNKLSDF+Q+NR+GKIAMK
Sbjct: 613 TNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRRNKLSDFVQVNRNGKIAMK 672

Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           LD    +IL V  C ++ D+LL +  G+ +RFP+  +RVFA RNS GVRGI L + D++I
Sbjct: 673 LDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFASRNSTGVRGIRLKENDRLI 732

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDSSVEGNI--SEERCQEL 793
           SMAI+ H D   DE   YM+H +A RR    + ++ + S   D     ++  S ER  EL
Sbjct: 733 SMAILNHIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVALSPERIAEL 792

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E+F+LTV++ G GKR+S+YD+R+  R  +G+ A D+SK+ E   L A FPV D D +
Sbjct: 793 GAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKVKE---LAACFPVIDGDTV 849

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + V+D G LIR PV+ +RIA+RATKGV +   A+ E+VVSV RI ESE  D+A + E
Sbjct: 850 MAVTDGGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVVSVVRIAESE--DDASAEE 904


>gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
 gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
          Length = 927

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/897 (54%), Positives = 654/897 (72%), Gaps = 7/897 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KCA
Sbjct: 22  ISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKCA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+L++GQGNFGSVDGD PA+ RYTE ++
Sbjct: 82  RVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKM 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L+ D+ KDTVDF+PNYD    EPVVL +R PN+LVNG GGIAVGMATNIP HNL
Sbjct: 142 APAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  +A++D+P++  DAL++I+ GPDFPTG  I+GRT  +NA   GRGS+++RG + 
Sbjct: 202 GEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGRAS 261

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+   DRE IVVTE+PYQVNK  ++E+IAE+VREKR+  I+D+RDESDRQG R+VIELK
Sbjct: 262 VEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLEGISDVRDESDRQGMRIVIELK 321

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS DVILNQL+RYT++QS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR K+
Sbjct: 322 RDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRDLLQIFLDFREEVVVRRVKF 381

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  + W   D+  L++LI 
Sbjct: 382 ELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEARERLQAKPWPVGDMMALVELIA 441

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    + +  ++ L++ Q RAIL L L+RLTGLGRDDI  E N L   I+  L ILS R 
Sbjct: 442 DPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIFGEANGLADTIQGHLTILSDRK 501

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II+ +L+ VKD+   PRRT I EG  +MEDED I REDMVVTV+H GYVKRV L+ 
Sbjct: 502 NVLAIIRDDLIDVKDKFAVPRRTLIGEGDGEMEDEDLIPREDMVVTVTHGGYVKRVALNA 561

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG+SG+ M+DED +T +F  STHT VLFF++ G  YK K WRLP+G+PQ+RG
Sbjct: 562 YRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSRG 621

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA +N+L +  G+ I  ++P PEDE++W +  ++FAT  G+VRRNKLSDF  +NR+GKIA
Sbjct: 622 KAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSSGDVRRNKLSDFATVNRAGKIA 681

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D ++ V  CT ++D+LLTT LG+ +RF    +RVF GR+S GVRG+ L  GD+V
Sbjct: 682 MKLEGDDRMVGVGLCTADDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGVRLQDGDEV 741

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNISEERCQ 791
           ISMAI+   DA  +ER  Y+KH +A R+ ++G   E      +   D   +  ++ ER  
Sbjct: 742 ISMAILGRVDATPEERSAYVKHANAMRKALAGAEAEEDVAAPAEAEDEVADAALTVERIA 801

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVNDN 850
           EL   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +      G  L A FPV + 
Sbjct: 802 ELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLG--GRAGTRLAAAFPVEET 859

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D ++LV+  G +IR  ++++RI  R+++GV IF T KDE+VVSVER+ ES   DEA+
Sbjct: 860 DDLLLVTSGGQMIRTRMDQVRIVGRSSQGVTIFRTGKDEKVVSVERLPESGGSDEAD 916


>gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264]
 gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 933

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/898 (54%), Positives = 649/898 (72%), Gaps = 8/898 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KCA
Sbjct: 31  IAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKCA 90

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+LI+GQGNFGSVDGD PA+ RYTE R+
Sbjct: 91  RVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEARM 150

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL D+ KDTVDF+PNYD    EPVVL AR PN+LVNG GGIAVGMATNIP HNL
Sbjct: 151 APAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHNL 210

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VD C+A++D+P++  DAL++I+ GPDFPTG  ILGRT  +NA   GRGS+V+RGV+ 
Sbjct: 211 GEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEILGRTAPRNALRDGRGSVVVRGVAS 270

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E    DRE IVVTE+P+QVNK  ++E+IAE+VREKR+  I+D+RDESDR G R+VIELK
Sbjct: 271 VETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIELK 330

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS DVILNQL+RYT++QS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR K+
Sbjct: 331 RDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRKLLEVFLDFREEVVVRRVKF 390

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  ++W   D+  L++LI 
Sbjct: 391 ELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALVELIA 450

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    +    ++ L++ Q RAIL L L+RLTGLGRDDI  E   L   I+  L ILS R 
Sbjct: 451 DPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTILSDRK 510

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II+++LL V+++   PRRT I EG  ++EDED I REDMVVTV+H GYVKRV L+ 
Sbjct: 511 NILAIIREDLLDVRNQFAVPRRTLIGEGDFELEDEDLIPREDMVVTVTHGGYVKRVALNA 570

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG+SG+ M+DED +T +F  STHT VLFF++ G  YK KVWRLP+G+P +RG
Sbjct: 571 YRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVWRLPLGAPTSRG 630

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA +N+L +  G+ I  ++P PEDE++W +  ++FAT+ G+VRRNKLSDF  +NR+GKIA
Sbjct: 631 KAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSDFATVNRAGKIA 690

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           MKL+  D ++ V  CT E+D+LLTT  G+ +RF    +RVF GR+S GVRG+ L   D V
Sbjct: 691 MKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGVRGVRLQGDDAV 750

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND--SSVEGN---ISEERC 790
           ISMA++   DA  DER  Y+KH +A R+      +E T ++ D   + EG    IS ER 
Sbjct: 751 ISMAVLGRVDATPDERAAYVKHANAMRKATGESDDETTGVEADDEGAEEGGDAPISPERI 810

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849
             L   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +      G  L A FPV +
Sbjct: 811 AALGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLG--GRAGKRLAAAFPVEE 868

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D ++LV+  G +IR  V ++RI  R+++GV IF TA+ ERVVSVER+ E+   DE E
Sbjct: 869 SDDLLLVTSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEGERVVSVERLAETGGGDEPE 926


>gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654]
          Length = 917

 Score =  981 bits (2535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/884 (55%), Positives = 638/884 (72%), Gaps = 10/884 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G   +K Y K +R 
Sbjct: 25  SITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNTHDKPYRKSSRP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
             + MG+YHPHG+AAIYDALARM QD+S+ L L++GQGNFGS+DGD PAA RYTE R++K
Sbjct: 85  VADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDGQGNFGSMDGDKPAAFRYTEVRMEK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           AA  LL+D+ KDTVDF+ NYDG  +EP+VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 AAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I++PDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  + +E
Sbjct: 205 VVDATLAMIESPDISDERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVILRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV E+P+QVNKA M+EKIA+LVR+K++  IA ++DESDR G RVVIELKR 
Sbjct: 265 EIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKLEGIAAIQDESDRLGVRVVIELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQL+R+T LQ+ F  NM+ALNG KPE+ TL   L+ F+ FREEVV RRT +LL
Sbjct: 325 ATPEVVLNQLFRFTQLQTSFGCNMLALNGGKPEQLTLRDFLRHFITFREEVVARRTAFLL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KARDR+H+L GLA+AV+N+DEVV  IR S +   AR +LM R W A DI D I L+DD 
Sbjct: 385 RKARDRSHILCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAEDIADYIRLVDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +I+E LDIL SR R+
Sbjct: 445 THTMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLDILRSRDRI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL +VKDE   PRR+ IVE   DM+DED I REDMVVT++  G+ KR PL+ YR
Sbjct: 505 MAIISDELTAVKDEFAVPRRSEIVEWSGDMDDEDLIEREDMVVTITQSGWAKRTPLAEYR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q+RGGKG SG+  +DED +T LF+ +THT +LFF++ G  YK K WRLP+G   +RGKA
Sbjct: 565 EQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFTTDGMAYKLKTWRLPLGGRTSRGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE+ W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 684

Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS-LAKGD 733
            +  DE   +++   C + +D++L T  G+ +RFP+  +RVF  RNS GVRGI  L K D
Sbjct: 685 FEGEDENTRLINARICDENDDVMLVTNKGRAIRFPVPDVRVFNSRNSTGVRGIRLLGKDD 744

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM+++ H DA  +ER  Y+K     RR ++G  E   S   D +VEG I++ER +E+
Sbjct: 745 EVVSMSVIRHFDATSEERTAYLK----MRRQMAGADETDDSDDEDEAVEGAITQERFEEM 800

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +  E+ ILT++EKG GK +SS+D+ +  R G+G+  T  +K    G LVA FPV   DQ+
Sbjct: 801 QAAEELILTITEKGLGKLSSSHDYPVRGRGGQGV--TAFTKAMPGGDLVACFPVGMEDQV 858

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L + KG  IR PVN I   SR   GV +F+T K E VVSV  I
Sbjct: 859 MLATSKGQSIRCPVNGISFRSRGAGGVKVFNTGKGESVVSVAWI 902


>gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
          Length = 928

 Score =  971 bits (2510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/896 (54%), Positives = 641/896 (71%), Gaps = 12/896 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 41  TVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARP 100

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 101 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 160

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+L D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 161 PAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 220

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E
Sbjct: 221 VVDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 280

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKA+M+EKIAE VREKRI  +A ++DESDR G RVV+ELKR 
Sbjct: 281 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 340

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT Y L
Sbjct: 341 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYNL 400

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM R W ASDI   I LIDD 
Sbjct: 401 RKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIRLIDDP 460

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSEVQ RAILELRL RLT LG  ++ +EL  L  +IKE L+ILSSR R+
Sbjct: 461 THTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAAKIKEYLEILSSRERI 520

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V++    PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 521 MGIIADELTEVRNSFAVPRRTEIVDWSGDMDDEDLIEREDMVVTVTSGGYIKRTPLADFR 580

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP G   A+GKA
Sbjct: 581 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTAKGKA 640

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    E  WN+L ++FAT  G VRRN+LSDF  + R+GKIAMK
Sbjct: 641 IVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVRRNRLSDFTNVMRNGKIAMK 700

Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +  +E   +++   C++++DI+L T  G+ +RFP + +RVF  RNSVGVRGI L  GD+
Sbjct: 701 FEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGDE 760

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H+    ++R  Y+K     RR ++G T+E  S   D+  + N S E   E+ 
Sbjct: 761 VVSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDEDAS-DEDAVEDPNFSTELFAEMS 815

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++  G GK +SS+D+ +  R G G+ A D  K    GALVA FPV  +DQI+
Sbjct: 816 AAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGALVASFPVELDDQIM 873

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           L + KG  IRVPV+ I   SR+  GV IF+T K E VVSV  I ++   D+ E+ E
Sbjct: 874 LATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNG--DDEETVE 927


>gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
 gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
          Length = 908

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/896 (54%), Positives = 632/896 (70%), Gaps = 15/896 (1%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++ E  + G  +VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G  
Sbjct: 4   NTPERPQYGGPTVSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNT 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  A
Sbjct: 64  HDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  LL D+ KDTVDF+ NYDG   EP VL AR+PN+LVNG GGIAVGM
Sbjct: 124 AMRYTEVRMDKPAAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAGGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV D  +A+I+NPD+  + L+E I GPDFPTG ++LGR+G + AY  GRG
Sbjct: 184 ATNIPPHNLGEVCDATLALIENPDLGSEDLIEYIPGPDFPTGGIMLGRSGARKAYIEGRG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+VIR  + IE+   DR  IV+ EIPYQVNKAAM+EKIAE VREKRI  IA ++DESDR 
Sbjct: 244 SVVIRSKTRIEEIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQDESDRH 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL G L AF+ FRE
Sbjct: 304 GVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLHGFLSAFITFRE 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KARDR+HVL GLA+AV+N+DEVV  IR S +   AR +LM R W A D
Sbjct: 364 EVVARRTAFELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAGD 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           I + I LIDD ++T   DGT  LSE Q RAIL+LRL RLT LG  ++ +EL  L  +IKE
Sbjct: 424 ILEYIALIDDPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQELAAKIKE 483

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL+SR R++ II  EL  VK++   PRRT+IV+   DM+DED I REDMVVTV+  G
Sbjct: 484 YLAILASRERIMEIISTELREVKEQFSVPRRTQIVDWSGDMDDEDLIEREDMVVTVTQGG 543

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  L+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRL
Sbjct: 544 YIKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 603

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+G   ++GKA++NIL + QG  I  IMP    E  W++L V+FAT  G+VRRN LSDF 
Sbjct: 604 PLGGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGDVRRNALSDFT 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + R+GKIAM L    E+++   C + +DI+L T  G+ +RFP + +RVF GR S GVRG
Sbjct: 664 NVKRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVFKGRKSTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLKNDSSVEG 783
           I L   D+V+SM+++ H DA  DER  Y+K     RR ++G   D EE        +  G
Sbjct: 724 IRLQGDDRVVSMSVIRHFDASADERAAYLK----MRRALAGAPDDGEE------PEAAAG 773

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +I+ +R +E++  E  ILT+S +G GK +SS+D+ +  R G G++A D  K    G LVA
Sbjct: 774 DITPDRFEEMQAAENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGDLVA 831

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            FPV  +DQI+L + +G  IRVPV+ I   SR+  GV +F T K E VVSV  I E
Sbjct: 832 SFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVVSVAWIAE 887


>gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 940

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/898 (52%), Positives = 646/898 (71%), Gaps = 9/898 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V++ +EM  SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G   +K Y K A
Sbjct: 22  LMPVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI+G+VMGKYHPHG+AAIYDAL R+AQ +SLR+ LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 82  RINGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARL 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A FLL+D+ +DTVDF+PNYD S  EP VL A YPN+LVNG  GIAVGMAT IPTHN 
Sbjct: 142 ARSASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNP 201

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  +A+IDNPDI LD LM +I GPDFPTG +ILGR+GI++A+ TG+GSI +R  + 
Sbjct: 202 TEVIDATLAMIDNPDITLDELMTVIPGPDFPTGGLILGRSGIRSAFETGKGSITVRARTD 261

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G R+ IV++EIPYQVNKA + E++AELVR K+I  I+D+RDESDR G RVVIELK
Sbjct: 262 FEEVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELK 321

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ DV+LN L+R+T LQ  + +NM+AL+G +P    L  +L  F+ FRE+V++RR ++
Sbjct: 322 RDATPDVVLNHLFRFTQLQISYGINMLALDGGQPRLMGLRDVLSTFIRFREDVILRRARF 381

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+  +AR  LM+R W A+D+  L+ LID
Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    +    T+ L+EVQ R ILELRL RLTGL RD I NE+  +   I E L+I+ S  
Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + ++++EL  ++ EL++PRR+ I + L D +DE  I    MVVT++  G++KR PL V
Sbjct: 502 RRMEVMREELAVIRAELNSPRRSEINDSLADQDDESLIEPGQMVVTITRDGFIKRTPLDV 561

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG+GR+   MR +D VT  F   TH  VLFFSS G  Y++KVWRLP   P A+G
Sbjct: 562 FRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKG 621

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           +AL+N+L     + IT ++P P+DES W  L++VFAT  G +RRN+LSDF  +  SG IA
Sbjct: 622 RALVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKNVRASGLIA 681

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGD 733
           MKLD  D ++ V TC + +DI+L ++LG+C+RF  +   +RVFAGR S GVRG+ LA+GD
Sbjct: 682 MKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGD 741

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS---LKNDSSV---EGNISE 787
           +VIS++++ H +A  +ER  Y+++ SA+RR  +G+ ++I +     +DS V   +  +S 
Sbjct: 742 EVISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVTVDDTALSP 801

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           ER   L+  E+F+LTV+  GFGKR+S+YD+R+S R G+GI   +++  N   A+ A FPV
Sbjct: 802 ERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNG-RAVAATFPV 860

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              D ++LV+D G LIRVP +++RI  R+T GV +F   KDE V SV  + E+E VD+
Sbjct: 861 RPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDD 918


>gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12]
 gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 913

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/880 (55%), Positives = 628/880 (71%), Gaps = 6/880 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G    K Y K AR 
Sbjct: 24  TISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHEKAYRKSARP 83

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 84  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 143

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 144 PAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 203

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I+ PD++++ LM+ I  PDFPTG  ILGR G + AY  GRGS++IR  + IE
Sbjct: 204 VIDATLALIETPDLEVEDLMQYIPAPDFPTGGQILGRGGARKAYLEGRGSVIIRAKTRIE 263

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNK++M+EKIAELVREKRI  IA ++DESDR G RVVIELKR 
Sbjct: 264 ELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDESDRVGVRVVIELKRD 323

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F++FREEVV RRT Y L
Sbjct: 324 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLKDFLSSFISFREEVVARRTAYDL 383

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR +LM R W A+DI D I LIDD 
Sbjct: 384 RKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAADIADYIRLIDDP 443

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +I+E LDIL SRSR+
Sbjct: 444 THTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAAKIQEYLDILRSRSRI 503

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  VKD+   PRRT I +   DMEDED I REDMVVTV+  GY+KR PL  +R
Sbjct: 504 MAIISDELREVKDQFAVPRRTEITDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLVEFR 563

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG +G+  +++D VT LF+ +THT +L F++ G VYK K WRLP G   ARGKA
Sbjct: 564 AQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTTDGMVYKLKTWRLPSGGRNARGKA 623

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+N+L ++ G  I  IMP    E  W +L +VFAT  G+VRRN LSDF  + R+GKIAMK
Sbjct: 624 LVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSAGDVRRNALSDFTNVMRNGKIAMK 683

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L     ++    C++E+D++L T LG+ +RF  + +RVF GR+S GVRG+ LA+GD+V+S
Sbjct: 684 LPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVRVFKGRDSTGVRGVRLAEGDRVVS 743

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA++ H  AD  ER  Y+K     RR ++G +EE  S   D+   G +S ER  E+   E
Sbjct: 744 MAVIRHFVADPQERAAYLK----MRRAVAGLSEEAESEDEDTVEAGQLSPERYAEMSAAE 799

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++E G GK +SS+D+ +  R G+G+ A D  K    G LVA FPV  +DQI+L +
Sbjct: 800 DLILTITEGGTGKISSSHDYPVRGRGGQGVTAMD--KAMRGGPLVACFPVEIDDQIMLAT 857

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             G  IR PV+ I   SRA  GV +F+TA  E+VVSV  I
Sbjct: 858 STGQSIRCPVDGISFRSRAAGGVKVFNTAPGEQVVSVAYI 897


>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
 gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040]
          Length = 912

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/896 (54%), Positives = 639/896 (71%), Gaps = 12/896 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 25  TVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+L D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I++PD+  + L+E + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E
Sbjct: 205 VVDATLALIEDPDLTSEQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKA+M+EKIAE VREKRI  +A ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT Y L
Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYNL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R W A+DI   I LIDD 
Sbjct: 385 RKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARHKLMTRRWPAADIAGYIRLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSEVQ RAILELRL RLT LG  ++ +EL  L  +IKE L+ILSSR R+
Sbjct: 445 THTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILSSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 505 MSIIADELAEVRESFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP G   ++GKA
Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L ++FAT  G VRRN+LSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTNVMRNGKIAMK 684

Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +  ++   +++   C++++DI+L T  G+ +RFP + +RVF  RNSVGVRGI L + D+
Sbjct: 685 FEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGEDDE 744

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H+    ++R  Y+K     RR ++G T+E  S   D+  + N S E   E+ 
Sbjct: 745 VVSMSVIRHSKYTPEQRSAYLK----MRRAMAGLTDEDAS-DEDAVEDPNFSTELFAEMS 799

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++  G GK +SS+D+ +  R G G+ A D  K    GALVA FPV  +DQI+
Sbjct: 800 AAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGALVASFPVELDDQIM 857

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           L + KG  IRVPV+ I   SR+  GV IF+T K E VVSV  I ++   D+ E+ E
Sbjct: 858 LATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNG--DDEETVE 911


>gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131]
 gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a))
           [Rhodobacter sphaeroides KD131]
          Length = 920

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/901 (53%), Positives = 637/901 (70%), Gaps = 11/901 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K 
Sbjct: 20  GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKS 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE R
Sbjct: 80  ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 139

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 140 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 199

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  +
Sbjct: 200 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 259

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIEL
Sbjct: 260 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT 
Sbjct: 320 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLIHFLTFREDVVARRTA 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I LI
Sbjct: 380 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 439

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL SR
Sbjct: 440 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 499

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL+
Sbjct: 500 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 559

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A+
Sbjct: 560 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 619

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GKI
Sbjct: 620 GKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 679

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL     +++V  C +++D+++ T LG+ +RFP + +RVF+GR+S GVRGI LA GD+
Sbjct: 680 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRVFSGRDSTGVRGIRLASGDR 739

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           V+SM+++ H +AD  ER  Y+K    QRRL++G T E     + D+   G +S  R  E+
Sbjct: 740 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 795

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ+
Sbjct: 796 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 853

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    ++ V++AE  
Sbjct: 854 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTADGVEDAEPG 913

Query: 910 E 910
           E
Sbjct: 914 E 914


>gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides
           2.4.1]
          Length = 907

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/901 (53%), Positives = 636/901 (70%), Gaps = 11/901 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K 
Sbjct: 7   GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  +
Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIEL
Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT 
Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I LI
Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL SR
Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 486

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL+
Sbjct: 487 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A+
Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GKI
Sbjct: 607 GKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD+
Sbjct: 667 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGDR 726

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           V+SM+++ H +AD  ER  Y+K    QRRL++G T E     + D+   G +S  R  E+
Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    +E V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029]
          Length = 907

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/901 (53%), Positives = 636/901 (70%), Gaps = 11/901 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K 
Sbjct: 7   GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  +
Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIEL
Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT 
Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I LI
Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL SR
Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 486

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL+
Sbjct: 487 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A+
Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GKI
Sbjct: 607 GKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD+
Sbjct: 667 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGDR 726

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           V+SM+++ H +AD  ER  Y+K    QRRL++G T E     + D+   G +S  R  E+
Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    +E V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
 gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
          Length = 906

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/897 (53%), Positives = 641/897 (71%), Gaps = 13/897 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 1   MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 61  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+IDNPD+  + L++ + GPDFPTGA++LGR+G + AY  GRGS++IR  + +E+
Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRAKTRVEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNKA+M+EKIAE  REKRI  IA ++DESDR G RVV+ELKR A
Sbjct: 241 IRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL G L AF+AFREEVV RRT Y L 
Sbjct: 301 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRGFLTAFIAFREEVVARRTAYDLR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM+R W A DI + I LIDD +
Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPT 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L IL+SR R++
Sbjct: 421 HRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIM 480

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  V+D+   PRRT I +   DM+DED I RE+MVVTV+  GY+KR  L+ +RA
Sbjct: 481 EIIADELREVRDQFAVPRRTEITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTALADFRA 540

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G  YK K WRLP G   A+GKA+
Sbjct: 541 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTAKGKAI 600

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  +  IMP    E  WN+L +VFAT  G VRRN+LSDF  +  +GKIAMK 
Sbjct: 601 VNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNVKSNGKIAMKF 660

Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +    +++   C++E+D++L T  G+ +RFP + +RVF  RNSVGVRGI L+  D+V
Sbjct: 661 EDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKV 720

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKNDSSVEGNISEERCQEL 793
           +SM+++ H +A  +ER+ Y+K    QRRL++G TE+   +  +++++V G +S ER  E+
Sbjct: 721 VSMSVIRHFEASSEERVAYLK----QRRLMAGLTEDEAASDDEDETAVAGQLSPERYAEM 776

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ KG GK +SS+D+ +  R G G+ A   S  N  G ++A FPV   DQ+
Sbjct: 777 SAVENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSN--GPIIACFPVEMPDQV 834

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAES 908
           +L + KG  IR+PV+ I   SR+  GV +F+T K+E VVSV  I  R  E  DEA++
Sbjct: 835 MLATSKGQSIRIPVDGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEAQT 891


>gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025]
          Length = 904

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/897 (53%), Positives = 637/897 (71%), Gaps = 9/897 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K 
Sbjct: 7   GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R   
Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKV 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIEL
Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT 
Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I LI
Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL SR
Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 486

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ II  EL  VK     PRRT I E   D+EDED I REDMVVT++  GY+KR PL+
Sbjct: 487 ERIMAIISDELREVKALFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A+
Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++NIL +  G  I  +M   E E+ W+ L VVFAT  G+VRRN+LSDF  + R+GKI
Sbjct: 607 GKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL     +++V  C + +D+++ T +G+ +RF  + +RVF+GR+S GVRGI LA+GD+
Sbjct: 667 AMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDSTGVRGIRLAEGDR 726

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GNISEERCQEL 793
           V+SM+++ H +AD  ER  Y+K    QRRL++G TEE  S +++ ++E G +S  R  E+
Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAESDEDEDAIEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+  T   K    G LVA FP+  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGV--TSFEKSMRGGPLVACFPIEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +L +  G  IRVPV +I   SR+  GV +F T  +E VVSV RI ++   D AE  E
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGGNEEVVSVARIADAG--DTAEVIE 895


>gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 719

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/677 (69%), Positives = 562/677 (83%), Gaps = 1/677 (0%)

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+
Sbjct: 1   GPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMI 60

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NM
Sbjct: 61  EKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNM 120

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           VALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+
Sbjct: 121 VALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVI 180

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  D T  LSE Q RAILELR
Sbjct: 181 RVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILELR 240

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           LARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE  TPRRT IV
Sbjct: 241 LARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIV 300

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           +G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF
Sbjct: 301 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLF 360

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+
Sbjct: 361 VVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEA 420

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTT 700
           +W+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL+   DEILSVETCT+ +D+LLTT
Sbjct: 421 NWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTERDDVLLTT 480

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+  ER  Y+K  + 
Sbjct: 481 ALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAT 540

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +RR    D E+I  +  + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS
Sbjct: 541 ERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRIS 600

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV
Sbjct: 601 GRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGV 660

Query: 881 VIFSTAKDERVVSVERI 897
            IFSTAKDE+VVSVERI
Sbjct: 661 TIFSTAKDEKVVSVERI 677


>gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
 gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
          Length = 905

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/886 (52%), Positives = 628/886 (70%), Gaps = 16/886 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   NK Y K A+  
Sbjct: 23  ISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHENGYTHNKSYRKSAKSV 82

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 83  GDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDNAAAMRYTEARLDKP 142

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           + +LL D+ K+TV+F+ NYDG   EP VL ARYPN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 143 SEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGEV 202

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+IDNP++    LME +  PDFPTGAVILGR+G   AY  GRGS++IR  + +E+
Sbjct: 203 IDATLALIDNPELTSSDLMEYVPAPDFPTGAVILGRSGAVKAYNEGRGSVIIRAKTRVEE 262

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R  I++ EIPYQVNKA+M+EKIAEL R+K+I  I+ ++DESDR G RVV+ELKR A
Sbjct: 263 IRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGISHVQDESDRVGVRVVVELKRDA 322

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T LQ+ F  NM+ALNG KPE+ TL   L  F++FREEVV RRT + LN
Sbjct: 323 TAEVVLNQLFRFTPLQTSFGCNMLALNGGKPEQLTLYKFLSYFISFREEVVARRTAFELN 382

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DE+V  IR S +P  AR +LM R W A+DI   I LIDD S
Sbjct: 383 KARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREKLMTRRWPAADISQYISLIDDPS 442

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +T+  D +  LSE Q RAILELRL RLT +G  ++ +EL  L  +I+  L+IL SR R++
Sbjct: 443 HTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDELEELAGKIQNYLEILRSRDRIM 502

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  V ++   PRRT I+E   DM+DED I +EDMVVT+++ GY+KR  L+ +R 
Sbjct: 503 SIISDELKEVHEKFAVPRRTEIIEWAGDMDDEDLIEKEDMVVTITNSGYIKRTNLAEFRE 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG  G+  +DEDFVT++F+ +THT++LFF++ G VYK K WRLP+G   A+GKA+
Sbjct: 563 QKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDGMVYKLKTWRLPLGGRNAKGKAI 622

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL ++ G  I  +MP    +  W NL +VFAT  G VRRN LSDF  +  +GKIAMKL
Sbjct: 623 VNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATDAGGVRRNALSDFTNVKSNGKIAMKL 682

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
                I++V   T+ +D LLTT LG+ +RFP + +RVF GR+S GVRGI LA GD+V+SM
Sbjct: 683 PEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDVRVFKGRDSTGVRGIKLAPGDKVVSM 742

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A++ H +A  DER  Y K     RR          +L  D +   +IS+ER  EL   E 
Sbjct: 743 AVIRHVNASSDERTAYFK----MRR----------ALSEDETPNNDISQERYNELSELED 788

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +IL ++  GFGKR+S++++R+S R G+G+ A ++ + ++   +VA F V++ DQI+L + 
Sbjct: 789 WILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRDD--TVVAAFTVHEEDQIMLATS 846

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            G  IR PV+ I +  R++ GV +F+T   E+VVSV  I ++E  D
Sbjct: 847 TGQSIRCPVSGISLQGRSSSGVTVFNTKDGEKVVSVAYIADTEDSD 892


>gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45]
 gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45]
          Length = 915

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/891 (53%), Positives = 630/891 (70%), Gaps = 10/891 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G   +K Y KCA   
Sbjct: 27  ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKSYRKCATAV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL++ 
Sbjct: 87  GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+D+ KDTVDF PNY     EPVVL ARYPNVLVNG  GIAVGMAT IP HNLGEV
Sbjct: 147 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I+ PD+  + L+E I  PDFPTG VILGR+G + AY  GRGS++IR  + IE+
Sbjct: 207 IDATLALIEQPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGRGSVIIRAKTRIEE 266

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNKA M+E+IAE VR+K+I  IA ++DESDR G RVV+ELKR A
Sbjct: 267 IKRDRYAIVIDEIPYQVNKATMIERIAECVRDKKIEGIAHVQDESDRSGVRVVVELKRDA 326

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q  F  NM+ALNG +PE+ TL   L AF+ FRE+VV RRT YLL 
Sbjct: 327 TAEVVLNQLFRFTPMQVSFGCNMLALNGGRPEQLTLRAFLTAFLDFREDVVARRTAYLLR 386

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AVAN+DEVV  IR S +   AR +LM R W A +I   I LIDD +
Sbjct: 387 KARERSHILCGLAVAVANVDEVVATIRASADAAEARDKLMTRRWPAHEIAPYIQLIDDPT 446

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 447 HKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAKKIKEYLEILGSRERIM 506

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  E+++VK++   PRRT I +   DM+DED I REDMVVTV+  GY+KR PL+ +RA
Sbjct: 507 EIITNEMIAVKEQFAVPRRTEIADWAGDMDDEDLIEREDMVVTVTAGGYIKRTPLAEFRA 566

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG  ++++D VT LF+ +THT +LFF++ G  YK K WRLP G   ++GKA+
Sbjct: 567 QKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFFTTEGMAYKLKCWRLPQGGRTSKGKAI 626

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL + QG  +  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK 
Sbjct: 627 VNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMKF 686

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  DE   +++   C++++DI+L T  G+ +RFP+  +RVF  RNS GVRG+ L  GD+V
Sbjct: 687 EGEDENTRLINARICSEDDDIMLVTDSGRAIRFPVPDVRVFNSRNSTGVRGVRLLNGDEV 746

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDSSVEGNISEERCQELK 794
           +SM+++ H +A+ DER  Y+K     RR ++G  ++  TS + + + +  +S+ER  E+ 
Sbjct: 747 VSMSVIRHFEAESDERASYLK----MRRAMAGLADDAETSDEEEGNADSRLSQERYAEMT 802

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++ KG GK +SS+D+ I  R G G+ A + S     G +VA FPV   DQI+
Sbjct: 803 AAENLILTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRG--GEIVASFPVEKGDQIM 860

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           L +  G  IRVPV+ I   SR   GV +F+T   E VVSV  I +    DE
Sbjct: 861 LATSTGQSIRVPVDGISFRSRGAGGVRVFNTRAGETVVSVAWIADQGDEDE 911


>gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 889

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/884 (53%), Positives = 626/884 (70%), Gaps = 10/884 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SITDEM+NSYL YA++VI+ RAIPDLRDGLKPVHRRILF M ++G   +K Y K AR  
Sbjct: 1   MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 61  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A ++L D+ KDTVDF+ NYDG  +EP VL  R+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+IDNPD+ ++ L++ + GPDFPTG V+LGR+G + AY  GRGS +IR  +H+E+
Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLLGRSGARKAYTEGRGSCIIRAKTHVEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNK+AM+EKIAE VREK+I  I+ ++DESDR G RVV+ELKR A
Sbjct: 241 LRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LNQL+R+T +Q+ F  NM+ALNG +PE  TL G L  F++FREEVV RRT YLL 
Sbjct: 301 TPDVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLYGFLSNFISFREEVVARRTAYLLR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM R W A +I   I LIDD +
Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDDPT 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 421 HRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 480

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  VK+    PRRT IV+   DMEDED I R +MVVT++  GY+KR PL  YRA
Sbjct: 481 QIISDELREVKELFAVPRRTEIVDWSGDMEDEDLIERAEMVVTITQSGYIKRTPLEDYRA 540

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  +D+D VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA+
Sbjct: 541 QKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKAI 600

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP   DE  W +L +VFAT  G VRRN LSDF  +  +GKIAMK 
Sbjct: 601 VNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNVKSNGKIAMKF 660

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +E   +++   C  E+D++L T+ G+ +RF    +RVF  R+SVGVRG+ L + D+V
Sbjct: 661 EGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVRGVRLNEKDEV 720

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            SM ++    A+ DER  Y+K     RR ++GD E+ T  + + + +  + ++R  E+  
Sbjct: 721 ASMFVLPTFPAESDERASYLK----MRRAMAGDVEQTTD-EEEGNADMPLPQDRYAEMSA 775

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G G  +SS+D+ +  R G G+ A +  K    G ++A FPV  +DQ++L
Sbjct: 776 AETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWE--KTMRTGEIIAAFPVEMDDQVML 833

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + KG  IRVPV+ I   SR+  GV +F+T K E VVSV RI E
Sbjct: 834 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGETVVSVARIAE 877


>gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37]
 gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37]
          Length = 911

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/883 (54%), Positives = 638/883 (72%), Gaps = 10/883 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K A+ 
Sbjct: 22  SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL K
Sbjct: 82  VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A  LL D+ KDTVDF+ NYDG  +EP VL AR+PNVLVNG  GIAVGMAT IP HNLGE
Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A++DNPD+  + LME ++GPDFPTG ++LGR+G + AY  GRGS++IR  + +E
Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAATTVE 261

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV++ IPYQVNKA M+E+IAE  R+K+I  IA ++DESDR G RVV+ELKR 
Sbjct: 262 EIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKRD 321

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR+T +Q+ F  NM+ALNG KPE+ TL G L AF+ FRE+V+ RRT YLL
Sbjct: 322 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGKPEQLTLRGFLSAFLDFREDVIARRTAYLL 381

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR+ LM+R W A DI   I LIDD 
Sbjct: 382 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALIDDP 441

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++    DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IK+ L+ILSSR R+
Sbjct: 442 THKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRERI 501

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII++E+ ++++E   PRRT IV+   DM+DED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 502 MGIIREEMTAIREEFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTAGGYIKRTALADFR 561

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA
Sbjct: 562 AQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKA 621

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 622 IVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 681

Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +  DE   +++   C++E+D++L T  G+ +RFP+  +RVF  RNS GVRGI L  GD+
Sbjct: 682 FEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGVRGIRLKNGDE 741

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H +A+ DER  Y+K     RRL++G TE+  S   D + +  + +ER  E+ 
Sbjct: 742 VVSMSVIRHFEAESDERASYLK----MRRLMAGVTEDEGS-DEDGNADAPLEQERYAEMS 796

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G +VA FPV   DQI+
Sbjct: 797 AAENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRG--GDIVASFPVEQGDQIM 854

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           L +  G  IRVPV+ I   SR+  GV +F+T  +E VVSV  I
Sbjct: 855 LATSTGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWI 897


>gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
 gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
          Length = 936

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/899 (53%), Positives = 640/899 (71%), Gaps = 23/899 (2%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I+ +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    + Y
Sbjct: 28  ENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVPGRPY 87

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I G+VMG YHPHG+++IYDALAR+AQDW++R+ LI+GQGNFGS+D DPPA+ RYT
Sbjct: 88  RKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPASMRYT 147

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LLDDL KDTV+F PNYDGS  EP VL AR+PN+LVNG GGIAVGMATNIP
Sbjct: 148 EARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMATNIP 207

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+  C A +DNP I +D LM I+ GPDFPTGA+ILG++G + AY TGRGSI++R
Sbjct: 208 PHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALILGQSGARQAYHTGRGSIIMR 267

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E++ GDR  IV+TEIPYQV K+ ++EKIAE  ++KRI  I+D+RDES+RQG R+V
Sbjct: 268 SRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQGVRIV 327

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           ++LKR A+ DV+LNQL+R+T  Q+ F  NM+A+ G +PE   L  I+++FV FREEV+ R
Sbjct: 328 MDLKRDATPDVVLNQLWRHTPAQTSFPANMLAIRGGRPETLNLRDIVESFVKFREEVITR 387

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+K+ LNKAR+RAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R W   +I+  I
Sbjct: 388 RSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEIESYI 447

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            L+ ++  TIG   T  LSEVQ RAIL+LRL RLT LGRD+I +EL  L   I E L+IL
Sbjct: 448 KLV-EAVDTIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAELLEIL 506

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +R RL  ++ +E  ++  E  TPRRT I     D++DED I REDMVVTV+H GY+KR 
Sbjct: 507 GNRVRLYQVMVEEFDAILVEFATPRRTEIAPAGDDIDDEDLIEREDMVVTVTHGGYIKRT 566

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  +RAQRRGGKGRSG+  +DED VT+LF+ STHT VLFFS+ G VY++KVWRLP G+P
Sbjct: 567 PLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVWRLPEGAP 626

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QARG+ +IN+L L  GE+ITT++P PEDE SW+ L+VVFAT HGNVRRN +  F  +  +
Sbjct: 627 QARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDAFANVPTN 686

Query: 672 GKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK AM+   D+ D ++ V   T+++D+LL T+ G+ +RF  + +R F  R S GVRGI L
Sbjct: 687 GKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTSTGVRGILL 746

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VIS++I+   DA  DER  Y++    +                D+  +  +S ER
Sbjct: 747 KGDDEVISLSILKGFDASTDERDAYLRAAPWK----------------DNEADPTLSAER 790

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E +  E+FILTV   G+GKR+S+Y++R + R G+GI   ++  +   G +VA FP ++
Sbjct: 791 MAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGI--GNIDNLERNGPVVASFPAHN 848

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +Q++LV+D+  LIR+ V + R+  R + GV +F+ + +E VV   RI ES+  DEAE+
Sbjct: 849 GEQLMLVTDQAKLIRLSVGDTRVIGRNSAGVRLFNVSDNEHVVGAARIEESD--DEAEA 905


>gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
 gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
          Length = 889

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/877 (54%), Positives = 626/877 (71%), Gaps = 10/877 (1%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G    K Y K AR  G+VMG+
Sbjct: 1   MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A FLL 
Sbjct: 61  YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVD++ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D  +A
Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I++PD+  + L++ + GPDFPTG ++LGR+G + AY  GRGS+VIR  + +E+   DR 
Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRAKTRVEEIRKDRW 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV+ EIPYQVNKA+M+EKIAE VR+K+I  I+ ++DESDR G RVV+ELKR A+A+V++
Sbjct: 241 AIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVVM 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT YLL KAR+R+
Sbjct: 301 NQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERS 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD ++T   D
Sbjct: 361 HILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R+LGII  E
Sbjct: 421 GTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  V++    PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +RAQRRGGK
Sbjct: 481 LREVRELFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G+  A+GKA++NIL +
Sbjct: 541 GVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKAIVNILPI 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE- 683
             G  +  IMP   DE  W++L VVFAT  G VRRNKLSDF  +  +GKIAMK +   E 
Sbjct: 601 PTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKIAMKFEGEHEG 660

Query: 684 --ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             +++    + ++D++L T  G+ +RFP + +R+F  RNSVGVRGI L KGD ++SM+++
Sbjct: 661 TTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRLGKGDNLVSMSVI 720

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GNISEERCQELKLKEQFI 800
            H +A  +ER+ Y+K    QRRL++G T++ ++   +  V+ G +S ER  E+   E  I
Sbjct: 721 RHFEATSEERVAYLK----QRRLMAGLTDDDSTDDEEEQVQAGQLSTERYAEMSAAEDLI 776

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT++ KG GK +S++D+ +  R G G+ A   +K    G +VA FPV  +DQ++L + KG
Sbjct: 777 LTITAKGAGKVSSAHDYPVRGRGGMGVTAW--TKAMAHGPIVACFPVEMSDQVMLATSKG 834

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             IRVPV  I   SR+  GV +FST K+E VVSV  I
Sbjct: 835 QSIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWI 871


>gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 924

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/892 (53%), Positives = 630/892 (70%), Gaps = 8/892 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G    K Y K AR  
Sbjct: 26  VSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARAV 85

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 86  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE+
Sbjct: 146 SASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEI 205

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I NPD+  + L++ +  PDFPTG +ILGRTG + AY  GRGS+VIR  + +E+
Sbjct: 206 IDATLALITNPDLTSEELIQYVPAPDFPTGGIILGRTGARKAYIEGRGSVVIRAKTRVEE 265

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNKA+++EKIAE VR+KRI  I+ ++DESDR G RVV+ELKR A
Sbjct: 266 IRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKRDA 325

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FREEVV RRT + L 
Sbjct: 326 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFLDFREEVVARRTAFELR 385

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+HVL GLA+AV+N+DE+V  IR S +P  AR +LM R W A+DI + I LIDD +
Sbjct: 386 KARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALIDDPT 445

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L   I+E L+IL+SR R++
Sbjct: 446 HRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRERIM 505

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           GII  EL  VKD+   PRR+ I++   DMEDED I  EDMVVTV+  GY+KR PL+ +RA
Sbjct: 506 GIITDELQEVKDKFAVPRRSEIIDWSGDMEDEDLIESEDMVVTVTATGYIKRTPLADFRA 565

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  +++D VT+LF+ +THT +LFF++ G VYK K WRLP G   A+GKA+
Sbjct: 566 QKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLPQGGRTAKGKAI 625

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           INIL + QG  +  +MP   DE  W +L +VFAT  G+VRRN LSDF  + R+GKIAMKL
Sbjct: 626 INILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTNVMRNGKIAMKL 685

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               E+++   C++++D++L T  G+ +RF  + +RVF GR+S GVRGI LA+G  V+SM
Sbjct: 686 PEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGIRLAEGRSVVSM 745

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A++ H +A  ++R  Y+K     RR + G ++++    ++ +     + E+ +E++  E 
Sbjct: 746 AVIRHFEASAEDRAAYLK----MRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAED 801

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILT+S  G GK +SS+D+ +  R G+G+ A D  K    G LVA FPV   DQI+L + 
Sbjct: 802 LILTISNGGSGKLSSSHDYPVRGRGGQGVAAMD--KAMRGGPLVACFPVEIEDQIMLATS 859

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            G  IR P+  I   SR+  GV +F TAK E VVSV  I +    DEAE  E
Sbjct: 860 TGQSIRCPIKGISFRSRSAGGVKVFDTAKKETVVSVALIADQG--DEAEDAE 909


>gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222]
 gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222]
          Length = 913

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/892 (53%), Positives = 629/892 (70%), Gaps = 9/892 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I  EM++SYL YA++VI+ RAIPDLRDGLKPVHRR+LF M + G   +K Y K AR  
Sbjct: 29  IDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTHDKPYRKSARPV 88

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+A+IYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 89  GDTMGKYHPHGDASIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSPAAMRYTEVRMDKP 148

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           + +LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 149 SAYLLMDIDKDTVEFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 208

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+I++PD+  + L+EI+ GPDFPTG +ILGR+G + AY  GRGSI++R  + IE+
Sbjct: 209 VDATLALIEDPDLPTERLLEIVPGPDFPTGGIILGRSGARKAYLEGRGSIIVRAKTRIEE 268

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           T   R+ I++ EIP+QVNKA+++EKIAEL +EKRI  IA ++DESDR G RVVIELKR A
Sbjct: 269 TRAGRQAIILDEIPFQVNKASLIEKIAELAKEKRIEGIAHVQDESDRVGVRVVIELKRDA 328

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FREEVV RRT Y L 
Sbjct: 329 TAEVVLNQLFRFTPMQTSFGANMLALNGGRPEQLTLRDFLTHFLTFREEVVARRTAYELR 388

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+RAHVL GLA+AV+N+DEVV  IR S +   AR  LM R W A +I + + LIDD  
Sbjct: 389 KARERAHVLCGLAVAVSNVDEVVATIRSSADAAEARERLMTRRWPAHEIVEYLKLIDDPL 448

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE Q RAILELRL RLT LG  ++ +EL SL   I+E L IL+SR R++
Sbjct: 449 HPVNEDGTYNLSETQARAILELRLQRLTQLGVQEVTDELKSLAEAIREFLAILASRERIM 508

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           GII  EL  VK+    PRRT I +   D++DED I REDMVVT++  GY+KR  L+ +RA
Sbjct: 509 GIISDELREVKNLFAVPRRTEITDWAGDLDDEDLIEREDMVVTITSGGYIKRTALAEFRA 568

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG SG+  +++D VT LF+ +THT +LFF++ G VY+ K WRLP+G   A+GKA+
Sbjct: 569 QRRGGKGLSGMATKEDDVVTTLFVANTHTELLFFTTDGMVYRLKTWRLPLGGRTAKGKAI 628

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  +MP    +S W+   V+F+T  G+VRRN LSDF  + R+GKIAMKL
Sbjct: 629 VNILPIGSGVSIAALMPVDAPQSEWDGYQVIFSTSEGDVRRNALSDFANVMRNGKIAMKL 688

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               E++     T+ +D++L T  G+ +RF  + +RVF GR+S GVRGI LA GD+V+SM
Sbjct: 689 PEGVELIGARMATESDDVMLFTAAGRAIRFQTTDVRVFKGRDSTGVRGIRLASGDRVVSM 748

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS--VEGNISEERCQELKLK 796
           +I+ H +AD  ER  Y+K     RR + G  ++      D    VE  IS+ER  E+   
Sbjct: 749 SIIRHFEADAGERAAYLK----MRRAVEGALDDGAEADEDEDNVVEAAISQERYAEMSAA 804

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT++ +G GK +SS+D+ +  R G+G+ A D  K    G LVA FPV+ +DQI+L 
Sbjct: 805 EDLILTITARGAGKISSSHDYPVRGRGGQGVMAMD--KAMRGGPLVASFPVDRDDQIMLA 862

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +  G  IRVPV+ I   SR+  GV +F+TA  E VVSV RI E+   DEAE+
Sbjct: 863 TSTGQSIRVPVDGISFRSRSAGGVRVFNTAPGEEVVSVARIAENG-EDEAEA 913


>gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 907

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/898 (53%), Positives = 630/898 (70%), Gaps = 8/898 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K 
Sbjct: 7   GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HN
Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  +
Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIEL
Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT 
Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R+H+L GLA+AV+N+DEVV  IR   +P  AR  LM R   ++DI D I LI
Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRLI 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           DD S+TI  DGT  LSE+Q RAIL+LRL+ LT +G  ++ +EL  L  +I++ LDIL SR
Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGSR 486

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL+
Sbjct: 487 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A+
Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++NIL +  G  I  +M     E  W+ L VVFAT  G+VRRN+LSDF  + R+GKI
Sbjct: 607 GKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD+
Sbjct: 667 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGDR 726

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTE-EITSLKNDSSVEGNISEERCQEL 793
           V+SM+++ H +AD  ER  Y+K    QRRL++G T+      + D+   G +S  R  E+
Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTQEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAESTE 910
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI ++ E  D  E  E
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGETADGVEDAE 898


>gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
 gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
          Length = 899

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/888 (54%), Positives = 625/888 (70%), Gaps = 7/888 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ K+TV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+IDNPD++ + L++ I GPDFPTG ++LGR+G + AY  GRGS++IR  +  E
Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAKTRTE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I++ EIPYQVNKA M+E+IAE  R+KRI  IA ++DESDR G RVVIELKR 
Sbjct: 255 EIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELKRD 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR+T +Q+ F  NM+ALNG KPE+ TL   L  F+ FREEVV RRT Y L
Sbjct: 315 ATAEVVLNQLYRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFITFREEVVARRTAYDL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+RAHVL GLA+AV+N+DEVV  IR S +   AR++LM+R W A DI   I LIDD 
Sbjct: 375 RKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALIDDP 434

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           S+   +DGT  LSEVQ RAIL+LRL RLT LG  ++ +EL  L  +IKE L IL+SR R+
Sbjct: 435 SHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRERI 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 495 MQIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTALADFR 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  +DED VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA
Sbjct: 555 AQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLPLGGRTSKGKA 614

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    E  W +L +VFAT  G+VRRN LSDF  + R+GKIAM 
Sbjct: 615 IVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTNVMRNGKIAMD 674

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C  E+D++L T  G+ +RFP + +RVF GR S GVRGI L   D+V+S
Sbjct: 675 LPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGIRLLGDDRVVS 734

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M+++ H DA  D+R  Y+K     RR ++G  ++ TS  ++ + +  +S E+  E++  E
Sbjct: 735 MSVIRHFDASADDRAAYLK----MRRQLAGAEDDGTS-DDEGNADAALSAEQFAEMQAAE 789

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++ +G GK +SS+D+ +  R G G++A D  K    G +VA FPV   DQI+L +
Sbjct: 790 NLILTITARGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVASFPVTLEDQIMLAT 847

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            KG  IRVPV  I   SR+  GV +F+T   E VVSV  I E    DE
Sbjct: 848 SKGQSIRVPVMGISFRSRSAGGVKVFNTGAGEEVVSVAWIAEQAEEDE 895


>gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 909

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/880 (53%), Positives = 621/880 (70%), Gaps = 6/880 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 25  TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAAALLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I++PD+  + L+E I GPDFPTG V+LGR+G + AY  GRGS++IR  + +E
Sbjct: 205 VVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKA+M+EKIAE VREKRI  ++ ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVSHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT Y L
Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYDL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR +LM R W A++I+  + LIDD 
Sbjct: 385 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPAAEIESYLRLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +  DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IKE LDILSSR R+
Sbjct: 445 LSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKEYLDILSSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  VK+    PRRT+IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 505 MGIIADELREVKENFAVPRRTQIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA
Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    +  W NL +VFAT  G+VRRN LSDF  + R+GKIAM 
Sbjct: 625 IVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNALSDFTNVKRNGKIAMD 684

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C++++D++L T  G+ +RFP + +RVF GR S GVRGI L  GD+V+S
Sbjct: 685 LPEGVELVNARICSEDDDVMLVTNSGRAIRFPTTDVRVFKGRKSTGVRGIRLNDGDRVVS 744

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M+++ H+    ++R  Y+K     RR ++G T++      ++  + N S E   E+   E
Sbjct: 745 MSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEPSDEEAVADPNFSTELYAEMSAVE 800

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++  G GK +SS+D+ +  R G G+ A D  K    G LVA FPV  +DQI+L +
Sbjct: 801 NLILTITAGGSGKLSSSHDYPVRGRGGMGVMAMD--KAMRGGPLVASFPVEMDDQIMLAT 858

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            KG  IRVPV+ I   SR+  GV +F+T K E VVSV RI
Sbjct: 859 SKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVARI 898


>gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong]
 gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong]
          Length = 905

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/906 (51%), Positives = 654/906 (72%), Gaps = 8/906 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E +E  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G 
Sbjct: 1   MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK+Y K AR+ G+V+GKYHPHG  A+YD+L RMAQD+SLRL L++GQGNFGS+DGD  
Sbjct: 61  HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG  QEP VL A +PN+LVNG GGIAVG
Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD C A IDN +I +  LME+++GPDFPTG  I+G  GIK+AY TGR
Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG + IE  S  +  I++TEIP+ VNKA+++EKIAELV +KRI  I+ +RDES++
Sbjct: 241 GKIIVRGKTDIESDSL-KHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+   P+  TL  I+ AF  FR
Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+  LM R WN S
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ DL+ L+DD +  +  DG  +L+E QT++ILELRL RLT   R  + +ELN+L  EIK
Sbjct: 420 DVYDLVKLVDDRA-ILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL SR +LL  +K EL  +K++  T R T I     + + ED I  E++VVTV+  
Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTARLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPLS YRAQ+RGGKGR G  +++ED +T LFI +THTS+LFFS++G VY  KV++
Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+     Y++FATKHGN+RRN LSD
Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +GKIA++LD  D ++SV++C +EN +LL T+ G+ +RFP+  +RVF  R S GV
Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I LA  D VISM I+   +   + R  Y+    + R LI+ +     S+  D S + N
Sbjct: 719 KAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSI--DLS-KYN 775

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E+    +   E+FILTVSE G+GK +S+Y++R++ R GKG+   +VS  ++ G +V+V
Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVS--SKTGKVVSV 833

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            P   +++++L++  G LIR  +N +RI  R+T GV++F T+KDE+VVS++ I++++  D
Sbjct: 834 LPACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893

Query: 905 EAESTE 910
           +    E
Sbjct: 894 DCSDDE 899


>gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11]
 gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11]
          Length = 913

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/895 (54%), Positives = 638/895 (71%), Gaps = 9/895 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G   +K Y K AR 
Sbjct: 25  TVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I++PD+  + L+E I GPDFPTG V+LGR+G + AY  GRGS++IR  + +E
Sbjct: 205 VVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTKVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKAAM+EKIAE VREKRI  +A ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT Y L
Sbjct: 325 ATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLSSFIDFREDVVARRTAYDL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R W ASDI   I LIDD 
Sbjct: 385 RKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPASDIAPYIRLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L  +IKE L+ILSSR R+
Sbjct: 445 THTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           LGII  EL  V+D    PRRT IV+   DMEDED I REDMVVT++  GY+KR PL+ +R
Sbjct: 505 LGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G   ++GKA
Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    +  W  L V+FAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATSAGDVRRNRLSDFTNVRRNGKIAMK 684

Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L  D   ++++   C++++D++L T  G+ +RF  + +RVF  R S GVRGI L   D V
Sbjct: 685 LPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFRTTDVRVFNSRESTGVRGIRLNGDDHV 744

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H +A  +ER  Y+K     RR ++G  ++  S  ++  V G IS++R  E+  
Sbjct: 745 VSMSVIRHFEASPEERAAYLK----MRRAVAGIADDGES-DDEDVVAGAISQDRYAEMSA 799

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G GK +SS+D+ +  R G G+ A D  K    GA+VA FPV  +DQI+L
Sbjct: 800 AENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGAIVASFPVEMDDQIML 857

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            + KG  IRVP++ I   SR+  GV +F+T K E VVSV  I E    DEA+++E
Sbjct: 858 ATSKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAEQSDEDEADTSE 912


>gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
 gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
          Length = 914

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/883 (53%), Positives = 621/883 (70%), Gaps = 9/883 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I  E++ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+  +K Y K A+ 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITADKSYRKSAKS 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE RL K
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDGQGNFGSMDGDGAAAMRYTESRLDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +L DDL KDTVDF  NYDG  +EP VL ARYPN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 VAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+ID+PD+ ++ ++E I  PDFPTG +ILGRTG + AY  GRGS+++R  +++E
Sbjct: 205 VIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIILGRTGARKAYIEGRGSVIVRAKTNVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNKA M++KIAE  REK+I  IA ++DESDR G RVVIELKR 
Sbjct: 265 EIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKIEGIAHVQDESDRNGVRVVIELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ TL   L  F+ FRE+VV RRT + L
Sbjct: 325 ATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLRAFLAYFIDFREDVVARRTAFEL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+RAHVL GLA+AV N+DE+V  IR S +  TAR +LM R W A DI + I LIDD 
Sbjct: 385 RKARERAHVLCGLAVAVTNIDEIVATIRSSADATTAREKLMTRKWPAQDILEYIKLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +I+E L+IL SR R+
Sbjct: 445 THTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II+ EL  V+D    PRRT IV+   DMEDED I +EDMVVTV+  GY+KR  L+ +R
Sbjct: 505 MQIIRDELTEVRDLFAVPRRTEIVDWSGDMEDEDLIEKEDMVVTVTSGGYIKRTALADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG S +  ++ED VT LF+ +THT +LFF++ G VYK K WRLP+GS  A+GKA
Sbjct: 565 AQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGSRTAKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    E  W++L VVFAT  G VRRNKLSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684

Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +   +   +++    + ++D++L T  G+ +RFP + +RVF  R+SVGVRGI L   D+
Sbjct: 685 FEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPATDVRVFNSRSSVGVRGIKLQGDDK 744

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+I+ H  A+ +ER  Y+K     RR ++G  ++  +   + +V G IS+ER  E+ 
Sbjct: 745 VVSMSIIRHFKAEAEERAAYLK----MRRAMAGLADDAETDDEEEAVAGAISQERYAEMS 800

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++ +G GK +SS+D+ +  R G G+ A D  K    GALV  FPV  +DQI+
Sbjct: 801 AAENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAMD--KAMRGGALVTSFPVEISDQIM 858

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LV+  G  IRVP+  I   SR   GV +F T K E VVSV  I
Sbjct: 859 LVTSTGQSIRVPIEGISFRSRGAGGVKVFDTGKGETVVSVAWI 901


>gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
 gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
          Length = 918

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/883 (54%), Positives = 618/883 (69%), Gaps = 9/883 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+   K Y K A+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD  AA RYTE RL K
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+  DL K+TVDF  NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D C A+I+NPD+  + L+E I GPDFPTG ++LGR+G + AY  GRGS+++R  + +E
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLGRSGARKAYLEGRGSVIMRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EI YQVNK+ M+EKIAE VREK+I  IA ++DESDR G RVVIELKR 
Sbjct: 265 EIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V++NQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT YLL
Sbjct: 325 ATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYLL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV N+DEVV  IR S +   AR +LM R W A  I   I LIDD 
Sbjct: 385 RKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R+
Sbjct: 445 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  VKD+   PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +R
Sbjct: 505 MGIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP G   ++GKA
Sbjct: 565 SQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L VVFAT  G VRRNKLSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684

Query: 678 L--DSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
              D  D  L +    + ++D++L T  G+ +RFP + +RVF  R SVGVRGI L   D+
Sbjct: 685 FEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDDE 744

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+I+ H DA  +ER  Y+K     RR ++G  ++    ++++  + N S+ER  E+ 
Sbjct: 745 VVSMSIIRHFDASSEERTAYLK----MRRAMAGLADDAEGDEDEAPADPNFSQERYAEMS 800

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  +LT++EKG GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+
Sbjct: 801 AAENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAMD--KAMRGGDIVASFPVEMDDQIM 858

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           L + KG  IRVPV  I   SR+  GV +F T + E VVSV  I
Sbjct: 859 LATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEVVVSVAWI 901


>gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217]
 gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217]
          Length = 899

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/893 (54%), Positives = 628/893 (70%), Gaps = 9/893 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARA 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 135 PAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I+NPD++ + L++ I GPDFPTG ++LGR+G + AY  GRGS++IR  + +E
Sbjct: 195 VVDATLALIENPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAKTRVE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I++ EIPYQVNKA M+E+IAE  REKRI  I+ ++DESDR G RVVIELKR 
Sbjct: 255 EIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDESDRNGVRVVIELKRD 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ TL   L  F+ FREEVV RRT + L
Sbjct: 315 ATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFIVFREEVVARRTAFEL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            +AR+RAHVL GLA+AV+N+DEVV  IR S +   AR +LM+R W A +I   I LIDD 
Sbjct: 375 RRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWPAREILPYIALIDDP 434

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           S+    DGT  LSEVQ RAIL+LRL RLT LG  ++ +EL  L  +IKE L IL+SR R+
Sbjct: 435 SHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRERI 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  V+D    PRRT+IV+   DMEDED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 495 MQIISDELREVRDLFAVPRRTQIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTALADFR 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  +DED VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA
Sbjct: 555 AQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLPLGGRTSKGKA 614

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    E  W +L +VFAT  G+VRRN LSDF  + R+GKIAM 
Sbjct: 615 IVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTNVMRNGKIAMD 674

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C  E+D++L T  G+ +RFP + +RVF GR S GVRGI L   D+V+S
Sbjct: 675 LPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGIRLLGNDRVVS 734

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M+++ H DA  DER  Y+K    +R+L   D +     + ++  +  IS ER +E++L E
Sbjct: 735 MSVISHFDASADERAAYLK---MRRQLAGADEDAAADDEGNA--DAAISPERFEEMQLAE 789

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++ KG GK +SS+D+ +  R G G++A D  K    G +VA FPV   DQI+L +
Sbjct: 790 NLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVASFPVTLEDQIMLAT 847

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            KG  IRVPV  I   SR+  GV +F+T   E VVSV  I  +E  DE E+ E
Sbjct: 848 SKGQSIRVPVMGISFRSRSAGGVKVFNTGTGEEVVSVAWI--AEQADEDETAE 898


>gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1]
 gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1]
          Length = 919

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/904 (53%), Positives = 631/904 (69%), Gaps = 15/904 (1%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E    S+ I+ EM+ S+L YA++VI+ RAIPDLRDGLKPVHRRILF M + G    K
Sbjct: 17  ERPEYSGPSIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVHRRILFAMHETGNTHEK 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA R
Sbjct: 77  SYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMR 136

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A +LL+D+ KDTVDF+ NYDG  QEP VL AR+PN+LVNG GGIAVGMATN
Sbjct: 137 YTEVRMDAPAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPNMLVNGAGGIAVGMATN 196

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C A+I+ PD+  + L+E +  PDFPTG +ILGR+G + AY  GRGS++
Sbjct: 197 IPPHNLGEVIDACQALIEKPDLSSEELIEYVPAPDFPTGGIILGRSGAQKAYIEGRGSVI 256

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  +  E+   DR  IV+ EIPYQVNKA+M+E+IAELVR+K+I  I+ + DESDR G R
Sbjct: 257 IRAKTRTEEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKIDGISGVADESDRIGVR 316

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG KPE+ TL G L +F+ FREEVV
Sbjct: 317 VVVELKRDATPEVVLNQLFRFTQMQTSFGCNMLALNGGKPEQLTLRGFLTSFLDFREEVV 376

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAHVL GLA+AV+N+DEVV  IR S +   AR  LM R+W A +I  
Sbjct: 377 ARRTAFELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAARAALMTRAWPAEEILP 436

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I LIDD ++    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IK+ L 
Sbjct: 437 FIKLIDDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKDYLA 496

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+SR R+L II  EL  V+ +    RRT IVE   DM+DED I R DMVVT++  GY+K
Sbjct: 497 ILASRERILEIISNELAEVRAKFAVDRRTEIVEWSGDMDDEDLIERSDMVVTITQGGYIK 556

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PL+ +RAQ+RGGKG +G  M+D+D VT +F+ +THT +LFF++ G VYK K WRLP G
Sbjct: 557 RTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFTTGGMVYKLKTWRLPSG 616

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  +RGKA++NIL +  G  I  IMP   DE  W+ L VVF T  G VRRN LSDF  + 
Sbjct: 617 SRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVFCTDRGTVRRNALSDFANVM 676

Query: 670 RSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R+GKIAMK +   E   +++    + ++D++L TK G+ +RFP + +RVF  R S GVRG
Sbjct: 677 RNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIRFPATDVRVFNSRASTGVRG 736

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L K D+V+SM+I+ H DA+  ER  Y+K    QRRL++G TEE  + ++D   EG++S
Sbjct: 737 IKLGKDDEVVSMSIIRHFDAEASERAAYLK----QRRLMAGVTEEAETDEDDVP-EGDLS 791

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            ER  E+   E  ILT++  G GK +SS+D+ +  R G+G+ A D  K    G L+A FP
Sbjct: 792 PERYAEMSAAEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAID--KAMRGGTLIASFP 849

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESE 901
           V  +DQI+L +  G  IRVP++ I   SR+  GV +F+TAK E +VSV  I      +++
Sbjct: 850 VEMDDQIMLATSTGQSIRVPIDGISFRSRSAGGVKVFNTAKGEDIVSVAYIADQGDEDAD 909

Query: 902 IVDE 905
           ++DE
Sbjct: 910 VIDE 913


>gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
 gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 901

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/891 (52%), Positives = 625/891 (70%), Gaps = 21/891 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E G++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    +
Sbjct: 2   QPSEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ R
Sbjct: 62  PYKKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL+DL KDTVDF+PNYD S +EP VL AR+PN+LVNG GGIAVGMATN
Sbjct: 122 YTEARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D  +A+IDNP I L+ LM I+ GPDFPTGA++LG+ G ++AYATGRGSI+
Sbjct: 182 IPPHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMMLGQGGARSAYATGRGSIM 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+   DR+ IV+T IP+QV K+ ++EKIAE  R+KRI  +AD+RDES+R+G R
Sbjct: 242 MRSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+A+V+LNQL+R+T  QS F  NM+A+ G +PE   L  IL AF+ FREEV+
Sbjct: 302 VVIELKRDATAEVVLNQLWRHTPAQSSFPANMLAIRGGRPEMMGLKDILSAFIIFREEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KARDRAH+L+GL +AV+NLDEVVRIIR S +P  AR  L+ R W   DI  
Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I L++     +    T  LSEVQ +AIL+LRL RLT LGRD+I  EL  L  EI+E L 
Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+ R +L G++++EL++V+DE  TPRRT +      ++DED I RE+MVVTV+  GY+K
Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATPRRTLLAPAADGIDDEDLIEREEMVVTVTMDGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PL+ +RAQRRGGKGR+G+  +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G
Sbjct: 542 RTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRMKVWRLPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            P  RG+ +IN+L L QGE I+T++P PEDES W  L+V+FAT  G+VRRN +  F  + 
Sbjct: 602 GPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNSMDAFTNVP 661

Query: 670 RSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +GKIAMK +  DE   ++ V    + +D+LL T+ G+ +RF    +R F  RNS GVRG
Sbjct: 662 SNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRG 721

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + LA+GD+VIS++I+       DER  Y++                 +   D+  E  + 
Sbjct: 722 MRLAEGDEVISLSILHRVGTTGDEREAYLR----------------AAPWKDNENEPTLP 765

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            ER  EL  +EQFILTV   G+GK +S+Y++R + R G+GI  T++  I   G +VA FP
Sbjct: 766 AERMAELAAREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIARNGPVVASFP 823

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                Q++LV+D+  LIR+ ++ +RI  R + GV +F  A+ E VVS   I
Sbjct: 824 ATQAHQLMLVTDQAKLIRMGLDSLRIIGRGSAGVRLFDVAEGEHVVSAALI 874


>gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
 gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
          Length = 918

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/882 (53%), Positives = 629/882 (71%), Gaps = 10/882 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 26  ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKPYRKSARAV 85

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 86  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A ++L D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 205

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D C+ +I+NPD+  + L+E I GPDFPTG ++LGRTG + AY  GRGS++ R  +H E+
Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRTGARKAYLEGRGSVITRAKTHTEE 265

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I++TEIPYQVNK+ M+++IAE  R+K+I  I+ ++DESDR G RVVIELKR A
Sbjct: 266 IRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELKRDA 325

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE  TL   L +F+ FRE+VV+RRT + LN
Sbjct: 326 TAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFREDVVIRRTAFELN 385

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDRAHVL GLA+AV+N+DEVV  IR S +  +AR  LM R+W A++I   I LIDD +
Sbjct: 386 KARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAAEILPFILLIDDPT 445

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +   +DGT  LSE+Q RAILELRL RLT +G  ++ +EL  L  +IKE L IL+SR R++
Sbjct: 446 HPANADGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLAILASRERIM 505

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL   K     PRRT+IV+   DMEDED I  +DMVVTV+  GY+KR  L  +RA
Sbjct: 506 QIITDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTETGYIKRTALVDFRA 565

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP GS  ++GKA+
Sbjct: 566 QKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAI 625

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP   DE  W++L +VFAT  G VRRNKLSDF ++ R+GKIAMK 
Sbjct: 626 VNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNKLSDFTKVMRNGKIAMKF 685

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +E   +++   C+ ++D++L T  G+ +RF  + +RVF  R S+GVRGI L   D++
Sbjct: 686 EGENEGVQLINARICSDDDDVMLVTNSGRAIRFASTDVRVFNSRASLGVRGIRLKGDDKI 745

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H +A+ DER  Y+K     RR ++G  ++   ++++    GNI++ER  E+  
Sbjct: 746 VSMSVIRHFEAESDERAAYLK----MRRAMAGLADD-AEIEDEDVTAGNITQERYAEMSA 800

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L
Sbjct: 801 SENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVASFPVEMDDQIML 858

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + KG  IRVPV  I   SR+  GV +F+T K+E VVSV  I
Sbjct: 859 ATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYI 900


>gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601]
          Length = 905

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/910 (53%), Positives = 639/910 (70%), Gaps = 11/910 (1%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E    G  ++SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G 
Sbjct: 1   MSGPERPSYGGPAISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQ 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y KCA   G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPP
Sbjct: 61  TKSKPYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL++ A  LL+D+ KDTVDF PNY     EPVVL ARYPNVLVNG  GIAVG
Sbjct: 121 AAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT IP HNLGEV+D  +A+I+NPD+  + L+E I  PDFPTG VILGR+G + AY  GR
Sbjct: 181 MATRIPPHNLGEVIDATLALIENPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS++IR  + IE+   DR  IV+ EIPYQVNKA M+E+IAE VR+K+I  IA ++DESDR
Sbjct: 241 GSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELKR A+A+V+LNQLYR+T +Q  F  NM+ALNG KPE+ TL   L AF+ FR
Sbjct: 301 SGVRVVIELKRDATAEVVLNQLYRFTPMQVSFGCNMLALNGGKPEQLTLRTFLTAFLDFR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT YLL KAR+R+H+L GLA+AVAN+DEVV  IR S +   AR +LM R W A 
Sbjct: 361 EDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAH 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           +I   I LIDD ++ +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IK
Sbjct: 421 EIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIK 480

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L+IL SR R++ II  E+ +V+D+   PRRT IV+   DM+DED I REDMVVTV+  
Sbjct: 481 EYLEILGSRERIMEIISNEMTAVRDQFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTQS 540

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR PL+ YR+Q+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WR
Sbjct: 541 GYIKRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWR 600

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G   ++GKA++NIL + QG  +  IMP    E  W++L +VFAT  G+VRRN+LSDF
Sbjct: 601 LPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDF 660

Query: 666 IQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             + R+GKIAMK +  DE   +++   C++++D++L T  G+ +RFP+  +RVF  RNS 
Sbjct: 661 TNVMRNGKIAMKFEGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNST 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSS 780
           GVRG+ LA GD+V+SM+++ H +A+ DER  Y+K     RR ++G  D  E  S  ++ +
Sbjct: 721 GVRGVKLANGDEVVSMSVIRHFEAESDERASYLK----MRRAMAGLADDAEAASDDDEGN 776

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            +  +S ER  E+   E  +LT++ KG GK +SS+D+ I  R G G+ A + S     G 
Sbjct: 777 ADSLLSAERYAEMSAAENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRG--GE 834

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA FPV   DQI+L +  G  IRVPV  I   SR+  GV +F+T + E VVSV  I + 
Sbjct: 835 IVASFPVEMEDQIMLATSTGQSIRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQ 894

Query: 901 EIVDEAESTE 910
              DE E+ E
Sbjct: 895 GDEDEGEAGE 904


>gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
 gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
          Length = 905

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/907 (51%), Positives = 650/907 (71%), Gaps = 10/907 (1%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E +E  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G 
Sbjct: 1   MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK+Y K AR+ G+V+GKYHPHG  A+YD+L RMAQD+SLRL L++GQGNFGS+DGD  
Sbjct: 61  HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG  QEP VL A +PN+LVNG GGIAVG
Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD C A IDN DI +  LME+++GPDFPTG  I+G  GIK+AY TGR
Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG + IE  S  +  I++TEIP+ VNKA+++EKIAELV +K+I  I+ +RDES++
Sbjct: 241 GKIIVRGKTDIESDSL-KHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+   P+  TL  I+ AF  FR
Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+  LM R WN S
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNIS 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ DL+ L+DD +  +  DG  +L+E QT++ILELRL RLT   R  + +ELN+L  EIK
Sbjct: 420 DVYDLVKLVDDRA-ILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL SR +LL  +K EL  +K++  T R T I     + + ED I  E++VVTV+  
Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTTRLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPLS YRAQ+RGGKGR G  +++ED +T LFI +THTS+LFFS++G VY  KV++
Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+     Y++FATKHGN+RRN LSD
Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +GKIA++LD  D ++SV++C + N +LL T+ G+ +RFP+  +RVF  R S GV
Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK-NDSSVEG 783
           + I LA  D VISM I+   +   + R  Y+      R LI+ +     SL+ N    + 
Sbjct: 719 KAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIAKN----KSLQPNIDLSKY 774

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N++E+    +   E+FILTVSE G+GK +S+Y++R++ R GKGI   +VS   + G +V+
Sbjct: 775 NLTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSP--KTGKVVS 832

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V     +++++L++  G LIR  +N +RI  R+T GV++F T+KDE+VVS++ I++++  
Sbjct: 833 VLSACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYS 892

Query: 904 DEAESTE 910
           D+    E
Sbjct: 893 DDCSDDE 899


>gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3]
 gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 891

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/882 (53%), Positives = 628/882 (71%), Gaps = 7/882 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 4   TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARP 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 64  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A FLL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 124 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+ID+PD+  + L++ + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E
Sbjct: 184 VVDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I+V EIPYQVNKA M+EKIAE VREKRI  +A ++DESDR G RVV+ELKR 
Sbjct: 244 ELRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L  F+ FREEVV RRT + L
Sbjct: 304 ATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAHDL 363

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR +LM R W A+DI   + LIDD 
Sbjct: 364 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDDP 423

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +  DGT  L+EVQ RAIL+LRL RLT LG  ++ +EL  L  +IKE L+IL SR R+
Sbjct: 424 LSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRERI 483

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V+++   PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 484 MGIIADELREVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 543

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA
Sbjct: 544 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKA 603

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    +  W+ L +VFAT  G+VRRN LSDF  + R+GKIAMK
Sbjct: 604 IVNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMK 663

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C++E+D++L T  G+ +RFP + +RVF GR+S GVRGI L  GD+V+S
Sbjct: 664 LPEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVS 723

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN--ISEERCQELKL 795
           M+++ H +A+  ER  ++K     R ++  + E+  +  ++ +VEG   +++ER QE++ 
Sbjct: 724 MSVIRHFEAEPWERAEFIKRF---RTILGAEMEDDAAETDEDAVEGEGVLTDERYQEMQD 780

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  ILT++  G GK +SS+D+ +  R G+G++A  +S     G L A FPV  +DQI+L
Sbjct: 781 AQDLILTITVTGLGKLSSSHDYPVRGRGGQGVKA--ISAGPRGGTLAASFPVLMDDQIML 838

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +  G  IRVPV  I   SR+  GV +F+T+K E VVSV RI
Sbjct: 839 ATSGGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARI 880


>gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
 gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
          Length = 903

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/895 (54%), Positives = 636/895 (71%), Gaps = 10/895 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G   NK Y KC   
Sbjct: 12  SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL+K
Sbjct: 72  VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A  LL D+ KDTVDF PNY     EP VL ARYPN+LVNG  GIAVGMAT IP HNLGE
Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+IDNPD+  + L++ I  PDFPTG +ILGR+G + AY  GRGS+VIR  +  E
Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLILGRSGARKAYTEGRGSVVIRCKTRTE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNKA M+E+IAE  REKRI  IA ++DESDR G RVVIELKR 
Sbjct: 252 EIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQL+R+T +Q  F+ NM+ALNG KPE  TL G L AF+ FRE+VV +RT + L
Sbjct: 312 ATPEVVLNQLFRFTPMQVSFACNMLALNGGKPETLTLRGFLTAFLDFREDVVAKRTAFEL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM+R W A +I   I LIDD 
Sbjct: 372 NKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLIDDP 431

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++ +  DGT  LS+ Q RAIL+LRL RLT LG  ++ +EL +L  +I+E LDIL SR R+
Sbjct: 432 THKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSRERI 491

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L I+  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 492 LSIVSDELREVRERHAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTQGGYIKRTALADFR 551

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGGKG SG  +++ED VT LF+ +THT +LFF++ G VYK K WRLP+G   +RGKA
Sbjct: 552 SQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSRGKA 611

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 612 IVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFTNVMRNGKIAMK 671

Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L  D    +++   C++++D++L T  G+ +RFP++ +RVF+GR+S GVRGI L  GD+V
Sbjct: 672 LPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGVRGIRLQNGDKV 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SMA++ H +A  +ER+ Y+K     RR   G T+E  S   D    G +  +R  E+  
Sbjct: 732 VSMAVIRHFEASPEERVAYLK----MRRAQMGMTDETESDDEDQVEAGQLPLDRFAEMSA 787

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  +LT++ KG GK +SS+ + +  R G+G+ ATD  K    G +V+VFPV  +DQI+L
Sbjct: 788 AENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSATD--KAMRGGPIVSVFPVELDDQIML 845

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           V+++G  IRVPV+ I   SR+  GV +F+TAK E VVSV  I  +E  DE E  E
Sbjct: 846 VTNQGQSIRVPVDGISFRSRSAGGVRVFNTAKGEEVVSVAWI--AEQADEDEPGE 898


>gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 907

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/880 (54%), Positives = 625/880 (71%), Gaps = 7/880 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 25  TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKAYRKSARP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAASLLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+ID+PD+  + L+E + GPDFPTG V+LGR+G + AY  GRGS++IR  +  E
Sbjct: 205 VVDATLALIDDPDLTSEQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRTE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKA+M+EKIAE VREKRI  +A ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT Y L
Sbjct: 325 ATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYDL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R W AS+I+  + LIDD 
Sbjct: 385 RKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPASEIEGYLRLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +  DGT  L+EVQ RAIL+LRL RLT +G  ++ +EL  L  +IKE LDILSSR R+
Sbjct: 445 LSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL SV+++   PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 505 MSIIGDELRSVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP  S   +GKA
Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    +  W NL +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNVRRNGKIAMK 684

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C+++ D++L T  G+ +RF  + +RVF  R S GVRGI L  GD V+S
Sbjct: 685 LPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIKLTNGDHVVS 744

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M+++ H +AD DER  Y+K     RR ++G  ++      D +  G+IS+ER  ++   E
Sbjct: 745 MSVIRHFEADPDERAAYLK----MRRAVAGIADD-GETDEDEATPGSISQERYAQMSAAE 799

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++  G GK +SS+D+ +  R G G+ A D  +    G LVA FPV+ +DQI+L +
Sbjct: 800 NLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMD--RAMRGGELVASFPVDLDDQIMLAT 857

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            KG  IRVPV+ I   SR+  GV +F+T K E VVSV  I
Sbjct: 858 SKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVAWI 897


>gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
 gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
          Length = 916

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/892 (52%), Positives = 626/892 (70%), Gaps = 20/892 (2%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I+++SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    K Y
Sbjct: 9   EPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSAAESGFVAGKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGKYHPHG++AIYDALARMAQDWS+R+ LI+GQGNFGS+D DPPAA RYT
Sbjct: 69  RKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSMDPDPPAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A+ LLDDL KDTVDF+PNYDGS +EP VL A+YPN+LVNG GGIAVGMATNIP
Sbjct: 129 EARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAGGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+ C+A ++N  I ++ L EI+  PDFPTGA+ILGR+G ++AY TGRGSI++R
Sbjct: 189 PHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALILGRSGARSAYQTGRGSIIVR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE+  GDR  IV+TEIPYQ  K A++EKIAE  +EKRI  I+D+RDES+R+G R+V
Sbjct: 249 SRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIRDESNREGVRIV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKR A+ +V+LNQL+R+T  Q+ F  NM+A+ G +PE   L  I++AFV FRE+V+ R
Sbjct: 309 IDLKRDATPEVVLNQLWRHTPAQTSFPANMLAIRGGRPELLNLRDIIQAFVQFREQVITR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+K+ L KAR+RAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R W  ++I   I
Sbjct: 369 RSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAREWPIAEIAPYI 428

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            L+ ++  + G   T  LSE Q RAIL+LRL RLT LGRD+I +EL  L   I E L+IL
Sbjct: 429 RLV-EAVESEGFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGLADSITELLEIL 487

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++R +L  +++ EL++++D+  TPRR+ I      ++DED I REDMVVTV+  GY+KR 
Sbjct: 488 ANRVKLYEVMRGELVAIRDQFATPRRSEIAAAADGIDDEDLIEREDMVVTVTMQGYIKRT 547

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  +RAQ RGGKGRSG+  +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G P
Sbjct: 548 PLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSNHGKVYRYKVWRLPEGGP 607

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
             RG+ ++N+L L  GE I+T++P PEDE+ W  L+V+FAT  G VRRN +  F  +  +
Sbjct: 608 ATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAKGAVRRNSMDAFTNVPSN 667

Query: 672 GKIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GKIAM+ D  S D ++ V     E+D+LL T+ G+ +RF    +R F  R S GVRGI+L
Sbjct: 668 GKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQSRTSTGVRGIAL 727

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VIS++++       +ER  Y++                   K +   E  +S ER
Sbjct: 728 KGEDEVISLSVLHRVGTTQEEREAYLR---------------FAPWKGEKEGEPELSVER 772

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +EL+  EQFILTV   G+GK +S+Y++R + R G+GI  T++  I   G +VA FP + 
Sbjct: 773 YEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIARNGDVVASFPASK 830

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             Q++LV+D+  LIR+ +  +R+  R + G+ +F+ A  E VVS  RI E+E
Sbjct: 831 GHQLMLVTDQAKLIRMSLASLRVIGRGSAGLRLFNVAPGEHVVSAARIEETE 882



 Score = 37.7 bits (86), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 44/239 (18%)

Query: 525 LDMEDEDCIV------REDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577
            D E ED ++       ED V+  +  G   R      R  Q R   G  G+ ++ ED V
Sbjct: 674 FDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQSRTSTGVRGIALKGEDEV 733

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN---QGERITTIM 634
             L ++                        +G+ Q   +A +         +GE   ++ 
Sbjct: 734 ISLSVLHR----------------------VGTTQEEREAYLRFAPWKGEKEGEPELSVE 771

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD------EILSVE 688
            + E   S   +  V A  +G     KLS   +  R+G+    + + D      ++++  
Sbjct: 772 RYEELRESEQFILTVCANGYG-----KLSSAYEYRRTGRGGQGITNIDNIARNGDVVASF 826

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
             ++ + ++L T   + +R  ++++RV  GR S G+R  ++A G+ V+S A +   + D
Sbjct: 827 PASKGHQLMLVTDQAKLIRMSLASLRVI-GRGSAGLRLFNVAPGEHVVSAARIEETEED 884


>gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
 gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A
 gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
          Length = 906

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/885 (51%), Positives = 637/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +    +V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S NP  A++ELM RSW+A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 429 DKA-MLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+  +  ++RL     EE     N   +   ++ +   E+  
Sbjct: 728 ISMTVLKGISSTKEDRDAYLT-VPWEKRLEIAKGEEF----NLEELGVTLTADSILEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003]
 gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 913

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/895 (52%), Positives = 629/895 (70%), Gaps = 11/895 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI +EM+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G   +K Y K AR  
Sbjct: 25  VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 85  GDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKP 144

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 145 AAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 204

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I+NPD+  +ALM+ + GPDFPTGA I+GR G + AY  GRGS++IR  + IE+
Sbjct: 205 IDATLALIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEE 264

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I++ EIPYQVNKA M+EK+A+LVREK++  IA + DESDR G RVVIELKR A
Sbjct: 265 IRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDA 324

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +ADV+LNQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+AFREEVV RRT Y L 
Sbjct: 325 TADVVLNQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELR 384

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM+R W A +I + + LIDD  
Sbjct: 385 KARERSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPL 444

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSEVQ RAIL+LRL RLT +G  ++ +EL  L  +I++ L IL+SR R++
Sbjct: 445 HPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIM 504

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  V+     PRRT IV+   D++DED I REDMVVT++  GY+KR PL+ +RA
Sbjct: 505 AIIATELREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRA 564

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+    ++GKA+
Sbjct: 565 QRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAI 624

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL + QG  + ++MP  E E +W++  V FAT  G+VRRN LSDF ++ ++GK AM+L
Sbjct: 625 VNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMEL 684

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
                ++    C +E+DI+L T  G+ +RFP+  +R+F GR+S GVRG+ LA+GD+V+SM
Sbjct: 685 PEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSM 744

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS-----SVEGNISEERCQEL 793
           +++ H +A+  ER  ++K   A+   + G+TE+      D+       EG +S+ R  E+
Sbjct: 745 SVIRHFEAEPWERDAFVKRYRAE---LGGETEDEAETDRDAEDEAEGGEGVLSDARYAEM 801

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  ILT++ KG GK +SS+ + +  R G+G+ A + S     GALVA FPV   DQ+
Sbjct: 802 LAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRG--GALVASFPVEPTDQV 859

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +L +  G  IR PV  I   SRA  GV +F+T  +E VVSV R+ +    DEAE+
Sbjct: 860 MLATSTGQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADPGD-DEAEA 913


>gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
          Length = 901

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/882 (53%), Positives = 622/882 (70%), Gaps = 8/882 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 15  TVSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARP 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 135 PAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+I++PD+  + L+E I GPDFPTGA++LGR+G + AY  GRGS++IR  + +E
Sbjct: 195 VVDATLALIEDPDLTSEQLIEYIPGPDFPTGALMLGRSGARKAYLEGRGSVIIRAKTRVE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  +A ++DESDR G RVV+ELKR 
Sbjct: 255 EIRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT +LL
Sbjct: 315 ATPEVVLNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAHLL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV N+DE+V  IR S +   AR +LM R W A  I + I LIDD 
Sbjct: 375 RKARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDDP 434

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IK+ L+ILSSR R+
Sbjct: 435 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRERI 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V+D    PRRT IV+   DMEDED I REDMVVTV+  G++KR PL+ +R
Sbjct: 495 MGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGWIKRTPLADFR 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA
Sbjct: 555 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKA 614

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 615 IVNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNVRRNGKIAMK 674

Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L  D   ++++V  C++++D++L T  G+ +RF  + +RVF  R S GVRGI L   D V
Sbjct: 675 LPEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRGIRLTGEDSV 734

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H+    ++R  Y+K     RR ++G T++  +   D+  + N S E   E+  
Sbjct: 735 VSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEASDEDAPEDPNFSTELYAEMSA 790

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L
Sbjct: 791 AENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGEIVASFPVELDDQIML 848

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + KG  IRVPV+ I   SR+  GV +F+T K E VVSV  I
Sbjct: 849 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWI 890


>gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
 gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
          Length = 921

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/882 (52%), Positives = 624/882 (70%), Gaps = 10/882 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 26  ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKAYRKSARAV 85

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 86  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A ++L D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE 
Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEA 205

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D C+ +I+NPD+  + L+E I GPDFPTG ++LGR G + AY  GRGS++ R  +H E+
Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRAGARKAYLEGRGSVITRAKTHTEE 265

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I+++EIPYQVNK+ M+++IAE  R+K+I  I+ ++DESDR G RVVIELKR A
Sbjct: 266 IRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELKRDA 325

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE  TL   L +F+ FRE+VV+RRT + LN
Sbjct: 326 TAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFREDVVIRRTAFELN 385

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDRAHVL GLA+AV+N+DEVV  IR S +  +AR  LM R+W A +I   I LIDD +
Sbjct: 386 KARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAEEILPFILLIDDPT 445

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +    DGT  LSE+Q RAILELRL RLT +G  ++ +EL  L  +IKE L IL+SR R++
Sbjct: 446 HPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLAILASRERIM 505

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ EL   K     PRRT+IV+   DMEDED I  +DMVVTV+  GY+KR  L  +RA
Sbjct: 506 QIIRDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTETGYIKRTALVDFRA 565

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP GS  ++GKA+
Sbjct: 566 QKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAI 625

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP   DE  W++L +VFAT  G VRRN+LSDF  + R+GKIAMK 
Sbjct: 626 VNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDFTNVMRNGKIAMKF 685

Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +   ++++   C+ ++D++L T  G+ +RF  + +RVF  R S+GVRGI L   D++
Sbjct: 686 EGENAGVQLINARICSADDDVMLVTNSGRAIRFASTDVRVFNSRASLGVRGIKLKGDDKI 745

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H  A+ DER  Y+K     RR ++G  ++   ++++    GNI++ER  E+  
Sbjct: 746 VSMSVIRHFKAEADERAAYLK----MRRAMAGLADD-AEIEDEDVPAGNITQERYAEMSA 800

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L
Sbjct: 801 AENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVASFPVERDDQIML 858

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + KG  IRVPV  I   SR+  GV +F+T K+E VVSV  I
Sbjct: 859 ATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYI 900


>gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
 gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
          Length = 905

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/885 (51%), Positives = 633/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   N+ Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   +DN DI++  L+E+++GPDFPT  +ILG  GIK+AY TGRGSI IRG + 
Sbjct: 189 GEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIAIRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARD+AH+L+GL IAV+N+DE++RII+ + +P  A++ELM RSW+A +I  L+ L+D
Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +  +G    +E Q +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR 
Sbjct: 429 DKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRE 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LA+ D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAEDDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    A  +ER  Y+  +S ++RL     EE     N   +  +++ E   E+  
Sbjct: 728 ISMTVLKGIKATREERDAYLS-VSWEKRLEIAKGEEF----NSEELGVDLTAESILEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++RSG GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV +F     E+VVS   I ES
Sbjct: 841 ITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885


>gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 925

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/896 (52%), Positives = 629/896 (70%), Gaps = 22/896 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G      Y K A
Sbjct: 42  ISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKSA 101

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYTE RL
Sbjct: 102 KIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEARL 161

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 162 SPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNL 221

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI+IR   +
Sbjct: 222 GEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIRSRYN 281

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G RVVI+LK
Sbjct: 282 IEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVIDLK 341

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV+ RR+KY
Sbjct: 342 RDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITRRSKY 401

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+   I LI+
Sbjct: 402 DLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIKLIE 461

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            +       G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L++L +R 
Sbjct: 462 -AVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRNRE 520

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+KR PL  
Sbjct: 521 RLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRTPLDT 580

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP G+PQARG
Sbjct: 581 FRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAPQARG 640

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +  +GK A
Sbjct: 641 RPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSNGKFA 700

Query: 676 MKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           ++ D  D+  ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRGI+L  GD
Sbjct: 701 IRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGD 760

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VIS++ +   +   ++R  Y++                 + K D +    +  E+ +  
Sbjct: 761 EVISLSTLRGFETTVEDRDKYLRS---------------AAWKTDPA-PAELPPEKIKAF 804

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP +D DQ+
Sbjct: 805 EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHDGDQL 862

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI + +  DE E T
Sbjct: 863 MLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITD-DGDDEEEGT 917


>gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 925

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/896 (52%), Positives = 628/896 (70%), Gaps = 22/896 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G      Y K A
Sbjct: 42  ISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKSA 101

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYTE RL
Sbjct: 102 KIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEARL 161

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 162 SPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNL 221

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI+IR   +
Sbjct: 222 GEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIRSRYN 281

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G RVVI+LK
Sbjct: 282 IEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVIDLK 341

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV+ RR+KY
Sbjct: 342 RDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITRRSKY 401

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+   I LI 
Sbjct: 402 DLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIKLI- 460

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           ++       G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L++L +R 
Sbjct: 461 EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRNRE 520

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+KR PL  
Sbjct: 521 RLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRTPLDT 580

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP G+PQARG
Sbjct: 581 FRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAPQARG 640

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +  +GK A
Sbjct: 641 RPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSNGKFA 700

Query: 676 MKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           ++ +    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRGI+L  GD
Sbjct: 701 IRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGD 760

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VIS++ +   +   ++R  Y++                 + K D +    +  E+ +  
Sbjct: 761 EVISLSTLRGFETTVEDRDKYLRS---------------AAWKTDPA-PAELPPEKIKAF 804

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP +D DQ+
Sbjct: 805 EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHDGDQL 862

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI + +  DE E T
Sbjct: 863 MLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITD-DGDDEEEGT 917


>gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
 gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
          Length = 868

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/870 (53%), Positives = 620/870 (71%), Gaps = 15/870 (1%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AI
Sbjct: 1   MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF
Sbjct: 61  YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG  QEP VL AR+PN+LVNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  
Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           + L+E + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E+   DR  IVV EIPY
Sbjct: 181 EQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA+M+EKIAE VREKRI  ++ ++DESDR G RVV+ELKR A+ +V+LNQL+R++ +
Sbjct: 241 QVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSPM 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+A
Sbjct: 301 QTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           V+N+DEVV  IR S +   AR++LM R W ASDI   I LIDD ++ +  D T  LSE Q
Sbjct: 361 VSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSETQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            RAILELRL RLT +G  ++ +EL  L  +IKE LDILSSR R++ II  EL  V+++  
Sbjct: 421 ARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQFA 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++
Sbjct: 481 VPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKE 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           ED VT+LF+ +THT +LFF++ G VYK K WRLP      +GKA++NIL +  G  I  I
Sbjct: 541 EDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690
           MP    ++ W +L +VFAT  G VRRN+LSDF  +  +GKIAMK +   +  ++++   C
Sbjct: 601 MPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHAETKLINARIC 660

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++E+D++L T  G+ +RFP + +RVF  RNSVGVRGI L  G +V+SM++V H DA+  E
Sbjct: 661 SEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGAEVVSMSVVRHFDAEPWE 720

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R  ++K    +  L +  ++E TS +N    EG +SE+R QE+      ++T+++ G G 
Sbjct: 721 RSAFIKRFRGE--LGNDVSDEETSEEN----EGALSEDRYQEMLAANDLLVTINKAGAGN 774

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            TS++D+R+S R G+G+ A       + G +VA FPV   DQI+L + KG  IRVPV+ I
Sbjct: 775 LTSAHDYRVSGRGGQGVGAM------KGGEIVATFPVTLEDQIMLATSKGQSIRVPVDGI 828

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900
              SR+  GV +F+T K E VVSV  I E+
Sbjct: 829 SFRSRSAGGVRVFNTGKGEEVVSVAWIAEN 858


>gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193]
 gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193]
          Length = 915

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/893 (52%), Positives = 631/893 (70%), Gaps = 14/893 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 25  TVSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+L+D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I++PD+  + L++ + GPDFPTGA++LGR+G + AY  GRGS++IR  + +E
Sbjct: 205 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRSKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV E+PYQVNKAAM+EKIAE VREK+I  +A ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT YLL
Sbjct: 325 ATPEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV N+DE+V  IR S +   AR +LM R W A  I   I LIDD 
Sbjct: 385 RKARERSHILCGLAVAVTNIDEIVATIRQSADAAEAREKLMTRRWPAQPILQYIALIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IKE L+ILSSR R+
Sbjct: 445 THTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V+D+   PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +R
Sbjct: 505 MGIICDELREVRDQFAVPRRTEIVDWSGDMDDEDLIEREDMVVTVTSGGYIKRTPLVDFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP  S   +GKA
Sbjct: 565 AQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    +  W +L +VFAT  G VRRN+LSDF  +  +GKIAMK
Sbjct: 625 IVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMK 684

Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +   +  ++++   C++++D++L T  G+ +RFP + +RVF  RNSVGVRGI L++G +
Sbjct: 685 FEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPTTDVRVFNSRNSVGVRGIKLSEGAE 744

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKNDSSVEGNISEERCQE 792
           V+SM+++ H DA+  ER  ++K   ++   +  D  E    +   +   EG +SEER QE
Sbjct: 745 VVSMSVIRHFDAEPWERSAFIKRFRSE---LGSDVSEDDAVAEVAEEIEEGALSEERYQE 801

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      ++T+++ G G  TS++D+R+S R G+G+ A       + G +VA FPV   DQ
Sbjct: 802 MLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAM------KGGEIVATFPVELGDQ 855

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I+L + KG  IRVPV+ I   SR+  GV +F+T K E VVSV  I ES   DE
Sbjct: 856 IMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAESGEDDE 908


>gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
 gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A
 gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
          Length = 905

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/885 (51%), Positives = 632/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   N+ Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   +DN DI++  L+E+++GPDFPT  +ILG  GIK+AY TGRGSI IRG + 
Sbjct: 189 GEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIAIRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARD+AH+L+GL IAV+N+DE++RII+ + +P  A++ELM RSW+A +I  L+ L+D
Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +  +G    +E Q +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR 
Sbjct: 429 DKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRE 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LA+ D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAEDDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    A  +ER  Y+  +S ++RL     EE     N   +  +++ E   E+  
Sbjct: 728 ISMTVLKGIKATREERDAYLS-VSWEKRLEIAKGEEF----NSEELGVDLTAESILEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV +F     E+VVS   I ES
Sbjct: 841 ITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885


>gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 930

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/905 (51%), Positives = 628/905 (69%), Gaps = 12/905 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE     +      +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEIPDPPEPPAPSDMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  E++D  +A+I NPD+ LD L+ I+ GPDFPTG +ILG  GI++A
Sbjct: 181 GIAVGMATNIPTHNPAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIILGHAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGSI+IR  + IE+   DR  IV+TEIPYQVNKA + E+IAELVR K+I  I+D+R
Sbjct: 241 FETGRGSILIRARAEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+  +P    L  +L+A
Sbjct: 301 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDNGQPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FITFREDVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMAT 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W+A+D++ L+ LI D    + +DG +YL+E Q R ILELRL RLTGL R+ I+ EL+ +
Sbjct: 421 AWDAADVEPLLALIQDEGNVV-TDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L I++SR R + ++ +EL +++ EL TPR T I +   D  DE  I    MVV
Sbjct: 480 AARINELLTIIASRPRRMEVMCEELAAIRAELATPRMTEIAQYAGDQTDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D V   F   TH  VLFFSS G  Y+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L    G+ IT ++P P+DE+ W NL++VFAT  GNVRRN
Sbjct: 600 EKVWRLPEASPTAKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 660 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL--- 775
           R+S GVRGI LA+GD+V S+ ++ H +A  +ER  +++  +A+RR  +   +        
Sbjct: 720 RDSSGVRGIRLAEGDEVNSLCVLNHVEATVEERASFLRMANARRRAENAALQAGEEAEEV 779

Query: 776 ----KNDSSVEGN--ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                +D ++  +  I  ER  E++  E+ +LTVS  GFG+R+S+YD+R+S R G+GI  
Sbjct: 780 AAEPSDDEALPADSVIDPERFAEMEQAEEILLTVSNAGFGRRSSAYDYRVSGRGGQGIAN 839

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +       +VA  PV +   ++LV+D G LIRVPV++IR+ SR   GV +F     E
Sbjct: 840 MTFNGGKRGSEVVATLPVINGTDVMLVTDAGRLIRVPVDQIRVMSRQASGVTLFRLDTTE 899

Query: 890 RVVSV 894
           RV SV
Sbjct: 900 RVTSV 904


>gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
 gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
          Length = 910

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/887 (52%), Positives = 633/887 (71%), Gaps = 5/887 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E   G   V+I  EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   +K 
Sbjct: 9   EGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+VMGKYHPHG+AAIYDA  RMAQ +S+R+ LI+GQGNFGSVDGDPPAA RY
Sbjct: 69  YRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  AA  LL D+ KDTVDF+P YD S  EP VL A +PN+LVNGG GIAVGMATNI
Sbjct: 129 TEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  E++D  + +I  P+  LD LM I+ GPDFPTG +ILGR+GI++A+ TGRG IV+
Sbjct: 189 PPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSAFETGRGGIVV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+   DR  I+V+E+PYQVNKA +LE+IAELVR K I  IADLRDESDR+G R+
Sbjct: 249 RARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRM 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P +  L   L  F+AFRE+V++
Sbjct: 309 VIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDCFIAFREDVIL 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+  +AR  LM R W A D++ L
Sbjct: 369 RRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++LIDD    I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL  +G  I E L+I
Sbjct: 429 LELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEVGRRIGELLEI 488

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++SR R L +++ ELL+V+  +  PR T I + + D +DE  I    MVVT++  G++KR
Sbjct: 489 IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVVTMTRDGFIKR 548

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL  +RAQ RGG+GR+   MR +D +T  F   TH  VLFFS  G  ++EKVWRLP  +
Sbjct: 549 TPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFREKVWRLPESA 608

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           P A+G+A++NIL    G+ +T ++P P+DES WN+L++VFAT  GNVRRN+L+DF  +  
Sbjct: 609 PAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRNRLADFRNVRS 668

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IAMKLD  D ++ V TC + +D+ L T+  +C+RF I+   +RVFAGR+S GVRGI 
Sbjct: 669 TGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAGRDSSGVRGIR 728

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNISE 787
           L  GD+VIS++++ H +A  DER  Y+K+ +AQRR   G+  E+ ++++D ++ +  ++ 
Sbjct: 729 LGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRR-AGGEEGELDAVESDEAAADIQLTP 787

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           ER   L+  E+ ILTV+  GFGK +S+Y++R++ R G+GI    ++  N   A+ A FPV
Sbjct: 788 ERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNG-RAVAASFPV 846

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              D I+LV+D+G LIR PV+++RI  R   GV +    KDE+V SV
Sbjct: 847 RPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSV 893


>gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 925

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/896 (52%), Positives = 629/896 (70%), Gaps = 22/896 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G      Y K A
Sbjct: 42  ISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKSA 101

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYTE RL
Sbjct: 102 KIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEARL 161

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 162 SPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNL 221

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI+IR   +
Sbjct: 222 GEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIRSRYN 281

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G RVVI+LK
Sbjct: 282 IEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVIDLK 341

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV+ RR+KY
Sbjct: 342 RDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITRRSKY 401

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+   I LI+
Sbjct: 402 DLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIKLIE 461

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            +       G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L++L +R 
Sbjct: 462 -AVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRNRE 520

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+KR PL  
Sbjct: 521 RLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRTPLDT 580

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP G+PQARG
Sbjct: 581 FRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAPQARG 640

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +  +GK A
Sbjct: 641 RPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSNGKFA 700

Query: 676 MKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           ++ +  D+  ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRGI+L  GD
Sbjct: 701 IRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGD 760

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VIS++ +   +   ++R  Y++                 + K D +    +  E+ +  
Sbjct: 761 EVISLSTLRGFETTVEDRDKYLRS---------------AAWKTDPA-PAELPPEKIKAF 804

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP +D DQ+
Sbjct: 805 EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHDGDQL 862

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI + +  DE E T
Sbjct: 863 MLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITD-DGDDEEEGT 917


>gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
 gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
          Length = 894

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/895 (51%), Positives = 639/895 (71%), Gaps = 18/895 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVEAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTVY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARD+AH+L+GL IAV+N+DE++RII+ S +P TA++E+M R WNA +I  L+ L+D
Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +A+LE+RL RLT + ++ +  +L +L  EI E L+IL SR 
Sbjct: 429 DKA-MLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILGSRE 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLKILKEELIKVKEEFATPRLTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LA  D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAGDDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLI----SGDTEEI-TSLKNDSSVEGNISEERC 790
           ISM ++    +  ++R  Y+     QR  I    S + EE+  SL  DS +E   SEE  
Sbjct: 728 ISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLDSILEMANSEE-- 785

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +
Sbjct: 786 --------FILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMD 835

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I ++   +E
Sbjct: 836 DELMLITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIADTSASEE 890


>gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
 gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
          Length = 907

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/883 (53%), Positives = 615/883 (69%), Gaps = 8/883 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI+ EM+ +YL YA++VI+ RAIPDLRDGLKPVHRR+LF M + G   +K Y K AR  
Sbjct: 25  VSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTSDKPYRKSARPV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+A+IYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 85  GDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLDGQGNFGSMDGDGAAAMRYTEVRMDKP 144

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG  GIAVGMAT IP HNLGEV
Sbjct: 145 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAEGIAVGMATRIPPHNLGEV 204

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG +A+I NPD+  +ALMEII  PDFPTGA ILGR+G + AY  GRGSI++R  + IE+
Sbjct: 205 IDGTLALIANPDLSTEALMEIIPAPDFPTGATILGRSGARKAYLEGRGSIIVRAKTRIEE 264

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I++ EIPYQVNKA M+E IAE VREK+I  IA ++DESDR G RVVIELKR A
Sbjct: 265 IRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKKIEGIAHVQDESDRIGVRVVIELKRDA 324

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +ADV+LNQLYR+T +Q  F+ NM+ALNG +PE+  L   L  F+ FREEVV RRT + L 
Sbjct: 325 TADVVLNQLYRFTPMQISFACNMLALNGGRPEQLALRDFLTHFITFREEVVARRTAFELR 384

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AVAN+DEVV  IR S +P  AR  LM R W A +I   I LIDD +
Sbjct: 385 KARERSHILCGLAVAVANVDEVVATIRSSADPAEARERLMTRRWPAGEIIPFIKLIDDPT 444

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE+Q RAIL+LRL RLT +G  +I +EL  L  +I++ L+IL SR R++
Sbjct: 445 HKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKEITDELLDLAGKIRDYLEILGSRDRIM 504

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  ++     PRRT IV+   DMEDED I REDMVVT++  GY+KR PL+ +R+
Sbjct: 505 AIISTELAEMRALFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLAEFRS 564

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGGKG + +  +++D VT LF+ +THT +LFF++ G VYK K WRLP+   QA+GKA+
Sbjct: 565 QNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLAGRQAKGKAI 624

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL + QG  I  +MP    E  W +L +VFAT  G+VR+N LSDF  + R+GKIAMKL
Sbjct: 625 VNILPIAQGVSIAALMPVDVPEEEWESLQIVFATSDGDVRQNDLSDFTNVMRNGKIAMKL 684

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
                +++     + +D++L T  G+ +RFP + IRVF  R S GVRGI L   D+V+SM
Sbjct: 685 PEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTEIRVFKSRGSTGVRGIRLGAEDRVVSM 744

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND--SSVEGNISEERCQELKLK 796
           AI+ H +AD  ER  Y+K    QRRL++G  ++ T    D  +   G +S ER  E+   
Sbjct: 745 AIIRHFEADPAEREAYLK----QRRLMAGAVDDETEADEDEVAVAAGQLSTERYAEMSAA 800

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT++  G GK TSS+D+ +  R G G++A D +     G LVA FPV  +DQI+L 
Sbjct: 801 EDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMDGAMRG--GPLVASFPVEMSDQIMLA 858

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +  G  IRVPV +I   SR+  GV +F+T  DE+VVSV R+ E
Sbjct: 859 TSTGQSIRVPVAQISFRSRSAGGVKVFNTGGDEQVVSVARVAE 901



 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  +E  ++T++  G+ KRT   +FR  NR GKG+ A+  +K +++  +  +F  N +
Sbjct: 536 EDLIEREDMVVTITSGGYIKRTPLAEFRSQNRGGKGL-ASMSTKEDDV--VTTLFVANTH 592

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            Q++  +  G + ++    + +A R  KG  I +     + VS+  +   ++ +E
Sbjct: 593 TQLLFFTTDGMVYKLKTWRLPLAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEE 647


>gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
 gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
          Length = 910

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/887 (52%), Positives = 633/887 (71%), Gaps = 5/887 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E   G   V+I  EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   +K 
Sbjct: 9   EGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+VMGKYHPHG+AAIYDA  RMAQ +S+R+ LI+GQGNFGSVDGDPPAA RY
Sbjct: 69  YRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  AA  LL D+ KDTVDF+P YD S  EP VL A +PN+LVNGG GIAVGMATNI
Sbjct: 129 TEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  E++D  + +I  P+  LD LM I+ GPDFPTG +ILGR+GI++A+ TGRG IV+
Sbjct: 189 PPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSAFETGRGGIVV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+   DR  I+V+E+PYQVNKA +LE+IAELVR K I  IADLRDESDR+G R+
Sbjct: 249 RARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRM 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P +  L   L  F+AFRE+V++
Sbjct: 309 VIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDCFIAFREDVIL 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+  +AR  LM R W A D++ L
Sbjct: 369 RRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++LIDD    I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL  +G  I E L+I
Sbjct: 429 LELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEVGRRIGELLEI 488

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++SR R L +++ ELL+V+  +  PR T I + + D +DE  I    MVVT++  G++KR
Sbjct: 489 IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVVTMTRDGFIKR 548

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL  +RAQ RGG+GR+   MR +D +T  F   TH  VLFFS  G  ++EKVWRLP  +
Sbjct: 549 TPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFREKVWRLPESA 608

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           P A+G+A++NIL    G+ +T ++P P+DES WN+L++VFAT  GNVRRN+L+DF  +  
Sbjct: 609 PAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRNRLADFRNVRS 668

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IAMKLD  D ++ V TC + +D+ L T+  +C+RF I+   +RVFAGR+S GVRGI 
Sbjct: 669 TGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAGRDSSGVRGIR 728

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNISE 787
           L  GD+VIS++++ H +A  DER  Y+K+ +AQRR   G+  E+ ++++D ++ +  ++ 
Sbjct: 729 LGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRR-AGGEEGELDAVESDEAAADIQLTP 787

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           ER   L+  E+ ILTV+  GFGK +S+Y++R++ R G+GI    ++  N   A+ A FPV
Sbjct: 788 ERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNG-RAVAASFPV 846

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              D I+LV+D+G LIR PV+++RI  R   GV +    KDE+V SV
Sbjct: 847 RPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSV 893


>gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
 gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
          Length = 908

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/881 (53%), Positives = 623/881 (70%), Gaps = 8/881 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I  E++ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+GM + G   +K Y K AR 
Sbjct: 25  SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYGMYEAGNTHDKSYRKSARS 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDRAAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A ++L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+IDNPD+  + ++E I  PDFPTG +ILGR+G + AY  GRGS+++R  + +E
Sbjct: 205 VIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLILGRSGARKAYLEGRGSVIVRAKTVVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNK+ M+++IAE  R+KRI  IA ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ TL   L AFV FREEV+ RRT + L
Sbjct: 325 ATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLRAFLVAFVDFREEVIARRTAFEL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+RAH+L GLA+AV N+DEVV  IR S +   AR  LM R W A+ I + I LIDD 
Sbjct: 385 RKARERAHILCGLAVAVTNIDEVVATIRGSADAADARHTLMTRRWPAAAILEYIKLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +I+E L+IL SR R+
Sbjct: 445 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRDRI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L II+ EL  V+D+   PRRT+IV+   DM+DED I +EDMVVTV+  GY+KR  L+ +R
Sbjct: 505 LQIIRDELTEVRDQFAVPRRTQIVDWSGDMDDEDLIEQEDMVVTVTSGGYIKRTALADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG S +  ++ED VT LF+ +THT +LFF++ G  YK K WRLP+GS  A+GKA
Sbjct: 565 AQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPLGSRTAKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL + QG  +  IMP    E+ W++L +VFAT  G+VRRN LSDF  +  +GKIAMK
Sbjct: 625 IVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATSAGDVRRNALSDFTNVKSNGKIAMK 684

Query: 678 L-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           L D    +++   C+ ++D++L T  G+ +RFP + +RVF GR+S GVRGI L   D+V+
Sbjct: 685 LPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTDVRVFKGRDSTGVRGIRLQGDDKVV 744

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM+I+ H +A+ +ER  Y+K     RR ++G  ++   ++++ +  G IS ER   +   
Sbjct: 745 SMSIIRHFEAEAEERAAYLK----MRRAMAGLADD-AEVEDEEAAPGQISPERYAAMSAA 799

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT+S KG GK +SS+D+ +  R G G+ A D  K    G LV  FPV  +DQI+LV
Sbjct: 800 ENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMD--KAMRGGPLVTSFPVEMSDQIMLV 857

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  G  IRVPV  I   SR+  GV +F T K E VVSV  I
Sbjct: 858 TSTGQSIRVPVEGISFRSRSAGGVKVFDTGKGETVVSVAWI 898


>gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 920

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/885 (53%), Positives = 617/885 (69%), Gaps = 12/885 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G    K Y K AR 
Sbjct: 25  SISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEAGNTHEKSYRKSARA 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A FLL D+ K+TVDF+ NYDG  +EP VL ARYPN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VV   +A+I+NPD+  + L+  + GPDFPTG ++LGR+G + AY  GRGS+VIR  + +E
Sbjct: 205 VVTATLALIENPDLTTEELIAYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRSKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNK+ M+EKIAE VREK+I  +A ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQL+R+TS+Q+ F  NM+ALNG +PE  TL   L +F+ FRE+VV RRT Y L
Sbjct: 325 ATPEVVLNQLFRFTSMQTYFGCNMLALNGGRPETLTLRRFLTSFIDFREDVVARRTAYEL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV N+DEVV  IR S +   AR +L  R W A +I + I+LIDD 
Sbjct: 385 RKARERSHILCGLAVAVTNVDEVVATIRSSADAAEAREKLKTRRWPAIEIAEYINLIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++ +  DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +I+E L+IL SR R+
Sbjct: 445 THKMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELKLLAGKIREYLEILGSRDRI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II+ EL  V+++   PRRT IV+   DMEDED I REDMVVT++  GY+KR PL  +R
Sbjct: 505 MAIIRDELSEVREKFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLIDFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG +G+  +DED +T LF+ +THT +LFF++ G  YK K WRLP+G   A+GKA
Sbjct: 565 AQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFTTDGMSYKLKTWRLPLGGRTAKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L VVFAT  G VRRNKLSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684

Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +   E   ++ V   + ++D++L T  G+ +RF  + +RVF  R S GVRGI L   D 
Sbjct: 685 FEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRATDVRVFNSRASTGVRGIKLQGKDT 744

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSSVEGNISEERCQE 792
           V+SM+++ H +A  DER  Y+K     RR ++G  D  E+   + +      I++ER  E
Sbjct: 745 VVSMSVIRHFEATSDERAAYLK----MRRAMAGLADDAELPD-EEEGDANSQITQERYAE 799

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  ILT++  G GK +SS+D+ +  R G G+ A D S     G +VA FPV  +DQ
Sbjct: 800 MSAIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRG--GEVVASFPVELDDQ 857

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           I+L + KG  IRVPV+ I   SR+  GV +F+T K+E VVSV  I
Sbjct: 858 IMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKNESVVSVAWI 902


>gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
 gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
          Length = 908

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/889 (52%), Positives = 610/889 (68%), Gaps = 25/889 (2%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    K Y K ARI 
Sbjct: 22  IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILWTSHENGFVSTKAYRKSARIV 81

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNFGS+D DPPA+ RYTE RL K 
Sbjct: 82  GDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNFGSMDPDPPASMRYTEARLAKV 141

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF+PNYDG+  EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 142 ADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEV 201

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D C+A +DNP + +D L++II GPDFPT  +ILG  G + AY  GRGSI++R    IE+
Sbjct: 202 IDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGTAGARKAYHEGRGSIIMRARHQIEE 261

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             GDR  IV+T IPYQV K+ ++EKIAE  ++KRI  I+D+RDES+R+G RVVI+LKR A
Sbjct: 262 GRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNREGVRVVIDLKRDA 321

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LNQL+R T  QS F  NM+A+ G +PE   L  I+++FV FREEV+ RRTK+ LN
Sbjct: 322 TPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEVLNLKDIIESFVRFREEVITRRTKFELN 381

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD---LIDLID 435
           KARDRAH+L+GL IAV NLDEVVRIIR SPNP  AR  L+ R W   +I     L++ I+
Sbjct: 382 KARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARETLLAREWPMGEIAPYIRLVEAIE 441

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D+   +    T  LSE+Q RAIL+LRL RLT LGRD+I +EL  L   I E L IL+ R 
Sbjct: 442 DAG--VAEAATYRLSEIQVRAILDLRLHRLTALGRDEIGDELEGLAKAIAEYLSILADRE 499

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L G+++QELL V+    TPR++ I      +EDED I REDMVVT++  GY+KR PLS 
Sbjct: 500 KLFGVMRQELLEVQHAFATPRKSEITAPADGIEDEDLIEREDMVVTITLDGYIKRTPLST 559

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGGKGRSG+  +DED V  +F+ STHT VLFFS+ G VY+ KVWRLP G P  RG
Sbjct: 560 FRAQNRGGKGRSGMATKDEDAVATMFVTSTHTPVLFFSTAGKVYRLKVWRLPEGGPTTRG 619

Query: 616 KALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           + ++N+L +L++ E I T++P PEDE+ W  L VVFAT  GNVRRN +  F  I  +GK 
Sbjct: 620 RPVVNMLPALDKDETIATVLPLPEDEAEWGKLSVVFATAKGNVRRNSMDAFANIPSNGKF 679

Query: 675 AMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           AMK   DS D ++ V      +D+LL T+ G+ +RF    +R F  R S GVRG++L   
Sbjct: 680 AMKFEEDSADRLIGVALLEASDDVLLATRSGKAIRFAGDEVREFTSRTSTGVRGMTLKGD 739

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS++I+       DER  Y++                   K +   E  +S ER  E
Sbjct: 740 DEVISLSILHRVGTTPDEREDYVR---------------FAPWKGEKEGEPALSAERYAE 784

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L+ +EQFILTV   G+GK +S+Y++R + R G+GI  T++  I   G +VA FP    DQ
Sbjct: 785 LQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIGRNGPVVASFPATQADQ 842

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LV+D+  LIR+P++ +R+  R + GV +F+ +  E VVS  R+ E E
Sbjct: 843 LMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVSGGEHVVSAVRLAEEE 891


>gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
          Length = 908

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/887 (54%), Positives = 635/887 (71%), Gaps = 19/887 (2%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G   +K Y K AR 
Sbjct: 15  TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 135 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + AY  GRGS+VIR  + +E
Sbjct: 195 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  ++ ++DESDR G RVV+ELKR 
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+V+ RRT Y L
Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTSFLDFREDVIARRTAYDL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R W A DI   I LIDD 
Sbjct: 375 RKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDDP 434

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L  +IKE L+ILSSR R+
Sbjct: 435 THTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           LGII  EL  V+D    PRRT IV+   DMEDED I REDMVVT++  GY+KR PL  +R
Sbjct: 495 LGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLVDFR 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G   ++GKA
Sbjct: 555 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 614

Query: 618 LINILSLNQGERITTIMP--FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           ++NIL +  G  I  IMP   P+DE  W NL VVFAT  G+VRRN+LSDF  + R+GKIA
Sbjct: 615 IVNILPIPPGVSIAAIMPVDVPDDE--WENLQVVFATSGGDVRRNRLSDFTNVRRNGKIA 672

Query: 676 MKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732
           MKL  D   ++++   C++++D++L T  G+ +RF  + +RVF  R S GVRGI L ++G
Sbjct: 673 MKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRGIRLVSEG 732

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM+++ H  A+  ER  ++K   ++   + G   E+   +N    EG++SEER QE
Sbjct: 733 DEVVSMSVIRHFSAEPWERNAFIKRFRSE---LGG---EVAEDENGEESEGSLSEERYQE 786

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      ++T++  G G  TS++D+R+S R G+G+ A       + GA+VA FPV   DQ
Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAM------KGGAIVATFPVELEDQ 840

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I+L + KG  IR PVN I   SR+  GV +F+TAK E VVSV  I E
Sbjct: 841 IMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAE 887



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVS 804
           Y++ +S++ R++   ++E+  ++++ +V          G++ +E   +L  +E  ++T++
Sbjct: 484 YLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDE---DLIEREDMVVTIT 540

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+ KRT   DFR   R GKG+      +  E   +  +F  N + Q++  +  G + +
Sbjct: 541 SGGYIKRTPLVDFRAQKRGGKGLSGM---QTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +    +    R +KG  I +       VS+  I   ++ D+
Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDD 638


>gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
 gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 908

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/887 (54%), Positives = 635/887 (71%), Gaps = 19/887 (2%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G   +K Y K AR 
Sbjct: 15  TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 135 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + AY  GRGS+VIR  + +E
Sbjct: 195 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVVIRAKTRVE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  ++ ++DESDR G RVV+ELKR 
Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+V+ RRT Y L
Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTSFLDFREDVIARRTAYDL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R W A DI   I LIDD 
Sbjct: 375 RKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDDP 434

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L  +IKE L+ILSSR R+
Sbjct: 435 THTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           LGII  EL  V+D    PRRT IV+   DMEDED I REDMVVT++  GY+KR PL  +R
Sbjct: 495 LGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLVDFR 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G   ++GKA
Sbjct: 555 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 614

Query: 618 LINILSLNQGERITTIMP--FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           ++NIL +  G  I  IMP   P+DE  W NL VVFAT  G+VRRN+LSDF  + R+GKIA
Sbjct: 615 IVNILPIPPGVSIAAIMPVDVPDDE--WENLQVVFATSGGDVRRNRLSDFTNVRRNGKIA 672

Query: 676 MKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732
           MKL  D   ++++   C++++D++L T  G+ +RF  + +RVF  R S GVRGI L ++G
Sbjct: 673 MKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRGIRLVSEG 732

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM+++ H  A+  ER  ++K   ++   + G   E+   +N    EG++SEER QE
Sbjct: 733 DEVVSMSVIRHFSAEPWERNAFIKRFRSE---LGG---EVAEDENGEESEGSLSEERYQE 786

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      ++T++  G G  TS++D+R+S R G+G+ A       + GA+VA FPV   DQ
Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAM------KGGAIVATFPVELEDQ 840

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I+L + KG  IR PVN I   SR+  GV +F+TAK E VVSV  I E
Sbjct: 841 IMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAE 887



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVS 804
           Y++ +S++ R++   ++E+  ++++ +V          G++ +E   +L  +E  ++T++
Sbjct: 484 YLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDE---DLIEREDMVVTIT 540

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+ KRT   DFR   R GKG+      +  E   +  +F  N + Q++  +  G + +
Sbjct: 541 SGGYIKRTPLVDFRAQKRGGKGLSGM---QTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +    +    R +KG  I +       VS+  I   ++ D+
Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDD 638


>gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
 gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
          Length = 905

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/885 (51%), Positives = 634/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   NK Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A+ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+IRG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIIRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIA++V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE VV  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVVTNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++  +GKIA
Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+  +  ++RL     EE     N   +  +++     E+  
Sbjct: 728 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEEF----NPEELGVSLTAPAIVEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  IRI  R T GV++F     E+VVSV  I E+
Sbjct: 841 ITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
 gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
          Length = 896

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/905 (51%), Positives = 625/905 (69%), Gaps = 27/905 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  + +D  +   I+ +SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETVLADPSD---ISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +N+ Y K AR+ GEVMGKYHPHG+++IYDALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  QESGFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K A  LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A IDNP I  D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    +E+  GDR  IV+T IPYQV K+ ++EKIAE  ++KR+  I+D+R
Sbjct: 238 YNTGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   L  I++A
Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEILGLRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEV+ RRTKY LNKARDRAH+L+GL +AV NLDEVV+IIR S +P  AR  L+ +
Sbjct: 358 FIKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAK 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            W   +I   + L++     I  DG  Y LS++Q RAIL+LRL RLT LGRD+I  EL  
Sbjct: 418 EWPIGEIAPYLRLVEAIENDI--DGDSYRLSDIQVRAILDLRLHRLTALGRDEIGKELAE 475

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E L IL+ R +L  ++++EL +++ E  TPR + I      +EDED I REDMV
Sbjct: 476 LAEAITEYLAILADRVKLYAVMREELEAIEREFATPRLSEITAAADGIEDEDLIEREDMV 535

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY
Sbjct: 536 VTVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVY 595

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KVWRLP G P  RG+ ++N+L L  GE I+T++P PEDE  W  L+V+FAT  G+VRR
Sbjct: 596 RLKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAMGSVRR 655

Query: 660 NKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           N +  F  +  +GKIAMK +  DE   ++ V    + +D+LL T+ G+ +RF    +R F
Sbjct: 656 NSMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAEDVREF 715

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             RNS GVRG+ LA GD VIS++++  + AD ++R  Y++    +              +
Sbjct: 716 QSRNSTGVRGMKLADGDAVISLSVLHRSGADGEQREEYLRFAPWKP-------------E 762

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D  ++      R QE    EQFILTV   G+GK +S+Y++R + R G+GI  T++  I 
Sbjct: 763 KDGEMQDQAMFARMQE---NEQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIG 817

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA FP    DQ++LV+D+  LIR+ ++ +R+  R + GV +F+ A +E VVS  +
Sbjct: 818 RNGPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVIGRNSAGVRLFNVADNEHVVSAAK 877

Query: 897 IRESE 901
           I ESE
Sbjct: 878 IEESE 882



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 32/197 (16%)

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q R   G  G+ + D D V  L       SVL  S      +E+  R     P+  G+  
Sbjct: 716 QSRNSTGVRGMKLADGDAVISL-------SVLHRSGADGEQREEYLRFAPWKPEKDGEMQ 768

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              +             F   + +   +  V A  +G     KLS   +  R+G+    +
Sbjct: 769 DQAM-------------FARMQENEQFILTVCANGYG-----KLSSAYEYRRTGRGGQGI 810

Query: 679 DSRDEI------LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + D I      ++    T+ + ++L T   + +R  + ++RV  GRNS GVR  ++A  
Sbjct: 811 TNIDNIGRNGPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVI-GRNSAGVRLFNVADN 869

Query: 733 DQVISMAIVLHADADYD 749
           + V+S A +  ++A+ D
Sbjct: 870 EHVVSAAKIEESEAEAD 886


>gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003]
          Length = 883

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/889 (52%), Positives = 624/889 (70%), Gaps = 11/889 (1%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G   +K Y K AR  G+VMGK
Sbjct: 1   MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K A FLL 
Sbjct: 61  YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D  +A
Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD+  +ALM+ + GPDFPTGA I+GR G + AY  GRGS++IR  + IE+   DR 
Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEEIRKDRF 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++ EIPYQVNKA M+EK+A+LVREK++  IA + DESDR G RVVIELKR A+ADV+L
Sbjct: 241 AIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+AFREEVV RRT Y L KAR+R+
Sbjct: 301 NQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARERS 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GLA+AV+N+DEVV  IR S +P  AR  LM+R W A +I + + LIDD  + +  D
Sbjct: 361 HILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSEVQ RAIL+LRL RLT +G  ++ +EL  L  +I++ L IL+SR R++ II  E
Sbjct: 421 GTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  V+     PRRT IV+   D++DED I REDMVVT++  GY+KR PL+ +RAQRRGGK
Sbjct: 481 LREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+    ++GKA++NIL +
Sbjct: 541 GLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAIVNILPI 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QG  + ++MP  E E +W++  V FAT  G+VRRN LSDF ++ ++GK AM+L     +
Sbjct: 601 PQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMELPEGVTL 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +    C +E+DI+L T  G+ +RFP+  +R+F GR+S GVRG+ LA+GD+V+SM+++ H 
Sbjct: 661 VDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSMSVIRHF 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDS-----SVEGNISEERCQELKLKEQF 799
           +A+  ER  ++K   A+   + G+TE+      D+       EG +S+ R  E+   +  
Sbjct: 721 EAEPWERDAFVKRYRAE---LGGETEDEAETDRDAEDEAEGGEGVLSDARYAEMLAAQDL 777

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT++ KG GK +SS+ + +  R G+G+ A + S     GALVA FPV   DQ++L +  
Sbjct: 778 ILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRG--GALVASFPVEPTDQVMLATST 835

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           G  IR PV  I   SRA  GV +F+T  +E VVSV R+ +    DEAE+
Sbjct: 836 GQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADPGD-DEAEA 883


>gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12]
          Length = 921

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/909 (51%), Positives = 633/909 (69%), Gaps = 20/909 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE        E   +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  ++K Y K AR  GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  EV+D  +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +ATGRG+++IR  + IE+   DR+ I+VTEIPYQVNKA + E+IA+LVR K+I  IAD+R
Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP    L  +L+A
Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            WNA+D++ L+ LI D    +  DG + L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 421 QWNAADVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I+ S  R + +++ EL   + E+ TPR T I +   D +DE  I    MVV
Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+G   R +D V   F   TH  V+FFSS G VY+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KVWRLP   P A+G+AL+N+L     + IT ++P P+DE  W  L++VFAT  GNVRRN
Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-------------I 765
           R S GVRGI LA+GD+VIS+A++ H +A  +ER  Y++  +A+RR              +
Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDADTV 779

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             D++E    +  S+ +  +S ER  +L+  E+ +L VS+ GFG+R+S+YD+R+S R G+
Sbjct: 780 QVDSDE----EEGSNTDALLSPERFAQLEEAEEILLIVSDGGFGRRSSAYDYRVSGRGGQ 835

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI     S       + A  PV +   ++LV+D G LIRVPV+++R+ +R   GV +F  
Sbjct: 836 GITNMTFSANKRGKEVAATLPVLEGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRL 895

Query: 886 AKDERVVSV 894
             DERV SV
Sbjct: 896 NDDERVTSV 904


>gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
 gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
          Length = 902

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/897 (51%), Positives = 644/897 (71%), Gaps = 7/897 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I++AF+ FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S +I  +I
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +LI DS+  +  DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L
Sbjct: 422 ELISDSASFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV
Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRV 540

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS YR QRRGGKG+ G  +++ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+  P
Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEP 600

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG+AL+NI  L +GE IT IMP P +     N  +VF T +GN+RRN L+DF  I  +
Sbjct: 601 TARGRALVNIFPLAEGETITNIMPLPSENDENQN--IVFTTAYGNIRRNSLADFHYIPSN 658

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+KLD  D+++SV+ C + + + L+T+ G+ +RF +S +R F  RNS GVRGI LAK
Sbjct: 659 GKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAK 718

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VISM I+       + +  Y+K +   +RL +     I S    +  +  I  E   
Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFL 777

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L + E+FILT++E GFGKRTS+Y++RI+NR G GI  T++   +  G +VA FPV   D
Sbjct: 778 KLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGI--TNILTTSRNGNVVASFPVEQGD 835

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I + +  +++ S
Sbjct: 836 NIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSIS 892


>gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 905

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/885 (51%), Positives = 634/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +   A++ELM R W A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++    +L +L  EI E L+IL SR+
Sbjct: 429 DKA-MLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I  E+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQHEEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L + E IT IMP PE++  WNNL ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK+G+ +RFP+ ++RV   R S GVRG+ LA+ D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVRGMKLAREDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+  +  ++RL     E      N   +   ++ +   E+  
Sbjct: 728 ISMTVLKGISSTKEDRDAYLT-VPWEKRLEIAKGEAF----NPEELGVALTADSILEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGK++S+Y +RI++R G GI   D++  ++ G +V V PV  +++++L
Sbjct: 783 FEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDNELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV++F   + E+VVSV  I ES
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAES 885


>gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114]
 gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114]
          Length = 905

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/884 (53%), Positives = 622/884 (70%), Gaps = 10/884 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K AR 
Sbjct: 12  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 72  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I+ PD+  + L++ + GPDFPTG ++LGR G + AY  GRGS++IR  + +E
Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRGGARKAYLEGRGSVIIRAKTRVE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I+V EIPYQVNKA M+EKIAE VREK+I  IA ++DESDR G RVVIELKR 
Sbjct: 252 EIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V++NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT YLL
Sbjct: 312 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAYLL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD 
Sbjct: 372 RKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALIDDP 431

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IKE L+IL SR R+
Sbjct: 432 THTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRDRI 491

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 492 MGIIADELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 551

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG SG  ++++D VT LF+ +THT +LFF++ G  YK K WRLP G+  ++GKA
Sbjct: 552 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGARTSKGKA 611

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL + QG  I  I+P   DE  W+ L +VFAT  G VRRN LSDF  +  +GKIAMK
Sbjct: 612 IVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 671

Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +   +   +++    + ++D++L T  G+ +RFP   +RVF  R+SVGVRG+ L+  D+
Sbjct: 672 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGVRGVKLSGHDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDSSVEGNISEERCQEL 793
           V+SM+++ H DA  DER  Y+K     RR + G T++  TS ++++S    IS +R  E+
Sbjct: 732 VVSMSVIRHFDATADERAAYLK----MRRAMVGLTDDSETSDEDETSANATISPDRYAEM 787

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++  G GK +SS+D+ +  R G G+ A D  K  + G +VA FPV  +DQI
Sbjct: 788 SAAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWD--KRMQTGQIVASFPVEMDDQI 845

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L + KG  IRVPV  I   SR+  GV +F+T K E VVSV  I
Sbjct: 846 MLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWI 889


>gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
 gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
          Length = 920

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/904 (51%), Positives = 636/904 (70%), Gaps = 11/904 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE        E   +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  ++K Y K AR  GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  EV+D  +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +ATGRG+++IR  + IE+   DR+ I+VTEIPYQVNKA + E+IA+LVR K+I  IAD+R
Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP    L  +L+A
Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W+A++++ L+ LI D    +  DG + L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 421 QWDAAEVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I+ S  R + +++ EL   + E+ TPR T I +   D +DE  I    MVV
Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIFTPRMTEIADYAGDQDDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+G   R +D V   F   TH  V+FFSS G VY+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KVWRLP   P A+G+AL+N+L     + IT ++P P+DE  W  L++VFAT  GNVRRN
Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR---LISGDTEEITSL 775
           R S GVRGI LA+GD+VIS+A++ H +A  +ER  Y++  +A+RR         E++ ++
Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDVDAV 779

Query: 776 KNDSSVEGN-----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           + DS  EG+     +S ER ++L++ E+ +L VS+ GFG+R+S+YD+R+S R G+GI   
Sbjct: 780 QPDSDEEGSDTDALLSPERFEQLEVAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNM 839

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S       + A  PV     ++LV+D G LIRVPV+++R+ +R   GV +F    DER
Sbjct: 840 TFSANKRGKEVAATLPVLAGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDER 899

Query: 891 VVSV 894
           V SV
Sbjct: 900 VTSV 903


>gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
 gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
          Length = 923

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/882 (52%), Positives = 619/882 (70%), Gaps = 9/882 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SITDEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 24  ISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYETGNSHDKSYRKSARPV 83

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+ AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 84  GDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A F+L D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 144 AAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 203

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+ID+PD+  + L+E + GPDFPTG ++LGR+G + AY  GRGS+++R  + +E+
Sbjct: 204 VDATLALIDDPDLSSEDLIEYVPGPDFPTGGIMLGRSGARKAYLEGRGSVIVRAKTRVEE 263

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I++ EIPYQVNKA M+EKIAE VREK+I  I+ ++DESDR G RVV+ELKR A
Sbjct: 264 IRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELKRDA 323

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L +FV FREEVV RRT + L 
Sbjct: 324 TAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFVDFREEVVARRTAFELR 383

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV N+DE+V  IR S +   AR +LM R W A  I + I+LIDD +
Sbjct: 384 KARERSHILCGLAVAVTNIDEIVATIRSSADAAEAREKLMTRRWPAESILEYIELIDDPT 443

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +I++ L+IL SR R++
Sbjct: 444 HTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIRDYLEILGSRERIM 503

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ EL  V+D+   PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL+ +RA
Sbjct: 504 QIIRDELHEVRDQFAVPRRTAIVDWSGDMDDEDLIEREDMVVTVTSGGYIKRTPLADFRA 563

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG  G+  ++ED VT LF+ +THT +LFF++ G  YK K WRLP GS  ++GKA+
Sbjct: 564 QRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGSRTSKGKAI 623

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  +  I+P   DE  W +L V FAT  G VRRN LSDF  +  +GKIAMK 
Sbjct: 624 VNILPMPVGASVAAILPIDRDEKDWADLQVTFATSAGTVRRNALSDFTNVKSNGKIAMKF 683

Query: 679 D---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +   +  ++++V     ++D++L T  G+ +RF  + +RVF  R S GVRGI L   D V
Sbjct: 684 EGEHAETKLINVRITAPDDDVMLVTNSGRAIRFRANDVRVFNSRASTGVRGIKLNGDDTV 743

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H +AD  ER  Y+K     RR ++G  ++     +D+   G +S+ER  E+  
Sbjct: 744 VSMSVIRHFEADPAERAAYLK----MRRAMAGLADDAEVDDDDAVEAGQLSQERYAEMSA 799

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++ +G GK +SS+D+ +  R G G+ A D  K    G +V  FPV+ +DQI+L
Sbjct: 800 AENLILTITAQGAGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVTSFPVDIHDQIML 857

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+++G  IRVPV  I   SR+  GV +F T K+E V+SV  I
Sbjct: 858 VTNQGQSIRVPVEGISFRSRSAGGVKVFDTGKNEMVMSVAWI 899


>gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
 gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
          Length = 910

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/903 (51%), Positives = 624/903 (69%), Gaps = 23/903 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +D  +   I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETALADPSD---ISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NK Y K ARI G+V+GKYHPHG++AIY ALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K  + LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A IDN  I +D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR  IV+T IPYQV K  ++EKIAE  ++KRI  I+D+R
Sbjct: 238 YHTGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   +  I++A
Sbjct: 298 DESSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   + L++     +G D +  LS+ Q RAIL+LRL RLT LGRD+I NEL  L
Sbjct: 418 DWPVAEIAPYLKLVEAIETEVGGD-SYRLSDTQVRAILDLRLHRLTALGRDEIGNELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL  R +L  ++++E  +++ +  TPR + I      ++DED I RE+MVV
Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIDDEDLIEREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L+ GE I T++P PEDE SW +L+V+FAT +G VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  I  +GKIAM+ D  S D ++ V   T+E+D+LL T+ G+ +RF  + +R F  
Sbjct: 657 SMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRG++L K D+VIS++I+  + A+ +ER  Y++                   K +
Sbjct: 717 RTSTGVRGMTLKKDDEVISLSILHRSGANQEERDDYLR---------------FAPWKAE 761

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +S ER  EL  KEQFILTV   G+GK +S+YD+R + R G+GI  T++  I   
Sbjct: 762 KEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGI--TNIDNIGRN 819

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP    D ++LV+D+  LIR+ +  +R+  R++ GV +F+ + DE VVS  +I 
Sbjct: 820 GPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 879

Query: 899 ESE 901
           ES+
Sbjct: 880 ESD 882


>gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 900

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/895 (51%), Positives = 642/895 (71%), Gaps = 7/895 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTV+FRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S +I  +I
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +LI DSS  +  DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L
Sbjct: 422 ELISDSSSFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV
Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRV 540

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS YR QRRGGKG+ G  +++ED +T+LF+ +THTS+LFFS++G VY+ KV++LP+  P
Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRLKVYKLPLAEP 600

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG+AL+NI  L+  E IT IMP P +     N  +VFAT +GN+RRN L+DF  I  +
Sbjct: 601 TARGRALVNIFPLSDSETITNIMPLPSENDENQN--IVFATAYGNIRRNSLADFHYIPSN 658

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K
Sbjct: 659 GKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVK 718

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VISM I+       + +  Y+K +   +RL +     I S    +  +  I  E   
Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFL 777

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L + E+FILT++E GFGKRTS+Y++R++NR G GI  T++   +  G +VA FPV   D
Sbjct: 778 KLAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGI--TNILTTSRNGNVVASFPVEQGD 835

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            I+L++DKG LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 836 NIMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 900

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/895 (51%), Positives = 642/895 (71%), Gaps = 7/895 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTV+FRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  ++NP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLKRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S +I  +I
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +LI DS+  +  DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L
Sbjct: 422 ELISDSASFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV
Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRV 540

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS YR QRRGGKG+ G  +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+  P
Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEP 600

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG+AL+NI  L+ GE IT IMP P +     N  +VFAT +GN+RRN L+DF  I  +
Sbjct: 601 TARGRALVNIFPLSDGETITNIMPLPSENDENQN--IVFATAYGNIRRNSLADFHYIPSN 658

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K
Sbjct: 659 GKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVK 718

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VISM I+       + +  Y+K +   +RL +     I S    +  +  I  E   
Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFL 777

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L + E+FILT++E GFGKRTS+Y++R++NR G GI  T++   +  G +VA FPV   D
Sbjct: 778 KLAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGI--TNILTTSRNGNVVASFPVEQGD 835

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            I+L++DKG LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 836 NIMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
 gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
          Length = 905

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/890 (51%), Positives = 634/890 (71%), Gaps = 18/890 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L+EGQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVNFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++  +GKIA
Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEI-TSLKNDSSVEGNISEERC 790
           ISM ++    +  ++R  Y+     QR  I+     ++EE+  SL   + VE   SEE  
Sbjct: 728 ISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNSEELGVSLTVPAIVEMANSEE-- 785

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +
Sbjct: 786 --------FILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMD 835

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 836 DELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
 gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
          Length = 905

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/885 (51%), Positives = 632/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++  +GKIA
Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFTKLQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+     QR  I+        + N   +  +++     E+  
Sbjct: 728 ISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EVFNPEELGVSLTAPAIVEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
 gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
          Length = 898

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/895 (50%), Positives = 638/895 (71%), Gaps = 10/895 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQ +SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARD+AH+L+GL IAV+N+DE++RII+ + +   A++ELM RSW A  I  L+ L+D
Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +     D   + +E+Q +AILE+RL RLT + ++ +  EL +L  EI E ++IL SR+
Sbjct: 429 DKAMLNEQDKCSF-TELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  SGKIA
Sbjct: 608 RPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSSGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++   ++  ++R  Y     A+R  I+   E      N   +   ++ +   ++  
Sbjct: 728 ISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEE-----FNLEELGVTLTADSILKMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKIDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+   + AE +E
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETS--ESAEDSE 893


>gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E]
 gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A
 gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii]
 gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
 gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22]
 gi|1093608|prf||2104274A DNA gyrase
          Length = 905

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/882 (51%), Positives = 634/882 (71%), Gaps = 8/882 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L++D+ K TV F  NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGKAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IA++N+DE++ II+ S +   A++ELM R W   DI  LI L+D
Sbjct: 369 LLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    +   GT+  +EVQ +AILE++L RLT + ++ +  +L  L  +I E L+IL+SR+
Sbjct: 429 D-KVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILASRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  +PR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFASPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NILSL + E IT IMP PE++  W++L ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++R+   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++   ++  ++R  Y+  +  ++RL     EE     N   +  N++ +   E+  
Sbjct: 728 ISMTVLKGINSTKEDRDAYLT-VPWEKRLEIAKGEEF----NLEELGVNLNADSILEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++ G LIR  +  +RI  R T GV++F    DE+VVSV  I
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882


>gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246]
 gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246]
          Length = 905

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/885 (51%), Positives = 633/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++  +GKIA
Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+  +  ++RL     E      N   +  +++     E+  
Sbjct: 728 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEAF----NPEELGVSLTAPAIVEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 930

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/884 (52%), Positives = 622/884 (70%), Gaps = 9/884 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 1   MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA
Sbjct: 61  GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           + FLLDD+ +DTVDF+PNYD S  EP VL A +PN+LVNG  GIAVGMATNIPTHN GEV
Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R  + IE+
Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR+ I++TEIPYQVNKA + EKIA+LVR K I  I+D+RDESDR G RVVIELKR A
Sbjct: 241 IRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LNQLYR+T LQ+ FS NM+AL+  KP    L  IL+AF+ FREEV++RR ++ LN
Sbjct: 301 TPDVVLNQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLN 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDR H+LVGL +AVAN+DEV+ +IR +P+  TAR  LM R W+AS++  L++LI D  
Sbjct: 361 KARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEG 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             I  DG + L+E Q R ILELRL RLTGL R+ I+ EL  +  +I E L I+ SR R +
Sbjct: 421 NVI-IDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRM 479

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++++ELL+ + E+ TPR T I + L D  DE  I    MVVT++  G++KR PL V+R+
Sbjct: 480 EVMREELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRS 539

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG+GR+    R +D +   F   TH  V+FFSS G  Y+ KVW LP  +P A+G+AL
Sbjct: 540 QNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRAL 599

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L     + IT ++P P+DE  W +L++ FAT  GNVRRN+LSDF  I  SG IAMKL
Sbjct: 600 VNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKL 659

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVI 736
           D  D ++ V TC +  D+ L TK  +C+RF I+   +RVFAGR S GVRGI L +GD VI
Sbjct: 660 DEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVI 719

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRL------ISGDTEEITSLKNDSSVEGNISEERC 790
           S+ I+ H DA  +ER  Y++  +A+RR        S + E ++  +    + G++++ER 
Sbjct: 720 SLCILNHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERF 779

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +EL+ +E+ +LTV++ GFG+R+S+YD+R+S R G+GI     S       +V   P  D 
Sbjct: 780 EELEQQEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDG 839

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++LV+D G LIR+PV+++R+ SR   GV +F     E V+ V
Sbjct: 840 TDVMLVTDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICV 883


>gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
 gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A
 gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
          Length = 905

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/885 (51%), Positives = 633/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    +R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +   A++ELM R W A +I  L+ L+D
Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++  +GKIA
Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+  +  ++RL     E      N   +  +++     E+  
Sbjct: 728 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEAF----NPEELGVSLTAPAIVEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/912 (51%), Positives = 631/912 (69%), Gaps = 29/912 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +D  +   I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETALADPSD---ISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NK Y K ARI G+V+GKYHPHG++AIYDALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K    LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A I+NP I +D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR+ IV+T IPYQV K  ++EKIAE  ++KRI  I+D+R
Sbjct: 238 YHTGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   +  I++A
Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   + L+ ++  T  S  T  LS+ Q RAIL+LRL RLT LGRD+I +EL  L
Sbjct: 418 DWPVAEIAPYLKLV-EAIETEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL  R +L  ++++E  +++ +  TPR + I      +EDED I RE+MVV
Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIEDEDLIEREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I T++P PEDE SW +L+V+FAT +G VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656

Query: 661 KLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  +  +GKIAM+   DS D ++ V   T+E+D+LL T+ G+ +RF  + +R F  
Sbjct: 657 SMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRG++L   D+VIS++I+  + AD D+R  Y++    +                 
Sbjct: 717 RTSTGVRGMTLKGDDEVISLSILHRSGADQDQREEYLRFAPWK----------------- 759

Query: 779 SSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              EG + ++    L K +EQFILTV   G+GK +S+Y++R + R G+GI  T++  I  
Sbjct: 760 PEKEGEMQDQDMFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIGR 817

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA FP    DQ++LV+D+  LIR+ ++ +R+  R++ GV +F+ + DE VVS  +I
Sbjct: 818 NGPVVASFPATQADQLMLVTDQAKLIRMGLDSLRVIGRSSAGVRLFNVSDDEHVVSAAKI 877

Query: 898 RESEIVDEAEST 909
            ES   DEAE T
Sbjct: 878 EES---DEAEDT 886


>gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
 gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
          Length = 908

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/887 (51%), Positives = 634/887 (71%), Gaps = 9/887 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 10  GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 70  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 190 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  S DI+++I+L
Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 429

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           + DS+  +  +G MY L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS
Sbjct: 430 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 487

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + S L+ I+KQ LL  K +L TPR T I + + +++ E  I +E+MVVTV+  G+VKRV 
Sbjct: 488 TDSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 547

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 548 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 607

Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  
Sbjct: 608 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 667

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+
Sbjct: 668 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 727

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+ 
Sbjct: 728 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 786

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILTV+E GFGKRTS+Y++RI++R G G+   ++      G +VA FPV+  
Sbjct: 787 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 844

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQ++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  +
Sbjct: 845 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 891


>gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
 gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
          Length = 934

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/901 (51%), Positives = 626/901 (69%), Gaps = 11/901 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 16  VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKSARAV 75

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL +A
Sbjct: 76  GDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLARA 135

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG  GIAVGMATNIP HN GE+
Sbjct: 136 ASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGASGIAVGMATNIPPHNPGEI 195

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I+ PD+ LD +++ + GPDFPTG  ILGR GI++A+ TGRGS++IR  + +E 
Sbjct: 196 IDATLAMIERPDMTLDDILQYVPGPDFPTGGTILGRAGIRSAFETGRGSVIIRARAEVED 255

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR+ I+VTEIPYQVNKA + E+IAELVR K++  I+D+RDESDR G R+VIE+KR A
Sbjct: 256 IRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIRDESDRSGMRIVIEIKRDA 315

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LNQLYR+T LQ+ F VNM+AL+G +P    L  +L+AF+ FREEV++RR ++ LN
Sbjct: 316 TPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLQAFIRFREEVILRRARFDLN 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDR H+LVGL IAVAN+D V+ +IR +P+  TAR  LM+R+W+A DI  L+ LI D  
Sbjct: 376 KARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMERAWDAGDIAPLLALIHDEG 435

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             +  D  ++L+E Q R ILELRL RLTGL RD I+ EL+ +   I E L+I++SR R +
Sbjct: 436 NVV-VDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEVATRINELLEIIASRPRRM 494

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +++ EL +V+ E+ TPR T I +   D  DE  I    MVVT++  G++KR PL V+RA
Sbjct: 495 EVMRNELATVRAEIATPRATDIADYAGDQTDESLIEPGQMVVTITRDGFIKRTPLDVFRA 554

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG+GR+    R +D +   F   TH  VLFFSS G  Y+EKVWRLP  SP A+G+AL
Sbjct: 555 QNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYREKVWRLPEASPTAKGRAL 614

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L     + IT ++P P+DE  W NL++VFAT  GNVRRN+LSDF  I  SG IAMKL
Sbjct: 615 VNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRNRLSDFRNIRSSGLIAMKL 674

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVI 736
           D  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAGR S GVRGI LA+GD+V 
Sbjct: 675 DDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAGRGSSGVRGIRLAEGDEVN 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISG--------DTEEITSLKNDSSVEGNISEE 788
           S+ ++ H DA  +ER  Y++  +A+RR  +          T +I S   +++ +  +  E
Sbjct: 735 SLCVLNHVDATVEERSAYLRIANARRRAENAAQNGEDTDTTPDIASDDEETATDLALPPE 794

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  E++  E+ +L VS  GFG+R+S+YD+R+S R G GI            A+VA  PV 
Sbjct: 795 RVMEMEGAEEILLIVSNAGFGRRSSAYDYRVSGRGGLGINNMSFPTARRGNAVVATLPVL 854

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
               ++LV+D G LIR+PV++IRI SR   GV +F     E V SV  + +    DE ++
Sbjct: 855 AGTDVMLVTDAGRLIRLPVDQIRIMSRQASGVTLFRLNDTEEVTSVFPVMDDGEDDETDA 914

Query: 909 T 909
           T
Sbjct: 915 T 915


>gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia]
          Length = 902

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/887 (51%), Positives = 634/887 (71%), Gaps = 9/887 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  S DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           + DS+  +  +G MY L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS
Sbjct: 424 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + S L+ I+KQ LL  K +L TPR T I + + +++ E  I +E+MVVTV+  G+VKRV 
Sbjct: 482 TDSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 601

Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  
Sbjct: 602 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 661

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+
Sbjct: 662 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 721

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+ 
Sbjct: 722 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 780

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILTV+E GFGKRTS+Y++RI++R G G+   ++      G +VA FPV+  
Sbjct: 781 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 838

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQ++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  +
Sbjct: 839 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 885


>gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington]
 gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A
 gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 905

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/885 (50%), Positives = 632/885 (71%), Gaps = 8/885 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 9   LVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RM QD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L++D+ K TV F  NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 129 SKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 189 GEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGKAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 309 KDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GLAIA++N+DE++ II+ S +   A++ELM R W   DI  LI L+D
Sbjct: 369 LLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLIKLVD 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    +   G +  +EVQ +AILE++L RLT + ++ +  +L  L  EI E L+IL SR+
Sbjct: 429 D-KVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILDSRT 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K+EL+ VK+E   PR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 488 RLLEILKEELIKVKEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKGRSG+ MRDED    +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L + E IT IMP PE++  W++L ++FAT  GN+RR+ L DF +I  +GKIA
Sbjct: 608 RPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQLNGKIA 667

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++R+   R S GVRG+ LAK D V
Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKEDSV 727

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++   ++  ++R  Y+  +  ++RL     EE     N  ++  +++ +   E+  
Sbjct: 728 ISMTVLKGINSTKEDRDAYLT-VPWEKRLKIAKGEEF----NLEALGVHLNADSILEMAN 782

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ G LIR  +  +RI  R T GV++F    DE+VVSV  I E+
Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAET 885


>gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
 gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
          Length = 908

 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/887 (51%), Positives = 633/887 (71%), Gaps = 9/887 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 10  GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 70  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 190 LGEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  S DI+++I+L
Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIEL 429

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           + DS+  +  +G MY L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS
Sbjct: 430 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 487

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV 
Sbjct: 488 TDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 547

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 548 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 607

Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  
Sbjct: 608 SRGRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIRRNALSDFQYVPS 667

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+
Sbjct: 668 SGKIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 727

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+ 
Sbjct: 728 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 786

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILTV+E GFGKRTS+Y++RI++R G G+   ++      G +VA FPV+  
Sbjct: 787 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 844

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQ++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  +
Sbjct: 845 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 891


>gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
          Length = 941

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/899 (51%), Positives = 639/899 (71%), Gaps = 14/899 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G   +++ +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G   +K Y K
Sbjct: 22  EGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMQENGFTADKPYKK 81

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG++AIYDA+ RMAQ +SLR+ LI+GQGNFGS+DGDPPAA RYTE 
Sbjct: 82  SARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSMDGDPPAAMRYTEA 141

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K+A  LL+ + +DTVDF PNYD S QEP VL A +PN+LVNG  GIAVGMATNIPTH
Sbjct: 142 RLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGANGIAVGMATNIPTH 201

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N GEV+D  +A+I  P+  L+ LM+I+ GPDFPTGA+ILGR GI++A+ TGRGSIV+R  
Sbjct: 202 NPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALILGRAGIRSAFETGRGSIVLRAR 261

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G R  I ++EIPYQVNKAA++E+IAELVR K+I  I+DLRDESDR G R+VIE
Sbjct: 262 AEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDLRDESDRSGLRIVIE 321

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +V+LN LYRYT+LQ+ F+VN +AL+  +P++  L   L+AF+ FREEV++RR+
Sbjct: 322 LKKDATPEVVLNHLYRYTNLQTSFAVNFLALHQGRPQQMGLRQALQAFIDFREEVILRRS 381

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KARDR H+LVGLAIAVAN+DEV+R+IR SP+  TAR  LM R W  +D+  L+ L
Sbjct: 382 RFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALMARDWPVADVGPLLAL 441

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +DDS   I ++ T+ L+E Q R ILELRL RLTGL RD I  EL+ +   I+E L+IL+S
Sbjct: 442 VDDSG-NIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELDEVAARIRELLEILAS 500

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R + ++  EL +V+ ++ +PR + IV+GL D +DE  +    MVVT++  GYVKR PL
Sbjct: 501 HPRRMELMADELRAVRAQIASPRLSEIVDGLADQDDESLVEPGLMVVTLTRDGYVKRTPL 560

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +RAQ RGG+GRS   MR +D V   F   TH  VLFF+S G  ++EKVW+LP   P A
Sbjct: 561 ETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLFFTSRGMAFREKVWKLPEAGPTA 620

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG++L  +L L + E +T ++P P+DE  W+NL++VFAT  GNVRRN+LSDF  +  SG 
Sbjct: 621 RGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFATSEGNVRRNRLSDFKNVRASGL 680

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP--ISAIRVFAGRNSVGVRGISLAK 731
           IAMKLD  D ++ V TC + ++++L T+ G+ +RF   +  +RVFAGR+S GVRGI LA 
Sbjct: 681 IAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTADVDTLRVFAGRDSTGVRGIKLAT 740

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTEEITSLKNDSSVEG 783
           GDQVI+++++ H +A  +ER  Y+K  + +RR            +          + VE 
Sbjct: 741 GDQVIALSVLRHVEASVEERAAYLKQAAQKRRNGEEAAEAAAEAEASLAEENAEAAEVEI 800

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALV 842
            +S ER  EL+ +E+ +LTV++ GFGKR+S+Y++R++ R G+GI  T+++  +  G ++V
Sbjct: 801 ALSAERFAELEEQEEILLTVTDGGFGKRSSAYEYRVTGRGGQGI--TNITLSSRTGRSVV 858

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           A FPV   D ++LV+D G LIR+P +++R+  R   GV++    + E+V S   + E +
Sbjct: 859 ATFPVRMGDDVMLVTDNGRLIRLPADQVRVTGRQAMGVMMLRLNEAEKVTSCFTVVEQQ 917


>gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 900

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/897 (51%), Positives = 638/897 (71%), Gaps = 7/897 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  VSI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+ AIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  IDNP++ LD L+E++ GPDFPTG +ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431
           T++ L K R++AH+ +GL IAV ++ EV++IIR + +P  A REL+ + W  S +I  +I
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEINTII 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI D S +   DG   L+E+QT+AIL+++L RLTGL +D +  EL+S+   IKE +  L
Sbjct: 422 GLISD-SMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMVVTV+  GY+KRV
Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVVTVTMNGYIKRV 540

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS YR Q RGGKG+ G  +++ED +T LF+ +THTS+LFFS+ G VY+ KV++LP+  P
Sbjct: 541 KLSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRLKVYKLPLAEP 600

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG+AL+NI  L+ GE IT IMP P +     N  +VF T HGN+RRN L+DF  I  +
Sbjct: 601 TARGRALVNIFPLSDGETITNIMPLPSENDENQN--IVFVTAHGNIRRNSLADFHYIPSN 658

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+KLD  D ++SV+ C++ + +LL+T LG+ +RF +S +R F  RNS GVRGI LAK
Sbjct: 659 GKIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLAK 718

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VISM I+       + +  Y+K +   +RL +     I S    +  +  I  +   
Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNFIDSKLEKTLNDLGIDNKLFL 777

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L + E+FILT++E GFGKRTS+Y++R++NR G GI  T++   +  G +VA FPV   D
Sbjct: 778 KLAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGI--TNILTTDRNGNVVASFPVEQGD 835

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I + +  +++ S
Sbjct: 836 NIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSIS 892


>gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 900

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/894 (52%), Positives = 636/894 (71%), Gaps = 7/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGSVDGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQ  +HFLL+D+ ++TVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP 
Sbjct: 122 ARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D CV  IDN ++ LD L++++ GPDFPTG  ILGR+GI++A+ATGRGSIVI+G
Sbjct: 182 HNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTILGRSGIRSAFATGRGSIVIQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+E++I  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L++ A+AD ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNRPVLMSLKEIIVAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431
           T++ L K R++AH+ +GL IAV ++DEV++I+R + +PE A ++L+ + W  S +I  +I
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEINTII 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI D S +   DG   L+E+QT+AIL+++L RLTGL RD +  ELNS+   +KE +  L
Sbjct: 422 GLISD-SMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIAFL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+  IK  L  V++    PR+T I E   D+E ED I +EDMVVTV+  GY+KRV
Sbjct: 481 GSEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIKRV 540

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS YR QRRGGKG+ G  +++ED +T LF+ +THTS+LFFS++G VY+ KV++LP+  P
Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLAEP 600

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG+AL+NI  L  GE IT IMP P +     N  +VFAT HGN+RRN L+DF  I  +
Sbjct: 601 TARGRALVNIFPLADGETITNIMPLPSESDESQN--IVFATAHGNIRRNSLADFHYIPSN 658

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI LAK
Sbjct: 659 GKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAK 718

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VISM I+       + +  Y+K +   +RL +     I S       +  I  +   
Sbjct: 719 NDSVISMTILNGIGVTTETKELYLK-VPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFL 777

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+FILT++E GFGKRTS+Y++R++NR G GI  T++   N  G +VA FPV  +D
Sbjct: 778 KLAANEEFILTITENGFGKRTSAYEYRVTNRGGIGI--TNILTTNRNGNVVASFPVEQDD 835

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            I+L++DKG LIR+ VN IRIA R+T+GV +F T   E+VVS  +I +    +E
Sbjct: 836 NIMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESREKVVSAAKIEDPGSTEE 889


>gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi]
          Length = 902

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/887 (51%), Positives = 633/887 (71%), Gaps = 9/887 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  S DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           + DS+  +  +G MY L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS
Sbjct: 424 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV 
Sbjct: 482 TDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 601

Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  
Sbjct: 602 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 661

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+
Sbjct: 662 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 721

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+ 
Sbjct: 722 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 780

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILTV+E GFGKRTS+Y++RI++R G G+   ++      G +VA FPV+  
Sbjct: 781 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 838

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQ++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  +
Sbjct: 839 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 885


>gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 924

 Score =  914 bits (2363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/878 (52%), Positives = 617/878 (70%), Gaps = 9/878 (1%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  G+VMGK
Sbjct: 1   MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA+ FLLD
Sbjct: 61  YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ +DTVDF+PNYD S  EP VL A +PN+LVNG  GIAVGMATNIPTHN GEV+D  +A
Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R  + IE+   DR+
Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEEIRKDRQ 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQVNKA + EKIA+LVR K I  I+D+RDESDR G RVVIELKR A+ DV+L
Sbjct: 241 AIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ FS NM+AL+  KP    L  IL+AF+ FREEV++RR ++ LNKARDR 
Sbjct: 301 NQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLNKARDRG 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGL +AVAN+DEV+ +IR +P+  TAR  LM R W+AS++  L++LI D    I  D
Sbjct: 361 HLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVI-ID 419

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G + L+E Q R ILELRL RLTGL R+ I+ EL  +  +I E L I+ SR R + ++++E
Sbjct: 420 GKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMREE 479

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           LL+ + E+ TPR T I + L D  DE  I    MVVT++  G++KR PL V+R+Q RGG+
Sbjct: 480 LLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQNRGGR 539

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GR+    R +D +   F   TH  V+FFSS G  Y+ KVW LP  +P A+G+AL+N+L  
Sbjct: 540 GRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRALVNLLPE 599

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
              + IT ++P P+DE  W +L++ FAT  GNVRRN+LSDF  I  SG IAMKLD  D +
Sbjct: 600 LGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKLDEGDSL 659

Query: 685 LSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + V TC +  D+ L TK  +C+RF I+   +RVFAGR S GVRGI L +GD VIS+ I+ 
Sbjct: 660 IGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVISLCILN 719

Query: 743 HADADYDERICYMKHMSAQRRL------ISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           H DA  +ER  Y++  +A+RR        S + E ++  +    + G++++ER +EL+ +
Sbjct: 720 HVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERFEELEQQ 779

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ +LTV++ GFG+R+S+YD+R+S R G+GI     S       +V   P  D   ++LV
Sbjct: 780 EEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLV 839

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +D G LIR+PV+++R+ SR   GV +F     E V+ V
Sbjct: 840 TDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICV 877


>gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 916

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/918 (51%), Positives = 630/918 (68%), Gaps = 31/918 (3%)

Query: 1   MTEHIISSDEEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ I + D     G      + I DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 1   MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   + G    K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF
Sbjct: 61  WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D DPPA+ RYTE RL K A  LL D+ KDTVDF+PNYDG+ QEP VL AR+PN+LVN
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGEV+DGC+A +DNP I+L+ L+ II GPDFPT  +ILG  G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAPLILGTAGA 240

Query: 238 KNAYATGRGSIVIRGVSHIEKT-SGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           + AY  GRGSI++R    +E+   GD R  IV+T IPYQV K+ ++EKIAE  ++KRI  
Sbjct: 241 RKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDES+R+G RVVI+LKR A+ DV+LNQL+R T  QS F  NM+A+ G +PE   L 
Sbjct: 301 ISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPANMLAIRGGRPELLGLK 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+++FV FREEV+ RRTK+ L KARDRAH+L+GL IAV NLDEVV+IIR S NP  AR 
Sbjct: 361 DIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARE 420

Query: 416 ELMQRSWNASDIKD---LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            L+ R W   +I     L++ I+D + T G++ T  LSE+Q RAIL+LRL RLT LGRD+
Sbjct: 421 RLLAREWPIGEIAPYIRLVEAIEDDALT-GTE-TYRLSEIQVRAILDLRLHRLTALGRDE 478

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I  EL  L   I E L IL+ R +L G++++EL++VK    TPR + I      ++DED 
Sbjct: 479 IGEELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATPRLSEITAPADGIDDEDL 538

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I R+DMVVT++  GY+KR PLS +RAQ RGGKGRSG+  +DED +  +F+ STHT VLFF
Sbjct: 539 IERDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFF 598

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFA 651
           S+ G VY++KVWRLP G    RG+ ++N+L SL+QGE I  ++  PEDE+ W  L+V+FA
Sbjct: 599 STAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFP 709
           T  GNVRRN +  F  I  +GK AMK +  DE  ++ V   ++ +D+LL ++ G+ +RFP
Sbjct: 659 TAKGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFP 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGD 768
              +R F  R S GVRG++L  GD+VIS++I+      D +ER  Y+++           
Sbjct: 719 ADDVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEERDEYLRY----------- 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                  K +   E  I+ ER  EL  KEQF+LTV   G+GK +S+Y++R + R G+GI 
Sbjct: 768 ----APWKAEKDGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGI- 822

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++  I   G +VA FP    DQ++LV+D+  LIR+P++ +R+  R + GV +F+ A +
Sbjct: 823 -VNIDNIERNGLVVASFPAARADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVADN 881

Query: 889 ERVVSVERIRESEIVDEA 906
           E+VVS  R+ E+E  D+A
Sbjct: 882 EQVVSAVRLAETEGDDDA 899


>gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
 gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
          Length = 906

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/882 (51%), Positives = 628/882 (71%), Gaps = 8/882 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y K A
Sbjct: 10  LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 70  RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL
Sbjct: 130 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + 
Sbjct: 190 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    +R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ IELK
Sbjct: 250 IENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  RT Y
Sbjct: 310 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM   W A +I  L+ L+D
Sbjct: 370 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILPLVKLVD 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+IL SR+
Sbjct: 430 DKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRT 488

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL I+K EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVPLS 
Sbjct: 489 RLLEILKAELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 548

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ +G
Sbjct: 549 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 608

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L  F ++  +GKIA
Sbjct: 609 RPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAFKKLQSNGKIA 668

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++LD  D+++ V+ C ++  ILL TK G+ +RF + ++RV   R S GVRG+ LAK D V
Sbjct: 669 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGMKLAKEDSV 728

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM ++    +  ++R  Y+  +  ++RL     E      N   +  +++     E+  
Sbjct: 729 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEAF----NPEELGVSLTAPAILEMAK 783

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+++L
Sbjct: 784 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 841

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++ G LIR  +  +RI  R T GV++F     E+VVSV  I
Sbjct: 842 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLI 883


>gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
 gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
          Length = 898

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/884 (49%), Positives = 641/884 (72%), Gaps = 6/884 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K A
Sbjct: 7   VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKAA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL
Sbjct: 67  RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AAHFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL
Sbjct: 127 ARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD C+A IDNPDI  D L++I+ GPDFPTG  ILG  GI++A+ TG+G+I+++G +H
Sbjct: 187 GEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGKTH 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     ++ I++ EIPYQVNKA ++E+I ELV+EKRI  I DLRDES++ G RV IELK
Sbjct: 247 VEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  S  V+LNQ+   T L++ FS+N + L+  KP+  +L+ I+  F+ +R+EV+ RRT++
Sbjct: 307 KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRTQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434
            L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +K++I+L+
Sbjct: 367 RLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIELV 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            DS   + +D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L ++
Sbjct: 427 ADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLGNK 485

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             LL ++K  L  +K +L  PR+T I     + + ED I +EDMVVTV+  GY+KRV LS
Sbjct: 486 ESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVKLS 545

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGR G  +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R
Sbjct: 546 NYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPTSR 605

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L+NI  L++ E IT++MP PE++     L ++FAT  GN+RRN LSDF  +  +GKI
Sbjct: 606 GRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNGKI 665

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGD 733
           AM LD  D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L ++ D
Sbjct: 666 AMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSEED 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           QVISM++++  + D + +  Y+K +  ++RL+  +   I     +  V+  +S++    +
Sbjct: 726 QVISMSVLIAMEVDSETKDLYLK-IPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFMSM 784

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E+FILTV+E GFGKRTS+Y++R + R G G+     ++ N  G +++ F V  ND I
Sbjct: 785 VQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESNDHI 842

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L+++KG LIR+ VN+IRI  R+T+GV +F T K E+VVSV ++
Sbjct: 843 MLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKV 886


>gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 933

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/903 (51%), Positives = 634/903 (70%), Gaps = 13/903 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I  D      +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTE--IPDDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 59  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG  
Sbjct: 119 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN GE++D  +A+I+ PD+ LD L++ + GPDFPTG  ILGR GI++A
Sbjct: 179 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTILGRAGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS++IR  + IE+   DR  I+VTEIPYQVNKA + E+IA+LVR K++  I+D+R
Sbjct: 239 FETGRGSVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P    L  +L+A
Sbjct: 299 DESDRSGMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLEA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V++RR ++ LNKARDRAH+LVGL IAVAN+D V+ +IR +P+   AR  LM R
Sbjct: 359 FIRFREDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W+A+D+  L++LI D    I  DG ++L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 419 GWDAADVAPLLELIHDEGNVI-VDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEV 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            + I + L+I++SR R + +++ EL+S++ EL TPR T I +   D  DE  I    MVV
Sbjct: 478 AVRINDLLEIIASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQTDESLIEPGQMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D +   F   TH  VLFFSS G  Y+
Sbjct: 538 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKAYR 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L     + IT ++P P+DE  W NL++VFAT  G+VRRN
Sbjct: 598 EKVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718
           +LSDF  I  SG IAMKL+  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 658 RLSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITS 774
           R S GVRGI LA+GD V S+ ++ H DA  +ER  Y++  +A+RR  +     +T+EIT+
Sbjct: 718 RGSSGVRGIRLAEGDSVNSLCVLNHVDATVEERAAYLRMANARRRAEAAQEDEETDEITA 777

Query: 775 LKNDSSVEGN---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
             +D+ +  +   ++ ER  EL+  E+ +L VS  GFG+R+S+YD+R+S R G+GI    
Sbjct: 778 -GDDAEIPADDLPLTPERFAELEAAEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMT 836

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S      A+VA  PV +   ++LV+D G LIR+P+ ++RI SR   GV +F     E V
Sbjct: 837 FSANKRGNAVVATLPVLEGTDVMLVTDAGRLIRLPIGQVRIMSRQASGVTLFRLNDTEEV 896

Query: 892 VSV 894
            SV
Sbjct: 897 TSV 899


>gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
          Length = 898

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/884 (49%), Positives = 641/884 (72%), Gaps = 6/884 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K A
Sbjct: 7   VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKAA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL
Sbjct: 67  RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AAHFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL
Sbjct: 127 ARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD C+A IDNPDI  D L++I+ GPDFPTG  ILG  GI++A+ TG+G+I+++G +H
Sbjct: 187 GEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGKTH 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     ++ I++ EIPYQVNKA ++E+I ELV+EKRI  I DLRDES++ G RV IELK
Sbjct: 247 VEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  S  V+LNQ+   T L++ FS+N + L+  KP+  +L+ I+  F+ +R+EV+ RRT++
Sbjct: 307 KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRTQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434
            L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +K++I+L+
Sbjct: 367 RLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIELV 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            DS   + +D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L ++
Sbjct: 427 ADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLGNK 485

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             LL ++K  L  +K +L  PR+T I     + + ED I +EDMVVTV+  GY+KRV LS
Sbjct: 486 ESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVKLS 545

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGR G  +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R
Sbjct: 546 NYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPTSR 605

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L+NI  L++ E IT++MP PE++     L ++FAT  GN+RRN LSDF  +  +GKI
Sbjct: 606 GRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNGKI 665

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGD 733
           AM LD  D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L ++ D
Sbjct: 666 AMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSEED 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           QVISM++++  + D + +  Y+K +  ++RL+  +   I     +  V+  +S++    +
Sbjct: 726 QVISMSVLIAMEVDSETKDLYLK-VPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFMSM 784

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E+FILTV+E GFGKRTS+Y++R + R G G+     ++ N  G +++ F V  ND I
Sbjct: 785 VQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESNDHI 842

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L+++KG LIR+ VN+IRI  R+T+GV +F T K E+VVSV ++
Sbjct: 843 MLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKV 886


>gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 900

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/890 (50%), Positives = 615/890 (69%), Gaps = 61/890 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ MM+   +W K   K ARI
Sbjct: 19  TISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARI 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG YHPHG+++IY+A+ RMAQD+S+RL L++GQGNFGSVDGDP AA RYTE RL +
Sbjct: 79  VGDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLAR 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           AA  LL D+ K+TV+F  NYD +  EP VL A YPN+LVNG  GIAVGMATNIP HN GE
Sbjct: 139 AAESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+  C A ++NP+I  + L EI+ GPDFPTGA+I+GR GI+ AY TGRGSI++R  + ++
Sbjct: 199 VIAACEAYVNNPEITTEELTEIVPGPDFPTGALIMGRHGIREAYRTGRGSIIMRARAEVQ 258

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
             + DRE I+V EIPYQVNKA +LE+I E+VR+K +  I+D+RDESDR G R+VIE+KR 
Sbjct: 259 TNAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRD 318

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ DV+LN+LYR+T LQ+ F VNM+A+N  +P +  L  +++AF  FR++VV++RT +LL
Sbjct: 319 AAGDVVLNKLYRHTRLQTSFPVNMLAMNAGRPIQMGLKDVIEAFCEFRKDVVIKRTTFLL 378

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NK+RDRAH+L GL +A+A++DE++ +I+ +P+ ETAR EL   +W A ++   I LIDD 
Sbjct: 379 NKSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDDP 438

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            + +  D    LSEVQ RAILELRL RLTG+ RD +  E   L  +I + LDIL S +R+
Sbjct: 439 GHAV-VDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRV 497

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             +I  EL + ++ L   RRT I + L D +DED I +EDMVVTVSH GY+KRVPLS+YR
Sbjct: 498 SQVILDELAATRERLSDDRRTEITDQLADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYR 557

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKGR+G+  RDEDFVT LF+ +THT +LFF+S G VY+ K ++LP  +PQ+ GKA
Sbjct: 558 AQRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPESAPQSLGKA 617

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L +   E I T+MP P+DESSW +L V+FAT  GNVRRN LSDF  I R+GKIAMK
Sbjct: 618 MVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKRNGKIAMK 677

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           +   DE++ V  C  ++D+L+ T+ G+ +RF  +A+RVF GR+S GVRGI L   D+V+S
Sbjct: 678 MQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVS 737

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M+I+   + +Y                                                 
Sbjct: 738 MSIIADPENEY------------------------------------------------- 748

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             IL+V+E G+GKRT   D+R S R G+G+   ++S  N  G ++A F V + DQ++LV+
Sbjct: 749 --ILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRN--GQVMASFTVVEEDQLMLVT 804

Query: 858 DKGTLIRVPV-----NEIRIASRATKGVVIFSTA--KDERVVSVERIRES 900
           ++G +IR+ V     + IRIASR T GV +F  A   DE+VVS   I ES
Sbjct: 805 NQGQIIRIRVHGGEGDSIRIASRKTLGVRLFDVADDNDEKVVSAGLIHES 854



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++  +  G  +R +  DF    R+GK        K+ +   LV V P ND+D +++ +  
Sbjct: 648 VMFATASGNVRRNNLSDFTNIKRNGK-----IAMKMQDGDELVGVIPCNDDDDVLMATRN 702

Query: 860 GTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901
           G  IR   N +R+   R + GV        +RVVS+  I + E
Sbjct: 703 GKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVSMSIIADPE 745


>gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
 gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
          Length = 912

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/883 (53%), Positives = 618/883 (69%), Gaps = 11/883 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K AR 
Sbjct: 25  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKSYRKSARP 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ KDTV+++ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I+ PD+  + L++ + GPDFPTG ++LGRTG + AY  GRGS++IR  + +E
Sbjct: 205 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRTGARKAYLEGRGSVIIRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IVV EIPYQVNKA M+EKIAE VREK+I  I+ ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V++NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+ FREEVV RRT YLL
Sbjct: 325 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREEVVARRTAYLL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD 
Sbjct: 385 RKARERSHVLCGLAVAVTNIDEVVATIRSSADASEARSKLMTRRWPAQDILPYIALIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IKE LDIL SR R+
Sbjct: 445 THTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLDILGSRDRI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 505 MSIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG SG  ++++D VT LF+ +THT +LFF++ G  YK K WRLP G   ++GKA
Sbjct: 565 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTSKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +INIL + QG  I  I+P   DE  W+ L +VFAT  G VRRN LSDF  +  +GKIAMK
Sbjct: 625 IINILPIPQGVSIAAILPIDRDEKDWSELQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 684

Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +   +   +++    + ++D++L T  G+ +RFP + +RVF  R+SVGVRG+ L   D+
Sbjct: 685 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSTDVRVFNSRSSVGVRGVRLTGDDK 744

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H +A  DER+ Y+K     RR ++G  ++    + +++ E    +    ++ 
Sbjct: 745 VVSMSVIRHFNATSDERVAYLK----MRRAMAGLADDAEIEEEETTGESVEID--YAKMS 798

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++ +G GK +SS+D+ +  R G G++A D  K    G +VA FPV  +DQI+
Sbjct: 799 AAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGPIVASFPVEMDDQIM 856

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           L + KG  IRVPV  I   SR+  GV +F+T K E VVSV  I
Sbjct: 857 LATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWI 899


>gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 880

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/876 (51%), Positives = 629/876 (71%), Gaps = 7/876 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y K ARI G+VMGKYHPHG+AAI
Sbjct: 1   MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDF
Sbjct: 61  YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           RPNYDG+  EPVVL A +P++LVNG  G+AVGMATNIP+HNLGE++D C+  +DNP++ L
Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           D L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G +HIE    DR+ IV+ EIPY
Sbjct: 181 DELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI+L+R A A  ILNQ+   T L
Sbjct: 241 QVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTPL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           +S FSVN + LN  +P   +L  I++AF+ FR+EV++RRT++ L K R++AH+ +GL IA
Sbjct: 301 RSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           V ++DEV++IIR + +P  A REL+ + W  S +I  +I+LI DS+  +  DG   L+E+
Sbjct: 361 VLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFL-KDGVYRLTEL 419

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L S  +L+  IK  L  +K+  
Sbjct: 420 QIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRF 479

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             PR+T I E   D+E ED I +EDMV+TV+  GY+KRV LS YR QRRGGKG+ G  ++
Sbjct: 480 AVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLK 539

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           +ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+  P ARG+AL+NI  L +GE IT 
Sbjct: 540 EEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITN 599

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           IMP P +     N  +VF T +GN+RRN L+DF  I  +GKIA+KLD  D+++SV+ C +
Sbjct: 600 IMPLPSENDENQN--IVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNE 657

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + + L+T+ G+ +RF +S +R F  RNS GVRGI LAK D VISM I+       + + 
Sbjct: 658 IDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKE 717

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
            Y+K +   +RL +     I S    +  +  I  E   +L + E+FILT++E GFGKRT
Sbjct: 718 LYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRT 776

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           S+Y++RI+NR G GI  T++   +  G +VA FPV   D I+L++DKG LIR+ VN+IRI
Sbjct: 777 SAYEYRITNRGGVGI--TNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIRI 834

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           A R+T+GV +F T   E+VVSV +I + +  +++ S
Sbjct: 835 AGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSIS 870


>gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
 gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
          Length = 902

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/887 (51%), Positives = 633/887 (71%), Gaps = 9/887 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  S DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           + DS+  +  +G MY L+  Q +AILE+RL RLTGL ++ +  EL S+   I E   ILS
Sbjct: 424 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILS 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV 
Sbjct: 482 TDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 601

Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  
Sbjct: 602 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 661

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+
Sbjct: 662 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 721

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+ 
Sbjct: 722 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHAIEREQF 780

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILTV+E GFGKRTS+Y++RI++R G G+   ++      G +VA FPV+  
Sbjct: 781 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 838

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           DQ++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  +
Sbjct: 839 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 885


>gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ]
 gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ]
          Length = 906

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/891 (50%), Positives = 639/891 (71%), Gaps = 9/891 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + +K Y K 
Sbjct: 4   GVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGSVDGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + QEPVVL A +PNVLVNG GG+AVGM+TNIP+HN
Sbjct: 124 LAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  V  IDNP++ L+ LM +I GPDFPTG VI+G  GIK+A+ATGRG+I+I+G +
Sbjct: 184 LGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQGKT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE+    R+ I++ EIPYQ NKA ++E+I ELV+EK+I  ++DLRDES++ G RV IEL
Sbjct: 244 HIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+  ++ V+LNQL   T L++ FS+N + L+  +P   +LI I++ FVAFR+EV+VRRT+
Sbjct: 304 KKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEVLVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433
           Y L K R+RAH+ +G+ IAV N+DE+V IIR S +   A   L +R+W+ S +++ +I+L
Sbjct: 364 YRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVRGMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + DS+  I   G   L+  Q +AILE+RL RLTGL +  +  EL S+   I E   ILS+
Sbjct: 424 VSDSTGVI-EGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ ++++ LL VK  + TPRRT I E   D++ E  I RE+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDAESLIPREEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPAS 602

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L +GE IT++MP P+   +    ++ VVFAT  GN+RRN L+DF  +  +
Sbjct: 603 RGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALADFQYVPSN 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL++++G+ +RF +  +R F GR S GVR I LA+
Sbjct: 663 GKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKLAE 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE-EITSLKNDSSVEG-NISEER 789
           GDQVISM+++  ++A  + R  Y+K +    R+ + +++ E    +    +EG  +SEE 
Sbjct: 723 GDQVISMSVLHGSEASSEVREAYLK-IPVDSRIKAAESDGESIGKRVSGMLEGLQLSEET 781

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  KEQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA F V  
Sbjct: 782 FVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARN--GKVVASFSVAH 839

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            DQ++L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV  + +S
Sbjct: 840 TDQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKGEKVVSVALVIDS 890


>gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 898

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/893 (49%), Positives = 636/893 (71%), Gaps = 25/893 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K A
Sbjct: 7   VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL
Sbjct: 67  RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAAHFLL+D+ +DTVDFRPNYD +  EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL
Sbjct: 127 AKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D C+A IDNP+I  D L+ I+RGPDFPTG  ILG  GI++A+ TG+G+I+I+G +H
Sbjct: 187 GEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIIQGKTH 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     ++ I++ EIPYQVNKA ++E+I EL++EK+I  I DLRDES++ G RV IELK
Sbjct: 247 LEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  S  VILNQ+   T L++ FS+N + L+  KP+  +L  I+  FV +R+EV+ RRT++
Sbjct: 307 KQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRTQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434
            L K R+RAH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + ++++I+L+
Sbjct: 367 RLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREMIELV 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            DS  +I  D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L ++
Sbjct: 427 ADSK-SIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTELLKNK 485

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             LL +IK     +K +L  PRRT I     + + ED I +EDMVVTV+  GY+KR  LS
Sbjct: 486 ESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIKRAKLS 545

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGGKGR G  +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R
Sbjct: 546 NYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSR 605

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L+NI  L++ E IT++MP P++      L +VFAT  GN+RRN LSDF  +  +GKI
Sbjct: 606 GRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVPSNGKI 665

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM LD+ D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+  D 
Sbjct: 666 AMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSDDN 725

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VISM+++L  D D +++  Y+K +   +R+          +K +  V G I++  C +L 
Sbjct: 726 VISMSVLLAMDIDSEKKDLYLK-VPLDKRM---------CVKEEGVVNGGIAKILC-DLG 774

Query: 795 LK----------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           L+          EQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA 
Sbjct: 775 LEQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARN--GNVVAS 832

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           FPV  ND I+L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV +I
Sbjct: 833 FPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKI 885


>gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake]
 gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake]
          Length = 898

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/895 (49%), Positives = 637/895 (71%), Gaps = 9/895 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + SVSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K A
Sbjct: 7   VISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL
Sbjct: 67  RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AAHFLL+D+ +DTVDFRPNYD +  EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL
Sbjct: 127 ARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD C+A IDNP+I  D L+ I+RGPDFPTG  ILG  GI++A+ TG+G+I+++G +H
Sbjct: 187 GEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGKTH 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     ++ I++ EIPYQVNKA ++E+I ELV+EK+I  I DLRDES++ G RV IELK
Sbjct: 247 LEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  S  V+LNQ+   T L++ FS+N + L   KP+  +L+ I+  FV +R EV+ RRT++
Sbjct: 307 KQVSHQVVLNQILGLTPLRTTFSINTLVLENNKPKVMSLLDIISTFVEYRREVLTRRTQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434
            L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + ++++I+L+
Sbjct: 367 RLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREMIELV 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D+  ++  D    L+ VQ ++ILE++L RLT L ++ +  +L S+   I++  ++L ++
Sbjct: 427 ADTK-SLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELLKNK 485

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             LL +IK  L+ VK +L  PRRT I     + + ED I +EDMVVTV+  GY+KR  LS
Sbjct: 486 EALLKLIKDGLIDVKTKLAVPRRTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRAKLS 545

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKGR G  +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R
Sbjct: 546 NYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSR 605

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L+NI  L++ E IT++M  P++     +L +VFAT  GN+RRN L+DF  +  +GKI
Sbjct: 606 GRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNALADFQYVPSNGKI 665

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM LD  D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+  D 
Sbjct: 666 AMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSQDN 725

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VISM+I+L  D   +++  Y+K +   +R+   +   I +       +  + ++    + 
Sbjct: 726 VISMSILLAMDIGSEKKDLYLK-VPLDKRIAVKEEGFIGTGIVKILADLGLDQDTFMTMV 784

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQFILTV+E GFGKRTS+Y++R + R G G+   ++      G +VA FPV  ND I+
Sbjct: 785 QNEQFILTVTENGFGKRTSAYEYRTTLRGGVGV--VNILTTTRNGNVVASFPVESNDHIM 842

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESEIVDE 905
           L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV +I     +SEI D+
Sbjct: 843 LITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKIIDAKDDSEIDDD 897


>gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594]
 gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594]
          Length = 931

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/893 (49%), Positives = 602/893 (67%), Gaps = 36/893 (4%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    + Y K A+I 
Sbjct: 7   IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAKIV 66

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ RYTE RL K 
Sbjct: 67  GDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLAKV 126

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A+ LLDDL KDTVDF  NYDGS +EP VL AR+PN+LVNG GGIAVGMATN+P HNLGEV
Sbjct: 127 ANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLGEV 186

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGC+A I NP I  + LM+ I GPDFPT  +ILG+ G + AY TGRGS+++R    IE+
Sbjct: 187 IDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARHEIEE 246

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             GDR+ IV T IPYQV K+ ++EKIA+  +EKRI  I+D+RDES R+G RVV++LKR A
Sbjct: 247 KRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLKRDA 306

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S +V+LNQ++RYT  Q+ F  NM+A+ G +PE  TL  I++AFV+FREEV+ RRTK+ LN
Sbjct: 307 SPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRTKFELN 366

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+RAHVL+GL +AV+NLDEVV +IR S NP+ AR +L  + W   DI   I LI+   
Sbjct: 367 KARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEAIE 426

Query: 439 YTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            T   +G  Y LSE Q +AIL+LRL RLT LGRD+I +EL  L  EI+E L IL+ R +L
Sbjct: 427 PTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRGKL 486

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            G+++ EL+ +KDE  TPR + I      +EDED I REDMVVTV+H GY+KR PL+ +R
Sbjct: 487 FGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTPLATFR 546

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ RGGKGRSG+  +DED V +LF+ STH  VLFF++LG VY+ KVW+LP GSP  +G+ 
Sbjct: 547 AQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEGSPTTKGRP 606

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L L   ER+T ++  PEDE SW  L +VFAT+ G VRRN +  F  +   GK AM 
Sbjct: 607 MVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYAMG 666

Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
               + D ++ VE  +++ +I L +  G+ +RF  +  R    R  +GVRG++L    +V
Sbjct: 667 FVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDAKV 726

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SMA++   + D + R  Y++                 ++  ++  E  +  ++  +++ 
Sbjct: 727 VSMAVLDRLEQDMETREAYLR----------------AAIWKNNDAEHTLDSDKVAQMEE 770

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGALVAVFPVNDNDQI 853
            E+FILT++  G+GK +S+Y++R   R G+G+    T  S     G +VA FPV    Q+
Sbjct: 771 GEEFILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQL 830

Query: 854 ILVSDKGTLIRVPVNEIR--------------IASRATKGVVIFSTAKDERVV 892
           +LV+D+  LIR+P+ E R              +  R + GV +F  AK E +V
Sbjct: 831 MLVTDQAKLIRMPI-EFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIV 882


>gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
 gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
          Length = 946

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/905 (49%), Positives = 610/905 (67%), Gaps = 38/905 (4%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T + I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    + + K A+
Sbjct: 19  TRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASNEGGFVAGRPFRKSAK 78

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMG YHPHG+AAIYDALARM Q+WSLR+ LI+GQGNFGS+D DPPA+ RYTE RL 
Sbjct: 79  IVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLA 138

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A+ LLDDL KDTVDF  NYDGS +EP VL AR+PN+LVNG GGIAVGMATNIP HNLG
Sbjct: 139 RVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNGAGGIAVGMATNIPPHNLG 198

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DGC A +DNP I  + L EII GPDFPT  +ILG+TG + AY TGRGSI+ R    I
Sbjct: 199 EVIDGCFAYMDNPAITNEELFEIIPGPDFPTAPLILGKTGARAAYTTGRGSILQRARHEI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+  GDR+ IV+T IP+QV K+ ++EKIAE  ++KRI  I+D+RDES RQG RVV++LKR
Sbjct: 259 EERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISDIRDESSRQGVRVVVDLKR 318

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            ASA+V+LNQ++RYT  QS F  NM+A++G +PE  TL   ++AF+ FREEV+ RRTKY 
Sbjct: 319 DASAEVVLNQIWRYTPAQSSFPANMLAISGGRPEVLTLREFIQAFITFREEVITRRTKYE 378

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD---LIDL 433
           LNKARDRAH+L+GL +AV+NLDEVV +IR +P P  AR  L+ + W   DI     L++ 
Sbjct: 379 LNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLLAKEWPIGDIAQYIALVEA 438

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I+ S    G  GT  LSE Q +AIL+LRL RLT LGRD+I +EL  L + I+E L IL+ 
Sbjct: 439 IEPSDEQTG--GTYRLSERQVKAILDLRLHRLTALGRDEIGDELKLLSLSIEEYLSILAD 496

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R +L G+++ EL  ++    TPR + I      ++DED I RE+MVVTV+H GY+KR PL
Sbjct: 497 RVKLYGVMRGELEEIRAAYATPRVSEIAPAWDGIDDEDLIEREEMVVTVTHGGYIKRTPL 556

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +RAQ RGGKGRSG+  +DED V +LF+ STH  VLFF++ G VY+ KVW+LP G PQ 
Sbjct: 557 DTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGRVYRMKVWKLPEGGPQT 616

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ ++N+L L   ER+T ++  PEDE+ W  L +VFAT+ G VRRN +  F  +  +GK
Sbjct: 617 KGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMVRRNSMDAFTNVPSNGK 676

Query: 674 IAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            AM    DS D ++ VE  T++ +I L +  G+ +RF  +  R    R  +GVRG+ L +
Sbjct: 677 YAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARETKSRTGIGVRGMKLKE 736

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G +V+SMA++   + D + R  Y++              E  + +ND +++     E+ +
Sbjct: 737 GQKVVSMAVLDAGERDTEVREAYLR------------AAEWKNNENDYTLDA----EKVE 780

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGALVAVFPVND 849
           E+   E+FILT++ +G+GK +S+Y++R   R G G+       S  +  G +VA FPV  
Sbjct: 781 EMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNGTVVASFPVKH 840

Query: 850 NDQIILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVER 896
             Q++LV+D+  LIR+P+N                I+ R + GV IF+ AK E++V    
Sbjct: 841 GSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGVRIFNVAKGEQIVGAAL 900

Query: 897 IRESE 901
           I E+E
Sbjct: 901 IDETE 905


>gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354]
          Length = 941

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/909 (48%), Positives = 613/909 (67%), Gaps = 38/909 (4%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    + Y K A+I 
Sbjct: 20  IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVAGRPYRKSAKIV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG++AIYDALARM Q WS+R+ LI+GQGNFGS+D DPPA+ RYTE RL+K 
Sbjct: 80  GDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGSMDPDPPASMRYTEARLEKV 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A+ LLDDL KDTVDF  NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 140 ANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGAGGIAVGMATNIPPHNLGEV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGC+A I NP I  + L+E I GPDFPT  +ILG++G ++AY TGRGSI++R    +E 
Sbjct: 200 IDGCLAFIANPAITSEELIEYIPGPDFPTAPLILGQSGARSAYLTGRGSIMMRARHEVET 259

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR+ IV+T IPYQV K  ++EKIAE  ++KRI  I+D+RDES R+G RVV++LKR A
Sbjct: 260 GRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDIRDESSREGVRVVVDLKRDA 319

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S +V+LNQL+RY+  Q+ F  NM+A+ G +PE   L  I++AF++FRE+V+ RRTK+ LN
Sbjct: 320 SPEVVLNQLWRYSPAQASFPANMLAIRGGRPEVLALRDIIQAFISFREQVITRRTKFELN 379

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD---LIDLID 435
           KARDRAH+L+GL +AV+N+DEVV IIR + NP  AR +L+++ W   DI     L++ I+
Sbjct: 380 KARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLRKEWPIGDIAQYIALVEAIE 439

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            SS   G  GT  LSE Q +AIL+LRL RLT LGRD+I +EL  L  +I+  L IL+ R 
Sbjct: 440 PSSDEHG--GTYRLSERQVKAILDLRLHRLTALGRDEIGDELKELATKIEYYLSILADRR 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  ++++EL +++D+  TPR + I      ++DED I +EDMVVTV+H GY+KR PL  
Sbjct: 498 KLYQVMREELQAIRDQYATPRMSEIAPAWDGVDDEDLIEQEDMVVTVTHGGYIKRTPLHA 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGGKGRS +  +DED V ++F+ STH  VLFF++ G VY+ KVW+LP GSP  +G
Sbjct: 558 FRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRVYRLKVWKLPEGSPTTKG 617

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L + ER+T ++P P+DE+ W+ L +VFAT+ G VRRN +  F +I  +GK A
Sbjct: 618 RPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNIVFATEQGMVRRNSMDAFTRIPSNGKYA 677

Query: 676 MKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           M    DS D ++ V    ++ +I L +  G+ +RF  +  R    R  +GVRG+ L +GD
Sbjct: 678 MGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMKLKEGD 737

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+A++     D + R  Y++                 ++  ++  +  +  E  QE+
Sbjct: 738 KVVSLAVLHPLSHDMETREAYLR----------------GAVWKNNDTDHTLDTELAQEM 781

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI-RATDVSKINEIGALVAVFPVNDNDQ 852
           +  E+FILT++  G+GK +S+Y++R   R G+GI    + S     G +VA FPV    Q
Sbjct: 782 EENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPVVASFPVRHGMQ 841

Query: 853 IILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++LV+D+  LIR+P++                I  R + GV +F  AK E++V   RI E
Sbjct: 842 LMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKVFDVAKGEQIVGAARIDE 901

Query: 900 -SEIVDEAE 907
            ++  +EAE
Sbjct: 902 DADPENEAE 910


>gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium]
          Length = 890

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/887 (48%), Positives = 625/887 (70%), Gaps = 14/887 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + +EM+ SYL YA++VI+ RA+PD+RDG K VHRRIL+ + ++G +  K + K A
Sbjct: 10  IKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEVMGKYHPHG++AIY+ + RMAQD+S+ + LI+GQGNFGS+DGD  AA RYTE R+
Sbjct: 70  LIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTESRM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L DL  +TV FRPNYDGS QEP VL  R P++L+NG  GIAVGMATNIP HNL
Sbjct: 130 AKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D C A+++NP ++L  +ME ++GPDFPTG  ILG +GI NA+ TGRGSIV+RG + 
Sbjct: 190 GELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVMRGKAS 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+  GD+E IVVTEIPYQVNKA ++EKI EL R+K +  I ++RDES+R G R+VIE+K
Sbjct: 250 VEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVIEIK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  ++ VILNQLY++T LQ  FS N++AL    P+   L   L  F+ FR +V+VRRT+Y
Sbjct: 310 RDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVIVRRTRY 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARD+AH+L+G A+A++++D+V+ +I+ + + ++A   LM  +W+A+ IK  + L+ 
Sbjct: 370 FLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYLALLQ 429

Query: 436 DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                    G  Y LSE+Q  AIL+LRL +LTG+ +++I+++L S    I+E +DIL   
Sbjct: 430 GPQ---AESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGKP 486

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+  I+  E  ++K +  TPRR+ I+    D+EDED I  E+MVVT+S  GY+KRVPLS
Sbjct: 487 ERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVTISFGGYIKRVPLS 546

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ RGGKGRSG+ M++ED+V D+ + +TH  +LFF+++G VY+  V +LPIG+PQA+
Sbjct: 547 TYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQLPIGTPQAK 606

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+A+IN+L + + E+IT+I+   ++    + L  +F T  G VRRN +SDF +I  +GK 
Sbjct: 607 GRAIINVLPIEKDEKITSILDVSKEMDDASTL--LFITSKGQVRRNAVSDFERIQSNGKR 664

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM L+  + +++V+TC  +N +LL T+ G  +RF  + +RVF+GR S GVRGI LA  D 
Sbjct: 665 AMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDDT 724

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +IS +++   + D  ER  Y++  +A+R  I G+TE+      D++VEG +S+ER  EL+
Sbjct: 725 IISASVLEGFNVDPAERALYLRARAAERG-IQGETED-----QDTTVEGALSDERLLELQ 778

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQ+ILT+++ GFGKRTS Y++R + R G G     +S  N  G +V  FPV   DQI+
Sbjct: 779 EHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKN--GHVVNAFPVIPQDQIM 836

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           L+++KG L+R  VN+IRIA R T+GV++    KDERVV+V RI E+E
Sbjct: 837 LITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETE 883


>gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 854

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/850 (51%), Positives = 606/850 (71%), Gaps = 7/850 (0%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G +  K Y K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS
Sbjct: 1   MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG 
Sbjct: 61  IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            G+AVGMATNIP+HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++
Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRS 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A+ATGRGSIV++G +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++
Sbjct: 181 AFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEI 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVI+L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I++
Sbjct: 241 RDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIE 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+ FR+EV++RRT++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ 
Sbjct: 301 AFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLN 360

Query: 420 RSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           + W  S +I  +I+LI DS+  +  DG   L+E+Q +AIL+++L RLTGL +D +  EL+
Sbjct: 361 KEWKTSNEINTIIELISDSASFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELS 419

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           S+   IKE +  L S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDM
Sbjct: 420 SMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDM 479

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+TV+  GY+KRV LS YR QRRGGKG+ G  +++ED +T+LF+ +THTSVLFFS++G V
Sbjct: 480 VITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRV 539

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ KV++LP+  P ARG+AL+NI  L +GE IT IMP P +     N  +VF T +GN+R
Sbjct: 540 YRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQN--IVFTTAYGNIR 597

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RN L+DF  I  +GKIA+KLD  D+++SV+ C + + + L+T+ G+ +RF +S +R F  
Sbjct: 598 RNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKS 657

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RNS GVRGI LAK D VISM I+       + +  Y+K +   +RL +     I S    
Sbjct: 658 RNSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEK 716

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +  +  I  E   +L + E+FILT++E GFGKRTS+Y++RI+NR G GI  T++   +  
Sbjct: 717 TLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGI--TNILTTSRN 774

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FPV   D I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I 
Sbjct: 775 GNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIE 834

Query: 899 ESEIVDEAES 908
           + +  +++ S
Sbjct: 835 DPDSTEDSIS 844


>gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
 gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
          Length = 933

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/887 (49%), Positives = 600/887 (67%), Gaps = 21/887 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+          + YVK 
Sbjct: 18  GYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASKLGNFVAGRPYVKS 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDALAR+ Q WS+R+ L++GQGNFGS D DPPA+ RYTE R
Sbjct: 78  AKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNFGSPDPDPPASMRYTEAR 137

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + +  LLDDL KDTVDF  NYDG  QEP VL AR+PN+LVNG GGIAVGMATN+P HN
Sbjct: 138 LARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVNGAGGIAVGMATNVPPHN 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DGC+A ++NP I  + L+E I GPDFPT  +ILG +G K AY TGRGSI++R   
Sbjct: 198 LGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAPLILGTSGAKAAYTTGRGSILMRCRH 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   GDRE IV T IPYQV +A ++EKIAE  ++KRI  I+D+RDES+R G R+VI+L
Sbjct: 258 EIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGISDIRDESNRDGTRIVIDL 317

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A+V+LNQ++R+T  QS F  NM+A+ G +PE   L   ++AF++FREEV+ RRTK
Sbjct: 318 KRDATAEVVLNQIWRHTPAQSGFPANMLAIRGGRPETLMLRDFIQAFISFREEVITRRTK 377

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKAR+RAH+L+GL +AV+NLDEVV IIR +PNP TAR  L+ + W   DI   I L+
Sbjct: 378 FELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARERLLTKEWPIGDIAQYIRLV 437

Query: 435 DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +    +   +G  Y LS  Q +AIL+LRL RLT LGRD+I +EL  L  +I+E L IL+ 
Sbjct: 438 EAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDELKELAEKIEEFLAILAD 497

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R +L  ++++EL  ++    TPR + I      ++DED I R+DMVVTV+  GY+KR PL
Sbjct: 498 RVKLYEVMREELEEIRATYATPRISEIAPAWDGLDDEDLIERDDMVVTVTLDGYIKRTPL 557

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S +RAQ RGGKGR+G+  +DED + ++F+ STH  VLFFS+ G VY+ KVW+LP G P  
Sbjct: 558 STFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVLFFSTAGKVYRLKVWKLPEGGPTT 617

Query: 614 RGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           RG+ +IN+L +L+  E I T++P PEDE  W  L VVFAT  GNVRRN +  F  I  +G
Sbjct: 618 RGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVVFATAKGNVRRNSMDAFTNIPSNG 677

Query: 673 KIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K AMK D  S D ++ V      +D++L +K G+ +RF    +R F  R S GVRG+ LA
Sbjct: 678 KFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIRFAAEDVREFTSRTSTGVRGMKLA 737

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V+S++ +       +ER  Y+K                   K +   + +++ ER 
Sbjct: 738 DGDEVVSLSTLGATGTTPEEREQYIK---------------FAPWKGEKEGDPDLTPERY 782

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             LK KEQFILTV   G+GK +SSY++R + R G+G+   ++  I+  G++VA F V   
Sbjct: 783 DALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGV--VNIDNIDRNGSVVASFVVQTG 840

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +Q++LV+D+  LIR+ +  +R+  R T GV +F+  K+E VVS  +I
Sbjct: 841 EQLMLVTDQAKLIRIGLESLRVMGRNTAGVRLFTVGKNEHVVSAVKI 887


>gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
 gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
          Length = 848

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/888 (46%), Positives = 619/888 (69%), Gaps = 46/888 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K + + +I+DEM++SYL+YA++VI+ RA+PD RDGLKPVHRRI++ M + G +W+K++ K
Sbjct: 4   KNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQFRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+   L+EGQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYTET 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K + FL+ D+ K+TV+F+ NYD +  EPVVL A++PN+LVNG GGIAVGMATNIP H
Sbjct: 124 KLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG +A +DN  I +  +M+ I GPDFPTG +ILG+  IKN Y  GRGSI IRG 
Sbjct: 184 NLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIILGKNEIKNGYEKGRGSIKIRGE 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+ S DR+ I++  +PYQVNK  ++EKIA L+R+K++  IADLRDES+++G R+VIE
Sbjct: 244 IEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIVIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++G + ++I+NQLY+++ L+S F  N +A+N  KPE   L   ++ FV+FRE+ +++RT
Sbjct: 304 LRKGVNQEIIINQLYKFSPLESSFGFNTLAINEKKPELLNLKQFIEIFVSFREKTIIKRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA+DR+H+L+GL IA+ N+DE++ IIR S  P  A+  L++++WN    K   ++
Sbjct: 364 LFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSKLNKNI 423

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           ++ +     SD   Y LS+ Q +AIL+LRL +LT +G D+I NEL+ L   I +   IL+
Sbjct: 424 LNINEL---SDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKILN 480

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            ++ L+ +IK EL+ +K++  TPR+T+IV+ +  +E ED I +E ++VTV++ GY+KR P
Sbjct: 481 DKTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKRTP 540

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           ++  +AQ+RGG+G+ G+V R+EDFVT LF V+T T VLFFS+ G VYK K W++P GS Q
Sbjct: 541 ITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEGSNQ 600

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++GK+L N+L ++    +++IMP PE+E+ W++L +VF TK G +R+N L DF  I  +G
Sbjct: 601 SKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNLEDFKNIQSNG 660

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAMKLD  DEI+SV+      D+++ +  G+ +R     IR+F GR+S GV+G++L   
Sbjct: 661 KIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSKGVKGMNLKNN 720

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS++I+                      +IS D +E+ S                  
Sbjct: 721 DRVISLSIL-------------------NPNIISSDKDEMKS------------------ 743

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              KE+FILT++E G+GKR+S+Y+FR + R G+GI   ++S     G + A FP+  +D 
Sbjct: 744 ---KEEFILTITENGYGKRSSAYEFRETGRGGQGI--INISTTERNGNVAASFPIKSDDD 798

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           I+LV+ KG +IRV VNEIR+A R T+GV IF T+ DE+VV+  R+ ++
Sbjct: 799 IMLVTSKGQMIRVKVNEIRVAGRNTQGVRIFKTSSDEKVVTAVRLADN 846


>gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 877

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/881 (47%), Positives = 607/881 (68%), Gaps = 16/881 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I   ++TDEM+ SYL+YA++VI+ RA+PD RDGLKPVHRRI+F M + G +W+K++ 
Sbjct: 3   DKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L L++GQGNFGS+DGD  AA RYTE
Sbjct: 63  KSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A FL+ D+ K+TVDF+ NYD +  EPVVL A+YPN+LVNG  GIAVGMATNIP 
Sbjct: 123 TRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV++G +  IDN +I +  LM++I GPDFPTG +I+G+  I   Y  GRGSI IRG
Sbjct: 183 HNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIIIGQNDIIPGYEKGRGSIKIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E+ S D++ IV+  +PYQVNK  ++EKIAEL+R+K+I  I+DLRDES++ G R+ I
Sbjct: 243 EIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            +K+  S  +I+NQLY+++ LQ+ F  N +A+N  KPE   L   +K FV FRE+V+ +R
Sbjct: 303 TVKKNVSEAIIINQLYKFSPLQTSFGFNTLAINEKKPELLNLKQFIKIFVDFREKVLTKR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+DR H+L+GL I++ N+DEV+ IIR S +P  A+  L+++ W+    K   D
Sbjct: 363 TLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSKIDKD 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           +++ +   + +     LS+ Q +AILELRL +LT +G ++I +EL  L   I +   IL+
Sbjct: 423 VLEVNE--LSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKILN 480

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +  L  +IK EL  +K +   PRRT++V  + +++ ED I  E ++VTV++ GY+KR P
Sbjct: 481 DKKELQNLIKTELAEIKKKFAVPRRTKLVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTP 540

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  RAQ+RGGKG++G+V R+EDFV+ LF VST T VLFFSS G VY+ K W++P GS  
Sbjct: 541 LTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNT 600

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++GKAL NI  +    +I++I+P P D+S+W + +++F T +G +R+N + DF  I  +G
Sbjct: 601 SKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSILDFENIQANG 660

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAMKL+  D+I+SV+   + +D++L T  G+ +R   S IR+F GR+S G++GI+L   
Sbjct: 661 KIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNN 720

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS+ ++ H     +E   Y+K                  L+N       IS ++ +E
Sbjct: 721 DKVISLTVLNHVTTTSEETKAYIKRTRKD------------DLENTDDTNFEISTKKYEE 768

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           LKL+E+FILT++E G+GKR+SSY+FR S R G+GI     S+ N  G + A + V ++D 
Sbjct: 769 LKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERN--GNIAASYSVKNDDD 826

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           I+L+++KG +IR  V++IRI  R T+GV IF   K+E+VVS
Sbjct: 827 IMLITNKGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVS 867



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 4/104 (3%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLG 703
           +++  T++G  +R+   +F +  R G+  + + S +    I +  +   ++DI+L T  G
Sbjct: 775 FILTITENGYGKRSSSYEFRESGRGGQGIINIISSERNGNIAASYSVKNDDDIMLITNKG 834

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           Q +R  +S IR+  GRN+ GVR   + K ++V+S   +  + AD
Sbjct: 835 QMIRCAVSDIRI-TGRNTQGVRIFKVEKNEKVVSSVCLTDSVAD 877


>gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 849

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/887 (46%), Positives = 601/887 (67%), Gaps = 51/887 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M + G +W+K++
Sbjct: 8   KDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQF 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+DGDP AA RYT
Sbjct: 68  RKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG GGIAVGMAT+IP
Sbjct: 128 ETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG +A+I+N DI +  LM+ I GPDFPTG VI+G+  IK  Y  GRGS  IR
Sbjct: 188 PHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E     RE++V+T +PYQVNK+ + E+IA+LVREK+I  I D+RDES+R+G RV 
Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+L+ G   + I   LY+ TS++S F  N +A+   KP+   L   L  F+ FRE+VV++
Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICNLKEFLTNFLTFREDVVIK 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +TK+ L KA DRAH+L+GL+++V NLD++++IIR S  P+ A++ L+   W  +    LI
Sbjct: 368 KTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLI 427

Query: 432 DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            L++D       +  +Y LS+ Q  AILELRL +LT LG ++I  E+  L   IK    I
Sbjct: 428 SLVEDK-----KEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKI 482

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++S+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I +E +++TV+  GY+KR
Sbjct: 483 INSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVTLQGYIKR 542

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS  + Q+RGGKG+SG+  RDED V     V+THTSVLFFS+ G VYK K W++P GS
Sbjct: 543 GALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGS 602

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK+L NIL L   + I++IMPFP++ES   NL +VFAT  G VR+N L DF  IN 
Sbjct: 603 TTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINS 662

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+KLD  D+I+ VE C  + D++L+TK G+C+RF    +R+F GR+S G++GI L+
Sbjct: 663 AGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELS 722

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+++S++I                           + E+I   K D+  +G       
Sbjct: 723 PNDEIVSLSIT--------------------------NKEKI---KKDTKSDG------- 746

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  +F+L+++E G+GK+T + ++R++NR GKGI     S  N  G++ + FPV + 
Sbjct: 747 -------RFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GSICSSFPVIEG 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D +++ ++KG +IRV V EIR A R T+GV I   + DE+VVS  +I
Sbjct: 798 DDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKI 844


>gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 849

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/887 (46%), Positives = 601/887 (67%), Gaps = 51/887 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M + G +W+K++
Sbjct: 8   KDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQF 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+DGDP AA RYT
Sbjct: 68  RKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG GGIAVGMAT+IP
Sbjct: 128 ETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG +A+I+N DI +  LM+ I GPDFPTG VI+G+  IK  Y  GRGS  IR
Sbjct: 188 PHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E     RE++V+T +PYQVNK+ + E+IA+LVREK+I  I D+RDES+R+G RV 
Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+L+ G   + I   LY+ TS++S F  N +A+   KP+   L   L  F+ FRE+VV++
Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTNFLTFREDVVIK 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +TK+ L KA DRAH+L+GL+++V NLD++++IIR S  P+ A++ L+   W  +    LI
Sbjct: 368 KTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLI 427

Query: 432 DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            L++D       +  +Y LS+ Q  AILELRL +LT LG ++I  E+  L   IK    I
Sbjct: 428 SLVEDK-----KEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKI 482

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++S+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I +E +++TV+  GY+KR
Sbjct: 483 INSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVTLQGYIKR 542

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS  + Q+RGGKG+SG+  RDED V     V+THTSVLFFS+ G VYK K W++P GS
Sbjct: 543 GALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGS 602

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK+L NIL L   + I++IMPFP++ES   NL +VFAT  G VR+N L DF  IN 
Sbjct: 603 TTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINS 662

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+KLD  D+I+ VE C  + D++L+TK G+C+RF    +R+F GR+S G++GI L+
Sbjct: 663 AGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELS 722

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+++S++I                           + E+I   K D+  +G       
Sbjct: 723 PNDEIVSLSIT--------------------------NKEKI---KKDTKSDG------- 746

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  +F+L+++E G+GK+T + ++R++NR GKGI     S  N  G++ + FPV + 
Sbjct: 747 -------RFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GSICSSFPVIEG 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D +++ ++KG +IRV V EIR A R T+GV I   + DE+VVS  +I
Sbjct: 798 DDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKI 844


>gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 764

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/720 (56%), Positives = 524/720 (72%), Gaps = 4/720 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+  +K Y K A+ 
Sbjct: 25  SVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKS 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD  AA RYTE RL K
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+  DL K+TV+F  NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 VASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D C A+I+NPD+  + L+E I GPDFPTG ++LGR G + AY  GRGS+++R  + +E
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLGRAGARKAYLEGRGSVIMRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I++ EI YQVNKA+M+EKIAE VREK+I  IA ++DESDR G RVVIELKR 
Sbjct: 265 EIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKIEGIAHVQDESDRNGVRVVIELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V++NQLYR+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT +LL
Sbjct: 325 ATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAFLL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+H+L GLA+AV N+DEVV  IR S +   AR +LM R W A  I   I LIDD 
Sbjct: 385 RKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAESILPYIALIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R+
Sbjct: 445 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  VKD+   PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +R
Sbjct: 505 MSIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP GS  ++GKA
Sbjct: 565 SQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE+ W++L VVFAT  G VRRNKLSDF  + R+GKIAMK
Sbjct: 625 IVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684

Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +   +   +++    + ++D++L T  G+ +RFP + +RVF  R SVGVRGI L  GD+
Sbjct: 685 FEDDHAETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKL-NGDE 743



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 15/138 (10%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVS 804
           Y++ + ++ R++S  ++E+  +K+  +V          G++ +E   +L  +E  ++TV+
Sbjct: 494 YLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDE---DLIAREDMVVTVT 550

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+ KRT   DFR   R GKG+      +  E   +  +F  N + Q++  +  G + +
Sbjct: 551 SGGYIKRTPLVDFRSQRRGGKGVSGM---QTKEEDVVTTLFVANTHTQLLFFTTDGMVYK 607

Query: 865 VPVNEIRIASRATKGVVI 882
           +    +   SR +KG  I
Sbjct: 608 LKTWRLPQGSRTSKGKAI 625


>gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 859

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/886 (46%), Positives = 602/886 (67%), Gaps = 39/886 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +W+K++
Sbjct: 8   KDNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQF 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+DGDP AA RYT
Sbjct: 68  RKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K + +L+DD+ K+T+ F+ NYD + +EP VL A+YPN+LVNG GGIAVGMAT+IP
Sbjct: 128 ETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++G +A+IDN DI +  LM+ + GPDFPTG VI+G+  IK+ Y  GRGS  IR
Sbjct: 188 PHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHGYNNGRGSFKIR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E     RE++V+T IPYQVNK+ + E+IA+LVREK+I  I D+RDES+R+G RV 
Sbjct: 248 GEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+L+ G   + I  QLY+ T ++S F  N +A+   KP+  TL   L  F++FRE++V++
Sbjct: 308 IDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSNFLSFREDIVIK 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +TK+ L KA +RAH+L+GL+++V NLD++++IIR S  PE A++ +++  W  +  + LI
Sbjct: 368 KTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLI 427

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            L++         G   LSE Q  AILELRL +LT LG ++I  E+  L   I     I+
Sbjct: 428 SLVEGKK----GKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKII 483

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SS+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I ++ +++TV+  GY+KR 
Sbjct: 484 SSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVTLQGYIKRG 543

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L   + Q+RGGKG+SG+  RD+D V     V+THTSVLFFS+ G VYK K W++P GS 
Sbjct: 544 SLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEGSS 603

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++GK+L NIL L   + I++IMP PE+E+   N  ++FAT  G VR+N L DF  IN S
Sbjct: 604 SSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSINAS 663

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAMKLD+ D+I+ V+ C  + DI+L+TK G+C+RF    +RVF GR+S G++GI LA 
Sbjct: 664 GKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRSSKGIKGIELAP 723

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQ++S++++   D D                      +     K+D S           
Sbjct: 724 NDQIVSLSVI---DNDK-------------------TKKNGKKSKDDKS----------- 750

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+K KE+F+L++SE G+GK+TS  D+R++NR GKGI     S  N  G + + FPV + D
Sbjct: 751 EIKAKEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRN--GNITSSFPVFEGD 808

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +I++ ++KG +IRV V EIR A R T+GV I   + +E+VVS  +I
Sbjct: 809 EILISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKI 854


>gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
          Length = 885

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/896 (48%), Positives = 593/896 (66%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 8   ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE I+V EIPYQVNKA ++EKIAE V+EK+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE+A+REL+ R W    + +++    
Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEMLAATG 427

Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DL  D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GELLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P+S Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP  S  +RG+ ++NIL LN+ ERIT I+P   + ED+      +VV AT  G V++  
Sbjct: 605 QLPQASRGSRGRPIVNILPLNENERITAILPVTAYEEDK------FVVMATAGGIVKKIA 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR +
Sbjct: 659 LTEFSRPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAM-GRLA 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA           L  D + DE               +G+ EE++    + ++
Sbjct: 718 TGVRGIKLA-----------LTNDLNDDES--------------AGEIEEVSDDNTEETL 752

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           + NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +
Sbjct: 753 DLNIDKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKV 810

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA   V D DQI+L++D GTL+R  V+E+ I  R T+GV +  T+++E VVS+ERI
Sbjct: 811 VAATQVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSENEHVVSLERI 866


>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 885

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/893 (48%), Positives = 586/893 (65%), Gaps = 45/893 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 8   ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE I+V EIPYQVNKA ++EKIAE V+EK+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+R H+L GLAIA+AN+D ++ +IR +PNPETA+REL+ R W    + D++    
Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLAAAG 427

Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DL  D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GELLHILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ ++NIL L + ERIT I+P    E    + +V+ AT  G V++  L++
Sbjct: 605 QLPQASRGSRGRPIVNILPLGENERITAILPVTAYEE---DKFVIMATAGGVVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAM-GRLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D   DE    ++ +S        + EE   L  D  V   
Sbjct: 721 RGIKLA-----------LTNDLSDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + +   +        ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 764 VPKNNGE--------ILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D DQI+L++D GTL+R  V+E+ I  R T+GV +  T++DE VVS+ERI
Sbjct: 814 TQVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSEDEHVVSLERI 866


>gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 887

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/904 (48%), Positives = 591/904 (65%), Gaps = 48/904 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 8   ITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE I+V EIPYQVNKA ++EKIAE V++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ R W    + D++    
Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADMLAASG 427

Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DL  D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++
Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMATAGGIVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D   DE    ++ +S        + EE   L  D  V   
Sbjct: 721 RGIKLA-----------LTNDLSDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +   +        ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 764 IPKNNGE--------ILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +NDQI+L++D GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E   VD
Sbjct: 814 AQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICE---VD 870

Query: 905 EAES 908
           + ES
Sbjct: 871 DEES 874


>gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
 gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
          Length = 869

 Score =  800 bits (2067), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/897 (46%), Positives = 609/897 (67%), Gaps = 39/897 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++   WNK Y K A
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  + FLLDDL +++VDFR NYD S  EPVVL A++PN+LVNG  G+AVGMATN+PTHNL
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C   ++N ++  D L+++I+GPDFPTG +I+G  GIK ++ TG+GSI+IR  +H
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFETGKGSIIIRSKTH 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+T   R+ I+V E+PYQVNKA ++E IA LV+EKR+  I+DLRDES+++G RVVIELK
Sbjct: 244 FEETE-TRKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGAS +V+LNQL++ T LQ+ +S NM+ L+  +P   +L  IL AF+A R+EV+ RRT++
Sbjct: 303 RGASFEVVLNQLFQMTQLQTSYSTNMMLLDNMRPTLMSLRDILAAFIAHRKEVISRRTEF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR++A+VLV L +A+ N+DEVVRI++ S + ETA + L  + W    I + ++L+ 
Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWT---IDEELELLV 419

Query: 436 DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           ++   I      Y LS  Q++AILE+++ R+T   +  +  E+++    +KEC  IL S 
Sbjct: 420 ETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSE 479

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553
           + L  +I QEL  +K +    R++ I++ +  +  +ED I RE +VVT ++ GY+KRV +
Sbjct: 480 AVLTNVIVQELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVQI 539

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR QRRGGKGR    ++ ED +  +F++STH  +LFFSS G VYK K ++LPIG PQ+
Sbjct: 540 SNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIGEPQS 599

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+AL+NI  L   E IT+I+P     S   NL  +F T  G V+RN +SDF  +  +GK
Sbjct: 600 RGRALVNIFDLADDESITSILPL--KSSDAENL--IFLTAQGKVKRNSMSDFAYVPANGK 655

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+KL+  D ++SV+T   E+ I ++T+ G+C+RF +  +RV   R+S GV+ I+L K D
Sbjct: 656 VAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITLGKDD 715

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             IS++I+       +++  YMK    +R            ++N  + E           
Sbjct: 716 SAISLSILNRRILSPEDKAEYMKTKFFER------------IQNPENHE----------- 752

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQF+LTV+E G+GK TSSY++RI+NR G GI     S+ N  G +V+ F V  ++ I
Sbjct: 753 ---EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNHI 807

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +LV+++G +IR+  + I +  R T+GV +FS   +ERV SV  + E E  D++E+TE
Sbjct: 808 MLVTNRGQVIRIEASNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/908 (46%), Positives = 585/908 (64%), Gaps = 70/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLER 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   D  +   G  D   YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L+ Y AQRRGGKG++   M+DEDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVKEYEA---DKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+     NDI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ IV H D D                                      
Sbjct: 722 GIKLAESDNVVSL-IVPHNDGD-------------------------------------- 742

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G++V   
Sbjct: 743 --------------VLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERN--GSVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EI 902
            V + D+ +++++ GTL+R  V E+    R T+GV +  T +DE+VV ++RI E    +I
Sbjct: 787 QVLEGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTTEDEKVVGLQRIDEPDEDDI 846

Query: 903 VDEAESTE 910
           +++AE TE
Sbjct: 847 IEDAEITE 854


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/903 (46%), Positives = 582/903 (64%), Gaps = 69/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      ++ Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEAQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK +INIL L +GERIT I+P   DE S    ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIINILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V + D++++++D GTL+R  V+E+    R T+GV +  TA+DE VV ++RI E E VD
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVD 845

Query: 905 EAE 907
             E
Sbjct: 846 LPE 848


>gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 869

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/897 (45%), Positives = 606/897 (67%), Gaps = 39/897 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++   WNK Y K A
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  + FLLDDL +++VDFR NYD S  EPVVL A++PN+LVNG  G+AVGMATN+PTHNL
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C   ++N ++  D L+++I+GPDFPTG +I+G  GIK ++ +GRGSI+IR  +H
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTH 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+T   +  I+V E+PYQVNKA ++E IA LV+EKR+  I+DLRDES+++G RVVIELK
Sbjct: 244 FEETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGAS +V+LNQL++ T LQ+ +S NMV L+  +P   +L  IL AF+A R+EV+ RRT++
Sbjct: 303 RGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTEF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR++A+VLV L +A+ N+DEVV I++ S + E A + L  + W    I + ++L+ 
Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHW---AIDEELELLV 419

Query: 436 DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           ++   I      Y LS  Q++AILE+++ R+T   +  +  E+++    +KEC  IL S 
Sbjct: 420 ETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSE 479

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553
           + L  +I +EL  +K +    R++ I++ +  +  +ED I RE +VVT ++ GY+KRV +
Sbjct: 480 AVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVHI 539

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR QRRGGKGR    ++ ED +  +F++STH  +LFFSS G VYK K ++LPIG PQ+
Sbjct: 540 SNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQS 599

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+AL+NI  L   E IT+I+P     S   NL  +F T  G V+RN +SDF  +  +GK
Sbjct: 600 RGRALVNIFDLADDESITSILPL--KSSDAENL--IFLTAQGKVKRNSMSDFAYVPANGK 655

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A++L+  D ++SV+T   E+ + ++T+ G+C+RF +  +RV   R+S GV+ I+L K D
Sbjct: 656 VAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDD 715

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             IS++I+       +++  YMK    +R            ++N  + E           
Sbjct: 716 NAISLSILNKQVLSPEDKAEYMKTKFFER------------IQNPENHE----------- 752

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQF+LTV+E G+GK TSSY++RI+NR G GI     S+ N  G +V+ F V  ++ I
Sbjct: 753 ---EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNHI 807

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +LV+++G +IR+  N I +  R T+GV +FS   +ERV SV  + E E  D++E+TE
Sbjct: 808 MLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863


>gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans]
          Length = 887

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/904 (47%), Positives = 589/904 (65%), Gaps = 48/904 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 8   ITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE I+V EIPYQVNKA ++EKIA+ V++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+   W    + D++    
Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAASG 427

Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DL  D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV  T  G V++  L++
Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMTTAGGIVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D + DE    ++ +S        + EE   L  D  V   
Sbjct: 721 RGIKLA-----------LTNDLNDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +   +        IL  ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 764 IPKNNGE--------ILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +NDQI+L++D GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E   VD
Sbjct: 814 AQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICE---VD 870

Query: 905 EAES 908
           + ES
Sbjct: 871 DEES 874


>gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 887

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/904 (47%), Positives = 590/904 (65%), Gaps = 48/904 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 8   ITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE I+V EIPYQVNKA ++EKIA+ V++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q    +N+VAL+  +P+   L  +++AFV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYALTQMQVTLGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+   W    + D++    
Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAASG 427

Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DL  D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++
Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMATAGGIVKKITLTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D + DE    ++ +S        + EE   L  D  V   
Sbjct: 721 RGIKLA-----------LTNDLNDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +   +        ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 764 IPKNNGE--------ILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +NDQI+L+++ GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E   VD
Sbjct: 814 AQVEENDQIMLITNAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICE---VD 870

Query: 905 EAES 908
           + ES
Sbjct: 871 DEES 874


>gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20]
 gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 896

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/914 (47%), Positives = 586/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D                     +++  A    +S DT+ + SL        
Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEADESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  ESTE
Sbjct: 878 DENSEALDNVESTE 891


>gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
 gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
          Length = 895

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/913 (47%), Positives = 592/913 (64%), Gaps = 44/913 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRSHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L +V+TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  +        + ++   D  I  +++  A    +S DT+ + SL        
Sbjct: 724 VRGIKLATTE--------ISSEEIEDAEIVEIENEEADESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V   DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEKADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEHDED 877

Query: 900 --SEIVDEAESTE 910
             SE +D  ESTE
Sbjct: 878 ENSEALDNVESTE 890


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/908 (46%), Positives = 587/908 (64%), Gaps = 71/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIVDAYKTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ ++R +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      ++ + I  D   YL+E Q +AIL+LRL +LTGL  + I  E  +L  EI
Sbjct: 426 AGTDAARPEWLEAQFGI-RDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + ILSS  RL+ +I++EL  VK++    RRT I     D++ ED I +ED+VVT+SH
Sbjct: 485 AELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLITQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + +V  AT  G V++  L+D
Sbjct: 605 QLPLASRTARGKPIVNILPLEENERITAILPVREYEA---DKFVFMATADGTVKKTPLTD 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   D ++ V+    +NDI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FSRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D+V+S+ IV H + D                                     
Sbjct: 721 RGIKLAESDKVVSL-IVPHNEGD------------------------------------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G++V  
Sbjct: 743 ---------------VLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERN--GSVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEI 902
               D D+ +++++ GTL+R  V E+    R T+GV +  TA+DE+VV ++RI   E E+
Sbjct: 786 VQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEDEQVVGLQRIDEPEEEL 845

Query: 903 VDEAESTE 910
           +++AE  E
Sbjct: 846 IEDAELVE 853


>gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
 gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
          Length = 900

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/910 (47%), Positives = 595/910 (65%), Gaps = 42/910 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +    +NK +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  + ++ LM  I GPDFPTGA+I GR GI++AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAIINGRKGIEDAYCTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +EKT  +REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R+W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D +  +G  +G  +LSE Q RAILELRL RLTGL  + I +E   L  EI 
Sbjct: 426 AGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILNSAERLMQVIREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P+ E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFSTDK-FIFMATASGIVKKVCLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  SG I +KL   DE++ V+     ++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 AFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVRSM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSS 780
           VRGI LA  D       +L  D +  E +   +  +     ++ + + + SL   + D +
Sbjct: 724 VRGIKLATSD-------ILADDIEDTEIVEIEQEETEDNTAVNLNIDRVVSLVIPRADIA 776

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G+               ILTV+E G+GKRT   ++ I +R+ KG+ +  V++ N  G 
Sbjct: 777 TSGD---------------ILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERN--GK 819

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V++ DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E 
Sbjct: 820 VVAAVQVDELDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEKVVSLERLCEP 879

Query: 901 EIVDEAESTE 910
           E   E ES E
Sbjct: 880 E---EDESNE 886


>gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 896

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/914 (47%), Positives = 585/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D                     +++  A    +S DT+ + SL        
Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEADESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
               E +D  ESTE
Sbjct: 878 DENGEALDNVESTE 891


>gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 896

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/914 (47%), Positives = 587/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D                     +++  A+   +S DT+ + SL        
Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  ESTE
Sbjct: 878 DENSEALDNVESTE 891


>gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305]
 gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305]
          Length = 885

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/896 (47%), Positives = 589/896 (65%), Gaps = 42/896 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A A+V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  +LSE Q RAILELRL RLTGL  + I +E  +L +EI 
Sbjct: 426 AGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILTSPERLMEVIREELERVKSEFGDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  + +R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  +          +D   D  I  +++          DTEE +S+        
Sbjct: 724 VRGIKLATTEI---------SDEVEDVEIETVENE---------DTEETSSV-------- 757

Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           N++ ++   L +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA DE VVS+ERI
Sbjct: 816 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871


>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
          Length = 874

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/909 (46%), Positives = 587/909 (64%), Gaps = 71/909 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE +    +E I+VTEIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RR
Sbjct: 306 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    D  +   G  D   YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 486 AELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L+ Y AQRRGGKG++   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 546 EGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + +V  AT  G V++  L+D
Sbjct: 606 QLPLASRTARGKPIVNILPLEENERITAILPVKEYEA---DKFVFMATADGTVKKTPLTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L + D ++ V+     NDI+L +K G+ VRF    +R   GR + GV
Sbjct: 663 FSRPRSAGIIAVNLRNEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM-GRTAAGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D V+S+ IV H D D                                     
Sbjct: 722 RGIKLAESDNVVSL-IVPHNDGD------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G++V  
Sbjct: 744 ---------------VLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901
             V + D+ +++++ GTL+R  V E+    R T+GV +  T ++E+VV ++RI E    +
Sbjct: 787 VQVLEGDEFMMITNGGTLVRTRVREVSRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDEDD 846

Query: 902 IVDEAESTE 910
           I+++AE TE
Sbjct: 847 IIEDAEITE 855


>gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 896

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/914 (47%), Positives = 587/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D                     +++  A+   +S DT+ + SL        
Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  ESTE
Sbjct: 878 DENSEALDNVESTE 891


>gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
 gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
          Length = 888

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/898 (47%), Positives = 588/898 (65%), Gaps = 37/898 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   +K YVK
Sbjct: 6   KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +R  
Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV RRT
Sbjct: 306 IKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R W+  ++  +++ 
Sbjct: 366 VFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D +   G  DG  YLSEVQ RAILELRL RLTGL  + I +E   L +EI 
Sbjct: 426 AGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLVEIS 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  +K E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L +GE  RIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  +A+R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  +  +        DA+  +        + +   ++  T+++ SL        
Sbjct: 724 VRGIKLATTEISVD-------DAEEVDIETVENEEAEEASSVNLTTDKVVSLV------- 769

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 770 ---------IPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKVVA 818

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA+DE VVS+ERI E E
Sbjct: 819 AVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876


>gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
 gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
          Length = 888

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/898 (47%), Positives = 588/898 (65%), Gaps = 37/898 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   +K YVK
Sbjct: 6   KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +R  
Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV RRT
Sbjct: 306 IKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R W+  ++  +++ 
Sbjct: 366 VFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D +   G  DG  YLSE Q RAILELRL RLTGL  + I +E   L +EI 
Sbjct: 426 AGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLVEIS 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  +K E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L +GE  RIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  +A+R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  +  +        DA+  +        + +   ++  T+++ SL        
Sbjct: 724 VRGIKLATTEISVD-------DAEEVDIETVENEEAEEASSVNLTTDKVVSLV------- 769

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 770 ---------IPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKVVA 818

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA+DE VVS+ERI E E
Sbjct: 819 AVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/893 (46%), Positives = 572/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEEQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL SV++     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK +INIL L +GERIT I+P  E        ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIINILPLEEGERITAILPVSEFSPEK---FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTADDENVVGLQRI 838



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EIT+  +D  +E         EL  +E  ++T+S +G+ K     D+    R GKG  AT
Sbjct: 519 EITAASHDIDME---------ELIAREDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSAT 569

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887
              K+ E   +  +   N +D I+  S +G   R+ V ++ +ASR  +G   + I    +
Sbjct: 570 ---KMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIINILPLEE 626

Query: 888 DERVVSVERIRE 899
            ER+ ++  + E
Sbjct: 627 GERITAILPVSE 638


>gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202]
 gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202]
          Length = 885

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/901 (47%), Positives = 588/901 (65%), Gaps = 52/901 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A A+V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  +LSE Q RAILELRL RLTGL  + I +E  +L +EI 
Sbjct: 426 AGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILTSPERLMEVIREELERVKAEFGDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  + +R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE--EITSLKNDSSV 781
           VRGI LA  +                               IS + E  EI +++N+ + 
Sbjct: 724 VRGIKLATTE-------------------------------ISDEVEDVEIETVENEDAE 752

Query: 782 EG---NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           E    N++ ++   L +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N
Sbjct: 753 ETSSVNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN 812

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA DE VVS+ER
Sbjct: 813 --GKVVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLER 870

Query: 897 I 897
           I
Sbjct: 871 I 871


>gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 896

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/914 (47%), Positives = 587/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D                     +++  A+   +S DT+ + SL        
Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  ESTE
Sbjct: 878 DENSEALDNVESTE 891


>gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 896

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/914 (47%), Positives = 585/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  D   YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M++ DF+  L I +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D                     +++  A+   +S DT+ + SL        
Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  ESTE
Sbjct: 878 DENSEALDNVESTE 891


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/893 (46%), Positives = 573/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L  GERIT I+P   DE S +  ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNILPLEDGERITAILPV--DEFSADK-FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/893 (46%), Positives = 573/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L  GERIT I+P   DE S +  ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNILPLEDGERITAILPV--DEFSADK-FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/893 (46%), Positives = 574/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEDQYGI-RDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARGK ++NIL L +GERIT I+P   DE S    ++  AT  G V++  L+ 
Sbjct: 605 QLPHATRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/893 (46%), Positives = 574/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEDQYGI-RDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARGK ++NIL L +GERIT I+P   DE S    ++  AT  G V++  L+ 
Sbjct: 605 QLPHATRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838


>gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E]
 gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 888

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/904 (47%), Positives = 590/904 (65%), Gaps = 40/904 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G  +NK YVK A
Sbjct: 8   ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNKSYVKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q+    LL DL K+TVDF PNYDG    P VL  + P++LVNG  GIAVGMATNIP HNL
Sbjct: 128 QRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A +DN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R  + 
Sbjct: 188 GEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYVRAKAS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     REQI++TEIPYQVNKA ++EKI ELVR+K+I  IA + D S+++G R+ I++K
Sbjct: 248 VEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIRLEIDIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++AFV  R EVV RRT Y
Sbjct: 308 RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEAFVKHRREVVTRRTVY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434
            L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W+  ++  +++   
Sbjct: 368 ELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAPMLEAAG 427

Query: 435 ------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                 D  +  +G+ DG  +LSE Q RAILELRL RLTGL  + I  E + + ++I E 
Sbjct: 428 VDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEILLQIGEL 487

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + IL+S  RL  +I++EL  VK   +  RRT I     D+  ED I +ED+VVT+SH GY
Sbjct: 488 IRILTSSVRLNEVIREELELVKSTYNDERRTEITAASGDINLEDLIAQEDVVVTLSHEGY 547

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PL+ Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y  KV++LP
Sbjct: 548 VKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSSRGRLYWLKVYQLP 607

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG+ ++NIL L   ERIT I+P     S   + +VV AT  G V++  L++F +
Sbjct: 608 EASRGARGRPIVNILPLEDNERITAILPVA---SYDEDKFVVMATACGIVKKTALTEFSR 664

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI
Sbjct: 665 PRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVRAM-GRTATGVRGI 723

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            LA           L  D   DE                 + EEI+    + +++ NI +
Sbjct: 724 KLA-----------LTNDISDDESAV--------------EIEEISDDNAEDTLDLNIDK 758

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +   E  ILT ++ G+GKRT+  ++   +R+ KG+ +  VS+ N  G +VA   V
Sbjct: 759 VVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERN--GKVVAATQV 816

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EA 906
            + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+ER+ E E  + +A
Sbjct: 817 EETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVAEPEEDEFDA 876

Query: 907 ESTE 910
           ES E
Sbjct: 877 ESPE 880


>gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 896

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/914 (47%), Positives = 586/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M++ DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  +                     +++  A+   +S DT+ + SL        
Sbjct: 724 VRGIKLATTEISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  E+TE
Sbjct: 878 DENSEALDNVENTE 891


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/893 (46%), Positives = 574/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEDQYGI-RDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARGK ++NIL L +GERIT I+P   DE S    ++  AT  G V++  L+ 
Sbjct: 605 QLPHATRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838


>gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 896

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/914 (47%), Positives = 586/914 (64%), Gaps = 45/914 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ +VK
Sbjct: 6   KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +VIE
Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M++ DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR + G
Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  +                     +++  A+   +S DT+ + SL        
Sbjct: 724 VRGIKLATTEISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +VA
Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E    
Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877

Query: 900 ---SEIVDEAESTE 910
              SE +D  E+TE
Sbjct: 878 DENSEALDNVENTE 891


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/894 (45%), Positives = 576/894 (64%), Gaps = 71/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A+I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            + L KARDRAH+L  L++A+AN+DE++ +IR +P P  A+  L+ R W+  ++  ++  
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLER 425

Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                   D ++D  Y I  DG  +L+E Q +AILELRL RLTGL  + I +E  +L  E
Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL+S  RL+ +I++EL +V++     RRT I   + D++ E+ I +ED+VVT+S
Sbjct: 484 IAELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L 
Sbjct: 604 YQLPLASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + G
Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAM-GRTASG 719

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L + DQV+S+ +                                       S EG
Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +               ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V 
Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + D++++++D GTL+R  V E+    R T+GV +  T+ DE VV ++RI
Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTSDDENVVGLQRI 838



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802
           E I  + H +++  RL+    EE+ +++        + +   + +   +EL  +E  ++T
Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ K     D+    R GKG  AT +   + I  L+     N +D I+  S +G  
Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R+ V ++ +ASR  +G   V I    + ER+ ++  + E
Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSE 638


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/893 (46%), Positives = 572/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFP  A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L  GERIT I+P   DE S +  ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNILPLEDGERITAILPV--DEFSADK-FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838


>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
 gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
          Length = 867

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/896 (46%), Positives = 578/896 (64%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR  + 
Sbjct: 188 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ RSW   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y +  +G  +L+E Q +AIL+LRL +LTGL  + +  E   L  +I+
Sbjct: 428 GDDAARPEWLEPQYGV-HEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELLKQIE 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL +++D  + PRRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITENTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +   YV  AT  G V++  L DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTPLQDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+V+S+ I                                         EG+I
Sbjct: 723 GIKLMDNDKVVSLII--------------------------------------PRGEGHI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV+E GFGKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 745 ---------------LTVTENGFGKRTEEAEYPTKSRATQGVISIKVSERN--GHVVGAI 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V D DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E+E
Sbjct: 788 QVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 843


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/895 (46%), Positives = 576/895 (64%), Gaps = 69/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      ++ Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEAQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+S+
Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIAREDVVVTLSN 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 AGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L +GERIT I+P   DE S    ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 840


>gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
 gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
          Length = 898

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/907 (47%), Positives = 586/907 (64%), Gaps = 42/907 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK +VK
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I  E   L  EI 
Sbjct: 426 AGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R   GR + G
Sbjct: 665 AFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L+                              +  +I  D EE    ++ SSV  
Sbjct: 724 VRGIKLST--------------------TEISSEEIEEAEIIETDNEE---AEDSSSV-- 758

Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           ++ ++R   L +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E E
Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876

Query: 902 IVDEAES 908
             DE ES
Sbjct: 877 D-DENES 882


>gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 898

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/907 (47%), Positives = 586/907 (64%), Gaps = 42/907 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK +VK
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I  E   L  EI 
Sbjct: 426 AGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R   GR + G
Sbjct: 665 AFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L+                              +  +I  D EE    ++ SSV  
Sbjct: 724 VRGIKLST--------------------TEISSEEIEEAEIIETDNEE---AEDSSSV-- 758

Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           ++ ++R   L +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E E
Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876

Query: 902 IVDEAES 908
             DE ES
Sbjct: 877 D-DENES 882


>gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z]
 gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z]
          Length = 890

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/894 (47%), Positives = 579/894 (64%), Gaps = 39/894 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT VSI DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   NK YVK A
Sbjct: 8   ITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKAYVKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 QKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A IDN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R  + 
Sbjct: 188 GEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYVRAKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I      REQIVVTEIPYQVNKA ++EKI EL+REK+I  I+ + D S+++G R+ I++K
Sbjct: 248 IVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRLEIDIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV RRT Y
Sbjct: 308 RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPKLFNLKQIIEAFVKHRREVVTRRTVY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434
            L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +++   
Sbjct: 368 ELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPMLEAAG 427

Query: 435 ------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                 DD     G  +G  YLSE Q RAILELRL RLTGL  + I +E   + ++I E 
Sbjct: 428 VDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILVQIGEY 487

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L IL+S  RL  +I++EL  VK   +  RRT I     D+  ED I +ED+VVT+SH GY
Sbjct: 488 LHILTSIERLREVIREELELVKTNFNDARRTEITTASSDINLEDLIAQEDVVVTLSHEGY 547

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PL+ Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y  KV++LP
Sbjct: 548 VKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLP 607

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG+ ++NIL L + ERIT I+P     S   + +V+ AT  G V++  L++F +
Sbjct: 608 EASRGARGRPIVNILPLEENERITAILPVA---SYDEDKFVLMATAGGIVKKTALTEFSR 664

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GVRGI
Sbjct: 665 PRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAM-GRTATGVRGI 723

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            LA           L  D   +E                 + EE++   +  S++ NI +
Sbjct: 724 KLA-----------LTNDLSDEESAV--------------EIEEVSEDNSQESLDLNIDK 758

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V
Sbjct: 759 VVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAATQV 816

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + DQI+L++D GTL+R  V E+ +  R T+GV +  TA+DE+VVS+ER+ E +
Sbjct: 817 EEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAEDEQVVSLERVAEPD 870


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/900 (45%), Positives = 574/900 (63%), Gaps = 69/900 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVVTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQFGI-RDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARGK ++NIL L + ERIT I+P  E        ++  AT  G V++  L  
Sbjct: 605 QLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEK---FIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ LA  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G++V  
Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GSVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E E  D
Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESD 845


>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
 gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
          Length = 890

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/894 (46%), Positives = 573/894 (64%), Gaps = 71/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  ++  
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                   D ++D  Y I  DG  +L+E Q +AILELRL RLTGL  + I +E  +L  E
Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L 
Sbjct: 604 YQLPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  +G IA+ L   D ++ V+     +DI+L +K G+ VRF    +R   GR + G
Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPM-GRTASG 719

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L + DQV+S+ +                                       S EG
Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +               ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V 
Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802
           E I  + H +++  RL+    EE+ ++++       + +   + +   +EL  +E  ++T
Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ K     D+    R GKG  AT +   + I  L+     N +D I+  S +G  
Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R+ V ++  ASR  +G   V I    + ER+ ++  + E
Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSE 638


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/901 (46%), Positives = 582/901 (64%), Gaps = 72/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 NEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAE 247

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +E  + SG RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 248 VEADEKSG-RETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA++N+D ++ +IR +PNP  A+  L+ R W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAMLER 426

Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D++         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 427 AGDNAARPEWLEPQFGI-RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL S  RL+ +I++EL++V+D+    RRT I E   D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L   ERIT I+P  E E      +V  AT  G V++  L+D
Sbjct: 606 QLPEASRGARGRPIINLLPLEANERITAILPVREYEEGR---HVFMATASGTVKKTALTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP S +R   GR + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSM-GRTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+ I                                         EG+
Sbjct: 722 RGINLNGEDRVVSLII--------------------------------------PRGEGD 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I               LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 744 I---------------LTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERN--GNVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVDACDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           E
Sbjct: 847 E 847


>gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
 gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
          Length = 892

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/900 (46%), Positives = 579/900 (64%), Gaps = 76/900 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+V+E
Sbjct: 246 ASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +VILN LY  T LQ+ F +NMVAL+  +P+ F+L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFSLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+ N+DE++ +I+ +P P+ AR EL+ R W   D+  +++ 
Sbjct: 366 IYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLER 425

Query: 434 --ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             +D       +  + I   G  +L+E Q +AILELRL RLTGL  + I  E   L   I
Sbjct: 426 AGVDAARPEWLEPQFGIHG-GQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L IL S  RL+ +I+ EL +VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 485 EELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+    M+DEDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + YV  AT  G V++  L+D
Sbjct: 605 QLPLASRTARGKPIVNILPLEEDERITAILPVREYEA---DKYVFMATADGTVKKTPLTD 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFA 717
           F +   +G IA+ L   D ++ V+     +DI+L +K G+ VRF  SA       +R   
Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM- 720

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG+ LA+GD+V+S+ IV H + D                              
Sbjct: 721 GRTAAGVRGMKLAEGDKVVSL-IVPHNEGD------------------------------ 749

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +LTV+E G+GKRT+  ++   +R+ +G+ +  VS  N 
Sbjct: 750 ----------------------VLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN- 786

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G++V      D D+ +++++ GTL+R  V E+    R T+GV +  TA++E VV ++RI
Sbjct: 787 -GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEEELVVGLQRI 845


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/894 (45%), Positives = 577/894 (64%), Gaps = 73/894 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 14  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 74  RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 AKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  + 
Sbjct: 194 GEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQAD 253

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE  + +G RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+E
Sbjct: 254 IETDEKTG-RETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 312

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RRT
Sbjct: 313 IKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIISAFIRHRREVVTRRT 372

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L  LA+A+AN+D V+ +IR +PNP  A+  L+ + W+   +  +++ 
Sbjct: 373 IYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIAQPWDLGSVSTMLER 432

Query: 434 IDDSS----------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             DS+          Y +  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++
Sbjct: 433 AGDSNVARPEWLEPQYGV-HDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRDLLLQ 491

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++EL ++KD+ + PRRT I E   D+  ED I  E++VVT+S
Sbjct: 492 IAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADINIEDLINEENVVVTLS 551

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 552 HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 611

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L 
Sbjct: 612 YQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGK---FVFMATASGTVKKTPLQ 668

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF    +R   GR + G
Sbjct: 669 DFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKVVRFAEDCVRPM-GRTATG 727

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L+  D+V+S+ I+   D D                                    
Sbjct: 728 VRGMKLSDDDKVVSL-IIPRGDGD------------------------------------ 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ILTV+E G+GKRT+  ++   NR+ +G+ +  VS+ N  G +V 
Sbjct: 751 ----------------ILTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERN--GKVVG 792

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T + E VV ++R+
Sbjct: 793 AIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGELVVGLQRV 846


>gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
 gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
          Length = 907

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/903 (45%), Positives = 581/903 (64%), Gaps = 52/903 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   ILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ++S+R +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL DL KDTVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 SRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNIPPHNM 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--- 252
            E++DGC+A+ID+  + +D LM  I GPDFPTG +I GR GI  AY TGRG I +R    
Sbjct: 188 REIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRARHT 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + H EKT   R+ I+VTE+PYQVNKA ++EKIAELV++KRI  IA+LRDESD++G RVVI
Sbjct: 248 IEHDEKTG--RDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S DV++N L+ +T LQ++F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EVKRGESGDVVVNNLFAHTQLQTVFGINMVALDNGQPKILNLKEILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDR H+L GLA+A++N+DEV+ +I+ SP+   A+ +L+ R+W    + D+++
Sbjct: 366 TLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTDMLE 425

Query: 433 LIDDSS---------YTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
               +S         Y +      Y LS  Q +AILELRL RLTGL  + + +E  S+  
Sbjct: 426 RAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLSILK 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E  +IL+S  RLL +I++EL +++D+    R+T I    LD+  ED I  EDMVVT+
Sbjct: 486 RIAELNEILASPERLLDVIREELQAIRDQYGDERKTEIQASHLDLTIEDLINEEDMVVTI 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY K  PLS Y+AQRRGG+G+S   M+DED +  L + STH +VL FS+ G VY  K
Sbjct: 546 SRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRGKVYWLK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P  S  +RGK LIN+L L++GE I  I+P  E      + Y+ FAT  G V+R  L
Sbjct: 606 VYEMPNASRGSRGKPLINLLPLDEGEAINAILPVRE---YREDSYIFFATAKGTVKRTSL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +    G IA+ L+  D ++     +  +  +L +  G+ +RF    +R   GR + 
Sbjct: 663 EQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAM-GRTAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L  G +VIS+ I                                 SL  D+  +
Sbjct: 722 GVRGMRLQGGAEVISLIIP-------------------------------QSLTIDAETD 750

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +  E   + +   + +ILT SE G+GKRT   +F +  R G+G+ A   S+ N  GALV
Sbjct: 751 DDAEERPVETVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRN--GALV 808

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V D+D+++L++DKGTL+R  V E+ ++SR T+GV +  T + E +V+  R+ E + 
Sbjct: 809 AAIQVRDSDEMMLITDKGTLVRTRVGEVSVSSRNTQGVTLIRTGEGEHLVATVRVDEPDA 868

Query: 903 VDE 905
           V++
Sbjct: 869 VED 871


>gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
 gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
          Length = 890

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/894 (46%), Positives = 573/894 (64%), Gaps = 71/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  ++  
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                   D ++D  Y I  DG  +L+E Q +AILELRL RLTGL  + I +E  +L  E
Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L 
Sbjct: 604 YQLPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  +G IA+ L   D ++ V+     +DI+L +K G+ VRF    +R   GR + G
Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPM-GRTASG 719

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L + DQV+S+ +                                       S EG
Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +               ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V 
Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802
           E I  + H +++  RL+    EE+ ++++       + +   + +   +EL  +E  ++T
Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ K     D+    R GKG  AT +   + I  L+     N +D I+  S +G  
Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R+ V ++  ASR  +G   V I    + ER+ ++  + E
Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSE 638


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/895 (46%), Positives = 569/895 (63%), Gaps = 73/895 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGDPPAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF PNYD S +EP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+A+I+NP+  +  LM  + GPDFPT  +I G  GI+ AY TGRG I +R  
Sbjct: 186 NLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGIINGAAGIREAYLTGRGRIYLRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E   G R+ I+V E+PYQVNKA +LEKIAELV+E ++  I+ LRDESD+ G R+VIE
Sbjct: 246 CQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGMRMVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG + +V+LN LY+ T +QS+F +NMVAL   +P    L  ++ AF+  R EVV RRT
Sbjct: 306 LRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGRPRLMNLRDLIAAFIDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL GLA+A+AN+DEV+ +I+ SP+P  A+  L+ R+W    + +L++ 
Sbjct: 366 LHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVVTELLER 425

Query: 434 ID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            D          D  Y +  +G   LS +Q +AIL+LRL RLTGL +D I  E  +L  +
Sbjct: 426 ADAAEASRPRDLDPVYGL-REGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYRALLEQ 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL+  +RL+ +I+ EL++++++   PRRT I+   LD+  ED I  EDMVVTVS
Sbjct: 485 IADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDMVVTVS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PLS YRAQRRGG+G+     ++ED++  L + +TH ++L FSS G VY  KV
Sbjct: 545 HEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662
           + LP+ S  ARG+  +N+L L +GERI  I+P  E DE+     ++  AT  G V++  L
Sbjct: 605 YELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAH----FIFMATASGTVKKVAL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F +   SGKIA++L   D ++ V     E D++L +  G+ V F  + +R   GR + 
Sbjct: 661 SEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRAM-GRTAA 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG++L +G +VI++ I                                       + E
Sbjct: 720 GVRGMTLQEGRKVIALII---------------------------------------ASE 740

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G +               L ++E G+GKRT   +F    R G+G+ A   S  N  GA+V
Sbjct: 741 GTV---------------LNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSARN--GAVV 783

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               V D D+I+L++D GTL+R  V+EI + SR T+GV +      E+VV ++RI
Sbjct: 784 GAALVEDEDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEKVVGMDRI 838



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L  +E  ++TVS +G+ K     D+R   R G+G +A    + + I  LV     N 
Sbjct: 530 AEDLITEEDMVVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVV---ANT 586

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
           +D I+  S  G +  + V E+ +ASR  +G   V +    + ER+ ++  IRE    DEA
Sbjct: 587 HDTILCFSSSGKVYWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIRE---FDEA 643


>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
 gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
          Length = 895

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/894 (46%), Positives = 574/894 (64%), Gaps = 71/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  ++  
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                   D ++D  Y I  DG  +L+E Q +AILELRL RLTGL  + I +E  +L  E
Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S
Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L 
Sbjct: 604 YQLPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  +G IA+ L   D ++ V+     +DI+L +K G+ VRF    +R   GR + G
Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPM-GRTASG 719

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L + DQV+S+ +                                       S EG
Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +               ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V 
Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802
           E I  + H +++  RL+    EE+ ++++       + +   + +   +EL  +E  ++T
Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ K     D+    R GKG  AT +   + I  L+     N +D I+  S +G  
Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R+ V ++  ASR  +G   V I    + ER+ ++  + E
Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSE 638


>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
 gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
          Length = 885

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/897 (46%), Positives = 575/897 (64%), Gaps = 69/897 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           KGIT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI +D L+  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 252 ANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN L+  T LQ+ F VNMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 312 CKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +I+ +P+P  A++ L+ R W+  ++ D+++ 
Sbjct: 372 IFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADMLER 431

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + I  +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI
Sbjct: 432 AGTDAARPDWLEPEFGI-REGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 490

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ II+ EL++V+D     RRT I   + D++ ED I +ED+VVT+S 
Sbjct: 491 AELMHILASTERLMEIIRDELITVRDTYGDERRTEIGAAIHDIDIEDLITQEDVVVTLSR 550

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L  Y AQRRGGKG+S   M+D D++  L + +TH ++L FS+ G  Y  KV+
Sbjct: 551 EGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFSTRGKAYSLKVF 610

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  
Sbjct: 611 QLPQASRTARGKPIVNILPLEEGERITAILPVSE---YSEDKFIFMATGDGTVKKTSLDQ 667

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +G IA+ L   D ++ V+  T  N+I+L +K G+ VRF    +R   GR + GV
Sbjct: 668 FAKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVRFSEEHVRGM-GRTASGV 726

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L   DQV+S+ +                                       S EG+
Sbjct: 727 RGMKLTGEDQVVSLIV--------------------------------------PSNEGD 748

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV+E G+GKRT   ++   +R+ +G+ +  VS  N  G++V  
Sbjct: 749 ---------------ILTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRN--GSVVGA 791

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               D D+ ++++D GTL+R  V+E+    R T+GV +  TA+DE VV ++RI E E
Sbjct: 792 VQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEPE 848


>gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
 gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
          Length = 877

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/894 (46%), Positives = 565/894 (63%), Gaps = 71/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD S  EP VL  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+  C+A+ID PD+ +  LM  I GPDFPT A+I G +GI NAY TGRG I +R  
Sbjct: 186 NLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAAIINGASGIYNAYTTGRGKIYLRAR 245

Query: 254 SHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            H E   GD  R+ I+ TE+PYQVNKA +LEKIAELV+E ++  I+ LRDESD+ G R+V
Sbjct: 246 CHFEDI-GDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T  Q++F +NMVAL   +P    L  I+ AF+  R E+V R
Sbjct: 305 IELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLDGRPHCMNLREIISAFINHRREIVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+RAH+L GLAIA+AN+DE++ +I+ +  P  A+  L++++W+A  +  L+
Sbjct: 365 RTIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALL 424

Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           D         DD     G    +Y LSE Q +AILELRL RLTGL +D I NE   L  +
Sbjct: 425 DRADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQ 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ II++EL+++K++    RRT I++   D+ DED I  EDMVVT+S
Sbjct: 485 IDEYLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PLS Y+AQRRGG+G+S    ++ D+V  L + +TH ++L FSS G VY  KV
Sbjct: 545 HEGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK  +N+L L +GE+I  I+P  E   S    ++  AT  G V++  L 
Sbjct: 605 YQLPVASRAARGKPFVNLLPLEEGEKINAILPIREFTDSK---FIFMATTAGTVKKTPLK 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F     +GKIA+ L   D ++ V     + ++LL +  G+ V F  + +R   GR + G
Sbjct: 662 EFENQRANGKIAIDLREDDTLVGVAVTDGQQNVLLFSSTGKAVCFNEADVRSM-GRTASG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L +G +VIS+ I                                       + EG
Sbjct: 721 VRGIRLQEGQKVISLII---------------------------------------ATEG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L ++E G+GKRT   +F    R G+G+ A   S  N  GA+V 
Sbjct: 742 T---------------VLNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARN--GAVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              VNDND+I+L++D GTL+R PV+ I +  R T+GV I    K+E+V+ V+RI
Sbjct: 785 AVLVNDNDEIMLITDGGTLVRTPVDGISVVGRNTQGVTIIKLGKNEKVIGVDRI 838



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 12/155 (7%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVE------GNISEERCQELKLKEQFILTVSEKG 807
           Y+  + +  RL+    EE+ ++K   S E       N S+   ++L  +E  ++T+S +G
Sbjct: 488 YLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMSHEG 547

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + K     D++   R G+G  AT   +++ +  L+     N +D I+  S +G +  + V
Sbjct: 548 YVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIV---ANTHDTILCFSSRGKVYWLKV 604

Query: 868 NEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            ++ +ASRA +G   V +    + E++ ++  IRE
Sbjct: 605 YQLPVASRAARGKPFVNLLPLEEGEKINAILPIRE 639


>gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 898

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/907 (47%), Positives = 584/907 (64%), Gaps = 42/907 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK +VK
Sbjct: 6   KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +VIE
Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  DG  YLSE Q RAILELRL RLTGL  + I  E   L  EI 
Sbjct: 426 AGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+ +DF+  L + +T  ++L FSS G +Y+ KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSRGRLYQLKVYQ 605

Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           LP  S  ARG  ++NIL L   + ERIT I+P P  E S +  ++  AT  G V++  L 
Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R   GR + G
Sbjct: 665 AFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTATG 723

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L+                              +  +I  D EE    ++ SSV  
Sbjct: 724 VRGIKLST--------------------TEISSEEIEEAEIIETDNEE---AEDSSSV-- 758

Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           ++ ++R   L +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E E
Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876

Query: 902 IVDEAES 908
             DE ES
Sbjct: 877 D-DENES 882


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/903 (45%), Positives = 577/903 (63%), Gaps = 75/903 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+  NYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+  IDN DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV+EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L  R WN  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      ++ + I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEAQFGI-RDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL++V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++NIL L +GERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDK------FIFMATGDGTVKKTP 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F  +  +G IA+ L   D ++ V+  T ++DI+L +K G+ VRF    +R   GR +
Sbjct: 659 LTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAM-GRTA 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   DQV+S+ IV   D D                                  
Sbjct: 718 AGVRGMKLNDDDQVVSL-IVPANDGD---------------------------------- 742

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +LTV++ G+GKRT   ++ +  R+ +G+ +  VS  N  G +
Sbjct: 743 ------------------VLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRN--GPV 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E +
Sbjct: 783 VGAVQVVEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELD 842

Query: 902 IVD 904
             D
Sbjct: 843 ETD 845


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/903 (46%), Positives = 577/903 (63%), Gaps = 69/903 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  R P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A+ID P + ++ LME I GPDFPT A++ GR GI++AY TGRG  V+R  + 
Sbjct: 188 SEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAIVNGRKGIEDAYKTGRGKAVMRARAT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEVK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +VILN LY  T LQ+ F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W   +++ +++   
Sbjct: 368 ELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEKAG 427

Query: 436 DS-------SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           D        S   G  DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I   
Sbjct: 428 DDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIAAL 487

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L IL S  RL+ +IK+EL  V +     RRT +    +D+  ED I  ED+VVT+SHLGY
Sbjct: 488 LYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVVTLSHLGY 547

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++LP
Sbjct: 548 AKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLP 607

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S QARG+ +IN+L L +GERIT I+P  E ++   + YV+ AT HG V++  L  + +
Sbjct: 608 LASRQARGRPIINLLPLAEGERITAILPVREYDA---DKYVIMATSHGTVKKTSLDQYSR 664

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ L   D+++ V+    +N+++L +  G+ VRF    +R   GR + GVRGI
Sbjct: 665 PRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVRGM-GRTATGVRGI 723

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  G  V+S+ +                                   KND +       
Sbjct: 724 KLEDGQSVVSLIVP----------------------------------KNDGA------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ILTV+E G+GKRT   ++   +R+ KG+ +  VS+ N  GA+V    V
Sbjct: 743 ------------ILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERN--GAVVGAVQV 788

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +ND+I+L+SDKGTL+R P + +    R T+GV I  TA DE VV ++RI   EI DE E
Sbjct: 789 LENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGLQRI--DEIQDEQE 846

Query: 908 STE 910
             E
Sbjct: 847 FDE 849


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 575/896 (64%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 11  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 71  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 131 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMATNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 191 SEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAE 250

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE+
Sbjct: 251 IEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEV 310

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 311 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRRTI 370

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++  
Sbjct: 371 FELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWELGNVASMLERA 430

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         S Y +  +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 431 GDDAARPEWLESQYGV-HEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIG 489

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++ELL++K + +  RRT + E   D+  ED I +ED+VVT+SH 
Sbjct: 490 ELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADINIEDLINQEDVVVTLSHQ 549

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 550 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDTILCFSSRGRLYWMKVYQ 609

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E   + LYV  AT  G V++  L DF
Sbjct: 610 LPEASRSARGRPIINLLPLEQDERITAILPVREYE---DGLYVFMATASGTVKKTALQDF 666

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G +A+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR + GVR
Sbjct: 667 SRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEEDAVRAM-GRTATGVR 725

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+V+S+ I                          G+ E +T  +N        
Sbjct: 726 GIKLNGKDKVVSLIIP------------------------RGEGEILTVTEN-------- 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                                G+GKRT+  ++ I +R+ +G+ +  VS+ N  G +V   
Sbjct: 754 ---------------------GYGKRTAENEYPIKSRATQGVISIKVSERN--GNVVGAI 790

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E E
Sbjct: 791 QVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAEPE 846


>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
 gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
          Length = 879

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/896 (46%), Positives = 587/896 (65%), Gaps = 73/896 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K A
Sbjct: 8   VSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH LL DL K+TVDF  NYDG+ + P VL  + PN++VNG  GIAVGMATNIP HNL
Sbjct: 128 EKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G +A+IDNP+I ++ LME I GPDFPT A I GR+GI  AY TGRG I +R  + 
Sbjct: 188 TEVINGTLALIDNPEISIEELMEFIPGPDFPTAASISGRSGIVEAYKTGRGRIHLRAKAE 247

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +E  + SG RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 248 VEVDEKSG-RESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++RG   +V+LN LY  T +Q +F +NMVAL+  +P+ F L  +L AFV  R EVV RR+
Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQPKLFNLYQVLDAFVRHRREVVTRRS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAI++AN+DEV+ +IR SP P  A++ L+ R W   ++  +++ 
Sbjct: 367 VYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLES 426

Query: 434 --IDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             +D +        Y I  DG+ YL+E Q +AIL+LRL +LTGL  + I +E   L  +I
Sbjct: 427 AGVDAARPEHLPEEYGI-RDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L IL S  RL+ +I++EL+ ++D     R+T I     D+  ED I  ED+VVT+SH
Sbjct: 486 EELLHILRSTERLMEVIREELVEIRDNFGDARKTEITAAAHDISMEDLINEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG++   M+D+DFV  L++ +TH ++L FS+ G +Y  KV+
Sbjct: 546 EGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRGRIYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  +RGK ++N+L L   ERIT I+P   +PED+      +V+ ATKHG V++  
Sbjct: 606 QLPLASRASRGKPIVNLLPLESDERITAILPTRDYPEDK------FVIMATKHGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L ++ +    G IA+ L+  DE++ V+    E +I+L +  G+ VRF    +R   GR +
Sbjct: 660 LPEYSRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L +G +V+S+                                          V
Sbjct: 719 TGVRGIRLEEGQKVVSLI-----------------------------------------V 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            G   +E       ++  ILTV+E GFGKRT   ++   +R+ KG+ +  VS+ N  GA+
Sbjct: 738 PGTYEDE-------QQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERN--GAV 788

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V    V D ++I+L+S+KGTL+R  VNE+ +  R T+GV +  T  DE+VV ++RI
Sbjct: 789 VGAMEVVDGNEIMLISNKGTLVRTRVNEVSMVGRNTQGVRLIRTGDDEQVVGLQRI 844


>gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
 gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
          Length = 874

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/896 (45%), Positives = 577/896 (64%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 14  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 74  RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH +L DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 AKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR  + 
Sbjct: 194 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAE 253

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 254 VEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 314 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ RSW    +  +++  
Sbjct: 374 FELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRSWALGTVAAMLERA 433

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y +  +G  +L+E Q +AIL+LRL +LTGL  + +  E   L  +I+
Sbjct: 434 GDDAARPEWLEPQYGV-HNGEYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLKQIE 492

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL ++++  +  RRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 493 ELLFILRSPDRLMEVIREELEAIRNVYNDARRTEITENTADINIEDLINQEDVVVTLSHQ 552

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 553 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 612

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +   YV  AT  G V++  L DF
Sbjct: 613 LPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTPLQDF 669

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR + GVR
Sbjct: 670 SRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTATGVR 728

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+V+S+ I                                         EG+I
Sbjct: 729 GIKLMDDDKVVSLII--------------------------------------PRGEGHI 750

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 751 ---------------LTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GHVVGAI 793

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V D DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E+E
Sbjct: 794 QVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 849


>gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
 gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
          Length = 874

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/896 (46%), Positives = 577/896 (64%), Gaps = 75/896 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEEQYGI-RDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 KELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++NIL L +GERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILPVDEFSEDK------FIFMATGDGTVKKTP 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR +
Sbjct: 659 LTQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAM-GRTA 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ LA+ DQV+S+ +                                       + 
Sbjct: 718 AGVRGMKLAEDDQVVSLIV--------------------------------------PAN 739

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           EG+I               LTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +
Sbjct: 740 EGDI---------------LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPV 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V    V + D++++++D GTL+R  V+E+    R T+GV +  TA+DE VV ++RI
Sbjct: 783 VGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838


>gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
          Length = 877

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/892 (47%), Positives = 578/892 (64%), Gaps = 41/892 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M   G ++NK Y K
Sbjct: 6   KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVD++PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A IDN  I +D LM  I GPDFPT A+I G+ GI+ AY TGRG I IR  
Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAIINGKRGIEEAYKTGRGKIYIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +++LN LY  T LQ  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEIVLNNLYALTQLQVTFGINIVALDHGQPKLLNLKELIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ + W   +++ ++  
Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAMLAA 425

Query: 434 I-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D    +G  G +Y LSE Q +AIL+LRL +LTGL  + I +E  SL   I 
Sbjct: 426 AGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLDVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S +RL+ +I++EL  +K + + PRRT I     D+  ED I  ED+VVT+SH 
Sbjct: 486 ELLHILHSPARLMEVIREELEKIKAQYNDPRRTEITASSGDINLEDLINPEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L + ERIT I+P  E      + ++V AT  G V++  L++F
Sbjct: 606 LPQASRGARGRPIVNLLPLEENERITAILPVKE---YAEDKFIVMATAGGLVKKTALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVR
Sbjct: 663 SRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  + +             DE                 D EE  + + D S++ +I
Sbjct: 722 GIKLALTNDI------------SDE---------------ENDNEESGNDETDQSLDLSI 754

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 755 DKVVSLVIPKTNGAILTATQNGYGKRTDLAEYPTKSRNTKGVISIKVSERN--GKVVAAA 812

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V +NDQI+L++D GTL+R  V EI +  R T+GV +  T+  E+VVS+ER+
Sbjct: 813 QVEENDQIMLITDAGTLVRTRVAEISLVGRNTQGVRLIRTSDTEQVVSIERV 864


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/894 (45%), Positives = 568/894 (63%), Gaps = 71/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            + L KARDRAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W    +  ++  
Sbjct: 366 IFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLER 425

Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                   D ++D  Y I  DG  YL+E Q +AILELRL RLTGL  + I +E  +L  E
Sbjct: 426 AGTDAARPDWLED-QYGI-RDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEE 483

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL+S  RL+ +I +EL  V+      RR+ I   + D++ E+ I RED+VVT+S
Sbjct: 484 IAELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVTLS 543

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 544 HEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKV 603

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L 
Sbjct: 604 YQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPEK---FIFMATGDGTVKKTSLD 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + G
Sbjct: 661 QFSNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAM-GRTAAG 719

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ LA  DQV+S+ +                                       S +G
Sbjct: 720 VRGMKLADEDQVVSLIV--------------------------------------PSNQG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +I               LTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V 
Sbjct: 742 DI---------------LTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERN--GPVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + D++++++D GTL+R  V E+    R T+GV +  TA DE VV ++RI
Sbjct: 785 AIQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTASDESVVGLQRI 838



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 13/160 (8%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILT 802
           E I  + H +++  RL+   TEE+  ++        S +   + +   +EL  +E  ++T
Sbjct: 482 EEIAELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVT 541

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R GKG  AT   K+ E   +  +   N +D I+  S +G  
Sbjct: 542 LSHEGYVKYQILSDYEAQRRGGKGKSAT---KMKEEDYIERLLVANTHDNILCFSTRGKT 598

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R+ V ++ +ASR  +G   V I    + ER+ ++  + E
Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSE 638


>gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 899

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/896 (46%), Positives = 585/896 (65%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 19  ISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 79  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 139 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N +I +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 199 GEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      E IVV EIPYQVNKA ++EKIA+LV+EK++  I+ + D SD+ G R+ I++K
Sbjct: 259 VETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAITDLSDKDGMRIEIKIK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T LQ  F +N+VAL+  +P+   L  +++AFV  R EVV RRT Y
Sbjct: 319 RDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEAFVLHRREVVTRRTVY 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPE+A+R L+ ++W    +  ++    
Sbjct: 379 ELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQAWELGHVSQMLAATG 438

Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DL  +  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 439 VDAARPEDL--EEQYGI-RDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDVI 495

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 496 GELLHILRSPERLMEVIREELEQIREQFNDPRRTEITASSADINLEDLIAQEDVVVTLSH 555

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S    ++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 556 EGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCFSSRGRLYWLKVY 615

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP  S  ARG+ ++NIL L++ ERIT I+P   + ED+      +VV AT  G V++  
Sbjct: 616 QLPQASRGARGRPIVNILPLDENERITAILPVTAYEEDK------FVVMATAGGIVKKIA 669

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +   +G IA+ L   DE++ V+    +N+I+L +  G+ VRF  +A+R   GR +
Sbjct: 670 LTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENAVRAM-GRAA 728

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA           L  D   DE                 D EEI+    + ++
Sbjct: 729 TGVRGIKLA-----------LTNDLSDDESAV--------------DMEEISDENTNDAL 763

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           + NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +
Sbjct: 764 DLNIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKVSERN--GKV 821

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA   V ++DQI+L++D GTL+R  VNEI I  R T+GV +  T++ E +V ++R+
Sbjct: 822 VAATQVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIRTSESETLVGLQRV 877


>gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336]
 gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336]
          Length = 881

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/894 (47%), Positives = 583/894 (65%), Gaps = 39/894 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK YVK A
Sbjct: 8   VTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSSNTYNKAYVKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 QKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A +DN +I +D LM+ I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 NEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE IVVTEIPYQVNKA ++EKIAELVREK+I  I+++RD S+++G RV +E+K
Sbjct: 248 IETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVSNKEGNRVEVEVK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EV+ RRT +
Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKLLNLKQIIEAFVRHRREVITRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434
            L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ ++W   ++  ++    
Sbjct: 368 ELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAWELGNVATMLSATG 427

Query: 435 ------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                 D+ +  +G  DG  YLS+ Q RAIL+LRL RLTGL  + I  E   + IEI + 
Sbjct: 428 VDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIVTEYQEILIEIGKL 487

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L IL+S  RL  ++ +EL  VK+E    RRT I     D+  ED I +ED++VT+SH GY
Sbjct: 488 LHILNSADRLKEVLCEELEKVKEEFGDARRTEITSASGDINLEDLITQEDVIVTLSHAGY 547

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS G +Y  KV++LP
Sbjct: 548 VKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSRGRLYWLKVYQLP 607

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +  ARG+ ++NIL L + ERIT I+P    E    + ++V AT  G V++  L++F +
Sbjct: 608 QANRGARGRPIVNILPLQENERITAILPVAAYEE---DKFIVMATAGGLVKKIALTEFSR 664

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              SG IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI
Sbjct: 665 PRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENAVRAM-GRLATGVRGI 723

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            LA           L  D   DE    ++ +S +      DT+E   L  D  V   I +
Sbjct: 724 KLA-----------LTNDISDDESAVEIEDISDE------DTKEPLDLNVDKVVSLVIPK 766

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  ILT ++ G+GKRT+  ++   +R+ KG+ +  VS  N  G +VA   V
Sbjct: 767 --------NDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSDRN--GKVVAATQV 816

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +NDQI+L++D GTL+R  V+EI I  R T+GV +  TA+ E+VVS+ER+ +++
Sbjct: 817 EENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIRTAETEQVVSLERVCDTD 870


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/905 (45%), Positives = 583/905 (64%), Gaps = 70/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 SEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGR---HVFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD VIS+ IV   + D                                      
Sbjct: 723 GINLGEGDSVISL-IVPRGEGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDTTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847

Query: 906 AESTE 910
            +S E
Sbjct: 848 LDSLE 852


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/893 (46%), Positives = 575/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI ++ LM  I GPDFPT A+I GR GI++AY TGRG I +R  
Sbjct: 186 NLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMINGRKGIEDAYRTGRGKIYLRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVVTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A A+VILN LY  T LQ+ F +NMVAL+  +P  F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVAEVILNNLYAQTQLQTSFGINMVALDNNQPRLFNLKDMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+DE++ +IR +  P  AR  L  R W+   +  +++ 
Sbjct: 366 IFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLEA 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + +  DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I
Sbjct: 426 TGVDAARPEWLEDEFGV-RDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + ILSS  RL+ +I++EL +V+D     RRT I     D++ ED I +ED+VVT+SH
Sbjct: 485 GELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLINQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 545 EGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRGRMYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L Q ERIT I+P  E E   ++ +V  AT  G V++  L+D
Sbjct: 605 QLPLASRTARGKPIVNLLPLEQDERITAILPVKEYE---DDKFVFMATSDGTVKKTPLTD 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   D ++ V+    +ND++L +K G+ VRF  S +R   GR + GV
Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAM-GRTAAGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ IV H + D                                     
Sbjct: 721 RGIKLAEGDKVVSL-IVPHNEGD------------------------------------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------VLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERN--GCVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V+   + +++++ GTL+R  V E+    R T+GV +  T++ ERVV ++RI
Sbjct: 786 VQVDTGYEFMMITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVVGLQRI 838


>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
 gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
          Length = 887

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/919 (45%), Positives = 584/919 (63%), Gaps = 82/919 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + I  D   YL+E Q +AIL+LRL +LTGL  + I  E  +L  EI
Sbjct: 426 AGTDAARPEWLEEQFGI-RDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 485 AELMYILSSSERLMEVIREELELVKEQFNDERRTEITAASHDIDMEDLITQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P  E      + +V  AT  G V++  L+D
Sbjct: 605 QLPLASRTARGKPIVNILPLEENERITAILPVRE---YTEDKFVFMATADGTVKKTPLTD 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI--------SAI 713
           F +   +G IA+ L   D ++ V+    + DI+L +  G+ VRF   P+          +
Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGV 721

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI LA+GD+VIS+ IV H D D                          
Sbjct: 722 RGM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGD-------------------------- 753

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LTV+E G+GKRT   ++   +R+ +G+ +  VS
Sbjct: 754 --------------------------VLTVTENGYGKRTELAEYPAKSRATQGVVSIKVS 787

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +V      D D+ +++++ GTL+R  V+E+    R T+GV +  T + E+VV 
Sbjct: 788 ERN--GRVVGAVQAEDGDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTTEGEKVVG 845

Query: 894 VERI--RESEIVDEAESTE 910
           ++RI   E E++++AE  E
Sbjct: 846 LQRIDEPEEELIEDAELVE 864


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/896 (45%), Positives = 580/896 (64%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 14  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 74  RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+ GC+A ID+ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR  + 
Sbjct: 194 GEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAE 253

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 254 VEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 314 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 374 FELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIARPWDLGNVAAMLERA 433

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y +  DG  YL+E Q +AIL+LRL +LTGL  + +  E   L  +I+
Sbjct: 434 GDDAARPEWLEEQYGV-HDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLKQIE 492

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL ++++  +  RRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 493 ELLYILRSPERLMEVIREELEAIRELYNDARRTEITENTADINIEDLISQEDVVVTLSHQ 552

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 553 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 612

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +   YV  AT  G V++  L DF
Sbjct: 613 LPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTALQDF 669

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR + GVR
Sbjct: 670 SRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRPM-GRTATGVR 728

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I                                         EG+I
Sbjct: 729 GIRLADEDKVVSLII--------------------------------------PRGEGHI 750

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 751 ---------------LTVTENGYGKRTAEQEYPTKSRATQGVISIKVSERN--GNVVGAI 793

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V++ DQI+++++ GTL+R  V+E+ +  R T+GV +  TA++E+VV ++R+ E+E
Sbjct: 794 QVDETDQIMMITNAGTLVRTRVSEVSVVGRNTQGVTLIRTAEEEKVVGLQRVAETE 849


>gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
 gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
          Length = 906

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/931 (45%), Positives = 582/931 (62%), Gaps = 103/931 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI
Sbjct: 426 AGTDAARPEWLEPEYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 GGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++NIL L +GERIT I+    F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK------FIFMATGDGTVKKTP 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI----- 710
           L+ F  +  +G IA+ L   D ++ V+    EN+I+L +K G+ VRF      P+     
Sbjct: 659 LNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENG 718

Query: 711 --------------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
                           +R   GR + GVRG+ LA+ DQV+S+ +  H             
Sbjct: 719 KPVLDENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSH------------- 764

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                    EG+               ILTV+E G+GKRT+  +
Sbjct: 765 -------------------------EGD---------------ILTVTENGYGKRTALSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           T+GV +  TA+DE VV ++RI E   VD+ E
Sbjct: 843 TQGVTLIRTAEDESVVGLQRIEE---VDDEE 870


>gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
 gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
          Length = 898

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/905 (45%), Positives = 584/905 (64%), Gaps = 69/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 40  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 100 RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 160 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 219

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR  + 
Sbjct: 220 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRASAE 279

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V+EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 280 VEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 339

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 340 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 399

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++  
Sbjct: 400 FELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARSWDLGNVAAMLERA 459

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  +G  +L+E Q +AIL+LRL +LTGL  + +  E   L ++I+ 
Sbjct: 460 GDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLVQIEA 519

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D  + PRRT I E   D+  ED I +ED+VVT+SH G
Sbjct: 520 LLFILRSPERLMEVIREELEIIRDTYNDPRRTEITENTADINIEDLINQEDVVVTLSHQG 579

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S    +DEDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 580 YVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTHDTILCFSSRGRLYWMKVYQL 639

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L Q ERIT I+P  E E  +N   V  AT  G V++  L +F 
Sbjct: 640 PEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN---VFMATASGTVKKTPLQEFS 696

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 697 RPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFAEDAVRPM-GRTATGVRG 755

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D+V+S+ I                                         EG+I 
Sbjct: 756 IKLMDNDKVVSLII--------------------------------------PRGEGHI- 776

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                         LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V    
Sbjct: 777 --------------LTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GNVVGAIQ 820

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V++ DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E++  + A
Sbjct: 821 VDETDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETDDDENA 880

Query: 907 -ESTE 910
            E+TE
Sbjct: 881 IENTE 885


>gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25]
 gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25]
          Length = 906

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/931 (45%), Positives = 582/931 (62%), Gaps = 103/931 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI
Sbjct: 426 AGTDAARPEWLEPEYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 GGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++NIL L +GERIT I+    F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK------FIFMATGDGTVKKTP 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI----- 710
           L+ F  +  +G IA+ L   D ++ V+    EN+I+L +K G+ VRF      P+     
Sbjct: 659 LNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENG 718

Query: 711 --------------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
                           +R   GR + GVRG+ LA+ DQV+S+ +  H             
Sbjct: 719 KPVLDENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSH------------- 764

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                    EG+               ILTV+E G+GKRT+  +
Sbjct: 765 -------------------------EGD---------------ILTVTENGYGKRTALSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           T+GV +  TA+DE VV ++RI E   VD+ E
Sbjct: 843 TQGVTLIRTAEDESVVGLQRIEE---VDDEE 870


>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
 gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
          Length = 878

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 576/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D++         Y I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDNAARPEWLEDQYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V   +  ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +                                   ++D ++    
Sbjct: 723 GIKLAEGDRVVSLIVP----------------------------------RDDGAI---- 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          +TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 745 ---------------MTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 70/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R  + 
Sbjct: 188 AEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYALTQLQVTFGINMVALHQGQPKLLNLKDILEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ + W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL++VK+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD VIS+ IV   + D                                      
Sbjct: 723 GINLGEGDSVISL-IVPRGEGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V  +DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVETSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847

Query: 906 AESTE 910
            +S E
Sbjct: 848 LDSLE 852


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/905 (45%), Positives = 582/905 (64%), Gaps = 70/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 SEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+E+
Sbjct: 248 VETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTFIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL++VK+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD VIS+ IV   + D                                      
Sbjct: 723 GINLGEGDGVISL-IVPRGEGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847

Query: 906 AESTE 910
            +S E
Sbjct: 848 LDSLE 852


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/900 (46%), Positives = 576/900 (64%), Gaps = 70/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A+I++ +I +D LME I GPDFPT A+I GR GI  AY TGRG I +R  + 
Sbjct: 188 SEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAIINGRRGIDEAYRTGRGKIYVRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKEILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/895 (45%), Positives = 572/895 (63%), Gaps = 73/895 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 12  VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 72  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL DL K+TVDF PNYDGS  EP+V  AR+PN+LVNG  GIAVGMATNIP HN+ EV
Sbjct: 132 AHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTEV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+A++ NPD+D++ L+E++  PDFPT   I G  G+K  Y TGRG +V+R  +H E 
Sbjct: 192 VDACLALLKNPDMDIEQLIELVPAPDFPTAGFIYGLAGVKEGYRTGRGRVVMRARTHFED 251

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              GDR+ I++ E+PYQVNKA +L KI E+VREKRI  ++++RDESD+ G R VIELKRG
Sbjct: 252 IGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELKRG 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +ADVILNQLY+ T +Q  F +NMVA+   +P+   L  +++AF+  R EVV RRT + L
Sbjct: 312 ENADVILNQLYKDTQMQDSFGINMVAIVDGQPKLCNLKDVIEAFLRHRREVVTRRTIFEL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+RELM R W +S ++D++  +D++
Sbjct: 372 RKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRVDEA 431

Query: 438 SYTIG-------SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           S   G         GT Y LS+ Q +AILELRL RLTGL +D I  E   +  +I + LD
Sbjct: 432 SRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDKITDLLD 491

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+  +R+  II  EL++++ +    RR+ IV    DM  ED I  ED+VVT+SH GY+K
Sbjct: 492 ILAKPARVTQIIGDELITIRSQFGDKRRSEIVTHTQDMSMEDLIAPEDVVVTMSHGGYMK 551

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
              L  YRAQ+RGG+G+     +++DF+ +LFI +TH  +L FS+ G VY  KV+ +P G
Sbjct: 552 AQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRVYWLKVYDVPQG 611

Query: 610 SPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           +  +RGK ++N+L L  GE+I  I+P   F ED+      ++ FAT  G V++  LSDF 
Sbjct: 612 TRISRGKPIVNLLPLEAGEKINAILPVKQFAEDQ------FIFFATSEGTVKKTPLSDFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++G IA+ LD  D ++ V     ++D++L +  G+ VRF    +R   GR + GVRG
Sbjct: 666 NPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGM-GRTARGVRG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++LAKG +VI+                          L+  + EE               
Sbjct: 725 MNLAKGGKVIA--------------------------LLVAENEE--------------- 743

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +LT +E G+GKRT   ++    R  +G+ A   S+ N  G +VA   
Sbjct: 744 -----------QSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERN--GKVVAATL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   D+I+L+   G LIR  VNEIR   RAT+GV + +  + E++  + RI E+E
Sbjct: 791 VKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGEKLAGLSRIAETE 845


>gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 901

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/901 (46%), Positives = 588/901 (65%), Gaps = 43/901 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K A
Sbjct: 19  ISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 79  RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 139 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A I+N +I +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 199 GEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      E IVV EIPYQVNKA ++EKIA+LV+EK+I  I+ + D SD+ G R+ I++K
Sbjct: 259 VETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAITDLSDKDGMRIEIKIK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T LQ  F +N+VAL+  +P+   L  +++AFV  R EVV RRT Y
Sbjct: 319 RDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEAFVLHRREVVTRRTVY 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL-- 433
            L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPETA+REL+ + W    + D++    
Sbjct: 379 ELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQPWKLGHVADMLAAAG 438

Query: 434 ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +D       +  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I E
Sbjct: 439 VDAARPEELEEQYGI-RDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYQKLLEVIGE 497

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH G
Sbjct: 498 LLYILRSPERLMEVIREELEQIREQFNDPRRTEITASSGDINLEDLIAQEDVVVTLSHEG 557

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S    ++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 558 YVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCFSSRGRLYWLKVYQL 617

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  +RG+ ++NIL L++ ERIT I+P    E    + +VV AT  G V++  L++F 
Sbjct: 618 PQASRGSRGRPIVNILPLDENERITAILPVTAYEE---DKFVVMATAGGIVKKISLTEFS 674

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GVRG
Sbjct: 675 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESAVRAM-GRAATGVRG 733

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA           L  D   DE                 + E+I+   +D  ++ N+ 
Sbjct: 734 IKLA-----------LTNDLSDDESAV--------------EIEDISDDNSDDILDLNVD 768

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   
Sbjct: 769 KVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKVSERN--GKVVAATQ 826

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V + DQI+L++D GTL+R  VNEI +  R T+GV +  T +DE +V ++R+   E+ +EA
Sbjct: 827 VEETDQIMLITDAGTLVRTRVNEISVVGRNTQGVRLIRTTEDETLVGLQRV--CEVDEEA 884

Query: 907 E 907
           E
Sbjct: 885 E 885



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 49/247 (19%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV---MRDEDFVTDLFIVSTHTSVLFFSS 594
            VV  +  G VK++ L+ +   R      SG++   +RDED +  + I      ++ FS+
Sbjct: 655 FVVMATAGGIVKKISLTEFSRPRS-----SGIIALNLRDEDELIGVDITDGSNEIMLFSA 709

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------ 642
            G     +V R    + +A G+A   +    +G ++       +DES+            
Sbjct: 710 QG-----RVVRFSESAVRAMGRAATGV----RGIKLALTNDLSDDESAVEIEDISDDNSD 760

Query: 643 ----------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEI 684
                            N   ++ AT++G  +R +L ++   +R+  G I++K+  R+  
Sbjct: 761 DILDLNVDKVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKVSERNGK 820

Query: 685 LSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +   T  +E D I+L T  G  VR  ++ I V  GRN+ GVR I   + + ++ +  V  
Sbjct: 821 VVAATQVEETDQIMLITDAGTLVRTRVNEISVV-GRNTQGVRLIRTTEDETLVGLQRVCE 879

Query: 744 ADADYDE 750
            D + ++
Sbjct: 880 VDEEAED 886


>gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
 gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
          Length = 887

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/919 (45%), Positives = 585/919 (63%), Gaps = 82/919 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + I  D   +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI
Sbjct: 426 AGTDAARPEWLEEQFGI-RDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 485 AELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P  E      + +V  AT  G V++  L+D
Sbjct: 605 QLPLASRTARGKPIVNILPLEENERITAILPVRE---YTEDKFVFMATADGTVKKTPLTD 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI--------SAI 713
           F +   +G IA+ L   D ++ V+    + DI+L +  G+ VRF   P+          +
Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGV 721

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI LA+GD+VIS+ IV H D D                          
Sbjct: 722 RGM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGD-------------------------- 753

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LTV+E G+GKRT   ++   +R+ +G+ +  VS
Sbjct: 754 --------------------------VLTVTENGYGKRTELAEYPAKSRATQGVVSIKVS 787

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G++V      D D+ +++++ GTL+R  V+E+    R T+GV +  T + E+VV 
Sbjct: 788 ERN--GSVVGAIQAEDGDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTIEGEKVVG 845

Query: 894 VERIRE--SEIVDEAESTE 910
           ++RI E   E++++AE  E
Sbjct: 846 LQRIDEPDEELIEDAELVE 864


>gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430]
 gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430]
 gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 878

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 576/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D++         Y I  +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDNAARPEWLEEQYGI-HNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +                                   ++D ++    
Sbjct: 723 GIKLAEGDRVVSLIVP----------------------------------RDDGAI---- 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          +TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 745 ---------------MTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841


>gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
 gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
          Length = 894

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/900 (46%), Positives = 575/900 (63%), Gaps = 76/900 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   PVV+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     RE I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+V+E
Sbjct: 246 ANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +VILN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFGLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +I+ +P P+ AR  L+   W   D+  +++ 
Sbjct: 366 IFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLER 425

Query: 434 --ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             +D       +  Y I   G  +L+E Q +AILELRL RLTGL  + I  E   L   I
Sbjct: 426 GGVDAARPEWLEPQYGI-HGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L IL S  RL+ +I+ EL +VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 485 EELLLILGSPERLMEVIRDELHAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+    M+DEDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L +GERIT I+P  E E+   + YV  AT  G V++  L+D
Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILPVREYEA---DKYVFMATADGTVKKTPLTD 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFA 717
           F +   +G IA+ L   D ++ V+     +DI+L +K G+ VRF  SA       +R   
Sbjct: 662 FSRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM- 720

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG+ LA GD+V+S+ IV H + D                              
Sbjct: 721 GRTAAGVRGMKLAAGDKVVSL-IVPHNEGD------------------------------ 749

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +LTV+E G+GKRT+  ++   +R+ +G+ +  VS  N 
Sbjct: 750 ----------------------VLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN- 786

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G++V      D D+ +++++ GTL+R  V E+    R T+GV +  TA  E VV ++RI
Sbjct: 787 -GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTADKELVVGLQRI 845


>gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
 gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
          Length = 888

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/909 (46%), Positives = 572/909 (62%), Gaps = 79/909 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V + DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G  WNKKYVK
Sbjct: 35  KEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYVK 94

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I G+VMGKYHPHG++AIYD L RMAQ +SLR  L++GQGNFGS+DGDPPAA RYTE 
Sbjct: 95  SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPPAAYRYTEA 154

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL D+ K+TVDF PNYDGS QEP VL  R PN+LVNG  GIAVGMATN+P H
Sbjct: 155 RMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVGMATNVPPH 214

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE +D C+ ++D+PD D  ALM  + GPDFPTGA+I G  GI+ AY TGRG I IR  
Sbjct: 215 NLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALINGAKGIREAYETGRGRIYIRAK 274

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +HIE   S  ++ IVV E+PYQVNKA +L KIAELV+EK+I  I  LRDESD+ G R+VI
Sbjct: 275 THIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESDKDGIRMVI 334

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG  A+VILN L++ T LQ +F +NM+AL G +P   +L   L+ F+A R EVV RR
Sbjct: 335 ELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQPRLLSLKEALQVFIAHRREVVTRR 394

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI- 431
           + Y L KAR+RAH+L GLAIA+AN+DE++ +IR S  P  A+  L+ R W    + D++ 
Sbjct: 395 SIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTPGQVVDMLA 454

Query: 432 ------DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    D      G  G  Y LS  Q +AIL+LRL RLTGL +D I  E   +  EI
Sbjct: 455 RAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQEFQEIIHEI 514

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +  L+IL    RLL +IK+ELL +K++ +  RRT+I++  L++  ED I  ED V+T+SH
Sbjct: 515 EALLEILQVPERLLAVIKEELLDIKNQFNDVRRTQILDTHLNLSLEDLIAEEDRVITLSH 574

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PL+ Y AQRRGGKG+S   ++DEDFV  L + +TH ++L F++ G VY  KV+
Sbjct: 575 EGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCFTNRGKVYWLKVY 634

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
            LP     A+GK ++N+L    GER+  ++    +PED+      Y++FATK G V++  
Sbjct: 635 ELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDYPEDQ------YLIFATKSGTVKKTP 688

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS++ +    G IA+ L   DE++ V       DI+L +  G+ VRF  +++R   GR+S
Sbjct: 689 LSEYSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSM-GRDS 747

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG++L  G +VI++ +V                            EE          
Sbjct: 748 TGVRGMNLDDGQRVIALCVV----------------------------EE---------- 769

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +G+I               LT++E G+GKRT   D+    R  KG+ +   S  N  G  
Sbjct: 770 QGDI---------------LTITENGYGKRTPVADYPQKGRGTKGVISIACSARN--GQA 812

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V +++ I+LV+D GTL+R  V EI  + R T+GV +  T   E++++V     ++
Sbjct: 813 VCAVQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRTTDSEKLIAV-----AK 867

Query: 902 IVDEAESTE 910
           IV E+E +E
Sbjct: 868 IVAESEDSE 876


>gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           parainfluenzae T3T1]
          Length = 881

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/919 (45%), Positives = 595/919 (64%), Gaps = 53/919 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIHSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+   KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E T   +EQI+VTE+PYQVNKA ++EKIAEL+++K+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV+RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S   + A  +L+ R
Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISR 413

Query: 421 SWNASDIKDLIDLIDDSSYTI---------GSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            W  ++  +++ L+D ++            GSD   YLS  Q  AILELRL RLTGL  +
Sbjct: 414 PWKLNN--EILGLLDAAARPAELAAEFGIKGSD--YYLSPEQVDAILELRLHRLTGLATE 469

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           ++ NE   L ++I E L I++S  RL+ +I++EL  V+ +    RRT I     D++ ED
Sbjct: 470 EVINEYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLED 529

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L 
Sbjct: 530 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILC 589

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +V+ A
Sbjct: 590 FSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEE---DKFVIMA 646

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  S
Sbjct: 647 TAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAES 706

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   GR + GVRGI LA           L  D   DE                 + EE
Sbjct: 707 AVRAM-GRLATGVRGIKLA-----------LTNDIADDESAV--------------EIEE 740

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           ++    + +++ NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  
Sbjct: 741 VSDDNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIK 800

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           VS+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE V
Sbjct: 801 VSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHV 858

Query: 892 VSVERIRESEIVDEAESTE 910
           VS+ER+   ++ DE E TE
Sbjct: 859 VSLERV--CDVDDEDEGTE 875


>gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
 gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
          Length = 878

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 577/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN+
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 TEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D++         Y I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDNAARPEWLEEQYGI-RDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +                                   ++D ++    
Sbjct: 723 GIKLAEGDRVVSLIVP----------------------------------RDDGAI---- 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          +TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 745 ---------------MTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  772 bits (1994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I+   D D                                      
Sbjct: 723 GINLNGDDKVVSL-IIPRGDGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTEVTEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVATTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/903 (45%), Positives = 583/903 (64%), Gaps = 70/903 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILSAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+AN+D ++ +IR +  P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L+E+Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPEFGI-HDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL++++++ +  RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ IV   + D                                      
Sbjct: 723 GINLQDDDRVVSL-IVPRGEGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE+VV ++R+ E    DE
Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            +S
Sbjct: 848 LDS 850


>gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 881

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/919 (45%), Positives = 595/919 (64%), Gaps = 53/919 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIHSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+   KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E T   +EQI+VTE+PYQVNKA ++EKIAEL+++K+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV+RR+ + L KAR+R H+L GLA+A +N+DEV+ IIR S   + A  +L+ R
Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISR 413

Query: 421 SWNASDIKDLIDLIDDSSYTI---------GSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            W  ++  +++ L+D ++            GSD   YLS  Q  AILELRL RLTGL  +
Sbjct: 414 PWKLNN--EILGLLDAAARPAELAAEFGIKGSD--YYLSPEQVDAILELRLHRLTGLATE 469

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           ++ NE   L ++I E L I++S  RL+ +I++EL  V+ +    RRT I     D++ ED
Sbjct: 470 EVINEYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLED 529

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L 
Sbjct: 530 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILC 589

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +V+ A
Sbjct: 590 FSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEE---DKFVIMA 646

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  S
Sbjct: 647 TAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAES 706

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   GR + GVRGI LA           L  D   DE                 + EE
Sbjct: 707 AVRAM-GRLATGVRGIKLA-----------LTNDIADDESAV--------------EIEE 740

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           ++    + +++ NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  
Sbjct: 741 VSDDNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIK 800

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           VS+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE V
Sbjct: 801 VSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHV 858

Query: 892 VSVERIRESEIVDEAESTE 910
           VS+ER+   ++ DE E +E
Sbjct: 859 VSLERV--CDVDDEDEGSE 875


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/900 (45%), Positives = 578/900 (64%), Gaps = 70/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A+I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+  SW   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + Y I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEYGI-RDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/905 (46%), Positives = 576/905 (63%), Gaps = 71/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ DI ++ LME I GPDFPTGA+I GR GI  AY TGRG + +R  + 
Sbjct: 188 SEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVYVRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPED-DE 846

Query: 906 AESTE 910
            E  E
Sbjct: 847 FEGEE 851


>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
 gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
          Length = 877

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/892 (45%), Positives = 569/892 (63%), Gaps = 69/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  + 
Sbjct: 188 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQAD 247

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+E+
Sbjct: 248 IETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D V+ +IR +P P  A+  L+ + W+   +  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLERA 427

Query: 435 DDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            DS+           G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++I 
Sbjct: 428 GDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQIA 487

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL ++K + + PRRT I E   D+  ED I  E++VVT+SH 
Sbjct: 488 ELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQ 547

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 548 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 607

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L DF
Sbjct: 608 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGK---FVFMATASGTVKKTPLQDF 664

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+ +L +  G+ VRF    +R   GR + GVR
Sbjct: 665 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPM-GRTATGVR 723

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L   D+V+S+ I+   + D                                      
Sbjct: 724 GMKLVDDDKVVSL-IIPRGEGD-------------------------------------- 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT   ++   NR+ +G+ +  VS+ N  G +V   
Sbjct: 745 --------------ILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERN--GKVVGAI 788

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T +DE VV ++R+
Sbjct: 789 QVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVVGLQRV 840


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/900 (45%), Positives = 576/900 (64%), Gaps = 70/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVTPTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847


>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
 gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
          Length = 883

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/892 (45%), Positives = 569/892 (63%), Gaps = 69/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 14  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 74  RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  + 
Sbjct: 194 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQAD 253

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+E+
Sbjct: 254 IETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVEI 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RRT 
Sbjct: 314 KRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRRTI 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D V+ +IR +P P  A+  L+ + W+   +  +++  
Sbjct: 374 FELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLERA 433

Query: 435 DDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            DS+           G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++I 
Sbjct: 434 GDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQIA 493

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL ++K + + PRRT I E   D+  ED I  E++VVT+SH 
Sbjct: 494 ELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQ 553

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 554 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 613

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L DF
Sbjct: 614 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGK---FVFMATASGTVKKTPLQDF 670

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+ +L +  G+ VRF    +R   GR + GVR
Sbjct: 671 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPM-GRTATGVR 729

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L   D+V+S+ I+   + D                                      
Sbjct: 730 GMKLVDDDKVVSL-IIPRGEGD-------------------------------------- 750

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT   ++   NR+ +G+ +  VS+ N  G +V   
Sbjct: 751 --------------ILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERN--GKVVGAI 794

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T +DE VV ++R+
Sbjct: 795 QVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVVGLQRV 846


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/897 (45%), Positives = 576/897 (64%), Gaps = 69/897 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K
Sbjct: 6   KEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDG+ + P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GCVA+I+NP   ++ L+E I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIISGRKGIEEAYRTGRGKIYLRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    +E I+V E+PYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE
Sbjct: 246 AEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR  SA+V+LN LY  T LQ++F +NMVAL+  +P+ F L   L+ F+  R EVV RRT
Sbjct: 306 VKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQPKVFNLKDTLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLAIA+AN+D V+ +I+ SP+P  A+ +L  + W   D+ ++++ 
Sbjct: 366 VYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAEMLER 425

Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  D I +E   L   I
Sbjct: 426 AGDDAARPDWLEPEYGI-RDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLLDVI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL +++DE    RRT I     D++ ED I RED+VVT+SH
Sbjct: 485 AELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQ+RGGKG+S   M+DEDF+  L + +TH  +L FS+ G +Y  KV+
Sbjct: 545 EGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARG+ ++NIL L +GERIT I+P  E     +  YV  AT +G V++ +L+ 
Sbjct: 605 QLPLASRNARGRPIVNILPLEEGERITAILPIKE---FVDGKYVFMATTNGTVKKTELTQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ L+  +E++ V+    +++I+L +  G+ VRF    +R   GR + GV
Sbjct: 662 YSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPM-GRTATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +  +V+S+ +                          G+   +T+ +N       
Sbjct: 721 RGIRLEEDQKVVSLIVP------------------------QGEGAVLTATEN------- 749

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                                 G+GKRT   ++   +R+ KG+ +  VS+ N  G +V  
Sbjct: 750 ----------------------GYGKRTDIAEYPAKSRATKGVVSIKVSERN--GLVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             VN++D+I+L+SD+GTL+R    E+    R T+GV +  T ++E VV ++RI E E
Sbjct: 786 VQVNEDDEIMLISDQGTLVRTRATEVSTVGRNTQGVTLIRTGENENVVGLQRIDEVE 842


>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
 gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
          Length = 880

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/909 (45%), Positives = 575/909 (63%), Gaps = 86/909 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI-------- 710
           L  F  +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF   PI        
Sbjct: 659 LDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTK 718

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVRGI L +GDQV+S+ IV   D D                       
Sbjct: 719 GGVRPM-GRTAAGVRGIKLVEGDQVVSL-IVPKNDGD----------------------- 753

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        ILTV+E G+GKRT+  ++   +R+ +G+ + 
Sbjct: 754 -----------------------------ILTVTENGYGKRTTLDEYPAKSRATQGVVSI 784

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV +  T++ E 
Sbjct: 785 KVSERN--GSVVGAVQVTEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGES 842

Query: 891 VVSVERIRE 899
           VV ++RI E
Sbjct: 843 VVGLQRIDE 851


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/921 (45%), Positives = 575/921 (62%), Gaps = 92/921 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDA+ R+AQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 QKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+ID P + ++ LME I GPDFPT A I GR GI +AY TGRG  V+R  + 
Sbjct: 188 TEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRAVMRSKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  +L+E Q +AILELRL RLTGL  + I +E   L I I  
Sbjct: 428 DDAARPEWLEPEYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIVIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  V ++    RRT I E  +DM  ED I  ED+VVT+SH G
Sbjct: 487 LLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVVTLSHTG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L+ GERIT I+P  E     ++ +++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVRE---YADDKFIIMATAHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------------ 708
               +G IA+ L   D+++ V+     +DI+L +  G+ VRF                  
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAET 723

Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              I A+R   GR + GVRGI L  G +V+S+ +                          
Sbjct: 724 GEEIIALRPM-GRTATGVRGIKLEDGQKVVSLIVP------------------------- 757

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                    K D ++                   LTV+E G+GKRT   ++   +R  KG
Sbjct: 758 ---------KGDGAI-------------------LTVTENGYGKRTELNEYPAKSRGTKG 789

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + +  V++ N  GA+V    V + D+I+L+SDKGTL+R P   + I  R T+GV I  TA
Sbjct: 790 VVSIKVTERN--GAVVGAVQVGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQGVTIIRTA 847

Query: 887 KDERVVSVERIRE---SEIVD 904
           +DE+VV ++RI E    EI+D
Sbjct: 848 EDEKVVGLQRIEEIQTDEILD 868


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/898 (44%), Positives = 566/898 (63%), Gaps = 67/898 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   +N+ Y K ARI 
Sbjct: 11  VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A YD + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP+++  R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 SHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++ CV ++DNP+I +D L+  I GPDFPT  +I G +GIK  Y TGRG +V+R  +H E+
Sbjct: 191 INACVEILDNPNISIDELLNFIPGPDFPTAGIIHGNSGIKEGYRTGRGRVVMRARTHFEE 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           T  G RE I++ E+PYQVNK  +LEKIAELV +K++  I+DLRDESD+ G RVVIELKRG
Sbjct: 251 TDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              DV+LN LY+ T LQ  F +NMVAL   +P+   L  +L AF+  R EV+ RRT + L
Sbjct: 311 EIPDVVLNNLYKQTQLQDSFGINMVALIDGQPKLLNLKQVLDAFLNHRREVITRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R H+L GLA+A+ N+DE+++II+ SP+P  A+ ELMQR W +S +  ++   D +
Sbjct: 371 RKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVSSMLKQGDAT 430

Query: 438 SYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            Y      ++Y        LS++Q + IL++RL RLTGL +D I NE   +   I + +D
Sbjct: 431 QYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIADLID 490

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R+  IIK EL  +K+     RR+ IVE   D+  ED I  +DMVVT+SH GY+K
Sbjct: 491 ILNKPDRVTSIIKTELEEIKETYGDDRRSEIVENAEDLSIEDLIAPQDMVVTLSHTGYIK 550

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
              L  YRAQ+RGG+G+     +D+DF+  +F+ ++H ++L FSS G VY  KV+ +P G
Sbjct: 551 AQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQVYWLKVYEVPQG 610

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  +RGK ++N+  L  GE+I  I+   E     +N Y+  AT  G V++  LSDF    
Sbjct: 611 SRVSRGKPIVNLFPLMPGEKINAILTVKE---FVDNEYIFMATAKGTVKKTPLSDFSNPR 667

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SG IA+KLD+ D ++       ENDI+L +  G+ V F  S +R   GRN+ GVRG+ L
Sbjct: 668 KSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSM-GRNARGVRGMKL 726

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +V+S+                                              I+E  
Sbjct: 727 TDGGEVLSLL---------------------------------------------IAENE 741

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            Q        ++  +E G+GKRT   +FR S R  +G++A  VS  N  G +V    V D
Sbjct: 742 AQS-------VMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRN--GQVVGAKLVGD 792

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D+++L++  G LIR  V+EIR   RAT+GV + + + DE++  +E++ ESE  DE +
Sbjct: 793 HDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDEKLRGLEKVAESEHHDEED 850


>gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
 gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
          Length = 880

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/905 (46%), Positives = 587/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+DL    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + EEI
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILTV++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 891

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
 gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
          Length = 897

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758]
 gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758]
          Length = 897

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175]
 gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175]
          Length = 916

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/912 (44%), Positives = 574/912 (62%), Gaps = 87/912 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R ++ 
Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  +L+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL+ + DE    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
               +G IA+ L   D+++ V+    +++I+L +  G+ VRF               P +
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              V +    GR + GVRGI L +G +V+S+ +                           
Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                   K D ++                   LTV+E G+GKRT   ++   +R+ KG+
Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  TA 
Sbjct: 791 VSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRTAG 848

Query: 888 DERVVSVERIRE 899
           DE+VV ++RI E
Sbjct: 849 DEKVVGLQRIDE 860


>gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola]
 gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola]
          Length = 885

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEG---CHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII]
 gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII]
          Length = 897

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEG---CHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10]
 gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004]
 gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038]
 gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 891

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEG---CHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/912 (45%), Positives = 573/912 (62%), Gaps = 87/912 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R ++ 
Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  +L+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT +G V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSNGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
               +G IA+ L   D+++ V+    +++I+L +  G+ VRF               P +
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              V +    GR + GVRGI L +G +V+S+ +                           
Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                   K D ++                   LTV+E G+GKRT   ++   +R+ KG+
Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P   + I  R T+GV I  TA 
Sbjct: 791 VSIKVSERN--GAVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRTAS 848

Query: 888 DERVVSVERIRE 899
           DE+VV ++RI E
Sbjct: 849 DEKVVGLQRIDE 860


>gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185]
 gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223]
 gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185]
 gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223]
          Length = 916

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/912 (44%), Positives = 574/912 (62%), Gaps = 87/912 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R ++ 
Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  +L+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL+ + DE    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
               +G IA+ L   D+++ V+    +++I+L +  G+ VRF               P +
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              V +    GR + GVRGI L +G +V+S+ +                           
Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                   K D ++                   LTV+E G+GKRT   ++   +R+ KG+
Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  TA 
Sbjct: 791 VSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRTAG 848

Query: 888 DERVVSVERIRE 899
           DE+VV ++RI E
Sbjct: 849 DEKVVGLQRIDE 860


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/903 (45%), Positives = 581/903 (64%), Gaps = 70/903 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I G+ GI+ AY TGRG + IR  + 
Sbjct: 188 SEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+ N+D ++ +IR +  P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L++ Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPEFGI-HDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL+++++  +  RRT I     D+  ED I  E++VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLISEENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ IV   + D                                      
Sbjct: 723 GINLQDDDRVVSL-IVPRGEGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GNVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DERVV ++R+ E    DE
Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            +S
Sbjct: 848 LDS 850


>gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 893

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/917 (45%), Positives = 579/917 (63%), Gaps = 89/917 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I N DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIA+LV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            +R A A+V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CRRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GL++A+AN+DE++ +IR +P P  A+  L+ R W+   +  +++ 
Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL RLTGL    I +E  +L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + ILS+  RL+ +I++EL   +D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELIHILSNTERLMEVIREELEMARDNFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L+ Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI-------- 710
           L  F  +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF   PI        
Sbjct: 659 LDQFSNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDEGNVK 718

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVRG+ L KGDQV+S+ IV   D D                       
Sbjct: 719 GGVRPM-GRTASGVRGMKLVKGDQVVSL-IVPKTDGD----------------------- 753

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        ILTV+E G+GKRT   ++   +R+ +G+ + 
Sbjct: 754 -----------------------------ILTVTENGYGKRTQLSEYPAKSRATQGVVSI 784

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            VS+ N  G +V     ++ D+ +++++  TL+R  V+E+    R T+GV +  T++ E+
Sbjct: 785 KVSERN--GKVVGAVQADEGDEFMMITNAATLVRTRVSEVSQVGRNTQGVTLIRTSEGEK 842

Query: 891 VVSVERIRESEIVDEAE 907
           VV ++RI E   +DEA+
Sbjct: 843 VVGLQRIEE---LDEAD 856


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/913 (45%), Positives = 569/913 (62%), Gaps = 76/913 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K   S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M   WN+ YVK
Sbjct: 6   KETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNRPYVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA RYTEC
Sbjct: 66  CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  +L D+ K+T+DF PNYDG  +EP VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++G + ++  PD  +D L++II  PDFPTG +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIYGVSGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   + R+ I+V E+PYQVNK  +LE+IAE VREK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN L++ T LQ  F +NMVAL   +P+   L  +L+ F+A R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+D+ + IIR +P P  AR+ELM RSWN+S +K +++
Sbjct: 366 TIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVKSMLE 425

Query: 433 L--------IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                    +DD         + I SDG   LSE Q   IL++RL RLTGL +D I NE 
Sbjct: 426 RTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKILNEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCI 533
             +  +I E LDIL+   R+L II  EL  V  E        RR+ I     D+E ED I
Sbjct: 486 GDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRSEIELNASDLETEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY K  PLS YRAQ+RGG+GR     +++D+V  LFI +TH  +L FS
Sbjct: 546 TPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYILCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFAT 652
             G +Y  KVW +P GS  +RGK ++N+  L   E+IT I+P   E+ +  +N Y+  AT
Sbjct: 606 DRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNFPDNHYIFMAT 665

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L+DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + 
Sbjct: 666 SQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDAGKAVRFDEND 725

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRG++L    +VI+M                         L++GD    
Sbjct: 726 VRPM-GRTARGVRGMNLEDDQKVIAM-------------------------LVAGD---- 755

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                  + Q +LT +E GFGKRT   ++    R  KG+ A   
Sbjct: 756 -----------------------ESQSVLTATENGFGKRTPIAEYTRHGRGTKGMIAIQT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   VN+ND+I+L++  G LIR  V+E+R   RAT+GV + +  +   + 
Sbjct: 793 SERN--GKVVAATLVNENDEIMLITTGGVLIRTRVSEVREMGRATQGVTLIAVEEGTTLS 850

Query: 893 SVERIRESEIVDE 905
            ++RI ES+I DE
Sbjct: 851 GLQRILESDIEDE 863


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/900 (45%), Positives = 575/900 (63%), Gaps = 70/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEEEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847


>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
 gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
          Length = 887

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 574/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 TEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+E+
Sbjct: 248 VETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+ANLD ++ +IR + NP  A+  L+ R W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D++         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDNAARPEWLEDEFGI-RDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIRILESSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATACGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D+V+S+ +                                         EG I
Sbjct: 723 GIKLAENDRVVSLIV--------------------------------------PQEEGAI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          +TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 745 ---------------MTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E
Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841


>gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195]
 gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195]
 gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678]
          Length = 916

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/912 (44%), Positives = 574/912 (62%), Gaps = 87/912 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R ++ 
Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  +L+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL+ + +E    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRSPERLMEVIKEELVQILEEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
               +G IA+ L   D+++ V+    +++I+L +  G+ VRF               P +
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              V +    GR + GVRGI L +G +V+S+ +                           
Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                   K D ++                   LTV+E G+GKRT   ++   +R+ KG+
Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  TA 
Sbjct: 791 VSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRTAG 848

Query: 888 DERVVSVERIRE 899
           DE+VV ++RI E
Sbjct: 849 DEKVVGLQRIDE 860


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/895 (45%), Positives = 577/895 (64%), Gaps = 72/895 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 ARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +E  + SG RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 248 VEADEKSG-RETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+ N+D ++ +IR +  P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAMLER 426

Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D +         + I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 427 AGDDAARPEWLEPEFGI-RDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              L IL S  RL+ +I++EL ++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRGRLYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+ IV   + D                                     
Sbjct: 722 RGINLQDDDRVVSL-IVPRGEGD------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV+E G+GKRT+  D+   +R+ KG+ +  VS+ N  G +V  
Sbjct: 744 ---------------ILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERN--GNVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA++ERVV ++R+ E
Sbjct: 787 VQVDTTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAE 841


>gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
 gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
          Length = 901

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/918 (44%), Positives = 577/918 (62%), Gaps = 94/918 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 EKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+ P++ ++ LME I GPDFPT A+I G+ GI+ AY TGRG  ++R  + 
Sbjct: 188 TEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKAIMRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +QS F +NMVAL   +P+ F L  +L+AF+  R EVV RRT Y
Sbjct: 308 RGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRREVVTRRTVY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAH+L  LA+A+AN+D ++ +I+ S +P  A+  L+ + W    +K +++   
Sbjct: 368 ELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  DG  +++E Q +AIL+LRL +LTGL  + I  E   L   I  
Sbjct: 428 DDAARPEWLEPEFGI-RDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  + ++    RRT I    +D+  ED I  ED+VVT+SHLG
Sbjct: 487 LLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDISLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARG+ ++N+L L +GERIT I+P  E E      Y++ AT HG V++  L+++ 
Sbjct: 607 PLASRQARGRPIVNLLPLQEGERITAILPVREYEEGK---YILMATSHGTVKKTALTEYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------PI-- 710
           +   +G IA+ L   D+++ V+     ++I+L +  G+ VRF              P+  
Sbjct: 664 RPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLD 723

Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRGI+L +G +V+S+ +                     
Sbjct: 724 EEGKPQINFKGVRPM-GRGATGVRGIALEEGQRVVSLIVP-------------------- 762

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                         K+DS+                   ILTV+  GFGKRT   ++   +
Sbjct: 763 --------------KDDSA-------------------ILTVTANGFGKRTELAEYPAKS 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ KG+ +  V++ N  G +V    V +ND+I+L+SDKGTL+R P   + I  R T+GV 
Sbjct: 790 RATKGVVSIKVTERN--GPVVGAVQVGENDEIMLISDKGTLVRTPAIGVSIIGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           I  TA DE VV ++RI E
Sbjct: 848 IIRTADDETVVGLQRIDE 865


>gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
 gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
          Length = 878

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/893 (45%), Positives = 572/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N +I +D LM  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + I  +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEPEFGI-REGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I+ EL+ V+D     RRT I   + D++ ED I +ED+VVT+S 
Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSR 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y  KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVF 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  
Sbjct: 605 QLPQASRTARGKPIVNILPLEEGERITAILPVSE---YSEDKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +G IA+ L   D ++ V+     ++I+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGM-GRTASGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L+  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLSGEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++   +R+ +G+ +  VS+ N  G++V  
Sbjct: 743 ---------------ILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               D D+ ++++D GTL+R  V+E+    R T+GV +  T+++E VV+++RI
Sbjct: 786 VQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRI 838


>gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
 gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
          Length = 882

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/905 (46%), Positives = 585/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/919 (45%), Positives = 574/919 (62%), Gaps = 78/919 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K   S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M   WN+ YVK
Sbjct: 6   KETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNRPYVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA RYTEC
Sbjct: 66  CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L D+ K+T+DF PNYDG  +EP VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G + ++ +PD  +D L++II  PDFPTG +I G TG++  Y TGRG +V+R  
Sbjct: 186 NLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIYGVTGVREGYRTGRGRVVMRAR 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   D R+ I++ E+PYQVNK  +LE+IAE VREK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   A+V+LN L++ T LQ  F +NMVAL   +P+   L  +L+ F+A R EVV RR
Sbjct: 306 ELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  AR+ELM RSW++S ++ +++
Sbjct: 366 TIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSLVRSMLE 425

Query: 433 L--------IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                    +DD         Y I SDG   LSE Q   IL++RL RLTGL +D I NE 
Sbjct: 426 RTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRILNEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDMEDEDC 532
             +  +I E LDIL+   R+L II  EL +V  E      DT RR+ I     D+E ED 
Sbjct: 486 GDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDT-RRSEIELNASDLETEDL 544

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  +DMVVT+SH GY+K  PLS YRAQ+RGG+GR     +++D+V  LFI +TH  +L F
Sbjct: 545 ITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYILCF 604

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651
           S  G +Y  KVW +P GS  +RGK ++N+  L   E+IT I+P   E+ +   N Y+  A
Sbjct: 605 SDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNFPENHYIFMA 664

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L+DF    ++G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 665 TSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDAGKAVRFDEN 724

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GV+G++L    +VI++                         L++GD   
Sbjct: 725 DVRPM-GRTARGVKGMNLEDEQKVIAL-------------------------LVAGD--- 755

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   + Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 756 ------------------------ENQSVLTATENGFGKRTPIAEYTRHGRGTKGMIAIQ 791

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V++ND+I+L++  G LIR  V+EIR   RAT+GV + S  +   +
Sbjct: 792 TSERN--GKVVAATLVSENDEIMLITTGGVLIRTRVSEIREMGRATQGVTLISIEEGTTL 849

Query: 892 VSVERIRESEIVDEAESTE 910
             ++RI ES+I D  E +E
Sbjct: 850 SGLQRILESDIEDVPEGSE 868


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 570/894 (63%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 AKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE I+V EIPYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE+
Sbjct: 248 IEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LA+A+AN+D ++ +IRF+  P  A+  L+ + W    +  +++  
Sbjct: 368 FELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         S Y +  +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLESQYGV-HEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL +  RL+ +I++ELL++K +    RRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILENPERLMEVIREELLAIKAQYSDARRTEITENTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E     LYV  AT  G V++  L DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEQNERITAILPVREYEEG---LYVFMATASGTVKKTALQDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G +A+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFAEEAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+V+S+ I                          G+ E +T  +N        
Sbjct: 723 GIKLNGEDKVVSLIIP------------------------RGEGEILTVTEN-------- 750

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                                G+GKRT+  ++ I +R+ +G+ +  VS+ N  G ++   
Sbjct: 751 ---------------------GYGKRTAENEYPIKSRATQGVISIKVSERN--GNVIGAI 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E
Sbjct: 788 QVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAE 841


>gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4]
 gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4]
          Length = 907

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/916 (45%), Positives = 574/916 (62%), Gaps = 94/916 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  + 
Sbjct: 188 VEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSKAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE K
Sbjct: 248 IEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIECK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++   
Sbjct: 368 ELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLERAG 427

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    +  Y I  DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI E
Sbjct: 428 TDAARPEWLEEQYGI-RDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH G
Sbjct: 487 LMHILASTERLMEVIREELETVRDVYGDERRTEITAASHDIDMEELIAREDVVVTLSHEG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++L
Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARGK ++NIL L  GERIT I+P   DE S    ++  AT  G V++  L+ F 
Sbjct: 607 PHATRTARGKPIVNILPLEDGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQFA 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI---------- 710
            +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF      P+          
Sbjct: 664 NVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVLD 723

Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRG+ LA+ DQV+S+ +                     
Sbjct: 724 ENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIV--------------------- 761

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                             S EG+               ILTV++ G+GKRT   ++    
Sbjct: 762 -----------------PSNEGD---------------ILTVTQNGYGKRTELSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V+E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERI 897
           +  TA+DE VV ++RI
Sbjct: 848 LIRTAEDESVVGLQRI 863


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR    
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     ++ + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/905 (45%), Positives = 578/905 (63%), Gaps = 70/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 49  ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + R+AQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 109 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 168

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 169 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 228

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 229 SEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 288

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+E+
Sbjct: 289 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVEV 348

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 349 KRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRTI 408

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ + W+  ++  +++  
Sbjct: 409 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAMLERA 468

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 469 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 527

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL +V+D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 528 ELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLSHQ 587

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 588 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 647

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 648 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 704

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP S +R   GR + GVR
Sbjct: 705 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSM-GRTATGVR 763

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD VIS+ IV   + D                                      
Sbjct: 764 GINLGEGDSVISL-IVPRGEGD-------------------------------------- 784

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 785 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 828

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 829 QVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 888

Query: 906 AESTE 910
            +S E
Sbjct: 889 LDSIE 893


>gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866]
          Length = 880

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + EEI
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/910 (44%), Positives = 584/910 (64%), Gaps = 83/910 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 8   ILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+AA+YD + R+AQ +S+R  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL D+ K+TVDF  NYDGS QEP VL  R PN+LVNGG GIAVGMATNIP HNL
Sbjct: 128 ARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D CVA++D+P++ +++L+E +  PD PTG +I G  GI  A+ TGRG +V+R  + 
Sbjct: 188 REVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGTAGIHQAFRTGRGRMVLRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+ + DRE+IVVTE+PYQVNKA ++EKIAELV+E+R+  I++LRDESD++G R+V+ELK
Sbjct: 248 VEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG + +++LN LYR+T +Q++F +N+VAL+  +P    L  +L+AF+  R EVV RRT Y
Sbjct: 308 RGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQPRTLNLRQVLEAFIRHRREVVTRRTIY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431
            L KAR+RAHVL GLA+A+AN+DEV+ +I+ S  P  A+ EL+ R W    + +++    
Sbjct: 368 ELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLERAG 427

Query: 432 -------DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                  DL D   + + +D  +Y LSE Q +AIL+LRL RLT + +D I  E ++L   
Sbjct: 428 AAATRPEDLAD--HFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLER 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL S  RL+ +I++EL++++D+    R+T I E   ++  ED I  EDMVVT+S
Sbjct: 486 IAELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL  YRAQRRGG+G+S   M+DEDF+  LFI +TH ++L FSS G  Y  KV
Sbjct: 546 HHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660
           + LP GS  +RG+ ++N+L L + ERI  ++P   F ED       +V  AT++G V++ 
Sbjct: 606 YELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFDEDH------FVFMATRNGTVKKT 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS F +   SG IA++L   D ++  E    + +++L +  G+ +RF  S +R   GR 
Sbjct: 660 PLSHFSRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAM-GRT 718

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI L  G +VI++                         LI G             
Sbjct: 719 AGGVRGIRLESGQRVIAL-------------------------LILG------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            EG+I               LT +E G+GKRT   D+    R G G+     ++ N  G 
Sbjct: 741 -EGDI---------------LTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERN--GR 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V      ++D+I+LVS  GTL+R PV ++    R T+GV + S  + E++V +ER+   
Sbjct: 783 VVGAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAEQLVGLERV--- 839

Query: 901 EIVDEAESTE 910
           E + E E+ E
Sbjct: 840 EGLAEGEAPE 849


>gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
 gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
          Length = 878

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/893 (45%), Positives = 572/893 (64%), Gaps = 69/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N +I +D LM  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  + I  +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEPEFGI-REGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I+ EL+ V+D     RRT I   + D++ ED I +ED+VVT+S 
Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSR 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y  KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVF 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  
Sbjct: 605 QLPQASRTARGKPIVNILPLEEGERITAILPVSE---YSEDKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +G IA+ L   D ++ V+     ++I+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGM-GRTASGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L+  DQV+S+ +                                       S EG+
Sbjct: 721 RGMKLSGEDQVVSLIV--------------------------------------PSNEGD 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT   ++   +R+ +G+ +  VS+ N  G++V  
Sbjct: 743 ---------------ILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               D D+ ++++D GTL+R  V+E+    R T+GV +  T+++E VV+++RI
Sbjct: 786 VQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRI 838


>gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 885

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/896 (45%), Positives = 574/896 (64%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+  SW   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAMLERA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     ++ + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDVRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
 gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
          Length = 880

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/918 (46%), Positives = 593/918 (64%), Gaps = 52/918 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKITLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  ++E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERIRESEIVDEAESTE 910
           S+ER+ ++   DE +S E
Sbjct: 860 SLERVCDA---DEEDSLE 874


>gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS]
 gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS]
          Length = 875

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/892 (46%), Positives = 572/892 (64%), Gaps = 70/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 14  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDA+ R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 74  RVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 AKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A ID+ +I ++ L+E I GPDFPT A+I GR GI +AY TGRG + IR  ++
Sbjct: 194 SEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAN 253

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 254 IEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+V+LN LY  T LQ  F +NMVAL   +P    L  IL+AFV  R EVV RRT 
Sbjct: 314 KRDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQPRLLNLKEILEAFVRHRREVVTRRTI 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LA+A+AN+D ++ +IR +  P  A+  L+ R W   ++  ++   
Sbjct: 374 FELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIARPWQLGNVSAMLASA 433

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D++         Y +  +G  YL+E Q +AIL+LRL +LT L  D I +E   L  +I 
Sbjct: 434 GDNAARPEWLEPQYGV-REGQYYLTEPQAQAILDLRLQKLTSLEHDKILDEYRELLKQIA 492

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL+S  RL+ +I++EL +VK++    RRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 493 ALLYILTSPERLMEVIREELEAVKEQYRDVRRTEITENSADINIEDLINQEDVVVTLSHQ 552

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 553 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 612

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E +      YV  AT  G V++  L DF
Sbjct: 613 LPEASRGARGRPIVNLLPLEQNERITAILPVREFDDGH---YVFMATASGTVKKTSLKDF 669

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +N+++L +  G+ VRF  +A+R   GR + GVR
Sbjct: 670 SRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVVRFAENAVRPM-GRTATGVR 728

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD+V+S+ IV   + D                                      
Sbjct: 729 GIKLHAGDKVVSL-IVPRGEGD-------------------------------------- 749

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 750 --------------ILTVTENGYGKRTEQSEYPTKSRATQGVISIKVSERN--GNVVGAI 793

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V   DQI++++D GTL+R  V E+ I  R T+GV +  TA+DE+VV ++R+
Sbjct: 794 QVEKTDQIMMITDAGTLVRTRVAEVSIVGRNTQGVTLIRTAEDEKVVGLQRV 845


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/896 (46%), Positives = 573/896 (63%), Gaps = 70/896 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D+P+I LD +M+II GPDFPT A+I GR GI   Y TG+G  +IR  
Sbjct: 186 NLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAIINGRAGIIQGYRTGKGRAIIRAR 245

Query: 254 SHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + IE T  D  R+ I++TE+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVV
Sbjct: 246 TEIE-TDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR   ADVILN LY  T +Q++F +NMVAL   +P    L  IL+ F+  R EVV R
Sbjct: 305 IELKRQEIADVILNNLYTQTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A++ L+ + W    +K ++
Sbjct: 365 RTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTML 424

Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         DD +   G     Y LSE Q +AILELRL RLT L +D I +E   L   
Sbjct: 425 ERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKL 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E L+IL+S  RL+ +I+ E + +K +    RRT I+E   D+  ED I  E++VVT+S
Sbjct: 485 IRELLEILASPERLMQVIRDEFVEIKTQFGDERRTEIIESQEDLTIEDLITEENVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  P+S Y+AQRRGGKG+S   ++DEDFV+ L I STH ++L FS+ G +Y  K 
Sbjct: 545 HQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKA 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP+ S  +RG+ +INIL L +GE I  ++P  E     +  YV  ATK G V++  L+
Sbjct: 605 YELPLASRISRGRPIINILPLAEGEEINAMLPVRE---YLDGYYVFMATKKGTVKKVPLN 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +   +G IA+ LD  D ++ V+      DI+L T  G+ VRF  + +R   GR + G
Sbjct: 662 AFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPM-GRTARG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI + +   VIS+ +V H D                                      
Sbjct: 721 VRGIRIEEEQAVISL-VVAHPDGT------------------------------------ 743

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ILT +E G+GKRTS  ++R+S R G+G+ +  V++ N  G +V 
Sbjct: 744 ----------------ILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNERN--GKVVR 785

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              V D D+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E+VV +++I +
Sbjct: 786 SVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGMQKIED 841


>gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae 10810]
          Length = 880

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/905 (46%), Positives = 585/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/903 (45%), Positives = 580/903 (64%), Gaps = 70/903 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  + 
Sbjct: 188 SEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKDILAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+ N+D ++ +IR +  P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG   L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPEFGI-HDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL +++++ +  RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ IV   D D                                      
Sbjct: 723 GINLQDDDRVVSL-IVPRGDGD-------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA++ERVV ++R+ E    DE
Sbjct: 788 QVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            +S
Sbjct: 848 LDS 850


>gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
 gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
          Length = 880

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   +DI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + EEI
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010]
          Length = 875

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 879

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/894 (45%), Positives = 577/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI 
Sbjct: 428 GDDAARPEWLEPEYGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                         EG+I
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841


>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
 gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
          Length = 894

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/923 (44%), Positives = 574/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV  A+ D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKAEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/896 (45%), Positives = 572/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR    
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAMLERA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     ++ + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843


>gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301]
 gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T]
 gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227]
 gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. W3110]
 gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A]
 gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94]
 gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1]
 gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989]
 gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088]
 gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736]
 gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A
 gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A
 gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli]
 gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli]
 gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K12 substr. W3110]
 gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227]
 gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A]
 gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94]
 gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           55989]
 gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI1]
 gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088]
 gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W]
 gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431]
 gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112]
 gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B]
 gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14]
 gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68]
 gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180]
 gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357]
 gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11]
 gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520]
 gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482]
 gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120]
 gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863]
 gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1]
 gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167]
 gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v]
 gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74]
 gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9]
          Length = 875

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 879

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/894 (45%), Positives = 577/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HIFMATASGTVKKTSLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                         EG+I
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 745 ---------------LTVTQNGFGKRTAVNEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDENVVGLQRVAE 841


>gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024]
 gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026]
 gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359]
 gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354]
 gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185]
 gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299]
 gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli]
 gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           UMN026]
 gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. TW14359]
 gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042]
 gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185]
 gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354]
 gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101]
 gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89]
 gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687]
 gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905]
 gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G]
 gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125]
 gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044]
 gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299]
          Length = 875

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
 gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
          Length = 899

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/905 (45%), Positives = 584/905 (64%), Gaps = 52/905 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   ILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL DL KDTVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 ARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHNM 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--- 252
            EV+DGC+A+ID+  + +D LME I GPDFPTG +I GR GI  AY TGRG I +R    
Sbjct: 188 VEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRARHT 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + H EKT   R+ I+VTE+PYQVNKA ++EKIAELV++KRI  IA+LRDESD++G RVVI
Sbjct: 248 IEHDEKTG--RDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +V++N L+  T LQ++F +NMVAL+G +P    +  +L+AF+  R EVV RR
Sbjct: 306 EVKRGESGEVVVNNLFAQTQLQNVFGINMVALDGGEPRTLNIKEVLEAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A++N+DEV+ +I+ SP+   A+ +L++R+W    +  +++
Sbjct: 366 TLFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLE 425

Query: 433 LIDDSS---------YTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
               +S         + + + G  Y LS  Q +AILELRL RLTGL  + + +E   +  
Sbjct: 426 RAGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILE 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E   IL+S  RLL +I++EL +V+D+    RRT I    LD+  ED I  EDMVVTV
Sbjct: 486 KIAELTAILASADRLLEVIREELTAVRDQFGETRRTEIQASHLDLSIEDLIAEEDMVVTV 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY K  PLS Y+AQRRGG+G+S   M+DED +  L + STH +VL FS+ G VY  K
Sbjct: 546 SRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRGKVYWLK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P  S  +RGK L+N+L L + E I  I+P  + +    + Y+ FAT  G V+R  L
Sbjct: 606 VYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYDP---DSYIFFATAKGTVKRTSL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + F +    G IA+ L+  D ++     +  +  +L +  G+ +RF  S +R   GR + 
Sbjct: 663 AQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM-GRTAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L  G +VIS+ I                    + +LI             +  +
Sbjct: 722 GVRGMRLLDGAEVISLII-------------------PRSQLID------------AEDQ 750

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            + + +  + L   + +ILT SE G+GKRT   +F +  R G+G+ A   S+ N  G+LV
Sbjct: 751 DDAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERN--GSLV 808

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V  +D+++L++DKGTL+R  V+E+ I+SR T+GV++    + E +V   RI E E 
Sbjct: 809 AAMQVYASDEMMLITDKGTLVRTRVDEVSISSRNTQGVMLIRLGESESLVKTVRIDEPEE 868

Query: 903 VDEAE 907
           VD AE
Sbjct: 869 VDAAE 873


>gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
 gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
          Length = 875

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTECEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846]
          Length = 882

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/905 (46%), Positives = 584/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRAGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39]
 gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI39]
          Length = 875

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PGATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017]
          Length = 875

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
 gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
          Length = 884

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus
           influenzae F3031]
 gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3031]
          Length = 882

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
 gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
          Length = 894

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/923 (44%), Positives = 574/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV  A+ D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKAEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407]
          Length = 875

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQ+NKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
 gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
          Length = 878

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/892 (45%), Positives = 568/892 (63%), Gaps = 69/892 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+D+++ +IR +  P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425

Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               +         Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLELQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L   ERIT I+P  E     ++ ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEDNERITAILPVTE---FSDDKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +GDQV+S+ IV   D D                                     
Sbjct: 721 RGMKLMEGDQVVSL-IVPKTDGD------------------------------------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERN--GRVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++ D+ +++++ GTL+R  V E+    R T+GV +  T++DE+VV ++R
Sbjct: 786 VQADEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVVGLQR 837


>gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
 gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
          Length = 880

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047]
 gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3047]
          Length = 880

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/918 (46%), Positives = 592/918 (64%), Gaps = 52/918 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+T++F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERIRESEIVDEAESTE 910
           S+ER+ ++   DE +S E
Sbjct: 860 SLERVCDA---DEEDSLE 874


>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
 gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
          Length = 879

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/902 (45%), Positives = 584/902 (64%), Gaps = 72/902 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 REVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAI++AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++  
Sbjct: 368 FELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL +++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILASAERLMEVIREELEAMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R   GR++ GVR
Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAM-GRSASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI                                   +L  GD  ++ SL          
Sbjct: 723 GI-----------------------------------KLAEGD--KVVSLI--------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +  +E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G +V   
Sbjct: 737 -------VPREEGAILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+  +E V+E
Sbjct: 788 QVDDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRV--AEPVEE 845

Query: 906 AE 907
            E
Sbjct: 846 EE 847


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/892 (45%), Positives = 568/892 (63%), Gaps = 69/892 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+D+++ +IR +  P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L   ERIT I+P  E     ++ ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEDNERITAILPVTE---FSDDKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF    +R   GR + GV
Sbjct: 662 FSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +GDQV+S+ IV   D D                                     
Sbjct: 721 RGMKLMEGDQVVSL-IVPKTDGD------------------------------------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 743 ---------------ILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERN--GRVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++ D+ +++++ GTL+R  V E+    R T+GV +  T++DE+VV ++R
Sbjct: 786 VQADEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVVGLQR 837


>gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146]
 gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 878

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/894 (45%), Positives = 575/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 IEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++   
Sbjct: 368 FELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLARA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALAEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ IV H                                          
Sbjct: 723 GIKLAGDDRVVSL-IVPHG----------------------------------------- 740

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKR+S  ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 741 -----------EGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D+DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E
Sbjct: 788 QVEDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVE 841


>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
 gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
          Length = 893

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/923 (44%), Positives = 574/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV  A+ D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKAEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253]
          Length = 878

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171]
 gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  +A+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRSAEDENVVGLQRV--AEPVDE 845


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/921 (44%), Positives = 573/921 (62%), Gaps = 100/921 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R ++ 
Sbjct: 188 TEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRALAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  DG  YL+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPEFGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  +RG+ ++N+L L+ GERIT I+P   + ED+      Y++ AT +G V++  L+
Sbjct: 607 PLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------- 709
            +     +G IA+ L   D+++ V+    +++I+L +  G+ VRF               
Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNA 720

Query: 710 -----------ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
                         +R   GR + GVRGI L +G +V+S+ +                  
Sbjct: 721 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVP----------------- 762

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                            K D ++                   LTV+E G+GKRT   ++ 
Sbjct: 763 -----------------KGDGAI-------------------LTVTENGYGKRTELSEYP 786

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ KG+ +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P N + I  R T+
Sbjct: 787 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 844

Query: 879 GVVIFSTAKDERVVSVERIRE 899
           GV I  TA DE+VV ++RI E
Sbjct: 845 GVTIIRTASDEKVVGLQRIDE 865


>gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046]
 gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905]
 gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82]
 gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/901 (45%), Positives = 581/901 (64%), Gaps = 74/901 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +E   KT   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 248 VEVDGKTG--RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +                          GD   +T+ +N       
Sbjct: 722 RGIRLGEGDKVVSLIVP------------------------RGDGAILTATQN------- 750

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                                 G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 751 ----------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VD
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVD 844

Query: 905 E 905
           E
Sbjct: 845 E 845


>gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908]
 gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908]
          Length = 905

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/915 (45%), Positives = 567/915 (61%), Gaps = 93/915 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+   P VL  R P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 DKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+NPD+ ++ LME I GPDFPT  +I GR GI +AY TGRG  V+R  + 
Sbjct: 188 NEVVSGCLALIENPDLTINELMEYIPGPDFPTAGIINGRKGIIDAYHTGRGRAVMRAKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E+K
Sbjct: 248 VEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +QS F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+   W   +++ +++   
Sbjct: 368 ELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I  
Sbjct: 428 DDAARPEWLEPEYGI-RDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIAA 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   L+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  ARG+ ++NIL L++GERIT I+P   + ED+      Y++ AT HG V++  L+
Sbjct: 607 PLASRTARGRPIVNILPLSEGERITAILPVREYAEDK------YIIMATSHGTVKKTALT 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708
            +     +G IA+ L   D+++ V+     NDI+L +  G+ VRF               
Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKLD 720

Query: 709 PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           P +   + A    GR + GVRGI L  G QV+S+ IV   + D                 
Sbjct: 721 PETGEEMIALRAMGRTATGVRGIKLEDGQQVVSL-IVPKGEGD----------------- 762

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              ILTV+E GFGKRT   ++   +R  
Sbjct: 763 -----------------------------------ILTVTENGFGKRTDLAEYPAKSRGT 787

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG+ +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  
Sbjct: 788 KGVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIR 845

Query: 885 TAKDERVVSVERIRE 899
           TA+DE+VV ++RI E
Sbjct: 846 TAEDEKVVGLQRIDE 860


>gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
 gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
          Length = 915

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/916 (44%), Positives = 571/916 (62%), Gaps = 84/916 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G EWN+ Y K AR+ 
Sbjct: 15  INIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELGNEWNRSYKKSARVV 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+S+R LL++GQGNFGSVDGD  AA RYTE R+ + 
Sbjct: 75  GDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDSAAAMRYTEVRMTRL 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV F PNYDGS +EP VL A+YPN+LVNG  GIAVGMATNIP HNLGEV
Sbjct: 135 ASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAVGMATNIPPHNLGEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D   A+ID+P++D  ALM+ I GPDFPTG  I G+ GI + Y TGRGS++IR  + IE 
Sbjct: 195 IDATCALIDDPELDPRALMQYIPGPDFPTGGSIHGQAGIVSGYETGRGSVIIRAKTVIET 254

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               +E I+V E+PYQVNKA ++E+IAELVREK++  I+DLRDESDR+G RVVIE+KR  
Sbjct: 255 RKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDESDREGMRVVIEIKRDH 314

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ADV+LNQL+++T++QS F +N +AL   +P   +L   L AF+  R EVV RRT + LN
Sbjct: 315 QADVVLNQLFKHTAMQSSFGINALALVDGRPVTLSLKAFLVAFLKHRREVVTRRTIFELN 374

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI---D 435
           KA+ RAH+L GLA+A+AN+D ++ +IR +     A+  LM   W    ++ ++      +
Sbjct: 375 KAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERWERGPVEAMLARALGEN 434

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D       +G   LS  Q +AIL++RL RLTGL  + I  E   +  EI     IL+S  
Sbjct: 435 DVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEEILKEIAYLKGILASDG 494

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L+ +I+QELL +K+    PRRT IVE + D    D I  E+MVVTVSH GY+KR P   
Sbjct: 495 VLMDVIRQELLEIKERYANPRRTLIVEAVGDFSIADLIPEEEMVVTVSHGGYIKRQPSLA 554

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQRRGGKG+S   ++DEDFV  +F+ STH ++  F+  G V+K KV+ +P GS  +RG
Sbjct: 555 YQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGRVFKLKVYEIPSGSRLSRG 614

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L L +GE++  I+P P  E+ W +  ++FAT+ G +++  LS++  I  +G  A
Sbjct: 615 KAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFATRRGLIKKTVLSNYANIRTTGIRA 674

Query: 676 MKLDSRDEILSVETCTQEND---------------------------ILLTTKLGQCVRF 708
           + L   D+++ V       D                           I+L  + G+ VRF
Sbjct: 675 INLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPEDESSADAAPGRIMLFAQGGKAVRF 734

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR S GVRG+ L   D VI++ ++                          D
Sbjct: 735 ADEKVR-RVGRVSQGVRGMRLKGEDGVIALTVI--------------------------D 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            E +  L                         LT++EKG+GKR+    +    R  +G+ 
Sbjct: 768 GEAVGQL-------------------------LTITEKGYGKRSDLSQYPTKGRGTQGVI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             DV   ++ G +V+   V++ D++++++D+GT++R  V+ IR+A RAT GV + + A+ 
Sbjct: 803 GMDVR--DKTGNVVSALVVDEQDEVMVITDQGTVLRTKVDSIRVAGRATMGVRVLNVAEG 860

Query: 889 ERVVSVERIRESEIVD 904
           ERVVSV R+ E+E VD
Sbjct: 861 ERVVSVARLAEAEEVD 876



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 75/140 (53%), Gaps = 8/140 (5%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRF 708
           T+ G  +R+ LS +    R  +  + +D RD+   ++S     +++++++ T  G  +R 
Sbjct: 778 TEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQGTVLRT 837

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            + +IRV AGR ++GVR +++A+G++V+S+A +    A+ +E   + +       L  GD
Sbjct: 838 KVDSIRV-AGRATMGVRVLNVAEGERVVSVARL----AEAEEVDAFDEEGEPIAPLTEGD 892

Query: 769 TEEITSLKNDSSVEGNISEE 788
                 + +D   + + SEE
Sbjct: 893 ALGEDGVADDGVADASASEE 912


>gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)]
 gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489]
 gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          G+   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGEGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/921 (44%), Positives = 575/921 (62%), Gaps = 100/921 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 34  ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 93

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 94  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 153

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 154 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 213

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R ++ 
Sbjct: 214 TEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRALAE 273

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 274 VETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 333

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 334 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 393

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 394 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 453

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  DG  YL+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 454 DDAARPEWLEPEFGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 512

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 513 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 572

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 573 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 632

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  +RG+ ++N+L L+ GERIT I+P   + ED+      Y++ AT +G V++  L+
Sbjct: 633 PLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 686

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------P 709
            +     +G IA+ L   D+++ V+    +++I+L +  G+ VRF              P
Sbjct: 687 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNP 746

Query: 710 I-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           +             +R   GR + GVRGI L +G +V+S+ +                  
Sbjct: 747 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVP----------------- 788

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                            K D ++                   LTV+E G+GKRT   ++ 
Sbjct: 789 -----------------KGDGAI-------------------LTVTENGYGKRTELSEYP 812

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ KG+ +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P N + I  R T+
Sbjct: 813 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 870

Query: 879 GVVIFSTAKDERVVSVERIRE 899
           GV I  TA DE+VV ++RI E
Sbjct: 871 GVTIIRTASDEKVVGLQRIDE 891


>gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ +FV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIASFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69]
 gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88]
 gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a]
 gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206]
 gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           S88]
 gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           ED1a]
 gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82]
 gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034]
 gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972]
 gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146]
 gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3]
 gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1]
 gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3]
 gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327]
 gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1]
 gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252]
 gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263]
 gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2]
 gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206]
          Length = 875

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845


>gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605]
 gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15]
 gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605]
          Length = 875

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845


>gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509]
          Length = 875

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845


>gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
 gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
          Length = 875

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20]
 gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
 gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A
 gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20]
 gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
          Length = 880

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/902 (46%), Positives = 582/902 (64%), Gaps = 43/902 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A ID  +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RI 897
           R+
Sbjct: 863 RV 864


>gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1]
 gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1]
          Length = 875

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/921 (44%), Positives = 575/921 (62%), Gaps = 100/921 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 34  ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 93

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 94  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 153

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 154 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 213

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R ++ 
Sbjct: 214 TEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRALAE 273

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 274 VETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 333

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 334 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 393

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 394 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 453

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  DG  YL+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 454 DDAARPEWLEPEFGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 512

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 513 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 572

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 573 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 632

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  +RG+ ++N+L L+ GERIT I+P   + ED+      Y++ AT +G V++  L+
Sbjct: 633 PLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 686

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------P 709
            +     +G IA+ L   D+++ V+    +++I+L +  G+ VRF              P
Sbjct: 687 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNP 746

Query: 710 I-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           +             +R   GR + GVRGI L +G +V+S+ +                  
Sbjct: 747 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVP----------------- 788

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                            K D ++                   LTV+E G+GKRT   ++ 
Sbjct: 789 -----------------KGDGAI-------------------LTVTENGYGKRTELSEYP 812

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ KG+ +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P N + I  R T+
Sbjct: 813 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 870

Query: 879 GVVIFSTAKDERVVSVERIRE 899
           GV I  TA DE+VV ++RI E
Sbjct: 871 GVTIIRTASDEKVVGLQRIDE 891


>gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
 gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A
 gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1]
 gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
          Length = 923

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/937 (43%), Positives = 570/937 (60%), Gaps = 108/937 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 254 SHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + +E+    G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G RVV
Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EVV R
Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   +  
Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VVT+
Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY  +
Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN----------------- 645
            + +P  S  ARG+ L+N+L L++GERIT ++    +    N                  
Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664

Query: 646 -----------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                                   Y+  AT  G V++  L  F +   SG IA+KL+  D
Sbjct: 665 VVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM    
Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                     I E   Q        ILT
Sbjct: 781 ------------------------------------------IPESGAQ--------ILT 790

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            SE+GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+GTL
Sbjct: 791 ASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +R  V+E+ ++ R T+GV +   A DE +V +ER++E
Sbjct: 849 VRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQE 885


>gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
 gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
          Length = 875

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T +DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTTEDENVVGLQRV--AEPVDE 845


>gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
          Length = 880

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/905 (46%), Positives = 585/905 (64%), Gaps = 49/905 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+DL    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P   + ED+      +VV AT
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA           L  D   DE                 + E+I
Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    ++ ++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 742 SDDNAEALLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VV
Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859

Query: 893 SVERI 897
           S+ER+
Sbjct: 860 SLERV 864


>gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1]
 gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1]
          Length = 890

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/902 (45%), Positives = 581/902 (64%), Gaps = 72/902 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I++ +I ++ALME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 REVINGCLAYIEDENISIEALMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 428 GDDAARPEWLDPQYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILSSAERLMEVIREELELMRDQFGDDRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI                                   RL  GD   + SL          
Sbjct: 723 GI-----------------------------------RLAEGD--RVVSLI--------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +  +E  I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 737 -------VPREEGAIMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+  +E V+E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRV--AEPVEE 845

Query: 906 AE 907
            E
Sbjct: 846 EE 847


>gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
 gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
          Length = 886

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/903 (46%), Positives = 559/903 (61%), Gaps = 72/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L+++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K +H +L DL K+TVDF  NYDG+ + P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252
           NL EVV GC+A++ +PD+ +D LME I GPDFPTGA+I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGAIINGRAGIIQAYRTGRGRIYVRAR 245

Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             V H EK   D   I+V EIPYQ+NKA ++E+IAELV+EK+I  I +LRDESD+ G RV
Sbjct: 246 AEVIHDEKRGKD--IIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG   DV+LN LY  T LQS+F +NMVAL   +P+   L  IL+AFV  R EVV 
Sbjct: 304 VIELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVDGQPKILNLKEILEAFVRHRREVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YLL KAR+R H+L GLAIA+AN+D V+ +I+ SP+   A+ +L+ RSW   D+  +
Sbjct: 364 RRTVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGM 423

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++   D +             DG  YLS  Q +AILELRL RLTGL  + + NE      
Sbjct: 424 LERAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLR 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L+ILS   RL  +I++EL  +  E    RRT I     D+  ED I  ED VVT+
Sbjct: 484 EIAEYLEILSDADRLKAVIREELEEIVTEYGDERRTEITASQHDLTVEDLITEEDRVVTI 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGG G+S   ++DEDFV  L I STH ++L FS+LG VY  K
Sbjct: 544 SHGGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVYWLK 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+++P+    +RG+ +IN+L L +GER+T+I+P    E      Y+  AT  G V++  L
Sbjct: 604 VYQIPLAGRNSRGRPMINLLPLEEGERVTSILPV---EDYTEGHYIFMATASGTVKKTAL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +    G  A++L+  D ++     T + D++L +  G+ VRF    +R   GR + 
Sbjct: 661 INFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAM-GRTAR 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L                                     GD  E+ SL       
Sbjct: 720 GVRGIKL-------------------------------------GDGHEMISLI------ 736

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I  E  +        +LTVSE G+GKRT   +F    R  KG+ A   S+ N  G LV
Sbjct: 737 --IPREGGR--------VLTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERN--GTLV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V D DQ++L+S++GTL+R   +EI +  R T+GV +  T  DE +VSVERI E E 
Sbjct: 785 GAVQVFDGDQLMLISNQGTLVRTRADEISVLGRNTQGVRVIRTKTDESLVSVERIEEPED 844

Query: 903 VDE 905
            DE
Sbjct: 845 DDE 847


>gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
 gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
          Length = 923

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/937 (43%), Positives = 570/937 (60%), Gaps = 108/937 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 254 SHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + +E+    G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G RVV
Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EVV R
Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   +  
Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VVT+
Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY  +
Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN----------------- 645
            + +P  S  ARG+ L+N+L L++GERIT ++    +    N                  
Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664

Query: 646 -----------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                                   Y+  AT  G V++  L  F +   SG IA+KL+  D
Sbjct: 665 VVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM    
Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                     I E   Q        ILT
Sbjct: 781 ------------------------------------------IPESGAQ--------ILT 790

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            SE+GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+GTL
Sbjct: 791 ASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +R  V+E+ ++ R T+GV +   A DE +V +ER++E
Sbjct: 849 VRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQE 885


>gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227]
          Length = 878

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469]
 gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia
           fergusonii ATCC 35469]
          Length = 878

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845


>gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 879

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/894 (45%), Positives = 575/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                         EG+I
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/896 (45%), Positives = 572/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     ++ + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPE 843


>gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 899

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/927 (44%), Positives = 579/927 (62%), Gaps = 98/927 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   GILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K +H LL DL K+TVDF PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A+I NP++ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  +
Sbjct: 187 LTEVVNGCLALIQNPELSILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 247 EIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 307 IKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR SP P  A+  L  RSW   ++K ++D 
Sbjct: 367 VFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLDK 426

Query: 434 IDDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             + +          +G  DG  ++SE Q +AIL+LRL +LTGL  + I  E  SL   I
Sbjct: 427 AGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL++  RL+ +I+ EL+ +K +    RRT I     D+  ED I  E++VVT+SH
Sbjct: 487 AELLHILATPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 547 EGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L   ERIT I+P   + ED+      Y+  AT  G V++  
Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDK------YIFMATAFGTVKKTP 660

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L+ + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF             
Sbjct: 661 LTAYSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAEETTVVDENG 720

Query: 709 -PI------SAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            P+        IR       GR + GVRGI + +G +V+S+ +                 
Sbjct: 721 NPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRVVSLIVP---------------- 764

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                             K D ++                   LTV+E G+GKRT   D+
Sbjct: 765 ------------------KTDGAI-------------------LTVTENGYGKRTLLEDY 787

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T
Sbjct: 788 PAKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNT 845

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVD 904
           +GV++  T  +E+VV ++RI E E+ +
Sbjct: 846 QGVILIRTIDEEQVVGLQRIEEIEVTE 872


>gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197]
 gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
 gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197]
 gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
          Length = 875

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+  ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 MEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
 gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
          Length = 875

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/893 (45%), Positives = 574/893 (64%), Gaps = 68/893 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   ++DEDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVEEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+ E VV ++R+ E
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEGENVVGLQRVAE 841


>gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86]
          Length = 875

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845


>gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739]
 gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739]
          Length = 875

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+  ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
 gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
          Length = 894

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
 gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
          Length = 894

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
 gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
          Length = 899

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/916 (44%), Positives = 570/916 (62%), Gaps = 93/916 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +H LL DL K+TVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 ARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A+I+NPDI +D L++ I GPDFPT A+I G+ GI+ AY TGRG + IR  + 
Sbjct: 188 NEVINGCLALINNPDITIDELIDYIPGPDFPTAAIISGKKGIEQAYKTGRGKVYIRAKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     +E I+V E+PYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E+K
Sbjct: 248 VETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVVEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  TS+Q++F +NMVAL+  +P+   L  +L AFV  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQPKLLNLKEMLHAFVVHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L+ R W+   ++ +++   
Sbjct: 368 DLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQSMLERTG 427

Query: 436 DSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +S+          +G  DG  +LS  Q +AILELRL RLTGL  + I  E   L   I E
Sbjct: 428 ESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQELLDLIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L ILSS  RLL +I+ EL   K++    RRT I     D+  ED I  ED+VVT+SH G
Sbjct: 488 LLHILSSPERLLEVIRDELALAKEQYGDERRTVITAAAHDISLEDLINEEDVVVTLSHEG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV++L
Sbjct: 548 YVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARGK +IN+L L   ERIT I+P  E E    N Y+  AT  G V++  L+ + 
Sbjct: 608 PLASRAARGKPIINLLPLEANERITAILPVREYEE---NKYIFMATAFGTVKKTPLTAYS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--------------- 711
           +   SG IA+ L+  D ++ V+     N+I+L +  G+ VRF  S               
Sbjct: 665 RQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDENGNLVLD 724

Query: 712 ----------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRGI + +G +V+S+ +                     
Sbjct: 725 ENGQPEIKFKGVRPM-GRTATGVRGIKMGEGQRVVSLIVP-------------------- 763

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                         KND S                   ILTV+E G+GKRT+  D+   +
Sbjct: 764 --------------KNDGS-------------------ILTVTENGYGKRTNLEDYPSKS 790

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ +G+ +  VS+ N  G +V    V +ND+I+L+S++GTL+R  V E+    R T+GV+
Sbjct: 791 RATQGVVSIKVSERN--GKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVGRNTQGVI 848

Query: 882 IFSTAKDERVVSVERI 897
           +  T  +E VV ++RI
Sbjct: 849 LIRTIDEELVVGLQRI 864


>gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103]
 gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103]
 gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355]
          Length = 880

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/902 (45%), Positives = 578/902 (64%), Gaps = 72/902 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR    
Sbjct: 188 REVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARGE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEAQFGI-REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATASGTVKKTGLQEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                                             +ND  V   +
Sbjct: 723 GIKLA---------------------------------------------QNDRVVSLIV 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             E        E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 738 PRE--------EGAILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D+DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+  +E V+E
Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVEE 845

Query: 906 AE 907
            E
Sbjct: 846 EE 847


>gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
 gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
          Length = 875

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845


>gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163]
 gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163]
          Length = 879

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/894 (45%), Positives = 574/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ DI L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 TEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                         EG+I
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841


>gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12]
          Length = 875

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I  PDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
 gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
          Length = 876

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/905 (46%), Positives = 560/905 (61%), Gaps = 69/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 12  VLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD + RMAQD+SLR  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 72  RIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF  NYDGS Q PVVL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 132 SKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSSGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A IDNP+ID+D LME I GPDFPTGA+I GR GI  AY TGRG I +R  + 
Sbjct: 192 REVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRARAE 251

Query: 256 -IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I   S  ++ I++ EIPYQ+NKA ++E+IAELV+EK++  I +LRDESD+ G RVVIEL
Sbjct: 252 VITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITELRDESDKDGLRVVIEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +RG   DV+LN LY  T LQS+  +NMVAL   +P    L+ +++AFV  R EVV RRT 
Sbjct: 312 RRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQPRTLNLLEMIEAFVRHRREVVTRRTV 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+R HVL GLAIA+ N+DE++ +I+ SP P  A+  L+ + W + ++  +++  
Sbjct: 372 YLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVAKPWQSGEVTGMLERA 431

Query: 435 -------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  DD     G  G+ Y LS  Q +AILELRL RLTGL  + +  E +   +EI  
Sbjct: 432 GEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHEKLLQEYSDKLVEIAG 491

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L+IL    RL  +I+ EL  + +E    R T I +   D+  ED I  ED VVT+SH G
Sbjct: 492 YLEILQDPDRLRQVIRDELKELVEEFGDDRLTEITDSTHDLSVEDLITEEDRVVTISHGG 551

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   LS Y+AQRRGG GRS   ++DEDFV  L I STH ++L FS LG VY  KV+ +
Sbjct: 552 YAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILCFSDLGKVYWLKVFHI 611

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L++GERIT+I+P    E      ++  AT  G V++  +  F 
Sbjct: 612 PLASRNARGRPMVNLLPLDEGERITSILPV---EGYEEGHFIFMATARGIVKKTDMQQFA 668

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +    G  A++L++ D ++         D++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 669 RQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQAVRAM-GRTARGVRG 727

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L    ++IS+ IV  AD+                                        
Sbjct: 728 IKLGDEHRLISL-IVPQADST--------------------------------------- 747

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        ILTVSEKG+GKRT + +F    R  KG+ A   +  N  G LV    
Sbjct: 748 -------------ILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMATTAKN--GPLVGAVQ 792

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDE 905
           V+  D+I+L+SD+GT +R  V EI    R T+GV +  T +DE++V + RI E  + V E
Sbjct: 793 VSTGDEIMLISDQGTAVRTRVEEISTLGRNTQGVRVIKTREDEKLVRLSRIVEDDDAVPE 852

Query: 906 AESTE 910
           AES E
Sbjct: 853 AESAE 857


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/895 (46%), Positives = 575/895 (64%), Gaps = 68/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+ C+A++DNP++ LD +MEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAIINGRAGIIQGYRTGKGRVVIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE     +R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR   ADVILN LY +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 EIKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ ++W    +K +++
Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G SD    LS  Q +AILELRL RLT L +D I  E   L I I
Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ ELL +K +    RRT I     D+  ED I  E++VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y+AQRRGGKG+S   ++DEDFV+ L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  +RG+ +INIL L +GE I  ++P  E +  +   YV  AT++G V++  L+ 
Sbjct: 606 QLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGF---YVFMATRNGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ LD  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRP-TGRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + +   VIS+ IV H +                                       
Sbjct: 722 RGIRIEEDQAVISL-IVAHPNGT------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERN--GKVVRS 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             VND+D+ +L++DKGTL+R  V+E+ I  R T+GV + + +  E VV +++I +
Sbjct: 787 VQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQKIED 841


>gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
 gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
          Length = 875

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
 gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
          Length = 894

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5]
 gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5]
 gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1]
 gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3]
          Length = 875

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
 gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
          Length = 894

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/920 (45%), Positives = 576/920 (62%), Gaps = 87/920 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K
Sbjct: 6   KEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GCVA+I +P I +D LM  I GPDFPT A+I GR GI++AY TGRG I +R  
Sbjct: 186 NLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE  S  +E IVV EIPYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE
Sbjct: 246 AEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR  SA+V+LN LY  T LQ++F +NMVAL+  +P+ F L   L+ F+  R EVV RRT
Sbjct: 306 VKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P  A++ L+ + W+  D+  +++ 
Sbjct: 366 VFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQMLER 425

Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I
Sbjct: 426 AGDDAARPDWLMPEFGI-RDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLEII 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL  V+DE    RRT I     D++ ED I +ED+VVT+S 
Sbjct: 485 AELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIEQEDVVVTLSR 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L+ Y AQRRGG+G+S   M+DEDF+  L + +TH  +L FS+ G +Y  KV+
Sbjct: 545 EGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL L + ERIT I+P  E E      +V+ AT +G V++  LS 
Sbjct: 605 QLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGK---FVLMATANGTVKKTDLSL 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------P 709
           + +   SG IA+ L+  DE++ V+    ++DI+L +  G+ VRF               P
Sbjct: 662 YSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRDP 721

Query: 710 ISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            +   + A    GR + GVRGI L  G +V+S+ +                         
Sbjct: 722 ETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVP------------------------ 757

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                     K D  +                   LT +E GFGKRT   D+   +R+ +
Sbjct: 758 ----------KGDGPI-------------------LTATENGFGKRTPLEDYPAKSRATQ 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  G +V    V++ ++I+L+SD+GTL+R  V E+ +  R T+GV +  T
Sbjct: 789 GVVSIKVSERN--GKVVGAVQVDETNEIMLISDQGTLVRTRVGEVSVVGRNTQGVRLIRT 846

Query: 886 AKDERVVSVERIRESEIVDE 905
            + E VV ++RI E E + E
Sbjct: 847 VEGEHVVGLQRIEEVEELQE 866


>gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
 gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
          Length = 895

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ +                
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV---------------- 761

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                    EG+               +LTV+E G+GKRTS  +
Sbjct: 762 ----------------------PKTEGD---------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
 gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
          Length = 894

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/896 (45%), Positives = 571/896 (63%), Gaps = 70/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMV L+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVGLSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     ++ + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                          GD E               
Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPE 843


>gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 879

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/917 (44%), Positives = 578/917 (63%), Gaps = 83/917 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 SEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAE 247

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFVCHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LAIA+AN+D V+ +IR +  P  A+  L+ + W   ++  +++  
Sbjct: 368 FELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAMLEQA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEPEYGI-HEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL +  RL+ +I++ELL++K++ +  RRT + E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILENPERLMEVIREELLAIKEQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S    ++EDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNKGKMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E   N   +  AT  G V++ KLS+F
Sbjct: 607 LPEASRGARGRPIVNLLPLGQNERITAILPVREYEDGLN---IFMATASGIVKKTKLSEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------ISA 712
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF              +  
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVKG 723

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI L+ GD+V+S+ I                          G+ E +
Sbjct: 724 VRAM-GRTATGVRGIKLSAGDKVVSLIIP------------------------RGEGEIL 758

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T  +N                             G+GKRT+  ++   +R+ +G+ +  V
Sbjct: 759 TVTEN-----------------------------GYGKRTAESEYPTKSRATQGVISIKV 789

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G ++    V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV
Sbjct: 790 SERN--GNVIGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVV 847

Query: 893 SVERIRESEIVDEAEST 909
            ++R+ E +  +E  +T
Sbjct: 848 GLQRVAEPDDEEEDNNT 864


>gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 889

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/901 (45%), Positives = 569/901 (63%), Gaps = 72/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGREGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQ++F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S +  ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVMTMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ L+N+L L++GE ITT++P    E      Y+  AT +G V++  L
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDEGEYITTMLPV---EEYTEGHYIFMATANGTVKKTPL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR + 
Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ LA+G ++ISM                                            
Sbjct: 721 GVRGMRLAEGQKLISML------------------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I EE  Q        ILT SE+GFGKRT+  +F    R G+G+ A   ++ N  G LV
Sbjct: 738 --IPEEGSQ--------ILTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERN--GRLV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SE 901
               V D ++I+L+SD+GTL+R  V+E+    R T+GV +   A DE +V +ER++E SE
Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQEPSE 845

Query: 902 I 902
           I
Sbjct: 846 I 846


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/921 (44%), Positives = 574/921 (62%), Gaps = 100/921 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I +P + ++ LM+ I GPDFPT A+I GR GI +AY TGRG  ++R ++ 
Sbjct: 188 TEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  YL+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPEYGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PLS Y+AQRRGGKG+    ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  +RG+ ++N+L L  GERIT I+P   + ED+      Y++ AT +G V++  L+
Sbjct: 607 PLASRTSRGRPIVNLLPLADGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------P 709
            +     +G IA+ L   D+++ V+    +++I+L +  G+ VRF              P
Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNP 720

Query: 710 I-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           +             +R   GR + GVRGI L +G +V+S+ +                  
Sbjct: 721 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVP----------------- 762

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                            K+D +                   ILTV+E G+GKRT   ++ 
Sbjct: 763 -----------------KDDGA-------------------ILTVTENGYGKRTELSEYP 786

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ KG+ +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P N + I  R T+
Sbjct: 787 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 844

Query: 879 GVVIFSTAKDERVVSVERIRE 899
           GV I  TA DE+VV ++RI E
Sbjct: 845 GVTIIRTASDEKVVGLQRIDE 865


>gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
 gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
          Length = 894

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/923 (43%), Positives = 572/923 (61%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ +                
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV---------------- 761

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                    EG+               +LTV+E G+GKRTS  +
Sbjct: 762 ----------------------PKTEGD---------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933]
 gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 875

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/899 (45%), Positives = 577/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++  ME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE  +V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83]
          Length = 875

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+S  G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSLQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
 gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
          Length = 903

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/936 (44%), Positives = 580/936 (61%), Gaps = 99/936 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEPQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L + ERIT I+P  E  +   + ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI-------- 710
           F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF      P+        
Sbjct: 662 FSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPV 721

Query: 711 -----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                        +R   GR + GVRG+ LA GDQV+S+ +                   
Sbjct: 722 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIVP------------------ 762

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                           KND  V                   LTV+E G+GKRT   ++  
Sbjct: 763 ----------------KNDGDV-------------------LTVTENGYGKRTVLSEYPT 787

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R  +G+ +  VS+ N  G++V    V D D+ ++++D GTL+R  V E+    R T+G
Sbjct: 788 KGRGTQGVVSIKVSERN--GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQG 845

Query: 880 VVIFSTAKDERVVSVERIRESEIVD-----EAESTE 910
           V +  TA+DE VV ++RI E E  D     EA++TE
Sbjct: 846 VTLIRTAEDESVVGLQRIDEVEETDLPEGEEADATE 881


>gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 889

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/914 (44%), Positives = 572/914 (62%), Gaps = 78/914 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL DL K+TVDF PNYDGS QEP+V+  R PN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++ NP+  +D LMEII  PDFPTG +I G  G+K+ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLKNPEASIDELMEIIPAPDFPTGGIIYGINGVKDGYRTGRGRVVMRAKCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI+LKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIDLKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F++ R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALINGQPKLCNLKDLIQVFISHRREVVTRRTVFTL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL---- 433
            KAR+R HVL GLA+A+AN+DE + IIR +P P  A+ ELM R+W++S +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSLVREMLTRAHAD 430

Query: 434 -----IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 DD        S+ +GSDG   LSE QT+ IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDKIVAEYKEVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
            EI + LDIL+   R+  II QEL ++K E        RR+ I     D+  ED I   D
Sbjct: 491 AEIDDLLDILARPERVSTIIGQELAAIKLEFGQTKLGARRSHIEHSSFDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  +L FS  G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSDRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++    ++ S+  + YV  AT  G 
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRSFPADQYVFMATSMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L DF    + G IA+ LD  D ++       ++D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVRG++L +G  VI+M                         L++ D E      
Sbjct: 731 -GRNARGVRGMNLEEGQGVIAM-------------------------LVAEDGE------ 758

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                Q +LT ++ GFGKRTS  ++    R  KG+ A   S+ N
Sbjct: 759 ---------------------QSVLTATQMGFGKRTSISEYTRHGRGTKGMIAIQQSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++D+G L+R  V+EIR   RAT+GV +    +  ++  ++R
Sbjct: 798 --GKVVAATLVHADDEIMLITDRGVLVRTRVSEIREMGRATQGVTLIGLDEGSQLSGLQR 855

Query: 897 IRESE-IVDEAEST 909
           I E++  +D+ E T
Sbjct: 856 IVENDATLDDTEKT 869


>gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
 gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
          Length = 866

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/911 (45%), Positives = 576/911 (63%), Gaps = 82/911 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ALM  I GPDFPTGA+I G  GI  AY TGRG I +R  + 
Sbjct: 188 TEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGRGIAEAYRTGRGKIYLRARAE 247

Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +    KT   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G RVVI
Sbjct: 248 VVIDAKTQ--RETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL++FV+ R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQPKILPLKEILQSFVSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  L +A+A++D ++ +IR +P    A+  LM+ +W  SD+ +++ 
Sbjct: 366 TMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLK 425

Query: 433 LIDDSSYTIG----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                  TIG                 D + +L+E Q +AIL+LRL +LTG+  D + +E
Sbjct: 426 RSSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLDE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L I+I E + IL +  RL+ IIK EL ++K++   PRRT I+   L++ +ED I +E
Sbjct: 486 YKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDPRRTNIIVNNLEINNEDLINQE 545

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D+VVT+SH GYVK  PL+ Y AQRRGGKG+S   ++ EDF+  L + +TH ++L FSS G
Sbjct: 546 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHDTILCFSSKG 605

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +Y  KV++LP  S  ARG+ +IN+L L + ERIT I+P  E ++     +V  AT  G 
Sbjct: 606 SLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVREYDAGH---HVFMATACGI 662

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L  F +  + G IA+ L+  DE++ V      N+++L +  G+ VRF  S +R  
Sbjct: 663 VKKTALDCFSRPRKDGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRFSESKVRSV 722

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G+RGI L   D+++S+ I                                    
Sbjct: 723 -GRKAAGMRGIKLNDDDRLVSLII------------------------------------ 745

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                EG I               LT+++ G+GKRT + ++    R+ KG+ +   S+ N
Sbjct: 746 --PQKEGEI---------------LTITKNGYGKRTLAEEYPTKGRATKGVLSIKTSERN 788

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V  +DQI++++D GTL+R  V+EI +  R T+GV +  TAK+E VV ++R
Sbjct: 789 --GNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRLIRTAKNEHVVGLQR 846

Query: 897 IRES--EIVDE 905
           + E   +IV+E
Sbjct: 847 VAEQDDDIVNE 857


>gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
 gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
          Length = 891

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/920 (45%), Positives = 576/920 (62%), Gaps = 94/920 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A+I NPD+ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  + 
Sbjct: 188 TEVINGCLALIVNPDLTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRARAD 247

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE  + +G RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 248 IETDEKTG-RETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 307 IKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID- 432
            + L KARDRAH+L GLAIA+AN+D ++ +IR SP P  A+  L  RSW   ++K +++ 
Sbjct: 367 VFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLEK 426

Query: 433 -----------LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                      L DD       DG  ++SE Q +AIL+LRL +LTGL  + I +E  +L 
Sbjct: 427 AGEANVARPDWLADDLGI---RDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLL 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L IL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  E++VVT
Sbjct: 484 DLIAELLHILASPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  
Sbjct: 544 LSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWL 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S  ARGK ++N+L L   ERIT I+P  E E    + Y+  AT  G V++  
Sbjct: 604 KVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYEE---DKYIFMATAFGTVKKTP 660

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP------------ 709
           L+ + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF             
Sbjct: 661 LTAYSRQRASGIIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAEESAVVDENG 720

Query: 710 -----ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                   +R   GR + GVRGI +    +V+S+ +                        
Sbjct: 721 NPEIRFKGVRPM-GRTATGVRGIKMTDEQRVVSLIVP----------------------- 756

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                      K D ++                   LTV+E G+GKRT   D+   +R+ 
Sbjct: 757 -----------KTDGAI-------------------LTVTENGYGKRTQLEDYPSKSRAT 786

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +G+ +  VS+ N  GA+V    V+DND+I+L+S++GTL+R  VNE+    R T+GV++  
Sbjct: 787 QGVVSIKVSERN--GAVVGAVQVDDNDEIMLISNRGTLVRTRVNEVSTVGRNTQGVILIR 844

Query: 885 TAKDERVVSVERIRESEIVD 904
           T  +E+VV ++RI E E+ +
Sbjct: 845 TIDEEQVVGLQRIEEIEVTE 864


>gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
 gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
          Length = 894

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/923 (43%), Positives = 572/923 (61%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG   L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 894

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/923 (43%), Positives = 572/923 (61%), Gaps = 100/923 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ +                
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV---------------- 761

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                    EG+               +LTV+E G+GKRTS  +
Sbjct: 762 ----------------------PKTEGD---------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865


>gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
 gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
          Length = 875

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/899 (45%), Positives = 577/899 (64%), Gaps = 70/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845


>gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
 gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
          Length = 864

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/904 (44%), Positives = 568/904 (62%), Gaps = 71/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 18  KETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 78  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 137

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATNIP H
Sbjct: 138 RMARIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPH 197

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+  C+A++ NP+  +D L+EII  PDFPT  +I G  G++  Y TGRG +V+RG 
Sbjct: 198 NLNEVIAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTVGVREGYRTGRGRVVMRGR 257

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H+E    G+R+ ++V E+PYQVNK   +EKIAELV EK+I  I+DLRDESD+ G RVVI
Sbjct: 258 THVEDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVI 317

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EVV RR
Sbjct: 318 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVVTRR 377

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P  A+RELM R+W +  +++++ 
Sbjct: 378 TVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVEEMLK 437

Query: 433 --LIDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              ++ S       ++ +  DG   LS+VQ + IL++RL RLTGL +D I NE   +   
Sbjct: 438 RAAMEASRPEGLAVNFGLTPDG-YKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEIMDV 496

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL+   R+  II +EL ++ ++    RR+ IV    D+  ED I  +D+VVT+S
Sbjct: 497 IADLLDILARSERVTQIIVEELTAILNQFGDKRRSEIVHNAQDLSLEDLITPQDVVVTLS 556

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY  KV
Sbjct: 557 HTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKV 616

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662
           + +P GS  +RGK ++N+  L  GE+I  I+P  E DE    N +V  AT  G V++  L
Sbjct: 617 YEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFDE----NHFVFMATAKGTVKKTAL 672

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           ++F    RSG IA+ LD  D ++  E     NDI+L +  G+ V F    +R   GR + 
Sbjct: 673 TEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPM-GRAAR 731

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L    QVIS+ I   AD D                                   
Sbjct: 732 GVRGMKLQGKQQVISLLI---ADND----------------------------------- 753

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +Q +L  +E G+GKRT   DFR S R  +G++A   S+ N  G +V
Sbjct: 754 --------------KQTVLVATENGYGKRTVLADFRHSGRGTQGVKAIATSERN--GIVV 797

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V D+D+I+L++  G LIR  V EIR   RAT+GV + +  + E++  +E++ E++ 
Sbjct: 798 GARLVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKVVETDD 857

Query: 903 VDEA 906
            +EA
Sbjct: 858 DNEA 861


>gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60]
          Length = 878

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/894 (45%), Positives = 573/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 IEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYTQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++   
Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLARA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ IV H                                          
Sbjct: 723 GIKLAGEDRVVSL-IVPHG----------------------------------------- 740

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKR+   ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 741 -----------EGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E
Sbjct: 788 QVEDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVE 841


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/899 (45%), Positives = 566/899 (62%), Gaps = 72/899 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH +L DL K+TVDF PNYDGS Q PVVL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A +DN DI +D LME I GPDFPT A+I GR GI  AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAAIINGRAGILEAYRTGRGRIYIRAR 245

Query: 254 SHIE---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             IE   KTS  +E IV+TEIPYQVNKA ++EKIAELV+EK++  I +LRDES ++G RV
Sbjct: 246 YEIEQDKKTS--KETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG +ADV++N L+  T L+++F +NMVAL   +P+   L   ++ FV  R EVV 
Sbjct: 304 VIELRRGENADVLMNNLFALTPLETVFGINMVALINGEPKLLNLKDCIECFVRHRREVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L G A+A+AN+D V+ +I+ S     A+  LM + W    +  +
Sbjct: 364 RRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTGM 423

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         DD +   G  +G  YLSEVQ ++IL+LRL +LTGL  + I +E  S+  
Sbjct: 424 LERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSIIE 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L+IL +  RL+ +I++EL +V++E    R T I     D+   D I  EDMVVT+
Sbjct: 484 QIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVVTL 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL  Y+AQ+RGGKG++   +RDEDFV  L I ++H ++L F+S G +Y  K
Sbjct: 544 SHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYWLK 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  +RG+ ++NIL L + ERITT++P  E  +   + YV  AT+ G V++  L
Sbjct: 604 TYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTA---DHYVFMATRQGTVKKTPL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +   SG IA+ LD  D ++       + D++L +  G+ +RF    +R   GR + 
Sbjct: 661 ENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPM-GRTAR 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LA+G  V+S+ I+   DA                                    
Sbjct: 720 GVRGIRLAQGQTVVSL-IIPQEDA------------------------------------ 742

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT S KG+GKRT+  +F +  R G+G+ A   S+ N  G LV
Sbjct: 743 ----------------YILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN--GDLV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +   V   DQ++L+S++GTL+R   +E+ I  R T+GV +   ++ E +V VERI E E
Sbjct: 785 SAVQVISGDQLMLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPE 843



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 19/214 (8%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+ PL  +   R    G   + + + D +    I      V+ FSS G  
Sbjct: 646 VFMATRQGTVKKTPLENFSRPR--SSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKA 703

Query: 599 --YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             + E   R P+G   ARG   +  + L QG+ + +++  P++++     Y++ A++ G 
Sbjct: 704 IRFNEDDVR-PMGR-TARG---VRGIRLAQGQTVVSLI-IPQEDA-----YILTASRKGY 752

Query: 657 VRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S+F    R G+  IA++   R+ +++S       + ++L +  G  VR     +
Sbjct: 753 GKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISGDQLMLISNQGTLVRTRSDEV 812

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
            +  GRN+ GVR I L++ + ++ +  +   + D
Sbjct: 813 SIV-GRNTQGVRLIRLSESEDLVGVERIAEPEED 845


>gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
 gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
          Length = 877

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/901 (45%), Positives = 578/901 (64%), Gaps = 70/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+                                             NDS V   I 
Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    
Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846

Query: 907 E 907
           E
Sbjct: 847 E 847


>gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
 gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
          Length = 877

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/901 (45%), Positives = 578/901 (64%), Gaps = 70/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+                                             NDS V   I 
Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    
Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846

Query: 907 E 907
           E
Sbjct: 847 E 847


>gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A
 gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum]
          Length = 878

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/894 (45%), Positives = 575/894 (64%), Gaps = 71/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL + K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            + + SG IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                         EG+I
Sbjct: 722 GINLQGEDRVVSLII--------------------------------------PRGEGDI 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E
Sbjct: 787 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 840


>gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 904

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/912 (44%), Positives = 567/912 (62%), Gaps = 87/912 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP HN+
Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+NPD+ ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  + 
Sbjct: 188 NEVVSGCLALIENPDLTINELMEYIPGPDFPTAAIINGRKGIIDAYHTGRGRAVMRAKAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E+K
Sbjct: 248 VETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+   W    ++ +++   
Sbjct: 368 ELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I  
Sbjct: 428 DDAARPEWLEPEYGI-RDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIAA 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   L+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++NIL L++GERIT I+P  E     ++ Y++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNILPLSEGERITAILPVRE---YADDKYIIMATAHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
               +G IA+ L   D+++ V+    E++I+L +  G+ VRF               P +
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              V A    GR + GVRGI L    +V+S+ +                           
Sbjct: 724 GEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVP-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                   K+D +                   ILTV+E G+GKRT   ++   +R+ KG+
Sbjct: 758 --------KDDGA-------------------ILTVTENGYGKRTDLSEYPAKSRATKGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  +S+ N  GA+V    V +ND+I+L+SDKGTL+R P   +    R T+GV I  TA+
Sbjct: 791 VSIKISERN--GAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRTAE 848

Query: 888 DERVVSVERIRE 899
           +E+VV ++RI E
Sbjct: 849 EEKVVGLQRIDE 860


>gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
 gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
          Length = 884

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/905 (45%), Positives = 567/905 (62%), Gaps = 72/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S +  ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVVAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPETLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + ILSS  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ L+N+L L+  E ITT++P    E      ++  AT  G V++  L
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDSDEYITTMLPV---EEYTEGHFIFMATAKGTVKKTPL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR + 
Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L +G ++ISM                                            
Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A   +  N  G LV
Sbjct: 738 --IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GRLV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SE 901
               V D ++I+L+SD+GTL+R  V E+    R T+GV +   AKDE++V +ER++E SE
Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQEPSE 845

Query: 902 IVDEA 906
           +  EA
Sbjct: 846 VEGEA 850


>gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4]
 gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688]
 gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4]
 gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688]
          Length = 848

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/902 (44%), Positives = 565/902 (62%), Gaps = 69/902 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP+  +D L++II  PDFPT  +I G  G+K  Y TGRG +V+RG 
Sbjct: 186 NLNEVVDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTLGVKEGYRTGRGRVVMRGR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H+E    G+R+ +++ E+PYQVNK  ++EKIAELV +K+I  I+DLRDESD+ G RVVI
Sbjct: 246 THVEDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV+ RR
Sbjct: 306 ELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P  A++ LM R+W +  +++++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVEEMLK 425

Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    D  S   G     Y LS+VQ + IL++RL RLTGL +D I NE   +   I
Sbjct: 426 RAAMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL+   R+  +I  EL +++ +    RR+ IV    D+  ED I  +D+VVT+SH
Sbjct: 486 ADLLDILAKPERVTQMIVDELAAIRQQFGDERRSEIVHNAQDLSLEDLITPQDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY  KV+
Sbjct: 546 TGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLS 663
            +P GS  +RGK ++N+  L  GE+I  I+P  E DE    N ++  AT  G V++  L 
Sbjct: 606 EVPQGSRISRGKPIVNLFPLEDGEKINAILPVKEFDE----NHFIFMATAQGTVKKTALV 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    R+G IA+ LD  D ++  E     NDI+L +  G+ V F    +R   GRN+ G
Sbjct: 662 EFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRNTRG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L    +VIS+                         LI+ D               
Sbjct: 721 VRGMKLMAKQRVISL-------------------------LIAED--------------- 740

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +Q +L  +E G+GKRT   DFR S R  +G++A   S+ N  G++VA
Sbjct: 741 ------------DKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSERN--GSVVA 786

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+D D+I+L++  G LIR  V EIR   RAT+GV + +  ++E++  +E++ E++  
Sbjct: 787 ARLVSDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVETDDA 846

Query: 904 DE 905
           DE
Sbjct: 847 DE 848


>gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3]
 gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 897

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/918 (44%), Positives = 568/918 (61%), Gaps = 89/918 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A+I++P + ++ LME I GPDFPT A++ GR GI +AY TGRG  V+R  + 
Sbjct: 188 TEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAAIVNGRKGIIDAYKTGRGRAVMRARAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+ + W    +K +++   
Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  D   +L+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 428 DDAARPEWLEPEFGI-RDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEVIAA 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L ILSS  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLLILSSPQRLMEVITEELHEVLENFGDKRRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L++GERIT I+P  E     ++ Y++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSEGERITAILPVRE---YADDKYIIMATSHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
               +G IA+ L   D+++ V+     +DI+L +  G+ VRF               P +
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARNAETGEVKIDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              V A    GR + GVRGI L  G  V+S+ +                           
Sbjct: 724 GEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVP-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                   K D ++                   LTV+E G+GKRT+  ++   +R  KG+
Sbjct: 758 --------KEDGAI-------------------LTVTENGYGKRTALSEYPAKSRGTKGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  GA+V    V DND+I+L+SDKGTL+R P   +    R T+GV I  TA+
Sbjct: 791 VSIKVSERN--GAVVGAVQVGDNDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRTAE 848

Query: 888 DERVVSVERIRESEIVDE 905
           DE+VV ++RI   EI DE
Sbjct: 849 DEKVVGLQRI--DEIQDE 864


>gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
 gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
          Length = 899

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/924 (44%), Positives = 579/924 (62%), Gaps = 94/924 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A+I NP++ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  + 
Sbjct: 188 TEVVNGCLALIQNPELTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRARAD 247

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE  + +G RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 248 IETDEKTG-RETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 307 IKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L  R W   ++K ++D 
Sbjct: 367 VFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLDK 426

Query: 434 IDDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             + +          +G  DG  Y+SE Q +AIL+LRL +LTGL  + I  E  SL   I
Sbjct: 427 AGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLELI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL++  RL+ +I+ EL+ +K++    RRT I     D+  ED I  E++VVT+SH
Sbjct: 487 AELLFILANPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLINEENVVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 547 EGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L   ERIT I+P  + E   ++ Y+  AT  G V++  L+ 
Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVRDYE---DDKYIFMATAFGTVKKTPLTA 663

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------PI 710
           + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF              P+
Sbjct: 664 YSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETAVVDENGNPV 723

Query: 711 ------SAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                   IR       GR + GVRGI +    +V+S+ +                    
Sbjct: 724 LDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRVVSLIVP------------------- 764

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                          KND +                   ILTV+E G+GKRT   D+   
Sbjct: 765 ---------------KNDGA-------------------ILTVTENGYGKRTQLEDYPSK 790

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T+GV
Sbjct: 791 SRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQGV 848

Query: 881 VIFSTAKDERVVSVERIRESEIVD 904
           ++  T  +E+VV ++RI E E+ +
Sbjct: 849 ILIRTIDEEQVVGLQRIEEIEVTE 872


>gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c]
 gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c]
          Length = 897

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/910 (44%), Positives = 570/910 (62%), Gaps = 87/910 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K A
Sbjct: 8   ILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H LL DL K+TVDF PNYDG+   P VL  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 AKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ AY TGRG I +R  + 
Sbjct: 188 TEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEAYRTGRGKIYMRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +E IVV EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+V+E+K
Sbjct: 248 IEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T +Q++F +NMVAL+  +P+ F L+ IL+AFV  R EVV RRT +
Sbjct: 308 RNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLEILQAFVLHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P  A+  L  + W   D+ D+++   
Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWALGDVSDMLERAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           + +         + I  DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I E
Sbjct: 428 NDAARPDWLEPEFGI-RDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++DE    RRT I     D++ ED I RE++VVT+S  G
Sbjct: 487 LLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVVVTLSREG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   L+ Y +QRRGGKG+S   M++EDF+  L + +TH  +L FS+ G +Y  KV++L
Sbjct: 547 YVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++NIL L   ERIT I+P  E E      YV+ AT +G V++  L  + 
Sbjct: 607 PLASRNARGRPIVNILPLEANERITAILPIQEFEEGK---YVLMATANGTVKKTALVQYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
           +   +G IA+ L+  DE++ V+     +DI+L +  G+ VRF               P +
Sbjct: 664 RPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              + A    GR + GVRGI L  G +V+S+ IV   D                      
Sbjct: 724 GEEILALRPMGRTATGVRGIRLQDGQKVVSL-IVPQGDG--------------------- 761

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           ILT +E GFGKRT   D+   +R+ +G+
Sbjct: 762 -------------------------------AILTATENGFGKRTPVEDYPAKSRATQGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  G +V    VND+D+I+L+SD+GTL+R  V E+    R T+GV +  T +
Sbjct: 791 VSIKVSERN--GKVVGAVQVNDSDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLIRTGE 848

Query: 888 DERVVSVERI 897
           DE VV ++RI
Sbjct: 849 DEHVVGLQRI 858


>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
          Length = 878

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/902 (45%), Positives = 576/902 (63%), Gaps = 72/902 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+S+ +                          G+   +T+ +N        
Sbjct: 723 GIRLGEGDSVVSLIVP------------------------RGEGAILTATQN-------- 750

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                                G+GKRT+  ++   +R+ KG+ +  V+  N  G +V   
Sbjct: 751 ---------------------GYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDD 845

Query: 906 AE 907
            E
Sbjct: 846 EE 847


>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
 gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
          Length = 879

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/899 (44%), Positives = 571/899 (63%), Gaps = 70/899 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK Y K ARI 
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H +L+DL K+TVDF PNYDGS  EP+V+ AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE- 257
           + GC+A+++NP + ++ L+  I  PDFPT  +I G TG++  Y TGRG +++R  +H E 
Sbjct: 191 IAGCLALLENPALSIEDLIAYIPAPDFPTAGLIYGMTGVREGYQTGRGRVIMRARTHFED 250

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            + S  R+ ++V EIPYQVNK +++EKIAELV EK+I  I+D+RDESD+ G R+VIELKR
Sbjct: 251 MEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIELKR 310

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+ F++ R EV+ RRT Y 
Sbjct: 311 GEVGEVILNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLSHRREVITRRTVYE 370

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD-LIDLID 435
           L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W ++ +++ L+    
Sbjct: 371 LRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVVEEMLVRAAS 430

Query: 436 DSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D+S   G       S     LS+ Q +AILELRL RLTGL +D I  E   +  +I + L
Sbjct: 431 DASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKILDLL 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R+  II  EL++++++    RR+ I+    ++  ED I  +DMVVT+SH GY+
Sbjct: 491 DILAKPERITEIIVTELVAIREQFGDERRSEIILQTHELSLEDLITPQDMVVTLSHGGYI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PL+ YRAQRRGG+G+    ++DEDFV  LF+ +TH  +L FS+ G  Y  KV+  P 
Sbjct: 551 KAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCYWLKVYEAPQ 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  +RGK ++N+  L +GERI  ++P  E     ++ ++  AT+ G V++  LSDF   
Sbjct: 611 GSRVSRGKPIVNLFPLEEGERINAVLPVKE---FADDKFIFMATRAGTVKKTPLSDFSNP 667

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IA+ L   D ++ VE  T ++DI+L +  G+ V F    +R   GR + GVRG+ 
Sbjct: 668 RKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPM-GRGARGVRGMK 726

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  G  VIS+   L A++D                                         
Sbjct: 727 LQAGQAVISL---LVAESD----------------------------------------- 742

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +Q +L  +E GFGKRT   DFR S R  +G++A   S+ N  G ++    V+
Sbjct: 743 --------QQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERN--GVVIGAKLVD 792

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           DND+++L++  G LIR  V+EIR   RAT+GV + S    E++  +E++ ES  V EAE
Sbjct: 793 DNDEVMLITTGGVLIRTRVSEIRGMGRATQGVTLISLDDGEKLAGLEKVAES--VAEAE 849


>gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli]
          Length = 878

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/902 (45%), Positives = 579/902 (64%), Gaps = 73/902 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVRG
Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+V+S+ +                          GD   +T+ +N         
Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                               G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    
Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788

Query: 847 VNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V+D DQ   I++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E V
Sbjct: 789 VDDCDQIMMIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPV 846

Query: 904 DE 905
           DE
Sbjct: 847 DE 848


>gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22]
 gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22]
          Length = 877

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/901 (45%), Positives = 578/901 (64%), Gaps = 70/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+                                             NDS V   I 
Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    
Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846

Query: 907 E 907
           E
Sbjct: 847 E 847


>gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7]
 gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7]
          Length = 921

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/948 (43%), Positives = 572/948 (60%), Gaps = 108/948 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + +E  +  G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G RVV
Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EVV R
Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   +  
Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VVT+
Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY  +
Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN------------------ 644
            + +P  S  ARG+ L+N+L L++GERIT ++    +    N                  
Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664

Query: 645 ----------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                                   Y+  AT  G V++  L  F +   SG IA+KL+  D
Sbjct: 665 VVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM    
Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                     I E   Q L   E     
Sbjct: 781 ------------------------------------------IPESGAQILTASE----- 793

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
              +GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+GTL
Sbjct: 794 ---RGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +R  V+E+ ++SR T+GV +   A DE +V +ER++E    D+ E  E
Sbjct: 849 VRTRVDEVSLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPE 896


>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
 gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
          Length = 848

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/883 (44%), Positives = 567/883 (64%), Gaps = 60/883 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR+
Sbjct: 10  AVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD PAA RYTE R+++
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMKQ 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL DL K+TV F PNYD S  EP VL A++PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 130 LTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNLGE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +A+I NP +  + L+E++ GPDFPTG  I GR GI + YATGRG I IR  +H+E
Sbjct: 190 IIDAIIALIHNPALSYEELLELVPGPDFPTGGTIYGRQGIIDGYATGRGVIQIRAKAHVE 249

Query: 258 KTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +   DRE IVVTEIPYQVNKA ++  IAELV+EK+I  I+DLRDESDR G R+VI+LK+
Sbjct: 250 NSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVIDLKK 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +A+V+LNQLY++T +Q+ F +NM+A+   +P+  +L  ++  F+  R E+V +RT + 
Sbjct: 310 DENAEVLLNQLYKHTQMQTSFGINMLAIVHNRPKLMSLAEMMHYFIEHRREMVTKRTLFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+  LD V+ +IR S  P  A+  LM+  +   D    ++L   
Sbjct: 370 LKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNLPRP 429

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           + Y    +  + LSE+Q +AILE+RL RLTGL RD I  E   +   I    +IL S + 
Sbjct: 430 AGY----EKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAE 485

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           ++ II  EL  +K+     RRT IV    D+  ED I   +MVVTVSH GY+KR  + +Y
Sbjct: 486 IMKIIVGELTEIKERFGDKRRTEIVHQTADISLEDTIEDAEMVVTVSHTGYIKRSAVDLY 545

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG++G+  R+EDFV  LFI ST   +LFFS +G VY+ KV+ +P GS   +GK
Sbjct: 546 RAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPEGSRTTKGK 605

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N++++ +GE+IT I+P    + +  +LY++ AT++G V++  L +++ I  +G  A+
Sbjct: 606 AVVNLVNVQEGEKITAILPV--KDLNREDLYLLMATRNGVVKKTPLVEYLNIRTTGINAV 663

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D+++SV     + D+ L ++ G+ +RFP S  R   GR + GVRG++L   D+VI
Sbjct: 664 NLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPM-GRVTRGVRGMNLEARDEVI 722

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M +V                                    D +  G+            
Sbjct: 723 GMEVV------------------------------------DPTATGST----------- 735

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I T++E GFGKRT   ++R  +R GKG+     +  N  G +V V  VND +Q++++
Sbjct: 736 ---IFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRN--GLVVGVMQVNDENQLMVI 790

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +D+G ++RVPV    +  R T+GV +  T + E++V+V ++ E
Sbjct: 791 TDQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVAKLAE 833



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 15/216 (6%)

Query: 535 REDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           RED+ ++  +  G VK+ PL  Y   R    G + V + + D +  + +      V   S
Sbjct: 630 REDLYLLMATRNGVVKKTPLVEYLNIRT--TGINAVNLDEGDKLISVALTDGQKDVFLAS 687

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFAT 652
             G     K  R P    +  G+    +  +N   R   I M   +  ++ + ++ +  T
Sbjct: 688 RHG-----KAIRFPESDARPMGRVTRGVRGMNLEARDEVIGMEVVDPTATGSTIFTL--T 740

Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  L ++   +R GK  I +K  +R+  ++ V     EN +++ T  G+ +R P
Sbjct: 741 ENGFGKRTDLDEYRGQSRGGKGLITIKTTTRNGLVVGVMQVNDENQLMVITDQGKILRVP 800

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           ++   V  GRN+ GVR +   + ++++++A +   D
Sbjct: 801 VAGFSVI-GRNTQGVRVMVTEEQEKIVAVAKLAERD 835


>gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 877

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/901 (45%), Positives = 577/901 (64%), Gaps = 70/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+                                             NDS V   I 
Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    
Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846

Query: 907 E 907
           E
Sbjct: 847 E 847


>gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 908

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/918 (45%), Positives = 567/918 (61%), Gaps = 94/918 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP HN+
Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  + 
Sbjct: 188 NEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRSRAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +G RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IEEENG-RERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 307 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+   W    +K +++   
Sbjct: 367 ELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEKAG 426

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  D   YL+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 427 DDAARPEWLEPEFGI-RDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIAA 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  V       RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 486 LLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 546 YAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 605

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  ARG+ ++N+L L +GERIT I+P   + ED+      Y++ AT HG V++  L+
Sbjct: 606 PLASRTARGRPIVNLLPLAEGERITAILPVREYAEDK------YIIMATSHGTVKKTALT 659

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708
            +     +G IA+ L   D+++ V+     NDI+L +  G+ VRF               
Sbjct: 660 AYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKID 719

Query: 709 PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           P +   V A    GR + GVRGI L  G  V+S+ IV   + D                 
Sbjct: 720 PETGEEVIALRAMGRTATGVRGIKLEDGQTVVSL-IVPKGEGD----------------- 761

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              ILTV+E G+GKRT   ++   +R  
Sbjct: 762 -----------------------------------ILTVTENGYGKRTDLAEYPAKSRGT 786

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG+ +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  
Sbjct: 787 KGVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIR 844

Query: 885 TAKDERVVSVERIRESEI 902
           TA+DE+VV ++RI E ++
Sbjct: 845 TAEDEKVVGLQRIDEIQV 862


>gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069]
 gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069]
          Length = 879

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/900 (45%), Positives = 564/900 (62%), Gaps = 82/900 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G ++NK Y K
Sbjct: 6   KEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF  NYDGS  EP VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A+IDNPDI +  LME I+GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAAIINGRAGIIDAYHTGRGKIYLRSR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           SH+E  + SG ++ IVVTE+PYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+V
Sbjct: 246 SHVETDEKSG-KQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRMV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL++G   +V+LN LY  + +Q++F +NMVAL+  +P  F L   + AFV  R EVV R
Sbjct: 305 IELRKGEVPEVVLNNLYAQSQMQNVFGINMVALDNNQPRLFNLKDAIDAFVTHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR++AHVL GLAIA+AN+D ++ +I+ SP P+ A+  LM R W    +  ++
Sbjct: 365 RTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVSTML 424

Query: 432 -----------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                      +L  +  +    DG   LS+ Q +AIL+LRL +LTGL  D I  E   L
Sbjct: 425 ARAGTEACRPEELAAEFGF---HDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E L IL S  RLL +I++EL  V++     RR+ I++  LD+   D I  ED+VV
Sbjct: 482 LGLIEELLRILMSTERLLEVIREELEEVRENFGDERRSEILDSKLDLTIADLITEEDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK   LS Y+AQRRGG+G+S   M+DEDF+  L + STH ++L FSS G VY 
Sbjct: 542 TLSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
            KV+ LP     +RGK ++N+L L  GERI  I+P   F ED+      +V  AT +G V
Sbjct: 602 LKVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFSEDK------FVFMATANGTV 655

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  F +   +G IA+ +   DE++ V      N I++ +  G+ +RF  + +R   
Sbjct: 656 KKTSLEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGM- 714

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG+ L +G +VI M +                                   + 
Sbjct: 715 GRTARGVRGMKLPEGAKVIQMIVA----------------------------------EE 740

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D SV                   LT +E G+GKRT+  D  +  R G+G+ +  +S+ N 
Sbjct: 741 DGSV-------------------LTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERN- 780

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GA+V+  PV D D+++L+S  GTLIR  V++IRI  R T+GV +      E +V ++RI
Sbjct: 781 -GAVVSAVPVIDGDEVMLISKGGTLIRTGVDDIRIMGRNTQGVRLIKLDDGETLVGLQRI 839


>gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345]
 gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345]
          Length = 903

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/920 (45%), Positives = 568/920 (61%), Gaps = 94/920 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  + 
Sbjct: 188 NEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +G RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IEEENG-RERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 307 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+   W    +K +++   
Sbjct: 367 ELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEKAG 426

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  D   YL+E Q +AILELRL RLTGL  D I  E   L   I  
Sbjct: 427 DDAARPEWLEPEFGI-RDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIAA 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +IK+EL  V       RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 486 LLFILGSPERLMEVIKEELEEVLTNFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 546 YAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 605

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P+ S  ARG+ ++N+L L +GERIT I+P   + ED+      Y++ AT HG V++  L+
Sbjct: 606 PLASRTARGRPIVNLLPLAEGERITAILPVREYAEDK------YIIMATSHGTVKKTALT 659

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708
            +     +G IA+ L   D+++ V+     +DI+L +  G+ VRF               
Sbjct: 660 AYSNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKID 719

Query: 709 PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           P +   V A    GR + GVRGI L  G  V+S+ IV   + D                 
Sbjct: 720 PETGEEVIALRAMGRTATGVRGIKLEDGQTVVSL-IVPKGEGD----------------- 761

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              ILTV+E G+GKRT   ++   +R  
Sbjct: 762 -----------------------------------ILTVTENGYGKRTDLAEYPAKSRGT 786

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG+ +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  
Sbjct: 787 KGVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIR 844

Query: 885 TAKDERVVSVERIRESEIVD 904
           TA+DE+VV ++RI E ++ D
Sbjct: 845 TAEDEKVVGLQRIDEIQVPD 864


>gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 897

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/910 (44%), Positives = 571/910 (62%), Gaps = 87/910 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K A
Sbjct: 8   ILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H LL DL K+TVDF PNYDG+   P VL  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 AKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ AY TGRG I +R  + 
Sbjct: 188 TEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEAYRTGRGKIYMRARAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +E I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+V+E+K
Sbjct: 248 IEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T +Q++F +NMVAL+  +P+ F L+ ILKAFV  R EVV RRT +
Sbjct: 308 RNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLDILKAFVLHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P  A+  L  + W   D+ ++++   
Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWQLGDVSEMLERAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           + +         + I  DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I E
Sbjct: 428 NDAARPDWLEPEFGI-RDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++DE    RRT I     D++ ED I RE++VVT+S  G
Sbjct: 487 LLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVVVTLSREG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   L+ Y +QRRGGKG+S   M++EDF+  L + +TH  +L FS+ G +Y  KV++L
Sbjct: 547 YVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++NIL L + ERIT I+P  E E      YV+ AT +G V++  L  + 
Sbjct: 607 PLASRNARGRPIVNILPLEENERITAILPIQEFEEGK---YVLMATANGTVKKTALVQYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711
           +   +G IA+ L+  DE++ V+     +DI+L +  G+ VRF               P +
Sbjct: 664 RPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPET 723

Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              + A    GR + GVRGI L +G +V+S+ IV   D                      
Sbjct: 724 GEEILALRPMGRTATGVRGIRLQEGQRVVSL-IVPQGDG--------------------- 761

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           ILT +E GFGKRT   D+   +R+ +G+
Sbjct: 762 -------------------------------AILTATENGFGKRTPVEDYPAKSRATQGV 790

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  G +V    VN++D+I+L+SD+GTL+R  V E+    R T+GV +  T  
Sbjct: 791 VSIKVSERN--GKVVGAVQVNESDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLIRTGA 848

Query: 888 DERVVSVERI 897
           DE VV ++RI
Sbjct: 849 DEHVVGLQRI 858


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/891 (44%), Positives = 568/891 (63%), Gaps = 90/891 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I  V+I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G   +K Y
Sbjct: 8   KQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLGFTPDKAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA   GEV+GKYHPHG+AA+YD+L RMAQ++SLR   I+G GNFGS+DGDPPAA RYT
Sbjct: 68  RKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDPPAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 128 EARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + VID+P++ LD LM+II+GPDFPT  +I+G+ GI++AYATG+G I++R
Sbjct: 188 PHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIVGKQGIRDAYATGKGKIIVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE+  G++++IVVTE+PYQVNKA ++E+IAELV+EKRI  I+DLRDESD+ G R+V
Sbjct: 248 AVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDESDKDGMRIV 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFRE 366
           IELK+ A+A+V+LNQLY+ T +Q  F+VNMVAL       ++P    L   +  ++  +E
Sbjct: 308 IELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAIDYYIKHQE 367

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRTK+ L+KA  RAH+L GL IA+ NLDEV+ IIR S N   A+  L+QR      
Sbjct: 368 DVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALIQRFG---- 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  SE Q +AI+++RL RLT L R+ I NE   L  EIK 
Sbjct: 424 ----------------------FSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKY 461

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             D+L+++S +L IIK+EL  +K +    RRT+I+    ++E ED I  E+ VVT++H G
Sbjct: 462 YKDVLANKSMVLDIIKKELEEIKQKYGDERRTKIIPDEDEIEIEDLIEVEENVVTLTHFG 521

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y++Q+RGGKG  G+  R+EDFV  LFI STH  +LFF++ G VY+ K + +
Sbjct: 522 YIKRLPTSTYKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEI 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    QA+G A++N+L L+Q E+ITT++P  E +     LY+  ATKHG V++  L +F 
Sbjct: 582 PEAGRQAKGTAIVNLLQLDQNEKITTVIPISEYKEG---LYLFMATKHGIVKKTDLMEFD 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I + G  A+ L   DE++ V       +ILL T+ G  +RF    +R   GR + GV+G
Sbjct: 639 NIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRPL-GRAAQGVKG 697

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D+V+ M                           S D E  +             
Sbjct: 698 ITLEEDDEVVGM---------------------------SADIENAS------------- 717

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V+E+GFGKRT   ++++  R GKGI    V++  + G +  +  
Sbjct: 718 -------------VLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTE--KTGKVAGMKL 762

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+++D ++++S  G++IR+   +I +  RAT+GV +    +   VVSV RI
Sbjct: 763 VSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVSVVSVARI 813


>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
 gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
          Length = 878

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/902 (45%), Positives = 576/902 (63%), Gaps = 72/902 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMALKEILAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+S+ +                          G+   +T+ +N        
Sbjct: 723 GIRLGEGDSVVSLIVP------------------------RGEGAILTATQN-------- 750

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                                G+GKRT+  ++   +R+ KG+ +  V+  N  G +V   
Sbjct: 751 ---------------------GYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDD 845

Query: 906 AE 907
            E
Sbjct: 846 EE 847


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/900 (45%), Positives = 570/900 (63%), Gaps = 70/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 DRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDGC+ +IDN    +D L+EII GPDFPTG +I GR GI  AY TGRG I +R  + 
Sbjct: 188 TEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGIINGRKGIFEAYRTGRGKIYVRAKTE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIELK
Sbjct: 248 VETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q++F +NMVAL   +P+ F L  +L+AF+  R EVV RRT Y
Sbjct: 308 RGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQPKIFNLKEMLEAFIRHRREVVTRRTVY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L GLAIA+AN+D ++ +IR SP P  AR  L+ + W+  ++  +++   
Sbjct: 368 ELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  YL+  Q +AIL+LRL +LTGL  + I +E  SL  +I E
Sbjct: 428 DDAARPEWLTPEYGI-RDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL +VK +    R T I     D+  ED I +ED+VVT+SH G
Sbjct: 487 LLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS+G VY  +V++L
Sbjct: 547 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L +GERIT I+P  E  +   + +++FAT  G V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLGEGERITAILPVEEYSA---DKFILFATAKGTVKKTALNAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   SG  A+ L   DE++ V      N+++L +  G+ VRF    +R   GR + GVRG
Sbjct: 664 RPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAM-GRTATGVRG 722

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+V+S+ +      D D  I  +      +R     T +        + +G IS
Sbjct: 723 INLEGSDRVVSLIV-----PDEDGAILTVTENGFGKR-----TPQQEYPTKSRATKGVIS 772

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                          ++S R+G                +V    
Sbjct: 773 ------------------------------IKVSERNG---------------LVVGAVQ 787

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V +ND+I+L++++GTL+R  V+E+    R T+GV +  TA+ E+VV +ERI E E VDE+
Sbjct: 788 VGENDEIMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVE-VDES 846


>gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
 gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 879

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/894 (45%), Positives = 574/894 (64%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A ID+ +I L+ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  +G  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 428 GDDAARPEWLEPEFGI-REGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                         EG+I
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E
Sbjct: 788 QVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841


>gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
 gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
          Length = 880

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/904 (45%), Positives = 572/904 (63%), Gaps = 81/904 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 SEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAK 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE    + RE I+V EIPYQ+NKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE+
Sbjct: 248 IETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AF+  R EVV RRT 
Sbjct: 308 KRDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFINHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LA+A+ N+D  + +IR +  P  A+  L+ ++W   ++  +++  
Sbjct: 368 FELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAMLEQA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 428 GDDAARPEWLEPEYGI-HDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL +  RL  +I++ELL++KD+ +  RRT + E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILENPERLREVIREELLAIKDQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKGKMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E   N   +  AT  G V++ KLS+F
Sbjct: 607 LPEASRGARGRPIVNLLPLEQEERITAILPVREYEDGLN---IFMATASGTVKKTKLSEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------PISAIRVFA 717
            +   +G IA+KL   DE++ V+     N+++L +  G+ VRF            IRV  
Sbjct: 664 SRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVKG 723

Query: 718 ----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR + GVRGI L+ GD+V+S+ I                          G+ E +T
Sbjct: 724 VRAMGRTAAGVRGIKLSAGDKVVSLIIP------------------------RGEGEILT 759

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             +N                             G+GKRT+  ++   +R+ +G+ +  VS
Sbjct: 760 VTEN-----------------------------GYGKRTAQSEYPTKSRATQGVISIKVS 790

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G ++    V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE+VV 
Sbjct: 791 ERN--GDVIGAIQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEKVVG 848

Query: 894 VERI 897
           ++R+
Sbjct: 849 LQRV 852



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A   ++I E   L  
Sbjct: 524 NSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSA---ARIKEEDFLER 580

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRES 900
           +   N +D I+  S+KG +  + V ++  ASR  +G   V +    ++ER+ ++  +RE 
Sbjct: 581 LLVANTHDTILCFSNKGKMYWMKVYQLPEASRGARGRPIVNLLPLEQEERITAILPVREY 640

Query: 901 E 901
           E
Sbjct: 641 E 641


>gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
 gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
          Length = 900

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/920 (44%), Positives = 572/920 (62%), Gaps = 94/920 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEPQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L + ERIT I+P  E  +   + ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI-------- 710
           F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF      P+        
Sbjct: 662 FSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPV 721

Query: 711 -----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                        +R   GR + GVRG+ LA GDQV+S+ +                   
Sbjct: 722 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIVP------------------ 762

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                           KND  V                   LTV+E G+GKRT   ++  
Sbjct: 763 ----------------KNDGDV-------------------LTVTENGYGKRTVLSEYPT 787

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R  +G+ +  VS+ N  G++V    V D D+ ++++D GTL+R  V E+    R T+G
Sbjct: 788 KGRGTQGVVSIKVSERN--GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQG 845

Query: 880 VVIFSTAKDERVVSVERIRE 899
           V +  TA+DE VV ++RI E
Sbjct: 846 VTLIRTAEDESVVGLQRIDE 865


>gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6]
 gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6]
          Length = 903

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/920 (44%), Positives = 572/920 (62%), Gaps = 94/920 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 AGTDAARPDWLEPQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L + ERIT I+P  E  +   + ++  AT  G V++  L  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEESERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQ 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI-------- 710
           F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF      P+        
Sbjct: 662 FSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPA 721

Query: 711 -----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                        +R   GR + GVRG+ LA GDQV+S+ +                   
Sbjct: 722 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIVP------------------ 762

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                           KND  V                   LTV+E G+GKRT   ++  
Sbjct: 763 ----------------KNDGDV-------------------LTVTENGYGKRTVLSEYPT 787

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R  +G+ +  VS+ N  G++V    V D D+ ++++D GTL+R  V E+    R T+G
Sbjct: 788 KGRGTQGVVSIKVSERN--GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQG 845

Query: 880 VVIFSTAKDERVVSVERIRE 899
           V +  TA+DE VV ++RI E
Sbjct: 846 VTLIRTAEDESVVGLQRIDE 865


>gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23]
 gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23]
          Length = 893

 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/906 (45%), Positives = 567/906 (62%), Gaps = 33/906 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G  Y L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL S   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A             M  +    + D  +  +      ++
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG---------VDMLEEAEETADDDIQTANTAESVHID 769

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +  C         ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 770 PTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAE 907
           I DE E
Sbjct: 879 IPDETE 884


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/906 (45%), Positives = 571/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G     Y LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K DQ +   +V+                       SG T  +T+ +N      +
Sbjct: 722 RGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E R                             +S R G+G+ +  V++ N  G +V  
Sbjct: 759 IDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2]
 gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1]
 gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 921

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/948 (43%), Positives = 571/948 (60%), Gaps = 108/948 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + +E  +  G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G RVV
Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EVV R
Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   +  
Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VVT+
Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY  +
Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN------------------ 644
            + +P  S  ARG+ L+N+L L++GERIT ++    +    N                  
Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664

Query: 645 ----------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                                   Y+  AT  G V++  L  F +   SG IA+KL+  D
Sbjct: 665 VVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM    
Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                     I E   Q L   E     
Sbjct: 781 ------------------------------------------IPESGAQILTASE----- 793

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
              +GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+GTL
Sbjct: 794 ---RGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +R  V+E+ ++ R T+GV +   A DE +V +ER++E    D+ +  E
Sbjct: 849 VRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896


>gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum]
          Length = 907

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/922 (44%), Positives = 571/922 (61%), Gaps = 94/922 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  + 
Sbjct: 188 TEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     +E I+V EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE K
Sbjct: 248 IEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN LY  T LQ+ F +NMVAL+   P+ F L  +LK FV  R EVV RRT +
Sbjct: 308 RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGLPKLFNLKEMLKCFVDHRREVVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++   
Sbjct: 368 ELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLERAG 427

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    +  Y I  DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI E
Sbjct: 428 TDAARPEWLEPEYGI-RDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+ VT+SH G
Sbjct: 487 LMHILASTERLMEVIREELETVRDAFGDARRTEITAATHDIDMEELIAREDVAVTLSHAG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   LS Y AQRRGGKG+S   M++ED++  L + +TH  +L FS+ G  Y+ KV++L
Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRGKTYRLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARGK ++NIL L +GERIT I+P  E     ++ ++  AT  G V++  LS F 
Sbjct: 607 PLASRTARGKPIVNILPLEEGERITAILPVTE---FSDDKFIFMATGDGTVKKTSLSSFA 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI---------- 710
            +  +G IA+ L   D ++ V+     ++I+L +K G+ VRF      P+          
Sbjct: 664 NVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVLDENGQPVLD 723

Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRG+ LA+GDQV+S+ IV   D D              
Sbjct: 724 EHGQPEIKFKGVRAM-GRTASGVRGMKLAEGDQVVSL-IVPSNDGD-------------- 767

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 ILTV++ G+GKRT+  ++    
Sbjct: 768 --------------------------------------ILTVTQNGYGKRTTLGEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ +G+ +  VS+ N  G +       + D+ ++++D GTL+R  V E+    R T+GV 
Sbjct: 790 RATQGVVSIKVSERN--GQVAGAVQTEEGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRESEIV 903
           +  TA+DE VV ++RI E E V
Sbjct: 848 LIRTAEDENVVGLQRIEEIEDV 869


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/898 (44%), Positives = 563/898 (62%), Gaps = 70/898 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H LL D+ K+TVDF PNYDGS +EP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+ ++++P+ DL+AL+EI++ PDFPT  +I G  G+   Y TGRG +V+R  
Sbjct: 186 NLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGLIYGLHGVHEGYRTGRGRVVMRAR 245

Query: 254 SHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           +HIE    + DRE I+V E+PYQVNK  +LE+IAELV EK++  I+++RDESD+ G RVV
Sbjct: 246 THIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR    +V+LN LY++T LQ  F +NMVAL   KP    L  +L  F+  R EVV R
Sbjct: 306 IELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGKPRLLNLKQMLVCFLEHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KARDR H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W +  +++++
Sbjct: 366 RTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLVEEML 425

Query: 432 DLIDDSSY-------TIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 SY         G     Y LS+ Q +AILELRL RLTGL +D I  E   +   
Sbjct: 426 SRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL+   R+  II +EL +++++   PRR+ IV    ++  ED I  EDMVVT+S
Sbjct: 486 ITDLLDILARPERITAIIVEELTAIRNQFGDPRRSEIVLSTAEINIEDLITPEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY KR PL+ YRAQRRGG+G+    M+DEDF+  LF+ +TH +VL FSS G  Y  KV
Sbjct: 546 HTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSSRGRAYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF-ATKHGNVRRNKL 662
           + +P G+  +RGK ++N+  L +GE+IT ++P      +++  + VF AT  G V++  L
Sbjct: 606 YEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPV----QTFDEEHFVFMATSEGTVKKTAL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + F    ++G IA+ LD  D ++ V     E D++L +  G+ VRF  S +R   GR + 
Sbjct: 662 TAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESDVRPM-GREAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG++L  G +VI+M +                          G+T             
Sbjct: 721 GVRGMTLEDGQRVIAMLVA------------------------KGET------------- 743

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          Q +LT +E G+GKRT   ++    R  KG+ A   S  N  G LV
Sbjct: 744 ---------------QSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GKLV 786

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               V+  D+++L+S    LIR  V +IR   RAT+GV + +  +   +  +E++ ES
Sbjct: 787 GAVLVDPTDEVMLISTGAVLIRTKVQDIRELGRATQGVTLINLDEGTYLAGIEKVAES 844


>gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1]
          Length = 881

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/893 (44%), Positives = 559/893 (62%), Gaps = 68/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WNK Y K
Sbjct: 6   KEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+Y+ + RMAQ +S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYD S   P VL AR P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A+ID P+I++D LME I GPDFPTGA I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGAFINGRAGIVEAYKTGRGRIYMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H+E    G+R+ IV TEIPYQ+NKA ++EKIAELV+EK++  I++LRDESD+ G R+VI
Sbjct: 246 HHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG + DV++N ++  T LQS+F +NMVAL   +PE   L  IL+ FV  R EVV RR
Sbjct: 306 ELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPELLNLKQILECFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+D V+ +IR SP+   AR +L+  SW   D+  +++
Sbjct: 366 TIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMAMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD     G ++G   LS  Q +AIL+LRL RLTGL  + + +E   L   I
Sbjct: 426 RAGADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLIAVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+IL + +RL+ +I +EL +V+D+    R T I+    D+   D I    MVVT+S 
Sbjct: 486 AELLEILGNPTRLMEVICEELEAVRDQFGDERLTEILTSRQDLTIADLIDEAPMVVTISD 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL  Y+AQRRGG+G+S   M+DED ++ L + S+H +V+ FS+ G VY  +V+
Sbjct: 546 TGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVYWLRVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ S  A+G+ ++N+L L +GE I+ ++P  ++     + Y+  AT +G V++  +  
Sbjct: 606 EIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDE---MEDSYIFMATANGTVKKTAVEY 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ LD  DE++ V   + ENDI+L +  G+ +RF  S +R   GR + GV
Sbjct: 663 FARPRSTGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESDVRAM-GRTAAGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA   +V+S+                                              
Sbjct: 722 RGIRLADEYKVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + +E C         +L   E GFGKRT + DF +  R G+G+    VS+ N  G +V  
Sbjct: 737 VPQEGCS--------VLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERN--GPVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D D+I+L+SD+GTL+R   +E+    R T+GV +     DE +V VER+
Sbjct: 787 TQVEDTDEIMLISDQGTLVRTRASEVSCQGRNTQGVTLIRLMNDEHLVGVERV 839


>gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 887

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/897 (45%), Positives = 564/897 (62%), Gaps = 71/897 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W ++ +  ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVVAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ L+N+L L+ GE ITT++P    E      Y+  AT +G V++  L
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDDGEYITTMLPV---EEYTEGHYIFMATANGTVKKTPL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR + 
Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L +G ++ISM                                            
Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV
Sbjct: 738 --IPEEGSQ--------ILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERN--GRLV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               V D ++I+L+SD+GTL+R  V+E+    R T+GV +   AKDE +V +ER++E
Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQE 842


>gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
          Length = 893

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/907 (45%), Positives = 571/907 (62%), Gaps = 35/907 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTHMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G  Y L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL S   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A          M   + +    + D +  T+   DS   
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG------VDMLEEAEE----TADDDIQTANTADSVHI 768

Query: 783 GNISEE-RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           G   ++  C         ILT +E G+GK T    +    R  +G+     ++ N  G L
Sbjct: 769 GPTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRL 817

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900
           VA   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S 
Sbjct: 818 VAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASL 877

Query: 901 EIVDEAE 907
            I DE E
Sbjct: 878 SIPDETE 884


>gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
 gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
          Length = 884

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/897 (45%), Positives = 561/897 (62%), Gaps = 71/897 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S +  ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPETLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ L+N+L L+  E ITT++P    E      ++  AT  G V++  L
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDSDEYITTMLPV---EEYTEGHFIFMATAKGTVKKTPL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR + 
Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L +G ++ISM                                            
Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A   +  N  G LV
Sbjct: 738 --IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GRLV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               V D ++I+L+SD+GTL+R  V E+    R T+GV +   AKDE++V +ER++E
Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQE 842


>gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
 gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
          Length = 852

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/894 (46%), Positives = 564/894 (63%), Gaps = 70/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+AA+YD + RMAQ +++R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF  NYDGS QEP VL  R PN LVNGG GIAVGMATN+P H
Sbjct: 126 RMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+A+ID+  + +D LM  + GPD PT A+I G  GI+ AY TGRG +VIR  
Sbjct: 186 NLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAIINGVAGIREAYRTGRGRMVIRAR 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              E+ +   +  ++VTE+PYQVNKA +LEKIA LV+EKRI  I +LRDESD+ G RVVI
Sbjct: 246 CEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY++T L+S+  +NMVAL   +P+  +L  +L AF+  R EVV RR
Sbjct: 306 ELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQPKLHSLRDVLDAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLI 431
           T Y L KAR+R HVL GLA+A+AN+DEV+ +I+ SP P  A+  L+ RSW   S I +++
Sbjct: 366 TVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGITEML 425

Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                     +    ++G  G  Y LSE Q +AIL+LRL RLTGL ++ I  E   L   
Sbjct: 426 QRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRDLLGS 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++ELL++K+    PRRT I    +D+  ED I  ED+VVT+S
Sbjct: 486 INELLAILGSGDRLMAVIREELLAIKEHYADPRRTEITANRVDLTLEDLIQPEDVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQ RGGKG++   M+DEDF+  LF+ +TH ++L FSS G  Y  KV
Sbjct: 546 HGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLCFSSHGKCYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP GS  +RGK ++N+L L+  ERI+ ++   E +   +  +V  AT+ G V++  LS
Sbjct: 606 YELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFD---DQHFVFMATRKGTVKKTPLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   SG IA+ L   D +++V     E +I+L T  G+ +RFP  A+R   GR + G
Sbjct: 663 DFSRPRSSGIIAVNLQEDDWLVNVGITDGEREIMLLTDAGKAIRFPEDAVRPM-GRTAGG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L  G  VI +                         LI G              EG
Sbjct: 722 VRGIQLGTGQSVIQL-------------------------LILG--------------EG 742

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +I               LT +E G+GKRT   ++   +R G+G+ +   S+ N  G +V 
Sbjct: 743 DI---------------LTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERN--GNVVG 785

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V + D+I+L+++ GTL+R+PV EI I SR T+GV + +   +ER+  V RI
Sbjct: 786 AAQVTEEDEIMLITNAGTLVRIPVAEISIVSRNTQGVKLIALGGEERLAGVARI 839


>gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 862

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/891 (45%), Positives = 562/891 (63%), Gaps = 71/891 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   ILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +++R +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH LL D+ K+TVD+  NYDGS  EP VL  R PN+LVNGG GIAVGMATNIP HN+
Sbjct: 128 SRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D CVA+ID+  +D+DALM+ + GPD PT  +I G  GI  AY TGRG +V+R  + 
Sbjct: 188 REVIDACVALIDDDSLDVDALMQYLPGPDLPTAGIINGTAGIHEAYRTGRGRMVMRARAR 247

Query: 256 IEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE+   SG + +I+V+E+PYQVNKA +LEKIAELV+EKR+  I +LRDESD+ G RVVIE
Sbjct: 248 IEEDDKSG-KARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG   +V+LN LY++T LQ++F +NMVAL   +P+   L  IL AFV  R EVV RRT
Sbjct: 307 LRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQPKLLNLRQILDAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL GLA+A+AN+D V+ +I+ SP P  A+  LM R W    + D+++ 
Sbjct: 367 IFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDMLER 426

Query: 434 IDDSS-------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D ++         +G DG   LS  Q +AILELRL RLTGL ++ I  E   L  +I E
Sbjct: 427 ADATTPDDLSPDVGLGEDG-YRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIGE 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL S  RL+ +I++EL++++++    RR+ I+   LD+  ED I  +D+VVT+SH G
Sbjct: 486 LIHILESGERLMEVIREELVAIREQYGDERRSEIIPQALDLTLEDLITPQDVVVTLSHSG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL  YRAQRRGG+G+S   M+D DFV  LF+ +TH ++L FSS G  Y  KV+ L
Sbjct: 546 YAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGKCYWLKVYEL 605

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS Q+RGK ++N+L L   ERI  ++P  E + +    +V  AT +G V++  LS F 
Sbjct: 606 PQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFDDAH---FVFMATHNGTVKKTPLSHFS 662

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L + D ++ V       D++L +  G+ +RF  S +R   GR + GVRG
Sbjct: 663 RPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAM-GRTAAGVRG 721

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L  G +VI++ I                       L  GD                  
Sbjct: 722 IRLEPGQRVIALLI-----------------------LDDGD------------------ 740

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL+ +  G+GKRT   ++    R G G+     S  N  G +V    
Sbjct: 741 -------------ILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSDRN--GEVVGAVQ 785

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V D D+I+L++  GTL+R PV +I   SR T+GV + S  +DE +V +ERI
Sbjct: 786 VADEDEIMLITRHGTLVRTPVADISRLSRNTQGVKLISLDEDETLVGLERI 836


>gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c]
 gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c]
          Length = 893

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/906 (44%), Positives = 568/906 (62%), Gaps = 33/906 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G  Y L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A             M  +    + D  +  +  +   ++
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG---------VDMLEEAEETADDDIQTANTADSVHID 769

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +  C         ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 770 PTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAE 907
           I DE E
Sbjct: 879 IPDETE 884


>gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12]
 gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12]
          Length = 893

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/906 (44%), Positives = 568/906 (62%), Gaps = 33/906 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G  Y L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A             M  +    + D  +  +  +   ++
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG---------VDMLEEAEETADDDIQTANTADSVHID 769

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +  C         ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 770 PTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAE 907
           I DE E
Sbjct: 879 IPDETE 884


>gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297]
 gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297]
          Length = 881

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/903 (45%), Positives = 565/903 (62%), Gaps = 72/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG +A+I+NPD+D+D LME I GPDFPTGA I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGAYINGRKGIVEAYRTGRGRIYMRAK 245

Query: 254 SHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           + +   EKT   RE I+V EIPYQVNKA ++EKIAELV+EK+I  I++LRDESD++G R+
Sbjct: 246 ADVVVDEKTG--RESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRG S DV+LN LY  T L+++F +N VAL   +P+   L  +L+AF+  R EVV 
Sbjct: 304 AIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVDGQPKVLNLKEMLEAFIRHRREVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR R H+L GLA+A+AN+DE++ +IR S     A+  ++ RSW   D+  +
Sbjct: 364 RRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSAM 423

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         +D     G  D   YLS  Q + IL++RL +LTGL  D +  E   +  
Sbjct: 424 LERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQIID 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L IL+S  RL+ +I++EL+ VKDE    R+T I+   LD+  ED I  EDMVVT+
Sbjct: 484 DIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEIMTSRLDLSMEDLITEEDMVVTI 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y AQ+RGGKGRS   ++D+DF+  L + S+H ++L FS+ G VY  +
Sbjct: 544 SHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFGKVYWLR 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P  S  ARG+ ++N+L L   ER+T I+P    +  +   ++  AT  G V++  L
Sbjct: 604 VFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFDPDY---FIFMATASGTVKKTSL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +   SG IA+ LD  D ++ V     E +++L +  G+ VRF    +R   GR + 
Sbjct: 661 DAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRPM-GRTAR 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI                                              SL++  SV 
Sbjct: 720 GVRGI----------------------------------------------SLEDGQSV- 732

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             IS    QE    E F+LT SE+G+GKRT   +F    R  KG+ A   +  N  G LV
Sbjct: 733 --ISLIVPQE----EGFVLTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRN--GKLV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V + D+++L+SD+GTL+R  V+EI    R T+GV +   A DE++VS+ERI E E 
Sbjct: 785 GAKQVFNGDEVMLISDQGTLVRTRVDEISSLGRNTQGVKLIRVADDEKLVSIERIEEPED 844

Query: 903 VDE 905
           V E
Sbjct: 845 VVE 847


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/894 (46%), Positives = 566/894 (63%), Gaps = 69/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + IE  + SG R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVV
Sbjct: 246 TEIETDENSG-RQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV R
Sbjct: 305 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K ++
Sbjct: 365 RTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAML 424

Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         DD +   G     Y LSE Q +AILELRL RLT L +D I NE   L   
Sbjct: 425 EKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNL 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IKE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+S
Sbjct: 485 IKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K 
Sbjct: 545 HQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKA 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+
Sbjct: 605 YQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLN 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + G
Sbjct: 662 AFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI + K DQ +   +V+                       SG T  +T+ +N      
Sbjct: 721 VRGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRT 757

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +I E R                             +S R G+G+ +  V++ N  G +V 
Sbjct: 758 HIDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVR 786

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I
Sbjct: 787 SLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKI 840


>gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666]
 gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666]
          Length = 880

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/905 (44%), Positives = 569/905 (62%), Gaps = 77/905 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL DL K+TVDF PNYDGS QEP+V+  R PN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++ NP+  +D LMEI+  PDFPTG +I G  G+K+ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHMLKNPEASIDELMEIVPAPDFPTGGIIYGINGVKDGYRTGRGKVVMRAKCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F++ R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIQVFLSHRREVVTRRTVFTL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
            KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R W++S +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSLVREMLTRTRAD 430

Query: 435 ------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 DD        ++ +GSDG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
            EI + LDIL+   R+  II +EL ++K E        RR++I     D+  ED I   D
Sbjct: 491 AEIDDLLDILAKPERVSIIIGEELSAIKLEFGQTKLGARRSQIEHSSFDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++P   ++ S+  + YV  AT  G 
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRSFPADQYVFMATSMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSDGGKAVRFDENDVRPM 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVRG++L  G  VI+M                         L++ D        
Sbjct: 731 -GRNARGVRGMTLEDGQGVIAM-------------------------LVAED-------- 756

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              ++Q +LT ++ G+GKRTS  ++    R  KG+ A   S+ N
Sbjct: 757 -------------------EQQSVLTATQNGYGKRTSITEYTRHGRGTKGMIAIQQSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV +    +  ++  ++R
Sbjct: 798 --GKVVAATLVHVDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIGLDEGSQLSGLQR 855

Query: 897 IRESE 901
           I E++
Sbjct: 856 IVEND 860


>gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
 gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
          Length = 861

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/906 (44%), Positives = 581/906 (64%), Gaps = 73/906 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E     V+I  EM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G ++NK Y 
Sbjct: 12  ESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMDVLGNDYNKSYK 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD  AA RYTE
Sbjct: 72  KSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +H LL DL KDTVDF  NYDGS  EP VL AR PN+L NG  GIAVGMATNIP 
Sbjct: 132 IRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSSGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+  I+N DI +D L+EI+ GPDFPT  +I G +GI+ AY TG+G I +R 
Sbjct: 192 HNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGIINGTSGIRQAYETGKGKIYLRC 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           VSHIE    ++  I+VTE+PYQVNKA ++ KIAELV++KRI  I  LRDESD+ G  +VI
Sbjct: 252 VSHIE--GEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLRDESDKDGMSMVI 309

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +VILN LY+ T +Q++F +NMVA++   P+  TL  IL+AF+A R +VV RR
Sbjct: 310 ELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKGIPKLMTLKDILEAFIAHRRDVVTRR 369

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKAR+R H+L GL++A+ N+D +V +I+ +P+   AR  L+ ++W +S I +L+ 
Sbjct: 370 SIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAKTWRSSVIIELVG 429

Query: 433 LIDDSSYT---------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             D + +          +   G   LS+ Q +AIL+L+L RLTG  +D I +E N L   
Sbjct: 430 NRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKDKIFDEFNELLER 489

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  LDIL +  RL+ +I +EL+ ++      R T+I+E  +D+  ED I +E+ VVT+S
Sbjct: 490 IKYLLDILQTPERLMQVICEELIDIQSNYGNARMTQILEHNIDLTLEDLIAQEERVVTLS 549

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y+AQ RGGKG+S   ++DEDFV  LFI ++H  VL FSS G VY  KV
Sbjct: 550 HGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIANSHDIVLCFSSFGKVYWLKV 609

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662
           + LP+ S  +RGK +IN+L L + E I  I+P  + DE    N +V  AT  G  ++  L
Sbjct: 610 YDLPMASRISRGKPIINLLPLEKKEIINAILPILKFDE----NHFVFMATSSGTCKKTAL 665

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           ++F +  + G IA++L + D+++ VE  + E+DI+L +  G+ +RF  S +R+  GR ++
Sbjct: 666 TNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKSIRFKESDVRI-VGRTAI 724

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L  GD+V+S+ IV + D+                                    
Sbjct: 725 GVRGIKLVDGDKVVSL-IVTNQDSP----------------------------------- 748

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +LT +EKGFGKRT   ++R+ +R G G+ +   S  N  G ++
Sbjct: 749 -----------------VLTATEKGFGKRTHLNEYRVQSRGGSGVISIKTSDRN--GKII 789

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V + D+++L+S+KG L+R    ++ I  R T+GV++ + +KDE++VS+ ++ E+E 
Sbjct: 790 GAIQVTNEDEMMLISNKGILVRARAADVSIIGRNTQGVILINISKDEKLVSIAKVVETE- 848

Query: 903 VDEAES 908
            D++ES
Sbjct: 849 DDKSES 854


>gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619]
 gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619]
          Length = 923

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/936 (43%), Positives = 562/936 (60%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIVVTE+PYQ+NKA ++EKIAELV++K+I  I +LRDESD+ G R+V
Sbjct: 246 SEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALIDGRPRVLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  AR  L+  +W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  DG  YLS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY +K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE------------- 640
           + +P  S  ARG+ L+N+L L +GERIT ++            P++E             
Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELEDGDEGVIEGEV 665

Query: 641 -------------SSW----NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                          W       Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GR + GVRG+ L KG Q+ISM     
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQQIISML---- 780

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I E   Q        ILT 
Sbjct: 781 -----------------------------------------IPESGAQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+   SR T+GV +   A DE +V +ERI+E
Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/906 (45%), Positives = 571/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 14  KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKPYKK 73

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 74  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 134 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 194 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 253

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 254 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 313

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 314 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 373

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 374 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 433

Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G   + Y LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 434 KAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 493

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 494 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 553

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 554 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 613

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 614 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 670

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 671 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 729

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K DQ +   +V+                       SG T  +T+ +N      +
Sbjct: 730 RGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRTH 766

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E R                             +S R G+G+ +  V++ N  G +V  
Sbjct: 767 IDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVRS 795

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 796 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 855

Query: 904 DEAEST 909
           +EAE +
Sbjct: 856 EEAEDS 861


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/894 (45%), Positives = 567/894 (63%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKILGLKEILSAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  ++   
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAMLASA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L ++I 
Sbjct: 428 GDDAARPEWLEPQFGI-HDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILS+  RL+ +I++EL +++D+ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+S+ I+   D       C    ++  +      TE         + +G I
Sbjct: 723 GIRLGEGDSVVSL-IIPRGDG------CI---LTVTQNGFGKRTESTEYPTKSRATQGVI 772

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S                               ++S R+G                ++   
Sbjct: 773 S------------------------------IKVSERNG---------------PVIGAI 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V++ DQI++++D GTL+R  V+E+    R T+GV +  TA DE VV ++R+ E
Sbjct: 788 QVDEADQIMMITDAGTLVRTRVSEVSTVGRNTQGVTLIRTADDENVVGLQRVAE 841


>gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
 gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
          Length = 879

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/903 (44%), Positives = 563/903 (62%), Gaps = 76/903 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYDGS  EP+V  AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C+A++ NP++D++ L+E +  PDFPT   I G  G+K  Y TGRG ++
Sbjct: 182 IPPHNMTEVIDACLALLKNPEMDIEELIEYVPAPDFPTAGFIYGLAGVKEGYRTGRGRVI 241

Query: 250 IRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E    G+R+ I++ E+PYQVNKA +L KI E+VREKR+  I+++RDESD+ G 
Sbjct: 242 MRARCHFEDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R VIELKRG +ADV+LN+LY+ T +Q  F +NMVA+   +P    L  ++ AF+  R EV
Sbjct: 302 RAVIELKRGENADVLLNKLYKDTQMQDSFGINMVAIVDGQPRLLNLKQVMDAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P  A+RELM +SW +  ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVE 421

Query: 429 DLIDLIDDSSYTIG---------SDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNEL 477
           D++  + D+S   G         +D   +  LS+ Q +AILELRL RLTG+ +D I  E 
Sbjct: 422 DMLSRVSDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEY 481

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I + LDIL+   R+  II  EL++VK +    RR+ IV    DM  ED I  ED
Sbjct: 482 REVMDKIADLLDILAKPERVTAIIGDELVAVKTQFGDKRRSEIVTHTHDMSMEDLIPPED 541

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K   +  Y+AQ+RGG+GR     +D+DF+ +LF+ +TH  +L FS+ G 
Sbjct: 542 VVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKGR 601

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKH 654
           VY  KV+ +P GS  ARGK ++N+L L +GE+I  I+P   F ED+      YV FAT +
Sbjct: 602 VYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFAEDK------YVFFATAN 655

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L+DF +  + G IA+ LD  D ++ V      +D++L +  G+ VRF  + +R
Sbjct: 656 GTVKKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVR 715

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR S GVRG+ L +  QVISM                                    
Sbjct: 716 E-TGRASRGVRGMKLHENQQVISML----------------------------------- 739

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                     ++E   Q +       LT +E G+GKRT   ++    R  +G+ A   S+
Sbjct: 740 ----------VAENEQQSV-------LTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSE 782

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +VA   VN  D+I+++   G LIR  V EIR   R T+GV + +  K ER+  +
Sbjct: 783 RN--GKVVAATLVNPEDEIMMIGTNGVLIRTRVREIREMGRTTQGVTLMNLEKGERLAGL 840

Query: 895 ERI 897
            RI
Sbjct: 841 SRI 843


>gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
 gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
          Length = 867

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/897 (44%), Positives = 557/897 (62%), Gaps = 78/897 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L D+ K+TVDF  NYDGS  EP V   R P +LVNGG GIAVGMATNIP H
Sbjct: 126 RMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+DGCVA+ID P++D+  LME I GPDFPT  +I G  GI+ AY TGRG I +R  
Sbjct: 186 NINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGARGIREAYRTGRGRIYMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+    +  IVVTEIPYQVNKA +LEKIAELV+EK+I  I  LRDESD+ G R+VIE
Sbjct: 246 ASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG   +VILN LY  T LQ++F +NMVAL+  +P    L  +L+AF+A R EVV RRT
Sbjct: 306 LRRGEVGEVILNNLYAQTQLQTVFGINMVALDKGQPRLMNLKQVLEAFIAHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            Y L KAR+R H+L GLA+A++N+D ++ +I+ S NP  AR++L+   W    +  ++  
Sbjct: 366 LYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGMLER 425

Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                   D ++D    +  D   +LS  Q +AIL+L+L RLTGL +D I  E   L  +
Sbjct: 426 AGADATRPDTLEDGLGLL--DDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEK 483

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L+IL +  RL  +++ EL+ ++D     RRT I +   D+  ED I  +D+VVT+S
Sbjct: 484 IAELLNILRNPDRLTEVVRDELVELRDSYGDERRTEIYQNQSDLTVEDLINEQDVVVTLS 543

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQ+RGG+GRS   M+DEDF+  LF+  TH ++L FSS G VY +KV
Sbjct: 544 HAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYWKKV 603

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660
           + LPIGS  ARGK ++N+L L +GERI+ ++P   F +DE      +V  AT +G V+R 
Sbjct: 604 YELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFTDDE------FVFMATANGTVKRT 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS+F +   +G IA+ +   D ++ V     + DI+L    G+ +RF    +R   GR 
Sbjct: 658 ALSNFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPM-GRT 716

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI L+  D+   + +++  D D                                 
Sbjct: 717 AAGVRGIRLS--DEQTMVGLIIVEDGD--------------------------------- 741

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILT +  G+GKRT+  D+    R G G+ +   S  N  G 
Sbjct: 742 -------------------ILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRN--GG 780

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +V    V   D+I+L+S+ G L+R  V +I + SR T+GV +      E++V +ERI
Sbjct: 781 VVGAVQVATEDEIMLISNGGVLVRTAVEDISVMSRNTQGVRLIRLDDKEQLVELERI 837


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/898 (44%), Positives = 579/898 (64%), Gaps = 70/898 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+A+++N ++ +D L+++I GPDFPTG +I GR+GI +AY TGRG I +R  
Sbjct: 186 NLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGGIINGRSGILDAYRTGRGKIYVRAR 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE    + +E I+VTE+PY VNKA ++EKIAELV++K+I  I  LRDESD+ G RVVI
Sbjct: 246 TEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY +T +Q++F +NMVAL   +P+   L  IL AF+  R EVV RR
Sbjct: 306 ELRRGELTEVMLNNLYTHTQMQNVFGINMVALVNGQPKTLNLKEILAAFIDHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D V+ +I+ S +P  A++ L+ R W    + ++++
Sbjct: 366 TVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                       +  + I  D   +L+E Q +AIL+LRL +LTGL  + I +E   L  E
Sbjct: 426 RAGGDAARPEWLEPEFGI-RDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGE 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I++EL  VK +    RRT I    +++  ED I  ED+VVT+S
Sbjct: 485 IAELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PLS Y AQRRGG+G++   ++DEDFV  L + +TH ++L FS+ G VY  KV
Sbjct: 545 HEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L++ ERIT I+P    +S  ++ YV FAT  G V++ +LS
Sbjct: 605 YQLPEASRTARGRPIINLLPLDENERITAILPV---KSYDDDKYVFFATGDGTVKKTELS 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            + +   SG  A+ L+  D ++ V      ++I+L +  G+ VRF  S +R   GR + G
Sbjct: 662 AYSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSM-GRTATG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L + D+V+S+ +  +  A                                     
Sbjct: 721 VRGMKLGETDKVVSLIVPQNGGA------------------------------------- 743

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ILT +E G+GKRT   ++ + +R+  G+ +  V++ N  G +V 
Sbjct: 744 ----------------ILTATENGYGKRTDLAEYPVKSRATLGVISIQVTERN--GKVVG 785

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              V+++D+I+L+++ GTL+R  V+E+ +  R T GV +  TA+DE++VS+ER+ E E
Sbjct: 786 AIQVDESDEIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVAEPE 843



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VK+  LS Y   R    G   + + + D +  + I   ++ ++ FS  G     KV R
Sbjct: 653 GTVKKTELSAY--SRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAG-----KVVR 705

Query: 606 LPIGSPQARGKALINILSLNQGER---ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                 ++ G+    +  +  GE    ++ I+P        N   ++ AT++G  +R  L
Sbjct: 706 FNESDVRSMGRTATGVRGMKLGETDKVVSLIVP-------QNGGAILTATENGYGKRTDL 758

Query: 663 SDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++   +R+  G I++++  R+ +++      + ++I+L T  G  VR  +S + +  GR
Sbjct: 759 AEYPVKSRATLGVISIQVTERNGKVVGAIQVDESDEIMLITNAGTLVRTRVSEVGLI-GR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD 747
           N+ GVR I  A+ ++++S+  V   + D
Sbjct: 818 NTAGVRLIRTAEDEKLVSLERVAEPEGD 845


>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
 gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
          Length = 836

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/894 (45%), Positives = 564/894 (63%), Gaps = 83/894 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR+
Sbjct: 9   SVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSARV 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R+++
Sbjct: 69  VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMEQ 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 129 LAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLTE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG VAVIDNP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    IE
Sbjct: 189 VIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQIE 248

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +   +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G R+VIELK+
Sbjct: 249 TQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIELKK 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT + 
Sbjct: 309 DENPTILLNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIFD 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R                
Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LS++Q +AIL++RL RLTGL RD I  EL  +   I    +IL+S + 
Sbjct: 413 ----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAE 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++Y
Sbjct: 463 ILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARGK
Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGK 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L+L   E+ITTI+P  E     ++ +++ AT++G V++  + ++      G IA+
Sbjct: 583 AIVNLLNLAANEKITTILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAV 639

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D++++V     + D+LL +  G+ +RF    +R   GR S GVRG++L   D VI
Sbjct: 640 NLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRT-VGRVSRGVRGMTLEDEDVVI 698

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M I+                            E  T    DS+                
Sbjct: 699 GMEIL---------------------------NENFT----DST---------------- 711

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L+
Sbjct: 712 ---IFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLMLI 766

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +D+G ++RVPV    I  R T+GV +    ++ERVV+V R+ E E  DE E  E
Sbjct: 767 TDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGE 820


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/906 (45%), Positives = 571/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GL IA+AN+DE++ +I+ S  P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G     Y LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K DQ +   +V+                       SG T  +T+ +N      +
Sbjct: 722 RGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E R                             +S R G+G+ +  V++ N  G +V  
Sbjct: 759 IDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
 gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
          Length = 836

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/894 (45%), Positives = 565/894 (63%), Gaps = 83/894 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR+
Sbjct: 9   SVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSARV 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R+++
Sbjct: 69  VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMEQ 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL D+ K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 129 LAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLSE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG VA+IDNP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    IE
Sbjct: 189 VIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQIE 248

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +   +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G RVVIELK+
Sbjct: 249 TQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELKK 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +  +ILN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT + 
Sbjct: 309 DENPTIILNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIFD 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R                
Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LS++Q +AIL++RL RLTGL R+ I  EL  +   I    +IL+S + 
Sbjct: 413 ----------FGLSDLQAQAILDMRLHRLTGLEREKIMEELREILKYIARLKEILASEAE 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++Y
Sbjct: 463 ILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARGK
Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGK 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L+L   E+ITTI+P  E     ++ +++ AT++G V++  + ++      G IA+
Sbjct: 583 AIVNLLNLAANEKITTILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAV 639

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D++++V     + D+LL +  G+ +RF    +R   GR S GVRG++L   D VI
Sbjct: 640 NLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRT-VGRVSRGVRGMTLEGEDVVI 698

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M I+                            E  T    DS+                
Sbjct: 699 GMEIL---------------------------NENFT----DST---------------- 711

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L+
Sbjct: 712 ---IFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLMLI 766

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +D+G ++RVPV    I  R T+GV +    ++ERVV+V R+ E E  DE+E  E
Sbjct: 767 TDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGE 820


>gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 915

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/935 (43%), Positives = 581/935 (62%), Gaps = 110/935 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+V+GC+A+I+N D+ +D LM  I GPDFPTG +I GR+GI  AY TGRGS+ +R  + 
Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAE 247

Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +   EKTS  RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VI
Sbjct: 248 VEVDEKTS--RETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T +Q+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EIKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D V+ +IR S  P  A+  L+ R W   ++  +++
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLE 425

Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              D +         + I  +G  YL+E Q +AIL+LRL +LTGL  + I  E  SL   
Sbjct: 426 KAGDDAARPEWLEPEFGI-REGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDL 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+S
Sbjct: 485 IAELLFILASPVRLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PLS Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV
Sbjct: 545 HQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L++GERIT I+P  E ++   + YV FAT +G V++  LS
Sbjct: 605 YQLPEASRGARGRPIINLLPLDEGERITAILPVKEYDA---DKYVFFATANGTVKKTSLS 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------ 717
           DF +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   + R  A      
Sbjct: 662 DFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADATDEV 721

Query: 718 -------------------------------GRNSVGVRGISLAKGDQVISMAIVLHADA 746
                                          GR + GVRGI L  GD+V+S+ +      
Sbjct: 722 DTDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVP----- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                               GD   +T+ +N                             
Sbjct: 777 -------------------RGDGAILTATEN----------------------------- 788

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  ++   +R  +G+ +  V + N  G ++    V D DQI+L+++ GTL+R  
Sbjct: 789 GYGKRTALDEYPTKSRGTQGVISIKVDERN--GKVIDAIQVEDTDQIMLITNGGTLVRTR 846

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+E+ +  R T GV +  T +DE VV ++R+ ES+
Sbjct: 847 VSEVSVIGRNTGGVRLIRTGEDETVVGLQRVAESD 881



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 10/143 (6%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           P  R  A +  + L  G+++ +++  P  + +     ++ AT++G  +R  L ++   +R
Sbjct: 751 PMGRTAAGVRGIKLGAGDKVVSLI-VPRGDGA-----ILTATENGYGKRTALDEYPTKSR 804

Query: 671 S--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              G I++K+D R+ +++        + I+L T  G  VR  +S + V  GRN+ GVR I
Sbjct: 805 GTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVSEVSVI-GRNTGGVRLI 863

Query: 728 SLAKGDQVISMAIVLHADADYDE 750
              + + V+ +  V  +D D +E
Sbjct: 864 RTGEDETVVGLQRVAESDEDENE 886


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/899 (43%), Positives = 566/899 (62%), Gaps = 67/899 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  ++NK Y K ARI 
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D C +++ NP+  ++ L+E++  PDFPT  +I G  G+K  Y TGRG +V+RG +H E 
Sbjct: 191 LDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVVMRGRTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I++ E+PYQVNK  ++EKIAELV EK+I  I+DLRDESD+ G RVVIELKRG
Sbjct: 251 MDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              DV+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EVV RRT + L
Sbjct: 311 EIPDVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
            KAR+R HVL GLA+A+AN+DE++ II+ +P P  A+++LM +SW +  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRAAME 430

Query: 435 ----DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
               +  +   G     Y LS+VQ + IL++RL RLTGL +D I NE   +   I + LD
Sbjct: 431 AARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADLLD 490

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++ +R+  II  EL  ++ +    RR+ IVE   D+  ED I  +D+VVT+SH GY+K
Sbjct: 491 ILATAARVTAIITDELTEIRRQFGDKRRSEIVENAQDLSLEDLIAPQDVVVTLSHTGYIK 550

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PL  YRAQ+RGG+G+     +++DF+  +F+ +TH  +L FS+ G VY  KV+ +P G
Sbjct: 551 SQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVYWLKVYEVPQG 610

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  +RGK ++N+  L + E+I  I+     +S   N ++  AT  G V++  L++F    
Sbjct: 611 SRTSRGKPIVNLFPLEENEKINAILSV---KSFDENHFIFMATSLGTVKKTALTEFANPR 667

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           RSG IA+ LD  D ++  E     ND++L +  G+ V F    +R   GR + GVRG+ L
Sbjct: 668 RSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQM-GRATRGVRGMKL 726

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+  QV+S+ I                                    ND           
Sbjct: 727 AEDQQVLSLLIA----------------------------------SND----------- 741

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +Q ++  +E G+GKRT   DFR S R  +G++A  VS+ N  G +VA   V+D
Sbjct: 742 -------QQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERN--GLVVAAKLVSD 792

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            D+I+L++  G LIR  V+EIR   RAT+GV + +  + E++  +E+I E++  ++ E+
Sbjct: 793 EDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVETDDEEDGET 851


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/899 (43%), Positives = 563/899 (62%), Gaps = 71/899 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H LL D+ K+TVDF PNYDGS +EP+VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VD C+ ++  PD D++AL++I++ PDFPT  +I G  G++  Y TGRG +++R  
Sbjct: 186 NLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIYGLAGVREGYRTGRGRVIMRAR 245

Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E     DR+ I+V E+PYQVNK  + E++AELV EK+I  I+++RDESD+ G R+VI
Sbjct: 246 THFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN+L+++T LQ  F +NMVAL   KP    L  +L  F+  R EVV RR
Sbjct: 306 ELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGKPRLLNLKQMLVCFLEHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDR H+L GLA+A++N+DE++ +I+ +P P  A+RELM R W ++ +++++ 
Sbjct: 366 TIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVEEMLS 425

Query: 433 --LID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             L D       D  Y + + G   LSE Q +AILELRL RLTGL +D I  E   +   
Sbjct: 426 RALADSYRPEGLDPQYGLQAQG-YRLSEAQAQAILELRLQRLTGLEQDKIVGEYREVMDV 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL+   R+  II +EL +++++   PRR+ +V    ++  ED I  EDMVVT+S
Sbjct: 485 ITDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIEDLITPEDMVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY KR PL+ YRAQRRGG+G+    M+DEDF+  LF+ +TH +VL FS+ G  Y  KV
Sbjct: 545 HTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGRCYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662
           + +P G+  +RGK ++N+  L +GE+IT ++P  E DE      +V  AT  G V++  L
Sbjct: 605 YEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEH----FVFMATSEGTVKKTAL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + F    ++G IA+ LD  D ++ V     + D++L +  G+ VRF  + +R   GR++ 
Sbjct: 661 TAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDVRPM-GRDAR 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG++L  G  VI+M +                                          
Sbjct: 720 GVRGMTLEDGQAVIAMLVA----------------------------------------- 738

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                      K + Q +LT +E G+GKRT   ++    R  KG+ A   S  N  G LV
Sbjct: 739 -----------KDESQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GRLV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               V  +D+++L+S  G LIR  V  IR   R+T+GV + +  +   + S+E++ ESE
Sbjct: 786 GAVLVEPSDEVMLISTGGVLIRTSVESIREMGRSTQGVTLINLDEGTFLASIEKVAESE 844


>gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
 gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
          Length = 921

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/936 (43%), Positives = 561/936 (59%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G R+V
Sbjct: 246 SEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL+S  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY +K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636
           + +P  S  ARG+ L+N+L L +GERIT ++                             
Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDADDTVLEGEL 665

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                        PE  +     Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG Q+ISM     
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQQIISML---- 780

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I E   Q        ILT 
Sbjct: 781 -----------------------------------------IPESGAQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L+    V++ ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVHEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+   SR T+GV +   A DE +V +ERI+E
Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885


>gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 887

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/897 (45%), Positives = 561/897 (62%), Gaps = 71/897 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 STVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S +  ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ L+N+L L+ GE ITT++P    E      Y+  AT +G V++  L
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDDGEYITTMLPV---EEYTEGHYIFMATANGTVKKTPL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR + 
Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L +G ++ISM                                            
Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I EE  Q        ILT S +G+GKRT+  +F    R G+G+ A   +  N  G LV
Sbjct: 738 --IPEEGSQ--------ILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GRLV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               V D ++I+L+SD+GTL+R  V E+    R T+GV +   A DE +V +ER++E
Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLASDETLVGLERVQE 842


>gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2]
          Length = 864

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/905 (44%), Positives = 569/905 (62%), Gaps = 70/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   IFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L  DL K+TVDF  NYDGS  EP V  ARYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++  +A+ID+PD D + L+  + GPDFPT  +I G  GI+ AY TGRG +V+R  +H
Sbjct: 188 TEILNATIALIDDPDTDDETLLSHVPGPDFPTAGIINGAAGIREAYLTGRGRVVMRARTH 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     +  I+VTE+PYQVNKA ++E+IAELVREK+I  I +LRDESD+ G R+VIEL
Sbjct: 248 FEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +RG   DV+LN LY+ T +QS+F +NMVA+ G +P    L  IL  F+  R EVV RRT 
Sbjct: 308 RRGELPDVMLNNLYQQTQMQSVFGINMVAIVGGQPRTLGLRDILTVFLRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+RAH+L GLA+A+AN+D ++ +I+ +P    AR  LM ++W++  +  L++  
Sbjct: 368 YDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHALLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D ++         + +  D +  LS+ Q +AILE+RL RLTGL +D I  E  SL  +I 
Sbjct: 428 DAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSLLEKII 487

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + LDIL S SRL+ +I+ EL+++ +E    RRT IV    D+  ED I  ED VVT+S  
Sbjct: 488 DLLDILRSESRLMQVIRDELVAMIEEFGDARRTEIVFDYEDLSIEDLIAEEDRVVTLSRE 547

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K   LS Y++QRRGG+G+S   M+DED +  L + STH   L F++LG VY  KV++
Sbjct: 548 GYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGRVYWRKVYQ 607

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G+  ARG+ ++NIL L +GER+  ++P  E     ++ Y+ FAT  G V++  L DF
Sbjct: 608 LPQGARGARGRPVVNILPLQEGERVNALLPVRE---FVDDHYIFFATATGQVKKTPLVDF 664

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +  ++G IA+ L   D ++         +++L +  G+ +RF  + +R   GR + GVR
Sbjct: 665 SRPRQAGIIAIDLRDDDRLVGARLTDGSRELMLFSNAGKSIRFAEADVRSM-GRTAGGVR 723

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI + +  +V+S+                         L+ G+ + +T+           
Sbjct: 724 GIRMDEMQRVVSL-------------------------LVVGEGQVLTA----------- 747

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                             +E G+GKRT   DF +  R G+G+ A   S+ N  GALV   
Sbjct: 748 ------------------TEHGYGKRTPIDDFPLQGRGGQGVIAIQTSERN--GALVGAA 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D D++IL+SD GTL+R  +++I   SR T+GV++   + DE++V +  +    +  +
Sbjct: 788 LVQDEDEVILISDAGTLVRTEISQISSVSRNTQGVILIRLSDDEKLVQLAAVSAMSVDSD 847

Query: 906 AESTE 910
           A+  E
Sbjct: 848 ADRDE 852


>gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400]
 gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 909

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/922 (44%), Positives = 571/922 (61%), Gaps = 92/922 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 QKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I++P + ++ LME I GPDFPT A I GR GI +AY TGRG  ++R  + 
Sbjct: 188 TEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYNTGRGRAIMRSKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE+I+V EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE+K
Sbjct: 248 IETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAHVL  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++   
Sbjct: 368 ELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         + I  DG  YL+E Q +AILELRL RLTGL  D I  E   L + I  
Sbjct: 428 DDAARPEWLEPEFGI-RDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELLVLIAG 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL + SRL+ +IK+EL  + ++    RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L+ GE IT I+P  E     ++ Y++ AT HG V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLSDGEHITAILPVRE---YADDKYIIMATAHGTVKKTALTAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------------ 708
               +G IA+ L   D+++ V+     +DI+L +  G+ VRF                  
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAET 723

Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              I A+R   GR + GVRGI L  G +V+S+ +                          
Sbjct: 724 GEEIIALRPM-GRTATGVRGIKLDAGQKVVSLIVP------------------------- 757

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                    K D ++                   LTV+E G+GKRT   ++   +R  KG
Sbjct: 758 ---------KGDGAI-------------------LTVTENGYGKRTELSEYPAKSRGTKG 789

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + +  VS+ N  G +V    V   D+I+L+S+KGTL+R P   + I  R T+GV I  TA
Sbjct: 790 VVSIKVSERN--GEVVGAVQVGTFDEIMLISNKGTLVRTPAEGVSIIGRNTQGVTIIRTA 847

Query: 887 KDERVVSVERIRE---SEIVDE 905
           +DE+VV ++RI E    E++DE
Sbjct: 848 EDEKVVGLQRIEEIQTEELLDE 869


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/899 (45%), Positives = 565/899 (62%), Gaps = 75/899 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K +  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   EFAKEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL D+ K+TVDF  NYDGS +EP V   R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EVVD CVA+ID+P I +  LME + GPDFPT AVI G TGI  AY TGRG I +
Sbjct: 183 PPHNMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAAVINGATGIHEAYHTGRGRIYL 242

Query: 251 RGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E   G  R+ +VVTE+PYQVNKA +LEKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG   +VILN LY++T +Q++F +NMVAL   +P    L  +L+AF+  R EVV
Sbjct: 303 MVIELKRGEVPEVILNNLYQHTQMQNVFGINMVALVDGQPRLLDLKQVLEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S +P  A+  LM R+W +  + +
Sbjct: 363 TRRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDE 422

Query: 430 LI-----------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           ++           DL  D+++ I +DG  YLS+ Q +AIL+LRL RLTGL ++ + +E  
Sbjct: 423 MLARAGAATSRPEDL--DAAFGIHADG-YYLSDAQAQAILDLRLHRLTGLEQEKVVSEYK 479

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I + LDIL S  RL+ +I+ ELL ++++    RRT I+E  LD+  ED I  ED+
Sbjct: 480 ELLEKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLTLEDLITEEDV 539

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY K  P+S YRAQ+RGG+G+S    +DEDFV  L + STH ++L FSS G  
Sbjct: 540 VVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRGKA 599

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ LP GS  ARGK ++N+L L +GERI  I+P  E      +LYV  +T  G V+
Sbjct: 600 YWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVRE---YLEDLYVFMSTSSGTVK 656

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L DF +   +G IA+ L   D+++ V       D++L T  G+ +RF    +R   G
Sbjct: 657 KTPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPM-G 715

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ LA+  +VIS+ IV       DE    +   +   +    D         D
Sbjct: 716 RTACGVRGVRLAEDQRVISLIIV-------DEGTVLIATENGYGKRTPPD---------D 759

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V G              Q ++ +   G              R+G  + AT V+  +E+
Sbjct: 760 FPVHGRGG-----------QGVIAIQTGG--------------RNGAVVGATLVADEDEV 794

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                          +L++D GTL+R PV +I +  R T+GV +      E +V + R+
Sbjct: 795 ---------------MLITDGGTLVRTPVADISVLGRNTQGVRLIRLTDQEHLVELARV 838


>gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
 gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
          Length = 848

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/906 (44%), Positives = 562/906 (62%), Gaps = 100/906 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D         
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LTV+E G+GKRTS  +
Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842

Query: 877 TKGVVI 882
           T+GV +
Sbjct: 843 TQGVTL 848



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 15/132 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EIT+  +D  +E         EL  +E  ++T+S +G+ K     D+    R GKG  AT
Sbjct: 519 EITAATHDIDME---------ELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSAT 569

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887
            + + + I  L+     N +D I+L S +G   R+ V ++ +ASR  +G   V +    +
Sbjct: 570 KMKEEDYIERLLV---ANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEE 626

Query: 888 DERVVSVERIRE 899
           +ER+ ++  + E
Sbjct: 627 NERITAILPVTE 638


>gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
 gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
          Length = 886

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/896 (45%), Positives = 567/896 (63%), Gaps = 72/896 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 AEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +E T G   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 248 VE-TDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILPLKDILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +IR  P P  A+  L+ RSW    +  ++D 
Sbjct: 367 IFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAMLDR 426

Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 427 AGDDAARPEWLEPEYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +   L+ +I++EL+++K++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIRILQNPDCLMEVIREELVAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSRGRMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLESNERITAILPVREYEEGR---HVFMATASGTVKKTSLIE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSM-GRTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+LA+GD+V+S+ IV   +      +   +H   +R      T +        + +G 
Sbjct: 722 RGINLAEGDRVVSL-IVPRGEGPI---LTVTQHGYGKR------TAQAEYPTKSRATQGV 771

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           IS                               ++S R+G+ + A  V            
Sbjct: 772 IS------------------------------IKVSERNGEVVGAVQV------------ 789

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +D DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++ + E 
Sbjct: 790 ---DDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAQDEHVVGLQCVAEQ 842


>gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 928

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/941 (43%), Positives = 573/941 (60%), Gaps = 104/941 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILA 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L++GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +    G IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           GFGKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           V E+    R T+GV +   A DE++V +ER++E   V+  E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/900 (44%), Positives = 565/900 (62%), Gaps = 72/900 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K ARI 
Sbjct: 11  ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATNIP HN+ EV
Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D C A++ +P++ ++ L+E++  PDFPT  +I G  G+K  Y TGRG +V+RG +H+E 
Sbjct: 191 LDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVVMRGRTHVED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ ++V E+PYQVNK   +EKIAELV EK+I  I+DLRDESD+ G RVVIELKRG
Sbjct: 251 LERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A+V+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV+ RRT + L
Sbjct: 311 EIAEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVITRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
            KAR R H+L GLA+A+AN+DE++ II+ +P P  A+  LM ++WN+  +++++      
Sbjct: 371 KKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRAAME 430

Query: 435 ----DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
               +  S   G     Y LS++Q + IL++RL RLTGL +D + +E   +   I + LD
Sbjct: 431 ASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIADLLD 490

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++ +R+  II  EL  ++ +    RR+ IV    D+  ED I  +D+VVT+SH GYVK
Sbjct: 491 ILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVVTLSHTGYVK 550

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY  KV+ +P G
Sbjct: 551 SQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYWLKVYEVPQG 610

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           S   RGK ++N+  L +GE+I  I+   E DE    N ++  AT  G V++  LSDF   
Sbjct: 611 SRTGRGKPIVNLFPLEEGEKINAILSVKEFDE----NHFIFMATSLGTVKKTPLSDFANP 666

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG IA+ LD  D ++  E     ND++L +  G+ V F    +R   GR + GVRG+ 
Sbjct: 667 RKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSM-GRATRGVRGMK 725

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA   QV+S+ I   AD D                                         
Sbjct: 726 LADNQQVLSLLI---ADND----------------------------------------- 741

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +Q +L  +E G+GKRT   DFR S R  +G++A  +S+ N  G +VA   VN
Sbjct: 742 --------QQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERN--GLVVAAKLVN 791

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++D+I+L++  G LIR  V EIR   RAT+GV + +  + E++  +E+I ES   D+ ES
Sbjct: 792 EDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKIVES---DDPES 848


>gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/941 (43%), Positives = 573/941 (60%), Gaps = 104/941 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILA 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L++GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +    G IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           GFGKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           V E+    R T+GV +   A DE++V +ER++E   V+  E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889


>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/898 (45%), Positives = 568/898 (63%), Gaps = 74/898 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I S+  +  + I +VSI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R  L++GQGNFGSV
Sbjct: 60  RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF P YD S  EP+V  AR PN+LVNG  
Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG  I GR GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR   HIEK    RE IV+TEIPYQ NK+ +LEKIA L++EKRI  IA+ R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELK+   A+V++NQLY+ T LQ  F + M+++   +PE   L  IL+ 
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR  L+ R
Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E ++L
Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI     +L   S ++ II++E  ++++     RRT I++   ++  ED I RE+MVV
Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+  YR+QRRGGKG  G    DEDFV+ + + STH ++LFFS+ G V+ 
Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E +     Y++ ATK G V++
Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +  + GKIA+ +   DEIL     T +N++LL ++ G  VRF    IR   GR
Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAM-GR 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+LA GD+              DE I          +++SGD           
Sbjct: 693 GASGVRGITLAAGDE--------QKGIPADELIGL--------QVLSGDP---------- 726

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  IL VSE GFGKR+   ++R+  R GKG+ A   S+ N  G
Sbjct: 727 -----------------EASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERN--G 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +V +  V D+DQ+++++++G +IR+P+  IR+  R+T+GV +F+   +E+VV+++R+
Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRL 825



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +++  +E+ ++TV+  G+ KR     +R   R GKGI+    +  + +  +      + +
Sbjct: 503 EDMIAREEMVVTVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQV---ASTH 559

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++  S+KG +    V EI  A R  +G   V +     +E+V ++  +   E+ +
Sbjct: 560 DTLLFFSNKGRVFWRKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616


>gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13]
 gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40]
 gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 928

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/941 (43%), Positives = 573/941 (60%), Gaps = 104/941 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILA 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L++GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +    G IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           GFGKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           V E+    R T+GV +   A DE++V +ER++E   V+  E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/906 (45%), Positives = 572/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K++  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G     Y LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  + +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K DQ +   +V+  +                     G T  +T+ +N      +
Sbjct: 722 RGIRVEK-DQAVKSLVVVDPN---------------------GGT-ILTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E R             VS +G                G+G+ +  V++ N  G +V  
Sbjct: 759 IDEYR-------------VSGRG----------------GQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010]
 gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010]
          Length = 859

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/895 (44%), Positives = 557/895 (62%), Gaps = 68/895 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S+ I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  WN  Y K A
Sbjct: 8   LDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K  H +L DL K+TVDF  NYD S  EP VL  + P +LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  +A+IDNP+I +  LME I GPDFPT A+I G  GI  AYATGRG + IR  + 
Sbjct: 188 TEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGARGIAEAYATGRGRVHIRARAD 247

Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      +Q IVV E+PYQVNKA +LEKIAELV+EK+I  I  LRDESD+ G R+VI L
Sbjct: 248 IETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIVL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +RG   +V+LN LY+ T +Q++F +NMVA+   +P    L  +L AF+  R EVV RR+ 
Sbjct: 308 RRGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQPRTLNLKDVLAAFIRHRREVVTRRSI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI--- 431
           + L KARDRAH+L GLA A+AN+DEV+ +I+ SPNP  A+  L+ R W +  I +++   
Sbjct: 368 FDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGEA 427

Query: 432 ----DLIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  +D     G  D   +LS  Q +AIL++RL RLTGL +D I  E   +   I E
Sbjct: 428 GAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDLIGE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L ILS    L+ +I+ EL+++  E    RRT I+   LD+  ED I  E+MVVT+SH G
Sbjct: 488 LLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANHLDLTLEDLITEEEMVVTLSHAG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   L  Y+AQ+RGGKG++   M+DEDF+  LFI +TH ++L FSS G VY +KV+ L
Sbjct: 548 YAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGKVYWKKVYEL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G   ARGK ++N+L L +GERI  ++   E E+   + ++  AT  G V++  L D+ 
Sbjct: 608 PQGGRTARGKPIVNLLPLEEGERINAVLSIREFEA---DKFIFMATASGTVKKTPLVDYS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L   D+++ V      +DI+L +  G+ +RFP + +R   GR S GVRG
Sbjct: 665 RPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSM-GRVSRGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + +A  +++IS+ I                                              
Sbjct: 724 MRIADNEKIISLII---------------------------------------------- 737

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               QE    E  ILT +E G+GKRT+  ++R+  R G+GI +   S  N  G++V    
Sbjct: 738 ---AQE----EGAILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRN--GSVVGAVQ 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V D DQI+L+++ GTL+R PV ++ +  R T+GV + + +K+E++V VER+ E E
Sbjct: 789 VCDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNEKLVGVERVLEDE 843


>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/898 (45%), Positives = 568/898 (63%), Gaps = 74/898 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I S+  +  + I +VSI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R  L++GQGNFGSV
Sbjct: 60  RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF P YD S  EP+V  AR PN+LVNG  
Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG  I GR GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR   HIEK    RE IV+TEIPYQ NK+ +LEKIA L++EKRI  IA+ R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELK+   A+V++NQLY+ T LQ  F + M+++   +PE   L  IL+ 
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR  L+ R
Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E ++L
Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI     +L   S ++ II++E  ++++     RRT I++   ++  ED I RE+MVV
Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+  YR+QRRGGKG  G    DEDFV+ + + STH ++LFFS+ G V+ 
Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E +     Y++ ATK G V++
Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +  + GKIA+ +   DEIL     T +N++LL ++ G  VRF    IR   GR
Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAM-GR 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+LA GD+              DE I          +++SGD           
Sbjct: 693 GASGVRGITLAAGDE--------QKGIPADELIGL--------QVLSGDP---------- 726

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  IL VSE GFGKR+   ++R+  R GKG+ A   S+ N  G
Sbjct: 727 -----------------EASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERN--G 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +V +  V D+DQ+++++++G +IR+P+  IR+  R+T+GV +F+   +E+VV+++R+
Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRL 825



 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +++  +E+ ++TV+  G+ KR     +R   R GKGI+    +  + +  +      + +
Sbjct: 503 EDMIAREEMVVTVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQV---ASTH 559

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++  S+KG +    V EI  A R  +G   V +     +E+V ++  +   E+ +
Sbjct: 560 DTLLFFSNKGRVFWRKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616


>gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
 gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
          Length = 845

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/891 (44%), Positives = 563/891 (63%), Gaps = 90/891 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I  V I  EM+NS++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM  +G   +K +
Sbjct: 8   KDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLGFTPDKAH 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA   GEV+GKYHPHG+AA+YD++ RMAQD+SLR  L++G GNFGSVDGDPPAA RYT
Sbjct: 68  RKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDPPAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  ++ D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 128 EARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EV+DG V VI+ P   +D L +II+GPDFPT  +I+G++GI++AY TGRG I++R
Sbjct: 188 PQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIVGKSGIRDAYRTGRGRIIMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V++IE+ S ++++IVVTE+PYQVNKA ++EKIA+LV+EKRI +I+DLRDESDR G R+V
Sbjct: 248 AVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDESDRTGMRIV 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFRE 366
           IELKR A+A+++LNQL+++T +Q  FSVNM+AL       ++P    L   +  +V  ++
Sbjct: 308 IELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAIDHYVDHQK 367

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ L+KA  RAH+L GL IA+ NLDEV+RIIR S N   A+  LM+R      
Sbjct: 368 DVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMER------ 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  SE Q +AI+++RL RLT L R+ +  E   L  +IK 
Sbjct: 422 --------------------FSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAKIKY 461

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             D+L++   +L IIK+EL  +K +    RRT+I+    D + ED I  +D V+T++H G
Sbjct: 462 YKDVLANEFMVLDIIKEELGEIKGKFGDERRTKIIPDETDFDVEDLIEEQDSVITLTHFG 521

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P   Y++QRRGGKG  G+  R+EDFV +LF  STH  ++FF++ G VY+ K + +
Sbjct: 522 YVKRLPTDTYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEI 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    QA+G A++N+L L+Q E++TT++P  E +     +Y++ ATK+G V++  L ++ 
Sbjct: 582 PEAGRQAKGTAIVNLLQLDQEEKVTTVIPIKEYKEG---MYLILATKNGVVKKTDLMEYD 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I + G  A+ L   DE++ V       DILL TK G  +RF    +R   GR S GVRG
Sbjct: 639 HIRKGGLTAVALRENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPL-GRVSQGVRG 697

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D VI M + +                            E TSL           
Sbjct: 698 IKLDDDDVVIGMGVFI----------------------------EDTSL----------- 718

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                         L V+E+GFGKRT   ++++  R GKGI    V++  + G +  +  
Sbjct: 719 --------------LVVTERGFGKRTELEEYKVQTRGGKGILTYRVTE--KTGKIAGMKL 762

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VN+ D ++L+S  GT+IR+ VN+I +  RAT+GV +    +   +V + RI
Sbjct: 763 VNEKDDVMLISSDGTIIRINVNDISVLGRATQGVTLMRMDESVYLVGIARI 813


>gi|167036442|ref|YP_001664020.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/891 (44%), Positives = 563/891 (63%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGSVDGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  + E      Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIK---YIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V H +++                                           
Sbjct: 692 EDDEVVEMDLV-HPNSE------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 708 ---------ILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807


>gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 928

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILT 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L++GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +    G IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
          Length = 890

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/905 (44%), Positives = 568/905 (62%), Gaps = 67/905 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDG KPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGDP AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH  L D+ K+TVDF PNYDGS +EP+VL  R PN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 131 AHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ V+ NP   +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHVLKNPGASIDELMEIIPAPDFPTAGIIYGMQGVKDGYRTGRGRVVMRARCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK ++LE+IAELV EK+I  I+ ++DESD+ G RVVIELKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL G +P+   L  ++  F+  R EVV RRT + L
Sbjct: 311 ELPEVVLNNLYKQTQLQDTFGMNMVALVGGQPKLCNLKDLIVVFLDHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI------ 431
            KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVREMLTRSRAD 430

Query: 432 -DLIDDSSY---------TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
             +I+   Y          + +DG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
            EI+  LDIL+   R+  I+ +EL  +K E        RR+ +     D+  ED I  ED
Sbjct: 491 AEIENLLDILARPERVAAIVGEELAGIKQEFGQTKLGARRSVVEHNAQDLATEDLIAPED 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 KVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++P   + SS+ ++ YV  AT+ G 
Sbjct: 611 LYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSSFPSDHYVFMATRMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F    ++G IA+ LD+ D ++        +D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSDGGKAVRFDENDVRPM 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVRG+ L  G  VI+M                         L++ D       +
Sbjct: 731 -GRNARGVRGMMLDDGQSVIAM-------------------------LVAQD-----ETQ 759

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           ND + E   +             +LT +E G+GKRT   ++    R  KG+ A   S+ N
Sbjct: 760 NDVNGEAARTS------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQQSERN 807

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +     ++  ++R
Sbjct: 808 --GKVVAATLVHTDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIALDDGTQLSGLQR 865

Query: 897 IRESE 901
           I E++
Sbjct: 866 IVEND 870


>gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2]
 gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2]
          Length = 871

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/900 (43%), Positives = 565/900 (62%), Gaps = 70/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ DEMQ SYL+YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  WNK Y K A
Sbjct: 8   ILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TV+F PNYDGS  EP VL  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E V  C+A+IDNP++ +  LME + GPDFPT  +I G  GI+ AY TGRG + +R  + 
Sbjct: 188 NETVSACIALIDNPELTISELMEFLPGPDFPTYGIINGTKGIREAYETGRGRVQMRARTS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     +  I+V EIPYQVNKA ++E+IAELV+EK+I  I+ LRDESD+ G R+VIE+K
Sbjct: 248 VETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIEVK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V++N LY+ T++Q++F +NMVAL   +P+   L  +L+AF+  R EVV RRT Y
Sbjct: 308 RGEVPEVLINNLYKQTTMQTVFGINMVALINSQPKLLNLKDVLEAFIRHRREVVTRRTIY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR++AH+L GLA+A+ N+DE++ +I+ SP+P  A+  +++R W+  +++ L++ ++
Sbjct: 368 DLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLEKVE 427

Query: 436 -------DSSYTIGSDGT--MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  D     G+DG+    LS  Q +AILE+RL RLTGL +D I  E   L ++I E
Sbjct: 428 MKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L+IL +  RL  ++++EL  V +     RRT I     D++ ED I  E+ +VT+S  G
Sbjct: 488 FLEILRNPDRLTEVVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVTLSRDG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K  PLS Y+AQRRGG+G+S   M+++D +  + + STH  +L FS+ G +Y +K W+L
Sbjct: 548 YIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQKTWQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++GK ++N+L L  GE IT+I+P  E    +   YV  ATK   V+R  LSDF 
Sbjct: 608 PLASRGSKGKPIVNVLPLETGEHITSILPVSEFSEGY---YVFMATKQSTVKRVALSDFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L   DE++       E DI+L + +G+ +RF  + +RV  GR + GVRG
Sbjct: 665 RPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVM-GRQARGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G     M+I+                                             
Sbjct: 724 MKLKDG-----MSII--------------------------------------------- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                ++  K+  ILT +E G+GK T   D+   NR G+G+ +   S  N  G +V    
Sbjct: 734 ---SMQVARKDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRN--GNVVYSVA 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV--SVERIRESEIVD 904
           V  + +++L+++KGTL+R  V+EI +  R T+GV + +  K E VV  +V  ++E E+ D
Sbjct: 789 VTPDQEVVLITNKGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDELPD 848


>gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
 gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
          Length = 905

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/901 (44%), Positives = 563/901 (62%), Gaps = 75/901 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ S+L YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y+K
Sbjct: 15  KETVPISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVWNRPYLK 74

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG++AIYD + RMAQD+SLR  L++GQGNFGSVDGDPPAA RYTE 
Sbjct: 75  SARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAAMRYTEI 134

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  ++ D+ KDTVDF PNYDGS  EP VL A+ PN+L+NG  GIAV MATNIP H
Sbjct: 135 RLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMATNIPPH 194

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV  C+ +++NPD  +D L+E I  PDFPTGA+I G  G++  Y TGRG +V+R  
Sbjct: 195 NLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGALIYGVAGVREGYRTGRGRVVMRAK 254

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           +H E    +G+R+ I+V EIPYQVNKA + +KIAELV EK+I  I+D+RDESD+QG RVV
Sbjct: 255 THFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDKQGMRVV 314

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG +A+V+LN L++ T LQ  F +NMVAL   +P    L  +L+AF+A R EVV R
Sbjct: 315 IELKRGENAEVVLNNLFKLTQLQDSFGINMVALVDGQPRLLNLKQVLEAFLAHRREVVTR 374

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y LNKARDR H+L GLA+AV N+DE++ +I+ SP P  A+  L+ R+W A    +++
Sbjct: 375 RTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKERLLARTWAAGIAAEMV 434

Query: 432 DLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +              D +  +  DGT  LSEVQ   IL++RL RLTGL ++ I  E   +
Sbjct: 435 ERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIVTEYREV 494

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVRE 536
              I + LDIL+  +R+  II+ EL  V +E       PRR++I     +++ ED I  +
Sbjct: 495 VDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIEDLITPQ 554

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVT+S+ GY+K  PLS YR+QRRGG+G+     +D+D+V  LFI +TH ++L FS  G
Sbjct: 555 DMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTILCFSDRG 614

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  KVW +P GS  +RG+ ++N+  L + E+IT ++P    ++  +  YV  AT  G 
Sbjct: 615 RVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPI---KTFDDEHYVFMATSLGT 671

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  LSDF    ++G IA+ LD  D ++       E+D++L +  G+ VRF    +R  
Sbjct: 672 VKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSEGDVRAM 731

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVRG++L +G +VI+M   L AD   DER                         
Sbjct: 732 -GRTARGVRGMALEEGQKVIAM---LVAD---DER------------------------- 759

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                + +LT +E G+GKRT   +     R  KG+ A   S+ N
Sbjct: 760 ---------------------RSVLTATENGYGKRTPLIEHTRHGRGTKGMIAIQSSERN 798

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V + D+I+L++  G L+R  V+EIR   RAT+GV +    + + +  V+R
Sbjct: 799 --GRMVAAILVEEGDEIMLITTGGVLVRTRVDEIREMGRATQGVTLIGVEEGDTLSRVQR 856

Query: 897 I 897
           +
Sbjct: 857 V 857



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 9/143 (6%)

Query: 762 RRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
           R  ++G  EE    + D   S +E N SE   ++L   +  ++T+S  G+ K     ++R
Sbjct: 516 RDELTGVVEEFGGPEKDPRRSQIELNASEIDIEDLITPQDMVVTLSNSGYIKAQPLSEYR 575

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R G+G +A      + +  L   F  N +D I+  SD+G +  + V E+   SRA++
Sbjct: 576 SQRRGGRGKQAASTKDDDWVDQL---FIANTHDTILCFSDRGRVYWLKVWEVPQGSRASR 632

Query: 879 G---VVIFSTAKDERVVSVERIR 898
           G   V +F  A++E++  V  I+
Sbjct: 633 GRPIVNMFPLAENEKITVVLPIK 655


>gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 925

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 928

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 928

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 925

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 928

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 571/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L++G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLSEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/891 (44%), Positives = 563/891 (63%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  + E      Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIK---YIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V H +++                                           
Sbjct: 692 EDDEVVEMDLV-HPNSE------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 708 ---------ILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807


>gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 928

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILT 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------------PEDESSW 643
            + +P  S  ARG+ L+N+L L+ GE ITT++P                     +D  + 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEAELDDAENS 664

Query: 644 NNL-----------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           N                   ++  +T +G V++  L  F +    G IA++LD  D ++S
Sbjct: 665 NETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/891 (44%), Positives = 563/891 (63%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  + E      Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIK---YIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFDEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V H +++                                           
Sbjct: 692 EDDEVVEMDLV-HPNSE------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 708 ---------ILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807


>gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB]
 gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB]
          Length = 890

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/909 (44%), Positives = 571/909 (62%), Gaps = 86/909 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I+N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR    
Sbjct: 188 REVINGCLAYIENEDISIEELMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLDPQYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILS   RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILSDADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           GI LA+GD+V+S+       AI+      Y +R    ++ +  R                
Sbjct: 723 GIRLAEGDRVVSLIVPREEGAIMTVTQNGYGKRTANSEYPTKSR---------------- 766

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            + +G IS                               +++ R+G  I A  V      
Sbjct: 767 -ATQGVIS------------------------------IKVTERNGPVIGAVQVV----- 790

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
                     D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ 
Sbjct: 791 ----------DGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRV- 839

Query: 899 ESEIVDEAE 907
            +E V+E E
Sbjct: 840 -AEPVEEEE 847


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/905 (44%), Positives = 562/905 (62%), Gaps = 72/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KETLPVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H LL D+ K+TVDF PNYDGS +EP+V+ AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++D C+A+++N ++ +D L++++ GPDFPT  +I G  G++  Y TGRG +V+RG 
Sbjct: 186 NLGEIIDACLALLNNAEVTIDELIDLVPGPDFPTAGIIYGVAGVREGYRTGRGRVVMRGR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           +H E      +R+ I++ E+PYQVNK  +LEKI ELV EKRI  I+DLRDESD+ G RVV
Sbjct: 246 THFEDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG  A+V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV+ R
Sbjct: 306 IELKRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLRHRREVLTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+RAH+  GLA+A+ N+DE++ +I+ SP P  ARR LM R W +  + +++
Sbjct: 366 RTVFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEML 425

Query: 432 D--LIDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
               +D +        Y + + G + LSE Q +AILELRL RLTGL RD I  +   L  
Sbjct: 426 QRAALDATRPQGLGLEYGLSASGYL-LSEAQAQAILELRLQRLTGLERDKIVADYGELLA 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I + +DIL+   R+  +I +EL +++ +    RR+ IV    D+  ED I   DMVVT+
Sbjct: 485 RIADLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMVVTL 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+K  PL+ YRAQRRGG+G+    M+ +DFV  LF+ +TH  +L F++ G VY  K
Sbjct: 545 SHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P G+  +RGK ++N+    +GE+I+ I+P  E     ++ Y+   T  G V++  L
Sbjct: 605 VYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKE---FTDDRYIFMCTAQGTVKKTPL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF    ++G IA+ LD  D ++  E      D++L +  G+ V F    +R   GR + 
Sbjct: 662 SDFSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPM-GRTAR 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ LA   QV+S+   L AD D                                   
Sbjct: 721 GVRGMRLADQQQVLSL---LVADND----------------------------------- 742

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +Q +L  +E GFGKRT   DFR S R  +G+ A   S+ N  G +V
Sbjct: 743 --------------QQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERN--GRVV 786

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V D D+I+L++  G LIR  V EIR   RAT+GV + +    E++  +E+I E+E 
Sbjct: 787 AARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGEKLAGLEKIVETE- 845

Query: 903 VDEAE 907
            D+AE
Sbjct: 846 -DDAE 849


>gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8]
 gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8]
          Length = 856

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/898 (45%), Positives = 567/898 (63%), Gaps = 77/898 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQGIINGRAGIVEAYRTGRGRIYIRAR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             IE  K +G RE I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G RVV
Sbjct: 246 HEIEQDKKTG-RESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG + DVI+N L+  T L+++F +NMVAL   +P+   L  +L AFV  R EVV R
Sbjct: 305 IELRRGENPDVIINNLFAQTQLETVFGINMVALINGEPKTLNLKEMLDAFVRHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+   A+ +LM + W   D+  ++
Sbjct: 365 RTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLAML 424

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         DD     G  +G  +LS  Q +AIL+LRL RLTGL  + ++NE   +  +
Sbjct: 425 ERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEILEK 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL    RL+ +I+ EL  +  +    RRT I     D+   D I  ED+VVT+S
Sbjct: 485 IADLLDILGDPERLMQVIRDELAEIVSQYGDERRTEITSSRRDLTIADLIDEEDLVVTIS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K   +  Y+AQRRGG+G++   M+DEDF+  L + ++H ++L FS+ G VY  +V
Sbjct: 545 HSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKGKVYWLRV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660
           + +P GS  +RG+ ++NIL L++GERITT +P   +PED+      +V+ AT  G V++ 
Sbjct: 605 FEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYPEDQ------FVLMATSAGVVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +   SG IA+ LD  D ++         +++L +  G+ VRF    +R  + R 
Sbjct: 659 PLPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMS-RT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI + +G  V+S+ I                                        
Sbjct: 718 ARGVRGIKMPEGHHVVSLII---------------------------------------P 738

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            EG +              ILT SE G+GKRT+  +F   +R  +G+ A   S+ N  G 
Sbjct: 739 QEGGV--------------ILTASEHGYGKRTAIDEFPAYSRGSQGVIAMQCSERN--GN 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
           LV    + D DQ++L+SDKGTL+R   +E+ + SR T+GV +   A+ DER+V VERI
Sbjct: 783 LVTALQLFDGDQMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIRLAQEDERLVGVERI 840


>gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
 gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
          Length = 856

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/894 (45%), Positives = 571/894 (63%), Gaps = 58/894 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR+
Sbjct: 9   AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARV 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGSVDGD PAA RYTE R+ +
Sbjct: 69  VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMYQ 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL D+ K+TV+  PNYD S +EP+VL A++PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 129 LAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLAE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG VAVI NP++  + L+ +I GPDFPT   I GR GI +AY+TGRG I +R  + +E
Sbjct: 189 VIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIYGREGILSAYSTGRGIIQMRARAIVE 248

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +R+ IVVTEIPYQVNKA ++EKIAELVREK+I  I+DLRDESDR+G RVV+ELK+
Sbjct: 249 THKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRVVVELKK 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +  ++LN LY+ T +QS F + M+A+   +P+  TL   +  F+  R E+V RRT + 
Sbjct: 309 DENPQIVLNHLYKQTQMQSSFGIIMLAIVNNRPKVLTLRETINHFIDHRREIVTRRTIFD 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+  LD V+ +IR S NP  A+  LM   ++  +    + L   
Sbjct: 369 LKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEWLKKLGLSLP 428

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +++   +   M LSE+Q +AILE+RL RLTG+ RD I +E + +   I    +IL+S + 
Sbjct: 429 ANHAEYAKPVM-LSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLKEILASETE 487

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L II  ELL +K++    RRT I++   ++  ED IV EDMVVT+SH GY+KR  +++Y
Sbjct: 488 ILKIIVGELLELKEKFGDKRRTEIIDQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTMY 547

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG++G+  ++EDFV  LFI S+   ++FF+  G VY  KV+ +P      RGK
Sbjct: 548 RAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGK 607

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L+L+  E+IT I+P  E  +   + +++ AT+HG V++  L ++      G IA+
Sbjct: 608 AIVNLLNLSANEKITAILPVKEFAA---DKFIMMATRHGVVKKTPLMEYSHPRLGGIIAV 664

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D+++SV       D+LL ++ G+ +RF  S +R   GR S GVRG++L   D VI
Sbjct: 665 NLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRT-VGRVSRGVRGMTLEDDDVVI 723

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M I+                            EE T    DS+                
Sbjct: 724 GMEII---------------------------NEEYT----DST---------------- 736

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              + TV+E GFGKRT   ++R  +R GKGI     ++ N  G +V +  V D + ++L+
Sbjct: 737 ---LFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTERN--GCVVDIKQVVDENDLMLI 791

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +D+G ++RVPV    I  R T+GV +  T  DERVV+V R+ E E  D  EST+
Sbjct: 792 TDQGKILRVPVEGFSIIGRNTQGVRLMVTEDDERVVAVARLAEKEEDDADESTD 845


>gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 808

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/895 (44%), Positives = 564/895 (63%), Gaps = 88/895 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + G ++NK Y 
Sbjct: 2   ESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDA+ RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE
Sbjct: 62  KSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL DL K+TVDF PNYDGS QEP+VL AR PN+L+NG  GIAVGMATNIP 
Sbjct: 122 VRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV +  +A I NP I L  LM I+ GPDFPT   I G  GI  AY TG+G I +R 
Sbjct: 182 HNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGSDGIAEAYRTGKGLIRLRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + +E+  G RE I++ E+PYQVNK  ++E+I ELV++K+I  I D+RDESDR+G RVVI
Sbjct: 242 RTFLEQRGG-REYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRVVI 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L++   A  ILNQL+ +T++Q  + +N+VA+   +PE  +L  +L  F+  R EV+VRR
Sbjct: 301 QLRKDELAQPILNQLFAHTNMQVTYGINLVAIVNNRPELLSLKDLLTEFLKHRREVIVRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KA +RAH+L GL IA+ +LD+++ +IR + +P TAR +L++R            
Sbjct: 361 TLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVER------------ 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ +AILE+RL RLTGL R  I +E   L  +I    +IL+
Sbjct: 409 --------------FTLTEVQAQAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILA 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + + +  +I+ +L+ ++D    PRRT I+    ++  ED I  EDMVVTVSH GY+KR P
Sbjct: 455 NEALVYQLIEADLIDLRDRYGDPRRTEIIPETAELTLEDLIPDEDMVVTVSHQGYIKRNP 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L++YR+QRRGGKGR+G+ ++++DFV+ L+I STH   L FS+LG +Y  KV  +P+GSP 
Sbjct: 515 LNLYRSQRRGGKGRTGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPS 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA++N+L+    E++TTI+P  E        Y+V ATK G +++ +L +F +    G
Sbjct: 575 ARGKAIVNLLNFGSQEKLTTILPIREFVPEH---YLVMATKRGIIKKTELMNFSRPRSGG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA  LD  DE++SV       ++ L T LG+ +RF    +R   GR++ GVRG+++A+ 
Sbjct: 632 LIACTLDEGDELVSVALTDGNKEVFLGTSLGKIIRFAEQDVRDM-GRSARGVRGMTVAED 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++ M I+                                      S EG         
Sbjct: 691 DCIVGMEIL--------------------------------------SAEGA-------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILTV+  G+GKRT   ++R+  R G G+ A  ++  N  G +V +  V ++D+
Sbjct: 705 -------ILTVTANGYGKRTRHEEYRLQKRGGSGLLALRITDRN--GPVVGIIQVTEDDE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+L++D+G +IR+PV  I +  R T+GV +  T  +ERVVS+ R+ E    DE E
Sbjct: 756 IMLITDRGKIIRLPVTGISLIGRVTQGVKLIDTEPEERVVSIARLAEKG--DEGE 808


>gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9]
 gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9]
          Length = 859

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/918 (44%), Positives = 569/918 (61%), Gaps = 73/918 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H+ +      K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDHLFA------KETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WN+ Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGS+
Sbjct: 55  HELSNDWNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL D+ K+TVDF PNYDGS  EP+VL A+ PN+L+NG  
Sbjct: 115 DGDNAAAMRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD  +A++ N D+ +D L++II  PDFPT  +I G  G++  
Sbjct: 175 GIAVGMATNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIYGLAGVREG 234

Query: 241 YATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y +GRG +VIR  +H+E    GDR+ +++ E+PYQVNKA +L KI ELVREK I  I+DL
Sbjct: 235 YRSGRGRVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDL 294

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P    L  IL+
Sbjct: 295 RDESDKSGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQPRLLNLKQILE 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R EVV RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P  A+ ELM 
Sbjct: 355 EFLRHRREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMA 414

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRD 471
           R W +  +++++  +       D      G     Y LSE Q +AILELRL RLTGL +D
Sbjct: 415 RQWRSPLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQD 474

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +   I + LDIL+   R+  II  EL  +K +    RR+ I     D+  ED
Sbjct: 475 KIVAEYRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGDTRRSEIEPFGGDINLED 534

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GY+K  P++ Y+AQRRGG+G+     +DEDF+ +LF+ +TH  +L 
Sbjct: 535 LITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDFLLC 594

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV+ LP GS Q+RGK ++N+L L +GE+I  I+P    +   +  YV  A
Sbjct: 595 FSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPV---KGFSDTEYVFMA 651

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  LS F     +G IA+ LD  D ++     +  ++++L +  G+ VRF  +
Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GRN+ GVRG+ L    QVI M                         L+S     
Sbjct: 712 DVRPM-GRNARGVRGMELGDAQQVIGM-------------------------LVS----- 740

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                         +EE  Q        +LT +  G+GKRT   D+R S R  +G+ A D
Sbjct: 741 --------------NEETSQ--------VLTATANGYGKRTPIGDYRKSRRGTQGVIAID 778

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + N  GALVAV  V D+D+++L++  G LIR  V+E+R   RA +GV + +    E++
Sbjct: 779 TGERN--GALVAVALVADSDELMLMTTGGVLIRTRVSEVRETGRAAQGVRLINLDAGEQL 836

Query: 892 VSVERIRESEIVDEAEST 909
           VS+E+I ES+  D+ + T
Sbjct: 837 VSLEKIAESDEPDDTDET 854


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/905 (43%), Positives = 571/905 (63%), Gaps = 67/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLREVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW++  ++D++ 
Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLS 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I  +D
Sbjct: 486 REVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G 
Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  AT  G 
Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSKGT 661

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R  
Sbjct: 662 VKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPM 721

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVRG++L  G QVI+M +   A A+                         T+ +
Sbjct: 722 -GRQARGVRGMNLEDGQQVIAMLV---APAE-------------------------TAGE 752

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + +V G+               +LT +E G+GKRT   ++    R  KG+ A   S+ N
Sbjct: 753 GEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  ++R
Sbjct: 798 --GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQR 855

Query: 897 IRESE 901
           + ES+
Sbjct: 856 VVESD 860


>gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 928

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +     S         Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLNPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 561/886 (63%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V + +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  +K + K A
Sbjct: 7   VLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+GK+HPHG+ A+YDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 67  HIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ K+TVDF PNYD S +EPVVL +R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 127 AKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG V +ID+P++++  LM+II+GPDFPTG  I+GR GI+ AY TGRG+I +R V+ 
Sbjct: 187 REVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVTT 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            EK SG +  I+VTE+PYQVNKA ++EKIAELVR+K+I  IADLRDESDR+G R+VIELK
Sbjct: 247 FEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LNQL+++T LQ  F + M+AL   +P    L  IL  ++  +++VV RRT+Y
Sbjct: 307 RDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTRRTRY 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR  LM R               
Sbjct: 367 DLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFG------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q +AIL++RL RLT L R+ I  E   L  +I+    IL+   
Sbjct: 414 -------------LTEKQAQAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADER 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LLG+I+QELL +K++    RRT+I       ++ED I  EDMV+T++H GY+KR+P+  
Sbjct: 461 VLLGVIRQELLEIKEKYGDARRTQITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDT 520

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGG+G + +  ++EDFV  LF+ STH  +LFF++ G VY+ KV  +P    QA+G
Sbjct: 521 YKNQRRGGRGVTAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKG 580

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N+L ++Q ERIT I+P  E     ++ Y+   TK+G V++  LS++    R G IA
Sbjct: 581 TPIVNLLYVDQDERITAIIPVKE---FTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIA 637

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D+++ V+  T + ++++ TK G  +RF  + +R   GR + GV+GI+L+ GD+V
Sbjct: 638 LSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPM-GRTARGVKGITLSPGDEV 696

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I + +V                                    D   E             
Sbjct: 697 IGLEVV------------------------------------DEQAE------------- 707

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +LTV+ KGFGK+T   ++R+  R GKGI    V++ N  G +V +  V   D+++ 
Sbjct: 708 ----LLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKN--GEVVGIVAVRPEDEVMA 761

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +S +G +IRV   EI    RAT+GV +    KD+++ +V +I   E
Sbjct: 762 ISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQE 807


>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 845

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/904 (44%), Positives = 571/904 (63%), Gaps = 68/904 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K    VS+  EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +M  +WNK 
Sbjct: 3   EFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R  LI+GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH +L DL K+TVDF PNYD    EP+V+ AR PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSRIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+  C+A++D+P+   + L  ++  PDFPT   I GR G   AY TGRG +V+
Sbjct: 183 PPHNLTEVISACLALVDDPETPDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVM 242

Query: 251 RGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R     E     +R+ I+VTE+PYQVNKA ++E+IAE+V+EKR+  I+DLRDESD+ G R
Sbjct: 243 RARCEFETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELKR A+ADV+LN LY++T +QS+F++NMVAL    P    L  +L+AF+  R EVV
Sbjct: 303 IAIELKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L GLA+A+ NLD ++ +IR + +P  A+ +++ +SW    +  
Sbjct: 363 TRRTVFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAA 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+    + S  + +DG  +LSE+Q +AIL+LRL RLTGL +D IR+E  +L   I+E L+
Sbjct: 423 LLVERGEPSEGMHADG-YHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S++RL+ +I++EL++++D+    RR+ IV    D+  ED I  E+MVVT +H GY+K
Sbjct: 482 ILGSKTRLMEVIREELVAIRDQYGDARRSEIVADTGDISTEDLITEEEMVVTFTHAGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             P++V+ AQRRGGKG+     ++EDFV  +F  STH   LFFS+LG V+ +KV++LP  
Sbjct: 542 AQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQA 601

Query: 610 SPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              A+GK ++N+LSL   ERIT ++P   F E +      +V   T  G V++  + ++ 
Sbjct: 602 GRGAKGKPIVNMLSLAPTERITAVLPVRDFTEGQ------FVCMVTSLGVVKKTPVMEYS 655

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +    G  A+ LD  D +++V     + + +L T+ G  VRFP + +R   GRN+ GVRG
Sbjct: 656 RPRSQGINAINLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAM-GRNARGVRG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL + D+VIS   V                                    DSS      
Sbjct: 715 ISLEENDRVISAQWV------------------------------------DSS------ 732

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q ILT +  G+GK T   ++R +NR GKG+ A   ++ N  G +V    
Sbjct: 733 -----------QVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERN--GDVVGALA 779

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V + D+++LVSD GTLIR+ VN IR   R  +GV + +  + E++  +  I +++  +E 
Sbjct: 780 VTERDELMLVSDHGTLIRIAVNSIRRTGRNAQGVRLINLGEGEQLAGLALIADTD-EEEG 838

Query: 907 ESTE 910
           E T+
Sbjct: 839 EQTD 842


>gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1]
 gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae]
 gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1]
          Length = 869

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/897 (43%), Positives = 561/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          ++++ + +DG   LSE Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020]
          Length = 928

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 569/933 (60%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640
            + +P  S  ARG+ L+N+L L+ GE ITT++P                        E+ 
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           S                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGLGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642]
          Length = 926

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/933 (43%), Positives = 572/933 (61%), Gaps = 104/933 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVV
Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + +++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------PEDESSWN 644
            + +P  S  ARG+ L+N+L L+ GE ITT++P                     D++  +
Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664

Query: 645 NL------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           +                   ++  +T +G V++  L  F +   SG IA++LD  D ++S
Sbjct: 665 SESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM        
Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                 I EE  Q        ILT SE+
Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  
Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V E+    R T+GV +   A DE++V +ER++E
Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/916 (43%), Positives = 573/916 (62%), Gaps = 72/916 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++D+  
Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDM-- 423

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           L+   S T G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 424 LVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQ 483

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I  
Sbjct: 484 EYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITP 543

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ 
Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654
           G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  AT  
Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRG++L +  QVI+M +   A A+                         T+
Sbjct: 720 PM-GRQARGVRGMNLEENQQVIAMLV---APAE-------------------------TA 750

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +   SV G+               +LT +E G+GKRT   ++    R  KG+ A   S+
Sbjct: 751 GEGAQSVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +
Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGL 853

Query: 895 ERIRESEIVDEAESTE 910
           +R+ ES+  + AES E
Sbjct: 854 QRVMESD-AEGAESVE 868


>gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1]
 gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1]
          Length = 921

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G R+V
Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY +K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636
           + +P  S  ARG+ L+N+L L +GERIT ++                             
Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELEEADDTVLEGEL 665

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                        PE  +     Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG           
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                 +RI  M                             I E   Q        ILT 
Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+   SR T+GV +   A DE +V +ERI+E
Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885


>gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
 gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
          Length = 867

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/901 (43%), Positives = 561/901 (62%), Gaps = 76/901 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLSNPDATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVREMLTRAESE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + +Y + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL +VK E    RR+RI     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGDELTTVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 IKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+
Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852

Query: 901 E 901
           E
Sbjct: 853 E 853


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/921 (43%), Positives = 570/921 (61%), Gaps = 88/921 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +M   WN+ +VK
Sbjct: 6   KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG+A+IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA RYTEC
Sbjct: 66  CARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K ++ LL D+ K+TVDF PNYDG  +EP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G + ++ N    +D L+E++  PDFPTG +I G +G+++ Y TGRG +V+R  
Sbjct: 186 NITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   + R  I+V E+PYQVNK A+LE+IAELVR+K++  I+DLRDESD+ G RVVI
Sbjct: 246 THFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F++ R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++S +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
              +++               Y I SDG   LS+ Q + IL++RL RLTGL +D I NE 
Sbjct: 426 RAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVNEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533
             +  +I + LDIL+  +R+  II  EL + K++        RR+ I     D+  ED I
Sbjct: 486 KDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLATEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+  +  +D+D++  LFI +TH  +L FS
Sbjct: 546 TPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646
           + G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P       FP+D       
Sbjct: 606 NRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDR------ 659

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           YV  AT  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ V
Sbjct: 660 YVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  + +R   GR + GVRG++L +  QVI++                            
Sbjct: 720 RFDENDVRPM-GRTARGVRGMNLEETQQVIALL--------------------------- 751

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                             ++E   Q +       LT +E GFGKRT   ++    R  KG
Sbjct: 752 ------------------VAENEQQSV-------LTATENGFGKRTPITEYTRHGRGTKG 786

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   S+ N  G +VA   V+  D+I+L++  G LIR  V+EIR   RAT+GV + +  
Sbjct: 787 MIAIQTSERN--GKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTLIAVE 844

Query: 887 KDERVVSVERIRESEIVDEAE 907
              ++  ++R+ ES++ D  E
Sbjct: 845 DGTKLSGLQRVVESDVEDAVE 865


>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
 gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
          Length = 837

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/891 (45%), Positives = 564/891 (63%), Gaps = 84/891 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR+
Sbjct: 9   SVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSARV 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R+++
Sbjct: 69  VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMEQ 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 129 LAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLSE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG VA+I+NP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    IE
Sbjct: 189 VIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQIE 248

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +   +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G RVVIELK+
Sbjct: 249 TQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELKK 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT + 
Sbjct: 309 DENPTILLNHLYKQTQMQSSFGIIMLAIVHNRPRVLTLRETIDFFIEHRKEIVTRRTIFD 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R                
Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMER---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LS++Q +AIL++RL RLTGL RD I  EL  +   I    +IL+S + 
Sbjct: 413 ----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAE 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++Y
Sbjct: 463 ILKIIVGELIELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARGK
Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGK 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L+L   E+IT I+P  E     ++ +++ AT++G V++  + ++      G IA+
Sbjct: 583 AIVNLLNLAANEKITAILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAV 639

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D+++SV     + D+LL T  G+ +RF    +R   GR S GVRG++L + D VI
Sbjct: 640 NLDEGDKLISVALTDGKQDVLLATANGKAIRFKEDDVRT-VGRVSRGVRGMAL-EDDVVI 697

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            MAI+                            E  T    DS+                
Sbjct: 698 GMAIL---------------------------NEHFT----DST---------------- 710

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L+
Sbjct: 711 ---IFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERN--GQVVDIKQVNDDNDLMLI 765

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D+G ++RV V+   I  R T+GV +    ++ERVV+V R+ E E  DE E
Sbjct: 766 TDQGKILRVQVSGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENE 816


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/914 (42%), Positives = 576/914 (63%), Gaps = 67/914 (7%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           I+   ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ 
Sbjct: 128 IVRPMDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELN 187

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD 
Sbjct: 188 NDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDN 247

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR PN+L+NG  GIAV
Sbjct: 248 AAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAV 307

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TG
Sbjct: 308 GMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTG 367

Query: 245 RGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RG +V+R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDES
Sbjct: 368 RGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDES 427

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           D+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+ 
Sbjct: 428 DKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLL 487

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW+
Sbjct: 488 HRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWD 547

Query: 424 ASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           +  ++D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL
Sbjct: 548 SGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGL 607

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++
Sbjct: 608 EQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELD 667

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  
Sbjct: 668 TEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDY 727

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +
Sbjct: 728 ILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----F 783

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VR
Sbjct: 784 VFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVR 843

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GVRG++L +G QVI+M +   A A+                    
Sbjct: 844 FDENDVRPM-GRQARGVRGMNLEEGQQVIAMLV---APAE-------------------- 879

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                T+ + + +V G+               +LT +E G+GKRT   ++    R  KG+
Sbjct: 880 -----TAGEGEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGM 919

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +
Sbjct: 920 IAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGE 977

Query: 888 DERVVSVERIRESE 901
             ++  ++R+ ES+
Sbjct: 978 GNKLSGLQRVVESD 991


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/910 (44%), Positives = 567/910 (62%), Gaps = 77/910 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF PNYDGS +EP VL AR PN+LVNG  GIAVGMATN+P HNL EV
Sbjct: 131 AQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           V  C+  ID P+  +D L+E+I  PDFPT  +I G  G++  Y TGRG +V+R  +H E 
Sbjct: 191 VAACLYAIDAPECTVDDLIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 MDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +VILN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV+ RRT + L
Sbjct: 311 EVPEVILNNLYKNTQLQDTFGINMVALVDGQPRLLNLRDLIFYFLRHRREVITRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KARDR HVL GLA+A+AN+DE + II+ +P P  A+ +L+ +SW++S +++++   +  
Sbjct: 371 RKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVREMLSRTELG 430

Query: 436 DSS-------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           DS                +  DG   LSEVQ + IL +RL RLTGL +D I NE   +  
Sbjct: 431 DSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYKEVID 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + LDILS   R+  IIK EL S+ +E    RR+ I     ++  ED I  +DMVVT+
Sbjct: 491 QIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLITPQDMVVTL 550

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+K  PL+ YRAQ+RGG+G+     +++D++  LF+ +TH ++L+FS+ G VY  K
Sbjct: 551 SHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFSNAGRVYWLK 610

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRN 660
           V+ +P GS  +RG+ +IN+  L +GE+IT ++P    EDE      YV  AT  G V+++
Sbjct: 611 VYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFEDEDK----YVFMATSLGTVKKS 666

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF +  + G IA+ LD  D ++        ND++L +  G+ VRF  + +R   GRN
Sbjct: 667 KLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDVRAM-GRN 725

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG++L +G +VI+M +                           ++E+         
Sbjct: 726 ARGVRGMNLEEGQRVIAMLV--------------------------AESEQ--------- 750

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 751 -----------------QSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTSERN--GK 791

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V+   VN  D+I+L++  G L+R  V+EIR   RAT+GV + S  +   +  ++RI ES
Sbjct: 792 VVSAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDEGTWLSGLQRIVES 851

Query: 901 EIVDEAESTE 910
           +  D  E+ E
Sbjct: 852 DAEDLGETDE 861


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/891 (44%), Positives = 561/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   +  V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 3   EEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG I++
Sbjct: 183 PPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G + +IV+TEIPY V KA ++EKIAELV  K+I  IADLRDESDR G ++
Sbjct: 243 RAKAEIEEHKG-KTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+  +DEV+ IIR S     A+  LM+R          
Sbjct: 362 RRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 414 ------------------LSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +K++  +PR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y++Q+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ ++QGE++T ++P    + S +  YV+  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQISQGEKVTAVIPL---KKSDDIKYVLMCTKKGIIKKTSIEEFKSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ LD  DE+++V+    E ++++ T  G  +RF    +R   GR + GV  ISL 
Sbjct: 633 NGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPM-GRVARGVMAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V H D +                                           
Sbjct: 692 EDDEVVEMDLV-HPDGE------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LTV+EKGFGKRT   ++RI  R+GKGI A  +SK  + G LV++  V   
Sbjct: 708 ---------VLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSK--KTGKLVSIRCVQPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V +I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/891 (44%), Positives = 561/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   +  V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 3   EEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG I++
Sbjct: 183 PPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G + +IV+TEIPY V KA ++EKIAELV  K+I  IADLRDESDR G ++
Sbjct: 243 RAKAEIEEHKG-KTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+  +DEV+ IIR S     A+  LM+R          
Sbjct: 362 RRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 414 ------------------LSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +K++  +PR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y++Q+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ ++QGE++T ++P    + S +  YV+  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQISQGEKVTAVIPL---KKSDDIKYVLMCTKKGIIKKTSIEEFKSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ LD  DE+++V+    E ++++ T  G  +RF    +R   GR + GV  ISL 
Sbjct: 633 NGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPM-GRVARGVMAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V H D +                                           
Sbjct: 692 EDDEVVEMDLV-HPDGE------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LTV+EKGFGKRT   ++RI  R+GKGI A  +SK  + G LV++  V   
Sbjct: 708 ---------VLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSK--KTGKLVSIRCVQPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V +I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807


>gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3]
 gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3]
          Length = 904

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/905 (46%), Positives = 570/905 (62%), Gaps = 37/905 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIIAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSM 422

Query: 431 IDLI-------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          DD    +G  +G   L+E+Q   ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL+SVK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELISVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     E DILL    G+ VRF    +R   GR + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A    DE          +    +GD   +    +D+SV 
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGSEDEN---EDDNGVEETAANGDA--VIDGADDASV- 772

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          Q+ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 773 ---------------QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDAS-- 873

Query: 903 VDEAE 907
           +DE E
Sbjct: 874 IDEDE 878


>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
 gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
          Length = 889

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/916 (43%), Positives = 572/916 (62%), Gaps = 72/916 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++D+  
Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDM-- 423

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           L+   S T G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 424 LVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQ 483

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I  
Sbjct: 484 EYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITP 543

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ 
Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654
           G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  AT  
Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRG++L +  QVI+M +   A A+                         T 
Sbjct: 720 PM-GRQARGVRGMNLEETQQVIAMLV---APAE-------------------------TE 750

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +   SV G+               +LT +E G+GKRT   ++    R  KG+ A   S+
Sbjct: 751 GEGAQSVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +
Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGL 853

Query: 895 ERIRESEIVDEAESTE 910
           +R+ ES+  + AES E
Sbjct: 854 QRVMESD-AEGAESIE 868


>gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          ++++ + +DG   LSE Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIPM-------------------------LVAGG------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          ++++ + +DG   LSE Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVRE---FLADKYVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
          Length = 864

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/907 (44%), Positives = 556/907 (61%), Gaps = 85/907 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K AH LL 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV++GC+ 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDR 263
            + NPD  ++ L+E+I  PDFPTG +I G +G++  Y TGRG +++R  +H E    G+R
Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + I+V  +PYQVNK  + EKIA+LV +KRI  I+D+RDESD+ G R+VIELKRG   +VI
Sbjct: 241 QAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVI 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P    L  I++ F+  R EVV RRT + L KAR+R
Sbjct: 301 LNNLYKNTQLQDTFGMNMVALVDGQPRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD------- 436
            HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++   DD       
Sbjct: 361 GHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPGGR 420

Query: 437 ---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                      + +  DG   LSEVQ + IL +RL RLTGL +D I  E   +   I + 
Sbjct: 421 AAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADL 480

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           LDIL+   R+  II  ELL++K E  T     RR+ I     +++ ED I   DMVVT+S
Sbjct: 481 LDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTLS 540

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K  PLS YRAQ+RGG+G+    M++ D+V  LFI +TH  +L FS  G VY  KV
Sbjct: 541 QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYWLKV 600

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660
           W +P GS  +RG+ ++N+  L   E+IT ++P   F ED       YV  AT  G V++ 
Sbjct: 601 WEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFSEDH------YVFMATSRGTVKKT 654

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF    ++G IA+ LD  D ++  +     +D++L +  G+ VRF  + +R   GR 
Sbjct: 655 PLSDFSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPM-GRT 713

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G  VI+M                         L++GD            
Sbjct: 714 ARGVRGMMLEEGQVVIAM-------------------------LVAGD------------ 736

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          + Q +LT +E GFGKRTS  ++    R  KG+ A   S  N  G 
Sbjct: 737 ---------------ETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTSARN--GK 779

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + S   +  +  V R+ ES
Sbjct: 780 VVGAVLVRPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDNSMLSGVRRVVES 839

Query: 901 EIVDEAE 907
           +  D+ E
Sbjct: 840 DADDDVE 846


>gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
 gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
          Length = 848

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/903 (43%), Positives = 576/903 (63%), Gaps = 69/903 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C+ ++ +PDID+  LM  I  PDFPT  +I G +GIK+ Y TGRG ++
Sbjct: 182 IPPHNISEVIDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   G+R  I++ E+PYQVNKA +L +I ELVR+KRI  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T +Q  F +NMVAL   +P    L  +L  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDYFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM R+W +S ++
Sbjct: 362 ITRRTVFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVE 421

Query: 429 DLI--DLIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++   +ID +++   +  T +        LS+ Q +AIL+LRL RLTGL ++ I +E  
Sbjct: 422 EMLRRAMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYK 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I++ L++L++  R+  II +EL ++K +   PRR+ +V    D+  ED I   DM
Sbjct: 482 EILDKIRDLLNMLANSERITAIIIEELTAIKGQFGDPRRSEVVIDAQDLSTEDLITPTDM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  Y+AQ+RGG+G+  +  R++DF+ +LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P GS  +RG+ + N++ L Q E+I  ++P    +S  +  YV  AT  G V+
Sbjct: 602 YWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPV---KSFDDTRYVFMATAGGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ V     ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L    +VIS                          L+  D+E +T     
Sbjct: 718 RNARGVRGMKLGAEQKVIS--------------------------LLVADSENMT----- 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LT +E G+GKRTS  ++   NR  +G+ A + +K N  
Sbjct: 747 ---------------------VLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRN-- 783

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA   V  ND+I+L++  G +IR  V+EIR   RAT+GV++ +    E++  +ERI 
Sbjct: 784 GKVVAAQLVEPNDEIMLITTGGVMIRTRVSEIREMGRATQGVILINLDAGEKLAGLERIV 843

Query: 899 ESE 901
           E++
Sbjct: 844 ETD 846


>gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1]
          Length = 919

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G R+V
Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY +K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636
           + +P  S  ARG+ L+N+L L +GERIT ++                             
Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELLDEADDTVLEGEL 665

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                        PE  +     Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG           
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                 +RI  M                             I E   Q        ILT 
Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+   SR T+GV +   A DE +V +ERI+E
Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885


>gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1]
 gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1]
          Length = 919

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G R+V
Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY +K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636
           + +P  S  ARG+ L+N+L L +GERIT ++                             
Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEADDTVLEGEL 665

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                        PE  +     Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG           
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                 +RI  M                             I E   Q        ILT 
Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+   SR T+GV +   A DE +V +ERI+E
Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885


>gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
 gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
          Length = 882

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/897 (43%), Positives = 560/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+
Sbjct: 191 VDACQHLLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM R+W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVREMLSRAETE 430

Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           + T G                 SDG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVV
Sbjct: 491 MAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYS 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ +INI  L +GE+IT ++P  E  +   + +V   T  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G  VI++                         L++GD            
Sbjct: 727 ARGVRGMQLEDGQNVIAL-------------------------LVAGD------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 793 VVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849


>gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3]
 gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3]
          Length = 871

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/915 (43%), Positives = 567/915 (61%), Gaps = 81/915 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP++L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACHHLLANPQASIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  ++V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLECFLAHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+D+ + +I+ +P P  AR+ELM RSW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVREMLARAEAE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LSE Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL +VK E    RR+RI     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTIIGEELTAVKSEFGDARRSRIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMGTSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899
           +VA   V    +I+L++  G LIR  V+EIR   RAT+GV + S  +  R+  +++I E 
Sbjct: 793 VVAATLVEPESEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTRLSGLQQIAEA 852

Query: 900 ---SEI-VDEAESTE 910
              SEI  D+A  +E
Sbjct: 853 DADSEIDADDASESE 867


>gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12]
 gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12]
          Length = 905

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/898 (44%), Positives = 567/898 (63%), Gaps = 59/898 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P V+  R P +L+NG  GIAVGMATNIP HN+
Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPHNM 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R  + 
Sbjct: 188 TEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRSKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           ++     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+VIE+K
Sbjct: 248 VQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +++ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMIECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++   
Sbjct: 368 ELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  DG  YL++ Q +AIL+LRL +LTGL  + I  E   L   I  
Sbjct: 428 DDAARPEWLEPEYGI-RDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDIIAA 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RLL +IK+EL  + +     RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL+ Y+AQRRGGKG+S   ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARG+ ++N+L L++GE IT I+P  E     ++ Y++ AT HG V++  L  + 
Sbjct: 607 PLASRQARGRPIVNLLPLSEGEHITAILPVRE---YADDKYIIMATSHGTVKKTALKAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +G IA+ L   DE++ V+    +NDI+L +  G+ VRF           N + VR 
Sbjct: 664 NPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRF-----------NEM-VRD 711

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVE 782
                     S   ++  D + +E +  ++ M      + G    D +++ SL       
Sbjct: 712 ----------SETGLVKLDPETNEELVALRPMGRTATGVRGIRLEDGQKVVSL------- 754

Query: 783 GNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                     +  KE   ILTV+E G+GKRTS  ++   +R+ KG+ +  VS+ N  GA+
Sbjct: 755 ----------IVPKENGAILTVTENGYGKRTSLEEYPAKSRATKGVVSIKVSERN--GAV 802

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V    V +ND+I+L+SD+GTL+R P   +    R T+GV I    + E+VV ++RI E
Sbjct: 803 VGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRIVEGEKVVGLQRIDE 860


>gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
 gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
          Length = 895

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/915 (44%), Positives = 574/915 (62%), Gaps = 82/915 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF PNYDG+ Q PVV+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252
           NL EVV GC+A+ID+PD+ +D LME I GPDFPT  +I GR GI  AY TGRG + IR  
Sbjct: 186 NLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRVYIRAR 245

Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             V H  KT   R+ +++TE+PYQ+NK+ ++EKIAELV+EKR+  I +LRDES+++G RV
Sbjct: 246 HEVEHDAKTK--RDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG + DVI+N L++ T L+++F +NMVAL   +P    L  +L AF+  R EVV 
Sbjct: 304 VIELRRGENPDVIINNLFKQTQLETVFGINMVALIDGEPRILNLKEMLDAFIRHRREVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+R H+L GLA+A+AN+DE++ +I+ SP+   A+ +L+ + W + D+  +
Sbjct: 364 RRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMAM 423

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         DD     G  +G  +LS  Q +AIL+LRL RLTGL  + ++NE   +  
Sbjct: 424 LERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREILE 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I + LDIL +  RL+ +I+ EL ++ +E    RRT I     D+   D I  E++VVT+
Sbjct: 484 RIADLLDILGNPERLMQVIRDELQAIVEEFGDERRTEITSSRRDLTVADLIDEEELVVTI 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  +
Sbjct: 544 SHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWLR 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
           V+ +P  S  +RG+ ++NIL L++GERITT +P   +PED+      +V+ AT  G V++
Sbjct: 604 VFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQ------FVLMATSAGVVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L +F +   SG IA+ LD  D ++         +I+L +  G+ VRF   A+R  + R
Sbjct: 658 TPLPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMS-R 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI +A+G  V+S+ I                                     D 
Sbjct: 717 TARGVRGIRMAEGHHVVSLII-----------------------------------PQDD 741

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V                  +L  SE G+GKRT+  +F    R  +G+ A   S  N  G
Sbjct: 742 AV------------------LLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRN--G 781

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIR 898
            LV    + D D+++L+SDKGTL+R   +E+ + SR T+GV +I  + +DER+V VERI 
Sbjct: 782 NLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIA 841

Query: 899 ES---EIVDEAESTE 910
           E+   EI+ E    E
Sbjct: 842 ETDAEEIIGEDTEVE 856


>gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48]
 gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas
           entomophila L48]
          Length = 920

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAGLINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G R+V
Sbjct: 246 SEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINIVALIDGRPRLLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  +G  YLS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + ILSS  RL+ +I++EL +++ E    RRT I++   D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILDARHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY  K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWLKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE------------- 640
           + +P  S  ARG+ L+N+L L +GERIT ++            PE+E             
Sbjct: 606 YDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEELEDGDDGVIEGEL 665

Query: 641 -------------SSW----NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                          W       Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GR + GVRG+ L KG ++ISM     
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQRIISML---- 780

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I E   Q        ILT 
Sbjct: 781 -----------------------------------------IPESGAQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L     V + ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLTGAIQVQEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE +V VER++E
Sbjct: 850 RTRVGEVSSLGRNTQGVTLIKLAADETLVGVERVQE 885


>gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
          Length = 830

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/884 (43%), Positives = 567/884 (64%), Gaps = 89/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I  EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++GV  +K + K A
Sbjct: 8   IVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPHKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R LL++G GNFGSVDGD  AA RYTE RL
Sbjct: 68  RIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  ++ D+ K+TVD+RPN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V +ID+ + +++  ME I+GPDFPTG +ILG  GIK+AY TGRG I +R  + 
Sbjct: 188 GEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGTEGIKDAYTTGRGKIKVRAKAS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  R+ I+V EIPYQVNKA ++EKIAELVR+K+I  I+DLRDESDR+G R+VIELK
Sbjct: 248 IEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+LY++T L+  F V M+A+   +P+   L  +L  ++  +++++VRRTK+
Sbjct: 308 RDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQPKVLNLKEVLTHYLNHQKDIIVRRTKF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA DRAH+L GL IA+ NLDEV+++IR S N + A+  LM++               
Sbjct: 368 DLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEK--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL +LTGL  + +  E   L   I    +IL++  
Sbjct: 413 -----------FSLSEKQAQAILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANER 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL IIK+ELL ++++    RRT I    G ++M D   +  ED+V+T++H GY+KR+P+
Sbjct: 462 LLLDIIKEELLEIREKYADKRRTEIAIDPGSINMID--LVDEEDVVITLTHFGYIKRLPI 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGGKG SGV  RDEDFV  L I STH+ +LFF++LG VYK  V+ +P G  QA
Sbjct: 520 DTYRSQKRGGKGISGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQA 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G A++N+L L+  E+I  ++P   D    N  Y+V AT+ G +++ +L  F    ++G 
Sbjct: 580 KGTAIVNLLQLSANEKIAAVIPVDRD---CNEQYLVMATQKGIIKKTELCQFDNTRKTGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ +   DE++SV    +E +I + T  G  +RF    +R   GR ++GV+GI+LA+ D
Sbjct: 637 MAINIREDDELISVRLINKEQEIFMITSQGMSIRFKEDNVRDM-GRTAMGVKGINLAEKD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++M  VL  + D                                              
Sbjct: 696 YVVAME-VLEDNKD---------------------------------------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L VSE G GKRT   ++R+  R GKGI+   VSK  + G L+    V D+D+I
Sbjct: 709 ------LLVVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSK--KTGNLIGAKIVEDHDEI 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L++++G +IR+ V  I    RAT+GV + +T  ++ +VS+ +I
Sbjct: 761 LLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSIVSIAQI 804


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 572/905 (63%), Gaps = 67/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL D+ K+TV+F PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW++  +++++ 
Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVREMLS 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I  +D
Sbjct: 486 REVMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G 
Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  AT  G 
Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSKGT 661

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R  
Sbjct: 662 VKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPM 721

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVRG++L +G QVI+M +   A A+                         T+ +
Sbjct: 722 -GRQARGVRGMNLEEGQQVIAMLV---APAE-------------------------TAGE 752

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + +V G+               +LT +E G+GKRT   ++    R  KG+ A   S+ N
Sbjct: 753 GEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  ++R
Sbjct: 798 --GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQR 855

Query: 897 IRESE 901
           + ES+
Sbjct: 856 VVESD 860


>gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+R GLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          ++++ + +DG   LSE Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFSA---DKYVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN]
 gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN]
          Length = 878

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/897 (43%), Positives = 558/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+
Sbjct: 191 VDACQHLLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETE 430

Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           + T G                 SDG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVV
Sbjct: 491 MAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYS 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ +INI  L +GE+IT ++P  E  +   + +V   T  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G  VI++                         L++GD            
Sbjct: 727 ARGVRGMQLEDGQNVIAL-------------------------LVAGD------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 793 VVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849


>gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 900

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/919 (43%), Positives = 574/919 (62%), Gaps = 62/919 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLRKIAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+  C+ V+ NP+  +D L+EII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLDEVISACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+DE + II+ + NP  A++ELM ++W++S ++
Sbjct: 362 VTRRTIFELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               Y + + G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528
            NE   +  EI + LD+L+   R+  +I+ EL  V+ E      DT RR+ I     ++ 
Sbjct: 482 VNEYKEVMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFIEMNATELF 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +DMVVT+S+ GY+K  PLS YRAQ+RGG+G+     ++ED++  LF+ +TH  
Sbjct: 542 TEDLITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDI 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS  G +Y  KVW +P GS  +RGK ++N+  L +GE+IT I+P    +   ++ YV
Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPI---KGYQDDHYV 658

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++ +LSDF    ++G IA+ L+  D ++       ++D++L +  G+ VRF
Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L  G QVI+M             +      +        D
Sbjct: 719 DENDVRPM-GRTARGVRGMNLGDGHQVIAM-------------LVAPAEAAEGAEAAVVD 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                   N +++  ++               LT +E G+GKRT   ++    R  KG+ 
Sbjct: 765 A-------NGAAIPSSV---------------LTATENGYGKRTPIAEYTRHGRGTKGMI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   ++ N  G +VA   V+  DQI+L++  G L+R  V+EIR   RAT+GV + +  + 
Sbjct: 803 AIQTTERN--GKVVAAALVSPEDQIMLITTGGILVRTRVSEIREMGRATQGVTLINVDEG 860

Query: 889 ERVVSVERIRESEIVDEAE 907
            R+  ++RI ES+  DE +
Sbjct: 861 TRLSGLQRIAESDSDDETD 879


>gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440]
 gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440]
          Length = 923

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G R+V
Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++ ++
Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425

Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +         +D     G  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  +
Sbjct: 426 ERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VVT+S
Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY +K 
Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636
           + +P  S  ARG+ L+N+L L +GERIT ++                             
Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLEGEL 665

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                        PE  +     Y+  AT  G V++  L  F +   +G IA+KL   D 
Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG           
Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                 +RI  M                             I E   Q        ILT 
Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+GTL+
Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+   SR T+GV +   A DE +V +ERI+E
Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885


>gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+  YL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          ++++ + +DG   LSE Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGVIAIQTSERN--GR 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
          Length = 904

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/905 (45%), Positives = 570/905 (62%), Gaps = 35/905 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNPDID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422

Query: 431 IDLI-------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  +G   L+E+Q   ILE+RL RLTGL +D + +E   L  
Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL++VK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     E DILL    G+ VRF    +R   GR + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A    DE              I+ + + +    +D+SV 
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGIEDE-----NEDDNGVEEIAANGDAVIDGADDASV- 772

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          Q+ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 773 ---------------QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAE 907
            DE E
Sbjct: 876 EDEDE 880


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/905 (43%), Positives = 557/905 (61%), Gaps = 84/905 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+  + NP+  +D L+E+I  PDFPTG +I G +G++  Y TGRG +V+R  +H E 
Sbjct: 191 VDGCLYCLRNPECSVDELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVVMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IVV  IPYQVNK  + E+IAELV EK+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +VILN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EVV RRT + L
Sbjct: 311 EVPEVILNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIHYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM R+W++S +++++   D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVREMLSRADLD 430

Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                          S+ +  DG   LS+ Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 AVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDVMA 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II +EL ++K E  T     RR+ I     +++ ED I   DM
Sbjct: 491 TIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDTEDLITPTDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +L FS  G V
Sbjct: 551 VVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLCFSDRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y  KVW +P G+  +RG+ ++N+  L  GE+IT ++P   F ED       YV  AT  G
Sbjct: 611 YWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDN------YVFMATSRG 664

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R 
Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRG++L  G  VI++                         L++GD       
Sbjct: 725 M-GRNARGVRGMTLEDGQSVIAL-------------------------LVAGD------- 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + Q +LT +E G+GKRTS  ++    R  KG+ A   S  
Sbjct: 752 --------------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSR 791

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + S      +  V 
Sbjct: 792 N--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGSSLSGVR 849

Query: 896 RIRES 900
           R+ ES
Sbjct: 850 RVVES 854


>gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 899

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/927 (44%), Positives = 578/927 (62%), Gaps = 100/927 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +H LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+GC+A+I NPD+ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  + 
Sbjct: 188 TEVVNGCLALIQNPDLTILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARAD 247

Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE  + +G RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 248 IETDEKTG-RETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 307 IKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L  R W   +++ +++ 
Sbjct: 367 VFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLEK 426

Query: 434 IDDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             + +          +G  DG  Y+SE Q +AIL+LRL +LTGL  + I  E  +L   I
Sbjct: 427 AGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLELI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL++  RL+ +I+ EL+ +K++    RRT I     D+  ED I  E++VVT+SH
Sbjct: 487 AELLYILATPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLITEENVVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 547 EGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L   ERIT I+P   + ED+      Y+  AT  G V++  
Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDK------YIFMATAFGTVKKTP 660

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L+ + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF             
Sbjct: 661 LTAYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETTVVDENG 720

Query: 709 -PI------SAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            P+        IR       GR + GVRGI +A   +V+S+ +                 
Sbjct: 721 NPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRVVSLIVP---------------- 764

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                             K D ++                   LTV+E G+GKRT   D+
Sbjct: 765 ------------------KTDGAI-------------------LTVTENGYGKRTQLEDY 787

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T
Sbjct: 788 PSKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNT 845

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVD 904
           +GV++  T  +E+VV ++RI E E+ +
Sbjct: 846 QGVILIRTIDEEQVVGLQRIEEIEVTE 872


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/907 (43%), Positives = 575/907 (63%), Gaps = 71/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM R+W++  +++++ 
Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLS 425

Query: 433 LIDDSSYTIG----------------SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
             +  S T+G                 +G +Y LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAE--SDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQ 483

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I  
Sbjct: 484 EYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITP 543

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ 
Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654
           G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  AT  
Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRG++L +G QVI+M +   A A+                         T+
Sbjct: 720 PM-GRQARGVRGMNLEEGQQVIAMLV---APAE-------------------------TA 750

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + + +V G+               +LT +E G+GKRT   ++    R  KG+ A   S+
Sbjct: 751 GEGEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  +
Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGL 853

Query: 895 ERIRESE 901
           +R+ ES+
Sbjct: 854 QRVVESD 860


>gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
 gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
          Length = 859

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/914 (44%), Positives = 577/914 (63%), Gaps = 81/914 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF  NYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252
           NL E+V+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQGIINGRAGIVEAYRTGRGRIYIRAR 245

Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + H +KT  +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G RV
Sbjct: 246 HEIEHDKKT--NRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG + DV++N L+ +T LQ++F +NMVAL   +P+   L  +L AFV  R EVV 
Sbjct: 304 VIELRRGENPDVVINNLFAHTQLQTVFGINMVALINGEPKILNLKEMLDAFVRHRREVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP    A+ +LM + W   D+  +
Sbjct: 364 RRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLAM 423

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         DD     G  +G  +LS  Q +AIL+LRL RLTGL  + ++NE   +  
Sbjct: 424 LERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDILE 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + L+IL    RL+ +I++EL +V  E    R T I     D+   D I  ED+VVT+
Sbjct: 484 KIADLLEILGDPDRLMQVIREELEAVVSEFGDNRLTEITSSKRDLTIADLIDEEDLVVTI 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  +
Sbjct: 544 SHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWLR 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
           V+ +P  S  +RG+ ++NIL L +GERITT +P   +PED+      YV+ AT  G V++
Sbjct: 604 VFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDYPEDQ------YVLMATSAGVVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L +F +   +G IA+ LD  D ++       + +++L +  G+ VRF   A+R  + R
Sbjct: 658 TPLPNFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMS-R 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI + +G  V+S+ I+   DA                                 
Sbjct: 717 TARGVRGIRMPEGHHVVSL-IIPQEDA--------------------------------- 742

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +LT SE G+GKRT+  +F   +R  +G+ A   S+ N  G
Sbjct: 743 -------------------VLLTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERN--G 781

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIR 898
            LV    + + D+++L+SDKGTL+R   +E+ + SR T+GV +I  + +DER+V VERI 
Sbjct: 782 NLVTALQLFEGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIA 841

Query: 899 ES--EIVDEAESTE 910
           E+  E VD  E ++
Sbjct: 842 ETDAEEVDGEEGSD 855


>gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
 gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
          Length = 855

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/905 (44%), Positives = 570/905 (62%), Gaps = 81/905 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   +N+ Y K ARI 
Sbjct: 11  VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H +L D+ K+TVDF PNYDGS  EP+++  R PN+L+NG  GIAVGMATN P HNL EV
Sbjct: 131 SHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNFPPHNLTEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++G +A++  P+  +D LME I GPDFPT  +I G +G+++ Y TGRG +V+RG +H+E 
Sbjct: 191 INGLLALLQKPETSIDELMEFIPGPDFPTSGIIHGISGVRDGYRTGRGRVVMRGKTHVES 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+RE I+V E+PYQVNK   +EKIAELV +K+I  I+DLRDESD+ G RVVIELK+G
Sbjct: 251 LERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMRVVIELKKG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +VILN LY+ T LQ  F +NMVAL   +P    L  IL AF+  R EV+ RRT Y L
Sbjct: 311 EIPEVILNNLYKQTQLQDNFGMNMVALIDGQPRLLNLREILDAFLKHRREVITRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R H+L GLA+A+AN+DE+++II+ +P P  A++ELM+RSW ASD+  +  ++  S
Sbjct: 371 KKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSW-ASDV--VSSMLKKS 427

Query: 438 S------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           S            Y +  DG   LS+ Q + IL+LRL RLTGL ++ I  E +++ + I 
Sbjct: 428 SQDLSKPDGLSVLYGLKEDG-YRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIMVTII 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + LDIL+   R+  II +EL  ++ +    RR+ IV    D+  ED I  +DMVVT+S+ 
Sbjct: 487 DLLDILNKSERVTSIISEELTEIRSQYGDDRRSEIVTDAYDLSIEDLIAPQDMVVTLSNS 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K   L  YRAQ+RGG+G+  +  +++DF+  +F+ ++H ++L FSS G VY  KV+ 
Sbjct: 547 GYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQVYWLKVYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662
           +P GS  +RGK ++N+  L  GE+I  I+    F +DE      Y+  AT  G V++  L
Sbjct: 607 VPQGSRISRGKPIVNLFPLMPGEKINAILAVKDFVDDE------YIFMATAKGTVKKTPL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF    +SG IA+KL + D ++       E DI+L +  G+ V F    +R   GRN+ 
Sbjct: 661 SDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSM-GRNAA 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L   +QV+S+                         LI+   EE           
Sbjct: 720 GVRGMKLPDTEQVLSL-------------------------LIASSNEE----------- 743

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L  +E G+GKRT   +FR S R  +G++A  VS  N  G +V
Sbjct: 744 ----------------SVLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVSDRN--GIVV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V D+D+I+L++  G LIR  V+EIR   RAT+GV + + +  E++  +E+I ES+ 
Sbjct: 786 AAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDGEKLSGIEKIVESDH 845

Query: 903 VDEAE 907
           +D+ +
Sbjct: 846 IDDGQ 850


>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 812

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/892 (43%), Positives = 569/892 (63%), Gaps = 83/892 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  + I+ EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M++ G+  +K 
Sbjct: 2   ENKSKIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++++Y A+ +MAQD++ R LL++GQGNFG+VDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL D+ K+TVDF PN+D S QEP+VL A+YPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEARMSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V  IDN D   + LME I GPDFPTGA+I+G  GIK AY TGRG + +
Sbjct: 182 PPHNLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGRGKVRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIV+TEIP+QVNK+ ++E+IA+LVR+K++  I+DLRDE++R G RV
Sbjct: 242 RARAEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A++ILN LY+++ L+  FS+  +A+    P+   L   L+ +V  +++V+ 
Sbjct: 302 VIELKRDVNANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKDVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA+ RAH+L GL IA+ N+D V+ IIR S N + A+ +L++           
Sbjct: 362 RRTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q +AIL++RL RLTGL RD I NE   L   I     I
Sbjct: 412 ----------------FALSDIQAQAILDMRLQRLTGLERDKIDNEYKELMERITYLESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  ++L G+IK E+L++KD+   PRRT I     ++  +D    E++ +T++HLGY+KR
Sbjct: 456 LADENKLFGVIKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFVTDL   +TH+ +LFF++ G VYK   + +P G 
Sbjct: 516 LPADTYKSQKRGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669
             ++G A++N+L LN GE+I   + F  D     +L Y++FATK G V++  +SDF  IN
Sbjct: 576 RTSKGTAIVNLLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNIN 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SG IA+ L   DE++ V     E DI+L T+ G  +RF  + +R   GR + GV+GI+L
Sbjct: 636 KSGLIAINLKDGDELIGVNRTNGEEDIILVTENGMSIRFNENDVRSM-GRTATGVKGITL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +KGD V+SM                         LIS  T+                   
Sbjct: 695 SKGDHVVSMD------------------------LISNGTD------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L VSEKGFGKRT + ++R   R+GKGI+  +++  ++ G LV    V++
Sbjct: 712 ----------LLVVSEKGFGKRTETEEYRPQIRAGKGIKTYNIN--SKTGKLVGATLVDE 759

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +D++++++  G LIR+ VNEI I  R T GV +  T ++  VVS+ +++  E
Sbjct: 760 DDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDEEVEVVSIAKLKGEE 811


>gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ]
 gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ]
          Length = 910

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/952 (42%), Positives = 571/952 (59%), Gaps = 113/952 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A+ID+P++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + IE     G R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G RVV
Sbjct: 246 AEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EVV R
Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQPRLLNLKDMLEVFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVEAMV 425

Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +     +         Y +  DG  YLS  Q +AIL+LRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADACRPEELGPQYGL-RDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILG 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL+S  RLL +I++EL  +K E    RRT IV   +D+   D I  E+ VVT+
Sbjct: 485 QIGELIRILTSPERLLEVIREELEKIKAEFGDARRTEIVASQVDLTIADLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGGKG++   ++DED+V  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE------------ 640
            + +P  S  +RG+ L+N+L L++GE IT ++             +DE            
Sbjct: 605 TYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDEAEGALLEGE 664

Query: 641 ------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                             +     Y+  AT  G V++  L  F +  ++G IA+ L   D
Sbjct: 665 VVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGLIALDLVEGD 724

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++  T     +++L +  G+ +RF    +R   GRN+ GVRG+ L KG ++ISM    
Sbjct: 725 TLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTM-GRNARGVRGMKLGKGQRLISML--- 780

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                     I E   Q        ILT
Sbjct: 781 ------------------------------------------IPESGAQ--------ILT 790

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            SE+G+GKRT    F    R G+G+ A   ++ N  GAL+    V + ++I+L+SD+GTL
Sbjct: 791 ASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIGAVQVREGEEIMLISDQGTL 848

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-----EIVDEAEST 909
           +R  V+E+    R T+GV++   A+DE +V +ER++E      E+ D+ E+T
Sbjct: 849 VRTRVDEVSSLGRNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDEETT 900


>gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
 gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
          Length = 906

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/918 (43%), Positives = 567/918 (61%), Gaps = 93/918 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK Y K A
Sbjct: 8   VSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P V+  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 DKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A+I+NPD+ +D L+E I GPDFPT  +I GR GI + Y TGRG + IR  + 
Sbjct: 188 GEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGIINGRKGIIDGYKTGRGKLKIRAKAR 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V E+PYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRMVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   +VILN LY  T +QS F +NMVAL+  +P+   L  +L AF+  R EVV RRT 
Sbjct: 308 KRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQPKLLNLKEMLHAFILHRREVVTRRTV 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL- 433
           + L KAR RAH+L GLAI++AN++ ++ +IR S  P  A+  L  + W   ++  +++  
Sbjct: 368 FELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAAMLEAS 427

Query: 434 ------IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  D  +   G  D   ++++ Q +AIL++RL +LTGL  + I NE   L   I  
Sbjct: 428 GVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELIEIITA 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL +  RL+ +I +EL  V+      RRT I     D+  ED I  ED+VVT+SH G
Sbjct: 488 LLFILENPHRLMEVITEELNDVRANFADARRTEITASETDLCMEDLITEEDVVVTLSHEG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + STH ++L FS+ G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTRGRLYWLKVFQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARG+ +INIL L QGERIT I+P     +  ++ +V  AT +G V++  LS + 
Sbjct: 608 PLASRQARGRPIINILPLEQGERITAILPV---RTYDDDKFVFMATANGTVKKTALSAYS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------PI-- 710
           +   SG IA+ L+  +E++       EN+I++ +  G+ VRF              P+  
Sbjct: 665 RPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVDEQGNPVLD 724

Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRGI L +G++ +S+ +                     
Sbjct: 725 ENGVQEIKFKGVRPM-GRTATGVRGIKLKEGEKAVSLIV--------------------- 762

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                             +  G+I               LT +E G+GKRT   D+   +
Sbjct: 763 -----------------PNATGHI---------------LTCTENGYGKRTPLSDYASKS 790

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ +G+ +  VS+ N  G +V    V++ND+I+L+S++GTL+R PV+ + I  R T+GV 
Sbjct: 791 RATQGVISIKVSERN--GKVVGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRNTQGVT 848

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T  DE++V+++RI E
Sbjct: 849 LIRTRDDEKIVALQRIEE 866


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/923 (43%), Positives = 569/923 (61%), Gaps = 89/923 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+ +VK
Sbjct: 6   KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD  AA RYTEC
Sbjct: 66  CARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL DL K+TVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+DG + V+ N D  +D L+EII  PDFPTG +I G +G+++ Y TGRG +V+R  
Sbjct: 186 NITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   + R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A+ +LM R+W++S +++++ 
Sbjct: 366 TIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
              +                 Y I +DG   LS+ Q + IL++RL RLTGL +D I NE 
Sbjct: 426 RTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533
             +  +I + LDIL+   R+  II  EL   K+E        RR+ I     D+  ED I
Sbjct: 486 KEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIELNATDLGTEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+  +  +D+D++  LFI +TH  +L FS
Sbjct: 546 TPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646
           + G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P       FPED       
Sbjct: 606 NRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDH------ 659

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+  AT  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ V
Sbjct: 660 YIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAV 719

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  + +R   GR + GVRG++L +G QVI++                            
Sbjct: 720 RFDENDVRPM-GRTARGVRGMNLEEGQQVIALL--------------------------- 751

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                             ++E   Q +       LT +E GFGKRT   ++    R  KG
Sbjct: 752 ------------------VAENEQQSV-------LTATENGFGKRTPITEYTRHGRGTKG 786

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   S+ N  G +VA   V+ +D+I+L++  G LIR  V EIR   RAT+GV + +  
Sbjct: 787 MIAIQTSERN--GKVVAATLVDASDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVE 844

Query: 887 KDERVVSVERIRESEI-VDEAES 908
              ++  ++RI ES++ VD+ +S
Sbjct: 845 DGTKLSGLQRILESDVEVDDDQS 867


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/905 (43%), Positives = 557/905 (61%), Gaps = 84/905 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+  + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG +++R  +H E 
Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++  +D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGD 430

Query: 438 S---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +               Y +  DG   LSE Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 AAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMA 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II +EL ++K E  T     RR  I     +++ ED I   DM
Sbjct: 491 TIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +L FS+ G V
Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y  KVW +P G+  +RGK ++N+  L  GE++T ++P   F ED       YV  AT  G
Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDH------YVFMATSRG 664

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R 
Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRG+ L +G  VI++                         L++GD       
Sbjct: 725 M-GRNARGVRGMMLEEGQTVIAL-------------------------LVAGD------- 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + Q +LT +E G+GKRT   ++    R  KG+ A   S  
Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V    V  +D+I+L++  G L+R  V EIR   RAT+GV + S      +  V 
Sbjct: 792 N--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVR 849

Query: 896 RIRES 900
           R+ ES
Sbjct: 850 RVVES 854


>gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
 gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
          Length = 893

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/892 (45%), Positives = 554/892 (62%), Gaps = 70/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G +WNK Y K A
Sbjct: 8   IVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL+DL KDTVDF PNYD + Q P VL  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 TKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A+I+NP+I +D LME I GPDFPT A+I GR GI  AY TGRG I +R  + 
Sbjct: 188 TEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAIINGRAGIIQAYRTGRGRIYVRAKAD 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE I++TEIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G RVVIE+
Sbjct: 248 IEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR    +V+LN L+  T LQS+F +N+VAL   +P+   L  ++  F+  R EVV RRT 
Sbjct: 308 KRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQPKILNLQQLIHHFLRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+RAH L G AIA+ N+DE++ +I+ SP+   AR  L+ R WN   +  ++D  
Sbjct: 368 YLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQMLDRA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     +  Y +  DG  +LS  Q + ILELRL RLTG+  D I  E      EI 
Sbjct: 428 GAQATRPEWLEDHYGL-RDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKLEEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E  DIL   +RL+ +I++EL +V +E    RRT I+E L D+  ED I  ED VVT+S+ 
Sbjct: 487 EYQDILGDLTRLMTVIREELEAVVEEFGDERRTEIIESLHDLTIEDLITEEDRVVTISNG 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGG G+S   ++DEDFV  L + STH ++L F++LG VY  KV++
Sbjct: 547 GYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFTNLGKVYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+    +RG+ +IN+L L +GERI++I+P  E  +   + +V+ AT +G V++  L  +
Sbjct: 607 IPVAGRNSRGRPVINLLPLGEGERISSILPVEEYSA---DKFVIMATANGTVKKTSLEQY 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +    G  A+ L   D ++       ++D++L +  G+ VRF  +  R   GR S GVR
Sbjct: 664 SRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSM-GRVSKGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L +G +VISM                                              +
Sbjct: 723 GMRLPEGHEVISMV---------------------------------------------V 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            EE        + F+LTV E G+GKRT   +F    R GKG+ A   S+ N  G LV   
Sbjct: 738 PEE--------DGFLLTVCENGYGKRTKVDEFPTKGRGGKGMIAIQASERN--GPLVGAT 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +   D+I+L+SD+GT++R   +E+ +  R T+GV I      E +V + RI
Sbjct: 788 QLFAGDEIMLISDQGTMVRTRGDEVSVVGRNTQGVRIIRLKDSENLVRLARI 839


>gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99]
 gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99]
          Length = 907

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/913 (44%), Positives = 561/913 (61%), Gaps = 89/913 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +S+R  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYDG+   P V+  R P +L+NG  GIAVGMATNIP HN+
Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI  AY TGRG  ++R  + 
Sbjct: 188 TEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIEAYKTGRGRAIMRSKAD 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           ++     RE+I+V E+PYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+VIE+K
Sbjct: 248 VQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIEIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT +
Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L  LAIA+AN+D ++ +I+ S  P  A+ +L+ + W    +K +++   
Sbjct: 368 ELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAMLEKAG 427

Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           D +         Y I  D   YL+E Q +AIL+LRL +LTGL  + I  E   L   I  
Sbjct: 428 DDAARPEWLEPEYGI-RDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEIIAA 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RLL +IK+EL  + +     RRT I    +DM  ED I  ED+VVT+SHLG
Sbjct: 487 LLYILHSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL+ Y+AQRRGGKG+    ++DEDFV  L + +TH ++L FS  G +Y  KV++L
Sbjct: 547 YAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARG+ ++N+L L++GE IT I+P        ++ YV+ AT HG V++  L  + 
Sbjct: 607 PLASRQARGRPIVNLLPLSEGEHITAILPV---RDYADDKYVIMATSHGTVKKTALKAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------------ 708
               +G IA+ L   D+++ V+    ++DI+L +  G+ VRF                  
Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAET 723

Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              + A+R   GR + GVRGI L  G +V+S+ IV  AD                     
Sbjct: 724 NEELVALRPM-GRTATGVRGIRLEDGQKVVSL-IVPKADG-------------------- 761

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            ILT++E G+GKRT+  ++   +R+ KG
Sbjct: 762 --------------------------------AILTITENGYGKRTALDEYPAKSRATKG 789

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + +  VS+ N  GA+V    V +ND+I+L+SD+GTL+R P   +    R T+GV I  TA
Sbjct: 790 VVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRTA 847

Query: 887 KDERVVSVERIRE 899
           + E+VV ++RI E
Sbjct: 848 EGEKVVGLQRIDE 860


>gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/910 (43%), Positives = 563/910 (61%), Gaps = 76/910 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+ YVK
Sbjct: 6   KETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPYVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGSVDGD  AA RYTEC
Sbjct: 66  CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A+ +L D+ KDTVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+DG + V+ N D  +D L+EII  PDFPT  +I G +G+++ Y TGRG IV+R  
Sbjct: 186 NITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGRIVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   + R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EVV RR
Sbjct: 306 ELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLQCFLSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L +AR+R HVL GLA+A+AN+D+ + II+ +P P  A+ ELM R+W++S +++++ 
Sbjct: 366 TIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVREMLV 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
              + +               Y I  DG   LS+ Q + IL++RL RLTGL +D I NE 
Sbjct: 426 RTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533
             +  +I + LDILS   R+  II  EL + K E        RR+ I     D+  ED I
Sbjct: 486 KEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERRSYIEHNATDLGTEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YR+Q+RGG+G+  +  +D+D++  LFI +TH  +L FS
Sbjct: 546 TPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFAT 652
           + G +Y  KVW +P GS  +RGK ++N+  L  GE++T I+P   D  S+  + Y+  +T
Sbjct: 606 NRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSFPEDRYIFMST 665

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + 
Sbjct: 666 SLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAVRFDEND 725

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRG++L +G QVI+                          L+  + E+ 
Sbjct: 726 VRPM-GRTARGVRGMNLEEGQQVIA--------------------------LLVAENEQ- 757

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                    Q +LT +E G+GKRT   ++    R  KG+ A   
Sbjct: 758 -------------------------QSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V  +D+I+L++  G LIR  V EIR   RAT+GV + +     ++ 
Sbjct: 793 SERN--GRVVAATLVEPSDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDGTKLS 850

Query: 893 SVERIRESEI 902
            ++RI E ++
Sbjct: 851 GLQRIVEPDV 860


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/911 (42%), Positives = 569/911 (62%), Gaps = 74/911 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K  H LL D+ K+TVDF PNYDGS  +P VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLAKIGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C  ++++P   +D L+EI+  PDFPT  ++ G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACQHLLNHPQASIDELIEIVPAPDFPTAGIVYGVQGVRDGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK+I  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQPKLLNLRELLECFLSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L +AR+R HVL GLA+A+AN+DE + II+ +P P  A++ LM R+W+++ ++D++ 
Sbjct: 366 TLYELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVRDMLS 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                +               + + SDG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAQGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I + LDIL+   R+  II  EL+++K E   PRR++I     ++  ED I  +D
Sbjct: 486 REVMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+  +VM+D+D++  LFI +TH  +L FS+ G 
Sbjct: 546 MVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  AT  G V
Sbjct: 606 VYWLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFLATSLGTV 662

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  F +  R G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R   
Sbjct: 663 KKTPLEAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVRPM- 721

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG+ L +G QVI++                         L++G          
Sbjct: 722 GREARGVRGMQLEEGQQVIAL-------------------------LVAGG--------- 747

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                             + Q +LT +E G+GKRT   ++    R  KG+ A   S+ N 
Sbjct: 748 ------------------ESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN- 788

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   V  + +I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 789 -GRVVAATLVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 847

Query: 898 RESEIVDEAES 908
            E++   +AES
Sbjct: 848 AETDAEADAES 858


>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
 gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
          Length = 889

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/907 (43%), Positives = 567/907 (62%), Gaps = 71/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  
Sbjct: 186 NLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++D+  
Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDM-- 423

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           L+   S T G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 424 LVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQ 483

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I  
Sbjct: 484 EYREVMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITP 543

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ 
Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654
           G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  AT  
Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R
Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRG++L +  QVI+M +   A A+                         T+
Sbjct: 720 PM-GRQARGVRGMNLEENQQVIAMLV---APAE-------------------------TA 750

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +   S  G+               +LT +E G+GKRT   ++    R  KG+ A   S+
Sbjct: 751 GEGAQSGAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +
Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGL 853

Query: 895 ERIRESE 901
           +R+ ES+
Sbjct: 854 QRVMESD 860


>gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
 gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
          Length = 904

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/905 (45%), Positives = 571/905 (63%), Gaps = 37/905 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422

Query: 431 IDLI-------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  +G   L+E+Q   ILE+RL RLTGL +D + +E   L  
Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL+SVK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVSVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P        +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPV---RDYADGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     + DILL    G+ VRF    +R   GR + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A    DE          +    +GD   +    +D+SV 
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGIEDEN---EDDSGVEEAAANGDA--VIEGADDASV- 772

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          Q+ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 773 ---------------QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +  +D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSSDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDAS-- 873

Query: 903 VDEAE 907
           +DE E
Sbjct: 874 IDEDE 878


>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
 gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
          Length = 861

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/903 (43%), Positives = 564/903 (62%), Gaps = 70/903 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D+   K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +W
Sbjct: 2   TDQFFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR  LI+GQGNFGSVDGD  AA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + AH LL D+ K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DGC+AV+ + DI +D L++II  PDFPT  +I G  G+K  Y TGRG 
Sbjct: 182 TNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGR 241

Query: 248 IVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +++R  +H E    GDR+ I+V E+PYQVNKA +LE+I ELVR+K+I  I+DLRDESD+ 
Sbjct: 242 VIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKS 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  IL+ F+  R 
Sbjct: 302 GMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S  P  A+  LM+R W +  
Sbjct: 362 EVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPL 421

Query: 427 IKDLIDLIDDSSYTIGSDGTM----------YLSEVQTRAILELRLARLTGLGRDDIRNE 476
           +++++  +D        DG +           LSEVQ +AILELRL RLTGL +D I  E
Sbjct: 422 VEEMLARVDQDKAR--PDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGE 479

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              +   I + +DIL+   R+  II  EL ++K +    RR+ I     D+  ED I  +
Sbjct: 480 YREIMEVILDLIDILARPERINQIISDELNAIKTQFGDARRSEIEPFGGDINIEDLITPQ 539

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVTVSH GY+K  P+  YR+QRRGG+G+     +D+DF+  LF+ +TH  VL FSS G
Sbjct: 540 DMVVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFG 599

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y  KV+ LP G   +RGK ++N+L L +GE+I  ++P  E     ++ +V   T +G 
Sbjct: 600 RCYWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKE---FRDDQFVFMCTANGT 656

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L DF +   +G IA+ LD  D ++ V     ++ ++L +  G+ VRF  + +R  
Sbjct: 657 VKKTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAM 716

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVRG+ L +G QVIS+ +                                    
Sbjct: 717 -GRNATGVRGMMLGEGQQVISLLVT----------------------------------- 740

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                        C E    +Q +LT S+ G+GKRT + +FR ++R  +G+ A D++   
Sbjct: 741 -------------CSE----DQMVLTASDGGYGKRTRAGEFRHTSRGTQGVIAMDLTDKT 783

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            +  LVA   V + D ++L++  G LIR  V+E+R   R+ +GV + +  + E+++S+ +
Sbjct: 784 GL-KLVAASLVEETDDVMLITTGGVLIRTKVSEVRETGRSAQGVRLINLDEGEKLISLVK 842

Query: 897 IRE 899
           + E
Sbjct: 843 VAE 845


>gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1]
          Length = 862

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/874 (45%), Positives = 553/874 (63%), Gaps = 70/874 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPV RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD +
Sbjct: 1   VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF PNY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL EV+DGC+A I++ +I ++ LM
Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVN 276
           E I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  +   RE I+V EIPYQVN
Sbjct: 181 EYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVT 300

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  IL AFV  R EVV RRT + L KARDRAH+L  LAIA+AN
Sbjct: 301 FGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALAN 360

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD---------SSYTIGSDGTM 447
           +D ++ +IR +  P  A+  L+   W   ++  +++   D         + + I  DG  
Sbjct: 361 IDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGI-RDGKY 419

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
           YL+E Q +AIL+LRL +LTGL  + + +E   L   I E + IL +  RL+ +I++EL++
Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVA 479

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +K++ +  RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S
Sbjct: 480 IKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKS 539

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   
Sbjct: 540 AARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPN 599

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           ERIT I+P  E E      +V  AT  G V++  L++F +   +G IA+ L+  DE++ V
Sbjct: 600 ERITAILPVREYEEG---CHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 656

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +     N+++L + LG+ VRFP   +R   GR + GVRGI+L   D+VIS+ I       
Sbjct: 657 DLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVRGINLNGDDRVISLIIP------ 709

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                              GD E                             ILTV+E G
Sbjct: 710 ------------------RGDGE-----------------------------ILTVTENG 722

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT+  ++   +R+ +G+ +  VS+ N  G +V    V   DQI++++D GTL+R  V
Sbjct: 723 YGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMITDAGTLVRTRV 780

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +E+ +  R T+GV +  TA+DE VV ++R+ E E
Sbjct: 781 SEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 814


>gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
 gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
          Length = 922

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/939 (43%), Positives = 561/939 (59%), Gaps = 110/939 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252
           NL EV+DGC+A+IDN D+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             V  I+K  G R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G RV
Sbjct: 246 VEVEDIDKVGG-RQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG   DV+LN LY  T +QS+F +N+VAL   +P+   L  +L+ FV  R EVV 
Sbjct: 305 VIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ +
Sbjct: 365 RRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVEAM 424

Query: 431 IDLID-DSSYTIGSD-------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++    DS    G D       G  YLS  Q +AILELRL RLTGL  + +  E   +  
Sbjct: 425 VERAGADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILS 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E + IL+S  RL+ +I++EL  VK E    RRT I+    D+   D I  E+ VVT+
Sbjct: 485 LIGELIRILTSPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y AQRRGGKG+S   ++DED+V  L + ++H ++L FSS G VY  +
Sbjct: 545 SHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYWLR 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------------EDE-------- 640
            + +P  S  ARG+ L+N+L L++GERIT ++                 +DE        
Sbjct: 605 TFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGLVIEGEA 664

Query: 641 --------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                               +     ++  AT  G V++  L  F +   +G IA+KL+ 
Sbjct: 665 TEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKLEE 724

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        +++L +  G+ +RF  S +R   GR + GVRG+ L K  ++ISM  
Sbjct: 725 GDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQRLISML- 782

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                       I E   Q        I
Sbjct: 783 --------------------------------------------IPESGAQ--------I 790

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A   S+ N  G LV    V D ++I+L+SD+G
Sbjct: 791 LTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISDQG 848

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           TL+R  V+E+  + R T+GV +   AKDE +V +ER++E
Sbjct: 849 TLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQE 887


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
          Length = 893

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/905 (43%), Positives = 557/905 (61%), Gaps = 84/905 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+  + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG +++R  +H E 
Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++  +D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGD 430

Query: 438 S---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +               Y +  DG   LSE Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 AAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMA 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II +EL ++K E  T     RR  I     +++ ED I   DM
Sbjct: 491 TIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +L FS+ G V
Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y  KVW +P G+  +RGK ++N+  L  GE++T ++P   F ED       YV  AT  G
Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDH------YVFMATSRG 664

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R 
Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRG+ L +G  VI++                         L++GD       
Sbjct: 725 M-GRNARGVRGMMLEEGQTVIAL-------------------------LVAGD------- 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + Q +LT +E G+GKRT   ++    R  KG+ A   S  
Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V    V  +D+I+L++  G L+R  V EIR   RAT+GV + S      +  V 
Sbjct: 792 N--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVR 849

Query: 896 RIRES 900
           R+ ES
Sbjct: 850 RVVES 854


>gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259]
 gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259]
          Length = 849

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/905 (43%), Positives = 574/905 (63%), Gaps = 74/905 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   EQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR  LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP+VL  + PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMARIAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL ++ +   A++D P  D+++L+ I++ PDFPT  +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNLTDICNALFALLDAPATDIESLISIVQAPDFPTAGIIYGLSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R   H+E    SG ++ I++ E+PYQVNKA +L +I ELVR+K+I  IADLRDESD+ G
Sbjct: 242 MRATCHVEDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV IELKRG +ADV+LN LY+ T +Q  F +NMVAL   +P    L  +L AF+  R E
Sbjct: 302 MRVYIELKRGENADVVLNNLYKQTQMQDTFGMNMVALIDGQPRLLNLKEMLDAFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+R H+L GLA+A+AN+DE+V +I+ S  P  A+  L+ R+W ++ +
Sbjct: 362 VVTRRTVFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMV 421

Query: 428 KDLIDLIDDS---------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           ++++  ID            + + +DG  +LSE+Q + ILE++L RLT L  D I  E  
Sbjct: 422 EEMLARIDPEYSRPVNMGPEFGLHADG-YHLSEIQAQRILEMQLQRLTNLESDKILAEYK 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I + LDIL++ +R+  II++EL  V+D+    RR+ IVE   DM  ED I  E+M
Sbjct: 481 EIMAKIADLLDILANPARITQIIREELTQVRDQFGDGRRSTIVENAQDMSMEDLIKPEEM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PL  YRAQ+RGG+G+     +DEDF+  +F+ +TH  +L FS+ G +
Sbjct: 541 VVTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRL 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGN 656
           Y  KV+ +P G   ARGK ++N+L L  GE+I+ ++P    +DE      YV  AT +G 
Sbjct: 601 YWLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPVKTFDDEH-----YVFMATANGI 655

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  LS+F +   +G IA+ LD  D +         +D++L +  G+ VRF  + +R  
Sbjct: 656 VKKTPLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPM 715

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV G+ LAKG ++IS+                         L++ D       +
Sbjct: 716 -GRAARGVIGMKLAKGAKLISL-------------------------LVAED-------E 742

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           ND                    F+LT +E G+GKRT   ++    R+ +G+ A   S+ N
Sbjct: 743 ND--------------------FVLTATENGYGKRTPIAEYTRHARATQGMIAIQTSERN 782

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V  +D+I+L++  G LIR  V EIR  SRAT+GV + +  K E+++S+E+
Sbjct: 783 --GKVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRATQGVTLINLDKGEKLISLEK 840

Query: 897 IRESE 901
           + E++
Sbjct: 841 VAETD 845


>gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 935

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/948 (42%), Positives = 575/948 (60%), Gaps = 112/948 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G RVV
Sbjct: 246 ADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEAMV 425

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  
Sbjct: 426 ERAGADACRPENLDPQYGL-RDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILT 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL++  RL+ +I++EL  VK +    RRT I+E  LD+   D I  E+ VVT+
Sbjct: 485 QIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVVTI 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGG+G++   +++ED+V  L + ++HT++L FSS G VY  K
Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------------------- 636
            + +P  S  +RG+ L+N+L L++GERIT ++                            
Sbjct: 605 TYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVIEH 664

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                         +DE +    Y+  AT  G V++  L  F +   SG IA+KL+  D 
Sbjct: 665 DDVDDVEGDDDSDEKDEPT--GAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 722

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R+  GRN+ GVRG+ L +G ++ISM     
Sbjct: 723 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISML---- 777

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I E   Q        ILT 
Sbjct: 778 -----------------------------------------IPEPGAQ--------ILTA 788

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S +G+GKRT+  +F    R G+G+ A   ++ N  G LV    V + ++I+L+SD+GTL+
Sbjct: 789 SVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERN--GPLVGAVQVLEGEEIMLISDQGTLV 846

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDEAES 908
           R  V+E+    R T+GV +   +K E +V +ER++E    E++++ E+
Sbjct: 847 RTRVDEVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEA 894


>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
 gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
          Length = 847

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/889 (44%), Positives = 561/889 (63%), Gaps = 61/889 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+  EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M +MG +WNK Y K
Sbjct: 6   KETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R  LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH +L D+ ++TVDF PNYD    EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+++ C+A++D+ D+    L  ++ GPDFPT  ++LG  G   AY +GRG +V+R  
Sbjct: 186 NLTEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAIEAYRSGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      R+ I V+E+PYQVNKA ++E+IAE+V+EKR+  I+DLRDESD+ G R+ I
Sbjct: 246 AEIETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+V+LN LY++T+LQS+F++NMVAL    P+   L   LKAF+  R EVV RR
Sbjct: 306 ELKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L KARDRAH+L GLA+A+ NLD ++ +IR + +P  A+ +++ R W    +  L+ 
Sbjct: 366 SIFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLA 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              + S  + +DG  +LSE Q +AIL+LRL RLTGL +D IR E   L   I+E L+IL 
Sbjct: 426 ERGEPSAGLQADG-YHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILG 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S +RL+ +I+ EL++++D+    RR+ IV     + +ED I  E+MVVT +H GY+K  P
Sbjct: 485 SDARLMAVIRAELVAIRDQYGDARRSEIVADTGVIANEDLIAEENMVVTFTHAGYIKAQP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           ++ + AQRRGG+G+     ++EDFV  +F  STH +VLFFS+LG V+ +KV++LP     
Sbjct: 545 VTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQSGRS 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK ++N+LSL   E ITT++P  E +      YV   T HG V++  L ++ +    G
Sbjct: 605 ARGKPIVNLLSLAPSEGITTVLPVREFQEGQ---YVCMVTAHGVVKKTPLMEYSRPRSQG 661

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  D +++V     + + +L T+ G  VRFP   +R   GR + GVRGISL   
Sbjct: 662 INAINLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPM-GRTARGVRGISLDAD 720

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS  IV   D D                                             
Sbjct: 721 DRVISAQIV---DPD--------------------------------------------- 732

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q ILT + KG+GK T+  ++R +NR GKG+ A   +  N  G +V    V ++D+
Sbjct: 733 -----QVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARN--GQVVGALAVKESDE 785

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LVS+ GTLIR+ V  IR   R  +GV +   A DE++  +  I +++
Sbjct: 786 LMLVSNGGTLIRIAVQGIRRTGRNAQGVRLIQLAPDEQLAGLALIADAQ 834



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V  V+  G VK+ PL  Y   R   +G + + +   D +  + +       + F+  G  
Sbjct: 637 VCMVTAHGVVKKTPLMEYSRPR--SQGINAINLDPGDRLVAVCLSDGQREFMLFTRKGMA 694

Query: 599 --YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             + E   R P+G   ARG   +  +SL+  +R+ +      D+       ++ AT  G 
Sbjct: 695 VRFPEDKVR-PMGR-TARG---VRGISLDADDRVISAQIVDPDQ------VILTATAKGY 743

Query: 657 VRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +   + ++ + NR GK  IA++ ++R+ +++      + ++++L +  G  +R  +  I
Sbjct: 744 GKLTNVEEYRRTNRGGKGVIAIQTNARNGQVVGALAVKESDELMLVSNGGTLIRIAVQGI 803

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           R   GRN+ GVR I LA  +Q+  +A++  ADA  +   C
Sbjct: 804 R-RTGRNAQGVRLIQLAPDEQLAGLALI--ADAQEEAGQC 840



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q++  V+  G  K+T   ++  S    +GI A ++   +    LVAV   +   + +L +
Sbjct: 635 QYVCMVTAHGVVKKTPLMEY--SRPRSQGINAINLDPGDR---LVAVCLSDGQREFMLFT 689

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            KG  +R P +++R   R  +GV   S   D+RV+S + +   +++
Sbjct: 690 RKGMAVRFPEDKVRPMGRTARGVRGISLDADDRVISAQIVDPDQVI 735


>gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107]
 gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107]
          Length = 883

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/739 (50%), Positives = 508/739 (68%), Gaps = 15/739 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV GC+A++DNPDI +D LME I GPDFPTGA+I GR GI  AY TGRG +V+R  
Sbjct: 186 NLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGAIINGRAGIVEAYRTGRGRVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE  +   RE I+VTEIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R+VI
Sbjct: 246 AEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+  S DV+LN L+  T LQ+ F VNMVAL+  +P+   L  +L+AF+  R EVV RR
Sbjct: 306 EVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQPKLLNLKDMLEAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P  A+  L  R W A  +   ++
Sbjct: 366 TVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLE 425

Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              D++         Y +  DG  YLS  Q +AIL+LRL RLTG+  D +  E +    E
Sbjct: 426 RAGDNACRPEDLEGNYGV-IDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKE 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L+IL +  RL+ +I+ EL  V  +    RRT I+   LD+  ED I  ED VVT+S
Sbjct: 485 IAEYLEILGNAIRLMEVIRAELEQVIADFGDARRTEIIASSLDLTTEDLIAVEDRVVTIS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL+ Y+AQRRGG G+S   ++DEDFV  L I STH ++L F+S+G VY  KV
Sbjct: 545 HGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKVYSLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P    Q+RG+ ++N+L L +GERIT+I+P    +S  N+ ++  AT+ G V++  L+
Sbjct: 605 YMIPEAGRQSRGRPVVNLLPLEEGERITSILPV---KSYDNDHFIFMATRKGTVKKTVLT 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  +  +GK A++LD  D ++         D++L +  G+  RF  S +R   GR+S G
Sbjct: 662 EFQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAM-GRSSRG 720

Query: 724 VRGISLAKGDQVISMAIVL 742
           VRGI +A+G  ++ M I L
Sbjct: 721 VRGIRIAEGQFIVGMVIPL 739



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 23/249 (9%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G  +   L+D+    R G  K A  +   D +  +   +  + IL  T +G+ 
Sbjct: 540 VVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKV 599

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH----- 757
               +  I   AGR S G   V  + L +G+++ S+  V   D D+   +   K      
Sbjct: 600 YSLKVYMIPE-AGRQSRGRPVVNLLPLEEGERITSILPVKSYDNDHFIFMATRKGTVKKT 658

Query: 758 -MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            ++  + L +     I   + D+ V   ++   C         ++  S  G   R     
Sbjct: 659 VLTEFQSLRANGKRAIELDEGDTLVGTAVTNGACD--------VILFSSSGKAARFRESQ 710

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            R   RS +G+R   +++   I  +V   P+    Q++ VS+ G   R PV+E     R 
Sbjct: 711 VRAMGRSSRGVRGIRIAEGQFIVGMV--IPLAGG-QVLTVSENGYGKRTPVDEFPAKGRG 767

Query: 877 TKGVVIFST 885
           ++GV+   T
Sbjct: 768 SQGVIGMQT 776


>gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
 gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
          Length = 860

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/902 (43%), Positives = 562/902 (62%), Gaps = 76/902 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+   G R
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + +I+ +P P  A++ELM RSW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERISAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++                         L++GD                  
Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   E 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEI 842

Query: 907 ES 908
           +S
Sbjct: 843 DS 844


>gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616]
 gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
          Length = 867

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/901 (43%), Positives = 564/901 (62%), Gaps = 76/901 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAEAE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 IKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLDEGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852

Query: 901 E 901
           E
Sbjct: 853 E 853


>gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
 gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
          Length = 889

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/901 (43%), Positives = 564/901 (62%), Gaps = 76/901 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 33  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 92

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 93  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 152

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 212

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 213 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 272

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 273 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 332

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 333 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYEL 392

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +  
Sbjct: 393 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAEAE 452

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 453 NAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 512

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 513 MAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQDMVV 572

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 573 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 632

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 633 IKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 689

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 690 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 748

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G QVI++                         L++G             
Sbjct: 749 ARGVRGMQLDEGQQVIAL-------------------------LVAGS------------ 771

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 772 ---------------EDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+
Sbjct: 815 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 874

Query: 901 E 901
           E
Sbjct: 875 E 875


>gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815]
 gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815]
          Length = 859

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/895 (43%), Positives = 560/895 (62%), Gaps = 76/895 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF+PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL E+VD C  
Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +VI
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVI 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSHFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  A++ELM RSW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATSGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + +Y + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL ++K E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITSIIFDELTTIKSEFGDERRSKIEMNATELNTEDLITPQDMVVTMSHSG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVYWLKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++                         L++GD                  
Sbjct: 717 MQLEDGQSVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E
Sbjct: 783 VDPEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 18/217 (8%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   + LG VK+ PL  +   R   KG   V + D D++    I      V+ FS  G 
Sbjct: 638 FVFMATALGTVKKTPLEAF--SRPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGK 695

Query: 598 V--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
              + E   R P+G  +ARG   +  + L  G+ +  ++   +++ S     V+ AT++G
Sbjct: 696 AVRFDENDVR-PMGR-EARG---VRGMQLEDGQSVIALLVAGDEQQS-----VLTATENG 745

Query: 656 NVRRNKLSDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R  ++++ +  R   G IA++   R+ ++++      E  I+L T  G  +R  +S 
Sbjct: 746 YGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITNTGVLIRTRVSE 805

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           IR   GR + GV  ISL +G ++  +  +  A+AD D
Sbjct: 806 IREM-GRATQGVTLISLDEGTKLSGLQQIAEAEADVD 841


>gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 902

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/909 (43%), Positives = 567/909 (62%), Gaps = 62/909 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLRKIAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV  C+ V+ NP+  +D L+EII  PDFPT  +I G   ++  Y TGRG +V
Sbjct: 182 IPPHNLDEVVTACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQRVREGYRTGRGRVV 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR H L GLA+A+AN+DE + II+ + NP  A++ELM ++W++S ++
Sbjct: 362 VTRRTIFELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               Y + + G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528
            NE   +  EI + LD+L+   R+  +I+ EL  V+ E      DT RR+ I     ++ 
Sbjct: 482 VNEYKEVMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFIEVNATELF 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +D+VVT+S+ GY+K  PLS YRAQ+RGG+G+     ++ED++  LF+ +TH +
Sbjct: 542 TEDLITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDT 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS  G +Y  KVW +P GS  +RGK ++N+  L +GE+IT I+P    +   +N YV
Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPI---KGYQDNQYV 658

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++ +LSDF    ++G IA+ L+  D ++       ++D++L +  G+ VRF
Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +G QVI+M +                  +     +   
Sbjct: 719 DENDVRPM-GRTARGVRGMNLGEGHQVIAMLVA----------------PAEAAEGVEAA 761

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +   +   SSV                   LT +E G+GKRT   ++    R  KG+ 
Sbjct: 762 VVDANGIAIPSSV-------------------LTATENGYGKRTPITEYTRHGRGTKGMI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V+  DQI+L++  G L+R  V+EIR   RAT+GV + +  + 
Sbjct: 803 AIQTSERN--GKVVAAALVSPEDQIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDEG 860

Query: 889 ERVVSVERI 897
            R+  ++RI
Sbjct: 861 TRLSGLQRI 869


>gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 844

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/899 (44%), Positives = 565/899 (62%), Gaps = 74/899 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I  E+ +SYL YA++VI+GRA+PD+RDG KPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL KDTV+F PNYD + Q P V+  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+  C+A ID+ +I ++ LM+ + GPDFPT  +I G  GI+ AY TGRG I IR  
Sbjct: 186 NISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSKGIEQAYGTGRGRIYIRAK 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           ++IE  + SG R+ I+V EIPYQVNK  ++EKIAELV+EKR+  I+ LRDESD++G R++
Sbjct: 246 ANIEVDEKSG-RQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRIL 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A A+VILNQLY  T LQ  F +NMVAL+  +P+  TL  IL+AF+  R EVV R
Sbjct: 305 IELKRDAIAEVILNQLYSLTQLQVSFGINMVALDHGQPKVMTLKDILRAFIRHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KARDRAH+L  LA+A+AN+D ++++IR + NP  A+  L+ ++W    +  ++
Sbjct: 365 RTLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSML 424

Query: 432 DLIDD-----------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D + D           + + I  +G  + +E Q +AIL+LRL +LTGL  D++ NE   L
Sbjct: 425 DCVGDEKDIARPEWLEARFGI-HNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKEL 483

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E   ILS   RLL +I++E LS+K +   PRRT I     D+  ED I +ED+VV
Sbjct: 484 LNAIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQEDVVV 543

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K  PLS Y AQ RGGKG+S    +DEDF+  L + +TH ++L FSS G +Y 
Sbjct: 544 TLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGRLYW 603

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP  S  +RG+ ++N+L LN  ERIT I+P    E+     YV  AT  G V++ 
Sbjct: 604 LKVYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYETGQ---YVFMATACGVVKKI 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +   +G   + LD  DE++ V+     N+++L +  G+ +RF    +R   GR 
Sbjct: 661 ALLEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAM-GRT 719

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI LA+ D+V+S+ I+   D D                                 
Sbjct: 720 ARGVGGIRLAQEDRVVSL-IIPRGDGD--------------------------------- 745

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILTV+  G+GK+TS  ++   +R+G G+ +  V+  N  G 
Sbjct: 746 -------------------ILTVTANGYGKKTSKEEYPTRSRNGMGVISIKVNGRN--GN 784

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +V    V++ND +++++D GTL+R   +E+   SR TKGV +  T  +E+VV ++R+ E
Sbjct: 785 VVGAIQVDENDHLMMITDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEKVVGLQRLVE 843


>gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
 gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
          Length = 886

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/907 (43%), Positives = 560/907 (61%), Gaps = 69/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+IDNP+I +D LME I GPDFPTGA+I GR GI  AY TGRG I +R  
Sbjct: 186 NLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGAIINGRAGILQAYRTGRGRIYVRAQ 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE IV+ EIPYQVNKA ++EKIAELV+EK+I  I+++RDESD+ G RVV+
Sbjct: 246 AEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +V+LN LY  T LQ++F +N+VAL   +P+   L  +L+ FV  R EVV RR
Sbjct: 306 EIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDDQPKLLNLKELLEYFVKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R HVL G A+A+AN+DEV+ +I+ SP P  AR  ++ R W    + + +D
Sbjct: 366 TVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLD 425

Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +++         + +  DG+ YLS VQ +AIL+LRL RLTG+  D +  E     I+
Sbjct: 426 RAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   L+IL +  RL+ +I++EL  + ++    RRT I + + D+  ED I  ED VVT+S
Sbjct: 486 IAGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQRRGG G++   ++DEDFV  L I +TH  +L F+S+G V+  KV
Sbjct: 546 HGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKVFWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P+   Q+RG+ ++N+L L +GERIT+I+P  E +   ++ ++  AT  G V++  LS
Sbjct: 606 YQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFD---DDHFIFMATADGTVKKTPLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G  A+ L   D ++         DI+L T  G+  RF    +R   GR S G
Sbjct: 663 QFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSM-GRVSRG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ +A    VI+M                                             
Sbjct: 722 VRGVRMADDVSVIAMV-------------------------------------------- 737

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            + EE  + L + E         GFGKRT   ++    R  +G+ A  +S+ N  G LV 
Sbjct: 738 -VPEEGGKVLTVSEN--------GFGKRTEVTEYPAKGRGSQGVIAMQMSERN--GCLVG 786

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V + D+I+L+S++GTL+R   +E+ ++ R T+GV +    + E +V +ERI E  + 
Sbjct: 787 ATQVFEGDEIMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEGEHIVGLERIDEPPVP 846

Query: 904 DEAESTE 910
           +  E  E
Sbjct: 847 EAVEGGE 853


>gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
 gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
          Length = 922

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/940 (43%), Positives = 562/940 (59%), Gaps = 112/940 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252
           NL EV+DGC+A++DN ++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYVRAR 245

Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             V  I+K  G R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G RV
Sbjct: 246 VEVEDIDKVGG-RQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG   +V+LN LY  T +QS+F +N+VAL   +P+   L  +L+ FV  R EVV 
Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ +
Sbjct: 365 RRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVEAM 424

Query: 431 IDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++            D+ Y +  DG  YLS  Q +AILELRL RLTGL  + +  E   + 
Sbjct: 425 VERAGADSCRPEGLDAQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E + IL++  RL+ +I++EL  VK E    RRT I+    D+   D I  E+ VVT
Sbjct: 484 ALIGELIRILTNPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y AQRRGGKG+S   ++DED+V  L + ++H ++L FSS G VY  
Sbjct: 544 ISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYWL 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------------EDE------- 640
           + + +P  S  ARG+ L+N+L L++GERIT ++                 +DE       
Sbjct: 604 RTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGVVIEGE 663

Query: 641 ---------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
                                +     ++  AT  G V++  L  F +   +G IA+KL+
Sbjct: 664 ATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKLE 723

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D +++        +++L +  G+ +RF  S +R   GR + GVRG+ L K  Q+ISM 
Sbjct: 724 EGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQQLISML 782

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                                                        I E   Q        
Sbjct: 783 ---------------------------------------------IPESGAQ-------- 789

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT SE+GFGKRT    F    R G+G+ A   S+ N  G LV    V D ++I+L+SD+
Sbjct: 790 ILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISDQ 847

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           GTL+R  V+E+  + R T+GV +   AKDE +V +ER++E
Sbjct: 848 GTLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQE 887


>gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
 gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
          Length = 867

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 564/901 (62%), Gaps = 76/901 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN+P HNL EV
Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNVPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAEAE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 IKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLDEGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852

Query: 901 E 901
           E
Sbjct: 853 E 853


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/902 (43%), Positives = 571/902 (63%), Gaps = 67/902 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H LL D+ K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ +++NPD D++ L+ +++ PDFPT A+I G +G+ + Y TGRG +V+R  
Sbjct: 186 NLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAALIYGLSGVHDGYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G+R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+++RDESD+ G RVVI
Sbjct: 246 THFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN L++ T LQ  F +NMVAL   KP    L  +L  F++ R EV+ RR
Sbjct: 306 ELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGKPRTLNLKQMLDCFLSHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W+++ +++++ 
Sbjct: 366 TVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVEEMLA 425

Query: 433 LIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               +SY   S    +        LS+ Q +AILELRL RLTGL +D I  E   +   I
Sbjct: 426 RALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREVMDVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL++  R+  II +EL +++ + D PRR+ IV    ++  ED I  EDMVVT+SH
Sbjct: 486 TDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIEDLIAPEDMVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY KR PL+ YRAQRRGG+G+    M+D+DF+  LF+ +TH  +L FSS G VY  KV+
Sbjct: 546 AGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGRVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G+  +RG+ ++N+  L +GE+I  ++P    ++  ++ +V  AT  G V++  L+ 
Sbjct: 606 EVPEGTRNSRGRPIVNLFPLMEGEKINAVLPV---QAFDDDHFVFMATAEGTVKKTALTA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    ++G IA  LD  D ++ V      +D++L +  G+ VRFP   +R   GR + GV
Sbjct: 663 FSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRPM-GREARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG++L +G +VI+M +                                            
Sbjct: 722 RGMNLEEGQRVIAMLVA------------------------------------------- 738

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                    K +E  +LT +E G+GKRT   ++    R  KG+ A   S  N  G LV  
Sbjct: 739 ---------KDEELSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GKLVGA 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V ++D+++L+S  G LIR  V +IR   RAT+GV + +  +   +  +E++ ESE+ +
Sbjct: 788 CLVEESDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEGTSLAGIEKVAESEVDE 847

Query: 905 EA 906
            A
Sbjct: 848 PA 849


>gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
 gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
          Length = 867

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/914 (43%), Positives = 563/914 (61%), Gaps = 80/914 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLNNPGATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ LM+RSW++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVREMLARAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I +EL SVK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--- 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I   
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852

Query: 898 -RESEIVDEAESTE 910
                 VDEA   E
Sbjct: 853 EEGEGEVDEASDGE 866


>gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003]
 gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003]
          Length = 862

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/895 (43%), Positives = 557/895 (62%), Gaps = 76/895 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NPD  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+   G R
Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++                         L++GD                  
Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAE 837


>gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565]
 gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565]
          Length = 915

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/942 (43%), Positives = 573/942 (60%), Gaps = 124/942 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+V+GC+A+I+N D+ +D LM  I GPDFPTG +I GR+GI  AY TGRGSI +R  + 
Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKAE 247

Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +   EKTS  RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VI
Sbjct: 248 VEVDEKTS--RETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T +Q+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EIKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+  L+ + W   ++  +++
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLE 425

Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              D +         + I  +G  +L+E Q +AIL+LRL +LTGL  + I  E  SL   
Sbjct: 426 KAGDDAARPEWLEPEFGI-REGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDL 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S +RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+S
Sbjct: 485 IAELLHILASPARLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PLS Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV
Sbjct: 545 HQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L +GERIT I+P  E ++     YV FAT +G V++  LS
Sbjct: 605 YQLPEASRGARGRPIINLLPLEEGERITAILPVKEYDAEK---YVFFATANGTVKKTSLS 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------ 717
           DF +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   + R  A      
Sbjct: 662 DFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDV 721

Query: 718 -------------------------------GRNSVGVRGISLAKGDQVISM-------A 739
                                          GR + GVRGI L  GD+V+S+       A
Sbjct: 722 ETDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGEGA 781

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I+   +  Y +R    ++ +  R                   +G IS             
Sbjct: 782 ILTATENGYGKRTALAEYPTKSR-----------------GTQGVIS------------- 811

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
                             ++  R+GK I A                 V D DQI+L+++ 
Sbjct: 812 -----------------IKVDERNGKVIDA---------------IQVEDTDQIMLITNG 839

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           GTL+R  V E+ +  R T GV +  T +DE VV ++RI ES+
Sbjct: 840 GTLVRTRVAEVSVIGRNTGGVRLIRTGEDETVVGLQRIAESD 881



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 75/146 (51%), Gaps = 10/146 (6%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           P  R  A +  + L  G+++ +++  P  E +     ++ AT++G  +R  L+++   +R
Sbjct: 751 PMGRTAAGVRGIKLGAGDKVVSLI-VPRGEGA-----ILTATENGYGKRTALAEYPTKSR 804

Query: 671 S--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              G I++K+D R+ +++        + I+L T  G  VR  ++ + V  GRN+ GVR I
Sbjct: 805 GTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVAEVSVI-GRNTGGVRLI 863

Query: 728 SLAKGDQVISMAIVLHADADYDERIC 753
              + + V+ +  +  +D D ++ + 
Sbjct: 864 RTGEDETVVGLQRIAESDEDENDALA 889


>gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49]
          Length = 851

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/895 (43%), Positives = 558/895 (62%), Gaps = 76/895 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +++NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWIKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI++                         L++G                   
Sbjct: 717 MQLEDGQQVIAL-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837


>gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001]
 gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001]
          Length = 862

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/901 (43%), Positives = 559/901 (62%), Gaps = 76/901 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+   G R
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++                         L++GD                  
Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   + 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEAEGDV 842

Query: 907 E 907
           E
Sbjct: 843 E 843


>gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718]
 gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC
           19718]
          Length = 848

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/903 (43%), Positives = 572/903 (63%), Gaps = 69/903 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C+ ++ +PD+D+  LM  I  PDFPT  +I G +GIK+ Y TGRG ++
Sbjct: 182 IPPHNLGEVIDACLLLLRDPDVDIAELMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   G+R  I++ E+PYQVNKA +L +I ELVR+KRI  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T +Q  F +NMVAL   +P    L  +L  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDHFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A++ LM R+W +S ++
Sbjct: 362 VTRRTLFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVE 421

Query: 429 DLI--DLIDDSSY---TIG-----SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++   +ID + +   T+      SD    LS+ Q +AIL+LRL RLTGL ++ I +E  
Sbjct: 422 EMLLRAMIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYR 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I++ LDIL++  R+  II +EL ++K +   PRR+ +V    ++  ED I   DM
Sbjct: 482 EILDKIRDLLDILANPERITTIIVEELTAIKGQFGDPRRSEVVIDAQNLNTEDLITPADM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  YRAQ+RGG+G+  +  R++DF+ +LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P GS  +RG+ + N++ L Q E+I  ++P    +S  +  YV  +T  G V+
Sbjct: 602 YWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPV---KSFDDTRYVFMSTAGGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ V     ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L  G QVIS                          L+  D E +  L   
Sbjct: 718 RNARGVRGMKLGAGQQVIS--------------------------LLVADNENMAVL--- 748

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                  T +E G+GKRT   ++   NR  +G+ A + +  N  
Sbjct: 749 -----------------------TATENGYGKRTPITEYTRHNRGTQGMIAINTNVRN-- 783

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA   V  +D+I+L++  G +IR  V+EIR   RAT+GV + +    E++  +ERI 
Sbjct: 784 GKVVAAQLVESSDEIMLITTGGVMIRTRVSEIREMGRATQGVTLINLDAGEKLAGLERIV 843

Query: 899 ESE 901
           E++
Sbjct: 844 ETD 846


>gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 861

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/907 (44%), Positives = 575/907 (63%), Gaps = 71/907 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+EH   +    +  +  V+I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSEHT-ENPTHFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF  NYDGS  EP+VL  R PN+L NG  
Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV++ C+  IDN DI +D L+EI+ GPDFPT  +I G +GI+ A
Sbjct: 180 GIAVGMATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGIINGASGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R V HIE    D++ IVVTE+PYQVNKA ++ KIA+LV++KRI  I  LR
Sbjct: 240 YETGKGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+VIEL+RG   +V+LN LY+ T +Q++F +NMVA++   P+  TL  IL+A
Sbjct: 300 DESDKDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKGMPKLMTLKNILEA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R +VV RR+ + LNKAR+ AH+L GLA+A+ N+D+++ +I+ + N   A+  L+ +
Sbjct: 360 FIAHRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAK 419

Query: 421 SWNASDIKDLI---DLI----DDSSYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +W  S IK+LI   D++    +D    +G   DG   LS+ Q +AIL+L+L RLTGL ++
Sbjct: 420 TWQGSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKN 479

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E N L   IK  LDIL +  RL+ +I++EL+ ++      R T+I+E  +D+  ED
Sbjct: 480 KIFDEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANARMTQILEHKIDLTLED 539

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E  VVT+SH GYVK   LS Y+AQRRGGKG+    ++DEDFV  LFI ++H +VL 
Sbjct: 540 LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVLC 599

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVF 650
           FSSLG VY  KV+ LP+ S  ARGK ++N+L L + E I  I+   + DE    N +V  
Sbjct: 600 FSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDE----NHFVFM 655

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G  ++  L++F +  + G IA++L   D+++ VE  + E+DI+L +  G+ +RF  
Sbjct: 656 VTSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFKE 715

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +RV  GR ++GVRGI LA  D+V+S+ +V                        + D  
Sbjct: 716 SDVRV-VGRTAIGVRGIKLANADKVVSLIVV------------------------NQDNP 750

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +T+ +        ++E R Q                              R G G+ + 
Sbjct: 751 ILTTTEKGFGKRTRLNEYRSQA-----------------------------RGGLGVISI 781

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S  N  G +V    + D D+++L+S+KGTL+R    ++ I  R T+GV + +  K E+
Sbjct: 782 KTSDRN--GKVVGAIQITDEDEMMLISNKGTLVRARAVDVSIIGRNTQGVTLINIIKGEK 839

Query: 891 VVSVERI 897
           +VS+ +I
Sbjct: 840 LVSIAKI 846


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  738 bits (1905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/895 (44%), Positives = 557/895 (62%), Gaps = 67/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G   NK Y K
Sbjct: 6   KEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+G +A+ID P++D+DALM+ I GPDFPT  +I G  GI+ AY TGRG + IR  
Sbjct: 186 NLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAGIINGVGGIQLAYRTGRGRVRIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+ IE
Sbjct: 246 ADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG SA+V+LN LY+ T L+S+F +NMVAL   +P+   L  IL+AF+  R EVV RRT
Sbjct: 306 VKRGESAEVVLNNLYQQTQLESVFGINMVALVDGRPQLVNLKQILEAFLRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ A+  ++ R+W    +  L+  
Sbjct: 366 IFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAA 425

Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   DD    +G  +G   L+EVQ + ILE+RL RLTGL ++ +  E   L   I+
Sbjct: 426 TGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIR 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             ++IL     LL +I+ EL  +K E    RR+ I     D++  D I  ED+VVT+SH 
Sbjct: 486 ALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR P+S YRAQ+RGG+GRS    +DEDF+  L++V+TH ++L F+S G V+   V +
Sbjct: 546 GYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFWLPVHQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP     ARG+ +IN + L +GE++  ++P  E    +   +V FAT++G V++  L++F
Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGF---FVFFATRNGTVKKTPLTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 GKIA+ LD  D ++ V       D++L    G+ VRF  S +R   GR + GVR
Sbjct: 663 AFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAM-GRTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+G++V+S+ +    D + D                                    
Sbjct: 722 GIRLAEGEEVVSLVV---PDGEGD------------------------------------ 742

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT SE+G+GKRT   ++    R  +G+ A   S+ N  G LV   
Sbjct: 743 --------------ILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERN--GRLVGAI 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +++  +++L+SD GTL+R   +EI    R T+GV +    + E + +VER+  S
Sbjct: 787 QLSEQHEVLLISDGGTLVRTRASEISQVGRNTQGVTLIRLGEGESLQAVERVDAS 841


>gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
 gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
          Length = 871

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/907 (44%), Positives = 564/907 (62%), Gaps = 74/907 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDG+ Q PVVL  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A+I++ DI +D LM  + GPDFPTGA+I GR GI  AY TGRG I +R  + 
Sbjct: 188 REVVNACLALINDSDITIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRAKAE 247

Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +   EKT   R+ I++ EIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G RVVI
Sbjct: 248 VITDEKTG--RDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++G   DV+LN LY  TSLQ++F +NMVAL   +P    L  IL+AF+  R EVV RR
Sbjct: 306 ELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R HVL GLAIA+AN+D V+ +++ SP+P  AR  L+ +SW   ++  +++
Sbjct: 366 TLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTSMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    D+     G  DG   LS  Q +AIL+LRL RLTGL  + +  E     IEI
Sbjct: 426 RAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLIEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + +DIL    RLL +I++EL  +  E    RRT I +   D+  ED I  ED VVT+SH
Sbjct: 486 ADLMDILQDPERLLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y+ QRRGG G++ + ++DEDFV  L I +TH ++L FS+ G VY  KV+
Sbjct: 546 GGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWIKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+    +RG+ ++N+L L++GER+T+I+P    E   ++ ++  AT +G V++  L+ 
Sbjct: 606 QIPVAGRASRGRPMVNLLQLDEGERVTSILPL---EEHTDDRFIFMATANGYVKKTDLAS 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F     +G  A+ L   D ++         D++L +  G+  RF  SA+R   GR S GV
Sbjct: 663 FAP-RSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPM-GRASRGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI                             +++   R+IS    + T           
Sbjct: 721 RGI-----------------------------NLAEGHRMISLLVPDATGT--------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LTVSE G+GKRT+  DF    R GKG+ A   S+ N  G LV  
Sbjct: 743 ---------------VLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRN--GRLVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI-V 903
             V   D+++L+S++GTL+R   +++    R T+GV I  T + E +V  ERI ESE  +
Sbjct: 786 LQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRAERIVESEASL 845

Query: 904 DEAESTE 910
           +  E+TE
Sbjct: 846 ESPEATE 852


>gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/924 (42%), Positives = 565/924 (61%), Gaps = 88/924 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+ +VK
Sbjct: 6   KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD  AA RYTEC
Sbjct: 66  CARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL DL K+TVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+DG + V+ N +  +D L+EII  PDFPTG +I G +G+++ Y TGRG +V+R  
Sbjct: 186 NITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   + R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A+ +LM R+W++S +++++ 
Sbjct: 366 TIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
              +                 Y I  DG   LS+ Q + IL++RL RLTGL +D I NE 
Sbjct: 426 RTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533
             +  +I + LDIL+   R+  II  EL   K+E        RR+ I     D+  ED I
Sbjct: 486 KEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSSIELNATDLGTEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P++ YRAQ+RGG+G+  +  +++D++  LFI +TH  +L FS
Sbjct: 546 TPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYILCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646
           + G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P       FPED       
Sbjct: 606 NRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTFPEDR------ 659

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+  +T  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ V
Sbjct: 660 YIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAV 719

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  + +R   GR + GVRG++L +G QVI++                            
Sbjct: 720 RFDENDVRPM-GRTARGVRGMNLEEGQQVIALL--------------------------- 751

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                             ++E   Q +       LT +E GFGKRT   ++    R  KG
Sbjct: 752 ------------------VAENEQQSV-------LTATENGFGKRTPITEYTRHGRGTKG 786

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   S+ N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  
Sbjct: 787 MIAIQTSERN--GKVVAATLVDAADEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVE 844

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
              ++  ++RI ES+I ++    E
Sbjct: 845 DGTKLSGLQRILESDIEEDQSGAE 868


>gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
 gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
          Length = 867

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/897 (43%), Positives = 557/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL SVK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+E+R   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160]
 gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160]
          Length = 860

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/902 (43%), Positives = 561/902 (62%), Gaps = 76/902 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+   G R
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + +I+ +P P  A++ELM R+W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERISAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++                         L++GD                  
Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   E 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEN 842

Query: 907 ES 908
           +S
Sbjct: 843 DS 844


>gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112]
 gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG]
 gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112]
 gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG]
          Length = 868

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/898 (42%), Positives = 566/898 (63%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS  + L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848


>gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
 gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
          Length = 866

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/891 (43%), Positives = 555/891 (62%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+   G R
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + SDG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYSVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ +INI  L +GE+IT ++P  E  +   + +V   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKTPLEAFG 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++                         L++GD                  
Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 783 VDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833


>gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315]
 gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315]
          Length = 867

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/897 (43%), Positives = 558/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I +EL +VK E    RR+RI     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
 gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
          Length = 867

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/897 (43%), Positives = 556/897 (61%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++N D  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLNNADATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++D++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVRDMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849


>gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549]
          Length = 868

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/898 (42%), Positives = 566/898 (63%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS  + L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQGDVED 848


>gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu]
          Length = 851

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/895 (43%), Positives = 557/895 (62%), Gaps = 76/895 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F+A R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLAHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442
            HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +  + T G 
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATAGG 420

Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                            DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDILS   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILSRPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHSG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI+M                         L++G                   
Sbjct: 717 MQLEDGQQVIAM-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837


>gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
 gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
          Length = 858

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/910 (44%), Positives = 567/910 (62%), Gaps = 69/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH +L DL K+TVDF  NYDG+ + P VL  R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EVV  C+A+++NP+I +D LME I GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAIISGRAGILQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I   + +R+ I++ EIPYQ+NKA ++E+IAELV+EK+I  I++LRDESD+ G R
Sbjct: 243 RAKAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRG   DV+LN LY  T LQS+F +NMVAL   +P+   L  I+ AF+  R EVV
Sbjct: 303 VVIELKRGEMGDVVLNNLYAQTQLQSVFGINMVALENGQPKVMNLKEIIDAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT YLL KAR+R H+L GLAIA+AN+D ++ +I+ SP+P  AR  L+ + W+  D+  
Sbjct: 363 TRRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVA 422

Query: 430 LIDLI-DDSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   +D+    G        DG   LS  Q +AILELRL RLTGL  + + NE     
Sbjct: 423 MLEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI + L IL    RL  +I++EL  V +E    R T IV+   D+  ED I  ED VVT
Sbjct: 483 KEIADYLHILGDSDRLKQVIREELEEVVEEFGDERLTEIVDSQHDLSVEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PLS Y+AQRRGG G+S   ++DEDFV  L + STH+++L F++LG VY  
Sbjct: 543 ISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+   Q+RG+ ++N+L L+ GER+T+I+P  E      + Y+  AT  G V++  
Sbjct: 603 KVYQIPVAGRQSRGRPMVNLLPLDPGERVTSILPVAE---YTEDHYIFMATAKGIVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+DF +    G  A++L   D ++       E+D++L +  G+ VRF    +R   GR +
Sbjct: 660 LTDFSRPRSVGLRALELAEDDVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRPM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI +   D++I  A+++  +  Y                                 
Sbjct: 719 RGVRGIRMGDEDEMI--ALIIPQEGSY--------------------------------- 743

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +LT S  G+GK+T + +F    R  KG+ A   +  N  G L
Sbjct: 744 ------------------VLTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRN--GPL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900
           V    V + D+++L+S++GT++R  V+EI    R T+GV +    + E +V + +I ES 
Sbjct: 784 VGAVQVGEADELMLISNQGTMVRTRVSEISTLGRNTQGVRVIRLKEGEELVRITQIEESD 843

Query: 901 EIVDEAESTE 910
           E+  EAE+ E
Sbjct: 844 ELPSEAEAAE 853


>gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
 gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
          Length = 868

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848


>gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 868

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848


>gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 829

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/904 (43%), Positives = 566/904 (62%), Gaps = 87/904 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I S+++      +++I+ E++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M
Sbjct: 1   MTEPSIESNQQ-----PTIAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G  +N+ Y+K ARI G+V+GKYHPHG+ A YD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 56  RELGNTYNRPYIKSARIVGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSM 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ +    L+ DL K+TVDF PNYD S QEP VL +R PN+L+NG  
Sbjct: 116 DGDSAAAMRYTEARMTRLDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSE 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT IP HNL EV++G +A++DNP+I +  LMEII GPDFPTG  I GR GI+ A
Sbjct: 176 GIAVGMATKIPPHNLTEVINGLIALVDNPEITVHQLMEIITGPDFPTGGFICGRAGIREA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  +HIE+     E IV+TEIP+Q NKAA++EKIA L++EKRI  IA++R
Sbjct: 236 YETGRGVIVMRSKTHIEQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV++L++    D+++NQLY+ T LQ  F + ++ +   KPE   L  IL+ 
Sbjct: 296 DESDRHGVRVVLDLRKDEIPDIVINQLYKMTPLQKSFGIILLCIVNNKPEILNLKQILQH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R+ VV RRT + L KA +RAH+L GL IA+ +LDEVV +IR S NP  A+  L+ R
Sbjct: 356 FLAHRKTVVYRRTAFELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q + IL++RL RLTGL RD I ++ N +
Sbjct: 416 --------------------------FELSEIQAQTILDMRLQRLTGLERDKIISDYNEI 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     +L+  + ++ II++E   +++E    RRT I++   ++  ED I  E+MVV
Sbjct: 450 QAKISWLKQVLADDNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KR PL++YRAQRRGGKG  G+V  ++DFVT L+  S+  + LFF++ G V+ 
Sbjct: 510 TVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTLEDDFVTSLYTASSLDTFLFFTNKGRVFW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP+    ARGKA++N+L L + E++  I+P  +  +  + + V+  TK G V++ 
Sbjct: 570 RKVYELPLAGRTARGKAIVNLLELGEDEKVAAILPVADLANMDDTVSVLTVTKQGRVKKT 629

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +S++ +  R GK  + +   DEILS    + +++I L TK G  + F  S +R   GR 
Sbjct: 630 FISEYKRPLRKGKFGLTIRDDDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAM-GRL 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GI+L   D+V+ +A+                                  LK+D+S
Sbjct: 689 AAGVKGITLGDDDEVVGVAV----------------------------------LKSDAS 714

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILTV+E G+GKRT+  ++++ +R GKG+     S+ N  G 
Sbjct: 715 -------------------ILTVTENGYGKRTAVSEYKLQSRGGKGVFTIKTSERN--GN 753

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V V PV D DQ++LV++ G +IR+P++ +RI  R T+GV + +  + E VV +  +   
Sbjct: 754 VVGVLPVVDEDQVMLVANSGKVIRMPMDTVRIIGRNTQGVRLINLDEGELVVDMSMLARE 813

Query: 901 EIVD 904
           E VD
Sbjct: 814 EGVD 817


>gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 847

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/897 (43%), Positives = 572/897 (63%), Gaps = 72/897 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 9   KILIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPH + A+YDA+ RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 69  SARIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 128

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTV++ PNYD + Q P V+  R PN+L+NG  GIAVGMATNIP H
Sbjct: 129 RMSKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPPH 188

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI--R 251
           NL E++DGC+A ID+  I ++ LM+ I GPDFPT A+I G+ GI+ AY TGRG I I  R
Sbjct: 189 NLFEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAAIINGKQGIEEAYRTGRGKICIRAR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +  +E  +G RE IVV+EIPYQVNKA ++EKIA+L++EKRI  I+ LRDESD+ G R++
Sbjct: 249 AIVEVEANTG-REIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRII 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I +KR A A+V+LN LY  T LQ  FS+NMVALN  +P+ F+L  IL AF+  R++++ R
Sbjct: 308 IGIKRDAVAEVVLNNLYSMTQLQVSFSINMVALNNGQPKIFSLKEILSAFICHRQDIITR 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI---- 427
           RT + L KAR+R H+L  L +A AN++ ++ + R +  P  A+ +L+  +WN   I    
Sbjct: 368 RTIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQ 427

Query: 428 -KDLIDLID----DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +++  ++     +  Y I  DG  YL+E Q +AIL+LRL  LT L    +  E   L  
Sbjct: 428 CREVHHMVRPEWLEEKYGI-HDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLT 486

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + L IL+   RL+ +I++EL  ++ +   PRRT I     ++  ED I +E++VVT+
Sbjct: 487 KIVDLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKENVVVTL 546

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ GYVK  PL+ Y AQ+RGGKG+S V M++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 547 SYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRGRMYWMK 606

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  +RG+ ++N+L L   ERITTI+P  + E   N   V  AT  G V++  L
Sbjct: 607 VYQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCN---VFMATASGTVKKTAL 663

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F +   +G IA+ L   DE++ V      N+++L +  G+ VRFP + +R   GR + 
Sbjct: 664 IAFSRPRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRSM-GRTAT 722

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+LA+GD+V+S+ I                                       +++
Sbjct: 723 GVRGINLAEGDRVVSLII--------------------------------------PNID 744

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G+               ILTV++ G+GKRT+  ++   +R+ +G+ +   S+ N  G ++
Sbjct: 745 GH---------------ILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERN--GQVI 787

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               V+++DQI+L++D GTL+R  V+E+ I  R T+G+ +  TA++E VV ++RI E
Sbjct: 788 GAIQVDEHDQIMLITDAGTLVRTRVSEVSIVGRNTQGITLIRTAENEHVVGLQRIAE 844


>gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
 gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
          Length = 867

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/897 (43%), Positives = 557/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL SVK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI+M                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+E+R   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 868

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848


>gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
 gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
          Length = 869

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/906 (45%), Positives = 564/906 (62%), Gaps = 74/906 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   VSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQD+SLR  LI+GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K AH LL DL K+TVDF PNYDGS Q P VL  R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 KKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV GC+A I+N DI +D LMEII GPDFPTGA I GR GI  AY TGRG I +R  +H
Sbjct: 188 KEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATINGRAGIVQAYRTGRGRIYVRAKAH 247

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E+    ++E I++TEIPYQ+NKA ++E+IAELV+EK+I  I++LRDES +   RVVIEL
Sbjct: 248 VERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKD-IRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   DVILN LY  T ++ +F +N+VAL   +P+   L  +L+ FV  R EVV RRT 
Sbjct: 307 KRGEIGDVILNNLYAQTQMEGVFGINVVALVDGQPKILNLKQLLECFVRHRREVVTRRTI 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P  AR  L+ R W ++ +   ++  
Sbjct: 367 YLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFLERA 426

Query: 435 D-DSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
             D+    G        D   YLS  Q +AILELRL RLTG+  D + +E       I E
Sbjct: 427 GADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVARIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L+IL S +RL+ +I++EL  ++      RRT I     D+  ED I  ED VVT+SH G
Sbjct: 487 FLEILGSSTRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVVTISHGG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K   LS Y+AQRRGG G++   ++DEDFV  L I STH ++L F++ G VY  KV+++
Sbjct: 547 YAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNAGKVYWLKVFQI 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDF 665
           P+   Q+RG+ +IN+L L++ ERIT+I+P  E DE      ++  AT +G V++  L+ F
Sbjct: 607 PLAGRQSRGRPIINLLPLDESERITSILPVREYDEDH----FIFMATANGTVKKTPLTQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG  A+ L+  + ++        +D++L +  G+ VRF  + +R   GR S GVR
Sbjct: 663 ARPRTSGLRAIDLEEDNHLVGTAVTDGNSDVMLFSSEGKAVRFNENDVRSM-GRTSRGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+G +VISM                         L + D + +T  +N       +
Sbjct: 722 GIRLAEGYEVISMV------------------------LPTEDGKVLTVSENGYGKRTKV 757

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E   +    K    +  SE                R+GK + A            V VF
Sbjct: 758 DEYATKGRAGKGMIAMQTSE----------------RNGKVVGA------------VQVF 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEI 902
              D D+I+L+SD+GT++R  V+E+ ++ R T+GV +      E ++ VERI    + EI
Sbjct: 790 ---DGDEIMLISDQGTMVRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVERIESIADDEI 846

Query: 903 VDEAES 908
           VD AES
Sbjct: 847 VDTAES 852


>gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis]
 gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
          Length = 877

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/899 (43%), Positives = 552/899 (61%), Gaps = 84/899 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K AH LL 
Sbjct: 61  YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EVVDGC+ 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDR 263
            + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG +++R  +H E    G+R
Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG   +V+
Sbjct: 241 QAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EVV RRT + L KAR+R
Sbjct: 301 LNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS----- 438
            HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++  +D  +     
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGGVA 420

Query: 439 ----------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                     Y +  DG   LSE Q + IL +RL RLTGL +D I  E   +   I + L
Sbjct: 421 AFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLL 480

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           DIL+   R+  II +EL ++K E  T     RR  I     +++ ED I   DMVVT+SH
Sbjct: 481 DILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSH 540

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +L FS+ G VY  KVW
Sbjct: 541 GGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVW 600

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
            +P G+  +RGK ++N+  L  GE++T ++P   F ED       YV  AT  G V++  
Sbjct: 601 EVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDH------YVFMATSRGTVKKTP 654

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R   GRN+
Sbjct: 655 LSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPM-GRNA 713

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L +G  VI++                         L++GD             
Sbjct: 714 RGVRGMMLEEGQTVIAL-------------------------LVAGD------------- 735

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         + Q +LT +E G+GKRT   ++    R  KG+ A   S  N  G +
Sbjct: 736 --------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRN--GRV 779

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V    V  +D+I+L++  G L+R  V EIR   RAT+GV + S      +  V R+ ES
Sbjct: 780 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVES 838


>gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 868

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++++I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   +K 
Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRVKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +    GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/915 (42%), Positives = 558/915 (60%), Gaps = 84/915 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+  + NP   +D L+EII  PDFPTG +I G +G++  Y TGRG +++R  +H E 
Sbjct: 191 VDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IV+  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++D++   D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVRDMLSRADGD 430

Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                         + + +  DG   LS+ Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 TPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDIMS 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II  EL ++K E  T     RR+ I     +++ ED I   DM
Sbjct: 491 TIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDLITPTDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +L FS+ G V
Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLCFSNRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y  KVW +P G+  +RGK ++N+  L  GE+IT ++P   F ED       YV  AT  G
Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDH------YVFMATSRG 664

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R 
Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRP 724

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRG+ L +   VI++                         L++GD       
Sbjct: 725 M-GRNARGVRGMMLEETQTVIAL-------------------------LVAGD------- 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + Q +LT +E G+GKRT   ++    R  KG+ A   +  
Sbjct: 752 --------------------ETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQTTSR 791

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V    VN  D+I+L++  G L+R  V EIR   RAT+GV + +      +  V 
Sbjct: 792 N--GKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSTLSGVR 849

Query: 896 RIRESEIVDEAESTE 910
           R+ ES+  D+ E  E
Sbjct: 850 RVVESDADDDGELDE 864


>gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
 gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
          Length = 888

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/897 (43%), Positives = 553/897 (61%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 33  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 93  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 272

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 273 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 332

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 333 EVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYEL 392

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +  
Sbjct: 393 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETE 452

Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +   G                  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 453 NAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 512

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  +DMVV
Sbjct: 513 MAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVV 572

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 573 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 632

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++ 
Sbjct: 633 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKT 689

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 690 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 748

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L    QVI+M                         L++G             
Sbjct: 749 ARGVRGMQLDDAQQVIAM-------------------------LVAGS------------ 771

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 772 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 815 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 871


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +      DE+                                         
Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904
           ++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I         E  ++D
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818

Query: 905 EAEST 909
           E+E T
Sbjct: 819 ESEDT 823


>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 833

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/890 (44%), Positives = 559/890 (62%), Gaps = 94/890 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G E+NK Y K AR+
Sbjct: 9   SVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKPYKKSARV 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 69  VGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRYTEVRMAK 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +H LL D+ K+TVDF PNYD S  EP+VL  ++PN+LVNG  GIAVGMAT IP HNLGE
Sbjct: 129 LSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKIPPHNLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V++G V++ID+P +  + L++II GPDFPT   ILG   ++ AY TGRG I +R  + +E
Sbjct: 189 VINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFILGHEDVQEAYRTGRGIIQMRAKAMVE 248

Query: 258 ---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
              +TS  RE IV+ EIPYQVNKA ++EKIA L++EK+I  I+DLRDESDR G R+VI+L
Sbjct: 249 IDRRTS--RESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGMRIVIDL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LNQLY+ T++QS F + M+A+ G +P+  TL  +L  F+  R+E+V RR  
Sbjct: 307 KREAVAGVVLNQLYKMTAMQSSFGIIMLAIVGGQPKILTLREVLDQFIDHRKEIVTRRCV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA  RAH+L GL IA+ NLDE+++II+ S N + A+  L++R              
Sbjct: 367 FELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIER-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S++Q +AIL++RL RLTGL RD I NE N +  +I    +IL S 
Sbjct: 413 ------------FTFSDIQAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEILGSE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L II+ EL+ VK+  D PRRT I+    D+  ED IV EDMVVTVSH GY+KR  +S
Sbjct: 461 VEILKIIRAELIEVKENYDDPRRTEIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKRNAVS 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+QRRGGKG++G+  ++EDFV  LFI STH+ +L F+  G VY  KV  +P G   AR
Sbjct: 521 LYRSQRRGGKGKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAAR 580

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           GKA++N+L L   ER+ TI+P   F ED+      Y++ ATK+G V++ +L  +    + 
Sbjct: 581 GKAIVNLLQLAPEERVMTILPVKEFVEDK------YIIAATKNGVVKKTELMAYANPRQG 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G I+M +D  D +++        D+LL +  G+ +RF  + +R   GR + GVRG+ L  
Sbjct: 635 GIISMTIDEGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRPM-GRTARGVRGMQLEG 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D +I M +V                                   ND++           
Sbjct: 694 DDTIIGMEVV-----------------------------------NDNTSAS-------- 710

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +++V+E G+GKRT+  ++R+ +RSGKGI     S  N  G +V +  V D +
Sbjct: 711 --------LVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRN--GYVVDIKLVTDEE 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++ ++D+G ++R  V  + I  R T+GV +     DER+V+V ++ E E
Sbjct: 761 DLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVAKLAEKE 810


>gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 894

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/909 (43%), Positives = 559/909 (61%), Gaps = 65/909 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L+D+ K+TVDF PNYDGS +EP VL AR PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+VD C+ ++  P+  ++ LMEI+  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNEIVDACLHLLKVPEATIEELMEIVPAPDFPTAGIIYGLEGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V EIPYQVNK  +LE+IAELV EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L  F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPRLCNLKQLLDIFLEHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE +  I+ SP P  A+  LM ++W++S +++++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             ++S+               Y + +DG   LSE Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAEESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKIIGEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCI 533
             +  +I + LDIL+   R+  I+ +EL +++ E        RR+ I    L++  ED I
Sbjct: 486 REVMSQIADLLDILARPERVTAILVEELNALRQEFGQAKVGARRSVIERNALELGTEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              DMVVT+SH GY+K  PL+ YRAQRRGG+G+     +D+D++  LFI +TH  +L FS
Sbjct: 546 TPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWILCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFAT 652
             G VY  KVW +P GS  +RGK ++N+  L  GE+IT ++P   +  S+  + YV  +T
Sbjct: 606 DRGRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVFMST 665

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L +F    ++G IA+ LD  D ++        +D++L +  G+ VRF    
Sbjct: 666 ALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFDEDD 725

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GRN+ GVRG++L  G  VI+M                         L+S   +E 
Sbjct: 726 VRPM-GRNARGVRGMALEPGQNVIAM-------------------------LVSDRGDEA 759

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             +  DS+    +S             +LT +E GFGKRT   ++    R  KG+ A   
Sbjct: 760 RDVGEDST---RVS-------------VLTATENGFGKRTPIGEYTRHGRGTKGMIAIQQ 803

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + D+I+L++D+G L+R  V EIR   RAT+GV + +     ++ 
Sbjct: 804 SERN--GKVVAATLVRETDEIMLITDRGVLVRTRVAEIREMGRATQGVTLIALDDGAKLS 861

Query: 893 SVERIRESE 901
            ++RI E++
Sbjct: 862 GLQRIVEND 870


>gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 868

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  G
Sbjct: 489 LISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAAL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848


>gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
 gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
          Length = 868

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/895 (43%), Positives = 556/895 (62%), Gaps = 76/895 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+   G R
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKSEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G  VI++                         L++GD                  
Sbjct: 717 MQLDEGQNVIAL-------------------------LVAGD------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E
Sbjct: 783 VDQEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAE 837


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 566/905 (62%), Gaps = 94/905 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +      DE+                                         
Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904
           ++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I         E  ++D
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818

Query: 905 EAEST 909
           E E T
Sbjct: 819 EPEDT 823


>gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
 gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
          Length = 893

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/901 (43%), Positives = 570/901 (63%), Gaps = 72/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 38  KETLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 98  SARVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMRYTEI 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH +L DL K+TVDF PNYDG+ +EP++L  + PN+L+NG  GIAVGMATNIP H
Sbjct: 158 RMSRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D C+A++ NP+I ++ L+E+I GPDFPT A+I G TG+K  Y TGRG +++R  
Sbjct: 218 NLNEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIYGVTGVKEGYRTGRGRVIMRAR 277

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           +H E  +  G R+ IV+ E+PYQVNKA +L +I ELVR+K+I  I+DLRDESD+ G RVV
Sbjct: 278 THFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVV 337

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+R    +V+LN LY+ T +Q  F +NMVAL   +P    L  +L+AF+  R EVV R
Sbjct: 338 IELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVVTR 397

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ + L KAR+R HVL GLA+A++N+DEV+ +I+ +  P  A+  LM R W +  ++ ++
Sbjct: 398 RSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLVEQML 457

Query: 432 --DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               +D            Y +  DG  +LS+ Q +AILELRL RLTGL +D I +E   +
Sbjct: 458 ARAAVDAKQFRPEGLAPEYGLFDDG-YHLSDGQAQAILELRLQRLTGLEQDKIVSEYRDV 516

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  II +EL+++K +    RR+ IV    D+  ED I  ED+VV
Sbjct: 517 MERIADLLDILARPERITAIITEELVAMKQQFGDKRRSEIVINTQDLSMEDLIASEDVVV 576

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K  PL  YRAQ+RGG+G+     +D+DF+ +LFI +TH  +L FSS G VY 
Sbjct: 577 TLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILCFSSRGRVYW 636

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P G   +RG+ ++N++ L  GE+I  ++P    ++  +N YV  AT  G V++ 
Sbjct: 637 IKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPI---KTFDDNRYVFMATSLGTVKKT 693

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS+F +   SG IA+ LD  D ++ V     ++D++L +  G+ VRF  + +R   GR 
Sbjct: 694 PLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPM-GRG 752

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG++L KG +VIS                          L+  ++EE         
Sbjct: 753 ARGVRGMTLGKGQKVIS--------------------------LLVAESEE--------- 777

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +LT +E G+GKRT   ++    R  +G+ A   ++ N  G 
Sbjct: 778 -----------------QAVLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRN--GK 818

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V ++D+I+L++  G LIR  V E+R  SRAT+GV++ +  + E++  +ER+ E+
Sbjct: 819 VVGARLVREDDEIMLITTGGVLIRTRVKEVREMSRATQGVILINLDEGEKLAGLERVVET 878

Query: 901 E 901
           +
Sbjct: 879 D 879


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +      DE+                                         
Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904
           ++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I         E  ++D
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818

Query: 905 EAEST 909
           E+E T
Sbjct: 819 ESEDT 823


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +      DE+                                         
Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904
           ++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I         E  ++D
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818

Query: 905 EAEST 909
           E+E T
Sbjct: 819 ESEDT 823


>gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383]
 gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383]
          Length = 867

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/897 (43%), Positives = 554/897 (61%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A+ ELM + W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVREMLTRAESE 430

Query: 438 SYTIGS-----------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +   G                  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I +EL SVK E    RR++I     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147]
          Length = 866

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/896 (43%), Positives = 558/896 (62%), Gaps = 76/896 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G
Sbjct: 12  SLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  
Sbjct: 72  DVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIG 131

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVV
Sbjct: 132 HELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVV 191

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+ 
Sbjct: 192 DACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEI 251

Query: 260 S-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG 
Sbjct: 252 DRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGE 311

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L 
Sbjct: 312 VPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELR 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S +++++   +  +
Sbjct: 372 KARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETEN 431

Query: 439 YTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              G                  DG   LS+ Q + IL++RL RLTGL +D I  E   + 
Sbjct: 432 AAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVM 491

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT
Sbjct: 492 AQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSKIELNATELNTEDLITPQDMVVT 551

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  
Sbjct: 552 MSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWV 611

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV   T  G V++  
Sbjct: 612 KVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMTTALGTVKKTP 668

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR +
Sbjct: 669 LEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREA 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L +G QVI+M                         L++G              
Sbjct: 728 RGVRGMQLDEGQQVIAM-------------------------LVAGS------------- 749

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +
Sbjct: 750 --------------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRV 793

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 794 VAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849


>gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243]
 gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b]
 gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668]
 gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a]
 gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98]
 gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14]
 gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9]
 gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210]
 gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894]
 gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177]
 gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112]
 gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215]
 gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
 gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243]
 gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b]
 gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668]
 gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a]
 gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
          Length = 866

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLT 425

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             +  +   G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  
Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ 
Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G
Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R 
Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L    QVI+M                         L++G        
Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ 
Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++
Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847

Query: 896 RI 897
           +I
Sbjct: 848 QI 849


>gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37]
 gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37]
          Length = 898

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/901 (43%), Positives = 568/901 (63%), Gaps = 55/901 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK Y K A
Sbjct: 8   VSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK AH LL DL K+TVDF PNYDG+   P V+  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 QKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC+A+I++ DI +D L+E I GPDFPT  +I GR GI +AY TGRG I +R  + 
Sbjct: 188 GEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGIINGRKGIIDAYHTGRGKIKVRAKAD 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE IVV E+PYQVNKA ++EKIAE V++K+I  I+ LRDESD+ G R+V+E+
Sbjct: 248 IEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMRMVVEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   +V+LN LY  T +Q  F +N VAL+  +P+ F L  +L+AF+  R EVV RRT 
Sbjct: 308 KRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQPKLFNLKEMLEAFILHRREVVTRRTV 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL- 433
           + L KAR+RAH+L GLAI++AN++ ++ +IR S  P  A+  L  + WN   +  +++  
Sbjct: 368 FELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSAMLEAS 427

Query: 434 ------IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  D  +   G  D   +++EVQ +AIL+LRL +LTGL  + I  E   L   I  
Sbjct: 428 GVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELLEIIAA 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL +  RL+ +I++EL  +K     PRRT I     D+  ED I  ED+VVT+SH G
Sbjct: 488 LLFILENPERLMEVIREELEEIKANFADPRRTEITASETDLSIEDLITEEDVVVTLSHEG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   LS Y +QRRGGKG++   M+DEDF+  L + STH ++L FS+ G +Y  KV++L
Sbjct: 548 YVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTRGRLYWLKVFQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARG+ ++NIL L +GERIT I+P        ++ +V  AT +G V++  LS + 
Sbjct: 608 PLASRQARGRPIVNILPLEEGERITAILPV---RDYADDKFVFMATANGTVKKTALSAYS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   SG IA+ L+  +E++ V      N+I++ +  G+ VRF  +        N      
Sbjct: 665 RPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLDENG----- 719

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSL--KNDSS 780
                       A VL  + + + ++  ++ M      + G    + E++ SL   N++ 
Sbjct: 720 ------------APVLDEEGNPEIKVKGVRAMGRTATGVRGIKLKEGEKVVSLIIPNETG 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILT +E G+GKRT   D+   +R+ +G+ +  VS+ N  G 
Sbjct: 768 ------------------HILTTTENGYGKRTPLEDYSSKSRATQGVISIKVSERN--GK 807

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V+ ND+I+L++++GTL+R  V+E+ +  R T+GV +  TA+ E++V+++RI E 
Sbjct: 808 VVGAVQVDTNDEIMLITNRGTLVRTRVSEVSVVGRNTQGVTLIRTAEGEKIVALQRIEEI 867

Query: 901 E 901
           E
Sbjct: 868 E 868


>gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH]
          Length = 866

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/902 (43%), Positives = 558/902 (61%), Gaps = 76/902 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S +++++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLT 425

Query: 433 LID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  
Sbjct: 486 EYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITP 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ 
Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G
Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R 
Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L  G QVI+M                         L++G        
Sbjct: 723 M-GREARGVRGMQLDDGQQVIAM-------------------------LVAGS------- 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ 
Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++
Sbjct: 790 N--GRVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847

Query: 896 RI 897
           +I
Sbjct: 848 QI 849


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/882 (43%), Positives = 551/882 (62%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K + K A
Sbjct: 9   ILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDKPFKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+AA+YDAL RMAQD+S+R  LIEG GNFGS+DGDPPAA RYTE RL
Sbjct: 69  RTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E +DG + +ID+PD     LM++I+GPDFPTG +I+GR GI+ AY TGRG I IR  + 
Sbjct: 189 REAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIITIRAHAQ 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE ++  + +IVVTEIPY+V K+ ++EKIAELV+E+RI  I DLRDE+DR G RVVIEL 
Sbjct: 249 IETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELA 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ +VILNQLY++T +Q  + + ++AL   +P   TL  +L+ ++  +++V++RRT++
Sbjct: 309 RGANPNVILNQLYKFTPMQVSYGIILLALVDGQPRVLTLKQLLRHYLDHQKDVILRRTRH 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++D V+ +IR S   + AR  LM+                
Sbjct: 369 DLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  L+E Q +AIL++RL RLTGL R+ +  E   L  EI+    +L+S  
Sbjct: 413 ----------SFSLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEK 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L IIKQEL  ++D     RRT+IV G  D E ED I  ED+V+T++H GY+KR+P++ 
Sbjct: 463 MVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIKRMPVNT 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGG+G +G+  R+EDFV  LFI +TH ++LFF++ G VY  +V  +P     ARG
Sbjct: 523 YRSQRRGGRGVTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARG 582

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A++N++ + + E++T ++P   F ED        ++  T+ G V+R  L++F  I R G
Sbjct: 583 TAVVNLIEIERDEQVTAVIPVRDFGEDRD------LLMCTRRGVVKRTALAEFSHIRRGG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  DE+++VE      D+L+ T+LGQ +RFP++ +R   GR + GV GI L +G
Sbjct: 637 LIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTM-GRAARGVMGIRLDEG 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M                                                     E
Sbjct: 696 DEVVGM-----------------------------------------------------E 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  +L +++ GFGKRT   +FR   R GKGIRA  ++  N  G +     V   ++
Sbjct: 703 VADDEAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARN--GRVAGFEVVRPGEE 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L+S  G ++RVPV+++ +  RA +GV +      +RV +V
Sbjct: 761 VMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAV 802



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 19/203 (9%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VKR  L+ +   RRGG     + +   D +  + +      VL  + LG     +  R
Sbjct: 619 GVVKRTALAEFSHIRRGGL--IALALDPGDELVAVELTDGRGDVLVVTRLG-----QAIR 671

Query: 606 LPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            P+   +  G+A   ++   L++G+ +   M   +DE+     +++  T  G  +R  + 
Sbjct: 672 FPVAEVRTMGRAARGVMGIRLDEGDEVVG-MEVADDEA-----HLLVITDLGFGKRTPVR 725

Query: 664 DFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +F    R GK   A+ L +R+  +   E      +++L ++ G  +R P+  + V  GR 
Sbjct: 726 EFRAQGRGGKGIRAISLTARNGRVAGFEVVRPGEEVMLISQGGIVLRVPVDQVSV-QGRA 784

Query: 721 SVGVRGISLAKGDQVISMAIVLH 743
           + GV  + L  GD+V ++A V H
Sbjct: 785 AQGVTVMRLEPGDRVSAVATVAH 807


>gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264]
          Length = 866

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/902 (43%), Positives = 558/902 (61%), Gaps = 76/902 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S +++++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLT 425

Query: 433 LID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  
Sbjct: 486 EYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITP 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ 
Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G
Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R 
Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L  G QVI+M                         L++G        
Sbjct: 723 M-GREARGVRGMQLDDGQQVIAM-------------------------LVAGS------- 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ 
Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++
Sbjct: 790 N--GRVVAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847

Query: 896 RI 897
           +I
Sbjct: 848 QI 849


>gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CMR15]
          Length = 885

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/902 (43%), Positives = 574/902 (63%), Gaps = 71/902 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V+R  +H E 
Sbjct: 191 VDGCLHLLHNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAKTHFED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRTVFDL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM R+W++  +++++   +  
Sbjct: 371 RKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRAE-- 428

Query: 438 SYTIG----------------SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           S T+G                 +G +Y LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 429 SDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I  +D+VV
Sbjct: 489 MAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLVV 548

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G +Y 
Sbjct: 549 TLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYW 608

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRR 659
            KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + DE      +V  +T  G V++
Sbjct: 609 LKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMSTSKGTVKK 664

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R   GR
Sbjct: 665 TALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPM-GR 723

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L +G QVI+M +   A A+                         T+ + + 
Sbjct: 724 QARGVRGMNLEEGQQVIAMLV---APAE-------------------------TAGEGEQ 755

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V G+               +LT +E G+GKRT   ++    R  KG+ A   S+ N  G
Sbjct: 756 AVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN--G 798

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  ++R+ E
Sbjct: 799 KVVAAALVAAEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVE 858

Query: 900 SE 901
           S+
Sbjct: 859 SD 860


>gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1]
 gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
 gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1]
 gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
          Length = 888

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/897 (43%), Positives = 553/897 (61%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 33  TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 93  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 272

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 273 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 332

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 333 EVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYEL 392

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +  
Sbjct: 393 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETE 452

Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +   G                  DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 453 NAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 512

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  +DMVV
Sbjct: 513 MAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVV 572

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 573 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 632

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++ 
Sbjct: 633 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMTTALGTVKKT 689

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 690 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 748

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L    QVI+M                         L++G             
Sbjct: 749 ARGVRGMQLDDAQQVIAM-------------------------LVAGS------------ 771

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 772 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 815 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 871


>gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344]
 gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229]
 gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247]
 gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
 gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344]
 gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229]
 gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247]
 gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
          Length = 866

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLT 425

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             +  +   G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  
Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ 
Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G
Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMTTALG 662

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R 
Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L    QVI+M                         L++G        
Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ 
Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++
Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847

Query: 896 RI 897
           +I
Sbjct: 848 QI 849


>gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
 gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
          Length = 867

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/897 (43%), Positives = 557/897 (62%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849


>gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110]
 gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110]
          Length = 881

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/917 (42%), Positives = 563/917 (61%), Gaps = 89/917 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++ NP   +D LMEI+  PDFPT  +I G  G+++ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVRDGYRTGRGKVVMRAKCHFED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIEVFLQHRREVVTRRTVFTL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL---- 433
            KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSRAD 430

Query: 434 -----IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 DD         + +GSDG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
            EI + LDIL+   R+  II +EL ++K E        RR+ +     D+  ED I   D
Sbjct: 491 AEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGARRSLVEHSAYDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PL+ YRAQ+RGG+G+   V +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I   +        FP D+      YV  
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ------YVFM 664

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 665 ATSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GRN+ GVRG+SL  G  VI+M                         L++ D  
Sbjct: 725 EDVRPL-GRNARGVRGMSLDPGQGVIAM-------------------------LVAED-- 756

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                    ++Q +LT +E G+GKRTS  ++    R  KG+ A 
Sbjct: 757 -------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAI 791

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V+ +D+I+L++DKG L+R  V EIR   RAT+GV +    +  +
Sbjct: 792 QQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAK 849

Query: 891 VVSVERIRESEIVDEAE 907
           +  ++RI E++   E+E
Sbjct: 850 LSGLQRIVENDANGESE 866


>gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
 gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
          Length = 954

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/948 (42%), Positives = 575/948 (60%), Gaps = 112/948 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 25  KEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 85  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 145 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 205 NLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 264

Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G RVV
Sbjct: 265 ADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVV 324

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV R
Sbjct: 325 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREVVTR 384

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++ ++
Sbjct: 385 RTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEAMV 444

Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +            D  Y +  DG  +LS  Q +AIL+LRL RLTGL  + +  E   +  
Sbjct: 445 ERAGADACRPENLDPQYGL-RDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILT 503

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E + IL++  RL+ +I++EL  VK +    RRT I+E  LD+   D I  E+ VVT+
Sbjct: 504 QIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVVTI 563

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y+AQRRGG+G++   +++ED+V  L + ++HT++L FSS G VY  K
Sbjct: 564 SHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYWLK 623

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------------------- 636
            + +P  S  +RG+ L+N+L L++GERIT ++                            
Sbjct: 624 TYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVIEH 683

Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                         +DE +    Y+  AT  G V++  L  F +   SG IA+KL+  D 
Sbjct: 684 DDVDDVEGDDDSDEKDEPT--GAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 741

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R+  GRN+ GVRG+ L +G ++ISM I   
Sbjct: 742 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISMLI--- 797

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              + D +I                          +SV G                    
Sbjct: 798 --PEPDAQILT------------------------ASVRG-------------------- 811

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
               +GKRT+  +F    R G+G+ A   ++ N  G LV    V + ++I+L+SD+GTL+
Sbjct: 812 ----YGKRTAMEEFPRRGRGGQGVIAMVTNERN--GPLVGAVQVLEGEEIMLISDQGTLV 865

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDEAES 908
           R  V+E+    R T+GV +   +K E +V +ER++E    E++++ E+
Sbjct: 866 RTRVDEVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEA 913


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/924 (43%), Positives = 559/924 (60%), Gaps = 88/924 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L DL K TVDF PNYDGS +EP+V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E VD C+ ++ NP+  +D LMEII  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAGIIYGLNGVREGYRTGRGKVVMRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V EIPYQVNK  +LE++AELV EK++  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPKLCNLRDLVEVFLEHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD-LI 431
           T + L KAR+R HVL GLA+A+AN+DE + II+ SP P  A++ LM +SW++S +++ L+
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSLVREMLV 425

Query: 432 DLIDDSS--------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
               D+               Y + +DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKIIGEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCI 533
             +   I + LDILS   R+  II +EL++VK E        RR+ I   + ++  ED I
Sbjct: 486 KEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQELGTEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              DMVVT+SH GYVK  PL+ YRAQRRGG+G+     +D+D++  LFI +TH  +L FS
Sbjct: 546 TPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWMLCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646
           + G VY  KVW +P G   ARGK ++N+  L   E+IT ++P       FP D       
Sbjct: 606 NRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDH------ 659

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ V
Sbjct: 660 YIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAV 719

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF    +R   GRN+ GVRG++L  G  VI+M                         L++
Sbjct: 720 RFDEDDVRPM-GRNARGVRGMALEPGQNVIAM-------------------------LVA 753

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            D                           + Q +LT +E G+GKRTS  ++    R  KG
Sbjct: 754 ED---------------------------ESQSVLTATENGYGKRTSITEYTRHGRGTKG 786

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   ++ N  G +VA   V   D+I+L++D+G L+R  V+EIR   RAT+GV + S  
Sbjct: 787 MIAIQQTERN--GRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRATQGVTLISLD 844

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
              ++  ++RI E++   +A  TE
Sbjct: 845 DGSQLGGLQRIVENDAGSDAGDTE 868


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/882 (44%), Positives = 551/882 (62%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRILF M + G   +K + K A
Sbjct: 9   ILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDKPFKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+AA+YDAL RMAQD+S+R  LIEG GNFGS+DGDPPAA RYTE RL
Sbjct: 69  RTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E +DG + +ID PD     LM++I+GPDFPTG +I+GR GI+ AY TGRG I IR  + 
Sbjct: 189 REAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIITIRAHAQ 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  + +IVVTEIPY+V K+ ++EKIAELV+E+RI  I DLRDE+DR G RVVIEL 
Sbjct: 249 IETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELA 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ +VILNQLY++T +Q  + +  +AL   +P   TL  +L+ ++  +++V+VRRT++
Sbjct: 309 RGANPNVILNQLYKFTPMQVSYGIIQLALVDGQPRVLTLKQLLRHYLDHQKDVIVRRTRH 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++D V+ +IR S   + AR  LM+ ++N            
Sbjct: 369 DLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME-NFN------------ 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q +AIL++RL RLTGL R+ +  E   L  EI+    +L+S  
Sbjct: 416 -------------LTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEK 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L IIKQEL  ++D     RRT+IV G  + E ED I  ED+V+T++H GY+KR+P+  
Sbjct: 463 MVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDT 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGG+G +G+  R+EDFV+ LFI +TH ++LFF++ G VY  +V  +P  S  ARG
Sbjct: 523 YRSQRRGGRGITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARG 582

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A++N++ + Q E++T ++P   F ED        ++  T+ G V+R  L++F  I R G
Sbjct: 583 TAVVNLIEIGQDEQVTAVIPVRDFGEDRD------LLMCTRRGVVKRTALAEFGHIRRGG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  DE+++V+      D+LL T+ GQ +RFP++ +R   GR + GV GI L +G
Sbjct: 637 LIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTM-GRTARGVMGIRLEEG 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M                                                     E
Sbjct: 696 DEVVGM-----------------------------------------------------E 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  +L ++++G+GKRT   +FR   R GKGIRA  ++  N  G +     V   ++
Sbjct: 703 VADDEAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARN--GQVAGFEVVRPGEE 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L+S  G ++RVPV+++ I  RA +GV +      +RV +V
Sbjct: 761 VMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAV 802


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/910 (42%), Positives = 561/910 (61%), Gaps = 77/910 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 23  KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKK 82

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 83  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEI 142

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 143 RLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATNIPPH 202

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V+R  
Sbjct: 203 NLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVVMRAK 262

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G R+VI
Sbjct: 263 VHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVI 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 323 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREVVTRR 382

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++ 
Sbjct: 383 TVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLT 442

Query: 433 LIDDSSYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
              +    + +D                G   LS+ Q + IL++RL RLTGL +D I  E
Sbjct: 443 RTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAE 502

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDC 532
              +   I+  LDIL+  +R+  II +EL +++ E        RR+ I     D+  ED 
Sbjct: 503 YKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLSTEDL 562

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L F
Sbjct: 563 ITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 622

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   +  S+  + YV  A
Sbjct: 623 SNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVFMA 682

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    ++G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 683 TSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVRFDEN 742

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GRN+ GV+G+ L  G  VI+M                         L++ D   
Sbjct: 743 DVRPM-GRNARGVKGMQLEDGQSVIAM-------------------------LVAED--- 773

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   + Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 774 ------------------------ENQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 809

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +  ++
Sbjct: 810 QSERN--GRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAKL 867

Query: 892 VSVERIRESE 901
             ++RI E++
Sbjct: 868 SGLQRIVEND 877


>gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 884

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/910 (43%), Positives = 556/910 (61%), Gaps = 77/910 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ V+ +PD  +D +MEII  PDFPT  +I G  G+K  Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAR 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLT 425

Query: 433 LI---------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                      DD         Y +G DG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532
              +   I++ LDILS   R+  II  EL ++K E        RRT +     D+  ED 
Sbjct: 486 YKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L F
Sbjct: 546 ITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D  ++  + +V  A
Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVFMA 665

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  +
Sbjct: 666 TSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDEN 725

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G  VI+M                         L++ D   
Sbjct: 726 DVRPL-GRAARGVRGMMLEDGQSVIAM-------------------------LVAED--- 756

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   + Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 757 ------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQ 792

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  D+I+L++DKG L+R  V EIR   RAT+GV + +  +  ++
Sbjct: 793 QSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDEGAKL 850

Query: 892 VSVERIRESE 901
             ++RI E++
Sbjct: 851 SGLQRIVEND 860


>gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
 gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
          Length = 878

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/908 (43%), Positives = 567/908 (62%), Gaps = 84/908 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSWN  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           I LA+ D V+S+       AI+      Y +R    ++ +  R                 
Sbjct: 724 IKLAESDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSR----------------- 766

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + +G IS                               +++ R+G  + A  V   ++I 
Sbjct: 767 ATQGVIS------------------------------IKVTERNGSVVGAVQVEDTDQI- 795

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                         ++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  
Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839

Query: 900 SEIVDEAE 907
           +E VD+ E
Sbjct: 840 AEPVDDEE 847


>gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
 gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
          Length = 866

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLM 425

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             +  +   G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  
Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ 
Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G
Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMTTALG 662

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R 
Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L    QVI+M                         L++G        
Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ 
Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++
Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847

Query: 896 RI 897
           +I
Sbjct: 848 QI 849


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/891 (42%), Positives = 570/891 (63%), Gaps = 85/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I  ++I  EM+NSY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++G+  +K 
Sbjct: 3   EKRGNIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R +L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ KDTVD+RPN+D S +EP VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG V +IDN +  ++ LME I+GPDFPT A I+G  GIK AY TGRG I +
Sbjct: 183 PPHNLGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGTEGIKEAYTTGRGRIKV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ +  R+QI++TEIPYQVNKA ++EKIAELVR+K++  I+DLRDESDR+G R+
Sbjct: 243 RAKASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LN+LY++T L+  F V M+A+   +P+   L  +L  ++  +++++ 
Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGEPKVLNLKEVLTHYLDHQKDIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA +RAH+L GL IA+ NLDEV+++IR S N + A+  LM+           
Sbjct: 363 RRTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLME----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q +AIL++RL +LTGL  + +  E   L   I    +I
Sbjct: 412 ---------------TFTLSEKQAQAILDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++   +L IIK EL+ +K++    RRT I   + ++  ED I  E++V+T++H GY+KR
Sbjct: 457 LANERLMLNIIKDELIEIKEKYGDERRTEITRAIGEINIEDMITEEEVVITLTHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGGKG + +  R+EDFV +L   S+H  +LFF++ G VYK  V+ +P   
Sbjct: 517 LPADTYKSQKRGGKGIAALTTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEAR 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ L+  E +   +P       +++ Y+V ATK+G +++ +LS F    +
Sbjct: 577 RQAKGTAIVNLIPLSPNETVAATIPVGR---QFDSKYLVLATKNGIIKKTQLSQFESTRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ +   DE++ V+   ++++I+L T  G  +RF    +R   GR+++GV+GI+L+
Sbjct: 634 SGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRDM-GRSAMGVKGINLS 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+SM IV                                              E  
Sbjct: 693 PKDHVVSMEIV----------------------------------------------EEN 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L       L +SEKGFGKRT + ++R+  R GKGI+  +V+   + G LV    V D 
Sbjct: 707 KDL-------LVISEKGFGKRTDTSEYRLQTRGGKGIKTYNVT--GKTGPLVGAKIVTDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+++L+++ GT+IR+ V+ I    R TKGV +    +D+ ++++  +  +E
Sbjct: 758 DEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQSIITIALMASTE 808


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/886 (43%), Positives = 558/886 (62%), Gaps = 86/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GYV
Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E  +    LY+ F TKHG  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V        I++ TK G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M                                                  
Sbjct: 693 LTDDDVVVGM-------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E+  +E  +L V+EKG+GKRT + ++R  +R GKG++   +++ N  G LVAV    
Sbjct: 703 ---EILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + +++++  G LIR+ +N+I I  R T+GV +   A++E V +V
Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803


>gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK Y K A
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR  + 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247

Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           I +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+VIE+
Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+++RR+ 
Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  L    
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                        Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +IL + 
Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK  PLS
Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  S  AR
Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +   +G I
Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI + K D+
Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +                                   KN  S              
Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI+
Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I
Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820


>gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A
 gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A
           [imported] - Buchnera sp. (strain APS)
 gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK Y K A
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR  + 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247

Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           I +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+VIE+
Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+++RR+ 
Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  L    
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                        Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +IL + 
Sbjct: 424 -------AKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK  PLS
Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  S  AR
Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +   +G I
Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI + K D+
Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +                                   KN  S              
Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI+
Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I
Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/885 (43%), Positives = 560/885 (63%), Gaps = 86/885 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  +                                                     C +
Sbjct: 694 DVAV-----------------------------------------------------CMD 700

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           + ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 701 IAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKI 803


>gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523]
          Length = 862

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/904 (42%), Positives = 568/904 (62%), Gaps = 69/904 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R+Q
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQ 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDN ++ ++ L+  I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTIALIDNSELTIEDLIHYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QIVVTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I SD +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS  + L+ ++K+EL+ ++D     R++ I+E  LD+  ED I  E+MVVT+S  G
Sbjct: 489 LIGILSDVNELIRVVKEELVEIRDNYGDERKSEIIESRLDLTREDLIAEENMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  AT+ G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATRLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + +    +++SM +V + D                                         
Sbjct: 725 MRIHPDQKIVSM-LVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ + VD  
Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDD-VDNG 849

Query: 907 ESTE 910
           E  E
Sbjct: 850 EDIE 853


>gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
 gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/894 (44%), Positives = 550/894 (61%), Gaps = 67/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 12  VLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 72  RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP HN+
Sbjct: 132 SKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNM 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ GC+A +DN DI +D LM+ I GPDFPTGA+I GR GI  AY TGRG I +R  + 
Sbjct: 192 REVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRARAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +   S  ++ I+V EIPYQ+NKA ++E+IAELV+EK+I  I +LRDESD+ G RVVIEL+
Sbjct: 252 VVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDESDKDGLRVVIELR 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG   DV+LN LY  T+LQS+  +NMVAL   +P+   L  ++ AFV  R EVV RRT Y
Sbjct: 312 RGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQPKVLNLKEMIAAFVRHRREVVTRRTVY 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434
           LL KAR+R HVL GLA+A+AN+DEV+ +I+ SP    AR  L+  +W   D+  +++   
Sbjct: 372 LLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAWAPGDVNAMLERAG 431

Query: 435 ------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                 DD     G  +G  +LS  Q +AIL+LRL RLTGL  + +  E      EI + 
Sbjct: 432 AAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLLQEYADKLTEIADY 491

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           LDIL    RL  +I++EL     E    R T I +   D+  ED I  ED VVT+SH GY
Sbjct: 492 LDILEDSERLKRVIREELEETVAEFGDERMTEITDSAHDLTVEDLITEEDRVVTISHGGY 551

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K  PL+ Y+AQRRGG GRS   ++DEDFV  L I STH+++L FS+LG VY  +V+ +P
Sbjct: 552 AKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHSTILCFSNLGKVYWLRVFNIP 611

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  +RG+ ++N+L L+ GER+T+I+P    E      Y+  AT  G V++ +++ F +
Sbjct: 612 VASRNSRGRPMVNLLPLDDGERVTSILPV---EGYEAGSYIFMATAKGTVKKTEMTQFAR 668

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G  A++L+  D ++         D++L +  G+ VRF  +A+R   GR + GVRGI
Sbjct: 669 QRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFNEAAVRPM-GRTAKGVRGI 727

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L     +IS+ I                    Q R+++                  +SE
Sbjct: 728 RLGGDYSLISLIIP-----------------KQQGRILT------------------VSE 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                              G+GKR+ + DF +  R   G+ A   S  N  GALV    V
Sbjct: 753 ------------------NGYGKRSETADFPVRGRGTMGVIAMSTSDRN--GALVGAEQV 792

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            D D+I+L+S++GT +R  ++EI +  R T+GV +  T  +E +VS+ RI E +
Sbjct: 793 WDGDEIMLISNQGTAVRTRIDEISLQGRNTQGVRVIRTRDEESLVSISRIAEDD 846


>gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
 gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
          Length = 880

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/913 (43%), Positives = 561/913 (61%), Gaps = 77/913 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL DL K+TVDF PNYDGS +EP+VL  R PN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 131 AHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLRNPEASIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVVMRAKVHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  ++K F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPKLCNLKDLIKVFLQHRREVVTRRTVFNL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
            KAR+R HVL GLA+A+AN+DE + IIR +P P  A+ ELM + W++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKLVREMLTRTRAD 430

Query: 435 ------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 DD         Y +GSDG   LS+ Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
            EI++ LDIL+   R+  II +EL ++K E        RR+ +     D+  ED I   D
Sbjct: 491 GEIEDLLDILAKSERVSTIIYEELTAIKTEFGQTKLGARRSLVEHSSFDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++    ++ S+  + YV  AT  G 
Sbjct: 611 LYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQYVFMATSMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVRG+ L  G  VI+M                                      
Sbjct: 731 -GRNARGVRGMMLEDGQGVIAML------------------------------------- 752

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   ++E+  Q        +LT +  G+GKRTS  ++    R  KG+ A   S+ N
Sbjct: 753 --------VAEDELQS-------VLTATVNGYGKRTSITEYTRHGRGTKGMIAITQSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV +    +  ++  ++R
Sbjct: 798 --GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIGLDEGSKLSGLQR 855

Query: 897 IRESEIVDEAEST 909
           I E++    A+ T
Sbjct: 856 IVENDANPVADET 868


>gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK Y K A
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR  + 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247

Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           I +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+VIE+
Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+++RR+ 
Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  L    
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                        Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +IL + 
Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK  PLS
Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  S  AR
Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +   +G I
Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI + K D+
Sbjct: 654 AINLHTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +                                   KN  S              
Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI+
Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I
Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820


>gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS]
 gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS]
          Length = 881

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/917 (42%), Positives = 561/917 (61%), Gaps = 89/917 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++ NP   +D LMEI+  PDFPT  +I G  G+K+ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAKCHFED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLQHRREVVTRRTVFTL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----- 432
            KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSRAD 430

Query: 433 --LIDDSSY---------TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
             +I+   Y          +GSDG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
            EI + LDIL+   R+  II  EL ++K E        RR+ +     D+  ED I   D
Sbjct: 491 AEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGARRSLVEHSAFDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I   +        FP D+      YV  
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ------YVFM 664

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 665 STSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFAE 724

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GRN+ GVRG+SL  G  VI+M                         L++ D  
Sbjct: 725 DDVRPL-GRNARGVRGMSLDPGQGVIAM-------------------------LVAED-- 756

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                    ++Q +LT +E G+GKRTS  ++    R  KG+ A 
Sbjct: 757 -------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAI 791

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V+ +D+I+L++DKG L+R  V EIR   RAT+GV +    +  +
Sbjct: 792 QQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAK 849

Query: 891 VVSVERIRESEIVDEAE 907
           +  ++RI E++   E+E
Sbjct: 850 LSGLQRIVENDANGESE 866


>gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6]
 gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6]
          Length = 867

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/897 (43%), Positives = 556/897 (61%), Gaps = 76/897 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C  +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+
Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG
Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L
Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +  
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETE 430

Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                          + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +
Sbjct: 431 NASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVV
Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY 
Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++ 
Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR 
Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G QVI++                         L++G             
Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G 
Sbjct: 750 ---------------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+D+V+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +      DE+                                         
Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904
           ++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I         E  ++D
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818

Query: 905 EAEST 909
           E+E T
Sbjct: 819 ESEDT 823


>gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91]
          Length = 866

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E+   G R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S ++D++ 
Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLT 425

Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             +  +   G                  DG   LS+ Q + IL++RL RLTGL +D I  
Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  
Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ 
Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G
Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R 
Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L    QVI+M                         L++G        
Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ 
Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++
Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847

Query: 896 RI 897
           +I
Sbjct: 848 QI 849


>gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK Y K A
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR  + 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247

Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           I +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+VIE+
Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+++RR+ 
Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  L    
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                        Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +IL + 
Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKEILENP 476

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK  PLS
Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  S  AR
Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +   +G I
Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI + K D+
Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +                                   KN  S              
Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI+
Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I
Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/886 (43%), Positives = 558/886 (62%), Gaps = 86/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GYV
Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E  +    LY+ F TKHG  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V        I++ TK G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M                                                  
Sbjct: 693 LTDDDVVVGM-------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E+  +E  +L V+EKG+GKRT + ++R  +R GKG++   +++ N  G LVAV    
Sbjct: 703 ---EILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + +++++  G LIR+ +N+I I  R T+GV +   A++E V +V
Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803


>gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
 gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/918 (43%), Positives = 558/918 (60%), Gaps = 77/918 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ V+ +PD  +D +MEII  PDFPT  +I G  G+K  Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAR 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLT 425

Query: 433 LI---------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                      DD         Y +G DG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532
              +   I++ LDIL+   R+  II  EL ++K E        RRT +     D+  ED 
Sbjct: 486 YKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L F
Sbjct: 546 ITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D  ++  + +V  A
Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVFMA 665

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  +
Sbjct: 666 TSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKGVRFDEN 725

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G  VI+M                         L++ D   
Sbjct: 726 DVRPL-GRAARGVRGMMLEDGQSVIAM-------------------------LVAED--- 756

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   + Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 757 ------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQ 792

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  D+I+L++DKG L+R  V EIR   RAT+GV + +  +  ++
Sbjct: 793 QSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDEGAKL 850

Query: 892 VSVERIRESEIVDEAEST 909
             ++RI E++    A  T
Sbjct: 851 SGLQRIVENDANPPAADT 868


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/899 (43%), Positives = 553/899 (61%), Gaps = 78/899 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNLGEV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           V+GC+  + NP+  +D L+EII  PDFPTG +I G  G++  Y TGRG +++R  +H E 
Sbjct: 191 VEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIYGMVGVREGYRTGRGRVIMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IVV  IPYQVNK  + E+IAELV EK+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLISYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM R+W++S +++++   D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVREMLARADGD 430

Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                           + +  DG   LSE Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 VVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMD 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II +EL ++K E  +     RR+ I     +++ ED I   DM
Sbjct: 491 TIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDTEDLITPMDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +L FS+ G V
Sbjct: 551 VVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLCFSNRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KVW +P G+  +RGK ++N+  L  GE+IT ++P  E     ++ YV  AT  G V+
Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFS---DDHYVFMATSRGTVK 667

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R   G
Sbjct: 668 KTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPM-G 726

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ L     VI++                         L++GD          
Sbjct: 727 RAARGVRGMMLEDSQSVIAL-------------------------LVAGD---------- 751

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            + Q +LT +E G+GKRTS  ++    R  KG+ A   S  N  
Sbjct: 752 -----------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRN-- 792

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G +V    VN +D+I+L++  G L+R  V+EIR   RAT+GV + S      +  V R+
Sbjct: 793 GRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGSSLSGVRRV 851


>gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3]
 gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 851

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/891 (43%), Positives = 553/891 (62%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI+M                         L++G                   
Sbjct: 717 MQLEDGQQVIAM-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+E+R   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 833


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/905 (43%), Positives = 554/905 (61%), Gaps = 84/905 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+  + NP   +D LME+I  PDFPTG +I G +G++  Y TGRG +++R  +H E 
Sbjct: 191 VDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S +++++   D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRADGD 430

Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                         + + +  DG   LS+ Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 TPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDIMS 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II  EL ++K E  T     RR+ I     +++ ED I   DM
Sbjct: 491 TIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDLITPTDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +L FS+ G V
Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y  KVW +P G+  +RGK ++N+  L +GE+IT ++P   F ED       YV  AT  G
Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDH------YVFMATSRG 664

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R 
Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRG+ L     VI++                         L++GD       
Sbjct: 725 M-GRNARGVRGMMLEDTQTVIAL-------------------------LVAGD------- 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + Q +LT +E G+GKRT   ++    R  KG+ A   S  
Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + +      +  V 
Sbjct: 792 N--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDGSSLSGVR 849

Query: 896 RIRES 900
           R+ ES
Sbjct: 850 RVVES 854


>gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK Y K A
Sbjct: 8   IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR  + 
Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247

Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           I +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+VIE+
Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+++RR+ 
Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  L    
Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                        Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +IL + 
Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  +IK ELLS+++     RRT+I E   ++  ED I +ED+VVT+SH GYVK  PLS
Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSNINMEDLINQEDVVVTLSHSGYVKYQPLS 536

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  S  AR
Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +   +G I
Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI + K D+
Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +                                   KN  S              
Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI+
Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I
Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820


>gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113]
 gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113]
          Length = 846

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/894 (44%), Positives = 554/894 (61%), Gaps = 71/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   VFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  LI+GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYD S  EP VL AR PN+L NG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++ C+A+ID+P + +  LM  I GPDFPT  ++ G  GI+ AY TGRG IV+R  +H
Sbjct: 188 GELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIRGIQEAYLTGRGRIVMRARTH 247

Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E   G  +Q I+VTE+PY VNKA +LEKI  LV++K+IV I  LRDESD+ G R+V+EL
Sbjct: 248 VETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGMRMVVEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R    +V+LNQLY +T LQS+F +NMVAL   +P+   L   L+ F+  R+EVV RRT 
Sbjct: 308 RRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEVFLRHRQEVVTRRTM 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAHVL GLAIA+ N+D ++ +I+ S +P  AR  L+ R W    + D++   
Sbjct: 368 FELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVIDMLQRA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     +++Y +  DG   LS  Q +AILE+RL RLTGL +  I +E   + I I 
Sbjct: 428 GAASSPPEELEAAYGLQRDG-YRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQVIIFIS 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L+IL++  RL+ +I++EL+ + ++   PRRT I +  +D+  ED I  E++VVT+SH 
Sbjct: 487 ELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVVVTLSHS 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY +KV+ 
Sbjct: 547 GYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYWKKVYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP GS  ARGK  +N+L L +GERI T++   E E    + Y+   T  G V++  L+DF
Sbjct: 607 LPQGSRIARGKPFVNLLPLEEGERINTVLSIREFE---KDKYIFMVTALGVVKKTSLADF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   D+++  +    E +I+L +  G+ +RF    +R   GR + GV+
Sbjct: 664 SRPRSSGIIALDLREGDQLVGADLTDGEQEIMLFSSGGKVIRFSERDVRPL-GRTARGVK 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L    +VI++ I           + Y K  +                         I
Sbjct: 723 GMELPSKHRVIALIIAASGTILTATELGYGKRTA-------------------------I 757

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +E R Q                              R GKGI +   +  N  GA+V   
Sbjct: 758 AEYRLQ-----------------------------GRGGKGIISIRTTPRN--GAVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V   D+++L+S+ GTLIR PV+ I +  R T+GV + +  + ER+V +ERI E
Sbjct: 787 QVEKEDEVVLISNGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840


>gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 878

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/908 (44%), Positives = 566/908 (62%), Gaps = 84/908 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH G
Sbjct: 488 LLHILGSAERLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           I LA  D V+S+       AI+      Y +R    ++ +  R                 
Sbjct: 724 IKLAGEDSVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSR----------------- 766

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +G IS                               +++ R+G  + A  V   ++I 
Sbjct: 767 GTQGVIS------------------------------IKVTERNGSVVGAVQVDDADQI- 795

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                         ++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  
Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839

Query: 900 SEIVDEAE 907
           +E VD+ E
Sbjct: 840 AEPVDDEE 847


>gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43]
          Length = 850

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/891 (43%), Positives = 551/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +  +   G 
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420

Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                            DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    QVI+M                         L++G                   
Sbjct: 717 MQLDDAQQVIAM-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833


>gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
 gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
          Length = 879

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/908 (43%), Positives = 566/908 (62%), Gaps = 84/908 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIREQFGDARRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           I LA+ D V+S+       AI+      Y +R    ++ +  R                 
Sbjct: 724 IKLAEKDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSR----------------- 766

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + +G IS                               +++ R+G  + A  V   ++I 
Sbjct: 767 ATQGVIS------------------------------IKVTERNGSVVGAVQVEDTDQI- 795

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                         ++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  
Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839

Query: 900 SEIVDEAE 907
           +E VD+ E
Sbjct: 840 AEPVDDEE 847


>gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786]
          Length = 850

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/891 (43%), Positives = 554/891 (62%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442
            HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S +++++   +  +   G 
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAAGG 420

Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                            DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELNAVKVEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G QVI+M                         L++G                   
Sbjct: 717 MQLDEGQQVIAM-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833


>gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
 gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
          Length = 850

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/891 (43%), Positives = 549/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +  +   G 
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420

Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                            DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    QVI+M                         L++G                   
Sbjct: 717 MQLDDAQQVIAM-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833


>gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2]
          Length = 898

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/916 (42%), Positives = 564/916 (61%), Gaps = 80/916 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF PNYDGS QEP+VL +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+ ++ NP+  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  +++++      
Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVREMLTRTRTD 430

Query: 438 SYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              + +D                G   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVRED 537
             I++ LDIL+   R+  II +EL +VK E        RR+ +     D+  ED I   D
Sbjct: 491 SVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P       FPED       +V  
Sbjct: 611 MYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDH------FVFM 664

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 665 ATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GRN+ GVRG+++ +   VI+M +   A+AD                +++G   
Sbjct: 725 NDVRPM-GRNARGVRGMNIEEHQNVIAMLV---AEAD-----------DGTGNVVAG--- 766

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                      Q +LT +E G+GKRT+  ++    R  KG+ A 
Sbjct: 767 --------------------------SQSVLTATENGYGKRTAISEYTRHGRGTKGMIAI 800

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +  +  +
Sbjct: 801 QQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDEGAK 858

Query: 891 VVSVERIRESEIVDEA 906
           ++ ++RI E++  D A
Sbjct: 859 LIGLQRIVENDANDNA 874


>gi|118578454|ref|YP_899704.1| DNA gyrase, A subunit [Pelobacter propionicus DSM 2379]
 gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
          Length = 843

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/894 (43%), Positives = 568/894 (63%), Gaps = 61/894 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  M  +WNK Y K AR+
Sbjct: 10  AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A YD + RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL++
Sbjct: 70  VGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEIRLRQ 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +H LL DL K+TV   PNY+    EP VL +++PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 130 LSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPHNLGE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG +AVI+NPD+  + L+ +I GPDFPTGA I GR GI++AY TGRG I IR  +HIE
Sbjct: 190 VIDGIIAVINNPDLAHEELLALIPGPDFPTGATIYGRQGIRDAYTTGRGIIQIRAKAHIE 249

Query: 258 KT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +R+ I+VTE+PYQVNKA ++EKIAELV+EK+I  IA++RDESDR+G R+V+E+KR
Sbjct: 250 AAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIVVEVKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             + +V+LN LY+ T +Q+ F + ++A+   +P   +L  ++  F+  R EVV RRT + 
Sbjct: 310 DDNPEVLLNLLYKLTQMQTSFGIILLAIVHNRPRILSLREMIDCFIEHRAEVVTRRTNFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+  LD V+ +IR S  P  A++ LM+ ++  ++    ++L   
Sbjct: 370 LKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLARLEL--- 426

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
               +G D  ++LSE+Q +AILE+RL RLTGL RD I +E   +   I    +IL+S   
Sbjct: 427 -PRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILASDRE 485

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +  II  EL  ++D+    RR+ I +   D+  ED I+ E+MVVT+SH GY+KR  + +Y
Sbjct: 486 IFNIIISELTEIRDKFGDIRRSEISDTTPDISLEDTIMDEEMVVTISHTGYIKRSAVDLY 545

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R+QRRGGKG++G+  R+EDFV  LFI ST   +L F+  G +Y  KV+ +P G+   +GK
Sbjct: 546 RSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVYEIPEGNRTTKGK 605

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N++++   E+ITTI+P  E      + ++  AT++G V++  L ++  +   G IA+
Sbjct: 606 AVVNLVNVGMEEKITTILPVKE---FSEHTFLFMATRNGVVKKTPLIEYSNVRSGGIIAV 662

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D+++ V       D+ L ++ G+ +RF    +R   GR + GVRG++L + D VI
Sbjct: 663 NLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSM-GRVTRGVRGMNLNEDDHVI 721

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M IV H D                   + G T                           
Sbjct: 722 GMEIV-HND-------------------VVGST--------------------------- 734

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I TV E G+GKRT   ++R  +R GKGI     +  N  G++V V  V++++ ++++
Sbjct: 735 ---IFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN--GSVVNVMQVSNDNDLMVI 789

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +D G ++RVPV+   +  R T+GV + +T + E+VV+V R+ E E  DE E TE
Sbjct: 790 TDNGKILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVARLAEKEEDDENEGTE 843


>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
 gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
          Length = 820

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/897 (45%), Positives = 565/897 (62%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  ++I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL GM +MG+  N+ Y K A
Sbjct: 7   LGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRPYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GE+MG YHPHG++AIYD L RMAQ++++R +L++GQGN+GS+DGD  AA RYTE RL
Sbjct: 67  KIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TVDF PNYD S  EP+VL +R PN+LVNG GGIAVG ATNIPTHNL
Sbjct: 127 TKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNIPTHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++G + +++NP++ +  LM+ I GPDFPT   I G +GIK+AY TGRG + +R    
Sbjct: 187 GEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGTSGIKDAYETGRGLLTVRAKVA 246

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE     DRE++++TEIPYQVNK+ ++EKIA+L +E R+  I+D+RDESDR+G RVVIEL
Sbjct: 247 IETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR     V+LN LY+++ LQ+ F VNM+AL   +PE   L  IL+AFV  R EVVVRRT 
Sbjct: 307 KRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNNRPEVLNLKRILEAFVEHRREVVVRRTA 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA+ NLD V+ +IR S +P+ AR  LMQ+              
Sbjct: 367 YDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQ-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AILE+RL RLT L RD +  E   +   I+    +L S 
Sbjct: 413 ------------FRLSEIQANAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +  II+ EL  +K++    RRT+IV+   ++  ED I  E++VVT+SH GY+KR  ++
Sbjct: 461 ALVRKIIRDELTEIKEKYQDERRTKIVKEEAELTLEDLIAEEEVVVTISHAGYIKRNAVT 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YRAQRRGGKG+  + +++EDFV  LF  STH S+LFF+  G VY  KV  +P  S  A+
Sbjct: 521 LYRAQRRGGKGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAK 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKAL+N+L+L++ E++T  +P  E  +   + +V+  TK G +++ +LS +    + G I
Sbjct: 581 GKALVNLLALSKDEKVTATLPVKEYRA---DRFVIMGTKQGVIKKTELSAYSNPRQGGII 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD+ D+++ V+    + +ILL TK G  +RF    +R   GR + GVRGI+L  GD+
Sbjct: 638 ALSLDAGDKLIGVDLTDGQREILLGTKQGITIRFKEEDVRAM-GRTAHGVRGITLEPGDE 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M                               E IT    DS+              
Sbjct: 697 VIGM-------------------------------ETITP---DSTTA------------ 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ILTV+E G+GKRT   ++R+  R GKGI +   ++ N  G  V    V D D+I+
Sbjct: 711 -----ILTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERN--GPAVGFLQVRDEDEIM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERI--RESEIVDEAES 908
           L++ +G ++R  V++IR   R T+GV +     DE RVV+V R+  RE  + +E ES
Sbjct: 764 LMAAQGKVLRCKVDDIREIGRNTQGVRLLDMDGDEDRVVAVVRLVEREEGVPEEGES 820


>gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
 gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
          Length = 885

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/905 (43%), Positives = 556/905 (61%), Gaps = 77/905 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V+R   H E 
Sbjct: 191 VDACLHMLRNPETSIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAKCHFED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLIVVFLQHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
            KARDR HVL GLA+A+AN+D+ + IIR +P P  A+ ELM RSW++  +++++      
Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKLVREMLTRTRAD 430

Query: 435 ------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 DD         + +G DG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
             I++ LDIL+   R+  II +EL S+K E        RR+ I     D+  ED I   D
Sbjct: 491 AVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGARRSIIEYSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   D  S+  + +V   T  G 
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRFVFMGTSMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPL 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVRG+ L  G  VI+M                         L++ D        
Sbjct: 731 -GRAARGVRGMMLEDGQSVIAM-------------------------LVAED-------- 756

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              + Q +LT +E G+GKRTS  ++    R  KG+ A   S+ N
Sbjct: 757 -------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +  +  ++  ++R
Sbjct: 798 --GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIALDEGSKLSGLQR 855

Query: 897 IRESE 901
           I E++
Sbjct: 856 IVEND 860


>gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4]
 gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
          Length = 832

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/881 (45%), Positives = 550/881 (62%), Gaps = 83/881 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR+
Sbjct: 9   AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARV 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R+ +
Sbjct: 69  VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMYQ 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL DL K+TV+  PNYD S QEP+VL A++PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 129 LAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLSE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG +AVI NP +  + L+E+I GPDFPT   I GR GI +AY TGRG I +R  + IE
Sbjct: 189 VIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIYGREGIVSAYGTGRGIIQMRARAMIE 248

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +R+ IVVTEIPYQVNKA ++EKIAELVREK+I  I+DLRDESDR+G R+VIELK+
Sbjct: 249 THKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRIVIELKK 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R E+V RRT + 
Sbjct: 309 DENPQILLNHLYKQTQMQSSFGIIMLAIVNNRPRVLTLRETINYFIDHRREIVTRRTIFD 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM R                
Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSR---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AIL++RL RLTGL RD I  E   +   I    +IL+S + 
Sbjct: 413 ----------FGLSEIQAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETE 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L II  EL  +KD+    RRT IV    ++  ED IV EDMVVT+SH GY+KR  +++Y
Sbjct: 463 ILNIIVGELRELKDKFGDKRRTEIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG++G+  ++EDFV  LFI S+   ++FF+  G VY  KV+ +P      RGK
Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGK 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L+L+  E+IT I+P  E  +   + +++ AT++G V++  L ++      G IA+
Sbjct: 583 AIVNLLNLSTNEKITAILPVKEFTA---DKFIMMATRNGVVKKTPLLEYSHPRVGGIIAV 639

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  D++++V       D+LL +K G+ +RF  S +R   GR S GVRG++L   D VI
Sbjct: 640 NLDEGDKLITVALTDGRQDVLLASKNGKSIRFKESDVRT-VGRVSRGVRGMTLEDDDVVI 698

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M I+                            E  T    DS+                
Sbjct: 699 GMEIL---------------------------NENFT----DST---------------- 711

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              + TV+E GFGKRT   ++R  +R GKG+     ++ N  G +V +  V D + ++L+
Sbjct: 712 ---LFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERN--GCVVDIKQVTDENDLMLI 766

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D+G ++RVPV    I  R T+GV +  T  +ER+V+V R+
Sbjct: 767 TDQGKILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVARL 807


>gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 864

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/895 (42%), Positives = 565/895 (63%), Gaps = 68/895 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R+Q
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQ 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDN  + ++ L++ I  PDFPTG+ I G  GI  AY TGRG +++R  + I
Sbjct: 189 EVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QIV+TEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I +D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS  S L+ ++K+EL+ ++D     R++ I+   LD+  ED I  EDMVVT+S  G
Sbjct: 489 LIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L++ ERIT +MP  E    W   YV  +TK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHDNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V++++ I++++D GTL+R   +++R   R+ +GV + +   +E+++S++ +++ +
Sbjct: 791 VDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 18/214 (8%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   + LG VK+V LS +   R  GK   G  + D D ++ + +   +  ++ FS  G  
Sbjct: 647 VFMSTKLGRVKKVDLSEFARPRSTGKIAIG--LNDGDELSYVALTDGNKQIMMFSDAG-- 702

Query: 599 YKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              K  R      +A G++   +  + L+  ++I +++    DE       V+ AT++G 
Sbjct: 703 ---KAIRFDESDVRAMGRSAAGVTGMRLHDNQKIVSVIVTNPDEG-----VVLAATENGY 754

Query: 657 VRRNKLSDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S++ +  R+  G IA+    R+ +++       + DI++ T  G  VR     +
Sbjct: 755 GKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQV 814

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           R   GR++ GVR I+L   +++IS+ +V   D +
Sbjct: 815 RE-CGRSAQGVRLINLRNNEKLISLKVVKQEDEE 847


>gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris]
          Length = 899

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/909 (44%), Positives = 582/909 (64%), Gaps = 37/909 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR L+++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D +  +G S+G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LAKG++V+S+ +   A    DE    ++  SA+  + + D  E   +  D +  
Sbjct: 719 GVRGIRLAKGEEVVSLIVSERAGGVEDE----VEDESAEEVVETTDGAEPAVI--DVADN 772

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G+++            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 773 GDVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGSTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLE 878

Query: 901 ---EIVDEA 906
              ++VDEA
Sbjct: 879 EPEDVVDEA 887


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/902 (43%), Positives = 552/902 (61%), Gaps = 84/902 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+  + NP   +D LMEII  PDFPTG VI G +G++  Y TGRG +++R  +H E 
Sbjct: 191 VDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIYGMSGVREGYRTGRGRVIMRAKTHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREVVTRRTVFQL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S +++++   D  
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRADGD 430

Query: 438 S---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +               + +  DG   LS+ Q + IL +RL RLTGL +D I  E   +  
Sbjct: 431 TPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDIMS 490

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538
            I + LDIL+   R+  II +EL ++K E  T     RR+ I     +++ ED I   DM
Sbjct: 491 TIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDLITPTDM 550

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +L FS+ G V
Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRV 610

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y  KVW +P G+  +RGK ++N+  L +GE+IT ++P   F ED       YV  AT  G
Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDH------YVFMATSRG 664

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R 
Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRG+ L     VI++                         L++GD       
Sbjct: 725 M-GRNARGVRGMMLEDTQNVIAL-------------------------LVAGD------- 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + Q +LT +E G+GKRT   ++    R  KG+ A   S  
Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V    V  +D+I+L++  G L+R  V EIR   RAT+GV + +      +  V 
Sbjct: 792 N--GKVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSSLSGVR 849

Query: 896 RI 897
           R+
Sbjct: 850 RV 851


>gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 878

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/901 (44%), Positives = 564/901 (62%), Gaps = 70/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSAERLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA  D V+S+ I     A     I  +      +R   G+             +G IS
Sbjct: 724 IKLAGEDSVVSLIIPRGEGA-----ILTVTQNGYGKRTAEGEYP-----TKSRGTQGVIS 773

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                          +++ R+G  + A  V   ++I        
Sbjct: 774 ------------------------------IKVTERNGSVVGAVQVDDADQI-------- 795

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
                  ++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 796 -------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846

Query: 907 E 907
           E
Sbjct: 847 E 847


>gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
 gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
          Length = 908

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/914 (43%), Positives = 567/914 (62%), Gaps = 90/914 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A+IDN ++  + ++E I GPDFPT  +I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRAR 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + I+  +T+G +E I+V E+PYQVNKA ++EK+AELV++KR+  I+ LRDESD+ G R+V
Sbjct: 246 ASIDVHETTG-KETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KRG   +V+LN LY+ T +Q  F +NMVAL   +P+ F +  +L+AFV  R EVV R
Sbjct: 305 IEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KARDRAH+L GL+IA+AN+D ++ +I+ S N + +  +L+ + W   ++ +++
Sbjct: 365 RTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANML 424

Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
               + +         Y I  DG  YL+  Q +AI++L+L +L+G+  D I +E  +L  
Sbjct: 425 SEAGNDAARPEWLEPEYGI-RDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLD 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E + IL++ +RL+ +I +EL++++DE    RRT I     D+  ED I  ED+VVT+
Sbjct: 484 LIAELMHILATPARLMEVICEELVAIRDEFGDERRTEITNASHDLSLEDLITEEDVVVTL 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FS  G +Y  K
Sbjct: 544 SHEGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLYWLK 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP+ S  ARG+ ++NIL L   ERIT I+P        ++ Y+V AT  G V++ +L
Sbjct: 604 VFQLPLASRTARGRPIVNILPLESDERITAILPV---RDYADDKYIVMATASGTVKKTRL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF-------------- 708
             +     +G IA+ L   D ++ V+     ND++L +  G+ VRF              
Sbjct: 661 DAYSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSETGEIKL 720

Query: 709 -PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            P +  + +A    GR   GVRGI L    +V+S+ I                       
Sbjct: 721 DPETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLIIP---------------------- 758

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                       KND                     ILT++E GFGKRT   ++   +R+
Sbjct: 759 ------------KNDGP-------------------ILTITENGFGKRTDLAEYPAKSRA 787

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            KG+ +  VS+ N  G +V    V D D+I+L++D GTL+R  VNE+ +  R T+GV + 
Sbjct: 788 TKGVVSIKVSERN--GKVVGAVQVEDLDEIMLITDSGTLVRTRVNEVSVIGRNTQGVRLI 845

Query: 884 STAKDERVVSVERI 897
            TA DE VV+++RI
Sbjct: 846 RTADDEHVVALQRI 859



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 15/132 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EIT+  +D S+E  I+EE           ++T+S +G+ K     D+    R GKG  AT
Sbjct: 520 EITNASHDLSLEDLITEE---------DVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAAT 570

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887
              K+ E   +  +   N +D I+  SD+G L  + V ++ +ASR  +G   V I     
Sbjct: 571 ---KMKEEDFIERLLVANTHDTILCFSDRGKLYWLKVFQLPLASRTARGRPIVNILPLES 627

Query: 888 DERVVSVERIRE 899
           DER+ ++  +R+
Sbjct: 628 DERITAILPVRD 639


>gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 851

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/891 (43%), Positives = 553/891 (62%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI++                         L++G                   
Sbjct: 717 MQLEDGQQVIAL-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/893 (43%), Positives = 565/893 (63%), Gaps = 88/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I    I+ EM++SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 4   EENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPDKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 64  YRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGMAT+I
Sbjct: 124 TEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMATSI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE +D  V +IDNPD D+D LM+ I+GPDFPTGA+I+G+  I  AY TGRG + +
Sbjct: 184 PPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIMGKDSIAEAYRTGRGKVKV 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIVVTEIPYQVNKA ++E+IAELV++KRI  I+DLRDES+R G R+
Sbjct: 244 RSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGMRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A+++LN LY+++ L+  FS+ M++L    P    L  IL  +V  +++VV 
Sbjct: 304 VIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNGVPRILNLKQILHYYVEHQKDVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA+ RAH+L GL IA+  +DEV+ +IR S N + A+  LM +          
Sbjct: 364 RRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDK---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL +LTGL R+ +  E N L  +I+    I
Sbjct: 414 ----------------FKLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LLG+IK E+L +K +    RRT I   EG +D+  +D I  E++ +T++H GY+
Sbjct: 458 LADEQLLLGVIKDEILEIKKKYSDARRTEIRHAEGEIDI--KDLIDDEEITITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++QRRGG+G S + +R+EDFV  L    TH  +LFF++ G V++   + +P 
Sbjct: 516 KRLPLDTYKSQRRGGRGISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L   E+I T++    D  + ++ Y++ ATK G V++ K S+F  I
Sbjct: 576 GKRQAKGTAIVNLLQLGPNEKIATLIEV--DGRADDDSYLLLATKKGIVKKTKRSEFKNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ V+T   E D+LL T  G  +RF    IR   GR ++GV+GI+
Sbjct: 634 NKSGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRPM-GRTAMGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++GD+V+SM++                                       S EG     
Sbjct: 693 LSEGDKVVSMSL---------------------------------------SDEG----- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + +L VS+ G+GKRT   ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 709 ---------EDLLVVSQNGYGKRTDINEYRSQIRAGKGIKTYNMSE--KTGEIVGATMVN 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + D+++L++  G LIR+ V++I +  R T GV +  T  +  VVS+ +I   E
Sbjct: 758 NEDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKTDDEVNVVSIAKIDTEE 810


>gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895]
          Length = 878

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/901 (44%), Positives = 564/901 (62%), Gaps = 70/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 KEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA  D V+S+ I     A     I  +      +R   G+             +G IS
Sbjct: 724 IKLAGEDSVVSLIIPRGEGA-----ILTVTQNGYGKRTAEGEYP-----TKSRGTQGVIS 773

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                          +++ R+G  + A  V   ++I        
Sbjct: 774 ------------------------------IKVTERNGSVVGAVQVDDADQI-------- 795

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
                  ++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 796 -------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846

Query: 907 E 907
           E
Sbjct: 847 E 847


>gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
 gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
          Length = 850

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +   G   +G  YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   
Sbjct: 439 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS 
Sbjct: 498 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG
Sbjct: 558 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 617

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA
Sbjct: 618 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 674

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     V
Sbjct: 675 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 733

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I++ +V                                        +GN           
Sbjct: 734 IALIVV--------------------------------------KPKGN----------- 744

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L
Sbjct: 745 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 798

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E
Sbjct: 799 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 847


>gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY]
 gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY]
          Length = 877

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/909 (43%), Positives = 558/909 (61%), Gaps = 89/909 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++  PD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAKCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  ++K F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIKVFLQHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----- 432
            KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTRAD 430

Query: 433 --LIDDSSY-------TIG-SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
             +++   Y         G  DG +Y LS+ Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
             I++ LDIL+  +R+  II +EL +++ E        RR+ I     D+  ED I   D
Sbjct: 491 SVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P       FP D       YV  
Sbjct: 611 LYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADH------YVFM 664

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 665 ATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDE 724

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GVRG+ L  G  VI+M                         L++ D  
Sbjct: 725 NDVRPL-GRQARGVRGMMLEDGQSVIAM-------------------------LVAED-- 756

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                    + Q +LT +E G+GKRTS  ++    R  KG+ A 
Sbjct: 757 -------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAI 791

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +  +
Sbjct: 792 QQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAK 849

Query: 891 VVSVERIRE 899
           +  ++RI E
Sbjct: 850 LSGLQRIVE 858


>gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15]
          Length = 873

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/904 (44%), Positives = 566/904 (62%), Gaps = 81/904 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRIYIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             IE     +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G RVVI
Sbjct: 246 HEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG + DV++N L+  T L+++F +NMV L   +P+   L  +L AFV  R EVV RR
Sbjct: 306 ELRRGENPDVVVNNLFAQTQLETVFGINMVGLINGEPKTLNLKQLLDAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+   A+ +L+ + W+  D+  +++
Sbjct: 366 TIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMAMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD     G  +G  +LS  Q +AIL+LRL RLTGL  + ++NE   +  +I
Sbjct: 426 RAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEILDKI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL    RLL +I++EL ++  E    RRT I     D+   D I  ED+VVT+SH
Sbjct: 486 ADLLDILGDPERLLQVIREELEAIVTEFGDERRTEITSSRRDLTIADLIDEEDLVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  +V+
Sbjct: 546 SGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWLRVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
            +P  S  +RG+ ++NIL L++GERITT +P   +PED+      +V+ AT  G V++  
Sbjct: 606 EIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQ------FVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++       + +++L +  G+ VRF           N 
Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRF-----------NE 708

Query: 722 VGVRGIS-LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL--KND 778
             VR +S  A+G + I M    H                            + SL    D
Sbjct: 709 EAVRPMSRTARGVRGIKMPQGHH----------------------------VVSLIIPQD 740

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V                  ILT SE G+GKRT+  +F   +R  +G+ A   S+ N  
Sbjct: 741 GGV------------------ILTASENGYGKRTAIDEFPTYSRGSQGVIAMQCSERN-- 780

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERI 897
           G LV    + D D+++L+SDKGTL+R   +E+ + SR T+GV +I  + +DER+V VERI
Sbjct: 781 GNLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERI 840

Query: 898 RESE 901
            E++
Sbjct: 841 AETD 844


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/873 (44%), Positives = 551/873 (63%), Gaps = 86/873 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K Y K ARI GEV+G
Sbjct: 17  EMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIG 76

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD  AA RYTE RL K A  +L
Sbjct: 77  KYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEML 136

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+TVDF PNYDG   EPVVL ARYPN+LVNG GGIAVGMATNIP HNLGEV+DG  
Sbjct: 137 RDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQ 196

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A+I+NPDI    LM+ I+GPDFPT   ILGR+GI+ AY TGRGS+ +R  + IE+  G++
Sbjct: 197 ALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAKTTIEEI-GNK 255

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            +I+V E+PYQVNKA ++EKIAELVR+KRI  I DLRDESDR G RVVIEL+R  + +V+
Sbjct: 256 ARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVVIELRRDVNPNVV 315

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN L+++T++QS F +NM+A+   +P+   L  +L  ++  + EV+ RRT++ L KA  R
Sbjct: 316 LNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVIRRRTEFDLKKAEAR 375

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL IA+ +LDEV+ +IR S   E AR  L++R                       
Sbjct: 376 AHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIER----------------------- 412

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L+  Q++AIL++RL RLTGL R+ I NE N L  +I E  +IL++   +L II +
Sbjct: 413 ---FSLTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYREILANEHLVLNIISE 469

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  +K+     RRT I  G   + DED I RED+++TV+H GY+KR+P++ YR+Q+RGG
Sbjct: 470 ELNELKERFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGG 529

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+  +DEDFV  LFI ++H  +LFF+  G VY+ K + +P  S  ARG  +IN++ 
Sbjct: 530 RGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQ 589

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           + QGE I  ++P    E    + Y+ FAT+HG +++  L D+  I + G IA+ L   D 
Sbjct: 590 IEQGESINAVIPI---EEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++ V+    + ++++ T  G  +RFP S +R   GR++ GV+GI+L + D VI M IV  
Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGINLDESDAVIGMDIV-- 703

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                             D+S++                 IL V
Sbjct: 704 ----------------------------------DTSLD-----------------ILIV 712

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG+GKRT   D+RI +R GKGI+  +V+  N  G +V +  V   + +++++  GTLI
Sbjct: 713 TAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKN--GPVVGLKVVKTEEDLMIITASGTLI 770

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           R  + EI    R T+GV + +   D+ V +V R
Sbjct: 771 RTSMGEISTMGRNTQGVRLINIRDDDSVATVCR 803


>gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
 gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
          Length = 850

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +   G   +G  YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   
Sbjct: 439 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS 
Sbjct: 498 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG
Sbjct: 558 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 617

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA
Sbjct: 618 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 674

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     V
Sbjct: 675 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 733

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I++ +V                                        +GN           
Sbjct: 734 IALIVV--------------------------------------KPKGN----------- 744

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L
Sbjct: 745 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 798

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E
Sbjct: 799 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 847


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/911 (42%), Positives = 557/911 (61%), Gaps = 89/911 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 22  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 81

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 82  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 141

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 142 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 201

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++  PD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 202 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAKCHFED 261

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G R+VIELKRG
Sbjct: 262 IDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKRG 321

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT + L
Sbjct: 322 EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIEVFLQHRREVVTRRTVFEL 381

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++      
Sbjct: 382 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTRAD 441

Query: 438 SYTIGSD---------------GTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              + +D               G +Y LS+ Q + IL++RL RLTGL +D I  E   + 
Sbjct: 442 GGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKDVM 501

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
             I++ LDIL+  +R+  II +EL +++ E        RR+ I     D+  ED I   D
Sbjct: 502 SVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLSTEDLITPTD 561

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 562 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILCFSNRGR 621

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P       FP D       YV  
Sbjct: 622 LYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADH------YVFM 675

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 676 ATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDE 735

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GVRG+ L  G  VI+M                         L++ D  
Sbjct: 736 NDVRPL-GRQARGVRGMMLEDGQSVIAM-------------------------LVAED-- 767

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                    + Q +LT +E G+GKRTS  ++    R  KG+ A 
Sbjct: 768 -------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAI 802

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +  +
Sbjct: 803 QQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAK 860

Query: 891 VVSVERIRESE 901
           +  ++RI E++
Sbjct: 861 LSGLQRIVEND 871


>gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 864

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/895 (42%), Positives = 564/895 (63%), Gaps = 68/895 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR
Sbjct: 9   SSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R+Q
Sbjct: 69  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQ 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K  H LL D+ K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HN+ 
Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A+IDN  + ++ L++ I  PDFPTG+ I G  GI  AY TGRG +++R    I
Sbjct: 189 EVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKVDI 248

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +  + QIV+TEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LK
Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT +
Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D
Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGVD 428

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     S Y I +D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK 
Sbjct: 429 VKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKY 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + ILS  S L+ ++K+EL+ ++D     R++ I+   LD+  ED I  EDMVVT+S  G
Sbjct: 489 LIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMDG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  
Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ++G+ + NIL L++ ERIT +MP  E    W   YV  +TK G V++  LS+F 
Sbjct: 609 PVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVDLSEFA 665

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G
Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    +++S+ IV + D                                         
Sbjct: 725 MRLHDNQKIVSV-IVTNPD----------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    
Sbjct: 743 ----------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V++++ I++++D GTL+R   +++R   R+ +GV + +   +E+++S++ +++ +
Sbjct: 791 VDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 18/214 (8%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   + LG VK+V LS +   R  GK   G  + D D ++ + +   +  ++ FS  G  
Sbjct: 647 VFMSTKLGRVKKVDLSEFARPRSTGKIAIG--LNDGDELSYVALTDGNKQIMMFSDAG-- 702

Query: 599 YKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              K  R      +A G++   +  + L+  ++I +++    DE       V+ AT++G 
Sbjct: 703 ---KAIRFDESDVRAMGRSAAGVTGMRLHDNQKIVSVIVTNPDEG-----VVLAATENGY 754

Query: 657 VRRNKLSDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S++ +  R+  G IA+    R+ +++       + DI++ T  G  VR     +
Sbjct: 755 GKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQV 814

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           R   GR++ GVR I+L   +++IS+ +V   D +
Sbjct: 815 RE-CGRSAQGVRLINLRNNEKLISLKVVKQEDEE 847


>gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
 gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
          Length = 848

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPDDL 436

Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +   G   +G  YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   
Sbjct: 437 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 495

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS 
Sbjct: 496 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 555

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG
Sbjct: 556 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 615

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA
Sbjct: 616 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 672

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     V
Sbjct: 673 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I++ +V                                        +GN           
Sbjct: 732 IALIVV--------------------------------------KPKGN----------- 742

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L
Sbjct: 743 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 796

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E
Sbjct: 797 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 845


>gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44]
 gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44]
          Length = 898

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/916 (42%), Positives = 563/916 (61%), Gaps = 80/916 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+ ++ NP+  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  +++++      
Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVREMLTRTRTD 430

Query: 438 SYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              + +D                G   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVRED 537
             I++ LDIL+   R+  II +EL +VK E        RR+ +     D+  ED I   D
Sbjct: 491 SVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P       FPED       +V  
Sbjct: 611 MYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDH------FVFM 664

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 665 ATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GRN+ GVRG+++ +   VI+M +   A+AD                +++G   
Sbjct: 725 NDVRPM-GRNARGVRGMNIEEHQNVIAMLV---AEAD-----------DGTGNVVAG--- 766

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                      Q +LT +E G+GKRT+  ++    R  KG+ A 
Sbjct: 767 --------------------------SQSVLTATENGYGKRTAISEYTRHGRGTKGMIAI 800

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +  +  +
Sbjct: 801 QQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDEGAK 858

Query: 891 VVSVERIRESEIVDEA 906
           ++ ++RI E++  D A
Sbjct: 859 LIGLQRIVENDANDNA 874


>gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
 gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
          Length = 898

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/916 (42%), Positives = 561/916 (61%), Gaps = 80/916 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDGC+ ++ NPD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 191 VDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT + L
Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREVVTRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  +++++      
Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVREMLTRTRTD 430

Query: 438 SYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              + +D                G   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDIM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVRED 537
             I++ LDIL+   R+  II +EL +VK E        RR+ +     D+  ED I   D
Sbjct: 491 SVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDYLLCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650
           +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P       FPED       YV  
Sbjct: 611 MYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRSFPEDH------YVFM 664

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  
Sbjct: 665 ATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GRN+ GVRG+++ +   VI+M +   A+AD                +++G   
Sbjct: 725 NDVRPM-GRNARGVRGMNIEEHQNVIAMLV---AEAD-----------DGTGNVVAG--- 766

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                      Q +LT +E G+GKRT+  ++    R  KG+ A 
Sbjct: 767 --------------------------SQSVLTATENGYGKRTAISEYTRHGRGTKGMIAI 800

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +     +
Sbjct: 801 QQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDAGAK 858

Query: 891 VVSVERIRESEIVDEA 906
           ++ ++RI E++  D A
Sbjct: 859 LIGLQRIVENDANDGA 874


>gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
 gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
          Length = 848

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 436

Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +   G   +G  YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   
Sbjct: 437 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 495

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS 
Sbjct: 496 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 555

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG
Sbjct: 556 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 615

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA
Sbjct: 616 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 672

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     V
Sbjct: 673 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I++ +V                                        +GN           
Sbjct: 732 IALIVV--------------------------------------KPKGN----------- 742

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L
Sbjct: 743 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 796

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E
Sbjct: 797 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 845


>gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4]
          Length = 850

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/891 (43%), Positives = 553/891 (62%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ +  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+   G R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI+M                         L++G                   
Sbjct: 717 MQLDDGQQVIAM-------------------------LVAGS------------------ 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/873 (44%), Positives = 548/873 (62%), Gaps = 86/873 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K Y K ARI GEV+G
Sbjct: 17  EMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIG 76

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD  AA RYTE RL K A  +L
Sbjct: 77  KYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEML 136

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+TVDF PNYDG   EPVVL ARYPN+LVNG GGIAVGMATNIP HNLGEV+DG  
Sbjct: 137 RDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQ 196

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A+I+NPDI    LM+ I+GPDFPT   ILGR+GI+ AY TGRGS+ +R  + IE+  G++
Sbjct: 197 ALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAKTTIEEI-GNK 255

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            +I+V E+PYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R+VIEL+R  + +V+
Sbjct: 256 ARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRIVIELRRDVNPNVV 315

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN L+++T++QS F +NM+A+   +P+   L  +L  ++  + EV+ RRT++ L KA  R
Sbjct: 316 LNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEVIRRRTEFDLKKAEAR 375

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL IA+ +LDEV+ +IR S   E AR  L++R                       
Sbjct: 376 AHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIER----------------------- 412

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L+  Q +AIL++RL RLTGL R+ I NE N L  +I E  +IL++   +L II +
Sbjct: 413 ---FSLTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISE 469

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  +K      RRT I  G   + DED I RED+++TV+H GY+KR+P++ YR+Q+RGG
Sbjct: 470 ELNELKGRFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGG 529

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+  +DEDFV  LFI ++H  +LFF+  G VY+ K + +P  S  ARG  +IN++ 
Sbjct: 530 RGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQ 589

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           + QGE I  ++P    E    + Y+ FAT+HG +++  L D+  I + G IA+ L   D 
Sbjct: 590 IEQGESINAVIPI---EEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++ V+    + ++++ T  G  +RFP S +R   GR++ GV+GISL + D VI M IV  
Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGISLDESDAVIGMDIV-- 703

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            + D D                                                  IL V
Sbjct: 704 -NTDLD--------------------------------------------------ILIV 712

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG+GKRT + D+RI +R GKGI+  +V+  N  G +V +  V   + +++++  GTLI
Sbjct: 713 TAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKN--GPVVGLKVVKAEEDLMIITASGTLI 770

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           R  + EI    R T+GV + +   D+ V +V R
Sbjct: 771 RTSMGEISTMGRNTQGVRLINIRDDDSVATVCR 803


>gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
 gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
          Length = 929

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/893 (44%), Positives = 562/893 (62%), Gaps = 92/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +  G+T++ I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+  +K
Sbjct: 67  EPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKESGITHDK 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YD++ RM QD+SLR  LI+GQGNFGS+DGD  AA R
Sbjct: 127 PYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TV FRPNYDGS +EP VL A+ PN+L+NG  GIAVGMATN
Sbjct: 187 YTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGIAVGMATN 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HN+ EV+DG + +IDNP+  +  LM +++GPDFPTGA ILG  GI++AY TGRG + 
Sbjct: 247 MAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGTAGIRSAYTTGRGPVK 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR V+ I++   DREQI+VTE+PYQVNKA M+E IA+LVREK I  I+DLRDESDR+G R
Sbjct: 307 IRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDESDREGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL +G +A V+LNQLY++T +++ F V  +AL   KP+   L  +L+ ++ +R E+V
Sbjct: 367 VVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQELNLKQLLEIYLEYRMEIV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + AR+ LM           
Sbjct: 427 QKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLM----------- 475

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                   ++T        L EVQ +AIL++RL RLTGL    I  EL +L   I E   
Sbjct: 476 -------DNFT--------LDEVQAKAILDMRLQRLTGLETKKILEELENLIKLIAELKK 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S      II+ ELL +K++    RRT+IV    ++ DED I   D+VVT+++ GY+K
Sbjct: 521 ILESDELKYEIIRTELLGLKEKYGDVRRTKIVHYTEEVTDEDLIPEADVVVTITNSGYIK 580

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL  Y  QRRGG+G  G+ M++EDFV +LFI STH  +LFF++ G +Y +KV+ +P G
Sbjct: 581 RIPLDTYSMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEG 640

Query: 610 SPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           S Q+RGKA++N+L L +GE +  ++P   F ED       Y++ AT+ G  ++  LS+F 
Sbjct: 641 SRQSRGKAIVNLLELREGEMVNAMIPVKEFAEDR------YLLMATRAGTTKKTPLSEFR 694

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++G IA+ LD  DE++ V     + ++L+ +K G+ +RF    +R   GR + GVRG
Sbjct: 695 NPRKAGIIAVSLDEGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPM-GRTARGVRG 753

Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           + L    D+V+SM +V                            +E T+L          
Sbjct: 754 MILDGPEDEVVSMDLV----------------------------DETTTL---------- 775

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L+V+E GFGKRT    + +  R GKG+  T V+ +   G +  V 
Sbjct: 776 ---------------LSVTENGFGKRTEYSQYPMHRRGGKGV-ITIVTNLRN-GFVANVK 818

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V ++D++++ S +G +IRVP  +I I  R T+GV I +    ++VV + RI+
Sbjct: 819 SVAEDDELMITSSEGIIIRVPAKDISIQGRNTQGVRIMNMKSGDKVVGMARIK 871


>gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 894

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/896 (43%), Positives = 551/896 (61%), Gaps = 89/896 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH LL DL K+TVDF PNYDGS  EP+V+  R PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP+  +D LM+II  PDFPT  +I G  G+K+ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVVMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLNHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D+ +RIIR SP P  A+ ELM R W++  +++++ 
Sbjct: 366 TVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKLVREMLT 425

Query: 433 LI---------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                      DD         + +G+DG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDC 532
              +  EI++ LDIL+  +R+  II +EL  VK E        RR+ +     D+  ED 
Sbjct: 486 YKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGARRSLVEHSSFDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D+V  LF+ +TH  +L F
Sbjct: 546 ITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNN 645
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++        FP D+     
Sbjct: 606 SNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQ----- 660

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ 
Sbjct: 661 -YVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKA 719

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VRF  + +R   GRN+ GVRG+ L +G  VI+M                         L+
Sbjct: 720 VRFDENDVRPM-GRNARGVRGMMLDEGQSVIAM-------------------------LV 753

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           + D                           ++Q +LT +E G+GKRT+  ++    R  K
Sbjct: 754 AED---------------------------EQQSVLTATENGYGKRTNITEYTRHGRGTK 786

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           G+ A   S+ N  G +VA   V+  D+I+L++DKG L+R  V+EIR   RAT+GV 
Sbjct: 787 GMIAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVSEIREMGRATQGVT 840


>gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 850

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/890 (43%), Positives = 560/890 (62%), Gaps = 70/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV  E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +   G   +G  YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   
Sbjct: 439 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS 
Sbjct: 498 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG
Sbjct: 558 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 617

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA
Sbjct: 618 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 674

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     V
Sbjct: 675 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 733

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I++ +V                                        +GN           
Sbjct: 734 IALIVV--------------------------------------KPKGN----------- 744

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L
Sbjct: 745 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 798

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E
Sbjct: 799 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 847


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/900 (44%), Positives = 558/900 (62%), Gaps = 71/900 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + +  V+I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  L++GQGNFGS+DGDPPAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL  R PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+  C+A+ID+P +D+  +M  I GPDFPT  ++ G  GI+ AY TGRG I 
Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSRGIQEAYLTGRGRIF 241

Query: 250 IRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +H+E  + SG R+ I+VTE+PY VNKA +LEKI ELV+EK+I  I  LRDESD++G
Sbjct: 242 LRARTHVETDEASG-RQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R    +V+LN LY +T LQ++F +NMVAL   +P+   L   L+AF+  R+E
Sbjct: 301 MRMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQPQVLNLKLALEAFLRHRQE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+RAHVL GLAIA+ N+D V+ +I+ S +P  AR  L+ RSW    +
Sbjct: 361 VVTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVV 420

Query: 428 KDLIDLID-DSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            D++     +SS   G        +G   LS  Q +AIL++RL RLTGL +  I +E   
Sbjct: 421 IDMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQ 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E L+IL++  RL+ +I++EL+ ++ +    RRT I    +D+  ED I  E++V
Sbjct: 481 VIELISELLEILANPERLMAVIREELVEMRQQYGELRRTEIQYNHVDLRLEDLIQEENVV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY
Sbjct: 541 VTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            +KV+ LP G+  ARGK ++N+L L +GERI T++P  E E      YV   T  G V++
Sbjct: 601 WKKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGK---YVFMVTASGVVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L+ F +   SG IA++L   D+++  +    E +I+L +  G+ +RF    +R   GR
Sbjct: 658 TSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKVRPM-GR 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+G+ L    +VI++ I  +        + Y K  +                    
Sbjct: 717 TARGVKGMELPPEHRVIALIIARNGTILTATELGYGKRTA-------------------- 756

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                I+E R Q                              R G+GI +   +  N  G
Sbjct: 757 -----IAEYRLQ-----------------------------GRGGQGIISIQTTPRN--G 780

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +V    V + D+I+L++++GTLIR PV +I +  R T+GV + +  + ER+V VERI E
Sbjct: 781 QVVGAVQVEEEDEIVLITNRGTLIRTPVCDISLMGRNTQGVKLINLLEGERLVGVERIVE 840


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/890 (44%), Positives = 558/890 (62%), Gaps = 93/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKP+HRRIL+ M ++ +  ++ + K A
Sbjct: 8   VVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I G+VMGKYHPHG+AAIYDA+ R+AQD+S+R  LI+G GNFGS+DGDPPAA RYTE RL
Sbjct: 68  TIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG V +I+NPD+    LM  I+GPDFPTG +ILGR GI+  Y TGRGSI++R  + 
Sbjct: 188 SEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIILGREGIREMYTTGRGSIIVRAKAT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G +++IVVTEIPY VNKA ++EKIAELVR+K +  I+DLRDESDR G R+VIELK
Sbjct: 248 IEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A VILNQLY++T +Q  F   M+AL   KP+  TL  ++  ++  ++EVVVRRTKY
Sbjct: 308 RDANAHVILNQLYKHTQMQVTFGAIMLALVENKPQVLTLREMIYHYLRHQQEVVVRRTKY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A +R H+L GL IA+ +LDEV+ +IR S +  TAR  LM+                
Sbjct: 368 ELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMK---------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q + IL++RL RLT L R  I +E   L  +I     +L    
Sbjct: 412 ----------NFGLTEKQAQVILDMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+ELL +K+     RRTRIV  + D +++D I  ED+V+T++++GYVKR+PLS 
Sbjct: 462 LVFAIIKEELLKIKERFGDERRTRIVAEVKDFDEQDLIPEEDVVITMTYMGYVKRMPLSS 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKG +G+  R+EDFV  + + +TH  VLFF++ G VY+ K   +P     A+G
Sbjct: 522 YRSQKRGGKGVTGITTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKG 581

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
            A++N+L L   E++  ++P  +  E+S    Y+V  TK G V++  LS++    ++G I
Sbjct: 582 TAIVNLLPLKPQEKVNAVIPIKDFGEAS----YLVMVTKRGLVKKTLLSEYESSRKTGII 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L S DE++ V+   ++++++L T  G  +RF +  +    GR + GV+ I+L +GD+
Sbjct: 638 AITLTSGDELIGVKLVGKKDELILGTSHGMSIRFSVEDV-TPTGRTARGVKAITLGEGDE 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V SM                                ++TS+ +D                
Sbjct: 697 VASM--------------------------------DVTSVGSD---------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVNDND 851
                +L ++EKGFGKRT   ++RI  R G+GI   R TD +     G LV +  V + D
Sbjct: 709 -----VLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVTDTT-----GRLVGLRVVAEGD 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            IIL +  G +IR+ V+ I   SR T+GV +    + ++V +V  IRESE
Sbjct: 759 DIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESE 808


>gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1]
 gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans]
 gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1]
          Length = 888

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/917 (42%), Positives = 562/917 (61%), Gaps = 80/917 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 SHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++  P   +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT Y L
Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREVVTRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI------ 431
            KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVREMLTRTRTD 430

Query: 432 -------DLIDDS---SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                  D   D     + + +DG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
             I++ LDILS   R+  II  EL  +K E        RR+ +     D+  ED I   D
Sbjct: 491 SVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   +  S+  + YV  +T  G 
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHYVFMSTSMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GV+G++L +G  VI+M                         L++ D        
Sbjct: 731 -GRNARGVKGMNLEEGQSVIAM-------------------------LVAED-------- 756

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              + Q +LT +E G+GKRTS  ++    R  KG+ A   S+ N
Sbjct: 757 -------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +  ++  ++R
Sbjct: 798 --GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLGGLQR 855

Query: 897 IRE---SEIVDEAESTE 910
           I E   SE+ DEA   E
Sbjct: 856 IVENDASEVEDEATGEE 872


>gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
 gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
          Length = 846

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/894 (44%), Positives = 551/894 (61%), Gaps = 71/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K A
Sbjct: 8   VFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  LI+GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYD S  EP VL  R PN+L NG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++  C+A+ID+P + +  LM  I GPDFPT  ++ G  GI+ AY TGRG I +R  +H
Sbjct: 188 GELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGARGIQEAYLTGRGRIFMRARTH 247

Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E   G  +Q I+VTE+PY VNKA +LEKI  LV+EK+IV I  LRDESD+ G R+V+EL
Sbjct: 248 VETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGMRMVVEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R    +V+LNQLY +T LQS+F +NMVAL   +P+   L   L+AF+  R+EVV RRT 
Sbjct: 308 RRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEAFLRHRQEVVTRRTM 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAHVL GLAIA+AN+D ++ +I+ S +P  AR  L+ R W    + D++   
Sbjct: 368 FELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVIDMLQRA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     +++Y +  DG   LS  Q +AILE+RL RLTGL +  I +E   + I I 
Sbjct: 428 GAESSQPEKLETAYGLQQDG-YRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQVIIFIL 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL++  RL+ +I++E + ++++  TPRRT I +  +D+  ED I  E++VVT+SH 
Sbjct: 487 GLLEILANPERLMAVIREEFMEMREQYSTPRRTEIQDNHVDLRLEDLIQEENVVVTLSHS 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY +KV+ 
Sbjct: 547 GYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYWKKVYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP GS  ARGK  +N+L L +GERI T++   E E    + Y+   T  G V++  L+DF
Sbjct: 607 LPQGSRVARGKPFVNLLPLEEGERINTVLSIREFE---KDKYIFMVTASGVVKKTSLADF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   D+++  +      +I+L +  G+ +RF    +R   GR + GV+
Sbjct: 664 SRPRSSGIIALDLREGDQLVGADLTDGVQEIMLFSSGGKVIRFSERDVRP-VGRTARGVK 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L    +VI++ I           + Y K  +                         I
Sbjct: 723 GMELPSEHRVIALIIAASGTILTATELGYGKRTA-------------------------I 757

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +E R Q                              R G+GI +   +  N  G +V   
Sbjct: 758 AEYRLQ-----------------------------GRGGRGIISIRTTPRN--GEVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V   D+++L+SD GTLIR PV+ I +  R T+GV + +  + ER+V +ERI E
Sbjct: 787 QVEKEDEVVLISDGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840


>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 837

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/884 (44%), Positives = 564/884 (63%), Gaps = 81/884 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ ++K ARI
Sbjct: 12  TISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARI 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YD L RMAQ +S+R  L++GQGNFGSVDGDPPAA RYTE R+ +
Sbjct: 72  VGDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTR 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L+ DL K+TVDF PNYD S  EP+VL AR PN+L+NG  GIAVGMATNIP HNL E
Sbjct: 132 IDQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG +A+I++P+I + ALME I GPDFPTGA I GR GI+ AY TGRGS+++R    +E
Sbjct: 192 VIDGLIAMIEDPNITVSALMEHISGPDFPTGAYICGRAGIREAYETGRGSLMLRSRCEVE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K    RE I++TEIPYQ NK  ++E+IA LV+EK+I  I+++RDESDRQG R+V++LK+ 
Sbjct: 252 KQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLKKD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +A+V++NQLY+ T LQ  + + ++++   +PE   L  IL+ F+  R+ VV RRT + L
Sbjct: 312 ENAEVVINQLYKMTPLQRGYGIILLSIVNNRPEILNLRQILEHFILHRKTVVYRRTAHDL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA ++AH+L GL IA+ NLDEVV +I+ S NP  AR  L+ R                 
Sbjct: 372 RKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINR----------------- 414

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LS +Q +AILE+RL RLTGL R+ I  E  +L  EI+    +L+  S +
Sbjct: 415 ---------FALSAIQAQAILEMRLHRLTGLEREKIIEEYQALMKEIEWLRRVLADESLV 465

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L II+QE  +++++    RRT I+E   ++  ED I REDMVVTV+H GY+KR P+ +YR
Sbjct: 466 LQIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVVTVTHAGYIKRNPVDLYR 525

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG  G    D+DF++ + + STH ++LFF++ G V+  KV+ +P     ARGKA
Sbjct: 526 AQRRGGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLARGKA 585

Query: 618 LINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           ++N+L L   E++  I+P    E       Y++ AT+ G V++  + +F +  R GKIA+
Sbjct: 586 VVNLLDLAPEEKLAAILPVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIAL 645

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                DEIL+      +N+ILL ++ G  VRF    IR   GR + GVRGI+L   D+++
Sbjct: 646 TFREDDEILAAALTYGDNEILLLSRKGMAVRFHEGDIRPM-GRGATGVRGINLGSADELV 704

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +++                        +SGD E  TS                      
Sbjct: 705 GVSV------------------------LSGDPE--TS---------------------- 716

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              IL V+E G+GKRT   ++R+  R GKG+ A   S+ N  GA+V +  V D DQ++++
Sbjct: 717 ---ILVVTENGYGKRTLVDEYRLIRRGGKGVMAIKASERN--GAVVGMLQVTDEDQVMMI 771

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ G +IR+P+ ++R+  R T+GV +F+   +E+VV+++R+ ES
Sbjct: 772 TNAGQIIRMPMTDLRVIGRNTQGVRLFNLGAEEKVVALDRLAES 815


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/887 (43%), Positives = 556/887 (62%), Gaps = 86/887 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +
Sbjct: 2   NEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA 
Sbjct: 62  KAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI
Sbjct: 182 NIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G 
Sbjct: 242 TIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V
Sbjct: 302 RIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++        
Sbjct: 362 IRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  
Sbjct: 414 ------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GY
Sbjct: 456 DILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLETIEDEDLIERENIVVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P
Sbjct: 516 IKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L + +GE I  I+P  E  +    LY+ F TKHG  +R  LS F  
Sbjct: 576 EYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE++ V        +++ TK G  +RFP + +R   GR + GV+GI
Sbjct: 633 IRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREM-GRTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+ M                                                 
Sbjct: 692 TLTDDDVVVGM------------------------------------------------- 702

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               E+  +E  +L V+EKG+GKRT + ++R  +R GKG++   +++ N  G LV V   
Sbjct: 703 ----EILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVTVKAT 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +++++  G LIR+ +N+I I  R T+GV +   A++E V +V
Sbjct: 757 KGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/900 (44%), Positives = 566/900 (62%), Gaps = 88/900 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GISL +GD
Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ + +   AD++                                              
Sbjct: 700 NVVDLDV---ADSE---------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           ++V++ G +IR+ V++I    RA +GV +      + V +V +++E     E VDEA+ T
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQT 826


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/910 (42%), Positives = 558/910 (61%), Gaps = 74/910 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ ++ NP   ++ LME +  PDFPT  +I G +G+++AY TGRG +V+R  
Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  +LE+IAELV+EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F VNMVAL   +P    L  ++ AF++ R E++ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P  A+  L+ ++W   + + ++ 
Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425

Query: 433 LID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            ++           D+ Y +  DG  YLSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDG-YYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVM 484

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL+   R+  II  E+ +++ E    RR+ I     D++ ED I  +D+VVT
Sbjct: 485 EQIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ YRAQRRGG+G+     +++D+V  LF+ +TH  +L FS+ G VY  
Sbjct: 545 ISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWM 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRN 660
           KV+  P+G   +RGK L+N+  L  GE+ITT++P    DE      YV  AT  G V++ 
Sbjct: 605 KVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQH----YVFMATARGTVKKT 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F+    +G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR 
Sbjct: 661 PLTAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GRE 719

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L     VI++                         L++ D            
Sbjct: 720 ARGVRGMQLEADQSVIAL-------------------------LVAED------------ 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          + Q +LT +E G+GKRTS  ++    R  KG+ A   S+ N  G 
Sbjct: 743 ---------------ETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERN--GK 785

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V  +D+I+L++D G L+R  V EIR   RAT+GV + +      ++ V+ + E+
Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845

Query: 901 EIVDEAESTE 910
           +  DE   TE
Sbjct: 846 DD-DELPPTE 854


>gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34]
 gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus
           metallidurans CH34]
          Length = 897

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/904 (42%), Positives = 562/904 (62%), Gaps = 59/904 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NPD  +D L+E++  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAR 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L AF++ R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++  +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I  +D
Sbjct: 486 REVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G 
Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y  KV+ +P GS  +RG+ ++N+  L  GE+I  I+P  + ++     ++  AT  G V
Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAEH---FIFMATARGTV 662

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   
Sbjct: 663 KKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG++L +G  VI+M +     A+ +  +              GD   + S   
Sbjct: 722 GRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVA------------EGDVSPVGS--- 766

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +LT +E G+GKRT   ++    R  KG+ A   S+ N 
Sbjct: 767 ----------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN- 803

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  ++RI
Sbjct: 804 -GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 862

Query: 898 RESE 901
            ES+
Sbjct: 863 VESD 866


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/901 (43%), Positives = 560/901 (62%), Gaps = 90/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHKPQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ V+
Sbjct: 303 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL +A+ +LDEV+ +IR S   E A+  L+++         
Sbjct: 363 RRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  VK+  +  RRT IV  GL  +EDED I RE++VVT++H GY+
Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDERRTEIVTSGLETIEDEDLITRENIVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPSSTYRSQKRGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               A+G  +IN+L + +GE I  I+P  E  DES     Y+ F TKHG  +R  LS F 
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVGEFDDES-----YLFFTTKHGISKRTPLSQFA 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE+++V        I++ TK G  +RFP + +R   GR + GV+G
Sbjct: 632 NIRNNGLIALSLRDEDELIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQM-GRTAAGVKG 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V+ M I                                  L+ DS V     
Sbjct: 691 INLTDDDVVVGMEI----------------------------------LEEDSHV----- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                         L V+EKG+GK T + ++R+ +R GKG++   +++ N  G+LV V  
Sbjct: 712 --------------LIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENN--GSLVTVKA 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
               + +++++  G +IR+ + +I    R T+GV +    + E V +V  + + E  D  
Sbjct: 756 TTGEEDLMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEENDSE 815

Query: 907 E 907
           E
Sbjct: 816 E 816


>gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
          Length = 892

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/895 (44%), Positives = 566/895 (63%), Gaps = 84/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDI 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I +E N L   I E   IL+  
Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIVNAIELENDESISTMIAVKDLESEDD--YLVFATRKGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V     E DIL+ T     +RF   A+R   GR + GV+GI+L +GD
Sbjct: 641 IAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++                                               
Sbjct: 700 EVVGLD-VAHANS----------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 712 ---EDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++V++ G +IR+ V++I    R+ +GV +     D+ V +V ++++ +  DEAES
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAES 821


>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
 gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
          Length = 892

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/895 (44%), Positives = 566/895 (63%), Gaps = 84/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDI 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I +E N L   I E   IL+  
Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIVNAIELENDESISTMIAVKDLESEDD--YLVFATRKGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V     E DIL+ T     +RF   A+R   GR + GV+GI+L +GD
Sbjct: 641 IAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++                                               
Sbjct: 700 EVVGLD-VAHANS----------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 712 ---EDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++V++ G +IR+ V++I    R+ +GV +     D+ V +V ++++ +  DEAES
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAES 821


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/887 (43%), Positives = 560/887 (63%), Gaps = 86/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM++S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  LL D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPDI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+  G + +I+V+E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAQTEIEEYKG-KPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  + +V+
Sbjct: 302 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLTLKECLEHYLGHQVQVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM++         
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I NE   L  +I E   
Sbjct: 413 -----------------FSLSYEQAQAILDMRLQRLTGLERDKIENEYKELIAKIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++EL+ VK++ +  RRT I      +EDED I R+++V+T++H GY+K
Sbjct: 456 ILADGEKVLEIIREELIEVKEKFNDERRTVISMNEDHLEDEDLIPRQNVVITLTHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGGKG  G+   D+DF+  LF  ++H ++LFF++ G VY+ K + +P  
Sbjct: 516 RMPISTYRSQRRGGKGIQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L + Q E I+T++P  E +   +N Y+ F TKHG  +R +LS F  I 
Sbjct: 576 GRTAKGIPIINLLQIEQDETISTVIPIEEFD---DNSYLFFLTKHGIAKRTQLSSFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   DE+  V       ++++ TK G  +RF  + +R+  GR + GV+GISL
Sbjct: 633 RGGLFAITLRGDDELHGVRLTDGGQEVIIGTKHGMAIRFHETDVRLM-GRTAGGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +  D V+ M I+                                             EE 
Sbjct: 692 SDDDHVVGMDIL---------------------------------------------EEN 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            Q        +L V+E G+GKRT   ++R+ NR GKGI+  ++++ N  G+LV++  V+D
Sbjct: 707 HQ--------VLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKN--GSLVSLKVVSD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              I++++  G +IR+ V  I    R T+GV +    + E V +V R
Sbjct: 757 EHDIMIITASGIIIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVAR 803


>gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 879

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/889 (43%), Positives = 563/889 (63%), Gaps = 85/889 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I  EM++S+L YA++VI+ RA+PD+RDG+KPVHRRIL+GM   G+  +K Y K ARI G
Sbjct: 13  NIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKPYKKSARIVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+++IY+A+ RMAQD+S R +L++GQGNFGS+DGD  AA RYTE R+ K A
Sbjct: 73  DVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRYTEARMSKIA 132

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L+ D+ KDT+DF  NYDG+ +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 133 MELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVI 192

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +G + +  NPDI +  LME+I+GPDFPT  +ILGR+GI+ AY TGRGS+++R  + IE  
Sbjct: 193 NGVLELSKNPDISIPELMELIQGPDFPTAGLILGRSGIRRAYETGRGSVIMRAKTLIETR 252

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGA 318
              +E I+++EIPYQVNKA ++EKIAEL R+K++  I DLRDE+  ++G R+VI+++R A
Sbjct: 253 PNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVRIVIDVRRDA 312

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+VILN LY+ T LQ+ F VNM+AL   KP+   +   +  ++  ++ VV RRT Y L 
Sbjct: 313 NANVILNNLYKQTPLQTSFGVNMLALVDGKPQVLNIKQAIYHYLEHQKTVVRRRTAYNLK 372

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA DRAH+L GL IA+ ++DE++ +IR S N   A + L ++                  
Sbjct: 373 KAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQ------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLTGL RD I +E   L   I E   IL+   +LL
Sbjct: 415 --------FKLSERQAQAILDMRLRRLTGLERDKIESEYQELLKYIDELRAILADEEKLL 466

Query: 499 GIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            II++EL+ ++D+    RRT IV G L D+EDED I  E++V+T+S   Y+KR+P S YR
Sbjct: 467 QIIREELIEIRDKYGDERRTEIVAGGLEDLEDEDLIDEENIVITLSSNNYIKRLPASTYR 526

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ RGG+G  G+   DEDFV+ +   STH +VLFF++ G VYK K + +P  S Q++G  
Sbjct: 527 AQHRGGRGIQGMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPELSRQSKGIP 586

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N++ L++ E I+T++     E    + Y+VFATKHG ++R+ LS F +IN++GKIA+ 
Sbjct: 587 IVNVIDLDKDESISTMIAVKNLERE--DAYIVFATKHGLIKRSNLSHFSRINKNGKIAIN 644

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               DE+++V        +++ TK    +RF  + +R   GR + GV+GISL +GD+VI 
Sbjct: 645 FREEDELIAVRLTDGNKQLIIGTKHASLIRFEENKLRPL-GRTAAGVKGISLREGDEVIG 703

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + ++   D                                                   E
Sbjct: 704 LDVIESND---------------------------------------------------E 712

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +L V+E G+GKRT   ++RISNR GKGI+   +++ N  G LV +  VN N+ I++V+
Sbjct: 713 HEVLVVTENGYGKRTKESEYRISNRGGKGIKTATITEKN--GNLVCITTVNGNEDIMIVT 770

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           D G +IR+ V E     R+ +GV +    + + V +V ++ +E E++DE
Sbjct: 771 DHGVIIRLDVAEFSQNGRSAQGVRLIRLDEGQFVATVAKVEKEEEVMDE 819


>gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
 gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
          Length = 868

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/901 (42%), Positives = 554/901 (61%), Gaps = 73/901 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ ++ NP   ++ LME +  PDFPT  +I G +G+++AY TGRG +V+R  
Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  +LE+IAELV+EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F VNMVAL   +P    L  ++ AF++ R E++ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P  A+  L+ ++W   + + ++ 
Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425

Query: 433 LID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            ++           D+ Y +  DG  YLSE Q + IL++RL RLTGL +D I +E   + 
Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDG-YYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVM 484

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL+   R+  II  E+ +++ E    RR+ I     D++ ED I  +D+VVT
Sbjct: 485 EQIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ YRAQRRGG+G+     +++D+V  LF+ +TH  +L FS+ G VY  
Sbjct: 545 ISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWM 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRN 660
           KV+  P+G   +RGK L+N+  L  GE+ITT++P    DE      YV  AT  G V++ 
Sbjct: 605 KVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQH----YVFMATARGTVKKT 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F     +G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR 
Sbjct: 661 PLTAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GRE 719

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L     VI++                         L++ D            
Sbjct: 720 ARGVRGMQLEADQSVIAL-------------------------LVAED------------ 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          + Q +LT +E GFGKRTS  ++    R  KG+ A   S+ N  G 
Sbjct: 743 ---------------ETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTSERN--GK 785

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V  +D+I+L++D G L+R  V EIR   RAT+GV + +      ++ V+ + E+
Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845

Query: 901 E 901
           +
Sbjct: 846 D 846


>gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 899

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/921 (44%), Positives = 576/921 (62%), Gaps = 55/921 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE +VVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------KGFYQLSEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ +   A    +E       +        G    + 
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERAGGVEEE--IEADDVDDVVETTDGAEAAVI 767

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            + +D    GN++            +ILT +E GFGKRT   ++    R  +G+     +
Sbjct: 768 EVADD----GNVA------------YILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTT 811

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +
Sbjct: 812 ERN--GKLVRAVLLGATDEVLLISDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQA 869

Query: 894 VERIRES-----EIVDEAEST 909
           VER+  S     ++VDEA ++
Sbjct: 870 VERLDASLDEVEDVVDEASAS 890


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/900 (44%), Positives = 566/900 (62%), Gaps = 88/900 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GISL +GD
Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ + +   AD++                                              
Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           ++V++ G +IR+ V++I    RA +GV +      + V +V +++E     E VDEA+ T
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQT 826


>gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis]
          Length = 888

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/915 (42%), Positives = 563/915 (61%), Gaps = 78/915 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K ARI 
Sbjct: 11  ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 71  GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 AHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD C+ ++  P   +D LMEII  PDFPT  +I G  G+K  Y TGRG +V+R   H E 
Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VIELKRG
Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RRT Y L
Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREVVTRRTVYEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI------ 431
            KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++  +++++      
Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVREMLTRTRTD 430

Query: 432 -------DLIDDS---SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                  D   D     + + +DG   LSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 431 GGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537
             I++ LDILS   R+  II  EL  +K E        RR+ +     D+  ED I   D
Sbjct: 491 SVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLSTEDLITPTD 550

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  +L FS+ G 
Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656
           +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   +  S+  + YV  +T  G 
Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHYVFMSTSMGT 670

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R  
Sbjct: 671 VKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GV+G++L +G  VI+M                         L++ D        
Sbjct: 731 -GRNARGVKGMTLEEGQSVIAM-------------------------LVAED-------- 756

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              + Q +LT +E G+GKRTS  ++    R  KG+ A   S+ N
Sbjct: 757 -------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERN 797

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +  ++  ++R
Sbjct: 798 --GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLGGLQR 855

Query: 897 IRESEIVD-EAESTE 910
           I E++  + E E+T+
Sbjct: 856 IVENDANEVEGEATD 870


>gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
 gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
          Length = 852

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/900 (43%), Positives = 565/900 (62%), Gaps = 71/900 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF PNYD S +EP++L A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSRIAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+ C+A++ N +I +D L+++I  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLSEVVEACLALLKNSNISIDELIDLIPAPDFPTAGIIYGVNGVRDGYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G+R+ I++ E+PYQVNKA +L +I ELVR+K+I  I+DLRDESD+ G RVVI
Sbjct: 246 THFEDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +VILN LY+ T +Q  F +NMVAL   +P    L  IL AF+  R EVV RR
Sbjct: 306 ELKRGEVPEVILNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQILDAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+  LM ++W++  +++++ 
Sbjct: 366 TVFELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVEEMLT 425

Query: 433 --LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
             + D         D  + + + G  +LS+ Q +AILELRL RLTGL ++ I  E   + 
Sbjct: 426 RAMADANALRPEGLDDMFGLKAQG-YHLSDAQAQAILELRLQRLTGLEQEKIVAEYKDVI 484

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL++  R+  II +EL ++K +    RR+ IV    D+  ED I   D+VVT
Sbjct: 485 EKIIDYLDILANPERITQIITEELDAIKLQFGDERRSEIVVDTQDLSMEDLITPADVVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY+K   L  YRAQ+RGG+G+     +++DF+  LFI +TH  +L FSSLG VY  
Sbjct: 545 LSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLGRVYWI 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P G  Q+RGK +IN + L +GE+I  I+P    ++   N +V  AT  G V++  
Sbjct: 605 KVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPV---KTFDENRFVFMATSFGTVKKTP 661

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS+F +   +G IA+ LD  D ++ VE    ++D++L +  G+ +RF  + +R   GR +
Sbjct: 662 LSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPM-GRTA 720

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L  G +VISM +                           + E++  L      
Sbjct: 721 RGVRGMKLGPGHKVISMLV--------------------------AENEDLAVL------ 748

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                               T +E G+GKRT   ++   NR  +G+ A   S  N  G +
Sbjct: 749 --------------------TATENGYGKRTPISEYTRHNRGTQGMIAIITSARN--GKV 786

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V  +D+I+L++  G LIR  VNE+R  SRAT+GV + +    E++  +ER+ ESE
Sbjct: 787 VTAKLVKPDDEIMLITSGGVLIRTRVNEVREMSRATQGVTLINLDAGEKLAGLERVVESE 846


>gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 878

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/908 (43%), Positives = 563/908 (62%), Gaps = 84/908 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I  
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAG 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           I LA  D V+S+       AI+      Y +R    ++ +  R                 
Sbjct: 724 IKLAGEDAVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSR----------------- 766

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +G IS                               +++ R+G  + A  V   ++I 
Sbjct: 767 GTQGVIS------------------------------IKVTERNGSVVGAVQVDDADQI- 795

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                         ++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  
Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839

Query: 900 SEIVDEAE 907
           +E VD+ E
Sbjct: 840 AEPVDDEE 847


>gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 832

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/895 (44%), Positives = 562/895 (62%), Gaps = 92/895 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+  NK + K A
Sbjct: 8   VEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YD + RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGM+T+IP HNL
Sbjct: 128 SSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG V +I  P+I    LM II+GPDFPTG  I+GR  I  AY TGRG + +R  + 
Sbjct: 188 GEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIMGRGSIYKAYKTGRGKLTVRAKTR 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    +R+QI+V E+P+QVNKA +++KIA LV++++I  I+D+RDESDR G R+VIELK
Sbjct: 248 IEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ +V+LNQLY+++ LQ  FS  M+AL   +P+  +L  IL+ ++  +++V+ RRTKY
Sbjct: 308 REATPEVVLNQLYKHSRLQITFSTIMIALVNNEPKVLSLKEILEHYLEHQKKVITRRTKY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA DRAH+L G  IA+AN+DE+V +I+ + + +TAR                I L+D
Sbjct: 368 DLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTAR----------------IALMD 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D            LSE+Q  AIL +RL  LTGL R+ I  E + L  +I     IL+   
Sbjct: 412 DYE----------LSEIQANAILRMRLQSLTGLERNKIDTEYDELQAKITRYRSILADED 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +LL I+K+E+L +KD+ +  RRT+I++ + D+E ED I  E +V+T++H GY+KR+ L +
Sbjct: 462 KLLNIVKKEILEIKDKYNDKRRTKIMDKVTDLEIEDLIEEEQIVITMTHQGYIKRMALDL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG  G+  ++EDFV ++F  +TH   LFFS+ G VY+ K +++P    QARG
Sbjct: 522 YRSQRRGGKGVIGISTKEEDFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARG 581

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A+IN+L L + ERIT ++P   FPED       Y++ ATK+G +++  L D    N +G
Sbjct: 582 TAIINLLELKEEERITAVIPVKEFPED------AYLIMATKNGLIKKTSL-DAYDTNYTG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I + L   DE++ V    ++ +I+L +K  + + F  S +R   GRNS GVRGI L++ 
Sbjct: 635 LIGINLRENDELIGVRIIDEDENIILVSKNAKAIHFNESDVRS-VGRNSYGVRGIRLSEE 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI M I                                     DS+ E          
Sbjct: 694 DYVIDMGI-------------------------------------DSAGE---------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L ++E G+GK+T   ++RI NR GKGI   ++++ N  G L A   V+ N +
Sbjct: 707 ------HLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKN--GQLAAAKIVDANSE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +++++ +G +IRV   EI    R T GV I +  +D++VVS+ RI E EIVDE E
Sbjct: 759 MMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVSLARINEDEIVDELE 813


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/892 (43%), Positives = 556/892 (62%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY++T++Q+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LMQ+         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G  + EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L L++ E I TI+P   D    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++S +       I++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M I+                                             E+
Sbjct: 694 LEDGDEVVGMEIL---------------------------------------------ED 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C         +L V++ G+GKRT + ++RI +R GKGI+  ++++ N  G +VAV  V 
Sbjct: 709 GCD--------VLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GPIVAVKTVT 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERI 897
             + ++L++  G LIR+ V++I    R T+GV +   + D   E V +V ++
Sbjct: 759 GEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/904 (43%), Positives = 564/904 (62%), Gaps = 87/904 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE   +GI  V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R  LI+G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  LL D+ K+TVDF PNYD   +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG V +ID+PD  LD LM +I+GPDFPTG VILGR GI+ AY TGRGS
Sbjct: 182 TNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I  I DLRDESDR+G
Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R     V+LN L+++T+LQ+ F V  +AL   +P+  TL   L+ ++  + +
Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR+ L+         
Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    L G+I+QE+L +K+     RRTRIV    ++ +ED I   D+V+ ++H GY
Sbjct: 456 KAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+PLS Y +QRRGG+G + +   +EDFVT L + STH  +LFF++ G +Y  K + +P
Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               QARG  ++N+L++ QGE++T ++P    D +   + Y+ FAT+ G V++  L+++ 
Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G IA+ L   D+++ V+      +I++ T+ G  +RFP + +R   GR + GV+G
Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL++GD+VI+M +   A+ D+D                                     
Sbjct: 695 ISLSEGDEVIAMDV---AEDDHD------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V+ +G+GKRT   ++R  +R GKGI+  + +  N  G  + +  
Sbjct: 715 -------------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKN--GHAIEMCM 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V ++D +++V+  G  IR+ V ++   SR T+GV + +  +   V SV R+    + D+ 
Sbjct: 760 VTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV----VKDDD 815

Query: 907 ESTE 910
           E +E
Sbjct: 816 EDSE 819


>gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 812

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/890 (43%), Positives = 554/890 (62%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  +  V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y
Sbjct: 8   EELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKPY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K   + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R  L++G GNFGS+DGDP AA RYT
Sbjct: 68  KKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 128 EARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A IDNP I  D LM  I+GPDFPTG +I+G+ GI+  Y TGRG I++R
Sbjct: 188 PHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIVGKDGIRETYETGRGKIIVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +IVVTE+PY V K+ ++EKIAELVR+K I  I+DLRDESDR G R+V
Sbjct: 248 AKAEIEEHNG-RNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNGMRIV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR  +  V+LN+LY +T +Q  F   M+AL    P+  +L  I++ +V  + +V+ R
Sbjct: 307 IELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVDVITR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA +RAH+L GL IA+ ++DEV+ +IR S     A+  LM +           
Sbjct: 367 RTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDKFG--------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q +AI+++RL RLTGL R  I +ELN L  +IKE   IL
Sbjct: 418 -----------------LSDRQAQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S   ++L IIK+EL  VKD+  + RRT IV    +++ ED +  ED VVT++H GY+KR+
Sbjct: 461 SDEKKVLDIIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVVTMTHFGYIKRM 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  Y+AQ+RGGKG SG+  R++DFV ++F  +TH  +LFF++ G VY  +   +P    
Sbjct: 521 PLDAYKAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G A+IN++ ++Q E++  ++P    + S N  YVV  TK+G +++ ++ DF +I +S
Sbjct: 581 QAKGTAIINLIQIDQDEKVNAVIPI---KKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKS 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+KLD  DE+++V       +I++ T  G C+RF    +R   GR + GV  ++L  
Sbjct: 638 GNTAIKLDDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPM-GRQARGVIAVTLRD 696

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +V   D D D                                          
Sbjct: 697 DDYVVEMDLV---DRDKD------------------------------------------ 711

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL V+E G+GKR+ + ++R   R+GKGI A  ++K  + G LV++  V++ D
Sbjct: 712 --------ILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITK--KTGKLVSIMSVSEKD 761

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++++S  G LIR  + +I    R T GV++    + +RVVS  RI   E
Sbjct: 762 ELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIANDE 811


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/892 (43%), Positives = 555/892 (62%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY++T++Q+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+  LDEV+ +IR S   E AR  LMQ+         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G  + EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L L++ E I TI+P   D    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++S +       I++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M I+                                             E+
Sbjct: 694 LEDGDEVVGMEIL---------------------------------------------ED 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C         +L V++ G+GKRT + ++RI +R GKGI+  ++++ N  G +VAV  V 
Sbjct: 709 GCD--------VLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GPIVAVKTVT 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERI 897
             + ++L++  G LIR+ V++I    R T+GV +   + D   E V +V ++
Sbjct: 759 GEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810


>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
 gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
          Length = 821

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/892 (43%), Positives = 567/892 (63%), Gaps = 92/892 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+
Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R +N      
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 416 -------------------LSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+L +KD     RRT I  G ++M EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
               A+G  ++N+L++++GE++T ++    F ED       Y +F TK G  +R  +S F
Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDEDA------YFIFTTKTGITKRTPVSQF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   D+++SV     +  I++ T+ G  VRF    IR   GR + GVR
Sbjct: 631 ANIRTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVR 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD+V+ M IV                                            
Sbjct: 690 GIKLRDGDEVVGMEIV-------------------------------------------- 705

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             E  QE       IL V+EKG+GKRTS  D+R+ +R G G++   ++  N  G +VAV 
Sbjct: 706 --EPGQE-------ILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVK 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V+ ++ I+L++  G LIR+ VN+I +  R+T+GV +     DE V +V ++
Sbjct: 755 TVDGSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKV 806


>gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
          Length = 847

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/908 (41%), Positives = 565/908 (62%), Gaps = 85/908 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + +E  ++    +SI  E+Q SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G
Sbjct: 1   MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + +N+ YVK ARI G+V+GKYHPHG+ A YD + RMAQ++SLR  L++GQGNFGS+DGD 
Sbjct: 61  IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ +    ++ DL KDTVDF PNYD S  EP V+ +R PN+L+NG  GIAV
Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HN+ EV+DG +A+ D+P+I +  LM +I GPDFPTGA I GR+GI+ AY TG
Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYICGRSGIREAYETG 240

Query: 245 RGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RG +V+R ++H+E +  G RE I++TEIPYQ NKA ++EKIA LV++K+I  I+++RDES
Sbjct: 241 RGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDES 300

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIELKR  +++V++NQLY+ T +Q  F + ++A+   KP    L  IL+ F+ 
Sbjct: 301 DRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNKPMILNLKQILEHFLV 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R+ VV RRT + L KA ++AH+L GL +A+ NLDEVV +I+ + NP  A+  L++R   
Sbjct: 361 HRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVER--- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS +Q + IL++RL RLTGL R  I ++  ++  E
Sbjct: 418 -----------------------FELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQE 454

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I     IL+  + +LGIIK E L +++     RRT I++ + D+  ED I  EDM VTV+
Sbjct: 455 ITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMAVTVT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H G++KR P ++YR+Q RGGKG SG    +EDF++DL++ ST  + LFF++ G V+  KV
Sbjct: 515 HSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKV 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+    ARGKA++N+L L++ E++  I+P    E    +  ++  TK G +++  L 
Sbjct: 575 YQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQ 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +  R GK A+ ++  DEI+       ++ +LL T  G+ + F  S +R   GR + G
Sbjct: 635 EFRRPLRKGKRALTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTM-GRTAAG 693

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L + D+V+S                                  I +  NDS    
Sbjct: 694 VRGITLGEDDEVVSA---------------------------------IVASSNDS---- 716

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           IL V+E G+GKR+   ++RI  R GKGI     S+ N  G L++
Sbjct: 717 ----------------ILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERN--GDLIS 758

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESE 901
              V+D ++I++++D G +IR+ +  +RI  R+T+GV + +   DE+VVS++ +   ES+
Sbjct: 759 AKQVSDEEEIMIIADSGKMIRMNLENVRIIGRSTQGVRLINLEGDEKVVSMDTVARDESD 818

Query: 902 IVDEAEST 909
           + DE + T
Sbjct: 819 LDDEVDGT 826


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/882 (43%), Positives = 550/882 (62%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRILF M  +G+   K Y K A
Sbjct: 9   VVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDA+ RMAQD+S R  L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ K+T+D++ N+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 AKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG VA+I+NP+I  + LM  I+GPDFPTG +ILGR GIK+AY+TGRG + IR  + 
Sbjct: 189 DEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIILGRNGIKDAYSTGRGKLKIRAKTE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++ +I+VTEIPYQVNKA ++E IA LVREK+I  I+DLRDESDR G RVVIELK
Sbjct: 249 IENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLRVVIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  + +V+LNQLY+YT+L+  F + ++AL   +P+  +L  IL  ++ F++EV++RRTKY
Sbjct: 309 RDVNPNVLLNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDHYLEFQKEVIIRRTKY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KA  RAH+L GL IA+ NLD V+++IR S   + A+  LM                 
Sbjct: 369 LLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMN---------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL +LT L RD I  E + L  +I     +L    
Sbjct: 413 ----------NFSLSDKQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQ 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L IIK+E+  +K++    RRT I     ++++ED I  E++++T++H GYVKRVPLS 
Sbjct: 463 LVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPLST 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGG+G SG+  +++DFV  LF  STH  +LFF++ G VY+ KV+ +P  S QARG
Sbjct: 523 YRNQKRGGRGISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARG 582

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A++N+L+++  E IT ++P   F ED+      Y+ F TK G  ++  LS+     + G
Sbjct: 583 TAIVNLLAIDPDEHITAVIPIQEFTEDD------YLFFVTKQGVAKKVILSELKAYRKDG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE++ V     + +I+L T+ G  ++F    +R   GRNS GV+GISL   
Sbjct: 637 LIAINLNEDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSM-GRNSRGVKGISLKDN 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M                                             +I++E    
Sbjct: 696 DRVIGM---------------------------------------------DIAQENSD- 709

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT   ++R  +R GKGI     S+  + G L     VN++++
Sbjct: 710 -------LLIVSENGYGKRTPVSEYRTQSRGGKGIYTFKPSE--KSGNLAGCIVVNEDEE 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           IILV+ +G + R  V  I   SR T+GV +     D++VVS+
Sbjct: 761 IILVTAQGVINRQQVEGISQMSRRTQGVRLIKLKDDDQVVSL 802



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 21/211 (9%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D +  V+  G  K+V LS  +A R+   G   + + ++D + D+ +      ++  +  
Sbjct: 609 DDYLFFVTKQGVAKKVILSELKAYRK--DGLIAINLNEDDELIDVHLTDGKQEIILGTEQ 666

Query: 596 GFVYK---EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           G   K   E+V  +   S   +G      +SL   +R+  +      + +  N  ++  +
Sbjct: 667 GLAIKFSEEEVRSMGRNSRGVKG------ISLKDNDRVIGM------DIAQENSDLLIVS 714

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQCVRFP 709
           ++G  +R  +S++   +R GK        ++  ++  C    ++ +I+L T  G   R  
Sbjct: 715 ENGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAGCIVVNEDEEIILVTAQGVINRQQ 774

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +  I   + R + GVR I L   DQV+S+AI
Sbjct: 775 VEGISQMS-RRTQGVRLIKLKDDDQVVSLAI 804


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/895 (43%), Positives = 560/895 (62%), Gaps = 100/895 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K + K A
Sbjct: 9   VKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPFKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+YD + RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D++ NYDG+ +EPVV+ AR+PN+LVNG  GIAVGMATNIP H L
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATNIPPHQL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +A+   PD+ +  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R    
Sbjct: 189 GEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKVE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  +E I+V EIPYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R+VIE++
Sbjct: 249 IEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V+ RRT++
Sbjct: 309 KDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLQHYLDHQKVVIRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM +               
Sbjct: 369 ELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTK--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RLTGL R+ I +E +SL   I E   IL+   
Sbjct: 414 -----------FNLSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKAILADEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L II++EL  VK+  +  RRT IV G ++ +EDED I RE++V+T++H GY+KR+P+S
Sbjct: 463 KVLEIIREELTEVKERFNDKRRTEIVAGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P  S  A+
Sbjct: 523 TYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +++ E +  I+P  E    W   ++ F TK G  +R+ LS F  I  +G I
Sbjct: 583 GIPIINLLGVDKDEWVNAIIPVEEFADDW---FLFFTTKQGISKRSPLSSFANIRNNGLI 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++SV       +I++ T  G  +RFP   +R   GR + GV+GISL+ GD+
Sbjct: 640 ALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSM-GRTATGVKGISLSAGDE 698

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M +                                  L++DS               
Sbjct: 699 VVGMEV----------------------------------LEDDSQ-------------- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL V++ G+GKRT + ++R+  R GKGI+  +++  N  G+LV++  V   + ++
Sbjct: 711 -----ILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKN--GSLVSMKAVTGEEDVM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           L++  G LIR+ VN+I    R T+GV +              IR +E  DEA ST
Sbjct: 764 LITTGGVLIRMAVNDISTMGRNTQGVRL--------------IRINEDADEAVST 804


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/900 (44%), Positives = 564/900 (62%), Gaps = 88/900 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GISL +GD
Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ + +   AD++                                              
Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           ++V++ G +IR+ V++I    RA +GV +      + V +V ++ E     E  DEA+ +
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826


>gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/914 (44%), Positives = 573/914 (62%), Gaps = 52/914 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------KGFYQLSEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YVDNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTSLSEFAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ IV       DE I     +        G    + 
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSL-IVAERAGGADEEI-EADDVDDVVETTDGAETAVI 767

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            + +D    GN++            +ILT +E G+GKRT   ++    R  +G+     +
Sbjct: 768 EVADD----GNVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 811

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +
Sbjct: 812 ERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQA 869

Query: 894 VERIRESEIVDEAE 907
           VER+  S  +DE E
Sbjct: 870 VERLDAS--LDEVE 881


>gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
          Length = 861

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 76/894 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G  WNKKY K A
Sbjct: 8   IVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYSKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I G+VMGKYHPHG++AIYD L RMAQ +S+R +L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 68  TIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRYTESRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL D+ K+TVDF PNYDGS +EP VL    PN+LVNG  GIAVGMATNIP H+L
Sbjct: 128 AKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNIPPHHL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D  + ++D+P+  +  LM  + GPDFPTGA+I G  GI  AY TG+G I IR  +H
Sbjct: 188 GETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGALINGTKGIYEAYETGKGRIYIRAKTH 247

Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      +Q IVV E+PYQVNKA +L KIAELV++K+I  I  LRDESD+ G R+VIE+
Sbjct: 248 IETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIRMVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +RG  A+VILNQL++ T LQ+ FSVNMVAL G +P+   L  +L  F+A R EVV RRT 
Sbjct: 308 RRGEVAEVILNQLFQQTQLQTTFSVNMVALVGGQPKLLGLKSLLNVFIAHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+RAH+L GLA+A++N+D+++ +I+ +  P  A+  L+ ++W A  +  ++   
Sbjct: 368 YELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAVMLAHA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
              +         Y + + G  YLS  Q +AIL+LRL RLTGL ++ I  E  S+  +I+
Sbjct: 428 GAENSRPEQLAEEYGLHAGG-YYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSIIRDIE 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL    RL+ +IK+ELL++K + +  R T I++  LD+  ED I  ED V+T+SH 
Sbjct: 487 GFLAILHIPERLVAVIKEELLAIKAQFNDQRCTHILDTHLDLSMEDLIAEEDRVITLSHE 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K  PLS Y AQRRGGKG+S   ++D+DFV  LFI +TH ++L FS+ G VY  KV+ 
Sbjct: 547 GYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWLKVYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662
           LP  S  A+GK ++N+L     ER+  I+    +PED      LY+ FAT++G V++  L
Sbjct: 607 LPHASRNAKGKPIVNLLPFEADERLNAILTTREYPED------LYLFFATQNGTVKKTPL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S++ +   +G IA+ L   D+++ VE    E +I+L +  G+ VRF    +R   GR + 
Sbjct: 661 SEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSM-GRAAG 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L  G +VI++              C +K          GD              
Sbjct: 720 GVRGMRLEAGQKVIAL--------------CVLKD--------QGD-------------- 743

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILT++E G+GKRT + D+    R  KG+ +   S+ N  G  V
Sbjct: 744 -----------------ILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERN--GNAV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               V +++ I+LV+D GTL+R  V EI  + R T+GV +  TA+ E+V++  +
Sbjct: 785 YAIQVCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRTAESEKVIAAAK 838



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 24/152 (15%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERC------------QELKLKEQFILTVSEKGFGK 810
           RL++   EE+ ++K         +++RC            ++L  +E  ++T+S +G+ K
Sbjct: 497 RLVAVIKEELLAIK------AQFNDQRCTHILDTHLDLSMEDLIAEEDRVITLSHEGYIK 550

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
                D+    R GKG     V+ I +   +  +F  N +D ++  S+KG +  + V E+
Sbjct: 551 AQPLSDYEAQRRGGKG---KSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWLKVYEL 607

Query: 871 RIASRATKG---VVIFSTAKDERVVSVERIRE 899
             ASR  KG   V +     DER+ ++   RE
Sbjct: 608 PHASRNAKGKPIVNLLPFEADERLNAILTTRE 639


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/888 (44%), Positives = 563/888 (63%), Gaps = 84/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 10  INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 70  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 190 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G R+VI++
Sbjct: 250 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDV 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 310 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 370 YNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 416 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 464 EVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPV 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S Q+
Sbjct: 524 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 583

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 584 KGIPVVNAIELENDETISTMIAVKDLESEEH--YLVFATKRGIVKRSALSNFSRINKNGK 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RFP SA+R   GR + GV+GI+L +GD
Sbjct: 642 IAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGITLREGD 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ +  V HA++                                               
Sbjct: 701 VVVGLD-VAHAES----------------------------------------------- 712

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 713 ---EDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 767

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++V++ G +IR+ V +I    RA +GV +    + + V +V +++E E
Sbjct: 768 MVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEE 815


>gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
 gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
          Length = 862

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/898 (43%), Positives = 574/898 (63%), Gaps = 71/898 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT + I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +G  WN+ Y K
Sbjct: 6   KEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+Y+A+ RMAQ + +R  LI+GQGNFGSVDGDP AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A+ LL DL K+TVD+  NYDG+ Q P +L  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI +D+LM+ I GPDFP+ A+I    G+K AY TGRG I IR  
Sbjct: 186 NLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYRGLKEAYETGRGKIYIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           S IE      RE IV+ EIPYQ+NK+ +LEKIAELV+ KRI  I +LRDESD+ G R+VI
Sbjct: 246 SEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ++K  A ++++LN LY  TSLQ  F +NMVAL+  +P+  +L  IL AFV  R  ++ RR
Sbjct: 306 DIKHDAISEIVLNNLYSLTSLQISFGINMVALHNGQPKTMSLKDILSAFVCHRRSIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-- 430
             + L KA +R HVL GL +A++N+D V+ +I+ + +   A  EL  + W +++I ++  
Sbjct: 366 IMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNNIINMRK 425

Query: 431 ---IDLID----DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +DL+     D+S  I  D   Y ++ Q +AILELRL +LT L  + +  E  ++  +
Sbjct: 426 KISVDLLHSGWLDAS-NIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYENVLKK 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTV 542
           ++  + +L + S L+G+I+QEL+S+K+E + PRRT I E ++ +++ E+ I + D+VVT+
Sbjct: 485 MENLICVLQNPSSLMGLIRQELVSIKEEYNDPRRTEISENIVSNIDLENLINQRDVVVTL 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y  K
Sbjct: 545 SYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+RLP  +  +RG+ +IN+L L+  ERIT I+P     +      V  AT  G V++  L
Sbjct: 605 VYRLPKANKGSRGRPIINLLPLDTNERITVILPVQNYTTGHQ---VFMATSSGFVKKTAL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +    G IA+ L++ DE++  +    +N+++L T  G+ VRF  + +R   GR++ 
Sbjct: 662 MEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVRFQETQVRSM-GRSAS 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L +GD+V+S+ I                                   K+ SS  
Sbjct: 721 GVRGVHLLQGDRVVSLIIP----------------------------------KDQSS-- 744

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILTV+E GFGKRT+  ++ + +R+ +G+ +  V++ N  G +V
Sbjct: 745 -----------------ILTVTENGFGKRTNQSEYPLKSRAIQGVISIKVTERN--GNVV 785

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               V+  DQI++V+D G L+R+ V+E+ I  R T+GV++  TA DE VV ++R+ ES
Sbjct: 786 GAVQVDQGDQIMIVTDSGRLVRIRVSEVNIIKRNTQGVMLIRTACDEHVVGLQRVVES 843


>gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 892

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/904 (42%), Positives = 563/904 (62%), Gaps = 64/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF  NYDGS +EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+A R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W+++ +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSALVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAEGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  EI + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I  +D
Sbjct: 486 RDIMAEIADLLDILARPERITTIIIDELTAIRAEFGDERRSQIELNATELDTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G 
Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y  KV+ +P GS  +RG+ ++N+  L++GE+I  I+P  + ++     ++  AT  G V
Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFDAEH---FIFMATARGTV 662

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   
Sbjct: 663 KKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG++L +G  VI+M +                              E      
Sbjct: 722 GRQARGVRGMNLEEGQAVIAMLVA---------------------------PAETAEEAA 754

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D+ V G++               LT +E G+GKRT   ++    R  KG+ A   S+ N 
Sbjct: 755 DAGVRGSV---------------LTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN- 798

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  ++RI
Sbjct: 799 -GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 857

Query: 898 RESE 901
            ES+
Sbjct: 858 VESD 861


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/888 (44%), Positives = 563/888 (63%), Gaps = 84/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G R+VI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPVVNAIELENDETISTMIAVKDLESEEH--YLVFATKRGIVKRSALSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RFP SA+R   GR + GV+GI+L +GD
Sbjct: 641 IAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ +  V HA++                                               
Sbjct: 700 VVVGLD-VAHAES----------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 712 ---EDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++V++ G +IR+ V +I    RA +GV +    + + V +V +++E E
Sbjct: 767 MVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEE 814


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/885 (44%), Positives = 561/885 (63%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G R+VI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQS F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQSSFGVNMIALVNGRPKLINLKEALIHYLEHQKVVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELSEIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++     ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIVNAIELENDETISTMIAVRNLESEDD--YLVFATKRGIVKRSALSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RFP SA+R   GR + GV+GI+L +GD
Sbjct: 641 IAISFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++                                               
Sbjct: 700 EVVGLD-VAHAES----------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 712 ---EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++V++ G +IR+ V +I    RA +GV +    + + V +V +++
Sbjct: 767 MVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTVAKVK 811


>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
 gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
          Length = 821

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/892 (43%), Positives = 565/892 (63%), Gaps = 86/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY TGRGSI+
Sbjct: 183 IPPHQLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I++ E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIDELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   +++ II+ E+L +K+  +  RRT I  G ++M EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++ +GE++T ++      S  ++ Y +F TK G  +R  +S F  I
Sbjct: 577 FGRTAKGLPIVNLLNIEKGEKVTAMIRVA---SFDDDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     E  +++ T+ G  VRF    IR   GR + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGEKQVIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M IV                                              E
Sbjct: 693 LRDGDEVVGMEIV----------------------------------------------E 706

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             QE       IL V+EKG+GKRTS  D+R+ +R G G++   ++  N  G +VAV  V+
Sbjct: 707 PGQE-------ILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKN--GPMVAVKTVD 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            ++ ++L++  G LIR+ VN+I +  R+T+GV +     DE V +V ++ ++
Sbjct: 758 GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKVEKA 809


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/889 (42%), Positives = 560/889 (62%), Gaps = 85/889 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+    I  + I  EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +  +
Sbjct: 3   DEKNTSRILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R+ L++G GNFGSVDGD PAA 
Sbjct: 63  KPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  LL D+ K+TVDF PN+D S +EP+VL AR+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D  V +ID PD D++ LM  ++GPDFPTGA+I+G   IK AY TGRG I
Sbjct: 183 SIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIMGTESIKEAYRTGRGKI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE+    ++QIVVTEIPYQVNKA ++E+IAELV++K+I  I+DLRDES+R G 
Sbjct: 243 KVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR  +A++ILN LY+++ ++   SV M+AL   +P+   L  +L  ++  +++V
Sbjct: 303 RIVIELKRDVNANIILNNLYKHSQMEETISVIMIALVNGEPKCLNLKEVLHYYIEHQKDV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA  RAH+L GL IA+ N+D V+  IR S     A+ +L++R        
Sbjct: 363 VTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFG------ 416

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q +AILE+RL RLTGL R+ I  E + L  +I E  
Sbjct: 417 --------------------LTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S   LLG+IK E++ +K++    RRT I     +++  D I  E++ +T++H GY+
Sbjct: 457 EILASEEVLLGVIKDEIIEIKNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   YR+Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V++   + +P 
Sbjct: 517 KRLPADTYRSQKRGGRGISALTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L  GE+I T++     +    N Y++ ATK G V++ K+SDF  I
Sbjct: 577 GKRQAKGTAIVNLLQLGPGEKIATLIDV---DGKEENKYLLIATKKGMVKKTKISDFKNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG I++ L   DE++ V+    E D++L T+ G  +RF    +R   GR ++GV+GI+
Sbjct: 634 NKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTRNGMSIRFSEKDVRGM-GRTAMGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +G                                             D+ V  +++ E
Sbjct: 693 LGEG---------------------------------------------DTVVSMSLASE 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L VSE GFGKRT   ++R   R+GKGI+  ++S+  + G++V    V 
Sbjct: 708 GTD--------MLVVSENGFGKRTDLEEYRSQIRAGKGIKTYNISE--KTGSIVGAEMVA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D++++++  G LIR+ VNEI I  R T GV + +  ++  +VS+ +I
Sbjct: 758 EDDEMMIINSDGVLIRIKVNEISIFGRVTSGVKLMNVDEEVSIVSIAKI 806


>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
 gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
 gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
          Length = 808

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/889 (43%), Positives = 559/889 (62%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++ +N       
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK-FN------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 414 ------------------LTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LL +IK E+  +K+     RRT I   EG +DM   D I  E++ +T++H GY+
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P 
Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L+  E+I T++P    + +  N Y++ ATK G V++ K  +F  I
Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR + GR ++GV+GI+
Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+K D V+SM                         L S  T+ +   KN           
Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             GFGKRT+  ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I++++  G LIR+ VNEI +  R T GV +  T  +  VVS+ +I
Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803


>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
 gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
 gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 808

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LL +IK E+  +K+     RRT I   EG +DM D   I  E++ +T++H GY+
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRD--LISDEEIAITLTHFGYI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P 
Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L+  E+I T++P    + +  N Y++ ATK G V++ K  +F  I
Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR + GR ++GV+GI+
Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+K D V+SM                         L S  T+ +   KN           
Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             GFGKRT+  ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I++++  G LIR+ VNEI +  R T GV +  T  +  VVS+ +I
Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/900 (44%), Positives = 564/900 (62%), Gaps = 88/900 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GISL +GD
Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ + +   AD++                                              
Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           ++V++ G +IR+ V++I    RA +GV +      + V +V ++ E     E  DEA+ +
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/900 (44%), Positives = 564/900 (62%), Gaps = 88/900 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GISL +GD
Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ + +   AD++                                              
Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           ++V++ G +IR+ V++I    RA +GV +      + V +V ++ E     E  DEA+ +
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/887 (43%), Positives = 553/887 (62%), Gaps = 88/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R A+A VILN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ V+
Sbjct: 303 VVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L II++EL  +K+  +  RRT IV  GL  +EDED I RE++V+T++H GYV
Sbjct: 457 ILANEERVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIERENIVITLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQ 667
               A+G  +IN+L + +GE I  I+P     S+++  LY+ F TK G  +R  LS F  
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPV----STFDEELYLFFTTKQGVSKRTALSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+++V     +  I++ TK G  +RFP   +R   GR + GV+GI
Sbjct: 633 IRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+ M I                                  L+ DS V      
Sbjct: 692 TLTDDDVVVGMEI----------------------------------LEEDSHV------ 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L V+E G+GKRT + ++R+ +R GKG++   ++  N  G LV V   
Sbjct: 712 -------------LIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKAT 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +++++  G LIR+ +N+I    R T+GV +   +  E V +V
Sbjct: 757 RGEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATV 803


>gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA]
 gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA]
 gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400]
          Length = 857

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/884 (44%), Positives = 557/884 (63%), Gaps = 58/884 (6%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR
Sbjct: 9   TAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+AA YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL+DL K+TVD  PNYDGS  EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 129 QLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLT 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++G +A I+NP+I  + L+ +I GPDFPTG  I GR GI   Y TGRG + +R  + I
Sbjct: 189 EVINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASI 248

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ I+VTEIPYQVNKA ++ KIAELVREK++  I+D+RDESDR G R+VI+LK
Sbjct: 249 ETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +  VILN LY+ T +Q+ F +NM+A+   +P   TL   +  F+  R E+V RRT +
Sbjct: 309 RDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L G  IA+  LD V+ +IR S  P  A+  LM   ++  +    + L  
Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKMGLPL 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            + ++      + L+EVQ + IL LRL RLTGL RD I  E + +   I    +IL+S +
Sbjct: 429 PAIHS-QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKEILASEA 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL  +K++    RRT IV+   ++  ED IV ED+VVTVSH GY+KR  +S 
Sbjct: 488 EILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIKRTAVSQ 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG++G+  ++EDFV  LF+ S+   +LFF+  G VY+ KV+ +P G    RG
Sbjct: 548 YRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEGGRATRG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L + E+IT I+     +   N   ++ AT+ G V+++ L ++  I   G IA
Sbjct: 608 KAIVNLLNLQENEQITAILSVKGFDDDRN---IIMATRLGVVKKSPLREYANIRSGGIIA 664

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V       D+LL +K G+ +RF     R   GR S GVRG+SL   D V
Sbjct: 665 VNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPM-GRVSRGVRGMSLEDDDVV 723

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I ++ +A                   +G T                          
Sbjct: 724 IGMEI-INPNA-------------------TGST-------------------------- 737

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E GFGKRT   ++R+ +R GKGI     ++ N  G +V +  V D + ++L
Sbjct: 738 ----IFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTDENDLML 791

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++D+G ++R+PV +  +  R T+GV + +  ++ER+V+V ++ E
Sbjct: 792 ITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAE 835


>gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 919

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/922 (42%), Positives = 564/922 (61%), Gaps = 92/922 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M  +G   N+ Y K A
Sbjct: 24  LIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+
Sbjct: 84  RVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TVDF PNYD S  EP+V+  ++PN+LVNG  GIAVGM TNIP HN+
Sbjct: 144 DRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNM 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +ID+P   +  LM+ I GPDFPT A I GR GI  AY TGRG I IR  + 
Sbjct: 204 GEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATITGREGIARAYETGRGQITIRARTE 263

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE +  GDRE I++TEIPYQVNKA ++EKIA+LVREK++  I+D+RDESDRQG R+ IEL
Sbjct: 264 IETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIEL 323

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A + V+LN L+  T L++ F   M+A++G +P    L  +L  F++ R +V+ RRT+
Sbjct: 324 KRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRTLNLKELLDRFISHRRDVITRRTR 383

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM----------QRSWNA 424
           Y L KA  R H++ GL +A   +D VV +IR S +P+ AR  LM          +R  N 
Sbjct: 384 YELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERFGNL 443

Query: 425 SDI-----KDLIDLIDDSSYTIGSD--GTMY------LSEVQTRAILELRLARLTGLGRD 471
             I     K  ++++   +     D  G  +       SE+Q + ILE+RL RLTGL R+
Sbjct: 444 PRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGLQRE 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           ++  EL +L  +I    DIL+  S LL +IK EL  ++      RRT I   + ++  ED
Sbjct: 504 ELFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGDKRRTEITGEVSEITSED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  EDMVVT+SH GYVKR PL+ YRAQ+RGG+G++G   +++DFVTDLF+ STH  ++ 
Sbjct: 564 LIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLFVASTHAFLMP 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYV 648
            ++ G +Y  KV ++P  S  +RGKA+IN++   + E++  ++    FPE      N +V
Sbjct: 624 ITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRDFPE------NRFV 677

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            F TK G V+R  LS F  +  SG IA+ ++  DE+++V+      D+LL+T  G  +RF
Sbjct: 678 FFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVKITDGSKDVLLSTAQGMSIRF 737

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P   +R   GR + GV+GI+L  GD+V+   +V                           
Sbjct: 738 PEEEVRSM-GRQAYGVKGITLVDGDEVVGADVV--------------------------- 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                  + D+++                   LTV+E G+GKRT   ++R+  R GKGI 
Sbjct: 770 -------EKDATI-------------------LTVTENGYGKRTQEAEYRVQGRGGKGI- 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK- 887
             D+      G +V +  V D D+++LV++ G LIR+   EI +  R T+GV + +    
Sbjct: 803 -IDIKTTERNGKVVGLVQVKDADEVLLVTNGGMLIRMKAREISVIGRNTQGVRLIALENG 861

Query: 888 DERVVSVERIRESEIVDEAEST 909
            E+V  + ++ ES   +E+E T
Sbjct: 862 TEKVTGISKLPESS--NESEDT 881


>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
 gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
 gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
 gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
 gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
          Length = 808

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LL +IK E+  +K+     RRT I   EG +DM   D I  E++ +T++H GY+
Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P 
Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L+  E+I T++P    + +  N Y++ ATK G V++ K  +F  I
Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR + GR ++GV+GI+
Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+K D V+SM                         L S  T+ +   KN           
Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             GFGKRT+  ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I++++  G LIR+ VNEI +  R T GV +  T  +  VVS+ +I
Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/915 (42%), Positives = 554/915 (60%), Gaps = 88/915 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L DL K+TVDF PNYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP+  ++ LMEII  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAGIIYGINGVREGYRTGRGKVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 VHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALIDGQPKLCNLKQLLEIFLEHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDR HVL GLA+A+AN+DE +  I+ SP P  A+  LM +SW++S +++++ 
Sbjct: 366 TVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSVVREMLT 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + + +DG   LS+ Q   IL++RL RLTGL +D I  E 
Sbjct: 426 RAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKIVGEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCI 533
             +  +I + LDIL+  +R+  II  EL +V+ E        RR+ +   + ++  ED I
Sbjct: 486 KDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQELGTEDLI 545

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              DMVVT+SH GY+K  PL+ YRAQ+RGG+G+     +D+D+V +LFI +TH  +L FS
Sbjct: 546 TPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWMLCFS 605

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646
           + G VY  KVW +P G   +RGK ++N+  L   E+I  ++P       FP D       
Sbjct: 606 NRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADH------ 659

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+   T  G V++  L DF    ++G IA+ LD  D ++       ++D++L +  G+ V
Sbjct: 660 YIFMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF    +R   GR + GVRG++L +G  VI+M                         L++
Sbjct: 720 RFDEEDVRPL-GRQARGVRGMALDEGQSVIAM-------------------------LVA 753

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            D                           + Q +LT +E G+GKRTS  ++    R  KG
Sbjct: 754 ED---------------------------ETQSVLTATENGYGKRTSILEYTRHGRGTKG 786

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   ++ N  G +VA   V  ND+I+L++D+G L+R  V EIR   RAT+GV + +  
Sbjct: 787 MIAIQQTERN--GKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALD 844

Query: 887 KDERVVSVERIRESE 901
           +  ++  ++RI E++
Sbjct: 845 EGAKLSGLQRIVEND 859


>gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 898

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/914 (44%), Positives = 573/914 (62%), Gaps = 52/914 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YVDNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ IV       DE I     +        G    + 
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSL-IVAERAGGADEEI-EADDVDDVVETTDGAETAVI 767

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            + +D    GN++            +ILT +E G+GKRT   ++    R  +G+     +
Sbjct: 768 EVADD----GNVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 811

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +
Sbjct: 812 ERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQA 869

Query: 894 VERIRESEIVDEAE 907
           VER+  S  +DE E
Sbjct: 870 VERLDAS--LDEVE 881


>gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 900

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/925 (43%), Positives = 574/925 (62%), Gaps = 63/925 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YADNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ +   A                       D  E T
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA----------GGVEEEIEGEEVDDVVEAT 759

Query: 774 SLKNDSSVE----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                + +E    GN++            +ILT +E G+GKRT   ++    R  +G+  
Sbjct: 760 DGGESAVIEVADDGNVA------------YILTATENGYGKRTPLTEYPRKGRGTQGVIG 807

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E
Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865

Query: 890 RVVSVERIRES-----EIVDEAEST 909
           ++ +VER+  S     E+VDEA ++
Sbjct: 866 KLQAVERLDASLDEVDEVVDEAGAS 890


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/904 (43%), Positives = 561/904 (62%), Gaps = 87/904 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE   +GI  V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R  LI+G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  LL D+ K+TVDF PNYD   +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG V +IDNPD  LD LM +I+GPDFPTG VILGR GI+ AY TGRGS
Sbjct: 182 TNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I  I DLRDESDR+G
Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R     V+LN L+++T+LQ+ F V  +AL   +P+  TL   L+ ++  + +
Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR+ L+         
Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    L  +I+QE+L +K+     RRTRIV    ++ +ED I   D+V+ ++H GY
Sbjct: 456 KAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+PLS Y +QRRGG+G + +   +EDFVT L + STH  +LFF++ G +Y  K + +P
Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               QARG  ++N+L++ QGE++T ++P    D +   + Y+ FAT+ G V++  L+++ 
Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G IA+ L   D+++ V+      +I++ T+ G  +RFP + +R   GR + GV+G
Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL++GD+VI+M +   A+ D+D                                     
Sbjct: 695 ISLSEGDEVIAMDV---AEDDHD------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V+ +G+GKRT   ++R  +R GKGI+  + +  N  G  + +  
Sbjct: 715 -------------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKN--GHAIEMCM 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   D I++V+  G  IR+ V ++   SR T+GV + +  +   V SV R+    + D+ 
Sbjct: 760 VTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV----VKDDD 815

Query: 907 ESTE 910
           E +E
Sbjct: 816 EDSE 819


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/886 (45%), Positives = 559/886 (63%), Gaps = 88/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 10  INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 70  RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 TKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 190 TEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLILGKSGIRRAYETGRGSIQMRARAS 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIPYQVNKA M+EKIAEL REKRI  I DLRDE+  R G RVVI++
Sbjct: 250 IEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLRTGVRVVIDV 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A+VILN LY++T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 310 RKDANANVILNNLYKHTPLQTSFGVNMIALVNGRPKLINLKEALVEYLEHQKTVVRRRTE 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L +R              
Sbjct: 370 YNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQER-------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I NE N L   I E  +IL++ 
Sbjct: 416 ------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I  G LD +EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 464 EVLLQLVRDELTEIKERFGDERRTEIQLGGLDHLEDEDLIPEEQIVITLSHNNYIKRLPV 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S Q+
Sbjct: 524 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 583

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G  +IN + L   E I+T++     EDE+S    ++VFATK G V+R+ LS+F  IN++
Sbjct: 584 KGIPVINAIELENDEVISTMIAVRDLEDENS----FLVFATKKGIVKRSALSNFSHINKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+     DE+++V     + DILL T     +RFP +++R   GR + GVRGISL +
Sbjct: 640 GKIAIGFKEDDELIAVRLTDGKQDILLGTAHASLIRFPENSLRPL-GRTASGVRGISLRE 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ +      D  Y E                                         
Sbjct: 699 NDVVVGL------DVAYAE----------------------------------------- 711

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +L V+EKG+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V+  +
Sbjct: 712 ----SEDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNVVCITTVSGQE 765

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +++V+D G +IR+ V +I    RAT+GV +     ++ V +V ++
Sbjct: 766 DLMIVTDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKV 811


>gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51]
 gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51]
          Length = 770

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/764 (48%), Positives = 508/764 (66%), Gaps = 45/764 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF             
Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718

Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            P+             +R   GR + GVRG+ LA GDQV+S+ +
Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV 761



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 13/160 (8%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKNDSS------VEGNISEERCQELKLKEQFILT 802
           E I  + H +++  RL+    EE+ +++   S      +     +   +EL  +E  ++T
Sbjct: 482 EEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVT 541

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R GKG  AT + + + I  L+     N +D I+L S +G  
Sbjct: 542 LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLV---ANTHDNILLFSTRGKT 598

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R+ V ++ +ASR  +G   V +    ++ER+ ++  + E
Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE 638


>gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
 gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
          Length = 883

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/904 (41%), Positives = 560/904 (61%), Gaps = 65/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAR 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK++  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++  +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKIVQEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I  +D
Sbjct: 486 RDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G 
Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y  KV+ +P GS  +RG+ ++N+  L+ GE+I  I+P  + ++     ++  AT  G V
Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAEH---FIFMATARGTV 662

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   
Sbjct: 663 KKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG++L +   VI+M +                           +T E T   +
Sbjct: 722 GRQARGVRGMNLDESQTVIAMLVA------------------------PAETAEQTEAGS 757

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             SV                   LT +E G+GKRT   ++    R  KG+ A   S+ N 
Sbjct: 758 PGSV-------------------LTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN- 797

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   V+ +D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  ++RI
Sbjct: 798 -GRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 856

Query: 898 RESE 901
            E++
Sbjct: 857 VETD 860


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/895 (42%), Positives = 560/895 (62%), Gaps = 88/895 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  + S+ I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRILF M ++G+   K Y 
Sbjct: 5   EGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEKGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G++GI+ AY TG+G I++R 
Sbjct: 185 HNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIMGKSGIRAAYETGKGRIIVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ + +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+VI
Sbjct: 245 KAEIEEEN-NRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+ +VILN LY++T +Q  F V M+AL   +P+   L  +L  ++ F++EVV RR
Sbjct: 304 ELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNEPQVLNLKQVLANYIEFQKEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AILE+RL RLTGL RD I  E   L   I     IL+
Sbjct: 412 --------------FQLSEKQAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +LL +IK EL+ +K+  +  RRT I + + D++ ED I  E++V+T++H GY+KR+ 
Sbjct: 458 SEEKLLSVIKDELIEIKNRYNDERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y +QRRGG+G   +  +++DFV  + +VSTH+ VLFF++ G VYK + + +P     
Sbjct: 518 ADTYSSQRRGGRGIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  +IN++++ Q E+I T++   +D    N  ++   TK G V++  LS+F  + ++G
Sbjct: 578 AKGTNIINLIAIEQDEKIETVLSVKDD---VNEGFLFMGTKQGLVKKTPLSEFKNLRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L V+    + DI++ T+ G  +RF  + +R   GR + GVR I+L K 
Sbjct: 635 LIAINLRDGDELLKVKITRGDADIVIVTQDGNAIRFNETDVRPM-GRTASGVRSINLRKD 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M                                       D +VEG         
Sbjct: 694 DIAVCM---------------------------------------DIAVEG--------- 705

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                + +L +SE GFGKRT   +++   R G G+    +S+  + G ++       +D+
Sbjct: 706 -----EDLLVISENGFGKRTPITEYKRQKRGGTGLITYKLSE--KTGKVIGATICKIDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++L++  G  IR+ V++I + SR+T GV +  T ++E++ ++ +I  S  +D+ E
Sbjct: 759 LMLINTSGVAIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGS--IDDKE 811


>gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 832

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/890 (43%), Positives = 562/890 (63%), Gaps = 92/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S +IT E+++S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K Y K A
Sbjct: 9   IESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDT+D+ PNYDGS  EP+VL ARYPN+LVNG  GIAVGMATNIP H+L
Sbjct: 129 SKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIPPHHL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +DG +AV DNP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGS+ IR    
Sbjct: 189 GETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLTIRAKVE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR G R+VIE++
Sbjct: 249 IEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN L++ T++QS F VNM+AL   +P+  +L  +L  ++  ++ V+ RRT +
Sbjct: 309 RDANANVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVIKRRTAF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ ++DE++ IIR S + E AR +LM+R +N            
Sbjct: 369 ELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMER-FN------------ 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL+GL R+ I  E   L   I E   IL+  +
Sbjct: 416 -------------LSERQAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKAILADEA 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +++ II+ E+  +K+     RRT I  G L+M EDED I RE+ V+T++H GY+KR+  +
Sbjct: 463 KVVEIIRTEMTDIKERYSDERRTEITAGGLEMIEDEDLIPRENSVLTLTHNGYIKRLAAN 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P    QA+
Sbjct: 523 TYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPEFGRQAK 582

Query: 615 GKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G  ++N+L++++GE +T ++    F ED       Y +F TK G  +R  +  F  I  +
Sbjct: 583 GLPIVNLLNIDKGEHVTAMIRVTEFKED------AYFIFTTKTGVTKRTPVDQFANIRTN 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV       +I++ T  G  VRF    IR   GR++ GVRGI L +
Sbjct: 637 GLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDDIRSM-GRSAAGVRGIKLRE 695

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+ M I+                                              E  Q
Sbjct: 696 GDFVVGMEIL----------------------------------------------EPGQ 709

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E       IL V+E G+GKRT   ++R+ +R G G++   ++  N  G + AV  V+ ++
Sbjct: 710 E-------ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKN--GKMCAVKAVDGSE 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            I+L++  G LIR+ VN+I +  R+T+GV +   A+ E V +V R+++ E
Sbjct: 761 DIMLITINGMLIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVARVKKEE 810


>gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
 gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
          Length = 900

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/925 (43%), Positives = 574/925 (62%), Gaps = 63/925 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +++ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVVRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YADNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ +   A                       D  E T
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA----------GGVEEEIEGEEVDDVVEAT 759

Query: 774 SLKNDSSVE----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                + +E    GN++            +ILT +E G+GKRT   ++    R  +G+  
Sbjct: 760 DGGESAVIEVADDGNVA------------YILTATENGYGKRTPLTEYPRKGRGTQGVIG 807

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E
Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865

Query: 890 RVVSVERIRES-----EIVDEAEST 909
           ++ +VER+  S     E+VDEA ++
Sbjct: 866 KLQAVERLDASLDEVDEVVDEAGAS 890


>gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 902

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/905 (44%), Positives = 572/905 (63%), Gaps = 46/905 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D +  +G ++G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           GVRGI + KG++V+S+        I + +D D  + +                T+   + 
Sbjct: 719 GVRGIRMPKGEEVVSLIVSDPAGGIEIESDEDAADEVV-------------DTTDGADAA 765

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             D + +GN++            +ILT +E G+GKRT   ++    R  +G+     ++ 
Sbjct: 766 VIDVADDGNVA------------YILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTER 813

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VE
Sbjct: 814 N--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVE 871

Query: 896 RIRES 900
           R+  S
Sbjct: 872 RLDAS 876


>gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1]
          Length = 846

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/902 (43%), Positives = 551/902 (61%), Gaps = 71/902 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+A++ NP+  +D L+EII  PDFPT  +I G  G+K AY TGRG +V+RG 
Sbjct: 186 NLNEVVDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTMGVKEAYRTGRGRVVMRGR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H+E    G+R+ +++ E+PYQVNK +++EKIAELV EK+I  I+DLRDESD+ G RVVI
Sbjct: 246 THVEDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+AF   R EV+ RR
Sbjct: 306 ELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFFGHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R HVL GLA+A+AN+DE++ +I+ +P P  A++ LM R+W +  +++++ 
Sbjct: 366 TVFELGKA-ERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVEEMLK 424

Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    +  S   G     Y LS+VQ + IL++RL RLTGL +D I NE   +   I
Sbjct: 425 RAAMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL+   R+  +I  EL +++ +     R+ IV    D+  ED I  +D+VVT+SH
Sbjct: 485 ADLLDILAKPERVTQMIVDELATIRQQFGDSCRSEIVHNAQDLSLEDLITPQDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY  K  
Sbjct: 545 TGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKYT 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLS 663
           +    +  A  +A    L   +G      +P  E DE    N ++  AT  G V++  L 
Sbjct: 605 KCRKAAASAV-QAYRQPLPAGRGREDQCHLPVKEFDE----NHFIFMATAQGTVKKTALV 659

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    R+G IA+ LD  D ++  E     NDI+L +  G+ V F    +R   GRN+ G
Sbjct: 660 EFSNPRRAGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRNTRG 718

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L    +VIS+                         LI+ D               
Sbjct: 719 VRGMKLMPKQRVISL-------------------------LIAED--------------- 738

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +Q +L  +E G+GKRT   DFR S R  +G++A   S  N  G++V 
Sbjct: 739 ------------DKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRN--GSVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              VND D+I+L++  G LIR  V EIR   RAT+GV + +  ++E++  +E++ E++  
Sbjct: 785 ARLVNDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVETDDA 844

Query: 904 DE 905
           DE
Sbjct: 845 DE 846


>gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 897

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/887 (44%), Positives = 563/887 (63%), Gaps = 84/887 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y 
Sbjct: 6   ESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K    LL DL KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP 
Sbjct: 126 ARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G +++  NPDI +  LME I+GPDFPT  +ILG++GI+ A+ TGRGSI +R 
Sbjct: 186 HNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIILGKSGIRRAFETGRGSIQLRS 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311
            + IE+  G R++IVVTE+PYQVNKA M+EKIAEL R+K+I  I DLRDE+  R G RVV
Sbjct: 246 RAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGVRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++++ A+A V+LN LY+ T LQ+ F VNM+AL   +P+  +L   L  ++  ++ VV R
Sbjct: 306 IDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKDALVEYLEHQKVVVRR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DRAH+L GL IA+ ++DE++R+IR S N + A   L ++           
Sbjct: 366 RTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQ----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL RD I  E N L   I+E   IL
Sbjct: 415 ---------------FKLSERQAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELKSIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   +LL I++ EL+ V++     R+T I + GL D+EDED I  E +V+T+SH  Y+KR
Sbjct: 460 ADEEKLLQIVRDELIDVRERYGDERKTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S
Sbjct: 520 LPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G  ++N + L+  E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F  IN+
Sbjct: 580 RQSKGIPVVNAIELDNDESISTMIAVKDLESEED--YLVFATQKGRVKRSALSNFSHINK 637

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+     DE+++V     E DIL+ T     +RFP +A+R   GR + GV+GI+L 
Sbjct: 638 NGKIAISFKQDDELIAVRLTDGETDILIGTSHASLIRFPETALRPL-GRTAAGVKGITLR 696

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ +                                ++T  ++D            
Sbjct: 697 EDDKVVGL--------------------------------DVTKAESDDE---------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   
Sbjct: 715 ---------ILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERN--GNVVCITSVTGE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +++V++ G +IR+ V +I    RA +GV +    +++ V +V ++
Sbjct: 764 EDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810


>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
 gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
          Length = 821

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/895 (43%), Positives = 569/895 (63%), Gaps = 92/895 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+
Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R +N      
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 416 -------------------LSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+L +KD     RRT I  G ++M EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
               A+G  ++N+L++++GE++T ++    F ED       Y +F TK G  +R  +S F
Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDEDA------YFIFTTKTGITKRTPVSQF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   D+++SV     +  I++ T+ G  VRF    IR   GR + GVR
Sbjct: 631 ANIRTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVR 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD+V+ M IV                                            
Sbjct: 690 GIKLRDGDEVVGMEIV-------------------------------------------- 705

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             E  QE       IL V+EKG+GKRTS  D+R+ +R G G++   ++  N  G +VAV 
Sbjct: 706 --EPGQE-------ILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVK 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            V+ ++ ++L++  G LIR+ VN+I +  R+T+GV +     +E V +V ++ ++
Sbjct: 755 TVDGSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDEELVATVAKVEKA 809


>gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 934

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/952 (42%), Positives = 572/952 (60%), Gaps = 134/952 (14%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+V+GC+A+I+N ++ +D LM  I GPDFPTGA+I GR GI  AY TGRGS+ +R  + 
Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKAE 247

Query: 256 IE---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +E   KTS  RE I+V E+PYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 248 VEVDDKTS--RETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T LQ+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+ +L+ R W   ++  +++
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLE 425

Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              D +         + I  +G  +L+E Q +AIL+LRL +LTGL    I  E  SL   
Sbjct: 426 KAGDDAARPEWLEPEFGI-REGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+S
Sbjct: 485 IAELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLITPEDVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  P++ Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV
Sbjct: 545 HQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L +GERIT I+P  E     ++ YV FAT  G V++  LS
Sbjct: 605 YQLPEASRGARGRPIINLLPLEEGERITAILPVKE---YADDKYVFFATADGTVKKTSLS 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708
            F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF               
Sbjct: 662 AFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAADADVS 721

Query: 709 ---------------------------PISAIRVFAG-----RNSVGVRGISLAKGDQVI 736
                                         +   F G     R + GVRGI L  GD+V+
Sbjct: 722 DDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKVV 781

Query: 737 SM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           S+       AI+   +  Y +R    ++ +  R      T+ + S+K D           
Sbjct: 782 SLIVPRGEGAILTATENGYGKRTALTEYPTKSR-----GTQGVRSIKVDE---------- 826

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                                           R+GK I A                 V+D
Sbjct: 827 --------------------------------RNGKVIDA---------------IQVDD 839

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            DQI+L+++ GTL+R  V+E+ I  R T GV +  T +DE VV ++RI ES+
Sbjct: 840 TDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESD 891



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 10/143 (6%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           P  R    +  + L  G+++ +++  P  E +     ++ AT++G  +R  L+++   +R
Sbjct: 761 PMGRTAGGVRGIRLLNGDKVVSLI-VPRGEGA-----ILTATENGYGKRTALTEYPTKSR 814

Query: 671 S--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              G  ++K+D R+ +++        + I+L T  G  VR  +S + +  GRN+ GVR I
Sbjct: 815 GTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGTLVRTRVSEVSII-GRNTGGVRLI 873

Query: 728 SLAKGDQVISMAIVLHADADYDE 750
              + + V+ +  +  +D + ++
Sbjct: 874 RTGEDETVVGLQRIAESDEEEND 896


>gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 899

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/925 (44%), Positives = 576/925 (62%), Gaps = 63/925 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQAAQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL++V++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINVREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ +   A                      G  EEI 
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA---------------------GGVEEEIE 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
             + D  VE     E    +++ +     +ILT +E G+GKRT   ++    R  +G+  
Sbjct: 749 GDEVDDVVEATDGGESAV-IEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIG 807

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E
Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865

Query: 890 RVVSVERIRES-----EIVDEAEST 909
           ++ +VER+  S     E VDEA ++
Sbjct: 866 KLQAVERLDASLDEVDEGVDEASAS 890


>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
 gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
          Length = 808

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/889 (43%), Positives = 559/889 (62%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++ +N       
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK-FN------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 414 ------------------LTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LL +IK E+  +K+     RRT I   EG +DM   D I  E++ +T++H GY+
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P 
Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L+  E+I T++P    + +  N Y++ ATK G V++ K  +F  I
Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR + GR ++GV+GI+
Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+K D V+SM                         L S  T+ +   KN           
Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             GFGKRT+  ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I++++  G LIR+ VNEI +  R T GV +  T  +  VVS+ +I
Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803


>gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 899

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/925 (44%), Positives = 576/925 (62%), Gaps = 63/925 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   LSEVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ +   A                      G  EEI 
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA---------------------GGVEEEIE 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
             + D  VE     E    +++ +     +ILT +E G+GKRT   ++    R  +G+  
Sbjct: 749 GDEVDDVVEATDGSESAV-IEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIG 807

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E
Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865

Query: 890 RVVSVERIRES-----EIVDEAEST 909
           ++ +VER+  S     E VDEA ++
Sbjct: 866 KLQAVERLDASLDDVDEGVDEASAS 890


>gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 843

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/896 (44%), Positives = 566/896 (63%), Gaps = 68/896 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I +E+ +SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +G  WN+ Y K
Sbjct: 6   KEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRNYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQ + +R  L++GQGNFGSVDGDP AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A+ LL DL K+TVD+  NYDG+   P +L AR PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LM+ I GPDFPT A+I    G+K AY+TGRG I IR  
Sbjct: 186 NLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDSGGLKEAYSTGRGKIYIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           S IE      RE IV+ EIPYQVNKA +LEKIAEL + KRI  I +LRDESD+ G R+V+
Sbjct: 246 SEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A ++VILN LY  TSLQ+ F +NMVAL+  +P+  +L  IL AFV  R  VV+RR
Sbjct: 306 EIKRDAISEVILNNLYSLTSLQTSFGINMVALHQGQPKIMSLKDILSAFVCHRRAVVIRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-- 430
             + L KAR R H+L GLAIA+ N+D V+++IR S +   A   L+  SWN  ++ D+  
Sbjct: 366 VTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVFDMKQ 425

Query: 431 ---IDLIDDSSYTIGS---DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              I+L+      + +   +    L++ Q +AIL+L+L +LT L  + +  E +SL  +I
Sbjct: 426 RTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSLLEKI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           K  + IL     L+ +I+QELL +++E +  RRT I   + ++  E+ I ++D+VVT+S+
Sbjct: 486 KNLISILKDPKCLMRVIRQELLMIQEEYNDSRRTEISSNIENINVENLINQKDVVVTLSY 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNYGRIYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           RLP  S  +RGK +IN+L L+  ERIT I+P     +      V  AT  G V++  L++
Sbjct: 606 RLPAASRGSRGKPIINLLPLDVNERITAILPIQNYTTGHQ---VFMATSSGVVKKTPLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G IA+ L+  DE++  +     N+++L T  G+ VRF  + +R   GR+++GV
Sbjct: 663 FSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRS-VGRSAIGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +GI L +GD+V+S+ I                                   K+ SS    
Sbjct: 722 KGIHLLQGDRVVSLIIP----------------------------------KDKSS---- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV+  GFGKRT+  ++ I +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------ILTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTERN--GNVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             VN +DQI++++D G L+R  V+E+ I  R T+GV++  TA +E VV ++ + ES
Sbjct: 787 VQVNQSDQIVMITDLGRLVRTRVSEVNIIRRNTQGVMLIRTACNECVVGLQCVVES 842


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/900 (44%), Positives = 563/900 (62%), Gaps = 88/900 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I +E N L   IKE  +IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +IN++GK
Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GISL +GD
Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ + +   AD++                                              
Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           ++V++ G +IR+ V++I    RA +GV +      + V +V ++ E     E  DEA+ +
Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826


>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
          Length = 808

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LL +IK E+  +K+     RRT I   EG +DM D   I  E++ +T++H GY+
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRD--LISDEEIAITLTHFGYI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P 
Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L+  E+I T++P    + +  N Y++ ATK G V++ K  +F  I
Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR + GR ++GV+GI+
Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+K D V+SM                         L S  T+ +   KN           
Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             GFGKRT+  ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I++++  G LIR+ VNEI +  R T GV +  T  +  VVS+ +I
Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803


>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
 gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
 gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
          Length = 808

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    LL +IK E+  +K+     RRT I   EG +DM   D I  E++ +T++H GY+
Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P 
Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L+  E+I T++P    + +  N Y++ ATK G V++ K  +F  I
Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR + GR ++GV+GI+
Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+K D V+SM                         L S  T+ +   KN           
Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             GFGKRT+  ++R   R+GKGI+  ++S+  + G +V    VN
Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I++++  G LIR+ VNEI +  R T GV +  T  +  VVS+ +I
Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803


>gi|167038685|ref|YP_001661670.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/891 (44%), Positives = 557/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +V
Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   I
Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P    + S +  YVV  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIGQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V               H  ++  ++   TE+    + D      + E R 
Sbjct: 692 EDDEVVEMDLV---------------HPGSEILVV---TEKGFGKRTD------LEEYRL 727

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q          T + KG          R+S ++GK               LV++  VN  
Sbjct: 728 Q----------TRAGKGI------IAIRLSEKTGK---------------LVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807


>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
 gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
          Length = 835

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/890 (44%), Positives = 550/890 (61%), Gaps = 84/890 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+   +V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  +NK Y 
Sbjct: 4   EQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + R+AQD+++R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL K+TVDF PNYD S QEP+VL  ++PN+LVNG  GIAVGMAT IP 
Sbjct: 124 VRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG VA+ID+P +D + L  +I GPDFPT   ILGR GI+ AY TGRG + +R 
Sbjct: 184 HNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFILGREGIRKAYETGRGIVQMRA 243

Query: 253 VSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + +EK     RE+IVVTEIPYQVNKA ++EKIAELV+ ++I  I+DLRDESDR+G RVV
Sbjct: 244 RALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGIRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+    +VILNQLY+ T++QS F + M+A+   +P   +L  +L+ F+  R+E+V R
Sbjct: 304 VELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQPRVLSLRAVLEHFIEHRKEIVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L KA ++AH+L G  IA+ NLDEV+ II+ S NP  A++ LM+R           
Sbjct: 364 RCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMER----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AIL++RL RLTG+ RD I  E   +   I    +IL
Sbjct: 413 ---------------FALSEIQAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   +L IIK EL  ++++   PRRT IV+   D+  ED IV EDMVVTVSH GY+KR 
Sbjct: 458 ASEVEILKIIKSELSEIREKFADPRRTEIVDHRGDLSLEDLIVDEDMVVTVSHSGYIKRN 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +S+YR+QRRGGKG +G+  ++EDFV  LFI STH+ VL F+  G VY  KV  +P G  
Sbjct: 518 AVSLYRSQRRGGKGVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RGKA++N+L L  GE +T+I+P  E        Y++FAT++G V++  L  +      
Sbjct: 578 ASRGKAIVNLLQLQSGENVTSILPVRE---FTEGRYIIFATQNGIVKKTDLMAYANPRSG 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ +D  D ++S      E D+LL ++ G+ +RFP    R   GR S GVRG++L  
Sbjct: 635 GIIALTIDEGDRLVSTRLSDGEMDVLLASQNGKAIRFPEKDARAM-GRTSRGVRGMALEG 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVI M +V  +D      +   +H   +R                     N+ E R Q
Sbjct: 694 DDQVIGMEVV--SDTTAATLVTVTEHGYGKRT--------------------NLDEYRQQ 731

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                                         R GKGI     S+ N  G +V +  +ND+ 
Sbjct: 732 -----------------------------GRGGKGIITIKTSERN--GKVVDIKLINDDF 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++ ++D G ++R  V ++ +  R T+GV +      ER+V+V ++ E E
Sbjct: 761 DLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVLEPGERIVAVAKLAEKE 810



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFP 709
           +HG  +R  L ++ Q  R GK  I +K   R+ +++ ++    + D++  T  G+ +R  
Sbjct: 716 EHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTR 775

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           ++ + V  GRN+ GVR + L  G++++++A +   + D
Sbjct: 776 VADLSVI-GRNTQGVRLMVLEPGERIVAVAKLAEKEED 812


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/902 (44%), Positives = 562/902 (62%), Gaps = 91/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRARAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVT+IPYQVNKA M+EKIAELVREK+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A+VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I NE N L   I E  +IL+  
Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADD 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G  +IN + L+  E I+T++     EDE S    Y+VFATK+G V+R+ LS+F  IN++
Sbjct: 583 KGIPVINAIELDNDETISTMIAVRNLEDEDS----YLVFATKNGIVKRSALSNFSHINKN 638

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+     DE+++V       DIL+ T     +RF  +++R   GR + GVRGISL +
Sbjct: 639 GKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISLRE 697

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ +  V HAD+                                             
Sbjct: 698 DDVVVGLD-VAHADS--------------------------------------------- 711

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  VN  +
Sbjct: 712 -----EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNGEE 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAES 908
            +++V++ G +IR+ V +I    RAT+GV +     D+ V +V ++    E E   EA  
Sbjct: 765 DLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQ 824

Query: 909 TE 910
           TE
Sbjct: 825 TE 826


>gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
 gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
          Length = 848

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/890 (42%), Positives = 557/890 (62%), Gaps = 86/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  + K A
Sbjct: 7   LISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYTE ++
Sbjct: 67  RIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEAKM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  ++ D+ KDTVD   N+D + +EP VL  R P +L+NG  GIAVGMATN+P HNL
Sbjct: 127 RKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG  A ID+ DID++ LME ++ PDFPTG  I G  G++ A+ TGRG +V+RG + 
Sbjct: 187 SEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRGKAV 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G RE +VVTEIPYQVNKA M++K A+LV EK+I  I+ +RDESDR G R+V  LK
Sbjct: 247 FEEVQG-RECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVYILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++LN LY+YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVRRTKY
Sbjct: 306 RDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVRRTKY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +LM+R               
Sbjct: 366 ELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMER--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q +AI+E+RL +LTGL +D +R+E + L   I++  DIL  + 
Sbjct: 411 -----------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + IIK EL  +KD+    RR+ I     DM  ED I  E +V+T+SH GY+KR PL+ 
Sbjct: 460 RRMQIIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPLTE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG G+     R+EDF+ D+F+ + H  ++FF+  G  +  +V+ +P GS  ++G
Sbjct: 520 YKTQNRGGVGQKASTTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKG 579

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +   +G 
Sbjct: 580 RAIQNLINIEPDDKVKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRINGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731
            A+ +   DE+L  +  T +++I+L  K G+C+RF  S  R   GR++ GVRGI LA  K
Sbjct: 640 NAITIKEDDELLEAKLTTGDSEIMLAVKSGKCIRFEESKTRPM-GRSASGVRGIRLADEK 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M +V + D+D                                            
Sbjct: 699 TDEVVGMVVVNNNDSD-------------------------------------------- 714

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL VSE G+GKR+S  D+R++NR GKG++   V+  ++ G LVA+  V D+D
Sbjct: 715 --------ILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVT--SKTGELVAIKNVTDDD 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +++++  G  IR+ V  +R+  RAT+GV + +   D+ + +V ++++ E
Sbjct: 765 DLMIINKSGIAIRLSVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDE 814


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/892 (43%), Positives = 558/892 (62%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQNPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A I GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEVVD  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A++ VILN LY++T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM++         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G+ + +DED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVIGGIEEFDDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG  +IN+L L++ E I TI+P   +    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTARGIPIINLLELDKDEWINTIIPI--NNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+       I++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M I+                                             E+
Sbjct: 694 LEDGDEVVGMEIL---------------------------------------------ED 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C         +L V++ G+GKRT + ++RI +R GKG++  ++++ N  G++VAV  V 
Sbjct: 709 DCD--------VLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKN--GSVVAVKTVT 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERI 897
             + ++L++  G LIR+ V++I    R T+GV +   + D   E V +V ++
Sbjct: 759 GEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKV 810



 Score = 37.7 bits (86), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIV 583
           +++ ++DC V   +VVT +  GY KR P S YR Q RGGKG ++  +      V  +  V
Sbjct: 703 MEILEDDCDV---LVVTKN--GYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVAVKTV 757

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           +    ++  ++ G + +  V  +       +G  LI +   ++ E + T+   P
Sbjct: 758 TGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKVP 811


>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 826

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/888 (44%), Positives = 554/888 (62%), Gaps = 87/888 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+GM ++G   +K Y K AR+ 
Sbjct: 24  VQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKKSARVV 83

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+AAIYD + RMAQD+SLR  L++GQGNFGS+DGD  AA RYTE RL++ 
Sbjct: 84  GDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEVRLERI 143

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L DL K+TVDF PN+D + +EPVVL AR PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 144 AEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPHNLGEI 203

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDG +AVIDNP+I+   L+  ++GPDFPT   I G+ GIK AY TGRGSI +R  + I  
Sbjct: 204 VDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAKAEIVD 263

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            +G +  I+VTEIPY VNKA ++E IA+LV++K+I  I+DLRDESDR G R+VIELK+ A
Sbjct: 264 ENG-KMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIELKKAA 322

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+VILNQL+++T ++S F VN +AL    P   +L   +  F+  R+EVV RR+++ L 
Sbjct: 323 NANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRRSQFELK 382

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+ R H+L GL IA+ N+D+ VRIIR S N + A+  LM++                  
Sbjct: 383 KAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYG---------------- 426

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q+RAIL++RLARLT L R  I +E   L  EI    ++L+S   +L
Sbjct: 427 ----------LSDEQSRAILDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVL 476

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK ELL +K +    RRT+IVE   ++ DED I  E++VVT+S+ GY+KR+P+  YR 
Sbjct: 477 DIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRT 536

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKA 617
           QRRGG G  G+  ++EDFV DLF+ STH ++LFFS+ G VY  KV+ +P   S QARGKA
Sbjct: 537 QRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKA 596

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +IN++++  GE I  ++P    ++  +  ++V  T+ G +++  LS F  I  +G IA+ 
Sbjct: 597 IINLINIEPGEAINAMIPI---KTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIG 653

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+S DE++SV+      ++L+ T+ G+C RF  S +R   GR ++GV GI L +      
Sbjct: 654 LESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTM-GRPAMGVIGIRLTE------ 706

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                                                  ND  +          E+    
Sbjct: 707 ---------------------------------------NDKVI--------AMEIVSPG 719

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q +LT+ E GFGKRT   ++   +R G+G+     +  N  GA+VAV  V  +DQI++ S
Sbjct: 720 QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRN--GAVVAVISVMPDDQIVIAS 777

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +G + R+ V +I    R T+GV +     ++ VV+V R+   +  DE
Sbjct: 778 KEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKEDE 825


>gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2]
 gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2]
          Length = 870

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/887 (43%), Positives = 544/887 (61%), Gaps = 86/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+   ++SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y
Sbjct: 4   QEEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K AH +L DL K+TVDF PNYD +  EP VL  ++P +LVNG  GIAVGM TNIP
Sbjct: 124 EVRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+GEVV G +A+++ PDI ++ LM  I GPDFPT   I GR GI  AY TGRG I +R
Sbjct: 184 PHNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIYGRKGIHEAYTTGRGIITVR 243

Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E  S  + E IVVTE+PYQVNKA ++EKIAEL+R K I   + +RDESDRQG R+
Sbjct: 244 AKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I LKR    DV++NQLY++T++ + F +  +A+   +PE FTL  +L+ F+  R  V++
Sbjct: 304 AIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNRPELFTLKELLEQFLNHRRSVII 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT +   KA DRAH+L GL  A+ NLD VV +IR S +PE A+  L+Q           
Sbjct: 364 RRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQ----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +  L+++Q +AILE+RL RLTGL RD I  E   L  ++    +I
Sbjct: 413 ---------------SFELTQIQAQAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LSS   +  IIKQEL  +KDE    RRT+IVE   ++  ED I  EDMVVTV+  GY+KR
Sbjct: 458 LSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+++Y +Q RGGKG++ +  +DEDFV  LF+ STH + LF ++LG VY+ KV+ LP+  
Sbjct: 518 NPITLYASQHRGGKGKTAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAG 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             + GKA++N+L+  QGE++ T++  PE      + YVV ATK G V++  L  + +   
Sbjct: 578 RTSLGKAIVNLLNFEQGEKLATVLTVPE---FVEDRYVVMATKLGRVKKTDLMAYSRPRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G I +KL   DE+++      + DI L ++ G+ +RF  + +R  A R S+GVRG+ + 
Sbjct: 635 GGLIGIKLADDDELIAAGITDGKTDIFLGSEGGKVIRFDENDVRTTA-RGSMGVRGMRID 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G  V+ M ++ H                                               
Sbjct: 694 PGSCVVGMEVLNHG---------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +LTV+E G+GKRT   ++R   R GKG+ +   S+ N  G +VA+  V D 
Sbjct: 708 -------QTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERN--GKMVALLLVEDE 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D+++LV+D G LIR  + +I + SR T+GV + + +  E+++   R+
Sbjct: 759 DELMLVTDGGKLIRTGIQDISVISRNTQGVKLINLSPGEKLIGAARL 805


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/902 (44%), Positives = 561/902 (62%), Gaps = 91/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRARAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVT+IPYQVNKA M+EKIAELVREK+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A+VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I NE N L   I E  +IL+  
Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADD 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR+Q RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G  +IN + L+  E I+T++     EDE S    Y+VFATK+G V+R+ LS+F  IN++
Sbjct: 583 KGIPVINAIELDNDETISTMIAVRNLEDEDS----YLVFATKNGIVKRSALSNFSHINKN 638

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA+     DE+++V       DIL+ T     +RF  +++R   GR + GVRGISL +
Sbjct: 639 GKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISLRE 697

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ +  V HAD+                                             
Sbjct: 698 DDVVVGLD-VAHADS--------------------------------------------- 711

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  VN  +
Sbjct: 712 -----EDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNGEE 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAES 908
            +++V++ G +IR+ V +I    RAT+GV +     D+ V +V ++    E E   EA  
Sbjct: 765 DLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQ 824

Query: 909 TE 910
           TE
Sbjct: 825 TE 826


>gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170]
 gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170]
          Length = 844

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/900 (42%), Positives = 560/900 (62%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D S QEP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA IDN DI++D L+  I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+  G RE I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR+G RVV
Sbjct: 243 AKAVIEEVQG-RECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YT+LQS FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  LM+R           
Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R+E   +   I +  DIL
Sbjct: 411 ---------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK ELL VKD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DRKERRMQIIKDELLEVKDKYGDERRSEINFAGGDLSIEDMIPNEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   NN +V+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   DE+L  +  T  ++I L  K G+ +RF  S  R   GRN+ GVRGI L
Sbjct: 636 QNGINAIGIRENDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGIRL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V                                     ++ E N    
Sbjct: 695 ADDNDEVIGMVSV-------------------------------------NNFEDN---- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR++  D+R++NR GKG++   +++  + G LV++  V+
Sbjct: 714 -----------ILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITE--KTGGLVSIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
           D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ ++ + V+E +
Sbjct: 761 DADDLMIINKSGIAIRMSVEDLRVMGRATQGVKLINIKGADSIAAVAKVMKDDDAVEEVD 820


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/882 (43%), Positives = 558/882 (63%), Gaps = 87/882 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  +E I+V+E+PYQVNKA ++E+IAELVRE++I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   +   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G ++ ++DED I  E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P    E+  +  Y+VF+TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ETFDDERYLVFSTKQGIAKRSSLSSFAHI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+V+SM                                EI    +D          
Sbjct: 693 LDDNDEVVSM--------------------------------EILEDHHD---------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V++KGFGKRT + ++R+ +R GKG++  +V++ N  G++VAV  V 
Sbjct: 711 -----------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERN--GSVVAVTTVV 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDE 889
            N+ +++++  G LIR+ V++I    R  +GV +I  + +DE
Sbjct: 758 GNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDE 799


>gi|297543508|ref|YP_003675810.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/889 (44%), Positives = 553/889 (62%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y 
Sbjct: 3   EDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RYTE
Sbjct: 63  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 123 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+R 
Sbjct: 183 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +VVI
Sbjct: 243 KAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV RR
Sbjct: 302 ELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +            
Sbjct: 362 TKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG---------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   IL+
Sbjct: 412 ----------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR+P
Sbjct: 456 DERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P    Q
Sbjct: 516 LDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQ 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + QGE++T ++P    + S +  YVV  TK G +++  + +F  I R+G
Sbjct: 576 AKGTAIVNLIQIGQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNG 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+++ +    E +I++ T  G  +RF    IR   GR + GV  ISL + 
Sbjct: 633 IIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M +V               H  ++  ++   TE+    + D      + E R Q 
Sbjct: 692 DEVVEMDLV---------------HPGSEILVV---TEKGFGKRTD------LEEYRLQ- 726

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    T + KG          R+S ++GK               LV++  VN  D+
Sbjct: 727 ---------TRAGKGI------IAIRLSEKTGK---------------LVSIRSVNPEDE 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +++S  G LIR+ V+EI    R T+GV +      +RVVS  RI   E
Sbjct: 757 FMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805


>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 884

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++ +ST
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/866 (44%), Positives = 546/866 (63%), Gaps = 86/866 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 9   VTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+ + RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTESRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D++ NYDG  +EPVVL AR+PN+LVNG  GIAVGMATNIP H L
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHQL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++DG +A+   PDI +  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R    
Sbjct: 189 GEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMILGRSGIRKAYETGRGSITLRAKVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  S  +E I+V EIPYQVNKA ++EKIAELVR+K++  I DLRDESDR G R+VIE++
Sbjct: 249 IETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A VILN LY+ T+LQ+ F +NM+AL   +P+   L   LK ++  ++ V+ RRT++
Sbjct: 309 KDANASVILNNLYKLTALQTSFGINMLALVDGQPKVLNLKQCLKYYLDHQQVVIRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ +LDEV+ +IR S   E AR  LM +               
Sbjct: 369 ELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQ--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I +E  SL   I E   IL+   
Sbjct: 414 -----------FELSDKQAQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L II++EL  +K+  +  RRT IV G ++ +EDED I RE++V+T++H GYVKR+P+S
Sbjct: 463 KVLEIIREELTEIKERFNDERRTEIVSGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P  S  A+
Sbjct: 523 TYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPEFSRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N+ E +  ++P  E    W   ++ F TK G  +R+ L+ F  I  +G I
Sbjct: 583 GIPIINLLGINKDEWVNAVIPVEEFVDEW---FLFFTTKEGISKRSPLTSFGNIRNNGLI 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++SV       +I++ TK GQ +RFP + +R   GR + GV+GI+L   D+
Sbjct: 640 ALNLREGDELISVRLTDGSKEIIIGTKNGQLIRFPETDVRSM-GRTATGVKGITLDSDDE 698

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M ++                                             EE  +   
Sbjct: 699 VVGMEVL---------------------------------------------EENSE--- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL V++KG+GKRT   ++R+  R GKGI+  +++  N  G +VAV  V   + I+
Sbjct: 711 -----ILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKN--GTIVAVKVVTGEEDIM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGV 880
           L++  G LIR+ V +I    R T+GV
Sbjct: 764 LITTGGVLIRMAVGDISTMGRNTQGV 789


>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
 gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
          Length = 886

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++ +ST
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/889 (44%), Positives = 553/889 (62%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y 
Sbjct: 3   EDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RYTE
Sbjct: 63  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 123 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+R 
Sbjct: 183 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +VVI
Sbjct: 243 KAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV RR
Sbjct: 302 ELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +            
Sbjct: 362 TKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG---------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   IL+
Sbjct: 412 ----------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR+P
Sbjct: 456 DERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P    Q
Sbjct: 516 LDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQ 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + QGE++T ++P    + S +  YVV  TK G +++  + +F  I R+G
Sbjct: 576 AKGTAIVNLIQIAQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNG 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+++ +    E +I++ T  G  +RF    IR   GR + GV  ISL + 
Sbjct: 633 IIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M +V               H  ++  ++   TE+    + D      + E R Q 
Sbjct: 692 DEVVEMDLV---------------HPGSEILVV---TEKGFGKRTD------LEEYRLQ- 726

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    T + KG          R+S ++GK               LV++  VN  D+
Sbjct: 727 ---------TRAGKGI------IAIRLSEKTGK---------------LVSIRSVNPEDE 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +++S  G LIR+ V+EI    R T+GV +      +RVVS  RI   E
Sbjct: 757 FMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805


>gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
 gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
          Length = 830

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/882 (42%), Positives = 551/882 (62%), Gaps = 86/882 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M ++  EWNK Y K AR+ 
Sbjct: 11  ISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSARVV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDA+ RMAQD+S+R +L++GQGNFGSVDGD PAA RYTE R+QK 
Sbjct: 71  GDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQKL 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L+D+ K+TVD   NYD S  EP+VL +R P +L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 AHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D   A+IDNPD+ ++ALM+ + GPDFPT  +I G  GI   YATGRG I +RG   +EK
Sbjct: 191 ADAITALIDNPDMSVEALMQHVPGPDFPTCGIIHGTDGIAEGYATGRGKIRVRGRVFVEK 250

Query: 259 TSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              D  E IVV E+PYQVNKA ++EK+AELV++K I  I  +RDESD++G R+ I LKR 
Sbjct: 251 GKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGLKRN 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             ADV++NQLY++T L++ F +NM+A+   +PE  TL  IL+ F+  R+E++VRRT++ L
Sbjct: 311 QFADVVINQLYKHTQLENTFGINMLAVVNNRPELLTLKEILEYFILHRKEIIVRRTRFDL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA +RAH+L GL IA+ NLDEVV +IR S +P  AR  LM++                 
Sbjct: 371 RKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQ----------------- 413

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+++Q +AIL++RL +LTGL R+ I  E      +I    +IL S   +
Sbjct: 414 ---------FGLTQIQAQAILDMRLQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIV 464

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L +IK+EL  +K E    RRT+I+    ++  ED I RE+MVVTVS  GY+KR P+++YR
Sbjct: 465 LDLIKKELADLKAEFGDERRTQIMGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYR 524

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGG+G++ +  R++DFV  LF+ S+H + LFF++ G V+  KV+ +P     +RG A
Sbjct: 525 KQRRGGRGKTAMGTREDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRASRGTA 584

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L+ N+GE + T++  PE       L+V+ AT+ G V++  + D+ +    G IA+ 
Sbjct: 585 IVNLLNFNEGEDLATVLSVPEFSPG---LFVLMATRKGMVKKTDIMDYSRPRSGGLIALG 641

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE+++V       ++ L ++ G+ VRF  S +R   GR + GV+G++L K D V+ 
Sbjct: 642 LADGDELIAVRITDGSWNVFLGSQNGKSVRFLESDVRPM-GRLARGVKGMTLEKDDHVVG 700

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M ++ H +                                                    
Sbjct: 701 MEVLSHGNT--------------------------------------------------- 709

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ++T++E G+GKRT   ++ ++ R GKG+     +K N  G +VA+  V ++D++++++
Sbjct: 710 --LMTITENGYGKRTEIDEYPVNRRGGKGVITIKTTKRN--GKVVAILLVENDDELMIMT 765

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D+G LIR+PV  + + SR T+GV +    + E V    R+ E
Sbjct: 766 DRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETVTGAARLAE 807


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/899 (43%), Positives = 569/899 (63%), Gaps = 85/899 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I   +I++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y 
Sbjct: 6   ESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP 
Sbjct: 126 ARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R 
Sbjct: 186 HNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311
            + IE+  G R++IVV+EIP+QVNKA M+EKIAEL REK++  I DLRDE+  R G RVV
Sbjct: 246 RAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGVRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV R
Sbjct: 306 IDIRKDANASVILNNLYKLTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVVVRR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DRAH+L GL IA+ ++DE++  IR S       +E M+R           
Sbjct: 366 RTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETD----KEAMERLQ--------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        G   LSE Q +AIL++RL RLTGL RD I +E N L   I+E   IL
Sbjct: 413 -------------GRFKLSERQAQAILDMRLRRLTGLERDKIESEYNELIAYIEELRAIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKR 550
           +   +LL ++++EL  V++     RR+ I  G LD +EDED I  E +V+T+SH  Y+KR
Sbjct: 460 ADEEKLLELVREELTEVRERFGDERRSEIQLGGLDQIEDEDLIPEEQIVITLSHNNYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S YRAQ RGG+G  G+   +EDFV+ +  +STH +VLFF++ G VYK K + +P  S
Sbjct: 520 LPVSTYRAQNRGGRGVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVPELS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G  +IN + L   E I+T++   + E    + Y+VFATK+G V+R+ LS+F  INR
Sbjct: 580 RQSKGIPVINAIELENDESISTMIAVNDLEKE--DAYLVFATKNGIVKRSSLSNFSHINR 637

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+     DE+++V       D+LL T     +RF  S +R   GR + GV+GI+L 
Sbjct: 638 NGKIAINFRDEDELVAVRLTDGTKDVLLGTSHASLIRFKESKLRPL-GRTAAGVKGITLR 696

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+++ +A+                            TE+                   
Sbjct: 697 EGDELVGLAVA---------------------------TED------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  +L V+E G+GKRT   ++RISNR GKGI+   +++ N  G +V +  V   
Sbjct: 711 -----SEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKN--GDIVCITTVTGE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + I++V+++G +IR+ V++I    RA +GV +    +++ V +V +++E ++ DE E T
Sbjct: 764 EDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKVQE-DLEDELEGT 821


>gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489]
 gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489]
          Length = 851

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/898 (42%), Positives = 558/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D S +EP VL AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA IDN DI++D L+  I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+  G RE IVVTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKATFEEVQG-RESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN L++YT+LQ+ FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGRPQLLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  L++R           
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I +  DIL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R + IIK ELL VK++    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ANEERRMQIIKDELLEVKEKYGDERRSEINFAGGDLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + I L  K G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 LNGINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V + D D                                         
Sbjct: 695 ADDNDEVVGMVSVHNFDDD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+RI+NR GKG++   V+  ++ G LVA+  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVT--DKTGGLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           D+D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ ++ + VDE
Sbjct: 761 DSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDE 818


>gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
 gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
          Length = 886

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++ +ST
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824


>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
 gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
          Length = 887

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTAHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-IDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
 gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
          Length = 857

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/891 (43%), Positives = 553/891 (62%), Gaps = 58/891 (6%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR
Sbjct: 9   TAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RYTE R++
Sbjct: 69  VVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRME 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL+DL K+TVD   NYDGS  EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 129 QLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLS 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG +A I NP I  + L+ ++ GPDFPTG  I GR GI   Y TGRG + +R  + I
Sbjct: 189 EVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASI 248

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ IVVTEIPYQVNKA ++ KIAELVREK++  I+D+RDESDR G R+VI+LK
Sbjct: 249 ETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +  VILN LY+ T +Q+ F +NM+A+   +P+  TL   +  F+  R E+V RRT +
Sbjct: 309 RDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPKVLTLQDAIGHFIDHRREIVTRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L G  IA+  LD V+ +IR S  P  AR  LM   ++  +    + L  
Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQKMGLPL 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            + ++      + L+EVQ + IL LRL RLTGL RD I  E   +   I    +IL+S +
Sbjct: 429 PAIHS-QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKEILASEA 487

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL  +K++    RRT IV+   ++  ED IV ED+VVTVSH GY+KR  +S 
Sbjct: 488 EILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIKRTAVSQ 547

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG++G+  ++EDFV  LF+ S+   +LFF+  G VY+ KV+ +P G    RG
Sbjct: 548 YRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEGGRATRG 607

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L + E+IT I+     +   N   ++ AT+ G V+++ L ++  I   G IA
Sbjct: 608 KAIVNLLNLQENEQITAILSVKGFDDERN---ILMATRLGVVKKSPLREYANIRSGGIIA 664

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V       D+LL ++ G+ +RF     R   GR S GVRG++L   D V
Sbjct: 665 VNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPM-GRVSRGVRGMTLEDDDVV 723

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M ++                                    + S  G+           
Sbjct: 724 IGMEVI------------------------------------NPSATGST---------- 737

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E GFGKRT   ++R+ +R GKGI     ++ N  G +V +  V D + ++L
Sbjct: 738 ----IFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTDENDLML 791

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++D+G ++R+PV    +  R T+GV + +  ++ER+V+V ++ E +  DE 
Sbjct: 792 ITDQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEG 842


>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 886

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELGNDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++ +ST
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824


>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
 gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
 gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A
 gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
          Length = 889

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    D + DE                                     
Sbjct: 694 RLRDGDEVIGLDVA--DDDNQDE------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++ +E E ++  
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 907 EST 909
           E T
Sbjct: 821 EHT 823


>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 815

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/886 (42%), Positives = 555/886 (62%), Gaps = 86/886 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  +  V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y
Sbjct: 9   EEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K   + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R  L++G GNFGS+DGDP AA RYT
Sbjct: 69  KKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A IDNP I  + LM+ I+GPDFPTG +I+G+ GI+  Y TGRG I++R
Sbjct: 189 PHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIVGKDGIRETYETGRGKIIVR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +IV+TE+PY V K+ ++EKIAELVR+K I  I+DLRDESDR G R+V
Sbjct: 249 AKAEIEEHNG-RNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNGMRIV 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR  +  V+LN+LY +T +Q  F   M+AL    P+  +L  I++ +V  + +V+ R
Sbjct: 308 IELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVDVITR 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA +RAH+L GL IA+ ++DEV+ +IR S     A++ LM +           
Sbjct: 368 RTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDKFG--------- 418

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q++AI+++RL RLTGL R  + +ELN L  +I+E   IL
Sbjct: 419 -----------------LSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGIL 461

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   ++L IIK+EL  +KD+  + R+T IV  + +M+ ED +  ED VVT++H GY+KR+
Sbjct: 462 ADEKKVLEIIKKELKEIKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVVTMTHFGYIKRM 521

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  Y++Q+RGGKG SG+  R++DFV ++F  +TH  +LFF++ G VY  +   +P    
Sbjct: 522 PLDAYKSQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGR 581

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G A++N++ ++Q E+++ ++P    + S    YVV  TK G +++ ++ DF +I +S
Sbjct: 582 QAKGTAIVNLIQIDQDEKVSAVIPI---KKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKS 638

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+KLD  DE+++V     + +I++ T  G C+RF  + +R   GR + GV  ISL  
Sbjct: 639 GNTAIKLDDGDELINVMLTNGDREIIIGTANGYCIRFHENNLRPM-GRQARGVIAISLRD 697

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M                         LI+ D E                     
Sbjct: 698 DDYVVEMD------------------------LINEDNE--------------------- 712

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL V+E G+GKR+   ++R   R+GKGI AT +++  + G LV++  V++ D
Sbjct: 713 --------ILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQ--KTGKLVSIMSVSEKD 762

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++++S  G LIR  + +I    R   GV +      +RVVS  +I
Sbjct: 763 ELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKI 808


>gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 886

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++ +ST
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824


>gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 865

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/893 (42%), Positives = 550/893 (61%), Gaps = 84/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV +NK Y K A
Sbjct: 12  IIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMEDLGVHYNKAYKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YD + RMAQ+WSLR  +++GQGNFGSVDGD PAA RYTE RL
Sbjct: 72  RIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSVDGDSPAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  +L D+ KDTVDF+PN+D S QEP VL ++ PN+L+NG  GIAVGMATN+  HN+
Sbjct: 132 KRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSSGIAVGMATNMAPHNI 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +A IDN DI +  LM  ++GPDFPTGA I G  GI++A+ TGRG IV+R  S 
Sbjct: 192 TEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIYGYQGIRSAFETGRGRIVLRSRST 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE TS  +EQI+V+EIPY VNKAAM+EKIA +V EK+I  I+D+RDESDR+G R+V +LK
Sbjct: 252 IETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIRDESDREGMRIVFDLK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+LN L++Y+ LQS FSVN V L   +P    L  ++  FV  R EVV RRT++
Sbjct: 312 RDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGRPMTLNLKEMIMYFVEHRHEVVTRRTQF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN+A  RAH+L G  IA+ +LDEV+++IR S +PE AR  LM                 
Sbjct: 372 ELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMT---------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        +SE+Q +A+L+LRL RLTG+ RD I  E   +   I    +IL+S+ 
Sbjct: 416 ----------NFGMSEIQAKAVLDLRLQRLTGMERDKIIKEYEEIMALINRLKEILASKE 465

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + IIKQEL  +K+     RR+ IV    D+  ED I  E MV+T+SH GY+KR  LS 
Sbjct: 466 LRMEIIKQELDEMKERYGDKRRSDIVHASDDINIEDMIPEEQMVITISHEGYIKRTALSE 525

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG G  G   ++ DF   LF+ STH  +LFF+  G V+  KV+ +P G    +G
Sbjct: 526 YRTQGRGGVGSKGAGSKESDFTEHLFVASTHNYLLFFTEYGKVFWLKVYEIPEGGKTTKG 585

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N++ +  G+++ T++      D+   NN Y+V  T+ G +++  L  + +    G 
Sbjct: 586 RAIQNVIQIEPGDKVRTVINVKTLTDDDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGGI 645

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732
            A+ +   D +L V+  +  +++++  + G+ +RF  S +R   GR + GV+G++LA   
Sbjct: 646 NAITIHEGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPM-GRTAAGVKGVTLAHDK 704

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ +  V   D                           T+L                 
Sbjct: 705 DVVVGLVAVSSPD---------------------------TTL----------------- 720

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   L VSEKG+GKR+   D+R++NR GKG++  ++S+  + G LV++  VND  Q
Sbjct: 721 --------LVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISE--KTGDLVSILGVNDQYQ 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I++++  G  IR+ V+++R+  RAT+GV +      + + SV +   ++I+DE
Sbjct: 771 IMIINKSGITIRMAVSDLRVMGRATQGVRLIKIQDGDSIASVAKFEFTDIIDE 823


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    D + DE                                     
Sbjct: 694 RLRDGDEVIGLDVA--DDDNQDE------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++ +E E ++  
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 907 EST 909
           E T
Sbjct: 821 EHT 823


>gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A
          Length = 889

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A
 gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
          Length = 889

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A + L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/887 (43%), Positives = 550/887 (62%), Gaps = 88/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A VILN LY+ T+LQ+ F +N++AL   +P+   L   L  ++  ++ V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLVHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  +
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKE 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GY+
Sbjct: 457 ILANEEKVLEIIREELTEIKERFNDKRRTEIVTAGLETIEDEDLIERENIVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+    +DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               A+G  +IN+L + +GE I  I+P  E DE     LY+ F TKHG  +R  LS F  
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDEK----LYLFFTTKHGISKRTTLSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+++V        I++ TK G  +RFP S +R   GR + GV+GI
Sbjct: 633 IRNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREM-GRTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+ M I                                  L++DS V      
Sbjct: 692 TLTDDDIVVGMEI----------------------------------LEDDSHV------ 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L V+E G+GKRT + D+R  +R GKG++   +++ N  G LV V   
Sbjct: 712 -------------LIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENN--GRLVTVKAT 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +++++  G LIR+ + +I I  R T+GV +    + E V +V
Sbjct: 757 KGEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATV 803


>gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
 gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
          Length = 846

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/898 (44%), Positives = 567/898 (63%), Gaps = 72/898 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G  WNK Y K
Sbjct: 6   KEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQ + +R +LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K ++ LL DL K+TVD+  NYDG+ + P VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A IDN +I +D LM+ I GPDFP+ AVI   + +K AY TG+G I IR  
Sbjct: 186 NLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSELKKAYETGKGKIYIRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I       RE I+V EIPYQVNK+ +LEKIAELV+ KRI  I  LRDESD+ G RVVI
Sbjct: 246 AEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ++K  A ++++LN LY  T LQ  F +NMVAL+  +P+  +L  IL AF+  R  V+ RR
Sbjct: 306 DIKHDAISEIVLNNLYSLTQLQVSFGINMVALHHGQPKVMSLKDILSAFICHRRSVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-- 430
             + L KA +R HVL GL IA++N+D V+ +IR S +   A   L  +SW A+D+ ++  
Sbjct: 366 ILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNMRK 425

Query: 431 ---IDL-----IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
              IDL     +D +++T   +   Y ++ Q RAIL+LRL +LT L  D +  E +SL  
Sbjct: 426 SISIDLLNSEWLDKNNFT--KNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLK 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           ++++ +  L ++S L+ +I+QEL+S+K+E    RRT I   +  ++ E+ I + D+VVT+
Sbjct: 484 KMEKLIFTLKNKSSLMDVIRQELVSIKEEYSDIRRTEINNTIPSIDVENLINQRDVVVTL 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y  K
Sbjct: 544 SYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMK 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+RLP     +RG+ +IN+L L+  ERITTI+P  +         V  AT  G V++  L
Sbjct: 604 VYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQKYTKGHQ---VFMATSSGFVKKTAL 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +    G IA+ L+  DE++  +     N+++L T  G+ VRF  + +R   GR++V
Sbjct: 661 MEFSRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSM-GRSAV 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI L +GD+V+S+ I                                   KN SS  
Sbjct: 720 GVKGIHLLQGDRVVSLIIP----------------------------------KNKSS-- 743

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILT+++ GFGKRT   ++ + +RS KG+ +  V++ N  G +V
Sbjct: 744 -----------------ILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERN--GNVV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               V+ +DQI++++D G L+R+ V+E+ I  R TKGV++  TA DE VV ++R+ ES
Sbjct: 785 GAVQVSHDDQIMIITDAGRLVRIRVSEVNIIKRNTKGVMLIRTACDEHVVGLQRVVES 842


>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 889

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A
 gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A
 gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
 gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
 gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 887

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
          Length = 889

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +                                       D + E ++ E      
Sbjct: 700 EVVGL---------------------------------------DVAHENSVDE------ 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/901 (42%), Positives = 559/901 (62%), Gaps = 91/901 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+   K Y 
Sbjct: 5   EGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E++DG + +IDNP+  +  LM  I GPDFPTGA I+G+ GI+ AY TG+G I++R 
Sbjct: 185 HNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIMGKAGIRAAYETGKGKIIVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R  I+VTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R+VI
Sbjct: 245 NAEIEEENG-RHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+  V+LN LY++T LQ  F + M+AL   +P+   L  IL+ +V F++EV+ RR
Sbjct: 304 ELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYVEFQKEVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM+R            
Sbjct: 364 TIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q++AILE+RL RLTGL R  I  E N L  +I+    IL+
Sbjct: 412 --------------FELSEKQSQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +LL +IK+ELL +K+     R+++I + + +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEEKLLDVIKEELLEIKNRYSDERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y +QRRGGKG   +  +++DFV  L I STH+ VLFF++ G VYK + + +     Q
Sbjct: 518 ADTYSSQRRGGKGIQAMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQ 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  LIN++++   E+I T++   +++      ++   TK G V++  LS+F  + ++G
Sbjct: 578 AKGTNLINLIAIEPDEKIQTVLTVTDEKKEG---FLFMGTKQGIVKKTPLSEFKNLRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L V+    + +I++ T+ G  V+F    +R   GR + GV+ I+L + 
Sbjct: 635 LIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSM-GRTASGVKAINLKED 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +                         D EE                     
Sbjct: 694 DIAVCMDIAV-------------------------DGEE--------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L +SE G+GKRT   ++++ NR G G+    +S+  + G L        +D+
Sbjct: 708 -------LLVISENGYGKRTPIAEYKLQNRGGVGLITYKISE--KTGKLAGATICKVDDE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAE 907
           ++L++  G  IR+ V +I + SR+  GV +  T +DE+VV++ +I     +E+E  DEAE
Sbjct: 759 LMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIAKILSSDDQETESGDEAE 818

Query: 908 S 908
           S
Sbjct: 819 S 819


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/897 (43%), Positives = 561/897 (62%), Gaps = 90/897 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+VTE+PYQVNKA ++E+IAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY++T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMAR--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLVRLIAELRG 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G ++  +DED I +E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQ 667
               A+G  +IN+L L++ E I  ++P    ES +++  Y+VFATK G  +R+ LS F  
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ESEFSDERYLVFATKQGIAKRSPLSAFAH 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R   GR++ GV+ I
Sbjct: 634 IRNNGLIAIHLREGDELISVRLTDGKKHLIIGTKNGMLIRFPETDVRAM-GRSATGVKAI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  GD+V+ M                                EI    +D         
Sbjct: 693 TLDDGDEVVGM--------------------------------EILEDHHD--------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V++KGFGKRT + ++R+ +R GKG++  +V+  N  G +VAV  V
Sbjct: 712 ------------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKN--GPVVAVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERIRESE 901
             N+ +++++  G LIR+ V++I    R  +GV +   + +   E V +V ++ E E
Sbjct: 758 VGNEDVMVITTGGVLIRIAVSDISRTGRIAQGVKLIRLSGEDGHECVATVAKVPEEE 814



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 11/150 (7%)

Query: 763 RLISGDTEEITSLKNDSS----VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
           ++I  +  EI    ND      V G + +   ++L  +E  ++T++ KG+ KR     +R
Sbjct: 466 QIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYR 525

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R G+G++    ++ + +  L+     + +D ++  ++KG + +    EI    R  K
Sbjct: 526 SQKRGGRGVQGMHTAEDDFVEHLLI---TSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAK 582

Query: 879 GVVIFSTA---KDERVVSVERIRESEIVDE 905
           G+ I +     KDE + ++  I ESE  DE
Sbjct: 583 GLPIINLLELDKDEWINAMIPI-ESEFSDE 611


>gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
 gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
 gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
          Length = 889

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 878

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + NE   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A
 gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida]
          Length = 922

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/945 (42%), Positives = 577/945 (61%), Gaps = 123/945 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMA NIP HNL
Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+V+GC+A+I+N ++ +D LM  I GPDFPTGA+I GR GI  AY TGRGS+ +R  + 
Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKAE 247

Query: 256 IE---KTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           +E   KTS  RE  I+V E+PYQVNKA ++EKIAELV+EK++  I+ LRDESD+   R+V
Sbjct: 248 VEVDDKTS--RETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KRG S +++LN LY++T LQ+ F +NMVAL+  +P+   L  IL AF+  R EVV R
Sbjct: 306 IEIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+ +L+ R W   ++  ++
Sbjct: 366 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 425

Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +   D +         + I  +G  +L+E Q +AIL+LRL +LTGL    I  E  SL  
Sbjct: 426 EKAGDDAARPEWLEPEFGI-REGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLD 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E L IL+S  RL+ +I+ ELL+V+++    R   I     ++  ED I  ED+VVT+
Sbjct: 485 LIAELLFILASPERLMEVIRDELLAVREQYGDERPPEISASSAEINIEDLITPEDVVVTL 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  P++ Y AQRRGG+G+S   +++E+FV  L + +TH ++L FS+ G VY  K
Sbjct: 545 SHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTRGKVYWLK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  ARG+ +IN+L L +GERIT I+P  E     ++ YV FAT  G V++  L
Sbjct: 605 VYQLPEASRGARGRPIINLLPLEEGERITAILPVKE---YADDKYVFFATADGTVKKTSL 661

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PISAIRVF 716
           S F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF      P+  + + 
Sbjct: 662 SAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPMQPMLMS 721

Query: 717 A-----------------------------------------GRNSVGVRGISLAKGDQV 735
           +                                         GR + GVRGI L  GD+V
Sbjct: 722 SDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKV 781

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S+ +                          G+   +T+ +N                  
Sbjct: 782 VSLIVP------------------------RGEGAILTATEN------------------ 799

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                      G+GK T+  ++   +R  +G+R+    K++E G  V++  V+D DQI+L
Sbjct: 800 -----------GYGKGTALTEYPTKSRGTQGVRSI---KVDEDGK-VSIDQVDDTDQIML 844

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ GTL+R  V+E+ I  R T GV +  T +DE VV ++RI ES
Sbjct: 845 ITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAES 889


>gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1]
 gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1]
          Length = 896

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/909 (42%), Positives = 549/909 (60%), Gaps = 81/909 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H LL DL K+TVDF PNYDG+   P VL AR P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DGC+AVIDN DI +D L++ I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGAFINGRAGIIEAYKTGRGRIYM 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H E    G+R+ IV TEIPYQ+NKA ++EKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG + DV++N ++  T LQS+F +NMVAL   +P+   +  IL+ FV  R EVV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPQLLNIKQILECFVKHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+++AN+D V+ +IR SP    A+ +++  SW   D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVA 422

Query: 430 LIDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++         DD     G  DG  +LS  Q +AIL+LRL RLTGL  D +  E  +L 
Sbjct: 423 MLERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L+ILS+  RL+ +I++EL  VK+     RRT I+    D+   D I    MVVT
Sbjct: 483 ELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLTIADLIDEAPMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY K  PL  Y+AQRRGG+G+S   M+DED +  L + S+H +++ FS+ G VY  
Sbjct: 543 ISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-----------EDESSWNNL---- 646
           +V+ +P+ S  A+G+ ++N+L L +GE I+ ++P P           +D+ S + +    
Sbjct: 603 RVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDVSDDAIVEAS 662

Query: 647 -YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            Y+  AT +G V++  +  F +   +G IA+ LD  DE++ V     ENDI+L +  G+ 
Sbjct: 663 SYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDIMLVSSSGKT 722

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  S +R   GR + GVRGI L +  +V+S+ +                         
Sbjct: 723 IRFKESDVRAM-GRTAAGVRGIRLGEDAKVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                           +G+     C+    K   +      G G +      ++S R+G 
Sbjct: 757 --------------PQDGSAVLMACENGYGKRTLVEDFPVYGRGGQ-GVIGIQVSERNGP 801

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + A  V + +E               IIL++D+GTL+R  V E+    R T+GV +   
Sbjct: 802 VVGAAQVDETDE---------------IILITDQGTLVRTRVTEVSCQGRNTQGVTLIRL 846

Query: 886 AKDERVVSV 894
             DE +V +
Sbjct: 847 TNDEHLVGI 855


>gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622]
 gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622]
          Length = 942

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/921 (43%), Positives = 569/921 (61%), Gaps = 95/921 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M  +G   N+ Y K A
Sbjct: 24  LIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++++YDA+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+
Sbjct: 84  RVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  LL D+ K+TVDF PNYD S +EP+VL +++PN+LVNG  GIAVGM TNIP HN+
Sbjct: 144 ERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHNM 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G + +IDNP   +  LME I GPDFPTGA+I GR GI  AY TGRG + IR  S 
Sbjct: 204 TEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIITGREGIVRAYETGRGQVTIRARSD 263

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE +  GDRE I+ +EIPYQVNKA ++EKIAELVREK++  I+D+RDESDRQG R+VIEL
Sbjct: 264 IETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVIEL 323

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A + V+LN LY  TSL++ F   M+A++G +P    L  +L  F+A R +VV RRT+
Sbjct: 324 KRDAISQVVLNNLYAMTSLETTFGAVMLAIDGGQPRTLNLKEMLDRFIAHRRDVVTRRTR 383

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ--------------- 419
           Y L KA  R H++ GL +A   +D VV +IR S +P+ AR  LM                
Sbjct: 384 YELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERFATL 443

Query: 420 RSWNASDIKDLIDLI------DDSSY---TIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +  +    K  ++L+      ++ SY       +G  + SE Q + ILE+RL RLTGL R
Sbjct: 444 QRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGF-SEGQAQNILEMRLQRLTGLQR 502

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           +++  EL  L  +I    DIL++   LL +IK EL+ +++     RRT I   + +M  E
Sbjct: 503 EELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGDKRRTEITGAVDEMTSE 562

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E MVVT+SH GY+KR PL+ YRAQ+RGG+G++G   +++DFV+ LF+ STH  ++
Sbjct: 563 DLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKLFVASTHAYLM 622

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLY 647
             ++ G +Y  KV ++P  S  +RGKA++N++   +GER+  ++    FPE      N Y
Sbjct: 623 PITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGERLAQVLVTRDFPE------NRY 676

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V F TK G V+R  LS F  +  SG IA+ +D  DE+++V       DILL+T  G  +R
Sbjct: 677 VFFVTKRGVVKRTDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDILLSTASGMSIR 736

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           FP + +R   GR + GV+GI+L  GD+V+  A V+  DA                     
Sbjct: 737 FPETEVRSM-GRQAYGVKGITLEDGDEVVG-ADVVETDA--------------------- 773

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           ILTV+E G+GKRT   ++R   R GKGI
Sbjct: 774 -------------------------------AILTVTENGYGKRTQEAEYRQQGRGGKGI 802

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
              D+      G +V +  V + D+++LV++ G LIR+ V EI +  R T+GV + +   
Sbjct: 803 --IDIKTTERNGKVVGLLQVKEADEVMLVTNGGMLIRMRVKEISVIGRNTQGVRLIALEN 860

Query: 888 D-ERVVSVERIRESEIVDEAE 907
           + E+V+++ ++ ES   DE+E
Sbjct: 861 EQEKVMAISKLPES---DESE 878


>gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900]
 gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
 gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
 gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
          Length = 904

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/896 (43%), Positives = 555/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           KV+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DAD +         SA   L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/882 (43%), Positives = 557/882 (63%), Gaps = 87/882 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  +  I+V+E+PYQVNKA ++E+IAELVRE++I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   +   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G ++ ++DED I  E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P    E+  +  Y+VF+TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ETFDDERYLVFSTKQGIAKRSSLSSFAHI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+V+SM                                EI    +D          
Sbjct: 693 LDDNDEVVSM--------------------------------EILEDHHD---------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V++KGFGKRT + ++R+ +R GKG++  +V++ N  G++VAV  V 
Sbjct: 711 -----------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERN--GSVVAVTTVV 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDE 889
            N+ +++++  G LIR+ V++I    R  +GV +I  + +DE
Sbjct: 758 GNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDE 799


>gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
 gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
          Length = 831

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/885 (42%), Positives = 546/885 (61%), Gaps = 85/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+  N  + K A
Sbjct: 7   IIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTAHKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YD + RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+
Sbjct: 67  RIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK +  LL D+ K+TVD + N+D + +EP VL  R PN+L+NG  GIAVGMATN+P HNL
Sbjct: 127 QKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNMPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG +  I+N DI ++ L++ I+ PDFPTG  I G  G++ A+ TGRG IVIR  ++
Sbjct: 187 TEVVDGTIQYIENNDITIEELIKTIKAPDFPTGGTIYGYDGVREAFLTGRGRIVIRAKAN 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +G RE I+VTEIPYQVNKA M+ K AE+V +K++  I+ +RDESDR G R+V  LK
Sbjct: 247 IEEVNG-RECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRIVYILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++LN+LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R +VVVRRT++
Sbjct: 306 RDAVPNIVLNKLYKYTALQSSFSVNNIALVKGRPQMLNLKEMIHHFVEHRHDVVVRRTQF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DRAH+L GL IA  N+DEV++IIR S + + AR  L+++               
Sbjct: 366 ELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQ--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AI+E+RL +LTGL +D +R E N L + I +  DIL  + 
Sbjct: 411 -----------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDILDKKE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + IIK EL+ +KD+    RR+ I     D   ED I  E +V+T+SH GY+KR PL  
Sbjct: 460 RRMEIIKLELVEIKDKYGDERRSNIEYAGGDFSMEDMIPDEQVVITISHAGYIKRTPLIE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG G+     RDEDF+ DLF+ + H  +LFF+  G  +  +V+ +P GS  A+G
Sbjct: 520 YKTQNRGGVGQKASTTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTAKG 579

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N++++ Q +++   +   +  DE   NN YV+ ATK G V++  L  + +   +G 
Sbjct: 580 RAIQNLINIEQDDKVQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
            A+ +   DE+L  +     + ++L  K G+ +RF  S  R   GR + GVRGI+LA   
Sbjct: 640 NAINVREDDELLEAKLTNGNSHVMLAVKSGKAIRFEESKTRPM-GRGASGVRGITLADSK 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M  V   DA+                                             
Sbjct: 699 DEVVGMVAVNDMDAN--------------------------------------------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL VSE G+GKR+S  D+RI+NR GKG++   +S  ++ G LV +  V D D 
Sbjct: 714 -------ILVVSENGYGKRSSLDDYRITNRGGKGVKT--ISITDKTGKLVTIKTVTDTDD 764

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++++  G  IR+ V  +R+  RAT+GV + +   D+ + +V ++
Sbjct: 765 LMIINKSGIAIRMEVAALRVMGRATQGVRLINLKGDDTIAAVAKV 809


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKEADVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +   AD D  ++                                    
Sbjct: 694 RLRDGDEVIGLDV---ADDDNQDK------------------------------------ 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++ +E E ++  
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 907 EST 909
           E T
Sbjct: 821 EHT 823


>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A
 gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 887

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  ++EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
 gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
          Length = 889

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 554/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
          Length = 876

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/735 (49%), Positives = 506/735 (68%), Gaps = 15/735 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A
Sbjct: 8   IAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL DL K+TVDF PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 AKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A I++ +I ++ LME I GPDFPT A I GR GI+ AY TGRG I IR    
Sbjct: 188 TEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIYIRARGE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 IETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+  TL  I++AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKEIIEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++  
Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAMLERA 427

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + + I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEAEFGI-RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL++++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIHILQSAERLMEVIREELVAMRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR++ GVR
Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRSASGVR 722

Query: 726 GISLAKGDQVISMAI 740
           GI LA+GD+V+S+ +
Sbjct: 723 GIRLAEGDKVVSLIV 737


>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
          Length = 886

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL R+ I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERNKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELGNDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++ +ST
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824


>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 886

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/885 (44%), Positives = 555/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+A+IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/890 (43%), Positives = 551/890 (61%), Gaps = 86/890 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y 
Sbjct: 4   EGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GIK AY TGRG +VIR 
Sbjct: 184 HNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKRAYETGRGKVVIRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDRQG R+VI
Sbjct: 244 KAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+V+LNQLY++T +Q  F + M+AL   +P   +L  +LK ++ F+EEV+ RR
Sbjct: 304 ELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  LM + +N         
Sbjct: 364 TQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSK-FN--------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL+++L RLTGL R+ I  E   L   IK   +ILS
Sbjct: 414 ----------------LSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  LL IIK EL  +K +    RRT IV G   D++ ED I  +D+V+T++H GY+KR+
Sbjct: 458 NKDLLLKIIKDELNEIKIKYGDERRTEIVHGDGNDIDIEDLIEEKDVVITLTHAGYIKRL 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y AQRRGG+G   +  +++DFV  +   STH ++LFFS+ G VYK K +++P    
Sbjct: 518 PVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  LIN+L L + E+I  ++   E +      Y++  TK+G +++  L  +  I ++
Sbjct: 578 TAKGMNLINLLPLEKNEKIQNVIYLKEFKPDR---YLIMGTKNGLIKKTSLDQYSSIRKN 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++SV   T + +I+  TK G  ++F  +  R   GRN+ GV+ I+L  
Sbjct: 635 GLNAINLRENDELISVRVTTGDCNIIYATKNGYAIKFDENDARPM-GRNATGVKAITLRD 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM +                                             S+ER  
Sbjct: 694 DDEVVSMEVA--------------------------------------------SDERD- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT   ++ +  R GKG+    +S+  + G L+    V D D
Sbjct: 709 --------LLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVEDED 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++D G  IR+ V++I + SR   GV +  T ++E+VV++ ++  +E
Sbjct: 759 ELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITE 808


>gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 889

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812



 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 34/239 (14%)

Query: 683 EILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           E L  E    E  I++T      + R P+S  R    R   GV+G++  + D V  +  +
Sbjct: 494 EDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTL 552

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEIT------------SLKNDSSVEGNISEER 789
              D      + +  +     +L   +  E++             L+ND  +   I+   
Sbjct: 553 STHD-----HVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA--- 604

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK---GIRATDVSKINEIGALVAVFP 846
            ++L+ ++ F++  +++G  KR++  +F   NR+GK     R  D         L+AV  
Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD--------ELIAVRL 656

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +  + I++ +   +LIR P + +R   R   GV   +  + + VV ++ +  +  VDE
Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLD-VAHANSVDE 714


>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 893

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 15  INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 75  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 135 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 195 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 255 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 315 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 375 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 421 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 468

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  ++EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 469 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPV 528

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 529 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 588

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 589 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 646

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 647 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 705

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 706 EVVGLD-VAHANS-VDE------------------------------------------- 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 721 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 772

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 773 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 818


>gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
 gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
          Length = 899

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/918 (42%), Positives = 555/918 (60%), Gaps = 83/918 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M Q+  ++NK Y K A
Sbjct: 5   VSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR  +++GQGNFGS+D DP AA RYTE R+
Sbjct: 65  RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTEVRM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K  H +L DL KDTVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 125 TKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  DNP+I  + L   I GPDFPTG +I GR+GI +AY TG+G + IRG  H
Sbjct: 185 TEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIRGRYH 244

Query: 256 IEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE  S      DRE+IV TEIPYQ NKA ++E+IAELVR+K+I  I+++RDESD+ G R+
Sbjct: 245 IEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDGMRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG  A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EVV 
Sbjct: 305 AIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQEVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKA+ R H+L GL +A+AN+D+++  I+ S N   AR +L+ + W++  +  +
Sbjct: 365 RRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGTVVAM 424

Query: 431 IDLIDDSS------------YTIGSD----------GTMY-LSEVQTRAILELRLARLTG 467
           +      +            Y  G D          G  Y LS  Q  AILE++L RLTG
Sbjct: 425 LQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLHRLTG 484

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L +D +  E   L  +I E   IL+   +L+ +IK E+L + +     RRT IV+   D 
Sbjct: 485 LEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSRTDF 544

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  + +V+TVS  GY K  P+S Y AQ+RGGKG+S   M+++D +  L + STH 
Sbjct: 545 SREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHA 604

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +VL F+  G V+  + + +PI S  ARG+ L+NI+ L   E +TTI+P P      ++ +
Sbjct: 605 TVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEIDSHF 664

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V FAT +G V+R +LS F  I  +G IA+ L+  D+++S      E  ++L    G+ +R
Sbjct: 665 VFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGKAIR 724

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +  RV  GR + GVRG+ +A  + + S+ ++                          
Sbjct: 725 FDENDARVM-GRTAKGVRGMRIANDEFIKSLVVI-------------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                              EE  QE       IL   E G+GKRT   +F   NR G G+
Sbjct: 758 -------------------EEDVQE-------ILIACENGYGKRTPVDEFNAQNRGGGGV 791

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  GALV    V   D IIL+S+KGTL+R PV ++  + R T+GV +   +K
Sbjct: 792 IAIKTSERN--GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLSK 849

Query: 888 DERVVSVERIRESEIVDE 905
           DE +V++ R+ ++   DE
Sbjct: 850 DEALVAMARVEDTGEEDE 867


>gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 878

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 848

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/885 (42%), Positives = 552/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM+ +GV   K Y K A
Sbjct: 17  IIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++YDA+ R+AQDWS+R  L++GQGN+GS+DGDPPAA RYTE RL
Sbjct: 77  RIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  +L D+ KDTVDF+ N+D S +EP VL  R PN+LVNG  GIAVGMATN+  HNL
Sbjct: 137 KKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG VA IDN +I++  LM+ I+GPDFPTG +I G  G+K A  TGRG +V+R  + 
Sbjct: 197 SEVVDGTVAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKEACETGRGRVVMRAKAE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE T   RE I+VTEIPYQVNKA M+++ AELV EK+I  I+++RDESDR+G+RVV ++K
Sbjct: 257 IETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+YT+LQ+ FSVN +AL   +P    L  ++  FV  R EVV+RRTK+
Sbjct: 317 RDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIHEFVEHRHEVVIRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  RAH+L G  IA+ +LDEV+++IR S  PE AR  LM+R               
Sbjct: 377 ELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMER--------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q RAIL++ L RLTGL RD I+ E N L   I+   ++LS   
Sbjct: 422 -----------FALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEG 470

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + IIK ELL +KD+    RR+ IV    DM  ED I  E++V+T+SH  YVKR PLS 
Sbjct: 471 LRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRTPLSE 530

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG+G  G   R+EDF   +   S H  +LFF+  G  +  + + +P GS  +RG
Sbjct: 531 YKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRG 590

Query: 616 KALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +AL NI+++ + E+I   +     +D+    N +++  TK G +++  L  + +   +G 
Sbjct: 591 RALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGI 650

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
            A+ ++  D+++        ++I++  + G+ +RF  S +R   GR + GVRGI+LA + 
Sbjct: 651 NAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM-GRTATGVRGITLAHEK 709

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M                          IS +  E+T                   
Sbjct: 710 DEVVGM--------------------------ISVNNPEVT------------------- 724

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSEKG+GKRT   D+R++NR GKG++  +V+  ++ G LVA+  V D++ 
Sbjct: 725 -------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DKTGELVAIKDVTDSED 775

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++++  G +IR+ V ++R+  RAT+GV + +   ++ + S+ ++
Sbjct: 776 LMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITKV 820


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVCLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    D + DE                                     
Sbjct: 694 RLRDGDEVIGLDVA--DDDNQDE------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++ +E E ++  
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 907 EST 909
           E T
Sbjct: 821 EHT 823


>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 843

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/889 (42%), Positives = 556/889 (62%), Gaps = 88/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  L+ D+ KDT+D++ NYDGS  EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ +NP I    LME I GPDFPTGA I+G +GI+ AY TG+GSI 
Sbjct: 183 IPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIVGVSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +G + +I+VTEIPYQVNKA ++EKIAELVR+K++  I DLRDESDR G R
Sbjct: 243 IRAKAEIEDNNG-KPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +A+V+LN LY+ T+LQS F +NM+AL   +P+  ++  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVDGRPKVLSIKEVLYHYLEHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ +IR S   E AR+ LM+          
Sbjct: 362 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLME---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L  +IKE   
Sbjct: 412 ----------------NFSLSHDQAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++EL  ++D  +  RRT I  G   MEDED I R+++V+T+SH GY+K
Sbjct: 456 ILADDEKVLAIIREELTDIRDRYNDERRTIITFGEDSMEDEDLIPRQNVVITLSHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR+Q+RGG+G  G+   D+DFV  LFI ++H  +LFF++ G VY+ K + +P  
Sbjct: 516 RIPLSTYRSQKRGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSF 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           +  A+G  +IN+L + + E ++T++P  E DE      Y+ F TK G  +R  L  F  I
Sbjct: 576 NRTAKGIPIINLLQIEKDEYVSTVIPVDEFDEER----YLFFMTKDGIAKRTALKVFSNI 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R G  A+ L   D +  V       +I+  T+ G  +RF  + +R+  GR + GV+G++
Sbjct: 632 RRGGLFAINLREGDALHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLM-GRTATGVKGVT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + DQV+ M                             DT E                 
Sbjct: 691 LQENDQVVGM-----------------------------DTIE----------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  ++Q +L V+EKGFGKRT   ++RI  R GKGI+  +++  N  G L+++  V+
Sbjct: 705 -------EDQAVLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNITDKN--GPLISLKVVS 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D+  ++++++ G +IR+ V EI    R T+GV +     +E V +V R+
Sbjct: 756 DDHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVARV 804


>gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 848

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/885 (42%), Positives = 552/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM+ +GV   K Y K A
Sbjct: 17  IIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++YDA+ R+AQDWS+R  L++GQGN+GS+DGDPPAA RYTE RL
Sbjct: 77  RIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  +L D+ KDTVDF+ N+D S +EP VL  R PN+LVNG  GIAVGMATN+  HNL
Sbjct: 137 KKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG +A IDN +I++  LM+ I+GPDFPTG +I G  G+K A  TGRG +V+R  + 
Sbjct: 197 SEVVDGTIAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKEACETGRGRVVMRAKAE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE T   RE I+VTEIPYQVNKA M+++ AELV EK+I  I+++RDESDR+G+RVV ++K
Sbjct: 257 IETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+YT+LQ+ FSVN +AL   +P    L  ++  FV  R EVV+RRTK+
Sbjct: 317 RDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIHEFVEHRHEVVIRRTKF 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  RAH+L G  IA+ +LDEV+++IR S  PE AR  LM+R               
Sbjct: 377 ELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMER--------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q RAIL++ L RLTGL RD I+ E N L   I+   ++LS   
Sbjct: 422 -----------FALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEG 470

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + IIK ELL +KD+    RR+ IV    DM  ED I  E++V+T+SH  YVKR PLS 
Sbjct: 471 LRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRTPLSE 530

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG+G  G   R+EDF   +   S H  +LFF+  G  +  + + +P GS  +RG
Sbjct: 531 YKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRG 590

Query: 616 KALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +AL NI+++ + E+I   +     +D+    N +++  TK G +++  L  + +   +G 
Sbjct: 591 RALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGI 650

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
            A+ ++  D+++        ++I++  + G+ +RF  S +R   GR + GVRGI+LA + 
Sbjct: 651 NAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM-GRTATGVRGITLAHEK 709

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M                          IS +  E+T                   
Sbjct: 710 DEVVGM--------------------------ISVNNPEVT------------------- 724

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSEKG+GKRT   D+R++NR GKG++  +V+  ++ G LVA+  V D++ 
Sbjct: 725 -------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DKTGELVAIKDVTDSED 775

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++++  G +IR+ V ++R+  RAT+GV + +   ++ + S+ ++
Sbjct: 776 LMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITKV 820


>gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|294837788|ref|ZP_06782471.1| DNA gyrase, A subunit [Acinetobacter sp. 6013113]
 gi|294858569|ref|ZP_06796338.1| DNA gyrase, A subunit [Acinetobacter sp. 6013150]
 gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058]
 gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
          Length = 904

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/896 (43%), Positives = 553/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           KV+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DAD +         S    L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSTDSSLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|294840722|ref|ZP_06785405.1| DNA gyrase, A subunit [Acinetobacter sp. 6014059]
 gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056]
 gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059]
 gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
 gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2]
 gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 904

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/896 (43%), Positives = 554/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           KV+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DAD +         SA   L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 903

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/914 (43%), Positives = 568/914 (62%), Gaps = 52/914 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M  +G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-------- 422
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W        
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 423 ------NASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                  AS  +DL   + LI          G   L+EVQ   ILE+RL RLTGL ++ +
Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------KGFYQLTEVQASQILEMRLHRLTGLEQEKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I
Sbjct: 474 TDEYKQLLEVIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+
Sbjct: 534 SPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V+   V++LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT+
Sbjct: 594 SSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADNRYVFFATR 650

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +
Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRGI L KG++V+S+ IV    A  +  +               D   I 
Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSL-IVAERAAGVESDVEEESVEDVVETTDVADAAVIE 768

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             +ND +                  +ILT +E G+GKRT   ++    R  +G+     +
Sbjct: 769 VAENDDTA-----------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 811

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +
Sbjct: 812 ERN--GKLVRAVLLGGTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQA 869

Query: 894 VERIRESEIVDEAE 907
           VER+  S  +DE E
Sbjct: 870 VERLDAS--LDEVE 881


>gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
 gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
          Length = 850

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/893 (42%), Positives = 556/893 (62%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV     +
Sbjct: 3   EGEKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A I+NP+I++D L+  I+ PDFPTG VI G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGGVIFGYEGVKEAFHTGRGRVVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+  G +E I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKAIIEEVQG-KECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YTSLQS FSVN +AL   +P++  +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALVNGRPQQLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA DRAH+L GL IA  N+DEV+++IR S +P+ AR  LM+R           
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E N +   I +  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDIIATIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  VK +    RR+ I      +  ED I  E +V+T+SH GY+KR 
Sbjct: 456 GDKERRMSIIKEELQEVKTKYGDARRSEINYAGGSLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 ALSEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++++Q +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINISQEDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + + L  K G+ +RF  S  R   GR + GVRG+SL
Sbjct: 636 TNGINAIGVREGDELLEAKLTTGTSQVFLGLKSGKAIRFEESKTRPM-GRGASGVRGVSL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M I +H + D+                                        
Sbjct: 695 ANDQDEVIGM-ITVHNEEDH---------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R++NR GKG++   +++  + G LVA+  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITE--KTGGLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+D +++++  G  IR+ V ++R+  RAT+GV + +  +++ + +V ++ + E
Sbjct: 761 DSDDLMIINKSGIAIRLGVEDLRVMGRATQGVKLINIRENDSIAAVAKVMKEE 813


>gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 878

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A
 gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 878

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2]
 gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2]
          Length = 920

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/942 (42%), Positives = 566/942 (60%), Gaps = 109/942 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF  NYDG+ + P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDGC+A+ID+  +  D LME I+GPDFPT  +I GR GI  AY TGRG + +R  + 
Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARAE 247

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE T    +E I+VTEIPYQVNKA ++EKIAELV++K+I  I +LRDESD++G R+VIEL
Sbjct: 248 IEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +RG +A+V+LN LY+ T ++S+F +N VAL   +P+   L  +L AF+  R EVV RRT 
Sbjct: 308 RRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRTV 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR++AH+L GLA+A++N+D V+ +I+ SP+   A+ +L+ + W   D+  +++  
Sbjct: 368 YELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLERA 427

Query: 435 D----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y +  DG  +LS  Q +AIL+LRL +LTGL R+ + N+   L  +I
Sbjct: 428 GGENAARPDGLDEQYGL-VDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL+ +I++EL +V++E    RR+ IV    D   ED I  E +VVT+S+
Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  P+  YRAQ+RGG+G+S   ++D+D+V  L +  TH ++L F++ G V+  + +
Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTNAGKVFWLRTF 606

Query: 605 RLPIGSPQARGKALINIL-SLNQGERITTIMPF-------------------------PE 638
            LP G   +RGK ++N+L +L   ERIT I+                            E
Sbjct: 607 ELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGGEEDIVDVDDAADVIE 666

Query: 639 DESSWNNL---------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           DE+  +                 ++  AT  G V+R  L++F +   SG IA+KL   + 
Sbjct: 667 DETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEH 726

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V       DI+L  + G+ VRF  S +RV + R + GVRGI LA+G  VIS+     
Sbjct: 727 LVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDVISLI---- 781

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    + EE  Q        ILT 
Sbjct: 782 -----------------------------------------VPEENGQ--------ILTA 792

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE G+GKRT   D+    R G+G+ A  +++ N  G LV    V   + I+L+S++GTL+
Sbjct: 793 SEHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLV 850

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           R  VN++  + R T+GV +   A  E +  +  I E E V+E
Sbjct: 851 RTGVNQVSTSGRNTQGVRLIRLADGEALCGLATIPELEGVEE 892


>gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
 gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
 gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
 gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
          Length = 887

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  ++EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDE 811


>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
          Length = 886

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/885 (44%), Positives = 555/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 878

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VKD  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKDRFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
 gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
          Length = 802

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/888 (43%), Positives = 555/888 (62%), Gaps = 88/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +EKGI  V+I D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MGV  NK Y
Sbjct: 2   KEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG++A+YD L RMAQD+S+R  L++GQGNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVDF PNYDGS +EPVVL  R PN+L+NG  GIAVGMATNIP
Sbjct: 122 EVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  V +IDNP    + ++  I+GPDFPT  +I G+  I  AY TG+G I +R
Sbjct: 182 PHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E T+  +E +VVTE+PYQVNKA ++EKIA L R+K+I  I DLRDESDR G R+V
Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG +AD+I+NQLY++T ++  + +N+V +   KP+  TL  +L+ F+  R+ VV+R
Sbjct: 302 IELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+LL KA DR H+L GL  AV N+DEVV +I+ S N   A+ +LM R           
Sbjct: 362 RTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q +AIL++RL RLTGL  + +RNE       I+    IL
Sbjct: 411 ---------------FELSDKQAQAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++S L+GIIK+EL+ +K++    RRT+IV    ++  ED I  +++VVT+S+ G++KR 
Sbjct: 456 NNKSVLMGIIKEELIDIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +++Q+RGGKG++G     EDF+ D+ + + H++++FF++ G ++  KV+ LP  + 
Sbjct: 516 PLSNFKSQKRGGKGKTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELAR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GK + N++SL++ E++  ++   E +    + Y+   TK G V++  L  F    RS
Sbjct: 576 DAKGKYIANLISLDKDEKVAAMISTKEFD---RDRYIFMCTKEGIVKKTSLDAF-SSGRS 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+KL   DEI+     ++ + I ++T+ G+C++F  S +R   GRN+ GV+GI+L K
Sbjct: 632 GIIAIKLRDGDEIVDASLISKNDSIFISTRKGKCIQFNSSEVRNM-GRNATGVKGITLTK 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM  V                         GD                       
Sbjct: 691 DDKVVSMEAV------------------------KGDP---------------------- 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILTV+ KGFGK +   D+RI +R GKGI+ + V++    G +V    V   D
Sbjct: 705 -------LILTVTTKGFGKSSLITDYRIQSRGGKGIKLSKVTE--RTGEIVGARQVKLED 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++L+S    +IR+ V++I I  R T+GV +     D+ ++S + IRE
Sbjct: 756 DVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGL--DDEIISFDVIRE 801


>gi|21228522|ref|NP_634444.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
 gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
          Length = 900

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/888 (43%), Positives = 560/888 (63%), Gaps = 92/888 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+T + I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+  +K Y K 
Sbjct: 17  GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+YD + RM QD+SLR  LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 77  ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+ K+TV F PNYDGS +EP VL AR PN+L+NG  GIAVGMATN+P HN
Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV+DG + +I+NP+  +  LM +I+GPDFPTGA ILG  GI++AY TGRG I +R V+
Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 256

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I++   DR+QI+VTE+PYQVNKA ++E IA+LVREK I  I+DLRDESDR+G RVV+EL
Sbjct: 257 EIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVEL 316

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            RG + +V+LNQLY++T + + F V  +AL   KP+   L  +L+ ++ +R E++ +RT 
Sbjct: 317 SRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTL 376

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + A++                 LI
Sbjct: 377 YDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQ----------------GLI 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D+ +          L EVQ +AILE+RL RLTGL    I +EL +L  +I+E   IL+S 
Sbjct: 421 DNFA----------LDEVQAKAILEMRLQRLTGLETRKILDELEALVKQIEELRKILASD 470

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
                II+ EL  +KD+    RRTRIV    ++ DED I  ED+VVT+++ GY+KR+PL 
Sbjct: 471 ELKYEIIRTELSELKDKYGDIRRTRIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLD 530

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  QRRGG+G  G+ M++EDFV +LFI STH  +LFF++ G +Y +KV+ +P GS Q+R
Sbjct: 531 TYTMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSR 590

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           GKA++N+L L +GE +  ++    F ED+      Y+  AT+ G V++  LS+F    R+
Sbjct: 591 GKAIVNLLELQEGEMVNAMISVEEFAEDK------YLFMATRAGTVKKTPLSEFRNPRRA 644

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-A 730
           G IA+ LD  DE++ V     + +I++ +K G+ +RF    +R   GR + GVRG++L  
Sbjct: 645 GIIAVSLDEGDELVKVLLTDGKQEIMMVSKKGKAIRFSEEDVRPM-GRTARGVRGMTLEG 703

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+S+ +V                            +E T+L               
Sbjct: 704 PDDEVVSLDLV----------------------------DETTTL--------------- 720

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     LTV++ GFGKRT    + +  R GKG+  T V+ +   G +  V  V ++
Sbjct: 721 ----------LTVTDNGFGKRTEYSQYPVHRRGGKGV-ITIVTNLRN-GFVSNVKSVAED 768

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D+++  S +G +IR+P  +I I  R T+GV + +    ++V  + RI+
Sbjct: 769 DELMFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIK 816


>gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
 gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE]
 gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
          Length = 904

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/896 (43%), Positives = 553/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           KV+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DAD +         S    L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSTDSSLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4]
 gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4]
          Length = 960

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/922 (42%), Positives = 567/922 (61%), Gaps = 54/922 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++ NKKY KCA
Sbjct: 30  MISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKCA 89

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G  MG YHPHG++AIYDA+ R+AQ +S+R  L++GQGNFGSVDGDPPAA RYTE RL
Sbjct: 90  KVVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARL 149

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+  DTVDF PNYD S  EP VL ARYPN++VNG  GIAVGMATNIP HNL
Sbjct: 150 MKIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHNL 209

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+ +++NP   L  ++E ++GPDFPT   I G++GI NAY TGRG  ++R    
Sbjct: 210 TEVINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIYGKSGIANAYRTGRGKFLMRAKCS 269

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  SG RE I+V+EIPYQVNK  ++++IAELV EK I DI+D+RDESDR G R+VIELK
Sbjct: 270 RENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIELK 329

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++LNQL+++TS+Q  FS+  +A++  +P    L   ++AF+  R +VV RRT +
Sbjct: 330 RTAQPEIVLNQLFKHTSMQESFSMIFLAVHNGRPVELPLPDAIRAFIDHRVDVVRRRTAF 389

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR------SWNASDIKD 429
           LLNKARDR H+L+G  IA+ +LD V+R IR S +   AR  L +       S   +++  
Sbjct: 390 LLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELAG 449

Query: 430 LIDLIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +   +D S Y I +D          GT+ LS  Q   ILEL+L RLT L  D++  EL  
Sbjct: 450 VT--LDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQ 507

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E   IL+S  +L  +I +EL  V+++    RRT+I++   ++  ED I  E + 
Sbjct: 508 VRENIAEYESILASDKKLRRVIIKELEEVREKYGDVRRTQIIDESSELTLEDLIADEQVA 567

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KR P+S YR QRRGG GR G+  R+EDFV  L + STH  +L F++ G V+
Sbjct: 568 VTVSHSGYLKRTPISTYRQQRRGGTGRIGMKTREEDFVAQLIVDSTHAYLLCFTNSGRVF 627

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K++ +P      +GK + ++L+L  GE++   +P    E +    Y+ FAT+ G V++
Sbjct: 628 WLKIYEIPDVLAAGKGKHIASLLALQPGEKVVAYLPVRNLEDASK--YIFFATREGIVKK 685

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------ISA 712
             L DF  +   G IA+ +D  DE+++V   + E+ + L T+ G  VRF           
Sbjct: 686 TPLPDFSNVMARGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKYDPEKSGG 745

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV---LHADADYDERICYMK------------- 756
           +R   GRN+ G +GI+L KGD VI  A+       D   DE     K             
Sbjct: 746 LRPM-GRNAGGNKGITLKKGDYVIGAAVTDSREKRDGQRDELAVATKLEKELAAVRAEIA 804

Query: 757 --HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ---ELKLKEQFILTVSEKGFGKR 811
                 Q+   S + EE  + +    V   + E+ C+   +L L    IL+V+E G+GKR
Sbjct: 805 AAEAELQKARDSKNEEEAKAARKALDV---VEEKLCKLDGKLGLSPCLILSVTENGYGKR 861

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   ++R++NR G G+     S   + G + ++  V++  +++ +S  G +IR+  N IR
Sbjct: 862 TDVEEYRLTNRGGSGVINMKASA--KTGKVSSIQLVDETTELMAISQFGKIIRIDTNTIR 919

Query: 872 IASRATKGVVIFSTAKDERVVS 893
            A R+T+GV + +   D++V +
Sbjct: 920 AAGRSTQGVKLLNLDTDDKVAA 941


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/885 (42%), Positives = 549/885 (62%), Gaps = 86/885 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K Y 
Sbjct: 6   EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYTE
Sbjct: 66  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++DG + +IDNP++ +  LM  I+GPDFPTGA I+G+ GI+ AY TGRG IV+R 
Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +IVVTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R+V+
Sbjct: 246 DAEIEEENG-RHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V+LN LY++T LQ  F V M+AL   +P    +  IL  ++ +++EV+ RR
Sbjct: 305 ELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM++            
Sbjct: 365 TVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q  AILE+RL RLTGL R+ I  E   L  +I+    IL+
Sbjct: 413 --------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +LLG+IK EL  +K +    RRT+I + + +++ ED I  ED+V+T+++ GY+KR+ 
Sbjct: 459 SEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRIS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y AQRRGGKG   +  +++DFV  + I STH+ VLFF++ G VYK + + +P    Q
Sbjct: 519 ADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQ 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  +IN++++   E+I T++   + +      ++  ATK+G V++  +S+F  + ++G
Sbjct: 579 AKGTNVINLIAIEPDEKIQTVLTVSDGKKEG---FLFMATKNGIVKKTHISEFKNLRKNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L V+    + +I++ T+ G  VRF    +R   GR + GV+ I+L   
Sbjct: 636 LIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKDD 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +                         D EE                     
Sbjct: 695 DVAVCMDIAV-------------------------DGEE--------------------- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L +SE GFGKRT   ++++ NR G G+    +S+  + G L        +D+
Sbjct: 709 -------LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDDE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++L++  G  IR+ V +I + +R+  GV +  T +DE+VV++ +I
Sbjct: 760 LMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804


>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 887

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/885 (44%), Positives = 554/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 10  INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 70  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 130 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 190 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 250 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 310 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 370 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 416 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 464 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 524 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 583

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 584 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 642 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 701 EVVGLD-VAHANS-VDE------------------------------------------- 715

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 716 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 767

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 768 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 812


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 243 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 303 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 363 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 416 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 456

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 457 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 516

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 517 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 576

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 577 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 630

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 631 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 689

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 690 VKAITLGEEDQVVGMEI----------------------------------------VEE 709

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 710 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 754

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 755 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 812


>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
          Length = 887

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/886 (44%), Positives = 554/886 (62%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D++DED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K +  P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/885 (42%), Positives = 549/885 (62%), Gaps = 86/885 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K Y 
Sbjct: 6   EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYTE
Sbjct: 66  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++DG + +IDNP++ +  LM  I+GPDFPTGA I+G+ GI+ AY TGRG IV+R 
Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +IVVTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R+V+
Sbjct: 246 DAEIEEENG-RHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V+LN LY++T LQ  F V M+AL   +P    +  IL  ++ +++EV+ RR
Sbjct: 305 ELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM++            
Sbjct: 365 TVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q  AILE+RL RLTGL R+ I  E   L  +I+    IL+
Sbjct: 413 --------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +LLG+IK EL  +K +    RRT+I + + +++ ED I  ED+V+T+++ GY+KR+ 
Sbjct: 459 SEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRIS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y AQRRGGKG   +  +++DFV  + I STH+ VLFF++ G VYK + + +P    Q
Sbjct: 519 ADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQ 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  +IN++++   E+I T++   + +      ++  ATK+G V++  +S+F  + ++G
Sbjct: 579 AKGTNVINLIAIEPDEKIQTVLTVSDGKKEG---FLFMATKNGIVKKTHISEFKNLRKNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L V+    + +I++ T+ G  VRF    +R   GR + GV+ I+L   
Sbjct: 636 LIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKDD 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +                         D EE                     
Sbjct: 695 DVAVCMDIAV-------------------------DGEE--------------------- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L +SE GFGKRT   ++++ NR G G+    +S+  + G L        +D+
Sbjct: 709 -------LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDDE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++L++  G  IR+ V +I + +R+  GV +  T +DE+VV++ +I
Sbjct: 760 LMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804


>gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 904

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/896 (43%), Positives = 555/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           KV+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DA+ +         SA   L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDAEVENDESDDNDDSADSSLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 560/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V  ++ I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/890 (42%), Positives = 556/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL+ VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELIEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A
 gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
 gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 886

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/885 (44%), Positives = 554/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKDD 811


>gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
 gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
          Length = 878

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGEDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
 gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
          Length = 818

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/884 (42%), Positives = 559/884 (63%), Gaps = 91/884 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM  +G+  +K + K AR  GE
Sbjct: 16  IYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGITPDKPHKKSARTVGE 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VM KYHPHG+++IYDA+ RMAQD+S+R +L++G GNFGS++GD  AA RYTE R+   A 
Sbjct: 76  VMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAAAMRYTEARMSHLAL 135

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ K TVDF PN+D   +EP VL +R+P +LVNG  GIAVGMAT+IP HNLGEV+D
Sbjct: 136 QMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGMATSIPPHNLGEVID 195

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             V +ID+ +  ++ L +II+GPDFPTGA ILGR GI+  Y TG+G I IR    IE+T 
Sbjct: 196 ATVKLIDDRETSVEELAKIIKGPDFPTGAKILGRAGIREGYLTGQGKIKIRSTIDIEQTK 255

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +EQ+VV+EIPYQVNK  ++EKI ELV+EK I  I+++RDE++++G R+VIELKR A+A
Sbjct: 256 KGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNKEGIRIVIELKRDANA 315

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            ++LN+LY++TSLQ   S+ M+AL   +P++ TL+ IL  ++  ++E+V RRT++ L KA
Sbjct: 316 SIVLNKLYKHTSLQESMSMIMIALVNGEPKKLTLLQILNEYIKHQKEIVTRRTQFDLEKA 375

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +RAH+L GL IA+ N+DE+++IIR S +   A+++LM                      
Sbjct: 376 ENRAHILEGLRIALDNIDEIIKIIRSSYDD--AKQKLMD--------------------- 412

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                T  LSEVQT+AIL+++LARL GL R+ I NE + L  +I    +ILS+   L+ +
Sbjct: 413 -----TFSLSEVQTQAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNV 467

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+ELL +K++    RRT+IV+   ++E+ED I R+++ +T++H GY KR+ +  Y+ Q+
Sbjct: 468 IKEELLEIKEKYADERRTQIVDDDTNIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQK 527

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG +G+  R+ DFV ++   STH  +LFF++ G  +K K +++P  +  A+G  +IN
Sbjct: 528 RGGKGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIIN 587

Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            ++L++ E IT ++P   F ED+      Y++  T  G +++ KLS+F    +SG IA+K
Sbjct: 588 FVNLDKTEEITAVIPIDEFREDK------YLIAVTSQGLIKKVKLSEFESNRKSGLIAVK 641

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D+++++E    ++D+L+ T+ G  +RF  + +R   GR S+GV+ I+L   D++IS
Sbjct: 642 LHDGDKLIAIEKTNGDDDVLIVTRKGMSIRFNENDVRA-TGRQSIGVKAITLKGDDEIIS 700

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M +V                                               + +EL    
Sbjct: 701 MQLV----------------------------------------------SKGKEL---- 710

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
              L VS+KG+GKRT +  + +  R GKG +  D  K +  G L     V++ D I+L++
Sbjct: 711 ---LVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGALIVDEEDDIMLIN 767

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             G +IR+   EI   SRATKGV I    +D  ++S+ ++   E
Sbjct: 768 SDGIVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVMNEE 811


>gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 843

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/901 (41%), Positives = 557/901 (61%), Gaps = 88/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  +  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A IDN +I++D LM+ I+ PDFPTG  I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G ++IE+  G RE I+VTEIPYQVNKA M++K A+L+ +K++  I+ +RDESDR G R+V
Sbjct: 243 GNANIEEVQG-RECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+LY+YT+LQS FSVN +AL   KP+   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGKPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E   L   I++  DIL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  V+D+    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKDRRMSIIKEELQLVRDKYGDERRSKIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   NN YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D +L  +  T E+ ++L  K G+ +RF  +  R   GR + GVRGI L
Sbjct: 636 TNGINAITIKEDDVLLEAKLTTGESQVMLALKSGKAIRFEEAKTRPM-GRGASGVRGIRL 694

Query: 730 A--KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              K D+VI M  V   D++                                        
Sbjct: 695 QDEKTDEVIGMIAVNDMDSN---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL VSE G+GKR+S  D+RI+NR GKG++   +++  + G LV++  V
Sbjct: 715 ------------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVSIKNV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDE 905
            D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++   E E+VDE
Sbjct: 761 TDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAVAKVMHEEEEVVDE 820

Query: 906 A 906
            
Sbjct: 821 T 821


>gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 878

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 878

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 878

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 558/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L   DQV+ M I                                        VE 
Sbjct: 689 VKAITLGDEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 878

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
 gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
          Length = 836

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/891 (43%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 9   IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H L
Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TG+GSI++R    
Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSIIVRAKVE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  ++ I+V E+PYQVNKA ++EKIAEL R+K+I  I DLRDESDR G R+VIE++
Sbjct: 249 IEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+ TSLQ+ F +N +AL   +P+   L   L+ ++  +  V+ RRT++
Sbjct: 309 RDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVIRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLD V+ +IR S   + AR  LM +               
Sbjct: 369 ELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RLTGL R+ I  E  SL   I E   IL+   
Sbjct: 414 -----------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L II++EL+ VK+  +  RRT IV G  + +EDED I R+D+V++++H GY+KR+P+S
Sbjct: 463 KVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y++QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P     A+
Sbjct: 523 TYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +++GE +  I+   E    W   Y+ F TK G  +R  LS F  I  SG I
Sbjct: 583 GIPIINLLEVDKGEWVNAIIRVDEFVDDW---YLFFTTKQGISKRTPLSSFENIRNSGLI 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++SV+    + D+++ TK G  +RF  + +R   GR + GV+GI+L   D+
Sbjct: 640 ALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGITLDSEDE 698

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M I+                                             EE+     
Sbjct: 699 VIGMEIL---------------------------------------------EEQSD--- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L +++ G+GKRT   ++R+  R GKG+R  +++  N  G +VA+  V+  + I+
Sbjct: 711 -----VLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKN--GDVVALKCVSQEEDIM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           L++  G LIRV V++I    R T+GV +     +E V +V +++ SE  DE
Sbjct: 764 LITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTSEDEDE 814


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                            EE T+            
Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 878

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii SDF]
 gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii]
          Length = 904

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/893 (43%), Positives = 552/893 (61%), Gaps = 45/893 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPT  +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R +
Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FLENHYVFMATASGTVKRVE 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR +
Sbjct: 663 LEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ ++     +S       DAD +         SA   L+S     I SL      
Sbjct: 722 KGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV----- 767

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  G L
Sbjct: 768 ---VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GEL 814

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           V    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 815 VGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans]
          Length = 935

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/950 (42%), Positives = 568/950 (59%), Gaps = 79/950 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +  H L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP ID+D LME I GPDFPT  ++ G  GI   Y TGRG + +
Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG +ADV+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQLLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP  AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          DD    +G   G   L+EVQ   ILE+RL RLTGL ++ +  E   L  
Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I++EL+S+++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP   P ARG+ +IN + L QGER+  ++P  E     +  YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVRE---YADGHYVFFATRKGMVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PISAIRVF--- 716
           S+F    + GK+A+ LD  D ++ V     E D+LL    G+ VRF   P          
Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEADEVAV 719

Query: 717 ------------------------------------AGRNSVGVRGISLAKGDQVISMAI 740
                                                GR+S GVRGI LAK + V+S+ +
Sbjct: 720 DEAAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                A+  E        +   +    D +  T+   D+                   +I
Sbjct: 780 -----AEPAEGQDEDADDADLAQEAEADAQTRTADDADA-------------------YI 815

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +E G+GKRT   ++    R  +G+     S+ N  G LV    ++  D+++L+SD G
Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R   +EI    R T+GV +   +K E++ +VER+  S + +E  S E
Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923


>gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
 gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
          Length = 900

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/908 (43%), Positives = 569/908 (62%), Gaps = 72/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WNK Y K
Sbjct: 6   KEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDGS Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C A +D+ +I ++ LM+ I+GPDFPT  +I GR GI  AY TGRG I IR  
Sbjct: 186 NLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYGIINGRAGIIEAYRTGRGRIRIRAR 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E+ +   R+ I+VTEIPYQ+NKA ++E+IAELV+EK I  I +LRDESD+   R+VI
Sbjct: 246 ATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKN-IRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++RG +ADV+LN LY  T ++S+F +NMVAL   +P    L G+++AFV  R+EVV RR
Sbjct: 305 EVRRGENADVVLNNLYSQTQMESVFGINMVALVDGQPRLLNLRGVIEAFVRHRQEVVTRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+RAH+L GLA+A+AN+D V+ +I+ S +   A   L+ + W   ++  +++
Sbjct: 365 TVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIAMLE 424

Query: 433 LIDDS---------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              ++         ++    +G  YLS+VQ R ILE+RL RLTGL  + +  E       
Sbjct: 425 RAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEKLEI 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E L IL+SR RL+ +I+ EL ++++     R+T IV   LD+ DED I  E +VVT+S
Sbjct: 485 IRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQLDINDEDLIPEETVVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GY K  PL  Y+AQ RGG+G++   +++ED +  L +VSTH ++L F+S G V+  KV
Sbjct: 545 NDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKVFWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P    QA+G+ ++N+LSL + E+IT I+P         + +V  AT +G V++  L 
Sbjct: 605 YQIPQAGRQAKGRPIVNLLSLGENEKITAILPL---RGYDGDRFVFMATSNGTVKKVALQ 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +    G IA++L+  + ++ V       DI+L +  G+ VRF  + +R   GR + G
Sbjct: 662 EFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAM-GRTARG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L +   VI++ IV   DA                                     
Sbjct: 721 VRGMNLPEDAAVIAL-IVPDPDAQ------------------------------------ 743

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ILT  E GFGKRT   +F    R GKG+ A   S+ N  G L+ 
Sbjct: 744 ----------------ILTACENGFGKRTLVSEFPTKGRGGKGMIAIRTSERN--GKLMG 785

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SE 901
              VND ++++L+SD+GT++R+  +E+ +  R T+GV +    + ER+V +E++ E    
Sbjct: 786 AVQVNDGNEVMLISDQGTMVRIRADEVSLMGRDTQGVTLIRLNEGERLVGIEQVEEVSDA 845

Query: 902 IVDEAEST 909
            V+EA+++
Sbjct: 846 AVEEAKAS 853


>gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73]
 gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans]
          Length = 935

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/950 (42%), Positives = 568/950 (59%), Gaps = 79/950 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +  H L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP ID+D LME I GPDFPT  ++ G  GI   Y TGRG + +
Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG +ADV+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP  AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          DD    +G   G   L+EVQ   ILE+RL RLTGL ++ +  E   L  
Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I++EL+S+++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP   P ARG+ +IN + L QGER+  ++P  E     +  YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVRE---YADGHYVFFATRKGMVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PISAIRVF--- 716
           S+F    + GK+A+ LD  D ++ V     E D+LL    G+ VRF   P          
Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVDEVAV 719

Query: 717 ------------------------------------AGRNSVGVRGISLAKGDQVISMAI 740
                                                GR+S GVRGI LAK + V+S+ +
Sbjct: 720 DEAAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                A+  E        +   +    D +  T+   D+                   +I
Sbjct: 780 -----AEPAEGQDEDADDADLAQEAEADAQTRTADDADA-------------------YI 815

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +E G+GKRT   ++    R  +G+     S+ N  G LV    ++  D+++L+SD G
Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R   +EI    R T+GV +   +K E++ +VER+  S + +E  S E
Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923


>gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121]
 gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121]
          Length = 893

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/897 (43%), Positives = 556/897 (61%), Gaps = 63/897 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +   +WNK Y K
Sbjct: 6   KEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G V+GKYHPHG+ A+YDA+ R+AQ +S+R  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH  L DL K+TVDF PNYDG+   P V+  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DG +A+IDN  I +D LME I GPDFPT A I GR GI +AY TGRG I +R  
Sbjct: 186 NLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFINGRAGIVDAYKTGRGKIYMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            HIE    G+RE IV TEIPYQ+NKA ++EKIAELV++K++  I++LRDESD+ G R+VI
Sbjct: 246 HHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG +ADV++N L+  T LQ +F +NMVAL   +PE   L  +L+ FV  R EVV RR
Sbjct: 306 ELRRGENADVVVNNLFIQTQLQGVFGINMVALVDGRPELLNLKQVLECFVKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN++E++ +IR SP    A+ +L+ ++W   D+  +++
Sbjct: 366 TIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSAMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD     G  DG+ YLS VQ +AIL+LRL RLTGL  + ++NE  +L   I
Sbjct: 426 RAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALIELI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S +RL+ +I++EL  +K +    RRT I+    D+   D I    MVVT+S+
Sbjct: 486 AELLHILASPARLMEVIREELEEIKAQFGDVRRTEILTSRQDLTVADLIDEAPMVVTISN 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL  Y+AQRRGG+G+S   M+DED ++ L + S+H +++ FS+ G VY  +V+
Sbjct: 546 TGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFGKVYWLRVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ S  A+G+ ++N+L L++GE I+ ++P    E S                      
Sbjct: 606 EIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKS---------------------- 643

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                         D+ D    V +   E+ I + T  G   +   +A++ FA   S G+
Sbjct: 644 --------------DAEDAETEV-SEDAESFIFMATANGTVKK---TAMQHFARPRSTGL 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG- 783
             +SL + D+++ ++I      + ++ I  +       R    D   +   +  + V G 
Sbjct: 686 IALSLDESDELVGVSIT-----NGNDDIMLVSSTGKTIRFKESDVRAMG--RTAAGVRGI 738

Query: 784 NISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            ++ E  + + L    +   +LT  E G+GKRT+  DF +  R G+G+    VS  N  G
Sbjct: 739 KLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAIDDFPVYGRGGQGVIGIQVSDRN--G 796

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            +V    V D+D+IIL++D+GTL+R  V+E+    R T+GV +     +E++V V R
Sbjct: 797 PVVGAVQVADDDEIILITDQGTLVRTRVSEVSCQGRNTQGVTLIRLTNEEQLVGVVR 853


>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
          Length = 837

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/897 (43%), Positives = 557/897 (62%), Gaps = 89/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL  M ++G+  +K + K A
Sbjct: 8   LIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+
Sbjct: 68  RIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+TVDF PNYD    EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            E +D   A++DNPDI +  LM+  I+GPDFPTG +ILGR GI+ A+ TGRGSI++R   
Sbjct: 188 TETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSILVRSKH 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+E     + +IVVTE+PYQVNKA ++ KIA+LVREK+I  I  L DES+R+G R+VIEL
Sbjct: 248 HLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A  DVILNQLYR T LQ+ F VNM+AL    P++  +   L+ +V  + +V VRRTK
Sbjct: 308 RKDAQPDVILNQLYRMTQLQTSFGVNMLALVDKTPKQMGIREALQHYVDHQIDVTVRRTK 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DRAH+L GL IA+ ++DE++ +IR S N   AR  LM++              
Sbjct: 368 FELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQ-------------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AILE+RL RLTGL RD I NE   L   I +  DIL++ 
Sbjct: 414 ------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMATIADLRDILANH 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+L II+ EL  VK+     RRT I E   DM+DED I  ED+V+T++  GY+KR+P  
Sbjct: 462 DRVLSIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTD 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P     A+
Sbjct: 522 TYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  ++N+L+L++ E++  ++P  P+ ESS    +++F TK+G V+R  +S+F  I ++GK
Sbjct: 582 GLPVVNLLNLDKEEKVRALVPVRPDSESS----FLLFVTKNGLVKRTPMSEFDSIRQNGK 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V+  T +++I++    G+ VRF    IR   GR + GV+G ++  G 
Sbjct: 638 IAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV-DGS 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+  A                                       +S EG          
Sbjct: 696 IVVGAA---------------------------------------TSKEGT--------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L VSE G+GKRT+  ++R++ R  KG++  +V+  N+ G LV+V  VN ++  
Sbjct: 708 -----HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGDEDA 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++V+D G +IR+ V +I I SR T+GV + + + DE V  V  + + E V+EA   E
Sbjct: 761 MIVTDSGIIIRISVGDIGIYSRNTQGVKLINVSGDESVAKVAIVEKEEDVEEASDQE 817


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/866 (43%), Positives = 543/866 (62%), Gaps = 86/866 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 5   VKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA RYTE R+
Sbjct: 65  RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H L
Sbjct: 125 SKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPPHQL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + ++ +PD+ +  LME + GPDFPTGA I+GR GI+ AY TGRGSI +R  + 
Sbjct: 185 GEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITLRAKAE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +E I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R+VIE++
Sbjct: 245 IEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVIEVR 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA V+LN LY+ T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+ RRT++
Sbjct: 305 RDVSAHVVLNNLYKQTALQTGFGINMLALVDGQPKVLNLKQCLQHYLDHQKIVIRRRTQF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA  RAH+L GL IA+ +LDEV+ +IR S   + A+  LM +               
Sbjct: 365 ELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTK--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RLTGL R+ I  E   L   I     IL+   
Sbjct: 410 -----------FQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQ 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L II+ ELL +K++ +  RRT IV G L+ ++DED I RE++VVT++H GY+KR+P+S
Sbjct: 459 KVLQIIRDELLEIKEKFNDYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVS 518

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G  G+   ++DFV  L I STH  VLFF++ G VYK K + +P  S  A+
Sbjct: 519 TYRSQRRGGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAK 578

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L++ + E I T++     E    + ++ F TK G  +R+ LS F  I   G I
Sbjct: 579 GIPIVNLLNIEKDEVINTVIAI---EQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLI 635

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++SV+       I++ TK G  +RFP + +R   GR + GV+ I+L  GD+
Sbjct: 636 AIHLHEGDELISVKLTDGHKHIIVGTKNGMLIRFPETDVRSM-GRTAAGVKAITLCSGDE 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M                          ++GD E                        
Sbjct: 695 VVGM------------------------ESLNGDEE------------------------ 706

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL V+  G+GKRT + ++RI +R GKGI+  ++++ N  G +VAV  V   + ++
Sbjct: 707 -----ILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GDVVAVKTVTGEEDLM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGV 880
           L++  G +IR+ V++I I  R T+GV
Sbjct: 760 LMTASGVMIRMAVSDISIMGRNTQGV 785


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 243 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 303 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 363 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 416 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 456

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 457 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 516

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 517 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 576

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 577 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGVSKRTPLSSFA 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 634 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M I                                        VE +++
Sbjct: 693 ITLGDEDQVVGMEI----------------------------------------VEEDVN 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 713 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +    +D+ V +V +
Sbjct: 758 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAK 807



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 533 IVREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVL 590
           IV ED+ V+ V+  GY KR P+  YR Q RGGKG     + D++  +  +  V+    ++
Sbjct: 706 IVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIM 765

Query: 591 FFSSLGFVYKEKVWRLPIG--SPQARGKALINILSLNQGERITTIMPFPED 639
             ++ G      + R+P+   S   R    + ++ L + + + T+    +D
Sbjct: 766 LITAAGV-----IIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 811


>gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638]
 gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638]
          Length = 888

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/831 (46%), Positives = 537/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL KDTVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 SKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + 
Sbjct: 188 TEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDILSAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREELELVRDQFGDARRTEITANTSDINIEDLINREDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L+ F 
Sbjct: 608 PEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN---VFMATASGTVKKTALTGFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  +D++L +  G+ VRF  +A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IRLAGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSR-----GTQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGVSKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M I                                        VE +++
Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +    +D+ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAK 806



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 533 IVREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVL 590
           IV ED+ V+ V+  GY KR P+  YR Q RGGKG     + D++  +  +  V+    ++
Sbjct: 705 IVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIM 764

Query: 591 FFSSLGFVYKEKVWRLPIG--SPQARGKALINILSLNQGERITTIMPFPED 639
             ++ G      + R+P+   S   R    + ++ L + + + T+    +D
Sbjct: 765 LITAAGV-----IIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 810


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
 gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
          Length = 836

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/891 (43%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 9   IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H L
Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TG+GSI++R    
Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSIIVRAKVE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  ++ I+V E+PYQVNKA ++EKIAEL R+K+I  I DLRDESDR G R+VIE++
Sbjct: 249 IEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+ TSLQ+ F +N +AL   +P+   L   L+ ++  +  V+ RRT++
Sbjct: 309 RDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVIRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLD V+ +IR S   + AR  LM +               
Sbjct: 369 ELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RLTGL R+ I  E  SL   I E   IL+   
Sbjct: 414 -----------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L II++EL+ VK+  +  RRT IV G  + +EDED I R+D+V++++H GY+KR+P+S
Sbjct: 463 KVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y++QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P     A+
Sbjct: 523 TYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +++GE +  I+   E    W   Y+ F TK G  +R  LS F  I  SG I
Sbjct: 583 GIPIINLLEVDKGEWVNAIIRVDEFVDDW---YLFFTTKQGISKRTPLSSFENIRNSGLI 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++SV+    + D+++ TK G  +RF  + +R   GR + GV+GI+L   D+
Sbjct: 640 ALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGITLDSEDE 698

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M I+                                             EE+     
Sbjct: 699 VIGMEIL---------------------------------------------EEQSD--- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L +++ G+GKRT   ++R+  R GKG+R  +++  N  G +VA+  V+  + I+
Sbjct: 711 -----VLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKN--GDVVALKCVSQEEDIM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           L++  G LIRV V++I    R T+GV +     +E V +V +++ SE  DE
Sbjct: 764 LITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTSEDEDE 814


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M I                                        VE +++
Sbjct: 692 ITLGEEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda]
          Length = 878

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/894 (44%), Positives = 558/894 (62%), Gaps = 70/894 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 IEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY  T +Q  F +NMVAL+  +P+   L   L+AFV  R EVV RRT 
Sbjct: 308 KRDAVGRGVLNNLYTQTQMQVSFGINMVALHQGQPKLLDLKECLEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++   
Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLARA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++ED +  L + +TH ++L F S G +Y  K+++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFSRGRMYWMKMYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L   S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+  +  DE++ V+     ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ IV H +      I  +      +R  SG  E  T  +   + +G I
Sbjct: 723 GIKLAGEDRVVSL-IVPHGEG----AILTVTQNGYGKR--SGVAEYPTKSR---ATQGVI 772

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S                               +++ R+G  + A  V             
Sbjct: 773 S------------------------------IKVTERNGSVVGAVQVE------------ 790

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              D DQI++++D GTL+R  V+E+ I    T+GV++  TA+DE VV ++R+ E
Sbjct: 791 ---DCDQIMMITDAGTLVRTRVSEVSIVGCNTQGVILIRTAEDEHVVGLQRVVE 841


>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
          Length = 903

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/887 (43%), Positives = 563/887 (63%), Gaps = 84/887 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y 
Sbjct: 6   ESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  LI+GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K    +L D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 126 ARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G +++  NPDI +  LME ++GPDFPT  +ILG++GI+ A+ TGRGSI +R 
Sbjct: 186 HNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIILGKSGIRRAFETGRGSIQMRS 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311
            + IE+  G R++IVVTE+PYQVNKA M+EKIAEL R+K+I  I DLRDE+  R G RVV
Sbjct: 246 RAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGVRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++++ A+A V+LN LY+ T LQ+ F VNM+AL   +P+  +L   L+ ++  ++ VV R
Sbjct: 306 IDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKEALEEYLEHQKVVVRR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DRAH+L GL IA+ ++DE++R+IR S   + A   L ++           
Sbjct: 366 RTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQ----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL RD I +E   L   I+E  +IL
Sbjct: 415 ---------------FKLSERQAQAILDMRLRRLTGLERDKIESEYIELIAYIEELKEIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   +LL I++ EL+ +++     RR+ I + GL D+EDED I  E +V+T+SH  Y+KR
Sbjct: 460 ADEEKLLQIVRNELIDIRERYGDERRSEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P  S
Sbjct: 520 LPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G  ++N + L+  E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F  IN+
Sbjct: 580 RQSKGIPVVNAIELDNDESISTMIAVKDLESEDD--YLVFATRKGRVKRSALSNFSHINK 637

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+   + DE+++V     E DIL+ T     +RF  + +R   GR + GV+GI+L 
Sbjct: 638 NGKIAISFKNDDELIAVRLTDGEQDILIGTSHASLIRFNETTLRPL-GRTAAGVKGITLR 696

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VI + +    +A+ DE I                                      
Sbjct: 697 EDDKVIGLDVT---NAESDEEI-------------------------------------- 715

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   
Sbjct: 716 ----------LVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERN--GNIVCITSVTGE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +++V++ G +IR+ V +I    RA +GV +    +++ V +V ++
Sbjct: 764 EDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810


>gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 816

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/893 (41%), Positives = 550/893 (61%), Gaps = 84/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  NK 
Sbjct: 4   EPQENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+A++YDA+ RMAQDWSLR  L++GQGNFGS+DGD PAA RY
Sbjct: 64  FKKSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L DL KDTVDF+ N+D S QEP VL A+ P +L+NG  GIAVGMATN+
Sbjct: 124 TEARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNM 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A I+N DI ++ LM+ I+GPDFPT  +I G  GI+ AY TGRG +++
Sbjct: 184 PPHNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGSQGIREAYRTGRGKVLM 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE T   +EQI+VTEIPY VNKA ++E+ A+LV EK+I  I+D+RDESD+ G R+
Sbjct: 244 RAKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V +LKR A   V+LN LY+ TSLQ  F VN VAL   KP+   L  +++ FVA R EV++
Sbjct: 304 VYDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGKPQTLNLKELIQHFVAHRHEVLL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+TKY LN+A+ R H+L G  IA+ NLD ++ +IR S + E A++ L+Q           
Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQ----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q +AILELRL RLTG+ RD I  E       I+    I
Sbjct: 413 ---------------TYQLSEQQAKAILELRLQRLTGMERDKILQEHRETTQLIERLQLI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS R   + +IK EL  +K++    RRT I     D+  ED I  EDMV+T+S  GY+KR
Sbjct: 458 LSDRDLQMTLIKNELAELKEQYGDARRTVIEHNTDDITLEDMIAEEDMVITISQQGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS YR Q RGG G      +++D++T LF+ STH  +L F++LG V+ +KV+ LP GS
Sbjct: 518 TPLSEYRIQNRGGVGARSTATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N++ +  G+++ +++     +DE+  N+ Y++  T  G +++  L  +I  
Sbjct: 578 KSSKGRAIQNLIPIAPGDQVQSVIKVRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINP 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+K++  D +L+V+    +N +++  + G+ + F    +R   GR S GVRGI+
Sbjct: 638 RTNGIQAIKINEGDRLLTVKLTKGDNHVIIALRSGRAIHFHERDVRSM-GRVSTGVRGIT 696

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA   D+V+ M  V   D +                                        
Sbjct: 697 LAGPEDRVVGMVTVYKPDIE---------------------------------------- 716

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+EKG GKR++  D+RI+ R GKG++  ++++  + GAL A+  V
Sbjct: 717 ------------LLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITE--KTGALAAIEAV 762

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            D D++++++  G  IR+ V+ +RI  R T+GV +    + + + S+ +I E+
Sbjct: 763 TDADELLIINTSGIAIRIEVSTLRIMGRNTQGVRLIRLNEGDAITSIAKITEN 815


>gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
          Length = 878

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/892 (42%), Positives = 551/892 (61%), Gaps = 86/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+ +G R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR+G R
Sbjct: 242 VRAKSEIEEENG-RHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM   +N      
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMD-EFN------ 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 414 -------------------LSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LLG+IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +        Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTITDKRRDG---YLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R   GR + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVR-HMGRTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +                         D EE                  
Sbjct: 691 KDDDIAVCMDIAV-------------------------DEEE------------------ 707

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   +++I +R G G+    +S+  + G LV       
Sbjct: 708 ----------LLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +D+++L++  G  IR+ V++I   SRA  GV +  T ++E++V++ +I +S+
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSD 807


>gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131]
          Length = 886

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/885 (44%), Positives = 553/885 (62%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++ QGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +INR+GK
Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI+L +GD
Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ +  V HA++  DE                                           
Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/903 (43%), Positives = 566/903 (62%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G RE+IVVTEIP+QVNKA M+EKIA+LVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   ++DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     +  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    D + DE                                     
Sbjct: 694 RLRDGDEVIGLDVA--DDDNKDE------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+++G +IR+ V+ I +  R  +GV +     ++ V +V ++ +E E ++  
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESD 820

Query: 907 EST 909
           E T
Sbjct: 821 EDT 823


>gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472]
 gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472]
          Length = 866

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/836 (44%), Positives = 535/836 (63%), Gaps = 37/836 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 8   KETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + R+AQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 68  SARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEI 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL D+ K+TVDF PNYDGS  EP++L A+ PN+LVNG  GIAVGMATNIP H
Sbjct: 128 RMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMATNIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+A++ N D+ +D L++II  PDFPT  +I G  G+K  Y TGRG +++R  
Sbjct: 188 NLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGRVIMRAR 247

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    GDRE I+V EIPYQVNKA +LE+I+ELVR+K+I  I+DLRDESD+ G RVVI
Sbjct: 248 THTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDKSGMRVVI 307

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN L++ T LQ  F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 308 ELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQPRLLNLKQILEEFLRHRREVVTRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A++N+DE++ +I+ S  P  A+  LM R+W +S ++D++ 
Sbjct: 368 TIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRSSLVEDMLS 427

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            ++         D ++ +  DG  +LS+ Q +AIL++RL RLTGL +D I  E   +   
Sbjct: 428 RVEGDKARPENIDPAFGMKEDG-YHLSDTQAQAILDMRLQRLTGLEQDKIVGEYREIMDV 486

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL+   R+  II +EL +++ +   PRR+ I     D+  ED I  +DMVVT+S
Sbjct: 487 ILDLLDILAKPERISQIIGEELTAIRAQFGDPRRSEIEPYGGDINIEDLITPQDMVVTIS 546

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+K  P+  Y +QRRGG+G+     +D+DF+  LF+ +TH  VL FSS G  Y  KV
Sbjct: 547 HTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSRGRCYWRKV 606

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP G  Q+RGK ++N+L L +GE+I  ++P  E     ++ +V   T +G V++  L 
Sbjct: 607 YDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKE---FRDDQFVFMCTANGTVKKTPLV 663

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   +G IA+ LD  D ++ V     ++ I+L +  G+ VRF  + +R   GRN+ G
Sbjct: 664 DFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSETDVRPM-GRNATG 722

Query: 724 VRGISLAKGDQVISM--------AIVLHADADYDERIC---YMKHMSAQRRLISGDTEEI 772
           VRG+ L    QVIS+         ++  +D  Y +R C   + +     + +I+ D  + 
Sbjct: 723 VRGMMLGDDHQVISLLVSNSEQQMVLTASDGGYGKRTCVGDFRRTSRGTQGVIAMDLTDK 782

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           T LK    V  ++ EE           I+ ++  G   RT   + R + RS +G+R
Sbjct: 783 TGLK---LVAASLVEETDD--------IMLITTGGVLIRTKVAEVRETGRSAQGVR 827



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 19/211 (9%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV--YKEKV 603
           G VK+ PL  +   R  G     V + D D +  + +      ++ FS  G    + E  
Sbjct: 655 GTVKKTPLVDFSRPRTAGI--IAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSETD 712

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            R     P  R    +  + L    ++ +++      S+     V+ A+  G  +R  + 
Sbjct: 713 VR-----PMGRNATGVRGMMLGDDHQVISLLV-----SNSEQQMVLTASDGGYGKRTCVG 762

Query: 664 DFIQINR--SGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           DF + +R   G IAM L  +   ++++     + +DI+L T  G  +R  ++ +R   GR
Sbjct: 763 DFRRTSRGTQGVIAMDLTDKTGLKLVAASLVEETDDIMLITTGGVLIRTKVAEVRE-TGR 821

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++ GVR I+L +G+++I + IV  ++A+  E
Sbjct: 822 SAQGVRLINLDEGEKLIGLEIVAESEAECAE 852


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/905 (42%), Positives = 556/905 (61%), Gaps = 90/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+ +G R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR+G R
Sbjct: 242 VRAKSEIEEENG-RHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM   +N      
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMD-EFN------ 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 414 -------------------LSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LLG+IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +        Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTVTDKRRDG---YLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R   GR + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVR-HMGRTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +                         D EE                  
Sbjct: 691 KDDDIAVCMDIAV-------------------------DEEE------------------ 707

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   +++I +R G G+    +S+  + G LV       
Sbjct: 708 ----------LLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD----E 905
           +D+++L++  G  IR+ V++I   SRA  GV +  T ++E++V++ +I +S+  D    E
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDEDLEENE 815

Query: 906 AESTE 910
            ES E
Sbjct: 816 FESNE 820


>gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 878

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/831 (45%), Positives = 538/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 815

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/879 (44%), Positives = 549/879 (62%), Gaps = 85/879 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y K A
Sbjct: 10  VVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE R+
Sbjct: 70  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP HN+
Sbjct: 130 SKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G + +IDNP+  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R  +H
Sbjct: 190 VEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRARAH 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VIEL+
Sbjct: 250 IETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIELR 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ++ +VILNQLY++T LQ  F V M+AL   +P    L  IL  +++ +E V+ RRT+Y
Sbjct: 310 RDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITRRTQY 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM                 
Sbjct: 370 ELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM----------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                   DG   L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+ R 
Sbjct: 413 --------DG-FKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRM 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L IIK EL+ V+D+    RRT I     +M+  D I  ED+VVT++   Y+KR+PL  
Sbjct: 464 KVLAIIKDELIEVRDKYGDERRTEITFDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDT 523

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G V+  K + +P    QA+G
Sbjct: 524 YRRQRRGGVGVKGMGTKETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKG 583

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A+IN+L++   ERIT ++   E +    + ++   TK G V++  L++F  I +SG  A
Sbjct: 584 TAIINLLAVEADERITAVIQVREFKP---DRFLFLGTKRGVVKKTPLAEFANIRKSGLKA 640

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++ V+    EN I+L T+LG+ + FP S +R   GR + GVRGI LA GD+V
Sbjct: 641 VNLDEEDELIGVKFTDGENRIMLGTRLGKAIAFPESGVRSM-GRVTRGVRGIMLADGDEV 699

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++M I                                  LK+DS V              
Sbjct: 700 VAMDI----------------------------------LKSDSEV-------------- 711

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V ++ +++L
Sbjct: 712 -----LTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVREDQELML 764

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ +G +IR  VNEI   SR T+GV + + A+++RV S+
Sbjct: 765 ITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASM 803


>gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
 gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
          Length = 828

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/863 (44%), Positives = 547/863 (63%), Gaps = 79/863 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGS
Sbjct: 1   MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EVVDG +A+IDNPDID++ LME I GPDFPT A I GR+GI  
Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATISGRSGIVE 180

Query: 240 AYATGRGSIVIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           AY TGRG I +R  + I   EKT   +E I+VTEIPYQVNKA ++EKIAELV+EKR+  I
Sbjct: 181 AYKTGRGRIHLRAQAEIEVDEKTG--KETIIVTEIPYQVNKARLIEKIAELVKEKRVEGI 238

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           + LRDESD+ G R+VIE++RG   +V+LN LY  T LQ +F +NMVAL+  +P  F L  
Sbjct: 239 SALRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQPRLFNLRD 298

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L  FV  R EVV RR+ Y L KAR+RAH+L GLAI++AN+DE++ +IR SP P  A+  
Sbjct: 299 MLDCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAG 358

Query: 417 LMQRSWNASDIKDLIDL--IDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTG 467
           L+ R+W   D+  +++   +D +        Y I  DG  +L+E Q +AIL+LRL +LTG
Sbjct: 359 LIARAWQLGDVAAMLETAGVDAARPDHLPEEYGI-RDGNYHLTEEQAQAILDLRLHKLTG 417

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L  + I +E   L  +I E L IL+S  RL+ +I++EL+ +++     R+T I     D+
Sbjct: 418 LEHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDI 477

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  ED+V+T+SH GYVK  PL+ Y AQRRGGKG++   M+DEDF+  L++ +TH 
Sbjct: 478 SMEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHD 537

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWN 644
           ++L FS+ G +Y  KV++LP+ S  +RGK ++N+L L   ERIT I+P   +PED+    
Sbjct: 538 TILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDYPEDK---- 593

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             +VV AT+ G +++  L ++ +    G IA+ L   DE++ V+      +I+L +  G+
Sbjct: 594 --FVVMATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAGK 651

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VRF    +R   GR + GVRGI L +G +V+S+ +                        
Sbjct: 652 VVRFAEEQVRSM-GRTATGVRGIRLEEGQRVVSLIV------------------------ 686

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                     +E + +E  +LTV+E G+GKRT   ++   +R+ 
Sbjct: 687 -------------------------PREYEEEEANVLTVTENGYGKRTPLSEYPAKSRAT 721

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG+ +  VS+ N  G++V    V D ++I+L+S+KGTL+R  VNE+    R T+GV +  
Sbjct: 722 KGVVSIKVSERN--GSVVGAMEVIDGNEIMLISNKGTLVRTRVNEVSTVGRNTQGVRLIR 779

Query: 885 TAKDERVVSVERIRESEIVDEAE 907
           TA DE+VV ++RI E   +DE E
Sbjct: 780 TADDEKVVGLQRIDE---IDEDE 799


>gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
 gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
          Length = 878

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/832 (45%), Positives = 542/832 (65%), Gaps = 37/832 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         + I  DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPQFGI-HDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIREQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK-- 776
           GI LA  D V+S+       AI+      Y +R    ++ +  R      T+ + S+K  
Sbjct: 723 GIKLAGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSR-----GTQGVISIKVT 777

Query: 777 -NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
             + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 778 ERNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 811

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/884 (42%), Positives = 547/884 (61%), Gaps = 86/884 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K AR+ 
Sbjct: 10  ISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKKSARVV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+AAIYD + RMAQD+SLR  L++GQGNFGS+DGDP AA RYTE R+QK 
Sbjct: 70  GDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEVRMQKM 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH +L+DL K+TVDF PNYD + QEP VL  R PN+LVNG  GIAVGMATNIP HNLGE+
Sbjct: 130 AHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPHNLGEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D   A+I+NP +  + L++ + GPDFPTG +I GR GI +AY+TGRG I IR    +EK
Sbjct: 190 TDALCALIENPKLMPEELLQYVPGPDFPTGGIIYGRAGIHSAYSTGRGIIKIRARIMVEK 249

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +   +E +VVTE+PYQVNKA ++EKIA L+++K I  +A +RDESDR+G R+ + LK+ 
Sbjct: 250 DNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIAMGLKKD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A +I+N+LY++T L++ F + ++++   +PE   L   L+ F+A R+ VV+RRTKY L
Sbjct: 310 EMASIIINKLYKHTQLENSFGIILLSIVNNRPELLNLKETLQYFIAHRKVVVIRRTKYEL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L G  IA+ NLDEVV++IR S  P  AR  LM R                 
Sbjct: 370 AKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMAR----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+++Q +AIL++RL +LTGL  + +  E   L   I    +IL+S   +
Sbjct: 413 ---------FDLTQIQAQAILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILASDQLV 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L I++ ELL V+ E    RRT IV+   ++  ED IV EDMVVT+SH GY+KR PL++Y 
Sbjct: 464 LEIVRDELLEVRTEYVDERRTEIVDDEGEITIEDMIVEEDMVVTISHRGYIKRNPLTLYH 523

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG+ G+   DEDFV+ LF+ STH ++LFF++LG VY  KV+ +P     A+GK 
Sbjct: 524 SQRRGGKGKIGMGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRAAKGKF 583

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + N+L+L   E++ T++   E E  +N   ++ ATK G +++  L  +     +G IA+ 
Sbjct: 584 ISNLLNLAPDEQLATVLDVKEFEPGYN---IIMATKDGIIKKTDLLAYSNPRSNGIIALS 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D++++        ++ L +  G+ +RF  S +R   GR S GV+G++LA GD ++ 
Sbjct: 641 LGEGDQLIAARISDGTQNVFLGSAFGKSIRFHESDVRAM-GRVSRGVKGMTLAAGDHLVG 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M ++ H                                                      
Sbjct: 700 MEVLTHG----------------------------------------------------- 706

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + + + +E GFGKRTS  ++ +  R GKG+      + N  GA+V++  V+++D ++L++
Sbjct: 707 KTLFSCTENGFGKRTSLDEYPLQKRGGKGVITIRTHERN--GAVVSILVVSNDDDLMLMT 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D G +IR+P+ +I + SR T GV +      E+++  +R+ E +
Sbjct: 765 DAGKIIRMPMGDISVISRNTMGVRLMGMEPGEKLIGAQRLAEKD 808


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/893 (42%), Positives = 555/893 (62%), Gaps = 92/893 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L   DQV+ M I                                        VE 
Sbjct: 689 VKAITLGDEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/884 (42%), Positives = 546/884 (61%), Gaps = 88/884 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRRILF M  +G  ++K + K AR+
Sbjct: 10  SVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL RMAQ WS+R +L++GQGNFGSVDGD PAA RYTE R+ +
Sbjct: 70  VGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMSR 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S +EP VL ARYPN+L+NG  GIAVGMATNIP HNL E
Sbjct: 130 LAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLAE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            ++  +A+++NP+ID D LM+I+ GPDFPTG  I GR+GI++A+ TGRGS+ +R  + +E
Sbjct: 190 TINATIALVNNPEIDDDELMQIMPGPDFPTGGFIYGRSGIRSAFMTGRGSVTMRARAIVE 249

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                 R+ +++TE+PYQVNKA ++E IA  VR+K++  I DLRDESDR G R+ IELK+
Sbjct: 250 VNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIELKK 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
               +V+LN LY++T LQ  F  N++AL   +P+   +  +L  F+  R +VV RR  + 
Sbjct: 310 NEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQPKLCGVRELLLHFLDHRRQVVTRRCLFD 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+  +DEV+++IR S     A+  LM+                 
Sbjct: 370 LAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEH---------------- 413

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LS++Q +AIL++RL RLTGL RD I+ E   +   I     IL+    
Sbjct: 414 ----------FGLSDLQAQAILDMRLQRLTGLERDKIKAEYEEIQRLITHLKAILADEKL 463

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I +E+ +V+D    PRR+ I++   ++  ED I  EDMVVT+S+ GY+KR   S+Y
Sbjct: 464 LMNVIVEEMEAVRDRYADPRRSEIMDETAELSVEDLITEEDMVVTISNEGYIKRNATSLY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGG+G++ +  +DEDFV  L + STH  +LFFS  G V+++KV+ +P     ARGK
Sbjct: 524 RAQRRGGQGKTAMTTKDEDFVAQLMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGK 583

Query: 617 ALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           AL+N+L + + ERI+  +   E DE    N +++ ATK+G V++ +LS++  I  +G IA
Sbjct: 584 ALVNLLPVEKDERISATLAIREFDE----NRFIIMATKNGVVKKTRLSEYQNIRANGIIA 639

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +KLD  D ++SV     + D++L T  G+ +RF  S +R   GR++ GV G+ L     V
Sbjct: 640 IKLDDDDGLISVLVSNGDEDVMLATSGGKAIRFAESDVRPM-GRSTRGVTGMRLPGDCNV 698

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM +V                           ++E T                      
Sbjct: 699 ISMTLV---------------------------SDEAT---------------------- 709

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L VSE GFGKRTS  ++ +  R G+G+        N  G +VA   V+D+DQ+++
Sbjct: 710 ----LLAVSENGFGKRTSVSEYNVQKRGGQGVFTLKTGGRN--GDMVAALLVHDDDQVMM 763

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++D G L+R+ +N + +  R T+GV + +  + ERV+   R+ E
Sbjct: 764 MTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAE 807


>gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 840

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/900 (41%), Positives = 555/900 (61%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 10  VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 70  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  + +IDN      +  ++ L+EII+GPDFPTGA ILGR+GI  AY TGRG I +
Sbjct: 190 REVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYRTGRGKIKV 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE  +  +++I+VTE+PY VNKA ++EKIA LVREK++  I +LRDESDR G R+
Sbjct: 250 RAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDESDRSGMRI 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R A+A+VILNQLY++T LQ  F V M+AL   +P+   L  +L  ++  +++VV 
Sbjct: 310 CIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYLTHQKDVVT 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA  N+DEV++IIR + N + A+ ELM+R          
Sbjct: 370 RRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELMER---------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL  L GL R  +  E   L   I E   I
Sbjct: 420 ----------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+IK E+  ++D+    RRT+I   + D+  ED I RE+ V+T++ LGY+KR
Sbjct: 464 LADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITMTKLGYIKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   DED++ +LF+ +TH  ++FF++ G VY+ K + +P   
Sbjct: 524 MTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESG 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L  GE+IT ++P  + E      Y++ ATK+G V+++ + ++  I +
Sbjct: 584 RTARGSAIVNLLQLQPGEKITAVIPLVDYEEGK---YLLMATKYGVVKKSSIMEYANIRK 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D+++ V+    + D+ L TK GQC+RF  S +R   GR S+GVRGI+L 
Sbjct: 641 TGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSMGVRGINLT 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M +                                     DS  E        
Sbjct: 700 GDDEVIGMQL-------------------------------------DSQGEA------- 715

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VS  G GKRT + +F   +R GKGI+   +++  + G +V V  VND+
Sbjct: 716 ---------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVVGVKAVNDD 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++I++++ +G +IR  V+ I I  R T GV + +  ++  V S+ ++RE ++ DE E  +
Sbjct: 765 NEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKLEDEMEKIQ 824


>gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2]
          Length = 827

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/897 (41%), Positives = 554/897 (61%), Gaps = 90/897 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 10  VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 70  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  + +IDN      +  ++ L+EII+GPDFPTGA ILGR+GI  AY TGRG I +
Sbjct: 190 REVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYRTGRGKIKV 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE  +  +++I+VTE+PY VNKA ++EKIA LVREK++  I +LRDESDR G R+
Sbjct: 250 RAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDESDRSGMRI 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R A+A+VILNQLY++T LQ  F V M+AL   +P+   L  +L  ++  +++VV 
Sbjct: 310 CIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYLTHQKDVVT 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA  N+DEV++IIR + N + A+ ELM+R          
Sbjct: 370 RRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELMER---------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL  L GL R  +  E   L   I E   I
Sbjct: 420 ----------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+IK E+  ++D+    RRT+I   + D+  ED I RE+ V+T++ LGY+KR
Sbjct: 464 LADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITMTKLGYIKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   DED++ +LF+ +TH  ++FF++ G VY+ K + +P   
Sbjct: 524 MTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESG 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L  GE+IT ++P  + E      Y++ ATK+G V+++ + ++  I +
Sbjct: 584 RTARGSAIVNLLQLQPGEKITAVIPLVDYEEGK---YLLMATKYGVVKKSSIMEYANIRK 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D+++ V+    + D+ L TK GQC+RF  S +R   GR S+GVRGI+L 
Sbjct: 641 TGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSMGVRGINLT 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M +                                     DS  E        
Sbjct: 700 GDDEVIGMQL-------------------------------------DSQGEA------- 715

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VS  G GKRT + +F   +R GKGI+   +++  + G +V V  VND+
Sbjct: 716 ---------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVVGVKAVNDD 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++I++++ +G +IR  V+ I I  R T GV + +  ++  V S+ ++RE ++ DE E
Sbjct: 765 NEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKLEDEME 821


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/890 (42%), Positives = 549/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  V I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   DEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +IDNPDI +  LM  I+GPDFPT  +I+G +GI++AY TGRG I++R
Sbjct: 183 PHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGTSGIRSAYETGRGKILVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+  G R +I++TEIPYQVNK+ ++E +A+LV+ K+I  I+D+RDESDR G R+V
Sbjct: 243 AKAEIEEVKG-RNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LNQLY++T +Q  F + M++L   +P+   L  +L  ++ F+EE+V R
Sbjct: 302 IELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNEPKVLNLKQMLVYYLQFQEEIVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA+ RAH+L GL IA+ ++DEV+ +IR S   E AR  LM             
Sbjct: 362 RTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 411 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIENEYNELMETIKHLKEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++  LL IIK EL+ ++D+    R+T I     D+  ED I  +++V+T++H GY+KR+
Sbjct: 456 ENKELLLKIIKDELIEIRDKYGDERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH ++LFF++ G VYK K + +P    
Sbjct: 516 SADTYSSQRRGGKGIQAMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N++ L   E+I  ++ F E +      Y + AT+ G +++ K+S +  I ++
Sbjct: 576 TAKGTNLVNLIPLQGDEQIQAVISFKEVDKDN---YFIMATRCGLIKKTKISQYASIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V   T E++IL+ TK G  +RF    +R   GRN+ GVR I+L  
Sbjct: 633 GLNAINLKDEDELIGVRMTTGESEILIFTKNGYAIRFSEDDVRP-TGRNTTGVRAITLRT 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  ++M IV                                              ++ Q
Sbjct: 692 GDIAVAMDIV----------------------------------------------DKSQ 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +       +L +SE GFGKRT   ++ I  R GKGI    V++  + G +V    V D D
Sbjct: 706 D-------VLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTE--KTGLIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V+EI + +R T GV +  T +++RVV++ +I  S+
Sbjct: 757 EMMLINSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSD 806


>gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
 gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
          Length = 904

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/896 (42%), Positives = 552/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       ++     G   ++Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           +V+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 RVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S      A+ + DE               S D E+   L   
Sbjct: 719 RTAKGVRGMRVSFASSTLSEE---DAEVENDE---------------SDDNEDSADLNVV 760

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S +   +      E       +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 761 SRIVSLVVVPETGE-------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    ++++ +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 817

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/799 (46%), Positives = 527/799 (65%), Gaps = 28/799 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKL 795
            + SV G +  + C ++ +
Sbjct: 779 RNGSVVGAVQVDDCDQIMM 797


>gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 873

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/874 (43%), Positives = 536/874 (61%), Gaps = 60/874 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRIL+ M +  +     + KCAR+ 
Sbjct: 13  VSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARVV 72

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDAL RM Q +SLR  LI+GQGN+GSVDGD PAA RYTE RL + 
Sbjct: 73  GDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLSRM 132

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL KDTVDF PNYD S  EP VL A++P +LVNG GGIAVGMATNIP HNLGE+
Sbjct: 133 AVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGEI 192

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I NPD+ L+ L+ ++ GPDFPTG +I G++GI  AY TGRGSI +RG S +EK
Sbjct: 193 IDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGSITMRGRSQVEK 252

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           T  GDREQ+V TEIPYQVNKA ++ KIAE ++EKRI  I+++RDESDR+G R+V+ELK+ 
Sbjct: 253 TMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELKKD 312

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
               V+LNQLYR T LQ+ F V  +++   +P   +L   L  F+  R EVV RR ++ L
Sbjct: 313 IFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRREVVTRRCRFEL 372

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLIDD 436
            +A  +  ++ GL +A +++D +V  IR S +P+ AR  L +       +        + 
Sbjct: 373 RQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRAGRPEP 432

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                 + G  +LSE Q +AILE+RL+RLTGL R+ +  E   L   I+    IL+    
Sbjct: 433 ECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAILADMGL 492

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  +K      RRT IV    +++ ED I  EDMVVT+SH GY+KR P S Y
Sbjct: 493 LMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHAGYLKRTPTSTY 552

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGGKG  G+  R+ED+V+ LF+ STH+ V FFS  G V+ +KV+ +P     A+G+
Sbjct: 553 RAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIPQAPRNAKGR 612

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N + +  GE++  I P P   S     +VV  T+ G +++  L+++      G I +
Sbjct: 613 AIVNFVGMEPGEKVAAITPVP---SFDGETFVVTLTRRGQIKKTALNEYENYRDKGIIGV 669

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +++  D++ +      + ++++ T+ G  +RFP   +R   GR ++GV+GI L +GD V+
Sbjct: 670 RIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP-TGRATMGVKGIELDEGDVVV 728

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +                          +SGD  +                         
Sbjct: 729 GLG-------------------------VSGDGRD------------------------- 738

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L V E+G+GK+T   +FR+ +R GKG+   D S+ N  G +V V  V+ +D++++V
Sbjct: 739 --RVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERN--GPVVGVAMVSPSDEVLIV 794

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           +D+G +IR   +EIR   R  +GV I    +DER
Sbjct: 795 TDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828


>gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 904

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/896 (42%), Positives = 554/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G   ++Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           +V+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 RVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DAD +         SA   L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDESDDNDDSADSNLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/895 (43%), Positives = 559/895 (62%), Gaps = 90/895 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NP++    LM+II GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S+IE+TS  +++IV+ EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+  V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+          
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                   +Y+        LSE Q +AIL++RL RLTGL R+ I +E   L   I E   
Sbjct: 413 --------NYS--------LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV  G+  +EDED I  E++V+T++H GY+
Sbjct: 457 ILADNEKVLEIIREELTEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               A+G  +IN+L + +GE I  I+P  E DE+S    Y+ F T+HG  +R  LS F  
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDENS----YLFFTTRHGVSKRTTLSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+++V     E  I++ TK G  +RF  + +R   GR + GV+GI
Sbjct: 633 IRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREM-GRTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L++ D V+ M I L  DA+                                        
Sbjct: 692 TLSEDDIVVGMEI-LEPDAN---------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+EKG+GK T   ++R+ +R GKG++   ++  N  G LVAV   
Sbjct: 711 ------------VLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNN--GPLVAVKAT 756

Query: 848 N--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           N    + +++++  G +IR+ V++I    R T+GV +     +E V +V  + +S
Sbjct: 757 NAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQS 811


>gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
 gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
          Length = 859

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/897 (42%), Positives = 558/897 (62%), Gaps = 84/897 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E  E  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEETDNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ GEV+GKYHPHG++++YD + RMAQ WSLR +LI+GQGNFGS+
Sbjct: 61  QGLGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL+K A  +L D+ KDTVDFR N+D S +EP VL AR PN+LVNG  
Sbjct: 121 DGDGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNI  HNL EV+D  +A ID+ +I +  LM+ ++ PDFPTG +I G  G++ A
Sbjct: 181 GIAVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIYGYEGVREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE  S +RE+I+VTEIPYQVNKA M+E+ AELV EK+I  I+++R
Sbjct: 241 FETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V E+KR A+A ++LN LY+YT+LQ+ FSVN +AL   +P    L  ++  
Sbjct: 301 DESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGRPMLLNLKDMIVH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVVVRRTK+ L +A  RAH+L GL IA+ +LDEV+ +IR S  P+ AR  LM +
Sbjct: 361 FVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I+ E   L
Sbjct: 421 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYADL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+    +L+  S  + IIK+EL+ VK+     RRT IV    ++  ED I  E++V+
Sbjct: 455 MKQIEYLKSVLADESLRMSIIKEELVEVKEAYGDERRTEIVHSAAELMTEDFIEDENVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR PL+ YR Q RGGKG  G   RDEDF+  +F+ S H  +LFF+  G  Y 
Sbjct: 515 TISHEGYIKRTPLTEYRTQGRGGKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            +V+ +P GS  ++G+A+ NI+++++ E+I   +     +D+    N +++  TK G ++
Sbjct: 575 LRVFEIPEGSRTSKGRAIQNIINIDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  DE+L     T  ++I++  + G+ +RF  S +R   G
Sbjct: 635 KTTLEAYSRPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPM-G 693

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGISLA   D+V+ M                          IS D+ E T    
Sbjct: 694 RTATGVRGISLAHDKDEVVGM--------------------------ISIDSPEST---- 723

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKRT   D+R++NR GKG++  +++  ++
Sbjct: 724 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINIT--DK 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G LVA+  V DND +++++  G +IR+ ++ +R+  RAT+GV + +  + + + SV
Sbjct: 760 TGQLVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESDEIASV 816


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/893 (42%), Positives = 555/893 (62%), Gaps = 92/893 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L   DQV+ M I                                        VE 
Sbjct: 689 VKAITLGDEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++             +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVA
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V  V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M I                                        VE +++
Sbjct: 692 ITLGEEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M I                                        VE +++
Sbjct: 692 ITLGEEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/894 (42%), Positives = 567/894 (63%), Gaps = 90/894 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I++EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI G
Sbjct: 15  NISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVG 74

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ A+YD++ RMAQ++S R +LI+G GNFGS+DGD  AA RYTE R+ K +
Sbjct: 75  EVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAAAMRYTEARMSKIS 134

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L+ D+ K+TVDF  NYDG  +EPVVL +R+PNVLVNGG GIAVGMATNIP HNLGEV+
Sbjct: 135 MELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGMATNIPPHNLGEVI 194

Query: 200 DGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           D  +A+IDNPDI +  LME  I GPDFPTGA++LGR+GIK+A+ TGRGS+V+R    IE+
Sbjct: 195 DATIALIDNPDITIKELMEDYIFGPDFPTGALLLGRSGIKSAFETGRGSVVMRAKVDIEE 254

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               + +I+++EIPYQVNKA ++EKIA LVR+K I  I DLRDES+R+G R+V+EL+R  
Sbjct: 255 MKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESNREGIRIVVELRREV 314

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+V+LNQLYR T+LQS F VNM+AL   +PE   L+ +L  +   + E+V RRT++ L 
Sbjct: 315 QAEVVLNQLYRLTALQSSFGVNMLALVNGRPELLNLLQVLSHYRDHQIEIVTRRTQFELK 374

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPN-PETARRELMQRSWNASDIKDLIDLIDDS 437
           KA DRAH+L GL IA+ ++DEV+ IIR S + PE   R  +  +++              
Sbjct: 375 KAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITR--LNEAFD-------------- 418

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+E+Q++A+L+++L RLTGL RD + NE N L I I +  DIL++  RL
Sbjct: 419 -----------LTEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRL 467

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L IIK EL+ +K +    RR+ IVE  +DM DED I  ED+VVT++  GY+KR  +  + 
Sbjct: 468 LTIIKDELIEIKTKFGDDRRSEIVEADIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFN 527

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGGKG  G+   DED V     +STH  +L F++LG VY+ + + +P  S  ++G  
Sbjct: 528 TQNRGGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIP 587

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L+L +GE + T++   +D+ S    Y  F TK G V+R ++ +F  I ++GKIA+ 
Sbjct: 588 VVNLLNLTEGETVKTLVKVAKDDESK---YAFFVTKQGIVKRVEVQEFESIRQNGKIAIT 644

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V     +N+I++    G+ VRF  + +R   GR + GV G ++ +G     
Sbjct: 645 LREDDELVGVRMTNGDNEIIIGGSNGKAVRFDENEVRSM-GRTASGVIGFNVDEG----- 698

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                                            E+  +  D   EG              
Sbjct: 699 ---------------------------------EVVGIATDR--EG-------------- 709

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q+IL V+EKG+GKRT   ++R + R  KG++  ++++ N  G LV++  VN +++ +++S
Sbjct: 710 QYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKN--GNLVSLRAVNGDEEALIIS 767

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAESTE 910
           ++GT+IR  ++ I I  R+T GV + +  + + V  V  ++ + E  DE ++T+
Sbjct: 768 NEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAILQPTVEEPDEEQTTD 821


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/890 (42%), Positives = 554/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M I                                        VE +++
Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806



 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%)

Query: 533 IVREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVL 590
           IV ED+ V+ V+  GY KR P+  YR Q RGGKG     + D++  +  +  V+    ++
Sbjct: 705 IVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIM 764

Query: 591 FFSSLGFVYKEKVWRLPIG--SPQARGKALINILSLNQGERITTIMPFPED 639
             ++ G      + R+P+   S   R    + ++ L   + + T+    +D
Sbjct: 765 LITAAGI-----IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
 gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
          Length = 837

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/881 (43%), Positives = 551/881 (62%), Gaps = 89/881 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL  M ++G+  +K + K A
Sbjct: 8   LIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+
Sbjct: 68  RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ KDTVDF PNYD    EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            E +D   A++DNP+I +  LM+  I+GPDFPTG +ILGR GI+ A+ TGRGSI++R   
Sbjct: 188 TETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSIMVRSKH 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+E     + +IVVTEIPYQVNKA ++ KIA+LVREK+I  I  L DES+R+G R+VIEL
Sbjct: 248 HLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A  DVILNQLYR T LQ+ F VNM+AL    P++  +   L+ +V  + +V VRRTK
Sbjct: 308 RKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTVRRTK 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DRAH+L GL IA+ ++DE++ +IR S N   AR  LM++              
Sbjct: 368 FELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQ-------------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AILE+RL RLTGL RD I NE   L   I +  DIL++ 
Sbjct: 414 ------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANH 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+LGII+ EL  VK+     RRT I E   DM+DED I  ED+V+T++  GY+KR+P  
Sbjct: 462 DRVLGIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTD 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P     A+
Sbjct: 522 TYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  ++N+L+L++ E++  ++P  P+ ESS    +++F TK+G V+R  +S+F  I ++GK
Sbjct: 582 GLPVVNLLNLDKEEKVRALVPVRPDSESS----FLLFVTKNGLVKRTPMSEFDSIRQNGK 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V+  T +++I++    G+ VRF    IR   GR + GV+G ++  G 
Sbjct: 638 IAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV-DGS 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+  A                                       +S EG          
Sbjct: 696 IVVGAA---------------------------------------TSKEGT--------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L VSE G+GKRT+  ++R++ R  KG++  +V+  N+ G LV+V  VN ++  
Sbjct: 708 -----HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGDEDA 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++V++ G +IR+ V++I I SR T+GV + + A +E V  V
Sbjct: 761 MIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADEESVAKV 801


>gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
 gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
          Length = 904

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/896 (42%), Positives = 554/896 (61%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G   ++Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           +V+ +P  S  A+G+ ++N+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 RVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     +S       DA+ +         SA   L+S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDAEVENDESDDNDDSADSNLVS----RIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/831 (45%), Positives = 538/831 (64%), Gaps = 35/831 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F 
Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRG
Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723

Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776
           I LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K   
Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822


>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
 gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
          Length = 865

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/890 (42%), Positives = 542/890 (60%), Gaps = 84/890 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  ++I DEM+++Y+ YA++VI+ RA+PD+RDGLKPVHRR+L+GM  +G+ +NK 
Sbjct: 3   ESSSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+A++YD + RMAQ WSLR  L++GQGNFGS+DGD PAA RY
Sbjct: 63  FKKSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL++ A  LL DL KDT+DF+PN+D S +EP VL  + P++L+NG  GIAVGMATN+
Sbjct: 123 TEARLKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +A +DN DI ++ L++ I  PDFPTG +I G  G+K A  TGRG +VI
Sbjct: 183 PPHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIYGYQGVKKAMLTGRGRVVI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RGV+ IE T   RE+I+VTEIPY VNKA ++EK A LV+EKRI  I+D+RDESDR G R+
Sbjct: 243 RGVAEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELKR A   V LNQLY+YT+LQS F VN VAL   +PE   L  ++  FV  R EV+ 
Sbjct: 303 VYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKGRPEILNLRDMIYHFVEHRHEVIY 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L +A+ R H+L GL IA+ N+DEV+ +IR S + ETA+  L+++          
Sbjct: 363 RRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLT + RD I  E   +   IKE   I
Sbjct: 413 ----------------FELSEIQAKAILDIRLQRLTAMERDKIVAEHKQISELIKELEAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +   + IIK+EL  +KD     RRT I     D+ DED I  E+MV+T+SH GY+KR
Sbjct: 457 LADKLLRVDIIKEELTEMKDRYGDARRTDIEHMADDLTDEDMIPVEEMVITISHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  YR Q RGG G  G   +D+DF   LF+ STH  +L F++ G V+  K + +P  +
Sbjct: 517 TSLDEYRTQNRGGVGSRGTSKKDDDFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVA 576

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N+L + +G+ I  ++     +D     N Y+V  T+ G +++ +L  F + 
Sbjct: 577 KTAKGRAIQNLLQMEKGDSIRAVINVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRP 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ ++  D++L V+    EN+I+L  + G+ + F    +R   GR + GVRGI+
Sbjct: 637 RQNGIHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHFHEDQVRSM-GRTAAGVRGIT 695

Query: 729 LAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D +V+ M  V   DA                                         
Sbjct: 696 LDGDDNRVVGMVCVARDDAS---------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+GKR+S  D+RI+NR GKG+    ++  ++ G LVA+   
Sbjct: 716 ------------LLVVSETGYGKRSSIEDYRITNRGGKGVITMQIT--DKTGRLVAIKEA 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D D +IL++  G  IR+ ++++R+  RAT+GV +    +D+ + SV ++
Sbjct: 762 VDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKV 811


>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
 gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A
 gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
 gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans]
 gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
          Length = 833

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/888 (42%), Positives = 558/888 (62%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  L+ D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NPDI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+  G +++I+V EIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKTEIEEHHG-KQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++A +  V+
Sbjct: 302 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L   I E   
Sbjct: 413 -----------------FELSYEQAQAILDMRLQRLTGLERDKIEAEYKELIERIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++ELL +K++ +  R+T I       EDED I R+++V+T++H GY+K
Sbjct: 456 ILADHEKVLDIIREELLELKEKYNDERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q+RGG+G  G+   ++DFV  LF  ++H ++LFF++ G VY+ K + +P  
Sbjct: 516 RLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L + Q E I+TI+P    E    + Y+ F TK G  +R +LS F  I 
Sbjct: 576 GRTAKGIPIINLLQIEQDEYISTIIPI---EEFTEDHYLFFMTKDGIAKRTQLSSFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   DE+  V     + ++++ T+ G  +RF  + +R+  GR + GV+GISL
Sbjct: 633 RGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVRLM-GRTATGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                               +GD         D  V  +I E+ 
Sbjct: 692 ------------------------------------TGD---------DHVVGMDIVED- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+EKGFGKRT   D+RI  R GKGI+  ++++ N  G LV++  V+ 
Sbjct: 706 -------GQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKN--GPLVSLKVVSV 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  +++++  G +IR+ V +I +  R T+GV +   A+ E V +V R+
Sbjct: 757 DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVARV 804


>gi|153007330|ref|YP_001381655.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 891

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/908 (43%), Positives = 548/908 (60%), Gaps = 102/908 (11%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA 
Sbjct: 26  AQVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAG 85

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTE RL+
Sbjct: 86  VVGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLE 145

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A FLL D+ K+TVD+ PN+D S  EP+VL  R+PN+LVNG  GIAVGMATNIP HN+G
Sbjct: 146 RLADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMG 205

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+D    +I+NP + +  LM  I GPDFPT  +I GR GI+ AY  GRG+I +R  + I
Sbjct: 206 EVLDAVEHLIENPKVTIPELMRFIPGPDFPTAGIIQGRDGIRAAYEKGRGTIQVRARASI 265

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +RE IVVTEIPYQVNKA ++E IA+LVREKR+  I+DLRDES R+G RVVIELK
Sbjct: 266 EVHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELK 325

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A V+LN LY +T +Q+ F V ++A++G +P    L  +L+ FVA R +VV RRT++
Sbjct: 326 RDAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQPRILNLKELLERFVAHRRDVVTRRTRF 385

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+R H+L+GL IA+ +LDE++ +IR +P+ + AR  L+ R               
Sbjct: 386 ELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITR--------------- 430

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S  
Sbjct: 431 -----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKIILRLKEILASEK 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L+ +I  EL  VK      RRT I+    D   ED I  E+MVVTVSH GYVKR P+S+
Sbjct: 480 VLMEVIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSL 539

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGG+G++G   RDEDF+  +F+ STH+ +L FS  G VY  KV  +P     ARG
Sbjct: 540 YRAQRRGGRGKTGAATRDEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARG 599

Query: 616 KALINILSLNQGERITTIMP---FPEDES----------------------SWNNLYVVF 650
           K ++N++ L+QGE++  I+P    PE                              YV  
Sbjct: 600 KPIVNLVQLSQGEKVAAILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFM 659

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT+ G +++ +L  F +   +G IA+ ++  DE+++      ++ +LL+T  G  +RF  
Sbjct: 660 ATRRGLIKKTRLEQFSRPRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEE 719

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   GR + GV+GI+L  GD V+S   +  A    +                     
Sbjct: 720 SDVRAM-GRTAYGVKGITLEPGDAVVSAETIPAAPPQGE--------------------- 757

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        ILTV+  G+GKRT   ++R+ +R GKGI   
Sbjct: 758 -------------------------PAPTILTVTRNGYGKRTELAEYRVQSRGGKGIITI 792

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDE 889
             ++ N  G +VA   V+D ++++L+++ G LIR+P   I +  R T+GV +I   +K+E
Sbjct: 793 KTTERN--GPVVAAALVSDVEEVMLITNGGMLIRMPAKGISVIGRNTQGVRLITLESKEE 850

Query: 890 RVVSVERI 897
            VV V R+
Sbjct: 851 EVVGVARV 858



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 9/141 (6%)

Query: 764 LISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +I+G+  E+  L  D   + + G  ++   ++L  +E+ ++TVS  G+ KR     +R  
Sbjct: 484 VIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLYRAQ 543

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG- 879
            R G+G   T  +  +E   L ++F  + +  +++ SDKG +  + V+EI  A RA +G 
Sbjct: 544 RRGGRG--KTGAATRDE-DFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGK 600

Query: 880 --VVIFSTAKDERVVSVERIR 898
             V +   ++ E+V ++  +R
Sbjct: 601 PIVNLVQLSQGEKVAAILPVR 621


>gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 914

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/916 (42%), Positives = 547/916 (59%), Gaps = 89/916 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 35  KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDWNRPYRK 94

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+VMGKYHPHG+ AIYD + RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 95  SARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAAMRYTEI 154

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDG+ +EP+VL ++ PN+LVNG  GIAVGMATNIP H
Sbjct: 155 RLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPH 214

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ +PD  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V+R  
Sbjct: 215 NLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAK 274

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G R+VI
Sbjct: 275 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKSGMRLVI 334

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EVV RR
Sbjct: 335 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLVSVFLQHRREVVTRR 394

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+  LM +SW++  +++++ 
Sbjct: 395 TVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDSQLVREMLT 454

Query: 433 LID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                              D    +G DG   LS+ Q + IL++RL RLTGL +D I  E
Sbjct: 455 RTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQDKIVAE 514

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDC 532
                  + + LDIL+   R+  II QEL +++ E      + RR+ I     D+  ED 
Sbjct: 515 YKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARRSIIEHSAQDLCTEDL 574

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D++  LFI +TH  +L F
Sbjct: 575 ITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 634

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNN 645
           S+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P       FP D      
Sbjct: 635 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAMRSFPADR----- 689

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV  AT  G V++  L +F    + G IA  LD  D ++       ++D++L +  G+ 
Sbjct: 690 -YVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSDGGKA 748

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VRF  + +R  + R + GVRG+ L +G  VI+M                         L+
Sbjct: 749 VRFDENDVRPLS-RQARGVRGMLLEEGQSVIAM-------------------------LV 782

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           + D                           + Q +LT +E G+GKRT   ++    R  K
Sbjct: 783 AED---------------------------ETQSVLTATENGYGKRTGIVEYTRHGRGTK 815

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ A   S  N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + + 
Sbjct: 816 GMIAIQQSGRN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIAL 873

Query: 886 AKDERVVSVERIRESE 901
            +  ++  ++RI E++
Sbjct: 874 DEGAKLSGLQRIVEND 889


>gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
 gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
          Length = 849

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/906 (41%), Positives = 561/906 (61%), Gaps = 89/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++GV  +  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD   N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A IDN DI++D L++ ++ PDFPTG +I G  G++ A+ TGRG IV+R
Sbjct: 183 PHNLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIYGYDGVREAFKTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E+  G RE I+VTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR+G R+V
Sbjct: 243 GKAVMEEVQG-RECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R EVV R
Sbjct: 302 YILKRDAIPNIVLNKLYKYTALQSSFSVNNIALVHGRPQLLNLKDMIHYFVEHRHEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA +RAH+L GL IA  N+DEV+ IIR S N E AR  L++R           
Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E + +   I++  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++SR + IIK+EL  +KD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ANKSRRMNIIKEELEVIKDKYGDERRSMIEYAGGDVSIEDLIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+ G   R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKRQNRGGVGQKGSATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ + +++   +     +DE   NN YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEKDDKVKAFICTQNLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + ++L  K G+ +RF     R   GRN+ GVRGI L
Sbjct: 636 TNGINAITIKDGDELLEAKLTTGNSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGIRL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V                                   ND          
Sbjct: 695 ADDNDEVVGMVAV-----------------------------------NDM--------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  IL VSE G+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V 
Sbjct: 711 --------ESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR----ESEIVD 904
           D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++R    E E ++
Sbjct: 761 DEDGLMIINKSGIAIRMAVADLRVMGRATQGVRLINIKGKDSIAAVAKVRNEQQEEEAIE 820

Query: 905 EAESTE 910
            AE+ E
Sbjct: 821 GAENLE 826


>gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
 gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
          Length = 827

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/899 (43%), Positives = 545/899 (60%), Gaps = 86/899 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           + +EEKG+T V I+ EM+ +YL Y+++VI+GRA+PD+RDGLKPVHRR+LF   +M    N
Sbjct: 3   NNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRHN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y+K AR+ G+V+GKYHPHG+A++YD + RMAQD+SLR  L +GQGNFGS+DGD PAA 
Sbjct: 63  RPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  LL+DL K+TV F PNYD S   P VL +++PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DGC+ +I NPD  ++ LM+ I+GPDFPT  VI GR GI  AY  GRG +
Sbjct: 183 NIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIAGREGILQAYKKGRGIV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            I+ V+ I +   DRE+I++TEIPYQVNKA ++E +A+LVR+K+I  I+D+RDES R+G 
Sbjct: 243 TIKAVAEIVQVK-DREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREE 367
           R+V+ LKRG +A VILN+LY+YT +Q+ F + M+AL+   +P  F L G+L+AFV  R +
Sbjct: 302 RIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHRRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV +R  + L KA++RAH+L GL  A+ +++EV++ IR S     AR  LM +       
Sbjct: 362 VVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSK------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 SE Q  AILE+RL RLTGL RD I  EL  L  +I   
Sbjct: 415 -------------------FEFSERQAVAILEMRLQRLTGLERDKIVAELAELMKQIDWL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             +LS    +  II  EL  VK     PRRT+I   L D+EDED I  E MVVTV++ G 
Sbjct: 456 KFVLSDVREIYKIIVSELEDVKKRYADPRRTQITGDLSDLEDEDLIADEQMVVTVTNTGL 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+  YR Q+RGGKG  G+  ++ED+VTD+F  ST T +L F+  G VY  KV RLP
Sbjct: 516 IKRIPVEEYRVQKRGGKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRLP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           +G+  ++GK+L N++ L+ GE +  I+P  E      N Y V  T+ G +++  L  F  
Sbjct: 576 LGTRTSKGKSLANVVQLSNGESVRAILPVNE---FSENKYAVMLTEKGVIKKTSLDAFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+  D  D ++ V+    ++DI + TK G  +RF  + +R   GR + GV+ I
Sbjct: 633 PRTAGIIALTTDLDDGVIDVKISDGQSDIFIATKEGMSIRFNEADVREM-GRTARGVKAI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +LAK D V++M ++     D                                        
Sbjct: 692 TLAKDDVVVAMEVLEKNTKDT--------------------------------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+ KG+GKR+ + ++RI +R G GI     +  +++G ++    V
Sbjct: 713 ------------ILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTT--DKVGLVIGTKKV 758

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905
            DN ++IL +DKG +IR+ V +I +  R T+GV + +   KDE V  V  + E E   E
Sbjct: 759 ADNMELILSTDKGQVIRMKVTDISVLGRNTQGVRLINIDEKDETVTGVAVVAEDETATE 817


>gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
 gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
          Length = 858

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/900 (43%), Positives = 553/900 (61%), Gaps = 78/900 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I DE++ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 12  ILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKSYKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 72  RVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +H +L DL K+TVD+ PNYDG+ Q P V+  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 132 RKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--- 252
            EVV  C+A+IDNPDI +D L+EII GPDFPT A+I GR GI  AY TG+G I IR    
Sbjct: 192 NEVVTACLALIDNPDITIDELIEIIPGPDFPTAAIINGRAGIVQAYRTGKGRIYIRSRAV 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           V   EKT  D   I+++E+PYQVNKA ++EKIAELV+EK+I  IA+LRDESD+ G RVVI
Sbjct: 252 VETNEKTGKD--TIIISELPYQVNKARLIEKIAELVKEKKIEGIAELRDESDKDGLRVVI 309

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +V LN LY  T L+++F +N+VAL   +P    L  +L+ FV  R EVV RR
Sbjct: 310 EMKRGEMGEVCLNNLYSQTQLENVFGINIVALVDGQPRLLNLKQLLEYFVRHRREVVTRR 369

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI- 431
           T YLL +AR+R H+L GLA+A++N+D ++ +I+ S     A+ +L  + W   D+  ++ 
Sbjct: 370 TVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSAQGWELGDVSQMLA 429

Query: 432 ----------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                     DL ++  Y    DG  +LS  Q +AIL++RL +LTGL  + +  E     
Sbjct: 430 RAGESACRPDDLPENYGYI---DGKYHLSPAQVQAILDMRLQKLTGLEHEKLLKEYQEKL 486

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI E L IL    +L+ +I++EL ++ +E    RR+ I+E   D+  ED I  ED VVT
Sbjct: 487 EEIAEYLSILGDAVKLMTVIREELDAIVNEYGDERRSEIIESTRDLTAEDLITEEDRVVT 546

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   LS Y+AQRRGG G+S   ++DEDFV  L I STH ++L FS++G VY  
Sbjct: 547 ISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILCFSNVGKVYWL 606

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P+ S  ARG+ ++N+L L + ERIT+I+P  E        Y+  AT +G V++ +
Sbjct: 607 KVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYTEGH---YIFMATANGTVKKTE 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +    G  A++L+  D ++         D++L +  G+ VRF  + +R   GR +
Sbjct: 664 LTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNENDVRAM-GRTA 722

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI +A G ++IS+                         L+  D   + S+  +   
Sbjct: 723 KGVRGIRMADGQKMISL-------------------------LVPKDGGRMLSVSENGY- 756

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            G  SE                + KG G +   +  + S R+G            EI   
Sbjct: 757 -GKRSE------------FAEFATKGRGNKGMIF-MQASERNG------------EIIGA 790

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V VF   D D+++++SD+GT++R   +EI +  R T+GV +    + E VV VERI E E
Sbjct: 791 VQVF---DGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHVVGVERIEEPE 847


>gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
 gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
          Length = 894

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/896 (41%), Positives = 561/896 (62%), Gaps = 31/896 (3%)

Query: 13  EKGITSV---SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++G+ +V   S T+EM++SYL+Y ++ +  RA+PD+RDG+KPVHRRI+F M +     ++
Sbjct: 12  DEGVAAVKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADR 71

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K+VK A++ G+VMG+YHPHG+ AIYDA+ RM Q WSLR  LI+ QGNFGS+D DPPAA R
Sbjct: 72  KHVKSAKVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMR 131

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  L+ DLG+  VDFRPNYD S +EPVVL AR+PN+LVNGG GIAVGMATN
Sbjct: 132 YTESRLERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATN 191

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE ++ C+  + NP + LD +M ++ GPD PTG VI GR+GI+ A+ATGRG+I 
Sbjct: 192 IPPHHLGETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFATGRGAIR 251

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           + GV+ +E+    R +IV+ ++PY V KA  +EK+AELV EK+I  I+D+RDE SD+ G 
Sbjct: 252 VSGVASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREE 367
           R+VI++++ A   V+LN+L   T   +  +VNM  L+   +P    ++ +L  FV FR E
Sbjct: 312 RIVIDVRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRRE 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L K R+  H  +GL  A   +DE+V +IR S + + AR  L+   ++ S  
Sbjct: 372 VVRRRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTS-- 429

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            +   L+ +    +    T  LS+ Q RAILE+RL+RLTGL RD I      L +EI   
Sbjct: 430 GEFAQLLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGH 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
           L+IL+ ++ L G++++EL  +K      RRT I +  LD + DED +  +D+VVTV+  G
Sbjct: 490 LEILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVTAGG 549

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR  L  Y  +++            ED V    + +T T +LFF++ G  + E   +L
Sbjct: 550 YVKRTDLPAYMGRQKAADEAV------EDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKL 603

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +P  RG+AL+N L L   E +  I+  P+D ++   L ++F T  G +RRN  SDF 
Sbjct: 604 PEAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFA 663

Query: 667 QINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           ++N+ GK+A+KL+  +     +++SV   + E+D+ L ++ G C RF ++ +RV   R+S
Sbjct: 664 RVNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV GISL + D+VIS++++ H +A   ER  Y+   SA+ +      +E T        
Sbjct: 724 VGVAGISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTK------DETTG----EPA 773

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +  +R   ++  EQ IL+V+E GF KRTSS+ +RI+ R G+G+ A  ++  +  G L
Sbjct: 774 TFELPSDRMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLA--DRTGDL 831

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA+ PV + D +++ +D G   R    E+ I +R T+G   F+    + +VSV +I
Sbjct: 832 VALMPVEEQDVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVVKI 887


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/901 (42%), Positives = 552/901 (61%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI  I DLRDESDR G R
Sbjct: 243 MRAKATIEENN-NKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFG------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L   I E  +
Sbjct: 415 -------------------LSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E+  ++ Y+ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNYLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M +V                                                
Sbjct: 692 DDNDEVIGMDVV------------------------------------------------ 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            QEL      IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 704 DQELD-----ILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S+  D  E  
Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDSDEEG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
 gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
          Length = 814

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/897 (42%), Positives = 557/897 (62%), Gaps = 85/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  +++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVD + NYDG+ QEP VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTGA +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+I++TEIPYQVNKA ++EKIAEL R+K+I  I DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQ  F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVDGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+           
Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q +AIL++RL RLTGL RD I  E   L   I++  D
Sbjct: 413 -----------------FSLSEIQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L I+K+ELL VK++    RR+ I+EG +D +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVLEIVKEELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +    +L  +F+T+ G V+++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTSL--MFSTRFGIVKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T E DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D VI M +V     D  ++I                                    
Sbjct: 693 LSPDDYVIGMEVV-----DESKKIL----------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                        TV+E G GK + S +F + NR GKG++   V+K  + G +VAV  V+
Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSVS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + EI +E
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/890 (42%), Positives = 554/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M I                                        VE +++
Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/890 (42%), Positives = 554/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M I                                        VE +++
Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/901 (42%), Positives = 552/901 (61%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI  I DLRDESDR G R
Sbjct: 243 MRAKATIEENN-NKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFG------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L   I E  +
Sbjct: 415 -------------------LSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E+  ++ Y+ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNYLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M +V                                                
Sbjct: 692 DDNDEVIGMDVV------------------------------------------------ 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            QEL      IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 704 DQELD-----ILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S+  D  E  
Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDADEEG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
 gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
          Length = 835

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/890 (42%), Positives = 557/890 (62%), Gaps = 87/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD+++ + +T ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  
Sbjct: 2   SDQDQSR-VTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITS 60

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 61  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAA 120

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 121 MRYTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMA 180

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG +A+  NP+I ++ LME I GPDFPTGA I+G +GI+ AY TG+GS
Sbjct: 181 TNIPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIVGISGIRRAYETGKGS 240

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I+IR  + IE  +G +  I+V E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 241 IMIRSNARIEDHNG-KPWIIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTG 299

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIEL+R  +A+V+LN LY+ T+LQ+ F +N +AL   +P+   L   L  ++  +  
Sbjct: 300 MRIVIELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGRPQVLNLKETLVHYLDHQRV 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   + AR  LM++       
Sbjct: 360 VIRRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQ------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS  Q +AIL++RL RLTGL RD I NE N L   I E 
Sbjct: 413 -------------------FDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAEL 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+   ++L II++ELL ++D     RRT I  G   MEDED I R+++V+TVSH GY
Sbjct: 454 KAILADDEKVLEIIREELLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGY 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q+RGG+G  G+   DEDFV  LF+ ++H  +LFF++ G VY+ K + +P
Sbjct: 514 IKRIPVSTYRSQKRGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVP 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                ++G  +IN+L + + E I+T++P  E ++   N  ++F TK+G  +R +L  F  
Sbjct: 574 EQKRTSKGIPIINLLQIEKDEYISTVIPISEFDA---NHSLIFMTKYGVSKRTELDAFKN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G  A+KL   DE+  V       ++++ TK G  +RF  + +R+  GR + GV+G+
Sbjct: 631 IRKGGLFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLM-GRTATGVKGL 689

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D+V+ M I+   D+D                                        
Sbjct: 690 RLQSEDEVVGMDII-EPDSD---------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+E GFGKRT   ++R  +R GKGI+  +++  N  G LV++  V
Sbjct: 709 ------------ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKN--GQLVSLKVV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             +  +++++  G LIR+ V++I   SR T+GV +     +E V +V R+
Sbjct: 755 GSDHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVARV 804


>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
          Length = 815

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/888 (41%), Positives = 562/888 (63%), Gaps = 83/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I++EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ MM+ G+  +K Y K A
Sbjct: 7   IIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKPYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++Y A+ +MAQD+S R LL++GQGNFGSVDGD PAA RYTE R+
Sbjct: 67  RIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRYTEARM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TVDF PN+D S +EP+VL ARYPN+LVNG  GIAVGMAT+IP HNL
Sbjct: 127 SKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V  IDN D D+D L++ ++GPDFPT A I+G  GIK AY TGRG + +R  + 
Sbjct: 187 GEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVKVRAKAE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    ++QIVVTEIPYQVNKA ++EKIA+LV+EK++  I+DLRDE++R+G R+VIELK
Sbjct: 247 IEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRIVIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +A+++LN LY+++ L+  FS+ M+A+    P+   L  +L  ++  +++V+ RRT++
Sbjct: 307 RDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKDVITRRTQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ N+D V+ IIR S   + A+  L++                
Sbjct: 367 ELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEE--------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLTGL R+ I  E   L   I+    IL+   
Sbjct: 412 -----------FALSEIQAQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESILADEL 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +LLG+IK+E+L++K + + PRRT+I+    + + +D    ED+ +T++HLGY+KR+P   
Sbjct: 461 KLLGVIKEEMLAIKAKHEDPRRTQIIPAEGEFDVKDLFEEEDVAITLTHLGYIKRLPADT 520

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y++Q+RGG+G + +  R+EDFV +L   +T++++LFF++ G VYK   + +P G   ++G
Sbjct: 521 YKSQKRGGRGIAALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKG 580

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQINRSGKI 674
            A++N+L LN GE++   + F  D  + N   Y++ ATK+G V++ ++S+F  IN+SG I
Sbjct: 581 TAIVNLLQLNPGEKVARTITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNINKSGLI 640

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V       +++L T+    +RF  + +R   GR + GV+GI+L+K D+
Sbjct: 641 AINLKDGDELIGVNMTDGNQEVVLVTENAMSIRFNEADVRPM-GRTATGVKGITLSKDDR 699

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM ++                         GD   + S +N      ++ E R Q   
Sbjct: 700 VVSMNLIGE-----------------------GDNLLVVS-QNGFGKRSDVEEYRPQ--- 732

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                       G G +T    + I++++GK               +V    VN++D+++
Sbjct: 733 ---------IRGGKGIKT----YNITSKTGK---------------IVGSSLVNEDDEMM 764

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++  G LIR+ VNEI I  R T GV +  T ++  VVS+ +I+  +I
Sbjct: 765 MINSNGVLIRIRVNEISIFGRITSGVKLMRTDEEVEVVSIAKIKAEDI 812


>gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237]
 gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237]
          Length = 844

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/900 (42%), Positives = 558/900 (62%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV     +
Sbjct: 3   EGEKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A I+N DI++D L+  I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+  G RE I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKASFEEVQG-RECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +KR A  +++LN LY+YT+LQS FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YIIKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  LM+R           
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I +  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL  VK +    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMEIIKEELAEVKAKYGDERRSEINFAGGDLSMEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 ALSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++S+   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 SSKGRAIQNLISIESDDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   DE+L  +  T  ++I L  K G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 QNGINAIGIREDDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 AK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V                                          N+ EE
Sbjct: 695 ANDDDEVIGMVSV-----------------------------------------QNLEEE 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R++NR GKG++   +S  ++ G LVA+  V+
Sbjct: 714 -----------ILVVSEKGYGKRSSIEDYRVTNRGGKGVKT--ISITDKTGGLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
           D+D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ ++ + VDE E
Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDELE 820


>gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803]
 gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803]
          Length = 843

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/902 (41%), Positives = 567/902 (62%), Gaps = 87/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++++YD + RMAQ WS+R +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L DL K+TVD + N+D S  EPVV+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+N DID+D L++ I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             SH+E+  G RE +VVTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G RVV
Sbjct: 243 AKSHMEEIGG-REYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKR A  +++LN L+++T+LQS FSVN +AL   +PE   L  ++  FV  R +VVVR
Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGRPEMLNLKDLIYHFVEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+ +IR S N E AR +L++R           
Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I++   IL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + +IK ELL VK++    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDERRSQIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+ G   R+EDF+  LF+ + H  +LFF+  G  Y  +V+ +P GS 
Sbjct: 516 SLSEYKTQNRGGVGQKGSNTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++++  +++   +   +  DE   N+ +V+ ATK G V++ +L  + +  
Sbjct: 576 ASKGRAIQNLINIDPEDKVNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + ++L  + G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGNSQVMLGLRSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   ++D                                         
Sbjct: 695 ADDKDEVVGMIAVNDFESD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V+
Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D D +++++  G +IR+ V ++R+  RAT+GV + +   ++ + +V ++   E  D+ +S
Sbjct: 761 DIDDLMIINKSGIVIRMAVEDLRVMGRATQGVRLINLKGNDAIAAVAKVLHDE--DDLDS 818

Query: 909 TE 910
            E
Sbjct: 819 ME 820


>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
          Length = 855

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/892 (42%), Positives = 559/892 (62%), Gaps = 84/892 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           ++V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K AR
Sbjct: 41  SNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSAR 100

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE R+ 
Sbjct: 101 IVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMA 160

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K    LL+D+ KDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 161 KITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLG 220

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G   +
Sbjct: 221 EVVDGIIALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEV 280

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E +   +E I+VTE+PYQVNKA ++EKIA+LVR+K+I  I+DLRDE+DR G R+VIELK+
Sbjct: 281 ETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKK 340

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  +++ILN LY++T LQ+ F V M+AL    P    L  IL+ ++  R EV+ RRT++ 
Sbjct: 341 GEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQILQKYLEHRFEVITRRTEFE 400

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA++RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +                
Sbjct: 401 LKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAK---------------- 444

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        SE+Q +AIL++RL RLTGL RD I  E N L + I+E   ILS  S+
Sbjct: 445 ----------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSK 494

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           + GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +  Y
Sbjct: 495 IYGIIKEEGLKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTY 554

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R+Q+RGG G +     ++D V D++I     ++L F++ G V+  KV+ +P    QARGK
Sbjct: 555 RSQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGK 614

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + NI++L+  E+++TI+   E E + N   + F T++G V++++L+ F  I ++GK A+
Sbjct: 615 LIGNIINLDDDEKVSTIIKVREFEKNKN---LFFVTRNGVVKKSELTLFDNIKKAGKRAI 671

Query: 677 KLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +L+  DE++   + + + E++I   TK G  +RF    +R   G  + GVRGI+L   D+
Sbjct: 672 RLNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSM-GTGAAGVRGINLRDEDK 730

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++  AI+                                                  E+ 
Sbjct: 731 IVGAAII------------------------------------------------SSEMN 742

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853
             +  ILT++E+G+GKRT   ++R+++R GKGI     +K+NE  G +V V  V D+D+I
Sbjct: 743 KDDARILTITEEGYGKRTKLLEYRLTSRGGKGIIN---AKLNEKTGKIVDVKIVKDDDEI 799

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +L++ +GTLIR  V ++ +  R+  GV I     +E++ S+ +I E   +D+
Sbjct: 800 MLITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKIASIVKITEEPKLDD 851


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/888 (42%), Positives = 550/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   +    I +EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EEDVPRLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ ++YDA+ RMAQD+S R +L+ G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  L+ DL KDTVDF  NYDG+ +EP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NPDI +  LME I GPDFPTG  ILGR+GI+ AY+TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEILGRSGIRKAYSTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I +  G ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I +LRD SDR G  
Sbjct: 243 VRAKTEIVENKG-KQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMN 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R A+ +VILN L++ T+LQ+ F +NM+AL   +PE   L   L+ ++A + EV+
Sbjct: 302 IVIDVRRDANPNVILNNLFKQTALQTSFGINMLALVNGRPEVLNLKQTLEQYLAHQVEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L GL IA+ ++DE++ +IR S   E AR  L++R         
Sbjct: 362 RRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD +  E   +   I E   
Sbjct: 413 -----------------FELSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +++ +I++E+L++K++ +  RRT I      +EDED I R+++V+T++H GY+K
Sbjct: 456 ILASDEKVIDVIQEEILAIKEKFNDERRTVISASEEHLEDEDLIPRQNIVITITHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YRAQ+RGGKG  G+   D+DFV  LF  +TH +VL F++ G  Y+ K + +P  
Sbjct: 516 RLPISTYRAQKRGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G   IN+L  + GE I+T++P    E   ++ Y+ F T+HG  +R KLS F  I 
Sbjct: 576 GRTAKGIPAINLLPFDPGETISTVIPI---ECFDDDSYLFFVTEHGIAKRTKLSAFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+ L   D +  V       ++++ TK G  +RFP + +R+  GR + GV+GI+L
Sbjct: 633 KGGLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLM-GRTAGGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D V+ M +V       DE                                       
Sbjct: 692 SENDGVVGMEVV-------DE--------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+EKG+GKRT   ++R+ +R GKGI+  +++  N  G LV++  V D
Sbjct: 706 -------NQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKN--GPLVSLKMVAD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D I++V+  G +IR  V+ I    R T+GV +    + E V +V R+
Sbjct: 757 EDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVARV 804


>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
 gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/893 (42%), Positives = 554/893 (62%), Gaps = 86/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + +I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL+ M  +G+  +K + K A
Sbjct: 11  IKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIVADKPHKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+ + RMAQD+S R  L++G GNFGSVDGD  AA RYTE R+
Sbjct: 71  RIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAAAMRYTEARM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDTVD+  NYDG   EPVVL  R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 131 SKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGMATNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           GE +D   AV+DNPDI +  LME  I GPDFPTG  ILGR GIK AY TGRGSI+IR   
Sbjct: 191 GETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYILGRAGIKQAYETGRGSIMIRSKV 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     ++QI+VTEIPY VNKAA++EKIA LVREK I  I DLRDES+ +G R+VIEL
Sbjct: 251 KVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESNMEGIRIVIEL 310

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++   +DVILNQLYR TSLQ+ F VNM+ L    P++  L  +LK ++  + +V VRRT+
Sbjct: 311 RKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNAPQQLGLKDVLKCYLDHQIDVTVRRTR 370

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DRAH+L GL IA+ ++D ++ +IR S +   A   LM+               
Sbjct: 371 FELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLME--------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q +AIL+++  RLTGL R  I  E +SL  +I +  DIL++ 
Sbjct: 416 -----------NFGLSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNH 464

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           SR+L II+ EL  +K++ +  RR+ I++  +DM+DED I +ED+V+T++  GYVKR+P+ 
Sbjct: 465 SRVLEIIRSELTEIKEKYNDKRRSEIIDAEIDMQDEDLIPQEDVVITMTVNGYVKRIPVD 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG  G+ M ++D V     + TH  +L F++ G VY+ K +++P+ S  ++
Sbjct: 525 TYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSK 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L+L++ E++  ++P   + S    L+  F T  G V+R  + +F  I +SGKI
Sbjct: 585 GIPIVNLLNLDKDEKVLAMVPVERENSPAKFLF--FVTAQGIVKRVPIEEFENIRQSGKI 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++S +  T  + IL+    GQ +RF  + +R   GR + GV+G ++  G +
Sbjct: 643 AINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPM-GRTATGVKGFNV-NGSR 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M                                        +  EG           
Sbjct: 701 VIGMT---------------------------------------TDFEG----------- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              Q+IL+V+EKG+GK++   D+R++NR GKG++   V+  N  G LV +  VN ++  +
Sbjct: 711 ---QYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKN--GPLVFLRAVNGDEDCL 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +++++G +IR+ + ++ + SR T+GV + S   ++ V +V  + +SE  +E E
Sbjct: 766 IMTNEGIVIRISLEKVSVYSRNTQGVKLISVEDNQTVSTVAIVYKSEDDEETE 818


>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
 gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
          Length = 815

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/897 (42%), Positives = 557/897 (62%), Gaps = 85/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTG+ +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+IV+TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+ +         
Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++RL RLTGL RD I  E + L   I +  D
Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K ELL VK++    RR+ I+EG +D +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +    +L  +F+TK+G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTSL--IFSTKYGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V     D  ++I                                    
Sbjct: 693 LSPDDYVVGMEVV-----DESKKIL----------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                        TV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + EI +E
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814


>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
 gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
          Length = 830

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/886 (41%), Positives = 553/886 (62%), Gaps = 83/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ V I +EM+ SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M + G+ ++K Y K A
Sbjct: 26  ISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMKEAGITYDKPYKKSA 85

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+ A+YD+L RM Q++S+R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 86  RVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSIDGDSAAAMRYTEVRM 145

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +  +L D+ K+TV F+PNYDG+  EP VL A+ PN++VNG  GIAVGMATNIP HNL
Sbjct: 146 EKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTGIAVGMATNIPPHNL 205

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV DG + +IDNPD+ +  L   I+GPDFPT   ILG  GIK+AY TGRG I IR V+ 
Sbjct: 206 KEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGTEGIKSAYETGRGRIKIRSVAD 265

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   D+ +IVV+E+PYQVNKA ++E IA LVR+K+I  I+DLRDESDR+G R+VIEL 
Sbjct: 266 IEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRDESDREGIRIVIELA 325

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  + +VILNQLY++T LQ  + +  +AL    P+   L  +L+ ++  R +V+ +R++Y
Sbjct: 326 RNTNPNVILNQLYKHTQLQVTYGIINLALVDGVPKVLNLYELLQIYLNHRMDVIQKRSQY 385

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL I + NLDEV+  IR S     A+  L+++               
Sbjct: 386 QLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEK--------------- 430

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E Q +AIL++RL  LT + +D I +E N L  +I +  +I++S S
Sbjct: 431 -----------FQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIASDS 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   IIK EL  +K+     RRT I     ++ +ED I  ED+++T+++ GY+KR+P++ 
Sbjct: 480 RKYNIIKDELTELKENYADERRTDIQSSDEELSEEDLIPEEDVLITITNSGYIKRLPVTT 539

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGG+G +G+ ++D+DFV D+F+ ST   +L F++ G V  +KV+ +P GS Q+RG
Sbjct: 540 YSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQGSKQSRG 599

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+N+  L   E +++++   E    WN   ++ ATK+G V++  LS F    +SG IA
Sbjct: 600 KALVNLFELENDEAVSSMITVKEFSDDWN---LLMATKYGTVKKTPLSSFKTRKKSGLIA 656

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  DE+++V     +NDI+L +  G+ +RF  + +R   GR + GVRGI L   D++
Sbjct: 657 INLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPM-GRAAQGVRGIRLNPDDRI 715

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ISM                             DT               IS++   +L  
Sbjct: 716 ISM-----------------------------DT---------------ISDDENAKL-- 729

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                LT+++ G+GKRT   ++R  NR G+G+    ++  N  G +V V  V D+D I++
Sbjct: 730 -----LTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRN--GPVVNVKTVRDDDDIVV 782

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            S +G +IR+PV +IR+  R T+GV I +  ++++V+ V RI++ +
Sbjct: 783 TSYQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKKDD 828


>gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
 gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
          Length = 909

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/909 (43%), Positives = 556/909 (61%), Gaps = 49/909 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K  H LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H+L
Sbjct: 126 TKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPHHL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+  C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 NEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+VI+N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+D+++  I+ S NP  AR  L    W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G    +Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+G+I++EL  +  +    RRT+IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P  S  A+G+ ++N+L L+  E IT I+P  E      N YV  AT  G V+R +
Sbjct: 606 KVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTE---FLENHYVFMATASGTVKRVE 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  I  +G  A++L+  D ++ V     +  I+L +  G+ +RF  + +R   GR +
Sbjct: 663 LEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAETDVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ +     V S    L    D+DE                 D+EE T    DSSV
Sbjct: 722 KGVRGMRVTLAAAVDSEDTEL----DHDEL---------------DDSEEST----DSSV 758

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G L
Sbjct: 759 ---VSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GEL 813

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVERIR 898
           V    ++   +++L+SD GTL+R    E+ +  R  +GV +   +  E    VVS+E + 
Sbjct: 814 VGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSIEAVE 873

Query: 899 ESEIVDEAE 907
           + E ++  E
Sbjct: 874 DDEFIEVVE 882


>gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501]
 gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501]
          Length = 848

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/889 (42%), Positives = 552/889 (62%), Gaps = 85/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV     +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + R+AQDWS+R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ K+TVD + N+D S +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A ID+ DI ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIYGYDGVKEAFETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+  G RE IVVTEIPYQVNKA M++K  +L+ EK+I  IA +RDES+R+G R+V
Sbjct: 243 AKATFEEVQG-RECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+Y++LQS FSVN +AL G +PE   L  ++  FV  R +VVVR
Sbjct: 302 YVLKRDAIPNIVLNMLYKYSALQSSFSVNNIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +RAH+L GL IA  N+DEV+ IIR S N E AR  L++R           
Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSEVQ RAI+E+RL +LTGL +D +R+E   +   I++  DIL
Sbjct: 411 ---------------FELSEVQARAIVEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + IIK EL  V+D+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 AREERRMEIIKDELREVRDKYGDDRRSEINYAGGDLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  Y  +V+ +P GS 
Sbjct: 516 PLTEYKTQHRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   N+ +V+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ +   DE+L     T  + I L  K G+ +RF  S  R   GR++ GVRGI+L
Sbjct: 636 QNGIIAIGIREGDELLEARLTTGSSQIFLGLKSGKAIRFEESKTRPM-GRSASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V     D+DE                                      
Sbjct: 695 ADDNDEVIGMVSV----HDFDED------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   +SK  + G LVA+  V+
Sbjct: 714 -----------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISK--KTGGLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D+D +++++  G  IR+ V ++R   RAT+GV + +   ++ + +V ++
Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVAKV 809


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/892 (40%), Positives = 558/892 (62%), Gaps = 92/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y 
Sbjct: 8   EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGLSPEKSYR 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 68  KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K    +L D+ K+TVDF PN+DGS +EP V+ +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 128 AKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVGMATNIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG   +I++PD  +  LM  I+GPDFPT  +I+G++GI++AY TGRG +++R 
Sbjct: 188 HNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIMGKSGIRSAYETGRGKVIMRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G R +I+VTE+PYQVNKA ++E +AELV++KRI  I+D+RDESDR+G R+V+
Sbjct: 248 KAEIEEEKG-RYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDREGMRIVV 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR ++ +V+LNQLY++T +Q  F V M+AL   +P+   L  IL  ++ F++E++ RR
Sbjct: 307 EIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNEPKVLNLKEILVNYIEFQKEIIRRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  RAH+L GL IA+ ++DEV+ +IR S N + AR  LM +            
Sbjct: 367 TKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK------------ 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL++RL RLTGL RD I  E N L   IK   DIL+
Sbjct: 415 --------------FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILN 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +   +L IIK+EL  +K++    R+T I   + ++  ED I  E++VVT+++ GY+KR+ 
Sbjct: 461 NEDLVLKIIKEELHEIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNSGYIKRIS 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y +Q+RGGKG   +  +++DFV  +FI STH+ +LFF+++G VYK K + +P     
Sbjct: 521 SDAYSSQKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRT 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N+L ++  E +  ++   +D       Y++  TK G +++  L+ F  I ++G
Sbjct: 581 AKGTNIVNLLPVDANEHVREVIALKKDLEEG---YLIIGTKQGLIKKTSLNQFKNIRKNG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L V+    + +I++ T+ G  +RF    +R   GRNS GV+ ISL K 
Sbjct: 638 IIAINLKDEDELLKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPM-GRNSTGVKAISLRKD 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  +SM IV                                                   
Sbjct: 697 DVAVSMDIV--------------------------------------------------- 705

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVND 849
             ++++++LTV+E GFGKRT + ++ + NR+GKG+   R TD     + G +V+     D
Sbjct: 706 --VEDEYVLTVTENGFGKRTLASEYTLQNRNGKGLITHRVTD-----KTGKIVSARVAKD 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +D+++L++   T IR+ V+++ I +R+  GV +  T ++E+++++ +I   E
Sbjct: 759 SDELMLINSSNTAIRICVSDVSITNRSAMGVTLMRTYEEEKILAIAKISSDE 810


>gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
 gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
          Length = 935

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/933 (42%), Positives = 559/933 (59%), Gaps = 108/933 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF  NYDG+ + P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDGC+A+ID+  +  D LME I+GPDFPT  +I GR GI  AY TGRG + +R  + 
Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARAE 247

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE T    +E I+VTEIPYQVNKA ++EKIAELV++K+I  I +LRDESD++G RVVIEL
Sbjct: 248 IEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +RG +A+V+LN LY+ T ++S+F +N VAL   +P+   L  +L AF+  R EVV RRT 
Sbjct: 308 RRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRTV 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR++AH+L GLA+A++N+D V+ +I+ SP+   A+ +L+ + W   D+  +++  
Sbjct: 368 FELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLERA 427

Query: 435 D----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y +  DG  +LS  Q +AIL+LRL +LTGL R+ + N+   L  +I
Sbjct: 428 GGENAARPDGLDEQYGL-VDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL+ +I++EL +V++E    RR+ IV    D   ED I  E +VVT+S+
Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  P+  YRAQ+RGG+G+S   ++DED+V  L +  TH ++L F+  G V+  + +
Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDAGKVFWLRTF 606

Query: 605 RLPIGSPQARGKALINIL-SLNQGERITTIMPF------------PEDE----------- 640
            LP G   +RGK ++N+L +L   ERIT I+               E+E           
Sbjct: 607 ELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEEIVDADDVIDAV 666

Query: 641 ----------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                            +    ++  AT  G V+R  L++F +   SG IA+KL   + +
Sbjct: 667 DDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEHL 726

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           ++V       DI+L  + G+ VRF  S +RV + R + GVRGI LA+G  +IS+      
Sbjct: 727 VNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDLISLI----- 780

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                                   + EE  Q        ILT S
Sbjct: 781 ----------------------------------------VPEENGQ--------ILTAS 792

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E G+GKRT   D+    R G+G+ A  +++ N  G LV    V   + I+L+S++GTL+R
Sbjct: 793 EHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLVR 850

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             VN++  + R T+GV +   A  E +  +  I
Sbjct: 851 TGVNQVSTSGRNTQGVRLIRLADGEALCGLATI 883


>gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 904

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/893 (42%), Positives = 549/893 (61%), Gaps = 45/893 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I+L
Sbjct: 246 FEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+VI+N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       ++     G   ++Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+ +DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  A+G+ +IN+L L+  E +T I+P  E      N YV  AT  G V+R  
Sbjct: 606 RVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTE---FLENHYVFMATASGTVKRVD 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR +
Sbjct: 663 LEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ ++     +S      A+ + DE               S D E+   L   S +
Sbjct: 722 KGVRGMRVSIASNTLSEE---DAEIENDE---------------SDDNEDSAELSVVSRI 763

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +      E       +L  S  G+GKRT   DF    R GKG+ A   S+ N  G L
Sbjct: 764 VSLVVVPETGE-------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GEL 814

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           V    ++++ +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 815 VGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867


>gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21]
 gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21]
          Length = 862

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/890 (41%), Positives = 554/890 (62%), Gaps = 84/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM+ +GV   K Y K A
Sbjct: 18  IIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGVTSGKPYKKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++YD + RMAQ+WSLR  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 78  RIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  +L D+ KDT+D++ N+D S QEP VL  + PN+LVNG  GIAVGMATN+  HNL
Sbjct: 138 KRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNGASGIAVGMATNMAPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG VA IDN DI +  LM+ I+ PDFPTG VI G  G+++A+ TGRG +V+R  + 
Sbjct: 198 SEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIYGYAGVQDAFETGRGRVVMRAKAE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +  D+E I+VTEIPYQVNKA M+++ A+LV EK+I  I+ +RDESDR G R+V ++K
Sbjct: 258 IEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISAIRDESDRDGMRIVYDIK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A ++LN L++YT+LQ+ FSVN +AL   +P    L  ++  FV  R EV++RRTK+
Sbjct: 318 RDANASIVLNNLFKYTALQTSFSVNNIALVHGRPMLLNLKDMIHHFVEHRHEVIIRRTKF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++               
Sbjct: 378 ELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLMEK--------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q RAIL++ L RLTGL RD I+ E   L   I+    +L+   
Sbjct: 423 -----------FGLSDIQARAILDMTLRRLTGLERDKIKEEYAELMKTIEYLKSVLADEG 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + IIK ELL VK++    RR++IV    DM  ED I  E++V+T+SH GYVKR PL+ 
Sbjct: 472 LRMKIIKDELLEVKEKFGDERRSQIVHSAEDMRMEDFIDDEEIVITISHEGYVKRTPLTE 531

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG  G   ++EDF   +   S H  +LFF+  G  +  + + +P G+  +RG
Sbjct: 532 YRLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGTRTSRG 591

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ NI+++ + E+I   +     +D+    N +++  TK G +++  L  + +   +G 
Sbjct: 592 RAIQNIINIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGTIKKTSLEAYSRPRANGI 651

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
            A+ ++  D++L        ++I++  K G+ +RF  S +R   GR + GVRG++LA   
Sbjct: 652 NAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPM-GRTATGVRGVTLAGPD 710

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M                          IS +T + T                   
Sbjct: 711 DEVVGM--------------------------ISVNTNDAT------------------- 725

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL VSEKG+GKRT   D+R++NR GKG++  +V++  + G LVA+  V DND 
Sbjct: 726 -------ILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTE--KTGLLVAIKDVTDNDD 776

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++++  G +IR+ V+++R+  RAT+GV + +  +++++ S+ ++   E+
Sbjct: 777 LMIINRSGIVIRIAVSQLRVMGRATQGVRLINLKENDQIASITKVDHDEV 826


>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 808

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/886 (42%), Positives = 545/886 (61%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  ++ + K A
Sbjct: 8   VIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+ KYHPHG+ A+YDAL R+AQD++ R  L++G GNFGSVDGD  AA RYTE R+
Sbjct: 68  YIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +    +L D+ K+TV+F PNYDG   EP VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 ARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +IDNPD ++  LM +I+GPDFPTG  I+GR GI +AY TGRGSI +R  + 
Sbjct: 188 GEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIMGREGIWDAYRTGRGSIKVRAQAS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G R  IVV+EIPYQVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL+
Sbjct: 248 IEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIELR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LNQLY++T +Q  F V M+AL   +P    L  +L  ++  +++VVVRRT++
Sbjct: 308 RDANPQVVLNQLYKHTQMQDSFGVIMLALVEGEPRVLNLKEVLFYYLQHQKDVVVRRTRF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN+A  RAH++ GL IA+A+LDEV++ IR S  PE AR+ LM++               
Sbjct: 368 ELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEK--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q  AI+E+RL +LTGL R+ +  E   L  +I     +L    
Sbjct: 413 -----------FGLTEKQAEAIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDER 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++LGIIK ELL+VK +   PRRT I       E+ED I  ED+V+T++  GY+KR+PL  
Sbjct: 462 KVLGIIKDELLAVKKKFADPRRTAITSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLDT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGG+G + +  ++EDFV  LFI +TH   LFF++ G VY+ KV  +P    QA+G
Sbjct: 522 YRSQRRGGRGVTAMGTKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L +   E+ITT++P  E + +    Y+  ATK G V++  L+++    R G IA
Sbjct: 582 TAIVNLLYIGSEEKITTVIPVREFDPAQ---YLFMATKRGIVKKTPLNEYDTSRRDGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V+      +I+L T+ G  +RF    +R   GR + GV+GI+L   D+V
Sbjct: 639 ISLNEGDHLVDVKLTGGREEIILATRGGLAIRFLEEEVRP-TGRVTQGVKGINLVGDDEV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + M +     A  DE                                             
Sbjct: 698 VGMEV-----ARPDE--------------------------------------------- 707

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              F+L+V+  GFGKRT   ++R   R GKGI     +  N  G LVA+  V   +++++
Sbjct: 708 ---FLLSVTANGFGKRTRLSEYRAQARGGKGIINIKTTARN--GPLVAIQAVKGEEEVMM 762

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +S +G +IR+   +I +  RAT+GV +    + + +V+  ++   E
Sbjct: 763 ISAEGIIIRLKAQDIPVMGRATQGVTLMRLDRGDSLVAAAKVETEE 808



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q++   +++G  K+T   ++  S R G          +NE   LV V      ++IIL +
Sbjct: 609 QYLFMATKRGIVKKTPLNEYDTSRRDG-----IIAISLNEGDHLVDVKLTGGREEIILAT 663

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             G  IR    E+R   R T+GV   +   D+ VV +E  R  E +
Sbjct: 664 RGGLAIRFLEEEVRPTGRVTQGVKGINLVGDDEVVGMEVARPDEFL 709


>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
 gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
          Length = 812

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/882 (41%), Positives = 549/882 (62%), Gaps = 85/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G   +K Y K A
Sbjct: 8   VVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G+VMG+YHPHG++AIYDA  R+AQD+S R +LI+G GNFGS+DGDP AA RYTE R+
Sbjct: 68  GLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K   ++L D+ K+TVDF+PNYD   +EP VL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 AKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  + +I+NP   ++ LM +++GPDFPTGA+I+GR GI+ AY TGRGSI++R  + 
Sbjct: 188 AEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIMGREGIRQAYTTGRGSIIMRAKAR 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK +G++ +I+V EIPYQVNK+ +LE+IAELVR+KR+  I DLRDESDR+G ++VIEL+
Sbjct: 248 IEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIELR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +  ++LNQL++YT +Q  F V M+AL    P+   L  +L  ++  +++V+VRRT+Y
Sbjct: 308 RDVNPQIVLNQLFKYTQMQETFGVIMLALVDGVPKVLNLRDMLYYYLEHQKDVIVRRTRY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ N+D ++ IIR S + + AR  LM                 
Sbjct: 368 DLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILM----------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                    G   LSE Q +AIL++RL RL GL R+ I NE   L   I     +L S  
Sbjct: 411 ---------GEFNLSEKQAQAILDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L IIK+E+  +K++   PRRT I     D++ ED I  ED V+T++H GY+KR+P++ 
Sbjct: 462 MVLDIIKKEISEIKEKFADPRRTEITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVNT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQRRGG+G +G+  +++DFV  LF+ +TH ++LFF+  G VY+ K   +P  S  A+G
Sbjct: 522 YKAQRRGGRGVTGMGTKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L++   E++  ++P  E  +     Y+  AT+ G V++  L  +  + + G IA
Sbjct: 582 TAIVNLLAITGDEKVNAVIPVKEFAADQ---YLFTATRSGIVKKTSLQHYDTVRKEGLIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++ V+    ++DILL T+ G  VRF  + +R   GR + GV+GI L +GD V
Sbjct: 639 LTLDEGDELIGVKLTDGKSDILLATRNGMAVRFNETNVREM-GRTARGVKGIELTQGDFV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++    L A  D DE                                             
Sbjct: 698 VA----LDAVKDDDE--------------------------------------------- 708

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L ++E G GKRT   ++R  NR GKGI A  ++  N+ G +  +  V   D++++
Sbjct: 709 ----LLMITELGMGKRTPLSEYRKQNRGGKGILAMRLT--NKTGLMAGIKVVRPGDELMV 762

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +S +G +IR+ V+EI + SR T+GV I     +++VV++ R+
Sbjct: 763 ISAEGVIIRLNVDEINVLSRVTQGVSIMRMNANDKVVALARV 804



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 15/132 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EITS   D  VE  I+EE           ++T++  G+ KR     ++   R G+G+   
Sbjct: 485 EITSSGADIDVEDLIAEEDA---------VITITHNGYIKRLPVNTYKAQRRGGRGVTGM 535

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAK 887
              + + +  L   F    +  ++  +D+G + R+  +EI  ASR  KG  I    +   
Sbjct: 536 GTKEDDFVEHL---FVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKGTAIVNLLAITG 592

Query: 888 DERVVSVERIRE 899
           DE+V +V  ++E
Sbjct: 593 DEKVNAVIPVKE 604


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/889 (41%), Positives = 552/889 (62%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  ++ D+ KDT+D+R NYDGS +EP+V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  +P+I +  LM+ I GPDFPT  +I+GR+GI+ AY +G+GSI 
Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIVGRSGIRRAYESGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  +  +E I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 MRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L  ++  ++ V+
Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ +IR S   + AR  LM+          
Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL RD I NE   L   I E   
Sbjct: 413 ----------------NFSLSEKQAQAILDMRLQRLTGLERDKIENEYQELVKLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV G ++ +EDED I RE++++T++H GY+
Sbjct: 457 ILADEEKVLEIIREELNEIKERFNDERRTEIVAGGIEQIEDEDLIPRENIILTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G  +K K + +P 
Sbjct: 517 KRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +++GE +  ++   E    W   Y+ F TK G  +R  +SDF  I
Sbjct: 577 FSRTAKGIPIINMLGVDKGEWVNAMIRIEEFVDDW---YLFFTTKQGISKRTPVSDFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+      DI++ T+ G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RTNGLIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSM-GRTATGVKGIN 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M                                EI   K+D          
Sbjct: 693 LDSEDIVVGM--------------------------------EILEEKDD---------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKGFGKRT + ++RI  R GKG++  +++  N  G L++V  V 
Sbjct: 711 -----------VLVVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRN--GELISVKAVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR+ VN+I I  R T+GV +    ++  V +V ++
Sbjct: 758 GEEDLMLITAHGVLIRMDVNDISITGRNTQGVKLIRLDENSSVATVAKV 806


>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 894

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/892 (43%), Positives = 554/892 (62%), Gaps = 84/892 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG + +  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRARAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIPYQVNKA M+EKIAELVR+K++  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDI 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A+VILN LY+ T LQ+ F  NM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I  G +D +EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  Y++FATK+G V+R+ LS+F  IN++GK
Sbjct: 583 KGIPVVNAIELANDESISTMIAVNDLESEGN--YLIFATKNGIVKRSALSNFSHINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V     + DIL+ T     +RF  +++R   GR + GV+GI+L +GD
Sbjct: 641 IAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ +  V H+++                                               
Sbjct: 700 TVVGLD-VAHSES----------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 712 ---EDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++V++ G +IR+ V +I    RA +GV +     ++ V +V +++     DE
Sbjct: 767 MIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDE 818


>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
 gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
          Length = 815

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/886 (42%), Positives = 552/886 (62%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTG+ +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+I++TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+ +         
Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++RL RLTGL RD I  E + L   I +  D
Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K ELL VK++    RR+ I+EG +D +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSIIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +    NL  +F+TK+G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTNL--IFSTKYGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V     D  ++I                                    
Sbjct: 693 LSPDDYVVGMEVV-----DESKKIL----------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                        TV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATV 803



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  + +K ++F  INR GK   +A       +I++V++     D+++ T  G 
Sbjct: 711 ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVKSIAGNEDLMIMTDQGI 770

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +R  +S I    GR + GV+ I+L    +V ++ +    ++  DE
Sbjct: 771 IIRIDVSTISTL-GRTATGVKVINLVDDQKVATVTLAAKEESYEDE 815


>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
 gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
          Length = 894

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/892 (43%), Positives = 554/892 (62%), Gaps = 84/892 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG + +  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 189 TEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRARAE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIPYQVNKA M+EKIAELVR+K++  I DLRDE+  R G RVVI++
Sbjct: 249 IEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDI 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A+VILN LY+ T LQ+ F  NM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 309 RKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVRRRTE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R              
Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553
             LL +++ EL  +K+     RRT I  G +D +EDED I  E +V+T+SH  Y+KR+P+
Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  S Q+
Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N + L   E I+T++   + ES  N  Y++FATK+G V+R+ LS+F  IN++GK
Sbjct: 583 KGIPVVNAIELANDESISTMIAVNDLESEGN--YLIFATKNGIVKRSALSNFSHINKNGK 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+     DE+++V     + DIL+ T     +RF  +++R   GR + GV+GI+L +GD
Sbjct: 641 IAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITLREGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ +  V H+++                                               
Sbjct: 700 TVVGLD-VAHSES----------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V   + +
Sbjct: 712 ---EDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++V++ G +IR+ V +I    RA +GV +     ++ V +V +++     DE
Sbjct: 767 MIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDE 818


>gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
 gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
          Length = 868

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/904 (43%), Positives = 551/904 (60%), Gaps = 75/904 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L  M  +  +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +++R  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L D+ K+TV+F  NYDG+ Q P VL  R P++LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+I+NP+ID+D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAALINGRDGIVDAYRTGRGRIQMRAR 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    + +E I+ TEIPYQVNKA ++EKIAELV++K+I  I +LRDESD+ G R+V+
Sbjct: 246 HHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN L+  T LQ++F +N VAL   +P+   L  +L+AFV  R EVV RR
Sbjct: 306 ELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVDGQPKILNLKDMLEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GLA+A+AN+D V+  I+ SP    A+ +L+  +W   D+ ++++
Sbjct: 366 TIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD     G  DG  YLS  Q +AIL++RL +LTGL  D + +E      EI
Sbjct: 426 RAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL S+KDE    R T IVE    +  ED I  EDMVVT+SH
Sbjct: 486 AEYLQILASHERLMEVIREELESIKDEYGDGRLTEIVETRRHLTMEDLIAEEDMVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  P++ Y+AQRRGG+G+S   ++DEDF+  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 GGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ S Q+RG+ ++N+L L Q E ITTI+P  E        Y+  AT  G V++  L+ 
Sbjct: 606 DIPVASRQSRGRPIVNLLPLEQDEWITTILPVRE---YTEGHYIFMATSKGTVKKTDLTA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA++L+  D ++  E      D+LL + +G+ VRF  S +R   GR + GV
Sbjct: 663 FSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI +    +V+S+ I                             E  T L   +S  G 
Sbjct: 722 RGIKMQDDQKVVSLMI---------------------------PKEGATVLT--ASEHGY 752

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVA 843
                  E   K            G+ T      ++N R+GK + A  V   NE      
Sbjct: 753 GKRTDVDEFPTK------------GRGTQGVIGMVTNDRNGKLVGAVQVFDGNE------ 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                    I+L++++GTL+R  V+E+    R T+GV +    + ER+V +     + I+
Sbjct: 795 ---------IMLITNQGTLVRTRVSEVSTLGRNTQGVTLIRVQEGERLVGI-----APIM 840

Query: 904 DEAE 907
           DE E
Sbjct: 841 DEDE 844



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 28/247 (11%)

Query: 517 RTRIVEGLLDMEDEDCI-----VRE----DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           R R +  LL +E ++ I     VRE      +   +  G VK+  L+ +   R    G  
Sbjct: 615 RGRPIVNLLPLEQDEWITTILPVREYTEGHYIFMATSKGTVKKTDLTAFSRPR--SSGLI 672

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLN 625
            + + + D +    I   +  VL  S +G     K  R    + +A G+    +  + + 
Sbjct: 673 ALELEEGDTLMGAEITDGNQDVLLMSDVG-----KAVRFAESNVRAMGRTARGVRGIKMQ 727

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRD- 682
             +++ ++M  P++ ++     V+ A++HG  +R  + +F    R   G I M  + R+ 
Sbjct: 728 DDQKVVSLM-IPKEGAT-----VLTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRNG 781

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +++        N+I+L T  G  VR  +S +    GRN+ GV  I + +G++++ +A ++
Sbjct: 782 KLVGAVQVFDGNEIMLITNQGTLVRTRVSEVSTL-GRNTQGVTLIRVQEGERLVGIAPIM 840

Query: 743 HADADYD 749
             D D D
Sbjct: 841 DEDEDMD 847


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/890 (42%), Positives = 553/890 (62%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K +  LL D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NP+I +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R    IE+ +  R+ I+VTEIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR+G
Sbjct: 242 ITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 LRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGEPKVLNLKQTLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FALSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +L+F++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++ E +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLEVDKDEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D V+ M I                                        VE N++
Sbjct: 692 ITLDEDDHVVGMEI----------------------------------------VEENMN 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++RI +R GKG++  ++++ N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV +I    R T+GV +     D+ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVAK 806



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%)

Query: 770 EEITSLKNDSSVE-------GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           EE+T +K   + E       G I     ++L  ++   +T++  G+ KR  +  ++  NR
Sbjct: 471 EELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNR 530

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G+G++       N+   +  +   + +D I+  ++KG + R    EI   SR  KG+ I
Sbjct: 531 GGRGVQGMGT---NDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEIPEYSRTAKGIPI 587

Query: 883 FS---TAKDERVVSVERIRE 899
            +     KDE V ++  IRE
Sbjct: 588 INLLEVDKDEWVNAIIPIRE 607


>gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.]
          Length = 808

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/891 (40%), Positives = 555/891 (62%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + ++ ++I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++  +WNK Y
Sbjct: 3   ETEKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGDPPAA RYT
Sbjct: 63  KKSARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + A  +++DL K+TVD  PNYD S  EP +L A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 EIRLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV +    +IDNPDI  + L++I+ GPDFPT  +I GR+GI +AY+TGRG + +R
Sbjct: 183 PHNLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGIIHGRSGIYDAYSTGRGKVKVR 242

Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E    ++ E IVVTE+PY VNKA ++EKIAEL+R+K+I  +  +RDESDR+G R+
Sbjct: 243 ARVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            + LK+   + +I+N LY++T ++S F +  +A+   +PE  TL  IL+ FV  R+++++
Sbjct: 303 ALGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVVNNRPEVLTLKQILEYFVLHRKDIII 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTK+ L KA  RAH+L GL +A+ N+DEV+ +I+ S +P  A++ L+ R          
Sbjct: 363 KRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISR---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++ +Q +A+L++RL RLTGL R+ I  E ++L  +I    +I
Sbjct: 413 ----------------FDMTPIQAQAVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S + +L IIK EL  +K+E    RRT I++   ++  ED IV EDMVVTVS  GY+KR
Sbjct: 457 LASETLVLNIIKDELTQIKNEYGDLRRTEIIDETENISIEDLIVEEDMVVTVSKDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+Y +Q RGGKG++ ++ ++EDFV+ LF+ STH   LFF++ G VY  KV+ +P   
Sbjct: 517 TPASIYNSQSRGGKGKTAMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GKA++N+L+  +GE++TT++   + E      +V+ AT+ G ++R  +  + +   
Sbjct: 577 RTSKGKAIVNLLNFAEGEKLTTVLAVKDFEPGS---FVIMATRSGQIKRTDIMAYSRPRA 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+KLD  DE+++V       ++ + + +G+ +RF  S IR   GR + G+RG+ LA
Sbjct: 634 GGIKALKLDEGDELIAVRITDGTLNVFVCSAMGKSIRFHESDIRA-TGRVTGGIRGMRLA 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           KGD+++ M ++ H                                               
Sbjct: 693 KGDRIVGMEVLTHG---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +  V+E GFGKRTS  ++ +  R GKG+     S+ N  G +VA+  V+++
Sbjct: 707 -------QTLFAVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERN--GQVVAILIVDED 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D ++L++D G +IR P++ I + SR T+GV + +    E+V+   R+ E +
Sbjct: 758 DDLMLMADSGKIIRTPISGISVISRNTQGVKLINREATEKVIGAARLAEKD 808


>gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
 gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
          Length = 828

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/902 (41%), Positives = 555/902 (61%), Gaps = 92/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E+++  V +ID+      +  ++ +++II+GPDFPTG +ILG  GI+ AY TGRG I +
Sbjct: 189 NEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+VTE+PY VNKA ++EKIAE+VR+K+I  I DL D+S R+G RV
Sbjct: 249 RAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQSSREGMRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++  +A+V+LNQLY++T LQ  F V M+AL   +P    ++ +L  ++  +EEVV 
Sbjct: 309 VIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVNNEPRVMNILDMLNYYLQHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S   + A+ ELM+R          
Sbjct: 369 RRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMERFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ++AI+++RL  LTGL R+ + NE   L  +I+E   I
Sbjct: 421 ------------------LSEVQSQAIVDMRLRALTGLEREKLENEYQELMKQIRELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L ++D+    RRT I     D+  ED I +ED+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEILIIRDKYGDERRTSIGFDEFDISMEDLIPKEDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+    ED+V +LF+  TH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MSHDTFKSQNRGGKGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRMKGYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A++N+L L  GE+I+ ++P    E   +  Y+  ATK G V++  ++++  + +
Sbjct: 583 RTSRGTAIVNLLQLMPGEKISAVIPI---EEYKDGEYLFMATKKGLVKKTPITEYAHVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    + D+LL TK GQC+RF    +R   GR S+GVRG++LA
Sbjct: 640 TGLAAITLREEDELIEVKYTDNDRDVLLVTKYGQCIRFDEKDVRP-TGRTSMGVRGMNLA 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M +        D + C +                                   
Sbjct: 699 DRDEVIGMQL--------DSQGCDL----------------------------------- 715

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     L VSEKG GKRTS  +F   NR GKG++   +++  + G +V V  VN +
Sbjct: 716 ----------LIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITE--KTGNVVGVKAVNHD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVDEAES 908
           D++++++ +G +IR+    I +  R T GV + +  + + V S+ ++R  + E +D  E 
Sbjct: 764 DEVMIINTEGIIIRMKCEGISVLGRVTSGVKLINLQEGDIVASIAKVRKGDEEPIDSVED 823

Query: 909 TE 910
           T+
Sbjct: 824 TD 825


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/891 (42%), Positives = 552/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   I    I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EEKFSQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S+R +L+EG GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NP+I    LM+ I+GPDFPT A ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHNLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYILGRSGIRQAYTTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEHN-NKARIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN LY++T+LQS F +NM+A+   +P+  TL  +L  ++  + EVV
Sbjct: 302 VVIELRRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DEV+ +IR S + E AR  L+ R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFG------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I +E N L  +I E  +
Sbjct: 415 -------------------LSLEQAQAILDMRLRRLTGLEREKIEDEYNELLQKIAEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +++     RRT I  G   + DED I +E++V+T++H GY+K
Sbjct: 456 ILANEQLVLKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +D DFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++   E E   +N Y+ FATK G V++  + D+I I 
Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVI---EVERFDDNKYLFFATKQGIVKKTPIEDYINIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      ++++ T  G  +RFP S +R   GR + GV+GI+L
Sbjct: 633 KGGLIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFPESDVRSM-GRAATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD VI M                                       D  V G      
Sbjct: 692 DEGDSVIGM---------------------------------------DVVVPG------ 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+  G+GKRT   ++R  +R GKGI+  +V++ N  G +V +  V D
Sbjct: 707 --------QDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKN--GTVVGLKVVKD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GTLIR  +  I    R T+GV + +  +D+ V +V R  +S
Sbjct: 757 EEDLMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTDKS 807


>gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17]
 gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17]
          Length = 881

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/890 (42%), Positives = 545/890 (61%), Gaps = 83/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 SKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNP+IDL+ LM  I+ PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE      ++IV+TEIPY VNKA ++E IAELV+E +I  I++  DES RQG R+VI++K
Sbjct: 252 IESDES-HDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDESGRQGMRIVIDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTKY
Sbjct: 311 RDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R               
Sbjct: 371 DLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  D +  E   L   I     IL+   
Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++   PRRT I     +   ED    + +V+TVSH+GY+KR PLS 
Sbjct: 465 LCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   +++   +     +DE   N+ YVVFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ +   DE++ V      N++++  + G+ VRF  S IR   GR S GVRG+ L +GD
Sbjct: 645 IAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRLDEGD 703

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +   IV+                                  NDS  E           
Sbjct: 704 DAVVGMIVV----------------------------------NDSETEN---------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE G+GKR+   D+RI+NR GKG++   V++  + G LVA+  V D++ +
Sbjct: 720 ------VMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTE--KTGRLVAIKNVTDDNDL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           ++++  G +IR+ V + R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 772 MIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821


>gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 825

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/888 (43%), Positives = 547/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   I    I  EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EEQSSQIKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL DL KDTVDF PNYDG   EPVVL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG  A+I NPDI    LME I+GPDFPT   ++G +GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLREVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVMGHSGIRQAYTTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G + +I+V E+PYQV KA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRARAIIEDNGG-KARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN LY+ T +QS F +NM+AL   +P+   L  +L  ++  + E++
Sbjct: 302 VVIELRRDVNPNVVLNNLYKQTQMQSTFGINMLALVNREPKVLNLRDMLYHYLQHQIEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  L+ R         
Sbjct: 362 RRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L  +I E   
Sbjct: 413 -----------------FSLSLEQAQAILDMRLQRLTGLERDKIEAEYAELLAKIAEYKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II  EL  +K+     RRT I  G  ++ DED I RED++++++H GYVK
Sbjct: 456 ILADEQLVLDIISTELNEIKERFGDDRRTEITIGEDEILDEDLIPREDVIISITHSGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+QRRGG+G  G+  +D+DFV  LF+ +TH  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQRRGGRGVIGMDTKDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN+L + QGE +  ++P    E+  N+ Y+ FAT+ G V++  L D+  I 
Sbjct: 576 SRTARGTPIINLLQIEQGEVVNAVIPV---EAFDNDKYLFFATRQGVVKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D+++SV+      +I++ T  G  +RFP   +R   GR++ GV+GI L
Sbjct: 633 KVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQDVRSM-GRSATGVKGIQL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+VI M IV H + D                                          
Sbjct: 692 DEEDKVIGMEIV-HPEND------------------------------------------ 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+ KG+GKRT   ++RI +R GKGI+  +V+  N  G +V +  V +
Sbjct: 709 ----------VLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKN--GTIVGLKVVEN 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++ +++++  GT+IR  ++ I    R T+GV + +  +D+ V +V R+
Sbjct: 757 DEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDDAVSTVTRV 804


>gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
          Length = 973

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/930 (42%), Positives = 567/930 (60%), Gaps = 47/930 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +TS++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A
Sbjct: 49  MTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G VMG YHPHG++AIYD + R+AQ +SLR L+++GQGNFGSVDGD PAA RYTE RL
Sbjct: 109 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNFGSVDGDSPAAMRYTESRL 168

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  DTVDF PNYD S  EP VL AR PN+++NG  GIAVGMATNIP HNL
Sbjct: 169 TRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIINGSSGIAVGMATNIPPHNL 228

Query: 196 GEVVDGCVAVID------NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            EVV  C++++        PD++L  +++ + GPDFPTG  + GRT I  AY TGRG  +
Sbjct: 229 TEVVSACISLLQKSPQDTTPDLEL--VLQHVLGPDFPTGGTLFGRTNIPQAYRTGRGRFM 286

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA--DLRDESDRQG 307
           +R   HIE  SG R+ IVV EIPYQVNK+ ++E+IAELV E  I DIA  + RDESDR G
Sbjct: 287 MRAKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGIITDIARDEFRDESDRDG 346

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI +KRGA   ++LNQL+++T +Q  FS+  +A++  +P+   L   ++AF+  R E
Sbjct: 347 MRIVIGIKRGAEHQIVLNQLHKHTQMQESFSMIFLAVHNGQPKELPLDKAIRAFLDHRIE 406

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ-------- 419
           VV RRT +LL KARDR  +L+GL IA+ +LD+V+RIIR S +   AR  L          
Sbjct: 407 VVRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRADARENLFAYFSNRTIT 466

Query: 420 ------RSWNASDIKDLID--LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
                 R       K  ID  LI       G+  T+ L+  Q  AILEL+L RLT L  D
Sbjct: 467 LRGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQIDAILELQLYRLTQLSID 526

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           ++  EL  +   I E   IL+S ++L  +I  EL  ++D+   PRRT I++   ++  ED
Sbjct: 527 ELLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDPRRTIILDETAELGLED 586

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  E + VTVS+ GY+KR P+S YR QRRGG GR G+  RDEDFV  L I STH  +L 
Sbjct: 587 LIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDEDFVAQLIIESTHAYLLC 646

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY  K++ +P      +GKA+ +++ L  GE++ TI+P         N  ++FA
Sbjct: 647 FTNSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILPVKNLTEEGKN--ILFA 704

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T++G V++  L DF  +   G IA+ +D  DE+++    T  + + L T  G  +RF   
Sbjct: 705 TRNGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDVVFLATHDGMAIRFNEQ 764

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL------- 764
            +R   GR + G RGI+L KGD VI  A+    +A   +R    + +    +L       
Sbjct: 765 DLRPM-GRPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERAEALGLLAQLEDAITEA 823

Query: 765 ------ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                 + GD  ++ +    SS + +  +E+   L L    ILTVSE GFGKRT    +R
Sbjct: 824 TDASLVLEGDPSDVAAAPPVSSAKLDKLDEK---LGLTPCLILTVSENGFGKRTDVDRYR 880

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           + +R G G+   ++    + G + ++  V+D  +++L+S  G +IR+   ++R A R+T 
Sbjct: 881 LQSRGGTGV--INMKTGTKTGKVTSISLVDDTTEMMLISQFGKIIRIDTKQVRAAGRSTS 938

Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAES 908
           GV +    +D++V +   I   +  ++ E+
Sbjct: 939 GVKLLDLDQDDKVAAAMTIPPEDPKEKLEN 968


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/886 (42%), Positives = 547/886 (61%), Gaps = 86/886 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y 
Sbjct: 4   EGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YD+L RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GIK AY TGRG ++IR 
Sbjct: 184 HNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKKAYETGRGKVIIRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+VI
Sbjct: 244 KAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+V+LNQLY++T +Q  F + M+AL   +P   +L  +LK ++ F+EEV+ RR
Sbjct: 304 ELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  L+ + +N         
Sbjct: 364 TQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISK-FN--------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL+++L RLTGL R+ I  E   L   IK   +ILS
Sbjct: 414 ----------------LSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +  LL IIK EL  +K +    RRT IV G   D++ ED I   D+V+T++H GY+KR+
Sbjct: 458 DKDLLLKIIKDELNEIKVKYGDERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRL 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y AQRRGG+G   +  +++DFV  +   STH ++LFFS+ G VYK K +++P    
Sbjct: 518 PVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L + E+I  ++   E +      Y++  TK+G +++  L  +  I ++
Sbjct: 578 TAKGMNLVNLLPLEKDEKIQNVIYLKEFKPDR---YLIMGTKNGLIKKTSLDKYSSIRKN 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++SV   T + +I+  TK G  ++F  + +R   GRN+ GV+ I+L  
Sbjct: 635 GLNAINLRENDELISVRVTTGDCNIIYATKNGYAIKFDENDVRPM-GRNATGVKAITLRD 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM +                                             S+ER  
Sbjct: 694 DDEVVSMEVA--------------------------------------------SDERD- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT   ++ +  R GKG+    +S+  + G L+    V D D
Sbjct: 709 --------LLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVEDED 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++L++D G  IR+ V++I + SR   GV +  T ++E+VV++ ++
Sbjct: 759 ELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTIAKV 804


>gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 876

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 544/891 (61%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   N  Y KCA
Sbjct: 12  ILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSNNAYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R LL++GQGNFGSVDGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D + +EP V+  + PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNPDIDLD LM+ I+ PDFPTGA I G  G++ AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +  + ++IVVTEIPY VNKA ++E IAELV+E +I  I+++ DES RQG R+V++LK
Sbjct: 252 IE-SDDNHDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDESGRQGMRIVVDLK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ++A+VILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R +V +RRT+Y
Sbjct: 311 RDSNANVILNKLFKMTALQSSFSVNCIALVKGRPRLLGLKDCVKYFVEHRHDVTIRRTQY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L QR               
Sbjct: 371 ELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  D +  E   L   I     ILS   
Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K ELL VK++    RRT I     +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 465 LCKKVMKDELLEVKEKYGDARRTEIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  G   R++DF  +++  + H ++L F+  G  Y  K + +P G   ++G
Sbjct: 525 FREQARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++ + + +   +      DE   N+ YV+FATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNMLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVKKTCLEAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732
           IA+ L   DE++ V     EN++++  + G+  RF  + IR   GR + GVRG+ L    
Sbjct: 645 IAINLAEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTM-GRTATGVRGMKLDGDD 703

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M  V +AD                                               
Sbjct: 704 DAVVGMVPVNNADV---------------------------------------------- 717

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                + ++ VSE+G+GKR+   D+RI+NR GKG++   +++  + G LVA+  V D + 
Sbjct: 718 -----ETVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITE--KTGRLVAIKNVTDEND 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902
           +++++  G  IR+ V ++R+  RAT+GV +I  + K++ + SV ++  SE+
Sbjct: 771 LMIINKSGIAIRLSVADVRVMGRATQGVRLINLSKKNDIIASVCKVMSSEL 821


>gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126]
 gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126]
          Length = 839

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/891 (41%), Positives = 544/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E + I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G+  N+
Sbjct: 3   EGENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR  +++GQGNFGS+DGD PAA R
Sbjct: 63  PYKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  +L D+ K+TVDF+ N+D S +EP VL A+ PN+L+NG  GIAVGMATN
Sbjct: 123 YTEARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV+G  A IDN DI +  LME I  PDFPTGA I G  G+K A+ TGRG IV
Sbjct: 183 MAPHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIYGYQGVKAAFETGRGRIV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     RE+++VTEIPY VNKA M+EK A LV EK+I  I+D+RDESDR G R
Sbjct: 243 MRAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V E+++ A  +V+LN LY+YT LQ+ FSVN VAL   +PE   L  ++K +V  R +V+
Sbjct: 303 IVYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGRPETLNLKDMIKHYVEHRHDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L +A+ RAH+L G  IA+ NLDEV+++IR S +PE AR  LM +         
Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q +AIL++RL RLTGL R+ I  E   +   I+    
Sbjct: 414 -----------------FKLSEIQAKAILDMRLQRLTGLEREKIIQEYEEIKKLIEYLES 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+     + IIK E+  ++D     RRT I+    +  DED I  ED+V+T+SH GY+K
Sbjct: 457 VLADEGLRMNIIKDEMQEIQDRYGDERRTEIIHSAEEFTDEDMIPNEDVVITLSHQGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L+ Y+ Q RGG G  G   +D+DF   LF+  TH  +L F+ LG VY  KV+RLP G
Sbjct: 517 RTLLNEYKTQGRGGVGSKGAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+A+ N++++   + +  ++     +D    NN ++V  T+ G +++  L  + +
Sbjct: 577 SKTSKGRAIQNLINIESEDSVRAVINVENLDDADYINNNFLVMCTEKGTIKKTTLEAYSR 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G  A+ ++  D +L+V+    +N+I++  + G+ +RF  S +R   GR + GVRGI
Sbjct: 637 PRANGINAISINEGDRLLNVKLTNGDNNIIIAARSGRAIRFHESNVRPM-GRTAAGVRGI 695

Query: 728 SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L  G D V+ M  +   +A+                                       
Sbjct: 696 TLKDGKDIVVEMVAITRENAN--------------------------------------- 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L VSEKG+GKR+   D+RI+ R GKG++  +V++  + G LVA+  
Sbjct: 717 -------------LLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTE--KTGELVAIKE 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V D+D +++++  G  IR+ V  +R+  RAT+GV +    +++ + SVE++
Sbjct: 762 VIDSDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVNENDSISSVEKV 812


>gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
          Length = 978

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/917 (42%), Positives = 567/917 (61%), Gaps = 45/917 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A
Sbjct: 50  MNSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 109

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G VMG YHPHG++AIYD + R+AQ +SLR  LI+GQGNFGSVDGDPPAA RYTE R+
Sbjct: 110 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRM 169

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  DTVDF PNYD S  EP VL AR PN++VNG  GIAVGMATNIP HNL
Sbjct: 170 TRLAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNL 229

Query: 196 GEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV++  +A++         DL+ ++E ++GPDFPTG  + GR  +   Y TGRG  ++R
Sbjct: 230 TEVLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLYGRGNLVQTYKTGRGRFMMR 289

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E+ +G R+ I+ TEIPYQVNK+ ++++IAELV EK + DI+D+RDESDR G R+V
Sbjct: 290 AKCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIV 349

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRGA  +++LNQLY++TS+Q  FS+  +A++  +P+   L   + AF+  R +VV R
Sbjct: 350 IELKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQPKELPLNEAIWAFIEHRIDVVRR 409

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------AS 425
           RT +LLNKAR+R HVL+G  IA+ +LD+V+RIIR S +   AR  L     N       +
Sbjct: 410 RTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGT 469

Query: 426 DIKDLIDLIDDSSYTI-------------GSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++ +   +D + Y I              + GT+ LS  Q  AILEL+L RLT L  D+
Sbjct: 470 ELQGVT--LDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDE 527

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + NEL ++   I E   IL+S  +L  +I +EL  ++D+    RRT I++   ++  ED 
Sbjct: 528 LLNELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDARRTTILDESTELTLEDL 587

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + VTVS+ GY+KR P+S YR QRRGG GR G+  R+EDFV  L I STH  +L F
Sbjct: 588 IADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTHAYLLCF 647

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY  KV+ +P      +GKA+ +++ L  GE++ TI+P    + +    YV+FAT
Sbjct: 648 TNSGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPV--KDLAEEGKYVLFAT 705

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           ++G V++  L DF  +   G IA+ +D  DE+++      E  I L T  G  +RF    
Sbjct: 706 RNGTVKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRFNEQD 765

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER--ICYMKHMSAQRRLISGDTE 770
           +R   GR + G RGI+L K D VI  A+    +A   +R  +     ++AQ   +  +  
Sbjct: 766 LRPM-GRPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLELAAKTGLTAQVEAVLDEAG 824

Query: 771 EITSLKNDSSVEGN------ISEERCQELK-------LKEQFILTVSEKGFGKRTSSYDF 817
           E  + +     E        ISE    +L+       L    IL+VS+ G+GKRT    +
Sbjct: 825 ESAAAQPLELAEPGELGAPVISEAAAAKLQQLDEKLGLTPCLILSVSDNGYGKRTDVDSY 884

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+ +R GKG+   ++    +IG + ++  V+D  +++++S  G +IR+    +R A RAT
Sbjct: 885 RLQSRGGKGV--INMKSTPKIGKVASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRAT 942

Query: 878 KGVVIFSTAKDERVVSV 894
            GV +     D++V + 
Sbjct: 943 MGVKLLDLDTDDKVAAA 959


>gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
 gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
          Length = 859

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/898 (41%), Positives = 551/898 (61%), Gaps = 82/898 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +++ +++  I  ++I ++M+ +Y+ Y+++VI+GRA+PD+RDGLKPVHRR+LFGM ++G  
Sbjct: 4   NTENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGMNELGNN 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI GEVMGK+HPHG+A+IYD + RMAQ WSLR +L++GQGNFGSVDGD PA
Sbjct: 64  SNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSVDGDMPA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RLQ+ A  +L+D+ K+TVDF  N+D + +EP VL  R PN+L+NG  GIAVGM
Sbjct: 124 AMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGASGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNI  HNL EVVDG +A IDN DI ++ L++ ++ PDFPTG +I G  G+K  + TGRG
Sbjct: 184 ATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIYGYEGVKQGFETGRG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+RG  ++E +   RE++V+ E+PYQ+NKAA+ +KIA+L  +K I  I++ RDESDR 
Sbjct: 244 RVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEARDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI+LKR A A+V++NQLY+Y+ LQ+ + +N VAL   +P    L  +L  FV FR 
Sbjct: 304 GMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVKGRPRVLNLKDMLSEFVDFRH 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVVVRRT++ L KA ++AH+L G  IA+ +LDEV+ +IR S  PE A+  LM R      
Sbjct: 364 EVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTR------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q++AILELRL RLTG+ RD I+ E + +   I  
Sbjct: 418 --------------------FELSEIQSKAILELRLQRLTGMERDKIKEEYDEVMKLIAY 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +ILS       IIK EL  VK      R+T I     +M  ED I  ED+V+T+SHLG
Sbjct: 458 LKEILSDEGLRFKIIKDELEDVKKRFGDERKTEIQYLASEMRMEDIIAEEDVVITISHLG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR     YR Q+RGG+G  G   R+ED++  LF+ STH ++LFF+  G  Y  KV+ +
Sbjct: 518 YIKRTSAYDYRQQKRGGRGALGGKTREEDYIEHLFVASTHHTMLFFTEKGRCYWLKVYEI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           P G    +G+A+ N+++L   ++I  I+   +  D+   ++ Y+V  T +G +++  L D
Sbjct: 578 PEGEKSGKGRAIQNLINLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIKKTLLED 637

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +  ++G  A+ ++  D++L  +     + I++  K G+ +RFP + +R   GR ++GV
Sbjct: 638 FSRPRQNGVNAITINEGDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVR-DTGRGAIGV 696

Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI +    D+V+ M             IC  K                           
Sbjct: 697 RGIEVDNDKDEVVGM-------------ICVNKE-------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E R          +L VSEKGFGKRT   ++RI+NR GKG++  ++++  + G+L+A
Sbjct: 718 --DETRT---------VLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITE--KTGSLIA 764

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  V + D +++    G  IR+ V +IR A RAT+GV +      + + +V R+ E E
Sbjct: 765 ILDVTEKDDLMITCKSGITIRMAVADIREAGRATQGVRLIRLDDSDEIAAVARLDEQE 822


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/893 (42%), Positives = 550/893 (61%), Gaps = 86/893 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V I+ EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y 
Sbjct: 4   EGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R  L+ G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K    +L D+ K+TVDF PN+DG  QEP V+ AR+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G   +IDNP++ +  LM  I+GPDFPT  +ILG+ GI++AY TGRG +++R 
Sbjct: 184 HNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIILGKLGIRDAYETGRGKVIVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G R +I+VTEIPYQVNKA ++E IA+LV++K+I  I+D+RDESDR+G R+VI
Sbjct: 244 KTDIEEEKG-RHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +VILNQLY++T +Q  F + M+AL   KPE   L  IL  ++ F++EV+ RR
Sbjct: 303 ELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNKPEVLNLKQILVHYLEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  RAH+L GL IA+ ++DEV+ +IR S N E A+  LM  S+N         
Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMN-SFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++RL RLTGL R+ I NE   L   I    D+L+
Sbjct: 413 ----------------LSEKQAQAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL  +K++    RRT I +   ++  ED I  +++VVT++H GY+KR+ 
Sbjct: 457 KEELVLKIIKEELTEIKNKYGDDRRTEIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIA 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y AQ+RGGKG   +  +++DFV  +F+ STH ++LFF++ G VYK K + LP     
Sbjct: 517 ADTYSAQKRGGKGIQAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  LIN+L +   E+I  ++ F E + +    Y +  T+ G +++ ++S +  I ++G
Sbjct: 577 AKGVNLINLLPIETNEKIQAVITFKEFDKTN---YFIMGTRQGLIKKTQVSQYSSIRKNG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V   T E++IL+ TK G  +RF    +R   GR + GV+ I+L K 
Sbjct: 634 LNAINLREDDELIGVRMTTGESEILVFTKNGYAIRFNERDVRPM-GRTATGVKAITLRKE 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  ++M IV           C                            EG         
Sbjct: 693 DIAVAMDIV-----------C----------------------------EG--------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q +L +SE GFGKRT   ++    R GKG+    +++  + GA+V    V D D+
Sbjct: 705 -----QDVLVISENGFGKRTPVSEYTPHRRGGKGMITYKITE--KTGAIVGARVVKDEDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++LV+     IR+ V+ I   SR   GV +  T ++++VV++ +I   E V++
Sbjct: 758 MMLVNSSNVAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIAKINYDENVEK 810


>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
 gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 849

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/888 (42%), Positives = 548/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  S+IE+ +G R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR G R
Sbjct: 242 IRAKSNIEEENG-RHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  +V F++EV+
Sbjct: 301 IVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYVDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDE--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 412 -----------------FALSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LL +IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLEVIKNELLEIKAKYGDERRTSIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +        Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEPDEKIQTVLTVTDKRRDG---YLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R   GR + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVR-HMGRTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD +                +C                                    
Sbjct: 691 -KGDDIA---------------VC------------------------------------ 698

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++ + E+ +L +SE GFGKRT   ++++ +R G G+    +S+  + G LV       
Sbjct: 699 -MDIAVDEEELLVISENGFGKRTPVNEYKVQHRGGVGLITYKISE--KTGKLVGATICKL 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D+++L++  G  IR+ V++I   SR+  GV +  T ++E++V++ +I
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEKIVAIAKI 803


>gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 822

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/901 (41%), Positives = 561/901 (62%), Gaps = 88/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM             
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        G   LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 409 -------------GKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S  GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSDKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++     D DE                                        
Sbjct: 693 DGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  V  I    R+T GV +    +D ++V   +V+ + + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVDAVEKEEVGTENE 817

Query: 908 S 908
           +
Sbjct: 818 T 818


>gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
 gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
          Length = 816

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/887 (42%), Positives = 555/887 (62%), Gaps = 88/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I +EM+ +YL YA++VI+ RA+PD+RDGLKPV RRIL+ +  +G+  NK + K A
Sbjct: 10  VLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YD + RMAQ++S R  L++G GNFGS+DGD  AA RYTE R+
Sbjct: 70  RVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYTEVRM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +    LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGM+TNIP HNL
Sbjct: 130 ARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG VA+IDNPD+++  LM+II+GPDFPTG +I+G+  I  AY TGRG + +RG + 
Sbjct: 190 GEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLKVRGKAR 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    + +I++TEIPYQVNKA ++EKIA LVR+++I  I+DLRDESDR+G R+VIELK
Sbjct: 250 IEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G    VILN+LY+YT LQ  + V M+AL    P   TL  +L  ++  ++EVV RRTKY
Sbjct: 310 KGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVVTRRTKY 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+AN+D++V++IR +P+ +TARR L++ ++N            
Sbjct: 370 QLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIE-NFN------------ 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q  AIL +RL RLTGL RD I  E   L  +I     IL+   
Sbjct: 417 -------------LTEKQAEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEG 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +LLGIIK ELL +K++    RRT I    +D++ ED I  E +V+T++H GY+KR+P+ +
Sbjct: 464 KLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDI 523

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG  G+  ++EDFV  +F  STH   LFF++ G VY+ +V+ +P  S QARG
Sbjct: 524 YRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARG 583

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
            A++N+L L + ERITT++P  E DE      Y+V  T++G +++  L+++ +   +G I
Sbjct: 584 TAIVNLLELEEEERITTVIPIREFDEER----YLVMVTRNGMIKKTPLAEY-ESRYTGLI 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + L   DE++ V+       +++ T  G+ + F  + +R   GR ++GV+ I+L  GD 
Sbjct: 639 GLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSM-GRTAMGVKAITLEDGDY 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M +    D++ D+                                            
Sbjct: 698 VVGMGV----DSEGDD-------------------------------------------- 709

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++EKG+GKRT   ++R+ +R GKG+   ++++ N  G L  V  V ++  +I
Sbjct: 710 -----LLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN--GNLAGVKVVREDHDLI 762

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           L++ +G +IR  V  I    R T GV +    + +RVVS+ RI   E
Sbjct: 763 LITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEE 809



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 20/220 (9%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +V V+  G +K+ PL+ Y ++     G  G+ +RDED + D+     + SV+  +  
Sbjct: 610 ERYLVMVTRNGMIKKTPLAEYESRY---TGLIGLTLRDEDELIDVKYTDGNQSVIIVTHR 666

Query: 596 G--FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           G    +KE   R        R    +  ++L  G+ +  +      +S  ++L V+  T+
Sbjct: 667 GKAIHFKENEVR-----SMGRTAMGVKAITLEDGDYVVGMGV----DSEGDDLLVI--TE 715

Query: 654 HGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  L ++   +R GK    A   +    +  V+   +++D++L T  G  +R  +
Sbjct: 716 KGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAGVKVVREDHDLILITSEGIIIRTRV 775

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             I    GRN++GV+ I L +GD+V+S+A +   + D +E
Sbjct: 776 EGISRL-GRNTLGVKVIRLEEGDRVVSLARISPEEKDIEE 814


>gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
 gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
          Length = 861

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/895 (42%), Positives = 547/895 (61%), Gaps = 92/895 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM  +GV  N+ Y K A
Sbjct: 7   IIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YD + RMAQ WSLR  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  +LDDL K+TVDF PN+D S QEP VL ++ PN+LVNG  GIAVGMATN+  HNL
Sbjct: 127 RKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMAPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  +  +DN DI+ + L++ ++ PDFPTG +I G  G ++A  TGRG IVIR  + 
Sbjct: 187 GEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIYGVDGARDALLTGRGRIVIRAKAE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ SG REQI+VTEIPYQVNKA M++K A+LV +K+I  I+D+RDESDR G R+V ELK
Sbjct: 247 IEE-SGGREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIVYELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +V+LN+LY+YTSLQS FS+N + L   +P    L  ++  FV FR EVVVRRTKY
Sbjct: 306 RDAIPNVVLNKLYKYTSLQSSFSINNICLVDGRPRLLNLREMITEFVKFRHEVVVRRTKY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA  N+DEV+ IIR S +PE AR  LM+R               
Sbjct: 366 DLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMER--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q+RAI+E+RL +LTGL +D +R E   L   I +  DIL+   
Sbjct: 411 -----------FALSDLQSRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + IIK EL+ ++ +    RR+RI     +M+ ED I  E++V+T+SH GY+KR  L  
Sbjct: 460 RRMQIIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRTNLDE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   RD+DF+  LF+ + H  +L F+  G  +  +V+ +P G+  A+G
Sbjct: 520 FKVQSRGGMGSKGSTTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKG 579

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++ Q ++I   +   +  D+    N ++V  TK G +++  L  + +   +G 
Sbjct: 580 RAIQNLLNIEQDDKIKAYVKVKDLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPRANGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
            A+ +   DE+L        N+++L TK G+ +RF  + +R   GRN+ GVR ++L    
Sbjct: 640 NAITIRENDELLEARLTDGTNEMVLATKAGRAIRFNEAKVRPM-GRNASGVRAVTLQNDT 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M             IC                                       
Sbjct: 699 DEVVGM-------------IC--------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIGALVAVF 845
           +K   + I+ VSEKG+GKR+   D       +RI+NR GKG++  +++  ++ G L+A+ 
Sbjct: 707 VKDNTETIMVVSEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINIT--DKTGPLLAIK 764

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            V D D +++++  G  IR+ ++ IR+  RA +GV + +      + +V R+  S
Sbjct: 765 TVADEDDLMIITKAGVTIRMHIDGIRVMGRAAQGVRLINLKGTAAIAAVARVPRS 819


>gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
 gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
          Length = 846

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/888 (41%), Positives = 557/888 (62%), Gaps = 83/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ+WS+R +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D S  EPVV+  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG VA ID+ DI++D LM+ I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S +E+ +G +E I+VTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKSSLEEVNG-KECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKR A  +++LN L+++T+LQS FSVN +AL   +PE   L  I+  FV  R EVVVR
Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGRPEMLNLKDIIYHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DRAH+L GL IA  N+DEV+ +IR S N E AR++L+ R           
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +R E + +   IK+  DIL
Sbjct: 411 ---------------FELSELQARAIVEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + +IK ELL VK++    RR+ I     D+  ED I  E +++T+SH GY+KR 
Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+ G   R+EDF+  LF  + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLNEYKRQNRGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +R+   +   +  DE   NN +V+ ATK G V++  L  + +  
Sbjct: 576 SSKGRAIQNLINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L  K G+ +RF     R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKEDDELLEAKLTTGDSQVMLAVKSGKAIRFEEGKTRPM-GRNASGVRGITL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A                                     D +E+  + +   +E N     
Sbjct: 695 AD------------------------------------DNDEVVGMISVDDMESN----- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL VSE G+GKR+S  D+RI+NR GKG++   +++  + G LVA+  V D
Sbjct: 714 ----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVAIKNVTD 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D +++++  G  IR+ V+++R+  RAT+GV + +    + + +V ++
Sbjct: 762 DDDLMIINKSGIAIRLEVSDLRVMGRATQGVRLINLKGKDSIAAVAKV 809


>gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
 gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
          Length = 831

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/891 (43%), Positives = 552/891 (61%), Gaps = 94/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY K A
Sbjct: 9   IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP H +
Sbjct: 129 TQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHRI 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  V +ID+P  +L+ +++ I GPDFPTG +I G+ GIK AY TGRG I IR  +H
Sbjct: 189 DEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIYGKNGIKEAYETGRGRIKIRAKTH 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  IA++RDESDR G RVV+ELK
Sbjct: 249 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIRVVVELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RRT +
Sbjct: 308 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLALFISHRKSVVIRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+++ +N            
Sbjct: 368 ELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEK-FN------------ 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLTGL RD I NE   L  EI+    IL S  
Sbjct: 415 -------------LSEIQAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP+  
Sbjct: 462 LLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  A G
Sbjct: 522 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIG 581

Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N++SL   E+I    T   F ED+S      + F TK+G ++R  LS+F  I   G
Sbjct: 582 KAVVNLISLAPDEKIMATITTKDFNEDKS------IAFFTKNGIIKRTNLSEFKNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +    E   IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 636 VKAINLDGDDELVTAKIIHPEIQQILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                        S + EE                   
Sbjct: 695 PKDYVIGATVV------------------------SSENEE------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 712 ---------ILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  + E
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNV-DDDKVVSIARCPKEE 810


>gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 697

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/697 (50%), Positives = 482/697 (69%), Gaps = 19/697 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI
Sbjct: 426 AGTDAARPEWLEPEYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH
Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 545 GGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNK 661
           +LP+ S  ARGK ++NIL L +GERIT I+    F ED+      ++  AT  G V++  
Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK------FIFMATGDGTVKKTP 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           L+ F  +  +G IA+ L   D ++ V+    EN+I+L
Sbjct: 659 LNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIML 695



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EIT+  +D  +E         EL  +E  ++T+S  G+ K     D+    R GKG  AT
Sbjct: 519 EITAASHDIDME---------ELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSAT 569

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887
            +   + I  L+     N +D I+  S +G   R+ V ++ +ASR  +G   V I    +
Sbjct: 570 KMKDEDHIERLLV---ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEE 626

Query: 888 DERVVSVERIRE 899
            ER+ ++ R+ E
Sbjct: 627 GERITAILRVDE 638


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/883 (42%), Positives = 545/883 (61%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+  +K + K A
Sbjct: 8   VIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I G+VM  +HPHG+ AIYD++ R+AQD+S R  LIEG GNFGS+DGDPPAA RYTE R+
Sbjct: 68  GIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ K+TVDF PNYD   +EPV+L A+ PN+L+NG  GIAVGMATNIP HN+
Sbjct: 128 AKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +IDNP++  D LM++I+GPDFPTGA I+GR GI+ AY TGRGSI IR  + 
Sbjct: 188 GEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIKIRAQAT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R  I+V EIP+QVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIELK
Sbjct: 248 IETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +VILNQLY++T +Q  F + M+AL   +P+   L  +L  ++  +++V+ RRTKY
Sbjct: 308 KDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKDVITRRTKY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH++ GL IA+A+LDEV++IIR S   E A++ L+  ++N            
Sbjct: 368 ELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVT-NFN------------ 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+EVQ  AI+E+RL  LTGL  + +  E   L  +I     +L+   
Sbjct: 415 -------------LTEVQAEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++LGIIK EL  VK +   PRRT I  E   D + ED I  E MVVT+++ GY+KR+ L 
Sbjct: 462 KVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISLD 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGGKG + +  ++EDFV  LF+ STH  +LFF++ G  Y+ KV  +P     A+
Sbjct: 522 TYRSQRRGGKGITAMGTKEEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  L+N+L ++ GE +TT++P    +      Y+  ATK G V++  LS++    R G  
Sbjct: 582 GTPLVNLLYISSGEYVTTVIPI---KDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGIN 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE+++VE      +I+L+T+ G  +RFP   +R   GR + GV+GI+L   D 
Sbjct: 639 AINLDESDELVAVELTHGREEIILSTREGMAIRFPEEDVRPM-GRTARGVKGITLTGDDS 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 V++ D   D                 GD                          
Sbjct: 698 ------VVNMDVVKD----------------GGD-------------------------- 709

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V+  G+GKRT+  ++R   R GKGI     S  N  G +V    V D+D+I+
Sbjct: 710 -----LLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRN--GPVVGALVVKDDDEIM 762

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++S +G +IR+   ++    R T+GV +   A+++ +V+V ++
Sbjct: 763 MISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKV 805



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E ++   +++G  K+T+  ++  S R G  I A ++ + +E   LVAV   +  ++IIL
Sbjct: 608 EEAYLFMATKQGVVKKTNLSEYDTSRRDG--INAINLDESDE---LVAVELTHGREEIIL 662

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + +G  IR P  ++R   R  +GV   +   D+ VV+++ +++
Sbjct: 663 STREGMAIRFPEEDVRPMGRTARGVKGITLTGDDSVVNMDVVKD 706


>gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72]
 gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E]
          Length = 888

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/917 (42%), Positives = 571/917 (62%), Gaps = 62/917 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A
Sbjct: 5   VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++
Sbjct: 65  RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG  H
Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244

Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G RV
Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EVV 
Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +  +
Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424

Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
           +D          +ID     + Y +  + T Y LS  Q  AIL+++L RLTGL +D +  
Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I  
Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F++ 
Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653
           G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  +  DE+S    +V FAT 
Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG           M + L A  D +E             L+  D +EI+
Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATIDEEE-------------LLDEDGDEIS 755

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
              +D +V   +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 756 ---DDFAVSRVVS----LVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/871 (43%), Positives = 542/871 (62%), Gaps = 85/871 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I  ++I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 6   EFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDK 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD++ R  L++G GNFGS+DGD  AA R
Sbjct: 66  PHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDTVDF PN+D + +EPVVL AR PN+L+NG  GIAVGMATN
Sbjct: 126 YTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++DG + +IDNPD     LM  ++GPDFPTG +I+GR GIK+AY TGRG+I 
Sbjct: 186 IPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIMGREGIKSAYKTGRGAIR 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  S  + +I+V E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G +
Sbjct: 246 IRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQ 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL++ A+  V+LNQL+++T LQ  F V M+AL   +P+   L   L  ++  +++V+
Sbjct: 306 IVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQPKVLNLRDALFYYLEHQKDVI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L+KA  RAH+L GL IA+ +LDEV++ IR S   E AR  LM +         
Sbjct: 366 TRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFG------- 418

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL +LTGL R+ +  E  +L   I     
Sbjct: 419 -------------------LSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKA 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L++   +LGIIK+ELL +K++ + PRRT I    ++++ ED I  EDMV+T++HLGY+K
Sbjct: 460 VLANEHMVLGIIKEELLVIKEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIK 519

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR Q+RGG+G + +  ++EDFV  LFI +TH  +LFF++ G VYK KV  +P  
Sbjct: 520 RIALDTYRNQKRGGRGVTAMGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEA 579

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N+L ++  E+IT ++P     S     Y++  T+ G +++  L ++    
Sbjct: 580 GRQAKGTAIVNLLYISGDEKITAVIPV---RSFDTEEYLLTITRKGVIKKTPLVEYGSTR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD  DE++ V+    +N++++ TK G+ +RF    +R   GR + GVRGIS 
Sbjct: 637 KDGIIALSLDENDELIDVKLTNGKNEVIIGTKEGKAIRFAEEEVRSM-GRAARGVRGIS- 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                       +S +  +I  DT E                  
Sbjct: 695 ----------------------------LSEKDEVIGIDTIE------------------ 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +   +L V+EKGFGKR+   D+R   R GKGI     +K N  G LV +  V  
Sbjct: 709 ------QGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRN--GHLVGIKVVKP 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            D+++L++ +G +IR+ V+ I    R+T+GV
Sbjct: 761 GDELMLITAEGIIIRLDVDGISTMGRSTQGV 791



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+++LT++ KG  K+T   ++  + + G  I A  + + +E   L+ V   N  +++I+ 
Sbjct: 612 EEYLLTITRKGVIKKTPLVEYGSTRKDG--IIALSLDENDE---LIDVKLTNGKNEVIIG 666

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + +G  IR    E+R   RA +GV   S ++ + V+ ++ I +
Sbjct: 667 TKEGKAIRFAEEEVRSMGRAARGVRGISLSEKDEVIGIDTIEQ 709


>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 871

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/914 (42%), Positives = 557/914 (60%), Gaps = 56/914 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            SSD  +++ I    + DEM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+
Sbjct: 3   FSSDPAQDR-IILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGL 61

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI G GNFGS+D DPP
Sbjct: 62  TPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPP 121

Query: 126 AAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RYTECRLQ  +   LL D+ ++TVDF  N+DGS QEP+VL AR P +L+NG  GIAV
Sbjct: 122 AAMRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG VA+I NP+I    LM+II GPDFPTG  ILG  GI+ AY TG
Sbjct: 182 GMATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGTAGIREAYTTG 241

Query: 245 RGSIVIRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           RGSI +RGV+ IE  + SG  DRE I++TE+P+Q NKAA++E+IAE V +KR+  I+D+R
Sbjct: 242 RGSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIR 301

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A   V+LN LY+ T +Q+ F  NM+AL G  P+  TL   L  
Sbjct: 302 DESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLTLRQFLSV 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+ ++RRT++ L KA++R H+L GL IA+ NLD V+++IR + +   AR+ELM  
Sbjct: 362 FLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELM-- 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                  DG   LS+ Q  AIL+++L RLT L  + I  E   L
Sbjct: 420 -----------------------DG-FGLSDTQADAILQMQLRRLTALEAEKIEREHQDL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +  DIL+ R R+L II+ E+  +K +  +PRRT I   L D++D D I  +  V+
Sbjct: 456 QERIADLEDILARRERVLEIIETEVTELKTKFASPRRTLIEANLADLDDIDLIANDQAVI 515

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            V+  GYVKR+P+  + AQ R  +GR+G  ++++D V   F    H SVLFFS  G VY 
Sbjct: 516 LVTEQGYVKRMPVDTFNAQSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYC 575

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
            + +++P+ S  ARG  L+ +L + + E+IT+++P   F EDE      Y+V  T  G +
Sbjct: 576 LRAYQIPVSSRTARGVPLVQLLPIPREEKITSVIPVSEFSEDE------YLVMMTAGGFI 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+ F  I  +G IA+ L+  D +  V     E+ I++ ++ G  + F     ++  
Sbjct: 630 KKTALAAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRP 689

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVR + L +GD+ I M I+  A  +                             
Sbjct: 690 LGRATRGVRAMRLREGDEFIGMDILSSAVVETLGNATDADDEETD--------------D 735

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D  VE + +EE  + ++    ++L ++  GFGKR     FR+ NR+GKG+ AT   K+ 
Sbjct: 736 PDVLVEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLK 795

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               L A+  VN  D+++LV+ +G +IR  V +I   SRA  GV +    +D+ + +V  
Sbjct: 796 TPDQLAALRIVNAEDELMLVTSRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVAL 855

Query: 897 IRESEIVDEAESTE 910
           +   ++ DE   TE
Sbjct: 856 VPPEDLSDEEGETE 869


>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
 gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
          Length = 818

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/883 (41%), Positives = 555/883 (62%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+  +K Y K A
Sbjct: 8   VIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I G+VM  +HPHG++AIYDA+ R+AQD++ R  LI+G GNFGS+DGDPPAA RYTE R+
Sbjct: 68  GIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ K+TVDF PNYD   +EP +L ++ PN+LVNG  GIAVGMATNIP HN+
Sbjct: 128 AKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHNM 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +I +P++  D LM++I+GPDFPTGA I+G+ GI+ AY TGRGS+ +R  + 
Sbjct: 188 GEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIMGKDGIRQAYRTGRGSVKMRAQTT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R  I+V EIPYQVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIELK
Sbjct: 248 IETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + ++ +VILN LY++T +Q  F + M+AL   +P+   L  ++  ++  +++V+ RRT+Y
Sbjct: 308 KDSNPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQVIFHYLEHQKDVITRRTRY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH++ GL IA+ANLDEV++ IR S N E ARR L+ + +N            
Sbjct: 368 ELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDK-FN------------ 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AI+E+RL  LT L  + +  E   L  +I     IL+   
Sbjct: 415 -------------LTEIQAEAIVEMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADEQ 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L II+ ELL VK++    RRT I      D + ED I  EDMVVT+++ GY+KR+ + 
Sbjct: 462 KVLNIIRDELLVVKEKFADARRTLISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISMD 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG + +  ++EDFV DLFI STH  +LFF++ G VY+ KV+ +P  S  A+
Sbjct: 522 TYRSQKRGGKGITAMGTKEEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+LS +  E +TT++P  E E +    Y+  ATKHG V++  L+++    R G I
Sbjct: 582 GTPIINLLSFDSDEYVTTVIPIKEFEETA---YLFMATKHGIVKKTALTEYNSSRRDGLI 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD +D++++VE    + +I++ T+ G  +RF    +R   GR + GV+GI+L++   
Sbjct: 639 AINLDEKDKLVAVELTHGKEEIIMCTQEGIAIRFSEEDVRPM-GRVTRGVKGITLSQ--- 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                                     ND  V+ ++ +E      
Sbjct: 695 ------------------------------------------NDHVVKMDVIKEGAS--- 709

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LTV+  G+GKRT   ++RI  R GKGI     +K N  GA+  V  V++ D+++
Sbjct: 710 -----LLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRN--GAVTGVLVVSEEDEVM 762

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++S +G +IR+ V ++    R T+GV +  T +++ +V++ ++
Sbjct: 763 MISAEGIIIRINVKDVSSMGRNTQGVTLMRTGENDHIVAIAKV 805



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L  +E  ++T++ +G+ KR S   +R   R GKGI A    + + +  L   F  + 
Sbjct: 496 IEDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMGTKEEDFVRDL---FIAST 552

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESE 901
           +  ++  ++KG + R+ V E+  ASR  KG  I    S   DE V +V  I+E E
Sbjct: 553 HHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYVTTVIPIKEFE 607


>gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria
           bacterium BBFL7]
 gi|89516338|gb|EAS18999.1| DNA  gyrase (type IIA topoisomerase),  subunit A [Flavobacteria
           bacterium BBFL7]
          Length = 840

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 553/886 (62%), Gaps = 85/886 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y K ARI 
Sbjct: 10  INIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGYKKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGDPPAA RYTE R++K 
Sbjct: 70  GEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYTEARMRKI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  +L D+ K+TVD + N+D +  EP V+  R PN+LVNG  GIAVGMATN+P HNL EV
Sbjct: 130 SEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMPPHNLTEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG VA IDN DI++D L+  ++ PDFPTG +I G  G+K+A  TGRG + IRG   +E+
Sbjct: 190 IDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIYGYDGVKDAMHTGRGRVKIRGRVRLEE 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G RE I+V E+PYQVNKA M++K A+L+ EK++  I+ +RDESDR G R+V  LKR A
Sbjct: 250 VKG-RECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIVYILKRDA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++++N+LY++T+LQS FSVN +AL   +P+   +  ++  FV  R +VVVRRT++ L 
Sbjct: 309 IPNIVINKLYKHTALQSSFSVNNIALVKGRPQLLNVKEMIHYFVEHRHDVVVRRTEFELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +RAH+L GL IA  N+DEV+ +IR S N E AR +L++R                  
Sbjct: 369 KAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q RAI+E+RL +LTGL +D +RNE N L   I +  DIL+ + R +
Sbjct: 411 --------FELSEIQARAIVEMRLRQLTGLEQDKLRNEYNDLIATITDLKDILARKERRM 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK+EL+ +K++    RR++I     D+  ED I  E +V+T+SH GY+KR P++ Y+ 
Sbjct: 463 DIIKEELIEIKEKYGDERRSQIEYAGGDLSIEDMIADEQVVITISHAGYIKRTPITEYKT 522

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG G+     RDEDF+ D+F+ + H  +LFF+  G  +  +V+ +P GS  ++G+A+
Sbjct: 523 QNRGGVGQKASTTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSRTSKGRAI 582

Query: 619 INILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            N++++ Q + +  ++   +  DE   N+ YV+  TK G V++  L  + +   +G  A+
Sbjct: 583 QNLINIEQDDNVKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPRTNGINAI 642

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQV 735
            +   D +L  +  T ++ ++L  K G+ +RF  +  R   GRN+ GVRGI LA   D+V
Sbjct: 643 TIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRAM-GRNASGVRGIRLADDNDEV 701

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M  V   D++                                                
Sbjct: 702 IGMVAVNDMDSN------------------------------------------------ 713

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               IL VSEKG+GKR+S  D+R +NR GKG++   V++  + G LVA+  V D+D +++
Sbjct: 714 ----ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTE--KTGGLVALKNVTDDDGLMI 767

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++  G  IR+ V  +R+  RAT+GV + +   ++ + +V ++ + E
Sbjct: 768 INKSGVAIRIDVKNLRVMGRATQGVRLINLKGNDSIAAVAKVAQEE 813


>gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152]
 gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152]
          Length = 838

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/889 (41%), Positives = 555/889 (62%), Gaps = 85/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++    Y
Sbjct: 3   EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQDWS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD   N+D + QEPVVL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G VA I+N DI++D LM+ +  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+  G RE I+VTEIPYQVNKA M++K A+LV EK+I  IA++RDESDR G R+V
Sbjct: 243 AKAVIEEVKG-RECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA  RAH+L GL IA  N+DEV++IIR S N + AR  L++R           
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E + + + I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK ELL +K++    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYQIIKDELLHIKEKYGDERRSTIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLDEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++ Q + +   +   +  +E   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L    G+ +RF  +  R   GR + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D+VI M  V                                   ND          
Sbjct: 695 QHENDEVIGMVAV-----------------------------------NDM--------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  IL VSEKG+GKR+S  D+RI+NR GKG++  ++S+  + G LVA+  V+
Sbjct: 711 --------ESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D++ +++++  G +IR+ V ++R+  RAT+GV + +   D+ + +V ++
Sbjct: 761 DSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINIKDDDSIAAVAKV 809


>gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
 gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
          Length = 822

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKDELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    D  S ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSESSDDAYLFFTTRHGVVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  SE
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAASE 808



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQGEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   +SE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVDSESSDDA 609


>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 815

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/882 (42%), Positives = 547/882 (62%), Gaps = 85/882 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   K Y 
Sbjct: 7   EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 247 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L  +++ +E V+ RR
Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 414 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 461 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P     
Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E +    + ++   T+ G V++  L++F  I +SG
Sbjct: 581 AKGTAIVNLLAVEADERITAVIQVREFKP---DRFLFLGTRKGVVKKTPLAEFANIRKSG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+LG+ + FP   +R   GR + GVRGI+L+ G
Sbjct: 638 LRAVNLDEDDELIGVKFTDGENRIMLGTRLGKAITFPEDGVRSM-GRIARGVRGITLSDG 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I                                  LK+ S V           
Sbjct: 697 DEVVAMDI----------------------------------LKSGSEV----------- 711

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V  + +
Sbjct: 712 --------LTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRGSQE 761

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L++ +G +IR  V+EI + SR T+GV + + A+++RV S+
Sbjct: 762 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASM 803


>gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
 gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
          Length = 881

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/890 (42%), Positives = 545/890 (61%), Gaps = 83/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 SKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNP+IDL+ LM  I+ PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE      ++IV+TEIPY VNKA ++E IAELV++ +I  I++  DES RQG R+VI++K
Sbjct: 252 IESDES-HDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDESGRQGMRIVIDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTKY
Sbjct: 311 RDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R               
Sbjct: 371 DLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  D +  E   L   I     IL+   
Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++   PRRT I     +   ED    + +V+TVSH+GY+KR PLS 
Sbjct: 465 LCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   +++   +     +DE   N+ YVVFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ +   DE++ V      N++++  + G+ VRF  S IR   GR S GVRG+ L +GD
Sbjct: 645 IAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRLDEGD 703

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +   IV+                                  NDS  E           
Sbjct: 704 DAVVGMIVV----------------------------------NDSETEN---------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE G+GKR+   D+RI+NR GKG++   V++  + G LVA+  V D++ +
Sbjct: 720 ------VMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTE--KTGRLVAIKNVTDDNDL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           ++++  G +IR+ V + R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 772 MIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821


>gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
 gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
          Length = 960

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/703 (50%), Positives = 485/703 (68%), Gaps = 13/703 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GIT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++ C+A+I NPD+ L+ +ME I GPDFPT  +I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGIINGKAGIEQAYRTGRGKVHIRARA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE     RE IVV E+PYQVNKA ++E+IAE V++K+I  I+ LRDESD+ G R+V+E+
Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q +F +NMVAL   +P+ FTL  +L AF+  R EVV RRT 
Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVALIDKQPKIFTLKEMLDAFLRHRREVVTRRTV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LAIA+AN+DE++ +I+ S     A++ L+ R W   D+  +++  
Sbjct: 367 FELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLERA 426

Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D         + Y I  +G+ +L+E+Q +AIL+LRL +LTGL  + I +E   L   I 
Sbjct: 427 GDDAARPEWLEAEYGI-REGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL++ SRLL +I +EL + KD     RRT I     D+  ED I RED+VVT+SH 
Sbjct: 486 ELLYILNTPSRLLEVITEELQASKDAFGDERRTEISASSADINLEDLIEREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH  +L FSS G +Y  KV++
Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGRLYWMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARGK ++N+L L  GERIT I+P  + E   ++ +V  AT +G V++  LS +
Sbjct: 606 LPLASRQARGKPIVNLLPLQDGERITAILPVAQFE---DDKFVFMATANGTVKKTALSAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +    G IA+ L+  DE++ V+     NDI+L +  G+ VRF
Sbjct: 663 SKPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRF 705



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 55/184 (29%)

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRGI L +G +V+S+ +                                   KN
Sbjct: 784 GRTATGVRGIKLEEGQKVVSLIVP----------------------------------KN 809

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D +                   ILT +E GFGKRT+  ++   +R  KG+ +  VS+ N 
Sbjct: 810 DGA-------------------ILTATENGFGKRTALEEYPAKSRGTKGVVSIKVSERN- 849

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V D D+++L+++ GTL+R   +E+ +  R T+GV +  T +DE VV ++RI
Sbjct: 850 -GKVVGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDELVVGLQRI 908

Query: 898 RESE 901
            E E
Sbjct: 909 DEVE 912


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/883 (43%), Positives = 543/883 (61%), Gaps = 85/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V + +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  +K Y K A
Sbjct: 17  IMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKPYKKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G V+ +YHPHG+AA+Y+ + R+AQD++ R  LI+G GNFGSVDGD PAA RYTE RL
Sbjct: 77  VVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF  NYDGS +EPVVL AR P +LVNG  GIAVGMATNIP HNL
Sbjct: 137 SKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V +ID PD DL  + +II+GPDFPT  +I+GR GI+NAY TGRGSI +R  + 
Sbjct: 197 GEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLIIGREGIRNAYRTGRGSIKVRAKAQ 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E  S  + QIVVTEIPYQVNKA +++ I +LVREK+I  I DLRDESDR G R+VIEL+
Sbjct: 257 VETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRIVIELR 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R     VILNQLY++T +Q  F V M+AL   +P    L  +L  ++  ++EV+ RRT+Y
Sbjct: 317 RDVQPKVILNQLYKHTQMQENFGVIMLALVDGRPRVLNLREMLTLYLDHQKEVITRRTRY 376

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL +A  RAH++ GL IA+  LDEV+RIIR +PN   A R LM+R               
Sbjct: 377 LLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMER--------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AI+++RL RLT L R+ +  E   L   I    ++L+S +
Sbjct: 422 -----------FQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEA 470

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  I++ ELL +K +   PRRT+IV    ++E ED I RED+VVT++H GY+KR P+  
Sbjct: 471 RVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKRQPVDT 530

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGG+G   +  R+ED V D+F+ +TH  +LFF++ G V++ +   +P    QARG
Sbjct: 531 YRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARG 590

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             L+N+L LN+GE IT ++P  E E    + Y++ AT+ G V++  L ++    R G +A
Sbjct: 591 TPLVNLLYLNKGETITAVIPIRELE---EDSYLLMATRKGIVKKTSLGEYHTSRRDGLLA 647

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D+++ V      N+++L T+ G+ +RF    +R   GR + GVRGI+L   D V
Sbjct: 648 INLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPM-GRAARGVRGIALDDDDMV 706

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + + + +  DA+                                                
Sbjct: 707 VGL-VKVREDAE------------------------------------------------ 717

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               ++ VSE+GFGKRT+  ++R   R GKGI   +V+  +  G + AV  V   D+++L
Sbjct: 718 ----LVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVT--DRTGPVAAVAVVKLEDELML 771

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +S +G LIR+ V +I    R T+GV +      +RVV++ RI+
Sbjct: 772 ISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDRVVAMARIQ 814



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           ++ ++L  + KG  K+TS  ++  S R G  + A +   ++E   LV V     N++++L
Sbjct: 616 EDSYLLMATRKGIVKKTSLGEYHTSRRDG--LLAIN---LDEDDDLVGVLRTEGNNEVML 670

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V+ +G  IR   +E+R   RA +GV   +   D+ VV + ++RE
Sbjct: 671 VTRRGKAIRFGEDEVRPMGRAARGVRGIALDDDDMVVGLVKVRE 714



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  ++T++ +G+ KR     +R   R G+GI+A       E   +  +F    +  ++ 
Sbjct: 510 REDIVVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMGT---REEDIVRDIFVTTTHHYLLF 566

Query: 856 VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +++G + R+  +EI  A R  +G   V +    K E + +V  IRE E
Sbjct: 567 FTNQGRVFRLRGHEIPEAGRQARGTPLVNLLYLNKGETITAVIPIRELE 615


>gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
 gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
          Length = 864

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 544/891 (61%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTNDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNP ID D LME I+ PDFPTGA I G  G+++AY TGRG IVIR  + 
Sbjct: 192 NEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIYGLQGVRDAYETGRGRIVIRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    + ++IV+TEIPY VNK  ++E IA+LV+E ++  I++  DES RQG R+VI++K
Sbjct: 252 IE-VGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIVIDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R EV +RRT++
Sbjct: 311 REANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLALKDCVKYFVEHRHEVTIRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A++ L  R               
Sbjct: 371 ELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  D +  E   L   I     IL    
Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAHLQQILEDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 465 LCKKVMKDELNEVKEKYGDDRRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G+  A+G
Sbjct: 525 FREQARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDAKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   + +  I+     +DE   N+ YVVFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ + + DE++ V      N++++  + G+ VRF    IR   GR + GVRGI L KG 
Sbjct: 645 IAINIANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTM-GRTATGVRGIRLDKGD 703

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQV+ M +V                                   NDS             
Sbjct: 704 DQVVGMIVV-----------------------------------NDSV------------ 716

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               ++ ++ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V D++ 
Sbjct: 717 ----QETVMVVSENGYGKRSGVEDYRKTNRGGKGVKTMNIT--DKTGRLVAIKNVTDDND 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           +++++  G  IR+ V + R+  RAT+GV + + +K   V+ SV +   SE+
Sbjct: 771 LMIINKSGITIRLAVADCRVMGRATQGVRLINLSKKNDVIASVCKTMSSEL 821


>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
 gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
          Length = 824

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/882 (42%), Positives = 548/882 (62%), Gaps = 85/882 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   K Y 
Sbjct: 16  EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYDGS +EP+VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L  +++ +E V+ RR
Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 376 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 423 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 469

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 470 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 529

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P     
Sbjct: 530 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 589

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E +    + ++   T+ G V++  L++F  I +SG
Sbjct: 590 AKGTAIVNLLAVEADERITAVIQVREFKP---DRFLFLGTRKGVVKKTPLAEFANIRKSG 646

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R   GR + GVRGI+L+ G
Sbjct: 647 LRAVNLDEDDELIGVKFTDGENRIMLGTRHGKAITFPEDGVRSM-GRIARGVRGITLSDG 705

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I                                  LK+ S V           
Sbjct: 706 DEVVAMDI----------------------------------LKSGSEV----------- 720

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   LTV+E G+GKRT++ ++R   R GKG+    V++  + G++V +  V  + +
Sbjct: 721 --------LTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGSVVGIRVVRGSQE 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L++ +G +IR  V+EI + SR T+GV + + A+++RV S+
Sbjct: 771 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASM 812


>gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
 gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
          Length = 814

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 547/891 (61%), Gaps = 90/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ K+TVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID     N +  ++ +++II+GPDFPTGA+ILG  GI+ AY TGRG I +
Sbjct: 189 HEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S+R+G R+
Sbjct: 249 RAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+VILNQLY++T LQ  F V M+AL   +P+   ++ +L  ++  +EEVV 
Sbjct: 309 CIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLNYYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+  L++           
Sbjct: 369 RRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIE----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ +AI+++RL  LTGL R+ +  E   L   I E   I
Sbjct: 418 ---------------AFELTEVQAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L +  +    RRT I     D+  ED I R+D+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEILIIDGKYSDERRTSIGFDEFDISMEDLIPRQDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   DED+V +LF+ STH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MTVDTFKSQNRGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKGYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT ++P  E +      Y+  ATK G V++  ++D+  + +
Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIDEYKEGQ---YLFMATKKGLVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+   Q+ DI+L TK GQC+RF    +R   GR S+GVRG++LA
Sbjct: 640 TGLAAITLREEDELIEVKFTDQDQDIILVTKYGQCIRFNEKDVRA-TGRTSMGVRGMNLA 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+ M   LH    +                                          
Sbjct: 699 DRDEVVGMQ--LHTQGTH------------------------------------------ 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRT+  +F   NR GKG++   +++  + G +V V  VN++
Sbjct: 715 ---------LLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITE--KTGNVVGVKAVNED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++I++++ +G +IR+  N I +  R T GV + +   +  V S+ ++RE+E
Sbjct: 764 NEIMIINTEGIVIRMECNSISVLGRITSGVKLINLNDNATVASIAKVRETE 814


>gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
 gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
          Length = 878

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/890 (41%), Positives = 547/890 (61%), Gaps = 83/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM Q+W++R  LI+GQGNFGSVDGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL K+TVD   N+D + QEP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 SKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNPDID D LM+ I  PDFPTGA I G  G+K+AY TGRG IV+R  + 
Sbjct: 192 GEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIYGIQGVKDAYETGRGRIVVRATAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +S + ++IV+TEIPY VNK  ++  IA+L +E R+  IA++ DES RQG R+V+++K
Sbjct: 252 IE-SSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDESGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRT++
Sbjct: 311 RDANANVLLNKLFKLTALQSSFSVNCIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R               
Sbjct: 371 ELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  + + NE N L   I     IL+   
Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQILNDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++    RRT I     +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 465 LCKKVMKDELNEVKEKYGDARRTMIKPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FREQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   +++   +      D    NN YVVFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVKKTCLEAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR S GVRG+ L +GD
Sbjct: 645 IAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTM-GRTSTGVRGMRLDEGD 703

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +   IV++                        D E+ T                    
Sbjct: 704 DAVVGMIVVN------------------------DPEKET-------------------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE+G+GKR+   D+R++ R GKG++  +++  ++ G LVA+  V D++ +
Sbjct: 720 ------VMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNIT--DKTGRLVAIKNVTDDNDL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           ++++  G +IR+ V + R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 772 MIINQSGIVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/894 (42%), Positives = 549/894 (61%), Gaps = 87/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y K A
Sbjct: 7   IVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE ++
Sbjct: 67  RIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAKM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 127 TKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +++R  + 
Sbjct: 187 TEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIVGKSGIRKAYETGRGKVILRSKAE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G R +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+VIELK
Sbjct: 247 IEEEKG-RSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIVIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LNQLY++T +Q  F + M+AL   +P+  +L  +LK ++ F+EEV+ RRT++
Sbjct: 306 RDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLKHYIKFQEEVITRRTQF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  LM R               
Sbjct: 366 DLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFG------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q  AIL+++L RLTGL R+ I  E   L   IK    ILS +S
Sbjct: 413 -------------LSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKS 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            LL IIK EL  +K +    RR+ I++G   D++ ED I  +D+V+T++H GY+KR+P+ 
Sbjct: 460 LLLKIIKDELNEIKVKYGDERRSEIIQGEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVE 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQ+RGG+G   +  +++DFV  +   STH ++LFF++LG VY+ K +++P     A+
Sbjct: 520 TYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAK 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  LIN++ L++ E+I  ++   E +      +++  TK G +++  L  +  I ++G  
Sbjct: 580 GMNLINLIPLDKEEKIQNVIYLKEFKKDK---FLIMGTKKGLIKKTSLDKYASIRKNGLN 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++S    T + +I+  TK G  +RF  + +R   GR + GV+ I+L + D+
Sbjct: 637 AINLREDDELVSARVTTGDCNIIYATKNGYAIRFHENDVRPM-GRTATGVKAITLREDDE 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM +                                             SE R     
Sbjct: 696 VVSMEVA--------------------------------------------SENRD---- 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L VSE G+GKRT    + +  R GKG+    +S+  + G L+    V D D+++
Sbjct: 708 -----FLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISE--KTGLLIGARSVEDQDELM 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           L++D G  IR+ V++I   SR   GV +  T  +E+VV++ ++  SE  D+  +
Sbjct: 761 LINDSGIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISENEDDCNN 814


>gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 870

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/738 (50%), Positives = 505/738 (68%), Gaps = 15/738 (2%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK 
Sbjct: 3   EFAKEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YDA+ RMAQ +S+R +L +GQGNFGS+DGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL D+ K+TVDF  NYDGS  EP VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++ CVA+ID+P+I ++ LME + GPDFPT  +I G  G++ AY TGRG ++I
Sbjct: 183 PPHNLREVINACVALIDDPEISIEGLMEHVPGPDFPTAGIINGVEGVREAYRTGRGRVLI 242

Query: 251 RGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E    G RE IVVTE+PYQVNKA + EKIAELV+EKRI  I++LRDESD+ G R
Sbjct: 243 RARSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG  A+V+LN LY +T +Q++F +N+VAL   +P+   L  +L++F+  R EVV
Sbjct: 303 LVIELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVDGQPKVLDLRQVLESFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR +PNP  A+  L+ RSW    + D
Sbjct: 363 TRRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSD 422

Query: 430 LIDLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++D    S+         Y +G DG   LSE Q +AIL+LRL RLTGL +D I +E   L
Sbjct: 423 MLDRAGASASRPEDLAADYGVGDDG-YRLSEAQAQAILDLRLHRLTGLEQDKILDEYREL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++ LDIL S  RL   I+ ELL+V ++    RR+ I E   ++  ED I  ED+VV
Sbjct: 482 LDLIEDLLDILGSGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  P++ YRAQRRGG+G++    ++EDFV  L + +TH +VL FSS G VY 
Sbjct: 542 TLSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP GS  +RGK ++N+L L   ERI  I+P  E +      YV   T  G V++ 
Sbjct: 602 LKVYELPQGSRASRGKPIVNLLPLEADERINAILPVREYDPDH---YVFMVTARGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+DF +   +G IA+ L   D ++ V     + D++L T  G+ VRF  + +R   GR 
Sbjct: 659 PLTDFSRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPM-GRT 717

Query: 721 SVGVRGISLAKGDQVISM 738
           + GVRG+ +    +VI++
Sbjct: 718 ACGVRGVRMESDHRVIAL 735


>gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
 gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
          Length = 845

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/902 (41%), Positives = 554/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD   N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A I+N DI++D LM+ I  PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIYGYDGVREAFKTGRGRVVLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+  G RE I+V+EIPYQVNKA M++K A+LV EK+I  IA +RDESDR+G R+V
Sbjct: 243 AKAIIEEVKG-RECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN L++YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGRPEMLNLKDMIHHFVDHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DRAH+L GL IA  N+DEV+ +IR S N E AR++L+ R           
Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +R E   L   I++  DIL
Sbjct: 411 ---------------FELTEIQARAIVEMRLRQLTGLEQDKLREEYEELLKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL  ++ +    RRT I     D+   D I  E +V+T+SH GYVKR 
Sbjct: 456 ARKERRMDIIKEELEEIRAKYGDERRTDIDIAGGDVSITDLIPDEKVVLTISHAGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG G+ G   R+EDF+  LF+ + H  ++FF+  G  +  +V+ +P GS 
Sbjct: 516 SLMEYKTQNRGGVGQKGSTTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEPDDKVKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L+ +  T ++ ++L  K G+ +RF     R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLAAKLTTGDSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V                                   ND          
Sbjct: 695 ADDNDEVIGMVAV-----------------------------------NDP--------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L VSE G+GKR+   D+R++NR GKG++   V++  + G LVA+  V 
Sbjct: 711 --------ESNVLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTE--KTGNLVAINNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D D +++++  G  IR+ V+E+R+  RAT+GV + +  K + + +V ++++ E   E + 
Sbjct: 761 DEDDLMIINKSGIAIRMEVSELRVMGRATQGVRLINLKKGDTIAAVTKVKKDEDDIEGDD 820

Query: 909 TE 910
           TE
Sbjct: 821 TE 822


>gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius]
          Length = 858

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/887 (43%), Positives = 546/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + V     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSKAAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG++++YDAL RMAQ +S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKEAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E N L I I E   IL
Sbjct: 414 ---------------FNLSHIQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  IIK+EL  +K++   PRRT I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIKEELTEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P  + DES      + F T++G V+R  LS+F  I  
Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS----LAFFTRNGVVKRTSLSEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +  T     L+  T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDADEIVTAKIATPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 I    V+ AD                                   V  NI    
Sbjct: 694 K-----IDTDFVVDAD-----------------------------------VINNI---- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  EQ ILTV +KG GKRT+  ++R++NR+G G+ A  +S   + G +V    V+D
Sbjct: 710 -------EQEILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV +  IR A R T GV+I +  KD++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAK 807


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/877 (43%), Positives = 550/877 (62%), Gaps = 88/877 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI G
Sbjct: 11  NIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKKSARIVG 70

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+ KYHPHG++++YDA+ RMAQD+S R  L++G GNFGS+DGD  AA RYTE R+ K A
Sbjct: 71  DVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEARMSKLA 130

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++ D+ K+T+DF+PN+DG   EPVVL AR+P++LVNG  GIAVGMATNIP HNL EV+
Sbjct: 131 MEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPHNLTEVI 190

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           + C+A ++NP+ID+  LME I+GPD PTGA+ILG  GI+NAY TG GSI++R    I + 
Sbjct: 191 NACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTKGIRNAYETGNGSIMMRSKCEIIEG 250

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
            G +  I+VTEIPYQVN+  ++EKIAELV+EKR+  I DLR+ES+R+G R+VIEL++  +
Sbjct: 251 HGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVIELRKDVN 310

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQ  + +NM+AL   +P+   L  I+ A++  + EV+VRRT++ LNK
Sbjct: 311 PQVMLNNLFKLTQLQVSYGINMLALQDGQPKVLNLKEIIAAYIKHQVEVIVRRTQFDLNK 370

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A DRAH+L G  IA+ ++D ++ IIR S N E A                L +LI + S+
Sbjct: 371 AEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEA----------------LNNLISEFSF 414

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                     SE Q +AILE+RL RLTGL RD I +E  +L   I +  DIL++  R+ G
Sbjct: 415 ----------SERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHG 464

Query: 500 IIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           II+ EL  V  +    RRT IV G   D+EDED I  E +++T+++ GY+KR P+S YR+
Sbjct: 465 IIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQPISTYRS 524

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG+G  G+   D+D+V +L   STH  +LFF++ G VY++K + +P     A+G  +
Sbjct: 525 QNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRTAKGLPI 584

Query: 619 INILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +NI+ + Q E I+ I+P  E    +N N ++ FAT+ G V+R  LS F  I  +G IA+ 
Sbjct: 585 VNIIEIAQDEEISAIIPVKE----FNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIALS 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V   T  NDI++ +  G+ V F    +R   GR + GVRGI+L +G+  + 
Sbjct: 641 LREDDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSM-GRTAAGVRGINLEEGEVAVG 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M IV                           TE+                          
Sbjct: 700 MEIV---------------------------TED-------------------------- 706

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q IL VSEKGFGKRT   ++R ++R GKG++  +++  N  G+LVA+  V   + +++V+
Sbjct: 707 QEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKN--GSLVAMKTVTGEEDLLIVT 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +KG +IR P+++I    RAT+GV +     D+ V SV
Sbjct: 765 NKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSV 801


>gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
 gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
          Length = 822

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/891 (41%), Positives = 557/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE VD    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIYKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPDRVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+ G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVDSERS--DDAYLFFTTRAGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TKLG  VRF  S +R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V+  N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKN--GPLAGLLTVTGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++DKG +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDKGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808


>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
 gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
          Length = 833

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/889 (43%), Positives = 544/889 (61%), Gaps = 92/889 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SY+ YA++VI+GRAIPD+RDGLKPVHRR+LF M +MG  WNK Y K ARI 
Sbjct: 12  VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+++GKYHPHG+AA YD + R+AQD+S+R  LI+GQGNFGS+D DPPAA RYTE R+ + 
Sbjct: 72  GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              +L DL KDTVDF PNYD S  EP +L +R P +L+NG  GIAVG+ATNIP HN+ EV
Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           + G +A+I NP++ L+ +M+ I GPDFPT   I GR GI +AY TGRG I +R    IEK
Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFINGREGIISAYRTGRGIIRLRAKVVIEK 251

Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               DRE IVVTEIPYQVNKAA++EKI+ELV+EK+I  I+DLRDESDR+G R+VI+LKR 
Sbjct: 252 NERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +++VILNQLY++T ++S F + M+A+   +P  F LI ILK+F+ FR+ V+VRRT + +
Sbjct: 312 ENSNVILNQLYKHTQMESTFGIIMLAIENGQPHVFNLIEILKSFIEFRKVVIVRRTTFEV 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKAR+RAH+L GL IA+ N+DEVV +I+ S +P+ A   L  R                 
Sbjct: 372 NKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSR----------------- 414

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+++Q RAIL++RL RLTGL +  I+ E ++L  EI+    IL    ++
Sbjct: 415 ---------FSLTDIQARAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKV 465

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L +I  E+  + D     RRT IV    D++ ED I  E+MVVT S  GY+KR P S+YR
Sbjct: 466 LEVIISEMEEIIDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYR 525

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGG+G+ G++ ++ED V  LFI STH  VL F++ G +Y  KV+++P     A+GK 
Sbjct: 526 TQRRGGRGKVGMMTKEEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKP 585

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N++++   ER+  ++P     S      V+ AT+ G V++  L+ +      G IA+ 
Sbjct: 586 IVNLINIGPDERVAAVLPV---RSFEEGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALS 642

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           +D  DE++ V+    + D+ L T+ G+ +RF    IR   GR + GVRGIS+   D VI 
Sbjct: 643 IDEGDELVDVKLTGGDQDVFLATRKGKAIRFKEDDIRTM-GRTARGVRGISMDSDDAVIG 701

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I    +A                                      +SE+ C       
Sbjct: 702 MDIPREGNAIV-----------------------------------TVSEKGC------- 719

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPVNDNDQIILV 856
                      GKRT+  ++R+  R GKG+      +I   G LVA +  V   + ++L+
Sbjct: 720 -----------GKRTAVSEYRLQKRGGKGMINL---RIVPKGGLVADILQVTGEEDLLLM 765

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVER-IRESE 901
           S+ G +IR+ V ++ +  R T+GV +     +E++V   S ER +RE E
Sbjct: 766 SNSGKIIRMKVEDVPLIHRVTQGVKLIELDAEEQLVGMTSAEREVREEE 814


>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
          Length = 805

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/875 (42%), Positives = 545/875 (62%), Gaps = 88/875 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GK
Sbjct: 1   MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+++ RMAQ+++ R +L++G GNFGSVDGD  AA RYTE R+ K +  L+ 
Sbjct: 61  YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDT+D++ NYDG  +EP VL AR+PN+LVNG  GIAVGMATNIP H LGE++DG +A
Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  N DI +  LME I GPDFPT  +I+GR+GI+ AY TG+GSI++R    IE+ S  +E
Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIVGRSGIRRAYETGKGSIMMRAKVEIEQKSNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+V+L
Sbjct: 241 TIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT+Y L KA  RA
Sbjct: 301 NNLYKQTALQTSFGINMLALVDGQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S   + A+  LM +                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQ------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q +AIL++RL RLTGL R+ I  E  +L   I E   IL+   ++L II++E
Sbjct: 397 --FNLSEKQAQAILDMRLQRLTGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREE 454

Query: 505 LLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           LL +KD  +  RRT IV  G+ ++EDED I RE++V+T++H GY+KR+P S YR+Q+RGG
Sbjct: 455 LLEIKDRFNDVRRTEIVAGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+   D+DFV  L   STH ++LFF++ G  Y+ K + +P  +  A+G  +IN+L 
Sbjct: 515 RGVQGMGTNDDDFVEHLLYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLG 574

Query: 624 LNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           + + E I T++   E DE S    Y+ F T+ G  +R  +SDF  I  +G IA+ L   D
Sbjct: 575 IEKDEWINTMIRIEEFDEES----YLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDD 630

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++SV+    +  IL+ TK G  +RF    +R   GR + GV+GI+L   D+V+SM I+ 
Sbjct: 631 ELISVKLTDGDKQILIGTKNGLLIRFDEKDVRSM-GRTATGVKGITLVNDDEVVSMEIIE 689

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
             D                                                      +L 
Sbjct: 690 EDD-----------------------------------------------------HVLV 696

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +++ GFGKRT + ++R+ +R GKG++  +++  N  G LVAV  V   + ++L++  G L
Sbjct: 697 ITKHGFGKRTPASEYRLQSRGGKGLKTCNITDKN--GPLVAVKSVTGEEDLMLITVHGVL 754

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IR+ ++ I I  R T+GV + S  ++E V +  ++
Sbjct: 755 IRMDIHAISITGRNTQGVKLISLREEEYVATAAKV 789


>gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334]
 gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/901 (41%), Positives = 561/901 (62%), Gaps = 86/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  S +R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMS-RGATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G+L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GSLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAEST 909
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  E E V     T
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAEKEEVGTENET 817

Query: 910 E 910
           E
Sbjct: 818 E 818


>gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
 gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
          Length = 822

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 559/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609


>gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
 gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
          Length = 855

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 563/905 (62%), Gaps = 87/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE
Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821

Query: 906 AESTE 910
             +T+
Sbjct: 822 NSNTD 826


>gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/897 (41%), Positives = 565/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++                           +IS D E                    
Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901]
 gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901]
          Length = 856

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/914 (43%), Positives = 552/914 (60%), Gaps = 81/914 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK +H LL DL K+TVDF PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+ +I+NP   +D L+E I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGIINGRAGILMAYRTGRGRIYVRAK 245

Query: 254 SHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           + +   EKT  +R+ I++ EIPYQVNKA ++EKIAELV++K+I  I+++RDESD+ G RV
Sbjct: 246 AEVVTDEKT--NRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KRG   DV+LN LY  T LQS+F +N+VAL   +P+   L  +L+ F++ R EVV 
Sbjct: 304 VIEIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDDQPKVLNLKQMLEHFISHRREVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YLL KAR+R HVL GLA+A+AN+DEV+ +I+ S  P  AR  L+ R W  + I   
Sbjct: 364 RRTVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTISQF 423

Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         DD     G  DG  +LS  Q +AILELRL RLTG+  D +  E      
Sbjct: 424 LERAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEKLQ 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L+ILS+  RL+ +I++EL +V  E    RRT I     D+  ED I  ED VVT+
Sbjct: 484 QISEYLEILSNAVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTVEDLINEEDRVVTI 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL  Y+AQRRGG G++   ++DEDFV  L I +TH  +L F++ G V+  K
Sbjct: 544 SHGGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCFTNAGKVFWLK 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
           V+++P+   Q+RG+ ++N+L L +GERIT+I+P   F ED       ++V AT  G V++
Sbjct: 604 VYQIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDEDR------FIVMATSQGTVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS F +    G  A+ L   D ++       + DI+L +  G+  RF    +R   GR
Sbjct: 658 TPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRSM-GR 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S GVRGI +A   +VI+M I     AD  + +   ++   +R     D ++  +     
Sbjct: 717 TSRGVRGIRMADEHRVIAMVI----PADGGKVLTVSENGYGKRT----DVDDFPT----- 763

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                                     KG G +      ++S R+G  + A  +   +E+ 
Sbjct: 764 --------------------------KGRGSQ-GVIAMQVSERNGGLVGAVQIFDGDELM 796

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +        +DQ  LV  +G       +E+ + SR T+GV +    + E +V V RI E
Sbjct: 797 MI--------SDQGTLVRTRG-------DEVSLLSRNTQGVRLIKVRESEHIVGVARIAE 841

Query: 900 ---SEIVDEAESTE 910
               +  DE ES E
Sbjct: 842 QLDQDADDETESNE 855


>gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 835

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/890 (41%), Positives = 545/890 (61%), Gaps = 90/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID     N +  ++ +++I++GPDFPTGA+ILG  GI+ AY TGRG I +
Sbjct: 189 REVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S+R+G R+
Sbjct: 249 RAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+V+LNQLY++T LQ  F V M+AL   +P+   ++ +L  ++  +EEVV 
Sbjct: 309 CIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLRHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+  L++           
Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++VQ +AI+++RL  LTGL R+ + NE   L   I E   I
Sbjct: 418 ---------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L +  +    RRT I    LD+  ED I  +D+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   +ED+V +LF+ STH  ++FF++ G VY+ K + +P   
Sbjct: 523 MTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT ++P  E E      Y+  ATK G V++  ++D+  + +
Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIREYEDGK---YLFMATKKGLVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    E DI++ TK GQC+RF    +R   GR S+GVRG++L+
Sbjct: 640 TGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS-TGRTSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M   LH   DY                                          
Sbjct: 699 DRDEVIGMQ--LHTQGDY------------------------------------------ 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L  SEKG GKRT+  +F   NR GKG++   +++  + G ++ V  VN++
Sbjct: 715 ---------LLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE--KTGNVIGVKAVNED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++I++++ +G +IR+    I I  R   GV + +   + +V S+ ++RE+
Sbjct: 764 NEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAKVRET 813


>gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 826

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/888 (42%), Positives = 550/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    +  V I  EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 11  EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 70

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD  AA R
Sbjct: 71  PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 130

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ K+T+D+ PNYDG  QEPVVL AR+PN++VNG  GIAVGMATN
Sbjct: 131 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 190

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+NPD+    LM  I+GPDFPTGA ILGR GI+ AY+TGRGS+ 
Sbjct: 191 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 251 MRAKTTIEEVN-NKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 309

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T+LQS F +  +AL   +P+   L  +L  ++  +  V+
Sbjct: 310 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 370 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L  +I E   
Sbjct: 421 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 463

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II +EL  ++      RRT I  G   +EDED I RE++V+T++H GYVK
Sbjct: 464 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 523

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGG+G  G+  ++ DFV  LF+ ++H  ++FF+  G VY+ K + +P  
Sbjct: 524 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++P    ES     ++ FAT+ G V++  L D+  I 
Sbjct: 584 GRTARGTPIINLIQIEQGETVNAVIPIESFESGH---FLFFATQQGIVKKTPLKDYNNIR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      +I++ T+ G  + FP   +R   GR + GV+GI  
Sbjct: 641 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGI-- 697

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                      H+S                ++D+ ++ +I +E 
Sbjct: 698 ---------------------------HIS----------------EDDAVIDMDIVDE- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+ KGFGKRT   ++RI  R GKGI+  +V+  N  G +V +  V +
Sbjct: 714 -------NNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVVGLKVVEE 764

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++ +++++  GT+IR  ++ I I  R T+GV + +T +D+ V +V R+
Sbjct: 765 DEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATVTRV 812


>gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
 gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
          Length = 822

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 558/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609


>gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8]
          Length = 888

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/917 (41%), Positives = 564/917 (61%), Gaps = 62/917 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A
Sbjct: 5   VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++
Sbjct: 65  RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG  H
Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244

Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G RV
Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EVV 
Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +  +
Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424

Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
           +D          +ID     + Y +  + T Y LS  Q  AIL+++L RLTGL +D +  
Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I  
Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F++ 
Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653
           G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  +  DE+S    +V FAT 
Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLKDENS----FVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG           M + L A  D +E +            +S     + 
Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATTDEEELLDEDGDEVGDDFAVS----RVV 764

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           SL                 +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881


>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
 gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
          Length = 872

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/893 (42%), Positives = 548/893 (61%), Gaps = 56/893 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFKKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q   +  LL D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG VAVI NP+I    LM+ I GPDFPTGA ILG   IK AY TGRGSI +RGV+
Sbjct: 188 LGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGMGAIKEAYTTGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +IE    +   DRE I++TE+PYQ NKAA++EKIAELV EKRI  IAD+RDESDR G R+
Sbjct: 248 NIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRIESIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+++LD ++ +IR + +  TA+ EL+            
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELIT----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 417 ---------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+L II+ E+  +K    TPRRT I     ++++ D I  E  ++ ++  GY+KR
Sbjct: 462 LARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ + AQ R  +G++   ++D+D +        H SVLFFS  G VY  K +++P+ S
Sbjct: 522 MPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++ +L+ F  I  
Sbjct: 582 RTSRGTPIVQLLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTELAAFSNIRA 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D++  V     E+ I++ ++LG  + F  +  ++   GR + GV+ + L
Sbjct: 639 NGLIAISLEEGDQLRWVRRARVEDSIIIGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD+++ M I+  A  D          ++ +      D ++I +   +++VE     E 
Sbjct: 699 KKGDELVGMDILPAAILDT---------LNTE----EPDIDDIETEDIETAVETTEVLET 745

Query: 790 CQELKLKE--------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            + L+  E         ++L ++  G+GKR     FR+ NR+G+G+ AT          L
Sbjct: 746 LENLEAVEVSSNASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKL 805

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  VN +++I++V+++G +IR  VN I I SR+  GV +    +D+ +  V
Sbjct: 806 ATLGIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGV 858


>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
 gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
          Length = 813

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/879 (43%), Positives = 548/879 (62%), Gaps = 87/879 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +++I DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRI + M ++  ++NK Y K A
Sbjct: 3   LKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YDAL RMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 63  RIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVRM 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +  H  + D+ K+T+ F+PNYD +  EPVVL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 123 NRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+  G +A++D+PDI +  LM  I GPDFPT   I G  GIK+AY TGRG+I +R    
Sbjct: 183 RELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCVGIKDAYETGRGTIKMRARVE 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+ SG R  +++TE+PYQVNKA +LE+IAELV++K+I  I D+RDESDR+G RVV+ L+
Sbjct: 243 VEE-SGRRNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLTLR 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G    VI NQLY++T+L+S F V M+A+   KPE   L G+L  F+ FR  V++RRT+Y
Sbjct: 302 QGDEPRVIENQLYKHTALESSFGVIMLAVVDNKPEVLNLKGVLNNFLDFRRLVIIRRTQY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  RAH+L GL  A+ +LDEV+ +IR +  P  A++ LM+R               
Sbjct: 362 ELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         S+VQ +AILE+RL RLTGL R+ I  E   +  EI+    ILSS +
Sbjct: 407 -----------FEFSDVQAQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSAA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  +I++E+  + D+    R+T I+    ++  ED I  E+MVVT+S  GY+KR PLSV
Sbjct: 456 LVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLSV 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKGR+G+  R+ED VT LF  STH  +L F++ G VY  KV+ +P   P A G
Sbjct: 516 YRSQRRGGKGRTGMSTREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L + + ERI T++P  E +  +   + V AT++G +++  LS +     +G  A
Sbjct: 576 KAIVNLLPVQKDERIQTVLPVKEFKEGF---FAVMATRNGVIKKTDLSAYSNPRSTGIRA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++SV      +D+ L ++ G+ +R      R   GR S GVRG+ L  G ++
Sbjct: 633 IVLDDDDELISVCVTDGSHDLFLMSRAGKSIRVNEREFRPL-GRVSRGVRGMKL-DGSRM 690

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + M ++    A                                                 
Sbjct: 691 VGMDVIEEGKA------------------------------------------------- 701

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               IL ++EKGFGKRT++ ++R  +R GKG+    V++ N  G++V    V +++QI++
Sbjct: 702 ----ILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERN--GSVVGFRQVGEDEQILM 755

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++D G LIR+PV +I    R T+GV + +  + E+VV V
Sbjct: 756 ITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDV 794



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 7/116 (6%)

Query: 788 ERC-QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E C ++L   E+ ++T+S  G+ KRT    +R   R GKG   T +S   E   + ++F 
Sbjct: 486 ELCIEDLIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKG--RTGMSTREE-DLVTSLFT 542

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            + +D +++ +++G +  + V EI     +  G   V +    KDER+ +V  ++E
Sbjct: 543 ASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDERIQTVLPVKE 598


>gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis]
 gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1]
 gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14]
          Length = 814

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/897 (41%), Positives = 565/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++                           +IS D E                    
Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNGEAKIMTFALVDAAEIKEEKE 814


>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
 gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
          Length = 929

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/886 (41%), Positives = 544/886 (61%), Gaps = 92/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    + DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK + K A
Sbjct: 81  LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL
Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A  +L DL K+TVD +PNYD +  EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV +    +IDNPD+  + LME++ GPDFPTG +I+G  GIK+AY TGRGSI +R   H
Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 320

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E T   R+++VVTEIPYQVNK  + EKIA+ V EK+I  I+D+RDES+R+G R+VI+LK
Sbjct: 321 VESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 380

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG    V+LN LY+ T LQS F +  +AL    P   +L  IL+ ++  + +VV RRT++
Sbjct: 381 RGEVPQVVLNNLYKRTQLQSNFGIIDLALVDGVPRTLSLREILRCYIDHQIDVVRRRTEF 440

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  R H+L GL  AV N+DE+V IIR S +   A+R + +R               
Sbjct: 441 DLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHER--------------- 485

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L ++Q  AIL++RL RLTGL R D+ +E++ L  +I    D+L+  +
Sbjct: 486 -----------FDLDDIQGEAILQMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHEN 534

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L +I  EL  + +     RRT+I  + + +++ ED I  EDMVVTV+H GYVKRVP+ 
Sbjct: 535 KILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 594

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q+RGGKG  GV +++ DFV +LF+ STH  VLFF++ G VY+ KV  LP+G+   +
Sbjct: 595 IYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTK 654

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G A++N+LSL++GE+I  ++    FP +       Y++FATK G V++  +S++ +  + 
Sbjct: 655 GNAIVNVLSLSEGEKIAAVITTRDFPAEN------YLMFATKQGMVKKTAMSEYDRTRKD 708

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+++V      + ++L +  G+ + F  S  R   GR + GVRGI L  
Sbjct: 709 GIIAINLKQGDELVNVRRVHPGDKVILCSSDGKAILFDESQARAM-GRGTSGVRGIMLKG 767

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
              ++ M                                EIT+   D             
Sbjct: 768 EATMLGM--------------------------------EITNGNGD------------- 782

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +  ++EKG+GKRT+  ++    R G+G+    ++   + G LVA   V    
Sbjct: 783 --------LFVITEKGYGKRTAVSEYPEHKRGGQGVFT--ITMTAKKGKLVACRVVGPQH 832

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +I+++S++G +IRV   +I    R+T+GV + +   D+ V ++ R+
Sbjct: 833 EIMIMSEEGVVIRVKAVDISKLGRSTQGVKVMNIGADDHVSAIARM 878


>gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
 gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
          Length = 820

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/891 (42%), Positives = 555/891 (62%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE+GI  V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM  +G      Y
Sbjct: 2   EERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ DL +DT+DF PNYDG  QEP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGEV+D  +AV  NPDI +  LME  I+GPDFPTG  ILG++ IK AY TG G IV+
Sbjct: 182 PHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYILGKSAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G+++ I+VTE+PY VNKA M+EK+++LVR+K+I  I ++RDES+R G RV
Sbjct: 242 RAKTEIEE-KGNKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ TSLQ+ F  N +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMISLYLEHQEEVIR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA DRAH+L GL  A+  +D ++ +IR S   +  +  LM+  +N SD    
Sbjct: 361 RRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLME-EFNMSD---- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                                 Q +AI E++L RL GL R  I ++LN L   I +  DI
Sbjct: 416 ---------------------KQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R RLL II  EL  +KD+    RRT I++G  D+EDED I  ED+++++++ GY+KR
Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y++Q RGG+G  G+   ++D V+ L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 515 MPVDTYKSQNRGGRGIKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L L++ E I +++     +   N N Y+ F TK G V+R  +++F  I 
Sbjct: 575 RSAKGLPVVNLLDLDKEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++ V+  +  + IL+    G+ VRF  S +R   GR S GV+GI++
Sbjct: 635 QSGKIAICLKDNDQLVQVKLTSGNDQILIAASNGKLVRFEESNVRPM-GRISSGVKGINV 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                                 D  E+  +  D   EG      
Sbjct: 694 --------------------------------------DGSEVVGMTTDK--EG------ 707

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   ++IL V+E+G+GK +   ++R+SNR GKG++    ++ N  G +VA+  VN 
Sbjct: 708 --------KYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERN--GKIVALRAVNG 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ +++++D G +IR+P+ ++  A RAT+GV +    ++ +V SVE + ++
Sbjct: 758 DEDLLIITDDGIMIRLPMEQVTTAGRATQGVRLIKVNENNKVSSVEVVEKA 808


>gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
 gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
          Length = 869

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/892 (41%), Positives = 561/892 (62%), Gaps = 85/892 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           + +E   I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM+ +G+  N
Sbjct: 6   ENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMLDLGLANN 65

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGNFGS+DGD PAA 
Sbjct: 66  KPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSIDGDFPAAM 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R QK A  +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG  GIAVGMAT
Sbjct: 126 RYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGASGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HN+ E ++  VA ID+ DI++  LM+ ++ PDFPTGA+I G TG++ A+ TGRG I
Sbjct: 186 NMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIYGYTGVQEAFETGRGRI 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE T+ +RE I+VTEIPYQVNKA M+E+ AEL+ EK+I  I++++DES++ G 
Sbjct: 246 VMRAKAEIE-TNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIKDESNKDGI 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL   +P+   L  +++ FV  R +V
Sbjct: 305 RIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGRPQLLNLKDLIRHFVDHRHDV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++        
Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQ-------- 416

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q RAIL++ L RLTGL RD I++E N L   I+   
Sbjct: 417 ------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQ 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL S+   + IIK EL  +K++    RRT IV    DM  ED I  ED+V+T+SH GY+
Sbjct: 459 SILDSKELRMQIIKDELNEMKEKYGDERRTTIVHSAEDMSMEDFIEDEDVVITISHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P + YR Q RGGKG  G   R+EDF+  L + S H  +LFF+  G  +  +V+ +P 
Sbjct: 519 KRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFWLRVYEIPE 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  ++G+A+ NI+++ + E+I   +     +D+    N Y++  TK G +++  L  + 
Sbjct: 579 GSRLSKGRAIQNIINIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYS 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G  A+ ++  D++L     T  ++I++  + G+ +RF    +R   GR + GVRG
Sbjct: 639 RPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPM-GRTATGVRG 697

Query: 727 ISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           ++LA   D+V+ M                          I+ D   +T            
Sbjct: 698 VTLAHDQDEVVGM--------------------------IAVDDPNVT------------ 719

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSEKG+GKRT   D+R++NR GKG++   V++  + GALVA+ 
Sbjct: 720 --------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTE--KTGALVAIK 763

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D +++++  G +IR+ V+E+R+  RAT+GV + +   ++ + SV +I
Sbjct: 764 NVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDAIASVAKI 815


>gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 838

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/900 (41%), Positives = 545/900 (60%), Gaps = 88/900 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  + I +EM++SYL+YA++VI+ RA+PD RDGLKP  RRIL  M  + +    K
Sbjct: 3   ERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I+G+  G YHPHG   +Y  L RMAQD++ R  LI+GQGNFGS+DGDPPAA RY
Sbjct: 63  FRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+      +++DL K TVD+ PNYD +  EPVVL +++PN+L NG  GIAVGMAT+I
Sbjct: 123 TEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATSI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  E+ DG   VIDNP++ ++ LM +I GPDFPTGA I G +GIK  Y TGRG+I++
Sbjct: 183 PPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGTSGIKEGYKTGRGTIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +H+E +   R+ IVVTEIPYQ+N+  +LE+IA LVRE+ +  I+D+R+ESDR G R+
Sbjct: 243 RAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSRL 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LK+G   +V+LNQLY++T LQ  FS+ M+AL   +PE   L  +L  ++  R+ V+V
Sbjct: 303 VIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNRPETLNLKQMLICYIEHRKVVIV 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++LL KA++RAHVL GL IA+ N+D V+ +I+ S   + ARR L+            
Sbjct: 363 KRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLIS----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE+Q  AIL++RL RLTGL +  I  E   L  +IKE   I
Sbjct: 412 ---------------TFSLSEIQANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQSI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++   +L IIK+++  +K++    RRT IV  + D+E ED I  E++ V +SH GY+KR
Sbjct: 457 LANEKLVLDIIKKDVAEIKEQFGDKRRTEIVGAVGDLEREDLITEENVTVIISHEGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS YR Q+RGGKG  G  M++ DF   LF+ STH  +LFF+  G VY  KV+ +P   
Sbjct: 517 LPLSAYRKQQRGGKGVIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQMG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              +G+ALIN+L L +GE +T+ +P      ++++  +V AT HG +++  L  +    +
Sbjct: 577 KITKGRALINLLELKEGENVTSFIPV----RNFDDRQLVMATSHGIIKKTVLKAYGNPKK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ LD  D ++ V+    + D++L T+ G+ VRF    +R   GR S GV+GI L 
Sbjct: 633 GGIIAINLDEGDTLIGVKLTNGKQDLILGTEQGKAVRFSEEDVRS-VGRVSRGVKGIKLK 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V  M +V                                   ++SS+         
Sbjct: 692 NGDKVCGMVVV----------------------------------DDESSL--------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     +T+ E GFGKRT+  ++   NR G+G+     ++ N  G +V +  V + 
Sbjct: 709 ----------MTICENGFGKRTNFEEYSAKNRGGQGVINIKTTERN--GKVVGLLDVRET 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAES 908
           D++I+++  G +IR PVN IRI  R T+GV +F   K ++++SV R+   E+   D+ E+
Sbjct: 757 DELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKADKLISVARVIPEENPATDDLET 816


>gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 815

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/883 (42%), Positives = 553/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ K+TVDF  NYD S +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM R           
Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------YKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQRRGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    +    +N Y+ F T++G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAEHD--DNSYLFFTTRYGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK+G  VRF  S +R   GR + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNM-GRAATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  ++                        IS D E                    
Sbjct: 693 AGDHVVGASV------------------------ISDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++   +R GKG++  ++++ N  G L  +  VN +
Sbjct: 709 ---------VLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKN--GPLAGLMAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + ++++++ G +IR  V  I    RAT GV +    K  ++V+
Sbjct: 758 EDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVT 800


>gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
 gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
          Length = 875

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 544/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV +N+
Sbjct: 3   ESSGENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++++Y+ + RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 63  AHKKSARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  LL DL KDTVDF+PN+D S  EP VL A++PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVVDG +A IDN +I +  LME ++ PDFPTG +I G  G+++A  TGRGSI+
Sbjct: 183 MAPHNLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIYGYNGVRSAMETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +  E +   REQI+VTEIPY +NKAAM+E+IA L+ +K++  I+D+RDESDR+G R
Sbjct: 243 MRSKAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V +LK+ A  +++LN L++YT LQ+ F VN VAL   +P    L  ++K +V  R  V+
Sbjct: 303 IVFDLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGRPVLLNLKDLIKHYVDHRIVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A  RAH+L GL IA+ NLD V+ +IR + +PETA+  LM++         
Sbjct: 363 TRRTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q RAIL++RL RLTGL R+ I  E   + I I +  D
Sbjct: 414 -----------------FELSEIQARAILDMRLQRLTGLEREKIVKEYEEIMILIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++  R   IIK EL  +K+     RRT+I     +  DED I  E+M++T+S  GY+K
Sbjct: 457 ILANEYRKYEIIKTELTDIKERYGDARRTQIEFSAEEFSDEDMIADEEMLITISKEGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS YR Q RGG G  GV  +D DF   LF  +    +L F+  G ++  KV+ +P G
Sbjct: 517 RTPLSEYRTQTRGGVGSRGVKTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+ + N++SL  G+ I +++      DE   NN Y++  T+ G +++  L  + +
Sbjct: 577 SKTSKGRPIQNLISLESGDSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSR 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ ++  D +L+V     +NDI++ +  G+ VRF    +R   GR + GVRGI
Sbjct: 637 PRTNGIIAISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPM-GRTAAGVRGI 695

Query: 728 SLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L   D +VI M             +C                               IS
Sbjct: 696 NLNDPDNKVIGM-------------VC-------------------------------IS 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E  Q        +L VSE GFGKR++   +R++NR GKG+   + +  +++G LVA+  
Sbjct: 712 REDAQ--------LLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNAT--DKVGKLVAIRE 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V + D +++++  G  IR+ V +IR A R T+GV +   +  + + SV RI
Sbjct: 762 VTEEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSVTRI 812


>gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1]
 gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7]
 gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1]
          Length = 888

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/917 (41%), Positives = 564/917 (61%), Gaps = 62/917 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A
Sbjct: 5   VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++
Sbjct: 65  RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG  H
Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244

Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G RV
Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EVV 
Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +  +
Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424

Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
           +D          +ID     + Y +  + T Y LS  Q  AIL+++L RLTGL +D +  
Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I  
Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F++ 
Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653
           G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  +  DE+S    +V FAT 
Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG           M + L A  D +E +            +S     + 
Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATTDEEELLDEDGDEVGDDFAVS----RVV 764

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           SL                 +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881


>gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4]
 gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4]
          Length = 852

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/901 (40%), Positives = 560/901 (62%), Gaps = 88/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 E 905
           E
Sbjct: 822 E 822


>gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
 gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
          Length = 909

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/896 (42%), Positives = 542/896 (60%), Gaps = 52/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+VI+N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++  
Sbjct: 366 YELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G  G +Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           +V+ +P  S  A+G+ ++N+L L   E IT I+P   FPE      N YV  AT  G V+
Sbjct: 606 RVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L+ F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     I +          D  +             S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASNTIDVE---------DAEVENDDSDDNDDSSDSNVVSRIVSLVVP 769

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            + E                 +L     G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 770 ETGE-----------------VLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN-- 810

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G L++   +++  +++L+SD GTL+R    E+    R  +GV +   +  E +V V
Sbjct: 811 GELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGV 866


>gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A]
 gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A]
          Length = 855

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 562/905 (62%), Gaps = 87/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE
Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821

Query: 906 AESTE 910
             +T+
Sbjct: 822 NSNTD 826


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/891 (42%), Positives = 549/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG   EPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKATIEENN-NKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFYYLEHQVIVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIERFG------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I NE   L  +I E  +
Sbjct: 415 -------------------LSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFSDERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P  E+  S N L+  FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV-ENFDSDNFLF--FATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M +V   D + D                                        
Sbjct: 692 DDDDEVIGMDVV---DRELD---------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 709 ----------ILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S
Sbjct: 757 EEDLMIITSSGTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVCRADKS 807


>gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 842

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/867 (42%), Positives = 540/867 (62%), Gaps = 67/867 (7%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           +HRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L+
Sbjct: 1   MHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGD  AA RYTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR 
Sbjct: 61  DGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           PN+L+NG  GIAVGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I
Sbjct: 121 PNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGII 180

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
            G +G++  Y TGRG +V+R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV E
Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTE 240

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           KR+  I+D+RDESD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P 
Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPR 300

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L+ F+  R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P
Sbjct: 301 LLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTP 360

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTR 455
             A++ELM RSW++  ++D++   +  +               + +  DG   LS+ Q +
Sbjct: 361 PIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQ 420

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            IL++RL RLTGL +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    
Sbjct: 421 EILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDE 480

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RR++I     +++ ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D
Sbjct: 481 RRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDD 540

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           ++  LF+ +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P
Sbjct: 541 WIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILP 600

Query: 636 FPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
             + DE      +V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++
Sbjct: 601 VKQFDEQH----FVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQH 656

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           D++L +  G+ VRF  + +R   GR + GVRG++L +G QVI+M +   A A+       
Sbjct: 657 DVMLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLV---APAE------- 705

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                             T+ + + +V G+               +LT +E G+GKRT  
Sbjct: 706 ------------------TAGEGEQAVAGS---------------VLTATENGYGKRTPI 732

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            ++    R  KG+ A   S+ N  G +VA   V   D+I+L++  G LIR  V+EIR   
Sbjct: 733 SEYTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMG 790

Query: 875 RATKGVVIFSTAKDERVVSVERIRESE 901
           RAT+GV + +  +  ++  ++R+ ES+
Sbjct: 791 RATQGVTLIAVGEGNKLSGLQRVVESD 817


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/901 (41%), Positives = 549/901 (60%), Gaps = 86/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +E+  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  ++N+L +++GE +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                          D   +   KN       + 
Sbjct: 692 ITLGDEDQVVGMEIV------------------------EEDMNVLIVTKNGYGKRTPVD 727

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E R Q                             +R GKG++  +++  N  G LVAV  
Sbjct: 728 EYRLQ-----------------------------SRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E  D +
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEEEDGS 816

Query: 907 E 907
           E
Sbjct: 817 E 817


>gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143]
 gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143]
          Length = 827

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKR+  I  +RDES+R+G R V
Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 307 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 367 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 416 ---------------FRLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
               R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 461 VKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 521 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 581 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 639 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 698 EGDTVVGASVI----TDQDE---------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 714 ---------VLIITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKN--GPLAGLLTVKGD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 763 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 813


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/900 (42%), Positives = 559/900 (62%), Gaps = 94/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI + +  SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+     Y K A
Sbjct: 3   VIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+AL RMAQ +S+R+ LI+GQGNFGS+DGD  AA RYTE RL
Sbjct: 63  RIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEARL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  + +IDN D  L+ +++ ++GPDFPTG  I G++GI  AY TGRGSI IR   H
Sbjct: 183 EELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIFGKSGIIEAYKTGRGSIKIRAKHH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++E IV+ E+P+QVNKA ++EKI++LV++K +  I+++RDESDR+G RVVIELK
Sbjct: 243 IEH-KGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +++ILN LY++T +Q  F +NM+ +   +P+ F L  +L  F+  R+ VV+RRT Y
Sbjct: 302 KDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTIY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+  L+ R               
Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++VQ +AIL++RLARLT L  + + NE   L  +I+    IL   +
Sbjct: 407 -----------FELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDEN 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L G+IK ELL +K +  TPR T I E    ++ ED I  E+MVVT++H GYVKRVPL  
Sbjct: 456 ILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+  + + ++DF+ D ++ ++H +++  +  G ++  KV+R+P GS  ++G
Sbjct: 516 YERQNRGGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKG 575

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KA++N+++L++ E+I TI+   + DES      + F TK+G V+R  LS+F  I  +G  
Sbjct: 576 KAIVNLINLDKDEKIQTIIKTEDFDESKS----LAFFTKNGIVKRTNLSEFKNIRSTGVR 631

Query: 675 AMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           A+ +D  DE+++ +     + ++ + TK G  +RFP+  +R   GR + GV GI    +G
Sbjct: 632 AITIDEGDELVTAKIVEPGDKELFIVTKKGMAIRFPVDTVREM-GRTARGVTGIRFKIEG 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+  A+ L      DE                                          
Sbjct: 691 DEVVG-ALALQ-----DEN----------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q ILT+SEKGFGKRT +  +R++NR GKG+ A  ++  N+ G LV V     +  
Sbjct: 704 -----QEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEKDHD 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-----ERIRESEIVDEAE 907
           +++++  G +IRV ++ I    + T+GV +      ++VVS+     E+  E  + D+ E
Sbjct: 757 LMVLTSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEEEGTLFDDEE 816



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 750 ERICYMKHMSAQRRLISG-DTEEITSLKND------SSVEGNISEERCQELKLKEQFILT 802
           E+I Y+  +     +++G   +E+  +K        +++E +      ++L   E+ ++T
Sbjct: 442 EKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVT 501

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++ +G+ KR     +   NR GKG +A     I E   +   +  N +D +++++D+G L
Sbjct: 502 ITHRGYVKRVPLKAYERQNRGGKGKKAL---TIYEDDFIEDFYVANSHDTLMIITDRGQL 558

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             + V  I   SR +KG  I +    ++   ++ I ++E  DE++S
Sbjct: 559 HWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQTIIKTEDFDESKS 604


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/842 (43%), Positives = 529/842 (62%), Gaps = 86/842 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y 
Sbjct: 5   EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE
Sbjct: 65  KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP 
Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R 
Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VI
Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RR
Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R            
Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AILE+RL RLTGL RD I NE N L   I     IL+
Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+ 
Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P     
Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+NIL L   E+I T++ F + +      Y+   TK G V++  L DF  I ++G
Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +G
Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  + M I +      DE+                                         
Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D+
Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758

Query: 853 II 854
           ++
Sbjct: 759 LM 760



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 16/161 (9%)

Query: 747 DYDERICYMKHMSA----QRRLISGDTEEITSLKNDSS------VEGNISEERCQELKLK 796
           +Y+E +  + +++A    + RL+    EE+  +K   S      +E   +E   ++L  +
Sbjct: 441 EYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQE 500

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++  G+ KR SS  +    R GKGI+A   +K ++    V V   + N  ++  
Sbjct: 501 EDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAM-TTKEDDFVENVLVTSTHSN--LLFF 557

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           + KG + ++   E+  A R  KG   V I     DE++ +V
Sbjct: 558 TTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/906 (41%), Positives = 564/906 (62%), Gaps = 93/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K A
Sbjct: 7   IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNL 186

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++RG +
Sbjct: 187 SEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+V+++
Sbjct: 247 EIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDV 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+RRTK
Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVIRRTK 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R              
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +IL + 
Sbjct: 412 ------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR PLS
Sbjct: 460 DLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+  A+
Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAK 579

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+A+ N+L++   +++     +     D    N+ Y++F TK G +++  L  + +  ++
Sbjct: 580 GRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV  GR + GV+G++L +
Sbjct: 640 GVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGMTLDE 698

Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M             IC                                    
Sbjct: 699 DNTDEVVGM-------------IC------------------------------------ 709

Query: 790 CQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +K KE + +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+  V 
Sbjct: 710 ---IKDKEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVT 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVD 904
           D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++    E EI +
Sbjct: 765 DENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEIAE 824

Query: 905 EAESTE 910
           +    E
Sbjct: 825 QKAEQE 830


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/906 (41%), Positives = 564/906 (62%), Gaps = 93/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K A
Sbjct: 7   IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNL 186

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++RG +
Sbjct: 187 SEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+V+++
Sbjct: 247 EIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDV 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+RRTK
Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVIRRTK 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R              
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +IL + 
Sbjct: 412 ------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR PLS
Sbjct: 460 DLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+  A+
Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAK 579

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+A+ N+L++   +++     +     D    N+ Y++F TK G +++  L  + +  ++
Sbjct: 580 GRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV  GR + GV+G++L +
Sbjct: 640 GVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGMTLDE 698

Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M             IC                                    
Sbjct: 699 DNTDEVVGM-------------IC------------------------------------ 709

Query: 790 CQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +K KE + +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+  V 
Sbjct: 710 ---IKDKEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVT 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVD 904
           D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++    E EI +
Sbjct: 765 DENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEIAE 824

Query: 905 EAESTE 910
           +    E
Sbjct: 825 QKAEQE 830


>gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5]
 gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5]
          Length = 928

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/932 (40%), Positives = 547/932 (58%), Gaps = 99/932 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M  +  ++NK Y K
Sbjct: 3   ESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR  +++GQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+L+NG  GIAVGMATN+  H
Sbjct: 123 RMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  +NP I  + LM  I GPDFPTG +I GR GI +AY TG+G + +RG 
Sbjct: 183 NLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIYGRAGILDAYRTGKGRLHVRGR 242

Query: 254 SHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             IE  S      DRE+IV TE+PYQ NKA ++E+IAELVR+K+I  I ++RDESD+ G 
Sbjct: 243 YIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EV
Sbjct: 303 RIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI- 427
           V RRT + LNKAR R H+L GL +A+AN+DE++  I+ S N   AR  L+  +W +  + 
Sbjct: 363 VTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGSGSVV 422

Query: 428 ------------KDLIDLIDDSSY--TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                        D I+  D  +    I +  +  LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   L  EI     IL    +L+ II  E++ ++D     RRT I++  +D   ED I
Sbjct: 483 TEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+  Y AQ+RGGKG+S   M+++D +  L + STH +VL F+
Sbjct: 543 PEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLIVTSTHATVLCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---EDESSWNNL---- 646
             G V+  + + +PI S  ARG+ L+N++ LN  E +TTI+P P   E+ SS        
Sbjct: 603 DTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVEELSSKGETSADV 662

Query: 647 -----------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
                            +V FAT +G V+R +L  F  I  +G IA+ L+  D+++S   
Sbjct: 663 TLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSARI 722

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                +++L    G+ +RF  +  R   GR + GVRG+ L   + + S+ ++        
Sbjct: 723 TNGSQEVMLFASSGKAIRFNETDARAM-GRTAKGVRGMRLTADEFIKSLVVI-------- 773

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                           E ++ E            IL   E GFG
Sbjct: 774 --------------------------------EDDVRE------------ILIACENGFG 789

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT   +F   NR G G+ A   S  N  GALV    V+  D IIL+SDKGTL+R PV  
Sbjct: 790 KRTFIDEFNTQNRGGGGVIAIKTSTRN--GALVRATKVDSTDDIILISDKGTLVRTPVEH 847

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  + R T+GV +   +KDE++V++ R+   E
Sbjct: 848 VASSGRNTQGVTLIRLSKDEKLVAMARVEHEE 879


>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
 gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
          Length = 864

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/866 (43%), Positives = 545/866 (62%), Gaps = 44/866 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GK
Sbjct: 1   MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143
           YHPHG+ A+YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRLQ   +  LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG V
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259
           A+I NP+I    LM+ I GPDFPTGA +LG +GI+ AY TGRGSI +RGV+ IE    + 
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGTSGIREAYTTGRGSITMRGVATIETVQQRG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DRE I++TE+PYQ NKAA++EKIA++V EKR+  IAD+RDESDR G R+VIELKR + 
Sbjct: 241 RQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDSY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN LY+ T LQ+ F  NM+AL   KPE   L   L+ F+ FR E + RRT+Y L K
Sbjct: 301 PRVVLNNLYKQTPLQANFGANMLALVNGKPEILNLKKFLEVFLDFRIESITRRTRYELRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A  R H+L GL IA++ LDE++ +IR +P+  TA+ EL+                     
Sbjct: 361 AEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELI--------------------- 399

Query: 440 TIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                 T Y LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DIL+ R R+L
Sbjct: 400 ------TNYGLSEVQADAILQMQLRRLTALEADKIRQEHEDLQTQIADLQDILARRERIL 453

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ E+  +K+   TPRRT I+ G  ++++ D I  E  ++ V+  GY+KR+P++ + A
Sbjct: 454 EIIETEIAQLKESFSTPRRTVILPGEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEA 513

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q R  +G++   ++D+D +        H S+LFFS  G VY  K +++P+ S  +RG A+
Sbjct: 514 QSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAI 573

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           + +L + + E+IT+I+P   DE S    Y+V  TK GN+++ +L+ F  I  +G IA+ L
Sbjct: 574 VQMLPIPREEKITSIVPV--DEFSREE-YLVMLTKGGNIKKTELASFSNIRANGLIAISL 630

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVIS 737
           +  D++  V     E+ IL+ ++LG  + F  +  ++    R + GVR + L KGD+++ 
Sbjct: 631 EEGDQLRWVRRARVEDSILVGSRLGMAIHFRCTHEQLRPLSRATRGVRAMKLKKGDELVG 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I+  A  D    +   +  +A+   +  +  EI +++ + +VE    EE  +      
Sbjct: 691 MDILPAAILDT---LNTDEPETAEIEAVEIEAVEIEAVEIE-AVETENQEETAEVTSTGS 746

Query: 798 --QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQII 854
              ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +  V ND+D+I+
Sbjct: 747 IGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKGKDKLATLRIVNNDHDEIM 806

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGV 880
           +V+ +G +IR  VN I I SR+  GV
Sbjct: 807 MVTKRGIIIRQAVNAISIQSRSATGV 832


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/906 (41%), Positives = 564/906 (62%), Gaps = 93/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K A
Sbjct: 7   IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNL 186

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++RG +
Sbjct: 187 SEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+V+++
Sbjct: 247 EIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDV 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+RRTK
Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVIRRTK 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R              
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +IL + 
Sbjct: 412 ------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR PLS
Sbjct: 460 DLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+  A+
Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAK 579

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+A+ N+L++   +++     +     D    N+ Y++F TK G +++  L  + +  ++
Sbjct: 580 GRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV  GR + GV+G++L +
Sbjct: 640 GVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGMTLDE 698

Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M             IC                                    
Sbjct: 699 DNTDEVVGM-------------IC------------------------------------ 709

Query: 790 CQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +K KE + +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+  V 
Sbjct: 710 ---IKDKEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVT 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVD 904
           D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++    E EI +
Sbjct: 765 DENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEIAE 824

Query: 905 EAESTE 910
           +    E
Sbjct: 825 QKAEQE 830


>gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300]
 gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300]
          Length = 822

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++ + D                                             
Sbjct: 693 EGDTVVGASVITNQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T  EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 708 ------EVLIIT--EKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808


>gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
 gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
          Length = 834

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/893 (43%), Positives = 542/893 (60%), Gaps = 87/893 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I +E++ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++  ++NK Y K AR+ 
Sbjct: 11  VRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKPYKKSARVV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL RMAQD+++R  L++GQGNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRYTEVRMAKL 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A+ LL D+ KDTVDF  NYDGS +EPVVL  + P +L+NG  GIAVGMATNIP HNLGEV
Sbjct: 131 ANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNIPPHNLGEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               VA++DNPDI +  LM  + GPDFPT   I G  GI+ AY  GRGSI IR  ++IE 
Sbjct: 191 ARALVALLDNPDIGVRELMRHVPGPDFPTRGFIHGAEGIEQAYRDGRGSIQIRAKANIET 250

Query: 259 TSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +  ++  I+VTE+PYQVNKA +LEK+AELV++K+I  I+DLRDESDR G RVV +L+R 
Sbjct: 251 VARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMRVVFDLRRD 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A   V+LNQL+++T +Q+ F +NM+A++  +P    L  +L+ F+  R E+V+RRT + L
Sbjct: 311 AVPQVVLNQLFKFTQMQTTFGINMLAIDRGRPRLMGLKDVLELFIEHRREIVLRRTAFDL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ NLDEV+ +IR + NP  A+  LM R                 
Sbjct: 371 AKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSR----------------- 413

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE Q +AILE+RL RLTGL RD I  E   +  EI     IL S   +
Sbjct: 414 ---------FSLSEKQAQAILEMRLQRLTGLERDKIMAEYREVIKEIARLRHILESDEEV 464

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             II++E L + +E    RRT IV  + D+E ED I  E+MVVT+SH GY+KR P S+YR
Sbjct: 465 RRIIREETLLLAEEFGDKRRTEIVGRVSDIELEDMIAEEEMVVTLSHGGYIKRTPTSLYR 524

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG  G+  +DEDFV DLF  STH+ +L F+  G +Y  KV  +P     +RGKA
Sbjct: 525 AQRRGGKGSRGMATKDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQAGRASRGKA 584

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N++ +   E ++T++   E         V+ AT+ G +++ +L  F +    G IA+ 
Sbjct: 585 IVNLVQMLPDESVSTVLAVRE---FVEGRQVIMATQKGVIKKTELMSFSRPRAGGIIAIN 641

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D ++S      E ++ L T+ GQ +RF  S +R   GR + GV+GI          
Sbjct: 642 LAEGDHLVSARLTDGEMEVFLATRQGQAIRFHESQVRSM-GRAAAGVKGI---------- 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                  D ++D+++  M+                       +V G  +           
Sbjct: 691 -------DVEHDDQVVAME-----------------------AVAGAPT----------- 709

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +LT++E GFGKRT   ++   NR+GKG+     +  N  G +V+   V D+D+++L++
Sbjct: 710 --MLTITENGFGKRTRMDEYPARNRAGKGVITIKTTTRN--GHVVSALVVGDDDEVMLIT 765

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D G +IR+ V  I +  R T+GV +      ER+V+V R+ E    DE E+ E
Sbjct: 766 DVGKVIRMKVGGISVIGRNTQGVKLIDLEPGERLVAVARLAEPGD-DEVEAGE 817


>gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
 gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
          Length = 822

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++ + D                                             
Sbjct: 693 EGDTVVGASVITNQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T  EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 708 ------EVLIIT--EKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/904 (41%), Positives = 550/904 (60%), Gaps = 86/904 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +E+  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  ++N+L +++GE +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                          D   +   KN       + 
Sbjct: 692 ITLGDEDQVVGMEIV------------------------EEDMNVLIVTKNGYGKRTPVD 727

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E R Q                             +R GKG++  +++  N  G LVAV  
Sbjct: 728 EYRLQ-----------------------------SRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E     
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEEDGSE 816

Query: 907 ESTE 910
           E++E
Sbjct: 817 EASE 820


>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
          Length = 819

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/881 (43%), Positives = 547/881 (62%), Gaps = 82/881 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M ++G+ ++K Y K ARI 
Sbjct: 14  IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSARIV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++A+Y A+ R+AQ+++ R LLI G GN+GS+DGD  AA RYTE R+ K 
Sbjct: 74  GEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMAKI 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           ++ LL+D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HN GEV
Sbjct: 134 SNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAGEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG VA+I+NPDI +D L+  I GPDFPTG +I GR+GI  AY TGRG + + G   IE+
Sbjct: 194 CDGIVAMIENPDITIDELITYITGPDFPTGGIINGRSGIIEAYKTGRGKVRVAGKIKIEE 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +   +E I+V E+PYQVNKA ++E+IAELVR K++  I+DLRDESDR G RVVIELKRG 
Sbjct: 254 SKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELKRGE 313

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +++ILN LY+YT LQ+ F +  +AL    P    L  IL+ ++  R  VV RRTK+ L+
Sbjct: 314 ESELILNSLYKYTDLQNTFGIIFLALVDNAPRVLNLKEILQNYLKHRYSVVTRRTKFELD 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L G  IA+ N+DEV++IIR S +   A+ +LM                    
Sbjct: 374 KAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLM-------------------- 413

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SEVQ +AIL++RL RLTGL R  I  E   L + I+E   ILS   ++ 
Sbjct: 414 ------AGFAFSEVQAKAILDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIY 467

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK+E+  +K++   PRRT I +  +++  ED I  E++VVT++  GYVKR P+ VYRA
Sbjct: 468 AIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRA 527

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGG G S   + ++D + D++I     S+L F++ G V+  KV+ +P  S QARG+ +
Sbjct: 528 QKRGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLI 587

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            NI+ L + E ++TI+   E E   +   + F T+ G V++  L  F  IN++G  A+ L
Sbjct: 588 SNIIKLQEDEMVSTIIKVREFEKDKD---IFFVTRKGVVKKTNLELFASINKAGIKAIGL 644

Query: 679 DSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              DE++   + + T +++I L T+ G  +RF  + +R   GR + GV+GI+L   D ++
Sbjct: 645 KDDDELIFAGLTSGTLKDEIFLATREGFAIRFSENDVRSM-GRTASGVKGITLRPEDVIV 703

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           + AI+ +A  D                 +SG T                           
Sbjct: 704 AGAII-YASED-----------------LSGKT--------------------------- 718

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT+SE+G+GKRT   ++R+ +R GKGI  T++ K  + G +  V  V+D+ +I+L+
Sbjct: 719 ---ILTISEEGYGKRTKLEEYRLQSRGGKGI--TNLKKNTKTGKISDVKIVDDSSEIMLI 773

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +GTLIR  VN I I  RAT GV I    ++E+V S  +I
Sbjct: 774 TSEGTLIRTQVNSISIIGRATSGVRIMKVRENEKVASTVKI 814


>gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
 gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
          Length = 852

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/901 (40%), Positives = 560/901 (62%), Gaps = 88/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL E++D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 E 905
           E
Sbjct: 822 E 822


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/890 (41%), Positives = 553/890 (62%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +  + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +I+NP++ +  LM  I+GPDFPT  +I+G +GIK+AY TGRG I++R
Sbjct: 183 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++  G + +IV+TEIPYQVNK+ ++E +A+LV+ KRI  I+D+RDESDR G R+V
Sbjct: 243 AKTEIQEEKG-KNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+A++ LNQLY++T +Q  F V M+ L   +P+   L  +L  ++ F+EE++ R
Sbjct: 302 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+  +DEV+ +IR S   E AR  L+ + +N        
Sbjct: 362 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK-FN-------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 413 -----------------LSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++S LL +IK EL+ ++D+    RRT I     D+  ED I  E++V+T++H GY+KR+
Sbjct: 456 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH+ +LFF++ G VYK K + +P    
Sbjct: 516 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L+  E+I  ++ F E +   ++ Y + ATK G V++ +++ +  I ++
Sbjct: 576 TAKGTNLVNLLPLDGDEQIQAVISFKEID---DDNYFIMATKRGLVKKTEINQYASIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+  T ++++L+ TK G  +RF    +R   GRN+ GV+ I+L K
Sbjct: 633 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M                                +I S K D             
Sbjct: 692 KDIAVAM--------------------------------DIASNKED------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL VSE GFGKRT   ++ I  R GKGI     ++  + G +V    V D D
Sbjct: 707 --------ILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V++I   SR   GV +  T +++RVV++ +I  +E
Sbjct: 757 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 806


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/890 (41%), Positives = 553/890 (62%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +  + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 4   DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +I+NP++ +  LM  I+GPDFPT  +I+G +GIK+AY TGRG I++R
Sbjct: 184 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++  G + +IV+TEIPYQVNK+ ++E +A+LV+ KRI  I+D+RDESDR G R+V
Sbjct: 244 AKTEIQEEKG-KNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+A++ LNQLY++T +Q  F V M+ L   +P+   L  +L  ++ F+EE++ R
Sbjct: 303 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+  +DEV+ +IR S   E AR  L+ + +N        
Sbjct: 363 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK-FN-------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 414 -----------------LSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++S LL +IK EL+ ++D+    RRT I     D+  ED I  E++V+T++H GY+KR+
Sbjct: 457 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH+ +LFF++ G VYK K + +P    
Sbjct: 517 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L+  E+I  ++ F E +   ++ Y + ATK G V++ +++ +  I ++
Sbjct: 577 TAKGTNLVNLLPLDGDEQIQAVISFKEID---DDNYFIMATKRGLVKKTEINQYASIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+  T ++++L+ TK G  +RF    +R   GRN+ GV+ I+L K
Sbjct: 634 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M                                +I S K D             
Sbjct: 693 KDIAVAM--------------------------------DIASNKED------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL VSE GFGKRT   ++ I  R GKGI     ++  + G +V    V D D
Sbjct: 708 --------ILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V++I   SR   GV +  T +++RVV++ +I  +E
Sbjct: 758 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 807


>gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
 gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
          Length = 818

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/901 (41%), Positives = 561/901 (62%), Gaps = 89/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  + EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQTEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 SKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRKGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNTDVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V     D DE                                        
Sbjct: 693 EGDKVVGASVV----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R+GKGI+  ++++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESEIVDEA 906
           + +++++D G +IR  V  I    R+T+GV +    +D ++V+   +    ++ E+V+E 
Sbjct: 758 EDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVTFTTVQPDDKDEEVVEEN 817

Query: 907 E 907
           E
Sbjct: 818 E 818


>gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/897 (41%), Positives = 564/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS  M+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFTMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++                           +IS D E                    
Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
          Length = 793

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/865 (43%), Positives = 538/865 (62%), Gaps = 92/865 (10%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +N++AL   +P+  +L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 301 QTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LD V+ +IR S   E AR  L+++                            L+E Q
Sbjct: 361 LDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQ 394

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E  SL   I E  DIL++ +R+L II++EL  +K+  +
Sbjct: 395 AQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEARVLEIIREELNEIKERFN 454

Query: 514 TPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT IV  GL  +EDED I RE++V+T++H GYVKR+P S YR+Q+RGGKG  G+   
Sbjct: 455 DERRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTN 514

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           ++DFV  L   STH ++LFFS+ G VY+ K + +P     A+G  +IN+L + +GE I  
Sbjct: 515 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 574

Query: 633 IMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I+P   F E++      Y+ F TK G  +R  LS F  I  +G IA+ L   DE+++V  
Sbjct: 575 IIPVSTFDEEQ------YLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRL 628

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              +  I++ TK G  +RFP   +R   GR + GV+GI+L   D V+ M I         
Sbjct: 629 TDGKKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGITLTDDDVVVGMEI--------- 678

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                    L+ DS V                   L V+E G+G
Sbjct: 679 -------------------------LEEDSHV-------------------LIVTENGYG 694

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT + ++R+ +R GKG++   ++  N  G LV V      + +++++  G LIR+ +N+
Sbjct: 695 KRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATKGEEDLMIITASGVLIRMDIND 752

Query: 870 IRIASRATKGVVIFSTAKDERVVSV 894
           I    R T+GV +   +  E V +V
Sbjct: 753 ISTTGRVTQGVRLIRMSDQEHVATV 777


>gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
 gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
          Length = 848

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/897 (41%), Positives = 554/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++    Y
Sbjct: 3   EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD++ RMAQ WS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD R N+D +  EPVVL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G +A IDN +ID+D LM+ I  PDFPTG +I G  G+K+A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIYGYDGVKDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE+  G RE I+V+EIPYQVNKA M++K AELV EK+I  I+++RDESDR G R+V
Sbjct: 243 AKSVIEEVKG-RECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA  RAH+L GL IA  N+DEV+  IR S N + AR +L+ R           
Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E +++   I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK EL  +KD+    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYEIIKGELAHIKDKYGDDRRSVIEYAGGDMSIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++ Q +++   +   +  DE+  N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEQDDKVKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L  K G+ +RF  +  R   GR + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALKSGKSIRFEEAKTRPM-GRTASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+VI M  V                                   ND          
Sbjct: 695 QHDKDEVIGMVAV-----------------------------------NDM--------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  IL VSEKGFGKR+   D+RI+NR GKG++  ++S+  + G LVA+  V+
Sbjct: 711 --------ESNILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           D++ +++++  G  IR+ V ++R+  RAT+GV + +   ++ + +V ++   E V E
Sbjct: 761 DSNDLMIINRSGLTIRMAVEDLRVMGRATQGVRLINIKDNDSIAAVAKVAHEEEVPE 817


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/897 (41%), Positives = 544/897 (60%), Gaps = 86/897 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+  N+   K
Sbjct: 9   RNMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+I+G+VMGKYHPHG++AIYD+L RMAQ +++R  L++GQGNFGSVDGDPPAA RYTE 
Sbjct: 69  SAKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEA 128

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL+D+ K+TVDF+PNYD +  EP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 129 RLSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 188

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+++  + +I +P  +L  +ME ++GPDFPTG  ILGR GI +A+  GRG + +R  
Sbjct: 189 NLTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFILGRQGILDAFIRGRGQLKLRAK 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK   DREQI+VTEIPYQVNK+ ++E  + LV EK++  I D+RDESDR G R+V E
Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG  A+VILN LY++T LQ  F + M+++   +P    L+ ++K F+  R EVV RRT
Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRELGLVDMIKHFIDHRIEVVRRRT 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KARDR H+L+G   A+ +LDEV+R+IR S +P+ AR  L+               
Sbjct: 369 EYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLIT-------------- 414

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   S+ Q +AI+EL+L RLTG+ R  I +EL  +   I E ++IL S
Sbjct: 415 ------------TFQFSDKQAQAIIELQLQRLTGMERQKILDELGEIQRRIAEYVEILGS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L  +I +EL  V+      RRT+I+E   ++  ED +  ED+ +TV+  GY+KR  +
Sbjct: 463 DKVLRDLIIKELKEVQKNYGDERRTQIIEDTGEIRLEDLVAVEDVAITVTRGGYLKRTSV 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGGKGR G+  R EDFV  L + STH+ +L F++ G VY  K + +P  +   
Sbjct: 523 DTYRRQTRGGKGRIGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIG 582

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GK L N+++L   E     +     +    N Y+V  TKHG +++++L++F      G 
Sbjct: 583 KGKHLTNLINLQGDEEAKAFLSV---KDFVANQYIVMVTKHGVIKKSELTEFDNPLSRGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  DE++  +    +N I L +  GQ +RF    +R   GR + GVR +SLA GD
Sbjct: 640 IAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAM-GRQARGVRAMSLADGD 698

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++ M                                                     E+
Sbjct: 699 YLVGM-----------------------------------------------------EV 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             K+  IL+++E G+GKRT   D+R+++R GKG+   ++   N+ G +V +  V ++ ++
Sbjct: 706 VEKDGLILSIAENGYGKRTPLEDYRLTSRGGKGV--INMKTTNKTGRVVGILSVKEDSEL 763

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAEST 909
           ++VS  G +IR+  + IR A R+T+GV + +   D++V +   I ES++V D+ + T
Sbjct: 764 MIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDKVAAASVIPESDVVPDDGQET 820


>gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
 gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
          Length = 848

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/890 (41%), Positives = 551/890 (61%), Gaps = 85/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+  +  +
Sbjct: 3   EGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD + N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A IDN D+ +D LME ++ PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+  G RE I+VTEIPYQVNKA M++K A+++ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKAEFEEVKG-RECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +KR A  +++LN+L++YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YVIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA  N+DEV+ IIR S N + AR+ L++R           
Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R+E   +   I++  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + II++EL  +KD+    RR+ I     D+   D I  + +V+T+S+ GY+KR 
Sbjct: 456 AKKERRMSIIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G      R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q + +   +   +  DE   NN Y++ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDEVKAFVCTGDLKDEDYINNHYIIMATKKGQVKKTALEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+LS +  T E+ ++L  K G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKDNDELLSAKLTTGESQVMLALKSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V                                   ND+         
Sbjct: 695 ANDEDEVVGMVSV-----------------------------------NDT--------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  IL VSEKG+GKR+S  D+RI+NR GKG++   V++  + G LV++  V 
Sbjct: 711 --------ESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVSIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V +++
Sbjct: 761 DADDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVK 810


>gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
 gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
          Length = 822

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 557/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808


>gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
          Length = 852

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/901 (40%), Positives = 559/901 (62%), Gaps = 88/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 E 905
           E
Sbjct: 822 E 822


>gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
 gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
          Length = 822

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 559/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   + A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK + +  RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKYEDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+ G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINIESERS--DDAYIFFTTRAGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TKLG  VRF  S++R  + R++ GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMS-RSATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+   ++     D DE                                        
Sbjct: 693 EGDAVVGARVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R+GKG++  +++  N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRAGKGMKTANITDKN--GHLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    ++ ++V+   +  +E
Sbjct: 758 EDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLDENAKIVTFTTVAAAE 808



 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINIESERSDDA 609


>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii]
          Length = 857

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/887 (43%), Positives = 549/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE  S  ++ IV+ E+PYQVNKA ++E+IA+L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIESKSK-KDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N + A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q +AIL++RL RLTGL RD +  E   L I I +   IL
Sbjct: 414 ---------------FGLSAIQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  IIK+EL  +K++   PRRT I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEDRLNEIIKEELNEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P  + DE+      + F TK+G V+R  LS+F  I  
Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTSDFDEAKS----LTFFTKNGIVKRTSLSEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +  T +   L+  T LGQC+RF +   R   GR++ GVR    
Sbjct: 635 NGVRAIVLDDDDEIVTAKIATVDTKYLMVFTSLGQCIRFEVDKARE-QGRSTRGVR---- 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                    AI    D+D                 I  D E I S               
Sbjct: 690 ---------AIKFKIDSD-----------------IVVDAEIIDS--------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 ++Q ILTVSEKG GKRT+  ++R++NR+G G+ A  +S   + G ++    V+D
Sbjct: 709 ------EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV +  IR A R T GV+I +  KD++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAK 807


>gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
 gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
          Length = 822

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 558/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +++KG+GKRT + ++    R GKG++   +++ N  G+L  +  V  +
Sbjct: 709 ---------VLIITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAAE 808



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ I +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTIINVESERSDDA 609


>gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68]
 gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3]
 gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis]
 gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3]
          Length = 814

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/897 (41%), Positives = 564/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS  Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++                           +IS D E                    
Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6]
 gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6]
          Length = 822

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDESESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  S +R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSTVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++     D DE                                        
Sbjct: 693 DGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDESESIQTIINVESERSDDA 609


>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
 gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
          Length = 872

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/893 (42%), Positives = 548/893 (61%), Gaps = 56/893 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFKKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q   +  LL D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG VAVI NP+I    LM+ I GPDFPTGA ILG   IK AY TGRGSI +RGV+
Sbjct: 188 LGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGVGAIKEAYTTGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +IE    +   DRE I++TE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR G R+
Sbjct: 248 NIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+   L   L  F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILNLKQFLNVFLDFRIESIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+++LD ++ +IR + +  TA+ EL+            
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELIT----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 417 ---------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+L II+ E+  +K    TPRRT I     ++++ D I  E  ++ ++  GY+KR
Sbjct: 462 LARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ + AQ R  +G++   ++D+D +        H SVLFFS  G VY  K +++P+GS
Sbjct: 522 MPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++ +L+ F  I  
Sbjct: 582 RTSRGTPIVQLLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTELAAFSNIRA 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D++  V     E+ I++ ++LG  + F  +  ++   GR + GV+ + L
Sbjct: 639 NGLIAISLEEGDQLRWVRRARVEDSIIVGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD+++ M I+  A  D          ++ +      D ++I +   +++VE     E 
Sbjct: 699 KKGDELVGMDILPAAILDT---------LNTE----EPDIDDIETEDIETAVETTEVLET 745

Query: 790 CQELKLKE--------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            + L+  E         ++L ++  G+GKR     FR+ NR+G+G+ AT          L
Sbjct: 746 LENLEAVEVSSTASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKL 805

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  VN +++I++V+++G +IR  VN I I SR+  GV +    +D+ +  V
Sbjct: 806 ATLGIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGV 858


>gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 949

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/853 (43%), Positives = 549/853 (64%), Gaps = 54/853 (6%)

Query: 7   SSDEEEEKGI-------TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           +SD+ E+KGI       TS+ I +EM+ SY+ YA++VI+GRA+PD RDG KPVHRR+LF 
Sbjct: 57  ASDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFA 116

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G+  +K Y K AR+ G+V+GKYHPHG+ A+YD + RM QD+SLR  LI+GQGNFGS
Sbjct: 117 MKEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGS 176

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE R+ + A  +L D+ K+TV F PNYDGS +EP VL A+ PN+LVNG 
Sbjct: 177 IDGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGS 236

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HN+GEV+DG + +I+NPDI +  LM +I+GPDFPTGA ILG  GIK+
Sbjct: 237 TGIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGTAGIKS 296

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG++ IR V+ I++   DR++I+VTE+PYQVNKA M+E IA+LVREK I+ I+DL
Sbjct: 297 AYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISDL 356

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIEL RG +  V+LNQLY++T +++ F V  +AL   KP+   L  +L+
Sbjct: 357 RDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVDGKPKELNLKELLE 416

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ +R E++ +RT Y L K+ +RAH+L GL IA+ N+DEVV +I+ S N + A++ LM+
Sbjct: 417 IYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLME 476

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E+Q++AIL++RL RLTGL    +  EL  
Sbjct: 477 --------------------------NFALDEIQSKAILDMRLQRLTGLETKKVLEELEG 510

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   I+ S      II+ ELL +K++    RRT+I++   ++ +ED I  E++V
Sbjct: 511 LVKLIGELNKIIESDELKYEIIRNELLELKEKYGDARRTKIMQAASEVREEDLIHEEEVV 570

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+++ GY+KR+PL  Y  Q RGG+G  G+ M++EDFV +LFI STH  +LFF++LG +Y
Sbjct: 571 VTITNGGYIKRIPLKTYTMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRLY 630

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            EKV+ +P GS Q+RGKA++N+L L  GE I  ++P  E +    N Y++ AT+ G +++
Sbjct: 631 WEKVYEIPEGSRQSRGKAIVNLLELKGGETINAMIPVKEFDK---NHYLLMATREGTIKK 687

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F    ++G IA+ LD  DE++ V     + ++L+ +K G+ +RF    +R   GR
Sbjct: 688 TPLSEFKNPRKAGIIAVTLDEDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPM-GR 746

Query: 720 NSVGVRGISL-AKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEE 771
            + GVRG++L    D+V+S+ IV          +  + +R  Y ++  A RR   G    
Sbjct: 747 TARGVRGMALDGPEDEVVSLDIVDETTTLLTVTENGFGKRTEYSQY-PAHRRGGKGVITI 805

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           IT+ +N     G +S  R + +   ++ I T S  G   R  + D  I  R+ +G+R  +
Sbjct: 806 ITNERN-----GPVS--RVRSVADDDELIFT-SADGIIIRIPAKDISIQGRNTQGVRIIN 857

Query: 832 VSKINEIGALVAV 844
           +   +++  +  +
Sbjct: 858 LKSGDKVAGIARI 870


>gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 842

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/867 (42%), Positives = 540/867 (62%), Gaps = 67/867 (7%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           +HRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L+
Sbjct: 1   MHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGD  AA RYTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR 
Sbjct: 61  DGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           PN+L+NG  GIAVGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I
Sbjct: 121 PNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGII 180

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
            G +G++  Y TGRG +V+R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV E
Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTE 240

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           KR+  I+D+RDESD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P 
Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPR 300

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L+ F+  R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P
Sbjct: 301 LLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTP 360

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTR 455
             A++ELM RSW++  ++D++   +  +               + +  DG   LS+ Q +
Sbjct: 361 PIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQ 420

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            IL++RL RLTGL +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    
Sbjct: 421 EILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDE 480

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RR++I     +++ ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D
Sbjct: 481 RRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDD 540

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           ++  LF+ +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P
Sbjct: 541 WIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILP 600

Query: 636 FPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
             + DE      +V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++
Sbjct: 601 VKQFDEQH----FVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQH 656

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           D++L +  G+ VRF  + +R   GR + GVRG++L +G QVI+M +   A A+       
Sbjct: 657 DVMLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLV---APAE------- 705

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                             T+ + + +V G+               +LT +E G+GKRT  
Sbjct: 706 ------------------TAGEGEQAVAGS---------------VLTATENGYGKRTPI 732

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            ++    R  KG+ A   S+ N  G +VA   V   D+I+L++  G LIR  V+EIR   
Sbjct: 733 SEYTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMG 790

Query: 875 RATKGVVIFSTAKDERVVSVERIRESE 901
           RAT+GV + +  +  ++  ++R+ ES+
Sbjct: 791 RATQGVTLIAVGEGNKLSGLQRVVESD 817


>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 812

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/886 (43%), Positives = 566/886 (63%), Gaps = 93/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I D +  SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +  Y K A
Sbjct: 3   VIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  LI+GQGNFGS+DGD  AA RYTE RL
Sbjct: 63  RIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEARL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  V +IDN + +L+ +++ I+GPDFPTG +I GR GI  AY +GRGSI IR   H
Sbjct: 183 GELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILEAYKSGRGSIKIRAKHH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G+RE IV+ E+PYQVNKA ++EKI+ELV++K I  I+++RDESDR+G RVVIELK
Sbjct: 243 IEH-RGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +++ILN LY++T +Q  F +NM+A+   +P+ F L+ IL  F+ FR+ VV+RRT Y
Sbjct: 302 KDAMSEIILNNLYKHTQMQVSFGINMLAILDKEPKLFNLMEILNTFIKFRKTVVIRRTIY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+  L++R               
Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ +AIL+++L+RLT L  + ++ E + L  +I     IL   S
Sbjct: 407 -----------FDLSEVQAQAILDMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEES 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK+E L ++ +    R+T IV+   D++ ED I  EDMVVT++H GYVKRVPL  
Sbjct: 456 VLNNVIKEEFLEIRKKYANERKTEIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKT 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+  +   + DF+ D +I   H +++  ++ G ++  KV+++P GS  ++G
Sbjct: 516 YERQNRGGKGKKALTTYENDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSKG 575

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L++ E+I TI+    F E++S      + F TK+G V+R  LS+F  I  +G
Sbjct: 576 KAIVNLINLDKDEKIQTIIKTSDFDENKS------LAFFTKNGIVKRTNLSEFKNIRSTG 629

Query: 673 KIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ +D  DE+++ +   +++  L + TK G  +RFP+ A+R   GRN+ GV+GI+   
Sbjct: 630 VRAIVIDKDDELVTAKIVKEDDKYLFIVTKKGMAIRFPVDAVREM-GRNARGVKGITFKI 688

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+                                              G +S    
Sbjct: 689 EGDEVV----------------------------------------------GALS---- 698

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L+ ++Q IL+VSEKGFGKRT +  +R++NR GKG+ A  ++  N+ G LV V    +N
Sbjct: 699 --LRDEKQEILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEEN 754

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             ++L++ KG +IRV ++ I    + T+GV +     D++VVSV +
Sbjct: 755 HDLMLLTSKGKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAK 800


>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 860

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/887 (42%), Positives = 547/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V + D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE +   ++ +V+ E+PYQVNKA ++E IA L ++K+I  IA++RDESDR G RVV
Sbjct: 246 AKHHIE-SKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L + I E   IL
Sbjct: 414 ---------------FGLSSIQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  IIK+EL  +K++  TPR+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIKEELNEIKEKFSTPRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P P+ DES      +VF T++G ++R  L++F  I  
Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTPDFDESKS----LVFFTRNGVIKRTSLNEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDTDEIVTAKIADVQTQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 I   IV+ AD   +E                                       
Sbjct: 694 K-----IDTDIVVDADVIDNE--------------------------------------- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  EQ ILTVSEKG GKRT+  ++R++NR+G G+ A  +S   + G +V    V+D
Sbjct: 710 -------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV VN IR A R T GV+I +   +++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807


>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 829

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/886 (43%), Positives = 550/886 (62%), Gaps = 94/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY K A
Sbjct: 9   IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP H +
Sbjct: 129 TQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHRV 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  V +IDNP  +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R  +H
Sbjct: 189 DEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRAKTH 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  I+++RDESDR+G RVVIELK
Sbjct: 249 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RRT +
Sbjct: 308 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+ + +N            
Sbjct: 368 ELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ-FN------------ 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLTGL R+ I NE   L  EI+    IL S  
Sbjct: 415 -------------LSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSED 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP+  
Sbjct: 462 LLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  A G
Sbjct: 522 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIG 581

Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L   E+I    T   F ED+S      + F TK+G ++R  LS+F  I   G
Sbjct: 582 KAVVNLINLAPDEKIMATITTKDFNEDKS------IAFFTKNGIIKRTNLSEFKNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +  +     IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                        S + EE                   
Sbjct: 695 PKDYVIGATVV------------------------SNENEE------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 712 ---------ILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVN-VDDDKVVSIAR 805


>gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
 gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
          Length = 867

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/892 (41%), Positives = 545/892 (61%), Gaps = 87/892 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  ILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGS+DGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 SKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC A IDNPDIDLD LM+ I+ PDFPTGA I G  G++ AY TGRG IV+R  + 
Sbjct: 192 SEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRIVMRAKAE 251

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE  SG+  ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  DES RQG R+VI++
Sbjct: 252 IE--SGESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDV 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTK
Sbjct: 310 KRDANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTK 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L QR              
Sbjct: 370 YDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR-------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E+Q++AI+++RL++LTGL  D +  E   L  +I     IL   
Sbjct: 416 ------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYLQQILDDP 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
                ++K EL  VK++    RRT I     +   ED    + +V+TVSH+GY+KR PLS
Sbjct: 464 ELCKKVMKDELNEVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLS 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R Q RGG G      R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++
Sbjct: 524 EFREQARGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSK 583

Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G+A+ N+L++   + I  I+      DES  N+ YV+FATK+G V++  L  + +   +G
Sbjct: 584 GRAIQNMLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVKKTSLEAYSRPRANG 643

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR + GVRG+ L  G
Sbjct: 644 VIAINIVDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTM-GRTATGVRGMRLDGG 702

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V  A++                                             
Sbjct: 703 DDEVVGMVTVNEAES--------------------------------------------- 717

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 + ++ VSE+G+GKR+   D+R++NR GKG++   +++  + G LV++  V D +
Sbjct: 718 ------ESVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVSIKNVTDEN 769

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
            +++++  G +IR+ V ++R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 770 DLMIINKSGVVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821


>gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
 gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
          Length = 895

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/900 (41%), Positives = 546/900 (60%), Gaps = 83/900 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VS+ +EM+ SYL+Y+++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WNK Y K ARI 
Sbjct: 11  VSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNKPYKKSARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL+K 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMRYTEIRLEKI 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H +L DL K+TVDF PNYDGS  EP +L  + P +L+NG  GIAVGMATNIP HNL EV
Sbjct: 131 SHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATNIPPHNLSEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGC+  + NPD  +D L+E I  PDFPTG +I G +G++  Y TGRG +++R  +HIE 
Sbjct: 191 IDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIYGYSGVREGYRTGRGRVIMRAKTHIED 250

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G+R+ I++ EIPYQVNK  + EKIA+LV EKRI  I+D+RDESD+ G R+VIELKRG
Sbjct: 251 FEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGMRLVIELKRG 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             ADV+LN L++ T LQ  F +N+VAL   +P+   L  ++  F+  R EV+ RRT + L
Sbjct: 311 EVADVVLNNLFKLTQLQDTFGMNLVALVNGQPKLLNLKELVVYFLQHRREVITRRTVFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD- 436
            KAR+  H L GLA+A+AN+DE ++II+ S +P+ A   LM R W++S +K L+  +D+ 
Sbjct: 371 RKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVKSLLSRVDED 430

Query: 437 ---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                            Y + +DG  YLS  QTR IL + L RLTGL ++ I +   +  
Sbjct: 431 KALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEKIISSYEAAM 490

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDE--LDTPRRTRIVEGLLDMEDEDCIVREDMV 539
             I + LDILS   R+  II +EL+++K+E  +   RR++I    ++ E ED I   DMV
Sbjct: 491 DAITDLLDILSKPERITAIIGEELIAIKNEYTIKDARRSQIEYNAVEFETEDLITPMDMV 550

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S+ GY+K  PLS Y+AQ RGGKG+    M+D DFV  LFI +TH  VL FSSLG ++
Sbjct: 551 VTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVLCFSSLGRLH 610

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGN 656
           + KVW +P G   ++G+ ++N+  L + E+IT ++P   F +D+      ++  AT  G 
Sbjct: 611 RLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFSDDQ------FIFLATAKGV 664

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  LS +    +   IA+ LD  D ++  E     +DI+L +  G+ VRF  S++R  
Sbjct: 665 VKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDESSVRA- 723

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GV G+ L +G  +IS+ +  + +A       Y+  ++A        T  +   +
Sbjct: 724 TGRSSRGVLGMRLEEGQSIISLIVSKNENA-------YV--LTATENGYGKRTPVVEYTR 774

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           +    +G I+                               + S R+GK + A  V + +
Sbjct: 775 HGRGTKGMIA------------------------------IQTSERNGKVVAAVLVDESD 804

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           E               I+L++  G ++R  V  IR   RAT+GV +     D ++  V+R
Sbjct: 805 E---------------IMLITTDGIVVRTKVAPIRELGRATQGVKLIRIDNDTKLKGVQR 849


>gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169]
 gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1]
          Length = 888

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/917 (41%), Positives = 563/917 (61%), Gaps = 62/917 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A
Sbjct: 5   VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++
Sbjct: 65  RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG  H
Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244

Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G RV
Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EVV 
Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +  +
Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424

Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
           +D          +ID     + Y +  + T Y LS  Q  AIL+++L RLTGL +D +  
Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I  
Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F++ 
Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653
           G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  +  DE+S    +V FAT 
Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG           M + L    D +E +            +S     + 
Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLTTIDEEELLDEDGDEVGDDFAVS----RVV 764

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           SL                 +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881


>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
 gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
          Length = 824

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/891 (43%), Positives = 555/891 (62%), Gaps = 87/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y K A
Sbjct: 19  IVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE R+
Sbjct: 79  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP HN+
Sbjct: 139 SKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G + +IDNPD  +D LM +I+GPDFPT  +ILG   I+ AY TGRG I +R  +H
Sbjct: 199 VEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRARAH 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VIEL+
Sbjct: 259 IETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIELR 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L+ ++  +E V+ RRT+Y
Sbjct: 319 RDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQEMVITRRTRY 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM                 
Sbjct: 379 ELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM----------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                   DG   L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+ R 
Sbjct: 422 --------DG-FKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRM 472

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+PL  
Sbjct: 473 KVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDT 532

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P    QA+G
Sbjct: 533 YRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKG 592

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A+IN+L++   ERIT ++   E  +   + Y+   TKHG V++  LS+F  I R+G  A
Sbjct: 593 TAIINLLAVENDERITAVIQVKEFRA---DRYLFLGTKHGVVKKTPLSEFGSIRRNGLKA 649

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++ V+    EN I+L T+ G+ + FP   +R   GR + GVRGI+LA GD+V
Sbjct: 650 VNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEEGVRSM-GRVARGVRGITLADGDEV 708

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++M +                                  L++DS V              
Sbjct: 709 VAMDV----------------------------------LRSDSEV-------------- 720

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V +N +++L
Sbjct: 721 -----LTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQELML 773

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++ +G +IR  V+EI + SR T+GV + + A+ +RV S+  +  + IVD A
Sbjct: 774 ITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATM--NRIVDSA 822


>gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A
 gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 825

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/885 (42%), Positives = 562/885 (63%), Gaps = 70/885 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  E+++SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +   WNK Y K A
Sbjct: 8   IVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD++ RMAQ++SLR +LI+GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL DL K+TV+F PNYDG+   P +L ++ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VS 254
            EV+DGC+A I + +I L  L++ I GPDFPT  +I G+ GI+ AY TG+G I IR    
Sbjct: 188 NEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKIYIRARNK 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             +     +E I+  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+V+E+
Sbjct: 248 IEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +++ILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ REE+V RR+ 
Sbjct: 308 KKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREEIVTRRSI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+K   R+H+L GL+IA+ N++ ++ +I+ + +   A+  +++++W          + 
Sbjct: 368 FELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTW----------IY 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +S      D   + +E Q +AIL+LRL +LT L ++ +  E + L  +IKE   IL SR
Sbjct: 418 KNSEKINQKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSR 477

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+  +I+ EL+S+K+     RRT I E   D+  ED I +ED+VVT+SH GYVK  PLS
Sbjct: 478 DRMREVIRDELVSIKNNFGDQRRTEITENNPDISIEDLINQEDVVVTLSHSGYVKYQPLS 537

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQ+RGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  A+
Sbjct: 538 DYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHAK 597

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ ++N+L L+  ERIT I+P  E +   +NL +  AT  G V+++ L +F +   +G I
Sbjct: 598 GRPIVNLLPLSNKERITAILPIHEFK---DNLNIFMATAQGIVKKSSLKEFKKPRIAGII 654

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L + DE++ V     +N+I+L T+ G+ V+F  +++R   GR + GVRGI ++K D+
Sbjct: 655 AINLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTM-GRTASGVRGIKISKNDK 713

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+                                 I   K +S               
Sbjct: 714 VVSL---------------------------------IVPYKKES--------------- 725

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL  +  G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI+
Sbjct: 726 -----ILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKN--GKIIGAIQVVEKDQIM 778

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++++ GTL+R+  +EI +  R T+GV++  T+K+E+VV+++RI E
Sbjct: 779 MITNAGTLVRIRASEIGVLKRNTQGVILIRTSKNEKVVALQRIVE 823


>gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
 gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
          Length = 854

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/881 (41%), Positives = 544/881 (61%), Gaps = 85/881 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF+ N+D + QEPVV+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG  I G +G+++AY TGRG +++
Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++IVV EIPY VNK  ++E IA LV EK+I  I+ + DESDR+G R+
Sbjct: 242 RAKAEIE-SHPTHDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R EV++
Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIQLFVEHRHEVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R          
Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FQLSEVQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +      +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LVNEELCKKVIKDELIEVKEKYGDKRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIDADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M                                                
Sbjct: 694 LDEDGQDEVIGMI----------------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
              C +  LKE  I+ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  
Sbjct: 707 ---CIKDPLKET-IMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEK 801


>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
 gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
          Length = 843

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/890 (43%), Positives = 558/890 (62%), Gaps = 91/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  +G+  V I + +Q SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 6   ENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAA 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGS+DGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  LL D+ KDTVDF PNYD S +EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L E++D  +  ++NP+ +++ LM++++GPDFPTG VI G+ GI +AY+TGRG I +
Sbjct: 186 PPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIFGKKGIIDAYSTGRGRIKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+   +RE IV+ E+PYQVNK+ ++E IA+LVR+K+I  I+++RDESDR+G RV
Sbjct: 246 RAKTHIEQHK-NREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A +D++LN L++ T +Q+ F + M+A+   +P+ FTL  +L  F+  R+ V++
Sbjct: 305 VIELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKEPKVFTLPELLDLFINHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IAV N+DEV++IIR S +   AR  LM R          
Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSR---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAILE+RL RLTGL  + I +EL  L   I+    I
Sbjct: 415 ----------------FDLSEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLESI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + +  IIK+ELL VK+     RRT IV+   D++ ED I  E MVVT++H GY+KR
Sbjct: 459 LKSETMIEEIIKKELLEVKEAFSDERRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP+  Y  QRRGGKG++ V   ++DF+   FI +TH +++F +  G +Y  KV+R+P GS
Sbjct: 519 VPVKQYEKQRRGGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+GKA++N+++L++ E+I  I+P   F ED+S      +VF T++G V+R  LS++  
Sbjct: 579 RTAKGKAVVNLINLDKDEKIKAIIPTQDFNEDKS------LVFFTRNGIVKRTNLSEYSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I   G  A+ LD  DE++  +    +   + + TK G C+RFP+S +R   GR + GV  
Sbjct: 633 IRSVGVRAINLDENDELIDAKIIKPDTKWLFVVTKKGMCIRFPVSDVREI-GRVARGV-- 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                       AI    D DY   +C                   T+++N+        
Sbjct: 690 -----------TAIKFKIDGDY---VCGA-----------------TTIENE-------- 710

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  IL VSEKG GKRT + ++R  +R+GKG+ A  ++   + G +V V  
Sbjct: 711 ----------EDEILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTP--KTGDVVGVVF 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V ++  ++ ++  G +IRV +  IR A RAT GV I +    +RVVS+ +
Sbjct: 759 VEEDKDLMCLTSAGKMIRVDMQSIRRAGRATSGVKIVNVEGKDRVVSIAK 808


>gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 881

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/878 (43%), Positives = 541/878 (61%), Gaps = 51/878 (5%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL DL KDTVD+
Sbjct: 61  YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+ EVV+ C+A  DNP+I +
Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-TSGDREQIVVTEIP 272
           + LME I GPDFPTG +I G++GI +AY TG+G + IRG  H E+     R  IV TEIP
Sbjct: 181 EGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEIP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+LKRG +A+V++N L+  T 
Sbjct: 241 YQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNTQ 300

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT + L KAR+R H+L GL +
Sbjct: 301 LENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGLTV 360

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI------------DDSSYT 440
           A+AN+DE++  I+ S NP  AR  L+   W    +  L++              +D +  
Sbjct: 361 ALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRP 420

Query: 441 IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            G SD    LS  Q  AILELRL RLTGL +D +  E   +  +I E   IL+  + L+G
Sbjct: 421 FGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLLMG 480

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I++EL  V  +    RRT IVE  +D   ED I  E +V+TVS  GY K  PLS Y+AQ
Sbjct: 481 VIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQ 540

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ KV+ +P  S  A+G+ ++
Sbjct: 541 RRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIV 600

Query: 620 NILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           N+L L+  E +T I+P   FPE      N YV  AT  G V+R +L  F  I  +G  A+
Sbjct: 601 NLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVKRVELEQFANIRSNGLRAI 654

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +L+  D ++ V        I+L +  G+ +RF  + +R   GR + GVRG+ ++     +
Sbjct: 655 ELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GRTAKGVRGMRVSFASSTL 713

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S       DAD +         SA   L+S     I SL         +  E  +     
Sbjct: 714 S-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV--------VVPETGE----- 751

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L  S  G+GKRT   DF    R GKG+ A   S+ N  G LV    +++  +++L+
Sbjct: 752 ---VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GELVGAVSIDETKELLLI 806

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           SD GTL+R    E+ +  R  +GV +   +++E +V V
Sbjct: 807 SDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 844


>gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
 gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
          Length = 829

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/886 (43%), Positives = 550/886 (62%), Gaps = 94/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY K A
Sbjct: 9   IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 69  RIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP H +
Sbjct: 129 TQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHRV 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  V +IDNP  +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R  +H
Sbjct: 189 DEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRAKTH 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  I+++RDESDR+G RVVIELK
Sbjct: 249 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RRT +
Sbjct: 308 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+ + +N            
Sbjct: 368 ELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ-FN------------ 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLTGL R+ I NE   L  EI+    IL S  
Sbjct: 415 -------------LSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSED 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP+  
Sbjct: 462 LLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  A G
Sbjct: 522 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIG 581

Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L   E+I    T   F ED+S      + F TK+G ++R  LS+F  I   G
Sbjct: 582 KAVVNLINLAPDEKIMATITTKDFNEDKS------IAFFTKNGIIKRTNLSEFKNIRNVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +  +     IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                        S + EE                   
Sbjct: 695 PKDYVIGATVV------------------------SNENEE------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 712 ---------ILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVN-VDDDKVVSIAR 805


>gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1]
          Length = 872

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/901 (42%), Positives = 557/901 (61%), Gaps = 60/901 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A
Sbjct: 5   VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++
Sbjct: 65  RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG  H
Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244

Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G RV
Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EVV 
Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +  +
Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424

Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
           +D          +ID     + Y +  + T Y LS  Q  AIL+++L RLTGL +D +  
Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I  
Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F++ 
Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653
           G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  +  DE+S    +V FAT 
Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG           M + L A  D +E +            +S     + 
Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATTDEEELLDEDGDEVGDDFAVS----RVV 764

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           SL                 +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 V 894
           +
Sbjct: 867 M 867



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 36/240 (15%)

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D++DE+  V      T S  G VKRV LS +   R GG     + + + D +  + I   
Sbjct: 647 DLKDENSFV---FFATAS--GTVKRVALSQFANLRAGG--LRAIDLAEGDTLIGVAITDG 699

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARG--KALINILSLNQGE--------------- 628
              ++ FS+ G   + K   +   S  A+G     +N+L+    E               
Sbjct: 700 EQEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFA 759

Query: 629 --RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-E 683
             R+ +++  P+         ++ A ++G  +R  + D+    R GK  IA+K   R+ +
Sbjct: 760 VSRVVSLVVAPKQGE------ILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQ 813

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++     T E D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H
Sbjct: 814 LVKAIAVTGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEH 872


>gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
 gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
          Length = 910

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/896 (42%), Positives = 542/896 (60%), Gaps = 51/896 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+VI+N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++  
Sbjct: 366 YELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G  G +Y LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           +V+ +P  S  A+G+ ++N+L L   E IT I+P   FPE      N YV  AT  G V+
Sbjct: 606 RVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L  F  +  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ ++     I +          D  +             S     I SL   
Sbjct: 719 RTAKGVRGMRVSFASNTIDVE---------DAEVENDDSDDNDDSSDSNVVSRIVSLV-- 767

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +  E  +        +L     G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 768 ------VVPETGE--------VLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN-- 811

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G L++   +++  +++L+SD GTL+R    E+    R  +GV +   +  E +V V
Sbjct: 812 GELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGV 867


>gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1]
 gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4]
          Length = 874

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/899 (41%), Positives = 545/899 (60%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   IHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+GKDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +IDN      D D++ L+ I++GPDFPTG +ILG  GI  AY TGRG + +
Sbjct: 189 REVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGTAGINEAYRTGRGKVRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R ++ IE     + +IVVTE+PY VNKA ++EKIAELVR+K++  I DLRDESDRQG R+
Sbjct: 249 RAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDESDRQGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +V+LN LY++T LQ  F V M+AL   +P+   L  +LK ++  +EEVV 
Sbjct: 309 CIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALVNNEPKVLNLYDMLKYYLIHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N + A+  LM+R          
Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q++AI+++RL  LTGL R+ +  E   L   I E   I
Sbjct: 419 ----------------FSLSDAQSQAIVDMRLRALTGLEREKLEAEYAELMDRIAELRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ + +LLG+I+ E+L + D+    RRT I     D+  ED I   + V+T++ LGY+KR
Sbjct: 463 LADKKKLLGVIRTEILLIADKYGDDRRTSIGFDEYDISMEDLIPVTNTVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + L  +RAQ RGGKG  G+   D+D++ +L + ++H  ++FF++ G VY+ K + +P  S
Sbjct: 523 MSLDNFRAQNRGGKGIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKAYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L  GE+IT ++P  E        ++  ATK G V++  ++D+  + +
Sbjct: 583 RTARGTAIVNLLQLQPGEKITAVIPIREYTEGH---FLFMATKKGIVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+      D+ L TK GQC+RF  + +R   GR S+GV G++L 
Sbjct: 640 TGLAAISLREDDELIEVKKTDNNQDVFLVTKYGQCIRFKETDVRK-TGRTSMGVIGMNLT 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+VI M +    DA                                            
Sbjct: 699 DGDEVIGMQMQSQGDA-------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ VSEKG GK T   +F   NR GKG++   +++  + G +V V  VN +
Sbjct: 715 ---------LMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITE--KTGNIVGVKAVNQD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAES 908
           ++++L++ +G +IR+ V++  +  R T GV + +  ++  V S+ ++RE + ++D A++
Sbjct: 764 NELMLITTEGIIIRIKVSDTTLLGRITSGVKLINLDENVTVASIAKVREDKSLIDNADT 822


>gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 929

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/915 (41%), Positives = 561/915 (61%), Gaps = 34/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDDTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D P+ D+D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI +LVR+K +  IAD
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLID---------DSSYTIGSDGT-MYLSEVQTRAILELRLARLTGL 468
            R+W +S ++D++   D              +G  G   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL  +K      R++ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRKSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++ V      +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFSNLGK- 713

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRL 764
                 AIR        G         +  +S  +    D +  D      KH       
Sbjct: 714 ------AIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGR 767

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            SG    +   +N   V        C++  L+   +LT +  G+GKRT   D+   N+ G
Sbjct: 768 GSGGLRGMRLPENGRIVSLITFAPECEQGDLQ---VLTATANGYGKRTPIADYSRKNKGG 824

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +G  A +  + N  G LVA   V ++D ++L++  G LIR  V++IR   RA  GV + +
Sbjct: 825 QGNIAINTGERN--GDLVAATLVGESDDLMLITSGGVLIRTKVDQIRETGRAAAGVKLIN 882

Query: 885 TAKDERVVSVERIRE 899
             + E++VS+ER+ E
Sbjct: 883 LDEGEQLVSLERVAE 897



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 11/133 (8%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--R 572
           P   RIV  L+    E C   +  V+T +  GY KR P++ Y  + +GG+G   +    R
Sbjct: 778 PENGRIVS-LITFAPE-CEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGER 835

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D V    +V     ++  +S G + + KV ++       R  A + +++L++GE++ +
Sbjct: 836 NGDLVA-ATLVGESDDLMLITSGGVLIRTKVDQI---RETGRAAAGVKLINLDEGEQLVS 891

Query: 633 ---IMPFPEDESS 642
              +   PED ++
Sbjct: 892 LERVAEEPEDTAA 904


>gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
 gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
          Length = 866

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/741 (48%), Positives = 496/741 (66%), Gaps = 23/741 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+N D+ +D LME I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGGIINGRAGILQAYRTGRGRIYVRAK 245

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            H+E  + SG +  +++TEIPYQ+NKA ++EKIAELV++K+I  I +LRDESD+ G R+V
Sbjct: 246 HHVEEDQKSG-KASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RG   DV++N L+  T ++S+F +NMVAL   +P+   L   L+ F+  R EVV R
Sbjct: 305 IELRRGEMPDVVINNLFAQTQMESVFGINMVALVDGQPKILDLKTALECFIRHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT YLL KAR+R H+L GLA+A+AN+D V+ +I+ SP P  A+  L+  +W   D+  ++
Sbjct: 365 RTVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQML 424

Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +   + +         Y +  +G   LS  Q +AILELRL RLTGL  + +  E   L  
Sbjct: 425 ERAGEDACRPEDLEEQYGL-REGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLE 483

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E L IL S  RL+ +I++EL ++ +E    RRT I     D+   D I  EDMVVT+
Sbjct: 484 RIAELLKILGSHERLMEVIREELEAILEEYGDERRTEITASRKDLTVADLITEEDMVVTI 543

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL+ Y++QRRGGKG+S   ++DEDF+  L I +TH ++L F+  G VY  +
Sbjct: 544 SHGGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVYWLR 603

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
           V+ +P+ S  ARG+ ++NIL L++GERI+TI+P   + ED+      ++  AT  G V++
Sbjct: 604 VFEIPVASRTARGRPIVNILPLDEGERISTILPVGGYEEDK------FIFMATASGTVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L++F +   SG IA+ L   D ++       E+D++L T  G+ +RF    +R   GR
Sbjct: 658 TALTNFSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPM-GR 716

Query: 720 NSVGVRGISLAKGDQVISMAI 740
            + GVRG+ +  G +VIS+ I
Sbjct: 717 TARGVRGVKMDDGVKVISLII 737



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT SE G+GK+T+  DF +  R G+G+ A   S  N  G+L     V D D ++L+SD+
Sbjct: 744 ILTASENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRN--GSLAGAVQVFDGDDVMLISDQ 801

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           GTL+R   +EI    R T+GV +   A DER+VSV RI E E
Sbjct: 802 GTLVRTGGDEISELGRNTQGVTLIRVADDERLVSVARIEEPE 843



 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EIT+ + D +V   I+EE           ++T+S  G+ K     D++   R GKG  A 
Sbjct: 520 EITASRKDLTVADLITEE---------DMVVTISHGGYAKTQPLTDYQSQRRGGKGKSAA 570

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887
            +   + I  L+     N +D I+  +D+G +  + V EI +ASR  +G   V I    +
Sbjct: 571 AIKDEDFIEHLLI---ANTHDTILCFTDRGKVYWLRVFEIPVASRTARGRPIVNILPLDE 627

Query: 888 DERVVSV 894
            ER+ ++
Sbjct: 628 GERISTI 634


>gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 718

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/716 (49%), Positives = 491/716 (68%), Gaps = 15/716 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  + 
Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE  + + RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 IETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+  +W   ++  +++  
Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAMLERA 427

Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            D +         Y I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R   GR +
Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTA 718


>gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
 gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
          Length = 822

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGVVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++ + D                                             
Sbjct: 693 EGDTVVGASVITNQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T  EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 708 ------EVLIIT--EKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/895 (41%), Positives = 553/895 (61%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y K A
Sbjct: 7   IVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE ++
Sbjct: 67  RIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAKM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 127 TKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G    IDNP+I +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +++R  + 
Sbjct: 187 TEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVILRSRAE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+VIELK
Sbjct: 247 IEEDKG-KSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRIVIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LNQLY++T +Q  F + M+AL   +P+  +L  +L+ ++ F+EEV+ RRT++
Sbjct: 306 RDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEEVITRRTQF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ ++DEV+R+IR S     A+  LM +               
Sbjct: 366 DLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFG------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q  AIL+++L RLTGL R+ I  E   L   +K    ILS +S
Sbjct: 413 -------------LSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKS 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL IIK EL  +K +    R++ I+  EG  D++ ED I  +D+V+T++H GY+KR+P+
Sbjct: 460 LLLKIIKDELNEIKTKYGDERKSEIIQDEGN-DIDIEDLIEEKDVVITLTHAGYIKRLPV 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y AQ+RGG+G   +  +++DFV  +   STH ++LFF++LG VY+ K +++P     A
Sbjct: 519 ETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTA 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  LIN++ L++ E+I  ++   E +    + +++  TK G +++  L  +  I ++G 
Sbjct: 579 KGMNLINLIPLDKEEKIQNVIYLKEFKE---DTFLIMGTKKGLIKKTSLDKYASIRKNGL 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE++SV   T + +++  TK G  +RF  + +R   GR + GV+ I+L + D
Sbjct: 636 NAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPM-GRTATGVKAITLREDD 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM +                                             SE R    
Sbjct: 695 EVVSMEVA--------------------------------------------SENRD--- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L VSE G+GKRT    + +  R GKG+    +S+  + G L+    V D D++
Sbjct: 708 ------LLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISE--KTGLLIGARFVEDKDEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +L++D G  IR+ V++I   SR   GV +  T  +E+VV++ ++  SEI D+  +
Sbjct: 760 MLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISEIEDDCNN 814


>gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 557/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609


>gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 886

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/930 (40%), Positives = 560/930 (60%), Gaps = 122/930 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKP HRRIL+ M  +G+  +K + K A
Sbjct: 8   IKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKPHKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+YD + RMAQD+S R  L++G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+TV+F+ NYDGS +EP VL +R+PN+LVNG  GIAVGMATNIP H L
Sbjct: 128 SKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +A+  NPDI +  LM+ I GPDFPT   ILGR+GI+ AY TGRGS+++R  + 
Sbjct: 188 GEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSLIVRAKAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+T  DRE+I+VTE+PYQVNKA ++EKIA+LVREK+I  I DLRDESDR+G RVV+E++
Sbjct: 248 IEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRVVMEIR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A VILN LY+ TS+Q+ F VNM+A+   +P   TL  +L  ++  ++E+V RRT++
Sbjct: 308 RDANASVILNNLYKQTSMQTTFGVNMLAIVSGRPRTLTLKEMLYHYLEHQKEIVRRRTQF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  R H+L GL IA+ +LDEV++IIR +   + AR +LM+R               
Sbjct: 368 DLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q++AIL++RL RLTGL R+ I  E + +   I E   IL S  
Sbjct: 413 -----------FELSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRILESDE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LL +I+ EL  VK+  +  RRT I    ++ EDED I  +D+++T++  GY+KR+    
Sbjct: 462 VLLELIRTELEEVKERFNDQRRTEIRMDHIEFEDEDLIPEKDIIITLTSSGYIKRLTTDS 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGG+G  G+   D D+VT L   STH ++LFF++ G VY+ + + +P  S  ++G
Sbjct: 522 YRAQRRGGRGVQGIGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMSRTSKG 581

Query: 616 KALINILSLNQGERITTIMPF----------------------------------PEDES 641
             +IN++ + + E++ T++P                                   PE+  
Sbjct: 582 VPIINLIQIERDEKVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEEPEEAL 641

Query: 642 SWNNLY------VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
               +       ++F T+ G V+R+ LS + +IN++G IA++L   DE+ SV   + E++
Sbjct: 642 DAEEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLASTEDE 701

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ +RFPI+ +R   GR + GV+ ++L+    VI M                 
Sbjct: 702 VFTVSNTGKAIRFPITNVRSM-GRGARGVKAMNLSADAIVIGM----------------- 743

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                               EL   EQ +L ++EKGFGKRT   
Sbjct: 744 ------------------------------------ELARDEQDVLVITEKGFGKRTPMT 767

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +FR  +R GKG+ A+ V+  + +G +VA+  V+ +D I+++++ G +IR     I    R
Sbjct: 768 EFRTQSRGGKGLIASKVT--DRVGQIVALRIVDVDDDIMIMTESGIVIRTDSQNISSVGR 825

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             +GV +    + +RV +V ++++ + V+E
Sbjct: 826 NAQGVKVIRIEEGDRVATVAKLKKEDAVEE 855



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 22/231 (9%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           M+DE     +  ++ ++  G VKR PLS Y   R    G   + + ++D +T + + ST 
Sbjct: 647 MQDE-----QKSLIFMTRKGRVKRSPLSAY--ARINKNGLIAIRLFEDDELTSVRLASTE 699

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNN 645
             V   S+ G     K  R PI + ++ G+    + ++N   + I   M    DE     
Sbjct: 700 DEVFTVSNTG-----KAIRFPITNVRSMGRGARGVKAMNLSADAIVIGMELARDEQD--- 751

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKL 702
             V+  T+ G  +R  +++F   +R GK  IA K+  R  +I+++     ++DI++ T+ 
Sbjct: 752 --VLVITEKGFGKRTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMIMTES 809

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           G  +R     I    GRN+ GV+ I + +GD+V ++A +   DA  +E I 
Sbjct: 810 GIVIRTDSQNISS-VGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEEGIV 859


>gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           agalactiae ATCC 13813]
          Length = 819

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/896 (42%), Positives = 568/896 (63%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +++ +  N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   GR + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  +                       R+++G                       
Sbjct: 693 EGDKVVGAS-----------------------RIVNG----------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  +N N
Sbjct: 707 -------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN--GPLARLVTINGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + I++++D G +IR  V  I    R+T GV +    ++ ++V+V  + E EI D++
Sbjct: 758 EDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV-EQEIEDKS 812


>gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7]
 gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7]
          Length = 819

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/891 (41%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE+GI  V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM  +G      Y
Sbjct: 2   EERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ DL +DT+DF PNYDG  QEP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL EV++  +AV  +PDI +  LME  I+GPDFPTG  ILG+T IK AY TG G IV+
Sbjct: 182 PHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYILGKTAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++ IVVTEIPY VNKA M+EK+++LVREK+I  I ++RDES+R G RV
Sbjct: 242 RAKTEIEE-KGSKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ TSLQ+ F  N +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMITLYLDHQEEVIK 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA DRAH+L GL  A+  +D ++ +IR S   E  +  LM+  +N SD    
Sbjct: 361 RRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLME-EFNMSD---- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                                 Q +AI E++L RL GL R  I ++LN L   I +  DI
Sbjct: 416 ---------------------KQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R RLL II  EL  +KD+    RRT I++G  D+EDED I  ED+++++++ GYVKR
Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYVKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ Q RGG+G  G+    +D V+ L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 515 MPVDTYKTQNRGGRGIKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L+L++ E++ +++     +   NN  Y+ F T  G V+R  +++F +I 
Sbjct: 575 RSAKGLPVVNLLNLDKEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++SV+     + IL+    G+ VRF  + +R   GR++ GV+GI++
Sbjct: 635 QSGKIAISLRDDDQLVSVKLTGGNDQILIAASNGKLVRFEETNVRPM-GRSASGVKGINV 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                                 D  E+  +  D   EG      
Sbjct: 694 --------------------------------------DGSEVIGMTTDK--EG------ 707

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   ++I+ V+E+G+GK +   ++R+SNR GKG++  + ++ N  G +VA+  VN 
Sbjct: 708 --------KYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERN--GQIVALRAVNG 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ +++++D G +IR+P+ +++ A RAT+GV +     + +V SVE + ++
Sbjct: 758 DEDLLIITDDGIMIRLPMEQVKTAGRATQGVRLIKVNAENKVSSVEVVEKA 808


>gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
 gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
          Length = 883

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/897 (41%), Positives = 552/897 (61%), Gaps = 84/897 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   + D   +  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG++++Y  + RMAQ+WSLR  L++GQGN+GS+
Sbjct: 61  LNLGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL K A  +L D+ KDT+D++ N+D + QEP VL A++PN+LVNG  
Sbjct: 121 DGDNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV++  +A ID+ +I++  LM+ ++GPDFPTG +I G  G + A
Sbjct: 181 GIAVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIYGFEGAREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG I++R  + IE  + DRE+I+VTEIPYQ+NK+ M+E+ AELV EK++  I+ +R
Sbjct: 241 SETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RVV E+KR A+A ++LN L++YTSLQ+ FSVN +AL   +P    L  ++  
Sbjct: 301 DESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGRPMLLNLKDLIHH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EV+VRRTK+ L +A  RAH+L GL IA+ +LDEV+++IR S  P+ AR  LM R
Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I+ E N L
Sbjct: 421 --------------------------FNLSDIQARAILDMTLRRLTGLERDKIKAEYNEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL+     + IIK EL+ +K++    RRT+IV    +M+ ED I  E++V+
Sbjct: 455 MKLIDYLKSILADEGLRMEIIKNELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR PL+ YR Q RGGKG  G   RD DF+  L I S H  +LFF+  G  + 
Sbjct: 515 TISHEGYIKRTPLTEYRTQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ NI+++ + E I   +     +D     N +++  T+ G ++
Sbjct: 575 LRVFEIPEGTRTSKGRAIQNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D +L     T  ++I++  K G+ +RF  S +R   G
Sbjct: 635 KTSLEAYSRPRANGINAININEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPM-G 693

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGI+LA + D+V+ M                          I+ D  E T    
Sbjct: 694 RTATGVRGITLAGENDEVVGM--------------------------IAIDDAETT---- 723

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKRT   D+R++NR GKG++  +V++  +
Sbjct: 724 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTE--K 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G LVA+  V D   +++++  G +IR+ +N++R   RAT+GV + S  +++ + SV
Sbjct: 760 TGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRATQGVRLISLKENDSIASV 816


>gi|169830227|ref|YP_001716209.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
 gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 812

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/882 (43%), Positives = 544/882 (61%), Gaps = 86/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  +K + K A
Sbjct: 8   IVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ K HPHG+AA+YDAL R+AQD++ R  L++G GNFGS+DGD  AA RYTE R+
Sbjct: 68  YVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +    +L D+ K+TVDF PNYDG+ +EPVVL +R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 ARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG V + D+PD +L+ LM  I GPDFPTG  I+GR GI  AY TGRGSI +RG + 
Sbjct: 188 KEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIMGRHGIVEAYRTGRGSIKMRGHAE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G R +IV+TE+PYQVNKA ++EKIA LVREK+I  I+DLRDESDR+G RVVIEL+
Sbjct: 248 FERV-GSRTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIELR 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  + ++ LN LY++T LQ  F V ++AL   +P+   L  IL  ++  + EV+ RR +Y
Sbjct: 307 REVNPEITLNLLYKHTQLQDNFGVILLALVDGQPQVLALKDILSHYLGHQREVITRRCRY 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L++A+ R H++ GL IA+A+LDEV++ IR S +   AR  LM                 
Sbjct: 367 ELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLM----------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RLT L RD + NE N L   I+    +L+   
Sbjct: 410 ---------AGFGLSEKQAQAILDMRLQRLTALERDKLENEFNDLVAAIERLEALLADEQ 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L ++K+ELL+V+D+   PRRT +V    D   ED I +ED V+ +++ GY+KR+P SV
Sbjct: 461 KILAVVKEELLAVRDKFADPRRTELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPSV 520

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGG+G +GV  + +DFV  LF+  TH  +LFF+  G VY+ KV+ +P    QARG
Sbjct: 521 YRSQRRGGRGIAGVETKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARG 580

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N++ +  GER+T ++P  E      + ++   T+ G V++  L +F    R G IA
Sbjct: 581 TAVVNLIPVANGERVTAVIPVTE---YSGDAFLFMVTRKGIVKKTVLQEFDSARRDGLIA 637

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++ V+    ++++LL T+ G  +RFP   +R   GR + GVRGISL +GD V
Sbjct: 638 LTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPM-GRTAHGVRGISLREGDMV 696

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + M IV     D D++                                            
Sbjct: 697 VGMDIV-----DPDDQ-------------------------------------------- 707

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L VSEKG+GK T   +FR+ +R G G+ A  VS  N  G LV++  V   ++I++
Sbjct: 708 ----LLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRN--GPLVSLSLVGRGEEILI 761

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VS  G LIR+ ++EI    R  +GV +   A  + VV+V  I
Sbjct: 762 VSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPGDAVVAVAWI 803



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 21/219 (9%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +  V+  G VK+  L  + + RR   G   + + + D + D+ I    + VL  +  G 
Sbjct: 609 FLFMVTRKGIVKKTVLQEFDSARR--DGLIALTLDEGDELVDVKITDGKSEVLLGTRNGM 666

Query: 598 VYKEKVWRLPIGS--PQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKH 654
           V      R P G   P  R    +  +SL +G+ +  + +  P+D+     L VV    +
Sbjct: 667 V-----IRFPEGQVRPMGRTAHGVRGISLREGDMVVGMDIVDPDDQ-----LLVVSEKGY 716

Query: 655 GNVRRNKLSDFIQINRSG--KIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPIS 711
           G V    + +F   +R G   IA ++  R+  ++S+    +  +IL+ +K G  +R  I 
Sbjct: 717 GKV--TPVKEFRVQSRGGFGLIAARVSGRNGPLVSLSLVGRGEEILIVSKSGILIRMKID 774

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            I  F GR + GVR + LA GD V+++A +L  D    E
Sbjct: 775 EIPQF-GRQAQGVRLMRLAPGDAVVAVAWILPEDPPQGE 812



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTS 588
           D +  +D ++ VS  GY K  P+  +R Q RGG G   + V  R+   V+ L +V     
Sbjct: 700 DIVDPDDQLLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVS-LSLVGRGEE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM-PFPED 639
           +L  S  G + + K+  +P    QA+G   + ++ L  G+ +  +    PED
Sbjct: 759 ILIVSKSGILIRMKIDEIPQFGRQAQG---VRLMRLAPGDAVVAVAWILPED 807


>gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
 gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
          Length = 833

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/889 (42%), Positives = 546/889 (61%), Gaps = 90/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDA-----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID+   + +      +++II+GPDFPTG +ILG  GI+ AY TGRG + +
Sbjct: 189 AEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTRGIEEAYRTGRGKVRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+V+E+PY VNKA ++EKIAELVR+K+I  I DL D+S+R+G RV
Sbjct: 249 RAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R A+A+VILNQLY++T LQ  F V M++L   +P    L+ +L  ++  +EEVV 
Sbjct: 309 CIELRRDANANVILNQLYKHTQLQDTFGVIMLSLINNEPRVMNLLDMLNYYLEHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM+R          
Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMERFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+VQ++AI+++RL  LTGL R+ + NE   L  +I E   I
Sbjct: 421 ------------------LSDVQSQAIVDMRLRALTGLEREKLENEYKELMEKIGELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E++ ++D+    RRT I     D+  ED I R+D+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEIIIIRDKYGDERRTSIGFDEFDISMEDLIPRQDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ RGGKG  G+   +ED+V +LF+ +TH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MSNDTFKAQHRGGKGIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKAYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A+IN+L L   E+IT ++P  E +      Y+  +TK G V++  ++D+  + +
Sbjct: 583 RTSRGTAIINLLQLMPEEKITAVIPIEEYKEGE---YLFMSTKKGLVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    E DI+L TK GQC+RF    +R   GR S+GVRG++LA
Sbjct: 640 TGLAAITLREEDELIEVKYTNNERDIILITKYGQCIRFNERDVRS-TGRTSMGVRGMNLA 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M                                                    
Sbjct: 699 DRDEVIGM---------------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +L  +   +L VSEKG GKRT   +F   NR GKG++   +++  + G +V V  V+ +
Sbjct: 707 -QLDSQGTHLLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITE--KTGNVVGVKAVDLD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D+I++++  G +IR+  + I    R T GV + +    E V S+ ++R+
Sbjct: 764 DEIMIINTGGIIIRMKCDNISSLGRVTSGVKLINLPDGETVASIAKVRK 812


>gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
 gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
          Length = 840

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/889 (41%), Positives = 551/889 (61%), Gaps = 85/889 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++G+     + K A
Sbjct: 7   LISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAHKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 67  RIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEARM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q+ +  +L D+ K+TVD + N+D +  EP VL  R P +L+NG  GIAVGMATN+P HNL
Sbjct: 127 QRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+G +A ID+ +I +D LME I+ PDFPTG +I G  G+K+A+ TGRG +V+R  + 
Sbjct: 187 TEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIYGYDGVKDAFHTGRGRVVMRAKAS 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G RE I+V+EIPYQVNKA M++K A+LV EK+I  IA++RDESDR G R+V  LK
Sbjct: 247 FEEVQG-RECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIVYILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++LN LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R EVVVRRT+Y
Sbjct: 306 RDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVRRTEY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KA +RAH+L GL IA  N+DEV+R+IR S N + AR  L++                
Sbjct: 366 LLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIE---------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q +AI+E+RL +LTGL +D +R E   L   I +  DIL+++ 
Sbjct: 410 ----------AFKLTEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIADYKDILANKE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + IIK+ELL V+ +    RR+ I     D+   D I  E +V+T+SH GY+KR  L+ 
Sbjct: 460 RRMNIIKEELLEVQRKYGDDRRSVIEYAGGDVSITDLIPDEQVVLTISHAGYIKRTSLTE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS  ++G
Sbjct: 520 YKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKG 579

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +   +G 
Sbjct: 580 RAIQNLINIEPDDKVMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPRTNGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
            A+ +   DE+L  +    ++ ++L  K G+ +RF  S  R   GRN+ GVRGI LA   
Sbjct: 640 NAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPM-GRNASGVRGIRLADDN 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M  +                                   ND   E          
Sbjct: 699 DEVVGMIAI-----------------------------------NDLESE---------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL VS+KG+GKR+S  D+RI+NR GKG++  +V++  + G LVA+  V D+D 
Sbjct: 714 -------ILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTE--KTGQLVAIKNVIDSDD 764

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++++  G  IR+ V+ +R+  RAT+GV +    +D+ + +V ++ + E
Sbjct: 765 LMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKDE 813


>gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74]
 gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74]
          Length = 838

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/901 (41%), Positives = 545/901 (60%), Gaps = 88/901 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + D E    I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV 
Sbjct: 5   TPDLESPSNIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGMAELGVN 64

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           +NK + K ARI GEV+GKYHPHG++++YD + RMAQDWSLR  L++GQGNFGS+DGD PA
Sbjct: 65  YNKPHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSIDGDSPA 124

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL++ A  LL D+ K+TVDF+ N+D S QEP V+ A+ PN+L+NG  GIAVGM
Sbjct: 125 AMRYTEARLKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSSGIAVGM 184

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL EVVDG +A ++N +I ++ LM+ ++ PDFPTGA I G  G+K+A+ TGRG
Sbjct: 185 ATNMAPHNLTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIYGMEGVKSAFKTGRG 244

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE+  G + QI+VT++PY VNKA MLEK AEL+ +K+I  I   RDESDR 
Sbjct: 245 RVVMRAHATIEENRG-KTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV +L++ A  +V+LN LY++T+LQS FS+N VAL   +P    L  ++K +V  R 
Sbjct: 304 GLRVVYDLRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGRPMMLNLKDMMKYYVEHRF 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT+Y L +A  RAH+L GL IA+ N+D V+ +IR S +PE AR  LM+R      
Sbjct: 364 EVITRRTQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMER------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AILE+RL RLTGL RD ++ E + L  EI +
Sbjct: 418 --------------------FSLSDLQAKAILEMRLQRLTGLERDKLQAEYDELMTEIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             +IL+S  R   +IK+EL  ++      RRT I   G  ++ D   I  EDMV+T+SH 
Sbjct: 458 LKEILASEERKRQVIKEELTDIRARYGDERRTEINPLGDGNISDLSLIADEDMVITISHE 517

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR P + YR+Q RGG G      ++EDF   LF  + H ++L F+  G +Y   V+ 
Sbjct: 518 GYIKRTPTTEYRSQGRGGVGAKAASTKEEDFTEHLFTATMHNTLLAFTQKGRMYWLPVYE 577

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLS 663
           LP GS  ++G+ L N +++   +++  ++   +  +E   NN Y+V  T+ G +++  L 
Sbjct: 578 LPEGSRTSKGRPLANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLE 637

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            + +  ++G IA+ +D  D++L V     +NDI++ +  G+ VRF  S +R   GR + G
Sbjct: 638 AYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPM-GRTAAG 696

Query: 724 VRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           VRGISL +    D VI M  +   DA                                  
Sbjct: 697 VRGISLDEEDPTDHVIGMVCISSQDAQ--------------------------------- 723

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L VS+ G+GKR+    +RI+NR  KG+    +++  ++G 
Sbjct: 724 -------------------LLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITE--KVGR 762

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVAV  V DND +++++  G  IR PV+ I +  R T+GV +    + + + SV +I++ 
Sbjct: 763 LVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSVTKIKKE 822

Query: 901 E 901
           E
Sbjct: 823 E 823


>gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
 gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
          Length = 828

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 542/891 (60%), Gaps = 90/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  +M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   IQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E+V+  V +IDN      +  +D L+ I++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + QI+VTE+PY VNKA ++EKIAELVR+K+I  I D+ D S+R+G R+
Sbjct: 249 RAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I L+R A+A+VILN+LY++T +Q  F V M+AL G  P+  +L+ +L+ ++A +EEVV 
Sbjct: 309 CITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLAHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH++ GL  A+  +D++++IIR S   + A+  LM            
Sbjct: 369 RRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMD----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   SEVQ + I+ +RL +LTG+ R+ +  E   L I+I+E   I
Sbjct: 418 ---------------TFDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS R+ LL +I+QE+L++ ++    RRT I     D+  ED I +E+ V+ ++ LGY+KR
Sbjct: 463 LSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGGKG  G+   D+D++ +L + +TH  ++FF+S G VY+ K + +P  S
Sbjct: 523 MTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT ++P  E +      Y+  ATK+G V++  + D+  + +
Sbjct: 583 RTARGTAIINLLQLQPEEKITAVIPINEFKKGN---YLFMATKNGLVKKTPIEDYENVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    + DI+L TK GQC+RF  + +R   GR S+GVRGI+L 
Sbjct: 640 TGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMGVRGINLL 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VI M +    D                                             
Sbjct: 699 EEDEVIGMQLTCQGD--------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   ++L VSEKG GKRTS  +F   NR GKG++   +++  + G ++ V  VN  
Sbjct: 714 --------YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITE--KTGNVIGVKAVNSE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++I++++ +G +IR+    I I  R T GV +     D  V S+ ++RE E
Sbjct: 764 NEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKE 814


>gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R]
 gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909]
 gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
 gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R]
 gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909]
 gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/896 (42%), Positives = 568/896 (63%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +++ +  N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   GR + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  +                       R+++G                       
Sbjct: 693 EGDKVVGAS-----------------------RIVNG----------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  +N N
Sbjct: 707 -------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN--GPLARLVTINGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + I++++D G +IR  V  I    R+T GV +    ++ ++V+V  + E EI D++
Sbjct: 758 EDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV-EQEIEDKS 812


>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
 gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
          Length = 986

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/882 (42%), Positives = 550/882 (62%), Gaps = 93/882 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +  ++ + K A   GE
Sbjct: 137 LSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSAWTVGE 196

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+++IY+A+ RMAQD+S+RL LI+G GNFGS+DGDP AA RYTE RL  AA 
Sbjct: 197 VMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRLTHAAM 256

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG  GIAVGMATN+P HNL EV  
Sbjct: 257 DMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNLQEVAR 316

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               +IDNP+  L+ LM  + GPDFPTG +I+G  GIK+AY TGRG++ IR   HIE T 
Sbjct: 317 AVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVHIENTG 376

Query: 261 -GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              R+++V+TEIPYQVNK+ + E+IA+ V EK+I  I+D+RDES+R+G R+VI+LK+GA 
Sbjct: 377 RAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVIDLKQGAV 436

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN LY+ T LQ+ FSV  +AL    P   +L  +++ ++  +++VV RRTK+ L +
Sbjct: 437 PQVVLNNLYKRTQLQTSFSVIDIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTKFDLAR 496

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A+ R H+L GL IAV N+DEVV IIR S +   A+  + +R             IDD   
Sbjct: 497 AQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFG-----------IDD--- 542

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                       +Q  AIL++RL RLTGL RD++  +++ L  +I    D+L +  ++L 
Sbjct: 543 ------------IQGEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLE 590

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           +IK+EL+ + +   +PRRT+I      + D ED I  EDMV+TV+H  Y+KR+P++ YRA
Sbjct: 591 VIKEELMQIAERYASPRRTKISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRA 650

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG  G+ ++D DFV DLF+ STH  VLFF++ G VY+ KV  LP+GS  +RG AL
Sbjct: 651 QKRGGKGVQGLSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSAL 710

Query: 619 INILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           +N+L L + E  T ++    FP+      N Y+VFATK G V++  ++++ +  R G IA
Sbjct: 711 VNVLPLAEDEHPTAVITTRDFPD------NQYLVFATKQGMVKKTAIAEYDKSRRDGLIA 764

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE+++V    + N I+L T  G+ + F    +R  + RN+ GV+GISL     +
Sbjct: 765 INLKDGDELVNVRRVCEGNRIILCTSAGKAIMFSEEDVRPTS-RNTSGVKGISLKNNAYM 823

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + M                                EI++ K D                 
Sbjct: 824 LGM--------------------------------EISNGKGD----------------- 834

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L ++E G+GKRT   ++ + +R G+G+  T ++  ++ GALVA   V    ++++
Sbjct: 835 ----LLVITENGYGKRTPISEYSLQHRGGQGV--TTIAMTSKKGALVACRVVGPQHELMI 888

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +S++G +IRV   +I  + RAT+GV I + +  + V ++ R+
Sbjct: 889 MSEEGVMIRVKSMDISSSGRATQGVKIMNLSSTDHVSAMARM 930


>gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316]
 gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
 gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316]
 gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/896 (42%), Positives = 568/896 (63%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +++ +  N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   GR + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  +                       R+++G                       
Sbjct: 693 EGDKVVGAS-----------------------RIVNG----------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  +N N
Sbjct: 707 -------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN--GPLARLVTINGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + I++++D G +IR  V  I    R+T GV +    ++ ++V+V  + E EI D++
Sbjct: 758 EDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV-EQEIEDKS 812


>gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 814

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/889 (41%), Positives = 563/889 (63%), Gaps = 92/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I +V + ++M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK  
Sbjct: 3   EDNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF PN+D    EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D CVA + NP+I ++ L +I+ GPDFPTGA ILG++GIK+AY TGRG + +R
Sbjct: 183 PHNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYILGKSGIKDAYQTGRGKVKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE    +RE+I+V+EIPYQVNK+ ++EKIA+LV++K+I  I+D+RDESDR+G R+V
Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ++A+++LN LY+YT L++ F +  +AL    P+   L  +++ ++  ++EVV R
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGIPQVLNLKELIEYYIDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + +  ++   ++           
Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q++AIL+++L RL+GL  D +  E   L   I   L IL
Sbjct: 412 ---------------FNLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETISYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S   L+ +I  E+  +KD+    RR++I+  EG +D+  E+ I +ED+++T+++ GY+K
Sbjct: 457 NSEENLIKLIISEMEEIKDKFSDDRRSKIIPDEGEIDI--EELIEKEDVLLTLTNDGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+SLG VY  K + +P G
Sbjct: 515 RLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           S Q+RG A+INIL+L  GERIT +M   E +E S     +V  TK G +++ +  +F  I
Sbjct: 575 SRQSRGTAIINILNLESGERITEMMTLSELNEDSQ----IVLQTKDGTIKKTEAENFTNI 630

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IA+ L   D+++SV    +E +++++TK G  ++F    +R   GR + GVR I 
Sbjct: 631 RKNGIIAISLKDGDKLISVRQIDKEEELIISTKKGMTIQFNSQDLRSM-GRIAQGVRAIK 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+GD+V+SM                          I GD                    
Sbjct: 690 LAEGDEVVSMN-------------------------IKGD-------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E ++L V+E GFGK+TS  +F+  NR GKG++   V+  ++ G +V   PV+
Sbjct: 705 --------ETYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVT--DKTGKVVDTLPVD 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896
            ++ I++VS  G +IR+ V +I I  R T GV + +  +D +R+VSV +
Sbjct: 755 LDNDIMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSVTK 803



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEE---RCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +LI  + EEI    +D      I +E     +EL  KE  +LT++  G+ KR     +++
Sbjct: 464 KLIISEMEEIKDKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTNDGYIKRLPIDTYKV 523

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            NR GKGI A +     E   +  +   N ++ ++  +  G +  +   E+   SR ++G
Sbjct: 524 QNRGGKGIAAGNTK---EGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRG 580

Query: 880 VVIFSTAKDERVVSVERIRE 899
             I +    E   S ERI E
Sbjct: 581 TAIINILNLE---SGERITE 597


>gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141]
          Length = 822

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/901 (42%), Positives = 555/901 (61%), Gaps = 89/901 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V++T EM+ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M  +G+  +K Y 
Sbjct: 6   ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDKAYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGDP AA RYTE
Sbjct: 66  KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  LL D+ KDT+DF+ NYDGS +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 126 ARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY TGRGSI +R 
Sbjct: 186 HQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSITLRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IE+ S  +E I+VTE+PYQVNKA ++E+IAELV EKRI  I DLRDESDR G R+VI
Sbjct: 246 RVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++R A+A+VILN LY++T++Q+ F +N++AL   +P+   L   LK ++  +EEV+ RR
Sbjct: 306 EVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVIRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA  RAH+L GL IA+ ++D ++++IR S   + AR  LM++            
Sbjct: 366 TAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQ------------ 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++RL RLTGL R+ I  E   L   I E   +L+
Sbjct: 414 --------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLA 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRV 551
              ++L II++ELL +K+  +  RRT I+   +D +EDED I +E + +T++H GY+KR+
Sbjct: 460 DEEKVLEIIREELLEIKERFNDERRTEIIAASVDQIEDEDLIPQESIAITLTHNGYIKRL 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VYK+K + +P    
Sbjct: 520 PISTYRSQKRGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGR 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L +++ E I T++   +    W   ++ F TK G  +R  +++F  I  +
Sbjct: 580 TAKGIPIVNLLEIDKDEWINTMIRVEDFVEDW---FLFFTTKKGISKRTPVTEFANIRTN 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++SV+      DI++ TK G  +RFP + +R   GR++ GV+GI+L+ 
Sbjct: 637 GLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSM-GRSATGVKGITLSG 695

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M I+   D                                              
Sbjct: 696 DDEVVGMEILEEND---------------------------------------------- 709

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                +  I+T +  G   + S Y  RI +R GKG++  +++  N  G LVAV  V   +
Sbjct: 710 -----DVLIVTKNGYGKRTKGSEY--RIQSRGGKGLKTCNITSKN--GPLVAVKTVTGEE 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE---IVDEAES 908
            I+L++  G LIR+ V +I +  R T GV +     +E V +V ++ + E    VD  E 
Sbjct: 761 DIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKDEEENHVDPVEE 820

Query: 909 T 909
           T
Sbjct: 821 T 821


>gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
 gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
          Length = 840

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/905 (42%), Positives = 559/905 (61%), Gaps = 95/905 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+  NK + K ARI 
Sbjct: 10  INIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R  L++GQGNFGSVDGD PAA RYTE R++K 
Sbjct: 70  GEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEARMKKI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  +L D+ K+TVDF  N+D + +EP VL  R PN+LVNG  GIAVGMATN+  HNL EV
Sbjct: 130 SEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPHNLSEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++G  A I+N DI+++ LM  I+ PDFPTG +I G  G+++A+ TGRG +V+R  S +E+
Sbjct: 190 INGVNAYINNRDIEIEELMTHIKAPDFPTGGIIYGYEGVRDAFMTGRGRVVMRAKSSVEE 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            +G RE I++TEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V  LK+ +
Sbjct: 250 VNG-RECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVYILKKDS 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +V+LN L+++T+LQS FSVN +AL   +P+   L  I+  FV  R EVV+RRTKYLL 
Sbjct: 309 LPNVVLNTLFKHTALQSTFSVNNIALVKGRPQMLNLKDIIYNFVEHRHEVVIRRTKYLLR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +RAH+L GL IA  N+DEV+ +IR S N E AR +L++R                  
Sbjct: 369 KAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVER------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q +AI+E+RL +LTGL +D +R E + L I I++  DILSS  R +
Sbjct: 411 --------FQLSEIQVKAIVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSSEDRRM 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ ELL +K++    RR+ I     D   ED I  E +V+T+SH GY+KR PL  Y+ 
Sbjct: 463 EIIQTELLEIKEKYGDDRRSEINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPLKEYKI 522

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG G+     RDEDF+  +F  + H  +LFF+  G  +  +V+ +P GS  ++G+A+
Sbjct: 523 QNRGGVGQKASTTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTSKGRAI 582

Query: 619 INILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            N+++L+  +RI   +      +E   NN YV+  TK G V++  L  + +   +G  A+
Sbjct: 583 QNLMNLDPDDRINAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGINAI 642

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQV 735
            +   DE+LS      EN ++L  + G+ +RF    IR   GR + GV+GI+LA + D+V
Sbjct: 643 SVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPM-GRGAAGVKGITLASEKDEV 701

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M             IC                     +KN                  
Sbjct: 702 IGM-------------IC---------------------VKNP----------------- 710

Query: 796 KEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           +E+ +L VSEKG+GKRT   D      +RI+NR GKG++   +S+  + G LVA+  V+D
Sbjct: 711 QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISE--KTGQLVAMKTVHD 768

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVD 904
            D ++++   G  IR+ V++IR   R+T+GV + S   D+ + +V +I      E+EI D
Sbjct: 769 EDDLMIIKKSGVAIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKIINEDEDETEIND 828

Query: 905 EAEST 909
           + + T
Sbjct: 829 DLDVT 833


>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
 gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
          Length = 833

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/900 (42%), Positives = 560/900 (62%), Gaps = 90/900 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NP++    LM+II GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+TS  +++IV+ EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKSDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+  V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+          
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                   +Y+        LSE Q +AIL++RL RLTGL R+ I +E   L   I E   
Sbjct: 413 --------NYS--------LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ +K+  +  RRT IV  G+  +EDED I  E++V+T++H GY+
Sbjct: 457 ILADNEKVLEIIREELIEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               A+G  +IN+L + +GE I  I+P  E DE+S    Y+ F T+HG  +R  LS F  
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDENS----YLFFTTRHGVSKRTTLSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+++V     E  I++ TK G  +RF  + +R   GR + GV+GI
Sbjct: 633 IRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREM-GRTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L++ D V+ M I L  DA+                                        
Sbjct: 692 TLSEDDIVVGMEI-LEPDAN---------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E+G+GK T   ++R+  R GKG++   ++  N  G LV V   
Sbjct: 711 ------------VLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNN--GPLVTVKAT 756

Query: 848 N--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N    + +++++  G +IR+ V++I    R T+GV +     +E V +V  + +S+  DE
Sbjct: 757 NAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQSQEDDE 816


>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/880 (43%), Positives = 537/880 (61%), Gaps = 84/880 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V+I ++M  +YL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M QMG++ N+ Y KCA
Sbjct: 6   IKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEV+  YHPHG+A++Y+AL RMAQ WS+R  L+ GQGNFGS D DPPAA RYTE ++
Sbjct: 66  GTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAKM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD   +EPVV  AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 AAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ DG + +I+NP+   + L  I+RGPDFPTG +I GR GI+N YA GRG IVIR  +H
Sbjct: 186 HEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLIQGREGIRNTYANGRGRIVIRARTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R  I+ TE+PYQVNKA +++KIAEL R+KRI  I+++RDESDRQG R+V+ELK
Sbjct: 246 IEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+   ILN L++YT++QS F+ NM+AL   +P+  TL   L+ ++  RE+V+ RRT++
Sbjct: 306 RDANPRSILNSLFKYTAMQSSFNTNMLALVDSQPQTLTLKKFLQHYITHREQVITRRTQF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  R H+L GL IA+ NLDEV+ IIR S        E +Q+++             
Sbjct: 366 ELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFG------------ 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         S  Q RA+L++RLA L  L R  + +EL  +   I     +LS  +
Sbjct: 414 -------------FSNEQARAVLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDIN 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + GII  +L  +K++    RRT I EG + D +DED I  E++VVT++  GY+KR+P  
Sbjct: 461 EIRGIIMADLKELKEKFGDARRTEIEEGEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPSG 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGG+G +G+  R++D V  L +  TH S+LFF+  G V++ +V+ LP  S  AR
Sbjct: 521 TYRAQRRGGRGVTGMATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTAR 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ LIN++S+ Q ER+T I+  P+  +   + ++V ATK G V++  +SDF  + RSG I
Sbjct: 581 GEHLINLISIEQRERVTAIVYVPKGHT---HDFLVVATKKGEVKKTAMSDFEVVRRSGLI 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM L+  DE++  +    E D+LL T  G  +RF +  +R  A R S GVRGI       
Sbjct: 638 AMNLEDDDELIGAKLVGPEADVLLITLHGHAIRFGVDQLRS-ASRTSGGVRGI------- 689

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                       RL   DT  + SL  ++ + G           
Sbjct: 690 ----------------------------RLTDDDT--VVSL--NAVIPGG---------- 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V+E G+GKRT   ++   NR G G+  + V++     A   +    DND ++
Sbjct: 708 ----ELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASARMVTEEDND-LM 762

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           L+S  G +IR  V+ +R A RAT+GV + + A+D++VV+V
Sbjct: 763 LISASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAV 802


>gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 828

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 542/891 (60%), Gaps = 90/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  +M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   IQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E+V+  V +IDN      +  +D L+ I++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + QI+VTE+PY VNKA ++EKIAELVR+K+I  I D+ D S+R+G R+
Sbjct: 249 RAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I L+R A+A+VILN+LY++T +Q  F V M+AL G  P+  +L+ +L+ ++A +EEVV 
Sbjct: 309 CITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLAHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH++ GL  A+  +D++++IIR S   + A+  LM            
Sbjct: 369 RRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMD----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   SEVQ + I+ +RL +LTG+ R+ +  E   L I+I+E   I
Sbjct: 418 ---------------TFGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS R+ LL +I+QE+L++ ++    RRT I     D+  ED I +E+ V+ ++ LGY+KR
Sbjct: 463 LSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGGKG  G+   D+D++ +L + +TH  ++FF+S G VY+ K + +P  S
Sbjct: 523 MTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT ++P  E +      Y+  ATK+G V++  + D+  + +
Sbjct: 583 RTARGTAIINLLQLQPEEKITAVIPINEFKKGN---YLFMATKNGLVKKTPIEDYENVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    + DI+L TK GQC+RF  + +R   GR S+GVRGI+L 
Sbjct: 640 TGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMGVRGINLL 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VI M +    D                                             
Sbjct: 699 EEDEVIGMQLTCQGD--------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   ++L VSEKG GKRTS  +F   NR GKG++   +++  + G ++ V  VN  
Sbjct: 714 --------YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITE--KTGNVIGVKAVNSE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++I++++ +G +IR+    I I  R T GV +     D  V S+ ++RE E
Sbjct: 764 NEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKE 814


>gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
 gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
          Length = 924

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/925 (41%), Positives = 559/925 (60%), Gaps = 35/925 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFSNLGK- 713

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 AIR        G      A  +  IS  +     AD +  +   KH   +    
Sbjct: 714 ------AIRFNEYWEKSGNDEAEDADIETEISDDLE-DETADNENALPSGKH-GVRPSGR 765

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                    L  D  +   I+     E    +  +LT +  G+GKRT   D+   N+ G+
Sbjct: 766 GSGGLRGMRLPADGKIVSLIT--FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G  A +  + N  G LVA   V + D ++L++  G LIR  V EIR   RA  GV + + 
Sbjct: 824 GNIAINTGERN--GDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAAAGVRLINL 881

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
            + E +VS+ER+ E E  DE    E
Sbjct: 882 DEGETLVSLERVAE-EAEDENPEVE 905



 Score = 37.7 bits (86), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            + + KV  +       R  A + +++L++GE + ++    E+    N          GN
Sbjct: 857 KLIRTKVEEI---RETGRAAAGVRLINLDEGETLVSLERVAEEAEDEN---PEVENPEGN 910

Query: 657 VRRNKLSD 664
              N +SD
Sbjct: 911 EAENAVSD 918


>gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
          Length = 918

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/924 (41%), Positives = 561/924 (60%), Gaps = 40/924 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R   +     +G +      I     D +          AD +  +   KH   +    
Sbjct: 715 IR--FNEYWEKSGNDEAEDADIETEVSDGIEDET------ADSENALPSGKH-GVRPSGR 765

Query: 766 SGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                    L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N+ G
Sbjct: 766 GSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGG 822

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +
Sbjct: 823 QGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLIN 880

Query: 885 TAKDERVVSVERIRESEIVDEAES 908
             + E +VS+ER+ E    DE+ES
Sbjct: 881 LDEGETLVSLERVAE----DESES 900


>gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23]
 gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23]
          Length = 843

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/891 (41%), Positives = 544/891 (61%), Gaps = 87/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM +     + Y KCA
Sbjct: 10  IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQPYKKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYTECRL
Sbjct: 70  RVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMRYTECRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL K+TVD  PN+D S +EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 130 SKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNPDID + LM+ I GPDFPTGA I G  G+K+AY TGRG IV+R  + 
Sbjct: 190 GEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIYGLQGVKDAYETGRGRIVMRAKAE 249

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE  SGD  ++IVVTEIPY VNKA ++  IA+L  + +I  +A++ DES RQG R+V++ 
Sbjct: 250 IE--SGDTHDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGMRIVVDC 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTK
Sbjct: 308 KRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTK 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++RAH+L GL IAV N+DEVV IIR S  P  A+R L  R              
Sbjct: 368 YDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEAR-------------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E+Q++AI+++RLA+LTGL  D +  E + L   I E  +IL + 
Sbjct: 414 ------------FELDELQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEILDNP 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R   ++K +L  VK++    RRT I+    +   ED    + +V+T+SH+GY+KR PLS
Sbjct: 462 ERCKEVMKADLQEVKEKYGDERRTEIIPFDHEFNAEDFYPDDPVVITISHMGYIKRTPLS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGG G      RD DF   ++  + H ++LFF+  G  Y +K + +P G   ++
Sbjct: 522 EFHEQGRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDKNSK 581

Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G+A+ N+L++   + I  ++      D    N+ YVVFATK G +++  L  + +   +G
Sbjct: 582 GRAIQNMLNIEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPRANG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ ++  D+++ V      N++LL  + G+ VRF  + +RV  GR S GV G+ L  G
Sbjct: 642 VIAININEGDQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVM-GRVSTGVIGMRLDGG 700

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V                                   ND + E         
Sbjct: 701 DDEVVGMVCV-----------------------------------NDPNTE--------- 716

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   I+ VSE G+GKR+   D+R ++R  KG++   +++  + G LVA+  V D +
Sbjct: 717 -------TIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITE--KTGRLVAIKVVTDEN 767

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESE 901
            +++++  G LIR+ V ++R+  RAT+GV +I  T K++ + SV ++  S+
Sbjct: 768 DLMIINKSGVLIRLKVADVRVMGRATQGVRLINLTKKNDSIASVCKVMHSQ 818


>gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
 gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
          Length = 818

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/883 (41%), Positives = 552/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRQGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V     D DE                                        
Sbjct: 693 EGDKVVGASVV----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + +++++D G +IR  V  I    R+T+GV +    +D ++V+
Sbjct: 758 EDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVT 800



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---STHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK-DE-----RVVSVERIRESE 901
           G + R+   EI    R  KG+ I +  K DE      +++VE+ R  E
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTIINVEQDRSDE 608


>gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 829

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/905 (41%), Positives = 557/905 (61%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+IVV+E+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T LQ+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE++RIIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG  + +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I                                  L+ +S V    
Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPNSEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   DE
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817

Query: 906 AESTE 910
             + E
Sbjct: 818 KSTDE 822


>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 832

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/891 (43%), Positives = 555/891 (62%), Gaps = 87/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y K A
Sbjct: 27  IVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE R+
Sbjct: 87  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP HN+
Sbjct: 147 SKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 206

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G + +IDNPD  +D LM +I+GPDFPT  +ILG   I+ AY TGRG I +R  +H
Sbjct: 207 VEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRARAH 266

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  + DLRDESDR G R+VIEL+
Sbjct: 267 IETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVIELR 326

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L+ ++  +E V+ RRT+Y
Sbjct: 327 RDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQETVITRRTRY 386

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM                 
Sbjct: 387 ELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM----------------- 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                   DG   L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+ R 
Sbjct: 430 --------DG-FKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRM 480

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+PL  
Sbjct: 481 KVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDT 540

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P    QA+G
Sbjct: 541 YRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKG 600

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L++   ERIT ++   E  +   + Y+   TKHG V++  LS+F  I ++G  A
Sbjct: 601 TAIVNLLAVENDERITAVIQVKEFRA---DRYLFLGTKHGVVKKTPLSEFGNIRKNGLRA 657

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++ V+    EN I+L T+ G+ + FP   +R   GR + GVRGI+LA GD+V
Sbjct: 658 VNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEDGVRSM-GRVARGVRGITLADGDEV 716

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++M +                                  L++DS V              
Sbjct: 717 VAMDV----------------------------------LRSDSEV-------------- 728

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V +N +++L
Sbjct: 729 -----LTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQELML 781

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++ +G +IR  V+EI + SR T+GV + + A+ +RV S+  +  + IVD A
Sbjct: 782 ITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATM--NRIVDSA 830


>gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735]
 gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735]
          Length = 867

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 541/891 (60%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+A++Y AL RM QDW++R  L++GQGNFGS+DGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G  G++ AY TGRG IV+R  + 
Sbjct: 192 REVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRIVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  DES RQG R+VI++K
Sbjct: 252 IE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTKY
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  D +  E   L  +I     IL    
Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VKD+    RRT I     +   ED    + +V+TVSH+GY+KR PLS 
Sbjct: 465 LCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +  Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   + I  I+      DE   N+ YV+FATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNMLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR + GVRG+ L  G 
Sbjct: 645 IAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGVRGMRLDGGD 703

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M  V  A+                                               
Sbjct: 704 DEVVGMVTVNEAET---------------------------------------------- 717

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                + ++ VSE+G+GKR+   D+R++NR GKG++   +++  + G LV++  V D + 
Sbjct: 718 -----ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVSIKNVTDEND 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           +++++  G +IR+ V ++R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 771 LMIINKSGIVIRLVVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821


>gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16]
 gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16]
          Length = 888

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/904 (41%), Positives = 555/904 (61%), Gaps = 65/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF  NYDGS +EP +L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V+R  
Sbjct: 186 NLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAK 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G RVVI
Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+A R EVV RR
Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W+++ +++++ 
Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSALVREMLA 425

Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
             +  +               + + +DG   LS+ Q + IL++RL RLTGL +D I  E 
Sbjct: 426 RAEGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEY 485

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I  +D
Sbjct: 486 RDIMAVITDLLDILARPERITAIIVDELTAIRAEFGDERRSQIELNATELDTEDLITPQD 545

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS+ G 
Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y  KV+ +P GS  +RG+ ++N+  L++GE+I  I+P  + ++     ++  AT  G V
Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFDAEH---FIFMATARGTV 662

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   
Sbjct: 663 KKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG++L  G  VI+M +               +  +  R  +      +T+ +N
Sbjct: 722 GRQARGVRGMNLEDGQTVIAMLVAPAE--------TAEEAEAGMRGSV------LTATEN 767

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  I+E                +  G G +      + S R+G+ + A  VS  +E
Sbjct: 768 GYGKRTPIAE---------------YTRHGRGTK-GMIAIQTSERNGRVVAAALVSPEDE 811

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                          I+L++  G LIR  V EIR   RAT+GV + +  +  ++  ++RI
Sbjct: 812 ---------------IMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 856

Query: 898 RESE 901
            ES+
Sbjct: 857 VESD 860


>gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5]
 gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5]
          Length = 833

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/900 (41%), Positives = 556/900 (61%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID     N D  ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S+R+G R+
Sbjct: 249 RAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +L+ ++  +EEVV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLRLYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ ++DEV++IIR S N + A+ EL+ R          
Sbjct: 369 RRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIAR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++VQ +AI+++RL  LTGL R+ + +E   L  +I E   I
Sbjct: 419 ----------------FDLTDVQAQAIVDMRLRALTGLEREKLESEYEELMKKIGELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LL +I++E+L + D+    RRT I     D+  ED I RE++V+T++ LGY+KR
Sbjct: 463 LADRKLLLSVIREEILIINDKYGDERRTSIGFDEFDISMEDLIPRENVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   DED++ +LFI STH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MTVDTFKSQNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+INIL L   E+IT ++P  E E      ++  AT+ G V++  ++D+  + +
Sbjct: 583 RTARGTAIINILQLMPDEKITAMIPIKEYEDGK---FLFMATEKGLVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D ++ V+    E DI+L TK GQC+RF    +R   GR S+GVRG++L+
Sbjct: 640 TGLAAITLREDDRLIEVKITDNEEDIVLVTKYGQCIRFSEKDVRA-TGRTSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI+M                   MS Q      D                      
Sbjct: 699 DRDEVIAM------------------QMSTQ----GSD---------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VS+KG GKRT+  +F   NR GKG++   +++  + G +V +  VN++
Sbjct: 715 ---------LLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITE--KTGNVVGMKAVNED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +I++++ +G +IR+  ++I +  R T GV + + A+ + V SV ++R++    + E  E
Sbjct: 764 SEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVASVAKVRKASAEIDGEQVE 823


>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/886 (42%), Positives = 549/886 (61%), Gaps = 85/886 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L +R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ E S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFEESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                I    V+ AD                                       IS E  
Sbjct: 695 -----IDTDFVVDADV--------------------------------------ISSE-- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D 
Sbjct: 710 ------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDDT 761

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +
Sbjct: 762 QDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/894 (42%), Positives = 543/894 (60%), Gaps = 88/894 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I++EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K + KCARI 
Sbjct: 11  VDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDKPHRKCARIV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++++YDAL R+AQD+S+R  L++G GNFGSVDGD  AA RYTE R+ K 
Sbjct: 71  GDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMRYTEARMDKM 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A+ ++ D+ K+TVDF PNYDG  QEP V+ +R+PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 131 ANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATNIPPHNLTEV 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG   +I+NP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +V+R  + IE+
Sbjct: 191 IDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIMGKSGIREAYETGRGKVVVRANATIEE 250

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+VIELKR A
Sbjct: 251 DGG-RHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIVIELKRDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +VILNQLY++T LQ  F + M+AL   +P+   L  +L  ++ F++EV+ RRT++ L 
Sbjct: 310 NPNVILNQLYKHTKLQDSFGIIMLALVDNQPKVLNLKEVLVHYLNFQKEVITRRTQFELE 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL IA+ N+DEV+ IIR S +   A+  L +R                  
Sbjct: 370 KAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQER------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q+ AI+E+RL  LTGL R  I +EL+ L   I +  +IL++ + +L
Sbjct: 412 --------FALSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKEILANEALIL 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ EL  +K      RRT I     D+  ED I    +VVT++  GY+KR+  S Y A
Sbjct: 464 NIIRDELNEIKGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIKRIAESTYSA 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG      +++D V ++F+ STH  +LFFS+ G VY  K + +P     A+G  +
Sbjct: 524 QKRGGKGIQAATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNV 583

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           IN+L L   E+I  ++   E E S    Y+VF TK G +++  L DF  I ++G  A+ L
Sbjct: 584 INLLLLRPEEKIQAVITLSEFEKSQ---YLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGL 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE++SV   + E+ I++ T+ G  +RF    +R   GR + GV+GISL   D V+SM
Sbjct: 641 REDDELISVRLSSGEDQIIMVTQNGYSIRFKEEDVRPM-GRTATGVKGISLRDEDNVVSM 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            IV                                    D S++                
Sbjct: 700 EIV------------------------------------DESMD---------------- 707

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            IL VSE G+GKRT   +++  NR G GI    VS+  + G +VA   VND  +I++++ 
Sbjct: 708 -ILVVSENGYGKRTPIGEYKCQNRGGMGIITYKVSE--KTGKVVAATMVNDEHEIMIINS 764

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAESTE 910
              +IR+   EI    R+  GV +     + +V+++ ++   + EI D  E  E
Sbjct: 765 ADIVIRINSKEISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEEIEDLQEHNE 818


>gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302]
 gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302]
          Length = 867

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 541/891 (60%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGS+DGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G  G++ AY TGRG IV+R  + 
Sbjct: 192 REVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRIVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  DES RQG R+VI++K
Sbjct: 252 IE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTKY
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  D +  E   L  +I     IL    
Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VKD+    RRT I     +   ED    + +V+TVSH+GY+KR PLS 
Sbjct: 465 LCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +  Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   + I  I+      DE+  N+ YV+FATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNMLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732
           IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR + GVRG+ L    
Sbjct: 645 IAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGVRGMRLDGSD 703

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M  V  A+                                               
Sbjct: 704 DEVVGMVTVNEAET---------------------------------------------- 717

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                + ++ VSE+G+GKR+   D+R++NR GKG++   +++  + G LV++  V D + 
Sbjct: 718 -----ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVSIKNVTDEND 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           +++++  G +IR+ V ++R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 771 LMIINKSGIVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821


>gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  N
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
 gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
          Length = 843

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/881 (41%), Positives = 543/881 (61%), Gaps = 85/881 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGS+DGD PAA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN DID D LM+ I+ PDFPTG  I G +G++ AY TGRG IV+
Sbjct: 182 PTHNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIYGVSGVREAYETGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++I+V EIPY VNK  ++EKIA LV EK++  I+ + DE+DR+G R+
Sbjct: 242 RAKTEIE-SHPTHDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T LQS F+VN +AL   +P   +L  +++ FV  R EVV+
Sbjct: 301 VIDVKRDANASVVLNKLFKMTELQSSFNVNNIALVHGRPRLLSLKDLIRLFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ RAI+E+RL +LTGL ++ +  E   L  +I    +I
Sbjct: 411 ----------------FQLTEVQARAIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS+      +IK ELL VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +R Q RGG G  G   RDEDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L++   +++T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 RTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V     +NDI++  + G+ +RF  +A+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+V+ M             IC                     +K+         
Sbjct: 694 LDEDGQDEVVGM-------------IC---------------------IKDP-------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +++ I+ +SE G+GKR+   D+R +NR GKG++  ++++  + G LVA+  
Sbjct: 712 ---------QKETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITE--KTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLGK 801



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++ ++T+S  G+ KRT   DFR  +R G G +    S+  +   +  ++P   ++ ++  
Sbjct: 500 DEMVITISHLGYIKRTPLSDFRTQHRGGVGAKG---SETRDEDFIEHIYPATMHNTLLFF 556

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIR 898
           + KG    + V EI   +R +KG  I    +   D++V +  R++
Sbjct: 557 TQKGKCYWLKVYEIPEGNRTSKGRAIQNLLNIEADDKVTAYLRVK 601


>gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
 gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
          Length = 932

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/882 (41%), Positives = 538/882 (60%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K A
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK
Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y
Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DE++ IIR S   + A   + +R               
Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER--------------- 490

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ QT AILE+RL RLTGL    I +EL  L   I     +LS   
Sbjct: 491 -----------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQ 539

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+ELL VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ 
Sbjct: 540 LVHEIIKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG
Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A++N+L L +GE I+ ++    FP DE      Y++FAT+HG V++  +  + +  R G
Sbjct: 660 TAIVNLLPLEKGETISAVIATKDFPSDE------YLMFATEHGMVKKTSMDLYDRTRRDG 713

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D ++SV+       +L+ +  G+ + +    +R   GR+++GVRG+++   
Sbjct: 714 LIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPI 772

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +V+ M I   A  D D                                           
Sbjct: 773 AKVLGMEI---AQPDTD------------------------------------------- 786

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +  ++EKG+GKRT   ++   +R G+G+    ++   + G L  +  V ++D+
Sbjct: 787 -------LFVITEKGYGKRTPIAEYPEHHRGGQGVFT--ITMTEKKGLLAVMKIVAEDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I+++S++G  +R PV+ I    R+T+GV +  TA  +RV +V
Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAV 879


>gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
 gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
          Length = 822

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL I++ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RIAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  +RF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++     D DE                                        
Sbjct: 693 DGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G+L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ I +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRIAKGLPIVNLLKLDEGESIQTIINVESERSDDA 609


>gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 818

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/883 (41%), Positives = 552/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRQGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V     D DE                                        
Sbjct: 693 EGDRVVGASVV----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + +++++D G +IR  V  I    R+T+GV +    +D ++V+
Sbjct: 758 EDLMIITDTGVMIRTGVANISQTGRSTQGVKVMRLDQDAKIVT 800



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---STHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK-DE-----RVVSVERIRESE 901
           G + R+   EI    R  KG+ I +  K DE      +++VE+ R  E
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTIINVEQDRSDE 608


>gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 910

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/897 (42%), Positives = 542/897 (60%), Gaps = 54/897 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I+L
Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L    W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALLEKA 425

Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D +   G +D    LS  Q  AILELRL RLTGL +D +  E   + 
Sbjct: 426 GAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMNVIREELALILQQYGDGRRTEIVESGVDFCREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+ +G VY+ 
Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVLCFTDVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           +V+ +P  S  A+G+ +IN+L L+  E +T I+P   FPE      N YV  AT  G V+
Sbjct: 606 RVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFPE------NHYVFMATASGTVK 659

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +L+ F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   G
Sbjct: 660 RVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKN 777
           R + GVRG           M + L A  D ++                 +    I SL  
Sbjct: 719 RTAKGVRG-----------MRVTLAAAVDSEDADLDNDDSDDNDDSSDSNVLSRIVSL-- 765

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              V     E  C             S  G+GKRT   DF    R GKG+ A   S+ N 
Sbjct: 766 --VVVPETGEVLC------------ASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN- 810

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +  E +V V
Sbjct: 811 -GELVGAVSIDETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGV 866


>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 824

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/886 (42%), Positives = 540/886 (60%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I DEM+ SY+ Y+++VI+GRA+PD RDGLKPVHRRIL  M + G+  +K Y K A
Sbjct: 24  VVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNEAGITHDKAYKKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+ A+YD+L RM QD+SLR  LI+GQGNFGSVDGD  AA RYTE R+
Sbjct: 84  RVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRM 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L+D+ K TVDF+PNYDGS +EP VL ++ PN+L+NG  GIAVGMATN+  HNL
Sbjct: 144 DKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGIAVGMATNMAPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +ID+P+ +L  L +I++GPDFPTG +I+G +GIK+AY TGR  I +R V+ 
Sbjct: 204 GEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGTSGIKSAYETGRSPIYLRAVTE 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   D+ +IVV E+PYQVNKA ++E IA LVR+K+I  I+DLRDES R+G RVVIELK
Sbjct: 264 IEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDESGREGMRVVIELK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+  V+LNQLY+ T L++ F +  +AL    P    L  +++ ++  R +V+ RRT +
Sbjct: 324 KAANPKVLLNQLYKQTQLETTFGIINLALVDGVPRVLNLRELIQIYLKHRIDVISRRTVF 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL +A+ N+DEV+++IR S   E AR  L+                 
Sbjct: 384 DLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLIS---------------- 427

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q +AIL+++L RLTGL R  I  E N L   I +  DIL++  
Sbjct: 428 ----------NFDLDEIQAKAILDMKLQRLTGLERQKIDEEYNGLIDTIADLKDILANDE 477

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   II+ E+L +KD+    RRT I     ++ DED I  E++VVT +  GY+K +PL  
Sbjct: 478 RKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVVVTSTQSGYIKNIPLQT 537

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGG+G  G+  +++D V  +F+ STH  +LFF++ G VY +KV+ +P GS Q+RG
Sbjct: 538 YNMQHRGGRGVRGMETKEDDTVGSIFVASTHDYILFFTNRGKVYWQKVYDIPRGSRQSRG 597

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L L +GE +  ++P  + E   N+ Y+   T+ G V+R  LSDF    ++G IA
Sbjct: 598 KAIVNLLELAEGESVNAMIPVHDFE---NDRYLFMGTRDGTVKRCSLSDFSNPRKAGIIA 654

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE+++V       DI+L ++ G+ +R     +RV  GR + GVRG+ LA G  V
Sbjct: 655 ISLKEGDELVNVLQTDGNQDIMLASRHGKALRISEEDVRVM-GRTARGVRGMKLA-GPDV 712

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I    V+ +D                                                  
Sbjct: 713 IVSLDVVDSDG------------------------------------------------- 723

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +LTV+E GFGKRT   ++R   R G+G+        N  G +V V  V D+D+IIL
Sbjct: 724 ---TLLTVTENGFGKRTPFDEYRTLRRGGQGVITIFTDMRN--GPVVTVKTVEDDDEIIL 778

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            S  G ++R+PV +IR+  R TKGV I +  + +++VS+ RI++ E
Sbjct: 779 TSSAGIVMRIPVTDIRVQGRNTKGVKIMNIREKDKLVSLARIKKEE 824


>gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
 gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 822

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 824

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/897 (41%), Positives = 556/897 (61%), Gaps = 92/897 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + KCARI 
Sbjct: 12  IDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+++IY +L  MAQ+WS+R  L++G GNFGSVDGD  AA RYTE RL K 
Sbjct: 72  GDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDTVDF PN+D + +EP V+ ARYPN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPHNLSEV 191

Query: 199 VDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           ++  V +I+N     +  +D +++I++GPDFPTGA ILG  GI++AY TGRG I +R VS
Sbjct: 192 INAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIKGIRDAYTTGRGKIKVRAVS 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE     + +IVVTE+PY VNKA ++EKIAELV++K++  I DLRDES+R+G RVVIEL
Sbjct: 252 EIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGMRVVIEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +A+VILN+LY++T LQ  F VNM+AL   +P+   ++ +L+ ++A +E+VV RRTK
Sbjct: 312 RRDVNANVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYLAHQEDVVTRRTK 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA++RAH+L GL IA+ N+DE+++IIR S N   A+ EL++R              
Sbjct: 372 YDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR-------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+VQ +AI+++RL  LTGL R+ +  E N L  +I+    IL+  
Sbjct: 418 ------------FGLSDVQAQAIVDMRLRALTGLERERLEAEYNELLSKIEYFESILADN 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +LLG+IK+E+L V+ +    RRT  ++   +MEDED I +ED+++ ++ LGY+KR+   
Sbjct: 466 KKLLGVIKEEILIVEGKYKDDRRTGFIQD-DEMEDEDLIQKEDIIIAMTKLGYIKRMSPD 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGGKG  G+   D+DF+ D+ + +TH  + FF++ G VY  K +++P  S  AR
Sbjct: 525 NFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTAR 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L L   E+I+ I+P    E+S    Y+   TK G +++ +++ F  I ++G  
Sbjct: 585 GIAIVNLLQLQPDEKISAIIP---SEASSGEGYLFMVTKKGTIKKCRINLFDNIRKNGLA 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    ++D+++ +K G C+R     IR   GR + GVRG+ L + D+
Sbjct: 642 AINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAM-GRGATGVRGMRLNEADE 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M                                                     +L 
Sbjct: 701 VIGM-----------------------------------------------------QLA 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            + +++L VSE G+GKRT   +F++ NR GKGI     +  ++ G LV    VN++ +I+
Sbjct: 708 SQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDN--DKTGKLVGAKLVNEDREIL 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAEST 909
           L++ +G +IR+ V+ I +  RA  GV + +  +  D ++ S+ ++RE +  +  E +
Sbjct: 766 LITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASIAKVREEKNTESVEES 822


>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 844

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/898 (42%), Positives = 555/898 (61%), Gaps = 90/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I+ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  +K + K A
Sbjct: 8   LKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKPFKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+
Sbjct: 68  RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TVDF PNYDG   EP V+ AR+PN++VNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            E +D   AV+D+PDI +  LM+  I+GPDFPTG +ILGR+GI+ AY TGRGSI+ R   
Sbjct: 188 TETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSIITRSKY 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+E+    + +IVVTEIPYQVNKA ++ KIA+LVREK++  I  L DES+R G R+VIEL
Sbjct: 248 HVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGIRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++    +V++NQL+R TSLQ+ F VNM+AL    P++  +  +L+ +V  + +VVVRRT+
Sbjct: 308 RKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDVVVRRTQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DRAH+L GL IA+ ++DE++R+IR S N   AR  LM+R              
Sbjct: 368 FDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMER-------------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AILE+RL RLTGL RD I NE   L   I +  DIL++ 
Sbjct: 414 ------------FKLTEIQANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANH 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           SR++ IIK EL  VK+    PRRT I E    MEDED I  ED+V+T++  GY+KR+P+ 
Sbjct: 462 SRVIQIIKDELTEVKNRFGDPRRTEISEADYSMEDEDLIPVEDVVITMTTNGYIKRMPID 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P     A+
Sbjct: 522 TYRTQNRGGRGVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  ++N+L+L++ E++  ++P  PE ES     Y++F T++G V+R  +S+F  I ++GK
Sbjct: 582 GLPVVNLLNLDKEEKVRALVPVNPESESE----YLLFVTQNGLVKRTPMSEFDSIRQNGK 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V+  T +++I++    G+ VRF    IR   GR + GV+G ++   D
Sbjct: 638 IAITLRDDDELMGVKETTGDDEIIIAGSNGKAVRFHEDGIRAM-GRTASGVKGFNV---D 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             + + +    D           H+ A                        +SE    + 
Sbjct: 694 GSVVVGVATSRDG---------THLLA------------------------VSENGYGKR 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E++ LT                   R  KG++  ++++  + G LV+V  VN ++ +
Sbjct: 721 TAIEEYRLTT------------------RGAKGVKTINITQ--KTGDLVSVRAVNGDEDV 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910
           +++++ G +IR+ V  I I SR T+GV + +  +DE V  +  + +E E  D AE +E
Sbjct: 761 MIITNTGIIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKEEEAEDTAEVSE 818


>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 815

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 555/886 (62%), Gaps = 90/886 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I ++ +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Q+G++ NK  
Sbjct: 3   ENQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+GKDTVDF PN+DG   EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + NP+I +D L++ I GPDFPTGA+ILG+TGIK AY TGRG I  R
Sbjct: 183 PHNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALILGKTGIKEAYTTGRGKIKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE    +RE+I+++EIPYQVNKA ++EKIA+LV+EKRI  I+D+RDESDR+G R+V
Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KR ++A+++LN LY+YT L++ F +  +AL G +P+   L  +++ +V  ++EVV R
Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALVGGEPKILNLKELIEYYVDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L++AR+R H++ GL IA+ ++DE+++IIR S + +  ++    R           
Sbjct: 363 RTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q++AIL+++L RL+GL  + +  E   L   I+  L IL
Sbjct: 412 ---------------YKLSDAQSQAILDMQLKRLSGLEIEKLNAENKELADTIEYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S   L+ +I  E+  +K++    RRT+IV  EG +D+   + I  ED+++ ++  GY+K
Sbjct: 457 NSEENLINLIIDEITEIKEKYSDERRTKIVPDEGEIDI--TELIEEEDILINLTKDGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+SLG VY  + +++P G
Sbjct: 515 RLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  +RG+A+INIL+L  GE+IT +M   E      N  +V  T+ G +++    +F  I 
Sbjct: 575 SRTSRGQAIINILNLETGEKITEMMTLSE---LSKNSQLVLQTQQGQIKKTDAENFTNIR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L   D+++SV    ++ +++++T+ G  ++F    +R   GR++VGVR I L
Sbjct: 632 RNGIIAISLKDWDKLISVRQIDKDEELIISTQNGMTIQFNTKDVRSM-GRSAVGVRAIRL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D V+SM I                                                 
Sbjct: 691 DKDDAVVSMNI------------------------------------------------- 701

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               K +E ++L V+E GFGK+TS  +F+  NR GKG+R   VS+  + G +V   PV+ 
Sbjct: 702 ----KGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSE--KTGKVVDTLPVDL 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSV 894
           +  I++VS KG +IR+   ++    R T GV + + A +E  +VSV
Sbjct: 756 DTDIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLASEEDAIVSV 801


>gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
 gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
          Length = 915

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/923 (42%), Positives = 566/923 (61%), Gaps = 46/923 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+D +  K   +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   
Sbjct: 4   SNDHQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELKNN 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGSVDGD  A
Sbjct: 64  WNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDAAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K AH +L D+ ++TV+F  NYDGS QEP+VL  R+P +LVNG  GIAVGM
Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL + +  C+ ++  P+ D++ L++II+ PDFPTGA I G TG++  Y TGRG
Sbjct: 184 ATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIYGLTGVRAGYQTGRG 243

Query: 247 SIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +VIR  +H+E    SG+RE I+V EIPYQVNKA ++EKI ELVREK I  IA+LRDESD
Sbjct: 244 RVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDESD 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIELKR  +A+VILNQLY+ T LQ  F +NMVAL   +P    L  IL  F+  
Sbjct: 304 KDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQPRLLNLKQILSEFLRH 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT + L KAR   H+  G A+A++N+DE++ +I+ S + E AR  L+ R+W +
Sbjct: 364 RREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRAWQS 423

Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           S + +++   D             +  + +DG  +LS+ Q RAIL + L  LTGL +D+I
Sbjct: 424 SLVSEMLGRSDLDLTQARPEWLPENRGLQADG-YWLSDEQARAILRMSLRNLTGLDQDEI 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDC 532
             E   L   I + LDIL+   R+  II+ EL+ +K +    RR+ I   G  D+ DED 
Sbjct: 483 VKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADEDL 542

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT++H GY+K  P S Y+AQRRGG+G+     +DEDF+  LFI +TH  ++ F
Sbjct: 543 IPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLMCF 602

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVV 649
           ++LG  +  KV+RLP G   +RG+ + N++ L++ E+++ I+P   FPE+E      YV 
Sbjct: 603 TNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVREFPENE------YVF 656

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           FAT  G V++ +LS F  ++  G  A+ L   D ++     +  +DI+L + LG+ +RF 
Sbjct: 657 FATALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKALRFN 716

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR--RLISG 767
                 +AG+          A  +    +   +  + D D      K  +  R     SG
Sbjct: 717 ----EYWAGKAD--------AADEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSG 764

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
               +   +N   V   ++++ C    L+   +LT +  G+GKRT   D+    + G+G 
Sbjct: 765 GLRGMRLPENGRIVSLLVAQKNC---GLQ---VLTATANGYGKRTPIDDYPRKGKGGQGN 818

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A +  + N  G LVA   V+ ND ++L++  G LIR  V ++R   R   GV + +  +
Sbjct: 819 IAINTGERN--GDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVKLINLDE 876

Query: 888 DERVVSVERIRESEIVDEAESTE 910
              +VS+E + ES+  D+A+ TE
Sbjct: 877 GTTLVSIEPVVESDDADDADETE 899


>gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEELDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDSS--DDAYLFFTTRHGIVKRTSIKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEHGRTAKGLPVVNLLKLDEDESIQTVINV-ESDSSDDA 609


>gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
 gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
          Length = 930

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/934 (40%), Positives = 548/934 (58%), Gaps = 101/934 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M  +  ++NK Y K
Sbjct: 3   ESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR  +++GQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+L+NG  GIAVGMATN+  H
Sbjct: 123 RMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  +NP I  + LM  I GPDFPTG +I GR GI +AY TG+G + +RG 
Sbjct: 183 NLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIYGRAGILDAYRTGKGRLHVRGR 242

Query: 254 SHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             IE  S      DRE+IV TE+PYQ NKA ++E+IAELVR+K+I  I+++RDESD+ G 
Sbjct: 243 YIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EV
Sbjct: 303 RIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKAR R H+L GL +A+AN+DE++  I+ S N   AR  L+   W +  + 
Sbjct: 363 VTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGSGSVV 422

Query: 429 DLI----------DLI--DDSSYTIG---SDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++          D I  +D     G   +  +  LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   L  EI     IL    +L+ II  E++ ++D     RRT I++  +D   ED I
Sbjct: 483 TEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+  Y AQ+RGGKG+S   M+++D +  L + STH +VL F+
Sbjct: 543 PEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE---------DESSWN 644
             G V+  + + +PI S  ARG+ L+N++ L+  E +TTI+P P+         + SS +
Sbjct: 603 DTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVEELSVKGETSSTD 662

Query: 645 NL-----------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
            L                 +V FAT +G V+R +L  F  I  +G IA+ L+  D+++S 
Sbjct: 663 ALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSA 722

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  +++L    G+ +RF  +  R   GR + GVRG+ L   + + S+ +       
Sbjct: 723 RITNGSQEVMLFASSGKAIRFNENDARAM-GRTAKGVRGMRLTADEFIKSLVV------- 774

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                            +E ++ E            IL   E G
Sbjct: 775 ---------------------------------IEDDVRE------------ILIACENG 789

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           FGKRT   +F   NR G G+ A   S  N  G LV    V   D IIL+SDKGTL+R PV
Sbjct: 790 FGKRTFIDEFNTQNRGGGGVIAIKTSARN--GELVRATKVEPEDDIILISDKGTLVRTPV 847

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             +  + R T+GV +   +KDE++V++ R+   E
Sbjct: 848 QHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEE 881


>gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6]
 gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585]
 gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B]
 gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585]
 gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570]
 gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545]
          Length = 822

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
 gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
          Length = 845

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/906 (41%), Positives = 556/906 (61%), Gaps = 89/906 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN DID+D LM  I+ PDFPTG  I G +G+++AY TGRG +V+
Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+
Sbjct: 242 RAKTEIE-SHPTHDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R EVV+
Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIRLFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ+RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FQLTEVQSRAIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++      +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LTNEELCKKVIKDELIEVKEKYGDQRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQHRGGVGSKGSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M             IC                     +KN         
Sbjct: 694 LDEDGTDEVIGM-------------IC---------------------IKNP-------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +E+ I+ +SE G+GKR+   D+R +NR GKG++   +++  + G LVA+  
Sbjct: 712 ---------QEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITE--KTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEI 902
           V D + +++++  G  IR+ V  +RI  RAT+GV +    K ++++ SV ++    E E 
Sbjct: 761 VTDENDLMIINKSGITIRLHVASVRIMGRATQGVRLIDLEKRNDQIGSVCKVTSESEEEN 820

Query: 903 VDEAES 908
           VD  +S
Sbjct: 821 VDNEDS 826


>gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
          Length = 921

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/914 (41%), Positives = 556/914 (60%), Gaps = 34/914 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGK- 713

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 AIR        G      A  +  IS  +     AD +  +   KH   +    
Sbjct: 714 ------AIRFNEYWEKSGNDEAEDADIETEISDDLE-DETADNENALPSGKH-GVRPSGR 765

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                    L  D  +   I+     E    +  +LT +  G+GKRT   D+   N+ G+
Sbjct: 766 GSGGLRGMRLPADGKIVSLIT--FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + + 
Sbjct: 824 GNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINL 881

Query: 886 AKDERVVSVERIRE 899
            + E++VS+ER+ E
Sbjct: 882 DEGEQLVSLERVAE 895



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 42/240 (17%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D +      S    ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVE 688
            +++ F   E++ ++L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L   
Sbjct: 782 VSLITFAP-EAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAA 840

Query: 689 TCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           T   E +D++L T  G  +R  +  IR   GR + GVR I+L +G+Q++S+  V     D
Sbjct: 841 TLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGEQLVSLERVAEEPED 899



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESS 642
            + + KV ++       R  A + +++L++GE++ +   +   PED S+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGEQLVSLERVAEEPEDASA 902


>gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 832

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/884 (42%), Positives = 547/884 (61%), Gaps = 86/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+N YL YA++VI+GRA+PD+RDGLKPVHRR L+ M  +    NK ++K A
Sbjct: 18  IAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALYAMYSLNNYHNKPFLKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ L RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 78  RVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFGSIDGDAAAAMRYTEIRM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +  +L DL KDTVD++PNYD S +EP VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 138 KKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++     +IDN D+ ++ LM+ I GPDFPT   I G  GIK+AY TGRG I IR    
Sbjct: 198 TEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSIHGTEGIKSAYHTGRGIIQIRAKVD 257

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE     +RE+IV+TE+PYQVNKA ++EKIA+LV  K I  I+D+RDES R+G RVVI+L
Sbjct: 258 IEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGISDIRDESSREGIRVVIDL 317

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G  A VI+N+LY+ T LQ  F +  ++++   P+   L  +L+ F+  R EVV+RRT 
Sbjct: 318 KKGEIASVIVNRLYKATQLQVSFGIIFLSISNGSPKVMNLKEMLECFIDHRREVVIRRTV 377

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++RAH+L GL +AV N+DEVV I++ S  P  A+ +L+ R              
Sbjct: 378 FELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKLISR-------------- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q++AIL++RL RLTGL RD I  +  ++  EI    +IL S 
Sbjct: 424 ------------FSLSEIQSQAILDMRLQRLTGLERDKIIADYEAIMKEIARLEEILGSE 471

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             + GIIK E   + +     RRT IV    +++ ED +  ED++VT++H GY+KR+ + 
Sbjct: 472 DLIRGIIKTEFQEINENYGDERRTAIVAKADEIQIEDLVKNEDVLVTITHKGYIKRMTMD 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q+RGGKG  G    DEDF TD+F  +TH+++LFF++ G V+ +KV+ +P G+  A+
Sbjct: 532 TYRTQKRGGKGVKGASNADEDFFTDIFTANTHSTILFFTNRGSVFSKKVYNIPEGTRTAK 591

Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G+ + N++ +  G++I  IM   PEDE      Y++FAT+ G V+++ L+D+  I +SG 
Sbjct: 592 GRNIANLIPVPPGDKIKEIMCIPPEDEREGK--YLMFATEKGLVKKSALTDYNNIKQSGL 649

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+K+   D + SV       D+LL +  G+ +RF  S  R   GR S GV+GI++    
Sbjct: 650 RAIKVQDGDSVCSVRVSDGTKDVLLCSTSGKIIRFDESDARPM-GRVSQGVKGINI---- 704

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                        D DERI  M+ +                   D SVE           
Sbjct: 705 -------------DDDERIIGMELI-------------------DDSVE----------- 721

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 IL+++E G+GKRT++  +R   R GKGI A  ++  N  G +  + PV+D D +
Sbjct: 722 ------ILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKN--GEIKQIKPVSDKDDL 773

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++++DKG ++R  ++ I +  RAT+GV I    + E VVSVE+I
Sbjct: 774 MVITDKGQVVRTKISGISLMGRATQGVRIIKLKEGESVVSVEKI 817


>gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
 gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
          Length = 918

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/923 (41%), Positives = 564/923 (61%), Gaps = 38/923 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+++R +L++GQGNFGS+
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  +     +G +      I     D +   A      AD +  +   KH   +    
Sbjct: 715 IRF--NEYWEKSGNDEAEDADIETEISDDLEDEA------ADNENALPSGKH-GVRPSGR 765

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                    L  DS +   I+     E +  +  +LT +  G+GKRT   D+   N+ G+
Sbjct: 766 GSGGLRGMRLPVDSKIVSLIT--FSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G  A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + + 
Sbjct: 824 GNIAINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINL 881

Query: 886 AKDERVVSVERIRESEIVDEAES 908
            + E +VS+ER+ E    DE+ES
Sbjct: 882 DEGETLVSLERVAE----DESES 900



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 44/243 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRGSGGLRGMRLPVDSKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686
            +++ F PE E S  +L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+ ++++
Sbjct: 782 VSLITFSPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               ++ +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+  V   ++
Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEDES 898

Query: 747 DYD 749
           + D
Sbjct: 899 ESD 901


>gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDENIQTVINV-ESDRSDDA 609


>gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
 gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
          Length = 829

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/910 (41%), Positives = 557/910 (61%), Gaps = 91/910 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+IVV+E+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG  + +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I                                  L+ DS V    
Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RES 900
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  +      + 
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817

Query: 901 EIVDEAESTE 910
           E  DE E  E
Sbjct: 818 EATDEKEPVE 827


>gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39]
 gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
 gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A
 gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39]
 gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
          Length = 822

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
 gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
          Length = 871

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 538/891 (60%), Gaps = 90/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   IHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDI-----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN  +     D++ L+ I++GPDFPTGA+ILG TGI  AY TGRG I +
Sbjct: 189 REVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGTTGINEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +++IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DLRDESDRQG R+
Sbjct: 249 RAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDESDRQGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +V+LN LY++T +Q  F V M+AL   +P+   L  +L  ++  +++VV 
Sbjct: 309 CIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQPKVLNLQEMLGYYLDHQKDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N   A+  L++R          
Sbjct: 369 RRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++VQ +AI+++RL  LTGL R+ I  E   L   I E   I
Sbjct: 419 ----------------FSLTDVQAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+I++E+L + ++    RRT I     D+  ED I   + V+ ++ LGY+KR
Sbjct: 463 LADEKKLLGVIREEILLIAEKYGDERRTSIGFDEYDISMEDLIPVTNTVIAMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + L  +RAQ RGGKG  G+   DED++ +L + ++H  ++FF++ G VY+ K + +P   
Sbjct: 523 MSLDNFRAQNRGGKGIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L  GE+IT ++P  E        Y+  ATK+G V++  ++D+  + +
Sbjct: 583 RTARGTAIINLLQLQPGEKITAVIPIKEYTEGH---YLFMATKNGIVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    E DI L TK GQC+RF    +R   GR S+GV G++L 
Sbjct: 640 TGLAAITLREDDELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRS-TGRTSMGVIGMNLT 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V+ M +    DA                                            
Sbjct: 699 DGDKVVGMQMESQGDA-------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ VSEKG GK T + +F   NR GKG++   +++  + G +V V  VN +
Sbjct: 715 ---------LMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITE--KTGNIVGVKAVNQD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+++L++ +G +IR+ V++  +  R T GV + + A D  V S+ ++RE +
Sbjct: 764 DEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMNLADDVTVASIAKVREDK 814


>gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
          Length = 840

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/892 (40%), Positives = 554/892 (62%), Gaps = 87/892 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYTE RL+K    ++ 
Sbjct: 61  YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+PTHNL EV+D C+A
Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R  + IE T    +
Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMRAKAEIE-THTTHD 239

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+VI++KR A+A V+L
Sbjct: 240 KIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVVL 299

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+RRT+Y L KA++RA
Sbjct: 300 NKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQERA 359

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA  N+DEV+RIIR +  P  A   L++R                        
Sbjct: 360 HILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER------------------------ 395

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +ILS+      +IK E
Sbjct: 396 --FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDE 453

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR PLS +RAQ RGG 
Sbjct: 454 LVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGV 513

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+  A+G+A+ N+L++
Sbjct: 514 GSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNI 573

Query: 625 NQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +  + +T  +      D    N+ YV+F TK+G +++  L  + +  ++G  A+ +   D
Sbjct: 574 DSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 633

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAI 740
           +++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L +  GD+VI M  
Sbjct: 634 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTLDEDGGDEVIGMIC 692

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +   +A                                                   + I
Sbjct: 693 IKDPEA---------------------------------------------------ESI 701

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V D + +++++  G
Sbjct: 702 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSVTDENDLMIINKSG 759

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDEAESTE 910
             IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE  +T+
Sbjct: 760 ITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTD 811


>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 932

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/882 (41%), Positives = 537/882 (60%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K A
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL
Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK
Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y
Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DE++ IIR S   + A   + +R               
Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER--------------- 490

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ QT AILE+RL RLTGL    I +EL  L   I     +LS   
Sbjct: 491 -----------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQ 539

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+ELL VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ 
Sbjct: 540 LVHEIIKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG
Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A++N+L L +GE I+ ++    FP DE      Y++FAT+HG V++  +  + +  R G
Sbjct: 660 TAIVNLLPLEKGETISAVIATKDFPSDE------YLMFATEHGMVKKTSMDLYDRTRRDG 713

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D ++SV+       +L+ +  G+ + +    +R   GR+++GVRG+++   
Sbjct: 714 LIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPI 772

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +V+ M I   A  D D                                           
Sbjct: 773 AKVLGMEI---AQPDTD------------------------------------------- 786

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +  ++EKG+GKRT   ++   +R G+G+    ++   + G L  +  V ++D+
Sbjct: 787 -------LFVITEKGYGKRTPIAEYPEHHRGGQGVFT--ITMTEKKGLLAVMKIVAEDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I+++S++G  +R PV+ I    R+T+GV +  TA  +RV +V
Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAV 879


>gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4]
 gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae
           TIGR4]
 gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A
 gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4]
 gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375]
          Length = 822

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA]
 gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA]
 gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200]
 gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
          Length = 822

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
 gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
          Length = 865

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/893 (40%), Positives = 549/893 (61%), Gaps = 86/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  N+
Sbjct: 2   QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQDWSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 62  KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K +  +L DL K+TVDF+ N+D S QEP V+  + PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E VD   A IDN +I +D LM+ I  PDFPTG +I G  G+++A+ TGRG +V
Sbjct: 182 MAPHNLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGGIIYGYDGVRDAFHTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   + ++  G+R  I+VTEIPYQVNKA M+ + AELV++++I  I ++RDESDR+G R
Sbjct: 242 LRAKVNFDEI-GNRNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +PE+  L  I+  FV  R EV+
Sbjct: 301 IVYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVHGRPEQLNLKDIIHHFVEHRHEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVAN---LDEVVRIIRFSPNPETARRELMQRSWNASD 426
           VRRT++ L KA++RAH+L G    +     LD  + IIR S NP+ A+  L++       
Sbjct: 361 VRRTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIE------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AIL+LRLARLTG+  D IR+E +++  EI  
Sbjct: 414 -------------------AFELSDIQAQAILDLRLARLTGMELDKIRDEYDAIMKEIAN 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++  R   IIK+ELL +K++    RRT I     +M  ED I  E +V+T+SH G
Sbjct: 455 LEDILANEPRRFQIIKEELLEIKEKYGDERRTEIDYSGGEMSIEDIIPNESVVLTISHAG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS Y+ Q RGG G      RD DF+  +   + H  +LFF+  G  Y  +V+ +
Sbjct: 515 YIKRTSLSEYKIQSRGGVGNKAATTRDSDFLEYIVSATNHQYMLFFTEKGRCYWLRVFEI 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P GS  A+G+A+ N++++   ++I   +     +D    N + VV  TK+G +++  L  
Sbjct: 575 PEGSKTAKGRAVQNLINIEPDDKIKAYIRTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEA 634

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+++   D++L        + I++ TK G+C+RFP   +R   GR S+GV
Sbjct: 635 YSRPRVNGVNAIEIRDNDQLLGAYLTNGNSQIMIATKNGKCIRFPEEKVRE-VGRGSIGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD+ I M +V                                   ND      
Sbjct: 694 RGILLEDGDEAIGMIVV-----------------------------------ND------ 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     ++ + +L VSEKG+GKRT+  D+RI+NR GKG+   ++++  + G L+A+
Sbjct: 713 ----------VENETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLNITE--KTGNLIAI 760

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D D +++++  G  IR+ ++E+R+  R T+GV + +  K++ + ++ ++
Sbjct: 761 QNVTDEDGLMIINKSGVAIRMGMDEMRVMGRNTQGVKLINLKKNDEIAAIAKV 813


>gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
          Length = 819

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/893 (40%), Positives = 555/893 (62%), Gaps = 86/893 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +IDN D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G R +IVVTEIPYQVNK+ ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-RNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ +   E+I T++   + +      + V  T++G +++ ++S +  I + G
Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLGDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I++E
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDIIEE 810


>gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GFLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G I     ++L  +   ++T+S +G+ KR    +F    R G+G++ T V   + +  LV
Sbjct: 487 GQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 546

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRE 899
           +    + +D ++  ++KG + R+   +I    R  KG+ + +  K   DE + +V  + E
Sbjct: 547 S---TSTHDHLLFFTNKGRVYRLKGYDIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-E 602

Query: 900 SEIVDEA 906
           S+  D+A
Sbjct: 603 SDRSDDA 609


>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
 gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 853

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/888 (42%), Positives = 542/888 (61%), Gaps = 66/888 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +E+  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 10  IIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFRKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++A+YDAL RMAQD+S+R  LIEG GNFGS+D DPPAA RYTECRL
Sbjct: 70  RVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTECRL 129

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  A   LL D+ ++TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 130 QALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIPPHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG VA+I +P +    LM  I GPDFPTG  ILG+ GI+ AY TGRGS+ +R V+
Sbjct: 190 LGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHILGQGGIEEAYTTGRGSMTLRAVA 249

Query: 255 HIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE         RE I++TE+PYQ NKAA++EKIAELV EK+I  IADLRDESDR G RV
Sbjct: 250 TIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRDGIRV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQ  F  NM+A+   +P+  TL   L+ F+ FREE + 
Sbjct: 310 VIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGEPQLLTLKRSLEVFLRFREEAIA 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL +A+ANLD V+++IR + +   AR++LMQ           
Sbjct: 370 RRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQ----------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q  AIL+++L RLT L  + I  E   L  +I +  DI
Sbjct: 419 ---------------TYALSEAQADAILQMQLRRLTALEAEKIEREHAELQRQIADYRDI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+L II++E+  +K +  TPRR+RIV+   ++ D D I  +  V+ V+  GY+KR
Sbjct: 464 LAHRQRVLEIIEKEVTELKAKFATPRRSRIVQADGEISDIDLIANDKSVILVTQQGYIKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  + AQ R G+GR G  ++++D V   F  + H  +LFFS  G VY    +++P GS
Sbjct: 524 MPVDTFEAQSRDGRGRKGAEIKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGS 583

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            QARG  ++ +L + + E+IT+++    F EDE      Y+V  T+ G +++  L+ F  
Sbjct: 584 RQARGTPIVQLLPIPREEKITSVIAVQEFSEDE------YLVMLTRKGFIKKTPLAAFSH 637

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V    +++ I++ ++ G  + F  S  ++   GR + GV+ 
Sbjct: 638 IRSNGLIAISLEEGDQLRWVRRTREQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVKS 697

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L  GD+++ M I+  A A+                          +   D S E   S
Sbjct: 698 MNLRPGDELVGMDILPAAIAN-----------------------RFATPSEDDSGEIEDS 734

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           EE       +  ++L ++  G+GKR     FR+ NR+G GI AT     +    L A+  
Sbjct: 735 EETVAH--SEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNEDQLAALRI 792

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           VN  D++++V+ +G +IR  V +I   SR+  GV +    +D+ +V+ 
Sbjct: 793 VNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDAIVTA 840


>gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 554/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDENIQTVINV-ESDRSDDA 609


>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
 gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
          Length = 922

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/877 (42%), Positives = 536/877 (61%), Gaps = 91/877 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 85  EMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 144

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL + A  LL
Sbjct: 145 KYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELL 204

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP VL AR+PN+LVNG  GIAVGMATNIP HNL E V+   
Sbjct: 205 RDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAAC 264

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A+ID+P+I  D LM+II GPDFPTGAVI+G  GI  AY TGRGSI +R  +HIE T   R
Sbjct: 265 ALIDDPEITTDELMQIIPGPDFPTGAVIMGTEGIHKAYETGRGSITVRAKAHIESTKTGR 324

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPYQVNK ++ EKIA+LV EKR+  I+D+RDES  +G R+VIELK+G    V+
Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGVIPQVV 384

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY++TSLQS F +N +AL    P+  +L  +L  ++A + +VV RRT++ L KAR R
Sbjct: 385 LNNLYKFTSLQSTFGINNLALVEGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKARAR 444

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  IA+ ++DEV+ IIR S     A   L +R                       
Sbjct: 445 AHILEGYLIALDHIDEVISIIRSSETDAEASARLTER----------------------- 481

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 ++ QT AILE++L RLTGL R  I  EL++L   I+   D+L+ + ++L +IK+
Sbjct: 482 ---FGFTDRQTAAILEMKLRRLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKE 538

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +   PRRT I E   +++ ED I  EDMVVT++H GYVKR+P++ YR+Q+RGG
Sbjct: 539 EMREIARKFGDPRRTEIREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGG 598

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFS+ G VY+ KV  LP+GS QARG A++N+L 
Sbjct: 599 KGVSGVNLKEDDVIAEMFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLP 658

Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
             +GE+I +++    FP+DE      +++FAT+ G V++  +S + +  R G IA+ L +
Sbjct: 659 FEEGEKIASVISTRDFPDDE------FLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKT 712

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +L V     ++ I++ T  G+ + F    +R   GR++ GVRGI L    +V+ M  
Sbjct: 713 DDALLDVRRVRPQDKIIMATTEGKAIMFEQEQVRA-TGRDTSGVRGIDLRGSARVLGM-- 769

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                         EIT+ + D                     +
Sbjct: 770 ------------------------------EITNGQGD---------------------L 778

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
             ++E G+GKRT   D+   +R G+G+    +++    G L A+  V    ++ +++   
Sbjct: 779 FVITENGYGKRTPVRDYPTQHRGGQGVYTIQMTQRK--GMLAAMKTVGPQHELFIITKGA 836

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           T+IRV   EI    RAT+GV + + A  + V++V R+
Sbjct: 837 TVIRVKTGEISQTGRATQGVKMMNVADGDLVIAVARM 873


>gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 836

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/897 (43%), Positives = 542/897 (60%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+    ++ K A
Sbjct: 6   VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+  YHPH ++A+YDAL RM Q +SLR  L+EGQGNFGSVDGD  AA RYTE +L
Sbjct: 66  GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  +L D+ K+TVDF+PNYDG  QEPVVL A+ PN+LVNG  GIAVGMATNIP HNL
Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV DG + +IDNP+   D L+E+I+GPDFPTG VILGR GI+ AYATG+G +VIR  +H
Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVILGREGIRAAYATGKGRVVIRARTH 245

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE+   G+R QI+VTE+PYQVNKAA+LEKIAELV+  RI  I DLRDESDR G R+VIEL
Sbjct: 246 IEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           KR A    +LN L+++T LQ  F VNM+AL +G +P   TL  +L+ ++  R+EVV RRT
Sbjct: 306 KRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR RAH+L GL IA+ +LDEV++ IR S   E+AR  L+ R             
Sbjct: 366 EHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +EVQ  AIL+++L RL  L R  I NE   L  EI    ++L+ 
Sbjct: 413 -------------FGFTEVQANAILDMQLRRLAALERHKIENEYRDLLKEIAGLEELLAD 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++L +I++EL+ ++D+    RRT I +   ++ DED I    ++V +++ GYVKR+  
Sbjct: 460 PAKILAVIREELVQLRDKFGDERRTLIQDVSGEITDEDLIPDVSVLVMITNRGYVKRIAD 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGG+G +G+ +R+ED V  +    TH S+LFF+  G V++ KVW LP     A
Sbjct: 520 GTYRQQHRGGRGVTGMTLREEDGVHRIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTA 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  +IN++ +  GE IT ++P  +  S+    Y+   T++G V+R +L  F  +  SG 
Sbjct: 580 RGIPVINLIGIEPGETITALLPVRDFASAR---YLFMCTRNGRVKRTRLDQFASVRSSGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L+  DE+  V   +  ++++L T+ GQ +RF  + +R   GR + GV GI +  GD
Sbjct: 637 IAIGLEEGDELAWVRLTSGNDELILVTEQGQAIRFKETDVRPM-GRPAAGVIGIRMEPGD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI+ A V+  D D                                              
Sbjct: 696 RVIA-AEVVQPDQD---------------------------------------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L VS  G+GKRT+  +FR+  R G+G+ A  +++ N  G + A   V D D I
Sbjct: 709 ------LLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERN--GPVAAARVVTDTDSI 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +LVS +G +IRVP  +I    R T+GV I    + ++V SV  IR  E  + A+  E
Sbjct: 761 MLVSLRGMVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEE 817


>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
 gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
          Length = 796

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/881 (42%), Positives = 546/881 (61%), Gaps = 93/881 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +T+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + GV +++ Y K ARI 
Sbjct: 6   VDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSARIV 65

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+ AIYD + RMAQD+S+R  LI+GQGNFGSVDGDPPAA RYTE RL K 
Sbjct: 66  GDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLSKI 125

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDTVDF PNYDGS +EP VL +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 126 AGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLREV 185

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           V   + +I+NPD  +  LM  IRGPDFPTG  I+GR+GI++AY+TGRG+I IR  S IE+
Sbjct: 186 VYALIHLIENPDASVTDLMNFIRGPDFPTGGYIVGRSGIESAYSTGRGTITIRARSEIEE 245

Query: 259 TSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
             G R  +I+ TE+PYQVNKA ++E IAELV+  R+  I+++RDESDR+G R+V+ELK+G
Sbjct: 246 --GRRGSRIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELKQG 303

Query: 318 ASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            +  V+LNQL+++T L++ +  +N+V ++G +P   TL   L+ ++ +R EV+ RRT++ 
Sbjct: 304 VNPQVVLNQLHKHTQLETTYGIINLVLVDG-QPRTLTLKETLEQYINYRAEVIERRTRFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L +A  RAH+L G+ IA+ ++DEV+ +IR SP+P  AR  LM R                
Sbjct: 363 LEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNR---------------- 406

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q RAIL++RL RLTGL ++ + +E   L   I     IL+SR+ 
Sbjct: 407 ----------FGLSEEQARAILDMRLQRLTGLEQEKVASEARELESTIARLKGILASRTE 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L IIK EL  + +     RRT I+E +  +  ED I  E++ V +++ GY+KR PLSVY
Sbjct: 457 VLDIIKNELRELDEIYGDDRRTEILESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGGKG  G   + EDFVTD+F  ST   ++ F+  G  +  +V+ +P+ S  ARG+
Sbjct: 517 RMQRRGGKGSIGAETKSEDFVTDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGR 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + ++L L + ERIT  +P    ES   + Y+V AT++G++ +  L  F    R G  A+
Sbjct: 577 PIASLLQLEENERITEAIPV---ESFGTDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAV 633

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D +++        ++++ TK G+ +RF  S +R  +GR S+GV+ I+L++GD++I
Sbjct: 634 NLRG-DSLVAARLTDGSRELIVATKKGKAIRFHESDVR-SSGRGSMGVKAINLSEGDELI 691

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM +V   +                                                   
Sbjct: 692 SMDVVKEGET-------------------------------------------------- 701

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              + T++ +G+GKRT   ++ +  R GKG++  D  +    G +VA   V+D+D +++ 
Sbjct: 702 ---LFTITTQGYGKRTELSEYPLQRRGGKGVKNIDTRR----GDVVAAITVSDDDGLLIT 754

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +G +IR+  +++R+  RAT+GV I      + +  V R+
Sbjct: 755 TKEGVMIRIAASDVRVQGRATQGVKIMDVKPGDEISDVARV 795


>gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
 gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
          Length = 901

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/882 (41%), Positives = 546/882 (61%), Gaps = 93/882 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GE
Sbjct: 57  LSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSAWAVGE 116

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL ++A 
Sbjct: 117 VMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARLTRSAM 176

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L +L K+TVD +PNYD S  EP VL AR+PN+LVNG  GIAVGMATNIP HNLGEV D
Sbjct: 177 EMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNLGEVTD 236

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               +IDNP++  + LM ++ GPDFPTG +I+G  GIK+AY TGRGSI +R   H+E+  
Sbjct: 237 AVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVHVEQVK 296

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R+++VVTEIPYQVNK  + EKIA+ V EK+I  I+D+RDES+R+G R+VI+LKR A  
Sbjct: 297 SGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLKRDAVP 356

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY+ T LQS F +  +AL    P   +L  IL+ ++  + +VV RRT++ L+KA
Sbjct: 357 QVVLNNLYKKTQLQSNFGIIDLALVDGVPRTLSLREILRHYIDHQIDVVRRRTEFDLDKA 416

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + R H+L GL  AV N+DE+V IIR S +   A++ + +R                    
Sbjct: 417 QKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNER-------------------- 456

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L E+Q  AIL++RL RLTGL R D+ +E++ L ++I    D+L+   ++L +
Sbjct: 457 ------FGLDEIQGEAILQMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAV 510

Query: 501 IKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I  EL  + +     RRT+I E  + +++ ED I  EDMVVTV+H GYVKRVP+ +YR+Q
Sbjct: 511 IADELREISNRYADKRRTQISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQ 570

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG  GV +++ DFV +LF+ STH  VLFF++LG VY+ KV  LP+GS   +G A+I
Sbjct: 571 KRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAII 630

Query: 620 NIL-SLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           N++ +L +GE++  ++    FPED       Y++FATK G V++  +S++ +  + G IA
Sbjct: 631 NVIETLAEGEKVKAVITTRDFPEDN------YLMFATKQGMVKKTAMSEYDRTRKDGLIA 684

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE+++V      + ++L +  G+ + F  +  R   GR + GVRGI+L     +
Sbjct: 685 INLKDGDELVNVRRVHPGDKVVLCSSDGKAILFDEAEARSM-GRGTSGVRGITLKGNATM 743

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + M                                EIT+   D                 
Sbjct: 744 LGM--------------------------------EITNGNGD----------------- 754

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +  ++EKG+GKRT+  ++ +  R G+G+    ++   + G LVA   V    +I++
Sbjct: 755 ----LFVITEKGYGKRTAISEYPVHKRGGQGVFT--ITMTEKKGNLVACRVVGPQHEIMI 808

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +S++G +IRV   +I    R+T+GV + + +  + V +V R+
Sbjct: 809 MSEEGVVIRVKAGDISKLGRSTQGVKVMNLSGSDVVSAVARM 850


>gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
          Length = 841

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 21  QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 81  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 653 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 712 EGDTVVGASLI----TDQDE---------------------------------------- 727

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 728 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 827



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 523 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 579

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 580 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 628


>gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
          Length = 869

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/905 (41%), Positives = 561/905 (61%), Gaps = 91/905 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K A
Sbjct: 7   IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNG  GIAVGMATN+PTHNL
Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNL 186

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+DGC+A ID   ++++  LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++RG +
Sbjct: 187 SEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE T G+ E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+V+++
Sbjct: 247 EIE-TEGNHEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRIVVDV 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A++ V+LN+LY+ T+LQS FSVN +AL   +P +  L  ++KAFV  R EVV+RRTK
Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRQLNLKDLIKAFVDHRHEVVIRRTK 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA  N+DEV+ II+ S +P  A   LM+R              
Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q+RAI+E+RL +LTGL +D +R E   +   I    +IL + 
Sbjct: 412 ------------FSLSEIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILEND 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +IK EL  +KD+    R+T IV    ++  ED    ++M++T+SH+GY+KR PLS
Sbjct: 460 DLCMKVIKDELKEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGG G  G   RDEDFV  ++  S H ++L F++ G  Y  KV+ +P G+  ++
Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSK 579

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+A+ N+L++   +++     +     D    N+ Y++F TK G +++  L  + +  ++
Sbjct: 580 GRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-- 729
           G  A+ L   D ++ V      N++L+  + G+ +RF  +A+RV  GR + GVRG++L  
Sbjct: 640 GVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGMTLDD 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M                                                   
Sbjct: 699 DPNDEVVGMV-------------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C + K KE  +L VSE+G+GKR++  D+RI+NR GKG++  ++++  + G LVA+  V +
Sbjct: 709 CIKDKEKET-VLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVTE 765

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVDE 905
            + I++++  G  IR+ V+++ +  RAT+GV + +  K ++ + SV ++    E EI +E
Sbjct: 766 ENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEE 825

Query: 906 AESTE 910
               E
Sbjct: 826 KAQRE 830


>gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
          Length = 830

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/901 (42%), Positives = 550/901 (61%), Gaps = 87/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y
Sbjct: 3   ERSSVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +LI+G GNFGSVDGD  AA RYT
Sbjct: 63  KKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EARMSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H LGE++DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TGRGSI +R
Sbjct: 183 PHQLGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQILGRSGIRRAYETGRGSITVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE     RE I+V E+PYQVNKA ++EKIA+LVR+K+I  I+DLRDESDR G R+V
Sbjct: 243 AKVEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+K+ A+A+V+LN LY+ TSLQ+ F +N++AL   +P+   L   L  ++  ++ V+ R
Sbjct: 303 MEVKKDANANVLLNNLYKQTSLQTSFGINLLALVNGEPKVLNLKQCLYYYLEHQKVVIKR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA  RAH+L GL IA+ +LD V+ +IR S   + AR  LM             
Sbjct: 363 RTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTE----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I  E   L   I E   IL
Sbjct: 412 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYQGLMQLIAELKAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   ++L II++EL  VK+  +  RRT I V G  ++EDED I R+++V+T++H GY+KR
Sbjct: 457 ADEEKVLEIIREELTEVKERFNDTRRTEIMVGGFENIEDEDLIPRQNVVITLTHNGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS YR+QRRGG+G  G+   + DFV  L   STH ++LFF++ G VY+ K + +P  S
Sbjct: 517 LPLSTYRSQRRGGRGIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEFS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L + +GE +  I+P  +    W   Y+ F TKHG  +R+ LS F  I +
Sbjct: 577 RTAKGIPIINLLEVEKGEWVNAIIPVEDFVDDW---YLFFTTKHGISKRSPLSQFANIRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ L   DE++SV+      ++++ TK G  +RF  + +R   GR + GV+GIS++
Sbjct: 634 GGLIALGLRESDELISVKLTDGTKEMIIGTKKGMLIRFHETDVRSM-GRTATGVKGISIS 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M ++       DE +                 + +   KN         E R 
Sbjct: 693 ENDEVVGMELL-------DEGL-----------------DVLVVTKNGYGKRTPAEEYRV 728

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q            S  G G +T +    I++R+G+               LV+V  V   
Sbjct: 729 Q------------SRGGKGIKTCN----ITDRNGE---------------LVSVKTVTTE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAEST 909
           + ++L++  G LIR+ V+ I    R T+GV +   A++E V +V R+ +E E  D  E T
Sbjct: 758 EDLMLITASGVLIRMSVDGISQMGRNTQGVKLIRLAENEFVTTVARVDKEEEPEDGTEDT 817

Query: 910 E 910
           E
Sbjct: 818 E 818


>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/887 (42%), Positives = 548/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P P+ DES      +VF T++G ++R  L++F  I  
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 I    V+ AD                                       IS E 
Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807


>gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
 gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
          Length = 932

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/882 (41%), Positives = 538/882 (60%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K A
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK
Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y
Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DEV+ IIR S   + A   + +R               
Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER--------------- 490

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ QT AILE+RL RLTGL    I +EL  L  +I     +LS   
Sbjct: 491 -----------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQ 539

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+EL  VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ 
Sbjct: 540 LVHDIIKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG
Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A++N+L L +GE I+ ++    FP DE      Y++FAT+HG V++  +  + +  R G
Sbjct: 660 TAIVNLLPLEKGETISAVIATKDFPSDE------YLMFATEHGMVKKTSMDLYDRTRRDG 713

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D ++SV+       +L+ +  G+ + +    +R   GR+++GVRG+++   
Sbjct: 714 LIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPI 772

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +V+ M I   A  D D                                           
Sbjct: 773 AKVLGMEI---AQPDTD------------------------------------------- 786

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +  ++EKG+GKRT   ++   +R G+G+    ++   + G L  +  V ++D+
Sbjct: 787 -------LFVITEKGYGKRTPIAEYPEHHRGGQGVFT--ITMTEKKGLLAVMKIVAEDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I+++S++G  +R PV+ I    R+T+GV +  TA  +RV +V
Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAV 879


>gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
 gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
          Length = 833

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/893 (41%), Positives = 556/893 (62%), Gaps = 94/893 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCARI G+ MGK
Sbjct: 1   METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IY AL  MAQ+W+ R  L++G GNFGS DGD  AA RYTE RL K +  ++ 
Sbjct: 61  FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+F PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL E ++  V 
Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180

Query: 205 VIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +IDN      D  ++ +MEII+GPDFPTGA ILGR  I+ AY TGRG I  R VS IE  
Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATILGRKDIEQAYRTGRGKIKTRAVSEIETM 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              + +I+VTE+PY VNKA ++EKIA LV+EK++  I DLRDESD++G RVVIE++R A+
Sbjct: 241 DNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDAN 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+VILNQLY++T LQ  F V M+AL   +P+   L+ +L  ++  +++VV RRTK+ LNK
Sbjct: 301 ANVILNQLYKHTQLQDSFGVIMLALVDGEPKVLNLLQMLDEYLKHQKDVVTRRTKFELNK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +RAH++ GL IA+ N+DEV++IIR S     A++ L++R                   
Sbjct: 361 AEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIER------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LS+ Q++AI+++RL +LTGL R+D+  E   L  +I     IL+  ++LL 
Sbjct: 402 -------FGLSDAQSQAIVDMRLRQLTGLAREDLEAEYADLMAKIDYLKSILADENKLLT 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +IK+E+  ++D+    RRT+I   + D+ DED I  ED VV +++LGY+KR+ +  +++Q
Sbjct: 455 VIKEEIEVIRDKFGDERRTKIGINVGDLSDEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGGKG  G+   D+DF+ D+F+VSTH  +LF ++ G +YK K + +P     ARG A++
Sbjct: 515 NRGGKGIKGMQTIDKDFMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L  GE+I+ ++   E E    + Y++ ATK G +++  +  +  I +SG  A+ L 
Sbjct: 575 NLLQLQPGEKISAMVQMKEFEE---DKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLR 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE++ V      ++I+L TK GQ ++F  + +R   GR+++GVRGI L + D+VISM 
Sbjct: 632 EDDELIDVTISDNNDNIMLITKKGQGIKFRETDVRE-TGRSAMGVRGIELNQDDEVISMQ 690

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +                                             S+  C         
Sbjct: 691 LE--------------------------------------------SQGEC--------- 697

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS  G GKRT   DF++ NR GKG++   +S  ++ G +V    VND ++I++++++
Sbjct: 698 VLIVSANGMGKRTPFTDFKLQNRGGKGVKCYKIS--DKTGEVVGAKAVNDGNEIMMITNE 755

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTA-KDERVV-SVERIRESEIVDEAESTE 910
           G +IR+ V++I I  R T GV + +T  KD+ VV S+ +++ES  V EA++ E
Sbjct: 756 GIVIRMFVDDISILGRVTLGVKLMNTGDKDDIVVASITKVKES--VTEADALE 806


>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
 gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
          Length = 884

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/877 (43%), Positives = 548/877 (62%), Gaps = 59/877 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   EERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+R  LI G GNFGS+D DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMRYTE 124

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL+   +  +L D+  +TV+F  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VDG VA+I NP+I    LM+ I GPDFPTGA ILGR+GI+ AY TG+GSI +R
Sbjct: 185 PHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKILGRSGIREAYTTGQGSITMR 244

Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE    +   +RE I++T++PYQ NKAA++EKIAE+V +KRI  I+D+RDESDRQG
Sbjct: 245 GVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRQG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A   V+LN LY+ T LQS F  NM+AL   +PER TL   LK F+ FR E
Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPERLTLSRYLKVFLEFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA++R H+L GL IA+ NLD ++ +IR + +  TA++EL++R       
Sbjct: 365 TIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L    I+ E   L   I + 
Sbjct: 418 -------------------FELSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ E + +K+   +PRRT I     ++ED D I  E  ++ V+  GY
Sbjct: 459 QDILARRERILDIIESEAIELKERHGSPRRTEIEHTEGELEDTDLIANEKAIILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D +        H S+LFFS  G VY  K +++P
Sbjct: 519 IKRMPVNTFDAQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           + S  ARG  ++ +L + + ERIT+++P   F +DE      Y+V  TK G +++ +LS 
Sbjct: 579 VASRTARGVPIVQMLPIPKQERITSVVPVSEFSDDE------YLVMLTKGGYIKKTELSA 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
           F  I  +G IA+ L   DE+  V     ++ I++ ++LG  + F     ++   GR + G
Sbjct: 633 FSNIRANGLIAISLGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRG 692

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L K D++ISM I+  A             +S+  +L S +T +I   +   +   
Sbjct: 693 VKSMKLGKKDELISMDILPSA------------IVSSIAQLESEET-DIEDEEVLETETE 739

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             + E  QEL      I+ ++  G+GKR     FR+ NR+GKGI AT   +      +V 
Sbjct: 740 ETTVENNQELA-----IMVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVG 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  VN++++++L++ +G +IR  VN I   SR+  GV
Sbjct: 795 LQVVNEDNELMLITSRGIIIRQAVNAIPTQSRSATGV 831


>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
 gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
          Length = 860

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/887 (42%), Positives = 548/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P P+ DES      +VF T++G ++R  L++F  I  
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 I    V+ AD                                       IS E 
Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807


>gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/877 (43%), Positives = 533/877 (60%), Gaps = 86/877 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+GM +MG+  N KY K A I 
Sbjct: 17  ISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNAKYRKSAGIV 76

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+  YHPHG++A+YDAL RM Q +++R  LI+GQGNFGSVDGD  AA RYTE RL   
Sbjct: 77  GEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMRYTEARLAPI 136

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K TVDF PNYD S +EP VL AR PN+LVNG  GIAVGMATNIP HNLGEV
Sbjct: 137 AEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATNIPPHNLGEV 196

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  V +IDNP+  ++ L+E + GPDFPTG +ILGR GI  AYATGRG IV+R  +HIE+
Sbjct: 197 VDALVYLIDNPEATVEELVERLPGPDFPTGGIILGREGILAAYATGRGRIVVRARAHIEE 256

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           T   R  I+VTE+PYQVNKAA++E+IAELV+  R+  I DLRDESDR G R+VIELKR A
Sbjct: 257 TGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMRIVIELKRDA 316

Query: 319 SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
               +LN L+++T LQ+ F VNM+AL +G  P   TL  +L+ ++  R++V+ RRT++ L
Sbjct: 317 QPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQVIRRRTEFDL 376

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            +A  RAHVL GL IA+ +LDEV+  IR + + E AR++LM R                 
Sbjct: 377 RQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLMAR----------------- 419

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+E+Q  AIL+++L RL  L R  I +E   L   I E   +L+  +++
Sbjct: 420 ---------FNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKI 470

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L ++++ELL +K+    PRRT+I E   ++ DED + R D++VT++  GYVKR     +R
Sbjct: 471 LAVVRKELLELKERYGDPRRTQIQEASSEISDEDLVPRVDVIVTLTSRGYVKRSTNGHFR 530

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG+G +G+ +RDED +  + + STH S+LFF++ G V++   + LP     ARG  
Sbjct: 531 VQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARGLP 590

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N L+L  GE +TT++P   D S+   L+  F T+ G V+R +L +F  +  SG IAM 
Sbjct: 591 IVNFLNLQPGEEVTTLLPV-RDFSTATFLF--FCTRQGRVKRVRLEEFSNVRASGLIAMS 647

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD+ DE+  V   +  ++++L T  GQ +RFP   +R   GR + GV G+ L +GD VI+
Sbjct: 648 LDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPM-GRQAGGVIGVRLDEGDAVIA 706

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             +V                                        EG++            
Sbjct: 707 AEVV--------------------------------------RPEGDL------------ 716

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
              L VS+ G+GKRTS  +FR   R G G+ A  V+     G + A     + D ++LVS
Sbjct: 717 ---LLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTP--RTGHVAAATVAREEDTVVLVS 771

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +G +I VPV +I    R T+GV +    + + V SV
Sbjct: 772 RRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASV 808


>gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 853

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/909 (41%), Positives = 555/909 (61%), Gaps = 99/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID     N +  ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  I DL D+S R+G R+
Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++  +EEVV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R          
Sbjct: 369 RRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ +AI+++RL  LTGL R+ +  E   L  +I+E   I
Sbjct: 419 ----------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+I++E+L + ++    RRT I     D+  ED I RE++V+TV+++GY+KR
Sbjct: 463 LADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVTNMGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ G VY+ K + +P   
Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT  +P  E E      Y+  ATK G V++  + D++ + +
Sbjct: 583 RTARGTAVINLLQLMPDEKITATIPIKEYEDGK---YLFMATKKGLVKKTPIQDYMNVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D ++ V+      DILL TK GQC+RF    +R   GR S+GVRG++L+
Sbjct: 640 TGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D++I M                   MS+Q +                           
Sbjct: 699 DNDEIIGM------------------QMSSQGK--------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRTS  +F   NR GKG++   +++  + G +V +  V++ 
Sbjct: 714 --------DMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE--KTGNVVGMKAVDEE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---------ESE 901
            +I++++ +G +IR+  ++I    R T GV + +  + ERV SV ++R         E E
Sbjct: 764 SEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAKVRTASAEIDGEEVE 823

Query: 902 IVDEAESTE 910
           I +E +S E
Sbjct: 824 IKEEDDSPE 832


>gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
 gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
          Length = 829

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/910 (41%), Positives = 557/910 (61%), Gaps = 91/910 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+IVV+E+PY VNK+ +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG  + +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I                                  L+ DS V    
Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RES 900
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  +      + 
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817

Query: 901 EIVDEAESTE 910
           E  DE E  E
Sbjct: 818 EATDEKEPVE 827


>gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
          Length = 834

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/889 (40%), Positives = 551/889 (61%), Gaps = 90/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+DG V +IDN      D  L+ ++++I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 KEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGTHGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D S+R+G R+
Sbjct: 249 RAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LK+ A+A+V+LNQLY++T LQ  F V M+AL   +P+   L+ +LK ++A +EEVV 
Sbjct: 309 CIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALINNQPKIMNLLEMLKHYLAHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA++RAH+L GL  A+ N+DEV+RIIR +  P+TA+ +LM+R          
Sbjct: 369 RRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ +AI+++RL  LTGL R+ +  E   L  +I++   I
Sbjct: 419 ----------------FGLTEVQAQAIIDMRLRALTGLEREKLEAEYAELMEKIRKYKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R+ LL ++++E+L + ++    RRT+I     D+  ED I +++ V+T++ LGY+KR
Sbjct: 463 LADRNLLLRVVREEILLISEKYGDDRRTQIGFDEFDISMEDLIPKQNTVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGGKG  G+   + D++ +L + +TH  ++FF++ G VY+ K + +P   
Sbjct: 523 MTVDNFRSQNRGGKGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L  GE+IT ++P  + E      Y++  TK G V+R  + D+  + +
Sbjct: 583 RTARGTAIINLLQLAPGEKITAVIPLNKFEEGK---YLMMVTKKGLVKRTPILDYEHVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    +  I+L TK G C+RF  + +R   GR S+GVRG++L+
Sbjct: 640 TGLAAIVLRDEDELIEVKYTDNKKHIILVTKEGMCIRFKENDVRS-TGRVSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+ M +    D                                             
Sbjct: 699 DSDEVVGMQLDTQGDC-------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRTS  +F   NR GKG++   +++  + G ++ V  VN+ 
Sbjct: 715 ---------LLFVSEKGMGKRTSISEFTCQNRGGKGVKCYKITE--KTGNVIGVKAVNEE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++++++ +G +IR+  ++I +  R T GV + +  +  +V SV ++RE
Sbjct: 764 NEVMMITTEGIIIRLQCSDISMLGRITSGVKLINLDEGVKVASVAKVRE 812


>gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
 gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
          Length = 853

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/909 (41%), Positives = 555/909 (61%), Gaps = 99/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID     N +  ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  I DL D+S R+G R+
Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++  +EEVV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R          
Sbjct: 369 RRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ +AI+++RL  LTGL R+ +  E   L  +I+E   I
Sbjct: 419 ----------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+I++E+L + ++    RRT I     D+  ED I RE++V+TV+++GY+KR
Sbjct: 463 LADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVTNMGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ G VY+ K + +P   
Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT  +P  E E      Y+  ATK G V++  + D++ + +
Sbjct: 583 RTARGTAVINLLQLMPDEKITATIPIKEYEDGK---YLFMATKKGLVKKTPIQDYMNVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D ++ V+      DILL TK GQC+RF    +R   GR S+GVRG++L+
Sbjct: 640 TGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D++I M                   MS+Q +                           
Sbjct: 699 DNDEIIGM------------------QMSSQGK--------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRTS  +F   NR GKG++   +++  + G +V +  V++ 
Sbjct: 714 --------DMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE--KTGNVVGMKAVDEE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---------ESE 901
            +I++++ +G +IR+  ++I    R T GV + +  + ERV SV ++R         E E
Sbjct: 764 SEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAKVRTASAEIDGEEVE 823

Query: 902 IVDEAESTE 910
           I +E +S E
Sbjct: 824 IKEEDDSPE 832


>gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 841

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 21  QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 81  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 653 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 712 EGDTVVGASLI----TDQDE---------------------------------------- 727

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 728 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 827



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 523 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 579

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 580 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 628


>gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 822

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G I     ++L  +   ++T+S +G+ KR    +F    R G+G++ T V   + +  LV
Sbjct: 487 GQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 546

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRE 899
           +    + +D ++  ++KG + R+   EI    R  KG+ + +  K   DE + +V  + E
Sbjct: 547 S---TSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-E 602

Query: 900 SEIVDEA 906
           S+  D+A
Sbjct: 603 SDRSDDA 609


>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
 gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
          Length = 852

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/894 (42%), Positives = 553/894 (61%), Gaps = 92/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ERPSSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  GYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  LL DL K+TVD+R NYDG  +EP+VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESKMSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ DNP I  + LME I GPDFPTG +ILGR+GI+ AY TG+GS++
Sbjct: 183 IPPHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVL 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR V  IE     +E I+V EIP+QVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 IRSVVDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R ASA V+LN LY+ T++Q+ F +NM+AL   +P+  +L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++D ++ +IR S   E AR  LM   +N      
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMT-DFN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q++AIL++RL RLTGL RD I  E  +L   I+E   
Sbjct: 416 -------------------LTERQSQAILDMRLQRLTGLERDKIEEEYQALVKLIEELRY 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L IIK+E+L +KD     RRT I  G  +M EDED I  E  V+T++H GY+
Sbjct: 457 ILANEYRILEIIKEEMLEIKDRFSDKRRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY++K +++P 
Sbjct: 517 KRLPANTYRSQKRGGRGVQGMGTNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
               A+G  L+N+L +++ E++T ++    F ED       +  F T+ G  +R  ++++
Sbjct: 577 YGRTAKGLPLVNLLEISKEEKVTAVIRVKEFKEDS------FFFFTTREGLSKRTPVTNY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G IA+ L   DE++SV+      ++++ TK G  +RFP + IR   GR + GVR
Sbjct: 631 ANIRQNGLIAISLREEDELISVKLTDGTKEMVIGTKDGALIRFPETDIRSM-GRTASGVR 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+ M I+   D + +  +   K    Q       T+E              
Sbjct: 690 GIRLREGDAVVGMEIL---DPNDNVLVITEKGYGKQ-------TKE-------------- 725

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           SE R Q                             +R G GI+   ++  N  G LVAV 
Sbjct: 726 SEYRVQ-----------------------------SRGGMGIKTCQITDKN--GPLVAVR 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            VN  + I+L++  G LIR+ VN+I    R+T+GV +     DE V +V ++++
Sbjct: 755 TVNGTEDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKK 808


>gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
 gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
          Length = 885

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/737 (48%), Positives = 495/737 (67%), Gaps = 20/737 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K A
Sbjct: 8   ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A+I +  I +D LM  + GPDFPTGA+I GR GI  AY TGRG I +R  + 
Sbjct: 188 REVVNACLALIGDAHISIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRARAE 247

Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +   EKT   R+ I+V EIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G RVVI
Sbjct: 248 VITDEKTG--RDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++G   DV+LN LY  TSLQ++F +NMVAL   +P    L  IL+AF+  R EVV RR
Sbjct: 306 ELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T +LL KAR+R HVL GLAIA+AN+D+V+ +++ SP+P  AR  L+   W   ++  +++
Sbjct: 366 TLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTSMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    D+     G  DG   LS  Q +AIL+LRL RLTGL  + +  E      EI
Sbjct: 426 RAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL  R RLL +I++EL  +  E    RRT I +   D+  ED I  ED VVT+SH
Sbjct: 486 ADLLDILQDRERLLAVIREELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y+ QRRGG G++ + ++DEDFV  L I +TH ++L F++LG VY  KV+
Sbjct: 546 GGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWIKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+    +RG+ ++N+L L++GER+T+I+P    E   ++ ++  AT  G V++  L+ 
Sbjct: 606 QIPVAGRSSRGRPMVNLLQLDEGERVTSILPL---EEHSDDRFIFMATAQGYVKKTDLAS 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           F    RS  +   +   D++L     T  N D++L +  G+  RF  SA+R   GR S G
Sbjct: 663 FAP--RSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAM-GRASRG 719

Query: 724 VRGISLAKGDQVISMAI 740
           VRGI+LA G ++IS+ +
Sbjct: 720 VRGINLADGHRMISLLV 736



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 123/324 (37%), Gaps = 78/324 (24%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
           PED        VV  +  G  +   L+++ Q+ R G   K A+ +   D +  +      
Sbjct: 536 PEDR-------VVTLSHGGYAKTQPLAEY-QVQRRGGMGKAALSVKDEDFVEHLLIANTH 587

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +L  T LG+     +  I V AGR+S G   ++L + D+   +  +L  +   D+R  
Sbjct: 588 DTLLCFTNLGKVYWIKVYQIPV-AGRSSRGRPMVNLLQLDEGERVTSILPLEEHSDDRFI 646

Query: 754 YMKHMSAQRRLISGDTEEITS---------LKNDSSVEGNISEERCQELKLKEQFILTVS 804
           +M   +AQ  +   D               L  D  + G    +  Q+       ++  S
Sbjct: 647 FMA--TAQGYVKKTDLASFAPRSAGLRAIVLGEDDVLVGTAITDGNQD-------VMLFS 697

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-------------------------- 838
            +G   R S    R   R+ +G+R  +++  + +                          
Sbjct: 698 SEGKATRFSESAVRAMGRASRGVRGINLADGHRMISLLVPDARGTVLTVSENGYGKRTTV 757

Query: 839 ----------------------GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
                                 G LV    V   D+++L+S++GTL+R   +++    R 
Sbjct: 758 DDFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRN 817

Query: 877 TKGVVIFSTAKDERVVSVERIRES 900
           T+GV I  T + E +V VERI +S
Sbjct: 818 TQGVRIIRTKEGETLVRVERIVDS 841



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK+  L+ +  +     G   +V+ ++D +    I   +  V+ FSS G     K  R
Sbjct: 653 GYVKKTDLASFAPR---SAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEG-----KATR 704

Query: 606 LPIGSPQARGKALINILSLN--QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
               + +A G+A   +  +N   G R+ +++  P+   +     V+  +++G  +R  + 
Sbjct: 705 FSESAVRAMGRASRGVRGINLADGHRMISLL-VPDARGT-----VLTVSENGYGKRTTVD 758

Query: 664 DFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           DF    R GK  IAM    R+  ++        ++++L +  G  VR     +    GRN
Sbjct: 759 DFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQL-GRN 817

Query: 721 SVGVRGISLAKGDQVI 736
           + GVR I   +G+ ++
Sbjct: 818 TQGVRIIRTKEGETLV 833


>gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis]
 gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
 gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
          Length = 846

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/889 (41%), Positives = 548/889 (61%), Gaps = 90/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + K A
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+D  V +IDN   D     ++ ++EII+GPDFPTG  ILG  GI+ AY TGRG I +
Sbjct: 189 REVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S R+G R+
Sbjct: 249 RAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++  +A+V+LNQLY++T LQ  F V M+AL G +P+   ++ +L  ++  +E+VV 
Sbjct: 309 VIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVGKQPKVMNILELLGYYLKHQEDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA++RAH+L GL IA+ N+DEV+RIIR S   + A+ ELM++          
Sbjct: 369 RRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEK---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L +VQ +AI+++RL  LTGL R+ +  E   L  +I+    I
Sbjct: 419 ----------------FELDDVQAQAIVDMRLRALTGLEREKLEKEYAELMAQIERLEAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LLG+I++E+L +KD+    RRT I     D+  ED I +E++V+T++ LGY+KR
Sbjct: 463 LADEKLLLGVIREEILVIKDKYGDDRRTSIGFDEYDISMEDLIPKENIVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ RGGKG  G+   DED+V +LF+ +TH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MSDDTFKAQNRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKGYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A+IN+L L  GE+IT ++P    +   +  Y++ ATK G V++  L +++ + +
Sbjct: 583 RTSRGTAIINLLQLMPGEKITAVIPI---DYYRDQDYLIMATKKGLVKKTSLREYMNVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+      +I+L TK GQC+RF  + +R   GRNS+GVRGI+LA
Sbjct: 640 TGLAAITLRDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRA-TGRNSMGVRGINLA 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                           D DE I                                      
Sbjct: 699 ----------------DRDEVIG------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +L  +   +L VSEKG GKRT  ++F   NR GKG++   +++  + G ++ +  V+++
Sbjct: 706 MQLVTQGHDLLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITE--KTGNVIGIKAVDED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D+I++++  G +IR+  + I +  R T GV + +    E V S+ ++R+
Sbjct: 764 DEIMIINTDGIIIRMLCSGISVLGRITSGVKLINLKDKETVASIAKVRD 812


>gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  N
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
          Length = 859

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/897 (41%), Positives = 550/897 (61%), Gaps = 86/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +  + ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQG R+V+++K
Sbjct: 252 IE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RR ++
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L  L  A  N+DEVVRIIR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          E+Q+RAI+++RL++LTGL  D +  E   L   IK+  +IL++  
Sbjct: 416 -----------FEFDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ 
Sbjct: 465 RCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+LSL  G+ +   +     +D+   ++ YVVFATK G V++  L  + +   +G 
Sbjct: 585 RAIQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ ++  DE++ V      N++++  + G+  RF  S IR   GR S GVRG+ L +  
Sbjct: 645 IAININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDEDG 703

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M +V                                   ND   E         
Sbjct: 704 QDEVVGMIVV-----------------------------------NDPVNE--------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LVA+  V D++
Sbjct: 720 -------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDN 770

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907
            +++++  G +IR+ V E R+  RAT+GV + + AK   V+ SV ++  SE+  + E
Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMESQVE 827


>gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
 gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
          Length = 826

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/896 (41%), Positives = 542/896 (60%), Gaps = 88/896 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K Y K A
Sbjct: 6   ILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TVDF  N+D S +EP VL A  PN+LVNG  GIAVGMATNIP HN+
Sbjct: 126 KAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIPPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV G +A+I+NP+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR  + 
Sbjct: 186 REVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAV 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR+G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT+
Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVLRRTQ 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LN A  RAH+L GL I + NLDEV+  IR SP+   A+  LM R              
Sbjct: 366 YDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDR-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q++AILE+RL RLTG+ R  I +E       I+E   IL S 
Sbjct: 412 ------------FGLTEAQSKAILEMRLQRLTGMERQKIDDEYRETLALIEELKSILESP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++ + IIK ELL V D     RRT +     D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 AKQMEIIKAELLKVSDVYGDERRTELRPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G +G   ++EDF+  +FI STH  +LFF++ G  Y  KV+ +P     AR
Sbjct: 520 GYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L NI+ L  GE+I T +     +      +++ AT  G V++  L ++    R+G  
Sbjct: 580 GRSLANIMELPPGEKIRTYINVRNFDDPH---FIIMATAKGIVKKTSLEEYSHPRRTGIN 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ +D  DE++       ++ I+L    G  VRFP S +R   GR ++GV+GI+L + ++
Sbjct: 637 AITIDEGDELIEARLTDGDHQIILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLDEDER 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ISM                                 +T+ +ND+S              
Sbjct: 696 CISM---------------------------------VTTKRNDTS-------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ G+GKR+   D+R++ R  +G+    +    +IG LV +  VND D +I
Sbjct: 709 -----LLAVTDNGYGKRSKVEDYRMTKRGARGV--ITIKAHEKIGNLVGLLDVNDEDDLI 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++  G +IR  V++IR+  R T GV +      +R+ +  R+ +S   D+  +TE
Sbjct: 762 IITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKS---DDDSATE 814


>gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
 gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
          Length = 822

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL  ++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDTYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.]
          Length = 848

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/893 (40%), Positives = 552/893 (61%), Gaps = 85/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  ++I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++    Y K A
Sbjct: 7   VIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GK+HPHG+ ++YD++ RMAQ+WS+R ++++GQGNFGSVDGD PAA RYTE R+
Sbjct: 67  RIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYTEVRM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK +  +L D+ KDTVD R N+D + QEP VL  R PN+LVNG  GIAVGMATN+  HNL
Sbjct: 127 QKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G +A I+N +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+R  + 
Sbjct: 187 TEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIYGYDGVRDAFHTGRGRIVMRAKAI 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+  G RE I+VTEIPYQVNKA M++K AELV +K+I  I+++RDESDR G R+V  LK
Sbjct: 247 VEEVKG-RECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIVYILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVRRT++
Sbjct: 306 RDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVRRTEF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA  N+DEV+  IR S N + AR +L+ R               
Sbjct: 366 DLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVR--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q +AI+E+RL +LTGL +D +R E +++ + I +  DIL++  
Sbjct: 411 -----------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDILANEP 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   IIK+EL  +KD+    RR+ I     DM  ED I    +VVT+S+ GY+KR  L  
Sbjct: 460 RRYDIIKEELAHIKDKYGDERRSIIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRTNLEE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G    +G
Sbjct: 520 YKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKG 579

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +   +G 
Sbjct: 580 RAMQNLINIEPDDKVKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
            A+ +   DE+L  +  T ++ ++L    G+ +RF  +  R   GR + GVRGI+L  + 
Sbjct: 640 NAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITLQHEN 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M  V                                   ND              
Sbjct: 699 DEVIGMVAV-----------------------------------NDM------------- 710

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  IL VSEKGFGKR+   D+R++NR GKG++  ++S+  + G LVA+  V+D++ 
Sbjct: 711 ----ESNILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISE--KTGNLVAIKNVDDSND 764

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++   E V+E
Sbjct: 765 LMIINKSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDVEE 817


>gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710]
 gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568]
 gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304]
 gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399]
 gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385]
 gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196]
          Length = 916

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
 gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
          Length = 820

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL +++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLREILGSYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV++IIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++ G +L +EDED I   ++++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSLEDEDLIEETNVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+   +D S   + Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDDGESIQTIINVAQDRSE--DAYLFFTTRSGLVKRTSVAEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  S +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  +++     D DE                                        
Sbjct: 693 PGDQVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  +V+  N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTRADEYPTKGRGGKGIKTANVADKN--GPLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++++++ G +IR  V  I    R+T GV +    +D ++V+   ++  E
Sbjct: 758 EDLMIITNTGVMIRTSVANISQTGRSTMGVKVMRLDQDAQIVTFTTVQADE 808



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 92/207 (44%), Gaps = 19/207 (9%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV--YKEKV 603
           G VKR  ++ +   R+   G   + ++DED + ++F+   +T V+  +  G+   +KE V
Sbjct: 618 GLVKRTSVAEFANIRQ--NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESV 675

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            R        R    +  ++L  G+++       + +       V+  T+ G  +R +  
Sbjct: 676 VR-----NMGRSATGVRGVNLRPGDQVVGASVITDQDE------VLIITEKGYGKRTRAD 724

Query: 664 DFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++    R GK    A   D    +  + T   + D+++ T  G  +R  ++ I    GR+
Sbjct: 725 EYPTKGRGGKGIKTANVADKNGPLAGLMTVKGDEDLMIITNTGVMIRTSVANISQ-TGRS 783

Query: 721 SVGVRGISLAKGDQVISMAIVLHADAD 747
           ++GV+ + L +  Q+++   V   + D
Sbjct: 784 TMGVKVMRLDQDAQIVTFTTVQADEKD 810


>gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 858

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/891 (40%), Positives = 554/891 (62%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM  +G   +  Y KCA
Sbjct: 7   IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPYKKCA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 67  RVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K   +++DDL KDTVD  PN+D +  EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 127 EKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDN +I+ + LM+ I+ PDFPTG  I G  G+K+AY TGRG +V+R  + 
Sbjct: 187 SEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRVVMRAKAE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +  ++++I++TEIPY VNK  ++E IA+LV+E ++  I++  DES RQG R+VI++K
Sbjct: 247 IE-SDENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIVIDVK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+L++ T+LQS FSVN +AL   +P   TL   +K FV  R +V +RRTK+
Sbjct: 306 RDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLTLKDCIKYFVEHRHDVTIRRTKF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L G+ IA  N+DEVV+II+ S  P  AR  L QR               
Sbjct: 366 ELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQR--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL+++TGL  +++  + + L   I     IL+  +
Sbjct: 411 -----------FNLDELQSQAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSILTDDN 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  +K++    RRT+I+    +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 460 LCKKVMKDELNELKEKFGDERRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  GV  R++DF   ++  + H ++LFF+  G  Y  K + +P G+  ++G
Sbjct: 520 FREQARGGVGSKGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKG 579

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+++  + +  I+     +DE   N+  VVFATK+G +++  L  + +   +G 
Sbjct: 580 RAIQNLLNIDPDDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPRANGV 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732
           IA+ +   DE++ V     +N+I++  K G+ VRF    +R   GR + GVRG+ L    
Sbjct: 640 IAINIAEGDEVVDVRLTNGKNEIIMANKNGRAVRFNEETVRAM-GRTATGVRGMKLDGDD 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQV+ M +V                                   ND+  E          
Sbjct: 699 DQVVGMIVV-----------------------------------NDAEAEN--------- 714

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++ VSE G+GKR+S  D+R++NR GKG++  ++++  + G +VA+  VND++ 
Sbjct: 715 -------VMVVSETGYGKRSSVEDYRVTNRGGKGVKTLNITE--KTGRVVAIKNVNDDND 765

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           +++++  G  IR+ V+E+R+  RAT+GV + + +K   V+ SV ++  SE+
Sbjct: 766 LMIINKSGITIRLAVSEVRVMGRATQGVRLINLSKKNDVIASVCKVMSSEL 816


>gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
 gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
          Length = 842

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/880 (40%), Positives = 543/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C++ IDN +ID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 AKAEIE-TGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YVVF TK+G V++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M             IC          +   DTE                 
Sbjct: 695 DEDGQDEVVGM-------------IC----------IKDPDTET---------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153]
          Length = 916

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013]
          Length = 916

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +  +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G I     ++L  +   ++T+S +G+ KR    +F    R G+G++ T V   + +  LV
Sbjct: 487 GQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 546

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRE 899
           +    + +D ++  ++KG + R+   EI    R  KG+ + +  K   DE + +V  + E
Sbjct: 547 S---TSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-E 602

Query: 900 SEIVDEA 906
           S+  D+A
Sbjct: 603 SDRSDDA 609


>gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031]
 gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031]
 gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104]
          Length = 822

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 920

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/912 (41%), Positives = 554/912 (60%), Gaps = 34/912 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGK- 713

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 AIR        G      A  +  IS  +     AD +  +   KH   +    
Sbjct: 714 ------AIRFNEYWEKSGNDEAEDADIETEISDDLE-DETADNENALPSGKH-GVRPSGR 765

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                    L  D  +   I+     E    +  +LT +  G+GKRT   D+   N+ G+
Sbjct: 766 GSGGLRGMRLPADGKIVSLIT--FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + + 
Sbjct: 824 GNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINL 881

Query: 886 AKDERVVSVERI 897
            + E +VS+ER+
Sbjct: 882 DEGETLVSLERV 893



 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 9/109 (8%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESS 642
            + + KV ++       R  A + +++L++GE + +   +   PEDES+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSLERVAKEPEDESN 902


>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
          Length = 841

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/897 (42%), Positives = 556/897 (61%), Gaps = 92/897 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE  E+ I  + I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K     GE +  +HPHG+AA+YD+L RMAQD+SLR  L++G GNFGS DGD  AA
Sbjct: 62  DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K +  +L D+ KDTVDF+PN+D    EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           TNIP HNLGE +DG  AV+DNP+I +D L M+ I+GPDFPT A I+G+ GI++AY TGRG
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKRGIRDAYKTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +++R  + IE+  G+R +IVVTEIPY VNKA ++EKIA+LV++K+I  I+ ++DES R+
Sbjct: 242 RLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGRE 301

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKA 360
              R+VI+LKR A+ +V+LNQLY+ T LQ  FSVNMVA+       Y+P    L  ++  
Sbjct: 302 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDY 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A +E+V+ RRTK+ L+KA  RAH+L GL IA+ NLDEV+RIIR S     A+ +L +R
Sbjct: 362 YIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSER 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q++AI+++RL RLTGL R+ + +E N L
Sbjct: 422 FG--------------------------FSDKQSQAIVDMRLGRLTGLEREKLESEYNEL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IK   D+L++   +  IIK EL  +K++    RRT+I     +++ ED I  ++ V+
Sbjct: 456 LEKIKYFRDVLANEILVHQIIKDELTVIKNKYADERRTKIEIDEDEIDIEDLIQEQESVI 515

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+P   Y++QRRGGKG  G+  R+EDFV +LF+ STH  ++FF++ G VY+
Sbjct: 516 TMTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYR 575

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P    QA+G A++N+L LN  E++TT++P  E +     LY+V ATK+G V++ 
Sbjct: 576 LKAYEIPESGRQAKGTAIVNLLQLNGDEKVTTVIPIQEYKEG---LYLVMATKNGLVKKT 632

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L ++  I + G  A+ L   DE++ V+      DI+L+T  G  +RF  +  R   GR 
Sbjct: 633 DLMEYDSIRKGGLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPI-GRV 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV+G+ L +GD +I M             +C               T+  T       
Sbjct: 692 SQGVKGMELDEGDFIIGM------------EVC---------------TDNTT------- 717

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L V+E GFGKRT   ++++  R GKG+    +++  + G 
Sbjct: 718 -------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGK 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + +  V+++D I+L+S  GT+IR+ VNEI I  RAT+GV +   ++   VVSV R+
Sbjct: 757 SIGMLLVSEDDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVARM 813


>gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
          Length = 809

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/887 (41%), Positives = 555/887 (62%), Gaps = 84/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S+ I +E++ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M  +G  +N+ Y K A
Sbjct: 2   LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+AA+YDAL RMAQD+++R  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 62  RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +   L D+ K TV+FR NYD +  EP VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV D  +A++D+P + LD L+  I+GPDFPT A++ GR G++ AYATGRGSI +R   H
Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMYGRQGMRQAYATGRGSIKLRSRLH 241

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E++   RE IV+TEIP+ +NKA+++EKIA+LV E ++  I+DLRDESDR G R+VI+LK
Sbjct: 242 VEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDLK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +D+++N LY+YT+L++ + +N++A+   +P+  +L  IL+ F+  R+EV++RR++Y
Sbjct: 302 RNTLSDIVINTLYKYTALETSYGINLLAVVNNRPQLLSLKQILELFLEHRKEVILRRSRY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ N+DEVVR+IR S  P  A+  LMQR               
Sbjct: 362 DLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ++AIL++RL RLT L RD +  E  ++   I+    I+    
Sbjct: 407 -----------FELSEVQSQAILDMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSE 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLS 554
            L G+++ EL  ++    +PRRT I+E   +  D ED I  E++V+T++  GY+KR PLS
Sbjct: 456 VLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDLIPDEEVVITLTRNGYIKRTPLS 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q+RGGKG SG  +  +DFVTDL   + H  +L F++ G +++ KV+++P G   AR
Sbjct: 516 AYQQQKRGGKGVSGANVAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTAR 575

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L++ E + T++   + +++ + L   FATK G V+R+ +  +      G I
Sbjct: 576 GTHIANLLPLDKEEYVATVLCMKDFDANHSFL---FATKKGMVKRSAVHLYRNYRPHGLI 632

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++V    +E++I L T  G  +RF  S +R   GR + GV+GI+L + D 
Sbjct: 633 AVNLRDGDELIAVREVDEESEIFLITHHGVAIRFACSEVRSM-GRGAAGVKGIALRQEDA 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S  I                        I+GD                          
Sbjct: 692 VVSCVI------------------------INGDG------------------------- 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            ++Q +LTVSE+G+GKRT+   +R  +R GKGI   ++   ++ G ++    V++ D++I
Sbjct: 703 -RDQ-LLTVSEQGYGKRTAIDYYRQQSRGGKGI--INMRLTSKTGGVLGAMMVDETDELI 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++    ++R+   +IRI  RAT+GV + S   +  VV  +RI   E
Sbjct: 759 MLTSMHKMLRIGTADIRICGRATQGVKLVSLDSEATVVCFDRIVSEE 805


>gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
 gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
          Length = 863

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 548/891 (61%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM  +G   +K Y KCA
Sbjct: 12  ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+DG+ +EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNPDID + LM  I+ PDFPTGA I G  G+K+AY TG+G +VIR  + 
Sbjct: 192 GEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGKGRVVIRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IVVTEIPY VNKA ++E IA+LV+E +I  I+++ DES RQG R+V+++K
Sbjct: 252 IE-SHESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDESGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   TL   +K FV  R +V +RRT++
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLTLKECVKYFVEHRHDVTIRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV +IR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  + +  E   L   I     IL    
Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAYLQSILDDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL +VK++    RRT I     +   ED    + +V+TVSHLGY+KR  LS 
Sbjct: 465 LCKKVMKDELQAVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTALSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   R+EDF   ++  + H ++LFF+  G  Y  K + +P G+  ++G
Sbjct: 525 FKEQARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEIPEGTKDSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+++  + +   +     +DE+  N+ YVVFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNMLNIDSDDSVNAFLRLKGLDDEAFLNSHYVVFATKNGVVKKTLLKAYSRPRANGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
            A+ +   DE+++V      N+++L  + G+ VRF   A+R   GR S GVRG+ L  G 
Sbjct: 645 NAINIVDGDEVVNVRLTNGSNELILANRNGRAVRFDEKAVRTM-GRVSTGVRGMRLDGGD 703

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M +V  AD                                               
Sbjct: 704 DEVVGMVVVNEAD----------------------------------------------- 716

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               ++ ++ VSE G+GKR+S  D+R +NR GKG++   ++  ++ G LV++  V D + 
Sbjct: 717 ----KESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVSIKNVTDEND 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902
           +++++  G  IR+ V+ +R+  RAT+GV +I  T K++ + SV ++  SE+
Sbjct: 771 LMIINKSGITIRLAVSNVRVMGRATQGVRLINLTKKNDVIASVCKVMSSEL 821


>gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1057]
          Length = 826

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/897 (41%), Positives = 554/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++   D                                             
Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAE 821


>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/887 (42%), Positives = 548/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P P+ DES      +VF T++G ++R  L++F  I  
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 I    V+ AD                                       IS E 
Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807


>gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301]
          Length = 822

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 829

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/889 (41%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG  + +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I                                  L+ DS V    
Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASI 806


>gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 853

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/909 (41%), Positives = 555/909 (61%), Gaps = 99/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID     N +  ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  I DL D+S R+G R+
Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++  +EEVV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R          
Sbjct: 369 RRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ +AI+++RL  LTGL R+ +  E   L  +I+E   I
Sbjct: 419 ----------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+I++E+L + ++    RRT I     D+  ED I RE++V+TV+++GY+KR
Sbjct: 463 LADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVTNMGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ G VY+ K + +P   
Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT  +P  E E      Y+  ATK G V++  + D++ + +
Sbjct: 583 RTARGTAVINLLQLMPDEKITATIPIKEYEDGK---YLFMATKKGLVKKTPIQDYMNVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D ++ V+      DILL TK GQC+RF    +R   GR S+GVRG++L+
Sbjct: 640 TGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D++I M                   MS+Q +                           
Sbjct: 699 DNDEIIGM------------------QMSSQGK--------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRTS  +F   NR GKG++   +++  + G +V +  V++ 
Sbjct: 714 --------DMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE--KTGNVVGMKAVDEE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---------ESE 901
            +I++++ +G +IR+  ++I    R T GV + +  + E+V SV ++R         E E
Sbjct: 764 SEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKEKVASVAKVRTASAEIDGEEVE 823

Query: 902 IVDEAESTE 910
           I +E +S E
Sbjct: 824 IKEEDDSPE 832


>gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868]
 gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868]
 gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 841

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/905 (40%), Positives = 551/905 (60%), Gaps = 86/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  NKK
Sbjct: 3   KEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 63  YLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K +  +L DL K+TVDF+ N+D S QEP VL  + PN+LVNG  GIAVGMATN+
Sbjct: 123 TEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E VD   A IDN +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+
Sbjct: 183 APHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+  G+R  I+VTEIPY VNKA M+ + +ELV+E +I  I ++RDESDR+G RV
Sbjct: 243 RAKVAFEEI-GNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +P++  L  I+  FV  R E+V+
Sbjct: 302 VYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           RRT+Y L KAR+RAH+L G    +A    LD+ + IIR S  P+ A+  L+         
Sbjct: 362 RRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLI--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS++Q +AIL+LRLARLTG+  D IR+E  ++   I + 
Sbjct: 413 -----------------AEFELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++ +R   IIK ELL VK++    RRT I     +M  ED I  E++V+T+SH GY
Sbjct: 456 EDILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  Y  +V+ +P
Sbjct: 516 IKRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDF 665
            GS  A+G+A+ N++++   ++I   +   +  D      +YVV  TK+G +++  L  +
Sbjct: 576 EGSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAY 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G  A+++   D++L        ++I++ TK G+C+RFP    R   GR S+GVR
Sbjct: 636 SRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARA-VGRTSIGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL   D+VI M +V                                   ND       
Sbjct: 695 GISLEDNDEVIGMIVV-----------------------------------ND------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                    ++ + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+ 
Sbjct: 713 ---------MENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQ 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D + +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++   + V++
Sbjct: 762 SVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVED 821

Query: 906 AESTE 910
            E  E
Sbjct: 822 EEIEE 826


>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
          Length = 822

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/881 (41%), Positives = 555/881 (62%), Gaps = 94/881 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + ++K Y K ARI G+
Sbjct: 19  IVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDKPYRKSARIVGD 78

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            MGKYHPHG+++IYDA+ R+AQD+S R  L++G GNFGS+DGD  AA RYTE ++ K   
Sbjct: 79  TMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMRYTEAKMTKMTG 138

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ K+TVD+ PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL EVVD
Sbjct: 139 EMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATNIPPHNLREVVD 198

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +A+I+NP+I+++ L++ ++GPDFPTG +I+G+TGI NAY TGRG I +R  +HIE+ S
Sbjct: 199 AIIALIENPNIEINDLIKYVKGPDFPTGGIIMGKTGIYNAYTTGRGRIKLRSKTHIEEIS 258

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R++IVVTEIPY VNKA M+EKIA+LVR+K++V I+D+RDESDR G RV I+L++  +A
Sbjct: 259 KKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNGIRVAIDLRKDVNA 318

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            +ILNQLY+YT LQ  FSV  +AL   +P+   L  IL  ++  +++++VRRT+Y L KA
Sbjct: 319 SIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVHYLNHQKDIIVRRTEYDLKKA 378

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + RAH++ GL IA+ N+DE+++IIR S N   A  +LM+R                    
Sbjct: 379 KARAHIVEGLLIALDNIDEIIKIIRASYN--DAEEKLMER-------------------- 416

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LSEVQ +AI+++RL RL GL R+ + NE   L   I+    +L+S   ++ I
Sbjct: 417 ------FDLSEVQAKAIVDMRLRRLQGLEREKLENEYAELLKTIEYLESVLASDELVMSI 470

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+EL  +KD+    RRT       D + ED I  ED+VVT++H+GYVKR+P S Y+ Q+
Sbjct: 471 IKEELSEIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQK 530

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG + +  R+ DFV  LF  +TH  ++FF++ G VY+ K + +P  S  A+G A++N
Sbjct: 531 RGGKGVTALSTRENDFVKHLFFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVN 590

Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +L+L+ GE+IT ++P   F +DE      Y+V AT++G  ++  L+++    ++G +A+ 
Sbjct: 591 LLALDPGEKITAVIPIKEFKDDE------YLVMATRNGVFKKTSLTEYDSSRKNGIVAIN 644

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V       +I+L T  G  ++F  + +R   GR S GV+GISL        
Sbjct: 645 LAEDDELIGVSLTDGNQNIILGTHKGLAIKFNEADVRAI-GRVSKGVKGISLK------- 696

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                  D DY               LI  D      +  D++                 
Sbjct: 697 -------DDDY---------------LIGMD------IATDNA----------------- 711

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856
            ++L+V+EKG+GK T +  +    R+GKG+    ++K  + GAL  +  +  + D I+++
Sbjct: 712 -YVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTK--KTGALSGMCVIEKEKDDIMVI 768

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           S  GT+IR+  + I    R+T GV + +  +D  + ++ ++
Sbjct: 769 SIDGTVIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIAKV 809


>gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 835

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/916 (41%), Positives = 554/916 (60%), Gaps = 99/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EHI          +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRILF M
Sbjct: 1   MDEHIFDK-------VHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   +K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R  L++G GNFGS+
Sbjct: 54  SELGNGPDKPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   + +IDN      D  +D LMEI++GPDFPTGA ILG++
Sbjct: 174 GIAVGMATNIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATILGKS 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R VS I      + +I++TE+PY VNKA +++KIAELV++K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  + D+S+ QG RV IEL+R  +A+VILNQLY++T LQ  F VNM+AL   +P+   L 
Sbjct: 294 ITGIIDQSNMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALVNNEPKVLNLH 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRTKY LNKA++RAH+L GL IA+ N+DEV+ IIR S +   A++
Sbjct: 354 QMLTYYLEHQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQ 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L++R                            LS+ Q++AI+++RL  LTGL R+ I  
Sbjct: 414 KLIERFG--------------------------LSDAQSQAIVDMRLRTLTGLEREKIEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E N L   I E   IL+   +LL +I++EL  + D+    RRT I     D+  ED I  
Sbjct: 448 EYNELMKRIDELKAILADNKKLLMVIREELSIIMDKYGDDRRTAIGYDEFDISMEDMIPN 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  V+T+++LGY+KR+    +R+Q RGG+G  G+   D+D++ D+ + +TH  VLFF++ 
Sbjct: 508 ESTVITMTNLGYIKRMTPDNFRSQNRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNK 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VYK K + +P     ARG A++N+L+L  GE+I+ I+P    +   +N Y+  ATK G
Sbjct: 568 GRVYKLKAYEIPEAGRTARGTAIVNLLTLQAGEKISAIVPV---DGIKDNEYLFMATKQG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++    ++  I ++G  A+ L   DE++ V+      +I L TK G C+RF  + +R 
Sbjct: 625 IVKKTYCKEYANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRP 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+++GV G+++ +GD+V+ M                   ++ Q     GDT      
Sbjct: 685 -TGRSAMGVIGMNILEGDEVVGM------------------QLNTQ-----GDT------ 714

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L VSE G GKRT   +F + NR GKG++     KI
Sbjct: 715 ------------------------LLIVSENGLGKRTPIEEFNLQNRGGKGVKC---YKI 747

Query: 836 NE-IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           NE  G ++ V  V++  +I+L++ +G +IR+ V  I    R T GV + +     +V  V
Sbjct: 748 NEKSGNVIGVKAVSNTREIMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKV 807

Query: 895 ERIRESEIVDEAESTE 910
            ++RE ++ DE ES E
Sbjct: 808 AKVREEDVSDETESEE 823


>gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
          Length = 864

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/898 (41%), Positives = 554/898 (61%), Gaps = 92/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K + K A
Sbjct: 8   VKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YD + RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+
Sbjct: 68  RIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGM+T+IP HNL
Sbjct: 128 SPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +I+ P+I+   LM  I+GPDFPTG  I+GR  I  AY  GRG + +R  + 
Sbjct: 188 GEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIMGRGSIYKAYKNGRGKLTVRAKTR 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E  S  R+QI+V E+PYQVNKA +++KIA+LV+ +++  I+D+RDESDR G R+VIELK
Sbjct: 248 VEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LNQLY+++ LQ  FSV M+AL   +P+  +L  IL+ ++  ++EVV RRT+Y
Sbjct: 308 REATPKVVLNQLYKHSRLQVTFSVIMIALVDKEPKVLSLKQILEHYLEHQKEVVRRRTQY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA DRAH+L G  IA+AN+DE+V +I+ +   +TAR  LM+                
Sbjct: 368 DLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLME---------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q  AIL +RL  LTGL RD I +E   L  +I     IL+S  
Sbjct: 412 ----------NYKLSETQANAILRMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +LL IIK+E+L++K + +  RRT I+    D+E ED I  E +VVT+++ GY+KR+PL +
Sbjct: 462 KLLEIIKEEILAIKAKYNDERRTSIMNRATDLELEDLIEEEQIVVTMTNQGYIKRMPLDL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG  G+  ++EDFV ++F  +TH   LFF++ G VY+ K +++P    QARG
Sbjct: 522 YRSQRRGGKGVIGISTKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARG 581

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A+IN+L L +GE+I  ++P   FP D       Y++ ATK+G +++  L ++   N +G
Sbjct: 582 TAIINLLELEEGEKINAVIPIKEFPAD------AYLIMATKNGLIKKTALEEY-NTNYTG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V     + +I L T+  + + F  + +R   GRNS GV+GI+L   
Sbjct: 635 LIAINLRENDELIGVRVIEAKENIFLVTRNAKAIHFSEADVRS-VGRNSYGVKGINLETE 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI + I    D+  DE +   ++   +R LIS                          
Sbjct: 694 DEVIDLGI----DSAGDELLVITENGYGKRTLIS-------------------------- 723

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                                  ++R+ NR GKGI   ++++ N  G L A   V+D+ +
Sbjct: 724 -----------------------EYRVQNRGGKGILTANLTEKN--GQLAAARIVDDSLE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++ ++  G +IRV  +EI    R T GV I +  ++++VVS+ RI +  + D+ ++ E
Sbjct: 759 MMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEEDQVVSLARINDDILEDQEDNKE 816


>gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
 gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
          Length = 831

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/882 (43%), Positives = 533/882 (60%), Gaps = 93/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74
           I  V I D ++ SYL Y+++VI+GRA+P+ RDGLKPVHRRIL+ M   +G+  N KY KC
Sbjct: 10  IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMG YHPHG+ AIYDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE +
Sbjct: 70  AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ KDTVDF PNYDGS +EP +L  R+PN+LVNG  GIAVGMAT+IP H 
Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  +  I+NP  +++ ++ +I GPDFPTG +I GR GI  AY TGRG I IR   
Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGIIHGRQGIIEAYKTGRGRIKIRAKV 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EKT   ++ IVV EIPYQVNKA + E+I  L ++K +  IA++RDESD+ G R+VIEL
Sbjct: 250 HVEKTK-TKDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIEL 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN LY+ +++++ F + ++A+ G +P+ FTL+ +L  F++ R+ +V+RR  
Sbjct: 309 KREAMSEIVLNHLYKSSAMETTFGIILLAIEGREPKIFTLLELLDIFISHRKTIVIRRII 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR R H+L G  IA+ N+DE+V +IR S NPE A+ ELM R              
Sbjct: 369 FELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q++AILE+RL RLTGL RD I NE   L   I E   IL S 
Sbjct: 415 ------------FSLTEIQSKAILEMRLQRLTGLERDKIENEYRELVALIAELESILRSE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++ G+IK+ELL V+ +  +PRRT I E    ++ ED I  E +VVT+SH GYVKRV L 
Sbjct: 463 DKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIEDLIPNEAVVVTMSHRGYVKRVLLK 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGGKG+      D+DF+   F+ +TH +++F ++ G +Y  KV+R+P     A 
Sbjct: 523 TYEKQHRGGKGKISGNTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAI 582

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           GKA++N++ L  GE+I T +    F ED+S      +VF TK+G V+R  LS++  I  +
Sbjct: 583 GKAVVNLIGLQDGEKIMTTITTSDFNEDKS------LVFFTKNGIVKRTNLSEYKNIRNN 636

Query: 672 GKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DE++S     +   ++ + TK GQC+RF   +IR   GR + GV GI   
Sbjct: 637 GVRAINLDEDDELISASIIDSSVKELFIATKEGQCIRFAADSIRDI-GRVARGVIGIKFK 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             +  +  A  +  D D                                           
Sbjct: 696 VANDSVIAATTIKGDEDK------------------------------------------ 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND- 849
                    +L++SE G GK+T +  +   NR GKG+ A  ++  N+ G LV+V  VND 
Sbjct: 714 ---------LLSISELGIGKQTLAGSYSTINRGGKGVIAMKLT--NKTGKLVSVLSVNDS 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N  +++++  G +IRVP+  IR A R T GV I S    ++V
Sbjct: 763 NMDLMVLTTSGKMIRVPLESIREAGRNTSGVKIVSLGNKDKV 804


>gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 872

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/890 (42%), Positives = 543/890 (61%), Gaps = 83/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 AKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNPDI+L+ LM+ I+ PDFPTG  I G  G+K+AY TGRG I++R  + 
Sbjct: 192 REVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRIILRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE      ++IVVTEIPY VNK  ++E IA LV+E ++  IA+  DES RQG R+VI++K
Sbjct: 252 IESDES-HDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDESGRQGMRIVIDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTK+
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTKF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DRAH+L GL IA  N+DEVV IIR S  P  A+  L +R               
Sbjct: 371 ELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  + +  E + L   I    +ILS   
Sbjct: 416 -----------FDLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 465 LCKKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG G  G   R+ DF   ++  + H ++LFF+  G  Y  K + +P G+  ++G
Sbjct: 525 FREQARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   + I  I+     +DE   N+ YVVFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ +   DE++ V     EN++++  + G+ VRF    IRV  GR + GVRG+ L  GD
Sbjct: 645 IAINIAEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVM-GRTATGVRGMRLDDGD 703

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +   IV                                       V+  I+E      
Sbjct: 704 DAVIGMIV---------------------------------------VDDPINET----- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE G+GKR+S  D+R +NR GKG++   ++  ++ G LVA+  V D++ +
Sbjct: 720 ------VMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902
           ++++  G  IR+ V E R+  RAT+GV +I  + K++ + SV R   SE+
Sbjct: 772 MIINKSGITIRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSEL 821


>gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
 gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
          Length = 865

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/905 (41%), Positives = 547/905 (60%), Gaps = 58/905 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S D    + I  ++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M  MG+ 
Sbjct: 14  SGDGGNPQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLL 73

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+K+VKCA++ GEV+GKYHPHG++A+YDA+ RMAQD+SLR  L++GQGNFGSVDGDPPA
Sbjct: 74  HNRKHVKCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPA 133

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+   A  LL D+ KDTVDF  N+D +  EP++L  + PN+L+NG  GIAVGM
Sbjct: 134 AYRYTEARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGM 193

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E+VD C+ +++NP   LD +++ ++GPDFPTG  I G+ GIKNAY  GRG
Sbjct: 194 ATNIPPHNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHGKGGIKNAYQNGRG 253

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             ++R    +E    +++ IVVTEIPYQVNK+ +++KIA+LV +K I +I+D+RDESDR 
Sbjct: 254 RFMMRAKVAVEHLP-NKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRD 312

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A  +++LNQLY++T +Q  FS+  +A+   +P+   L+  L  F+  R 
Sbjct: 313 GMRIVIELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMGLVQALNHFIDHRI 372

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRT YLL KA+DR H+L G  +A+ +LD V+ IIR S N   AR  L+   +    
Sbjct: 373 DVVRRRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVA-YFTGKK 431

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           I      I+ +      D     S  Q  AILEL+L RLT L  D+I +EL  +   I E
Sbjct: 432 IT-----INTTGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  +L  +I +EL  ++ +    RRT I +   ++  ED I  E + VTVSH G
Sbjct: 487 YESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLIADEQVAVTVSHSG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR P+S YR QRRGG GR G+  RDEDFV  +F+ STH  +L F++ G VY  KV+ +
Sbjct: 547 YLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEV 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P  +   +GK + N+++L  GE +  I+P    E+ES     YV F T+ G V++  L D
Sbjct: 607 PEIAAAGKGKHIGNLVALQPGESVRAILPVKSLEEESR----YVFFTTRKGTVKKTALVD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +   G IA+ +D  DE+++ +       + L +  G  +RF  + +R+  GR + GV
Sbjct: 663 FSNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIM-GRPAYGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ +   D ++ MAI                             +E    KN  +   N
Sbjct: 722 RGMDIGAKDYIVGMAIT---------------------------PKERKKGKNGGADTAN 754

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +              IL+V+E G+GKRT   ++R+  R GKG+     ++ N  G +VA+
Sbjct: 755 L--------------ILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERN--GKVVAI 798

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V ++ + +++S  G +IR   + IR A R+T+GV +      ++V +   I + E   
Sbjct: 799 MLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDEKA- 857

Query: 905 EAEST 909
           EAE T
Sbjct: 858 EAEPT 862


>gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  +IL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLANIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 790

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/871 (42%), Positives = 539/871 (61%), Gaps = 86/871 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    +  V I  EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ K+T+D+ PNYDG  QEPVVL AR+PN++VNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+NPD+    LM  I+GPDFPTGA ILGR GI+ AY+TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEVN-NKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T+LQS F +  +AL   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 362 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L  +I E   
Sbjct: 413 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II +EL  ++      RRT I  G   +EDED I RE++V+T++H GYVK
Sbjct: 456 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGG+G  G+  ++ DFV  LF+ ++H  ++FF+  G VY+ K + +P  
Sbjct: 516 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++P    ES     ++ FAT+ G V++  L D+  I 
Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIPIESFESGH---FLFFATQQGIVKKTPLKDYNNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      +I++ T+ G  + FP   +R   GR + GV+GI  
Sbjct: 633 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGI-- 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                      H+S                ++D+ ++ +I +E 
Sbjct: 690 ---------------------------HIS----------------EDDAVIDMDIVDE- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+ KGFGKRT   ++RI  R GKGI+  +V+  N  G +V +  V +
Sbjct: 706 -------NNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVVGLKVVEE 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           ++ +++++  GT+IR  ++ I I  R T+GV
Sbjct: 757 DEDLMIITASGTVIRTSMSGISIMGRNTQGV 787


>gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424]
 gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424]
          Length = 815

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/886 (42%), Positives = 551/886 (62%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   ++G+  +K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG+ A Y  + R+AQD++ R  +++GQGNFGS+DGD  AA R
Sbjct: 62  PYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG VA+ DN +I +  LM  I+GPDFPTGA +LGR+GI  AY TGRGSI+
Sbjct: 182 IPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLLGRSGIVKAYTTGRGSII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+IV+TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L   L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEALYHYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S   E A+  LM++         
Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++VQ +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 413 -----------------FSLTDVQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K+ELL +KD+    RR+ I+EG +D +++ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIEIVKEELLEIKDKYGDKRRSVIIEGQIDQIDNEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED +  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +    +L  +F+TK G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEDTSL--IFSTKFGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V     D  ++I                                    
Sbjct: 693 LSPDDYVVGMEVV-----DESKKIL----------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                        TV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N+ +++++D+G +IR+ ++ I    R   GV + +   D++V +V
Sbjct: 758 GNEDLMIMTDQGIIIRIDISTISTLGRTATGVKVINLVDDQKVATV 803


>gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 554/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGM TNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +  +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVWSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808



 Score = 42.4 bits (98), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
           G + R+   EI    R  KG+ + +  K +   S++ I   ESE  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609


>gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
 gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
          Length = 916

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013]
          Length = 916

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54]
 gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54]
          Length = 822

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHXAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVT  PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVIIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/900 (41%), Positives = 560/900 (62%), Gaps = 91/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+++  + Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--DHYLFFATRQGIVKRTNVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R   GR + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                        S D E                    
Sbjct: 693 EGDHLVGATIV------------------------SDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +SE G+GKRT + ++    R GKGI    V+  N  G L  +  V  +
Sbjct: 709 ---------VLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  +  I    R+T GV +    ++ ++++        +VD A+  E
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTF------ALVDAADQKE 811


>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
 gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
          Length = 929

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/877 (42%), Positives = 544/877 (62%), Gaps = 91/877 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  NK + K A   GEV+G
Sbjct: 91  EMEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVIG 150

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YDA+ R+AQ +S+R  L++G GNFG++DGD  AA RYTE RL + A  LL
Sbjct: 151 KYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMELL 210

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDT+D++ NYD S QEPVVL AR+PN+LVNG  GIAVGMATNIP HNL E +    
Sbjct: 211 RDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAVC 270

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +IDNPD  +D LM ++ GPDFPTGAVI+G  GI+ AY TGRG I IR  +H+E T   R
Sbjct: 271 MLIDNPDATVDDLMTVMPGPDFPTGAVIMGSEGIRQAYETGRGIITIRAKAHVESTKTGR 330

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TE PY VNK  + EKIA+LV EKR+  I+D+RDES+R+G R+VIELK+GA  +V+
Sbjct: 331 NKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAIPEVV 390

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+Y++LQS F +  +AL    P   TL  +L+ ++  + +VV RRT++ L KAR R
Sbjct: 391 LNNLYKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKARAR 450

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL +A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 451 AHILEGLLLALDHIDEVISIIRSSRTDTQASERLIER----------------------- 487

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 ++ QT AILE+RL RLTGL RD I+ EL+ L   I+   D+L+   ++L +IK 
Sbjct: 488 ---FGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVIKS 544

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  + ++    RRT I +  + ++ ED I  EDMVVTV+H GYVKR+P++ YR+Q+RGG
Sbjct: 545 EMSEIGEKYGDKRRTTISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGG 604

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG  G+ ++D DFV DLF+ STH  V+FF++ G VY+ KV  LPIGS  ARG AL+N+L 
Sbjct: 605 KGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLP 664

Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           L +GE  T ++    FP DE      Y++FAT +G V++  +SD+ +  R G IA+ L  
Sbjct: 665 LGEGEHPTAVITTREFPADE------YLMFATANGMVKKTAMSDYDKSRRDGIIAINLKR 718

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            DE+++V        ++L +++G+ + F  S +R   GR++ GVRGI+L    +++ M  
Sbjct: 719 DDELVNVRRVKPGQKVILCSEVGKAILFDESEVRP-TGRDTSGVRGITLKDDVKMLGM-- 775

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                         EIT+   D                     +
Sbjct: 776 ------------------------------EITNGNGD---------------------L 784

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L ++E+G+GKRT  +++    R G+G+ AT ++  ++ G LVA   V    ++++VS++G
Sbjct: 785 LVMTERGYGKRTPVFEYPEHKRGGQGV-AT-IAMTSKKGNLVACRVVGPQHELMIVSEEG 842

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +IRV   +I    RAT+GV I +  ++++V +V R+
Sbjct: 843 VVIRVKTADISKLGRATQGVKIMNMGENDKVSAVARM 879


>gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36]
 gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36]
          Length = 826

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G   +N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPAVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R   GR + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSM-GRIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
 gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
          Length = 842

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/880 (40%), Positives = 541/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ALM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTS-THDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/883 (41%), Positives = 554/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+++ +  Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTAEH--YLFFATRQGIVKRANVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R   GR + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                        S D E                    
Sbjct: 693 EGDHLVGATIV------------------------SDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +SE G+GKRT + ++    R GKGI    V+  N  G L  +  V  +
Sbjct: 709 ---------VLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I++++D G +IR  +  I    R+T GV +    ++ ++++
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMT 800



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR +  +F+   R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G + R+   EI    R  KG+ + +  K E   S++ I
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTI 598


>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
 gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 871

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/891 (41%), Positives = 547/891 (61%), Gaps = 53/891 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFKKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q   +  LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  VAVI NP+I    LM+ + GPDFPTGA ILG + I+ AY TGRGSI +RGV+
Sbjct: 188 LGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGTSAIREAYTTGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +IE    +   DRE I++TE+PYQ NKAA++EKIAE+V EKR+  IAD+RDESDR G RV
Sbjct: 248 NIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRDGMRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQVLTLKQFLSVFLDFRIESIA 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA++ LD ++ +IR +P+  TA+ EL+            
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELIT----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSEVQ  AIL+++L RLT L  D IR E + L  +I +  DI
Sbjct: 417 ---------------TYGLSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+L II+ E+  +K    TPRRT I+ G  +++D D I  E  ++ V+  GY+KR
Sbjct: 462 LARRERVLEIIETEVAQLKTNFATPRRTVILPGEGELDDRDLIANEKAIILVTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ + AQ R  +G++   ++D+D +        H S+LFFS  G VY  + +++P  S
Sbjct: 522 MPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++ +L+ F  I  
Sbjct: 582 RTSRGTPIVQMLPIPKEEKITSIVPVDEFSSEE---YLVMLTKGGNIKKTELAAFSHIRA 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D++  V     E+ +++ ++ G  + F  +  ++    R + GV+ + L
Sbjct: 639 NGLIAISLEEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKAMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+++ M I+  A  +  + +               +TE+I +++   + +  I+E  
Sbjct: 699 KNKDELVGMDILPAAILETLDIVT------------EAETEDIEAIETIETEDIEITETT 746

Query: 790 CQELKLKE-----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +  ++        ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +
Sbjct: 747 EESAEVPSTGIVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATL 806

Query: 845 FPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             V ND+D+I++V+++G +IR  VN I I SR+  GV +    +D+ +  V
Sbjct: 807 RIVNNDDDEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGV 857


>gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 813

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/872 (42%), Positives = 527/872 (60%), Gaps = 90/872 (10%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S
Sbjct: 10  RDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFS 69

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR +L++GQGNFGSVDGD  AA RYTE RL K AH +L D+ K+TVDF PNYDGS QEP+
Sbjct: 70  LRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEPL 129

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           VL  R PN+LVNG  GIAVGMATNIP HNL EVVD C+ ++ +P+  +DALMEII  PDF
Sbjct: 130 VLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPDF 189

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKI 284
           PT  +I G  G+K+ Y TGRG +V+R   H E    G R+ I+V E+PYQVNK  + E++
Sbjct: 190 PTAGIIYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERM 249

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           AELV EK++  I+ ++DESD+ G R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL
Sbjct: 250 AELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVAL 309

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              +P    L  ++  F+  R EVV RRT + L KARDR HVL GLA+A+AN+DE +RII
Sbjct: 310 VDGQPRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIRII 369

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLA 463
           R SP P  A+ ELM                           ++Y LS+ Q + IL++RL 
Sbjct: 370 RESPTPPVAKAELM---------------------------SLYRLSDTQAQEILQMRLQ 402

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTR 519
           RLTGL +D I  E   +   I++ LDIL+   R+  II +EL +V++E        RR+ 
Sbjct: 403 RLTGLEQDKIVAEYKEVMAHIEDLLDILAKPERVSTIIGEELTAVREEFGQTKLGARRSE 462

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I     D+  ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  
Sbjct: 463 IEHSAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQ 522

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           LFI +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D
Sbjct: 523 LFIANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGD 582

Query: 640 ESSW-NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
             S+  + YV  AT  G V++  L +F    ++G IA+ LD  D ++       ++D++L
Sbjct: 583 MRSFPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVML 642

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G+ VRF  + +R   GR + GVRG++L     VI+M                    
Sbjct: 643 FSDGGKAVRFDENDVRPL-GRQARGVRGMTLEDSQSVIAM-------------------- 681

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                L++ D                           + Q +LT +E G+GKRTS  ++ 
Sbjct: 682 -----LVAED---------------------------ESQSVLTATENGYGKRTSIVEYT 709

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R  KG+ A   S+ N  G +VA   V+ +D+I+L++D G L+R  V EIR   RAT+
Sbjct: 710 RHGRGTKGMIAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVAEIRELGRATQ 767

Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           GV + +  +   +  ++RI E++  +E ++T+
Sbjct: 768 GVTLIALDEGATLSGLQRIVEND-ANENDATD 798


>gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM]
          Length = 841

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/905 (40%), Positives = 550/905 (60%), Gaps = 86/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  NKK
Sbjct: 3   KEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 63  YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K +  +L DL K+TVDF+ N+D S QEP VL  + PN+LVNG  GIAVGMATN+
Sbjct: 123 TEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E VD   A IDN +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+
Sbjct: 183 APHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+  G+R  I+VTEIPY VNKA M+ + +ELV+E +I  I ++RDESDR+G RV
Sbjct: 243 RAKVAFEEI-GNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +P++  L  I+  FV  R E+V+
Sbjct: 302 VYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           RRT+Y L KAR+RAH+L G    +A    LD+ + IIR S  P+ A+  L+         
Sbjct: 362 RRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLI--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS++Q +AIL+LRLARLTG+  D IR+E  ++   I + 
Sbjct: 413 -----------------AEFELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++ +R   IIK ELL VK++    RRT I     +M  ED I  E++V+T+SH GY
Sbjct: 456 EDILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  Y  +V+ +P
Sbjct: 516 IKRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDF 665
            GS  A+G+A+ N++++   ++I   +   +  D      +YVV  TK+G +++  L  +
Sbjct: 576 EGSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAY 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G  A+++   D++L        ++I++ TK G+C+RFP    R   GR S+GVR
Sbjct: 636 SRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARA-VGRTSIGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL   D+VI M +V                                   ND       
Sbjct: 695 GISLEDNDEVIGMIVV-----------------------------------ND------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                    ++ + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+ 
Sbjct: 713 ---------MENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQ 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D + +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++   + V++
Sbjct: 762 SVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVED 821

Query: 906 AESTE 910
            E  E
Sbjct: 822 EEIEE 826


>gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
 gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
          Length = 848

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/903 (40%), Positives = 553/903 (61%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D CVA IDN +ID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 AKAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  +++ F+  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIRYFIEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELVEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YVVF TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M             IC          +   DTE I               
Sbjct: 695 DEDGQDEVVGM-------------IC----------IKDPDTETI--------------- 716

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        + VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 717 -------------MVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DE--RVVSVERIRESEIV 903
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K  DE   V  V    E EI+
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEDEIL 821

Query: 904 DEA 906
           +E 
Sbjct: 822 EEG 824


>gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3]
          Length = 878

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/892 (40%), Positives = 551/892 (61%), Gaps = 65/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +     +K Y KCA
Sbjct: 15  LIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDGDPPAA RYTE R+
Sbjct: 75  YTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 AKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG + 
Sbjct: 195 NEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGKAE 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDESD+ G R+V ELK
Sbjct: 255 IVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVYELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++AF+++++ RRT +
Sbjct: 314 RDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAF 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R +   D+  L+    
Sbjct: 374 DLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDLAKLLQRAM 432

Query: 436 DSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +Y  +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  +I + LDILSS 
Sbjct: 433 GENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSD 492

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+  IIK+E+ ++K++    RRT I  + G +D+  ED I  E+ V+T +++GY+KR P
Sbjct: 493 ERVKEIIKEEITAIKEKYGDERRTAIEPISGEVDI--EDLIPEEECVLTYTNIGYIKRQP 550

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q
Sbjct: 551 VDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQ 610

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L DF  + ++G
Sbjct: 611 SRGTNIVNLLQLDEGERIAAMMKTSD---FAENKYFICVTKYGKIKRTPLYDFRNVRKNG 667

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DEI +      ++ I++ T LG  + F    IR   GR + GVR I L + 
Sbjct: 668 LRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSM-GRLAAGVRAIKLRED 726

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++  A V   D                 R+++                          
Sbjct: 727 DYIVGAAKVYSDDM----------------RILT-------------------------- 744

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                     V++KG+G+ ++  D+R+ NR G G++   +   ++ G +  +  +  +D 
Sbjct: 745 ----------VTDKGYGRLSALSDYRMQNRGGNGLKNYKIR--DDRGYVCGIRSIQTDDD 792

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E  D
Sbjct: 793 VILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETAD 844


>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
 gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
          Length = 821

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/882 (42%), Positives = 541/882 (61%), Gaps = 88/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EM+++Y+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++GV +NK Y K A
Sbjct: 11  IQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGVAYNKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+YD + RM QD+SLR  LI+GQGNFGSVDGD  AA RYTE RL
Sbjct: 71  RIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ +  LL DL K+TV+F+ NYD + QEP +L AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 131 KRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVGMATNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDG + ++D P+ D+  +M++I+GPDFPT   I G+ GI +AY TGRG I +R  + 
Sbjct: 191 GEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFITGKQGIIDAYRTGRGRIRMRARAQ 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +   RE I+VTEIPYQVNK+ +LEKI ELV+EKRI  IADLRDESDR+G R+V+E+K
Sbjct: 251 IETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDREGMRIVVEIK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A+ ILN+LY++T ++  F V  +AL    P    L  IL+ F+  R E+V+ R K+
Sbjct: 311 RGEHAESILNRLYKFTPMEGTFGVINLALVNNSPRVLNLKEILEYFIEHRREIVIARIKF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  +AH+L GL +A+ NLDEV+  IR S   + A+ +L+ R               
Sbjct: 371 ELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIAR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         S+ Q +AIL++RL RLTGL  + I  +   +   I +  DIL++ S
Sbjct: 416 -----------FQFSDEQAQAILDMRLQRLTGLEIEKIIRDYEEVLALIDDLQDILANDS 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ II+ EL  ++++   PRRT I++   +++ ED I  E  V+T+++ GYVKR P   
Sbjct: 465 RVIDIIRTELHEIREKYADPRRTIIIDDHEEIDLEDLIADEPTVITLTNDGYVKRTPADT 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y++Q RGGKG+ G+ +++ DFVTD+F+ STH  ++ F+  G VY  K + +P     +RG
Sbjct: 525 YKSQHRGGKGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRG 584

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N + L + E+I+T+ P   F ED+      +++F TK+G  ++  LS++  I + G
Sbjct: 585 KAIVNFVDLEKDEKISTVFPVREFSEDK------FLLFITKNGIAKKTPLSEYANIRKKG 638

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V      N +++TT+ G  + F    +R   GR S GV+GI+L   
Sbjct: 639 VNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRA-VGRVSRGVKGITLVNN 697

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+S A  +  D D                                             
Sbjct: 698 DYVVS-AETISKDID--------------------------------------------- 711

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                 +ILTV++ G+GKRT + ++R+ +R GKG      +  N  G +V    V D D+
Sbjct: 712 ----PSYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKN--GLVVRGLQVVDGDE 765

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I+L+S +G +IR+    IRI  R T+GV +   ++D+R++SV
Sbjct: 766 ILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISV 807


>gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis]
 gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis]
 gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis]
 gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/920 (41%), Positives = 557/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150]
 gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150]
          Length = 823

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/900 (42%), Positives = 556/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V +T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G+TGI  AY TG+GSIV+R
Sbjct: 182 PHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKTGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPGRVIAIIKEELDESKRKFGDARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASENN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF  + IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A                         I+ D E                    
Sbjct: 694 DGDQVVGAA------------------------AITDDQE-------------------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +SEKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ N
Sbjct: 710 ---------VLIISEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GHLAGIATVSGN 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+V   E+ +
Sbjct: 759 EDIMVMTDTGVIIRTAVANISQTGRATQGVKVMRLDNSARIVTFALVEPEEVVKAPEADQ 818


>gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 861

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/886 (41%), Positives = 540/886 (60%), Gaps = 55/886 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  ++I +EM+ SYL Y+++VI+GRA+PD+RDG KPVHRRIL+ M +MG++ NKKY KCA
Sbjct: 3   LVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKCA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G+ MG YHPHG++AIYD L R+AQ +SLR  +I+GQGNFGSVDGDPPAA RYTECR+
Sbjct: 63  KVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECRM 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  +TVDF PNYD S  EP VL  + PN++VNG  GIAVGMATNIP HNL
Sbjct: 123 MRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + +++NP   L  +++ ++GPDFPTG  I GR+GI NAY TGRG  ++R  + 
Sbjct: 183 TEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIYGRSGIANAYRTGRGRFLMRAKAS 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R  I+VTEIPYQVNKA ++E++A+LV +K I +I+D+RDESDR G R+VIELK
Sbjct: 243 IEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA A ++LNQLY++T +Q  FS+  +A+   +P    L   ++ F+  R +VV RRT Y
Sbjct: 303 RGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQPRELPLPDAIRHFIDHRVDVVRRRTAY 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ----RSWNASDIKDLI 431
           LL KAR+R H+L+G  IA+ +LD V++IIR S +   AR  L Q    R+    D     
Sbjct: 363 LLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEALAG 422

Query: 432 DLIDDSSYTIGS----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             +D   Y I      + T+ LS  Q  AILEL+L RLT L  D++  EL  +   I E 
Sbjct: 423 VKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERIAEY 482

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+S  +L  +I +EL  V+      RRT+IV+   +++ ED I  E + VTVSH GY
Sbjct: 483 ESILASEKKLRSVIVKELEDVRKAYGDERRTQIVDETAELQLEDLIADEQVAVTVSHSGY 542

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR P+S YR Q+RGG GR G+  R+EDFV  L + STH  +L F++ G VY  K++ +P
Sbjct: 543 LKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTGRVYWLKIYEIP 602

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                 +GK++ ++L+L  GE++  IM     + +    ++ FAT++G V++  L DF  
Sbjct: 603 DVGAAGKGKSIASLLNLQPGEQVRAIMAV--RDLTEEGKFIFFATRNGTVKKTPLKDFSN 660

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G IA+ +D  DE++          + L T  G  +RF  + +R   GR + GVRGI
Sbjct: 661 VMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSM-GRPARGVRGI 719

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D V+ MA                   + + R +  D +    L            
Sbjct: 720 DLGKKDHVVGMA------------------ATPKDRGVGDDGKACACL------------ 749

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL+V++ G+GKRT   ++R+  R GKG+   +V    + G +V++  V
Sbjct: 750 ------------ILSVTQNGYGKRTDVDEYRLQTRGGKGV--INVKTTAKNGKVVSIQLV 795

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +D  +++++S  G +IR+    +R A R+T+GV + +   +++V +
Sbjct: 796 DDTSELMVISQYGKIIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAA 841


>gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 811

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/885 (42%), Positives = 546/885 (61%), Gaps = 91/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +++ DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRI++ M  +G+  +K + KCA
Sbjct: 6   VVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+ KYHPHG+ A+YDAL RMAQ +S+R  L++G GNFGSVDGD  AA RYTE R+
Sbjct: 66  HIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEARM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF PNYD S +EP VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG + ++DNP+ D   LM+ ++GPDFPT   I+G  GI +AY TGRGSI IR  + 
Sbjct: 186 AEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIMGVQGIISAYTTGRGSIKIRAQAE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ SG + +IVV EIPYQVNKA ++EKIAELVR+K+I  I+DLRDESDR+G R+VIELK
Sbjct: 246 IEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R     ++LNQLY++T +Q  F V M+AL   +P    L  +L  ++  ++++++RRT +
Sbjct: 306 RDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPNVLNLRDMLYYYLEHQKDIIIRRTTF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH++ GL IA+ANLDEV+  IR S   E A++ L+++               
Sbjct: 366 DLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEK--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q +AILE+RL RLTGL  + +  E   L  +I     ILS   
Sbjct: 411 -----------FLLTEIQAQAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEG 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L IIK ELL ++ +    RRT I +     + ED I  EDMV+T++  GY+KR+PL  
Sbjct: 460 KILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLDT 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGG+G S + ++++DF+  LFI STH  +LFF++ G VY+ KV  +P    Q++G
Sbjct: 520 YRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKG 579

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            A+IN+L +   E++TT++P   F +DE      ++   TK+G V++  L++F    R G
Sbjct: 580 TAIINLLFVGTEEKVTTVIPVKEFNKDE------FLFMCTKNGIVKKTSLNEFDTSRRDG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  D+++ V     + +I++ T+ G  +RF    +R   GR + GVRGI L +G
Sbjct: 634 IIALTLDDHDDLVDVRLTNGQEEIIIGTQKGLAIRFSEDDVRKL-GRIAKGVRGIGLIEG 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M  V +                                      EG+        
Sbjct: 693 DFVVGMDTVRN--------------------------------------EGD-------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L V++ GFGK+T   ++R+  R GKGI    +S  N  G +V++  V  +++
Sbjct: 707 -------LLVVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRN--GPVVSLLVVKPDEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           I+++S +G +IR+ VNEI    RAT+GV +   +  + V ++ ++
Sbjct: 758 IMMLSSEGIIIRMKVNEISTTGRATQGVTLMKLSSGDSVATIAKV 802


>gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
 gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
          Length = 857

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/887 (41%), Positives = 543/887 (61%), Gaps = 83/887 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +    +K Y KCAR+ 
Sbjct: 3   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARVV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL K 
Sbjct: 63  GEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              ++DDL KDTVD   N+D + QEP V+  R PN+LVNGG GIAVGMATN+PTHNL EV
Sbjct: 123 GEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLREV 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++GC A IDNP+I+LD LM+ I+ PDFPTGA I G  G+K+AY TGRG I+IR  + IE 
Sbjct: 183 IEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIYGLQGVKDAYETGRGRIIIRAKAEIE- 241

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +    ++IVVTEIPY VNK  ++E IA LV+E ++  I+++ DES RQG R+VI++KR A
Sbjct: 242 SDESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKRDA 301

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTK+ L 
Sbjct: 302 NANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKFELK 361

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R                  
Sbjct: 362 KAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKR------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L  +Q++AI+++RL++LTGL  D +  E + L   I    +ILS      
Sbjct: 404 --------FDLDNLQSKAIVDMRLSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELCK 455

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLGY+KR PLS +R 
Sbjct: 456 KVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFRE 515

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +P G+  ++G+A+
Sbjct: 516 QARGGVGSKGATHRDQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAI 575

Query: 619 INILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            N+L+++  + I  I+      DE   N+ YVVFATK+G V++  L  + +   +G IA+
Sbjct: 576 QNLLNIDSDDAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAI 635

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +   DE++ V     EN++++  + G+ VRF  + +R   GR + GVRG+ L  GD  +
Sbjct: 636 NIAEGDEVVDVRLTNGENELIMANRNGRAVRFDENTVRTM-GRTATGVRGMRLDDGDDAV 694

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
              IV+                                  ND   E              
Sbjct: 695 VGMIVV----------------------------------NDPVNE-------------- 706

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ++ VSE G+GKR+   D+R +NR GKG++   ++  ++ G LVA+  V D++ ++++
Sbjct: 707 --TVMVVSENGYGKRSLVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDLMII 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           +  G  IR+ V+E R+  RAT+GV + + +K   V+ SV +   SE+
Sbjct: 763 NKSGITIRLAVSECRVMGRATQGVRLINLSKKNDVIASVCKTMSSEL 809


>gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275]
 gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149]
 gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 916

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
 gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
          Length = 860

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/887 (42%), Positives = 547/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P P+ DES      +VF T++G ++R  L++F  I  
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 I    V+ AD                                       IS E 
Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807


>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
 gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
 gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
          Length = 945

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/889 (41%), Positives = 545/889 (61%), Gaps = 93/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +   + + K 
Sbjct: 96  ALKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKS 155

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A   GEVMGKYHPHG+++IYDA+ RMAQ++S+RL L++G GNFGS+DGDPPAA RYTE R
Sbjct: 156 AWTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESR 215

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L  AA  +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG  GIAVGMATN+P HN
Sbjct: 216 LTHAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHN 275

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV      +IDNPD  ++ LM+++ GPDFPTG +I+G  GI++AY TGRGSI IR   
Sbjct: 276 LAEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGTDGIRDAYTTGRGSITIRSKV 335

Query: 255 HIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           H+E    G R+++V+TEIPYQVNK  + E+IA+ V EKRI  I+D+RDES+R+G R+VI+
Sbjct: 336 HVENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVID 395

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK GA   V+LN LY+ T LQ  F V  +AL    P   TL  ++  ++  ++++V RRT
Sbjct: 396 LKSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDGVPRTLTLREMIYYYIEHQKDIVTRRT 455

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KA  R H+L GL IAV N+DEVV IIR S + + A++ + +R             
Sbjct: 456 QFDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFG----------- 504

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD               +Q  AIL++RL RLTGL R+++  ++  L   I+   D+L+ 
Sbjct: 505 IDD---------------IQGEAILQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAH 549

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +LL +IK+EL  +       RRT+I   G+ +++ ED I  EDMV+TV+H  Y+KR+P
Sbjct: 550 PQKLLEVIKEELTEISTRFSDKRRTQISALGVQNLDIEDLIAEEDMVITVTHASYIKRLP 609

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           ++ Y++Q+RGGKG  G+ ++D DFV ++F+ STH  VLFF++ G VY+ KV  LP+GS  
Sbjct: 610 VATYKSQKRGGKGVQGLSLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRH 669

Query: 613 ARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           ARG ALIN+L L++GE  T ++    FP +E      +++FATK G V++  +SD+ +  
Sbjct: 670 ARGSALINVLPLSEGEYPTAVITTRDFPAEE------HLMFATKSGMVKKTAMSDYDKSR 723

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G IA+ L   DE+++V    +   ++L +  G+ + F  S IR   GR + GVRGI+L
Sbjct: 724 RDGLIAINLKDGDELVNVRRVKESEYVILCSSAGKAIMFEESDIRP-TGRGTSGVRGITL 782

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G  ++ M                                EI++ K D           
Sbjct: 783 KDGATMLGM--------------------------------EISNGKGD----------- 799

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+E G+GKRT   ++ +  R G G+    ++   + G L A   V  
Sbjct: 800 ----------LLVVTEHGYGKRTPVSEYPLQKRGGLGVNT--IAMTQKKGKLSACRVVGP 847

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             ++++VS++G +IRV   +I + SRAT+GV I + A+ + V ++ R+ 
Sbjct: 848 QHELMIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALARMH 896


>gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
 gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/892 (40%), Positives = 551/892 (61%), Gaps = 65/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +     +K Y KCA
Sbjct: 15  LIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDGDPPAA RYTE R+
Sbjct: 75  YTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 AKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG + 
Sbjct: 195 NEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGKAE 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDESD+ G R+V ELK
Sbjct: 255 IVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVYELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++AF+++++ RRT +
Sbjct: 314 RDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAF 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R +   D+  L+    
Sbjct: 374 DLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDLAKLLQRAM 432

Query: 436 DSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +Y  +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  +I + LDILSS 
Sbjct: 433 GENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSD 492

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+  IIK+E+ ++K++    RRT I  V G +D+  ED I  E+ V+T +++GY+KR P
Sbjct: 493 ERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDI--EDLIPEEECVLTYTNIGYIKRQP 550

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q
Sbjct: 551 VDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQ 610

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L DF  + ++G
Sbjct: 611 SRGTNIVNLLQLDEGERIAAMMKTSD---FAENKYFICVTKYGKIKRTPLYDFRNVRKNG 667

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DEI +      ++ I++ T LG  + F    IR   GR + GVR I L + 
Sbjct: 668 LRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAAGVRAIKLRED 726

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++  A V   D                 R+++                          
Sbjct: 727 DYIVGAAKVYSDDM----------------RILT-------------------------- 744

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                     V++KG+G+ ++  D+R+ NR G G++   +   ++ G +  +  +  +D 
Sbjct: 745 ----------VTDKGYGRLSALSDYRMQNRGGNGLKNYKIR--DDRGYVCGIRSIQADDD 792

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E  D
Sbjct: 793 VILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETAD 844


>gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
 gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/905 (40%), Positives = 554/905 (61%), Gaps = 89/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D CVA IDN DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYMTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++IVVTEIPY VNKA +++ IA+L  EK+I  I++  DESDR+G R+V
Sbjct: 243 AKAEIE-TSSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +K +    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKTKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M             IC                     +K+  +       
Sbjct: 695 DEDGQDEVVGM-------------IC---------------------IKDPET------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DE--RVVSVERIRESEIV 903
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K  DE   V  V    E +I+
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSETEEDII 821

Query: 904 DEAES 908
            E +S
Sbjct: 822 AEEDS 826


>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
 gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
          Length = 826

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/894 (41%), Positives = 544/894 (60%), Gaps = 87/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM+++YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ NK + K A
Sbjct: 6   ILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP HN+
Sbjct: 126 KAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIPPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV G +A+ID+P+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR  + 
Sbjct: 186 REVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAV 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR+G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A   V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT+
Sbjct: 306 KRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVLRRTQ 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LN A  RAH+L GL I + NLDEV+  IR SP+  TA+  L+ R              
Sbjct: 366 YDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDR-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ +AILE+RL RLTG+ R  I +E       I+E   IL+S 
Sbjct: 412 ------------FGLTEVQAKAILEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++ + IIK+ELL V +     RRT +     D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 AKQMEIIKEELLKVSEVYGDERRTEMRPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G +G   ++EDF+  +FI STH  +LFF++ G  Y  KV+ +P     AR
Sbjct: 520 GYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRSAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L NI+ L  GE+I T +     +      +++ AT +G V++  L  +    R+G  
Sbjct: 580 GRSLANIMELPPGEKIRTYINIRNFDDPH---FIIMATANGIVKKTDLKQYSNPRRTGIN 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ ++  DE++       ++ ++L    G  VRFP S +R   GR ++GV+GI+L + ++
Sbjct: 637 AITIEEGDELIEARLTDGDHQVILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLDEAER 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ISM                                 +T+ +ND+S              
Sbjct: 696 CISM---------------------------------VTTKRNDTS-------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ G+GKR+   D+R++ R  +G+    +    +IG LV +  VND D +I
Sbjct: 709 -----LLAVTDNGYGKRSKVEDYRMTKRGARGV--ITIKAHEKIGNLVGLLDVNDEDDLI 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +++  G +IR  V++IR+  R T GV +      +R+ +  R+ +S+  DE  S
Sbjct: 762 IITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSD--DEPTS 813


>gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190]
 gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902]
 gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945]
 gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136]
          Length = 916

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
 gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
          Length = 820

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/891 (42%), Positives = 549/891 (61%), Gaps = 93/891 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 6   EKNQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAA 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+R+ L++GQGNFGS+DGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD +  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L E++D  V +I+NP  +L  +ME I+GPDFPTG +I G+ GI NAY TGRG I +
Sbjct: 186 PPHRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIFGKQGILNAYKTGRGRIKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK   +RE IV+ EIPYQVNKA ++E+IA++VREK++  I+++RDESDR+G RV
Sbjct: 246 RAKTHIEKVK-NREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+   +D+ILN LY+ T ++  F + ++A+   +P+ FTL+ +L  F+  R  +V+
Sbjct: 305 VIELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKEPKVFTLLELLHLFLNHRRTIVI 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA+ RAH+L GL  A+ N+DEV+  I+ S +  TAR  LM++          
Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AIL+++L RLTGL R+ + NE   L  EI+    I
Sbjct: 415 ----------------FELTEIQANAILDMKLQRLTGLEREKLENEYKELMEEIERLSAI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  +L  IIK ELL +K++  TPR T IVE   +++ ED I  E MVVT++H GY+KR
Sbjct: 459 LKSEEKLNEIIKTELLEIKEKFTTPRLTEIVESYEEIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPL  Y  Q+RGGKG++ V   ++DF+ D FI +TH +++F +  G +Y  KV+++P   
Sbjct: 519 VPLKQYEKQKRGGKGKTAVTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAG 578

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+GKA++N+L L   E+I  I+P   F ED+S      + F TK+G V+R  L++F  
Sbjct: 579 RTAKGKAVVNLLQLQPDEKIKAIIPTTDFSEDKS------LAFFTKNGIVKRTNLAEFSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I   G  A+ LD  DE++  +    E   + + TK G C+RFP+  +R   GR++ GV G
Sbjct: 633 IRSKGVRAITLDESDELVEAKIVKPETKWLFIITKKGMCIRFPVHDVREM-GRSARGVTG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I    +GD V+                                                 
Sbjct: 692 IRFKYEGDYVVG------------------------------------------------ 703

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +E   QE    EQ +LTVSEKG GKRT + ++R  +R GKG+ A  ++  ++ G +V V 
Sbjct: 704 AETIAQE----EQELLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLT--HKTGDVVGVV 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            V +N  +++++  G +IRV +  IR A R T GV+I      ++VVS+ +
Sbjct: 758 TVENNKDLMVLTSSGKMIRVDMESIRKAGRNTSGVMIVRLESGDKVVSIAK 808



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  KRT+  +F  SN   KG+RA  + + +E+     V P  +   + +++ KG  I
Sbjct: 617 TKNGIVKRTNLAEF--SNIRSKGVRAITLDESDELVEAKIVKP--ETKWLFIITKKGMCI 672

Query: 864 RVPVNEIRIASRATKGVV-IFSTAKDERVVSVERIRESE 901
           R PV+++R   R+ +GV  I    + + VV  E I + E
Sbjct: 673 RFPVHDVREMGRSARGVTGIRFKYEGDYVVGAETIAQEE 711


>gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK408]
          Length = 826

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
 gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
          Length = 869

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/905 (40%), Positives = 561/905 (61%), Gaps = 91/905 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K A
Sbjct: 7   IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNG  GIAVGMATN+PTHNL
Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNL 186

Query: 196 GEVVDGCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+DGC+A ID   ++++  LM+ I+ PDFPTGA I G  G+K+A+ TG+G IV+RG +
Sbjct: 187 SEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGKGRIVLRGKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE T  + E+I+++EIPY VNKA +++ IA+LV EKRI  I+++ DESDRQG R+V+++
Sbjct: 247 EIE-TENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRIVVDV 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A++ V+LN+LY+ T+LQS FSVN +AL   +P+   L  ++KAFV  R EVV+RRTK
Sbjct: 306 KRDANSSVVLNKLYKMTALQSSFSVNNIALVNGRPKLLNLKDLIKAFVDHRHEVVIRRTK 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA  N+DEV+ II+ S +P  A   LM+R              
Sbjct: 366 YDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS++Q+RAI+E+RL +LTGL +D +R E   +   I    +IL + 
Sbjct: 412 ------------FSLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILEND 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +IK EL  +KD+    R+T IV    ++  ED    ++M++T+SH+GY+KR PLS
Sbjct: 460 DLCMKVIKDELQEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGG G  G   RDEDFV  ++  S H ++L F++ G  Y  KV+ +P G+  ++
Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSK 579

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+A+ N+L++   +++     +     D    N+ Y++F TK G +++  L  + +  ++
Sbjct: 580 GRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-- 729
           G  A+ L   D ++ V      N++L+  + G+ +RF  +A+RV  GR + GVRG++L  
Sbjct: 640 GVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGMTLDD 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M                                                   
Sbjct: 699 DSNDEVVGMV-------------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C + K KE  +L VSE+G+GKR++  D+RI+NR GKG++  ++++  + G LVA+  V +
Sbjct: 709 CIKDKEKET-VLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVTE 765

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVDE 905
            + I++++  G  IR+ V+++ +  RAT+GV + +  K ++ + SV ++    E EI +E
Sbjct: 766 ENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEE 825

Query: 906 AESTE 910
               E
Sbjct: 826 KAQRE 830


>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 836

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/901 (41%), Positives = 546/901 (60%), Gaps = 83/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++EE    IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   AEEEMSNRITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     ++DNPD   + LM+++ GPDFPTG V+LG++GI+ AY TG+G+
Sbjct: 182 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVLGKSGIRKAYETGKGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+T   R+QI+V EIPY VNKA ++E+IAEL REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL  ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL IA+ ++DE+++IIR S   E A+ ELM +       
Sbjct: 362 VVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSKYG----- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL++RL RLTGL R+ I  E   L   I + 
Sbjct: 417 ---------------------LSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ R R+  II  EL  ++      RRT +  G + ++EDED I ++D+VVT++H G
Sbjct: 456 KDILAHRERIQQIIYDELKEIQRRFGDARRTELQVGDITNLEDEDLIEQQDIVVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YIKRLPVDEFKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E+I  ++          +  + F TK G V+R  + +F 
Sbjct: 576 PEYGRSAQGIPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFK 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++VE    + ++++ T  G  V F  SA+R   GR + GVRG
Sbjct: 636 NIRSNGLKAINLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSM-GRAAAGVRG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD VI                                      L  DS V     
Sbjct: 695 VRLREGDFVIGAG----------------------------------QLNPDSRV----- 715

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                         L +SEKGFGK+T + ++ I  R GKGI+  +V++ N  G L  +  
Sbjct: 716 --------------LVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKN--GPLAGLTT 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+ ++ I+LV+ +G +IR  V  +    RAT GV +       +V ++ R+ + E  D+ 
Sbjct: 760 VDGDEDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEAADDE 819

Query: 907 E 907
           +
Sbjct: 820 Q 820


>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
 gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
          Length = 850

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/893 (41%), Positives = 544/893 (60%), Gaps = 92/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + KCA
Sbjct: 9   VHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+ G V +IDN      +  L+ ++EI++GPDFPTGA ILGR GI+ AY TGRG I +
Sbjct: 189 REVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  IE  +  + +IVVTE+PY VNKA ++EKIAELV+EK++  I DLRDES+R+G RV
Sbjct: 249 RAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNREGMRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+V++N+L ++T LQ  F V M+AL   +P    L  +L+ ++  +EEVV 
Sbjct: 309 CIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYYLQHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL  A+ ++DEV++IIR S N   A+ +LM+R          
Sbjct: 369 RRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AI+++RL  LTGL R+ + NE   L  +I E   I
Sbjct: 419 ----------------FALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+I++E++ + D+    RRT I     DM  ED I  +D+VV +++ GY+KR
Sbjct: 463 LADEKKLLGVIREEIIVISDKYGDERRTAIGYDEYDMSAEDLIPDDDVVVAMTNFGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   DED++ DL + + H  V+FF++ G VY+ K + +P   
Sbjct: 523 MSSDNFKSQNRGGKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L  GE+IT+I+   E E   ++ Y+  AT++G V++  L ++  + +
Sbjct: 583 RTARGTAIVNLLQLMPGEKITSIIAMKEFE---DDKYLFMATRNGMVKKTSLKEYENVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+      DI L TK G C+RF  + +RV  GR S+GV G+   
Sbjct: 640 NGLQAIVLRENDELIEVKRTDNTEDIFLVTKKGMCIRFHETDVRV-TGRVSMGVIGMKFD 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VI M                   MS+Q                             
Sbjct: 699 EDDEVIGM------------------QMSSQ----------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + +L  SE G+GKRT   +F   NR GKG+R   +  I++ G L+    V+++
Sbjct: 712 ------GECLLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKI--IDKTGDLIGAKLVDNS 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
            +I+L++++G +I++ VN+I I  R T GV + S   D    V S+ ++RESE
Sbjct: 764 REIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAVASIAKVRESE 816


>gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
 gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
          Length = 842

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/880 (40%), Positives = 541/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID+++LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTS-THDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
 gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
          Length = 823

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/901 (42%), Positives = 548/901 (60%), Gaps = 85/901 (9%)

Query: 8   SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +D++   G I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ 
Sbjct: 2   ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  A
Sbjct: 62  PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV +G   +IDNPD+ ++ LM  I+GPDFPTGA+ILGR GIK AY+TGRG
Sbjct: 182 ATNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQ
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R 
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+      
Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL++RL RLTGL R+ I  E   L   I++
Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S +R   IIK+EL  +K +   PRR+ I     D++ ED I  E+MV+T++  G
Sbjct: 456 LKAILASEARQRQIIKEELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +
Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575

Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + ++
Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHEDVNLFMVTEFGVVKRTAIEEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF  S +R+   R + GVR
Sbjct: 633 RNIRRSGLNAINLDEGDRLISVSVTTGNQDILIGTKLGIAIRFSESDVRLMK-RAAHGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+  A VL+AD                                        
Sbjct: 692 GIKLNTGDVVVG-AGVLNAD---------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E   Q        + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV 
Sbjct: 711 -ESEAQ--------VFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVE 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  +EI D
Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIED 819

Query: 905 E 905
           E
Sbjct: 820 E 820



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 16/223 (7%)

Query: 534 VREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           + ED+ +  V+  G VKR  +  YR  RR G   + + + + D +  + + + +  +L  
Sbjct: 609 IHEDVNLFMVTEFGVVKRTAIEEYRNIRRSG--LNAINLDEGDRLISVSVTTGNQDILIG 666

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           + LG    + E   RL       R    +  + LN G+ +        DES      V  
Sbjct: 667 TKLGIAIRFSESDVRL-----MKRAAHGVRGIKLNTGDVVVGAGVLNADESEAQ---VFT 718

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +RN    +    R GK +      +   ++++VE    +++++L ++ G+ +R
Sbjct: 719 ISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIR 778

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           F ++ I V  G+   GV+  +L +GD+V S+A++  A+ + +E
Sbjct: 779 FNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEDEE 821


>gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132]
 gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132]
          Length = 837

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/896 (41%), Positives = 553/896 (61%), Gaps = 89/896 (9%)

Query: 8   SDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++E  E G  I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++GV
Sbjct: 4   NNENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMSELGV 63

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             N+ Y K ARI GEV+GKYHPHG++++YD + RMAQDWSLR  L++GQGNFGSVDGD P
Sbjct: 64  YHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSVDGDSP 123

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL++ A  +L D+ K+TVDFR N+D S QEP VL +R PN+L+NG  GIAVG
Sbjct: 124 AAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTSGIAVG 183

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNL EV +G  A IDNP+I ++ LM  I+ PDFPTG +I G  G+K A+ TGR
Sbjct: 184 MATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTGGIIYGYGGVKAAFETGR 243

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G +VIR V++ E +   +EQIVVTEIPY VNKAAM+EK AELV +K+I  I+ +RDESDR
Sbjct: 244 GRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIRDESDR 303

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+V +LK+ A  +V+LN LY+YT LQ+ FS+N VAL   KPE   L  +++ +V  R
Sbjct: 304 QGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALVHGKPETLNLKQLIEHYVKHR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+ RRT+Y L +A  RAH+L GL IA+ +LDEV+ +IR S +P+ AR  LM++     
Sbjct: 364 LDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEK----- 418

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q RAIL++RL RLTGL RD I  E   +   I+
Sbjct: 419 ---------------------FALSEIQARAILDMRLQRLTGLERDKITEEYKQIKALIE 457

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVS 543
           E   IL+S  +   +IK +LL +K +    RR++I  V G  ++  ED I  ++M+VTV+
Sbjct: 458 ELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNI--EDMIPDDEMLVTVT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR  LS Y++Q RGG G  GV  +D+D+   LF+ + H  +LFF+  G +Y  +V
Sbjct: 516 SQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMATNHNYLLFFTEKGRLYWLRV 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNK 661
           + +P G+  ++G+A+ N++++   ++I  ++      DE    N Y+V  T++G V++  
Sbjct: 576 FEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVKKTL 635

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  + +  ++G IA+ ++  D+++ V      + I++    G+ VRF  S IR   GR +
Sbjct: 636 LEMYSRPRQNGIIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPM-GRGA 694

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+GISLA+ D+ I M  V   DA                                   
Sbjct: 695 TGVKGISLAEDDKAIGMICVNRPDAQ---------------------------------- 720

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L VSEKG+GKR+   D+RI++R  KG++  ++S+  ++G L
Sbjct: 721 ------------------LLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSE--KVGNL 760

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA+  V D D +++++ +G  IR+ V+++R+  R T+GV +      + + S+ RI
Sbjct: 761 VAIKEVTDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASITRI 816


>gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289]
 gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289]
          Length = 860

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/897 (41%), Positives = 553/897 (61%), Gaps = 86/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +  + ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQG R+V+++K
Sbjct: 252 IE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL G +P   +L   +K FV  R +V +RRT++
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRHDVTIRRTRF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L  L  A  N+DEVV +IR S  P  A++ L +R               
Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                 G D      E+Q++AI+++RL++LTGL  D +  E + L   IK+  +IL +  
Sbjct: 416 -----FGFD------ELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKDLQEILDNPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   ++K EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ 
Sbjct: 465 RCREVMKAELQEVKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   A+G
Sbjct: 525 FKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+LSL  G+ +   +     +D++  ++ +VVFATK G V++  L  + +   +G 
Sbjct: 585 RAIQNMLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ ++  DE++ V     +N++++  + G+  RF  S IR   GR S GVRG+ L +  
Sbjct: 645 IAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTM-GRVSTGVRGMRLDEDG 703

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M +V                                   ND   E         
Sbjct: 704 QDEVVGMIVV-----------------------------------NDPVNE--------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LVA+  V D +
Sbjct: 720 -------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITE--KTGKLVAIKNVTDAN 770

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907
            +++++  G +IR+ V E R+  RAT+GV + + AK   V+ SV ++  SE+  + E
Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMETQVE 827


>gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355]
          Length = 916

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1]
          Length = 826

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 836

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/883 (42%), Positives = 551/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+++P+     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ TSLQ+ FS NM+A+    P+  TL  I+  +++ ++EV+ R
Sbjct: 302 IEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FQLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II QE+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPDRISAIIIQEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEVEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+   +++   +N +  F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEEETIQTIINARKED--IDNKFFFFTTRQGLVKRTNASEFGNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ TK G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKDGDELINVLLTDGSEDIIIGTKSGYSVRFEEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD VI  +           RI               D++E                   
Sbjct: 693 DGDLVIGAS-----------RIS--------------DSQE------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V  +
Sbjct: 709 ---------VLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKN--GQLAGLVTVTGH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  + ++    R+T GV +    +D ++V+
Sbjct: 758 EDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVT 800


>gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
 gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
          Length = 829

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/889 (41%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    L+++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG  + +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I                                  L+ DS V    
Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASI 806


>gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594]
          Length = 916

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/900 (41%), Positives = 560/900 (62%), Gaps = 91/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  +  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+++  + Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--DHYLFFATRQGIVKRTNVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R   GR + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                        S D E                    
Sbjct: 693 EGDHLVGATIV------------------------SDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +SE G+GKRT + ++    R GKGI    V+  N  G L  +  V  +
Sbjct: 709 ---------VLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  +  I    R+T GV +    ++ ++++        +VD A+  E
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTF------ALVDAADQKE 811


>gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/892 (40%), Positives = 551/892 (61%), Gaps = 65/892 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +     +K Y KCA
Sbjct: 15  LIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDGDPPAA RYTE R+
Sbjct: 75  YTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 AKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG + 
Sbjct: 195 NEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGKAE 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDESD+ G R+V ELK
Sbjct: 255 IVE-EGNHSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVYELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++AF+++++ RRT +
Sbjct: 314 RDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAF 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R +   D+  L+    
Sbjct: 374 DLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDLAKLLQRAM 432

Query: 436 DSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +Y  +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  +I + LDILSS 
Sbjct: 433 GENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSD 492

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+  IIK+E+ ++K++    RRT I  V G +D+  ED I  E+ V+T +++GY+KR P
Sbjct: 493 ERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDI--EDLIPEEECVLTYTNIGYIKRQP 550

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q
Sbjct: 551 VDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQ 610

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L DF  + ++G
Sbjct: 611 SRGTNIVNLLQLDEGERIAAMMKTSD---FAENKYFICVTKYGKIKRTPLYDFRNVRKNG 667

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DEI +      ++ I++ T LG  + F    IR   GR + GVR I L + 
Sbjct: 668 LRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAAGVRAIKLRED 726

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++  A V   D                 R+++                          
Sbjct: 727 DYIVGAAKVYSDDM----------------RILT-------------------------- 744

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                     V++KG+G+ ++  D+R+ NR G G++   +   ++ G +  +  +  +D 
Sbjct: 745 ----------VTDKGYGRLSALSDYRMQNRGGNGLKNYKIR--DDRGYVCGIRSIQADDD 792

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E  D
Sbjct: 793 VILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETAD 844


>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 813

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/882 (42%), Positives = 530/882 (60%), Gaps = 83/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +  I  EM+ SYLTY+++VI+GRA+PD+RDGLKPV RRIL+ M + G   +K + K A
Sbjct: 9   ILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+ KYHPHG+AA+YD + RMAQD+ LR  L+EGQGNFGS+DGDPPAA RYTE RL
Sbjct: 69  KTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + AH +L D+ K+TVDF  NYD S +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +ID PDI ++ L  II+GPDFPTGA+ILG  GI+ AY TG+GSI +R  + 
Sbjct: 189 GEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALILGHEGIRRAYQTGKGSITLRARTQ 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R +IVVTE+PY VNKA ++E+IAEL R+++I  I DLRDESDR G R+ IEL+
Sbjct: 249 IETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAIELR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  VILNQL++YT+LQ  F + M+AL   +P    L  +L  ++  + EV+VRRT++
Sbjct: 309 RDANPHVILNQLFKYTALQQNFGIIMLALVENRPRLLNLKQMLHYYLQHQLEVIVRRTQF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DRAH+L GL  A+  +DEV+  IR SP  + AR  LM                 
Sbjct: 369 DLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMS---------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +EVQ + IL+++L RLT L R+ ++ E + L   I     +L+S  
Sbjct: 413 ----------NFGFTEVQAQHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLASEK 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               IIKQEL  +K +   PRRTRI     D++ ED I  ED+VVT+SH GY+KRVPLS 
Sbjct: 463 MQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVVVTISHSGYIKRVPLST 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR QRRGG+G  G   ++EDF+  +F  +TH  ++FF+  G VY+ +   +P  S QARG
Sbjct: 523 YRQQRRGGRGVQGAGTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARG 582

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N++ L  GE++ T++P  E +      Y+ FAT+ G V++  +++F  +  +G IA
Sbjct: 583 TAIVNLIPLLPGEKVNTVIPVKEGDQEEG--YIFFATRSGWVKKTAVTEFQNVRSTGIIA 640

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +KL+  D ++        ++I+L +  G  +RF    +R   GR++ GV+GI+L      
Sbjct: 641 IKLEEGDTLVGARLTRGNDEIILVSSAGYALRFHEDDVRPM-GRDTRGVKGITLGP---- 695

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
                        DE +  M                      D  V G            
Sbjct: 696 -------------DEYVVGM----------------------DGVVPG------------ 708

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L VSE G GKRT   ++    R  +G+    +      G LV V  V + + ++L
Sbjct: 709 --ADLLVVSETGVGKRTPLTEYPTYKRGARGVITIQLLP-ERHGRLVGVKAVTEGNDLML 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VS++G LIR+PV E+R + R T+GV + +   ++RV +V ++
Sbjct: 766 VSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQV 807



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 7/107 (6%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL--DSRDEILSVETCTQENDILLTT 700
           +L VV  T  G  +R  L+++    R   G I ++L  +    ++ V+  T+ ND++L +
Sbjct: 710 DLLVVSETGVG--KRTPLTEYPTYKRGARGVITIQLLPERHGRLVGVKAVTEGNDLMLVS 767

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           + G  +R P+  +R  +GRN+ GV+ ++L   D+V ++A V+  D +
Sbjct: 768 EQGVLIRIPVEEVR-RSGRNTQGVQLMNLDANDRVSAVAQVVTRDEE 813


>gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK72]
          Length = 826

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+I+VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADNRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++   D                                             
Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAE 821


>gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/888 (40%), Positives = 545/888 (61%), Gaps = 86/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I  EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM ++G   +K Y KCA
Sbjct: 7   IIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKPYKKCA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y AL RMAQ+WS+R  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 67  RIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q     ++DDL K+TVD   N+D + +EP V+  + PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 127 QLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNIPTHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D CVA IDN DID+D LME ++ PDFPTG  I G  G++ AY TGRG +V+R  + 
Sbjct: 187 GEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIYGMQGVREAYETGRGRVVMRARAE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE    + ++IV+TEIPY VNKA ++++IA+LV EK+I  I++  DESDR+G R+V+++K
Sbjct: 247 IEPGE-NHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMRIVVDVK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+L++ T LQ+ FSVN +AL   +P   +L   +  FV  R +VV+RRT+Y
Sbjct: 306 RDANANVVLNKLFKMTPLQTSFSVNCIALVKGRPRLLSLKDCISNFVNHRHDVVIRRTQY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA  N+DEVV IIR + NP+ A   LM R               
Sbjct: 366 DLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSR--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L EVQ +AI+E+RL +LT L ++ +RNE + L  +I+    ILS   
Sbjct: 411 -----------FELDEVQAKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDED 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SH+GY+KR PL+ 
Sbjct: 460 LCMKVIKDELIEVKEQFGDERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGG G  G   RD DFV  ++  + H ++LFF+  G  +  KV+ +P G+  ++G
Sbjct: 520 FRAQARGGVGSKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAKNSKG 579

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+++  + I   +      D     + YVVF TK+G +++  L ++ +   +G 
Sbjct: 580 RAIQNMLNIDPDDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPRANGV 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-- 731
            A+ +   D ++ V     EN+I++  + G+ +RF  S +R   GR + GVRG+++ +  
Sbjct: 640 NAITIREDDRVIGVRLTNGENEIIIANRNGRAIRFHESKVRAM-GRTATGVRGMTIDEDG 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V                                   ND   E         
Sbjct: 699 SDEVVGMVCV-----------------------------------NDPQTET-------- 715

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   I+ VSE+G+GKR+   D+R++NR  KG++  ++++  + G LVA+  V D +
Sbjct: 716 --------IMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITE--KTGKLVAIKVVTDEN 765

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
            +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV +++
Sbjct: 766 DLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQISSVCKVQ 813


>gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
 gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
          Length = 902

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/908 (41%), Positives = 560/908 (61%), Gaps = 41/908 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   
Sbjct: 4   ANDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNN 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +S+R +L++GQGNFGSVDGD  A
Sbjct: 64  WNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K AH +L D+ ++TV+F  NYDGS +EP+VL  R+P +LVNG  GIAVGM
Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT+IP HNL + + GC+ ++++P+  +D L++I++ PDFPTGA I G TGI+  Y TGRG
Sbjct: 184 ATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIYGLTGIRAGYQTGRG 243

Query: 247 SIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +VIR  SHIE    +G+RE IVV EIPYQVNK+ ++EKI ELVREK +  IA+LRDESD
Sbjct: 244 RVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDESD 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIELKRG +A+V+LNQLY+ T LQ  FS+NMVAL   +P    L  IL  F+  
Sbjct: 304 KDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQPRLLNLKQILNEFLRH 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT + L KAR   H+  G A+A++N+DE++ +I+ S + + AR  LM R+W +
Sbjct: 364 RREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRAWQS 423

Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + + +++   D             +  +  DG  +LS+ Q RAIL + L  LTGL +D+I
Sbjct: 424 ALVSEMLSRSDLDLTLARPEWLPENRGLHPDG-YWLSDEQARAILRMSLRNLTGLDQDEI 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDC 532
             E  SL   I + LDIL+   R+  II+ EL+ ++ +    RR+ I   G  D+ DED 
Sbjct: 483 VKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDERRSEINPFGGGDIADEDL 542

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   +MVVT++H GY+K  P S Y+AQ+RGG+G+     +DEDF+  LF+ +TH  ++ F
Sbjct: 543 IPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCF 602

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVV 649
           ++LG  +  KV+RLP G   +RG+ + N++ L+ GE+++ I+P   FPEDE      YV 
Sbjct: 603 TNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVREFPEDE------YVF 656

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           FAT  G V++ +LS F  ++  G  A+ L   D ++ V   +  +DI+L + LG+ +RF 
Sbjct: 657 FATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGKAIRFN 716

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                 +AG    G      A+ D  +S ++    +   +       +   +        
Sbjct: 717 ----EYWAG----GAGDEDEAEND--VSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGG 766

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                L  +  +   ++ E   +L+     +LT ++ G+GKRT   D+    + G+GI A
Sbjct: 767 LRGMRLPENGRIVSLLTAEIGSDLQ-----VLTATQNGYGKRTPIADYTRKGKGGQGIIA 821

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            D  + N  G L+    V+  D ++L++  G LIR  V ++R   RA  GV + +  +  
Sbjct: 822 IDTGERN--GELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAAGVRLINLDEGT 879

Query: 890 RVVSVERI 897
            +VS+ER+
Sbjct: 880 TLVSLERV 887


>gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK678]
          Length = 826

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEIKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis]
 gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
 gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
 gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
          Length = 830

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/898 (40%), Positives = 557/898 (62%), Gaps = 89/898 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I+ EM+  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y 
Sbjct: 4   EGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG++++Y AL R+AQD++LR  +++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  ++ D+GK+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG   +IDNP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG I +R 
Sbjct: 184 HNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S IE     +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+VI
Sbjct: 244 KSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+ A++++ILNQLY++T LQ  F +NM+AL   +PE   L  IL+ ++ F+E+V+ RR
Sbjct: 304 EIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA  RAH+L GL IA+ ++DEV+ +IR S   + A+  LM +            
Sbjct: 364 TEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+L+L RLTGL R+ I +E N L   I E   IL+
Sbjct: 412 --------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +++L II+ EL  +K +    R+T I     D++ ED I  E++V+T++H GY+KR+ 
Sbjct: 458 DENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRIN 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y +Q+RGG+G   +  +++DFV ++FI STH ++LFF++ G +YK K +++P     
Sbjct: 518 ADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRA 577

Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  ++N+L L+  E+I  ++   E DE S    ++V  TK G +++  +  +  I +S
Sbjct: 578 AKGTNVVNLLQLDPNEKIQAVISIKEFDEES----FLVMCTKKGIIKKTVVGMYKNIRKS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE++SV     ++DI++ T  G  +RF    +R   GRN++GV+GI+L +
Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +                         + +++ +   +N      ++ E +CQ
Sbjct: 693 DDFVVGMEVP------------------------NQESDVLVVSENGFGKRTHVGEYKCQ 728

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                                        +R GKG+    VS  ++ G LV V  V D D
Sbjct: 729 -----------------------------HRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVDEAE 907
           +++L+++ G  IR+ V++I   SR   GV +     DE+V+++ +I   +SE ++++E
Sbjct: 758 ELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 815


>gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
 gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
          Length = 826

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 554/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+I+VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGTADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++   D                                             
Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +  ++  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEANDKEDVAE 821


>gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
 gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
          Length = 848

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/881 (41%), Positives = 544/881 (61%), Gaps = 85/881 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGS+DGD  AA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG  I G +G+++AY TGRG +V+
Sbjct: 182 PTHNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++IVVTEIPY VNKA +++ IA+L  +K+I  I+++ DE+DR+G R+
Sbjct: 242 RAKAEIE-SHPTHDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R EVV+
Sbjct: 301 VIDIKRDANASVVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMAR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS+      +IK ELL VK++    RR+ IV    +   ED    ++MV+T+SH+GY+KR
Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDNRRSEIVYASEEFNPEDFYADDEMVITISHMGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   R+EDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L++   + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIEADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M             IC                     +K+  +      
Sbjct: 694 LDEDGQDEVIGM-------------IC---------------------IKDPET------ 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + I+ VSE G+GKR+   D+R +NR GKG++  +++  ++ G+LVA+  
Sbjct: 714 -----------ETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGSLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEK 801


>gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE  D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+   G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRCVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808


>gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK330]
          Length = 826

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
 gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
          Length = 834

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/890 (42%), Positives = 544/890 (61%), Gaps = 93/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +EM++ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K   K A
Sbjct: 10  IKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPTRKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ RMAQ++S R + I GQGNFGS+DGD  AA RYTE ++
Sbjct: 70  RIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYTEAKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF PN+D S  EP VL AR P++LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDG +A IDNPDI +D LM  I+GPDFPT  ++LG++GIK AY TGRG I IR    
Sbjct: 190 GEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILLGKSGIKEAYRTGRGRIKIRSKVE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           +E T   R+QIVVTEIPY VNK+ ++EKIAELV+EKR+  IADLRDE+D ++G R+VIEL
Sbjct: 250 METTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRIVIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREE 367
           KR A+  +ILNQLY++T LQ  F V M+AL G        +P+   L  +L  +V  ++E
Sbjct: 310 KRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVEHQKE 369

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRT + L KA  RAH+L GL IA+ N+DEV+ +IR + + + A+ +LM+R       
Sbjct: 370 IITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMER------- 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 423 -------------------FALTEIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEY 463

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    +L IIK EL  +K++    RRT     + D + ED I  E++V+T++H+GY
Sbjct: 464 KAILADEQLVLNIIKDELTEIKEKYGDERRTSFDIDVEDFDVEDLIEEEEVVITMTHIGY 523

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    YR+Q+RGGKG + +  R+ DFV  LF  +TH  +LFFS+ G VY+ K + +P
Sbjct: 524 VKRISADTYRSQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G   ARG A++NIL L+  E+ITT++P  E  +   +  ++ ATK G +++  L+++  
Sbjct: 584 EGGRTARGTAIVNILQLDPDEKITTMIPVKEFTA---DKCLIMATKQGIIKKTDLTEYDS 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G I + L   DE+++V    +  DI++ T+ G  +RF    +R    R S+GVRGI
Sbjct: 641 SRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPLK-RTSIGVRGI 699

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D      +V+  D                  ++S D                   
Sbjct: 700 ELRDDD------VVVGMD------------------IVSDDL------------------ 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+L VS+ G+GK TS   +R   R GKG++   V+K  + G LV    +
Sbjct: 718 -----------FVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTK--KTGELVGFCVI 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + + +I++++++G +I++  N+I    R T+GV +      E++ ++ ++
Sbjct: 765 SRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKV 814


>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
 gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
          Length = 870

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/890 (42%), Positives = 549/890 (61%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM + +N     
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-FN----- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 416 --------------------LSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E ++  ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R   GR + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I                                  LK DS V      
Sbjct: 693 RLRDHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 24/159 (15%)

Query: 748 YDERICYMKHMSAQRR--LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           YDE +   K    +RR  L+ G   E+ SL+++  +E             +E  ++T+S 
Sbjct: 469 YDELLDIQKKFGDKRRTELLVG---EVLSLEDEDLIE-------------QEDVVITLSH 512

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ KR ++ +F+  NR G+GI+  +V   + +  L++    + +D ++  ++KG + R 
Sbjct: 513 NGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLIST---STHDVLLFFTNKGKVYRS 569

Query: 866 PVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
              EI   SR  KG+ I +       E++ +V  + E +
Sbjct: 570 KGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGD 608


>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG]
          Length = 870

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/890 (42%), Positives = 549/890 (61%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM + +N     
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-FN----- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 416 --------------------LSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E ++  ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R   GR + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I                                  LK DS V      
Sbjct: 693 RLRDHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 24/159 (15%)

Query: 748 YDERICYMKHMSAQRR--LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           YDE +   K    +RR  L+ G   E+ SL+++  +E             +E  ++T+S 
Sbjct: 469 YDELLDIQKKFGDKRRTELLVG---EVLSLEDEDLIE-------------QEDVVITLSH 512

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ KR ++ +F+  NR G+GI+  +V   + +  L++    + +D ++  ++KG + R 
Sbjct: 513 NGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLIST---STHDVLLFFTNKGKVYRS 569

Query: 866 PVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
              EI   SR  KG+ I +       E++ +V  + E +
Sbjct: 570 KGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGD 608


>gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK353]
          Length = 826

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
          Length = 787

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/870 (42%), Positives = 543/870 (62%), Gaps = 85/870 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           + +++++D G +IR  +  I    RAT GV
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGV 787



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 824

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/902 (43%), Positives = 549/902 (60%), Gaps = 85/902 (9%)

Query: 8   SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +D++   G I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ 
Sbjct: 2   ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  A
Sbjct: 62  PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRG
Sbjct: 182 ATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQ
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R 
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+      
Sbjct: 362 NVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL++RL RLTGL R+ I +E   L   I++
Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIED 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              ILSS +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  G
Sbjct: 456 LKAILSSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +
Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575

Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  GS  +RG A++N+L L  GE +TT++     +    NL++V  T+ G V+R  + ++
Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERVQEDV-NLFMV--TEFGVVKRTAIEEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG  A+ LD  D ++SV       DILL TKLG  +RF  + +R+   R + GVR
Sbjct: 633 RNIRRSGLNAINLDEGDHLISVNVTNGSQDILLGTKLGIAIRFSENDVRLMK-RAAHGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+  A VL+AD                                        
Sbjct: 692 GIKLNAGDVVVG-AGVLNAD---------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E   Q        + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +V+V 
Sbjct: 711 -ESEAQ--------VFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVSVE 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI +
Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGSEIEE 819

Query: 905 EA 906
           +A
Sbjct: 820 DA 821


>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 870

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/890 (42%), Positives = 548/890 (61%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM + +N     
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-FN----- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 416 --------------------LSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E ++  ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R   GR + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I                                  LK DS V      
Sbjct: 693 RLRDHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 24/159 (15%)

Query: 748 YDERICYMKHMSAQRR--LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           YDE +   K    +RR  L+ G   E+ SL+++  +E             +E  ++T+S 
Sbjct: 469 YDELLDIQKKFGDKRRTELLVG---EVLSLEDEDLIE-------------QEDVVITLSH 512

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ KR ++ +F+  NR G+GI+  +V   + +  L++    + +D ++  ++KG + R 
Sbjct: 513 NGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLIST---STHDVLLFFTNKGKVYRS 569

Query: 866 PVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
              EI   SR  KG+ I +       E++ +V  + E +
Sbjct: 570 KGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGD 608


>gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 815

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/887 (41%), Positives = 550/887 (62%), Gaps = 91/887 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++GI  + +T EM+ S++ YA++VI+ RA+PD +DGLKPV RRI+ GM ++G   +K Y
Sbjct: 2   EQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQ +S R +L++G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  ++ D+ KDTVDF PNYDG  +EP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 122 ESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           +HNLGEVVD  +AV  NPDI +  LM+  I GPDFPTGA ILGR  IK AY TG G IV+
Sbjct: 182 SHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYILGRGAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE    +++ I+VTE+PY VNKA ++EKIA  V+EK I  I +LRDESDR+G R+
Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ T+LQ+ F VN +AL   +P+  +L  ++  ++  +E+V+ 
Sbjct: 302 VIELRRDVQPEVILNQLYKLTALQTTFGVNNIALVNGEPKTLSLKEMINVYLEHQEDVIR 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA DRAH+L GL  A+  +D ++ +IR S   E  ++ LM          D 
Sbjct: 362 RRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLM----------DE 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            D                +SE Q +AI E++L RL GL R+ I NELN+L   I +  DI
Sbjct: 412 FD----------------MSERQAKAIREMQLQRLAGLEREKIENELNTLLETIADLKDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+++ R++ II QELL +K +    RRT I++G  D+EDED I  ED+V+++++ GYVKR
Sbjct: 456 LANKERIIAIIDQELLEIKAKYGDKRRTEIIQGSFDIEDEDLIPEEDVVISLTNNGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+AQ RGGKG  G+   ++D V  L  +STH  +L F++ G VY+ K + +P   
Sbjct: 516 MPIDTYKAQNRGGKGIKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFG 575

Query: 611 PQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            QA+G  +IN+L++++ E++ T   I P   DES     ++ F TK G V+R  L +F  
Sbjct: 576 RQAKGLPIINLLNMDKDEQVKTMISITPSEVDESH----FLFFVTKDGLVKRTGLPEFEN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I +SGK+A+ L   DE++ V+    +++ILL    G+ +RF  + +R   GR++ GV+G+
Sbjct: 632 IRQSGKLALTLREGDELVDVKLTNGKSEILLAAANGKAIRFDENDVRPM-GRSASGVKGM 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           ++                                               +DS + G  + 
Sbjct: 691 NV-----------------------------------------------DDSHIIGVTTN 703

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              Q        IL ++EKG+GK +   ++R+S R GKG++  ++++ N  G LV++  V
Sbjct: 704 TEGQN-------ILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKN--GELVSIKAV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             N+ +++++++G +IR+P+ +++ A RAT+GV +    +   V S+
Sbjct: 755 EGNEDLMIITNEGIIIRLPMEQVKSAGRATQGVRLIKVGEGASVSSI 801


>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
 gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
          Length = 831

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/889 (40%), Positives = 551/889 (61%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +IDN D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G R +IVVTEIPYQVNK+ ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-RNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ +   E+I T++   + +      + V  T++G +++ ++S +  I + G
Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLGDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A]
          Length = 858

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/904 (39%), Positives = 553/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  LK +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLKTES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
 gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
          Length = 862

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/897 (40%), Positives = 550/897 (61%), Gaps = 86/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +  + ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQG R+V+++K
Sbjct: 252 IE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RR ++
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L  L  A  N+DEVV IIR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          E+Q++AI+++RL++LTGL  D +  E   L   IK+  +IL++  
Sbjct: 416 -----------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ 
Sbjct: 465 RCKEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+LSL+ G+ +   +     +D+   ++ YVVFATK G V++  L  + +   +G 
Sbjct: 585 RAIQNMLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVKKTSLRAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ ++  DE++ V      N++++  + G+  RF  S IR   GR S GVRG+ L +  
Sbjct: 645 IAININDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDEDG 703

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+VI M +V                                   ND   E         
Sbjct: 704 QDEVIGMIVV-----------------------------------NDPVNE--------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LVA+  V D++
Sbjct: 720 -------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDN 770

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907
            +++++  G +IR+ V E R+  RAT+GV + + AK   ++ SV ++  SE+  + E
Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDIIASVCKVMSSEMESQVE 827


>gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 704

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/700 (49%), Positives = 481/700 (68%), Gaps = 12/700 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           ++  +GK+A+KL   DE++ V+  + E++++L +  G+ V
Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704


>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
 gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
          Length = 809

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/890 (41%), Positives = 558/890 (62%), Gaps = 89/890 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D E +  I  V I  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M  +G+  
Sbjct: 2   ADIENKMNIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +R+ GEVMGKYHPHG++AIYDA  R+AQD++LR  L++GQGNFG++DGD  AA
Sbjct: 62  DKPYKKSSRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK A  +L D+ KDTVDF PNYD + +EPVVL +++PN+LVNG  GIAVGMA
Sbjct: 122 PRYTEVRMQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+D     IDN DI +D LM+ ++GPDFPTGA I+G  GIK AY TGRG 
Sbjct: 182 TNMPPHNLNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V++IE+ + ++ +I+VTEIPYQVNK  ++ KI EL+++KRI  I+DLRDES+ +G
Sbjct: 242 ITVRAVANIEEHN-NKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ ++ILN LY++T +Q+ F V  +AL   +P+   L  ++  +V  + +
Sbjct: 301 IRIVIELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR ++ L KA DRAH++ GL  A+ ++DE+++IIR S +   A+ +LM+R       
Sbjct: 361 VITRRCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYS--DAQEKLMERFG----- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +++Q  +ILE+RL RL GL R+ +++E NSL  EI   
Sbjct: 414 ---------------------FTKIQAESILEMRLRRLQGLEREKLQDEYNSLIKEIARL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL +   +L IIK+EL+ +K++    RRT I     ++E E+ I  ED+V+T++  GY
Sbjct: 453 KEILGNERLILNIIKEELIEIKEKFGDDRRTEIKPNFDEIEIEELIKEEDVVITLTKQGY 512

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   Y+ Q RGGKG   +  +++D+V  LF+ STH+ +LFF++ G VYK K + +P
Sbjct: 513 IKRIPSDTYKVQNRGGKGVVALTTKEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIP 572

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  QA+G+ +IN+L L  GE++  ++P    + + ++ Y++ ATK G ++R  +  F  
Sbjct: 573 EGKRQAKGQNIINLLELMHGEKVNAVIPV---KDAGSDEYLIMATKKGTIKRTSVELFKA 629

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G  A+ L   DE++ V   T E+  +L TK G  ++F +S IR   GR   GVRGI
Sbjct: 630 IRKVGMKAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREI-GRTGQGVRGI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D+V+SM +                                       + EG    
Sbjct: 689 KLDKDDEVVSMNL---------------------------------------ASEG---- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + +L +SE G+GKRT + ++++ NR GKG++   V+  ++ G +V+   V
Sbjct: 706 ----------KHLLVISEYGYGKRTLASNYKVQNRGGKGVKTYKVT--DKTGFVVSSKMV 753

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVER 896
           N +D+II+++  G +IR+ V +I +  R T+GV+I    KDE ++V+V +
Sbjct: 754 NPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAK 803


>gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  + D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+H  ++R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHVLLKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++     D DE                                        
Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVEDDDFVRELVS---TSTHDHLLFFTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609


>gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK405]
          Length = 826

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G   V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++   D                                             
Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAE 821


>gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
 gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
          Length = 842

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/906 (39%), Positives = 551/906 (60%), Gaps = 89/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ ++++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIQNKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DE--RVVSVERIRESEIV 903
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K  DE   V  V    E +I+
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEEDII 821

Query: 904 DEAEST 909
            E + T
Sbjct: 822 AEEDDT 827


>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
 gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
          Length = 853

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/886 (41%), Positives = 544/886 (61%), Gaps = 84/886 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++ I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI
Sbjct: 41  NIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTHDKPFKKSARI 100

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG++++Y+A+ R+AQD+++R LL++G GNFGSVDGD  AA RYTE R+ K
Sbjct: 101 VGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVDGDEAAAMRYTEARMAK 160

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               LL D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNL E
Sbjct: 161 ITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTGIAVGMATNIPPHNLSE 220

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + DG VA+IDN +I +D L+  I+GPDFPTG +I G+ GI  AY TGRG I + G   IE
Sbjct: 221 ICDGIVALIDNREISVDELINYIKGPDFPTGGIINGKQGIYEAYRTGRGKIKVAGKVKIE 280

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +   +E I+VTE+PYQVNKA ++EKIAELVR K++  I+DLRDESDR+G R+VIELK+G
Sbjct: 281 TSKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLRDESDREGIRIVIELKKG 340

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +++ILN LY++T LQ+ F + M+AL    P    L  IL+ ++  R  V+ RR ++ L
Sbjct: 341 EESELILNSLYKFTDLQNTFGIIMLALVNNAPRVLNLKQILENYLEHRYNVITRRVQFEL 400

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKA +RAH+L G  IA+ N+DEV+RIIR S +   AR +L+                   
Sbjct: 401 NKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLI------------------- 441

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +   SE+Q +AIL++RL RLTGL RD I  E   L + I+E   IL+  S+ 
Sbjct: 442 -------ASFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKK 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             IIK E++ +K++    RRT I E  +++  ED I  ED+VVT++  GYVKR  +  Y 
Sbjct: 495 YRIIKDEVIKLKEDFGDKRRTEIKEARVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYH 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGG G +     ++D + D++I     ++L F++ G V+  KV+ +P    QARGK 
Sbjct: 555 SQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKL 614

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + N++ L++ ER++T++   E E       + F TK G V++  L+ F  IN++G  A+ 
Sbjct: 615 ISNLIKLSEDERVSTVIRVREFEKDK---AIFFITKDGVVKKTDLTLFANINKTGIRALT 671

Query: 678 LDSRDEI--LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L   DE+    + + +++++I + T+ G  +RF    +RV  GR + GV+GI+L   D V
Sbjct: 672 LRDEDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVM-GRTAAGVKGITLRDKDYV 730

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  I                                            I+ E+  E   
Sbjct: 731 VAAVI--------------------------------------------INPEKISE--- 743

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854
            E  ++T++E+G+GKRT+  ++++ +R GKGI      KINE  G +V V  V+D  +I+
Sbjct: 744 -ELSVMTITEEGYGKRTALSEYKVQSRGGKGIINL---KINEKTGKIVDVKIVDDKTEIM 799

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++ +GTLIR  V+ + +  RAT GV I     +E+V S  +I E+
Sbjct: 800 LITSEGTLIRTKVDTVSVIGRATSGVRIMKVRNEEKVASAVKIAEN 845



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 6/115 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++EKG+ KRTS   +    R G G+ AT+     E   +  ++   +
Sbjct: 526 IEDLIKDEDVVVTLTEKGYVKRTSIDTYHSQRRGGIGVNATNTV---EDDVIKDMYIAKN 582

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESE 901
            D +++ + KG +  + V EI  A +  +G +I      ++DERV +V R+RE E
Sbjct: 583 LDTLLIFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVREFE 637


>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
 gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
          Length = 822

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/903 (42%), Positives = 543/903 (60%), Gaps = 85/903 (9%)

Query: 8   SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +D++   G I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ 
Sbjct: 2   ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  A
Sbjct: 62  PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRG
Sbjct: 182 ATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R  + IE+ S  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQ
Sbjct: 242 SVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R 
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+      
Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL++RL RLTGL R+ I  E   L   I++
Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  G
Sbjct: 456 LKAILGSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +
Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEV 575

Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + ++
Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF    +R+   R + GVR
Sbjct: 633 RNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+   ++                                          N 
Sbjct: 692 GIKLNAGDVVVGAGVL------------------------------------------NT 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E   Q        + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV 
Sbjct: 710 DESEAQ--------VFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVE 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  +EI +
Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEE 819

Query: 905 EAE 907
           E E
Sbjct: 820 EVE 822


>gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1058]
          Length = 826

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDVSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1087]
          Length = 826

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+ IIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++   D                                             
Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKARGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
 gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
          Length = 815

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/898 (41%), Positives = 554/898 (61%), Gaps = 88/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ K+TVDF  NYD S +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IDVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM R           
Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------YELSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQRRGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    +    +  Y+ F T++G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAEHDDHS--YLFFTTRYGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ TK+G  VRF  + +R   GR + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNM-GRAATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  +++                          D +E                   
Sbjct: 693 TNDYVVGASVI-------------------------SDNQE------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  ++++ N  G L  +  VN +
Sbjct: 709 ---------VLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKN--GPLAGLMAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDE 905
           + ++++++ G +IR  V  I    RAT GV +    K  ++V   SV    E E+ +E
Sbjct: 758 EDLMVITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVNEE 815


>gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
 gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
          Length = 848

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/897 (41%), Positives = 550/897 (61%), Gaps = 86/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNPDI  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IVVTEIPY VNK  ++E IA+LV+E +I  I+++ DE+ RQG R+V+++K
Sbjct: 252 IE-SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDETGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILN+L++ T+LQS FSVN +AL G +P   +L   +K FV  R +V +RR ++
Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRHDVTIRRARF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L  L  A  N+DEVV +IR S  P  A++ L +R               
Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEER--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                 G D      E+Q++AI+++RL++LTGL  D +  E   L   IK+  +IL +  
Sbjct: 416 -----FGFD------ELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILDNPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   ++K EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ 
Sbjct: 465 RCKEVMKAELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FKEQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+LSL+ G+ +   +     ++E   ++ +VVFATK G V++  L  + +   +G 
Sbjct: 585 RAIQNMLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ ++  DE++ V     +N++++  + G+  RF  S IR   GR S GVRG+ L +  
Sbjct: 645 IAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSM-GRVSTGVRGMRLDEDG 703

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M +V                                   ND   E         
Sbjct: 704 QDEVVGMIVV-----------------------------------NDPVNE--------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LVA+  V D +
Sbjct: 720 -------TVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNIT--DKTGRLVAIKNVTDAN 770

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907
            +++++  G +IR+ V E R+  RAT+GV + + AK   V+ SV ++  SE+  + E
Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMESQVE 827


>gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 825

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/895 (43%), Positives = 550/895 (61%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV     Y K A
Sbjct: 12  IQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 72  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEARM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  +L D+ KDTVDF  NYD + QEP +L +R PN+L+NG  GIAVGMATNIP H  
Sbjct: 132 TQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPPHRT 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  V +IDNP   LD +++ + GPDFPTG +I G++GI+ AY +GRG I IR  +H
Sbjct: 192 DEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIYGKSGIREAYESGRGRIKIRAKTH 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  IA++RDESDR+G RVVIELK
Sbjct: 252 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVIELK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RRT +
Sbjct: 311 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKVFTLLELLDLFLSHRKSVVIRRTIF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ N+D +V +IR S +P+ A+  L+ +               
Sbjct: 371 ELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQ--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLTGL RD I NE  +L  EI+    IL S S
Sbjct: 416 -----------FSLSEIQAQAILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILRSES 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L GIIK+ELL +K++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP+  
Sbjct: 465 LLNGIIKEELLEIKEKFSTKRLTTIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVPVRT 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+      D+DF+   F+  TH ++LF +  G +Y  KV+++P  S  A G
Sbjct: 525 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRTAIG 584

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+++L   E+I   +   +  S   N  + F TK+G ++R  LS+F  I   G  A
Sbjct: 585 KAVVNLINLAPDEKIMATITTKDFNS---NKSLAFFTKNGIIKRTNLSEFKNIRSVGVRA 641

Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           + LD  D +++ +  + +  +IL+ T  G CVRF +  +R   GR + GV  I      D
Sbjct: 642 INLDENDALVTAKIISSDIKEILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKMPKD 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI   +V                        + + EE                      
Sbjct: 701 YVIGATVV------------------------ASENEE---------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 IL+VSEKG GKRT   ++RI+NR GKG+ A  ++   + G LV +  V++N  +
Sbjct: 715 ------ILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTP--KTGKLVGIVNVDENMDL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
           ++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  +E E  DE E
Sbjct: 767 MVLTSSGKMIRVDMQSIRKAGRATSGVIIVNV-DDDKVVSIARCPKEEEQDDENE 820


>gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK150]
          Length = 826

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D     +DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
 gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
          Length = 842

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/880 (40%), Positives = 541/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 ARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A ++LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
 gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
          Length = 873

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 86/900 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I                                  LK DS V      
Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817


>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
 gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
          Length = 873

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 86/900 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I                                  LK DS V      
Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817


>gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
 gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
          Length = 844

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/890 (41%), Positives = 542/890 (60%), Gaps = 90/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+  Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID+      +  ++ +MEII+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R VS+IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S R+G RV
Sbjct: 249 RAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREGMRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +V+LNQLY++T LQ  F V M+AL   +P+  +L+ IL  ++  +E+VV 
Sbjct: 309 CIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMSLLEILNHYLKHQEDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S   + A+ ELM R +N       
Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSR-FN------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q++AI+++RL  LTGL R+ +  E   L  +I E   I
Sbjct: 421 ------------------LSDAQSQAIVDMRLRALTGLEREKLETEYAELEKKIAEYKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L + ++    RRT I     D+  ED I RED+V+T++ +GY+KR
Sbjct: 463 LADRKLLLGVIKKEILVISEKYGDDRRTAIGFDEYDISTEDLIPREDVVITMTKMGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   DED+V +LF+ +TH  ++FF++ G  Y+ K + +P   
Sbjct: 523 MSNDTFKSQNRGGKGIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKGYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A+INIL L   E+IT ++P  + +      Y+  ATK G V++  + D+  + +
Sbjct: 583 RTSRGTAIINILQLQPDEKITAMIPIKDFKEGD---YLFMATKKGLVKKTPILDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    E D++L T+ GQC+RF  S +R   GR S+GVRG++L+
Sbjct: 640 TGLAAITLREDDELIEVKITDDERDVILVTQYGQCIRFHESDVRS-TGRTSMGVRGMNLS 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V++M +    DA  +E                                        
Sbjct: 699 DRDEVVAMQL----DAQGEE---------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRT   +F   NR GKG++   +++  + G +V    V  +
Sbjct: 715 ---------LLIVSEKGMGKRTRMEEFTAQNRGGKGVKCYKITE--KTGNVVGAKAVGPD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++++  G +IR+    I +  R T GV + +  + E V S+ ++R +
Sbjct: 764 DEIMIINTDGIVIRMECAGISVLGRITSGVKLINLKEHEEVASIAKVRRA 813


>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 873

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 86/900 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I                                  LK DS V      
Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817


>gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1]
 gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22]
 gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1]
 gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22]
          Length = 858

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
 gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
          Length = 916

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/920 (41%), Positives = 557/920 (60%), Gaps = 42/920 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+D ++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
              W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762
           +RF           N    +  +    D  I   I   +    AD +  +   KH   + 
Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762

Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                       L  D  +   I+     +E  L+   +LT +  G+GKRT   D+   N
Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           + G+G  A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV 
Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877

Query: 882 IFSTAKDERVVSVERIRESE 901
           + +  + E +VS+ER+ E E
Sbjct: 878 LINLDEGETLVSLERVAEDE 897



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906


>gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191]
 gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191]
          Length = 840

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/882 (41%), Positives = 537/882 (60%), Gaps = 82/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S  I +EM+ SY+ YA++VI+GRA+PD+RDGLKP+HRR+L+GM +MG+++NK + K A
Sbjct: 15  IKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMNEMGLKYNKSFKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD+L R+AQD+SLR  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 75  RVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVDGDMAAAMRYTEVRL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  +L+D+ K+TV F  NYDGS QEP VL A+ PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 135 ERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSGIAVGMATNIPTHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D  + VI NP +    LM II+GPDFPTGA+I GR GI + + TG+GS+ ++  + 
Sbjct: 195 SEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIICGRKGIFDYFETGKGSVKVQARAE 254

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE+   G R  IVVTEIPYQVNK  ++E IA LV++K++ DIAD+RDESDR+G R+VIE+
Sbjct: 255 IEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADIRDESDRRGMRLVIEV 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   A V+LN LY++T LQ+ FSVNM+A+   +P    +  ++K +V  R+EVV  RT+
Sbjct: 315 KRDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGRPRILPIKEVMKCYVKHRKEVVTARTR 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA+ R H+L GL IA+ANLD+V++IIR + +P  A+  L++               
Sbjct: 375 FDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALIRE-------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q++AIL++RL +LT L    I  E   L   I E   IL   
Sbjct: 421 ------------FALSEPQSQAILDMRLHQLTQLSSASIEKEQKELLALIAELKGILEDP 468

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L II  EL  +K +  T R+T I    L DM  ED I  ED+V+T+S+ GY KR+PL
Sbjct: 469 QKVLAIIVDELKGLKKDYGTERKTEISNTELSDMTMEDLIEEEDVVITLSNDGYAKRIPL 528

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGGKG  G   ++EDF+  LF+ STH ++L F++ G V+  + + +P G+  +
Sbjct: 529 DTYRTQNRGGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRLS 588

Query: 614 RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +GKA++N+L ++  E+IT+ +   + D  +    Y+   T+ G ++R +L DF  I +SG
Sbjct: 589 KGKAIVNLLQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSG 648

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D + SV+    ++D+++ T+ G+ +RF    IR   GR + GVRGI L K 
Sbjct: 649 IIAIGLEDGDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAM-GRQAKGVRGIRLGKD 707

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M   L      D                                           
Sbjct: 708 DIVVGMEHALKDAPGPD------------------------------------------- 724

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L+V E G+GKRT   ++R  NR G G      ++ N  G +V +  V+++  
Sbjct: 725 -------VLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERN--GKVVGIKLVDESKD 775

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++++++ G  +R+   EIR   R  +GV +   A+ +++  +
Sbjct: 776 LMVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARI 817


>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 824

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/898 (42%), Positives = 557/898 (62%), Gaps = 94/898 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + KCARI 
Sbjct: 12  IDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+++IY AL  MAQDWS+R  L++G GNFGSVDGD  AA RYTE RL K 
Sbjct: 72  GDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HN+ EV
Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPHNIKEV 191

Query: 199 VDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +D  V +IDN     D  +D ++ II+GPDFPTGA ILG  GIK AY TGRG I +R V+
Sbjct: 192 IDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTGRGKIKVRAVT 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  S  + +IVV+E+PY VNKA ++EKIAELV++KRI  I DLRDES+R+G RVVIEL
Sbjct: 252 EIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGMRVVIEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++  +A++ILN+LY++T LQ  F VNM+AL   +P+   ++ +L+ ++A +E+VV RRTK
Sbjct: 312 RKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYLAHQEDVVTRRTK 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA++RAH+L GL IA+ N+DE+++IIR S N   A+ EL++R              
Sbjct: 372 YELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR-------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+VQ +AI+++RL  LTGL R+ + +E N L  +I+    IL+  
Sbjct: 418 ------------FGLSDVQAQAIVDMRLRALTGLERERLESEYNELLAKIEYFEGILADE 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +LL +IK+E+L V+D+    RRT  ++   DMEDED I +ED+++ ++ LGY+KR+   
Sbjct: 466 KKLLTLIKEEILVVEDKYKDDRRTGFMQ-DDDMEDEDLIQKEDIIIAMTKLGYIKRMSPD 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGGKG  G+   D+DF+ D+ + +TH  + FF++ G VY  K +++P  S  AR
Sbjct: 525 NFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTAR 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L L   E+I+ I+P    E+  N+ Y+   TK+G +++ +++ F  I ++G  
Sbjct: 585 GIAIVNLLQLQPDEKISAIIP---SEAKSNDGYLFMVTKNGTIKKCQINLFDNIRKNGLA 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    ++D+++ +K G C+R     IR   GR + GVRG+ L  GD+
Sbjct: 642 AINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRA-VGRGATGVRGMRLNTGDE 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M                                                     +L 
Sbjct: 701 VIGM-----------------------------------------------------QLA 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853
            + +++L VSE G+GKRT   +F++ NR GKGI      K NE  G LV    VN++ +I
Sbjct: 708 SQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIIC---YKDNEKTGKLVGAKLVNEDREI 764

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAEST 909
           +L++ +G +IR+ V+ I I  R   GV + +  +  D ++ S+ +IRE +  +  E +
Sbjct: 765 LLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASIAKIREEKNTESDEES 822


>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
 gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
          Length = 811

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/888 (41%), Positives = 556/888 (62%), Gaps = 92/888 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           TSV+I +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q+G+  NK + K AR
Sbjct: 10  TSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPNKSHKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG+ A+YD + RMAQ++S R +L++G GNFGSVDGD  AA RYTE R+ 
Sbjct: 70  IVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARMS 129

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  LL D+ KDTVDF+PN+D + +EP VL +R PN+L+NG  GIAVGM+TNIP HNL 
Sbjct: 130 KLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMSTNIPPHNLT 189

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG +A+IDNPD+D+  LM+II+GPDFPTG +I+GR GIK A+ TG+G + +R  + I
Sbjct: 190 EVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIMGRKGIKKAFETGKGKVKVRAKTEI 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+   +RE+I+V E+PYQVNKA ++EK A LVR+  +  IADLRDESDR G R+ I+L++
Sbjct: 250 EEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGMRISIDLRK 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A+  ++LN+L+++T LQ  F + M+AL   +PE  +L  +L+ ++  ++EVV RRTKY 
Sbjct: 310 SANPKIVLNKLFKHTQLQRTFGIIMLALVDGEPEVLSLKEVLQHYLEHQKEVVTRRTKYN 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+KA+ R H+L GL  A  N+D VV+ IR S +   A+  L+      SD          
Sbjct: 370 LDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLI------SDFD-------- 415

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       L++ Q +AIL +RL RLTGL  + I +E   L  EI+    IL+S  +
Sbjct: 416 ------------LTKKQAKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEK 463

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           LL IIK E+L +K++    RRT+IV+  +D+  ED I  E++++T++   Y+KR+PL  Y
Sbjct: 464 LLDIIKDEILVLKEKYKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYIKRIPLDTY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R+Q RGG+G  G+    +D V  L+  STH  +LFF++ G  Y+ K +++P  S QA+G 
Sbjct: 524 RSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGT 583

Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           A+IN+L +   ER+T ++P   F  D+      Y++  T+ G V+R +L +F   N +G 
Sbjct: 584 AIINLLDMEPNERVTAVIPVEDFDLDD------YLLMVTEQGIVKRTELQEF-NTNYTGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V   T + DI+L T+LG  +RF  S +R   GR + GV+GI      
Sbjct: 637 IALDLQQNDELIEVRLTTGQEDIILGTELGLAIRFNESEVRSM-GRTARGVKGID----- 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                                   +++Q +++  D      +K+                
Sbjct: 691 ------------------------LASQDKVVGADI-----IKDGGK------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V++KG+GK+T    +R  +R+GKG+    + + ++ G L A+  V ++D++
Sbjct: 709 ------LLVVTDKGYGKQTPLNKYRRQSRAGKGLLT--IKRTDKNGKLTALKVVEEDDEV 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +L+S +G +IR+ V+EI   SR T+GV + S  + +RVVS+  I + +
Sbjct: 761 MLISKEGIVIRMSVSEISSTSRNTQGVNLMSLVEGDRVVSLAHIEDED 808



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 120/254 (47%), Gaps = 15/254 (5%)

Query: 657 VRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           ++R  L  +   +R G+  I +  D++D +  + T +  + +L  T  G+  R     I 
Sbjct: 515 IKRIPLDTYRSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQI- 573

Query: 715 VFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRR--LISGDTE 770
             A R + G   I+L   + ++ ++ A++   D D D+ +  +      +R  L   +T 
Sbjct: 574 PDASRQAKGTAIINLLDMEPNERVT-AVIPVEDFDLDDYLLMVTEQGIVKRTELQEFNTN 632

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
               +  D      + E R   L   ++ I+  +E G   R +  + R   R+ +G++  
Sbjct: 633 YTGLIALDLQQNDELIEVR---LTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKGI 689

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV-IFSTAKDE 889
           D++  +++   V    + D  ++++V+DKG   + P+N+ R  SRA KG++ I  T K+ 
Sbjct: 690 DLASQDKV---VGADIIKDGGKLLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNG 746

Query: 890 RVVSVERIRESEIV 903
           ++ +++ + E + V
Sbjct: 747 KLTALKVVEEDDEV 760



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 23/232 (9%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V  ++ +ED D    +D ++ V+  G VKR  L  +        G   + ++  D + ++
Sbjct: 597 VTAVIPVEDFDL---DDYLLMVTEQGIVKRTELQEFNTNY---TGLIALDLQQNDELIEV 650

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ--GERITTIMPFPE 638
            + +    ++  + LG   +     +      ARG   I++ S ++  G  I        
Sbjct: 651 RLTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKGIDLASQDKVVGADII------- 703

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQEND 695
                  L VV  T  G  ++  L+ + + +R+GK  + +   D   ++ +++   ++++
Sbjct: 704 --KDGGKLLVV--TDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTALKVVEEDDE 759

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           ++L +K G  +R  +S I     RN+ GV  +SL +GD+V+S+A +   D +
Sbjct: 760 VMLISKEGIVIRMSVSEISS-TSRNTQGVNLMSLVEGDRVVSLAHIEDEDGN 810


>gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 848

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/896 (41%), Positives = 556/896 (62%), Gaps = 86/896 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+  +  + K A
Sbjct: 7   LISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 67  RIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEARM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK +  +L D+ KDTVD + N+D + +EP VL  R P +L+NG  GIAVGMATN+P HNL
Sbjct: 127 QKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG  A IDN D+ +D LME ++ PDFPTG  I G  G++ A+ TGRG +V+R  + 
Sbjct: 187 SEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRAKAT 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G RE I+VTEIPYQVNKA M++K A+++ +K+I  I+ +RDESDR G R+V  +K
Sbjct: 247 FEEVKG-RECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVYVIK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++LN+LY+YT+LQS FSVN +AL   +PE   L  ++  FV  R  VVVRRT+Y
Sbjct: 306 RDAIPNIVLNKLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHVVVVRRTEY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA  N+DEV+ IIR S N + AR+ L++R               
Sbjct: 366 ELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIER--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AI+E+RL +LTGL +D +R+E   +   I++  DIL+ + 
Sbjct: 411 -----------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + II++EL  +KD+    RR+ I     D+   D I  + +V+T+S+ GY+KR  L+ 
Sbjct: 460 RRMSIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSLTE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG G      R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS  ++G
Sbjct: 520 YKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKG 579

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N++++ Q + +   +   +  DE   NN +++ ATK G V++  L  + +   +G 
Sbjct: 580 RAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTNGI 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
            A+ +   DE+LSV+  T E+ ++L  K G+ +RF  S  R   GRN+ GVRGI+LA   
Sbjct: 640 NAITIKDDDELLSVKLTTGESQVMLALKSGKAIRFEESKTRPM-GRNASGVRGITLANDQ 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M  V                                   ND  VE N        
Sbjct: 699 DEVIGMVSV-----------------------------------ND--VESN-------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL VSEKG+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V D D 
Sbjct: 714 -------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVAIKNVTDADD 764

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAE 907
           +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V +++ + E +DE +
Sbjct: 765 LMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVKSDDEAIDEED 820


>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 812

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/881 (41%), Positives = 548/881 (62%), Gaps = 96/881 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G RVVIE+K+G   
Sbjct: 249 NGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYG------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++LS  S++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +KD+ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQR
Sbjct: 463 MKKELLELKDKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582

Query: 621 ILSLNQGERIT---TIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE+++    I  F PE E       +VF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVSDTIVIKEFLPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K+   D+I+ V   E  T+E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KIKEDDDIIFVGLIEDVTKE-EILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + ++  G +IR  ++EI    RAT+GV I   A +E+V ++
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800


>gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A
 gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 876

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/855 (43%), Positives = 545/855 (63%), Gaps = 35/855 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G +A +++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + I   + 
Sbjct: 188 TEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYICARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A   V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L KARDRA +L  L+IA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++  
Sbjct: 368 LALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAMLEAG 427

Query: 435 DDSSYT------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           DD++         G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E 
Sbjct: 428 DDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAEL 487

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L IL S  RL+ +I++EL  V+++    RRT I    +D+  ED I +ED+VVT+SH GY
Sbjct: 488 LHILGSADRLMEVIREELELVREQFGDARRTDITANSVDINIEDLITQEDVVVTLSHEGY 547

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  P++ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+++P
Sbjct: 548 VKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQVP 607

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG+ ++N+L L   ER T I+P  E E   N   V  AT  G V++    +F +
Sbjct: 608 EASRGARGRPIVNLLPLEANERYTAILPVREYEEGVN---VFMATASGTVKKTPADEFSR 664

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ L+  DE++ V+  + +++++L +  G+ VRF    +R   GR + GVRGI
Sbjct: 665 PRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAM-GRTATGVRGI 723

Query: 728 SLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK---N 777
            LA  D+V+S+        I+   +  Y +R    ++ +  R      T+ + S+K    
Sbjct: 724 KLAGEDKVVSLIVPRGEGRILTATENGYRKRTAVAEYPTKSRA-----TQGVISIKVTER 778

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           + SV G +  + C +       I+ +++ G   R    +  I  R+ +G+     ++   
Sbjct: 779 NGSVVGAVQVDDCDQ-------IMMITDAGTLVRIRVSEVSIVGRNTQGVILIRTAEDEN 831

Query: 838 IGALVAVF-PVNDND 851
           + AL  V  PV+D +
Sbjct: 832 VVALQRVAEPVDDEE 846


>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
 gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
          Length = 795

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/869 (42%), Positives = 539/869 (62%), Gaps = 86/869 (9%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+ K +  L+ D+ K+T+D+
Sbjct: 61  YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NPDI +
Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT  +ILGR+GI+ AY TGRGSI++R    IE+    ++ I+VTE+PY
Sbjct: 181 AELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIAELVR+K+I  I DLRDESDR G R+V+E++R A+A+V+LN LY++T+L
Sbjct: 241 QVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +NM++L   +P+   L   L  ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 301 QTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLRIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LDEV+ +IR S   + AR+ LM+R                            LSE Q
Sbjct: 361 LDHLDEVITLIRSSKTADIARQGLMER--------------------------FGLSEKQ 394

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E   L   I E   IL+   ++L II++EL  VK+  +
Sbjct: 395 AQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFN 454

Query: 514 TPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT I + G+  +EDED I  +++ +T++H GY+KR+P S Y+ Q RGG+G  G+   
Sbjct: 455 DKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTN 514

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+DFV  L   STH  +LFF++ G VY+ K + +P  S  A+G  +IN+L +++GE +  
Sbjct: 515 DDDFVEQLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNA 574

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  E     ++ Y+ F TK+G  +R  LS F  I  +G IA+ L   DE++SV   + 
Sbjct: 575 IIPIRE---FGDDQYLFFTTKYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSG 631

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           + DI++ T  G  +RF    +R   GRN+ GV+ I+L                       
Sbjct: 632 DKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKAITL----------------------- 667

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                         GD +++  ++        I EE        +  +L V++ G+GKRT
Sbjct: 668 --------------GDEDQVVGME--------IVEE--------DMNVLIVTKNGYGKRT 697

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              ++R+ +R GKG++  +++  N  G LVAV  V   + I+L++  G +IR+PV++I  
Sbjct: 698 PIEEYRLQSRGGKGLKTCNITDKN--GKLVAVKSVTGEEDIMLITAAGIIIRMPVDQISQ 755

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901
             R T+GV +     ++ V +V + ++ E
Sbjct: 756 MGRNTQGVRLIRLENEQEVATVAKAQKDE 784


>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 814

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/886 (40%), Positives = 553/886 (62%), Gaps = 86/886 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I ++ +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M  +G++ NK  
Sbjct: 3   ENQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+GKDTVDF PN+D    EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + +P+I +D L+EII GPDFPTGA+ILG++GIK AY TGRG I  R
Sbjct: 183 PHNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALILGKSGIKEAYKTGRGKIKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE    +RE+I++TEIPYQVNKA ++EKIA+LV+EKR+  I+D+RDESDR+G R+V
Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KR ++ +++LN LY+YT L++ F +  +AL   +P+   L  +++ +V  ++EVV R
Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGEPKILNLKELIEYYVDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KARDR H++ GL IA+ ++DE+++IIR               S++   IK + 
Sbjct: 363 RTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIR--------------SSYDNDQIKKIF 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                  Y         L+EVQ++AIL+++L RL+GL  + +  E + L   I   L IL
Sbjct: 409 -------Y-----DKFKLTEVQSQAILDMQLKRLSGLEIEKLNAENDELARMIDYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +K++    RRT+IV    ++E  +   RED+++T++  GY+KR+
Sbjct: 457 NSEETLINLIIDEMTEIKEKYADDRRTQIVPDEGEIEISELFEREDILITLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+S+G V+  + + +P  S 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG+A+INIL+L  GERIT +M   +      N  +V  TK+G +++    +F  I ++
Sbjct: 577 TSRGQAIINILNLESGERITEMMTLSD---LHKNSQIVLQTKNGTIKKTDAENFANIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    +E ++L++TK G  ++F    +R   GR + GV+ I L K
Sbjct: 634 GIIAISLQENDKLISVRQIDKEEELLISTKNGMTIQFNSKDLRSM-GRIAQGVKAIKLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM I                                                   
Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K +E ++L V+E  +GK+TS  +F+  NR GKG++   V++  + G +V   PV+ ++
Sbjct: 702 --KGEETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKVVDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896
            I++VS  G +IR+ V +I I  R T GV + +   D +R+VSV +
Sbjct: 758 DIMMVSLSGDMIRLSVRDISITGRNTVGVKLKNLTDDKDRIVSVTK 803



 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E    EL  +E  ++T+++ G+ KR     +++ NR GKGI A +  + + I  ++    
Sbjct: 491 EIEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIIT--- 547

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            N +++++  +  G +  +    I  ASR ++G  I +    E   S ERI E
Sbjct: 548 TNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLE---SGERITE 597


>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
 gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
          Length = 828

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/896 (41%), Positives = 548/896 (61%), Gaps = 91/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+  NK Y K A
Sbjct: 10  ILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+ MGK+HPHG+++IYDA+ R+AQD+S R  LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 70  RLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K   ++L D+ KDTVDF+PNYD   QEP V+ A++PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G +A IDNP+I++  LM  I+GPDFPTGA I+G  GI +AY TG+GS   R  +H
Sbjct: 190 TEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASIMGTEGIISAYRTGKGSFRTRAKAH 249

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E+     + +I+VTEIPY VNKA ++EKIAELVREKRI  I DLRDESDR G R+V+EL
Sbjct: 250 VEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +  V+LNQLY++T ++  F VN++AL   +P+   L  I+  F+  +++V+VRRT+
Sbjct: 310 RRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA   AH+L GL IA+  +DEV+ IIR S + ++A+  LM R              
Sbjct: 370 FELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFG------------ 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q++AI+++RL RLTGL R+ I  +   +   I     +L+S 
Sbjct: 418 --------------LSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L IIKQEL  VK++    RRT I      M  ED I  E++V+T+SH GY+KR+PL+
Sbjct: 464 QMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLN 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y++QRRGGKG  G+  R+EDFV  +F  STH  +LFF++ G VY+ K   +P      +
Sbjct: 524 TYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGK 583

Query: 615 GKALINILSLNQG-ERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G AL+N+LS+N   E+IT ++        +N + ++  AT+ G V++  L ++    + G
Sbjct: 584 GTALVNLLSINPSEEKITAVLSI----RKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDG 639

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V     +  I++ TK G C+RF  S +R   GR + GV+GISL K 
Sbjct: 640 LIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKGISLEKE 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+SM ++   +A+                                             
Sbjct: 699 DLVVSMDVIYEEEAE--------------------------------------------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDND 851
                  IL+++E GF KRTS  ++R+  R GKGI AT + +K  ++  L  + P ND  
Sbjct: 714 -------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVMRPEND-- 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            ++++++ G +IR  V+ I    R+ +GV+   T  + +VV++  +   E  +E++
Sbjct: 765 -MMIITEDGIIIRQEVSGISKQGRSAQGVMAMRTG-ESKVVAIAVVDNKEDAEESD 818


>gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20]
 gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20]
          Length = 842

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/880 (40%), Positives = 540/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG+ ++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 ARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A ++LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
 gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
          Length = 822

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/900 (42%), Positives = 554/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S  GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                           TE+                   
Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L V+EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 708 -------QEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+    E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818


>gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12]
 gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 845

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/904 (39%), Positives = 553/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E + +  +I     IL
Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M             IC                  I  L+ +S        
Sbjct: 695 DDDGQDEVIGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 829

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/889 (41%), Positives = 546/889 (61%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +I++R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG  + +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMSADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +I++ T LG  V F    +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I                                  L+ DS V    
Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASI 806


>gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334]
 gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
          Length = 873

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/900 (41%), Positives = 550/900 (61%), Gaps = 86/900 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA  R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++ G +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I                                  LK DS V      
Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817


>gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
 gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
          Length = 822

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/901 (41%), Positives = 550/901 (61%), Gaps = 85/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++GI    +T+EM+ S+++YA++VI+ RA+PD+RDGLKPV RRI+ GM ++G   +K Y
Sbjct: 2   EQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R ++++G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ D+ KDTV+F PNYDG   EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGEV+D  +AV  NPDI +  LME  I+GPDFPTGA ILG++ IK AY TG G I++
Sbjct: 182 PHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYILGKSAIKKAYETGNGLIIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I    G ++ I+V EIPY VNKA ++EK+AE V+EKRI  I ++RDES+R+G R+
Sbjct: 242 RAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++    +VILNQL++ TSLQ+ F VN +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 302 VIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALVNNEPQTLNLKQMITYYLDHQEEVIK 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA DRAH+L GL  A+  +D ++ +IR S   E  ++ LM            
Sbjct: 362 RRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q +AI E++L RL GL R+ I NELN L   I +  DI
Sbjct: 412 ----------------FDMSERQAKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R R+L II+ ELL +KD+    RRT I++G  D+EDED I  ED++++++  GYVKR
Sbjct: 456 LENRERILAIIEAELLQLKDKFADKRRTEIIQGTFDLEDEDLIPVEDIIISLTTNGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ Q RGG+G  G+   ++D V  L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 516 MPVDTYKTQNRGGRGIKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFG 575

Query: 611 PQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L+L++ E + +++    ED       Y+ F T +G V++  + +F  I 
Sbjct: 576 RTAKGLPVVNLLNLDKDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++SV+  T    IL+    G+ +RF  S +R   GR + GV     
Sbjct: 636 QSGKIAIGLKEDDQLVSVKLTTGNAQILVAASNGKLIRFKESDVRKM-GRTASGV----- 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                            R I+ D   +  +  D   EG      
Sbjct: 690 ---------------------------------RGINVDGGHVIGMTTDQ--EG------ 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   QFI+ +SE G+GK +   D+R S+R GKG++  + +   + G LVA+  VN 
Sbjct: 709 --------QFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTA--KTGQLVALRAVNG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++ +++++ +G +IR+P+++++ A R T+GV +   A+   V SVE + ++E  +E  S 
Sbjct: 759 DEDLLIITSEGIVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSSVEVVEKAEEDNEEPSD 818

Query: 910 E 910
           E
Sbjct: 819 E 819


>gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
 gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
          Length = 822

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/900 (42%), Positives = 555/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+  LDEV+ IIR S     A+ +LM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
               R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 EKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASENN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                           TE+                   
Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRTS+ ++    R GKGI+  ++++ N  G L  +  V+ +
Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+   +E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDSARIVTFALVEPEEVEQASEDQE 818


>gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK160]
          Length = 826

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
 gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
          Length = 847

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/889 (40%), Positives = 545/889 (61%), Gaps = 86/889 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCAR+ 
Sbjct: 3   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARVV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYTECRL K 
Sbjct: 63  GEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNLGEV
Sbjct: 123 GEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGEV 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + IE 
Sbjct: 183 IDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAEIE- 241

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +    ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQG R+V+++KR A
Sbjct: 242 SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKRDA 301

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RR ++ L 
Sbjct: 302 NANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQFDLK 361

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA++RAH+L  L  A  N+DEVVRIIR S  P  A++ L +R                  
Sbjct: 362 KAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKR------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                       E+Q++AI+++RL++LTGL  D +  E   L   IK+  +IL++  R  
Sbjct: 404 --------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCK 455

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ ++ 
Sbjct: 456 EVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKE 515

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G+A+
Sbjct: 516 QARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAI 575

Query: 619 INILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            N+LSL  G+ +   +     +D+   ++ YVVFATK G V++  L  + +   +G IA+
Sbjct: 576 QNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAI 635

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--DQ 734
            ++  DE++ V      N++++  + G+  RF  S IR   GR S GVRG+ L     D+
Sbjct: 636 NINEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDDDGQDE 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M +V                                   ND   E            
Sbjct: 695 VVGMIVV-----------------------------------NDPVKE------------ 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LVA+  V D++ ++
Sbjct: 708 ----TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDLM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902
           +++  G +IR+ V E R+  RAT+GV + + AK   V+ SV ++  SE+
Sbjct: 762 IINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEM 810


>gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
 gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
          Length = 807

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/883 (42%), Positives = 537/883 (60%), Gaps = 85/883 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M  +   +N+ + K AR+ 
Sbjct: 10  VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + 
Sbjct: 70  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L DL K+TVDF P YDG+  EP+VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
             G   V+DNP+I L  LM +I GPDFPT   ILG+ GI +AY+TGRG I IR  + +EK
Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFILGKQGIIDAYSTGRGIIKIRSRAFVEK 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + ++E+I+V+EIPYQVNK  +LEKIA  VREK+I  I+++RDESDR G R+VIE+KR A
Sbjct: 250 FAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A VILNQLY++T ++  F + ++A+   +PE  TL G++  F+  R E++VRRT + L 
Sbjct: 310 YALVILNQLYKFTQMEVSFGIILLAIVNGRPEILTLKGMIDHFIKHRREIIVRRTIFDLK 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL  A+  LDEV+ +IR S + + A+  LM                    
Sbjct: 370 KAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLM-------------------- 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE+Q +AIL++RL RLTGL R+ I  E  +L  +I     IL++ S +L
Sbjct: 410 ------AEFQFSEIQAQAILDMRLQRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVL 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK+ELL +++     RR+ I++   +++ ED I  EDMVVTVSH GY+KR P+S+YRA
Sbjct: 464 DIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEEDMVVTVSHQGYIKRNPISLYRA 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG +G   ++EDFV  LF+ S+H   LFF++ G VY +KV  +P G   +RGKA+
Sbjct: 524 QRRGGKGLTGAKPKEEDFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAI 583

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L L +GER+ TI+P  + E      YVV ATK G V++ +L  +      G I +K+
Sbjct: 584 VNLLDLKKGERLATILPVRDYEEGK---YVVMATKMGFVKKTELKAYSHPRSVGTIGLKI 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+++V   + + DI LTTK G+ +RF  S +R   GR + G  GI +  G++V+ M
Sbjct: 641 RENDELIAVRVSSGDQDIFLTTKEGKSIRFKESELRSM-GRVAAGNIGIKMETGNEVVGM 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +                         G+   I ++  +   +    EE          
Sbjct: 700 ETL-------------------------GEGATILTVTENGFGKRTNREEYP-------- 726

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
              T +  G G  T     + S R+G  + A +V+  +E+               ++++ 
Sbjct: 727 ---TQARAGKGVIT----IKTSERNGLVVYAYEVTDQDEL---------------MIITG 764

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            G +IR+   +I +  R T+GV +    + E+VV V +I E +
Sbjct: 765 HGKIIRIRAADISVIGRNTQGVKLIDLGEGEKVVGVAKIMEDD 807


>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
 gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
          Length = 823

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/890 (42%), Positives = 538/890 (60%), Gaps = 85/890 (9%)

Query: 8   SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +D++   G I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ 
Sbjct: 2   ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  A
Sbjct: 62  PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRG
Sbjct: 182 ATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R  + IE+ S  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQ
Sbjct: 242 SVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R 
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+      
Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL++RL RLTGL R+ I  E   L   I++
Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  G
Sbjct: 456 LKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +
Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEV 575

Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + ++
Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF    +R+   R + GVR
Sbjct: 633 RNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+   +                                  L ND S     
Sbjct: 692 GIKLNAGDVVVGAGV----------------------------------LNNDES----- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV 
Sbjct: 713 -----------EAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVE 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSV 894
            V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+
Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASI 809



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 16/214 (7%)

Query: 534 VREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           V ED+ +  V+  G VKR  +  YR  RR G   + + + + D +  + + + +  +L  
Sbjct: 609 VHEDVNLFMVTEFGVVKRTAIEEYRNIRRSG--LNAINLDEGDRLISVNVTTGNQDILIG 666

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           + LG    + E   RL       R    +  + LN G+ +        DES      V  
Sbjct: 667 TKLGIAIRFSEHDVRL-----MKRAAHGVRGIKLNAGDVVVGAGVLNNDESEAQ---VFT 718

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +RN    +    R GK +      +   ++++VE    +++++L ++ G+ +R
Sbjct: 719 ISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIR 778

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           F ++ I V  G+   GV+  +L +GD+V S+A++
Sbjct: 779 FNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVI 812


>gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 857

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/916 (40%), Positives = 561/916 (61%), Gaps = 106/916 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EVVD  V +IDN      +  ++ +++I++GPDFPTGA+ILGR GI+ AY TGRG I +
Sbjct: 189 REVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMILGRRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+PY VNKA ++ KIAELVR+K+I  I DL D S R+G R+
Sbjct: 249 RAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NG-YKPERFTLIGILKAFVAFRE 366
            I+L++ A+A+V+LN LY++T LQ  F VNM++L   NG  +P+   L  +L+ ++A +E
Sbjct: 309 CIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLEYYLAHQE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTKY LNKAR+RAH+L GL  A+ N+DEV+RIIR S N + A++ELM R      
Sbjct: 369 DVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMDR------ 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ +AI+++RL  LTGL R+ +  E   L  +I++
Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYADLMEKIRK 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+ RS LL +I++E+L++ ++    R+T I   + D+  ED I RE+ V+T++ LG
Sbjct: 463 YEAILADRSLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTVITMTKLG 522

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+ +  +R+Q RGG+G  G+   ++D++ +L + +TH  ++FF++ G VY+ K + +
Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVYRLKAYEI 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     ARG A+IN+L L  GE IT ++P  + E      Y++ ATK+G V++  + ++ 
Sbjct: 583 PEAGRTARGTAIINLLQLMPGECITAVIPLRKFEDGH---YLMMATKNGLVKKTPIKEYA 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G  A+ L   DE++ V+    + DI+L TK G C+RF  + +R   GR S+GVRG
Sbjct: 640 NVRKNGLAAITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKETDVR-STGRTSMGVRG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +++  GD+V++M +    D                                         
Sbjct: 699 MNIDDGDEVVAMQLNSQGDC---------------------------------------- 718

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L VS  G GKRTS  +F   NR GKG++   +++  + G ++    
Sbjct: 719 -------------LLIVSANGMGKRTSMGEFTCQNRGGKGVKCYKITE--KTGDVIGARA 763

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------ 900
           VN++++++L++ +G +IR+   +I I  R T GV + +  +   V SV ++R+       
Sbjct: 764 VNEDNEVMLITTEGIIIRIACADISILGRITSGVKLINLTEGVTVASVAKVRDKEEKDTN 823

Query: 901 ------EIVDEAESTE 910
                 EI D AE+ E
Sbjct: 824 AQQAAVEITDSAETEE 839


>gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2]
 gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 858

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli]
 gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli]
          Length = 859

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/840 (44%), Positives = 539/840 (64%), Gaps = 26/840 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ITS+++  E++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK + K A
Sbjct: 9   ITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNKPHKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+AAIYD + RMAQ +S+R +LI+GQGNFGSVDGD  A+ RYTE R+
Sbjct: 69  RVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMRYTEIRM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D CVA++++ ++ ++ LM  I+GPDFPT  +I G+ GI  AY TGRG + +R    
Sbjct: 189 AEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIYGKQGIIEAYHTGRGRLFVRARVQ 248

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE+    ++++I+VTE+PYQVNKA ++EKIAELV+EKRI  I  LRDESD+ G RVVIE+
Sbjct: 249 IEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGMRVVIEV 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG + DV+LN L+  T LQ  F +NMVAL   +P    L  ++  F+A R EVV RRT 
Sbjct: 309 KRGENVDVLLNNLFSQTQLQVTFGINMVALVDGRPVLLNLKQLISEFLAHRREVVTRRTI 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GL IA+AN+D ++ +I+ + +P  A+ +L+ + W+   + +++   
Sbjct: 369 FELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVAEMLTKT 428

Query: 435 DD---SSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           DD     Y +  D   Y LS  Q +AIL+LRL RLTGL ++ I  E       I + LDI
Sbjct: 429 DDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLLDI 488

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   RL  +I++EL+++K+E   PRRT I+    ++ +ED I  ED+VVT+SH GYVKR
Sbjct: 489 LNQPERLCRVIQEELIAIKEEFLDPRRTEIITVDAEINEEDLIPAEDVVVTLSHEGYVKR 548

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L VY AQRRGG+G+S   +++EDF+  L I +TH ++L FSS+G VY  KV++LP GS
Sbjct: 549 QSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGKVYWLKVYKLPEGS 608

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ +IN+L+L + ERIT ++P     +     ++  AT  G  ++  L DF +   
Sbjct: 609 RIAKGRPIINLLALGENERITAVLPIQNYSAEH---FIFMATMKGTTKKTSLIDFSRPRH 665

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ L   D ++ V     + D+LL T  G+ +RF  S +R   GR + GVRGI L 
Sbjct: 666 DGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCM-GRTACGVRGIKLQ 724

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQ------RRLISGDTEEITSLKNDSSVEGN 784
           +G +VIS+ I       Y   +   +H   +       RL S     + ++K  ++  G 
Sbjct: 725 EGQRVISLIIA----KPYGLILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKT-TARNGQ 779

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +     Q L   E  ++ ++ K    RT   + R+++R  +G+R   + ++NE   LV +
Sbjct: 780 VVAA-VQVLPSDE--VMLITNKATLVRTRVAEIRVASRHSQGVR---LIRLNEGETLVGL 833



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILT +  G+GK T  +D R+++R G G+ A   +  N  G +VA   V  +D+++L+++
Sbjct: 740 LILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARN--GQVVAAVQVLPSDEVMLITN 797

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           K TL+R  V EIR+ASR ++GV +    + E +V +ERI E  I +  +S +
Sbjct: 798 KATLVRTRVAEIRVASRHSQGVRLIRLNEGETLVGLERIEEDLITENPDSVD 849



 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E FI   + KG  K+TS  DF  S     GI A D+   +    LV V   +    ++L 
Sbjct: 640 EHFIFMATMKGTTKKTSLIDF--SRPRHDGIIAIDLRDHDR---LVGVALTDGQQDVLLF 694

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +D G +IR   + +R   R   GV      + +RV+S+
Sbjct: 695 TDAGKVIRFNESNVRCMGRTACGVRGIKLQEGQRVISL 732


>gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK115]
          Length = 826

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++   D                                             
Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T  EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821


>gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
 gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
          Length = 856

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/904 (39%), Positives = 553/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +KRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIE-IGQTHDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KAR+RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    NN YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
 gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
          Length = 858

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAGE 825


>gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
          Length = 858

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
 gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
          Length = 859

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/880 (40%), Positives = 540/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 ARAEIESGQA-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALIHGRPKTLNLRDLIKYFIEHRREVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
 gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
          Length = 846

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/886 (40%), Positives = 550/886 (62%), Gaps = 86/886 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+VI
Sbjct: 244 KAEIEEEKG-KNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  +IN++ +   E+I T++   + +      + V  T++G +++ ++  +  I + G
Sbjct: 577 AKGTNIINLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803


>gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
 gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
          Length = 848

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/904 (41%), Positives = 554/904 (61%), Gaps = 94/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   IHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN      D  ++ L+EI++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K+I  I DL D S R+G R+
Sbjct: 249 RAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNM---VALNG-YKPERFTLIGILKAFVAFRE 366
            I+L++ A+A+V+LNQLY++T LQ  F V M   VA+NG  +P+  TL  +LK ++A +E
Sbjct: 309 CIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKHYLAHQE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTKY LNKA++RAH+L GL  A+ N+DEV+RIIR S + + A++ELM R      
Sbjct: 369 DVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDR------ 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ +AI+++RL  LTGL R+ +  E   L  +I++
Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRK 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+ R+ LL +I++E+L++ ++    RRT I     D+  ED I RE+ V+T++ LG
Sbjct: 463 LKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAFDISMEDMIPRENTVITMTKLG 522

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+ +  +R+Q RGG+G  G+   D+D++ +L + +TH  V+FF++ G VY+ K + +
Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEI 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     ARG A+IN+L L  GERIT ++P  + E      Y++ AT+ G V++  + D+ 
Sbjct: 583 PEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGQ---YLMMATRKGLVKKTPIQDYA 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + + G  A+ L   DE++ V+    + DI+L TK GQC+RF  S +R   GR S+GVRG
Sbjct: 640 NVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRS-TGRVSMGVRG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD+V++M +             Y+  +S                +N      +IS
Sbjct: 699 INLLDGDEVVAMQLNTQG--------YYLLVVS----------------ENGMGKRTSIS 734

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E  CQ                             NR GKG++   +++  + G ++    
Sbjct: 735 EFTCQ-----------------------------NRGGKGVKCYKITE--KTGNVIGAKA 763

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN+ ++I++++ +G +IR+  ++I I  R T GV + + +    V S  ++RE E    +
Sbjct: 764 VNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVREKEEDKNS 823

Query: 907 ESTE 910
           E TE
Sbjct: 824 EKTE 827


>gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
          Length = 878

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/898 (40%), Positives = 544/898 (60%), Gaps = 94/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  IMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D +  EP V+  R PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 SKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNP+ID + LM+ I  PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 GEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIYGIQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IVVTEIPY VNK  ++E IAELV+E +I  I+++ DE+ RQG R+V+++K
Sbjct: 252 IE-SDESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDETGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL-------NGYKPERFTLIGILKAFVAFREEV 368
           R A+A VILN+L++ T+LQS FSVN +AL          +P+  +L   +  F+  R EV
Sbjct: 311 RDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLRECISYFIDHRHEV 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            +RRTK+ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R        
Sbjct: 371 TIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQANLEKR-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L  +Q++AI+++RL++LTGL  D +  E   L   I E  
Sbjct: 423 ------------------FELDNLQSKAIVDMRLSQLTGLRMDQLHAEYEDLMKLIDELQ 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L    +   ++K EL +VK +    RRTRI+    +   ED    + +V+TVSHLGY+
Sbjct: 465 SVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFNAEDFYPNDPVVITVSHLGYI 524

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   RD+DF   ++  + H +++FF+  G  Y    + +P 
Sbjct: 525 KRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCYWLHCYDIPE 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNVRRNKLSD 664
           G   ++G+A+ N+L+++  + +   +       EDE   N+ YVVFATK+G V++  L +
Sbjct: 585 GDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVVFATKNGTVKKTNLKE 644

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ +   DE++ V      N+++L  + G+ VRF   AIR   GR S GV
Sbjct: 645 YSRPRANGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFDEQAIRSM-GRVSTGV 703

Query: 725 RGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ +  +GD V+ M +V +A+                                      
Sbjct: 704 RGMRIDDEGDAVVGMIVVNNAET------------------------------------- 726

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE+G+GKR+   D+R +NR GKG++   +++  + G LVA
Sbjct: 727 --------------ETVMVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITE--KTGRLVA 770

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           +  V D + +++++  G +IR+ V E+R+  RAT+GV + + A K++ + SV ++  S
Sbjct: 771 IKNVTDENDLMIINKSGIVIRLAVAEVRVMGRATQGVRLINLARKNDTIASVCKVMSS 828


>gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
 gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
          Length = 955

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/900 (40%), Positives = 548/900 (60%), Gaps = 67/900 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WN ++ K AR+ 
Sbjct: 73  ISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSARVV 132

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+AA Y+ + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE RL+K 
Sbjct: 133 GDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLKKL 192

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  +L  L +D VDF PNYDG+ +EP VL   +P +L+NG  GIAVGMATNIP HNL E 
Sbjct: 193 SSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLRET 252

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           V+ C+ V+ NP+  +D +++++  PDFPTG ++ G + +  AY TGRG  +IR  +HIE+
Sbjct: 253 VNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAIIRAKTHIEE 312

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
             +G+RE I++ EIPYQVNK  +LEKIA+LV EK+I  ++ +RDESD+ G R VIELKRG
Sbjct: 313 WDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELKRG 372

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LN LY+ T LQ  F +N+VAL   +P++  +  IL  F++FR EVV R T +  
Sbjct: 373 ANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVVTRVTMFRR 432

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
           +KAR R +++ G AIA+ANLD+ + IIR S N + A   L++R W A +  ++I      
Sbjct: 433 DKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRANLD 492

Query: 435 ------DDSSYTIG-SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                 +D   T+G +D   Y LS +Q + IL++RL  LTGL ++ I  E   L   I +
Sbjct: 493 KKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKELVDTIID 552

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R+  II   L +V  E    R+T+IV    +++ +D I   +MVVT++  G
Sbjct: 553 LTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTDTG 612

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K      YRAQ+RGG+G+    M++ D +  LF+ +TH  +L F++ G ++   VW +
Sbjct: 613 YIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLHWLNVWDV 672

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  ++G+ ++N+L L   E++T ++P   DE    +LY+  AT  G V++  + DF 
Sbjct: 673 PEGSSSSKGRPIVNMLELTDDEKVTAVLPI-SDEDYAKDLYIFMATADGTVKKTPIGDFK 731

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+G  A+ L   D ++       ++D++L +  G+ VRF    +R   GR + GVRG
Sbjct: 732 NQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-GRAATGVRG 790

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G +VISM                         L+ GD E++T             
Sbjct: 791 MRLDEGQKVISM-------------------------LVCGDDEDVT------------- 812

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +LT +E G+GKR+   ++    R  KGI +   ++ N  G +V+   
Sbjct: 813 -------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN--GKVVSALL 857

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V +ND+IIL++  G L+R  VNEIR+  R T+GV + S  +  ++V +ER+ E++  D A
Sbjct: 858 VKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVTENDDGDNA 917


>gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
 gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
          Length = 854

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/904 (40%), Positives = 552/904 (61%), Gaps = 91/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  IMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 AKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNP I  + LM+ I  PDFPTGA I G  G+KNAY TGRG +V+R  + 
Sbjct: 192 SEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIYGLQGVKNAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE  SG+  ++IVVTEIPY VNKA ++E IA+LV+E ++  I+++ DE+ RQG R+V+++
Sbjct: 252 IE--SGETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDV 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A++ILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R +V +RRT+
Sbjct: 310 KRDANANIILNKLFKMTALQSSFSVNCIALVNGRPRLLNLQECIKYFVEHRHDVTIRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R              
Sbjct: 370 FDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKR-------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E+Q++AI+++RLA+LTGL  D +  E   L   IK   +IL + 
Sbjct: 416 ------------FNLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEILDNP 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R   ++K EL  +K++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+
Sbjct: 464 ERCKEVMKNELYDIKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLT 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++
Sbjct: 524 DFKEQARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDKSSK 583

Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G+A+ N+LSL  G+ +   +     ++E   +  YVVF TK G V++  L  + +   +G
Sbjct: 584 GRAIQNMLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAYSRPRNNG 643

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ ++  DE++ V      +++++  K G+  RF  + +R   GR S GVRG+ L + 
Sbjct: 644 VIAININDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTM-GRVSTGVRGMKLDED 702

Query: 733 --DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M +V                                   NDS           
Sbjct: 703 GEDEVIGMVVV-----------------------------------NDS----------- 716

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LVA+  V D+
Sbjct: 717 -----ENETVMVVSEEGYGKRSLVSDYRLTNRGGKGVKTLNITE--KTGKLVAIKTVTDD 769

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI---VDEA 906
           + +++++  G +IR+ V+E R+  RAT+GV +I  + K + + SV ++R +E+   VDE 
Sbjct: 770 NDLMIINKSGIVIRMAVSECRVMGRATQGVRLINLSKKSDTIASVCKVRSAEMEEKVDEV 829

Query: 907 ESTE 910
            + +
Sbjct: 830 NNAD 833


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/880 (42%), Positives = 539/880 (61%), Gaps = 87/880 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K A
Sbjct: 8   IVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE R+
Sbjct: 68  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF PNYD S +EP VL A++P +LVNG  GIAVGMATNIP HN+
Sbjct: 128 SKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHNM 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG + +ID+PD  +D LM++I+GPDFPT  +ILG+ GI+ AY TGRG I +R  + 
Sbjct: 188 CEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRANAR 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  S  + +I+VTE+PYQVNKA ++EKIA+LVR+K+I  I  L DESDR G R+VI+L+
Sbjct: 248 IETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVIDLR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+VILNQLY++T LQ  F V M+AL   KP+   L  +L  ++A +E+V+ RRT+Y
Sbjct: 308 RDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITRRTRY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ +LD V+  IR S   + AR  L+                 
Sbjct: 368 DLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALIS---------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+   
Sbjct: 412 ----------GFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEG 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L IIK EL +VK +    RRTR+     +++ ED I  ED+V+T++H  Y+KR+ L  
Sbjct: 462 RILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG  G+  +++DFV +L I +TH ++LFF++ G VY  K + +   S  A+G
Sbjct: 522 YRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
            A+IN+L L + E+IT ++        +N + Y+  ATK G V++  L +F  +++ G  
Sbjct: 582 TAIINLLQLEKDEKITAVIQV----KGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLN 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++ V+    E D++L TK G  + F    +R   GR + GV+GISL  GD+
Sbjct: 638 AINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAM-GRAARGVKGISLNDGDE 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M                          +S + E +T                     
Sbjct: 697 VIGMDT------------------------LSPNAEVLT--------------------- 711

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 +T    G    TS Y  R  NR GKG+    V++  + G ++ +  V+ + +++
Sbjct: 712 ------VTAEGYGKRTETSEY--RAQNRGGKGLINLKVTE--KTGDVIGLRVVHPDQELM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           L++ +G +IR  +++I + SR T+GV + ST +++ V S+
Sbjct: 762 LITTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASM 801



 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           + SE   ++L  +E  ++T++   + KR +   +R  NR GKGI+     + + +  L+ 
Sbjct: 489 DTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLI 548

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIR 898
                 +  I+  +++G +  +   EI  ASRA KG  I       KDE++ +V +++
Sbjct: 549 T---TTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVK 603



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 19/201 (9%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYKEKV 603
           G VK+  L  ++   +GG   + + + D+D +  +        ++  +  G   V+ E  
Sbjct: 618 GIVKKTSLVEFKNLHKGG--LNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDD 675

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            R  +G   ARG   +  +SLN G+ +  +      ++   N  V+  T  G  +R + S
Sbjct: 676 VR-AMGRA-ARG---VKGISLNDGDEVIGM------DTLSPNAEVLTVTAEGYGKRTETS 724

Query: 664 DFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++   NR GK  I +K+  +  +++ +     + +++L T  G  +R  IS I V + RN
Sbjct: 725 EYRAQNRGGKGLINLKVTEKTGDVIGLRVVHPDQELMLITTEGIVIRTNISDISVIS-RN 783

Query: 721 SVGVRGISLAKGDQVISMAIV 741
           + GV+ +S  + D V SMA++
Sbjct: 784 TQGVKLMSTGENDIVASMAVM 804


>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
 gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
          Length = 929

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/877 (42%), Positives = 526/877 (59%), Gaps = 91/877 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 80  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  LL
Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP  L AR+PN+LVNG  GIAVGMATNI  HN+GE V+   
Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATC 259

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +ID+PD  +D LM I+ GPDFPTGA+I+G  GI+ +Y TGRGSI +R  +H+E T   R
Sbjct: 260 YLIDHPDATVDELMRIMPGPDFPTGALIMGTDGIRQSYETGRGSITVRAKAHVESTKTGR 319

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPY VNK  + EKIA LV EKRI  I+D+RDES ++G R+VIELK+G    V+
Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+YTSLQ+ F  N +AL    P+R +L  +L+ ++  + +VV RRT++ L KA+ R
Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G   A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 440 AHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 S  QT AILE++L RLTGL RD I  EL  L   I    D+L+   ++LG+IK+
Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKE 533

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +    RRT+I     D+  ED I  EDMVVT++H GYVKR+P+  YRAQ+RGG
Sbjct: 534 EMREIARKFGDKRRTQITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGG 593

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFS+ G VY+ KV  LP G+ QARG A++N+L 
Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLP 653

Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
              GE+I +++    FPEDE      Y++FAT HG V++  ++ + +  R G IA+ +  
Sbjct: 654 FEDGEKIASVISCREFPEDE------YLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKD 707

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +L V      + I++ T  G+ + F    +R   GR++ GVRGI +    +V+ M I
Sbjct: 708 GDRLLGVRRVKPGDKIIMATTAGKAIMFSEDQVRA-TGRDTSGVRGIGMKADAEVLGMEI 766

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                               N S                 E F+
Sbjct: 767 T-----------------------------------NGSG----------------ELFV 775

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T  E+G+GKRT   D+   NR G+G+    ++  +  GAL A+  V    +++++++  
Sbjct: 776 IT--ERGYGKRTPVADYPEQNRGGQGVYTIQMT--DRKGALAAMKVVGPQHELLIITEGA 831

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           T++RV   EI    RAT+GV + S  + +RV +V R+
Sbjct: 832 TVLRVKTAEISQTGRATQGVKMMSVDEGDRVTAVARM 868


>gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A
 gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 847

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/896 (41%), Positives = 546/896 (60%), Gaps = 68/896 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  K I  + I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  TYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ LL+DL K+TV F  NYDG+ + P VL A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV++GC+A ID+ +I L  LME I GPDFPT  +I G+ GI+ AY TG+G I 
Sbjct: 182 IPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKIY 241

Query: 250 IRGVSHIEKTSGDREQIVVT-EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  S IE     +++ ++  E+PYQVNKA +++ IA LV+EK+I  I  LRDESD++G 
Sbjct: 242 IRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K+   A++ILNQLY  T L+  F +NMVAL   +P+  TL  IL AF+  R ++
Sbjct: 302 RIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRKI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R + H+L GL I++ N+D ++ +I+ S   E A+ +L    W +   +
Sbjct: 362 IMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQ 421

Query: 429 DLIDLIDDSSYTIGSDGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               L  ++      D  +        +L+  Q +AILELRL +LT L    + +E   L
Sbjct: 422 YTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
                   +IL + + L  I+K EL+ ++D     RRT+I     D+   D I +E++V+
Sbjct: 482 FKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVVI 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GYVK   LS Y AQ+RGGKG+  V  ++EDF+ +L + +TH  +L FSS G +Y 
Sbjct: 542 TLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP  S  ARG+ ++N+L L+  ERIT I+P  E + S N   +  AT  G V++ 
Sbjct: 602 MKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSIN---IFMATSKGMVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +    G IA+ L + DE++ V      N I+L T  G+ V F    +R   GR 
Sbjct: 659 SLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRK-TGRT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           ++GV+GI + K D+V+S+             +   KH                       
Sbjct: 718 AIGVQGIKIKKSDKVVSL-------------VVPKKH----------------------- 741

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             GN               IL ++E G+GKRT  ++F I +R+ +G  A  ++K N  G 
Sbjct: 742 --GN---------------ILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN--GI 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++    V + DQII++++ GTL+R  V EI I  R T+GV+I  T+K E+VV++++
Sbjct: 783 VIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQK 838



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           K  + +  N S+    +L  KE  ++T+S  G+ K      +    R GKG  A    + 
Sbjct: 516 KRRTKINVNYSDINTSDLINKENVVITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEE 575

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVV 892
           + I  L+     N +D I+  S KG L  + V ++  ASR  +G   V +   + +ER+ 
Sbjct: 576 DFIENLLVA---NTHDIILCFSSKGILYWMKVYQLPEASRHARGRPIVNLLPLSSNERIT 632

Query: 893 SVERIRE 899
           ++  I E
Sbjct: 633 AILPISE 639


>gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
 gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
          Length = 803

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/885 (42%), Positives = 535/885 (60%), Gaps = 84/885 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K ARI G+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  AA RYTE R+ K    +L 
Sbjct: 61  YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGMATNIP HNL EV +G   
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R  + IE+ S  + 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQG R+VIEL+     D++L
Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+LY++T LQ  F V M+AL    P    L  +L  ++  R +V+VRRT++ LNKA  RA
Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+  IR S   E AR  LMQ+                        
Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG---------------------- 398

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q  AIL++RL RLTGL R+ I  E   L   I++   IL+S +R   IIK E
Sbjct: 399 ----LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  +K +   PRR+ I     D++ ED I  E+MV+T++  GY+KR+  +VYR Q +GG 
Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILS 623
           G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +P  GS  +RG A++N+L 
Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  GE +TT++     E    ++ +   T+ G V+R  + ++  I RSG  A+ LD  D 
Sbjct: 575 LAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV   T   DIL+ TKLG  +RF    +R+   R + GVRGI L  GD V+   ++  
Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVL-- 688

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                   N  E   Q        + T+
Sbjct: 689 ----------------------------------------NTDESEAQ--------VFTI 700

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV  V+++D+++L+S++G +I
Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758

Query: 864 RVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  +N+I +   +A  GV   +  + ++V S+  I  +EI +E E
Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803


>gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 828

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/889 (40%), Positives = 548/889 (61%), Gaps = 90/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 10  VHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 70  RIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+GKDTV+F PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID     N   D++ L++I++GPDFPTGA ILG+ GI  AY TGRG I +
Sbjct: 190 TEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATILGKAGISQAYRTGRGKIKV 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE  +  +++IVVTE+PY VNKA +++KIAELV++K++  I ++RDESDR G R+
Sbjct: 250 RAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIRDESDRTGMRI 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R A+A+V+LN+L+++T +Q  F V M++L   +P+   L  +L  ++  +++VV 
Sbjct: 310 CIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLVNNEPKILNLFDMLNYYLEHQKDVVT 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA  N+DEV++IIR + N   A+ +LM+R          
Sbjct: 370 RRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLMER---------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q +AI+++RL  L GL R  +  E N L  +I E   I
Sbjct: 420 ----------------FALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELKAI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LLG+IK EL+ ++D+    RRT I   + D+  ED I RE+ ++T++ LGY+KR
Sbjct: 464 LADEKLLLGVIKDELVLIRDKYGDERRTSIGFDVDDISMEDLIPRENTIITMTKLGYIKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   DED++ +LF+ ++H  ++FF+++G VY+ K + +P  S
Sbjct: 524 MTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPESS 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N++ L   E+IT ++P  E +      Y+  ATK G V+++ + ++  I +
Sbjct: 584 RTARGTAIVNLIQLQPEEKITAVIPINEYKEDH---YLFMATKSGVVKKSPIMEYANIRK 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G +A+ L   DE++ V+    + D+ L TK GQC+RF  + +R   GR ++GVRGI+L 
Sbjct: 641 TGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSI-GRTAMGVRGINLD 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M +    +A                                            
Sbjct: 700 GDDEVIGMQLNSQGEA-------------------------------------------- 715

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSE G GKRT+  +F   +R GKGIR   +++  + G +V V  V++ 
Sbjct: 716 ---------LLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITE--KTGDVVGVKAVDEE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++++++ +G +IR+ V+ I +  R T GV + +   +  V S+ ++R+
Sbjct: 765 NEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDDNVIVASLAKVRD 813


>gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
 gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
          Length = 822

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/900 (42%), Positives = 553/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S  GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTVINAKSDEGSDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                           TE+                   
Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L V+EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 708 -------QEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+    E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818


>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 815

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/893 (41%), Positives = 546/893 (61%), Gaps = 85/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DE++NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K + K A
Sbjct: 8   IMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDKPHKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDA+ R+AQ++S R  L++G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L ++ K+T+DFRPN+D + +EP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 128 SKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  V +IDNP+ +   +M+ I GPDFPTG +ILGR GI++AY TGRG I IR  + 
Sbjct: 188 REVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLILGREGIRSAYRTGRGIIKIRAKTQ 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    + +IVVTE+PYQVNKA  +EKIA+LVREK++  I DLRDESDR G R+VIELK
Sbjct: 248 IERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +A V+LNQ++++T LQ  F + M+AL   KP+   L  +L  ++  +++V+ RRT++
Sbjct: 308 RETNAQVLLNQMFKFTQLQQTFGIIMLALVNNKPQVLNLREMLGHYLEHQKDVITRRTRF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ NLD V+++IR S N E AR  LM+                
Sbjct: 368 DLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLME---------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+++Q +AIL++RL +LTGL R  + +E   L  +I    +IL++  
Sbjct: 412 ----------NFGLTQIQAQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKEILANER 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK E+  ++ +    RRT IV    D   ED I  EDMVVT++H GY+KR+P++ 
Sbjct: 462 LVYQIIKDEMGEIRKKYGDDRRTAIVIDEDDFAVEDLIAEEDMVVTLTHNGYIKRLPVTT 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGG+G +G+  + +DFV  +F+ STH  +  F++ G +Y++KV+ +P      RG
Sbjct: 522 YRVQKRGGRGITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L++  GE +T ++P  +  +     ++   T+ G V++  L +FI   + G IA
Sbjct: 582 VAIVNLLAVEPGEYVTAVIPVKDFNAGQ---FMFMCTRQGYVKKTPLEEFINARKGGLIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     + ++ L T  G  +RF    +R   GR++ GVRGISL  GD+V
Sbjct: 639 LSLAENDELIDVRLTNGKYEVALVTYHGLSIRFAEENVRSM-GRSARGVRGISLGPGDKV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S+ +                                            +  E  QE ++
Sbjct: 698 MSLEV--------------------------------------------LPPEMEQETEM 713

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                L V+EKGFGKRT   ++R   R GKGI    + + N  G ++    V   D++++
Sbjct: 714 -----LVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKN--GPVMGAKMVRPGDEVMM 766

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++ +G +IR    +I I  R T+GV +    + +RVVS+ R+    +V+E E+
Sbjct: 767 ITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARV----VVEENEA 815


>gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271]
 gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271]
          Length = 826

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/896 (41%), Positives = 545/896 (60%), Gaps = 85/896 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM+ +YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K Y K A
Sbjct: 6   ILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GK+HPHG++A+YD+L RM QD+SLR  LI+GQGNFGS+DGD PAA RYTE R+
Sbjct: 66  RIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL
Sbjct: 126 KSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV G +A+I+NP+I +D +ME I  PDFPTG +I G  G+K AY TGRG +VIR  + 
Sbjct: 186 NEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIYGYEGVKQAYRTGRGKVVIRARAV 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE IVVTE+PYQVNK  ++EKI +LV +K+I  IAD+RDESDR G R+VIEL
Sbjct: 246 VEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V ++AL    P+  T+  +++A++  R E+V+RRT+
Sbjct: 306 KRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLTIKEMMEAYILHRNEIVLRRTR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L+ A  +AH+L GL I + NLDEV+  IR SPN   A+  LM+R              
Sbjct: 366 YDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ++AILE+RL RLTG+ R  I N+       I+E   IL++ 
Sbjct: 412 ------------FALTEVQSKAILEMRLQRLTGMERSKIDNDYKETLAHIEELRFILANP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R + IIK+ELL VK      RRT IV    +   ED I +ED+V+TV+H G++KR P+S
Sbjct: 460 ERQMEIIKEELLRVKAVFGDERRTEIVPQEGEFSIEDMIAQEDVVITVTHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   + +DFV  +FI STH  +LFF+S+G  +  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVTGAQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAGRTAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L NI+ L +GE   TI  +   ++  + L++V AT  G +++ ++  F +  R+G  
Sbjct: 580 GRSLANIMELQKGE---TIRAYINVKTFDDPLFIVMATARGLIKKTEIEAFSRPRRNGIA 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ ++  DE++       E+DI++    G  VRF    +R   GR ++GV+GI+L   + 
Sbjct: 637 AISIEDGDELIEARLTDGEHDIIMAKNSGYAVRFAERDVRAM-GRTAMGVKGITLDDDEY 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ISM                                 +TS ++D+S              
Sbjct: 696 CISM---------------------------------VTSKRSDTS-------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ GFGKR+   D+R++ R  +G+    +    ++G LV +  VND D +I
Sbjct: 709 -----LLAVTDNGFGKRSLVDDYRLTRRGARGV--ITLKAHEKVGNLVGLLDVNDGDDLI 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++  G + R  V+ IR+  R T GV +    + +++ +  R+ +++  D  +  E
Sbjct: 762 IITANGIVNRQHVSNIRLTGRNTSGVRLIRLMQGDKISATARVPKTDDPDVIDGPE 817


>gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
 gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
          Length = 830

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/864 (42%), Positives = 524/864 (60%), Gaps = 100/864 (11%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP 
Sbjct: 61  VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R 
Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRS 180

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 181 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 240

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RR
Sbjct: 241 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRR 300

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++
Sbjct: 301 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 360

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                       +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  E
Sbjct: 361 RAGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 419

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+S
Sbjct: 420 IAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLS 479

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 480 HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 539

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660
           ++LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++ 
Sbjct: 540 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKT 593

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------ 708
            L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF            
Sbjct: 594 SLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN 653

Query: 709 --PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
             P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D        
Sbjct: 654 GQPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD-------- 703

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                       +LTV+E G+GKRTS  
Sbjct: 704 --------------------------------------------VLTVTENGYGKRTSLS 719

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R
Sbjct: 720 EYPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGR 777

Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899
            T+GV +  T++ E VV ++RI E
Sbjct: 778 NTQGVTLIRTSEGESVVGLQRIDE 801


>gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132]
 gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132]
          Length = 815

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/887 (41%), Positives = 547/887 (61%), Gaps = 86/887 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +++I  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M  +G  +N+ Y K AR+
Sbjct: 4   TITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMAR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
                L D+ K+TVDF PNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 124 LCSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG V ++DNP+  +++LM+ I+GPDFPTG  I G  G+ +AY TGRGSI IRGV  +E
Sbjct: 184 LIDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGGQGLIDAYTTGRGSIKIRGVVELE 243

Query: 258 KT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +   G +E I++ EIPY +NK+ ++EKIA LV EK+I  +ADLRDESDR+G R+V+ELKR
Sbjct: 244 EARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELKR 303

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           GA AD+I+N LY++T L++ F +NM+A+ G +P    L  +L  F+  R EV++RRTK+ 
Sbjct: 304 GAIADIIINSLYKFTPLETSFGINMMAVVGKRPMLLNLKEVLGHFLEHRREVIIRRTKFD 363

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+K   R H+L GL IA+ N+DEVV++IR S  PE AR  LM R                
Sbjct: 364 LDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSR---------------- 407

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LS++Q +AIL++RL +LTGL  D +  EL  L  +I+    ILS+   
Sbjct: 408 ----------FSLSDIQAKAILDMRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEV 457

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSV 555
           L G+I+ EL  +K    TPR++ ++   LD  D ED I  E+ V+T+S  GY+KR PLS 
Sbjct: 458 LKGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSN 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y AQ+RGGKG +GV   D DF+    + + H  ++ F++ G ++K KV ++P GS  A+G
Sbjct: 518 YTAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N+L L++ E I T +   E     ++ + +F TK G ++R+ +  +     +G  A
Sbjct: 578 GHVNNLLPLDKDEHIATCLSLRE---FADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     E D +L ++ G  +RF I+  R   GR + GV+G++L   D+V
Sbjct: 635 VNLRDHDELMDVREIEPEVDCILVSREGSAIRFNINDARPM-GRATAGVKGMALRPNDEV 693

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++               C          +++GD                  +ER Q    
Sbjct: 694 VA---------------C----------VVTGD------------------QERDQ---- 706

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +LTVSE G+GKRT+   +R+  R GKGI   ++   N+ G +V    VN++D +IL
Sbjct: 707 ----LLTVSEGGYGKRTTIDQYRVQTRGGKGI--LNMRLTNKTGMVVGACMVNESDDVIL 760

Query: 856 VSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++ +  +IR+ V+E+ +   RAT+GV +     D +V+  + + + +
Sbjct: 761 LTSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDNKVIGFDLVMDDD 807



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 14/213 (6%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  G +KR  + +Y   R    G   V +RD D + D+  +      +  S  G   + 
Sbjct: 610 VTKKGMIKRSSIGLYGNCRT--TGIRAVNLRDHDELMDVREIEPEVDCILVSREGSAIR- 666

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             + +    P  R  A +  ++L   + +   +   + E       ++  ++ G  +R  
Sbjct: 667 --FNINDARPMGRATAGVKGMALRPNDEVVACVVTGDQERDQ----LLTVSEGGYGKRTT 720

Query: 662 LSDFIQINRSGK--IAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA 717
           +  +    R GK  + M+L ++  ++ V  C   + +D++L T   + +R  +S +    
Sbjct: 721 IDQYRVQTRGGKGILNMRLTNKTGMV-VGACMVNESDDVILLTSQNKIIRMSVSEVSQTR 779

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           GR + GVR + +   ++VI   +V+  D D  E
Sbjct: 780 GRATQGVRLVRMDDDNKVIGFDLVMDDDEDLGE 812



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 112/284 (39%), Gaps = 36/284 (12%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQE 693
            P++E+      V+  ++ G ++R  LS++    R GK    ++    D I +    T  
Sbjct: 495 IPDEET------VITLSRRGYIKRTPLSNYTAQKRGGKGIAGVQTGDGDFIHTFMLTTNH 548

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             ++L T  G+  +  +  +            G   AKG  V ++   L  D D     C
Sbjct: 549 QHLVLFTNFGKMFKIKVHQV----------PEGSRYAKGGHVNNL---LPLDKDEHIATC 595

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT----------- 802
                 A  R     T++    ++   + GN      + + L++   L            
Sbjct: 596 LSLREFADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAVNLRDHDELMDVREIEPEVDC 655

Query: 803 --VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
             VS +G   R +  D R   R+  G++   +   +E+ A V V    + DQ++ VS+ G
Sbjct: 656 ILVSREGSAIRFNINDARPMGRATAGVKGMALRPNDEVVACV-VTGDQERDQLLTVSEGG 714

Query: 861 TLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEIV 903
              R  +++ R+ +R  KG++    T K   VV    + ES+ V
Sbjct: 715 YGKRTTIDQYRVQTRGGKGILNMRLTNKTGMVVGACMVNESDDV 758


>gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 907

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/916 (42%), Positives = 544/916 (59%), Gaps = 104/916 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 28  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL++
Sbjct: 88  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ K+TVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT   I GR GI+ AY  GRG+I +R  + +E
Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 267

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 328 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 387

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 388 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 431

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 432 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 481

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 482 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 541

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 542 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601

Query: 617 ALINILSLNQGERITTIMP---FPE-----DESSWNN----------------LYVVFAT 652
            ++N++ L  GE++  I+P    PE     DE++                    +V   T
Sbjct: 602 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVT 661

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G IA+ ++  DE+++       + ILL+T  G  +RF  S 
Sbjct: 662 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 721

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+GI+L  GD+V++ A +  A                           +
Sbjct: 722 VRPM-GRTAYGVKGITLEAGDEVVAGAAIPAAAEGEQAHTV------------------L 762

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T   N       ++E R Q                              R GKG+     
Sbjct: 763 TVTANGYGKRTELAEYRVQ-----------------------------TRGGKGLITIKT 793

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV +I   +K+E+V
Sbjct: 794 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 851

Query: 892 VSVERIRESEIVDEAE 907
           V V R+  +E   EAE
Sbjct: 852 VGVARV--AETTPEAE 865


>gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
 gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
          Length = 828

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/894 (41%), Positives = 540/894 (60%), Gaps = 87/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K Y K A
Sbjct: 6   ILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TV F  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL
Sbjct: 126 KNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+G +A+I+NP+I +D +ME I  PDFPT  +I G  G+K AY TGRG +VIR  + 
Sbjct: 186 SEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIYGYEGVKQAYHTGRGKVVIRARAV 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI EL+  K+I  IAD+RDESDR G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V ++AL    P+   L  +++A++  R E+V+RRT 
Sbjct: 306 KRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLNLKEMMEAYLKHRNEIVLRRTT 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L  A  +AH+L GL I + NLDEV+  IR SPN   A+ +LM++              
Sbjct: 366 YELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEK-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q++A+LE+RL RLTG+ RD I  + N     I+E   IL++ 
Sbjct: 412 ------------FGLTELQSKAVLEMRLQRLTGMERDKIEKDYNETLALIEELRFILANP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + + IIK ELL VK      RRT I     +   ED I +ED+V+T++H  ++KR P+S
Sbjct: 460 EKRMQIIKDELLKVKQVYGDERRTEIRPQEGEFSIEDMIAQEDVVITITHETFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   R EDFV  +F+ STH  +LFF++ G  +  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVTGAQARHEDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L NI+ L  GE+I   +     ++  + L+++ AT  G++++ ++  F +  R+G  
Sbjct: 580 GRSLANIMELQPGEKIKAYINV---KTFDDPLFIIMATAKGSIKKTEIEAFSRPRRNGIA 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ ++  DE++       E+DI+L    G  VRF    +R   GR ++GV+GISL +G+ 
Sbjct: 637 AITIEDGDELIDARLTDGEHDIILAKNTGYAVRFAEKDVRPM-GRTAMGVKGISLDEGET 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ISM                                 +TS + D+S              
Sbjct: 696 CISM---------------------------------VTSKRPDTS-------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ GFGKR+   D+R++ R  KG+    +    ++G LV +  VND+D +I
Sbjct: 709 -----LLAVTDNGFGKRSKVEDYRLTRRGAKGV--ITLKAHEKVGHLVGLLDVNDSDDLI 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +++  G + R  V+ IR+  R T GV I    + + + +  R+ +S  VDE E+
Sbjct: 762 IITSNGIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTISATARVPKS--VDEEEN 813


>gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159]
 gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159]
          Length = 825

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/894 (42%), Positives = 561/894 (62%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  IL  ++  ++EV+VR
Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  +K +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+    D+  +++ Y+ F T+ G V+R  +S F  I +
Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDD--FHDKYLFFTTRQGVVKRTSVSAFGNIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T LG  VRF  SA+R   GR + GV+G++L 
Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI         AD+                                    I++ R 
Sbjct: 698 KNDYVIG--------ADH------------------------------------IADSRN 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LT++EKG+GK+T + ++    R GKGI+  +++  N  G L  +  VND+
Sbjct: 714 ---------VLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + I++++D G +IR  V +I    R+  GV +    ++ ++V+   ++ SE+++
Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVK-SEVIE 815


>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
          Length = 829

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/898 (40%), Positives = 557/898 (62%), Gaps = 90/898 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I+ EM+  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y 
Sbjct: 4   EGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG++++Y AL R+AQD++LR  +++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  ++ D+GK+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG   +IDNP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG I +R 
Sbjct: 184 HNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S IE     +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+VI
Sbjct: 244 KSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+ A++++ILNQLY++T LQ  F +NM+AL   +PE   L  IL+ ++ F+E+V+ RR
Sbjct: 304 EIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA  RAH+L GL IA+ ++DEV+ +IR S   + A+  LM +            
Sbjct: 364 TEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+L+L RLTGL R+ I +E N L   I E   IL+
Sbjct: 412 --------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +++L II+ EL  +K +    R+T I     D++ ED I  E++V+T++H GY+KR+ 
Sbjct: 458 DENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRIN 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y +Q+RGG+G   +  +++DFV ++FI STH ++LFF++ G +YK K +++P     
Sbjct: 518 ADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRA 577

Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  ++N+L L+  E+I  ++   E DE S    ++V  TK G +++  +  +  I +S
Sbjct: 578 AKGTNVVNLLQLDPNEKIQAVISIKEFDEES----FLVMCTKKGIIKKTVVGMYKNIRKS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE++SV     ++DI++ T  G  +RF    +R   GRN++GV+GI+L +
Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +                         + +++ +   +N      ++ E +CQ
Sbjct: 693 DDFVVGMEVP------------------------NQESDVLVVSENGFGKRTHVGEYKCQ 728

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                                        +R GKG+    VS  ++ G LV V  V D D
Sbjct: 729 -----------------------------HRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVDEAE 907
           +++L+++  + IR+ V++I   SR   GV +     DE+V+++ +I   +SE ++++E
Sbjct: 758 ELMLINNLHS-IRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 814


>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 828

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/896 (41%), Positives = 547/896 (61%), Gaps = 91/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+  NK Y K A
Sbjct: 10  ILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+ MGK+HPHG+++IYDA+ R+AQD+S R  LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 70  RLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K   ++L D+ KDTVDF+PNYD   QEP V+ A++PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 AKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++G +A IDNP+I++  LM  I+GPDFPTGA I+G  GI +AY TG+GS   R  +H
Sbjct: 190 TEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGSFRTRAKAH 249

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E+     + +I+VTEIPY VNKA ++EKIAELVREKRI  I DLRDESDR G R+V+EL
Sbjct: 250 VEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +  V+LNQLY++T ++  F VN++AL   +P+   L  I+  F+  +++V+VRRT+
Sbjct: 310 RRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA   AH+L GL IA+  +DEV+ IIR S + ++A+  LM R              
Sbjct: 370 FELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFG------------ 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q++AI+++RL RLTGL R+ I  +   +   I     +L+S 
Sbjct: 418 --------------LSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L IIKQEL  VK++    RRT I      M  ED I  E++V+T+SH GY+KR+PL+
Sbjct: 464 QMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLN 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y++QRRGGKG  G+  R+EDFV  +F  STH  +LFF++ G VY+ K   +P      +
Sbjct: 524 TYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGK 583

Query: 615 GKALINILSLNQG-ERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G AL+N+LS+N   E+IT ++        +N + ++  AT+ G V++  L ++    + G
Sbjct: 584 GTALVNLLSINPSEEKITAVLSI----RKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDG 639

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V     +  I++ TK G C+RF  S +R   GR + GV+GISL K 
Sbjct: 640 LIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKGISLEKE 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+SM ++   +A+                                             
Sbjct: 699 DLVVSMDVIYEEEAE--------------------------------------------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDND 851
                  IL+++E GF KRTS  ++R+  R GKGI AT + +K  ++  L  + P ND  
Sbjct: 714 -------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVMRPEND-- 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            ++++++ G +IR  V+ I    R+ +GV+      + +VV++  +   E  +E++
Sbjct: 765 -MMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIG-ESKVVAIAVVDNKEDAEESD 818


>gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713]
          Length = 850

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 557/897 (62%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K A
Sbjct: 8   IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R    
Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAKVE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+++
Sbjct: 248 IDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDVR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT++
Sbjct: 308 RDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM                 
Sbjct: 368 ELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQ------------- 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL RD + NE +   + I +  DIL+   
Sbjct: 415 -------------LSDKQAQAILDMRLVRLTGLERDKVENEYSKTMVAIADYEDILAKPE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +ELL ++++    RRT ++ G +L +EDED I  E++VVT++H GY+KR+P S
Sbjct: 462 RIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     A+
Sbjct: 522 DFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  +IN+L ++  E+I T++  P D+   +  +Y+ F T+ G V+R  +S+F  I ++G 
Sbjct: 582 GIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGL 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE+++V       +I++ T  G  V F    IR   GR++ GVRGI L   D
Sbjct: 642 KAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRDND 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI  AI                                  L+ +S V            
Sbjct: 701 YVIGSAI----------------------------------LEPESKV------------ 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                    +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++ I
Sbjct: 715 -------FVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDEDI 765

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   E  DE E++E
Sbjct: 766 MVITDKGVMIRFNISDVSETGRATLGVRLINLGADSIVSTMTKV---EPEDENENSE 819


>gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
 gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
          Length = 850

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 556/897 (61%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K A
Sbjct: 8   IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R    
Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAKVE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+++
Sbjct: 248 IDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDVR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT++
Sbjct: 308 RDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM                 
Sbjct: 368 ELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQ------------- 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL RD + NE +     I +  DIL+   
Sbjct: 415 -------------LSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +ELL ++++    RRT ++ G +L +EDED I  E++VVT++H GY+KR+P S
Sbjct: 462 RIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     A+
Sbjct: 522 DFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  +IN+L ++  E+I T++  P D+   +  +Y+ F T+ G V+R  +S+F  I ++G 
Sbjct: 582 GIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGL 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE+++V       +I++ T  G  V F    IR   GR++ GVRGI L   D
Sbjct: 642 KAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRDND 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI  AI                                  L+ +S V            
Sbjct: 701 YVIGSAI----------------------------------LEPESKV------------ 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                    +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++ I
Sbjct: 715 -------FVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDEDI 765

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   E  DE E++E
Sbjct: 766 MVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKV---EPEDENENSE 819


>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
 gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
          Length = 827

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/898 (42%), Positives = 539/898 (60%), Gaps = 83/898 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M ++G+    KYV
Sbjct: 7   EGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNKYV 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A + GEV+ KYHPHG+ AIYDA+ RMAQDW++R  L++GQGNFGS+DGDP AA RYTE
Sbjct: 67  KSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+   A  +L D+ K+TVDF+ N+DG+  EP VL +  PN+LVNG  GIAVGMATNIP 
Sbjct: 127 ARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVDG +A++DNP+I LD LME I+GPDFPTG V + RTGI+ A+ TGRGSI +R 
Sbjct: 187 HNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGGV-MSRTGIRQAFETGRGSIRLRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
               E+  G    IVVTEIPYQVNK ++++  A LVR KRI DIA++RDESDRQG R+V 
Sbjct: 246 KVRFEE-RGRGTSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMRIVF 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA  +++LNQLY+YT LQS FSVN +A+    P    L   L  F+  R +VV RR
Sbjct: 305 ELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRSPRVLPLKDALALFLDHRADVVRRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L G  IA+  LDEV+ +IR S +  TAR  L+              
Sbjct: 365 TTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLV-------------- 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ +A+L++RL RLTGL R+ ++ E   L  EI     IL 
Sbjct: 411 ------------AEFGLTEVQAQAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             + L  +IK+EL  VK      RRT+I +   D+  ED I  E MVVT++  GY+KR P
Sbjct: 459 DANELRKVIKRELREVKKNFADARRTQISDNDSDISKEDLIAEEHMVVTLTRGGYIKRTP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+ YRAQ RGG+G +    +++D  + L + +TH  +LFF+  G VY+EK++ LP     
Sbjct: 519 LAAYRAQARGGRGVNAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAERA 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG  L NIL L + ER+ T++   +  +     Y VFAT+ G +++  + ++  +N SG
Sbjct: 579 ARGSHLRNILPLAEDERVATVLSVRDFNAEG---YFVFATRQGMIKKTAIREYGNLNASG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++SV        ++L T+ GQ +RFP + +R   GR + GVRGI L   
Sbjct: 636 LIAINLIEGDELVSVRHGWDGAHVVLATREGQAIRFPEADVR-DTGRATQGVRGIRLKPN 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++S++++              +H+        GD E                      
Sbjct: 695 DALVSLSVIAG------------EHL--------GDAE---------------------- 712

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L V+E G+GKRT   D+ +  R G+G+    V+   + G LV++  V  +++
Sbjct: 713 -------LLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTP--KTGPLVSLDYVRGDEE 763

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++++S+ G LIR  V E+    R ++GV I      +RVVSV  +   E +  A  T+
Sbjct: 764 LLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLGDGDRVVSVMVMLAEETLGRAADTD 821


>gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
 gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 856

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/887 (42%), Positives = 545/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I D +++SYL Y+++VI+GRA+PD +DGLKPVHRRILF M  + +     Y
Sbjct: 6   ENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSARAPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  LI+GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R  K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 ESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++D  + ++DNP+   D LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T G +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR G RVV
Sbjct: 246 AKHHIE-TRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A +++++N LY+ T +++ F + ++A+   +P+ FTL  +L  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLNVFISHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L   I E   IL
Sbjct: 414 ---------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+ IIK+EL  ++++  + R T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 KSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+GKA++N+++L   E+I  I+P  + DES      + F T++G V+R  LS+F  I  
Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS----LAFFTRNGVVKRTSLSEFSNIRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  DEI++ +  T     L+  T LGQC+RF +   R   GR++ GVRGI  
Sbjct: 635 NGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKF 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                     KH          DT+ +     D++V  NI    
Sbjct: 694 --------------------------KH----------DTDFVV----DANVVDNI---- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  EQ +LTVS+KG GKRT+  ++R +NR+G G+ +  +S   + G +V    V++
Sbjct: 710 -------EQELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--KTGNVVGAVLVDE 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +++++  G +IRV +  IR A R T GV+I +    ++VVS+ +
Sbjct: 761 AQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAK 807



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 18/208 (8%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF-FSSLGFVYKEKVW 604
           G VKR  LS +   R    G   +V+ D D +    I +  T  L  F+SLG     +  
Sbjct: 619 GVVKRTSLSEFSNIR--SNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLG-----QCI 671

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKL 662
           R  +   + +G++   +    +G +      F  D +  +N+   ++  ++ G  +R  +
Sbjct: 672 RFDVEKTREQGRSTRGV----RGIKFKHDTDFVVDANVVDNIEQELLTVSQKGIGKRTTV 727

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++ + NR  SG I+MKL ++   ++      +  D+++ T +G+ +R  +  IR  AGR
Sbjct: 728 EEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRK-AGR 786

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD 747
           N+ GV  +++   D+V+S+A     D D
Sbjct: 787 NTSGVIIVNVDAKDKVVSIAKCPKEDDD 814


>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
 gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
          Length = 820

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/894 (41%), Positives = 544/894 (60%), Gaps = 91/894 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I+DE++ S+L Y+++VI  RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y 
Sbjct: 5   EGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKSYS 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+ MGK+HPHG+++IYDA+ RMAQ++S R  LI+G GNFGSVDGD  AA RYTE
Sbjct: 65  KSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A ++L D+ KDTVDF PNYD   +EP VL +++PN+LVNG  GIAVGMATNIP 
Sbjct: 125 VKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDN-----PDID---LDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           HNLGEV+DG   +ID      PD D    + L+++I+GPDFPT  +++G  GI+ AY TG
Sbjct: 185 HNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLMGTEGIQKAYTTG 244

Query: 245 RGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RGS+ IR  + IEK    ++ QI+VTEIP+ VNK+ ++EKIAELV+EK+I  I DLRDES
Sbjct: 245 RGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDLRDES 304

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+VIEL+R  +  +ILN LY++T ++  F +N++AL    P+  TL  +L+ F+A
Sbjct: 305 NRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDGTPKTLTLKAMLEYFIA 364

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV++RRT + L KA+D AH++ GL  A+  +DEV+ IIR S N ETAR  LM R   
Sbjct: 365 HQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLMTR--- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     SE Q++AIL++RL RLTGL R+ +  +   L  E
Sbjct: 422 -----------------------FEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDE 458

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   L +L S   +  IIK EL  ++ + D PRR+ I      M+ ED I  ED+V+TV+
Sbjct: 459 IAYHLAVLQSDKMVREIIKTELGEIRVKYDNPRRSIITIDTTKMDIEDLIADEDVVITVT 518

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+PL+ YR+QRRGG+G +G+   + DFV  LFI STH  +LFFS+ G VY+ + 
Sbjct: 519 HKGYIKRLPLTTYRSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRA 578

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P     A+G A+IN+L+L+Q E+IT  +   +     ++ Y++  T+ G +++  L 
Sbjct: 579 HAIPDAGRTAKGTAMINLLNLSQDEKITATIAVKD---FKDDSYLLTVTRKGIIKKTALE 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++    + G IA+ LD  DE+++V     ++DILL T  G+ +RFP + +R   GR + G
Sbjct: 636 EYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPM-GRTARG 694

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L K + V+ + ++   D D +                                  
Sbjct: 695 VRGMKLGKKEYVVGVDVIGGYDKDME---------------------------------- 720

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +LT++E GF KRT   +FRI NR G G+    V+K  + G L  
Sbjct: 721 ----------------LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNK--KTGKLAG 762

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  V   +++++++D G +IR  V+ I +  R+ +GV    T +D +VV++ + 
Sbjct: 763 IKVVTSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMKTGEDNKVVALAKF 816


>gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
 gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
          Length = 915

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/906 (41%), Positives = 553/906 (61%), Gaps = 38/906 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + D    K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   
Sbjct: 4   THDHRFAKETIPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNN 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R +L++GQGNFGSVDGD  A
Sbjct: 64  WNSSYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K AH +L D+ +DTV+F PNYDGS QEP+V+  R+P++L NG  GIAVGM
Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLG+ VD C+ ++ +PD  +DAL++ I+ PDFPTGA I G  G++  Y TGRG
Sbjct: 184 ATNIPPHNLGDTVDACLQLLADPDTSIDALIDTIKAPDFPTGATIYGLAGVREGYRTGRG 243

Query: 247 SIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +V+RG +HIE     G+RE I++ EIPYQVNKA ++EKI ELVREK +  I+DLRDESD
Sbjct: 244 RVVMRGKTHIEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESD 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL  F+  
Sbjct: 304 KSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQILAEFLRH 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT + L KAR   H+  G A+A++N+D ++++I+ S +   A+ +L+ R W +
Sbjct: 364 RREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQS 423

Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
             + D++   D             +  +  DG  YLS++Q  AIL + L  LTGL +D I
Sbjct: 424 GLVGDMLSRTDLDLNMARPEGLPENLGLREDG-YYLSDLQADAILRMSLRNLTGLDQDTI 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             +  ++  +I + LDIL+   R+  II  EL+ +K     PRR+ I     D+ DED I
Sbjct: 483 LADYKTIMAQIIDFLDILAKPERITQIIHDELIEIKTNFGDPRRSEINPFGGDIADEDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  ++ F+
Sbjct: 543 PPREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVF 650
           + G  +  KV++LP G   +RG+ + N++ L++ E+++ I+P   FPEDE      YV F
Sbjct: 603 NHGRCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRDFPEDE------YVFF 656

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++ +LS F  +++ G  A+ L   D ++ V   +  NDI+L + LG+ +R   
Sbjct: 657 ATAMGVVKKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIR--- 713

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                +  R+S          GD   +       D + +      KH        SG   
Sbjct: 714 --FNEYWERSSD-----DEETGDDNDTEISGSQEDDNAESAPISGKHGVRPSGRGSGGLR 766

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +   +N   V        C++ +L+   +LT +  G+GKRT    +   N+ G+G  A 
Sbjct: 767 GMRLPENGRIVSLITFAPECEQSELQ---VLTATANGYGKRTPIASYSRKNKGGQGNIAI 823

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           +  + N  G LVA   V+++D ++L++  G LIR  V +IR   RA  GV + +  + E 
Sbjct: 824 NTGERN--GDLVAATLVSESDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGET 881

Query: 891 VVSVER 896
           +VS+ER
Sbjct: 882 LVSLER 887


>gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
 gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 884

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/893 (40%), Positives = 549/893 (61%), Gaps = 86/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  + V  N+
Sbjct: 2   QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K++K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 62  KHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L+K +  +L DL KDTVDF+ N+D S  EP V+  + P +LVNG  GIAVGMATN
Sbjct: 122 YTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E +D  VA IDN +I +D LM+ I  PDFPTG +I G  G+++A+ TGRG IV
Sbjct: 182 MAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   + E+  G+R  I+VTEIPYQVNKA M+ + AELV++++I  I ++RDESDRQG R
Sbjct: 242 LRAKINFEEV-GNRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V ELK  A  +V+LN LY+YTSLQ+ FSVN +AL   +PE+  L  I+  FV  R EVV
Sbjct: 301 IVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHEVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +RRT++ L KA++RAH+L G    +    +LD+ + IIR S NP  A+  LM+       
Sbjct: 361 IRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE------ 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AIL+LRLARLTG+  D IR E + +   I++
Sbjct: 415 --------------------FDLSDLQAQAILDLRLARLTGMELDKIRAEYDEIMNLIRD 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++ SR   IIK EL+ +K++    RR+ I     +M  ED I  E +V+T+SH G
Sbjct: 455 FEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  +  +V+ +
Sbjct: 515 YIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEI 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           P GS  ++G+A+ N++++   ++I   +   +  D    N + VV  TK+G +++  L  
Sbjct: 575 PEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEA 634

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+++   D++L     + +++I++ TK G+C+RFP    R   GR S+GV
Sbjct: 635 YSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKARA-VGRGSIGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGISL   D+VI M +V                                   ND      
Sbjct: 694 RGISLEDDDEVIGMIVV-----------------------------------ND------ 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     ++ + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+
Sbjct: 713 ----------VENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGNLIAI 760

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D D +++++  G  IR+ +NE+R+  R T+GV + +   ++ + ++ ++
Sbjct: 761 QNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAAIAKV 813


>gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K]
 gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K]
          Length = 906

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/916 (42%), Positives = 540/916 (58%), Gaps = 104/916 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL+K
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ K+TVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT   I GR GI+ AY  GRG+I +R  + +E
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 327 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 481 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600

Query: 617 ALINILSLNQGERITTIMP---FPEDE---------------------SSWNNLYVVFAT 652
            ++N++ L  GE++  I+P    PE                             +V   T
Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G IA+ ++  DE+++       + ILL+T  G  +RF  S 
Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+GI+L  GD+V++ A +  A                           +
Sbjct: 721 VRPM-GRTAYGVKGITLEAGDEVVAGAAIPAAAEGEQAHTV------------------L 761

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T   N       ++E R Q                              R GKG+     
Sbjct: 762 TVTANGYGKRTELAEYRVQ-----------------------------TRGGKGLITIKT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV +I   +K+E+V
Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850

Query: 892 VSVERIRESEIVDEAE 907
           V V R+  +E   EAE
Sbjct: 851 VGVARV--AETTPEAE 864


>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 862

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/871 (43%), Positives = 536/871 (61%), Gaps = 60/871 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  + + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I NPD+    L++II GPDFPTG  ILGR+GI +AY TGRGSI +RGV+
Sbjct: 188 LGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DRE I++T++PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR G RV
Sbjct: 248 QIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRDGMRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L+ F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLDFRVETIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  +A+ EL+Q           
Sbjct: 368 RRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS VQ  AIL+++L RLT L  + I  E   L ++I +  DI
Sbjct: 418 ----------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+  II+ EL  +K    TPRRT IV    ++ D D I  E  ++ ++  GY+KR
Sbjct: 462 LARRERIEAIIEDELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + AQ+R  +G++   ++D+D V        H  VLFFS  G VY    +++P  S
Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + + E+IT+I+   E      ++++V  T++G +++  LS F  I  
Sbjct: 582 RTARGIPIVQMLPIPKDEKITSIVAVSE---FREDVFLVMLTRNGYIKKTALSAFSNIRT 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L   D++  V    +E+ I+L T+ G  + F     ++   GR + GV+ + L
Sbjct: 639 NGLIAISLGDGDQLRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPLGRATRGVKAMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD++ISM +                 + AQ     GD  E      D  V  N +EE 
Sbjct: 699 KKGDELISMDV-----------------LPAQVTAGIGDAAE------DEDVLENETEEL 735

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +E   +  +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++  VN 
Sbjct: 736 TEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFK--SKTDCLASLHVVNA 793

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            D++++VS++G +IR  V+ I + SRA  GV
Sbjct: 794 EDELMIVSNRGIIIRQAVDAISMQSRAATGV 824


>gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
 gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
          Length = 803

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/885 (42%), Positives = 534/885 (60%), Gaps = 84/885 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K ARI G+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA  R+AQD++ R LL++G GNFGS+DGD  AA RYTE R+ K    +L 
Sbjct: 61  YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGMATNIP HNL EV +G   
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R  + IE+ S  + 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQG R+VIEL+     D++L
Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+LY++T LQ  F V M+AL    P    L  +L  ++  R +V+VRRT++ LNKA  RA
Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+  IR S   E AR  LMQ+                        
Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG---------------------- 398

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q  AIL++RL RLTGL R+ I  E   L   I++   IL++ +R   IIK E
Sbjct: 399 ----LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILANEARQRQIIKDE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  +K +   PRR+ I     D++ ED I  E+MV+T++  GY+KR+  +VYR Q +GG 
Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILS 623
           G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +P  GS  +RG A++N+L 
Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  GE +TT++     E    ++ +   T+ G V+R  + ++  I RSG  A+ LD  D 
Sbjct: 575 LAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV   T   DIL+ TKLG  +RF    +R+   R + GVRGI L  GD V+   ++  
Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVL-- 688

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                   N  E   Q        + T+
Sbjct: 689 ----------------------------------------NTDESEAQ--------VFTI 700

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV  V+++D+++L+S++G +I
Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758

Query: 864 RVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  +N+I +   +A  GV   +  + ++V S+  I  +EI +E E
Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803


>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
 gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 831

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/886 (40%), Positives = 545/886 (61%), Gaps = 86/886 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL R+AQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G R +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KADIEEEKG-RNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +V+LNQLY++T LQ  F + M+AL   +P+   L  IL  ++ F++EV+ RR
Sbjct: 303 ELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYLEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L   I     IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL  +K++    RRT IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELTEIKNKYGDERRTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ +   E+I T++   + +      + V  T++G +++ ++  +  I + G
Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIVKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+ I+L + 
Sbjct: 634 LIAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPM-GRTASGVKAITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMDVVLEDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803


>gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 850

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/897 (41%), Positives = 556/897 (61%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K A
Sbjct: 8   IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R    
Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAKVE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+++
Sbjct: 248 IDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDVR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT++
Sbjct: 308 RDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM                 
Sbjct: 368 ELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQ------------- 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL RD + NE +     I +  DIL+   
Sbjct: 415 -------------LSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +ELL ++++    RRT ++ G +L +EDED I  E++VVT++H GY+KR+P S
Sbjct: 462 RIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     A+
Sbjct: 522 DFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  +IN+L ++  E+I T++  P D+   +  +Y+ F T+ G V+R  +S+F  I ++G 
Sbjct: 582 GIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGL 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE+++V       +I++ T  G  V F    IR   GR++ GVRGI L   D
Sbjct: 642 KAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRDND 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI  AI                                  L+ +S V            
Sbjct: 701 YVIGSAI----------------------------------LEPESKV------------ 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                    +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++ I
Sbjct: 715 -------FVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDEDI 765

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   E  DE E++E
Sbjct: 766 MVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKV---EPEDENENSE 819


>gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 907

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/916 (42%), Positives = 542/916 (59%), Gaps = 104/916 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+ +NK+Y KCA +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL++
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ KDTVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT  +I GR GI+ AY  GRG+I +R  + +E
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 481 LMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600

Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNL---------------------YVVFAT 652
            ++N++ L  GE++  I+P    PE   +                         +V   T
Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G I + ++  DE+++         ILL+T  G  +RF  S 
Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+GI+L +GD+V++ A +  A                           +
Sbjct: 721 VRPM-GRTAYGVKGITLEEGDEVVAGAAIPAAAEGEQAHTV------------------L 761

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T   N       ++E R Q                              R GKG+     
Sbjct: 762 TVTANGYGKRTELAEYRVQ-----------------------------TRGGKGLITIKT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV +I   +K+E+V
Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850

Query: 892 VSVERIRESEIVDEAE 907
           V V R+  +E   EAE
Sbjct: 851 VGVARV--AETTPEAE 864


>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 809

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/882 (40%), Positives = 543/882 (61%), Gaps = 86/882 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E GI  V I  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  + +  N  Y 
Sbjct: 8   ESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNLASNGPYR 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMGKYHPHG+++IY+A  R+AQD++ R  L++GQGNFG++DGD  AA RYTE
Sbjct: 68  KSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGAAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF PN+D + +EP +L AR+PN+LVNG  GIAVGMATN+  
Sbjct: 128 VRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMATNMAP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ E +DG +A IDN +I +  L +II+GPDFPTGA I+G  GIK AY TGRG I +R 
Sbjct: 188 HNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGTEGIKEAYETGRGKITVRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           V+ I+    +RE+IV+TE+PYQVNK+A++ KIAEL + K I  I+++ D S+R+G  +++
Sbjct: 248 VAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNRKGINIIV 307

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+V+LN+LY+ T +Q+ F +  +AL   +PE   L  I++ +V  + EVV RR
Sbjct: 308 ELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQVEVVTRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  RAH++ GL IA+ N+D +++I+R S + + A+ +  +             
Sbjct: 368 TKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEE------------ 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q++AIL++R+ RLTGL RD +  E   L  +IK   +IL 
Sbjct: 416 --------------FKLTEEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILE 461

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +   L+ +IK+ELL +K++    RRT I     D+E ED I +ED+V+T++  GY+KR+ 
Sbjct: 462 NNDVLMNLIKEELLEIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMS 521

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y+ Q+RGG+G S   MRD+DFV +LF+ STH  +LFF+SLG V+K K + +P  S  
Sbjct: 522 EGTYKPQKRGGRGVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRT 581

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG A+IN+L L++ ER+T+I+P  E +   N L V   T+ G ++R    D+  I +SG
Sbjct: 582 SRGTAIINLLDLDEDERVTSIIPVKEYDPDLNFLMV---TEKGLIKRTPFKDYKNIRKSG 638

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+KL+  D+++ V     + D++L TK G  +RF    +R  +GRNS+GV+ + L K 
Sbjct: 639 IIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVRK-SGRNSMGVKSMDLDKD 697

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+S  +V+                                                  
Sbjct: 698 DIVVSSDLVVD------------------------------------------------- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               ++++L +SE G+GK T    +R  NR GKG+    ++  N+ G + +   V   D 
Sbjct: 709 ----DKYLLVISENGYGKLTEIDKYRPQNRGGKGLLTYKIT--NKTGDVASAAVVEKEDD 762

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++++++ G +IR+   +I +  R T GV + +   D +VV+V
Sbjct: 763 VMIIANSGIIIRILTEDISVQGRNTSGVKLMNLT-DAKVVAV 803


>gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 841

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/889 (42%), Positives = 550/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDNYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI M +                                  L++D  V       
Sbjct: 693 LREGDEVIGMEV----------------------------------LEDDEKV------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
 gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
          Length = 859

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/887 (41%), Positives = 543/887 (61%), Gaps = 88/887 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    +  V I  EMQ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   + G+  +K 
Sbjct: 21  EPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQYEDGLTPDKA 80

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCA   G V+G+YHPHG+A++YDAL R+AQD+S+   L++G GNFGSVDGDPPAA RY
Sbjct: 81  YKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVDGDPPAAYRY 140

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +  +L D+ KDTV+F  NYD S +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 141 TEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTGIAVGMATNI 200

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE +D    +IDNPD  L+ LME I+GPDFPTGA+I+GR GI+ AYATGRG I +
Sbjct: 201 PPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIMGRAGIRAAYATGRGKITV 260

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ I +    R +I+VTE+PYQVNKA ++E IA++V++KRI  I+++ D SDR G  +
Sbjct: 261 RAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNIDDHSDRNGMHI 320

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKR AS  ++LNQLY YT +Q+ F V M+A+   +P+  TL  +L+ ++ F+EEV+ 
Sbjct: 321 EIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGEPKTLTLKEMLQEYIKFQEEVIT 380

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+RAH+L GL IA+ N+DE++ IIR S +  TA+  + +R          
Sbjct: 381 RRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTER---------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L +VQT AI+++RL +LTGL R  I +EL +L ++IK+  DI
Sbjct: 431 ----------------FGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R+  I+K EL+ ++++    R+T I+    +++ ED I +E+ V+T+++ GYVKR
Sbjct: 475 LAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVDIEDLIPQEECVLTLTNFGYVKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR QRRGG+G SG+  R+ED  T++F++++H  V+FF+S G VY+ K + +P GS
Sbjct: 535 QKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGS 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G  + N+L +   E++T+++  PE DE      Y+V  T++G ++R  LS +    
Sbjct: 595 RTSKGMNIANLLPITAEEKVTSMIRVPEFDEEK----YLVMVTRNGIIKRTLLSAYNSAR 650

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA++LD  DE+  V      N++++ TK G  +RF    +R   GR +   RG+  
Sbjct: 651 KGGLIAIELDEGDELAWVRVTDGSNELIVATKKGMAIRFHERDVR-LVGRTA---RGVK- 705

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                    AI L  D       C +       RL  G                      
Sbjct: 706 ---------AITLGEDD------CVV----GMARLREGGK-------------------- 726

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +LTVSE G+G+ +   D+RI  R GKG+    V K  ++ A+  V   + 
Sbjct: 727 ----------VLTVSETGYGRLSPISDYRIQYRGGKGLLNYHVDKYGDVAAIKVV---DL 773

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +D +IL+S  G +IR+  + IR  +R +KGV +    +D +VV++ R
Sbjct: 774 DDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKVVTLAR 820



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EI ++  +  +E  I +E C         +LT++  G+ KR     +R   R G+GI  +
Sbjct: 503 EIMAVSGEVDIEDLIPQEEC---------VLTLTNFGYVKRQKMDTYRTQRRGGRGI--S 551

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAK 887
            +S+  E  A   +F +N +D ++  +  G + R+   EI   SR +KG+ I        
Sbjct: 552 GMSRREEDVA-TEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMNIANLLPITA 610

Query: 888 DERVVSVERIRE 899
           +E+V S+ R+ E
Sbjct: 611 EEKVTSMIRVPE 622


>gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
 gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
          Length = 816

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/883 (41%), Positives = 547/883 (61%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +N Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGETIQTIINVQQDSS--DNSYLFFTTRLGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +                       +  GD                      
Sbjct: 693 DGDQVVGAGV-----------------------ITEGDE--------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 709 ---------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+
Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVT 800



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 15/202 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LG VKR  ++ +   R+   G   + ++DED + ++F+      V+  +  G+  +  
Sbjct: 615 TRLGVVKRTSVTEFANIRQ--NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +   S  A G   +N   L  G+++       E +       V+  T+ G  +R   
Sbjct: 673 ETAVRSMSRIATGVRGVN---LRDGDQVVGAGVITEGDE------VLVITEKGYGKRTLA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R GK    A   D    +  + T T E D+++ T  G  +R  ++ I    GR
Sbjct: 724 SEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTGVIIRTSVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
           +++GV+ + L +  Q+++   V
Sbjct: 783 STMGVKVMRLDQNAQIVTFTTV 804


>gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch
           sediment']
          Length = 841

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/899 (42%), Positives = 558/899 (62%), Gaps = 92/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G+   + Y K A
Sbjct: 16  VRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSAGRSYKKAA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YD + R+ QD+S+R  LI+GQGNFGSVDGD PAA RYTE RL
Sbjct: 76  RIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAAMRYTEVRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVD  PN+D + +EP +L A  PN+LVNG  GIAVGMATNIP HNL
Sbjct: 136 AKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + ++++PD   D LM ++ GPDFPTGA I GRTGI++AY TGRG I +R  + 
Sbjct: 196 SETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIYGRTGIRDAYLTGRGLIRMRAKAF 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +EK+ G RE I+V+E+PYQVNKA ++E+IAELVR+++I  IADLRDESDR+G R+VIELK
Sbjct: 256 VEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESDREGMRIVIELK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A  ILNQL+++T++QS F   M+AL   +P+   L   L  F+  R+ +V+RRT++
Sbjct: 316 KEQPAPPILNQLFKHTAMQSTFGAIMLALVEGQPKVLALKEALSHFIEHRKTIVIRRTRF 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L G  IA+ +LD V+ +IR S + + AR  LM++               
Sbjct: 376 DLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQ--------------- 420

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        +S++Q +AILELRL RLT L R  I++E +     I+    IL+S +
Sbjct: 421 -----------FGMSQIQAQAILELRLQRLTQLERQKIQDEYSETIAAIERYRAILASEA 469

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+ELL++K+     RRT I+E   ++E ED +  E+MV+ ++H GY+KR  L+ 
Sbjct: 470 LVCQIIKEELLAIKETYGDLRRTEILEETTEIELEDMLADEEMVIPITHGGYIKRSNLNA 529

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG +G+  ++ED+V  LF+ +TH+ +L F++ G V+  KV+ LP     A+G
Sbjct: 530 YRSQRRGGKGMTGMATKEEDYVEHLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKG 589

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL N L L  GE+ITT++P  + E    + Y++ AT+ G V++ +L+ +      G IA
Sbjct: 590 KALANFLQLGVGEQITTVIPIRQFEV---DRYLLMATRRGIVKKTELNAYGNPRAGGIIA 646

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE+++V     +++ILL T+ G  +RF    +R  AGR + GV+GISL  GD+V
Sbjct: 647 ITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFKEDEVRS-AGRAARGVKGISLEGGDEV 705

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   +V    A                                                 
Sbjct: 706 VGAEVVAQGAA------------------------------------------------- 716

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKG---IRATDVSKINEIGALVAVFPVNDNDQ 852
               +LTV+E+G+GKRT   ++R+ +R GKG   IRATD +     G  V V  V   DQ
Sbjct: 717 ----VLTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRN-----GPAVGVMLVQSGDQ 767

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEAESTE 910
           I+++S +G + R+ V+EI +  RAT+GV +      +RV +V R + + E V+EA+  +
Sbjct: 768 IMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSDDEGVEEADGPQ 826


>gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
 gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
          Length = 837

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/890 (40%), Positives = 552/890 (62%), Gaps = 90/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ K+TVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E++   V +ID     N +  +D +++I++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S R+G R+
Sbjct: 249 RAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++  +EEVV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKHYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN+A +RAH+L GL IA+ N+DEV+RIIR S N +TA+ ELM R          
Sbjct: 369 RRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMAR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ  AI+++RL  LTGL R+ +  E   L  +I E   I
Sbjct: 419 ----------------FDLTEVQASAIVDMRLRALTGLEREKLEAEYEELMKKIGELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L + ++    RRT I     D+  ED I RE++V+T++ +GY+KR
Sbjct: 463 LADRKLLLGVIKKEILVISEKYGDERRTSIGFDEFDISMEDLIPRENVVITMTKMGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+ + D+D++ +LFI +TH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MSMDTFKSQNRGGKGIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKGYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT ++P  E E      Y++ AT+ G V++  + D+  + +
Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIREYEDGQ---YLLMATEKGLVKKTPIKDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D+++ V+    E D++L TK G C+RF    +R   GR S+GVRG++L 
Sbjct: 640 TGLAAIVLREDDKLIEVKITDDEQDVILVTKYGMCIRFSEKDVRP-TGRVSMGVRGMNL- 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                                               GD +E+  ++        IS++  
Sbjct: 698 ------------------------------------GDHDEVIGMQ--------ISDQ-- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  +++L  SEKG GK T   +F   NR GKG++   +++  + G +V +  V+++
Sbjct: 712 ------GKYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITE--KTGDVVGMKAVDED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +I++++ +G +IR+  ++I +  R T GV + +  ++E+V S+ ++R++
Sbjct: 764 SEIMMINTEGIVIRMKCSDISVYGRITSGVKLINLPENEKVASIAKVRKA 813



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 28/176 (15%)

Query: 745 DADYDE---RICYMKHMSAQRRLISG-------------DTEEITSLKNDSSVEGNISEE 788
           +A+Y+E   +I  +K + A R+L+ G               E  TS+  D   E +IS E
Sbjct: 446 EAEYEELMKKIGELKAILADRKLLLGVIKKEILVISEKYGDERRTSIGFD---EFDISME 502

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +L  +E  ++T+++ G+ KR S   F+  NR GKGI+   +   + I  L   F   
Sbjct: 503 ---DLIPRENVVITMTKMGYIKRMSMDTFKSQNRGGKGIKGMQILDDDYIKEL---FITT 556

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESE 901
            +  I+  ++ G + R+   EI  ASR  +G  I +  +   DE++ ++  IRE E
Sbjct: 557 THHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQLMPDEKITAMIPIREYE 612


>gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 834

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 563/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEAIEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
 gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
          Length = 852

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/889 (42%), Positives = 547/889 (61%), Gaps = 95/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   SI DE+++S+L+YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G++ N+ Y K A
Sbjct: 9   IQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+GKYHPHG+AA+YD L R+AQD+S+R  L++GQGNFGSVDGDP AA RYTE RL
Sbjct: 69  TVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  DTV+F PN+D S +EP VL AR+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 129 TRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  VA+I++P++D + L   I+GPDFPTG +++G  GI+ A  TGRGS+ +R  +H
Sbjct: 189 GEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTRGIREAIRTGRGSVRVRAKAH 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G+R QIVVTE+PYQVNKA +L+KIAELV++++I DIADLRDESDR G R+VIELK
Sbjct: 249 TEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMRIVIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   V+LN L+++T +Q  F VN+VAL    P+  +    L+ ++A + EVV RRT++
Sbjct: 309 REAVPKVVLNNLFKHTQMQQSFGVNLVALVDGVPKTLSYKEALRHYIAHQFEVVTRRTRH 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +AR RAH+L GL IA++NLDEVV  IR S N ETARR L++R               
Sbjct: 369 ELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKR--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL+LRL RLT L R  +  +   L  +I+    +L+  S
Sbjct: 414 -----------FRLSERQAQAILDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADES 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           ++ GII++ELL +K      RRT I   EG  + E ED I  E+MV+++SH GY+K VP+
Sbjct: 463 KVYGIIREELLEIKAAYADERRTAITAQEG-AEFEVEDLIAEEEMVISISHEGYLKSVPI 521

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +R Q RGG G +G+ +++ D++  LFI +TH  +LFF++ G VY+ KV +LP     A
Sbjct: 522 GSFRKQGRGGVGVAGMELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAA 581

Query: 614 RGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQIN 669
           +G+ + N+L L  GERI  ++    F E E      Y++FAT+ G V++    D+   + 
Sbjct: 582 KGRHVANLLPLAPGERIAAVISTRDFDEAE------YLLFATRRGMVKKTPFRDYNTPLK 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+KL   DE+++V   + E++++  T+ G+ +RF    +R   GR + GV+GI+L
Sbjct: 636 NEGIIAIKLAGGDELIAVRHASDEDEVVFVTRDGKGLRFRQGDVRPM-GRATAGVKGITL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D ++SM +V    AD                                          
Sbjct: 695 KGDDALLSMDVVSDEAAD------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +  V+EKGFGKRT+  +FR   R G+G+ A  V+   E G +  V  V  
Sbjct: 713 ----------LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVN--GERGKIAGVQVVRP 760

Query: 850 N-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              ++++VS+ GT IR+  + +    RA +GV + +  + + V ++ ++
Sbjct: 761 GLHELVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKV 809


>gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
 gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
          Length = 825

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/894 (42%), Positives = 560/894 (62%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D     +DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  IL  ++  ++EV+VR
Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  +K +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+    D+  +++ Y+ F T+ G V+R  +S F  I +
Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDD--FHDKYLFFTTRQGVVKRTSVSAFGNIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T LG  VRF  SA+R   GR + GV+G++L 
Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI         AD+                                    I++ R 
Sbjct: 698 KNDYVIG--------ADH------------------------------------IADNRN 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LT++EKG+GK+T + ++    R GKGI+  +++  N  G L  +  VND+
Sbjct: 714 ---------VLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + I++++D G +IR  V +I    R+  GV +    ++ ++V+   ++ SE+++
Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVK-SEVIE 815


>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
 gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
          Length = 929

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/893 (41%), Positives = 534/893 (59%), Gaps = 97/893 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 80  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  LL
Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP  L AR+PN+LVNG  GIAVGMATNI  HN+ E ++   
Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAIEATC 259

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +ID+PD  +D LM+I+ GPDFPTGA+I+G  GI+ +Y TGRGSI +R  +H+E T   R
Sbjct: 260 YLIDHPDATVDELMQIMPGPDFPTGALIMGTEGIRQSYETGRGSITVRAKAHVESTKTGR 319

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPY VNK  + EKIA LV EKRI  I+D+RDES ++G R+VIELK+G    V+
Sbjct: 320 SRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+YTSLQ+ F  N +AL    P+  +L  +L+ ++  + +VV RRT++ L KA+ R
Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  IA+ ++DEV+ IIR S     A   L++R                       
Sbjct: 440 AHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 S  QT AILE++L RLTGL RD I  EL+ L   I    D+L+   ++LG+IK+
Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKE 533

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +    RRT+I     D++ ED I  EDMVVT++H GYVKR+P++ YRAQ+RGG
Sbjct: 534 EMREIARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGG 593

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFSS G VY+ KV  LP G+ QARG A++N+L 
Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLP 653

Query: 624 LNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
              GE+I +++    FPEDE      Y++FAT  G V++  ++ + +  R G IA+ + +
Sbjct: 654 FEDGEKIASVISCRAFPEDE------YLMFATASGMVKKTAMAAYDRSRRDGLIAINIKA 707

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +L V      + I++ T  G+ + F    +R   GR++ GVRGI++  G +V+ M I
Sbjct: 708 GDRLLGVRRVKPGDKIIMATTAGKAIMFCEDQVRA-TGRDTSGVRGITMKGGTEVLGMEI 766

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                               N S                 E F+
Sbjct: 767 T-----------------------------------NGSG----------------ELFV 775

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T  E G+GKRT   ++   NR G+G+    +++    GAL A+  V    ++ ++++  
Sbjct: 776 VT--EHGYGKRTPVAEYPEQNRGGQGVYTIQMTERK--GALAAMKVVGPQHELFIITENA 831

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR------ESEIVDEAE 907
           T+IRV   EI    RAT+GV + S  + +RV +V R+       E  + DE E
Sbjct: 832 TVIRVKTAEISQTGRATQGVKMMSVDEGDRVCAVARMTAGKDKPEDSVEDEGE 884


>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
 gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
          Length = 742

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/826 (43%), Positives = 518/826 (62%), Gaps = 90/826 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I + G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663
           P  S  A+G  +IN+L +++GE I  I+P   F +DE      ++ F TK G  +R  LS
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ G
Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + DQV+ M I                                        VE 
Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +++             +L V++ G+GKRT   ++R+ +R GKG++ 
Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 6/112 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  ++   +T++  G+ KR  +  ++  NR G+G++       N+   +  +   + +
Sbjct: 499 EDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGT---NDDDFVEHLLTTSTH 555

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRE 899
           D I+  ++KG + R    EI   SR  KG+ I +     K E + ++  IRE
Sbjct: 556 DHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIRE 607


>gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
          Length = 812

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/886 (41%), Positives = 548/886 (61%), Gaps = 86/886 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S EE    I  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q  +  
Sbjct: 2   SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A I G+V+GKYHPHG+ A+YDAL +MAQD+S+R  L++G GNFGS+DGD  AA
Sbjct: 62  DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R++K +  +L DL K+TVD  PNYD +  EP VL ARYPN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+IP HNLGEV+D  V +IDN D  L+ +++ I+GPDFPTGA I+G + +  AY TGRG 
Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIMGNSSMLQAYRTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V R  +  E+ SG + +IVVTEIPYQVNKA ++EKIAEL+++KRI  I  + DES+R+G
Sbjct: 242 VVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIEL+R  + D++LNQL++++ LQ +FS+ M+AL    P+  TL  +L+ ++  +EE
Sbjct: 302 MRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNNIPKVLTLEQMLRLYLKHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA+DR H++ GL  A+ ++DEV+ IIR S +    R  LM+R       
Sbjct: 362 VVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMER--LMER------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 SE+Q +AIL+++L RL GL ++ + +E   L  +I   
Sbjct: 413 -------------------FDFSEIQAKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYY 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +ILS RS LL IIK+E+L +K +    RRT  +    D++ +D I  +++ VT++HLGY
Sbjct: 454 QEILSDRSLLLSIIKEEILEIKAKYGNERRTTFLASYEDIDIKDMIPDDEVTVTLTHLGY 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV +  Y+ Q+RGGKG + +  RDEDFV  L + S H+ V+FF+++G +Y+   + +P
Sbjct: 514 IKRVGIDTYKTQKRGGKGIASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIP 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  ++NIL L  GE++ T++   E+++S    +VV  T+ G +++  L +F +
Sbjct: 574 ESSRTAKGTNIVNILPLEDGEKVNTMLSIREEQASSG--FVVMCTRKGIMKKTPLEEFQR 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            NR+G IA+ L   DE++ VE      +I+   + G+ + F  S IR   GR + GVR +
Sbjct: 632 SNRNGLIAISLKEDDELIGVELTDGNCNIICVARNGKAIMFDESDIRSM-GRTAQGVRAM 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+++SM I   AD + D                                      
Sbjct: 691 NLEEGDEIVSMMI---ADPEKD-------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SE+G+GKRT   ++ +  R GKG R   +++  + G LV    V
Sbjct: 710 ------------VLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITE--KTGRLVGGKVV 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +++D+I++V+  GTLIR+ V  I + SR T GV +  TA+++ + S
Sbjct: 756 SNDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMKTAENQDIAS 801


>gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
 gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
          Length = 899

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/898 (41%), Positives = 543/898 (60%), Gaps = 91/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP+VL ARYPN+LVNG  GIAVGMATNIP HN+
Sbjct: 129 SKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMATNIPPHNM 188

Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E++   V +IDN     +  ++ L+EI++GPDFPTGA+ILG  GI+ AY TGRG I +R
Sbjct: 189 REIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTRGIEEAYRTGRGKIRVR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K+I  I +LRDESDR+G R+ 
Sbjct: 249 AVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESDREGMRIC 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+R  +A+VILNQLY++T LQ  F V M+AL   +P+  TL+ +L  ++  +EEVV R
Sbjct: 309 IELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNQPKVLTLLEMLSYYLKHQEEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y LNKA++RAH+L GL  A+  +DEV+ IIR S N   A+  L++R           
Sbjct: 369 RITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIER----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                              ++Q +AI+++RL  LTGL R+ +++E   L   I E   IL
Sbjct: 418 ---------------FEFDDIQAQAIIDMRLRALTGLEREKLQDEFAELQRRIAEFEAIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +    LLG+IK E+  + D+    RRT I     D+  ED I  E+ V+ ++ LGY+KR+
Sbjct: 463 ADEKLLLGVIKGEIQVINDKFGDERRTSIGFDEFDISMEDLIPDENTVIAMTRLGYIKRM 522

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +++Q RGGKG  G+   DEDF+ DLF+ +TH  ++FF++ G VY+ K + +P  S 
Sbjct: 523 TIDNFKSQHRGGKGIKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAYEIPESSR 582

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG A++N+L L   ERIT I+   E     +N Y+  ATK G V++ K+ ++  I ++
Sbjct: 583 TARGTAIVNLLQLLPEERITAIIALKE---YKDNRYLFMATKDGIVKKTKIKEYQNIRKT 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+T   + DI+L TK G C+RF    +R   GR S+GV G++L  
Sbjct: 640 GLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDVR-NTGRASMGVIGMNLTN 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V++M I  H    Y                                           
Sbjct: 699 GDEVVAMQI--HTQGKY------------------------------------------- 713

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +LTVSE G GK T   +F    R GKG++   +++  + G +V    VN+  
Sbjct: 714 --------LLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITE--KTGNVVGAKAVNEEH 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS--TAKDERVVSVERIRESEIVDEAE 907
           ++++++++G +IR+ VN I I  R T GV + +    KD RV S+ +++ES +  E +
Sbjct: 764 EVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGKDIRVASLAKVKESSMNSEED 821


>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
 gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
 gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
          Length = 841

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/889 (39%), Positives = 550/889 (61%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ +   E+I T++   + +      + V  T++G +++ ++  +  I + G
Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    + ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
          Length = 836

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/889 (39%), Positives = 550/889 (61%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ +   E+I T++   + +      + V  T++G +++ ++  +  I + G
Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    + ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367]
 gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367]
 gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis]
          Length = 844

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/893 (40%), Positives = 547/893 (61%), Gaps = 85/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K + K A
Sbjct: 10  VTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITPDKPFRKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 70  RMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDT+DF+ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++ NPD  L  LME + GPDFPTG +++G+  I+ AY TG+G+I +R    
Sbjct: 190 TEVISALHILMKNPDASLADLMEALPGPDFPTGGIVMGKAAIRRAYETGKGTITLRAKVD 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++IV TEIPY VNKA ++E+IAEL R+KRI  I D+ DE+DR G R+VI+++
Sbjct: 250 IEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTGMRIVIDVR 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F +NM+A+    P+   L  IL+ ++ F+ EV+ RRT++
Sbjct: 310 RDASAEVILNNLYKMTLMQTSFGINMLAIVNGAPKVLGLKAILQYYLEFQLEVIRRRTEF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++DE++ IIR S   + A++EL+ R               
Sbjct: 370 DLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITR--------------- 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q++AIL++RL RLTGL R+ +  E   +   IK+  +IL+S+ 
Sbjct: 415 -----------FSLSDKQSQAILDMRLVRLTGLEREKVEKEYADVMANIKDYKEILASKE 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R   II +ELL ++++    RRT ++ G +L +EDED I  ED+VV+++H GY+KR+P S
Sbjct: 464 RQQAIIYEELLEIQNKFGDDRRTELMVGEVLSLEDEDLIAEEDVVVSLTHNGYIKRLPTS 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGGKG  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P     A+
Sbjct: 524 EFKAQNRGGKGVQGMGVHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAK 583

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N  E +  ++    +    +N  + F T  G V+R  + +F  I  +G  
Sbjct: 584 GIPVINLLGINNNEHVQAVINVA-NPGENDNRDLFFTTVQGTVKRTPVDEFANIRSNGLK 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    + ++++ T LG  V F  + +R   GR++ GVRGI L + D 
Sbjct: 643 AINLKEDDELIDVDIINADANMIIGTHLGYAVSFAATDVRSM-GRSATGVRGIRLREHDY 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  ++                                  LK DS V             
Sbjct: 702 VIGASV----------------------------------LKPDSKV------------- 714

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   +SEKG+GK+T++ ++ I  R GKGI+  +VS  N  G L  +  ++ ++ I+
Sbjct: 715 ------FVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKN--GPLAGLTTLDGDEDIM 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
           LV++KG +IR   +++    RAT GV +   A D  V ++ ++ +E E  DEA
Sbjct: 767 LVTNKGVMIRFSASDVSETGRATLGVHLIRLADDTAVATMAKVAKEDETADEA 819


>gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
          Length = 845

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/880 (40%), Positives = 538/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M             IC                  I  L+ +S        
Sbjct: 695 DDDGQDEVIGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162]
          Length = 851

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/905 (41%), Positives = 555/905 (61%), Gaps = 95/905 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   IHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF+PN+D + +EPVVL ARYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN      D  ++ L+EI++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+PY VNKA ++EKIAELVREK+I  I DL D S R+G R+
Sbjct: 249 RAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNM---VALNG-YKPERFTLIGILKAFVAFRE 366
            I+L++ A+A+V+LNQLY++T LQ  F V M   VA+NG  +P+  TL  +LK ++A +E
Sbjct: 309 CIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKYYLAHQE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTKY LNKA++RAH+L GL  A+ N+DEV+RIIR S + + A++ELM R      
Sbjct: 369 DVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDR------ 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ +AI+++RL  LTGL R+ +  E   L  +I++
Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRK 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+ R+ LL +I++E+L++ ++    RRT I     D+  ED I RE+ V+T++ LG
Sbjct: 463 LKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAYDISMEDMIPRENTVITMTKLG 522

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+ +  +R+Q RGG+G  G+   D+D++ +L + +TH  V+FF++ G VY+ K + +
Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEI 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     ARG A+IN+L L  GERIT ++P  + E      Y++ AT+ G V++  + D+ 
Sbjct: 583 PEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGH---YLMMATRKGLVKKTPIQDYA 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + + G  A+ L   DE++ V+    + D++L TK GQC+RF  + +R   GR S+GVRG
Sbjct: 640 NVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVR-STGRVSMGVRG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD+V++M +             Y+  +S                +N      +IS
Sbjct: 699 INLLDGDEVVAMQLNTQG--------YYLLVVS----------------ENGMGKRTSIS 734

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E  CQ                             NR GKG++   +++  + G ++    
Sbjct: 735 EFTCQ-----------------------------NRGGKGVKCYKITE--KTGNVIGAKA 763

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDE 905
           VN+ ++I++++ +G +IR+  ++I I  R T GV + + +    V S  ++RE  E   E
Sbjct: 764 VNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVREKDEDKAE 823

Query: 906 AESTE 910
            ES+E
Sbjct: 824 KESSE 828


>gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
 gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
          Length = 805

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/878 (43%), Positives = 528/878 (60%), Gaps = 84/878 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILF   Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDALAR+AQ W+LR  L++GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ K+TVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+IDNP I L+ +M  + GPDFPTG   L R GIK AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGGR-LSRKGIKEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+  G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 VEE-KGSRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LNQLY++T+LQS F+VN++A+   +P   +L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGANPQVVLNQLYKHTALQSSFTVNLLAIVEGEPRVLSLLDLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ ++DEV+ +IR S +   ARR LM+R               
Sbjct: 362 DLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL    
Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEG 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G +K+ELL VK++    RRT + E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLWGEVKRELLRVKEKYGDARRTLLTEFEESFNPEDLIEDEPMVITLTAQGFLKRLPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED  T +F+   H  +L FS+ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLMAGKTKEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             +  +L L + E +  ++     E      Y+VFAT+ G V+R  L ++  +   G IA
Sbjct: 576 VHVKTLLPLAEEEEVAALLAVRGLEGEG---YLVFATERGLVKRTALKEYANLGTGGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++L   D ++ V     E++ +L T  GQ +RFP+  +R   GR++ GV GI   K    
Sbjct: 633 IRLLEGDRLVGVALSDPEDEAILATAEGQAIRFPLEEVRA-TGRDTQGVVGIRFKK---- 687

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
                                    Q R++S     + ++K    V+             
Sbjct: 688 ------------------------PQDRVVS-----LVTVKPGEMVD------------- 705

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L+VS +G+GKRT   ++ +  R G G+    VS    +G L A+  V   + +++
Sbjct: 706 ----LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVSA--RVGRLAALLKVRGTEDLLV 759

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +S KG  +R PV EIR  SRAT GV I +  +++ + S
Sbjct: 760 LSKKGLTLRTPVAEIRQYSRATAGVKIMNLPEEDEIAS 797


>gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
 gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
          Length = 858

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/904 (40%), Positives = 550/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVIGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PTEE 825


>gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 858

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/904 (40%), Positives = 550/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M             IC                  I  L+ +S        
Sbjct: 695 DNDGQDEVIGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
 gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
          Length = 856

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/899 (39%), Positives = 550/899 (61%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DI+++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++IV+TEIPY VNKA +++ IA+L  +K+I  I++  DESDR+G R+V
Sbjct: 243 ARAEIE-TSSTHDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ FSVN VAL   +P    L  ++K FV  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLKDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +   I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +I  EL+ VK +    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 SNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
            D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++    + DE
Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSESMEDE 820


>gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
 gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
          Length = 826

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/886 (39%), Positives = 548/886 (61%), Gaps = 86/886 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+VI
Sbjct: 244 KAEIEEEKG-KNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+ +LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N++ +   E+I T++   + +      + V  T++G +++ ++  +  I + G
Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803


>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
 gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
          Length = 821

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/886 (39%), Positives = 548/886 (61%), Gaps = 86/886 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+VI
Sbjct: 244 KAEIEEEKG-KNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+ +LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N++ +   E+I T++   + +      + V  T++G +++ ++  +  I + G
Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L + 
Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +VL  +A                                              
Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803


>gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 955

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/900 (40%), Positives = 547/900 (60%), Gaps = 67/900 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WN ++ K AR+ 
Sbjct: 73  ISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSARVV 132

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A Y+ + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE RL+K 
Sbjct: 133 GDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLKKL 192

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  +L  L +D VDF PNYDG+ +EP VL   +P +L+NG  GIAVGMATNIP HNL E 
Sbjct: 193 SSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLRET 252

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           V+ C+ V+ NP+  +D +++++  PDFPTG ++ G + +  AY TGRG  +IR  +HIE+
Sbjct: 253 VNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAIIRAKTHIEE 312

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
             +G+RE I++ EIPYQVNK  +LEKIA+LV EK+I  ++ +RDESD+ G R VIELKRG
Sbjct: 313 WDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELKRG 372

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LN LY+ T LQ  F +N+VAL   +P++  +  IL  F++FR EVV R T +  
Sbjct: 373 ANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVVTRVTMFRR 432

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434
           +KAR R +++ G AIA+ANLD+ + IIR S N + A   L++R W A +  ++I      
Sbjct: 433 DKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRANLD 492

Query: 435 ------DDSSYTIG-SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                 +D   T+G +D   Y LS +Q + IL++RL  LTGL ++ I  E   L   I +
Sbjct: 493 KKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKELVDTIID 552

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R+  II   L +V  E    R+T+IV    +++ +D I   +MVVT++  G
Sbjct: 553 LTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTDTG 612

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K      YRAQ+RGG+G+    M++ D +  LF+ +TH  +L F++ G ++   VW +
Sbjct: 613 YIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLHWLNVWDV 672

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  ++G+ ++N+L L   E++T ++P   DE    +LY+  AT  G V++  + DF 
Sbjct: 673 PEGSSSSKGRPIVNMLELTDDEKVTAVLPIS-DEDYAKDLYIFMATADGTVKKTPIGDFK 731

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+G  A+ L   D ++       ++D++L +  G+ VRF    +R   GR + GVRG
Sbjct: 732 NQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-GRAATGVRG 790

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G +VISM                         L+ GD E++T             
Sbjct: 791 MRLDEGQKVISM-------------------------LVCGDDEDVT------------- 812

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +LT +E G+GKR+   ++    R  KGI +   ++ N  G +V+   
Sbjct: 813 -------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN--GKVVSALL 857

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V +ND+IIL++  G L+R  VNEIR+  R T+GV + S  +  ++V +ER+ E++  D A
Sbjct: 858 VKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVTENDDGDNA 917


>gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 563/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
 gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
          Length = 809

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 561/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIIDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LD+V+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPDRVITIIKEEMDEIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQRRGG+G  G  + D+DFV +L   +TH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+    ++ + N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN--YLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     ++DI++ TK G  VRF  S++R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKESDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  +                                   + ND            
Sbjct: 693 EGDEVVGAS----------------------------------RITND------------ 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKGI+  +++K N  G L  +  VN +
Sbjct: 707 -------QEVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKN--GKLAGLVTVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I++++D G +IR  V +I    RAT GV I    ++ +++++  ++  E
Sbjct: 758 EDIMVITDTGVMIRTNVADISQTGRATLGVKIMRLDENAKIMTLALVQAEE 808



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    N +D +  +++K
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQRRGGRGVQGTGVNDDDFVRELVST---NTHDHVYFMTNK 560

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           G + R+   EI    R  KG+ I +  K +   +V+ I   +  DE E+
Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN 609


>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
          Length = 845

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/880 (40%), Positives = 537/880 (61%), Gaps = 85/880 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNFLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M             IC                  I  L+ +S        
Sbjct: 695 DDDGQDEVIGM-------------IC------------------IKDLETES-------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801


>gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/898 (41%), Positives = 555/898 (61%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G  +N+ Y K A
Sbjct: 1   MSQITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +   L DL K TVDFR NYD S QEP VL  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 121 SKLSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++G V ++DNP+ +++ LM+ I+GPDFPTGA+  G  G++ AY TGRGSI IRGV +
Sbjct: 181 GELINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGKGLREAYLTGRGSIKIRGVVN 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R+ IV+TEIPY +NK++M+EKIA+LV E +I  ++DLRDESDR+G RVV++LK
Sbjct: 241 IEEKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA AD+I+N LY++T L+  F +NM+A+N  +P+   L  IL AF+  R EV++RRT++
Sbjct: 301 KGAIADIIINSLYKFTQLEQSFGINMMAVNANRPQLMNLKQILAAFLEHRREVIIRRTRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+K   RAH+L GL IA+ N+DEVV+IIR S N + AR  LM R               
Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDR--------------- 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+VQ +AIL++RL RLT L  + +  E   +  +I+    IL++  
Sbjct: 406 -----------FELSKVQAQAILDMRLQRLTNLEHEKLLEEYAEILKKIEYFKSILANEE 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G+I+ EL+ +KD   T R+T +++    D++ ED I  +D V+T+S  GY+KR PLS
Sbjct: 455 VLKGVIRDELVEIKDNYATERKTVLMDHNPDDIDIEDLIPDDDAVITLSRRGYIKRTPLS 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q+RGGKG +GV  +D DF+      S H  +L F+S G ++K KV ++P  S  AR
Sbjct: 515 NYQKQKRGGKGIAGVQTKDGDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L + E I T M   E E     L+V   TK G ++R+ ++ +    +SG  
Sbjct: 575 GAHIANLLPLEKDETIATAMTMREFEEECFFLFV---TKSGMIKRSSIALYRNCRQSGIR 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D +++V+  + +++ +L T+ G  +RF     R   GR + GV+GI+L  GD+
Sbjct: 632 AVALKEGDALITVKEVSADSEAVLVTRNGTSIRFSCQDARAM-GRVASGVKGIALRPGDE 690

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S                          +++GD                  EER Q   
Sbjct: 691 VVS-------------------------GVVTGD------------------EERVQ--- 704

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LT+SE G+GKRT     RI  R GKGI +  V+   + G ++    V+  D+++
Sbjct: 705 -----LLTISEGGYGKRTDIDQHRIQTRGGKGIISMRVT--TKTGKVLGSIMVSPEDEVV 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES--EIVDEAESTE 910
           L++    +IR+ V ++ +  RAT+GV +      + VV  + ++++  EI  E E  E
Sbjct: 758 LLTSGNKIIRMGVKDVSLVGRATQGVRLVRMDDGDHVVGFDLVQDANEEITSEPEGEE 815


>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 838

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/903 (41%), Positives = 540/903 (59%), Gaps = 91/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K A
Sbjct: 16  VIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGDPPAA RYTE R+
Sbjct: 76  RIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDPPAAMRYTEVRM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF PNYD S +EP VL ++ P +L+NG  GIAVGMATNIP HNL
Sbjct: 136 GKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSAGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +ID+PD  ++ LM  I+GPDFPTGA ILG +GI+ AY TGRG + +R  +H
Sbjct: 196 GEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGVSGIRQAYTTGRGVVKVRAKAH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E    ++ +IVVTEIPYQVNKA ++E IA LV++K +  I DLRDESDR+G R+VIEL+
Sbjct: 256 VEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLRDESDRKGMRIVIELR 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
                +++LN+LY++T +Q  F +  +AL    P    L  IL  ++  ++EV+ R+T+Y
Sbjct: 316 SDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRILNLKEILVYYLEHQKEVITRKTRY 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA++RAH+L GL IA+ +LDEV+  IR S   E AR  L+ +               
Sbjct: 376 ELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLISKFG------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RLTGL R  I +E   +   I     +L+   
Sbjct: 423 -------------LSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEH 469

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +++GI K + L VK     PRRT IV    +++ ED I  ED+V+T+SH  Y+KR  L+ 
Sbjct: 470 KIMGIAKDDFLDVKKRFGDPRRTSIVPDAGEIDAEDLIAEEDIVITISHQSYIKRQALTN 529

Query: 556 YRAQRRGGKG---RSGVVMRDE-----DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +R Q RGG+G    SG +++++     DF   L + STH ++LFF++ G VY++K + +P
Sbjct: 530 FRNQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIP 589

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               QA+G  + N+L L + E+IT I+      S   N ++  AT  G +++  +S+F  
Sbjct: 590 EAGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEFKT 649

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+G IA+ LD  ++++ V+  +  +DILL T+ G  +RF  S +R   GR + GVRGI
Sbjct: 650 ARRAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRPM-GRTAHGVRGI 708

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++SM                                         S EG+  E
Sbjct: 709 TLRHHDVLVSM----------------------------------------DSCEGDSGE 728

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTV+E G GKRT   ++R+  R GKGI    V+  N+ G +V    V
Sbjct: 729 ------------VLTVTEGGLGKRTDISEYRLQTRGGKGIINLKVT--NKTGDIVGSKLV 774

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ND+  I+L+S  G +IR+  ++I   SR  +GV +    K ++V ++  +    + DE +
Sbjct: 775 NDHHDILLISAAGIIIRMKASDISSYSRNAQGVKMMDLEKGDKVAALAIV--DTVSDEEK 832

Query: 908 STE 910
            TE
Sbjct: 833 ETE 835


>gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
 gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
          Length = 828

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/887 (41%), Positives = 538/887 (60%), Gaps = 85/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K A
Sbjct: 6   ILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GK+HPHG++A+YD+L R+ QD+SLR  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL
Sbjct: 126 KPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG +AVI+NP+I++  +M+ +  PDFPTG +I G  G++ AY TGRG +VIR  + 
Sbjct: 186 REVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAL 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V M+AL    P    L  ++  +V  R E+V+RRT+
Sbjct: 306 KRDAVAKVVLNNLYKHTPMQETFGVIMLALVDGVPRVLNLKEMMHYYVKHRNEIVLRRTQ 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  LM+R              
Sbjct: 366 FDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q++AILE+RL RLTG+ R  I  E     + I     IL+S 
Sbjct: 412 ------------FGLSEIQSKAILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSILASP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 QKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   + +DF+  +FI STH  +LFF++ G  Y  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVTGAQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L NI+ L   E+I   +     E      Y+V AT +G V++  L DF    R+G  
Sbjct: 580 GRSLANIMELRPTEQIKAYINIRNFEDPG---YIVMATTNGIVKKTPLDDFSNPRRTGIA 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ ++  DE+L       ++ I+L       VRFP + IR   GR ++GV+GI+L +G++
Sbjct: 637 AITIEEGDELLDARLTDGDHQIILAKSSAYAVRFPENEIRSM-GRTAMGVKGITLDEGEK 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ISM                                 +T+ + D++              
Sbjct: 696 CISM---------------------------------VTTKRTDTA-------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ GFGKR+   D+R++ R  +G+    +    +IGALV +  VND+D +I
Sbjct: 709 -----LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKAHEKIGALVGLIDVNDDDDLI 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++  G + R  V+++R+  R T GV +      +++ ++ R+ +S+
Sbjct: 762 IITTNGIVNRQHVSDVRMTGRNTSGVRLIRLMAGDKISALARVPKSD 808


>gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
 gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
          Length = 855

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/912 (40%), Positives = 556/912 (60%), Gaps = 99/912 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K +
Sbjct: 3   EQENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+S R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  KKSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  L+ D+GK+T+D++PN+DG  +EPVVL AR+PN LVNG  GIAVGMATN+P
Sbjct: 123 EARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A+  NPDI +  LM+ I GPDFPT   ILGR+GI+ AY TGRGSI +R
Sbjct: 183 PHNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSITMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     RE+I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+V
Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R A+A VILN LY+ T +Q+ F VNM+AL G +P+   +   +  ++  ++EVV R
Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGRPKTLNIKQAIYYYIEHQKEVVRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL +A+ +LDEV+ IIR +   + AR +L+ R           
Sbjct: 363 RTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIARFG--------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS  QT+AIL++RL RLTGL R+ I  E   +   I+E   IL
Sbjct: 414 -----------------LSTEQTQAILDMRLQRLTGLEREKIEGEYREVKALIEELRAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                LL II+ EL+ +K+     RRT I   ++++EDED I   DM++T++  GY+K +
Sbjct: 457 GDEELLLDIIRNELIEIKERYGDARRTVIRTDIVELEDEDLIPVRDMMITLTSEGYIKSI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   YR QRRGG+G+ G+   DEDFV  L   STH ++LFF++ G V++ K + +P  S 
Sbjct: 517 PSDSYRTQRRGGRGKQGMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSR 576

Query: 612 QARGKALINILSLNQGERITTIMPF--------------PEDESSW---NNLYVVFATKH 654
            A+G  +IN+L +++GE++ T++P                +DES       L +VF TK 
Sbjct: 577 TAKGMPIINLLQIDKGEKVETMIPVDFNSYLANQTVAEETQDESEEVADEQLSLVFITKE 636

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G ++R+ LS + +IN++G  A+ L+  DE+++V     ++++L+ T+ G  +RFP+    
Sbjct: 637 GLIKRSPLSAYARINKNGLRAISLNETDELVTVRLAKSDDEMLIVTRQGMSIRFPLEGEV 696

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVR             AI L  + D                        + S
Sbjct: 697 RSMGRTARGVR-------------AIRLKKEDDL-----------------------VVS 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           +                E+    Q +L ++EKG+GKRT+   FR   R G GI      +
Sbjct: 721 M----------------EIVRTTQDVLIITEKGYGKRTAMEQFRTQGRGGSGIIGIKTDR 764

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G +V +  V+++D I+L+++ G  IR+    I    R+T+GV + +  + +R+ ++
Sbjct: 765 ----GTVVGMRVVDEDDDIMLMTELGVAIRIDSQTISQMGRSTRGVKVMNIEEGDRLATI 820

Query: 895 ERIRESEIVDEA 906
            ++++ E+ +E+
Sbjct: 821 AKLKKDELEEES 832


>gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 562/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1]
          Length = 852

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/875 (41%), Positives = 537/875 (61%), Gaps = 91/875 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCARI 
Sbjct: 13  VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+ +IY+AL ++AQ+W+ R  L++G GNFGSVDGD  AA RYTE RL K 
Sbjct: 73  GDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL E 
Sbjct: 133 SMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192

Query: 199 VDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           ++  + +IDN      + ++D +M+I++GPDFPTGA ILGR GI +AY TGRG I +R +
Sbjct: 193 INAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRAI 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE  +  + +IVVTE+PY VNK+ +++ + +LV+ KRI  I D+RDES R+G RVVIE
Sbjct: 253 TEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVIE 312

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  +A+VILNQL+++T LQ  F   M+AL    P+   +  +L  ++  +E+VV RRT
Sbjct: 313 LRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNIKDMLTYYLKHQEDVVTRRT 372

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KY LNKA +RAH+L G  IA+ N+DEV+ IIR S N   A+ +L++R             
Sbjct: 373 KYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------- 419

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AI+++RL  LTGL R+ I NE N L  +I E  +IL+ 
Sbjct: 420 -------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELIAKIAEYKEILAD 466

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++LLG+IK EL ++ D+    RRT I     D+ DE+ I RE++V++++ LGY+KR+P 
Sbjct: 467 ENKLLGVIKTELAAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMPK 526

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++ Q RGGKG  G+   D D + ++F+ +TH  ++FF+++G VY+ K + +P     A
Sbjct: 527 DTFKVQNRGGKGIKGMNTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNA 586

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG A++N+L L  GE++T I+P     + ++  Y++ ATK+G V++ K+  F  I ++G 
Sbjct: 587 RGVAIVNLLQLLPGEKVTAIIPI----AGFDKKYLMMATKNGIVKKTKIEAFENIRKTGL 642

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L+  DE++ V+  + END+ L T  G C+RF    +R   GR S+GVRGI   KGD
Sbjct: 643 AAITLNEGDELIEVKATSGENDVFLVTAKGMCIRFNEECVR-DTGRTSMGVRGIRCDKGD 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI+M +    D   DE                                           
Sbjct: 702 EVIAMQL----DVQGDE------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+ KG GKRT   +F    R GKG++   +++  + G +V+   V ++  I
Sbjct: 715 ------MLFVTTKGMGKRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHDI 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           ++++++G +IR+  ++I +  R T GV + +  KD
Sbjct: 767 MMMTNEGIMIRMHCSDITVIGRITSGVKLMNIGKD 801


>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 840

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/892 (42%), Positives = 539/892 (60%), Gaps = 80/892 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +EMQ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+  ++ Y KCA
Sbjct: 4   IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL R+AQD+S R LLI+G GNFGSVD DPPAA RYTECRL
Sbjct: 64  RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  LL DL  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H 
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG  A++ NP++ +  LM  I GPDFPTG  ILG++GI+ AY TGRGSI +RGV+
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DRE IV+TE+PYQV KAA++EKIAELV +KRI  I+D+RDESDR G R 
Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN L++ T LQ+ F  NM+AL   +P    L   L+ F+ FR EV+ 
Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L+G+ +A+ANL+ V+ +IR + +  +AR EL+ R          
Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTG+    I  E   L  +I +  D+
Sbjct: 414 ----------------FELSEAQAEAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+  II+ ELL+ K  L+ PRRT I +   +++D D I  ++MVV V+  GY+KR
Sbjct: 458 LERRERIDQIIRDELLTAKQRLNDPRRTIIEKAEGEIDDADLIANQEMVVLVTEQGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  +  QRR  +G+SG  MR++D V        H +VLFF++ G VY  + +++P GS
Sbjct: 518 LPVDTFDRQRRATRGKSGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L +   E++T+I+P  E  S   + ++V  T+ G +++  L+ F  +  
Sbjct: 578 RTAKGTPVVQLLPIPIEEKVTSIVPVQEFAS---DEFLVMLTRTGFIKKTALAAFANLRA 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  DE+  V     E+DIL+ ++ G  +RF     ++   GR + GV+ + L
Sbjct: 635 NGLIAIGLEEGDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARGVKSMEL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD+++SM I                 +S ++R                        ER
Sbjct: 695 RKGDELVSMDI-----------------LSCEQR------------------------ER 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALVAVFPVN 848
            +       ++L V+  GFGKR    +FR  NR G G+ AT   K  + G  L A+  V+
Sbjct: 714 AEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIAT---KFRDQGDELAALRVVS 770

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             D++++V+ +G +IR    EI   SRA  GV +    +D+ +V V  + ES
Sbjct: 771 CEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVVPES 822


>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 812

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/881 (41%), Positives = 548/881 (62%), Gaps = 96/881 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE+K+G   
Sbjct: 249 NGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY++T LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYG------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++L+  S++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQR
Sbjct: 463 MKKELLEIKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGRGVSALNTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582

Query: 621 ILSLNQGERIT---TIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE+++    I  F PE E       +VF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVSDTIVIKEFLPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K+   D+I+ V   E  T+E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KIKEDDDIIFVGLIEDVTKE-EILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + ++  G +IR  ++EI    RAT+GV I   A +E+V ++
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800


>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
 gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
          Length = 861

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/891 (39%), Positives = 553/891 (62%), Gaps = 86/891 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N++ +   E+I T++   + +      + V  T++G +++ ++S +  I + G
Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K 
Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKT 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +V+                                                  
Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I+
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 856

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/891 (39%), Positives = 553/891 (62%), Gaps = 86/891 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N++ +   E+I T++   + +      + V  T++G +++ ++S +  I + G
Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K 
Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKT 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +V+                                                  
Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I+
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110]
 gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 841

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/888 (41%), Positives = 547/888 (61%), Gaps = 87/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  ++I DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  + Y
Sbjct: 2   QREKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD++ RM Q++SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + +  +L DL K+T+DF PN+D S +EP+VL A +PN+L+NG  GIAVGMATNIP
Sbjct: 122 EVRMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+NP+I ++ LM  I+ PDFPT  +I G  G+++AY TGRG IV+R
Sbjct: 182 PHNLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIYGYNGVRDAYLTGRGKIVLR 241

Query: 252 GVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E T  + RE I++TE+PYQVNKA ++EKIA LV++K++  IADLRDESDR G RV
Sbjct: 242 AKVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A   V++N+L++ T LQ  F V M+AL G  P   TL   ++ +V  R EV++
Sbjct: 302 VIELKKDAVTQVVINRLFKLTQLQETFGVIMLALVGGIPRVLTLKETIQYYVNHRHEVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL I + NLDE++  IR SP+ ETAR  LM            
Sbjct: 362 RRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLM------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LS++Q +AIL++RL RLTGL R  I +E   L   I+    I
Sbjct: 410 --------------ATFSLSDLQAKAILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++    + +IK+ELL +K      RRT+IV    D   ED I  ED+V+T++H GY+KR
Sbjct: 456 LANEKLQMQLIKKELLQIKKTYGDERRTQIVYETEDFSVEDMIAEEDVVITITHQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G SGV  R++DF+  +FI STH  +LFF+S G  Y  KV  +P   
Sbjct: 516 FPVSGYRRQGRGGRGISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+++ N++    GE+I   +   E   +    ++V ATK+G +++  LS++    R
Sbjct: 576 RTARGRSITNLIEFATGEKIKASINVKEFNDTQ---FIVMATKNGTIKKTPLSEYSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ +   DE++        + I+L    G  VRFP   +R   GRNS+GV+G S++
Sbjct: 633 SGIIAINITDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPM-GRNSIGVKGASIS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + +ISM                                 +++ +ND++          
Sbjct: 692 GDEAIISM---------------------------------VSTPRNDAT---------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVND 849
                    +L +++ G+GKR++  D+R++ R   G+      K NE +G LV +  VND
Sbjct: 709 ---------LLAITDNGYGKRSAIEDYRMTKRGANGVITL---KANEKVGKLVDMLEVND 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + II++++KG + R  + +IR+  R T GV +    +D+ V +V R+
Sbjct: 757 GEDIIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVARV 804


>gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 833

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/873 (42%), Positives = 530/873 (60%), Gaps = 87/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++S+  Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q G   N K+VK ARI G+VMGK
Sbjct: 33  MEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQNGNRSNAKFVKSARIIGDVMGK 92

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYD++ R+AQDW++R  L++GQGNFGS+ GDPPAA RYTE RL K A  LL 
Sbjct: 93  YHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGDPPAAHRYTEARLDKPAEELLA 152

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDFR N+DGS QEP+VL A+ PN+L+NG  GIAVGMAT+IPTHNLGE+VD  V 
Sbjct: 153 DIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIAVGMATSIPTHNLGELVDATVE 212

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP+  +D L++ ++GPDFPTGA++ G   +  AY TGRGS+ IR V++IE+T   R 
Sbjct: 213 LIDNPEATVDDLLKHVKGPDFPTGAIVYGGAPMWQAYQTGRGSVTIRAVANIEETKRGRH 272

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTE+PY VNKA ++EKIAELV+EK+I  I+DLRDES R   RVVIELK+ A    +L
Sbjct: 273 RIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDESARGNVRVVIELKKDAYPKKVL 332

Query: 325 NQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           NQLY+ T+LQ+ F  NM+AL +G +P    L  IL  F+  R  VV RRT++ L KA  R
Sbjct: 333 NQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFIKHRRSVVRRRTEFELKKAEAR 392

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  IA+ ++DEV++ IR S   E A + L+ R                       
Sbjct: 393 AHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIAR----------------------- 429

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                LSE+Q +AIL ++L RLTGL R+ I NEL  L   I++   IL+    +L IIK 
Sbjct: 430 ---FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQEILNIIKN 486

Query: 504 ELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           EL+ +K++    RR++++   L    DE+ I  ED VV ++   Y+KR   S YR Q RG
Sbjct: 487 ELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTLASDYRKQNRG 546

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG+ G+  ++ D +  +    TH  +LFF++ G V++ K + +P  S QA+G A +N+L
Sbjct: 547 GKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAAVNLL 606

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L   E+IT I+ F +D  + ++ Y+  AT  G +++  + D+  I  +G IA+KLD  D
Sbjct: 607 QLQPEEKITAIIKFEKD--AKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGD 664

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+  ++  +  +DIL++T  GQ +RF     R   GR + GVRG+ L   D V+ M I  
Sbjct: 665 ELRWIKRSSGNDDILISTSAGQAIRFNEKDARSM-GRAARGVRGVRLRPNDSVVGMDIA- 722

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                             ND                  ++ +L 
Sbjct: 723 ----------------------------------ND------------------DRTLLV 730

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGT 861
           +SE G+GK T   +F    R G GI+A  V+   + G +++V  +  +D + +LVS +G 
Sbjct: 731 ISENGYGKATKISNFPSHKRGGVGIKAAVVTA--KTGPIISVKTIQQDDIEALLVSTQGQ 788

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            IRV + +I +  R T+GV I  T+ D+ V SV
Sbjct: 789 TIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASV 821


>gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 850

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/894 (41%), Positives = 557/894 (62%), Gaps = 86/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV  +K Y K A
Sbjct: 20  ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 80  RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++DNPD     LME++ GPDFPTG V++G++GI+ AY TGRGSI++R    
Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYETGRGSIILRAKVE 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR+G RVVI+++
Sbjct: 260 IEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDVR 319

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ FS NM+A+    P   +L  IL+ ++  + EV+ RRTKY
Sbjct: 320 RDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLEHQVEVITRRTKY 379

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE+++IIR S   E A+ +L+                 
Sbjct: 380 ELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I  E N L  +I++   ILSSR 
Sbjct: 424 ----------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRD 473

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +ELL ++ +    RRT ++ G +L +EDED I  ED++V+++H GY+KR+P +
Sbjct: 474 RVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTT 533

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF+  G VY+ K + +P     A+
Sbjct: 534 EFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAK 593

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L++N GE+I  ++   + ++      ++F T +G V+R  +SDF  I  +G I
Sbjct: 594 GIPIVNLLNINSGEKIEAVINVSDRKNDVQK-DLLFVTLYGTVKRTPVSDFANIRSNGLI 652

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++++     Q  ++++ T LG  + F  S +R   GR++ GVRGI L + D 
Sbjct: 653 AIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSATGVRGIRLRENDY 711

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+  A VL+ D++                                               
Sbjct: 712 VVG-ADVLNPDSE----------------------------------------------- 723

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +  +SEKGFGKRT + D+ I  R GKG++  ++++ N  G L  +  V+ N+ I+
Sbjct: 724 -----VFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLSGLTTVSGNEDIM 776

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           L++DKG +IR  + ++    R+T GV +    +D +V ++ ++ + E  DEA S
Sbjct: 777 LITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQE--DEASS 828


>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
          Length = 849

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/900 (41%), Positives = 542/900 (60%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V + + M+  Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   IHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 69  RIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  ++ D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E +DG + +ID     N +  ++ LMEII+GPDFPTGA+ILG+ GI  AY TGRG + +
Sbjct: 189 RETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMILGKNGINQAYRTGRGKLKV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     R +IV TE+PY VNKA ++EKIAELV++KRI  I+DLRDES R+G RV
Sbjct: 249 RAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDESSREGLRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A+ +V+LNQLY++T LQ  + V M+AL   +P    L  +L+ ++  +EEVV 
Sbjct: 309 VIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQPMILNLKQMLELYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA +RAH+L GL IA+ ++DEV+ IIR S N   A+  LM+           
Sbjct: 369 RRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLME----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  L+EVQ +AI+++RL  LTGL R+ I NE N L   I E   I
Sbjct: 418 ---------------TFGLTEVQAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LLG+I++E+  ++D+    R+T +     ++  ED I RE+ V+ ++ LGY+KR
Sbjct: 463 LADEKLLLGVIREEIKLIRDKYGDDRKTSLGVDDDEITVEDLIKRENTVIAMTQLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGG+G  G+   DED +T+L + +TH  +LFF++ G V++ K + +P  S
Sbjct: 523 MTMDNFRSQNRGGRGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG ALIN+L L  GE++T  +P    E   N+ Y+  ATK+G V++  + ++I + +
Sbjct: 583 RIARGTALINLLQLEPGEKVTATIPL---EKYENDKYLFMATKNGMVKKTSIMEYINVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G +A+ L   DE++ V+   + + I L ++ G  + F    +R   GR S+GV G+ L 
Sbjct: 640 TGLLAIGLREDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRA-TGRTSMGVIGMDLD 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D ++ M +    +A                                            
Sbjct: 699 ADDLIVGMQVSSQGEA-------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG GKRT   +F + NR GKG++   ++  ++ G +V V  VN  
Sbjct: 715 ---------VLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYKIT--DKTGLVVGVKCVNAE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D++++++  G +IR+PV  I I  R T GV +    +   V S+ +IRE    DE  S E
Sbjct: 764 DELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVVASIAKIREDMKDDEETSDE 823


>gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 834

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/881 (41%), Positives = 543/881 (61%), Gaps = 88/881 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K ARI GE
Sbjct: 9   IEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL++G GNFGS+DGD  AA RYTE R+ K ++
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEARMAKISN 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+DD+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE++D
Sbjct: 129 ELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGELID 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDNP++    LME I+GPDFPTG +I G+ GI++AY TGRG + +RG   IE+  
Sbjct: 189 GILALIDNPELTPLDLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGKVEIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I++ EIPYQ+NK+ ++E+IA+LV++KR+  I DLRDESDR G RVVIE+K+G   
Sbjct: 249 NGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           ++ILN+LY+YT LQ+ F + M+AL    P    L  IL  ++  R EVV RRTK+ L+KA
Sbjct: 309 ELILNKLYKYTELQNTFGIIMLALVNNAPRVLNLKEILHEYIKHRFEVVTRRTKFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ IIR S +   AR  L+++                    
Sbjct: 369 EKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    S+VQ RAIL+++L RLTGL R  I  E   +   I E  +ILS  S++  I
Sbjct: 411 --------FSDVQARAILDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSHDSKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+ELL +K++ +  RRT I    +++  ED I  E++++T+++ GYVKR+ +S Y+AQ+
Sbjct: 463 IKEELLYLKEKYNDNRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQK 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG +     ++DFV  +   S   +++ F++ G V+  KV+ +P  S Q+RGK + N
Sbjct: 523 RGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSN 582

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           I+   + E+I  ++    D S  N   VVF TK G +++  L +F  IN SG  A+KL  
Sbjct: 583 IIRTREDEKIRAVIK-TRDFSKENE--VVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKE 639

Query: 681 RDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D+I+ V   E   QE  + + TK G  +RF    +R   GR+++GV+ I+L  GD ++S
Sbjct: 640 EDDIIYVGLIEKIDQEQ-VFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRPGDSIVS 697

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++                                                    K +E
Sbjct: 698 ALLI----------------------------------------------------KDEE 705

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILTV+E G+GKRT   ++ +  RSGKG+   ++    + GA+V+V PV + ++++ ++
Sbjct: 706 GSILTVTENGYGKRTRIDEYPLQARSGKGV--INIRCNAKTGAVVSVLPVTEGEELMAIT 763

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             G +IR+P++ I +  RAT+GV+I      E+VVS+ R++
Sbjct: 764 SSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVK 804



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 91/179 (50%), Gaps = 26/179 (14%)

Query: 745 DADYDERICYMKHMSAQRRLISGDT-------EEITSLK---NDSS---VEGNISEERCQ 791
           DA+Y+E     K+++  R ++S D+       EE+  LK   ND+    +E    E   +
Sbjct: 436 DAEYEE---IEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDNRRTLIENERMEILPE 492

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E  ILT++ KG+ KR     ++   R GKG+ + +     E   + ++   ++ D
Sbjct: 493 DLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQNTI---EDDFVESIESASNLD 549

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIR----ESEIV 903
            +++ +++G +  + V EI   S+ ++G +   I  T +DE++ +V + R    E+E+V
Sbjct: 550 TLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRTREDEKIRAVIKTRDFSKENEVV 608


>gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
 gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
          Length = 860

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/892 (41%), Positives = 548/892 (61%), Gaps = 90/892 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT   +T E++  +L Y+++VI+ RA+PD+RDGLKPV RRIL+ M +M +  +K Y K A
Sbjct: 19  ITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRILYSMHEMNIGPDKAYRKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ W++R +L++G GNFGS+DGD PAA RYTE R+
Sbjct: 79  RIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNFGSMDGDDPAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L DL KDTVD   NYDG  +EP VL +RYPN++VNG  GIAVGMATN+  HNL
Sbjct: 139 SKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSSGIAVGMATNVAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +DG  AV+DNP+I    LM  ++GPDFPTGA ILGR+GI+ A+ TGRGS+++R  + 
Sbjct: 199 GETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYILGRSGIRQAFETGRGSVIMRAKTK 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    + +IVV E+PY VNKA+++E+IA LVR+K I  I DLRDES+  G RVVIEL+
Sbjct: 259 IEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGITDLRDESNMDGIRVVIELR 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +    DV+LNQLYR T LQS F VN V L    P + ++I +LK ++AF++EV+VRRT++
Sbjct: 319 KDIQPDVMLNQLYRSTPLQSNFGVNNVVLFNGVPRQASMIDLLKGYIAFQDEVIVRRTQF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DRAH+L GL IAV NLD ++  IR S +P  A   LM+                
Sbjct: 379 DLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLME---------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q +AIL+++  RLTGL R+ I NE   L I+I +  DILS+ +
Sbjct: 423 ----------GFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDLLIKIADFQDILSNHA 472

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L II+ EL  VK + + PRR+ I++ + D+EDED I  E++++T+S  GY+KR+    
Sbjct: 473 RVLQIIRDELSEVKAKFNDPRRSEIIDAIADVEDEDLIPVENIIITLSSNGYIKRLTTDT 532

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG  G+ +  +D +     +STH  +L F+  G VY+ K + +P  S  ++G
Sbjct: 533 YHVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYRIKGYNVPEFSRTSKG 592

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
              IN++S+ + E I  ++P+ +D  S    ++ F TK G ++R    ++  IN++GKIA
Sbjct: 593 IPAINLISMEKTENIRALVPYSQDHDSK---FLFFVTKQGIIKRTTFDEYENINKNGKIA 649

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +KL+  DE+  V +     +I++    G+ VRF  + +R   GR + GV+G ++  G  V
Sbjct: 650 IKLNEDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPL-GRTARGVKGFNV-DGGYV 707

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I +A                                       +++EG            
Sbjct: 708 IGLA---------------------------------------TNLEG------------ 716

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             ++ILT++E GFGK++S  D+R++ R  +G++  +V++  + G LV +  V  ++  ++
Sbjct: 717 --EYILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQ--KSGKLVCMRAVRGDEDCMI 772

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRESEIVD 904
           ++  G +IR+ + ++ + SR+ +GV + +  KD+ V SV   E   +SE+VD
Sbjct: 773 MTAGGIVIRISLKQVSVYSRSAQGVKVIN-VKDDIVSSVAILEPEEDSEVVD 823


>gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
 gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
          Length = 814

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/888 (40%), Positives = 553/888 (62%), Gaps = 90/888 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I +V +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK  
Sbjct: 3   EDNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVDF PN+D    EPVVL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + +P+I ++ L +II GPDFPTGA ILG+ GIK+AY+TGRG + +R
Sbjct: 183 PHNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYILGKAGIKDAYSTGRGKVKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE    +RE+IV+TEIPYQVNK+ ++EKIA+LV++KRI  I+D+RDESDR+G R+V
Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ++A+++LN LY+YT L++ F +  +AL    P+   L  +++ ++  +++VV R
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGVPKVLNLKELIEYYIEHQKDVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + +  ++   ++           
Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q++AIL+++L RL+GL  D +  E   L   I   L IL
Sbjct: 412 ---------------FGLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETIAYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S   LL +I  E+  +K++    RR++I+  EG +D+  E+ I +ED+++T++  GY+K
Sbjct: 457 NSEENLLNLIIDEMEEIKEKFSDDRRSKIIPDEGEIDI--EELIEKEDVLLTLTKDGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+S G VY  K + +P G
Sbjct: 515 RLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG A+INIL L  GE+IT +M   E         +V  TK G +++    +F  I 
Sbjct: 575 SRQSRGIAIINILKLESGEKITEMMTLSELNKDSQ---IVLQTKMGTIKKTDAENFTNIR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   D ++SV    +E +++++TK G  ++F  + +R   GR + GVR I L
Sbjct: 632 KNGIIAISLKEYDRLISVRQIDKEEELIISTKNGMTIQFNSADLRSM-GRIAQGVRAIKL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+SM                          I GD                     
Sbjct: 691 DKDDEVVSMN-------------------------IKGD--------------------- 704

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E ++L V+E  +GK+TS  +F+  NR GKG++   V++  + G ++   PV+ 
Sbjct: 705 -------ETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKIIDTLPVDL 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVER 896
           ++ I++VS  G +IR+ V +I I  R T GV + + T +++R+VSV +
Sbjct: 756 DNDIMMVSLSGDMIRLNVRDISITGRNTVGVKLKNLTDENDRIVSVTK 803



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 6/110 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +EL  KE  +LT+++ G+ KR     +++ NR GKGI A +     E   +  +   N 
Sbjct: 494 IEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTK---EGDFIKKIKTTNT 550

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++ ++  +  G +  +   E+   SR ++G+ I +  K E   S E+I E
Sbjct: 551 HEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLE---SGEKITE 597


>gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 826

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/901 (41%), Positives = 545/901 (60%), Gaps = 92/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID+      +  ++ +++I++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 KEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S+R+G R+
Sbjct: 249 RAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R A+A+VILNQLY++T +Q  F V M+AL   +P    L+ +L  ++  +EEVV 
Sbjct: 309 CIELRRDANANVILNQLYKHTQMQDTFGVIMLALVNNEPRVMNLLDMLNHYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S   + A+  L+            
Sbjct: 369 RRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLI------------ 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ +AI+++RL  LTGL R+ +  E   L   I E   I
Sbjct: 417 --------------AAFDLTEVQAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E++ ++D+    RRT I     D+  ED I RED+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEIIVIRDKYGDERRTAIGFDEYDISMEDLIPREDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   +ED++ DLF+ STH  V+FF++ G VY+ K + +P   
Sbjct: 523 MTVDTFKSQNRGGKGIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT I+P  E        Y+  ATK G V++  ++D+  + +
Sbjct: 583 RTARGTAIINLLQLMPEEKITAIIPIKE---YVQGEYLFMATKKGLVKKTPITDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    E DI+L TK GQC+RF    +R   GR S+GVRG++L 
Sbjct: 640 TGLAAITLREEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVR-STGRTSMGVRGMNLG 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+ M +                +   +  LI                   +SE+  
Sbjct: 699 DRDEVVGMQL----------------NTQGEHLLI-------------------VSEKGM 723

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +     +F    S+   GK    Y  +I+ ++G                +V V  V+++
Sbjct: 724 GKRTEMSEF---TSQNRGGKGVKCY--KITEKTGN---------------VVGVKAVSED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAES 908
           ++I++++ +G +IR+  N I +  R T GV + +   DE+V S+ ++RE  SE+ + AE 
Sbjct: 764 NEIMIINTEGIIIRMECNSISVLGRITSGVKLINLHDDEKVASIAKVREASSELEENAEE 823

Query: 909 T 909
           T
Sbjct: 824 T 824


>gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
 gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
          Length = 828

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R LL++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  +                                                 R 
Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q+     Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  V  I    RAT GV I     D ++V+
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800


>gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
 gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
          Length = 817

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/892 (42%), Positives = 551/892 (61%), Gaps = 84/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                           TE+                   
Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEI 810


>gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10]
 gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10]
          Length = 840

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/896 (41%), Positives = 548/896 (61%), Gaps = 91/896 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE  E+ I  + I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K Y K     GE +  YHPHG+AA+YD+L RMAQD+SLR  L++G GNFGS DGD  AA
Sbjct: 62  EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGE +DG  AV+DNP+I +D LM+ I+GPDFPT A I+G+ GI+ A+ TGRG 
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKRGIREAFKTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
           +V+R  + IE+  G+R +I++TEIPY VNKA ++EKIA+LV++KRI  I+ ++DES R+ 
Sbjct: 242 LVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGREE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAF 361
             R+VI+LKR A+ +V+LNQLY+ T LQ  FSVNMVA+       Y+P    L  I+  +
Sbjct: 302 PVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDYY 361

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A +E+V+ RRTK+ L+KA  RAH+L GL  A+ +LDEV++ IR S     A+  L +R 
Sbjct: 362 IAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSERF 421

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                       S+ Q +AI+++RL RLTGL R+ +  E N L 
Sbjct: 422 G--------------------------FSDKQAQAIVDMRLGRLTGLEREKLETEYNELL 455

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +IK   D+L++   +  IIK EL  +K++    RRT+I     +++ ED I  E+ V+T
Sbjct: 456 EKIKYYKDVLANEILVHQIIKDELSVIKNKYADERRTKIEIDEDEIDIEDLIQEEESVIT 515

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++H GY+KR+P   Y++QRRGGKG  G+  R+EDFV +LF+ STH  ++FF++ G VY+ 
Sbjct: 516 MTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRL 575

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P    QA+G A++N+L L+  E++TT++P  E +     LY++ ATK+G V++  
Sbjct: 576 KAYEIPESGRQAKGTAIVNLLQLDGDEKVTTVIPIQEYKEG---LYLIMATKNGLVKKTD 632

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L ++  I + G  A+ L   D+++ V+      DI+L+T  G  +RF  +  R   GR S
Sbjct: 633 LMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPI-GRVS 691

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+GI L +GD VI M             +C               T+  T        
Sbjct: 692 QGVKGIELDEGDFVIGM------------EVC---------------TDNTT-------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L V+E GFGKRT   ++++  R GKG+    +++  + G  
Sbjct: 717 ------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGKS 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +  V++ D I+L+S  G++IR+ V+EI I  RAT+GV +   ++   VVSV R+
Sbjct: 757 IGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLMRMSEGNNVVSVARM 812


>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 832

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/891 (41%), Positives = 546/891 (61%), Gaps = 86/891 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V I DEM+N Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M QMG+  +K + K ARI
Sbjct: 16  NVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPFRKSARI 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG++++YDA+ RMAQD+S R + + GQGNFGSVDGD  AA RYTE R+ +
Sbjct: 76  VGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYTEARMSR 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  +L D+ K+TVDF  N+DGS QEPVVL +R+P++LVNG  GIAVGMATNIP HNLGE
Sbjct: 136 ISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIPPHNLGE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DG +A ID+PDI +D LM  I+GPDFPT  VILG++GI+ AY TGRG I IR    ++
Sbjct: 196 VIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVILGKSGIREAYETGRGRIKIRSKVAVK 255

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316
             +  ++QIV++EIPY VNKA +++KIAELV++KR+  I D+RDE+D + G R+V+ELKR
Sbjct: 256 NMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIRIVVELKR 315

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +A ++LNQLY++T LQ  + V  +AL   +P+  +L  IL  +VA ++E++VRRTK+ 
Sbjct: 316 DTNATIVLNQLYKHTQLQDTYGVINLALVDGQPKVLSLKQILHYYVAHQKEIIVRRTKFD 375

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L G  IA+ N+DEV++IIR S + + A+  LM R                
Sbjct: 376 LKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDR---------------- 419

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       L+++Q +AIL++RL RLTGL R+ I  E   L  +I E   IL+    
Sbjct: 420 ----------FALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKL 469

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +LGIIK EL  +KD+    RRT     + D + ED I  E++VVT++H+GYVKR+    Y
Sbjct: 470 VLGIIKDELTEIKDKYGDDRRTSFDIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIAADTY 529

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ RGGKG S +  R+ DF+  +F  STH  +LFF++ G  Y+ K + +P+G   +RG 
Sbjct: 530 RAQNRGGKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGT 589

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++NIL L+  E ITT++     E+   + Y V AT+HG +++  ++D+    ++G   +
Sbjct: 590 AIVNILQLDPDESITTMIQVKTFEA---DKYFVMATRHGLIKKTAMTDYESSRKNGINGI 646

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V+      D+++ T LG  +RF +  +    GR S+GVRGI L   D V+
Sbjct: 647 NLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNA-TGRMSMGVRGIGLRADDHVV 705

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M +++ AD +    +C  +    +R   S D   +                        
Sbjct: 706 GMDLLI-ADNNV---LCVAEKGYGKR--TSADQYRV------------------------ 735

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
                   +K  GK   +Y  + + ++G                LV    + D  +I+++
Sbjct: 736 --------QKRGGKGIQTY--KCTKKTGN---------------LVGFSVLEDGGEIMMI 770

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ G +I++  ++I    R+T+GV +     DER+ ++ +++  E +D+ +
Sbjct: 771 NNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIATICKVQNEEPLDDVD 821


>gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
 gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
          Length = 850

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/894 (41%), Positives = 556/894 (62%), Gaps = 86/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV  +K Y K A
Sbjct: 20  ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L+ G GNFGSVDGD  AA RYTE RL
Sbjct: 80  RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGDGAAAMRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++DNPD     LME++ GPDFPTG V++G++GI+ AY TGRGSI++R    
Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYETGRGSIILRAKVE 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR+G RVVI+++
Sbjct: 260 IEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDVR 319

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ FS NM+A+    P   +L  IL+ ++  + EV+ RRTKY
Sbjct: 320 RDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLEHQVEVITRRTKY 379

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE+++IIR S   E A+ +L+                 
Sbjct: 380 ELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I  E N L  +I++   ILSSR 
Sbjct: 424 ----------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRD 473

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +ELL ++ +    RRT ++ G +L +EDED I  ED++V+++H GY+KR+P +
Sbjct: 474 RVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTT 533

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF+  G VY+ K + +P     A+
Sbjct: 534 EFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAK 593

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L++N GE+I  ++   + ++      ++F T +G V+R  +SDF  I  +G I
Sbjct: 594 GIPIVNLLNINSGEKIEAVINVSDRKNDVQK-DLLFVTLYGTVKRTPVSDFANIRSNGLI 652

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++++     Q  ++++ T LG  + F  S +R   GR++ GVRGI L + D 
Sbjct: 653 AIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSATGVRGIRLRENDY 711

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+  A VL+ D++                                               
Sbjct: 712 VVG-ADVLNPDSE----------------------------------------------- 723

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +  +SEKGFGKRT + D+ I  R GKG++  ++++ N  G L  +  V+ N+ I+
Sbjct: 724 -----VFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLSGLTTVSGNEDIM 776

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           L++DKG +IR  + ++    R+T GV +    +D +V ++ ++ + E  DEA S
Sbjct: 777 LITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQE--DEASS 828


>gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS]
 gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
 gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A
 gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes]
 gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS]
 gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
          Length = 828

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  +                                                 R 
Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q+     Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  V  I    RAT GV I     D ++V+
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800


>gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311]
 gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311]
          Length = 811

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/892 (42%), Positives = 551/892 (61%), Gaps = 84/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLIALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                           TE+                   
Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEI 810


>gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672]
          Length = 805

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/888 (41%), Positives = 546/888 (61%), Gaps = 87/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +EKGI  +SI D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MG+  NK Y
Sbjct: 4   KEKGIIDISIEDSIKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GK+HPHG++A+YD L R+AQD+S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 64  KKSARVVGDVIGKFHPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K    LL D+ KDTVDF PNYDGS +EP+VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 124 EVRMAKITDELLLDIDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  +  IDNP+  LD +++ I+GPDFPT  +++G + +K AY TGRG+I IR
Sbjct: 184 PHNLGEVVDALIHRIDNPESTLDDILKFIKGPDFPTAGILMGVSDLKTAYLTGRGAIKIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    +EQIV+TEIPYQVNK++++EKIAELVR+K IV I +LRDESDR G RVV
Sbjct: 244 ARAEIQQLKSGKEQIVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+G   DVILNQLY++T ++  F +N VAL   +P+   L+ IL  F+  R  +V R
Sbjct: 304 IEIKKGELPDVILNQLYKFTQMEVTFGINTVALVNGRPQTLPLLKILDEFIGHRITIVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+LL KA +R H+L GL  AV N+DEV+ II+ S + + A+ +L+ R           
Sbjct: 364 RTKFLLRKAEERLHILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDR----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S++Q  AIL+++L +LTGL  + +  E       I+    IL
Sbjct: 413 ---------------FSFSDLQVSAILDMKLQKLTGLEIEKLVEEYKETLKNIEYYKSIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   L+GIIK ELL +KD+    RRT IV    ++  ED I   +MVVT+++ GY+KR 
Sbjct: 458 NNHQILMGIIKDELLEIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS + +Q+RGGKG+S  + + EDF+  L + S H+ +LFF++ G ++  KV+ LP  +P
Sbjct: 518 PLSFFSSQKRGGKGKSATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAP 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
             RG+ + N+LS +QGE I +++   + +   ++ Y+   TK+G V++  + +F +  RS
Sbjct: 578 GTRGRHISNLLSFSQGEYIASVVTLSDLD---HDKYIFMCTKYGIVKKTAVEEF-KSGRS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G +AMKL   DE++S    T  ++I + T+ G+ ++F    +R   GR + GVRGI+L +
Sbjct: 634 GIVAMKLRENDELVSTVITTDNDNITIATRNGKTIQFESKEVRDM-GRTATGVRGITLEE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SM +                        ++G    +T   N       +S+ R Q
Sbjct: 693 DDYVVSMEV------------------------LTGAPFILTVTSNGYGKCSLVSDYRIQ 728

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                       S  G G + S    +++ ++G                +V    V   D
Sbjct: 729 ------------SRGGKGLKLS----KVTPKTG---------------PIVGAKQVKLED 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++L+S  G +IR+ V++I +  R T+GV + S A DE +VS   ++E
Sbjct: 758 DVMLMSKTGKIIRIAVSDIPVLGRDTQGVKLMSVADDE-IVSFAIVKE 804


>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 842

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/913 (41%), Positives = 547/913 (59%), Gaps = 85/913 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD E    I S  +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   SDNESTARIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVD DPPAA
Sbjct: 62  DRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAA 121

Query: 128 ERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   A   LL D+  +TVDF  NYDGS QEP+VL AR P +L+NG  GIAVGM
Sbjct: 122 MRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E+VDG +A+I NP++    LM+ I  PDFPTGA+I+G+ GI+ AY TGR 
Sbjct: 182 ATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIMGQEGIREAYTTGRS 241

Query: 247 SIVIRGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ +E         R+ I++TE+PYQ NKAAM+EKIAELV EK++  IAD+RDE
Sbjct: 242 SITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RVVIELKR A   V+LN LY+ T LQ+ F VNM+A+   +P   TL   L+AF+
Sbjct: 302 SDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGEPRTLTLRDALQAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEV+ RRT+Y L KA +R H+L G  +A+  LD V+ +IR + +  TAR EL     
Sbjct: 362 DFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREEL----- 416

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + LSE Q   IL+++L RLT L  + I+ E   L  
Sbjct: 417 ---------------------QAVLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVR 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL+ R R++ II +EL  +K    +PRR+R+     ++  +D I   + V+ +
Sbjct: 456 QIADLRDILARRERVMQIISEELQQLKARFASPRRSRLCLEDGELGTDDLIENRETVIFL 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+ L  ++ Q R  +G++G  ++++D +   F   +H ++LFF++ G VY   
Sbjct: 516 TEQGYIKRMGLEEFQVQGRATRGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLP 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
             ++P GS  ARG A++ +L + + ER+T+++P   F +DE      Y+V  T+ G +++
Sbjct: 576 AHQIPQGSRAARGSAIVQLLPITREERVTSMVPVSQFSDDE------YLVMLTRGGYIKK 629

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFA 717
             LS F  +  +G IA+ L+  DE+  V      +D+++ T+ G  +RFP     +R   
Sbjct: 630 TALSAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMSIRFPADDEQLRPL- 688

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVR I+L  GD ++SM I+                                    
Sbjct: 689 GRATRGVRAITLNAGDDIVSMDII------------------------------------ 712

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             S E  ++ ER  E KL   ++L ++++G GKR++  +FR  NR GKG+ AT   + ++
Sbjct: 713 --SAESVMAAEREGE-KLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKFRQASD 769

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              L A+  VN  D+I+LV+ +G ++R     I   SR   GV++     ++ +V V  +
Sbjct: 770 --ELAALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVT-V 826

Query: 898 RESEIVDEAESTE 910
             + +V E E++E
Sbjct: 827 VPAALVAEEETSE 839


>gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066]
 gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066]
 gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03]
          Length = 811

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/892 (42%), Positives = 551/892 (61%), Gaps = 84/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                           TE+                   
Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEI 810


>gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
          Length = 831

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/889 (39%), Positives = 551/889 (61%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N++ +   E+I T++   + +      + V  T++G +++ ++S +  I + G
Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K 
Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKA 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +V+                                                  
Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01]
 gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01]
          Length = 805

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/891 (42%), Positives = 534/891 (59%), Gaps = 94/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDALAR+AQ W+LR  L++GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ K+TVDFRPNYDGS +EP VL +  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+IDNP I L+ +M  + GPDFPTG   L R GI+ AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGK-LSRKGIQEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 IEE-KGQRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGAS  V+LNQLY++T+LQ+ F+VN++A+   +P+   L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGASPQVVLNQLYKHTALQTSFTVNLLAIVNGEPKVLPLLSLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR+ LM+R               
Sbjct: 362 DLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RL  L R+ +  E   L  EI     IL    
Sbjct: 407 -----------FGLSEIQAQAILDMRLQRLVALEREKLLEEYRELMEEIARLKAILEEEG 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL   +K++LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLWAEVKKDLLRVKEKYGDARRTVITEFEDSFNPEDLIEDEPMVITLTAQGFLKRLPLES 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED    +F+   H  +L F++ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLIAGKTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671
             +  +L L + E +  ++       S   L    Y+VFAT+ G V+R  L ++  +  +
Sbjct: 576 VHVKTLLPLAEEEEVAALL-------SVRGLDGEGYLVFATERGLVKRTALREYQNLGAA 628

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA++L   D ++ V     E++ +L T+ GQ +RF +  +R   GR+S GV GI   K
Sbjct: 629 GLIAIRLLEGDRLIGVALSDPEDEAILATEEGQAIRFALEEVRA-TGRDSQGVTGIRFKK 687

Query: 732 -GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V+S                                  + ++K    V+        
Sbjct: 688 PGDRVVS----------------------------------LVTVKPGEMVD-------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   
Sbjct: 706 ---------LLAVSTRGYGKRTPLAEYPLQGRGGMGVITYKVS--TKVGRLAALLKVRGT 754

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++++S KG  IR PV +IR  SR T GV + +  +D+ VVS   + E +
Sbjct: 755 EDLLVLSKKGLAIRTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEEQ 805


>gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
          Length = 811

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/890 (40%), Positives = 543/890 (61%), Gaps = 97/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K A
Sbjct: 4   ISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE R+
Sbjct: 64  RIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARM 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP HNL
Sbjct: 124 SKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VDG + +IDNP+I    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG   
Sbjct: 184 GELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGKVK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +  +++ EIPYQ+NK+ ++E+IA LV+EK+I  I DLRDES+R+G RVVIELK
Sbjct: 244 IEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  +++ R +V+ RRT +
Sbjct: 304 KGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRTLF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++               
Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYA------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS  +
Sbjct: 411 -------------FTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSHDN 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++  I+KQELL VKD     RRT I E  +++  ED I  E+M++T ++ GY+KR+  + 
Sbjct: 458 KIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEANK 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y++Q RGGKG +G+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+RG
Sbjct: 518 YKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRG 577

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + + N+L + + E+I  I+    F +++       +VF TK G V++  L +F  IN  G
Sbjct: 578 RLISNLLRIGEEEKIRAIIKTRVFDKEKE------LVFVTKQGIVKKTSLEEFKNINTGG 631

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            IA+K    D+++ V      EN++ + T+ G  VRFP   +R   GRN++GV+GI L +
Sbjct: 632 LIAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+S  ++                                                  
Sbjct: 691 GDEVVSALLI-------------------------------------------------- 700

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVN 848
             K KE  ILT++E G+GKRT   ++   NR GKG+   R  D     + G +V+V    
Sbjct: 701 --KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCND-----KTGNIVSVLTAL 753

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D ++++ ++  G +IR P+N I   SRA +GV+I   A DE+V S+ RI+
Sbjct: 754 DEEELVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803


>gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1]
 gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
 gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A
 gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1]
 gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
          Length = 828

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  +                                                 R 
Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q+     Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  V  I    RAT GV I     D ++V+
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800


>gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3]
 gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3]
          Length = 828

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/887 (41%), Positives = 540/887 (60%), Gaps = 85/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K + K A
Sbjct: 6   IVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YD+L R+ QD+SLR  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATN+  HNL
Sbjct: 126 KSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLAPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+G +A+I+ P+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR  + 
Sbjct: 186 REVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAL 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR+G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V  +AL    P+   L  +++ +V  R E+V+RRT+
Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVINLALVDGVPKILNLKEMMQYYVKHRNEIVLRRTR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R              
Sbjct: 366 FDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q +AILE+RL RLTG+ R  I  E   +   I+E   IL+S 
Sbjct: 412 ------------FGLSEIQAKAILEMRLQRLTGMERQKIDTEYIEVLALIEELRFILNSP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + + II++ELL VKD     RRT IV    D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 EKQMEIIREELLKVKDVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   +++DF+  +FI STH  +LFF++ G  Y  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVTGAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G++L NI+ L  GE+I T +     E      ++V AT HG V++  L +F    R+G  
Sbjct: 580 GRSLANIMELPPGEKIRTYINIRNFEEPG---FIVMATTHGIVKKTALEEFSHPRRTGIA 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ +D  DE+L       ++ I+L    G  VRFP + +R   GR ++GV+GI+L + ++
Sbjct: 637 AITIDEGDELLDARLTDGDHQIILAKNSGFVVRFPENEVRPM-GRTAMGVKGITLDEDEK 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            I+M                                 +T+ + D++              
Sbjct: 696 CIAM---------------------------------VTTRRMDTA-------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ GFGKR+   D+R++ R  +G+    +    +IGALV +  VND D +I
Sbjct: 709 -----LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKPHEKIGALVGLLDVNDEDDLI 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           L++  G + R  V++IRI  R T GV +    + + + ++ R+ +S+
Sbjct: 762 LITVNGIVNRQHVSDIRITGRNTSGVRLIRLMQGDSISALARVPKSD 808


>gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii]
          Length = 683

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/685 (50%), Positives = 471/685 (68%), Gaps = 12/685 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 240

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 241 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 301 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 361 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 420

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 421 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 481 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 541 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 601 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCT 691
           ++  +GK+A+KL   DE++ V+  +
Sbjct: 658 RLRTAGKVAIKLVDGDELIGVDLTS 682


>gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
 gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
          Length = 840

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/890 (42%), Positives = 545/890 (61%), Gaps = 91/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++   +  V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  + +     
Sbjct: 6   DDNHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSLSHRSP 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YDAL RMAQD+S++  L++GQGNFGSVDGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  LL DL KDTVDF PNYD S  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L E++D  V  IDNP+  ++ +M+I++GPDFPTG +I GR GI +AY TGRG I +
Sbjct: 186 PPHRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIFGRKGITDAYTTGRGRIKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+  G++E I++ E+P+QVNK+ ++E IA+LVR+K I  I+++RDESDR+G RV
Sbjct: 246 RAKTHIEQ-KGNKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELKR A ++++LN L++ T +Q  F + M+A++  +P+ F L+ +   F+  R+ V++
Sbjct: 305 VMELKRDAMSEIVLNNLFKSTQMQVTFGIIMLAIHNKEPKVFNLMELFDLFLNHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IAV N+DEV++IIR S +   AR  LM R          
Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSR---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AILE+RL RLTGL  + I NEL  L   I     I
Sbjct: 415 ----------------FSLSEIQAKAILEMRLRRLTGLEIEKIENELAELLKTIAYLEGI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  ++  II++EL+ + ++  TPRRT IV+   D++ ED I  E MVVT++H GY+KR
Sbjct: 459 LKSEEKINQIIREELIEIGEKYRTPRRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP+ +Y  Q RGGKG++ V   D+DF+   F  +TH +++F +  G +Y  KV+R+P GS
Sbjct: 519 VPVKLYEKQHRGGKGKTAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYRIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+GKA++N+++L   E+I  I+P   F E++       +VF T++G V+R  LS++  
Sbjct: 579 RTAKGKAVVNLINLQPDEKIMAIIPTTDFSEEKG------LVFFTRNGIVKRTNLSEYSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I  +G  A+ LD  DE++  +    E   + + TK G C+RF +   R   GR S GV  
Sbjct: 633 IRSNGVRAINLDENDELVEAKIVKPETKWLFVATKKGLCIRFKVEDAREI-GRVSRGV-- 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                       AI    D DY   +C                                 
Sbjct: 690 -----------TAIKFKIDGDY---VC--------------------------------- 702

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 L+ +E  IL +SEKG GKRT++ ++R  NR+GKG+ +  ++  ++ G +V V  
Sbjct: 703 --GAATLESEEDEILMLSEKGLGKRTTASEYREQNRAGKGVISMKLT--SKTGDVVGVVM 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V ++  ++ ++  G +IRV +  IR A R T GV + S  K ++VVS+ +
Sbjct: 759 VEEDKDLMCLTSVGKMIRVDMETIRKAGRNTSGVKVVSVEKKDKVVSMAK 808


>gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 834

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/903 (41%), Positives = 562/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 834

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/903 (41%), Positives = 562/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/903 (41%), Positives = 561/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D +++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 846

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/889 (39%), Positives = 551/889 (61%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y 
Sbjct: 4   EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYTE
Sbjct: 64  KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR 
Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+VI
Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ RR
Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM  ++N         
Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL 
Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+ 
Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P     
Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N++ +   E+I T++   + +      + V  T++G +++ ++S +  I + G
Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K 
Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKT 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+ +SM +V+                                                  
Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D+
Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
 gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
          Length = 867

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/882 (40%), Positives = 546/882 (61%), Gaps = 85/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD PAA RYTECRL
Sbjct: 72  RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ K+TVD   N+D + +EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 AKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNP+I ++ LM+ I  PDFPTGA I G  G+K+AY TGRG I++R  + 
Sbjct: 192 SEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIYGLQGVKDAYETGRGRIIMRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IVVTEIPY VNKA ++E IA+LV+E ++  I+++ DE+ RQG R+V+++K
Sbjct: 252 IE-SDDTHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A++ILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRT++
Sbjct: 311 RDANANIILNKLFKMTALQSSFSVNCIALVKGRPRLLSLQECVKYFVEHRHDVTIRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVVRIIR S  P  A+  L +R               
Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L ++Q++AI+++RL++LTGL  +++  E + +   IK+  +IL++  
Sbjct: 416 -----------FDLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKDLQEILNNPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ 
Sbjct: 465 RCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  +  K + +P G   A+G
Sbjct: 525 FKEQARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDIPEGDKTAKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+L+  + +   +      DE   ++ YVVFATK G V++  L  + +   +G 
Sbjct: 585 RAIQNMLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRHYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ ++  DE++ V      N++++  + G+  RF   A+R   GR S GVRG+ L    
Sbjct: 645 IAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTM-GRVSTGVRGMRLDDDG 703

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI M +V                          DTE+ T                  
Sbjct: 704 EDGVIGMIVV-------------------------NDTEKET------------------ 720

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LVA+  V D +
Sbjct: 721 --------VMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITE--KTGKLVAIKNVTDEN 770

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            +++++  G +IR+ V E R+  RAT+GV + + AK   V++
Sbjct: 771 DLMIINQSGIVIRLAVAECRVMGRATQGVRLINLAKKNDVIA 812


>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
 gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
          Length = 852

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/889 (41%), Positives = 547/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E + I  ++I +EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRILFGM ++GV  NK
Sbjct: 3   EGENENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR  L++GQGNFGS+DGD PAA R
Sbjct: 63  PHKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  +L D+ KDTVD++ N+D S +EPVVL A+ P +L+NG  GIAVGMATN
Sbjct: 123 YTEARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEV+ G +A I+N +I +  LME +  PDFPTG +I G  G+K A+ TGRG IV
Sbjct: 183 MAPHNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIYGYNGVKAAFETGRGRIV 242

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG ++IE K  G++E IV+TEIPY VNKA+M+EK A+L+ EK+I  I+ +RDESDR G 
Sbjct: 243 MRGKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V ELKR A   VILN LY++T LQ+ FSVN VAL   +P    L  ++  +V  R EV
Sbjct: 303 RIVYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVHYVDHRHEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RRT+Y L +A  RAH+L G  IA+ +LDEV+ +IR S +PETAR  L++R        
Sbjct: 363 VIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAIL++RL RLTG+ R+ I  E   +   I+E  
Sbjct: 415 ------------------FDLSEIQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  + + IIK EL  +KD     RRT I     D   ED I  E++++TVSH GYV
Sbjct: 457 EILENEDKRMEIIKTELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L+ YR Q RGG G  GV  +++DF   LF  STH  +L F+  G ++  K + +P 
Sbjct: 517 KRTALTEYRTQGRGGVGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G+  ++G+ + N++++   +RI +I+   +  D    NN ++V  TK G +++  L  + 
Sbjct: 577 GNKTSKGRPIQNLINIQSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ +   D++++V+    +  I++  K G+ + FP +A+R   GR + GV+ 
Sbjct: 637 RPRTNGIIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPM-GRTATGVKA 695

Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I+L  + D VI M             +C               +E+  +L          
Sbjct: 696 ITLTGQDDFVIGM-------------VCA--------------SEDTATL---------- 718

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L VSE G+GKR+   ++RI+NR GKG++A +V+  ++ GALVA+ 
Sbjct: 719 ---------------LVVSENGYGKRSYLNEYRITNRGGKGVKAMNVT--DKTGALVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V D D +++++  G +IR+ ++ +RI  RAT+GV +      +++ SV
Sbjct: 762 EVTDADDLMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810


>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
 gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
          Length = 840

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/883 (42%), Positives = 545/883 (61%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 9   VTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y  + RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATNIPTH+L
Sbjct: 129 SKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATNIPTHHL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +A+  +P+I++  LME I GPDFPT  +I+GR+GI+ AY TGRGSIV+R    
Sbjct: 189 GEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIMGRSGIRRAYETGRGSIVVRARVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +E I++TEIPYQVNKA ++E+IAEL REK+I  I D+ DESDR G R+VIE++
Sbjct: 249 IEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA VI+N LY+ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++
Sbjct: 309 RDISASVIINNLYKMTALQTTFGINMLALVDNHPKVLNLKQILYHYLEHQKIVIRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ N+D V+ +IR S   ETA+  LM +               
Sbjct: 369 ELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTK--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R  I  E  +L   I +   +L+   
Sbjct: 414 -----------FQLSDKQAQAILDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+L II++EL  +K +    RRT I+ G ++++EDED I  E++ +T++  GY+KR+PLS
Sbjct: 463 RILEIIREELEEIKIKYADKRRTEILTGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G  G+   ++DFV  L   S+H ++LFF++ G VY+ K + +P     A+
Sbjct: 523 TYRSQRRGGRGIQGMSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPEYGRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  LIN+L +   E++  ++   E      N ++ F TKHG V+R  +S F +I +SG  
Sbjct: 583 GIPLINLLGIESQEQVNAVINVSE---FTENSHLFFTTKHGVVKRTDISQFAKIRQSGLR 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++SV+      +I++ TK GQ + FP + IRV  GR + GVRGI L + D+
Sbjct: 640 AVDLRENDELISVQITDGNKNIIIATKQGQSIYFPENNIRVM-GRTAAGVRGIRLREDDE 698

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M I                                  L++D                
Sbjct: 699 VIGMEI----------------------------------LEDD---------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              Q +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V+  + I+
Sbjct: 709 ---QKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVSGEEDIM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           L++  G +IR  +  +    R+  GV +    ++E+V +V ++
Sbjct: 764 LMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKV 806


>gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b F2365]
 gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459]
 gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816]
 gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220]
          Length = 842

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/889 (42%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M +                                  L++D  V       
Sbjct: 693 LREDDEVIGMEV----------------------------------LEDDEKV------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8]
 gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus]
 gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8]
          Length = 805

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/882 (42%), Positives = 530/882 (60%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDAL RMAQ W+LR  LI+GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ KDTVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+I+NP I L+ +M  + GPDFPTG   L + GIK AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGK-LSKKGIKEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+  G R  +VVTEIPYQVNKA+++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 VEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LNQLY++T+LQ+ F+VN++A+   +P+  +L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR  LM+R               
Sbjct: 362 ELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   +
Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL  +K +LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLES 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED  T +F+   H  +L F++ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671
             + ++L L + E +  ++       S   L    Y+VFAT+ G V+R  L ++  + ++
Sbjct: 576 VHVKSLLPLAEDEEVAALL-------SVRGLDQEGYLVFATERGLVKRTALKEYQNLGQA 628

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA++L   D ++ V     E++ +L T+ GQ +RFP+  +R   GR++ GV G+   K
Sbjct: 629 GLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKK 687

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            +  +   +V+      D                                          
Sbjct: 688 PEDRVVSLVVVKPGEMVD------------------------------------------ 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L+VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   +
Sbjct: 706 --------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVS--TKVGRLAALLKVRGGE 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++++S +G  IR PV EIR  SRAT GV + +  +D+ V S
Sbjct: 756 DLLVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVAS 797


>gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 812

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/887 (39%), Positives = 552/887 (62%), Gaps = 88/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  +M+  Y+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K + K A
Sbjct: 12  IEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSMHELGLTPDKSFHKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G  M  YHPHG+++IYDA+ RMAQ++S+R +L+EG+GNFG++DGDPPAA RYTE ++
Sbjct: 72  NVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTLDGDPPAAYRYTEAKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L DLGKDTV+FRPN+D   QEP VL +R+PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 132 NKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSNGIAVGMATSIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V +IDNPD  LD +M  I+GPDFPTGA+I+GR  IK AY TGRG I++R  + 
Sbjct: 192 GEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIMGREAIKKAYETGRGKIIVRAKTE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE+    + +I+VTEIPYQVNKA ++EKI +LVR+K+I  + DLRDES ++ G ++VIE 
Sbjct: 252 IEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLRDESSKKTGIKIVIET 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  + +V+LN L++++SLQ ++SV ++++   +P+   L+ IL+ ++ +++EVV RRTK
Sbjct: 312 RRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGEPKILNLVDILQYYLKYQKEVVTRRTK 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA +R H++ GL IA+ N+DEV+ IIR      +A  + MQ+            L+
Sbjct: 372 FDLNKALERLHLVQGLLIAIDNIDEVIEIIR------SAYDDAMQK------------LM 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D  S          LSEVQ  AIL++RL RL GL ++ +++E   LG +I     IL S 
Sbjct: 414 DRFS----------LSEVQATAILDMRLRRLQGLEKEKLQDEERELGEKIAYFNSILESE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +LL IIK+E++ ++D+    RRT+I     +++ +D I  E++ +T++H GY+KR+P+ 
Sbjct: 464 EKLLSIIKEEIIEIRDKYKDVRRTQITSMPHEIDIKDTIPNEEVTITLTHQGYIKRLPVD 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+AQ+RGGKG S +  ++EDFV  L I S H  +LF ++ G +Y    + +P  S  A+
Sbjct: 524 TYKAQKRGGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIYNLNAYEIPQTSRTAK 583

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L L + E+I TI+   E+E   +N Y+V  TK G +++ ++S+F +  R G  
Sbjct: 584 GSNIINLLPLEKDEKIATIITTRENE---DNAYIVMCTKKGIIKKTRISEFTKSKRQGMK 640

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++        ++ L TK G  + F  + +R   GR + GV  + L K D+
Sbjct: 641 AINLKEDDELVNSLLTADNTNLFLVTKKGMAIMFEENTLRPM-GRTATGVIAMRLKKDDE 699

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++S+ I                                    ND  V             
Sbjct: 700 IVSLEIA----------------------------------SNDKQV------------- 712

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L +SE G+GKRT    +++ +R+G G++   +++  + G +     V ++D+++
Sbjct: 713 ------LIISENGYGKRTQVSKYKVQSRAGVGVKTYKITE--KTGNIADAKIVEESDEVM 764

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++  GTLIR PV EI + SR T GV +  + +++ + ++E I+  E
Sbjct: 765 IINSDGTLIRTPVAEISLLSRDTSGVKVMRSGENDIISAIEIIQSEE 811


>gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
 gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
          Length = 842

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/883 (42%), Positives = 544/883 (61%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 9   ITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATNIPTH+L
Sbjct: 129 SKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTHHL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +A+  NP+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI +RG   
Sbjct: 189 GEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSITVRGRVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R+VIE++
Sbjct: 249 IEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVIEVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++
Sbjct: 309 RDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N            
Sbjct: 369 ELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------------ 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   IL+   
Sbjct: 416 -------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+KR+PLS
Sbjct: 463 RILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P     A+
Sbjct: 523 TYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I +SG  
Sbjct: 583 GIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLR 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI L + D+
Sbjct: 640 AVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIRLREDDE 698

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI M +                                  L++D  V             
Sbjct: 699 VIGMEV----------------------------------LEDDEKV------------- 711

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V   + ++
Sbjct: 712 ------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLM 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           L++  G LIR  +  +    R+  GV +    +DE+V +V ++
Sbjct: 764 LMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232]
 gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A
 gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232]
          Length = 828

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/883 (42%), Positives = 556/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++++++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                          D +E+                  
Sbjct: 693 EDDRVVGASRIR-------------------------DNQEV------------------ 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 710 ----------LVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  V  I    RAT GV I     D ++V+
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R +E   K  F  T  ++G  KRT   +F  +N    G+RA    K+ E   L+ V   +
Sbjct: 602 RKEETAGKSFFFTT--KQGIVKRTEVSEF--NNIRQNGLRAL---KLKEGDQLINVLLTS 654

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             D II+ +  G  +R     IR   R+  GV      +D+RVV   RIR+++ V
Sbjct: 655 GQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709


>gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 817

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/884 (42%), Positives = 555/884 (62%), Gaps = 85/884 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVITIIKEEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQRRGG+G  G  + D+DFV +L   +TH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   E  S  N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTII--SEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      +DI++ TK G  VRF  S +R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKEGDELINVIRTNGNDDIIIGTKTGYSVRFNESDVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+VI                       A R  I+ D E                    
Sbjct: 693 EGDEVI----------------------GASR--ITDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN +
Sbjct: 709 ---------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLVTVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + I++++D G +IR  V +I    RAT GV I    +D +++++
Sbjct: 758 EDIMVITDTGVMIRTSVADISQTGRATLGVKIMRLDQDAKIMTL 801


>gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
 gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
          Length = 810

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/717 (47%), Positives = 489/717 (68%), Gaps = 30/717 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I++E++ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 7   ILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G+V+ K+HPHG+AA+YDAL R+AQD+S R LL++G GNFGSVDGD  AA RYTE RL
Sbjct: 67  WVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 127 SKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +ID+PD  ++ LM+ I+GPDFPTGA+ILGR GI +AY TGRGSI++R  + 
Sbjct: 187 GEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALILGREGILDAYRTGRGSIILRAATQ 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ SG + +IVVTEIPYQVNKA ++EKIAELVREKRI  I DLRDESDR+G R+VIEL+
Sbjct: 247 IEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIVIELR 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R     V+LN L+++T+LQ+ + V M+ L   +P    L  +L+ ++  +E+V+ RRT Y
Sbjct: 307 RDVKPRVVLNNLFKHTALQTSYGVIMLCLVDGRPRVLNLGEMLRYYLRHQEDVIRRRTTY 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++D V+ +IR S   E AR  L+++               
Sbjct: 367 DLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQ--------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                       +LSE Q +AIL++RL RLTGL R  I  E   L  +IKE   IL+   
Sbjct: 412 -----------FHLSEEQAQAILDMRLQRLTGLERQKIDEEYAELVEKIKELRAILADEK 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++LG+I++ELL +K +    RRTRI  G  ++EDED I  E++ VT+SH GY+KR P+S+
Sbjct: 461 KILGVIREELLDIKAKYGDERRTRITAGEGEIEDEDLIPMEEVAVTLSHDGYIKRQPMSL 520

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y++QRRGG+G + +  ++EDFV  LFI S+H  +LFF++ G VY+ K + +P     A+G
Sbjct: 521 YKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKG 580

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N+L+++QGE+I+ ++P     S+    Y++ AT+ G +++  L +F  I R G +A
Sbjct: 581 TPIVNLLNVDQGEKISAVVPI---RSTDGGQYLIMATREGTIKKTPLDEFENIRRGGLVA 637

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + L   DE+++V       +++L T+ G  +RFP + +R   GR + GV+ + L  G
Sbjct: 638 ISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSM-GRGAAGVKAVDLQGG 693



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V+ +GFGKRT   ++R  +R GKGIR   V+     G++V++  V +++ +++++  
Sbjct: 708 VLVVTNRGFGKRTPITEYRHQSRGGKGIRTLHVTA--RTGSVVSLKMVRNDEDVMVITTT 765

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G  IR+ V+EI +  R T+GV + +  +DE V +V ++
Sbjct: 766 GIAIRMHVDEISVQGRNTQGVKLITLKEDEEVSTVAKV 803



 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 22/173 (12%)

Query: 745 DADYDERICYMKHMSA----QRRLISGDTEEITSLKND---------SSVEGNISEERCQ 791
           D +Y E +  +K + A    +++++    EE+  +K           ++ EG I +E   
Sbjct: 439 DEEYAELVEKIKELRAILADEKKILGVIREELLDIKAKYGDERRTRITAGEGEIEDE--- 495

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+  +T+S  G+ KR     ++   R G+GI A    + + +  L   F  + + 
Sbjct: 496 DLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHL---FITSSHH 552

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            ++  ++KG + R+   E+    RA KG   V + +  + E++ +V  IR ++
Sbjct: 553 YLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKISAVVPIRSTD 605


>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
 gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 846

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/913 (41%), Positives = 544/913 (59%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  IIS+D           +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTARIISTD-----------LQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 49

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGS+
Sbjct: 50  HELGLTADRPFRKCARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSI 109

Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTECRL   A   LL D+  +TVDF  NYDGS QEP+VL AR P +L+NG 
Sbjct: 110 DNDPPAAMRYTECRLTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGS 169

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VDG +A+I NP++    LM+ I  PDFPTG +I+G+ GI+ 
Sbjct: 170 SGIAVGMATNIPPHNLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIMGQEGIRE 229

Query: 240 AYATGRGSIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           AY TGRGSI +RGV+ +E    +    RE I++TE+PYQ NKAAM+EKIAELV EK++  
Sbjct: 230 AYTTGRGSITLRGVATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEG 289

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           IAD+RDESDR+G RVVIELKR A   V+LN LY+ T LQS F VNM+A+   +P   TL 
Sbjct: 290 IADIRDESDREGMRVVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGEPRTLTLR 349

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L+AF+ FR EV+ RRT+Y L KA +R H+L G  +A+  LD V+ +IR + +  TAR 
Sbjct: 350 DALQAFLDFRAEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARA 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL                            T+ LSE Q   IL+++L RLT L  + I+ 
Sbjct: 410 EL--------------------------QATLGLSEAQADGILQMQLRRLTALEAEKIQA 443

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL+ R R++ II +EL  +K    +PRR+R+     +++  D I  
Sbjct: 444 EHEDLVRQIADLRDILARRERVMQIISEELQQLKSRFASPRRSRLCLEDCELKVADLIEN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            + V+ ++  GY+KR+ L  ++ Q R  +G++G  ++D+D +   F   +H ++LFF+  
Sbjct: 504 RETVIFLTEQGYIKRMDLEEFQVQGRATRGKAGARIKDDDAIEQFFACRSHDTILFFTDR 563

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652
           G VY    + +P GS  ARG A++ +L + + ER+T+++P   F +DE      Y+V  T
Sbjct: 564 GMVYTLPAYEIPQGSRTARGSAIVQLLPITREERVTSMVPVSEFSDDE------YLVMLT 617

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++  LS F  +  +G IA+ L+  DE+  V      +D+++ T+ G C+RF    
Sbjct: 618 RAGYIKKTALSAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMCIRFRADD 677

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++   GR + GVR I+L  GD ++SM I+                M+A+R         
Sbjct: 678 EQLRPLGRATRGVRAITLNPGDDIVSMDIIFAESV-----------MAAER--------- 717

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                     EG          +L   ++L ++++G GKR++   FR  NR GKG+ AT 
Sbjct: 718 ----------EGE---------RLANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATK 758

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +  E   L A+  VN  D+I+LV+ +G ++R     I   SR   GV++     ++ +
Sbjct: 759 FRQ--ESDELAALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSI 816

Query: 892 VSVERIRESEIVD 904
           V V  +  S I D
Sbjct: 817 VGVTVVPASFIRD 829


>gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
 gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
          Length = 827

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/888 (41%), Positives = 537/888 (60%), Gaps = 87/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K A
Sbjct: 6   ILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GK+HPHG+ A+YD+L R+ QD+S+R  LI+GQGNFGS+DGD PAA RYTE R+
Sbjct: 66  RIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL
Sbjct: 126 KAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG +A+I+NPDI++  LM+ +  PDFPT  +I G  G+K AY TGRG +VIR  + 
Sbjct: 186 REVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIYGYEGVKQAYLTGRGKVVIRARAL 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT+
Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGMPRVLNLKQMMEYYIRHRNEIVLRRTQ 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  LM++              
Sbjct: 366 YDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEK-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q++AILE+RL RLTG+ R  I  E     + I E   IL++ 
Sbjct: 412 ------------FGLTEIQSKAILEMRLQRLTGMERKKIDMEYQETLLLIDELRSILANP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + + II++ELL VKD     RRT IV    D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 QKQMQIIREELLKVKDVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   + +DFV  +FI STH  +LFF++ G  Y  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVAGAQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAGRTAR 579

Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G++L NI+ L   E+I   +     DE      ++V AT +G V++  L +F +  R+G 
Sbjct: 580 GRSLANIMELQPAEKIRAYINIRNFDEPG----FIVMATGNGTVKKTGLDEFSRPRRNGI 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ ++  DE++       ++ I+L    G  VRFP S IR   GR ++GVRGI+L   +
Sbjct: 636 AAITIEENDELIDARLTDGDHQIILAKSSGYVVRFPESEIRSM-GRTAMGVRGITLDADE 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + ISM                                 +T+ + D++             
Sbjct: 695 KCISM---------------------------------VTTKRFDTT------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V++ GFGKR+   D+R++ R  +G+    +    + GA+V +  VND D +
Sbjct: 709 ------LLAVTDNGFGKRSRVEDYRLTKRGARGV--ITLKAHEKTGAMVGLLDVNDEDDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I++++ G + R  V++IR+  R T GV +      + + ++ R+ +S+
Sbjct: 761 IIITNNGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDIISALARVPKSD 808



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 101/217 (46%), Gaps = 18/217 (8%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +V  +  G VK+  L  +   RR G   + + + + D + D  +      ++   S G+
Sbjct: 609 FIVMATGNGTVKKTGLDEFSRPRRNGI--AAITIEENDELIDARLTDGDHQIILAKSSGY 666

Query: 598 VYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           V      R P    ++ G+  + +  ++L+  E+  +++     +++     ++  T +G
Sbjct: 667 VV-----RFPESEIRSMGRTAMGVRGITLDADEKCISMVTTKRFDTT-----LLAVTDNG 716

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R+++ D+    R  +  + L + ++   ++ +     E+D+++ T  G   R  +S 
Sbjct: 717 FGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVGLLDVNDEDDLIIITNNGIVNRQHVSD 776

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           IR   GRN+ GVR I L  GD + ++A V  +D + D
Sbjct: 777 IR-LTGRNTSGVRLIRLMAGDIISALARVPKSDEEID 812


>gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
          Length = 811

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/887 (40%), Positives = 543/887 (61%), Gaps = 91/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K A
Sbjct: 4   ISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE R+
Sbjct: 64  RIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARM 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP HNL
Sbjct: 124 SKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VDG + +IDNP+I    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG   
Sbjct: 184 GELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGKVK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +  +++ EIPYQ+NK+ ++E+IA LV+EK+I  I DLRDES+R+G RVVIELK
Sbjct: 244 IEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  +++ R +V+ RRT +
Sbjct: 304 KGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRTLF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++               
Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYA------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS  +
Sbjct: 411 -------------FTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSYDN 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++  I+KQELL VKD     RRT I E  +++  ED I  E+M++T ++ GY+KR+  + 
Sbjct: 458 KIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEANK 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y++Q RGGKG +G+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+RG
Sbjct: 518 YKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRG 577

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + + N+L + + E+I  I+    F +++       +VF TK G V++  L +F  IN  G
Sbjct: 578 RLISNLLRIGEEEKIRAIIKTRVFDKEKE------LVFVTKQGIVKKTSLEEFKNINTGG 631

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            IA+K    D+++ V      EN++ + T+ G  VRFP   +R   GRN++GV+GI L +
Sbjct: 632 LIAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+S  ++                                                  
Sbjct: 691 GDEVVSALLI-------------------------------------------------- 700

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K KE  ILT++E G+GKRT   ++   NR GKG+   ++    + G +V+V    D +
Sbjct: 701 --KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGV--INLRCNEKTGNIVSVLTALDEE 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++ ++  G +IR P+N I   SRA +GV+I   A DE+V S+ RI+
Sbjct: 757 ELVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803


>gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
 gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
          Length = 849

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/896 (41%), Positives = 537/896 (59%), Gaps = 92/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCA
Sbjct: 10  ISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IYDAL ++AQDW+ R  L++G GNFGS DGD  AA RYTE RL
Sbjct: 70  RIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN      +  +D +M+II+GPDFP GA ILG  GIK AY TGRG I +
Sbjct: 190 KEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHRGIKEAYRTGRGKIKV 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +IVVTE+PY VNKA +++KI ELV+ KR+  I D+RDES R+G RV
Sbjct: 250 RAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDESSREGIRV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+  +A+V+LNQLY++T LQ  F VNM+AL    P+   +  +L  ++  +E+VV 
Sbjct: 310 VIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVDGVPKILNISQMLGYYLKHQEDVVT 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+  L++R          
Sbjct: 370 RRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIER---------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AI+++RL  LTGL R+ +  E   L  +I     I
Sbjct: 420 ----------------FGLTEIQAQAIVDMRLRALTGLEREKLEAEYKELMDKISYLKAI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+IK ELL +  +    RRT +   + ++ DE+ I RE++V+T++ LGY+KR
Sbjct: 464 LADEKKLLGVIKDELLVISQKYGDERRTALGRDVDEVTDEELIERENIVITMTKLGYIKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P  +++AQ RGGKG  G+   DED++  + + +TH  ++FF++ G VY+ K + +P   
Sbjct: 524 MPEDIFKAQNRGGKGIRGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLKGYEIPEAG 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L  GE+IT ++P    +S  +  Y+  AT++G V++  +S++  + +
Sbjct: 584 RTARGVAIVNLLQLQAGEKITAVIPL---KSYEDGKYLFMATRNGMVKKTDISEYQNVRK 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    E+DI L TK G  +RF    +R   GR S+GV+GI L 
Sbjct: 641 TGLTAIVLRDNDELIEVKATNGEDDIFLITKKGMTIRFNEKNVRQ-TGRTSMGVKGIHLG 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VISM                   MS+Q                             
Sbjct: 700 KDDIVISM------------------QMSSQ----------------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + IL V+E G GKRT   +F + NR GKG++   ++  ++ G LV    V D 
Sbjct: 713 ------GEKILLVTENGMGKRTLISEFNVQNRGGKGVKCYKIT--DKTGDLVGAKIVTDE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVD 904
           + I++++ +G +IR     I    R T GV + +   D   +V S+  +++ E  D
Sbjct: 765 NDIMIITTEGIIIRTSCEGISTLGRVTSGVKVINLNYDNNVKVASMTEVQKEEFDD 820


>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 821

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/901 (42%), Positives = 542/901 (60%), Gaps = 85/901 (9%)

Query: 8   SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +D++   G I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ 
Sbjct: 2   ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  A
Sbjct: 62  PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRG
Sbjct: 182 ATNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQ
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R 
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+      
Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL++RL RLTGL R+ I  E   L   I++
Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  G
Sbjct: 456 LKAILASEARQRQIIKDELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +
Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575

Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  GS  +RG A++N+L L  GE +TT++     E    N+ +   T+ G V+R  + ++
Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHENVNLFMVTEFGVVKRTAIEEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +R     +R+   R + GVR
Sbjct: 633 RNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+   +                                  L++D S     
Sbjct: 692 GIKLKTGDVVVGAGV----------------------------------LESDES----- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  + T+SE+G+GKR  +  + +  R G G +   ++  ++ G +VAV 
Sbjct: 713 -----------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAVE 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI  
Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIES 819

Query: 905 E 905
           E
Sbjct: 820 E 820


>gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
 gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
          Length = 828

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/896 (42%), Positives = 560/896 (62%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  D L
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  +                                                 R 
Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q+     Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDE 905
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++ E   +DE
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSIDE 813


>gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365]
          Length = 891

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/896 (42%), Positives = 550/896 (61%), Gaps = 63/896 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T V+I  EM++S++ YA++VI+ RA+PD RDGLKPVHRRILF    +   WN+ Y+KCA
Sbjct: 7   VTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKCA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECR+
Sbjct: 67  RIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECRM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL DL K+TVD++PNYD    EP VL  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 127 ARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  +A++++PD+  + L EI+ GPDFPTG +I GR GI+ A+  GRG++VIRG + 
Sbjct: 187 GEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAVVIRGRTQ 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E    +R+ IVVTE+P+ VNK+  +E  A LVR+KRI  I+D+RDESDR+G RVV ELK
Sbjct: 247 FETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LN L++ T+LQ+ F+VNM+A+   +P+  +L   L+ F+  R  VV RR  +
Sbjct: 307 RDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRTVVRRRCLF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDLI 434
            L +AR+R  ++ GL +AV  +D V+ IIR S + + A+  LM +R        +     
Sbjct: 367 ELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERAGRP 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSS 493
            D    + + G ++LS  Q +AIL++RL RLTGL R+ +  E   L  EI + L+ IL  
Sbjct: 427 ADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYREL-WEITDYLEGILGD 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +L G+I  EL  ++D+   PRRT IV+   ++ DE  I  EDMVVT +  GYVKR  L
Sbjct: 486 DVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTAL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y AQ RGGKG  G    D+DFV D+F+ STH  +L F+++G VY++KV+ LP GS  +
Sbjct: 546 DEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRIS 605

Query: 614 RGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G+  +N++ +L   E +  ++P  E     ++L    AT+ G V++   + F +I  +G
Sbjct: 606 KGRPFVNVIEALQPDEYVVGMLPVKE---FTDDLSAFMATRMGTVKKTVAAAFSRIRVTG 662

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ +D  DE++ V     + D+LL TK GQ +RF    +R   GR + GVRGI LA G
Sbjct: 663 IKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPM-GREARGVRGIGLAGG 721

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M++         ER C                                       
Sbjct: 722 DAVVGMSVF--------ERDC--------------------------------------- 734

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV E G+GKRT    +    R GKG+     ++ N  G +  V  V ++D 
Sbjct: 735 ----EDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERN--GPVSGVRLVGEDDH 788

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +I++S  G LIR+ V +I + SRAT+GV +      E+V S+ER+ E +  D+A+S
Sbjct: 789 VIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLERLAEPD--DDADS 842


>gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
 gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
          Length = 914

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/907 (41%), Positives = 543/907 (59%), Gaps = 71/907 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  + +    E +    ++I +E++ SYLTYA++VI+ RA+PD RDGLKP  RRIL  M
Sbjct: 1   MSIAVATPPPSEPREPLPLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+       KCA I GE M +YHPHG+ +IY  LARMAQ W++R LL+ GQGNFGS+
Sbjct: 61  LDLGLTPGGSTSKCAGIVGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G PPAA RYTE +L   A  +LDD+  DTVDF+P+YD   QEP VL AR+PN+LVNG G
Sbjct: 121 HGLPPAAMRYTEAKLSPVAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGEV D  +A+IDNP ID + L+E + GPDFPTG VI GR GI+ A
Sbjct: 181 GIAVGMATSIPPHNLGEVCDALIALIDNPAIDFEDLIEKLPGPDFPTGGVICGRMGIREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R    +E+T   R QIV TEIPYQ+ K  +L+K+ +LV   RI  IAD+ 
Sbjct: 241 YLTGRGRIVLRAKHVVEETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVV 300

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DESD RQ  R+V++LKR    +VILNQLY+Y+ LQ  F V M+AL   +P+  TL  +LK
Sbjct: 301 DESDRRQPVRIVVKLKRNEDPNVILNQLYQYSPLQDTFGVIMLALVDGRPKTLTLRELLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  V+ RRT +LL + R RAHV+ GL IA+  +DE++ IIR SPNP  AR  LM 
Sbjct: 361 IYLDHRANVIRRRTAFLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMG 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +          D++  +     +  T  L+  Q  AIL +RL +LTGL  D +  E   
Sbjct: 421 MAVGP-------DVMRRALNDPEAQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRE 473

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED-M 538
           L   I +  DIL+   R+  IIK +L  +K +   PRRT I +  L   D++ ++RE+ M
Sbjct: 474 LRAAIADAEDILAREVRVREIIKADLEELKRKYADPRRTVISDEELGSYDKEALIREEYM 533

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT++  GY+KR+P S YRAQ RGG+G++    ++ DF+  +F+  TH  +LFF+  G +
Sbjct: 534 VVTITDGGYIKRLPPSTYRAQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLI 593

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           +  KV+ +PI    A G+A++N+L L +GERIT ++P   FP++E      ++  AT+ G
Sbjct: 594 HWLKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVRRFPDNE------FLFMATRRG 647

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LS + +  R G IA+ L+  D++++V      + ++L+T+ G  +RF  S +R 
Sbjct: 648 TVKKTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRP 707

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI L   DQV+ M                         +++   ++  SL
Sbjct: 708 M-GRPACGVRGIRLEGDDQVVGM-------------------------VVANGPDDPASL 741

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                    LTV   GFGKRT   ++R  +R GKG+   D+   
Sbjct: 742 -------------------------LTVCSNGFGKRTRLSEYRAQHRGGKGL--IDIKTT 774

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G +VA+  V D D+++L +++G LIR  ++E R   R T+GV +    + +RVV++ 
Sbjct: 775 ERNGPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRVVALA 834

Query: 896 RIRESEI 902
           ++ ESE+
Sbjct: 835 KLPESEL 841



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 20/212 (9%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VK+ PLS Y   +RGG    G+   D+           H  +   + +   ++E   R
Sbjct: 647 GTVKKTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVR 706

Query: 606 LPIGSPQA--RGKALINILSLNQGERIT--TIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            P+G P    RG      + L   +++    +   P+D +S     ++    +G  +R +
Sbjct: 707 -PMGRPACGVRG------IRLEGDDQVVGMVVANGPDDPAS-----LLTVCSNGFGKRTR 754

Query: 662 LSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           LS++   +R GK  I +K   R+  ++++   T  ++++LTT+ G  +R  +S  R   G
Sbjct: 755 LSEYRAQHRGGKGLIDIKTTERNGPVVAIAKVTDADEVMLTTERGILIRTGLSETRDI-G 813

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           RN+ GVR I + +GD+V+++A +  ++   D+
Sbjct: 814 RNTQGVRLIRVDEGDRVVALAKLPESELSQDQ 845


>gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 809

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/894 (40%), Positives = 560/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EEFDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  +++V+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLLDMLNYYIEHQKDVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L++R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFG------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 415 -------------------FTEVQAQAILDMRLQRLTGLERQKIEEELAELLKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYV 548
           +L++ + +  IIK+E+L +K++    RRT+I++   +  +E+ +++E D V+T++H GY+
Sbjct: 456 VLANEAMVKEIIKKEILEIKEKYKDERRTKIIQDEQEDFEEEELIQEQDTVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGGKG +G+  R+EDFV ++F+ +TH  +LFF+  G  Y+ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGKGITGISTREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G A++N++ + + E+IT  M   +    +   +++  TK+G +++  LS+F   
Sbjct: 576 ASRQAKGTAIVNLIQIGKDEKITACMTVKD----FKEGFLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV  GR++ GV+G++
Sbjct: 632 TKAGKKAITLAEDDCLIDVKLTSGNDEMVLVSSGGYCVVFNENDVRVM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+ M     +D  Y   +C  ++   +R     D EE                 
Sbjct: 691 LEDGDFVVGMEKA--SDGKY--LLCVTENGFGKR----SDIEE----------------- 725

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                       +R + R  KG+    V++  + G +V +  VN
Sbjct: 726 ----------------------------YRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ ++++ +  R T+GV +     D  +V S+ RI+  +
Sbjct: 756 DEDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDSDSIKVSSIARIKAEQ 809


>gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 837

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/881 (41%), Positives = 544/881 (61%), Gaps = 88/881 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K ARI GE
Sbjct: 9   IEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL++G GNFGS+DGD  AA RYTE R+ + ++
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEARMARISN 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+DD+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDNP++    LME I+GPDFPTG +I G+ GI++AY TGRG + +RG   IE+  
Sbjct: 189 GILALIDNPELTPLNLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGKVEIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I++ EIPYQ+NKA ++E+IA+LV++KR+  I DLRDESDR G RVVIE+K+G   
Sbjct: 249 NGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           ++ILN+LY+YT LQ+ F + M+AL    P+   L  IL+ ++  R EVV RRTK+ L+KA
Sbjct: 309 ELILNKLYKYTELQNTFGIIMLALVNNAPKVLNLKEILQEYLKHRFEVVTRRTKFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ IIR S +   AR  L+++                    
Sbjct: 369 EKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    S+VQ RAIL+++L RLTGL R  I  E   +   I E  +ILS  S++  I
Sbjct: 411 --------FSDVQARAILDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSHDSKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+ELL +K++ +  RRT I    +++  ED I  E++++T+++ GYVKR+ +S Y+AQ+
Sbjct: 463 IKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQK 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG +     ++DFV  +   S   +++ F++ G V+  KV+ +P  S Q+RGK + N
Sbjct: 523 RGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSN 582

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           I+ + + E+I  ++    D S  N   VVF TK G +++  L +F  IN SG  A+KL  
Sbjct: 583 IIRIREDEKIRAVIK-TRDFSKDNE--VVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKE 639

Query: 681 RDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D+I+ V   E   QE  + + TK G  +RF    +R   GR+++GV+ I+L  GD ++S
Sbjct: 640 DDDIIYVGLIEKIDQEQ-VFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRPGDSIVS 697

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   D                                                    
Sbjct: 698 ALLIKDEDGS-------------------------------------------------- 707

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILTV+E G+GKRT   ++ +  RSGKG+   ++    + GA+V+V PV + ++++ ++
Sbjct: 708 --ILTVTENGYGKRTRIDEYPLQARSGKGV--INIRCNAKTGAVVSVLPVTEGEELMAIT 763

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             G +IR+P++ I +  RAT+GV+I      E+VVS+ R++
Sbjct: 764 SSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVQ 804



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 80/160 (50%), Gaps = 19/160 (11%)

Query: 756 KHMSAQRRLISGDT-------EEITSLK---ND---SSVEGNISEERCQELKLKEQFILT 802
           K+++  R ++S D+       EE+  LK   ND   + +E    E   ++L   E  ILT
Sbjct: 444 KYIAELREILSHDSKIYEIIKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILT 503

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++ KG+ KR     ++   R GKG+ + +     E   + ++   ++ D +++ +++G +
Sbjct: 504 LTNKGYVKRMEVSKYKAQKRGGKGVASQNTI---EDDFVESIESASNLDTLMIFTNQGRV 560

Query: 863 IRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
             + V EI   S+ ++G +   I    +DE++ +V + R+
Sbjct: 561 FNIKVYEIPETSKQSRGKLMSNIIRIREDEKIRAVIKTRD 600


>gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
 gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 884

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/893 (42%), Positives = 544/893 (60%), Gaps = 53/893 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL    +  +L D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+VDG VAVI NP+I    LM  I GPDFPTGA ILGR+GI+ AY TGRGSI +R
Sbjct: 185 PHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMR 244

Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE    +   DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR+G
Sbjct: 245 GVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A   V+LN LY+ T LQ+ F  NM+AL   KPE  TL   L  F+ FR  
Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGKPELLTLKRYLHVFLDFRIH 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y   KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL++R       
Sbjct: 365 TIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AIL+++L RLT L    I  E   L  +I + 
Sbjct: 418 -------------------FGLSEPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L I++QE + +K+   TPRRT I     ++ED D I  E  ++ ++  GY
Sbjct: 459 NDILNRRERILEIVEQEAIQIKERHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D V        H S+LFF+  G  Y  K +++P
Sbjct: 519 IKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           IGS  ARG  ++ +L + + E+IT+++   E     N+ Y+V  TK G +++  LS F  
Sbjct: 579 IGSRIARGVPIVQMLPIPRDEKITSLVAVGE---FTNDEYLVMLTKGGYIKKTALSAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  DE+  V +   ++ I++ ++LG  + F     ++   GR + GV+ 
Sbjct: 636 IRSNGLIAISLNEGDELRWVRSARVDDSIIIGSRLGMAIHFHTDDKQLRPLGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++I M I+                + A    + G+  EI   +N ++VE    
Sbjct: 696 MKLKPNDELIGMDIL-------------PSFIVATIPQLGGEEPEIEEEENTTAVEDVED 742

Query: 787 EERCQELKLKE-----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            +  +EL   E       IL ++ +G+GKR     FR+ NR+GKGI AT          +
Sbjct: 743 MDSSEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCV 802

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           VA+  V++ D+++L++ +G +IR  ++ I   SR   GV +    K++ + +V
Sbjct: 803 VALQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAV 855


>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 842

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/889 (41%), Positives = 549/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI M ++                          D E++                
Sbjct: 693 LREGDEVIGMEVL-------------------------EDNEKV---------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 712 ------------LIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR  ++ +    R+  GV +    ++E+V +V ++
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKV 806


>gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
 gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A
 gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
          Length = 828

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                          D +E+                  
Sbjct: 693 EDDRVVGASRIR-------------------------DNQEV------------------ 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 710 ----------LVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  V  I    RAT GV I     D ++V+
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R +E   K  F  T  ++G  KRT   +F  +N    G+RA    K+ E   L+ V   +
Sbjct: 602 RKEETAGKSFFFTT--KQGIVKRTEVSEF--NNIRQNGLRAL---KLKEGDQLINVLLTS 654

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             D II+ +  G  +R     IR   R+  GV      +D+RVV   RIR+++ V
Sbjct: 655 GQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709


>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
 gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
          Length = 842

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/889 (42%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M +                                  L++D  V       
Sbjct: 693 LREDDEVIGMEV----------------------------------LEDDEKV------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
 gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
          Length = 876

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/908 (40%), Positives = 541/908 (59%), Gaps = 95/908 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +++D++    I  V +  +M++SY+ YA++VI  RA+PD+RDG+KPV RRIL+ M+++  
Sbjct: 1   MATDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNN 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + KCARI G+ MGKYHPHG+++IY A+  MAQDW++R  L++G GNFGSVDGD  
Sbjct: 61  GPDKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K +  ++ DL KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           MATNIPTHNL EV+   V +I+N      D +LD +M+I++GPDFPTG  ILG  GI+ A
Sbjct: 181 MATNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTRGIEEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +RG+S IE     + +I++TE+PY VNKA ++EKIAELVR+K+I  I  + 
Sbjct: 241 YRTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGIS 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S R+G R+VI+++R A+A+VILN+LY++T LQ  F V M+AL   +P+   L+ IL+ 
Sbjct: 301 DHSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVDNQPKVLNLLQILEY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEVV RRT+Y LNKA++RAH+L GL  A+  +DEV+  IR S     A+  L+ +
Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +E Q +AI+++RL  LTGL RD ++ E + L
Sbjct: 421 --------------------------FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE   IL+ R  LLG+I+ E+  + D+    RRTRI   + D+  ED I  ++ V+
Sbjct: 455 QKKIKEYQAILADRKVLLGVIRDEIQIISDKFGDERRTRIGHDVYDITTEDLIPNDNNVL 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR+    + AQ RGGKG  G    + D++ DLF+  +H  ++FF++LG  Y 
Sbjct: 515 TMSHLGYIKRMSPENFHAQNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYT 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG A+IN+L L  GE+IT I+P  E +    N Y+  ATK G V++ 
Sbjct: 575 LKAYEIPEASRTARGTAIINLLQLMPGEKITAIIPVSEFKE---NQYLFMATKKGMVKKT 631

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +  F  + +SG  A+ L   D+++ V+    + D+ L T  G  +RF    +R   GR 
Sbjct: 632 PVPAFRNMRKSGLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRA-TGRG 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GVRGI L   D+VI M                   + AQ +                 
Sbjct: 691 SMGVRGIWLDGEDEVIGM------------------QLQAQGK----------------- 715

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IG 839
                             ++L  SE G GKRT   +FRI  R GKGI      K NE  G
Sbjct: 716 ------------------YLLFSSENGIGKRTLFEEFRIQKRGGKGILCY---KPNERTG 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV V  VND D+++L++  G +IR+ V+++ +  R+  GV +      + V S+ ++R+
Sbjct: 755 KLVGVKAVNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLMDVM--DSVASIAKVRK 812

Query: 900 SEIVDEAE 907
            +  DE E
Sbjct: 813 DD-SDEGE 819


>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
 gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
          Length = 821

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/891 (42%), Positives = 530/891 (59%), Gaps = 87/891 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE++   +  V +  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N
Sbjct: 2   DEQQFDKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG++++YDA  R+AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF PNYDGS QEP VL A+ PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG V +ID+PD+ LD LM  I+GPDFPTGA ILGR GI  AY+TGRGS+
Sbjct: 182 NIPPHNLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKILGREGILKAYSTGRGSV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE  S  + +IV+TEIPYQVNKA ++E IA+L R K I  I  LRDESDR+G 
Sbjct: 242 KMRSCAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+   + D+ILN+LY++T LQ  F V M+AL    P   TL  +L  ++  R+ V
Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGHPRVLTLREVLAYYLEHRKVV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+KA  RAH+L GL IA+ ++DEV++ IR S   E A+  LM +        
Sbjct: 362 VTRRCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q+ AIL++RL RLTGL RD I+ E   L   I    
Sbjct: 414 ------------------FDLSEKQSIAILDMRLRRLTGLERDKIQEEYAELEKTIDYLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +L+GII+ ELL  K +    RRT+I     ++  ED I  E MV+T++  GY+
Sbjct: 456 SVLADEHKLMGIIRDELLETKKKYADKRRTQIEADTSELNVEDLIPNERMVLTLTRRGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP- 607
           KR+  +VY  Q +GG+G  G+  +DED V  L   S H +VLFF++ G VY+ K + +P 
Sbjct: 516 KRINANVYHTQNKGGRGIKGMATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPE 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G A IN+L L+QGE++  ++   + +   N   +  AT+ G V++  L +F  
Sbjct: 576 ANSRNSKGIAAINLLPLSQGEKVNALIDVDQVDPQAN---LFMATERGLVKKTSLQEFSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G IA+ L   D +  V     + +I+L TK G  + F  + +R   GRN+ GVRGI
Sbjct: 633 VRRNGLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPM-GRNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +LA+ D VI   I                                  L +DS V      
Sbjct: 692 TLAEDDMVIGADI----------------------------------LADDSQV------ 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        LTVSE+GFGKR +   +++  R GKG++   ++   + G +V V  V
Sbjct: 712 -------------LTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITP--KTGVIVGVEVV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERI 897
            +  ++IL++  G +IR  +  I +   R T GV I    ++++V +++ I
Sbjct: 757 RNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTI 807


>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988]
 gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
 gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
 gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161]
 gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
 gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
 gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
 gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
          Length = 842

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/889 (42%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M +                                  L++D  V       
Sbjct: 693 LREDDEVIGMEV----------------------------------LEDDEKV------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806


>gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27]
 gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27]
          Length = 805

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/882 (42%), Positives = 530/882 (60%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDAL RMAQ W+LR  LI+GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ KDTVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+I+NP I L+ +M  + GPDFPTG   L + GIK AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGK-LSKKGIKEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+  G R  +VVTEIPYQVNKA+++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 VEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LNQLY++T+LQ+ F+VN++A+   +P+  +L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR  LM+R               
Sbjct: 362 ELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   +
Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL  +K +LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLES 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED  T +F+   H  +L F++ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671
             + ++L L + E +  ++       S   L    ++VFAT+ G V+R  L ++  + ++
Sbjct: 576 VHVKSLLPLAEDEEVAALL-------SVRGLDQEGHLVFATERGLVKRTALKEYQNLGQA 628

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA++L   D ++ V     E++ +L T+ GQ +RFP+  +R   GR++ GV G+   K
Sbjct: 629 GLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKK 687

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            +  +   +V+      D                                          
Sbjct: 688 PEDRVVSLVVVKPGEMVD------------------------------------------ 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L+VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   +
Sbjct: 706 --------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVS--TKVGRLAALLKVRGGE 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++++S +G  IR PV EIR  SRAT GV + +  +D+ V S
Sbjct: 756 DLLVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVAS 797


>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 838

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/867 (42%), Positives = 536/867 (61%), Gaps = 54/867 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRLQ  A   LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HNLGE+VDG VA+I NP+I 
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KTSGDREQIVV 268
              LM+ I  PDFPTG  ILGR+GIK+AY TGRGSI +RGV+ +E    +   D+E I+V
Sbjct: 181 EKELMQYIPAPDFPTGGQILGRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAIIV 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAE+V +KRI  I+D+RDESDR+G RVVIELKR A   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQS F  NM+AL G +P+  T+   L+ F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQSNFGANMLALVGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+ NLD V+ +IR + +  TA+ +L+++                            
Sbjct: 361 GLLIALDNLDAVIAVIRAANDTATAKSQLIEQ--------------------------FG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE Q  AIL+++L RLT L    I+ E   L + I +  DIL++RSR+L II+ E L +
Sbjct: 395 LSEPQADAILQMQLRRLTALEAQKIQAEHEELQVRIADLQDILANRSRILEIIETEALQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K   DTPRRT I E   +++D D I  E  V+ V+  GY+KR+P+  + AQ R  +G++ 
Sbjct: 455 KTTHDTPRRTAIQEVEGELDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAA 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             M+++D V        H S+LFFS  G VY  + +++P  S  ARG  ++ +L +   E
Sbjct: 515 ARMKEDDGVEHFLTCCDHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+++P  E     +++Y+V  T+ G +++  L  F  I  +G IA+ L   D++  V 
Sbjct: 575 KITSVVPVSE---FTDDVYLVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
            C  E+ I++ +  G  + F     ++   GR + GV+ + L   D++ISM I       
Sbjct: 632 LCRAEDSIIIGSSQGMAIHFKADHDQLRPLGRATRGVKAMKLRSKDELISMDI------- 684

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +     +R + + ++EE+ + ++D+S E  ++ E   E   +  ++L V+  G
Sbjct: 685 -------LPAQVVERLIATANSEEVET-EDDTSDE--VNGEEVHETAGQGPWVLVVTTGG 734

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
            GKR     FR+ NR+G G+    +   ++   L A+  VN+ D++++V+ +G +IR  +
Sbjct: 735 LGKRVPVSQFRLQNRAGMGL--VTIKFRHKKDKLAALRVVNEGDELMMVTMRGIIIRQAL 792

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894
           + I   SR   G+ +    +++ + +V
Sbjct: 793 DAISPQSRMATGIRVQRLDEEDAIAAV 819


>gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2]
 gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 815

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/887 (42%), Positives = 543/887 (61%), Gaps = 86/887 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M  +G   N+ Y K AR+
Sbjct: 4   TISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMAR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
                L D+ K TVDFRPNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNL E
Sbjct: 124 LCSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DGCV ++DNP   ++ +M  ++GPDFPTG ++ G  G+ +AY TGRGSI IRGV  IE
Sbjct: 184 LIDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGGQGLYDAYTTGRGSIKIRGVVEIE 243

Query: 258 KTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +T  G +E IV+ EIPY +NK+ ++EKIA LV EK+I  +ADLRDESDR+G R+V++LKR
Sbjct: 244 ETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLKR 303

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           GA AD+I+N LY+YT L++ F +NM+A+ G +P    L  +L  F+  R EVV+RRTK+ 
Sbjct: 304 GAIADIIINALYKYTPLETSFGINMMAVVGKRPMLLNLKSVLDYFLDHRREVVIRRTKFD 363

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+K   R H+L GL IA+ N+DEVV++IR S +P+ A+  LM R                
Sbjct: 364 LDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMAR---------------- 407

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AIL++RL +LTGL  D +  EL  L  +I+    IL++   
Sbjct: 408 ----------FSLSEIQAKAILDMRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDV 457

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  +I+ EL  +K+   TPRR+ ++    D  D ED I  E+ VVT+S  GY+KR PLS 
Sbjct: 458 LKSVIRDELKEIKENYSTPRRSELLTANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLSN 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y AQRRGGKG SGV   D DF+    + + H  ++ F++LG ++K K  ++P GS  A+G
Sbjct: 518 YTAQRRGGKGISGVQTGDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N+L L++ E ITT +   E +   ++ + +F TK G ++R+ +  +     +G  A
Sbjct: 578 GHVANLLPLDKDECITTALSLREFD---DDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     + D +L T+ G  +RF I+  R   GR + GV+G++L   D+V
Sbjct: 635 VNLRDGDELMMVREIEPDVDCILVTRDGSAIRFNINDARPL-GRTTAGVKGVALRGDDEV 693

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++               C          +++GD E                         
Sbjct: 694 VA---------------C----------VVTGDPE------------------------- 703

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           ++Q +LTVS  GFGKRT    +R  +R GKGI   ++   N+ G +V    VN++D +IL
Sbjct: 704 RDQ-LLTVSAGGFGKRTGIDQYRQQSRGGKGI--LNMRLTNKTGKVVGARMVNESDDVIL 760

Query: 856 VSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++    +IR+ V+E+ +   RAT+GV +     +  V+  E + E E
Sbjct: 761 LTSANKIIRMSVSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGE 807


>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 821

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/901 (42%), Positives = 541/901 (60%), Gaps = 85/901 (9%)

Query: 8   SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +D++   G I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ 
Sbjct: 2   ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NK Y K ARI G+V+GKYHPHG+ ++YDA  R+AQD++ R LL++G GNFGS+DGD  A
Sbjct: 62  PNKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRG
Sbjct: 182 ATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQ
Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R 
Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+      
Sbjct: 362 NVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL++RL RLTGL R+ I +E   L   I++
Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIED 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  G
Sbjct: 456 LKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +
Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575

Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  GS  +RG A++N+L L  GE +TT++     E    N+ +   T+ G V+R  + ++
Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHENVNLFMVTEFGVVKRTAIEEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +R     +R+   R + GVR
Sbjct: 633 RNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+   +                                  L++D S     
Sbjct: 692 GIKLKTGDVVVGAGV----------------------------------LESDES----- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  + T+SE+G+GKR  +  + +  R G G +   ++  ++ G +VAV 
Sbjct: 713 -----------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAVE 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI  
Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIES 819

Query: 905 E 905
           E
Sbjct: 820 E 820


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/894 (41%), Positives = 562/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +    +   Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R   GR + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M     +D  Y   +C  ++   +R  I                      E
Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++ K   + +LT              +++++++G+               +V +  VN
Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKTGR---------------IVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ V++I +  R T+GV +     D  +V S+ RIR +E
Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVNE 809


>gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 871

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/889 (40%), Positives = 535/889 (60%), Gaps = 83/889 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 SKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNPDID + LM+ I+ PDFPTGA I G  G+K+AY TGRG IV+R  + 
Sbjct: 192 AEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIYGLQGVKDAYETGRGRIVLRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IV++EIPY VNKA ++E IA+LV+E R+  I++  DES RQG R+V+++K
Sbjct: 252 IE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+L++ T LQS FSVN +AL   +P   TL   +K FV  R +V +RRTKY
Sbjct: 311 RDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRHDVTIRRTKY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV+IIR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  + +  E   L   I     IL    
Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIARLQLILDDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++    RRT I+    +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 465 ECKRVMKLELEEVKEKFGDVRRTEIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +  Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +P G   ++G
Sbjct: 525 FHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDKTSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+++  + +   +      D     N Y+VFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ +   DE++ V     +N +++  + G+ V F  + +R   GR + GVRG+ L  GD
Sbjct: 645 NAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTM-GRTATGVRGMRLDGGD 703

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +   IV+                                  ND   E           
Sbjct: 704 DAVVGMIVV----------------------------------NDPETE----------- 718

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V D++ +
Sbjct: 719 -----TVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESE 901
           ++++  G  IR+ V   R+  RAT+GV + + +K   V+ SV +++ S+
Sbjct: 772 MIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSD 820


>gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
 gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
          Length = 843

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/894 (41%), Positives = 555/894 (62%), Gaps = 88/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K A
Sbjct: 4   INNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y  + RMAQD++ R  LI G GNFGS+DGD  AA RYTE R+
Sbjct: 64  RIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEARM 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL+D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNL
Sbjct: 124 AKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDG +A+IDNP++    LME I+GPDFPTG +I G  GIK+AY TGRG + +RG   
Sbjct: 184 GEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGIIDGDKGIKDAYMTGRGKVRVRGKIE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +  I++ EIPYQ+NKA ++EKIAELV++K+IV I+DLRDESDR G RVVIELK
Sbjct: 244 IEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G   ++ILN+LY+YT LQS F + M+AL    P    L  I++ ++  R EV+ RRT++
Sbjct: 304 KGEEPELILNKLYKYTDLQSTFGIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRTQF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L G  IA+ N+D ++ ++R + +   AR +L+++               
Sbjct: 364 NLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYG------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +++Q RAIL+++L RLTGL RD +  E   +   I E  +IL++ S
Sbjct: 411 -------------FTDIQARAILDMKLQRLTGLERDKVEAEYQEIEKYISELREILANDS 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++  I+K EL  +KD+ D  RRT I +   ++  ED I  E++++T ++ GYVKR+ LS 
Sbjct: 458 KIYEIMKTELQELKDKYDDDRRTVIEKERKEINPEDLIKDEEVILTFTNKGYVKRMELSK 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQ+RGG+G +     ++DFV ++       +++ F++ G VY  KV+ +P  S Q+RG
Sbjct: 518 YKAQKRGGRGVASQNTVEDDFVENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + + NI++L   E+I  I+    D S+ N   V+F TK G V++  LS+F  IN SG  A
Sbjct: 578 RLIGNIINLKTDEKIRAIIK-TRDFSNENE--VIFVTKDGTVKKTNLSEFKNINSSGLKA 634

Query: 676 MKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +KL   D+I+ V   E    E  +L+ T+ G  +RF    +R   GR+++GV+G++L +G
Sbjct: 635 IKLKENDDIIYVGLIEDIVNEQ-LLIATQAGYSIRFSCEELRA-TGRDTMGVKGLTLREG 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+S  +                               I  ++N S             
Sbjct: 693 DTVVSALL-------------------------------IKDIENSS------------- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILT++E G+GKRT   ++ + +R GKG+     S   + G++V+V  V+ +++
Sbjct: 709 -------ILTITENGYGKRTKIDEYPLQSRIGKGVINLRCSA--KTGSVVSVLSVSTDEE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905
           ++ ++  G +IR+ V++I +  RAT+GV+I     KDE+VVS+ R++  E  DE
Sbjct: 760 LMAITSSGVVIRIAVDDIVLYGRATQGVIIMKVHGKDEKVVSITRVKSEENEDE 813


>gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
 gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
          Length = 818

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/885 (42%), Positives = 555/885 (62%), Gaps = 89/885 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G  ++N+L L++GE + TI+     +D+ S    Y+ F T+ G V+R   S+F  I
Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTIISQSGHDDKES----YLFFVTRQGVVKRTLESEFSNI 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE+++V      NDI++ TK G  VRF  SA+R  + R++ GVRG++
Sbjct: 632 RQNGLKALNLKDGDELINVIRTNGNNDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+V+                       A R  IS D E                  
Sbjct: 691 LREGDEVV----------------------GASR--ISDDQE------------------ 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN
Sbjct: 709 -----------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLATVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++ I++++D G +IR  V  I    RAT GV I    +D ++++
Sbjct: 756 GDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQDAKLMT 800


>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
 gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
          Length = 837

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/729 (47%), Positives = 487/729 (66%), Gaps = 34/729 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I++EM+ S+L YA++VI+ RA+PD+RDG+KPVHRRIL+ M  +G+  +K Y K A
Sbjct: 9   VSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL D+ KDT+D++ NYDG+ +EPVV  AR+PN+LVNG  GIAVGMATNIP H+L
Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIPPHHL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           GE +D  +A+  NPDI +D +ME  + GPDFPT   ILGR+GI+ AY TG+GSI IR   
Sbjct: 189 GETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQILGRSGIRKAYETGKGSITIRAKL 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE+   D+E I+VTE+PYQVNKA ++EKIAELVR+K++  I DLRDESDR G R+VIEL
Sbjct: 249 NIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRIVIEL 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R A+A+V+LN LY++TSLQ+ F +NM+AL   +P    +   L  ++  ++ ++ RRT+
Sbjct: 309 RRDANANVVLNNLYKHTSLQTTFGINMLALVDGQPRVLNIKQCLSYYLEHQKVIIKRRTQ 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM+R              
Sbjct: 369 FELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMER-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL R+ I +E   L   I+E   IL+  
Sbjct: 415 ------------FKLSEKQAQAILDMRLQRLTGLEREKIEDEYKELQALIEELKAILADE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L II++EL  +K++    RRT IV G     EDED I  E++V+T++H GY+KR+P 
Sbjct: 463 EKVLEIIREELTEIKEKYKEDRRTEIVAGGAGFFEDEDLIPEENIVITLTHQGYIKRLPA 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VYK K + +P  S  A
Sbjct: 523 STYRTQKRGGRGIQGMGTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTA 582

Query: 614 RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  +IN+L + +GE +  ++   + DE +    Y+ F TKHG  +R  L  F  I + G
Sbjct: 583 KGIPIINLLQVEKGEWVNAVISVNQFDEEA----YLFFTTKHGIAKRTSLEKFRNIRKGG 638

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++SV     + ++++ TK G  +RF  + IR   GR + GV+GISL   
Sbjct: 639 LIAVGLREEDELISVRLTDGQKEMMIATKNGYLIRFEETQIRSM-GRTAAGVKGISLRGD 697

Query: 733 DQVISMAIV 741
           D V+SM I+
Sbjct: 698 DVVVSMEII 706


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/894 (40%), Positives = 565/894 (63%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++E++
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+QR         
Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +++Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTDIQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R++DFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +    +   Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV  GR++ GV+G++
Sbjct: 632 TRAGKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M     +D  Y   +C  ++   +R  I                      E
Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++ K   + +LT              +R+++++GK               +V +  VN
Sbjct: 725 EYRKTKRGAKGVLT--------------YRVTDKTGK---------------IVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           D D+I++ S +G  IR+ ++++ +  R T+GV +     +D +V S+ RI+  E
Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIKVSSIARIKAEE 809


>gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 817

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/900 (41%), Positives = 551/900 (61%), Gaps = 88/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +  +KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+L II++EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S   + Y+ F T+ G V+R  ++DF  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVEQDHSQ--DSYLFFTTRLGVVKRTSVADFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +V    +D DE +   +    +R L S                        
Sbjct: 693 DGDQVVGAGVV----SDNDEVLVITEKGYGKRTLAS------------------------ 724

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                                    ++    R GKGI+  ++++ N  G L  +  VN  
Sbjct: 725 -------------------------EYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V   +VE   + E+ DE E
Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 817


>gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 818

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/883 (42%), Positives = 554/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   +     N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTII--SQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      +DI++ TK G  VRF  SA+R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDGDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+                       A R  IS D E                    
Sbjct: 693 EGDEVV----------------------GASR--ISDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN +
Sbjct: 709 ---------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLATVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I++++D G +IR  V  I    RAT GV I    +D ++++
Sbjct: 758 EDIMVITDTGVIIRTNVASISQTGRATLGVKIMRLDQDAKIMT 800


>gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 818

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/896 (40%), Positives = 542/896 (60%), Gaps = 97/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF+PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN      +  ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     +  I+VTE+PY VNKA ++EKIA+LV+EK+I  I  L DES R+G R+
Sbjct: 249 RAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFR 365
            IEL+R  +A+VILNQLY++T LQ  F V M+A+     +  +P+   L+ +L  ++  +
Sbjct: 309 NIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDYYLKHQ 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+  LM R     
Sbjct: 369 EDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMAR----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++ Q +AI+++RL  LTGL R+ +  E   L   I 
Sbjct: 424 ---------------------FELTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKRIG 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E   IL+    LLG+IK+E+  + D+    R+T I     D   ED I  E++V+T++ L
Sbjct: 463 ELKAILADEKLLLGVIKKEITEISDKYGDDRKTSIGFDEFDFTVEDLIPEENVVITMTRL 522

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    +++Q RGGKG  G+   DED + +LF+ STH  ++FF++LG VY+ K + 
Sbjct: 523 GYIKRMTPDNFKSQNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKAYE 582

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSD 664
           +P     ARG A+IN+L L   E+IT ++P  E    +N + Y+  ATK G V++  ++D
Sbjct: 583 IPEAGRTARGTAIINLLQLAPEEKITAVIPIRE----YNEDHYLFMATKKGLVKKTPITD 638

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  + ++G  A+ L   DE++ V+      DILL T  GQC+RF  + +R   GR S+GV
Sbjct: 639 YANVRKTGLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRS-TGRVSMGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            GI+L  GD+V+ M +                                            
Sbjct: 698 IGINLMDGDEVVGMQL-------------------------------------------- 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                CQ      +++L VSEKG GK T+  +F++ NR GKG++   +  + + G ++A 
Sbjct: 714 ----DCQ-----GEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKI--LEKTGNVIAA 762

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             VN +  I++++ +G +I++P ++I + +R T GV + +  KD +V S+ ++RES
Sbjct: 763 KAVNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASITKVRES 818


>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 864

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/918 (41%), Positives = 552/918 (60%), Gaps = 76/918 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E  ++ I +  + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   SQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTP 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGS+D DPPAA
Sbjct: 64  DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAA 123

Query: 128 ERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL+      LL D+ ++TVDF  N+DGS QEP+V+ AR P +L+NG  GIAVGM
Sbjct: 124 MRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGE+++G +A+I NP+I  + LM+ I GPDFPTGA ILG TGI+ AY TGRG
Sbjct: 184 ATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGTTGIREAYTTGRG 243

Query: 247 SIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ IE    +   DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDE
Sbjct: 244 SITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDE 303

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIELKR A   V+LN LY+ T LQ  F  NM+AL   +P+  TL   L  F+
Sbjct: 304 SDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGEPQLLTLKEFLHEFL 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR +V+ RRT+Y   KA +R H+L GL IA++NLD V+ +IR + +  TA++EL+    
Sbjct: 364 KFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELI---- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                          SY         LSE Q  AIL+++L RLT L  + I+ E   L  
Sbjct: 420 --------------DSYG--------LSEPQADAILQMQLRRLTALEAEKIQREHEDLVA 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL    R+L II+ E+  +K    +PRRT I +   +++  D I  +  V+ V
Sbjct: 458 QIADFQDILDRPERILSIIQTEVEQLKTRFASPRRTVIEQLEGEIDTTDLIANQKAVILV 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+P+  + AQ R G+GR G  ++++D V   F    H  +LFFS  G  Y  K
Sbjct: 518 TEQGYIKRMPVDTFEAQSRDGRGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLK 577

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
            +++PIGS  ARG  ++ +L + + E+IT+++P   F EDE      Y+V  T  G +++
Sbjct: 578 AYQIPIGSRNARGVPIVQLLPIPREEKITSVVPVDEFREDE------YLVMLTAGGYIKK 631

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718
             LS F  I  +G IA+ L++ D++  V    + + I++ ++ G  + F     ++   G
Sbjct: 632 TALSAFSNIRANGLIAIALETGDQLRWVRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLG 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVR ++L  GD++I M I+  A                           + +L   
Sbjct: 692 RATRGVRAMALRAGDELIGMDILPSAI--------------------------VANLAVA 725

Query: 779 SSVEGNISEERCQELKLKE---------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +S     SEE  +E+ L+E          ++L V+  GFGKR     FR+ NR+GKGI A
Sbjct: 726 TSDAEVESEEGAEEMPLEEIPINADNPGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           T          L A+  VN  D++++V+++G +IR  V  I   SRA  GV +    +++
Sbjct: 786 TKFKTRQTQDQLAALRIVNGEDELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRLDEED 845

Query: 890 RVVSVERIRESEIVDEAE 907
            + +V  +  +E+ D  E
Sbjct: 846 SIAAVTIVPSTELTDSEE 863


>gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514]
 gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514]
          Length = 893

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/920 (40%), Positives = 554/920 (60%), Gaps = 87/920 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +++ DE++NS+L Y+++VI+ RA+PD+RDGLKP  RRILF M  + +  N+++ KCA
Sbjct: 24  VAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDLSLYPNRQHRKCA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+  G YHPHG A IY  L  MAQ W++R  LI+GQGNFGS++GDPPAA RYTE R+
Sbjct: 84  KICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGDPPAAMRYTEARM 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 L+ D+ KDTVDF PNYD + +EP V  A +PN+LVNGG GIAVGMATN+  HNL
Sbjct: 144 THLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIAVGMATNMAPHNL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG  A ID+P I +  LM+ I+GPDFPTG ++ G  GIK  +ATGRG I +RG   
Sbjct: 204 GEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMVCGLEGIKKYFATGRGQIKMRGKVD 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    REQIV++ +P+ VN A + E+IAELV EK I DI+ LR+ESD +  R+VIELK
Sbjct: 264 VEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNESD-ENTRIVIELK 322

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS  V++N LY +TSL+S F+VN +A++  +P+   L  ++ A++  R EV++RRT++
Sbjct: 323 RDASPKVVINNLYNHTSLESSFAVNALAIDHGRPKTLGLKDLINAYIEHRREVIMRRTRF 382

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RA  L G  IA++N+DE +RIIR S N E AR +L+   +N   ++ +  LI 
Sbjct: 383 ELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFDFNRQQVEQIGILIR 442

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D +    ++G    SE Q  AIL+LRL +LTGL  D +R E  +L   IK+ LDIL+  S
Sbjct: 443 DEARL--TNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIERIKDLLDILAKES 500

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L IIK EL  +K++  TPR T +V    +M  ED I  E +++T++H G +KR  +S 
Sbjct: 501 RVLEIIKAELREIKEKYATPRMTDLVPDEGEMALEDLITNEGVIITITHGGLIKRTNVSS 560

Query: 556 YRAQRRGGKGRSGVVMRD--------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           YRAQRRGGKG  G+  R+        +DF+  LF   TH  ++FF++ G V+ E+V  +P
Sbjct: 561 YRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTHDYLMFFTNSGRVFVERVHEIP 620

Query: 608 IGSPQARGKALINILSLNQGERITTIM-------PFPEDESSWNNLYVVFATKHGNVRRN 660
             +  ++G+++ N+L L   E+I  ++       P  ED++   +  + FAT+ G V++ 
Sbjct: 621 DMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKEDQTWTQSGELFFATQQGTVKKT 680

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN------------DILLTTKLGQCVRF 708
            L+DF  + + G IA+ ++  D ++ V+                  D++L T+ G  +RF
Sbjct: 681 SLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLITREGMSIRF 740

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             S +R   GRN+ GVRGI+L K D V+++A VL  DA                 L++G 
Sbjct: 741 AESNVRSM-GRNATGVRGINLEKTDAVVALA-VLVPDATL---------------LVAG- 782

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                               E G GKRT   ++R+ +R GKGI 
Sbjct: 783 ------------------------------------ENGIGKRTDFGEYRVQSRGGKGII 806

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
               +  ++ G +V    V DND+I+L+++ G ++R+ V +IR A R T+GV + +    
Sbjct: 807 TMKTN--DKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDIREAGRNTQGVKLINLEAG 864

Query: 889 ERVVSVERIRESEIVDEAES 908
           +++ ++  +  SE  +EAE+
Sbjct: 865 DKLQAISPVI-SEEKEEAET 883


>gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 824

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/900 (41%), Positives = 551/900 (61%), Gaps = 88/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 9   QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+ G  P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQGGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +  +KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL  D I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLEHDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+L II++EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S   + Y+ F T+ G V+R  ++DF  I +
Sbjct: 583 RTAKGLPIVNLLKLDEGETIQTIINVEQDHSQ--DSYLFFTTRLGVVKRTSVADFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +V    +D DE +   +    +R L S                        
Sbjct: 700 DGDQVVGAGVV----SDNDEVLVITEKGYGKRTLAS------------------------ 731

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                                    ++    R GKGI+  ++++ N  G L  +  VN  
Sbjct: 732 -------------------------EYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V   +VE   + E+ DE E
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 824


>gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12]
          Length = 810

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/890 (40%), Positives = 541/890 (60%), Gaps = 91/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K A
Sbjct: 4   ISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE R+
Sbjct: 64  RIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARM 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP HNL
Sbjct: 124 SKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VDG + +IDNPDI    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG   
Sbjct: 184 GELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGKVK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +  I++ EIPYQ+NKA ++E+IA LV+EK+I  I DLRDES+R+G RVVIELK
Sbjct: 244 IEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  ++  R +V+ RRT +
Sbjct: 304 KGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKILTLKQMLSEYIGHRFQVITRRTLF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++               
Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYA------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS  S
Sbjct: 411 -------------FTEIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILELQDILSHDS 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++  I+K+ELL VK+     RRT I E  +++  ED I  E+M++T ++ GY+KR+  + 
Sbjct: 458 KIYDIMKKELLEVKEVYGDNRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEANK 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y++Q RGGKG SG+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+RG
Sbjct: 518 YKSQNRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRG 577

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + + NIL + + E+I  I+    F +++       ++F TK G V++  L +F  IN  G
Sbjct: 578 RLISNILRIGEEEKIRAIIKTRIFDKEKE------LIFVTKQGIVKKTSLEEFKNINTGG 631

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            IA+K    D+++ V      +N++ + T+ G  VRFP   +R   GRN++GV+GI L +
Sbjct: 632 LIAIKFKEEDDLIYVGLVEASDNEVFIATRRGFAVRFPNDNVRP-TGRNTMGVKGIELRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+S  ++   + D                                            
Sbjct: 691 KDEVVSALLIKEKEMD-------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRT   ++   NR GKG+   ++    + G +V+V    D +
Sbjct: 707 --------ILTITENGYGKRTRLDEYPSHNRGGKGV--INLRCNEKTGNIVSVLSAFDEE 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++ ++  G +IR P++ I   SRA +GV+I   A DE+V S+ RI+  E
Sbjct: 757 ELVCITSNGVIIRTPMHSISRFSRAAQGVIIMKVASDEKVASITRIKAEE 806


>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
 gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
          Length = 850

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/900 (40%), Positives = 546/900 (60%), Gaps = 86/900 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+      +   M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + 
Sbjct: 11  EEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHELGVTPDKPHK 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R  LI+G GNFGSVDGD PAA RYTE
Sbjct: 71  KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDSPAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ KDT+++R NYD + +EP VL +R PN+LVNG  GIAVGMATNIP 
Sbjct: 131 ARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGIAVGMATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H+LGEV+     ++ NPD+    LME++ GPDFPTG ++LG++GI+ AY TGRGSI +RG
Sbjct: 191 HHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVLGKSGIRRAYETGRGSITVRG 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IE+    +E+I++TE+PY VNKA ++E+I++L  EK+I  I  L DESDR+G RVVI
Sbjct: 251 RVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLNDESDRKGMRVVI 310

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++R  SA V+LN LY+ T LQS F  NM+A+ G +P+  +L  IL+ ++  +EEV+ RR
Sbjct: 311 EVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVGQEPKILSLKEILRHYLNHQEEVIRRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + +   KA DRAH+L GL +A+ ++D +V I+R S + + A+   M              
Sbjct: 371 SIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNEYG---------- 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q +AIL++R+ RLTGL R+ I  E   L   IKE  +IL+
Sbjct: 421 ----------------LSDKQAQAILDMRMVRLTGLEREKIDAEYADLQALIKELNEILA 464

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S  R   II+QELL ++ + D PRRT ++ G  L +EDED I +ED+V+T++  GY+KR+
Sbjct: 465 SEERRYEIIEQELLEIQQKFDNPRRTELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRL 524

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S ++ QRRGG+G  G+ + D+DFV ++   STH S+LFF++ G VY+ K + +P  S 
Sbjct: 525 ANSEFKTQRRGGRGVQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSR 584

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN+L+++  E+I  I+  PE + +   L+  F T  G V+R KLSDF  I  +
Sbjct: 585 TAKGLPVINLLNIDSTEKIQAIISVPESDETERFLF--FTTLRGTVKRVKLSDFKNIRTN 642

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A++L   D+++ V   + ++ I+L T  G  V F    +R   GR + GVRG+SL  
Sbjct: 643 GLRAIQLREDDQLIRVVVTSGQDGIILGTYHGNAVTFHEEKVRAM-GRTAAGVRGVSLRD 701

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI M I                 ++ +R ++                          
Sbjct: 702 DDYVIGMDI-----------------LTPEREVL-------------------------- 718

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                      VSEKG+GKRT++ ++ +  R GKG++   +++ N  G LV +  V   +
Sbjct: 719 ----------VVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKN--GPLVCLRTVTGEE 766

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910
            ++++++KG +IR   +++    R   GV +    +D  V S+  + RE E  +   S+E
Sbjct: 767 DLMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVDREEEAEETVTSSE 826


>gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740]
 gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes]
          Length = 828

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/899 (42%), Positives = 553/899 (61%), Gaps = 92/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV     Y K A
Sbjct: 11  IKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGVGARAAYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 71  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +A+  +L D+ K+TVDF  NYD + +EP VL +R PN+LVNG  GIAVGMATNIP H L
Sbjct: 131 TQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVGMATNIPPHRL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+  + +ID+P  +L+ LM  + GPDFPTG +I G+ GI  AY TGRG I +R  +H
Sbjct: 191 DEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIYGKQGIIEAYRTGRGRIRVRAKTH 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK    ++ IV+ E+PYQ NKA ++E+IAEL +EK I  IA++RDESDR+G RVVIELK
Sbjct: 251 IEKNK-TKDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDREGIRVVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A ++++LN L++ T++++ F + ++A++  +P+ FTL+ +L  F+  R+ VV+RRT +
Sbjct: 310 KDAMSEIVLNHLFKSTAMETTFGIILLAIHNKEPKIFTLLELLNLFLNHRKTVVIRRTIF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE+V +IR S + + A+  LM R               
Sbjct: 370 ELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMAR--------------- 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q++AIL++RL RLTGL R+ I NE   L  EI+    IL S  
Sbjct: 415 -----------FGLSEIQSQAILDMRLQRLTGLEREKIENEYQELLKEIERLTAILRSEE 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  IIKQEL+ ++++  T R+T I E    ++ ED I  E  VVT+SH GYVKRVPL  
Sbjct: 464 KLNEIIKQELIEIREKFSTKRKTTIEEDYESIDIEDLIPNEPTVVTMSHRGYVKRVPLRS 523

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+      D+DF+   F+ +TH ++LF +  G +Y  KV+R+P     A G
Sbjct: 524 YEKQNRGGKGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAGRTAIG 583

Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N++ +   E+I    T   F ED+S      ++F TK+G V+R+ LS+F  I   G
Sbjct: 584 KAVVNLIQIGADEKIMATITTQDFNEDKS------LMFFTKNGIVKRSNLSEFKNIRSVG 637

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ LD  DE+++     +   +I + T  G C+RFP+  IR   GR + GV GI   +
Sbjct: 638 IRAINLDDNDELVTARIIDSNVKEIFVATYKGMCIRFPVEDIREI-GRVARGVTGIRFKE 696

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                        D DY                ++G T               I +E+ +
Sbjct: 697 -------------DEDY----------------VAGAT--------------TIGDEKEE 713

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +LTVSEKG GKRT + ++R+ +R GKG+ A  ++   + G LV V  V+++ 
Sbjct: 714 --------LLTVSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTP--KTGQLVGVVNVDESM 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            ++L++  G +IRV +  IR A R T GV+I + + D++VVS+ R  + E  +E  S E
Sbjct: 764 DLMLLTSTGKMIRVDMQTIRKAGRNTSGVIIVNVS-DDKVVSIARCPKEENPEEEASDE 821


>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
 gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
          Length = 911

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/890 (42%), Positives = 539/890 (60%), Gaps = 75/890 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTE RL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTESRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q      LL D+  +TVDF  N+DGS QEPVVL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG VA+IDNP +    LME I GPDFPTGA I+G  GI+ AYATGRGS+ +RGV+
Sbjct: 188 LGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSRGIREAYATGRGSVTMRGVA 247

Query: 255 HIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE  +T G  DRE I++TE+PYQ NKAA++EKIA++V E R+  I+DLRDESDR G R+
Sbjct: 248 TIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQ+ F VNM+ L   +P+  +L+  L+ F+ FR E + 
Sbjct: 308 VIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSEPQLLSLLDFLQVFLDFRIETIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++R H+L G  IA+ NLD V+ +IR S +  +A+ EL++           
Sbjct: 368 RRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIE----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                  SY          S  Q  AIL+++L RLT L  + I+ E  +L  +I +  DI
Sbjct: 417 -------SYG--------FSATQADAILQMQLRRLTALEAEKIQQEHEALTEKIADLEDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++R R+L IIK+E++ +++     RRT I     D+ D   I  E + + V+  GY+KR
Sbjct: 462 LANRDRILAIIKEEVIQIRNAYANERRTLIKADENDLSDISLIANEQVAILVTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  + AQ R  +G+SG  M+D+D +       +H  VLFFS  G  Y  + +++P  S
Sbjct: 522 MLVDTFEAQNRATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESS 581

Query: 611 PQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G  L+ +L + + E++T+++    F ED+      Y+V  T+ G +++  LS F +
Sbjct: 582 RTAKGYPLVQMLPIPKEEKVTSVIGVSEFSEDD------YLVMLTQGGFIKKTALSAFNR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  DE+  V   T ++ +L+ ++ G  + F     ++   GR + GV+ 
Sbjct: 636 IRTNGLIAISLEDGDELRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPLGRPTKGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +SL +GDQ+ISM I                       L S   EE+    +D       S
Sbjct: 696 MSLREGDQLISMDI-----------------------LPSQVVEEVEGAIDD-------S 725

Query: 787 EERCQELKLKEQ--FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +E   EL   +Q  ++L VS  G GKR    +FR+ NR+G G+ A    K  +   LVA+
Sbjct: 726 DEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKFRKDGD--ELVAL 783

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +D++++VS +G ++R  V+ I + SR   GV +     D+ + +V
Sbjct: 784 RIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAV 833


>gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411]
 gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411]
          Length = 812

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/883 (41%), Positives = 532/883 (60%), Gaps = 89/883 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I  V I D MQ SYL Y+++VI+GRAIPD RDGLKPVHRRIL+ M ++ +E NK Y 
Sbjct: 7   DKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDAL RM+QD+S+R  LI+GQGNFGS+DGD PAA RYTE
Sbjct: 67  KSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L DL K++VDF PNYD S +EP VL    PN+L+NG  GIAVG AT IP 
Sbjct: 127 VRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIPP 186

Query: 193 HNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +NL E++D C+A +D + +I  D ++  I+GPDFPTG +      IK AY  G G I +R
Sbjct: 187 NNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIKSIKEAYKKGIGKITLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                EK   +R+ +VV EIPYQVNKA +L+ IA+LV++K++  IADLRDES+++G R+V
Sbjct: 247 AKVKEEKIK-NRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+     VILN+L++YT+LQ+ F VNM+AL G  P    +   +  FV  R +VV R
Sbjct: 306 IEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVKR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +LL+KA+DRAH+L GL I + N+DEVV II+ S + + AR  L +R           
Sbjct: 366 RTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKER----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ QT+AIL+++LARL  L +  + +E N +  +I+    IL
Sbjct: 415 ---------------FKLSDRQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             RS L G+IK EL+ VK      R+T+I++ ++D+  ED I  E +++T S  GYVK V
Sbjct: 460 KDRSVLKGVIKDELVYVKQTYADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKAV 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL VY  Q RGGKGR      D D++TD+F+ ++  ++L F++LG VY  K + +P  SP
Sbjct: 520 PLDVYSTQHRGGKGRMAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSP 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G+ ++NIL+L   E + TI+P  E +S +      FAT  G V+R+    F  I  +
Sbjct: 580 SAKGRPIVNILNLQPQEFVKTIVPISEADSLF------FATAAGTVKRSSFRHFENIPSN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA++L+ +D ++SV +  + +++++TT+ G CVRF   ++R   GR + GVRGI+L++
Sbjct: 634 GKIAIRLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFDSDSVRDM-GRAAAGVRGINLSE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S                                              N ++++  
Sbjct: 693 GDSVVSAF--------------------------------------------NFNQDKHT 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L       + VS+ G GK     D R  NR  KG+R     K+ E  ++     + D  
Sbjct: 709 KL-------IVVSQTGLGKLLRVSDIRKVNRGAKGVRCI---KLKENDSVAGSLSLKDTG 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +I+V+  G +I++  + I + SRA +GV + +  + + VVS+
Sbjct: 759 DVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSI 801


>gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 813

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/883 (41%), Positives = 539/883 (61%), Gaps = 84/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++++SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G  +N+ Y K A
Sbjct: 1   MSNISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL RMAQD+++R  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A   L D+ K+TV+FR NYD +  EP VL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 SRLAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + ++DNP+ ++  LM+ I+ PD PTGA I    G+  AY TGRGS  IR    
Sbjct: 181 GEVIDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLKGVLEAYRTGRGSFKIRSRLD 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E  S   E IV+ E+PY +NKA ++EKIA LV +K+I  I+DLRDESDR G R+VI+LK
Sbjct: 241 VETRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA +DVI+N+LY+ T+L++ F +NM+A+   +P+   L  +L+ F+  R+EV++RR+++
Sbjct: 301 KGAISDVIINKLYKLTALETSFGINMMAVVNNRPQLLNLKQVLEYFLEHRKEVILRRSRH 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ N+DEVVR+IR S     AR +L+                 
Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLI----------------- 403

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            S+++        LS+VQ +AIL++RL RLT + R+ +  E   L  +I+    IL +  
Sbjct: 404 -SNFS--------LSQVQAQAILDMRLQRLTNMEREKLMQEYRELLQQIEFLKSILENID 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G IK+EL  +K    TPRRT+I+E   D +E  D I   D+VVT+S  GY+KR  L 
Sbjct: 455 ILKGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLE 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG +G  + D+DF+T LF  S H  +  FS+ G  Y  K + +P GS  AR
Sbjct: 515 YYHQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L+  E I T +    + +     Y +F TK G V++  +  F  +   G I
Sbjct: 575 GVHIKNLLPLDNEEYIATAL---SERNFHQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    E+++++TT  G  +RF    +R   GRN+ GV+GISL +GD+
Sbjct: 632 AVNLKPGDELIGVKVVKDESEVIITTHDGLAIRFACRELRAM-GRNAAGVKGISLRQGDE 690

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S A+                       L  G+  E                       
Sbjct: 691 VVSGAV-----------------------LDPGEARE----------------------- 704

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                + T+SEKGFGK+TS   +++  R GKG+    V+  ++ G +V+  PV+D +++I
Sbjct: 705 -----LFTISEKGFGKKTSLDMYKLQARGGKGLINMKVT--SKTGKVVSSMPVSDQEELI 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +    +IR+  ++IR   R+T+GV +     D++V+  + I
Sbjct: 758 IFTSANKIIRLGTSDIRSVGRSTQGVKMVDLENDQKVICADLI 800


>gi|256830857|ref|YP_003159585.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
 gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 848

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/883 (41%), Positives = 539/883 (61%), Gaps = 84/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++++SI  E+Q SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++G  +N+ Y K A
Sbjct: 1   MSNISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG++A+YDAL RMAQ++++R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A   L D+ KDTV+FRPNYD S QEP VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 SKLAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDG + ++D+P + +D LM+ I+ PDFPTGA+I G+ GI+ AY TGRGS+ IR    
Sbjct: 181 GEVVDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIYGKAGIREAYRTGRGSVRIRSRIE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  GD E IVV EIPY +NK+ ++EKIA LV E++I  I+DLRDESD +G R+V++LK
Sbjct: 241 IEKRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G  +DVI+NQL+++TSL++ F +NM+A+   +P+   +  +L+ F+ +R EVV+RR+++
Sbjct: 301 KGVFSDVIVNQLFKFTSLETSFGINMMAVVNNRPQLLNVKQVLEYFLDYRREVVIRRSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+  +DEVV +IR S  P+ A+  L +R               
Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRERFG------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLT L R+ +  E   L  +I+    ++ +  
Sbjct: 408 -------------LSEIQAQAILDMRLQRLTNLEREKLLEEYAELLKQIEYLTSVIENTE 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLS 554
            L  +I+QEL  ++D   TPR++ I+    D  D ED I  E +V+T+S  GY+KR  L 
Sbjct: 455 VLKSVIRQELQDLRDNFATPRKSEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLD 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGG G +GV + +EDF+T +   S H  +  FS+ G +Y+ KV ++P G   AR
Sbjct: 515 NYRQQRRGGTGITGVQVAEEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK + N+L L+  E I   M   + +      +  F TK G V+R+ +  +  I   G I
Sbjct: 575 GKHVANLLPLDSNEYIAAAMTCRDLDQEK---FYFFYTKLGVVKRSSVHLYRNIRAVGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ +   DE++ V      ++++L T  G  +RF  S +R   GR + GV+G++L KGDQ
Sbjct: 632 ALGMRDDDELIGVREVETNDEMVLVTVDGYSIRFACSDVRAM-GRTATGVKGLALRKGDQ 690

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++  +V++ D                                                 
Sbjct: 691 VVA-GVVVNKDT------------------------------------------------ 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +Q +LT++E G+GKRT    FR  +R GKGI    ++   + G +V    V   D++I
Sbjct: 702 --QQELLTIAENGYGKRTQVEHFRAQSRGGKGIINMRITP--KTGKVVGAMMVYPTDELI 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           L++    +IR+ +++I +  RAT+GV +     ++ VV  + +
Sbjct: 758 LLTSGSKIIRIGISDISLVGRATQGVRLVRLEDEQTVVCFDHV 800


>gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
 gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
          Length = 809

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/887 (41%), Positives = 539/887 (60%), Gaps = 100/887 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K ARI 
Sbjct: 9   INIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DP AA RYTE RL + 
Sbjct: 69  GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEARLAQI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 129 AEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
                 +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +HI +
Sbjct: 189 CQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              +R+ I VTEIPYQVNKA ++ KIAELV+++++V I+DLRDESDRQG RVVIELKR A
Sbjct: 249 VD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMRVVIELKRDA 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR+++ L 
Sbjct: 308 EPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFELK 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            A+DRAH+L GL  A+  +D ++ IIR S N +TAR+ LM                    
Sbjct: 368 AAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLM-------------------- 407

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      S +Q +AIL+L+L RL  L R  I +E   L   I    D+LS   ++ 
Sbjct: 408 ------AEFDFSAIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIY 461

Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            ++K++   ++     PR T I  +G+++  +ED +   D++VT+S  G++KRVP +V+R
Sbjct: 462 ALVKEDAKDLRGSYGQPRATEISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPANVFR 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGK 616
            Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P  + + A+G 
Sbjct: 522 LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGT 581

Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           A++N++ + Q ERIT I+    FP D       +++ AT  G +++  L +F  +  SG 
Sbjct: 582 AIVNLIPVTQDERITAILDLKSFPADH------FLLMATNKGEIKKTSLQEFTAVRSSGL 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAM L + DE+++    T+E DILL T+LGQ +RFP+S +R  + R S GV+ I L+KGD
Sbjct: 636 IAMDLATSDELVAAVETTEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSKGD 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM                                       D + EG +        
Sbjct: 695 EVVSM---------------------------------------DVAQEGTL-------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++TV+E G GK T+  ++   +R+G G+   +   +++ G +VA   V++ DQ+
Sbjct: 708 ------VITVTENGAGKLTAIEEYPQQHRAGSGV--INFKVVDKTGEVVASKVVSETDQM 759

Query: 854 ILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSV 894
           +L+S  G + R  V E      I I  RAT+GV +    + +RVV+V
Sbjct: 760 MLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           + F+L  + KG  K+TS  +F     SG  + A D++  +E   LVA     +   I+L 
Sbjct: 607 DHFLLMATNKGEIKKTSLQEFTAVRSSG--LIAMDLATSDE---LVAAVETTEEKDILLA 661

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  G  IR PV+E+R + RA+ GV     +K + VVS++  +E  +V
Sbjct: 662 TRLGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQEGTLV 708


>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 806

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/885 (41%), Positives = 543/885 (61%), Gaps = 89/885 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +KG+  V + ++M+ SYL Y+++VI+ RA+PD++DGLKPVHRRI++GM  +G++ N  Y 
Sbjct: 6   DKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMGK+HPHG+++IYDA  R+AQ+++ R  L++GQGNFG++DGD  AA RYTE
Sbjct: 66  KSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K    +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMATN+P 
Sbjct: 126 LRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNMPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G ++ IDN +I +D LM  I+GPDFPTGA I+GR GIK AY TGRG I +R 
Sbjct: 186 HNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGKIQVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           V+ IE+    R +IVV EIPYQVNK+ ++ KIAELV+ K I  I+ +RDES R+G R+ I
Sbjct: 246 VAEIEEEKNKR-RIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIRIAI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +LKR A+ +V+LN+LY+ T +Q+ F + N+  +NG  P+   L  ++  +V  +  VV R
Sbjct: 305 DLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGV-PKILNLKELISYYVDHQINVVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA+ RAH++ GL IA+ N+D ++ I+R S N + A+ +  +            
Sbjct: 364 RTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFG--------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AIL++R+ RLTGL R+ +  E   L   I E  +IL
Sbjct: 415 -----------------LTEIQGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +  +L+ IIK EL+ ++D+    RRT I     +++ ED I  ED+V+T++  GY+KR+
Sbjct: 458 ENHEKLMSIIKDELIEIRDKFGDLRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y+ Q+RGG+G S +  R+EDFV DLFI STH  +LFF++LG  Y  K + +P  S 
Sbjct: 518 PEGTYKPQKRGGRGISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q++G A+INIL+L+  E++ +I+P  E +    NL +V ATK G ++R    +   I +S
Sbjct: 578 QSKGTAIINILNLSANEKVQSIIPVREYDP---NLNIVMATKDGIIKRISFEEIKNIRKS 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  AM L   D I+     T E++++L TK G  +RF    +R   GR S+GV+ I L K
Sbjct: 635 GINAMTLRDGDSIIGTRLTTGEDELILVTKKGMSIRFKEDEVR-LTGRTSMGVKAIELNK 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+   +V                        S D                       
Sbjct: 694 DDEVVGFDVV------------------------SAD----------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 +++L +S+ GFGK T   ++RI +R+GKGI    V   ++ G LV+   ++ ND
Sbjct: 707 ------KYLLVISQNGFGKLTPIDEYRIQSRAGKGIITYKVK--DKTGDLVSAKIIDKND 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +I++++ +G +IR+    I +  R+T GV + +  KD  VV+V +
Sbjct: 759 EIMMITSEGIIIRIETEGISVMGRSTSGVKLMNI-KDSEVVAVAK 802


>gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5]
          Length = 850

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/903 (40%), Positives = 554/903 (61%), Gaps = 96/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF+PN+D + +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E ++  V +IDN      +  ++ L+EI++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 RETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D S R+G R+
Sbjct: 249 RAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL----NGYKPERFTLIGILKAFVAFRE 366
            I+L++ A+A+VILN LY++T LQ  F V M++L       +P+   L  +L+ ++  +E
Sbjct: 309 CIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLEYYLEHQE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRT+Y LNKA++RAH+L GL  A+ N+DEV+RIIR S N + A++EL+ R      
Sbjct: 369 NVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELIDR------ 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ +AI+++RL  LTGL R+ +  E   L  +I++
Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRK 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+ R  LL +I++E+L++ ++    R+T I   + D+  ED I RE+ V+ ++ LG
Sbjct: 463 FQAILADRKLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTVIAMTKLG 522

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+ +  +R+Q RGG+G  G+   ++D++ +L + +TH  ++FF++ G VY+ KV+ +
Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVYRLKVYEI 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     ARG A+IN+L L  GE+IT ++P  + E      Y++ ATK G V++  + D+ 
Sbjct: 583 PEAGRTARGTAIINLLQLAPGEKITAVIPLRKYEEGH---YLMMATKKGLVKKTPIKDYE 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G  A+ L   DE++ V+      DI+L T+ GQC+RF  + +R   GR S+GVRG
Sbjct: 640 NVRKTGLTAIVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKETDVR-STGRASMGVRG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L  GD+V++M   L+   DY                                      
Sbjct: 699 MNLTDGDEVVAMQ--LNTQGDY-------------------------------------- 718

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L VSE G GKRT+  +F + NR GKG++   +++  + G +V    
Sbjct: 719 -------------LLVVSENGMGKRTAMSEFVVQNRGGKGVKCYKITE--KTGNVVGAKA 763

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN+ ++I++++ +G +IR+   +I +  R T GV + +  +   V S+ ++R+ +   EA
Sbjct: 764 VNEENEIMMITTEGIIIRLQCADISVLGRITSGVKMINLTEGVTVASIAKVRDKD--PEA 821

Query: 907 EST 909
           ++T
Sbjct: 822 DTT 824


>gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415]
 gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415]
          Length = 829

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/883 (41%), Positives = 551/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+D P+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ +LM R           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK E+  +K +   PRRT ++ G +L +EDED I  E++++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEENVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV DL   STH  VLFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E    +L+  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLTDGETIQTIISLNQNEIDEKSLF--FTTRQGLVKRTSISEFTNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V   T +++I++ T  G  VRF    +R   GR + GV+GI+L 
Sbjct: 634 NGLRALNLKDGDELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNM-GRGATGVKGITLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             DQV+  +++                                  ++D  V         
Sbjct: 693 DADQVVGASVI----------------------------------RDDQEV--------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     L ++EKG+GKRT + ++    R GKGI+  +++  N  G+L  +  V+ +
Sbjct: 710 ----------LVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GSLAGLVTVDGH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I++++D G +IR  V+ I    R+T GV +    ++ ++V+
Sbjct: 758 EDIMIMTDTGVIIRTGVSNISQTGRSTMGVKVMRLDENAKIVT 800


>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
 gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
          Length = 870

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/900 (40%), Positives = 540/900 (60%), Gaps = 101/900 (11%)

Query: 8   SDEEEEKG---------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           +DEEE  G         +    +  +M+ S++ Y+++VI+ RA+PD+RDGLKPVHRRIL+
Sbjct: 27  ADEEETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILY 86

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G+  N+ + K AR  G+V+GKYHPHG+ A+YD + RMAQ +S+ + L++G GNFG
Sbjct: 87  AMNESGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFG 146

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA RYTE RL + A  LL DL K+TVD++PNYD S +EP VL AR+PN+LVNG
Sbjct: 147 SIDGDSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNG 206

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV+D    VIDNPD+ LD L++++ GPDFPTGA I+GR GI+
Sbjct: 207 SQGIAVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIMGREGIR 266

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    I +T   R  I V EIPY VN+  +LEKI EL+R+K++ +I++
Sbjct: 267 EAYETGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISN 326

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D +DR G  ++IELK+ A   V+LN+LY++T +Q+ F  NM+AL    P   +L  IL
Sbjct: 327 VHDGADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDDVPHTLSLKQIL 386

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A + +V+ RRT+Y L KA +RAH++ GL IA+ N+DEV+ IIR S   + AR  L+
Sbjct: 387 SYYIAHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLI 446

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           + ++N                         L E+Q  AILE+RL RLTGL  D +  EL 
Sbjct: 447 E-NFN-------------------------LDEIQANAILEMRLRRLTGLEYDKLVEELR 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537
            L   I     +L   + +  IIK+E+  +K +  + RRT+I      D++ ED I  ED
Sbjct: 481 DLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDIDVEDLIADED 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTV+  GYVKR+PL+ YR Q+RGGKG  GV ++++DFV  LF+ STH  +LFFSS G 
Sbjct: 541 MVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGK 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKH 654
           VY+ KV+ LP     ARG A++N+LSL +GE I  ++    FP++E      Y++FAT  
Sbjct: 601 VYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDFPKEE------YLMFATSA 654

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  +S + +  R G IA+ L+  DE++SV+  +    + + +  G+ + +  S  R
Sbjct: 655 GMVKKTSMSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSAGKAIVWDESEAR 714

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR++ GVRG+ +                   DE +  M     Q  L          
Sbjct: 715 AM-GRDTKGVRGMKVPA-----------------DEHVLEMSIAKPQADL---------- 746

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F++T  EKG+GKRTS Y++ + +R G+G+    +++
Sbjct: 747 ------------------------FVIT--EKGYGKRTSVYEYPLHHRGGQGVYTITMTR 780

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L A   V D++++I+++++G ++R PV  +    R+T+GV I +    ++V +V
Sbjct: 781 --KKGELAAAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKDKVRAV 838


>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 847

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/897 (40%), Positives = 546/897 (60%), Gaps = 85/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 9   ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 129 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R    
Sbjct: 189 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRAKVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++I+V EIPY VNKA ++ +IA+L R K I  I D+ DE+DR G R+VI+++
Sbjct: 249 IEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E+VV RRT++
Sbjct: 309 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL IA+ ++DE++ IIR S   E A+ ELM                 
Sbjct: 369 DLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                    G   LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  DIL+ R 
Sbjct: 412 ---------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKDILAHRE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  EL+ ++ +    RRT +  G + ++EDED I  +D++VT++H GY+KR+P+ 
Sbjct: 463 RINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVD 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY  K + +P     A+
Sbjct: 523 EFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRAAQ 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L+++  E+I+ ++     E++ ++ ++ F TK G V+R  + +F  I  +G  
Sbjct: 583 GIPIINLLNIDSKEKISAVINVSH-ETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLK 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    +  +++ T+ G  + F  + +R   GR + GVRGI L   D 
Sbjct: 642 AINLHDDDELIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRDNDS 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  A  LH D +                                               
Sbjct: 701 VIGAA-PLHQDDN----------------------------------------------- 712

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L +SE GFGK+T + ++ I  R G G++  +V+K N  G LV +  V  ++ I+
Sbjct: 713 -----VLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDEDIM 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910
           LV+D+G +IR  +  +    R+  GV +       +V ++ ++ +E +  D+A+ TE
Sbjct: 766 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDSDDDAQGTE 822


>gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
          Length = 840

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/878 (40%), Positives = 531/878 (60%), Gaps = 83/878 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+   K Y K A
Sbjct: 8   IIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++Y A+ RMAQ+WSLR  L++GQGNFGSVDGD PAA RYTE R+
Sbjct: 68  RIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ KDTVD   N+DGS +EP VL  R P +LVNG  GIAVGMATN+P HN+
Sbjct: 128 AKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATNMPPHNI 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            + +D   A IDN DID++ L++II+ PDFPTG  I G +G++ +Y TGRG +VIR  + 
Sbjct: 188 KDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIYGYSGVRESYLTGRGRVVIRPKTS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+++V EIPY VNKA ++ +IA+L+ EK+I  I+++ DESDR+G R+VI++K
Sbjct: 248 VEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMRIVIDIK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A ++V+LN L ++T+LQS F VN VAL   +P    L  I++ FV  R +VVVRRT++
Sbjct: 308 KDAISNVVLNTLLKHTALQSSFGVNNVALVHGRPRLLNLKDIIRYFVEHRHDVVVRRTQF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA  ++DEV+R+IR S  P+ A+  LM                 
Sbjct: 368 ELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMD---------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ Q  AI+ +RL +LTGL +D +R E   +   I    D+L+   
Sbjct: 412 ----------AFSLTDKQAAAIVAMRLGQLTGLEQDKLRAEYEDIEKLIAHLNDVLAHVE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + IIK ELL+VK +    RRT IV    +   ED    E+MV+T+SH+GY+KR PLS 
Sbjct: 462 LRMEIIKNELLAVKAQYGDDRRTDIVYASEEFNPEDFYADEEMVITISHMGYIKRTPLSE 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGG G  G   RDEDF+  + + + H ++LFF+  G  +  KV+ +P G+ Q++G
Sbjct: 522 YKVQNRGGVGSKGSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEGTKQSKG 581

Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   +++   +   +  D    N+ Y+V  TK G +++  L  + +  ++G 
Sbjct: 582 RAIQNLLNIEPDDKVKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSRPRQNGV 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ +   D++L  +    ENDI++  K G+ +RFP S +R   GR + GVRGI +   D
Sbjct: 642 NAITIKEGDQLLEAKLTNGENDIMIAVKSGKAIRFPESKVRPM-GRTASGVRGIWMDDDD 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + I M  V   +A+                                              
Sbjct: 701 EAIGMVCVEPNNAN---------------------------------------------- 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 IL VSE GFGKR++  D+RI+NR GKG++  ++++  + G L+A+  V D D +
Sbjct: 715 ------ILVVSENGFGKRSAIEDYRITNRGGKGVKTINMTE--KTGNLIALIDVTDEDNL 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++++  G  IR+ V+ +R+  R T+GV + +   ++ +
Sbjct: 767 MIINRSGLTIRLEVSSLRVMGRNTQGVKLINLRNEDSI 804


>gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
 gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
          Length = 863

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/888 (40%), Positives = 543/888 (61%), Gaps = 88/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCA
Sbjct: 12  IMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DD+ KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATNIPTHNL
Sbjct: 132 AKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNP+I  + LM+ I  PDFPTGA I G  G+K+AY TGRG +V+R  + 
Sbjct: 192 SEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE  +GD  ++IVVTEIPY VNKA ++E IA+LV+E R+  I+++ DE+ RQG R+V+++
Sbjct: 252 IE--AGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDETGRQGMRIVVDV 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A+VILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R +V +RRT+
Sbjct: 310 KRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLNLRECIKYFVEHRHDVTIRRTQ 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R              
Sbjct: 370 FDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKR-------------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E+Q++AI+++RLA+LTGL  D +  E   L   IK   +IL + 
Sbjct: 416 ------------FELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKSLQEILDNP 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+
Sbjct: 464 ERCKEVMKEELNEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLT 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++
Sbjct: 524 DFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSK 583

Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G+A+ N+LSL  G+ +   +     ++E   +  YVVF TK G V++  L  + +   +G
Sbjct: 584 GRAIQNMLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRPRTNG 643

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ ++  DE++ V      +++++  + G+  RF    +R   GR S GVRG+ L   
Sbjct: 644 VIAININESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTM-GRVSTGVRGMKLDDD 702

Query: 733 --DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M +V                                   ND+           
Sbjct: 703 CEDEVIGMVVV-----------------------------------NDA----------- 716

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LVA+  V D+
Sbjct: 717 -----ENETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITE--KTGKLVAIKTVTDD 769

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERI 897
           + +++++  G +IR+ V + R+  RAT+GV +I  + K++ + SV ++
Sbjct: 770 NDLMIINKSGIVIRMAVAKCRVMGRATQGVRLINLSKKNDTIASVCKV 817


>gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 867

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/899 (41%), Positives = 542/899 (60%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM +  +  N  + K A
Sbjct: 12  IKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENNMYANTAHKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 72  RIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 132 SKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D   A +DNPDI +  LM+ I+GPDFPTG  ILG TG++ AY TG+G I +R    
Sbjct: 192 GEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQILGITGLRQAYETGKGIIAVRAQHE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +T  +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLRDES+R+G R+VIEL+
Sbjct: 252 IVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDESNRKGMRIVIELR 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  ++A + E++ RRT++
Sbjct: 311 KDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTHYIAHQIEIITRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  R H+L  L  A+ ++D V++II+ + NPE AR  L+                 
Sbjct: 371 DLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLI----------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E+Q R+IL ++L RLTGL  D I  E ++L  +I E   IL    
Sbjct: 414 ---------ATYDFTEIQARSILTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDED 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             + IIK EL  +KD+ D PR + + +   LD+++ED I  ED+VVTV++ GY+KR+ L 
Sbjct: 465 LKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDIVVTVTNNGYIKRMNLD 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G SGV + D+DFV  + + STH   LFF++LG V+K K + LP GS Q++
Sbjct: 525 EYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSK 584

Query: 615 GKALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G  ++N L+   GE++   TTI  F  ++      Y+ F TK G V+R  ++++  I ++
Sbjct: 585 GVPIVNYLNFQPGEKLASFTTIKDFDAEDH-----YLFFVTKRGIVKRTHINNYKNIRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  ++      ILL    G+ + F  + IR   GR + GVRG+ +  
Sbjct: 640 GIIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREI-GRTATGVRGMDIPD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            ++++  A+V                                       +E +I      
Sbjct: 699 DEEIVGFAVV-------------------------------------DGIEDDI------ 715

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                    L ++E G+GKRTS  ++R+ NR GKG++  +V+  N  G L  +  V +++
Sbjct: 716 ---------LVITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKN--GKLKTLRKVTNDE 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            II+VSD+G  IR+P+++I    RAT+GV I +   D++V ++  +   E  +E  S E
Sbjct: 765 DIIVVSDRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDHQEPEEEVVSNE 823


>gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 831

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/883 (42%), Positives = 551/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +E RI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+   +++    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                   ND            
Sbjct: 693 EEDWVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ N
Sbjct: 706 ------KQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+
Sbjct: 758 EDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVT 800


>gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
 gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
          Length = 923

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/723 (46%), Positives = 481/723 (66%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D+P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I+D
Sbjct: 241 YKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V++ D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LIR  V +IR   RA  GV + +  + E +VS+
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686
            +++ F PE E S  +L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+ ++++
Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ ++S+
Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890



 Score = 37.7 bits (86), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +VS    ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA-ATLVSETDDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            + + KV ++       R  A + +++L++GE + ++
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSL 890


>gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/903 (41%), Positives = 560/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+  MAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                   ND            
Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++   E E + E E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817

Query: 908 STE 910
            ++
Sbjct: 818 QSQ 820


>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
 gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
          Length = 826

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/899 (41%), Positives = 559/899 (62%), Gaps = 94/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FILSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F + N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-ESN 634

Query: 670 RSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           RS  I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV GI
Sbjct: 635 RSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVIGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   +                        ISGD              GN   
Sbjct: 694 KLNENDFVVGAVV------------------------ISGD--------------GN--- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV +  V
Sbjct: 713 -----------KLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGIISV 759

Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVD 904
           +D N  +++++    +IRV + +IR   R T GV + +TA K   V S  +  ESEI++
Sbjct: 760 DDENLDLMILTASAKMIRVSIKDIRETGRKTSGVKLINTADKVMYVNSCPKEEESEILE 818


>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 842

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/867 (42%), Positives = 532/867 (61%), Gaps = 45/867 (5%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRLQ   +  LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG VA+I NP+I 
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KTSGDREQIVV 268
              LM+ + GPDFPTGA ILG + IK AY TGRGSI +RG++ IE    +   +RE I++
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAIII 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+VIELKR +   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+A+LD ++ +IR +P+  TA+ EL+                  +SY         
Sbjct: 361 GLLIALAHLDSIINLIRSAPDAPTAKGELI------------------NSYG-------- 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSEVQ  AIL+++L RLT L  D IR E   L ++I +  DIL  R R+L II+ E   +
Sbjct: 395 LSEVQADAILQIQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K +  TPRRT I     +++D D I  E +++ ++  GY+KR+P+S + AQ R  +G++G
Sbjct: 455 KTQFATPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAG 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++D+D +        H SVLFFS  G VY  K +++P GS  +RG  ++ +L + + E
Sbjct: 515 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+I+   E  S     Y+V  TK GN+++  L  F  I  +G IA+ L+  D++  V 
Sbjct: 575 KITSIVSVSEFSSEE---YLVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               E+ +++ ++ G  + F     ++   GR + GV+ + L  GD++I M I+  A  +
Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRGVKSMKLKTGDELIGMDILPAAILN 691

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  M+    +   +S + EE ++++  +    NI             ++L ++  G
Sbjct: 692 TLNTDTEMEEEPTEVEELSDNIEETSNIEIATGEPANILGP----------WVLIITIGG 741

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKR     FR+ NR+G+G+ AT          L  +  VN +++I++ +++G +IR  +
Sbjct: 742 YGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQSI 801

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894
           N I I SR   GV +    +D+ +  V
Sbjct: 802 NAISIQSRTATGVRVQKLDEDDAITGV 828


>gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922]
 gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922]
          Length = 864

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/892 (41%), Positives = 543/892 (60%), Gaps = 88/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N+ Y
Sbjct: 5   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD + RMAQ WSLR LL++GQGNFGSVDGD PAA RYT
Sbjct: 65  KKSARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RLQK +  LL D+ K+TVDF+ N+D +  EP VL  R P +LVNG  GIAVGMATN+ 
Sbjct: 125 EARLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMA 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG VA IDN DI +D L + I  PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 185 PHNLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIYGYDGVKQAFETGRGRVVMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             ++ E+  G R+ I+VTEIPYQVNKA M+ K A+L+++ ++  IA++RDESDRQG R+V
Sbjct: 245 AKANFEEVHG-RDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK  A  +V+LNQLY++T LQS FS+N +AL   +PE+  L  +++ FV  R EVVVR
Sbjct: 304 YVLKMDAIPNVVLNQLYKFTQLQSSFSINNIALVNGRPEQLNLKDMIRHFVDHRHEVVVR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT++ L KA++RAH+L G    +    +LD  ++IIR S  PE AR  LM     A D  
Sbjct: 364 RTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLM----TAFD-- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAILELRL  LTGL  D IR E   +   I+   
Sbjct: 418 --------------------LSEIQARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLK 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILS       IIK+EL  +K +    RR+ I     D+  ED I  +++V+T+SHLGY+
Sbjct: 458 NILSDEDLRFSIIKEELEEIKRKYADERRSEIDYSGGDLNIEDLIPDDNVVLTISHLGYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL+ Y+ Q RGG G      RDEDF+  + + + H  +LFF+  G  +  +V+ +P 
Sbjct: 518 KRTPLTEYKKQSRGGVGNRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  ++G+A+ N++++   +++   +   +  DE   NN YV+  TK+G +++  L  + 
Sbjct: 578 GSKTSKGRAIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYS 637

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G  A+ +   D +L       ++ I++ TK G+ +RF    +R   GR + GVRG
Sbjct: 638 RPRINGINAITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPM-GRTASGVRG 696

Query: 727 ISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           I+L   K ++VI M +V                               + ++N++     
Sbjct: 697 INLGDDKDNEVIGMIVV-------------------------------SDMENET----- 720

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L VSEKG+GKRTS  D+R +NR GKG+   ++++  + G L+A+
Sbjct: 721 ---------------VLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITE--KTGKLIAI 763

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V D++ +++++  G  IR  ++EIR+  RAT+GV + +  K++ + ++ +
Sbjct: 764 ESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIAK 815


>gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
 gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
          Length = 873

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/904 (41%), Positives = 552/904 (61%), Gaps = 75/904 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  +   +  V +++EM++ ++ YA++VI+ RA+PD+RDGLKP  RRILF M ++G+  N
Sbjct: 17  DSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPN 76

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           +K++KCA+I GE MG +HPHG+ AIY  L  MAQ W++R +LI+GQGNFGS++GDPPAA 
Sbjct: 77  RKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAM 136

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  A   L+ D+ KDTVDF PNYD +  EP V  A +PN++VNG  GIAVGMAT
Sbjct: 137 RYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMAT 196

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +DG VA+ID+P +  + L+E I+GPDFPTG VILGR GI N + TGRGS+
Sbjct: 197 NIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVILGREGIVNYFTTGRGSL 256

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG  H+E+  G +  IV+ EIPY VN+A+++EKI ELV +K I +IAD+RDESD +  
Sbjct: 257 KVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESD-ENT 315

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A V+ N LYR+T LQ+ F+VNMVA++  +P+   L  +L  ++  R EV
Sbjct: 316 RVVIELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLRPKSLNLKELLSCYLDHRHEV 375

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ LNKA +RA VL G  IA++ L E + IIR S N + ARR+L+ R ++   I+
Sbjct: 376 VTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIE 435

Query: 429 DLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            L   +D    T   +G MY LS  Q  AIL+LRL +LTGL R+ I  E   L  +IK+ 
Sbjct: 436 SLGIPLDGQRMT---EGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQF 492

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+S  ++  I+K ELL +K++   PR+T+I+    ++  ED +  + +V+T++H G+
Sbjct: 493 RLILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVITLTHNGF 552

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRD------EDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +KR  L  YR+QRRGG+G  G+  +D      +DFV  LF  STH  +LFF++ G VY +
Sbjct: 553 IKRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVYIQ 612

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-------ESSWNNL-YVVFATK 653
           +V+ +P     ++GK + +IL L   E I +++    +       ESSW+   Y+ F T 
Sbjct: 613 RVYEIPEKERASKGKNIASILELKPTEEIASMLRIVANTQASDGRESSWDKEGYIFFCTL 672

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  +S+F  I + G  A+ ++  D+++       + +I+L TK GQ +RF  S +
Sbjct: 673 KGKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDV 732

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GRN+ GV GI L  GD+V+ M+IV     D+   +  +      +R          
Sbjct: 733 RPM-GRNAAGVIGIDLQPGDEVVGMSIV-----DHRATLLVVSEKGMGKR---------- 776

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                       S E  ++ K   Q ++T+              + S+++GK ++A  V 
Sbjct: 777 -----------TSFEEYRKQKRGGQGVITM--------------KTSDKTGKVVKAITVL 811

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                          D+D++++++ KG +IR+ V ++R   R T+GV +     +++V S
Sbjct: 812 ---------------DDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTS 856

Query: 894 VERI 897
           + RI
Sbjct: 857 IARI 860



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 19/221 (8%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +E  +   +  G VK+ P+S +R  R+GG   + + + + D + D         ++  + 
Sbjct: 663 KEGYIFFCTLKGKVKKTPVSEFRNIRKGGI--TAISIEENDKLIDCLFTDGQKEIVLITK 720

Query: 595 LG--FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            G    + E   R     P  R  A +  + L  G+ +   M   +  ++     ++  +
Sbjct: 721 EGQSIRFSESDVR-----PMGRNAAGVIGIDLQPGDEVVG-MSIVDHRAT-----LLVVS 769

Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R    ++ +  R G+  I MK  D   +++   T   ++++L+ T  G  +R  
Sbjct: 770 EKGMGKRTSFEEYRKQKRGGQGVITMKTSDKTGKVVKAITVLDDDELLVLTLKGNVIRIH 829

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +  +R   GRN+ GVR + L   D+V S+A ++    D +E
Sbjct: 830 VKDLRK-TGRNTQGVRLVQLDSEDKVTSIARIIPDKEDNEE 869


>gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
 gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
          Length = 831

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/883 (42%), Positives = 552/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +EKRI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+   +++    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                   ND            
Sbjct: 693 EEDWVVGASRI-----------------------------------ND------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 706 ------KQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+
Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVT 800


>gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
 gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 831

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/883 (42%), Positives = 552/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +EKRI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+   +++    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                   ND+           
Sbjct: 693 EEDWVVGASRI-----------------------------------NDN----------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 707 -------QEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+
Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVT 800


>gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 820

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/863 (41%), Positives = 533/863 (61%), Gaps = 83/863 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF   ++G  + +   KCARI 
Sbjct: 8   ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL RMAQD+S+R  L EGQGNFGS+DGD PAA RYTE R+ + 
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TVDFRPNYD S +EP+VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            +  + +ID+PD+ +D L+ II GPDFPTG  I    G+ +AY  GRG++ +RG   IE+
Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIEE 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                + IV+ EIP+ +NK++++EKIA LV E++I  IADLRDESDR+G RVVIELK+G 
Sbjct: 248 RKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKGV 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++I+N LY++T L++ F +NM+A+   +P+  T+   L  F+  R EV+VRRT++ LN
Sbjct: 308 IPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRFELN 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H+L+GL  A+ ++DEVV +IR S  P  A+  L++R                  
Sbjct: 368 KAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIER------------------ 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q ++IL++RL RLTGL R+ +  E++ L  +I     IL     L 
Sbjct: 410 --------FSLSEIQAQSILDMRLQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILW 461

Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           G+I+ E+  +K+   TPRRT ++ E L ++E ED I  +D+V+T+S  GY+KR  L++Y+
Sbjct: 462 GVIRDEVTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQ 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKG +G+   ++DFV +    + H  +L F++ G +++ KV ++P GS  A+G  
Sbjct: 522 QQRRGGKGVAGLHTSEDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTH 581

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NI+ L + E +TTI+   E     +N + +FAT+ G V+R+  S + +  R+G +A+ 
Sbjct: 582 IANIVPLEKEEWVTTILTVRE---FSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVG 638

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V+  T  + I+L T  G  +RF    +R   GR + GV+GI+L  GD V++
Sbjct: 639 LREDDELIMVKEVTNNDFIVLATAEGFAIRFSCEDVRNM-GRGAAGVKGIALRPGDSVVA 697

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             I+                                  K D+                  
Sbjct: 698 CLILQE--------------------------------KQDTPA---------------- 709

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             I+TVS  G+GKRTS   +R+  R GKGI    V++  + G ++   PV+D++ ++L++
Sbjct: 710 --IMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQ--KTGLVIGAKPVSDDNALVLLT 765

Query: 858 DKGTLIRVPVNEIRIASRATKGV 880
               +IR+ V+E+R A RAT GV
Sbjct: 766 STNKIIRMSVDEVRSAGRATMGV 788



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 8/139 (5%)

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++G  E  T+ +    +   ++    ++L   +  ++T+S +G+ KRT+   ++   R G
Sbjct: 468 VTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRGG 527

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           KG+     S+ +     V  F    N Q ++L ++KG + ++ V+++   SR  KG  I 
Sbjct: 528 KGVAGLHTSEDD----FVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIA 583

Query: 884 STA---KDERVVSVERIRE 899
           +     K+E V ++  +RE
Sbjct: 584 NIVPLEKEEWVTTILTVRE 602


>gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
 gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
          Length = 857

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/889 (42%), Positives = 540/889 (60%), Gaps = 81/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I +V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K Y 
Sbjct: 21  EQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKPYR 80

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA   G V+G+YHPHG+A++YDA+ R+AQD+S+R  L++G GNFGSVDGDPPAA RYTE
Sbjct: 81  KCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRYTE 140

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYD   QEP VL +R+PN+L NG  GIAVGMATNIP 
Sbjct: 141 SRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNIPP 200

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D    +IDNPD  LD +M+ I+GPDFPTG VI+GR GI+ AYATGR  + +R 
Sbjct: 201 HNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIMGRAGIRAAYATGRARLTLRA 260

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +  RE+IVVTEIPY VNKA ++E IA+LV++KRI  I+DLRDESDR G R+VI
Sbjct: 261 RTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMRIVI 320

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A V+LN+LY Y+ LQ    V M+AL G  P+   L  +L  ++ F+ E+V RR
Sbjct: 321 ELKRDANAQVVLNRLYSYSQLQDTVGVIMLALVGGVPKVMPLKDVLTHYIDFQGEIVTRR 380

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L +A++R H+L GL +   N DEV+ IIR S +   ++  L+ R            
Sbjct: 381 TKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIAR------------ 428

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           ++++Q  AI+ ++L +L+GL R  I  EL  +   +KE   IL 
Sbjct: 429 --------------FGITDIQATAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILG 474

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +R++ I+K+EL  ++ +    RRT IV    +++ ED I  ED V+T++H GY+KR P
Sbjct: 475 DYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVDIEDLIPVEDCVITLTHFGYLKRQP 534

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  YR QRRGG+G SG+  R+EDFV +LFI STH  ++FF+S G  ++ K + +  GS  
Sbjct: 535 VDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRT 594

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG  ++N+LS++  E++T ++    DE    +  +V  T+ G ++R  L  +  + R G
Sbjct: 595 SRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMG 654

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  DE+  V      +++++ TK G  +RF     R  + R + GV+ I+L  G
Sbjct: 655 LIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIRFDEQDARPLS-RTARGVKAITLEDG 713

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ MA V                     R  SG T                       
Sbjct: 714 DEVVGMARV---------------------RKESGAT----------------------- 729

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTVSE G G+RT    +R+ +R GKGIR   V K    G +  V  V+++D 
Sbjct: 730 -------LLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYVDK---NGPVAGVRMVDEDDD 779

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +I+++D G +IR+PV EI + SR   GV     +++ RVV++ R  + E
Sbjct: 780 VIIITDDGVIIRIPVREITVQSRYGGGVRAMRVSEESRVVTLARAPKEE 828


>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
 gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 811

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/894 (41%), Positives = 541/894 (60%), Gaps = 101/894 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   + G+   K + K A
Sbjct: 8   VLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPHRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G V+G+YHPHG+AA+YDA+ RMAQD+S+R  L++G GNFGSVDGD PAA RYTE RL
Sbjct: 68  NLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ KDTVDFRPNYD + QEPVVL AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 128 TALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+G + +++NP+  +D LM  I+GPDFPT  +I+G  G++ AY TGRGS+ +RG   
Sbjct: 188 TEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTRGMRQAYRTGRGSVTVRGRCE 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G R  IVVTEIPY VNKA ++E+IAELV+EK+I  I DLRDESDR+G R+V++++
Sbjct: 248 IEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRIVMDIR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  S  VILN+LYR T LQ  F + ++AL   +P+   L  +L  ++  R EV+ RRT++
Sbjct: 308 RDISPSVILNKLYRNTQLQDNFGITLLALVDGEPQVLNLKEMLNQYLNHRREVIRRRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  ARDR H++ GL IA+ NLDEVV IIR SP+ +TAR  LM R               
Sbjct: 368 DLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSR--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AI+E+RL +LTGL R+ +  E   L   I +  DIL    
Sbjct: 413 -----------FDLTEMQAEAIVEMRLRQLTGLERNKLEEEYRELVGRISDLEDILRRPE 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  IIK++L+ +K      RRT I E     E ED I  E +VVT+S+ GY+KR PLS 
Sbjct: 462 RVQAIIKEDLIDIKTRFGDKRRTEIREEDASFEAEDLIEEESIVVTLSNRGYIKRQPLST 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG +G  +R EDF TD+F+ +T +++LFF++ G VY  K +++P  S Q+RG
Sbjct: 522 YRSQRRGGKGVTGTAIRSEDFATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEASRQSRG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             +IN L LN GE++ T++     ++     ++V AT+ G V++  + +F QI RSG IA
Sbjct: 582 TPVINFLRLNPGEKVNTVISVNRFDAGQ---HLVMATRTGMVKKVPIDEFRQIRRSGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L ++DE++ V+   + + ++L T  G  + F    +RV  GR + GVRGISL +GD+V
Sbjct: 639 INLRNQDELVGVQKIYKGDRLVLVTGRGYSIVFDEGDVRVM-GRGAAGVRGISLEQGDKV 697

Query: 736 ISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           I +        ++L  +  Y +R                     TSL             
Sbjct: 698 IDIDKYKEGADMLLVTERGYGKR---------------------TSL------------- 723

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAVFPV 847
             QEL+L++                        R GKG++   +S K  E+    AVFP 
Sbjct: 724 --QELRLQK------------------------RGGKGLKTIQISEKTGELVGGKAVFP- 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              ++ + ++  G +IR+ V+++    R ++GVV+     ++ +VS+ R +  +
Sbjct: 757 --KEEFVALTGAGFVIRLKVDDVPRQKRYSRGVVVMRCEDNDHIVSIARFKSED 808


>gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 809

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/894 (41%), Positives = 561/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R+++VVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +    +   Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SGK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R   GR++ GV+G++
Sbjct: 632 GKSGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M     +D  Y   +C  ++   +R  I                      E
Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++ K   + +LT              ++++ ++G+               +V +  VN
Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTEKTGR---------------IVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ V++I +  R T+GV +     D  +V S+ RIR  E
Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVDE 809


>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 869

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/889 (41%), Positives = 534/889 (60%), Gaps = 54/889 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q   +  LL D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG VA+I N +I    LM+ + GPDFPTGA ILG + IK AY TGRGS+ +RGV+
Sbjct: 188 LGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSVTMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   +RE I++TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+
Sbjct: 248 TIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQS F  NM+AL   +P+  TL   L  F+ FR   + 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGEPQLLTLKNFLSVFLDFRIATIN 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA +R H+L GL IA+++LD ++  IR + +  +A+ EL+            
Sbjct: 368 RRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELI------------ 415

Query: 431 IDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          T Y LSEVQ  AIL+++L RLT L  D IR E   L ++I +  D
Sbjct: 416 ---------------TNYGLSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADLQD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL  R R+L II+ E+  +K +  TPRRT I     D++D D I  E +++ ++  GY+K
Sbjct: 461 ILDRRERVLEIIETEVTQIKTQFATPRRTIITHAEGDIDDIDLIANEKVLILLTKQGYIK 520

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ + AQ R  +G++G  ++D+D +        H SVLFFS  G VY  + +++PIG
Sbjct: 521 RMPVNTFEAQSRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIG 580

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++  L  F  I 
Sbjct: 581 SRTSRGTPIVQMLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTALEAFSNIR 637

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
            +G IA+ L+  D++  V     E+ I++ ++ G  + F  +  ++   GR + GV+ + 
Sbjct: 638 ANGLIAISLEEGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMK 697

Query: 729 LAKGDQVISMAIVLHA---DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+++ M I+  A     D +      +           +    T+   +S+  G  
Sbjct: 698 LKPGDELVGMDILPAAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNSTG-- 755

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++L ++  G+GKR     FR+ NR+G+G+ AT          L  + 
Sbjct: 756 ------------PWVLVITMGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDKLATLR 803

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            VN +++I++ +++G +IR  VN I + SR+  GV +    +D+ +  V
Sbjct: 804 IVNSDEEIMMATNRGIIIRQTVNAISVQSRSATGVRVQRLDEDDAITGV 852


>gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
 gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
          Length = 802

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/729 (47%), Positives = 490/729 (67%), Gaps = 37/729 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + IT+EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  ++ + K A
Sbjct: 4   VIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+ +YHPHG+A +YDAL R+AQD++ R  L++G GNFGS+DGD PAA RYTE RL
Sbjct: 64  YIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+ KDTVDF PNYDG+ QEP VL +R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 124 SRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +A+IDNPD+ L+ LM  + GPDFPTG +ILGR GI+ AYATGRG IV+RG + 
Sbjct: 184 GEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIILGREGIRTAYATGRGGIVVRGKAT 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G+R  IV+TEIPYQVNKA +LE+IAELV+EKR+  +ADLRDESDR G RVV+ELK
Sbjct: 244 IER-KGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   VILN+LY++T L+  F V M+AL   +PE  +L  +++ ++  ++EVVVRR +Y
Sbjct: 303 RDADPQVILNRLYKHTQLEETFGVIMLALVNGQPEVLSLKEMMRHYLNHQKEVVVRRCQY 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ R  V+ GL +AV N+D VV++I+ +P+  TA+  L+                 
Sbjct: 363 ELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLIS---------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+E Q +AIL++RL RLT L R+ +  EL  L  +I     +L+  +
Sbjct: 407 ----------TFGLTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEA 456

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++ GI+K+EL ++K+    PRRT IV+  +    ED I  E +VV +SH GY+KR   S+
Sbjct: 457 KVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSL 516

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q RGG+G +G+ ++D DFV  L++ +TH  +LFF+S G V++ KV+ +P      RG
Sbjct: 517 YRSQHRGGRGVTGLKLKDGDFVRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRG 576

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            AL N+L L+  E++T I+P   F ED+      YV+  T+ G V++  L +   I R G
Sbjct: 577 TALPNLLQLSPEEQVTAIIPVADFSEDK------YVLLVTRQGVVKKLPLGELANIRRVG 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE+++      E ++LL T+ G+ +RF  + +R   GR + GVRG+ L  G
Sbjct: 631 LNAISLDPGDELVAAALPGPEEEVLLVTEGGKAIRFRAAEVRPM-GRAARGVRGMKLRPG 689

Query: 733 DQVISMAIV 741
           D+V  +A++
Sbjct: 690 DRVAGLAVL 698



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 747 DYDERICYMKHMSAQRRLISGDT-EEITSLKN---DSSVEGNISEE---RCQELKLKEQF 799
           +  E+I Y++ + A    + G   EE+ +LK    D      + EE   R ++L   EQ 
Sbjct: 440 ELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQV 499

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ +S +G+ KR     +R  +R G+G+      K+ +   +  ++  N +D ++  +  
Sbjct: 500 VVLLSHQGYIKRQDKSLYRSQHRGGRGVTGL---KLKDGDFVRHLYLANTHDYLLFFTSA 556

Query: 860 GTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSV 894
           G + R+ V EI  A RA +G     +   + +E+V ++
Sbjct: 557 GRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQVTAI 594



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV-VMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           V+ V+  GY KRV  + +  Q RGG G + + V +    V  + +V     +L  S+ G+
Sbjct: 704 VLLVTAGGYGKRVKTADFPLQGRGGMGVTALAVSKTSGPVVGVEVVRDEEEILLASAAGW 763

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           + + KV  +P+   QARG   + ++ L   +R+  +    ED
Sbjct: 764 LTRLKVKEVPVMGRQARG---VVLMRLQPEDRLVALAKIGED 802


>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
 gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 809

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/894 (40%), Positives = 562/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ +         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+IV+    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIVQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +    +   Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R   GR + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M     +D  Y   +C  ++   +R  I                      E
Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++ K   + +LT              +++++++               G++V +  VN
Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKT---------------GSIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D+D+I++ S +G  IR+ V+++ +  R T+GV +     D  +V S+ RI+  E
Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809


>gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
 gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
          Length = 923

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/723 (46%), Positives = 480/723 (66%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V++ D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LIR  V +IR   RA  GV + +  + E +VS+
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPAYGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686
            +++ F PE E S  +L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+ ++++
Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ ++S+
Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890


>gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 809

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/894 (40%), Positives = 566/894 (63%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I++TE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++E++
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+QR         
Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++VQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FKFTDVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ VVT++H GY+
Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVVTLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R++DFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ +++ E+IT  M   +    +   Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQISKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV  GR + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVM-GRLAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD ++ M     +D  Y   +C  ++   +R  I                      E
Sbjct: 691 LEEGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++ K   + +LT              +++++++GK               +V +  VN
Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKTGK---------------IVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           D D+I++ S +G  IR+ ++++ +  R T+GV +     +D RV S+ RI+  E
Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIRVSSIARIKAEE 809


>gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7]
          Length = 830

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/898 (41%), Positives = 555/898 (61%), Gaps = 97/898 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  NELGLTSKVAYKKSARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+ +LD ++E I GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-HKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIEELNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+   F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYERQNRGGKGKLSGSTYEDDFIESFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+++P  +  A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+
Sbjct: 570 LKVYKIPEANRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717
           R  LS+F      G  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   
Sbjct: 625 RTNLSEFGSNRSCGIRAIVLDEDDELVSAKIVDKNAKHLLIASHSGTFIKFPLENVREM- 683

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRGI L + D V+S A+V+  D++                              
Sbjct: 684 GRSTHGVRGIKLNENDFVVS-AVVISDDSNK----------------------------- 713

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L+VSE G GK+T +  +R   R GKG+    ++K  +
Sbjct: 714 ----------------------LLSVSENGLGKQTLAEAYREQARGGKGVIGMKLNK--K 749

Query: 838 IGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G LV+V  V+D N  +++++    +IRV + +IR   R   GV +  TA  ++VV V
Sbjct: 750 TGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDTA--DKVVYV 805


>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 830

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/827 (43%), Positives = 532/827 (64%), Gaps = 52/827 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DEM+NSY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M + G+ ++K Y K A
Sbjct: 30  IVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKEAGMTYDKAYKKSA 89

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD+L RM Q++SLR  LI+GQGNFGS+DGD  AA RYTE R+
Sbjct: 90  RVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDGDSAAAMRYTESRM 149

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + ++ +L D+ K+TV +RPNYDGS +EP VL AR PN+L+NG  GIAVGMATN+  HNL
Sbjct: 150 DRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGIAVGMATNMAPHNL 209

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +I++P+  + +LMEI++GPDFPTG VILG  GIK+AY TGRG I IR V+ 
Sbjct: 210 GEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVILGHQGIKSAYETGRGPIKIRAVTS 269

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+   D+++IVV+E+PYQVNK+ ++E IA LVREK+IV I+DLRDESDR G RV IEL 
Sbjct: 270 IEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDESDRDGIRVSIELT 329

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  + +VILNQLY++T +Q+ F +  +AL    P   TL  +L+ ++  R +V+++R+ +
Sbjct: 330 RNTNPEVILNQLYKHTQMQTTFGIINLALVDNIPRELTLKELLQIYLEHRIDVILKRSMF 389

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            + KA ++AH+L GL IA+ ++DEV+ +IR S   + A+  LM R               
Sbjct: 390 DMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTR--------------- 434

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L EVQ +AIL++RL +LTGL R  I +E   L   I++  DI+ S  
Sbjct: 435 -----------FGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIESDE 483

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   IIK+EL ++++     RRT I    ++ EDED I  E+++VT+++ GY+KR+P+  
Sbjct: 484 RKYSIIKEELHAIRERFADKRRTEITGSHVEFEDEDLIPVEEVIVTITNSGYIKRMPVDT 543

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG  G+  +++D V D+FI STH  ++FF++ G V+ +KV+ LP GS Q++G
Sbjct: 544 YSQQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKKVYGLPEGSRQSKG 603

Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+L L + E +T   T+  F ED+      ++  AT+ G V++  LSDF  + ++G
Sbjct: 604 KAVVNLLDLAENESVTATITVKEFEEDK------FLFMATRMGTVKKTPLSDFSNVRKAG 657

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+KLD  DE+++V       +I++ ++ G+ +RF    +R   GR + GVRG+ L   
Sbjct: 658 IIALKLDEGDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPM-GRTARGVRGMRLTGD 716

Query: 733 DQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D V+S+ IV          +  Y +R  + ++    +R   G    +TSL+N   +    
Sbjct: 717 DIVVSLDIVDLSTKLLTITENGYGKRTTFDEY-RGMKRGGQGVITIVTSLRNGPVIN--- 772

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                + +K +++ ++T SE G   R    D R   R+ +G++  +V
Sbjct: 773 ----VKAVKEEDEVMVTSSE-GIFIRIPVKDIRAQGRNTQGVKIMNV 814



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 652 TKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R    ++  + R G+  I +    R+  +++V+   +E+++++T+  G  +R 
Sbjct: 735 TENGYGKRTTFDEYRGMKRGGQGVITIVTSLRNGPVINVKAVKEEDEVMVTSSEGIFIRI 794

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           P+  IR   GRN+ GV+ +++  GD+V+ +A
Sbjct: 795 PVKDIRA-QGRNTQGVKIMNVRPGDKVVGVA 824


>gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684]
 gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684]
          Length = 883

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/910 (41%), Positives = 547/910 (60%), Gaps = 93/910 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D+     I   ++ +EM+++YL YA++VI+GRA+PD+RDGLKPVHRR+LF M +MGV+
Sbjct: 3   ATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMGVQ 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+   K +RI GEVMGKYHPHG+A+IYD L RMAQD+S+R LL++GQGNFGSVD DP A
Sbjct: 63  PNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDPAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + A  +L D+  DTVDF PNYDG  QEP+VL AR+PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E +   +A I+NP+ID+D LM+ IRGPDFPTG +ILG  GI++AYATGRG
Sbjct: 183 ATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTGGIILGVGGIRDAYATGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA---MLEKIAELVREKRIVDIADLRDES 303
            + ++  +HIE  S  +E IVVTE+PYQV K     +++KIA+LV EK+I +I DLRDES
Sbjct: 243 RVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLRDES 302

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R VIELKR     V+LN+LY++T +Q+ F VNMVAL    P+  +L  ++  +V 
Sbjct: 303 DRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVDNVPKTLSLREVIGRYVD 362

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+VRRTKY L +A DRAH+L GL IA AN+DEV+ IIR S + E AR  L+ R   
Sbjct: 363 HQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVNR--- 419

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q  AIL++ L RLT L  D +R E   L   
Sbjct: 420 -----------------------FELSERQAEAILQMTLGRLTALEVDKLRQEHADLMER 456

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVT 541
           I+E  +IL    R + IIK+EL  + D     RRT I   EG +D+ED   I  + MV+T
Sbjct: 457 IRELREILGDEDRQMAIIKEELQEISDAYGNERRTAISYAEGEIDIED--LIADQQMVIT 514

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GY+K +PL+ YR QRRGG G +G+ M+D D++  LF+ STH  +LFF++ G VY+ 
Sbjct: 515 ITKTGYIKSLPLATYRQQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRS 574

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP  S  A+G+AL+NIL L +GER+ +++   +   +    Y++FAT+ G V++ +
Sbjct: 575 KVYELPEASRTAKGRALVNILPLREGERVQSVLSTRDFSEAP---YLLFATRKGTVKKTE 631

Query: 662 LSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           L  +   I   G IA+K+   DE+++V    + +++++ ++ G  VRF     R   GR+
Sbjct: 632 LQAYNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSM-GRD 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ +    +VI+M I                                   ++D  
Sbjct: 691 TSGVRGMDVGDSGEVIAMDIA----------------------------------RDDQD 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +                  ++T +  G   R   Y  R + R  KG+R   +++    G 
Sbjct: 717 L-----------------LVITENGFGKRTRIDEY--RKTARGAKGVRTIRLTEAR--GG 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L     V ++ +++ +S  G + R  V  I    RA++GV + +  +D+ V ++  + ES
Sbjct: 756 LAGALVVREHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIALVVES 815

Query: 901 EIVDEAESTE 910
           +  +  E+ E
Sbjct: 816 DTAEADEALE 825


>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
 gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
          Length = 809

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/887 (41%), Positives = 539/887 (60%), Gaps = 100/887 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K ARI 
Sbjct: 9   INIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DPPAA RYTE RL + 
Sbjct: 69  GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEARLAQI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 129 AEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
                 +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +HI +
Sbjct: 189 CQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              +R+ I VTEIPYQVNKA ++ KIAELV++++IV I+DLRDESDRQG RVVIELKR A
Sbjct: 249 VD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIELKRDA 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR+++ L 
Sbjct: 308 EPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFELK 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            A+DRAH+L GL  A+  +D ++ IIR S N +TAR+ L+                    
Sbjct: 368 AAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLV-------------------- 407

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      S +Q +AIL+L+L RL  L R  I +E   L   I    D+LS   ++ 
Sbjct: 408 ------AEFDFSVIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIY 461

Query: 499 GIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            ++K++   +K     PR T I  +G+++   ED +   D++VT+S  G++KRVP +V+R
Sbjct: 462 ALVKEDAKDLKGSYGQPRATEISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFR 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGK 616
            Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P  + + A+G 
Sbjct: 522 LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGT 581

Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           A++N++ + Q ERIT I+    FP D       +++ AT  G +++  L +F  +  SG 
Sbjct: 582 AIVNLIPVTQDERITAILDLKSFPADH------FLLMATNKGEIKKTSLQEFTAVRSSGL 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAM L + DE+++    T+E DILL T++GQ +RFP+S +R  + R S GV+ I L+KGD
Sbjct: 636 IAMDLATSDELVAAVETTEEKDILLATRMGQSIRFPVSELRT-SLRASGGVKAIVLSKGD 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM                                       D + EG +        
Sbjct: 695 EVVSM---------------------------------------DVAQEGTL-------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++TV+E G GK T+  ++   +R+G G+   +   +++ G +VA   V++ DQ+
Sbjct: 708 ------VITVTENGAGKLTAIEEYPQQHRAGSGV--INFKVVDKTGEVVASKVVSETDQM 759

Query: 854 ILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSV 894
           +L+S  G + R  V E      I I  RAT+GV +    + +RVV+V
Sbjct: 760 MLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           + F+L  + KG  K+TS  +F     SG  + A D++  +E   LVA     +   I+L 
Sbjct: 607 DHFLLMATNKGEIKKTSLQEFTAVRSSG--LIAMDLATSDE---LVAAVETTEEKDILLA 661

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  G  IR PV+E+R + RA+ GV     +K + VVS++  +E  +V
Sbjct: 662 TRMGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQEGTLV 708


>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
 gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
          Length = 852

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/874 (42%), Positives = 533/874 (60%), Gaps = 66/874 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    ++ EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LIEG GNFGS+D DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  + + LL D+  +TVDF   +DGS QEPVVL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+I NP+I    LM+ I GPDFPTG  ILGR+GIK+AY +GRGSI +RGV+
Sbjct: 188 LGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQILGRSGIKDAYISGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DR+ I+VTE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR G R+
Sbjct: 248 EIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY+ T +Q+ F  NM+AL   +P+   L   L  F+ FR +V++
Sbjct: 308 VIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGEPQILNLKDFLGVFLEFRVQVII 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA +R H+L GL +A+ANLD ++++IR + +  +A+REL+++          
Sbjct: 368 RRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQ---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ  AIL+++L RLT L  + I+ E   L  +I +  DI
Sbjct: 418 ----------------FGLSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIADLTDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+  II++EL  +K    TPRRT+IVE    + D D I  E  V+ ++  GY+KR
Sbjct: 462 LQRRERVDQIIQEELTQLKSTHATPRRTQIVEEEGGIVDIDLIANEQAVILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ +  Q R  +G+SG  ++++D V        H  +LFFS  G VY    +++P  S
Sbjct: 522 MPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSS 581

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ARG  ++ +L + + E+IT+++    F ED+      Y+V  T+ G +++  LS +  
Sbjct: 582 RTARGVPIVQMLPIPKDEKITSMVAVSEFTEDQ------YLVMLTRQGYIKKTALSAYAN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L   D++  V    +E+ I++ T+ G  + F     ++   GR + GVR 
Sbjct: 636 IRANGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVRS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++IS+ I                 +  Q     G +E+      D ++E   S
Sbjct: 696 MKLKGTDEIISVDI-----------------LPGQVVANIGTSEDEIE---DENLE---S 732

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           EE   E      ++L ++  G+GKR     FR+ NR+G G++A      N    L A+  
Sbjct: 733 EELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRFK--NAQDQLAAIHI 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           VN  D++++V+ +G +IR  V+ I   SR   G+
Sbjct: 791 VNQEDEMMIVTSRGIIIRQAVDAISPQSRMATGI 824


>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
 gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
          Length = 824

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/895 (42%), Positives = 549/895 (61%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  +K + K A
Sbjct: 8   LLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPFKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+
Sbjct: 68  RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF PNYDG  +EP V+ AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           GE +D   A++DNPDI +  LM+  I GPDFPTG +ILGR GI+ AY TGRGSI+IR   
Sbjct: 188 GETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMILGRAGIRQAYETGRGSIMIRCKH 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+E+    + +IVVTE+PYQVNKA ++ KIA+LVREK+I  I  L DES+R+G R+VIEL
Sbjct: 248 HLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++    DV+LNQL+R TSLQ+ F VNM+AL+   P++  +  +L  ++  + +V VRRTK
Sbjct: 308 RKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRSPKQMGIKELLGHYIDHQIDVTVRRTK 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA DRAH+L GL IA+ ++DE++ IIR S N   AR  LM+               
Sbjct: 368 YDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLME--------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AILE+RL RLTGL RD I NE   L   I +  DIL++ 
Sbjct: 413 -----------NFELSEIQANAILEMRLRRLTGLERDKIENEYQELLALIIDLKDILANH 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+L II+ EL  VK++    RRT I +   DM+DED I  ED+V+T++  GY+KR+P  
Sbjct: 462 DRVLQIIRDELTEVKNKYGDERRTEISDADYDMQDEDLIPVEDIVITMTTNGYIKRMPTD 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGG+G  G+ + ++D V  L  +STH  +L F+++G VY+ K +++P  S  A+
Sbjct: 522 TYHTQNRGGRGIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L+L++ E++  ++P   D  +    Y++F TK+G V+R   ++F  I ++GKI
Sbjct: 582 GLPVVNLLNLDKDEKVKALVPMKVDHEAE---YLMFVTKNGLVKRVPSAEFASIRQNGKI 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+  T +++I++                  AG N   VR         
Sbjct: 639 AITLREGDELVGVKETTGDDEIII------------------AGSNGKAVR--------- 671

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                   H D            +    R  SG    +     D +V   ++  R     
Sbjct: 672 -------FHEDG-----------VRPMGRSASG----VKGFNVDGAVVVGMATSR----- 704

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L VSE G+GKRT+  ++R++ R  KG++  +++   + G LV+V  VN ++  +
Sbjct: 705 -DGTHLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITP--KTGDLVSVRAVNGDEDAM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +V++ G +IR+ V++I I SR T+GV + + A+ E V  V  + +    +EA+ T
Sbjct: 762 IVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQ--AEEAKDT 814


>gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
 gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
          Length = 910

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/933 (39%), Positives = 559/933 (59%), Gaps = 91/933 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++  +  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+    
Sbjct: 2   EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R  L +GQGNFGSVDGD  AA R
Sbjct: 62  NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG  GIAVGMAT 
Sbjct: 122 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  VA ID+PDI++D LM+ +  PDFPTG +I G  G+  AY TGRG +V
Sbjct: 182 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ +VVTE+PYQVNK+  +E+IA+ VR++RI  IADLRDESDR G R
Sbjct: 242 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA+A+++ NQ+Y+++ LQ  F VNMVAL G +P+  TL   ++ +V  R E+V
Sbjct: 302 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ---------- 419
           VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+  TAR+ L            
Sbjct: 362 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 421

Query: 420 --RSWN--------ASDIKDLIDLIDDSSY---TIGSDGTMYLSEVQTRAILELRLARLT 466
             R+ N        A + +D +  +    Y       D   +L+E Q  AIL LRL+RLT
Sbjct: 422 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 481

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLL 525
           GL R+ I  E   +  +I+E   IL+SR R + +IK+ELL+VK+  D  RRT I   G  
Sbjct: 482 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 541

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I R+ +VVT+++ G  KR P+  YR Q RGG G  G   R++DF+  L++  +
Sbjct: 542 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 601

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDES 641
           H  +L F+  G  +  + + +P G   A+G+++  ++ ++  +R+  ++       EDE+
Sbjct: 602 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 661

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             N+ YV+ AT+ G V++  L  + +   +G I +K+D  D+++       +N +++ + 
Sbjct: 662 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 721

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ----VISMAIVLHADADYDERICYMKH 757
            G+ V F     R   GRN+ GVRG+ L  GDQ    +IS+   +H D D          
Sbjct: 722 GGRAVHFDEGDARPM-GRNTRGVRGMELP-GDQELVGMISVPPAMHDDLD---------- 769

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     +L ++E G+GKRT+  D+
Sbjct: 770 ------------------------------------------VLAIAEHGYGKRTALSDY 787

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+  R GKG+    +++ +  GALV++  V  ++ ++++++ G +IR  V EI    R T
Sbjct: 788 RVQGRGGKGL--ITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNT 845

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +GV +      + +  V R+ ++   DE E+ +
Sbjct: 846 QGVQVIDLKDGDAIADVTRVADT---DEPEADD 875


>gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
          Length = 828

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/904 (41%), Positives = 560/904 (61%), Gaps = 96/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 RSEDRLNGVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV G
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+   +                        ISGD              GN  
Sbjct: 694 IRLNENDFVVGAVV------------------------ISGD--------------GN-- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  
Sbjct: 714 ------------KLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D N  +++++    +IRV + +IR   R   GV + +TA  ++VV V    + E  + 
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCPKEEEPEN 817

Query: 906 AEST 909
            E++
Sbjct: 818 LETS 821


>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
 gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
          Length = 827

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/915 (40%), Positives = 564/915 (61%), Gaps = 100/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  +
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIES 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEERLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SISYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+++P  S  A GKA++N++SL   E+I   +   +  DE S     + F TK G V+
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKKGVVK 624

Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
           R  LS+F   NR  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R 
Sbjct: 625 RTNLSEFGS-NRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVRE 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV+GI LA+ D V+  A+V+  D +                            
Sbjct: 684 I-GRTTRGVKGIRLAENDFVVG-AVVISDDGNK--------------------------- 714

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L+VSE G GK+T +  +R  NR GKGI    +++ 
Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQ- 749

Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + G LV+V  V+D N  +++++    +IRV + +IR   R   GV + +TA  ++V+ V
Sbjct: 750 -KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYV 806

Query: 895 ERIRESEIVDEAEST 909
               + E  +  E+T
Sbjct: 807 NSCPKEEEPENLENT 821


>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 814

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/891 (42%), Positives = 525/891 (58%), Gaps = 88/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I SV I ++M+ +YL YA++VI+ RA+PD RDGLKPVHRRIL+ M  MG+  N  Y K A
Sbjct: 6   IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ARMAQD+S+R  LI+GQGNFGS+DGD PAA RYTE RL
Sbjct: 66  RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  N+DG+ +EPVVL AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185

Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV      +I+N     DI  + LM II GPDFPTG +I+GR GI + Y+TGR  + +R
Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIVGREGILHGYSTGRSRLTVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV+ IE+  G R  I++TEIPYQVNKA ++E+IAELVRE ++ +I+DLRDESDR G  +V
Sbjct: 246 GVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RGA    +LNQLY+YT LQS FSVNM+AL   +P    L   L+ F+  R+EV+ R
Sbjct: 306 IELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNEPRLLPLKRALQVFIQHRQEVLTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KAR RAH+L GL IA+ANLD V+ IIR SP+ ETAR+ L++R           
Sbjct: 366 RTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIER----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ +AIL+++L RL  L R  I +E   +   I    D+L
Sbjct: 415 ---------------FKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++  ++L +I+ ++  + ++    RRTRI  E   D  +ED +  E +++T++  GY+KR
Sbjct: 460 ANPRKILALIQTDMKELAEKYGDNRRTRIAAEAKEDFSEEDLVADEAVLITLTARGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V  S YR Q RGGKG  G  +++ED +T +    T  ++LFF+  G VY +K  ++P   
Sbjct: 520 VNASAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAG 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              +G   IN+L+L   ERIT  +      S  +  Y + AT +G V+R  LS+F  +  
Sbjct: 580 RTDKGIPAINVLALEANERITVAVAV---RSFADARYCLMATVNGKVKRVDLSEFESVRP 636

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L++ D++  V        +LL T+ G  VRF  S +R   GR + GV GISL 
Sbjct: 637 SGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESEVRSM-GRQASGVTGISLR 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G                 +R+  M                            +I EE  
Sbjct: 696 EG-----------------DRVASM----------------------------DIVEEGG 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V+ KGFGKR    +F +  R+  G+ A D   I + G L     V +N
Sbjct: 711 G--------LLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVVQEN 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D++ L S  G  +RV V+ I    R  +GV I    + + V S+ RI + E
Sbjct: 763 DEVALFSASGVALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIARIPQEE 813



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VKRV LS + + R    G   + + + D +  + +      VL  +  G+  +     
Sbjct: 621 GKVKRVDLSEFESVR--PSGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESE 678

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +     QA G   +  +SL +G+R+ + M   E+        ++  T  G  +R +L +F
Sbjct: 679 VRSMGRQASG---VTGISLREGDRVAS-MDIVEEGGG-----LLLVTTKGFGKRVRLDEF 729

Query: 666 IQINRSGKIAMKLD----SRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRN 720
           +   R+    M LD    ++   L+V    QEND + L +  G  +R  +S+I  F GR 
Sbjct: 730 VLKGRAIGGVMALDHKAIAKTGKLAVARVVQENDEVALFSASGVALRVKVSSI-PFKGRV 788

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA 746
           + GV  + L +GD V S+A +   +A
Sbjct: 789 AQGVSIMHLDEGDSVASIARIPQEEA 814


>gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
 gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
          Length = 851

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/906 (39%), Positives = 549/906 (60%), Gaps = 91/906 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV     +
Sbjct: 3   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVDF+ N+D + QEP V+  + P +L+NG  GIAVGMATN+ 
Sbjct: 123 EARMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A IDN DI++D L+  I+ PDFPTG +I G  G++ A+ TGRG IV+R
Sbjct: 183 PHNLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+ +G RE I+VTEIPYQVNKA M++  A+LV +K+I  I+++RDESDR G RVV
Sbjct: 243 AKVGFEEVNG-REAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELKR A  +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  FV  R +VVVR
Sbjct: 302 YELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIYHFVEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L KA +RAH+L GL IA  N+DEV++IIR S + + AR  L++R           
Sbjct: 362 RAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +R E   +   I    ++L
Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLEQDKLRAEYEEIMKLITYLKELL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S+   + +IK EL  ++D+    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ASKEMRMQVIKDELAEIRDKYGDERRSQIEYSGGDVSIEDLIADESVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     RD+DF+  LF+ + H  +++F+  G  Y  +V+ +P G+ 
Sbjct: 516 SLSEYKTQNRGGVGQKSAGTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  D+    +  ++  TK G V++  L  + +  
Sbjct: 576 ASKGRAIQNLINIESDDKVKAFICTQDLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +     + +L+  K G+ VRF     R   GR + GVRGI+L
Sbjct: 636 VNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPM-GRTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A + D+VI +  V   D +                                         
Sbjct: 695 ADENDEVIGIVTVNKEDVN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALV 842
                   E  IL V+E G+GKRT   +      +RI+NR GKG++  ++++  + GAL+
Sbjct: 714 --------ETQILVVTENGYGKRTKLVEEDGVDVYRITNRGGKGVKTLNITE--KTGALI 763

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESE 901
           A+  V D+D +++++  G  IR+ V+++R+  RAT+GV + +   ++ + +V ++ RE E
Sbjct: 764 AINNVTDDDDLMIINKSGLTIRMMVSDLRVMGRATQGVKLINIKGNDSIAAVTKVLREDE 823

Query: 902 --IVDE 905
             ++DE
Sbjct: 824 EIVLDE 829


>gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 811

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/884 (40%), Positives = 546/884 (61%), Gaps = 88/884 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTVFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L   +++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++ +  RRT I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQR
Sbjct: 463 MKKELLELKEKYNDKRRTTIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGRGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           I++L++GE++   +   E  S      VVF TK+G +++  L +F  IN SG IA+K   
Sbjct: 583 IINLSEGEKVRDTIVIKEFSSEKE---VVFITKNGLIKKTSLGEFKNINNSGLIAIKTKE 639

Query: 681 RDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D+I+ V   E   +E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD V+S
Sbjct: 640 DDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGDAVVS 697

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++ + + D                                                  
Sbjct: 698 AMLIKNPETD-------------------------------------------------- 707

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  VN++++++ ++
Sbjct: 708 --ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVNEDEELMCIT 763

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E
Sbjct: 764 SNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807


>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
 gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
          Length = 844

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/719 (47%), Positives = 480/719 (66%), Gaps = 30/719 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE      V I+ EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M  MG+  +K 
Sbjct: 3   EETARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A + GEVM  YHPHG+++IY+A+ RMAQD+++R +L+EGQGNFGSVDGDP AA RY
Sbjct: 63  FRKSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R  K A  LL D+ K+TVDF PNYDG  +EPVVL +R+PN+L+NG  GIAVGMATNI
Sbjct: 123 TESRFSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +A+IDNPDI +  LM+II+GPDFPT   ILG +GI+ AY TGRGSI++
Sbjct: 183 PPHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +I+VTEIPYQVNKA ++EKIAELVREK+I  I DLRDESDR+G R+
Sbjct: 243 RAKTQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R     V+LN L+++T +QS F VNM+AL   +P    L  +L  ++  +  ++ 
Sbjct: 303 VMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVIIR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A  RAH+L GL IA+ ++DE++ +IR S   E AR  LM+           
Sbjct: 363 RRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLME----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                  +Y+        LS  Q +AIL++RL RLTGL R+ I NE   L ++I E   I
Sbjct: 412 -------NYS--------LSYEQAQAILDMRLQRLTGLEREKIENEYQELMVKIAELRAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  +++  II+ EL  +K++    RRT I      +ED D I  ED+V+T++H GY+KR
Sbjct: 457 LADEAKIYAIIRDELGEIKEKFGDERRTEITFDENHIEDADLIPEEDVVITLTHDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S YR+Q+RGG+G  G+  +D+DFV  L+I ++H  ++FF+S G VY+ K + +P  S
Sbjct: 517 LPVSTYRSQKRGGRGVQGLGTKDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN++ + +GER++ ++P  E +      Y+ FATK G +++  L  +  I +
Sbjct: 577 RTAKGTPIINLIQIEKGERVSAVIPVKEFDQEH---YLFFATKKGIIKKTTLESYENIRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G IA+ L   DE++ V     +  I++ T  G  VRF    +R   GRN+ GV+GI+L
Sbjct: 634 GGLIAVNLREDDELIGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTM-GRNATGVKGITL 691


>gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102]
 gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102]
          Length = 923

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/723 (46%), Positives = 479/723 (66%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D     +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V++ D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LIR  V +IR   RA  GV + +  + E +VS+
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + ++++D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686
            +++ F PE E S  +L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+ ++++
Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ ++S+
Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890



 Score = 37.7 bits (86), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +VS    ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA-ATLVSETDDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            + + KV ++       R  A + +++L++GE + ++
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSL 890


>gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
 gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
          Length = 923

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/723 (46%), Positives = 480/723 (66%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V++ D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G LIR  V +IR   RA  GV + +  + E +VS+
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686
            +++ F PE E S  +L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+ ++++
Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ ++S+
Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +VS    ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA-ATLVSETDDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            + + KV ++       R  A + +++L++GE + ++
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSL 890


>gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279]
 gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279]
          Length = 806

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/880 (42%), Positives = 532/880 (60%), Gaps = 87/880 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+G  Q GV  ++K+VKCA
Sbjct: 4   VLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGK+HPHG+AAIYD L R+AQ W+LR  LI+GQGNFGSVDGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 LL DL K+TV F PNYDG+ ++P VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +IDNP++ L+ +M+++ GPDFPTGA  L R GIK AYATGRGS+ +R    
Sbjct: 184 GEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAK-LSRRGIKEAYATGRGSLKVRARVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +G R  +V TEIPYQVNKA ++ +IA LVR K I +IA LRDESDRQG R+ +ELK
Sbjct: 243 NEDKNG-RAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LN+LY+++ LQ+ F+VN++A+   +P+  TL+ +++ ++  R  VV +RT+Y
Sbjct: 302 RGANPQVVLNKLYKHSRLQTSFTVNLLAIVKGEPKVLTLLELMRHYLDHRGLVVRKRTEY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAHVL GL IA+ ++DEV+ +IR S +   AR  LM                 
Sbjct: 362 ELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLM----------------- 404

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                    G   L+EVQ +AIL++RL RL GL RD ++ E   L  EI     IL    
Sbjct: 405 ---------GRFSLTEVQAQAILDMRLQRLVGLERDKLQAEYRELMEEIGRLEAILGDEK 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  +++ ELL++KD+    RRT+I E       ED I  E MV+T++  G+VKR PL  
Sbjct: 456 RLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      ++ED    +F+ S H ++L F++ G VY EKV  LP  S QARG
Sbjct: 516 YRAQGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++++L L +GE +  ++   +        Y VFATK+G +++ ++ ++  ++ +G IA
Sbjct: 576 THIVSLLPLQEGEEVAALLNVRDLTQEG---YFVFATKNGLIKKTEIKEYQNLSSAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--D 733
           + L   D ++ V    + + ++L T+ GQ +RF +S +R   GR S GV GI   +G  D
Sbjct: 633 INLLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRA-TGRASQGVTGIRFKEGRDD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ I                       L  G+  E                      
Sbjct: 692 RVVSLVI-----------------------LPKGEESE---------------------- 706

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V   G+GKRT   ++ +  R G G+   + ++  ++G L A+  V  N+ +
Sbjct: 707 ------VLAVGSHGYGKRTPISEYPLQGRGGMGVITFNTNE--KVGQLAALMRVQGNEDL 758

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +++S +G  IR  V+ I    RAT GV + + +  + + S
Sbjct: 759 LVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKDEIAS 798



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 54/261 (20%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
           K+G+ RR ++++F                +E  S+E   ++  +++T T  G   R P+ 
Sbjct: 471 KYGDQRRTQITEF----------------EEGFSLEDLIEDEPMVITLTSQGFVKRTPLE 514

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---------DYDERICYMKHMSAQR 762
           A R   GR  +G +     + D+ IS+ +    D           Y E++  +   S Q 
Sbjct: 515 AYRA-QGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQA 573

Query: 763 R-------LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           R       L   + EE+ +L N             ++L  +E + +  ++ G  K+T   
Sbjct: 574 RGTHIVSLLPLQEGEEVAALLN------------VRDLT-QEGYFVFATKNGLIKKTEIK 620

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +++  N S  G+ A +   + E  ALV V    + DQ++L +  G  IR  ++++R   R
Sbjct: 621 EYQ--NLSSAGLIAIN---LLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRATGR 675

Query: 876 ATKGV--VIFSTAKDERVVSV 894
           A++GV  + F   +D+RVVS+
Sbjct: 676 ASQGVTGIRFKEGRDDRVVSL 696



 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 119/277 (42%), Gaps = 30/277 (10%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVR 535
           + + L I ++R R+ G    EL     +    R T IV  L   E E+         + +
Sbjct: 545 MHDTLLIFTNRGRVYGEKVHELPEASRQ---ARGTHIVSLLPLQEGEEVAALLNVRDLTQ 601

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V  +  G +K+  +  Y  Q     G   + + + D +  + I      V+  +  
Sbjct: 602 EGYFVFATKNGLIKKTEIKEY--QNLSSAGLIAINLLENDALVGVAIAQEGDQVMLATQS 659

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSL----NQGERITTIMPFPEDESSWNNLYVVFA 651
           G     +  R  +   +A G+A   +  +     + +R+ +++  P+ E S     V+  
Sbjct: 660 G-----QAIRFELSDVRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESE----VLAV 710

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI--LSVETCTQEN-DILLTTKLGQCVRF 708
             HG  +R  +S++    R G   +  ++ +++  L+     Q N D+L+ ++ G  +R 
Sbjct: 711 GSHGYGKRTPISEYPLQGRGGMGVITFNTNEKVGQLAALMRVQGNEDLLVLSRRGNAIRT 770

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +S+I  + GR + GVR ++L+  D++ S  ++   D
Sbjct: 771 KVSSIAQY-GRATSGVRVMNLSDKDEIASAFVIAPQD 806


>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
 gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
          Length = 837

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/905 (40%), Positives = 557/905 (61%), Gaps = 95/905 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRI++ M+++    +K + KCA
Sbjct: 9   VHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L  D+ K+TVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++  V +ID+      +  ++ +++II+GPDFPTG +ILG  GI+ AY TGRG I +
Sbjct: 189 REVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+V+E+PY VNKA ++EKIAELVR+K+I  I DL D+S R+G RV
Sbjct: 249 RAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREGMRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R A+A+VILNQLY++T LQ  F V M+AL G +P+   L+ +L  ++  +EEVV 
Sbjct: 309 VIELRRDANANVILNQLYKHTQLQDTFGVIMLALVGNEPKVMNLMEMLNYYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S   + A+ ELM+R          
Sbjct: 369 RRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMERFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++VQ++AI+++RL  LTGL R+ +  E  +L  +I+    I
Sbjct: 421 ------------------LTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L ++D+    RRT I     D+  ED I RED+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEILVIRDKYGDERRTSIGFDEFDISMEDLIPREDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ RGGKG  G+   DED+V +LF+ +TH  ++FF++ G VY+ K + +P  S
Sbjct: 523 MSHDTFKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A++N+L L  GE+I+ ++P    E   ++ Y++ ATK G +++  + ++  + +
Sbjct: 583 RTSRGTAIVNLLQLMPGEKISAVIPI---EKYNDDEYLLMATKKGLIKKTPIKEYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+    ++D+ + TK GQC+RF  S +R   GR S+GVRG++L 
Sbjct: 640 TGLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRP-TGRTSMGVRGMNLV 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M I    D+   E +   ++   +R  I                         
Sbjct: 699 DRDEVIGMQI----DSQGTELLIVSEYGMGKRTSI------------------------- 729

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 ++F  T   +G GK    Y  +I+ ++G                +V V  V+++
Sbjct: 730 ------DEF--TAQNRG-GKGVKCY--KITEKTGN---------------VVGVKAVDED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-----ESEIVDE 905
           ++I++++ +G +IR+  + I    R T GV + +  + ++V  + ++R     E ++V+ 
Sbjct: 764 NEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIAKVRRGDESEDDLVEP 823

Query: 906 AESTE 910
            ESTE
Sbjct: 824 EESTE 828


>gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101]
 gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/907 (39%), Positives = 550/907 (60%), Gaps = 92/907 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV     +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  ++ D+ K+TVDF+ N+D +  EP V+  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G +A +DN DI++D LM  I+ PDFPTG +I G  G++ A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+  G RE I+VTEIPYQVNKA M+++ A+LV EK+I  IA++RDESDR G R+V
Sbjct: 243 AKVGFEEVEG-RESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A+ +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  F+  R +VVVR
Sbjct: 302 YILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQLLNLKDMIHYFIEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q RAI+E+RL +LTGL +D +R E + L   I+    +L
Sbjct: 411 ---------------FKLSDIQARAIVEMRLRQLTGLEQDKLRAEYDELMKLIEHLKALL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +  + +IK+EL  ++D+    RR++I     D+  ED I  E++V+T+SH GY+KR 
Sbjct: 456 ADVNLRIDLIKEELTEIRDKYGDDRRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     RD+DF+  +F+ + H  ++FF+  G  +  +V+ +P GS 
Sbjct: 516 NLSEYKTQNRGGVGQKSAGTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N++++   +++   +   +  D+   N   +V  TK G V++  L  + +  
Sbjct: 576 TAKGRAIQNLINIESDDKVKAFICTQDLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +    E+ I+L  K G+ VRF  +  R   GR + GVRGI+L
Sbjct: 636 ANGVAAITIKEGDELLEAKLTDGESQIILAVKSGKLVRFEETKTRPM-GRTASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+VI M                                 +T  KND          
Sbjct: 695 KDDTDEVIGM---------------------------------VTVGKND---------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALV 842
                 + +  IL V+E G+GKRT   D      +RI+NR GKG++  +++  ++ G L+
Sbjct: 712 ------VADSQILVVTENGYGKRTKLVDDDGEDVYRITNRGGKGVKTLNIT--DKTGKLI 763

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----R 898
           ++  V D+D +++++  G  IR+ + ++R+  RAT+GV + +    + + +V ++     
Sbjct: 764 SINAVTDSDDLMIINKSGLTIRMAIEDLRVMGRATQGVRLINLKGKDSIAAVTKVMKDDA 823

Query: 899 ESEIVDE 905
           E  +VDE
Sbjct: 824 EEVVVDE 830


>gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265]
 gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265]
          Length = 827

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/897 (42%), Positives = 547/897 (60%), Gaps = 90/897 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K A
Sbjct: 6   ILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K+TV++  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL
Sbjct: 126 KAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG  A+IDNPDI+++ LM+ +  PDFPTG +I G  G++ AY TGRG +VIR  + 
Sbjct: 186 REVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIYGYEGVRLAYTTGRGKVVIRARAL 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE IVVTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+VIEL
Sbjct: 246 VEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT+
Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQFYIQHRNEIVLRRTR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R              
Sbjct: 366 YDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q++AILE+RL RLTG+ R  I  E       I+E  DIL+S 
Sbjct: 412 ------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYAETIALIEELRDILASP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R + II+ ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 ERQMQIIRTELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   +++DF+  +F+ STH  +LFF+S G  Y  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVTGAQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G++L NI+ LN GE I T +     DE      +++ AT  G V++  L +F +  R+G 
Sbjct: 580 GRSLANIMELNPGETIKTYINIRNFDEPG----FIMMATADGIVKKTALEEFSRPRRNGI 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ +D+ D +L       ++ ++L    G  VRFP S +R   GR ++GV+GI+L +G+
Sbjct: 636 AAITIDTGDALLDARLTDGDHQVILAKSSGLVVRFPESQVRPM-GRTAMGVKGITLDRGE 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + ISM                                 +T+ + D++             
Sbjct: 695 KCISM---------------------------------VTTKRLDTA------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V++ GFGKR+   D+R++ R  +G+    +    +IGALV +  VND+D +
Sbjct: 709 ------LLAVTDNGFGKRSKVEDYRLTKRGARGV--ITLKAHEKIGALVGLLDVNDDDDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           I+++  G + R  V++IRI  R T GV +    + + V ++ R+ ++   DE   TE
Sbjct: 761 IIITSHGIVNRQHVSDIRITGRNTSGVRLVRLMEGDAVSALARVPKT---DEDTDTE 814


>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
          Length = 826

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/877 (41%), Positives = 545/877 (62%), Gaps = 87/877 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E    ++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A GKA++N++SL   E+I   +   +D S+  +L   F TK+G V+R  LS+F      
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLS-TKDFSNERSL--AFFTKNGVVKRTNLSEFGSNRSC 637

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV GI L 
Sbjct: 638 GIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIRLN 696

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  A+V+  D +                                           
Sbjct: 697 ENDFVVG-AVVISDDGNK------------------------------------------ 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND- 849
                    +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+D 
Sbjct: 714 ---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDDE 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           N  +++++    +IRV + +IR   R   GV + +TA
Sbjct: 763 NLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  +    + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 949

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/931 (39%), Positives = 558/931 (59%), Gaps = 91/931 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++  +  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+    
Sbjct: 41  EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 100

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R  L +GQGNFGSVDGD  AA R
Sbjct: 101 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 160

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG  GIAVGMAT 
Sbjct: 161 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 220

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  VA ID+PDI++D LM+ +  PDFPTG +I G  G+  AY TGRG +V
Sbjct: 221 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 280

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ +VVTE+PYQVNK+  +E+IA+ VR++RI  IADLRDESDR G R
Sbjct: 281 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA+A+++ NQ+Y+++ LQ  F VNMVAL G +P+  TL   ++ +V  R E+V
Sbjct: 341 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ---------- 419
           VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+  TAR+ L            
Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460

Query: 420 --RSWN--------ASDIKDLIDLIDDSSY---TIGSDGTMYLSEVQTRAILELRLARLT 466
             R+ N        A + +D +  +    Y       D   +L+E Q  AIL LRL+RLT
Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLL 525
           GL R+ I  E   +  +I+E   IL+SR R + +IK+ELL+VK+  D  RRT I   G  
Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 580

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I R+ +VVT+++ G  KR P+  YR Q RGG G  G   R++DF+  L++  +
Sbjct: 581 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 640

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDES 641
           H  +L F+  G  +  + + +P G   A+G+++  ++ ++  +R+  ++       EDE+
Sbjct: 641 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 700

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             N+ YV+ AT+ G V++  L  + +   +G I +K+D  D+++       +N +++ + 
Sbjct: 701 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 760

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ----VISMAIVLHADADYDERICYMKH 757
            G+ V F     R   GRN+ GVRG+ L  GDQ    +IS+   +H D D          
Sbjct: 761 GGRAVHFDEGDARPM-GRNTRGVRGMELP-GDQELVGMISVPPAMHDDLD---------- 808

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     +L ++E G+GKRT+  D+
Sbjct: 809 ------------------------------------------VLAIAEHGYGKRTALSDY 826

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+  R GKG+    +++ +  GALV++  V  ++ ++++++ G +IR  V EI    R T
Sbjct: 827 RVQGRGGKGL--ITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNT 884

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +GV +      + +  V R+ ++   DE E+
Sbjct: 885 QGVQVIDLKDGDAIADVTRVADT---DEPEA 912


>gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
 gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
          Length = 860

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/889 (39%), Positives = 544/889 (61%), Gaps = 89/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M++ Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 24  IKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS+R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 84  RIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSVDGDGAAAMRYTEARL 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  ++ D+ KDTVDF PN+D + +EP +L +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 144 TKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTTGIAVGMATNIPPHNL 203

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EVV+  V +IDN      + +++ +++II+ PDFPTG +ILG  G + AY TGRG +++
Sbjct: 204 REVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTRGAEEAYRTGRGKVIV 263

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +IVVTE+PY VNKA M+ KIAELV+ K++  I  LRDESDR+G RV
Sbjct: 264 RAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDGITALRDESDREGMRV 323

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+   + +++LN+LY++T +Q  F + M+AL   +P+  ++  +LK ++  +EEVV 
Sbjct: 324 VIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALVNNEPKVLSITEMLKHYIKHQEEVVT 383

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +R H+L GL IA+ N+DEV++IIR S     A+ +LM            
Sbjct: 384 RRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKEQLM------------ 431

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   L++VQ +AI+++RL  LTGL RD +  E   L  +I+E   I
Sbjct: 432 --------------GRFGLTDVQAQAIVDMRLRTLTGLERDKLEQEHADLLKKIEELKAI 477

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+I+ E+  + ++    R+++I +   D++ ED I   + V+ ++ LGY+KR
Sbjct: 478 LADRKVLLGVIRTEISEIANKYGDDRKSQIGQDDSDIDTEDLIPNVNTVIAMTSLGYIKR 537

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  ++AQ RGGKG  G+   D D+V D+ + +TH  V+FF++ G VY+ K +++P  S
Sbjct: 538 MSIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNTGRVYRLKAYQIPEAS 597

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A++N+L L  GE+I+ ++P    E     L++V  TK G V++  ++DF  + +
Sbjct: 598 RTSRGMAIVNLLQLAPGEKISAMIPVKGFEDEEKCLFMV--TKKGTVKKTPITDFSNVRK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+T T++ ++ L TK G C+ F  S +R+ + R+S+GVRG+ L 
Sbjct: 656 TGLAAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRITS-RSSIGVRGMMLD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+++ M +    D+                                            
Sbjct: 715 DTDEIVGMQLNTQGDS-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSEKG+GKRT+  +F    R GKG++   +++  + G ++ V  VND+
Sbjct: 731 ---------LLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITE--KTGNVIGVKAVNDD 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++I+++++ G +I++ ++EI I  R T GV + +  K   V  + ++RE
Sbjct: 780 NEIMMITNAGIIIQLRMDEITIHGRVTSGVKMINLDKGVTVAKIAKVRE 828


>gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
          Length = 831

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/887 (41%), Positives = 528/887 (59%), Gaps = 89/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V + DEMQ  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K A
Sbjct: 16  VIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++YDA+ R+AQD+S R L+++G GNFGSVDGDP AA RYTE R+
Sbjct: 76  RIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSVDGDPAAAMRYTEVRM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF PNYD S +EP VL A+ P +L+NG  GIAVGMATNIP HNL
Sbjct: 136 GKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSAGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD CV +ID+PD  ++ LM  ++GPDFPTGA ILG +GI+ AY TGRG + +R  +H
Sbjct: 196 GEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGLSGIRQAYTTGRGVVKVRAKTH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E    ++ +IVVTEIPYQVNKA ++E IA LV++K +  I DLRDESDR+G R+VIEL+
Sbjct: 256 VEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLRDESDRKGMRIVIELR 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
                +++LN+LY++T LQ  F + M+AL    P    L  IL+ ++  +++V+ R+ +Y
Sbjct: 316 SDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRILNLKQILEYYLDHQKDVITRKCRY 375

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA+ +LDEV+  IR S N E A+  LM++               
Sbjct: 376 ELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALMEKFG------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R  I +E   +   I    D+LS   
Sbjct: 423 -------------LSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEH 469

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +++GI +++LL VK      RRT IV    D+E ED I  ED+V+T+SH  Y+KR  L+ 
Sbjct: 470 KIMGIAREDLLDVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVITISHQSYIKRQALTN 529

Query: 556 YRAQRRGGKG---RSGVVMRDE-----DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +R Q RGG+G    SG +++++     DF   L + STH ++LFF++ G VY++K + +P
Sbjct: 530 FRNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIP 589

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  + N+L L + E++  ++      S     ++  AT  G V+R  +S+F  
Sbjct: 590 EASRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKS 649

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             + G IA+ L   +E++ V+  +  NDILL T+ G  + F    +R   GR S GVRGI
Sbjct: 650 ARKGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPM-GRTSHGVRGI 708

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL   D V+SM      D+  D                  DT E                
Sbjct: 709 SLRPHDSVVSM------DSCVD------------------DTGE---------------- 728

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTV++KG GKRT   ++R+  R GKGI    V+  +  G +V    +
Sbjct: 729 ------------VLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVT--DRTGLIVGSKFI 774

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           N+   I+L+S  G +IR+   +I    R  +GV +      ++V ++
Sbjct: 775 NETHDIMLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVAAL 821



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 35/295 (11%)

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG----- 523
           G   I  E N +  +  E L + S+   +L    +  +  +   + P  +R  +G     
Sbjct: 543 GSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTFIRN 602

Query: 524 LLDMEDEDCI---------VRED---MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
           LL +E+ + +         + ED    +   ++LGYVKR  +S +++ R+GG     + +
Sbjct: 603 LLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKSARKGG--LIAINL 660

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + + + D+ + S H  +L  +  G+   + E   R     P  R    +  +SL   + 
Sbjct: 661 GEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVR-----PMGRTSHGVRGISLRPHDS 715

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILS 686
           + ++    +D        V+  T  G  +R  +S++    R GK  + L   D    I+ 
Sbjct: 716 VVSMDSCVDDTGE-----VLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVTDRTGLIVG 770

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +   + +DI+L +  G  +R   + I  + GRN+ GV+ + L  GD+V ++AIV
Sbjct: 771 SKFINETHDIMLISAAGIIIRMNAADISTY-GRNAQGVKLMDLEAGDKVAALAIV 824


>gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
 gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
          Length = 828

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/883 (42%), Positives = 553/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNF S+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  + +  F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                          D +E+                  
Sbjct: 693 EDDRVVGASRIR-------------------------DNQEV------------------ 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     L ++E GFGKRTS+ D+    R GKGI+  ++   N  G L  +  V+  
Sbjct: 710 ----------LVITENGFGKRTSATDYPTKGRGGKGIKTANIIPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  V  I    RAT GV I     D ++V+
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800



 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R +E   K  F  T  ++G  KRT   +F  +N    G+RA    K+ E   L+ V   +
Sbjct: 602 RKEETAGKSFFFTT--KQGIVKRTEVSEF--NNIRQNGLRAL---KLKEGDQLINVLLTS 654

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             D II+ +  G  +R     IR   R+  GV      +D+RVV   RIR+++ V
Sbjct: 655 GQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/894 (40%), Positives = 563/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +    +   Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +RV  GR++ GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M     +D  Y   +C  ++   +R  I                      E
Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++ K   + +LT              +++++++GK               +V +  VN
Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKTGK---------------IVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           D+D+I++ S +G  IR+ V+++ +  R T+GV +      + +V S+ RI+  E
Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809


>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 813

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/893 (41%), Positives = 555/893 (62%), Gaps = 90/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  K I  V +  +M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EESYKNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A + NP+I +  L EII+GPDFPTGA ILG++GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQILGKSGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A+A+++LN LY+ T L++ F +  +AL    P+   L  ++K ++  ++ VV
Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYIEHQKNVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   +R         
Sbjct: 363 RRRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDLQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL+   +L+G+I++E+L +K++    RRT+IV  EG  D+E+   I +ED++++++H GY
Sbjct: 457 ILNDEEKLIGVIEEEILEIKEKFADDRRTKIVPDEGEFDIEE--LIEKEDVLISLTHDGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY    + +P
Sbjct: 515 IKRLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q+RG+A+INI+SL   E+IT IM   E     +N  +VF T+ G +++     F  
Sbjct: 575 EASRQSRGQAIINIISLATNEKITDIMELSE---LSDNSQLVFQTEKGKIKKTDAQLFTN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I R+G IA+ L+  D ++S+       DI++TT+ G  ++F  S IR   GRN+ GVR I
Sbjct: 632 IQRNGIIAISLEDDDRLVSIRQIDHPCDIIVTTQKGMAIKFASSDIRSM-GRNARGVRAI 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+K                                             +D+ V  NI E
Sbjct: 691 RLSK---------------------------------------------DDNVVSMNIVE 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +        E ++L V+  GFGK+TS  +F   NR GKG+R   +++  + G +VA  P 
Sbjct: 706 D--------EVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTGNVVATLPA 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERIRE 899
           N +D I++VS KG +IR+   +I    R T GV + +    E  +VSV +  E
Sbjct: 756 NLDDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLENTEDFIVSVTKYYE 808


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/893 (41%), Positives = 530/893 (59%), Gaps = 62/893 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I +EM++SY+ Y+++VI+GRA+PD+RDGLKPVHRR+L+GM ++G+  + 
Sbjct: 2   EAEKPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD+++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ KDTVDF+ N+DGS +EPVVL A  PN++VNG  GIAVGMAT 
Sbjct: 122 YTEARLTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATK 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE VD  VA+IDNPDI LD L++ +  PDFPTG +I G +G+K AYATGRG I+
Sbjct: 182 IPPHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVKEAYATGRGRIL 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   H E+    R  +V+TEIPYQVNK++++EKIA LVRE+RI  I D+RDESDR+G R
Sbjct: 242 IRARIHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+EL++ A   VI NQLY+YT  Q  F VNMVAL   +P   TL  +++ ++  R EVV
Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA +RAH+L GL IA+ +LD V+ IIR+S +P+ AR+ LM+         +
Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
             + +      +       L+E Q  AIL LRL+RLTGL R  +  E  +L  EI+    
Sbjct: 422 QRERL---GLPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRS 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S      II++ELL +K +    RRT I   G  D   ED I  E +VVT+SH G +
Sbjct: 479 ILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLI 538

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+ +YR Q RGG G     MR++D++  LF    H  +LFF+  G  Y  +V+ +P 
Sbjct: 539 KRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPE 598

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNVRRNKLSD 664
           GS  + G+++ N++ +   +R+  ++       E+       YV+ AT+ G V++ +L  
Sbjct: 599 GSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEA 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G IA+     DE++          +LL +  G+ VRF  S +R   GRN+ GV
Sbjct: 659 FSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPM-GRNTRGV 717

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L  G                 E++  M  +S +                       
Sbjct: 718 RGIALETG-----------------EQVVGMVAVSPE----------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          IL++S  G+GKRT   ++ +  R GKG+    ++     G L+A+
Sbjct: 738 -----------ASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITP--RTGRLIAI 784

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D D +++++  G +IR+ V +I    R T+GV +      + +  V R+
Sbjct: 785 KAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQLKPGDAIADVTRL 837



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           EQ ++T+S +G  KRT  + +R   R G G++A+ + + + I  L   F   ++D ++  
Sbjct: 526 EQVVVTLSHQGLIKRTPVHIYRQQGRGGVGMKASGMREDDYIEHL---FACKNHDYLLFF 582

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEI 902
           +D G    + V +I   SR + G  I      A D+RV +V  IR+ + 
Sbjct: 583 TDHGRCYWLRVYDIPEGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDF 631


>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
 gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
          Length = 818

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/884 (40%), Positives = 538/884 (60%), Gaps = 92/884 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+    +  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   + + K 
Sbjct: 16  GVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMHDSGILPTRPHAKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR  G+V+GKYHPHG++A+YD + R+AQD+S+R+ L++G GNFGS+DGD  AA RYTE R
Sbjct: 76  ARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGSIDGDSAAAMRYTEAR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL DL K+TVD++PNYD S QEPVVL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 136 LAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGSNGIAVGMATNIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE +D    ++DNPD+ +D LM++I GPDFPTG +I+GR GIK+AY TGRGS+ +R   
Sbjct: 196 LGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKDAYETGRGSLTVRSRH 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313
            I ++   ++ IV+TEIPYQVN+  +++KI ELVR+K++ +I+++ D +DR     ++I+
Sbjct: 256 KIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNVHDGADRNSPVDIIID 315

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK  A   V+LN+LY++T LQ  F V  +AL    P   +L  +L+ ++  +E+V+VRRT
Sbjct: 316 LKSNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREMLRHYILHQEDVIVRRT 375

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA +RAH+L GL IA+ N+DEV++IIR S     A   L +R             
Sbjct: 376 RFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQER------------- 422

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE QT AILE+RL RLTGL R  + +EL  L  +I     ILS 
Sbjct: 423 -------------FNLSEAQTAAILEMRLRRLTGLERHKLEDELAELKEKIAYYKRILSD 469

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S +  +IK+ELL +K   +TPRRT +     D++ ED I  E++ VTV+  GYVKR+P+
Sbjct: 470 ESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDVEDLIADEEVAVTVTKAGYVKRIPV 529

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR Q+RGGKG  GV +++ DFV  LF+ STH+ +LFFS+ G VY+ KV+ +P  S  A
Sbjct: 530 SAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKVYRLKVYEIPEASRHA 589

Query: 614 RGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           RG A++N+L L +GE I  ++    FPEDE      Y++F T+ G V++  ++ + +  R
Sbjct: 590 RGTAIVNLLPLVKGESIAAVIATKDFPEDE------YLMFGTEQGMVKKTSMNLYDRTRR 643

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ L   D++++V       D+++ +  G+ +++    +R   GR+++GVRG+++ 
Sbjct: 644 DGLIAINLKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSM-GRDTMGVRGMTVP 702

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
              +V+ + I   A  D D                                         
Sbjct: 703 ANTKVLGLEI---ARPDTD----------------------------------------- 718

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++E G+GKRT   ++   +R G+G+    +    + G L A+  V ++
Sbjct: 719 ---------LLVITENGYGKRTPVSEYPSHHRGGQGVFT--IVMTAKKGNLSAMKVVAES 767

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           D+++++S+ G +IR    ++    RAT+GV + + A  ++V +V
Sbjct: 768 DELMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAV 811



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 18/224 (8%)

Query: 683 EILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI- 740
           E + VE    + ++ +T TK G   R P+SA R    R   G++G++L + D V  + + 
Sbjct: 501 EDIDVEDLIADEEVAVTVTKAGYVKRIPVSAYRQ-QKRGGKGMQGVNLKENDFVEHLFVA 559

Query: 741 ------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +  + A    R+   +   A R         +  L    S+   I+ +   E  
Sbjct: 560 STHSYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPE-- 617

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +++++  +E+G  K+TS   +  + R G  + A ++ + ++   L+AV  V   + +I
Sbjct: 618 --DEYLMFGTEQGMVKKTSMNLYDRTRRDG--LIAINLKEDDQ---LIAVRRVKSGEDVI 670

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +VS  G  I+    E+R   R T GV   +   + +V+ +E  R
Sbjct: 671 MVSSAGKAIKWNEGEVRSMGRDTMGVRGMTVPANTKVLGLEIAR 714


>gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
 gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
          Length = 993

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/973 (39%), Positives = 560/973 (57%), Gaps = 88/973 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K  H LL DL KDTV++  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 RKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  ++P I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+   + R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD+ G R+ I+L
Sbjct: 246 FEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+VI+N L++ T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D S   G DG +Y LS  Q  AI+ELRL RLTGL +D +  E + + 
Sbjct: 426 GSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +I++EL  +  +    R+T IVE  +D   ED I  E MV+T
Sbjct: 486 SQIAELTAILNDFNLLMNVIREELALILQQYGDARKTSIVESRIDFSREDLIPEEQMVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S+H +VL F+++G VY+ 
Sbjct: 546 VSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF----ATKHGNV 657
           KV+ +P  S  A+G+ ++N+L L++ E IT I+P  +    +      F          +
Sbjct: 606 KVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKERLAAFKAFVKANAAQL 665

Query: 658 RRNK----------------------LSDF--IQINRSGKIAMKLDSRDEILS-----VE 688
           + N+                      +SD   IQ+ + G      D  D+I++      E
Sbjct: 666 QANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSATDLDDDIINDFAQQAE 725

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +   + + T+ G   R  +     F+   S G+R I L   D +I +AI      D 
Sbjct: 726 AVRKNFYVFMATEYGTIKRVELEQ---FSNVRSNGLRAIELNGDDTLIGVAIT-----DG 777

Query: 749 DERICYMKH----------------------------MSAQRRLISGDTEEITSLKNDSS 780
           +++I    +                            + A  +L   D  EI S   D S
Sbjct: 778 EQQIMLFSNEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGS 837

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               IS      +  +   +L  SE G+GKRT   DF    R GKG+ A   S+ N  G 
Sbjct: 838 DSALISRIVSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GQ 895

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE---RVVSVERI 897
           LV    ++ + +++L+SD GTL+R   +E+    R  +GV +     +E    VVS+E +
Sbjct: 896 LVGAVAIDASKELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAV 955

Query: 898 RESEIVDEAESTE 910
            E E V+  E  E
Sbjct: 956 EEDEFVEAIEGAE 968


>gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
 gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
          Length = 811

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/888 (40%), Positives = 550/888 (61%), Gaps = 96/888 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKIDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L   +++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQ+
Sbjct: 463 MKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQK 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582

Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE++     I  F PE E       +VF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K    D+I+ V   E   +E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 TVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+    VS+  + G +V+V  V++++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807


>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
          Length = 848

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/895 (41%), Positives = 542/895 (60%), Gaps = 99/895 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP+VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E++   V +IDN      +  L+ +MEI++GPDFPTGA ILGR GI+ AY TGR  I +
Sbjct: 189 REIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATILGRRGIEEAYRTGRAKIKV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE  +  + +I+VTE+PY VNKA ++EKIA+LV+EK+I  I  + DES+R+G R+
Sbjct: 249 RAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L+ ++  +EEVV 
Sbjct: 309 NIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQPKVLNLHQMLEEYLKHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR + N   A+ +LM+R          
Sbjct: 369 RRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q++AI+++RL  LTGL R+ + NE   L  +I+E   I
Sbjct: 421 ------------------LSDAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LL +I+ E++ + D+    RRT I     DM  ED I  ED ++ ++HLGY+KR
Sbjct: 463 LADEKKLLTVIRDEIMIISDKYGDDRRTAIGYD-DDMSMEDLIPDEDTIIAMTHLGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGGKG  G+   +ED++ DL + + H  ++FF++ G VY+ K + +P   
Sbjct: 522 MDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKAYEIPEAG 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT I+P  E     ++ Y+  AT++G V++  + ++  + +
Sbjct: 582 RTARGTAIINLLQLMPEEKITAIIPMRE---FNDDKYLFMATRNGMVKKTPMVEYEHVRK 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+      DILL T+ G C+RF  + +RV  GR S+GV G+   
Sbjct: 639 NGLQAIVLRDGDELIEVKATDNSQDILLVTRKGMCIRFNETDVRV-TGRVSMGVIGMRFE 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M                   M +Q     GD+                     
Sbjct: 698 DDDEVIGM------------------QMQSQ-----GDS--------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPV 847
                    +L VSE G GKRT   +F   NR GKG+   + TD     + G LV    V
Sbjct: 714 ---------LLVVSENGMGKRTMITEFSAQNRGGKGVICYKCTD-----KTGYLVGAKLV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRES 900
           ND  +I++++ +G +IR+ V++I +  R T GV + S  +D   +V S+ ++RES
Sbjct: 760 NDGREIMIITTEGIIIRMTVDDISVIGRNTSGVKLMSIDQDSDIKVASIAKVRES 814


>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
          Length = 835

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/894 (39%), Positives = 544/894 (60%), Gaps = 84/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 5   ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 65  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 125 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R    
Sbjct: 185 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRAKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++I+V EIPY VNKA ++ +IA+L R K I  I D+ DE+DR G R+VI+++
Sbjct: 245 IEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDVR 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E+VV RRT++
Sbjct: 305 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRRTEF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL IA+ ++DE++ IIR S   E A+ ELM                 
Sbjct: 365 DLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                    G   LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  DIL+ + 
Sbjct: 408 ---------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILAHKE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  EL+ ++ +    RRT +  G + ++EDED I  +D++VT++H GY+KR+P+ 
Sbjct: 459 RINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVD 518

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY  K + +P     A+
Sbjct: 519 EFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRSAQ 578

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L+++  E+I+ ++     E++ ++ ++ F TK+G V+R  + +F  I  +G  
Sbjct: 579 GIPIINLLNIDSQEKISAVINVSH-ETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNGLK 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    +  +++ T+ G  + F  + +R   GR + GVRGI L   D 
Sbjct: 638 AINLHDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRDHDF 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  A  LH D +                                               
Sbjct: 697 VIGAA-PLHQDDN----------------------------------------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L +SE GFGK+T + ++ I  R G G++  +V+K N  G LV +  V  ++ I+
Sbjct: 709 -----VLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDEDIM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           LV+D+G +IR  +  +    R+  GV +       +V ++ ++ + +  D+A +
Sbjct: 762 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDGDDAPA 815


>gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11]
          Length = 811

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/889 (41%), Positives = 549/889 (61%), Gaps = 98/889 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L   +++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++    RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQR
Sbjct: 463 MKKELLELKEKYADKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSN 582

Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE++     I  F PE E       VVF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVRDTIVIKEFLPEKE-------VVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K    D+I+ V   E   +E +IL+ T  G C RF    IR   GR++ GV+ I+L KGD
Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRKGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 MVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQ 852
                 ILT++E G+GKRTS  ++   NR GKG+      K+NE  G +V+V  V+++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINL---KVNEKTGKVVSVLEVSEDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++ ++  G +IR  +NEI    RAT+GV I   A DE+V ++ +I++ E
Sbjct: 759 LMCITSNGIVIRTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/730 (47%), Positives = 489/730 (66%), Gaps = 33/730 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+GM ++G  ++K Y 
Sbjct: 4   QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMGKYHPHG+ AIYD + RM QD+SLR  LI+GQGNFGSVDGD  AA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +LDDL K+TV+F PN+D S +EP VL A+ PN+L+NG  GIAVGMATNIP 
Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG VA+I++P I+   L+++I GPDFPTGA I GR GIK+AY TGRGSI IR 
Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIYGREGIKDAYLTGRGSIKIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I +  G R  I+VTEIPY VNKA ++E IA+LVR+K++  I+DLRDESDR G R+VI
Sbjct: 244 KAEITEEGG-RNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+GA+A+V+LNQLYR+T +++ F VN +AL   +P   +L   L+ ++  R+EVV RR
Sbjct: 303 ELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQPRTLSLKETLEYYLKHRQEVVTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L KA+ R H+L GL +A+ N+D+ V I+R S + + A+   M +            
Sbjct: 363 SQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYG---------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q++AIL++RL  LTGL R  I +E   L   I    ++L+
Sbjct: 413 ----------------LSEEQSKAILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L IIK ELL ++ +    RRT I E   ++ DED I  E++VVT+S+ GY+KR P
Sbjct: 457 SPQMVLDIIKNELLELRAKYGDGRRTIIKESDGEIVDEDLIPVENVVVTISNTGYIKRQP 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  YR QRRGG G  G+  ++EDFV D+F  STH  +LFF++ G VY  KV+ +P  S Q
Sbjct: 517 VDTYRTQRRGGMGIMGMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQ 576

Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +RGKA++N+L+L   E +  ++P  E DE      Y++  T+ G +++  LS F  I R+
Sbjct: 577 SRGKAIVNLLTLMPNESVNAMIPIKEFDEKH----YLIMCTREGTIKKTALSSFQNIRRT 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ LD  DE++SV+      ++L+ T+ G+  RF  S +R   GR + GV GI L +
Sbjct: 633 GIIAIGLDEGDELISVKLTNGGQEVLIATRNGKANRFSESEVRPM-GRQAGGVIGIRLTE 691

Query: 732 GDQVISMAIV 741
            D+VI M +V
Sbjct: 692 KDKVIGMEVV 701


>gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 811

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/888 (41%), Positives = 535/888 (60%), Gaps = 90/888 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I DE++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+   K AR+
Sbjct: 4   QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L+ GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   + D+ K+TV+FRPNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +VDG +  +D+P+  +  L  +++GPDFPTG       G+++AY TGRG++ IRG   +E
Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGRGLRDAYETGRGTVKIRGRVEVE 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +     + IV+ EIPY +NK++++EKIA L  E+RI  I DLRDESDR+G RVVI+LKRG
Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKRG 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++++NQLY+YT L++ F +NM+A+ G +P+  TL  + + F+  R EV++RRT Y L
Sbjct: 304 TIPEIVINQLYKYTPLETSFGINMLAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHYDL 363

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ N+DEVV +IR S  P  A+  LMQR                 
Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQR----------------- 406

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSEVQ +AIL++RL RLT L  + +  E   L  +I+    IL +   L
Sbjct: 407 ---------FSLSEVQAQAILDMRLQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVL 457

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G+I+ EL  +K+   TPRRT ++E  L+  D ED I  ED+V+T+S  GY+KR PL  Y
Sbjct: 458 RGVIRDELKELKETYATPRRTEMLEDELEGIDIEDLIPDEDVVITLSRRGYIKRTPLDSY 517

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + QRRGGKG +GV   D DFV D  + + H  +L F++ G +++ KV ++P GS  A+G 
Sbjct: 518 QQQRRGGKGIAGVHTGDGDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGM 577

Query: 617 ALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            + N+L + + E +    TI  F E++      Y +F+T+ G V+R+  S + +  R+G 
Sbjct: 578 HINNLLPMEENEWVNTALTIREFTEEK------YFLFSTRKGMVKRSSASLYAKARRTGL 631

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V       +++LTT+ G  +RF    +R   GR++ GV+GI+L++ D
Sbjct: 632 IAVGLREGDELIMVREVDDNCEVVLTTEKGIAIRFGCGDVRPM-GRSATGVKGIALSQDD 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++                                          +V+G +  E     
Sbjct: 691 SVVACV----------------------------------------TVQGGLESE----- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 I+TVS  G+GKRT    +R+ +R GKG+    V+   + G ++    V  NDQ+
Sbjct: 706 ------IMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTP--KTGEVLGAMTVVSNDQL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IL++    +IR+ V E+R   RAT+GV +    + + VV  +R+ E E
Sbjct: 758 ILLTSTNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVVGFDRVSEQE 805


>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
 gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
          Length = 852

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/890 (40%), Positives = 537/890 (60%), Gaps = 92/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V + + M+ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 10  IHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQDWS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 70  RIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EP +L +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E +DG V +IDN      D ++D L+EI++GPDFPTGA ILGR GI  AY TGRG I +
Sbjct: 190 RETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAILGRKGIDQAYRTGRGKIKV 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     +++I+VTE+PY VNKA ++EKIA+LV+EKRI  I +LRDESDR G R+
Sbjct: 250 RAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDESDRSGMRI 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE ++  +A+V+L QL+++T LQ  F V M+AL   +P+   L  +L  ++  +++VV 
Sbjct: 310 CIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQPKVLNLKEMLVHYLNHQKDVVT 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA++RAH+L GL  A+  +DEV+ IIR S N   AR  L++R          
Sbjct: 370 RRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKR---------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q +AI+++RL  LTGL R+ ++NE + L  +I E   I
Sbjct: 420 ----------------FEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LLG+I++E+L ++D+    RRT I   + D+ DE  I R+D ++T S LGY+KR
Sbjct: 464 LADEKVLLGVIREEILLIRDKYGDDRRTSIEMDMEDLSDEALIPRKDAIITFSKLGYIKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + +Q RGGKG  G+ + DED + DLF+ STH  ++FF++ G VY+ K + +P  S
Sbjct: 524 MTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLKGYEIPESS 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  +IN+L L   E+IT I+P  ED       Y+V AT++G V++    ++  + +
Sbjct: 584 RTARGVNIINLLQLQPEEKITAIIPLSEDGKQH---YLVMATRNGIVKKTGFDEYKNVRK 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+   +  DI L ++ GQC+RF +  +R   GR S+GV G++L 
Sbjct: 641 NGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRE-TGRVSMGVIGMNLG 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+ M I  H++ D D  I   K M                                
Sbjct: 700 DTDEVVGMQI--HSEGD-DLLIVSEKGM-------------------------------- 724

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                             GKRT   +F + +R GKG+R   +++  + G ++ V  +   
Sbjct: 725 ------------------GKRTPLDEFTVQHRGGKGLRCYKITE--KTGYVIGVKTIKPE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIR 898
           ++I+L++ +G +IR+  + I +  R T GV + +   D   +V SV ++R
Sbjct: 765 EEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADSDIKVASVAKVR 814



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 20/264 (7%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           ++  +K G ++R    +F   NR GK    M +   D I  +   +  N I+  T  G+ 
Sbjct: 512 IITFSKLGYIKRMTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRV 571

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            R     I   + R + GV  I+L +   ++ I+  I L  D     +  Y+  + A R 
Sbjct: 572 YRLKGYEIPE-SSRTARGVNIINLLQLQPEEKITAIIPLSEDG----KQHYL--VMATRN 624

Query: 764 LISGDT--EEITSLKNDSSVEGNISE-ERCQELKLKEQF--ILTVSEKGFGKRTSSYDFR 818
            I   T  +E  +++ +     ++ E +   E+K  ++   I  VS +G   R    D R
Sbjct: 625 GIVKKTGFDEYKNVRKNGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVR 684

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
            + R   G+   ++   +E+   V +   ++ D +++VS+KG   R P++E  +  R  K
Sbjct: 685 ETGRVSMGVIGMNLGDTDEV---VGMQIHSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGK 741

Query: 879 GVVIFS-TAKDERVVSVERIRESE 901
           G+  +  T K   V+ V+ I+  E
Sbjct: 742 GLRCYKITEKTGYVIGVKTIKPEE 765


>gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 871

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/893 (39%), Positives = 536/893 (60%), Gaps = 83/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y KCA
Sbjct: 12  IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNTSDKPYKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL
Sbjct: 72  RVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 132 SKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC A IDNP+ID + LM  I+ PDFPTGA I G  G+K+AY TGRG IV+R  + 
Sbjct: 192 AEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIYGLQGVKDAYETGRGRIVLRAKAE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +    ++IV++EIPY VNKA ++E IA+LV+E R+  I++  DES RQG R+V+++K
Sbjct: 252 IE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQGMRIVVDVK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+L++ T LQS FSVN +AL   +P   TL   +K FV  R +V +RRTK+
Sbjct: 311 RDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRHDVTIRRTKF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVV+IIR S  P  A+R L +R               
Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKR--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q++AI+++RL++LTGL  + +  E   L   I     IL    
Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIARLQLILDDPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++    RRT I+    +   ED    + +V+TVSHLGY+KR PLS 
Sbjct: 465 ECKRVMKAELEEVKEKFGDERRTEIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +  Q RGG G  G   RD+DF   ++  + H ++LFF+  G  +  K + +P G   ++G
Sbjct: 525 FHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEIPEGDKTSKG 584

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+++  + +   +      D     N ++VFATK+G V++  L  + +   +G 
Sbjct: 585 RAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVKKTSLEAYSRPRTNGV 644

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ +   DE++ V     +N +++  + G+ V F  + +R   GR + GVRG+ L  GD
Sbjct: 645 NAITIAEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTM-GRTATGVRGMRLDGGD 703

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +   IV+                                  N+   E           
Sbjct: 704 DAVVGMIVV----------------------------------NNPETE----------- 718

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V D++ +
Sbjct: 719 -----TVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDE 905
           ++++  G  IR+ V   R+  RAT+GV + + +K   V+ SV +++ S+  D+
Sbjct: 772 MIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSDKEDD 824


>gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 811

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/888 (40%), Positives = 550/888 (61%), Gaps = 96/888 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKIDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL ++ I  E   +   IKE  ++L   +++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEKEKIDTEFKEIEALIKELREVLEDNNKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQ+
Sbjct: 463 MKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQK 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582

Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE++     I  F PE E       +VF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K    D+I+ V   E   +E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 TVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+    VS+  + G +V+V  V++++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807


>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
 gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
          Length = 893

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/904 (41%), Positives = 547/904 (60%), Gaps = 41/904 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL    +  +L D+  +TVDF  N+DGS QEP+VL +R P +LVNG  GIAVGMATNIP
Sbjct: 125 CRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++G +A+I NP+I    LM+ I GPDFPTGA ILG+  I+ AY TGRGSI +R
Sbjct: 185 PHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQILGKASIREAYTTGRGSITMR 244

Query: 252 GVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        D+E I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR G
Sbjct: 245 GVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  +L   L  F+ FR E
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLSLKQFLSVFLDFRIE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL+         
Sbjct: 365 TITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELID-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSEVQ+ AIL+++L RLT L    I  E   L  +I + 
Sbjct: 417 ------------------TYGLSEVQSDAILQMQLRRLTALEAQKITQEHEELLEKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           LDIL+ R R+L II+ E+  +K +  +PRRT I     ++++ D I  E  ++ ++  GY
Sbjct: 459 LDILAKRERILEIIQTEVAEIKLKFASPRRTIIEHAEGEIDETDLIANEQAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S + AQ R  +G++G  M+++D V        H SVLFFS  G VY  + +++P
Sbjct: 519 IKRMPVSTFEAQSRATRGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ARG  ++ +L +   E+IT+I+   E     N  Y++  T+ G +++  LS F  
Sbjct: 579 VSSRTARGTPIVQLLPIPIEEKITSIVSVTE---FSNEEYLIMLTRSGFIKKTVLSAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRG 726
           I  +G IA+ L+  D++  V     ++ I++ ++ G  + F  +  ++   GR + GV+ 
Sbjct: 636 IRANGLIAISLEEGDQLRWVRLARVDDSIIIGSRQGMTIHFRTNHEQLRPVGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  GD++I M I+    +     I  ++   ++      +            +EG+ +
Sbjct: 696 MKLRAGDELIGMDIL---PSSIVASIAELETEDSELEEEELEVSAQEIEVQVEEIEGSDA 752

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           EE       +  + L ++  G+GKR     FR+  R+GKG+ AT          + A+  
Sbjct: 753 EE-IPTASSQGPWALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAALRI 811

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN+ND++++V+ +G +IR  VN I   SR   GV +    +D+ +V+V  +  S   +E+
Sbjct: 812 VNENDELMIVTSRGIIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSG--EES 869

Query: 907 ESTE 910
           ES E
Sbjct: 870 ESDE 873


>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
          Length = 809

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/891 (40%), Positives = 563/891 (63%), Gaps = 86/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +E E GI  V I+ +M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ +
Sbjct: 1   MTDTKEFENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD+++R  L++GQGNFG++DGD  
Sbjct: 61  VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ KDTV+F PN+D   +EP +L +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HN+ EV+DG V  IDN DI +  L E+I+GPDFPTGA+I+GR GI  AY TGR
Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I +    REQI++TE+PYQVNK+A++ KIAEL ++K I  I+ + D S++
Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+LK+ A+A+V+LN+LY+ T LQ  + +  +AL   +P+   L  +++ +V  +
Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RRT++ LNKA  RAH++ GL IA+ N+D V++IIR S                  
Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSS-----------------K 403

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D K++I+  D             L+++Q++AIL++RL RLTGL R+ ++NE + L  +IK
Sbjct: 404 DDKEVIEKFDRE---------FSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK ELL +KD+    RRT I     D++ ED I  ED+++T++ +
Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQM 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   Y+ Q+RGG+G + +  +++DFV +LF+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G A++N+L+L++GE+IT+++   E + ++   Y++  T+ G +++    +F
Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPNY---YLLMVTEKGLIKKTSNKEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G I +KL   D+++SV     + +I+L TK G+ +RF    +R   GRN++GV+
Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELR-DQGRNTMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D ++S  IV                         GD              GN 
Sbjct: 691 SMNLDEDDTIVSSDIV-------------------------GD--------------GN- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTVSE GFGK T   ++R  NR GKGI    +S+  + G + A  
Sbjct: 711 -------------YLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            VN +D I+L++D G +IR+ +++I + SR T GV + +   D +VV++ +
Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMN-LNDSKVVAIAK 805


>gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
 gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
          Length = 806

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/883 (40%), Positives = 548/883 (62%), Gaps = 89/883 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++K
Sbjct: 3   ERKLNIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN+
Sbjct: 123 TELRMAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + +
Sbjct: 183 APHNLGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIMGLEEVKNAYTTGRGKVKL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K++  I+DLRDESDR+G R+
Sbjct: 243 RAEARIEESKG-RYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VIE KR A+ +++LN LY+YT +Q+ F  +N+  +NG  P+  TL  ++  ++  +E VV
Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S   + A  +LMQR         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMQRFG------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEQLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  +K +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++   +D+   ++ +++F TK+G V++  L  +  I 
Sbjct: 573 SRTARGSNIINLIQIDADESVTQVLALDKDKE--DDQFIIFITKNGKVKKTSLDLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V                                    D+     ISE  
Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                            G+GK+T   ++   NR GKGIR   ++K  + G +     + +
Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            D+I+L+S K  +IR+    I   SR+T GV++ +T K E  +
Sbjct: 755 EDEILLISKKAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAI 797



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 17/215 (7%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM-AIVLHADADY---DER 751
           I +T K G   R    A +V   R   GV  + +  GD +  M A   H D  +     +
Sbjct: 503 ITITNK-GYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGK 560

Query: 752 ICYMKHMS---AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           +  +K      A R     +   +  +  D SV   ++ ++ +E    +QFI+ +++ G 
Sbjct: 561 VYSLKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDKE---DDQFIIFITKNGK 617

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            K+TS   +   N    GI A    K +E   L+ V  V  N+ +I+V+ KG  ++  V+
Sbjct: 618 VKKTSLDLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVD 672

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++R  SR   GV   +  KD+ V+S + ++++E +
Sbjct: 673 QLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707


>gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537]
          Length = 851

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/913 (40%), Positives = 562/913 (61%), Gaps = 95/913 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ERNDMRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +LI+G GNFGSVDGD PAA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMAT+
Sbjct: 123 YTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     ++DNPD+    LM  + GPDFPTGA+++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   REQI+VTE+PY VNKA ++E+++ELVR+KRI  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A++  KP+   L  IL A++  + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGKPKTLNLKEILVAYLEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   + A+  L++          
Sbjct: 363 RRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                   SY+        LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 --------SYS--------LSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+  +R+  II  ELL ++ +    RRT +  G + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHSARVDKIIYNELLDIQQKFGDERRTELQVGDVTNIEDEDLIEEEDVIVTLTSNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + D+D +  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPTAEFKAQNRGGRGVQGMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+ +  E+I T++    D+++ +  Y+ F T+ G V+R  + DF  I
Sbjct: 577 YGRHAKGIPVVNLLNFDNDEKIQTLISV-SDQTAASESYLFFVTQLGVVKRTAVKDFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+L+V     E +I++ T  G  V F  S +RV  GR++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI  A +L+  A+                                         
Sbjct: 695 LRDDDIVIG-ADILNPKAN----------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++E G+GK+T++ ++ I  R GKGI+  +++  N  G+LV +  V+
Sbjct: 713 -----------VLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKN--GSLVGMTIVD 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----------- 897
            ++ I+L +++G +IR   + +    RAT GV +    K+ +V ++ ++           
Sbjct: 760 GDEDIMLTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTD 819

Query: 898 RESEIVDEAESTE 910
            +++ VDE +S +
Sbjct: 820 SQAKAVDETQSEQ 832


>gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 828

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/892 (41%), Positives = 535/892 (59%), Gaps = 87/892 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI + ++NSYL YA++VI+GRA+PD+RDGLKPVHRR LF M +MGV +NK Y K ARI 
Sbjct: 10  ISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKAYKKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GK+HPHG++A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE RL K 
Sbjct: 70  GDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL DL KDTVDF  NYDG+  EP VL  R P +LVNG  GIAVGMATNIP HN+ E+
Sbjct: 130 SDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNIPPHNITEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     +ID P  D + ++  + GPDFPT  +I+G   I+ AY TGRGSI IR    IE+
Sbjct: 190 ISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKDIQTAYRTGRGSITIRARVLIEE 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           T   +  I+V EIPY VNKA+M+EKIA+LV+EK+I  I DLRDESD+ G RVVIELK+G 
Sbjct: 250 TKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRVVIELKKGE 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LN+LY++T LQ+ F  NMVA+   KP+  +L  IL+ F+  R  VV RRT++LL 
Sbjct: 310 NVDVVLNRLYKFTQLQTSFGFNMVAIVDGKPQTLSLREILEEFLKHRVTVVTRRTQFLLR 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H+L GL  AV N+DEV++ I+ S +   A+  L  +                  
Sbjct: 370 KAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQ------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E+Q ++ILE+RL +LTGL  + ++ E  ++  +I+    IL +RS ++
Sbjct: 412 --------FGFTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSILGNRSVMM 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +IK EL  V D+    RRT I  GL + EDED I   + VVT++H GY+K   LS Y A
Sbjct: 464 SVIKDELQDVLDKYGDDRRTEIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKATLLSSYVA 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG++G   +DEDFV  L + + HT ++FF++ G V+  KV+ LP     A+G+ +
Sbjct: 524 QKRGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQRDAKGRHI 583

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L+L   E + +++  P   +  +  Y+ FATK G +++  L +F +  RSG +A+KL
Sbjct: 584 SNLLTLEPEEFVASVLALP---AETDGKYLFFATKSGTIKKTSLEEF-KSGRSGIVAIKL 639

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DEIL+ +  T E+ ++L+TK G+ ++F  +  R   GR++ GVRGI+          
Sbjct: 640 RDGDEILTADITTDEDTVILSTKAGKTIQFSSTDARPM-GRSTSGVRGIT---------- 688

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                              + A+  L+S                         E+     
Sbjct: 689 -------------------LEARDELMS------------------------MEVLTGAP 705

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +IL+V+  G+GKRT   ++R+  R GKG++   VS   + G +V    V DND +++++ 
Sbjct: 706 YILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSP--KTGFVVGAKQVTDNDDVMIITR 763

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
               IR  V  I    R T GV +  T  D+ +++   I+E  I +++++ E
Sbjct: 764 SAKTIRTEVQGISKMGRDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNE 814


>gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
          Length = 827

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/879 (41%), Positives = 545/879 (62%), Gaps = 91/879 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  + V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F    
Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGSNR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV GI 
Sbjct: 636 SCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+V+  D +                                         
Sbjct: 695 LNENDFVVG-AVVISDDGNK---------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV V  V+
Sbjct: 714 -----------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVGVISVD 760

Query: 849 D-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           D N  +++++    +IRV + +IR   R   GV + +TA
Sbjct: 761 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  +    + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601


>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
 gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
          Length = 882

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/888 (41%), Positives = 539/888 (60%), Gaps = 45/888 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL    +  +L D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+VDG VA+I NP+I    LM  I GPDFPTGA ILGR+GI+ AY TGRGSI +R
Sbjct: 185 PHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMR 244

Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE    +   DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR+G
Sbjct: 245 GVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A   V+LN LY+ T LQ+ F  NM+AL   KPE  TL   L  F+ FR +
Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKRYLHVFLDFRID 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y   KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL++R       
Sbjct: 365 TIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AIL+++L RLT L    I  E   L  +I + 
Sbjct: 418 -------------------FGLSEPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L I++QE   +K    TPRRT I     ++ED D I  E  ++ ++  GY
Sbjct: 459 NDILNRRERILEIVEQEAQEIKQRHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D V        H S++FF+  G  Y  K +++P
Sbjct: 519 IKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           IGS  ARG  ++ +L + + E+IT+++   E     N+ Y+V  TK G +++  LS F  
Sbjct: 579 IGSRIARGVPIVQMLPIPRDEKITSLVAVGE---FSNDEYLVMLTKGGYIKKTALSAFNN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  DE+  V +   ++ +++ ++LG  + F     ++   GR + GV+ 
Sbjct: 636 IRSNGIIAISLNEGDELRWVRSAKVDDSVIIGSRLGMAIHFHTDDKQLRPLGRATRGVKA 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++I M I+          +  +  +  +   I  +        +D+  E    
Sbjct: 696 MKLKPDDELIGMDILPSF------IVASIPKLGGEETEIEEEENTTVEEVDDTESE---- 745

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E    E++     IL ++ +G+GKR     FR+ NR+GKGI AT          +VA+  
Sbjct: 746 EIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVALQV 805

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           V++ D+++L++ +G +IR  ++ I   SR   GV +    K++ + +V
Sbjct: 806 VHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAV 853


>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
 gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 850

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/887 (41%), Positives = 550/887 (62%), Gaps = 84/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV  +K Y K A
Sbjct: 15  VTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHELGVTPDKPYKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+Y+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 75  RIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDT+DF+PNYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 SKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++ NPD     LME + GPDFPTG V++G++GI+ AY TG+G+I++R    
Sbjct: 195 SEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYETGKGTIIVRAKVE 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +G +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR+G RVVI+++
Sbjct: 255 IEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDVR 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ FS NM+A+    P+  +L  IL  ++  + EV+ RRTKY
Sbjct: 315 RDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLEHQVEVIQRRTKY 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA+ RAH+L GL IA+ ++DE+++IIR S   + A+ +L++                
Sbjct: 375 ELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIE---------------- 418

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L + Q +AIL++RL RLTGL R+ I  E N L  +I+E   IL+SR 
Sbjct: 419 ----------GFGLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILASRE 468

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II QELL ++++   PRRT ++ G +L +EDED I  ED++++++H GY+KR+P S
Sbjct: 469 RVNEIIYQELLEIQNKFGDPRRTELLVGEVLSLEDEDLIEEEDVIISLTHNGYIKRLPTS 528

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + ++DFV  L   STH  +LFF+  G VY+ K + +P     A+
Sbjct: 529 EFKAQNRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAK 588

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L++   E+I  ++    D+++     + F T  G V+R  +SDF  I  +G  
Sbjct: 589 GIPVINLLNIGNNEKIQAVINV-SDKNNDIEKDLFFVTLMGTVKRTPVSDFANIRSNGLK 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++ +V   +++ +I++ T  G  V F  + +R   GR++ GVRG+ L + D 
Sbjct: 648 AINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSM-GRSATGVRGVRLRENDY 706

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   I                                  LK DS V             
Sbjct: 707 VVGSDI----------------------------------LKPDSEV------------- 719

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               FI  +SE G+GKRT + ++ I  R GKGI+  ++++ N  G L  +  VN  + I+
Sbjct: 720 ----FI--ISENGYGKRTPAAEYPIKGRGGKGIKTANITEKN--GPLAGLTTVNGEEDIM 771

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           L++D+G +IR  V ++    RAT GV +       +V ++ ++ + +
Sbjct: 772 LITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQD 818



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 107/236 (45%), Gaps = 22/236 (9%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           ++ ++++ D++  + +D+   V+ +G VKR P+S +   R    G   + ++D+D V+++
Sbjct: 604 IQAVINVSDKNNDIEKDLFF-VTLMGTVKRTPVSDFANIR--SNGLKAINLKDDDQVSNV 660

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER---ITTIMPFP 637
            I S   +++  +  G+        +     ++ G++   +  +   E    + + +  P
Sbjct: 661 LIASEDQNIIIGTHRGYAVSFNAADV-----RSMGRSATGVRGVRLRENDYVVGSDILKP 715

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEN 694
           + E       V   +++G  +R   +++    R GK    A   +    +  + T   E 
Sbjct: 716 DSE-------VFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKNGPLAGLTTVNGEE 768

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           DI+L T  G  +RF +  +    GR ++GV  I +  G +V +MA V   D   D+
Sbjct: 769 DIMLITDQGVMIRFSVEDVSQ-TGRATLGVHLIRMTDGAKVATMAKVEKQDDSEDD 823


>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
 gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
          Length = 825

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/910 (41%), Positives = 550/910 (60%), Gaps = 99/910 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S  E+ K +  VSI +EM++SYL YA++VI+GRAIPD+RDGLKPVHRR L+ M +MG  
Sbjct: 6   NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGNY 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K + K ARI GEVMGKYHPHG+++IYD L +MAQ +S R +L+EGQGNFGS+DGD  A
Sbjct: 66  HDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSAA 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   +  LL+D+ K+TVDF PN+D S QEP+VL A+ PN+LVNG  GIAVGM
Sbjct: 126 AMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVGM 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT +P HN+GEV     A+ID+P+I    LME + GPDFPTG VILGR+GI +AY TGRG
Sbjct: 186 ATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVILGRSGIASAYTTGRG 245

Query: 247 SIVIRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            I +RGV+ IE   G ++ +I+++EIPYQVNKA ++E+IA+LVR+K+I  I+D+RDESD+
Sbjct: 246 RIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDESDK 305

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+     V+LNQLY++T L+S F V  +A+   +P+  TL  I++ F+  R
Sbjct: 306 DGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQPKVLTLKEIIQEFLKHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT + L KA DR H+L GL +A+ N+D V+  IR S   E A ++L++      
Sbjct: 366 KSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIE------ 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L E+Q  AIL+++L RL  L +  I +E + L  E++
Sbjct: 420 --------------------NFGLDEIQADAILKMQLRRLAALEQQKIIDERDGLLKEVE 459

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               I+S    +   IK+E L + ++    RRT+I   + D++ ED I  + ++V+++  
Sbjct: 460 RLKLIISDEGHIFAEIKKETLEISEKYSDERRTKISHDVSDLDKEDLIENKQVLVSLTSH 519

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K +PL  Y+ Q RGG+G  G+  +DEDFV  +F+ STH  +L F+S G VY  KV+ 
Sbjct: 520 NYIKSMPLDTYKGQHRGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVYWLKVYD 579

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662
           +P  + Q+RGKA++N+L L   E++T ++P   F EDE      + +FAT +G V +   
Sbjct: 580 IPEATRQSRGKAIVNLLELGDEEKVTAVIPVSEFKEDE------FFLFATLNGMVVKIPQ 633

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +  +SG  A+ L   DE++ V       +I+LTT++GQ +RF I +I     RN++
Sbjct: 634 VEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILTTRMGQSLRFGIESIS-LRHRNAL 692

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI L   D++                                  +++T ++ D    
Sbjct: 693 GVKGIKLRYMDEL----------------------------------QDVTPVEKD---- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGA 840
                            +LT++EKG+GKRT   +FR   R+  G+R   TDVS     G 
Sbjct: 715 ----------------HLLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTDVS-----GG 753

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V+   V+D++ IIL+S  G +IR  V+EI I  R T+GV I    + + VV    I +S
Sbjct: 754 IVSSKAVSDDEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLDEGDSVVGF-TILDS 812

Query: 901 EIVDEAESTE 910
           +  DEA   E
Sbjct: 813 DEGDEAGPDE 822


>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
 gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
          Length = 841

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/880 (42%), Positives = 534/880 (60%), Gaps = 71/880 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DP AA RYTECRLQ  A + LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+  +TVDF  N+DGS QEPVVL +R P +LVNG  GIAVGMATNIP HNLGE++DG  
Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE---KTS 260
           A+I NP+I +  LM+ I  PDFPTGA ILGR+GIK+AY TGRGSI +RGV+ IE   +  
Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQILGRSGIKDAYMTGRGSITMRGVAEIETLRQNG 240

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            ++E I+VT++PYQ NKAA++E+IA++V +K+I  I+D+RDESDRQG R+VIELKR A  
Sbjct: 241 REKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAYP 300

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY++T LQ+ F  NM+AL   +P+   L   L+ F+ FR EV+ RRT+Y L KA
Sbjct: 301 RVVLNNLYKHTPLQANFGANMLALVNGEPQLLNLKQFLQVFLDFRVEVITRRTRYELRKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++R H+L GL IA+ NLD V+ +IR + +   AR+ LM   +N                 
Sbjct: 361 QERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMD-GYN----------------- 402

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+ Q  AIL+++L RLT L  D I  E   L ++I +  DIL+ R R+  I
Sbjct: 403 --------LSQAQADAILQMQLRRLTALEADKIEAEHQDLLLKITDLEDILARRERVYAI 454

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I+ EL  +K    + RRT +V    D++D D I  E   + ++  GY+KR+P++ + AQ 
Sbjct: 455 IEAELTEIKTIHQSDRRTELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQN 514

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           R  +G++   M+++D V        H  VLFF+  G VY    +++P  S  ARG   I 
Sbjct: 515 RATRGKAATKMKEDDGVDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQ 574

Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +L + + E+IT ++    F EDE      Y+V  T++G +++  LS F +I  +G IA+ 
Sbjct: 575 LLPIPKDEKITAMLAVSEFTEDE------YLVMLTQNGYIKKTALSAFAKIRSNGLIAIS 628

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL-AKGDQV 735
           L+  DE+  V    QE+ I++ +  G  + F     ++   GR++ GVR + L +  D++
Sbjct: 629 LEDGDELRWVRLARQEDSIIVASSEGMAIHFQADHNQLRPLGRSTRGVRAMKLKSDDDKL 688

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM IV                 S+Q        +      ++  V  N+ +        
Sbjct: 689 VSMDIV-----------------SSQITAAIAAADTAEDEDDNEEVTENVDQ-------- 723

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDNDQII 854
              +++ V+ KGFGKR     FR+ NR+G G+RA    SK + + +L  V P    D+++
Sbjct: 724 -GPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFKSKADRLASLRIVNP---EDELM 779

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           LV+ +G +IR  V  I + SR+  GV +     D+ +V+V
Sbjct: 780 LVTGRGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAV 819


>gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
 gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
          Length = 811

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/888 (40%), Positives = 549/888 (61%), Gaps = 96/888 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKIDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L   +++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQ+
Sbjct: 463 MKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQK 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582

Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE++     I  F PE E       +VF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K    D+I+ V   E   +E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 TVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V++++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVSEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807


>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
 gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
          Length = 862

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/885 (42%), Positives = 538/885 (60%), Gaps = 60/885 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  + + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I NP++    L++II GPDFPTG  ILGR+GI +AY TGRGSI +RGV+
Sbjct: 188 LGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DRE I++T++PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR G RV
Sbjct: 248 QIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRDGMRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L  F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKEFLSVFLDFRIETIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  +A+ EL+Q           
Sbjct: 368 RRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS VQ  AIL+++L RLT L  + I  E   L ++I +  DI
Sbjct: 418 ----------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+  II++EL  +K    TPRRT IV    ++ D D I  E  ++ ++  GY+KR
Sbjct: 462 LARRERIEAIIEEELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + AQ+R  +G++   ++D+D V        H  VLFFS  G VY    +++P  S
Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + + E+IT+I+   E      ++++V  T  G +++  LS F  I  
Sbjct: 582 RTARGIPIVQMLPIPKDEKITSIVAVSE---FTEDVFLVMLTHKGYIKKTALSAFSNIRT 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L   D++  V    +E+ I+L T+ G  + F     ++   GR + GV+ + L
Sbjct: 639 NGLIAISLGEGDQLRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPLGRATRGVKAMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD++ISM +                 + AQ       T  I     D  V  N +EE 
Sbjct: 699 KKGDELISMDV-----------------LPAQV------TAGIADAAEDEDVLDNETEEL 735

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +E      +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++  VN 
Sbjct: 736 SEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFK--SKTDCLASLHVVNA 793

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            D++++VS++G +IR  V+ I + SRA  GV +     D+ + +V
Sbjct: 794 EDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDAIAAV 838


>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 855

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/903 (40%), Positives = 537/903 (59%), Gaps = 95/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 SRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E++   V +IDN      D  ++ LMEI++GPDFPTGA ILG+ GI+ AY TGRG I +
Sbjct: 189 RELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+VTEIPY VNKA ++EKIAELV++KR+  I DLRDES+R+G R+
Sbjct: 249 RAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+++LNQL ++T LQ  F VNM+AL   +P+   L  +L  ++  +++VV 
Sbjct: 309 CIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLDHQKDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL  A+  +DEV+RIIR S     A+  LM+R          
Sbjct: 369 RRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL  LTGL R+ + NE   L   I E   I
Sbjct: 419 ----------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  ++LL +IK+E+  + D+    RRT+I     DM  ED I  ED+VV +++LGY+KR
Sbjct: 463 LADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAITNLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   DED++ +L + +TH  ++FF++ G VY+ K + +P   
Sbjct: 523 MSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG A++N++ L  GE+IT  +P  E DE      ++  ATK+G V+R  + ++  + 
Sbjct: 583 RTARGTAIVNLIQLQPGEKITATVPMKEFDEDK----FLFMATKNGMVKRTPMKEYENVR 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+      DI L TK G C+RF  + +R+  GR S+GV G+  
Sbjct: 639 KNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRI-TGRVSMGVIGMKF 697

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D++I M +                                             S+  
Sbjct: 698 DSDDEIIGMQMA--------------------------------------------SQGE 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C         +L VSE G GKRT   +F    R GKG+R   +++  + G LV    V++
Sbjct: 714 C---------LLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITE--KTGYLVGAKLVDE 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV--SVERIRESEIVDEAE 907
             QI+L++++G +I++ VN I I  R T GV +     +  VV  S+ ++RES   DE E
Sbjct: 763 GRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVASIAKVRESS-QDEDE 821

Query: 908 STE 910
             E
Sbjct: 822 ELE 824


>gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
 gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
          Length = 853

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/907 (40%), Positives = 541/907 (59%), Gaps = 97/907 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI+ RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN      +  ++ ++EII+GPDFPTGA ILG+ GI+ AY TGRG I +
Sbjct: 189 REVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R VS IE  +  + +I+VTE+PY VNKA ++EKIAELV++K++  I DLRDESDR G R+
Sbjct: 249 RAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFR 365
            IEL+R A+A+V+LNQL ++T LQ  F V M+AL        +P+   ++ +L  ++  +
Sbjct: 309 CIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYLDHQ 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM R     
Sbjct: 369 KEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSR----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+VQ++AI+++RL  LTGL R+ + NE   L   I 
Sbjct: 424 ---------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIA 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E   IL+   +LLG+IK+E+  +  +    RRT I     DM  ED I  E  +V ++ L
Sbjct: 463 ELKSILADEKKLLGVIKEEISIISAKYGDDRRTSIGFDEFDMSMEDLIPDESTIVAMTKL 522

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+ +  ++ Q RGG+G  G+   D+D++ DL + +TH  ++FF++ G VY+ K + 
Sbjct: 523 GYIKRMSVDNFKNQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYM 582

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  +RG A++N+L +  GE IT I+P  E +   ++ ++  AT++G V++  + ++
Sbjct: 583 IPEGSRTSRGTAIVNLLQMLPGESITAIIPMKEYD---DDKFLFMATRNGMVKKTPMMEY 639

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + ++G  A+ L   DE++ V+      DI L TK GQC+RF    +R+  GR S+GV 
Sbjct: 640 ANVRKNGLQAIVLRENDELIEVKATDDTKDIFLVTKKGQCIRFHEKDVRI-TGRVSMGVI 698

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L + DQV+ M                                               
Sbjct: 699 GMKLNEDDQVVGM----------------------------------------------- 711

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            ++  Q  KL     L VS  G GKRT   +F    R GKG+    +++  + G +V   
Sbjct: 712 -QKESQGPKL-----LIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITE--KTGDIVGAK 763

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIV 903
            V D+  ++L++ +G +IR+ VN+I +  R T GV + +  +D    V S+ ++R+    
Sbjct: 764 LVEDDHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQDSDITVASIAKVRDDGSK 823

Query: 904 DEAESTE 910
            + E  E
Sbjct: 824 SDGEGLE 830


>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
 gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
          Length = 861

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/883 (41%), Positives = 532/883 (60%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+   S  +   M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + 
Sbjct: 9   EETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELGVTPDKPHK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE
Sbjct: 69  KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDGAAAMRYTE 128

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ KDT++FR NYD + +EP VL AR PN+LVNG  GIAVGMATNIP 
Sbjct: 129 ARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAVGMATNIPP 188

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+     ++ NPD+    LME + GPDFPTG ++LG++GI+ AY TGRGSI +RG
Sbjct: 189 HNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVLGKSGIRRAYETGRGSITVRG 248

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IE+    +E+I++TE+PY VNKA ++E+IA+L  EK+I  I  L DESDR G RVVI
Sbjct: 249 RVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDESDRVGMRVVI 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++R  SA V+LN LY+ T LQS F  NM+A+   +P+  +L  IL+ ++  +EEVV RR
Sbjct: 309 EVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVNQEPKVLSLKEILRHYLDHQEEVVRRR 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + +   KA DRAH+L GL IA+ ++D +V I+R S + + A+   M              
Sbjct: 369 SLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYG---------- 418

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q +AIL++R+ RLTGL R+ I  E N L   I+    +L+
Sbjct: 419 ----------------LSDKQAQAILDMRMVRLTGLEREKIDAEYNELQATIQYLEKVLA 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S      II+QELL ++   D PRRT ++ G  L +EDED I +ED+V+T++  GY+KR+
Sbjct: 463 SEELRYEIIEQELLEIQQRFDNPRRTELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRL 522

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             + ++AQRRGG+G  G+ + D+D+V ++   STH S+LFF++ G VY+ K + +P  S 
Sbjct: 523 ANTEFKAQRRGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSR 582

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN+L+++  E+I  I+  PE + +    Y+ F T  G V+R +LS+F  I  +
Sbjct: 583 TAKGLPVINLLNIDSAEKIQAIISVPESDETER--YLFFTTLRGTVKRVRLSEFKNIRTN 640

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A++L   DE++ V   +  + I+L T  G  V F    +R   GR + GVRG+SL  
Sbjct: 641 GLRAIQLREDDELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAM-GRTASGVRGVSLRD 699

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD VI M I                        ++ D E                     
Sbjct: 700 GDYVIGMDI------------------------LTPDNE--------------------- 714

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSEKG+GKRT++ ++ +  R GKG+R   +++ N  G LV +  V  ++
Sbjct: 715 --------VLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKN--GPLVCLRTVTGDE 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++++++KG +IR    ++    R   GV +    +D  V S+
Sbjct: 765 DLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSL 807


>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
 gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
          Length = 853

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/899 (41%), Positives = 544/899 (60%), Gaps = 60/899 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    ++ EM  SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+  ++ + KCA
Sbjct: 8   IIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LIEG GNFGS+D DPPAA RYTE RL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTESRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  + + LL D+  +TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+I NP+I    LM+ I GPDFPTGA ILGR+GIK+AY  GRGSI +RGV+
Sbjct: 188 LGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQILGRSGIKDAYTNGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   +RE I+VTE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR G R+
Sbjct: 248 QIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T +Q+ F  NM+AL   +P+  TL   L+ F+ FR EV+ 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPQVLTLKDFLEVFLDFRVEVIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA +R HVL GL +A+ANLD ++++IR + +  TA+REL+ +          
Sbjct: 368 RRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQ---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ  AIL+++L RLT L  + I+ E   L  +I +  DI
Sbjct: 418 ----------------FGLSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITDLRDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+  II++EL  +K    TPRRT I++   ++ D D I  E  V+ ++  GY+KR
Sbjct: 462 LERRERVDHIIEEELNQLKTTHATPRRTEIIQEDGELIDLDLIANEQAVILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S +  Q R  +G+S   ++++D V        H  +LFFS  G VY    +++P  S
Sbjct: 522 MPVSTFGQQSRATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + + E+IT+++   E      + Y++  T+ G +++  LS +  I  
Sbjct: 582 RTARGVPIVQMLPIPKNEKITSMLAVSE---FSEDCYLIMLTRQGYIKKTVLSAYSNIRA 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISL 729
           +G IA+ L   D++  V    +E+ I++ T+ G  + F   + ++   GR + GV+ + L
Sbjct: 639 NGLIAITLSEGDQLRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVKSMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D++IS+ I                       L S     I + +++   E   +EE 
Sbjct: 699 KGTDEIISVDI-----------------------LPSQVVANIATSEDEVEDETLETEEI 735

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E      ++L ++  G+GKR     FR+  R+G G++A      N+   LVA+  VN 
Sbjct: 736 ISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFK--NDHDQLVAIHVVNQ 793

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D++++V+++G +IR  V+ I   SR   GV +    +D+ + +V  +  S   ++ ES
Sbjct: 794 DDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPPSAEGEDPES 852


>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
 gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
          Length = 840

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/902 (40%), Positives = 547/902 (60%), Gaps = 92/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+GK+TVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN      + +++ ++EII+GPDFPTGA ILG+ GI+ AY TGRG I +
Sbjct: 189 REVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATILGKMGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+VTE+PY VNKA ++EK+AEL +EK+I  I DLRDESDR G R+
Sbjct: 249 RAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R  +A+VILNQL ++T LQ  F V M+AL   +P    L+ +LK ++  ++EVV 
Sbjct: 309 VIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNLMQMLKLYLEHQKEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ ELM+R          
Sbjct: 369 RRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL  LTGL R+ + NE   L  +I+E   I
Sbjct: 421 ------------------LSDAQAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+I++E++ + D+    RRT I     DM  ED I  E+ +V ++ LGY+KR
Sbjct: 463 LADEKKLLGVIREEIMLISDKYGDDRRTSIGFDEFDMSMEDLIPDENTIVAMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   D+D++ DL + + H  ++FF++ G VY+ K + +P GS
Sbjct: 523 MSVDNFKSQNRGGKGIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L  GE IT I+P  E +   ++ ++  ATK+G V++  + ++  + +
Sbjct: 583 RTARGTAIINLLQLLPGESITAIIPMKEYD---DDKFLFMATKNGMVKKTPMMEYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++ V+      DI L TK+GQC+RF  + +RV  GR S+GV G+ L 
Sbjct: 640 NGLQAIVLREDDELIEVKATDNSKDIFLITKMGQCIRFNETDVRV-TGRVSMGVIGMKLN 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+ M +                    ++ LI                   +SE   
Sbjct: 699 DDDEVVGMQM----------------DTQGEKLLI-------------------VSENGM 723

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +    ++F     +K  GK    Y  +I+ ++GK               +V    V+D+
Sbjct: 724 GKRTPIDEF---TPQKRGGKGVLCY--KITEKTGK---------------IVGAKLVHDD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAES 908
             I++++++G +IR+ V +I +  R T GV + +  +  D RV S+ ++R+     E E 
Sbjct: 764 HDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVASIAKVRDDGSKSEGEG 823

Query: 909 TE 910
            E
Sbjct: 824 LE 825


>gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
 gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
          Length = 842

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/883 (42%), Positives = 553/883 (62%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V++NP++    LME+I GPDFPTGA+++GR+GI  AY TGRGSIV+R
Sbjct: 182 PHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVMGRSGIHRAYDTGRGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L ++KRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYILHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELMQR           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E ++L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDALIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   R+  II +E+  VK +    RRT ++ G +L +EDED I  ED+++T+S++GY+KR
Sbjct: 456 SKPERVQTIIIEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+   + E +  + Y  F TK G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDDGETIQTIINARKVEVA--DKYFFFTTKGGVVKRTSASEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ T+ G  VRF  S+IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEDDELINVLLTDGTEDIIIGTRSGYSVRFNESSIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+                       A R  I+ D E                    
Sbjct: 693 DEDMVV----------------------GASR--ITDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++E G+GKRT++ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 709 ---------VLIITENGYGKRTAASEYPTKGRGGKGIKTANITAKN--GPLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + ++++++KG +IR  ++ +    RAT GV +    +D ++V+
Sbjct: 758 EDMMIITNKGVIIRTSISNVSQTGRATLGVRVMRLDQDSKIVT 800


>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
 gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
 gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 860

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/871 (42%), Positives = 530/871 (60%), Gaps = 58/871 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   LIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMRYTESRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  + + LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 RPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG +A+I NP+I    LM+II GPDFPTGA ILGR+GI+ AY TGRGSI +RGV+
Sbjct: 188 LGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSITMRGVA 247

Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE        DR+ I+VTE+PYQ NKAA++E+IA+LV +K+I  IAD+RDESDR G R+
Sbjct: 248 SIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY+ T +QS F  N++AL    PE  T+   L  F  FR E + 
Sbjct: 308 VIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEFRIETIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+ NLD V+R+IR + +  +A+ EL++           
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVE----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ  AIL+++L RLT L  D I  E + L  +I +  DI
Sbjct: 417 ---------------GFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+  II++EL  +K    TPRRT IV+   ++ D D I  +  ++ ++  GY+KR
Sbjct: 462 LARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIANDQALILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P S +  Q R  +G++   ++D+D V        H  VLFFS  G VY    +++PI S
Sbjct: 522 MPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIAS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + + E+IT+++   E +   ++ Y +  TK G +++  LS F  I  
Sbjct: 582 RTARGVPIVQMLPIPKDEKITSLVSVSEFD---DDTYFIMLTKQGYIKKTALSAFSNIRA 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L   D++  V     E+ +++ ++ G  + F      + A GR + GV+ + L
Sbjct: 639 NGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD +ISM I+    +     I           L  GDT+ I                 
Sbjct: 699 RSGDALISMDIL---PSQVVANIAVGSEDEPDEDL-GGDTDAI----------------- 737

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +E      ++L V+ KGFGKR     FR+ +R+G G++A      ++   LVA+  VN 
Sbjct: 738 LEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDD--QLVALHVVNA 795

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +D++++V+++G +IR  VN+I   SR+  GV
Sbjct: 796 DDELMIVTNRGIIIRQSVNDISPQSRSATGV 826


>gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
 gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
          Length = 862

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/894 (38%), Positives = 544/894 (60%), Gaps = 87/894 (9%)

Query: 8   SDEEEEKG----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQ 62
           ++EE+  G    I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M  +
Sbjct: 17  TEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRILYDMSAE 76

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  +K   K ARI G+V+GK+HPHG++++Y+A+ RMAQDWS+R  L++GQGNFGS+DG
Sbjct: 77  LNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGNFGSMDG 136

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+QK    ++ D+ KDT+D+  N+D +  EP VL  + P +LVNG  GI
Sbjct: 137 DSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLVNGASGI 196

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEV+D C A +DNP+I  + L++ ++GPDFPTG +I G  G++ A  
Sbjct: 197 AVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIYGYEGVREALL 256

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG +V+R  + IE T+  RE IV+TEIPY VNKA M++KIA+L+ EK+I  I+ + DE
Sbjct: 257 TGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEGISYINDE 316

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+++ LK  A A V+LN LY+ T LQ+ F+VN +AL   +P    L+ +++ FV
Sbjct: 317 SDRNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALVNGRPMMLNLLDLVQHFV 376

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+VRRT++ L KA  R H+++GL IA  N+DE++ IIR + NP+ A++ +M+R  
Sbjct: 377 EHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAKQAMMER-- 434

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q  AI+E+RL  LTGL  D +  E N L  
Sbjct: 435 ------------------------FSLSDAQASAIIEMRLRALTGLEHDKLVAERNELEA 470

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I    D+L SR   + I+K ELL VK +    RR+ IV    +   ED    ++MV+T+
Sbjct: 471 QIAYFNDVLGSRELQMKIVKDELLEVKAKYGDERRSEIVYASEEFNPEDFYADDEMVITI 530

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SHLGY+KR PL+ YR Q RGG G  G   RDEDF+  +++ + H ++LFF+  G  Y  K
Sbjct: 531 SHLGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKGRCYWLK 590

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRN 660
           V+ +P G+  ++G+A+ N++ +   +++   +     +D    NN Y++  TK G +++ 
Sbjct: 591 VYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKDGTIKKT 650

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KL  + +  ++G  A+ +   D+++  +  +   ++++  + G+ +RF  + +R   GR 
Sbjct: 651 KLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVRPI-GRV 709

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             GVRGISL +GD+V+ M             IC                           
Sbjct: 710 GAGVRGISLDEGDEVVGM-------------IC--------------------------- 729

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N S           Q +L +SE G+GKRT   ++RI+NR GKG++  ++++  + G 
Sbjct: 730 IEPNSS-----------QDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITE--KTGK 776

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           L+++  V D + +++++  G  IR  V++IR+A RAT+GV I +  + + + SV
Sbjct: 777 LISIQAVTDENDLMIINRSGLTIRTAVDQIRVAGRATQGVRIINLREGDAIASV 830



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 61/114 (53%), Gaps = 9/114 (7%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++ ++T+S  G+ KRT   ++R  NR G G +    S   +   +  ++    ++ ++  
Sbjct: 524 DEMVITISHLGYIKRTPLAEYRTQNRGGVGAKG---SATRDEDFIEHIYMATMHNTMLFF 580

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERV---VSVERIRESEIVD 904
           ++KG    + V EI   +R++KG  I +  +   D++V   ++V+R+ ++E V+
Sbjct: 581 TEKGRCYWLKVYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVN 634


>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
 gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A
 gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
          Length = 827

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/880 (41%), Positives = 545/880 (61%), Gaps = 93/880 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F + N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-ESN 634

Query: 670 RSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           RS  I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV GI
Sbjct: 635 RSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREI-GRTTRGVIGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+  A+V+  D +                                        
Sbjct: 694 KLNENDFVVG-AVVISDDGNK--------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V
Sbjct: 714 ------------LLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQ--KTGNLVGVISV 759

Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           +D N  +++++    +IRV + +IR   R   GV + +TA
Sbjct: 760 DDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  +    + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 813

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/894 (41%), Positives = 560/894 (62%), Gaps = 92/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A ++NP+I +  L +II+GPDFPTGA ILG+ GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A+A+++LN LY+ T L++ F +  +AL    P+   L  ++K +V  +++VV
Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR               S++   IK 
Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIR--------------SSYDNDQIKK 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           + +                L++ Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 409 IFN------------EKFGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL+   +L+ +I++E+L +K++    RRT+IV  EG  D+E+   I +ED++++++H GY
Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEE--LIEKEDVLISLTHDGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY  K + +P
Sbjct: 515 IKRLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
             S Q+RG+A+IN++SL+  E+IT IM     +E S     +VF T++G +++     F 
Sbjct: 575 EASRQSRGQAIINLISLSSDEKITDIMELSNLNEKSQ----LVFQTENGKIKKTDAELFT 630

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I R+G IA+ L++ D ++S+    +  DI++TTK G  ++F  S IR   GRN+ GVR 
Sbjct: 631 NIQRNGIIAISLENGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRA 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D+V+SM                                             NI 
Sbjct: 690 IRLGEDDKVVSM---------------------------------------------NIV 704

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+        E +++ V+  GFGK+TS  +F   NR GKG+R   +++  +   +VA  P
Sbjct: 705 ED--------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTKDVVATLP 754

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERIRE 899
            N +D I++VS KG +IR+   +I    R T GV + +    E  +VSV +  E
Sbjct: 755 ANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDFIVSVTKYYE 808


>gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
 gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
          Length = 812

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/881 (41%), Positives = 547/881 (62%), Gaps = 96/881 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILALIDNKDIEILELMNFIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE+K+G   
Sbjct: 249 NGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R EV+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFEVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYG------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++L+  S++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQR
Sbjct: 463 MKKELLELKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+RG+ + N
Sbjct: 523 RGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLIGN 582

Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE++     I  F PE E       +VF TK+G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVRDTIVIKEFVPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K+   D+I+ V   E  T+E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KIKEDDDIIFVGLIEDVTKE-EILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + ++  G +IR  ++EI    RAT+GV I   A +E+V ++
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800


>gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 847

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/886 (41%), Positives = 537/886 (60%), Gaps = 71/886 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +MG +WNK Y K ARI G V+GK
Sbjct: 17  LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YDA+ RMAQ++SLR  LI+GQGNFGSVDGD  AA RYTE RL K +H +L 
Sbjct: 77  YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL KDTV++  NYD +   P V+  + PN+L+NG  GIAVGMATNIP HN+GE+++ C+A
Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-IEKTSGDR 263
            +DN +I +  LM+ + GPDFPT  +I G  GI++AY+TGRG I IR  S  I      R
Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIKGIEDAYSTGRGKIYIRANSKIISDNKTKR 256

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E I++ EIPYQVNK  ++EKIA+LV+EK+I  I+ LRDESDR G R+V+E+KR    +++
Sbjct: 257 ESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEIV 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY  T LQ  F +NMVAL   +P+  +L  IL  F+  R  ++ R+T + L K   R
Sbjct: 317 LNNLYSMTQLQISFGINMVALCYGQPKTLSLKKILSYFLYHRRVIITRKTNFELKKIYYR 376

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI------KDLIDLIDDS 437
            ++L    IA+ N+D V+ +I+ S + E A+ +L+   W+ ++I      K LI      
Sbjct: 377 LNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFSKK 436

Query: 438 SYTIGSDGT----MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              I S+       ++S+ Q +AIL+LRL +L  L    +  E   L  +  +   IL  
Sbjct: 437 Q-KINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILKY 495

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+ELL +K E +  RRT+I++  +++  ED I ++D++VT+SH GYVK  PL
Sbjct: 496 PDELTNSIKKELLILKQEYNDKRRTKIIKKPVNINIEDLINQKDVIVTLSHQGYVKYQPL 555

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y AQ RGGKG+S   ++++DF+    + +TH S+L FSS G VY  K+++LP  S  +
Sbjct: 556 KDYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIFQLPENSRGS 615

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            GK +IN+L L   E IT I+PF + E     LYV  AT  G V++  L +F +   SG 
Sbjct: 616 IGKPIINLLPLESKEYITAILPFRKYEKK---LYVFMATASGIVKKTALHEFSRPRSSGI 672

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L+S D+++  +      + +L ++ G+ VRFP + +R   GR + GV+GISL  GD
Sbjct: 673 IAVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNM-GRAASGVKGISLIPGD 731

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ I                                   KN+S              
Sbjct: 732 RVVSLIIP----------------------------------KNNSP------------- 744

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILTV++ G+GKRT   ++   +R+ +G+ +  VSK N  G +V    VND DQI
Sbjct: 745 ------ILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRN--GKVVGAVQVNDYDQI 796

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++++D GTL+R+ V+E+ I  R T GV +   + +  VV ++R+ E
Sbjct: 797 MIITDSGTLVRIRVSEVSIVGRNTHGVRLIRISNNNNVVGLQRVVE 842


>gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 806

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/883 (40%), Positives = 546/883 (61%), Gaps = 89/883 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++K
Sbjct: 3   ERKINIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN+
Sbjct: 123 TELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + +
Sbjct: 183 APHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVRL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R+
Sbjct: 243 RAEARIEESKG-RFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VIE KR A+ +++LN LY+YT +Q+ F  +N+  +NG  P+  TL  ++  ++  +E VV
Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S   + A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMERFG------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V                                    D+     ISE  
Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                            G+GK+T   ++   NR GKGIR   ++K  + G +     + +
Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            D+I+L+S +  +IR+    I   SR T GV++ +T K E  +
Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAI 797



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K  +QFI+ +++KG  K+TS   +   N    GI A    K +E   L+ V  V  N+++
Sbjct: 603 KENDQFIIFITKKGKVKKTSLSLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNEEV 657

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+S + ++++E +
Sbjct: 658 IIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707


>gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
 gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
          Length = 832

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/901 (39%), Positives = 540/901 (59%), Gaps = 91/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M ++    +K + KCA
Sbjct: 9   INEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ WS R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV++    +IDN      D D+D +++I++GPDFPTGA ILGR GI+ AY TGRG I++
Sbjct: 189 VEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHILGRAGIEEAYRTGRGKIIV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE  +  + +IVVTE+PY VNKA ++E IA++V+ KRI  I +LRDES+R G R+
Sbjct: 249 RAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDESNRNGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +  +IL +LY++T LQ+ F  NM+ L   +P    L  +L  ++  +E VV 
Sbjct: 309 CIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLVNNEPVVMNLKQMLGFYLEHQENVVR 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y LNKA +RAH+L GL +A+  +DEV+ IIR S     A+ +L+            
Sbjct: 369 RRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLI------------ 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   L +VQ +AI+++RL  LTGL R+ ++ E +SL   IKE  +I
Sbjct: 417 --------------GRFSLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELKEI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L    +LLG+IK+E+  ++D+    RR++IV    D+ ++D I  E+ V+ ++++GY+KR
Sbjct: 463 LGDIKKLLGVIKEEINVIRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMTNMGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   +EDF+ DL + +TH  +LFF++ G VY+ K +++P  S
Sbjct: 523 MTTDNFKSQNRGGKGIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKAYQIPEAS 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L   E++  ++   ++++     Y+  ATK G V++  LS++  I +
Sbjct: 583 RTARGTAMVNLLQLQPDEQVKAVINIRKEKTDG---YLFMATKRGIVKKTALSEYANIRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D+++ V+    ENDI L TK G C+RF    +R   GR S+GV G+++ 
Sbjct: 640 TGLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRFNEKDVRP-TGRTSMGVIGMTID 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D++++M +                           DT                     
Sbjct: 699 DTDEIVAMQL---------------------------DT--------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q  KL     L VSE G GKRT   +F   +R GKG++   +  + + G ++    VNDN
Sbjct: 711 QGAKL-----LIVSENGLGKRTEISEFTTQHRGGKGVKCYKI--VEKTGLVIGAKSVNDN 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAEST 909
           ++I+L++  G +IR+ V  I    R T GV + +   D  +  + ++RE +    E E+T
Sbjct: 764 NEIMLITKAGIIIRMAVESISTLGRITSGVKLMNVDGDNVIAKIAKVREDDKAAAEEETT 823

Query: 910 E 910
           E
Sbjct: 824 E 824


>gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908]
 gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018]
 gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017]
          Length = 828

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/915 (40%), Positives = 561/915 (61%), Gaps = 100/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+  ++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTTIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+++P  S  A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624

Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
           R  LS+F   NR  SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R 
Sbjct: 625 RTNLSEF-GGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASHLGIFIKFPLEDVRE 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI L + D V+  A+V+  D++                            
Sbjct: 684 I-GRTTRGVRGIKLNENDFVVG-AVVISDDSNK--------------------------- 714

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L+VSE G GK+T +  +R  +R GKG+    +++ 
Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ- 749

Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + G LV+V  V+D N  +++++    +IRV + +IR   R   GV + +T   ++VV V
Sbjct: 750 -KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTT--DKVVYV 806

Query: 895 ERIRESEIVDEAEST 909
               + E  +  E++
Sbjct: 807 NSCPKEEEPENLETS 821


>gi|307693840|ref|ZP_07636077.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
          Length = 852

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/895 (40%), Positives = 546/895 (61%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +  +  EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  +K + K A
Sbjct: 19  IKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDGLTSDKPFKKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              G+V+G+YHPHG+ ++YDAL R+ QD+S+R +L++G GNFGS+DGDPPAA RYTE R+
Sbjct: 79  TCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNFGSIDGDPPAAYRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ +L D+ K+TVD+ PN+D S +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 139 SKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + V+DN +  LD LME I+GPDFPT  +I+GR+GI+ AYATG+G I +R  + 
Sbjct: 199 TEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIMGRSGIRAAYATGKGHIRVRARTE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+   DR +I+VTEIPYQVNK  +++ +A+ V +KR+  I+D+RDESDR G R+VIELK
Sbjct: 259 FEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGISDIRDESDRNGMRIVIELK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           R A+  V+LN+L   T LQ  F++NM+AL  +  +P+  TL  IL  ++AF+E+++ RRT
Sbjct: 319 RDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLREILDEYIAFQEQIITRRT 378

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y   KA++RAH+L GL IA  N+DEV++IIR S +   A+  LM R             
Sbjct: 379 IYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYD--NAKERLMTR------------- 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L +VQ +AIL++RL  L GL R+ +  E   L   I     +LS 
Sbjct: 424 -------------FGLDDVQAQAILDMRLKALQGLDREKLEAEYKELEERIAYYDKLLSD 470

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L  ++K EL  ++D+    R+T I     D++ ED I  E  V T++  GY+KR P+
Sbjct: 471 EGLLRQVLKDELTEIRDKYGDQRKTEIAFVEDDLDIEDLIEEEQCVFTLTQAGYIKRTPV 530

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y AQ +GG+GR G+  RDED V D+F  STH  + FF+  G VY++K +++P     A
Sbjct: 531 SEYAAQSKGGQGRKGITTRDEDCVVDVFTASTHDYLFFFTDTGKVYRKKGYQIPESGKTA 590

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++NIL + QGE++ T++   E ++   +LY+V  T++G V+R  ++    I  SG 
Sbjct: 591 KGTNIVNILQVEQGEKVQTMIHTRELDNP--DLYLVMVTRNGTVKRLPVTALKNIRNSGI 648

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A++L+  D+++SV        IL+ T  G  V F  + +R   GR++VGVRGI L +GD
Sbjct: 649 RALRLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRPM-GRDAVGVRGIRLREGD 707

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S A                       R  +G T                        
Sbjct: 708 YVVSAA-----------------------RATAGRT------------------------ 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +LT++EKG+GKRT   D+RI+NR G GI+   V++  + G +V +  V+ ++ +
Sbjct: 721 ------VLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTE--KTGKIVGIKVVDGSEDL 772

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIVDEAE 907
           +LV+  G LIR  V+ IR A RAT+GV++    ++ ++V+S+      E  + A+
Sbjct: 773 LLVTQAGILIRTHVDAIREAGRATQGVIVMRFKEEGDKVISLALAEREETAEVAQ 827


>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
 gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
          Length = 833

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/904 (41%), Positives = 555/904 (61%), Gaps = 96/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 13  ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 72

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 73  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 132

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 133 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 192

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 193 PHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 253 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 311

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++R
Sbjct: 312 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 371

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R           
Sbjct: 372 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLMER----------- 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 421 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 465

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV++SH GYVKRV
Sbjct: 466 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSHKGYVKRV 525

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 526 DLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 586 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-GGN 639

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R   GR++ GV G
Sbjct: 640 RSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI-GRHTRGVMG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V+  D +                                       
Sbjct: 699 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 719

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  
Sbjct: 720 -------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQ--KTGNLVGVIS 764

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D N  +++++    +IRV + +IR   R   GV + +TA  ++VV V    + E  + 
Sbjct: 765 VDDENLDLMILTASAKMIRVSIKDIRETRRNASGVKLINTA--DKVVYVNSCPKEEEPEN 822

Query: 906 AEST 909
            E++
Sbjct: 823 LETS 826


>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
          Length = 855

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/903 (40%), Positives = 537/903 (59%), Gaps = 95/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS R +L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 SRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E++   V +IDN      D  ++ LMEI++GPDFPTGA ILG+ GI+ AY TG+G I +
Sbjct: 189 RELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRTGKGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+VTEIPY VNKA ++EKIAELV++KR+  I DLRDES+R+G R+
Sbjct: 249 RAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+++LNQL ++T LQ  F VNM+AL   +P+   L  +L  ++  +++VV 
Sbjct: 309 CIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLDHQKDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL  A+  +DEV+RIIR S     A+  LM+R          
Sbjct: 369 RRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL  LTGL R+ + NE   L   I E   I
Sbjct: 419 ----------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  ++LL +IK+E+  + D+    RRT+I     DM  ED I  ED+VV +++LGY+KR
Sbjct: 463 LADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAITNLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   DED++ +L + +TH  ++FF++ G VY+ K + +P   
Sbjct: 523 MSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG A++N++ L  GE+IT  +P  E DE      ++  ATK+G V+R  + ++  + 
Sbjct: 583 RTARGTAIVNLIQLQPGEKITATVPMKEFDEDK----FLFMATKNGMVKRTPMKEYENVR 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+      DI L TK G C+RF  + +R+  GR S+GV G+  
Sbjct: 639 KNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRI-TGRVSMGVIGMKF 697

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D++I M +                                             S+  
Sbjct: 698 DSDDEIIGMQMA--------------------------------------------SQGE 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C         +L VSE G GKRT   +F    R GKG+R   +++  + G LV    V++
Sbjct: 714 C---------LLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITE--KTGYLVGAKLVDE 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV--SVERIRESEIVDEAE 907
             QI+L++++G +I++ VN I I  R T GV +     +  VV  S+ ++RES   DE E
Sbjct: 763 GRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVASIAKVRESS-QDEDE 821

Query: 908 STE 910
             E
Sbjct: 822 ELE 824


>gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
 gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
          Length = 806

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/883 (40%), Positives = 546/883 (61%), Gaps = 89/883 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++K
Sbjct: 3   ERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN+
Sbjct: 123 TELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + +
Sbjct: 183 APHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVRL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R+
Sbjct: 243 RAEARIEESKG-RFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VIE KR A+ +++LN LY+YT +Q+ F  +N+  +NG  P+  TL  ++  ++  +E VV
Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S   + A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMERFG------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V                                    D+     ISE  
Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                            G+GK+T   ++   NR GKGIR   ++K  + G +     +  
Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +D+I+L+S +  +IR+    I   SR T GV++ +T K E  +
Sbjct: 755 DDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAI 797



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K  +QFI+ +++KG  K+TS   +   N    GI A    K +E   L+ V  V  N+++
Sbjct: 603 KENDQFIIFITKKGKVKKTSLSLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNEEV 657

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+S + ++++E +
Sbjct: 658 IIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707


>gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
 gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
          Length = 822

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/885 (40%), Positives = 541/885 (61%), Gaps = 88/885 (9%)

Query: 10  EEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           EEE K    +  V I+ EM+ ++L Y+++VI+ RA+PD+RDG+KPVHRRIL  M Q+G+ 
Sbjct: 2   EEENKRYDYVEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGIT 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
               + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R  L++G GNFGS+DGD  A
Sbjct: 62  SGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGAA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K +  ++ D+ KDTVDF PNYDG   EPVVL +R PN+L+NG  GIAVGM
Sbjct: 122 AMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E +    AV+DNPDI +  LME+I+GPDFPTG +ILGR GI+ A+ TGRG
Sbjct: 182 ATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIILGRKGIRQAFETGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI+IR    +E+ +  ++QI+  EIPYQVNKA ++ K+A L+R+K I  +  L DES+R+
Sbjct: 242 SIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNRE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+ A  +VILNQL+R T LQ+ F +NM+AL   +P++  L  I+  ++  + 
Sbjct: 302 GIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLALENGRPKQLPLKDIIHDYIDHQV 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VVVR+T++ L KA+DRAH+L GL IA+ ++DEV+ +IR S   E    +          
Sbjct: 362 DVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKKDEAGLSQ---------- 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
             DL D                LS +Q +AIL ++L RL+GL RD I NE   L + I++
Sbjct: 412 --DLCD-------------AFGLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIED 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++  R+L II+ +L  +  +    RRT I +  +DMEDED I  ED+++T++  G
Sbjct: 457 LKDILANHDRVLQIIRDDLNEIDQKYGDERRTEISDASVDMEDEDLIPVEDVIITLTESG 516

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YRAQ RGG+G   + + +ED +  +  +STH  +L F+  G VY+ K + +
Sbjct: 517 YIKRQLVDTYRAQNRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYNV 576

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  ++G  ++N+++L +GE++  ++  P+D+ S     ++F TK+G V+R  +S+F 
Sbjct: 577 PSGSRTSKGIPIVNLMTLEKGEKVNVLVAVPKDDESET---LLFVTKNGIVKRTSVSEFE 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            INR+GKIA+ L   DE+  V+  T +++++++   G+ VRF    +R+  GR++ GV G
Sbjct: 634 NINRNGKIAISLKPDDELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIM-GRSASGVLG 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +   G +V+  A+                                       S EG+  
Sbjct: 693 FN-CDGSEVVGAAL---------------------------------------SSEGDT- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L VSE G+GKR+   D+R+++R  KG+   ++++  + G L+ +  
Sbjct: 712 -------------VLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITE--KTGKLMCMRA 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V   +  ++V+  G +IRV +  + I  R T+GV + +   D +V
Sbjct: 757 VTGKEDAMIVASDGIMIRVALENVGIYGRNTQGVRLINLNGDAKV 801


>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
          Length = 844

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/903 (41%), Positives = 542/903 (60%), Gaps = 98/903 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DEMQN Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K+Y K ARI G+
Sbjct: 16  INDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLGSDKQYRKSARIVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            MGKYHPHG+++IY A+ RMAQ++S R  L++GQGNFGS+DGD PAA RYTE R+ K   
Sbjct: 76  TMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPAAMRYTEARMSKMTA 135

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDTV+FRPN+D S +EP VL +R+PN+LVNG  GIAVGMATNIP HNL EVV+
Sbjct: 136 LMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVVN 195

Query: 201 GCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           G + +IDN           + +++ LM II GPDFPTGA I GR GI  AY TGRG + +
Sbjct: 196 GVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIYGRYGIDQAYRTGRGKVKV 255

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +  + IE   G + +IVVTEIPY VNK++++EK+A+LV+E++I  I D+RDESDR G  +
Sbjct: 256 KAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDGITDIRDESDRNGISM 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R  +  VILNQLY+YT LQ  FS+NM+AL   KP+   L  IL+ ++  ++EVV 
Sbjct: 316 VIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDKPKVLNLKQILEEYLKHQKEVVT 375

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA  RAH+L GL  A+ N+D VV +IR S N + A+ +LM+           
Sbjct: 376 RRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKDKLME----------- 424

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + L+E+Q +AI+E+RL  LTGL R+ I  E   L  +I+    I
Sbjct: 425 ---------------AIELTEIQAQAIVEMRLRALTGLEREKIDQEYAELLEKIEYLKSI 469

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  +LL +IK E+  VK +    RRT I     + + ED I  E++VVT++ LGY+KR
Sbjct: 470 LASEYKLLSVIKDEITEVKQKYGDGRRTDITIDEDEYDIEDLIDEENIVVTITQLGYIKR 529

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+ Q RGGKG  GV   ++DF+  LF+ +    ++FF++ G  Y+ K +R+P   
Sbjct: 530 IPLDTYKNQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAG 589

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A++N+L L++ E+IT + P  E E   +N ++   TK G +++  L DF  I +
Sbjct: 590 RTARGTAIVNLLELDKDEKITAVFPIKEFE---DNTFLTMVTKKGQIKKTPLKDFRNIRK 646

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ L+  DE++ V   T ++ IL+ T+ GQ + F  + +R   GR + GVR I+L 
Sbjct: 647 GGLIALSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRPM-GRTARGVRAINLG 705

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VI   +         E+I         +R               + +E   +++R 
Sbjct: 706 ETDEVIGATVPKEG-----EQILTTTEKGLGKR---------------TQIEAFRAQKRG 745

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                           G G R +    +I+ ++G  I    VS+ +E             
Sbjct: 746 ----------------GKGLRIN----KITEKTGCIIGVASVSEEDE------------- 772

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI---VDEAE 907
             ++L++ +G +IR+ V +I    R  +GV + + A D +VV +E++ E  I   V+EA 
Sbjct: 773 --LLLITSQGIIIRIKVAQISSIGRNAQGVKLINVADDVQVVCMEKVNEEFIDDNVEEAS 830

Query: 908 STE 910
            TE
Sbjct: 831 ITE 833


>gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14]
          Length = 849

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/900 (40%), Positives = 551/900 (61%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ K+TVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID+   D     ++ ++EI++GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K+I  I DL D+S+R+G R+
Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   L+ +L+ ++  +E+VV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVDNQPKVMNLLEMLQYYLRHQEDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA++RAH+L GL IA+ N+DEV+RIIR S N + A+ EL++R          
Sbjct: 369 RRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKRFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+VQ +AI+++RL  LTGL R+ I  E   L  +I+E   I
Sbjct: 421 ------------------LSDVQAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEYKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +  LLG+IK+E+L + ++    RRT+I     D+  ED I RE++V+T++ LGY+KR
Sbjct: 463 LADKKLLLGVIKKEILVIAEKYGDDRRTKIGFDEFDISMEDLIPRENVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   ++D++ +LFI ++H  ++FF++ G VY+ K + +P   
Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT I+P  E E      Y+  AT+ G V++  + D+  + +
Sbjct: 583 RTARGTAIINLLQLMPEEKITAIIPLREYEEGK---YLFMATEKGLVKKTPIQDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D+++ V+      DI L TK G C+RF  + +R   GR S+GVRG++L 
Sbjct: 640 TGLAAIVLREDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRS-TGRVSMGVRGMNLT 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI M                                +I S   D            
Sbjct: 699 DNDVVIGM--------------------------------QIESQGKD------------ 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSE+G GKRT   +F   NR GKG++   +++  + G +V +  V+++
Sbjct: 715 ---------MLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITE--KTGNVVGMKAVDED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +I++++ +G +IR+  ++I +  R T GV + +  +++ V SV ++R++    + E  E
Sbjct: 764 SEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVAKVRKASAEIDGEEVE 823


>gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
 gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
          Length = 851

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/897 (40%), Positives = 549/897 (61%), Gaps = 84/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDTRIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NPD     LM+++ GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R  SA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A++  + EV+
Sbjct: 303 ISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKDILVAYLTHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                         DG   LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 --------------DG-YALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ + R+  II  ELL ++ +    RRT +  G + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHQERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I  ++     E+S +  Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEDDEKIQAVISV-RGEASESKDYLFFVTRLGVVKRTAVSEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       IL+ T+ G  VRF   ++RV  GR++ GVRGI 
Sbjct: 636 RTNGLKALTLHDGDEVLSVQITNGTQSILIATQAGYSVRFAEDSVRVM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI   +V                               TS  N           
Sbjct: 695 LRDNDVVIGADVV-------------------------------TSSDN----------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKGFGK+T + ++ I  R GKGI+  +++  N  G L  +  ++
Sbjct: 713 -----------VLVITEKGFGKQTPASEYPIKGRGGKGIKTANITDKN--GVLAGMTIIH 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            ++ I++ + +G +IR   + +    RAT GV +    +  +V ++ ++ + ++ DE
Sbjct: 760 GHEDIMVTTTQGVMIRFAADSVSQTGRATLGVRLIRLEEGTKVATLTKVDQEDLPDE 816


>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
          Length = 817

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/882 (41%), Positives = 535/882 (60%), Gaps = 90/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   S+ +EM+ SYL YA++VI+ RA+PD+RDGLKPV RR+L+ M ++G  ++K Y K A
Sbjct: 6   LIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+ +GKYHPHG+  +Y+A+ RM Q +S+R  LI+GQGNFGSVDGD PAA RYTE RL
Sbjct: 66  RVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRYTEVRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TVDFR NYDGS  EPVVL AR+PNVLVNG  GIAVGM+TNIP HNL
Sbjct: 126 APIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + ++++P   +D LM+ ++GPDFPT   I GRTGI++AY TGRGS+ +R  + 
Sbjct: 186 GEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFICGRTGIRDAYLTGRGSVTLRARAA 245

Query: 256 IEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           I+  +G    +R+ IVVTE+PYQVNKA++LEKIAELV EK+I  IADLRDESDR+G RVV
Sbjct: 246 IDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDREGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A A V+LN L++YT +QS   + M+A+   +P+   L+ +L  FV  R EVV R
Sbjct: 306 IELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGRPQVLNLVEMLNYFVEHRREVVRR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA  R H+L GL  A+  L+ ++ +IR + +   AR  LM R           
Sbjct: 366 RTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTR----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS VQ +AILE++L RLT L R  +  E   L   + E  +IL
Sbjct: 415 ---------------FALSRVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELREIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L  +I QEL  V+    TPRRT+IV+    D   ED I +E++V+T++  GY+KR
Sbjct: 460 DKEAKLREVIVQELQEVRKAYGTPRRTQIVDCESTDFTIEDLIPKEEVVITITREGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q+RGG GR G+  + ED V  L+I STH+ +L F++ G VYK +V  +P  +
Sbjct: 520 TPVSAYRTQKRGGVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIPDAA 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              RGKA++N++ L +GERI   +P  E  S     ++VFAT+ G +++ +LS++  I  
Sbjct: 580 TSGRGKAIVNLIELPEGERIAGTIPVREFASGQ---FIVFATRRGIIKKTELSEYANIRS 636

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G +AM +   DE+++V+       IL++T  GQ + F  S +R   GR + G+ GI L 
Sbjct: 637 NGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAICFKESDVRP-TGRMAQGIIGIRLR 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V  M++V                         G TE+I SL               
Sbjct: 696 ENDYVTGMSVV-------------------------GRTEDILSL--------------- 715

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                        SE G  KRT   ++ + +R G+G+    V++    G ++   PV+++
Sbjct: 716 -------------SELGLSKRTPITEYPVHHRGGQGVATMYVTE--RTGGVIKTLPVHED 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D+ ++++ +G + R+ V+++R   R  +GV + + A+ +RVV
Sbjct: 761 DEFMVITQQGQVARLKVSDVRQTKRLAQGVKVIALAEGDRVV 802



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 6/112 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  KE+ ++T++ +G+ KRT    +R   R G G R       +E+ +L   +  + +
Sbjct: 499 EDLIPKEEVVITITREGYIKRTPVSAYRTQKRGGVGRRGMTTKAEDEVESL---YIASTH 555

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
             +++ + KG + +V V+EI  A+ + +G   V +    + ER+     +RE
Sbjct: 556 SFLLIFTAKGQVYKVRVHEIPDAATSGRGKAIVNLIELPEGERIAGTIPVRE 607



 Score = 38.1 bits (87), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 19/209 (9%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +V  +  G +K+  LS Y   R  G    G+   DE         S H  +  F     
Sbjct: 613 FIVFATRRGIIKKTELSEYANIRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAI 672

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERIT--TIMPFPEDESSWNNLYVVFATKHG 655
            +KE   R     P  R    I  + L + + +T  +++   ED  S + L        G
Sbjct: 673 CFKESDVR-----PTGRMAQGIIGIRLRENDYVTGMSVVGRTEDILSLSEL--------G 719

Query: 656 NVRRNKLSDFIQINRSGK--IAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R  ++++   +R G+    M +  R   ++      ++++ ++ T+ GQ  R  +S 
Sbjct: 720 LSKRTPITEYPVHHRGGQGVATMYVTERTGGVIKTLPVHEDDEFMVITQQGQVARLKVSD 779

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R    R + GV+ I+LA+GD+V+   +V
Sbjct: 780 VRQ-TKRLAQGVKVIALAEGDRVVDACLV 807


>gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
 gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
          Length = 806

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/883 (40%), Positives = 545/883 (61%), Gaps = 89/883 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++K
Sbjct: 3   ERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEVMGKYHPHG+ AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YSKSARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN+
Sbjct: 123 TELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + +
Sbjct: 183 APHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVRL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R+
Sbjct: 243 RAEARIEESKG-RFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VIE KR A+ +++LN LY+YT +Q+ F  +N+  +NG  P+  TL  ++  ++  +E VV
Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S   + A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMERFG------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V                                    D+     ISE  
Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                            G+GK+T   ++   NR GKGIR   ++K  + G +     +  
Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            D+I+L+S +  +IR+    I   SR+T GV++ +T K E  +
Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAI 797



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K  +QFI+ +++KG  K+TS   +   N    GI A    K +E   L+ V  V  N+++
Sbjct: 603 KENDQFIIFITKKGKVKKTSLSLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNEEV 657

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+S + ++++E +
Sbjct: 658 IIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707


>gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 840

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/900 (39%), Positives = 543/900 (60%), Gaps = 95/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I D+M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  Y
Sbjct: 3   EGEKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQDW++R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+++ A  +L D+ K+TVD R N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA ++N +I +D L+E I+ PDFPTG  I G  G++ A+ TGRG I+IR
Sbjct: 183 PHNLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIYGYDGVREAFKTGRGRIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G +H E+   +R+ I+VTEIPYQVNKA M+++ A+LV+E ++  IAD+ DE+ + G R+V
Sbjct: 243 GKAHFEEVD-NRDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+ A  +V+LN L+++T LQS FSVN +AL   +PE+  L  ++  FV  R +VV R
Sbjct: 302 YVLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALVNGRPEQLNLKDLIYHFVEHRHDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KA+++AH+L G    +A    LD  + IIR S NP+ A+ EL++         
Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKE-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q++AIL+LRLARLTG+  + IR E   +   I +  
Sbjct: 414 ------------------FELSEIQSQAILDLRLARLTGMELNKIREEYEQIMALIMDLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK EL+ VK +    RR+ I     D+  ED I  E +V+T+S+ GY+
Sbjct: 456 DILAHKERRTEIIKNELIEVKAKYGDDRRSIIEYSGGDISMEDIIPNEQVVITISNAGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P++ Y+ Q RGG G+     RD+DF+  LF+ + H  +LFF+  G  +  +V+ +P 
Sbjct: 516 KRTPVNEYKTQARGGVGQKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G    +G+A+ N+++++  + +   +   +  D+   N+ YV+ ATK G +++  L  + 
Sbjct: 576 GGRNTKGRAIQNLINIDSEDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G +A+ +   DE+L     T  + +++  K G+ +RFP   +R   GR+  GVRG
Sbjct: 636 RPRQNGIVAITIKEDDELLEARLTTGSSQVMMAVKSGKAIRFPEEKVRS-VGRSGSGVRG 694

Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           IS    K D+VI M  + +                                         
Sbjct: 695 ISFDDEKNDEVIGMITIENP---------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINE 837
                      KE+ +L VSE G+GKRT   D       +RI+NR GKG++   +++  +
Sbjct: 715 -----------KEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITE--K 761

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA+  V+  D +++++  G  IR+ V  +R+  RAT+GV + +  +++ + +V ++
Sbjct: 762 TGKLVAIKSVSQEDDLMIINKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVAKV 821


>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 813

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/894 (40%), Positives = 559/894 (62%), Gaps = 92/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A ++NP+I +  L +II+GPDFPTGA ILG+ GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR ++A+++LN LY+ T L++ F +  +AL    P+   L  ++K +V  +++VV
Sbjct: 303 IVIEVKRDSNANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR               S++   IK 
Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIR--------------SSYDNDQIKK 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           + +                L++ Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 409 IFN------------EKFGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL+   +L+ +I++E+L +K++    RRT+IV  EG  D+E+   I +ED++++++H GY
Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEE--LIEKEDVLISLTHDGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY  K + +P
Sbjct: 515 IKRLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
             S Q+RG+A+IN++SL+  E+IT IM     +E S     +VF T++G +++     F 
Sbjct: 575 EASRQSRGQAIINLISLSSDEKITDIMELSNLNEKSQ----LVFQTENGKIKKTDAELFT 630

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I R+G IA+ L+  D ++S+    +  DI++TTK G  ++F  S IR   GRN+ GVR 
Sbjct: 631 NIQRNGIIAISLEDGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRA 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D+V+SM                                             NI 
Sbjct: 690 IRLGEDDKVVSM---------------------------------------------NIV 704

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+        E +++ V+  GFGK+TS  +F   NR GKG+R   +++  +   +VA  P
Sbjct: 705 ED--------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTKDVVATLP 754

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRE 899
            N +D I++VS KG +IR+   +I    R T GV + +    E  +VSV +  E
Sbjct: 755 ANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDYIVSVTKYYE 808


>gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
          Length = 828

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/915 (40%), Positives = 562/915 (61%), Gaps = 100/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+++P  S  A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624

Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
           R  LS+F   NR  SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R 
Sbjct: 625 RTNLSEF-GGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVRE 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV GI L + D V+  A+V+  D++                            
Sbjct: 684 I-GRTTRGVMGIRLNENDFVVG-AVVISDDSNK--------------------------- 714

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L+VSE G GK+T +  +R  +R GKG+    +++ 
Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ- 749

Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + G LV+V  V+D N  +++++    +IRV + +IR   R   GV + +TA  ++VV V
Sbjct: 750 -KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYV 806

Query: 895 ERIRESEIVDEAEST 909
               + E  +  E++
Sbjct: 807 NSCPKEEEPENLETS 821


>gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27]
 gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27]
          Length = 833

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/904 (41%), Positives = 557/904 (61%), Gaps = 96/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 13  ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 72

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 73  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 132

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 133 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 192

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D    V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 193 PHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 253 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 311

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 312 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 371

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 372 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 421 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 465

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PR T I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 466 KSEDRLNGVVKTELLEVKEQFSSPRHTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 525

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 526 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 586 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 639

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV+G
Sbjct: 640 RSYSGIRAIVLDEGDELVSAKVVDKNVKHLLIASHLGIFIKFPLEDVREI-GRTTRGVKG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+ D V+  A+V+  D +                                       
Sbjct: 699 IRLAENDFVVG-AVVISDDGNK-------------------------------------- 719

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 720 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQ--KTGNLVSVIS 764

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+D N  +++++    +IRV + +IR   R   GV + +TA  ++VV V    + E  + 
Sbjct: 765 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCPKEEEPEN 822

Query: 906 AEST 909
            E++
Sbjct: 823 LETS 826


>gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
          Length = 826

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/880 (41%), Positives = 546/880 (62%), Gaps = 93/880 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  + V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F + N
Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-ESN 634

Query: 670 RSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           RS  I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV GI
Sbjct: 635 RSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVIGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+  A+V+  D +                                        
Sbjct: 694 RLNENDFVVG-AVVISDDGNK--------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V
Sbjct: 714 ------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISV 759

Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           +D N  +++++    +IRV + +IR   R   GV + +TA
Sbjct: 760 DDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  +    + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601


>gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 811

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/888 (40%), Positives = 547/888 (61%), Gaps = 96/888 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI +AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIDAYKTGRGKIKVRGKVDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L   +++  I
Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIETLIKELREVLEDNNKIYDI 462

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K++    RRT+I E  +++  ED I  E++++T ++ GYVKR+  S Y+AQR
Sbjct: 463 MKKELLELKEKYGDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+RG+ L N
Sbjct: 523 RGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSN 582

Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           I++L++GE++     I  F PE E       VVF TK G +++  L +F  IN SG IA+
Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------VVFITKKGLIKKTSLGEFKNINNSGLIAI 635

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           K    D+++ V   E   +E +IL+ T  G C RF    IR   GR++ GV+ I+L +GD
Sbjct: 636 KTREDDDLIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S  ++ + + D                                              
Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++++
Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E
Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807


>gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
 gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
          Length = 843

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/901 (41%), Positives = 542/901 (60%), Gaps = 89/901 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +I   +   + +   ++   M++S+L Y+++VI+ RA+PD+RDGLKPVHRRILF M + G
Sbjct: 16  VIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGLKPVHRRILFSMEKNG 75

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
                ++VK ARI+G+VMGKYHPHG+AAIYD++ R+AQDWS+R +L++GQGNFGS+DGDP
Sbjct: 76  WRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYMLVDGQGNFGSMDGDP 135

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE R+ K    LL DL K+TVDFR NYDG  +EP VL A+ PN+L+NG  GIAV
Sbjct: 136 PAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPAKLPNLLLNGQIGIAV 195

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           GMATNIP HNL E+VD  V +ID P D  L+ L++ ++GPDFPTG ++ G   ++ AYAT
Sbjct: 196 GMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTGGIVYGGDSMRQAYAT 255

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R ++ IE+T   + QIVVTE+PY VNKA ++E+IAEL +EK+I  I D+RDES
Sbjct: 256 GRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELHKEKKIT-IQDVRDES 314

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFV 362
            R   R+VIELK+ +    +LNQLY+ T+LQ+ F  NM+AL +G +P    L  IL+ ++
Sbjct: 315 ARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDGIQPRVLGLQDILEEYL 374

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ VV RRT++ L KA+DRAH+L G  IA+ N+DEV++IIR S N + A R LM +  
Sbjct: 375 KHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRASQNTDEAARNLMDK-- 432

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSEVQ ++IL L L  LTGL R  I +EL  L  
Sbjct: 433 ------------------------FKLSEVQAKSILALPLRTLTGLERQKIEDELAELRA 468

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVT 541
            I +   IL+    +L IIK ELL +K++    RRT+I+ + L    DE+ I  ED++V 
Sbjct: 469 LIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGKFSDEELIPDEDVIVL 528

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++   Y+KR  +S YR Q RGGKG+ G+  ++ D +  L   STH  +LFF++ G V++ 
Sbjct: 529 LTTENYIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTHEWLLFFTNRGRVFRI 588

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S  A+G A +N+L L   ERIT+I+    ++   ++ Y+  AT HG V++  
Sbjct: 589 KTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRL--EKGQKDDGYLFMATTHGTVKKTP 646

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L ++  I  +G IA+KLD  DE+  +   + +N+++++T  GQ +RF  S  R   GR++
Sbjct: 647 LKEYSNIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAIRFNESDARPM-GRSA 705

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L  GD+++ M                                           
Sbjct: 706 RGVRGIRLRPGDRLVGM------------------------------------------- 722

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                     +L  ++  +L VS+KG+GK T + +F    R G GI++  V+   + G +
Sbjct: 723 ----------DLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVGIKSAVVTA--KTGNV 770

Query: 842 VAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           VAV  +  +  +++++S KG  IRV + +I    R T+GV I   ++ + V S+  I E 
Sbjct: 771 VAVRSLEPEASEVLIISTKGQAIRVGLQDIPTLGRTTQGVRIMRLSEGDEVASLGIIPEQ 830

Query: 901 E 901
           +
Sbjct: 831 Q 831


>gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
 gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 859

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/883 (39%), Positives = 539/883 (61%), Gaps = 87/883 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +   
Sbjct: 3   DREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  TRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN+
Sbjct: 123 TESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +V
Sbjct: 183 PPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+ + + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G R
Sbjct: 243 IRSRAEIEQHN-NHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EVV
Sbjct: 302 IVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R         
Sbjct: 362 TRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS++Q R+I+++RL  LTGL RD +R E   +   I     
Sbjct: 413 -----------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+K
Sbjct: 456 LLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P G
Sbjct: 516 RTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEG 575

Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           +  A+G+A+ N+L+++  +++     I     D+   N+ Y++F TK G +++  L  F 
Sbjct: 576 AKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+G
Sbjct: 636 RPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVKG 694

Query: 727 ISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++L     D+V+ M  + H +                                       
Sbjct: 695 MTLDDDGEDEVVGMISIKHPE--------------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV +
Sbjct: 716 ------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVDI 761

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
             V D + +++++  G  IRV V ++ I  RAT+GV +   +K
Sbjct: 762 RAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804


>gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
 gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
          Length = 834

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/893 (40%), Positives = 548/893 (61%), Gaps = 85/893 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 10  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE ++
Sbjct: 70  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 130 SKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++G   ++++PDI  + LM+ I GPDFPTG V++G++GI+ AY TGRG+I++R    
Sbjct: 190 GEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAKVD 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ DE+DR G R+VI+++
Sbjct: 250 IEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVR 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E VV RRT++
Sbjct: 310 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM                 
Sbjct: 370 ELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYG------------- 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I +E   L   I +  DIL+ R 
Sbjct: 417 -------------LSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRE 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  EL+ ++      RRT +  G + ++EDED I  ED++V ++H GY+KR+P+ 
Sbjct: 464 RINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVD 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY  K + +P     A+
Sbjct: 524 EFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQ 583

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N  E+I+ ++     E++ ++ Y+ F TK G V+R  +++F  I  +G  
Sbjct: 584 GIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLK 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ VE  +++  +++ T  G  + F  S +R   GR++ GVRGI L   D 
Sbjct: 643 ALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GRSAAGVRGIRLRDEDY 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  A                                   L +DS V             
Sbjct: 702 VIGAA----------------------------------PLNSDSKV------------- 714

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L +SE GFGK+TS+ ++ I  R G G++  +V+  N  G LV +  VN ++ I+
Sbjct: 715 ------LVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--GPLVGLTTVNGDEDIM 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           LV+D+G +IR  +  +    R+  GV +       RV ++ ++ + E+ +E E
Sbjct: 767 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV-DKEVDEETE 818


>gi|220903292|ref|YP_002478604.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 855

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/885 (40%), Positives = 535/885 (60%), Gaps = 89/885 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++   +N+ + K ARI 
Sbjct: 9   ISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARIV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD PAA RYTE R+ + 
Sbjct: 69  GDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSRL 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L DL K+TVDFRPNYD + QEP V+ ++ PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 129 AQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGEL 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D    ++D+P   +D LME ++GPDFPT   +    G+ +AY TGRG++ +RG   IE 
Sbjct: 189 CDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGKGLYDAYHTGRGTVKVRGRMEIED 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                + IV+ EIPY +NK++++EKIA LV +++I  I DLRDESDR+G RVVI+LKRG 
Sbjct: 249 RKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKRGT 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++++N LY++T L+S F +NM+A+   +P+   L   L  FV  R EVV+RRT+Y L 
Sbjct: 309 IPEIVINALYKFTPLESSFGINMLAVVDNRPQLLNLKSALTCFVDHRREVVIRRTRYDLE 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL +A+ N+DEVV +IR S +P+ AR  LM+R                  
Sbjct: 369 KAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q +AILE+RL RLTGL R+++  E   L  +I+    IL +   L 
Sbjct: 411 --------FELSELQAKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVLR 462

Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           G +K+E+  +++   TPRRT ++ E L D++ ED I  ED+V+T+S  GY+KR  L  Y+
Sbjct: 463 GELKREIREIRETFATPRRTEVLREALTDIDIEDLIPDEDVVITLSRRGYMKRTGLENYQ 522

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P GS  A+G  
Sbjct: 523 QQKRGGKGIAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGVH 582

Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           + N+L L  GE +TT++    F ED+      Y +F TK G V+R+  S + +  ++G +
Sbjct: 583 INNLLPLEDGEWVTTVLALREFAEDK------YFLFVTKRGMVKRSSASLYARCRKTGLM 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     ++ I+L T  G  +RF    +R   GR + GV+GI+L + D 
Sbjct: 637 AVGLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDVRPM-GRVATGVKGIALRRQDF 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++  IV                          +T++ T                     
Sbjct: 696 VVAGVIV-------------------------KETDQTTE-------------------- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                I+++S  GFGKRTS   +R+ +R GKGI    V+   + G +V   PV D+D +I
Sbjct: 711 -----IMSISANGFGKRTSIELYRLQSRGGKGIINFKVT--GKTGPVVGAMPVRDDDSLI 763

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           L++    ++R+ ++E+R   RAT GV++    +   VV  +R+ E
Sbjct: 764 LLTSANKIVRIGLDEVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 808


>gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8]
 gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8]
          Length = 826

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/881 (41%), Positives = 545/881 (61%), Gaps = 94/881 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  + V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E    ++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-GGN 634

Query: 670 R--SGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++  +        +L+ + LG  ++FP+  +R   GR + GVRG
Sbjct: 635 RSYSGIRAIVLDKGDELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V+  D++                                       
Sbjct: 694 IKLNENDFVVG-AVVISDDSNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +IR   R   GV + +TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 800



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  +    + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
 gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
          Length = 865

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/895 (40%), Positives = 540/895 (60%), Gaps = 94/895 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCARI 
Sbjct: 13  VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+ MGKYHPHG+++IY+AL ++AQ+W+ R  L++G GNFGSVDGD  AA RYTE RL K 
Sbjct: 73  GDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL E 
Sbjct: 133 SMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192

Query: 199 VDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +   + +IDN      + D+D LM+I++GPDFPTGA ILGR GI +AY TGRG I +R +
Sbjct: 193 IYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRAI 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE  +  + +I+VTE+PY VNK+ +++ + +LV+ KRI  I D+RDES R+G RVVIE
Sbjct: 253 TEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVIE 312

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  +A+VILNQL+++T LQ  F   M+AL    P+   L  +L  ++  +E+VV RRT
Sbjct: 313 LRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNLKDMLTYYLKHQEDVVTRRT 372

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y LNKA +RAH+L G  IA+ N+DEV+ IIR S N   A+ +L++R             
Sbjct: 373 RYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------- 419

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AI+++RL  LTGL R+ I NE N L  +I E  +IL+ 
Sbjct: 420 -------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELKAKIAEYKEILAD 466

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++LLG+IK EL ++ D+    RRT I     D+ DE+ I RE++V++++ LGY+KR+P 
Sbjct: 467 ENKLLGVIKTELTAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMPK 526

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++ Q RGGKG  G+ + D D + ++F+ +TH  ++FF+++G VY+ K + +P     A
Sbjct: 527 DTFKVQNRGGKGIKGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNA 586

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG A++N+L L   E++T I+P     + ++  Y++ ATK+G V++ K+  F  I ++G 
Sbjct: 587 RGVAIVNLLQLLPNEKVTAIIPI----TGFDKKYLMMATKNGIVKKTKIEAFENIRKTGL 642

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L+  DE++ V+  + ENDI L T  G C+RF    +R   GR S+GVRGI   K D
Sbjct: 643 AAITLNDGDELIEVKATSGENDIFLVTTKGMCIRFNEDCVR-DTGRTSMGVRGIRCDKND 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI+M + +  D                                                
Sbjct: 702 EVIAMQLDVQGD------------------------------------------------ 713

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E   +T +  G  KRT   +F    R GKG++   +++  + G +V+   V ++  I
Sbjct: 714 ---EILFVTANGMG--KRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHDI 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRESEIVDE 905
           ++++++G +IR+  ++I +  R T GV + +      V SV    R  E E VDE
Sbjct: 767 MMMTNEGIMIRMHCSDITVIGRITSGVKLMNVGSGAFVASVAKLARTEEEENVDE 821


>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
 gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
          Length = 830

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/867 (41%), Positives = 527/867 (60%), Gaps = 57/867 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRLQ   +  LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG VA+I NP+I 
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KTSGDREQIVV 268
              LM+ + GPDFPTGA ILG + IK AY TGRGSI +RGV+ IE    +   +RE I++
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAIII 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+VIELKR +   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+A+LD ++ +IR +P+  TA+ EL+                  +SY         
Sbjct: 361 GLLIALAHLDSIINLIRNAPDAPTAKGELI------------------NSYG-------- 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSEVQ  AIL+++L RLT L  D IR E   L ++I +  DIL  R R+L II+ E   +
Sbjct: 395 LSEVQADAILQMQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K +  TPRRT I     +++D D I  E +++ ++  GY+KR+P+S + +Q R  +G++G
Sbjct: 455 KTQFTTPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAG 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++++D +        H SVLFFS  G VY  K +++P GS  +RG  ++ +L + + E
Sbjct: 515 AKVKEDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+I+   E  S     Y+V  TK GN+++  L  F  I  +G IA+ L+  D++  V 
Sbjct: 575 KITSIVSVSEFSSEE---YLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               E+ +++ ++ G  + F     ++   GR + GV+ + L  GD++I M I+    A 
Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRGVKSMKLKTGDELIGMDIL--PAAI 689

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +     M+    +    S + EE +++                       ++L ++  G
Sbjct: 690 LNTLNTEMEEELTEVEETSDNIEETSNILG--------------------PWVLIITIGG 729

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKR     FR+ NR+G+G+ AT          L  +  VN +++I++ +++G +IR  +
Sbjct: 730 YGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQSI 789

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894
           N I I SR   GV +    +D+ +  V
Sbjct: 790 NAISIQSRTATGVRVQKLDEDDAITGV 816


>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
 gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
 gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
          Length = 828

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/915 (40%), Positives = 561/915 (61%), Gaps = 100/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V+ NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  L++R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+++P  S  A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624

Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
           R  LS+F   NR  SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R 
Sbjct: 625 RTNLSEF-GGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVRE 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV GI L + D V+  A+V+  D++                            
Sbjct: 684 I-GRTTRGVMGIRLNENDFVVG-AVVISDDSNK--------------------------- 714

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L+VSE G GK+T +  +R  +R GKG+    +++ 
Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ- 749

Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + G LV+V  V+D N  +++++    +IRV + +IR   R   GV + +TA  ++VV V
Sbjct: 750 -KTGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYV 806

Query: 895 ERIRESEIVDEAEST 909
               + E  +  E++
Sbjct: 807 NSCPKEEEPENLETS 821


>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
 gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
          Length = 855

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/915 (41%), Positives = 548/915 (59%), Gaps = 130/915 (14%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I + D +    I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFNKDSD----IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DG
Sbjct: 58  LGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GI
Sbjct: 118 DGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E+VDG + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + IR  +HIEK S +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKIRAKTHIEKKS-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR+G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+
Sbjct: 297 SDREGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +  
Sbjct: 357 NHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659
           V+++P GS  A+GKA++N+++L   E+I  I+P   F E++S      + F TK+G V+R
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDENKS------LCFFTKNGIVKR 624

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSV----------------------ETCTQENDI- 696
             LS++  I   G  A+ LD  DE+++                        T + EN I 
Sbjct: 625 TNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIE 684

Query: 697 -------LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                     TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D    
Sbjct: 685 SIKGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND---- 739

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                          EQ IL++S KG G
Sbjct: 740 -----------------------------------------------EQEILSISAKGIG 752

Query: 810 KRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           KRT++ ++R+ +R GKG+   + TD +K      L++V  V+++  ++ ++  G +IRV 
Sbjct: 753 KRTNAGEYRLQSRGGKGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRVD 807

Query: 867 VNEIRIASRATKGVV 881
           +  IR A R T GV+
Sbjct: 808 MQSIRKAGRNTSGVI 822



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   DE+++++
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAI 601


>gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83]
 gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83]
          Length = 859

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/883 (39%), Positives = 539/883 (61%), Gaps = 87/883 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +   
Sbjct: 3   DREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  TRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN+
Sbjct: 123 TESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +V
Sbjct: 183 PPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+ + + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G R
Sbjct: 243 IRSRAEIEQHN-NHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EVV
Sbjct: 302 IVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R         
Sbjct: 362 TRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS++Q R+I+++RL  LTGL RD +R E   +   I     
Sbjct: 413 -----------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+K
Sbjct: 456 LLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P G
Sbjct: 516 RTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEG 575

Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           +  A+G+A+ N+L+++  +++     I     D+   N+ Y++F TK G +++  L  F 
Sbjct: 576 AKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+G
Sbjct: 636 RPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVKG 694

Query: 727 ISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++L     D+V+ M  + H +                                       
Sbjct: 695 MTLDDDGQDEVVGMISIKHPE--------------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV +
Sbjct: 716 ------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVDI 761

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
             V D + +++++  G  IRV V ++ I  RAT+GV +   +K
Sbjct: 762 RAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/881 (42%), Positives = 529/881 (60%), Gaps = 85/881 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+   K Y 
Sbjct: 5   EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF PNYD S +EP VL A++P +L NG  GIAVGMATNIP 
Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG + +ID PD  ++ LM +I+GPDFPT  +ILG  GI+ AY TGRG I +R 
Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             HIE TS  R +I+VTE+PYQVNKA ++EKIAELVR+K I  I  L DESDR G R+VI
Sbjct: 245 RVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +++R A+A+VILNQLY++T LQ  F V M+AL    P   TL  +L  ++  +++V+ RR
Sbjct: 305 DVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+      D K    
Sbjct: 365 TKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLME------DFK---- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+LRL RLTGL R+ I  E   +   I     +L+
Sbjct: 415 ----------------LSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++  IIK ELL+V+++    RRT I     ++  ED I +ED+V+T++H  Y+KR+P
Sbjct: 459 DEGKIDKIIKDELLAVREKYGDERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR Q+RGG G +G+  ++ DFV ++ + +TH ++LFF++ G VY  K + +   S Q
Sbjct: 519 LDTYRRQKRGGVGVTGMGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQ 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L L   E+IT ++   E        Y+  ATK G V++  LS+F  I R G
Sbjct: 579 AKGTAIINLLQLESEEKITAVIQVKE---FLPERYLFMATKKGIVKKTSLSEFQSIRRGG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  D+++ V+    E  ++L T  G  V F    +R   GR +   RG+   KG
Sbjct: 636 LNAINLDEDDDLIGVKFTDGEKHVILGTAGGMAVAFAEDDVRSM-GRTA---RGV---KG 688

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                                    +LK    V G  +  R  E
Sbjct: 689 ----------------------------------------INLKAGDVVVGMDNLARNAE 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LT++ +G+GKRT++ ++R+  R GKG+    V++  + GA++ +  V    +
Sbjct: 709 -------VLTITAEGYGKRTATSEYRLQTRGGKGLINMKVTE--KTGAVIGLKVVRPGQE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +IL++  G +IR  V+EI + SR T+GV +    + ++  S
Sbjct: 760 LILITTDGIVIRTKVDEISVISRNTQGVKVVRLGEGDKAAS 800


>gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis]
          Length = 859

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/883 (39%), Positives = 538/883 (60%), Gaps = 87/883 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +   
Sbjct: 3   DREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  TRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN+
Sbjct: 123 TESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +V
Sbjct: 183 PPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+ + + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G R
Sbjct: 243 IRSRAEIEQHN-NHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EVV
Sbjct: 302 IVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R         
Sbjct: 362 TRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS++Q R+I+++RL  LTGL RD +R E   +   I     
Sbjct: 413 -----------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+K
Sbjct: 456 LLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P G
Sbjct: 516 RTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEG 575

Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           +  A+G+A+ N+L+++  +++     I     D+   N+ Y++F TK G +++  L  F 
Sbjct: 576 AKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+G
Sbjct: 636 RPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVKG 694

Query: 727 ISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + L     D+V+ M  + H +                                       
Sbjct: 695 MRLDDDGQDEVVGMISIKHPE--------------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV +
Sbjct: 716 ------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVDI 761

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
             V D + +++++  G  IRV V ++ I  RAT+GV +   +K
Sbjct: 762 RAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804


>gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
 gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
          Length = 816

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/867 (43%), Positives = 529/867 (61%), Gaps = 94/867 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++GV     Y K ARI G+V+GKY
Sbjct: 17  KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE RL KA+  +L D
Sbjct: 77  HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L KDTVDF PNYD + +EP VL  R PN+LVNG  GIAVGMAT+IP H + E++D  + +
Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           I + D   + L+E ++GPDFPTG +I G+ GI++AY TGRG I +R   HIEKT   R+ 
Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIFGKQGIRDAYRTGRGRIKVRAKVHIEKTK-TRDV 255

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ E+P+QVNKA ++E+I+EL R+K I  IA++RDESDR G RVVIELKR A ++++LN
Sbjct: 256 IVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVLN 315

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY+ + +++ F + ++A+N  +P+ FTL  +L  F+  R+ VV+RRT + L KA+ RAH
Sbjct: 316 HLYKSSVMETTFGIILLAINNKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKARAH 375

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L GL IA+ ++DEV+ +IR S + E A+  LM+R                         
Sbjct: 376 ILEGLKIALDHIDEVIALIRSSQDVEIAKNALMER------------------------- 410

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSE+Q++AILE+RL RLTGL RD I  E  SL  EI+    IL S  +L  II  EL
Sbjct: 411 -FGLSELQSKAILEMRLQRLTGLERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNEL 469

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           L +K++  +PR T I E    ++ ED I  E +VVT+SH GYVKRV L VY  Q RGGKG
Sbjct: 470 LEIKEKFSSPRCTIIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKG 529

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           +      D+DF+   F+ +TH ++LF ++ G +Y  KV+++P     A GKA++N++ L+
Sbjct: 530 KISGNTHDDDFIQSFFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLS 589

Query: 626 QGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
             E+I    T   F +D+S      +VF TK+G V+R  LS++  I   G  A+ LD+ D
Sbjct: 590 SDEKIMATITTSDFHDDKS------LVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADD 643

Query: 683 EILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAI 740
           E+++    TQ+  ++ + T  G C+RF I+ +R   GR + GV  I   AK D VI    
Sbjct: 644 ELVTASIITQDVKELFVATYQGMCIRFDINDVREI-GRAARGVTAIRFKAKEDSVIGATT 702

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +                                               R +  KL     
Sbjct: 703 I-----------------------------------------------RSENDKL----- 710

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDK 859
           LTVSE+G GK+T +  +R+ +R GKG+    ++   + G LV++  VND N  +++++  
Sbjct: 711 LTVSEQGIGKQTLAGAYRLQSRGGKGVIVMKLTA--KTGKLVSIINVNDENMDLMVLTTS 768

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTA 886
           G +IRV    IR A R T GV I + A
Sbjct: 769 GKMIRVDTEAIREAGRNTSGVKIVNVA 795



 Score = 38.1 bits (87), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T+S +G+ KR     +   NR GKG  + +    + I +    F  N 
Sbjct: 493 VEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKGKISGNTHDDDFIQSF---FVANT 549

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D I+ +++KG L  + V +I  A R   G   V +   + DE++++
Sbjct: 550 HDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLSSDEKIMA 596


>gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1]
          Length = 874

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/901 (41%), Positives = 549/901 (60%), Gaps = 80/901 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I DEMQNS L YA++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K Y KCA
Sbjct: 9   VINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKAYRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              G V+G+YHPHG+A++YDAL R+AQD+S+R  L++G GNFGS+DGD PAA RYTE ++
Sbjct: 69  DTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ K+TVDF  NYD   +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 AKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D    +I++PD  L+ LME I+GPDFPTG +I+G+ GI+ AYATGRG I++R  +H
Sbjct: 189 GEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIMGKAGIRAAYATGRGKIILRSRTH 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G R  I++ EIP+ + K  +L+ I +LV++KRI  +  +RDESD+ G RVVIELK
Sbjct: 249 FEEIKG-RNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A  +++LN+L+  T LQ    + M+AL   +P+  TL  +L+ ++ F+ +V+ RRT+Y
Sbjct: 308 KDAMPEIVLNKLFALTQLQDTVGIIMLALVNGEPKILTLKQMLQHYLDFQVDVIQRRTRY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L G  +A   +DEV+ IIR S   + A+  +++R  +     D+  L+D
Sbjct: 368 DLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDV----DMSALLD 423

Query: 436 DSSYTIGS---DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            + Y +     +    LSE Q  AI+++RL +LTGL R  I +EL  L  +I +  DIL+
Sbjct: 424 RAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFEDILA 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
             +R+ GII  +L +++ +    RRT I  V G +D+  ED I  ED VVT+++ GY+KR
Sbjct: 484 DVNRVYGIIIDDLNTIRKKFSDDRRTSIENVSGEVDI--EDLIPEEDCVVTLTNNGYIKR 541

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL+ Y+ Q RGG+G +G+  R+EDFV ++FI  +H +VLF S+LG +YK K + +P GS
Sbjct: 542 MPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKCYEVPDGS 601

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +RG  LIN++ L++GE+I  ++    F ED+      Y+   TK G ++R+ LS +  
Sbjct: 602 KASRGFNLINLIPLSEGEKIAAMIKTTDFSEDK------YITIVTKKGKIKRSNLSLYKN 655

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + ++G IA+ LD  DEI  V        I + T+ G  +R   +  R  + R++ GVR I
Sbjct: 656 VRKNGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMS-RSAHGVRAI 714

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +GD V+S+A                       R+  G T                  
Sbjct: 715 KLREGDYVVSIA-----------------------RVREGAT------------------ 733

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTV+E G+GKRT    +RI NR G G+    V  +   G +  +  V
Sbjct: 734 ------------LLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVDDVR--GHVCGIKIV 779

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D IILVS  G +IR+  ++IR+  R  KGV +    +  +VV+  R   +E  D AE
Sbjct: 780 DEEDDIILVSSDGIIIRILASDIRVMGRIAKGVRVMRVNEGAQVVAFTR---AEHDDNAE 836

Query: 908 S 908
           +
Sbjct: 837 T 837



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 16/221 (7%)

Query: 536 EDMVVT-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           ED  +T V+  G +KR  LS+Y+  R+ G    G+   DE  +  + +   +  +   + 
Sbjct: 632 EDKYITIVTKKGKIKRSNLSLYKNVRKNGLIAIGLDEGDE--IAGVRMTDGNAQIFVATR 689

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + +  +   G   +R    +  + L +G+ + +I    E  +      ++  T++
Sbjct: 690 NGMAIRIEENK---GRSMSRSAHGVRAIKLREGDYVVSIARVREGAT------LLTVTEN 740

Query: 655 GNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R +L  +   NR G      K+D  R  +  ++   +E+DI+L +  G  +R   S
Sbjct: 741 GYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCGIKIVDEEDDIILVSSDGIIIRILAS 800

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            IRV  GR + GVR + + +G QV++     H D    E++
Sbjct: 801 DIRVM-GRIAKGVRVMRVNEGAQVVAFTRAEHDDNAETEKV 840


>gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
 gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
          Length = 834

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/883 (41%), Positives = 542/883 (61%), Gaps = 84/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 10  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE ++
Sbjct: 70  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++G   +++NPDI  + LM+ I GPDFPTG V++G++GI+ AY TGRG+I++R    
Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAKVD 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ DE+DR G R+VI+++
Sbjct: 250 IEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVR 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E VV RRT++
Sbjct: 310 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM                 
Sbjct: 370 ELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYG------------- 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I +E   L   I +  DIL+ R 
Sbjct: 417 -------------LSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRE 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  EL+ ++      RRT +  G + ++EDED I  ED++V ++H GY+KR+P+ 
Sbjct: 464 RINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVD 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY  K + +P     A+
Sbjct: 524 EFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQ 583

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N  E+I+ ++     E++ ++ Y+ F TK G V+R  +++F  I  +G  
Sbjct: 584 GIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLK 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ VE  +++  +++ T  G  + F  S +R   GR++ GVRGI L   D 
Sbjct: 643 ALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GRSAAGVRGIRLRDEDY 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  A                                   L +DS V             
Sbjct: 702 VIGAA----------------------------------PLNSDSKV------------- 714

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L +SE GFGK+TS+ ++ I  R G G++  +V+  N  G LV +  VN ++ I+
Sbjct: 715 ------LVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--GPLVGLTTVNGDEDIM 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LV+D+G +IR  +  +    R+  GV +       RV ++ ++
Sbjct: 767 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGARVATIAKV 809


>gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 848

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/723 (45%), Positives = 478/723 (66%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717


>gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818]
 gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 824

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/883 (40%), Positives = 537/883 (60%), Gaps = 93/883 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+K +  V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ +   + Y
Sbjct: 6   EDKSV-EVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 65  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+  A+  +L D+ KDTV+F PNYD +  EP VL +R PN+LVNG  GIAVGMAT+IP
Sbjct: 125 EARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  + VIDN   ++D ++E+++GPDFPTG +I G+ GI  AY TGRG I +R
Sbjct: 185 PHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIEKT   ++ IV+ E+PYQVNKA ++E+I+EL +EK I  IA++RDESDR+G RVV
Sbjct: 245 AKVHIEKTK-TKDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T+++S F + ++A+N  +P+ F L+ +L+ F+A R+ +++R
Sbjct: 304 IELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ + L KA+ RAH+L GL IA+ N+DE++RIIR S + E A+  L+++           
Sbjct: 364 RSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AILE+RL RLTGL RD I  E   L  +I     IL
Sbjct: 413 ---------------FSLSELQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  I+K ELL +K++  + R+T+I E    ++ ED I  E +VVT+SH GYVKRV
Sbjct: 458 KSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEKVVVTMSHRGYVKRV 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+   F+ +TH +++F ++ G +Y  KV+++P    
Sbjct: 518 LLKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGR 577

Query: 612 QARGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            A GKA++N+++L+  E+I    T   F +D+S      +VF TK+G V+R  L ++  I
Sbjct: 578 TAIGKAVVNLINLSPDEKIMATITTTDFNDDKS------LVFFTKNGIVKRTNLKEYSNI 631

Query: 669 NRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              G  A+ LD  DE+++     +   ++ + T+ G C+RF I  +R   GR   GV GI
Sbjct: 632 RSVGVRAINLDENDELVTAHIVGSSVKELFIATQQGMCIRFGIDELREI-GRVGRGVTGI 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                +  +  A  + +D D                                        
Sbjct: 691 KFKASEDCVIAATTITSDTDK--------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTVSE+G GK+T + ++R+ +R+GKG+    ++   + G LV+V  +
Sbjct: 712 ------------LLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTP--KTGKLVSVVNI 757

Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ND N  +++++  G +IRV    IR A R T GV I +   D+
Sbjct: 758 NDENMDLMVLTSSGKMIRVDTEAIREAGRNTSGVKIVNVGNDK 800



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 25/273 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I S       + I+  T 
Sbjct: 501 NEKVVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTN 560

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   AGR ++G   V  I+L+  +++  MA +   D + D+ + +    
Sbjct: 561 KGQLYWLKVYKIPE-AGRTAIGKAVVNLINLSPDEKI--MATITTTDFNDDKSLVFFTKN 617

Query: 759 SAQRRLISGDTEEITSL--------KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
              +R    +   I S+        +ND  V  +I     +EL     FI T  ++G   
Sbjct: 618 GIVKRTNLKEYSNIRSVGVRAINLDENDELVTAHIVGSSVKEL-----FIAT--QQGMCI 670

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R    + R   R G+G+      K +E   + A    +D D+++ VS++G   +    E 
Sbjct: 671 RFGIDELREIGRVGRGVTGIKF-KASEDCVIAATTITSDTDKLLTVSEQGIGKQTLAGEY 729

Query: 871 RIASRATKGVVIFS-TAKDERVVSVERIRESEI 902
           R+ SRA KGV++   T K  ++VSV  I +  +
Sbjct: 730 RLQSRAGKGVIVMKLTPKTGKLVSVVNINDENM 762



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 13/158 (8%)

Query: 746 ADYDERICYMKH-MSAQRRLISGDTEEITSLKNDSS------VEGNISEERCQELKLKEQ 798
           A+  E+I Y++  + ++ +L S   +E+  +K   S      +E +      ++L   E+
Sbjct: 444 AELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEK 503

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++T+S +G+ KR     +   NR GKG  + +    +E   + + F  N +D I+ V++
Sbjct: 504 VVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNT---HEDDFIESFFVANTHDTIMFVTN 560

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           KG L  + V +I  A R   G   V + + + DE++++
Sbjct: 561 KGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKIMA 598


>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 817

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/891 (42%), Positives = 528/891 (59%), Gaps = 87/891 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+    +  V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N
Sbjct: 2   DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG+ ++YDA  R+AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF PNYDGS QEP VL ++ PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEVVDGCV +ID PD  L+ +M  I+GPDFPTGA I+GR GI  AYATGRGS+
Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + +E  +  + +IVVTEIPYQVNKA ++E IAEL R + I  I  LRDESDR+G 
Sbjct: 242 KMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+   + D+ILN+LY++T LQ  F + M+AL    P   +L+ +L+ ++  + +V
Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L+KA  RAH+L GL IA+ ++DEV+R IR S   ETA+  LM          
Sbjct: 362 ITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMT--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL++RL RLTGL R+ I  E   L   I    
Sbjct: 413 -----------------AFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +++ I+K ELL  K      RRT++     ++  ED I  E MV+T++  GY+
Sbjct: 456 SVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYM 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP- 607
           KR+  +VY  Q +GG+G  G+  +DED V  L   S   +VLFF++ G VY+ K + +P 
Sbjct: 516 KRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPE 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G A INIL L+ GE++  ++   + + S N   +  AT++G V++ +L++F  
Sbjct: 576 ANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMN---LFMATENGLVKKTELAEFKN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G IA+ L   D +  V     +  I+L TKLG  + F  S +R   GRN+ GVRGI
Sbjct: 633 VRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPM-GRNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SLA GD+VI  A VL  D                                          
Sbjct: 692 SLAPGDRVIG-ADVLAPD------------------------------------------ 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             CQ        +LTVSE+GFGKR +   ++I  R GKG +   ++   + G +V V  V
Sbjct: 709 --CQ--------VLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITP--KTGVIVGVEVV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERI 897
            ++ +++L++  G +IR  +  I I   R T GV I     D++V +++ I
Sbjct: 757 REDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTI 807


>gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
 gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
          Length = 852

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/893 (39%), Positives = 542/893 (60%), Gaps = 91/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++G   +K + KCA
Sbjct: 9   IQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQDWS+R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L+ D+GK+TVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EVV+  V +IDN DI+     +D L+++++GPDFPTG +ILG +GIK AY TGRG I +
Sbjct: 189 REVVNAVVRLIDN-DIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTGRGKIRV 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     + +IVVTE+PY VNKA ++EKIAEL ++K+I  I DLRDE+ R+G R+
Sbjct: 248 RAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R  +  V+LN L+++T LQ  F V  +AL   +P+   L  +L  ++  +++VV 
Sbjct: 308 VVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIHQKDVVT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L+KA  RAH++ GL IA  N+DEV+ IIR S   + A+  LM+R          
Sbjct: 368 RRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMER---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q++AI+++RL  LTGL R+ +  E   L  +I +   I
Sbjct: 418 ----------------FGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+I++E++++ D+    R+T I     DM  ED I   + V+T++ +GY+KR
Sbjct: 462 LADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTKVGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ RGGKG  G+   ++D++ ++ + ++H  ++FF++ G VY+ K + +P  S
Sbjct: 522 MSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEAS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG A+IN++ L   E+IT ++P  E E   ++ Y+  AT++G V++  + D+  I +
Sbjct: 582 RTSRGTAIINLIPLQPDEKITAMIPIKEYE---DDKYLFMATRNGIVKKTPIKDYENIRK 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D+++ V+      DILL TK GQC+RF  + +R   GR ++GV G++LA
Sbjct: 639 NGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRS-TGRTTMGVIGMNLA 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D +I+M      +A                                            
Sbjct: 698 PNDVIIAMQTASMGEA-------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VS  G GKRT   +F   NR GKG++   +++  + G LV V  V ++
Sbjct: 714 ---------VLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITE--KSGNLVGVKSVEND 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+++L++ +G +IR+ V+++ +  R T GV + +  +   V S+ ++ E + +
Sbjct: 763 DELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVEDKTL 815


>gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519]
 gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium
           sticklandii]
          Length = 817

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/882 (40%), Positives = 535/882 (60%), Gaps = 85/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRILF M  +G+   K Y K A
Sbjct: 12  IVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLGLVPEKSYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G+V+GKYHPHG+ A+YDA+ ++AQD+S R  L+ G GNFGS+DGD  AA RYTE ++
Sbjct: 72  TVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDSAAAMRYTEAKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK    LL D+ K+TVDF  NYD   +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL
Sbjct: 132 QKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +IDN +  ++ +M+ I+GPDFPTGA I+G+  I++AY TGRG + +R  + 
Sbjct: 192 REVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIMGKGSIRDAYMTGRGKVTVRSKAD 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    + QI+VTEIPYQVNKA M+EKIA+LV++KRI  I DLRDES+R G R+VIE++
Sbjct: 252 IEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDESNRDGIRIVIEVR 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  + +++LN LY+++ LQ +FS+ M++L   +P+   +  +L  ++  ++ VV RRT+Y
Sbjct: 312 RDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGEPKVLNIRDMLVHYLNHQKNVVRRRTEY 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA+ N+D V++IIR S N   A+ +L +                
Sbjct: 372 DLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFG------------- 418

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q++AIL++RL RLTGL R  I  E   L   I     IL  +S
Sbjct: 419 -------------LSDIQSQAILDMRLQRLTGLERGKIEEEFAELMKNIAYYESILQDQS 465

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LLGIIK E+L ++++    RRT I E   ++   D I  E++ VT +H GY+KR+P+  
Sbjct: 466 ILLGIIKDEMLKIREKHGDKRRTEITEAADEINILDTIPDEEVTVTFTHYGYIKRIPMDT 525

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+AQRRGGKG + +  RD+DFV  L + + H+ +LF ++ G +Y+   + +P     A+G
Sbjct: 526 YKAQRRGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKG 585

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N++ L + E++T+ +    D  + N  Y+V  TK G +++ ++S+F +  R+G IA
Sbjct: 586 TNIVNLIPLEKNEKVTSFISI-RDVPAEN--YLVMCTKKGVIKKTQISEFRKSTRNGLIA 642

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE+++V+T   E D ++ TK G  + F    +R   GR ++GVR I LA  D+V
Sbjct: 643 ISLREDDELINVKTTDGEQDFIIVTKKGMAISFDEKQVRDM-GRAAMGVRAIRLAPDDEV 701

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++M +V     D ++++  +      +R                    N  + R Q    
Sbjct: 702 VAMELV-----DPNKQLLVISEKGYGKRT-------------------NTKDYRLQ---- 733

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                                     R GKG++   +S+  + G LV    V  +++I++
Sbjct: 734 -------------------------TRGGKGVKTYKISE--KTGILVGAKAVYKDEEIMI 766

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++  G+LIR+ VN+I I SR T GV +  T ++  VV++ RI
Sbjct: 767 INSDGSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALARI 808


>gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 839

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/915 (39%), Positives = 545/915 (59%), Gaps = 95/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EHI    +E       V +   M+N Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MDEHIFDKVQE-------VDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  DL KDTVDF PN+D + +EP VL +RYPN+L NG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +IDN      D  ++ +++I++GPDFPTG  I+G+ 
Sbjct: 174 GIAVGMATNIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTIIGKL 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGR  I +R V++IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DLRDESDR+G R+ IEL+R  + +++LNQLY++T LQ  F V M+AL   +P+   L 
Sbjct: 294 ITDLRDESDREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVDNQPKVLNLY 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRTK+ LNKA +RAH+L GL IA+ N+D V+ IIR S N + A+ 
Sbjct: 354 DMLKYYLLHQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                              LSE Q +AI+++RL  LTGL R  +  
Sbjct: 414 SLI--------------------------AEFALSEAQAQAIVDMRLRALTGLERSKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +IKE   IL+ +  LLG+IK E+  + D+    RRT I     D+  ED I  
Sbjct: 448 ELKELHEKIKEYKAILADKKLLLGVIKNEISEIADKYGDDRRTSIGYDEYDISMEDLIPD 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  V+  ++LGYVKR+    +++Q RGGKG  G+   D+D++ DLF+ ++H  + FF++ 
Sbjct: 508 EPCVIARTNLGYVKRMTPDNFKSQHRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  YK K + +P  S  +RG A+IN+L L  GE IT ++P   D +  +  Y+  ATK G
Sbjct: 568 GRAYKLKAYEIPEASRTSRGTAIINLLQLAPGETITAVVPVKID-TLQDTDYLFMATKKG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + +F  I ++G  A+ L   DE++ V+    + +IL+ T LGQC+RF  + +R 
Sbjct: 627 IVKKTPVKEFANIRKTGIQAINLREDDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRP 686

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+++GV G+SL   D+V+ + +                  S Q     GDT      
Sbjct: 687 -TGRSAMGVIGMSLMDEDEVVGVQV------------------STQ-----GDT------ 716

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L VSE G GKRT   ++ + +R GKG++   +++ 
Sbjct: 717 ------------------------MLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITE- 751

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V    V+D+ +++L++ +G +IR+  ++I    R T GV + +  +  +V ++ 
Sbjct: 752 -KTGNVVGAKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIA 810

Query: 896 RIRESEIVDEAESTE 910
           ++R+    ++ +  E
Sbjct: 811 KVRKQPADEDGKDAE 825


>gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 827

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/891 (40%), Positives = 550/891 (61%), Gaps = 71/891 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +  EWNK Y K
Sbjct: 6   KEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD++ RMAQ +SLR  LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH +L +L K+T+DF  NYDG+ + P +L  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A + NP I L  LM  I GPDFPT  +I G+ GIK AY TG+G I++R  
Sbjct: 186 NLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKIIVRSK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +IE      +E +++ E+PYQVNK+ ++EKIA LV+EK+I  I ++RDESD+ G R+VI
Sbjct: 246 YNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ++K+   + +ILNQLY  TSLQ+ F +NMVAL+  KP+   L  ILK F+  R++++ R+
Sbjct: 306 DIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKIIKRK 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L K+  + H+L G AIA+ N++ ++ +I+ S N   A+++L + +W          
Sbjct: 366 CLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKK-------- 417

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              +++ +  +    Y S  Q+ AIL ++L +LT L +  I  E N L  +  +   ILS
Sbjct: 418 ---ENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILS 474

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +++ L   I++EL  +K +    R+T+I+  + ++  ED IV+E +VVT+S+ GYVK  P
Sbjct: 475 NKNILEKKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQP 534

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S Y AQ+RGG+G+S    ++ED++T+L + ++H ++L FSS G +Y  KV++LP  S  
Sbjct: 535 ISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSRN 594

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK ++N+L L   ERITTI+P  + +SS N   +  AT  G V++  L  F +   SG
Sbjct: 595 ARGKPIVNLLPLTSKERITTILPISKYKSSIN---IFMATALGFVKKTSLIQFKKPRNSG 651

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D+++ V   T  N+I + T  G+ V+F    IR   GR + G+RG+ +   
Sbjct: 652 IIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKM-GRTASGIRGMKITNN 710

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+++S+                         L+    ++I                    
Sbjct: 711 DRLVSL-------------------------LVPNKKDDI-------------------- 725

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+T +  G  KRT+   F I +R+ KG+ +  V++ N  G ++    V  NDQ
Sbjct: 726 ------LIVTANGYG--KRTNINQFPIKSRATKGVLSIRVTQKN--GVVIGAIQVKQNDQ 775

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           I+++++ GTL+R  V+EI I  R T+GV++  T K E+VV ++++    I+
Sbjct: 776 IMIITNAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLSNKPII 826


>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 853

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/893 (40%), Positives = 540/893 (60%), Gaps = 95/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 9   VHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            E++   V +IDN      +  L+ +MEI++GPDFPTGA ILGR  I+ AY TGR  I +
Sbjct: 189 REIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATILGRRSIEEAYRTGRAKIKV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE  +  + +I+VTE+PY VNKA ++EKIA+LV+EK+I  I  + DES+R+G R+
Sbjct: 249 RAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L  ++  +EEVV 
Sbjct: 309 NIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQPKVLNLHQMLDEYLKHQEEVVR 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA+ ++DEV+RIIR S N   A+ +LM+R          
Sbjct: 369 RRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q++AI+++RL  LTGL R+ + NE   L  +I+E   I
Sbjct: 419 ----------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LL +IK+E+  + D+    RRT I     D+  ED I  ED V+ ++HLGY+KR
Sbjct: 463 LADVKKLLTVIKEEIQIIADKYGDDRRTAIGYD-DDVSMEDLIPDEDTVIAMTHLGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGGKG  G+   +ED++ DL + + H  ++FF++ G VY+ K + +P   
Sbjct: 522 MDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAG 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG A+IN+L L   E+IT I+P  E    +N + Y+  AT++G V++  + ++  + 
Sbjct: 582 RTARGTAIINLLQLQPDEKITAIIPMRE----YNEDKYLFMATRNGMVKKTPMVEYEHVR 637

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+      DI L T+ G C+RF  + +RV  GR S+GV G+  
Sbjct: 638 KNGLQAIVLREDDELIEVKATDNNQDIFLVTRKGMCIRFNETDVRV-TGRVSMGVIGMRF 696

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+VI M                                                   
Sbjct: 697 EEDDEVIGM--------------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +++ + + +L VSE G GKRT   +F   NR GKG+     ++  + G +V    VND
Sbjct: 706 --QMESQGESLLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTE--KTGNIVGAKLVND 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRES 900
             +I+L++ +G +IR+ V++I I  R T GV + +  +  D +V S+ ++RES
Sbjct: 762 GREIMLITTEGIVIRMSVDDISIIGRNTSGVKLMNIDQESDIKVASIAKVRES 814


>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
 gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
          Length = 852

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/896 (41%), Positives = 541/896 (60%), Gaps = 123/896 (13%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 14  IDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  AA RYTE R+   
Sbjct: 74  GDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTEARMTIL 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 134 AEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDG + ++DN +  L+ LM+ I+GPDFPT  +I G+ GI +AY TGRG I IR  +HIEK
Sbjct: 194 VDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIRAKTHIEK 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 254 RA-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVVIELKRDA 312

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT Y L 
Sbjct: 313 MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRRTIYELQ 372

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +                  
Sbjct: 373 KARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 415 --------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLE 466

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I++EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  
Sbjct: 467 DLIREELKEIRAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEK 526

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+GKA+
Sbjct: 527 QKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAV 586

Query: 619 INILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           +N+++L   E+I  I+P   F E +S      + F TK+G V+R  LS++  I   G  A
Sbjct: 587 VNLINLQAEEKIMAIIPTSDFAESKS------LCFFTKNGIVKRTNLSEYQNIRSVGVRA 640

Query: 676 MKLDSRDEILSV--------------------ETCTQEN-------DILLTTKLGQCVRF 708
           + LD  DE+++                     E  ++EN        +   TK G C++F
Sbjct: 641 INLDENDELVTAIIVERDLIELSQASQDENLSEEASEENLENVGGKMLFAVTKRGMCIKF 700

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P++ +R   GR S GV  I   + +  +  A+V+  D                       
Sbjct: 701 PLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND----------------------- 736

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI- 827
                                       EQ +L+VS KG GKRT++ ++R+ +R GKG+ 
Sbjct: 737 ----------------------------EQEVLSVSAKGIGKRTNAGEYRLQSRGGKGVI 768

Query: 828 --RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
             + TD +K      L++V  V+++  ++ ++  G +IRV ++ IR A R T GV+
Sbjct: 769 CMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGVI 819



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +DKG L  + V +I   SR  KG   V + +   +E+++++
Sbjct: 561 TDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601


>gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
 gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
          Length = 819

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/879 (40%), Positives = 538/879 (61%), Gaps = 86/879 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+ + RMAQD++ R  LI+G GNFGS+DGD  AA RYTE R+ K   
Sbjct: 69  VLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEARMAKITS 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE++D
Sbjct: 129 ELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPHNLGELLD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+I+N +I  + LME + GPDFPTG +I G  GI  AY TGRG + +RG   IE+  
Sbjct: 189 GVLALIENKEITPEELMEYVTGPDFPTGGIIDGTKGIYEAYTTGRGRVRVRGKVDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGAS 319
             +  I++TEIP+QVNKA ++EKIAELV+EK+I  I DLRDES  R+G R+V+ELKR   
Sbjct: 249 NGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVVELKRDEE 308

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +++LN++Y+YT LQ+ F + ++AL    P+   L  IL  ++  R +V+ RRTKY L K
Sbjct: 309 PEIVLNKIYKYTELQNTFGIILLALVDNMPKVLNLKEILSHYINHRFDVITRRTKYDLEK 368

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           + +RAH+L G  +A+ N+D ++ IIR S +  TAR  L+++                  Y
Sbjct: 369 SENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEK------------------Y 410

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
           +         S++Q R+IL+++L RLTGL R+ + NE  +L   IKE  DILS+  R+  
Sbjct: 411 S--------FSDIQARSILDMKLQRLTGLEREKVENEYTALMEHIKELKDILSNDQRVYD 462

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           IIK++   +K++    RRT+I E  LD+  ED I  E ++VT+++ GYVKR+ L  Y+AQ
Sbjct: 463 IIKEDCEELKEKYSDERRTQIEEERLDINIEDLIKDEKVIVTLTNKGYVKRMNLDKYKAQ 522

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG S     + DF+ +++  S   +++ F+  G VY  KV+ +P  S Q+RGK + 
Sbjct: 523 KRGGKGVSTQNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQSRGKLIA 582

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+++L + E++ +I+   E   + +   ++F TK G V++  LS+F  +NRSG  A+KL 
Sbjct: 583 NLINLQENEKVKSIIKTREFSDTQD---LLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLK 639

Query: 680 SRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
             D+++ V      ND + + TK G  ++FP    R   GR ++GVRGI+L K D V+S 
Sbjct: 640 DGDDLIFVGLVESPNDQVFIATKNGYSIKFPHENARNM-GRATIGVRGINLRKDDDVVSA 698

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I+   D                                                     
Sbjct: 699 VIIKRDDTT--------------------------------------------------- 707

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILTV+E G+GKRT   ++ + +RSGKG+   ++    + G +V V  V + ++++ ++ 
Sbjct: 708 -ILTVTENGYGKRTREDEYPLQSRSGKGV--INLRCNEKTGVVVEVTSVTEEEELMAITS 764

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +IR P + I +  RAT+GV I    +DE++VS+ ++
Sbjct: 765 NGIVIRTPADTISLIGRATQGVRIMRVEEDEKLVSIVKV 803


>gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464]
          Length = 826

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/880 (41%), Positives = 547/880 (62%), Gaps = 93/880 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+ KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-DSN 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GVRGI 
Sbjct: 635 YNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREI-GRTTRGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+V+  D++                                         
Sbjct: 694 LNENDFVVG-AVVISDDSNK---------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  V+
Sbjct: 713 -----------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVISVD 759

Query: 849 D-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 DENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 799



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L R+ V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4]
          Length = 840

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/900 (40%), Positives = 545/900 (60%), Gaps = 95/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++    +K + K A
Sbjct: 9   IHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS+R +L++G GNFGS+DGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNGG GIAVGMATNIP HNL
Sbjct: 129 SKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +IDN         ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE     +  I+VTE+PY VNKA ++EKIAELV+ K+I  I  + DES+R+G R+
Sbjct: 249 RAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREGIRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+V+LNQL ++T LQ  F V M+AL   +P+   ++ +L+ ++  +++VV 
Sbjct: 309 NIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALVNNEPKVLNILQMLEYYLDHQKDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL  A+ ++DEV+RIIR S N   A+R LM+R          
Sbjct: 369 RRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMER---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q +AI+++RL  LTGL R+ + NE   L  +I E   I
Sbjct: 419 ----------------FELTDPQAQAIVDMRLRALTGLEREKLENEYKELEAKIAELRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549
           L+  ++LLG+IK+E+L + ++    RRT+I  G   DM  ED I  +D V+ +++LGY+K
Sbjct: 463 LADENKLLGVIKKEILVISEKYGDDRRTKI--GFEDDMSVEDLISDDDTVIAMTNLGYIK 520

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ +  +++Q RGGKG  G+   DEDF+ DL + + H  ++FF++ G  Y+ K + +P  
Sbjct: 521 RMSVDNFKSQNRGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPEA 580

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG A++N+L L  GE++T  +P  E +   ++ Y+  ATK G V++ ++ ++  + 
Sbjct: 581 GRTARGTAIVNLLQLQPGEKVTAAIPMREID---DDKYLFMATKGGMVKKTRMCEYSNMR 637

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+      DI L TK G  +RF  +  R+  GR S GV G+ L
Sbjct: 638 KTGLQAILLREGDELIEVKVTDNTEDIFLATKFGMSIRFKETDARI-TGRVSYGVIGMKL 696

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+VI M                   M++Q                            
Sbjct: 697 DEGDEVIGM------------------QMASQG--------------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   +++L  SEKG+GKRT   +F++  R GKG+   +V++  + G LV +  ++D
Sbjct: 712 --------EYMLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTE--KTGNLVGMKLLDD 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVDEAE 907
              I+L++++G LIR+ V++I I  R T GV + S   D   RV S+ ++RES   DE +
Sbjct: 762 GRDIMLITNEGILIRMGVDDISIIGRNTSGVKLMSIDADSDVRVASIAKVRESSRQDEED 821


>gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
          Length = 850

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/900 (40%), Positives = 542/900 (60%), Gaps = 63/900 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A + LL D+  +TVDF  N+DGS QEPVVL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG VA+I NPD+    L   I GPDFPTG  ILGR GI+ AY TGRGSI +RGV+
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DR+ I++TE+PYQ NKAA++EKIA+LV +++I  I+D+RDESDR G RV
Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQS F  NM+AL   +P   TL   L+ F+ FR EV+ 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + +  +A+  L+Q           
Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQ----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ  AIL+++L RLT L  + I+ E   L  +I +  DI
Sbjct: 417 ---------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ + R+  II++EL  +K    TPRR+ I +   ++ + D I  E  ++ V+  GY+KR
Sbjct: 462 LAKKERIDSIIEEELQQIKTIHATPRRSHIEQREGEIAETDLIANEQALILVTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ + +Q R  +G++G  M+++D +        H SVLFF+  G VY    + +P GS
Sbjct: 522 MPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + +GE+IT+++     E S +N Y++  T+ G +++  L+ F  I  
Sbjct: 582 RTARGVPIVQLLEIPKGEKITSVVAV--SEFSEDN-YLIMLTQKGFIKKTALAAFSNIRS 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D++  V    +E+ +++ ++ G  + F   + ++ + GR + GV+ + L
Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD++ISM I+         +I      S Q        E    + N+           
Sbjct: 699 RSGDELISMDIL-------PSQIVAQIAESNQEETEDESEEINPEVANNGP--------- 742

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    ++L ++  G GKR      R+ NR+G G+R     K N+   L A+  VN 
Sbjct: 743 ---------WVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKND--KLAALHVVNP 791

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           N++ ++++++G +IR  V+ I   SR+  G+ +    +D+ + +V  +  S+  +E+E +
Sbjct: 792 NEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSD-AEESEDS 850


>gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449]
 gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449]
          Length = 824

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/898 (40%), Positives = 536/898 (59%), Gaps = 95/898 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ +   + Y K ARI 
Sbjct: 12  VKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPRRPYKKSARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R+  A
Sbjct: 72  GDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTEARMTSA 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  +L D+ KDTV+F PNYD +  EP VL  R+PN+LVNG  GIAVGMAT+IP H + E+
Sbjct: 132 SEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMATSIPPHRIDEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  + VID    D++ L++I++GPDFPTG +I G+ GI  AY TGRG I +R   HIEK
Sbjct: 192 IDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIYGKAGILEAYRTGRGRIRVRAKVHIEK 251

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           T   ++ IV+ E+PYQVNKA ++E+I+EL +EK I  I+++RDESDR+G RVVIELKR A
Sbjct: 252 TKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREGIRVVIELKRDA 310

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F + ++A+N  +P+ F L+ +L+ F+A R+ +++RR+ + L 
Sbjct: 311 MSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRRSIFELE 370

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+ RAH+L GL IA+ N+DEV++ IR S + + A+  L+ +                  
Sbjct: 371 KAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSK------------------ 412

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q +AILE+RL RLTGL RD I  E   L  +I     IL S  +L 
Sbjct: 413 --------FKLSELQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILKSEDKLK 464

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+ELL +K++  T RRT+I E    ++ ED I  E +VVT+SH GYVKRV L  Y  
Sbjct: 465 SIVKEELLEIKEKFSTKRRTQIEEDYDAIDVEDLIPNEKVVVTMSHRGYVKRVLLKTYEK 524

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGGKG+      D+DF+   F+ +TH +++F ++ G +Y  KV+++P     A GKA+
Sbjct: 525 QNRGGKGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAV 584

Query: 619 INILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           +N+++L   E+I    T   F ED+S      +VF TK+G V+R  L ++  I   G  A
Sbjct: 585 VNLINLQADEKIMATITTTDFNEDKS------LVFFTKNGVVKRTNLKEYGNIRSIGVRA 638

Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           + LD  DE+++         ++ + T  G C+RF +  +R   GR S GV GI     + 
Sbjct: 639 INLDENDELVTAHIVDSHIKELFIATYQGMCIRFGVEELREI-GRVSRGVTGIKFKASED 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            +  A  +  D D                                               
Sbjct: 698 CVIAATTIANDTDK---------------------------------------------- 711

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQI 853
                +LTVSE+G GK+T + ++R+ +R+GKG+    ++     G LV+V  +ND N  +
Sbjct: 712 -----LLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTP--RTGKLVSVVNINDENMDL 764

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV---VSVERIRESEIVDEAES 908
           ++++  G +IRV    IR A R T GV I +   D+     V  +  +E +I DE  S
Sbjct: 765 MVLTSSGKMIRVDTEAIRKAGRNTSGVKIVNVGDDKVAYANVCPKEPKEEDINDEEGS 822


>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
 gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
          Length = 827

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/879 (41%), Positives = 541/879 (61%), Gaps = 91/879 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLT L RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTCLERDKIKEEYQNLLELIADLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL +K++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKIELLEIKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F    
Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGSNR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV GI 
Sbjct: 636 SCGVRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+V+  D +                                         
Sbjct: 695 LNENDFVVG-AVVISDDGNK---------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+
Sbjct: 714 -----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVD 760

Query: 849 D-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           D N  +++++    +IRV + +IR   R   GV + +TA
Sbjct: 761 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  +    + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601


>gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
 gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
          Length = 858

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/912 (40%), Positives = 548/912 (60%), Gaps = 122/912 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I + D +    I ++ I   +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFTKDSD----IENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   ++GQGNFGS+DG
Sbjct: 58  LGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GI
Sbjct: 118 DGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKRA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR+G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +LK F+
Sbjct: 297 SDREGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLKLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+  
Sbjct: 357 NHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q+ AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQSNAILDMKLGRLTGLEREKIDNELKELLA 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI+   +IL S + L  +IK EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIERLDEILKSEALLENLIKDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+ + F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS-VETCTQEND------------------------- 695
           LS++  I   G  A+ LD  DE+++ +     EN+                         
Sbjct: 627 LSEYQNIRSVGVKAINLDENDELVTAIIVARDENEMSNQALEDEENLENEVLENNEELEN 686

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                 +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  DA   
Sbjct: 687 VAVGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDA--- 742

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                           Q IL+VS KG G
Sbjct: 743 ------------------------------------------------QEILSVSAKGIG 754

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT + ++R+ +R GKG+    ++   +   L++V  V+++  ++ ++  G +IRV +  
Sbjct: 755 KRTDAGEYRLQSRGGKGVICMKLNA--KTKDLISVVIVDESMDLMALTTSGKMIRVDMQS 812

Query: 870 IRIASRATKGVV 881
           IR A R T GV+
Sbjct: 813 IRKAGRNTSGVI 824


>gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 937

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/732 (45%), Positives = 488/732 (66%), Gaps = 21/732 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++  ++NK Y K A
Sbjct: 6   VSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ R+AQ +S+R +LI+GQGNFGSVD DP AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK  H +L DL KDTVD+ PNYDGS Q P V+ AR PN+LVNG  GIAVGMATN+  HNL
Sbjct: 126 QKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMAPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C+A  D+P I  + LM+ I GPDFPTG +I GR+GI +AY TG+G + +RG  H
Sbjct: 186 TEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIYGRSGIVDAYRTGKGRLHLRGKYH 245

Query: 256 IEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           IE  S      +RE+IV TEIPYQ NKA ++EKIAELVR+K++  I+++RDESD+ G R+
Sbjct: 246 IEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKDGMRI 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EVV 
Sbjct: 306 AIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQPKIMTLRDLIAAFVRHRQEVVT 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ R H+L GL IA+AN+D ++  I+ S N + AR  L+  +W +  +  +
Sbjct: 366 RRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGGVIAM 425

Query: 431 I----------DLID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475
           +          D+I+     + Y +  D   Y LS  Q  AIL+++L RLTGL +D ++ 
Sbjct: 426 LEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQDKLQQ 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +   I +   IL +  +L+ +IK EL+ ++++    R+T+IV+   D    D I  
Sbjct: 486 EFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDFSRADLISE 545

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +V+TVS  GY K  P+S Y AQ+RGGKG+S   M+ +D +  + + STH +V+ F+  
Sbjct: 546 QTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMVVTSTHNNVMIFTDR 605

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+  +V+ +PI S  +RG+ ++N+++L+  E++T I+P  ED    +N YV FAT  G
Sbjct: 606 GRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDAKQNDNSYVFFATASG 665

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R +LS F  +  +G  A++L+  D ++ V     + DI+L +  G+ +RF  S IR 
Sbjct: 666 MVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFSNEGKAIRFNESKIRA 725

Query: 716 FAGRNSVGVRGI 727
             GR + GVRG+
Sbjct: 726 M-GRTAKGVRGM 736


>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
 gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/882 (41%), Positives = 534/882 (60%), Gaps = 89/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSIT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM  MG   N+ Y K A
Sbjct: 6   VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK HPHG++A+YDALARMAQ WS+R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ KDTVDFR N+DGS++EPVVL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ D    +ID+P+  ++ LMEII GPDFPT  +ILG  GI  AY+TGRG I +R  +H
Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+       IVVTE+PYQVNKA + E+IAELV++++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILLK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F +NM+AL  +G +P   TL  +L+ ++  R+EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR+RAH+L GL IA+ NLD V++ IR S   E+AR  LM+              
Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMR-------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q +AILEL+L RL  L R  I  E   +   I E  DIL++
Sbjct: 412 ------------NFSLTERQAQAILELQLRRLAALERQKIEEEYREVIKLIAELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IK++L  +K++   PRRTRI+  +  ++ DED I    +++T++  GY+KR  
Sbjct: 460 PRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR QRRGG+G  G++ R++D V  L   ++  ++LFF+  G VY+ K   +P  S  
Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE++T+++   E    ++  Y+V AT  G ++R +L ++ Q+  +G
Sbjct: 580 AKGLPLVNLVSLEPGEQVTSMLAVRE----FDAEYLVMATVRGKIKRTQLREYSQVRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D +  V       DILLTT  GQ +RF  S +R   GR + GV GI+LA+G
Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLAEG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM                                             +++EE    
Sbjct: 695 DRVVSM---------------------------------------------DLAEEGAD- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L V+ +G GKRT+  ++ +  R+  G+    +   NE   + A   V ++  
Sbjct: 709 -------LLVVTARGIGKRTALSEYPLKGRATGGV--ITIKLRNETDEVAAAAVVREHSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  ++  G ++R   +EI    RAT+GV + + A  +RV ++
Sbjct: 760 LTFITTGGMVMRTSASEISRLGRATQGVTVVNVASGDRVAAL 801



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V G +S+E   +L    + ++T++++G+ KR     +R   R G+GI+     + + +  
Sbjct: 490 VTGEVSDE---DLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRH 546

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L+     N  D ++  +D+G + ++  +E+  +SR  KG   V + S    E+V S+  +
Sbjct: 547 LLTC---NSLDNLLFFTDRGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQVTSMLAV 603

Query: 898 RE 899
           RE
Sbjct: 604 RE 605


>gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
 gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
          Length = 852

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/896 (41%), Positives = 541/896 (60%), Gaps = 123/896 (13%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 14  IDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  AA RYTE R+   
Sbjct: 74  GDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTEARMTIL 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 134 AEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDG + ++DN +  L+ +M+ I+GPDFPT  +I G+ GI +AY TGRG I IR  +HIEK
Sbjct: 194 VDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIRAKTHIEK 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 254 RA-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVVIELKRDA 312

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT Y L 
Sbjct: 313 MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRRTIYELQ 372

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +                  
Sbjct: 373 KARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 415 --------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLE 466

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I++EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  
Sbjct: 467 DLIREELKEIKAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEK 526

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+GKA+
Sbjct: 527 QKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAV 586

Query: 619 INILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           +N+++L   E+I  I+P   F E +S      + F TK+G V+R  LS++  I   G  A
Sbjct: 587 VNLINLQAEEKIMAIIPTSDFAESKS------LCFFTKNGIVKRTNLSEYQNIRSVGVRA 640

Query: 676 MKLDSRDEILSV--------------------ETCTQEN-------DILLTTKLGQCVRF 708
           + LD  DE+++                     E  ++EN        +   TK G C++F
Sbjct: 641 INLDENDELVTAIIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFAVTKRGMCIKF 700

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P++ +R   GR S GV  I   + +  +  A+V+  D                       
Sbjct: 701 PLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND----------------------- 736

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI- 827
                                       EQ +L+VS KG GKRT++ ++R+ +R GKG+ 
Sbjct: 737 ----------------------------EQEVLSVSVKGIGKRTNAGEYRLQSRGGKGVI 768

Query: 828 --RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
             + TD +K      L++V  V+++  ++ ++  G +IRV ++ IR A R T GV+
Sbjct: 769 CMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGVI 819



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +DKG L  + V +I   SR  KG   V + +   +E+++++
Sbjct: 561 TDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601


>gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
 gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
          Length = 809

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/887 (41%), Positives = 533/887 (60%), Gaps = 100/887 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K ARI 
Sbjct: 9   INIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DP AA RYTE RL + 
Sbjct: 69  GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEARLAQI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 129 AEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
                 +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +HI +
Sbjct: 189 CQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R+ I VTEIPYQVNKA ++ KIAELV+E+++  I+DLRDESDRQG RVVIELKR A
Sbjct: 249 VE-TRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVVIELKRDA 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR+++ L 
Sbjct: 308 EPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFELK 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            A+DRAH+L GL  A+  +D ++ IIR S N + AR             K+LI   D   
Sbjct: 368 AAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAAR-------------KNLIAEFD--- 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      S VQ +AIL+L+L RL  L R  I +E   L   I    D+LS   ++ 
Sbjct: 412 ----------FSVVQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIY 461

Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            ++K++   +K     PR T I  +G+++   ED +   D++VT+S  G++KRVP +V+R
Sbjct: 462 ALVKEDAKDLKSSYGQPRATEISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFR 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGK 616
            Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P  S + A+G 
Sbjct: 522 LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGT 581

Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           A++N++ + Q ERIT I+    FP D       +++ AT  G +++  L +F  +  SG 
Sbjct: 582 AIVNLIPVTQDERITAILDLKSFPADH------FLLMATNKGEIKKTSLQEFTAVRSSGL 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAM L + DE+++     +E DILL T+LGQ +RFP+S +R  + R S GV+ I L+  D
Sbjct: 636 IAMDLTASDELVAAVETIEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSMED 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM                                       D + EG +        
Sbjct: 695 EVVSM---------------------------------------DVAQEGTM-------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++TV+E G GK T+  ++   +R+G G+   +   +++ G +VA   V+  DQ+
Sbjct: 708 ------VITVTENGAGKLTAIEEYPQQHRAGSGV--INFKVVDKTGEVVASKVVSVTDQM 759

Query: 854 ILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSV 894
           +L+S  G + R  V E      I I  RAT+GV +    + +RVV+V
Sbjct: 760 MLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           + F+L  + KG  K+TS  +F     SG  + A D++  +E   LVA     +   I+L 
Sbjct: 607 DHFLLMATNKGEIKKTSLQEFTAVRSSG--LIAMDLTASDE---LVAAVETIEEKDILLA 661

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  G  IR PV+E+R + RA+ GV     + ++ VVS++  +E  +V
Sbjct: 662 TRLGQSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMDVAQEGTMV 708


>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 826

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/905 (41%), Positives = 543/905 (60%), Gaps = 106/905 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I +EM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M + G+   KKY KCA
Sbjct: 4   VLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+ A+YDAL R+AQD+++R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 64  GVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TV F PN+D + QEP+VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 124 TKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+VD  + +++NP I ++ L+E ++GPDFPTG  I G  GI++ Y TGRG I IR    
Sbjct: 184 NEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIYGIEGIRDLYLTGRGLIRIRAKVK 243

Query: 256 IEK-TSGD-----------------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           IE+ T G                  +E+I++TEIPYQVNKA ++EKIAELVREK+I  I 
Sbjct: 244 IERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEGIT 303

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++RDES+R+G RVV+ELK+G   +V+LN LY++T +++ F   ++A+   +P    L   
Sbjct: 304 EIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQPRILNLKEA 363

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+  R++VV++RT + L KA  +AH+L+GL IAV NLDEV+ IIR S NPE A+ +L
Sbjct: 364 LWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAKMKL 423

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R                            L+E+Q +AIL++RL RLTGL R+ I  + 
Sbjct: 424 MNR--------------------------FPLTEIQAQAILDMRLQRLTGLEREKIIQDY 457

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            ++  EI+    IL S   +  IIK EL+ +K +    R+T IV    ++  ED I +ED
Sbjct: 458 ETILKEIERLKAILESEELVRNIIKDELIEIKQKYGDERKTEIVTETKEINIEDLITQED 517

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MV+T++HLGY+KR  LS YR+Q+RGGKG + +    +D++  + I STH  ++FFS+ G 
Sbjct: 518 MVITLTHLGYIKRTSLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGR 577

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  KV+++P     ++GKA++N+L L +GE+ITT +   + E      Y++  TK G V
Sbjct: 578 VYCLKVYQIPEAGRVSKGKAIVNLLPLQEGEKITTALVCKDIEEG----YLMMFTKKGFV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L +F  I + G IA+ L+  DE++SV   T  N +++ TK+G  VRF    +R   
Sbjct: 634 KKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPM- 692

Query: 718 GRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR + GV GI  ++  D+V+S  +V                  ++   +   TE+    K
Sbjct: 693 GRTARGVIGIRFSEPEDEVVSADVV------------------SEGSFVLTITEKGIGKK 734

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   I E R Q              +G    T   + ++S ++G  + +  V + +
Sbjct: 735 TP------IEEYRLQ-------------HRG---GTGVKNIKLSLKTGNVVSSLQVKEDD 772

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           EI              II  S K  +IR+ V++IR   RAT GV +   + D+ VVS+ R
Sbjct: 773 EI--------------IICSSSK--MIRLKVSQIRPQGRATTGVRLIDLSADDTVVSMGR 816

Query: 897 IRESE 901
           I E E
Sbjct: 817 ILEGE 821



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 10/116 (8%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C++++  E +++  ++KGF K+TS  +F+  N   KG+ A D+ + +E   L++V     
Sbjct: 616 CKDIE--EGYLMMFTKKGFVKKTSLEEFK--NIRQKGVIAIDLEEGDE---LISVRKTTG 668

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV--VIFSTAKDERVVSVERIRESEIV 903
           N+Q+I+ +  G  +R    ++R   R  +GV  + FS  +DE VVS + + E   V
Sbjct: 669 NNQLIIATKMGMAVRFSEIDVRPMGRTARGVIGIRFSEPEDE-VVSADVVSEGSFV 723


>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 850

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/901 (40%), Positives = 544/901 (60%), Gaps = 66/901 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A + LL D+  +TVDF  N+DGS QEPVVL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG VA+I NPD+    L   I GPDFPTG  ILGR GI+ AY TGRGSI +RGV+
Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DR+ I++TE+PYQ NKAA++EKIA+LV +++I  I+D+RDESDR G RV
Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQS F  NM+AL   +P   TL   L+ F+ FR EV+ 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + +  +A+  L+Q           
Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQ----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ  AIL+++L RLT L  + I+ E   L  +I +  DI
Sbjct: 417 ---------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ + R+  II++EL  +K    TPRRT I +   ++ + D I  E  ++ V+  GY+KR
Sbjct: 462 LAKKERIDSIIEEELQQIKTIHATPRRTHIEQREGEIAETDLIANEQALILVTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ + +Q R  +G++G  M+++D +        H SVLFF+  G VY    + +P GS
Sbjct: 522 MPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + +GE+IT+++     E S +N Y++  T+ G +++  L+ F  I  
Sbjct: 582 RTARGVPIVQLLEIPKGEKITSVVAV--SEFSEDN-YLIMLTQKGFIKKTALAAFSNIRS 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D++  V    +E+ +++ ++ G  + F   + ++ + GR + GV+ + L
Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD++ISM I+                + AQ    + +  E  S + +  V  N     
Sbjct: 699 RSGDELISMDIL-------------PSQIVAQIAESNEEETEDESEEINPEVANN----- 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    ++L ++  G GKR      R+ NR+G G+R     K N+   L A+  VN 
Sbjct: 741 -------GPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKND--KLAALHVVNP 791

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++ ++++++G +IR  V+ I   SR+  G+ +    +D+ + +V  +  S    +AE +
Sbjct: 792 HEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPS----DAEES 847

Query: 910 E 910
           E
Sbjct: 848 E 848


>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6]
 gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6]
          Length = 797

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/879 (40%), Positives = 529/879 (60%), Gaps = 88/879 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+IT+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  ++ Y K AR+ 
Sbjct: 6   VNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSARVV 65

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+AAIY+ + RMAQ +S+R  LI+GQGNFGS+DGDP AA RYTE RL K 
Sbjct: 66  GDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLSKI 125

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF PNYDGS +EP VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 126 AEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLNEL 185

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               + +IDNP   +  LM  + GPDFPTG  I+GR GI++AY TG+GSI+++  S IE+
Sbjct: 186 AGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIVGRAGIESAYLTGKGSIIMQAKSEIEE 245

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                 +I+ +E+PYQVNKA ++E +AE+V+  R+  I+DLRDESD++G R+V+++K G 
Sbjct: 246 -GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKTGF 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+++T+LQ+ + +N + L    P   +L   L+ ++ +R  VV RRT++ L+
Sbjct: 305 NANVVLNQLHKHTALQTSYGINNMVLVDGMPRILSLKETLEQYIYYRSIVVERRTRFELD 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            A  RAH+L GL IA+ N+DEV+RII+ +P P  AR  L++                   
Sbjct: 365 AAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIE------------------- 405

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLTGL ++ I +E   L   I     ILSS   +L
Sbjct: 406 -------AFLLSEEQAKAILDMRLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLEIL 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK EL  +  +    RRT+I+E   ++ +ED I  E++ VT++  GY+KR P++ YR 
Sbjct: 459 SIIKDELTELISKYGDERRTQIIEADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRM 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGG+G  G   + E+FVTD+   ST   +LFF+  G  +  KV+ +P     ARGK++
Sbjct: 519 QRRGGRGVIGAETKTEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGKSI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L L   ERI   +P      S+   Y+V  T+ GN+ +  L  F    + G  A+ L
Sbjct: 579 VNLLQLEPDERIAGAIPV----KSFQAGYIVLVTRSGNIVKMPLQAFSNPRKGGIKAVNL 634

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++S +    E ++L+ TK G+ +RF    +R  + R ++GV+ ISL  GD++ISM
Sbjct: 635 KG-DSLVSAKLTNGEKELLVATKFGKAIRFKEGDVRA-SNRGTMGVKAISLNMGDELISM 692

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++                        SG T                             
Sbjct: 693 DVIEPG---------------------SGST----------------------------- 702

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LTV+ +G+GKRT   ++    R GKG++  D  K    G +     V++ D++++ + 
Sbjct: 703 -LLTVTNQGYGKRTELEEYPQQRRGGKGVKNIDARK----GYVCCTTTVSEEDELLVTTR 757

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +IR+P ++IR+  R+T+GV I +    + V ++ RI
Sbjct: 758 DGVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARI 796


>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 874

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/898 (39%), Positives = 539/898 (60%), Gaps = 101/898 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I DEM+N Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ +  +K+Y K A
Sbjct: 9   IIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+A+IYDA+ R+AQ+++ R  L++G GNFG+VDGD  AA RYTE R+
Sbjct: 69  RIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K   ++L D+ K+TVDFRPN+D S +EP VL ARYPN+LVNG  GIAVGMATNIP HN+
Sbjct: 129 SKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPHNM 188

Query: 196 GEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           GEV+   + +IDN           + + + LMEI+ GPDFPTG  ILGR GI+ AY TG+
Sbjct: 189 GEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQILGRYGIEQAYRTGK 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + IR  + IE+ S  +  I++TEIPYQVNK+ ++EKIAELV+ K++  I  +RDESDR
Sbjct: 249 GKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIEL+R  +A++ILNQLY+++ LQ  FS+NM+AL   +P  F L  +L+A++  +
Sbjct: 309 DGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPHVFNLKEMLEAYLDHQ 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVA--NLDEVVRIIRFSPNPETARRELMQRSWN 423
           ++V+ RRT++ L+KA+ RAH++ G  I +    +D V+ +IR S     A+ +L+++   
Sbjct: 369 KQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIEK--- 425

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                            IG      LSE+Q +AI+++RL  LTGL  D +  E N L  +
Sbjct: 426 -----------------IG------LSEIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDK 462

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I     +L    +LL +IK+EL+ V+++   PRR+ +   LLD  ++ ED I  E++VVT
Sbjct: 463 IAYLKSLLEHEDQLLKVIKEELIVVREKFTDPRRSEL--SLLDDEIDIEDLIDEEEVVVT 520

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++H GY+KR PL  Y+ Q+RGG+G  GV   +EDF+  LF  S    ++FF++ G  YK 
Sbjct: 521 ITHFGYIKRXPLVTYKEQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKI 580

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K +++P  S  ARG A++N+L LN  E+I+ + P  ++E      Y+   TK G +++  
Sbjct: 581 KAYKIPEASRTARGLAIVNLLHLNVDEKISAVFPVKQNEHER---YLTMITKKGLIKKTN 637

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           ++ F  I + G IA+ +   DE++ V   T ++ I++ TK G  + F    IR   GR +
Sbjct: 638 ITAFNNIKKGGIIALTMQDADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRP-TGRTA 696

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVR I+L+K D V                                             +
Sbjct: 697 KGVRAINLSKEDYV---------------------------------------------I 711

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              I +E  Q        IL  ++ G GKRT   +F+   R GKG+    V   ++ G +
Sbjct: 712 SATIPKEGEQ--------ILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVD--DKTGDV 761

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           VA+  V+D++ +++++ +G +IR+ V++I    R  KGV + +      VV +E++ E
Sbjct: 762 VAITSVSDSNGLLMITSEGVIIRIKVSQISSLGRYAKGVKLINLTDGIHVVCMEKVAE 819


>gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381]
 gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/928 (40%), Positives = 549/928 (59%), Gaps = 130/928 (14%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  V + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 6   ENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSKSPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+  ++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+VDG + ++D+ +  L+ +M  I+GPDFPTG VI G+ GI +AY TGRG + IR
Sbjct: 186 PHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIFGKKGIIDAYRTGRGRVKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ S +++ I++ E+PYQ NKA ++E+IA LV++K I  I+++RDESDR+G RVV
Sbjct: 246 AKTHIEQKS-NKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T++++ F V M+A++  +P+ FTLI +LK F+  R+ V++R
Sbjct: 305 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDNKEPKIFTLIELLKLFLNHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +           
Sbjct: 365 RTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQ----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q  AIL+++L RLTGL R+ I NEL  +  EI+    IL
Sbjct: 414 ---------------FSLSEIQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + +  IIK EL+ +K++ + PR T IV+   D+E ED I  E+M+VT++H GY+KRV
Sbjct: 459 KSETLIEQIIKDELIEIKNKFNCPRITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKG+  +   D+DF+   F    H +++F ++ G +Y  KV+++P GS 
Sbjct: 519 PSKTYEKQKRGGKGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N++ L   E+I  I+P  +     NN  + F TK+G V+R  LS++  I  +
Sbjct: 579 TAKGKAVVNLIDLQADEKIMAIIPTTD---FNNNKSLCFFTKNGIVKRTNLSEYQNIRST 635

Query: 672 GKIAMKLDSRDEILSV--------ETCTQEND---------------------------- 695
           G  A+KLD  DE+++         E  + E D                            
Sbjct: 636 GIKAIKLDDDDEVVTALIAERDINENLSNEKDLKSNDEIFGDEDELDSNDEILENENSEN 695

Query: 696 ---------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                    I++ T+ G C++F +S +R   GR S GV  I   + D  +  A VL +D 
Sbjct: 696 ENSQEDGTKIIVVTQKGMCIKFMLSNVREI-GRVSRGVTAIKFKEKDDKVVGAAVLQSD- 753

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                             EQ IL+VS  
Sbjct: 754 --------------------------------------------------EQEILSVSSN 763

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G GKRT++ ++R++ R GKG+    ++K  + G L+ V  V++N+ ++ ++  G +IRV 
Sbjct: 764 GIGKRTAAGEYRLTKRGGKGVICMKLTK--KTGELIGVVIVDENEDLMALTTSGKMIRVD 821

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  IR A R T GV++ +   DE VVS+
Sbjct: 822 MQSIRKAGRNTSGVIVVNVDGDE-VVSI 848


>gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
 gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
          Length = 993

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/951 (39%), Positives = 545/951 (57%), Gaps = 90/951 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE++NSYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G+ GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD+ G R+ I+L
Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L++ T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W A ++  L++  
Sbjct: 366 FELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLEKA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D S   G DG +Y LS  Q  AILELRL RLTGL +D ++ E   + 
Sbjct: 426 GSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +IK+EL  +  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S H +VL F+++G VY+ 
Sbjct: 546 VSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVFATKH 654
           +V+ +P  S  ++G+ ++N+L L+  E IT I+P       F E  + + N      +  
Sbjct: 606 RVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKERLAEFKNF---VRSNV 662

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI----------LSVETCTQEND--------- 695
             +R N + D              +  DE+          L VE  T + D         
Sbjct: 663 ATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETVVEFAD 722

Query: 696 ----------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                     + + T  G   R  +     F+   S G+R I L + D +I +AI     
Sbjct: 723 LAEKMRKNFFVFMATASGTVKRVELEQ---FSNVRSNGLRAIELKEEDTLIGVAIT---- 775

Query: 746 ADYDERICYMKHMSAQRRLISGD----------------TEEITSLKNDSSVEGNISEER 789
            D +++I    +     R    D                T      ++D   + +  +E 
Sbjct: 776 -DGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEE 834

Query: 790 CQELKLKEQF-----------ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             +L +  +            +L  S  G+GKRT   DF    R GKG+ A   S+ N  
Sbjct: 835 SSDLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN-- 892

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           G LV    ++++ +++L+SD GTL+R   +E+    R  +GV +     +E
Sbjct: 893 GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEE 943


>gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 809

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/881 (42%), Positives = 537/881 (60%), Gaps = 88/881 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM++SYL YA++VI+ RA+PD+RDGLKPV RR L+ M Q+G+  + +Y K A
Sbjct: 6   VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+  YHPHG++A+YD L RMAQD++LR  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 66  GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD S +EPVVL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ DG + +ID+PD  ++ L +I++GPDFPTG +ILGR GI +AY TG+G I++R  +H
Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIILGREGILSAYGTGKGKIIVRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G+R  I+VTE+PYQVNKAA++EKIAELV+E+RI  I+D+RDESDR G R+VIEL+
Sbjct: 246 IEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIELR 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           R A    +LNQLY++T +Q+ F VN +AL +G  P   TL  +++ ++  R+ V+ RRT+
Sbjct: 306 REAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRTE 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR RAHVL GL IA++NLD V+  IR S + + A+ +LMQ               
Sbjct: 366 YDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQ--------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ +AIL+++L RL  L R  I +EL  +  +I+E   IL+S 
Sbjct: 411 -----------DFGLTEVQAQAILDMQLRRLAALERQKIEDELKEVRAQIREYESILASP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L I+K +L  ++D+    RRT+IVE   D+ DED I   ++ V+V+  GY+KR+P  
Sbjct: 460 EKVLAIVKSDLQEIRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPD 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGG+G +GV ++D D V  L + +T  SVLFF++ G VY+ K   +P  S  ++
Sbjct: 520 TYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSK 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  L+N+++L   ER+T ++   E +    + Y+   TK+G ++R  L ++  +  +G I
Sbjct: 580 GLPLVNLINLEPHERVTEVIAVREFKP---DRYLTTITKNGKIKRTSLEEYSSVRSNGLI 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM L+  DE+  V      +DIL+ T  GQ +RFP S +R   GR ++GV  I       
Sbjct: 637 AMSLEEGDELRDVRLLGDNDDILVLTAKGQSIRFPASDVRP-TGRQAIGVTAI------- 688

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                       RL  GD  E+ ++                E+ 
Sbjct: 689 ----------------------------RLSEGD--EVVAM----------------EVV 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853
                IL V++KGFGKRTS  +F    R+G G RA    KI+E  G L       ++ ++
Sbjct: 703 QSGAEILLVTKKGFGKRTSIDEFNRQARAGSGARAI---KIDEKTGDLATARMAPEDSEV 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ S  G ++R+  N I   S+A +GV + +   ++ V S+
Sbjct: 760 LIASASGQVVRLKTNTISKQSKAARGVSLMTLKPNDSVTSL 800



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 5/99 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++++ T+++ G  KRTS  ++  S+    G+ A  + + +E   L  V  + DND I+++
Sbjct: 607 DRYLTTITKNGKIKRTSLEEY--SSVRSNGLIAMSLEEGDE---LRDVRLLGDNDDILVL 661

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + KG  IR P +++R   R   GV     ++ + VV++E
Sbjct: 662 TAKGQSIRFPASDVRPTGRQAIGVTAIRLSEGDEVVAME 700


>gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
 gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri]
 gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
          Length = 829

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/883 (40%), Positives = 541/883 (61%), Gaps = 84/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 10  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE ++
Sbjct: 70  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV++G   +++NPDI  + LM+ I GPDFPTG V++G++GI+ AY TGRG+I++R    
Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAKVD 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ DE+DR G R+VI+++
Sbjct: 250 IEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVR 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E VV RRT++
Sbjct: 310 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM                 
Sbjct: 370 ELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYG------------- 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I +E   L   I +  DIL+ R 
Sbjct: 417 -------------LSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRE 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  EL+ ++      RRT +  G + ++EDED I  ED++V ++H GY+KR+P+ 
Sbjct: 464 RINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVD 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY  K + +P     A+
Sbjct: 524 EFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQ 583

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N  E+I+ ++     E++ ++ Y+ F TK G V+R  +++F  I  +G  
Sbjct: 584 GIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLK 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ VE  +++  +++ T  G  + F  S +R   GR++ GVRGI L   D 
Sbjct: 643 ALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GRSAAGVRGIRLRDEDY 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  A                                   L +DS V             
Sbjct: 702 VIGAA----------------------------------PLNSDSKV------------- 714

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L +SE GFGK+T + ++ I  R G G++  +V+  N  G LV +  VN ++ I+
Sbjct: 715 ------LVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKN--GPLVGLTTVNGDEDIM 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LV+D+G +IR  +  +    R+  GV +       RV ++ ++
Sbjct: 767 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV 809


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/886 (41%), Positives = 526/886 (59%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+  +K + K A
Sbjct: 4   IVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE +GK+HPHG+ A+YDAL RMAQD+S+R  LIEGQGNFGS+DGD  AA RYTE RL
Sbjct: 64  RIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF+PN+DGS +EP VL A++PN+LVNG  GIAVGMATNIP HN+
Sbjct: 124 SKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPHNI 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV      ++D+P+   + LM+ I+GPDFPTGA ++    +   Y  GRGS+ IR    
Sbjct: 184 SEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINPEELPKIYKKGRGSVTIRAKHT 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R  IV+TE+PYQVNKA +++KIAELV+EK+I  IAD+RDESDR+G RVVIELK
Sbjct: 244 IEEVR-KRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LN+LY+ T LQ+ F+ NM+AL   +P+   L   L+ F+ FR EV++RRT Y
Sbjct: 303 RDATPQVVLNRLYKLTPLQTNFNFNMIALVNGEPKLLNLKRYLEEFIGFRREVILRRTAY 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KA  R H+L GL  A+ N+D VV++++ +P+P+ A   L ++               
Sbjct: 363 LLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREK--------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL+++L RLTGL R+ I  E  +L  E      ++ S  
Sbjct: 408 -----------FELSEAQAKAILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQ 456

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               +IK+E+  + ++    RRT+IV    +++ E  I  E++++ ++H G+V RV    
Sbjct: 457 EQRRLIKEEMAQIIEKFGDQRRTKIVSKESEIDIESMIEDEEVIIFLTHKGFVARVSAGT 516

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q R G G  G+  R+ DFV D+   S+   +L F++ G VY  K + +P     +RG
Sbjct: 517 YRTQSRSGTGVRGIKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRG 576

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            ++ N L    G  I + +  P  E S N   V F T+ G V+R  L +F     +G  A
Sbjct: 577 HSIRNFLPGMAGNEIVSRI-IPVKEFSLNK-DVFFVTQRGYVKRTPLKEFSNPRSTGINA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D ++ V   + +++I+L +K G+ ++FP++ +R   GRN+ GVRGI L   D V
Sbjct: 635 INLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQM-GRNARGVRGILLDPDDSV 693

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++ A+V   D                                                  
Sbjct: 694 VAAAVVEPED-------------------------------------------------- 703

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             +F+L V+EKG+GKR    +F +  R GKG+ A  +S+  + G +     + D++ IIL
Sbjct: 704 --RFLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSE--KTGKVADATTLKDDEPIIL 759

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VS KG +IRV   +I +  R T+GV I   A+D+ VVSV ++ E+E
Sbjct: 760 VSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAE 805



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 14/214 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V  V+  GYVKR PL  +   R    G + + +   D +  + +VS   +++  S  G  
Sbjct: 607 VFFVTQRGYVKRTPLKEFSNPR--STGINAINLEPGDRLVYVGLVSDKDNIILISKNGRA 664

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            K  V  +      ARG  +  IL       +   +  PED       +++  T+ G  +
Sbjct: 665 IKFPVADVRQMGRNARG--VRGILLDPDDSVVAAAVVEPEDR------FLLIVTEKGYGK 716

Query: 659 RNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R ++ +F    R GK  IA KL  +  ++    T   +  I+L +K G+ +R   + I V
Sbjct: 717 RVEIEEFHLQRRGGKGLIAAKLSEKTGKVADATTLKDDEPIILVSKKGKIIRVKSADIPV 776

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           + GR++ GVR   LA+ D V+S++ V  A+ + D
Sbjct: 777 Y-GRHTRGVRIQKLAEDDAVVSVSKVTEAEEEND 809


>gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4]
 gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4]
          Length = 872

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/887 (39%), Positives = 543/887 (61%), Gaps = 67/887 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++G   +K Y K A
Sbjct: 7   IIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+++IY  L RMAQ WS+R  L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 67  RIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +  +L D+ KDTVDF+ N+D + +EP VL +R PN+LVNG  GIAVGMATN+  HNL
Sbjct: 127 RKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMAPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  +A IDN DI++  +++ I+ PDFPTG +I G  G+K A+ TGRG IV+R    
Sbjct: 187 SEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIYGYAGVKEAFETGRGRIVVRSKVE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  RE+IV+ EIPYQVNK  +++ +  LV +K++  IA + DESDR+G R+V+++K
Sbjct: 247 IETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIVVDVK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A++ V+LN+L++YT+LQS FSVN +AL   +P    +  ++  FV  R EVV+RRT++
Sbjct: 307 RDANSSVVLNKLFKYTALQSSFSVNNIALVHGRPRMLNVKDLIHYFVEHRHEVVIRRTRF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  RAH+L G  I + NLDE ++IIR S  P+ AR  LM+R               
Sbjct: 367 ELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMER--------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q+RAI+E+RL +LTG+ +D +R E   +   I    +IL    
Sbjct: 412 -----------FGLSEIQSRAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEILEKIE 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + IIK ELL VK +    RRT+IV    +   ED    ++M++T+SHLGY+KR  LS 
Sbjct: 461 LRMQIIKDELLEVKAKYGDARRTQIVYSSEEFNPEDFYADDEMIITISHLGYIKRTALSE 520

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGG G  G   RDEDF+  ++  S H ++LFF+S G  Y  KV+ +P GS  ++G
Sbjct: 521 FRAQGRGGVGSKGSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSKNSKG 580

Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L+++  +++   +      D     + Y++FATK+G +++  L  + +  ++G 
Sbjct: 581 RAIQNMLNIDNDDKVNAFIRVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPRQNGV 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
            A+ +   D+++ V      +++L+  + G+ +RF  S +R   GR + GVRG++L +  
Sbjct: 641 NAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREM-GRTATGVRGMTLDEDG 699

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+++ M  V   D   +E I  +      +R +  + ++          EGN       
Sbjct: 700 EDELVGMICVNKED---NENIMVVSQQGYGKRTLLDEVDD----------EGN------- 739

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                    L + E G     +   +R++NR GKG++  +++  ++ G LV +  V D +
Sbjct: 740 ---------LMLDENG----ETIPVYRVTNRGGKGVKTMNIT--DKTGKLVTIKNVTDEN 784

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            +++++  G  IR+ V + R+  RAT+GV + +  K ++ + SV ++
Sbjct: 785 DLMIINKSGITIRLKVADFRVMGRATQGVRLINLEKRNDEIASVCKV 831


>gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
 gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
          Length = 859

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/856 (41%), Positives = 542/856 (63%), Gaps = 39/856 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +++ +EM  S+L Y+++VI+ RA+PD RDGLKP  RRIL  M  +GV  N+K++KCA
Sbjct: 10  VQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLPNRKHIKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+ MG YHPHG+ AIY  L  MAQ W++R +L++GQGNFGSV+GDPPA+ RYTE RL
Sbjct: 70  KIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPASMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +     L+DD+ K+TVDF P YD    EPVVL A +PN+LVNGG GIAVGMATNIP HNL
Sbjct: 130 RWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E ++G  A IDNP+I LD LM+ ++GPDFPTG ++ G  GI++ + TGRGS+ +RG + 
Sbjct: 190 SECINGICAQIDNPNITLDELMQYVKGPDFPTGCILQGSAGIRSYFETGRGSVRVRGRAS 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G REQI+VTEIPY VN+A ++++IAEL  EK +  I+D+RDESD +  RVVI+LK
Sbjct: 250 FEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESD-ENTRVVIDLK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +  VILN L+++T+L+S FSVNM+A++  +P    L   +  ++  R E+++RRT++
Sbjct: 309 RDGNPKVILNNLFKHTALESSFSVNMLAIDHGRPRLLGLKDAIACYIEHRREIILRRTRF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLN A   A  L G  IA+ANLD+ +RIIR S + + A+ +LM  SW  + ++ L  LI 
Sbjct: 369 LLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARAAVEQLGVLIR 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             +  +  DG    +E Q   IL+LRL +LTGL R+ I++E + L + I++ +DIL+   
Sbjct: 429 SEARVV--DGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDLMDILAKEH 486

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L IIK EL +++D+  + RRT IV    ++  ED I  E ++VT++H G++KR  +S 
Sbjct: 487 RVLTIIKDELRAIQDKYGSERRTEIVPEQGEIAIEDLIANEGVIVTLTHNGFIKRTAVSA 546

Query: 556 YRAQRRGGKG------RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           YRAQRRGGKG      R G    D DFV  LF  +TH  ++FF+  G  Y E+V+ +P G
Sbjct: 547 YRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFTVEGRCYVERVFEIPEG 606

Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDF 665
           +  ++G+++ N+L L Q E+I     I     +E +W++ L++VFAT+ G V+++ L++F
Sbjct: 607 TRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIVFATRSGIVKKSNLNEF 666

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I + G IA+++++ D ++  +  T  ++I+L T  G  +RF    +R   GRN+VGV 
Sbjct: 667 KNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFNEGELR-DQGRNTVGVW 725

Query: 726 GISLAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKN- 777
           GI     D V++ A+V       +  +    +R  + ++     R+ S   + I ++K  
Sbjct: 726 GIRPDTKDYVVAAALVNKEAMLLVAGENGIGKRTGFDEY-----RIQSRGGKGIITMKTT 780

Query: 778 --DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
               SV G ++     EL L       ++ KG   RT   + R + R+ +G++  D+ + 
Sbjct: 781 DKTGSVAGALTVVETDELML-------ITNKGKMVRTRVAEIRETGRNAQGVKLIDLRE- 832

Query: 836 NEIGALVAVFPVNDND 851
           NEI  L  + PV  N+
Sbjct: 833 NEI--LQGIAPVVSNE 846


>gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
 gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
          Length = 837

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/883 (41%), Positives = 545/883 (61%), Gaps = 85/883 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+ NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  TL  I+  ++  + EV+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYIKHQIEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++  R+  II +E+  +K +    RRT ++ G +L +EDED I  ED+++T S+ GY+KR
Sbjct: 456 ANPERVKAIIIEEMDEIKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITFSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+    ++      Y  F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEEETIQTIIKAKREDIEGK--YFFFTTRQGLVKRTNASEFHNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+LG  VRF  S+IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLMTNGQEDIIIGTRLGYSVRFNESSIRQM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  A                         I+ D E                    
Sbjct: 693 DQDLVVGAA------------------------RITDDQE-------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++E G+GK+T + ++    R GKGI+  +++  N  G +  +  V+  
Sbjct: 709 ---------VLIITENGYGKKTLASEYPTKGRGGKGIKTANITAKN--GPIAGLVTVSGQ 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + I+++++KG +IR  ++++    RAT GV +    +D ++V+
Sbjct: 758 EDIMIITNKGVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVT 800



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +ED+++  + LGY  R   S  R   R   G  GV +RD+D V     ++    VL  + 
Sbjct: 656 QEDIIIG-TRLGYSVRFNESSIRQMGRSATGVRGVKLRDQDLVVGAARITDDQEVLIITE 714

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+  K      P      +G    NI + N        +   ED        ++  T  
Sbjct: 715 NGYGKKTLASEYPTKGRGGKGIKTANITAKNGPIAGLVTVSGQED--------IMIITNK 766

Query: 655 GNVRRNKLSDFIQINRS--GKIAMKLDSRDEILS---VETCTQENDI 696
           G + R  +SD  Q  R+  G   M+LD   +I++   VE   +  DI
Sbjct: 767 GVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVTFALVEAEAETEDI 813


>gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 843

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/902 (40%), Positives = 547/902 (60%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    IT V+++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K
Sbjct: 3   EELSGRITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ K+TVDF+ NYDG+ +EP +L AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TG G+I+
Sbjct: 183 IPPHNLSEVISAIHILMNNEDATTADLMEAVPGPDFPTGGIVMGKSGIRKAYETGHGTII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G R
Sbjct: 243 LRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+   L  IL+ ++  +EEV+
Sbjct: 303 VVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLGLKEILQHYLVHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM           
Sbjct: 363 RRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLM----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                  ++Y+        LS  Q +AIL++RL RLTGL R+ + +E N +   I +  D
Sbjct: 412 -------NNYS--------LSSKQAQAILDMRLVRLTGLEREKVEDEYNKVMAAITDYRD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ R R+  II +ELL +++     RRT ++ G +L +EDED I  ED++VT++H GY+
Sbjct: 457 ILAHRERINEIIYKELLEIQERFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S ++ Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P 
Sbjct: 517 KRMATSEFKTQNRGGRGIQGMGVHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWN--NLYVVFATKHGNVRRNKLSDFI 666
            S  A+G  +IN+L ++ GE I  ++    D    +  N Y+ F T +G  +R  +++F+
Sbjct: 577 YSRTAKGIPVINLLGISSGENIQAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFL 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     E +I++ T  G  V F  + +R   GR++ GVRG
Sbjct: 637 NIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSM-GRSATGVRG 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  AI                                  LK +S V     
Sbjct: 696 IRLRDEDYVVGSAI----------------------------------LKPESKV----- 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                         L ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  +  
Sbjct: 717 --------------LVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKN--GPLAGLVT 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + ++L++D+G +IR  VN +    RAT GV +  T ++ +V ++  + E+ + DE 
Sbjct: 761 VEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVIKTDENSKVATMAIVDEAPVDDEN 820

Query: 907 ES 908
           ++
Sbjct: 821 QT 822


>gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811]
 gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 851

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/901 (41%), Positives = 547/901 (60%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A++  + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLIHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                         DG + LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 --------------DGYL-LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT +  G + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++     E+  +  Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINV-RGEAGESKDYLFFVTRLGVVKRTAVSEFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       I++ TK G  VRF    +R+  GR + GVRGI 
Sbjct: 636 RTNGLKALTLRDDDEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIM-GRAAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD VI   +V                                SL ++          
Sbjct: 695 LRDGDLVIGSDVV--------------------------------SLNDN---------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 -----------VLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GTLAGMIIVH 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906
            ++ I++ + +G +IR     +    RAT GV +       +V ++ ++   ES +VD  
Sbjct: 760 GDEDIMVTTTQGVMIRFTTESVSQTGRATLGVRLIRLEDGAKVATLAKVEHEESLVVDAK 819

Query: 907 E 907
           E
Sbjct: 820 E 820


>gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
 gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
          Length = 826

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/887 (41%), Positives = 541/887 (60%), Gaps = 97/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + +  KY K A
Sbjct: 10  VQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSFGAKYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 70  RIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP HN 
Sbjct: 130 TKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHNP 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G  A+++NP+I L  +ME I+ PDFPTG +I G+ GI +AY TGRG I +R  +H
Sbjct: 190 TEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVRAKTH 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G+R+ IV+ E+PYQVNKA ++E +A LV++K I  ++++RDESDR G RVVIELK
Sbjct: 250 IEK-KGNRDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRDGMRVVIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ TS+Q+ F + M+++   +P  F LI ILK F+  R+ +++RRT +
Sbjct: 309 RDAISEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGLIDILKHFINHRKTIIIRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL  A+  +D+V+R+IR S   E A+  L+                 
Sbjct: 369 DLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSE--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE+Q  +I+ +RL RLTGL  + I NEL  L   I+    IL S  
Sbjct: 414 -----------FDFSEIQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSED 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L GII +E   V     T RRT I +   D++ ED I  E MVVT++H GY+KRVPL+ 
Sbjct: 463 VLHGIIAEEFDEVLTTYTTKRRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLAS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG++ V   ++DF+ + F  +TH ++LF +  G ++  KV+R+P GS  A+G
Sbjct: 523 YEKQKRGGKGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSRTAKG 582

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L   E+I +I+P   F ED+S      +VF TK+G V+R  LS+F  I  +G
Sbjct: 583 KAVVNLINLQADEQIQSIIPTTDFSEDKS------LVFFTKNGIVKRTNLSEFSNIRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  D +++ +   +    + + TKL QC++F I   R   GR++ GVRGI    
Sbjct: 637 VRAIVLDDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTRE-QGRSTRGVRGIKFKH 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+   I+   D                                             
Sbjct: 696 EGDEVVDANIIASDD--------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849
                  Q IL V+EKG GKRT + ++R++NR G G+ A  ++   + G  +V    V++
Sbjct: 711 -------QEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYIVGCLMVDE 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +  ++ ++  G +IRV +  I  +SR T GV I    K + VVS+ R
Sbjct: 762 SMDMMALTKAGKMIRVDMQTISKSSRNTSGVYI---VKGDEVVSISR 805


>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
 gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
          Length = 850

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/893 (41%), Positives = 534/893 (59%), Gaps = 95/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTV+F PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EVV   V +IDN      +  ++ LMEI++GPDFPTGA ILGR  I+ AY TGR  I +
Sbjct: 189 REVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATILGRRAIEQAYRTGRSKIKV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V++IE  +  + +I+V+E+PY VNKA ++EKIA+LV+EK+I  I  + DES+R+G R+
Sbjct: 249 RAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L  ++  +E+VV 
Sbjct: 309 NIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQPKVLNLHQMLDYYLKHQEDVVR 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA +RAH+L GL IA+ ++DEV+ IIR S N   A+R L +R          
Sbjct: 369 RRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERFG-------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL  LTGL R+ I NE   L   I E   I
Sbjct: 421 ------------------LSDAQAQAIVDMRLRALTGLEREKIENEYKELQARISELKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LL +IK E+  + D+    RRT I     DM  ED I  ED V+ ++HLGY+KR
Sbjct: 463 LADEKKLLTVIKDEITVIADKYGDDRRTAIGYD-DDMSMEDLIPDEDTVIAMTHLGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +R+Q RGGKG  G+   +ED++ DL + + H  V+ F++ G VY+ K + +P   
Sbjct: 522 MDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAG 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG A++N+L L   E+IT I+P  E    +N + Y+  ATK G V++  + ++  + 
Sbjct: 582 RTARGTAIVNLLQLQPEEKITAIIPMRE----YNEDKYLFMATKGGMVKKTPMCEYENVR 637

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+    + DI L TK G C+RF  + +RV  GR S+GV G+  
Sbjct: 638 KNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDVRV-TGRVSMGVIGMRF 696

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VI M                   M++Q     GD+                    
Sbjct: 697 EDGDEVIGM------------------QMASQ-----GDS-------------------- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L VSE G GKRT   +F   NR GKG+    +++  + G L+    V+D
Sbjct: 714 ----------LLVVSENGMGKRTVINEFSAQNRGGKGVICYKITE--KTGCLIGAKLVDD 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRES 900
             +I++++ +G +IR+ V++I +  R T GV + +   D   +V S+ ++RES
Sbjct: 762 GREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVASIAKVRES 814


>gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 788

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/858 (41%), Positives = 525/858 (61%), Gaps = 85/858 (9%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPD
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPTGA+++G++GI  AY TG+GSI +R  + IE T   RE+IVVTE PY VNK  + E I
Sbjct: 181 FPTGALVMGKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHI 240

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
             LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+
Sbjct: 241 VRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAI 300

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P+  +L  IL A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RII
Sbjct: 301 QNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRII 360

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S     A+ ELM +                            LSE Q++AIL++RL R
Sbjct: 361 RASETDAEAQAELMSK--------------------------FKLSERQSQAILDMRLRR 394

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG- 523
           LTGL RD I++E + L   I +  DIL+   R+  IIK EL  VK +    RRT ++ G 
Sbjct: 395 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQ 454

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   
Sbjct: 455 VLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST 514

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           STH  +LFF++ G VY+ K + +P     A+G  ++N+L L++ E I T++    D S  
Sbjct: 515 STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS-- 572

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G
Sbjct: 573 DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFG 632

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VRF  SA+R  + R + GV+G++L +GD V+  +++     D DE             
Sbjct: 633 YAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLI----TDQDE------------- 674

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                               +L ++EKG+GKRT + ++    R 
Sbjct: 675 ------------------------------------VLIITEKGYGKRTVATEYPTKGRG 698

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKG++   +++ N  G L  +  V  ++ +++++D G +IR  +  I    RAT GV + 
Sbjct: 699 GKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVM 756

Query: 884 STAKDERVVSVERIRESE 901
              +D ++V+   +  +E
Sbjct: 757 RLDQDAQIVTFTTVAVAE 774



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 470 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 526

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 527 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 575


>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
 gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
 gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
 gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/884 (41%), Positives = 545/884 (61%), Gaps = 62/884 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++EM +SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 8   IIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  + + LL D+  +TVDF  N+DGS QEPVVL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I NP++    L ++I GPDFPTG  ILGR+GI++AY +GRGSI +RGV+
Sbjct: 188 LGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQILGRSGIRDAYTSGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DR+ I+VTE+PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR G R+
Sbjct: 248 QIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDESDRDGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T +QS F  NM+AL   +P+  TL   L  F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGEPQLLTLKQFLTVFLEFRVETIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++R H+L GL IA+ NLD V+++IR + +  TAR  L+++          
Sbjct: 368 RRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQ---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS VQ  AIL+++L RLT L  + I  E   L  +I +  DI
Sbjct: 418 ----------------FGLSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIADLQDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+  II++EL  +K    TPRRT I+    ++ D D I  E  ++ ++  GY+KR
Sbjct: 462 LARRERIEAIIEEELTQIKTIHATPRRTEIIHDEGEIVDTDLIANEQAIILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + AQ R  +G++   ++++D V        H  VLFFS  G VY    +++P  S
Sbjct: 522 MPVSTFGAQSRATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQIPAAS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + + E+IT+I+   E      ++Y +  T+ G +++  LS F  I  
Sbjct: 582 RTARGVPIVQMLPIPKDEKITSIVAVSE---FREDVYFIMLTRKGYIKKTALSAFSNIRT 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L   D++  V+   +E+ I++ T+LG  + F     ++   GR++ GV+ + L
Sbjct: 639 NGLIAIVLGEGDQLRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPLGRSTRGVKAMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD++ISM I                 +S+Q  +I+G    I+++      E  +  E 
Sbjct: 699 KKGDELISMDI-----------------LSSQ--VIAG----ISTVHEGEEEEDLLENEE 735

Query: 790 CQELKLKE--QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              ++      +ILT++  G+GKR     FR+ NR+G G+R       ++   L ++  V
Sbjct: 736 ELTVEETSGGPWILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKFKSPSD--RLASLLVV 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N+ D++++VS++G +IR  V+ I   SR   GV +    +D+ +
Sbjct: 794 NEEDELMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLDEDDAI 837


>gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 828

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/895 (41%), Positives = 541/895 (60%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K A
Sbjct: 6   ILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GK+HPHG+ A+YD+L R+ QD+S+R  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K TVDF  N+D S +EP VL +  PN+L NG  GIAVGMATNIP  NL
Sbjct: 126 KAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+VDG +A+I NP++++  LM+ +  PDFPTG +I G  G++NAY TGRG +VIR  + 
Sbjct: 186 REIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIYGYEGVRNAYMTGRGKVVIRARAL 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+VIEL
Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V M+AL    P    L  ++  ++  R E+V+RRTK
Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMIYYIKHRNEIVLRRTK 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+ A  RAH+L GL I + NLDEV+  IR SP+  TA+ +LM+R              
Sbjct: 366 FDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q++AILE+RL RLTG+ R  I  E       I+    ILSS 
Sbjct: 412 ------------FGLSELQSKAILEMRLQRLTGMERKKIDMEYTETLALIEALKFILSSP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 EKQMEIIREELLKVREVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G +G   + +DF+  +FI STH  +LFF++ G  Y  KV+ +P     AR
Sbjct: 520 GYRRQARGGQGVTGAQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G+AL NI+ L  GE+I   +     DE      ++V AT +G V++  L DF    R+G 
Sbjct: 580 GRALANIMELQPGEKIRAYINIRNFDEPG----FIVMATTNGIVKKTPLDDFSHPRRNGL 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ ++  DE+L       E+ I+L    G  VRF  + IR   GR ++GV+GI+L +G+
Sbjct: 636 AAITIEEHDELLDARLTDGEHQIILAKSSGFVVRFAEAEIRSM-GRTAMGVKGITLDEGE 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + ISM                                 +T+ + D++             
Sbjct: 695 KCISM---------------------------------VTTKRFDTA------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V++ GFGKR+   D+R++ R  +G+    +    +IGALV +  VND+D +
Sbjct: 709 ------LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKAHEKIGALVGLLDVNDDDDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           I+++  G + R  V++IR+  R T GV +      + + ++ R+ +S+  DE +S
Sbjct: 761 IIITTHGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALARVPKSD--DEGDS 813


>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 874

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/884 (40%), Positives = 521/884 (58%), Gaps = 82/884 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V I ++++ +YL Y+++VI+ RA+PD+RDGLKP  RRI++ M ++ +     +
Sbjct: 3   ETTNIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I+G+  G YHPHG   +Y  L R+AQ W +R  LIEGQGNFGS+DGDPPAA RYT
Sbjct: 63  RKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RLQK    +L +L KDTV+FR NYD + QEP V  AR+PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+GEV D  +A+IDNPD+    L+E I+GPDFPTG  ILG  GI+  + TGRG I++R
Sbjct: 183 PHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE    D EQI++  IPYQ++ + ++E++ ELV++K+I  I+D+RDES R G R+V
Sbjct: 243 GETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           I++KR   A V+ N LY+YT LQS F V N+  ++G  P+   +  +L+ F+ FR EVV+
Sbjct: 303 IQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGV-PQVVNMKEMLQNFIDFRHEVVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A++R H+L GL IA+ NLDEV+ +IR S  P  A                 
Sbjct: 362 RRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDA----------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                    ++G      LSE+Q +AIL++RL RLTGL RD I  E   L I I    ++
Sbjct: 405 ---------SVGLQEKFGLSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTEL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGY 547
           +  +   + +IK+E   ++D+    R T I+    G  +M  ED I  E +VVT++H GY
Sbjct: 456 VEHKELRMNLIKEETAEIRDKFADKRLTTIIPAPAGSFNM--EDLIADEMVVVTITHDGY 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+P+  Y+ Q RGGKG S   +++EDF+  LF+ STH+ +L F+  G  Y  KV+ +P
Sbjct: 514 VKRLPVDTYKVQARGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIP 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARGKA++N++ L +G+RI   +   +     N   +V  T++G V++  L+ F  
Sbjct: 574 EASRTARGKAIVNLVKLAEGDRIKAFVTLKDFHPEQN---IVMCTRNGLVKKTPLTAFSH 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G  A+KL   DE++    C   +DILL T  G+C RF  S IR    R S GV+GI
Sbjct: 631 PRSIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSMR-RFSQGVKGI 689

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD VISM I                  +AQ +L +G        K +SS       
Sbjct: 690 RLRNGDYVISMTIA-----------------TAQDQLENG--------KPNSST------ 718

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL +SEKG+GKR+    + ++ R   G+     ++ N  G L A+  V
Sbjct: 719 ------------ILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERN--GYLAALMLV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            D+D +++++  G +IR  V+EI +  R T GV + + A ++ V
Sbjct: 765 RDDDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVV 808


>gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
 gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
          Length = 830

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/904 (41%), Positives = 533/904 (58%), Gaps = 96/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++S +ITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RR+L+ M++ G+  N+ + KCA
Sbjct: 8   LSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFDKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+  YHPHG++++YD L RMAQ W +R  LI+ QGNFGSVDGDP AA RYTECRL
Sbjct: 68  GVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTECRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ +DTVDF PNY  S  EP VL A  PN+L+NG  GIAVGM TNIP HNL
Sbjct: 128 NAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D   A+IDNP I +D L  I++GPDFPTG VI GR GI +   TG+G +  RG +H
Sbjct: 188 AEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIVRTRGKAH 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G  EQIVVTEIPY VN+A ++ +IAELV +K+I  I DLRDESD +  R+VIELK
Sbjct: 248 TEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESD-ENTRIVIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  + V++NQL++ T+L+S F V ++AL+  +P++  +  +++ ++  R EVV RRT++
Sbjct: 307 RGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRREVVTRRTRF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A DRAH+L G  IA+ NLD+ V+IIR S N E A+  LM +               
Sbjct: 367 RLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK--------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE QT AILELRL +LTGL R  I  E   L   I+E   IL S  
Sbjct: 412 -----------YPLSERQTDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEP 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +LL +IK+EL  +K++  +PRRT I+    +   ED I  E  V+TVSHLG++KR P++ 
Sbjct: 461 KLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAE 520

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG  G    +EDFV +LF  STH  +LFF+S+G  + +KV+ +P G+  ++G
Sbjct: 521 YRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKG 580

Query: 616 KALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           K++ + L L +GE+I  ++    F ED       Y+V ATK G ++++ LSD+    R G
Sbjct: 581 KSVSSFLRLAEGEKIAAMLCVKDFAEDR------YLVTATKRGIIKKSALSDYANATREG 634

Query: 673 K-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF----PISAIRVF--AGRNSVGVR 725
             I + L   D ++     T EN+++L +  G  VRF    P S   +F   GR + GV 
Sbjct: 635 GLIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVT 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+                  +DY + I  + H                            
Sbjct: 695 GMR-------------FKLKSDYLDVIEVVDH---------------------------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E   L  SE G G RT   D+R+ NR G G+ A D+ +   I  L    
Sbjct: 714 -----------EAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSI-KLAGAL 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V ++D+++L++ KG  IR PV +IR  +R  KGV + +    ++++S+ RI E+E    
Sbjct: 762 SVREDDEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDKLLSIARIVETEEESG 821

Query: 906 AEST 909
           AE+T
Sbjct: 822 AEAT 825


>gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 857

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/894 (41%), Positives = 538/894 (60%), Gaps = 87/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V+++  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV   K Y K A
Sbjct: 11  IENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPEKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+A+ RMAQ++S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 71  RIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+T+D+ PNYD S +EP VL AR+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 131 SKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++DNPD     LM+ + GPDFPTG +++G++GI++AY +G+G+I +R    
Sbjct: 191 AEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVMGKSGIRHAYESGKGTITLRAKVD 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE+I+VTEIPY VNKA ++E+IAEL R+KR+  I DL DESDR G R+VI+++
Sbjct: 251 VEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDRDGMRIVIDVR 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +EEV+ RRT++
Sbjct: 311 RDMSASVILNNLYKLTPLQTSFSFNMVAIVNGAPKVLSLKSILEHYLVHQEEVIRRRTEF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++D +++IIR S   +TA+  LM+R               
Sbjct: 371 DLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMER--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL RD + NE N+L   I +  DIL+   
Sbjct: 416 -----------YDLSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALITDLKDILAKPE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  ELL ++ +    RRT ++ G +L +EDED I  ED+V+ ++H GY+KR+P S
Sbjct: 465 RIKKIIYDELLEIQSKFGDKRRTELLVGEVLSIEDEDLIEEEDVVIALTHNGYIKRLPAS 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++ Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P     A+
Sbjct: 525 EFKVQNRGGRGIQGMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGYEIPEYGRTAK 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N  ER+ T++   ++      L+  F T+ G V+R  + +F  I  +G  
Sbjct: 585 GIPIINLLGINSDERVQTVVNIGKEVKPEQALF--FITRLGTVKRTAVGEFANIRSNGLK 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+ +V     + +I + T  G  V F  +A+R   GR + GVRGI L +GD 
Sbjct: 643 ALTLHEDDELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSM-GRTAAGVRGIRLREGDY 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+                                                       +L 
Sbjct: 702 VVG-----------------------------------------------------SDLL 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +  Q IL +SEKG+GKRT+  D+ I  R GKG++  ++++ N  G L  +  V   + I+
Sbjct: 709 IPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKN--GPLAGIAAVTGEEDIL 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           L++D G LIR  V  +    RAT GV +     + +V ++  + E+E  DE E+
Sbjct: 767 LITDTGVLIRFKVANVSQTGRATLGVRLIRVDDEAKVATMATV-EAE-PDEPET 818


>gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
 gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
          Length = 828

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/893 (41%), Positives = 553/893 (61%), Gaps = 99/893 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++IS    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIS----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+Y AL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EK   ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKMK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDVEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+++P  S  A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624

Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
           R  LS+F   NR  SG  A+ LD  DE++S +   ++   +L+ + LG  ++FP+  +R 
Sbjct: 625 RTNLSEFGS-NRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVRE 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GVRGI L + D V+  A+V++ D++                            
Sbjct: 684 I-GRNARGVRGIKLNENDFVVG-AVVINDDSNK--------------------------- 714

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L+VSE G GK+T +  +R  +R GKGI    +++ 
Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ- 749

Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
            + G LV+V  V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 750 -KTGNLVSVTSVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 VEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 840

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/902 (40%), Positives = 546/902 (60%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDARIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NP      LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL+A++  + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKAILEAYLTHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                         DG   LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 --------------DG-YALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ + R+  +I  ELL ++ +    RRT +  G +  +EDED I  ED+++T++  GY+
Sbjct: 457 ILAHQERVDQLIYDELLEIQTKFGDERRTELQVGDVTTLEDEDLIEEEDVIITLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++     E++ ++ Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLHFEGDEKIQTVINV-RGEATDSHDYLFFVTRLGVVKRTAVSEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       +L+ TK G  VRF  + +R+  GR + GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQSVLIATKDGYSVRFVEADVRIM-GRAAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI   +V                          DTE                  
Sbjct: 695 LRENDLVIGADVV-------------------------DDTEN----------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GK+T + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 713 -----------VLVITEKGYGKQTPATEYPIKGRGGKGIKTANITDKN--GVLAGMTIVR 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I++ + +G +IR  V  +    RAT GV +       +V ++ ++      D +  
Sbjct: 760 GDEDIMVTTTQGVMIRFAVASVSQTGRATLGVRLIRLEDGAKVATLAKVEHETTEDVSRE 819

Query: 909 TE 910
           TE
Sbjct: 820 TE 821


>gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 833

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/886 (41%), Positives = 545/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L I I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLIFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 38.1 bits (87), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32]
          Length = 828

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/882 (41%), Positives = 546/882 (61%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   ++   +L+ + LG  ++FP+  +R   GR + GV G
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREI-GRTTRGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V+  D +                                       
Sbjct: 694 IRLNEDDFVVG-AVVISDDGNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366]
 gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366]
          Length = 869

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/896 (40%), Positives = 553/896 (61%), Gaps = 93/896 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           + +E   I  + I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM+ +G+  N
Sbjct: 6   ENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANN 65

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGN+GS+DGD PAA 
Sbjct: 66  KPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAM 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R QK A  +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG  GIAVGMAT
Sbjct: 126 RYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HN+ E ++  +A IDN +I +  LM+ I+ PDFPTGA+I G TG++ A+ TGRG I
Sbjct: 186 NMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEAFETGRGRI 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE  + DRE I+VTEIPYQVNKA M+E+ AELV EK++  I++++DES++ G 
Sbjct: 246 VMRAKAEIE-AAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGI 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL   +P+   L  ++  FV  R EV
Sbjct: 305 RIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHYFVEHRHEV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++        
Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK-------- 416

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q RAIL++ L RLTGL RD I++E N L   I+   
Sbjct: 417 ------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQ 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL   S+ + IIK EL  +K++    RRT IV    DM  ED I  E++V+T+SH GY+
Sbjct: 459 SILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVITISHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P + YR Q RGGKG  G   R+EDF+  L I S H  +LFF+  G  +  +V+ +P 
Sbjct: 519 KRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPE 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G+  ++G+A+ NI+++            P++E                    K+  FI++
Sbjct: 579 GTRLSKGRAIQNIINI------------PKEE--------------------KIKAFIKV 606

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                           L  +   + N I++ TK G   +   +++  ++     G+  I+
Sbjct: 607 KN--------------LKDQEYLENNYIIMCTKKGTIKK---TSLEAYSRPRVNGINAIN 649

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEG-NIS 786
           + +GDQ++  ++   +     E +  ++      R I  + E++  + +  + V G  ++
Sbjct: 650 INEGDQLLEASLTTGSS----EIVMALR----SGRAIRFNEEKVRPMGRTATGVRGVTLA 701

Query: 787 EERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            E+ + + +         IL VSEKG+GKRT   D+R++NR GKG++  +V+  ++ G L
Sbjct: 702 HEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DKTGNL 759

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA+  V D D +++++  G +IR+ V+E+R+  RAT+GV + +   ++ + SV RI
Sbjct: 760 VAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815


>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
 gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
 gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/882 (41%), Positives = 538/882 (60%), Gaps = 89/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+IT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM  MG   N+ Y K A
Sbjct: 6   VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK HPHG++A+YDALARMAQ WS+R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ KDTVDFR N+DGS++EPVVL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ D    +I++P+  ++ LM+II GPDFPT  +ILG  GI  AY+TGRG I +R  +H
Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+       IVVTE+PYQVNKA + E+IAELV++++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F +NM+AL  +G +P   TL  +L+ ++  R+EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR+RAH+L GL IA+ NLD V++ IR S   E+AR  LM               
Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLM--------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              S+++        L+E Q +AIL+L+L RL  L R  I +E   +   I E  DIL++
Sbjct: 411 ---SNFS--------LTERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +I+Q+L  +K++   PRRTRI+  +  ++ DED I    +++T++  GY+KR  
Sbjct: 460 PRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR QRRGG+G  G++ R++D V  L   ++  ++LFF+  G VY+ K   +P  S  
Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE++T+++   E    ++  Y+V AT  G ++R +L ++ Q+  +G
Sbjct: 580 AKGLPLVNLISLEPGEQVTSMLAVRE----FDAEYLVMATVRGKIKRTQLREYSQVRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D +  V       DILLTT  GQ +RF  S +R   GR + GV GI+LA G
Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLADG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM                                             +++EE    
Sbjct: 695 DRVVSM---------------------------------------------DLAEEGAD- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L V+ +G GKRT+  ++ +  R+  G+    +   N++  + A   V ++  
Sbjct: 709 -------LLVVTARGIGKRTALSEYPVKGRATGGV--ITIKLRNDLDEVAAAAVVREHSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  ++  G ++R   +EI    RAT+GV I + A  +RV ++
Sbjct: 760 LTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAAL 801



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V G +S+E   +L    + ++T++++G+ KR     +R   R G+GI+     + + +  
Sbjct: 490 VTGEVSDE---DLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRH 546

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L+     N  D ++  +D+G + ++  +E+  +SR  KG   V + S    E+V S+  +
Sbjct: 547 LLTC---NSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAV 603

Query: 898 RE 899
           RE
Sbjct: 604 RE 605


>gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 839

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/885 (40%), Positives = 540/885 (61%), Gaps = 84/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 11  ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGS+DGD PAA RYTE ++
Sbjct: 71  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSPAAMRYTEAKM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 131 SKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMATNIPTHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     ++DNPD   + LM+++ GPDFPTG V++G++GI+ AY TGRG+IV+R    
Sbjct: 191 GEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVMGKSGIRKAYETGRGTIVVRAKVD 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R+QIVV EIPY VNKA ++E+IA+L R K I  I D+ DE+DR+G R+VI+++
Sbjct: 251 IEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDREGMRIVIDVR 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E VV RRT++
Sbjct: 311 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKEILQYYLEHQENVVRRRTEF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH++ GL IA+ ++DE++ IIR S   E A+ +LM+                
Sbjct: 371 DLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMENYG------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  DIL+ + 
Sbjct: 418 -------------LSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIADYKDILAHQE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  ELL ++ +    RRT +  G + ++EDED I  E ++VT++H GY+KR+P+ 
Sbjct: 465 RINQIIYDELLEIQKKFGDKRRTELQVGDITNIEDEDLIEEESIIVTLTHNGYIKRLPVD 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ +  +DF+  L    TH  +LFF++ G VY  K + +P     A+
Sbjct: 525 EFKSQHRGGRGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGYEIPEYGRSAQ 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L ++  E+I+ ++     E++ ++ ++ F TK G V+R  +++F  I  +G  
Sbjct: 585 GIPIINLLGIDNKEKISAVINVSH-ETNDDDKFLFFTTKQGTVKRTPVTEFKNIRSNGLK 643

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    + ++++ T  G  + F  S +R   GR++ GVRGI L   D 
Sbjct: 644 AINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVRSM-GRSAAGVRGIRLRDDDY 702

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  A                                   L +DS+V             
Sbjct: 703 VIGTA----------------------------------PLDDDSNV------------- 715

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L +SE G+GK+T + ++ I  R G G++  +V+K N  G LV +  V  ++ I+
Sbjct: 716 ------LVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKN--GPLVGLTTVKGDEDIM 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           LV+D G +IR  V  +    R+  GV +        V ++ ++ +
Sbjct: 768 LVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTHVATIAKVEK 812


>gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
 gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
          Length = 828

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/882 (41%), Positives = 547/882 (62%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGASGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR++ GVRG
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRSARGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V++ D +                                       
Sbjct: 694 IRLNENDFVVG-AVVINDDGNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
 gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
          Length = 853

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/896 (40%), Positives = 547/896 (61%), Gaps = 84/896 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ V+++  M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K A
Sbjct: 11  ISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 71  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 131 SKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++DNPD  +  LME++ GPDFPTG +++G++GI+ AY TGRG+I++R    
Sbjct: 191 AEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGRGNIIVRAKVD 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+     +++I+VTE+PY VNKA ++E+IA L R+K I  I D+ DESDR+G R+VI+++
Sbjct: 251 IQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMRIVIDVR 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA VILN LY+ T +Q+ F  NM+A+    P+  +L  IL  ++  +E+V+ RRT++
Sbjct: 311 RDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQEDVIRRRTEF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+ +LM                 
Sbjct: 371 DLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYG------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I +E   L   I +  +IL+S+ 
Sbjct: 418 -------------LSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKD 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +EL+ ++ +    RRT ++ G +L +EDED I  E++ VT++H GY+KR+P +
Sbjct: 465 RINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTT 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P     A+
Sbjct: 525 EFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAK 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N GE+I  ++    D S+ +N Y+ F T  G V+R  + +F  I  +G  
Sbjct: 585 GIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQEFANIRSNGLK 643

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V       +I++ T  G  V F  + +R   GR + GVRGI L   D 
Sbjct: 644 AITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSM-GRTASGVRGIRLRDDDF 702

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI   +                                  LK DS+V             
Sbjct: 703 VIGFDV----------------------------------LKPDSNV------------- 715

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               FI+T  EKG+GK+T + D+ I  R GKGI+  +V++ N  G L  +  V+  + I+
Sbjct: 716 ----FIIT--EKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGLTTVDGQEDIM 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++G +IR  +  +    RAT GV +     D +V ++ ++     VDE  +T+
Sbjct: 768 VMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATD 823


>gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946]
 gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946]
          Length = 805

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/879 (41%), Positives = 522/879 (59%), Gaps = 86/879 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + IT+E++ S++ YA++ I+ RA+PD+RDGLKPV RRIL+   Q G+   +K+ K A
Sbjct: 4   VLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEVM KYHPHG+AAIYD LAR+AQ W+ R  LI+GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  GIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
               + +L D+ K+TV+F PNYDG+ ++P VL A  PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 124 SSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  VA+ID P + LD +M+++ GPDFPTGA  L R GI+ AYA+GRGS+ +R    
Sbjct: 184 SEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGAR-LSRKGIREAYASGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +G R  +V TEIPYQVNKA ++ +IA L + K I +IA LRDESDRQG R+ +ELK
Sbjct: 243 NEDKNG-RAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LN+LY+++ LQ+ F+VN++A+   +P+  +L  +L+ ++  R EVV RRT+Y
Sbjct: 302 RGANPQVVLNKLYKHSRLQASFTVNLLAIVNGEPKVLSLPELLRHYLNHRREVVYRRTQY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L++A+ RAHVL GL IA+ ++DEV+ +IR S +   AR  L+ R               
Sbjct: 362 ELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIAR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RL GL R+ ++ E   L   I     IL    
Sbjct: 407 -----------FALSDIQAQAILDMRLQRLVGLEREKLQEEYRELQETIAYLSAILQDEK 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G++K+ELL +K++    RRT++ E       ED I  E MV+T++  G++KR PL  
Sbjct: 456 RLWGVVKEELLEIKNKYGDARRTQLTEFEEGFNPEDLIEDEPMVITLTSQGFLKRTPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      ++ED    +F+ S H  +LFF++ G VY+EKV+ LP  S QARG
Sbjct: 516 YRAQGRGGVGAQAGKTKEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++++L L +GE +  ++      S     Y VFAT+ G ++R ++ ++  ++ +G IA
Sbjct: 576 THVVSMLPLIEGEEVAALLGV---RSLSEAGYFVFATRQGLIKRTEIQEYQNLSSAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQ 734
           + L   D ++ V        I+L T  GQ +RF +  +R   GR S GV GI    +GDQ
Sbjct: 633 INLLENDALIGVGIAQDGEQIMLATAYGQAIRFDLEDVRA-TGRASQGVTGIRFKDEGDQ 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ I+                                        EG           
Sbjct: 692 VVSLVIL------------------------------------PKGYEGE---------- 705

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V  KG+GKRTS  ++ +  R G+G+         ++G L A+  V  ++ ++
Sbjct: 706 -----VLAVGTKGYGKRTSVAEYPVQGRGGQGV--ITFKTTEKVGKLAALMRVAGDEDLL 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++S +G  IR  V  I +  R T GV I + A+D+ VVS
Sbjct: 759 VLSRRGIAIRTKVGSISLYGRPTSGVKIMNLAEDDEVVS 797


>gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 853

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/896 (40%), Positives = 547/896 (61%), Gaps = 84/896 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ V+++  M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K A
Sbjct: 11  ISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 71  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 131 SKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++DNPD  +  LME++ GPDFPTG +++G++GI+ AY TGRG+I++R    
Sbjct: 191 AEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGRGNIIVRAKVD 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+     +++I+VTE+PY VNKA ++E+IA L R+K I  I D+ DESDR+G R+VI+++
Sbjct: 251 IQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMRIVIDVR 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA VILN LY+ T +Q+ F  NM+A+    P+  +L  IL  ++  +E+V+ RRT++
Sbjct: 311 RDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQEDVIRRRTEF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+ +LM                 
Sbjct: 371 DLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYG------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R+ I +E   L   I +  +IL+S+ 
Sbjct: 418 -------------LSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKD 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II +EL+ ++ +    RRT ++ G +L +EDED I  E++ VT++H GY+KR+P +
Sbjct: 465 RINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTT 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +++Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P     A+
Sbjct: 525 EFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAK 584

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L +N GE+I  ++    D S+ +N Y+ F T  G V+R  + +F  I  +G  
Sbjct: 585 GIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQEFANIRSNGLK 643

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V       ++++ T  G  V F  + +R   GR + GVRGI L   D 
Sbjct: 644 AITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSM-GRTASGVRGIRLRDDDF 702

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI   +                                  LK DS+V             
Sbjct: 703 VIGFDV----------------------------------LKPDSNV------------- 715

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               FI+T  EKG+GK+T + D+ I  R GKGI+  +V++ N  G L  +  V+  + I+
Sbjct: 716 ----FIIT--EKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGLTTVDGQEDIM 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++G +IR  +  +    RAT GV +     D +V ++ ++     VDE  +T+
Sbjct: 768 VMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATD 823


>gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
 gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
          Length = 831

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/889 (41%), Positives = 546/889 (61%), Gaps = 96/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+ +L+ ++E I+GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIYGKVGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I E   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDELNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      + DF+   F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   + +  +L+ +  G  ++FP+  +R   GR++ GVRG
Sbjct: 635 RSYSGIRAIVLDEYDELVSAKIVDKNSKHLLIASHSGTFIKFPLEDVREI-GRSARGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D VI  A+V+  D +                                       
Sbjct: 694 IRLNENDFVIG-AVVISDDHNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R   R GKG+    ++K  + G LV +  
Sbjct: 715 -------------LLSVSENGLGKQTLAESYREQARGGKGVIGMKLNK--KTGNLVGIIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           V+D N  +++++    +IRV + +IR   R   GV +   A  ++VV V
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDAA--DKVVYV 806


>gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
 gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
          Length = 813

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/894 (41%), Positives = 547/894 (61%), Gaps = 85/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++  +   E+
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVVEPEEV 812


>gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994]
 gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994]
          Length = 830

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/885 (40%), Positives = 537/885 (60%), Gaps = 93/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I D +++SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    KY K A
Sbjct: 10  INDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSAGAKYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+G+YHPHG+ ++YDAL RMAQ +++R  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 70  RIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL DL KDTVD   NYDG+ QEP VL  R PN+L+NG  GIAVGMATNIP HN 
Sbjct: 130 TRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMATNIPPHNP 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   V ++DNP+  L  +M+ I+ PDFPTG  I G+ GI +AY TGRG I +R  +H
Sbjct: 190 NEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIYGKKGILDAYETGRGRIRVRAKTH 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK S +++ IV+ E+PYQVNKA ++E IA+LV++K I  I+++RDESDR+G RVVIELK
Sbjct: 250 IEKKS-NKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREGIRVVIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN LY+ T++++ F + M+++   +P  FTL+ +L  F+  R+ V++RRT +
Sbjct: 309 RDAMSEIVLNNLYKSTNMETTFGIIMLSVFNQEPRVFTLLEMLGHFINHRKTVIIRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL  A+ +++ ++++IR S + ETA+  L++                
Sbjct: 369 DLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEE--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         S +Q +AIL++RL RLTGL RD I NEL  +   I+    IL S  
Sbjct: 414 -----------FGFSPIQAQAILDMRLQRLTGLERDKIENELKEILTHIEYLESILRSEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L GIIK+E + + ++ + PR T I +   D+  ED I  E MVVT+SH GY+KRVPL+ 
Sbjct: 463 VLKGIIKEEFVELVEQYNIPRVTDIEDNYDDINIEDLIPNEPMVVTISHRGYIKRVPLAA 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+  V   D+DF+   +  +TH +++F +  G ++  KV+++P GS  A+G
Sbjct: 523 YEKQIRGGKGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEGSRTAKG 582

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L   E+I +I+P   F E +S      +VF T++G V+R  L++F  I  +G
Sbjct: 583 KAVVNLINLEADEKIRSIIPTTDFDEKKS------LVFFTQNGIVKRTALNEFSNIRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ LD  D +++    T+E   L + TK  QC++F I   R   GR++ GVRGI    
Sbjct: 637 VRAIVLDEDDALITAHIATEETKYLFIVTKFAQCIKFEIDKTR-DQGRSTRGVRGIKF-- 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                                                      ++ D  V+ NI      
Sbjct: 694 ------------------------------------------KIEGDVVVDANI------ 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +K  E+ IL VSEKG GKRT++ ++R++NR+G G+ A  ++       +V    V++  
Sbjct: 706 -IKSDEEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGT-TVVGCVMVDETM 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            ++ ++  G +IRV +  I  + R T GV I    K + V S+ R
Sbjct: 764 DLMALTKAGKMIRVDMQTIAKSGRNTSGVYI---VKGDDVASISR 805


>gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630]
 gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 833

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N+ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
 gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
          Length = 859

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/885 (41%), Positives = 543/885 (61%), Gaps = 60/885 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + + KCA
Sbjct: 8   IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  + + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 128 QALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I NP++    L++II GPDFPTG  ILGR+GI +AY +GRGSI +RGV+
Sbjct: 188 LGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQILGRSGIHDAYLSGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   DRE I++T++PYQ NKAA++E+IA+LV +KRI  I+D+RDESDR G RV
Sbjct: 248 EIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDESDRDGMRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L+ F+ FR E + 
Sbjct: 308 VIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLEFRVETIT 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  TA++EL+++          
Sbjct: 368 RRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQ---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS VQ  AIL+++L RLT L  + I  E   L ++I +  DI
Sbjct: 418 ----------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+  II++EL  +K    TPRRT IV    ++ D D I  E  ++ ++  GY+KR
Sbjct: 462 LARRERIEAIIEEELAQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + AQ+R  +G++   ++++D V        H  VLFFS  G VY    +++   S
Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIQAAS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  ++ +L + + E+IT+I+   E     +++++V  T++G +++  LS F  I  
Sbjct: 582 RTARGIPIVQMLPIPKDEKITSIVAVSE---FSDDVFLVMLTRNGYIKKTALSAFSNIRT 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L   D++  V    +E+ I+L T  G  + F     ++   GR + GV+ + L
Sbjct: 639 NGLIAISLGDGDQLRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPLGRATRGVKAMKL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD++ISM I                 ++AQ       TEE      D  +  N +EE 
Sbjct: 699 KKGDELISMDI-----------------LTAQVTAGMAYTEE------DEEILDNENEEL 735

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +E      +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++  VN 
Sbjct: 736 TEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVRAIKFKSDSD--CLASLRVVNA 793

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            D++++VS++G +IR  V+ I + SRA  GV +     ++ + +V
Sbjct: 794 EDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDAIAAV 838


>gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
          Length = 916

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/723 (45%), Positives = 477/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            RSW +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E  DE+E
Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE--DESE 899



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 40/229 (17%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D +           ++ FS+LG   +  + W
Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632
                                        LP G     P  RG   +  + L    +I +
Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690
           ++ F   E+  + L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L   T 
Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840

Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
             E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 888



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + + KV ++       R  A + +++L++GE + ++    EDE
Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDE 895


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/905 (40%), Positives = 556/905 (61%), Gaps = 89/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K D          
Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905
            N+ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  + E E V+   E
Sbjct: 759 GNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817

Query: 906 AESTE 910
            ++TE
Sbjct: 818 EQATE 822


>gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
          Length = 870

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/892 (40%), Positives = 543/892 (60%), Gaps = 90/892 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++ +  N  Y K AR+ 
Sbjct: 43  IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLV 102

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS+DGD  AA RYTE R+ K 
Sbjct: 103 GEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKI 162

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDT+D+R N+D S  EP VL AR PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 163 AEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGEL 222

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG +A+IDN DI +D L+  I+GPDFPTG +I G++GI +AY TGRG + +   + I  
Sbjct: 223 SDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYKTGRGKVRVSAKTEIIT 282

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R+ IV+TE+PYQVNKA ++++I ELV++K IV I+DL D S+ +G R+VI++K+G 
Sbjct: 283 DKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIKKGE 342

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+++LN+L ++T LQ+ F + M+AL    P+   L  IL+ ++  R +V+ R+T + LN
Sbjct: 343 EAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYLEHRYDVITRKTIFDLN 402

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+DRAH+L GL  A+ ++DE++ IIR S     A+  L+ +                  
Sbjct: 403 KAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK------------------ 444

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E+QT AIL++RL RLTGL R++I  E + L + I +  DIL+   R  
Sbjct: 445 --------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLEDILAKDERKY 496

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK+E+L +K +    RRT I     ++  ED I  ED++VT++  GY KR+ L  Y+A
Sbjct: 497 AIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTITKRGYAKRMSLDSYKA 556

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG S     ++D + DLF   T  +++ FS  G VY  KV+ +P  S QARGK +
Sbjct: 557 QKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLI 616

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            NI+ L++ E+I+ I+P   DE   +N  ++F T++G  ++ K+S+F  INR+GKIA+  
Sbjct: 617 GNIIELDENEKISVIIPV--DEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISF 674

Query: 679 -DSRDEI--LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            D  DE+  + + + +++++I ++TK G  VRF    IR   GR + GVR I L   D+V
Sbjct: 675 KDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSM-GRTAAGVRAIKLNSNDEV 733

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S A V++ D + DE       MS                                    
Sbjct: 734 VS-ADVIYTDNNVDE-------MS------------------------------------ 749

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGI-------RATDVSKINEIGALVAVFPVN 848
               +L+V+  G GK+T   ++ I  R GKG+       R+ + S+ + +     + P +
Sbjct: 750 ----VLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEESEHHYVVYSTIIDPSD 805

Query: 849 DND---QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +N    +++ +S  GT+IR+ + ++ +  R +KGV I S    E +VS +R+
Sbjct: 806 ENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKEYLVSADRV 857


>gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51]
          Length = 828

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/882 (41%), Positives = 544/882 (61%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V+ NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV G
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRTTRGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V+  D +                                       
Sbjct: 694 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645]
          Length = 833

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N+ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 812

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/894 (40%), Positives = 534/894 (59%), Gaps = 89/894 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            VSI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++G  + +   K AR+
Sbjct: 4   QVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSARV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L D+ K+TVDFRPNYD +  EP VL  + PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 124 LAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +    + ++D P   ++ LM+ ++GPDFPT   +    G+ +AY TGRG++ +RG   IE
Sbjct: 184 LCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEIE 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +     + IV+ EIP+ +NK++++EKIA LV E++I  +ADLRDESDR+G RVVI+LKRG
Sbjct: 244 ERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKRG 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              D+++N LY+YT L+S F +NM+A+ G +P+   L   L+ F+  R EV++RRT+Y L
Sbjct: 304 TIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYDL 363

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LM                   
Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALM------------------- 404

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                  G   LSE Q +AIL++RL RLT L  + +  E N L  +I+    +L +   L
Sbjct: 405 -------GRFTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVL 457

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVY 556
             +I++E+  ++D   T RRT ++E  LD  D ED I  ED+V+T+S  GY+KR  L  Y
Sbjct: 458 RSVIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDNY 517

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + QRRGGKG +GV   ++DFV D    + H  +L F++ G +++ KV R+P GS  A+G 
Sbjct: 518 QQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGV 577

Query: 617 ALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            + N++ L++ E +T   T+  F ED       Y +F T+ G V+R+  S + +  ++G 
Sbjct: 578 HIANLVQLDKDELVTNVLTVREFAEDR------YFLFVTRRGMVKRSSASLYAKCRKTGL 631

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V    +   I+LTT  G  +RF    +R   GR++ GV+GI+L   D
Sbjct: 632 IAVGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPM-GRSATGVKGIALRGKD 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V++  I+                            E+ TS+                  
Sbjct: 691 RVVACVILAE--------------------------EDTTSM------------------ 706

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 I++VS  GFGKRT +  +R+ +R G G++   V+   + G ++   PV D+D +
Sbjct: 707 ------IMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTP--KTGDVIGAMPVRDDDAL 758

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +L++    ++R+ +N++R   RAT+GV +    +   VV  +RI E E+VD  E
Sbjct: 759 VLLTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGALVVGFDRIDEREVVDGEE 812


>gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
 gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
          Length = 872

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/919 (40%), Positives = 538/919 (58%), Gaps = 138/919 (15%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     
Sbjct: 6   ENNQDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLGVGSRSP 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  AA RY
Sbjct: 66  YMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDGAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+      +L D+ KDTVDF PNYD    EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + V++N +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKL 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK   +++ IVV E+PYQ NKA ++E+IAELV+EK+I  I+++RDESD+ G RV
Sbjct: 246 RAKTHIEKKP-NKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDKDGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK F+  R+ V++
Sbjct: 305 VIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  +AR  L+ +          
Sbjct: 365 RRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL++RL++LTGL R+ +  EL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +IK ELL +K++   PR T IV+   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+GKA++N++ L   E+I  I+P   F E +S      + F TK+G V+R  LS+F  
Sbjct: 579 RTAKGKAVVNLIQLQPDEKIKAIIPTTDFAESKS------LAFFTKNGIVKRTNLSEFKN 632

Query: 668 INRSGKIAMKLDSRDEI------------------LSVETCTQEND-------------- 695
           I   G  A+ LD  DE+                  L VET   E +              
Sbjct: 633 IRSIGVRAINLDENDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSEEN 692

Query: 696 --------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAI 740
                         + + TK G C++F +S +R   GR + GV GI   + GD+V+  A+
Sbjct: 693 DENAAEGSDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAGDEVVGAAV 751

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + + D                                                    Q +
Sbjct: 752 IENND----------------------------------------------------QEV 759

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L++S+KG GKRT++ ++R++NR GKG+    ++  N  G L+ V  V+D   ++ ++  G
Sbjct: 760 LSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDDEQDLMALTSSG 817

Query: 861 TLIRVPVNEIRIASRATKG 879
            +IRV +  IR A R T G
Sbjct: 818 KMIRVDMQSIRKAGRNTSG 836


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/905 (40%), Positives = 557/905 (61%), Gaps = 89/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K D          
Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L ++EKG+GKRT   ++ +  R GKGI+ +++++ N  G L  +  V+
Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  + E E V+   E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817

Query: 906 AESTE 910
            ++TE
Sbjct: 818 EQATE 822


>gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 827

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/888 (41%), Positives = 539/888 (60%), Gaps = 87/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K + K A
Sbjct: 6   IVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YD+L R+ Q++S+R  LI+GQGNFGSVDGD PAA RYTE R+
Sbjct: 66  RVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L DL K TVDF  N+D S +EP VL +  PN+L NG  GIAVGMATNIP  NL
Sbjct: 126 KSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG +A+I NP++++  LM+ +  PDFPTG +I G  G+++AY TGRG +VIR  + 
Sbjct: 186 REVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIYGYEGVRSAYMTGRGKVVIRARAI 245

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E T  + RE IVVTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR G R+VIEL
Sbjct: 246 VEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A V+LN LY++T +Q  F V M+AL    P    L  ++  ++  R E+V+RRT+
Sbjct: 306 KRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMVYYIKHRNEIVLRRTQ 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R              
Sbjct: 366 FDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q++AILE+RL RLTG+ R  I  E   +   I+E   IL S 
Sbjct: 412 ------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFILGSP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR P+S
Sbjct: 460 EKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG +G   + +DFV  +FI STH  +LFF++ G  +  KV+ +P     AR
Sbjct: 520 GYRRQARGGKGVTGAQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAGRAAR 579

Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G+AL NI+ L QGE+I   +     DE      ++V AT +G V++  L DF    ++G 
Sbjct: 580 GRALANIMELQQGEKIRAYINIRNFDEPG----FIVMATTNGIVKKTPLEDFSHPRKNGI 635

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ +D  DE+L       ++ I+L    G  VRFP + IR   GR ++GV+GI+L +G+
Sbjct: 636 AAITIDEHDELLDARLTDGDHQIILAKNSGFVVRFPEAEIRSM-GRTAMGVKGITLDEGE 694

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + ISM                                 +T+ + D++             
Sbjct: 695 KCISM---------------------------------VTTKRFDTA------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V++ GFGKR+   D+R++ R  +G+    +    ++GAL+ +  VND+D +
Sbjct: 709 ------LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKAHEKVGALIGLLDVNDDDDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I+++ +G + R  V++IR+  R T GV +      + + ++ R+ +S+
Sbjct: 761 IIITAQGIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALARVPKSD 808


>gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977]
 gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977]
          Length = 804

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/879 (42%), Positives = 533/879 (60%), Gaps = 87/879 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M Q G+   +K+ K A
Sbjct: 4   VLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+ A+YDA+ R+AQ+W+LR  LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  GVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  N+DG+ +EP VL A +PN+L NG  GIAVGMAT+IP HNL
Sbjct: 124 SPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++   A+ID+P+I LD +M+ + GPDFPTG   L R G+K AY TG+GS+ +R    
Sbjct: 184 GELINALAAMIDDPEITLDGVMQHLPGPDFPTGGR-LNRVGLKRAYETGKGSLRLRARVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G R+ +VVTEIPYQVNKA+++ +IA LVR K++ DI+ LRDESDRQG R+VIELK
Sbjct: 243 TEERGG-RKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+LNQL++ T+LQ+ F++NM+A+   +P    L+ +++A++  R EVVVRRT++
Sbjct: 302 RGANPDVVLNQLFKQTNLQTSFTINMLAIVNGEPRVLPLLAMMRAYLDHRREVVVRRTRF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DRAHVL GL IA+ +LDEV+ +IR S +   A+  LMQR               
Sbjct: 362 DLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ +AIL++RL RLTGL R+ ++ E   L   I     IL+  +
Sbjct: 407 -----------FALSEVQAQAILDMRLQRLTGLEREKLQAEYRELQETIAYLRAILADET 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G++K ELL+++++    RRT I E       ED I  E MV+T++  G++KR PL  
Sbjct: 456 RLWGVVKDELLAIREKFADERRTLITEFAEGFNPEDLIEDEPMVITMTAAGFLKRTPLED 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      +DED  T +F+   H  +LFF++ G VY+EKV+ LP     ARG
Sbjct: 516 YRAQGRGGMGAKAGRTKDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + + L L +GE I  ++      S  +  Y VFAT+ G V++  + D+  +N SG IA
Sbjct: 576 THVKSFLPLEEGEEIKALLSL---RSLTDPGYFVFATRKGVVKKTAIRDYQNLNASGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D+++ V        +++ T+ G+ +RFP+  +R   GR S GVRGI L +GD+V
Sbjct: 633 INLVEGDDLVDVRIAGSGAQVVMATRGGKAIRFPLDEVRA-TGRASQGVRGIRLKEGDEV 691

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S+ IV+  D + D                                              
Sbjct: 692 VSL-IVVPKDWEGD---------------------------------------------- 704

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854
               +L +S  G+GKRT   ++ +  R G+G+      K+NE +G L A+  V+ ++ ++
Sbjct: 705 ----LLAISSHGYGKRTPLEEYPLQGRGGQGV---ITFKLNEKVGHLTALLAVDGDEDLL 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++S  G  IR  V  I   SR T GV + + A  + + S
Sbjct: 758 VLSRGGLAIRTRVRTISQYSRPTSGVKVMNLAAGDEIAS 796



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 98/211 (46%), Gaps = 17/211 (8%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  +  G VK+  +  Y  Q     G   + + + D + D+ I  +   V+  +  G   
Sbjct: 606 VFATRKGVVKKTAIRDY--QNLNASGLIAINLVEGDDLVDVRIAGSGAQVVMATRGG--- 660

Query: 600 KEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             K  R P+   +A G+A   +  + L +G+ + +++  P+D   W    +  ++ HG  
Sbjct: 661 --KAIRFPLDEVRATGRASQGVRGIRLKEGDEVVSLIVVPKD---WEGDLLAISS-HGYG 714

Query: 658 RRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  L ++    R G+  I  KL+ +   + ++     + D+L+ ++ G  +R  +  I 
Sbjct: 715 KRTPLEEYPLQGRGGQGVITFKLNEKVGHLTALLAVDGDEDLLVLSRGGLAIRTRVRTIS 774

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            ++ R + GV+ ++LA GD++ S  ++   D
Sbjct: 775 QYS-RPTSGVKVMNLAAGDEIASAFVIKPHD 804


>gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302]
          Length = 833

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 807

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTK 701
           N  V+  T++G  +R K S++    R GK    A   +    +  + T   + DILL T 
Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            G  +RF + ++    GR ++GVR + +  G +V++MA+V
Sbjct: 769 KGVIIRFNVDSVSQ-TGRATLGVRLMRMEDGAKVVTMAVV 807



 Score = 38.1 bits (87), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30]
          Length = 828

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/882 (41%), Positives = 547/882 (62%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 TKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR I+ S +PE A+  L++R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR++ GVRG
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRSARGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V++ D++                                       
Sbjct: 694 IKLNENDFVVG-AVVINDDSNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IR+ + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRISIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
          Length = 858

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/904 (40%), Positives = 550/904 (60%), Gaps = 87/904 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ +E+    I S  + ++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MAEEEQTNSRIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K++ K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGDP 
Sbjct: 61  TPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+
Sbjct: 181 MATNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  + IE     +E I+VTE+PY VNKA ++E+IAEL R+KRI  I  + DESD+
Sbjct: 241 GVVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+ IE++R  SA V+LN LY+ T +Q+ FS NM+A+   +P+  +L  +L A++  +
Sbjct: 301 EGNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGRPKLLSLKDMLVAYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRT++ L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+++LM       
Sbjct: 361 QKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLM------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                +D                LS+ Q++AIL++RL RLTGL RD I  E   L   I 
Sbjct: 414 -----VDYA--------------LSDKQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL V+ +    RRT +  G +  +EDED I  ED++V+++H
Sbjct: 455 DFQDILAKPERIDEIIYTELLEVQSKYGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+  S +RAQ RGG+G  G+ + D+DF+ +L   STH ++LFF++ G VYK K +
Sbjct: 515 AGYIKRMLQSEFRAQNRGGRGIQGMGVNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L +  GE I T++    D S  ++ Y+ F T+ G V+R  +++
Sbjct: 575 EVPEYGRTAKGIPVVNLLGIESGESIQTVINVRGDASESSD-YLFFTTRQGVVKRTPVNE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I   G  A+ L   DE+++V     + +I++ T  G  V F   A+R   GR++ GV
Sbjct: 634 FGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIGTHGGYAVSFNSEAVRSM-GRSAAGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+                                              L+ D  V G 
Sbjct: 693 RGIT----------------------------------------------LRPDDYVVG- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++ +    +L ++EKG+GK+T    + I  R GKGI+   V++ N  G L  +
Sbjct: 706 ------AQVLIDNGHVLIITEKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKN--GPLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESE 901
             V+ ++ I+L ++KG +IR  V+ I    RAT+GV +     D  V +   VE +   E
Sbjct: 758 KVVDGSEDIMLTTNKGVMIRFTVDSISETGRATQGVRVIRLDDDSAVATFAKVEHVVAEE 817

Query: 902 IVDE 905
           + DE
Sbjct: 818 VDDE 821


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/905 (40%), Positives = 556/905 (61%), Gaps = 89/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K D          
Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  + E E V+   E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817

Query: 906 AESTE 910
            ++TE
Sbjct: 818 EQATE 822


>gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 911

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/715 (46%), Positives = 477/715 (66%), Gaps = 22/715 (3%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++  K   +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN
Sbjct: 6   DQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWN 65

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +S+R +L++GQGNFGSVDGD  AA 
Sbjct: 66  SAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAAAM 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K AH +L D+ +DTV+F  NYDGS +EP+VL  R+P +LVNG  GIAVGMAT
Sbjct: 126 RYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNL + + GC+ ++  P+ D++ L++II+ PDFPTGA I G TGI+  Y TGRG +
Sbjct: 186 SIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGATIYGLTGIRAGYQTGRGRV 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  +HIE    + E I+V EIPYQVNK+ ++EKI EL+REK +  IA+LRDESD+ G 
Sbjct: 246 VIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELRDESDKDGT 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR  +A+VILNQLY+ T LQ  FS+NMVAL   +P    L  IL  F+  R EV
Sbjct: 306 RIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVDGQPRLLNLKQILSEFLRHRREV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR   H+  G A+A++N+DE++ +I+ S + ++AR  L+ R+W +  + 
Sbjct: 366 VTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSRAWQSDLVS 425

Query: 429 DLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++++  D             +  + SDG  +LS+ Q RAIL + L  LTGL +D+I  E 
Sbjct: 426 EMLNRSDLDLTMARPEWLPENRGLQSDG-YWLSDEQARAILRMSLRNLTGLDQDEIIKEY 484

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVRE 536
             L   I + LDIL+   R+  II  EL++++ +    RR+ I   G  D+ DED I   
Sbjct: 485 KELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIADEDLIPPR 544

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVVT++H GY+K  P S Y+AQ+RGG+G+     +DEDF+  LF+ +TH  ++ F++LG
Sbjct: 545 EMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 604

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATK 653
             +  KV+RLP G  Q+RG+ + N++ L + E+++ I+P   FPEDE      YV FAT 
Sbjct: 605 RCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRDFPEDE------YVFFATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            G V++ +LS F  ++  G  A+ L   D ++ V   +  +DI+L + LG+ +RF
Sbjct: 659 LGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRF 713



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT ++ G+GKRT   ++    + G+GI A D  + N  G LV    V+ +D ++L++  
Sbjct: 789 VLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERN--GELVGAALVSPSDDLMLITSG 846

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G LIR  V ++R   RA +GV + +  +   +VS+ER+ E    +EAE  E
Sbjct: 847 GVLIRTKVEQVRETGRAAQGVRLINLDEGTTLVSIERVAEENSDEEAELVE 897



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 37/245 (15%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ++ V   + LG VK+V LS ++      KG   + ++D D +  +   S  + ++ FS+L
Sbjct: 650 DEYVFFATALGVVKKVQLSAFK--NVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNL 707

Query: 596 GFVYKEKVWRLPIGSPQARGKAL---------------INILSLNQGER-------ITTI 633
           G   +   +  P  +     + +                N+L+ N+G R           
Sbjct: 708 GKAIRFNEFYNPTSNDDDESEDVSGSLNDDSDDENSDEFNLLT-NKGIRPSGRGSGGLRG 766

Query: 634 MPFPED--------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD--- 682
           M  PE+            ++L V+ AT++G  +R  + ++ +  + G+  + +D+ +   
Sbjct: 767 MRLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERNG 826

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++     +  +D++L T  G  +R  +  +R   GR + GVR I+L +G  ++S+  V 
Sbjct: 827 ELVGAALVSPSDDLMLITSGGVLIRTKVEQVRE-TGRAAQGVRLINLDEGTTLVSIERVA 885

Query: 743 HADAD 747
             ++D
Sbjct: 886 EENSD 890


>gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
 gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
          Length = 816

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 38.1 bits (87), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 841

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 541/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA VILN LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV
Sbjct: 303 IVIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++  NKA  RAH+L GL IA+ ++DE++ +IR S + + A+  +M+R         
Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L II+ EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV  S +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P 
Sbjct: 517 KRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  ERI  I+            Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRAAKGIPVINLLGIDSSERIEAII--SASGGPQEGRYLFFTTRLGVVKRTSVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E+ +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+  A+                        I+ D+E                  
Sbjct: 694 LRDGDYVVGAAV------------------------ITEDSE------------------ 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+
Sbjct: 712 -----------VLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + I+++++KG LIR  V  +    RAT GV +     + +VV++
Sbjct: 759 GEEDIMVITNKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTM 804



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 19/204 (9%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYK 600
           + LG VKR  ++ +   R    G   + +R+ D + ++        V+  +  G+   +K
Sbjct: 618 TRLGVVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 675

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           E + R        R  A +  + L  G+ +       ED        V+  T++G  +R 
Sbjct: 676 EALVR-----DMGRTAAGVRGIRLRDGDYVVGAAVITEDSE------VLVITENGYGKRT 724

Query: 661 KLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           K S++    R GK    A        +  + T + E DI++ T  G  +RF ++ +    
Sbjct: 725 KGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITNKGVLIRFNVATVSQ-T 783

Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741
           GR ++GVR + +    +V++MA V
Sbjct: 784 GRATLGVRLMKMENNAKVVTMATV 807



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 10/157 (6%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+V+  +H GY      ++ R   R   G  G+ +RD D+V    +++  + VL  +  
Sbjct: 659 EDVVIIGTHDGYSVTFKEALVRDMGRTAAGVRGIRLRDGDYVVGAAVITEDSEVLVITEN 718

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+  + K    PI     +G    NI + N      T +   ED        ++  T  G
Sbjct: 719 GYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEED--------IMVITNKG 770

Query: 656 NVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETC 690
            + R  ++   Q  R+  G   MK+++  +++++ T 
Sbjct: 771 VLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMATV 807


>gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
 gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
          Length = 874

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/927 (40%), Positives = 545/927 (58%), Gaps = 137/927 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E++++ +++    I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENLLNQNQD----IQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+
Sbjct: 57  NNLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+      +L D+ KDTVDF PNYD    EP VL +R PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E++DG + V++N +  L+ +ME I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIEK   +++ IVV E+PYQ NKA ++E+IAELV+EK+I  I+++R
Sbjct: 237 YRTGRGRVKLRAKTHIEKKP-NKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK 
Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  +AR  L+ +
Sbjct: 356 FLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q  AIL++RL++LTGL R+ +  EL  L
Sbjct: 416 --------------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK ELL +K++   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 MAEIARLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  +   S +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFAQSKS---LAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEI------------------LSVETCTQE--------- 693
            LS+F  I   G  A+ LD  DE+                  L VET   E         
Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEGEEEPINLIGELGVETEINEIEAIEAQID 686

Query: 694 ----ND----------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732
               ND                + + TK G C++F +S +R   GR + GV GI   + G
Sbjct: 687 EENSNDGDKNGERTESDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAG 745

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+  A++                                             E   QE
Sbjct: 746 DEVVGAAVI---------------------------------------------ENNAQE 760

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L+VS+KG GKRT++ ++R++NR GKG+    ++  N  G L+ V  V++   
Sbjct: 761 -------VLSVSQKGIGKRTTADEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDEEQD 811

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG 879
           ++ ++  G +IRV +  IR A R T G
Sbjct: 812 LMALTSSGKMIRVDMQSIRKAGRNTSG 838


>gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20]
          Length = 826

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/880 (41%), Positives = 546/880 (62%), Gaps = 93/880 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+ KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL+  E+I   +   +  DE S     + F TK G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLDPDEKIMATLSTKDFSDERS-----LAFFTKKGVVKRTNLSEF-DSN 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +G  A+ LD  DE++S +   +    +L+ + LG  ++F +  +R   GR++ GV GI 
Sbjct: 635 YNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREI-GRSTRGVIGIK 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+V++ D++                                         
Sbjct: 694 LNENDFVVG-AVVINDDSNK---------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV+V  V+
Sbjct: 713 -----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVSVISVD 759

Query: 849 D-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 DENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 799



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L R+ V +I  ASR   G   V + S   DE++++
Sbjct: 555 HDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLDPDEKIMA 601


>gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
 gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 871

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/889 (39%), Positives = 543/889 (61%), Gaps = 89/889 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +G+     + K ARI 
Sbjct: 10  INIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K 
Sbjct: 70  GEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG  GIAVGMATN+P HNL EV
Sbjct: 130 SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPHNLTEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++G +A ++N DI++D LM+ I+ PDFPTG +I G  G++ A+ TGRG IV+R     E+
Sbjct: 190 INGTLAYLENNDIEIDELMQHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMRAKVGFEE 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G RE I+V+EIPYQVNKA M+++ A+LV EK+I  I+++RDESDR G R+V  LKR A
Sbjct: 250 VDG-RECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVYILKRDA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  FV  R +VVVRRTK+ L 
Sbjct: 309 TPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIHYFVEHRHDVVVRRTKFDLR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +RAH+L GL IA  N+DEV+ +IR S N + A+ +L++R                  
Sbjct: 369 KAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIER------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS++Q+RAI+E+RL +LTGL +D +R E   L   I+    +L+  +   
Sbjct: 411 --------FKLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLADVNLRT 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +IK+EL  ++ +    RR++I     D+  ED I  E++V+T+SH GY+KR  L+ Y+ 
Sbjct: 463 ALIKEELEDMRAKYGDERRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNLNEYKT 522

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG G+     RD DF+  +++ + H  ++FF+  G  Y  +V+ +P GS  A+G+AL
Sbjct: 523 QNRGGVGQKSAGTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTAKGRAL 582

Query: 619 INILSLNQGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
            N++++   +++   +   +    D ++ +NL +V  TK G V++  L  + +   +G  
Sbjct: 583 QNLINIESDDKVKAFICTQDLKDKDYTTSHNLIMV--TKKGMVKKTSLDKYSKPRVNGVA 640

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           A+ +   DE+LS +     + I++  K G+ +RF  +  R   GR + GVRGI L  + D
Sbjct: 641 AITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRFEETKTRPM-GRTASGVRGIRLKDESD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI +  V                                   ND + E           
Sbjct: 700 EVIGLVSV-----------------------------------NDMNSE----------- 713

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 IL V+E G+GKR+S  ++RI+NR GKG++  ++++  + G L+++  V D D +
Sbjct: 714 ------ILVVAENGYGKRSSLDEYRITNRGGKGVKTLNITE--KTGQLISINTVTDADDL 765

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ + ++
Sbjct: 766 MIINKSGLTIRMAVEDLRVMGRATQGVKLINLKGKDSIAAVTKVMKDDV 814


>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
 gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
          Length = 868

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/885 (40%), Positives = 536/885 (60%), Gaps = 93/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K Y K A
Sbjct: 14  VIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYENGIFPDKAYRKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              G V+G+YHPHG+A++YDAL RMAQD+SLR  L++G GNFGSVDGDPPAA RYTE ++
Sbjct: 74  DTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TV+F  NYD   +EP+VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 SKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D    +IDNPD +L  +M  I+GPDFPT  +I+G++GI+ AYATGRG I +R  + 
Sbjct: 194 REVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIMGQSGIRAAYATGRGKIQVRARAE 253

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +  R +IVVTE+PYQVNKA ++E IA  V++KRI  I+ LRDES+R+G R+VIELK
Sbjct: 254 IEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRDESNREGMRIVIELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           R A+  +ILN+LY +T +Q  F V N+  +NG  P+  TL  +L+ ++ F+ EV+ +RT+
Sbjct: 314 RDANPQIILNKLYSFTQMQETFGVINLALVNGV-PKVMTLKEMLEHYIEFQSEVIRKRTE 372

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R H+L GL IA+  +DEV++ IR S     ++  L++R              
Sbjct: 373 YDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER-------------- 418

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E+Q  AI+++RL +L+GL R  I  EL  L  +IKE   IL   
Sbjct: 419 ------------FGLDELQADAIVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDD 466

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +L I+++EL +++D+    RRT I+    +++ ED I  ED VVT++H GY+KR P  
Sbjct: 467 ALILVIVREELAAIRDKFGDERRTEILAVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTD 526

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +Y+ Q+RGG+G +G+  R+EDF  +LFI STH +VLF ++ G +YK K + +P G   ++
Sbjct: 527 IYKTQKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSK 586

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G  ++N+L +   E++T+   I  F  D+      Y+V  TK G ++R  L  +  + ++
Sbjct: 587 GTNIVNLLPIEGDEKVTSMIRITDFDPDQ------YLVMVTKSGMIKRTVLDAYKNVRKN 640

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+  V      + +++ T+ G  +RF  +  R  + R++ GVR I L  
Sbjct: 641 GLIAISLLEGDELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLS-RSAKGVRAIKLRG 699

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ MA                       RL  G T                      
Sbjct: 700 DDEVVGMA-----------------------RLREGAT---------------------- 714

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++TV+++G G+RT   D+RI  R G G     VS  +E G +VAV  V+++D
Sbjct: 715 --------VMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVS--DEKGHVVAVKVVDEDD 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            +IL+S+ G +IR+ V+++ + SR   GV +     D RVV+  R
Sbjct: 765 DLILISNDGVIIRIRVSDVNVMSRYAGGVKVMRVQGDARVVTFAR 809


>gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 823

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/889 (40%), Positives = 535/889 (60%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P+     ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I                                  LK +  V    
Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806


>gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
 gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
          Length = 833

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTSVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012]
          Length = 828

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 38.1 bits (87), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/905 (40%), Positives = 554/905 (61%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                        ++GN    
Sbjct: 694 LREEDYVVGAAL----------------------------------------MKGN---- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
 gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
          Length = 821

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/890 (40%), Positives = 535/890 (60%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY TG+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEN---ADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   +                                  L  D  V   
Sbjct: 691 RGINLRENDYVVGSGV----------------------------------LGKDDQV--- 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                           L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 714 ----------------LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             V+    I++++  G +IR    ++    R+T GV +     D +V S+
Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASL 805


>gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/723 (45%), Positives = 476/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++++DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            RSW +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E   +   TE
Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 40/240 (16%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D +           ++ FS+LG   +  + W
Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632
                                        LP G     P  RG   +  + L    +I +
Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690
           ++ FP  E+  + L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L   T 
Sbjct: 782 LITFPA-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840

Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+  V   + + D
Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            + + KV ++       R  A + +++L++GE + ++    E+E+
Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896


>gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
 gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
          Length = 829

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/833 (43%), Positives = 514/833 (61%), Gaps = 84/833 (10%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA
Sbjct: 4   DKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMA
Sbjct: 64  MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGS
Sbjct: 124 TNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R 
Sbjct: 184 IQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT 243

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++
Sbjct: 244 GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQK 303

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR      
Sbjct: 304 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR------ 357

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q +AIL++RL RLTGL RD I  E N L   I E
Sbjct: 358 --------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISE 397

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
              IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH 
Sbjct: 398 LEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHN 457

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + 
Sbjct: 458 NYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYE 517

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F
Sbjct: 518 VPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNF 575

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+
Sbjct: 576 SRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVK 634

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD+V+ +  V HA++  DE                                   
Sbjct: 635 GITLREGDEVVGLD-VAHANS-VDE----------------------------------- 657

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V + 
Sbjct: 658 --------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCIT 701

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V   + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 702 TVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 754


>gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 838

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
 gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
          Length = 841

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/900 (39%), Positives = 543/900 (60%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +  D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID+      +  ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 189 REVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K+I  I DL D+S R+G R+
Sbjct: 249 RAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQSSREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  + +VILNQLY++T LQ  F V M+AL G +P+   L+ +L  ++  +E+VV 
Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVGNQPKVMNLLEMLNYYLKHQEDVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA++RAH+L GL IA+ N+DEV++IIR S N + A++EL++R          
Sbjct: 369 RRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ +AI+++RL  LTGL R+ I  E   L  +I+E   I
Sbjct: 419 ----------------FGLSEVQAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEFKAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +  LLG+IK+E+L + ++    RRTRI     D+  ED I RE++V+T++ LGY+KR
Sbjct: 463 LADKKLLLGVIKKEILVISEKYGDDRRTRIGYDEFDISMEDLIPRENVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  +++Q RGGKG  G+   ++D++ +LF+ ++H  ++FF++ G VY+ K + +P   
Sbjct: 523 MTMDTFKSQNRGGKGIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG A+IN+L L   E+IT I+P  E E      Y+  AT+ G V++  + D+  + +
Sbjct: 583 RTARGTAIINLLQLMPEEKITAIIPLREYEEGK---YLFMATEKGLVKKTPIQDYANVRK 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D ++ V+      DILL T+ G C+RF  + +R   GR S+GVRG++L 
Sbjct: 640 TGLAAIALREDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRS-TGRVSMGVRGMNLT 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI M     A    D  I   K M  +                      N+ E   
Sbjct: 699 DNDVVIGMQT---ASQGTDLLIVSEKGMGKRT---------------------NMDE--- 731

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                      T   +G GK    Y  +I+ ++G                +V +  V+++
Sbjct: 732 ----------FTRQNRG-GKGVKCY--KITEKTGN---------------VVGMKAVDED 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +I++++ +G +IR+  ++I +  R T GV + +  + ++V SV ++R++    + E  E
Sbjct: 764 SEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEKDKVASVAKVRKASAEIDGEQVE 823


>gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis]
 gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76]
 gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137]
 gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000]
 gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017]
 gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027]
 gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141]
 gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244]
 gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031]
 gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043]
 gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312]
 gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342]
 gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346]
 gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B]
 gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A]
 gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62]
          Length = 833

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 823

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/889 (39%), Positives = 535/889 (60%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRI++GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P+     ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I                                  LK +  V    
Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806


>gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6]
          Length = 859

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/888 (40%), Positives = 534/888 (60%), Gaps = 87/888 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + +  Y K A   G 
Sbjct: 20  VKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + A 
Sbjct: 80  VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+++ PN+D + +EP VL  R+PN+LVNG  GIAVGMATNIP HNL EV+D
Sbjct: 140 EMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           GCVA I++PDIDL  LME I+GPDFPT  +I+GR+GI+ AYATGRG I +RG + IE+T 
Sbjct: 200 GCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 259

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R QI++TEIPY VNKA ++E +AELV++KRI  I  L DE++R+G R+V+++++ A+A
Sbjct: 260 NGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLNDETNRKGMRIVVDIRKDANA 319

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            VILNQLY+YT LQ    V M+A++   P+  TL  +++ +V F++EVV RRT+Y L KA
Sbjct: 320 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKA 379

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++RAH+L GL  A   +DE++  IR         +  +   +   D              
Sbjct: 380 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 425

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                       Q  AI++L+L RL GL    I  EL+ L  +I++  DIL++ +R+L I
Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELSGLQAKIEDWEDILANDARVLEI 474

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K ELL +K      RRT I     +++ ED I  E  V T++  GY+KR   + Y+AQ+
Sbjct: 475 VKNELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQK 534

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G SG+  ++ED V ++F+ STH  VLF +  G +++ K + +  GS  ++G  +IN
Sbjct: 535 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGSNIIN 594

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE++T ++ +P+DE +    +V   TK G ++R  L  +  I ++G I + L+ 
Sbjct: 595 LLQLAEGEKVTNMLCYPKDEDNKGG-FVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNE 653

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +      T  + +++ T+ GQ +RF  +  R   GR+  GVR I LA+GD+V+ + I
Sbjct: 654 GDALAWTRLTTGNDMLIVATRNGQAIRFNEADARPM-GRSGHGVRAIKLAEGDEVVGVCI 712

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                            C+E       +
Sbjct: 713 -------------------------------------------------CRE----GGTV 719

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G G+R+    +RI+ R GKGIR  D SK      + AV  V+D D ++L S +G
Sbjct: 720 LTVTENGKGRRSDIDTYRITARGGKGIRNYDASK----DKVAAVKIVDDIDDVLLSSQEG 775

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +IR+  NEI + SR   GV +    ++++V+ + R       DEA++
Sbjct: 776 IIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHD---DEAQT 820



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 42/243 (17%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT--------DLFIVSTHTSV 589
            V  V+  G +KR PL  Y   R+   G  G+ + + D +         D+ IV+T    
Sbjct: 620 FVTMVTKQGLIKRTPLEQYANIRK--TGLIGIALNEGDALAWTRLTTGNDMLIVATR--- 674

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
              +     + E   R     P  R    +  + L +G+ +  +    E  +      V+
Sbjct: 675 ---NGQAIRFNEADAR-----PMGRSGHGVRAIKLAEGDEVVGVCICREGGT------VL 720

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRF 708
             T++G  RR+ +  +    R GK     D S+D++ +V+     +D+LL+++ G  +R 
Sbjct: 721 TVTENGKGRRSDIDTYRITARGGKGIRNYDASKDKVAAVKIVDDIDDVLLSSQEGIIIRL 780

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + I V + R   GVR + L + D+V+ +A   H D              AQ   I  D
Sbjct: 781 HANEIPVQS-RYGSGVRVMRLGENDKVMVLARTDHDD-------------EAQTESIEAD 826

Query: 769 TEE 771
           TE+
Sbjct: 827 TED 829


>gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716]
          Length = 836

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/903 (40%), Positives = 552/903 (61%), Gaps = 86/903 (9%)

Query: 10  EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           E+E  G IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   EQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 63  KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GSI
Sbjct: 183 NIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G 
Sbjct: 243 IVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM          
Sbjct: 363 VRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 DD S          LS+ Q +AIL+LRL RLTGL R+ I +E   L   I +  
Sbjct: 413 ------DDYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+ + R+  II  EL+ ++++    RRT +  G + ++EDED I  ED++VT++H GY
Sbjct: 457 DILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +P
Sbjct: 517 VKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F  
Sbjct: 577 EYGRAAQGIPIINLLDVDGKEKVTAVINIAQREDDLQK-DLFFVTRQGTVKRTPVTEFKN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG 
Sbjct: 636 IRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGA 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD +I  A                                   L  D  V      
Sbjct: 695 RLRDGDYLIGAA----------------------------------PLNEDDQV------ 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  V
Sbjct: 715 -------------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +E+   D  
Sbjct: 760 QGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPT 819

Query: 907 EST 909
           E++
Sbjct: 820 EAS 822


>gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 860

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/878 (40%), Positives = 524/878 (59%), Gaps = 86/878 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G  +N    KCA
Sbjct: 8   IIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+++GKYHPHG++++Y+ L R+AQ W++R  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 68  RAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  +TVDF+ N+DG F+EP VL  R PN+L+NG  GIAVGMATN+  HNL
Sbjct: 128 NQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNL 187

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            E ++ C+A ID   +I +D LM+ ++ PDFPTG VI G  G+K A+ TGRG IVIRG +
Sbjct: 188 TETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRIVIRGKA 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G  E+IV+ EIPYQV K+ M+ KIA+LV EK+I  I+D+ DES  +G R+VI++
Sbjct: 248 DIEEYHG-HERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDI 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A V+LN LY+Y+ L+S FSVN +AL   +P    L  ++  FV  R +VV RR +
Sbjct: 307 KKDANAGVVLNYLYKYSDLESYFSVNNIALVHGRPRLLNLKDLIGHFVDHRHDVVTRRAQ 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++R H+L GL IAV ++DEV+RIIR S     A   LM+ ++N           
Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME-AFN----------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q RAI+++RL +LT L  D +++E N L   I      LS  
Sbjct: 415 --------------LSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDI 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +  + +I++E   + D+    RR+ IV    D+  ED    EDMV+T+SHLGY+KR PLS
Sbjct: 461 NMRMELIQEECREIIDKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLS 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R Q RGG G  G   RDEDFV  ++  + H +++ F++ G VY  +V+ +P GS  ++
Sbjct: 521 EFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSK 580

Query: 615 GKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+ + N+L L++  R+T  +   +   D+   N  Y+VFAT+ G +++  L+ +    ++
Sbjct: 581 GRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKT 640

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
           G  A+ L   D+++SV       +I L  + G+CVRF    +R   GR + GVRGI L  
Sbjct: 641 GVRAINLRGDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVRGIRLDD 699

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M +                                                 
Sbjct: 700 DPNDKVVGMVV------------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              LK  ++ IL +SEKG+GKR+   D+RI+ R  KG++  +V+  ++ G L+ +  V D
Sbjct: 711 -HRLKNSDETILVISEKGYGKRSLIDDYRITKRGAKGVKTINVT--DKTGQLIDIRAVED 767

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +D I++++  G  IR+ + ++R+  RAT+GV +    K
Sbjct: 768 DDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNK 805


>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 827

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/882 (40%), Positives = 531/882 (60%), Gaps = 89/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ +YL YA++VI+ RA+PD RDGLKPV RRIL+ M + G+  N +Y KCA
Sbjct: 6   VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+A++YDAL R+AQ W++R  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 66  GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  LL D+ +DTV+F PN+DG +QEP+VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ DG   ++DNPD  ++ L++ I GPDFPTG  ILG  GI +AY++GRG I+IR  +H
Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGTEGIISAYSSGRGRILIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA ++E+IAELV++KRI  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN L++YTS+Q+ F  NM+AL  +G +P   +L   L+ ++  R+ V+ RRT
Sbjct: 306 QDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+  LDEV+  IR S   ETAR  LM+              
Sbjct: 366 EHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMK-------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q++AILE++L RL GL R  I +E   +   I +  DILS 
Sbjct: 412 ------------NFKLSELQSQAILEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  IIK ++  +K++    RR+RI+ +   D+  ED I   +++VTV+  GY+K++P
Sbjct: 460 PERVFKIIKDDVAELKEKYGDVRRSRIIADATGDISTEDLIPDMNVLVTVTDRGYIKKLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR Q RGG+G  G+  +++D V  L + +T   +LFF++ G VY+ KV  +P  S  
Sbjct: 520 GDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE +T+++  P+ +   +  Y+V  T  G ++R KLS++  +  +G
Sbjct: 580 AKGLPLVNLISLEPGELVTSLIAVPDFD---DGEYLVMTTVKGRIKRTKLSEYSSVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD+ DE+  V+T   + DIL+TT+ GQ +RF  + +R   GR + GV GI ++  
Sbjct: 637 LIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRPM-GRPASGVIGIKMSAK 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQV+ M +V                                  + DS             
Sbjct: 696 DQVVGMDLV----------------------------------RPDSQ------------ 709

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L ++  G GKRT   D+ +  R+ +G+      ++     + A   + D+D 
Sbjct: 710 -------LLVITSHGMGKRTDLEDYPVKGRATQGVITM---RLKPGDIIAAALVLTDSDI 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  ++  G ++R   ++I    R T+GV + +  K + V +V
Sbjct: 760 VTTITRNGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAV 801



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 113/264 (42%), Gaps = 17/264 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +V  T  G +++     +   NR G+    M     D +  +  C   ND+L  T  G+ 
Sbjct: 506 LVTVTDRGYIKKLPGDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKV 565

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +  +  +   A R + G   V  ISL  G+ V S+  V     D+D+   Y+   + + 
Sbjct: 566 YQLKVHEVP-DASRTAKGLPLVNLISLEPGELVTSLIAV----PDFDDG-EYLVMTTVKG 619

Query: 763 RLISGDTEEITSLKNDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           R+      E +S++++  +   +    E R  +    ++ IL  ++ G   R S  + R 
Sbjct: 620 RIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRP 679

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R   G+    +S  +++  +  V P   + Q+++++  G   R  + +  +  RAT+G
Sbjct: 680 MGRPASGVIGIKMSAKDQVVGMDLVRP---DSQLLVITSHGMGKRTDLEDYPVKGRATQG 736

Query: 880 VVIFSTAKDERVVSVERIRESEIV 903
           V+       + + +   + +S+IV
Sbjct: 737 VITMRLKPGDIIAAALVLTDSDIV 760


>gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 836

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/903 (41%), Positives = 550/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+                                    TS  +DS           
Sbjct: 699 EGDYVVG-----------------------------------TSRIDDS----------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   V+ + E E VD  E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 823

Query: 908 STE 910
            T+
Sbjct: 824 LTD 826


>gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 823

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P+     ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I                                  LK +  V    
Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806


>gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341]
          Length = 833

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSTEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       ST K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSTEKIQAIISVE 605


>gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 820

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/890 (40%), Positives = 535/890 (60%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY TG+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEN---ADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   +                                  L  D  V   
Sbjct: 691 RGINLRENDYVVGSGV----------------------------------LGKDDQV--- 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                           L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 714 ----------------LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             V+    I++++  G +IR    ++    R+T GV +     D +V S+
Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASL 805


>gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 857

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/894 (39%), Positives = 538/894 (60%), Gaps = 89/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++     ++I  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++   +N+
Sbjct: 3   EAQDGQHPQINIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++A+YDAL R+AQ++S+R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A   L DL K+TVDFRPNYD + QEP V+  + PN+L+NG  GIAVGMATN
Sbjct: 123 YTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+ D    ++DNP   +D LME ++GPDFPT   +    G+ +AY TGRG++ 
Sbjct: 183 IPPHNLGELCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGKGLYDAYHTGRGTVK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+     + +V+ EIP+ +NK++++EKIA LV +++I  IADLRDESDR+G R
Sbjct: 243 MRGRVEIEERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKRG   D+++N LY++T L+S F +NM+A+   +P   TL   L  FV  R EVV
Sbjct: 303 IVIDLKRGVIPDIVVNALYKFTPLESSFGINMLAVVDNRPVLLTLKSALSCFVDHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT+Y L KA  RAH+L GL IA+ ++D+VV +IR S NPE AR+ LM           
Sbjct: 363 IRRTRYDLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLM----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q RAIL++RL RLTGL R+++  E   L  +I+    
Sbjct: 412 ---------------ATFELSEIQARAILDMRLQRLTGLQREELLAEYKDLLQKIEFYKS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L +   L   +K+E+  +++   TPRRT ++ E L  ++ ED I  +++V+T+S  GY+
Sbjct: 457 VLDNSEVLRSEMKREIREIRETFVTPRRTEVLTEALGGIDIEDLIPDDEVVITLSRRGYM 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+ Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P 
Sbjct: 517 KRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           GS  A+G  + N+L L +GE +TT++    F ED+      Y +F T+ G V+R+  S +
Sbjct: 577 GSRTAKGVHINNLLPLEEGEWVTTVLALREFAEDK------YFLFVTRRGMVKRSSASLY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +  ++G +A+ L   DE++ V    ++N I+L T  G  +RF    IR   GR + GV+
Sbjct: 631 ARCRKTGLMAVGLREDDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPM-GRVATGVK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L + D V++  +VL                         D ++ T            
Sbjct: 690 GIALRRQDSVVA-GVVLK------------------------DVDQTTE----------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I+++S  G+GKRT    +R+ +R GKGI    V+   + G +V   
Sbjct: 714 --------------IMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTA--KTGPVVGAM 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           PV DND +IL++    ++R+ V+E+R   RAT GV++    +  RVV  +R+ E
Sbjct: 758 PVRDNDGLILLTSANKIVRIGVDEVRSKGRATMGVMLVRLDEGARVVGFDRVDE 811


>gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147]
          Length = 836

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/903 (41%), Positives = 550/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+                                    TS  +DS           
Sbjct: 699 EGDYVVG-----------------------------------TSRIDDS----------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   V+ + E E VD  E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 823

Query: 908 STE 910
            T+
Sbjct: 824 LTD 826


>gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d]
          Length = 828

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/882 (41%), Positives = 547/882 (62%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL+  E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLDPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   ++   +L+ + LG  ++F +  +R   GR + GV G
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREI-GRTTRGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V++ D++                                       
Sbjct: 694 IKLNENDFVVG-AVVINDDSNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV+V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S   DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLDPDEKIMA 601


>gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/723 (45%), Positives = 476/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            RSW +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E   +   TE
Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 40/240 (16%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D +           ++ FS+LG   +  + W
Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632
                                        LP G     P  RG   +  + L    +I +
Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690
           ++ F   E+  + L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L   T 
Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840

Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+  V   + + D
Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            + + KV ++       R  A + +++L++GE + ++    E+E+
Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896


>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 809

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/891 (40%), Positives = 561/891 (62%), Gaps = 86/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +E E GI  V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ +
Sbjct: 1   MTDTKEFENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD+++R  L++GQGNFG++DGD  
Sbjct: 61  VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ KDTV+F PN+D   +EP +L +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HN+ EV+DG V  ID+ DI +  L E+I+GPDFPTGA+I+GR GI  AY TGR
Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIMGRDGINKAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I +    REQI++TE+PYQVNK+A++ KIAEL ++K I  I+ + D S++
Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+LK+ A+A+V+LN+LY+ T LQ  + +  +AL   +P+   L  +++ +V  +
Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RRT++ LNKA  RAH++ GL IA+ N+D V++IIR S                  
Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSS-----------------K 403

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D K++I+  D             L+++Q++AIL++RL RLTGL R+ ++NE + L  +IK
Sbjct: 404 DDKEVIEKFDRE---------FSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK ELL +KD+    RRT I     D++ ED I  ED+++T++  
Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQF 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   Y+ Q+RGG+G + +  +++DFV +LF+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G A++N+L+L++GE+IT+++   E +      Y++  T+ G +++    +F
Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPDH---YLLMVTEKGLIKKTSNKEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G I +KL   D+++SV     + +I+L TK G+ +RF    +R   GRN++GV+
Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRD-QGRNTMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D ++S  IV                         GD              GN 
Sbjct: 691 SMNLDEDDTIVSSDIV-------------------------GD--------------GN- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTVSE GFGK T   ++R  NR GKGI    +S+  + G + A  
Sbjct: 711 -------------YLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            VN +D I+L++D G +IR+ +++I + SR T GV + +   D ++V++ +
Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMN-LNDSKIVAIAK 805


>gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 823

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P+     ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I                                  LK +  V    
Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806


>gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
 gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
          Length = 832

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
 gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 833

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
 gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
          Length = 860

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/878 (40%), Positives = 522/878 (59%), Gaps = 86/878 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G  +N    KCA
Sbjct: 8   IIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G++MGKYHPHG++++Y+ L R+AQ W++R  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 68  RAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  +TVDF+ N+DG F+EP VL  R PN+L+NG  GIAVGMATN+  HNL
Sbjct: 128 NQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNL 187

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            E ++ C+A ID   +I +D LM+ ++ PDFPTG VI G  G+K A+ TGRG IVIRG +
Sbjct: 188 TETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRIVIRGKA 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+     E+I++ EIPYQV K+ M+ KIA+LV EK+I  I+D+ DES  +G R+VI++
Sbjct: 248 DIEEYHS-HERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDI 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A V+LN LY+Y+ L+S FSVN +AL   +P +  L  ++  FV  R +VV RR +
Sbjct: 307 KKDANAGVVLNYLYKYSDLESYFSVNNIALVNGRPRQLNLKDLIGHFVDHRHDVVTRRAQ 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++R H+L GL IAV ++DEV+RIIR S     A   LM+ ++N           
Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME-AFN----------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q RAI+++RL +LT L  D +++E N L   I      LS  
Sbjct: 415 --------------LSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDI 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +  + +I++E   + ++    RR+ IV    D+  ED    EDMV+T+SHLGY+KR PLS
Sbjct: 461 NMRMELIQEECREIIEKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLS 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R Q RGG G  G   RDEDFV  ++  + H +++ F++ G VY  +V+ +P GS  ++
Sbjct: 521 EFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSK 580

Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G+ + N+L L++  RIT    I     D    N  Y+VFAT+ G +++  L+ +    ++
Sbjct: 581 GRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKT 640

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   D+++SV       +I L  + G+CVRF    +R   GR + GVRGI L  
Sbjct: 641 GVRAINLRDDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVRGIRLDN 699

Query: 732 --GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M +                                                 
Sbjct: 700 DPNDKVVGMVV------------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              LK  ++ IL +SEKG+GKR+   D+RI+ R  KG++  +V+  ++ G L+ +  V D
Sbjct: 711 -HRLKNSDETILVISEKGYGKRSRIDDYRITKRGAKGVKTINVT--DKTGQLIDIRAVED 767

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +D I++++  G  IR+ + ++R+  RAT+GV +    K
Sbjct: 768 DDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNK 805


>gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
 gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
          Length = 825

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/885 (41%), Positives = 539/885 (60%), Gaps = 85/885 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K 
Sbjct: 3   EAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     +++NP++  + LME++ GPDFPTG +++G++GI+ AY TG+GSI +
Sbjct: 183 PPHNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSITV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG   + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+
Sbjct: 243 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+++R  SA VILN LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV 
Sbjct: 303 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++  NKA  RAH+L GL IA+ ++DE++ +IR S + + A+  +M+R          
Sbjct: 363 RRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AIL++RL RLTGL RD I NE  SL   I +  DI
Sbjct: 413 ----------------FSLSDRQAQAILDMRLRRLTGLERDKIENEYQSLLELIADLKDI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549
           L++  R+L II+ EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+K
Sbjct: 457 LANPQRVLEIIQTELQELGQRFGDERRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV  S +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF+++G VYK K + +P  
Sbjct: 517 RVANSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEY 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L ++  ERI  I+            Y+ F T+ G V+R  ++ F  I 
Sbjct: 577 GRAAKGIPVINLLGIDSNERIEAII--SASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE+++V     ++ +++ T  G  V F    +R   GR + GVRGI L
Sbjct: 635 ANGLIAIGLRENDELVNVVETNGQDVMIIGTHNGYSVTFKEELVRDM-GRTAAGVRGIRL 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+  +++                                  K DS V        
Sbjct: 694 REDDYVVGASVI----------------------------------KEDSEV-------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                      L ++E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+ 
Sbjct: 712 -----------LVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + I+L++DKG +IR  V  +    RAT GV +       +VV++
Sbjct: 759 KEDIMLITDKGVIIRFNVETVSQTGRATLGVRLMKMENGAKVVTM 803


>gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
 gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
          Length = 829

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/903 (41%), Positives = 550/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 2   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 411 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+                                    TS  +DS           
Sbjct: 692 EGDYVVG-----------------------------------TSRIDDS----------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 706 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   V+ + E E VD  E
Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 816

Query: 908 STE 910
            T+
Sbjct: 817 LTD 819


>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 835

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 546/904 (60%), Gaps = 88/904 (9%)

Query: 9   DEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           DE+E   ++ V  +I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++
Sbjct: 9   DEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKEMGLK 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N  Y K ARI G+V+GKYHPHG++A+Y A+ RM QD+SLR  +I+GQGNFGS+DGD  A
Sbjct: 69  HNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDGDFAA 128

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+      +L DL K+TVDF PNYDGS +EPV+L  + P++L+NG  GIAVGM
Sbjct: 129 AMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGIAVGM 188

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HN+ EV D  V +ID+ +I +  +++ I+GPDFPTGA+ILG++GIK+    GRG
Sbjct: 189 ATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIILGKSGIKDYMEKGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ IR  + IE+    RE I+V EIPYQVNKA ++  IA+LV++K+I  IADLRDESDR 
Sbjct: 249 SVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDESDRD 308

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+KR A+  V+LNQLY++T +Q  F V M+AL   +P+   +  IL   +  R+
Sbjct: 309 GIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNNRPKVMNVKEILIHHIEHRK 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +++RRTK+ L KA  R H+L GL IA+ N+D V++II+ S + + AR  LM +      
Sbjct: 369 VIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK------ 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+++QT AILE+++ +LTGL R +I +E   L   I++
Sbjct: 423 --------------------LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIRLIEK 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+   ++L IIK E L +K +    RRT+I     D   ED I  E++ VT+SH G
Sbjct: 463 LRSVLADPKKVLDIIKNEALDIKRKYGDKRRTQIQAAEADFNIEDLIQEEEVAVTMSHAG 522

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+PL  Y+AQ RGG+G + +  R+EDFV +LFI S+H+ +LFF++ G +Y  +++ +
Sbjct: 523 YIKRIPLDTYKAQHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMRIYEI 582

Query: 607 PIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSW-NNLYVVFATKHGNVRRNKLS 663
           P G+  ++GKA++N+L L QG  E+IT  +P       +  + Y++  T++G +++  L 
Sbjct: 583 PEGARTSKGKAIVNLLQL-QGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKIALD 641

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            FI   + G IA+KL+  D +  V+   +  ++++ TK G  +RF  S IRV  GR   G
Sbjct: 642 KFINPRKRGIIAIKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVI-GRAGRG 700

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+GI L KGD+VI M +                         S D   ++  +N      
Sbjct: 701 VKGIELKKGDEVIGMEV------------------------FSPDDVFLSISENGYGKRT 736

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            + + R Q+              G G      + ++S R+G                ++ 
Sbjct: 737 KVGKYRLQK------------RAGHG----VINMQMSERNGN---------------MIG 765

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +   ND +++++++  G  IR+ VN I +  R T+GV +      ++V ++  + + E  
Sbjct: 766 IKKANDGEEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIACVVKDENS 825

Query: 904 DEAE 907
           +E +
Sbjct: 826 EEPQ 829


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K D          
Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 833

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45]
 gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45]
          Length = 919

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/893 (39%), Positives = 537/893 (60%), Gaps = 90/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+G GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  +ADLRDES+R G R
Sbjct: 309 VRSIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ LNKA+DR H+L GL +AV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSAR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+  + 
Sbjct: 480 -----------------FNLSEKQTKAIVDMRLGRLTGLAIDSMIEEMKNLSAEIERIIS 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           ILS +  L  +I  EL  +K++    RRT I + L   ++DED I + D+V+T S  GYV
Sbjct: 523 ILSDKKLLTELIIDELTEIKNKFADDRRTVIDKNLSASIDDEDLITKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D +  +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            + Q++G + INI   L +++GE++ +++    DE S +N Y+  ATK G +++  LS+F
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAV--DEYS-DNKYLFTATKLGIIKKTSLSEF 699

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN +GK A  L   DE++       +  +LL     + V+F  +  R  + R + GV+
Sbjct: 700 QIININGKRAFNLKENDELIRASIINDDELVLLANDKQRIVKFHSNEFRALS-RIATGVK 758

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA  +  IS +                                       SS EG  
Sbjct: 759 GITLADDETCISAS---------------------------------------SSSEG-- 777

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + ILT+   GFGK T    FR+ +R GKG+   +  K    G LV   
Sbjct: 778 ------------ELILTIGRNGFGKITHHSLFRLVHRGGKGVIGINSDK---AGNLVFAR 822

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE ++
Sbjct: 823 FVNPHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLKKKEQIQAVEIVK 875


>gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 823

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D ++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDALLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P+     ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I                                  LK +  V    
Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806


>gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
 gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
          Length = 823

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K D          
Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
 gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
          Length = 836

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/903 (40%), Positives = 552/903 (61%), Gaps = 86/903 (9%)

Query: 10  EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           E+E  G IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   EQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 63  KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GSI
Sbjct: 183 NIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G 
Sbjct: 243 IVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM          
Sbjct: 363 VRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 DD S          LS+ Q +AIL+LRL RLTGL R+ I +E   L   I +  
Sbjct: 413 ------DDYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+ + R+  II  EL+ ++++    RRT +  G + ++EDED I  ED++VT++H GY
Sbjct: 457 DILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +P
Sbjct: 517 VKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F  
Sbjct: 577 EYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQK-DLFFVTRQGTVKRTPVTEFKN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG 
Sbjct: 636 IRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGA 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD +I  A                                   L  D  V      
Sbjct: 695 RLRDGDYLIGAA----------------------------------PLNEDDQV------ 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  V
Sbjct: 715 -------------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +E+   D  
Sbjct: 760 QGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPT 819

Query: 907 EST 909
           E++
Sbjct: 820 EAS 822


>gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni]
 gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 866

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/887 (40%), Positives = 535/887 (60%), Gaps = 84/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM ++GV  +K + K A
Sbjct: 15  IKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVTPDKPHKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSVDGDP AA RYTE RL
Sbjct: 75  RIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAAAMRYTEARL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 135 SKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGMATNIPTHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ AY TGRGS+ +R    
Sbjct: 195 REVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRAYETGRGSVTVRSKVD 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +RDESD+ G R+ I++ 
Sbjct: 255 IETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQNGLRIAIDVG 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A++  + E++ RRT++
Sbjct: 315 RDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVAYLEHQREIIRRRTEF 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R               
Sbjct: 375 DLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQ------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R  I  E   L   I++  DIL+   
Sbjct: 422 -------------LSDKQAQAILDMRLVRLTGLERGKIEAEYTDLLKSIEDFKDILAKPE 468

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II QELL + ++    RRT +  G +  +EDED I  E+++++++H GY+KR+  S
Sbjct: 469 RIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTS 528

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VYK K + +P    QA+
Sbjct: 529 EFHTQNRGGRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAK 588

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L L+ GER+  ++    D ++  + ++ F TK G V+R  +S+F  I +SG  
Sbjct: 589 GIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKRTAVSEFTNIRQSGLR 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D ++SV     + +I++ +  G  V F  S +R   GR + GVRG++L   D 
Sbjct: 648 AINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GRTASGVRGMNLRDKDY 706

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +                       LI GD                          
Sbjct: 707 VVGADL-----------------------LIPGDN------------------------- 718

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G L  +  V+ ++ I+
Sbjct: 719 -----VLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--GPLAGLAVVSGDEDIM 771

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +D G +IR    ++ I  RAT GV +    +  +V ++ ++ + E
Sbjct: 772 ITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEE 818


>gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 823

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P+     ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I                                  LK +  V    
Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806


>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 814

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/895 (41%), Positives = 536/895 (59%), Gaps = 115/895 (12%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+ +N  Y K ARI 
Sbjct: 9   INIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKSARIV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG++++YDA+ RMAQ++SLR +L++GQGNFGSVDGDPPAA RYTE RL + 
Sbjct: 69  GEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEARLTRL 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTV+F PN+D S +EP VL +R P +L+NG  GIAVGMATNIP HNL E+
Sbjct: 129 AGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHNLTEL 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D    +IDNP+  L+ LM+ ++GPDFPTG +ILGR GIK+AYATG G +V+R  +H+  
Sbjct: 189 CDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARAHVAD 248

Query: 259 T--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
              +G R QI+++E+PYQVNKA ++++IA L RE++I  IA++RDESDRQG RVVIELKR
Sbjct: 249 VAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVIELKR 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
                 ILN LY++T+LQ+ F VNM+AL   +P    L   L  +VAFR+E++ RR+K+ 
Sbjct: 309 DGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRRSKFE 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L  AR RAH+L GL IA+ NLD ++ +IR + N +TARRELM R                
Sbjct: 369 LKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSR---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LS++Q +AIL+L+L RL  L R  I  E   +  +I    D+L++  +
Sbjct: 413 ----------FELSQLQAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLANPRK 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L ++K +L  VK      RRT I  +G+++  +ED I  + MVVT++  G++KRVP  V
Sbjct: 463 VLSLVKDDLAEVKARYGDARRTEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEV 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-AR 614
           YR Q R G+G+S +  R+ D V  + +  TH SVL F++ G ++  K   +P    + A+
Sbjct: 523 YRLQHRAGRGKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAK 582

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G A+IN++ L + ERIT+++    F E+ S      ++ AT  G  +R KLSDF  +  S
Sbjct: 583 GIAIINLVPLAENERITSMIAVSRFDEETS------LIMATSGGECKRTKLSDFAAVRSS 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G +AM L   DE++       + +I+L T  G+ + FP++ +RV + R S GVRGI+L  
Sbjct: 637 GLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHFPVADLRV-SQRASGGVRGITLEG 695

Query: 732 GDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            D+V  + +      VL        ++  ++    QRR  SG                  
Sbjct: 696 DDRVAGLDVARPGHFVLVVTTGGYGKLTAVEEYPLQRRAGSG------------------ 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT              F++ +++GK                VA  
Sbjct: 738 --------------VLT--------------FKVVDKTGK----------------VAAG 753

Query: 846 PVNDND-QIILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVS 893
            V D + Q+++ + +G +IR PV        I +  R+T+GV++    +++RVV+
Sbjct: 754 KVVDREHQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVIRPDENDRVVN 808



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 746 ADYDERICYMKHMSAQRR----LISGDTEEITSLKNDS-----SVEGNISEERCQELKLK 796
           AD  ++I Y++ + A  R    L+  D  E+ +   D+       +G I E R ++L   
Sbjct: 444 ADILKQISYLEDLLANPRKVLSLVKDDLAEVKARYGDARRTEIQSQGVI-EFREEDLIPH 502

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +  ++T++E+GF KR  +  +R+ +R+G+G     + K  E  ++  +   + +D ++L 
Sbjct: 503 QSMVVTLTERGFIKRVPTEVYRLQHRAGRG---KSIIKTREADSVRFIMVADTHDSVLLF 559

Query: 857 SDKGTLIRVPVNEIRI-ASRATKGVVIFS---TAKDERVVSV 894
           +++G +  +  +EI     R  KG+ I +    A++ER+ S+
Sbjct: 560 TNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSM 601



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854
           +E  ++  +  G  KRT   DF     SG  + A D+ K +E IGA++A      ++ II
Sbjct: 609 EETSLIMATSGGECKRTKLSDFAAVRSSG--LLAMDLPKNDELIGAVIA----GADENII 662

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           L++  G  I  PV ++R++ RA+ GV   +   D+RV  ++  R    V
Sbjct: 663 LITHNGRSIHFPVADLRVSQRASGGVRGITLEGDDRVAGLDVARPGHFV 711


>gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 912

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/723 (45%), Positives = 476/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E   +   TE
Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 40/240 (16%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D +           ++ FS+LG   +  + W
Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632
                                        LP G     P  RG   +  + L    +I +
Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690
           ++ F   E+  + L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L   T 
Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840

Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+  V   + + D
Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            + + KV ++       R  A + +++L++GE + ++    E+E+
Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896


>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
 gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
          Length = 885

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/877 (41%), Positives = 536/877 (61%), Gaps = 51/877 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQ-KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ      +L D+  +TVDF  N+DGS QEP+VL +R P + +NG  GIAVGMATNIP
Sbjct: 125 CRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG VA+I N +I  + L++ I GPDFPTGA ILG++GI++AY  GRGSI +R
Sbjct: 185 PHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQILGKSGIRDAYTLGRGSITMR 244

Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE    +   D+E I+VTE+PYQ NKAA++EKIAELV +K+I  I+D+RDESDR G
Sbjct: 245 GVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRNG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQ+ F  N++AL   +P+  TL   L+ F+ FR E
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSEPQLLTLKKYLEVFLEFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+ NLDE++++IR + +   A++EL++        
Sbjct: 365 TITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYG----- 419

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ+ AIL+++L RLT L    I+ E   L ++I + 
Sbjct: 420 ---------------------LSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHL 545
            DIL+ R R+L II+ E + +K+   TPRRT   + EG LD  D D I  E  ++ ++  
Sbjct: 459 QDILAKRERILEIIETEAIEIKERHATPRRTVIELAEGELD--DTDLIANEKAIILLTEQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + AQ R  +G+SG  M+++D V        H S+LFFS  G VY    ++
Sbjct: 517 GYIKRMPVNSFEAQSRATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQ 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +PIGS  ARG  ++ +L + + E++T+I+   E     ++ Y+V  TK G +++  LS F
Sbjct: 577 IPIGSRVARGVPIVQMLPIPRDEKVTSIVAVSE---FTDDKYLVMLTKGGYIKKTSLSAF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
             I  +G IA+ L   D +  V     ++ +++ +  G  + F     ++   GRN+ GV
Sbjct: 634 ANIRSNGLIAISLGEGDSLRWVRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPLGRNTRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD++ISM I+  +  +    I        +  L     E      ++ +   N
Sbjct: 694 KSMKLIKGDELISMDILPSSIVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNN 753

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I             ++L ++  G+GKR     F + NR GKG  AT   +  +    VA 
Sbjct: 754 IG-----------SWVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAA 802

Query: 845 FP-VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
              VN+++++++++ KG +IR  ++ I I SR+  GV
Sbjct: 803 LRVVNESEELMIITAKGIIIRQAIDAISIQSRSATGV 839


>gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064]
          Length = 807

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/856 (42%), Positives = 524/856 (61%), Gaps = 86/856 (10%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG+ A+Y  + RMAQ
Sbjct: 1   PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+S R +L++G GNFGSVDGD  AA RYTE R+ K +  LL D+ KDT+D+  NYDGS +
Sbjct: 61  DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EPV+L AR+PN+LVNG  GIAVGMATNIPTH+LGEV+DG +A+  +PDI +  LME I G
Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPT  +I+GR+GI+ AY +GRGSI +RG   IE+    +E IV+TEIPYQVNKA ++E
Sbjct: 181 PDFPTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVE 240

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           +IAEL REK+I  I  L DESDR G R+VIE++R  SA VI+N L++ T+LQ+ F +NM+
Sbjct: 241 RIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINML 300

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL IA+ N+D +++
Sbjct: 301 ALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIK 360

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S   + A+  LM + +N                         LS+ Q +AIL++RL
Sbjct: 361 LIRGSKTSDVAKEGLMTQ-FN-------------------------LSDKQAQAILDMRL 394

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K +    RRT I+ 
Sbjct: 395 QRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILA 454

Query: 523 G-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           G L+ +EDED I  E++ +T++  GY+KR+PLS YR+QRRGG+G  G+   ++DFV  L 
Sbjct: 455 GDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLV 514

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             STH ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  ++   E   
Sbjct: 515 ATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSE--- 571

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             ++ Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+      ++++ TK
Sbjct: 572 FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATK 631

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ + FP   IRV  GR + GVRGI L + D+VI M +                     
Sbjct: 632 HGQSIYFPEENIRVM-GRTAAGVRGIRLREDDEVIGMEV--------------------- 669

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                        L++D  V                   L V+EKG+GK+T +  + + N
Sbjct: 670 -------------LEDDEKV-------------------LVVTEKGYGKQTPASQYPLRN 697

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  GV 
Sbjct: 698 RGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVK 755

Query: 882 IFSTAKDERVVSVERI 897
           +    +DE+V +V ++
Sbjct: 756 LIRLDEDEKVATVAKV 771


>gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
 gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
          Length = 836

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/909 (40%), Positives = 549/909 (60%), Gaps = 95/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+                                    TS  +DS           
Sbjct: 699 EGDFVVG-----------------------------------TSRIDDS----------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---------ERIRESE 901
           + +++++D G +IR  V  I    RA +GV +     + ++V+          E     E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 823

Query: 902 IVDEAESTE 910
           + DEA ST+
Sbjct: 824 VTDEALSTD 832


>gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640]
 gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica]
 gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06]
          Length = 912

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E   +   TE
Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 40/240 (16%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D +           ++ FS+LG   +  + W
Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721

Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632
                                        LP G     P  RG   +  + L    +I +
Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690
           ++ F   E+  + L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L   T 
Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840

Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+  V   + + D
Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899



 Score = 39.3 bits (90), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            + + KV ++       R  A + +++L++GE + ++    E+E+
Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896


>gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467]
          Length = 833

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 ISIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+       DE                                      
Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  KE  ++T  E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR ++ +FR   R G+G++   V   + +  LV+    + +D ++  ++ 
Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895
           G + R    EI    R  KG+ +       S  K + ++SVE
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605


>gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 841

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/881 (40%), Positives = 521/881 (59%), Gaps = 91/881 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           + SITD MQ +Y+ Y+++VI+ RA+PD RDG KPV RRIL+ M++ G+  N+ + KCA +
Sbjct: 18  ATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAMLREGLLHNRPFDKCAGV 77

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+  YHPHG++++YD L R+AQDW +R  LI  QGNFGS+DGD PAA RYTEC+LQ 
Sbjct: 78  VGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSIDGDSPAAYRYTECKLQA 137

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L D+ +DTVDF PNY  S  EP VL A  PN+L+NG  GIAVGM TNIP HNL E
Sbjct: 138 IAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGSTGIAVGMTTNIPPHNLNE 197

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D   A+IDNP I+LD L++ I GPDFP G  I G++GI++   TGRG +  RGV+ + 
Sbjct: 198 IIDAACAIIDNPKIELDELIQFIPGPDFPGGGFIHGKSGIESYLKTGRGIVRTRGVAEVV 257

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +  G +E+I+++ IPY VN+A+++ +IAEL++EK I  I+DLRDES  +  R+VIELKRG
Sbjct: 258 ENKG-KEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLRDESTEE-TRIVIELKRG 315

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A   VI+NQLY+ T+L+S F V ++AL+  +P++  +  +L  ++  R EV+ RRT + L
Sbjct: 316 AIPRVIINQLYKSTALESSFGVILLALDNRRPKQMNIKEMLTCYIDHRREVIYRRTAFRL 375

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L G  IA+ N+D+ V+IIR S N E A+  LM +                 
Sbjct: 376 RKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMAK----------------- 418

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+E+QT AILELRL +LTGL RD I  E   L   I E  DIL + SRL
Sbjct: 419 ---------YPLTEIQTNAILELRLYQLTGLERDKIEEEYRKLMELIGELKDILENESRL 469

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L +IK+EL  +K++   PRR++++    D+  ED +  E  ++TV+H G++KR  L  YR
Sbjct: 470 LEVIKEELGEMKEKYGNPRRSQVIAVDGDISMEDLVPNEGCMITVTHKGFIKRTSLDEYR 529

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGGKG  G    ++DFV  LF  STH  V+ F + G VY EKV+ +P GS  A+G+A
Sbjct: 530 SQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYVEKVYHIPEGSRTAKGRA 589

Query: 618 LINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           + N+  L +GE+I  ++   + DES+ +   +V AT++G  ++ KLSDF    + G I +
Sbjct: 590 MANVFELQEGEKIAAMICVKDFDESAQS---IVLATENGVTKKTKLSDFRNHRKGGIIGI 646

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +D  D ++     + E+DI+L T   Q +RFP + +R   GRN+ GVRGI L       
Sbjct: 647 NIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLR-DQGRNTRGVRGIKLKS----- 700

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                                                  +ND  V   I ++  +     
Sbjct: 701 ---------------------------------------ENDKVVAIEIVDDEAK----- 716

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L     G GKRT   ++R  +R G GI A    K+   GAL     V D D+I++ 
Sbjct: 717 ---LLIAGANGLGKRTEFSEYRQQSRGGSGIIAIKSDKV--AGAL----SVTDADEIMMF 767

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + KG  +R P++ +R+  RA  GV + +    + ++ + ++
Sbjct: 768 TLKGQAVRSPIDTVRVTGRAASGVKLVNLGNKDELIGISKV 808


>gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
 gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
          Length = 859

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/897 (40%), Positives = 546/897 (60%), Gaps = 86/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  + ++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEFKENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ+WS R  L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     ++ NPD     LME I GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     +E+I+V E+PY VNKA ++E+IA+L R+KRI  I DL DESDR G R
Sbjct: 243 VRAKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+++R  SA V+LN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  +E V+
Sbjct: 303 VVIDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEIVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y   KA  RAH+L GL IA+ ++DE++RIIR S   + A+  L++          
Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE Q++AIL++R+ RLTGL RD I  E   L   I +  D
Sbjct: 413 ----------------TYGLSEKQSQAILDMRMVRLTGLERDKIEAEYTELMALIADMAD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+  II+ ELL V++     RRT ++ G +L +EDED I  ED+V+T++  GY+
Sbjct: 457 ILANPERVHTIIETELLEVQERFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S +++QRRGG+G  G+ + D+DF+  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPSSEFKSQRRGGRGVQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++ GE +  ++    +  +   LY+ F T+ G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGVDSGETVQAVINVRGE--AEEGLYLFFTTRLGTVKRTDVKAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++SV     + +I++ T +G  V F    +R   GR + GVRGI 
Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI +                         L++ D+E                  
Sbjct: 694 LRENDYVIGVD------------------------LLTEDSE------------------ 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GKRT + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 712 -----------VLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            ++ I+L+++ G +IR  V+ +    RAT GV +   A+D +V ++ ++ ++E++ E
Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEDVKVSTMAKV-DAEVIKE 814


>gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 836

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/903 (40%), Positives = 552/903 (61%), Gaps = 86/903 (9%)

Query: 10  EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           E+E  G IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   EQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 63  KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  ++ D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEAKMSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GSI
Sbjct: 183 NIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G 
Sbjct: 243 IVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM          
Sbjct: 363 VRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 DD S          LS+ Q +AIL+LRL RLTGL R+ I +E   L   I +  
Sbjct: 413 ------DDYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+ + R+  II  EL+ ++++    RRT +  G + ++EDED I  ED++VT++H GY
Sbjct: 457 DILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +P
Sbjct: 517 VKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F  
Sbjct: 577 EYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQK-DLFFVTRQGTVKRTPVTEFKN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG 
Sbjct: 636 IRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGA 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD +I  A                                   L  D  V      
Sbjct: 695 RLRDGDYLIGAA----------------------------------PLNEDDQV------ 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  V
Sbjct: 715 -------------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +E+   D  
Sbjct: 760 QGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPT 819

Query: 907 EST 909
           E++
Sbjct: 820 EAS 822


>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
 gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
          Length = 859

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/887 (40%), Positives = 533/887 (60%), Gaps = 86/887 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K ARI G+
Sbjct: 14  ISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDKPYKKSARIVGD 73

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+ K AH
Sbjct: 74  VMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARMSKIAH 133

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            ++ D+ KDTVDF PNYDG  +EP VL AR+PN+LVNG  GIAVGM TNIPTHNL EV+ 
Sbjct: 134 EMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTNIPTHNLSEVIG 193

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               ++ N D   + LME + GPDFPTG +++G++GI+ AY TG+G+I++R    IE  S
Sbjct: 194 AIKILMQNADATTNELMEALPGPDFPTGGIVIGKSGIRKAYETGKGTIIVRAKLDIETLS 253

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +E+I+V EIPY VNKA ++E+IAEL R+KR+  I  +RDES R+G RVVIE ++ ASA
Sbjct: 254 SGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMRVVIECRKDASA 313

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            VI+N LY+YT LQ+ F +NMVA+    P   +L  IL+ ++  +EEV+ RR+ +  NKA
Sbjct: 314 SVIVNNLYKYTQLQTNFGINMVAIVNGVPRTLSLKEILQNYLLHQEEVIRRRSIFEKNKA 373

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L GL IA+ ++DE+V I+R S + + A+   ++      D K            
Sbjct: 374 EARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIE------DYK------------ 415

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+ Q++AIL++RL RLTGL R+ I  E   L  +I     +L S +    I
Sbjct: 416 --------LSDKQSQAILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQVLGSETMRYQI 467

Query: 501 IKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I  EL+ ++ +    RRT ++ G + +++DED I   +++VT++  GY+KR+    +RAQ
Sbjct: 468 IYDELIEIESKFGDDRRTELMVGEIHNIDDEDLIEESNVIVTLTQNGYIKRIDDVEFRAQ 527

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGG G  G+ M D+DFV  +   STH SVLFF++ G V+  K + +P     A+G  ++
Sbjct: 528 NRGGTGVKGMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPEFGRAAKGIPVV 587

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L+L Q E +  ++     E +    +++F TK+G V+R   SD+  I  +G IA+KL 
Sbjct: 588 NLLNLQQDETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLA 647

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE++ V   + +++I++ ++ G  V F  + +R   GR + GVRGI L  GDQV+ M+
Sbjct: 648 EGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSM-GRTATGVRGIRLNDGDQVVGMS 706

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +                                  L  D +V                  
Sbjct: 707 V----------------------------------LGPDDNV-----------------L 715

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T    G     S Y  +  NR GKG++  +V++ N  G LV +  V+  + I+L++++
Sbjct: 716 VVTEKGYGKQTPASEYGIK--NRGGKGVKTINVTEKN--GILVGLTTVSGEEDIMLMTNQ 771

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           G  IR     I    RAT+GV +   A+D  V ++ ++   E ++EA
Sbjct: 772 GIAIRFHAKNISQTGRATQGVRLIRLAEDSYVSAIAKV---EAIEEA 815


>gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57]
          Length = 828

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/882 (41%), Positives = 543/882 (61%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   GR + GV G
Sbjct: 635 RSYSGIRAIVLDKGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-GRTTRGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V+  D +                                       
Sbjct: 694 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
 gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
          Length = 916

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIRG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
 gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
          Length = 826

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/880 (41%), Positives = 543/880 (61%), Gaps = 93/880 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + R T I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+ KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKKGVVKRTNLSEF-DSN 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +G  A+ LD  DE++S +   +    +L+ + LG  ++F +  +R   GR + GVRGI 
Sbjct: 635 YNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREI-GRTTRGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+V+  D++                                         
Sbjct: 694 LNENDFVVG-AVVISDDSNK---------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  V+
Sbjct: 713 -----------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVISVD 759

Query: 849 D-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 DENLDLMILTASAKMIRVSIQDIKETIGRNTSGVKLIDTA 799



 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 18/128 (14%)

Query: 781 VEGNISEERCQELK------------LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           V+   S +RC E++              E  ++++S KG+ KR     +   NR GKG  
Sbjct: 477 VKEQFSSQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKL 536

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
           + +  + + I      F  N +D ++ +++KG L R+ V +I  ASR   G   V + S 
Sbjct: 537 SGNTYEDDFIENF---FVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISL 593

Query: 886 AKDERVVS 893
           A DE++++
Sbjct: 594 APDEKIMA 601


>gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273]
 gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273]
          Length = 815

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/879 (41%), Positives = 527/879 (59%), Gaps = 87/879 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K AR+ GEV+GK
Sbjct: 1   MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YD+L R+ QD+SLR  LI+GQGNFGS+DGD PAA RYTE R+++ A  +L 
Sbjct: 61  FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL EVVDG +A
Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +I NP++++  LM+ +  PDFPT  +I G  G++ AY TGRG +VIR  + IE T  + R
Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAGIIYGYEGVRQAYLTGRGKVVIRARALIEVTQKNGR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E IVVTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR G R+VIELKR A A V+
Sbjct: 241 ESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT++ L  A  R
Sbjct: 301 LNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERR 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL I + NLDEV+  IR SP+  TA+  LM+R                       
Sbjct: 361 AHILEGLKICLDNLDEVITTIRESPDANTAQDRLMER----------------------- 397

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                LSE+Q +AILE+RL RLTG+ R  I  E       I E   IL S  R + II+ 
Sbjct: 398 ---FALSEIQAKAILEMRLQRLTGMERQKIDAEYKETLATIDELRLILQSPERQMEIIRT 454

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           ELL VK+     RRT IV    D   ED I +ED+V+TV+H G++KR P+S YR Q RGG
Sbjct: 455 ELLKVKEVYGDERRTEIVPQEGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG +G   + +DF+  +F+ STH  +LFF++ G  Y  KV+ +P     ARG+AL NI+ 
Sbjct: 515 KGVTGAQAKHDDFIEHMFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIME 574

Query: 624 LNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           L+  E+I   +     DE      Y++ AT  G V++  L +F +  R+G  A+ +D  D
Sbjct: 575 LHPDEKIKAYINIRNFDEPG----YIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGD 630

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +L       ++ ++L    G  VRFP   +R   GR ++GV+GI+L +G++ I+M    
Sbjct: 631 ALLDARLTDGDHQVILAKSSGLVVRFPEVQVRPM-GRTAMGVKGITLDRGEKCIAM---- 685

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                        +T+ + D++                   +L 
Sbjct: 686 -----------------------------VTTKRTDTA-------------------LLA 697

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V++ GFGKR+   D+R++ R  +G+    +    +IG+LV +  VND+D +IL++  G +
Sbjct: 698 VTDNGFGKRSRVEDYRLTKRGARGV--ITLKAHEKIGSLVGLLDVNDDDDLILITTHGIV 755

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            R  V++IRI  R T GV +      + + ++ R+ +S+
Sbjct: 756 NRQHVSDIRITGRNTSGVKLIRLMAGDTISALARVPKSD 794



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VK+  L  +   RR G   + + + + D + D  +      V+   S G V +    +
Sbjct: 603 GIVKKTALEEFSRPRRNGI--AAITIDEGDALLDARLTDGDHQVILAKSSGLVVRFPEVQ 660

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +    P  R    +  ++L++GE+   ++      +   +  ++  T +G  +R+++ D+
Sbjct: 661 V---RPMGRTAMGVKGITLDRGEKCIAMV-----TTKRTDTALLAVTDNGFGKRSRVEDY 712

Query: 666 IQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               R  +  + L + ++I S+        ++D++L T  G   R  +S IR+  GRN+ 
Sbjct: 713 RLTKRGARGVITLKAHEKIGSLVGLLDVNDDDDLILITTHGIVNRQHVSDIRI-TGRNTS 771

Query: 723 GVRGISLAKGDQVISMAIVLHADADYD 749
           GV+ I L  GD + ++A V  +D + D
Sbjct: 772 GVKLIRLMAGDTISALARVPKSDEETD 798


>gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
 gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
          Length = 866

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/887 (40%), Positives = 534/887 (60%), Gaps = 84/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM ++GV  +K + K A
Sbjct: 15  IKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVTPDKPHKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSVDGDP AA RYTE RL
Sbjct: 75  RIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAAAMRYTEARL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 135 SKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGMATNIPTHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ AY TGRGS+ +R    
Sbjct: 195 REVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRAYETGRGSVTVRSKVD 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +RDESD+ G R+ I++ 
Sbjct: 255 IETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQNGLRIAIDVG 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A++  + E++ RRT++
Sbjct: 315 RDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVAYLEHQREIIRRRTEF 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R               
Sbjct: 375 DLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQ------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R  I  E   L   I++  DIL+   
Sbjct: 422 -------------LSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPE 468

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II QELL + ++    RRT +  G +  +EDED I  E+++++++H GY+KR+  S
Sbjct: 469 RIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTS 528

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VYK K + +P    QA+
Sbjct: 529 EFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAK 588

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L L+ GER+  ++    D ++  +  + F TK G V+R  +S+F  I +SG  
Sbjct: 589 GIPVINLLGLDAGERVQAVINVRGDAATSKD-SLFFTTKLGTVKRTAVSEFTNIRQSGLR 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D ++SV     + +I++ +  G  V F  S +R   GR + GVRG++L   D 
Sbjct: 648 AINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GRTASGVRGMNLRDKDY 706

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +                       LI GD                          
Sbjct: 707 VVGADL-----------------------LIPGDN------------------------- 718

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G L  +  V+ ++ I+
Sbjct: 719 -----VLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--GPLAGLAVVSGDEDIM 771

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +D G +IR    ++ I  RAT GV +    +  +V ++ ++ + E
Sbjct: 772 ITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEE 818


>gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16]
          Length = 828

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/882 (41%), Positives = 544/882 (61%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++V+LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEVVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV G
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRTTRGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+  A+V+  D +                                       
Sbjct: 694 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV++  
Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSIIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
          Length = 916

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIRG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 829

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/909 (40%), Positives = 549/909 (60%), Gaps = 95/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 2   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 411 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+                                    TS  +D+           
Sbjct: 692 EGDFVVG-----------------------------------TSRIDDN----------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 706 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---------ERIRESE 901
           + +++++D G +IR  V  I    RA +GV +     + ++V+          E     E
Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 816

Query: 902 IVDEAESTE 910
           + DEA ST+
Sbjct: 817 VTDEALSTD 825


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 836

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/909 (40%), Positives = 549/909 (60%), Gaps = 95/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+                                    TS  +D+           
Sbjct: 699 EGDFVVG-----------------------------------TSRIDDN----------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---------ERIRESE 901
           + +++++D G +IR  V  I    RA +GV +     + ++V+          E     E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 823

Query: 902 IVDEAESTE 910
           + DEA ST+
Sbjct: 824 VTDEALSTD 832


>gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 832

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/897 (40%), Positives = 536/897 (59%), Gaps = 88/897 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           + E  I ++E E  GI + ++   M++S+L Y+++VI+ RA+PD+RDGLKPV+RRIL+ M
Sbjct: 9   IVEPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYAM 68

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G       VK A+I GEVMG YHPHG+++IYDA+  +AQ W +R  L+EGQGNFGS+
Sbjct: 69  NKNGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGSM 128

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K    LL D+ K+TVDFR N+DG+ +EPVVL +  PN+L+NG  
Sbjct: 129 DGDEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQM 188

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  VA IDNP+I LD L+  I+GPDFPTGA + G   ++ A
Sbjct: 189 GIAVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGGAPMRQA 248

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ IR V+ IE+    R  I+VTE+PY ++K   ++K+ ELV  K+I  IAD R
Sbjct: 249 YETGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIADAR 308

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           DES R   RVV+ELK+ A    ILNQLY+ T LQ+ F  N++AL NG +P+   L  IL 
Sbjct: 309 DESARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKEILA 368

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ V+ RRT++ L KA++RAH+L GL IA+ ++DEV++ IR S +   A + LM+
Sbjct: 369 EFIKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYD--DADKRLME 426

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q  AIL ++L RL GL RD I +EL  
Sbjct: 427 R--------------------------FGLSEIQAAAILAMQLRRLQGLERDKIEDELKQ 460

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDM 538
           L   IK+   IL+S   +L ++K ELL++KD+    RR++I+   L    DE+ I  E+ 
Sbjct: 461 LHELIKKLEAILASEQEILNVVKTELLAMKDKYGDERRSKIINHELGKFSDEELIPEEES 520

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+ ++   Y+KR  +S YR Q RGGKG+ G+  ++ED +  +   STH  +LFF+++G +
Sbjct: 521 VILLTSENYIKRTLVSDYRRQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRI 580

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           ++ K + +P  S  A+G A +N+L L   E+IT I+    ++++ +  Y+  AT+ G V+
Sbjct: 581 FRLKAYEVPAASLSAKGVAAVNLLQLQPEEKITAII--KHEKNANDKGYLFMATQKGTVK 638

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  + D+  +  +G IA+KLD  DE+  ++  + +ND++++T  GQ +RF     R   G
Sbjct: 639 KTPVKDYANVRTNGLIAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPM-G 697

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GVRG+ L   D V+ M IV                        +GD          
Sbjct: 698 RSARGVRGVRLRPNDSVVGMDIV------------------------TGD---------- 723

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             +Q +L VSEKGFGKRT   +F    R G GI+A  V+   + 
Sbjct: 724 ------------------DQTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTA--KT 763

Query: 839 GALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G +++V  ++    + +LVS  G  IR+ +++I++  R T+GV I   +  + V S+
Sbjct: 764 GPIISVQTIDPEVTEALLVSQNGQTIRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSI 820



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE-NDILLTTKLG 703
           ++  ++ G  +R K+S+F    R G   K A+       I+SV+T   E  + LL ++ G
Sbjct: 727 LLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTAKTGPIISVQTIDPEVTEALLVSQNG 786

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           Q +R  +S I++  GR + GV  + L+ GD V S+   L AD   DE
Sbjct: 787 QTIRLSLSDIKLL-GRTTQGVTIMRLSDGDAVSSIG--LMADRPQDE 830


>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
 gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
 gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
          Length = 856

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/897 (41%), Positives = 533/897 (59%), Gaps = 75/897 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 7   IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGS+D DPPAA RYTE RL
Sbjct: 67  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTESRL 126

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 127 KPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             E++ G +A+I NP+I    LM  I GPDFPTG  +LG  GI++AY TG+GSI +RGV+
Sbjct: 187 PTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMRGVA 246

Query: 255 HIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            I+         R+ I++TE+PYQ NKAA++E+IAE+V EKR+  I+D+RDESDR G R+
Sbjct: 247 TIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDGMRI 306

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY+ T LQS FS NM+AL   +P   TL   L+ F+ FR E + 
Sbjct: 307 VIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIETIE 366

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L GL IA+ NLD ++ +IR S +   A++E             L
Sbjct: 367 RRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQE-------------L 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ID+               LSEVQ+ AIL+++L RLT L  + I  E   L   I++  DI
Sbjct: 414 IDVYG-------------LSEVQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDI 460

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R R+L II+ EL  ++     PRRT ++E   ++E  D I  E  ++ ++  GY+KR
Sbjct: 461 LARRERVLEIIETELEQLQQRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P++ + AQ RG +G++G   +D+D V        H ++LFFS  G VY    +R+P  S
Sbjct: 521 MPVNEFTAQSRGTRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAAS 580

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ARG  ++ +L + + ERIT+I+P   F +DE      Y+V  T+ G +++  LS F  
Sbjct: 581 RNARGVPIVQLLPIPREERITSIVPVSAFSDDE------YLVMLTQGGYIKKTALSAFAN 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVR 725
           I  +G IA+ L   D++  V     E+ IL+ ++ G  + F  S   +R   GR + GVR
Sbjct: 635 IRSNGLIAIALSEGDQLRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPL-GRATRGVR 693

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +SL  GD +ISM ++               +M+      +GD +E      D +VE   
Sbjct: 694 AMSLRSGDTLISMDVL---------PASLTANMTE-----TGDEDEA-----DDAVEVVA 734

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAV 844
           S            ++L V+ +G GKR   + FR+  R+G G+RA    SK +E   LV++
Sbjct: 735 S---------PGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFRSKQDE---LVSL 782

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             V   D+++++S +  +IR   + I   SRA  GV +     D+ + +V  +   E
Sbjct: 783 RIVESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGE 839


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  ++
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTIS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18]
 gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140]
 gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1]
 gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
          Length = 916

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 831

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/896 (40%), Positives = 548/896 (61%), Gaps = 85/896 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K A
Sbjct: 5   ITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE ++
Sbjct: 65  RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 125 SKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GSI++R    
Sbjct: 185 GEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSIIVRAKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G R+VI+++
Sbjct: 245 IEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EEVV RRT++
Sbjct: 305 RDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEVVRRRTEF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM                D
Sbjct: 365 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM----------------D 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D S          LS+ Q +AIL+LRL RLTGL R+ I +E   L   I +  DIL+ + 
Sbjct: 409 DYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  EL+ ++++    RRT +  G + ++EDED I  ED++VT++H GYVKR+P+ 
Sbjct: 459 RINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPVD 518

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +P     A+
Sbjct: 519 EFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQ 578

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F  I  +G  
Sbjct: 579 GIPIINLLDVDGKEKVTAVINVAQREDDLQK-DLFFVTRQGTVKRTLVTEFKNIRSNGIK 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG  L  GD 
Sbjct: 638 AINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGARLRDGDY 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +I  A                                   L  D  V             
Sbjct: 697 LIGAA----------------------------------PLNEDDQV------------- 709

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  V  ++ ++
Sbjct: 710 ------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTVQGDEDLM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAEST 909
           +V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +E+   D  E++
Sbjct: 762 VVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEAS 817


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
 gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
          Length = 866

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/887 (40%), Positives = 534/887 (60%), Gaps = 84/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM ++GV  +K + K A
Sbjct: 15  IKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVTPDKPHKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSVDGDP AA RYTE RL
Sbjct: 75  RIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAAAMRYTEARL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  GIAVGMATNIPTHNL
Sbjct: 135 SKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGMATNIPTHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ AY TGRGS+ +R    
Sbjct: 195 REVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRAYETGRGSVTVRSKVD 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +RDESD+ G R+ I++ 
Sbjct: 255 IETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQNGLRIAIDVG 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A++  + E++ RRT++
Sbjct: 315 RDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVAYLEHQREIIRRRTEF 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R               
Sbjct: 375 DLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQ------------- 421

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q +AIL++RL RLTGL R  I  E   L   I++  DIL+   
Sbjct: 422 -------------LSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPE 468

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II QELL + ++    RRT +  G +  +EDED I  E+++++++H GY+KR+  S
Sbjct: 469 RIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTS 528

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VYK K + +P    QA+
Sbjct: 529 EFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAK 588

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN+L L+ GER+  ++    D ++  + ++ F TK G V+R  +S+F  I + G  
Sbjct: 589 GIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKRTAVSEFTNIRQLGLR 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D ++SV     + +I++ +  G  V F  S +R   GR + GVRG++L   D 
Sbjct: 648 AINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GRTASGVRGMNLRDKDY 706

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +                       LI GD                          
Sbjct: 707 VVGADL-----------------------LIPGDN------------------------- 718

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G L  +  V+ ++ I+
Sbjct: 719 -----VLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--GPLAGLAVVSGDEDIM 771

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +D G +IR    ++ I  RAT GV +    +  +V ++ ++ + E
Sbjct: 772 ITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEE 818


>gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii]
          Length = 824

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/883 (40%), Positives = 529/883 (59%), Gaps = 91/883 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM +  +  N  + K A
Sbjct: 12  IKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENNMYANTAHKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 72  RIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  GIAVGMATNIP HNL
Sbjct: 132 SKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D   A +DNPDI +  LM+ ++GPDFPTG  ILG TG++ AY TG+G I +R    
Sbjct: 192 GEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQAYETGKGIIAVRAQHE 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +T  +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLRDES+R+G R+VIEL+
Sbjct: 252 IVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDESNRKGMRIVIELR 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  ++A + E++ RRT++
Sbjct: 311 KDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTHYIAHQIEIITRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  R H+L  L  A+ ++D V++II+ + +PE AR  L+                 
Sbjct: 371 DLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLI----------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E+Q R+I  ++L RLTGL  D I  E ++L  +I E   IL    
Sbjct: 414 ---------ATYDFTEIQARSIFTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDED 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             + IIK EL  +KD+ D PR + + +   LD+++ED I  ED VVTV++  Y+KR+ L 
Sbjct: 465 LKIEIIKSELQDIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDTVVTVTNNPYIKRMNLD 524

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G SGV + D+DFV  + + STH   LFF++LG V+K K + LP GS Q++
Sbjct: 525 EYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSK 584

Query: 615 GKALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           G  ++N L+   GE++   TTI  F  ++      Y+ F TK G V+R  ++++  I ++
Sbjct: 585 GVPIVNYLNFQPGEKLASFTTIKDFDAEDH-----YLNFVTKRGIVKRTHINNYKNIRQN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  ++      ILL    G+ + F  + IR   GR + GVRG+ +  
Sbjct: 640 GIIAISLREDDELLLTKSTNGHKHILLGASNGKAIHFLETDIRQI-GRTATGVRGMDIPD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            ++++  A+V                                       +E +I      
Sbjct: 699 DEEIVGFAVV-------------------------------------DGIEDDI------ 715

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                    L ++E  +GK TS  ++R+ N  GKG++  +V+  N  G L  +  V +++
Sbjct: 716 ---------LVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKN--GKLKTLRKVTNDE 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            II+VS +G  IR+P+++I    RAT+GV I +   D++V ++
Sbjct: 765 DIIVVSHRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTI 807


>gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
          Length = 916

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
 gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
          Length = 835

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/874 (40%), Positives = 533/874 (60%), Gaps = 84/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K ARI G+VMGK
Sbjct: 5   MRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGDVMGK 64

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQD+S R LL++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 65  YHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIALEMLR 124

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD + +EPVVL +R+PN+LVNG  GIAVGM TNIP HNL EV+ G   
Sbjct: 125 DINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVISGLHL 184

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NPD     LME I GPDFPTGA+++G++GI+ AY TG G++ +R    IE+ S  + 
Sbjct: 185 LMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAKVDIEEQSNGKS 244

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+V EIPY VNKA ++ +IA+L REK+I  I D+ DESDR+G R+ I+++R  S  V+L
Sbjct: 245 RIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSPSVVL 304

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T +QS F+ NM+A+    P+   L  IL+ ++  +E+V+ RRT + L KA+ RA
Sbjct: 305 NNLYKLTLMQSSFTFNMLAIVDGTPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKAQARA 364

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++D ++ IIR S + E A+  LM                          
Sbjct: 365 HILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYE---------------------- 402

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL R+ +  E       I +  DIL+   R+  II QE
Sbjct: 403 ----LSDKQAQAILDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSIIYQE 458

Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           LL ++++    RRT ++ G +L +EDED I  E++V+ ++H GY+KR+P S ++ QRRGG
Sbjct: 459 LLEIQEKFGDDRRTELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGG 518

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + D+DF+  L   STH  VLFF+++G VY+ K + +P     A+G  +IN+L 
Sbjct: 519 RGVQGMGVHDDDFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLD 578

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L++GE+I T++   + E   ++ ++ F T  G V+R  +++F  I ++G  A+ L   DE
Sbjct: 579 LSEGEKIQTVINV-DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLREGDE 637

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L+V       +I++ T  G  V F  +A+R   GR + GVRGI L   D  +   +   
Sbjct: 638 LLNVSITDGNQNIIIGTHGGYAVSFSENAVRQM-GRTASGVRGIRLRDDDYAVGSDV--- 693

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                          LK DS+V                     +
Sbjct: 694 -------------------------------LKPDSNV-------------------FVI 703

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SEKG+GK+T + D+ I  R GKGI+ +++++ N  G+L  +  V+  + I++++DKG +I
Sbjct: 704 SEKGYGKQTPASDYPIKGRGGKGIKTSNITEKN--GSLAGLTIVDGTEDIMVITDKGVMI 761

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           R  V  +    R+T GV + +   D +V ++ ++
Sbjct: 762 RFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKV 795


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 550/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
 gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
          Length = 854

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/885 (40%), Positives = 549/885 (62%), Gaps = 60/885 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   K + KCA
Sbjct: 8   IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEKPFRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  L++G GNFGS+D DPPAA RYTECRL
Sbjct: 68  RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMRYTECRL 127

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  +   LL D+  +TVDF  N+DGS +EPVVL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 128 RNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I NP+++   L++II GPDFPTG  ILGR+GI  AY TGRGSI +RGV+
Sbjct: 188 LGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQILGRSGIHEAYMTGRGSITMRGVA 247

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    +   +R+ I++T++PYQ NK+A++E+IA++V +KRI  I+D+RDESDR+G R+
Sbjct: 248 QIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDESDREGMRI 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A + V+LN +Y+ T +Q+ F  NM+AL   +P+  TL   L  F++FR E ++
Sbjct: 308 VIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGEPQLLTLKNFLTVFISFRVETII 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+KY L KA +R H+L GL IA+ +LD ++ IIR + +  TA+++L+ +          
Sbjct: 368 RRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQ---------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+VQ  AIL+++L RLT L  + I  E   L I+I    DI
Sbjct: 418 ----------------FELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIANLNDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS + R+  II++EL+ +K+   TPR T I+    ++ D D I  E  ++ ++  GY+KR
Sbjct: 462 LSKKERIEAIIEEELVQIKNIHGTPRCTEIIHDEGEIVDTDLIANEQAIILLTEQGYIKR 521

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + AQ+R  +G++G  +++ D V        H  VL FS  G VY    +++P  S
Sbjct: 522 MPVSSFDAQQRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSS 581

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG  ++ +LS+++ E+IT+I+   E +    ++++V  T+ G +++  LS F  I  
Sbjct: 582 RTSRGVPIVQMLSISKSEKITSIISVSEFKE---DIFLVMLTRQGYIKKTALSAFSNIRT 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L   D++  V    +E+ ++L T+LG  + F     ++   GR + GV+ + L
Sbjct: 639 NGLIAISLGEGDQLRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPLGRATRGVKSMRL 698

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D++ISM I                 +SAQ   ++   EE  S  N+  +E    E  
Sbjct: 699 KKKDELISMDI-----------------LSAQ---VTIGVEE--SQDNEEVLEIEPEELT 736

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +E  L   +IL ++ KG+GKR     FR+  R+G G+RA       +   L ++  VN 
Sbjct: 737 EKETSLGP-WILAITNKGYGKRIPITQFRLQRRAGMGVRAIKFKSGKD--NLTSLRVVNA 793

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            D++++VS++G +IR  V  I + SR+  GV +    +D+ + +V
Sbjct: 794 EDELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDDAIAAV 838


>gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 815

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV                          D  E+               
Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GKRT + ++ I +R   G++ T+V++ N  G LV V  V
Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 835

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/722 (45%), Positives = 478/722 (66%), Gaps = 31/722 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++E++   I    I  EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++++Y+A+ RMAQD+S+R +L++G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  +L DL K+TVDF PNYDG  +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG  A+I NP+I    L++ ++GPDFPT  +++G +GI+ AY TGRG+
Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R  + IE+ +G++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G
Sbjct: 242 VTMRARATIEE-NGNKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R  +  V+LN LY+ T +QS F +NM+AL   +P+   +  +L  ++  + E
Sbjct: 301 MRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  L++R       
Sbjct: 361 VIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS  Q +AIL++RL RLTGL RD I  E   L  +I E 
Sbjct: 414 -------------------FALSYEQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEY 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    +L II  EL  +K+     RRT I     ++ DED I RED++++++H GY
Sbjct: 455 KAILADEQLVLNIISDELNEIKERFGDERRTEITVSDEEILDEDLIPREDVIISITHTGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ YR+Q+RGGKG  G+  ++ DFV  LF+ +TH  +LFF++ G VY+ K + +P
Sbjct: 515 IKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG  +IN++ + QGE I  ++P    ES  +  Y+ FAT+ G V++  L D++ 
Sbjct: 575 DLSRTARGTPIINLIQIEQGETINAVIPV---ESFDSESYLFFATRQGIVKKTPLDDYMN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G IA+ +   DE++ V+      +I++ T  G  +RF    +R   GR++ GV+GI
Sbjct: 632 IRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSM-GRSATGVKGI 690

Query: 728 SL 729
            L
Sbjct: 691 QL 692



 Score = 41.6 bits (96), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF-VTDLFIVSTHTSVLFFSS 594
           E+ V+ V+  GY KR P+S YR Q RGGKG   + + D++  +  L +V     ++  ++
Sbjct: 707 ENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTA 766

Query: 595 LGFVYKEKVWRLPIGSPQARGKALIN 620
           LG + +  +  +       +G  LIN
Sbjct: 767 LGTLIRTSMEGISTMGRNTQGVKLIN 792


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +    +  Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A+                                  +K +  V       
Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV+   VE     + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4]
          Length = 844

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/905 (39%), Positives = 533/905 (58%), Gaps = 102/905 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V + + M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + KCA
Sbjct: 9   IHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+W+ R  L++G GNFGS DGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLL------------DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            K +  +              D+  D VDF PN+D + +EP VL ARYPN+LVNG  GIA
Sbjct: 129 SKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLVNGTTGIA 188

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIK 238
           VGMATNIP HNL E++     +IDN      + ++D L+EI++GPDFPTG VILG+ GI+
Sbjct: 189 VGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVILGKAGIE 248

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGR  I +R VS IE     + +IVVTE+PY VNKA ++E IA+LV++K+I  I D
Sbjct: 249 EAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDKKIDGITD 308

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDES R+G RV IEL+R  + ++ILNQLY++T LQ  F V M+AL   +P+   L  +L
Sbjct: 309 LRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALVNNQPKILNLKQML 368

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++  +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S +  +A+  LM
Sbjct: 369 VHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVNSAKATLM 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            LS+ Q +AI+++RL  LTGL RD I+ E +
Sbjct: 429 ER--------------------------FGLSDAQAQAIVDMRLRALTGLERDKIQKEYD 462

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L I I +   IL     LLG+IK E+  + D+    RRT I     D+  ED I   + 
Sbjct: 463 DLQILIGKLKAILGDEKILLGVIKTEITEIADKYGDDRRTSIGFDEFDISMEDMIPVTNT 522

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT + LGY+KR+    ++AQ RGGKG  G+   D+D+VT++ ++S+H  +LFF++ G V
Sbjct: 523 VVTFTKLGYIKRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLFFTNKGRV 582

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P  S  +RG A++NIL L   E+IT ++P    E    + Y+  AT  G V+
Sbjct: 583 YRIKAYEIPESSRTSRGIAIVNILQLQPDEKITAMIPI---EDYHEDKYLFMATADGFVK 639

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + K++++  I ++G  A+ L   D ++ V+    + D+++ TK GQ +RF  + +R   G
Sbjct: 640 KTKITEYDNIRKNGLTAITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSETEVRS-TG 698

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R ++GV G++L+  D++I M ++   ++                                
Sbjct: 699 RATMGVIGMNLSADDEIIGMQLISQGES-------------------------------- 726

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                ++TVSE G GK T   +F   +R GKG++   +++  + 
Sbjct: 727 ---------------------LMTVSENGLGKCTLMTEFNTIHRGGKGVKCYKITE--KT 763

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L+    V  +D+++L++  GT+IR+ V    + SR T GV +    ++ +++S+ ++R
Sbjct: 764 GNLIGAKAVEKDDEVMLINTAGTIIRIEVAGTTLLSRITSGVKLIDLKENTKLISIAKVR 823

Query: 899 ESEIV 903
           +S+ +
Sbjct: 824 KSDTI 828


>gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826]
 gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826]
          Length = 873

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/910 (41%), Positives = 540/910 (59%), Gaps = 132/910 (14%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I SV I D ++NSYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y+K A
Sbjct: 12  IASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMDNLGVGSRSAYMKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDAL RMAQ +S+R  +++GQGNFGS+DGD  AA RYTE R+
Sbjct: 72  RIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSIDGDSAAAMRYTEARM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 LL D+ KDTVDF PNYD    EP VL +R PN+L+NG  GIAVGMATNIP H+L
Sbjct: 132 TMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++DG + +++N +  L+ +ME I+GPDFPTG +I G+ GI  AY TGRG + +R  +H
Sbjct: 192 DELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKLRAKTH 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK   +++ IV+ E+PYQ NKA ++E+IAELV++K+I  I+++RDESD+ G RVVIELK
Sbjct: 252 IEKKP-NKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVRDESDKDGIRVVIELK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK F+  R+ V++RRT +
Sbjct: 311 RDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHRKTVIIRRTIF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +IR S +   AR  LM +               
Sbjct: 371 ELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSK--------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q  AIL++RL++LTGL R+ +  EL  L  EI    +IL S +
Sbjct: 416 -----------FNLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSET 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK+ELL +K++   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 465 LLENLIKEELLEIKNKFKVPRVTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+G
Sbjct: 525 YEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 584

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KA++N++ L   E+I  I+P  + DES      + F TK+G V+R  LS+F  I   G  
Sbjct: 585 KAVVNLIQLQPDEKIKAIIPTTDFDESKS----LAFFTKNGIVKRTNLSEFKNIRSVGVR 640

Query: 675 AMKLDSRDEI--------------------LSVE----------------TCTQEND--- 695
           A+ LD  DE+                    LSVE                +   E D   
Sbjct: 641 AISLDENDELVTALIAQTYDDMPVTDPENELSVESEVLEIEEIQNEIDEDSANAEEDTNS 700

Query: 696 -----ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYD 749
                + + TK G C++F IS +R   GR + GV GI   + GD+V+  A+         
Sbjct: 701 GDETMLFVVTKKGMCLKFKISKVRQM-GRTARGVTGIKFKEPGDEVVGAAV--------- 750

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                          +E N            +Q IL++S+KG G
Sbjct: 751 -------------------------------IESN------------DQEILSISQKGIG 767

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT++ ++R++NR GKG+    ++  +  G LV V  V++   ++ ++  G +IRV +  
Sbjct: 768 KRTTADEYRLTNRGGKGVICMKLT--SRTGDLVGVVMVDEEQDLMALTSSGKMIRVDMQS 825

Query: 870 IRIASRATKG 879
           IR A R T G
Sbjct: 826 IRKAGRNTSG 835



 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 505 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESF---FTSNTHDTLMFV 561

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V +     DE++ ++
Sbjct: 562 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAI 602


>gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 826

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/890 (40%), Positives = 536/890 (60%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL +RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ +++ DF+  L   STH ++LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                         G  +++            
Sbjct: 691 RGINLRPHDYVVGSGVL-------------------------GSNDQV------------ 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                           L +SEKG+GKRTS+ ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 714 ----------------LVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +N +  I++++  G +IR    ++    R+T GV +       +V S+
Sbjct: 756 IVINSSKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVDNGSQVASL 805


>gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 827

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVISIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++   DAD D+                                  
Sbjct: 691 RGINLRDHDYVVGSGVL---DAD-DQ---------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SE G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 713 ---------------VLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASL 805



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 33/284 (11%)

Query: 638 EDESSWNNLYVVFATKH-GNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEN 694
           EDE       ++    H G ++R  + +F   NR GK    M +   D I  +   +  +
Sbjct: 498 EDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHD 557

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDER 751
            +L  T  G+        I  + GR + G   V  + L KG++V ++ I +   AD D  
Sbjct: 558 MLLFFTNAGKVYSKKAYEIPEY-GRMAKGLPVVNLLQLEKGEKVQTV-INVPEGAD-DNY 614

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGF 808
           + ++  M   +R       E ++++N   +   +   +E    L    +Q IL  +  G+
Sbjct: 615 LFFITKMGTVKRT---HVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGY 671

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
               +  D R   R+  G+R  ++   + +   V    ++ +DQ++++S+ G   R P  
Sbjct: 672 AVTFNENDVRAMGRTAAGVRGINLRDHDYV---VGSGVLDADDQVLVISENGYGKRTPAA 728

Query: 869 EIRIASRATK---------------GVVIFSTAKDERVVSVERI 897
           E  +  R  K               GV++ S  KD  V++ + I
Sbjct: 729 EYPVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGI 772


>gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
          Length = 916

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/723 (45%), Positives = 474/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/899 (40%), Positives = 544/899 (60%), Gaps = 73/899 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           ++++I DEM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M Q+     + Y K AR
Sbjct: 6   STLNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YDAL R+AQD+++R  L++GQGNFGS+DGD PAA RYTE R+Q
Sbjct: 66  VVGDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEVRMQ 125

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL DL K TVD+ PNYD    EP VL  + PN+L+NG  GIAVGMATNIP HNL 
Sbjct: 126 KLASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPHNLT 185

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++D  +A+ID+P I +  L   ++GPDFPTG VILG  GI++AY TGRGS+ +R    I
Sbjct: 186 ELLDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGTAGIRSAYLTGRGSVKVRARCEI 245

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+    RE I+VTEIPYQVNK  ++E+IA LVR+K++  I+D++D SDR G R+ I++K+
Sbjct: 246 EEDKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWIQVKK 305

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +A ++LN+LY+ + LQ+ F VNM+A+   +PE   L   L+ F+  R  VV RR +Y 
Sbjct: 306 DHAAQIVLNKLYKMSDLQTSFGVNMIAIVNGRPEVLNLEKCLRHFIDHRRTVVTRRCRYE 365

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  R  ++ GL +AV ++D V+ +IR S +P+ A+ +LM    +       ++  + 
Sbjct: 366 LAKAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAEPLDG--FAKFLERCER 423

Query: 437 SSYTI--GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +  I   + G   L+E Q +AIL++RL RLTGL RD +  E   L   I E   IL+  
Sbjct: 424 PAEEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESILTDP 483

Query: 495 SRLLGIIKQELLSVKDELDTP---------------RRTRIVEGLLDMEDEDCIVREDMV 539
            +L+ +I++ELL+++ E   P               RRT ++   L+++  D +  E MV
Sbjct: 484 DKLMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVADESMV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V ++   YVKR+P   YR Q RGG G +SG    D+D + +LF  S H  VL F++ G V
Sbjct: 544 VMITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFTNTGRV 603

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           ++++V+  P+G+   R KAL+N L L +GE+I  ++ + E+E   ++ +VV A++ G ++
Sbjct: 604 FRKRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYREEEVD-DDHFVVLASRQGYIK 662

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  LS+F  I  SG IA  +   D ++  +      DI++ ++ GQ +RF  + +R   G
Sbjct: 663 RTSLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVRPM-G 721

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ L  GD+V+++ ++                                    D
Sbjct: 722 RTARGVRGMGLRDGDEVVNILVL------------------------------------D 745

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              EG +               LTV EKG+GKRT + ++R  +RSG G++   VS+ N  
Sbjct: 746 RENEGEVG-------------FLTVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERN-- 790

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G +V +  V + DQ+++V+ +G +IR PV  I    RAT+GV +     +E VV + R+
Sbjct: 791 GKVVGMVKVREADQLMVVTSQGKIIRTPVAGISELGRATQGVRLIRLNDEEVVVGLARV 849


>gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           35A]
          Length = 828

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/882 (41%), Positives = 544/882 (61%), Gaps = 95/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL R+ I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A GKA++N++SL   E+I   +   +  DE S     + F TK+G V+R  LS+F   N
Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634

Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           R  SG  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   GR + GV G
Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-GRTTRGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D V+   ++                         GD             +GN  
Sbjct: 694 IRLNENDFVVGAVVI-------------------------GD-------------DGN-- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L+VSE G GK+T +  +R  +R GKGI    +++  + G LV+V  
Sbjct: 714 ------------KLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759

Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886
           V+D N  +++++    +IRV + +I+    R T GV +  TA
Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801



 Score = 41.2 bits (95), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++++S KG+ KR     +   NR GKG  + +  + + I      F  N 
Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
           +D ++ +++KG L  + V +I  ASR   G   V + S A DE++++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601


>gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 804

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/890 (41%), Positives = 537/890 (60%), Gaps = 93/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M+Q G+  N+K+ K A
Sbjct: 4   VLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+ A+YDA+ R+AQDW+LR  L++GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  GVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TVDF+PN+DG+  EP VL A +PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  VA+ID P+I LD +M  + GPDFPTG   L + GI+ AYATGRGS+ +R    
Sbjct: 184 SEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGGR-LHKGGIREAYATGRGSLKLRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+ +G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DIA LRDESDRQG R+ IELK
Sbjct: 243 QEEKNG-RVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+LNQL+++T+LQ+ F+VNM+A+   +P    L+ +++ ++  R +VV RRT++
Sbjct: 302 RGANPDVVLNQLFKHTNLQTSFTVNMLAIVDGEPRVLPLLELMRHYLEHRRQVVTRRTRF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ NLDEV+ +IR S +   A+  L+ R               
Sbjct: 362 ELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIAR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+EVQ +AIL++RL RLTGL R+ I+ E   L   I     IL   +
Sbjct: 407 -----------FGLTEVQAQAILDMRLQRLTGLEREKIQAEHRELQETIAYLRAILEDEA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G++K+ELL+VK+     RRT I E       ED I  E MV+T++  G++KR PL  
Sbjct: 456 RLWGVVKEELLAVKERHGDTRRTVINEFAGGFNPEDLIEDEPMVITMTAAGFLKRTPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      +DED  T LF+ + H  +LFF++ G VY+EKV+ LP  S QARG
Sbjct: 516 YRAQGRGGVGVQASRSKDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671
             + +IL L + E + T++       S   L    + VFAT+ G +++  + ++  +  S
Sbjct: 576 VHIRSILPLAEDEEVATLL-------SVRGLTIPGHFVFATRRGLIKKTPIREYQNLTAS 628

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D ++ V    ++ +++L T+ GQ +RF ++ +R   GR S GVRG+ L  
Sbjct: 629 GLIAINLVDGDTLIQVGVAQEDAEVILATRNGQAIRFALTEVRA-TGRASQGVRGVRLKD 687

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+S+ +V                        +GD                       
Sbjct: 688 GDEVVSLIVVPKG--------------------WTGD----------------------- 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L V  +G+GKRT   ++    R G G+         ++G L A+  V  ++
Sbjct: 705 --------LLAVGTRGYGKRTPVEEYPTQGRGGLGV--LTFRSTPKVGQLAALLAVEGDE 754

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++++S +G  IR  V+++   SRAT GV I +  +++ + +   IR  +
Sbjct: 755 DLLVLSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRPQD 804


>gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 853

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/913 (38%), Positives = 538/913 (58%), Gaps = 113/913 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +  V I ++M+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM ++G   +K Y
Sbjct: 3   EQGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY  L R+AQ W++R  L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF+PN+D + +EPVVL AR PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D  VA I NP I ++ LM  I+ PDFPTG +I G  G++ A+ TGRG I+IR
Sbjct: 183 PHNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIYGYAGVREAFETGRGRIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE ++   ++IVVTEIPY VN+A +++ IA L  EK++  IA++ DESDRQG R+V
Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR  +A+VILN+LY+Y+ LQS FSVN VAL   +P    LI ++  FV  R EVV R
Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVKGRPRTLNLIDLISNFVEHRHEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA +RA +L GL I + NLDE ++IIR S  P  A+  L+ R           
Sbjct: 363 RTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q   ++ELRL +LT + +D +R E   L   I++  DIL
Sbjct: 412 ---------------FSLTERQAAYVVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + II+ EL+ +  +    RRT IV    DM  ED    + M++T+SH GY+KR 
Sbjct: 457 AKVERRMKIIEDELMELGSKFGDKRRTEIVYATEDMNPEDFYADDQMIITISHQGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ ++AQ RGG G  G   +DEDF+  ++  + H  +LFF+  G  Y  KV+ +P GS 
Sbjct: 517 ALAEFKAQNRGGVGSKGGATKDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSK 576

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   ++I   +     +D    +  Y+VF T++G +++  L  + +  
Sbjct: 577 TSKGRAVQNMLNIEADDKINAFIRVKNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V      ++I++  + G+ +RF  S +R   GR + GV  +++
Sbjct: 637 QNGVNAITIRENDQVIQVRLTDGNSEIVIANRQGRAIRFHESKVREM-GRTATGVNAMAI 695

Query: 730 --AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             A GD+V+ M  V  AD                                          
Sbjct: 696 DKANGDEVVGMVAV--AD------------------------------------------ 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYD------------------FRISNRSGKGIRA 829
                   K + +L VSEKG+GKR+   +                  +R++NR GKG++ 
Sbjct: 712 --------KTETVLVVSEKGYGKRSQLDELDENGNIKLDENGEPIAIYRVTNRGGKGVKT 763

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++++  + G LV++  V+D++ I++++  G  IR+ V++IR+  RAT+GV         
Sbjct: 764 MNITE--KTGKLVSIKLVDDSNDIMIINKSGMAIRMHVSDIRVMGRATQGV--------- 812

Query: 890 RVVSVERIRESEI 902
           R++++ER R  EI
Sbjct: 813 RLINLER-RNDEI 824


>gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1]
 gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
          Length = 815

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV                          D  E+               
Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GKRT + ++ I +R   G++ T+V++ N  G LV V  V
Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
 gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
          Length = 851

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/895 (39%), Positives = 536/895 (59%), Gaps = 91/895 (10%)

Query: 11  EEEKGI--TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           E+  GI    VSI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI++   ++   +N
Sbjct: 3   EQNSGIQQPQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELANSYN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD  AA 
Sbjct: 63  RPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ + A   L D+ K+TVDFRPNYD + QEP VL  + PN+L+NG  GIAVGMAT
Sbjct: 123 RYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE+ D    ++D+P   +  LME+++GPDFPT   +    G+ +AY TGRG++
Sbjct: 183 NIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGKGLSDAYHTGRGTV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG   +E+     + IV+ EIP+ +NK++++EKIA LV + +I  I+DLRDESDR+G 
Sbjct: 243 KVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDESDRKGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+LKRG   D+++N LY+YT L++ F +NM+A+   +P    L   L  FV  R EV
Sbjct: 303 RVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALSCFVDHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RRT+Y L KA  RAH+L GL IA+ ++DEVV +IR S +P+ AR  LMQR        
Sbjct: 363 VIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSEVQ RAIL++RL RLTGL R+++  E   L  +I+   
Sbjct: 415 ------------------FELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            +L +   L   +K+E+  +++   TPRRT ++ + L  ++ ED I  E++V+T+S  GY
Sbjct: 457 SVLENPEVLRSELKREIREIRETFATPRRTEVLTDALGGIDIEDLIPDEEVVITLSRRGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  Y+ Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P
Sbjct: 517 MKRTSLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            GS  A+G  + N+L L +GE +TT++    F ED+      Y +F TK G V+R+  S 
Sbjct: 577 EGSRTAKGVHINNLLPLEEGEWVTTVLAVREFAEDK------YFLFVTKRGMVKRSSASL 630

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +  +SG +A+ L   DE++ V    +++ I+L T  G  +RF    +R   GR + GV
Sbjct: 631 YARCRKSGLMAVGLREDDELVVVRPIREDSHIVLATADGYSIRFACKDVRPM-GRVATGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +GI+L + D V++  I+                                  +ND + E  
Sbjct: 690 KGIALRRQDVVVAGVIL---------------------------------KENDQTTE-- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+++S  GFGKRT    +R+ +R GKGI    V+  ++ G +V  
Sbjct: 715 ---------------IMSISANGFGKRTRVDLYRLQSRGGKGIINFKVT--SKTGPVVGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            PV DND +I+++    ++R+ V ++R   RAT GV++    +   VV  +R+ E
Sbjct: 758 MPVRDNDGLIMLTSANKVVRIGVEDVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 812


>gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 815

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 550/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 815

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
 gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 815

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92]
 gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92]
          Length = 873

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/925 (40%), Positives = 546/925 (59%), Gaps = 135/925 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I++ +++    I  V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENILNLNQD----IKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL +R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P H+L E++DG + ++DN +  L+ +M+ I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIFGKKGIMEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++R
Sbjct: 237 YRTGRGRVKVRAKTHIEKKP-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A +D++LN L++ T+++S F V M+A++  +P+ FTLI +LK 
Sbjct: 296 DESDREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIDNKEPKIFTLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++R+T + L KAR RAH+L GL IA+ N+DEV+ +IR S +  +AR  LM++
Sbjct: 356 FLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q+ AIL++RL++LTGL R+ + NEL  L
Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLDNELKEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK ELL +K +   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 LAEISRLDEILKSETLLENLIKDELLEIKSKFKVPRLTEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  +      N  + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLVQLQPEEKIKAIIPTTD---FAQNKSLAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEI---------------------LSVET---------- 689
            LS+F  I   G  A+ LD  DE+                     L VET          
Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEHGDEGVQPENLIDELGVETEINEIETIES 686

Query: 690 --------------CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQ 734
                          T E  + + TK G C++F +  +R   GR + GV GI    KGD+
Sbjct: 687 EIDEQSDENIDSIDDTDEKMLFIVTKKGMCLKFKLGKVRQM-GRTARGVTGIKFKEKGDE 745

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+  A++                                             E   QE  
Sbjct: 746 VVGAAVI---------------------------------------------ESNAQE-- 758

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL++S+KG GKRT++ ++R++NR GKG+    ++     G L+ V  V+D   ++
Sbjct: 759 -----ILSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--TRTGELIGVVMVDDEMDLM 811

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG 879
            ++  G +IRV +  IR A R T G
Sbjct: 812 ALTSSGKMIRVDMQSIRKAGRNTSG 836



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 505 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESF---FTSNTHDTLMFV 561

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +D+G L  + V +I   SR  KG  + +
Sbjct: 562 TDRGQLYWLKVYKIPEGSRTAKGKAVVN 589


>gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946]
 gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/885 (42%), Positives = 545/885 (61%), Gaps = 91/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +++I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  + +     Y K A
Sbjct: 11  IKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLAISSRSPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+  ++GQGNFGS+DGD  AA RYTE R+
Sbjct: 71  RIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSIDGDNAAAMRYTEARM 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL DL KDTVDF PNYD S  EP VL +R PN+L+NG  GIAVGMATNIP H L
Sbjct: 131 TPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHCL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++DG + +IDNP+  L+ +ME I+GPDFPT  +I G+ GI  AY TGRG + IR  +H
Sbjct: 191 DELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIFGKKGIIEAYRTGRGRVRIRAKTH 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G+++ IVV E+PYQVNK  ++E+I  LV+EK I  I+++RDESDR G R+VIELK
Sbjct: 251 IEK-KGNKDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIRDESDRDGIRLVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A +D++LN LY+ T+++  F V ++A++  +P+ FTLI +L+ F+  R+ V++RRT +
Sbjct: 310 REAMSDIVLNNLYKSTNMEVTFGVILLAIHNKEPKIFTLIELLQLFLRHRKTVIIRRTIF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ +AH+L GL IA+ N+DE++ +I+ S + ++A+  L++R               
Sbjct: 370 ELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIER--------------- 414

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ  AIL++RL RLTGL RD I NEL  L +EI+   DIL S +
Sbjct: 415 -----------FNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILRSEA 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK+ELL +KD+  + R T IV+   D++ ED I  E MVVT++H GY+KRVPL  
Sbjct: 464 LLNNLIKEELLELKDKFKSKRITEIVDDYDDIDVEDLIANEPMVVTITHRGYIKRVPLKQ 523

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F+  TH +++F +  G +Y  KV+++P GS  A+G
Sbjct: 524 YEKQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 583

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N++ L   E+I  I+P   F E +S      + F TK+G ++R  LS+F  I   G
Sbjct: 584 KAVVNLIQLQADEKIMAIIPTTDFDETKS------LAFFTKNGVIKRTNLSEFKNIRSVG 637

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ LD  D +++ +  TQE  ++ + TK G C+RF +   R   GR + GV GI   +
Sbjct: 638 VRAITLDDDDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREI-GRTARGVTGIRFKE 696

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            +  +  A V++ D                                              
Sbjct: 697 ENDCVVGAAVIYND---------------------------------------------- 710

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                ++ +LTV+EKG GKRT++ ++R+ NR GKG+ A  ++   +   LV V  V+++ 
Sbjct: 711 -----QEELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTP--KTADLVGVVIVDEDK 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            ++ ++  G +IRV +  IR A R T GV + S    + V S+ R
Sbjct: 764 DLMALTSSGKMIRVDMETIRKAGRNTSGVKVVSVEGKDVVQSLAR 808


>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
 gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
          Length = 836

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/888 (40%), Positives = 534/888 (60%), Gaps = 97/888 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+  ++ Y KCA   G V+G+
Sbjct: 15  MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A++YDAL R+AQ +SLR  L++G GNFGSVDGDPPAA RYTE ++ K A  +L 
Sbjct: 75  YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMAKMAVNMLT 134

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD   QEP VL +R+PN+L NG  GIAVGMATNIP HNL EV++G   
Sbjct: 135 DIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIPPHNLHEVIEGMKI 194

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           VI NPD  LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I +R  + IE+  G R 
Sbjct: 195 VIQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKITLRSKTSIEEIKG-RN 253

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVVTEIPY VNKA ++E IA LV++KR+  I DLRDE+ R G R+VIELK+ A+  V+L
Sbjct: 254 CIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIVIELKKDANPQVVL 313

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+L+ YT LQ    V ++AL    P+  TL  IL+ ++ F+  V+ RRT++ L KA++R 
Sbjct: 314 NKLFSYTQLQDSVGVILLALVNGIPKILTLKQILQEYIDFQVSVIRRRTEFDLKKAKERE 373

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+DEV+ I++ S +   A+++L  R                        
Sbjct: 374 HILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFG---------------------- 411

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L++VQ   I ++ L RLTG+ R  I +EL  +   + +  DIL++  R+  II +E
Sbjct: 412 ----LTDVQADHIAQMTLGRLTGMERQKIIDELAEITATVADLEDILANEQRVFDIIIEE 467

Query: 505 LLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           + +++++    RRT+I  V G +D+  ED I  E+ VVT +++GY+KR+P+SVY+AQ RG
Sbjct: 468 VEAIQEKFGDERRTQIENVSGEVDI--EDLIPVEESVVTYTNVGYIKRMPISVYKAQNRG 525

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG +G+  R++D +T++ + S+H ++LF ++ G  YK K + LP GS  +RG  + N+L
Sbjct: 526 GKGVTGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSKASRGVNIKNLL 585

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L+    I  ++     E   ++ Y+V  TK G ++R  LS +  + ++G IA+ LD  D
Sbjct: 586 ELSDDNLIAAMIKV---EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNGLIAIGLDEGD 642

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI  V     +N++L+ T  G  +R   + +RV + R + GVR I L +GD V+SMA   
Sbjct: 643 EIAGVRLTGGQNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLREGDYVVSMA--- 698

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                               R+  G T                              +LT
Sbjct: 699 --------------------RIREGAT------------------------------VLT 708

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           VSE G G+R +  ++ I +R G G+    ++  N  G +  +  V++ D II++S  G +
Sbjct: 709 VSETGLGRRVALENYPIRHRGGHGV----LNYKN--GEVCGIKVVDEEDDIIMISSDGIV 762

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IR+   +I +  R ++GV +   A + +VV+  R   +E  DEAE  E
Sbjct: 763 IRLRACDISVMGRYSRGVRLMKVAGENKVVTFTR---TEHDDEAEIAE 807


>gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 848

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/891 (40%), Positives = 543/891 (60%), Gaps = 84/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K + K A
Sbjct: 9   IKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGM TNIPTHNL
Sbjct: 129 SKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNIPTHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG++ +R    
Sbjct: 189 AEVISALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVTVRAKVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +EQIVVTE+PY VNKA ++E+I+EL R+K+I  I  +RDESDR+G R+ I+++
Sbjct: 249 IEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLRISIDVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA VILN LY+ T LQ+ FS NM+A++   P+  +L  IL A++A + EV+ RRT +
Sbjct: 309 RDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVIRRRTVF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+                 
Sbjct: 369 ELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            + Y         LS+ Q +AIL++RL RLTGL RD I  E   L   I +  DIL+   
Sbjct: 412 -NGYA--------LSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  ELL ++ +    RRT +  G +L +EDED I  ED++VT+++ GY+KRV   
Sbjct: 463 RVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYIKRVATG 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P    QA+
Sbjct: 523 EFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L+    E+I T++     E+  +N Y+ F T+ G V+R  + +F  I  +G  
Sbjct: 583 GIPVVNLLNFEGNEKIQTVINV-RGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLK 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+LSV+      +I++ T  G  V F  + +RV  GR++ GVRGI L +GD 
Sbjct: 642 ALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIRLREGDL 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +                                  L+ D +V             
Sbjct: 701 VVGSDV----------------------------------LEKDHNV------------- 713

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+  + I+
Sbjct: 714 ------LIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVSGQEDIM 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           + + +G +IR  V+ +    RAT GV +     + +V ++ ++   E++++
Sbjct: 766 VTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816


>gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
 gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
          Length = 815

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
 gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
          Length = 815

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV                          D  E+               
Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
 gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
          Length = 826

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/902 (40%), Positives = 545/902 (60%), Gaps = 86/902 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT++ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DILS   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILSKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRAAKGLPVVNLLQLEKGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   I L AD   D+ +                                
Sbjct: 691 RGINLREHDYVVGSGI-LGAD---DQVLV------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ISE+                  G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 716 ISEK------------------GYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +N N+ +++++  G +IR  ++++    R+T GV +   + D +V S+  +   E  D
Sbjct: 756 TIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQD 815

Query: 905 EA 906
           + 
Sbjct: 816 QT 817


>gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 815

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
 gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
          Length = 838

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/895 (40%), Positives = 544/895 (60%), Gaps = 89/895 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V++++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM +MGV  +K Y K ARI 
Sbjct: 15  VNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMNEMGVTPDKPYKKSARIV 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSVDGD  AA RYTE R+ K 
Sbjct: 75  GDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYTEARMSKI 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDTVDF+ NY    +EPV L +R+PNVLVNG  GIAVGMATNIP HNLGE 
Sbjct: 135 AMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAAGIAVGMATNIPPHNLGET 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D    ++ NPD+ ++ LME + GPDFPTG +++G++GI+ AY TG+G I++R    IE+
Sbjct: 195 IDALSLLMKNPDVSVNELMEALPGPDFPTGGIVMGKSGIRKAYQTGKGKIIVRSRVEIEQ 254

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + D+E+IVVTEIPY VNKA ++E+IAEL REK+I  I  + DES R+G R+V+E++R  
Sbjct: 255 MAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVADESGREGMRIVVEVRRDT 314

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           SA+V+LN LY+YT+LQ  F  NM+A++   P+  +L  IL  ++ ++ EV+ RRT++   
Sbjct: 315 SANVVLNNLYKYTALQVTFGFNMLAIDKGVPKIMSLKEILTKYLEYQIEVIRRRTEFEKR 374

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA DRAH+L GL  A+  +DE++ IIR S + E A+ +L++R                  
Sbjct: 375 KAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIER------------------ 416

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      S +Q +AIL++RLARLTGL R+ I  E N L   I+   +ILSS + ++
Sbjct: 417 --------FEFSPIQAQAILDMRLARLTGLEREKIEAEYNDLMELIRRLTEILSSEANIM 468

Query: 499 GIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            II+ EL  +K+     RRT +  G L  +EDED I  ED+++ ++  GY+KR+    ++
Sbjct: 469 AIIEDELADIKNRFPGERRTELRVGELTSIEDEDLIEEEDVLIALTSNGYIKRMTQDEFQ 528

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG+G  G+ M D D +  L   STH S+LFF++ G VY+ K + +P     A+G  
Sbjct: 529 VQNRGGRGVKGMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVYQSKGYDIPEYGRTAKGIP 588

Query: 618 LINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           ++N+L++ + E +  I+   P DE      Y+ F TK+G V+R+ +S +  I  +G IA+
Sbjct: 589 VVNLLNIEKEEYVKEIIVLHPSDEDQ----YLFFVTKNGIVKRSDVSAYANIRNNGLIAL 644

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +   DE+++V     + +I++ +  G  + F  +  R+  GR + GVRG+ L +GD V+
Sbjct: 645 NMREDDELINVLVTNGQQNIIIGSHNGYAMTFAETDARIM-GRTATGVRGMKLREGDYVV 703

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
             A++                                      + E N+           
Sbjct: 704 GAAVL--------------------------------------NPESNV----------- 714

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
               L V+E+G+GK+T + ++ + NR GKGI+ +++S   + G L  +     ++ ++++
Sbjct: 715 ----LVVTERGYGKQTPASEYAVKNRGGKGIKTSNISA--KSGQLAGIVSTEGDEDLMVM 768

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910
           +D+G +IR  +  I + SRAT GV +       +V S+ +I +  E   E   TE
Sbjct: 769 TDQGVVIRFNIASISVTSRATLGVKMIRLDDGAKVSSITKIMKTGEETQELAETE 823


>gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 815

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 827

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NSYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++   DAD D+                                  
Sbjct: 691 RGINLRDHDYVVGSGVL---DAD-DQ---------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 713 ---------------VLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASL 805


>gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 869

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/891 (40%), Positives = 528/891 (59%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E  I  + I  EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M +MG  +++
Sbjct: 2   EDIEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQ 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K A+  GEV+ KYHPHG++A+Y  L R+AQ W+LR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E +DGCVA ID    +++  LM  I+ PDFPTG  I G  G+K A+ TGRG I
Sbjct: 182 MAPHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIYGYAGVKEAFETGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307
           V+R  + IE  S  RE I+VTEIPYQVNKA ++  IA+LV E+RI  I+++ DES  + G
Sbjct: 242 VLRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A+A V+LN L++ T LQS F+VN +AL   +P    L  ++  FV  R +
Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+ + L KAR+RAH+L GL IAV N+DEV+ IIR S N + A+  L +R       
Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q RAI+++RL  LTGL  D +R E + L   I+  
Sbjct: 415 -------------------FELSELQARAIVDMRLRALTGLESDKLRAEFDELMKTIQYL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             +L+  + L+ ++K ELL VK++   PRRT IV    +   ED    ++M++T+SHLGY
Sbjct: 456 EGLLADDNLLMQVVKDELLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR PL  +R+Q RGG G  G   R+EDF+  ++  S H ++L F++ G  +   V+++P
Sbjct: 516 IKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIP 575

Query: 608 IGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            G+   +G+A+ NIL++   +RIT    I    +D     + Y+VFAT  G +++  L  
Sbjct: 576 EGAKSTKGRAIQNILNIEADDRITACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +      G  A+KL+  D ++SV     + +ILL  K G+ +RFP S +R   GR + GV
Sbjct: 636 YSNPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSM-GRVTTGV 694

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G +   + +V   D +                                     
Sbjct: 695 RGMILDEGGEDAIVGMVALKDPE------------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       ++ IL VSE G+GKRT+   +RI+NR GKG++   +++  + G+LV  
Sbjct: 718 ------------KETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITE--KTGSLVDF 763

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSV 894
             V D   +++++  G  IR+P++ I +  RAT+GV + + +++ + + SV
Sbjct: 764 RSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGVKLINLSSRGDEIASV 814



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++ I+T+S  G+ KRT   DFR   R G G +    S   E   +  ++  + +  ++L 
Sbjct: 504 DEMIITISHLGYIKRTPLRDFRSQARGGVGSKG---STTREEDFIEYIYSASMHATLLLF 560

Query: 857 SDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
           + KG    +PV +I   +++TKG     I +   D+R+ +  RI++
Sbjct: 561 TTKGRCFWLPVYKIPEGAKSTKGRAIQNILNIEADDRITACIRIKK 606



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 52/269 (19%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQEN 694
           PED  + + + ++  +  G ++R  L DF    R G  +    +R+E  I  + + +   
Sbjct: 497 PEDFYADDEM-IITISHLGYIKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHA 555

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            +LL T  G+C   P+  I            G    KG  + +   +L+ +AD     C 
Sbjct: 556 TLLLFTTKGRCFWLPVYKI----------PEGAKSTKGRAIQN---ILNIEADDRITACI 602

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                            I  L+ D                +   +++  + +G  K+T  
Sbjct: 603 ----------------RIKKLQKDPEF-------------VASHYLVFATLQGMIKKTPL 633

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +  SN   KG+ A    K+NE  ++V+V   N   +I+L +  G  IR P +++R   
Sbjct: 634 EAY--SNPRSKGVFAI---KLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSMG 688

Query: 875 RATKGV--VIFSTAKDERVVSVERIRESE 901
           R T GV  +I     ++ +V +  +++ E
Sbjct: 689 RVTTGVRGMILDEGGEDAIVGMVALKDPE 717


>gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
 gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
          Length = 815

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV     D+ E                                     
Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/723 (45%), Positives = 474/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 848

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/891 (40%), Positives = 543/891 (60%), Gaps = 84/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K + K A
Sbjct: 9   IKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGM TNIPTHNL
Sbjct: 129 SKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNIPTHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG++ +R    
Sbjct: 189 AEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVTVRAKVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +EQIVVTE+PY VNKA ++E+I+EL R+K+I  I  +RDESDR+G R+ I+++
Sbjct: 249 IEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLRISIDVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R ASA VILN LY+ T LQ+ FS NM+A++   P+  +L  IL A++A + EV+ RRT +
Sbjct: 309 RDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVIRRRTVF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+                 
Sbjct: 369 ELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            + Y         LS+ Q +AIL++RL RLTGL RD I  E   L   I +  DIL+   
Sbjct: 412 -NGYA--------LSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  ELL ++ +    RRT +  G +L +EDED I  ED++VT+++ GY+KRV   
Sbjct: 463 RVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYIKRVATG 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P    QA+
Sbjct: 523 EFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L+    E+I T++     E+  +N Y+ F T+ G V+R  + +F  I  +G  
Sbjct: 583 GIPVVNLLNFEGNEKIQTVINV-RGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLK 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+LSV+      +I++ T  G  V F  + +RV  GR++ GVRGI L +GD 
Sbjct: 642 ALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIRLREGDL 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +                                  L+ D +V             
Sbjct: 701 VVGSDV----------------------------------LEKDHNV------------- 713

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+  + I+
Sbjct: 714 ------LIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVSGQEDIM 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           + + +G +IR  V+ +    RAT GV +     + +V ++ ++   E++++
Sbjct: 766 VTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816


>gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 827

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/890 (40%), Positives = 538/890 (60%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEKDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++   DAD D+                                  
Sbjct: 691 RGINLRDHDYVVGSGVL---DAD-DQ---------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SE G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 713 ---------------VLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASL 805


>gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 815

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 3   NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+I
Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G 
Sbjct: 243 VVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E +
Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R        
Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L  +I +  
Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H GY
Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F  
Sbjct: 577 EYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRGI
Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+  +IV                          D  E+               
Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  V
Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +
Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811


>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
          Length = 856

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/729 (43%), Positives = 491/729 (67%), Gaps = 36/729 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q+G++ +K Y KCA
Sbjct: 13  IIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGLDPSKPYHKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              G+V+G YHPHG+A++YDA+ R+AQD+S+R +L++G GNFGSVDGDPPAA RYTE R+
Sbjct: 73  DTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPPAAYRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVDF  NYD   +EP VL +R+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 133 SKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVGMATEIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    +IDNPD +L  +ME + GPDFPTG +I+GR+GI+ AYATGRG I +R  + 
Sbjct: 193 GETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIMGRSGIRAAYATGRGKITVRAKTE 252

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +    R +I+VTE+PY+VNKA ++E IA+LV++KRI  I+++ D SDR+G  + I++K
Sbjct: 253 IIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSDRKGMHIEIDIK 312

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS  ++LNQL+ YT LQ+ F   M+++   +P+  +L  +L+ ++ F+ EV+ RRT +
Sbjct: 313 RDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGEPKILSLKEMLQCYIEFQAEVIRRRTDF 372

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDRAH+L GL IA+  +DEV++IIR S +  +A+  LM+R               
Sbjct: 373 DLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMER--------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L +VQ +AI+++RL +LT + +  I +E+ +L  +I+E L+IL+S  
Sbjct: 418 -----------FGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEP 466

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R L I+K+E++ ++++   PRRT I  V G +D+  ED I +E+ V+T++  GYVKR+  
Sbjct: 467 RQLEIVKEEIMQIRNKYADPRRTEICAVSGEVDI--EDLIPQEECVLTLTQFGYVKRLSA 524

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+ QRRGG+G SG+  R+ED   ++F++++H  VLFF+  G VY+ K + +P GS Q+
Sbjct: 525 DTYKIQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQS 584

Query: 614 RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N++ ++  E++T+++  PE DE      Y+V  T+ G ++R +L+ +    + G
Sbjct: 585 KGVNIANLIPISPDEKVTSMIRVPEFDEEK----YLVMVTRQGIIKRIELNAYNTSRKGG 640

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA++L+  DE+  V      + +++ TK G  +RF  + IR   GR + GV+ ++L +G
Sbjct: 641 LIALELNEGDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAM-GRQARGVKAMALKEG 699

Query: 733 DQVISMAIV 741
           D V+ M++V
Sbjct: 700 DCVVGMSVV 708



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 126/280 (45%), Gaps = 59/280 (21%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK-------IAMKLDSR-DEILSVETCTQENDILL 698
           YV+F T  G V R K  +  + +R  K       I +  D +   ++ V    +E  +++
Sbjct: 559 YVLFFTDKGRVYRLKCYEVPEGSRQSKGVNIANLIPISPDEKVTSMIRVPEFDEEKYLVM 618

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T+ G   R  ++A   +      G+  + L +GD++                       
Sbjct: 619 VTRQGIIKRIELNA---YNTSRKGGLIALELNEGDEL----------------------- 652

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERC--------QELKLKE------------- 797
            A  R+  G+++ I + K   ++  N ++ R         + + LKE             
Sbjct: 653 -AWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEGDCVVGMSVVREG 711

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +LTVSE G+G+ +S  D+R+ +R GKG+      K  ++ A+     VN +D II++S
Sbjct: 712 GLVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHTEKYGDVAAIKV---VNLDDDIIIIS 768

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++G +IR+    IR+ +R +KGV +     D+RVV++ R+
Sbjct: 769 EEGIIIRIAAESIRVCARPSKGVTVMKVNGDDRVVTIARV 808



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 18/158 (11%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKND---------SSVEGNISEERCQELKLKEQFILTVS 804
           Y++ ++++ R +    EEI  ++N           +V G +     ++L  +E+ +LT++
Sbjct: 458 YLEILASEPRQLEIVKEEIMQIRNKYADPRRTEICAVSGEVD---IEDLIPQEECVLTLT 514

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G+ KR S+  ++I  R G+G+      +  +I A   +F +N +D ++  +DKG + R
Sbjct: 515 QFGYVKRLSADTYKIQRRGGRGVSGMS-RREEDIAA--EMFVINSHDYVLFFTDKGRVYR 571

Query: 865 VPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
           +   E+   SR +KGV I      + DE+V S+ R+ E
Sbjct: 572 LKCYEVPEGSRQSKGVNIANLIPISPDEKVTSMIRVPE 609


>gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A
 gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 916

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/723 (44%), Positives = 473/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE+IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+    A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTM----------YLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G +          YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 916

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/723 (45%), Positives = 473/723 (65%), Gaps = 21/723 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG      YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+    FPED+     
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ 
Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714

Query: 706 VRF 708
           +RF
Sbjct: 715 IRF 717



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604
           G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG   +  + W
Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721

Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630
                                          LP G     P  RG   +  + L    +I
Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781

Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
            +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    R+  L  
Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839

Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  +   V+
Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906


>gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis]
          Length = 887

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/902 (39%), Positives = 539/902 (59%), Gaps = 87/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE   G+  V+++ EMQNS+L YA++VI+ RAIPD RDGLKPVHRRIL+GM  +G+  + 
Sbjct: 58  EEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHHSS 117

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG+A++Y+A+ RMAQ++S+R  L++G GNFGS+DGDP AA R
Sbjct: 118 AFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAAMR 177

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L+ + K+TV+F PNYD S  EP VL +R+PN+LV GG GIAVGMAT 
Sbjct: 178 YTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMATT 237

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HNL E +   +A   NP I L  LME I+GPDFPTG +ILG  GI +A+ TG+GSI 
Sbjct: 238 IAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTKGIIDAFETGKGSIS 297

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  S  + +I+V+EIPY V K  ++EKIA LV+EK I  I+DLRDE++R+G R
Sbjct: 298 IRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRKGIR 357

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+    +V+LN+L++ T+LQ  F+VNMVAL   +P+  +L   L+ ++  ++E+V
Sbjct: 358 IVIEVKKNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGEPKLLSLKDALRVYLDHQKEIV 417

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR K+ L K+  R H+L GL IAV+N+DEV+RIIR S     A+ +L Q+         
Sbjct: 418 IRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQK--------- 468

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+QT+AI+E+RL RLTGL  + +  E+  L I I    +
Sbjct: 469 -----------------FSLSEIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKE 511

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S  +L+ +I +EL  +K++    R T+I    + ++ DED I   ++ +  S  GYV
Sbjct: 512 ILNSEQKLIDLIVEELEEIKEKYGDKRLTQIDSYAIANISDEDLIPERNIAIIQSVKGYV 571

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ LS Y+ Q RGG G S     ++D +  +   +THT +L F+S   VY+ +  ++P 
Sbjct: 572 KRINLSEYKVQNRGGVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPE 631

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G   IN++ + + E + +I+P    ++  +  ++V  T++G +++ K+  F +I
Sbjct: 632 SSKQSKGIPFINLIQIEKDEEVVSILP---AQNYDDGKFLVTLTQNGLIKKTKIEHFQRI 688

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GKIAM +   D+++       + +I++ +  G+ VRF +S +R   GR S GVR I 
Sbjct: 689 NTNGKIAMVILENDKLVRAMILNNDEEIIVGSSEGKIVRFDLSEVR-DTGRKSAGVRAIK 747

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA   + IS++                                       +S EG     
Sbjct: 748 LAPKHKAISLS---------------------------------------ASSEG----- 763

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++ ++   GFGK+T   D+R + R+ KG+      K+++ G LV    V 
Sbjct: 764 ---------KYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITI---KVDKAGKLVHSGFVE 811

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ II+++ KG  IR  + ++   SR+TKGV I    KDE++ S+  I  ++I +E   
Sbjct: 812 GSEDIIILNSKGIAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTLINVNKIDEEISK 871

Query: 909 TE 910
           T+
Sbjct: 872 TQ 873


>gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
 gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
          Length = 850

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/884 (40%), Positives = 534/884 (60%), Gaps = 86/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EM+ SY+ Y+++VI+ RA+PD+RDG KPV RRIL+ MM +G   +K Y+K A
Sbjct: 7   IIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAYMKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  GEV+GKYHPHG+++IY AL RMAQDW+LR  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 67  RTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYTESRM 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 ++ DL K+TVD + N+D   +EP VL  R PN LVNG  GIAVGMATN+PTHNL
Sbjct: 127 SLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVPTHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGCVA IDNP+ID++ LME I+ PDFPTGA I+G  G+++AY TG G I++R  + 
Sbjct: 187 SEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIMGLQGVRSAYETGHGRIILRAKTE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE      + IVV EIPY VNKA +++ IA LV EKRI  I+D+ DESDR+G R+VIE+K
Sbjct: 247 IE-NGPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIVIEVK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+V+LN+L++ T+LQS F+VN V L   +P+  +L   ++ FV  R EVV+RRTKY
Sbjct: 306 RDANANVLLNKLFKMTALQSSFAVNCVGLVHGRPKVLSLKDCIRTFVDHRHEVVIRRTKY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH+L GL IA  N+DEVVR+IR S  P  A   L +R               
Sbjct: 366 DLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKR--------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L ++Q +AI+++RLA+LT + +D +  E   L  +I     IL+   
Sbjct: 411 -----------FELDDIQAKAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRILTDDE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
               ++K EL  VK++    RRT I     +   ED    +++++T+SHLGY+KR PL+ 
Sbjct: 460 LCRQVMKDELNEVKEKYGDVRRTEIKLSAEEFNPEDFYADDEVIITISHLGYIKRTPLAE 519

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGG G  G   RD DF+  ++  + H ++LFF++ G  Y  KV+ LP G+  A+G
Sbjct: 520 FRAQGRGGVGSRGGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAKNAKG 579

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +A+ N+L++   + +   +   + ++  +N + YVVF T  G +++  L ++ +   +G 
Sbjct: 580 RAIQNMLNIEADDSVNAFLYIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPRTNGV 639

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
            A+ +   D ++SV     ++++++  + G+ +RF   A+R   GR S GVRGI L +  
Sbjct: 640 KAITIREEDRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTM-GRVSTGVRGIRLDEDG 698

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQ + M  +                                   ND             
Sbjct: 699 EDQAVGMVCI-----------------------------------NDP------------ 711

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               +++ I+ VS++GFGKR++  D+R +NR GKG++   ++  ++ G + A+  V D++
Sbjct: 712 ----EKETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLT--DKTGKVAAIKSVTDDN 765

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSV 894
            +++++  G  +R+ V ++R+  RAT+GV + + T +++ + SV
Sbjct: 766 DLMIINRSGITLRLKVADVRVMGRATQGVKLINLTKRNDSISSV 809


>gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1]
 gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1]
          Length = 826

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/902 (40%), Positives = 544/902 (60%), Gaps = 86/902 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT++ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEN---ADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFSENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+    VL AD   D+ +                                
Sbjct: 691 RGINLRENDYVVGSG-VLGAD---DQVLV------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ISE                  KG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 716 ISE------------------KGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +N N+ +++++  G +IR  + ++    R+T GV +       +V S+  +   E  D
Sbjct: 756 TIINSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDGSQVASLTIVPTEEEQD 815

Query: 905 EA 906
           + 
Sbjct: 816 QT 817


>gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
 gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
          Length = 625

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/633 (51%), Positives = 433/633 (68%), Gaps = 32/633 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I +EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K A
Sbjct: 8   VLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++++YDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R+
Sbjct: 68  RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+ KDTVDF PNYD S +EP VL A+ PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +IDNP++ +  LM  I+GPDFPTG +ILGR GIK AY TGRG I +R  + 
Sbjct: 188 GEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLILGRDGIKQAYTTGRGVIKMRAQAR 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +EK S  + +IVVTEIPYQVNKA ++E IA LVR+K I  I DLRDESDR G RVVIEL+
Sbjct: 248 VEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIELR 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  +ADVILNQLY++T LQ  F V M+AL   +P    L  +L  ++  +++V++RRTK+
Sbjct: 308 RDVNADVILNQLYKHTQLQETFGVIMLALVDGRPRILNLRDMLHYYLEHQKDVIIRRTKF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ +LDEV+  IR S  PE AR  L+ +               
Sbjct: 368 ELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAK--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSSR 494
                        LSE Q +AIL++RL RLTGL R+ I  E   + +E  E L+ +L+  
Sbjct: 413 -----------FALSEKQAQAILDMRLQRLTGLEREKIEEEYKDV-LETIEWLEAVLADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +++GIIK ELL VK      RRT I   +  +E ED I  ED+V+T++H GYVKR+P+ 
Sbjct: 461 RKVMGIIKDELLDVKKRFGDARRTVITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVD 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G +G+  ++EDFV  LF+ +TH ++LFF++ G VY+ K + LP     A+
Sbjct: 521 TYRSQRRGGRGVTGMGTKEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAK 580

Query: 615 GKALINILSLNQGERITTIMPF----PEDESSW 643
           G A+IN+L + + E+IT ++P     P D SSW
Sbjct: 581 GSAIINLLPMEKDEKITAVIPIKDSAPTDISSW 613



 Score = 45.1 bits (105), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +  ++S+   ++L   E  ++T++ +G+ KR     +R   R G+G+      + + +  
Sbjct: 486 ITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEEDFVEH 545

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERI 897
           L   F    +  I+  ++KG + R+   E+  A R  KG  I       KDE++ +V  I
Sbjct: 546 L---FVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKITAVIPI 602

Query: 898 RESEIVD 904
           ++S   D
Sbjct: 603 KDSAPTD 609


>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 812

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/891 (39%), Positives = 537/891 (60%), Gaps = 90/891 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I S  +  +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +K +
Sbjct: 4   QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+Y++  RMAQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 64  RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG  GIAVGMATNIP
Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +HNLGEVVDG  A+IDNP+I +D LM  ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R
Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ S  + +IVVTEIPYQVNKA ++E IAEL ++K I  I  LRDESDR G R+V
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN L+++T L+  F   M++L    P   +L  ++  ++  +EEV+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S     A+  LM +           
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL RLTGL R+ I ++   +   I    D+L
Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S R++++ ++K EL+ +K++    RRT+  +     +  D +  E M +TV+   Y+KR+
Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R QR+GG+G SG+ M+D+D+V  +   STH  +LFF+  G VY + V   P+ S 
Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            ARG ALIN + +L + ER+T ++    D S+    Y++  T++G V++  + ++  IN+
Sbjct: 578 TARGSALINFIPTLEKDERVTEML--DPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA++L+  D ++ V     + D++L T+ G  +RF I+   + A GR + GV GI L
Sbjct: 636 NGIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRAVGRVAAGVHGIKL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + GD+V+   I        DE+  +                                   
Sbjct: 696 STGDEVVGAVIA-------DEKDIF----------------------------------- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                       T+S  G  KR     + +  R+GKG+R  +  +  E+ ALVA    +D
Sbjct: 714 ------------TISADGNAKRNKESAYHVQGRNGKGVR--NFKRGFEVVALVA---ADD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE 899
           ND+++ VS+ G  I+   ++I    ++A +GV++    + +R+ S++ + E
Sbjct: 757 NDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVVPE 807



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E   +TV++  + KR  S D RI  + G+G+      K+ +   +  +   + +++++  
Sbjct: 502 EPMTITVTKHNYIKRMESSDIRIQRKGGRGVSGM---KMKDDDYVWKIMNTSTHNRLLFF 558

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIF----STAKDERVVSVERIRESEIVDEAESTE 910
           +D+G +    V E  ++SR  +G  +     +  KDERV        +E++D   STE
Sbjct: 559 TDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKDERV--------TEMLDPDMSTE 608


>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 816

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/888 (40%), Positives = 528/888 (59%), Gaps = 86/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+   K Y K A
Sbjct: 10  VLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKPYKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGD PAA RYTE R+
Sbjct: 70  RIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRYTEVRM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ KDTVDF PNYD S +EP VL ++ P +L+NG  GIAVGMATNIP HNL
Sbjct: 130 AKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+G V +IDNPD+++  LM  I+GPDFPTGA ILG+ GI +AY TGRG + IR  + 
Sbjct: 190 CEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACILGKEGITSAYNTGRGVVKIRAKAE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           I   +  +  IV+TEIPYQVNKA +++ IA L ++  I  I  + D S  + G ++V+EL
Sbjct: 250 IVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGMKIVVEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K  A  DV+LN+LY++T+LQS F + M+AL   +P    L  +L+ ++  +++V+ RRT+
Sbjct: 310 KSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQPRVLNLKQVLEYYLEHQKDVITRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ N+D V+  IR S   E AR  LM+               
Sbjct: 370 YELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALME--------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q +AIL++RL RLTGL R  I  E   L   I     +L+  
Sbjct: 415 -----------NFKLSQRQAQAILDMRLQRLTGLERKKIDEEYVDLLETIDWLESVLADE 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +++ IIK++L  +K      RRT I     +M+ ED I  ED+VVT+SH GY+KR  L 
Sbjct: 464 HKVMNIIKEDLQEMKKRFGDERRTEISIDSSEMDIEDLIAEEDIVVTISHQGYIKRQTLD 523

Query: 555 VYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
            +R+Q+RGG G++G   +  +D    LF+ +TH ++LFF++ G VY++K + +P  S  A
Sbjct: 524 NFRSQKRGGVGKTGGSGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIPEASRTA 583

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G A+IN+L+L  GE+IT ++P  E        Y+  AT  G V++  L D   + ++G 
Sbjct: 584 KGTAIINLLALMPGEKITAVIPVKEFREEQ---YMFMATNKGTVKKINLKDLESVRKNGM 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  ++++ VE     ++I+L T+ G  +RF    +R   GR + GV+GISL  GD
Sbjct: 641 IAINLDDDEDLIGVELTDGNSEIILATRNGIAIRFDEQDVRTM-GRTAHGVKGISLNYGD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V++M  V   D++                                              
Sbjct: 700 EVVAMDSVSDEDSE---------------------------------------------- 713

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +LT +E G GKRT   ++R   R GKGI    +++  + G ++ +  +N + +I
Sbjct: 714 ------VLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITE--KTGLVIGMKVINPDQEI 765

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++++  G +IR  V++I    R T+GV + +   D++VVS+  I   E
Sbjct: 766 MMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEE 813


>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
 gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
          Length = 823

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/887 (41%), Positives = 529/887 (59%), Gaps = 91/887 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +ITDEM+++YL YA++VI+ RA+PD RDGLKPV  RIL+GM  MG+  N+ + KCARI G
Sbjct: 10  NITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVG 69

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E++GK HPHG++A+YDAL R+AQ W++R  L+EGQGNFGS+DGDPPAA RYTE RL   A
Sbjct: 70  EILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARLTPIA 129

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG  GIAVGMATNIP HNL EV 
Sbjct: 130 EEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLNEVC 189

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D    +IDNPD  ++ L  I+ GPDFPT  +ILG  GI NAY+TGRG I IR  +HIE+ 
Sbjct: 190 DAITHLIDNPDATIEDLARIMPGPDFPTAGMILGTEGIMNAYSTGRGHITIRAKAHIEEA 249

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           +     IVVTE+PYQVNKA + E+IAEL R+++I  I D+RDESDR G R+VI LK+ A 
Sbjct: 250 ARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDAQ 309

Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +LN LY++T +Q+ F VNM+AL   G +P   TL  +L+ ++  R EV+ RRT++ L
Sbjct: 310 PKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRTEFDL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           +KAR RAH+L GL IA+ NLD V+  IR S + + AR  LM                   
Sbjct: 370 DKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMN------------------ 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE Q  AILE++L RL  L R  I  E   +   I E  DIL++  ++
Sbjct: 412 --------GFALSEAQANAILEMQLGRLAALERQRIEEEYREVIQLIGELEDILANPRKI 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L +IKQ+L  +K +   PRRTRI+ +   ++ DED I    +++T++  GYVKR    +Y
Sbjct: 464 LHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVRVLITLTDRGYVKRQSPDIY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGG+G  G  +R++D V  +   ST   +LFF+  G VY+ K   LP  S  A+G 
Sbjct: 524 RTQRRGGRGIRGATIREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRTAKGL 583

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L+N+++L  GE++T+++  P+ E +    Y++ AT  G ++R  + ++ Q+  +G IA+
Sbjct: 584 PLVNLIALEPGEQVTSVLAVPDFEKAE---YLIMATVRGKIKRTSIKEYSQVRSNGLIAI 640

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  DE+  V       D+LLTT  GQ +RF    +R   GR + GV GI+LA+GD+V+
Sbjct: 641 GLEDGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEGDRVV 699

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM                                                     +L  +
Sbjct: 700 SM-----------------------------------------------------DLARE 706

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L V+  G+GKRT+  ++ +  R+  G+    +   +E+ A+  V  V+++  +  +
Sbjct: 707 NAALLVVTANGYGKRTALEEYPVKGRATGGVITIRLRPGDEV-AVAHV--VHEHSLLTFI 763

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS--VERIRESE 901
           ++ G ++R   + I +  R T+GV I + A ++RV +  VE   ESE
Sbjct: 764 TESGMVMRTEADGISMFGRNTQGVTIVNLAPNDRVAALCVEEPDESE 810


>gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64]
 gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64]
          Length = 926

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/896 (41%), Positives = 547/896 (61%), Gaps = 94/896 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ +  ++ K 
Sbjct: 80  GIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHRKS 139

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  L++G GNFGS+DGD  AA RYTE R
Sbjct: 140 ARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTEAR 199

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L+ + KDTVDF  NYD S +EP VL +R+PN+LV+GG GIAVGMAT+IP HN
Sbjct: 200 MSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHN 259

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE +D  +A+ +NP+ID+  LME + GPDFPTGA+ILG  GIK+AY TG+GSI IR ++
Sbjct: 260 LGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIPIRSIA 319

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+ S  + +I+VTEIPY+V K A++EKIAELV++K+I  IADLRDES R+G R+VI++
Sbjct: 320 KIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIVIDV 379

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+  +  V+LN+LYR T+LQ  ++VN VAL   +P+   L   L+ ++  +EEVV RR K
Sbjct: 380 KKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVVTRRLK 439

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+DR H+L GL IAV N+DEV+ II+ S     A+  L +R +N           
Sbjct: 440 FDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR-FN----------- 487

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E QT+AI+++RL RLTGL  +++  E+  L  EI+    IL++ 
Sbjct: 488 --------------LTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANH 533

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S L+ +I +EL  +K++ +  RRT+I   ++G +   DED I + D+V+T S  G+VKR+
Sbjct: 534 SELIKLIVKELTEIKEKYNDKRRTQINYEIQGTIT--DEDLIPQRDIVITTSAKGFVKRM 591

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ QRRGG G   +   D+D +  +   +THT +L FS+   VY+ +   +P  S 
Sbjct: 592 DLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSR 651

Query: 612 QARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           Q++G A INI   L + +GERI +++P    ++   + Y+  ATK+G +++ +L+++ +I
Sbjct: 652 QSKGVAFINIIPSLRVKEGERIVSMLPV---DTYDEDHYLFTATKNGIIKKTRLTEYERI 708

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++     T E+ ILL     + V+F     R  + R + GV+GI+
Sbjct: 709 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 767

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L     V S +                                       +S EG     
Sbjct: 768 LDSHQTVSSTS---------------------------------------TSQEG----- 783

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + ILT+ +KGFGK T    FR+  R GKG++  + SK+   G +V    VN
Sbjct: 784 ---------ELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGIN-SKL--AGDIVFARFVN 831

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             D++++++  G  IR  +++I    RA KGV I +  K E + +VE I+  E  D
Sbjct: 832 PQDELLIITTSGLTIRTAISQISQTGRAAKGVKIINLKKREEIQAVEIIKIDEKTD 887


>gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
 gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
          Length = 824

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/871 (41%), Positives = 531/871 (60%), Gaps = 85/871 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+     
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG   + +    +E
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+VI+++R  SA VIL
Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV RRT++  NKA  RA
Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S + + A+  +M+R                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMER------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL RD I NE   L   I +  DIL++  R+L II+ E
Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTE 454

Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  +       RRT ++ G +L +EDED I  E++V+T+++ GY+KRV  S +RAQRRGG
Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P     A+G  +IN+L 
Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           ++  ERI  I+            Y+ F T+ G V+R  ++ F  I  +G IA+ L   DE
Sbjct: 575 IDSSERIEAII--SASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     E+ +++ T  G  V F  + +R   GR + GVRGI L  GD V+  A+   
Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAV--- 688

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                I+ D+E                             +L +
Sbjct: 689 ---------------------ITEDSE-----------------------------VLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+  + I++++DKG LI
Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           R  V  +    RAT GV +     + +VV++
Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTM 787



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 19/204 (9%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYK 600
           + LG VKR  ++ +   R    G   + +R+ D + ++        V+  +  G+   +K
Sbjct: 601 TRLGVVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 658

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           E + R        R  A +  + L  G+ +       ED        V+  T++G  +R 
Sbjct: 659 EALVR-----DMGRTAAGVRGIRLRDGDYVVGAAVITEDSE------VLVITENGYGKRT 707

Query: 661 KLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           K S++    R GK    A        +  + T + E DI++ T  G  +RF ++ +    
Sbjct: 708 KGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITDKGVLIRFNVATVSQ-T 766

Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741
           GR ++GVR + +    +V++MA V
Sbjct: 767 GRATLGVRLMKMENNAKVVTMATV 790


>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
          Length = 846

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/889 (41%), Positives = 537/889 (60%), Gaps = 73/889 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RLQ      LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+  +TVDF  N+DGS QEP V+ +R P +L+NG  GIAVGMATNIP HNL E++DG +
Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259
           A+I+NP+++   LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ +RGV+ IE    K 
Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQILGRSGIREMYTTGRGSVTMRGVASIETIEAKG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DR+ +++TE+PYQ NKAA++E+IAELV +K++  IAD+RDESDR G R+VIEL+R A 
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + RRT+YLL K
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVKGEPVLLTLRKMLEVFLDFRVETIERRTRYLLRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R H+L+GL IA+ NLD ++ +IR + +  TAR +L+++                   
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE+Q  AIL+++L RLT L  D IR E   L  +I +  DIL+ + R+L 
Sbjct: 402 -------FGLSEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVLA 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I +EL  ++   D+PRRT I++    +ED D I  E  VV ++  GY+KR+P+S + A 
Sbjct: 455 LITEELGVLRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG +G++G   + E+ V      + H S+L FS  G VY    +R+P  S  A+G  ++
Sbjct: 515 SRGTRGKAGTRSQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+++   E      +  +V  T  G ++R +LS F  I  +G IA+ L+
Sbjct: 575 QLLPIPREEQITSLLAVSE---FAEDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVIS 737
             D +  V      + +L+ ++ G  + F +S   +R   GR + GVR ++L  GDQ++S
Sbjct: 632 EGDALTWVRLAQPGDSLLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M ++    AD  E        S+       DTEE+         EG              
Sbjct: 691 MDVLPVELADRVE--------SSSAAADEEDTEEV------PPSEG-------------- 722

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            ++L  S  G GKR     FR+  R+G G+R     +  ++  LV +  +   ++++LVS
Sbjct: 723 PWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKFRRDGDV--LVGLKVLGAGEELLLVS 780

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +KG ++R+  + +   SRA  GV +      +R+ S +R+ E  +V  A
Sbjct: 781 EKGVIVRMQADAVPQQSRAATGVRL------QRLDSGDRLSEVVLVPPA 823



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +V + S LG  KRVP+  +R Q+R G G R     RD D +  L ++     +L  S  G
Sbjct: 726 LVASASGLG--KRVPVDQFRLQKRAGMGLRCMKFRRDGDVLVGLKVLGAGEELLLVSEKG 783

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFP 637
            + + +   +P    Q+R    + +  L+ G+R++ ++   P P
Sbjct: 784 VIVRMQADAVP---QQSRAATGVRLQRLDSGDRLSEVVLVPPAP 824


>gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
 gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
          Length = 875

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/887 (40%), Positives = 520/887 (58%), Gaps = 88/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V ++ EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G   ++ Y KCA
Sbjct: 37  IEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRSYNKCA 96

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VM  YHPHG++AIYDA+ R++Q WS+R  LI+GQGNFGS   D PAA RYTECR+
Sbjct: 97  RVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAAPRYTECRM 156

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q  A  L+ D+ +DTVDF PNYDG   +P VL AR+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 157 QPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMATQIPPHNL 216

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +GC  ++DNP+       + L+++I+GPDFPTGA+I+GR+GI++AY TGRGSI +R
Sbjct: 217 REVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIMGRSGIEDAYRTGRGSITMR 276

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R  +VVTE+PYQVN  A+  KIAELV+  ++  IADLRDE S R G R+
Sbjct: 277 AVVEVEEIQG-RTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDETSGRTGQRL 335

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P    +   ++ +V  + EV+V
Sbjct: 336 VIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPINAFVRHWVDHQVEVIV 395

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A ++ H+L GL  A+  LDEV+ +IR SP  E AR  LM          DL
Sbjct: 396 RRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLM----------DL 445

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ RAIL+++L RL  L R  I +E + L   I++  DI
Sbjct: 446 LD----------------IDEVQARAILDMQLRRLAALERQKIIDEHDRLQALIEDLEDI 489

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++ +R   II +EL ++ ++    RRT IV    ++  ED I  E++VVT++  GY KR
Sbjct: 490 LATPARQRTIISEELAAIVEQYGDERRTEIVPSDAEVNMEDLIPDENVVVTITRGGYAKR 549

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           + +  YR+QRRGGKG  G  +R +D V   F   TH  +LFF+  G VY+ + W LP GS
Sbjct: 550 IRVDAYRSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRARAWELPEGS 609

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + NI++    E+I  ++   + +++    Y+V ATK+G V++ +L+++     
Sbjct: 610 RDSKGQHVANIMAFGPDEKIAQVLTIKDYQAA---PYLVLATKNGLVKKTRLTEYDSPRS 666

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G IA+ L   DE++  E  +  +DIL+ ++ GQ +RF  S  ++   GR + GV G+  
Sbjct: 667 GGLIAVNLREGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPMGRATSGVTGMRF 726

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D++++M                        R++  D E+                  
Sbjct: 727 RGDDELLAM------------------------RVVPSDAEDAE---------------- 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +  V + G  KRT+   +R+  R G G++    S  ++ G LV    V  
Sbjct: 747 ----------VFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKAS--DKGGDLVGALVVGQ 794

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            D++++V   G ++R  V+E+R+  R T GV      K E +V+V R
Sbjct: 795 QDEVMVVMSSGKVVRSRVDEVRMTGRDTSGVRFADPGKKEHIVAVAR 841


>gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
          Length = 863

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 880

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/872 (40%), Positives = 523/872 (59%), Gaps = 84/872 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE K      I+ EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K 
Sbjct: 3   EEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ K+TVDF PNYDG  +EP VL +R+PN+LVNG  GIAVGM TNI
Sbjct: 123 TEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     ++ NP      LME + GPDFPT  +++G+ GIK AY TG+G I++
Sbjct: 183 PPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVIGKAGIKKAYETGKGRIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+  +  +E+I+V+EIPY VNKA ++E+IA+L R+KRI  I  +RDE+ RQG R+
Sbjct: 243 RARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE ++ ASA VILN L++ T +Q+ F+ NMVA++   P+  +L  IL+ ++  +EE++ 
Sbjct: 303 VIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQGVPKTLSLKQILRRYLDHQEEIIR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   KA  RAH+L GL IA+ ++DE+V I+R S   + A+   M +          
Sbjct: 363 RRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYG-------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AIL++RL RLTGL R+ I NE   L  EI    ++
Sbjct: 415 ------------------LSDKQAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEV 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S  +   II QELL ++      RRT I  G + ++EDED I   ++++T+S  GY+K
Sbjct: 457 LASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV  S YR Q RGG+G  G+ ++D D +  +   STH  +L F+  G V++ K + +P  
Sbjct: 517 RVEDSEYRTQNRGGRGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEY 576

Query: 610 SPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              A+G  ++N+L+L + E++  ++   P D+ + +  Y  F TK G V+R  + ++  I
Sbjct: 577 GRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNI 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V   + E++I+L +  G  V F    +R   GR + GVRGI 
Sbjct: 637 RNNGLIAINLRDDDELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSM-GRTATGVRGIR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A +L  D D                                         
Sbjct: 696 LDQDDYVVG-ASILGPDQD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKG+GKRT + ++ I +R GKG++  ++++ N  G LV +  V+
Sbjct: 714 -----------VLIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKN--GPLVGLATVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            ++ I+L++D+G +IR    +I    RAT+GV
Sbjct: 761 LDEDIMLMTDEGVVIRFHSVDISQTGRATQGV 792


>gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 812

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/895 (40%), Positives = 523/895 (58%), Gaps = 91/895 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S SI DEM  SY+ Y+++VI+GRAIPD+RDGLKPV R+ILFGM+++G+  N+ Y K A
Sbjct: 5   IISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGK+HPHG+ AIYDAL RMAQ +S+R  LI+GQGNFGS+D DPPAA RYTE R+
Sbjct: 65  RIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEARM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q+ A  LL D+ K+TV   PN+DGS  EP VL A+ PN+L+NG  GIAVGM TNIP HNL
Sbjct: 125 QRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+V+   A+IDNPD  ++ LME ++GPDFPTG +I+GR GIK  Y TGRG +V+RGV+ 
Sbjct: 185 SELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIMGRDGIKKMYETGRGRMVVRGVAE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G   +IV++EIPY V+KA ++++IA + +  R + + ++RDESD++G RVVIELK
Sbjct: 245 IEEAKGG-TRIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           RGA  +V+LN LY++T LQ+ F  +M+ ++  K P+   L  I +AF+  R EVV RRT+
Sbjct: 304 RGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRRTE 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A  +AH+L GL  A   +D VV IIR S N + A   L +               
Sbjct: 364 YELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQE--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++  Q++AILE+RL +LT L  D +  E   L  +IKE  +ILS  
Sbjct: 409 -----------TLEITPEQSQAILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILSDD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +  IIK+EL  ++ +    RRT+I ++G  D   ED I  +++VVTV+  GY+K  PL
Sbjct: 458 KNIYQIIKKELQELEAQYGDARRTKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKATPL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGGKG  GV   D DFVT++   +  +  +  +S G  Y    + L   S  +
Sbjct: 518 EDYRKQGRGGKGIRGVKTTDADFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSRSS 577

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK L N + +   E +  ++    +E +  N +++  T+ G ++R     FI    SG 
Sbjct: 578 RGKLLANYVKIEPDETVQAVLSVKREEVA--NKHLIITTRKGKIKRTPFEAFINSRTSGI 635

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+ L+  D ++     T E + I+++T+ G  +RFPIS IR   GR + GV+ ++L   
Sbjct: 636 KAITLNEGDSVVDAGISTSEEETIIISTRKGMVIRFPISQIRPM-GRTAAGVKAMALRGD 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  IVL  D  Y                                            
Sbjct: 695 DEVVSATIVLPVDERY-------------------------------------------- 710

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  + T +E+G GKRT   ++R  +R+G G++  ++  +   G +V    V + D+
Sbjct: 711 -------LFTATERGVGKRTPLSEYRPQHRAGMGVK--NIYGLERTGYVVGSLVVTNEDE 761

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           II+++  G  IR+P  +IR   R TKGV +     D+ V S+     + +VD+AE
Sbjct: 762 IIVITKNGMSIRIPAADIRPTGRVTKGVKVVELRDDDTVASL-----AVVVDQAE 811


>gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   +E+++++
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601


>gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 779

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/849 (41%), Positives = 517/849 (60%), Gaps = 85/849 (10%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G
Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMG 180

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           ++GI  AY TG+GSIV+R  + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI
Sbjct: 181 KSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRI 240

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I  +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +
Sbjct: 241 EGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILS 300

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A
Sbjct: 301 LRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEA 360

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + ELM +                            LSE Q++AIL++RL RLTGL RD I
Sbjct: 361 QAELMSK--------------------------FKLSERQSQAILDMRLRRLTGLERDKI 394

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDC 532
           ++E + L   I +  DIL+   R+  IIK EL  VK +    RRT ++ G +L +EDED 
Sbjct: 395 QSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDL 454

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   D+++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF
Sbjct: 455 IEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFF 514

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P     A+G  ++N+L L++ E I T++    D S  ++ Y+ F T
Sbjct: 515 TNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTT 572

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           +HG V+R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G  VRF  SA
Sbjct: 573 RHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 632

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R  + R + GV+G++L +GD V+  +++     D DE                      
Sbjct: 633 VRGMS-RIATGVKGVNLREGDTVVGASLI----TDQDE---------------------- 665

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                      +L ++EKG+GKRT + ++    R GKG++   +
Sbjct: 666 ---------------------------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKI 698

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ++ N  G L  +  V  ++ +++++D G +IR  +  I    RAT GV +    +D ++V
Sbjct: 699 TEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 756

Query: 893 SVERIRESE 901
           +   +  +E
Sbjct: 757 TFTTVAVAE 765



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 461 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 517

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 518 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 566


>gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 835

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/891 (38%), Positives = 540/891 (60%), Gaps = 85/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+ M ++GV  +  Y K A
Sbjct: 22  IQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKAA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++G GNFGS+DGD  AA RYTE ++
Sbjct: 82  RVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVKM 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  L+ ++ KDT+DF  NYDG+ +EP+VL    PN+L+NG  GIAVGMAT IPTHNL
Sbjct: 142 AKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG +  I+N DI +D LM+ I+GPDFPTG  +LG   +K+AY TG+G+++++  SH
Sbjct: 202 GEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGLQSLKSAYHTGQGAVILKAKSH 261

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           + K  G +  I+VTEIPYQV K  ++EKIA LV+ K + +I DLRDES R+G ++VIELK
Sbjct: 262 VSKERG-KTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEEITDLRDESSRKGMKIVIELK 320

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A++ +ILN+LY+++ L+  F +NMVAL G  P+  +L  IL+AF  FR EV+ R+  +
Sbjct: 321 RDANSKIILNKLYKHSQLRISFGINMVALVGKTPQLVSLKQILEAFFNFRIEVINRQKSF 380

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  R H++  L   + +++  +++I+ S + + A+ +LMQR +N            
Sbjct: 381 ELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQSKLMQR-YN------------ 427

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          E+Q++AILE+ L RL       +  E  +L  EI EC  I+ S+ 
Sbjct: 428 -------------FDEIQSKAILEMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQK 474

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +   I+++ELL +K +    R+T +  +  L+ EDED I  + +++T+++ GY+K + + 
Sbjct: 475 KKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLIEEKPIIITITNKGYIKSMDID 534

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q+RGG+G SG+ + +EDF+  L I STH   LFF++ G VY+ K + +P+G  Q++
Sbjct: 535 TYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSK 594

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  L+N L   + E +T+       + S +  Y+ FATK G V++  L ++  I++ G I
Sbjct: 595 GSHLVNFLPFEKDEFLTSFTSVKNFDQSQD--YLFFATKKGIVKKTPLKEYSHISKRGLI 652

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A++L   DE+L+V   T   +I+L +  G  + F  + I+  + RNS+GV G+ L   + 
Sbjct: 653 AIRLKENDEVLTVNKTTGTKNIILASNNGNAICFCETKIKSIS-RNSMGVIGMRLGSDEF 711

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++  A+                           DT+                        
Sbjct: 712 LVGAALF--------------------------DTDS----------------------- 722

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            KEQ IL ++E GFGK T+   +RI  RSGKG +   V+  ++ G L+ +  V   D +I
Sbjct: 723 -KEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVN--DQKGRLITLQVVLPTDDLI 779

Query: 855 LVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + SDKG ++RV +++I +  ++AT+G  I       + VSV  +++ E++D
Sbjct: 780 VSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVVKK-EVLD 829


>gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
 gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
          Length = 812

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/884 (40%), Positives = 526/884 (59%), Gaps = 91/884 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V+I  EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF   ++   +N+   KCARI
Sbjct: 4   NVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCARI 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+Y+AL R+AQD+S+R  L +GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMSR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L+D+ K+TVDFRPNYD +  EPVVL  + PN+L+NG  GIAVGMATNIP HNL E
Sbjct: 124 LASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLSE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D  + +ID P+  ++ LM++++GPDFPTG  +    G+ +AY TGRG++ +RG   IE
Sbjct: 184 LSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAGQGLYDAYTTGRGTVKVRGKVEIE 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 + +++ EIP+ +NK++++EKIA L+ +++I  ++DLRDESDR+G RVVIELKRG
Sbjct: 244 DRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKRG 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++++N LY+YT L++ F +NM+A+   +P    L   L  F+  R EVVVRRTK+ L
Sbjct: 304 TMPEIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALAYFLDHRREVVVRRTKFEL 363

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL  A+ ++DEVV +IR S  P  A+  LMQR                 
Sbjct: 364 RKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQR----------------- 406

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSEVQ +AIL++RL RLTGL R  I  EL  L  +I     IL   S L
Sbjct: 407 ---------FELSEVQAQAILDMRLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASVL 457

Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G+I+ E+  +K    TPRRT ++ E L +++ ED +  +D+V+T+S  GY+KR  L +Y
Sbjct: 458 WGVIRDEVEYIKQTYSTPRRTEVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGIY 517

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + QRRGGKG +GV   ++DFV +    + H  +L F++ G +++ KV ++P GS  A+G 
Sbjct: 518 QQQRRGGKGVAGVHTGEDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKGV 577

Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            + N++ + + E + TI+    F ED+S       +FAT+ G V+R+  + + +  + G 
Sbjct: 578 HIANLVPMEKDEWVNTILTVREFAEDKS------FLFATRRGMVKRSSAALYARSRKGGL 631

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V   T ++ ++L T  G  +RF    +R   GR + GV+GI+L  GD
Sbjct: 632 IAVGLREDDELIMVREITDDDFVVLATADGIAIRFSCRDVRNM-GRGATGVKGIALRHGD 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++                                                    C  L
Sbjct: 691 TVVA----------------------------------------------------CLVL 698

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K     I+T+S  GFGKRT+   +R+ +R GKGI    V+   + G ++    V D++ +
Sbjct: 699 KEDSPAIMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTP--KTGPVIGAKSVLDDEAL 756

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L++    +IR+ V+EIR   RAT GV +       RVV  + +
Sbjct: 757 VLLTSTNKIIRMGVDEIRSVGRATIGVRLVKLDDGARVVGFDTV 800



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   +  ++T+S +G+ KRTS   ++   R GKG+      + +     V  F    N
Sbjct: 491 EDLLPDDDVVITLSRRGYIKRTSLGIYQQQRRGGKGVAGVHTGEDD----FVQEFITTTN 546

Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
            Q +L+ ++KG + ++ V+++   SR  KGV I       KDE V ++  +RE
Sbjct: 547 HQFLLMFTNKGRMHQLKVHQVPEGSRTAKGVHIANLVPMEKDEWVNTILTVRE 599


>gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221]
 gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221]
 gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3]
          Length = 862

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
 gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
          Length = 823

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/886 (41%), Positives = 539/886 (60%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I SV++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEAKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     ++DNPD+    LME++ GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   I++ S  +E+I++TE+PY VNKA ++E+I+EL R+KRI  I  LRDES R+G R
Sbjct: 243 VRGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VILN +Y+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EV+
Sbjct: 303 IVIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL R+ I NE   L   I +  D
Sbjct: 414 -----------------FDFSDRQAQAILDMRLRRLTGLEREKIENEYQELLAFIADLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK+ELL +       RRT ++ G +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVVQIIKEELLDLGKRFGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV  + +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P 
Sbjct: 517 KRVANTEFRAQRRGGRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  ERI  I+     E++    Y+ F TK G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSSERIQAIIAVKNHEAAEQ--YLFFTTKLGVVKRTDVQAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L  +DE+++V      + I++ T  G  V F  S +R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDM-GRAAAGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  AI+                           T E                 
Sbjct: 694 LREGDYVVGTAIL---------------------------TPE----------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  ++T +  G    +S Y   +  R GKGI+  +++  N  G L  +  V+
Sbjct: 710 -------SEVLVITENGYGKRTASSEYP--VKGRGGKGIKTANITPKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + I++++DKG +IR  V  +    RAT GV +     + +VV++
Sbjct: 759 GEEDILVITDKGVIIRFNVATVSQTGRATLGVRLMKMENEAKVVTM 804



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 21/212 (9%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +   + LG VKR  +  +   R    G   + ++++D + ++       +++  +  
Sbjct: 611 EQYLFFTTKLGVVKRTDVQAFSNIR--SNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHG 668

Query: 596 GF--VYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFAT 652
           G+   + E V R        R  A +  + L +G+ +  T +  PE E       V+  T
Sbjct: 669 GYSVTFAESVVR-----DMGRAAAGVRGIRLREGDYVVGTAILTPESE-------VLVIT 716

Query: 653 KHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R   S++    R GK    A        +  + T + E DIL+ T  G  +RF 
Sbjct: 717 ENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAGLTTVSGEEDILVITDKGVIIRFN 776

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           ++ +    GR ++GVR + +    +V++MA V
Sbjct: 777 VATVSQ-TGRATLGVRLMKMENEAKVVTMATV 807


>gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A
 gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni]
 gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 863

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 863

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1]
 gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 863

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   +E+++++
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601


>gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
          Length = 846

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/882 (41%), Positives = 527/882 (59%), Gaps = 91/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +     Y K A
Sbjct: 8   LIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTNAYRKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              G V+G+YHPHG+A++YDAL RMAQ +SLR  L++G GNFGS+DGD PAA RYTE R+
Sbjct: 68  TTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYRYTEARM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ K+TVDF+PN+D   +EP+V+ +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG   +IDNPD  L+ L   I+GPDFPTG +I+GR GI+ AY  GR  I +R  + 
Sbjct: 188 GEVIDGMALLIDNPDATLEELTAHIQGPDFPTGGIIMGRAGIREAYVKGRSRITLRAKAT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R +I+VTEIPY V+KA ++E IAEL +EKRI  I+DLRDESDR+G R+V+ELK
Sbjct: 248 IEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLRIVVELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LN+LY Y+ LQ    V M+AL    P    L  IL  ++ F+E+VV RRT+Y
Sbjct: 308 RDANPQVVLNRLYTYSQLQETVPVIMLALVNGHPRVLPLRDILTEYIHFQEQVVTRRTQY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+  +DEV+RI+R S +    +  LM+R               
Sbjct: 368 DLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L ++Q +AI+++RL +LT L R+ I  EL +L  +I     IL+   
Sbjct: 413 -----------FELDDIQAQAIVQMRLGQLTNLEREKIEEELAALETKIANFKAILADEQ 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R+L I+K+E L VK +    RRTRI  V G +D+ED   I  ED+V+T+++ GY+KR+P 
Sbjct: 462 RILQIVKEEALEVKAKFGDERRTRIENVSGEVDVED--LIPVEDVVLTLTNFGYIKRLPA 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y +QRRGG+G +G+  R+ED   +LF+ STH  VLFF+S G  Y+ K + +P GS  +
Sbjct: 520 AAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSRTS 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + NIL + Q E IT ++  P+ E    + Y+V  TK G V+R  L ++    ++G 
Sbjct: 580 KGMNVANILPVAQDENITAMIKVPKFEE---DCYLVMVTKKGIVKRTSLKEYDTARKAGV 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I + L+  DE++          +LLT           SA  +   RN V +R        
Sbjct: 637 IGILLEEDDELVG---------VLLTDG---------SAHILVGTRNGVAIR-------- 670

Query: 734 QVISMAIVLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                   +  DA    R  + +K +S    L  GD     ++ N +             
Sbjct: 671 -------FVETDARPMGRAAHGVKAIS----LEGGDYVVGVTVPNGAGS----------- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L ++E G+GKR    DFR+ NR GKG+ + ++++  + G +  +  V ++D 
Sbjct: 709 -------LLLITENGYGKRVPFEDFRVQNRGGKGLTSYNINE--KTGPVAGLRVVEESDD 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + +S  G +IRVPV EI + SR  +GV +    ++ +VV+V
Sbjct: 760 ALFISSDGVVIRVPVAEIPVYSRYAQGVRVMRVGEETKVVTV 801



 Score = 41.6 bits (96), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 113/269 (42%), Gaps = 23/269 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQC 705
           V+  T  G ++R   + +    R G+    L  R+E ++ E   C+  + +L  T  G+C
Sbjct: 505 VLTLTNFGYIKRLPAAAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRC 564

Query: 706 VRFPISAI----RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            R     +    R   G N   +  + +A+ + + +M  V   + D     CY+  M  +
Sbjct: 565 YRLKGYEVPEGSRTSKGMNVANI--LPVAQDENITAMIKVPKFEED-----CYLV-MVTK 616

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDF 817
           + ++   + +       + V G + EE  + + +        IL  +  G   R    D 
Sbjct: 617 KGIVKRTSLKEYDTARKAGVIGILLEEDDELVGVLLTDGSAHILVGTRNGVAIRFVETDA 676

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R   R+  G++A  +   + +   V V   N    ++L+++ G   RVP  + R+ +R  
Sbjct: 677 RPMGRAAHGVKAISLEGGDYV---VGVTVPNGAGSLLLITENGYGKRVPFEDFRVQNRGG 733

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEA 906
           KG+  ++   +E+   V  +R  E  D+A
Sbjct: 734 KGLTSYNI--NEKTGPVAGLRVVEESDDA 760


>gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 862

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ I++ E+PYQ NKA ++E+IAELV+E++I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum]
 gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/878 (41%), Positives = 522/878 (59%), Gaps = 86/878 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV     Y K AR
Sbjct: 8   TVVPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL+
Sbjct: 68  IVGDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLE 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  ++ +L ++TV+F PNYD S QEP VL AR P +L+NG  GIAVGMATNIP HN+ 
Sbjct: 128 ALSEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNIT 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++DG +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A  TGRGSIV+RGV+ I
Sbjct: 188 EIIDGLLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVAEI 247

Query: 257 EK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E+ T  DR  I++ EIPYQVNKA ++E+IAELVRE  +  IAD+RDESDR G RVVI+LK
Sbjct: 248 EESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LN+LY  T LQ+ F  N VAL   +P   +L   L  F++FR++VV RRT +
Sbjct: 308 RDANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALVHFLSFRQDVVTRRTLF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+R H+L GL  A+  +D+++ +IR S +P+ AR  L+++               
Sbjct: 368 RLRKARERFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE+Q RAIL++RL RLT L RD I  E   + + I+   DIL SRS
Sbjct: 413 -----------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRLLIRGLEDILGSRS 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL+ +I++E  ++++     RRTRIV    ++  E  I  +   +T+++ GY+KRV    
Sbjct: 462 RLMAVIREEFTALRENYGDARRTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDA 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  QRRGGKGRSGV ++++D V      + H ++LFF+ +G VY+ K   +P     ARG
Sbjct: 522 YPTQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K +   L L   E++T ++     E   +   +VF T +G ++R  LS +  I +SG IA
Sbjct: 582 KPVRGFLPLAPEEKVTRMLNVASFEGDRS---LVFVTVNGIIKRTALSAYSSIRQSGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D +  V     ++ +L+ T+ G  + FPI  +    GR + GVR I L + D+V
Sbjct: 639 LTLREGDRLAQVLVADADSHVLVATRRGMAILFPIHEV-TEQGRTASGVRAIRLREDDRV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
               IV   D                                                  
Sbjct: 698 ADAEIVTETDP------------------------------------------------- 708

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +  V+EKG+GKR     FR  +R G G++ +  ++  +IGA+V++    D D + +
Sbjct: 709 ----VAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAE--KIGAVVSLVKAGDTDDLTI 762

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++ KG   RV  NE+R   R+ +GV++   A D+ +VS
Sbjct: 763 ITSKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVS 800


>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
 gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
          Length = 812

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/887 (39%), Positives = 535/887 (60%), Gaps = 90/887 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I S  +  +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +K +
Sbjct: 4   QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+Y++  RMAQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 64  RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG  GIAVGMATNIP
Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +HNLGEVVDG  A+IDNP+I +D LM  ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R
Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ S  + +IVVTEIPYQVNKA ++E IAEL ++K I  I  LRDESDR G R+V
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN L+++T L+  F   M++L    P   +L  ++  ++  +EEV+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S     A+  LM +           
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL RLTGL R+ I ++   +   I    D+L
Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S R++++ ++K EL+ +K++    RRT+  +     +  D +  E M +TV+   Y+KR+
Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R QR+GG+G SG+ M+D+D+V  +   STH  +LFF+  G VY + V   P+ S 
Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            ARG ALIN + +L + ER+T ++    D S+    Y++  T++G V++  + ++  IN+
Sbjct: 578 TARGSALINFIPTLEKDERVTEML--DPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA++L+  D ++ V     + D++L T+ G  +RF I+   + + GR + GV GI L
Sbjct: 636 NGIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + GD+V+   I        DE+  +                                   
Sbjct: 696 SAGDEVVGAVIA-------DEKDIF----------------------------------- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                       T+S  G  KR     + +  R+GKG+R  +  +  E+ ALVA    +D
Sbjct: 714 ------------TISADGNAKRNKESAYHVQGRNGKGVR--NFKRGFEVVALVA---ADD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVE 895
           ND+++ VS+ G  I+   ++I    ++A +GV++    + +R+ S++
Sbjct: 757 NDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASID 803


>gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 1003

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/894 (40%), Positives = 525/894 (58%), Gaps = 49/894 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +    K VKCA
Sbjct: 106 MVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKCA 165

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +ISG+  G YHPHG + IY  L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R+
Sbjct: 166 KISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEARM 225

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +LDDL  DTVD+ P YD +  EP VL +++PN+L+NG GGIAVGMAT+IP HN 
Sbjct: 226 GAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHNP 285

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D  + +I+ PD  +D L EII GPDFPTG +I GR G++  Y TGR ++V+R    
Sbjct: 286 TEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARCQ 345

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G+R +IVVTEIPYQ  +  ++EKIA LV   RI  I+ +RDESD ++  R+V+EL
Sbjct: 346 IEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVEL 405

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   DVILNQLY+++ LQ  FS+  +AL   KP   TL  +L  F+  R  V+ RRT+
Sbjct: 406 KRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRTQ 465

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-PNPETARR--------ELMQRSWNAS 425
           +LL +AR R H + GL +A+AN+DE+++ IR S   PE   R         +MQR+    
Sbjct: 466 FLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGDE 525

Query: 426 DIKDL-IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             K   ++  +  SYT        L+ VQT  IL +RL +L  L ++ +  E   L  EI
Sbjct: 526 GFKQFQLERGEADSYT--------LTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEI 577

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVS 543
            + +DIL S SR+ GIIK++L  +K      RRT I  E L +++ ED I  E MVV++S
Sbjct: 578 IDYIDILGSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSIS 637

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR P SVY  QRRGGKG  G    +ED +  LF+ STH  +LFF++ G V  +KV
Sbjct: 638 HRGYIKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKV 697

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  +  A+G+A++N+L + +GE+I   +   +     +   +V  TK G V++  L 
Sbjct: 698 YDIPQLARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHT--IVMTTKSGLVKKTPLE 755

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            + +  R G IA+KL   DE++        ++I++ T  G  +RF  S  R   GRN+ G
Sbjct: 756 QYSRPKRGGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSG 814

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+GISL   D V+ M +V   +A     +   K+   +R     +  +++    D S EG
Sbjct: 815 VKGISLVGDDAVVGM-VVTDPEATL---LTVCKNGYGKRTPFGPNLADVSETDADESSEG 870

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E                        + S  +R   R GKG+R    SK N  G ++ 
Sbjct: 871 GDDEAATA--------------------SGSARYRTQKRGGKGLRDIKTSKRN--GKVIG 908

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  VND+D++ L++ KG L R+   +I +  R T+GV I +  + + +++V R+
Sbjct: 909 IARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRV 962


>gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
 gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
          Length = 824

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/871 (41%), Positives = 531/871 (60%), Gaps = 85/871 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+     
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG   + +    +E
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+VI+++R  SA VIL
Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV RRT++  NKA  RA
Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S + + A+  +M+R                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL RD I +E   L   I +  DIL++  R+L II+ E
Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTE 454

Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  +       RRT ++ G +L +EDED I  E++V+T+++ GY+KRV  S +RAQRRGG
Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P     A+G  +IN+L 
Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           ++  ERI  I+            Y+ F T+ G V+R  ++ F  I  +G IA+ L   DE
Sbjct: 575 IDSSERIEAII--SASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     E+ +++ T  G  V F  + +R   GR + GVRGI L  GD V+  A+   
Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAV--- 688

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                I+ D+E                             +L +
Sbjct: 689 ---------------------ITEDSE-----------------------------VLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+  + I++++DKG LI
Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           R  V  +    RAT GV +     + +VV++
Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTM 787



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 19/204 (9%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYK 600
           + LG VKR  ++ +   R    G   + +R+ D + ++        V+  +  G+   +K
Sbjct: 601 TRLGVVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 658

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           E + R        R  A +  + L  G+ +       ED        V+  T++G  +R 
Sbjct: 659 EALVR-----DMGRTAAGVRGIRLRDGDYVVGAAVITEDSE------VLVITENGYGKRT 707

Query: 661 KLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           K S++    R GK    A        +  + T + E DI++ T  G  +RF ++ +    
Sbjct: 708 KGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITDKGVLIRFNVATVSQ-T 766

Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741
           GR ++GVR + +    +V++MA V
Sbjct: 767 GRATLGVRLMKMENNAKVVTMATV 790


>gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5]
          Length = 851

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/894 (37%), Positives = 541/894 (60%), Gaps = 87/894 (9%)

Query: 8   SDEEEEKG----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQ 62
           ++EE+  G    I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M  +
Sbjct: 3   TEEEKNAGLVGRIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAE 62

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  +K   K ARI G+V+GK+HPHG+ ++YDA+ R+AQDWS+R  L++GQGNFGS+DG
Sbjct: 63  LNLYSDKPTRKSARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDG 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R++K    ++ D+ K+TVD+  N+D +  EP VL  + P ++VNG  GI
Sbjct: 123 DSPAAMRYTEARMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL EVVD C A IDNP+I  + +++ I+GPDFPTG +I G  G++ A  
Sbjct: 183 AVGMATNMAPHNLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIYGYEGVREAML 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG +++R  + IE T   RE IV+TEIPY +NKA M++KIA+++ EK+I  I+ + DE
Sbjct: 243 TGRGRVMMRAKTDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDE 302

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R++I LK  A A V+LN L++ T LQ+ F+VN +AL   +P+   +  ++K FV
Sbjct: 303 SDRNGLRIIIILKHDAVASVVLNTLFKNTPLQTSFAVNNIALVNGRPQMLPMRDLVKHFV 362

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +VVVRR ++ L KA +R H++ GL IA  N+DE+V IIR S  P+ A++ +++R  
Sbjct: 363 DHRHDVVVRRARFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIER-- 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS++Q  AI+E+RL  LTGL    +  E + L  
Sbjct: 421 ------------------------FNLSDIQASAIIEMRLRALTGLEYGKLIAERDELTK 456

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I    ++L +    + IIK ELL +K++    RR+ IV    +   ED    +DMV+T+
Sbjct: 457 QIAYLKEVLENVGMQMQIIKDELLEIKEKYGDERRSEIVYSSEEFNPEDFYADDDMVITI 516

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH+GY+KR PL+ YR Q RGG G  G   RDEDF+  +++ S H ++LFF+  G  +  K
Sbjct: 517 SHMGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLK 576

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRN 660
           V+ +P G+  ++G+A+ N++ +   +++   +      DE   NN +++  TK G +++ 
Sbjct: 577 VYEIPEGARSSKGRAIQNVIQIEPDDKVRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKT 636

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KL  + +  ++G  A+ +   D+++  +  + + ++++  + G+ +RF  S +R   GR 
Sbjct: 637 KLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGQAEVMIAARDGKAIRFNESTVRPI-GRV 695

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             GVRGIS+ + D+V+ M             IC                     ++ DS 
Sbjct: 696 GAGVRGISIEESDEVVGM-------------IC---------------------VEPDS- 720

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           +Q +L +SE G+GKRT   ++RI+NR GKG++  +V++  + G 
Sbjct: 721 ----------------KQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTE--KTGK 762

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           L+++  V D++ +++++  G  IR  V++IR+A RAT+GV I +  + + + SV
Sbjct: 763 LISIQAVTDDNDLMIINRSGLTIRTAVSQIRLAGRATQGVRIINLREGDAIASV 816


>gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 979

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/894 (40%), Positives = 525/894 (58%), Gaps = 49/894 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +    K VKCA
Sbjct: 82  MVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKCA 141

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +ISG+  G YHPHG + IY  L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R+
Sbjct: 142 KISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEARM 201

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +LDDL  DTVD+ P YD +  EP VL +++PN+L+NG GGIAVGMAT+IP HN 
Sbjct: 202 GAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHNP 261

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D  + +I+ PD  +D L EII GPDFPTG +I GR G++  Y TGR ++V+R    
Sbjct: 262 TEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARCQ 321

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G+R +IVVTEIPYQ  +  ++EKIA LV   RI  I+ +RDESD ++  R+V+EL
Sbjct: 322 IEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVEL 381

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   DVILNQLY+++ LQ  FS+  +AL   KP   TL  +L  F+  R  V+ RRT+
Sbjct: 382 KRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRTQ 441

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-PNPETARR--------ELMQRSWNAS 425
           +LL +AR R H + GL +A+AN+DE+++ IR S   PE   R         +MQR+    
Sbjct: 442 FLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGDE 501

Query: 426 DIKDL-IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             K   ++  +  SYT        L+ VQT  IL +RL +L  L ++ +  E   L  EI
Sbjct: 502 GFKQFQLERGEADSYT--------LTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEI 553

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVS 543
            + +DIL S SR+ GIIK++L  +K      RRT I  E L +++ ED I  E MVV++S
Sbjct: 554 IDYIDILGSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSIS 613

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR P SVY  QRRGGKG  G    +ED +  LF+ STH  +LFF++ G V  +KV
Sbjct: 614 HRGYIKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKV 673

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  +  A+G+A++N+L + +GE+I   +   +     +   +V  TK G V++  L 
Sbjct: 674 YDIPQLARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHT--IVMTTKSGLVKKTPLE 731

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            + +  R G IA+KL   DE++        ++I++ T  G  +RF  S  R   GRN+ G
Sbjct: 732 QYSRPKRGGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSG 790

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+GISL   D V+ M +V   +A     +   K+   +R     +  +++    D S EG
Sbjct: 791 VKGISLVGDDAVVGM-VVTDPEATL---LTVCKNGYGKRTPFGPNLADVSETDADESSEG 846

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E                        + S  +R   R GKG+R    SK N  G ++ 
Sbjct: 847 GDDEAATA--------------------SGSARYRTQKRGGKGLRDIKTSKRN--GKVIG 884

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  VND+D++ L++ KG L R+   +I +  R T+GV I +  + + +++V R+
Sbjct: 885 IARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRV 938


>gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 863

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus H10]
          Length = 809

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/871 (40%), Positives = 527/871 (60%), Gaps = 86/871 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K+Y K ARI GEVMGK
Sbjct: 2   MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PAA RYTE R+ K A  +L 
Sbjct: 62  FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVGM TNIP HNL EV+ G   
Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+G+IV+R  ++IE     RE
Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGRE 241

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+ G R+ I+++R ASA V+L
Sbjct: 242 RIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVVL 301

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +++VV RRTK+ L KA  RA
Sbjct: 302 NNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEARA 361

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+DE+V IIR S + + A+  L+ R                        
Sbjct: 362 HILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR------------------------ 397

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L + Q++AIL++RL RLTGL RD +  E   L  +I +  DIL+   R+  II  E
Sbjct: 398 --FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDE 455

Query: 505 LLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           LL ++      RRT I    ++ +EDED I ++++++TV+H GY+KR+P+  ++ Q RGG
Sbjct: 456 LLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGG 515

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG  G+ ++D DF+  L   STH  +LFF++ G VY  K + +P     A+G  ++N+L 
Sbjct: 516 KGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQ 575

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+F  I  SG IA+ L   DE
Sbjct: 576 LEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           + +V T   + +IL+ T LG  V F  + +R   GR + GVRGI+L   D V+   ++  
Sbjct: 633 LSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGVRGINLRDHDYVVGSGVL-- 689

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            DAD D+                                                 +L +
Sbjct: 690 -DAD-DQ-------------------------------------------------VLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SEKG+GK T + ++ +  R GKGI+  ++++ N  G L  V  ++    I++++  G +I
Sbjct: 699 SEKGYGKHTPAAEYSVKGRGGKGIKTANITEKN--GPLAGVIVISKGKDIMVITTDGIMI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           R    ++    R+T GV +     D +V S+
Sbjct: 757 RFKTKDVSQTGRSTMGVRLIKVNDDSQVASL 787



 Score = 38.9 bits (89), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 33/284 (11%)

Query: 638 EDESSWNNLYVVFATKH-GNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEN 694
           EDE       ++    H G ++R  + +F   NR GK    M +   D I  +   +  +
Sbjct: 480 EDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHD 539

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDER 751
            +L  T  G+        I  + GR + G   V  + L KG++V ++ I +   AD D  
Sbjct: 540 MLLFFTNAGKVYSRKAYEIPEY-GRMAKGLPVVNLLQLEKGEKVQTV-INVPEGAD-DNY 596

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGF 808
           + ++  M   +R       E ++++N   +   +   +E    L    +Q IL  +  G+
Sbjct: 597 LFFITKMGTVKRT---HVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGY 653

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
               +  D R   R+  G+R  ++   + +   V    ++ +DQ++++S+KG     P  
Sbjct: 654 AVTFNENDVRAMGRTAAGVRGINLRDHDYV---VGSGVLDADDQVLVISEKGYGKHTPAA 710

Query: 869 EIRIASRATK---------------GVVIFSTAKDERVVSVERI 897
           E  +  R  K               GV++ S  KD  V++ + I
Sbjct: 711 EYSVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGI 754


>gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 862

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D+ L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ L+  DE+++                                   
Sbjct: 627 LSEYQNIRSIGVRAINLNENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP+  +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESASTQGKMLFAVTKKGMCIKFPLVKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL+VS 
Sbjct: 746 ---------------------------------------------------EQEILSVSA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   +E+++++
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601


>gi|315452542|ref|YP_004072812.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
 gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
          Length = 806

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/884 (40%), Positives = 539/884 (60%), Gaps = 97/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 5   IEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 65  RIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEARM 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LL DL KDT+DF  NYD + +EP +L +R PN+L+NG  GIAVGMAT+IP H  
Sbjct: 125 AAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIPPHRP 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  + V++NP  +L  L+EI++GPDFPTG V+ G+ GI  AY TGRG I +R  S 
Sbjct: 185 DEIIDALIYVLENPQAELIDLVEIVQGPDFPTGGVVYGKAGILEAYTTGRGRIKVRAKSR 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +EK + +RE I++ EIPYQVNKA ++E+I+ L ++K +  IA++RDESDR+G RVVIELK
Sbjct: 245 VEKHN-NRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRVVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A ++++LN LY+ ++++  FS+ ++A+   +P  F L+ +LK F+  R+ VV+RRT +
Sbjct: 304 KDAYSEIVLNHLYKSSNMEITFSIILLAIYNKEPRVFNLLELLKLFLVHRKSVVIRRTIH 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL +A+ + + V+ +I+ S + + A+  LMQ                
Sbjct: 364 ELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQ---------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T +LSE Q++AIL++RL RLTGL ++ I+ E   L  +I    +IL +  
Sbjct: 408 ----------THHLSEEQSKAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNAD 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +IK+ELL VK++  TPR+T+I E    +  ED I  EDMVVT+SH GYVKRVPL V
Sbjct: 458 KLNALIKEELLEVKEKFSTPRKTQIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLKV 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  QRRGGKG++     ++DF+   FI +TH ++LF ++ G ++  KV+++P     A G
Sbjct: 518 YEQQRRGGKGKNSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRNAIG 577

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +AL+N++ L  GE I   +P   F  D+S      +VF TK+G V+R +LS F +I R G
Sbjct: 578 RALVNLIDLQPGESIKATIPTKDFDADKS------LVFFTKNGIVKRTELSAFGRI-RGG 630

Query: 673 KIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             A+ L+  D +++   +++  QE  + + +  G C+RF + ++R   GR + GVRG+ L
Sbjct: 631 VRAIVLEEDDALVTAKIIDSSVQE--LFMASSKGMCIRFSVESVREM-GRVARGVRGMRL 687

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD VI                                              G +S + 
Sbjct: 688 REGDFVIGA--------------------------------------------GGVSSD- 702

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  EQ +L+VS KG GK+T +  +R   R G G+    ++   + G LV +  V++
Sbjct: 703 -------EQKLLSVSSKGIGKQTLAGAYRAQGRGGLGVIGVKITP--KTGHLVGIVSVDE 753

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              ++L++  G +IR+P+  IR   R   GV +     DE V +
Sbjct: 754 GQDLMLLTKSGKMIRMPMETIRETGRNASGVKLVQMESDEVVYA 797


>gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
          Length = 854

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/890 (40%), Positives = 533/890 (59%), Gaps = 91/890 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + +  Y K A   G 
Sbjct: 20  VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + A 
Sbjct: 80  VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  GIAVGMATNIP HNL EV+D
Sbjct: 140 EMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           GCVA I++PDIDL  LME I+GPDFPT  +I+GR+GI+ AYATGRG I +RG + IE+  
Sbjct: 200 GCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEEKK 259

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R QI+VTEIPY VNKA ++E IA+LV+EKRI  I+DL DE++R+G R+VI++++ A+ 
Sbjct: 260 NGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDANP 319

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LNQLY+YT LQ    V M+A++   P+  TL  +++ +V F++EVV RRT+Y L KA
Sbjct: 320 QVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKA 379

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           R+RAH+L GL  A   +DE++  IR      +  +  +   +   D              
Sbjct: 380 RERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDD-------------- 425

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                       Q  AI++L+L RL GL    I  EL SL  +I++  +IL+  +R+L I
Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEI 474

Query: 501 IKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           +K ELL +K      RRT I  V G +D+  ED I  E  V T++  GY+KR   + Y+A
Sbjct: 475 VKSELLEMKRRFGDDRRTEIETVTGEVDI--EDLIAEEQCVYTLTEAGYIKRQLKATYQA 532

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGG+G SG+  ++ED V ++F+ STH  VLF +  G +++ K + +  GS  ++G  +
Sbjct: 533 QKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNI 592

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L L +GE++T ++   +D ++    +V   TK G ++R  L  +  I +SG I + L
Sbjct: 593 VNLLQLAEGEKVTNMLCQSKDTANEGG-FVTMVTKQGLIKRTPLEQYANIRKSGLIGIAL 651

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +  D +      +  + +++ T+ GQ +RF     R   GR+  GVR I LA+GD+V+ +
Sbjct: 652 NEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GRSGHGVRAIKLAEGDEVVGV 710

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I                                                 C+E      
Sbjct: 711 CI-------------------------------------------------CRE----NA 717

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILTV+E G G+R+    +RI+ R GKGIR  D SK      + AV  V+D D ++L S 
Sbjct: 718 TILTVTENGKGRRSDIDTYRITARGGKGIRNYDASK----DKVAAVKIVDDVDDVLLSSQ 773

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +G +IR+  NEI + SR   GV +    ++++V+ + R       DEA++
Sbjct: 774 EGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHD---DEAQT 820


>gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 862

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
          Length = 885

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/896 (39%), Positives = 534/896 (59%), Gaps = 56/896 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I D M  +YL Y+++V +GRAIPD+RDGLKPV+RRIL+ M Q+G+  +   VKCAR+
Sbjct: 10  QVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMGKYHPHG+AAIYDAL R+AQD+S+R  LIEGQGNFG++DGDP AA RYTECR+++
Sbjct: 70  VGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMER 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTV+  PN+D S  EP VL ARYP +LVNG  GI VGMAT+IP HNLGE
Sbjct: 130 LAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  + ++DNP   +D LME + GPDFPTGA+I GR  ++  Y TG GSI IR  + I 
Sbjct: 190 VIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSIKIRAKADII 249

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316
           +  G REQI+V+EIPY + K  +++KIAELV +KRI  I+ LRDES  R G R+VIE+KR
Sbjct: 250 EKDG-REQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIKR 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           GA   V+LNQL+ +T L++     M+ ++  +P    L+ +L+A++  R EV+VRRT + 
Sbjct: 309 GAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRLEVIVRRTLFE 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA+ RAH+L GL  A+AN+++VV+IIR S + + A   L+ R                
Sbjct: 369 LKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        +++Q  AIL++RL +LTGL  + +  E   L   I+    + +SR  
Sbjct: 413 ----------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREM 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            LG+IK EL  ++++   PRRT I     D+   D I R   V+TVS+ GY+KRVP   Y
Sbjct: 463 QLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R Q RGGKG  G+  ++ED V  LF   +H  + FF+  GF+Y   V+ +P GS   +G+
Sbjct: 523 RTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGR 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A+ N++ +  GE+I  ++   ++E    N Y+V A++ G +++++L+ F  + R G  A+
Sbjct: 583 AITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRAL 642

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLA-KGDQ 734
            ++  D+++        N+ILL+TK G    F     ++   GR + GV G+    +GD 
Sbjct: 643 VIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDS 702

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ I+        E +        +   +  + +    +     V G+  E       
Sbjct: 703 VVSLEII-------REHLYEEPAEDEEGEEVEVEVDVDEEM----PVVGSGPE------- 744

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ G GKR+    +R + R  KG+      K+ E   +++V  + + D+I+
Sbjct: 745 -----VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNI---KLREGETVLSVVQITEEDEIL 796

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           L +++G L+R+P +EIR   RA+ GV I +    +R+  V ++ E ++     + E
Sbjct: 797 LTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEE 852


>gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
 gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
          Length = 814

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/864 (40%), Positives = 517/864 (59%), Gaps = 83/864 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++   +N+ Y K AR+ 
Sbjct: 5   INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQ++S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TV FRPNYD S  EP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG +  +DNP  D++ L+ +++GPDFPTGA I G  G+  AY TGRGSI IRG + IE+
Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGKGLIEAYTTGRGSIKIRGKAEIEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +V+ EIPY +NK++++EKIA L+ E RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 245 RKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKGV 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L++ F +NM+ +   +P    +  +L+ F++ R EVV+RRT + L 
Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIQQVLEHFLSHRREVVLRRTAFDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMER------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL +   L 
Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLR 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  +KD+  TPR+T I+E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 459 GVIRDEITEIKDKYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQ 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 519 QKRGGKGVAGVSTSGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +     E S+   Y +F T+ G V+R+    +     +G IA+ L
Sbjct: 579 ANLLPMDKEEFVATALAI--REFSFER-YFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTL 635

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+      ++LL T  G   RF IS IR   GR + GV+GI+L   D+V + 
Sbjct: 636 KEGDELLTVKEIDDNAEVLLATNQGLSNRFHISGIRP-TGRAAAGVKGIALKGQDRVAAG 694

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I                                        + GN   E          
Sbjct: 695 VI----------------------------------------MTGNGRNE---------- 704

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LT+S  G+GKRTS   + + NR G G+    V+   + G ++    VN +D+++L++ 
Sbjct: 705 -VLTISAHGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVNADDELLLLTS 761

Query: 859 KGTLIRVPVNEIRIASRATKGVVI 882
              +IR+ V++I    RAT+GV++
Sbjct: 762 ANKIIRLSVSDISAVGRATQGVML 785



 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T+S +G+ KRT    ++   R GKG+     S  + + +  A     ++ Q++L 
Sbjct: 496 EDVVITLSRRGYIKRTKVDSYQQQKRGGKGVAGVSTSGDDFVQSFCA---TTNHQQLLLF 552

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
           ++ G +  +PV++I    R  KG  I       K+E V +   IRE
Sbjct: 553 TNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIRE 598


>gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
 gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
          Length = 803

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/872 (40%), Positives = 527/872 (60%), Gaps = 92/872 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DE+ +SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G+  N    K ARI GE
Sbjct: 10  IEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL + A 
Sbjct: 70  VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMAT+IP HNL E VD
Sbjct: 130 EMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNLSETVD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             V +ID+P+  ++ LM+ I+GPDFPTG +++  + +KN Y  GRG IV+RG  H+E+  
Sbjct: 190 ALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNGSELKNVYEEGRGRIVVRGKVHVEE-- 247

Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           G R ++IV+TEIPY V+KA ++E+IA+LV++   + + ++RDESD++G RVVIE+ +  +
Sbjct: 248 GKRLKRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIPKDTN 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            D+I+N LY+ T+LQ  F+V M+ ++  K P    L G+L+AF+  R EV+ RR +Y   
Sbjct: 308 EDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAEYEYE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   RAHV+ GL  A   +  VV I+R S + E+AR  LM+                   
Sbjct: 368 KFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ +SE Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL    ++ 
Sbjct: 409 -------TLEISEEQAKAILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKDEKVR 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+E L +K+    PRRT I +  L  + E+ IV ED+V+T+SH GY+K  PL+ YR+
Sbjct: 462 EIMKKEFLYLKERYGDPRRTEITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLNSYRS 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG +   + ++D V  + +    +S LF ++ G  Y  K +++       RGK +
Sbjct: 522 QRRGGKGITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677
              L+L   ERI  ++P      +     +V  TK G ++R  L +F     + G  A++
Sbjct: 582 SAFLNLEDTERIVALVPL-----NGKGKDLVIVTKSGKIKRTSLEEFENATSNRGVRAIR 636

Query: 678 LDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  DEI+S    T E + L + TKLG  +RFP+S +R   GRN+ GV+ I L  GD+V+
Sbjct: 637 IEPGDEIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM +V                                      S EG             
Sbjct: 696 SMDVV-------------------------------------PSEEGE------------ 706

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILTV+EKGFGKRT    +R+  R G G+R  ++S +N+ G +VAV  V  +++I++V
Sbjct: 707 ---ILTVTEKGFGKRTPVQLYRVQKRGGTGLR--NISDVNKTGHVVAVRYVKGDEEIVVV 761

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  G +IR+PV+EI +  R TKGV +     D
Sbjct: 762 TRNGMMIRMPVSEIGVIGRVTKGVKLIELGDD 793


>gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 860

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/893 (40%), Positives = 533/893 (59%), Gaps = 89/893 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + +  Y K A   G 
Sbjct: 20  VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + A 
Sbjct: 80  VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  GIAVGMATNIP HNL EV+D
Sbjct: 140 EMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           GC+A ID+PDIDL  LME I+GPDFPT  +I+GR+GI+ AYATGRG I +RG + IE+T 
Sbjct: 200 GCIAYIDDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 259

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L DE++R+G R+V+++++ A+A
Sbjct: 260 NGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANA 319

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            VILNQLY+YT LQ    V M+A++   P+  TL  +L+ +V F++EVV RRT+Y L KA
Sbjct: 320 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKA 379

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++RAH+L GL  A   +DE++  IR         +  +   +   D              
Sbjct: 380 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 425

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                       Q  AI++L+L RL GL    I  EL SL  +I++   IL+  +R+L I
Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAI 474

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K ELL +K      RRT I     +++ ED I  E  V T++  GY+KR   + Y+AQR
Sbjct: 475 VKDELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 534

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G SG+  ++ED V ++F+ STH  VLF +  G +++ K + +  GS  ++G  ++N
Sbjct: 535 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVN 594

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE++T ++   +D +  +  YV   TK G ++R  L  +  I +SG I + L+ 
Sbjct: 595 LLQLAEGEKVTNMICQSKD-AEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE 653

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +      +  + +++ T+ GQ +RF     R   GRN  GVR I LA+GD+V+ + I
Sbjct: 654 GDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GRNGHGVRAIRLAEGDEVVGVCI 712

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                            C+E       +
Sbjct: 713 -------------------------------------------------CRE----GGTV 719

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G G+R+    +RI+ R GKGIR  DVS+      + AV  V+D D ++L S +G
Sbjct: 720 LTVTENGKGRRSDIDTYRITARGGKGIRNYDVSR----DKVAAVKIVDDVDDVLLSSQEG 775

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAES 908
            +IR+  NEI + SR   GV +    ++++V+ + R       ++E +D +E+
Sbjct: 776 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDEAQTEKIDASEA 828


>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 745

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/710 (45%), Positives = 476/710 (67%), Gaps = 32/710 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K ARI
Sbjct: 42  NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARI 101

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE R+ K
Sbjct: 102 VGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAK 161

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               LL D+GKDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 162 ITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVDG VA+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G   IE
Sbjct: 222 VVDGIVALIDNPEISIDELIGYIKGPDFPTGGIINGKQGIYDAYKTGRGKLRVAGRVEIE 281

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +   R+ IVVTE+PYQVNK+ ++EKIA+LV++K++  I+DLRDE+DR G R+VIELK+G
Sbjct: 282 TSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLRDETDRDGIRIVIELKKG 341

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +++ILN LY++T LQ+ F V M+AL    P    L  +L+ ++  R EV+ RRT++ L
Sbjct: 342 EESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEFEL 401

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +                 
Sbjct: 402 KKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELIDK----------------- 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q +AIL++RL RLTGL RD I  E N L   I++ + ILS  S++
Sbjct: 445 ---------FEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKI 495

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +  YR
Sbjct: 496 YGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGG G +     ++D V D++I     ++L F++ G V+  KV+ +P    QARGK 
Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NI++L+  E+++TI+   E E + N   + F T++G V++++L+ F  I ++GK A++
Sbjct: 616 IGNIINLDNDEKVSTIIKVREFEKNRN---LFFVTRNGVVKKSELTLFSNIMKAGKRAIR 672

Query: 678 LDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           L+  DE++   + + + E++I   T+ G  ++F    +R   G ++VGVR
Sbjct: 673 LNDDDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSM-GTSAVGVR 721



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 770 EEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
           EE   LK D      + +    +E   ++L   E+ ++T++EKG+ KR +   +R   R 
Sbjct: 501 EEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRG 560

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV-- 881
           G G+ AT+     E   +  ++     D +++ + KG +  + V EI    +  +G +  
Sbjct: 561 GIGVNATNTV---EDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIG 617

Query: 882 -IFSTAKDERVVSVERIRESE 901
            I +   DE+V ++ ++RE E
Sbjct: 618 NIINLDNDEKVSTIIKVREFE 638


>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
          Length = 843

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/889 (41%), Positives = 535/889 (60%), Gaps = 73/889 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL+      LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+  +TVDF  N+DGS QEP V+ AR P +L+NG  GIAVGMATNIP HNL E++DG +
Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259
           A+I NP++    L   + GPDFPTG  ILGR GI+  Y TGRGS+ +RGV+ IE    K 
Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQILGRRGIREMYETGRGSVTMRGVAAIETVEAKG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DR+ +++TE+PYQ NKAA++E+IAELV +K++  IAD+RDESDR G R+VIEL+R A 
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + RRT+YLL K
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVNGEPVLLTLRKMLQVFLDFRVETIERRTRYLLRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R H+L+GL IA+ NLD ++ +IR + +  +AR EL+++                   
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DIL+ + R+ G
Sbjct: 402 -------FGLSEVQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVYG 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I  EL  ++   D+PRRT I++    +ED D I  E  VV ++  GY+KR+P+S + A 
Sbjct: 455 LITDELGVIRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG +G++G   + E+ V      + H S+L FS  G VY    +R+P+ S  A+G  ++
Sbjct: 515 SRGTRGKAGTKTQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+++   E      +  +V  T  G V+R +LS F  I  +G IA+ L+
Sbjct: 575 QLLPIPREEQITSLLAVSE---FTEDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVIS 737
             D +  V      + +L+ ++ G  + F +S   +R   GR + GVR ++L  GDQ++S
Sbjct: 632 EGDALTWVRLAQPGDSVLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M ++    AD   R+      S +      DTEE+      +  EG              
Sbjct: 691 MDVLPVELAD---RVEGSSAASDE-----DDTEEV------APSEG-------------- 722

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            ++L  S  G GKR     FRI  R+G G+RA    +  ++  LV +  +   ++++LVS
Sbjct: 723 PWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFRRDGDV--LVGLRVLGAGEELLLVS 780

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++G ++R+  + +   SRA  GV      K +R+ S +R+ E  +V  A
Sbjct: 781 ERGVIVRMQADAVPQQSRAATGV------KLQRLDSGDRLSEVVLVPPA 823


>gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
 gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
          Length = 816

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/878 (40%), Positives = 517/878 (58%), Gaps = 85/878 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++   +N+ Y K AR+ 
Sbjct: 9   INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSARVV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQ++S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 69  GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TV FRPNYD S QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 129 AGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG +  +DNP  D+  ++ +I GPDFPTGA I G  G+ +AY TGRGSI IRG   +E+
Sbjct: 189 CDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGRGLYDAYTTGRGSIKIRGRVEVEE 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +V+ EIPY +NK++++EKIA L+ + RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 249 RKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLKKGV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            AD+I N LY+YT L++ F +NM+ +   +P    +  +L+ F+A R EV++RRT Y L 
Sbjct: 309 IADIITNALYKYTPLETSFGINMMVVADNRPATLNIQQMLEHFLAHRREVILRRTAYDLR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 369 KSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMER------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL++   L 
Sbjct: 411 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEVLR 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  ++D   TPR+T ++E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 463 GVIRDEIKEIQDRYATPRKTEVLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 522

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 523 QKRGGKGVAGVSTSADDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 582

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +   E  S     Y +F TK G V+R+    +     +G IA+ L
Sbjct: 583 ANLLPMDKEEFVATALAIREFSSER---YFLFVTKRGMVKRSCTELYKNCRSTGIIAVSL 639

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+      ++LL T+ G   RF IS IR   GR + GV+GI+L   D+V + 
Sbjct: 640 KEGDELLTVKEIDDNAEVLLATQQGLSNRFHISGIRP-TGRGAAGVKGIALKGADRVAAG 698

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I                                        + GN   E          
Sbjct: 699 VI----------------------------------------MTGNGRNE---------- 708

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAVFPVNDNDQIILVS 857
            +LTVS  G+GKRTS   + + NR G G+    V+ K  ++   V V P    D ++L++
Sbjct: 709 -VLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGAVMVLP---EDDLLLLT 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
               +IR+ V+ I    RAT+GV++     D+ V   +
Sbjct: 765 SANKIIRLSVSGISSVGRATQGVMLVRMENDDTVTGFD 802



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T+S +G+ KRT   +++   R GKG+     S  + + +  A     ++ Q++L 
Sbjct: 500 EDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQSFCA---TTNHQQLLLF 556

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
           ++ G +  +PV++I    R  KG  I       K+E V +   IRE
Sbjct: 557 TNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIRE 602


>gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 862

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 364/916 (39%), Positives = 541/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
 gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
          Length = 838

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 361/888 (40%), Positives = 531/888 (59%), Gaps = 97/888 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+  ++ Y KCA   G V+G+
Sbjct: 15  MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A++YDAL R+AQ +SLR  L++G GNFGSVDGDPPAA RYTE R+ K +  +L 
Sbjct: 75  YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEARMAKMSLNMLT 134

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD   QEPVVL +R+PN+L NG  GIAVGMATNIP HNL EV++G   
Sbjct: 135 DIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNIPPHNLHEVIEGMKI 194

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           V+ NPD  LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I++R  + IE+  G R 
Sbjct: 195 VMQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKIILRSKTSIEEIKG-RN 253

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+VTEIPY VNKA ++E IA LV++KRI  I DLRDE+ R G R+VIELK+ A+A V+L
Sbjct: 254 CIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMRIVIELKKDANAQVVL 313

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+L+  T LQ    V ++AL    P+  TL  IL+ ++ F+ +V+ RRT++ L KA++R 
Sbjct: 314 NKLFTLTQLQDSVGVILLALVKGVPKVLTLKQILQEYIDFQVDVIRRRTEFDLKKAKERE 373

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+DEV+ I++ S N    ++ LM R                        
Sbjct: 374 HILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFG---------------------- 411

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS++Q   I ++ L RLTG+ R  I +EL  +  ++ +  DIL++  R+L II +E
Sbjct: 412 ----LSDIQAEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDIIIEE 467

Query: 505 LLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           + +++++    RRT+I  V G +D+ED   I  E+ VVT +++GY+KR+P+SVY+AQ RG
Sbjct: 468 VEAIQEKYGDERRTQIENVSGEVDIED--LIPVEESVVTYTNVGYIKRMPISVYKAQNRG 525

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG +G+  R++D VT++ + S+H ++LF ++ G  YK K + LP GS  +RG  + N+L
Sbjct: 526 GKGVTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLL 585

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L+    I  ++     E   ++ Y+V  TK G ++R  LS +  + + G IA+ LD  D
Sbjct: 586 ELSDDNLIAAMIKV---EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGD 642

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI  V      N++L+ T  G  +R   + +RV + R + GVR I L +GD         
Sbjct: 643 EIAGVRLTEGNNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKL-RGDD-------- 692

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                      Y+  M+  R   S                                 +LT
Sbjct: 693 -----------YVVSMARIREGAS---------------------------------VLT 708

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           VSE G G+R     + + +R G G+    ++  N  G +  +  V+++D II++S  G +
Sbjct: 709 VSETGLGRRVELESYPVRHRGGSGV----LNYKN--GDVCGIKVVDEDDDIIMISSDGIV 762

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IR+   +I +  R ++GV +     D +VV+  R   +E  D AE  E
Sbjct: 763 IRLRACDISMMGRYSRGVRLMKVTGDNKVVTFTR---TEHDDNAEIAE 807


>gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3]
 gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3]
          Length = 834

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 365/895 (40%), Positives = 519/895 (57%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 13  IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+ AIYD L R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+
Sbjct: 73  RVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 133 APLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +D+PD      L+AL+ +I+GPDFPT  +I+GR GI+ AY TGRGSI +R
Sbjct: 193 REVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIVGRNGIEEAYRTGRGSIRMR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R Q+VVTE+PYQVN   + EKIAELVR+ R+  IAD+RDE S R G R+
Sbjct: 253 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGIADVRDETSARIGQRL 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L  +++ +V  + +V+V
Sbjct: 312 VIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQMVRYYVEHQIDVIV 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R          
Sbjct: 372 RRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARGQLMER---------- 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RL  L R  I +E   L  +I +   I
Sbjct: 422 ----------------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKISDLEAI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S +R   II +EL  V ++    RRTR+V    DM  ED I +ED+VVTV+  GY KR
Sbjct: 466 LASPTRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQEDVVVTVTRGGYAKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+QRRGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +
Sbjct: 526 TKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQA 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + NIL+  Q ERI  ++   + E++    Y+V ATK G  ++  L DF     
Sbjct: 586 RSAKGQHVANILAFGQDERIAEVIAVKDYEAAP---YLVLATKRGLCKKTALHDFDSNRA 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G +A+ L   DE+++       +D+LL ++  Q +RF     ++   GR + GV G+  
Sbjct: 643 GGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRF 702

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+++SM +V                       + G T +                  
Sbjct: 703 DAEDELLSMDVV-----------------------VPGTTAD------------------ 721

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +  G+ KRT   ++ +  R GKG+    +  ++  G LV    V+ 
Sbjct: 722 ----------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVDP 769

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +DQ+  ++  G ++R    ++R A R T GV +       +VV V R  ++E  D
Sbjct: 770 DDQLYAIASNGGVLRTVAKDVRRAQRQTMGVRLIDLESGVQVVGVARNADAEDTD 824


>gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 856

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 349/891 (39%), Positives = 529/891 (59%), Gaps = 90/891 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +  N K+ KCA
Sbjct: 9   IVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +ISG+  G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGDPPAA RYTE RL
Sbjct: 69  KISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L+DDL KDTV+  PNYD + +EP V  +++PN+L NG  GIAVGMATNIP HNL
Sbjct: 129 TTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++   + +++NP   +D +M+++ GPDFPTG +I G  GIK A+ TGRG +++RGV  
Sbjct: 189 NELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMICGYRGIKEAFHTGRGKLILRGVIR 248

Query: 256 IEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +E+   + DR ++ + EIPY VNK+ ++E IAEL+  K I  I+DLRDESD+ G R+VIE
Sbjct: 249 VEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMRIVIE 308

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG   +VI+NQLY+++ LQ  F  NM+AL+   P    +  ++  ++  R +VV RRT
Sbjct: 309 LKRGEVPEVIINQLYKFSDLQITFGCNMLALDKGLPRTMNVKQLISVWIEHRIDVVRRRT 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  RAH+L G   A+ +LDEVVR+IR S N + AR EL+++             
Sbjct: 369 RFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQ------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AIL+LRL +LTGL RD I +E   L  +I     +L+S
Sbjct: 416 -------------FEFTERQANAILDLRLYQLTGLERDKINDEYQELLKKIDYLRAVLAS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + +  II++ELL ++    + R+T+I+    ++  ED I  E +++T+S   Y+KR+P+
Sbjct: 463 EAMVKEIIREELLDIQKHHKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIKRMPV 522

Query: 554 SVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + +R QRRGG+G +G+ + R+ED +  L++ +TH  +L F++LG  Y  KVW++P    +
Sbjct: 523 NTFREQRRGGQGVTGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRK 582

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           ++GK LIN+L  +   E+I TI      E       ++ ATK   V+++ L++F    R 
Sbjct: 583 SKGKPLINLLEDIRPEEKIATIQRVSSFEEE---ACILMATKRAVVKKSLLNEFSNPRRK 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-A 730
           G  A+ +D  DE+++      E  ++L T  G  VRF  S +R   GR + GV+G +L  
Sbjct: 640 GIWALDIDEGDELVAARLVKPEQQVMLFTHQGMAVRFEESNVRPM-GRTARGVKGATLRG 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D ++   +V                        +GD                      
Sbjct: 699 ENDYIVGCEVV------------------------NGD---------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + IL V E GFGKR+   DFR +NR G G+R+   S+ N  G ++    V D 
Sbjct: 713 -------ESILVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERN--GKVIGALCVTDE 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D ++++S  G  +R+ +N++R+  R T+GV + +  +++ +V++++++ SE
Sbjct: 764 DGMVMMSATGQTVRINMNDLRVMGRNTQGVKLANLKENDYLVAIQKLQGSE 814


>gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
 gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
          Length = 862

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 366/916 (39%), Positives = 545/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D +L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R   HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKIHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR   ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREVMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S   L  +I+ EL  ++++ D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSEILLENLIRDELKEIRNKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  +   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT--------------------- 699
           LS++  I   G  A+ LD  DE+++     + E++ILL+                     
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEILLSGSEENLENQEIKNLDDENLEN 686

Query: 700 --------------TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                         TK G C++FP++ +R   GR S GV  I   + +  +  AIV+  D
Sbjct: 687 EESASIKGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAIVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL+VS 
Sbjct: 746 ---------------------------------------------------EQEILSVSA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 835

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 347/912 (38%), Positives = 552/912 (60%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDE------EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++H   ++E       +   I  V++++EM+ S+L+YA++VI+ RA+PD++DGLKPV R
Sbjct: 1   MSDHKTQNNEANIHKPHDHGKIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++GV  +  Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++G 
Sbjct: 61  RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K A  L+ ++ K+T+DF  NYDG+ +EP+VL    PN+
Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IPTHNLGEV+DG +  I+N DI +D LM+ I+GPDFPTG  +LG 
Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +K+AY TG+G+++++  SH+ +  G +  I+VTEIPYQV K  ++EKIA LV+ K + 
Sbjct: 241 QSLKSAYHTGQGAVILKAKSHVLEERG-KTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDES R+G ++VIELKR A+A +ILN+LY+++ L+  F +NMVAL G  P+  +L
Sbjct: 300 GITDLRDESSRKGMKIVIELKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+AF  FR EV+ R+  + L KA  R H++  L   + +++  +++I+ S + + A+
Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQ 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           R+LMQ+ +N                           E+Q++AILE+ L RL+      + 
Sbjct: 420 RKLMQK-YN-------------------------FDEIQSKAILEMSLQRLSNQETQKLI 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCI 533
            E  +L  EI EC  I+ S+ +   I+++ELL +K +    R+T +  +  L+ EDED I
Sbjct: 454 TEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ++ +++T+++ GY+K + +  Y+ Q+RGG+G SG+ + +EDF+  L I STH   LFF+
Sbjct: 514 EKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + +P+G  Q++G  L+N L   + E +T+       + S +  Y+ FATK
Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQD--YLFFATK 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L ++  I++ G IA++L   DE+L+V+  T   +I+L +  G  + F  + I
Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKI 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  + RNS+GV G+ L   D+ +  A +   D+                           
Sbjct: 692 KSIS-RNSMGVIGMRLG-SDEFLVGAALFDVDS--------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 KEQ IL ++E GFGK T+   +RI  RSGKG +   V+
Sbjct: 723 ----------------------KEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVN 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892
             ++ G L+ +  V  +D +I+ SDKG ++RV +++I +  ++AT+G  I       + V
Sbjct: 761 --DQKGRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818

Query: 893 SVERIRESEIVD 904
           SV  +++ E++D
Sbjct: 819 SVAVVKK-EVLD 829


>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
          Length = 808

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 356/888 (40%), Positives = 521/888 (58%), Gaps = 92/888 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  V +  EM++SYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+  N+ Y
Sbjct: 3   EKNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R  LI+G GNFGS+DGD PAA RYT
Sbjct: 63  RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  L+ D+ KD VDF PNYD S +EPVVL  + P +L+NG  GIAVGMATNIP
Sbjct: 123 EVRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +I+ P+ +++ L+  I+GPDFPTG  I+G  GI+ +Y TG+G +++R
Sbjct: 183 PHNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTKGIRESYLTGKGKLIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+T    + I++ EIPY VNK+ +L +IAELV+E++I  I DLRDESDR G RVV
Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+     +++NQLY++T LQ+ F V M+A+   +P+ F L  +L  F+  R+ VV R
Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQPKVFNLKELLNIFLEHRKNVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KAR RAH+L GL IA+ +LDEV+ IIR S N E AR +LM +           
Sbjct: 363 RTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+++Q +AIL++RL +LT L ++ +  E+N +   I +   IL
Sbjct: 412 ---------------FKLTQIQAQAILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
                L  +I +EL  +K +    R+T I E    D+  ED +     VV ++   Y+KR
Sbjct: 457 KDEKELWRVISEELKEIKRKYADERKTLIEEEEKSDITIEDILPDNPEVVCITQDSYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS Y+ QRRGGKG + +   ++D +T   + ST +++  FS+ G VY  K + L   S
Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETS 576

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            Q++G  +   L+++  E+IT I+    FP+      NLY  F T  G V++  + +F  
Sbjct: 577 RQSKGVPIKEYLNIDNDEKITEIISVNEFPK------NLYFFFVTSKGIVKKTSIEEFEN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +SG  A+KL   D +++V   +  ++I++ TK G  +RF    +R   GR + GV GI
Sbjct: 631 VRKSGIYAIKLGEEDYLVNVFLTSGNDEIMIFTKKGNAIRFHEKDVREM-GRIAQGVIGI 689

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D VI                                              G I +
Sbjct: 690 KLRKDDSVIG---------------------------------------------GVIFK 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           E  Q        I+ V+  G GKR +  +F +  R G G+RA  ++   + G LV V  V
Sbjct: 705 ESKQ--------IVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITP--KTGDLVGVKNV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++ND+I++ + +G +IR+PVN I I SR ++GV +    +D+ VVS++
Sbjct: 755 SENDEILISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSID 802



 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           K  +   V+ KG  K+TS  +F   N    GI A    K+ E   LV VF  + ND+I++
Sbjct: 607 KNLYFFFVTSKGIVKKTSIEEF--ENVRKSGIYAI---KLGEEDYLVNVFLTSGNDEIMI 661

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + KG  IR    ++R   R  +GV+     KD+ V+     +ES+
Sbjct: 662 FTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDDSVIGGVIFKESK 707


>gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
 gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
          Length = 861

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 370/902 (41%), Positives = 550/902 (60%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I +V ++ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEFKENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQDWS R  L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++NPD     LME I GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     +E+I+V E+PY VNKA ++E+IA+L R+KRI  I DL DESDR G R
Sbjct: 243 VRAKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ TS+Q+ F  NM+A+    P+  +L  IL+ ++  +E V+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y   KA  RAH+L GL IA+ +++E++RIIR S   + A+  L++          
Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE Q +AIL++R+ RLTGL RD I +E   L   I++  D
Sbjct: 413 ----------------TYGLSEKQAQAILDMRMVRLTGLERDKIESEYTELIALIEDMAD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II+ ELL V+++    RRT ++ G +L +EDED I  ED+V+T++  GY+
Sbjct: 457 ILAKPERIHKIIETELLEVQEKFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S +++QRRGG+G  G+ + D+DF+  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPSSEFKSQRRGGRGIQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++ GE +  ++    +  + + LY+ F T+ G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSGETVQAVINVRGE--AEDGLYLFFTTRLGTVKRTDVKAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++SV     + +I++ T +G  V F    +R   GR + GVRGI 
Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDENIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI + +                                  LK DS V       
Sbjct: 694 LRENDYVIGVDL----------------------------------LKEDSEV------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L ++EKG+GKRT + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 713 ------------LIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L+++ G +IR  V+ +    RAT GV +   A++ +V ++ ++    I DE + 
Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEEVKVSTMAKVDAEVIEDEIDE 818

Query: 909 TE 910
           TE
Sbjct: 819 TE 820


>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
 gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
          Length = 811

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 363/895 (40%), Positives = 523/895 (58%), Gaps = 87/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E +G+  ++I +EM++ Y+ YA++VI+GRAIPD RDGLKPVHRR L+ M +MG   +K Y
Sbjct: 4   EGEGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGKYHPHG++AIYD L +MAQ +S R +L++GQGNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL D+ K TVDF PN+D S QEP VL AR PN+LVNG  GIAVGMATN+P
Sbjct: 124 EARLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV +    VID+     + LM+++ GPDFPTG +++G  GI++AY TGRG  V+R
Sbjct: 184 PHNLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGTAGIRDAYLTGRGKCVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV+ IE+  G   QI++TEIP+QVNKA ++E IA LVR+KRI  I D+RDESDR G R+V
Sbjct: 244 GVAEIEE-EGRTPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKRGA+  VILN LY++T+L+S F +  +A+   +P    L  I+  F+  R +VV R
Sbjct: 303 VELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQPRTLNLKEIIHEFLKHRVDVVRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L K  +R H+L GL +A+ N+D V+  IR S   + A++ L+ +           
Sbjct: 363 RTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L EVQ  AIL+++L RL  L    I +E +++  EI+    IL
Sbjct: 412 ---------------FALDEVQADAILKMQLRRLAALEHQKILDERDAIAAEIERLSAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S + +L  IK+EL+ +       RRTRI +     + ED I  + ++V+++   YVKR+
Sbjct: 457 ASEASILAEIKKELVDIGARFGDERRTRIAQAAEAFDREDLIEDKPVLVSLTSSNYVKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  YR QRRGG G  G+  +D D V  +F+ + H ++L F+  G +Y  K++ LP G  
Sbjct: 517 DLDTYRNQRRGGHGVIGMATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
             +GKAL+N+L+L+  ER+TT++P  E        ++ FAT++G V +  L +F +  ++
Sbjct: 577 TGKGKALVNLLNLDGEERVTTVIPVREYRPDH---HLFFATRNGTVAKMALDEFSRPRQT 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   D ++ V+      +++LTTK GQ +RF   A+R    RN++GVRGI L  
Sbjct: 634 GINAINLRDGDALVDVKATDGNQELILTTKFGQSLRFHEEAVRPVH-RNAMGVRGIKLRH 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD + ++AIV                                              E   
Sbjct: 693 GDALQAIAIV----------------------------------------------EDDH 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            L + EQ        G+GKRT   ++R   R   G+R   V      G +V    V+D+D
Sbjct: 707 LLTITEQ--------GYGKRTEFDEYRGHGRGTLGVRNIVVDA--RAGNVVGSMAVSDDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +II++S  G +IR  V+EI I  R T+GV +      +RV+    +   E  +EA
Sbjct: 757 EIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDRVIGFTILDSEEPEEEA 811


>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 818

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 366/889 (41%), Positives = 524/889 (58%), Gaps = 87/889 (9%)

Query: 11  EEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE KG +  +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  ++
Sbjct: 2   EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KC RI G+V+GKYHPHG+ +IYDAL R+AQD+S+R  ++  QGNFGSVDGDPPAA R
Sbjct: 62  AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ + A  +L D+ K+TVD+ PNYD S QEP+VL   +P +L NG  GIAVGMATN
Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV    VA I++ +I +D LM+ I+GPDFPTG +I GR GIK A+ TG+G I 
Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIFGRRGIKQAFRTGKGKIT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE T   +++I+VTEIPY VNKA ++ KIA+LV+EKRI  I+DLRDESDR G R
Sbjct: 242 VRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG    V+LNQL+ +T+LQ  F+V  +AL    P++  L  ++  FV  R EVV
Sbjct: 302 IVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGMPKQLNLKELVHYFVRHRVEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L GL IA+ N+DEVV+II+ S +   AR  LM+R         
Sbjct: 362 TRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL +LT L    I  EL  +   I    D
Sbjct: 413 -----------------FKLSERQSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKD 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +LSS  ++LG+++ E   +  +    R+T IV + + ++  ED I +EDMVV VS+ G++
Sbjct: 456 LLSSEQKILGVVRDETEEIAQKYGDDRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP+S YR Q RGGKG S   + +EDF+  LFI STH  +LF ++ G  Y  KV  +P 
Sbjct: 516 KRVPVSSYRNQGRGGKGSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  +RG  +  +L ++  E ITTI+   E        Y+  AT  G V++ K SDF   
Sbjct: 576 GSRASRGTHIKALLEISANEDITTIVSLQEFSEEH---YLFMATARGIVKKVKTSDFRNA 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+KLD+ D +++      +++I++ ++ G  +RF    +R   GR S GV GI 
Sbjct: 633 RTRGIIAIKLDNGDTLITAVLTRGDSEIVIVSRNGNALRFHEDQVRAM-GRASRGVTGIR 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+   +A +L  +                      D E++                
Sbjct: 692 LQSDDE---LAGILRVE----------------------DNEKM---------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L +SE G GKR     F +  R  +G  A   S+ +  G +V V  V 
Sbjct: 711 ------------LLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERS--GEIVGVLSVL 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + D ++ ++ +G  I++ V+++ +  +  +GV I +    + VV V R+
Sbjct: 757 EEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARV 805


>gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec]
 gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec]
          Length = 837

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 367/888 (41%), Positives = 515/888 (57%), Gaps = 91/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 13  IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIYD L R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+
Sbjct: 73  RVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 133 APLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +D+P+      L+AL+ II+GPDFPT  +I+GR GI++AY TGRGSI +R
Sbjct: 193 VEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIVGRNGIEDAYRTGRGSIRMR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R Q+VVTE+PYQVN   + EKIAELVR+ ++  I+D+RDE S R G R+
Sbjct: 253 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIGQRL 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L  ++  +V  + +V+V
Sbjct: 312 VIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQMISYYVEHQVDVIV 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + E AR +LM R          
Sbjct: 372 RRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARGQLMAR---------- 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RL  L R  I +E   L  +I E   I
Sbjct: 422 ----------------FSLSEIQATAILDMQLRRLAFLERQRIIDEAAELRAKIDELEAI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   II QEL  V ++    RRTR+V    DM  ED I RED+VVTV+  GY KR
Sbjct: 466 LASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +
Sbjct: 526 TKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQA 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + NIL+ +Q ERI  +M   + +++    Y+V ATK G  ++  L+DF     
Sbjct: 586 RSAKGQHVANILAFSQDERIAEVMAIQDYQAAP---YLVLATKRGLCKKTALTDFDSNRA 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G +A+ L   DE++S       +D+LL ++  Q +RF     ++   GR + GV G+  
Sbjct: 643 GGLVAINLRDDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRF 702

Query: 730 AKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + D+++SM  +V  + AD                                         
Sbjct: 703 DEADELLSMDVVVPESPAD----------------------------------------- 721

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L  +  G+ KRT   ++ I  R GKG+    +  ++  G LV    V 
Sbjct: 722 -----------LLVATSGGYAKRTPLAEYPIQGRGGKGVLTAKI--VSTRGGLVGALVVE 768

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            NDQ+  ++  G ++R    ++R A R T GV +       +VV V R
Sbjct: 769 PNDQLYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVAR 816



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 111/236 (47%), Gaps = 23/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           + LD  DE++++    +  ++      GQ + RF +S I+  A  + + +R ++  +  +
Sbjct: 393 IALDHLDEVIALIRNAESAEV----ARGQLMARFSLSEIQATAILD-MQLRRLAFLERQR 447

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEE 788
           +I  A  L A  D  E I  +     QR +I  +  E+     D         EG++S  
Sbjct: 448 IIDEAAELRAKIDELEAI--LASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMS-- 503

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++TV+  G+ KRT +  +R   R GKG++    + + E   +   F   
Sbjct: 504 -VEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQG---AALREDDIVEHFFVTT 559

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +  ++  ++KG + R   +E+   +R+ KG     I + ++DER+  V  I++ +
Sbjct: 560 THHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDYQ 615


>gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3]
          Length = 860

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 358/893 (40%), Positives = 533/893 (59%), Gaps = 89/893 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + +  Y K A   G 
Sbjct: 20  VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + A 
Sbjct: 80  VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  GIAVGMATNIP HNL EV+D
Sbjct: 140 EMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           GC+A ID+P+IDL  LME I+GPDFPT  +I+GR+GI+ AYATGRG I +RG + IE+T 
Sbjct: 200 GCIAYIDDPEIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 259

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L DE++R+G R+V+++++ A+A
Sbjct: 260 NGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANA 319

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            VILNQLY+YT LQ    V M+A++   P+  TL  +L+ +V F++EVV RRT+Y L KA
Sbjct: 320 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKA 379

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++RAH+L GL  A   +DE++  IR         +  +   +   D              
Sbjct: 380 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 425

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                       Q  AI++L+L RL GL    I  EL SL  +I++   IL+  +R+L I
Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAI 474

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K ELL +K      RRT I     +++ ED I  E  V T++  GY+KR   + Y+AQR
Sbjct: 475 VKDELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 534

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G SG+  ++ED V ++F+ STH  VLF +  G +++ K + +  GS  ++G  ++N
Sbjct: 535 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVN 594

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE++T ++   +D +  +  YV   TK G ++R  L  +  I +SG I + L+ 
Sbjct: 595 LLQLAEGEKVTNMICQSKD-AEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE 653

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +      +  + +++ T+ GQ +RF     R   GRN  GVR I LA+GD+V+ + I
Sbjct: 654 GDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GRNGHGVRAIRLAEGDEVVGVCI 712

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                            C+E       +
Sbjct: 713 -------------------------------------------------CRE----GGTV 719

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G G+R+    +RI+ R GKGIR  DVS+      + AV  V+D D ++L S +G
Sbjct: 720 LTVTENGKGRRSDIDTYRITARGGKGIRNYDVSR----DKVAAVKIVDDVDDVLLSSQEG 775

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAES 908
            +IR+  NEI + SR   GV +    ++++V+ + R       ++E +D +E+
Sbjct: 776 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDEAQTEKIDASEA 828


>gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
 gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
          Length = 824

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 363/905 (40%), Positives = 539/905 (59%), Gaps = 90/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM+ I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++  ++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPIVNLLQLEKGEKVQAVVNIPE---GADDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R   GR + GV
Sbjct: 632 FANIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFNESDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++   D                                       
Sbjct: 691 RGINLRPEDYVVGSGVLGAND--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                 Q L + E+        G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 712 ------QVLVISEK--------GYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RES 900
             ++ ++ I++++  G +IR    ++   SR+T GV +     D RV S+  +     + 
Sbjct: 756 IVLDSDEDIMVITTDGIMIRFKTADVSQTSRSTIGVRLIKVNDDSRVASLTIVPTEAEQD 815

Query: 901 EIVDE 905
           EI DE
Sbjct: 816 EIGDE 820


>gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40]
 gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A
 gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus]
 gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 862

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 380/937 (40%), Positives = 558/937 (59%), Gaps = 128/937 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I SS+++    I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENIFSSNQD----IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  ++GQGNFGSV
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M  I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIEK   +++ IVV E+PYQVNKA +   IA+LV+EK I  I+++R
Sbjct: 237 YKTGRGRIKLRAKTHIEKKP-NKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK 
Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +
Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q+ AIL++RL++LTGL R+ +  EL  +
Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI 449

Query: 481 GIEIKECLD-ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
            +E+ E LD IL S + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MV
Sbjct: 450 -LELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMV 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F   +H +++F +  G +Y
Sbjct: 509 VTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVR 658
             KV+++P GS  A+GKA++N++SL   E+I  I+P  + DES      + F TK+G V+
Sbjct: 569 WLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKS----LAFFTKNGIVK 624

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV------------------------ETCTQEN 694
           R  LS+F  I   G  A+ LD  DE+++V                        +T +++N
Sbjct: 625 RTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDN 684

Query: 695 D---------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHA 744
                     +   TK G C++F ++ +R   GR S GV  I   +  D+V+   ++   
Sbjct: 685 SENSLESGKMLFAVTKKGMCIKFALNKVRQI-GRVSRGVTAIRFKENLDEVVGAVVI--- 740

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                          +NDS                  Q IL+VS
Sbjct: 741 -------------------------------ENDS------------------QEILSVS 751

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           +KG GKRT++ ++R+ +R GKG+    ++   +   LV V  V++   ++ ++  G +IR
Sbjct: 752 QKGIGKRTTADEYRLQSRGGKGVICMKLTP--KTKDLVGVVMVDEEMDLMALTSSGKMIR 809

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V +  IR A R T GV++ +   DE VVS+ R  + E
Sbjct: 810 VDMQSIRKAGRNTSGVIVVNVDGDE-VVSIARCPKEE 845


>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
 gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 865

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 352/877 (40%), Positives = 535/877 (61%), Gaps = 66/877 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + 
Sbjct: 14  EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G  ++I+NP I+   L EII+GPDFPTG  ILGR GI+  + TGRGSI 
Sbjct: 194 IPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQILGRDGIRETFKTGRGSIT 253

Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK++  I+D+RDESDR
Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F+ FR
Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +AR +L       +
Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQ------N 427

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D K                    LS +Q  AIL+++L RLT L  D I+ E N L  +I 
Sbjct: 428 DHK--------------------LSSIQADAILQMQLRRLTALEADKIKGEHNDLTQKIN 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL+S+ R+  II +EL  + +   +PR+T I++    ++D D I  E  VV ++  
Sbjct: 468 LYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANERSVVLLTEA 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + +  RG +G++G   +++D V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDKGVAYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+ S  A+G   + +L + + E+IT+I+     +S  ++ Y++  TK G ++R  LS F
Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSIVAV---DSFVDDSYLLMLTKAGFIKRTALSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V    + + +L+ +K G  + F   I+ +R   GR + G
Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGMAIHFRLDINELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ ++L +GD ++SM ++    AD   +I Y K             E++     D +VE 
Sbjct: 704 VKSMNLREGDNLVSMDVLTSNLADQLAKIEYPK-------------EDL-----DDNVEE 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N S+           ++L  S  G GKR     FR+  R+G G+RA       +   LV+
Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRI--KYDQLVS 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  + + ++++LV++KG ++R   ++I   SRA  GV
Sbjct: 795 LKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGV 831


>gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
 gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
          Length = 829

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 370/893 (41%), Positives = 541/893 (60%), Gaps = 96/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    K+ K A
Sbjct: 10  IQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHGAKFKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 70  RIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP HN 
Sbjct: 130 TKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHNP 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G  A++ NPDI L  LME I+ PDFPTG +I G+ GI +AY TGRG I +R  +H
Sbjct: 190 REILTGLKALLANPDISLVELMEFIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVRAKTH 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  +E IV+ E+PYQVNKA ++E IA LV++K I  ++++RDESDR G RVVIELK
Sbjct: 250 IEQKS-KKEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGMRVVIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ TS+Q+ F + M+++   +P  F +I ILK F+  R+ +++RRT +
Sbjct: 309 RDAMSEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGIITILKHFINHRKTIIIRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL  A++ +++V+R+IR S N E A+  L+   ++ SDI        
Sbjct: 369 DLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVS-EFDFSDI-------- 419

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                            Q  +I+ +RL RLTGL  + I NEL  L   I+    IL S  
Sbjct: 420 -----------------QAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESILRSEE 462

Query: 496 RLLGIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L  II +E   V D   +  RRT I +   D++ ED I  E MVVT++H GY+KRVPL+
Sbjct: 463 VLHSIIAEEFDEVLDTYGSNERRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLT 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +Y  Q+RGGKG++ V   ++DF+   F  +TH ++LF +  G ++  KV+++P GS  A+
Sbjct: 523 LYEKQKRGGKGKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRIAK 582

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           GKA++N+L+L   ERI +I+P   F ED+       +VF T+ G V+R  LS+F  I  +
Sbjct: 583 GKAVVNLLNLMADERIRSIIPTTDFSEDKG------LVFFTQKGVVKRTNLSEFSNIRSN 636

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  D +++ +   Q    + + TKL QC++F I   R   GR++ GVRGI   
Sbjct: 637 GVRAIVLDEDDALITAKIADQSIKYLFIMTKLAQCIKFDIEKTRE-QGRSTRGVRGIKF- 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                                    KH                    D  ++ NI     
Sbjct: 695 -------------------------KH------------------PEDEVIDANI----- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849
             +   EQ IL V+EKG GKRT + ++R++NR G G+ A  ++  ++ G  +V    V++
Sbjct: 707 --IANDEQEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMT--SKTGKYVVGCLMVDE 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +  ++ ++  G +IRV +  I  +SR T GV I    K + V +V R  +  I
Sbjct: 763 SMDMMALTKAGKMIRVDMQTISKSSRNTSGVYI---VKGDDVANVSRCPKQPI 812


>gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 852

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 359/885 (40%), Positives = 536/885 (60%), Gaps = 84/885 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +VS+ DEM+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K + K ARI
Sbjct: 14  TVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIGVTPDKPHKKSARI 73

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSVDGD  AA RYTE R+ K
Sbjct: 74  VGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYTEARMSK 133

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  +L D+ KDT+DF+ NY    +EPVVL AR+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 134 ISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAVGMATNIPPHNLGE 193

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D    ++ NPD+ +D LME++ GPDFPTGA+++G++GI+ AY TGRG I++R    IE
Sbjct: 194 VIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVMGKSGIRRAYQTGRGKILVRSKVDIE 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           + + DRE+IVVTEIPY VNKA ++++IA+L R+KRI  I    DES R+G R+VIE++R 
Sbjct: 254 QLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDESGREGMRIVIEVRRD 313

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            SA V+LN LY+YT +Q  F  NM+A++   P+   L  IL  ++  + EV+ RRT+Y  
Sbjct: 314 TSASVVLNNLYKYTPMQVSFGFNMLAIDKGVPKILNLKEILSKYLDHQVEVIRRRTEYDK 373

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA +RAH+L GL IA+ ++DE++ IIR S + + A++ELM R                 
Sbjct: 374 RKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNRYE--------------- 418

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LS+VQ +AIL++RL RLTGL RD I  E   L   I+   +IL S+ R+
Sbjct: 419 -----------LSDVQAQAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTEILGSQERI 467

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
             II+ EL  ++      RRT +  G + D+EDE  I  ED+++ +++ GY+KR+    +
Sbjct: 468 FQIIEDELNEIRTRFGDARRTELHIGEITDIEDESLIEEEDVLIALTNKGYIKRMTQDEF 527

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             Q RGG+G  G+ + D D +  L   STH ++LFF++ G VY+++ + +P     A+G 
Sbjct: 528 SVQNRGGRGVKGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGL 587

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN++ +++GE +  ++    D+ + +  Y+ F TK G V+R   S++  I  +G IA+
Sbjct: 588 PIINLIKIDKGEEVKAMISI-SDQDTDHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIAL 646

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D +++V        I++ T  G  + F  S +R   GR + GVRG+ L   D V+
Sbjct: 647 NLKEDDSLVAVMETDGNKPIIIGTHEGNAISFLESDVRAM-GRTATGVRGVRLRDDDYVV 705

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
              I+                                       VEG+            
Sbjct: 706 GADIM---------------------------------------VEGS------------ 714

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L +++KG+GKRT    + I NR G G++ +++S+  + G L  +  V  ++ I+++
Sbjct: 715 --DVLVITDKGYGKRTPVEQYSIKNRGGLGVKTSNISE--KSGKLAGLLVVEGHEDILVM 770

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++G  IR+ V  I  +SRAT GV +    ++  V S+  I ESE
Sbjct: 771 TNQGVAIRMKVEGISQSSRATLGVRMIRLDQEAVVSSITTILESE 815


>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
 gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
          Length = 894

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 354/892 (39%), Positives = 541/892 (60%), Gaps = 92/892 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G++ + +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+  + ++ K 
Sbjct: 70  GLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSSQHRKS 129

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD  AA RYTE R
Sbjct: 130 ARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMRYTEAR 189

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +LD + KDTV+F  NYD S  EPVVL +R+PN+LV+G  GIAVGMAT IP HN
Sbjct: 190 MSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATEIPPHN 249

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E ++  +A   NP+I    LME I+GPDFPTGA ILG  GI +AY TG+G I +R  +
Sbjct: 250 LTETINATIAFARNPEITTKELMEHIKGPDFPTGATILGVKGIYDAYETGKGKIPLRSQA 309

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+ +  + +I++TEIPY V K  ++EKI EL ++K +  I +LRDES+R+G R+VI++
Sbjct: 310 KIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIRIVIDV 369

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G +A ++LN+LY+ + LQ+  + N+VAL   +P+   L  IL  ++  + EVV RR K
Sbjct: 370 KKGYNAHILLNKLYQKSYLQTNVNANLVALVHGEPKLLNLKQILSIYLDHQIEVVTRRLK 429

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+D+ H+L GL IAV+N+DEVV+II+ S N   A+  L +R +N           
Sbjct: 430 FDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKR-FN----------- 477

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ QT+AIL++ L RLTGL  + +  E++ L  EI     IL SR
Sbjct: 478 --------------LSDRQTKAILDMNLRRLTGLNIEKMNLEIDELNKEISYLKGILESR 523

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             L+ +I  EL  ++D     RRT+I E  +  + DED I   ++V+T S  GYVKR+ L
Sbjct: 524 EALINLIIDELSEIRDRFGDERRTQIDEFTVSSISDEDLIPVNNIVITTSVKGYVKRMKL 583

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y  Q RGG G S +   D+D ++ +   +THT ++ F++LG VY+ +  ++P GS Q+
Sbjct: 584 EDYNMQNRGGIGVSTMKTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQS 643

Query: 614 RGKALINIL-SLN--QGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669
           +G   INI+ SLN  +GE++ +++   E    +N + ++V  T+ G +++  LS++  I 
Sbjct: 644 KGTPFINIIPSLNEKEGEKVVSLLSVDE----YNDDHFLVTITEKGVIKKTALSEYESIR 699

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GK A +L   D +++    T EN+IL+ +     V+F    +R  + RNS GVRGI L
Sbjct: 700 SNGKNAFRLKEDDHLVNAFIVTDENEILIASNGKNVVKFSSLDLRPLS-RNSQGVRGIRL 758

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +  +VI+      A +D D                                        
Sbjct: 759 DENKKVIA------ASSDLD---------------------------------------- 772

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   +FIL++  KGFGK T S +FR+  R GKG+ A +  K    G L+    VN 
Sbjct: 773 -------GEFILSIGTKGFGKLTHSDEFRLIKRGGKGVTAINADK---AGDLIFAKFVNK 822

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ND+ ++++  GT IR+ ++++ + SRATKGV I +  +++ +++VE ++  E
Sbjct: 823 NDEALIITSSGTTIRISISQLSVTSRATKGVKIINLRENDEIIAVEIVKTEE 874


>gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 864

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 357/890 (40%), Positives = 528/890 (59%), Gaps = 87/890 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + +  Y K A   G 
Sbjct: 24  VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGA 83

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + A 
Sbjct: 84  VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 143

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  GIAVGMATNIP HNL EV+D
Sbjct: 144 EMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 203

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           GC+A ID+PDIDL  LME I+GPDFPT  +I+GR+GI+ AYATGRG I +RG + IE+T 
Sbjct: 204 GCIAYIDDPDIDLPGLMEYIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 263

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L DE++R+G R+V+++++ A+A
Sbjct: 264 NGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANA 323

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            VILNQLY+YT LQ    V M+A++   P+  TL  +L+ +V F++EVV RRT+Y L KA
Sbjct: 324 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKA 383

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++RAH+L GL  A   +DE++  IR         +  +   +   D              
Sbjct: 384 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 429

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                       Q  AI++L+L RL GL    I  EL SL  +I+    IL+  +R+L I
Sbjct: 430 -----------PQADAIVKLQLGRLAGLEILKIEEELASLQAKIENWEAILADDARVLAI 478

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K+ELL +K      RRT I     +++ ED I  E  V T++  GY+KR   + Y+AQR
Sbjct: 479 VKEELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 538

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G SG+  ++ED V ++F+ STH  VLF +  G +++ K + +  GS  ++G  ++N
Sbjct: 539 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGSNIVN 598

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE++T  M     E+     +V   TK G ++R  L  +  I +SG I + L+ 
Sbjct: 599 LLQLAEGEKVTN-MICQSKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE 657

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +      +  + +++ T+ GQ +RF  +  R   GR+  GVR I LA+GD+V+ + I
Sbjct: 658 GDALAWTRLTSGHDMLIVATRNGQAIRFNEADARPM-GRSGHGVRAIRLAEGDEVVGVCI 716

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                            C+E       +
Sbjct: 717 -------------------------------------------------CRE----GGTV 723

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G G+R+    +RI+ R GKGIR  D +K      + AV  V+D D ++L S +G
Sbjct: 724 LTVTENGKGRRSDIDTYRITARGGKGIRNYDAAK----DKVAAVKIVDDVDDVLLSSQEG 779

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +IR+  NEI + SR   GV +    ++++V+ + R       DEA++ +
Sbjct: 780 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHD---DEAQTEQ 826



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 13/216 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V  V+  G +KR PL  Y   R+   G  G+ + + D +    + S H  ++  +  G 
Sbjct: 624 FVTMVTKQGLIKRTPLEQYANIRK--SGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQ 681

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +   +      P  R    +  + L +G+ +  +    E  +      V+  T++G  
Sbjct: 682 AIR---FNEADARPMGRSGHGVRAIRLAEGDEVVGVCICREGGT------VLTVTENGKG 732

Query: 658 RRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           RR+ +  +    R GK     D+ +D++ +V+     +D+LL+++ G  +R   + I   
Sbjct: 733 RRSDIDTYRITARGGKGIRNYDAAKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEI-PL 791

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
             R   GVR + L + D+V+ +A   H D    E+I
Sbjct: 792 QSRYGSGVRVMRLGENDKVMVLARTDHDDEAQTEQI 827


>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
 gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 859

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 371/902 (41%), Positives = 536/902 (59%), Gaps = 75/902 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + Y KCA
Sbjct: 14  IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERPYRKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 74  RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRYTESRL 133

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 134 QSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATNIPPHN 193

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I +P I+   LM II GPDFPTG  ILGR GI+  Y  GRGSI +RGV+
Sbjct: 194 LGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQILGRKGIRETYTGGRGSITMRGVA 253

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE    K   DR+ +++TE+PYQ NKA+++E+IAELV +K++  IAD+RDESDR G R+
Sbjct: 254 AIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDRDGMRI 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R A   V+LN LY+ T LQ+ FS   +AL   +P    L  +L+ F+ FR E + 
Sbjct: 314 VIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGEPVVLNLKRMLEVFLDFRIETIE 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKYLL KA +R H+L GL +A+ +LD ++++IR + +  TAR+               
Sbjct: 374 RRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQ--------------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L++D            LSE+Q  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 419 -GLVNDHG----------LSEIQADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+L II++EL  +K+  +TPRRT I++    +ED D I  E  VV ++  GY+KR
Sbjct: 468 LQRRERVLSIIEEELRQLKERHNTPRRTEILDLEGGLEDIDLIANERSVVLLTENGYLKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + +  RG +G++G   + E+ V      + H S+L FS  G VY    +R+PI S
Sbjct: 528 MPVSEFESTSRGTRGKAGTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIAS 587

Query: 611 PQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G  ++ +L + + E+IT+++    F ED      + +V  T  G ++R  LS F  
Sbjct: 588 RAAKGTPVVQLLPIPREEQITSLLAVSAFEED------VQLVMLTTGGFIKRTPLSAFSN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725
           I  +G IA+ L+  D +  V      + +L+ +  G  + F I+   +R   GR + GVR
Sbjct: 642 IRANGLIAINLEDADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDLRPL-GRTARGVR 700

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L  GD ++SM ++    A+  +RI      S       G++EE  S           
Sbjct: 701 AMALRDGDSLVSMDVL---PAELADRIAAAGEAS------DGESEEAASSDG-------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++L  +  G GKR     FR+  R+G G+R     +  +  ALV + 
Sbjct: 744 ------------PWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKFRRDGD--ALVGLC 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVD 904
            +   ++++LVS++G ++R+  + I   SRA  GV +    K +R+  V  +  E+E  D
Sbjct: 790 VMGAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEVVLVPPEAETDD 849

Query: 905 EA 906
           E+
Sbjct: 850 ES 851


>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
 gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
          Length = 891

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 361/892 (40%), Positives = 537/892 (60%), Gaps = 66/892 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+ + LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G +A+I+NP++D +ALM II GPDFPTG  ILGR+GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L +R     
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LSEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+ G+I++EL  ++D     RRT I++    ++D D I  E  VV ++  
Sbjct: 468 DYKDILGRRERVFGLIQEELTQLRDRYPIERRTEILDLAGGLDDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +GR+G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSD 664
           +P  S  A+G  ++ +L + + E IT+++      S++N +  ++  T+ G ++R +LS 
Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREELITSLLAV----SAFNDDTDLLMLTQGGYIKRTRLSA 643

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
           F  I  +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +R   GR + 
Sbjct: 644 FSNIRSNGLIAIGLEDGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPL-GRTAR 702

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR ++L +GD ++SM ++    AD   R+              G   E  +    ++ E
Sbjct: 703 GVRSMNLREGDALVSMDVLPVELAD---RVAQSSD--------DGGEAEADAEDGPTASE 751

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G               ++L  S  G GKR     FR+  R+G G+RA      +++  LV
Sbjct: 752 G--------------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDV--LV 795

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V
Sbjct: 796 GLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEV 847



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDL 580
           E   D ED         V+  S  G  KRVP++ +R Q+R G G   +  R D D +  L
Sbjct: 738 EAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDVLVGL 797

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFP 637
            ++     VL  S  G + +     +P    Q+R    + +  L++G+R++ ++   P P
Sbjct: 798 RVLGAGEEVLLVSEKGVIVRTSADAIP---QQSRAATGVRLQRLDKGDRLSEVVLVPPAP 854

Query: 638 EDE 640
           E++
Sbjct: 855 EED 857


>gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9]
          Length = 920

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 526/904 (58%), Gaps = 97/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + DEM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 50  VQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 109

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR+
Sbjct: 110 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 169

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 170 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNM 229

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+P+      LDAL+E I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 230 REVADGVHWALDHPEASREELLDALIERIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 289

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 290 AVVNTEEIKG-RMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSGRTGQRL 348

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + +V+ 
Sbjct: 349 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDVIA 408

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  +DEV+ +IR S   E AR  LM          DL
Sbjct: 409 RRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTGLM----------DL 458

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           + + D                VQ  AIL ++L RL  L R  I +E + L   I +  DI
Sbjct: 459 LGVDD----------------VQADAILAMQLRRLAALERQKILDEHDELMRRIADYADI 502

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +       RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 503 LAKPERQRKIVGDELDEIVARYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHAGFIKR 562

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +RD+D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 563 TKADEYRAQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPEGS 622

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P+ E +    Y+V AT+ G V++ +LS++    +
Sbjct: 623 RDSKGQHVANLLQFTPDESIQTVLSIPDYEVA---DYLVLATRSGKVKKTRLSEYDSPRQ 679

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C   +DI+L +KLG  ++F     ++   GR + G
Sbjct: 680 GGLIAVRLMQDESGETADELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPMGRQTAG 739

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+    GD++++M +                        I G+T              
Sbjct: 740 VQGMKFRAGDELLAMDV------------------------IWGET-------------- 761

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ +L V+ +GF KRT+  ++R+  R+G G++A  ++  +E G LV 
Sbjct: 762 -------------DKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLT--DERGTLVG 806

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V++ DQI+ +   G +IR  V+E+++  R T+GV +      + ++S+ R  E+E  
Sbjct: 807 AVVVSEEDQIMAIMKSGKVIRSNVSEVKLTGRTTQGVTLAKPDAGDEIISIARNAETE-- 864

Query: 904 DEAE 907
           DEA+
Sbjct: 865 DEAD 868


>gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
 gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
          Length = 816

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 362/878 (41%), Positives = 513/878 (58%), Gaps = 89/878 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+R+ G+VMG 
Sbjct: 1   MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYD L R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+   A  +L 
Sbjct: 61  YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDG   EP+VL +R+PN+LVNG GGIAVGMATNIP HNL EV  G   
Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180

Query: 205 VIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            +D+PD      L+AL+ I++GPDFPT  +I+GR GI++AY TGRGSI +R V ++E+  
Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIVGRNGIEDAYRTGRGSIRMRAVVNVEENK 240

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGAS 319
           G R Q+VVTE+PYQVN   + EKIAELVR+ +I  I+D+RDE S R G R+VI+LKR A 
Sbjct: 241 G-RTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDAV 299

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A V+LN LY++T LQ  F VNM+A+    P    L  I+  +V  + EV+VRRT+Y L K
Sbjct: 300 AKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQIISYYVEHQIEVIVRRTRYQLRK 359

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R                   
Sbjct: 360 ARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMER------------------- 400

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE+Q  AIL+++L RL  L R  I +E   L  ++ E   IL+S +R   
Sbjct: 401 -------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVSELEAILASPARQRE 453

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II QEL  V ++    RRTR+V    DM  ED I RED+VVTV+  GY KR    +YR+Q
Sbjct: 454 IIGQELAEVVEKYGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQ 513

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +  A+G+ + 
Sbjct: 514 KRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 573

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           NIL+ +Q ERI  +M   + E++    Y+V ATK G  ++  L+DF      G +A+ L 
Sbjct: 574 NILAFSQDERIAEVMAIQDYEAAP---YLVLATKRGLCKKTALTDFDSNRAGGLVAINLR 630

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISM 738
             DE++S       +D+LL ++  Q +RF     ++   GR + GV G+     D+++SM
Sbjct: 631 DDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDDSDELLSM 690

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V+                                   D++ +                
Sbjct: 691 DVVV----------------------------------PDTTAD---------------- 700

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L  +  G+ KRT   ++ +  R GKG+    +  ++  G LV    V  +DQ+  ++ 
Sbjct: 701 -LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVAPDDQLYAITS 757

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G ++R    ++R A R T GV +       +VV V R
Sbjct: 758 NGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVAR 795



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 23/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           + LD  DE++++    +  D+      GQ + RF +S I+  A  + + +R ++  +  +
Sbjct: 372 IALDHLDEVIALIRNAESADV----ARGQLMERFSLSEIQATAILD-MQLRRLAALERQR 426

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEE 788
           +I  A  L A     E I  +   + QR +I  +  E+     D         EG++S  
Sbjct: 427 IIDEAAELRAKVSELEAI--LASPARQREIIGQELAEVVEKYGDERRTRLVPFEGDMS-- 482

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++TV+  G+ KRT +  +R   R GKG++    + + E   +   F   
Sbjct: 483 -VEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQG---AALREDDIVEHFFVTT 538

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +  ++  ++KG + R   +E+   +R+ KG     I + ++DER+  V  I++ E
Sbjct: 539 THHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDYE 594


>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
 gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
          Length = 838

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 344/850 (40%), Positives = 525/850 (61%), Gaps = 44/850 (5%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I+ + +    G+ +  +  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M  
Sbjct: 4   KEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYD 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  NK + K AR  G+V+GKYHPHG++A+YDA+ R+AQD+++R+ L++G GNFGS+DG
Sbjct: 64  SGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGSIDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K A  LL DLGK+TVD+ PNYD S QEP VL AR+PN+LVNG  GI
Sbjct: 124 DSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGSNGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGE +D    ++DNPD+  + LME++ GPDFPTG VI GR GI +AY 
Sbjct: 184 AVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVIRGREGIISAYE 243

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ I+    I++    +  I++TEIPYQVN++ +++KI ELVR+K++ +I+++ D 
Sbjct: 244 TGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNVHDG 303

Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR     ++IELK+ A   V+LN+L+++T LQ  + V M+AL    P   +L  IL  +
Sbjct: 304 ADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVDGVPRTLSLREILHYY 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  +E+V+ RRT++ L KA  RAH++ GL IA+ ++DEV+ IIR S   + A  +L +R 
Sbjct: 364 ILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLSER- 422

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AIL+++L RLTGL R+ ++ EL  L 
Sbjct: 423 -------------------------FGLSEAQCTAILQMQLRRLTGLEREKLQEELAELK 457

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I     IL+    +  +IK+EL  +K   +TPRRTRI     D++ ED I  E+MVVT
Sbjct: 458 EKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDVEDLIADEEMVVT 517

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +++ GY+KR+P++ YR Q+RGGKG  GV +++ DFV  LFI STH  +LFFSS G VY++
Sbjct: 518 MTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRK 577

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
           KV+ +P     ARG A++N+L L++GE I   +    FPEDE      +++F TK G V+
Sbjct: 578 KVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATKEFPEDE------FLMFGTKEGMVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  +S + +  + G IA+ L   DE+++V+       + + +  G+ + +  S +R   G
Sbjct: 632 KTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAM-G 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLK 776
           R+++GVRG+++  G  V+ + I       +   ER  Y K    +   +     +     
Sbjct: 691 RDTMGVRGMTVPDGVHVLGLEIASPGKEIFVITER-GYGKRTPVEEYPLHHRGGQGVFTI 749

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             ++ +G ++     ++   E  ++ +SE+G   RTS  D     R+ +G++  +V   +
Sbjct: 750 TMTAKKGQLA---AMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKD 806

Query: 837 EIGALVAVFP 846
            + A VA+ P
Sbjct: 807 RVSA-VAIAP 815


>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 361/878 (41%), Positives = 521/878 (59%), Gaps = 86/878 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV     Y K AR
Sbjct: 8   TVVPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL+
Sbjct: 68  IVGDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLE 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  ++ +L ++TV+F PNYD S QEP VL AR P +L+NG  GIAVGMATNIP HN+ 
Sbjct: 128 ALSEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNIT 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++D  +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A  TGRGSIV+RGV+ I
Sbjct: 188 EIIDALLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVADI 247

Query: 257 EK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E+ T  DR  I++ EIPYQVNKA ++E+IAELVRE  +  IAD+RDESDR G RVVI+LK
Sbjct: 248 EESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+  V+LN+LY  T LQ+ F  N VAL   +P   +L   L  F++FR++VV RRT +
Sbjct: 308 RDANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALAHFLSFRQDVVTRRTLF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KARDR H+L GL  A+  +D+++ +IR S +P+ AR  L+++               
Sbjct: 368 RLRKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE+Q RAIL++RL RLT L RD I  E   + + I    +IL SRS
Sbjct: 413 -----------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRVLILGLEEILGSRS 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL+ +I++E +++++     R+TRIV    ++  E  I  +   +T+++ GY+KRV    
Sbjct: 462 RLMAVIREEFMALRENYGDARKTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDA 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  QRRGGKGRSGV ++++D V      + H ++LFF+ +G VY+ K   +P     ARG
Sbjct: 522 YPTQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K +   L L   E++T ++     E   +   +VF T +G ++R  LS +  I +SG IA
Sbjct: 582 KPIRGFLPLAPEEKVTRMLNVASFEGERS---LVFVTVNGIIKRTALSAYSSIRQSGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D +  V     ++ +L+ T+ G  + FPI  +    GR + GVR I L + D+V
Sbjct: 639 LTLREGDRLAQVLVAEADSHVLVATRRGMAILFPIHEV-TEQGRTASGVRAIRLREEDRV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
               IV   D                                                  
Sbjct: 698 ADAEIVTETDP------------------------------------------------- 708

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +  V+EKG+GKR     FR  +R G G++ +  ++  +IGA+V++    + D + +
Sbjct: 709 ----VAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAE--KIGAVVSLVKAGNTDDLTI 762

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++ KG   RV  NE+R   R+ +GV++   A D+ +VS
Sbjct: 763 ITSKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVS 800


>gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
 gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
          Length = 882

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 349/901 (38%), Positives = 531/901 (58%), Gaps = 93/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCA
Sbjct: 18  IQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNTPDKPHRKCA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ WS+R +L++G GNFGS+DGD  AA RYTE RL
Sbjct: 78  RIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSIDGDGAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  ++ D+ KDTVDF PN+D + +EPVVL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 138 SKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTTGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+  CV +IDN        D+  ++ I++GPDFPTG +ILGR GI+ AY TGRG I +
Sbjct: 198 REVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIILGRAGIEEAYRTGRGKIKV 257

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE     + +I+V+EIPY VNKA M+EKIA++V++KR+  I  LRDE+ R+G RV
Sbjct: 258 RAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDGITALRDETSREGMRV 317

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++  + +V+LN+LY+ T LQ  + V M+AL G +P   +L  +L  ++  +E+VV 
Sbjct: 318 VIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALVGNQPRIMSLKEVLDHYILHQEDVVT 377

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA++R H+L GL  A+ N+DEV++IIR S +   A+ +LM            
Sbjct: 378 RRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKEQLM------------ 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   LSE Q +AI+++RL  LTGL R+ +  E   L  +I     I
Sbjct: 426 --------------GRFALSEAQAQAIVDMRLRALTGLEREKLEAEHRELMEKIAYFKGI 471

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LL ++K+E+  + D+    RRT+I     D+  ED I     ++T +  GY+KR
Sbjct: 472 LADHKKLLTVVKEEMQEIADKYGDDRRTQIGFDDDDISAEDLIPVTHPIITFTKFGYIKR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGGKG  G+    +D++ +L    +H  + FF++ G VY+ K + +P  S
Sbjct: 532 MSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNKGRVYRLKAYEIPEAS 591

Query: 611 PQARGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ARG A++N+L L   E IT+++P    EDE      Y+  AT+ G V++ +L ++  I
Sbjct: 592 RTARGTAIVNLLQLMPDETITSMIPVVPGEDEDK----YLFMATQRGIVKKTRLREYENI 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A+ L   D ++ V+     ++++L T+ GQCVRF  S +R   GR+++GV GI+
Sbjct: 648 RKSGLAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVR-GTGRSTMGVIGIN 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D VI+M +    ++                                          
Sbjct: 707 LSDQDCVIAMQLASQGES------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++ VS++G GK T + +F   +R GKG++   +++  + G LV V  V+
Sbjct: 725 -----------LVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITE--KTGDLVGVKSVD 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++Q++L++  GT+IR+ + +  +  R T GV +     D+ V S+  ++  ++  E E 
Sbjct: 772 KDNQLMLINRAGTIIRINIADTALLGRITSGVKLIDLKGDDEVASISVVQREDLPLEDED 831

Query: 909 T 909
           T
Sbjct: 832 T 832


>gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX]
 gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX]
          Length = 848

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 362/900 (40%), Positives = 519/900 (57%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M   G   ++ Y KCA
Sbjct: 18  IEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLYAMYDSGYRPDRGYFKCA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIY+ L R+AQ W++R+ L++G GNFGS   DP AA RYTEC+L
Sbjct: 78  RVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFGSPGNDPAAAMRYTECKL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDFRPNYDG  QEPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 138 APLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +D+PD      LDAL+E I+GPDFPT   I+GR GI+  Y TGRGSI +R
Sbjct: 198 REVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIVGRRGIEETYRTGRGSITMR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  IE+    R+ +VVTE+PYQVN   +  KIAELV+E +I  IAD++DES  R G R+
Sbjct: 258 AVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKISGIADVKDESSGRTGQRL 317

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P    L  +++ +VA + EV+V
Sbjct: 318 VIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQMIRHWVAHQIEVIV 377

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +RAH+L  L  A+  +DEV+ +IR S + + A+  LM+           
Sbjct: 378 RRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDAKNGLME----------- 426

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + +VQ RAIL+++L +L  L R  + +E + L  +I +  +I
Sbjct: 427 ---------------LLAIDDVQARAILDMQLRKLAALERQQLTSEYDELMAQIADYNEI 471

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  R   II+ EL  + ++    RRT IV    DM  ED I  ED+VVT++  GY KR
Sbjct: 472 LESPERQRRIIRDELAEIVEKYGDDRRTEIVPYEGDMRMEDFIAEEDIVVTITRGGYAKR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  YRAQ+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP  +
Sbjct: 532 TRLDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFTNKGRVYRTKAYELPELA 591

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG  + N++     E I  ++   + +++    Y+V AT+ G V++ KL++F     
Sbjct: 592 RDSRGHHVANLVPFLPDEEIAQVLALRDYDAA---PYLVLATRSGLVKKTKLAEFDSARS 648

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           SG IA+ L   DE+++       +D+LL +   Q +RFP S  ++R   GR + GV G+ 
Sbjct: 649 SGIIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDDSLRPM-GRATSGVIGMR 707

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            A+GD ++SM ++   +   D                                       
Sbjct: 708 FAEGDYLLSMDVIREGEGATD--------------------------------------- 728

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L  +E G+ KRT +  + +  R GKG+    +  +   G LV    V+
Sbjct: 729 -----------VLVATEGGYAKRTPADQYPVQKRGGKGVLTARI--VESRGKLVGALMVD 775

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             D+I+ ++  G +IR    EI+ + RAT GV +   +K   VV++ R  E  + D+AE+
Sbjct: 776 PEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKGNHVVAIARNTEG-MGDDAEN 834


>gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum]
          Length = 854

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 373/869 (42%), Positives = 514/869 (59%), Gaps = 86/869 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+VSI +E++ +YL Y+++VI+GRA+PD RDGLKPV RR+LF M +MGV     Y K AR
Sbjct: 13  TTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKSAR 72

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL 
Sbjct: 73  IVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLT 132

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  ++ +L ++TVD+ PNYD S +EP VL A  P +L+NG  GIAVGMATNIP HN+ 
Sbjct: 133 RLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPHNIT 192

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++  + ++DNP+     LM  + GPDFPTG VILGR+GI++AY TGRGSIV+RGV  +
Sbjct: 193 EVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYRTGRGSIVMRGVVEV 252

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E  T  DR+ +V+ EIPY VNKA ++EKIAELVREK+I  IAD+RDESDR G R+V+ELK
Sbjct: 253 EDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIVVELK 312

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   +I+NQL+  T LQS F  N V++   +PE  +L   L+ F+ FR++VV RRT +
Sbjct: 313 REAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVFLGFRKDVVTRRTLF 372

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+R H+L GL  A+  +DE++ +IR S +PE AR  L+                 
Sbjct: 373 RLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVS---------------- 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE+Q +AIL+LRL RLTGL R+ I  E   +   I     IL+SR 
Sbjct: 417 ----------TFAFSELQAQAILDLRLQRLTGLEREKIEAEYREVAALIASLEAILASRE 466

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LL +I+QE   + +     RRT IV    ++  E  I  E  +VT+S+ GY+KR+P +V
Sbjct: 467 ALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVTLSYEGYIKRMPDAV 526

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
              QRRGGKGR GV ++++D +        H ++LFF+ LG VY+ K + LP     ARG
Sbjct: 527 LPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARG 586

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K L+++LSL+  ER+  I+P    E   +NL ++F T  G  ++ +LS++  I + G IA
Sbjct: 587 KHLLSLLSLSPDERVAAILPVRSFEG--DNL-LLFGTVKGYFKKTRLSEYANIRQGGLIA 643

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
             L+  D +  V     +  +L+ T+ G  +RF    IR   GR + GVR I L+  D V
Sbjct: 644 TVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRP-TGRATRGVRAIRLSPDDSV 702

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S   V  +D                                                  
Sbjct: 703 VSFEEVSDSD-------------------------------------------------- 712

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L  +EKGFGKR  +  FR+  R GKG+R   V+   E GA+VA+  V + D I +
Sbjct: 713 ---LLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTP--ETGAVVAILKVTERDDIDV 767

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           V+D G +IR+P  EIR   R  KGV + S
Sbjct: 768 VTDTGRVIRIPSEEIRKVGRGAKGVKLVS 796



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 7/108 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +  +L  + KG+ K+T   ++  +N    G+ AT + + + +  ++ + P    D+ +LV
Sbjct: 613 DNLLLFGTVKGYFKKTRLSEY--ANIRQGGLIATVLEEGDRLARVLVLHP----DRRLLV 666

Query: 857 SDKGTL-IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + +G + IR   + IR   RAT+GV     + D+ VVS E + +S+++
Sbjct: 667 ATRGGMSIRFEADNIRPTGRATRGVRAIRLSPDDSVVSFEEVSDSDLL 714


>gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
          Length = 813

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 348/892 (39%), Positives = 526/892 (58%), Gaps = 83/892 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M  +   +N+ Y K AR+ 
Sbjct: 5   IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQD+S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TVDFRPNYD S +EP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG + ++D P   +  ++ +++GPDFPTGA I G  G+  AY TGRG+I IRG + +E+
Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGKGLTEAYTTGRGTIKIRGRAEVEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D   +V+ EIPY +NK++++EKIA L+ + RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 245 RKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKGV 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L++ F +NM+ +   +P    +  +L+ F+  R +V++RRT++ L 
Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIKQVLEHFLTHRRDVILRRTRFDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMER------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL +   L 
Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLR 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  ++D   TPR+T I+E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 459 GVIRDEIKEIQDRYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 519 QKRGGKGIAGVATAGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +   E        Y +F T+ G V+R     +     +G IA+ L
Sbjct: 579 ANLLPMDKEEFVATALSIREFSEER---YFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGL 635

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+    E ++LL T+ G   RF IS +R   GR + GV+GI+L KG+  ++ 
Sbjct: 636 KENDELLTVKEIDDETEVLLATQQGLSNRFHISGVRP-TGRGAAGVKGIAL-KGNDRVAA 693

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V                              ITS+                       
Sbjct: 694 GVV------------------------------ITSVSRSE------------------- 704

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LTVS  G+GKRTS   + I NR G G+    V+   + G ++    V D+D+++L++ 
Sbjct: 705 -VLTVSANGYGKRTSIEHYPIRNRGGSGVINMRVTP--KTGQVIGAVMVGDDDELLLLTS 761

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              +IR+ V+ I    RAT+GV++    +++ V+  + +  S++   A S E
Sbjct: 762 ANKIIRLSVSGISSVGRATQGVMLVRMDENDTVMGFDLVDPSDLDRCAPSGE 813


>gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 731

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/734 (43%), Positives = 473/734 (64%), Gaps = 32/734 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIV 741
                D+VI M  +
Sbjct: 695 DNDGQDEVIGMICI 708



 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 742 LHADADYDE---RICYMKHMSAQ----RRLISGDTEEITSLKND---SSVEGNISEERCQ 791
           LHA+  Y+E   +I Y++ + A     R+++  +  E+ +   D   S +  +  E   +
Sbjct: 437 LHAE--YEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPE 494

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +    +Q I+T+S  G+ KRT   +FR  NR G G + T+    + +     ++P   ++
Sbjct: 495 DFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDADFVE---HIYPATMHN 551

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIR 898
            ++  + KG    + V EI   ++ +KG  I    +   D+ V +  R++
Sbjct: 552 TMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYLRVK 601


>gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
 gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
          Length = 985

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 363/918 (39%), Positives = 536/918 (58%), Gaps = 80/918 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHNM 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+ C+A  DN +I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG  H
Sbjct: 186 TEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245

Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I+L
Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT 
Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R H+L GL +A+AN+D+++  I+ S NP  AR  L+   W A  +  +++  
Sbjct: 366 YELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLERA 425

Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                       +D S   G D  +Y LS  Q  AILELRL RLTGL +D +  E + + 
Sbjct: 426 GSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSEIL 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+  + L+ +IK+EL+ V  +    RRT IVE  +D   ED I  E +V+T
Sbjct: 486 GQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVVLT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  GY K  PLS Y AQRRGG+G+S   M+++DF+  L + S H +VL F+++G VY+ 
Sbjct: 546 VSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVYRL 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVFATKH 654
           +V+ +P  S  +RG+ +IN+L L+  E IT I+P       F E  +++ N       K 
Sbjct: 606 RVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKTNTVK- 664

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ-CVRFPISAI 713
             ++ N +           +AM  D+ DE LS E         L T+L Q CV   ++ +
Sbjct: 665 --LQDNPVISVHLPELETALAMLDDNADE-LSAE---------LRTQLKQLCVELAVTDL 712

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                              D  I +     A++       +M   S   + +  + E+ +
Sbjct: 713 -------------------DDEIIIEFAQQAESVRKNYYVFMATASGTVKRV--ELEQFS 751

Query: 774 SLKNDSSVEGNISEERCQ---ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +++++      ++EE       +   EQ I+  S +G   R +  D R   RS KG+R  
Sbjct: 752 NVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKAIRFAETDVRAMGRSAKGVRGM 811

Query: 831 DVS---------------------KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            V+                       N +  +V++  V +  +++  S  G   R PV++
Sbjct: 812 RVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDD 871

Query: 870 IRIASRATKGVVIFSTAK 887
                R  KGV+   T++
Sbjct: 872 FPTKKRGGKGVIAIKTSE 889



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           ES   N YV  AT  G V+R +L  F  +  +G  A++L+  D ++ V     E  I+L 
Sbjct: 725 ESVRKNYYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLF 784

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G+ +RF  + +R   GR++ GVRG+ +A   Q         A+   D         S
Sbjct: 785 SNEGKAIRFAETDVRAM-GRSAKGVRGMRVALAAQ---------AEDTEDTDTDSEDEDS 834

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   ++S     I SL     V     E  C             S  G+GKRT   DF  
Sbjct: 835 SDSNVVS----RIVSL----VVVPETGEVLC------------ASANGYGKRTPVDDFPT 874

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG+ A   S+ N  G LV    +++  +++L+SD GTL+R    E+    R  +G
Sbjct: 875 KKRGGKGVIAIKTSERN--GELVGAVAIDETKELMLISDGGTLVRTRAAEVAQTGRNAQG 932

Query: 880 VVIFSTAKDERVVSV 894
           V +    + E +V V
Sbjct: 933 VRLIRLGEGETLVGV 947


>gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1]
 gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1]
          Length = 826

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 351/888 (39%), Positives = 536/888 (60%), Gaps = 87/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 24  VKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 84  RIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEARM 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LL D+ KDTVDF  NYD + +EP VL +R PN+L+NG  GIAVGMAT+IP H L
Sbjct: 144 ATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHRL 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++  + V++NP   L  +++++ GPDFPTG +I G+ GI  AY++GRG I +R  + 
Sbjct: 204 DEIIEALIFVLENPQASLSDILDLVPGPDFPTGGIIHGKQGILEAYSSGRGRIRVRAKTR 263

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+  G RE I++ E+PYQ NKA ++E+I+EL R+K +  I+++RDESDR+G RVVI+LK
Sbjct: 264 LERIEG-RESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVIDLK 322

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A ++LNQLY+ + ++S FS+ ++A++  +P  F L+ +LK F+  R+ +V+RRT Y
Sbjct: 323 REANAQIVLNQLYKSSGMESTFSIILLAIHNKEPRIFNLLELLKLFLMHRKTIVIRRTIY 382

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H+L GL +A+ N + V+ +I+ S +  +A+  L+Q                
Sbjct: 383 ELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQ---------------- 426

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+ Q++AILE+RL RLTGL ++ I  E   L   I+E   IL    
Sbjct: 427 ----------AHQLSQEQSKAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHAD 476

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +IK+ELL +K++  T R+T+I E    + DED I REDMVVT+SH GY KR+PL +
Sbjct: 477 KLNHLIKEELLEIKEKFSTARKTQIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLKI 536

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+      ++DF+   F  +TH  +LF +  G +Y  KV+++P     A G
Sbjct: 537 YEQQKRGGKGKISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAIG 596

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KAL+N++ +  GE+I  I+  P+      + ++VF TK G ++R +LS F ++ R G  +
Sbjct: 597 KALVNLIDIEPGEKICAILSTPDFSP---DKFLVFFTKKGMIKRTQLSAFGRV-RIGVRS 652

Query: 676 MKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           ++L   D +++ +    EN ++ + T  G C+RF  S +R   GR ++GV G+ L +GD 
Sbjct: 653 IELKEGDALVTAQILEHENQELFMATAKGMCIRFKASGVRDM-GRTAMGVIGMRLKEGDF 711

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI  +I L                S Q +L                              
Sbjct: 712 VIGASIAL----------------SDQHKL------------------------------ 725

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 LT+S KG GK+T    +R+ NR G G+    ++   + G LVA+  V++   ++
Sbjct: 726 ------LTISSKGMGKQTLIGAYRLQNRGGLGVIGAKLTP--KTGNLVAIVHVDEGQDLM 777

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           L++  G +IR+P+  IR   R   GV + S   D  V +    +E+E+
Sbjct: 778 LLTKNGKMIRMPMESIRETGRHASGVKLVSVEGDGVVYANTCPKENEV 825


>gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 870

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 361/884 (40%), Positives = 513/884 (58%), Gaps = 90/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M   G   ++ Y KCA
Sbjct: 27  IEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAMYDGGYRPDRGYFKCA 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIYD L R+AQ WS+R+ L++  GNFGS   DP AA RYTEC+L
Sbjct: 87  RVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSAGNDPAAAMRYTECKL 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ KDTVDFRPNYDG   EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 147 APLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 206

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +DNP+      LDAL+  ++GPDFPT  +I+G+ GI+ AY TGRGSI +R
Sbjct: 207 REVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKRGIEEAYRTGRGSITMR 266

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R+ +VVTE+PYQVN   +  KIA+LV++ +I  IAD+RDES  R G R+
Sbjct: 267 AVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITGIADVRDESSGRTGQRL 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P    L  +++ +V  + EV+V
Sbjct: 327 VIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQMIRHWVKHQVEVIV 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +RAH+L  L  A+  +DEV+ +IR S + + AR  LM          DL
Sbjct: 387 RRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQARTGLM----------DL 436

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++ IDD               +Q RAIL+++L +L  L R+ +  E + L  +I +  DI
Sbjct: 437 LE-IDD---------------IQARAILDMQLRKLAALERNALTAEYDELMAQIADYNDI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S +R   II++EL  + ++    RRT I+    DM  ED I  ED+VVT+S  GY KR
Sbjct: 481 LESDTRQRSIIREELGEIVEKYGDERRTHIIPFEGDMRMEDFIAEEDVVVTISRGGYAKR 540

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YRAQ+RGGKG  G  ++ +D V   F+ +TH  +L F++ G VY+ K + LP  +
Sbjct: 541 TRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGRVYRTKAYELPEAA 600

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L    GE I  IM   + E++    Y+V AT+ G V++++L DF     
Sbjct: 601 RDARGQHVANLLPFQPGEEIAQIMALRDYEAA---PYLVLATREGLVKKSRLEDFDSARA 657

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L   DE+++      ++D+LL +   Q +RFP S  ++R   GR + GV G+ 
Sbjct: 658 AGIIAINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLRPM-GRATSGVIGMR 716

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D ++SM ++   D   D                                       
Sbjct: 717 FLEDDYLLSMDVIRPGDGSTD--------------------------------------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L  +E G+ KRT S  + + NR GKG+    V  +   G LV    ++
Sbjct: 738 -----------VLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKV--VEARGKLVGALMID 784

Query: 849 DN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              D++  ++  G +IR   +E++ + R T GV + + AK  ++
Sbjct: 785 PEVDEVFAITSAGGVIRTGADEVKRSGRTTMGVRLMNLAKGNKI 828



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 28/231 (12%)

Query: 685 LSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           + +E    E D+++T ++ G   R  I   R    R   GVRG  L + D V    +   
Sbjct: 517 MRMEDFIAEEDVVVTISRGGYAKRTRIDNYRA-QKRGGKGVRGAQLKQDDIVQHFFVT-- 573

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE--GNI-----SEERCQELKLK 796
               ++  +C+    + Q R+      E+     D+  +   N+      EE  Q + L+
Sbjct: 574 --TTHNWILCF----TNQGRVYRTKAYELPEAARDARGQHVANLLPFQPGEEIAQIMALR 627

Query: 797 E----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +     +++  + +G  K++   DF   +    GI A ++ + +E+ A   VFP   +D 
Sbjct: 628 DYEAAPYLVLATREGLVKKSRLEDF--DSARAAGIIAINLREGDELIAARLVFP---DDD 682

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++L+S     IR P ++  +R   RAT GV+     +D+ ++S++ IR  +
Sbjct: 683 LLLISSDAQAIRFPASDESLRPMGRATSGVIGMRFLEDDYLLSMDVIRPGD 733


>gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 711

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 337/702 (48%), Positives = 481/702 (68%), Gaps = 7/702 (0%)

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           ++NP++  D L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G +HIE    DR+ 
Sbjct: 6   VNNPEVTFDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQA 65

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI+LKR A A  ILN
Sbjct: 66  IVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLKRNAEASFILN 125

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           Q+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RRT++ L K R++AH
Sbjct: 126 QILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRRTEFRLRKTREKAH 185

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD-IKDLIDLIDDSSYTIGSD 444
           + +GL IAV ++DEV++IIR + +P  A REL+ + W  S+ I  +I+LI DS+  +  D
Sbjct: 186 IYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFL-KD 244

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L S  +L+  IK  
Sbjct: 245 GVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNN 304

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L   K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV LS YR QRRGGK
Sbjct: 305 LQETKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGK 364

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G+ G  +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+  P ARG+AL+NI  L
Sbjct: 365 GKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPL 424

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
           + GE IT IMP P +     N  +VFAT +GN+RRN L+DF  I  +GKIA+KLD  D++
Sbjct: 425 SDGETITNIMPLPSENDENQN--IVFATAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKL 482

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K D VISM I+   
Sbjct: 483 VSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKNDSVISMTILNGI 542

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               + +  Y+K +   +RL +     I S    +  +  I  E   +L + E+FILT++
Sbjct: 543 GVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 601

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E GFGKRTS+Y++R++NR G GI  T++   +  G +VA FPV   D I+L++DKG LIR
Sbjct: 602 ENGFGKRTSAYEYRVTNRGGVGI--TNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIR 659

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 660 ISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 701


>gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 360/909 (39%), Positives = 522/909 (57%), Gaps = 97/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KCA
Sbjct: 40  IQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCA 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          DL
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM----------DL 448

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E N L   I +  DI
Sbjct: 449 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F  +  ++   GR + G
Sbjct: 670 GGLIAVRLMTGENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+   +GD++++M +V   D+D D                                  
Sbjct: 730 VQGMKFREGDELLAMDVVW-GDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES--E 901
              V ++DQI+ +   G +IR  V+E++   R T+GV      K++ ++S+ R  E   E
Sbjct: 797 AVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKDDE 856

Query: 902 IVDEAESTE 910
             +  ES E
Sbjct: 857 SAESGESVE 865


>gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
 gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
          Length = 825

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/734 (44%), Positives = 486/734 (66%), Gaps = 31/734 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV  +
Sbjct: 3   NQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ K+T+D++ NYD +  EP+VL AR P++LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+ G   ++ NPD     LM++I GPDFPTG VI+GR+GI +AY +G+G++
Sbjct: 183 NIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGNV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  ++IE+    RE+I+VTEIP+ VNKA +++KIAEL R+K I  I  +RDESDR G 
Sbjct: 243 VVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E+V
Sbjct: 303 RITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQEDV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ L+KA  RAH+L GL IA+ ++DE+V IIR S + + A+  L+ R        
Sbjct: 363 VRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L ++I +  
Sbjct: 415 ------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H GY
Sbjct: 457 DILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S +R Q RGG+G  G+ ++D+DF+  L   STH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L L++GE+I  ++  PE     N   + F TK G V+R  + +F  
Sbjct: 577 EYSRIAKGLPIINLLQLDKGEKIQAMINVPEGHEEGN---LFFITKMGVVKRTSVEEFSN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  SG IA+ L   DE+ +V T   + +I++ T LG    F  S +RV  GR++ GVRGI
Sbjct: 634 IRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHLGYAASFKESDVRVM-GRSAAGVRGI 692

Query: 728 SLAKGDQVISMAIV 741
           +L + D VI   ++
Sbjct: 693 NLRENDYVIGSEVL 706


>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
 gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
          Length = 823

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 360/878 (41%), Positives = 521/878 (59%), Gaps = 89/878 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +IT+EM+++YL YA++VI+ RA+PD RDGLKPV  RIL+GM  MG+  N+ + KCARI G
Sbjct: 10  NITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVG 69

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E++GK HPHG++A+YDAL R+AQ W++R  L+EGQGNFGSVDGDPPAA RYTE RL   A
Sbjct: 70  EILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARLTPIA 129

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG  GIAVGMATNIP HNL EV 
Sbjct: 130 EEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLSEVC 189

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D    +IDNPD  ++ L++I+ GPDFPT  +ILG  GI NAY+TGRG I+IR  +HIE+ 
Sbjct: 190 DAITHLIDNPDATVEDLVKILPGPDFPTAGMILGTEGIMNAYSTGRGHIIIRAKAHIEEA 249

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           +     IVVTE+PYQVNKA + E+IAEL R+++I  I D+RDESDR G R+VI LK+ A 
Sbjct: 250 ARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDAQ 309

Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +LN LY++T +Q+ F VNM+AL   G +P   TL  +L+ ++  R EV+ RRT++ L
Sbjct: 310 PKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRTEFDL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           +KAR RAH+L GL IA+ +LD V+  IR S + + AR  LM                   
Sbjct: 370 DKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLMN------------------ 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE Q  AILE++L RL  L R  I  E   +   I E  DIL++  ++
Sbjct: 412 --------GFALSEAQANAILEMQLGRLAALERQRIEEEYREVIRLIGELEDILANPRKI 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L +IKQ+L  +K +    RRTRI+ E   ++ D+D I    +++T++  GYVKR    VY
Sbjct: 464 LHLIKQDLADLKAKYGDARRTRIIPEANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGG+G  G   R++D V  +   +T   +LFF+  G VY+ K   LP  S  A+G 
Sbjct: 524 RTQRRGGRGIRGATTREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRTAKGL 583

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L+N+++L  GE++T+++  P+ E +    Y++ AT  G ++R  + ++ Q+  +G IA+
Sbjct: 584 PLVNLIALEPGEQVTSVLAVPDFEKAE---YLIMATVRGKIKRTSIREYSQVRSNGLIAI 640

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  DE+  V       D+LLTT  GQ +RF    +R   GR + GV GI+LA+GD+V+
Sbjct: 641 GLEEGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEGDRVV 699

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM                                                     +L  +
Sbjct: 700 SM-----------------------------------------------------DLAQE 706

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L V+  G+GKRT   ++ +  R+  G+    +   +E+        V +N  + ++
Sbjct: 707 NAALLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDEVA---VAHVVRENSLLTII 763

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ G ++R   + I +  R T+GV I +   ++RV ++
Sbjct: 764 TESGMVMRTEASGISMFGRNTQGVTIVNLTSNDRVAAL 801


>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
 gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
          Length = 883

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 361/910 (39%), Positives = 547/910 (60%), Gaps = 57/910 (6%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D   +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 5   TDPNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTS 64

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+++RL L++G GNFGSVDGDPPAA
Sbjct: 65  DRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSVDGDPPAA 124

Query: 128 ERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RLQ      LL+D+  +TVDF  N+DGS QEP V+ AR P +L+NG  GIAVGM
Sbjct: 125 MRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGSTGIAVGM 184

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E++DG +A+I +PD++   LM II GPDFPTG  ILGR GI+  Y TGRG
Sbjct: 185 ATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQILGRRGIRETYTTGRG 244

Query: 247 SIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           S+ +RGV+ +E    K   DR+ I++TE+P+Q NKA+++E+IAELV +K++  I+D+RDE
Sbjct: 245 SVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDGISDIRDE 304

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIEL+R A   V+LN L++ T LQ+ FS  M+AL   +P   TL  +L+ F+
Sbjct: 305 SDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLRKMLEVFL 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E + RRT++LL KA +R H+L+GL IA+ +LD ++ +IR + +  +AR EL+ +  
Sbjct: 365 EFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARSELVAQ-- 422

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E+Q  AIL+++L RLT L  D IR E   L  
Sbjct: 423 ------------------------FGLTEIQADAILQMQLRRLTALEADKIRLEHEDLLA 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL+ R R+ GII  EL ++++   +PRRT I++    +ED D I  E  VV +
Sbjct: 459 KITDYKDILARRERVFGIITDELGAIRNRYLSPRRTEILDLEGGLEDIDLIANERSVVLL 518

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G VY   
Sbjct: 519 TETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDRGVVYAVP 578

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +R+PI S  A+G  ++ +L + + E+IT+++      +      +V  T  G ++R +L
Sbjct: 579 AYRVPICSRAAKGTPIVQLLPIPREEQITSLLAV---SAFSEEAMLVMLTSGGYIKRTRL 635

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720
           S F  I  +G IA+ L+  D++  V      + +L+ +  G  + F ++   +R   GR 
Sbjct: 636 SAFSNIRSNGLIAISLEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEELRPL-GRT 694

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVR ++L  GDQ++SM ++    A+  +R+      +    L   + EE+ +      
Sbjct: 695 ARGVRAMNLRAGDQLVSMDVL---SAELADRVASSSDSAG---LEESEPEELVA------ 742

Query: 781 VEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                 E   +E+ + E  ++L  S  G GKR     FR+  R+G G+RA    +  +  
Sbjct: 743 -----DEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKFRRDGD-- 795

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV +  +   ++++LVS++G ++R   + I   SRA  GV +      +R+V V  +  
Sbjct: 796 TLVGLKVLGAGEEVLLVSERGVIVRTEADAIPQQSRAATGVRLQRLDAGDRLVEVVLVPP 855

Query: 900 SEIVDEAEST 909
           +   DE ++ 
Sbjct: 856 AASEDELDAA 865


>gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 825

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/734 (44%), Positives = 486/734 (66%), Gaps = 31/734 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV  +
Sbjct: 3   NQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA 
Sbjct: 63  KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ K+T+D++ NYD +  EP+VL AR P++LVNG  GIAVGM T
Sbjct: 123 RYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+ G   ++ NPD     LM++I GPDFPTG VI+GR+GI +AY +G+G++
Sbjct: 183 NIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGNV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  ++IE+    RE+I+VTEIP+ VNKA +++KIAEL R+K I  I  +RDESDR G 
Sbjct: 243 VVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E+V
Sbjct: 303 RITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQEDV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ L+KA  RAH+L GL IA+ ++DE+V IIR S + + A+  L+ R        
Sbjct: 363 VRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L + Q +AIL++RL RLTGL RD +  E   L ++I +  
Sbjct: 415 ------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H GY
Sbjct: 457 DILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S +R Q RGG+G  G+ ++D+DF+  L   STH  +LFF++ G VY +K + +P
Sbjct: 517 IKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L L++GE+I  ++  PE     N   + F TK G V+R  + +F  
Sbjct: 577 EYSRTAKGLPIINLLQLDKGEKIQAMINVPEGHEDGN---LFFITKMGVVKRTSVEEFSN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  SG IA+ L   DE+ +V T   + +I++ T +G    F  S +RV  GR++ GVRGI
Sbjct: 634 IRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHMGYAASFKESDVRVM-GRSAAGVRGI 692

Query: 728 SLAKGDQVISMAIV 741
           +L + D V+   ++
Sbjct: 693 NLRENDYVVGSEVL 706


>gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
 gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
          Length = 920

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 349/901 (38%), Positives = 536/901 (59%), Gaps = 87/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EEE   +  ++++ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +N 
Sbjct: 70  EEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNA 129

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K AR+ G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGS+DGD  AA R
Sbjct: 130 QYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMR 189

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +++ L KDTVDF PNYDGS +EP VL +R PN+L++G  GIAVGMAT 
Sbjct: 190 YTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATT 249

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  VA+  N +I ++ LM+ I+GPDFPTGA ILG +GI  AY TGRG+IV
Sbjct: 250 IPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGTSGIITAYETGRGAIV 309

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  SHIE     + +I++TEIPY+V K A++EKIA L +EKRI  I+++RDE+ R+G R
Sbjct: 310 LRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIR 369

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+LK+    +VILN++ + T+LQ  ++ NM+AL   +P+   L   L  ++  + +VV
Sbjct: 370 VVIDLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVKGEPKLLNLKQALDVYLKHQIDVV 429

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L +A+DRAH+L GL IAV+N+DEV+R+IR S N   A+ +LM           
Sbjct: 430 TRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLM----------- 478

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  LSE+Q +AI+++RL RLT L  +  ++ELN+L  EI    +
Sbjct: 479 ---------------ASFKLSEIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYEN 523

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S  +L+ +I  EL  +K      RRT I       ++DED I  +++ +T+S  GYV
Sbjct: 524 ILNSHEKLIDLIVSELEEIKARFGDERRTIINTSDYGIIKDEDLIPNKNIAITLSKNGYV 583

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL+ +R+Q+RGG G        +D V  +    THT +L F+S   VYK +  ++P 
Sbjct: 584 KRTPLTDFRSQKRGGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPE 643

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN +++++ E++ +++     E  +   Y++  TK+G  ++  +  + +I
Sbjct: 644 LSRQAKGVPFINFINIDKKEKVVSLLSV---EEYFEGTYLLTITKNGIAKKTSIEAYKRI 700

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +GK A+ L   DE+  V T   E+ +++    G+ V F    IR   GR + GV  + 
Sbjct: 701 QSNGKFALSLKEDDELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPM-GRTASGVIAMK 759

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K ++V+ +                                         S EG     
Sbjct: 760 LDKKERVVGVG---------------------------------------KSSEG----- 775

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L++ +KGFGK+T    +R+S+R+ KG+ + +V K    G L  V  V 
Sbjct: 776 ---------KYVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVKK---AGKLNYVGIVK 823

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             ++ I ++++G  IR  +N++   SR TKGV + +    + + S+  I   +I +E E 
Sbjct: 824 GYEEAIFLTNEGIAIRTELNQVSETSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEK 883

Query: 909 T 909
           +
Sbjct: 884 S 884


>gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a]
 gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a]
          Length = 834

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 363/892 (40%), Positives = 519/892 (58%), Gaps = 89/892 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 13  IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIYD L R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+
Sbjct: 73  RVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 133 AALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +D+ +      L+AL+ II+GPDFPT  +I+GR+GI++AY TGRGSI +R
Sbjct: 193 REVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIVGRSGIEDAYRTGRGSIRMR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R Q+VVTE+PYQVN   + EKIAELVR+ ++  I+D+RDE S R G R+
Sbjct: 253 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIGQRL 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L  +++ +V  + +V+V
Sbjct: 312 VIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQMIRYYVEHQVDVIV 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R          
Sbjct: 372 RRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARGQLMER---------- 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RL  L R  I +E   L   I E   I
Sbjct: 422 ----------------FTLSEIQATAILDMQLRRLAALERQRIIDEAAELRARISELEAI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   II +EL  V ++    RRTR+V    DM  ED I +ED+VVTV+  GY KR
Sbjct: 466 LASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQEDVVVTVTRGGYAKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+QRRGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +
Sbjct: 526 TKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQA 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + NIL+ +Q ERI  ++   + E +    Y+V ATK G  ++  LSDF     
Sbjct: 586 RSAKGQHVANILAFSQDERIAEVIALKDYEVAP---YLVLATKRGLCKKTALSDFDSNRA 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G +A+ L   DE+++       +D+LL ++  Q +RF     ++   GR + GV G+  
Sbjct: 643 GGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRF 702

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+++SM +V                       + G T +                  
Sbjct: 703 DAEDELLSMDVV-----------------------VPGTTAD------------------ 721

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +  G+ KRT   ++ +  R GKG+    +  ++  G LV    V+ 
Sbjct: 722 ----------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVDP 769

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +DQ+  ++  G ++R    ++R A R T GV +       +VV V R  ++E
Sbjct: 770 DDQLYAIASNGGVLRTIAKDVRRAQRQTMGVRLIDLETGVQVVGVARNADAE 821



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 114/241 (47%), Gaps = 31/241 (12%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           + LD  DE++S+    +  D       GQ + RF +S I+  A  + + +R ++  +  +
Sbjct: 393 IALDHLDEVISLIRNAESAD----AARGQLMERFTLSEIQATAILD-MQLRRLAALERQR 447

Query: 735 VISMAIVLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGN 784
           +I  A  L A      RI  ++ + A    QR++I  +  E+     D         EG+
Sbjct: 448 IIDEAAELRA------RISELEAILASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGD 501

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +S    ++L  +E  ++TV+  G+ KRT +  +R   R GKG++    + + E   +   
Sbjct: 502 MS---IEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQG---AALREDDIVEHF 555

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
           F    +  ++  ++KG + R   +E+   +R+ KG     I + ++DER+  V  +++ E
Sbjct: 556 FVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVIALKDYE 615

Query: 902 I 902
           +
Sbjct: 616 V 616


>gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
 gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
          Length = 804

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 350/872 (40%), Positives = 525/872 (60%), Gaps = 91/872 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K ARI GE
Sbjct: 10  VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL K A 
Sbjct: 70  VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL E VD
Sbjct: 130 EMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H+E   
Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247

Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           G R ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ +  S
Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +Y   
Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+                   
Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL    ++ 
Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+ YR+
Sbjct: 462 EIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRS 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       RG+ +
Sbjct: 522 QKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677
              L+L   E+I  +     D    N+L +V  TK G ++R  L +F     + G  A+K
Sbjct: 582 TAFLNLEDTEKIVALASLNGD---GNDLVIV--TKSGKIKRTALKEFENATSNRGVRAIK 636

Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  DEI+S      E + L+  TK+G  VRFP+S +R   GRN+ GV+ I L  GD+V+
Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S+ ++   D                                                   
Sbjct: 696 SVDVIPPGD--------------------------------------------------- 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++I++V
Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  G +IR PV+EI +  R TKGV +     D
Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794


>gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
 gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
          Length = 845

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 337/900 (37%), Positives = 540/900 (60%), Gaps = 79/900 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K ++S+SI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++N  Y K
Sbjct: 6   KEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YDA+ R+AQ +S+R  LI+GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +L+DL K+TVDF PNYDG+ + P V+  + PN+L+NG  GIAVGM TNIP H
Sbjct: 126 RMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           N+ EV+D C+A I++ DI  + L++ IRGPDFPT A+I   +  I +AY TG+G+I +R 
Sbjct: 186 NIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQVRA 245

Query: 253 VSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           ++ IE     +R  I++ EIPYQ+NK  ++EKI ELV+E++I  I ++RDESD+ G RVV
Sbjct: 246 LTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR + A+ +LN LY  T LQ+  ++NM+AL   KP    L  I+ +F+ +R+E+V++
Sbjct: 306 IELKRESEANFVLNSLYALTRLQTSININMIALLKGKPTLLNLKKIISSFIDYRKEIVIK 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LN+A+ R   L  + I++ N+D ++ +I+ +  P+ AR  L    W   +   LI
Sbjct: 366 RTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEE--TLI 423

Query: 432 DLIDDSSYTIGSD--------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +L  D  Y+   D                   +E Q + IL+L+L +LT L ++ +  E 
Sbjct: 424 EL--DRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEY 481

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            SL  EI   + IL + +RL+ IIK EL+ +K++    RRT+I+E       ED I ++ 
Sbjct: 482 ISLTKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKRRTKIIEDNSKFNQEDLIKKKK 541

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++V +S+ GY+K   +S Y  Q+RGGKG+S   ++++DFV  + +  TH ++L  S+ G 
Sbjct: 542 VIVILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENILCVSNFGR 601

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           ++  KV++LP  S  + GK ++N LSL  GE+IT+I      +      Y++ AT  G +
Sbjct: 602 IFSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFKKGN---YILIATLMGLI 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +    +  +SG I + L+ RDE++++++  + ++I+L T   + +RF  +++R+  
Sbjct: 659 KKISMDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSVRL-T 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR S+GV G+ + K ++++SM I++  D D                              
Sbjct: 718 GRKSMGVMGVKIQKDEKLVSM-IIVEKDKD------------------------------ 746

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ILT++E G+G RT   ++   +R  +G+      + N 
Sbjct: 747 ----------------------ILTITENGYGNRTKESEYLKKSRFIRGVSVIKNDERN- 783

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V   DQ+++ ++ G LIR+ V +I +  R TKG+++     D+ V  + R+
Sbjct: 784 -GKIVGAIQVERKDQVVIFTNYGILIRILVKDISVFKRNTKGIILIRKINDQVVSGIYRV 842


>gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 774

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 346/844 (40%), Positives = 512/844 (60%), Gaps = 85/844 (10%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFG
Sbjct: 1   GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG
Sbjct: 61  SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI 
Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIH 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TG+GSIV+R  + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  
Sbjct: 181 KAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITA 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL
Sbjct: 241 VRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQIL 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM
Sbjct: 301 DAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            +                            LSE QT+AIL++RL RLTGL RD I++E +
Sbjct: 361 SK--------------------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYD 394

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537
            L   I +  DIL+   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D
Sbjct: 395 DLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESD 454

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G 
Sbjct: 455 VLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGR 514

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K + +P     A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V
Sbjct: 515 VYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIV 572

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  +
Sbjct: 573 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 632

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV+G++L +GD V+  +++     D DE                           
Sbjct: 633 -RIATGVKGVNLREGDTVVGASLI----TDQDE--------------------------- 660

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L ++EKG+GKRT + ++    R GKG++   +++ N 
Sbjct: 661 ----------------------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN- 697

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G L  +  V  ++ +++++D G +IR  +  I    RAT GV +    +D ++V+   +
Sbjct: 698 -GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTV 756

Query: 898 RESE 901
             +E
Sbjct: 757 AVAE 760



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 456 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 512

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 513 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 561


>gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 875

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 361/892 (40%), Positives = 516/892 (57%), Gaps = 92/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M   G   ++ Y
Sbjct: 8   EHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSMFDSGFRPDRGY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC+R+ G+VMG YHPHG++AIYDAL R+AQ WSLR  LI+GQGNFGS   DP AA RYT
Sbjct: 68  NKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSSGNDPAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L D+ +DTVDFR NYDG  QEP VL +R+PN+LVNGG GIAVGMATNIP
Sbjct: 128 ESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV +G V  ++NP+      L AL+  I+GPDFPT A+ILG +GI++AY TGRGS
Sbjct: 188 PHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSGIEDAYRTGRGS 247

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R V  +E+ +  R  +VV+E+PYQVN   ++E IA LVR+ +I  IAD+ DES+ R 
Sbjct: 248 IRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGIADIADESNSRS 307

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI +KR A A V+LN L+++T LQ  F VNM+AL    P    L  I++ +V  + 
Sbjct: 308 GMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDDVPRTLRLDQIIRHYVKHQV 367

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ L KA +RAH+L GL  A+  LDEV+ +IR SP+ + AR  LM        
Sbjct: 368 DVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARPGLMS------- 420

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + E+Q  AIL+++L RL  L R  I + L  + +EI +
Sbjct: 421 -------------------LLEIDEIQATAILDMQLRRLAALERQRIIDTLAEIELEIAD 461

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL    R   II+ EL+ + D+    RRT+I+    D+  ED I +ED+VVT++  G
Sbjct: 462 LKDILEKPERQRSIIRDELMEIVDKYGDDRRTQIIPFDGDVSVEDLIAQEDVVVTITRTG 521

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + L
Sbjct: 522 YAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRAKAYDL 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ + N+L+    E+I  ++  P  E +    Y+V ATK G V++ KL+DF 
Sbjct: 582 PEANRNARGQHVANLLAFQPDEQIAQVIEIPNYEVAP---YLVLATKRGLVKKTKLTDFD 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
                G IA+ L   DE++       E+D+LL +  GQ +RF  +  A+R   GR + GV
Sbjct: 639 SNRAGGLIAINLREGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEALRPM-GRPTSGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G+    GD+++                                   I+ +K D      
Sbjct: 698 LGMRFNDGDELLG----------------------------------ISVVKPD------ 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        +F+L  ++  + KRT   D+ +  R GKG+    +   ++ G LV  
Sbjct: 718 -------------KFLLVATDGAYAKRTPIEDYPVQGRGGKGVLT--IQHDSKRGRLVGA 762

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V+++D++  ++  G +IR P  ++R A R TKGV + +      +++V R
Sbjct: 763 LIVDEDDELFAITSSGGVIRTPARDVRKAGRQTKGVRLMNLGDGTTLLAVAR 814



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 15/151 (9%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR +I  +  EI     D         +G++S    ++L  +E  ++T++  G+ KRT +
Sbjct: 472 QRSIIRDELMEIVDKYGDDRRTQIIPFDGDVS---VEDLIAQEDVVVTITRTGYAKRTKT 528

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  ++KG + R    ++  A+
Sbjct: 529 DLYRSQKRGGKGVQGATLKQDDIVQHF---FVCSTHDWILFFTNKGRVYRAKAYDLPEAN 585

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEI 902
           R  +G     + +   DE++  V  I   E+
Sbjct: 586 RNARGQHVANLLAFQPDEQIAQVIEIPNYEV 616


>gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
 gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
          Length = 804

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 350/872 (40%), Positives = 525/872 (60%), Gaps = 91/872 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K ARI GE
Sbjct: 10  VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL K A 
Sbjct: 70  VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL E VD
Sbjct: 130 EMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H+E   
Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247

Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           G R ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ +  S
Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +Y   
Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+                   
Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL    ++ 
Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+ YR+
Sbjct: 462 EIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRS 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       RG+ +
Sbjct: 522 QKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677
              L+L   E+I  +     D    N+L +V  TK G ++R  L +F     + G  A+K
Sbjct: 582 TAFLNLEDTEKIVALASLNGD---GNDLVIV--TKSGKIKRTALKEFENATSNRGVRAIK 636

Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  DEI+S      E + L+  TK+G  VRFP+S +R   GRN+ GV+ I L  GD+V+
Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S+ ++   D                                                   
Sbjct: 696 SVDVIPPGD--------------------------------------------------- 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++I++V
Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  G +IR PV+EI +  R TKGV +     D
Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794


>gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 889

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 356/893 (39%), Positives = 520/893 (58%), Gaps = 95/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM++SYL+YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KCA
Sbjct: 40  IQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYSKCA 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +D+P+      LD L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + +V+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          DL
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM----------DL 448

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E N L  +I +  DI
Sbjct: 449 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFGPDEAIQTVLSIPNYEVAK---YLVLATRSGKVKKTALAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F     ++   GR + G
Sbjct: 670 GGLIAVRLMTDENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+   +GD++++M +V   D+D D                                  
Sbjct: 730 VQGMKFREGDELLAMDVVW-GDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV 
Sbjct: 755 ----------------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGR--GSLVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              V ++DQ++ +   G +IR  V E++   R T+GV +    K++ ++S+ R
Sbjct: 797 AVIVEEDDQVMAIMKSGKVIRSNVAEVKRTGRNTQGVTLAKPDKNDEIISIAR 849



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802
           ADY++ +   +    QR+++  + +EI +   D   + +     E   ++L  +E  ++T
Sbjct: 487 ADYNDILAKPER---QRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVT 543

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+  GF KRT + ++R  +R GKGI+    +K+ E   +   F  + ++ ++  ++KG +
Sbjct: 544 VTHSGFIKRTKADEYRAQHRGGKGIKG---AKLREDDVVDHFFLTSTHNWLLFFTNKGRV 600

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            R+   E+   SR +KG     +     DE + +V  I   E+ 
Sbjct: 601 YRLKAYELPEGSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEVA 644


>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
          Length = 892

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 368/906 (40%), Positives = 533/906 (58%), Gaps = 67/906 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++ G +A+I NP+I    LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +V+T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVV+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILLTLRKMLEVFLEFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L +R     
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS VQ  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+ GII+ EL  ++D    PRRT I++    +ED D I  E  VV ++  
Sbjct: 468 DYKDILGRRERVFGIIEDELGQLRDRHAVPRRTEILDLAGGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYAVPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  ++ +L + + E IT+++   E     + L +   T  G ++R +LS F
Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLAVSEFNDDTDLLML---TTGGYIKRTRLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
             I  +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +R   GR + G
Sbjct: 645 SNIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDNELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR ++L +GD ++SM ++    AD                 I+   +E     +D   +G
Sbjct: 704 VRSMNLREGDSLVSMDVLPAELADQ----------------IAASVDE-----DDEGSDG 742

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                  +    +  ++L  S  G GKR     FR+  R+G G+RA       +   LV 
Sbjct: 743 G------ESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVG 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEI 902
           +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +  E+E 
Sbjct: 795 LRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 854

Query: 903 VDEAES 908
            D+ ES
Sbjct: 855 DDDTES 860


>gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
          Length = 894

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 357/906 (39%), Positives = 520/906 (57%), Gaps = 95/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KCA
Sbjct: 40  IQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCA 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  +DEV+ +IR S + E AR  LM          DL
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLM----------DL 448

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E N L   I +  DI
Sbjct: 449 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F  +  ++   GR + G
Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+   +GD+++ M +V   D+D D                                  
Sbjct: 730 VQGMKFREGDELLDMDVVW-GDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V ++DQI+ +   G +IR  V+E++   R T+GV      K++ ++S+ R  E +  
Sbjct: 797 AVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKDDD 856

Query: 904 DEAEST 909
           + AE+ 
Sbjct: 857 ESAENA 862


>gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 867

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 367/879 (41%), Positives = 530/879 (60%), Gaps = 94/879 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EM+ S++ YA++VI  RA+PD+RDGLKPVHRRILF M   G   +K Y KCA
Sbjct: 26  IVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRKCA 85

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              G V+G +HPHG+AA+YD++ R+AQD+S+R  +++G GNFGS DGDPPAA RYTE RL
Sbjct: 86  TTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEARL 145

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+TVDF+PN+D    EP+VL +R+PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 146 TKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPHNL 205

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D  V  I+NPD DL+ +MEI+ GPDFPTG  ILG +GI+  Y TG+G I +R  + 
Sbjct: 206 GETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTILGLSGIRETYRTGKGRITVRSAAS 265

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IE    +R +IVV ++PY VNKA ++EK+A+LV+EKRI  I+ +RDESDR +  R+VIEL
Sbjct: 266 IEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIVIEL 325

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFREEVV 369
           KR A+  V+LN+LY+ T LQ  F+ NM+AL       Y+P+  TL+  L  ++A ++ VV
Sbjct: 326 KRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQKSVV 385

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRTK+ L+KA  R H++ GL  A+ N+DEV+RIIR S N ETA++ L +R         
Sbjct: 386 LRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCER--------- 436

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S  Q + I+++RL RLT L R+ ++ EL+ L ++I+    
Sbjct: 437 -----------------FDFSIRQAQHIVDMRLGRLTALERERLQKELDELIVKIEYFNR 479

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           I++  S L  +I  EL  +K      RRT I    LD  EDE+ +  E++V+T++H GYV
Sbjct: 480 IINESSLLNQVICDELTDLKTRYANKRRTVIEPYSLDEFEDEELVKEEEVVITLTHFGYV 539

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+  Y+ Q RGG+G SG+  R++DFV  L   STH  +LFF++ G V++ K +++P 
Sbjct: 540 KRQPVDTYQQQHRGGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQIPE 599

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQ 667
              QA+G+A++N+L L +GE++ T++   E    +N   Y++ AT  G +++  L ++  
Sbjct: 600 AGRQAKGQAIVNLLQLVEGEKVRTVITVHE----FNREDYLLMATARGMIKKTSLYEYAN 655

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I ++G IA+ L   DE++ V+      +++L T  G  +RF  + IR   GRN+ GV GI
Sbjct: 656 IQKNGLIAINLRPDDEVIGVKVSRLHEEVILATAGGYSLRFDTNDIR-NTGRNTFGVSGI 714

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D+VI MA V       DE                                     
Sbjct: 715 KLRHSDKVIGMAAV-------DE------------------------------------- 730

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E+ +L +S+ G+GKR+   ++RI NR GKG+         + G L  +  +
Sbjct: 731 ---------ERHLLVISKNGYGKRSEFNEYRIQNRGGKGL--ITYKPTEQTGDLAGIASI 779

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           ND D II+++D G +IRV   EI I SR TKGV +  TA
Sbjct: 780 NDEDDIIIINDAGIVIRVATKEIPILSRVTKGVRLMRTA 818


>gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 876

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 357/899 (39%), Positives = 520/899 (57%), Gaps = 96/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC+
Sbjct: 43  VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD      L+AL++ I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 223 CEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVID 401

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM          +L
Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------NL 451

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E   L I+I +  DI
Sbjct: 452 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDI 495

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+KR
Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGS 615

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    +
Sbjct: 616 RDSKGQHVANLLQFTPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C  E+DI+L +KLG  ++F     ++   GR + 
Sbjct: 673 GGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+   +GD+++ M +V                                         
Sbjct: 733 GVQGMRFREGDELLDMDVV----------------------------------------- 751

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              + E  ++L       L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 752 ---AAETSKDL-------LVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E++
Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858


>gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 770

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 356/848 (41%), Positives = 527/848 (62%), Gaps = 86/848 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS
Sbjct: 1   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  
Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHR 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+GSIV+R  + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +
Sbjct: 181 AYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAV 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES R+G R VIE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+ 
Sbjct: 241 RDESSREGVRFVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIID 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++EV+VRRT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM 
Sbjct: 301 NYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMS 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE Q++AIL++RL RLTGL RD I++E N 
Sbjct: 361 R--------------------------FELSERQSQAILDMRLRRLTGLERDKIQSEYND 394

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDM 538
           L   I +  DIL+   R++ IIK+E+  VK +    RRT ++ G +L +EDED I  ED+
Sbjct: 395 LLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDV 454

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++T+S+ GY+KR+    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG V
Sbjct: 455 LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRV 514

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P     A+G  ++N+L L++GE I TI+   +++ +  N Y  F T+ G V+
Sbjct: 515 YRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVK 572

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  +S+F  I ++G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   G
Sbjct: 573 RTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-G 631

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG++L +GD+V+  +                       R+++G           
Sbjct: 632 RTATGVRGVNLREGDKVVGAS-----------------------RIVNG----------- 657

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                              Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  
Sbjct: 658 -------------------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN-- 696

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L  +  +N N+ I++++D G +IR  V  I    R+T GV +    ++ ++V+V  + 
Sbjct: 697 GPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV- 755

Query: 899 ESEIVDEA 906
           E EI D++
Sbjct: 756 EQEIEDKS 763


>gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni]
          Length = 844

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 362/916 (39%), Positives = 541/916 (59%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  E  VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RR  + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E I  I+P  + DES      + F TK+G V+R  
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEEIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  D +++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDGLVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLEN 686

Query: 688 -ETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            E+ + +  +L   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKVLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828


>gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 876

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 357/899 (39%), Positives = 520/899 (57%), Gaps = 96/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC+
Sbjct: 43  VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD      L+AL++ I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVID 401

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM          +L
Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------NL 451

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E   L I+I +  DI
Sbjct: 452 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDI 495

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+KR
Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGS 615

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    +
Sbjct: 616 RDSKGQHVANLLQFAPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C  E+DI+L +KLG  ++F     ++   GR + 
Sbjct: 673 GGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+   +GD+++ M +V                                         
Sbjct: 733 GVQGMRFREGDELLDMDVV----------------------------------------- 751

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              + E  ++L       L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 752 ---AAETSKDL-------LVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E++
Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858


>gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
 gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
          Length = 876

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 356/899 (39%), Positives = 520/899 (57%), Gaps = 96/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC+
Sbjct: 43  VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD      L+AL++ I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVID 401

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM          +L
Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------NL 451

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E   L I+I +  DI
Sbjct: 452 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDI 495

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+KR
Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGS 615

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    +
Sbjct: 616 RDSKGQHVANLLQFTPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C  E+DI+L +KLG  ++F     ++   GR + 
Sbjct: 673 GGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+   +GD+++ M +V                                         
Sbjct: 733 GVQGMRFREGDELLDMDVV----------------------------------------- 751

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              + E  ++L       L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 752 ---AAETSKDL-------LVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               V + DQ++ +   G +IR  +NE++   R T+GV +    K + ++S+ R  E++
Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDINEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858


>gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
 gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
          Length = 871

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 362/907 (39%), Positives = 525/907 (57%), Gaps = 98/907 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M   G   ++ Y KC+
Sbjct: 23  IEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDRAYSKCS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+ AIYD L R+ QDW+LR  L  GQGNFGS   DP AA RYTE R+
Sbjct: 83  RVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGSPGNDPAAAPRYTETRM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++ D+ K+TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 AQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + NPD   + L E     I+GPDFPTGA ILGR+GI +AY TGRGSI +R
Sbjct: 203 REVAEGVAWYLANPDASREELREALIARIKGPDFPTGATILGRSGIDDAYRTGRGSITMR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN   +  KIA+L +E RI  IAD+RDE S R G R+
Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLALKIADLTKEGRIQGIADIRDETSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  FS NM+AL    P   ++   +  +V  + +V+ 
Sbjct: 322 VIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSIDAFIHHWVNHQLDVIS 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT +LL +A D+ H+L G   A+ NLDEV+ +IR SP  E AR  L++           
Sbjct: 382 RRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVEEARGGLIE----------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + ++Q  AIL L+L RL  L R  I +E + L  +I +  DI
Sbjct: 431 ---------------LLGIDDIQATAILNLQLRRLAALERQKIIDEHDDLERQILDYRDI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  + D     RR+ I+    ++  ED I  ED+VVT++  GYVKR
Sbjct: 476 LASPQRQRDIVGSELSEIVDRYGDERRSTILPYGGEVSMEDLIAEEDVVVTITRGGYVKR 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  +R++D V   F+ +TH  +LFF++LG VY+ K + LP GS
Sbjct: 536 TRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGS 595

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +++G+ + N+L+   GE I  ++     E   ++ Y+V AT+ G V++ +LS++     
Sbjct: 596 RESKGQHVANLLAFQPGESIAQVLALRNYE---DHEYLVLATRSGLVKKTRLSEYDTNRS 652

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723
           +G IA+KL      S DE++       +ND++L ++LGQ +RF    +++R   GR + G
Sbjct: 653 AGLIAIKLREYDDGSVDELVKAMPVNADNDLILISRLGQSIRFTADDASLRPM-GRGTSG 711

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+  A GD+++S A V+  DAD                                    
Sbjct: 712 VIGMKFADGDELLS-ADVVKDDAD------------------------------------ 734

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V++ GF KRT+  ++R+  R G+G++   +  + + G LV 
Sbjct: 735 ----------------LFVVTDGGFAKRTAISEYRVQGRGGQGVKVAKL--VEDRGHLVG 776

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                 +D+++++ +KG ++R  V E+    R T+GV      K +R+++V R  E  + 
Sbjct: 777 ALITEQDDEVLVIMEKGKIVRSAVAEVNRTGRNTQGVTFAKPDKKDRIIAVARNVERSLN 836

Query: 904 DEAESTE 910
           DE ++ E
Sbjct: 837 DEDDTAE 843


>gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon]
          Length = 843

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 348/905 (38%), Positives = 546/905 (60%), Gaps = 98/905 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VS+ DEM +SY+ YA++VI+GRA+PD RDGLKPVHRRIL+GM ++GV  N+ + K A
Sbjct: 14  VIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YD + RMAQD+S R  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 74  RIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYTEARL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL KDTV++ PN+D S +EP +L A+ PN+L+NG  GIAVGMATN+P HNL
Sbjct: 134 SKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG + VI+ P++ ++ LM+II+ PDFPTG +I+G  GIK AY TGRGSI IR  + 
Sbjct: 194 TEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRAYETGRGSIRIRAKAE 253

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G +E+IV+ EIPYQVNK+ ++E+IAE  ++ ++  I+ LRDESDR+G R+VIELK
Sbjct: 254 IE-VKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRIVIELK 312

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
            GA++ +ILN+LY++T L++ F V  +AL   +P   TL  +++ ++  R+EV +RR +Y
Sbjct: 313 AGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIECYIKHRKEVTIRRLQY 372

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H+L GL IA++N+DEV+R+I+ + + +TA+  L+ R               
Sbjct: 373 ELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR--------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q + IL++RL+RL+ L RD I  E   L  +I    ++L S +
Sbjct: 418 -----------FELSEEQAKEILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEA 466

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+  ++K++L+  KD+    RRT I E ++ + + D +  +++++ ++   YVKR+P  +
Sbjct: 467 RIYELLKEDLIEQKDKYGDARRTNI-EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADI 525

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ Q RGGKG + +  +++D + +    ST   ++FF+  G  Y+ K + +P  S  ++G
Sbjct: 526 FKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKG 585

Query: 616 KALINI----LSLNQGERITTIMPFPED-----ESSWNNLYVVFATKHGNVRRNKLSDFI 666
           K L+NI    +S  + E+  T +  PE+     E++    Y+VFATK G V+R+ L+   
Sbjct: 586 KPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLK 645

Query: 667 QINRSGKIAMKLDSRDEILSV----------ETCTQENDILLTTKLGQCVRFPISAIRVF 716
            I  +G +A++    D +  V          +    +N I+L++K G+ + F    +R  
Sbjct: 646 AIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREM 705

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVRG+ L K D++ S+                                      
Sbjct: 706 -GRYAAGVRGMRLEKDDEIASV-------------------------------------- 726

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              +++  +S+E+ +         +T++EKG+GKRT    +R ++R GKG+ +    + N
Sbjct: 727 --EALDVGVSKEKSR--------AVTITEKGYGKRTKLDAYRETHRGGKGVISIKTGERN 776

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +V +  V + D++++ +  G + ++ V  I +  R T+GV I +  K ERVV+V+ 
Sbjct: 777 --GKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVRIMNVKKGERVVAVDI 834

Query: 897 IRESE 901
           +  +E
Sbjct: 835 LSATE 839


>gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
 gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
          Length = 830

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 365/889 (41%), Positives = 517/889 (58%), Gaps = 93/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 12  IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG YHPHG+ +IYD + R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+
Sbjct: 72  RIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+  DTVDF PNYDG  QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 AALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NPD      L+AL+ II+GPDFPT  +I+GR GI++AY TGRGSI +R
Sbjct: 192 REVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIVGRQGIEDAYRTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R Q+VVTE+PYQVN   + EKIAELVR+ RI  I+D+RDE S R G R+
Sbjct: 252 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNRISGISDVRDETSARIGQRL 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR A A V+LN LY++T LQ  F  NM+A+    P    L  +++ +V  + +V+V
Sbjct: 311 VIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVDGVPRTLRLDQMIRYYVEHQVDVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++R HVL GL IA+ +LD+V+ +IR + + + AR +LM R          
Sbjct: 371 RRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARGQLMTR---------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                   Y+        LSE+Q  AIL+++L RL  L R  I +E   L  ++ E   I
Sbjct: 421 --------YS--------LSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVTELEAI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   II +EL  V D+    RRTRIV    +M  ED I +ED+VVTV+  GY KR
Sbjct: 465 LASPQRQREIIGEELKEVVDKFGDERRTRIVPFEGEMSIEDLIAQEDVVVTVTRGGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +
Sbjct: 525 TKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQA 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + NIL+  Q ERI  +M   +  ++    Y+V ATK G  +++ L+DF     
Sbjct: 585 RSAKGQHVANILAFGQDERIAEVMAIRDYAAAP---YLVLATKRGLCKKSALTDFDSNRA 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G +A+ L   DE++       ++D+LL ++  Q +RF     ++   GR + GV G+  
Sbjct: 642 GGLVAINLREDDEVIGARLVGADDDLLLVSRNAQSIRFHADDEQLRPMGRATAGVIGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+++S+ ++                                  K DS+         
Sbjct: 702 DADDELLSIEVI----------------------------------KPDSTAS------- 720

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGALVAVFPV 847
                     +L  +  GF KRT   ++ +  R GKG+    +  S+ N +GALV    V
Sbjct: 721 ----------LLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIVPSRGNLVGALV----V 766

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +DQ+  ++  G ++R    ++R A R T GV +       +VV V R
Sbjct: 767 EPDDQLYAIASNGGVLRTVARDVRQAQRQTMGVKLIDLETGVQVVGVAR 815



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR +I  + +E+     D         EG +S    ++L  +E  ++TV+  G+ KRT +
Sbjct: 471 QREIIGEELKEVVDKFGDERRTRIVPFEGEMS---IEDLIAQEDVVVTVTRGGYAKRTKT 527

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++    + + E   +   F    +  ++  ++KG + R   +E+   +
Sbjct: 528 DLYRSQKRGGKGVQG---AALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQA 584

Query: 875 RATKG---VVIFSTAKDERVVSVERIRE 899
           R+ KG     I +  +DER+  V  IR+
Sbjct: 585 RSAKGQHVANILAFGQDERIAEVMAIRD 612


>gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
          Length = 917

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 366/904 (40%), Positives = 521/904 (57%), Gaps = 97/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 42  IQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 101

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 102 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 161

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 162 APLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNL 221

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD      L+AL+  I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 222 REVADGVHWALDHPDATREELLEALIARIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 281

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 282 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSGRTGQRL 340

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +VA + +VV 
Sbjct: 341 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVAHQIDVVA 400

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM          DL
Sbjct: 401 RRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLM----------DL 450

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL ++L RL  L R  I +E N L   I +  DI
Sbjct: 451 LD----------------VDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYEDI 494

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +       RRTRI+    +M  ED I  E++VVTV+H G++KR
Sbjct: 495 LAKPERQRQIVGDELDEIVSRYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHAGFIKR 554

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF+  G VY+ K + LP GS
Sbjct: 555 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPEGS 614

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V ATK G V++ +LS++    +
Sbjct: 615 RDSKGQHVANLLQFAPDEHIQTVLSIPNYEVAE---YLVLATKSGKVKKTRLSEYDSPRQ 671

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      +  DE++    C   +DI+L ++ G  ++F     ++   GR + G
Sbjct: 672 GGLIAVRLMTDENGEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQTAG 731

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+   +GD ++SM +V                         G T+             
Sbjct: 732 VQGMKFREGDSLLSMDVVW------------------------GQTD------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       K+ F++T   +GF KRT+  ++R+  R+G G++A  +  +   G LV 
Sbjct: 755 ------------KDLFVVT--NEGFAKRTAISEYRLQGRNGYGVKALQL--VEGRGELVG 798

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+++DQ++ +   G +IR  VNE+    R T+GV +    K + ++S+ R  E+E  
Sbjct: 799 ALVVDESDQVLAIMKSGKVIRSNVNEVNRTGRTTQGVTLAKPDKGDEIISIARNAETE-- 856

Query: 904 DEAE 907
           DE E
Sbjct: 857 DELE 860


>gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 865

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 351/900 (39%), Positives = 532/900 (59%), Gaps = 88/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I   ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 5   ENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYT
Sbjct: 65  RKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  L++DL K+TV+  PNYD + +EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++   + V+ NP + +D +M ++  PDFPTG +I G  GIK A+ TGRG +++R
Sbjct: 185 PHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLLLR 244

Query: 252 GVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            V  +E+   + D+++++V EIPY VNK+ ++E+IA+L+  K I  IADLRDESD+ G R
Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IELKRG   +VILNQL++Y+ LQ  F  NM+AL+   P+   +  ++ A+V  R EVV
Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIEVV 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L G   A+ ++DEVVR+IR S N E AR EL+QR         
Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR--------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  A+L+L+L +LTGL  + I  E   L  +I     
Sbjct: 416 -----------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRA 458

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S + +  II++ELL ++    + R+T+I+    ++  ED I  E +++T+S   Y+K
Sbjct: 459 VLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVIITISEDDYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGV-VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+  +R QRRGG+G +G+ + R+ED +  L++ STH  +L F++LG  Y  KVW++P 
Sbjct: 519 RMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPE 578

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +++GK LIN+L  +   E+I T++     E      Y++ ATK G V++ +LS+F  
Sbjct: 579 TGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQ---AYILMATKKGIVKKTELSEFSH 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R G  A+ +   DE+++    +    I+L T  G  VRF    +R   GR + GV+G+
Sbjct: 636 PRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPM-GRTARGVKGV 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L               D DY                + G                    
Sbjct: 695 TLKD-------------DTDY----------------VVG-------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C+ +   E  IL V E GFGKR++  DFR +NR G G+R+   S+ N  G +V    V
Sbjct: 706 --CEAVNGTET-ILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERN--GNVVGALCV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D ++++S +G  +R+ + ++R+  R T+GV + +  + + +V+++++  S+ VD A+
Sbjct: 761 TDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDVDNAK 820


>gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 817

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 340/892 (38%), Positives = 525/892 (58%), Gaps = 84/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM++SY+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM Q+G+  N  Y
Sbjct: 3   EGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y+ + RMAQ W+LR  LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D S +EP VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 123 EVRMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +    A I+N  I ++ +ME I+ PDFPTG +I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIYGYEGVKKAFYTGRGRIVLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+E+  G R+ I+V EIPYQVNKA M+ +  EL+RE ++  I  +RDESDR G R+V
Sbjct: 243 AKVHLEEIQG-RQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+  +  ++LN L++YTSLQ+ F+VN +AL   KP +  +  +++ FV  R++V++R
Sbjct: 302 YLLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVKGKPVQLNIKDLIQHFVDHRQDVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L K +DR H L G    + +LD+++ +I+ S +   A   L++            
Sbjct: 362 RTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIK------------ 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+R+IL++RL  LT L    I+ E   L  +I    ++L
Sbjct: 410 --------------MFKLSENQSRSILDMRLQNLTSLELKKIKKEYEELVKKIAYLKNVL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              S  + IIK+ELL ++D+    RRT+I     ++  ED I  E +V+T+SH GY+KR 
Sbjct: 456 IQHSIRMQIIKKELLDIQDKYQDKRRTQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G  G   R+ DF   L I + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLSEYKRQGRGGIGNRGASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++ L   +++   +   +  ++    N YV+  T+ G +++  L ++ +  
Sbjct: 576 ISKGRAIQNMIHLQPDDKVNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+ +   D +L        + + +  K G+ +RF    +R   GRNS GVRGI+L
Sbjct: 636 KDGINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRA-TGRNSSGVRGINL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +   D VI M             IC                           VEG     
Sbjct: 695 SISEDTVIGM-------------IC---------------------------VEGQ---- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  ++ ++L VSEKGFGKRT+  D+RI+NR GKGI+  ++++  + G+L+++  V 
Sbjct: 711 -------EKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQ--KTGSLISIKHVT 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + D ++++   G +IR+ V++IR+  R T+GV + +  + + +  VE++ ++
Sbjct: 762 NQDDLMIIKKSGIIIRISVSDIRVMGRDTQGVRLINLKEKDEIADVEKVSQT 813


>gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8]
 gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II
           subunit A
 gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 345/872 (39%), Positives = 526/872 (60%), Gaps = 91/872 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K ARI GE
Sbjct: 10  VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL + A 
Sbjct: 70  VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL E VD
Sbjct: 130 EMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H+E   
Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247

Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           G R ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ + A+
Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDAN 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +Y   
Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +   RAHV+ GL  A   +  VV I+R S + E+AR+ LM+                   
Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL    ++ 
Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+E L +K +   PRRT + +  ++  +E+ IV ED+V+T+SH GY+K  PL+ YR+
Sbjct: 462 EIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRS 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +   + ++D V  + +    +S LF ++LG  Y  K ++L       RG+ +
Sbjct: 522 QKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677
              L+L   E+I  +        +     +V ATK G ++R  L +F     + G  A+K
Sbjct: 582 TAFLNLEDTEKIVALASL-----NGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIK 636

Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  DEI+S      E + L+  TK+G  +RFP+S +R   GRN+ GV+ I L  GD+V+
Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S+ ++   +                                                   
Sbjct: 696 SVDVIPPGE--------------------------------------------------- 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++I++V
Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  G +IR PV+EI +  R TKGV +     D
Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794


>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
 gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
          Length = 875

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 366/886 (41%), Positives = 531/886 (59%), Gaps = 70/886 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 19  IIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 139 QALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+++G +A+I+NPD+    L+ +I GPDFPTG  ILGR GI+  Y  GRGSI +RGV+
Sbjct: 199 LNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREGIRETYLGGRGSITMRGVA 258

Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE        DR+ +++TE+PYQ NKA ++E+IAELV +K++  I+D+RDESDR G R+
Sbjct: 259 AIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKKLEGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN L++ T+LQS FS  M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 319 VVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETIE 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L  R          
Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHG-------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 431 ------------------LSDIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+ GII+ EL  + D   TPRRT I++    +ED D I  E  VV V+  GY+KR
Sbjct: 473 LGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGGGLEDIDLIANERSVVLVTETGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  S
Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E IT+++P  E     +++ ++  T+ G ++R +LS F  I  
Sbjct: 593 RTAKGTPVVQLLPIPREEAITSLIPVSEFN---DDMDLLMLTRGGFIKRTRLSAFSNIRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ +  G  + F +S   +R   GR + GVR ++
Sbjct: 650 NGLIAINLEEGDALRWVRLAVPGDSVLIGSNAGMTIHFRLSDEELRPL-GRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD ++SM ++    AD   RI      SA+      D EE     + SS +G     
Sbjct: 709 LREGDGLVSMDVLPVELAD---RIA----QSAE------DDEE----DDASSGDG----- 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA      ++  ALV +  + 
Sbjct: 747 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDD--ALVGLRVLG 795

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V
Sbjct: 796 AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEV 841



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 519 RIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDF 576
           RI +   D E++D    +   V+  S  G  KRVP++ +R Q+R G G   +  R  +D 
Sbjct: 728 RIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDDA 787

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  L ++     VL  S  G + +     +P    Q+R    + +  L++G+R++ ++  
Sbjct: 788 LVGLRVLGAGEEVLLVSEKGVIVRTSADAIP---QQSRAATGVRLQRLDKGDRLSEVVLV 844

Query: 637 P 637
           P
Sbjct: 845 P 845



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+ ++ V+E G+ KR    +F  ++R  +G +A   S+  E  A+      ND+D
Sbjct: 513 DLIANERSVVLVTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            ++L SD+G    +P   +   SR  KG   V +    ++E + S+  + E
Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLIPVSE 620


>gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni]
          Length = 844

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 362/916 (39%), Positives = 538/916 (58%), Gaps = 126/916 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  E  VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R   HIEK + +++ IV+ E+PYQ NKA ++ +IAELV+EK+I  I+++RDE
Sbjct: 238 TGRGRVKVRAKPHIEKKT-NKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDE 296

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+
Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +  
Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  
Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+
Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  K
Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           V+++P GS  A+GKA++N+++L   E+I  I+P  + DES      + F TK+G V+   
Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKCTN 626

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687
           LS++  I   G  A+ LD  DE+++                                   
Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                TQ   +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              EQ IL++S 
Sbjct: 746 ---------------------------------------------------EQEILSISA 754

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV
Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812

Query: 866 PVNEIRIASRATKGVV 881
            +  IR A R T GV+
Sbjct: 813 DMQSIRKAGRNTSGVI 828



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   +E+++++
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601


>gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
 gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 886

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 357/901 (39%), Positives = 521/901 (57%), Gaps = 96/901 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KCAR+ GE
Sbjct: 27  LQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCARVVGE 86

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTECR+   A 
Sbjct: 87  VMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRMAPLAM 146

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+ EV +
Sbjct: 147 EMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAE 206

Query: 201 GCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           G    +D+PD      LD L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R V + 
Sbjct: 207 GVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNT 266

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELK 315
           E+  G R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+V+ LK
Sbjct: 267 EEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVLK 325

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ RRT Y
Sbjct: 326 RDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIARRTAY 385

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           L  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM             DL+D
Sbjct: 386 LKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM-------------DLLD 432

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        + EVQ  AIL ++L RL  L R  I +E N L  +I +  DIL+   
Sbjct: 433 -------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPE 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR     
Sbjct: 480 RQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADE 539

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS  ++G
Sbjct: 540 YRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKG 599

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + + N+L     E I T++  P  + +    Y+V AT+ G V++  L+++    + G IA
Sbjct: 600 QHVANLLQFGPDETIQTVLSIPNYDVAK---YLVLATRSGKVKKTALAEYDSPRQGGLIA 656

Query: 676 MKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
           ++L      ++ DE++    C  ++DI+L +K G  ++F  +  ++   GR + GV+G+ 
Sbjct: 657 VRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMK 716

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD++++M +V   D+D D                                       
Sbjct: 717 FRDGDELLAMDVV-QGDSDRD--------------------------------------- 736

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV    V 
Sbjct: 737 -----------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGR--GSLVGAVIVE 783

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++DQI+ +   G +IR  V E++   R T+GV +    K++ ++S+ R  E++  D+AE 
Sbjct: 784 ESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEETD-EDDAEQ 842

Query: 909 T 909
            
Sbjct: 843 A 843


>gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1]
 gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1]
          Length = 804

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 347/872 (39%), Positives = 525/872 (60%), Gaps = 91/872 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K ARI GE
Sbjct: 10  VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL K A 
Sbjct: 70  VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL E VD
Sbjct: 130 EMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H+E   
Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247

Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           G R +++V+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ +  S
Sbjct: 248 GKRVKRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +Y   
Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+                   
Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL    ++ 
Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+ YR+
Sbjct: 462 EIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRS 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       RG+ +
Sbjct: 522 QKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677
              L+L   E+I  +     D    N+L +V  TK G ++R  L +F     + G  A+K
Sbjct: 582 TAFLNLEDTEKIVALASLNGD---GNDLVIV--TKSGKIKRTALKEFENATSNRGVRAIK 636

Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  DEI+S      E + L+  TK+G  +RFP+S +R   GRN+ GV+ I L  GD+V+
Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S+ ++   +                                                   
Sbjct: 696 SVDVIPPGE--------------------------------------------------- 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++I++V
Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  G +IR PV+EI +  R TKGV +     D
Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ V++ G  KRT+  +F  +  S +G+RA  +   +EI   V+   VN   + ++V+ K
Sbjct: 606 LVIVTKSGKIKRTALKEFENAT-SNRGVRAIKIEPGDEI---VSARVVNSEKETLIVATK 661

Query: 860 -GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            G  IR PV+++R   R   GV        + VVSV+ I   E
Sbjct: 662 MGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGE 704


>gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1]
          Length = 837

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 355/899 (39%), Positives = 545/899 (60%), Gaps = 92/899 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+ + K ARI 
Sbjct: 7   ISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSARIV 66

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDA+ RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 67  GDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 126

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   + D+ K+TVDFRPNYD +  EPVVL  R PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 127 AGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLGEL 186

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            +  + ++D+    +D LM+ ++GPDFPTG  +    G+ +AY TGRG++ +RG   IE+
Sbjct: 187 CNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEIEE 246

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                + IV+ EIPY +NK++++EKIA LV E+RI  +ADLRDESDR+G RVVI+LKRG 
Sbjct: 247 RKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKRGT 306

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L+S + +NM+A+   +P+   L   L  F+  R E+++RRT+Y L 
Sbjct: 307 IPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYDLR 366

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LMQR                  
Sbjct: 367 KAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------------ 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q++AIL++RL RLT L  + + +E   L  +I+    IL +   L 
Sbjct: 409 --------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLR 460

Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            ++++E   ++D   T RRT ++ + L  +  ED I  +D+V+T+S  GY+KR  L  Y+
Sbjct: 461 QVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQ 520

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKG +G+   D+DFV +    + H  +L F++ G +++ KV ++  GS  A+G  
Sbjct: 521 QQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVH 580

Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           + N+L L + E +TT++    F ED       + +F TK G V+R+  S + +  + G I
Sbjct: 581 IANLLPLEKDEWVTTVLSVREFAEDR------FFLFVTKRGMVKRSSASLYARARKGGLI 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     ++ ++LTT  G  +RF    +R   GR++ GV+G++L+  D+
Sbjct: 635 AVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDR 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++ A+                        + GD         D+S E            
Sbjct: 694 VVACAV------------------------LPGD---------DTSTE------------ 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                I+++S  G+GKRT    +R+ +R GKG++   V+   + G ++   PV D++ ++
Sbjct: 709 -----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALV 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE---AESTE 910
           L++    +IR+ V+E+R   RAT GV++    +   VV  +R+ E E+V+E   A+S+E
Sbjct: 762 LLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 820


>gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
 gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
          Length = 904

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 357/901 (39%), Positives = 521/901 (57%), Gaps = 96/901 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KCAR+ GE
Sbjct: 45  LQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCARVVGE 104

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTECR+   A 
Sbjct: 105 VMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRMAPLAM 164

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+ EV +
Sbjct: 165 EMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAE 224

Query: 201 GCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           G    +D+PD      LD L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R V + 
Sbjct: 225 GVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNT 284

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELK 315
           E+  G R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+V+ LK
Sbjct: 285 EEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVLK 343

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ RRT Y
Sbjct: 344 RDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIARRTAY 403

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           L  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM             DL+D
Sbjct: 404 LKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM-------------DLLD 450

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        + EVQ  AIL ++L RL  L R  I +E N L  +I +  DIL+   
Sbjct: 451 -------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPE 497

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR     
Sbjct: 498 RQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADE 557

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS  ++G
Sbjct: 558 YRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKG 617

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + + N+L     E I T++  P  + +    Y+V AT+ G V++  L+++    + G IA
Sbjct: 618 QHVANLLQFGPDETIQTVLSIPNYDVAK---YLVLATRSGKVKKTALAEYDSPRQGGLIA 674

Query: 676 MKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
           ++L      ++ DE++    C  ++DI+L +K G  ++F  +  ++   GR + GV+G+ 
Sbjct: 675 VRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMK 734

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD++++M +V   D+D D                                       
Sbjct: 735 FRDGDELLAMDVV-QGDSDRD--------------------------------------- 754

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV    V 
Sbjct: 755 -----------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGR--GSLVGAVIVE 801

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++DQI+ +   G +IR  V E++   R T+GV +    K++ ++S+ R  E++  D+AE 
Sbjct: 802 ESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEETD-EDDAEQ 860

Query: 909 T 909
            
Sbjct: 861 A 861


>gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
 gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 854

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 366/903 (40%), Positives = 529/903 (58%), Gaps = 96/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KCA
Sbjct: 13  IEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRSFNKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG+YHPHG++AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 73  RVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ K TVDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 133 APLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSSGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + NP       L+AL++ I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 193 REVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQILGHKGIEDAYRTGRGSITMR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+   +R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE S R G R+
Sbjct: 253 AVVNVEEIQ-NRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGIADLRDETSGRTGQRL 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++TSLQ  FS NM+A+    P   +L   ++ +VA + EV+V
Sbjct: 312 VVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVDGVPRTLSLDAFIRHWVAHQMEVIV 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++LLN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR               L
Sbjct: 372 RRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEAR-------------GGL 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL+              + ++Q  AIL+++L RL  L R  I++E   L +EI E   I
Sbjct: 419 IDLLG-------------IDDLQVNAILDMQLRRLAALERQKIQDENAKLELEIAEYNSI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S  R   I+ +EL  + ++    RRT+I+ G   DM  ED I  E+MVVT++  GYVK
Sbjct: 466 LASEDRQRTIVSEELAEIVNKFGDERRTQIMLGYDGDMSMEDLIPEEEMVVTITRGGYVK 525

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L   
Sbjct: 526 RTRSDNYRSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEA 585

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+    E+I  ++   + + S    Y+V ATK+G V++ +L D+    
Sbjct: 586 GRDAKGQHVANLLAFQPDEKIAQVLDLKDYQQS---PYLVLATKNGLVKKTRLEDYDTNR 642

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S +  ++ +D+LL ++ GQ +RF  +  A+R   GR + GV G+
Sbjct: 643 SAGVIAINLRDEDELVSAQLVSESDDMLLVSRKGQSIRFTATDEALRPM-GRATSGVTGM 701

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              + D++++  +V                           TE+                
Sbjct: 702 KFRQDDELLAANVV---------------------------TED---------------- 718

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      ++  V+E G+ KRT+  ++R   R G GI+   +  + + G LV    V
Sbjct: 719 ----------SYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKL--VEDRGDLVGALIV 766

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D+D++++V + G ++R  V E+    R T GV+     K++R++ V R RE  +  E+E
Sbjct: 767 QDDDEVLVVMEGGKVVRSNVAEVPAKGRDTMGVIFAKPDKNDRIIEVARNRERGL--ESE 824

Query: 908 STE 910
            TE
Sbjct: 825 ETE 827


>gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss]
 gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14]
 gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A
 gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 833

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 348/891 (39%), Positives = 527/891 (59%), Gaps = 89/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG A IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  ++ FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ NP   ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++VI+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q+ AILELRL +LTGL  D ++ E N L  +I     +
Sbjct: 413 ---------------LFGFSEAQSLAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRT I     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTTIEMDAGDVRDIEDIIADESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F+++G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y++ ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLLLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIVNDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +SL   +  +    V+  D                                         
Sbjct: 694 VSLKNEEDFVVSCQVVTDD----------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++    
Sbjct: 713 -----------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRN--GDVLGAIS 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 760 VTDFDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
 gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 865

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 345/877 (39%), Positives = 533/877 (60%), Gaps = 66/877 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + 
Sbjct: 14  EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G  ++I NP ++   L EII+GPDFPTG  ILGR GIK  + TGRGSI 
Sbjct: 194 IPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQILGRDGIKETFKTGRGSIT 253

Query: 250 IRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE+    +  +++ +++TE+P+Q NKAA++E+IA+LV EK++  I+D+RDESDR
Sbjct: 254 MRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F+ FR
Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +AR  L        
Sbjct: 374 VETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVSARENLQ------- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS  Q  AIL+++L RLT L  D I+ E + L  +I 
Sbjct: 427 -------------------ADHELSATQAEAILQMQLRRLTALEADKIKGEHDELTRKIN 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL+S+ R+  II +EL  + +   +PR+T I++    ++D D I  +  VV ++  
Sbjct: 468 LYKQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + +  RG +G++G   +++D V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+ S  A+G   + +L + + E+IT+++     +S  N+ Y++  TK G ++R  LS F
Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFDNDCYLLMLTKAGFIKRTSLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V    + + +L+ ++ G  + F   I+ +R   GR + G
Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ ++L KGD ++SM ++    +D  +++                +E+IT  ++D ++E 
Sbjct: 704 VKSMNLRKGDNLVSMDVLT---SDLVDQLAK--------------SEDITK-ESDENLEV 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N SE           ++L  S  G GKR     FR+  R+G G+RA      +++  LV 
Sbjct: 746 NSSE---------GPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIKDDV--LVC 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  + + ++++ V++KG ++R   ++I   SRA  GV
Sbjct: 795 LKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGV 831



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 70/277 (25%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N+  VV  T+ G ++R  +++F   +R   GK   K    DE+    +C   + +LL + 
Sbjct: 517 NDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSD 576

Query: 702 LGQCVRFPISAIRV-FAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKH 757
            G  V + + A RV  + R + G   + L    + +++ S+  V   D D     CY+  
Sbjct: 577 RG--VSYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFDND-----CYL-- 627

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                      L +++ GF KRTS   F
Sbjct: 628 -------------------------------------------LMLTKAGFIKRTSLSAF 644

Query: 818 RISNRSGKGIRATDVSKIN-EIG-ALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIA 873
                    IR+  +  IN E G AL  V    + D +++ S  G  I  R+ +NE+R  
Sbjct: 645 -------SKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPL 697

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            R  +GV   +  K + +VS++ +  S++VD+   +E
Sbjct: 698 GRTARGVKSMNLRKGDNLVSMD-VLTSDLVDQLAKSE 733


>gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
 gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
          Length = 938

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 372/905 (41%), Positives = 548/905 (60%), Gaps = 32/905 (3%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +      VKCA+ISG+
Sbjct: 30  IEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISGD 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
             G YHPHG + IY  L RMAQ+W++R +LI+ QGNFGS+ G PPAA RYTE RL   A 
Sbjct: 90  TSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRYTEARLSPVAS 149

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+DL  DTVDF P YD   QEP VL  R+PN+LVNG  GIAVGMAT+IP HNLGEV +
Sbjct: 150 MMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEVCE 209

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             V VID+P++ L  L EII+GPDFPTG  I GR GI+  Y  GR +IV+R  + IE+  
Sbjct: 210 ALVKVIDDPEVTLGELCEIIKGPDFPTGGTICGRAGIRRGYRDGRSTIVLRAKTRIEEHK 269

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGAS 319
            DR +I++TEIPYQ  +  ++EKIAELV E+RI  I+ + D SD ++   +VI++KR A 
Sbjct: 270 KDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIKRDAD 329

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LNQLY+++ LQ   S+ ++AL   KP   +L  +L+ F+  R  V+ RRT++LL+K
Sbjct: 330 PYVVLNQLYQFSPLQDSISIILLALVDGKPRELSLKELLEEFLRHRVTVIRRRTQFLLSK 389

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR R H + GL +A+AN+DE++RIIR S     A+  LM     A+ ++     + +  +
Sbjct: 390 ARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQ---RALGEEGF 446

Query: 440 TI-----GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +     G+  T  L+ VQ+ AIL + L +L  L ++ +  E   L  EI E L IL+  
Sbjct: 447 AMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLRILADE 506

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + +  +IK+EL+++  +    RRT I  E + D+  ED I  E MVV++SH GY+KR P 
Sbjct: 507 NIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMVVSISHRGYIKRTPA 566

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQRRGGKG  G    DED +  LF+ STH  +LFF++LG VY +KV+ LP  S ++
Sbjct: 567 STYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPELSRES 626

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+A++N+L+L++GE+I   +   + +   +  +++ AT+ G V+++ L D+ +  + G 
Sbjct: 627 RGRAIVNLLNLSEGEKIAECIAIRDFDQQGH--FLMMATRKGLVKKSPLEDYSRPKKGGI 684

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+KL   DE++ V      ++++L+T  G  +RF  S  R   GRN+ GV+GISLA GD
Sbjct: 685 IAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPM-GRNTSGVKGISLASGD 743

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT---SLKNDSSVEGNI----- 785
            ++ M +     AD D  +  +      +R   G   E+       +DS   G+I     
Sbjct: 744 SLVGMVV-----ADPDATLLTVCENGYGKRTNFGPNAEVVGPPPADDDSIDTGSIDTSSA 798

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             E                ++G  + +S   +R   R GKG+R  D+      G ++AV 
Sbjct: 799 EAETVVAEPPAPAEEAAAEDEGDEEGSSGSRYRTQRRGGKGLR--DIKTTTRNGTVIAVA 856

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D +++++++ +G L R+   EI+   R T+GV I S   D+++V+V R+      DE
Sbjct: 857 RVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRIMSLDDDDKLVAVVRVPR----DE 912

Query: 906 AESTE 910
           AE T+
Sbjct: 913 AEVTD 917


>gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 836

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 351/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERKAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                           TE+              
Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
          Length = 836

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 351/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERKAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                           TE+              
Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276]
 gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s]
 gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A
 gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768]
 gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222]
 gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301]
 gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 836

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 351/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                           TE+              
Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
 gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
          Length = 839

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 350/903 (38%), Positives = 529/903 (58%), Gaps = 99/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I +EM++SY+ YA++VI+GRAIPD+RDGLKPVHRR LF M +MG   +K Y K A
Sbjct: 15  VNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+A+IYD + +MAQ +S R++L++GQGNFGSVDGD PAA RYTE RL
Sbjct: 75  RVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVRL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  LL DL K+TV+F PN+D S QEP VL A+ PN+L+NG  GIAVG+AT +P HNL
Sbjct: 135 KREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV D     +++PD  +  LM+I+ GPDFPTG +I+G  GI+NAY +G+G + +RGV+ 
Sbjct: 195 GEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGTDGIQNAYLSGQGKLTVRGVAE 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++ SG R QI++TEIPYQVNKA ++E IAELV+EKRI  I+DLRDESD+ G R+VI+L+
Sbjct: 255 IDE-SGKRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVIDLR 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   +ILN LY++T+L+S F +   A+   +P+   LI +++ FV  R  V+ RR+++
Sbjct: 314 KDARPQLILNHLYKHTALESTFGIINYAIVDRQPKILGLIPLIEQFVRHRITVITRRSEF 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA +R H+L GL  A+ N+D V+  IR +   + A+  L+ +               
Sbjct: 374 DKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAK--------------- 418

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E Q  AIL+++L RL  L +  + +E   L  EI++ +++LSS  
Sbjct: 419 -----------FSLDEAQAGAILQMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSED 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +   I +EL  ++++    RRT+I   L ++  ED I  + ++V ++H  YVK + +  
Sbjct: 468 NIRAEISRELQELREKYADKRRTQITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDA 527

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG+G  G+ ++D D+V  +F+ +TH  +L F+S G  Y  +V+ +P GS Q++G
Sbjct: 528 YRVQGRGGRGVMGISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKG 587

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L L   ER+T ++P  E  S   + + +F T+ G + +    +F +   +G  A
Sbjct: 588 KAIVNLLDLRSEERVTAVIPVQEFSS---DRFFLFLTERGMIIKIPQDEFSRPRSTGVNA 644

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++ V       +I++TTK GQ +RF    I     RN++GV G+ +   D V
Sbjct: 645 ISLREGDNLVHVMVSDGSQEIIITTKYGQSLRFHEEQI-PLRHRNALGVIGMRMKDDDIV 703

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            SM ++              KH+                                     
Sbjct: 704 TSMTVIEEG-----------KHL------------------------------------- 715

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                LT++  G+GKRT+  ++R   R   G+R     K+     +V  F     ++IIL
Sbjct: 716 -----LTITSSGYGKRTNFDEYRGHGRGTMGVRNI---KLKRNDGIVTAFSAGPEEEIIL 767

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV------------ERIRESEIV 903
           +S +G +IR  V +I I  R+T+GV I   A  +RVV V            + I ++EI+
Sbjct: 768 MSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEEQKDISDDIPQAEII 827

Query: 904 DEA 906
           DE 
Sbjct: 828 DEG 830


>gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4]
 gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4]
          Length = 856

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 355/899 (39%), Positives = 545/899 (60%), Gaps = 92/899 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+ + K ARI 
Sbjct: 26  ISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSARIV 85

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDA+ RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 86  GDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 145

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   + D+ K+TVDFRPNYD +  EPVVL  R PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 146 AGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLGEL 205

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            +  + ++D+    +D LM+ ++GPDFPTG  +    G+ +AY TGRG++ +RG   IE+
Sbjct: 206 CNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEIEE 265

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                + IV+ EIPY +NK++++EKIA LV E+RI  +ADLRDESDR+G RVVI+LKRG 
Sbjct: 266 RKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKRGT 325

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L+S + +NM+A+   +P+   L   L  F+  R E+++RRT+Y L 
Sbjct: 326 IPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYDLR 385

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LMQR                  
Sbjct: 386 KAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------------ 427

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q++AIL++RL RLT L  + + +E   L  +I+    IL +   L 
Sbjct: 428 --------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLR 479

Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            ++++E   ++D   T RRT ++ + L  +  ED I  +D+V+T+S  GY+KR  L  Y+
Sbjct: 480 QVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQ 539

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKG +G+   D+DFV +    + H  +L F++ G +++ KV ++  GS  A+G  
Sbjct: 540 QQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVH 599

Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           + N+L L + E +TT++    F ED       + +F TK G V+R+  S + +  + G I
Sbjct: 600 IANLLPLEKDEWVTTVLSVREFAEDR------FFLFVTKRGMVKRSSASLYARARKGGLI 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     ++ ++LTT  G  +RF    +R   GR++ GV+G++L+  D+
Sbjct: 654 AVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDR 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++ A+                        + GD         D+S E            
Sbjct: 713 VVACAV------------------------LPGD---------DTSTE------------ 727

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                I+++S  G+GKRT    +R+ +R GKG++   V+   + G ++   PV D++ ++
Sbjct: 728 -----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALV 780

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE---AESTE 910
           L++    +IR+ V+E+R   RAT GV++    +   VV  +R+ E E+V+E   A+S+E
Sbjct: 781 LLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 839


>gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
 gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
          Length = 919

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 355/893 (39%), Positives = 540/893 (60%), Gaps = 90/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+  GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  IADLRDES+R G R
Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA+DR H+L GL IAV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+   +
Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDSMIEEMQNLAAEIERITN 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL++R  L+ +I  EL  +K++    RRT I + +   + DED I + D+V+T S  GYV
Sbjct: 523 ILANRDLLIELIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D ++ +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            + Q++G + INI   L +++GE++ +++    DE S ++ Y+  ATK G +++  LS+F
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAV--DEYS-DDKYLFTATKLGIIKKTSLSEF 699

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN +GK A  L   DE++       +  ILL     + V+F  +  R  + R + GV+
Sbjct: 700 QIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVK 758

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA+ +  IS +                                       SS EG  
Sbjct: 759 GITLAEDETCISAS---------------------------------------SSSEG-- 777

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + ILT+ + GFGK T    FR+ +R GKG+   +  K    G LV   
Sbjct: 778 ------------ELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDK---AGNLVFAR 822

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE ++
Sbjct: 823 FVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVK 875


>gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70]
 gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s]
 gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923]
 gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150]
 gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023]
          Length = 836

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 350/892 (39%), Positives = 528/892 (59%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL ++A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                           TE+              
Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae]
 gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae]
          Length = 919

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 356/893 (39%), Positives = 540/893 (60%), Gaps = 90/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  EIEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+G GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  IADLRDES+R G R
Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA DR H+L GL IAV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSAR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+   +
Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDGMIEEMQNLAAEIERITN 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL++R  L+ +I  EL  +K++    RRT I + +   + DED I + D+V+T S  GYV
Sbjct: 523 ILANRDLLIDLIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D ++ +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            + Q++G + INI   L +++GE++ +++    DE S ++ Y+  ATK G +++  LS+F
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAV--DEYS-DDKYLFTATKLGIIKKTSLSEF 699

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN +GK A  L   DE++       +  ILL     + V+F  +  R  + R + GV+
Sbjct: 700 QIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVK 758

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA+ +  IS +                                       SS EG  
Sbjct: 759 GITLAEDETCISAS---------------------------------------SSSEG-- 777

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + ILT+ + GFGK T    FR+ +R GKG+   +  K    G LV   
Sbjct: 778 ------------ELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDK---AGNLVFAR 822

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE ++
Sbjct: 823 FVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVK 875


>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
 gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
          Length = 899

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 358/923 (38%), Positives = 550/923 (59%), Gaps = 101/923 (10%)

Query: 3   EHIISSDEEEEK-----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           E +   D+EE K           G++ V + +EM+NS+L YA++VI+ RA+PD RDGLKP
Sbjct: 47  EEVAPQDKEEYKVQSQLILESFEGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKP 106

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRRIL+ M+++G+ ++ ++ K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L+
Sbjct: 107 VHRRILYDMLELGITYSSQHRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLV 166

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +G GNFGS+DGD  AA RYTE R+ K A  +LD + KDTVDF  NYD S  EPVVL +R+
Sbjct: 167 DGHGNFGSIDGDSAAAMRYTEARMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRF 226

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           PN+LV+G  GIAVGMAT IP HNL E ++  +A   N +I  + LM  I+GPDFPTGA I
Sbjct: 227 PNLLVSGATGIAVGMATEIPPHNLSETINATIAFARNNEITTEELMIHIKGPDFPTGATI 286

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           LG  GI + Y TG+G I +R  + IE+ +  + +I+VTEIPY V K  ++EKI EL ++K
Sbjct: 287 LGVKGILDMYETGKGKIPVRSKTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDK 346

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
            +  I +LRDES+R+G R+VI++K+G +  V+LN+L++ + LQ+  + N+VAL   +P+ 
Sbjct: 347 VVEGIGELRDESNREGIRIVIDVKKGFNPHVLLNKLFQKSYLQTNVNANLVALVNGEPKL 406

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  IL  ++  + EVV RR K+ L KA D+ H+L GL IAV N+DEVV+II+ S N  
Sbjct: 407 LNLKQILNIYLNHQIEVVTRRLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDA 466

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A+  L  R +N                         L+E QT+AIL++ L RLTGL  +
Sbjct: 467 IAQERLGTR-FN-------------------------LTEKQTKAILDMSLRRLTGLNIE 500

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDE 530
            +  E++ L  EI     IL SR +L+ +I  EL  +K++    RRT I E  +  + DE
Sbjct: 501 KMNQEIDELNKEISYIRSILESREKLIDLIVDELEIIKEKYGDKRRTEIDESAISSISDE 560

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I    +V+T S  GYVKR+ L  Y  Q RGG G + +    +D ++ +   +THT ++
Sbjct: 561 DLIPVNTIVITTSVKGYVKRMKLDDYNVQNRGGIGVNTMKTYADDDISTILQTTTHTDLM 620

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLN--QGERITTIMPFPEDESSWNNLY 647
            F++LG VY+ +  ++P GS Q++G   INI+ SLN  +GE++ +++     E+  +  Y
Sbjct: 621 LFTNLGRVYRIRAHQIPEGSKQSKGTPFINIIPSLNEKEGEKVVSLLAV---ETYSDEQY 677

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  T++G +++ ++S +  I  +GK A KL   D +++       N+IL+ +     V+
Sbjct: 678 LVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAFIVEDGNEILIASNGKNVVK 737

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR+S GVRGI+LA+G +V++      A +D D                 G
Sbjct: 738 FSSNDLRPL-GRSSFGVRGITLAEGKKVLT------ASSDKD-----------------G 773

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D                              FIL++  KGFGK T S +FR+  R GKG+
Sbjct: 774 D------------------------------FILSIGTKGFGKLTPSEEFRLIKRGGKGV 803

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A +  K    G L+    V  ND+ ++++  GT IR+ +++I + SRATKGV I +   
Sbjct: 804 TAINADK---AGDLIFAKFVKPNDEALIITAAGTTIRILISQISVTSRATKGVKIINLRD 860

Query: 888 DERVVSVERIRESEIVDEAESTE 910
           ++ +++VE ++  + +++A + E
Sbjct: 861 NDEIIAVEIVKNEQELEKALTQE 883


>gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
 gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
          Length = 828

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 347/875 (39%), Positives = 528/875 (60%), Gaps = 87/875 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT   ++ E++  +L Y+++VI+ RA+PD+RDGLKPV RRILF M +M    +K Y KCA
Sbjct: 19  ITETELSKEIRRDFLEYSMSVIVARALPDVRDGLKPVQRRILFAMNEMNNGPDKPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+W++R  L++G GNFGS+DGD  AA RYTE R+
Sbjct: 79  RIVGDTMGKYHPHGDSSIYGALVYMAQNWNMRETLVDGHGNFGSMDGDGAAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L DL KDTVD   NYDG  +EP+VL AR+PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 SKISVEILRDLEKDTVDMMDNYDGEEKEPMVLPARFPNLLVNGSSGIAVGMATNVAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E +D  +A ++NP+I +  LM+ ++GPDFPTG  ILGR+GI+ A+ TGRGSIV+R  +H
Sbjct: 199 KETIDAVIAYMENPEISVTELMQFMKGPDFPTGGYILGRSGIRKAFETGRGSIVMRAKTH 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+ +  + +IVV EIPY VNKA+++E+I  L REK I  I DLRDES+ +G RVV+EL+
Sbjct: 259 FEEMANGKMRIVVDEIPYMVNKASLVERIGTLTREKLIDGITDLRDESNMKGIRVVVELR 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   A+V+LNQLYR T+LQS F VN V L    P    +  +LK ++ F+ EV+ RRT +
Sbjct: 319 KDVQAEVVLNQLYRMTALQSNFGVNNVVLFDGAPRLAGMKELLKGYIDFQLEVIRRRTAF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DRAH+L GL IAV  LDEV+  IR S + + A   LM +               
Sbjct: 379 ELKKAKDRAHILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNK--------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q +AIL+++  RLTGL RD I NE   L ++I +  DIL+ + 
Sbjct: 424 -----------FPLDEIQAKAILDMQFRRLTGLERDKIENEYQDLLLKIADYEDILAHKE 472

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K EL  +K +  +PRR+ I++   +MEDED I  ED++VT+S  GYVKR+  + 
Sbjct: 473 RVIDIVKNELTEIKAKYGSPRRSEIIDADAEMEDEDLIPVEDIMVTLSTNGYVKRLTTNT 532

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG  G+ +  +D +  +  +STH  +L F++ G V++ + + +P  S  ++G
Sbjct: 533 YSVQNRGGKGIKGMDLNKDDSIESVINMSTHDFLLLFTNKGRVFRLRGFNIPNFSRTSKG 592

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             +IN++++++ E++  ++P  +++     L+  F TK G V+R  +S+F  I ++GK A
Sbjct: 593 IPIINLVNMDKDEKVKAMVPVKKNDEQTKFLF--FVTKKGIVKRTAISEFENIMKNGKKA 650

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D++  V+    + ++L+    G+ VR     +R   GR++ GV+G +   G  V
Sbjct: 651 ILLNEDDQLAFVKPTDGQAEVLIAGANGKAVRILEDKVRP-QGRSAHGVKGFN-TDGSSV 708

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + +A  L                                             E    L +
Sbjct: 709 VGVATTL---------------------------------------------EGFNVLTV 723

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854
            E+ I  VS        S   FR++NR  KG++A   +KINE  G L+++  V+D+  ++
Sbjct: 724 TEKGIGKVS--------SIASFRLTNRGSKGVKA---AKINEKTGDLISMKAVSDDQDVM 772

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++++ G +IR+ +++I  +SR++ GV +    +D+
Sbjct: 773 IMTEGGIVIRISLDQIAESSRSSMGVHLIRVDQDK 807



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T+S  G+ KR ++  + + NR GKGI+  D++K + I    +V  ++ +D ++L 
Sbjct: 513 EDIMVTLSTNGYVKRLTTNTYSVQNRGGKGIKGMDLNKDDSIE---SVINMSTHDFLLLF 569

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTA---KDERVVSVERIRESE 901
           ++KG + R+    I   SR +KG+ I +     KDE+V ++  +++++
Sbjct: 570 TNKGRVFRLRGFNIPNFSRTSKGIPIINLVNMDKDEKVKAMVPVKKND 617


>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
 gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
          Length = 876

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 360/902 (39%), Positives = 534/902 (59%), Gaps = 63/902 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 19  IIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q      LL+D+  +TVD+  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 139 QALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG +A+I+NP+I    LM +I GPDFPTG  ILGRTGI+  Y +GRGS+ +RGV+
Sbjct: 199 LNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQILGRTGIRETYLSGRGSVTMRGVA 258

Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            +E        DR+ +++T +PYQ NKAA++E+IAE+V +K++  I+D+RDESDR G R+
Sbjct: 259 EVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRIETIE 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L  R          
Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHG-------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS VQ  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 431 ------------------LSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+LGII++EL  +++    PRRT I++    +ED D I  E  VV ++  GY+KR
Sbjct: 473 LGRRERVLGIIQEELGQLRERHSVPRRTEILDLAGGLEDIDLIANERSVVLLTETGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  S
Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E IT+++   E     + L +   T+ G ++R +LS F  I  
Sbjct: 593 RTAKGTPVVQLLPIPREEAITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ +K G  + F ++   +R   GR + GVR ++
Sbjct: 650 NGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLADGELRPL-GRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L KGD ++SM ++    AD          ++A    +    +     +   + EG     
Sbjct: 709 LRKGDSLVSMDVLPAELAD---------QIAASADDVGDGDDAGDVAETAVAAEG----- 754

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA       +   LV +  + 
Sbjct: 755 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVGLRVLG 803

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
             ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +  E+E  D+ E
Sbjct: 804 AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAETDDDNE 863

Query: 908 ST 909
           ++
Sbjct: 864 AS 865


>gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
 gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
          Length = 809

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 371/893 (41%), Positives = 532/893 (59%), Gaps = 94/893 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+Q G+  N+K+ K 
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+A+IYDA+ R+ Q W++R  L++ QGNFGS+DGDPPAA RYTE R
Sbjct: 63  AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L DL K+TV  +PNYD +  EP VL +  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID PDI LD +M  + GPDFPTG  I  R GI+ AYATG   + +RG +
Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRI-SRQGIREAYATGHAGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            I++ +G R QIV+TEIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  R+V+E
Sbjct: 242 RIDEKNG-RAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           LKRGA   ++LNQLY+YT LQS F+V N+  +NG +P    LI  ++AF+  R +VV RR
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVMNLSIVNG-EPRVLPLIDTMRAFLDHRRDVVTRR 359

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA +RAH+L GL  A+ ++DEV+  IR S     AR  LMQR            
Sbjct: 360 TQYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQR------------ 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q +AIL++RL RL GL R+ +  E + L   I     IL 
Sbjct: 408 --------------FTLTEIQAQAILDMRLQRLVGLEREKLVAEYDELQKVIARLRSILG 453

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               L   IK+E+  ++D     RR+ I +   D+  ED I  EDMV+T++  GY+KR  
Sbjct: 454 DERLLWREIKKEIRDIRDRYGDERRSTITDLEDDISKEDLIAVEDMVITMTKAGYLKRTK 513

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP     
Sbjct: 514 LDAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRD 573

Query: 613 ARGKALINIL-SLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           A+G  + N++ +L + E I +++    F E  S       VFATK G V++  ++++  I
Sbjct: 574 AKGTHIRNLIPALREDENIASVLSVKGFNEPGS------FVFATKRGMVKKTLITEYGNI 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V+     +D++L TK GQ +RF  + +R   GR + GV GI 
Sbjct: 628 TSAGLIAINLQPGDELIGVDIQRDGDDVVLATKEGQAMRFAATEVR-DTGRATQGVIGIR 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+V+SMA+V                                            S E
Sbjct: 687 LREGDEVVSMALV-------------------------------------------PSGE 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              EL       L +SE G GKRT   D+    R G G+   DV+  ++ G LVA+  V 
Sbjct: 704 ESSEL-------LAISECGLGKRTPVSDYPSKGRGGLGVITLDVT--DKTGKLVALTHVA 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            N++++++++KGT+IR  V E+R+  R  +GV + +  + +RV+S   IR  +
Sbjct: 755 GNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINLGEKDRVISAFPIRRED 807


>gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551]
 gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551]
          Length = 861

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 369/903 (40%), Positives = 530/903 (58%), Gaps = 87/903 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I  EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV     + K +
Sbjct: 19  VQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMNEAGVSARSSHRKSS 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MG YHPHG++AIYDALARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 79  SIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+D+ KDTVDF+ NYD   QEPVVL + +PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 139 APIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D    +I+NPD  ++ LME ++GPDFPTGA I+G+  +  AY TGRG I +R    
Sbjct: 199 GEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIVGKNAVHKAYKTGRGRIRVRAEFE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +++   D + IV+TE+PYQ NKA ++E+IA+ V + +I  I DLRDESDR G RVV+ELK
Sbjct: 259 VDE---DGDNIVITELPYQENKARLIERIADDVNDGKIEGIRDLRDESDRDGIRVVVELK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+ NQL  +  L+S F V  +AL   +P   TL   LK ++  R EVV RR++Y
Sbjct: 316 RGANPDVVKNQLLEH-HLESTFGVINLALVDGQPRVLTLKETLKEYLDHRREVVRRRSEY 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L                  
Sbjct: 375 ELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAALR----------------- 417

Query: 436 DSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
               T+  DG    T   SE Q   I+ ++L  LT +   +I++E   +   I    +IL
Sbjct: 418 -GEMTVEVDGEPLPTFDFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNEIL 476

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   L  +IK EL ++KDE D  RRT  +E    +  ED I  ED+VV V+   Y+KR+
Sbjct: 477 NNPDELDAVIKSELTAIKDEYDDERRTSFIEDTGTVTHEDLIAEEDVVVVVTEDDYIKRM 536

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  +RAQ RGGKG  G  +++ D V+ +F+ STH  +L+F++ G VYK K +++P  S 
Sbjct: 537 PLDTFRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEMSR 596

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ARGK+ +N+L L+ GE IT ++     EDE+   + Y+  AT++G V+R  +  F  I 
Sbjct: 597 TARGKSAVNLLELDDGEEITAVVNTADIEDET---DKYLTMATQNGYVKRTSVEKFQNIL 653

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA KLD  DE+  VE     +D++L ++ G  +RF  S +R   GR++ GVRG+ L
Sbjct: 654 TTGIIATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAM-GRSARGVRGMKL 712

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+++ +A V   D D                                          
Sbjct: 713 EGDDELVGVAAV---DED------------------------------------------ 727

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +  ++LTV++ G+GKR+    +R  +R+GKG+   D+   +  G + A+  V  
Sbjct: 728 ------RHNWVLTVTQNGYGKRSDIERYRRQSRNGKGL--IDIKTNDRNGPVCAMETVGY 779

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE--RIRESEIVDEAE 907
            D + ++S+ G ++R PV +I    R T GV +    + + V SV+   +   E+ +EA 
Sbjct: 780 GDHLFVMSESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVYNVGSDEVDEEAS 839

Query: 908 STE 910
             E
Sbjct: 840 DEE 842


>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 865

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 347/877 (39%), Positives = 534/877 (60%), Gaps = 66/877 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + 
Sbjct: 14  EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G  ++I NP I+   L EII+GPDFPTG  ILGR GI+  + TG+GSI 
Sbjct: 194 IPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRDGIRETFKTGKGSIT 253

Query: 250 IRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE  K++G  +++ +++TE+P+Q NKAA++E+IA+LV EK++  I+D+RDESDR
Sbjct: 254 MRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F+ FR
Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGEPTTLSLRKMLDVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +AR +L        
Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEH---- 429

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS +Q+ AIL+++L RLT L  D I+ E N L  +I 
Sbjct: 430 ----------------------KLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKIN 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL+S+ R+  II +EL  +  +  +PR+T I++    ++D D I  +  VV ++  
Sbjct: 468 FYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + +  RG +G++G   +++D V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+ S  A+G   + +L + + E+IT+++     +S  ++ Y++  TK G ++R  LS F
Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFVDDRYLLMLTKAGFIKRTALSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V    + + +L+ +K G  + F   I+ +R   GR + G
Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ ++L +GD ++SM ++               ++  Q   I   TE++     D +VE 
Sbjct: 704 VKSMNLREGDNLVSMDVL-------------TSNLVDQLAKIEDLTEDL-----DDNVEE 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N S+           ++L  S  G GKR     FR+  R+G G+RA      ++   LV 
Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD--QLVC 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  + + ++++LV++KG ++R   ++I   SRA  GV
Sbjct: 795 LKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGV 831


>gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 816

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 333/862 (38%), Positives = 517/862 (59%), Gaps = 86/862 (9%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           ++P    ILFGMM +G   +K Y K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R 
Sbjct: 1   MEPKGFEILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++++GQGN+GSVDGD  AA RYTECRL+K    ++ DL K+TVD + N+D S QEP V+ 
Sbjct: 61  MVVDGQGNYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
            R PN+LVNG  GIAVGMATN+PTHNL EV+D C+A I+N DI+++ LM  ++ PDFPTG
Sbjct: 121 TRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTG 180

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             I G +G++ AY TGRG +++R  + IE TS   ++IV+TEIPY VNKA +++ IA+L 
Sbjct: 181 GYIYGMSGVREAYLTGRGRVIMRARAEIE-TSSTHDKIVITEIPYGVNKAELIKNIADLA 239

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            +K+I  I++  DESDR+G R+VI++KR A+A V+LN+LY+ T LQ+ FSVN VAL   +
Sbjct: 240 NDKKIEGISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGR 299

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P    L  ++K FV  R EVV+RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR + 
Sbjct: 300 PRLLNLKDMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAK 359

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P  A   L++R                            L+E+Q+RAI+E+RL +LTGL
Sbjct: 360 TPNDAIVGLIER--------------------------FQLTEIQSRAIVEMRLRQLTGL 393

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +D +  E   +   I    +ILS+      +I  EL+ VK +    RR+ IV    +  
Sbjct: 394 MQDQLHAEYEEVMKMIAYYEEILSNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFN 453

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED    ++M++T+SH+GY+KR PLS +RAQ RGG G  G   RD DF+  ++  + H +
Sbjct: 454 PEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNT 513

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNL 646
           ++FF+  G  Y  KV+ +P G+  ++G+A+ N+L+++  + +   +      D    N+ 
Sbjct: 514 MMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSH 573

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           YV+F TK+G +++  L  + +  ++G  A+ +   D ++ V     +N+I++  + G+ +
Sbjct: 574 YVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAI 633

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  SA+RV  GR + GVRG++L +   D+V+ M  +   +A                  
Sbjct: 634 RFHESAVRVM-GRTATGVRGMTLDEDGQDEVVGMICIKDPEA------------------ 674

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                            + I+ VSE+G+GKR+   D+R +NR G
Sbjct: 675 ---------------------------------ETIMVVSEQGYGKRSDIEDYRKTNRGG 701

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG++  +++  ++ G LV +  V D++ +++++  G  IR+ V ++RI  RAT+GV + +
Sbjct: 702 KGVKTMNIT--DKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLIN 759

Query: 885 TAK-DERVVSVERIRESEIVDE 905
             K ++ + SV ++    + DE
Sbjct: 760 LEKRNDEIGSVCKVTSESMEDE 781


>gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074]
          Length = 836

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 350/892 (39%), Positives = 526/892 (58%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+I EL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                           TE+              
Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
 gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
          Length = 824

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 347/879 (39%), Positives = 516/879 (58%), Gaps = 82/879 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +V + +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV     + K +
Sbjct: 16  VKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHESGVTSGSGHRKSS 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I G+ MG YHPHG++ IYDAL RMAQD+S+R  L++GQGNFGSVDGDP AA RYTE R+
Sbjct: 76  NIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTV F+ NYD    EP VL + +PN+LVNG  GIAVGM+TN+P HNL
Sbjct: 136 APIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSSGIAVGMSTNVPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +ID PD  +  LME ++GPDFPT A I+GR  +K AY TGRG + +R   H
Sbjct: 196 GEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIVGRADVKQAYQTGRGRVRMRAEYH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E ++G R+ IV+TE+PYQ NK+ ++E+IA+ VR+ ++  I DLRDESDR G R+VI+LK
Sbjct: 256 VE-SNGRRDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLRDESDRNGVRIVIDLK 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ DV+ N+L   + L+  FSV  +AL   +P+  TL  +L  +V+ R+EVV RR+++
Sbjct: 315 QKANTDVVENRLLE-SHLEKTFSVINLALVDGEPKVLTLKELLAEYVSHRKEVVRRRSEH 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A DRAH+L G   A+ N DEVV +I+ + + + A +E ++ +++            
Sbjct: 374 DLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAA-KETLKSAFD------------ 420

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         S+ Q   I+ ++L  LT +   DI +E   +   I+   +IL S  
Sbjct: 421 -------------FSQDQADHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQ 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LL +IK EL  +K +    RRT  +E    + DED I  ED VV +S   Y+KRVP   
Sbjct: 468 ELLDVIKDELREIKTQYADERRTSFIEDTGTVADEDLIPEEDTVVVLSEGDYIKRVPAET 527

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + AQ RGGKG  G  ++D D V+ +F  STH  +L F+  G VY+ KV+++P  S  ARG
Sbjct: 528 FDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARG 587

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            + +NIL L+ GE I+ ++   + +   ++ Y+  AT++G V+R  + +F  I  +G IA
Sbjct: 588 TSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRTSVGEFGNILSTGIIA 647

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  D +  VE     +D++L ++ G  +RF    +R   GRN+ GVRG+ L   D++
Sbjct: 648 IDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAM-GRNARGVRGMDLDAADRI 706

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
             +A V   D                                                  
Sbjct: 707 AGVAAVESED-------------------------------------------------- 716

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            ++ +LTV+E G+GKRT   ++R  +R+GKG+   D+   +  G +V+V  V D+D +++
Sbjct: 717 -DRSLLTVTEFGYGKRTRVGEYRSQSRNGKGL--VDIKTGDRNGDVVSVDAVGDDDSLVV 773

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +S  G +I++PV+EI    R TKGV I +    + V  V
Sbjct: 774 MSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGV 812


>gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
 gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
          Length = 823

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 374/909 (41%), Positives = 527/909 (57%), Gaps = 97/909 (10%)

Query: 6   ISSDEEEEKGITS-------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           +SSD  E  G+T+       V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+
Sbjct: 1   MSSDVPEGPGVTADAARVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M +MGV     + K + + GEVMG YHPHG++AIYD L RMAQD+S+R  L++GQGNFG
Sbjct: 61  AMHEMGVSSGSSHRKSSSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGDP AA RYTE R+   A  LL D+ KDTVDF+ NYD   +EP VL + +PN+LVNG
Sbjct: 121 SMDGDPAAAMRYTEARMAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+TNIP HNLGEV+D  + +IDNPD ++  LME ++GPDFPTGA I+G+  I 
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIVGKNAIH 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AYATGRG + +R     E+T   R +IV+TEIP+Q NKA M+E+IA+ V E  I  ++D
Sbjct: 241 AAYATGRGRLTVRAEYEFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G RVVIE KRGA+ DV+ NQL  +  L+S F V  +AL   +P   TL   L
Sbjct: 301 LRDESDRDGVRVVIECKRGANVDVVENQLLDH-HLESTFGVINLALVDGEPRVLTLKETL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +VA R+EVV RR+++ L +A DRAH+L G   A+ N+D VV +IR S + + A+  L 
Sbjct: 360 EEYVAHRKEVVRRRSEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALE 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                          T   S  Q + I+ ++L  LT +   ++ +E  
Sbjct: 420 E--------------------------TFDFSTEQAQHIVRMQLGSLTSMEAAEVEDEYE 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  EI+    IL+  S LL +IK EL +VKDE D  RRT IVE    +  ED I  E+ 
Sbjct: 454 EVEAEIERLETILNDESELLDVIKDELRAVKDEYDDDRRTSIVEDDGTVTREDLIPEEEC 513

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V V+   Y+KR+P   + AQ RGGKG  G   ++ D V+ +F  +TH  +L F++ G V
Sbjct: 514 LVVVTEDDYIKRMPADRFDAQHRGGKGIIGADPKEGDRVSTVFRANTHDYLLAFTNHGQV 573

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655
           Y+ + + +P  S  ARGK+ +N+++ + GE IT ++    F +DE       +  AT+ G
Sbjct: 574 YRLRTYEIPEMSRTARGKSAVNLINFDDGEEITAVVSMDEFDDDEC------ITMATRQG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R   S+F  I  +G IA KL+  DE++       E+D+++ T+ G  +RF  +  R 
Sbjct: 628 YVKRTCCSEFENILSTGIIAAKLEDGDELVDAVVTDGESDLVIATEDGMTIRFDETEARQ 687

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI L  GD V  +     A  ++DER                        
Sbjct: 688 M-GRTARGVRGIDLRDGDNVAGVV----ATDEHDERA----------------------- 719

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +LTV+E+G+GKRT   ++R  +R GKG+   D+   
Sbjct: 720 ------------------------LLTVTERGYGKRTPLSEYRTQSRYGKGL--IDIKTG 753

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +  G + AV  V ++D +I++S  G ++R PV ++    R T GV I   A D+ V SV+
Sbjct: 754 DRNGGVTAVNAVAEDDHVIVMSATGQIMRCPVEDVSTVGRNTMGVTIMDVAADDTVASVD 813

Query: 896 RIRESEIVD 904
            I  + I D
Sbjct: 814 VIPGTAIED 822


>gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 839

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 362/914 (39%), Positives = 524/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN + D    L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       + LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  +  +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++      S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V++ KL+DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D                    Y+  ++  R          
Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                    EG               ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLL 814

Query: 893 SVERIRESEIVDEA 906
           ++ R  E E  DEA
Sbjct: 815 AIARNAE-EAADEA 827


>gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1]
 gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 836

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 349/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRT+I     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                           TE+              
Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810


>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
 gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 865

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 344/877 (39%), Positives = 531/877 (60%), Gaps = 66/877 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + 
Sbjct: 14  EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G  ++I NP I+   L EII+GPDFPTG  ILGR GI+  + TG+GSI 
Sbjct: 194 IPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREGIRETFKTGKGSIT 253

Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK++  I+D+RDESDR
Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR +   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F+ FR
Sbjct: 314 DGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +AR +L        
Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEH---- 429

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS +Q+ AIL+++L RLT L  D I+ E N L  +I 
Sbjct: 430 ----------------------KLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKIN 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL+S+ R+  II +EL  +  +  +PR+T I++    ++D D I  +  VV ++  
Sbjct: 468 LYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + +  RG +G++G   +++D V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+ S  A+G   + +L + + E+IT+++     +S  ++ Y++  TK G ++R  LS F
Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFVDDRYLLMLTKAGFIKRTALSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V    + + +L+ +K G  + F   I+ +R   GR + G
Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ ++L +GD ++SM ++               ++  Q   I   TE++     D +VE 
Sbjct: 704 VKSMNLREGDNLVSMDVL-------------TSNLVDQLAKIEDLTEDL-----DDNVEE 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N S+           ++L  S  G GKR     FR+  R+G G+RA      ++   LV 
Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD--QLVC 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  + + ++++LV++KG ++R   ++I   SRA  GV
Sbjct: 795 LKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGV 831


>gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
 gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
          Length = 837

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 359/884 (40%), Positives = 522/884 (59%), Gaps = 92/884 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ S++ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M ++G+   + Y K A + G+
Sbjct: 15  IDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYKKSATVVGD 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++++YDAL RM Q +SLR  L++GQGNFGS+DGD  AA RYTE RL + A 
Sbjct: 75  VLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTEARLTRMAV 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ K+TVDF PN+D   +EP VL A +PN+LVNG  GIAVGMATNIP HNL EV+ 
Sbjct: 135 EMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPPHNLREVIS 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI-EKT 259
             +A+IDNP++D  AL ++++GPDFPTG  I GR GI +   TGRG I++R  + I EK 
Sbjct: 195 AVIALIDNPELDGPALRKLVKGPDFPTGGYIYGRAGIADYQDTGRGRIIMRARAVIEEKE 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           S  + QIVVTE+PYQVNKA ++  IAELVR++++  I+ LRDESD+ G RVVIELKR A 
Sbjct: 255 SSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVVIELKRDAI 314

Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFREEVVVRRT 373
             V+LNQLY++T++QS F V M+AL          P+  TL   L+ ++A R EV+VRRT
Sbjct: 315 PRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHRHEVIVRRT 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KA +R H+L GL IAV N+DEV+ +IR + +  TA  +L  R             
Sbjct: 375 QFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSR------------- 421

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AIL +RLA+LTGL RD +  EL  +   I E   IL S
Sbjct: 422 -------------FGLSERQAEAILNMRLAKLTGLERDKLEEELVEVRAFILEMRGILES 468

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R + I+K EL+ V +     RRT IV    +   ED I  E+MVVT++H GY+KR PL
Sbjct: 469 RDRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEEEMVVTITHGGYIKRTPL 528

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S+Y  Q RGG+G++   +++ DF+   ++ STHT +L F+  G  +  KV  LP      
Sbjct: 529 SLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLKVHELPQAGRNT 588

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK ++N++++    RI  I+   E   +    +++F T++G V++  LS +     +G 
Sbjct: 589 RGKPIVNLINVTPDTRIRAIVVTKEFSDTE---FLLFCTRNGTVKKTALSQYSNPRANGI 645

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+K++  DE++ V+  +  ND++L T+ G  VRF  S +R   GR++ GV+GI L   D
Sbjct: 646 KAIKIEQDDELMDVQVTSGNNDVVLATRHGLSVRFHESDVREM-GRDTTGVKGIELRPSD 704

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           Q++ M ++                             E T L       G  SE      
Sbjct: 705 QLVGMVVI---------------------------KREATLLVVTERGLGKCSE------ 731

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                    VSE    KR            GKGI    +++  + G ++A+  V   D++
Sbjct: 732 ---------VSEYRVQKR-----------GGKGI--LTLNRTVKTGDVIALMEVVPEDEL 769

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L++ +G  IR  V+EIR+  RA +GV + +    + V +V R+
Sbjct: 770 MLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDGVSAVARV 813



 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 749 DERICYMKHMSAQRRLISGDTE--EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D R+  +K    Q     GD    EI S + + S+E  I+EE         + ++T++  
Sbjct: 470 DRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEE---------EMVVTITHG 520

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+ KRT      + NR G+G R    + + E   +   +  + +  +++ +D G    + 
Sbjct: 521 GYIKRTP---LSLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLK 577

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           V+E+  A R T+G  I +      V    RIR   +  E   TE
Sbjct: 578 VHELPQAGRNTRGKPIVNLIN---VTPDTRIRAIVVTKEFSDTE 618


>gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A
 gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 903

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 354/911 (38%), Positives = 518/911 (56%), Gaps = 137/911 (15%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M ++GV  NK  VK ARI G+
Sbjct: 15  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD LARMAQD+SLR  L+ GQGNFGS+DGD PAA RYTE ++     
Sbjct: 75  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+DL K+TVD  PNYD S +EP+VL +  PN++VNG  GIAVGMATN+  HNL EV  
Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A+ +NPD+  + LME ++GPDFPTGA++ GR+GI+ AY TG G + +R  + IE  +
Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 254

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + +I+VTEIPY VNKA + +KIA+LVR+KRI  I D+RDES R   R+VIEL+R A  
Sbjct: 255 KGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAVG 313

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +V+LN L++YT LQ+ FS+  +AL    P+  TL  +L+ ++  R +V+ R T++ L KA
Sbjct: 314 EVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 373

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL IA  N+DEVV+IIR S   E A++ L  R                    
Sbjct: 374 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR-------------------- 413

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L E+Q++AI+++RLA+L GL  + +  E N L   + +  DIL  R R + I
Sbjct: 414 ------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAI 467

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           + Q+L +V D+    RRT I E + D +DED I  E+ V+T+S  GY++R+P+  ++AQ 
Sbjct: 468 MLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQN 527

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG  G  ++DED V  +F  STH+ +L F++ G VY  KV+RLP G+   +G+ ++N
Sbjct: 528 RGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVN 587

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            ++L +GE++  I+P            +VFATK G + +  L+ F +  ++G  A+ LD 
Sbjct: 588 FVALTEGEKVQAIVPV---RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDE 644

Query: 681 RDEILSV----------ETCTQEND----------------------------------- 695
            DE++ V          E     +D                                   
Sbjct: 645 DDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANR 704

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                 +++ TK GQ V FPIS  R   GR + GV+GI+L                A+ D
Sbjct: 705 PIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITL----------------AEGD 747

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           E I  +   +  +                                     ILT++EKG+G
Sbjct: 748 EVISLLWLKAGNK-------------------------------------ILTITEKGYG 770

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KR+    +R++ R  KG+R  +V+  ++IGA V V  V D+  +I+ S  G +IR+   +
Sbjct: 771 KRSEPGSYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAAD 828

Query: 870 IRIASRATKGV 880
           IR+  R  +GV
Sbjct: 829 IRLTGRNAQGV 839


>gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
 gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
          Length = 859

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 346/899 (38%), Positives = 526/899 (58%), Gaps = 90/899 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S ++++   +T   I   + ++YL Y+++V +GRAIPD+RDGLKP  RR+LF M ++ +
Sbjct: 1   MSDNQQDFSTVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y+KCAR+ G+V+GKYHPHG+ ++YD + RMAQD+S+R +LI+GQGNFGS+DGD  
Sbjct: 61  RKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+++ A  LL DL K+TVD +P +DGS  EP VL ARYPN+LVNG  GI VG
Sbjct: 121 AAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT+IP HNLGEV++  VA++D P I ++ +M+ + GPDFPT  + +G  GI+  Y TGR
Sbjct: 181 MATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           G + +RG + I + +G REQIV+TEIPY VNK  M++KIAELV  K I  I+ L DE S 
Sbjct: 241 GGVHLRGRAEIIEKNG-REQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSS 299

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G RVV+ +K  A A V++NQLY++T L        + ++  +P+   L  +L+A++  
Sbjct: 300 RVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLDH 359

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EV+ RR K+ L KA  RAH+L GL  AV ++DEV++IIR S N E A  +L +R    
Sbjct: 360 RLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKER---- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS  Q +AIL++RL++LTGL  D++  E   L   I
Sbjct: 416 ----------------------FELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRI 453

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               ++L++R   L ++K+EL+ V+D+    RRT +  G  D+  ED I R    +T+S+
Sbjct: 454 AHYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIARASATITISN 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KRVP  +YR Q RGGKG  G+  +D+DFV  L    TH  ++FF++ G ++  KV+
Sbjct: 514 EGYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVY 573

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  +  ++GKA++N+L   +GE +  ++    D+    + +++ +T++G V++  L+ 
Sbjct: 574 DIPEATRVSKGKAMVNLLEFEKGEYVRAMISV--DKVDDEDRFIMMSTRNGVVKKTALAA 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    A+ LD  D+++  +       I+L+T+ G    F  S  R   GR + G 
Sbjct: 632 FKNMRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRT-QGRVTRGC 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L++ DQV++M+IV                          ++E+I            
Sbjct: 691 RGIRLSESDQVVAMSIV-------------------------EESEDI------------ 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                           L V+ KG GKR+   D+R++ R  KG+R     K+ E   +V V
Sbjct: 714 ----------------LVVTAKGMGKRSCVDDYRLTKRGAKGVRNI---KLKEGDYVVEV 754

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI--FSTAKDERVVSVERIRESE 901
             + D D+II+ + +G ++R+    IR   RA++GV I  F  A D  ++S  R+ E E
Sbjct: 755 MMIEDTDEIIMTTMEGLMVRISAEPIRSLGRASQGVTIMKFKKASD-LIISASRVVEVE 812


>gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 343/872 (39%), Positives = 524/872 (60%), Gaps = 91/872 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K ARI GE
Sbjct: 10  VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+A +YDAL RMA  +++R  LIEGQGNFGS+D DPPAA RYTE RL + A 
Sbjct: 70  VMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TV+   N+DG+ +E  VL ++ PN+++NG  GIAVGMATNIP HNL E VD
Sbjct: 130 EMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H+E   
Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247

Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           G R ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ + A+
Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDAN 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +Y   
Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +   RAHV+ GL  A   +  VV I+R S + E+AR+ LM+                   
Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL    ++ 
Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+K+E L +K +   PRRT + +  ++  +E+ IV ED+V+T+SH GY+K  PL+ YR+
Sbjct: 462 EIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRS 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +   + ++D V  + +    +S LF ++LG  Y  K ++L       RG+ +
Sbjct: 522 QKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677
              L+L   E+I  +        +     +V ATK G ++R  L +F     + G  A+K
Sbjct: 582 TAFLNLEDTEKIVALASL-----NGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIK 636

Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  DEI+S      E + L+  TK+G  +RFP+S +R   GRN+ GV+ I L  GD+V+
Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S+ ++   +                                                   
Sbjct: 696 SVDVIPPGE--------------------------------------------------- 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++I++V
Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  G +IR PV+EI +  R TKGV +     D
Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794


>gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 820

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 351/891 (39%), Positives = 520/891 (58%), Gaps = 87/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I   ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M  + +    K+
Sbjct: 5   ENELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G +HPHG   IY  L RMAQ W +R  L++GQGNFGSVDGDPPAA RYT
Sbjct: 65  RKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  L+DDL K+TVD  PNYD +  EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++    V+DNP+  +  +M+++  PDFPTG +I G  G+K AY TGRG I++R
Sbjct: 185 PHNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGGIICGYRGVKEAYHTGRGKIILR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV +IE+   DRE +V+ +IPY VNK+ ++E+IAEL   K +  I+DLRDESD+ G R+V
Sbjct: 245 GVVNIEEKK-DREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG   DVI+NQLY++T LQ  F  NM+AL+   P    +  ++ ++V  R EVV R
Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLALDKGLPRTMNIKQLIGSWVDHRIEVVRR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA  R H+L G   A+ NLDEVV+IIR S + E A+  L++            
Sbjct: 364 RTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEH----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S  Q  A+L+LRL +LTGL RD I++E + L  +I+    +L
Sbjct: 413 ---------------FEFSIKQANAVLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   +  IIK+EL  ++ +  + R T+IVE   DM+ ED I  E  ++T+S   Y+KR+
Sbjct: 458 ASEQMVRDIIKEELDEIQVKHKSERATQIVEAEGDMDIEDLIANEPAIITISQDDYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           P+  +R QRRGG G  G    ++ED +  L++ +TH  +L F++LG  Y  KVW++P GS
Sbjct: 518 PVDTFREQRRGGTGVVGFNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGS 577

Query: 611 PQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            +++GK L+N+LS +   E I T++     E    + YV+ AT++G V++  +  F    
Sbjct: 578 RRSKGKPLVNLLSDIRSEESIATVLQTSNFEG---DRYVLMATRNGIVKKTPIDAFSNPR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G  A+ +   DE+        E  ++L T  G  VRF    +R   GR + GV+G+SL
Sbjct: 635 RNGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRFDHHKVRSM-GRMARGVKGVSL 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                                GD + +   +    V GN     
Sbjct: 694 ------------------------------------KGDNDRVVGCE---VVSGN----- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + +L V E GFGKR++  DFR +NR G G+R+   S+ N  G +V    + D
Sbjct: 710 --------ETVLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSERN--GKVVGAVCITD 759

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D ++++S  G  +R+ + ++R+  R T+GV + +  +D+ +V+++++  +
Sbjct: 760 DDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLANLREDDILVAIQKVESA 810


>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
 gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
          Length = 878

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 360/888 (40%), Positives = 530/888 (59%), Gaps = 72/888 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 15  IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 75  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 134

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL+D+  +TVD+  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 135 KALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++ G +A+I+NP++    LM +I GPDFPTG  ILGRTGIK  Y +GRGS+ +RGV+
Sbjct: 195 LGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGVA 254

Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE        DR+ +++T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR G R+
Sbjct: 255 AIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMRI 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 315 VVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETIE 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L +R          
Sbjct: 375 RRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHG-------- 426

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+VQ  AIL+++L RLT L  D IR E   L ++I +  DI
Sbjct: 427 ------------------LSDVQADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKDI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+ GII+ EL  ++D    PRRT I++    ++D D I  E  VV ++  GY+KR
Sbjct: 469 LGRRERVFGIIQDELGQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLKR 528

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  S
Sbjct: 529 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCS 588

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E IT+++   E     + L +   T+ G ++R +LS F  I  
Sbjct: 589 RTAKGTPVVQLLPIPREEMITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 645

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +R   GR + GVR ++
Sbjct: 646 NGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSMN 704

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE--GNIS 786
           L  GD ++SM ++    AD   R+                     S ++DS  +  G++S
Sbjct: 705 LRDGDALVSMDVLPVELAD---RVA-------------------QSSEDDSGEDETGDVS 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +           ++L  S  G GKR     FR+  R+G G+RA       E  ALV +  
Sbjct: 743 D---------GPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TEADALVGLRV 791

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V
Sbjct: 792 LGAGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEV 839



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLG 596
           +V + S LG  KRVP++ +R Q+R G G   +  R E D +  L ++     VL  S  G
Sbjct: 748 LVASASGLG--KRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVLGAGEEVLLVSEKG 805

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            + +     +P    Q+R    + +  L++G+R++ ++  P
Sbjct: 806 VIVRTSADSIP---QQSRAATGVRLQRLDKGDRLSEVVLVP 843



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+ ++ ++E G+ KR    +F  ++R  +G +A   S+  E  A+      ND+D
Sbjct: 509 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFIGCNDHD 565

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            ++L SD+G    +P   +   SR  KG   V +    ++E + S+  + E
Sbjct: 566 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLLAVSE 616


>gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58]
 gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58]
          Length = 829

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 354/892 (39%), Positives = 527/892 (59%), Gaps = 93/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+ 
Sbjct: 5   EEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKHR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I G+  G YHPHG + IY  L RMAQ W++R  L++GQGNFGS+DGDP AA RYTE
Sbjct: 65  KCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  +A FL++DL KDTVD   NYD +  EP V  A++PN+L NG  GIAVGMATNIP 
Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE+++  + ++ NP   ++ +ME++ GPDFPTG +I G  GI + Y TGRG I +R 
Sbjct: 185 HNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIICGHEGICSTYHTGRGKIKVRA 244

Query: 253 VSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             H+E+ T   RE IV+TEIPY VNK+ ++E+IA+LV +K +  I+D+RDESD++G RVV
Sbjct: 245 RLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+G S++V++N+LY++T +Q+ F  NM+AL+   P    +  ++ A++  R EV+ R
Sbjct: 305 LELKKGESSEVMINRLYKFTDVQTTFGANMLALDKNLPRTMNIHRMISAWIRHRAEVLRR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA  RAH+L G   A++ LD VV+ I+ S + E A++++++            
Sbjct: 365 RTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIE------------ 412

Query: 432 DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +Y  ++ Q  AILELRL +LTGL  +  R E + L  +I     +
Sbjct: 413 ---------------LYGFTDAQAVAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II+ EL  +     TPR+T I     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LADEELVKDIIRTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R QRRGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPIKVFREQRRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +++GK+LIN L  +  GE++  I+     +S  N  ++  ATK G V++  L  F  
Sbjct: 578 GERRSKGKSLINFLEGIRPGEQVAAILNV---KSFENADFLFLATKQGVVKKVPLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++      E+D ++L TKLG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S                                                
Sbjct: 694 VSLKNQEDCVVS------------------------------------------------ 705

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
               CQ +    Q +L V E GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 706 ----CQ-IVTDNQSVLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERN--GDVLGAV 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           PV DND I+L+S +G  IR+ + ++RI  R+T+GV +      + +V++ER+
Sbjct: 759 PVADNDSILLMSGQGQAIRISMQDVRIMGRSTQGVRLVHLKDGDVLVAMERL 810


>gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
 gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
          Length = 867

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 360/901 (39%), Positives = 520/901 (57%), Gaps = 97/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 21  VRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRRILYAMFDNGYRPERGYVKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   + MG YHPHG++AIYD + RMAQ WS+R  L++GQGNFGS   D PAA RYTE RL
Sbjct: 81  KPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARL 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF+PNYDG   EPV+L +R P +L+NG GGIAVGMATNIP HNL
Sbjct: 141 TPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGGIAVGMATNIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV D     +DNPD D    LDA+ME I+GPDFPT A I+G  GIK AY TGRGSI +R
Sbjct: 201 REVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQIVGDKGIKEAYTTGRGSIRMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
           GV+ IE+  G R+ IV+TE+PYQVN   M+  IA+ V++ R+  IA + DESD + G R+
Sbjct: 261 GVTSIEQ-EGTRQSIVITELPYQVNPDRMIANIADQVKDGRLQGIASIDDESDLKWGMRI 319

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V++LKR A   V+LN LY+++ LQ+ F  NM+A+    P    +  ++  +VA + EV+V
Sbjct: 320 VVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVDGVPRTLRIDQMVTLYVAHQIEVIV 379

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++   RAH+L GL  A+  LDEV+ +IR S   +TAR  LM            
Sbjct: 380 RRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSATVDTARTGLM------------ 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AIL ++L RL  L R  I +EL  + +EI +  DI
Sbjct: 428 --------------GLLDIDEIQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDI 473

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R   I+K+EL  V ++    RRT+IV    D+ +ED I RE++VVT++  GY KR
Sbjct: 474 LANPDRQRAIVKEELGEVVEKYGDDRRTQIVAAEGDVTEEDLIARENVVVTITSTGYAKR 533

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +
Sbjct: 534 TKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWILFFTNKGRVYRLKAYELPEAT 593

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++     +S  ++ Y+V AT  G V++++L D+     
Sbjct: 594 RAARGQHVANLLEFQPEERIAEVLQI---QSYQDSPYLVLATSEGKVKKSRLEDYESARS 650

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L   D ++    C+ ++D+LL ++ GQ +RF  S  A+R   GR + GV+G+ 
Sbjct: 651 AGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTASDDALRPM-GRATAGVQGMR 709

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+++SM +V                            EE  +L             
Sbjct: 710 FKGDDKLLSMVVV----------------------------EEEHNL------------- 728

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      + T    G   + S Y  +  NR G G+         + G L+    V+
Sbjct: 729 ----------LVATTGGFGKKTKLSEYTPQ--NRGGMGVLTLKYDP--KRGPLMGALVVD 774

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++D+I  V+  G +IR  VNEIR  SRATKGV + + A    +++++R     + DE E 
Sbjct: 775 NDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADGVELLAIDR----NVEDEGEE 830

Query: 909 T 909
           T
Sbjct: 831 T 831


>gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 879

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 358/906 (39%), Positives = 524/906 (57%), Gaps = 98/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC+
Sbjct: 43  VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD      L+AL++ I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + EV+ 
Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVID 401

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L G   A+  +DEVV +IR S + +TAR  LM          +L
Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------NL 451

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ D                VQ  AIL ++L RL  L R  I +E   L  +I++  DI
Sbjct: 452 LDVDD----------------VQADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDI 495

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+  GY+KR
Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEGS 615

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    +
Sbjct: 616 RDSKGQHVANLLQFTPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C  E+DI+L +KLG  ++F     ++   GR + 
Sbjct: 673 GGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+   + D+++ M +V                                      SVE
Sbjct: 733 GVQGMRFREDDELLDMDVV--------------------------------------SVE 754

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +             + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 755 TS-------------KDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E + 
Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEERD- 858

Query: 903 VDEAES 908
            DE+++
Sbjct: 859 -DESDN 863


>gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 899

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 354/911 (38%), Positives = 518/911 (56%), Gaps = 137/911 (15%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M ++GV  NK  VK ARI G+
Sbjct: 11  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 70

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD LARMAQD+SLR  L+ GQGNFGS+DGD PAA RYTE ++     
Sbjct: 71  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 130

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+DL K+TVD  PNYD S +EP+VL +  PN++VNG  GIAVGMATN+  HNL EV  
Sbjct: 131 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 190

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A+ +NPD+  + LME ++GPDFPTGA++ GR+GI+ AY TG G + +R  + IE  +
Sbjct: 191 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 250

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + +I+VTEIPY VNKA + +KIA+LVR+KRI  I D+RDES R   R+VIEL+R A  
Sbjct: 251 KGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAVG 309

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +V+LN L++YT LQ+ FS+  +AL    P+  TL  +L+ ++  R +V+ R T++ L KA
Sbjct: 310 EVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 369

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL IA  N+DEVV+IIR S   E A++ L  R                    
Sbjct: 370 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR-------------------- 409

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L E+Q++AI+++RLA+L GL  + +  E N L   + +  DIL  R R + I
Sbjct: 410 ------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAI 463

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           + Q+L +V D+    RRT I E + D +DED I  E+ V+T+S  GY++R+P+  ++AQ 
Sbjct: 464 MLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQN 523

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG  G  ++DED V  +F  STH+ +L F++ G VY  KV+RLP G+   +G+ ++N
Sbjct: 524 RGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVN 583

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            ++L +GE++  I+P            +VFATK G + +  L+ F +  ++G  A+ LD 
Sbjct: 584 FVALTEGEKVQAIVPV---RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDE 640

Query: 681 RDEILSV----------ETCTQEND----------------------------------- 695
            DE++ V          E     +D                                   
Sbjct: 641 DDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANR 700

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                 +++ TK GQ V FPIS  R   GR + GV+GI+L                A+ D
Sbjct: 701 PIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITL----------------AEGD 743

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           E I  +   +  +                                     ILT++EKG+G
Sbjct: 744 EVISLLWLKAGNK-------------------------------------ILTITEKGYG 766

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KR+    +R++ R  KG+R  +V+  ++IGA V V  V D+  +I+ S  G +IR+   +
Sbjct: 767 KRSEPGSYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAAD 824

Query: 870 IRIASRATKGV 880
           IR+  R  +GV
Sbjct: 825 IRLTGRNAQGV 835


>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
 gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
          Length = 876

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 364/905 (40%), Positives = 532/905 (58%), Gaps = 71/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 19  IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL+D+  +TVD+  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 139 KALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++ G +A+I+NP++    LM +I GPDFPTG  ILGRTGIK  Y +GRGS+ +RGV+
Sbjct: 199 LGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGVA 258

Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE        DR+ +++T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR G R+
Sbjct: 259 AIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 319 VVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETIE 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L +R          
Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERHG-------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 431 ------------------LSEVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+ GII+ EL  ++D    PRRT I++    ++D D I  E  VV ++  GY+KR
Sbjct: 473 LGRRERVFGIIQDELAQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  S
Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E IT+++   E     + L +   T+ G ++R +LS F  I  
Sbjct: 593 RTAKGTPVVQLLPIPREEMITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +R   GR + GVR ++
Sbjct: 650 NGLIAIGLEEGDALTWVRLAVSGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++SM ++    AD               R+     ++    +  ++ +G     
Sbjct: 709 LRDGDALVSMDVLPVELAD---------------RVAQSGDDDSDDDEAGAASDG----- 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA       +  ALV +  + 
Sbjct: 749 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADALVGLRVLG 797

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVERIRESEIVDE 905
             ++++LVS+KG ++R   + I   SRA  GV +    K +R   VV V    ES+   E
Sbjct: 798 AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVPPEAESDDATE 857

Query: 906 AESTE 910
            E  E
Sbjct: 858 GEGEE 862


>gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A
 gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] -
           Ureaplasma urealyticum
 gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 840

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 352/891 (39%), Positives = 514/891 (57%), Gaps = 87/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   + G+  +K Y K A
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ A+Y  + RMAQD+S+R LL++G GNFGS+DGD  AA RYTE RL
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV     A   N ++ +  +ME ++GPDFPTGA I G +GI   + TGRGS+ IR    
Sbjct: 205 TEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIRSKYE 264

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R  IVVTEIPY VNKA ++EKI ELV  K+I  I+DLRDES R G R+VIE+K
Sbjct: 265 IEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEVK 324

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LN+L++ T LQ+ FSVN +AL    P    +  ++K +   + E++VRRT +
Sbjct: 325 RDVIPEVLLNKLFKTTPLQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEILVRRTNF 384

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++R H++ GL IAV N+DEV++II+ S + + A + L+QR               
Sbjct: 385 DLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQR--------------- 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+QT+AILE+RL  LTGL  D ++ E   L + IK+  D+L++ +
Sbjct: 430 -----------FDLTELQTKAILEMRLRALTGLNIDKLKKEYEDLILVIKDLEDVLNNYN 478

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II + L  + ++    RRT I+ G+   ++DED I  ED+VVT+S  GY KR+P+ 
Sbjct: 479 RQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPID 538

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+ +   +P+GS Q++
Sbjct: 539 TYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSK 598

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN L + + E I TI+P      +++   + F T  G ++R  LSDF  I  +GKI
Sbjct: 599 GIPAINFLPIEKSESILTILPI----DNYDQGSLFFTTSKGIIKRANLSDFESIRANGKI 654

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++ SV      +++ +    G  +RF  +  R   GR + GV+GI+L   + 
Sbjct: 655 AITLKDGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLENDEY 713

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +  H +                                                 
Sbjct: 714 VVGTGLSSHGE------------------------------------------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               ++L V  KG GK T   D+R++ R  KG+    V+  ++ G LV++  VN  ++ +
Sbjct: 725 ----YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DKTGNLVSIKVVNREEEAL 778

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++  G +IR+ + +I +  R T GV + S    E V S+   ++ EI DE
Sbjct: 779 IITTSGKVIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEINDE 829


>gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
 gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
          Length = 839

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 353/911 (38%), Positives = 535/911 (58%), Gaps = 98/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP+VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG ++IR
Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++  G ++ IVVTE+PYQV+ + +L+K ++LV+E R+  I D+RDES R   R+V
Sbjct: 243 AKAEFQEIKG-KDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FSVN +AL   +P+   L  ++  FV  R +VV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLD---EVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +A  D   + + IIRF   P+                +
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPK----------------E 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           DLI   D             L++VQ  AIL L L R+  +     + E      EI++  
Sbjct: 406 DLIAEFD-------------LTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +     +DE   +N Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R   GRNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEEKVRA-VGRNSQGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L                                      DTE      ND  V G I+
Sbjct: 692 IDL--------------------------------------DTE------NDEVV-GMIA 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIG 839
            E       +E+ +L VSE G+GKR+   D       +RI+NR GKG++   +++  + G
Sbjct: 707 IENP-----REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KTG 759

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA+  V + + +++++  G  IR+ ++ +RI  RAT+GV + +    + + +V ++ +
Sbjct: 760 QLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVMK 819

Query: 900 SEIVDEAESTE 910
               D+ ESTE
Sbjct: 820 E---DDDESTE 827


>gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
 gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
          Length = 827

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 373/901 (41%), Positives = 542/901 (60%), Gaps = 103/901 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +++I + +Q+SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    K+ K A
Sbjct: 10  IQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSHGAKFKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+G+YHPHG+ A+YDAL RMAQ +S+R+ L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 70  RIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAAMRYTEARM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP HN 
Sbjct: 130 TKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHNP 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G  A++ NP+I+L  LME I+ PDFPTG  I G+ GI +AYATGRG I +R  +H
Sbjct: 190 QEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIFGKKGIMDAYATGRGRIKVRAKTH 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G+++ I++ E+PYQVNKA ++E IA LV++K I  ++++RDESDR+G RVVIELK
Sbjct: 250 IEK-KGNKDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDREGIRVVIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A ++++LN L++ TS+Q  F + M+++   +P  F +I ILK F+  R+ +++RRT +
Sbjct: 309 KDAMSEIVLNNLFKQTSMQVTFGIIMLSILNQEPRIFGIIDILKHFINHRKTIIIRRTIF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL  A+  +DE++R+I+ S N E AR  L+                 
Sbjct: 369 DLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSE--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         S +Q ++I+++RL RLTGL R+ I NEL  L   I     IL S  
Sbjct: 414 -----------FDFSVIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILKSEE 462

Query: 496 RLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            L GII QE     DEL T     RRT + +   D++ ED I  E MVVT++H GY+KRV
Sbjct: 463 VLHGIIDQEF----DELLTIYTDVRRTDVEDDYDDIDVEDLIPNEPMVVTITHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y  Q+RGGKG+  V   ++DF+   F  +TH ++LF +  G ++  KV+++P GS 
Sbjct: 519 PLAQYEKQKRGGKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            A+GKA++N+L+L   E+I +I P   F E++S      +VF TK G V+R  LS+F  I
Sbjct: 579 TAKGKAVVNLLNLVADEQIQSINPTTDFSEEKS------LVFFTKKGVVKRTNLSEFSNI 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +G  A+ LD  D I++ +   +    + + TK+ QC++F +   R   GRN+ GVRGI
Sbjct: 633 RSNGVKAILLDDDDSIITAKIADKSIKYLFIMTKMSQCIKFDMEKTR-DQGRNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                          HA+                                D  V+ NI  
Sbjct: 692 KFK------------HAE--------------------------------DEVVDANI-- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFP 846
                +   EQ IL VSEKG GKRT + ++R++NR G G+ A  ++   + G  +V    
Sbjct: 706 -----IANDEQEILVVSEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYVVGCLM 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V++   ++ ++  G +IRV +  I  +SR T GV I    K + V SV R  +  I D+ 
Sbjct: 759 VDEEMDMMALTKAGKMIRVDMQTISKSSRNTSGVYI---VKGDDVASVSRCPKQPIEDDE 815

Query: 907 E 907
           E
Sbjct: 816 E 816


>gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 836

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 353/892 (39%), Positives = 512/892 (57%), Gaps = 92/892 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 12  IEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IY  + R+AQ W+LR  LI+GQGNFGS   D PAA RYTEC+L
Sbjct: 72  RVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSPGNDMPAAMRYTECKL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF+PNYDG  QEP+VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 132 APIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    + NP+      L+AL+  ++GPDFPTGA+I+GR GI +AY TGRGSI +R
Sbjct: 192 REVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIVGRRGIDDAYRTGRGSITMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            +  +E+ +  R+ +VVTE+PYQVN   +   IAE V+E RI  IAD+RDE S R G R+
Sbjct: 252 AIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGIADVRDESSSRVGQRL 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P    L   ++ +VA + EVVV
Sbjct: 312 VIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDGVPRTLRLDQFVRHYVAHQIEVVV 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +RAH+L  L  A+  +DEV+ +IR SP+   A+  LM            
Sbjct: 372 RRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQGGLM------------ 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q +AIL+++L +L  L R  I +E ++L   I +   I
Sbjct: 420 --------------ALLEIDEIQAQAILDMQLRKLAALERQQITDEYDTLMAHITDYQAI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  +  +    R+T I+    DM  ED +  EDMVVT++  GY KR
Sbjct: 466 LASPERQRTIVFDELSEIVSKYGDERKTEIIAYEGDMSIEDLLAEEDMVVTITRGGYAKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YRAQ+RGGKG  G  +R +D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 526 TNTDLYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNKGRVYRVKAYELPDSG 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ L N+L++   E +  ++   + E +    Y+V AT+ G V++ +LS++     
Sbjct: 586 RDARGQHLANLLAMQPDEVVMEVLDLRDYEVAP---YLVLATRSGLVKKTRLSEYDSPRS 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE+++    ++E+D+LL ++  Q +RF  S  A+R   GR + GV G+ 
Sbjct: 643 GGLIAINLREDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEALRPM-GRATSGVIGMR 701

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD++++M                        R+  GD                    
Sbjct: 702 FLGGDELLAM-----------------------NRIGDGDD------------------- 719

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L  +E G+ KRT +  + +  R GKG+    +  ++  G LV    V 
Sbjct: 720 -----------VLIATEGGYAKRTPADQYPVQGRGGKGVLTAKI--VSARGKLVGAAMVR 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             D++  ++  G +IR    EI+ + R T GV + + A+ + VV++ R  E+
Sbjct: 767 PEDEVFAITSAGGVIRTSAGEIKQSGRQTMGVRLMNLAEGDSVVALARNAEA 818


>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
 gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
          Length = 874

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 363/901 (40%), Positives = 532/901 (59%), Gaps = 73/901 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 19  IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 139 RALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG  A+I NP+I    L+++I GPDFPTG  ILGR GI+  Y  GRGS+ +RGV+
Sbjct: 199 LNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREGIRETYLGGRGSVTMRGVA 258

Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +IE        DR+ +++TE+PYQ NKAA++E+IAELV +K++  I+D+RDESDR G R+
Sbjct: 259 NIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETIE 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L  R          
Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHG-------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 431 ------------------LSDIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+ GII+ EL  +++   T RRT I++    + D D I  E  VV ++  GY+KR
Sbjct: 473 LGRRERVFGIIQSELGQLQERYPTRRRTEILDLGGGLSDIDLIANERSVVLLTETGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + ED V      + H +++ FS  G  Y    +R+P  S
Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E ITT++P  E     ++  +V  T+ G ++R +LS F  I  
Sbjct: 593 RAAKGTPVVQLLPIPREEAITTLIPVSE---FSDDTDLVMLTRGGFIKRTRLSAFSNIRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ +K G  + F +S   +R   GR + GVR ++
Sbjct: 650 NGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSDEELRPL-GRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++SM ++    AD          ++A     S + EE      D++ EG     
Sbjct: 709 LRDGDALVSMDVLPVELAD---------QVAA-----SAEDEE------DAASEG----- 743

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA       +   LV +  + 
Sbjct: 744 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDTDELVGLSVLG 792

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             ++++LVS+KG ++R   + I   SRA  GV +    K +R++ V  +      D A+ 
Sbjct: 793 AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDDPADD 852

Query: 909 T 909
           T
Sbjct: 853 T 853


>gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica]
          Length = 855

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 354/894 (39%), Positives = 526/894 (58%), Gaps = 97/894 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ +E+  S+L Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+GV   K +VKCA
Sbjct: 6   IKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKAHVKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GE MG +HPHG+ +IY  L  M Q WS+R +L++GQGNFGSV+GD  A+ RYTE RL
Sbjct: 66  KIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +++DL K TVDF+PNYDGS +EP VL + +PN LVNGG GIAVGMATN+  HNL
Sbjct: 126 HPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNLAPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG  A ID PDI L  LM+ I+GPDFP    I G  GI+  + TGRGS+ +RG   
Sbjct: 186 GEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIRGIEEYFRTGRGSMRLRGKVE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    +  IV+ E+PY VN+A + E+IAELV EK +  I+ +RD SD +  R+ IELK
Sbjct: 246 IEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEE-TRIEIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   V++ QL++ T+L++ FSVNM+A++  +P++ +L   + A++  R +V++RRT++
Sbjct: 305 RDARPQVVVAQLFKLTALETSFSVNMLAIHQNRPKQLSLKEAIDAYIEHRRDVIIRRTRF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KA +RA +L    +A+ +LD+ +RIIR S N + AR EL    +             
Sbjct: 365 LLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEAR-ELQGDRY------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AILELRL +LTG+ +D ++ E + + IEIK+ LDIL+   
Sbjct: 411 ------------VFSERQVNAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDILAREV 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L IIK EL  ++D+  TPR+  I+    ++  ED I  + M+VT+SH GYVKR P + 
Sbjct: 459 RVLTIIKDELRVIRDKYATPRKCPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRTPATE 518

Query: 556 YRAQRRGGKGRSGV----VMRDE--DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           YR Q RGGKG  G+      +DE  DFV  LF V  H  +LFF++ G VY E+V+ LP G
Sbjct: 519 YRLQGRGGKGLKGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFELPEG 578

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNL-------YVVFATKHGNVRRNK 661
           S  + G+++ N+L+L   E+I  ++      + + N++       +V FAT++G V++  
Sbjct: 579 SRTSTGRSIKNVLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKVKKTA 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRN 720
           L+DF    + G IA+ LD  ++++ V   + E++I+L T+ G  ++F     ++   GR 
Sbjct: 639 LNDFRNYRKDGIIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRPQGRA 698

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L K D V+ MAIV                                       
Sbjct: 699 TAGVTGIRLRKDDYVVGMAIV--------------------------------------- 719

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                SEE           +L  SE G GKRT+   +R   R G G++  +V+  ++ G 
Sbjct: 720 -----SEE---------TMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVT--DKTGK 763

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +V    V + D+++L++  G  IR+ VNEIR   R  +GV + +  + E++  +
Sbjct: 764 VVNAVSVTEQDELMLMTSTGQSIRIRVNEIRETGRVAQGVKLLTLKEGEKLQDI 817


>gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
          Length = 841

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 353/911 (38%), Positives = 535/911 (58%), Gaps = 98/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP+VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG ++IR
Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++  G ++ IVVTE+PYQV+ + +L+K ++LV+E R+  I D+RDES R   R+V
Sbjct: 243 AKAEFQEIKG-KDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FSVN +AL   +P+   L  ++  FV  R +VV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLD---EVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +A  D   + + IIRF   P+                +
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPK----------------E 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           DLI   D             L++VQ  AIL L L R+  +     + E      EI++  
Sbjct: 406 DLIAEFD-------------LTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +     +DE   +N Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R   GRNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEDKVRA-VGRNSQGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L                                      DTE      ND  V G I+
Sbjct: 692 IDL--------------------------------------DTE------NDEVV-GMIA 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIG 839
            E       +E+ +L VSE G+GKR+   D       +RI+NR GKG++   +++  + G
Sbjct: 707 IENP-----REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KTG 759

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA+  V + + +++++  G  IR+ ++ +RI  RAT+GV + +    + + +V ++ +
Sbjct: 760 QLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVMK 819

Query: 900 SEIVDEAESTE 910
               D+ ESTE
Sbjct: 820 E---DDDESTE 827


>gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
 gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
          Length = 931

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 359/905 (39%), Positives = 530/905 (58%), Gaps = 85/905 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G   ++ Y KC+
Sbjct: 71  VDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNKCS 130

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+YHPHG++AIYDAL R+ Q WS+R  L++GQGNFGS   D  AA RYTECR+
Sbjct: 131 RVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTECRM 190

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ D+ ++TVDF PNYDG   +P VL +R+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 191 APLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPHNL 250

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV D    ++ NP+   +AL+E     I GPDFPTGA+I+G+ G+++AY TGRGSI +R
Sbjct: 251 REVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKRGVEDAYRTGRGSITMR 310

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN  A+ EKIA LV++ ++  IAD+RDE S R G R+
Sbjct: 311 AVVNVEEIQG-RQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTGQRL 369

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P    +   ++ +V  + +V+V
Sbjct: 370 VIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPISAFIRYWVEHQIDVIV 429

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  R H+L GL  A+  LDEV+ +IR SP  + AR               L
Sbjct: 430 RRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDAR-------------TGL 476

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I+L+D             + E+Q  AILE++L RL  L R  I  + + L  +I +  DI
Sbjct: 477 IELLD-------------IDEIQANAILEMQLRRLAALERQRIIEQHDELQSKIDDYKDI 523

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + ++    RR++IV    DM  ED I  ED+VVT++  GYVKR
Sbjct: 524 LAKPERQRQIVSDELAEIVEKYGDDRRSQIVPFDGDMNMEDLIPEEDVVVTITRGGYVKR 583

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +S YR+QRRGGKG  G  +R +D V   F  STH  +LFF++ G VY+ K + LP GS
Sbjct: 584 TKVSEYRSQRRGGKGVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPEGS 643

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L+   GE+I  +M      +  ++ Y++ AT++G V++ +LS++     
Sbjct: 644 RDSKGQHVANLLAFQPGEQIAQVMAL---RTYADSEYLLLATRNGLVKKTRLSEYDSPRS 700

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++     T ++D+LL ++ GQ VRF  +  ++R   GR++ GV G+ 
Sbjct: 701 GGLIAVNLRDGDELVGAGLATHDDDVLLVSRKGQAVRFAATDDSLRPM-GRSTSGVTGMK 759

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +GD+++SM +V                                  K  + VE    E+
Sbjct: 760 FREGDELLSMNVV---------------------------------PKGANEVERGADEK 786

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C         +  V E G  KRT   ++    R+  G++   +S+    G LV    V 
Sbjct: 787 LC---------VFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERG--GDLVGALVVE 835

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDE 905
           + D++++V +KG ++R  V E+R   R T+GV   +  K + +V+V R  E    EI D+
Sbjct: 836 NRDEVMVVMEKGKIVRSAVAEVRETGRNTQGVQFATPGKGDSIVAVARNAEKDSEEIDDD 895

Query: 906 AESTE 910
           A  +E
Sbjct: 896 AVVSE 900


>gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
 gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 830

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 348/892 (39%), Positives = 529/892 (59%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRILF M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A  L++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+  PD  ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              HIE+ +   RE I++TE+PY VNK+ ++E+IA+LV +K +  I D+RDESD+ G RV
Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S+++++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R EV+ 
Sbjct: 304 VLELKKGESSEIVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LD++VR IR S + E A+ +L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 413 ---------------NFGFTEQQSVAILELRLYQLTGLESEKIQKEYDELINKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRT I     D+ D ED I  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQDLQKLHKTPRRTTIEFDADDVRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKQGVVKKVSLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE++ +V   ++E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV                                  K+D SV    
Sbjct: 694 VSLKNEKDRVVACQIV----------------------------------KDDQSV---- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 716 ---------------LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D+D I+L+S +G  IR+ + ++R+  R+T+GV +      + +V++E++
Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKDGDTLVAMEKL 810


>gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
 gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
          Length = 856

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 352/899 (39%), Positives = 523/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 12  IQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RYTECR+
Sbjct: 72  RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    ++DNP+      L A ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 192 NELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+ SG+R+ IV+TE+PYQVN   M+  IAE V   +I  IA + DE SDR G R+
Sbjct: 252 GVTSIEE-SGNRQTIVITELPYQVNPDNMISNIAESVANGKIAGIAKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR  L          K L
Sbjct: 371 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KTL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +  +DD               VQ  AIL ++L RL  L R  I +EL  +   I +  DI
Sbjct: 421 L-AVDD---------------VQADAILAMQLRRLAALERQKIIDELAEIEEIIADLKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + ++    RRT+IV    D+ DED I RE++VVT++  GY KR
Sbjct: 465 LAREERQRQIVHDELAEIVEKYGDERRTQIVAASGDVTDEDLIARENVVVTITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ G VY+ K + LP   
Sbjct: 525 TKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V ATK G V++++L+D+     
Sbjct: 585 RTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATKQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++      + +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ++SM++V   D  Y                                         
Sbjct: 702 RGDDQLLSMSVV--HDGGY----------------------------------------- 718

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +  G+GKRT+  ++    R G G+     +   + G L+    V++
Sbjct: 719 ----------LLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP--KRGKLIGAIAVDE 766

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            D+I  ++  G +IR  VN+IR +SRAT GV + + + D  +++++R  E    ++A++
Sbjct: 767 EDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLSNDVELLAIDRNVEDHGEEDAQA 825


>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A,
           chloroplastic/mitochondrial [Vitis vinifera]
          Length = 911

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 348/880 (39%), Positives = 521/880 (59%), Gaps = 77/880 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y KCA
Sbjct: 66  IVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCA 125

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR  LI+G GNFGSVD DPPAA RYTECRL
Sbjct: 126 RVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRL 185

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL DL +DTVDF PN+D S +EP +L AR P +L+NG  GIAVGMATNIP HN
Sbjct: 186 EALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHN 245

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GE+VD    +I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGRG I++RG +
Sbjct: 246 IGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRTGRGRIIVRGKT 305

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +E   +   R  +++ EIPYQ NK++++EKIAELV  K +  I+D+RDESDR G R+VI
Sbjct: 306 EVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVI 365

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG+   ++LN+LYR T+LQS FS NM+ +   +P+   L  +L+AF+ FR  VV RR
Sbjct: 366 ELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERR 425

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L++A++R H++ G+ + + NLD V+R+I+ +P+   A                   
Sbjct: 426 ARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMA------------------- 466

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                  + G      LSE Q  AIL++ L R+T L R+    E  SL  +I +  ++LS
Sbjct: 467 -------STGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLS 519

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SR ++L +I+QE + +K+   TPRR+ + +     +ED D I  E+M++ VS  GYVKR+
Sbjct: 520 SRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRM 579

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             + +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V+  + +++P  + 
Sbjct: 580 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTR 639

Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            A G  L+ IL L+ GERIT+I+P   F ED+      +++  T +G +++  L+ F  I
Sbjct: 640 TAAGTPLVQILCLSDGERITSIIPVSEFAEDQ------FLLMLTMNGYIKKVSLNFFSSI 693

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA++L   DE+  V  CT ++ + + ++ G  +      IR   GRN+ G   + 
Sbjct: 694 RSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRAL-GRNTRGSIAMR 752

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD++ SM I+  A                              ++ D  +E  + + 
Sbjct: 753 LKQGDKMASMDIIPAA------------------------------IRKD--LEKALEDR 780

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPV 847
           + +   L   ++L VSE G GKR     FR+S  +  G+     S  + + A+  V F +
Sbjct: 781 QSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSL 840

Query: 848 ND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +    ++Q++LVS  GT+ R+ V +I I SR  +GV++ 
Sbjct: 841 TEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILM 880



 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ +L VSEKG+ KR     F + NR   G     V K+    A+      + +D ++  
Sbjct: 564 EEMLLAVSEKGYVKRMKPNTFNLQNR---GTIGKSVGKLRVNDAMSDFIVCHAHDYVLYF 620

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           SD+G +      +I   +R   G   V I   +  ER+ S+  + E
Sbjct: 621 SDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSE 666


>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
 gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 863

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 346/883 (39%), Positives = 530/883 (60%), Gaps = 73/883 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           SS  E  + I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ 
Sbjct: 10  SSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLT 69

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPA
Sbjct: 70  SGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPA 129

Query: 127 AERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           A RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVG
Sbjct: 130 AMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGE+++G  ++I NP ++   L E+I+GPDFPTG  ILGR GIK  + +GR
Sbjct: 190 MATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQILGRDGIKETFKSGR 249

Query: 246 GSIVIRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GSI +RGV+ IE  K+ G  +++ +++TE+P+Q NKAA++E+IA+LV +K++  I+D+RD
Sbjct: 250 GSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEGISDIRD 309

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F
Sbjct: 310 ESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGEPTTLSLRKMLDVF 369

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   + RRT +LL KA +R H++ GL +A+  +D ++ +IR + +  +AR +L +  
Sbjct: 370 LDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTSAREQLQK-- 427

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS +Q  AIL+++L RLT L  D I++E + L 
Sbjct: 428 ------------------------DHELSVIQADAILQMQLRRLTALEADKIKSEHDELT 463

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I +  +IL  + R+  II +EL  + +   +PR+T I+     ++D D I  E  VV 
Sbjct: 464 RKITDYKNILQDKDRINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDLIANERSVVL 523

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GY+KR+P+S + +  RG +G++G   +++D V      + H ++L FS  G  Y  
Sbjct: 524 LTSAGYLKRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLFSDRGVAYAL 583

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +R+P+ S  A+G   + +L + + E+IT+I+     ES  N+ Y++  TK G ++R  
Sbjct: 584 PAYRVPMSSRTAKGTPSVQLLPIPREEQITSIVSV---ESFDNDRYLLMLTKAGFIKRTP 640

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGR 719
           LS F +I  +G IA+ L+  D +  V    + + +L+ +  G  + F +  + +R   GR
Sbjct: 641 LSAFSKIRSNGLIAINLEEGDALTWVRLSKEGDSVLIGSSKGMTIHFRLDNNELRPL-GR 699

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL--KN 777
            + GV+ ++L  GD+++SM +                       L S   +++ SL  +N
Sbjct: 700 TARGVKSMNLKDGDKLVSMDV-----------------------LTSDLVDQLASLENEN 736

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D  +E N S         K  ++L  S  G GKR     FR+  R+G G+RA      ++
Sbjct: 737 DEDIESNSS---------KGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD 787

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
             +LV +  + + +++I V+++G ++R   ++I   SRA  GV
Sbjct: 788 --SLVGLKVLGEGEELIFVTERGVIVRTNADKISQQSRAATGV 828


>gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri]
          Length = 821

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 351/885 (39%), Positives = 541/885 (61%), Gaps = 87/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M  + + + K++ K A
Sbjct: 15  IRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R  LI+G GNFGS+DGDPPAA RYTE ++
Sbjct: 75  RIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTEAKM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+T  F  NYDGS +EP  L   +PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 SKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +AV  NP+I    LM+II+GPDFPTGA+I    G+  AY TG G+I IR    
Sbjct: 195 NEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAGNGLIKAYETGNGAITIRSKID 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +  R +I+V+EIPYQ+NKA +LE+IAELVR+K I  I DLRDES+ +G RVV+ELK
Sbjct: 255 IEENNNKR-RIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNMEGVRVVLELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +VILN+LY+ T LQ+ FS+N++AL   +P    L  ILK F+  + +++++R+++
Sbjct: 314 RDAQENVILNKLYKLTPLQTNFSLNILALYKNQPRVMGLKQILKYFIEHQIDIIIKRSQF 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K R+R  +L GL IA+ N+DEV+ II+ S   + A   L+ +           +L+ 
Sbjct: 374 ELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINK----------FNLVG 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +                Q RAILE+RL RLTGL  + I NE+  + + I E  +I+++  
Sbjct: 424 E----------------QARAILEMRLQRLTGLEIEKINNEIKDIKVAITELEEIINNSE 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + + I+  EL  +K +    RR++I+ E L +++ E+ I RED ++ ++  GYVKRV   
Sbjct: 468 KQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRREDTLIMLTQDGYVKRVSDD 527

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++ Q RGGKG  G+    ED +  +   ++  S+L FS+ G VYK + + +   S  AR
Sbjct: 528 TFKLQNRGGKGIIGLA-NIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSRHAR 586

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +IN++++++ E I TI+   E  S+ +NL+  F TK G +++ K+S+F QI ++GK+
Sbjct: 587 GLPIINLIAIDKTESIQTIIAVDESISTEDNLF--FVTKKGLIKKTKISEFNQIRQTGKV 644

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A++L   DE++SV      +D+++   +G+ +RF    IR    R SVGV+GI+      
Sbjct: 645 AIELKDNDELVSVIITKGYDDVIIGNNIGKVIRFNEKEIRPMT-RQSVGVKGIA------ 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                     DA                   +G+T  ++S ++   V             
Sbjct: 698 ---------NDA-------------------TGETIGVSSGRSAKYV------------- 716

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L+V+E G+ K+T   D+R++ R+ KG+++ +++  ++ G L  V  V+ ++ I+
Sbjct: 717 ------LSVTENGYAKKTIIKDYRLTGRNTKGVKSINLT--DKTGYLKFVQTVDGDEDIL 768

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + + KG +IRV + +I +  R T GV I    +D+++  +E +++
Sbjct: 769 VGTKKGNIIRVSLEQIPLFGRTTSGVKIMRLEQDDKLEVIEILKK 813



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%)

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E   +EL  +E  ++ +++ G+ KR S   F++ NR GKGI    +   N   +L  +
Sbjct: 497 LTEIDPEELIRREDTLIMLTQDGYVKRVSDDTFKLQNRGGKGI----IGLANIEDSLKKI 552

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              N  D +++ S+ G + ++    I   SR  +G+ I +    ++  S++ I     VD
Sbjct: 553 ISANSIDSLLIFSNFGKVYKLRAYNIETYSRHARGLPIINLIAIDKTESIQTIIA---VD 609

Query: 905 EAESTE 910
           E+ STE
Sbjct: 610 ESISTE 615


>gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301]
 gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 883

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 357/906 (39%), Positives = 517/906 (57%), Gaps = 98/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 40  IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM            
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +DI
Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFAPDETIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F     ++   GR + G
Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V   D+D D                                  
Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G GI+A  V  +   GALV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E    
Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEK--- 853

Query: 904 DEAEST 909
           DE E +
Sbjct: 854 DEPEDS 859


>gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104]
 gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104]
          Length = 839

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 356/902 (39%), Positives = 519/902 (57%), Gaps = 94/902 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN + D    L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       + LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++      S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V++ KL+DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D                    Y+  ++  R          
Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                    EG               ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLL 814

Query: 893 SV 894
           ++
Sbjct: 815 AI 816



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++  +  EI     D+      + +G++S+E   +L  +E  ++T++E G+ KRT +
Sbjct: 476 QRGIVRDELAEIVEKHGDARRTRIVAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 532

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  + +G + R    E+  AS
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVRHF---FVCSTHDWILFFTTQGRVYRAKAYELPEAS 589

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901
           R  +G     + +   +ER+  V +IR  E
Sbjct: 590 RTARGQHVANLLAFQPEERIAQVIQIRSYE 619


>gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
 gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
          Length = 896

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 354/902 (39%), Positives = 521/902 (57%), Gaps = 95/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 41  IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 100

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR+
Sbjct: 101 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTECRM 160

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 161 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 220

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +++PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 221 REVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 280

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 281 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 339

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V+ 
Sbjct: 340 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 399

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM+          L
Sbjct: 400 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME----------L 449

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L  LT + RD I  E   L  +I + +DI
Sbjct: 450 LD----------------IDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 493

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 494 LAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 553

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 554 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 613

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I  ++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 614 RDSKGQHVANLLQFAPDESIQAVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 670

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F  +  ++   GR + G
Sbjct: 671 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAG 730

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+   +GD++++M +V   D+D D                                  
Sbjct: 731 VQGMKFREGDELLAMDVVW-GDSDKD---------------------------------- 755

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G GI+A  V  +   G+LV 
Sbjct: 756 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGSLVG 797

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +  
Sbjct: 798 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDEILSIARNEEKDDP 857

Query: 904 DE 905
           +E
Sbjct: 858 EE 859


>gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 844

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 356/890 (40%), Positives = 512/890 (57%), Gaps = 87/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   + G+  +K Y K A
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD  AA RYTE RL
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV     A   N DI +  +ME ++GPDFPTGA I G +GI N + TGRGS+ IR    
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIRSKYE 264

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R  IVVTEIPY VNK  ++EKI ELV  K+I  I+DLRDES R G R+VIE+K
Sbjct: 265 IEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEVK 324

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LN+L++ T+LQ+ FSVN +AL    P    +  ++K +   + EV+VRRTK+
Sbjct: 325 RDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVRRTKF 384

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R               
Sbjct: 385 DLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR--------------- 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+QT+AILE+RL  LTGL  D ++ E   L + IK+  DIL +  
Sbjct: 430 -----------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIKDLEDILENYD 478

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II + L  + ++    RRT I+ G+   ++DED I  ED+VVT+S  GY KR+P+ 
Sbjct: 479 RQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPID 538

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+ +   +P+GS Q++
Sbjct: 539 TYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSK 598

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN L + + E I TI+P   D     +L+  F T  G ++R  LSDF  I  +GKI
Sbjct: 599 GIPAINFLPIEKSESILTILPI--DNYEQGSLF--FTTSKGIIKRANLSDFESIRANGKI 654

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++ SV      +++ +    G  +RF  +  R   GR + GV+GI+L   + 
Sbjct: 655 AITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLEDDEY 713

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +  H +                                                 
Sbjct: 714 VVGTGLSSHGE------------------------------------------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               ++L V  KG GK T   D+R++ R  KG+    V+  +  G LV++  VN +++ +
Sbjct: 725 ----YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DRTGNLVSIKVVNRDEEAL 778

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++  G +IR+ + +I +  R T GV + S    E V S+   ++ EI D
Sbjct: 779 IITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDD 828


>gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
 gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
          Length = 903

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 363/903 (40%), Positives = 523/903 (57%), Gaps = 93/903 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           I  D ++   +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G 
Sbjct: 35  IERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGY 94

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ Y KCAR+ G+VMG YHPHG++AIYDAL R+ QDWS+R  L++GQGNFGS   D  
Sbjct: 95  RPDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGA 154

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+   A  ++ D+ +DTVDF PNYDG   +P VL +R+PN+LVNG  GIAVG
Sbjct: 155 AAPRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVG 214

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           MAT IP HNL EV +G    + +P+I     L+AL+ II+GPDFPTG++I+G  GI++AY
Sbjct: 215 MATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHRGIEDAY 274

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI++R + ++E+   +R+ +VVT++PYQVN   +  KIA+LV++ +I  IAD+ D
Sbjct: 275 RTGRGSIIMRAIVNVEEIK-NRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIAD 333

Query: 302 E-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           E S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P    L G ++ 
Sbjct: 334 ETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDDVPRTLPLDGFIRH 393

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+ RRT + L KA    H+L G   A+  LDEV+ +IR S   E AR  L+Q 
Sbjct: 394 WVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ- 452

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                    L+D                + E Q +AIL ++L RL  L R+ I+ + + L
Sbjct: 453 ---------LLD----------------IDETQAQAILNMQLRRLAALERERIQQQHDEL 487

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E   IL+S  R   I+ +EL  + D+    RRT IV    DM  ED I  ED+VV
Sbjct: 488 QELIDEYQAILASEVRQREIVSEELQGIVDKYGDERRTEIVPFDGDMSMEDLIPEEDVVV 547

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY KR    +YR+QRRGGKG  G  +R ED V   F  +TH  +LFF++LG VY+
Sbjct: 548 TITRGGYAKRTRTDLYRSQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYR 607

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + LP GS  ++G+ + N+L+   GE+I  ++   + E++    Y+V AT+ G V++ 
Sbjct: 608 AKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVLAIHDYEAAD---YLVLATRAGLVKKT 664

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAG 718
           +L D+      G IA+ L   DE++        +D+LL ++ G  VRF    SA+R   G
Sbjct: 665 RLRDYDSPRSGGLIAINLREGDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPM-G 723

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GV G+    GD ++SM+ V  A+ D D                             
Sbjct: 724 RSTSGVTGMKFRPGDTLLSMSRV-PAETDVD----------------------------- 753

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +  V E G  KRT   ++R+  R G GI+   V+K++E 
Sbjct: 754 ---------------------VFVVFENGLAKRTPVSEYRVQGRGGYGIQ---VAKLSEK 789

Query: 839 GA-LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G  LV    V  ND++++V +KG ++R  V+E+R  SR+T+GV   +  K + +V+V R 
Sbjct: 790 GGDLVGALTVTGNDEVMVVMEKGKIVRSRVDEVRHTSRSTQGVRFAAPDKGDAIVAVARN 849

Query: 898 RES 900
            ES
Sbjct: 850 AES 852


>gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 839

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 356/902 (39%), Positives = 518/902 (57%), Gaps = 94/902 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L  + ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN + D    L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       + LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++      S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V++ KL+DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D                    Y+  ++  R          
Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                    EG               ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLL 814

Query: 893 SV 894
           ++
Sbjct: 815 AI 816



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++  +  EI     D+      + +G++S+E   +L  +E  ++T++E G+ KRT +
Sbjct: 476 QRGIVRDELAEIVEKHGDARRTRIVAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 532

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  + +G + R    E+  AS
Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVRHF---FVCSTHDWILFFTTQGRVYRAKAYELPEAS 589

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901
           R  +G     + +   +ER+  V +IR  E
Sbjct: 590 RTARGQHVANLLAFQPEERIAQVIQIRSYE 619


>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
 gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
          Length = 863

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 341/877 (38%), Positives = 535/877 (61%), Gaps = 66/877 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + 
Sbjct: 14  EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G  ++I+NP I+   L E+I+GPDFPTG  ILGR GI+  + TGRGSI 
Sbjct: 194 IPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQILGRDGIRETFKTGRGSIT 253

Query: 250 IRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE  K++G  +++ +++TE+P+Q NKA ++E+IA+LV E+++  I+D+RDESDR
Sbjct: 254 MRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F+ FR
Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRRMLDVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +AR +L        
Sbjct: 374 VETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTISAREKLQT------ 427

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS  Q  AIL+++L RLT L  D I+ E + L  +I 
Sbjct: 428 --------------------DHELSSTQAEAILQMQLRRLTALEADKIKAEHDELTKKIN 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S+ R+  II +EL  + +   +PR+T I++    ++D D I  +  VV ++  
Sbjct: 468 QYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + +  RG +G++G   + +D V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLFSDRGVAYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+ S  A+G   + +L + + E+IT+++     +S  N+ Y++  TK G ++R  LS F
Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFDNDCYLLMLTKSGFIKRTSLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V    + + +L+ ++ G  + F   I+ +R   GR + G
Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSRTGIAIHFRLDINELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ ++L KGD ++SM ++    +D  +++  +  ++          +EI     + ++E 
Sbjct: 704 VKSMNLKKGDNLVSMDVLT---SDLVDKLAKIDDLN----------KEI-----EENIEV 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N S+           ++L  S  G GKR     FR+  R+G G+RA      +++  LV 
Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIQDDV--LVC 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  + + ++++ V++KG ++R   ++I   SRA  GV
Sbjct: 795 LKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGV 831


>gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
 gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
          Length = 837

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 349/911 (38%), Positives = 535/911 (58%), Gaps = 96/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I++EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I G+V+GKYHPHG+ A+YD + RMAQ+WSLR  L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+N DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG +++R
Sbjct: 183 PHNLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++  G +E IVVTE+PYQV+ + +L+K ++LV+E ++  I D+RDES R   R+V
Sbjct: 243 AKAEFQEVRG-KECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FS+N +AL   +PE+  L  ++  FV  R EVV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSINNIALVKGRPEQLNLKDLIYHFVEHRHEVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +A    + + + IIRF   P+                +
Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPK----------------E 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           DLI   D             L+++Q  AIL L L R+        + E      EI++  
Sbjct: 406 DLIAEFD-------------LTDIQAEAILALALRRINKALILQTKEEYEQKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++ Q ++I   +     +DE   NN Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R   GRNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRA-VGRNSQGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L                                      DTE      ND  V G I+
Sbjct: 692 IDL--------------------------------------DTE------NDEVV-GMIA 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKR-------TSSYDFRISNRSGKGIRATDVSKINEIG 839
            E       +E+ +L VSE G+GKR       T    +RI+NR GKG++   +++  + G
Sbjct: 707 IENP-----REETVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITE--KTG 759

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA+  V + + +++++  G  IR+ ++ +RI+ RAT+GV + +    + + +V ++ +
Sbjct: 760 QLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDSIAAVTKVMK 819

Query: 900 SEIVDEAESTE 910
            E  DE ++ E
Sbjct: 820 -EDDDETDAAE 829


>gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
 gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
          Length = 837

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 347/888 (39%), Positives = 521/888 (58%), Gaps = 93/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T + + +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 15  VTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDNGYRPERSYVKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   + MG YHPHG++AIYD L R+AQ WS+R  L++GQGNFGS   D  AA RYTECR+
Sbjct: 75  KPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGSRGNDGAAAMRYTECRM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TV+F+PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 135 TPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    ++DNPD +    L+A ME ++GPDFPT  +I+G  GI++ Y TGRGSI +R
Sbjct: 195 NELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDKGIQDTYRTGRGSIRMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R+ I++TE+PYQVN   ++  IAE +R+ +I  I+ + DE SDR G R+
Sbjct: 255 GVTSIEE-EGNRQVIIITELPYQVNPDNLVASIAEQIRDGKIAGISKIDDESSDRVGMRI 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + +V+V
Sbjct: 314 VITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDGVPRTLRLDQMLRHYVDHQIDVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR               L
Sbjct: 374 RRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAR-------------TGL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL+D             + EVQ   IL ++L RL  + R  I +EL  L   I +   I
Sbjct: 421 IDLLD-------------VDEVQADHILAMQLRRLAAMERQKIIDELAELEETIADLKAI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  R   I++ EL  + D+    RRT+I+    D+ +ED I RE++VVT++  GY KR
Sbjct: 468 LESPQRQRDIVRTELAEIVDKYGDERRTQIIAASGDVSEEDLIARENVVVTITSTGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR+QRRGGKG  G  ++ +D V   F+ STH ++LFF++ G VY+ + + LP  +
Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAT 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L    GE+I  ++     +S  +  Y+V AT HG V++++L+D+     
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQI---QSYEDAPYLVLATAHGRVKKSRLTDYDTARS 644

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G IA+ L+  D ++  + CT E+D+LL ++ GQ +RF      +R   GR + GV+G+ 
Sbjct: 645 GGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDETLRPM-GRATAGVKGMR 703

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + DQ++++ +V                                    DSS+       
Sbjct: 704 FREEDQLLALTVV----------------------------------AEDSSL------- 722

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F+ T    G+GKRT   ++    R G G+ A    K  + G L+    VN
Sbjct: 723 ----------FVATSG--GYGKRTPMEEYPTKGRGGLGVVAFKYDK--KRGKLIGALTVN 768

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           D+D+I+ ++  G +IR  V++IR + RAT GV +   AK   +V+V+R
Sbjct: 769 DDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDLAKGNELVAVDR 816


>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 867

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 347/905 (38%), Positives = 534/905 (59%), Gaps = 67/905 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + Y KCA
Sbjct: 19  IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 139 QSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNGSSGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG  A+I NP  +   L E+I+GPDFPTG  ILGR GIK  + +G+GSI +RGV+
Sbjct: 199 LGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQILGRDGIKETFKSGKGSITMRGVA 258

Query: 255 HIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE  K+ G  +++ +++TE+P+Q NKAA++E+IA+LV EKR+  I+D+RDESDR G R+
Sbjct: 259 DIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRLDGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   +L  +L  F+ FR E + 
Sbjct: 319 VIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGEPTTLSLRKMLDVFLEFRIETIK 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT +LL KA +R H++ GL +A+  +D ++ +IR + +  +AR +L             
Sbjct: 379 RRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNSAREQLQN----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS +Q  AIL+++L RLT L  D I++E + L  +I +  +I
Sbjct: 428 ---------------DHELSVIQADAILQMQLRRLTALEADKIKSEHDELTKKITDYKNI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ + R+  II +EL  + +   +PR+T I+     ++D D I  E  VV ++  GY+KR
Sbjct: 473 LNDKERINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDLIANERSVVLLTTAGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + +  RG +G++G   + +D V      + H ++L FS  G  Y    +R+P+ S
Sbjct: 533 MPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G   + +L + + E+IT+++     +S  N  Y++  TK G ++R  LS F ++  
Sbjct: 593 RTAKGTPSVQLLPIPREEQITSLVSV---DSFDNECYLLMLTKAGFIKRTPLSAFSKVRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D +  V   T+ + +L+ +  G  + F +    +   GR + GV+ ++L
Sbjct: 650 NGLIAINLEEGDALTWVRLSTEGDSVLIGSSRGMTIHFRLDTNELRPLGRTARGVKSMNL 709

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+++SM ++           C +    A       + E    L++ SS         
Sbjct: 710 KEGDKLVSMDVL----------SCDLVDQLANLEEEDIENENEEDLESKSS--------- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    +IL  S  G GKR     FR+  R+G G+RA      ++  +LV +  + +
Sbjct: 751 ------NGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRAIKFRIKDD--SLVGLKVLGE 802

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-----ERIRESEIVD 904
            ++++LV+++G ++R   ++I   SRA  GV +      + +  V     E+I E +++ 
Sbjct: 803 GEELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPHEQIEEDQLIS 862

Query: 905 EAEST 909
             E T
Sbjct: 863 NEEET 867


>gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 844

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 355/890 (39%), Positives = 512/890 (57%), Gaps = 87/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   + G+  +K Y K A
Sbjct: 25  IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD  AA RYTE RL
Sbjct: 85  RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV     A   N DI +  +ME ++GPDFPTGA I G +GI N + TGRGS+ IR    
Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIRSKYE 264

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R  IVVTEIPY VNK  ++EKI ELV  K+I  I+DLRDES R G R+VIE+K
Sbjct: 265 IEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEVK 324

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LN+L++ T+LQ+ FSVN +AL    P    +  ++K +   + EV+VRRTK+
Sbjct: 325 RDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVRRTKF 384

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R               
Sbjct: 385 DLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR--------------- 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+QT+AILE+RL  LTGL  D ++ E   L + I++  DIL +  
Sbjct: 430 -----------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIEDLEDILENYD 478

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II + L  + ++    RRT I+ G+   ++DED I  ED+VVT+S  GY KR+P+ 
Sbjct: 479 RQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPID 538

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+ +   +P+GS Q++
Sbjct: 539 TYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSK 598

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN L + + E I TI+P   D     +L+  F T  G ++R  LSDF  I  +GKI
Sbjct: 599 GIPAINFLPIEKSESILTILPI--DNYEQGSLF--FTTSKGIIKRANLSDFESIRANGKI 654

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++ SV      +++ +    G  +RF  +  R   GR + GV+GI+L   + 
Sbjct: 655 AITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLEDDEY 713

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +  H +                                                 
Sbjct: 714 VVGTGLSSHGE------------------------------------------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               ++L V  KG GK T   D+R++ R  KG+    V+  +  G LV++  VN +++ +
Sbjct: 725 ----YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DRTGNLVSIKVVNRDEEAL 778

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++  G +IR+ + +I +  R T GV + S    E V S+   ++ EI D
Sbjct: 779 IITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDD 828


>gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F]
          Length = 846

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 342/881 (38%), Positives = 523/881 (59%), Gaps = 88/881 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 78  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+  AH++ GL IA  N+D+V+ II+ + + E A+  LM +               
Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTKYE------------- 424

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL  L+GL R++++ EL  L   IK+  +IL ++ 
Sbjct: 425 -------------LSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II  +L  +  +    RRT+I  GL   +++E  I  E +V+T S  GY+KR+P+S
Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G  G+   ++D V  L + STH+ +LFF++ G VY+ +  ++P+GS  ++
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN++S+ + E++ +++      + +++ Y  F+TK G V+R K S+F +I  +GKI
Sbjct: 592 GIPAINLISIEKDEKLMSLLSI----NDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733
           A+KL   D +  V     + +I +    G  VRF    +R   GR + GV G+      D
Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI ++                                       SS EG++        
Sbjct: 707 EVIGLS---------------------------------------SSHEGSL-------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V EKG GK T   ++R++NR  KG+    V+   + G ++    VN N+++
Sbjct: 720 ------LLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++S  G ++RVP+ E+    R T GV + S  + E + SV
Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSV 812



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T S KG+ KR     +++ +R G G++  +  + +++ +L+     +D   ++  
Sbjct: 513 ETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSD---LLFF 569

Query: 857 SDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
           ++ G + R+  +++ + SR +KG+    + S  KDE+++S+  I +
Sbjct: 570 TNYGKVYRIRAHQVPLGSRISKGIPAINLISIEKDEKLMSLLSIND 615


>gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
 gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
          Length = 824

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 357/891 (40%), Positives = 515/891 (57%), Gaps = 88/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MG 64
           ++S+E       S++I DEM+N ++ YA++VI+GRAIPD+RDGLKPVHRRIL+ M    G
Sbjct: 1   MTSEENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              +K Y K A+     MG YHPHG++AIYD L +MAQ +S R  L++GQGNFGS+DGD 
Sbjct: 61  NTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL KAA  LL+D+ K+TVDF PN+D S QEP VL +R PN+LVNG  GIAV
Sbjct: 121 AAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNLGEV D   A IDNP++ L+ +M+I+  PDFPTG  I+G  GI NAY TG
Sbjct: 181 GMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGTDGIVNAYQTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G +V+RG++ IE+     EQIV+TEIPYQVNKAAM+EKIA+LV+ K I  I+D+RDESD
Sbjct: 241 QGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G RV+IELK+   A+V+LN LY++T L+S F +  +A+   KP+  +L  +L+ F+A 
Sbjct: 301 KDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVDKKPKILSLAELLRHFIAH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+ + L KA +R H+L GL  A+  +D V+  IR SP    A+  L+ +    
Sbjct: 361 RVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSK---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 +  SE Q  AIL+++L RL  L +  I +E  SL + I
Sbjct: 417 ----------------------LGFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVS 543
            +   ILSS   +L ++K E   ++      RRT+I      D    D I  E  +V ++
Sbjct: 455 DKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMDLIPDEQTLVMLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
              Y+KRVPL +YR Q+RGG+G  G+  +DED V  +F+ +TH  +L F++ G VY  +V
Sbjct: 515 TQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRV 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P GS  ++GKA++N+L+L   E ++ ++P  + ++  N LY   ATK G V +    
Sbjct: 575 YEIPEGSRTSKGKAIVNLLNLTD-EEVSAVIPMRDFDAEKNLLY---ATKKGRVGKFSQD 630

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G I + L   DE++ V       D++LTT  GQ +RF    +R   GR + G
Sbjct: 631 LFSRPRTGGIIGITLLDGDELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRA-TGRGTQG 689

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI              L  + DY                                   
Sbjct: 690 VIGIR-------------LKFEGDY----------------------------------- 701

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                 C    ++ Q++L +++KGFGKRT   +FR   R  +G+++  +    E G +V+
Sbjct: 702 -----VCALTLVETQYLLMITDKGFGKRTEFEEFRGHGRGTQGVKS--IVANFERGKVVS 754

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              V+D+DQ+I+ +  G ++R   ++I I  R TKGV +      ++V SV
Sbjct: 755 SLAVSDDDQVIITTAGGVVLRTSASDISIQGRGTKGVRVIRVDSGDKVTSV 805


>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
 gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
          Length = 882

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 356/877 (40%), Positives = 527/877 (60%), Gaps = 61/877 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + DEM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 9   ESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLSSDRP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 69  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDSDPPAAMRY 128

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ  A   LL+D+  +TVDF  N+DGS QEP V+ AR P++L+NG  GIAVGMATN
Sbjct: 129 TESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D  +A+I +P+I   AL+ I+ GPDFPTG  ILGR GI+ AY TGRGS+ 
Sbjct: 189 IPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQILGRKGIREAYTTGRGSVT 248

Query: 250 IRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE    +   DR+ +++TE+PYQ NKA+++E+IAELV +K++  I+D+RDESDR
Sbjct: 249 MRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDGISDIRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V EL+R A   V+LN L++ T LQS FS +++AL   +P   TL  +L  F+ FR
Sbjct: 309 DGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGEPVLLTLRQMLHVFLDFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H L+GL +A+  LD ++ +IR + +  TAR +L        
Sbjct: 369 IETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARYQL-------- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                        Y  G      LSE+Q  AIL+++L RLT L  D IR E   L  ++ 
Sbjct: 421 ------------QYFHG------LSEIQADAILQMQLRRLTALEADKIRFEHEDLVQKVN 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL+ R R+L +IK+EL  + +  ++PRRT+I++    +ED D I  E  VV ++  
Sbjct: 463 NYRDILAHRDRVLELIKEELKLLHNRYNSPRRTKILDLEGSLEDIDLIANERSVVLLTEN 522

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + ++ V      + H ++L FS  G  Y    +R
Sbjct: 523 GYLKRMPVSEFEATNRGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYR 582

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+ S  A+G  ++ IL + + E IT+++     E   N + ++  T  G ++R +LS F
Sbjct: 583 VPVSSRSAKGTPVVQILPIPREEEITSLLSVSAFE---NEVQLLMLTNSGFIKRTRLSAF 639

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723
             I  +G IA+ L+  D +  V      + +L+ +  G  + F I    +R   GRN+ G
Sbjct: 640 SNIRSNGLIAINLELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEELRPL-GRNARG 698

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR ++L   D ++SM ++    A+  +++        + R      EE+      +S   
Sbjct: 699 VRAMNLRDNDSLVSMDVL---PAELADQVANSVDSGVEER------EELGGGTGSASPAA 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L  S  G GKR     FR+  R+G G+RA    +  ++  LV 
Sbjct: 750 G-------------PWVLVASASGLGKRVPVNQFRLQRRAGMGLRAMRFRRKGDV--LVG 794

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  +   ++++LVS+KG ++R+  + I   SRA  GV
Sbjct: 795 LKVLGSREELLLVSEKGVIVRMQADLIPQQSRAATGV 831



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF-PVNDN 850
           +L   E+ ++ ++E G+ KR    +F  +NR  +G   T     N+    V +F   ND+
Sbjct: 508 DLIANERSVVLLTENGYLKRMPVSEFEATNRGTRGKAGTK----NQGDEGVKLFISCNDH 563

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           D ++L SD+G    +P   + ++SR+ KG   V I    ++E + S+
Sbjct: 564 DTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQILPIPREEEITSL 610



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 11/113 (9%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +V + S LG  KRVP++ +R QRR G G R+    R  D +  L ++ +   +L  S  G
Sbjct: 754 LVASASGLG--KRVPVNQFRLQRRAGMGLRAMRFRRKGDVLVGLKVLGSREELLLVSEKG 811

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-----EDESSWN 644
            + + +   +P    Q+R    + +  L+ G+ +  I+  P     ED+ + N
Sbjct: 812 VIVRMQADLIP---QQSRAATGVRLQKLDDGDHLAEIVLIPHVLEEEDDPNVN 861


>gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833]
 gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833]
          Length = 834

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 347/893 (38%), Positives = 514/893 (57%), Gaps = 93/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G   ++ Y K +
Sbjct: 15  IEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMFEGGYRPDRGYFKSS 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG YHPHG+A+IYD + R+AQ WSLR  L++GQGNFGS   DP AA RYTE R+
Sbjct: 75  RIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTESRM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ KDTVDF+PNYDG  +EPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 APIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E  +     +++P++     L+ L+E I+GPDFPTGA+I+GR GI+ AY TGRGSI++R
Sbjct: 195 RETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIVGRRGIEEAYRTGRGSIIMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+ +  R+ +VVTE+PY VN   +   IAELVRE +I  IAD+RDE S R G R+
Sbjct: 255 AVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGIADVRDESSSRTGQRL 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A   V+LN LY++T LQ+ F  NM+AL    P    L   ++ ++  + +VVV
Sbjct: 315 VIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVDGVPRTLRLDQFVRHYIRHQIDVVV 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++LL KA +RAH+L GL  A+  +DEV+ +IR SP+   A+  LM            
Sbjct: 375 RRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQTGLM------------ 422

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + EVQ +AIL+++L +L  L R  I++E + L  +I +  DI
Sbjct: 423 --------------ALLEIDEVQAQAILDMQLRKLAALERQQIQDEYDGLMAQIADYNDI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  R   ++ +EL  +  +    RRT+I     DM +ED I  ED+VVT++  GY KR
Sbjct: 469 LGSEMRQRRLVSEELGEIIAKYGDERRTKITAYEGDMSEEDLIAEEDVVVTITRGGYAKR 528

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YRAQRRGGKG  G  +R +D V   F+ STH  +L F++ G VY+ K + LP  +
Sbjct: 529 TSIDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNKGRVYRFKAYELPEAA 588

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG+ L N+L++   E +  I+     DE+     Y+V AT+ G V++ +L+++    
Sbjct: 589 RDARGQHLANLLAMQPDEHVMEILSLRNYDEAP----YLVLATRSGMVKKTRLAEYDSPR 644

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
             G IA+ L   DE+++    ++E+D+LL +K  Q +RF  +   +R   GR + GV G+
Sbjct: 645 SGGLIAINLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVLRPM-GRATAGVIGM 703

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             A+GD++++M ++   D +                                        
Sbjct: 704 RFAEGDELLAMEVIRDGDEE---------------------------------------- 723

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L  +E G+ KRT +  + +  R GKG+    +  +   G L+    V
Sbjct: 724 ------------VLVATEGGYAKRTPADQYPVQGRGGKGVLTAKI--VQSRGKLIGAIMV 769

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              D++  ++  G +IR    EI+ + R T GV +   ++ + +V++ R  ES
Sbjct: 770 RPEDEVFAITSNGGVIRTRAAEIKRSGRQTMGVRLMHLSEGDSLVALARNAES 822


>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 875

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 354/886 (39%), Positives = 533/886 (60%), Gaps = 70/886 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE      +E E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M 
Sbjct: 8   TEPTGGVPDELEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 67

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNFGS+D
Sbjct: 68  ELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSID 127

Query: 122 GDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  
Sbjct: 128 NDPPAAMRYTESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSS 187

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE++DG +A+I NPD++   +M+II GPDFPTG  ILGR+GI+  
Sbjct: 188 GIAVGMATNIPPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQILGRSGIRET 247

Query: 241 YATGRGSIVIRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           Y +GRGS+ +RGV+ IE        DR+ I++T++PYQ NKAA++E+IA +V +K++  I
Sbjct: 248 YLSGRGSVTMRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKKLEGI 307

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +D+RDESDR G R+V+EL+R +   V+LN L++ T LQS FS NM+AL   +P   +L+ 
Sbjct: 308 SDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPITLSLLR 367

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L  F+ FR   + +RTKYLL KA +R H+L+GL +A+  LDE++ +IR + +   A+++
Sbjct: 368 MLNVFLDFRVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSVAKKQ 427

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L +                             L++VQ  AIL+++L RLT L  D IR E
Sbjct: 428 LQE--------------------------IHGLTDVQADAILQMQLRRLTALESDKIRLE 461

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L ++I +  DILS++SR+  IIK EL+S+K++    RRT I++    +ED D I  E
Sbjct: 462 HEDLLVKISDFKDILSNKSRVYEIIKTELISIKEKFPQVRRTEILDLGSGLEDIDLIANE 521

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             VV ++  GY+KR+P++ + A  RG +G+SG   + E+ V      + H ++L FS  G
Sbjct: 522 RSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLFSVRG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y    +R+P  S  A+G  ++ +L + + E IT+++      S  ++ Y++  T  G 
Sbjct: 582 VSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSLISV---SSFDDDNYLLMLTIGGF 638

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIR 714
           ++R  +S F +I  +G I++ L+  D +  V   +  + +L+ +K G  + F +  + +R
Sbjct: 639 IKRTPVSAFSKIRANGLISINLEDGDALRWVRLASSADSVLIGSKAGMTIHFRLNDNELR 698

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVR ++L  GD ++SM ++    AD                        I S
Sbjct: 699 PL-GRTARGVRSMNLRDGDSLVSMDVLSKELAD-----------------------RIAS 734

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
             +D ++  N   E          +IL  S  G GKR     FR+  RSG G+RA     
Sbjct: 735 TNDDEAINSNGQYE--------GPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFR- 785

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            ++   LV +  ++  ++++LVS+KG ++R   ++I   SRA  GV
Sbjct: 786 -SDTDELVGLKVLDKGEEVLLVSEKGVIVRTSADKISQQSRAATGV 830



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+ ++ ++E G+ KR    +F  ++R  +G   T      E+   ++    ND+D
Sbjct: 516 DLIANERSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISC---NDHD 572

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
            ++L S +G    VP   +   SRA KG   V +    ++E + S+
Sbjct: 573 NLLLFSVRGVSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSL 618


>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
 gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
          Length = 865

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 359/902 (39%), Positives = 525/902 (58%), Gaps = 73/902 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 19  IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 139 RALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG  A+I NP+I    L+++I GPDFPTG  ILGR GI+  Y  GRGS+ +RGV+
Sbjct: 199 LNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREGIRETYLGGRGSVTMRGVA 258

Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +IE        DR+ +++TE+PYQ NKAA++E+IAELV +K++  I+D+RDESDR G R+
Sbjct: 259 NIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETIE 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L  R          
Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHG-------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 431 ------------------LSDIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+ GII+ EL  +++   TPRRT I++    + D D I  E  VV ++  GY+KR
Sbjct: 473 LGRRERVFGIIQSELAQLQERYPTPRRTEILDLGGGLSDIDLIANERSVVLLTETGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + ED V      + H +++ FS  G  Y    +R+P  S
Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E ITT++P  E     +   +V  T+ G ++R +LS F  I  
Sbjct: 593 RAAKGTPVVQLLPIPREEAITTLIPVSEFSDDTD---LVMLTRGGFIKRTRLSAFSNIRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ +K G  + F +S   +R   GR + GVR ++
Sbjct: 650 NGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSDEELRPL-GRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D ++SM ++    AD                                  +   S +
Sbjct: 709 LRDADALVSMDVLPVELAD----------------------------------QVAASAD 734

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +   +  ++L  S  G GKR     FR+  R+G G+RA       +   LV +  + 
Sbjct: 735 DEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVGLSVLG 792

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             ++++LVS+KG ++R   + I   SRA  GV +    K +R++ V  +      D A+ 
Sbjct: 793 AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDDSADD 852

Query: 909 TE 910
           TE
Sbjct: 853 TE 854


>gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
 gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A]
 gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
 gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A]
 gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
          Length = 883

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 353/898 (39%), Positives = 514/898 (57%), Gaps = 95/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 40  IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM            
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +DI
Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFAPDESIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F     ++   GR + G
Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V   D+D D                                  
Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G GI+A  V  +   GALV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 17/233 (7%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  DE++++   +++ D   T  +G      + A  + A    + +R ++    D++++
Sbjct: 422 LDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILA----MQLRTLTRMNRDKIVA 477

Query: 738 MAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQEL 793
               L    ADY   I  +     QR++I  + +EI +   D   + +     E   ++L
Sbjct: 478 EHEELQRKIADY---IDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDL 534

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E  ++TV+  GF KRT + ++R  +R GKGI+ T   K+ E   +   F  + ++ +
Sbjct: 535 IAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGT---KLREDDVVDHFFLTSTHNWL 591

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +  ++KG + R+   E+   SR +KG     +   A DE + +V  I   E+ 
Sbjct: 592 LFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVA 644


>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
 gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 881

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 349/878 (39%), Positives = 534/878 (60%), Gaps = 63/878 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  EFEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ L++G GNFGS+D DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNFGSIDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G +A+I NP++  + L +II+GPDFPTG  ILGR GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQILGRNGIQETYLTGRGSVT 253

Query: 250 IRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE  + +G  DR+ +++T++PYQ NKAA++E+IA++V +K++  I+D+RDESDR
Sbjct: 254 MRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R +   V+LN L++ T LQS FS NM+AL   +P   +L+ +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPVTLSLLRMLQVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT YLL KA +R H+L+GL +A+  LD ++ +IR + +   A+ +L +      
Sbjct: 374 VETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSVAKAKLQE------ 427

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+EVQ  AIL+++L RLT L  D IR E   L   I 
Sbjct: 428 --------------------LHRLTEVQADAILQMQLRRLTALEADKIRLEHEDLLKRIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL+++ R+  +IK+EL+ +K++ + PRRT I++    ++D D I  E  VV ++  
Sbjct: 468 DFQDILANKPRVFDLIKKELIQLKEKYEAPRRTEILDLGGGIDDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + A  RG +G+SG   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNQFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLFSDRGVAYSLPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +PI S  A+G  ++ +L + + E IT+++      S  ++ +++  TK G ++R  +S F
Sbjct: 588 VPISSRSAKGTPVVQLLPIPREEAITSLLSV---SSFDDDNHLLMLTKGGYIKRTLVSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V      + +L+ ++ G  + F ++   +R   GR + G
Sbjct: 645 SKIRANGLIAISLEDGDALTWVRLAASGDSVLIGSRKGMTIHFRLNDDELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR ++L KGD ++ M ++    AD                        I    ND S   
Sbjct: 704 VRSMNLRKGDSLVGMDVLPRELAD-----------------------RIAGTNNDDSDSD 740

Query: 784 NISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           + S+    E+ + E  ++L  S  G GKR     FR+  R+G G+RA      N+  +LV
Sbjct: 741 SDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFR--NDGDSLV 798

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            +  +   ++++ V++KG ++R   ++I   SRA  GV
Sbjct: 799 GLKVLGHGEELLFVTEKGIIVRTSADKISQQSRAATGV 836


>gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 849

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 334/721 (46%), Positives = 477/721 (66%), Gaps = 29/721 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A+++ + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLSHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+               
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTR------------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
              LID  S          LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 410 ---LIDGYS----------LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT +  G + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++     E+  +  Y+ F T+ G V+R  +++F  I
Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINV-RGEAGESKDYLFFVTRLGVVKRTAVNEFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       IL+ TK G  VRF    +R+  GR++ GVRGI 
Sbjct: 636 RTNGLRALTLRDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIM-GRSAAGVRGIR 694

Query: 729 L 729
           L
Sbjct: 695 L 695



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 25/246 (10%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SVETCTQENDILLTTKLGQ 704
           +V  T++G ++R   ++F   NR G+    ++  DE      V T T +  +  T K G+
Sbjct: 507 IVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNK-GK 565

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAIVLHADA-DYDERICYMKHMSAQ 761
             R     +  + GR + G+  ++L K  GD+ I   I +  +A +  + + ++  +   
Sbjct: 566 VYRMKGYEVPEY-GRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKDYLFFVTRLGVV 624

Query: 762 RRLISGDTEEI-------TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +R    +   I        +L++D  V          ++    Q IL  ++ G+  R + 
Sbjct: 625 KRTAVNEFSNIRTNGLRALTLRDDDEV-------LSVQITDGTQSILIATKDGYSVRFTE 677

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D RI  RS  G+R     ++ +   +V    VN ND ++++++KG   + PV+E  I  
Sbjct: 678 DDVRIMGRSAAGVRGI---RLRDGDVVVGSDVVNPNDNVLVITEKGYGKQTPVSEYPIKG 734

Query: 875 RATKGV 880
           R  KG+
Sbjct: 735 RGGKGI 740



 Score = 44.7 bits (104), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           I+T++  G+ KR    +F+  NR G+G++  +V+  + +  +VA    + +D ++  ++K
Sbjct: 507 IVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVA---TSTHDTLLFFTNK 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIR 898
           G + R+   E+    R  KG+ + +  K   DE++ +V  +R
Sbjct: 564 GKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGDEKIQTVINVR 605



 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 15/213 (7%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D +  V+ LG VKR  ++ +   R    G   + +RD+D V  + I     S+L  +  
Sbjct: 612 KDYLFFVTRLGVVKRTAVNEFSNIRT--NGLRALTLRDDDEVLSVQITDGTQSILIATKD 669

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+  +     + I    A G          +G R+         +    N  V+  T+ G
Sbjct: 670 GYSVRFTEDDVRIMGRSAAGV---------RGIRLRDGDVVVGSDVVNPNDNVLVITEKG 720

Query: 656 NVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISA 712
             ++  +S++    R GK    + +  ++  L+  T    + DI++TT  G  +RF  S+
Sbjct: 721 YGKQTPVSEYPIKGRGGKGIKTVNITEKNGALAGMTIIHGDEDIMVTTTQGVMIRFTASS 780

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +    GR ++GVR I L  G +V ++A V H +
Sbjct: 781 VSQ-TGRATLGVRLIRLEDGAKVATLAKVDHEE 812


>gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286]
 gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286]
          Length = 819

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 358/882 (40%), Positives = 511/882 (57%), Gaps = 93/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV     + K +
Sbjct: 17  VDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MG YHPHG++AIYD L RMAQ +S+R  L++GQGNFGS+DGDP AA RYTE R+
Sbjct: 77  SIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGSMDGDPAAAMRYTEARM 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LL D+ KDTVDF+ NYD   +EP VL +  PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 137 SPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGSSGIAVGMSTNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V +IDNPD +++ LM+ ++GPDFPTG  I+G+  I +AYATGRG + +R    
Sbjct: 197 GEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIVGKDAIYSAYATGRGRLRVRADYE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           ++    +  +IVVTEIPYQ NKA M+E+IAE V E  I  IADLRDESDR G R+V+ELK
Sbjct: 257 VDP---EENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADLRDESDRNGVRIVVELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+ NQL   + L+S F V  +AL   +P   TL   L+ +VA R+EVV RR+++
Sbjct: 314 RGANVDVVENQLLE-SHLESTFGVINLALVDDEPRVLTLKETLEHYVAHRKEVVRRRSQF 372

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L++A+DRAH+L G   A+ N+D+VV +I+ S + + AR EL  +               
Sbjct: 373 ELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRSQ--------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q   I+ ++L  LT +   +I +E   +   I+    IL S  
Sbjct: 418 -----------FDFSEEQAAHIVRMQLGSLTSMETAEIESEYEDVQARIERLQTILDSED 466

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            LL +IK EL  +K E D  R+T I+E   ++  ED I  ED VV ++   Y+KR+P+  
Sbjct: 467 ELLTVIKDELREIKAEYDDDRKTSILEAEGEVTHEDLIPEEDCVVVITEDDYIKRMPVDA 526

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + AQ RGGKG  G   +D D V+ +F  ++H  +L F++ G VY+ K + +P  S  ARG
Sbjct: 527 FDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 586

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           K+ +NI+ L   E IT ++    F EDE       +   T++G V+R  + +F  I  +G
Sbjct: 587 KSAVNIIDLGDDEEITAVVSTDDFEEDEC------LTMVTRNGYVKRTCVDEFENILSTG 640

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA KL+  D ++ VE      D+++ T+ G  +RF  S +R   GR++ GVRGI L  G
Sbjct: 641 IIAAKLEDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREM-GRSARGVRGIDLQDG 699

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V +M     A  D+D+R                                         
Sbjct: 700 DKVAAMV----ATDDHDDRA---------------------------------------- 715

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTV+E G+GKRT   ++   +R GKG+   D+   +  G +     V ++D 
Sbjct: 716 -------LLTVTENGYGKRTLLAEYSKQSRYGKGL--IDIKTDDRNGRVATAKAVREDDH 766

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++++S+ G ++R+P  ++    R TKGV I +    + V SV
Sbjct: 767 LVIMSESGQIMRIPAGDVSQVGRNTKGVKIMALDGVDNVASV 808


>gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 873

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 363/922 (39%), Positives = 531/922 (57%), Gaps = 99/922 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           + E  + + E E   I  V I  EMQNSYL YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 15  VAETTLVAAEAEAGRINYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAM 74

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   N  + KC R+ G+V+ K+HPHG+ A+YDALAR+ Q WSLR  LI GQGNFGS 
Sbjct: 75  YDGGFRPNAGFYKCMRVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSP 134

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
               PAA RYTEC++   A  ++ D+ ++TVDF  NYDG  QEPVVL AR+PN+LVNG  
Sbjct: 135 GNLGPAAPRYTECKMAPLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSE 194

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV +G    +D+P+      L+AL+ I++GPDFPTGA ILG+T 
Sbjct: 195 GIAVGMATRIPPHNLREVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATILGKTA 254

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+  Y TGRGSI+ R V +IE+   +R+ +VVTE PYQVN   +  KIA+LV++  +  I
Sbjct: 255 IEQVYRTGRGSIIQRAVVNIEEIQ-NRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGI 313

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE SDR G R+VI LKR A A V+LN LY+ T LQS F  NM+AL    P   +L 
Sbjct: 314 ADIRDETSDRSGQRLVIVLKRDAVAKVVLNNLYKRTDLQSSFPANMLALVDGVPRTLSLD 373

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G +  +V  + EV++RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR 
Sbjct: 374 GFVHYWVKHQVEVIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARV 433

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM          DL+                 + EVQ  AIL ++L RL  L R  I +
Sbjct: 434 GLM----------DLLK----------------IDEVQADAILAMQLRRLAALERQKILD 467

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++++  DI+++ +R   I+ +EL  + +     RRT IV    +M DED I  
Sbjct: 468 EHAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFGDERRTAIVPFNGEMTDEDLIPE 527

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ RGGKG  G  +R +D V   F+ +TH  +LFF++L
Sbjct: 528 EEVVVTITRDGYAKRTRVDNYKAQHRGGKGVRGAKLRQDDVVEHFFVTTTHHWLLFFTNL 587

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P G   +RG+ + N+L+    E I+ ++   + E +    Y+V ATK G
Sbjct: 588 GRVYRAKGYEIPEGGRDSRGQHVANLLAFQPDEAISQVLAIRDYEQAQ---YLVLATKSG 644

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++  L+D+      G IA+ L        DE++S      E+D++L +  GQ +RF  
Sbjct: 645 LVKKTALADYNSPRSGGLIAINLRETEDGQVDELVSAALVNAEDDLILVSCGGQSLRFNC 704

Query: 711 S--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +  A+R   GR++ GVRG+   + D +++M ++ H D+D                     
Sbjct: 705 TDEAVRPM-GRSTSGVRGMRFREDDALLTMEVIEH-DSD--------------------- 741

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +L V+E GF KR++   + +  R G G++
Sbjct: 742 -------------------------------LLVVTEGGFAKRSAIDTYPVRGRGGLGVK 770

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++  + + G LV    V++ D+++++ + G ++R+PV EI    R T+GV      + 
Sbjct: 771 VANL--VEDRGGLVGALKVHEEDEVLVIMESGNIVRIPVAEISRTGRTTQGVTFARPNEG 828

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           +R+++V R  E+ + D+AE  E
Sbjct: 829 DRIIAVARNLETSL-DDAEEAE 849


>gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 873

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 355/894 (39%), Positives = 524/894 (58%), Gaps = 73/894 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V +  E+  S+L Y+++VI+ RA+PD+RDGLKP  RRIL+ M ++ +    K 
Sbjct: 2   ENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKT 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC++I G+ MG YHPHG+AAIY  L  MAQDWS+R +L+ GQGNFG+ DGDPPAA RYT
Sbjct: 62  RKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L      L+ DL KDTVDF P YD    EP V  + +PN+LVNGG GIAVGMATN+P
Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG  AVIDNP + ++ L + I+GPDFPTG  +LG +GI N + TGRGS+ IR
Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E T   ++ +++ E+PY VN+AA+ E+IAEL ++K + DI+ +RD SD +   + 
Sbjct: 242 GKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTC-IE 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A   V++NQLY+ TS+++ F+VNM+A++  +P+   ++  +  ++  R EVVVR
Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+YLL  A   A  L    +A+ ++D+ + IIR S N + AR  L   +++    + L 
Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLG 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI  S  +I  D  ++ +E Q  +IL+LRL +LT L  D I  E   L + IK+ LDIL
Sbjct: 421 ILI-RSQASIQGDRYVF-TERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDIL 478

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++ SR+LGI+K EL ++KD+  TPR TRI+    DM  ED I  + M+VT++H GY+KR 
Sbjct: 479 ANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTITHSGYIKRT 538

Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             + YR Q RGGKG      R      + DF+  LF    H  ++FF++ G VY ++V+ 
Sbjct: 539 NSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVDRVYE 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLY------VVFATKHGNV 657
           +   +  A+G+ + N+L L   E I  I+      DE   +  +      VVFATK G V
Sbjct: 599 IDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATKDGTV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+DF    ++G IA+ L+  + +++ E  +  ++I+L T  G  +RFP   +R   
Sbjct: 659 KKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPEEDLRT-Q 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN++GVRGI    GD V+++AIV                   Q+ L             
Sbjct: 718 GRNTIGVRGIRPRAGDYVVALAIV-----------------DPQKTL------------- 747

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                  L  SE G GKRTS  ++R   R G GI+  + +  ++
Sbjct: 748 -----------------------LVASENGLGKRTSFDEYRTQGRGGTGIKTMNCT--DK 782

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            G +V+   V+D D+++L++  G  +R+ V  +R   RAT+GV + +  + E +
Sbjct: 783 TGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLNEGESI 836


>gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 869

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 367/914 (40%), Positives = 529/914 (57%), Gaps = 102/914 (11%)

Query: 3   EHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           E+  ++ E++ +G T     V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+
Sbjct: 4   ENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLY 63

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFG
Sbjct: 64  AMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFG 123

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S   DP AA RYTEC++   +  ++ D+ +DTVDF+ NYDG  QEP VL AR+PN+L+NG
Sbjct: 124 SPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLLING 183

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGR 234
             GIAVGMATNIP HNL EV +G    + NP+      LDAL++ I+GPDFPTGA+++GR
Sbjct: 184 SAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALVVGR 243

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI+ AY TGRGSI +R V  +E+  G R+ +VVTE+PYQVN   + +KIA+LV+E RI 
Sbjct: 244 KGIEEAYRTGRGSITMRAVVEVEEIQG-RQCLVVTELPYQVNPDNLAQKIADLVKEARIG 302

Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +
Sbjct: 303 GIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLS 362

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E A
Sbjct: 363 LDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIA 422

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM          DL                + + E+Q  AILE++L RL  L R  I
Sbjct: 423 RGGLM----------DL----------------LTIDEIQANAILEMQLRRLAALERQKI 456

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E + L  +I E   IL+S  R   II +EL ++ ++    RRT+++    DM  ED I
Sbjct: 457 IQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYGDDRRTKLIPFDGDMSIEDLI 516

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF+
Sbjct: 517 AEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + LP    +ARG+ + N+L+    E+I  I+   + E++    Y+V ATK
Sbjct: 577 NKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAA---PYLVLATK 633

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRF 708
            G V++  L D+      G IA+ L    D R DE++  E  + ++D+LL +K  Q +RF
Sbjct: 634 SGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQSIRF 693

Query: 709 PIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             +  ++R   GR + GV+G+S  +GD+++SM +V                         
Sbjct: 694 TATDESLRPM-GRATSGVKGMSFREGDELLSMNVVRPG---------------------- 730

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
             T   T+     +   N+ E R Q                              R G G
Sbjct: 731 --TFVFTATDGGYAKRTNVDEYRVQ-----------------------------GRGGLG 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+A  +  + + G+LV    V ++D+I+ ++  G +IR  VNE+R   R T GV + +  
Sbjct: 760 IKAAKI--VEDRGSLVGALVVEESDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLG 817

Query: 887 KDERVVSVERIRES 900
           K + VV + R  E+
Sbjct: 818 KRDAVVGIARNAEA 831


>gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
          Length = 803

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 348/839 (41%), Positives = 506/839 (60%), Gaps = 87/839 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  LI+GQGNFGS
Sbjct: 1   MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R  K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG 
Sbjct: 61  VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT IP HNL E++D  + ++DNP+   D LME I+GPDFPTG  I GR GI +
Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIID 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + IR   HIE T G +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++
Sbjct: 181 AYNTGRGRVRIRAKHHIE-TRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEV 239

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELK+ A +++++N LY+ T +++ F + ++A+   +P+ FTL  +L 
Sbjct: 240 RDESDRDGIRVVIELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLN 299

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F++ R+ V++RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  
Sbjct: 300 VFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLEL 359

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS +Q++AIL++RL RLTGL RD +  E   
Sbjct: 360 R--------------------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQE 393

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL S  +L+ IIK+EL  ++++  + R T I +   +++ ED I  E MV
Sbjct: 394 LMAIIAELESILKSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMV 453

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++H GYVKRVP+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y
Sbjct: 454 VTITHNGYVKRVPIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLY 513

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVR 658
             KV+R+P GS  A+GKA++N+++L   E+I  I+P  + DES      + F T++G V+
Sbjct: 514 WLKVYRIPEGSRTAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS----LAFFTRNGVVK 569

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
           R  LS+F  I  +G  A+ LD  DEI++ +  T     L+  T LGQC+RF +   R   
Sbjct: 570 RTSLSEFSNIRSNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-Q 628

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRGI                            KH          DT+ +     
Sbjct: 629 GRSTRGVRGIKF--------------------------KH----------DTDFVV---- 648

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++V  NI           EQ +LTVS+KG GKRT+  ++R +NR+G G+ +  +S   +
Sbjct: 649 DANVVDNI-----------EQELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--K 695

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G +V    V++   +++++  G +IRV +  IR A R T GV+I +    ++VVS+ +
Sbjct: 696 TGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAK 754



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 18/208 (8%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF-FSSLGFVYKEKVW 604
           G VKR  LS +   R    G   +V+ D D +    I +  T  L  F+SLG     +  
Sbjct: 566 GVVKRTSLSEFSNIR--SNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLG-----QCI 618

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKL 662
           R  +   + +G++   +    +G +      F  D +  +N+   ++  ++ G  +R  +
Sbjct: 619 RFDVEKTREQGRSTRGV----RGIKFKHDTDFVVDANVVDNIEQELLTVSQKGIGKRTTV 674

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++ + NR  SG I+MKL ++   ++      +  D+++ T +G+ +R  +  IR  AGR
Sbjct: 675 EEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRK-AGR 733

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD 747
           N+ GV  +++   D+V+S+A     D D
Sbjct: 734 NTSGVIIVNVDAKDKVVSIAKCPKEDDD 761


>gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
 gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
          Length = 864

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 369/911 (40%), Positives = 523/911 (57%), Gaps = 102/911 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ +DTVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 140 APLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NP+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 200 REVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 260 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM          DL
Sbjct: 379 RRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLM----------DL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++                + E+Q  AILE++L RL  L R  I  E + L  +I+E  +I
Sbjct: 429 LE----------------IDEIQANAILEMQLRRLAALERQKIIQEHDELQAKIREYNEI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+  EL ++ ++    R+T +V    DM  ED I  ED+VVTVS  GYVKR
Sbjct: 473 LASPVRQRGIVSAELAAIVEKFGDDRKTMLVPYDGDMSIEDLIAEEDIVVTVSRGGYVKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 533 TKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + E++    Y+V ATK G V++  L D+     
Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRDYEAT---PYLVLATKGGLVKKTPLKDYDSPRS 649

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      S DE++  E  +  +DILL +K  Q +RF  +  A+R   GR + G
Sbjct: 650 GGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSIRFTATDEALRPM-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+S  +GD+++SM +V                           T   T+     +   
Sbjct: 709 VKGMSFREGDELLSMNVVRPG------------------------TFVFTATDGGYAKRT 744

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N+ E R Q                              R G GI+A  +  + + G+LV 
Sbjct: 745 NVDEYRVQ-----------------------------GRGGLGIKAAKI--VEDRGSLVG 773

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RE 899
              V + D+I+ ++  G +IR  VNEIR   R T GV + +  K + VV + R     RE
Sbjct: 774 ALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINLGKRDAVVGIARNAEAGRE 833

Query: 900 SEIVDEAESTE 910
           +E VD  E+ +
Sbjct: 834 AEEVDGDEAVD 844


>gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
 gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 883

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 352/898 (39%), Positives = 514/898 (57%), Gaps = 95/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 40  IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM            
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +DI
Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G+
Sbjct: 553 TKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGA 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFAPDESIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F     ++   GR + G
Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V   D+D D                                  
Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G GI+A  V  +   GALV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 17/233 (7%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  DE++++   +++ D   T  +G      + A  + A    + +R ++    D++++
Sbjct: 422 LDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILA----MQLRTLTRMNRDKIVA 477

Query: 738 MAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQEL 793
               L    ADY   I  +     QR++I  + +EI +   D   + +     E   ++L
Sbjct: 478 EHEELQRKIADY---IDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDL 534

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E  ++TV+  GF KRT + ++R  +R GKGI+ T   K+ E   +   F  + ++ +
Sbjct: 535 IAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGT---KLREDDVVDHFFLTSTHNWL 591

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +  ++KG + R+   E+   +R +KG     +   A DE + +V  I   E+ 
Sbjct: 592 LFFTNKGRVYRIKAYELPEGARDSKGQHVANLLQFAPDESIQTVLSIPNYEVA 644


>gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
 gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
          Length = 855

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 354/892 (39%), Positives = 510/892 (57%), Gaps = 77/892 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V + DEMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G   ++ +
Sbjct: 7   ERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAMYDGGYRPDRGF 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC+RI G+VMG+YHPHG+ AIYD L R+AQ W +R  +I GQGNFGS   DP AA RYT
Sbjct: 67  SKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSPGDDPAAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           EC+L   A  ++ D+ ++TVDF+PNYDG   EP VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 127 ECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSAGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV +G    + +P+      LDAL+E I+GPDFPT  +I+G +GI++ Y TGRGS
Sbjct: 187 PHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGTSGIEDMYRTGRGS 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306
           + +R +  IE+ +  R Q+VVTE+PYQVN  +++ KIA+LV   R+  ++DLRDE S R 
Sbjct: 247 VTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGVSDLRDESSSRV 306

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R A A V+LN LY++T LQS FS NM+AL    P   TL G +  ++  + 
Sbjct: 307 GRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDDVPRTLTLDGFITNWIHHQI 366

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRT+Y L KA +RAH+  GL  A+  LD+V+ +IR SP  + AR            
Sbjct: 367 DVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEAR------------ 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              LI+L++             + E+Q  AILE++L RL  L R  I +EL  L   I +
Sbjct: 415 -TGLIELLE-------------IDEIQANAILEMQLRRLAALERQKILDELAELERMIAD 460

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL    R   I+  EL  + D+    RR+RI+    D+ DED I  E++VVT++  G
Sbjct: 461 FTDILERPERQREIVSTELAEIVDKYGDDRRSRIIPADGDLSDEDLIPDEEVVVTITSGG 520

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y KR    +YR Q RGGKG  G  +RD DFV  LF  + H  +LFF++ G VY+ K + L
Sbjct: 521 YAKRTKTDLYRVQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTAGRVYRAKAYHL 580

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +  +LS    E+I  ++   + E +    Y+V AT+ G V++ +L+D+ 
Sbjct: 581 PEAGRDAKGGHVAGLLSFQPDEQIAQVLAVRDYEQAP---YLVLATRKGLVKKTRLTDYN 637

Query: 667 QINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
              ++G IA+   D  DE++  E    ++D+LL ++  Q +RF     ++   GR + GV
Sbjct: 638 SPRQAGVIAINFRDDDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQLRPMGRATSGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G+     D ++SM ++    A  D                                   
Sbjct: 698 TGMKFRGEDDLLSMTVIRREHAALD----------------------------------- 722

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +EE   E KL   ++ TV++ GF K+T   ++R+  R G GI+A  ++     G LV  
Sbjct: 723 -AEEVADEDKL---YVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQITGAR--GELVGG 776

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + D D +I V+  G + R  V+ +    R T GV       D+RVV++ R
Sbjct: 777 LVLKDTDDVISVTSGGQVTRSLVSGVNPTGRGTMGVSFVKFKGDDRVVTIAR 828



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++S +  EI     D         +G++S+E   +L   E+ ++T++  G+ KRT +
Sbjct: 471 QREIVSTELAEIVDKYGDDRRSRIIPADGDLSDE---DLIPDEEVVVTITSGGYAKRTKT 527

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R+ +R GKG+R   +   + +  L   FP   +  I+  +  G + R     +  A 
Sbjct: 528 DLYRVQHRGGKGVRGAQLRDGDFVEHL---FPTTAHHWILFFTTAGRVYRAKAYHLPEAG 584

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901
           R  KG     + S   DE++  V  +R+ E
Sbjct: 585 RDAKGGHVAGLLSFQPDEQIAQVLAVRDYE 614


>gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 836

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 338/898 (37%), Positives = 528/898 (58%), Gaps = 95/898 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I D+M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ W++R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ K+TVD   N+D +  EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A + N DI +D LME I+ PDFPTG +I G  G++ A+ TGRG +VIR
Sbjct: 183 PHNLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +H E+ +G R+ IVVTE+PYQVN   M E+ + LV+E ++  +AD+ D++ + G R+V
Sbjct: 243 AKAHFEEVNG-RDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELK+ A  +V+LN L+++T+LQS FSVN +AL   +P++  L  ++  FV  R +VV R
Sbjct: 302 YELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGRPQQLNLKDLIYHFVEHRHDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLD---EVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KA++R H+L G    +A  D   + + IIRF   P   + +LM          
Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKP---KEDLMTE-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL L+L R+  L     + E   L  +I +  
Sbjct: 411 ------------------FELTEIQAEAILALQLRRINKLLILQTKEEYEQLLAQIIDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K +    RR+ I     D+  ED I  + +V+T+S+ GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDIIPDDQVVITISNAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  ++ Y+ Q RGG G+     RD+DF+  LFI + H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTSVNEYKTQARGGVGQKASATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G    +G+A+ N++++   + +  ++   +  ++   N+ YV+ ATK G +++  L  + 
Sbjct: 573 GGKNTKGRAIQNLINIEPDDLVKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G +A+ +   DE+L     +  + I+L  K G+ +RFP   +R   GR+  GVRG
Sbjct: 633 RPRQNGIVAITIKEDDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRA-VGRSGSGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL               D+D DE I  +                        ++E  + 
Sbjct: 692 ISL---------------DSDKDEVIGMI------------------------AIENPL- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKR-------TSSYDFRISNRSGKGIRATDVSKINEIG 839
                     E+ +L VSE G+GKR       T    +RI+NR GKG++   +++  + G
Sbjct: 712 ----------EETVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITE--KTG 759

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LVA+  V + D +++++  G  IR+PV+ +R+  RAT+GV + +   ++ + +V ++
Sbjct: 760 NLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRATQGVRLINIKGNDSIAAVAKV 817


>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
 gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
          Length = 866

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 355/911 (38%), Positives = 546/911 (59%), Gaps = 71/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 9   ESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY
Sbjct: 69  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 128

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVD+  N+DGS QEP V+ AR P++L+NG  GIAVGMATN
Sbjct: 129 TESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +A+I +P++D  AL+ +I GPDFPTG  ILGR GI+  Y TGRGS+ 
Sbjct: 189 IPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQILGRRGIRETYTTGRGSVT 248

Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 249 MRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDGISDIRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIEL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 309 DGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSEPVLLTLRRMLQVFLEFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  TAR +L +R     
Sbjct: 369 IETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARLQLQERHG--- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q+ AIL+++L RLT L  D IR E   L  +I 
Sbjct: 426 -----------------------LSEIQSDAILQMQLRRLTALEADKIRLEHEDLVTKIA 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+LG+I+ EL+ +++   + RRT I++    +ED D I  E  VV ++  
Sbjct: 463 DYKDILGRRERVLGLIEAELIQLRERYPSERRTEILDLEGGLEDIDLIANERSVVLLTEN 522

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G VY    +R
Sbjct: 523 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDRGVVYAVPAYR 582

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGNVRRNKLSD 664
           +P+GS  A+G  ++ +L + + E+IT+++      S++ +++ ++  T  G ++R +LS 
Sbjct: 583 VPVGSRGAKGTPVVQLLPIPREEQITSLVAV----SAFDDDVQLLMLTSGGYIKRTRLSA 638

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
           F  I  +G IA+ L+  D +         + +L+ +  G  + F ++   +R   GR + 
Sbjct: 639 FANIRSNGLIAISLEDGDALRWARLALPGDSVLIGSLKGMTIHFRLTDGELRPL-GRTAR 697

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR ++L  GD+++SM ++    AD                     +    + + D+   
Sbjct: 698 GVRAMALRPGDELVSMDVLPAELADQ-----------------VASSSASENEEEDAPEA 740

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  S+           ++L  S  G GKR     FR+  R+G G+RA    +  ++  LV
Sbjct: 741 GESSD---------GPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKFRRDGDV--LV 789

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---- 898
            +  +   ++++LVS++G ++R+  + I   SRA  GV +      +R+  V  +     
Sbjct: 790 GLTVMGPGEELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLSEVVLVPPAPD 849

Query: 899 ESEIVDEAEST 909
           E ++ D AE++
Sbjct: 850 EEDLADTAETS 860


>gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1]
 gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC]
          Length = 830

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 348/896 (38%), Positives = 535/896 (59%), Gaps = 91/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+  PD+ ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKVR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ +   RE I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A+V  R EV+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWVRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LD+VV  IR S + E A+ +L+++          
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEK---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 414 ----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRT I  +     + ED I  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++    T E++ ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV                                  ++D SV    
Sbjct: 694 VSLKNEKDRVVACQIV----------------------------------RDDQSV---- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 716 ---------------LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +V++E++  +E
Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNE 814


>gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
          Length = 826

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 330/740 (44%), Positives = 483/740 (65%), Gaps = 31/740 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM++I GPDFPTG +I+GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +LK ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDGAPHFLTLKQMLKYYLDHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTK+ L KA  RAH+L GL IA+ ++DE+V+IIR S + + A+  L+ R      
Sbjct: 363 DVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVISIEDEDLIEKQNVLLTLTHK 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ ++ Q RGGKG  G+ +++ DF   L   STH  +LFF++ G VY +K + 
Sbjct: 517 GYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L +GE+I T++  PE     ++ Y+ F TK G V+R  +S+F
Sbjct: 577 IPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPE---GADDNYLFFITKMGTVKRTHVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GVR
Sbjct: 634 SNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHAD 745
           GI+L   D V+   ++   D
Sbjct: 693 GINLRDNDYVVGSEVIKPND 712



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 20/155 (12%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           YDE +   K    +RR   G   E+ S++++  +E             K+  +LT++ KG
Sbjct: 472 YDELLDIQKRFGDERRTEIG-ASEVISIEDEDLIE-------------KQNVLLTLTHKG 517

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + KR    +F+  NR GKGI+   V   +    L+     + +D ++  ++KG +     
Sbjct: 518 YIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYS---STHDMLLFFTNKGKVYSKKA 574

Query: 868 NEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
            EI    R  KG+ I       K E++ +V  I E
Sbjct: 575 YEIPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPE 609



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 18/252 (7%)

Query: 638 EDESSWNNLYVVFATKH-GNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEN 694
           EDE       V+    H G ++R  +++F   NR GK    M + + D    +   +  +
Sbjct: 499 EDEDLIEKQNVLLTLTHKGYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHD 558

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDER 751
            +L  T  G+        I  F GR + G   V  + L KG++ I   I +   AD D  
Sbjct: 559 MLLFFTNKGKVYSKKAYEIPEF-GRTAKGLPIVNLLQLEKGEK-IQTVINIPEGAD-DNY 615

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGF 808
           + ++  M   +R       E ++++N   +   +   +E    L    +Q IL  +  G+
Sbjct: 616 LFFITKMGTVKRT---HVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGY 672

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
               +  D R   R+  G+R  ++   + +     + P   ND+++++S+KG   R P +
Sbjct: 673 AVTFNEGDVRPMGRTAAGVRGINLRDNDYVVGSEVIKP---NDEVMVISEKGYGKRTPAS 729

Query: 869 EIRIASRATKGV 880
           E  I  R  KG+
Sbjct: 730 EYPIKGRGGKGI 741


>gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 883

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 355/906 (39%), Positives = 519/906 (57%), Gaps = 95/906 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 40  IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM+          L
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME----------L 448

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L  LT + RD I  E   L   I + +DI
Sbjct: 449 LD----------------IDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRRIADYIDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  +  +    RRTRI+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFAPDETIQTVLSIPNYEVAR---YLVLATRSGKVKKTPLAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  ++DI+L ++LG  ++F     ++   GR + G
Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAQDDIILVSRLGMSLKFQADDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V  +D+D D                                  
Sbjct: 730 VQGMKFRADDSLLAMDVV-PSDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G G++A  V  +   GALV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAIGEYRLQGRNGLGVKA--VQLVEGRGALVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +  
Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDMILSIARNEEKDEP 856

Query: 904 DEAEST 909
           +E   T
Sbjct: 857 EEDGGT 862


>gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
 gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
          Length = 830

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 347/896 (38%), Positives = 534/896 (59%), Gaps = 91/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+  PD+ ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKVR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ +   RE I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++  +V  R EV+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISVWVRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LD+VV  IR S + E A+ +L+++          
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEK---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 414 ----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRT I  +     + ED I  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFSN 634

Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE++ +V   ++E  ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV                                  ++D SV    
Sbjct: 694 VSLKNEKDRVVACQIV----------------------------------RDDQSV---- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 716 ---------------LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +V++E++  +E
Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNE 814


>gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 832

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 355/879 (40%), Positives = 519/879 (59%), Gaps = 88/879 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL  M +     ++ YVKCA
Sbjct: 30  VIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCA 89

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEV+G YHPHG+A++Y+AL RM QD+SLR+ LI+GQGNFGS+DGD PAA RYTE RL
Sbjct: 90  KIVGEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARL 149

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  LL D+ K+TV F PNYD + Q+P VL A +PN+LVNG  GIAVGMATNIP HNL
Sbjct: 150 EKVAEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNL 209

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E +D  +AVI NP+I +  ++ II GPDFPT  +I+G  G+ +AY TG+GSI IR    
Sbjct: 210 KETIDAVIAVIRNPEITIPEILRIIPGPDFPTSGIIIGGEGLISAYTTGKGSIRIRSKVE 269

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    RE IVVTEIPYQVNK  +LEKI ++V EK+I  I+++ D SDR+G R+ I +K
Sbjct: 270 IEEKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIHIK 329

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A VILNQLY+ T LQ  + + M+A+   KP+ F +  IL A+ A R +V+V+RT++
Sbjct: 330 KDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYSAHRRDVIVKRTQF 389

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ N+++V+++IR S NP  A+++LM R               
Sbjct: 390 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVR--------------- 434

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ+ AILE+RL RLT L    I +EL  +   I +  DIL+  S
Sbjct: 435 -----------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIVDLKDILAKPS 483

Query: 496 RLLGIIKQELLSVKDELDTPRRT---RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           R+  I+  EL  V D+  T R+T              ED I  E+MV+ +++  ++KR+P
Sbjct: 484 RINDIVCTELQEVGDKYGTKRKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLP 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  ++ Q+RGGKG  G+  + +D +  +    TH S++FFS++G VY  K + LPI S +
Sbjct: 544 IDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKE 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK+L  I++L + E +++I  F   +   + L V   TK G ++R +L +F  + +SG
Sbjct: 604 ARGKSLKAIINLREDEYVSSIFTFRGQDMDKDLLLV---TKRGFIKRIQLKEFGNVKKSG 660

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ VE    ++++++ +K G  +R   + IR   GR + GV G+ LA+ 
Sbjct: 661 IIAIGLREGDELIKVEAIEDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAED 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++ ++                K+   +   +                   +SEE    
Sbjct: 720 DTIVGLS----------------KYKEGEDIFV-------------------VSEE---- 740

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                         G+GKR    +F    R GKG+    V++ N  G  V    V   D+
Sbjct: 741 --------------GYGKRLGFEEFAAKGRGGKGMAYLKVTEKN--GFSVGTGSVGSEDE 784

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +IL++ +G  IR+   +I    R   GV I     +++V
Sbjct: 785 VILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKV 823



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLI 765
           R PI   +    R   G++G+S  + D + I  A + H    +   I  +  M A    I
Sbjct: 541 RLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPI 599

Query: 766 SGDT------EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +         + I +L+ D  V  +I   R Q++   ++ +L V+++GF KR    +F  
Sbjct: 600 ASKEARGKSLKAIINLREDEYV-SSIFTFRGQDM---DKDLLLVTKRGFIKRIQLKEF-- 653

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            N    GI A  + + +E   L+ V  + D D++++ S KG  +R+  N IR   R   G
Sbjct: 654 GNVKKSGIIAIGLREGDE---LIKVEAIEDKDEVMIFSKKGLALRIEGNIIRAQGRTASG 710

Query: 880 VVIFSTAKDERVVSVERIRESE 901
           V     A+D+ +V + + +E E
Sbjct: 711 VTGMRLAEDDTIVGLSKYKEGE 732



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV---MRDEDFVTDLFIVSTHTSVLFFSSL 595
           ++ V+  G++KR+ L  +     G   +SG++   +R+ D +  +  +     V+ FS  
Sbjct: 636 LLLVTKRGFIKRIQLKEF-----GNVKKSGIIAIGLREGDELIKVEAIEDKDEVMIFSKK 690

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G   +       I   Q R  + +  + L + + I  +  + E E    +++VV  ++ G
Sbjct: 691 GLALR---IEGNIIRAQGRTASGVTGMRLAEDDTIVGLSKYKEGE----DIFVV--SEEG 741

Query: 656 NVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCT--QENDILLTTKLGQCVR---FP 709
             +R    +F    R GK +A    +     SV T +   E++++L T+ G  +R   F 
Sbjct: 742 YGKRLGFEEFAAKGRGGKGMAYLKVTEKNGFSVGTGSVGSEDEVILITQQGMTIRINAFD 801

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           IS +    GR +VGVR + L   D+V    ++
Sbjct: 802 ISKL----GRTAVGVRIVDLKDNDKVQDFTVL 829


>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
 gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
          Length = 886

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 352/886 (39%), Positives = 524/886 (59%), Gaps = 62/886 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 19  IIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL
Sbjct: 79  RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL+D+  +TVD+  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 139 RALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG +A+I+NP+I    L+ +I GPDFPTG  ILGR GI+  Y +GRGS+ +RGV+
Sbjct: 199 LSELIDGLMALINNPEISEQELITLIPGPDFPTGGQILGRAGIRETYLSGRGSVTMRGVA 258

Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            +E        DR+ +++T +PYQ NKAA++E+IAE+V +K++  I+D+RDESDR G R+
Sbjct: 259 EVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR E + 
Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRIETIE 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L  R          
Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHG-------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS VQ  AIL+++L RLT L  D IR E   L  +I +  DI
Sbjct: 431 ------------------LSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+LG+I++EL+ +++    PRRT I++    +ED D I  E  VV ++  GY+KR
Sbjct: 473 LGRRERVLGLIQEELVQLRERHSVPRRTEILDLAGGLEDIDLIANERSVVLLTETGYLKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  S
Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L + + E IT+++   E     + L +   T+ G ++R +LS F  I  
Sbjct: 593 RTAKGTPVVQLLPIPREEAITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L+  D +  V      + +L+ +K G  + F ++   +R   GR + GVR ++
Sbjct: 650 NGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLADGELRPL-GRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L KGD ++SM ++    A+  ++I      +          E         + EG     
Sbjct: 709 LRKGDSLVSMDVL---PAELADQIAASADDAGDGDDAGDVAETAV------AAEG----- 754

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA       +   LV +  + 
Sbjct: 755 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVGLRVLG 803

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V
Sbjct: 804 AGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADV 849


>gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 921

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 356/890 (40%), Positives = 520/890 (58%), Gaps = 95/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ + KC+
Sbjct: 36  VEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFNKCS 95

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG+YHPHG+++IYDAL R+ QDWSLR  L++GQGNFGS   DP AA RYTECR+
Sbjct: 96  RVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYTECRM 155

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  L+ D+ K TVDF PNYDG   EP VL +R+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 156 APLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIPPHNL 215

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV    + V+++PD      LDA+M  I+GPDFPTGA+I+GR GI++AY TGRGSI++R
Sbjct: 216 REVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIMGRKGIEDAYRTGRGSIIMR 275

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VV+E+PYQVN  ++ +KIAE V++ R+  IAD+RDE S R G R+
Sbjct: 276 AVVEVEEIQG-RQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRTGQRL 334

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI L+R A A V+LN LY++T LQ+ F  NM+AL    P    +   ++ +V  + +V+ 
Sbjct: 335 VIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIDAFIRHWVDHQIDVIQ 394

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YLL +A DR H+L GL  A+  LDEV+ +IR SP  E AR               L
Sbjct: 395 RRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAAR-------------DGL 441

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL++             + E+Q RAILEL+L RL  L R  I +E +++  EI++  DI
Sbjct: 442 IDLLE-------------IDEIQARAILELQLRRLAALERQKIIDEHDAIQREIEDYEDI 488

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+   R   I+  EL ++ ++    RR+ I+ G   DM  ED I  ED+VVT++  GY K
Sbjct: 489 LAKPERQRNIVSDELGTIVEKYGDDRRS-IIHGFDGDMSMEDLIPEEDVVVTITRGGYAK 547

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  YR+Q+RGGKG  G  +R ED V   F  ++H  +LFF++LG VY+ K + LP  
Sbjct: 548 RTKVDAYRSQKRGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYELPDA 607

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + NI++    E I  ++     E S    Y+V ATK+G V++ +LS++    
Sbjct: 608 SRDSKGQHVANIMAFQPDEHIAQVLALRNYEIS---PYLVLATKNGLVKKTRLSEYDSPR 664

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
             G IA+ L   DE++     +  +D+LL +K GQ VRF    + +R   GR++ GV G+
Sbjct: 665 TGGLIAVNLRDEDELVGAGLTSSADDLLLVSKKGQSVRFHADDATLRPM-GRSTSGVTGM 723

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D ++SM+++                            EE T              
Sbjct: 724 KFRGEDSLLSMSVI----------------------------EEGT-------------- 741

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFP 846
                    +  +  V E G  KR+ +  +   N  G+ I    V+K  E G  LV    
Sbjct: 742 ---------DPDVFVVFESGLAKRSQASQW---NVKGRAILGVTVAKQTEKGGDLVGALT 789

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V+++D++++V ++G ++R  V+E+R+  R T GV      K++ +V V R
Sbjct: 790 VSEDDEVMVVFERGNIVRSRVDEVRLTGRNTAGVWFAKPGKNDAIVGVAR 839



 Score = 44.3 bits (103), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           QR ++S +   I     D   S + G   +   ++L  +E  ++T++  G+ KRT    +
Sbjct: 495 QRNIVSDELGTIVEKYGDDRRSIIHGFDGDMSMEDLIPEEDVVVTITRGGYAKRTKVDAY 554

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R   R GKG++   +   + +      F    +  ++  ++ G + R    E+  ASR +
Sbjct: 555 RSQKRGGKGVKGASLRGEDVVAHF---FTTTSHHWLLFFTNLGRVYRAKAYELPDASRDS 611

Query: 878 KG---VVIFSTAKDERVVSVERIRESEI 902
           KG     I +   DE +  V  +R  EI
Sbjct: 612 KGQHVANIMAFQPDEHIAQVLALRNYEI 639


>gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11]
 gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987]
 gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A]
 gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85]
 gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503]
 gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A]
 gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
 gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210]
 gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11]
 gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A]
 gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148]
          Length = 838

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
          Length = 883

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 352/898 (39%), Positives = 513/898 (57%), Gaps = 95/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 40  IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIY  L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 100 RVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219

Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+
Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V+ 
Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM            
Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +DI
Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 553 TKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 613 RDSKGQHVANLLQFAPDESIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669

Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
            G IA++L      ++ DE++    C  E+DI+L +KLG  ++F     ++   GR + G
Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V   D+D D                                  
Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +  V+ +GF KRT+  ++R+  R+G GI+A  V  +   GALV 
Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 17/233 (7%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  DE++++   +++ D   T  +G      + A  + A    + +R ++    D++++
Sbjct: 422 LDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILA----MQLRTLTRMNRDKIVA 477

Query: 738 MAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQEL 793
               L    ADY   I  +     QR++I  + +EI +   D   + +     E   ++L
Sbjct: 478 EHEELQRKIADY---IDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDL 534

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E  ++TV+  GF KRT + ++R  +R GKGI+ T   K+ E   +   F  + ++ +
Sbjct: 535 IAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGT---KLREDDVVDHFFLTSTHNWL 591

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +  ++KG + R+   E+   SR +KG     +   A DE + +V  I   E+ 
Sbjct: 592 LFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVA 644


>gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
 gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
          Length = 813

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 356/888 (40%), Positives = 521/888 (58%), Gaps = 95/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV     + K +
Sbjct: 15  IDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GE MG YHPHG++AIYD L RM+QD+S+R  L++GQGNFGSVDGDP AA RYTE R+
Sbjct: 75  SVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LL D+ K+TVDF  NYD   +EP VL A  PN+LVNG  GIAVGM+TN+P HNL
Sbjct: 135 SPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSSGIAVGMSTNVPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P+  +  LME ++GPDFPTGA I+GR  I +AY TGRG + +R  + 
Sbjct: 195 REVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIVGREAIHSAYTTGRGRLRVR--AE 252

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+   D RE+IV+TE+P+Q NK+ ++E+IAE V E +I  I+DLRDESDR G R+ I+L
Sbjct: 253 FEREQADKRERIVITELPFQQNKSRLVERIAENVNEGKIEGISDLRDESDRDGIRIAIDL 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+ADV+ NQL  +  L+  F V  +AL   +P+   L   L+ +V  R++VV RR++
Sbjct: 313 KRGANADVVENQLLEH-HLERTFGVINLALVDGQPQVLDLKETLEHYVEHRKDVVRRRSE 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A DRAH+L G   A+ N+D VV +IR + +   A+  L       SD  D     
Sbjct: 372 YDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEAL-------SDEFD----- 419

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q   I+ ++L  LT L R++I  E ++L  EI+    IL++ 
Sbjct: 420 --------------FSEAQAEHIVRMQLGSLTSLERNEIDEEYDALVEEIERLETILANE 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S LLG+IK+EL  +++E    RRT I+EG   +  ED I  ED ++ V+   YVKR+P+S
Sbjct: 466 SELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEEDSLILVTEDDYVKRMPVS 525

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q RGGKG  G  +++ D V+ +F  +TH  +L F++ G  Y+ + + +P  S  AR
Sbjct: 526 AFDPQGRGGKGIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTAR 585

Query: 615 GKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           GK+ +NIL L+  E +T ++    F ++E      ++   T++G V+R + S F ++  S
Sbjct: 586 GKSAVNILDLDPDEELTAVVNTDDFDDEE------FLTMVTENGYVKRTEASAFERVRSS 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA  L+  D ++ V       D+L+ T+ G  +RFP S  R   GR + GV GI L  
Sbjct: 640 GLIAASLEEGDRLVDVTVTDGSADLLIATRNGMAIRFPESEARAM-GRTARGVNGIKLQG 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+                           L++ D                       
Sbjct: 699 GDSVVG--------------------------LVTAD----------------------- 709

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               + + +LT++E G+GKRT   ++R  +R GKG+   D+   N  G + AV  V+++D
Sbjct: 710 ----ESRSLLTITENGYGKRTPFSEYRTQSRYGKGL--IDIKTGNRNGPVAAVESVSEDD 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++++SD   ++R+   ++    R TKGV++   A D+RV SV+ I E
Sbjct: 764 DLVVMSDDAQIMRIHAADVSRVGRNTKGVIVMRLAGDDRVASVDVIPE 811


>gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 838

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 348/887 (39%), Positives = 516/887 (58%), Gaps = 91/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK A
Sbjct: 7   ILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RYTECRL
Sbjct: 67  RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 127 TPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NPD D    L+A ME I+GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 187 RELADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIVGTQGIKDAYTTGRGSIRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR G R+
Sbjct: 247 GVTSIEE-EGSRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGMRI 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA + EV+V
Sbjct: 306 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + ARR              L
Sbjct: 366 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARR-------------GL 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL             + + EVQ  AIL ++L RL  L R  I +EL  +   I +  DI
Sbjct: 413 IDL-------------LTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDI 459

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL  + D+    RR++I+    D+ +ED I RE++VVT++  GY KR
Sbjct: 460 LASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITSTGYAKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 520 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G V++++LSD+     
Sbjct: 580 RTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATVQGRVKKSRLSDYESARS 636

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G IA+ L+  D+++    C+ E+D+LL ++ GQ +RF     ++   GR++ GV+G+  
Sbjct: 637 GGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRF 696

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D +++M +V   D  Y                                         
Sbjct: 697 RGDDHLLAMTVV--RDGSY----------------------------------------- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +  G+GKRTS  ++  S +   G+         + G L+    V++
Sbjct: 714 ----------LLVATAGGYGKRTSMDEY--SVQGRGGVGVVTFKYNPKRGKLIGALAVDN 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R
Sbjct: 762 DDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 808


>gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy]
 gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy]
          Length = 855

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 363/906 (40%), Positives = 520/906 (57%), Gaps = 102/906 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E  E    SV +++EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +MG+  N
Sbjct: 2   EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + KCARI G+V+GKYHPHG+A++YDAL R+AQD+SLR  ++  QGNFGS+DGDP AA 
Sbjct: 62  TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ +    +L D+ K+TV+F PNYD S QEP VL A +P +L NG  GIAVGMAT
Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNL E+ D   AVIDNPDI +D LME I+GPDFP+G +I G  GIK+A+ TGRG I
Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGGIICGLQGIKDAFMTGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R V  IE +  D +QIV TEIPYQVNKA +++KI +L ++  I  I+ +RDESDR+G 
Sbjct: 242 VVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK GA   V+LNQL+  T+LQS F+VN +AL   +P+  TL  +L  ++  REEV
Sbjct: 302 RIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALVQGRPQMLTLKDMLVYYIRHREEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA++RAH+L GL I + N+DEV++II+ S +   A   L+ R        
Sbjct: 362 VTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L ++Q +AI++++L RL+ L    I  EL  L  +I    
Sbjct: 414 ------------------FGLDQIQAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSH 544
           ++LS   ++L +++ E+ ++   L  P+  R+     E L     ED I  E +VV +S+
Sbjct: 456 EVLSDEGKILKLVQSEVRALPSSL-VPKDRRLTKIAREELGQSTLEDFIKDEQVVVLISN 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR+    Y A  R GKG     ++D DFV  +F+  TH  V+F ++ G  Y  KV+
Sbjct: 515 KGFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVF 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  A+G ++ NIL L   E+IT+I+ F E      + Y++ AT+ G V++  L++
Sbjct: 575 EIPEASKTAKGTSIKNILQLETTEKITSIISFKE---FSEDHYLMMATRDGVVKKVSLNN 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F+     G  A+ LD  DE+LS +   + ++++L TKLG+ +RF    +R   GR S GV
Sbjct: 632 FVNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGLRFRQDNVRAM-GRASRGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   DQV  +                                    LK DS+    
Sbjct: 691 RGIRLLANDQVAGL------------------------------------LKVDST---- 710

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA---- 840
                        + IL ++E G GK+ +   F +  R  +G       KI  +G     
Sbjct: 711 -------------KRILMITENGQGKQVNFDSFTVHGRGTQG------QKIYRLGGKASF 751

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDE--RVVSVER 896
           +V V  V+D + ++  +  G  +RV VN I I  R   GV + S   A D    + S ER
Sbjct: 752 IVGVLSVDDENDVVCATLMGQTLRVHVNAISIQGRNAAGVKVVSMKFAGDSIVAIASTER 811

Query: 897 IRESEI 902
             E E+
Sbjct: 812 DDEEEV 817


>gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
 gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
          Length = 838

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+  +D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
          Length = 820

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 348/883 (39%), Positives = 518/883 (58%), Gaps = 91/883 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+S SITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RRIL+ M++ G+  N+ + KCA
Sbjct: 9   ISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAMLREGLLHNRAFDKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+  YHPHG++++YD L RMAQ W +R  LI+ QGNFGSVDGD PAA RYTE RL
Sbjct: 69  GVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVDGDSPAAYRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ +DTVDF  NY  S  EP VL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 129 TAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VS 254
            E++DG  A IDNP+I +  L E+I+GPDFPTG  I+GR GI     TGRG + +RG V+
Sbjct: 189 DELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRIIGRKGIDEYMNTGRGIVRMRGTVT 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                 GDRE+I+++ IPY VN+A ++ KIAELV  K +  I+DLRDESD +  R+VIEL
Sbjct: 249 SEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDLRDESD-ENTRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   +VI+++LY+ T+L++ F VNM+AL+  +P++  +  ++  ++  R EV+ RRT 
Sbjct: 308 KRGEFPEVIISKLYKKTALEASFGVNMLALDNKRPKQMNMKEMINCYIDHRREVIYRRTA 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DRAH+L G  IA+ NLD+ ++IIR S N + A+  L ++              
Sbjct: 368 FRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQEKYP------------ 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q  AIL+LRL +LTG+ R  I  E   L   I+E   IL + 
Sbjct: 416 --------------LSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEELRSILENE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +LL IIK+EL  +K++  +PR+  IV    D+   D   +E   +T+SH G++KRV  S
Sbjct: 462 YKLLSIIKEELSELKEKYTSPRKCEIVPYEGDISKADMTPKEGCFITISHKGFIKRVSDS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R Q+RGGKG  G    ++DFV  +F  +TH +++FF + G VY EKV+ LP GS  ++
Sbjct: 522 EFRTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELPEGSRTSK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+++ N+L L + E+I  ++   E    +N   +V  TKHG V++  L+ +    + G I
Sbjct: 582 GRSINNVLQLQKEEQIAAMICVKEITEDFN---LVMCTKHGTVKKTNLAAYKNFRKGGII 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + +D  D +++V+   +++++++ T LG+ +RF  S +R   GR + GVRG+ L++ D 
Sbjct: 639 GINIDEGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLRE-QGRATRGVRGVKLSEKDY 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
             +M +V                                   N+S+              
Sbjct: 698 AQAMEVV----------------------------------DNESA-------------- 709

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L     G GKRT+  +F +  R G G+ A   + +   GAL     V ++D+I+
Sbjct: 710 -----LLICGINGQGKRTTFDEFPLQKRGGSGVIAAKTAGV--AGALA----VRESDEIM 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++  G  +R  V +I +  R TKGV   +  K + ++ + RI
Sbjct: 759 MLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLLGIARI 801


>gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
 gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
          Length = 838

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+  +D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136]
          Length = 891

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 353/910 (38%), Positives = 538/910 (59%), Gaps = 76/910 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  +++ +E++ S+L Y+++VI+ RA+PD+RDGLKP  RRIL+ M ++ +   KK++
Sbjct: 3   EDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKKHM 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I G+  G YHPHG A IY  L  MAQ WS+R  L+  QGNFGSV+GDPPAA RYTE
Sbjct: 63  KCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL      L+DD+ K+TVDF PNYD    EPVV  A +PN+LVNGG GIAVGMATN+P 
Sbjct: 123 ARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNLPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+VDG  A IDNP+I L  LM+ +RGPDFPTG  +LG  GI++ + TG GS+ IRG
Sbjct: 183 HNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLLGTAGIRDYFETGHGSLRIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I +T G + QI++T IPY VN+A + ++I EL  EK I ++  +RDESD +  RVV+
Sbjct: 243 HAEISET-GTKPQIIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESD-ENTRVVV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A   V+LN LY+ TSL++ FSV+M+A++  +P   +L   +  ++  R EV++RR
Sbjct: 301 DLRREARPQVVLNNLYKQTSLETTFSVHMLAIDNRRPRLLSLKDAISCYIEHRREVIIRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKYLL +A   A  L  L +A++ LD+ +++IR + + + A   +   ++     + L  
Sbjct: 361 TKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQSLGI 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI  S  +I S G    +++Q + IL+LRL +LT L R  ++ +  +L   I + +DIL+
Sbjct: 421 LI-RSQPSIRS-GRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDILA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             SR+L IIK EL +++ +  T R T+I     ++  ED I  E  +VT++H G+VKR  
Sbjct: 479 KESRVLTIIKDELGNIRAKYGTERLTKIEAAEGEINIEDLIANERNIVTITHRGFVKRTL 538

Query: 553 LSVYRAQRRGGKGRSGVVMRD-------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            S +R Q RGGKG  G+  R+        DFV  LF  S H  ++FF++ G VY E+V++
Sbjct: 539 ASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNTGRVYVERVYQ 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP----EDESSW-NNLYVVFATKHGNVRRN 660
           +P  +   +G+++ N+L+L   E+I  ++        DE  W ++ +V+FATK G V++ 
Sbjct: 599 VPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEGVWRSDRFVLFATKDGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +L+DF  I + G IA+KLD  ++++ V      ++I L T  G CV+   + IR   GR 
Sbjct: 659 ELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEETDIRPM-GRA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI   + D V+S+  V       DE        +AQ                   
Sbjct: 718 AAGVMGIRPGETDHVVSLTAV-------DE--------TAQ------------------- 743

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L VSE G GKRT   ++R +NR  KG+   +V++  + G 
Sbjct: 744 -------------------LLVVSENGLGKRTPFEEYRKTNRGAKGVTTMNVTE--KTGN 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+++D+++L++  G  +R+ V +IR   R  +GV + + ++ E +  V ++   
Sbjct: 783 VVAAMAVHEDDELMLMTSSGQSVRIRVADIRQTGRNAQGVKLMNLSEGETIQDVAKV--- 839

Query: 901 EIVDEAESTE 910
            I D+ E  E
Sbjct: 840 -IPDDEEKVE 848


>gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A
 gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 838

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+  +D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLVSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 851

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 349/887 (39%), Positives = 516/887 (58%), Gaps = 91/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK A
Sbjct: 20  ILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RYTECRL
Sbjct: 80  RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 140 TPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NPD D    L+A ME I+GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 200 RELADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIVGTQGIKDAYTTGRGSIRMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR G R+
Sbjct: 260 GVTSIEE-EGSRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGMRI 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA + EV+V
Sbjct: 319 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + ARR              L
Sbjct: 379 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARR-------------GL 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL             + + EVQ  AIL ++L RL  L R  I +EL  +   I +  DI
Sbjct: 426 IDL-------------LTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL  + D+    RR++I+    D+ +ED I RE++VVT++  GY KR
Sbjct: 473 LASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITSTGYAKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 533 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G V++++LSD+     
Sbjct: 593 RTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATVQGRVKKSRLSDYESARS 649

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G IA+ L+  D+++    C+ E+D+LL ++ GQ +RF     ++   GR++ GV+G+  
Sbjct: 650 GGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRF 709

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D +++M +V   D  Y                                         
Sbjct: 710 RGDDHLLAMTVV--RDGSY----------------------------------------- 726

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +  G+GKRTS  ++  S +   G+         + G L+    V+D
Sbjct: 727 ----------LLVATAGGYGKRTSMDEY--SVQGRGGVGVVTFKYNPKRGKLIGALAVDD 774

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R
Sbjct: 775 DDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 821


>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
 gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
          Length = 872

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 352/906 (38%), Positives = 537/906 (59%), Gaps = 72/906 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++DG +A+I NP+++   LM II+GPDFPTG  ILGR+GIK  Y +GRGSI 
Sbjct: 194 IPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSGIKETYLSGRGSIT 253

Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IA++V +K++  IAD+RDESDR
Sbjct: 254 MRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R +   V+LN L++ T LQ+ FS NM+AL   +P   +L  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVILSLRKMLQVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + +RTKYLL KA  R H+L+GL +A+  LDE++ +IR + +  TA+ +L +      
Sbjct: 374 VETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQELHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+++Q+ AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKIT 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL+ + R+  I K EL  +K++ +T RRT I++    +ED D I  E  VV ++  
Sbjct: 468 DLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + A  RG +G++G   + E+ V      + H S+L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSD 664
           +P  S  A+G  ++ +L + + E IT+++      SS+++  Y++  T+ G ++R  LS 
Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLSV----SSFDDENYLLMLTRGGYIKRTPLSA 643

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
           F +I  +G IA+ L+  D +  V      + +L+ +K G  + F +  S +R   GR++ 
Sbjct: 644 FSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPL-GRSAR 702

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD ++SM ++    AD+ ++    +  S                       
Sbjct: 703 GVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELHSESSESEG---------------- 746

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           ++L  S  G GKR     FR+  R+G G+RA    K  +   LV
Sbjct: 747 ---------------PWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGD--ELV 789

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +   ++++LVS++G ++R   ++I   SRA  GV I      +++  V  +   +I
Sbjct: 790 GLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849

Query: 903 VDEAES 908
            D+ E+
Sbjct: 850 NDDDEN 855


>gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
          Length = 808

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 356/885 (40%), Positives = 519/885 (58%), Gaps = 86/885 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +  V +  EM+NSYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+  N+ Y
Sbjct: 3   EKSKVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R  LI+G GNFGS+DGD PAA RYT
Sbjct: 63  RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  L+ D+ KD VDF PNYD S +EPVVL  + P +L+NG  GIAVGMATNIP
Sbjct: 123 EVRLSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +I+ P  +++ L+  I+GPDFPTG +I+G  GI+ +Y TG+G + +R
Sbjct: 183 PHNLGELIDALLYLIEKPTAEIEELLNFIKGPDFPTGGIIIGTKGIRESYLTGKGKLTVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+T    + I++ EIPY VNK+ +L +IAELV+EK+I  I DLRDESDR G RVV
Sbjct: 243 GKLVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A   +++NQLY++T LQ+ F V M+A+   +P+ F L  +L  F+  R++VV+R
Sbjct: 303 IELKKDADPKIVINQLYKHTQLQTTFGVIMLAILDGQPKIFNLKELLTIFLEHRKDVVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA+ RAH+L GL IA+ +LDEV+ IIR + N E A+ +LM R           
Sbjct: 363 RTKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q +AIL++RL +LT L ++ +  E+  +   I     IL
Sbjct: 412 ---------------FKLTQNQAQAILDMRLHQLTRLEKERLMEEMKQIKENISILERIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
                L  +I +EL  +K +    R+T I  E   D+  ED +     V+ ++  GY+KR
Sbjct: 457 KDEKELWRVISEELKEIKKKYADERKTSIEEEEKSDITIEDILPDNPEVICITQDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS Y+ QRRGGKG + +   ++D +T   + ST +++  FS+ G VY  K + L   S
Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G A+   L++   ERIT I+   E      NLY  F T  G V++  + +F  + +
Sbjct: 577 RQSKGIAIKEYLNIENEERITEIISLSE---LPKNLYFFFITSKGIVKKTPVEEFENVRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+K+   D +++V   +  N+I++ T+ G  +RF     R   GR + GV GI L 
Sbjct: 634 SGIYAIKIGEGDFLVNVFLTSGNNEIIIFTRKGNAIRFHEKDTRPM-GRVAQGVIGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI                                              G I +E  
Sbjct: 693 KDDSVIG---------------------------------------------GVILQESK 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q        I+ V++ G GKR +  +F    R G GIRA  ++  ++ G L+ V  V++N
Sbjct: 708 Q--------IVLVTKYGIGKRVNPQEFSTQKRGGIGIRAIKIT--SKTGDLIGVKNVSEN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           D+I++ + KG +IR+PVN I I SR ++GV +    +D+ VVS++
Sbjct: 758 DEILISTKKGQIIRIPVNNIPILSRNSQGVKLVKLNEDDSVVSMD 802



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           K  +   ++ KG  K+T   +F   N    GI A    KI E   LV VF  + N++II+
Sbjct: 607 KNLYFFFITSKGIVKKTPVEEF--ENVRKSGIYAI---KIGEGDFLVNVFLTSGNNEIII 661

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + KG  IR    + R   R  +GV+     KD+ V+    ++ES+
Sbjct: 662 FTRKGNAIRFHEKDTRPMGRVAQGVIGIKLRKDDSVIGGVILQESK 707


>gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
 gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
          Length = 841

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 333/733 (45%), Positives = 461/733 (62%), Gaps = 37/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 13  VEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSMYDSGFRPDRGYNKCS 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS   DP AA RYTE RL
Sbjct: 73  RVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +DTVDF  NYDG  QEP VL +R PN+LVNGG GIAVGMATNIP HNL
Sbjct: 133 DPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGSGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EVVDG +  +DNPD D    L ALM+ I+GPDFPT   ILG  GI +AY TGRGSI +R
Sbjct: 193 REVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGTQGIADAYRTGRGSIRMR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+ +  R  +VVTE+PYQVN   ++E IA L R+ +I  IAD+ DES+ R G R+
Sbjct: 253 AVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGIADIADESNSRGGMRI 312

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F VNM+AL    P    L  +++ +V  + +V+V
Sbjct: 313 VITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVDGVPRTLRLDQMVRHYVNHQIDVIV 372

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAHVL GLA A+ +LD V+ +IR SPN + AR  LM+          L
Sbjct: 373 RRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEARTGLME----------L 422

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL+++L +L  L R  I +EL  L  +I +  D+
Sbjct: 423 LD----------------IDEVQATAILDMQLRKLAALERQRILDELAELEAKIADLQDV 466

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L    R   I++ ELL + ++    RRT+I+    D+  ED I  ED+VVT++  GY KR
Sbjct: 467 LDKPERQREIVRTELLEITEKYGDDRRTKIIPYEGDVSIEDLIAEEDVVVTITRTGYAKR 526

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ STH  VLFF++ G VY+ K + LP  +
Sbjct: 527 TKTDLYRSQKRGGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNKGRVYRAKAYDLPEAN 586

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    ERI +++  P  E +    Y++  TK G V++++L+DF     
Sbjct: 587 RNARGQHVANLLAFQPDERIASVIQIPNYEVAP---YLILGTKKGLVKKSRLADFDSPRS 643

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G I + L   DE++     + E+D+LL +  GQ +RF  +   +R   GR + GV G+ 
Sbjct: 644 GGLIGINLREGDELVGAVLASAEDDLLLVSSDGQSIRFHANDEVLRPM-GRATSGVLGMR 702

Query: 729 LAKGDQVISMAIV 741
             +G +++S+ ++
Sbjct: 703 FNEGAELLSINVI 715


>gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92]
 gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054]
 gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17]
 gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
 gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
          Length = 838

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L K  +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--V 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
 gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
          Length = 878

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 356/893 (39%), Positives = 529/893 (59%), Gaps = 72/893 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G +A+I+NP+++ + L+ II GPDFPTG  ILGR GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQILGRAGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRRMLQVFIDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR + +  TAR++L +R     
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQERHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+++Q  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LTDIQADAILQMQLRRLTALEADKIRLEHEDLVAKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+ GII++EL  ++D     RRT I+     +ED D I  E  VV ++  
Sbjct: 468 DYKDILGRRERVFGIIQEELTQLRDRYPIERRTEILNIAAGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLS 663
           +P  S  A+G  ++ +L + + E ITT++   E  D+S      ++  T  G ++R +LS
Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITTLLAVSEFSDDSD-----LLMLTSGGFIKRTRLS 642

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721
            F  I  +G IA+ L+  D +  V      + +L+ T+ G  + F +S   +R   GR +
Sbjct: 643 AFSNIRSNGLIAINLEEGDALTWVRQAVPGDSVLIGTRAGMTIHFRLSDEELRPL-GRTA 701

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVR ++L  GD ++SM ++    AD               ++     +     +  ++ 
Sbjct: 702 RGVRSMNLRDGDALVSMDVLPVELAD---------------KVAQSSDDAADDDEGSAAS 746

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           EG               ++L  S  G GKR     FR+  R+G G+R       N+   L
Sbjct: 747 EG--------------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFR--NQGDEL 790

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           VA+  +   ++++LVS+KG ++R   + I   SRA  GV +    K + ++ V
Sbjct: 791 VALRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDSLLKV 843



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLG 596
           +V + S LG  KRVP++ +R Q+R G G  G+  R++ D +  L ++     +L  S  G
Sbjct: 752 LVASASGLG--KRVPVTQFRLQKRAGMGLRGMKFRNQGDELVALRVLGAGEELLLVSEKG 809

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            + +     +P    Q+R    + +  L++G+ +  ++  P    S
Sbjct: 810 VIVRTSADAIP---QQSRAATGVRLQKLDKGDSLLKVVLVPPQAES 852



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+ ++ ++E G+ KR    +F  ++R  +G +A   S+  E  A+      ND+D
Sbjct: 513 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            ++L SD+G    +P   +   SR  KG   V +    ++E + ++  + E
Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITTLLAVSE 620


>gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099]
 gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099]
          Length = 846

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 358/887 (40%), Positives = 509/887 (57%), Gaps = 90/887 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV     +
Sbjct: 12  EARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSH 71

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K + I GE MG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+DGDP AA RYT
Sbjct: 72  RKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYT 131

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   +  LL+D+ KDTVDF  NYD   QEP VL + +PN+LVNG  GIAVGM+TNIP
Sbjct: 132 EARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIP 191

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D  + +ID+PD  ++ LME ++GPDFPTGA I+GR  I +AY TGRG I +R
Sbjct: 192 PHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E+    RE+IV+TE+PYQ NKA ++E+IAE V E  I  I+DLRDESDR G R+V
Sbjct: 252 AEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIV 311

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E KRGA+ +V+ N+L     L+  F V  +AL   +P+  +L   L+ ++A R EVV R
Sbjct: 312 VECKRGANVEVVKNKLLE-NHLEKTFGVINLALVDGQPQVLSLKETLEEYIAHRREVVRR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L +A DRAH+L G   AV N ++VV +IR S   + A+  L Q +++        
Sbjct: 371 RSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAAL-QEAYD-------- 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S  Q   I+ ++L  LT +   +I +E   +  EI+    IL
Sbjct: 422 -----------------FSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSIL 464

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S   LL +IK EL  +KDE D  RRT I+E    +  ED I  E++ V ++   YVKR+
Sbjct: 465 ESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFVVMTEDDYVKRM 524

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S +  Q RGGKG  G  ++++D V  +F  +TH  +L F++ G VY+ K + +P    
Sbjct: 525 PISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGR 584

Query: 612 QARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            ARGK+ +NIL L+ GE IT I+    F +DE      +V  AT+HG V+R   S+F  I
Sbjct: 585 TARGKSAVNILDLDPGEDITAIVDTDAFGDDE------FVTMATRHGYVKRTAGSEFDNI 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA  L   DE++ VE      D+++ ++ G  +RF    +R   GRN+ GV GI 
Sbjct: 639 RSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAM-GRNARGVNGID 697

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V  +      D                                           
Sbjct: 698 LQGDDAVAGLVATDEGD------------------------------------------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   EQ +LTV++ G+GKRT   ++R  +R GKG+   D+      G +     V+
Sbjct: 715 --------EQDLLTVTQNGYGKRTPLSEYRTQSRYGKGL--IDIKTGERNGPVTTAKAVS 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +DQ++++S++G ++R  V+EI    R T GV++      + V SV+
Sbjct: 765 ADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVD 811


>gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
 gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
          Length = 907

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 345/894 (38%), Positives = 518/894 (57%), Gaps = 95/894 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KCAR+ GEVMG
Sbjct: 62  EMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYSKCARVVGEVMG 121

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+   A  ++
Sbjct: 122 KYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRMAPLAMEMV 181

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+ EV +G  
Sbjct: 182 RDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAEGVH 241

Query: 204 AVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
             +D+P+      LD L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R V + E+ 
Sbjct: 242 WALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNTEEI 301

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGA 318
            G R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G R+V+ LKR A
Sbjct: 302 KG-RMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSGRTGQRLVLVLKRDA 360

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              V+LN LY+++ LQ  F  NM+AL    P   +L   ++ ++  + +VV RRT YL  
Sbjct: 361 VPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQIDVVARRTAYLKR 420

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +A +R H+L GL  A+  ++EV+++IR S   E AR +LM+           +D      
Sbjct: 421 EAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLME----------FLD------ 464

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     + +VQ  AIL ++L RL  +    I +E N L  +I +  DIL+   R  
Sbjct: 465 ----------IDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYNDILAKPERQR 514

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR     YRA
Sbjct: 515 RIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIPEENVVVTVTHSGFIKRTKADEYRA 574

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS  ++G+ +
Sbjct: 575 QHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHV 634

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    + G IA++L
Sbjct: 635 ANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRSGKVKKTALAEYDSPRQGGLIAVRL 691

Query: 679 ------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAK 731
                 ++ DE++    C  ++DI+L ++ G  ++F  +  ++   GR + GV+G+    
Sbjct: 692 MTDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPMGRQTAGVQGMKFRD 751

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++++M +V   D+D D                                          
Sbjct: 752 GDELLAMDVVW-GDSDKD------------------------------------------ 768

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L V+++GF KR++  ++R+  R+G G++A  +++    G+LV    V+++D
Sbjct: 769 --------LLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEGR--GSLVGALIVSEDD 818

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           Q++ +   G +IR  V E++   R T+GV +    K++ ++S+    E +  D+
Sbjct: 819 QVMAIMKSGKVIRSDVAEVKRTGRNTQGVTLAKPDKNDEIISIALNAEKDDADD 872


>gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans]
 gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 834

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 345/828 (41%), Positives = 520/828 (62%), Gaps = 51/828 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL  M +     ++ YVKCA
Sbjct: 32  VIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCA 91

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEV+G YHPHG+A++Y+AL RM Q++SLR+ LI+GQGNFGS+DGD PAA RYTE RL
Sbjct: 92  KIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARL 151

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  LL D+ K+TV F PNYD + ++P VL A +PN+LVNG  GIAVGMATNIP HNL
Sbjct: 152 EKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNL 211

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E +D  +AVI NP+I +  +++II GPDFPT  +I+G  G+ +AY+TG+GSI IR    
Sbjct: 212 RETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIGGEGLISAYSTGKGSIRIRSKVE 271

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    RE IVVTEIPYQVNK  +LEKI +LV EK+I  I+++ D SDR+G RV I +K
Sbjct: 272 IEEKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHIK 331

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A VILNQLY+ T LQ  + + M+A+   KP+ F +  IL A+ A R EV+VRRT++
Sbjct: 332 KDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYAAHRREVIVRRTQF 391

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ N+++V+++IR S NP  A+++LM R               
Sbjct: 392 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIR--------------- 436

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ+ AILE+RL RLT L    I +EL  +   I +  DIL+  S
Sbjct: 437 -----------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKPS 485

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVP 552
           R+  I+  EL  V D+    R+T I    ++      ED I  E++V+ +++  ++KR+P
Sbjct: 486 RVNEIVCTELQEVGDKYGNKRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLP 545

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  ++ Q+RGGKG  G+  + +D +  +    TH +++FFS++G VY  K + LPI S +
Sbjct: 546 IDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKE 605

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK+L  I++L + E I+++  F  ++   + L V   T+ G ++R +L +F  + +SG
Sbjct: 606 ARGKSLKAIINLREDEYISSVFTFRGEDMDKDLLLV---TRKGFIKRIQLKEFGNVKKSG 662

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ VE+ T ++++++ +K G  +R   + IR   GR + GV G+ LA+ 
Sbjct: 663 IIAIGLREGDELIKVESMTDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAED 721

Query: 733 DQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV-EGN 784
           D ++ ++       I + ++  Y +R+ + +  +A+ R   G      + KN  SV  G+
Sbjct: 722 DAIVGLSKYKEGEDIFVVSEEGYGKRLGF-EEFAAKGRGGKGMAYLKITEKNGFSVGTGS 780

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +           E  I+ ++++G   R +++D     R+  G+R  D+
Sbjct: 781 VG---------SEDEIILITQQGMTIRINAFDISKLGRTAVGVRIVDL 819



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 18/225 (8%)

Query: 685 LSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQV-ISMAIVL 742
            + E    + +I++     Q + R PI   +    R   G++G+S  + D + I  A + 
Sbjct: 520 FNAEDLIADEEIVIQITYDQFIKRLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMT 578

Query: 743 HADADYDERICYMKHMSAQRRLISGDT------EEITSLKNDSSVEGNISEERCQELKLK 796
           H +  +   I  +  M A    I+         + I +L+ D  +  ++   R +++   
Sbjct: 579 HDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYI-SSVFTFRGEDM--- 634

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++ +L V+ KGF KR    +F   N    GI A  + + +E   L+ V  + D D++++ 
Sbjct: 635 DKDLLLVTRKGFIKRIQLKEF--GNVKKSGIIAIGLREGDE---LIKVESMTDKDEVMIF 689

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           S KG  +R+  N IR   R   GV     A+D+ +V + + +E E
Sbjct: 690 SKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGE 734



 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 32/213 (15%)

Query: 536 EDM---VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV---MRDEDFVTDLFIVSTHTSV 589
           EDM   ++ V+  G++KR+ L  +     G   +SG++   +R+ D +  +  ++    V
Sbjct: 632 EDMDKDLLLVTRKGFIKRIQLKEF-----GNVKKSGIIAIGLREGDELIKVESMTDKDEV 686

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + FS  G   +       I   Q R  + +  + L + + I  +  + E E    +++VV
Sbjct: 687 MIFSKKGLALR---IEGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGE----DIFVV 739

Query: 650 FATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCT--QENDILLTTKLGQC 705
             ++ G  +R    +F    R GK    +K+  ++   SV T +   E++I+L T+ G  
Sbjct: 740 --SEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKNG-FSVGTGSVGSEDEIILITQQGMT 796

Query: 706 VR---FPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +R   F IS +    GR +VGVR + L   D+V
Sbjct: 797 IRINAFDISKL----GRTAVGVRIVDLKDNDKV 825


>gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207]
 gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475]
 gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207]
          Length = 838

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY T RGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97]
 gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
          Length = 838

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+ F   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTAF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
 gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
          Length = 885

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 356/905 (39%), Positives = 517/905 (57%), Gaps = 100/905 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   +  + KCA
Sbjct: 32  VEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFSKCA 91

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+ AIYDAL R+ Q WS+R  L+ GQGNFGS   D  AA RYTEC++
Sbjct: 92  RVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTECKM 151

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF  NYDG  QEP++L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 152 APLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPPHNL 211

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +++PD      L AL+  I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 212 REVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQILGHRGIEDAYRTGRGSITMR 271

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+PYQVN   +  KI E+VRE RI  IADLRDE S R G R+
Sbjct: 272 AVVEVEEIQG-RQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAGQRL 330

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P   +L   ++ +   + +V+V
Sbjct: 331 VIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSLDAFVRHWTMHQIDVIV 390

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL +   R H+L GL  A+  LDEV+ +IR SP+ + AR  LM+           
Sbjct: 391 RRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLME----------- 439

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + EVQ  AIL+++L RL  L +  I +E  ++   I +  DI
Sbjct: 440 ---------------LLEIDEVQATAILDMQLRRLAALEQQRIMDEHAAIEARILDYQDI 484

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL ++ +     RRT I+    +M  ED I  ED+VVT++  GY KR
Sbjct: 485 LASEERQRSIVRSELGAIVERYGDERRTTILPFDGEMSVEDLIPEEDVVVTITRGGYAKR 544

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQRRGGKG  G  +R++D V   F+ +TH  +LFF++LG VY+ K + LP G 
Sbjct: 545 TRTDNYRAQRRGGKGVRGAQLREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKGYELPEGG 604

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G+ + N+L+   GE+I  ++   + D++     Y+V ATK G V++ +L+++    
Sbjct: 605 RDAKGQHVANLLAFQPGEKIAQVLALRDYDQAD----YLVLATKRGLVKKTRLAEYDSSR 660

Query: 670 RSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
             G IA+ L +      DE++S      E+D+LL ++ GQ +RF  +  A+R  A R + 
Sbjct: 661 TGGVIAINLRTDDGGAVDEVVSARIVGAEDDLLLVSRKGQSIRFTATDEALRPMA-RATS 719

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+     D++++M +V   DAD                                   
Sbjct: 720 GVTGMKFRADDELLAMDVV-ETDAD----------------------------------- 743

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +  V+E GF KRT+  ++R+  R G GI+  ++  +   G LV
Sbjct: 744 -----------------LFVVTEGGFAKRTALGEYRVQGRGGLGIKVANL--VEARGDLV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V+ +D+++++ ++G ++R  V+E+    R T+GV        +R++++    E  +
Sbjct: 785 GALVVDSDDEVLVIMERGKIVRSAVDEVTRTGRNTQGVTFAKPDAGDRIIAIALGEERAV 844

Query: 903 VDEAE 907
            D  E
Sbjct: 845 ADAGE 849


>gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 854

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 354/849 (41%), Positives = 522/849 (61%), Gaps = 94/849 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ +  ++ K 
Sbjct: 91  GIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHRKS 150

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  L++G GNFGS+DGD  AA RYTE R
Sbjct: 151 ARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTEAR 210

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L+ + KDTVDF  NYD S +EP VL +R+PN+LV+GG GIAVGMAT+IP HN
Sbjct: 211 MSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHN 270

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE +D  +A+ +NP+ID+  LME + GPDFPTGA+ILG  GIK+AY TG+GSI IR ++
Sbjct: 271 LGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIPIRSIA 330

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+ S  + +I+VTEIPY+V K A++EKIAELV++K+I  IADLRDES R+G R+VI++
Sbjct: 331 KIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIVIDV 390

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+  +  V+LN+LYR T+LQ  ++VN VAL   +P+   L   L+ ++  +EEVV RR K
Sbjct: 391 KKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVVTRRLK 450

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+DR H+L GL IAV N+DEV+ II+ S     A+  L +R +N           
Sbjct: 451 FDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR-FN----------- 498

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E QT+AI+++RL RLTGL  +++  E+  L  EI+    IL++ 
Sbjct: 499 --------------LTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANH 544

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S L+ +I +EL  +K++ +  RRT+I   ++G +   DED I + D+V+T S  G+VKR+
Sbjct: 545 SELIKLIVKELTEIKEKYNDKRRTQINYEIQGTIT--DEDLIPQRDIVITTSAKGFVKRM 602

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ QRRGG G   +   D+D +  +   +THT +L FS+   VY+ +   +P  S 
Sbjct: 603 DLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSR 662

Query: 612 QARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           Q++G A INI   L + +GERI +++P    ++   + Y+  ATK+G +++ +L+++ +I
Sbjct: 663 QSKGVAFINIIPSLRVKEGERIVSMLPV---DTYDEDHYLFTATKNGIIKKTRLTEYERI 719

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++     T E+ ILL     + V+F     R  + R + GV+GI+
Sbjct: 720 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 778

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L     V S +                                       +S EG     
Sbjct: 779 LDSHQTVSSTS---------------------------------------TSQEG----- 794

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + ILT+ +KGFGK T    FR+  R GKG++  + SK+   G +V    VN
Sbjct: 795 ---------ELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGIN-SKL--AGDIVFARFVN 842

Query: 849 DNDQIILVS 857
             D+++L+ 
Sbjct: 843 PQDELLLLQ 851


>gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162]
 gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162]
          Length = 837

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/903 (39%), Positives = 517/903 (57%), Gaps = 96/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EMQ SY+ YA++VI+GRA+P++RDG+KPV RRIL+     G   ++ YVK A
Sbjct: 16  IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYASYDAGYRPDRSYVKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   E MG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS   DP AA RYTE RL
Sbjct: 76  KPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L  + ++TVDF PNYDG  QEP VL AR PN+L+NG GGIAVGMATNIP HNL
Sbjct: 136 TPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSGGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +     ++N D D    L+A ME ++GPDFPT  +I+G  GIK+AY+TGRGSI +R
Sbjct: 196 REIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGGQGIKDAYSTGRGSIRMR 255

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV  +E+ S    ++V+TE+PYQVN   ++  IAE VR+ +I  I+ + D+ SDR G R+
Sbjct: 256 GVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGISKIEDQSSDRVGMRI 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +++ +VA + +V+V
Sbjct: 316 VVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVAHQLDVIV 375

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+LL KA +RAH+L GL  A+  LDEV+ +IR S   E AR  LM+          L
Sbjct: 376 RRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIARTGLME----------L 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q  AIL+++L +L  L R  I +EL  +  EI +  DI
Sbjct: 426 LD----------------VDELQANAILDMQLRKLAALERQKIIDELAEIEREIADLKDI 469

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L    R   I++ EL  + ++    RRT+I+    D+ DED I RED+VVT++  GY KR
Sbjct: 470 LDKPERQRAIVRDELGEIVEKFGDDRRTKIIAADGDVTDEDLIAREDVVVTITETGYAKR 529

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 530 TKTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTKGRVYRAKAYELPEQS 589

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    ERI  ++     +   +  Y+V ATK+G V++++L DF   NR
Sbjct: 590 RTARGQHVANLLAFQPEERIAQVIQI---KGYDDAPYLVLATKNGLVKKSRLEDF-DSNR 645

Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
           SG I A+ L   DE++     + E+D+LL +K  Q +RF  +  A+R   GR + GV+G+
Sbjct: 646 SGGIVAINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEALRPM-GRATSGVQGM 704

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                DQ++++ +V                                              
Sbjct: 705 RFNGDDQLLALNVV---------------------------------------------- 718

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              QE    + ++L  +  G+ KRT+  D+ +  R GKG+         + G LV    V
Sbjct: 719 ---QE----DTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFDP--KRGDLVGALIV 769

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES--EIVDE 905
           ND  ++  ++  G +IR    ++R A R TKGV + +  +   ++++ R  +   E  DE
Sbjct: 770 NDETELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGTTLLAIARNADETDETSDE 829

Query: 906 AES 908
            E 
Sbjct: 830 TEQ 832


>gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
          Length = 838

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 346/898 (38%), Positives = 548/898 (61%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I  E++ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++GV  +  Y K A
Sbjct: 18  IKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILYGMNELGVYSHSSYKKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+++IY+A+ RMAQD++ R  L++G GN GS+DGD  AA RYTE ++
Sbjct: 78  RIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLGSIDGDNAAAMRYTEVKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL ++ ++TVDF  NYDGS +EPV L + +PN+LVNG  GIAVGMATNIP+HNL
Sbjct: 138 SKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNGSTGIAVGMATNIPSHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  +  IDN +ID + LM+ I+GPDFPTG  ILG +G+K AY TGRG I +R  + 
Sbjct: 198 SEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEILGISGLKEAYETGRGRIFVRSKTE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           I  +  ++  I++ EIPYQ+ K +++EKIA LV+EK I  I DLRDES+  +G R++IEL
Sbjct: 258 IIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITDLRDESNNSRGMRIIIEL 317

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++     +ILN LY++T LQ+ F  NM+AL    P+  +L  +L+ F  FR +V+ R+ K
Sbjct: 318 RKDVEPKIILNNLYKHTQLQTSFCFNMIALVNGVPKIVSLKNMLEEFFLFRIDVINRQKK 377

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA+ + H++  LAI + ++++V++II+ S + + A++ +M  ++N           
Sbjct: 378 FELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNIMI-NYN----------- 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                           E+Q++AILE+ L ++T L    +  E   L ++I EC +I++S+
Sbjct: 426 --------------FDEIQSKAILEMSLQKITNLEIKKVIKEEEILKLKIYECENIINSQ 471

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           ++   I+K+ELL +K++    R++ I  E  L +E+E  I +E +++TV++ GY+KR+ L
Sbjct: 472 TKKEKILKKELLKIKNQFQDKRKSIISNEQYLTVENESLINKETILITVTNKGYIKRLNL 531

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+ Q RGGKG SG+ M++ DF+  + I STH   LFF++ G +Y+ K + +P+GS  +
Sbjct: 532 DTYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQLKGYEIPLGSRYS 591

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  L+N+L L + E +T++    + +   N  Y+V  TK G ++RN L DF  + R+GK
Sbjct: 592 KGIPLVNLLPLEKNEFLTSLTSVKDFKEEKN--YLVLVTKKGLIKRNSLKDFENVRRNGK 649

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA  L + DE+L V   T + DI+L    G+ +RF    IR   GR S GVRGI +   +
Sbjct: 650 IAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQ-TGRKSSGVRGIKIKTEE 708

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I M +V                          D+E                       
Sbjct: 709 EIIGMTVV--------------------------DSE----------------------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +Q IL ++EKG+GK T + ++R   R GKG +   ++  N  G LV +  +  N+++
Sbjct: 720 ---KQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRN--GKLVRLLTIYRNEEL 774

Query: 854 ILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           I+ SD G ++R+   +I +  S+ T+G ++ S  + ++V SV  I+++ I  E  + E
Sbjct: 775 IIFSDHGKVVRIDTKQIPLTKSKVTQGNILISLEESDKVSSVALIKKTLIKKEESNDE 832


>gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
 gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
          Length = 914

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 367/883 (41%), Positives = 521/883 (59%), Gaps = 100/883 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  + + + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV   + Y
Sbjct: 7   ENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPY 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+  ++GQGNFGS+DGD  AA RYT
Sbjct: 67  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL DL K+TVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 127 EARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+V G + +++N +  L+ +M  I+GPDFPTG +I G+ GI  AY TGRG + IR
Sbjct: 187 PHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGRGRVKIR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIEK +  ++ IV+ E+PYQ NKA ++E+IA+LV+EK+I  I+++RDESDR G RVV
Sbjct: 247 AKTHIEKKAS-KDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDGIRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T++++ F V M+A++G +P+ FTLI +LK F+  R+ V++R
Sbjct: 306 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHRKTVIIR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+ N+DEV+ +IR S +   AR  LM R           
Sbjct: 366 RTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL+RLTGL R+ I  EL  +  EIK    IL
Sbjct: 415 ---------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S   + GIIK ELL +KD+   PR T IV+   D++ ED I  E+MVVT++H GY+KRV
Sbjct: 460 KSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTITHRGYIKRV 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKGR  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS 
Sbjct: 520 PSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEGSR 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N++ L   E+I  I+P  + + S +   +VF T++G V+R  LS+F  I   
Sbjct: 580 TAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKS---LVFFTRNGIVKRTNLSEFKNIRSL 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ LD             E+D L+T  +      P SA            +G +L+ 
Sbjct: 637 GIRAISLD-------------EDDTLVTALIA-----PNSA------EEMQNYKGGALSG 672

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN---ISEE 788
            D                              L  G+ EEI        +EG+   IS+E
Sbjct: 673 DD------------------------------LDGGEAEEILEQTEQDILEGSEDEISDE 702

Query: 789 RCQE--------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             Q+            E  +   ++KG   + +    R   R  +G++     K  E G 
Sbjct: 703 ISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGI---KFKEKGD 759

Query: 841 LV--AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            V  A F ++D  +I+ VS KG   R   +E R+ +R  KGV+
Sbjct: 760 EVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVI 802



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 57/206 (27%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADY 748
            T EN + + TK G C++F ++ IR   GR + GV+GI    KGD+VI  A         
Sbjct: 716 STNENMLFIATKKGMCLKFNLNKIRQM-GRIARGVKGIKFKEKGDEVIGAA--------- 765

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                           I  D +EI                            L+VS+KG 
Sbjct: 766 ---------------FILSDMQEI----------------------------LSVSQKGI 782

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R++NR GKG+    ++  N  G L+ V  V++   ++ ++  G +IRV + 
Sbjct: 783 GKRTTASEYRLTNRGGKGVICMKLT--NRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQ 840

Query: 869 EIRIASRATKGVVIFSTAKDERVVSV 894
            IR A R T GV++ +   D+ VVS+
Sbjct: 841 SIRKAGRNTSGVIVVNVEGDD-VVSI 865



 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ +
Sbjct: 504 ENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESF---FTSNTHDTLMFI 560

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V +     DE+++++
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMAI 601


>gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3]
 gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4]
          Length = 891

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/907 (39%), Positives = 518/907 (57%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S+++  Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQRRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S   D+ V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A)
           (DNA topoisomerase II) [Deinococcus deserti VCD115]
          Length = 811

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 360/892 (40%), Positives = 531/892 (59%), Gaps = 90/892 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+  G+  N+K+ K 
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+++IYDA+ R+AQ W++R  ++  QGNFGS+DGDPPAA RYTE R
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  L+ DL K+TVD +PNYD + +EP VL A  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID+P++ LD LME + GPDFPTG  I  +TGI+ AYATG   + +RG +
Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRIT-KTGIREAYATGHSGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313
            IE+ +G R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR+   R+V+E
Sbjct: 242 RIEEKNG-RNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQ+ ++V  +++ G +P    L+  ++ F+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQTTYTVINLSIVGGEPRVLPLLNTMQYFLDHRADVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAHVL GL  A+ ++DEV+ +IR S     AR  LM R             
Sbjct: 361 RYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q++AIL++RL RL GL R+ ++ E + L   I+    IL  
Sbjct: 408 -------------FGLTEIQSQAILDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+ +++D     RR+ I E   D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 EKLLWREIKKEIRAIRDNYGDERRSTITELEEDIGKEDLIAVEDMVITMTKAGYLKRTKL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP     A
Sbjct: 515 DAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574

Query: 614 RGKALINIL-SLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G  + N+L SL + E I +++     DE        +FAT+ G V++  ++++  I  +
Sbjct: 575 KGTHIRNLLPSLREDENIASVLSVGGFDEPGC----FIFATRKGVVKKTLITEYGNITSA 630

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ V      + ++L T+ G+ +RF    +R   GR + GV GI L +
Sbjct: 631 GLIAINLQPGDELIGVGIVNDIDHVVLATRNGKAMRFESDEVRA-TGRATQGVIGIRLRE 689

Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           G  D V+SMA+V   D                                            
Sbjct: 690 GEDDAVVSMALVPGGD-------------------------------------------E 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             EL       L VSE G GKRT   D+    R G G+   DV++  + G LV +  V  
Sbjct: 707 ASEL-------LAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTE--KTGKLVTLARVAG 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           N++++++++KGT+IR  V E+R+  R  +GV + + A+ + V+S   IR  +
Sbjct: 758 NEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIAERDSVISAFPIRRED 809


>gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836]
 gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836]
          Length = 907

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 356/917 (38%), Positives = 517/917 (56%), Gaps = 91/917 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  IS   +    I  + +  EMQ SYL YA+ VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MTETPISPGHDR---IEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+RI G+VMG+YHPHG++AIYD L R+AQ W +R  +I+ QGNFGS 
Sbjct: 58  YDGGYRPDRGFSKCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  ++ D+ ++TVDFRPNYDG  QEPV+L +R+PN+LVNG  
Sbjct: 118 GNDPAAAMRYTECRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSA 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV       ++NPD      L A ME I+GPDFP GA+I+G  G
Sbjct: 178 GIAVGMATQIPPHNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIVGYKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +R V  IE+ +  R  +VV+E+PY VN   + +KIAELV   ++  I
Sbjct: 238 IDDAYRTGRGSVTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RD+ S R G R+VI LKR A   V+LN LY++T LQ  F  NM+AL    P   +L 
Sbjct: 298 ADIRDDTSSRTGQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVDGVPRTLSLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +  ++  + EV+ RRT+Y L +A   AHV  G   A+  LDEV+ +IR SP+ + AR 
Sbjct: 358 LFITHWIDHQIEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEAR- 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       + LI L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 417 ------------QGLISLLD-------------IDEIQAQAILDMQLRRLAALERQKIID 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            LN L   I +  DIL+   R   I++ EL  + D+    RRT I+    D+  +D +  
Sbjct: 452 RLNELEAVIADLEDILADPVRQRHIVRDELAEIVDKFGDDRRTTIIAADGDLSVQDLVPD 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR Q RGGKG  G  MR ED +   F  + H  +LFF++ 
Sbjct: 512 EDVVVTITRGGYAKRTKTDLYRVQNRGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTK 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654
           G VY+ KVW+LP  +  A+G  +  +LS    E I  ++   + D++     Y+V ATK 
Sbjct: 572 GRVYRAKVWQLPESARDAKGSHVAGLLSFQPDEEIAQVLTLRDYDQAD----YLVLATKK 627

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G V++  L D+    +SG IA+   ++ DE++  +  + E+D+LL +K GQ +RF  +  
Sbjct: 628 GLVKKTPLRDYDSARQSGIIAVNFREADDELIGADLASAEDDLLLVSKKGQSIRFTANDE 687

Query: 714 RVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           ++   GR + GV G+    GD+++SM++                        I   +EE 
Sbjct: 688 QLRPMGRATSGVTGMKFRAGDELLSMSV------------------------IRAGSEED 723

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T                        QF+ TV++ G+ KR+   ++R   R G GI+A  +
Sbjct: 724 T------------------------QFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKL 759

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  +E G+LV    V D+DQ++ +   G ++R  V+ + +  R T GV        + VV
Sbjct: 760 N--DERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSVPVKGRDTMGVRFAGVGASDAVV 817

Query: 893 SVERIRESEIVDEAEST 909
           ++ R  +  + DE ++ 
Sbjct: 818 AIARNTDLTVADELDAA 834


>gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
          Length = 910

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 350/898 (38%), Positives = 513/898 (57%), Gaps = 96/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M   G   ++ Y KCA
Sbjct: 41  VAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGYSKCA 100

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNFGS   DPPAA RYTECR+
Sbjct: 101 RPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYTECRM 160

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+
Sbjct: 161 MPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIPPHNM 220

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +G    +D+P+      L+AL+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 221 RELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 280

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 281 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRTGQRL 339

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 340 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIE 399

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L GL  A+  +DEV+R+IR S   E AR +LM+           
Sbjct: 400 RRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLME----------F 449

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L RL  + R  I +E   L  +I +  DI
Sbjct: 450 LD----------------IDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDI 493

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 494 LAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 553

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 554 TKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 613

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 614 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRTGKVKKTALAEYDSPRQ 670

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C   +DI+L +K G  ++F     ++   GR + 
Sbjct: 671 GGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA 730

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+     D++++M +V                                         
Sbjct: 731 GVQGMKFRGDDELLAMDVV----------------------------------------- 749

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               E+  Q+L       L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 750 ---PEDSKQDL-------LVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLV 797

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               V+++DQ++ +   G +IR  V E++   R T+GV +    K + ++S+ R  E+
Sbjct: 798 GALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 855


>gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 850

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 349/899 (38%), Positives = 528/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 12  IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RYTEC+L
Sbjct: 72  RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    ++DNPD D    L+A ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 192 NELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+ SG R+ IV+TE+P+QVN   ++  IAE V   +I  I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVASGKIAGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVEHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR  L          K+L
Sbjct: 371 RRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ D                +Q  AIL ++L +L  L R  I +EL  +  EI +  DI
Sbjct: 421 LDVDD----------------IQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + D+    RRT I+    D+ DED I RE++VVT++  GY KR
Sbjct: 465 LAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIARENVVVTITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ G VY+ K + LP G 
Sbjct: 525 TKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G V++++L+D+     
Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ++SM++V      +D     +          SG   + T++              
Sbjct: 702 RGDDQLLSMSVV------HDGEFLLVA--------TSGGYGKRTAI-------------- 733

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E++  T    G G  T    F+ + + GK               L+    V++
Sbjct: 734 -------EEYT-TQGRGGLGVMT----FKYTPKRGK---------------LIGAISVDE 766

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D+I  ++  G +IR  V++IR +SRAT GV + +   D  +++++R  E +  ++A++
Sbjct: 767 DDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLGDDVELLAIDRNVEEDGEEDAQA 825


>gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
 gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
          Length = 850

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 323/723 (44%), Positives = 476/723 (65%), Gaps = 42/723 (5%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +  +  +K + K A   G+V+G
Sbjct: 27  EMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDNLTADKPFKKSATCVGDVLG 86

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           +YHPHG+A++YDAL R+AQD+S+R +L++G GNFGS+DGDPPAA RYTE RL K +  +L
Sbjct: 87  RYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNFGSIDGDPPAAYRYTEARLSKISDEML 146

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ KDTVD+ PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL EV++  +
Sbjct: 147 RDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVINATI 206

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            V+DNP+ +L  LME I+GPDFPT  +I+GR+GI+ AYATGRG + +R  +  E+   DR
Sbjct: 207 CVLDNPEAELCDLMEHIKGPDFPTKGIIMGRSGIRAAYATGRGRLCVRARTEFEEFGKDR 266

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            +I+VTEIPYQVNK  +++ +A+ V +KR+  I+D+RDESDR G R+VIELKR A+  V+
Sbjct: 267 TRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGISDIRDESDRNGMRIVIELKRDANPQVV 326

Query: 324 LNQLYRYTSLQSLFSVNMVAL---NG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           LN+L+  T LQ+ F++NM+AL   NG  +P   +L  IL  ++A++E+V++RRTKY L K
Sbjct: 327 LNRLFAQTQLQTTFAINMLALVEVNGKLQPRILSLRHILDEYIAYQEQVIIRRTKYDLKK 386

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A++RAH+L GL IA  N+DEV+ IIR     + A+ +LM+R                   
Sbjct: 387 AQERAHLLEGLLIAQDNIDEVIHIIR--SRYDDAKEKLMER------------------- 425

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    L +VQ +AIL++RL  L GL R+ + NE   L   I     +L S   L G
Sbjct: 426 -------FSLDDVQAQAILDMRLKALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRG 478

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           ++K EL++++D+    R T I +   +++ ED I  E+ V T++  GY+KR+P S Y+ Q
Sbjct: 479 VLKDELIAIRDKYGDERVTEIQDVEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQ 538

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGGKG + +  ++ED+V  +F  STH  +LFF++ G V+++K +++P     A+G  L+
Sbjct: 539 RRGGKGITAMATKEEDYVDTVFTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKGTNLV 598

Query: 620 NILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           NIL +  GE++T ++    FPED       Y+   T++G V+R +LS      ++G   +
Sbjct: 599 NILPVESGEKVTAMIHLREFPEDR------YLAMVTRNGTVKRIQLSAINTARKAGIRCI 652

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            LD  DE+++V     +  IL+ T  G  + F  + +R   GR++ GVRGI L +GD VI
Sbjct: 653 TLDEGDELIAVRETDGDQAILIATHDGMSICFKETDVRCM-GRDACGVRGIKLREGDYVI 711

Query: 737 SMA 739
             A
Sbjct: 712 GAA 714



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 66/327 (20%)

Query: 603 VWRLPIGS--PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           + RLP  +   Q RG   I  ++  + + + T+       ++  + +++F T  G V R 
Sbjct: 527 IKRLPASTYKTQRRGGKGITAMATKEEDYVDTVF------TASTHDFILFFTNKGRVHRK 580

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVET------------CTQENDILLTTKLGQCVRF 708
           K     QI  +G++A K  +   IL VE+              ++  + + T+ G   R 
Sbjct: 581 K---GYQIPEAGRMA-KGTNLVNILPVESGEKVTAMIHLREFPEDRYLAMVTRNGTVKRI 636

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +SAI         G+R I+L +GD++I++      + D D+ I    H          D
Sbjct: 637 QLSAINTA---RKAGIRCITLDEGDELIAVR-----ETDGDQAILIATH----------D 678

Query: 769 TEEITSLKNDSSVEGNISEERC--QELKLKE-------------QFILTVSEKGFGKRTS 813
              I   + D    G    + C  + +KL+E               +L V+E G+GKRT 
Sbjct: 679 GMSICFKETDVRCMGR---DACGVRGIKLREGDYVIGAARAKAGHQVLMVTENGYGKRTD 735

Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
             ++  S    NR G G++  +V++  + G +V V  V+D D I++++D G +IR+ V+ 
Sbjct: 736 MDEYIRSDGPQNRGGYGLKGYNVTE--KTGPVVGVKVVSDADDILVINDAGVIIRMAVSG 793

Query: 870 IRIASRATKGVVIFSTAKDERVVSVER 896
           I    RA +GV + +  +  +V+S  R
Sbjct: 794 ISTYGRAAQGVKLMNLDEGVKVISFAR 820



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           + T++  G+ KR  +  ++   R GKGI A    + + +     VF  + +D I+  ++K
Sbjct: 518 VFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVD---TVFTASTHDFILFFTNK 574

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           G + R    +I  A R  KG   V I      E+V ++  +RE
Sbjct: 575 GRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLRE 617


>gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2]
          Length = 891

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/907 (39%), Positives = 518/907 (57%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S+++  Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S   D+ V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
 gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
          Length = 838

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 348/892 (39%), Positives = 524/892 (58%), Gaps = 101/892 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  + ++    KCA+I 
Sbjct: 15  ISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCAKIV 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RYTE ++ + 
Sbjct: 75  GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARL 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +++D+ KDTVDF PN+D S QEP VL  ++P +L NG  GIAVGMATN+P HNL E+
Sbjct: 135 AESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNLREI 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
                A IDNPDI +D L + I+GPDFPTG +I G+ GI+ A+ TGRG I++RG  +IE 
Sbjct: 195 AQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKILVRGRFNIEV 254

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRG 317
               +E I+ TE+PYQVN  A++ KI EL REK I  IA + DE SDR G R+VIELKRG
Sbjct: 255 DKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIELKRG 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A V+LNQL+  T+LQS F V  +AL G +P+  TL  ++  FVA R+EVV RR ++ L
Sbjct: 315 AIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRVRFDL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA +RAH+L  L +A+ N+DEV++IIR S +  +A+  LM+R                 
Sbjct: 375 KKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMER----------------- 417

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        +VQ +AI++++L RLT L  +D+R EL  L + I+   D+L+   ++
Sbjct: 418 ---------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKI 468

Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L +IKQE   + ++    RRT IV + + ++  ED I +E MVV VS+LGY+KRVP++ Y
Sbjct: 469 LALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAY 528

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q RGGKG +   + ++DF+  +F  STH  ++F ++ G  Y  KV  +P  S  +RG 
Sbjct: 529 KRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGS 588

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + ++L+++  E ITTI+   E  S   + Y++ AT  G V++ +   F      G IA+
Sbjct: 589 HIKSLLAVSSDEEITTIVSLKEFSS---DTYLLMATAGGIVKKVQTDSFQNAKTRGIIAI 645

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           KLD  D+++S    T +++++L T+ GQ +R   + IR   GR S GV GI L+ GD++ 
Sbjct: 646 KLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIR-DQGRASHGVIGIRLSGGDELT 704

Query: 737 SM------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    +++ ++  Y +R+ +    S   R   G                       
Sbjct: 705 GALRINNGKLLVMSENGYGKRVDF-SEFSPHGRGTGG----------------------- 740

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q + TV+EK                              E+  L+A   V D+
Sbjct: 741 -------QKVYTVTEK----------------------------TGEVVGLLA---VADD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESE 901
           D+I+ ++ +G  IRV V+ I +  RA +GV I      ++++ ++ + RE E
Sbjct: 763 DEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQLIGLDVVAREDE 814


>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana]
 gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 950

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 366/925 (39%), Positives = 532/925 (57%), Gaps = 101/925 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++S DE     I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G
Sbjct: 93  VVSGDESR---IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 149

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DP
Sbjct: 150 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 209

Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIA
Sbjct: 210 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 269

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY T
Sbjct: 270 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 329

Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GRG +V+RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RD
Sbjct: 330 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 389

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF
Sbjct: 390 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 449

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR  VV RR ++ L+ A+ R H++ G+ + + N+DEV+ +I  + +  +A   L    
Sbjct: 450 IDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAAL---- 505

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                          S Y         LSE Q  AILE+ L RLT L R    +E +SL 
Sbjct: 506 --------------QSEYG--------LSEKQAEAILEITLRRLTALERKKFTDESSSLT 543

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540
            +I +   +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++
Sbjct: 544 EQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 603

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  GYVKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY 
Sbjct: 604 AVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 663

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
            + +++P  S  A G  L+ ILS+++GER+T+I+P   F ED       Y++  T +G +
Sbjct: 664 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 717

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  F  I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  +
Sbjct: 718 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS 777

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RN+ GV  + L   D++ SM I+                                SL+ 
Sbjct: 778 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 806

Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           D        EE+ ++  L +Q    ++L V E G+GKR     FR S  +  G+      
Sbjct: 807 D-------MEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGY--- 856

Query: 834 KINEIGALVAVFPVN--------DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           K  E   L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++   
Sbjct: 857 KFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILM-- 914

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
               R+    +I+ + ++  A+  E
Sbjct: 915 ----RLDHAGKIQSASLISAADEEE 935


>gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
          Length = 841

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 354/890 (39%), Positives = 518/890 (58%), Gaps = 94/890 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EHI+   EE+E  I  + ++ EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +
Sbjct: 5   EHIV---EEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMYE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  N  + K AR+ G+V+GKYHPHG+A++YDAL R+AQD+SLR  ++  QGNFGS+DG
Sbjct: 62  MGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSIDG 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE ++ +    +L D+ KDTVDF PNYD S QEP VL A +P +L NG  GI
Sbjct: 122 DPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL E+ D   AVI+NPDIDL+ LM+ I+GPDFP+GA+I G+ GI +A++
Sbjct: 182 AVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIICGQQGIIDAFS 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG IV R    IE+     +QI+ T+IPYQVNKA +++KI EL R   +  I+ +RDE
Sbjct: 242 TGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDEL-RRNDLPAISAVRDE 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR+G R+V+ELK+G+   ++LN L+  T LQS F+VN +AL   +P+  +L  IL  ++
Sbjct: 301 SDREGIRIVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALVNGRPQLLSLKEILVHYI 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +RE+VV RRT+Y L KA +RAH+L+GL I + N+DEV+RII+ S +   A  E +Q+++
Sbjct: 361 NYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESED-NAAASEGLQKAF 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AI++++L RL+ L  + I  EL  L +
Sbjct: 420 G-------------------------LTKIQADAIIDMKLGRLSHLETEKILEELAELEV 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVT 541
           +I    D+L+ R ++LG++ QE   +  +    R T I    +   + ED I  E++VV 
Sbjct: 455 KIAYYKDLLADRRKILGVVAQETRELAAKYGDKRLTEIQRAEIGQTQVEDFIKNEEVVVV 514

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G++KRV    YR+Q RGG G  G  + ++DFV  L++ STH  V+F SS G  Y  
Sbjct: 515 ISNKGFIKRVVAEEYRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWI 574

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV  +P GS  ++G ++  ++ +  GE I++I+ F E     ++ Y+   TKHG  ++  
Sbjct: 575 KVHEIPEGSKVSKGSSIKQLIDITDGEEISSIINFTE---FHDDQYLFMVTKHGVTKKVG 631

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F      G  A+ LD  D ++  E  T  +D++  T  G+ +R     +R   GR S
Sbjct: 632 LPAFRNAKSRGVRALFLDEGDIMVQSELMTDGDDMMFVTAGGRGLRIAGGDVRAM-GRAS 690

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   D VI +                                    LK D S 
Sbjct: 691 RGVRGMKLLGDDTVIGL------------------------------------LKVDDS- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGA 840
                           + IL ++EKG GK+ +  +F   NR G+G +   + +I E    
Sbjct: 714 ----------------RRILMITEKGQGKQVNFSNF---NRHGRGTQGQLIYRIKEKTSY 754

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG--VVIFSTAKD 888
           LV    VND + +++++ +G  IR+ VN I    R   G  VV     KD
Sbjct: 755 LVNALAVNDENDVVVITMQGQTIRIHVNLISTQGRNASGVRVVALKNPKD 804


>gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1]
 gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2]
 gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1]
 gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 891

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/907 (39%), Positives = 518/907 (57%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S+++  Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S   D+ V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A
 gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)]
          Length = 846

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 339/881 (38%), Positives = 520/881 (59%), Gaps = 88/881 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPH ++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 78  QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+  AH++ GL IA  N+D+V+  I+ + + E A+  LM +               
Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYE------------- 424

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL  L+GL R++++ EL  L   IK+  +IL ++ 
Sbjct: 425 -------------LSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II  +L  +  +    RRT+I  GL   +++E  I  E +V+T S  GY+KR+P+S
Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G  G+   ++D V  L + STH+ +LFF++ G VY+ +  ++P+GS  ++
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN++S+ + E++ +++      + +++ Y  F+TK G V+R K S+F +I  +GKI
Sbjct: 592 GIPAINLISIEKDEKLMSLLSI----NDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733
           A+KL   D +  V     + +I +    G  VRF    +R   GR + GV G+      D
Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI ++                                       SS EG++        
Sbjct: 707 EVIGLS---------------------------------------SSHEGSL-------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V EKG GK T   ++R++NR  KG+    V+   + G ++    VN N+++
Sbjct: 720 ------LLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++S  G ++RVP+ E+    R T GV + S  + E + SV
Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSV 812



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 59/106 (55%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T S KG+ KR     +++ +R G G++  +  + +++ +L+     +D   ++  
Sbjct: 513 ETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSD---LLFF 569

Query: 857 SDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
           ++ G + R+  +++ + SR +KG+    + S  KDE+++S+  I +
Sbjct: 570 TNYGKVYRIRAHQVPLGSRISKGIPAINLISIEKDEKLMSLLSIND 615


>gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
          Length = 831

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 332/737 (45%), Positives = 467/737 (63%), Gaps = 37/737 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V I  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G   ++ Y
Sbjct: 8   EHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSMYDSGYRPDRGY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VKC+R+ G+VMG YHPHG+++IYD L R+AQ WS+R  LI+GQGNFGS   DP AA RYT
Sbjct: 68  VKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSPGNDPAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L D+ +DTVDF  NYDG  QEP VL AR PN+LVNGGGGIAVGMATNIP
Sbjct: 128 ESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGGGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV DG V  ++NP+ D    L+AL+E I+GPDFPT  +I+G   I +AY TGRGS
Sbjct: 188 PHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGTNAIADAYRTGRGS 247

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R V  +E+ +  R  +VVTE+PYQVN   ++E IA + RE ++  I+D+ DES+ R+
Sbjct: 248 IKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGISDIADESNSRR 307

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI LKR +   V+LN LY++T LQ  F VNM+AL    P    L  +++ +V  + 
Sbjct: 308 GMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALVEGVPRTLRLDQVIRHYVKHQV 367

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRT++ L KA +RAH+L GL  A+  LDEV+ +IR SP  + AR            
Sbjct: 368 EVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDAR------------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              LI+L++             + EVQ  AILE++L RL  L R  I ++L  +  EI++
Sbjct: 416 -TGLIELLE-------------VDEVQANAILEMQLRRLAALERQKIVDQLAEIEREIED 461

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL    R   II+ EL+++ D+    RRTRIV    ++  ED I  ED+VVT++  G
Sbjct: 462 LKDILDKPERQRQIIRDELMAIVDKHGDDRRTRIVPHEGEVSMEDLIADEDVVVTLTRTG 521

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y KR    +YRAQ+RGGKG  G  ++ +D V+  F+ STH  +LFF++ G VY+ K + L
Sbjct: 522 YAKRTRTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYEL 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ + N+L+    E I  +M   +  ++    Y+V AT++G V++++L+DF 
Sbjct: 582 PEANRTARGQHVANLLAFQPDEHIAQVMQIKDYTAAP---YLVLATRNGLVKKSRLTDFD 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
                G I + L   DE++    C+ ++D+LL +  GQ +RF  S  A+R   GR + GV
Sbjct: 639 SNRSGGLIGVNLKDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEALRPM-GRATSGV 697

Query: 725 RGISLAKGDQVISMAIV 741
            G+   +GD++++M +V
Sbjct: 698 LGMRFNEGDELLAMGVV 714


>gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
 gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
          Length = 808

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 362/892 (40%), Positives = 529/892 (59%), Gaps = 93/892 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ MM  G+  N K+ K 
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+++IYDA+ R+ Q W++R  ++  QGNFGS+DGDPPAA RYTE R
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL DL K+T+  +PNYD + +EP VL A  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID P++ L  +ME ++GPDFPTG  I  + GI++AY TG  S+ +RG +
Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRI-SKQGIQDAYTTGHASLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE+ + +R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  R+VIE
Sbjct: 242 RIEEKN-NRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           LKRGA   ++LNQLY+YT LQS F+V N+  +NG +P    LI  ++ F+  R +VV RR
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVINLSIVNG-EPRVLPLIDTMRYFLDHRRDVVTRR 359

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA +RAH+L GL  A+ ++DEV+ +IR S     AR  LM R            
Sbjct: 360 TQYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMAR------------ 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++RL RL GL R+ + +E + L   I +   IL 
Sbjct: 408 --------------FELSEPQAQAILDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILG 453

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               L   IK+E+  ++D     RR+ I     D+  ED I  EDMV+T++  GY+KR  
Sbjct: 454 DEKLLWREIKKEIREIRDRYGDERRSTISALEEDISKEDLIAVEDMVITMTEAGYLKRTT 513

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YRAQ RGG+G  G  +R+ED  T +F+ STH  +LFF+  G ++ EK++ LP  +  
Sbjct: 514 LDAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARD 573

Query: 613 ARGKALINIL-SLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           A+G  + N+L SL   E I ++      E+E S+     VFATK+G V+R  ++D+  I 
Sbjct: 574 AKGSHIRNLLPSLRDDENIASVQSIRGFEEEGSF-----VFATKNGMVKRTLITDYGNIT 628

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE++SV      +DI+L T+ G+ +RF    +R   GR + GV GI L
Sbjct: 629 SAGLIAINLQEDDELISVGIVKNGSDIVLATRGGKAMRFAADEVR-DTGRATQGVIGIRL 687

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+SMA                        L+  DTE               SE  
Sbjct: 688 KGDDRVVSMA------------------------LVPADTE---------------SE-- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE G GKRT   D+    R G+G+   DV++  + G LV +  V+ 
Sbjct: 707 ----------LLAISEHGLGKRTPVSDYPSKGRGGQGVITLDVTE--KTGRLVTLARVDG 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +++++++  G +IR  V E+R+  R  +GV + + +  +RV+S   IR+ +
Sbjct: 755 GEELMVLTQGGLVIRTRVEEVRVTGRNAQGVKVINLSDKDRVISAFPIRKED 806


>gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
          Length = 888

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 350/898 (38%), Positives = 513/898 (57%), Gaps = 96/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M   G   ++ Y KCA
Sbjct: 19  VAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGYSKCA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNFGS   DPPAA RYTECR+
Sbjct: 79  RPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYTECRM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+
Sbjct: 139 MPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIPPHNM 198

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +G    +D+P+      L+AL+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 199 RELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 258

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 259 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRTGQRL 317

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 318 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIE 377

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L GL  A+  +DEV+R+IR S   E AR +LM+           
Sbjct: 378 RRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLME----------F 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L RL  + R  I +E   L  +I +  DI
Sbjct: 428 LD----------------IDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDI 471

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 472 LAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 532 TKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 591

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 592 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRTGKVKKTALAEYDSPRQ 648

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C   +DI+L +K G  ++F     ++   GR + 
Sbjct: 649 GGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA 708

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+     D++++M +V                                         
Sbjct: 709 GVQGMKFRGDDELLAMDVV----------------------------------------- 727

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               E+  Q+L       L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 728 ---PEDSKQDL-------LVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLV 775

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               V+++DQ++ +   G +IR  V E++   R T+GV +    K + ++S+ R  E+
Sbjct: 776 GALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 833


>gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4]
 gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4]
          Length = 840

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 367/919 (39%), Positives = 529/919 (57%), Gaps = 96/919 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D    L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+ RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E +    Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDA---PYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D+++S+ +V            Y+   +      SG   + 
Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVVREG--------TYLLVAT------SGGYSKR 735

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T ++ D  V+G                       G G  T  YD +         R T V
Sbjct: 736 TGME-DYPVQGR---------------------GGKGVLTIQYDKK---------RGTLV 764

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 GAL+    VND+D++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 765 ------GALI----VNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDNLL 814

Query: 893 SVERIRES--EIVDEAEST 909
           ++ R  +   E  D AES+
Sbjct: 815 AIARNADEPDETDDNAESS 833


>gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 910

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 349/898 (38%), Positives = 513/898 (57%), Gaps = 96/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M   G   ++ Y KCA
Sbjct: 41  VAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGYSKCA 100

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNFGS   DPPAA RYTECR+
Sbjct: 101 RPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYTECRM 160

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP HN+
Sbjct: 161 MPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIPPHNM 220

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +G    +D+P+      L+AL+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 221 RELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 280

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 281 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRTGQRL 339

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+ 
Sbjct: 340 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIE 399

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L GL  A+  +DE++R+IR S   E AR +LM+           
Sbjct: 400 RRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDARPKLME----------F 449

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L RL  + R  I +E   L  +I +  DI
Sbjct: 450 LD----------------IDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDI 493

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++KR
Sbjct: 494 LAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 553

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP GS
Sbjct: 554 TKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 613

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++    +
Sbjct: 614 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRTGKVKKTALAEYDSPRQ 670

Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722
            G IA++L       +  DE++    C   +DI+L +K G  ++F     ++   GR + 
Sbjct: 671 GGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA 730

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+     D++++M +V                                         
Sbjct: 731 GVQGMKFRGDDELLAMDVV----------------------------------------- 749

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               E+  Q+L       L V+ +GF KRT+  ++R+  R+G G++A  +++    G+LV
Sbjct: 750 ---PEDSKQDL-------LVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLV 797

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               V+++DQ++ +   G +IR  V E++   R T+GV +    K + ++S+ R  E+
Sbjct: 798 GALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 855


>gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
 gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
          Length = 836

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/908 (39%), Positives = 523/908 (57%), Gaps = 94/908 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N + D    L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGS+ +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRIV    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPNERIAQVIQI---KSYEDAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V++++L+DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSRLTDF-DSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D+++S+ +V                          DT  +
Sbjct: 691 LRPM-GRATSGVQGMRFNADDELLSLNVV------------------------RPDTYLL 725

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +     +   +I E   Q               G G  T  YD R              
Sbjct: 726 VATSGGYAKRTSIEEYTAQ------------GRGGKGILTIQYDRR-------------- 759

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + N +GAL+    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 760 -RGNLVGALI----VDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLI 814

Query: 893 SVERIRES 900
           ++ R  E+
Sbjct: 815 AIARNAEA 822



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 21/219 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-- 596
           +V  +  G VK+  L+ + + R GG     V +RD D +    + S+   +L  S+ G  
Sbjct: 624 LVLATRNGLVKKSRLTDFDSNRSGGI--VAVNLRDGDELVGAVLCSSEDDLLLVSAKGQS 681

Query: 597 --FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             F   ++  R     P  R  + +  +  N  + + ++     D       Y++ AT  
Sbjct: 682 IRFSATDEALR-----PMGRATSGVQGMRFNADDELLSLNVVRPD------TYLLVATSG 730

Query: 655 GNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++    R GK  + ++ D R   ++       + ++   T  G  +R    
Sbjct: 731 GYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVIRTAAR 790

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +R  AGR + GVR ++L +GD +I++A    A    DE
Sbjct: 791 QVRK-AGRQTKGVRLMNLGEGDTLIAIARNAEAGDSTDE 828


>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
 gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 872

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 351/906 (38%), Positives = 537/906 (59%), Gaps = 72/906 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++DG +A+I NP+++   LM II+GPDFPTG  ILGR+GIK  Y +G+GSI 
Sbjct: 194 IPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSGIKETYLSGKGSIT 253

Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IA++V +K++  IAD+RDESDR
Sbjct: 254 MRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R +   V+LN L++ T LQ+ FS NM+AL   +P   +L  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVILSLRKMLQVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + +RTKYLL KA  R H+L+GL +A+  LDE++ +IR + +  TA+ +L +      
Sbjct: 374 VETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQELHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+++Q+ AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKII 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL+ + R+  I K EL  +K++ +T RRT I++    +ED D I  E  VV ++  
Sbjct: 468 DLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ + A  RG +G++G   + E+ V      + H S+L FS  G  Y    +R
Sbjct: 528 GYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSD 664
           +P  S  A+G  ++ +L + + E IT+++      SS+++  Y++  T+ G ++R  LS 
Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLSV----SSFDDENYLLMLTRGGYIKRTPLSA 643

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
           F +I  +G IA+ L+  D +  V      + +L+ +K G  + F +  S +R   GR++ 
Sbjct: 644 FSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPL-GRSAR 702

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD ++SM ++    AD+ ++    +  S                       
Sbjct: 703 GVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELQSESSESEG---------------- 746

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           ++L  S  G GKR     FR+  R+G G+RA    K  +   LV
Sbjct: 747 ---------------PWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGD--ELV 789

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +   ++++LVS++G ++R   ++I   SRA  GV I      +++  V  +   +I
Sbjct: 790 GLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849

Query: 903 VDEAES 908
            D+ E+
Sbjct: 850 NDDDEN 855


>gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii]
          Length = 829

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     +DN + D    L A+ E ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IHDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDAP---YLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V++ KL+DF   NRSG I A+ L   DE++    C+ + D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D                    Y+  ++  R          
Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                    EG               ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  ++  ++
Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLL 814

Query: 893 SVERIRESEIVDEA 906
           ++ R  E+   DEA
Sbjct: 815 AIARNAEAN-ADEA 827


>gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1]
 gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1]
          Length = 812

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 357/892 (40%), Positives = 525/892 (58%), Gaps = 89/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDG+KPV RRI++ M+Q G+  N K+ K 
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM +YHPHG+++IYDA+ R+ Q W++R  L++ QGNFGS+DGD  AA RYTE R
Sbjct: 63  ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L DL K+TVD +PNYD +  EP VL +  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+IDNP I LD +M  ++GPDFPTG  I  + GI+ AYATG   + +RG +
Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE+    R QI+++EIPYQ+NK  +L+ I+ + +  +I DI  LRDESDR +  R+VIE
Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301

Query: 314 LKRGAS--ADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           LKR A+    ++LNQLY+YT LQS ++V N+  +NG +P    LI  ++ F+  R +VV 
Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNG-EPRVLPLIDTMRYFLDHRRDVVT 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA++RAHVL GL  A+ ++DEV+ +IR S     AR  LM R          
Sbjct: 361 RRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RL GL R+ ++ E + L   I     I
Sbjct: 411 ----------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKTITRLESI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L     L   IK+E+  ++D     RR+ I E   D+  ED I  EDMV+T++  GYVKR
Sbjct: 455 LGDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMTRAGYVKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L+ YR Q+RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP   
Sbjct: 515 TNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAG 574

Query: 611 PQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  + N+L  L   E I +++     +   +    +FATK G ++++ ++D+  I 
Sbjct: 575 RDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGS---FIFATKSGVIKKSLITDYANIT 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE++ V+     +D++L TK GQ +RF  + +R   GR + GV GI L
Sbjct: 632 SAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVR-DTGRATQGVIGIRL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+V+SMA+V   D                                            
Sbjct: 691 REGDEVVSMALVPGND-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +E  +L +SE G GKRT   D+    R G G+   DV+  ++ G LV +  V  
Sbjct: 707 ------EEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVT--DKTGKLVTLAHVAG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           N++++++++KGT+IR  V E+R+  R  +GV + +    +RV+    IR+ +
Sbjct: 759 NEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKED 810


>gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 882

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 366/909 (40%), Positives = 522/909 (57%), Gaps = 102/909 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M   G   ++ Y KC+
Sbjct: 23  VEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMYDGGYRPDRNYSKCS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+YHPHG++AIYDAL R+ Q W++R  LI+GQGNFGS   D  AA RYTEC++
Sbjct: 83  RVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDGQGNFGSAGNDGAAAPRYTECKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ +DTVDF+ NYDG  QEPV L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 APLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G   ++ +PD      L+AL+ II+GPDFP GA ILGR GI++AY TGRGSI  R
Sbjct: 203 REVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGATILGRKGIEDAYRTGRGSITQR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+  G R  +VVTE+PY VN   +  KIA  V++ ++  IADLRDES  R G R+
Sbjct: 263 AVVEVEEIQG-RTCLVVTELPYMVNPDTLANKIASYVKDGKVAGIADLRDESSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  FS NM+AL    P   ++   L+ +V  + +V+V
Sbjct: 322 VIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDNVPRTLSIDAFLRLWVKHQIDVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L G   A++ LDEV+ +IR SP+ + AR  LM+           
Sbjct: 382 RRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSPSSDEARTGLME----------- 430

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             + E+Q  AIL+L+L RL  L R  I  E   +   IK+  +I
Sbjct: 431 --LLD-------------VDEIQANAILDLQLRRLAALERLKIEEEAQKIEELIKDYNEI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L++ +R   I+ +EL +V       RRT+I+ G   D+  ED I  E++VVT++  GY K
Sbjct: 476 LATPARQREIVSEELDAVVQRYGDDRRTKILAGFDGDVSMEDLIPEEEVVVTITRGGYAK 535

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R   ++YRAQ RGGKG +G  +R +D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 536 RTQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEG 595

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+L   E I  ++  P+ +++    Y++ ATK G V++ +LS++    
Sbjct: 596 MRDAKGQHVANLLALQPDEEIAEVLSIPDYDAAQ---YLMLATKSGLVKKTRLSEYDSNR 652

Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
             G IA+ L        DE++S      E+ +LL ++ G  +RF    S IR   GR + 
Sbjct: 653 TGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRKGMSIRFAADDSTIRP-TGRATS 711

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   KG                                      E T L  D    
Sbjct: 712 GVTGMKF-KG--------------------------------------EDTLLTMDVVTP 732

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GAL 841
           G               ++  V+E GF KRT   ++R+  R G GI+   V+KI E  G L
Sbjct: 733 GT--------------YVFVVTEAGFAKRTPVEEYRLQGRGGFGIK---VAKITEQRGDL 775

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++ D + +V + G ++R  ++E+    R T GVV     K +R+++V R  E+E
Sbjct: 776 VGGLIVSEGDDVFVVMEMGKVVRSKIDEVPAKGRNTMGVVFAKPGKKDRIIAVTRGPEAE 835

Query: 902 -IVDEAEST 909
            I+DE + +
Sbjct: 836 DILDEVDES 844


>gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
 gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506]
 gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
          Length = 838

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/914 (38%), Positives = 520/914 (56%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY T RGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT+  ++ +  R GKG+    V
Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--V 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813

Query: 893 SVERIRESEIVDEA 906
           ++ R  E    D A
Sbjct: 814 AIARNAEESGDDNA 827


>gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029]
 gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
          Length = 834

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 344/899 (38%), Positives = 525/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+ +    K+ KCA
Sbjct: 8   IVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 68  KICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP HNL
Sbjct: 128 THSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++AY TGRG I +R   H
Sbjct: 188 GELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSAYTTGRGKIKVRARLH 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E+     RE I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G RVV+E+
Sbjct: 248 VEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+ RRT+
Sbjct: 308 KKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIRRRTR 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++               
Sbjct: 368 YELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE--------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AILELRL +LTGL  + I+ E   L  +I     +LS  
Sbjct: 413 -----------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +  II+ EL  +       RRT I  +     + ED I  E +++T+S   YVKR+P+
Sbjct: 462 GLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVKRMPV 521

Query: 554 SVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP G  +
Sbjct: 522 KVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERR 581

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F    + 
Sbjct: 582 AKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSNPRKK 638

Query: 672 GKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+++D  DE+++     + E  ++L T LG  VRFP   +R   GR + GVRG+SL 
Sbjct: 639 GIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVRGVSLK 697

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+S                                                    
Sbjct: 698 NEEDKVVS---------------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           CQ +  + Q +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++   PV D
Sbjct: 706 CQ-IVTENQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAIPVTD 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  DE  S
Sbjct: 763 HDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLS 821


>gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1]
 gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1]
          Length = 840

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 365/919 (39%), Positives = 526/919 (57%), Gaps = 96/919 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D    L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+ RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E +    Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDA---PYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D+++S+ +V            Y+   +      SG   + 
Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVVREG--------TYLLVAT------SGGYSKR 735

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T ++ D  V+G                       G G  T  YD +         R T  
Sbjct: 736 TGME-DYPVQGR---------------------GGKGVLTIQYDKK---------RGT-- 762

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                   LV    VND+D++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 763 --------LVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLL 814

Query: 893 SVERIRES--EIVDEAEST 909
           ++ R  +   E  D AES+
Sbjct: 815 AIARNADEPDEPDDNAESS 833


>gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A
 gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 842

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 329/749 (43%), Positives = 472/749 (63%), Gaps = 39/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     ++N + D     +A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + ++Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------AGLIELLD-------------IDDIQAQAILDMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KLSDF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSKLSDF-DSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+   + D+++S+ +V
Sbjct: 691 LRPM-GRATSGVQGMRFNEDDRLLSLNVV 718


>gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
 gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
          Length = 843

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 333/749 (44%), Positives = 470/749 (62%), Gaps = 39/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  +   I  V I  EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D    L A+ME I+GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +   + EV+VRRT+YLL KA++RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+          L+D                + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLME----------LLD----------------VDEIQADAILGMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E +    Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDAP---YLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+     D+++S+ +V
Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVV 718


>gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129]
 gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae]
          Length = 856

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 347/888 (39%), Positives = 525/888 (59%), Gaps = 93/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK A
Sbjct: 14  VHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRSYVKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQDW++R  +++GQGNFGS   D PAA RYTECRL
Sbjct: 74  RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSRGNDGPAAMRYTECRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG  QEP VL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 134 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    ++DNP+ D    L+A M+ ++GPDFPT   I+G  GI +AY TGRGSI +R
Sbjct: 194 RELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGSQGINDAYTTGRGSIRMR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R+ IV+TE+PYQVN   M+  IAE VR+ ++  I+ + DE SDR G R+
Sbjct: 254 GVTSIEE-EGNRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVGMRI 312

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + EV+V
Sbjct: 313 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRHYVTHQIEVIV 372

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR  LM+           
Sbjct: 373 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIARTGLME----------- 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL ++L RL  L R  I +EL  + +EI +  DI
Sbjct: 422 ---------------LLTVDEIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDI 466

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  + D+    RRT+I+    D+ +ED I RE++VVT++  GY KR
Sbjct: 467 LARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIARENVVVTITSTGYAKR 526

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 527 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEAS 586

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G V++++LSD+ + NR
Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATAQGRVKKSRLSDY-ESNR 642

Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
           SG  IA+ L+  D+++    C  ++D+LL ++ GQ +RF  +  ++   GR + GV+G+ 
Sbjct: 643 SGGLIAINLNEGDKLIGAALCDNDDDLLLVSEEGQSIRFNANDDQLRPMGRATAGVKGMR 702

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               DQ+++M +V                                  K D+         
Sbjct: 703 FKGDDQLLAMTVV----------------------------------KPDA--------- 719

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F+L  +  G+GKRTS  ++    R G+G+     +   + G L+A   V+
Sbjct: 720 ----------FLLVATSGGYGKRTSLDEYSPQGRGGQGVLTFKYTP--KRGKLIAAVVVD 767

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+ ++  G +IR  VN+IR +SRAT GV + +      +++++R
Sbjct: 768 EDDEILAITSAGGVIRTVVNQIRPSSRATMGVRLVNLEDGVELLAIDR 815


>gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614]
 gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614]
          Length = 922

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 356/899 (39%), Positives = 518/899 (57%), Gaps = 63/899 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   MQ +Y+ YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KC+
Sbjct: 23  IEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+YHPHG+ AIYD L R+AQ W +R  LI GQGNFGS   D  AA RYTECR+
Sbjct: 83  RVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHGQGNFGSPGNDSAAAMRYTECRM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+PNYDG  QEPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 APLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +++PD       DAL+E I+GPDFP GA+I+GR GI+ AY TGRGSI  R
Sbjct: 203 REVAEGARWALEHPDATREELQDALIERIKGPDFPNGALIVGRQGIEQAYRTGRGSITQR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +++ +  R  +V+TE+PY VN   +  KIAEL    ++  I+D+RD+ SDR G R+
Sbjct: 263 AVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELADSGKVQGISDVRDDTSDRTGQRL 322

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L ++T LQ+ FS NM+AL    P    +   +  +V  + +V+ 
Sbjct: 323 VVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLAIDQFISNWVTHQIDVIR 382

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A  RAHVL GL  A+  LDEV+ +IR SP+   AR             + L
Sbjct: 383 RRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSPDVAEAR-------------EGL 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I L+D             + EVQ  AIL+++L +L  L R  I ++L  +   I +  DI
Sbjct: 430 IALLD-------------IDEVQATAILDMQLRQLAALQRQKIIDDLAEIEARIADLKDI 476

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++ +R   I+  EL  + +     RR++I+    D+  ED I  E++VV+++  GY KR
Sbjct: 477 LANVARQRQIVADELAEIVERYGDDRRSQIIAADGDLSMEDLIPDEELVVSITRGGYAKR 536

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR QRRGGKG  G  +R +D V      + H  +LFF++ G VY+ K + LP  S
Sbjct: 537 TRADQYRTQRRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRTKAYNLPEAS 596

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +  +LS    E I  ++   + + +    Y+V AT+ G V++ +L D+    +
Sbjct: 597 RDAKGGHVAGLLSFQPDENIAQVLAIRDYDQA---PYLVLATRDGLVKKTRLGDYNSPRQ 653

Query: 671 SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
           +G IA+   S  DE++  E    E+ ILL ++ GQ VRF    S +R   GR + GV G+
Sbjct: 654 AGVIAINFRSEDDELIGAELVNPEDHILLVSRKGQSVRFQADDSQLRPM-GRATGGVTGM 712

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               GD ++SM++           I   +  + +    SG++ E             ++E
Sbjct: 713 KFRDGDSLLSMSV-----------IRAAQVEAEEAAEASGESVE------------EMAE 749

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            R Q   L  Q++ T+++ GF KRT   ++R+ +R G GIRA  ++   + G LV  F V
Sbjct: 750 TRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAMKLAN-EDRGELVGAFIV 808

Query: 848 NDNDQIILVSDKGTLIRVPVNE-IRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            D D+I+ ++  G ++R P++E  R   R+T GV   +  K + V  V R  E+   DE
Sbjct: 809 EDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVTPKKGDSVAVVARSVEANGDDE 867


>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 364/925 (39%), Positives = 534/925 (57%), Gaps = 101/925 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++S DE     I    +  E   SY+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G
Sbjct: 93  VVSGDESR---IVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 149

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DP
Sbjct: 150 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 209

Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIA
Sbjct: 210 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 269

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY T
Sbjct: 270 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 329

Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GRG +V+RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RD
Sbjct: 330 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 389

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF
Sbjct: 390 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 449

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR  VV RR ++ L+ A+ R H + G+ + + N+DEV+++I+ + +  +A   L    
Sbjct: 450 IDFRCSVVERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQ--- 506

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                          S Y         LSE Q  AILE+ L RLT L R  + +E +SL 
Sbjct: 507 ---------------SEYG--------LSEKQAEAILEITLRRLTTLERKKVTDESSSLT 543

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540
            +I +   +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++
Sbjct: 544 EQITKLEQLLSTRANILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 603

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  GYVK++    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY 
Sbjct: 604 AISEKGYVKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 663

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
            + +++P  S  A G  L+ ILS+++GER+T+I+P   F ED       Y++  T +G +
Sbjct: 664 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 717

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  F  I  +G IA++L+S DE+  V  C+ ++ + + ++ G  V      +R  +
Sbjct: 718 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLS 777

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RN+ GV  + L   D++ SM I+                                SL+ 
Sbjct: 778 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 806

Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           D        EE+ ++  + +Q    ++L V E G+GKR     FR S  +  G+      
Sbjct: 807 D-------MEEKSEDASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGY--- 856

Query: 834 KINEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           K  E   L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++   
Sbjct: 857 KFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILM-- 914

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
               R+    +I+ + ++  A+  E
Sbjct: 915 ----RLDHAGKIQSASLISAADEEE 935


>gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 870

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 362/907 (39%), Positives = 523/907 (57%), Gaps = 100/907 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 21  IEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 81  RVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 141 APLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + NP+      LDAL++ I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 201 REVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+PYQVN   + +KIA+LV++ RI  IAD+RDE S R G R+
Sbjct: 261 AVVEVEEIQG-RQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQRL 319

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 320 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRNWVTHQIEVIV 379

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   +TAR  LM+           
Sbjct: 380 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGLME----------- 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AILE++L RL  L R  I  E + L  +I E   I
Sbjct: 429 ---------------LLEIDEIQANAILEMQLRRLAALERQKITQEHDELQAKINEYNAI 473

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   II +EL ++ ++    RR+++V    DM  ED I  ED+VVT++  GY+KR
Sbjct: 474 LASPERQRQIISEELTALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTITRGGYLKR 533

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 534 TKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 593

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +ARG+ + N+L+    E+I  I+   + ++     Y+V ATK G V++  L D+     
Sbjct: 594 REARGQHVANLLAFQPDEQIARILAIRDYDAVP---YLVLATKSGLVKKTPLKDYDSPRS 650

Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L    D R DE++  E  + ++D+LL +K  Q +RF  +  ++R   GR + G
Sbjct: 651 GGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPM-GRATSG 709

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+S  + D+++SM +V                           T   T+     +   
Sbjct: 710 VKGMSFREDDELLSMNVVRPG------------------------TFVFTATDGGYAKRS 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N+ E R Q                              R G GI+A  +  + + G+LV 
Sbjct: 746 NVDEYRVQ-----------------------------GRGGLGIKAAKI--VEDRGSLVG 774

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V ++D+I+ ++  G +IR  V+E+R   R T GV + +  K + VV +   R +E  
Sbjct: 775 ALVVEESDEILAITLGGGVIRTRVSEVRETGRDTMGVQLINLGKRDAVVGI--ARNAEAG 832

Query: 904 DEAESTE 910
            EAE  E
Sbjct: 833 REAEEVE 839


>gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
          Length = 836

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 350/900 (38%), Positives = 519/900 (57%), Gaps = 93/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT + +T+EM+NSY+ YA++VI+GRA+P++RDG+KPVHRR+++ M   G   ++ YVK A
Sbjct: 16  ITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYAMYDNGFRHDRGYVKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   E MG YHPHG+ AIYD L RMAQ WS+R  L++GQGNFGS   D PAA RYTECRL
Sbjct: 76  RPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TV+F PNYDG  QEP VL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 136 TPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGSSGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    +++NP+ D    L+A M+ ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 196 NELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 255

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           G S IE+  G R+ I++TE+PY VN   ++  IAE VR+ +I  IA + DE SDR G R+
Sbjct: 256 GKSTIEE-EGSRQIIIITELPYMVNPDNLVSSIAEQVRDGKIAGIAKIDDESSDRVGMRI 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + EV+V
Sbjct: 315 VVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDSVPRTLRLDQMLRLYVKHQIEVIV 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL  A+  LDEV+ +IR S   + AR  L          KDL
Sbjct: 375 RRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDIAREGL----------KDL 424

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D IDD               +Q  AIL ++L RL  L R  I +EL  +   I +   I
Sbjct: 425 LD-IDD---------------IQADAILAMQLRRLAALERQKIIDELAEIEETIADLKAI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL  + ++    RRT IV    D+ +ED I RE++VVT++  GY KR
Sbjct: 469 LASPERQRAIVRDELTEIVEKFGDERRTEIVGATGDVSEEDLIARENVVVTITSTGYAKR 528

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR+QRRGGKG  G  ++ +D V   F+ STH  ++F ++ G VY+ K + LP  S
Sbjct: 529 TKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNYGRVYRLKAYELPEAS 588

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L    GE+I  I+     +S  +  Y+V AT+ G V++++L+D+     
Sbjct: 589 RTARGQHVANLLEFQPGEQIAEIIQI---QSFEDAPYLVLATQQGRVKKSRLTDYDTARS 645

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G IA+ L+  D+++  + CT ++D+LL ++ GQ +RF      +R   GR + GV+G+ 
Sbjct: 646 GGLIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTLRPM-GRATAGVKGMR 704

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               DQ++++ +V H D+      C                                   
Sbjct: 705 FRGEDQLLALTVV-HDDS------C----------------------------------- 722

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L  +  G+GKRT   ++ +  R   G+         + G L+    V 
Sbjct: 723 -----------LLVATSGGYGKRTPMEEYPVKGRGTMGVVTFKYDP--KRGKLIGAVTVT 769

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++D+I  V+  G +IR  V +IR  SRAT GV +   AK   +++++R  E E  + A+ 
Sbjct: 770 EDDEIFAVTSAGGIIRTEVGQIRKTSRATMGVRLVDLAKGVELLAIDRNVEDEGEESAQQ 829


>gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99]
 gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99]
          Length = 839

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 355/921 (38%), Positives = 522/921 (56%), Gaps = 97/921 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ ++    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   +  + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D D    L A+ + ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V +RRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+              + E+Q +AIL+++L RL  L R+ I +
Sbjct: 420 ------------AGLIELLG-------------IDEIQAQAILDMQLRRLAALERERIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATQNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ E D+LL +  GQ +RF  +  A
Sbjct: 632 VVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+                   + D+R+  +                 
Sbjct: 691 LRPM-GRATSGVQGMRF-----------------NADDRLLSL----------------- 715

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N+  E          ++L  +  G+ KRT   ++ +  R GKG+     
Sbjct: 716 -----------NVVREGT--------YLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMY 756

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            +    G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 757 DRRR--GRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 814

Query: 893 SVERIRES---EIVDEAESTE 910
           ++ R  E    E V EA  T+
Sbjct: 815 AIARNAEENADEAVAEATDTD 835


>gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 882

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 358/904 (39%), Positives = 521/904 (57%), Gaps = 95/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KCA
Sbjct: 35  IEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKCA 94

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 95  RVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKM 154

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 155 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNL 214

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + NP    D  L+ALM  I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 215 REVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRGSITMR 274

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIAEL+++ ++  IADLRDE S R G R+
Sbjct: 275 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQRL 333

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR AS  V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  + +V+V
Sbjct: 334 VIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQMDVIV 393

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM+           
Sbjct: 394 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME----------- 442

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E Q +AIL ++L RL  L R  I++  + L   I E   I
Sbjct: 443 ---------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAI 487

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549
           ++S +R   II +EL  + +     RRT+I+ G   DM  ED I  E++VVT++  GY+K
Sbjct: 488 IASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITRGGYIK 547

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K + L   
Sbjct: 548 RTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEA 607

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L    GE I  +M     E +    Y+V AT+ G V++++LSD+    
Sbjct: 608 GRDAKGQHIANLLEFQGGEHIAQVMELKSYEDAE---YLVLATRGGMVKKSRLSDYDTNR 664

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S  T + ++DILL ++ G  +RF    +++R   GR++ GV G+
Sbjct: 665 TAGLIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPM-GRSTSGVTGM 723

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD++IS  +V                                        EG+   
Sbjct: 724 KFREGDELISANVV---------------------------------------TEGS--- 741

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+  V+E G+ KRTS  ++R+  R+G GI+   +  + + GALV    V
Sbjct: 742 -----------FVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKL--VEDRGALVGGLIV 788

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EA 906
           ++ D++++V   G ++R  VNE+    R T GV+     K + ++ V R ++ ++ D + 
Sbjct: 789 DEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDD 848

Query: 907 ESTE 910
           E+TE
Sbjct: 849 ETTE 852


>gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 834

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 344/899 (38%), Positives = 524/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+ KCA
Sbjct: 8   IVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKHRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 68  KICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP HNL
Sbjct: 128 THSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++ Y TGRG I +R   H
Sbjct: 188 GELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKVRARLH 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E+     RE I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G RVV+E+
Sbjct: 248 VEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+ RRT+
Sbjct: 308 KKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIRRRTR 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++               
Sbjct: 368 YELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE--------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AILELRL +LTGL  + I+ E   L  +I     +LS  
Sbjct: 413 -----------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +  II+ EL  +       RRT I  +     + ED I  E +++T+S   YVKR+P+
Sbjct: 462 GLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVKRMPV 521

Query: 554 SVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP G  +
Sbjct: 522 KVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERR 581

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F    + 
Sbjct: 582 AKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSNPRKK 638

Query: 672 GKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+++D  DE+++     + E  ++L T LG  VRFP   +R   GR + GVRG+SL 
Sbjct: 639 GIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVRGVSLK 697

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+S                                                    
Sbjct: 698 NEEDKVVS---------------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           CQ +  + Q +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++   PV D
Sbjct: 706 CQ-IVTENQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAIPVTD 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  DE  S
Sbjct: 763 HDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLS 821


>gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 868

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 341/897 (38%), Positives = 513/897 (57%), Gaps = 91/897 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DEMQ SY+ YA++VI+GRA+PD+RDG+KPVHRR+++ M   G    + YVK A
Sbjct: 14  IQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDSGYRPERSYVKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  GE M   HPHG++AIYD L RMAQ WS+R  LI+GQGNFGS   D PAA RYTEC++
Sbjct: 74  KPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGSPGNDGPAAMRYTECKM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TV+F PNYDG  +EP +L +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 134 TPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGSGGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    ++DN   D    LDA+ME ++GPDFPT  +I+G TGIK+AY TGRGSI +R
Sbjct: 194 RELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIVGDTGIKDAYTTGRGSIRMR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G R+ IV+TE+PYQVN    +  IA+ +   ++   + + DE SDR G R+
Sbjct: 254 GVTEIEEI-GSRQVIVITELPYQVNPDNFIANIADHIANGKLPGASRIDDESSDRVGMRI 312

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ L++ FS NM+++    P    L  +L+ +V  + EV+V
Sbjct: 313 VVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVDGVPRTLRLDQMLRYYVKHQIEVIV 372

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR               L
Sbjct: 373 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAR-------------TGL 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I+L+D             + E+Q   IL ++L RL  L R  I ++L  +  +I +  DI
Sbjct: 420 IELLD-------------VDEIQANEILSMQLRRLAALERQKIVDDLAEIERQIADLKDI 466

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  + +     RRTR++    D+ +ED I RE++VVT++  GY KR
Sbjct: 467 LASPERQRAIVGDELAEIVERYGDDRRTRLIAATGDVSEEDLIARENVVVTITSTGYAKR 526

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQ+RGGKG  G  ++ +D V + FI STH  +LFF++ G VY+ K + LP   
Sbjct: 527 TKVDAYKAQKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAG 586

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++      S  +  Y+V AT+ G V++++L+D+     
Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQI---HSYEDAPYLVLATREGRVKKSRLTDYESARS 643

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D+++     + E+D+LL ++ GQ +RF     ++   GR + GV+G+  
Sbjct: 644 AGLIAINLNEGDQLIGAALASDEDDVLLVSEQGQAIRFTADDEQLRPMGRATAGVKGMRF 703

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ+++M +V   D                                            
Sbjct: 704 RGDDQLLAMTVVHDND-------------------------------------------- 719

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    F+L  +  G+GKRT+  ++    R G G+     +   + G L+    V +
Sbjct: 720 ---------FLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYTP--KRGKLIGALAVEE 768

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            DQI  ++  G +IR  V +IR +SRAT GV +    +D  ++++++  E E  +EA
Sbjct: 769 EDQIFAITSAGGVIRTEVAQIRPSSRATMGVRLVDLGEDVELLAIDKNVEDEGEEEA 825


>gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4]
 gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4]
          Length = 842

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 356/916 (38%), Positives = 527/916 (57%), Gaps = 88/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG++AIYD L R+AQ W++R  +++GQGNFGS 
Sbjct: 61  WDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTEC++   A  ++ D+ K+TVDF+PNYDG   EPVVL +R PN+LVNG  
Sbjct: 121 GNDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT +P HNL EV +     +DNPD      L A ME I+GPDFPT   I+G  G
Sbjct: 181 GIAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIVGDQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY+TGRGSI +RG + IE+  G+R  IV+TE+PY+VN   M+  IAE +R+ +I  I
Sbjct: 241 IKDAYSTGRGSIRMRGKTSIEE-EGNRTVIVITELPYEVNPDNMILSIAEQLRDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLALN 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+VRRT+YLL++A  RAH+L GL  A+  LDEV+ +IR S   E AR 
Sbjct: 360 HLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIARE 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L          KDL+++ DD                Q +AIL+++L RL  L R  I +
Sbjct: 420 GL----------KDLLEIDDD----------------QAQAILDMQLRRLAALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L ++ +EI +  DIL+   R   I+  EL  + ++    RRTRI+    D+ DED I R
Sbjct: 454 QLAAIELEIADYKDILAKPERQRAIVGDELREIVEKYGDDRRTRIIPADGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTRTDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 574 GRVYRIKAYELPEANRTARGQHVANLLAFQPEERIAGVIRI---KSYQDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AI 713
            V++++L D+      G IA+ L   DE++       ++D+LL ++ GQ +RF  +   +
Sbjct: 631 LVKKSRLEDYDSPRSGGLIAVNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+    GD ++SM++V                     R  + D E+  
Sbjct: 691 RPM-GRATSGVMGMRFNDGDALLSMSVV---------------------RADTSDQEKY- 727

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +E+G+ KRT+  ++    R GKG+      
Sbjct: 728 -------------------------FLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFD 762

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV    V   D++  ++  G +IR    ++R A R TKGV + + A+ + +++
Sbjct: 763 P--KRGKLVGATIVELQDELYAITSSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLA 820

Query: 894 VER-IRESEIVDEAES 908
           + R   E +  D+AE+
Sbjct: 821 IARNADEPDDEDKAEA 836


>gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
          Length = 874

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 366/923 (39%), Positives = 528/923 (57%), Gaps = 105/923 (11%)

Query: 6   ISSDEEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++SDE  E     +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M  
Sbjct: 13  LTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYD 72

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   
Sbjct: 73  GGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGN 132

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DP AA RYTEC++   A  +L D+ ++TVDF+ NYDG  QEP VL AR PN+LVNG  GI
Sbjct: 133 DPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGI 192

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HNL EV +G    + NP       L+AL++ I+GPDFPTGA+++GR GI+
Sbjct: 193 AVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFPTGALVVGRKGIE 252

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSI +R V  +E+  G R+ +VVTE+PYQVN   + +KIA+LV++ ++  IAD
Sbjct: 253 EAYRTGRGSITMRAVVEVEEIQG-RQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIAD 311

Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   
Sbjct: 312 VRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAF 371

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   +TAR  L
Sbjct: 372 IRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGL 431

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M                          G + + E+Q  AILE++L RL  L R  I  E 
Sbjct: 432 M--------------------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEH 465

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           + L  +I E   IL+S  R   II +EL ++ ++    RR+++V    DM  ED I  ED
Sbjct: 466 DELQSKIDEYNAILASPERQRQIISEELTAIVEKFGDDRRSKLVPFDGDMSIEDLIAEED 525

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT++  GYVKR     YR+Q+RGGKG  G  ++ +D V+  F+ +TH  +LFF++ G 
Sbjct: 526 IVVTITRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTTHHWLLFFTNKGR 585

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K + LP    +ARG+ + N+L+    E+I  I+   + E+     Y+V ATK G V
Sbjct: 586 VYRAKAYELPDAGREARGQHVANLLAFQPDEKIARILAIRDYEAVP---YLVLATKSGLV 642

Query: 658 RRNKLSDFIQINRSGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPIS- 711
           ++  L D+      G IA+ L    D R DE++  E  +  +D+LL ++  Q +RF  + 
Sbjct: 643 KKTPLKDYDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLISRKAQSIRFTATD 702

Query: 712 -AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++R   GR + GV+G+S  + D+++SM +V                           T 
Sbjct: 703 ESLRPM-GRATSGVKGMSFREDDELLSMNVVRPG------------------------TF 737

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
             T+     +   N+ E R Q                              R G GI+A 
Sbjct: 738 VFTATDGGYAKRTNVDEYRVQ-----------------------------GRGGLGIKAA 768

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            +  + + G+LV    V + D+I+ ++  G +IR  VNE+R   R T GV + +  K + 
Sbjct: 769 KI--VEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKRDA 826

Query: 891 VVSVERI----RESEIVDEAEST 909
           VV + R     RE+E V+E  +T
Sbjct: 827 VVGIARNAEAGREAEEVEEDSAT 849


>gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1]
 gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1]
 gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1]
 gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1]
 gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1]
 gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1]
 gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1]
 gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1]
 gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
 gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2]
 gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1]
 gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 891

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/907 (39%), Positives = 517/907 (57%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S+++  Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S    + V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
 gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
          Length = 843

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 332/749 (44%), Positives = 470/749 (62%), Gaps = 39/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  +   I  V I  EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D    L A+ME I+GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +   + EV+VRRT+YLL KA++RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+          L+D                + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLME----------LLD----------------VDEIQADAILGMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E +    Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDAP---YLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+     D+++S+ +V
Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVV 718


>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
 gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 875

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 349/877 (39%), Positives = 521/877 (59%), Gaps = 67/877 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVD+  N+DGS QEP+VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++DG  A+I NP++    LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLLTLRKMLQVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  TAR++L +      
Sbjct: 374 VDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LTEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL  R R+ G+I+ EL  ++++   PRRT I++    +ED D I  E  VV ++  
Sbjct: 468 NYKDILGRRERVFGLIEDELTKLREKHCLPRRTEILDLGGGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  ++ +L + + E IT+++      S  ++ +++  TK G ++R  LS F
Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITSLLSV---ISFDDDTHLLMLTKGGFIKRTSLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V      + +L+ ++ G  + F +    +R   GR + G
Sbjct: 645 SKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR ++L  GD ++SM ++    AD                      +   SL++D    G
Sbjct: 704 VRAMNLRGGDSLVSMDVLPVELAD----------------------QVAKSLEDDQDESG 741

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +     ++L  S  G GKR     FR+  R+G G+RA    +  E   LV 
Sbjct: 742 ETV------VVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRR--EGDELVG 793

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  +   ++++LVS++G ++R   ++I   SRA  GV
Sbjct: 794 LRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGV 830



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 519 RIVEGLLDMEDE--DCIVRED--MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           ++ + L D +DE  + +V  D   V+  S  G  KRVP++ +R Q+R G G   +  R E
Sbjct: 728 QVAKSLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRRE 787

Query: 575 -DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +  L ++     +L  S  G + +    ++P    Q+R    + +  L+ G+R++ +
Sbjct: 788 GDELVGLRVLGYGEELLLVSERGVIVRTSADKIP---QQSRAATGVRLQRLDAGDRLSEV 844

Query: 634 MPFPEDESSWNN 645
           +  P D    + 
Sbjct: 845 VLVPPDSEDQDQ 856



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+ ++ ++E G+ KR    +F  ++R  +G +A   S+  E  A+      ND+D
Sbjct: 513 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
            ++L SD+G    +P   +   SR  KG   V +    ++E + S+
Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSL 615


>gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233]
 gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233]
          Length = 831

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 355/885 (40%), Positives = 507/885 (57%), Gaps = 92/885 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+GM   G   ++  VK +R+ 
Sbjct: 15  VDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSGFRPDRSTVKSSRVV 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG++ IYD + RMAQ WSLR  +I+GQGNFGS+  DPPAA RYTECRL + 
Sbjct: 75  GDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDPPAAMRYTECRLTQL 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +LD +G+ TVD  PNYD    EP VL AR PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 135 AMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNLREV 194

Query: 199 VDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
               V  ++NP+      L+A ME I+GPDFPTGA+I+G+ GI +AY TGRGSI +R V 
Sbjct: 195 ASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIVGKDGIADAYRTGRGSIRMRAVV 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIE 313
           +IE+ +  R  +VVTE+PYQVN   ++E IA L ++ +I  IAD+ DE SDR G R+VI 
Sbjct: 255 NIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADIADESSDRIGMRLVIT 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A A V+L  L+++T+LQ+ F  NM+A+    P    L  ++  +VA + EV+VRRT
Sbjct: 315 LKRDAVAKVVLANLFKHTALQTSFGANMLAIVDGVPRTLRLDQMISLYVAHQVEVIVRRT 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L+KA +RAH+L GL  A+  LDEV+ +IR SP+ E ++  LM+          L+D 
Sbjct: 375 QYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGLME----------LLD- 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          + E+Q  AIL+++L RL  L R  I +EL  L   I +  DIL+ 
Sbjct: 424 ---------------VDEIQATAILDMQLRRLAALERQRIIDELAELERVIADLKDILAK 468

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R   II+ EL    D+    RRTR+V    D+  ED I  ED+VVT++  GY KR   
Sbjct: 469 PERQRAIIRDELTEAVDKHGDDRRTRLVPYDGDVSVEDLIAVEDVVVTITRTGYAKRTKT 528

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
            +YRAQRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +  A
Sbjct: 529 DLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAKAYELPEANRNA 588

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + N+L+    ERI  ++  P  +++    Y+V ATK G V++++L+ F      G 
Sbjct: 589 RGQHVANLLAFQPDERIAEVIQIPHYQAAP---YLVLATKGGLVKKSELAAFDSNRAGGI 645

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAK 731
           +A+ L   DE++    C    D+LL +  GQ +RF  +   +R   GR + GV G+    
Sbjct: 646 VAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPM-GRATSGVLGMRFNA 704

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+++SM++V                                              E  Q
Sbjct: 705 GDELLSMSVVY---------------------------------------------EGAQ 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            L   E        +G+ KRT   ++ +  R GKG+      +    G LV    V+ + 
Sbjct: 720 VLVATE--------RGYAKRTDIDEYPVQGRGGKGVLTIQYDR--RRGKLVGALIVDLDT 769

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++  ++    +IR    E+R A R T GV + + ++ + +V++ R
Sbjct: 770 EVYAITSGAGVIRTQAREVRKAKRQTMGVRLMNLSEGDSLVAIAR 814



 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +G++S    ++L   E  ++T++  G+ KRT +  +R   R GKG++   + + + +   
Sbjct: 499 DGDVS---VEDLIAVEDVVVTITRTGYAKRTKTDLYRAQRRGGKGVQGAALKQDDIVAHF 555

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
              F  + +D I+  ++KG + R    E+  A+R  +G     + +   DER+  V +I
Sbjct: 556 ---FVCSTHDWILFFTNKGRVYRAKAYELPEANRNARGQHVANLLAFQPDERIAEVIQI 611


>gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
 gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
          Length = 879

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 347/912 (38%), Positives = 519/912 (56%), Gaps = 93/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +S D  +   I  + I +EMQ SY+ YA++VI+GRA+PD+RDG+KPVHRRI++ M
Sbjct: 1   MSDDTLSGDTYDR--IFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W +R  L++GQGNFGS 
Sbjct: 59  YDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC++   A  ++ D+ ++ VDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +    ++DN D D    LDA ME ++GPDFPT  +I+G +G
Sbjct: 179 GIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIVGDSG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+  G R+ IV+TE+PY VN    +  IAE V   ++  I
Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEV-GTRQVIVITELPYNVNPDNFISGIAEQVAAGKMTGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ L++ FS NM++L    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM           L+D                + EVQ  AIL ++L RL  L R  I +
Sbjct: 418 GLMS----------LLD----------------VDEVQADAILAMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L ++  EI +  DIL+   R   I+  EL  V D+    RRT++V    D+ +ED I R
Sbjct: 452 DLAAIEAEIADYKDILAKPERQRAIVADELREVVDKHGDERRTKLVAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     ++  +  Y+V AT+ G
Sbjct: 572 GRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVIQI---QTYQDAPYLVLATRDG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++       ++DILL ++ GQ +RF     ++
Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDDDILLVSEQGQSIRFTADDEQL 688

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M  V  +D  Y                          
Sbjct: 689 RPMGRATAGVKGMRFRGDDQLLAMTTV--SDGQY-------------------------- 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +  G+GKRT   ++    R G G+     + 
Sbjct: 721 -------------------------LLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTP 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V ++DQI  ++  G +IR  VN+IR +SRAT GV +     D  ++++
Sbjct: 756 --KRGKLIGALAVEEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLGDDVELLAI 813

Query: 895 ERIRESEIVDEA 906
           +   E E   EA
Sbjct: 814 DVNVEDEGEQEA 825


>gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
          Length = 876

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 357/904 (39%), Positives = 520/904 (57%), Gaps = 95/904 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KCA
Sbjct: 29  IEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKCA 88

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 89  RVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 149 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNL 208

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + NP       L+ALM  I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 209 REVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRGSITMR 268

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIAEL+++ ++  IADLRDE S R G R+
Sbjct: 269 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQRL 327

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR AS  V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  + +V+V
Sbjct: 328 VIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQMDVIV 387

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM+           
Sbjct: 388 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME----------- 436

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E Q +AIL ++L RL  L R  I++  + L   I E   I
Sbjct: 437 ---------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAI 481

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549
           ++S +R   II +EL  + +     RRT+I+ G   DM  ED I  E++VVT++  GY+K
Sbjct: 482 IASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITRGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K + L   
Sbjct: 542 RTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEA 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L    GE I  +M     E +    Y+V AT+ G V++++LSD+    
Sbjct: 602 GRDAKGQHIANLLEFQGGEHIAQVMELKSYEDAE---YLVLATRGGMVKKSRLSDYDTNR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S  T + ++DILL ++ G  +RF    +++R   GR++ GV G+
Sbjct: 659 TAGLIAINLREGDEVVSAFTVSDKDDILLVSRNGMSLRFHADDASLRPM-GRSTSGVTGM 717

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD++IS  +V                                        EG+   
Sbjct: 718 KFREGDELISANVV---------------------------------------TEGS--- 735

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+  V+E G+ KRTS  ++R+  R+G GI+   +  + + GALV    V
Sbjct: 736 -----------FVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKL--VEDRGALVGGLIV 782

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EA 906
           ++ D++++V   G ++R  VNE+    R T GV+     K + ++ V R ++ ++ D + 
Sbjct: 783 DEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDD 842

Query: 907 ESTE 910
           E+TE
Sbjct: 843 ETTE 846


>gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39]
 gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183]
 gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A
 gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae]
 gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 834

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 343/899 (38%), Positives = 524/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+ +    K+ KCA
Sbjct: 8   IVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 68  KICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP HNL
Sbjct: 128 THSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++ Y TGRG I +R   H
Sbjct: 188 GELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKVRARLH 247

Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E+     RE I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G RVV+E+
Sbjct: 248 VEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+ RRT+
Sbjct: 308 KKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIRRRTR 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++               
Sbjct: 368 YELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE--------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AILELRL +LTGL  + I+ E   L  +I     +LS  
Sbjct: 413 -----------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +  II+ EL  +       RRT I  +     + ED I  E +++T+S   YVKR+P+
Sbjct: 462 GLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVKRMPV 521

Query: 554 SVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP G  +
Sbjct: 522 KVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERR 581

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F    + 
Sbjct: 582 AKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSNPRKK 638

Query: 672 GKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+++D  DE+++     + E  ++L T LG  VRFP   +R   GR + GVRG+SL 
Sbjct: 639 GIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVRGVSLK 697

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+S                                                    
Sbjct: 698 NEEDKVVS---------------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           CQ +  + Q +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++   PV D
Sbjct: 706 CQ-IVTENQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAIPVTD 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  DE  S
Sbjct: 763 HDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLS 821


>gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 843

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 363/896 (40%), Positives = 515/896 (57%), Gaps = 90/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRR+L  M +     ++ YVK A
Sbjct: 35  VIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSA 94

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEV+G YHPHG++A+Y+ + RMAQ +S+R  LI+GQGNFGSVDGD  AA RYTE RL
Sbjct: 95  KIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEARL 154

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ K+TV F PN+D + Q+P VL A +PN+LVNG  GIAVGMATNIP HNL
Sbjct: 155 TKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNL 214

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E V+  +A+I NPDI L  LM+I+ GPDFPTG  I+G  G+  AYATG+GSI IR    
Sbjct: 215 KEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKVD 274

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I + +  RE IV+ EIPYQVNK  MLEKI +LV EK I  I+++ D SDR+G RV I +K
Sbjct: 275 IIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHVK 334

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A VILNQL++ T LQ  + + M+A+   +P+ F+L  ILK++   R EVVV+RT++
Sbjct: 335 KDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRTEF 394

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ RAH+L GL IA+ N+DEV+RIIR S +   A+  LM                 
Sbjct: 395 DLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLM----------------- 437

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  LSE+Q  AILE+RL RLT L    I +EL  + I I +  DILS   
Sbjct: 438 ---------ATFSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKPD 488

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVP 552
           R+  II  EL  V       R T I    L+      ED I  E++VV +S   ++KR+P
Sbjct: 489 RVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLP 548

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  +R Q+RGGKG  G+  + EDFV  L    TH +++ FS+ G  +  KV+ LPI + +
Sbjct: 549 MDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKE 608

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK+L  +++LN  E IT++  F     +++  Y++  T+ G V++ +L +F    +SG
Sbjct: 609 ARGKSLKAVINLNDDEIITSLFTF----RNFDESYLLMVTREGFVKKIQLDEFTNTKKSG 664

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V       D+ + +K G  +R  ++ +R   GR + GV  + L   
Sbjct: 665 IIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRS-QGRTASGVTAMKLEDD 723

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D +  +                                        + VE N +      
Sbjct: 724 DSIAGI----------------------------------------TKVEPNTN------ 737

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +  +SE GFGKRT   +F    R GKG+    + + N  G  V +  V + D+
Sbjct: 738 -------LFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKN--GRAVGISSVKEEDE 788

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +++++  G  IRV V  I +  R+  GV + +T  ++ V     +RES+  D AES
Sbjct: 789 LLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESD-SDSAES 843


>gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1]
          Length = 891

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/907 (39%), Positives = 516/907 (56%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S++   Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDGAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S    + V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC]
 gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC]
          Length = 830

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 351/896 (39%), Positives = 534/896 (59%), Gaps = 91/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ NP+  ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSNPNASIEEILEVMPGPDFPTGGIICGGEGIRSTYHTGRGKIKVR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ +   RE I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S+++++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R EV+ 
Sbjct: 304 VLELKKGESSEIVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LDEVVR IR S + E A+ +L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 413 ---------------NFGFTEQQSVAILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRTRI  +     + ED I  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQDIQRVHKTPRRTRIEFDADDIRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNVKNFE---NAGFLFLATKHGVVKKVALEAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++    T E + ++L T+LG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV                                  K+D SV    
Sbjct: 694 VSLKNENDRVVACQIV----------------------------------KDDQSV---- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 716 ---------------LVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V DND I+L+S +G  IR+ + ++R+  R+T+GV +      + +V++E++  +E
Sbjct: 759 SVTDNDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKDGDILVAMEKLSLNE 814


>gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
 gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
          Length = 870

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 356/918 (38%), Positives = 525/918 (57%), Gaps = 99/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE   +  E E   I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE---TPGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++++ KC+R+ G+VMGKYHPHG++AIYDAL R+ QDWSLR  L+ GQGNFGS 
Sbjct: 58  YDGGYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTEC++   A  ++ D+ +D VDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 118 GDDPAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSA 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +++PD      L+ALM  I+GPDFPT A ILGR G
Sbjct: 178 GIAVGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATILGRKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI +R V  +E+  G R+ +VVTE+PYQVN   + +KIA+LV++ R+  I
Sbjct: 238 IEEAYRTGRGSITMRAVVEVEEIQG-RQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGI 296

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   ++ 
Sbjct: 297 ADIRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSID 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +V+ + +V+ RRT++ L KA +  H+  G   A+  LDEV+ +IR SP+ E AR 
Sbjct: 357 AFVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARN 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q +AIL L+L RL  L R +I +
Sbjct: 417 GLME--------------------------LLGIDELQAQAILNLQLRRLAALQRQEIMD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
             ++L  +I E   IL S  R   I+ +EL +V D+    RRT I+    ++  ED I  
Sbjct: 451 RHDALEADITELNAILGSPERQRTIVSEELATVVDKFGDERRTHILPFDGEVSIEDLIAE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YRAQRRGGKG  G  +R++D V   F+ +TH  +LFF++L
Sbjct: 511 EDVVVTITRGGYAKRTRVDAYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     A+G+ + N+L+   GE+I  ++   + E +    ++V ATK G
Sbjct: 571 GRVYRAKAYELPEAGRDAKGQHVANLLAFQPGEKIAQVLDLRDYEQAE---HLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +L+++      G IA+ L    D R DE+++      + D++L ++ GQ VRF  
Sbjct: 628 LVKKTRLTEYDSNRSGGVIAINLREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTA 687

Query: 711 S--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           S  A+R   GR + GV G+     D +++M +V       ++   +              
Sbjct: 688 SDEALRPM-GRATSGVTGMKFRGDDDLLAMDVV------REDAFLF-------------- 726

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                     +  EG I++             LTV            ++R   R G GI+
Sbjct: 727 ----------TVTEGGIAKRTA----------LTVE-----------NYRQQGRGGLGIK 755

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++ + N  G LV     + +D+++++ ++G ++R   +E+    R T+GV+       
Sbjct: 756 VANLPEAN--GDLVGALVTDADDEVLVIMERGKIVRSATSEVNATGRTTQGVIFAKPDTG 813

Query: 889 ERVVSVERIRESEIVDEA 906
           +R+++V R  E  + D+ 
Sbjct: 814 DRIIAVARNSERHLEDDG 831


>gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1]
          Length = 902

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/906 (39%), Positives = 515/906 (56%), Gaps = 90/906 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +ARG  +  +LS    E+I  +M      S     Y++ AT+ G V++  L  +    
Sbjct: 599 GREARGGHVAGLLSFLPDEKIAQVMTL---RSYDGAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
           ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R                                    
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    V
Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLVV 785

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEIV 903
           ++ D+II +   G + R  V+E+    R+T GV   S    + V    V+ E   E E+ 
Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEVA 845

Query: 904 DEAEST 909
           DE+  T
Sbjct: 846 DESVET 851


>gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1]
 gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2]
 gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2]
 gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1]
 gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1]
 gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2]
 gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1]
 gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2]
 gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1]
 gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2]
 gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4]
 gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3]
 gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1]
 gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1]
 gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1]
 gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2]
 gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1]
 gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2]
 gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2]
 gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3]
 gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2]
 gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1]
 gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2]
 gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3]
 gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1]
 gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2]
 gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2]
 gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2]
 gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1]
 gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1]
 gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2]
          Length = 891

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/907 (39%), Positives = 516/907 (56%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S++   Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDGAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S    + V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 812

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 349/890 (39%), Positives = 519/890 (58%), Gaps = 100/890 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K + K A
Sbjct: 10  VIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEVMGKYHPHG+AAIY  + ++AQ++++R  L++G GNFGS+DGD  AA RYTE R+
Sbjct: 70  NIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTESRM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ KDTVD+RPNYD S +EP VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 130 SRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+V G    IDNPDI ++ LM+ I GPDFPTG ++  R GI+ AY TGRG+I  R    
Sbjct: 190 REIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILEAR-GIRQAYETGRGTIRTRARYE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G +  IVVTEIPYQVNKA ++EKIAELVR+K++  I DLRDESDR+G R+VIEL+
Sbjct: 249 IEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVIELR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  + +VILN+L+R+T ++  F + M++L   +P    L  +++ +V  R+EV+ RRT Y
Sbjct: 309 KDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGEPRILNLKEMIQYYVEHRQEVINRRTTY 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A++R H+L GL IA+ NLDE++ +IR S + E AR EL  R               
Sbjct: 369 ELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSR--------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q  AIL++RL +LTGL R  + NE   + + I +  DIL+   
Sbjct: 414 -----------FNLSEIQANAILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R+L +IK++L  ++      RRT I +     E+ED I   ++V+T+S+ GYVKR PL  
Sbjct: 463 RVLSMIKEDLDDIEKRYGDNRRTEISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPLDT 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+Q+RGGKG S   +R EDF  D+ + S   ++LFF++ G V+  + +++P  S QA+G
Sbjct: 523 YRSQKRGGKGVSATTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKG 582

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             L+N L L  GE++TTI+   E     + L V   TK G +++  L  F  + +SG IA
Sbjct: 583 MPLVNFLELRPGEKVTTIVGAREFNREHHLLMV---TKKGIIKKTALKAFQNVRKSGLIA 639

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V      + +++    G  + F    +R   GR + GV+ I+L+K D V
Sbjct: 640 VNLREDDELVGVIRVKTGSKVMIANSRGISIMFDEKQVRSM-GRTAAGVKAINLSKDDYV 698

Query: 736 ISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +        ++L  +  Y +R                                     
Sbjct: 699 VGLDRYREGADVLLVTEKGYGKRTA----------------------------------- 723

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E KL+       +  G G +       I+ R+GK +    VSK              
Sbjct: 724 -LSEFKLQ-------NRGGKGLKA----IEITRRNGKLVAFQIVSK-------------- 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             D++++++ +G +IR+ V +I    R ++GV++    +++R+V V R +
Sbjct: 758 -EDELVILTSEGNIIRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFK 806


>gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 939

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 344/884 (38%), Positives = 515/884 (58%), Gaps = 88/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCA
Sbjct: 82  VVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 141

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTECRL
Sbjct: 142 RVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRL 201

Query: 136 QKAAHFLLD-----DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
                F LD      +G+  VDF PN+D S +EP +L AR P++L+NG  GIAVGMATNI
Sbjct: 202 DVGCFFFLDIDAIFIIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 259

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V+
Sbjct: 260 PPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVM 319

Query: 251 RGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G 
Sbjct: 320 RGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGM 379

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRGA   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V
Sbjct: 380 RVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSV 439

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L++A +R H++ G+ I + NLD V++IIR + N   AR  L++         
Sbjct: 440 IERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE-------- 491

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  A+L++ L +LT L R    +E  SL  EI +  
Sbjct: 492 ------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLN 533

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547
           ++LS++  +  +I QE   +K++  TPRR+ I +    +++D D I  E+M++ +S  GY
Sbjct: 534 ELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGY 593

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++P
Sbjct: 594 VKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIP 653

Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             +  A G  L+ +LSL+ GERIT+I+P   F ED+      Y+V  T +G +++  L+ 
Sbjct: 654 ECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVMLTVNGYIKKVPLNA 707

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R   GR + GV
Sbjct: 708 FSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGV 766

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             + L +GD++ SM I+                                      +   N
Sbjct: 767 LAMKLKEGDKMASMDII-------------------------------------PATSHN 789

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + E   +   L   ++L +++ G GKR     FR  N +  G++   +     + A+  V
Sbjct: 790 MPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVV 849

Query: 845 -FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            F + D    ++Q++LVS  GT+ R+ V +I I SR+ +GV++ 
Sbjct: 850 GFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 893


>gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
 gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
          Length = 816

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 347/891 (38%), Positives = 521/891 (58%), Gaps = 89/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + +E+++SYL YA++VI+GRA+PD RDGLKPV RR+L+ M+++G+  N+ + K A
Sbjct: 14  VIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLELGLRHNQAFKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE MGKYHPHG+AAIY+ +AR++QD+SLR  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 74  RVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGDPPAAMRYTEARL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ ++TV++ PN+D S QEP+VL +R PN+LVNG  GIAVGMATN+P HNL
Sbjct: 134 HSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIAVGMATNMPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D   A++++P I+L  LM ++ GPDFPTG VILGR GI +AY TGRG +++RG + 
Sbjct: 194 REVIDATCALLEDPQIELGELMALLPGPDFPTGGVILGRDGIVDAYKTGRGKVIVRGCAD 253

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R+ IV+TEIPY VNK +++E IA+  +   +  I DLRDES+R+G RVV+EL 
Sbjct: 254 IEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDESNREGIRVVLELH 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  +++L QLY  T LQS F V  +AL   +P   TL  IL+ F+  R  VV RRT++
Sbjct: 314 RDADPNLVLRQLYSRTQLQSTFGVINLALVDGRPRVLTLHQILQVFLDHRRAVVRRRTEH 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH++ GL  A+  +D+V+ +IR + +P +A+  L++                
Sbjct: 374 RLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVE---------------- 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T+  SEVQ +AIL++RL RLTGL R  +  EL  L  +I+    IL++ S
Sbjct: 418 ----------TLGFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIERYRSILANPS 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L G+++ EL  ++   +  RRTRI + + D+  ED I   ++VV +S  G+++R+PL  
Sbjct: 468 ILDGVVRGELQEIRAAYEDDRRTRIEDAVEDVSAEDLIPESEIVVVLSRDGFLRRMPLQD 527

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-AR 614
           YR Q RGGKG  G   R ED +  + + +TH ++  F+S G V+  + + LP   P+  +
Sbjct: 528 YRCQSRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTLP--EPKTGK 585

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK +   +SL +GER+ T+     D       +V F T+ G  +R  +++   INR+G+ 
Sbjct: 586 GKHVSTFVSLEEGERVVTL----RDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRR 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + L   D I  V     E+++LLTT  GQ +R P    R   GR + GVRG+ L +GD 
Sbjct: 642 ILGLAPEDTIARVRFTGGEDELLLTTAQGQTLRVPEGEFRP-QGRTAHGVRGVRLDEGDL 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   ++                                             E   Q L 
Sbjct: 701 VVGCDVI---------------------------------------------EPGRQVLF 715

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           + E+ I        GKRT   +F   +R G G+RA  +  ++  G LV  + V ++D+++
Sbjct: 716 ISERGI--------GKRTPYDEFTAHHRGGGGVRAMKL--VDRTGDLVGAWGVREDDELV 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++S KG ++R+   EI    RA  G  +    + + V  V  IR +++ +E
Sbjct: 766 VISAKGRMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSIIRCADLEEE 816


>gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
 gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
          Length = 818

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 349/894 (39%), Positives = 510/894 (57%), Gaps = 87/894 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    +  + I DE++ +++ Y+++VI+ RA+PD RDGLKPVHRRI++ M +  +    K
Sbjct: 5   ENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSAGGK 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA I G+V+GKYHPHG+A++YDAL R+ QD+S R +++   GNFG++ GDPPAA RY
Sbjct: 65  TKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAAYRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K A  +++D+ KDTVD  PNYD + +EP VL +++P +L NG  GIAVGMATN+
Sbjct: 125 TEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV     A IDN +I +D L+  I+GPDFPTG +I G+ GI +AY TGRG I++
Sbjct: 185 PPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIFGKHGIADAYRTGRGKILV 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RG  +IE +    E IV TE+PY VN   + EKI EL R+K I  I+ + DE SDR G R
Sbjct: 245 RGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDRSGMR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKRGA   V++NQL+  T+LQS F V  +AL   +P+   L  I+K FV  R+EV+
Sbjct: 305 IVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVKGRPQILNLKQIIKCFVDHRDEVI 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  + LNKAR R H+L  L  AV  +DEV+++IR S +   A+  LMQR         
Sbjct: 365 TRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQR--------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                       G D      E+Q  AI+E+RL RLT L  D++R E+  +   I  C D
Sbjct: 416 -----------FGFD------EIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAHCED 458

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L IIK E   + ++    R+T IV G ++ +  ED I  EDMV+ +S LGY+
Sbjct: 459 LLAHHEKILAIIKDETNELSEKYGDDRKTDIVAGEVESINVEDLIKEEDMVILISKLGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV +S Y++Q RGGKG     + +ED++  +F+ STH  ++F ++ G  Y  KV  +P 
Sbjct: 519 KRVSVSQYKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHEIPE 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  +RG  + ++L++N  E ITTI+     E S NN Y+  AT +G V++   SDF   
Sbjct: 579 ASKTSRGSHIKSLLAVNANEDITTIVSLK--EFSENN-YLFMATANGVVKKTPTSDFKNA 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G  A++LD  D ++S    T ++++LL ++ GQ +R     +R   GR+S GV G+ 
Sbjct: 636 KSRGMQAVRLDEGDTLVSAILSTGKDELLLVSRRGQALRINEEDVRPM-GRSSRGVAGLK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++GD++ S AI +H + D                                         
Sbjct: 695 LSEGDELCS-AIRIHTEPDSK--------------------------------------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPV 847
                      IL V+EKG GKR  S +F   N  G+G     +   + + G ++    V
Sbjct: 715 -----------ILVVTEKGIGKRVDSAEF---NAHGRGTGGQKIFGNVEDKGEIIGALCV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            D D I+ ++ +GT +RV   +I +  R   G+ + S    + VV V+RI   E
Sbjct: 761 RDTDSIMCITSQGTSVRVEAKDITVQGRGASGIKVVSITDPDYVVGVDRIANDE 814


>gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R]
 gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 856

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 315/733 (42%), Positives = 466/733 (63%), Gaps = 38/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ YVK A
Sbjct: 12  VNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNGYRPDRSYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   + MG +HPHG+ AIYD L RMAQ WS+R  L++GQGNFGS   D PAA RYTECR+
Sbjct: 72  KPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NPD +    L+A M+ ++GPDFPT  +I+G  GI +AY TGRGSI +R
Sbjct: 192 NELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKGIHDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L++++ LQ+ F  NM+++    P    L  +L+ +VA + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP P+ AR  LM           L
Sbjct: 371 RRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGLMS----------L 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E Q  AIL ++L RL  L R  I +EL  + +EI +  DI
Sbjct: 421 LD----------------VDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL  + ++    RR++I+    D+ +ED I RE++V+T++  GY KR
Sbjct: 465 LASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIARENVVITITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 525 TKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEAS 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669
             ARG+ + N+L    GE+I  ++       S+N+  Y+V AT HG V++++L D+    
Sbjct: 585 RTARGQHVANLLEFQPGEQIAQVIQL----ESYNDFPYLVLATAHGRVKKSRLLDYESAR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
             G IA+ L+  D ++    C +E+D+LL ++ GQ +RF     ++   GR + GV+G+ 
Sbjct: 641 SGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMR 700

Query: 729 LAKGDQVISMAIV 741
               DQ++SM++V
Sbjct: 701 FRDNDQLLSMSVV 713


>gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 853

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/894 (36%), Positives = 522/894 (58%), Gaps = 88/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 46  ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 105

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 106 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 165

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T IP HNL
Sbjct: 166 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 225

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +IR  + 
Sbjct: 226 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 285

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K
Sbjct: 286 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 345

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ +R   +
Sbjct: 346 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 405

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L                  
Sbjct: 406 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 449

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   I+ S  
Sbjct: 450 ----------TYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 499

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK++ L  
Sbjct: 500 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDE 559

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P GS Q +G
Sbjct: 560 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 619

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I ++GKIA
Sbjct: 620 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 676

Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +KL   D ++S        D  IL+ +  G   R+ I  +R  +GR ++GV+GI L +G 
Sbjct: 677 LKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 735

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I                C+                                       
Sbjct: 736 KIIGA--------------CFA-------------------------------------- 743

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                FI ++S+KGFGK+T   ++R++ R+ KG+ + D  K    G LV +  + +N + 
Sbjct: 744 -FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNQEA 799

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 800 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 866

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 342/901 (37%), Positives = 515/901 (57%), Gaps = 93/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRRI++ M   G    + YVK A
Sbjct: 17  VSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYAMYDNGYRPERSYVKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG +HPHG++AIYD L RMAQ WS+R  L++GQGNFGS   D PAA RYTECRL
Sbjct: 77  RPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 137 TPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGSGGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+       +D+ D D    L+A+ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 197 TELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDKGIKDAYTTGRGSIKMR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G R  IV+TE+PYQVN   ++  IAE VR+ +I  I+ + DE SDR G R+
Sbjct: 257 GVTSIEEERG-RTIIVITELPYQVNPDNLVSSIAEQVRDGKIAGISKIDDESSDRVGMRI 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + +V+V
Sbjct: 316 VVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQLLRLYVDHQIDVIV 375

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL  A+  LDEV+ +IR S  PE AR  LM          DL
Sbjct: 376 RRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEIARTGLM----------DL 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q  AIL +RL +L  L R  I +EL  L + I +  DI
Sbjct: 426 LD----------------IDELQADAILRMRLRQLAALERQKIIDELKELELTIADLKDI 469

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  + +     RRT+I+    D+ +ED I RE++V T++  GY KR
Sbjct: 470 LARPERQRQIVRDELEEIVNNYGDDRRTQIIAATGDVTEEDLIARENVVATITSTGYAKR 529

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             + +YR Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 530 TKVDLYRNQKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTNFGRVYRLKAYELPEAS 589

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L    GE I  ++     ++  +  Y+V ATK G V+++KL+D+     
Sbjct: 590 RTARGQHVANLLEFQPGEHIAQVIQL---QTYEDAPYLVLATKQGRVKKSKLTDYDSARS 646

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G IA+ L+  D ++  + C+  +D+LL ++ GQ +RF      +R   GR + GV+G+ 
Sbjct: 647 GGLIAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDTLRPM-GRATAGVKGMR 705

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D ++++ +V                                  + DS         
Sbjct: 706 FRGEDALLALTVV----------------------------------REDS--------- 722

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     +++  +  G+ KRT   ++    R G G+     +K  + G L+    V+
Sbjct: 723 ----------YLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKYNK--KRGKLIGALVVD 770

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +D+I  ++  G+++R  V +IR +SR T GV +    K   +++++R  E E  + A  
Sbjct: 771 QDDEIFCITTDGSVVRSNVKDIRPSSRQTMGVRLVHLDKGSELLAIDRNVEDEGEEHAAK 830

Query: 909 T 909
           T
Sbjct: 831 T 831


>gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 645

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 303/626 (48%), Positives = 427/626 (68%), Gaps = 26/626 (4%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           ++V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K AR
Sbjct: 41  SNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSAR 100

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE R+ 
Sbjct: 101 IVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMA 160

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K    LL D+GKDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 161 KITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLG 220

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG VA+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G   +
Sbjct: 221 EVVDGIVALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEV 280

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E +   +E I+VTE+PYQVNKA ++EKIA+LVR+K+I  I+DLRDE+DR G R+VIELK+
Sbjct: 281 ETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKK 340

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  +++ILN LY++T LQ+ F V M+AL    P    L  +L+ ++  R EV+ RRT++ 
Sbjct: 341 GEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEFE 400

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA++RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +                
Sbjct: 401 LKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIAKFG-------------- 446

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        SE+Q +AIL++RL RLTGL RD I  E N L + I+E   ILS  S+
Sbjct: 447 ------------FSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSK 494

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           + GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +  Y
Sbjct: 495 IYGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTY 554

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R+Q+RGG G +     ++D V D++I  T  ++L F++ G V+  KV+ +P    QARGK
Sbjct: 555 RSQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGK 614

Query: 617 ALINILSLNQGERITTIMPFPEDESS 642
            + NI++L+  E+++TI+   E E +
Sbjct: 615 LIGNIINLDTDEKVSTIIRVREFEKN 640



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 36/162 (22%)

Query: 770 EEITS-LKNDSSVEGNISEERCQELKLKEQF--------------------------ILT 802
           EE+T  L +DS + G I EE    LKLKE F                          ++T
Sbjct: 483 EELTGILSDDSKIYGIIKEE---ALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVT 539

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++EKG+ KR +   +R   R G G+ AT+     E   +  ++     D +++ + KG +
Sbjct: 540 LTEKGYVKRVAIDTYRSQKRGGIGVNATNTI---EDDVVKDMYIAKTLDTLLIFTTKGKV 596

Query: 863 IRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRESE 901
             V V EI    +  +G +   I +   DE+V ++ R+RE E
Sbjct: 597 FSVKVYEIPETGKQARGKLIGNIINLDTDEKVSTIIRVREFE 638


>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
          Length = 931

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 344/884 (38%), Positives = 515/884 (58%), Gaps = 88/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCA
Sbjct: 82  VVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 141

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTECRL
Sbjct: 142 RVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRL 201

Query: 136 QKAAHFLLD-----DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
                F LD      +G+  VDF PN+D S +EP +L AR P++L+NG  GIAVGMATNI
Sbjct: 202 DVGCFFFLDIDAIFIIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 259

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V+
Sbjct: 260 PPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVM 319

Query: 251 RGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G 
Sbjct: 320 RGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGM 379

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRGA   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V
Sbjct: 380 RVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSV 439

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L++A +R H++ G+ I + NLD V++IIR + N   AR  L++         
Sbjct: 440 IERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE-------- 491

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  A+L++ L +LT L R    +E  SL  EI +  
Sbjct: 492 ------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLN 533

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547
           ++LS++  +  +I QE   +K++  TPRR+ I +    +++D D I  E+M++ +S  GY
Sbjct: 534 ELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGY 593

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++P
Sbjct: 594 VKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIP 653

Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             +  A G  L+ +LSL+ GERIT+I+P   F ED+      Y+V  T +G +++  L+ 
Sbjct: 654 ECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVMLTVNGYIKKVPLNA 707

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R   GR + GV
Sbjct: 708 FSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGV 766

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             + L +GD++ SM I+                                      +   N
Sbjct: 767 LAMKLKEGDKMASMDII-------------------------------------PATSHN 789

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + E   +   L   ++L +++ G GKR     FR  N +  G++   +     + A+  V
Sbjct: 790 MPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVV 849

Query: 845 -FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            F + D    ++Q++LVS  GT+ R+ V +I I SR+ +GV++ 
Sbjct: 850 GFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 893


>gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 853

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/894 (36%), Positives = 523/894 (58%), Gaps = 88/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 46  ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 105

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 106 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 165

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T IP HNL
Sbjct: 166 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 225

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +IR  + 
Sbjct: 226 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 285

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K
Sbjct: 286 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 345

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ +R   +
Sbjct: 346 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 405

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L                  
Sbjct: 406 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 449

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   I+ S  
Sbjct: 450 ----------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 499

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK++ L  
Sbjct: 500 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDE 559

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P GS Q +G
Sbjct: 560 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 619

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I ++GKIA
Sbjct: 620 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 676

Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +KL   D ++S        D  IL+ +  G   R+ I  +R  +GR ++GV+GI L +G 
Sbjct: 677 LKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 735

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I                C+                                       
Sbjct: 736 KIIGA--------------CFA-------------------------------------- 743

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                FI ++S+KGFGK+T   ++R++ R+ KG+ + D  K    G LV +  + +N++ 
Sbjct: 744 -FDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNEEA 799

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 800 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100]
          Length = 836

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 345/888 (38%), Positives = 516/888 (58%), Gaps = 93/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 15  VEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPERGYVKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   + MG YHPHG+ AIY  L RMAQ W++R  L++GQGNFGS   D  AA RYTECR+
Sbjct: 75  KPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTECRM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ ++ ++TVDF+PNYDG  +EPV+L +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 135 TPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGSGGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    ++DN        L+A M+ ++GPDFPT  +I+G  GI++AY TGRGSI +R
Sbjct: 195 NELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDKGIQDAYRTGRGSIRMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R+ IV+TE+PYQVN   ++  IAE VR+ +I  IA + DE SDR G R+
Sbjct: 255 GVTSIEE-EGNRQVIVITELPYQVNPDNLVHNIAEQVRDGKIAGIARIDDESSDRVGLRI 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + EV+V
Sbjct: 314 VVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVKHQIEVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + AR             + L
Sbjct: 374 RRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDIAR-------------EGL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL+D             + E+Q  AILE++L RL  L R  I + L  +   I +  DI
Sbjct: 421 IDLLD-------------IDEIQANAILEMQLRRLAALERQKIIDALAEIEETIADLKDI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  + ++    RRT+IV    D+ +ED I RE++VVT++  GY KR
Sbjct: 468 LARPERQRDIVRGELEEIVEKFGDERRTKIVAASGDVSEEDLIARENVVVTITSTGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR+QRRGGKG  G  ++ +D V   F+ STH ++LFF++ G VY+ + + LP  S
Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAS 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L    GE+I  ++     +S  +  Y+V AT HG V++++L+D+     
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQI---QSYEDAPYLVLATSHGRVKKSRLTDYDSPRS 644

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G IA+ L+  D ++  + CT E+D+LL ++ GQ +RF      +R   GR + GV+G+ 
Sbjct: 645 GGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVLRPM-GRATAGVKGMR 703

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + DQ++++ +V                                               
Sbjct: 704 FREDDQLLALTVV----------------------------------------------- 716

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             QE    + ++   +  G+GKRT   ++    R G G+      K  + G L+    V 
Sbjct: 717 --QE----DAYLFVATSGGYGKRTKMEEYPAKGRGGLGVVTFKYDK--KRGKLIGALTVQ 768

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+ ++  G +IR  VN+IR  SRAT GV +    KD  +V+V+R
Sbjct: 769 EDDEILAITSAGGVIRTEVNQIRHTSRATMGVRLVDLGKDVELVAVDR 816


>gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1]
          Length = 891

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 353/907 (38%), Positives = 516/907 (56%), Gaps = 92/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D +  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668
              ARG  +  +LS    E+I  +M       S++   Y++ AT+ G V++  L  +   
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDGAEYLLLATRKGMVKKTALKAYDSS 654

Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
            ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G
Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D+++SM+I+ H+D   D+R                                   
Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    
Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902
           V++ D+II +   G + R  V+E+    R+T GV   S    + V    V+ E   E E+
Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844

Query: 903 VDEAEST 909
            DE+  T
Sbjct: 845 ADESVET 851


>gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 868

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/894 (36%), Positives = 522/894 (58%), Gaps = 88/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 61  ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 120

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 121 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 180

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T IP HNL
Sbjct: 181 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 240

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +IR  + 
Sbjct: 241 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 300

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K
Sbjct: 301 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 360

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ +R   +
Sbjct: 361 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 420

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L                  
Sbjct: 421 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 464

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   I+ S  
Sbjct: 465 ----------TYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 514

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK++ L  
Sbjct: 515 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDE 574

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P GS Q +G
Sbjct: 575 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 634

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I ++GKIA
Sbjct: 635 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 691

Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +KL   D ++S        D  IL+ +  G   R+ I  +R  +GR ++GV+GI L +G 
Sbjct: 692 LKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 750

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I                C+                                       
Sbjct: 751 KIIGA--------------CFA-------------------------------------- 758

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                FI ++S+KGFGK+T   ++R++ R+ KG+ + D  K    G LV +  + +N + 
Sbjct: 759 -FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNQEA 814

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 815 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868


>gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
          Length = 862

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 352/899 (39%), Positives = 521/899 (57%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK A
Sbjct: 12  IQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RYTECR+
Sbjct: 72  RPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    ++DNP+      L A ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 192 NELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R+ IV+TE+PYQVN   M+  IAE V   +I  IA + DE SDR G R+
Sbjct: 252 GVTSIEEV-GNRQTIVITELPYQVNPDNMISNIAESVVNGKIAGIAKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +L  +VA + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSYYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  E AR  LMQ           
Sbjct: 371 RRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEAREGLMQ----------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +G D      E+Q  AIL +RL RL  L R  I +EL  +   I +  DI
Sbjct: 420 ---------LLGVD------EIQADAILAMRLRRLAALERQKIIDELAEIEEIIADLKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + ++    RRT+IV    D+ DED I RE++VVT++  GY KR
Sbjct: 465 LAREERQREIVHDELEEIVEKYGDERRTQIVAASGDVSDEDLIARENVVVTITATGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ G VY+ K + LP   
Sbjct: 525 TKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G V++++L+D+     
Sbjct: 585 RTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++  +   + +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ++SM++V    +D    +        +R  I    EE T                
Sbjct: 702 RGDDQLLSMSVV----SDGQFLLVATSGGYGKRTAI----EEYTPQ-------------- 739

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                            G G  T    F+ + + GK I A  V +               
Sbjct: 740 --------------GRGGLGVMT----FKYTPKRGKLIAAISVDE--------------- 766

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D+I  ++  G ++R  VN+IR +SRAT GV + + A D  +++++R  E +  ++A++
Sbjct: 767 DDEIFAITSAGGVVRTEVNQIRPSSRATMGVRLVNLADDVELLAIDRNVEDDGEEDAQA 825


>gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08]
          Length = 891

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 352/903 (38%), Positives = 515/903 (57%), Gaps = 87/903 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV       + +PD      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIAELV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +  +LS    E+I  +M      S  +  Y++ AT+ G V++  L  +    
Sbjct: 599 GRDAKGGHVAGLLSFLPDEKIAQVMTL---RSYEDAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
           ++G IA+   + D E++  E C+  +D+LL ++ GQ +RF     ++ + GR + GV G+
Sbjct: 656 QAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R                                    
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    V
Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGLGIKAMALSE--ERGSLVGGLVV 785

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D+II +   G + R  V+E+    R+T GV  F + + +  VS+  +     V+E  
Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVK-FVSVRGKDAVSIIALNPEHAVEEKV 844

Query: 908 STE 910
           + E
Sbjct: 845 TEE 847


>gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2]
 gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1]
 gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3]
          Length = 891

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 352/903 (38%), Positives = 515/903 (57%), Gaps = 87/903 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV       + +PD      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIAELV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +  +LS    E+I  +M      S  +  Y++ AT+ G V++  L  +    
Sbjct: 599 GRDAKGGHVAGLLSFLPDEKIAQVMTL---RSYEDAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
           ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++ + GR + GV G+
Sbjct: 656 QAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R                                    
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    V
Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGLGIKAMALSE--ERGSLVGGLVV 785

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D+II +   G + R  V+E+    R+T GV  F + + +  VS+  +     V+E  
Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVK-FVSVRGKDAVSIIALNPEHAVEEKV 844

Query: 908 STE 910
           + E
Sbjct: 845 TEE 847


>gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 881

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 357/901 (39%), Positives = 515/901 (57%), Gaps = 96/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++GM   G   ++ + KCA
Sbjct: 32  IEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDRAFNKCA 91

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG++HPHG++AIYDAL R+ Q W++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 92  RIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 151

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 152 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATNIPPHNL 211

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    + NP+      L ALME I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 212 REVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGRGSITMR 271

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIA+L++E ++  I+DLRDE S R G R+
Sbjct: 272 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQRL 330

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A   V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  + +V+V
Sbjct: 331 VIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNHQMDVIV 390

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM          D 
Sbjct: 391 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM----------DF 440

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E Q +AIL ++L RL  L R  I++  + L   I E   I
Sbjct: 441 LD----------------IDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLIAEYNAI 484

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549
           ++S  R   II +EL  + +     RRT I+ G   DM  ED I  E++VVT++  GY+K
Sbjct: 485 IASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTITRGGYIK 544

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K + L   
Sbjct: 545 RTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQEA 604

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ L N+L     E I  +M     E +    Y+V ATK G V++++LSD+    
Sbjct: 605 GRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAE---YLVLATKGGLVKKSRLSDYDTNR 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S    + E+DILL ++ G  +RF  +  ++R   GR++ GV G+
Sbjct: 662 TAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRSTSGVTGM 720

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               GD++IS  +V+                                             
Sbjct: 721 KFRDGDELISAQVVI--------------------------------------------- 735

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFP 846
                    E F+  V+E G+ KRT    +R+  R+G GI+   V+K+ E  GALV    
Sbjct: 736 --------PESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIK---VAKLVEGRGALVGGLI 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V++ND++++V   G ++R  V+E+    R T GV+     K + ++ + R ++ ++ ++ 
Sbjct: 785 VSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQK 844

Query: 907 E 907
           E
Sbjct: 845 E 845


>gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
          Length = 850

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 352/899 (39%), Positives = 527/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 12  IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RYTEC+L
Sbjct: 72  RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +    ++DNPD D    L+A ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 192 NELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+ SG R+ IV+TE+P+QVN   ++  IAE V   +I  I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVASGKIAGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVEHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR  L          K+L
Sbjct: 371 RRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ D                +Q  AIL ++L +L  L R  I +EL  +  EI +  DI
Sbjct: 421 LDVDD----------------IQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + D+    RRT I+    D+ DED I RE++VVT++  GY KR
Sbjct: 465 LAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIARENVVVTITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ G VY+ K + LP G 
Sbjct: 525 TKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G V++++L+D+     
Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ++SM++V      +D     +          SG   + T++           EE 
Sbjct: 702 RGDDQLLSMSVV------HDGEFLLVA--------TSGGYGKRTAI-----------EEY 736

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +              G G  T    F+ + + GK I A  V + +EI A+ +      
Sbjct: 737 TPQ-----------GRGGLGVMT----FKYTPKRGKLIGAISVDEDDEIFAITSA----- 776

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
                     G +IR  V++IR +SRAT GV + + A D  +++++R  E +  ++A++
Sbjct: 777 ----------GGVIRTEVDQIRPSSRATMGVRLVNLADDVELLAIDRNVEEDGEEDAQA 825


>gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 868

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/894 (36%), Positives = 523/894 (58%), Gaps = 88/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 61  ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 120

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 121 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 180

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T IP HNL
Sbjct: 181 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 240

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +IR  + 
Sbjct: 241 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 300

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K
Sbjct: 301 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 360

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ +R   +
Sbjct: 361 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 420

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L                  
Sbjct: 421 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 464

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   I+ S  
Sbjct: 465 ----------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 514

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK++ L  
Sbjct: 515 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDE 574

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P GS Q +G
Sbjct: 575 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 634

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I ++GKIA
Sbjct: 635 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 691

Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +KL   D ++S        D  IL+ +  G   R+ I  +R  +GR ++GV+GI L +G 
Sbjct: 692 LKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 750

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I                C+                                       
Sbjct: 751 KIIGA--------------CFA-------------------------------------- 758

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                FI ++S+KGFGK+T   ++R++ R+ KG+ + D  K    G LV +  + +N++ 
Sbjct: 759 -FDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNEEA 814

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 815 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868


>gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
 gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
          Length = 863

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 347/887 (39%), Positives = 516/887 (58%), Gaps = 91/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRR+L+ M   G   ++ YVK A
Sbjct: 12  IQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAMYDNGYRPDRSYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   + MG YHPHG+ AIYD L RMAQ WS+R  L++GQGNFGS   D PAA RYTECR+
Sbjct: 72  KPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NPD D    L+  ME ++GPDFPT  +I+G  GI +AY TGRGSI +R
Sbjct: 192 NELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDKGIHDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN L++++ LQS F  NM+++    P    L  +L+ +VA + EV+V
Sbjct: 311 VVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  E AR  LM           L
Sbjct: 371 RRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARDGLMS----------L 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + ++Q  AILE++L RL  L R+ I NELN L   I +  DI
Sbjct: 421 LD----------------VDQIQADAILEMQLRRLAALEREKIVNELNELETIIADLKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL  + ++    RR++I+    D+ +ED I RE++VVT++  GY KR
Sbjct: 465 LASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIARENVVVTITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 525 TKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEAS 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++     E +    Y+V AT  G V++++L+D+     
Sbjct: 585 RTARGQHVANLLEFQPEERIAQVIQIQTYEDAP---YLVLATAQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++      + +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GDQ+++M++V   D ++                       + +          ISE  
Sbjct: 702 REGDQLLAMSVV--RDGEF----------------------LLVATSGGYGKRTPISEYS 737

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            Q               G G  T    F+ + + G+ I A  V + +EI A+ +      
Sbjct: 738 TQ------------GRGGLGVVT----FKYTPKRGRLIGALAVEEDDEIFAITSA----- 776

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                     G +IR  VN+IR +SRAT GV + +   D  ++++++
Sbjct: 777 ----------GGVIRTEVNQIRPSSRATMGVRLVNLQDDVELLAIDK 813


>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
          Length = 950

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 344/900 (38%), Positives = 521/900 (57%), Gaps = 72/900 (8%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E + SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++ NK + KCAR+ GEV+G
Sbjct: 89  EAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLQHNKPFRKCARVVGEVLG 148

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFL 142
           K+HPHG+ A+YDAL R+AQD+S+R+ L++G GNFGS+D DPPAA RYTECRLQ  A+  L
Sbjct: 149 KFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPPAAMRYTECRLQAVASAML 208

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L DL  DTVDF PN+D S  EP VL AR PN+L+NG  GIAVG+AT IP HN+ EVV+G 
Sbjct: 209 LADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAVGIATKIPPHNMREVVEGL 268

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAV-----ILGRTGIKNAYATGRGSIVIRGVSHIE 257
            A+I NPDI +  LM  I  PDFPTGA+     I+    ++ AY  G+G I++R   HIE
Sbjct: 269 KALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQAYEEGKGGILMRAKIHIE 328

Query: 258 KTSGD---REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             S     +  +V+TE+PYQ NK+A++E+IA LV    +  ++D+RDESDR G RVV+E+
Sbjct: 329 DGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGVSDIRDESDRDGVRVVVEV 388

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG +AD++LNQL ++T++QS FS NMVAL G  P   TL   L+ F++FR EVV RR +
Sbjct: 389 KRGGNADLVLNQLLKHTAVQSRFSANMVALVGATPLTLTLKNFLQHFLSFRCEVVERRAR 448

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +A+ R H++ G   A+ +LD VV  IR                  ASD    + ++
Sbjct: 449 HDLLRAQQRLHLVDGFVTAMRDLDAVVHAIR-----------------QASDGAAALVVL 491

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             S +         LS  Q   +L + L RLT L    ++ E   L  +I +  D+L  +
Sbjct: 492 RASPFG--------LSREQAEGVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQ 543

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            R+L ++  E   +  +  TPRRT I+ +G +++  ED I     +V  S  GY+KRV  
Sbjct: 544 DRILQVVTSEAEELAAKFGTPRRTHIITDGEVELRHEDVIPNAPSLVVYSRRGYIKRVRP 603

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + AQ+RGG G++G  ++++D + ++  V+ H  +LFF++ G  Y  + + +P G+  A
Sbjct: 604 DTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTA 663

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKLSDFIQINRS 671
            G A+  +L  ++  RI  ++P     ++  +    VV  T+ G ++R  L  F  INRS
Sbjct: 664 VGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRS 723

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G +AM +   D +  V  C+  + +L+    G    F I+ +R   GR +VG + ++L+K
Sbjct: 724 GLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITKLRRM-GRAAVGNKSMTLSK 782

Query: 732 GDQVISMAIV---LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           G  +++MAI+   + A+   DE                 D   I    +    EG  +E 
Sbjct: 783 GTDIVAMAILPAGIVAEGPNDE-----------------DYLSIEGSHDMDYSEGKAAET 825

Query: 789 RCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +    +EQ    ++L V+++G GKRT   +FR+  R+G GI+A  ++  + + A+   
Sbjct: 826 PAESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRARTGSGIQALRLNLGDRLAAVQDE 885

Query: 845 FPVNDNDQ----------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                             ++L + +G L+RVPV ++ I SR  KG  +    + + VV+ 
Sbjct: 886 SSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIHSRFAKGHRLVKVRQGDEVVAA 945


>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
 gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 875

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 350/879 (39%), Positives = 523/879 (59%), Gaps = 71/879 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVD+  N+DGS QEP+VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++DG  A+I NP++    LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLLTLRKMLQVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  TAR++L +      
Sbjct: 374 VDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHG--- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 431 -----------------------LTEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL  R R+  +I+ EL  ++++   PRRT I++    +ED D I  E  VV ++  
Sbjct: 468 NYKDILGRRERVFALIEDELAKLREKHCLPRRTEILDLGGGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  ++ +L + + E IT+++      S  ++ +++  TK G ++R  LS F
Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITSLLSV---ISFDDDTHLLMLTKGGFIKRTSLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723
            +I  +G IA+ L+  D +  V      + +L+ ++ G  + F +    +R   GR + G
Sbjct: 645 SKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPL-GRTARG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS--SV 781
           VR ++L  GD ++SM ++    AD                      +   SL++D   SV
Sbjct: 704 VRAMNLRGGDSLVSMDVLPVELAD----------------------QVAKSLEDDPDDSV 741

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           E  +  +          ++L  S  G GKR     FR+  R+G G+RA    +  E   L
Sbjct: 742 ETVVVSD--------GPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRR--EGDEL 791

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           V +  +   ++++LVS++G ++R   ++I   SRA  GV
Sbjct: 792 VGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGV 830



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLG 596
           +V + S LG  KRVP++ +R Q+R G G   +  R E D +  L ++     +L  S  G
Sbjct: 753 LVASASGLG--KRVPVNQFRLQKRAGMGLRAIKFRREGDELVGLRVLGYGEELLLVSERG 810

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
            + +    ++P    Q+R    + +  L+ G+R++ ++  P D    + 
Sbjct: 811 VIVRTSADKIP---QQSRAATGVRLQRLDAGDRLSEVVLVPPDSEDQDQ 856



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L   E+ ++ ++E G+ KR    +F  ++R  +G +A   S+  E  A+      ND+D
Sbjct: 513 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
            ++L SD+G    +P   +   SR  KG   V +    ++E + S+
Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSL 615


>gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
          Length = 935

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 364/911 (39%), Positives = 535/911 (58%), Gaps = 74/911 (8%)

Query: 9   DEEEEKGITSVSITD---EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + E+  G   V +T+   E   +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M ++G+
Sbjct: 80  ENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGL 139

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR  LI G GNFGS+D DPP
Sbjct: 140 SSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPP 199

Query: 126 AAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RYTECRL+      LL DL ++TVDF PN+D S +EP +L AR PN+L+NG  GIAV
Sbjct: 200 AAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAV 259

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI  A+ TG
Sbjct: 260 GMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAFRTG 319

Query: 245 RGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           RG +VIRG + IE   +   R  I++ EIPYQ NKA+++EKIA+LV  K +  ++D+RDE
Sbjct: 320 RGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDE 379

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIELKRG+   ++LN LYR T+LQS FS NMV +   +P+   L  +L+AF+
Sbjct: 380 SDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFL 439

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR  VV RR ++ L++A++R H++ G+ + + NLDEV+  I         R+       
Sbjct: 440 DFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTI---------RKASSNALA 490

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            AS  K+                   LSE Q  AIL++ L RLT L R+    E  SL  
Sbjct: 491 AASLRKEF-----------------ELSEKQAEAILDISLRRLTALERNKFVEEGKSLRT 533

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVT 541
           +I +  ++LSS+ ++L +I++E + +K++   PRR+ + +    D+ED D I  E+M++ 
Sbjct: 534 QISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLA 593

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GYVKR+    +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G VY  
Sbjct: 594 ISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSS 653

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +++P  S  A G  L+ ILSL+ GERIT+I+P  E  +   + Y+V  T +G +++  
Sbjct: 654 PAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAA---DQYLVMLTVNGYIKKVS 710

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F  I  +G IA++L   DE+  V+ C+  + + + ++ G  +  P + IR   GRN+
Sbjct: 711 LNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRAL-GRNT 769

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G   + L +GD+V SM I+   DA   E     K +  Q+R                  
Sbjct: 770 RGSVAMRLKEGDKVASMDII--PDALQKE---LDKTLEVQQR------------------ 806

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                    Q   +K  ++L VSE G+GKR     FR S  +  G+     S  + + A+
Sbjct: 807 ---------QYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSEDCLAAV 857

Query: 842 VAV-FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V F + +    ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   
Sbjct: 858 FVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGKIQSASL 917

Query: 897 IRESEIVDEAE 907
           I  ++   E E
Sbjct: 918 ISAADADPEDE 928


>gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
 gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
          Length = 821

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 366/886 (41%), Positives = 518/886 (58%), Gaps = 91/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I DEM+ SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M +MGV     + K +
Sbjct: 16  IEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMEEMGVTSRSGHRKSS 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MG YHPHG++AIYDALARMAQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 76  SIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSVDGDPPAAMRYTEARM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  NYD    EPVVL AR PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 136 APIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGASGIAVGMSTNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI------IRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           GEV+D  + +IDNPD  +  L++       I+GPDFPTGA I+ R GI +AY  GRG + 
Sbjct: 196 GEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIVNREGIWDAYTEGRGRLR 255

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T    ++IVVTE+PYQ NKA  +E+IAE V+E +I  I D+RDESDR G R
Sbjct: 256 VRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIEGIRDIRDESDRDGVR 315

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE KRG++ADV+ NQL  +  L++ FS+  +AL   +P    L  +L+AFV  R EVV
Sbjct: 316 VVIECKRGSNADVVKNQLLEH-HLENTFSIISLALVDDQPRVLNLKELLEAFVGHRREVV 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L +A+DRAH+L G  +A+ N+D+VV  I+ S + + A   L +++++      
Sbjct: 375 RRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRDAAMAAL-RKAYD------ 427

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q   I+ ++L  LT +   +I  E   +  EI+    
Sbjct: 428 -------------------LSEDQAEHIVRMQLGSLTSMEAGEIETEYEDVQAEIERLET 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+  S LLG+IK EL  +K E    R+T ++E    +  ED I  E++VV V+   YVK
Sbjct: 469 ILNDESELLGVIKDELRDIKAEYADERQTDVIEDAGSVTREDLIAEEEVVVVVTEEDYVK 528

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS +  Q RGGKG  G   ++ D V+ +F  STH  +L F++ G VY+ KV+ LP  
Sbjct: 529 RMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFELPEM 588

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG + +N+L LN GE IT ++    +    +  Y+  AT+ G V+R  +S+F  ++
Sbjct: 589 GRTARGTSAVNVLDLNDGEEITAVV----NTDDIDEGYLAMATEAGYVKRTAVSEFENVH 644

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G  A+ L+  D ++ VE    + D+L+ TK G  +RF  S  R   GR++ GV GI L
Sbjct: 645 AGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPM-GRSARGVNGIKL 703

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD   +  +   +D D D                                        
Sbjct: 704 -EGDDRATGLVAASSDDDRD---------------------------------------- 722

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +LTV++ G+GKRT   ++R  +R GKG+   D+      G + ++  V++
Sbjct: 723 ----------LLTVTKNGYGKRTPLSEYRRQSRYGKGL--VDIKTDERNGPVCSLDAVSE 770

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +D ++++S+ G ++R  V+EI    R TKGVV+ S   D+R+  ++
Sbjct: 771 DDGLVIMSESGQIMRTTVDEISTVGRNTKGVVVMSVDDDDRIAGID 816


>gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928]
 gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928]
          Length = 875

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 330/733 (45%), Positives = 465/733 (63%), Gaps = 38/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G    K Y KCA
Sbjct: 10  IDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGYYKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG++ IYD L R+AQ WSLR++L++G GNFGS   DP AA RYTEC++
Sbjct: 70  RVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAAMRYTECKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDFRPNYDG   EPVVL AR+PN+LVNG  GIAVGMATNIP+HNL
Sbjct: 130 APLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMATNIPSHNL 189

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    + NP+      L+AL+E I+GPDFPTGA+I+GR GI++AY TGRGSI +R
Sbjct: 190 REVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIVGRRGIEDAYRTGRGSITMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   +  KIAELV++ ++  IAD+RDE S R G R+
Sbjct: 250 AVVNTEEING-RMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDESSSRTGQRL 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P   +L   ++ +V  + +V+V
Sbjct: 309 VIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDDVPRTLSLDAFIRHWVTHQIDVIV 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA++RAH+LVGL  A+  +DEVV +IR SP  + AR  L++           
Sbjct: 369 RRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIE----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AILE++L RL  L R  I  E N L  +I +   I
Sbjct: 418 ---------------LLTIDEIQANAILEMQLRRLAALERQRIEAEHNELMAKIADYTAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  R   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT++  GY +R
Sbjct: 463 LESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMSIEDLIPEEDVVVTITRGGYTRR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K   LP  +
Sbjct: 523 TRTDLYRSQKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAHELPDTA 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  ++   + E +    Y+V ATK+G +++  L D+     
Sbjct: 583 RDARGQHVANLLAFLPDEKIAQVLDLRDYEQTP---YLVLATKNGLIKKTPLKDYDSPRS 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
           +G IA+ L   DE+++ E  + E+D+LL +K  Q +RF  +  A+R   GR + GV G+ 
Sbjct: 640 AGVIAINLREDDELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPM-GRATSGVIGMR 698

Query: 729 LAKGDQVISMAIV 741
             + D+++SM +V
Sbjct: 699 FREDDELLSMDVV 711



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 77/165 (46%), Gaps = 18/165 (10%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQF 799
           ADY      ++    QRR++S + + I+    D         EG++S    ++L  +E  
Sbjct: 457 ADY---TAILESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMS---IEDLIPEEDV 510

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ +RT +  +R   R GKG++   + + + +      F    +  ++  ++K
Sbjct: 511 VVTITRGGYTRRTRTDLYRSQKRGGKGVKGAQLKQDDIVDHF---FVTTTHHWLLFFTNK 567

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
           G + R   +E+   +R  +G     + +   DE++  V  +R+ E
Sbjct: 568 GRVYRAKAHELPDTARDARGQHVANLLAFLPDEKIAQVLDLRDYE 612


>gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
 gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
          Length = 831

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 361/908 (39%), Positives = 535/908 (58%), Gaps = 100/908 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE  EK + SV + DEM+ SY+ YA++VI GRA+PD+RDGLKPVH+RIL+ M + GV  N
Sbjct: 10  DEVAEK-VKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAMHRSGVTSN 68

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + K + I G+ MG +HPHG+ +IYDALARMAQ +S+R  LI+GQGNFGSVDGDPPAA 
Sbjct: 69  ASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSVDGDPPAAM 128

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+   +  +L D+  DTVDF+PNYDG  +EP VL +  PN+L+NG  GIAVGM+T
Sbjct: 129 RYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSSGIAVGMST 188

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+D  V +IDNPD  ++ LME ++GPDFPTGA I+GR  I  AY TGRG +
Sbjct: 189 NIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIVGRNAIHQAYKTGRGRL 248

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R    ++      ++IV+TE+P+Q NKA ++++IA+ V +  I  I DLRDESDR G 
Sbjct: 249 RVRAEYEVQD-----DRIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLRDESDRDGI 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVV+ELK+ A  +V+ NQL  +  L+  FS+  +AL   +P+  TL  +L+ ++  R +V
Sbjct: 304 RVVVELKQNAIPEVVENQLLNH-RLERTFSIISLALVDGQPKVLTLKELLQHYLDHRRDV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+++ L++A +RAH+L G   A+ N+D+VV +IR + + + AR              
Sbjct: 363 VRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARS------------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                        G  GT   SE Q   I+ ++L  LT L  ++I  E   +   I+   
Sbjct: 410 -------------GLQGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDVTARIERLE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL   S LLG+IK+ELL +K++    RRT+IVE   ++  ED I  ED+ V V+   YV
Sbjct: 457 TILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSEVTREDLIAEEDVFVVVTEQDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+  + AQ RGGKG  G  ++++D V+ +F  +TH  +L F++ G VY+ K + +P 
Sbjct: 517 KRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYRLKTYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            S  ARGK+ +NIL L++GE IT ++    F EDES      +   T+ G V+R    +F
Sbjct: 577 MSRTARGKSAVNILDLDKGEDITAVITTDEFEEDES------LSMVTQQGYVKRTAAKEF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA +L+  D+++ V+      D+L++TK G  +RF  +  R   GR++ GV 
Sbjct: 631 ENILSTGIIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREM-GRSARGVH 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+V+ M   + A+ D D+                                   
Sbjct: 690 GIRLDDDDEVVGM---VAANGDVDD----------------------------------- 711

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LTV+ +G+GKRT   ++R  +R+GKG+   D+   +  G +  + 
Sbjct: 712 --------------LLTVTRRGYGKRTKLTEYRSQSRNGKGL--IDIKTGDRNGHVTEIK 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIV 903
            V ++D ++L+S++G ++R+   +I    R T GV +    +D+RV SV+ I    +E V
Sbjct: 756 TVIEDDHLVLMSERGQIMRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIPAEAAEAV 815

Query: 904 -DEAESTE 910
            D+AE+ E
Sbjct: 816 PDDAETAE 823


>gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190]
 gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 839

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 361/902 (40%), Positives = 520/902 (57%), Gaps = 96/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EMQ SY+ YA++VI+GRA+P + DGLKPVHRR+L+ M + G   ++ YVKCA
Sbjct: 21  IEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSYVKCA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS   DP AA RYTECRL
Sbjct: 81  RVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDPAAAMRYTECRL 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF  NYDG  QEPVVL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 141 SPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSVGIAVGMATNIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G V  ++N +      L+ALM  I GPDFPT  +I+GR GI++AY TGRGSI +R
Sbjct: 201 REVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLIVGRDGIESAYRTGRGSIRMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+ +  R  +VVTE+PYQVN   ++E IA +VR+ ++  IA++ DE SDR G R+
Sbjct: 261 SVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDGKLTGIAEINDESSDRIGMRI 320

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LKR A A V+LN LY++T LQ+ F VNM+A+    P    L  +++ ++  + EV+V
Sbjct: 321 VFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDGVPRTLRLDQVVRNYIRHQIEVIV 380

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR             + L
Sbjct: 381 RRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETVDVAR-------------QGL 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL+D             + ++Q +AIL+++L RL  L R  I +EL  +  EI +  DI
Sbjct: 428 IDLLD-------------VDDIQAQAILDMQLRRLAALERQKIIDELAEIEREIADYQDI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  + D+    RR+R+V    D+ +ED I  ED+VVT++  GY KR
Sbjct: 475 LARPERQRQIVRDELTEIVDKHGDERRSRLVADDGDVTNEDLIAVEDVVVTITETGYAKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +
Sbjct: 535 TKTDLYRAQKRGGKGVQGATLKQDDIVAHFFVCSTHDWMLFFTNKGRVYRLKAYELPEAN 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+L   E I  +M   + +++    Y+V AT+ G V++++L DF     
Sbjct: 595 RNARGQHVANLLALQPDEHIAQVMQIKDYQAAP---YLVLATRSGLVKKSRLEDFDSNRS 651

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G I + L   DE++    C+ ++D+LL +  GQ +RF    +A+R   GR + GV G+ 
Sbjct: 652 GGLIGINLRDEDELVGAVLCSADDDLLLVSAEGQSIRFTADDAALRPM-GRATSGVLGMR 710

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD+++S+ +V       D++   +          +G   + T ++ D  V+G     
Sbjct: 711 FNDGDRLLSIGVV------QDDKFVLVA--------TAGGYAKRTPIE-DYPVQG----- 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                             G G  T  YD R                    G LV    V 
Sbjct: 751 ----------------RGGKGVLTLQYDRR-------------------RGTLVGALIVG 775

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +D++  ++  G +IR    E+R A R TKGV + +   +  + +V R  E    D+A+ 
Sbjct: 776 IDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGDNATLQAVARNAE----DDADD 831

Query: 909 TE 910
           +E
Sbjct: 832 SE 833


>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
 gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 354/880 (40%), Positives = 508/880 (57%), Gaps = 78/880 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K + KCA
Sbjct: 83  VVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCA 142

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR  LI+G GNFGSVD DPPAA RYTECRL
Sbjct: 143 RVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRL 202

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                   L DL +DTVDF PN+D S +EP +   R P +L+NG  GIAVGMAT IP HN
Sbjct: 203 DGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPHN 262

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI +AY +G+G IV+RG +
Sbjct: 263 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIMGNQGILDAYRSGQGRIVVRGKT 322

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +E   +   R  +++ EIPYQ NKA+++EKIAELV +K +  I+D+RDESDR G R+VI
Sbjct: 323 DVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRIVI 382

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA   ++LN LYR T LQS FS NMV +   +P++  L  +L+AF+ FR  VV RR
Sbjct: 383 ELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQAFLDFRCSVVERR 442

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L++A+ R H++ G+   + NLD VV IIR             + S NA    DL +
Sbjct: 443 AMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIR-------------KASSNAIASADLRN 489

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL++ L RLT L       E  SL  +I +  ++LS
Sbjct: 490 -------------EFSLSEKQAEAILDISLRRLTLLEGKKFVEESKSLMEQITKLEELLS 536

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SR  +L +I+QE + +K++   PRR+ + +     +ED D I  E+M++ +S  GYVKR+
Sbjct: 537 SRGNILQLIEQEAVELKNKFSNPRRSMLEDSDSGQLEDIDVIPNEEMLLAISEKGYVKRM 596

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             + +  Q RG  G+S   +RD D ++D  +   H  VL+FS  G VY    +++P  + 
Sbjct: 597 KPNTFNLQNRGTIGKSVGKLRDSDAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTR 656

Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            A G  LI  LSL+ GERIT+I+P   F ED+      +++  T +G +++  L+ F  I
Sbjct: 657 AAAGTPLIQFLSLSDGERITSIIPVSEFVEDQ------FLLMLTVNGYIKKVSLNSFSAI 710

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA++L   DE+  V  CT  + + + ++ G  +      IR   GRN+ G   + 
Sbjct: 711 RSTGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGMVILTSCENIRAL-GRNTRGGVAMR 769

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD++ SM I+                                SL+ D  V    SE 
Sbjct: 770 LREGDKIASMDII------------------------------PASLQKDLEVASKDSEN 799

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPV 847
                K    ++L VSE G GKR     F+ S  +  G+      + + + A+ AV F +
Sbjct: 800 NN---KGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAVFAVGFSL 856

Query: 848 ND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +    ++Q++LVS  GT+ R+ V +I I SR  +GV++ 
Sbjct: 857 TEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILM 896



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ +L +SEKG+ KR     F + NR   G     V K+ +  A+      + +D+++  
Sbjct: 581 EEMLLAISEKGYVKRMKPNTFNLQNR---GTIGKSVGKLRDSDAMSDFIVCHAHDRVLYF 637

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           SD+G +   P  +I   +RA  G   +   S +  ER+ S+  I  SE V++
Sbjct: 638 SDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSI--IPVSEFVED 687


>gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 856

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/733 (42%), Positives = 465/733 (63%), Gaps = 38/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ YVK A
Sbjct: 12  VNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNGYRPDRSYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   + MG +HPHG+ AIYD L RMAQ WS+R  L++GQGNFGS   D PAA RYTECR+
Sbjct: 72  KPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NPD +    L+A M+ ++GPDFPT  +I+G  GI +AY TGRGSI +R
Sbjct: 192 NELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKGIHDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L++++ LQ+ F  NM+++    P    L  +L+ +VA + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP P+ AR  LM           L
Sbjct: 371 RRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGLMS----------L 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E Q  AIL ++L RL  L R  I +EL  + +EI +   I
Sbjct: 421 LD----------------VDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKAI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I++ EL  + ++    RR++I+    D+ +ED I RE++V+T++  GY KR
Sbjct: 465 LASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIARENVVITITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 525 TKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEAS 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669
             ARG+ + N+L    GE+I  ++       S+N+  Y+V AT HG V++++L D+    
Sbjct: 585 RTARGQHVANLLEFQPGEQIAQVIQL----ESYNDFPYLVLATAHGRVKKSRLLDYESAR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
             G IA+ L+  D ++    C +E+D+LL ++ GQ +RF     ++   GR + GV+G+ 
Sbjct: 641 SGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMR 700

Query: 729 LAKGDQVISMAIV 741
               DQ++SM++V
Sbjct: 701 FRDNDQLLSMSVV 713


>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 810

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 351/892 (39%), Positives = 537/892 (60%), Gaps = 90/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E GI  V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRI++GM  +G+  +K Y 
Sbjct: 7   ENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPDKSYR 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A + GEVMGK+HPHG+++IYDA AR+AQD+++R  L++GQGNFG+VDGD PAA RYTE
Sbjct: 67  KSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAPRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ KDTVDF PNYD    EP VL +R+PN+LVNG  GIAVGMATN+  
Sbjct: 127 MRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMATNMAP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE +   +  I+N DI+++ LM+ I+GPDFPTGA+ILG+ GI +AY TGRG I +R 
Sbjct: 187 HNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIILGKQGIIDAYKTGRGKIQVRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD-ESDRQGYRVV 311
            + IE+  G R +IV+TEIPYQVNK  ++ KIA+LV+ K I  I+++RD  S + G ++ 
Sbjct: 247 RAEIEEHKG-RYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTGIKID 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           I+LKR A+ +V+LN LY+ T +Q  F  +N+  +NG +P+   L  I+K +V  +  VV 
Sbjct: 306 IDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNG-EPKVLNLKEIIKYYVDHQRNVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA  RAH++ GL IA+ N+D +++I+R S + + A+ +  +           
Sbjct: 365 RRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFG-------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+++Q +AIL++R+ RLTGL R+ +  E   L   I +   I
Sbjct: 417 ------------------LTDIQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L ++  L   I +EL  +K++    RRT +     D++ ED I  ED+V+T++  GY+KR
Sbjct: 459 LENKKLLDNTIIEELEEIKEKYSDLRRTVLAPDEGDIDSEDLIEEEDVVITLTEFGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y+ QRRGG G S +  R+EDFV D++I STH ++LFF++ G VY  K + +P  S
Sbjct: 519 MPEGTYKPQRRGGTGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIPESS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A+IN+L+L   E +T ++P    + + N   +V ATK+G +++   S+F +I +
Sbjct: 579 RQAKGTAIINLLNLEGDEFVTAVIPVRNVDENAN---LVMATKNGLIKKTSYSEFEKIRK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  D ++ V   +  ++I++ TK G  +RF  S +R   GR ++GV+ I L 
Sbjct: 636 NGLIAITLNEGDNLIGVRLTSGRDEIMIVTKNGMAIRFSESDVRNM-GRTAMGVKSIDLK 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+S  I        D++  Y+  +S                +N       ++E R 
Sbjct: 695 NDDEVVSFEI------PQDDK--YLLVIS----------------ENGFGKMTKMTEYRK 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           Q            +  G G  T    ++ + +SGK               LV+   ++ +
Sbjct: 731 Q------------NRAGVGLLT----YKATEKSGK---------------LVSAKVIDKS 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D+I++++  G +IR+    I +  R T GV + +  KD  VVSV +    EI
Sbjct: 760 DEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNI-KDSEVVSVAKYIGEEI 810


>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
          Length = 917

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 359/894 (40%), Positives = 519/894 (58%), Gaps = 92/894 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++S DE     I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G
Sbjct: 93  VVSGDESR---IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 149

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DP
Sbjct: 150 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 209

Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIA
Sbjct: 210 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 269

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY T
Sbjct: 270 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 329

Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GRG +V+RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RD
Sbjct: 330 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 389

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF
Sbjct: 390 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 449

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR  VV RR ++ L+ A+ R H++ G+ + + N+DEV+ +I  + +  +A   L    
Sbjct: 450 IDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAAL---- 505

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                          S Y         LSE Q  AILE+ L RLT L R    +E +SL 
Sbjct: 506 --------------QSEYG--------LSEKQAEAILEITLRRLTALERKKFTDESSSLT 543

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540
            +I +   +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++
Sbjct: 544 EQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 603

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  GYVKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY 
Sbjct: 604 AVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 663

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
            + +++P  S  A G  L+ ILS+++GER+T+I+P   F ED       Y++  T +G +
Sbjct: 664 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 717

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  F  I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  +
Sbjct: 718 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS 777

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RN+ GV  + L   D++ SM I+                                SL+ 
Sbjct: 778 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 806

Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           D        EE+ ++  L +Q    ++L V E G+GKR     FR S  +  G+    V 
Sbjct: 807 D-------MEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVG 859

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK---GVVIFS 884
             +     + VF    ++Q++LVS  GT+ R+ V +I I SR  +    V +FS
Sbjct: 860 --SGFSPFLVVF---SDEQVVLVSQSGTVNRIKVRDISIQSRRARYSLHVTVFS 908



 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ++ VSEKG+ KR  +  F + +R   G     V K+    A+      + +D ++  
Sbjct: 599 EEMLMAVSEKGYVKRMKADTFNLQHR---GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFF 655

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           SD+G +      +I   SR   G   V I S ++ ERV S+  + E
Sbjct: 656 SDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSE 701


>gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S]
 gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
 gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi]
 gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S]
 gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
          Length = 839

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 329/749 (43%), Positives = 471/749 (62%), Gaps = 39/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +E     I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ ++  DTVDF PNYDG  QEP VL +R PN+LVNG G
Sbjct: 121 GNDGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     +DN + D    L+A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +RGV  IE++     QIV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ +KR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 301 SKIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV++RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVART 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM          DL                + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLM----------DL----------------LTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I+K EL  + ++    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRQIVKDELSEIVEKYGDDRRTRIIAADGDVTDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ ED V + F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTRTDLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I +I+     +S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIQSIIHI---KSYEDAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V++++L+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSRLADF-DSNRSGGIVAINLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+   + D+++S+ +V
Sbjct: 691 LRPM-GRATSGVQGMRFNQDDELLSLNVV 718



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +++  +  G  K++   DF  SNRSG GI A ++   +E   LV     + +D ++LVS 
Sbjct: 623 YLVLATRNGLVKKSRLADFD-SNRSG-GIVAINLRDEDE---LVGAVLCSSDDDLLLVSA 677

Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           KG  IR    +  +R   RAT GV      +D+ ++S+  +RE
Sbjct: 678 KGQSIRFAATDEALRPMGRATSGVQGMRFNQDDELLSLNVVRE 720


>gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 875

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 350/890 (39%), Positives = 515/890 (57%), Gaps = 96/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G    + Y KCA
Sbjct: 26  VDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPERSYNKCA 85

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG+YHPHG+ AIYDAL R+ QDW +R  L  GQGNFGS   D  AA+RYTE ++
Sbjct: 86  RVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPLALGQGNFGSPGNDGAAAQRYTETKM 145

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 146 APLAMEMVRDINENTVDFQDNYDGKNQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNL 205

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + NP+      L  LM  ++GPDFP+GA+ILG  GI +AY TGRGSI +R
Sbjct: 206 REVAEGVQWYLQNPEASREELLAELMLRVKGPDFPSGAMILGTKGISDAYRTGRGSITMR 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PY  N   +  KIAELVR+ +I  IAD+RDE S R G R+
Sbjct: 266 AVVNVEEIQG-RTCLVVTELPYMANPDNLAVKIAELVRDGKISGIADMRDETSGRTGQRL 324

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQS FS NM+A+    P    L G ++ +V  + EV+V
Sbjct: 325 VIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLPLDGFIRHWVTHQIEVIV 384

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA + AH+L GL  A+  LDEV+ +IR S   E AR  LM+          L
Sbjct: 385 RRTEYRLKKAEEEAHILRGLLKALDALDEVIALIRRSATTEAARDGLME----------L 434

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ +D                Q RAIL+++L RL  L R  I++    L   I E   I
Sbjct: 435 LDIDED----------------QARAILDMQLRRLAALERQKIQDRHAELDRMIAEFKAI 478

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           ++  +R   I+ +EL  +  +    RRT+++ G   DM  ED I  E+MVVT++  GYVK
Sbjct: 479 IADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYDGDMSVEDLIPEEEMVVTITRGGYVK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  YR+Q RGGKG  G  +R +D V   F+ STH  +LFF++ G VY+ K + L   
Sbjct: 539 RTRIDNYRSQARGGKGIKGANLRGDDVVEHFFVTSTHNWLLFFTNHGRVYRTKCYELAEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+++    E I  ++      +  +  Y++ AT++G V++ +L D+    
Sbjct: 599 GRDAKGQHVANVMAFQPDEHIAQVLDL---RTYQDAAYLMLATRNGLVKKTRLEDYDTNR 655

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S +  ++ +D++L ++ GQ VRF    +A+R   GR + GV G+
Sbjct: 656 TAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQSVRFTATDTALRPM-GRATSGVTGM 714

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD++++  +V                                  ++DS        
Sbjct: 715 KFREGDELLAADVV----------------------------------RDDS-------- 732

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-EIGALVAVFP 846
                      ++ TV+ +G+ KRT+  ++R+ +R G GI+   V+K+N E G LV    
Sbjct: 733 -----------YVFTVTNEGYAKRTTVAEYRVQSRGGLGIK---VAKLNEERGELVGALI 778

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V++ D++++V   G ++R  V+++    R T GV+     K + +++V +
Sbjct: 779 VDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIFAKPDKKDHIIAVAK 828



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 20/167 (11%)

Query: 746 ADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS-------SVEGNISEERCQELK 794
           A+ D  I   K + A    QR+++S + +EI +   D          +G++S    ++L 
Sbjct: 466 AELDRMIAEFKAIIADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYDGDMS---VEDLI 522

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E+ ++T++  G+ KRT   ++R   R GKGI+  ++   + +      F  + ++ ++
Sbjct: 523 PEEEMVVTITRGGYVKRTRIDNYRSQARGGKGIKGANLRGDDVVEHF---FVTSTHNWLL 579

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
             ++ G + R    E+  A R  KG     + +   DE +  V  +R
Sbjct: 580 FFTNHGRVYRTKCYELAEAGRDAKGQHVANVMAFQPDEHIAQVLDLR 626


>gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1]
 gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1]
 gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3]
 gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1]
 gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3]
 gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2]
 gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1]
          Length = 891

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 353/906 (38%), Positives = 513/906 (56%), Gaps = 90/906 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A          ++ +++
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D                + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M      S     Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL---RSYDGAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
           ++G IA+   +  DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R                                    
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+ T +  G+ KRT+  ++R   R G GI+A  +S+  E G+LV    V
Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLVV 785

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEIV 903
           ++ D+II +   G + R  V+E+    R+T GV   S    + V    V+ E   E E+ 
Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEVA 845

Query: 904 DEAEST 909
            E+  T
Sbjct: 846 YESVET 851



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 532 CIVREDM------VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVS 584
            I+  DM      V T +  GY KR  +S YR Q RGG G   + + +E   +    +VS
Sbjct: 727 SIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVS 786

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESS 642
               ++   + G + +  V  +P     A+G++ + +  +S+  G+ ++ I   PE    
Sbjct: 787 EADEIIAIKTSGQITRSAVSEVP-----AKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVE 841

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
               Y    T  G+  + +         SG +  + D+ D+  +V+T 
Sbjct: 842 EEVAYESVETVEGDATQAQ---------SGGVVRRSDTVDDDRAVDTA 880


>gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231]
 gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002]
 gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19]
          Length = 854

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 346/888 (38%), Positives = 514/888 (57%), Gaps = 93/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 14  IHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RYTECRL
Sbjct: 74  RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG  QEP VL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 134 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NP       L+A M  ++GPDFPT   I+G  GI +AY TGRGSI +R
Sbjct: 194 NELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGSQGINDAYTTGRGSIRMR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G R+ IV+TE+PYQVN   M+  IAE VR+ ++  I+ + DE SDR G R+
Sbjct: 254 GVTSIEE-EGSRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVGMRI 312

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + EV+V
Sbjct: 313 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVTHQIEVIV 372

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L +A  RAH+L GL  A+  LDEV+ +IR S   + AR               L
Sbjct: 373 RRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVAR-------------SGL 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL             + + E+Q  AIL ++L RL  L R  I +EL  + IEI +  DI
Sbjct: 420 IDL-------------LTIDEIQADAILAMQLRRLAALERQKIIDELAEIEIEIADYKDI 466

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  +  +    RRT+I+    D+ +ED I RE++VVT++  GY KR
Sbjct: 467 LAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIARENVVVTITSTGYAKR 526

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 527 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 586

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G V++++LSD+ + NR
Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQL---QSYEDAPYLVLATAQGRVKKSRLSDY-ESNR 642

Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
           SG  IA+ L   D+++    C+ ++++LL ++ GQ +RF     ++   GR + GV+G+ 
Sbjct: 643 SGGLIAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRATAGVKGMR 702

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               DQ+++M +V  +DA                                          
Sbjct: 703 FRGDDQLLAMTVV-RSDA------------------------------------------ 719

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  +  G+GKRTS  ++    R G G+         + G L+A   V+
Sbjct: 720 ----------YLLVATSGGYGKRTSLEEYSQQGRGGLGV--VTFKYTPKRGKLIAAVVVD 767

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R
Sbjct: 768 EDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGVELLAIDR 815


>gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 808

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 344/866 (39%), Positives = 503/866 (58%), Gaps = 86/866 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I DE+ NSY+ Y+++VI+GRAIPDLRDGLKPV RRILFGM ++G+  N+ + K ARI G
Sbjct: 9   NIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKKSARIVG 68

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EVMGK+HPHG+AAIYDAL RMAQ +S+R  L+EGQGNFGS+D DPPAA RYTE R++  A
Sbjct: 69  EVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEARMETLA 128

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL D+ K+TV   PN+DGS  EP VL  + PN+L+NG  GIAVGM T+IP HNL E++
Sbjct: 129 EELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPHNLVEII 188

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D    +I +P+  +  L+  I+GPDFPTG +I+    I + Y  G+G I +R ++ IE+ 
Sbjct: 189 DAISLLIKDPECSVSDLLRHIKGPDFPTGGMIMDAASIPSIYQEGKGRITVRAIAEIEE- 247

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           SG   QIVV+EIPY  +KA ++E+I    +  R + I ++RDESD++G RVVIELKRGA 
Sbjct: 248 SGGSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIELKRGAD 307

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +V+LN L+++T LQ+ FSVNM+ ++  K P    L  IL+ F++ R  V+  +T+Y L 
Sbjct: 308 PNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSKTEYDLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +A  RAH++ GL  A  ++D VV IIR S N E A + LM+                   
Sbjct: 368 QASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLME------------------- 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  T+ +++ Q+ AIL++R+ +LTG+  + + NE   L  +I E   IL+S  ++ 
Sbjct: 409 -------TLEVTQEQSSAILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILASDEKVY 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           GII  EL  +K +    RRTRI  G   D   ED I  ED+V+ V+  GY+K  PL  YR
Sbjct: 462 GIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKSTPLESYR 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGGKG  GV   DEDFV ++   +  +  +  +S G  Y      +   S  ++GK 
Sbjct: 522 KQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSRDSKGKL 581

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L N + ++  E +  ++   ++E     L  V  T+ G +++ +   F+ +  SG  A+ 
Sbjct: 582 LANYIKIDPDENVQAVLSTRKEEVQGKQL--VITTRSGKIKKTEFEAFLNVRISGIKAIS 639

Query: 678 LDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           L+  D ++     ++E+D I+++TK G  +RFP+  +R   GR++ GV GI L K D+V+
Sbjct: 640 LNEGDRVIDASLTSREDDTIIISTKNGMVIRFPLDQVRSM-GRSAAGVMGIRLKKNDEVV 698

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
              IV    A  D R                                             
Sbjct: 699 GANIV----ASEDTR--------------------------------------------- 709

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
             F+LT +EKG GKRT   ++R  NR G G++  ++  + +IG ++    VN +D++IL 
Sbjct: 710 --FLLTATEKGGGKRTCLSEYRSQNRGGLGVK--NIYGLEKIGKVIGTLVVNSDDEVILA 765

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI 882
           +  G  IR+PV+++R   R TKGV I
Sbjct: 766 TKLGMSIRIPVSQVRPTGRVTKGVRI 791



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 4/105 (3%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDIL 697
           +S +  +++ AT+ G  +R  LS++   NR G   K    L+   +++       +++++
Sbjct: 704 ASEDTRFLLTATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLEKIGKVIGTLVVNSDDEVI 763

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           L TKLG  +R P+S +R   GR + GVR + L   D   SMA+V+
Sbjct: 764 LATKLGMSIRIPVSQVRP-TGRVTKGVRIVDLKDNDIAASMAVVV 807


>gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis]
 gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
 gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
          Length = 911

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 335/900 (37%), Positives = 534/900 (59%), Gaps = 91/900 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E  G+   +++  M+ S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +  
Sbjct: 72  DKEINGLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTA 131

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGSVDGD  AA R
Sbjct: 132 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMR 191

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++D + K+TVDF  NYD + +EPVVL +R+PN+LV+G  GIAVGMATN
Sbjct: 192 YTEARMSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATN 251

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D   A+  NP+I++  LME I+ PDFPTG +I  + G+  AY+TGRGSI 
Sbjct: 252 IPPHNLGETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIFNKKGLIEAYSTGRGSIT 311

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  +HI++ S  + +I+VTEIPY+V K  ++EKI+EL+++K+I  IAD RDES+R G R
Sbjct: 312 IRSKAHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIR 371

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+    +++LN L++ T LQS +S NM+AL   +P+   L   L+ ++  + EVV
Sbjct: 372 IVIDIKKSFVPEIVLNNLFKLTKLQSNYSFNMIALVNNEPKLLNLKACLEVYLKHQIEVV 431

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L K R RAH+L GL I + N+D V++II+ S   + A+ +L Q ++N      
Sbjct: 432 SRRLKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQ-AFN------ 484

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+QT+AI++++L RLTGL  + +  ELN +   I   + 
Sbjct: 485 -------------------LSEIQTKAIVDMKLGRLTGLAIEKMNEELNEVHERIANYIK 525

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL   + L+ +I +EL  +K+     RR+ I  + L  +++ED I + D+V+T+++ GY+
Sbjct: 526 ILGDHNLLINLIIEELQEIKNAYGDARRSDINWDELSSIDNEDLIPKRDIVITLTNNGYI 585

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  YR QRRGG G S      +D + D+ + +THT +L F+ L  VY+ +   +P+
Sbjct: 586 KRLDIEEYREQRRGGVGVSTTKTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPV 645

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+ Q++G  ++N++ S+ + E++  I+P  E      N Y++ ATK G V++     F  
Sbjct: 646 GTKQSKGIPIVNVIPSIQKNEKVIKILPINE---YKQNEYLLTATKKGIVKKTPTILFES 702

Query: 668 INRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           INR+GKIA  + D  D+++       E++I +     +  RF  + IR   GR + GV+G
Sbjct: 703 INRNGKIAFAIRDDDDKLIDALIVKDEDEIFIAASNNKICRFDSNEIRSM-GRMAYGVKG 761

Query: 727 ISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I +    D V+S++                                       SS +G  
Sbjct: 762 IKIDDVEDNVVSVS---------------------------------------SSNQG-- 780

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       ++I ++ ++G+GK T +  FR + R   G+ + +  K    G L+   
Sbjct: 781 ------------KYIFSLGKEGYGKLTLAAMFRKTRRGASGVYSLNEEK---SGKLIYAA 825

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEIVD 904
            V+  + +I+++  G  IR  + ++ I  R TKGV + +   +   +V+  +I + ++ D
Sbjct: 826 TVHGVEDLIVLTSDGVAIRFSLKDVAITGRNTKGVKLVNLKGRTTNIVAATKILDDDLED 885


>gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
 gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
          Length = 843

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 322/729 (44%), Positives = 474/729 (65%), Gaps = 30/729 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K Y K A
Sbjct: 9   ITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 129 SKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TGRG+I++R    
Sbjct: 189 SEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTIILRAKVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G RVVI+++
Sbjct: 249 IETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEVV RRT++
Sbjct: 309 RDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEVVRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM                 
Sbjct: 369 DLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            ++Y+        LS  Q +AIL++RL RLTGL R+ + +E   +   I +  DIL+   
Sbjct: 412 -NNYS--------LSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  ELL ++++    RRT ++ G +L +EDED I  ED++VT++H GY+KR+P S
Sbjct: 463 RIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++ Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY+ K + +P  S  A+
Sbjct: 523 EFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDFIQINRSG 672
           G  +IN+L ++ GE I  ++         +N   Y+ F T  G  +R  +++F+ I  +G
Sbjct: 583 GIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG 642

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE+++V       +I++ T  G  + F    +R   GR++ GVRGI L + 
Sbjct: 643 LKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVRGIRLREN 701

Query: 733 DQVISMAIV 741
           D V+  A++
Sbjct: 702 DYVVGSAVL 710



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 37/294 (12%)

Query: 625 NQGERITTIMPFPEDE------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----- 673
           N+G R    M   ED+      S+  +  ++F T  G V R K  +  + +R+ K     
Sbjct: 528 NRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVI 587

Query: 674 IAMKLDSRDEILSVETCTQEND--------ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + +DS + I +V    + N         +  TT  G   R P++    F    S G++
Sbjct: 588 NLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAE---FMNIRSNGLK 644

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGN 784
            I+L  GD+VI++ I      D  + I    H       IS    E+ S+ ++ + V G 
Sbjct: 645 AINLKDGDEVINVVI-----TDGHQNIIIGTHNGYA---ISFKEGEVRSMGRSATGVRGI 696

Query: 785 ISEER----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
              E        +   E  ++ ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G 
Sbjct: 697 RLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GP 754

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           L  +  V  N+ ++L++D+G +IR  V+ +    R+T GV +  T ++ +V ++
Sbjct: 755 LAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATM 808



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR  + +F+  NR G+GI+   V + + I  LV+    + +D ++  ++ 
Sbjct: 507 MVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVS---TSTHDVLLFFTNA 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884
           G + R+   EI   SR  KG+ + +
Sbjct: 564 GKVYRMKGYEIPEYSRTAKGIPVIN 588


>gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180]
 gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180]
          Length = 1386

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 363/808 (44%), Positives = 483/808 (59%), Gaps = 74/808 (9%)

Query: 103  DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
            D     LL  G     SVDGDPPAA RYTE R+ + A  LLDDL K+TVDF PNYD +  
Sbjct: 615  DHHHNFLLACGVFVHNSVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTEH 674

Query: 163  EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
            EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+D C+A+IDNP + LD LMEI+ G
Sbjct: 675  EPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVPG 734

Query: 223  PDFPTGAVILGRTGIKNAYATGRGSIVIRG--VSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            PDFPT  +I G  GI+ AY TGRG  V+R    +  +K SG RE IV+TEIPYQVNKA +
Sbjct: 735  PDFPTAGLINGVRGIREAYRTGRGRCVMRARATTETQKRSG-REAIVITEIPYQVNKARL 793

Query: 281  LEKIAELVREKRIVDIAD--LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            LE+IAELV+EK+I  IA   LRDESD+ G R+VIELKR   ++V+LN LY++T LQ +F 
Sbjct: 794  LERIAELVKEKKIEGIAQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVFG 853

Query: 339  VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            +NMVAL   +P    L  IL+ F+  R +VV RRT Y L KARDRAHVL G AIA+AN+D
Sbjct: 854  INMVALVDGQPLTLNLKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALANID 913

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLS 450
            EV+  I+ + NP  AR  LM+R W    +  +++         ++     G SD    LS
Sbjct: 914  EVIATIKAAANPAEARERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYRLS 973

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
            E Q +AIL+L+L RLTGL +D I  E   +   I   L ILS   RL+ +I++EL++V+D
Sbjct: 974  ERQAKAILDLQLHRLTGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAVRD 1033

Query: 511  ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
            +    RRT I     D+  ED I  ED VVT+SH GYVK  P+S Y+AQ+RGGKG+S   
Sbjct: 1034 QFGDERRTEIQLDQTDLTLEDLIAPEDRVVTLSHQGYVKTQPISDYQAQKRGGKGKSATA 1093

Query: 571  MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +++EDF+  +F+ ++H +VL FSS G VY  KV+ LP     ARG+ ++N+L L  GERI
Sbjct: 1094 IKEEDFIDRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVNLLPLEAGERI 1153

Query: 631  TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
            TT++P  + E   +  +V  AT  G V++  L DF +    G IA+ L   DE+L   T 
Sbjct: 1154 TTLLPVRDYE---DGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDL-REDELLVGATI 1209

Query: 691  TQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            T  E D++L T  G+ VRF  S +R   GR + GVRG+ L +G +V  +A+V   D    
Sbjct: 1210 TGGEQDLMLFTSAGKAVRFSESHVRSM-GRAAHGVRGVMLQEGQRV--IALVAPED---- 1262

Query: 750  ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                             G T                              +L+V+E G+G
Sbjct: 1263 -----------------GGT------------------------------VLSVTENGYG 1275

Query: 810  KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            KRT    F    R  +G+ A D ++ N  GA V    V+  D+I+L++D GTLIR  V++
Sbjct: 1276 KRTDVDQFPTKGRGTQGVIAIDTAERN--GAQVGAILVHPGDEIMLIADDGTLIRTSVDQ 1333

Query: 870  IRIASRATKGVVIFSTAKDERVVSVERI 897
            I +  R TKGV + +  + +R+V VERI
Sbjct: 1334 IPVVGRNTKGVKLINLGEGQRLVFVERI 1361



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 88/110 (80%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  WN+ Y K
Sbjct: 6   KEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNRAYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            AR+ G+VMGKYHPHG+AAIYD + RMAQ +SLR LL++GQGNFG   GD
Sbjct: 66  SARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGD 115


>gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168]
          Length = 853

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 328/894 (36%), Positives = 521/894 (58%), Gaps = 88/894 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+     Y K A
Sbjct: 46  ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 105

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 106 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 165

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T IP HNL
Sbjct: 166 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 225

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +IR  + 
Sbjct: 226 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 285

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K
Sbjct: 286 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 345

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ +R   +
Sbjct: 346 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 405

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L                  
Sbjct: 406 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 449

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   I+ S  
Sbjct: 450 ----------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 499

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK++ L  
Sbjct: 500 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDE 559

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P GS Q +G
Sbjct: 560 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 619

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I ++GKI 
Sbjct: 620 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIG 676

Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +KL   D ++S        D  IL+ +  G   R+ I  +R  +GR ++GV+GI L +G 
Sbjct: 677 LKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 735

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I                C+                                       
Sbjct: 736 KIIGA--------------CFA-------------------------------------- 743

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                FI ++S+KGFGK+T   ++R++ R+ KG+ + D  K    G LV +  + +N + 
Sbjct: 744 -FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNQEA 799

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 800 IITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 843

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 322/729 (44%), Positives = 474/729 (65%), Gaps = 30/729 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K Y K A
Sbjct: 9   ITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG  GIAVGM TNIP HNL
Sbjct: 129 SKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TGRG+I++R    
Sbjct: 189 SEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTIILRAKVD 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G RVVI+++
Sbjct: 249 IETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVR 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEVV RRT++
Sbjct: 309 RDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEVVRRRTEF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM                 
Sbjct: 369 DLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            ++Y+        LS  Q +AIL++RL RLTGL R+ + +E   +   I +  DIL+   
Sbjct: 412 -NNYS--------LSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTE 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R+  II  ELL ++++    RRT ++ G +L +EDED I  ED++VT++H GY+KR+P S
Sbjct: 463 RIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTS 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++ Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY+ K + +P  S  A+
Sbjct: 523 EFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAK 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDFIQINRSG 672
           G  +IN+L ++ GE I  ++         +N   Y+ F T  G  +R  +++F+ I  +G
Sbjct: 583 GIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG 642

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE+++V       +I++ T  G  + F    +R   GR++ GVRGI L + 
Sbjct: 643 LKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVRGIRLREN 701

Query: 733 DQVISMAIV 741
           D V+  A++
Sbjct: 702 DYVVGSAVL 710



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 37/294 (12%)

Query: 625 NQGERITTIMPFPEDE------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----- 673
           N+G R    M   ED+      S+  +  ++F T  G V R K  +  + +R+ K     
Sbjct: 528 NRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVI 587

Query: 674 IAMKLDSRDEILSVETCTQEND--------ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + +DS + I +V    + N         +  TT  G   R P++    F    S G++
Sbjct: 588 NLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAE---FMNIRSNGLK 644

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGN 784
            I+L  GD+VI++ I      D  + I    H       IS    E+ S+ ++ + V G 
Sbjct: 645 AINLKDGDEVINVVIT-----DGHQNIIIGTHNGYA---ISFKEGEVRSMGRSATGVRGI 696

Query: 785 ISEER----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
              E        +   E  ++ ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G 
Sbjct: 697 RLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GP 754

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           L  +  V  N+ ++L++D+G +IR  V+ +    R+T GV +  T ++ +V ++
Sbjct: 755 LAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATM 808



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KR  + +F+  NR G+GI+   V + + I  LV+    + +D ++  ++ 
Sbjct: 507 MVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVS---TSTHDVLLFFTNA 563

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884
           G + R+   EI   SR  KG+ + +
Sbjct: 564 GKVYRMKGYEIPEYSRTAKGIPVIN 588


>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
          Length = 899

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 359/894 (40%), Positives = 519/894 (58%), Gaps = 92/894 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++S DE     I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G
Sbjct: 75  VVSGDESR---IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 131

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DP
Sbjct: 132 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 191

Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIA
Sbjct: 192 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 251

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY T
Sbjct: 252 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 311

Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GRG +V+RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RD
Sbjct: 312 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 371

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF
Sbjct: 372 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 431

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR  VV RR ++ L+ A+ R H++ G+ + + N+DEV+ +I  + +  +A   L    
Sbjct: 432 IDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAAL---- 487

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                          S Y         LSE Q  AILE+ L RLT L R    +E +SL 
Sbjct: 488 --------------QSEYG--------LSEKQAEAILEITLRRLTALERKKFTDESSSLT 525

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540
            +I +   +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++
Sbjct: 526 EQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 585

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  GYVKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY 
Sbjct: 586 AVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 645

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657
            + +++P  S  A G  L+ ILS+++GER+T+I+P   F ED       Y++  T +G +
Sbjct: 646 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 699

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  F  I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  +
Sbjct: 700 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS 759

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RN+ GV  + L   D++ SM I+                                SL+ 
Sbjct: 760 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 788

Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           D        EE+ ++  L +Q    ++L V E G+GKR     FR S  +  G+    V 
Sbjct: 789 D-------MEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVG 841

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK---GVVIFS 884
             +     + VF    ++Q++LVS  GT+ R+ V +I I SR  +    V +FS
Sbjct: 842 --SGFSPFLVVF---SDEQVVLVSQSGTVNRIKVRDISIQSRRARYSLHVTVFS 890



 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ++ VSEKG+ KR  +  F + +R   G     V K+    A+      + +D ++  
Sbjct: 581 EEMLMAVSEKGYVKRMKADTFNLQHR---GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFF 637

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           SD+G +      +I   SR   G   V I S ++ ERV S+  + E
Sbjct: 638 SDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSE 683


>gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 845

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 347/842 (41%), Positives = 504/842 (59%), Gaps = 55/842 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +  + + +   I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPPAPDHDR--IEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 59  FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL +R+PN+LVNGG 
Sbjct: 119 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  ++NP+      L AL+  I+GPDFPT A+ILG +G
Sbjct: 179 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +R V  +E+ +  R  +VV+E+PYQVN   ++E IA LVR+ ++  I
Sbjct: 239 IEDAYRTGRGSVRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGI 298

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DES+ R G R+V+ +KR A A V+LN L+++T LQ  F VNM+AL    P    L 
Sbjct: 299 SDIADESNSRSGMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +V  + +V+VRRT+Y L K  +RAH+L GL  A+  LDEV+ +IR SP+ + AR 
Sbjct: 359 QIIRHYVKHQMDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARP 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM           L+D                + E+Q  AIL+++L RL  L R  I +
Sbjct: 419 ALMT----------LLD----------------IDEIQAVAILDMQLRRLAALERQRIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + IEI +  DIL    R   II+ EL+++ D+    RRT+I+    D+ DE+ I  
Sbjct: 453 ELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDKYGDDRRTKIIGFSGDVTDEELIAV 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+++    E+I  ++     E +    Y+V ATK G
Sbjct: 573 GRVYRTKAYELPEANRNARGQHVANLMAFQPDEQIAQVIQIKNYEVAP---YLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AI 713
            V++ KL+DF      G IA+ L   DE++       E+D+LL +  GQ +RF  +  A+
Sbjct: 630 LVKKTKLTDFDSNRSGGLIAINLREGDELVGAVLAAAEDDLLLVSAEGQSIRFHATDEAL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLIS 766
           R   GR + GV G+    GD+++ +++V       +  D  Y +R   ++    Q R   
Sbjct: 690 RPM-GRPTSGVMGMRFNDGDELLGISVVKEGKFLLVATDGGYSKRTA-IEDYPVQGRGGK 747

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G    + ++++D    G +      +    E  +  ++  G   RT + D R + R  KG
Sbjct: 748 G----VLTIQHDRK-RGRLVGALIVD---AEDELYAITSSGGVIRTPAGDVRKAGRQTKG 799

Query: 827 IR 828
           +R
Sbjct: 800 VR 801


>gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511]
 gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511]
          Length = 838

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 360/884 (40%), Positives = 507/884 (57%), Gaps = 84/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + + +V I DEM+ SY+ YA++VI GRA+P + DGLKPVHRRIL+ M +MGV     + K
Sbjct: 14  RAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAMHEMGVSSGSSHRK 73

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            + I GE MG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+DGDP AA+RYTE 
Sbjct: 74  SSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAQRYTEA 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   +  LL D+ KDTVDF  NYD   QEP VL A +PN+LVNG  GIAVGM+TNIP H
Sbjct: 134 RMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSSGIAVGMSTNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+PD  ++ LM+ ++GPDFPTGA I+GR  I +AY TGRG I +R  
Sbjct: 194 NLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVRAE 253

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+    RE+IVVTE+P+Q NKA ++E+IAE V E  I  I+DLRDESDR G R+VIE
Sbjct: 254 FEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLRDESDRDGVRIVIE 313

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA+ +V+ N+L     L+  F V  +AL   +P   +L   L+ +VA R EVV RR+
Sbjct: 314 LKRGANTEVVKNRLLE-NHLERTFGVINLALVDGQPRVLSLKETLEEYVAHRREVVRRRS 372

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L +A DRAH+L G   AV N D+VV +IR   N ET       RS    +++D  D 
Sbjct: 373 EYDLEEAEDRAHILEGRLTAVENADDVVELIR---NSET-------RSDAKENLQDAYD- 421

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+ Q   I+ ++L  LT +   +I  E   +  EI+    IL S
Sbjct: 422 ---------------FSQDQADHIVRMQLGSLTSMETTEIEEEYEEVQAEIERLNAILES 466

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              LL +IK EL  +K+E    RRT I+E    +  ED I  E++ V ++   YVKR+P+
Sbjct: 467 EEELLSVIKDELRGIKEEYGDERRTSIIEDQGTVTHEDLIPEEEVFVVMTEDDYVKRMPI 526

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +  Q RGGKG  G  +++ D V+ +F  +TH  +L F++ G VY+ K + +P     A
Sbjct: 527 DQFDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTA 586

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK+ +NIL L+ GE IT I+   + ++  +  +V  AT HG V+R    +F  I  +G 
Sbjct: 587 RGKSAVNILDLDPGEDITAIV---DTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGI 643

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA  L+  DE++ VE      D+++ T+ G  +RF    +R   GRN+ GV GI L   D
Sbjct: 644 IAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAM-GRNARGVNGIKLQDDD 702

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V  +     AD                                                
Sbjct: 703 AVAGLVATDEADG----------------------------------------------- 715

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
               Q +LTV+  G+GKRT   ++R  +R GKG+   D+   +  G + AV  V+D+DQ+
Sbjct: 716 ----QALLTVTRNGYGKRTRLSEYRTQSRYGKGL--IDIKTGDRNGPVTAVKAVDDDDQL 769

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++S+ G ++R  V+EI    R T GV++      + V SV+ I
Sbjct: 770 VMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASVDDI 813


>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 809

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 355/883 (40%), Positives = 509/883 (57%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+  ++ + K  
Sbjct: 8   VVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKSG 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R  ++ GQGNFGS+DGDPPAA RYTE +L
Sbjct: 68  RIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAKL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF PNYD S +EP VL A  P +L+NG  GIAVGMATNIP HNL
Sbjct: 128 HKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV     AVIDNP+I    L+  ++GPDFPTG +I G+ GI++AY TG+G +V+R    
Sbjct: 188 GEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRARLS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE IVVTEIPY VNK+++LE++A LVR+K+I  I+++RDESDR G R+V ELK
Sbjct: 248 LETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG    V++N+L+  T LQ+ F VN +AL G KP+  TL  I++ F++ R+EVV RR +Y
Sbjct: 308 RGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRRAQY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DEV+ II+ S   ++AR  LM+R               
Sbjct: 368 DLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL +LT L    I  EL +    I+E  ++L S  
Sbjct: 413 -----------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSER 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L ++K E L +  E    RRT IV E   D++ ED I +EDMVV VS  G +KR+P+S
Sbjct: 462 KILEVVKNETLELAKEYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG  G  +  +D V+ LF+ STH  +LF S+ G  Y  KV  +P GS  ++
Sbjct: 522 AYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQ 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK++ +++ L+  E+++ ++     E+      V   T  G  +R  +         G I
Sbjct: 582 GKSIRSLVQLSPDEQVSAVVSV---ETFEEEREVFMITAKGLAKRLPVPALSNARTRGVI 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+  D ++       + ++++ T+ G  +R      R   GR + GV  + L  GD+
Sbjct: 639 AIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEPGDE 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V                 C                             G +  E  ++L 
Sbjct: 698 V-----------------C-----------------------------GAVPVEEGKDL- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L V+  G+GKR     F    R  KG  A  VS     G L AV  V   D ++
Sbjct: 711 ------LLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSA--RTGELAAVLSVEAKDDVM 762

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +V+ +G +I++ V +I +  R   GV + +  K + VVSV+R+
Sbjct: 763 IVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRV 805


>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 352/870 (40%), Positives = 499/870 (57%), Gaps = 93/870 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  E + SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   K + KCA
Sbjct: 30  IVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLSSKKPFKKCA 89

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR  L+ G GNFGS+DGDP AA RYTECRL
Sbjct: 90  RVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAAAMRYTECRL 149

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q  +   LL DL  DTVDF P +DGS  EP VL AR PNVL+NG  GIAVGMATNIP HN
Sbjct: 150 QGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVGMATNIPPHN 209

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  +A++ NP+  ++ LME + GPDFPTG  ILG  GI +AY  G G + +RG +
Sbjct: 210 LAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQILGTDGILDAYRFGHGRLTVRGKA 269

Query: 255 HIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            IE+     +R  ++++E+PYQ NKAA++EKIA+LV  K +  ++D+RDESDR G R+VI
Sbjct: 270 SIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDESDRFGMRIVI 329

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRGA   V+LN LY+YT+LQ+ FS NMV + G +P+   L   L+ FV FR  V+ RR
Sbjct: 330 EVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGIIGGEPKVMGLKDFLETFVEFRCSVIERR 389

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            K+ L +A DR H++ G+ I ++NLD VV+IIR + +   A  E +Q+ +N         
Sbjct: 390 AKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQA-SEGLQKGFN--------- 439

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           ++  Q  A+L + L RLT L    ++ E ++L  EI +   +L 
Sbjct: 440 ----------------VTPAQADALLAMPLRRLTSLESGKLKEEHDALTAEITDLKQLLE 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+ R+L II++E L +K E  TPRRT + +G   ++ D D I  E+ +VT+S  GY+KR+
Sbjct: 484 SKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGEINDIDVIANEETIVTLSEKGYIKRM 543

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + AQ RG  G+SG  MR  D ++D F+  TH  VLFFS  G VY  + +++P  S 
Sbjct: 544 AAGTFTAQNRGTTGKSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSR 603

Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            + G  L+ ++ +  GERIT++     F ED+      Y+V  T  G ++R  LS F  I
Sbjct: 604 TSAGNPLVQVVPVPPGERITSVQSVSDFAEDQ------YLVMLTTGGYIKRTALSSFASI 657

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G +A++L   DE+  V    +E+ + L ++ G  V       +V  GR + GVR + 
Sbjct: 658 RSTGIVAIQLTPGDELKWVRNAAEEDTVALASQRGMVVCIGCDDDKVL-GRATRGVRAMR 716

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++ +M IV                                            S  
Sbjct: 717 LRGDDKLTAMDIV------------------------------------------PASLV 734

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R    K    ++L V+E GFGKR     F       KG+      ++  IG  V      
Sbjct: 735 RTGTKKTGAPWLLMVTEDGFGKRVPIKAFP------KGV----AGRVGVIGCKVKT-DGE 783

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +Q+++ S+KG L R+ V ++ I SR  K
Sbjct: 784 SEEQVVVGSNKGILNRLRVRDVSIQSRTAK 813


>gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
          Length = 817

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 338/883 (38%), Positives = 514/883 (58%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI  EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M + G+ ++ K  KCA
Sbjct: 12  LIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSGKTRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + G+V+G+YHPHG+A++YDA+ R+ Q +S+R + I+ QGNFG +DG P AA RYTE ++
Sbjct: 72  TVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYRYTEAKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ K+TVDF PN+D + QEP VL A++P +L NG  GIAVGMATN+P HNL
Sbjct: 132 STVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+     A IDNPD+ L+ L  I++GPDFPTG +I GR GIK AY TGRG I+IRG  +
Sbjct: 192 REICSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIFGRRGIKQAYKTGRGKILIRGRFN 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     RE I+ TEIPYQV    + ++I EL R+K I  I  + D S     R+VIELK
Sbjct: 252 IEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVRIVIELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA A V+LNQL+  T+LQS F V  +AL   +PE  TL  +++ FV  R+EVV RRT+Y
Sbjct: 312 RGAIAKVVLNQLFSKTALQSSFGVINLALVKGRPEILTLKDLIRYFVEHRQEVVTRRTRY 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L  L +A+ N+DEV+RIIR S + +TA+  LM+R               
Sbjct: 372 DLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMER--------------- 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          +VQ +AI++++L RLT L  +D+R EL  L   I    D+L+   
Sbjct: 417 -----------FEFDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKDLLAHPE 465

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L +IK+E  S++++    RRT IV   ++  + ED I  E+MV+ +S+LGY+KR+PL+
Sbjct: 466 KILALIKEETESLREKYGDDRRTDIVADEVEQINIEDLIKEEEMVILISNLGYIKRIPLT 525

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+AQ RGGKG +   + ++DF+  +FI STH  ++F ++ G  Y  KV  +P     +R
Sbjct: 526 AYKAQGRGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPEAGRNSR 585

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +  +L+++  E ITT++   E     +  Y+  AT  G V++ + S F      G I
Sbjct: 586 GAHIKGLLTVSPNEEITTVVSLKE---FSDEQYLFMATAAGVVKKVQTSQFSNAKTRGII 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A++LD  D++++       ++++L ++ GQ +R   +++R   GR   GV G+ LA+GD+
Sbjct: 643 AIRLDEGDKLVTAILSGGTDELILISRRGQALRITETSVRPM-GRAGRGVGGLKLAQGDE 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ++ A+ + +DA      C M                                       
Sbjct: 702 -LAGALRVESDA------CMM--------------------------------------- 715

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   ++EKGFGKR    +F    R   G R   VS  ++ G +V      D+D+I+
Sbjct: 716 -------LLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVS--DKTGEIVGTINAADSDEIV 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++ +G  +RV  N +    R+  GV +F+    + V+ ++R+
Sbjct: 767 CITSQGKSLRVAANSVTKQGRSASGVRVFNIDPPDMVIGLDRV 809


>gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
 gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
          Length = 815

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 342/900 (38%), Positives = 522/900 (58%), Gaps = 101/900 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +  
Sbjct: 7   KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RY
Sbjct: 67  TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN+
Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++
Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G R
Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +VV
Sbjct: 307 VVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S +P+TA+  LM+R         
Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                       G D      +VQ +AI++++L RLT L  +D+R EL  L + I    D
Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY+
Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +  
Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  +RG  + ++LS++  E IT ++   E +   +  Y++ AT  G V++    +F   
Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFANA 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+KLD  D+++S      +++I+L T+ GQ +R     IR   GR+S GV GI 
Sbjct: 638 KTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTGIK 696

Query: 729 LAKGDQVI-------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L+  D++        +  +++  +  Y +R+ +    SA  R   G              
Sbjct: 697 LSSEDELTGALRVTENQKMLVMTENGYGKRVEF-SEFSAHGRGTGG-------------- 741

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           Q I T+SEK                                G +
Sbjct: 742 ----------------QRIYTLSEK-------------------------------TGEV 754

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V +  V D+D+++ ++ +G  IR+ V+ +    R+ +GV I      + ++ ++ +   E
Sbjct: 755 VGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDE 814


>gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 879

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 356/901 (39%), Positives = 512/901 (56%), Gaps = 96/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KCA
Sbjct: 30  IEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRAFNKCA 89

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 90  RVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKM 149

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 150 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNL 209

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    + NP+      L ALME I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 210 REVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGRGSITMR 269

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIA+L++E ++  I+DLRDE S R G R+
Sbjct: 270 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQRL 328

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A   V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  + +V+V
Sbjct: 329 VIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNHQMDVIV 388

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM          D 
Sbjct: 389 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM----------DF 438

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E Q +AIL ++L RL  L R  I++  + L   I E   I
Sbjct: 439 LD----------------IDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLISEYNAI 482

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549
           ++S  R   II +EL  + +     RRT I+ G   DM  ED I  E++VVT++  GY+K
Sbjct: 483 IASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTITRGGYIK 542

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K + L   
Sbjct: 543 RTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQEA 602

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ L N+L     E I  +M     E +    Y+V ATK G V++++LSD+    
Sbjct: 603 GRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAE---YLVLATKGGLVKKSRLSDYDTNR 659

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S    + E+DILL ++ G  +RF  +  ++R   GR++ GV G+
Sbjct: 660 TAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRSTSGVTGM 718

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               GD++IS  +V+                                             
Sbjct: 719 KFRDGDELISAQVVI--------------------------------------------- 733

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFP 846
                    E F+  V+E G+ KRT    +R+  R+G GI+   V+K+ E  GALV    
Sbjct: 734 --------PESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIK---VAKLVEGRGALVGGLI 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V++ND++++V   G ++R  V+E+    R T GV+     K + ++ + R ++ ++ ++ 
Sbjct: 783 VSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQK 842

Query: 907 E 907
           E
Sbjct: 843 E 843


>gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 922

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 356/908 (39%), Positives = 520/908 (57%), Gaps = 112/908 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 42  IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 101

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR+
Sbjct: 102 RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 161

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 162 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 221

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +D+P+      L+ L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 222 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 281

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 282 AVVNTEEING-RLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQRL 340

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   VILN LY++T LQ  F  NM+AL    P   +L   ++ +++ + EVV 
Sbjct: 341 VLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVVD 400

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKYL  +A +R H+L G   A+  ++EV+ +IR SP+ + AR  LM          DL
Sbjct: 401 RRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------DL 450

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L RL  L R  I +E   L  +I +  DI
Sbjct: 451 LD----------------VDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDI 494

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  E+  + D+    RRTRI+    +M  ED I  E++VVTV+H GY+KR
Sbjct: 495 LAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIKR 554

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P GS
Sbjct: 555 TKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGS 614

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G+ + N+L L   E+I  ++   + DE+     Y+V AT+ G +++ +L+++    
Sbjct: 615 RDSKGQHVANLLQLGPDEKIQQVLSIHDYDEAK----YLVLATRSGKIKKTRLNEYDSTR 670

Query: 670 RSGKIAMKL---------DSR-------DEILSVETCTQENDILLTTKLGQCVRFPI--S 711
           + G IA++L         D         DE++    C  E++I++ ++ G  V+F     
Sbjct: 671 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 730

Query: 712 AIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +R   GR + GV+ +     A  D ++SM +V  A++D D                   
Sbjct: 731 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVV-PAESDSD------------------- 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          ++ V+ +GF KRT+  ++R+  R+G G++
Sbjct: 770 -------------------------------LVVVTNEGFAKRTALSEYRLQGRNGYGVK 798

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++  +   G+LV    V+++DQI+ +   G +IR  V EI+   R T+GV +    K 
Sbjct: 799 AINL--VEGRGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 856

Query: 889 ERVVSVER 896
           + ++S+ R
Sbjct: 857 DEIISIAR 864



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802
           ADY++ +   +    QR ++  + +EI     D   + +     E   ++L  +E  ++T
Sbjct: 489 ADYNDILAKPER---QRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVT 545

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+  G+ KRT + ++R  +R GKGI+ T   ++ E   +   F  + ++ ++  +++G +
Sbjct: 546 VTHSGYIKRTKADEYRAQHRGGKGIKGT---RLREDDVVDHFFLTSTHNWLLFFTNEGRV 602

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907
            R+   E+   SR +KG     +     DE++  V  I +    DEA+
Sbjct: 603 YRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHD---YDEAK 647


>gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20]
          Length = 893

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 360/912 (39%), Positives = 515/912 (56%), Gaps = 104/912 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K +
Sbjct: 23  IQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSKSS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC++
Sbjct: 83  RIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 143 APLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R
Sbjct: 203 REVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+
Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L G ++ +VA + +V+V
Sbjct: 322 VIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVAHQIDVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L KA +R H+L GL  A+  LD V+ +IR SP  E AR  LM            
Sbjct: 382 RRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM------------ 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E Q  AIL L+L RL  L R  I+ E   L   +K+  +I
Sbjct: 430 --------------GLLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  ED+VVT++  GY KR
Sbjct: 476 IASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYAKR 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP G 
Sbjct: 536 TRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGG 595

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G+ + N+L+   GE I  +M   + D++     Y+V AT+ G V++ +LS++    
Sbjct: 596 RDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD----YLVLATRRGLVKKTRLSEYNSNR 651

Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
             G IA+ L      + DE++S    +   D+LL ++ GQ +RF      +R   GR + 
Sbjct: 652 SGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRP-TGRATS 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   + D +++M +V  +  D D                                 
Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840
                            +  V+E G+ KRT+  D+ +  R G G++  ++  ++ N +GA
Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899
           LV     +  D+++ +   G ++R  V E+    R T+GV        +R+++V R  E 
Sbjct: 781 LV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARSTER 836

Query: 900 --SEIVDEAEST 909
              E VD A+S 
Sbjct: 837 DMEEAVDAADSA 848


>gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
          Length = 911

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 356/908 (39%), Positives = 520/908 (57%), Gaps = 112/908 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 31  IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 90

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR+
Sbjct: 91  RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 150

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 151 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 210

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +D+P+      L+ L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 211 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 270

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 271 AVVNTEEING-RLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQRL 329

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   VILN LY++T LQ  F  NM+AL    P   +L   ++ +++ + EVV 
Sbjct: 330 VLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVVD 389

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKYL  +A +R H+L G   A+  ++EV+ +IR SP+ + AR  LM          DL
Sbjct: 390 RRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------DL 439

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + +VQ  AIL ++L RL  L R  I +E   L  +I +  DI
Sbjct: 440 LD----------------VDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDI 483

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  E+  + D+    RRTRI+    +M  ED I  E++VVTV+H GY+KR
Sbjct: 484 LAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIKR 543

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P GS
Sbjct: 544 TKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGS 603

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G+ + N+L L   E+I  ++   + DE+     Y+V AT+ G +++ +L+++    
Sbjct: 604 RDSKGQHVANLLQLGPDEKIQQVLSIHDYDEAK----YLVLATRSGKIKKTRLNEYDSTR 659

Query: 670 RSGKIAMKL---------DSR-------DEILSVETCTQENDILLTTKLGQCVRFPI--S 711
           + G IA++L         D         DE++    C  E++I++ ++ G  V+F     
Sbjct: 660 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 719

Query: 712 AIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +R   GR + GV+ +     A  D ++SM +V  A++D D                   
Sbjct: 720 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVV-PAESDSD------------------- 758

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          ++ V+ +GF KRT+  ++R+  R+G G++
Sbjct: 759 -------------------------------LVVVTNEGFAKRTALSEYRLQGRNGYGVK 787

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++  +   G+LV    V+++DQI+ +   G +IR  V EI+   R T+GV +    K 
Sbjct: 788 AINL--VEGRGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 845

Query: 889 ERVVSVER 896
           + ++S+ R
Sbjct: 846 DEIISIAR 853



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802
           ADY++ +   +    QR ++  + +EI     D   + +     E   ++L  +E  ++T
Sbjct: 478 ADYNDILAKPER---QRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVT 534

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+  G+ KRT + ++R  +R GKGI+ T   ++ E   +   F  + ++ ++  +++G +
Sbjct: 535 VTHSGYIKRTKADEYRAQHRGGKGIKGT---RLREDDVVDHFFLTSTHNWLLFFTNEGRV 591

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907
            R+   E+   SR +KG     +     DE++  V  I +    DEA+
Sbjct: 592 YRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHD---YDEAK 636


>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
 gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
          Length = 815

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 320/720 (44%), Positives = 451/720 (62%), Gaps = 30/720 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I +  +  +M+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y
Sbjct: 4   KEGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD+  RMAQD+S+R  L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K    +L D+ KDTVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN+P
Sbjct: 124 EMRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G  A+IDNP+I +D LM+ I+GPDFPT A+I G  GI++ Y TGRGSI +R
Sbjct: 184 PHNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAIIQGHKGIEDTYRTGRGSITVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE+    + +I+VTE+PYQVNKA ++E IA+L R+K I  I  LRDESDR G R+V
Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN LY++T +Q  F   M+AL    P    L  IL  ++  +EEV+ R
Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGHPRILNLKQILYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA  +AH+L GL IA+ ++DEV+R IR S   E A+  L+ +           
Sbjct: 364 RSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL++RL RLTGL RD I  +   +   I    D+L
Sbjct: 413 ---------------FGLSEKQAVAILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SSR +++G++K EL   K+     RRT I   L DM+  D I  + M +T++   Y+KR+
Sbjct: 458 SSREKIMGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITLTKQNYIKRI 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R Q++GG+G SG+ M+D D+V  +   STH  +LFF++ G VY +  + +P  S 
Sbjct: 518 DSSDLRTQKKGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSR 577

Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            ARG A+IN I SL   E +T ++    D S     Y++  TK+G +++  L ++  IN+
Sbjct: 578 TARGSAMINFITSLGADEHVTELLDL--DISEEGTKYLLMVTKYGYIKKTALEEYKNINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IAM+L   D +++V       +I++ T+ G  +RF I    V    R++ GV G+ L
Sbjct: 636 NGLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRL 695



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           I T+S  G  KR ++  +R+  R+G+G    +  K  E+ ALVA    +D D+++ +S++
Sbjct: 712 IFTISADGNAKRNAASAYRLQGRNGQG--TINFKKGYEVVALVAA---DDRDELVGISEQ 766

Query: 860 GTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901
           G  IR+P ++I    ++  +GV++    + +R+ S++ + E E
Sbjct: 767 GITIRIPADQISSKKAKGGQGVILQRLEEGDRIASIDVVSEPE 809



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 20/116 (17%)

Query: 772 ITSLKNDSSV----EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK-G 826
           ITSL  D  V    + +ISEE  +       ++L V++ G+ K+T+  +++  N++G   
Sbjct: 588 ITSLGADEHVTELLDLDISEEGTK-------YLLMVTKYGYIKKTALEEYKNINKNGLIA 640

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGV 880
           +R  D  +      LVAV PV  N++II+ + KG  IR  +++  +R  SR+  GV
Sbjct: 641 MRLKDEDR------LVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGV 690


>gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 893

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/933 (39%), Positives = 526/933 (56%), Gaps = 117/933 (12%)

Query: 8   SDEEEE----KGITSVSITD---------EMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           SDE EE    +G TS+++ +         EMQ SYL YA++VI+GRA+PD+RDGLKPVHR
Sbjct: 2   SDEVEEIIGDEGATSIAVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHR 61

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G      + K +R+ G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ GQ
Sbjct: 62  RVLYAMYDGGYRPTASFSKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQ 121

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN+
Sbjct: 122 GNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNL 181

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAV 230
           LVNG  GIAVGMAT IP HNL EV  G    +++PD      LDAL+E I GPDFPTGA 
Sbjct: 182 LVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGAT 241

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR GI++AY TGRGSI  R V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+
Sbjct: 242 ILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRD 300

Query: 291 KRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
            ++  IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    P
Sbjct: 301 GQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVP 360

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
              +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP 
Sbjct: 361 RTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPT 420

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            E AR  LM                          G + + E Q  AIL L+L RL  L 
Sbjct: 421 TEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAALE 454

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
           R  I+ E + L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M  
Sbjct: 455 RLKIQEESDELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSM 514

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  +
Sbjct: 515 EDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWL 574

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYV 648
           LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + D++     ++
Sbjct: 575 LFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELRDYDQAD----FL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L      + DE++S    +   D+LL +  G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690

Query: 704 QCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF      +R   GR + GV G+   +GD +++M +V  +  D D            
Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREGDYLLAMDVVDPSWQDAD------------ 737

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +  V+E G+ KRT+  D+ +  
Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759

Query: 822 RSGKGIRATDV--SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           R G G++  ++  ++ N +GALV     +  D+++ +   G ++R  V E+    R T+G
Sbjct: 760 RGGLGVKVANLVEARGNLVGALV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQG 815

Query: 880 VVIFSTAKDERVVSVERIRE---SEIVDEAEST 909
           V        +R+++V R  E    E VD A+S 
Sbjct: 816 VTFAKPDAGDRIIAVARNTERDMEEAVDAADSA 848


>gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152]
 gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152]
          Length = 836

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 328/734 (44%), Positives = 462/734 (62%), Gaps = 39/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EMQNSY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK A
Sbjct: 15  VEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPDRGYVKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG YHPHG++AIYD L RMAQ W++R  L++GQGNFGS   D  AA RYTECRL
Sbjct: 75  RPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTECRL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L ++  +TVDF PNYDG  QEPVVL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 135 TPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +     +DN D D    L A ME I+GPDFPT  +I+G  GI +AY TGRGSI +R
Sbjct: 195 TELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGTQGIHDAYTTGRGSIKMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV  IE+ +  R  IV+TE+PYQVN    +  IAE V++ +I  IAD+ DE SDR G R+
Sbjct: 255 GVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGIADIHDESSDRVGLRI 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  + +V++
Sbjct: 315 VVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRLYVNHQLDVII 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S N +TAR  LM+          L
Sbjct: 375 RRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTARTGLME----------L 424

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q  AIL+++L RL+ L R  I ++L  +  EI +  DI
Sbjct: 425 LD----------------IDEIQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L    R   I++ EL  + ++    RRT+IV    D+ DED I RED+VVT++  GY KR
Sbjct: 469 LDKPERQRAIVRDELAEIVEKYGDERRTQIVSADGDVADEDLIAREDVVVTITETGYAKR 528

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEAN 588

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+     E +    Y+V ATK+G V++++LSDF   NR
Sbjct: 589 RTARGQHVANLLAFQPDEKIAQIIQIKTYEDAP---YLVLATKNGLVKKSRLSDF-DSNR 644

Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
           SG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A+R   GR + GV+G+
Sbjct: 645 SGGIVAVNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPM-GRATSGVQGM 703

Query: 728 SLAKGDQVISMAIV 741
                D+++S+ +V
Sbjct: 704 RFNAEDELLSLNVV 717


>gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247]
 gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247]
          Length = 827

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/904 (39%), Positives = 521/904 (57%), Gaps = 95/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +     E   +  V +  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+  
Sbjct: 1   MTDTTLPPAGGEGDRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   E MG YHPHG+ AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  YDAGFRPDRSYVKSAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  +L D+ ++TVDF PNYDG   EP VL AR PN+L+NG G
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D  +  +++PD D    L A ME I+GPDFPT A+I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE+  G    +VVTE+PYQVN   +++ IAE V E ++  I
Sbjct: 241 IRDAYTTGRGSIRMRSVVDIEENKG-TTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ L+R A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SRIEDQSSDRVGMRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S N E AR 
Sbjct: 360 QMIRYYVAHQIDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM          DL++                + E+Q  AIL ++L RL+ L R  I +
Sbjct: 420 GLM----------DLLE----------------IDEIQADAILAMQLRRLSALERQKIVD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I++ EL  V D+    RRT+I+    D+ DED I R
Sbjct: 454 ELAEIEREIADLQDILAKPERQRAIVRDELKVVVDKYGDDRRTKIIAADGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQRRGGKGVQGAGLKQDDIVKHFFVSSTHDWILFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIQL---KSYQDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SA 712
            V+++KL DF   NRSG I A+ L   DE++  + C+ ++D+LL ++ GQ +RF     A
Sbjct: 631 LVKKSKLEDF-DSNRSGGIAAINLRGEDELVGAQLCSADDDLLLVSQKGQSIRFHADDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D ++S+ +V            Y+   +      SG   + 
Sbjct: 690 LRPM-GRQTSGVQGMRFNADDTLLSLNVVREG--------TYLLVAT------SGGYAKR 734

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T + +D  V+G                       G G  T ++D     R G+ I     
Sbjct: 735 TGM-DDYPVQG---------------------RGGKGVLTIAHD----RRRGELI----- 763

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 GAL+    V+D+ ++  ++  G +IR    ++R A R TKGV + +  +   V+
Sbjct: 764 ------GALI----VDDDSELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNIDEGTTVI 813

Query: 893 SVER 896
           ++ R
Sbjct: 814 AIAR 817


>gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894]
 gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 856

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 362/918 (39%), Positives = 522/918 (56%), Gaps = 112/918 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KCA
Sbjct: 20  VEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFSKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYDA+ R+ QDWSLR  L+ GQGNFGS   DP AA RYTECR+
Sbjct: 80  RVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYTECRM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF+ NYDG  QEPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 140 APIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    + +P+      L ALM+ ++GPDFPTGA ILG  GI+ AY TGRGSI +R
Sbjct: 200 REVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQILGTKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+   +R  +VVTE+PYQVN   +  KIA+LV + R+  IAD+RDE S R G R+
Sbjct: 260 AVVNVEEIQ-NRICLVVTELPYQVNPDNLAAKIADLVNDGRLQGIADIRDETSGRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+AL    P   +L   ++ +   + EV+ 
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRTLSLDAFIRHWTTHQMEVIR 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT YLL  A  R H+L G   A+  LD+V+ +IR SP+ + AR  LM+           
Sbjct: 379 RRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDADQARAGLME----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL L+L RL  L R  I +E  ++  EI +  DI
Sbjct: 428 ---------------LLEIDEIQANAILNLQLRRLAALERQRIIDEHAAIEAEITDLQDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+ +EL  + ++    RRT I+    DM  ED I  E++VVT++  GY KR
Sbjct: 473 LAKPERQRSIVGEELDGIVEKYGDERRTHILPYDGDMSMEDLIPEEEVVVTITRGGYAKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP GS
Sbjct: 533 TRSDAYRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNFGRVYRAKGYELPEGS 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L+   GE I  ++   + +++    Y+V AT+ G V++ +L ++     
Sbjct: 593 RDSKGQHVANMLAFQPGEHIAQVLDLRDYDAAE---YLVLATRRGLVKKTRLQEYNSPRS 649

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
           +G IA+ L        DE++         D++L ++ GQ +RFP +  ++R   GR + G
Sbjct: 650 AGLIAINLREDEDGQPDELIGAMLVDSSQDLILVSRKGQSIRFPAADESLRPL-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+   +GD+V++ A V+  DA                                     
Sbjct: 709 VTGMKFREGDEVLTAA-VVREDA------------------------------------- 730

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRT--SSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          F+ TV+E G  KRT  S  ++R   R G GIR  ++ +  E G L
Sbjct: 731 ---------------FLFTVTESGLAKRTELSVDNYRQQGRGGLGIRVANLPE--ERGDL 773

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER----- 896
           V    V+D+D+++++ ++G ++R  V E+R   R T+GV      K +R+++V R     
Sbjct: 774 VGALVVDDDDEVLVIMERGKIVRSAVAEVRATGRTTQGVTFAKPDKGDRIIAVARNVERR 833

Query: 897 -------IRESEIVDEAE 907
                  + ES  VDEA+
Sbjct: 834 EEEESASVDESVPVDEAD 851


>gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 860

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 353/913 (38%), Positives = 512/913 (56%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E+    I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+ 
Sbjct: 61  YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
               PAA RYTEC++   A  ++ D+ +++VDF+ NYDG  QEP +L AR+PN+LVNG  
Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV  G    +++PD      L+AL+E I GPDFPTGA ILGR G
Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATILGRRG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI  R V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+ ++  I
Sbjct: 241 IEDAYRTGRGSITQRAVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L 
Sbjct: 300 ADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V  + +V+VRR+++ L KA++R H+L G   A+  LD V+ +IR S   + AR 
Sbjct: 360 GFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEARG 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                          G + + EVQ  AIL L+L RL  L R  I+ 
Sbjct: 420 GLM--------------------------GLLGVDEVQADAILALQLRRLAALERLKIQQ 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++ +  DI++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  
Sbjct: 454 EAEELQAKVADLKDIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPE 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++L
Sbjct: 514 EEVVVTITRSGYAKRTRTDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNL 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   A+G+ + N+L+   GE I  +M   + E +    ++V ATK G
Sbjct: 574 GRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEEIAQVMELKDYEQA---DFLVLATKRG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +LS++      G IA+ L      + DE++S    ++  D+LL ++ GQ  RF  
Sbjct: 631 LVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHA 690

Query: 711 S-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S  +    GR + GV G+    GD +++M +V     D D                    
Sbjct: 691 SDDVLRPTGRATSGVTGMRFRDGDWLLAMDVVDPQWTDAD-------------------- 730

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +  V+E G+ KRT+  ++    R G G++ 
Sbjct: 731 ------------------------------LFVVTEGGYAKRTNVAEYPTKGRGGLGVKV 760

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++  + E G LV       +D+++ + + G ++R  V+E+ +  R T+GV        +
Sbjct: 761 ANL--VEERGDLVGALVTAPSDEVLCIMESGKVVRSRVDEVSVTGRNTQGVTFAKPDDGD 818

Query: 890 RVVSVERIRESEI 902
           R+++V R  E E+
Sbjct: 819 RIIAVARNTEREL 831



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++S +  EI     D         +G +S E   +L  +E+ ++T++  G+ KRT +
Sbjct: 475 QRGIVSDELAEIVEKYGDERRTRIVPFDGEMSME---DLIPEEEVVVTITRSGYAKRTRT 531

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R  +R GKG++    + + E   +   F    +  ++  ++ G + R    E+    
Sbjct: 532 DAYRSQHRGGKGVKG---AALREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGG 588

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           R  KG     + +    E +  V  +++ E  D
Sbjct: 589 RDAKGQHVANLLAFQPGEEIAQVMELKDYEQAD 621


>gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
 gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
          Length = 970

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 361/909 (39%), Positives = 518/909 (56%), Gaps = 82/909 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VS+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  W+    K A
Sbjct: 73  LLPVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVWSSPTKKAA 132

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A Y  + RMAQD+S+R  LI GQGNFGS+DGD  AA RYTE +L
Sbjct: 133 RVVGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAAMRYTEVKL 192

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L DL +DTVDF PN+D S  EPVVL  R P +LVNG  GIAVGMATNIP HNL
Sbjct: 193 MKIAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMATNIPPHNL 252

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E +D CV  +++PD  +D L+ +I  PDFPTG ++ G +G+   Y TGRG +++R  +H
Sbjct: 253 RETIDACVHALEHPDCSVDDLIALISAPDFPTGGIVYGLSGVYEGYRTGRGRVIMRARTH 312

Query: 256 IEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +E+   D  R +IVV EIPY VNK  + E++ EL R+K++  I+++RDES RQ  R+ I+
Sbjct: 313 LEEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTRQ-IRIAID 371

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  +V+LN L++ T +Q  F +NMVAL   +P    L  ++  F+  R EVV RRT
Sbjct: 372 LKQGAMPEVVLNNLFKNTQMQESFGMNMVALVDGQPMLLNLKQMVVYFLEHRREVVTRRT 431

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN---ASDI--- 427
            + L K+R   H+L G AIA+AN+DE +R+IR +   E A++ LM R W    A++I   
Sbjct: 432 IFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLGFAAEITRR 491

Query: 428 -----KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                KD      D    +  DG  YL++VQ   IL + L RLTGL R+ I  +  +   
Sbjct: 492 AAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKILADYAATME 551

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVT 541
            I + +DIL    R+  IIK+ELL+ ++     RR+ I +    +    D I R DMVV+
Sbjct: 552 RIFDLIDILHKPERVTAIIKEELLACREAYGDERRSTIDLSEDTNFNKRDLIPRRDMVVS 611

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  G+VK   L+ Y AQ RGGKGR+      +D +   F+ +TH  +L FS+ G VY  
Sbjct: 612 LTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFSTAGQVYAI 671

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658
            V+ LP G   +RG+ ++N+L L + E+I+ I+P   F ED       Y+  AT  G VR
Sbjct: 672 DVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQEFSEDR------YMFLATDRGTVR 725

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  LS F    R G  A  L   ++++ V   + ++D+ L    G+CV F  S IRV  G
Sbjct: 726 RTPLSAFSSARR-GIRATNLGD-EKLVGVTITSGDDDVFLLADNGRCVHFKESTIRVM-G 782

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ +   + V+++A                             T ++T     
Sbjct: 783 RTAHGVRGMRVKADESVVALA----------------------------STNDMT----- 809

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                              Q  L  +E GFGKRT+   + + NR GKG+ A  V + N  
Sbjct: 810 -------------------QAFLIATEHGFGKRTALAAYPLRNRGGKGVIAIRVIEKN-- 848

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           GA V+   V   D I+L+S  G ++R    E+    R T G ++     D+ + +V R+ 
Sbjct: 849 GAPVSGVIVKPEDDIMLLSTGGKVVRTRAGEVPERGRNTVGNILIRMP-DDTLAAVRRVD 907

Query: 899 ESEIVDEAE 907
            +   DE+E
Sbjct: 908 RTGEEDESE 916


>gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 893

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 360/912 (39%), Positives = 515/912 (56%), Gaps = 104/912 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K +
Sbjct: 23  IQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSKSS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC++
Sbjct: 83  RIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 143 APLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R
Sbjct: 203 REVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+
Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L G ++ +VA + +V+V
Sbjct: 322 VIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVAHQIDVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L KA +R H+L GL  A+  LD V+ +IR SP  E AR  LM            
Sbjct: 382 RRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM------------ 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E Q  AIL L+L RL  L R  I+ E   L   +K+  +I
Sbjct: 430 --------------GLLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  ED+VVT++  GY KR
Sbjct: 476 IASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYAKR 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP G 
Sbjct: 536 TRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGG 595

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G+ + N+L+   GE I  +M   + D++     Y+V AT+ G V++ +LS++    
Sbjct: 596 RDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD----YLVLATRRGLVKKTRLSEYNSNR 651

Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
             G IA+ L      + DE++S    +   D+LL ++ GQ +RF      +R   GR + 
Sbjct: 652 SGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRP-TGRATS 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   + D +++M +V  +  D D                                 
Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840
                            +  V+E G+ KRT+  D+ +  R G G++  ++  ++ N +GA
Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899
           LV     +  D+++ +   G ++R  V E+    R T+GV        +R+++V R  E 
Sbjct: 781 LV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARNTER 836

Query: 900 --SEIVDEAEST 909
              E VD A+S 
Sbjct: 837 DMEEAVDAADSA 848


>gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH]
          Length = 839

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 334/902 (37%), Positives = 524/902 (58%), Gaps = 88/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++
Sbjct: 14  ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R
Sbjct: 74  PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ KDTVDF  NYDG  QEP VL A +PN+L NG  GIAVGM+T+
Sbjct: 134 YTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTS 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP+HNL E++ G + +IDNPD  ++ L+ +I+GPDFPTGA I+   GI++ + TG+G++V
Sbjct: 194 IPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVV 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+    R  +VVTEIPY VNK +++EKI ELV+ + I  IAD+RDES R+G R
Sbjct: 254 IRSKVSIEQLP-TRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P+   +   L  ++  + +V+
Sbjct: 313 LVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+T++ L K ++R H+L GL IA  N+DEV+ II+ S N + A   L +R         
Sbjct: 373 IRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L E+Q RA+L++RL  L+ L  + ++ E   L   I+ C  
Sbjct: 424 -----------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQ 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           +L+ +   L +IK++L  + ++   PRR+ I+ G+  D++DED I +E++V+T+S  GY+
Sbjct: 467 VLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYL 526

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P 
Sbjct: 527 KRIGVDSYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPP 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G    +G   +N++ +++ E+I  ++      + + N Y  F TK+G ++R  LS+F  I
Sbjct: 587 GFRTNKGIPAVNLIKIDKDEKICALISV----NDYQNGYFFFCTKNGTIKRTSLSEFANI 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              GK A+     D + SV   + ++DI + +  G  VRF    +R  + R ++GV GI+
Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGIN 701

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +G+ V                                         N  S   N S  
Sbjct: 702 LNQGEFV-----------------------------------------NGLSTSSNGS-- 718

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+V + G GK TS   +R++ R+ KG++   V+   + G +V    V 
Sbjct: 719 ----------LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTVF 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            N+ ++++S  G ++R+ + ++    + T GV +    + ER+ +V   ++ E +    +
Sbjct: 767 GNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTA 826

Query: 909 TE 910
           TE
Sbjct: 827 TE 828


>gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 820

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 325/890 (36%), Positives = 521/890 (58%), Gaps = 84/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Q+G+  N  Y
Sbjct: 3   EGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y+ + R+AQ W+LR  LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+++ +  +L D+ K+TVD + N+D S +EP VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 123 EVRMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL E ++   A IDN + + ++ +M+ ++ PDFPTG +I G  G+KNA+ TG+G IV+
Sbjct: 183 PHNLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIYGYDGVKNAFHTGKGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E+  G R+ I+V EIPYQVNK+ M+ +   L++E ++  I  +RDESDR G R+
Sbjct: 243 RAKVHFEEIQG-RQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LK+  + +++LN+L++YT LQ+ F+VN +AL   KP +  +  +++ FV  R +V++
Sbjct: 302 VYILKQNTNPNILLNKLFQYTPLQTSFNVNNIALVNGKPLQLNIKDMIQHFVDHRHDVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+KY L K ++R H+L+G    + +LD ++++I+ S N   A   L+++          
Sbjct: 362 RRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q+++IL++RL  LT L  D ++ E + L  +I+   ++
Sbjct: 412 ----------------FKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNV 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L   S    IIK+ELL +K +    RRT+I      +  ED I  E +V+T+SH GY+KR
Sbjct: 456 LVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y+ Q RGG G  G   R+ DF   L I + H  +LFF+  G  +  +V+ +P GS
Sbjct: 516 TSLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEGS 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ NI+ L Q +++   +   +  ++    + YV+  T+ G +++  L ++ + 
Sbjct: 576 KISKGRAIQNIIHLQQDDKVNAYILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSRP 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + G  A+ +   D +L       ++ + +  K G+ +RF  + +R   GR S GV GI 
Sbjct: 636 RKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGRIIRFSENKVRS-TGRTSSGVIGIH 694

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              K D VI M                                                 
Sbjct: 695 FTNKNDMVIGMI------------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C + K  +  +L VSEKGFGKR++  D+RI+NR GKGI+  ++++  + G L+A+  V
Sbjct: 707 --CVDGKKAKGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINITQ--KTGYLIAIKHV 762

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D D ++++   G +IR+ V+ IR+  R T+GV + +  +++ +  V ++
Sbjct: 763 TDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVRLINLKENDAIADVAKV 812


>gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
          Length = 899

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 343/898 (38%), Positives = 524/898 (58%), Gaps = 56/898 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V +   MQ SY+ YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KCA
Sbjct: 18  IETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG++AIYD L R+AQ W LR  LI GQGNFGS   DP AA RYTECR+
Sbjct: 78  RVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFGSPGNDPAAAMRYTECRM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF PNYDG  QEP +L +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 138 APLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNGSAGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++PD       DAL+E ++GPDFP GA+I+GR GI+ AY TGRGSI  R
Sbjct: 198 REVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIVGREGIEQAYRTGRGSITQR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +++ +  R  +V+TE+PY VN   + +KIA+L    ++  IAD++D  S R G ++
Sbjct: 258 AVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQGIADVKDNTSSRTGQQL 317

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L ++T LQ+ FS NM+AL    P   ++   +  +V  + +V+ 
Sbjct: 318 VVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLSIDQFISNWVEHQIDVIR 377

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA + AH+  GL  A+  LD V+ +IR SP  + AR+ L++           
Sbjct: 378 RRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDARQGLIR----------- 426

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL+++L RL  L R  I + L  L + I +  DI
Sbjct: 427 ---------------LLEIDEIQANAILDMQLRRLAALERQKIIDRLAELELIIADLEDI 471

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++ +R   I+  EL  +  +    RRT+I+    D+  ED I  E++VV+++  GY KR
Sbjct: 472 LANVARQRQIVGDELDEIVAKYGDDRRTQIIAADGDLSMEDLIPDEELVVSITRGGYAKR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              + YR Q+RGGKG  G  +R +D V      + H  +LFF++ G VY+ K + LP  +
Sbjct: 532 TLANEYRTQKRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRIKAYNLPEAA 591

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +  +LS    E I  ++   + E +    Y+V AT+ G +++ +L D+    +
Sbjct: 592 RDAKGGHVAGLLSFQPDESIAQVLAIRDYEQA---PYLVLATRSGLIKKTRLGDYNSPRQ 648

Query: 671 SGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
           +G IA+   +  DE++  E    E+DILL ++ GQ +RF     ++   GR + GV G+ 
Sbjct: 649 AGVIAINFREDDDELIGAELVNSEDDILLVSRKGQAIRFRADDNQLRPMGRATSGVTGMK 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD ++SM+++              +H++A+  + +G +E   + ++ + V   +S  
Sbjct: 709 FRDGDSLLSMSVI------------RAEHVAAE--IAAGLSE---ANEDTADVAAPVSGA 751

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              + ++KEQF+ T+++ GF KRT   ++R+ +R G GI+   ++  +  G LV  F V 
Sbjct: 752 ESPD-QVKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTMALANADR-GGLVGAFIVV 809

Query: 849 DNDQIILVSDKGTLIRVPVN-EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           D D+++ ++  G ++R P+N + R   R+T+GV   S  K + V  V R  E+  VD+
Sbjct: 810 DGDEVLSITASGQVVRSPINSDFRATGRSTQGVKFVSPKKGDSVAVVARSVEAREVDD 867


>gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211]
 gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211]
          Length = 818

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 358/895 (40%), Positives = 529/895 (59%), Gaps = 97/895 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V IT+E++ +++ YA+NVI+ RA+PD+RDGLKPVHRRI++ M+Q G+  N+K+ K A + 
Sbjct: 7   VDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAAVV 66

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEVM KYHPHG++ IYDA+ R+ Q W++R  +++ QGNFGS+DGD  AA RYTE R+ K 
Sbjct: 67  GEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMTKL 126

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TVD +PNYD +  EP VL +  PN+LVNG  GIAVGMATNIP HNL E+
Sbjct: 127 AEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLTEI 186

Query: 199 VDGCVAVIDNP---------DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           V+G +++ID P          + LD LM  ++GPDFPTG  I  R+GI++AYATG   + 
Sbjct: 187 VNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGGRI-SRSGIRDAYATGHAGLK 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
           +RG + I++ +G R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  
Sbjct: 246 VRGKARIDEKNG-RTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPV 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREE 367
           R+V+ELKRGA   ++LNQLY+YT LQ+ F+V N+  +NG +P+   L+  ++ F+  R +
Sbjct: 305 RIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIVNG-EPKVLPLLDTMRYFLEHRAD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT Y L KA++RAH+L GL  A+ ++DEV+ +IR S     AR  LM R       
Sbjct: 364 VVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTR------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++VQ +AIL++RL RL GL R+ ++ E N L   I   
Sbjct: 417 -------------------FQLTDVQAQAILDMRLQRLVGLEREKLQGEYNELMTLIDRL 457

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL     L   IK+EL  ++D     RR+ I +   D+  ED I  EDMV+T++  GY
Sbjct: 458 KAILGDEKLLWREIKKELKDIRDRYGDERRSTITQLEEDISKEDLIAVEDMVITMTRAGY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G ++ EK++ LP
Sbjct: 518 LKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDLP 577

Query: 608 IGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                A+G  + N+L  L + E + +++   + + + +    VFATK G +++ ++ D+ 
Sbjct: 578 EAGRDAKGTHIKNLLPGLRENESVASVLAIKDFDEAGS---FVFATKRGMIKKTQIRDYG 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   D ++ V      + I+L T  GQ +RF  + +R   GR + GV G
Sbjct: 635 NITSAGLIALNLQDDDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVR-DTGRATQGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L  GD V+SMA+V                         GD E+              S
Sbjct: 694 IRLRDGDHVVSMAVV------------------------PGDDED--------------S 715

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E            +L +SE G GKRT   D+    R G G+   DV++  + G LVA+  
Sbjct: 716 E------------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTE--KTGKLVALAR 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  ++++++++ KGT+IR  V E+R+  R  +GV I +    + V+S   IR+ +
Sbjct: 762 VAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQGVKIINLGDGDCVISAFPIRKED 816


>gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
 gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
          Length = 838

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 354/896 (39%), Positives = 519/896 (57%), Gaps = 92/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM++SY+ YA++VI+GRAIPD+RDGLKPVHRR L+ M + G   +K Y K A
Sbjct: 14  VIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R     MGKYHPHG+A+IYD L +MAQ +S R+ L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 74  RAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEARL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL DL K TVDF PN+D S +EP VL ++ PN+LVNG  GIAVGMATN+P HNL
Sbjct: 134 TRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV       I NPD  ++ LM+++ GPDFPTG +I G  GI +AY TG G + +RGV+ 
Sbjct: 194 REVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGTEGIVSAYHTGYGKLTVRGVAE 253

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE       +I+++EIPYQVNKA M+E IA LV+EK+I  I+DLRDESDR G RVV++LK
Sbjct: 254 IEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVDLK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G    V+LNQLY++T L+S F +  +A++  +P+   L  I+  F+  R  VV RR ++
Sbjct: 314 KGVIPTVVLNQLYKHTPLESTFGIINLAISDNQPKVLGLKAIISEFLHHRATVVRRRCEF 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DR H+L+GL +A+  +DEV+  IR S + E A++ L+                 
Sbjct: 374 DLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALI----------------- 416

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L+E QT AIL+++L RL  L +  IR+E +SL   I E   ILS  +
Sbjct: 417 ---------ATFGLTEPQTVAILQMQLRRLAALEQAKIRDERDSLAHVIAELERILSCEA 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +   I++E++ V +     RRT I      +E ED I  + ++++++   Y+KR+PL  
Sbjct: 468 NIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKPVLISITTQNYIKRLPLET 527

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR QRRGG+G  G+  +DED V D+F+ S H  +L F++ G VY  KV+ +P  S  ++G
Sbjct: 528 YRMQRRGGRGVIGMATKDEDSVEDIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSKG 587

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L L Q E IT ++P     +  ++ Y++F+T+ G V +     F +   +G  A
Sbjct: 588 KAIVNLLEL-QDELITAVIPI---RTFRHDRYLLFSTEQGQVVKVPQDQFSRPRSTGINA 643

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++ V+      +++L+T+ GQ +RF    +R   GRN+ GVRGI L  GD +
Sbjct: 644 ISLRENDSLVDVKLTDGTKELILSTRKGQSLRFHEQTVRT-VGRNASGVRGIKLKYGD-L 701

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +  A V+  D           H+     L  G   E                        
Sbjct: 702 VQAATVVEKD-----------HLLTITELGYGKRTEF----------------------- 727

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            ++F      +G G+ T             G+R    +  N + A  A   V+ +D+I++
Sbjct: 728 -DEF------RGHGRGT------------MGVRNILTAPQNGVVATKA---VSSDDEIVV 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV----ERIRESEIVDEAE 907
           +S  G +IR+ V++I +  R+ +GV I    +D+RVV +    + I  +   DEAE
Sbjct: 766 MSALGNVIRMKVSDISVQKRSARGVRIIRLDEDDRVVGLAVLQQEILSASFDDEAE 821


>gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
 gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
          Length = 622

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 303/649 (46%), Positives = 440/649 (67%), Gaps = 31/649 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A I+N DI++D L++ I+ PDFPTG  I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             ++IE+ +G RE I+V EIPYQVNKA M++K A+LV +K++  I+ +RDESDR G R+V
Sbjct: 243 AKANIEEVNG-RECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT+LQS FSVN +AL   +P+   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E ++L   I++  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  VKD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKDRRMDIIKEELEVVKDKYGDERRSNIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P G+ 
Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            ++G+A+ N++++ Q +++   +   +  D+   N+ YV+ ATK  NVR
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDDDYINSHYVIMATK--NVR 622



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ++T+S  G+ KRTS  +++  NR G G +A+     NE   L  +F   ++  ++  
Sbjct: 500 EKVVITISHAGYIKRTSLTEYKTQNRGGVGQKASTTR--NE-DFLEHLFVGTNHQYMLFF 556

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVS 893
           + KG    + V EI   ++ +KG  I    +  +D++V++
Sbjct: 557 TQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQDDKVMA 596


>gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
 gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
          Length = 806

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 334/881 (37%), Positives = 521/881 (59%), Gaps = 97/881 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV  NK + K ARI GE
Sbjct: 7   IEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGE 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+AAIYD L R+AQDWS+R  L+EGQGNFGSVD DPPAA RYTE RL K + 
Sbjct: 67  VMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLSKISE 126

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+T++   N+DGS +EP+VL +++PN+L NG  GIAVGM TNIP HN+ E+VD
Sbjct: 127 ELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNISELVD 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+I NP I ++ L+E I GPDFPTG  I+GR GI+  Y TG+GS  IRG  H+E+  
Sbjct: 187 GFLALIKNPQISIEELIEFIPGPDFPTGGEIIGRAGIREMYTTGKGSFTIRGKLHVEEDK 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +++IV+TEIPY V+KA +++KI E   E   + I D+RDESD++G R+VIE+    + 
Sbjct: 247 -KKKKIVITEIPYNVSKADLIKKIVEYA-ENSSLQIKDIRDESDKEGLRIVIEIPNNVNE 304

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           D+I+N LY++T LQS F   ++ ++  K P    L  ++ AFV  R EVV +R ++   +
Sbjct: 305 DIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQFFYKQ 364

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              +AH+L GL  A  ++D ++ +IR S +  +A             IK+L+++ D    
Sbjct: 365 YSKKAHILEGLIKASRSIDTIISVIRNSEDQNSA-------------IKELMEMFD---- 407

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                     +E Q +AI++LRL RLT L    +  + N L  ++K   +++    ++  
Sbjct: 408 ---------FTETQAKAIVDLRLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDEKVYE 458

Query: 500 IIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            I +EL  +K +    R++ I+   E  +   + + I  +++V++++  GY+K + LS +
Sbjct: 459 KIIEELTYIKAQYGDSRKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMSLSTF 518

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R Q+RGGKG +G  + ++D + ++     H   LFF+S G VY    +++   S  ++GK
Sbjct: 519 RTQKRGGKGVTGSSLMNDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRTSKGK 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKLSDFIQINRSGKI 674
            +   +++++ E+I T++       S +N    + F TK G V+R  L DF  IN  G  
Sbjct: 579 HISKYINIDKDEKILTML-------SVDNFVGELFFVTKFGKVKRTSLKDFENINARGLR 631

Query: 675 AMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           A+  D  D ++SV+    E   IL+ TK G  +RFPIS +R   GR+++GV GI L+K D
Sbjct: 632 AINFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTM-GRSAMGVTGIKLSKDD 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S A+                                  L ND               
Sbjct: 691 KVVSSAL----------------------------------LSND--------------- 701

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E +ILTV+  G+GK T +  +RI  R+G GI+  ++S +++ G +V+V  V  N+ I
Sbjct: 702 ---ENYILTVTSLGYGKLTETSQYRIQKRAGLGIK--NISDVSKTGYVVSVSYVLGNEDI 756

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ +  G  I++ ++ +R   R TKGV + + ++ +++  +
Sbjct: 757 MIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADI 797


>gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 827

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 346/888 (38%), Positives = 505/888 (56%), Gaps = 93/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV  N  + K +
Sbjct: 18  VTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEAGVTSNSAHRKSS 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GE MG YHPHG++AIYD LARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 78  SVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ +DTVDF  NYD   +EP VL A +PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 138 SPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNGSSGIAVGMSTNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  VA+I  PD  ++ LME ++GPDFPTGA I+GR  +  AY TGRG + +R    
Sbjct: 198 GEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGANIVGRNAVHKAYKTGRGRVRVRAEFE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +++  G   +IV++E+P+Q NK+ ++E+IAE V +  I  I DLRDESDR G RVV+ELK
Sbjct: 258 VDEEEG---RIVISELPFQQNKSRLVERIAEDVNDGSIEGIRDLRDESDRDGIRVVVELK 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+V+ NQL   + L+  F V  +AL    P+   L   L+ +V  R +VV RR+++
Sbjct: 315 RDAMAEVVKNQLLE-SHLERTFGVINLALVDGSPQVLDLKQTLEYYVEHRRDVVRRRSEH 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +  DRAH+L G   A+  +D+VV  I+ S + + A+  L                  
Sbjct: 374 ELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAAL------------------ 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           ++ Y          SE Q   I+ ++L  LT +   +I +E   +   I+    IL    
Sbjct: 416 EADYE--------FSEAQAEHIVRMQLGSLTSMETQEIESEYEDVTARIERLETILGDPD 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I  EL  +KDE D  RRT  +E + D+  ED I  E+ VV +S   Y+KR+ L  
Sbjct: 468 ELDQVIITELREIKDEYDDERRTSFIEDVGDVTHEDLIPEEECVVVMSEDDYIKRMSLDT 527

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGGKG  G  +++ D V+ +F  ++H  +L F++ G +Y+ K + +P  S  ARG
Sbjct: 528 FRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQIYELKTYEIPEMSRTARG 587

Query: 616 KALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           K+ +N++ L+ GE I  ++      +DE      ++   T+ G ++R  +  F  I  +G
Sbjct: 588 KSAVNLIDLDDGEEIEAVVNTDDLDDDE------FLTMVTRDGYIKRTAVDQFGNIRSTG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A++L+  DE++ VE      DI++ ++ G  +RF  S  R   GR + GV GI L +G
Sbjct: 642 IRAIRLEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAM-GRTARGVIGIDLREG 700

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V  +A                                             I E+R   
Sbjct: 701 DAVAGVAA--------------------------------------------IDEDR--- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                 ++LTV+E G+GKR+   ++R+ +R+GKG+   D+   +  G  VA+  V   D 
Sbjct: 714 ----HNWVLTVTENGYGKRSDLDEYRLQSRNGKGL--IDIKTGDRNGEAVAIEAVTYGDH 767

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ +SD G ++R  V EI    R TKGV++ +   D+ V SV+ + ES
Sbjct: 768 LLAMSDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASVDIVSES 815


>gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2]
          Length = 852

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 355/911 (38%), Positives = 526/911 (57%), Gaps = 103/911 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KC+
Sbjct: 14  VEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRNFSKCS 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+YHPHG++AIYDA+ R+ Q W++R  L+ GQGNFGS   D  AA RYTEC++
Sbjct: 74  RVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSPGDDGAAAPRYTECKM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ + TVDF+ NYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 APLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G   ++ +P+      L+AL+ I++GPDFP GA ILGR GI++ Y TGRGSI  R
Sbjct: 194 REVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATILGRKGIEDTYRTGRGSITQR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+  G R  +VVT++PY VN   +  KIA  V++ ++  IADLRDES  R G R+
Sbjct: 254 AVVEVEEIQG-RTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGIADLRDESSGRTGQRL 312

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++TSLQ  FS NM+A+    P   +L   L+ +V  + EV+V
Sbjct: 313 VIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVDSVPRTLSLDSFLRLWVKHQVEVIV 372

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L G   A+  LDEV+ +IR SP+ + AR  LM          DL
Sbjct: 373 RRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARSGLM----------DL 422

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++                + E+Q  AIL+L+L RL  L R  I+ E   +  +I E   I
Sbjct: 423 LE----------------VDEIQANAILDLQLRRLAALERLKIQEEAEKIEQQIAEFKYI 466

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L++ +R   I+ +EL  + +     RRT+I+ G   D+  ED I  E++VVT++  GY K
Sbjct: 467 LATPARQREIVSEELDEIVERYGDDRRTKIMAGFDGDVSMEDLIPEEEVVVTITRGGYAK 526

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YRAQ RGGKG  G  +R +D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 527 RTQNHLYRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEG 586

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G+ + N+L+L  GE I  ++   + E +    +++ AT+ G V++ +LS++    
Sbjct: 587 SRDAKGQHVANLLALQPGETIAKVLSIRDYEEAE---FLILATQSGVVKKTRLSEYDSNR 643

Query: 670 RSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723
             G IA+ L       DE++S    + E+ +L+ ++ G  +RF     +IR   GR + G
Sbjct: 644 TGGVIAINLREYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAADDDSIRPL-GRVTGG 702

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+     D++++M +                        I  DT              
Sbjct: 703 VTGMKFKGDDELLTMDV------------------------IQPDT-------------- 724

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALV 842
                          F+  V+E G+ KRT   ++R+  R G GIR   V+KI E  G LV
Sbjct: 725 ---------------FVFVVTEGGYAKRTPVDEYRLQGRGGLGIR---VAKITEQRGDLV 766

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900
               V++ +++++V ++G ++R  ++E+    R T GVV     K++R+++V R  E+  
Sbjct: 767 GGLIVDEGEEVLVVMERGKIVRSNIDEVPAKGRNTMGVVFAKPGKNDRIIAVTRGPETVV 826

Query: 901 -EIVDEAESTE 910
            E+ +EA+  E
Sbjct: 827 EELDEEADEPE 837


>gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
 gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
          Length = 826

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 366/903 (40%), Positives = 518/903 (57%), Gaps = 94/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE   +S   +   I  V +  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTEPTDTSPPRDR--IEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG++AIYDAL RMAQ WSLR  LI+GQGNFGS 
Sbjct: 59  QDQGFRPDRGYVKSARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  ++ D+  +TVDF PNYDG  +EP VL AR PN+LVNG G
Sbjct: 119 GNDGAAAMRYTEARLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D     +++ D D    L+A+ EI++GPDFPT  +I+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIVGTDG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ SG R  +V+TE+PYQVN   M+  IAE VR+ +I  I
Sbjct: 239 IADAYTTGRGSIRMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+A+    P    L 
Sbjct: 299 AQIDDESSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +VA + EV+VRRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S + + AR 
Sbjct: 359 QIIRLYVAHQIEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARV 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+          L+D                + E+Q RAIL ++L RL  L R  I +
Sbjct: 419 GLME----------LLD----------------VDEIQARAILAMQLGRLAALERQKIFD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I +
Sbjct: 453 ELAEIEEEIADYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQ 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITETGYAKRTKTELYRSQKRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTTR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+L   E+I  ++     E +    Y+V ATK G
Sbjct: 573 GRVYRIKAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYEDAP---YLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             ++++L++F   NRSG I A+ L   DE++    C+ ++D+LL ++ GQ +RF  +  +
Sbjct: 630 LTKKSRLTEF-DSNRSGGIVAVNLKDDDELVGAALCSADDDLLLVSEHGQSIRFHANDEQ 688

Query: 715 VFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +   GR + GV G+   + DQ+++M +V            Y+                + 
Sbjct: 689 LRPMGRATSGVLGMRFNEDDQLLAMNVVRDG--------AYL----------------LV 724

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           +     +   ++ E   Q               G G  T  YD R   R G         
Sbjct: 725 ATSGGYAKRTDLGEYPAQ------------GRGGKGVLTVQYDRR---RGG--------- 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                  LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ +R+++
Sbjct: 761 -------LVGAVIVDDDTELYAITSGGGVIRTAARQVRRAGRQTKGVRLMNLAEGDRLIA 813

Query: 894 VER 896
           V R
Sbjct: 814 VAR 816



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 36/257 (14%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           KHG+ RR ++           IA + D RDE L      QE+ ++  T+ G   R     
Sbjct: 488 KHGDERRTRI-----------IAAEGDVRDEDL----IAQEDVVVTITETGYAKRTKTEL 532

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            R    R   GV+G +L + D V    +    D      I +        R+ + +  ++
Sbjct: 533 YRS-QKRGGKGVQGAALKQDDIVAHFFVCSTHDW-----ILFFTTRGRVYRIKAYELPDM 586

Query: 773 TSLKNDSSVEGNIS----EERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSG 824
                   V   ++    E+  Q + L+      +++  +++G  K++   +F  SNRSG
Sbjct: 587 NRAARGQHVANLLALQTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTEFD-SNRSG 645

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN--EIRIASRATKGVVI 882
            GI A ++   +E   LV     + +D ++LVS+ G  IR   N  ++R   RAT GV+ 
Sbjct: 646 -GIVAVNLKDDDE---LVGAALCSADDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLG 701

Query: 883 FSTAKDERVVSVERIRE 899
               +D++++++  +R+
Sbjct: 702 MRFNEDDQLLAMNVVRD 718


>gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 821

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 340/876 (38%), Positives = 531/876 (60%), Gaps = 85/876 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G   ++ Y K A
Sbjct: 9   IIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQPYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG++++Y AL RMAQ+W LR  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 69  RTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDF  N+D + +EP VL  R P +L+NG  GIAVGMATN+P HNL
Sbjct: 129 GNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATNMPPHNL 188

Query: 196 GEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            E ++G +A ID+  +ID+D LM+ I+ PDFPTGA I G  GI+  +  G+G I++RG  
Sbjct: 189 TECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIYGFQGIREVFEVGKGRILLRGKV 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE    ++E+IV+ EIPY VNK  ++E IA LV EK++  +  + DESDR+G R+V+++
Sbjct: 249 EIE-IHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGMRIVVDV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+  ++ V+LN+LY+ T+L+S F+VN +AL   +P    L  ++  FV  R EVVVRRT+
Sbjct: 308 KKDFNSGVLLNKLYKLTALESSFNVNNIALVNGRPRTLNLKELICYFVEHRVEVVVRRTQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LN+   R H++ GL IA  ++DE+V II  S NP  A                    I
Sbjct: 368 YDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEA--------------------I 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D  S      G   L+E+Q+RAI+E+RL +LTGL +D +R E   L   I    +ILS+R
Sbjct: 408 DRLS------GRFDLTEIQSRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWKEILSNR 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L+ IIK EL+ V+D     R+T IV    D   +D    ++M++T+SHLGY+KR PL 
Sbjct: 462 NILMKIIKDELIEVRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGYIKRTPLV 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGG G     +RD+DFV  ++  + H  +LFF+  G  Y  KV+++P G+  ++
Sbjct: 522 DFRAQNRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPAGAKTSK 581

Query: 615 GKALINILSLNQGERITTIM--PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G+A+ N+L+++  ++++  +   +  D+    + Y+VF TK G +++  L+ + +  ++G
Sbjct: 582 GRAIQNLLNIDTNDKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYSRPRQNG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AK 731
             A+ +   DE+++V+     N+I++  + G+ +RF  + +R   GR + GV  ++L   
Sbjct: 642 VKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRFNENKVRSM-GRLAAGVISMTLDLV 700

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D++I M I+                                   ND             
Sbjct: 701 DDEIIGMIII-----------------------------------NDK------------ 713

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               K + +L VSE+G+GKR+   D+RI NR GKGI+  ++++  + G LV++  V +++
Sbjct: 714 ----KRENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITE--KTGFLVSIKNVTEHN 767

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +++++  G  IR+ V+++ +  RAT+GV + +  K
Sbjct: 768 DVMIINKSGIAIRIKVSDLNVIGRATQGVRLINLEK 803


>gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
 gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
          Length = 838

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 339/867 (39%), Positives = 506/867 (58%), Gaps = 87/867 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I  E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++    KCA+I 
Sbjct: 15  IPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRYSGPTRKCAKIV 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDP AA RYTE ++ K 
Sbjct: 75  GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPAAAYRYTEAKMAKI 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +++D+ K+TVDF  N+D S +EP VL A++P +L NG  GIAVGMATN+P HNL E+
Sbjct: 135 AESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREI 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
                A IDNP+I +D L + I+GPDFPTG  I G+ GI+ AY TGRG I++RG   IE 
Sbjct: 195 ASAISAYIDNPEITIDELCKHIKGPDFPTGGTIFGKKGIRQAYKTGRGKILVRGRFTIEV 254

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRG 317
               +E I+ TE+PYQVN   ++ +I EL R K I  IA++ DE SDR G R+VIELKRG
Sbjct: 255 DKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVNDETSDRTGLRIVIELKRG 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A   V+LNQL+  T+LQS F V  +AL   +P+  TL  +++ FV  R EVV RRT++ L
Sbjct: 315 AITKVVLNQLFAKTALQSSFGVINLALVEGRPQTLTLKDLVRCFVNHRIEVVTRRTRFDL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA +RAH+L  L +A+ N+DEV+ IIR S +  TA+  LM+R                 
Sbjct: 375 RKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMKR----------------- 417

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
               G D      EVQ++AI++++L RLT L   D+R EL  L I I    D+L    ++
Sbjct: 418 ---FGFD------EVQSQAIVDMQLKRLTNLEIKDLRKELEELEILIAHLKDLLEHPEKI 468

Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
             ++K E   + D+    RRT IV + + ++  ED I +E+MV+ +S+LGY+KR+P+S Y
Sbjct: 469 RALVKDETNEIADKFGDERRTDIVADEVEELNIEDLIQKEEMVILISNLGYIKRIPVSAY 528

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           ++Q RGGKG +   + ++DF+  +F  STH  ++F ++ G  Y  KV  +P  S  +RG 
Sbjct: 529 KSQNRGGKGSNSANLAEDDFIDQIFTASTHDYIMFITNEGKAYWLKVHEIPEASRTSRGS 588

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + ++LS++  E IT ++   E   S    Y++ AT  G V++    +F      G IA+
Sbjct: 589 HIKSLLSVSGDEEITAVVSLKEFSDST---YLLMATAAGVVKKVTTDNFQNAKTRGIIAI 645

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           KLD  D+++S    T +++I+L T+  Q +R     IR   GR S GV GI LA+GD++ 
Sbjct: 646 KLDDGDKLVSAILTTGKDEIMLITRHAQALRMTEEEIRPL-GRASRGVAGIKLAQGDELT 704

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                             ++    Q+ LI                               
Sbjct: 705 GA----------------LRVADNQKMLI------------------------------- 717

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
                 ++E G+GKR    +F    R+  G R   +S+  + G +V +  V D+D+++ +
Sbjct: 718 ------MTENGYGKRVEFSEFTPHGRATGGQRIYTLSE--KTGEVVGLLTVLDDDEVVCI 769

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIF 883
           + +G  IRV V+ I I  R+ +GV + 
Sbjct: 770 TGQGKTIRVNVDSISIMGRSAQGVRVL 796



 Score = 42.4 bits (98), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 20/228 (8%)

Query: 683 EILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           E L++E   Q+ + ++L + LG   R P+SA +    R   G    +LA+ D +    I 
Sbjct: 497 EELNIEDLIQKEEMVILISNLGYIKRIPVSAYKS-QNRGGKGSNSANLAEDDFIDQ--IF 553

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS----EERCQELKLKE 797
             +  DY   I ++ +      L   +  E +     S ++  +S    EE    + LKE
Sbjct: 554 TASTHDY---IMFITNEGKAYWLKVHEIPEASRTSRGSHIKSLLSVSGDEEITAVVSLKE 610

Query: 798 ----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                ++L  +  G  K+ ++ +F+  N   +GI A    K+++   LV+       D+I
Sbjct: 611 FSDSTYLLMATAAGVVKKVTTDNFQ--NAKTRGIIAI---KLDDGDKLVSAILTTGKDEI 665

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +L++     +R+   EIR   RA++GV     A+ + +    R+ +++
Sbjct: 666 MLITRHAQALRMTEEEIRPLGRASRGVAGIKLAQGDELTGALRVADNQ 713


>gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985]
 gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985]
          Length = 826

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 362/901 (40%), Positives = 511/901 (56%), Gaps = 94/901 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL  M   G   ++ YVK A
Sbjct: 14  IEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQDQGFRPDRGYVKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   E MG YHPHG+ AIYDAL RMAQ WSLR  L++GQGNFGS   D  AA RYTE RL
Sbjct: 74  RPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEARL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG  +EP VL AR PN+LVNG GGIAVGMATNIP HNL
Sbjct: 134 APLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV D     +++ D D    L+A+ EI++GPDFPT  +I+G  G+ +AY TGRGSI +R
Sbjct: 194 REVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIVGTDGVHDAYTTGRGSIRMR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV  +E+ S  R  +V+TE+PYQVN   M+  IAE VR+ +I  I+ + DE SDR G R+
Sbjct: 254 GVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGISAIDDETSDRIGMRI 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+A+    P    L  IL+ ++A + EV+V
Sbjct: 314 VVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLDQILRLYIAHQIEVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  LM+          L
Sbjct: 374 RRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARAGLME----------L 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q  AIL ++L RL  L R  I +EL  +   I +  DI
Sbjct: 424 LD----------------VDEIQADAILAMQLRRLAALERQKIIDELAEIEEAIADYQDI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  + D     RRTRI+    ++ DED I RED+VVT++  GY KR
Sbjct: 468 LARPERQRAIVRDELKEIVDRHGDERRTRIIAAEGEVRDEDLIAREDVVVTITETGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 528 TKTDLYRSQKRGGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPETS 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+L   E+I  ++     E S    Y+V ATK G  +++KL++F     
Sbjct: 588 RAARGQHVANLLALQTDEKIAQVIHLQTYEDSP---YLVLATKRGLTKKSKLTEFDSNRS 644

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G IA+ L   DE++    C+ ++D+LL ++ GQ +RF  +  ++   GR + GV G+  
Sbjct: 645 GGLIAVNLRDEDELVGAALCSSDDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRF 704

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + DQ+++M +V            Y+   +      SG   + T+L  +  V+G      
Sbjct: 705 NEDDQLLAMNVVRDG--------AYLLVAT------SGGYAKRTAL-GEYPVQGR----- 744

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                            G G  T  YD R   R G                LV    V+D
Sbjct: 745 ----------------GGKGVLTVQYDRR---RGG----------------LVGAVIVDD 769

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++  ++  G +IR    ++R A R TKGV + +  + +R+++V R  E    D AE  
Sbjct: 770 DTELYAITQGGGVIRTDARQVRRAGRQTKGVRLMNLGEGDRLIAVARNDE----DSAEVA 825

Query: 910 E 910
           E
Sbjct: 826 E 826


>gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 893

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 357/912 (39%), Positives = 514/912 (56%), Gaps = 104/912 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K +
Sbjct: 23  IQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSKSS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG++AIYDALAR+ Q WS+R  L+ GQGNFG+     PAA RYTEC++
Sbjct: 83  RVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAGQGNFGTPGNLGPAAPRYTECKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 143 APLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+  G    +++PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R
Sbjct: 203 REIARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+
Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L G ++ +V+ + +V+V
Sbjct: 322 VIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVSHQIDVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L KA +R H+L GL  A+  LD V+ +IR SP  E AR  LM            
Sbjct: 382 RRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM------------ 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E Q  AIL L+L RL  L R  I+ E   L   +K+  +I
Sbjct: 430 --------------GLLDVDEAQAEAILSLQLRRLAALERLKIQQESEELRARVKDLREI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  ED+VVT++  GY KR
Sbjct: 476 IASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYAKR 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP G 
Sbjct: 536 TRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGG 595

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G+ + N+L+   GE I  +M   + D++     ++V AT+ G V++ +LS++    
Sbjct: 596 RDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD----FLVLATRRGLVKKTRLSEYNSNR 651

Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
             G IA+ L      + DE++S    +   D+LL +  GQ +RF      +R   GR + 
Sbjct: 652 SGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRP-TGRATS 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   + D +++M +V  +  D D                                 
Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840
                            +  V+E G+ KRT+  D+ +  R G G++  ++  ++ N +GA
Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899
           LV     +  D+++ +   G ++R  V E+    R T+GV        +R+++V R  E 
Sbjct: 781 LV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARSTER 836

Query: 900 --SEIVDEAEST 909
              E VD A+S 
Sbjct: 837 DMEEAVDAADSA 848


>gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1]
          Length = 836

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 358/897 (39%), Positives = 509/897 (56%), Gaps = 92/897 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + D E    +  V I  EMQ SY+ YA++VI+GRA+P + DGLKPVHRR+L+ M + G  
Sbjct: 12  AGDGEGGGRVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFR 71

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VKCAR+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI GQGNFGS   DP A
Sbjct: 72  PDRSFVKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQGNFGSRGNDPAA 131

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL   A  +L D+ ++TVDF  NYDG  QEPVVL +R PN+L+NG  GIAVGM
Sbjct: 132 AMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSSGIAVGM 191

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNL EV  G    ++NPD      L+ALME I+GPDFPT  +I+GR GI++AY 
Sbjct: 192 ATNIPPHNLREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLIVGRDGIESAYR 251

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R V  +E  +  R  +VVTE+PY VN   ++E IA +VR+ +I  I+++ DE
Sbjct: 252 TGRGSIRMRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDGKIAGISEIVDE 311

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            SDR G R+V+ LKR A A V+LN LY++T LQ  F  NM+++    P    L  I++ +
Sbjct: 312 SSDRIGMRIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVDGVPRTLRLDQIVRHY 371

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR       
Sbjct: 372 VRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATVDVAR------- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                   LIDL             + + E+Q +AIL+++L RL  L R  I +EL  + 
Sbjct: 425 ------AGLIDL-------------LTVDEIQAQAILDMQLRRLAALERQKIVDELAEIE 465

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI +  DIL+   R   I++ EL  + ++    RRTRIV    D+ DED I  ED+VVT
Sbjct: 466 REIADYEDILTRPERQREIVRDELAEIVEQHGDDRRTRIVGYDGDVTDEDLIAVEDVVVT 525

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ 
Sbjct: 526 ITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVNHFFVCSTHDWMLFFTNRGRVYRL 585

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP  +  ARG+ L N+L+L   E I  +M   + ++     Y+V AT++G V++++
Sbjct: 586 KAYELPEANRTARGQHLANLLALQPDEEIAQVMQIKDYQA---RPYLVLATRNGLVKKSR 642

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719
           L+DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  +  A+R   GR
Sbjct: 643 LTDFDSNRTGGLIGINLRDDDELVGAVLCSGDDDLLLVSAEGQSIRFTATDDALRPM-GR 701

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV G+    GD+++++ +                        I  DT  + +     
Sbjct: 702 ATSGVLGMRFNSGDKLLALGV------------------------IRPDTYLLVATTGGY 737

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    I +   Q               G G  T  YD R         R T         
Sbjct: 738 AKRTPIEDYPVQ------------GRGGKGVLTLQYDRR---------RGT--------- 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            LV    V  +D++  ++  G +IR    E+R A R TKGV + +  +   +++V R
Sbjct: 768 -LVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGESSTLLAVAR 823


>gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
 gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
          Length = 819

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 340/885 (38%), Positives = 528/885 (59%), Gaps = 88/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++ V  N  Y K A
Sbjct: 13  IKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELSVYSNSSYKKAA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RM+QD+S R  L++G GNFGS+DG   AA RYTE ++
Sbjct: 73  RIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHKAAAMRYTEVKM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  L+ ++ K+T++F  NYDGS +EP+VL    PN+L+NG  GIAVGMAT IPTHNL
Sbjct: 133 AKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAVGMATKIPTHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVDG +A I + +I +  LM+ I+GPDFPTG  +LG  G++NAY TG+GS++I+  +H
Sbjct: 193 AEVVDGLIAYIKDKNISILGLMQYIKGPDFPTGGELLGLKGLENAYKTGQGSVIIKAKTH 252

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G +  IVVTEIPYQ+ K+A++EKIA LV++K I  I DLRDES RQG ++VIELK
Sbjct: 253 ILEEKG-KTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDESSRQGMKIVIELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A++ VILNQLY+++ L+  F +NMVAL   KP+  +L  IL+AF  FR +V+ ++  +
Sbjct: 312 KNANSKVILNQLYKHSPLRISFGINMVALVDKKPQLVSLKTILEAFFNFRIQVINKQKFF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDLI 434
            L KA+ R H++      + ++   +++I+ S + + A+++LM Q  ++A          
Sbjct: 372 ELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQYQFDA---------- 421

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                            +Q++AILE+ L RL+      +  E   L  EI EC  I+ S+
Sbjct: 422 -----------------IQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAECQSIIESQ 464

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +   I+++ELL +K +    RRT +  +  LD +DED I ++++++T+++ GY+K    
Sbjct: 465 PKKEKILEKELLEIKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNKGYIKVTDA 524

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q+RGGKG +G+ + +EDF+  L   STH  +LFF++ G VY+ K +++ +    +
Sbjct: 525 EFYRQQKRGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQINLSDKSS 584

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  L+N+L+L  GE +T+       +   N  Y+ FATK G V++  L ++  I  +GK
Sbjct: 585 KGIPLVNLLNLKPGETLTSCASVKNFDQPDN--YLFFATKKGIVKKTSLKEYSNIRENGK 642

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+L+V       +I+L +  G  + F  S  R    R S GV G+ L KG+
Sbjct: 643 IAIVLRDDDEVLTVANTNGRQNIILASNNGNAICFDESQTRK-TSRQSQGVIGMDLKKGE 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +I  A+      D                                              
Sbjct: 702 FLIGAALFDPNSKD---------------------------------------------- 715

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
               Q IL ++EKG+GK TS   +RI +R+GKG +   ++  ++ G L+A+     +  +
Sbjct: 716 ----QSILVMTEKGYGKITSVNQYRIQSRNGKGSKTIKIN--SKTGRLIALKTAASSQDL 769

Query: 854 ILVSDKGTLIRVPVNEIR-IASRATKG--VVIFSTAKDERVVSVE 895
           I+ SDKG +IRV +++I+    +AT+G  ++   T     +V+VE
Sbjct: 770 IISSDKGQVIRVSISDIKNTKHKATQGTKIIKLKTGHKAVLVAVE 814


>gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
 gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A
 gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
          Length = 839

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 333/902 (36%), Positives = 523/902 (57%), Gaps = 88/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++
Sbjct: 14  ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R
Sbjct: 74  PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ KDTVDF  NYDG  QEP VL A +PN+L NG  GIAVGM+T+
Sbjct: 134 YTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTS 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP+HNL E++ G + +IDNPD  ++ L+ +I+GPDFPTGA I+   GI++ + TG+G++V
Sbjct: 194 IPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVV 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+    R  +VVTEIPY VNK +++EKI ELV+ + I  IAD+RDES R+G R
Sbjct: 254 IRSKVSIEQLP-TRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P+   +   L  ++  + +V+
Sbjct: 313 LVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+T++ L K ++R H+L GL IA  N+DEV+ II+ S N + A   L +R         
Sbjct: 373 IRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L E+Q RA+L++RL  L+ L  + ++ E   L   I+ C  
Sbjct: 424 -----------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQ 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           +L+ +   L +IK++L  + ++   PRR+ I+ G+  D++DED I +E++V+T+S  GY+
Sbjct: 467 VLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYL 526

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P 
Sbjct: 527 KRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPP 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G    +G   +N++ +++ E+I  ++      + + N Y  F TK+G ++R  LS+F  I
Sbjct: 587 GFRTNKGIPAVNLIKIDKDEKICALISV----NDYQNGYFFFCTKNGTIKRTSLSEFANI 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              GK A+     D + SV   + ++DI + +  G  VRF    +R  + R ++GV GI+
Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGIN 701

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + + V                                         N  S   N S  
Sbjct: 702 LNQCEFV-----------------------------------------NGLSTSSNGS-- 718

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+V + G GK TS   +R++ R+ KG++   V+   + G +V    V 
Sbjct: 719 ----------LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTVF 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            N+ ++++S  G ++R+ + ++    + T GV +    + ER+ +V   ++ E +    +
Sbjct: 767 GNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTA 826

Query: 909 TE 910
           TE
Sbjct: 827 TE 828


>gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402]
          Length = 815

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 341/900 (37%), Positives = 521/900 (57%), Gaps = 101/900 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +  
Sbjct: 7   KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RY
Sbjct: 67  TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN+
Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++
Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G R
Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +VV
Sbjct: 307 VVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S + +TA+  LM+R         
Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMER--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                       G D      +VQ +AI++++L RLT L  +D+R EL  L + I    D
Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY+
Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +  
Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  +RG  + ++LS++  E IT ++   E +   +  Y++ AT  G V++    +F   
Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFANA 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+KLD  D+++S      +++I+L T+ GQ +R     IR   GR+S GV GI 
Sbjct: 638 KTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTGIK 696

Query: 729 LAKGDQVI-------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L+  D++        +  +++  +  Y +R+ +    SA  R   G              
Sbjct: 697 LSSEDELTGALRVTENQKMLVMTENGYGKRVEF-SEFSAHGRGTGG-------------- 741

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           Q I T+SEK                                G +
Sbjct: 742 ----------------QRIYTLSEK-------------------------------TGEV 754

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V +  V D+D+++ ++ +G  IR+ V+ +    R+ +GV I      + ++ ++ +   E
Sbjct: 755 VGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDE 814


>gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160]
 gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160]
          Length = 822

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/894 (39%), Positives = 510/894 (57%), Gaps = 93/894 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ YVKCA
Sbjct: 10  IEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRPDRSYVKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS   DP AA RYTE RL
Sbjct: 70  RVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L ++ ++TVDF+PNYDG  QEP+VL  R PN+L+NG  GIAVGMATN+P HNL
Sbjct: 130 TPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMATNMPPHNL 189

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV D    ++D+P+ +    L A ME ++GPDFPT  +I+GR GI+ AY TGRGS+ +R
Sbjct: 190 REVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIVGREGIEEAYRTGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+ +  R Q+VVTE+PYQVN   + E IAE VR+ R+  I+++ DE SDR G R+
Sbjct: 250 AVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADESSDRVGRRL 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI L+R A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  + EV+ 
Sbjct: 310 VITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDGVPRTLRLDELVRYYVLHQIEVIQ 369

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAH+L GLA A+  LD V+ +IR S + + AR  LM          DL
Sbjct: 370 RRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARSGLM----------DL 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q  AIL+++L RL  L R  I +EL  L   I +   I
Sbjct: 420 LD----------------IDEIQATAILDMQLRRLAALERQRILDELAELEDRIADLQAI 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  R   II+ EL  + ++    RRT+ V    D+  ED I  E++VVT++  GY KR
Sbjct: 464 LDSPERQRQIIRDELAEIVEKYGDDRRTKFVANDGDVSMEDLIAEEEVVVTITRTGYAKR 523

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +
Sbjct: 524 TKSDLYRSQRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAKAYELPEAN 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG  + NIL+    E+I  +M   +   +    Y+V AT +G V++ +L+DF     
Sbjct: 584 RTARGAHVANILAFQPDEKIAQVMQIKDYGVAP---YLVLATANGQVKKTRLTDFDSPRS 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++       + D+LL T+    +RF    + +R   GR + GVRGI+
Sbjct: 641 GGVIAINLRESDELVGAALIDPDQDLLLVTRKAMSIRFKADDATLRPM-GRATEGVRGIA 699

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D ++SM +V                                    +  V+  ++ E
Sbjct: 700 LSPDDSLLSMIVV------------------------------------EEGVDVLVATE 723

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R                 GF KRT   ++    R GKG+   D    +  G LV    V 
Sbjct: 724 R-----------------GFAKRTGIENYPAQGRGGKGVLTADPK--SRKGNLVGALSVR 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901
             D++  ++  G +IR PVN +R    RAT GV + +  +D  +V++ R  +++
Sbjct: 765 LGDELYAITSGGGVIRTPVNGVRHNKDRATMGVKLMNLPEDVSIVAIARTTDND 818


>gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728]
 gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 831

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 330/736 (44%), Positives = 464/736 (63%), Gaps = 43/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  +MQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+GM   G   ++ YVKC+
Sbjct: 19  IEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYGMYDGGYRPDRGYVKCS 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+YHPHG++AIYD+L RMAQ WS+R  LI+GQGNFGS   DP AA RYTE RL
Sbjct: 79  RVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTESRL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +D+VDF PNYDG   EP VL AR PN+LVNG  GIAVGMAT IP HNL
Sbjct: 139 DPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVNGSEGIAVGMATKIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV       +DN + D    L+AL+++++GPDFPT A+I+GR GI++AY TGRGSI +R
Sbjct: 199 REVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIVGRAGIEDAYRTGRGSIRMR 258

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R  +VVTE+PYQVN   + E+IAELV++ ++  IAD+R+ES  R G R+
Sbjct: 259 AVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKLNGIADIREESSGRTGMRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +VA + EV+V
Sbjct: 319 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFVRHYVAHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL  A+  LD V+ +IR SP+ E ++  LM            
Sbjct: 379 RRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEESKTGLMN----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL+++L RL  L R  I +EL  +  +I +  DI
Sbjct: 428 ---------------LLEVDEIQATAILDMQLRRLAALERQKILDELAEIEAKIADLEDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+   R   IIK EL ++  +    RRT+IV  EG ++M  ED I RED+VVT++  GY 
Sbjct: 473 LAKPERQRQIIKDELGAIVAKWGDERRTKIVPFEGEVNM--EDLIAREDVVVTITRGGYA 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  + +YR+QRRGGKG SG  ++ +D V+  F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 531 KRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQ 667
            S  ARG+ + N+L+    E+I  +M      S ++   Y+V AT+ G V++ KL+DF  
Sbjct: 591 ASRTARGQHVANLLAFQPDEQIAQVMQI----SGYDVAPYLVLATRRGLVKKTKLTDFDS 646

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725
               G I + L   DE++       ++D+LL +K  Q +RF  S  ++R   GR + GV 
Sbjct: 647 PRTGGVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASDESLRPM-GRATSGVI 705

Query: 726 GISLAKGDQVISMAIV 741
           G+   + D++++M +V
Sbjct: 706 GMRFVEADELLTMEVV 721



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 95/208 (45%), Gaps = 20/208 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
           +V  +  G VK+  L+ + + R GG    G+ +RD D V    +++    +L  S    +
Sbjct: 627 LVLATRRGLVKKTKLTDFDSPRTGGV--IGINLRDGDEVVGAALINPDDDLLLVSKKAQA 684

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           + F+  ++  R     P  R  + +  +   + + + T+      E     + ++ AT  
Sbjct: 685 IRFMASDESLR-----PMGRATSGVIGMRFVEADELLTM------EVVRGGMDILVATSG 733

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++ Q  R GK    A   + R  ++   + T ++++   T  G  +R P+ 
Sbjct: 734 GYAKRTPVEEYPQQGRGGKGVLTAKITERRGNLVGALSVTPDDELFAITSEGGVIRTPVK 793

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +R    RN++GV+ + L +G  +++MA
Sbjct: 794 PVRRTTDRNTMGVKLMDLPEGVSLLAMA 821



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 15/146 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR++I  +   I +   D         EG ++ E   +L  +E  ++T++  G+ KRT  
Sbjct: 479 QRQIIKDELGAIVAKWGDERRTKIVPFEGEVNME---DLIAREDVVVTITRGGYAKRTKV 535

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG+    + + + +      F  + +D ++  ++KG + R    E+  AS
Sbjct: 536 DLYRSQRRGGKGVSGATLKQDDLVSHF---FVCSTHDWMLFFTNKGRVYRAKAYELPEAS 592

Query: 875 RATKG---VVIFSTAKDERVVSVERI 897
           R  +G     + +   DE++  V +I
Sbjct: 593 RTARGQHVANLLAFQPDEQIAQVMQI 618


>gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
          Length = 809

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 353/883 (39%), Positives = 507/883 (57%), Gaps = 86/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+  ++ + K  
Sbjct: 8   VVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKSG 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R  ++ GQGNFGS+DGDPPAA RYTE +L
Sbjct: 68  RIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAKL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVDF PNYD S +EP VL A  P +L+NG  GIAVGMATNIP HNL
Sbjct: 128 HKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV     AVIDNP+I    L+  ++GPDFPTG +I G+ GI++AY TG+G +V+R    
Sbjct: 188 GEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRARLS 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     RE IVVTEIPY VNK+++LE++A LVR+K+I  I+++RDESDR G R+V ELK
Sbjct: 248 LETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG    V++N+L+  T LQ+ F VN +AL G KP+  TL  I++ F++ R+EVV RR +Y
Sbjct: 308 RGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRRAQY 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DEV+ II+ S   ++AR  LM+R               
Sbjct: 368 DLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL +LT L    I  EL +    I+E  ++L S  
Sbjct: 413 -----------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSER 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L ++K E L +       RRT IV E   D++ ED I +EDMVV VS  G +KR+P+S
Sbjct: 462 KILEVVKNETLELAKGYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVS 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG  G  +  +D V+ LF+ STH  +LF S+ G  Y  KV  +P GS  ++
Sbjct: 522 AYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQ 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK++ +++ L+  E+++ ++     E+      V   T  G  +R  +         G I
Sbjct: 582 GKSIRSLVQLSPDEQVSAVVSV---ETFEEEREVFMITAKGLAKRLPVPALSNARTRGVI 638

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+  D ++       + ++++ T+ G  +R      R   GR + GV  + L  GD+
Sbjct: 639 AIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEPGDE 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V                 C                             G +  E  ++L 
Sbjct: 698 V-----------------C-----------------------------GAVPVEEGKDL- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L V+  G+GKR     F    R  KG     VS     G L AV  V   D ++
Sbjct: 711 ------LLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSA--RTGELAAVLSVEAKDDVM 762

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +V+ +G +I++ V +I +  R   GV + +  K + VVSV+R+
Sbjct: 763 IVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRV 805


>gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6]
 gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6]
          Length = 876

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 358/903 (39%), Positives = 514/903 (56%), Gaps = 95/903 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KCA
Sbjct: 29  VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 88

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG+YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 89  RVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 149 APLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 208

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    + NP    +  L+ L+  ++GPDFPTGA ILG  GI++AY TGRGS+ +R
Sbjct: 209 REVADGVQWYLANPAATREELLEELLRRVKGPDFPTGATILGHKGIEDAYRTGRGSVTMR 268

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+   +R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE S R G R+
Sbjct: 269 AVVNVEELQ-NRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQRL 327

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQS FS NM+A+    P   +L   ++ +V  + +V+ 
Sbjct: 328 VIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLSLDAFIRHWVTHQMDVIA 387

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  LM+           
Sbjct: 388 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLME----------- 436

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             + E+Q RAIL+++L RL  L R  I++  + L   I E   I
Sbjct: 437 --LLD-------------IDELQARAILDMQLRRLAALERQKIQDRHSELEALIAEYNAI 481

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S  R   II  EL  + D+    RRT+I+ G   DM  ED I  E+MVVT++  GYVK
Sbjct: 482 LASEERQREIISTELGEIVDKHGDDRRTKILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L   
Sbjct: 542 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEA 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+    E I  ++   + + S    Y+V ATK G V++ +L D+    
Sbjct: 602 GRDAKGQHVANLLAFQPDEHIAQVLDLKDYQQSP---YLVLATKRGLVKKTRLEDYDTNR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S +  ++ +D+ L +++GQ +RF  +  A+R   GR + GV G+
Sbjct: 659 SAGVIAINLRDGDELVSAQLVSETDDLFLVSRMGQSIRFTATDDALRPM-GRATSGVTGM 717

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              + D++                                       L  D   +G+   
Sbjct: 718 KFREDDEL---------------------------------------LAADVVTDGS--- 735

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+  V+E G+ KRT+  ++R+  R G GI+     +  E G LV    V
Sbjct: 736 -----------FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQE--ERGHLVGALIV 782

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            + D++++V + G ++R  V  +    R T GV+     K++R++ V R  E  + DE E
Sbjct: 783 QEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEDE-E 841

Query: 908 STE 910
           S E
Sbjct: 842 SAE 844


>gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1]
 gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1]
          Length = 889

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 357/902 (39%), Positives = 516/902 (57%), Gaps = 97/902 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KCA
Sbjct: 28  VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 87

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 88  RVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 147

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 148 AQLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 207

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +DNP    + L+E     I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 208 REVAEGVQWALDNPTATREELLEALLLRIKGPDFPTGATILGHKGIEDAYRTGRGSITMR 267

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE S R G R+
Sbjct: 268 AVVNVEELQG-RTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQRL 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  FS NM+A+    P   +L   ++ +VA + +V+ 
Sbjct: 327 VIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLAIVDGVPRTLSLDAFIRHWVAHQMDVIA 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  LM+           
Sbjct: 387 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAAREGLME----------- 435

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q RAIL+++L RL  L R  I++  + L   I+E   I
Sbjct: 436 ---------------LLEIDELQARAILDMQLRRLAALERQKIQDRHSELEAMIQEYNAI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S  R   II +EL  +  +    RRT I+ G   DM  ED I  E+MVVT++  GYVK
Sbjct: 481 LASEERQRQIISEELAEIVAKHGDDRRTHILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 540

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L   
Sbjct: 541 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELAEA 600

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+    E I  ++   + + +    Y+V ATK+G V++ +L D+    
Sbjct: 601 GRDAKGQHVANLLAFQPDEHIAQVLDLRDYQQAP---YLVLATKNGLVKKTRLEDYDTNR 657

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S +  ++ +D+LL ++ GQ +RF  +  A+R   GR + GV G+
Sbjct: 658 TAGVIAINLRDEDELVSAQLVSETDDLLLVSRKGQSIRFTATDDALRPM-GRATSGVTGM 716

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              + D+                             L++ D  +  S             
Sbjct: 717 KFREDDE-----------------------------LLAADVVQDGS------------- 734

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846
                      F+  V+E G+ KRT+  ++R+  R G GI+   V+K+ E  G LV    
Sbjct: 735 -----------FVFIVTEGGYAKRTAVDEYRLQGRGGLGIK---VAKLAEDRGDLVGALI 780

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI-VDE 905
           V + D++++V + G ++R  V  +    R T GV+     K++R++ V R  E  + V+E
Sbjct: 781 VQEEDEVLVVMEGGKVVRSAVTGVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEVEE 840

Query: 906 AE 907
           +E
Sbjct: 841 SE 842


>gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 898

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 351/917 (38%), Positives = 522/917 (56%), Gaps = 112/917 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC+
Sbjct: 21  IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR+
Sbjct: 81  RVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP+HN+
Sbjct: 141 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHNM 200

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +G    +++P+      L+ L+ II+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 201 REIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+ +G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 261 AVVNTEEING-RLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQRL 319

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY++T LQ  F  NM+AL    P   +L   ++ ++  + +VV 
Sbjct: 320 VLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQLQVVE 379

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L G   A+  ++EV+ +IR SP+ E AR  LM          DL
Sbjct: 380 RRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLM----------DL 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + ++Q  AIL ++L RL  L R  I +E   L   I++  DI
Sbjct: 430 LD----------------VDQIQADAILAMQLRRLAALERQKIIDEHEELLRRIEDYNDI 473

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  E+  + D+    RRT+I+    +M  ED I  E++VVTV+H GY+KR
Sbjct: 474 LAKPDRQRKIVGDEMDEIVDKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGYIKR 533

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P GS
Sbjct: 534 TKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEGS 593

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G+ + N+L L   E+I  ++   + +++    Y+V AT+ G +++ +L ++    +
Sbjct: 594 RDSKGQHVANLLQLGPDEKIQQVLSIKDYQTAS---YLVLATRSGKIKKTRLDEYDSARQ 650

Query: 671 SGKIAMKL---------DSR-------DEILSVETCTQENDILLTTKLGQCVRFPI--SA 712
            G IA++L         D         DE++    C  +++I++ ++ G  V+F      
Sbjct: 651 GGLIAVRLREIEGAFRTDKEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQT 710

Query: 713 IRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +R   GR + GV+ +      GD ++    V+    D D                     
Sbjct: 711 LRPM-GRQTAGVQAMKFRGKPGDDLLLSMDVVPQGTDSD--------------------- 748

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        +L V+ +GF KRT+  ++R+  R+G G++A 
Sbjct: 749 -----------------------------LLVVTNEGFAKRTALSEYRLQGRNGYGVKAI 779

Query: 831 DV--SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           ++   + N IGA+V    V ++DQ++ +   G +IR  V+EI+   R T+GV +    K 
Sbjct: 780 NLVEGRGNLIGAIV----VAEDDQVMAIMKSGKVIRSDVSEIKRTGRNTQGVTLAKPDKG 835

Query: 889 ERVVSVERIRESEIVDE 905
           + ++SV R  E+E  DE
Sbjct: 836 DEIISVARNAETEDQDE 852


>gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 861

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 338/908 (37%), Positives = 523/908 (57%), Gaps = 93/908 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SDE     ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   
Sbjct: 2   SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + +VK +R   + MG++HPHG++AIYD L R+AQ WS+R  +++GQGNFGS   D PAA
Sbjct: 62  ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC+L   A  ++ D+ +DTV+F+PNYDG   EP VL +R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL E+ +    +++NPD      L+A ME ++GPDFPT A+I+G  GIK+AY T
Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +RGV+ IE+  G R  IV+TE+PY VN   ++  IA+ +   ++   + + DE 
Sbjct: 242 GRGSIKMRGVTSIEEEKG-RTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ LKR A   V+LN L+++++L+S F VNM+++    P    L  +L  + 
Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ LN A  RAH+L GL  A+  LDEV+ +IR S   E AR+ LM+   
Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  L+D                + E Q + IL+++L +L  L R  I +EL  L  
Sbjct: 418 -------LLD----------------VDEEQAQHILDMQLRKLAALERQKIIDELAELEN 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   I++ EL  + D+    RRT++V    D+ DED I +E++VVT+
Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR  +  YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ + N+L    GE I  ++     +S  +  Y+V AT+ G V++++L
Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQI---QSYEDEPYLVLATRKGRVKKSRL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720
           +D+     +G IA+ L+  D ++     + E+D+LL ++ GQ +RF  +   +R   GR 
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+     D+++SM +   +D DY                                
Sbjct: 691 TAGVKGMRFKDDDELLSMCVT--SDGDY-------------------------------- 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L  +E G+GKRT+  ++    R G G+  T +    + G 
Sbjct: 717 -------------------LLVATEGGYGKRTAMEEYPAKGRGGLGV--TTLKYQPKRGK 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L+    VN+ D+I+ ++  G +IR  V++IR +SR+T GV + +      + +++R  E 
Sbjct: 756 LIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDRNVED 815

Query: 901 EIVDEAES 908
              ++AE+
Sbjct: 816 SGEEQAEA 823


>gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
 gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
          Length = 864

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 332/757 (43%), Positives = 468/757 (61%), Gaps = 47/757 (6%)

Query: 1   MTEHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+    S  EEE  I      V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+      LDAL+E I+GPDFP+GA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                          G + + E+Q  AILE++L RL  L R 
Sbjct: 420 IAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E   IL+S  R  GII +EL ++ ++    RR+++V    DM  ED
Sbjct: 454 KIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYGDDRRSKLVPFDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVT++  GY+KR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + E+     Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAV---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L      S DE++  E  + E+D+LL +K  Q +
Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLRETEDGSDDELIGAELVSAEDDLLLISKKAQSI 690

Query: 707 RFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           RF  +  A+R   GR + GV+G+S  +GD+++SM +V
Sbjct: 691 RFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVV 726


>gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Haloferax sp
 gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2]
          Length = 858

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 369/900 (41%), Positives = 521/900 (57%), Gaps = 79/900 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV  N  + K +
Sbjct: 19  VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MG YHPHG++AIYD LARMA+D+S+R  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 79  SIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LLDD+ KDTVDF+ NYD   QEP VL + +PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +I+NPD  +  LME I+GPDFPTGA I+ R  +  AY TGRG + +R    
Sbjct: 199 GEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVARNAVHKAYKTGRGRVRVRADYD 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           + +  G   +IV+ E+PYQ NKA ++E+IA+ V E +I  I D+RDES+R G RVVIELK
Sbjct: 259 VFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESERDGIRVVIELK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA A+V+ NQL     L+S F V  +AL   +P+  TL   L+ ++  R +VV RR++Y
Sbjct: 316 RGAMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKETLEHYLDHRRDVVRRRSEY 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L        D + L     
Sbjct: 375 ELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVDGEPL----- 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE Q   I+ ++L  LT +   +I  E   +   I+    IL  +S
Sbjct: 430 ---------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQS 480

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ ELL +KDE    RRT  V    ++   D I  ED+VV VS   Y+KR+P+S 
Sbjct: 481 ELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVSR 540

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGGKG  G  +++ D V+ +F+ +TH  +L F++ G VY+ K +++P  S  ARG
Sbjct: 541 FRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTARG 600

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K+ +N+L  + GE IT ++   + E      Y+   T++G ++R     F  I  +G IA
Sbjct: 601 KSAVNLLDFDDGEEITAVVNCDDLEDIEG--YLTMVTRNGYIKRTGTDRFQNILSTGIIA 658

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            KLD  DE++ VE    E D+++ T+ G  +RF    +R   GR++ GVRGI L   D V
Sbjct: 659 TKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAM-GRSARGVRGIKLEGDDVV 717

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
             +A +  A            H S                                    
Sbjct: 718 AGVAAIDEA------------HHS------------------------------------ 729

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +ILTV+E G+GKRT    +R  +R+GKG+   D+      G + A+  V + D +++
Sbjct: 730 ---WILTVTENGYGKRTDLDAYRTQSRNGKGL--IDIKANERNGPVCAINTVGEGDHLVV 784

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAESTE 910
           +SD+G ++R PV +I    R T G+++    + + V SV+ I      E+E +D+A+S E
Sbjct: 785 MSDEGQILRTPVEDISTVGRNTMGIIVMDLDEGDAVASVDVIPAAMTTEAEELDDADSVE 844


>gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 861

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 337/908 (37%), Positives = 523/908 (57%), Gaps = 93/908 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SDE     ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   
Sbjct: 2   SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + +VK +R   + MG++HPHG++AIYD L R+AQ WS+R  +++GQGNFGS   D PAA
Sbjct: 62  ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC+L   A  ++ D+ +DTV+F+PNYDG   EP VL +R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL E+ +    +++NPD      L+A ME ++GPDFPT A+I+G  GIK+AY T
Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGS+ +RGV+ IE+  G R  IV+TE+PY VN   ++  IA+ +   ++   + + DE 
Sbjct: 242 GRGSVKMRGVTSIEEEKG-RTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ LKR A   V+LN L+++++L+S F VNM+++    P    L  +L  + 
Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ LN A  RAH+L GL  A+  LDEV+ +IR S   E AR+ LM+   
Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  L+D                + E Q + IL+++L +L  L R  I +EL  L  
Sbjct: 418 -------LLD----------------VDEEQAQHILDMQLRKLAALERQKIIDELAELEE 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   I++ EL  + D+    RRT++V    D+ DED I +E++VVT+
Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR  +  YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ + N+L    GE I  ++     +S  +  Y+V AT+ G V++++L
Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQI---QSYEDEPYLVLATRKGRVKKSRL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720
           +D+     +G IA+ L+  D ++     + E+D+LL ++ GQ +RF  +   +R   GR 
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+     D+++SM +   +D DY                                
Sbjct: 691 TAGVKGMRFKDDDELLSMCVT--SDGDY-------------------------------- 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L  +E G+GKRT+  ++    R G G+  T +    + G 
Sbjct: 717 -------------------LLVATEGGYGKRTAMEEYPAKGRGGLGV--TTLKYQPKRGK 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L+    VN+ D+I+ ++  G +IR  V++IR +SR+T GV + +      + +++R  E 
Sbjct: 756 LIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDRNVED 815

Query: 901 EIVDEAES 908
              ++AE+
Sbjct: 816 SGEEQAEA 823


>gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
 gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 838

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 346/888 (38%), Positives = 507/888 (57%), Gaps = 93/888 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  EMQNSY+ YA++VI+GRA+P++RDG+KPVHRRIL+ M   G    + YVK A
Sbjct: 15  IEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYAMFDNGHRPERGYVKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +   E MG YHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   D  AA RYTECRL
Sbjct: 75  KPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGAAAMRYTECRL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTV F+PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 135 TPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    +++NP       L+A M  ++GPDFPT  +I+G  GI +AY TGRGSI +R
Sbjct: 195 NELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIVGEKGIDDAYRTGRGSIRMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           G + IE+  G R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR G R+
Sbjct: 255 GKAEIEE-EGSRQVIVITELPYQVNPDNLVSSIAEQVRDGKLKGISKIDDESSDRVGLRI 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L  +V  + +V+V
Sbjct: 314 VVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSLYVKHQIDVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA + AH+L GL  A+  LDEV+ +IR S   + AR  LM          DL
Sbjct: 374 RRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDIAREGLM----------DL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL ++L RL  L R  I ++L  L   I +  DI
Sbjct: 424 ----------------LTVDEIQANAILAMQLRRLAALERQKIIDQLAELERIIADLEDI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I++ EL  + ++    RRT+IV    D+ +ED I RE++VVT++  GY KR
Sbjct: 468 LAKPERQRAIVRDELAEIVEKYGDERRTQIVSATGDVSEEDLIARENVVVTITSTGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR QRRGGKG  G  +R +D V   F+ STH +VLFF+++G +Y+ K + LP  +
Sbjct: 528 TKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNMGRMYRLKTYELPEAT 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L    GE+I  ++     +S  +  Y+V AT  G V++++L+D+     
Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQI---QSFEDAPYLVLATAQGRVKKSRLTDYATTRS 644

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
           SG IA+ L+  D+++  + C+ E+D+LL ++ GQ +RF      +R   GR + GV G+ 
Sbjct: 645 SGLIAINLNEGDKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETLRPM-GRATAGVYGMR 703

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               DQ+++M +V                                  + DS++       
Sbjct: 704 FRGEDQLLAMTVV----------------------------------QEDSAL------- 722

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F+ T    G+GKRT   ++    R G G+ A    K    G L+    V 
Sbjct: 723 ----------FVATSG--GYGKRTPMEEYPAKGRGGLGVVAFKYQKSR--GKLIGALTVT 768

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+ ++  G +IR  VN+IR   R+T GV +    K   +V+V+R
Sbjct: 769 EDDEILAMTSAGGVIRTEVNQIRETGRSTMGVRLVDLDKGVELVAVDR 816


>gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 911

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 346/886 (39%), Positives = 504/886 (56%), Gaps = 76/886 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +T E+QNS+L YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ + KC+
Sbjct: 38  VDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRGWNKCS 97

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L+ GQGNFGS   D  AA RYTECR+
Sbjct: 98  RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRYTECRM 157

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ + TVDF+PNYD    EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 158 APLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNIPPHNL 217

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +     +++P+      L+A M  ++GPDFP GA+I+GR GI++AY TGRGS+ +R
Sbjct: 218 REVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIVGRKGIEDAYRTGRGSVTMR 277

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V +IE+    R ++VVTE+PY  N   + +KIA+LV   R+  I+D+RD+S  R G R+
Sbjct: 278 AVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSARTGQRL 337

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I LKR A   V++N LY++T LQ  F  NM+AL    P    L   ++ +V  + EV+V
Sbjct: 338 AIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVDNVPRTLRLDQFIRYWVLHQIEVIV 397

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L +A   AH+  GL  A+  LDEV+ +IR SP  E A          ++ ++ L
Sbjct: 398 RRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQA----------SAGLQKL 447

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D IDD               VQ  AIL ++L RL  L R  I +++  L   I +  DI
Sbjct: 448 LD-IDD---------------VQAAAILNMQLRRLAALERQKIIDKMKELDTLIADLKDI 491

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++R R   I+  EL  +  +    RRT+I+    D  DED I  +DMVVT++  GY KR
Sbjct: 492 LANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDDDMVVTITRGGYAKR 551

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR QRRGGKG  G  +R +D V  LF  + H  +LFF+  G VY+ K W+LP G 
Sbjct: 552 TRTDQYRPQRRGGKGVRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQLPEGG 611

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +  +LS    E+I  ++      S  +  Y+V ATK G V++  LS +    +
Sbjct: 612 RDAKGGHVAGLLSFLPDEKIAQVLAL---RSYEDAEYLVLATKQGLVKKTALSAYDSPRQ 668

Query: 671 SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
           +G IA+   +  DE++  E     +D+LL ++LGQ +RF     ++   GR + GV G+ 
Sbjct: 669 AGLIAVNFRADDDELIGAELVDASDDVLLISRLGQAIRFRADDEQMRPMGRTTSGVTGMR 728

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +GD+++SM++V                  A+R                    G  S+E
Sbjct: 729 FREGDELLSMSVV-----------------PAER--------------------GEASDE 751

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E + +  ++ TV+  GF KRT   D+R+ NR G GI+A  +   +E G LV    V 
Sbjct: 752 HADE-EDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMD--DERGHLVGGLVVT 808

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           D+D++I +   G + R  V E+    R T GV        + V+++
Sbjct: 809 DSDEVIAIKASGQVTRSSVAEVNPTGRDTMGVKFVGVRGKDEVIAI 854


>gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2]
 gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2]
          Length = 862

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 370/900 (41%), Positives = 521/900 (57%), Gaps = 79/900 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV  N  + K +
Sbjct: 19  VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MG YHPHG++AIYD LARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 79  SIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LLDD+ KDTVDF+ NYD   QEP VL + +PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +I+NPD  +  LME I+GPDFPTGA I+GR  +  AY TGRG + +R    
Sbjct: 199 GEVVDATVELIENPDATVADLMEHIKGPDFPTGANIVGRNAVHKAYKTGRGRVRVRADYD 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           + +  G   +IV+ E+PYQ NKA ++E+IA+ V E +I  I D+RDESDR G RVVIELK
Sbjct: 259 VFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESDRDGIRVVIELK 315

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A+V+ NQL     L+S F V  +AL   +P+  TL   L+ ++  R +VV RR++Y
Sbjct: 316 RGVMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKETLEHYLDHRRDVVRRRSEY 374

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L          + L     
Sbjct: 375 ELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVGGEPL----- 429

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE Q   I+ ++L  LT +   +I  E   +   I+    IL  +S
Sbjct: 430 ---------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQS 480

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ ELL +KDE    RRT  V    ++   D I  ED+VV VS   Y+KR+P+S 
Sbjct: 481 ELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVSR 540

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGGKG  G  +++ D V+ +F+ +TH  +L F++ G VY+ K +++P  S  ARG
Sbjct: 541 FRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTARG 600

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K+ +N+L  + GE IT ++   + E      Y+   T++G ++R     F  I  +G IA
Sbjct: 601 KSAVNLLDFDDGEEITAVVNCDDLEDIEG--YLTMVTRNGYIKRTGTDRFQNILSTGIIA 658

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            KLD  DE++ VE    E+D+++ T+ G  +RF    +R   GR++ GVRGI L +GD V
Sbjct: 659 TKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAM-GRSARGVRGIKL-EGDDV 716

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++    +  D           H S                                    
Sbjct: 717 VAGVAAIDED-----------HHS------------------------------------ 729

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +ILTV+E G+GKRT    +R  +R+GKG+   D+      G + A+  V + D +++
Sbjct: 730 ---WILTVTENGYGKRTDLDAYRTQSRNGKGL--IDIKANERNGPVCAINTVGEGDHLVV 784

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAESTE 910
           +SD+G ++R PV +I    R T GV++    + + V SV+ I      E E +D+A+S E
Sbjct: 785 MSDEGQILRTPVEDISTVGRNTMGVIVMDLDEGDDVASVDVIPAAMTTEGEELDDADSVE 844


>gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
 gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
          Length = 865

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 337/893 (37%), Positives = 530/893 (59%), Gaps = 90/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  +G+T V+I DE++ S+L YA++V++ RAIPD RDGLKPVHRRIL+ M ++G+    
Sbjct: 58  DEPTEGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGT 117

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD PA+ R
Sbjct: 118 QYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMR 177

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL+ + K+TVDF  NYD + +EP VL +R+PN+LV+G  GIAVGMAT+
Sbjct: 178 YTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATS 237

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A   N DI ++ L++ I+GPDFPTG VILG  GI  AY TGRG I 
Sbjct: 238 IPPHNLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVILGTKGILEAYKTGRGQIP 297

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +   ++ +I++T+IPY + K+A++E I++L +E  +  I+DLRDES+R G R
Sbjct: 298 LRSEYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIR 357

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+G + +V+LN+L++ +SL + FSVNMVAL   +P+  TL  +L  ++  ++EV+
Sbjct: 358 IVIDIKKGFNPEVVLNKLFKKSSLLTKFSVNMVALVNTQPKLLTLKDVLDVYLEHQKEVL 417

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R   + L KA+D  H+L GL +A  N+D+VV +I+ S + E A ++L+++         
Sbjct: 418 TRELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEK--------- 468

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                    Y+        LSE Q +AIL +RL RLTGL    + NE+  L  EI+    
Sbjct: 469 ---------YS--------LSEEQAKAILNMRLGRLTGLSYSKMTNEIEELRKEIQRITS 511

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYV 548
           IL S   L+  +  +L  +K++    R+T I        +E+ ++ R+D+V+T +  G+V
Sbjct: 512 ILDSEQELVNNVIADLEKIKEKYGDSRKTSIDASASSSINEEQLIPRKDIVITATVDGFV 571

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV L  Y  Q RGG G +G+     D +  +   +TH  +  FS+LG VYK + +++  
Sbjct: 572 KRVNLEEYNLQNRGGMGSTGMKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQE 631

Query: 609 GSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +++G +  N++ LN+   E+I  I+P    ES   NL+++  TK G V++  L +F 
Sbjct: 632 ADKKSKGNSFANLVELNKELNEKIIRILPVDSYES---NLHLLTVTKKGIVKKTALDNFK 688

Query: 667 QINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           ++  +G  A KL D  DE+  V   T  + +L+       V+F  S IR  A RNS+GV+
Sbjct: 689 KVRSNGIKAFKLKDEEDELKDVILVTNSDLVLVANNHKNVVKFEASKIRSQA-RNSIGVQ 747

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L               D  Y                      E+ S+   SS EG  
Sbjct: 748 GMKL---------------DGKY----------------------EVQSI--SSSKEG-- 766

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       +F+LT+ E GFGK T   ++ ++NR+ KG  + + +K    G LV   
Sbjct: 767 ------------EFVLTIGEFGFGKLTDHKEYSLTNRNAKGKTSINPAK---AGNLVFAK 811

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN  D++++++ +G  IR  ++++ + SR +KGV I    + ++++SVE I+
Sbjct: 812 FVNPTDELLIITAQGNTIRTQLDQVSVFSRNSKGVRIIKLNEGDKIISVEVIK 864


>gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
 gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
          Length = 796

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 337/884 (38%), Positives = 514/884 (58%), Gaps = 103/884 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S++I D+M++SYL+Y+++VI  RA+PD+RDGLKPVHRRIL+   ++G+  +K + K A
Sbjct: 5   IRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPHKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+A++YDA+ RMAQ ++ R  LI+G GNFGS+DGD PAA RYTE RL
Sbjct: 65  RIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++ D+ +DTVDF  N+DGS QEP +L  + PN+L+NG  GIAVGM+T+IP HNL
Sbjct: 125 TELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V ++ +P+  L+ +M+ I GPDFPTGA I+G +GIK AY TG G I +R  + 
Sbjct: 185 GEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLRARTQ 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G ++QI++ EIPY +NK  +LE IAEL+ + +I +++DLRDESD++G R+V+ELK
Sbjct: 245 IEK-KGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRIVVELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
            GA  D+ILNQLY++TSLQ+ + +NM+AL+G +P    LI ILK F+ FR +V+ RRTKY
Sbjct: 304 SGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVITRRTKY 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA++R H+L GL  A+  LD V+ IIR S + + AR++L ++               
Sbjct: 364 KLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEK--------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                      + ++E Q  AIL +RL +L G+  + +  E   L  +IK    IL++++
Sbjct: 409 -----------LVITEKQAEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKN 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++K+ELL +K++    R+T I+E      +E  D I +E + +T S+   +KR   
Sbjct: 458 ELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTS 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y    R GK          D++ D    +T  ++LFF++ G VY   V ++P     +
Sbjct: 518 SEY---ARAGKN---------DYIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLS 565

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  + + L +   ++I  ++   E+       Y+  ATK G V++    ++ Q   S  
Sbjct: 566 TGDNIKDFLKIPLSKKIVKVICLNEETKEK---YITIATKQGMVKKTIGGEY-QTTYSRI 621

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+KL+  DE++ VE      +ILL TK  + +RF   ++    GRN++G  GI LAKGD
Sbjct: 622 KAIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRFEEDSVS-DTGRNTIGSIGIKLAKGD 680

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S  +V                                   N++SV            
Sbjct: 681 EVVSFNLV----------------------------------NNNTSV------------ 694

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                  +++S+ G GKR+   ++   NR+GKG++    S    I  +  V   N +D I
Sbjct: 695 -------VSISKTGRGKRSPIEEYNPQNRNGKGLKTCGSS----IYKMAGVICANPDDYI 743

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++ +    L  V VN++   SR      + S   D+++  VE++
Sbjct: 744 LITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKL 787


>gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
 gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
          Length = 839

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 324/749 (43%), Positives = 464/749 (61%), Gaps = 39/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D D    L A+ E ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V++RRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 ------------VGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATQNG 631

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ E D+LL +  GQ +RF  +  A
Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEA 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+     D+++S+ +V
Sbjct: 691 LRPM-GRATSGVQGMRFNADDRLLSLNVV 718


>gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 874

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 325/751 (43%), Positives = 468/751 (62%), Gaps = 47/751 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S++E+    I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G  
Sbjct: 12  SAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYR 71

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP A
Sbjct: 72  PEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAA 131

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTEC+L   A  +L D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGM
Sbjct: 132 AMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGM 191

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNL EV  G    +++P+       DAL+E I+GPDFPTGA+++GR GI+ AY 
Sbjct: 192 ATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALVVGRKGIEEAYR 251

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE
Sbjct: 252 TGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDE 310

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +
Sbjct: 311 TSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHW 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM   
Sbjct: 371 VQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM--- 427

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                  G + + E+Q  AILE++L RL  L R  I  E + L 
Sbjct: 428 -----------------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQ 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+S  +   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT
Sbjct: 465 AKINEYNAILASPEKQRSIVSEELAAIVEKYGDDRRSKLVPFDGDMSIEDLIAEEDIVVT 524

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++H GYVKR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ 
Sbjct: 525 ITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRS 584

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     ARG+ + N+L+    E+I  ++   + E++    Y++ ATK G V++  
Sbjct: 585 KAYELPDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYEAA---PYLILATKGGLVKKTA 641

Query: 662 LSDFIQINRSGKIAMKL---------DSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711
           L D+      G IA+ L          + DE++  E  + E+D+LL +K  Q +RF  + 
Sbjct: 642 LKDYDSPRSGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISKKAQSIRFTATD 701

Query: 712 -AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            A+R   GR + GV+G+S  +GD+++SM++V
Sbjct: 702 EALRPM-GRATSGVKGMSFREGDELLSMSVV 731


>gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
          Length = 788

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 339/886 (38%), Positives = 520/886 (58%), Gaps = 104/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +I +EM++SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  NK Y K A
Sbjct: 3   IQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+ AIY+ LARMAQD+S+R LL++GQGNFGS+DGD PAA RYTE RL
Sbjct: 63  RIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEARL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+  +TVDF PN+DG+ +EPVVL AR PN+L+NG  GIAVGMATN+P HNL
Sbjct: 123 AKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+VD  + +ID+PD D+D L+E ++GPDFPTG  I+G  G+ +AY TG+G I +R    
Sbjct: 183 SEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTIIGYEGLVDAYRTGKGKIKVRAKYE 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +++     ++I++ EIPY+VNK+ +L+KIA LVRE ++  I+DL+DESDR+G R+VI++K
Sbjct: 243 VKE-----DRIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKVK 297

Query: 316 RGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           R  + ++++NQL  +T L+  + + N+V ++G  P    L  ++K ++  R EV+VR+  
Sbjct: 298 RDMNPEIVVNQLLEHTDLEVTYGIINLVLVDGV-PRILNLKELMKEYIRHRMEVLVRKLN 356

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++R H++ GL  A+  +DEV+  I+ S + + A                 I+L+
Sbjct: 357 YQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEA----------------TINLV 400

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      ++  SEVQ +AIL++RL +LT +  D +  E   L  +IK    +L+S 
Sbjct: 401 -----------SLGFSEVQAKAILDMRLQKLTSMEIDALIEENRKLEEDIKNMESLLASE 449

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPL 553
            +  G+IK+EL  +K+     RRT I +G ++  D ED I  E+ V+ ++  GY++R+ +
Sbjct: 450 EKRYGVIKEELFEIKNLYGDKRRTDIYKGAVERRDIEDLIPNEEAVIILTEKGYIRRLKV 509

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGGKG   +   + D   D+   + H  ++FF+  G VY  K + +P G+ ++
Sbjct: 510 DEYRAQGRGGKGVM-INYGEGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRS 568

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNL--YVVFATKHGNVRRNKLSDFIQINRS 671
           RG+A+INI+    G  +  ++       S N+   Y+ F T++G V+R  L +F     +
Sbjct: 569 RGRAIINIIP-KLGSDVIRML-------SLNDFSGYLFFITRNGIVKRTSLEEFSNPRST 620

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+  D  DE++ V+      DI L TK G+ +RF    +RV  GR + GV GI L  
Sbjct: 621 GIRAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVM-GRTARGVIGIKLQD 679

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+VIS                                         S+VE         
Sbjct: 680 GDEVIS-----------------------------------------SAVES-------- 690

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               +  ++  V   G+GKRT   ++R   R G G+R   +   N + +L+      +ND
Sbjct: 691 ----EGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNANVVKSLLT----TEND 742

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + +L++  G  IR+ + ++ +  R  +GV +      + VV+V ++
Sbjct: 743 EALLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788


>gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
 gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 880

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/899 (39%), Positives = 515/899 (57%), Gaps = 96/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 12  VEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTMYDGGYRPERSFNKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIYDAL R+ Q+W++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 72  RVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+ NYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 132 APLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    + NPD+D    L+ L++ ++GPDFP+GA ILG  GI+ AY TGRGSI  R
Sbjct: 192 REVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQILGHKGIEQAYRTGRGSITQR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R  +VVTE+PYQVN   +  KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 252 AVVSVEEIH-NRTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGIADMRDETSGRTGQRL 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A   V+LN LY++T LQ  FS NM+AL    P   +L   +  +V+ + +V+V
Sbjct: 311 VIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSLDAFVHHWVSHQMDVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A++ AH+L+GL  A+  LDEV+ +IR SP  E AR  LM+           
Sbjct: 371 RRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARNGLME----------- 419

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E Q +AIL ++L RL  L R  I++    L   I E  +I
Sbjct: 420 ---------------LLGIDEAQAQAILNMQLRRLAALERQKIQDRHAELQRLIAEYEEI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           ++S +R  GII +EL  + +     RRT ++ G   D+  ED I ++ +VVT++  GYVK
Sbjct: 465 IASEARQRGIISEELAEIVERYGDDRRTEVLYGFDGDVSMEDLIPQQQVVVTITRDGYVK 524

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGG+G  G  +R +D V   F+ +TH  +LFF++LG VY+ K +     
Sbjct: 525 RTRADEYRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTTLGRVYRVKAYEFVEA 584

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N++     ERI  +M   E  S  +  Y+V AT++G V++++L+D+    
Sbjct: 585 GRDAKGQHVANLMEFQPEERIAKVM---ELHSYQDAPYLVLATRNGLVKKSRLTDYDTNR 641

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S      ++DI+L ++ GQ +RF     A+R   GR + GV G+
Sbjct: 642 SAGVIAINLRDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDALRPM-GRATSGVTGM 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               GD+++S  +V                                   +DS V      
Sbjct: 701 KFRSGDELLSANVV----------------------------------SDDSHV------ 720

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846
                          V+E G+ KRT+  ++R+  R G GI+   V+K+ E+ G LV    
Sbjct: 721 -------------FVVTEGGYAKRTAVQEYRVQGRGGLGIK---VAKLAEVRGGLVGGLI 764

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V +ND++++V + G ++R  V+E+    R T GV+      ++ +V V R  E EI  E
Sbjct: 765 VGENDEVLVVMESGKVVRSTVSEVPARGRDTMGVIFAKPGPNDTIVGVARNAEREIEKE 823


>gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 858

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 358/894 (40%), Positives = 519/894 (58%), Gaps = 98/894 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M   G   +K + KC 
Sbjct: 23  IDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKGFSKCT 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++++YDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE ++
Sbjct: 83  RVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTETKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTV+F+ NYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 APLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G +  + NP+      ++AL++ I+GPDFPTGA ILG  GI++AY TGRGS+ +R
Sbjct: 203 REVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGAQILGVKGIQDAYRTGRGSVTMR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R  +VVTE+PYQVN   +  KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 263 AVVSVEELQG-RTCLVVTELPYQVNPDNLALKIADLVKDGKLAGIADIRDETSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+A+    P   ++ G + A+   + EV+V
Sbjct: 322 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLSIDGFITAWATHQIEVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L G   A+  LDEV+ +IR SP  E AR               L
Sbjct: 382 RRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSPTVEDAR-------------TGL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I L++             + E+Q RAIL+++L RL  L R  I +E   + +EI E   I
Sbjct: 429 IALLE-------------IDEIQARAILDMQLRRLAALERQKIIDENEEIELEIVEFKAI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           ++S  R   I+ +EL  +  +    RRT I+ G   DM  ED I  E+MVVTV+  GYVK
Sbjct: 476 IASEQRQRDIVSEELTELLAKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYVK 535

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V  LF+ +TH  +LFF++ G VY+ K + L  G
Sbjct: 536 RTRSDNYRSQHRGGKGVKGAQLRADDIVDHLFVTTTHHWLLFFTNTGRVYRAKAYELQEG 595

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N L+L  GE I  I+   + E++    Y+V AT +G V++  LS++   N
Sbjct: 596 GRDAKGQHVANFLALQPGEEIAQILDIRDYETA---TYLVLATHNGLVKKTALSEY-DTN 651

Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726
           RSG  IA+ L   DE++S       +D+LL ++ G  +RF  S  A+R   GR++ GV G
Sbjct: 652 RSGGIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIRFTASDEALRPM-GRSTSGVMG 710

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +S  + D+++S ++V   D+ Y                                      
Sbjct: 711 MSFREDDRLLSASVV--PDSGY-------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVF 845
                        +  V+E GF KRTS+  +R+  R G GI+   V+K++   G L    
Sbjct: 731 -------------VFVVTEGGFAKRTSADQYRVQGRGGLGIK---VAKLDGARGDLAGAL 774

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D+D++++V   G ++R  V E+    R T GVV    A +++++++ R  E
Sbjct: 775 MVGDHDEVLVVLASGKVVRSSVAEVPAKGRDTMGVVFARFAAEDKIIAIARNSE 828



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 15/125 (12%)

Query: 787 EERCQELKLKE----QFILTVSEKGFGKRT--SSYDFRISNRSGKGIRATDVSKINEIGA 840
           EE  Q L +++     +++  +  G  K+T  S YD   +NRSG GI A ++ + +E   
Sbjct: 614 EEIAQILDIRDYETATYLVLATHNGLVKKTALSEYD---TNRSG-GIIAVNLREGDE--- 666

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIR 898
           LV+   V + D ++LVS KG  IR   ++  +R   R+T GV+  S  +D+R++S   + 
Sbjct: 667 LVSAMLVENTDDVLLVSRKGMSIRFTASDEALRPMGRSTSGVMGMSFREDDRLLSASVVP 726

Query: 899 ESEIV 903
           +S  V
Sbjct: 727 DSGYV 731


>gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 876

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 356/902 (39%), Positives = 512/902 (56%), Gaps = 107/902 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+P + DGLKPVHRR+++GM   G   +K + KCA
Sbjct: 23  IDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVHRRVIYGMYDGGFRPDKSFSKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG+A IYDAL R+ Q WSLR  L  GQGNFGS      AA RYTE ++
Sbjct: 83  RVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALGQGNFGSPGNQGAAAPRYTETKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++ D+ ++TVDF  NYDG  QEPVVL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 SQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G +  ++NPD      L+ALME I GPDFPT A ILG  GIK+AY TGRGSI +R
Sbjct: 203 REVSAGALWALENPDATREELLEALMERIPGPDFPTAAQILGTRGIKDAYRTGRGSITMR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V +IE+  G R  +V+TE+PYQVN   +  KI +L RE +I  IAD+RDE S R G R+
Sbjct: 263 AVVNIEEIQG-RTCLVITELPYQVNPDNVAVKIGDLAREGKITGIADIRDETSGRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+A+    P   +L G +  ++  +  V+V
Sbjct: 322 VVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGVPRTLSLDGFVSHWIDHQVNVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +R H+L G   A+  LDEV+ +IR SP  + A   L +          L
Sbjct: 382 RRTRYRLRKAEERMHILRGYLKALDALDEVIALIRRSPTAQDANEGLQK----------L 431

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D IDD               +Q +AIL+++L RL  L R  I +E   L   I +  DI
Sbjct: 432 LD-IDD---------------IQAQAILDMQLRRLAALERQKIVDEATELEARIADFNDI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S +R   II+ EL  + D     RRT+I+ G   D+  ED I  E+MV+TV+  GY+K
Sbjct: 476 LASPARQRTIIRDELTGIVDRFGDDRRTQILHGFDGDVSIEDLIAEEEMVITVTRDGYIK 535

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R +D V   F+ +TH  +LFF++ G VY+ K + +P  
Sbjct: 536 RTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHHWLLFFTNKGRVYRSKAYEVPEA 595

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+L   E I  I+   +   +    Y+V AT++G V++ +L ++    
Sbjct: 596 GRDAKGQHVANLLALQPDEEIAQILDIRDYSVA---TYLVLATRNGLVKKTRLDEYDTNR 652

Query: 670 RSGKIAMKLDSR-------------DEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714
           + G IA+KL  +             DE++S     + +DILL ++LG  +RF  +  A+R
Sbjct: 653 QGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDDILLISRLGMSLRFSATDNALR 712

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR++ GV+G+   +GD ++S ++                                  
Sbjct: 713 PM-GRSTSGVKGMDFREGDSLLSASVA--------------------------------- 738

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            K+D                   +F+  V+E G+ KRT+  ++R+ NR G GI+   ++ 
Sbjct: 739 -KDD-------------------EFVFVVTEGGYAKRTAVTEYRMQNRGGLGIKVARLT- 777

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ G L     V++ D++++V   G ++R  V E+    R T GVV      D+R++++
Sbjct: 778 -DDRGVLAGGMMVSEGDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARAGGDDRIIAI 836

Query: 895 ER 896
            R
Sbjct: 837 AR 838



 Score = 44.3 bits (103), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +G++S    ++L  +E+ ++TV+  G+ KRT S ++R  +R GKG++    +++     +
Sbjct: 510 DGDVS---IEDLIAEEEMVITVTRDGYIKRTRSDNYRSQHRGGKGVKG---AQLRADDVV 563

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
              F    +  ++  ++KG + R    E+  A R  KG     + +   DE +  +  IR
Sbjct: 564 EHFFVTTTHHWLLFFTNKGRVYRSKAYEVPEAGRDAKGQHVANLLALQPDEEIAQILDIR 623

Query: 899 ESEI 902
           +  +
Sbjct: 624 DYSV 627


>gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
 gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 353/882 (40%), Positives = 510/882 (57%), Gaps = 93/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV  N  + K +
Sbjct: 15  IEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSNTAHRKSS 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I G+ MG YHPHG +AIYD L RMAQD+S+R  LI+GQGNFGS+DGDP AA RYTE R+
Sbjct: 75  SIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSMDGDPAAAMRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  NYD   QEP VL ++ PN+L+NG  GIAVGM+TNIP HNL
Sbjct: 135 DPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSSGIAVGMSTNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+VD  V ++ NPD  ++ LME I+GPDFPTG  I+GR  I +AYATGRG + +R    
Sbjct: 195 GELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIVGRDAIYSAYATGRGRLRVRAEYE 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           ++   G   +IV++E+PYQ NKA ++E+IA+ V E +I  I+DLRDESDR G R+V+ELK
Sbjct: 255 VDPEEG---RIVISELPYQENKARVVERIADDVNEGKIEGISDLRDESDRNGVRIVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+ N+L  +  L+S F V  +AL   +P+  +L   L+ ++  R EVV RR++Y
Sbjct: 312 RGANIDVVENRLLDH-HLESTFGVINLALVDGQPKVLSLKESLQHYIDHRREVVRRRSEY 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A DRAH+L G   A+ N+++VV +IR   + + AR  L Q S++            
Sbjct: 371 DLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGL-QESFD------------ 417

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q   I+ ++L  LT +   +I +E   +   I     +L+SR 
Sbjct: 418 -------------FSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDYLESVLNSRE 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L  +I  EL  VKD+ D  RRT I+E    +  ED I  ED VV ++   Y+KR+P+  
Sbjct: 465 KLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCVVVITEDDYIKRMPVEN 524

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +  Q RGGKG  G   ++ D V+ +F  ++H  +L F++ G VY+ K + +P  S  ARG
Sbjct: 525 FDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 584

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           K+ IN++ L+ GE +T ++    F +DE       +   T++G V+R   S+F  I  +G
Sbjct: 585 KSAINLIDLDDGEELTAVVSTDEFGDDEC------ITMVTRNGYVKRTCCSEFENILSTG 638

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA KL+  DE++ V+      D+++ T+ G  +RF  S +    GR++ GV GI L   
Sbjct: 639 IIAAKLEDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEM-GRSARGVNGIKLQDD 697

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V +M                          ++ D ++  SL                 
Sbjct: 698 DKVAAM--------------------------VATDDDDPRSL----------------- 714

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   LTV+E GFGKRT   ++R  +R GKG+   D+   +  G +     V D D 
Sbjct: 715 --------LTVTEHGFGKRTKLDEYRTQSRYGKGL--IDIKTDDRNGRVSTAKAVTDEDH 764

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++++S++G ++R+   ++    R TKGV I    +D+RV SV
Sbjct: 765 LVIMSEQGQIMRIRAGDVSQVGRNTKGVTIMGLEEDDRVASV 806


>gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
 gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
          Length = 922

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 359/900 (39%), Positives = 535/900 (59%), Gaps = 26/900 (2%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +      VKCA+IS
Sbjct: 1   MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+  G YHPHG + IY  L RMAQ+W+ R LL++ QGNFGS+ G PPAA RYTE R+   
Sbjct: 61  GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+DL  DTVD+ P YD    EP VL ++YPN+LVNG  GIAVGMAT+IP HNLGEV
Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               V VI+ P + ++ L++II GPDFPTG +I GR+G++  Y TGR +I++R  + I+ 
Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIICGRSGVRRGYLTGRSTILVRSHTTIDN 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRG 317
             G R +IV+ +IPYQ  +  + E+IA    E RIV I+ +R+ESD ++  R+V+ELKR 
Sbjct: 241 VKG-RNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELKRD 299

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A  D++LNQL+++T +Q  FS+ M+AL   KP   T+  ++  F+  R  V+ RRT++LL
Sbjct: 300 ADPDIVLNQLFQFTPIQDTFSIIMLALVDGKPRTLTIRDLIDEFIRHRVIVIRRRTQFLL 359

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           ++AR R H + GL +A+A++DE++RIIR S     A+  LM     AS    L   + + 
Sbjct: 360 SRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPAS---MLARALGEE 416

Query: 438 SYTI-----GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            + +     G      L+ VQ  AIL + L +L  L ++ +  E   L  EI+E L ILS
Sbjct: 417 GFELFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILS 476

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
               +  II+ ++L ++ +    RRT I +E L  ++ ED I  E MVV++SH GY+KR 
Sbjct: 477 DERNIREIIRDQMLEIEAKFGDKRRTEISLEELGYIDLEDLIEEETMVVSISHSGYIKRT 536

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P + Y+AQRRGGKG  G    D D +  LF+ STH  +LFF++ G VY +KV+ LP  S 
Sbjct: 537 PATTYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYDLPQLSR 596

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           ++RG+A++N+L L +GERI         +    + Y+V AT+ G V++ KL  + +  + 
Sbjct: 597 ESRGRAIVNLLQLEEGERIADCRAV--RDFDVEDHYLVMATRKGLVKKTKLEAYSRPMKK 654

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+KL   DE++ V      ++++L+T  G  +RF  S  R   GRNS GV+GI L  
Sbjct: 655 GIIAIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPM-GRNSSGVKGIKLDA 713

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+++ M +     AD D ++  +      +R   G  +        S    N  +   +
Sbjct: 714 DDELVGMVV-----ADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAE 768

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E    E  +   +     + +S   +R   R GKG+R  D+      G +V++  V+D D
Sbjct: 769 E----EPVVEDEASGDDDELSSGAKYRTQRRGGKGLR--DIKTTARNGRVVSIVRVDDED 822

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910
           ++++++ +G + RV   EI I  R T+GV I S  KD+ + +V R+ ++  + DE ES+E
Sbjct: 823 EVLMMTARGKIQRVSAAEISIVGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSE 882


>gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46]
 gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
 gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
          Length = 783

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 325/749 (43%), Positives = 465/749 (62%), Gaps = 40/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L K  +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KL+DF   NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A
Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+     D+++S+ +V
Sbjct: 690 LRPM-GRATSGVQGMRFNIDDRLLSLNVV 717



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++  +  EI     D       + +G++S+E   +L  +E  ++T++E G+ KRT +
Sbjct: 475 QRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 531

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  + +G + R    ++  AS
Sbjct: 532 DLYRSQKRGGKGVQGAGLKQDDIVAHF---FVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588

Query: 875 RATKG---VVIFSTAKDERVVSVERIR 898
           R  +G     + +   +ER+  V +IR
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIR 615



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 36/257 (14%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           +HG+ RR ++           IA   D  DE L      +E+ ++  T+ G   R     
Sbjct: 489 RHGDDRRTRI-----------IAADGDVSDEDL----IAREDVVVTITETGYAKRTKTDL 533

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            R    R   GV+G  L + D V    +    D      I +        R  + D  E 
Sbjct: 534 YRS-QKRGGKGVQGAGLKQDDIVAHFFVCSTHDL-----ILFFTTQGRVYRAKAYDLPEA 587

Query: 773 TSLKNDSSVEGNIS---EER-CQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSG 824
           +       V   ++   EER  Q ++++      +++  +  G  K++   DF  SNRSG
Sbjct: 588 SRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD-SNRSG 646

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVI 882
            GI A ++   +E   LV     + +D ++LVS  G  IR    +  +R   RAT GV  
Sbjct: 647 -GIVAVNLRDNDE---LVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 702

Query: 883 FSTAKDERVVSVERIRE 899
                D+R++S+  +RE
Sbjct: 703 MRFNIDDRLLSLNVVRE 719


>gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 856

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 354/897 (39%), Positives = 522/897 (58%), Gaps = 91/897 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 12  IHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG +HPHG++AIYDAL R+AQ W++R  +++GQGNFGS   D PAA RYTECR+
Sbjct: 72  RPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSPGNDGPAAMRYTECRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ D    ++     + +  L+A M+ ++GPDFPT  +I+G +GIK+AY TGRGSI +R
Sbjct: 192 KELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYGLIVGDSGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+  G R+ IV+TE+PYQVN   ++  IAE V   +I  I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-QGSRQTIVITELPYQVNPDNLVTNIAESVANGKIAGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+++ LQ+ F  NM+++    P    +  +L+ +VA + EV+V
Sbjct: 311 VITLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRIDQMLRYYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAHVL GL  A+  LDEV+ +IR SP  + AR  LM           L
Sbjct: 371 RRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEAREGLMS----------L 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                +  +Q  AIL ++L RL  L R  I +EL  + +EI +  DI
Sbjct: 421 LD----------------VDTIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + D+    RRT+IV    D+ DED I RE++VVT++  GY KR
Sbjct: 465 LAKPERQRAIVHDELQEIVDKYGDERRTQIVAATGDVTDEDLIARENVVVTITSTGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y+AQ+RGGKG  G  ++ +D V + FI STH  +LFF++ G VY+ K + LP  S
Sbjct: 525 TKVDSYKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAS 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V ATK G V++++L+D+     
Sbjct: 585 RTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATKQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++  E  +  +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ++S+++V            Y+   +      SG   + T++           EE 
Sbjct: 702 RDDDQLLSLSVVQEG--------GYLLVAT------SGGYGKRTAI-----------EEY 736

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +              G G  T    F+ + + GK I A  V + +EI A+ +V     
Sbjct: 737 APQ-----------GRGGLGVMT----FKYTPKRGKLIGAITVMEDDEIFAITSV----- 776

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
                     G +IR  VNEIR +SRAT GV + + + D  ++ ++R  E +  +EA
Sbjct: 777 ----------GGVIRTEVNEIRPSSRATMGVRLVNLSDDVELLVIDRNVEDDGEEEA 823


>gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
 gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
          Length = 919

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 363/924 (39%), Positives = 541/924 (58%), Gaps = 51/924 (5%)

Query: 6   ISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++SD  EE    K I  + I DEM++SYLTYA++VI+ RA+PD RDGLKP  RRIL  M 
Sbjct: 1   MASDNGEEPIIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVAMN 60

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            + +  +   VKCA+ISG+  G YHPHG+ +IY  L R+ QDW +R +LI+ QGNFGS+ 
Sbjct: 61  DLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGSLA 120

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G PPAA RYTE RL   A  +LDD+ ++TVDF P YD    EPVVL +++PN+LVNG  G
Sbjct: 121 GLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGSSG 180

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMAT+IP  NLGEV +    +IDNPD  +D +++++ GPDFPTG +I GR GI+  Y
Sbjct: 181 IAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIICGRYGIRKGY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           ATGR +I +R  +H E T    + IVVTEIPY   +  + EK+  LVR+ R+  I+ + D
Sbjct: 241 ATGRSTITLRARTHFE-TEKQSDVIVVTEIPYMETRDRIREKLETLVRDDRVKGISRIVD 299

Query: 302 ESDRQ--GYRVVIE--LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            +DR    ++V ++  LKR A  +V+L QL++++ LQ+ FS+ ++AL G +PE  ++  +
Sbjct: 300 LTDRNVPPWKVHLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALVGNRPETLSIKEL 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++ F+  R +V+ RRT++LL +AR R H + GL IA  ++DEV++ IR SP+   A+  L
Sbjct: 360 IQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEAKISL 419

Query: 418 MQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                +   I+  +  D   +     G      LS  Q  AI+ ++L  L  L R+ +  
Sbjct: 420 QGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLEREKLSG 479

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534
           E   L   I E L +LS    +  +I++++L ++ +    RRT I E  L D+  +D I 
Sbjct: 480 EHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSDKRRTDISEDELTDVNRDDLIT 539

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E MVVT+S  GY+KR  L+ Y+AQ RGGKG  G    +ED +  LF+ STH+ +LF ++
Sbjct: 540 EEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVSSTHSYLLFITN 599

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATK 653
            G VY +KV+ LP+    A+G+AL+N+LSL + E ++  +   E DE      ++V AT+
Sbjct: 600 RGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFDEER----FLVMATR 655

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G ++++ LS + +  + G IA+KLD  DE++     +   D+LL T  G  +RF  S  
Sbjct: 656 NGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAIRFAQSDA 715

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDER--ICYMKHMSAQRRL 764
           R   GRN+ GV+GI L+K   VI M I       +   +  Y +R    ++     Q   
Sbjct: 716 RSM-GRNTRGVKGIKLSKSGHVIGMVIADPETCLLTVCENGYGKRTPFGFIPPAEEQEEE 774

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           +    EEIT+ + DS  E N  EE  QE +                  S   +R   R G
Sbjct: 775 VLEAEEEITA-EPDSDSEENTDEE--QETR------------------SGMHYRRQRRGG 813

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KGIR    S  N  G  V + PV ++D++++V+  G + RV   EI    R T+GV + +
Sbjct: 814 KGIRDIRTSARN--GNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVIT 871

Query: 885 TAKDERVVSVERIRESEIVDEAES 908
              ++++VS+ RI  +EIVDE+E+
Sbjct: 872 LDTNDKLVSLARI-PAEIVDESEN 894


>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
 gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
          Length = 832

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 344/833 (41%), Positives = 497/833 (59%), Gaps = 56/833 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQNSY+ YA++VI+GRA+P++RDGLKPVHRR+L+     G    + YVK A
Sbjct: 16  IEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYASFDAGFRPERGYVKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   E MG YHPHG+++IYDAL R+AQ WS+R  LI+GQGNFGS   D  AA RYTE RL
Sbjct: 76  RPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDGAAAMRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF PNYDG  QEP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 136 TPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSGGIAVGMATNIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV D     ++NP+ D    L A ME+++GPDFPT A+I+G  GI++AY TGRGSI +R
Sbjct: 196 NEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGSQGIRDAYMTGRGSIRMR 255

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  IE+  G   Q++VTE+PYQVN   ++  IAE V + ++  I+ + D+ SDR G R+
Sbjct: 256 SVVDIEEVKG-TTQLIVTELPYQVNPDNLISSIAEQVNDGKLKGISKIEDQSSDRAGLRI 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI L+R   A V+LN LY+++ LQ+ F  NM+++    P    L  +++ +VA + +V++
Sbjct: 315 VITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMIRYYVAHQIDVII 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S N E AR  LM          DL
Sbjct: 375 RRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAARTGLM----------DL 424

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q  AIL ++L RL+ L R  I +EL  +  EI +  DI
Sbjct: 425 LD----------------IDEIQADAILAMQLRRLSALERQKIIDELAEIEREIADLKDI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L    R   I++ EL  V D+    RRTRI+    D+ DED I RED+VVT++  GY KR
Sbjct: 469 LERPERQRAIVRDELKEVVDKYGDDRRTRIIPAEGDVTDEDLIAREDVVVTITETGYAKR 528

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +
Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTKGRVYRAKAYELPEAN 588

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    ERI  ++     E +    Y+V AT++G V+++KL  F   NR
Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIRISGYEDAP---YLVLATRNGLVKKSKLDAF-DSNR 644

Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
           SG I A+ L   DE++    C+ ++D+LL +K GQ +RF      +R   GR + GV+G+
Sbjct: 645 SGGIAAINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETLRPM-GRQTSGVQGM 703

Query: 728 SLAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                D+++S+ +V       +     Y +R   ++  SAQ R   G    + ++++D  
Sbjct: 704 RFNDDDELLSLTVVRPDTFLLVATSGGYAKR-TDIEEYSAQGRGGKG----VLTIQHDPK 758

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             G++      ++   +  I  ++  G   RT +   R + R  KG+R  ++S
Sbjct: 759 -RGDLVGALVVDI---DSEIYAITSGGGVIRTKAKQVRKAGRQTKGVRLMNLS 807


>gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
 gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 326/738 (44%), Positives = 461/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NP+      LDALME I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 200 REVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 260 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQS F  NM+AL    P   +L   ++ +VA + EV+V
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM+           
Sbjct: 379 RRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLME----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AILE++L RL  L R  I  E + L  +I E  +I
Sbjct: 428 ---------------LLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+  EL ++ ++    R+T +V    DM  ED I  ED+VVTVS  GYVKR
Sbjct: 473 LASPVRQRGIVSAELAAIVEKYGDDRKTMLVPYDGDMSIEDLIAEEDIVVTVSRGGYVKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 533 TKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + +++    Y+V ATK G V++  L D+     
Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRDYDAA---PYLVLATKAGLVKKTSLKDYDSPRS 649

Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L  R     DE++  E  + ++D+LL +K  Q +RF  S   +R   GR + G
Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSIRFTASDDTLRPM-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 709 VKGMSFREGDELLSMNVV 726



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++S +   I     D         +G++S    ++L  +E  ++TVS  G+ KRT +
Sbjct: 479 QRGIVSAELAAIVEKYGDDRKTMLVPYDGDMS---IEDLIAEEDIVVTVSRGGYVKRTKA 535

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D+R   R GKG+R T   K+ E   +   F    +  ++  ++KG + R    E+  A 
Sbjct: 536 VDYRAQKRGGKGVRGT---KLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592

Query: 875 RATKG---VVIFSTAKDERVVSVERIRE 899
           R  +G     + +   DE +  +  IR+
Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRD 620


>gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 846

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 328/887 (36%), Positives = 522/887 (58%), Gaps = 88/887 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I +E++ S+L+YA++VI+ RA+PD+RDG+KPV RRIL+ M  +G+   +++ K A + 
Sbjct: 31  VDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMNDLGLSNQERFKKAAAVV 90

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG+ HPHG+ +IY+A+ RMAQD++ R  LI G GNFGS+DGD  AA RYTE R+ K 
Sbjct: 91  GAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDGDSAAAMRYTEARMSKI 150

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  L+ ++ ++TVDF   YDG+ +EP VL A +PN+LVNG  GIAVGMATNIP HN  EV
Sbjct: 151 AIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGIAVGMATNIPPHNFKEV 210

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A I+N +I+   LM+ ++GPDFPTG  ILG   +KN Y TG+G I IR  + I +
Sbjct: 211 INALIAFINNKNIETQDLMKYLKGPDFPTGGEILGAENLKNIYNTGKGRIFIRSKTQIIQ 270

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              ++  IV+TEIP+Q+ K++++E IA L +EK I  I DLRDES+RQG ++VI+LKR  
Sbjct: 271 NDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDESNRQGIKLVIDLKRDV 330

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +  V+LN LY+ + +Q  F+ NM+AL    P+   L  +LK F  FR  V+ R+ ++ L+
Sbjct: 331 NPHVVLNNLYKNSQVQVSFNFNMIALVKGVPKLVNLKQMLKEFFDFRINVIQRQKQFELS 390

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  + H++  L IA+ ++D VVR+I+ S N + A+ +LM++                  
Sbjct: 391 KALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEKYQ---------------- 434

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L E+Q++ ILE+ L ++T L  + I+ E   L ++I EC +I++S     
Sbjct: 435 ----------LDELQSKVILEMSLQKITNLEIEKIKQEDTELSLKISECQNIINSILLKE 484

Query: 499 GIIKQELLSVKDELDTPRRTRI-VEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            I+KQ+LL+++      RRT I +E   LD++    I +E +++T++H GY+KR+ L  Y
Sbjct: 485 QILKQDLLNLQKNFQDGRRTVINMENQDLDIDKSSLIEKEKILITITHKGYIKRLNLDTY 544

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q +GGKG  G+ M  +DFV    I STH   LFF++ G VY+ K + +   S  A+G 
Sbjct: 545 KKQNKGGKGVIGITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQIKGYEIASYSRHAKGI 604

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L+N++ + +GE +TT+      E + N  Y+V  TK G ++RN++ ++  I  +GKIA 
Sbjct: 605 PLVNLIPMAKGEFLTTLTSVT--EFNKNKDYLVLVTKKGFIKRNRIQEYANIRSNGKIAF 662

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE+L+V   + + DI+L +  G+ +R   ++IR    R S GV G+ + K +Q++
Sbjct: 663 ALKKDDEVLAVLKTSGQQDIILASSGGKSIRLKENSIRT-TNRKSSGVIGMRMDKDEQIV 721

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
             A+V H + D                                                 
Sbjct: 722 GAAVVCHPEQD------------------------------------------------- 732

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAVFPVNDNDQIIL 855
              IL V+E G+GK+T +  ++   R GKG++   ++ K   + AL  +FP   N+++IL
Sbjct: 733 ---ILVVTEFGYGKKTQASFYKPQQRGGKGVKTLKITDKKGHLVALKTIFP---NEELIL 786

Query: 856 VSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESE 901
           +S  G +IR+  N++    S+ T+G  +F    D++++++  +++ E
Sbjct: 787 ISQCGQVIRIEANKVSTTKSKNTEGNRLFKLKDDDKLLNLVVVQKQE 833


>gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
 gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
          Length = 983

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 311/710 (43%), Positives = 458/710 (64%), Gaps = 23/710 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +V + DE++ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+ M  + +  N +  K A
Sbjct: 54  VATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMYDLKIWHNGQTKKSA 113

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+G++HPHG+AA+Y+ + RMAQ +S+R  LI GQGNFG++DGD PAA RYTE R+
Sbjct: 114 RVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNIDGDGPAAMRYTEVRM 173

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ K+TVD  PNYDG+ Q P VL  R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 174 TKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSGIAVGMATNIPPHNL 233

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG VA++DNPD+ LD LM  I GPDFPTG  I+G  GI+ AY TGRG  ++R  +H
Sbjct: 234 GEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIVGNAGIREAYRTGRGRCIMRARTH 293

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY-RVVIEL 314
           IE+    R+ I V EIPY VNK+A++++IAELVR+K+I  I+++ D SD+    R+ I+L
Sbjct: 294 IEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVNDLSDKDNQVRIAIDL 353

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  + +LN L+  TSLQS F +NM+AL    P +  L  IL  F+ FR EVV RRT 
Sbjct: 354 KRDAYEEAVLNNLFERTSLQSSFPINMIALVHNHPRQLPLKEILSEFINFRREVVTRRTV 413

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL + R +A +  GL +A AN++++V +I  S N + ARR LM+  W+ + I  LI+  
Sbjct: 414 YLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLMEEPWDGTLISSLIERT 473

Query: 435 DDSSYTIG-----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           ++  + I             D   YLSE Q RAIL L+L RLT L  D+I+ +  +L   
Sbjct: 474 EE-GFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHLAGDEIQADYKALIEN 532

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  L+IL++  R+  +I+ EL+ VK+     RR+   E    +   D I  +D++VT+S
Sbjct: 533 IKGYLEILNNPVRMNEVIRGELIEVKEAFADKRRSDFTEDYGKLSKADFIAPQDVIVTLS 592

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K   +S Y AQ+RGGKGR    ++D+DF++ + + +TH +++ F+  G V+  KV
Sbjct: 593 QEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISRMAVTNTHDTLMCFTDKGRVFASKV 652

Query: 604 WRLPIGSPQA-RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661
           + LP    +  RG+ + NI  + +GE+IT ++P  E DE    N +++ AT  G +++ K
Sbjct: 653 FDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFDE----NHFIIMATVMGYIKKVK 708

Query: 662 LSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           LS F     ++N     A+ L   D ++  E  + ++D+ + +  GQC+R
Sbjct: 709 LSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSDGQCIR 758



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 49/246 (19%)

Query: 538 MVVTVSHLGYVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            ++  + +GY+K+V LS +++  QR   +    + +R+ D +    I S    V  FSS 
Sbjct: 694 FIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSD 753

Query: 596 G-------FVYKE-----------------------------KVWRLPIGS---PQARGK 616
           G       F  K+                             KV     G    P  RG 
Sbjct: 754 GQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRPSGRGS 813

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG--- 672
             + I+ L  G+   +++    DE+   +   V  T +G  +R  L+D  +++NR     
Sbjct: 814 GALRIIKLRPGQTAVSLILLSVDET---DPEAVMVTANGYGKRILLTDIPLRMNRGSSGV 870

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +D   +++ V      +D L+ T LG   R P+S +    GR + GV  +   +G
Sbjct: 871 KTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVSNL-PLPGRTAGGVIVMRPYEG 929

Query: 733 DQVISM 738
           + +I++
Sbjct: 930 ESIIAL 935


>gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
 gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
          Length = 813

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 347/878 (39%), Positives = 506/878 (57%), Gaps = 91/878 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
            T+E++ SYL Y+++VI+ RAIPD+RDGLKPV RRIL+ M ++G++ N  + K ARI GE
Sbjct: 10  FTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFKKNARIVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+AAIYDAL RM Q +++R  L+E QGNFGS+DGDPPAA RYTE R+ +   
Sbjct: 70  VMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTEARMPELGE 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           ++L D+ K+TVDFR N+DGS  EPVVL    PN+L+NG  GIAVGM TNIP HNL E+V 
Sbjct: 130 YMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPPHNLNELVA 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               +I+ P+ ++  L++ I+GPDFPTG  ++   G+K  Y TGRG I IRG   IE   
Sbjct: 190 ALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDGEGLKELYETGRGKITIRGKYRIE-DE 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGYRVVIELKR 316
           G    IV  EIPY V+KA ++E+I   V     +K+ V I D+RDESD++G R+VIEL++
Sbjct: 249 GKGTSIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGIRLVIELRK 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A+   ++N L+++T+LQS F V M  ++  KP    L G+L++F+  R  V+ RRTKY 
Sbjct: 309 NANVKKLINDLFKHTNLQSYFYVQMNVIDNEKPSLMNLKGLLQSFLDHRVNVITRRTKYE 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR RAH++ GL  AV  +D VV IIR S NP+ A + L +                 
Sbjct: 369 LEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQE----------------- 411

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
              TIG      +SE Q +AI ++RL  L+ L   ++  EL +L  +I+  +DIL  + R
Sbjct: 412 ---TIG------VSEEQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAMDILQKKER 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-DCIVREDMVVTVSHLGYVKRVPLSV 555
           LLG+IK+EL  V ++    RRT I+    D+ +E + I  ED+V+ ++  GY+K +P S 
Sbjct: 463 LLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVIVLTKWGYLKAIPSSE 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ Q RGGKG  G+ + DED V ++   +  + ++ FSS G  Y+   + +       +G
Sbjct: 523 YKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIETTLKNTKG 582

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K + N +SL++GE I +I+    D   ++   ++F TK G V+R  L +F     SG  A
Sbjct: 583 KHIANFISLDEGEEIKSIVAISLD-GDYDKDILIF-TKQGKVKRTSLREFSSARASGIRA 640

Query: 676 MKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           + L  +D ++ V      + D+L+ TKLG  + F  S +R   GR ++GV  I L +G  
Sbjct: 641 INLVDKDVVVDVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTM-GRTAMGVNSIKLREG-- 697

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                         DE I  +K    ++                                
Sbjct: 698 --------------DEVINVVKVDEGKK-------------------------------- 711

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++E+G+GKR S + ++  NR G G++   V  I+ IG +VA   V D   I+
Sbjct: 712 -----LLLITERGYGKRVSFHSYKPQNRGGIGVKT--VRDISRIGPIVATMSVEDGRDIL 764

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + + KG  IRV VN I +  R T+GV+I    +D+ VV
Sbjct: 765 IFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDDSVV 802


>gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5]
 gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5]
          Length = 839

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 322/733 (43%), Positives = 462/733 (63%), Gaps = 37/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M   G   ++ YVKC+
Sbjct: 27  IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  L++G GNFGS   DP AA RYTEC+L
Sbjct: 87  RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +DTVD + NYDG  +EP +L +R PN+L+NG  GIAVGMAT IP HNL
Sbjct: 147 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPHNL 206

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+       +++P+ D    L+AL+EI++GPDFPT  +I+G+ GI++AY TGRGSI +R
Sbjct: 207 REIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQAGIQDAYRTGRGSIRMR 266

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  R G R+
Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTGMRI 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  + EV+ 
Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQIEVIR 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA +RAH+L GL+ A+  LDEV+ +IR SP  E AR             + L
Sbjct: 387 RRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDAR-------------QGL 433

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I L+D             + EVQ  AIL+++L RL  L R  I ++L  L +EI +  DI
Sbjct: 434 IRLLD-------------IDEVQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+ +EL  +  +    RRT+IV    ++  ED I RED+VVT++  GY KR
Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSMEDLIAREDVVVTITRTGYAKR 540

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             + +YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 541 TKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E+I  I+  P  + +    Y+V ATK+G V++ +L +F     
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEIPNYQVAP---YLVLATKNGLVKKTRLEEFDSNRS 657

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++       E+D+LL +K  Q +RF  +  A+R   GR + GV G+ 
Sbjct: 658 GGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPM-GRATSGVIGMR 716

Query: 729 LAKGDQVISMAIV 741
            +  D+++++ +V
Sbjct: 717 FSGEDELLAVEVV 729



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QRR++S +  EI +   D         +G +S E   +L  +E  ++T++  G+ KRT  
Sbjct: 487 QRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 543

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG+    + + + +      F  + +D I+  ++KG + R    E+  AS
Sbjct: 544 DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 875 RATKG---VVIFSTAKDERVVSV 894
           R  KG     + +   DE++  +
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQI 623



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
           +V  +  G VK+  L  + + R GG     + +RDED +    +V+    +L  S    +
Sbjct: 635 LVLATKNGLVKKTRLEEFDSNRSGGI--IAINLRDEDELVGAVLVAPEDDLLLVSKNAQA 692

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           + F   ++  R     P  R  + +  +  +  + +  +      E     L V+ AT  
Sbjct: 693 IRFNATDEALR-----PMGRATSGVIGMRFSGEDELLAV------EVVREGLDVLVATNG 741

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++    R GK    A   + R  ++       E+++   T  G  +R P+ 
Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNGGVIRTPVK 801

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +R    RN++GV+ + L  G  ++++A
Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +++  ++ G  K+T   +F  SNRSG GI A ++   +E+   V V P    D ++LVS 
Sbjct: 634 YLVLATKNGLVKKTRLEEFD-SNRSG-GIIAINLRDEDELVGAVLVAP---EDDLLLVSK 688

Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
               IR    +  +R   RAT GV+    + ++ +++VE +RE
Sbjct: 689 NAQAIRFNATDEALRPMGRATSGVIGMRFSGEDELLAVEVVRE 731


>gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827]
 gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 344/838 (41%), Positives = 501/838 (59%), Gaps = 56/838 (6%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EMQNSY+ YA++VI+GRA+PD+RDGLKPVH R+L+ M        + Y KCAR+ G+
Sbjct: 21  LQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSMFDSRFLPERSYNKCARVVGD 80

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG++AIYDAL R+AQ W++R  LI+GQGNFGS   DP AA RYTECRL   A 
Sbjct: 81  VMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQGNDPAAAMRYTECRLTPLAM 140

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ +DTVDFR NYDG  QEP VL +R PN+L+NG  GIAVGMATNIP HNL EV +
Sbjct: 141 RMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSSGIAVGMATNIPPHNLREVAE 200

Query: 201 GCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           G V  +DNP+      L+A++  I+GPDFPT   ILG  GI++AY TGRGS+ +R V  +
Sbjct: 201 GVVWALDNPEASDEETLEAMIARIKGPDFPTYGQILGTQGIEDAYRTGRGSVKMRAVVEM 260

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
           ++ +  R  +VV+E+PYQVN   ++E IA LVR+++I  I+++ DES+R+ G R+V+ +K
Sbjct: 261 DEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGISNIADESNRRSGMRIVVTVK 320

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A V+LN LY++T LQ  F VNM++L    P    L  +++ +V  + EV+VRRTK+
Sbjct: 321 RDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDGVPRTLRLDQMIRHYVKHQIEVIVRRTKF 380

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHV  GL  A+  LD V+ +IR S   E+AR  LM+                
Sbjct: 381 RLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARSGLME---------------- 424

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                      + + EVQ+ AILE++L RL  L R  I ++L  + ++I +  DIL+   
Sbjct: 425 ----------LLSVDEVQSNAILEMQLRRLAALERQKIIDQLAEIELQIADLKDILAKPE 474

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R   I++ ELL + D+    RRT+IV    D+  ED I  ED+VVT++  GY KR    +
Sbjct: 475 RQRAIVRGELLEIVDKHGDDRRTKIVPFDGDVSMEDLIAVEDVVVTITRTGYAKRTKTDL 534

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG
Sbjct: 535 YRAQKRGGKGVQGAQLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYDLPEASRNARG 594

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + + N+L+    E I  ++     E++    Y+V AT++G V+++KLSDF      G I 
Sbjct: 595 QHVANLLAFQPDEEIAQVIQIKNYEAAP---YLVLATRNGLVKKSKLSDFDSNRSGGLIG 651

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGD 733
           + L   DE++      + +D+LL +K GQ +RF  S   +R   GR + GV+G+     D
Sbjct: 652 INLREEDELVGAVLTGEGDDLLLVSKDGQSIRFHSSDDVLRPM-GRATSGVQGMRFNSDD 710

Query: 734 QVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +++SM +V       +  D  Y +R   ++    Q R   G    + ++++D    G + 
Sbjct: 711 ELLSMGVVQEGLFVLVATDGGYAKRTP-IEDYPVQGRGGKG----VLTIQHDRR-RGRLV 764

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                ++   E  +  ++  G   RTS+ + R + R  KG+R   +  + E   L+AV
Sbjct: 765 GALIVDV---EDELYAITSAGGVIRTSAKEIRKAGRQTKGVR---LMNLGEKSTLIAV 816


>gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
 gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
          Length = 902

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 355/892 (39%), Positives = 508/892 (56%), Gaps = 94/892 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KCA
Sbjct: 29  VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 88

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG+YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 89  RVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 149 APLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 208

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    + NP    + L+E     I+GPDFPTGA ILG  GI++AY TGRGSI +R
Sbjct: 209 REVADGVQWYLANPTASREELLEELLLRIKGPDFPTGATILGHKGIEDAYRTGRGSITMR 268

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE S R G R+
Sbjct: 269 AVVNVEELEG-RTCLVVTELPYQANPDNLAIKIAELVKDGKISGIADLRDETSGRTGQRL 327

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F+ NM+A+    P   +L   ++ +VA + +V+ 
Sbjct: 328 VIVLKRDAVAKVVLNNLYKHTQLQDNFAANMLAIVDGVPRTLSLDAFIRHWVAHQMDVIA 387

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  LMQ           
Sbjct: 388 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLMQ----------- 436

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             + E+Q RAIL+++L RL  L R  I++    L   I E   I
Sbjct: 437 --LLD-------------IDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNSI 481

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S  R   II  EL  +  +    RRT+I+ G   DM  ED I  E+MVVT++  GYVK
Sbjct: 482 LASEERQREIISTELSEIVAKHGDDRRTKILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L   
Sbjct: 542 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEA 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+    E I  ++   + + +    Y+V ATK G V++ +L D+    
Sbjct: 602 GRDAKGQHVANLLAFQPDEHIAQVLDLRDYQHAP---YLVLATKRGLVKKTRLEDYDTNR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S +  ++ +D++L +++GQ +RF  +  A+R   GR + GV G+
Sbjct: 659 SAGVIAINLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTATDDALRPM-GRATSGVTGM 717

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              + D+                             L++ D      +K+ S        
Sbjct: 718 KFREDDE-----------------------------LLAADV-----VKDGS-------- 735

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F+  V+E G+ KRT+  ++R+  R G GI+     +  E G LV    V
Sbjct: 736 -----------FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQE--ERGHLVGALIV 782

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + D++++V + G ++R  V  +    R T GV+     K++R++ V R  E
Sbjct: 783 QEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEVARNSE 834


>gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216]
 gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216]
          Length = 910

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 356/897 (39%), Positives = 511/897 (56%), Gaps = 101/897 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G   ++ Y KCA
Sbjct: 15  VEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYSKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+ +IYDAL R+AQDWSLR  L++GQGNFGS   DP AA RYTECR+
Sbjct: 75  RVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSPGNDPAAAPRYTECRM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 APLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G   ++DNPD      L AL+  I+GPDFPTGA+ILG  GI +AY TGRGSI +R
Sbjct: 195 REVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHRGISDAYRTGRGSITMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R  +VV+E+PYQVN   + E IA LVR+ R+  IAD++D  S + G R+
Sbjct: 255 AVVEVEEIQG-RTCLVVSELPYQVNPDNLAENIANLVRDGRLTGIADVQDHTSGKTGQRL 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI L+R A A V+LN LY++T LQ+ F  NM+AL    P    +   LK ++A + +V+V
Sbjct: 314 VIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIHAFLKHWIAHQLDVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L  L  A+  LDEV+ +IR SP  E+AR  LM            
Sbjct: 374 RRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARDGLM------------ 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q+RAILE++L RL  L R  I +E + L   I +  DI
Sbjct: 422 --------------GLLEIDEIQSRAILEMQLRRLAALERQRITDEYDELMRMIGDFNDI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL  + +     R+T+I+    DM  ED I  ED+VVTV+  GY KR
Sbjct: 468 LARPERQRQIVGDELAELVERYGDERKTQILPFEGDMTVEDLIPVEDVVVTVTRGGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YRAQRRGG+G  G  +R++D V   F  +TH  +LFF++LG VY+ K + LP G 
Sbjct: 528 TKTDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGG 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              RG+ + N+L+   GERI  ++   + E +    Y+V AT+ G V++ +LS++     
Sbjct: 588 RDGRGQHVANLLAFQPGERIVAVLDIEDYEQAP---YLVLATRGGIVKKTRLSEYDSNRS 644

Query: 671 SGKIAMKLDSR----------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GR 719
            G IA+ L S           DE+ +    +++ D+ L ++ G  VRF  +   +   GR
Sbjct: 645 GGLIAINLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMSVRFEATDENLRPMGR 704

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV G+     D++++MA+                                   ++D 
Sbjct: 705 ATSGVTGMKFRGEDELLAMAVA----------------------------------RDDL 730

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V                 F++T  E G+ KRT    +R   R G GI+   +++  E G
Sbjct: 731 FV-----------------FVVT--ELGYAKRTKIEHYRKQGRGGLGIKVAKLTE--ERG 769

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            LV    V+++D++++V   G ++R  V+E+    R T GV        +R++++ R
Sbjct: 770 DLVGALTVSEDDEVLVVMQAGRVVRSRVDEVPDKGRDTMGVTFARPETGDRILAITR 826


>gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379]
 gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
          Length = 880

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 321/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 28  VEPVQLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 87

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 88  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 147

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 148 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 207

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++P+       DAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 208 REVAAGAQWYLEHPEASHEELQDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 267

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 268 AVVAVEEIQG-RQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+V
Sbjct: 327 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 387 RRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------------ 434

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L    I  E + L  +I E  +I
Sbjct: 435 --------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S ++  GI+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 481 LASPAKQRGIVSEELAAIVEKFGDDRRSKLVPFEGDMSIEDLIAEEDIVVTISRSGYVKR 540

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 541 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 600

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + E+     Y++ ATK G V++  L D+     
Sbjct: 601 RDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPRS 657

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +  A+R   GR + G
Sbjct: 658 GGVIAINLREMPDGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 716

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 717 VKGMSFREGDELLSMNVV 734



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           EG++S    ++L  +E  ++T+S  G+ KRT + D+R   R GKG+R T   K+ E   +
Sbjct: 514 EGDMS---IEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVRGT---KLREDDIV 567

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
              F    +  ++  ++KG + R    E+  A R  +G     + +   DE++  +  IR
Sbjct: 568 DHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIR 627

Query: 899 ESEIV 903
           + E V
Sbjct: 628 DYEAV 632


>gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183]
 gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183]
          Length = 839

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 349/899 (38%), Positives = 501/899 (55%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  E+Q SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M   G   ++ Y KCA
Sbjct: 15  IEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG++AIYD L R+AQ W++R  L++G GNFGS   DP AA RYTECRL
Sbjct: 75  RVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSRGNDPAAAMRYTECRL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDF PNYDG   EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 APLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSAGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV +G    +DN  +     LDAL+E I+GPDFPT A+I+GR GI++AY TGRGSI +R
Sbjct: 195 REVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIVGRKGIEDAYRTGRGSITMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  IE+  G R  +VVTE+PYQVN   +  KIAELV+E ++  IAD+RDE S R G R+
Sbjct: 255 AVVEIEEIQG-RTCLVVTELPYQVNPDNLALKIAELVKEGKLEGIADVRDETSGRTGQRL 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LK+ A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  + +V+V
Sbjct: 314 VIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQFIRYWVDHQIDVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++LL KA +RAH+L  L  A+  ++EV+ +IR S + + A+  LM            
Sbjct: 374 RRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQEGLM------------ 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + EVQ +AIL+++L +L  L R  I +E   L  EI +  +I
Sbjct: 422 --------------ALLQIDEVQAQAILDMQLRKLAALERQAITDEYERLMAEIADFNEI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+++EL  + +     RRT+IV    D+  ED I  ED+VVT++  GY KR
Sbjct: 468 LASPERQRRIVREELEPIVERYGDERRTQIVPFDGDVSYEDLIPEEDIVVTITRGGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP G 
Sbjct: 528 TRVDAYREQKRGGKGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAYELPEGG 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG+ + N+L+    E I  ++   + + +    Y+V AT+ G V++  L DF     
Sbjct: 588 RDSRGQHVANMLAFQPEEHIAEVLDLRDYDVA---PYLVLATRQGKVKKTALKDFDSPRT 644

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
            G IA+ L   DE+++       +D+LL     Q +RF     ++   GR + GV G+  
Sbjct: 645 GGIIAINLAEGDEVIAARLVFPTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRF 704

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G  ++ M ++   D D                                          
Sbjct: 705 DTG-HLLDMHVIRDGDED------------------------------------------ 721

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +E G+ KRT    + +  R GKG+    +  +   G LV    V  
Sbjct: 722 ----------VLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKI--VQARGKLVGALMVRP 769

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            D +  ++  G +IR    EI+ + R T GV + + A+ + VV++ R  ES + +E E+
Sbjct: 770 EDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNLAEGDSVVAIARNVESSMEEEPEA 828


>gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 875

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 323/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 23  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC++
Sbjct: 83  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF+ NYDG  QEP VL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NP+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 203 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+P+Q N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 263 AVVAVEEIQG-RQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQS F  NM+AL    P   ++   ++ +V  + EV+V
Sbjct: 322 VVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  ++EV+ +IR S   E AR  LM            
Sbjct: 382 RRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSNTVEIAREGLM------------ 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L    I  E + L  +I E  +I
Sbjct: 430 --------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  +   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 476 LASPEKQRQIVSEELAAIVDKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVKR 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 536 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 595

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + E++    Y+V ATK G V++  L D+     
Sbjct: 596 RDARGQHVANLLAFQPDEQIAQILAIRDYEAA---PYLVLATKGGLVKKTSLKDYDSPRS 652

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      + DE++  E  + E+D+LL +K  Q +RF  +  A+R   GR + G
Sbjct: 653 GGVIAINLRETESGADDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 711

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 712 VKGMSFREGDELLSMNVV 729


>gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
 gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
          Length = 837

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 331/893 (37%), Positives = 527/893 (59%), Gaps = 75/893 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T   I+ E++NS++ YA++VI+ RAIPD+RDG KPVHRR+L+    MG+  +K Y K A
Sbjct: 19  VTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHDKPYKKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A Y+ + RMAQD+S+R +L++G GNFGS+DGD  AA RYTE RL
Sbjct: 79  RLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAMRYTEARL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ K+TVDF  NYDGS  EP VL A +PN+L NG  GIAVGMATNIP HNL
Sbjct: 139 SKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMATNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  + +  N D  ++ + ++++GPDFPT A I+G  GI + + TGRGSI IR  + 
Sbjct: 199 SEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIVGTDGINSYFETGRGSITIRSKAE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I  +   + QI++ EIPY VNK+ +++KI +LV+ + I  IADLRDES R+G R+VIE+K
Sbjct: 259 IIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGIRIVIEVK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +    +V+LN+L++ T LQS FSVNM+AL   +P+   +  +L+ ++  +  V+VR+TK+
Sbjct: 319 KDTVPEVLLNKLFKMTPLQSNFSVNMLALVDKEPKLLNIKEVLQEYLKHQVNVLVRKTKF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +R H+L GL IAV N+D V++IIR S + + A ++L+ +               
Sbjct: 379 ELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITK--------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+++Q +AIL++RL  L+ L R  I  EL  +   I+E   IL S  
Sbjct: 424 -----------YKLTKIQAKAILDMRLRSLSNLERLKIEQELKEVKALIQELSGILKSSD 472

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + + II +EL+++K+     R+T I+ G+   ++DED I  E++V++ S   Y+KR+ + 
Sbjct: 473 KQMDIISKELINLKNTYGDERKTEILYGVSASIDDEDLIPVENIVISRSANNYLKRISIE 532

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ QRRGG G  GV   ++D V D+   +THT +LFF+  G VY+ +   +P GS Q++
Sbjct: 533 TYKIQRRGGVGVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIPPGSRQSK 592

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   +N++++ + E+I  ++P  ED   ++  ++  AT  G V+R  LS++  I  +GK 
Sbjct: 593 GVPALNLMNIEKNEKILVMLPV-ED---YSKGFLFLATTKGIVKRTSLSEYNSIKSNGKR 648

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D++LS      +++I L    G   RF    +RV  GR + GV+GI+      
Sbjct: 649 AITLREGDQLLSAFLTRGKDEIYLGASNGLLTRFNEQDVRVM-GRTASGVKGIN------ 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                I + A+    ++I    ++      +SGD                          
Sbjct: 702 -----IEVKAEGRNKKKIDTSINVVGASSSLSGD-------------------------- 730

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL++ EKG GK + + ++R++ R  KG+    + + ++ G L+    V  +++I+
Sbjct: 731 ----LILSIGEKGLGKLSEAENYRLTRRGSKGV--VTLKQNDKTGKLIFSSAVKGDEEIL 784

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +V+  G +IR  +  +R+  R+T GV +      E+++S    ++ E  +E E
Sbjct: 785 IVTSSGKIIRQELKNLRVIGRSTSGVTLVKLQPKEKIISAAVYKKEEDENEIE 837


>gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
 gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
          Length = 952

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 344/906 (37%), Positives = 518/906 (57%), Gaps = 39/906 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DEMQNSYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +  N    KC+
Sbjct: 21  IAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMNDLNLGPNGSRTKCS 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I+GE MG YHPHG+ AIY  L RMAQDW++R +LI+ QGNFGS+ G PPAA RYTE RL
Sbjct: 81  KITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLAGLPPAAHRYTEARL 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+  +TVDF P YD    EP VL +R+PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 141 SPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSGIAVGMATSIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV +    VID P+  +D + +++ GPDFPTG VI G+ G +  Y+TGR +I +R  +H
Sbjct: 201 TEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVICGQFGTRQGYSTGRSTITLRAKTH 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ--GYRVVIE 313
            + T    + IVVTEIPY   +  + EK+  LV+++R+  IA + D +DR+   ++V ++
Sbjct: 261 FD-TEKQSDVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVVDLTDRKIPNWQVHLQ 319

Query: 314 --LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LNQLY+Y+ LQ+ FS+ ++AL G +P+  ++  +L  F+  R  V+ R
Sbjct: 320 IVLKRDADKEVVLNQLYKYSPLQTTFSIILLALVGNRPQLLSIKDMLLEFIRHRVTVIRR 379

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L++AR R H + G+ IA  N+DEV+  IR SP+   A+  L        DIK   
Sbjct: 380 RTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKNRL-------RDIKVPA 432

Query: 432 DLI---------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++I          +     G+     LS  Q  AI+ ++L  L  L R+ + +E   L  
Sbjct: 433 EMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKLGDEHRKLLE 492

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVT 541
           EI ECL +LS  + +   +++E+  ++ +    RRT I E  L D+  ++ I    MVVT
Sbjct: 493 EIDECLHLLSDEAHIRAAVREEMDDLQRKYPDKRRTEISEIELTDVNKDELIAEAPMVVT 552

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GY+KR  L+ Y+AQ RGG+G +G    +ED +  +F+ STH+ +LFF++LG VY +
Sbjct: 553 LTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVASTHSYLLFFTNLGRVYWQ 612

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP+ +  A+G+AL+N+LSL  GE +   +   E +   +  +++ ATK G V++  
Sbjct: 613 KVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFD---DERFLMMATKKGVVKKTS 669

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS + +  R G IA+KLD  DE++ V     E+D++++T  G  +RF     R   GRN+
Sbjct: 670 LSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRFNHDDARAM-GRNT 728

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+SL K D V+ M +        DE++C +           G            + 
Sbjct: 729 RGVKGVSLGKDDHVVGMVVA-------DEQMCLLTACENG----YGKRTPFGFGGASDAE 777

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           E  + ++     +         S        S+  +R   R GKG+R  D+      G  
Sbjct: 778 EAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKRGGKGLR--DIRTTERNGKA 835

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V +  V D+D ++++S  G + R+   +I    R T+GV I      +R+V + RI    
Sbjct: 836 VDILAVADDDDVLIISSAGKIQRIRAADISQVGRNTQGVRIMRMGDGDRLVGLARIPAEI 895

Query: 902 IVDEAE 907
            VD  E
Sbjct: 896 NVDSDE 901


>gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
 gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
          Length = 839

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 317/733 (43%), Positives = 461/733 (62%), Gaps = 37/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M   G   ++ YVKC+
Sbjct: 27  IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  L++G GNFGS   DP AA RYTEC+L
Sbjct: 87  RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +DTVD + NYDG  +EP +L +R PN+L+NG  GIAVGMAT IP HNL
Sbjct: 147 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPHNL 206

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+       +++P+ D    L+AL+EI++GPDFPT  +I+G++GI++AY TGRGSI +R
Sbjct: 207 REIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQSGIQDAYRTGRGSIRMR 266

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  R G R+
Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTGMRI 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  + EV+ 
Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQIEVIR 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA +RAH+L GL+ A+  LDEV+ +IR SP  E AR+ L++           
Sbjct: 387 RRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIR----------- 435

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL+++L RL  L R  I ++L  L +EI +  DI
Sbjct: 436 ---------------LLEIDEIQATAILDMQLRRLAALERQRILDDLAKLELEIADLKDI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+ +EL  +  +    RRT+I+    ++  ED I RED+VVT++  GY KR
Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDERRTKIIPFDGEVSMEDLIAREDVVVTITRTGYAKR 540

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             + +YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 541 TKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E+I  I+  P  + +    Y+V ATK+G V++ +L +F     
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEIPNYQVAP---YLVLATKNGLVKKTRLEEFDSNRS 657

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++        +D+LL +K  Q +RF  +  A+R   GR + GV G+ 
Sbjct: 658 GGIIAINLRDEDELVGAALVGPTDDLLLVSKNAQAIRFNATDEALRPM-GRATSGVIGMR 716

Query: 729 LAKGDQVISMAIV 741
            +  D++++M +V
Sbjct: 717 FSDEDELLAMEVV 729



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QRR++S +  EI +   D         +G +S E   +L  +E  ++T++  G+ KRT  
Sbjct: 487 QRRIVSEELGEIVAKWGDERRTKIIPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 543

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG+    + + + +      F  + +D I+  ++KG + R    E+  AS
Sbjct: 544 DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 875 RATKG---VVIFSTAKDERVVSV 894
           R  KG     + +   DE++  +
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQI 623



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 20/208 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
           +V  +  G VK+  L  + + R GG     + +RDED +    +V     +L  S    +
Sbjct: 635 LVLATKNGLVKKTRLEEFDSNRSGGI--IAINLRDEDELVGAALVGPTDDLLLVSKNAQA 692

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           + F   ++  R     P  R  + +  +  +  + +  +      E     L V+ AT  
Sbjct: 693 IRFNATDEALR-----PMGRATSGVIGMRFSDEDELLAM------EVVREGLDVLVATNG 741

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++    R GK    A   + R  ++       ++++   T  G  +R P+ 
Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVK 801

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +R    RN++GV+ + L  G  ++++A
Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829


>gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
          Length = 873

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 332/750 (44%), Positives = 466/750 (62%), Gaps = 46/750 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + +E+ +  I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G  
Sbjct: 11  AEEEQPQMRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYR 70

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K + KCAR+ G+VMG YHPHG+ +IYDAL R+AQ WS+R+ L++  GNFGS   DP A
Sbjct: 71  PEKGFYKCARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAA 130

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTEC++   +  +L D+ +DTVDF+ NYDG  QEP VL AR PN+LVNG  GIAVGM
Sbjct: 131 AMRYTECKMAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNL EV  G    +++P+      LDAL+E I+GPDFPTGA+++GR GI+ AY 
Sbjct: 191 ATNIPPHNLREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVVGRKGIEEAYR 250

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ RI  IAD+RDE
Sbjct: 251 TGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGRIGGIADVRDE 309

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +
Sbjct: 310 TSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHW 369

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EVVVRRT++ L KA +RAH+L GL  A+ ++DEV+ +IR S   E AR  LM   
Sbjct: 370 VTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVEIARAGLM--- 426

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                  DL+                 + EVQ  AILE++L RL  L R  I  E   L 
Sbjct: 427 -------DLLS----------------IDEVQANAILEMQLRRLAALERQKILQEHAELQ 463

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+S  +   I+ +EL  + ++    RR+++V    DM  ED I  ED+VVT
Sbjct: 464 EKINEYNAILASPEKQRRIVSEELAVIVEKYGDDRRSQLVPFDGDMSIEDLIAEEDIVVT 523

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GYVKR     YR+Q+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ 
Sbjct: 524 ISRGGYVKRTRTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRA 583

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     ARG+ + N+L+    ERI  I+   + E++    Y+V ATK G V++  
Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDERIAQILAVRDYEAA---PYLVLATKAGLVKKTP 640

Query: 662 LSDFIQINRSGKIAMKL--------DSRDEILSVETCTQENDILLTTKLGQCVRFPIS-- 711
           L D+      G IA+ L         + DE++  E  +  +D+LL +K  Q +RF  +  
Sbjct: 641 LKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAADDLLLISKKAQSIRFTATDE 700

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           A+R   GR + GV+G+S  +GD+++SM +V
Sbjct: 701 ALRPM-GRATSGVKGMSFREGDELLSMNVV 729


>gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 876

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 327/738 (44%), Positives = 461/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 20  IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC+L
Sbjct: 80  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  +L D+ ++TVDF+ NYDG  QEP VL +R+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 140 MTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++PD      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 200 REVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 260 AVVEVEEIH-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM          DL
Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLM----------DL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AILE++L RL  L R  I  E + L  +I E   I
Sbjct: 429 ----------------LQIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 473 LASPERQRAIVSEELAALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 533 TKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAG 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + E++    Y+V ATK G V++  L D+     
Sbjct: 593 RDARGQHVANLLAFQPDEQIAQILAIRDYEAAP---YLVLATKAGLVKKTALKDYDSPRS 649

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      S DE++  E  + E+D+LL +K  Q +RF  +  A+R   GR + G
Sbjct: 650 GGVIAINLRETEDGSDDELIGAELVSSEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S    D+++SM +V
Sbjct: 709 VKGMSFRADDELLSMNVV 726


>gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 854

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 324/749 (43%), Positives = 466/749 (62%), Gaps = 40/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                  ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YD-SASSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG  
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSR 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATN P HNLGE+ +     ++N + D     +A+ME ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + ++Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDDIQAQAILDMQLRRLAALERQKIVD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV     + DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +Y +Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712
            V+++KLSDF   NRSG I A+ L   DE++    C+ E+D+LL +   Q +RF  +  A
Sbjct: 631 LVKKSKLSDF-DSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEA 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV+G+   + D+++S+ +V
Sbjct: 690 LRPM-GRATSGVQGMRFNEDDRLLSLNVV 717


>gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
 gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
          Length = 840

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 320/733 (43%), Positives = 458/733 (62%), Gaps = 37/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M   G   ++ YVKC+
Sbjct: 28  IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 87

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  L++G GNFGS   DP AA RYTEC+L
Sbjct: 88  RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTECKL 147

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +DTVD + NYDG  +EP +L +R PN+L+NG  GIAVGMAT IP HNL
Sbjct: 148 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPHNL 207

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+       ++NPD+D    LDAL+EI++GPDFPT  +I+G   I++AY TGRGSI +R
Sbjct: 208 REIGAAVQWCLENPDVDEATTLDALIEIVKGPDFPTHGLIVGTQAIQDAYRTGRGSIRMR 267

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  R G R+
Sbjct: 268 AVVEVEEDKRGRPCLVVSELPYQVNPDNLAERIAELIKEGKLGGIADIRDESSGRTGMRI 327

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  + EV+ 
Sbjct: 328 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQIEVIR 387

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA +RAH+L GL+ A+  LDEV+ +IR SP  E AR+ L++           
Sbjct: 388 RRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIR----------- 436

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL+++L RL  L R  I ++L  L +EI +  DI
Sbjct: 437 ---------------LLEIDEIQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDI 481

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+ +EL  +  +    RRT+IV    ++  ED I RED+VVT++  GY KR
Sbjct: 482 LAKPERQRRIVSEELGEIVAKWGDERRTKIVPFDGEVSMEDLIAREDVVVTITRTGYAKR 541

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             + +YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 542 TKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEAS 601

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E+I  I+  P  + +    Y+V ATK+G V++ +L +F     
Sbjct: 602 RVAKGQHVANLLAFQADEQIAQIIEIPNYQVAP---YLVLATKNGLVKKTRLEEFDSNRS 658

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++        +D+LL +K  Q +RF  +  A+R   GR + GV G+ 
Sbjct: 659 GGVIAINLRDEDELVGAALVAPSDDLLLVSKNAQAIRFNATDEALRPM-GRATSGVIGMR 717

Query: 729 LAKGDQVISMAIV 741
            +  D +++M +V
Sbjct: 718 FSDEDVLLAMEVV 730



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QRR++S +  EI +   D         +G +S E   +L  +E  ++T++  G+ KRT  
Sbjct: 488 QRRIVSEELGEIVAKWGDERRTKIVPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 544

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG+    + + + +      F  + +D ++  ++KG + R    E+  AS
Sbjct: 545 DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWMLFFTNKGRVYRAKAYELPEAS 601

Query: 875 RATKG 879
           R  KG
Sbjct: 602 RVAKG 606



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 22/209 (10%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
           +V  +  G VK+  L  + + R GG     + +RDED +    +V+    +L  S    +
Sbjct: 636 LVLATKNGLVKKTRLEEFDSNRSGGV--IAINLRDEDELVGAALVAPSDDLLLVSKNAQA 693

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATK 653
           + F   ++  R P+G      +A   ++ +    E +   M     E     L V+ AT 
Sbjct: 694 IRFNATDEALR-PMG------RATSGVIGMRFSDEDVLLAM-----EVVREGLDVLVATN 741

Query: 654 HGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R GK    A   + R  ++       ++++   T  G  +R P+
Sbjct: 742 GGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIHPDDELFAITSNGGVIRTPV 801

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             +R    RN++GV+ + L  G  ++++A
Sbjct: 802 KPVRRTRDRNTMGVKLMDLPDGVTIVAIA 830


>gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
 gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
          Length = 883

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 324/742 (43%), Positives = 464/742 (62%), Gaps = 43/742 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I SV +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ +
Sbjct: 23  EHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRAF 82

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC+R+ G+VMGK+HPHG+ AIYDAL R+ QDWSLR  L+ GQGNFGS   DP AA RYT
Sbjct: 83  SKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYT 142

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+   A  ++ D+ KDTVDF+ NYDG  QEP +L +R+PN+LVNG  GIAVGMATNIP
Sbjct: 143 ECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPSRFPNLLVNGSSGIAVGMATNIP 202

Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV +G    +D+PD      LD+L+ II+GPDFPTGA ILG  GI++AY TGRGS
Sbjct: 203 PHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDFPTGATILGHRGIEDAYRTGRGS 262

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306
           I +R + ++E+   +R  +VVTE+PYQVN   +  KIAELV++ R+  IAD+RDE S R 
Sbjct: 263 ITMRAIVNVEEIQ-NRICLVVTELPYQVNPDTLALKIAELVKDGRVQGIADIRDETSGRT 321

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   ++   ++ +VA + 
Sbjct: 322 GQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRTLSIDAFIRHWVAHQL 381

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRT +LL +A  + H+  G   A+  LD+V+ +IR SP+ + AR            
Sbjct: 382 EVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALIRRSPDADRAR------------ 429

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            + LI+++D             + E+Q  AIL ++L RL  L R +I +E + L  EI E
Sbjct: 430 -QGLIEMLD-------------IDEIQATAILNMQLRRLAALQRQEIIDEHDKLEKEILE 475

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+  SR   I+  EL  +  +    RRT ++    ++  ED I  E+MVVT++  G
Sbjct: 476 YQDILAKESRQRQIVSDELNELVAKYGDERRTTVLPHAGEVSMEDLIAEEEMVVTITRGG 535

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y KR     YRAQ+RGGKG  G  +R++D V   F+ +TH  +LFF++LG VY+ K + L
Sbjct: 536 YAKRTRSDNYRAQKRGGKGVRGAQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYEL 595

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G   A+G+ + N+L+   GE+I  ++   + + +    Y+V AT+ G V++ +LS++ 
Sbjct: 596 PEGGRDAKGQHVANLLAFQPGEKIAQVLDLRDYDVAD---YLVLATRRGTVKKTRLSEYD 652

Query: 667 QINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719
                G IA+ L        DE++S       +D++L ++ GQ +RF  S  A+R   GR
Sbjct: 653 SNRSGGVIAINLREDADGQPDELVSARLVDATDDLILVSRKGQSIRFTASDEAMRPL-GR 711

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
            + GV G+   + D++++M +V
Sbjct: 712 ATSGVTGMKFREDDELLAMDVV 733



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 74/152 (48%), Gaps = 9/152 (5%)

Query: 759 SAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           S QR+++S +  E+ +   D   ++V  +  E   ++L  +E+ ++T++  G+ KRT S 
Sbjct: 484 SRQRQIVSDELNELVAKYGDERRTTVLPHAGEVSMEDLIAEEEMVVTITRGGYAKRTRSD 543

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++R   R GKG+R    +++ E   +   F    +  ++  ++ G + R    E+    R
Sbjct: 544 NYRAQKRGGKGVRG---AQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGR 600

Query: 876 ATKG---VVIFSTAKDERVVSVERIRESEIVD 904
             KG     + +    E++  V  +R+ ++ D
Sbjct: 601 DAKGQHVANLLAFQPGEKIAQVLDLRDYDVAD 632


>gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 855

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 321/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 3   VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC++
Sbjct: 63  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 123 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++P+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 183 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+P+Q N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 243 AVVAVEEIQG-RQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+V
Sbjct: 302 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 362 RRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L    I  E + L  +I E  +I
Sbjct: 410 --------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S ++   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 456 LASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 516 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + E+     Y++ ATK G V++  L D+     
Sbjct: 576 RDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPRS 632

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +  A+R   GR + G
Sbjct: 633 GGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 691

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 692 VKGMSFREGDELLSMNVV 709


>gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 879

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 321/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 27  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC++
Sbjct: 87  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 147 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 206

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++P+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 207 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 266

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+P+Q N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 267 AVVAVEEIQG-RQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 325

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+V
Sbjct: 326 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 385

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 386 RRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------------ 433

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L    I  E + L  +I E  +I
Sbjct: 434 --------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 479

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S ++   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 480 LASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVKR 539

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 540 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 599

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + E+     Y++ ATK G V++  L D+     
Sbjct: 600 RDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPRS 656

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +  A+R   GR + G
Sbjct: 657 GGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 715

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 716 VKGMSFREGDELLSMNVV 733


>gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977]
 gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 839

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 317/733 (43%), Positives = 455/733 (62%), Gaps = 37/733 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K A
Sbjct: 17  IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL
Sbjct: 77  RSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL
Sbjct: 137 TPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNL 196

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+ +     +DN + D    L A+ E I GPDFPT  +I+G  GI +AY TGRGSI +R
Sbjct: 197 RELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGTQGIHDAYTTGRGSIRMR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+ S  R  +V+TE+PYQVN    +  IAE VR+ +I  I+++ D+ SDR G R+
Sbjct: 257 GVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAGISNIEDQSSDRVGLRI 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  + +V++
Sbjct: 317 VVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVNHQLDVII 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR               L
Sbjct: 377 RRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR-------------TGL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DI
Sbjct: 424 IELLD-------------VDEIQAQAILDMQLRRLAALERQKIIDDLAKIEAEIADLEDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+K EL  + ++    RRTRI+    D+ DED I RED+VVT++  GY KR
Sbjct: 471 LAKPERQRAIVKDELAEITEKYGDDRRTRIISADGDVADEDLIAREDVVVTITETGYAKR 530

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
               +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  +
Sbjct: 531 TKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTTKGRVYRAKAYDLPEAA 590

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    ERI  ++     +S  +  Y+V ATK+G V+++KL++F     
Sbjct: 591 RTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATKNGLVKKSKLTEFDSNRS 647

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A+R   GR + GV+G+ 
Sbjct: 648 GGLVAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEALRPM-GRATSGVQGMR 706

Query: 729 LAKGDQVISMAIV 741
               D ++S+ +V
Sbjct: 707 FNGEDDLLSLNVV 719



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++  +  EIT    D       S +G++++E   +L  +E  ++T++E G+ KRT +
Sbjct: 477 QRAIVKDELAEITEKYGDDRRTRIISADGDVADE---DLIAREDVVVTITETGYAKRTKT 533

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  + KG + R    ++  A+
Sbjct: 534 DLYRSQKRGGKGVQGAGLKQDDIVKHF---FVCSTHDWILFFTTKGRVYRAKAYDLPEAA 590

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901
           R  +G     + +   +ER+  V +I+  E
Sbjct: 591 RTARGQHVANLLAFQPEERIAQVIQIKSYE 620



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 22/220 (10%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-- 596
           +V  +  G VK+  L+ + + R GG     V +RD D +    + S    +L  S+ G  
Sbjct: 625 LVLATKNGLVKKSKLTEFDSNRSGGL--VAVNLRDGDELVGAVLCSAEDDLLLVSAHGQS 682

Query: 597 --FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             F   ++  R     P  R  + +  +  N  + + ++    E        Y++ AT  
Sbjct: 683 IRFSATDEALR-----PMGRATSGVQGMRFNGEDDLLSLNVVRE------GTYLLVATSG 731

Query: 655 GNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++    R GK  + ++ D R   ++      +E+++   T  G  +R    
Sbjct: 732 GYSKRTAIEEYPVQGRGGKGVLTVQYDPRRGSLVGALVVDEESELYAITSGGGVIRTIAK 791

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-VLHADADYDE 750
            +R  AGR + GVR ++L +GD ++++A      DAD DE
Sbjct: 792 QVRK-AGRQTKGVRLMNLGEGDTLLAIAHNADEGDADPDE 830


>gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 836

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 335/885 (37%), Positives = 513/885 (57%), Gaps = 88/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++ + K A
Sbjct: 20  VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHDRPFKKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+RYTE RL
Sbjct: 80  RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF  NYDG  +EP VL A +PN+L NG  GIAVGM+T+IP+HNL
Sbjct: 140 SKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++VIR    
Sbjct: 200 SELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVE 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+RDES R+G R+VIE+K
Sbjct: 260 IEQLQ-TRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGIRLVIEVK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQL++ T LQ  F VNM+AL    P    +   L+ ++  + +V+VR+TK+
Sbjct: 319 RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDVLVRKTKF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           +LNK ++R H+L GL IA  N+DEVV II+ S N + A   L  +               
Sbjct: 379 VLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK--------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q +A+L++RL  L+ L  + ++ E   L   I+ C  +L+ + 
Sbjct: 424 -----------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQK 472

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L IIK+EL  + D+    RR+ I+  +  +++DE  I  E++V+T+S  GY+KR+ + 
Sbjct: 473 LQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGYLKRIGVD 532

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P G    +
Sbjct: 533 AYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNK 592

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   +N++ + + ERI +++      +++++ Y  F TK+G V+R  L++FI I  +GK+
Sbjct: 593 GIPAVNLIKIEKDERICSLLSV----NNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKL 648

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+  D  D + SV      ++I + +  G  VRF  + +RV + R + GV GISL KG+ 
Sbjct: 649 AISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGISLNKGEF 707

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V                                         N  S   N S        
Sbjct: 708 V-----------------------------------------NGLSTSSNGS-------- 718

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L+V + G GK TS   +R++ R+ KG++   V+  +  G +V    V  N+ ++
Sbjct: 719 ----LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT--DRTGPVVTTTTVFGNEDLL 772

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++S  G ++R  + E+    + T GV +     +ER+  V   +E
Sbjct: 773 MISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKE 817


>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
 gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
          Length = 820

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 330/870 (37%), Positives = 497/870 (57%), Gaps = 95/870 (10%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA+++ILGRA+PD RDG+KPVHRRIL+ M  +G+  +  Y KCAR+ GEV+GKYHPHG
Sbjct: 1   MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGK 148
           + A+YDAL R+AQ +S  + LI+G GNFGS+D DP AA RYTECRL + AA  LLDD+  
Sbjct: 61  DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID- 207
           DTV+F PN+DGS  EP VL A+ P +L+NGG GIAVGMATN+P HNLGE++D CVA+   
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180

Query: 208 ----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE------ 257
                 ++    L++II  PDFPTGA I+G++G ++ Y TG G +V+R V H+E      
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            K    R  I+VTE+PYQVNKAA+LE+IA LV EK++  IADLRDESDR G R+VIELKR
Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            A A V+ N L + TSLQ+ FS N +AL   G  P+RFTL   L  F+ FR + +  +  
Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+K  +RAH++ GL IA+ + DEV+ I+R +P+  +AR  LM                
Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMST-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                    +  + LS  Q  A+L+L+L +LT L  D + +E  +L        ++L++ 
Sbjct: 407 --------DNPKLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTND 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +   + +E +++K    TPR+T+I+    D  D D +  E  V+ V+  GY+KR+PL 
Sbjct: 459 AAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLK 518

Query: 555 VYRAQRRGGKGRSGV--VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            + +Q RG +G+ G    + D++ V   F  + H +VL  +  G  Y  + +++P G   
Sbjct: 519 TFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG  + ++L +   + IT+++P  E      N ++V AT++G +++  L+ F ++ + G
Sbjct: 579 ARGAPIPSVLPVKSDDVITSVLPVSE---FSKNEFIVLATEYGWIKKTPLAAFEKLTQRG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I   L   D +   E CT  +DIL+ +  GQ  RF  + +R  A R S GV+ ++L KG
Sbjct: 636 LIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTA-RTSRGVKSMTLKKG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D +  M ++   D                                               
Sbjct: 695 DTIADMNVLRKED----------------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                +F+L V+ +G+GKR  + +FR + R G G+ A           +  +  VN++D+
Sbjct: 708 -----KFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDE 762

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           I+L++ +G ++R  V++I    RA  GV++
Sbjct: 763 ILLITSQGVIVRQKVSDISCQGRAATGVLV 792



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 18/222 (8%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           + + +V  +  G++K+ PL+ +  ++   +G     + D D +      + +  +L  S+
Sbjct: 607 KNEFIVLATEYGWIKKTPLAAF--EKLTQRGLIIATLADGDRLNWCEKCTDNDDILVGST 664

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + K   L    P AR    +  ++L +G+ I  +    +++      +V+  T  
Sbjct: 665 RGQATRFKAADL---RPTARTSRGVKSMTLKKGDTIADMNVLRKEDK-----FVLVVTTE 716

Query: 655 GNVRRNKLSDFIQINR--SGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFP 709
           G  +R    +F    R  SG IA+K  +    D I ++    ++++ILL T  G  VR  
Sbjct: 717 GYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDEILLITSQGVIVRQK 776

Query: 710 ISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYD 749
           +S I    GR + GV  + + +  GD + +++IV   DAD D
Sbjct: 777 VSDISC-QGRAATGVLVQKVDVRSGDSISTVSIVPKEDADGD 817


>gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
 gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
          Length = 819

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 341/888 (38%), Positives = 503/888 (56%), Gaps = 90/888 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V + +EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M + G    K + 
Sbjct: 3   EQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKAFS 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+VMG++HPHG+AAIYDAL R+ Q W++R  L +GQGNFGS   D  AA RYTE
Sbjct: 63  KCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF PNYDG   EP V+  R+PN+LVNG  GIAVGMATNIP 
Sbjct: 123 TKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G +  ++NPD       +AL+E I+GPDFPTGA +L   GIK+AY TGRGS+
Sbjct: 183 HNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGSV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
           V+RGV  IE+  G R  +VV E+PYQVN   +  KIA LV+E ++  IAD+RDE S R G
Sbjct: 243 VMRGVVDIEEIDG-RTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRTG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R++I LKR A A V+LN LY++T LQ  F VNM+A+    P   +L   ++ +V  + E
Sbjct: 302 QRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCSFIRLWVEHQIE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT + L +A  RAH+L     A+  +DEV+++IR S + E A+  LM         
Sbjct: 362 VIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + E Q RAIL+L+L RL  L R  I +E   +   I   
Sbjct: 413 -----------------ALLKIDETQARAILDLQLRRLAALERQRIISEAREIEELISSF 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLG 546
             ILS ++    +I +EL  +  +    RRT I+ G    +  ED I  E +VV ++  G
Sbjct: 456 RKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIEDLIPVEPVVVVMTRCG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YR+Q RGG+G  G  ++ +D V      +TH  ++FF++ G VY+ K + +
Sbjct: 516 YIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEV 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +ARG+ + N+L L   E +T I+     +S   +L  V ATK G V++  L ++ 
Sbjct: 576 PEASREARGQHVANLLPLKPNEAVTRILSVSNFDSEDTSL--VLATKDGYVKKTTLKEYD 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +G IA+KL   D+++S      + DI+L TK  + +RF    +R  + R S GV+G
Sbjct: 634 TSLSTGVIAIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLS-RGSYGVKG 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL + D ++S  ++L  D+                                        
Sbjct: 693 ISLRENDLLLSAELILSDDS---------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       +I  VSE+G+ KR+   D+++  R G G+R  ++++  + G L  +  
Sbjct: 713 ------------YIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITE--QKGVLADMLV 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           VND+D+++++   G +IR  V E+    R T GVV    +  ++++++
Sbjct: 759 VNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDGDKILAM 806


>gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
 gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 315/723 (43%), Positives = 456/723 (63%), Gaps = 32/723 (4%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G +    Y K A   G 
Sbjct: 20  VKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPQHPYRKSADTVGA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ K A 
Sbjct: 80  VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSKIAC 139

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D+ PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP HNL EVV 
Sbjct: 140 EMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQGIAVGMATNIPPHNLREVVA 199

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G  A++DNPDIDL  LME ++GPDFPTG +I+GR+GI+ AYATGRG I +RG + I +  
Sbjct: 200 GMCALMDNPDIDLAGLMEFVKGPDFPTGGIIMGRSGIRAAYATGRGKITLRGRAEIVEKK 259

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGAS 319
             R +I++TEIPY VNK  ++E IA+LV++KRI  I+DL DE S R G ++VIE+K+ A+
Sbjct: 260 NGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLNDESSSRTGMKIVIEIKKDAN 319

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LNQLYRYT LQ    V M+AL+   P+  +L  +++ ++ F+ EV+ RRT + L K
Sbjct: 320 PQVVLNQLYRYTQLQDTVGVIMLALDDGVPKIMSLKTVMERYIDFQMEVIRRRTAFDLKK 379

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A++R H+L GL  AV  +DE++  IR         R+ +  ++                 
Sbjct: 380 AQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAVMDNFG---------------- 423

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                      E+Q  AI++L+L RL GL    I  EL  L   I +  DILS+   +  
Sbjct: 424 ---------FDELQADAIVKLQLGRLAGLEILKIEQELGELREAIADYKDILSNDEHVKR 474

Query: 500 IIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           I+K +L ++ D+    RRT I  V G +D+  ED I  E  + T++H GY+KR  L  Y+
Sbjct: 475 IVKTDLQTLADKYGDERRTSIEAVSGEVDI--EDLIPEETCIFTLTHEGYIKRTTLDTYQ 532

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ RGG+G  G+  +D+DF  +LF+ STH  +LF +  G VY+ K +++P GS  A+G  
Sbjct: 533 AQNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVYRLKGYQVPEGSRTAKGSH 592

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L L +GE++ T+M     ++  +N Y+   T+ G ++R  LS F  I ++G IA+ 
Sbjct: 593 IVNLLQLQEGEKV-TLMLQQSAKADEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIG 651

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  D ++        ++I++ T  G  + F  S  R   GR   GVR I L +GD VI 
Sbjct: 652 LNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAM-GRTGHGVRVIRLREGDYVIG 710

Query: 738 MAI 740
             +
Sbjct: 711 AGV 713



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFI 800
           A ADY + +   +H+   +R++  D + +     D   +S+E    E   ++L  +E  I
Sbjct: 458 AIADYKDILSNDEHV---KRIVKTDLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETCI 514

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
            T++ +G+ KRT+   ++  NR G+G++     K ++      +F  + +D ++ ++D+G
Sbjct: 515 FTLTHEGYIKRTTLDTYQAQNRGGRGVQGM-TQKDDDFTE--ELFVGSTHDYMLFMTDQG 571

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            + R+   ++   SR         TAK   +V++ +++E E V
Sbjct: 572 RVYRLKGYQVPEGSR---------TAKGSHIVNLLQLQEGEKV 605


>gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
 gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
          Length = 839

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 318/736 (43%), Positives = 461/736 (62%), Gaps = 37/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M   G   ++ YVKC+
Sbjct: 27  IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYDAL RMAQ W+LR  L++G GNFGS   DP AA RYTEC+L
Sbjct: 87  RVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  A  +L D+ +DTVD + NYDG  +EP +L +R PN+LVNG  GIAVGMAT IP HNL
Sbjct: 147 EPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKIPPHNL 206

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+       +++P+ D    L+AL+ I++GPDFPT  +I+GR GI++AY TGRGSI +R
Sbjct: 207 REIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIVGRAGIQDAYRTGRGSIRMR 266

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  R G R+
Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTGMRL 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +VA + EV+ 
Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVAHQIEVIR 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA +RAH+L GLA A+  LDEV+ +IR SP  + AR+ L++           
Sbjct: 387 RRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIR----------- 435

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AIL+++L RL  L R  I ++L  L +EI +  DI
Sbjct: 436 ---------------LLEIDEIQATAILDMQLRRLAALERQRILDDLAKLELEIADFKDI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+ +EL  +  +    RRT+I+    ++  ED I RED+VVT++  GY KR
Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSMEDLIAREDIVVTITRTGYAKR 540

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 541 TKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E+I  I+   + + +    Y+V ATK+G V++ +L +F     
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQVAP---YLVLATKNGVVKKTRLEEFDSNRS 657

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++       E D+LL +K    +RF  +  A+R   GR + GV G+ 
Sbjct: 658 GGIIAINLREDDELVGAALVAPEQDLLLVSKNALAIRFNATDEALRPM-GRATSGVIGMR 716

Query: 729 LAKGDQVISMAIVLHA 744
            ++ D++++M +V H 
Sbjct: 717 FSEDDELLAMEVVRHG 732



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QRR++S +  EI +   D         +G +S E   +L  +E  ++T++  G+ KRT  
Sbjct: 487 QRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSME---DLIAREDIVVTITRTGYAKRTKV 543

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG+    + + + +      F  + +D I+  ++KG + R    E+  AS
Sbjct: 544 DAYRSQRRGGKGVSGASLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEI 902
           R  KG     + +   DE++  +  I + ++
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQV 631



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 90/208 (43%), Gaps = 20/208 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
           +V  +  G VK+  L  + + R GG     + +R++D +    +V+    +L  S    +
Sbjct: 635 LVLATKNGVVKKTRLEEFDSNRSGGI--IAINLREDDELVGAALVAPEQDLLLVSKNALA 692

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           + F   ++  R     P  R  + +  +  ++ + +  +      E   + L V+ AT  
Sbjct: 693 IRFNATDEALR-----PMGRATSGVIGMRFSEDDELLAM------EVVRHGLDVLVATNG 741

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++    R GK    A   + R  ++       ++++   T  G  +R P+ 
Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVK 801

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +R    RN++GV+ + L  G  ++++A
Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 22/226 (9%)

Query: 685 LSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +S+E      DI++T T+ G   R  + A R    R   GV G SL + D ++S   V  
Sbjct: 517 VSMEDLIAREDIVVTITRTGYAKRTKVDAYRS-QRRGGKGVSGASL-RQDDIVSHFFVCS 574

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS----EERCQELKLKE-- 797
                 + I +  +     R  + +  E + +     V   ++    E+  Q +++ +  
Sbjct: 575 TH----DWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQ 630

Query: 798 --QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +++  ++ G  K+T   +F  SNRSG GI A ++ + +E+     V P  D   ++L
Sbjct: 631 VAPYLVLATKNGVVKKTRLEEFD-SNRSG-GIIAINLREDDELVGAALVAPEQD---LLL 685

Query: 856 VSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           VS     IR    +  +R   RAT GV+    ++D+ ++++E +R 
Sbjct: 686 VSKNALAIRFNATDEALRPMGRATSGVIGMRFSEDDELLAMEVVRH 731


>gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
 gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
          Length = 834

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 347/843 (41%), Positives = 495/843 (58%), Gaps = 56/843 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVKCA
Sbjct: 14  IEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYVKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+G YHPHG+AA+YD L R+AQ W +R  L++GQGNFGS   DP AA RYTECRL
Sbjct: 74  RVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSPGNDPAAAMRYTECRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+GK+TVDF PNYDG   EPV+L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 134 TPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSAGIAVGMATNIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++PD      L AL+E I+GPDFPTG VI+G  GI+ AY TGRGSIV+R
Sbjct: 194 REVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIVGHAGIEEAYRTGRGSIVMR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+ +  R+ +VVT++PYQVN   +  +IAELV E RI  IAD+RD+ S R G R+
Sbjct: 254 AVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGIADIRDDSSSRTGQRL 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A   V+L  LY++T LQ  F  NMVAL    P   +L   ++ +VA + +V+V
Sbjct: 314 VISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVDNVPRTLSLDAFIRHWVAHQIDVIV 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A  RAH+L GL  A+  LD V+ +IR S + + AR  LM+          L
Sbjct: 374 RRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARSGLME----------L 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + EVQ  AIL+++L +L  L R  I ++L     EI +  DI
Sbjct: 424 LD----------------VDEVQATAILDMQLRKLAALERQAIIDDLAKHEAEIADLNDI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++ SR   I+ +EL  + D+    RRT IV    D+  ED I  ED+VVT++  GY KR
Sbjct: 468 LANESRQRAIVSEELKEIVDKYGDERRTAIVPADGDVSIEDLIAEEDVVVTITRGGYAKR 527

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              S+YR+QRRGGKG  G  +R +D V   F+ +TH  +LFF+  G VY+ K + +P  +
Sbjct: 528 TKTSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAA 587

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  ++   + +++    Y+V AT+ G V++  L +F     
Sbjct: 588 RSARGQHVANLLAFQPDEKIAQVLALRDYDAAP---YLVLATRSGLVKKTALREFDSNRT 644

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728
            G IA+ L   D ++     + ++++LL ++  Q +RF     A+R   GR + GV G+ 
Sbjct: 645 GGIIAINLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEALRPM-GRATSGVIGMR 703

Query: 729 LAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
               D +++M +V       +     Y +R    ++    R      T +IT+ + D   
Sbjct: 704 FHDDDALLAMMVVRPQAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKITAERGDLVG 763

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              + E         E  +L ++  G   RT   + R ++R+  G+R  D++   E  AL
Sbjct: 764 ALMVDE---------EDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDLA---ENDAL 811

Query: 842 VAV 844
           VA+
Sbjct: 812 VAI 814


>gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 322/738 (43%), Positives = 463/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 21  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 81  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 141 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 200

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NP+      LDAL++ I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 201 REVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 261 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 319

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +VA + EV+V
Sbjct: 320 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 379

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM          DL
Sbjct: 380 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----------DL 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++                + E+Q  AILE++L RL  L R  I  E + L  +I E  +I
Sbjct: 430 LE----------------IDEIQANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEI 473

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+ QEL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+KR
Sbjct: 474 LASPVRQRGIVSQELAAIVEKFGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 533

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 534 TKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAG 593

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++  L D+     
Sbjct: 594 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTSLKDYDSPRS 650

Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L  +     DE++  E  + ++D+LL ++  Q +RF  +   +R   GR + G
Sbjct: 651 GGVIAINLREQEDGTDDELIGAELVSSDDDLLLISRKAQSIRFTATDDTLRPM-GRATSG 709

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 710 VKGMSFREGDELLSMNVV 727


>gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae]
          Length = 867

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 318/888 (35%), Positives = 528/888 (59%), Gaps = 90/888 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + E+  I    I +EM+NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  N 
Sbjct: 59  DSEKNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNS 118

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 119 AYKKSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 178

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++ + K+TVDF PNYDGS QEP VL  R+PN+LV+G  GIAVGMAT 
Sbjct: 179 YTEARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATK 238

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  N DI ++ L + + GPDFPTGA I G +GI+ AY TGRGS +
Sbjct: 239 IPPHNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIFGVSGIQQAYKTGRGSFI 298

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  +  + +I+  EIPY+V K A++EK+ +LV+EKR+  I D+RDE++RQG R
Sbjct: 299 LRAKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIR 358

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G + ++ILNQLY+ T  Q  +S+NM+A+   +P+   L  IL  ++  ++E+ 
Sbjct: 359 VVFEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVKGEPKLLNLKEILYQYLLHQKEIN 418

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L K +++ +VL+G+ +AV N+DEVV+II+ S +   A+ +L +R         
Sbjct: 419 LRGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKR--------- 469

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+ +QT+AI+++RL RLT L  + +  E+  +  EI    +
Sbjct: 470 -----------------FDLNPIQTKAIVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEE 512

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I++S  +L+ ++  + L + +    PRR+ I   + ++ DED I R D++++++   YVK
Sbjct: 513 IIASDEKLVQLVIDQHLEIINNFADPRRSEINGEIGNIIDEDLIPRSDVIISLTDNNYVK 572

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR Q RGG G S   +  +D++  ++  +THT +L  +S   ++K +  ++P  
Sbjct: 573 RINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDS 632

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           + Q +G   +N+L + + E+I T++ + +D   + + ++V  ++ G +++  L  +  IN
Sbjct: 633 TKQGKGIPFVNLLPIEKDEQIYTLLVWNQD---YAHHFLVTVSRLGLIKKTPLEFYKNIN 689

Query: 670 RSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++GK A+KL+  D ++S     +EN   ++L+ +  G+  +F   +IR   GR ++GV+G
Sbjct: 690 KNGKYALKLNENDTLVSA-FIVKENEPCEVLIGSSSGKVNKFDFDSIRS-TGRVAMGVKG 747

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   + VI  +   H+                    +SG                   
Sbjct: 748 IKLTNDEFVIGAS---HS--------------------LSG------------------- 765

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      +++  +   G+GK+TS  ++R ++R+ KG++  +  K    G+L  +  
Sbjct: 766 -----------EYVFALGRFGYGKKTSIDEYRQTSRNSKGVKTLNTEK---AGSLCFISI 811

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  N++ ++V+ KG LIR  + +I I SR TKGV I +   ++ + SV
Sbjct: 812 IKGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDNDEIQSV 859


>gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
 gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
          Length = 871

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 320/738 (43%), Positives = 463/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 23  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 83  RVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++P+      LDAL+E I+GPDFPTGA+++GR GI++AY TGRGSI +R
Sbjct: 203 REVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGALVVGRNGIEDAYRTGRGSITMR 262

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 263 AVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 321

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+V
Sbjct: 322 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 381

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 382 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM------------ 429

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L R  I  E + L  +I +   I
Sbjct: 430 --------------GLLEIDEIQANAILEMQLRRLAALERQKITAEHDELQAKIDQYNAI 475

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S      I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 476 LASPELQRKIVSEELAAIVDKFGDDRRSKLVPFEGDMSVEDLIAEEDIVVTISRGGYVKR 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 536 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 595

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + +++    Y+V ATK G V++  L D+     
Sbjct: 596 RDARGQHVANLLAFQPDEQIAQILAIRDYDAA---PYLVLATKGGLVKKTSLKDYDSPRS 652

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      + DE++  E  + E+D+LL ++  Q +RF  +  A+R   GR + G
Sbjct: 653 GGVIAINLRETESGADDELIGAELVSAEDDLLLISRKAQSIRFTATDDALRPM-GRATSG 711

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 712 VKGMSFREGDELLSMNVV 729


>gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 648

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 303/643 (47%), Positives = 426/643 (66%), Gaps = 34/643 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + KCA
Sbjct: 9   VHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            EV+   V +ID     N +  ++ +++I++GPDFPTGA+ILG  GI+ AY TGRG I +
Sbjct: 189 REVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRTGRGKIRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S+R+G R+
Sbjct: 249 RAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R  +A+V+LNQLY++T LQ  F V M+AL   +P+   ++ +L  ++  +EEVV 
Sbjct: 309 CIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLRHQEEVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+  L++           
Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++VQ +AI+++RL  LTGL R+ + NE   L   I E   I
Sbjct: 418 ---------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ R  LLG+IK+E+L +  +    RRT I    LD+  ED I  +D+V+T++ LGY+KR
Sbjct: 463 LADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMTKLGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +++Q RGGKG  G+   +ED+V +LF+ STH  ++FF++ G VY+ K + +P   
Sbjct: 523 MTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             ARG A+IN+L L   E+IT ++P  E E      Y+  ATK
Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIREYEDGK---YLFMATK 622



 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 83/162 (51%), Gaps = 13/162 (8%)

Query: 750 ERICYMKHMSAQRRLISGDTEE----ITSLKND---SSVEGNISEERCQELKLKEQFILT 802
           ERI  ++ + A R+L+ G  +E    I+    D   +S+  +  +   ++L  ++  ++T
Sbjct: 454 ERIGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVIT 513

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +++ G+ KR ++  F+  NR GKGI+     + + +  L   F  + ++ I+  ++ G +
Sbjct: 514 MTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEEL---FMTSTHNYIMFFTNTGRV 570

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESE 901
            R+   EI  A R  +G  I +  +   DE++ ++  IRE E
Sbjct: 571 YRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE 612


>gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205]
 gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205]
          Length = 839

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 322/736 (43%), Positives = 461/736 (62%), Gaps = 37/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M   G   ++ YVKC+
Sbjct: 27  IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYDAL RMAQ W+LR  L++G GNFGS   DP AA RYTEC+L
Sbjct: 87  RVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ +DTVD + NYDG  +EP +L +R PN+LVNG  GIAVGMAT IP HNL
Sbjct: 147 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKIPPHNL 206

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+       +++P+ D    L+AL+ I++GPDFPT  +I+G+ GI++AY TGRGSI +R
Sbjct: 207 REIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIVGQAGIQDAYRTGRGSIRMR 266

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            V  +E+    R  +VV+E+PYQVN   + E+IAEL+RE ++  IAD+RDES  R G R+
Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIREGKLGGIADIRDESSGRTGMRL 326

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++++V  + EV+ 
Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRSYVEHQIEVIR 386

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA +RAH+L GLA A+  LDEV+ +IR SP  + AR             + L
Sbjct: 387 RRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDAR-------------QGL 433

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I L+D             + E+Q  AIL+++L RL  L R  I ++L  L +EI +  DI
Sbjct: 434 IRLLD-------------IDEIQATAILDMQLRRLAALERQRILDDLVKLELEIADFKDI 480

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+ +EL  +  +    RRT+I+    ++  ED I RED+VVT++  GY KR
Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSMEDLIAREDVVVTITRTGYAKR 540

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + LP  S
Sbjct: 541 TKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E+I  I+   + + +    Y+V ATK+G V++ KL +F     
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQVAP---YLVLATKNGVVKKTKLEEFDSNRS 657

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728
            G IA+ L   DE++       E D+LL +K    +RF  S  A+R   GR + GV G+ 
Sbjct: 658 GGIIAINLREDDELVGAALVAPEQDLLLVSKNALAIRFNASDEALRPM-GRATSGVIGMR 716

Query: 729 LAKGDQVISMAIVLHA 744
            ++ D++++M +V H 
Sbjct: 717 FSEDDELLAMEVVRHG 732



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QRR++S +  EI +   D         +G +S E   +L  +E  ++T++  G+ KRT  
Sbjct: 487 QRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 543

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG+    + + + +      F  + +D I+  ++KG + R    E+  AS
Sbjct: 544 DAYRSQRRGGKGVSGASLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEI 902
           R  KG     + +   DE++  +  I + ++
Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQV 631



 Score = 41.6 bits (96), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 90/208 (43%), Gaps = 20/208 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
           +V  +  G VK+  L  + + R GG     + +R++D +    +V+    +L  S    +
Sbjct: 635 LVLATKNGVVKKTKLEEFDSNRSGGI--IAINLREDDELVGAALVAPEQDLLLVSKNALA 692

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           + F   ++  R     P  R  + +  +  ++ + +  +      E   + L V+ AT  
Sbjct: 693 IRFNASDEALR-----PMGRATSGVIGMRFSEDDELLAM------EVVRHGLDVLVATNG 741

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++    R GK    A   + R  ++       ++++   T  G  +R P+ 
Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVK 801

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +R    RN++GV+ + L  G  ++++A
Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 22/226 (9%)

Query: 685 LSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +S+E      D+++T T+ G   R  + A R    R   GV G SL + D ++S   V  
Sbjct: 517 VSMEDLIAREDVVVTITRTGYAKRTKVDAYRS-QRRGGKGVSGASL-RQDDIVSHFFVCS 574

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS----EERCQELKLKE-- 797
                 + I +  +     R  + +  E + +     V   ++    E+  Q +++ +  
Sbjct: 575 TH----DWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQ 630

Query: 798 --QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +++  ++ G  K+T   +F  SNRSG GI A ++ + +E+     V P  D   ++L
Sbjct: 631 VAPYLVLATKNGVVKKTKLEEFD-SNRSG-GIIAINLREDDELVGAALVAPEQD---LLL 685

Query: 856 VSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           VS     IR   ++  +R   RAT GV+    ++D+ ++++E +R 
Sbjct: 686 VSKNALAIRFNASDEALRPMGRATSGVIGMRFSEDDELLAMEVVRH 731


>gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074]
 gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074]
 gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074]
          Length = 875

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 323/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 25  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 85  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  +EP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 145 APLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARFPNLLINGSAGIAVGMATNIPPHNL 204

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NP+ D    LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 205 REVAAGAQWYLENPEADPDTLLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 264

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ RI  IAD+RDE S R G R+
Sbjct: 265 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQRL 323

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +VA + EV+V
Sbjct: 324 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 383

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM+           
Sbjct: 384 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRASQTVDVARGGLME----------- 432

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + + E+Q  AILE++L RL  L R  I  E + L  +I E   I
Sbjct: 433 ---------------LLEIDEIQANAILEMQLRRLAALERQKIVAEHDDLQAKIDEYNAI 477

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   II +EL ++ D+    RR+ +V    DM  ED I  ED+VVT++  GYVKR
Sbjct: 478 LASPERQRQIISEELAAIVDKFGEDRRSALVPFDGDMSIEDLIAEEDIVVTITRGGYVKR 537

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 538 TKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDVG 597

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + +++    Y+V  TK G V++  L D+     
Sbjct: 598 RDARGQHVANLLAFQPDESIAQILAIRDYDAA---PYLVLGTKGGLVKKTPLKDYDSPRS 654

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      S DE++  E  + ++D+LL +K  Q +RF  +  ++R   GR + G
Sbjct: 655 GGVIAINLRETPDGSDDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPM-GRATSG 713

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 714 VKGMSFREGDELLSMNVV 731



 Score = 44.7 bits (104), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 15/163 (9%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQF 799
           A  DE    +     QR++IS +   I     +         +G++S    ++L  +E  
Sbjct: 469 AKIDEYNAILASPERQRQIISEELAAIVDKFGEDRRSALVPFDGDMS---IEDLIAEEDI 525

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T++  G+ KRT + D+R   R GKG+R T   K+ E   +   F    +  ++  ++K
Sbjct: 526 VVTITRGGYVKRTKTDDYRSQKRGGKGVRGT---KLKEDDIVDHFFVSTTHHWLLFFTNK 582

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           G + R    E+    R  +G     + +   DE +  +  IR+
Sbjct: 583 GRVYRAKAYELPDVGRDARGQHVANLLAFQPDESIAQILAIRD 625


>gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A
 gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37]
 gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 836

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 335/885 (37%), Positives = 512/885 (57%), Gaps = 88/885 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++ + K A
Sbjct: 20  VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHDRPFKKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+RYTE RL
Sbjct: 80  RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF  NYDG  +EP VL A +PN+L NG  GIAVGM+T+IP+HNL
Sbjct: 140 SKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++VIR    
Sbjct: 200 SELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVE 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+RDES R+G R+VIE+K
Sbjct: 260 IEQLQ-TRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGIRLVIEVK 318

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQL++ T LQ  F VNM+AL    P    +   L+ ++  + +V+VR+TK+
Sbjct: 319 RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDVLVRKTKF 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           +LNK ++R H+L GL IA  N+DEVV II+ S N + A   L  +               
Sbjct: 379 VLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK--------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q +A+L++RL  L+ L  + ++ E   L   I+ C  +L+ + 
Sbjct: 424 -----------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQK 472

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L IIK+EL  + D+    RR+ I+  +  +++DE  I  E++V+T+S  GY+KR+ + 
Sbjct: 473 LQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGYLKRIGVD 532

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P G    +
Sbjct: 533 AYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNK 592

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   +N++ + + ERI +++      +++++ Y  F TK+G V+R  L++FI I  +GK 
Sbjct: 593 GIPAVNLIKIEKDERICSLLSV----NNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKR 648

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+  D  D + SV      ++I + +  G  VRF  + +RV + R + GV GISL KG+ 
Sbjct: 649 AISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGISLNKGEF 707

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V                                         N  S   N S        
Sbjct: 708 V-----------------------------------------NGLSTSSNGS-------- 718

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L+V + G GK TS   +R++ R+ KG++   V+  +  G +V    V  N+ ++
Sbjct: 719 ----LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT--DRTGPVVTTTTVFGNEDLL 772

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++S  G ++R  + E+    + T GV +     +ER+  V   +E
Sbjct: 773 MISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKE 817


>gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 812

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 350/886 (39%), Positives = 512/886 (57%), Gaps = 91/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I +E++ SYL YA++VI+GRA+PD +DGLKPV RRIL+ MM++G+  N+ Y K A
Sbjct: 10  VLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRSNQPYRKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE MGKYHPHG+AAIYDA+ RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 70  RIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ +DTVD+ PN+D + QEP+VL +  PN+LVNG  GIAVGMATNIP HNL
Sbjct: 130 SPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMATNIPPHNL 189

Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EVVD    +ID   D++L  ++E++ GPDFPTG  I GR GI NAY TGRG IV+RG  
Sbjct: 190 SEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTITGREGIINAYRTGRGKIVLRGRV 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    +  ++VTEIPY VNK  ++E IA  V+E  +  IADLRDESDR G RVVIEL
Sbjct: 250 SIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRDGIRVVIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R A   ++L QLY  T LQ+ F V  +AL    P    LI +LK F+  R +VV RRT 
Sbjct: 310 QRDADPHLVLKQLYSRTPLQTTFGVINLALVDGVPRELGLIELLKIFLDHRRDVVRRRTN 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH++ GL  A+  +DE++ +I+ S + + AR                + L+
Sbjct: 370 YRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEAR----------------VGLM 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D+  +T          E+Q +AIL++RL RLT L R  +  EL  L  +I+    IL + 
Sbjct: 414 DNFGFT----------ELQAQAILDMRLQRLTNLERSKLEEELRHLLKDIEMYHSILENP 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S L  ++K+EL  +K +    R+T IV+ L+++ D++ I  ED+VV +S  GY++R  L 
Sbjct: 464 SVLDSVVKEELTELKRQYGDARKTEIVDELVEVADDELIPEEDIVVVLSKDGYLRRASLG 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-A 613
            Y  Q RGGKG  G+  +D D V      +TH  +  F+S G V+  K + LP   P+  
Sbjct: 524 DYHLQGRGGKGIKGLKQKD-DEVEMFAATTTHHDIFLFTSKGRVFAIKGYLLP--EPKNG 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GK + +  +L + ER+  I    ++++     +V FAT+ G  +R  +S+   + R+G+
Sbjct: 581 KGKHVSSFFTLEENERVVAI----KEDTMHGARFVFFATERGIAKRLDVSELANLTRAGR 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + LD  D I  V   + E+++L  +  GQ +R      R   GR + GVR I L++ D
Sbjct: 637 RVITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPM-GRQARGVRAIRLSESD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++                                                     C+ L
Sbjct: 696 VLVG----------------------------------------------------CEPL 703

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + +   IL +SEKG GKRTS  +F + +R G G+RA  +S  +  G+LV  + V ++D++
Sbjct: 704 Q-EGMAILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLS--SRTGSLVGAWSVTEDDEV 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V+ KG + R+ V  + + SR   G ++    + + V  +  +R+
Sbjct: 761 MIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRD 806


>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
 gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
          Length = 872

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 342/898 (38%), Positives = 509/898 (56%), Gaps = 116/898 (12%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCAR+ GEV+GK+HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD----- 144
           ++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTECRL     F LD     
Sbjct: 61  DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCFFFLDIDAIF 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            +G+  VDF PN+D S +EP +L AR P++L+NG  GIAVGMATNIP HNLGE+VD    
Sbjct: 121 IIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSV 178

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK--TSGD 262
           +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V+RG + IE       
Sbjct: 179 MIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVMRGKTDIETIDVKSK 238

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G RVVIELKRGA   +
Sbjct: 239 RSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAI 298

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V+ RR ++ L++A +
Sbjct: 299 VLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSVIERRARFKLSQALE 358

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H++ G+ I + NLD V++IIR + N   AR  L++                       
Sbjct: 359 RKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE---------------------- 396

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS------- 495
                 LS+ Q  A+L++ L +LT L R    +E  SL  EI +  ++LS++        
Sbjct: 397 ----FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLV 452

Query: 496 ---------------------RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCI 533
                                 L  +I QE   +K++  TPRR+ I +    +++D D I
Sbjct: 453 DGLDYLRAEINVVIRELKLMWSLFKLILQEATDLKNKFATPRRSFIEDSASTEVDDLDII 512

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E+M++ +S  GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS
Sbjct: 513 PNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFS 572

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVF 650
             G VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P   F ED+      Y+V 
Sbjct: 573 DKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVM 626

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T +G +++  L+ F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    
Sbjct: 627 LTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTC 686

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV  + L +GD++ SM I+                             
Sbjct: 687 NKLRAL-GRKTRGVLAMKLKEGDKMASMDII----------------------------- 716

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                    +   N+ E   +   L   ++L +++ G GKR     FR  N +  G++  
Sbjct: 717 --------PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGY 768

Query: 831 DVSKINEIGALVAV-FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +     + A+  V F + D    ++Q++LVS  GT+ R+ V +I I SR+ +GV++ 
Sbjct: 769 KLPPDCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 826


>gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
 gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
          Length = 943

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 351/903 (38%), Positives = 507/903 (56%), Gaps = 105/903 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE E   IT + +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M   G   +
Sbjct: 63  DESEVDRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPD 122

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + KCA++ GEVMG YHPHG++AIYDA+ R+ Q WS+R  LI GQGNFGS   D  AA 
Sbjct: 123 RSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAP 182

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTEC++   A  L+ D+ +DTVD + NYD +  EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 183 RYTECKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMAT 242

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV D    ++ N     P++ L+A ++ I+GPDFP+GA I+G +GI++AY T
Sbjct: 243 NIPPHNLREVADAVQWLLKNHEATKPEL-LEACLQRIKGPDFPSGATIVGTSGIEDAYRT 301

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI  R V   E+ +G R  +VVTE+PYQVN   +  KIAE+V+  +I  IAD+ DE 
Sbjct: 302 GRGSITQRAVVSTEEING-RMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDET 360

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R G R+VI LKR A A V+LN LY++T LQ  FS NM+AL    P   ++   ++ + 
Sbjct: 361 SGRTGQRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREWT 420

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ L KA ++ H+  G   A+  LDEV+ +IR SP+ + AR  LM    
Sbjct: 421 KHQIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM---- 476

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                 DL++                + E+Q  AIL ++L RL  L R  I  E + L  
Sbjct: 477 ------DLLE----------------IDEIQANAILAMQLRRLAALERQKIIEEHDRLQA 514

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+E   IL+   R   I+ +EL  + D     RRT I+    DME ED I  EDMVVT+
Sbjct: 515 LIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMVVTI 574

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR     YRAQ+RGGKG  G  +R++D V   F  +TH  +LFF++ G VY+ K
Sbjct: 575 TRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAK 634

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + LP     A+G+ + N+++    E I +++     +S  +  ++V AT+ G V++  +
Sbjct: 635 GYELPEAPRDAKGQHVANLMAFQPDENIASVLAI---DSYEDAQHLVLATESGLVKKTPM 691

Query: 663 SDFIQINRSGKIAMKL--------DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SA 712
             F      G IA+ L           D ++S      +++ILL ++ GQ VRFP     
Sbjct: 692 PAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDGT 751

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV G+     D +++M ++                               
Sbjct: 752 LRP-TGRATSGVTGMKFRHQDTLLAMDVI------------------------------- 779

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              + DS                   F++TV++ GF KRT+  ++R+  R G GIR   V
Sbjct: 780 ---RPDS-------------------FVITVTDGGFAKRTTVDEYRLQGRGGLGIR---V 814

Query: 833 SKI-NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +K+ ++ G LV    V + D++++V ++G ++R  V E+    R T GVV     K +R+
Sbjct: 815 AKLPDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRI 874

Query: 892 VSV 894
           + V
Sbjct: 875 LLV 877


>gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
 gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
          Length = 586

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 297/597 (49%), Positives = 416/597 (69%), Gaps = 27/597 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +   PRRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDPRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIP 572


>gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
 gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A
 gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
          Length = 857

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 324/738 (43%), Positives = 461/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 13  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 73  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 133 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++N +      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 193 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 253 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQS F  NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 312 VIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIV 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM          DL
Sbjct: 372 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----------DL 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++                + E+Q  AILE++L RL  L R  I  E + L  +I E  +I
Sbjct: 422 LE----------------IDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+KR
Sbjct: 466 LASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 526 TKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++  L D+     
Sbjct: 586 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRS 642

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      S DE++  E  + E+D+LL +K  Q +RF  S   +R   GR + G
Sbjct: 643 GGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPM-GRATSG 701

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 702 VKGMSFREGDELLSMNVV 719


>gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
          Length = 867

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 353/909 (38%), Positives = 519/909 (57%), Gaps = 99/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K +
Sbjct: 18  IRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSKSS 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC++
Sbjct: 78  RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL
Sbjct: 138 APLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+  G    +++PD      L+AL+++I GPDFPTGA ILG  GI++AY TGRGSI  R
Sbjct: 198 RELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGHKGIEDAYRTGRGSITQR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+  I  IAD+RDE S R G R+
Sbjct: 258 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTGQRL 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   ++ G ++ ++  + +V+V
Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSIDGFIRHWINHQIDVIV 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +R H+L G   A+  LDEV+ +IR SP  + AR               L
Sbjct: 377 RRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEAR-------------AGL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I+L+D             +  +Q  AIL L+L RL  L R  I +E   L   + +  DI
Sbjct: 424 IELLD-------------VDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  + D+    RRTRI+    +M  ED I  ED+VVT++  G+ KR
Sbjct: 471 LAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + +P G 
Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGG 590

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E I  ++     E +    ++V ATK G V++  LS +     
Sbjct: 591 RDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---FLVLATKRGLVKKTPLSLYNSPRS 647

Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
            G IA+ L    D + DE++S +T   + D++L ++ GQ VRF  +  ++ + GR++ GV
Sbjct: 648 GGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGV 707

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+   +GD                                    +E+ S+         
Sbjct: 708 RGMKF-RGD------------------------------------DELLSM--------- 721

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  E+      +L V+E G+ KRT   ++   +R   G+R   +  ++E G LV  
Sbjct: 722 -------EVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKL--VDERGGLVGA 772

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901
             V  ++ ++++++ G L++V  +++R  +R T GV+     + +R++++ R  +S   +
Sbjct: 773 LVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSGDED 832

Query: 902 IVDEAESTE 910
             DE+E+TE
Sbjct: 833 ETDESENTE 841


>gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 867

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 352/909 (38%), Positives = 519/909 (57%), Gaps = 99/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K +
Sbjct: 18  IRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSKSS 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC++
Sbjct: 78  RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL
Sbjct: 138 APLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+  G    +++PD      L+AL+++I GPDFPTGA ILG  GI++AY TGRGSI  R
Sbjct: 198 RELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGHKGIEDAYRTGRGSITQR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R+ +VVTE+PYQVN   + +KIA+LVR+  I  IAD+RDE S R G R+
Sbjct: 258 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTGQRL 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   ++ G ++ ++  + +V+V
Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSIDGFIRHWINHQIDVIV 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +R H+L G   A+  LDEV+ +IR SP  + AR  LM+           
Sbjct: 377 RRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLME----------- 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             +  +Q  AIL L+L RL  L R  I +E   L   + +  DI
Sbjct: 426 --LLD-------------VDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   II  EL  + D+    RRTRI+    +M  ED I  ED+VVT++  G+ KR
Sbjct: 471 LAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + +P G 
Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGG 590

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E I  ++     E +    ++V +TK G V++  LS +     
Sbjct: 591 RDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---FLVLSTKRGLVKKTPLSLYNSPRS 647

Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
            G IA+ L    D + DE++S +T   + D++L ++ GQ VRF  +  ++ + GR++ GV
Sbjct: 648 GGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGV 707

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+   +GD                                    +E+ S+         
Sbjct: 708 RGMKF-RGD------------------------------------DELLSM--------- 721

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  E+      +L V+E G+ KRT   ++   +R   G+R   +  ++E G LV  
Sbjct: 722 -------EVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKL--VDERGDLVGA 772

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901
             V  ++ ++++++ G L++V  +++R  +R T GV+     + +R++++ R  +S   +
Sbjct: 773 LVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSGDED 832

Query: 902 IVDEAESTE 910
             DE+E+TE
Sbjct: 833 ETDESENTE 841


>gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
 gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
          Length = 834

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 344/881 (39%), Positives = 503/881 (57%), Gaps = 88/881 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+PTH
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  I+GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312
             IE+T  DRE IVV E+PY V K  + EKIAELV++ +I  +AD+RDE S+R G R++I
Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L++ F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLFKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR  LM R            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL  + ++    RR+ I+    D E  +ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKKIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  +
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     E +   +   ++  TK G +++ +L       +
Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE+++V      +D ++TT  G  +R     IR   GR + GV+GI+L 
Sbjct: 656 RGILALTLENNDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKM-GRAAAGVKGIALD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                             D+ IC                           V GN      
Sbjct: 715 ------------------DDDIC---------------------------VSGNAIH--- 726

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                K + ++ ++E G GKR SS  F +  R GKG     +   N+ G +V+V  V D 
Sbjct: 727 -----KGESLIVITENGIGKRLSSKQFNVKGRGGKG--QIYIKPDNKTGKVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           D+I++V+     I++  + I    R  KGV I + +   RV
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARV 820


>gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 898

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 329/904 (36%), Positives = 524/904 (57%), Gaps = 89/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ G+    +   M++S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+    
Sbjct: 65  ETEQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTA 124

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGS+DGD  AA R
Sbjct: 125 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMR 184

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++D + K+TVDF  NYDG+ +EP VL +R+PN+LV+G  GIAVGMATN
Sbjct: 185 YTEARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATN 244

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D   A+  NP+I +D LME +  PDFPTGA I  + G+  AY TGRGSI 
Sbjct: 245 IPPHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIFNKAGLIEAYKTGRGSIT 304

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  ++I++ +  + +I++TEIPY+V K  ++EKIA+ ++ KRI  I+D RDES+R G R
Sbjct: 305 MRAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIR 364

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI++K+ A  +VILN LY+ T LQ+ FS NM+AL   +P+   L   L+ ++  + +V 
Sbjct: 365 VVIDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGEPKLLNLKECLQVYLDHQIDVT 424

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L K   RAH+L GL I V N+D V+ II+ S     A+ +L Q          
Sbjct: 425 RRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQ---------- 474

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q +AI+++RL RLTGL  + + +EL+ +   I E   
Sbjct: 475 ----------------TFSLSEIQAKAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRA 518

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           ILSS  +L+ +I +EL  VK+     RR+ I   ++  + +ED I ++++V+T+S   Y+
Sbjct: 519 ILSSHEKLIELIIKELQEVKEAYGDKRRSEIRWDVMSSINNEDLIPQKEIVITLSSNNYI 578

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR QRRGG G S V    +D + D+ + +TH  +L F+    +Y+ +   +P 
Sbjct: 579 KRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPS 638

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+ Q++G  ++NI+ ++ + E++  I+   + E S +   ++  T+ G +++  L ++  
Sbjct: 639 GTKQSKGTPIVNIVPTIQKNEKVVKIICVTDYEESQS---LITVTERGVIKKTNLKEYEL 695

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I ++GK A+ L   D ++ V    Q+ +I +     +  RF ++ +R   GR + GV GI
Sbjct: 696 IRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAASNSRINRFNVADVREM-GRVARGVGGI 754

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+  D+V+S++                                       SS +G    
Sbjct: 755 RLSDDDKVVSVS---------------------------------------SSKDG---- 771

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      +I ++  KG+GK +    +R + R+ KG+   +  K  ++    AV  V
Sbjct: 772 ----------AYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLNEDKAGKLVYAAAVHGV 821

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEIVDEA 906
            D   +I+++  G  IR+ + +I +  R  KGV I +   + +++V V +I + +  D  
Sbjct: 822 ED---LIIMTQSGIAIRISLRDINVIGRNAKGVKIINLKGRSDQIVGVAKIYDEDATDRE 878

Query: 907 ESTE 910
            + E
Sbjct: 879 LTKE 882


>gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
 gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
          Length = 864

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 320/738 (43%), Positives = 461/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL +R+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++P+      L+AL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 200 REVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 260 AVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EVVV
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVVV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM------------ 426

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L R  I  E + L  +I E  +I
Sbjct: 427 --------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+  EL ++ ++    R+T++V    DM  ED I  ED+VVTV+  GYVKR
Sbjct: 473 LASPVRQRGIVSAELAAIVEKYGDDRQTKLVPYDGDMSIEDLIAEEDIVVTVTRGGYVKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 533 TKTDDYRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + +++    Y+V ATK G V++  L D+     
Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRDYDAA---PYLVLATKGGLVKKTPLKDYDSPRS 649

Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L  R     DE++  E  + ++D+LL +K  Q +RF  +  ++R   GR + G
Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSIRFTATDESLRPM-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD ++SM +V
Sbjct: 709 VKGMSFREGDALLSMNVV 726



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++S +   I     D         +G++S    ++L  +E  ++TV+  G+ KRT +
Sbjct: 479 QRGIVSAELAAIVEKYGDDRQTKLVPYDGDMS---IEDLIAEEDIVVTVTRGGYVKRTKT 535

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D+R   R GKG+R    +K+ E   +   F    +  ++  ++KG + R    E+  A 
Sbjct: 536 DDYRAQKRGGKGVRG---AKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592

Query: 875 RATKG---VVIFSTAKDERVVSVERIRE 899
           R  +G     + +   DE +  +  IR+
Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRD 620


>gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 814

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 343/876 (39%), Positives = 506/876 (57%), Gaps = 89/876 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +E++ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  N+ Y K AR+ GE
Sbjct: 15  LVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            MGKYHPHG++AIYD + R+AQ++S+R  L++GQGNFGS+DGD  AA RYTE RLQ+   
Sbjct: 75  TMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEARLQELGE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ +DTV++ PN+D S +EP+VL ++ PN+LVNG  GIAVGMATN+P HNLGEVVD
Sbjct: 135 LMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLGEVVD 194

Query: 201 GCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
               +I+  D  D   LM  + GPDFPTG VILG+ GI +AY TGRG +V++G+ H+E+ 
Sbjct: 195 AICYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRGRLVVQGLVHVEEG 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              +  +V+TEIPY VNK  M+E IA  V+ K I  + D+RDESDR+G RVV+E+ R   
Sbjct: 255 KRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVLEVSRDVD 314

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            D+++ QLYR + LQ+ F V  +AL   +P   +L  +L  F+  R  VV RRT++ L K
Sbjct: 315 PDLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRRTVVRRRTEFRLKK 374

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A  RAH+L GL  A+  +D V+ +IR S N   A+  L+                     
Sbjct: 375 AEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLV--------------------- 413

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                  +  SE+Q +AIL+++L RLTGL RD + +E   L  +I+    IL S   L G
Sbjct: 414 -----AELDFSEIQAQAILDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDG 468

Query: 500 IIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           +I +EL+++K +    RRT+IV+ +  D  DED I RED+VV +S  GY++RVPL  Y  
Sbjct: 469 VIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSL 528

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q +GGKGR G  +R+ED V+ + + +TH  +  F++ G V+  K + +   S   +GK +
Sbjct: 529 QAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIIS-ESRTGKGKLI 587

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              +SL   ER+ ++      ES     ++ F T+ G  +R   S+   + R+G+  + L
Sbjct: 588 GKYISLENDERVVSMKTRRGQESG----FLFFLTRRGIAKRLPSSELDNLTRAGRRVVTL 643

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D  DEI  +   +  +D+LL + +GQ +R      R   GR++ GV+ + L  GD++IS 
Sbjct: 644 DEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPM-GRSARGVKAMRLKDGDRIISG 702

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V                 +  RR I                                 
Sbjct: 703 EVV-----------------TEDRRPI--------------------------------- 712

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
               VSE G GKRT+  DF + +R G G++   ++  +  G L A   V+++D+II+++ 
Sbjct: 713 ---LVSETGIGKRTNFEDFTVHHRGGGGMKVMSIN--SRTGLLAAATSVSEDDEIIVMTA 767

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           KG +IRV   EIR+  R   G ++      + VV +
Sbjct: 768 KGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDL 803



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 19/201 (9%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK--EKV 603
           G  KR+P S      R G  R  V + + D +  +   S    +L  S++G   +  E  
Sbjct: 620 GIAKRLPSSELDNLTRAG--RRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDE 677

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +R P+G   ARG   +  + L  G+RI +     ED         +  ++ G  +R    
Sbjct: 678 FR-PMGR-SARG---VKAMRLKDGDRIISGEVVTEDRRP------ILVSETGIGKRTNFE 726

Query: 664 DFIQINRSGK--IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRN 720
           DF   +R G     M ++SR  +L+  T   E+D I++ T  G+ +R     IRV  GR 
Sbjct: 727 DFTVHHRGGGGMKVMSINSRTGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVL-GRT 785

Query: 721 SVGVRGISLAKGDQVISMAIV 741
           + G   + L  GD V+ +++V
Sbjct: 786 AAGSIVVRLDGGDSVVDLSVV 806



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 31/258 (12%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    K+G+ RR K+     ++R G+     D  DE L      +E+ +++ ++ G   R
Sbjct: 475 VALKGKYGDDRRTKI-----VDRVGQ-----DCSDEDL----IPREDIVVMLSRDGYLRR 520

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY----DERICYMK-HMSAQR 762
            P+    + A +   G RG  L + D+V  M +    D  +      R+  +K ++ ++ 
Sbjct: 521 VPLEDYSLQA-KGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISES 579

Query: 763 RLISGD-TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           R   G    +  SL+ND  V  ++   R QE      F+  ++ +G  KR  S +     
Sbjct: 580 RTGKGKLIGKYISLENDERVV-SMKTRRGQE----SGFLFFLTRRGIAKRLPSSELDNLT 634

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+G+      V  ++E   +  + P +  D ++LVS  G  +RV  +E R   R+ +GV 
Sbjct: 635 RAGR-----RVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSARGVK 689

Query: 882 IFSTAKDERVVSVERIRE 899
                  +R++S E + E
Sbjct: 690 AMRLKDGDRIISGEVVTE 707


>gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 867

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 356/909 (39%), Positives = 515/909 (56%), Gaps = 99/909 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   +  + K +
Sbjct: 18  IRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPSSSFSKSS 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC++
Sbjct: 78  RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL
Sbjct: 138 APLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+  G    + +P+      L+AL+ II GPDFPTGA ILGR GI++AY TGRGSI  R
Sbjct: 198 RELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATILGRKGIEDAYRTGRGSITQR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+PYQVN   + +KIA+LVR+  I  IAD+RDE S R G R+
Sbjct: 258 AVVSVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTGQRL 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   ++ G ++ ++  + +V+V
Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSIDGFIRHWITHQIDVIV 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +R H+L G   A+  LDEV+ +IR SP  + AR               L
Sbjct: 377 RRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEAR-------------VGL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL+D             +  VQ  AIL L+L RL  L R  I +E   L   + +  DI
Sbjct: 424 IDLLD-------------VDAVQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R   II  EL  + D+    RRTRI+    +M  ED I  ED+VVT++  G+ KR
Sbjct: 471 LATPERQRAIISAELSEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +RD+D V   F+ +TH  +LFF++LG VY+ K + +P G 
Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEGG 590

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    E I  ++     E +    Y+V ATK G V++  LS +     
Sbjct: 591 RDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---YLVLATKRGLVKKTPLSLYNSPRS 647

Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
            G IA+ L    D + DE++S +    + D++L ++ GQ VRF  +  ++ + GR++ GV
Sbjct: 648 GGIIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRFTATDEQLRSMGRSTSGV 707

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+     D+++SM  V H   D                                     
Sbjct: 708 RGMKFRGDDELLSME-VPHEGTD------------------------------------- 729

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L V+E G+ KRT   ++   +R   G+R   +  ++E G LV  
Sbjct: 730 ---------------LLIVTESGYAKRTPVEEYPTKSRGTLGVRVGKL--VDERGGLVGA 772

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901
             V  ++ ++++++ G L++V  +++R  +R T GV+       +R++++ R  +S   E
Sbjct: 773 LVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDDGDRIIAITRNSDSAGEE 832

Query: 902 IVDEAESTE 910
             D+A + E
Sbjct: 833 DEDDASAAE 841


>gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
          Length = 864

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/738 (43%), Positives = 463/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP H L
Sbjct: 140 APLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHTL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NP+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 200 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 260 AVVAVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +VA + EV+V
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR            ++DL
Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIAR----------GGLRDL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +  IDD               +Q  AILE++L RL  L R  I  E + L  +I E   I
Sbjct: 429 L-AIDD---------------IQANAILEMQLRRLAALERQKIVQEHDELQAKIDEYNGI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+KR
Sbjct: 473 LASPVRQRGIVSEELAALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 533 TRTEDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPEAG 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++  L D+     
Sbjct: 593 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKSGLVKKTPLKDYDSPRS 649

Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L  R     DE++  E  + ++D+LL +K  Q +RF  +   +R   GR + G
Sbjct: 650 GGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSIRFTATDDTLRPM-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 709 VKGMSFREGDELLSMNVV 726


>gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
 gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
          Length = 857

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 324/742 (43%), Positives = 460/742 (61%), Gaps = 51/742 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 4   IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC+L
Sbjct: 64  RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ ++TVDF  NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP    
Sbjct: 124 MPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPP--- 180

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            +V  G    +++PD       DAL+E I+GPDFP+GA+++GR GI+ AY TGRGSI +R
Sbjct: 181 -QVAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVVGRKGIEEAYRTGRGSITMR 239

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 240 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 298

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+V
Sbjct: 299 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 358

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 359 RRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM------------ 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L R  I  E + L  +I E  +I
Sbjct: 407 --------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNEI 452

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S SR   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT++H GYVKR
Sbjct: 453 LRSESRQRSIVSEELAAIVEKFGDDRRSKLVPFDGDMSMEDLIAEEDIVVTITHGGYVKR 512

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 513 TKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDAG 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E+I  I+   + E++    Y++ ATK G V++  L D+     
Sbjct: 573 RDARGQHVANLLAFQPDEKIAQILAIRDYEAA---PYLILATKGGLVKKTALKDYDSPRS 629

Query: 671 SGKIAMKL---------DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719
            G IA+ L          + DE++  E  + E+D+LL +K  Q +RF  +  A+R   GR
Sbjct: 630 GGVIAINLRETGADGADGAADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPM-GR 688

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
            + GV+G+S  +GD+++SM++V
Sbjct: 689 ATSGVKGMSFREGDELLSMSVV 710


>gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
 gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
          Length = 806

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 331/883 (37%), Positives = 518/883 (58%), Gaps = 93/883 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV  NK + K ARI GE
Sbjct: 7   IEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGE 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+AAIYD + RMAQDW++R  LI+GQGNFGS+D DPPAA RYTE RL K A 
Sbjct: 67  VMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIAE 126

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+TV+   N+DGS +EP VL +++PN+L NG  GIAVGM TNIP HN+ E+V+
Sbjct: 127 ELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELVN 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+I NP+I ++ LM  I GPDFPTG  I+G++GI+  Y TG+GS  IRG  H+E+  
Sbjct: 187 GLIALIKNPEISIEELMNFIPGPDFPTGGEIIGKSGIREMYTTGKGSFTIRGKVHVEEKK 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             ++ IV+TEIP+ ++KA +++KI E   EK  + I D+RDESD++G R+VIE+    + 
Sbjct: 247 -KKKNIVITEIPFNISKADLIKKIVEYA-EKSSLPIKDIRDESDKEGLRIVIEIPNDTNE 304

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           ++I+N LY++T LQS F   ++ ++   KP    L  ++ AFV  R EVV RR +Y   +
Sbjct: 305 EIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYYKQ 364

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              +AH+L GL  A  ++D ++ +IR S +  +A             I +LID+ +    
Sbjct: 365 YSKKAHILEGLIKASRSIDTIISVIRNSEDQNSA-------------IHELIDMFN---- 407

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                     +E Q +AI++LRL RLT L    + ++ N L  ++K   +++ +  ++  
Sbjct: 408 ---------FTETQAKAIVDLRLGRLTKLEISKLIDDYNDLVNKMKVEKELIENDQKVYE 458

Query: 500 IIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            I +EL ++K E    R++ I+   E  ++  + + I  +++V++++  GY+K + L  +
Sbjct: 459 KIIEELEAIKSEYGDSRKSIILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMSLDTF 518

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + QRRGGKG +G  + D+D + ++     H   LFF+S G VY    +++   S  +RG+
Sbjct: 519 KTQRRGGKGVTGSNLMDDDAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGR 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +   L++ Q E+I T++     E       + F TK+G  +R  L +F  IN  G  A+
Sbjct: 579 QIAKYLNIGQDEKILTMLSVDNFEGE-----LFFVTKNGKAKRTSLKEFENINSRGMKAI 633

Query: 677 KLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
             D  D ++SV+     +  IL+ TK G C+RFPIS +R   GRN++GV GI L+  D V
Sbjct: 634 TFDGDDLLVSVQKIDNPDQTILIATKNGLCIRFPISEVRTM-GRNAMGVIGIRLSNDDAV 692

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S ++                                  L +D                 
Sbjct: 693 VSSSL----------------------------------LMDD----------------- 701

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E ++LTV+ KG+GK T +  +RI  R G GI+  ++S I++ G +V V  V  N+ +++
Sbjct: 702 -EHYLLTVTSKGYGKLTETSQYRIQKRGGLGIK--NISDISKAGHIVGVTHVLGNENMMI 758

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +  G  +++ ++ +R   R TKGV + + ++ + +     IR
Sbjct: 759 FTKNGMTLKINLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIR 801


>gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 877

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 334/894 (37%), Positives = 527/894 (58%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I    I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  + 
Sbjct: 67  ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR  LI+G GNFGS+DGD  AA R
Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G  GIAVGMAT 
Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  NPDI +  L + +  PDFPTGA ILG +GI+ AY TGRG+ V
Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  + +I+V EIPY+V K  ++EK+ +LVR+K+I  + D+RDE++R+G R
Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV ++K+G S ++ILNQLY+ T LQ  +++NM+AL    P+   L  IL  ++  +EEVV
Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  ++ L KA++R ++L+G+ IAV N+DEV++IIR S +   A+  L QR         
Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLT L  + +  E+  L  EI+    
Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           I++S  +L+ +I      + +     RRT IV G +  + DED I  + +V+T++   Y+
Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR Q RGG G S      +D + ++ + STH+ +L  +S   +++ +  ++P 
Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN++ + + E I +++   E+    +NLY+V  +K G +++  LS + +I
Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIISLLVTQENYED-DNLYLVTVSKLGIIKKTSLSLYKRI 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +++G IA+ L   DE+L+    T+E++I++    G+ VRF     R  + R S+GV+GI+
Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + + V+  +                                  S    S+V       
Sbjct: 759 LGENEVVVGAS----------------------------------STDQGSTV------- 777

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F+L   ++G+GK+T   ++R + R GKG+      K  + G L  +  V 
Sbjct: 778 ----------FVL--GQEGYGKKTHIDEYRKTARGGKGVITL---KTEKAGNLAFISCVK 822

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRE 899
            +++I++++ +G +IR  + +    SR TKGV + +    + + SV   E+I E
Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEKIYE 876


>gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054]
          Length = 867

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 350/910 (38%), Positives = 516/910 (56%), Gaps = 105/910 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +  EMQ SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M   G    K Y KCAR+ 
Sbjct: 29  IELETEMQRSYLDYAMSVIVSRALPEVRDGLKPVHRRVLYAMYDGGYRPEKGYYKCARVV 88

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG+ +IYD L R+AQ WS+R+ L++G GNFGS   DP AA RYTEC++   
Sbjct: 89  GDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPLVDGNGNFGSPGNDPAAAMRYTECKMMPL 148

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  ++ D+ ++TVDF  NYDG  QEP VL +R PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 149 AMEMMRDIDEETVDFAANYDGRQQEPTVLPSRIPNLLVNGATGIAVGMATNIPPHNLREV 208

Query: 199 VDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             G +  +++P       L+AL+E I+GPDFPTGA+I+GR GI++AY TGRGSI +R V 
Sbjct: 209 ASGALWALEHPGASNEELLEALVERIKGPDFPTGALIVGRRGIEDAYRTGRGSITMRAVV 268

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIE 313
            +E+  G R+ +V+TE+P+QVN   +  KIA+LV++ RI  IAD+RDE S R G R+VI 
Sbjct: 269 EVEEIQG-RQCLVITELPFQVNPDNLALKIADLVKDGRIAGIADVRDESSSRTGQRLVIV 327

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +VA + EV+VRRT
Sbjct: 328 LKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIVRRT 387

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +RAH+L  L  A+  +D V+ +IR S + + AR  LM+          L+D 
Sbjct: 388 TFRLRKAEERAHILRALLKALDQIDAVIALIRASESADAARTGLMR----------LLD- 436

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          + E+Q  AILE++L RL  L    I +E + L  +I E   IL+S
Sbjct: 437 ---------------IDELQANAILEMQLRRLAALESARILSEHDELQAKINEYNAILAS 481

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +R   I+ +EL ++ ++    RR+ ++    D+  ED I  ED+VVT++  GYVKR   
Sbjct: 482 PARQREIVSEELTAIVEKYGDERRSTLIPSDGDLSIEDLIAEEDIVVTITRGGYVKRTRS 541

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
            +YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP     A
Sbjct: 542 DLYRSQKRGGKGVRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVYRAKGYELPDAGRDA 601

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + N+L+    E IT +M     E   +  Y+V AT+ G V++  L D+      G 
Sbjct: 602 RGQHVANLLAFQPEEHITQVMAVRTYE---DKPYLVLATRGGLVKKTPLKDYDSPRSGGL 658

Query: 674 IAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726
           IA+ L        DE++  E  + ++D+LL ++  Q +RF  +  A+R  + R + GV+G
Sbjct: 659 IAINLRQDEEGQGDELIGAELVSADDDLLLISRKAQSIRFKATDEALRPMS-RATSGVKG 717

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++  + D+++SM +V                           T   T+     +   ++ 
Sbjct: 718 MAFREDDELLSMNVVRPG------------------------TYVFTATDGGYAKRTSVD 753

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E R Q               GFG                 I+A  +  +   G+LV    
Sbjct: 754 EYRVQ------------GRGGFG-----------------IKAAKI--VEGRGSLVGALV 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------ 900
           V ++D+I+ ++  G +IR  V+E+R   R T GV + +  K + VV + R  E+      
Sbjct: 783 VEESDEIMAITLSGGVIRTRVSEVRETGRDTMGVQLINLGKRDAVVGMARNAEADEEEGA 842

Query: 901 -EIVDEAEST 909
            + VDE ES 
Sbjct: 843 DDTVDETESA 852


>gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 858

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 358/908 (39%), Positives = 516/908 (56%), Gaps = 100/908 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M   G   +K + KCA
Sbjct: 17  IDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYAMFDGGYRPDKAFSKCA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG++HPHG++AIYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE ++
Sbjct: 77  RVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTETKM 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+ NYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 137 APLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G +  + +P+      L+ L++ I+GPDFPTGA ILG  GI++ Y TGRGSI IR
Sbjct: 197 REVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQILGVKGIQDTYRTGRGSITIR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  IE+  G R  +VVTE+PYQVN   +  KIAELV++ R+  IAD+RDE S R G R+
Sbjct: 257 AVVSIEEIQG-RVCLVVTELPYQVNPDNLAIKIAELVKDGRVGGIADIRDETSGRTGQRL 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + EV+V
Sbjct: 316 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDNVPRTLALDGFITAWVDHQIEVIV 375

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L G   A+  LDEV+ +IR S   + AR  L          K L
Sbjct: 376 RRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDEAREGL----------KSL 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +++ D                +Q  AIL ++L RL  L R  I +E + +  +I E   I
Sbjct: 426 LEVDD----------------IQADAILAMQLRRLAALERQKIIDEHDEIERQITEFKAI 469

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L+  +R   I+ +EL  + D     RRT I+ G   DM  ED I  E+MV+TV+  GY+K
Sbjct: 470 LADSARQRSIVSEELTEIVDRFGDDRRTEIMLGFDGDMSLEDLIPEEEMVITVTRGGYIK 529

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q RGGKG  G  +R ED V   F+ +TH  +LFF+  G VY+ K + +   
Sbjct: 530 RTRSDNYRSQHRGGKGVKGAQLRGEDVVDHFFVTTTHHWLLFFTKKGRVYRAKAYEVQEA 589

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L+L   E I  I+   + E +    Y+V AT+ G +++  L ++   N
Sbjct: 590 GRDAKGQHVANLLALQPDEEIAEILDIRDYEVAQ---YLVLATRDGLIKKTALREY-DTN 645

Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726
           RSG  IA+KL   DE++S     +++D+LL ++ G  +RF  +  A+R   GR++ GV G
Sbjct: 646 RSGGIIAIKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPM-GRSTSGVIG 704

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +     D ++  ++V                                      S EG   
Sbjct: 705 MHFRGDDSLLDASVV--------------------------------------SDEG--- 723

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       ++  V+E G+ KRT++  +R+ NR G GI+   +S  ++ G LV    
Sbjct: 724 ------------YVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLS--DDRGDLVGALI 769

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV----ERIRESEI 902
           V ++D++++V   G ++R  V E+    R T GVV    A+ ++++++    ER  +S+ 
Sbjct: 770 VEEDDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARFAETDKIIALAKNTERNLDSQE 829

Query: 903 VDEAESTE 910
            D   S E
Sbjct: 830 TDADSSAE 837


>gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD]
          Length = 877

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 334/894 (37%), Positives = 527/894 (58%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I    I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  + 
Sbjct: 67  ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR  LI+G GNFGS+DGD  AA R
Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G  GIAVGMAT 
Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  NPDI +  L + +  PDFPTGA ILG +GI+ AY TGRG+ V
Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  + +I+V EIPY+V K  ++EK+ +LVR+K+I  + D+RDE++R+G R
Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV ++K+G S ++ILNQLY+ T LQ  +++NM+AL    P+   L  IL  ++  +EEVV
Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  ++ L KA++R ++L+G+ IAV N+DEV++IIR S +   A+  L QR         
Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLT L  + +  E+  L  EI+    
Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           I++S  +L+ +I      + +     RRT IV G +  + DED I  + +V+T++   Y+
Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR Q RGG G S      +D + ++ + STH+ +L  +S   +++ +  ++P 
Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN++ + + E I +++   E+    +NLY+V  +K G +++  LS + +I
Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIVSLLVTQENYED-DNLYLVTVSKLGIIKKTSLSLYKRI 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +++G IA+ L   DE+L+    T+E++I++    G+ VRF     R  + R S+GV+GI+
Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + + V+  +                                  S    S+V       
Sbjct: 759 LGENEVVVGAS----------------------------------STDQGSTV------- 777

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F+L   ++G+GK+T   ++R + R GKG+      K  + G L  +  V 
Sbjct: 778 ----------FVL--GQEGYGKKTHIDEYRKTARGGKGVITL---KTEKAGNLAFISCVK 822

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRE 899
            +++I++++ +G +IR  + +    SR TKGV + +    + + SV   E+I E
Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEKIYE 876


>gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Streptomyces coelicolor
 gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093585|prf||2104262E DNA gyrase
          Length = 864

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 323/738 (43%), Positives = 460/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+P +RDGLKPVHRR+L+ M   G    + + KCA
Sbjct: 20  VEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 80  RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++N +      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 200 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R+
Sbjct: 260 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQS F  NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIV 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM          DL
Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----------DL 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++                + E+Q  AILE++L RL  L R  I  E + L  +I E  +I
Sbjct: 429 LE----------------IDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+KR
Sbjct: 473 LASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 533 TKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++  L D+     
Sbjct: 593 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRS 649

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      S DE++  E  + E+D+LL +K  Q +RF  S   +R   GR + G
Sbjct: 650 GGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPM-GRATSG 708

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S  +GD+++SM +V
Sbjct: 709 VKGMSFREGDELLSMNVV 726


>gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 806

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 337/818 (41%), Positives = 476/818 (58%), Gaps = 104/818 (12%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMAT
Sbjct: 2   RYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMAT 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I
Sbjct: 62  NIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRI 121

Query: 249 VIRGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ 
Sbjct: 122 YMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD 181

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R 
Sbjct: 182 GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRR 241

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S 
Sbjct: 242 EVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSA 301

Query: 427 IKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E 
Sbjct: 302 VVEMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEY 360

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+
Sbjct: 361 QEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEE 420

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VVT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G 
Sbjct: 421 RVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGK 480

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------- 636
           VY  K + +P  S  ARG+ L+N+L L+ GE ITT++P                      
Sbjct: 481 VYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELD 540

Query: 637 -PEDESSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
             E+ S                   ++  +T +G V++  L  F +   SG IA++LD  
Sbjct: 541 DAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEG 600

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D ++S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM   
Sbjct: 601 DILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML-- 657

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                                                      I EE  Q        IL
Sbjct: 658 -------------------------------------------IPEEGSQ--------IL 666

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           T SE+G+GKRT+  +F    R G+G  A   ++ N  G LV    V D ++I+L+SD+GT
Sbjct: 667 TASERGYGKRTAISEFPEYKRGGQGGIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGT 724

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           L+R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 725 LVRTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 762


>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
 gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
          Length = 845

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 316/745 (42%), Positives = 458/745 (61%), Gaps = 41/745 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  E   +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCA
Sbjct: 96  ILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 155

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+Y++L RMAQD+S+R  L++G GNFGSVD DPPAA RYTECRL
Sbjct: 156 RVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYTECRL 215

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A    L DL  +TVDF PN+D S +EP +L AR P++L+NG  GIAVGMATNIP HN
Sbjct: 216 DSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHN 275

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD    +I NP+  L  L+E + GPDFPTG  ILG  GI  AY +GRG IV+RG +
Sbjct: 276 LGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTILGNQGILEAYKSGRGRIVVRGKT 335

Query: 255 HIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            IE       R  I++ EIPYQ NKA +++KIAEL  +K +  I+D+RDESDR G RVVI
Sbjct: 336 DIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTGMRVVI 395

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V+ RR
Sbjct: 396 ELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSVIERR 455

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L++A +R H++ G+ I + NLD V+++IR + N   A   L++             
Sbjct: 456 ARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKE------------ 503

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  A+L++ L RLT L R    +E   L  EI +  ++LS
Sbjct: 504 --------------FDLSEKQAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLS 549

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTV-SHLGYVKR 550
           S+  +  +I+QE   +K++  TPRR+ I + +  +++D D I  E+M++ + S  GY KR
Sbjct: 550 SKELIFQLIQQEAADLKNKFSTPRRSLIDDSVSCEVDDIDIIPNEEMLLKILSEKGYAKR 609

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++P  +
Sbjct: 610 MNPNTFSLQHRGTIGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECT 669

Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A G  L+ +L L+ GERIT+I+P   F ED+       +V  T +G +++  L+ F  
Sbjct: 670 RTATGTPLVQLLPLSDGERITSIIPVSEFGEDQC------LVMLTVNGYIKKVPLNAFSS 723

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G I+++L   DE+  V  C  ++ + L ++ G+ +      +R   GRN+ GV  +
Sbjct: 724 IRSTGIISIQLVPGDELKWVRRCGNDDLVALASQKGRVIVNSCDKLRAL-GRNTRGVYAM 782

Query: 728 SLAKGDQVISMAIVLHADADYDERI 752
            L +GD++ +M I+        E+I
Sbjct: 783 KLKEGDKMAAMDIIPATAHKMPEKI 807


>gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
 gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
          Length = 834

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 342/881 (38%), Positives = 502/881 (56%), Gaps = 88/881 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+P H
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  ++GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312
             +E+T  DRE IVV E+PY V K  + EKIA+LV++ +I  +AD+RDE S+R G R++I
Sbjct: 265 LEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L++ F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR  LM R            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL  + ++    RR+ I+    D E  +ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  S
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALS 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     E +   +   ++  TK G +++ +L       +
Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE+++V      +D ++TT  G  +R     IR   GR + GV+GISL 
Sbjct: 656 RGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKM-GRAAAGVKGISLD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                             D+ IC                           V GN      
Sbjct: 715 ------------------DDDIC---------------------------VSGNAIH--- 726

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                K + ++ ++E G GKR SS  F +  R GKG     +   N+ G +V+V  V D 
Sbjct: 727 -----KGESLIVITENGIGKRLSSKQFNVKGRGGKG--QIYIKPDNKTGNVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           D+I++V+     I++  + I    R  KGV I + +   RV
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARV 820


>gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
 gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
          Length = 817

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 356/899 (39%), Positives = 509/899 (56%), Gaps = 102/899 (11%)

Query: 11  EEEKG------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           EE+KG      +  + + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM++G
Sbjct: 2   EEKKGEPLFGKVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELG 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  N  Y K AR+ GE MGKYHPHG++AIYD + RMAQD+S+R  L++GQGNFGS+DGDP
Sbjct: 62  LRHNTAYKKSARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDP 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL +    +L D+ +DTVD+ PN+D S QEP+ L A  PN+L+NG  GIAV
Sbjct: 122 AAAMRYTEARLYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDN-PD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           GMATNIP HNL EVVD    +ID  P+ +D+  ++  + GPDFPTG +ILGR GI +AY 
Sbjct: 182 GMATNIPPHNLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLILGRDGIIDAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +RG +HIE+    +  IV+TEIPY VNK  ++E IA+ V++K I  + DLRDE
Sbjct: 242 TGRGKITMRGRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAF 361
           SDR+G R+VIE+ R    +++L QLYR T LQS F V N+  ++GY P+  ++  +L  F
Sbjct: 302 SDREGLRIVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGY-PKELSIEEMLNIF 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RRT++ L KA  RAH++ GL  A+  +DEV+ +IR S   E A+  L+ + 
Sbjct: 361 LNHRRSVVRRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISK- 419

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    +  SE Q +AILE+RL RLTGL R+ +  EL  L 
Sbjct: 420 -------------------------LDFSEAQAQAILEMRLQRLTGLEREKLEAELAQLL 454

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I+    IL +   L  +IK+ELL VK      R+T I++ + D+  ED I   D+VV 
Sbjct: 455 SDIERYQTILGNPKVLDSVIKEELLEVKRRFGNERKTEIIDAVEDVSIEDLIPESDIVVV 514

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GY++R  L  Y  Q RGGKGR G  +++ED V  + + STH  +  F+S G V   
Sbjct: 515 LSRDGYLRRKDLQEYTLQGRGGKGRKGTALQEEDEVALVAVTSTHRDIYLFTSKGRVLAL 574

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S   RGK +   ++L +GER+ T+     D +     Y  F T  G  +R  
Sbjct: 575 KGYVIP-ESKTGRGKLINRFVALEEGERVVTMHGRAVDGAK----YAFFITLRGTAKRLD 629

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS+   + R+G+  M LD  DEI  +   + ++ +L+ T  GQ +R   S  R   GR +
Sbjct: 630 LSELENLTRAGRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPM-GRTA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L K D VI   +V +                                      
Sbjct: 689 RGVRGIRLRKNDYVIGCDVVANG------------------------------------- 711

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           ++ L +SE GFGKRT   +F + +R G G+   ++S  +  G +
Sbjct: 712 ----------------RWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLS--DRTGLI 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF-----STAKDERVVSVE 895
           V  + V + D+I+ ++ +G +IR+ V+E  +  R   G ++       T     VVS E
Sbjct: 754 VGCWSVAEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTE 812


>gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 874

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 318/738 (43%), Positives = 458/738 (62%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 31  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 91  RVVGDVMGNYHPHGDSSIYDALVRLAQTWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL +R+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPSRFPNLLINGSAGIAVGMATNIPPHNL 210

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +++P+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 211 REVAAGAQWYLEHPEASNEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIPMR 270

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 271 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 329

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L+++T LQ+ FS NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 330 VVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 389

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 390 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEDARGGLM------------ 437

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L R  +  E + L   I E   I
Sbjct: 438 --------------GLLEIDEIQANAILEMQLRRLAALERQKLMQEHDELQRRIDEYHAI 483

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  + D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 484 LASPERQRQIVSDELGQIVDKFGDDRRSQLVPFDGDMSMEDLIAEEDIVVTISRSGYVKR 543

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 544 TRTDDYRSQKRGGKGVRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAG 603

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + +++    Y+V AT+ G V++  L D+     
Sbjct: 604 RDARGQHVANLLAFQPDESIAQILAIRDYDAA---PYLVLATQGGLVKKTSLKDYDSPRS 660

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      + DE++  E  + ++D+LL +K  Q +RF  +   +R   GR + G
Sbjct: 661 GGVIAINLRETDNGADDELIGAELVSADDDLLLISKKAQSIRFTATDDTLRPM-GRATSG 719

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S   GD+++SM +V
Sbjct: 720 VKGMSFRDGDELLSMNVV 737



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILT 802
           DE    +     QR+++S +  +I     D         +G++S E   +L  +E  ++T
Sbjct: 478 DEYHAILASPERQRQIVSDELGQIVDKFGDDRRSQLVPFDGDMSME---DLIAEEDIVVT 534

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ KRT + D+R   R GKG+R    +K+ E   +   F    +  ++  ++KG +
Sbjct: 535 ISRSGYVKRTRTDDYRSQKRGGKGVRG---AKLKEDDIVDHFFVTTTHHWLLFFTNKGRV 591

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            R    E+  A R  +G     + +   DE +  +  IR+
Sbjct: 592 YRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIRD 631


>gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG]
 gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF]
          Length = 874

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 319/738 (43%), Positives = 457/738 (61%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 31  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 91  RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    + +P+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIPMR 270

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 271 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 329

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L+++T LQ+ FS NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 330 VVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 389

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 390 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLM------------ 437

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L R  +  E + L   I E   I
Sbjct: 438 --------------GLLEIDEIQANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAI 483

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  + D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 484 LASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSMEDLIAEEDIVVTISRSGYVKR 543

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 544 TRTDDYRSQKRGGKGVRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAG 603

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + E++    Y+V ATK G V++  L D+     
Sbjct: 604 RDARGQHVANLLAFQPDESIAQILAIKDYEAA---PYLVLATKGGLVKKTSLKDYDSPRS 660

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      + DE++  E  + ++D+LL ++  Q +RF  +   +R   GR + G
Sbjct: 661 GGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATDDTLRPM-GRATSG 719

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S   GD+++SM +V
Sbjct: 720 VKGMSFRDGDELLSMNVV 737



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILT 802
           DE    +     QR+++  +  +I     D         +G++S E   +L  +E  ++T
Sbjct: 478 DEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSME---DLIAEEDIVVT 534

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ KRT + D+R   R GKG+R    +K+ E   +   F    +  ++  ++KG +
Sbjct: 535 ISRSGYVKRTRTDDYRSQKRGGKGVRG---AKLKEDDIVDHFFVTTTHHWLLFFTNKGRV 591

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            R    E+  A R  +G     + +   DE +  +  I++ E
Sbjct: 592 YRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633


>gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 874

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 319/738 (43%), Positives = 457/738 (61%), Gaps = 43/738 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KCA
Sbjct: 31  VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++  GNFGS   DP AA RYTEC++
Sbjct: 91  RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAVGMATNIP HNL
Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    + +P+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R
Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIPMR 270

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE S R G R+
Sbjct: 271 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 329

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN L+++T LQ+ FS NM+AL    P   +L   ++ +V  + EV+V
Sbjct: 330 VVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 389

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM            
Sbjct: 390 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLM------------ 437

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G + + E+Q  AILE++L RL  L R  +  E + L   I E   I
Sbjct: 438 --------------GLLEIDEIQANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAI 483

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  + D+    RR+++V    DM  ED I  ED+VVT+S  GYVKR
Sbjct: 484 LASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSMEDLIAEEDIVVTISRSGYVKR 543

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP   
Sbjct: 544 TRTDDYRSQKRGGKGVRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAG 603

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L+    E I  I+   + E++    Y+V ATK G V++  L D+     
Sbjct: 604 RDARGQHVANLLAFQPDESIAQILAIKDYEAA---PYLVLATKGGLVKKTSLKDYDSPRS 660

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            G IA+ L      + DE++  E  + ++D+LL ++  Q +RF  +   +R   GR + G
Sbjct: 661 GGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATDDTLRPM-GRATSG 719

Query: 724 VRGISLAKGDQVISMAIV 741
           V+G+S   GD+++SM +V
Sbjct: 720 VKGMSFRDGDELLSMNVV 737



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILT 802
           DE    +     QR+++  +  +I     D         +G++S E   +L  +E  ++T
Sbjct: 478 DEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSME---DLIAEEDIVVT 534

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S  G+ KRT + D+R   R GKG+R    +K+ E   +   F    +  ++  ++KG +
Sbjct: 535 ISRSGYVKRTRTDDYRSQKRGGKGVRG---AKLKEDDIVDHFFVTTTHHWLLFFTNKGRV 591

Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            R    E+  A R  +G     + +   DE +  +  I++ E
Sbjct: 592 YRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633


>gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
 gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
          Length = 733

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 335/811 (41%), Positives = 496/811 (61%), Gaps = 86/811 (10%)

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ N
Sbjct: 1   MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    L
Sbjct: 61  YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R  + IE TS  +E+IVVTE PY VN
Sbjct: 121 MEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVN 180

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K  + E I  L +EKRI  I  +RDES R+G R VIE++R ASA+VILN L++ TSLQ+ 
Sbjct: 181 KTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVRRDASANVILNNLFKLTSLQTN 240

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           FS NM+A+    P+  +L  I+  ++  ++EV+VRRT++   KA  RAH+L GL +A+ +
Sbjct: 241 FSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVALDH 300

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+ IIR S     A+ ELM R                            LSE Q++A
Sbjct: 301 LDEVITIIRNSETDTIAQAELMSR--------------------------FELSERQSQA 334

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL RD I++E N L   I +  DIL+   R++ IIK+E+  VK +    R
Sbjct: 335 ILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADAR 394

Query: 517 RTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RT ++ G +L +EDED I  ED+++T+S+ GY+KR+    +RAQ+RGG+G  G  + ++D
Sbjct: 395 RTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDD 454

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           FV +L   STH +VLFF++LG VY+ K + +P     A+G  ++N+L L++GE I TI+ 
Sbjct: 455 FVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIIN 514

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
             +++ +  N Y  F T+ G V+R  +S+F  I ++G  A+ L   DE+++V    +  D
Sbjct: 515 ARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENED 572

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +++ T+ G  VRF ++A+R   GR + GVRG++L +GD+V+  +                
Sbjct: 573 VIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLREGDKVVGAS---------------- 615

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  R+++G                              Q +L ++EKG+GKRT + 
Sbjct: 616 -------RIVNG------------------------------QEVLIITEKGYGKRTEAS 638

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++    R GKGI+  +++  N  G L  +  +N N+ I++++D G +IR  V  I    R
Sbjct: 639 EYPTKGRGGKGIKTANITAKN--GPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGR 696

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +T GV +    ++ ++V+V  + E EI D++
Sbjct: 697 STMGVKVMRLDQEAKIVTVALV-EQEIEDKS 726


>gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
 gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
          Length = 851

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 345/899 (38%), Positives = 522/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 12  IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RYTEC+L
Sbjct: 72  RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+      +++NP    D  L A ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 192 NELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+ SG R+ IV+TE+P+QVN   ++  IAE V   +I  I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVANGKIAGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +L  +VA + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSNYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR  L          K+L
Sbjct: 371 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ D                +Q  AIL ++L RL  L R  I +EL  +  EI +   I
Sbjct: 421 LDVDD----------------IQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL ++ ++    RRT I+    ++ DED I RE++VVT++  GY KR
Sbjct: 465 LAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIARENVVVTITATGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ G VY+ K + LP   
Sbjct: 525 TKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G V++++L+D+     
Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ+++M++V      +D     +          SG   + T++           EE 
Sbjct: 702 RGDDQLLAMSVV------HDGEFLLVA--------TSGGYGKRTAI-----------EEY 736

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +              G G  T    F+ + + GK I A  + K               
Sbjct: 737 TPQ-----------GRGGLGVMT----FKYTPKRGKLIGAISIDK--------------- 766

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +D+I  ++  G +IR  VN+IR +SRAT GV +   A D  +++++R  E +  ++A++
Sbjct: 767 DDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQA 825


>gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
 gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
          Length = 851

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 346/899 (38%), Positives = 522/899 (58%), Gaps = 91/899 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK A
Sbjct: 12  IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RYTEC+L
Sbjct: 72  RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GGIAVGMATNIP HNL
Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+      +++NP    D  L A ME ++GPDFPT  +I+G  GIK+AY TGRGSI +R
Sbjct: 192 NELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
           GV+ IE+ SG R+ IV+TE+P+QVN   ++  IAE V   +I  I+ + DE SDR G R+
Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVANGKIAGISKIEDESSDRVGMRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L  +L  +VA + EV+V
Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSNYVAHQIEVIV 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR  L          K+L
Sbjct: 371 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ D                +Q  AIL ++L RL  L R  I +EL  +  EI +   I
Sbjct: 421 LDVDD----------------IQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  EL ++ ++    RRT I+    ++ DED I RE++VVT++  GY KR
Sbjct: 465 LAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIARENVVVTITATGYAKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ G VY+ K + LP   
Sbjct: 525 TKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G V++++L+D+     
Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++   GR + GV+G+  
Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQ+++M++V      +D     +          SG   + T++           EE 
Sbjct: 702 RGDDQLLAMSVV------HDGEFLLVA--------TSGGYGKRTAI-----------EEY 736

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +              G G  T    F+ + + GK I A  + K +EI A+ +      
Sbjct: 737 TPQ-----------GRGGLGVMT----FKYTPKRGKLIGAISIDKDDEIFAITSA----- 776

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
                     G +IR  VN+IR +SRAT GV +   A D  +++++R  E +  ++A++
Sbjct: 777 ----------GGVIRTEVNQIRPSSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQA 825


>gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 808

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 331/848 (39%), Positives = 497/848 (58%), Gaps = 122/848 (14%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 12  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 71

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 72  TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 131

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 132 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 191

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK + +++ I++ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G RV
Sbjct: 192 RAKTHIEKKT-NKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 250

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 251 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 310

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 311 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 360

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 361 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 404

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 405 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 464

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 465 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 524

Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              +GKA++N+++L   E+I  I+P  + DES      + F TK+G V+R  LS++  I 
Sbjct: 525 RTVKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTNLSEYQNIR 580

Query: 670 RSGKIAMKLDSRDEILSV------------------------------------ETCTQE 693
             G  A+ LD  DE+++                                        TQ 
Sbjct: 581 SVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQG 640

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D        
Sbjct: 641 KMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND-------- 691

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                      EQ IL++S KG GKRT+
Sbjct: 692 -------------------------------------------EQEILSISAKGIGKRTN 708

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           + ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV +  IR A
Sbjct: 709 AGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKA 766

Query: 874 SRATKGVV 881
            R T GV+
Sbjct: 767 GRNTSGVI 774


>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
 gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
          Length = 880

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/905 (38%), Positives = 515/905 (56%), Gaps = 86/905 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K + KCAR+ 
Sbjct: 25  VELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHRKCARVV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVDGDPPAA 127
           GEV+GK+HPHG+ A+YDAL R+AQ            +SLR  LI G GNFGS+DGDP AA
Sbjct: 85  GEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLDGDPAAA 144

Query: 128 ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   +   LL DL  DTVDF PN+DGS +EPVV+ AR PNVL+NG  GIAVGM
Sbjct: 145 MRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGASGIAVGM 204

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EVVD   A+I NP+  ++ LME + GPDFPTG  ILG +GI +A+ TGRG
Sbjct: 205 ATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADAFRTGRG 264

Query: 247 SIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +I +RG +  E+  G   R  IV+TEIPY  NK+ ++ KIAELV  K +  ++D+RDESD
Sbjct: 265 TITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVSDIRDESD 324

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ELKRGA A V+LN LY++T+LQS FS N+V +   +PE F++  +L+ F+ F
Sbjct: 325 RAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLLEIFLDF 384

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR +  L +A  R H+L G    +  LD+VV++++ + +  +A + L Q+ +  
Sbjct: 385 RCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQAL-QKDFG- 442

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS  Q  A+L + L R+T L R+ I  E NSL  + 
Sbjct: 443 ------------------------LSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQA 478

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  ++LS++ R+L ++++E L++K+E  +PRRT + E G   +++ D I   +  +T+S
Sbjct: 479 SDLRELLSNKQRVLKVVEKEALALKNEFGSPRRTVLEEYGDGRIDNIDVIPNNESFLTLS 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR+    + AQRRG  G+SG  M+  D + D F+   H  VL FS  G VY  + 
Sbjct: 539 EKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRA 598

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P  S  + G  +I +LS+  GERIT+I P  E      + ++V  T  G ++R +L 
Sbjct: 599 YQVPECSRTSTGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYIKRTELP 655

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721
            F  I   G +A++L   DE+  V   TQ + I + ++ G  ++ P    ++R    R +
Sbjct: 656 AFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPCEFRSMR----RGA 711

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+R + + +GD++ ++ IV    + + E    +                          
Sbjct: 712 RGLRAMRIKEGDEIAAIDIV--PGSVWKESPTLL-------------------------- 743

Query: 782 EGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               +   C   K  E  ++L VSE G  KR     F     +  G+        + + +
Sbjct: 744 ---CTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDRLAS 800

Query: 841 LVAV-FPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +  V   V+D   N++I++ +  G   R  V EI I SR  +G+ +     D++V SV  
Sbjct: 801 MFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVKSVSV 860

Query: 897 IRESE 901
           +  S+
Sbjct: 861 VAASD 865


>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
 gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
          Length = 880

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/905 (38%), Positives = 514/905 (56%), Gaps = 86/905 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K + KCAR+ 
Sbjct: 25  VELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHRKCARVV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVDGDPPAA 127
           GEV+GK+HPHG+ A+YDAL R+AQ            +SLR  LI G GNFGS+DGDP AA
Sbjct: 85  GEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLDGDPAAA 144

Query: 128 ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   +   LL DL  DTVDF PN+DGS +EPVV+ AR PNVL+NG  GIAVGM
Sbjct: 145 MRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGASGIAVGM 204

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EVVD   A+I NP+  ++ LME + GPDFPTG  ILG +GI +A+ TGRG
Sbjct: 205 ATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADAFRTGRG 264

Query: 247 SIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +I +RG +  E+  G   R  I++TEIPY  NK+ ++ KIAELV  K +  ++D+RDESD
Sbjct: 265 TITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVSDIRDESD 324

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ELKRGA A V+LN LY++T+LQS FS N+V +   +PE F++  +L+ F+ F
Sbjct: 325 RAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLLEIFLDF 384

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR +  L +A  R H+L G    +  LD+VV++++ + +  +A + L       
Sbjct: 385 RCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQ------ 438

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              KD                   LS  Q  A+L + L R+T L R+ I  E NSL  + 
Sbjct: 439 ---KDF-----------------ELSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQA 478

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
               ++LS++ R+L ++++E L++K+E  +PRRT + E G   +++ D I   +  +T+S
Sbjct: 479 SNLRELLSNKQRVLRVVEKEALALKNEFGSPRRTVLEEDGDGRIDNIDVIPNNESFLTLS 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR+    + AQRRG  G+SG  M+  D + D F+   H  VL FS  G VY  + 
Sbjct: 539 EKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRA 598

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P  S  + G  +I +LS+  GERIT+I P  E      + ++V  T  G ++R +L 
Sbjct: 599 YQVPECSRTSAGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYIKRTELP 655

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721
            F  I   G +A++L   DE+  V   TQ + I + ++ G  ++ P    ++R    R +
Sbjct: 656 AFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPCEFRSMR----RGA 711

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+R + + +GD++ ++ IV    + + E    +                          
Sbjct: 712 RGLRAMRIKEGDEIAAIDIV--PGSVWKESPTLL-------------------------- 743

Query: 782 EGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               +   C+  K  E  ++L VSE G  KR     F     +  G+        + + +
Sbjct: 744 ---CTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDRLAS 800

Query: 841 LVAV-FPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +  V   V+D   N++I++ +  G   R  V EI I SR  +G+ +     D++V SV  
Sbjct: 801 MFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVKSVSV 860

Query: 897 IRESE 901
           +  S+
Sbjct: 861 VAASD 865


>gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
 gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
          Length = 795

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 333/893 (37%), Positives = 514/893 (57%), Gaps = 104/893 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ ITSV I ++M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+   ++G+  NK + 
Sbjct: 3   EQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKPHK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG+AA+YDA+ RMAQ +S R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 63  KSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+T++F  N+DGS QEP VL +R PN+LVNG  GIAVGM+T+IP 
Sbjct: 123 ARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+   + ++++ D+ ++ LME I GPDFPTG  I+G   IK AY TG+G I +RG
Sbjct: 183 HNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKIIGNDEIKKAYRTGKGRITLRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK S + E+IV+TEIPYQ+NKA ++E+IA  +++ ++ ++ ++RDESD+ G R+VI
Sbjct: 243 KTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK  A+ ++ILN+LY+YTSLQ+   +NM+AL   +PE   L  IL+ F+ FR EVV RR
Sbjct: 303 ELKSKANTEIILNRLYKYTSLQTTQRINMLALVDQQPEVMDLKTILQHFLDFRREVVTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K++DR H+L+GL  A+ NLD+V+ IIR S  P TA++ L  +            
Sbjct: 363 TEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDK------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         + +S+ Q  AIL+++L RL  L R  I  EL  L  +I+    IL+
Sbjct: 411 --------------LNVSKKQAAAILDMKLQRLVSLERKKITEELTELKEKIEALNSILN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            +  +  +IK+EL+ +K+E    R+T I+  E   ++++ D I  ED+V++ S+  Y+KR
Sbjct: 457 EKEVMDDLIKKELIEIKEEYGDERKTEIITDESKAELDESDLIKNEDIVLSFSYNKYLKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              +      R GKG         D++TD+   +T   +LFF++ G V+  K  ++P   
Sbjct: 517 ---TTDIENIRAGKG---------DYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHH 564

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             + G  L + L L   E I  I+    DE+     Y+  AT+ G +++    ++ +   
Sbjct: 565 GLSTGDPLSDYLKLPLDEEIVDILILT-DETKEK--YITIATEEGLIKKTVGKEY-ETTV 620

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           S   A+ L+  DE++  +    + ++LL TK GQ + F   +I    GRN+ G +GI LA
Sbjct: 621 SSIKAINLNEEDEVIGAKVTDGQQNLLLGTKGGQTIHFSEDSIS-DTGRNTKGSKGIDLA 679

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VIS    L A+++Y                                          
Sbjct: 680 ENDKVISFN--LTANSNY------------------------------------------ 695

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++T +  G   RT    ++I NR+GKG++       N+   ++ +   +  
Sbjct: 696 ---------VITATADGRATRTDINAYQIQNRNGKGLKTL----TNDSYEVIDIITASKE 742

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRESE 901
           D+++ V+++G L   PV+EI    R  +    F    D  + V+ + ++ ++E
Sbjct: 743 DKLLFVTEEGQLEEAPVSEITETERVGRMYTQFKLDDDKIKEVIRLPQLNKTE 795


>gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 816

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 328/886 (37%), Positives = 502/886 (56%), Gaps = 89/886 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + +E+++SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ + K A
Sbjct: 14  VIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE MGKYHPHG+AAIY+ + RM+QD+S+R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 74  RVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ +DTVD+ PN+D S +EP VL +R PN+LVNG  GIAVGMATN+P HNL
Sbjct: 134 HSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD C  ++DNPD+++  LM  + GPDFPTG VI+GR GI +AY TGRG IV+RG + 
Sbjct: 194 REVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIVVRGCAE 253

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     ++ IV+T+IPY VNK+ ++E I + V+  ++  I D+RDES+R+G R+V+EL 
Sbjct: 254 IEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGIRLVLELH 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R +   ++L QLY  T LQ+ F V  +AL   +P    L G+L+ F+  R  VV RRT+Y
Sbjct: 314 RDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMVVRRRTQY 373

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL  A+  +D V+ +IR S +P  A+  L++                
Sbjct: 374 RLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE--------------- 418

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                      +  +E Q +AIL++RL RLT L +  ++ EL  L  +I     IL   +
Sbjct: 419 -----------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPA 467

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  ++++ELL VK      RRT I + + D+  ED I   ++VV ++  G+++R+PL  
Sbjct: 468 ELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVVAMTRDGFIRRMPLQD 527

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-R 614
           YR Q RGGKG  G  ++ ED V+ + + +TH S+  F+  G V+  K   +P   P++ R
Sbjct: 528 YRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIP--EPKSGR 585

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK +   +SL++GE + T      D +     +V   TK G  +R  + +   I R+G+ 
Sbjct: 586 GKHVSTFISLDEGESVVTF----RDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRR 641

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + L+  D I  V     E+ +LLTT  GQ +R   +  R   GR + GVRGI L   D 
Sbjct: 642 ILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRP-QGRAAKGVRGIKLDPDDL 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +++        ++ ++  +   +R                               
Sbjct: 701 VVGCDVIMPG-----RQVLFISQLGMGKR------------------------------- 724

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                            T   +F + +R G G+RA  + +    G LV  + V D+D+I+
Sbjct: 725 -----------------TRYEEFTVHHRGGMGVRAMRLGE--RTGHLVGAWGVADDDEIM 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ +G ++R    ++   SR+  G+ +    + ++V  V  IR S
Sbjct: 766 VITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRCS 811



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 24/190 (12%)

Query: 518 TRIVEGLLDMEDEDCIVR------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
           TR    +L +E++D I R      ED ++  +  G   RV  + +R Q R  KG  G+ +
Sbjct: 636 TRAGRRILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGVRGIKL 695

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
             +D V    ++     VLF S LG   + +     +     RG   + + ++  GER  
Sbjct: 696 DPDDLVVGCDVIMPGRQVLFISQLGMGKRTRYEEFTV---HHRGG--MGVRAMRLGERTG 750

Query: 632 TIMPFPEDESSW---NNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEI-- 684
            ++       +W   ++  ++  T  G V R    D   ++RS  G   ++LD  D++  
Sbjct: 751 HLV------GAWGVADDDEIMVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVAD 804

Query: 685 LSVETCTQEN 694
           ++V  C+ E 
Sbjct: 805 VTVIRCSMEE 814


>gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 850

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 348/898 (38%), Positives = 507/898 (56%), Gaps = 96/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K +
Sbjct: 18  VRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPASSFSKSS 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC++
Sbjct: 78  RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL
Sbjct: 138 APLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            E+  G    +D+        L+AL+++I GPDFPTGA ILG  GI++AY TGRGSI  R
Sbjct: 198 RELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATILGHKGIEDAYRTGRGSITQR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R+ +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE S R G R+
Sbjct: 258 AVVSVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQIQGIADIRDETSGRTGQRL 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY+ T LQ  FS NM+AL    P   ++ G ++ ++  + +V+V
Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTPLQENFSANMLALVDGVPRTLSIDGFIRHWITHQIDVIV 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +R H+L G   A+  LDEV+ +IR SP  + AR               L
Sbjct: 377 RRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVDEAR-------------AGL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           IDL+D             +  VQ  AIL L+L RL  L R  I +E   L   + +  DI
Sbjct: 424 IDLLD-------------VDAVQADAILALQLRRLAALERQKILDEHAQLKARVDDLRDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L    R   II +EL  + D+    RRT I+    +M  ED I  ED+VVT++  G+ KR
Sbjct: 471 LDKPERQRTIISEELSEIVDKFGDERRTTILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                YR+Q+RGGKG  G  +R  D V   F+ +TH  +LFF++LG VY+ K + +P G 
Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRGGDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEGG 590

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+    ERI  ++     E +    ++V ATK G V+++ L+ +     
Sbjct: 591 RDAKGQHVANLLAFQPDERIAQVLAIRTYEDAD---HLVLATKSGLVKKSPLALYNSPRS 647

Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
            G IA+ L      + DE++S +T   + D++L ++ GQ VRF  +  ++   GR++ GV
Sbjct: 648 GGIIAINLREDEAGNPDELVSAQTIMADQDLILVSRDGQAVRFAATDEQLRPMGRSTSGV 707

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+     D+++SM +                                        VEG 
Sbjct: 708 RGMKFRGDDELLSMEV---------------------------------------PVEGT 728

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L V+E G+ KRT   ++   +R   G+R   +S  +E G LV  
Sbjct: 729 --------------DLLIVTESGYAKRTPVAEYPTKSRGTMGVRVGKLS--DERGGLVGA 772

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             V  ++ ++++++ G L++V  +++R  SR T GV+      D+R++++ R  +S +
Sbjct: 773 LVVKPDEDVMVITESGKLVQVNASDVRPTSRNTMGVIFARPDADDRIIAITRNSDSTV 830


>gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 353/900 (39%), Positives = 505/900 (56%), Gaps = 95/900 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  +   +K +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 32  EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   
Sbjct: 91  GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA+RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GI
Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HN+ EV  G    +++P+      L+AL+  + GPDFPTGA ILGR GI+
Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG I +R V ++E+  G R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD
Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQG-RTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIAD 329

Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G 
Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +  +V  + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L
Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     K+L+D IDD               VQ +AIL+++L +L  L    I++E 
Sbjct: 450 ----------KELLD-IDD---------------VQAQAILQMQLRQLAALESQKIQDEY 483

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVRE 536
           + L  +I E   IL S  R   +I +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV+++  GYVKR  +  YR+Q RGGKG  G  +R +D V  L  VSTH  +LFF++ G
Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFG 603

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G 
Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVD---YGRAPYLVLATRGGL 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714
           V++  L D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +  A+R
Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D +++M                                    
Sbjct: 721 PM-GRATSGVTGMKFRDDDSLLTM------------------------------------ 743

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    ++ EE        + ++ TV++ GF KRT   ++R+ NR G GI+   +  
Sbjct: 744 ---------DVVEE--------DGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL-- 784

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++ G L     V ++ ++++V   G ++R  V  +    R T GV+     K +R+V+V
Sbjct: 785 VDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAV 844



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 16/145 (11%)

Query: 761 QRRLISGDTEEITSLKND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           QR +IS +  EI +   D       +  +G++S    ++L  +E+ +++++  G+ KRT 
Sbjct: 503 QREVISEELAEIVAKHGDDRRTEIMAGFDGDMS---IEDLIPEEEMVVSITRGGYVKRTR 559

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +R   R GKG+R   +   + +  L+    V+ +  ++  ++ G + R+   E+  A
Sbjct: 560 IDQYRSQARGGKGVRGATLRGDDVVEHLLT---VSTHHWLLFFTNFGRVYRIKTYELLEA 616

Query: 874 SRATKG---VVIFSTAKDERVVSVE 895
            R  KG     + +   DER+  ++
Sbjct: 617 GRDAKGQHVANLLAFQPDERIAQIQ 641


>gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000]
 gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000]
          Length = 832

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 344/884 (38%), Positives = 499/884 (56%), Gaps = 94/884 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGSVD DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+P H
Sbjct: 145 RMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  I+GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312
             IE+T  DRE IVV E+PY V K  + EKIAELV++ +I  +AD+RDE S+R G R++I
Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L+  F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLWKHTDLEITFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N E AR  LM +            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSK------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL ++ ++    RR+ I+    D E  +ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKNIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  +
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598

Query: 611 PQARGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ++GK++  IL+L   E+IT   T+  F   +S      ++  TK G +++ +L     
Sbjct: 599 KTSQGKSIKFILNLAPDEKITSYFTVSDFNPKQS------IIMVTKMGTIKKMELKHLEN 652

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             + G +A+ L++ DE++ V      +D ++TT  G  +R     +R   GR + GV+GI
Sbjct: 653 AKKRGILALTLENNDELIGVSAVESGDDFIMTTASGLALRINEQKVRNM-GRAAAGVKGI 711

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D                  IC                           V GN   
Sbjct: 712 TLDDND------------------IC---------------------------VSGNGIH 726

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   K + ++ ++E G GKR SS  F    R GKG     +   N+ G +V+V  V
Sbjct: 727 --------KGESLIVITENGIGKRLSSKQFNAKGRGGKG--QIYIKPDNKTGNVVSVKTV 776

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            D D+I++V+     I++  + I    R  KGV I + +   +V
Sbjct: 777 GDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGAKV 820


>gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
          Length = 898

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 352/900 (39%), Positives = 504/900 (56%), Gaps = 95/900 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  +   +K +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 32  EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   
Sbjct: 91  GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA+RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GI
Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HN+ EV  G    +++P+      L+AL+  + GPDFPTGA ILGR GI+
Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG I +R V ++E+  G R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD
Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQG-RTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIAD 329

Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G 
Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +  +V  + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L
Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     K+L+D IDD               VQ +AIL+++L +L  L    I++E 
Sbjct: 450 ----------KELLD-IDD---------------VQAQAILQMQLRQLAALESQKIQDEY 483

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVRE 536
           + L  +I E   IL S  R   +I +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV+++  GYVKR  +  YR+Q RGGKG  G  +R +D V     VSTH  +LFF++ G
Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFG 603

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G 
Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVD---YGRAPYLVLATRGGL 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714
           V++  L D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +  A+R
Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D +++M                                    
Sbjct: 721 PM-GRATSGVTGMKFRDDDSLLTM------------------------------------ 743

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    ++ EE        + ++ TV++ GF KRT   ++R+ NR G GI+   +  
Sbjct: 744 ---------DVVEE--------DGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL-- 784

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++ G L     V ++ ++++V   G ++R  V  +    R T GV+     K +R+V+V
Sbjct: 785 VDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAV 844



 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 16/145 (11%)

Query: 761 QRRLISGDTEEITSLKND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           QR +IS +  EI +   D       +  +G++S    ++L  +E+ +++++  G+ KRT 
Sbjct: 503 QREVISEELAEIVAKHGDDRRTEIMAGFDGDMS---IEDLIPEEEMVVSITRGGYVKRTR 559

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +R   R GKG+R   +   + +   +    V+ +  ++  ++ G + R+   E+  A
Sbjct: 560 IDQYRSQARGGKGVRGATLRGDDVVEHFLT---VSTHHWLLFFTNFGRVYRIKTYELLEA 616

Query: 874 SRATKG---VVIFSTAKDERVVSVE 895
            R  KG     + +   DER+  ++
Sbjct: 617 GRDAKGQHVANLLAFQPDERIAQIQ 641


>gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 352/900 (39%), Positives = 504/900 (56%), Gaps = 95/900 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  +   +K +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 32  EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   
Sbjct: 91  GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA+RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GI
Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HN+ EV  G    +++P+      L+AL+  + GPDFPTGA ILGR GI+
Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG I +R V ++E+  G R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD
Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQG-RTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIAD 329

Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G 
Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +  +V  + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L
Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     K+L+D IDD               VQ +AIL+++L +L  L    I++E 
Sbjct: 450 ----------KELLD-IDD---------------VQAQAILQMQLRQLAALESQKIQDEY 483

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVRE 536
           + L  +I E   IL S  R   +I +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV+++  GYVKR  +  YR+Q RGGKG  G  +R +D V     VSTH  +LFF++ G
Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFG 603

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G 
Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVD---YGRAPYLVLATRGGL 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714
           V++  L D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +  A+R
Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D +++M                                    
Sbjct: 721 PM-GRATSGVTGMKFRDDDSLLTM------------------------------------ 743

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    ++ EE        + ++ TV++ GF KRT   ++R+ NR G GI+   +  
Sbjct: 744 ---------DVVEE--------DGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL-- 784

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++ G L     V ++ ++++V   G ++R  V  +    R T GV+     K +R+V+V
Sbjct: 785 VDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAV 844



 Score = 41.2 bits (95), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 16/145 (11%)

Query: 761 QRRLISGDTEEITSLKND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           QR +IS +  EI +   D       +  +G++S    ++L  +E+ +++++  G+ KRT 
Sbjct: 503 QREVISEELAEIVAKHGDDRRTEIMAGFDGDMS---IEDLIPEEEMVVSITRGGYVKRTR 559

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +R   R GKG+R   +   + +   +    V+ +  ++  ++ G + R+   E+  A
Sbjct: 560 IDQYRSQARGGKGVRGATLRGDDVVEHFLT---VSTHHWLLFFTNFGRVYRIKTYELLEA 616

Query: 874 SRATKG---VVIFSTAKDERVVSVE 895
            R  KG     + +   DER+  ++
Sbjct: 617 GRDAKGQHVANLLAFQPDERIAQIQ 641


>gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A
 gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 813

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 328/881 (37%), Positives = 492/881 (55%), Gaps = 87/881 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +SI  E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++    KCA
Sbjct: 12  LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+V+G +HPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RYTE ++
Sbjct: 72  KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +++D+ K+TV F PN+D S  EP VL  R+P +L NG  GIAVGM TN+P HNL
Sbjct: 132 ARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+     A I+NP++ +  L + I GPDFPTG +I G+ GI+ +Y TGRG IV+R    
Sbjct: 192 REIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARFT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIEL 314
           IE  S  R+ I+ TE+PYQVN   ++ +I EL R K I  IA++ DE SDR G R+V+EL
Sbjct: 252 IETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G  A V+LN L+  T LQS F+V  +AL   +P   TL  +++ FV  R +VV RR  
Sbjct: 312 KKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRAH 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++R H++  L  A+  +D+++ +IR S N E A++ L ++              
Sbjct: 372 FELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQ-------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                            VQ +AI+++++ RLTGL  + +R EL  L   I    ++L+S 
Sbjct: 418 ------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELISSLEELLTSP 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPL 553
            ++LG++K+E   + D     RRT IV   ++  D ED I +E+MV+ +SHLGY+KRVP+
Sbjct: 466 QKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPV 525

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR Q RGGKG S   +   DF++ +F  STH  V+F +S G  Y  KV+ +P      
Sbjct: 526 SAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRAN 585

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  + ++L +   E IT I+   E     N  YV  AT  G V++    +F+     G 
Sbjct: 586 RGSHIKSLLMVATDEEITAIVSLRE---FSNKSYVFMATARGVVKKVTTDNFVNAKTRGI 642

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+KL   D ++S      E++++L T+ G+ +R     +R   GRNS GV GI L   D
Sbjct: 643 IALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREM-GRNSSGVIGIKLTSED 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V   A VL               +S QR+                              
Sbjct: 702 LV---AGVL--------------RVSEQRK------------------------------ 714

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L ++E G+GKR S  +F +  R   G +    ++ +  GA++    V D D+ 
Sbjct: 715 ------VLIMTENGYGKRVSFSEFSVHGRGTAGQKI--YTQTDRKGAIIGALAVLDTDEC 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + ++ +G  IRV V  I +  R  +GV +      + VV +
Sbjct: 767 MCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGL 807



 Score = 38.9 bits (89), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 16/224 (7%)

Query: 683 EILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           E L VE   Q+ + ++L + LG   R P+SA R    R   G    +LA  D +    I 
Sbjct: 497 EYLDVEDFIQKEEMVILISHLGYIKRVPVSAYR-NQNRGGKGSSSANLAAHDFI--SQIF 553

Query: 742 LHADADY------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
             +  DY        R  ++K         +     I SL   ++ E   +    +E   
Sbjct: 554 TASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSN 613

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           K  ++   + +G  K+ ++ +F   N   +GI A  +S  +    LV+   V D D+++L
Sbjct: 614 K-SYVFMATARGVVKKVTTDNF--VNAKTRGIIALKLSGGD---TLVSAVLVQDEDEVML 667

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++ +G  +R+   E+R   R + GV+      ++ V  V R+ E
Sbjct: 668 ITRQGKALRMSGREVREMGRNSSGVIGIKLTSEDLVAGVLRVSE 711


>gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8]
          Length = 829

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 334/896 (37%), Positives = 514/896 (57%), Gaps = 91/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  +  +   E      +SI  EM+ S++ YA++VI+ RAIPD+RDGLKPVHRR L+ M
Sbjct: 1   MTSEVPPAGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG   +K   K AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R  L++GQGNFGSV
Sbjct: 61  WDMGNTSDKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL+DL K+TV+F PNYD S +EP VL ++ PN+LVNG  
Sbjct: 121 DGDAAAASRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTD 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT +P HNL EV       +D P + ++ L++I+ GPDFPTG +++G  G+KN 
Sbjct: 181 GIAVGMATKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILMGVDGVKNI 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           YATG+G IV+RGV+ IE++ G    ++I+VTE+PYQVNKA  +  IA++V++K++  I+D
Sbjct: 241 YATGQGRIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESD+ G RVV EL++G  + VILN LYR+T+L+S FS   +A+    P+   L  +L
Sbjct: 301 IRDESDKDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVDGTPKLLNLPALL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EV+ RR+++ L K ++R H+L GL  A+A++D+++  IR S   + AR  L+
Sbjct: 361 GNFVHHRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALI 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L E+Q  AIL+++L RL  L +  I +E +
Sbjct: 421 S--------------------------GFGLDELQANAILQMQLRRLAALEQQKIVDEKS 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           +L  EI +   IL+S   +   I++E   +  +    RRT I     D+  ED I  + +
Sbjct: 455 TLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLSTEDLIEDKTV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V+++   Y+KR+ L  YR QRRGG G +G+  +++D V+ +F       +L F+++G V
Sbjct: 515 LVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDVVSSVFAAGMKDYLLCFTNIGRV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+++P  S  A+GK ++N+L+L + E +TT++P  E      + Y++FAT+ G V 
Sbjct: 575 YWLKVYQIPESSRIAKGKPIVNLLNL-KDEVVTTVIPIRE---FRKDRYLLFATQLGQVI 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +    +F     +G  A++L   D+++ V T     +++L+T+ G  +RF    +R+  G
Sbjct: 631 KIPQDEFSFPRSTGTNAIRLRENDKLVDVITTDNTKEVVLSTRFGYGLRFHEDTVRI-VG 689

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV G+ L +G+  I +A+ L                                    
Sbjct: 690 RGASGVIGMRL-RGNDTI-VALTL------------------------------------ 711

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                           +++  +L++++ GFGKRT   DFR   R+  G++   V +    
Sbjct: 712 ----------------VEKDHLLSITDAGFGKRTEFDDFRGHGRATMGVKNMQVER---- 751

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++    V D D+I +++  G +IR  VN IRI  R  KGV I    + ++V+ V
Sbjct: 752 DVVIHSRAVADTDEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDKVIGV 807


>gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
 gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
          Length = 808

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 330/881 (37%), Positives = 501/881 (56%), Gaps = 93/881 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S +I DE+   Y+ Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++G+  N +  KCA
Sbjct: 4   ILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+A++YDAL R+AQ +S+R  L+ GQGNFGS+D DPPAA RYTE +L
Sbjct: 64  RIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAKL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L DL K+TV    N+D S  EP VL ++ PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 124 SELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+    +I+NP+  +  L+ II+GPDFPTGA+I+    +   YATG+G IV+RG  H
Sbjct: 184 QEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNGNELTEVYATGKGRIVLRGKVH 243

Query: 256 IEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E+  G R   +V+TEIPY V+KAA++E+IA    +   + I ++RDESD+ G R+V+E+
Sbjct: 244 FEE--GKRFNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVEI 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            + A+A++ILN LY++TSLQ+ FSV M+ ++G +P+   L  +LKAF+  R +V+ +R +
Sbjct: 302 PKNANAEIILNNLYKHTSLQTSFSVQMLVIDGRRPKLMNLSQLLKAFIKHRFDVIRKRAE 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L     RAH+L G+  A   +  VV I+R S + E A + L++               
Sbjct: 362 YELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIE--------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + ++  Q +AIL++RL RLTGL  + ++ E + L  +I++  DILS  
Sbjct: 407 -----------ALSITNEQAKAILDMRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRD 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+  ++ QEL  +K +    RRT+I  +   L    ED I  ED+V+T++  GY+K   
Sbjct: 456 ERVYNVMYQELEELKKKYADERRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTS 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR+QRRGGKG  G    ++D +  +     H+  LF +S G  Y  K + + +    
Sbjct: 516 LKDYRSQRRGGKGIVGARTAEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRD 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GK +   L+L + E + T++ F E    W    +V  TK G ++R  L +F      G
Sbjct: 576 TKGKPIRAYLNLEEDESVLTMISFDE----WKG-DLVLVTKSGRIKRTPLKEFENTTSRG 630

Query: 673 KIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+     D ++S    + E+D I++ TK G  +RFP+  +R   GR+++GV GI L +
Sbjct: 631 IRAITFSDSDVVVSATLSSSESDQIIIATKNGMAIRFPLKDVRQM-GRSAMGVIGIRLRE 689

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M                                             N+ +E C+
Sbjct: 690 KDEVVGMV--------------------------------------------NVPDENCE 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-N 850
                   ILT++ +GFGKRT   D+R+ +R G GI+   +  + + G L  +  V D  
Sbjct: 706 --------ILTITVRGFGKRTPVNDYRVQSRGGVGIKT--MPGVEKAGQLCGIDIVADPK 755

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +I+++  G  IR  ++ +   SR  +GV I   + D+ V
Sbjct: 756 SDVIVMTKNGQSIRFNLSTVSQLSRTARGVKIVDLSGDDEV 796



 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++EKG+ K TS  D+R   R GKGI     ++ +EI   + V     +
Sbjct: 493 EDLIPNEDVVITLTEKGYLKSTSLKDYRSQRRGGKGIVGARTAEDDEI---LTVCTSKMH 549

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSV 894
            Q + V+  G    +   EI +  R TKG  I    +  +DE V+++
Sbjct: 550 SQTLFVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTM 596


>gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 847

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 339/908 (37%), Positives = 504/908 (55%), Gaps = 101/908 (11%)

Query: 3   EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           E II SD     E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++
Sbjct: 13  EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   N  Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNF
Sbjct: 73  YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS     PAA RYTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+N
Sbjct: 133 GSPGNLGPAAPRYTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV D     + NP+      L A ++ I+GPDFPTGA ILG
Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI+  Y TGRGSI  R V ++E+ +G R  +V TE+PYQVN   +  KIA+LV++ ++
Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEELNG-RTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE SDR G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   
Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++ G +  ++A + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E 
Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM                            + + EVQ  AIL L+L RL  L R  
Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  ++ +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED 
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED+VVT++  GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF
Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V AT
Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV---SSFADKDYLVLAT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DS---RDEILSVETCTQENDILLTTKLGQCVR 707
           + G V++ +L+D+      G IA+KL  DS    D+++S       +D++L ++ GQ +R
Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702

Query: 708 FPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+     D++++M +V   +AD                   
Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRADDELLTMDVV-RPEADL------------------ 743

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                           F++T  E G+ KRT+  ++R+  R G G
Sbjct: 744 --------------------------------FVVT--EGGYAKRTALSEYRVQGRGGLG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++  +   G LV      ++ +++++   G ++R  V+E+    R T+GV+     
Sbjct: 770 IKVANL--VEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAV 827

Query: 887 KDERVVSV 894
           + ++V+++
Sbjct: 828 EGDKVIAI 835



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 19/170 (11%)

Query: 741 VLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGNISEERC 790
           +L   A+ + ++   K + A    QR ++S +  EIT    D         +G +S E  
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSME-- 523

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +L  +E  ++T++  G+ KRT    +R  +R GKGI+   + + +++      F  + +
Sbjct: 524 -DLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHF---FTTSSH 579

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           D ++  ++ G + R    EI    R +KG     + +   DER+  V ++
Sbjct: 580 DWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV 629



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGG----KGRSGVVMRDEDFVT--------DLFIV 583
           +D +V  + LG+VK+  L+ Y   R GG    K R       +  V+        DL +V
Sbjct: 635 KDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILV 694

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESS 642
           S H   L F++      E++       P  R  + +  +     + + T+ +  PE    
Sbjct: 695 SRHGQSLRFNAC----DEQL------RPMGRATSGVTGMRFRADDELLTMDVVRPE---- 740

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLT 699
             +L+VV  T+ G  +R  LS++    R G   K+A  +++R +++      +++++L+ 
Sbjct: 741 -ADLFVV--TEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVI 797

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              G+ VR  +  +    GRN+ GV      +GD+VI  AI L+ D D
Sbjct: 798 MAGGKIVRSRVDEVS-RTGRNTQGVIFSRAVEGDKVI--AITLNVDND 842


>gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 847

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 339/908 (37%), Positives = 504/908 (55%), Gaps = 101/908 (11%)

Query: 3   EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           E II SD     E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++
Sbjct: 13  EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   N  Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNF
Sbjct: 73  YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS     PAA RYTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+N
Sbjct: 133 GSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV D     + NP+      L A ++ I+GPDFPTGA ILG
Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI+  Y TGRGSI  R V ++E+ +G R  +V TE+PYQVN   +  KIA+LV++ ++
Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEELNG-RTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE SDR G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   
Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++ G +  ++A + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E 
Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM                            + + EVQ  AIL L+L RL  L R  
Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  ++ +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED 
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED+VVT++  GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF
Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V AT
Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV---SSFADKDYLVLAT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DS---RDEILSVETCTQENDILLTTKLGQCVR 707
           + G V++ +L+D+      G IA+KL  DS    D+++S       +D++L ++ GQ +R
Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702

Query: 708 FPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+     D++++M +V   +AD                   
Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRADDELLTMDVV-RPEADL------------------ 743

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                           F++T  E G+ KRT+  ++R+  R G G
Sbjct: 744 --------------------------------FVVT--EGGYAKRTALSEYRVQGRGGLG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++  +   G LV      ++ +++++   G ++R  V+E+    R T+GV+     
Sbjct: 770 IKVANL--VEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAD 827

Query: 887 KDERVVSV 894
           + ++V+++
Sbjct: 828 EGDKVIAI 835



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 19/170 (11%)

Query: 741 VLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGNISEERC 790
           +L   A+ + ++   K + A    QR ++S +  EIT    D         +G +S E  
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSME-- 523

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +L  +E  ++T++  G+ KRT    +R  +R GKGI+   + + +++      F  + +
Sbjct: 524 -DLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHF---FTTSSH 579

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           D ++  ++ G + R    EI    R +KG     + +   DER+  V ++
Sbjct: 580 DWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV 629



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGG----KGRSGVVMRDEDFVT--------DLFIV 583
           +D +V  + LG+VK+  L+ Y   R GG    K R       +  V+        DL +V
Sbjct: 635 KDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILV 694

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESS 642
           S H   L F++      E++       P  R  + +  +     + + T+ +  PE    
Sbjct: 695 SRHGQSLRFNAC----DEQL------RPMGRATSGVTGMRFRADDELLTMDVVRPE---- 740

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLT 699
             +L+VV  T+ G  +R  LS++    R G   K+A  +++R +++      +++++L+ 
Sbjct: 741 -ADLFVV--TEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVI 797

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              G+ VR  +  +    GRN+ GV      +GD+VI  AI L+ D D
Sbjct: 798 MAGGKIVRSRVDEVS-RTGRNTQGVIFSRADEGDKVI--AITLNVDND 842


>gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 847

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 339/908 (37%), Positives = 504/908 (55%), Gaps = 101/908 (11%)

Query: 3   EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           E II SD     E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++
Sbjct: 13  EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   N  Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNF
Sbjct: 73  YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS     PAA RYTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+N
Sbjct: 133 GSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV D     + NP+      L A ++ I+GPDFPTGA ILG
Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI+  Y TGRGSI  R V ++E+ +G R  +V TE+PYQVN   +  KIA+LV++ ++
Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEELNG-RTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE SDR G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   
Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++ G +  ++A + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E 
Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM                            + + EVQ  AIL L+L RL  L R  
Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  ++ +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED 
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED+VVT++  GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF
Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V AT
Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV---SSFTDKDYLVLAT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DS---RDEILSVETCTQENDILLTTKLGQCVR 707
           + G V++ +L+D+      G IA+KL  DS    D+++S       +D++L ++ GQ +R
Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702

Query: 708 FPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+     D++++M +V   +AD                   
Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRADDELLTMDVV-RPEADL------------------ 743

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                           F++T  E G+ KRT+  ++R+  R G G
Sbjct: 744 --------------------------------FVVT--EGGYAKRTALSEYRVQGRGGLG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++  +   G LV      ++ +++++   G ++R  V+E+    R T+GV+     
Sbjct: 770 IKVANL--VEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAD 827

Query: 887 KDERVVSV 894
           + ++V+++
Sbjct: 828 EGDKVIAI 835



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 19/170 (11%)

Query: 741 VLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGNISEERC 790
           +L   A+ + ++   K + A    QR ++S +  EIT    D         +G +S E  
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSME-- 523

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +L  +E  ++T++  G+ KRT    +R  +R GKGI+   + + +++      F  + +
Sbjct: 524 -DLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHF---FTTSSH 579

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           D ++  ++ G + R    EI    R +KG     + +   DER+  V ++
Sbjct: 580 DWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV 629



 Score = 46.2 bits (108), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGG----KGRSGVVMRDEDFVT--------DLFIV 583
           +D +V  + LG+VK+  L+ Y   R GG    K R       +  V+        DL +V
Sbjct: 635 KDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILV 694

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESS 642
           S H   L F++      E++       P  R  + +  +     + + T+ +  PE    
Sbjct: 695 SRHGQSLRFNAC----DEQL------RPMGRATSGVTGMRFRADDELLTMDVVRPE---- 740

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLT 699
             +L+VV  T+ G  +R  LS++    R G   K+A  +++R +++      +++++L+ 
Sbjct: 741 -ADLFVV--TEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVI 797

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              G+ VR  +  +    GRN+ GV      +GD+VI  AI L+ D D
Sbjct: 798 MAGGKIVRSRVDEVS-RTGRNTQGVIFSRADEGDKVI--AITLNVDND 842


>gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776]
          Length = 938

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 346/893 (38%), Positives = 518/893 (58%), Gaps = 25/893 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V+I  EM+ SY+TYA++VI+ RA+PD RDGLKP  RRIL  M  + +  N   VKCA
Sbjct: 13  ILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGPNSGRVKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+  G YHPHG+ +IY  L R+AQ+W++R  LI+ QGNFGS+ G PPAA RYTE RL
Sbjct: 73  KICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPPAAMRYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +LDDL +DTVD+   YD   +EPVVL +R+PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 133 SAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVGMATSIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV    + ++++P+  +D LME++ GPDFPTG +I GR GI+  Y TGR ++ +R  + 
Sbjct: 193 AEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIICGRYGIRQGYLTGRSTLTLRAKTR 252

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR--QGYRVVIE 313
              T  + + I VTEIPY   +  + EK+ +LVR+ +I  I+ + D +DR    ++V + 
Sbjct: 253 F-LTEKNTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLTDRTTPAWQVCLH 311

Query: 314 --LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +VILNQL++Y+ LQS FSV ++AL+G +P+   +  ++  F+  R  V+ R
Sbjct: 312 IVLKRDADKEVILNQLFQYSPLQSTFSVILLALSGNRPKTMNIKELIGEFIRHRITVIRR 371

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +T++ L +AR R H + GL IA  N+DEV++ IR S +   A +E +Q     S +  + 
Sbjct: 372 KTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEA-KERLQAILVPSAM--VA 428

Query: 432 DLIDDSSYT-----IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
             + D+ +       G   T  LS  QT AI+ ++L  L  L ++ +R E   L  +I  
Sbjct: 429 RALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGEHQRLIEDIFG 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
            L +LS  + +  +I++E+  + D+    RRT I E  L D++ ED I  E MVVT+S  
Sbjct: 489 YLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKEDLIPEEMMVVTLSQR 548

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+  Y+AQ RGG+G  G    DED + DLFI STH  +LFF+  G V+ +KV+ 
Sbjct: 549 GYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFTDKGRVFWQKVYD 608

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ++G+AL+N+LSL +GE++ T +      +   N Y+V AT+ G V++  L  +
Sbjct: 609 LPLQSRTSKGRALVNLLSLQEGEQVATCV---NTRTFEENRYLVMATRAGIVKKTSLDAY 665

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +  + G IA+ L   D ++     + + DILL+T  G  +RF  +  R   GRN+ GVR
Sbjct: 666 KRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAM-GRNTSGVR 724

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GN 784
           GI L K D+VI M +     AD    +  M      +R   G  E    +++    E G 
Sbjct: 725 GIKLRKDDEVIGMVV-----ADPAMTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGEDGV 779

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +++E   E  L E+     +    G  +SS       +   G+   D+  I   G +V +
Sbjct: 780 VADEEIAE-ALPEETDTEEAAGEEGDESSSSSRSYRRQRRGGLGVRDIRVIPRNGKVVKI 838

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V + D +++V+  G + RV   EI    R T+GV +    + +RV S+ RI
Sbjct: 839 LAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGDRVASMARI 891


>gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 321/734 (43%), Positives = 451/734 (61%), Gaps = 39/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + KCA
Sbjct: 29  VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 88

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG+YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE ++
Sbjct: 89  RVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 149 APLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 208

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    + NP    + L+E     ++GPDFPTGA ILG  GI++AY TGRGS+ +R
Sbjct: 209 REVADGVQWYLANPGASREELLEELLLRVKGPDFPTGATILGHKGIEDAYRTGRGSVTMR 268

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V ++E+  G R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE S R G R+
Sbjct: 269 AVVNVEELQG-RTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQRL 327

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQS FS NM+A+    P   +L   ++ +V  + +V+ 
Sbjct: 328 VIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLSLDAFIRHWVTHQMDVIA 387

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  LM+          L
Sbjct: 388 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLME----------L 437

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D                + E+Q RAIL+++L RL  L R  I++    L   I E  +I
Sbjct: 438 LD----------------IDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNEI 481

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L S  R   II  EL  + D+    RRTRI+ G   DM  ED I  E+MVVT++  GYVK
Sbjct: 482 LGSEQRQREIISTELGEIVDKHGDDRRTRILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L   
Sbjct: 542 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEA 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+++    E I  ++   + + +    Y+V ATK G V++ +L D+    
Sbjct: 602 GRDAKGQHVANLMAFQPDEHIAQVLDLKDYQQA---PYLVLATKRGLVKKTRLEDYDTNR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
            +G IA+ L   DE++S +  ++ +D+LL ++ GQ +RF  +  A+R   GR + GV G+
Sbjct: 659 SAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTATEDALRPM-GRATSGVTGM 717

Query: 728 SLAKGDQVISMAIV 741
              + D++++  +V
Sbjct: 718 KFREDDELLAANVV 731



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 31/280 (11%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK-------IAMKLDSR-DEILSVETCTQENDILL 698
           +++F T  G V R K  + ++  R  K       +A + D    ++L ++   Q   ++L
Sbjct: 580 WLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLMAFQPDEHIAQVLDLKDYQQAPYLVL 639

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-----ADYDERIC 753
            TK G   +   + +  +    S GV  I+L  GD+++S  +V   D     +   + I 
Sbjct: 640 ATKRGLVKK---TRLEDYDTNRSAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIR 696

Query: 754 YMKHMSAQRRLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           +     A R +    T  +T +K   +D  +  N+  +          F+  V+E G+ K
Sbjct: 697 FTATEDALRPMGRA-TSGVTGMKFREDDELLAANVVTDGS--------FVFIVTEGGYAK 747

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           RT+  ++R+  R G GI+   +++  E G LV    V + D++++V + G ++R  V  +
Sbjct: 748 RTAVEEYRLQGRGGLGIKVAKLAE--ERGDLVGALIVQEEDEVLVVMEGGKVVRSSVAGV 805

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
               R T GV+     K++R++ V R  E  I  E ES E
Sbjct: 806 PAKGRDTMGVIFAKPDKNDRIIEVARNSERGIEGE-ESAE 844



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 16/144 (11%)

Query: 761 QRRLISGDTEEITSLKNDS-------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           QR +IS +  EI     D          +G++S E   +L  +E+ ++T++  G+ KRT 
Sbjct: 488 QREIISTELGEIVDKHGDDRRTRILMGFDGDMSME---DLIPEEEMVVTITRGGYVKRTR 544

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           S ++R   R GKGI+    +++     +   F    +  ++  ++ G + R    E+  A
Sbjct: 545 SDNYRSQQRGGKGIKG---AQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEA 601

Query: 874 SRATKG---VVIFSTAKDERVVSV 894
            R  KG     + +   DE +  V
Sbjct: 602 GRDAKGQHVANLMAFQPDEHIAQV 625


>gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 592

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 299/616 (48%), Positives = 419/616 (68%), Gaps = 27/616 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSL 624
               A+G  +IN+L +
Sbjct: 577 YGRTAKGIPIINLLGI 592


>gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 554

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 287/547 (52%), Positives = 385/547 (70%), Gaps = 9/547 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547

Query: 547 YVKRVPL 553
           YVK  PL
Sbjct: 548 YVKYQPL 554


>gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 823

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 339/883 (38%), Positives = 513/883 (58%), Gaps = 99/883 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +    + DE+  SYL+Y+++VI+GRAIPD+RDGLKPV RRI++ M ++G+  NK +
Sbjct: 17  EQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPF 76

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQ W +R  L+EGQGNFGS+D DPPAA RYT
Sbjct: 77  KKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYT 136

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +++D+ K TV    N+DGS QEP VL A+ PN+L+NG  GIAVGMATNIP
Sbjct: 137 EARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIP 196

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL +VVD  +A I N DI ++ L++II+GPDFPTG +I+G++GI+  Y TG+G   IR
Sbjct: 197 THNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMYITGKGGFTIR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + I K    ++ I++TEIPY ++KA ++++IA+ ++E+ I  + DLRDESD+ G RVV
Sbjct: 257 GKAEI-KHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEI-PVKDLRDESDKDGLRVV 314

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVV 370
           IE       +VILN LY+ T+LQ+ F+ N + ++G K P    L  +++A+V  R EVV 
Sbjct: 315 IEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEVVR 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y   +   RAH++ GL  A   +D VV IIR S +   A             +  L
Sbjct: 375 KRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEA-------------LSQL 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D++              +SE Q +A+L++RL RLT L   +++ E   L + +++  ++
Sbjct: 422 VDILQ-------------MSEEQAKAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKEL 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGY 547
           L +  ++  +I +EL  +K +   PR+T I    E     + +D I  +D+V+T++  G+
Sbjct: 469 LMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGF 528

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K + +  +R QRR GKG  G  + ++D ++ +     H+  LFF+SLG VY+ +   + 
Sbjct: 529 LKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIE 588

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---VFATKHGNVRRNKLSD 664
             +   +GK +   + L  GER+  ++   +        YV    F TK G V+R  L D
Sbjct: 589 ESNRGTKGKPINKYIKLENGERVLAMVDITD--------YVGELFFVTKKGVVKRTSLED 640

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           F  I   G  A+     DE++SV     E N +L++TKLG  +RF I  +R   GRN+ G
Sbjct: 641 FKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTM-GRNAAG 699

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L +GD+VIS                                   T L+ND+    
Sbjct: 700 VRGIRLREGDEVISS----------------------------------TVLENDNG--- 722

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          +ILT++E G+GK T   D+R  +R G GI+  ++ +I + G +V 
Sbjct: 723 ---------------YILTITENGYGKLTEVSDYRKQSRDGLGIK--NIGEIEKTGPIVG 765

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           V  VN +++I+L +  G  I+  V++I   SR  +GV + + A
Sbjct: 766 VAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLA 808



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           V+  G VKR  L  ++      KG   +  +D D  V+ L I S   +VL  + LG   +
Sbjct: 627 VTKKGVVKRTSLEDFK--NITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIR 684

Query: 601 ---EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
              E+V  +   +   RG      + L +G+ + +      D     N Y++  T++G  
Sbjct: 685 FGIEEVRTMGRNAAGVRG------IRLREGDEVISSTVLEND-----NGYILTITENGYG 733

Query: 658 RRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +  ++SD+ + +R G   K   +++    I+ V     + +I+L TK G  ++F +S I 
Sbjct: 734 KLTEVSDYRKQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIP 793

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIV 741
             + R + GV+ ++LA GD V   A++
Sbjct: 794 TRS-RTAQGVKVMNLADGDIVADFAVI 819


>gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 827

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 338/892 (37%), Positives = 514/892 (57%), Gaps = 97/892 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+NSY+ YA++VI+ RAIPD+RDGLKPV RR+L+ +  +GV  +KK  KCA
Sbjct: 9   VQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPDKKTKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MGKYHPHG+++IY AL  M Q WS+R +LI+ QGNFGS DGD PAA RYTE ++
Sbjct: 69  TIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L  + KDTVDF PN+   ++EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 129 SRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMATNIPPHNL 188

Query: 196 GEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV+D    +I    +  + +LD +++ I+GPDFPTGA+ILGR GI+ AY +GRG I +R
Sbjct: 189 REVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALILGRRGIEEAYRSGRGKIKMR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
            V  IE     + +I+V E+PY V ++ ++EK+AELV++K+I  I  + D + +    ++
Sbjct: 249 AVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAGKGSSAKI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL++ A+ +VILNQLY++T LQ  F V M+ +   +P    L  +L  F+  +  VV 
Sbjct: 309 NIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGEPRILNLQEMLNEFLKHQINVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNK  +RAH+L GL  A+ ++DE+VRIIR +   E A+++L+ R          
Sbjct: 369 RRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIAR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q +AI+++RL  LTGL R  +++E   L   I    +I
Sbjct: 419 ----------------FAFSDAQAQAIVDMRLRALTGLERGRLQSEYEELLRRIARYREI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           LS +  LL +I++EL  +K++    RRT+      D  ++DED I  +D+V++ + LGY+
Sbjct: 463 LSDQRELLSVIREELTQLKEKFGEKRRTQFA---FDDALDDEDLIPDDDIVISSTRLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +R Q RGGKG  G+   D D + DLF+ + H  ++ F++ G  ++ K + +P 
Sbjct: 520 KRMSPENFRQQNRGGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKGYEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  +RG AL+N+L L   ER+        D SS    Y+V ATK G V++  LS +  +
Sbjct: 580 ASRTSRGTALVNLLKLQPEERVNACFSL-RDLSSEQ--YLVLATKSGLVKKTPLSQYANV 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IAM +   D+++  +      +I+L TK G  +RF    IR   GR+++GVRGI 
Sbjct: 637 RKNGLIAMNIREDDQLIEAKLVDPGEEIMLVTKKGMAIRFREEDIRS-TGRSAMGVRGI- 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
                                             RL SGD  E+  ++  S         
Sbjct: 695 ----------------------------------RLDSGD--ELIGMQKLS--------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSEKG+GK T++ +F+  NR GKG+    +++  + G LV     +
Sbjct: 710 -------QGGYLLLVSEKGYGKLTATEEFKPQNRGGKGLHCYRITE--KTGDLVGFKLCD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIR 898
            + +I+L++ +G LIR+ + ++ +  R T GV      K  D  + S+ ++R
Sbjct: 761 QDREIMLITSEGILIRMSLEKVSVIGRNTSGVKFMDLPKNGDTVIASIAKVR 812


>gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
 gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
          Length = 871

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 338/899 (37%), Positives = 507/899 (56%), Gaps = 95/899 (10%)

Query: 10  EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           EE+E G +    +  E++ SYL YA++VI+GRA+PD RDGLKPV RR+L+GM+ +G+  N
Sbjct: 2   EEQEMGRVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K AR+ GEVMGKYHPHG+A+IYD + R+AQ W+LR  L++GQGNFGSVDGD  AA 
Sbjct: 62  QAYKKSARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R  +    +L D+ +DTVD+ PN+D S +EP+ L +  PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARFAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNLGEV+D    +ID+P+ +L  LM  + GPDFPTG +I+GR GI +AY TGRG I
Sbjct: 182 NMPPHNLGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++RG   +E+    R  +V+TEIPY VNK  ++E IA+ V+E  I  ++DLRDESDRQG 
Sbjct: 242 IVRGRCVVEEGK-RRTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGL 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V++L R    +++  QLY  T +QS F V  + L   +P    L  +L+ F+ +R +V
Sbjct: 301 RIVLDLNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KA++R H++ GL  A+  +DEV+RIIR +   E A   L ++        
Sbjct: 361 VRRRTAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  SE Q +AIL++RL RLTGL RD +  E+  L  +I    
Sbjct: 413 ------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIARYQ 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLG 546
           +IL+    L G+I+ EL  ++ +    RRT I   +    D  ED +  E++V+T+S  G
Sbjct: 455 EILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLSKDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y++R  L  Y  Q RGGKGR G  + +ED V  + + +TH  VL F+S G V+  K   +
Sbjct: 515 YLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMV 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMP-FPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P  +   +G+ +   +SL++GE +  I+  FP++ S+     VV  T+ G  +R   S+ 
Sbjct: 575 P-ETKSGKGRKVEQFISLSEGETVVEILGRFPDNCST-----VVLITRRGIAKRMDKSEL 628

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + R+G+  M LD  D+I  +      +D+ L + +G+ +R     IR   GR++ GV+
Sbjct: 629 QNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTM-GRSARGVK 687

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L K D++IS  +                        I+GD+                
Sbjct: 688 AMKLGKDDEIISCEV------------------------IAGDSR--------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAV 844
                         IL VS++G GK TS  +F + +R+  G RA  +  +   +     V
Sbjct: 709 --------------ILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVANTV 754

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           FP   +D++ L++  G +IR+ V+ I    R   G ++      + V +V  I + ++V
Sbjct: 755 FP---DDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDLV 810


>gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
 gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
          Length = 856

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/715 (43%), Positives = 445/715 (62%), Gaps = 20/715 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I  EM+ SY+ YA++VI GRA+PD RDGLKPVHRRIL+ M Q G+     + K +
Sbjct: 19  VETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARSAHRKSS 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MG YHPHG++AIY+ALARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R+
Sbjct: 79  SIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMRYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LLD++  DTV+F  NYD    EP VL A +PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 139 SPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTNIPPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +I +P+  ++ LM  ++GPDFPTGA I+G+  I  AY TGRG + +R    
Sbjct: 199 GEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIVGQNAIYKAYKTGRGRVRVRAEFD 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           ++      ++IV+TE+P+Q NKA ++E+IA+ V    I  I DLRDESDR G RVV+ELK
Sbjct: 259 VQD-----DRIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGIRVVVELK 313

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ D++ NQL  +  L+S F V  +AL   +P+  TL   L  ++  R  VV RR++Y
Sbjct: 314 RGANPDIVKNQLLEH-HLESTFGVINLALVDGQPQVLTLKETLHEYLEHRRTVVRRRSQY 372

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L++ RDRAH+L G   A+  +D+VV IIR S + + A+  L       SD +       
Sbjct: 373 ELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESDERG------ 426

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                  S  T   SE Q   I+ ++L  LT L  D+I +E  S+   I+    IL++  
Sbjct: 427 ------ESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNPD 480

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +++ EL +++D+    RRTRI+E    +  ED I +ED+VV V+   Y+KR+ L  
Sbjct: 481 ELDAVVEDELATIRDKYADERRTRIIEDDGTVTHEDLIAQEDVVVVVTEDDYIKRMSLED 540

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R+Q RGGKG  G  ++D D V+ +++ +TH  +L+F+S G VY+ K +++P  S  ARG
Sbjct: 541 FRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPEMSRTARG 600

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           K+ +N+L L+ GE+IT ++   E D       Y    T+ G ++R  ++ F  I  +G I
Sbjct: 601 KSAVNLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGYIKRTSVNSFQNIRSTGII 660

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           A+ L + D+++ VE      DI+L T+ G  +RF    +R   GR++ GV GI L
Sbjct: 661 AISLGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSV-GRSARGVHGIKL 714


>gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 883

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 315/745 (42%), Positives = 462/745 (62%), Gaps = 28/745 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DE+++SYLTYA +VI+ RA+PD+RDGLKP  RRIL  M  +G+       KCA
Sbjct: 23  INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE M +YHPHG+A+IYD+L RMAQDW+LR  L+ GQGNFGS+ G PPAA RYTE RL
Sbjct: 83  GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL+DL +DTVDF  NYDG ++EP+VL  ++PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV    V ++DNP   L  L++II GPDFPTG +I+GR G+  AYA G G I +R  + 
Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMGRQGLLEAYARGAGKITLRARAQ 262

Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG--YRVV 311
           + E+  G    I+++E+P+QV + A++E+IA LV+E+RI D++ +RDES  R G   R++
Sbjct: 263 VMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLI 322

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KRG    ++LNQLY+YT LQ   S+ M+AL   +P   TL  +L+ F+  R  V+ R
Sbjct: 323 VEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRPRELTLKEMLQKFLDHRVHVIRR 382

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE---------LMQRSW 422
           RT++LL +A+ R HVL G  IA+A++++V++I R SPN   A+           LMQR+ 
Sbjct: 383 RTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQRAI 442

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  L          +G+     ++E Q  A++ LRL +L  L  ++I  E   L  
Sbjct: 443 GEGAFAAL-------QRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRE 495

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+    +LS  + +  +I+++L  +  +    R+T + +   D++ ED IV E  VVT+
Sbjct: 496 LIRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDVDMEDLIVDEPNVVTI 555

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH G+VKR+ L+ YR Q R G       +RD DFV   F+ ST   +L F++ G +Y  K
Sbjct: 556 SHEGFVKRMALTEYRVQGR-GGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLK 614

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+R+P     + G+A+ N+LSL +GE+I++I+P  E        +++ AT+ G V++  L
Sbjct: 615 VYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVRE---FVEGAHLLMATRQGTVKKTDL 671

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +  + + G I + LD  DE+++V      ++++L+T+ G  +RF  SAIR   GR + 
Sbjct: 672 MAYSNVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPM-GRTAR 730

Query: 723 GVRGISLAKGDQVISMAIVLHADAD 747
           GVRGI L K D ++ M +   AD D
Sbjct: 731 GVRGIKLGKDDALVGMVV---ADPD 752


>gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine
           microorganism HF4000_APKG8D23]
          Length = 898

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 345/915 (37%), Positives = 506/915 (55%), Gaps = 88/915 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I+DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+GM Q G   +K Y K AR  GE
Sbjct: 10  ISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGYSKSARSVGE 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+ A+YD + RMAQD+SLR  LI+GQGNFGS+DGDPPAA RYTE RL + + 
Sbjct: 70  VMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYTESRLDRLSQ 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +LDD+ KDT+D  PN+D +  EP VL AR PN+L+NG  GIAVGMAT IP HNL EV  
Sbjct: 130 HMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIPPHNLNEVAA 189

Query: 201 GC-------------VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
                          + + + P ID    ME ++GPDFPTGA I G  GI + Y TG G 
Sbjct: 190 AIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGILDMYRTGNGR 249

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IR    +++ S  + ++VV  IPYQV KA ML+ IAELVR+  I  I D+RDES ++G
Sbjct: 250 FQIRSDVEVQEDSRGK-RLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIRDIRDESSKEG 308

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIE+K+ A    +LNQLY+ + LQ  +S NM+ +   +P +  L  IL  +V  RE 
Sbjct: 309 IRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTILHTYVRHRES 368

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++  +KA  RAH+L GL  A   + E++ + R S +     R+  ++     + 
Sbjct: 369 VVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDS-----RDQFEQYLRGDEK 423

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              I   D              S+ Q +AI E RL +LT L   ++ +EL  L   IK+ 
Sbjct: 424 YPKIRRFD-------------FSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDY 470

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL SR R L II  EL  V D     RR+RI    L M+ ED +  + +V++++   Y
Sbjct: 471 QNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDREDLVAEQAIVISLTRDNY 530

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++ +P+  +R Q RGGKG  GVV ++ED  + +    +   +L F+ +G VY  + W  P
Sbjct: 531 IRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWETP 590

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDF 665
             S   RG  + N+L+ +   E++ +I+P       +    Y++FAT +G +++++LS++
Sbjct: 591 SASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEY 650

Query: 666 IQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708
           ++INR+GK A++      D ++SV   T  + ++L +  G   RF               
Sbjct: 651 VKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSRVDSNSGE 710

Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH--MSAQRRL 764
                 +RV  GR S GV G+ L KGDQVI M +      D+D  +  +    M+ + RL
Sbjct: 711 TITTHVVRV-QGRVSQGVSGMKLRKGDQVIGMIVT----DDFDTSVLTISRYGMAKRSRL 765

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            SG+ + +  L +DS                     + V ++  G       +R +NR  
Sbjct: 766 GSGEMKPV--LDDDS---------------------MPVLDEDGGLVQQRDGYRRTNRGT 802

Query: 825 KGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVI 882
           +G+R   +   + I   V+V  V D +DQ+ +++  G +IR+   + +    + TKG  I
Sbjct: 803 RGVRTMSLRDGDHI---VSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTKGTRI 859

Query: 883 FSTAKDERVVSVERI 897
                 +R   V+ I
Sbjct: 860 MELRNADRTGYVDEI 874


>gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/630 (45%), Positives = 415/630 (65%), Gaps = 28/630 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +  
Sbjct: 7   KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RY
Sbjct: 67  TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN+
Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++
Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G R
Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +VV
Sbjct: 307 VVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S +P+TA+  LM+R         
Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                       G D      +VQ +AI++++L RLT L  +D+R EL  L + I    D
Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY+
Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +  
Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE 638
            S  +RG  + ++LS++  E IT ++   E
Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 752 ICYMKHMSAQRR----LISGDTEEITSLKNDSS----VEGNISEERCQELKLKEQFILTV 803
           I ++K + A       LI  +T EI     D      V   + E   ++L  KE+ ++ +
Sbjct: 455 IAHLKDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILI 514

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S  G+ KR  +  ++  NR GKG  + +++   E   L  +F  + +D I+ +++ G   
Sbjct: 515 SHLGYIKRIPATAYKSQNRGGKGSNSVNLA---EDDFLDQIFTASTHDYIMFITNAGKAY 571

Query: 864 RVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
            + V+EI+ ASR ++G  I    S + DE + +V  ++E
Sbjct: 572 WLKVHEIQEASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610


>gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271]
 gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271]
          Length = 717

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 317/748 (42%), Positives = 457/748 (61%), Gaps = 70/748 (9%)

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           +  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFP
Sbjct: 1   MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           T A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVNKA ++EKIA
Sbjct: 61  TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIA 120

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           ELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+
Sbjct: 121 ELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH 180

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN+D ++ +IR
Sbjct: 181 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 240

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAI 457
            +P P  A+  L+   W   ++  +++   D +          G  DG  YL+E Q +AI
Sbjct: 241 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 300

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V+++    RR
Sbjct: 301 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 360

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+
Sbjct: 361 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 420

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L + +TH  +L FSS G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  
Sbjct: 421 DRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT 480

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
           E E     + V  AT +G V++  L++F ++  +GK+A+KL   DE++ V+  + E++++
Sbjct: 481 EFEEG---VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 537

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+ VRF  S++R   G N+ GVRGI L +GD+V+S+ +                 
Sbjct: 538 LFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVP---------------- 580

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                    GD   +T+ +N                             G+GKRT+  ++
Sbjct: 581 --------RGDGAILTATQN-----------------------------GYGKRTAVAEY 603

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I  R T
Sbjct: 604 PTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 661

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDE 905
           +GV++  TA+DE VV ++R+  +E VDE
Sbjct: 662 QGVILIRTAEDENVVGLQRV--AEPVDE 687


>gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 858

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 311/743 (41%), Positives = 447/743 (60%), Gaps = 41/743 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M   G   N 
Sbjct: 22  EVEASRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNG 81

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNFGS     PAA+R
Sbjct: 82  GFSKCARVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQR 141

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 142 YTECKMAPLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 201

Query: 190 IPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL E+ D  +  ++NP+      L+A M+ I+GPDFPTGA ILGR GI++ Y TGR
Sbjct: 202 IPPHNLREIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 261

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSIV R V ++E+  G R  +V TE+PYQVN   +L KIA+L ++ ++  IAD+RDE SD
Sbjct: 262 GSIVQRAVVNVEELHG-RTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 320

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   +L G +  +V  
Sbjct: 321 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 380

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +  V+ RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 381 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLM------ 434

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               DL+                 + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 435 ----DLLS----------------VDEVQADAILALQLRRLAALERQKILDEHAELEAKV 474

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+  EL  + ++    R+T IV    +M  ED I  EDMVVT++ 
Sbjct: 475 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 534

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR  +  YR+QRRGGKG  G  +R++D V   F  S+H  +LFF++ G VY+ K +
Sbjct: 535 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 594

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V ATK G V++  L+D
Sbjct: 595 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHI---SSFEDKEYLVLATKRGFVKKTHLTD 651

Query: 665 FIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718
           +      G IA+KL        D+++S        D++L ++ GQ +RF  S  ++   G
Sbjct: 652 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMG 711

Query: 719 RNSVGVRGISLAKGDQVISMAIV 741
           R++ GV G+     D++++M +V
Sbjct: 712 RSTSGVTGMRFRDDDELLTMDVV 734



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 9/147 (6%)

Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           QR ++S +  EI +   D   +++     E   ++L  +E  ++T++  GF KRT    +
Sbjct: 487 QRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITRGGFAKRTRVDAY 546

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R   R GKG++   + + +++      F  + +D I+  ++ G + R    EI    R +
Sbjct: 547 RSQRRGGKGVKGAQLREDDQVEHF---FTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDS 603

Query: 878 KG---VVIFSTAKDERVVSVERIRESE 901
           KG     + +   +ER+  V  I   E
Sbjct: 604 KGQHVANLLAFQPEERIAQVLHISSFE 630


>gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 816

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 358/887 (40%), Positives = 507/887 (57%), Gaps = 94/887 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + +EM+ S+L Y+++VI+ RA+PD RDGLKPVHRRIL+ M   G   ++ +VKCA++ 
Sbjct: 15  IELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKCAKVV 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP-PAAERYTECRLQK 137
           G+VM ++HPHG+AAIYDAL RMAQD+SL   LI+G GNFGS D    PAA RYTECRL  
Sbjct: 75  GDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTECRLAP 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL  + +DTVDF PNYD    EP VL AR+PN+LVNG  GIAVGMAT IP+HNLGE
Sbjct: 135 IALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD    +ID+P+  +D LM  + GPDFPTG +ILGR GI++AY TGRGS+ +R V+ IE
Sbjct: 195 VVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRTGRGSVKLRAVATIE 254

Query: 258 KT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +  SG   QIVVTEIP+Q +   + +KI  LV EK +  I D+++ S     R VIELKR
Sbjct: 255 EARSG--YQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFSAGSETRFVIELKR 312

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A+ +V+LN LYR T LQ+ F + M+AL    P    L+G+ + +V  + EV+ RR+++ 
Sbjct: 313 DANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVDHQREVIRRRSEFR 372

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H++ GL   +  LD V+  IR S +   AR  LM   +              
Sbjct: 373 LGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFG------------- 419

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        SE+Q   IL++ L RLT LGR+++  E  +L   I E   IL+   R
Sbjct: 420 ------------FSELQANHILDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQR 467

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  ++K E+L+   E    RRTR      D   ED I  E +VV +S  GY+K VP S +
Sbjct: 468 LSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLISRSGYIKAVPESSF 527

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G  G  ++DED +  +   S  + +L FSS G VY+ + + LP     ARG 
Sbjct: 528 KAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGT 587

Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           AL+N++ L   ERIT++M    FPED        +VF T++G V+R  ++++ +  R G 
Sbjct: 588 ALVNLVPLADDERITSVMGTKDFPEDAD------LVFFTRNGMVKRTAMAEYARSRRDGI 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ +   DE++SV   T+E+D ++ TK GQ +RFP++ +R   GR + GVR I  A GD
Sbjct: 642 IAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVR-RTGRATAGVRSIRRADGD 700

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +++                                             G + E+  +  
Sbjct: 701 WIVA---------------------------------------------GGLIEDGVE-- 713

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+ +G+GKRT    F + +R G GIR   +++    G LVA   V   D++
Sbjct: 714 ------VLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERK--GELVAAAFVRPEDEV 765

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++VS +G +IRV + +I    R   GV + S   +E V SV  + ES
Sbjct: 766 LIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPES 812



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 33/214 (15%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           G VKR  ++ Y   RR G     + +R D++ V+ +     H  V+F        + +V 
Sbjct: 623 GMVKRTAMAEYARSRRDGI--IAIDVRGDDELVSVVVATEEHDGVVF------TKRGQVL 674

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW--------NNLYVVFATKHGN 656
           R P+   +  G+A   + S+ + +              W        + + V+  T  G 
Sbjct: 675 RFPLAEVRRTGRATAGVRSIRRAD------------GDWIVAGGLIEDGVEVLLVTSRGY 722

Query: 657 VRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L  F   +R G     +   + + E+++      E+++L+ +  GQ +R  I  I
Sbjct: 723 GKRTPLDSFPVHHRGGAGIRGIGLTERKGELVAAAFVRPEDEVLIVSSQGQMIRVRIGDI 782

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               GR + GV+ ISL   + V S+ +V  +  D
Sbjct: 783 S-NQGRYATGVKLISLQAEESVASVGVVPESGTD 815


>gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 283/630 (44%), Positives = 414/630 (65%), Gaps = 28/630 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +  
Sbjct: 7   KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RY
Sbjct: 67  TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDPPAAYRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN+
Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++
Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G R
Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +VV
Sbjct: 307 IVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S + +TA+  LM+R         
Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMER--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                       G D      +VQ +AI++++L RLT L  +D+R EL  L + I    D
Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY+
Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +  
Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE 638
            S  +RG  + ++LS++  E IT ++   E
Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 752 ICYMKHMSAQRR----LISGDTEEITSLKNDSS----VEGNISEERCQELKLKEQFILTV 803
           I ++K + A       LI  +T EI     D      V   + E   ++L  KE+ ++ +
Sbjct: 455 IAHLKDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILI 514

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S  G+ KR  +  ++  NR GKG  + +++   E   L  +F  + +D I+ +++ G   
Sbjct: 515 SHLGYIKRIPATAYKSQNRGGKGSNSVNLA---EDDFLDQIFTASTHDYIMFITNAGKAY 571

Query: 864 RVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899
            + V+EI+ ASR ++G  I    S + DE + +V  ++E
Sbjct: 572 WLKVHEIQEASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610


>gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
 gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
          Length = 836

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 322/884 (36%), Positives = 495/884 (55%), Gaps = 88/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T   + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM +G++ N+ Y K A
Sbjct: 11  VTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE MGKYHPHG++AIY+ + R+AQ+WS+R  L++GQGNFGS+DGD  AA RYTE R 
Sbjct: 71  RVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRYTEARF 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +    +L D+ +DTVD+ PN+D S +EP+ L +  PN+L+NG  GIAVGMATN+  HNL
Sbjct: 131 AETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD    +I  PD +LD LM  + GPDFPTG +I+GR GI +AY TGRG I++RG  H
Sbjct: 191 GEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGRGKIILRGKCH 250

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+ S  +  +V+TEIPY +NK  ++E I + V+ K+I  ++D+RDESDR+G R+V+EL 
Sbjct: 251 VEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVVELT 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+++  QLY  TSLQS F +  +AL   KP    L  +L+ F+ +R  VV RRT++
Sbjct: 311 READAELVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYRRSVVRRRTQF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  R H++ GL  A+  +D+V+ IIR +   + A+  L+                 
Sbjct: 371 RLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLI----------------- 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                    G +  +++Q +AIL++RL RLTGL R+ +  EL  L  +I+    IL + S
Sbjct: 414 ---------GELAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPS 464

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPL 553
            L G+I  EL  ++ +    RRT +   L    D  ED +  ED++VT+S  G+++R PL
Sbjct: 465 VLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPL 524

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y  Q RGGKGR G V++D+D V  + + STH+ +  F+S G V+  +   +P  +   
Sbjct: 525 ENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIP-ETKTG 583

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+A+   +SL   ER+  +    E+ ++    +++F TK G  +R    +   + R+G+
Sbjct: 584 KGRAVSKFVSLTDDERVVAMRGTLEETATS---HLLFITKRGIGKRMDAEELENLTRAGR 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + LD  DEI ++      + +LL T   +      S  R   GR + GV+ + LA  D
Sbjct: 641 RVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPM-GRAARGVKAMKLAPDD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++I+   V       DE +  +      +R                              
Sbjct: 700 RIIAAWTVAP-----DENLLLVSETGIGKR------------------------------ 724

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                             T   +F I +R   G++A  +      G L A   V  +D++
Sbjct: 725 ------------------TKPEEFPIHHRGSGGVQAMHLGA--RTGRLAAAVGVASSDEV 764

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            L+++KG +IR+  ++I + SR   G ++      + + SV  I
Sbjct: 765 GLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVI 808



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 56/256 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +V  +K G +RR+ L ++   NR GK  +   L   DE+  +   +  +DI L T  G  
Sbjct: 510 LVTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRG-- 567

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                   RVFA      +RG  + +       A+        DER+  M+         
Sbjct: 568 --------RVFA------IRGHMIPETKTGKGRAVSKFVSLTDDERVVAMR--------- 604

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            G  EE  +                         +L ++++G GKR  + +     R+G+
Sbjct: 605 -GTLEETAT-----------------------SHLLFITKRGIGKRMDAEELENLTRAGR 640

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + + D    +EI A++     + N +++LV+ K     V  +E R   RA +GV     
Sbjct: 641 RVLSLDDG--DEIAAIIDT---DGNSKVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKL 695

Query: 886 AKDERVVSVERIRESE 901
           A D+R+++   +   E
Sbjct: 696 APDDRIIAAWTVAPDE 711


>gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642]
 gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642]
          Length = 775

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 330/862 (38%), Positives = 488/862 (56%), Gaps = 104/862 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  N+ Y K ARI G+
Sbjct: 7   IAEEIKTSYLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVGD 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+AA+Y+AL RMAQD+++R  LI+GQGNFGS+DGD PAA RYTE RL K A 
Sbjct: 67  VLGKYHPHGDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIAE 126

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDTVDF PN+D + +EP VL A +PN+L NG  GIAVGMATNIP HNL E+ D
Sbjct: 127 EMLKDIDKDTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREICD 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             V  I NPD+ +  LM+ ++GPDFPTG +I+G  GI  AY TGRG I++RG    E  +
Sbjct: 187 AIVEYIRNPDVTVRELMKHVKGPDFPTGGIIVGVEGIIKAYETGRGRIILRGKVEFEDNA 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
                I++ E+PY V K+ ++EKIA LV+E ++ ++  +RDESDR+G RVV+ELK G   
Sbjct: 247 -----IIIREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKSGVDK 301

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++L +LY YT LQ  +S+ ++AL   +P+  TL  ++  +V  R EVV RRT Y L KA
Sbjct: 302 NLVLKKLYLYTPLQITYSIMLLALVNTQPKILTLKDLIAEYVNHRREVVRRRTAYELEKA 361

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +R HVL G  I ++NLDE + +IR S +P  A+ +L+ R                    
Sbjct: 362 EERIHVLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINR-------------------- 401

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LSE Q  A+L++RL +LT +  D I  E   L  +IKE   ILSS+ ++  I
Sbjct: 402 ------FSLSEKQADAVLQMRLQKLTSMEIDGILKEYEELDKKIKELKSILSSQEKMDEI 455

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I +EL  +K      RRT+IVE   ++ + D I  E+ V+ ++  GY KR+  S +R QR
Sbjct: 456 IIKELEEIKKNYGDDRRTKIVEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRVQR 515

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG G SG+ +RD D+   +  V +   +L F+  G  +    + +P      +G +L  
Sbjct: 516 RGGVGTSGISLRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKR 575

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            L +   + I  I+PF +         VV  T+ G +++  +++F    RSG +A    S
Sbjct: 576 FLRIE--DEIVGIVPFGKGS-------VVILTESGYIKKVNIAEFENAKRSGILA----S 622

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            + +  V+    + ++++ T+ G+ VRF    +  +  RN+ GV+ +SL           
Sbjct: 623 PESVAFVKKLDGK-EVIIATENGRLVRFKAEEVPEYK-RNARGVKAVSL----------- 669

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
               D D   +I +M   S                                     E  I
Sbjct: 670 ----DGD---KIAWMDVGS-------------------------------------EDLI 685

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT++E G+GK T + +FR++ R  KG+ A    K+NE    +       +D+++++S  G
Sbjct: 686 LTLTENGYGKMTKTEEFRLTGRGAKGVTA---HKVNEKTGKLVFAEFVKSDKLMVISKDG 742

Query: 861 TLIRVPVNEIRIASRATKGVVI 882
            +I V   +I +  R   GV +
Sbjct: 743 NVIVVETKQIPVMGRNAVGVAV 764



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 28/219 (12%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           ++  +EI  V+T   E ++L+ TK G   R   S  RV   R  VG  GISL  GD    
Sbjct: 476 VEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRV-QRRGGVGTSGISLRDGDYAAY 534

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG-------NISEERC 790
           +  V   D     RI      +   +  S +  EI   K + S +G        I +E  
Sbjct: 535 IVKVRSLD-----RILL---FTKDGKAFSINAYEIP--KQERSGKGVSLKRFLRIEDEIV 584

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             +   +  ++ ++E G+ K+ +  +F  + RS  GI A+  S        VA     D 
Sbjct: 585 GIVPFGKGSVVILTESGYIKKVNIAEFENAKRS--GILASPES--------VAFVKKLDG 634

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++I+ ++ G L+R    E+    R  +GV   S   D+
Sbjct: 635 KEVIIATENGRLVRFKAEEVPEYKRNARGVKAVSLDGDK 673


>gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
 gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
          Length = 857

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 312/743 (41%), Positives = 444/743 (59%), Gaps = 41/743 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   N 
Sbjct: 21  EAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 80

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KC R+ G+V+G +HPHG+A++YDALAR+ Q WS+R  L+ GQGNFGS     PAA R
Sbjct: 81  GFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 141 YTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV D     +++P+      L+A M+ I+GPDFPTGA ILGR GI++ Y TGR
Sbjct: 201 IPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 260

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSIV R V ++E+  G R  +V TE+PYQVN   +L KIA+L ++ ++  IAD+RDE SD
Sbjct: 261 GSIVQRAVVNVEELHG-RTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 319

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   +L G +  +V  
Sbjct: 320 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 379

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +  V+ RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 380 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLM------ 433

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               DL+                 + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 434 ----DLLS----------------VDEVQADAILALQLRRLAALERQKILDEHAELEAKV 473

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+  EL  + ++    R+T IV    +M  ED I  EDMVVT++ 
Sbjct: 474 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 533

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR  +  YR+QRRGGKG  G  +R++D V   F  S+H  +LFF++ G VY+ K +
Sbjct: 534 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 593

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V ATK G V++  L+D
Sbjct: 594 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHI---SSFEDKEYLVLATKRGFVKKTHLTD 650

Query: 665 FIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718
           +      G IA+KL        D+++S        D++L ++ GQ +RF  S  ++   G
Sbjct: 651 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMG 710

Query: 719 RNSVGVRGISLAKGDQVISMAIV 741
           R++ GV G+     D++++M +V
Sbjct: 711 RSTSGVTGMRFRDDDELLTMDVV 733



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 9/147 (6%)

Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           QR ++S +  EI +   D   +++     E   ++L  +E  ++T++  GF KRT    +
Sbjct: 486 QRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITRGGFAKRTRVDAY 545

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R   R GKG++   + + +++      F  + +D I+  ++ G + R    EI    R +
Sbjct: 546 RSQRRGGKGVKGAQLREDDQVEHF---FTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDS 602

Query: 878 KG---VVIFSTAKDERVVSVERIRESE 901
           KG     + +   +ER+  V  I   E
Sbjct: 603 KGQHVANLLAFQPEERIAQVLHISSFE 629


>gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii]
 gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii]
          Length = 877

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 315/892 (35%), Positives = 498/892 (55%), Gaps = 87/892 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +  +  EM  SY+ YA++VI GRA+PD+RDG+KPVHRRILF M ++G+  +  + KCA
Sbjct: 59  IITTDLNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAMNELGLNPDTPFRKCA 118

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R +LI G GNFGS+D DPPAA RYTEC++
Sbjct: 119 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSIDHDPPAAMRYTECKI 178

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K +   LL D+GK T D+  N+DGS  EP VL +  P +L+NG  GIAVGMATNIP HN
Sbjct: 179 SKLSKEILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGSSGIAVGMATNIPPHN 238

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++     +I+ P +    L+++I  PDFPTG  ILG  G    Y  G+GSI++RG +
Sbjct: 239 LTEILRAVDGLIEEPQMSEKKLLKLIPAPDFPTGGSILGLQGCSKLYKNGQGSIIVRGKT 298

Query: 255 HIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           H E        +R  I++TE+P+Q+NKA+++ KIAELV EK +  I DLRDESDR G R+
Sbjct: 299 HFETILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDGIVDLRDESDRNGIRI 358

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+  + +VILN L++ T LQ+ F  +++AL G +P   +L  +L  F+ FR++ + 
Sbjct: 359 VIELKKDTNKEVILNNLFKKTPLQTSFGGHILALVGQQPATLSLKELLLLFIQFRKKTIR 418

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ LN + ++ H++ GL + + +++ +++++R S N   A+  LM+           
Sbjct: 419 RRLQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKIILMESG--------- 469

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q+ AIL ++L RLT L  + + NE   L   IK     
Sbjct: 470 ------------------LTQNQSDAILNIQLRRLTRLESNKLNNEYEILNNTIKNLKKP 511

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    L   IK++L  +      PRRT +V  E    +++ + I     +V V+   ++
Sbjct: 512 LALPEELSKNIKKDLFEISILFGMPRRTNVVHSETSGSIDEMEMIDNHATIVMVTKF-FI 570

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +  Q RG +G+ GV+++++D ++  F  + H ++L  S  G  +  + +++PI
Sbjct: 571 KRMVVETFEPQTRGTRGKKGVMIQEDDEISHFFSCNNHDTILCISQNGIAFAFRAYQIPI 630

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G AL  +L      +I++I+P     S     Y++  TK+G +++  L  F  I
Sbjct: 631 SRRTAKGVALSAVLPNITTGKISSIIPVSVFSSEK---YLILLTKNGMIKKTPLIAFKNI 687

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
              G   +K+   DE+  V  C+ E+ IL++TK G+ +RF  +  ++ A GRNS GV+ I
Sbjct: 688 TARGLTVLKVGEEDELCWVRKCSLEDSILISTKNGKALRFLTNEKQLRATGRNSKGVKSI 747

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           ++ K D +I M ++  +   + +  CY                                 
Sbjct: 748 TIEKNDTIIDMDVLSTSKTKHQD--CY--------------------------------- 772

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL +++ GFGK+ +  DFRI NR GKG+    + K +    L   F V
Sbjct: 773 ------------ILAITKNGFGKKINHSDFRIQNRGGKGVTVIKLQKKDNDELLSLRFCV 820

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +  +I++ +  GT++R  +  I I  +  +GV++    + + V  V  I E
Sbjct: 821 KE-QEILMSTKNGTILRQKIEAITIQKKNARGVIVQKLMEGDYVSKVSLISE 871


>gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595]
 gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 854

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 332/908 (36%), Positives = 512/908 (56%), Gaps = 100/908 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M   G   +  + K  
Sbjct: 13  IKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAMWDGGYRPDSSFSKSV 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+VMG +HPHG+AAIYD + R+ Q W++R  L+ GQGNFG+      AA RYTE R+
Sbjct: 73  KIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTAGDLGAAAPRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++ D+ ++TVDF PN+DGS QEP VL AR+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 133 AQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSEGIAVGMATRIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    +DNP+      LDAL+E ++GPDFPTGA ILG  GI++ Y TG GSI  R
Sbjct: 193 REVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTKGIESMYRTGNGSITQR 252

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
            +  +++ +G R+ +VVT++P+QVN   +L+K+ E +++ R+  IAD+RDES  R G R+
Sbjct: 253 AIVEVDEING-RQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGIADIRDESSGRAGQRI 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LK+ A A V+LN LY++T +Q+ F  NM+AL    P   +L G ++ +V  + EV+ 
Sbjct: 312 VIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVDGVPRTLSLDGFVRHWVNHQIEVIR 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L K  +R  +L GL  A+  LDEV+ +IR SP  + AR  LM+           
Sbjct: 372 RRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEAREGLMK----------- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             ++E+Q   IL ++L RL  L R  I +E +       +  DI
Sbjct: 421 --LLD-------------INEIQADHILAMQLRRLAALERQKILDERDEKLALRDDYQDI 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   R   I+  E+  +  +    RRT+I+    ++ DED I  +D+VVT++  G+VKR
Sbjct: 466 LAKPERQRTIVSDEVGDIVAKFGDDRRTKILPFDGEVSDEDLIPEDDVVVTITRSGFVKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +S YRAQ RGGKG  G  +RD+D V    + STH   LFF+++G VY+ K + LP G+
Sbjct: 526 TKVSEYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNMGRVYRIKGYELPEGA 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669
             A+G+ + N+L+    ERI +++       S++   Y+V AT+ G V++ +L+D+    
Sbjct: 586 RDAKGQHIANLLAFQPDERIASMVSI----RSYDQADYLVLATEDGLVKKTRLADYDSAR 641

Query: 670 RSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
             G IA+KL  R     D ++S        D+LL ++ GQ +RF    + +R   GR + 
Sbjct: 642 TGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTADDATLRPM-GRATS 700

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   +GD                +R+  M                           
Sbjct: 701 GVTGMKF-RGD----------------DRLLAM--------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            ++ +E  +        +  V+E G+ KRT    +R+  R+G GI+  +V  +   G LV
Sbjct: 717 -DVVDEGAE--------VFVVTEGGYAKRTDIEQYRVQGRAGLGIKVANV--VEARGDLV 765

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                +  D+++++ + G ++R  V+E+ +  R T+GV   +  K ++++S+    E + 
Sbjct: 766 GALITHPGDEVMVIMESGKVVRSAVDEVSLTGRNTQGVKFATPDKGDKIISIALNLEKQE 825

Query: 903 VDEAESTE 910
            DE  +T+
Sbjct: 826 DDEEVTTD 833


>gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 838

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 333/915 (36%), Positives = 506/915 (55%), Gaps = 121/915 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID+PD+  + L+E+I GPDFPTG  I+G  GIK AY TG+G I++RGV 
Sbjct: 193 LGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKEAYNTGKGGIILRGVV 252

Query: 255 HIE---KTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E    T G R +  I+VTE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDRQG R
Sbjct: 253 SLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRDESDRQGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+ + ++ QLY  T+LQ+ F   ++AL   +P + +L  +L+ F+ FRE+ +
Sbjct: 313 VVIELKRDANPEEVIGQLYHQTALQTTFGAILLALVEGQPRQLSLRQMLQEFLRFREDTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA +RA ++ GL  A+  +DEV+ I+R SP+  TA+  L Q+         
Sbjct: 373 NRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKMVLCQQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + L+E Q  AIL + L RLT L R +++ E + L  +I     
Sbjct: 424 -----------------LDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQITSLRR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-------------EDEDCIVR- 535
           +L  R  LL  +K++L ++K +    RRT+++ G + +             E E   +  
Sbjct: 467 LLEDRRELLKSLKKDLRTIKRKYGDTRRTKLIPGQIAVKADKVNNQPSSPGEKEKSKISQ 526

Query: 536 -----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  ++  +H GYV+R+     +A       ++  +M D DF+    I +TH  +L
Sbjct: 527 EEQPPEPAILEFTHRGYVRRLAPGSKKA-------KAETIMGDNDFLIQTEITNTHQDLL 579

Query: 591 FFSSLGFVYKEKVWRL-PIGSPQARGKALINILS-LNQG--ERITTIMPFPEDESSWNNL 646
             ++ G VY  KV  + PI     RG  LI +L+   QG  E I      PE + + +  
Sbjct: 580 ILNTSGKVYPAKVGDISPISPRSPRGIPLITLLTNTAQGNVEGILGRFTLPETKDTHD-- 637

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +V  TK G ++R  L +   +++ G   +K+   D++   +     ++++L +  G+C+
Sbjct: 638 -MVIVTKQGRIKRISLEELTNVSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRCL 696

Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RF I+  ++   GR ++G++   + K  Q+I                             
Sbjct: 697 RFAINDDQLPVMGRGAMGLQSFRILKSQQIIG---------------------------- 728

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                   C  +  +E  +L V+++G+ K+ SS   R  NR   
Sbjct: 729 ------------------------CVAIGQEENLLL-VTQEGYAKKISSSSLRAGNRGDL 763

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G +       N+   LVA+   N + ++ LV++K  +I+  +  I I  R  +G  I   
Sbjct: 764 GTQMLKFH--NKTDNLVAITRTNSSQEVALVTNKDRVIKTSIESIPILDRDARGENILPM 821

Query: 886 AKDERVVSVERIRES 900
            +DE + SV  + E+
Sbjct: 822 TRDEIITSVVLVLET 836


>gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 886

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 344/897 (38%), Positives = 506/897 (56%), Gaps = 96/897 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M   G   ++ + K A
Sbjct: 56  IEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFFKSA 115

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG++HPHG+++IYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE ++
Sbjct: 116 RVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTETKM 175

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+ NYDG   EP +L +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 176 APLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPPHNL 235

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G   ++ +PD + + L+E     I+GPDFPTGA +LG  GI  AY TGRGSI +R
Sbjct: 236 REVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSITMR 295

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R  +VVTE+PYQVN   +  KIAELV++ ++  +AD+RDE S R G R+
Sbjct: 296 AVVAVEEIQG-RVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSGRTGQRL 354

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + +V+V
Sbjct: 355 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQIDVIV 414

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN+A  RAH+L G   A+  LD+V+ +IR S   E AR  LM+           
Sbjct: 415 RRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK----------- 463

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             + E+Q  AILE++L RL  L R  I+++   L   I E   I
Sbjct: 464 --LLD-------------IDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYKHI 508

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L++ +    II  EL  + D+    RRT I+ G   DM  ED I  E+MVVTV+  GY+K
Sbjct: 509 LATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYIK 568

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  YR+Q RGGKG  G  +R +D V   F+ +TH  +LF +  G VY+ K + L   
Sbjct: 569 RTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEA 628

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L++   E I  ++   + + +    Y+V AT+ G +++  L+++    
Sbjct: 629 GRDAKGQHVANLLAMQPDEEIQQVLDIRDYQVAQ---YLVLATRDGLMKKTALTEYDTNR 685

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
             G IA+ L   D ++S     +++D+LL ++ G  +RF     A+R   GR++ GV+G+
Sbjct: 686 TGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGVKGM 744

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +    D ++S                                         +SV G    
Sbjct: 745 TFRGDDTLLS-----------------------------------------ASVVG---- 759

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846
                   ++ ++  V+E GF KRT++  +R+ NR G GI+   V+K+ +  G L     
Sbjct: 760 --------EQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIK---VAKLQDARGDLAGALI 808

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V + D+I++V   G ++R  V E+    R T GVV    A D+R++S+ +  E  +V
Sbjct: 809 VGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSERNLV 865


>gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 788

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 337/834 (40%), Positives = 478/834 (57%), Gaps = 94/834 (11%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA + GEV+  YHPHG++++YD L R+AQ W +R  LI+ QGNFGSVDGD  AA RYTEC
Sbjct: 1   CAGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTEC 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+  A  LL D+ +DTVDF PNY+ S  EP VL +  PN+L+NG  GIAVGM TNIP H
Sbjct: 61  RLRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPH 120

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++   VAV+DNP   LD L +II+GPDFPTG VI GR GI +   TGRG + +RG 
Sbjct: 121 NLHELITASVAVLDNPATTLDELCQIIKGPDFPTGGVIAGRDGIDSYLRTGRGIVRMRGR 180

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E+T    EQI++TEIPY VN+A ++ +IAELV EK+I  I D+RDESD +  R+VIE
Sbjct: 181 AITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESD-ENTRIVIE 239

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG  +  ILNQLY+ T+L+S F V ++AL+  +P++  +  +L  ++  R +V+ RRT
Sbjct: 240 LKRGEQSSPILNQLYQKTALESSFGVILLALDKRRPKQMNIRELLDCYIDHRRDVITRRT 299

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +A DRAH+L G  IA+ NLD+ VRIIR S + + A+ +LM +             
Sbjct: 300 RFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAK------------- 346

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE QT +ILELRL +LTGL RD I  E   L   I+E   IL +
Sbjct: 347 -------------YPLSERQTDSILELRLYQLTGLERDKIEAEYLELLKLIEELKVILEN 393

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL  +IK+ELL +K++    R+T I   L D   ED I  E  V+TVSHLG++KR P 
Sbjct: 394 DWRLREVIKEELLVMKEKYGDARKTEITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPS 453

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR+Q+RGGKG  G    DEDFV  LF  STH  ++F +S G    +KV+ +P G   A
Sbjct: 454 ADYRSQKRGGKGVIGTETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTA 513

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
           +GK++ + L LN+GE+I  ++   +  S   + Y+V AT+ G +++  LSD++   R+  
Sbjct: 514 KGKSVSSFLRLNEGEKIAAMLCLQDFAS---DRYLVMATRRGVIKKTALSDYLGTTRNLE 570

Query: 672 -GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF----PISAIRVF--AGRNSVGV 724
            G I + L   D I+     T  ++I+L +  G  VRF    P +   +F   GR + GV
Sbjct: 571 GGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLAVRFRERDPETGEELFRATGRATGGV 630

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            G+      DQ+  + +V H                                        
Sbjct: 631 TGMRFKLDNDQLDVIEVVDHT--------------------------------------- 651

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         +F++  SE G G RT   D+R+ NR G+G+ A  +   N I  +  
Sbjct: 652 -------------AKFLV-ASEAGLGVRTRFEDYRLINRGGRGVWAITLPDDNSIN-IAG 696

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              V D D+I+L++ KG  +R PVN IR  +R  KGV + + A+ ++++S+ ++
Sbjct: 697 ALSVKDTDEIMLLTTKGQSVRCPVNTIREVNRGGKGVKLLTLAEGDKLLSIAKV 750


>gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728]
 gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 314/876 (35%), Positives = 495/876 (56%), Gaps = 92/876 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV  +K Y KCARI GE MG
Sbjct: 12  EIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGETMG 71

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL + A  ++
Sbjct: 72  KYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAEDMM 131

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           DD+ ++TV FR N+DG+  EP  L ++ PN+L+NG  GIAVGMATN+  HNL E+ D  +
Sbjct: 132 DDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICDAIL 191

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +D+ D  +D L++ ++GPDFP G ++     +  AY TGRG ++++G    E  + + 
Sbjct: 192 YEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG----EVDATED 247

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++++  IPY VNKA +++ IA+L + + I DI D++DESDR G R+VI+++      ++
Sbjct: 248 RRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRDDDIKPLV 307

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LNQLY +T+L+S   +  + L G +P+   L  ++ +F+  R +V++RR+++ L++ ++R
Sbjct: 308 LNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLDRKKER 367

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             VL G+  AV ++D VV I++ S + + A          +S +++  DL D        
Sbjct: 368 LDVLTGILTAVEHIDRVVEILKSSKDADEA----------SSKLRNEFDLNDR------- 410

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                    Q +AILE+RL RL    ++ +R+E+  +  EIK+  +I+ S  R +   K+
Sbjct: 411 ---------QIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKK 461

Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E+  ++ +    RR+RI   G+ +   ED I  E+ ++ +S+ G VKRV    YR+QRRG
Sbjct: 462 EITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRG 521

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG     M+  D +  +    +H +V +F++ G V+K K + +P  S  + G +    L
Sbjct: 522 GKG-VNTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFL 580

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L QGER+T IM  P ++      Y++  T+ G+V++           SG   + L+  D
Sbjct: 581 KLAQGERVTEIMKAPPEK----GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDD 636

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++SV     + ++ + +  G+   F  S IR   GR S+GVR + L +GD +++ A V+
Sbjct: 637 ELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTILT-AFVV 694

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           ++D D                                                    IL+
Sbjct: 695 NSDED----------------------------------------------------ILS 702

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +SEKG+GKRT+  +F I +R   G+           G +    PV D D++ILVS     
Sbjct: 703 ISEKGYGKRTNISEFPIHHRGSSGVMV--YRDTERTGRVSHAIPVRDEDEVILVSMNEKT 760

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           IR+  +EI   SR T GV +     D+RV++   I+
Sbjct: 761 IRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796


>gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum]
          Length = 498

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/523 (52%), Positives = 372/523 (71%), Gaps = 27/523 (5%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRRIL+ M ++G+   K Y KCARI GEV+GKYHPHG++++YDAL RMAQ
Sbjct: 1   PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+S+R +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ KDTV+F PN+DG  +
Sbjct: 61  DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP VL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG + +IDNP+  +  LM +I+G
Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTGA I+G++GI+ AY TG+G +++R  + IE+ + +R +I+VTEIPYQVNKA ++E
Sbjct: 181 PDFPTGATIMGKSGIRAAYETGKGRVIVRAKAEIEEEN-NRHRIIVTEIPYQVNKAKLIE 239

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            IA+LV++K+IV I+DLRDESDR+G R+VIELK+ A+ +V+LN LY++T +Q  F V M+
Sbjct: 240 NIADLVKDKKIVGISDLRDESDREGMRIVIELKKDANPNVVLNLLYKHTKMQDTFGVIML 299

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           AL   +P+   +  +L  +++F++EV+ RRT + LNKA  RAH+L GL IA+ N+DEV+ 
Sbjct: 300 ALVNNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDEVIS 359

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           IIR S   E AR  LM+R +N                         LSE Q+ AILE+RL
Sbjct: 360 IIRGSKTSEIARNTLMER-FN-------------------------LSEKQSTAILEMRL 393

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL RD I  E   L   I     IL+S  +LLG+IK ELL +K +    RRT I +
Sbjct: 394 RRLTGLERDKIEEEYAELMKLIDYLNSILASEEKLLGVIKDELLQIKTKYGDERRTSIEK 453

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            + +++ ED I  E++VVT++H GY+KR+    Y AQ+RGGKG
Sbjct: 454 VVNEIDIEDLIQEEEVVVTLTHTGYIKRISADTYSAQKRGGKG 496


>gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
 gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
          Length = 816

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 329/879 (37%), Positives = 509/879 (57%), Gaps = 103/879 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E EK I S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G   +K 
Sbjct: 3   ENEKMI-SINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKH 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RY
Sbjct: 62  YKKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+
Sbjct: 122 TEIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E ++   + IDN +I ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG I++
Sbjct: 182 PPHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H EK    R  I++ EIPYQ+ KA  + K  ELV+E R+  +  +RDESDR G R+
Sbjct: 242 RSKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LK+  +  ++LN L++ T L++ FSVN +AL   KP +  L  ++K FV  R  V++
Sbjct: 301 VFFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA+ RAH++ G  + + +L+ V+ +I+ S + E A+ +L+ +          
Sbjct: 361 RRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYK-------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q ++ILEL+L  LT L  + I+ E   L  +I     I
Sbjct: 413 ------------------LSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +     IIK+EL  +K++    RRT I    L+   E     + +V+T S+ GY+KR
Sbjct: 455 LNDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLEP---NKQVVLTTSYDGYMKR 511

Query: 551 VPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
             L+ Y+ ++ G  G    G     +DF+  + + +TH  +LFF+  G  +  +V+ +P 
Sbjct: 512 TDLNEYKIKKIGVGGIVNMGAYKLKKDFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSW--NNLYVVFATKHGNVRRNKLSDFI 666
           G   ++G+A+ N++ +++ ++I + +   +  + +  NN YV+  TK G +++  L  + 
Sbjct: 572 GYKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYS 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           + N++G  A+K+   D ++  +    +++IL+  K G+ +RF  S +R    R ++GV+ 
Sbjct: 632 KPNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMT-RITLGVKS 690

Query: 727 ISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           I+L+K    D+VI M             IC                       ND     
Sbjct: 691 ITLSKLLSKDKVIGM-------------ICI----------------------NDP---- 711

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN---EIGA 840
                       K+++IL +SE GF         +ISN S    R TD+  IN   + G 
Sbjct: 712 ------------KKEYILVISENGF--------VKISNLS--HYRKTDLKTINITSKTGC 749

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           LVA+  V + D II+++  G  +R+PV EI +  RATKG
Sbjct: 750 LVAIKNVVNKDDIIIINQSGLTLRIPVTEIIVRVRATKG 788


>gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
 gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
          Length = 820

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 324/876 (36%), Positives = 511/876 (58%), Gaps = 95/876 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E EK I S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G   +K 
Sbjct: 3   ENEKMI-SINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKH 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RY
Sbjct: 62  YKKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+
Sbjct: 122 TEIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E ++   + IDN +I ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG I++
Sbjct: 182 PPHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H EK    R  I++ EIPYQ+ KA  + K  ELV+E R+  +  +RDESDR G R+
Sbjct: 242 RSKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LK+  +  ++LN L++ T L++ FSVN +AL   KP +  L  ++K FV  R  V++
Sbjct: 301 VFFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LNKA+ RAH++ G  + + +L+ V+ +I+ S + E A+ +L+ +          
Sbjct: 361 RRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q ++ILEL+L  LT L  + I+ E   L  +I     I
Sbjct: 411 ----------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +     IIK+EL  +K++    RRT I    L+   E     + +V+T S+ GY+KR
Sbjct: 455 LNDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLEP---NKQVVLTTSYDGYMKR 511

Query: 551 VPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
             L+ Y+ +  G  G    G     +DF+  + + +TH  +LFF+  G  +  +V+ +P 
Sbjct: 512 TDLNEYKIKNIGVGGIVNMGAYKLKKDFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSW--NNLYVVFATKHGNVRRNKLSDFI 666
               ++G+A+ N++ +++ ++I + +   +  + +  NN YV+  TK G +++  L  + 
Sbjct: 572 VYKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYS 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           + N++G  A+K+   D ++  +    +++IL+  K G+ +RF  S +R    R ++GV+ 
Sbjct: 632 KPNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMT-RITLGVKS 690

Query: 727 ISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           I+L+K    D+VI M             IC                       ND     
Sbjct: 691 ITLSKLLSKDKVIGM-------------ICI----------------------NDP---- 711

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       K+++IL +SE GF K ++   +R   ++ +GI+  +++  ++ G LVA
Sbjct: 712 ------------KKEYILVISENGFVKISNLSHYR---KTDQGIKTINIT--SKTGCLVA 754

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +  V + D II+++  G  IR+PV EI +  RATKG
Sbjct: 755 IKNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKG 790


>gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 895

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/897 (38%), Positives = 506/897 (56%), Gaps = 96/897 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M   G   ++ + K A
Sbjct: 65  IEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFFKSA 124

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMG++HPHG+++IYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE ++
Sbjct: 125 RVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTETKM 184

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ +DTVDF+ NYDG   EP +L +R+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 185 APLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPPHNL 244

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G   ++ +PD + + L+E     I+GPDFPTGA +LG  GI  AY TGRGSI +R
Sbjct: 245 REVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSITMR 304

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +E+  G R  +VVTE+PYQVN   +  KIAELV++ ++  +AD+RDE S R G R+
Sbjct: 305 AVVAVEEIQG-RVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSGRTGQRL 363

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + +V+V
Sbjct: 364 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQIDVIV 423

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN+A  RAH+L G   A+  LD+V+ +IR S   E AR  LM+           
Sbjct: 424 RRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK----------- 472

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             L+D             + E+Q  AILE++L RL  L R  I+++   L   I E   I
Sbjct: 473 --LLD-------------IDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYNHI 517

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549
           L++ +    II  EL  + D+    RRT I+ G   DM  ED I  E+MVVTV+  GY+K
Sbjct: 518 LATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYIK 577

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  YR+Q RGGKG  G  +R +D V   F+ +TH  +LF +  G VY+ K + L   
Sbjct: 578 RTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEA 637

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G+ + N+L++   E I  ++   + + +    Y+V AT+ G +++  L+++    
Sbjct: 638 GRDAKGQHVANLLAMQPDEEIQQVLDIRDYQVAQ---YLVLATRDGLMKKTALTEYDTNR 694

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727
             G IA+ L   D ++S     +++D+LL ++ G  +RF     A+R   GR++ GV+G+
Sbjct: 695 TGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGVKGM 753

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +    D ++S                                         +SV G    
Sbjct: 754 TFRGDDTLLS-----------------------------------------ASVVG---- 768

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846
                   ++ ++  V+E GF KRT++  +R+ NR G GI+   V+K+ +  G L     
Sbjct: 769 --------EQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIK---VAKLQDARGDLAGALI 817

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V + D+I++V   G ++R  V E+    R T GVV    A D+R++S+ +  E  +V
Sbjct: 818 VGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSERNLV 874


>gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 827

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 326/906 (35%), Positives = 501/906 (55%), Gaps = 115/906 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATN+P HN
Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNVPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+IDNPD+  + L ++I GPDFPTG  I+G TGI+ AY  G+G I++RGV+
Sbjct: 193 LGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEIIGETGIREAYTIGKGGILLRGVA 252

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E     + S  R  I++TE+PYQVNKAA +EK+A+LV + R+  I+DLRDESDR+G R
Sbjct: 253 TLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQ  F   ++A+   +P + +L  +L+ F++FREE +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQPRQLSLRQLLQEFLSFREETL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA+ R H++ GL  A++NLD V+ I+R +P+  TA+  L  +         
Sbjct: 373 NRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSEVQ  AIL + L RLT L + +++ E   +  +I     
Sbjct: 424 -----------------LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQ 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-----------CIVREDM 538
           +L+ R  LL  +K++L S+K +   PRRT+I E      +E                E+ 
Sbjct: 467 LLNDRRELLKALKKDLRSLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEA 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++  +  GYV+R        Q  G K ++   + D DF+    +  T   +L  +  G V
Sbjct: 527 ILEFTQRGYVRRT-------QPSGRKSKAENGLHDNDFIIQTVLTDTQKDLLILTGGGKV 579

Query: 599 YKEKVWRLPIGSPQA-RGKALINILS-LNQG--ERITTIMPFPEDESSWNNLYVVFATKH 654
           Y   V  +P  + ++ RGK LI +LS   QG  E + +    P++  +     ++  TK 
Sbjct: 580 YPVNVGEIPPTTGRSPRGKPLITMLSNTAQGAQEAVVSRFLLPDNLETQQ---MILLTKQ 636

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G ++R  L +F  + R G   +KL   DE+   +       ++L +  G+ +RF  +  +
Sbjct: 637 GRIKRLSLGEFTNLTRRGITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQ 696

Query: 715 V-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +   GR ++G++   L K  Q++                C                  +T
Sbjct: 697 LPIMGRTAMGLQAFRLLKNQQMVG---------------C------------------VT 723

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD-V 832
             K+D                     +L V+++G+ KR ++   R +NR   G +A    
Sbjct: 724 VGKDD--------------------HLLLVTQEGYAKRMAASQLRAANRGDLGTQALKFA 763

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           SK + +  +V       + ++ LV++K  ++R+PV  + I  R  KG  I    +DE+++
Sbjct: 764 SKTDNLAGMVIAIA---SGEVALVTNKERVVRIPVETVPILGRDVKGESIIQLNRDEKII 820

Query: 893 SVERIR 898
           +V  +R
Sbjct: 821 TVAEVR 826


>gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum]
          Length = 793

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 315/876 (35%), Positives = 492/876 (56%), Gaps = 92/876 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV  +K Y KCARI GE MG
Sbjct: 9   EIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGETMG 68

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL + A  ++
Sbjct: 69  KYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAEDMM 128

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           DD+ ++TV FR N+DG+  EP  L ++ PN+L+NG  GIAVGMATN+  HNL E+ D  +
Sbjct: 129 DDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICDAIL 188

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +D+ D  +D L++ ++GPDFP G ++     +  AY TGRG ++++G    E  + + 
Sbjct: 189 YEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG----EVDATED 244

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++++  IPY VNKA +++ IA+L + + I DI D++DESDR G  +VI+++      ++
Sbjct: 245 RRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVRDDDIKPLV 304

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LNQLY +T+L+S   +  + L G +P+   L  ++ +F+  R +V++RR+++ L + ++R
Sbjct: 305 LNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLERKKER 364

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             VL G+  AV ++D VV I++ S + + A          +S +++  DL D        
Sbjct: 365 LDVLTGILTAVEHIDRVVEILKSSKDADEA----------SSKLRNEFDLNDR------- 407

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                    Q +AILE+RL RL    +  +R+E+  L  EIK+  +I+ S  R +   K+
Sbjct: 408 ---------QIKAILEMRLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSEDRRIDEFKK 458

Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E+  ++ +    RR+RI   G+ +   ED I  E+ ++ +S+ G VKRV    YR+QRRG
Sbjct: 459 EITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRG 518

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG     M+  D +  +    +H +V +F++ G V+K K + +P  S  + G +    L
Sbjct: 519 GKG-VNTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFL 577

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L QGER+T IM  P ++      Y++  T+ G+V++           SG   + L+  D
Sbjct: 578 KLAQGERVTEIMKAPPEK----GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDD 633

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++SV     + +I + +  G+   F  S IR   GR S+GVR + L +GD +++ A V+
Sbjct: 634 ELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTILT-AFVV 691

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           ++D D                                                    IL+
Sbjct: 692 NSDED----------------------------------------------------ILS 699

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +SEKG+GKRT+  +F I +R   G+           G +    PV D D++ILVS     
Sbjct: 700 ISEKGYGKRTNISEFPIHHRGSSGVMV--YRDTERTGRVSHAIPVRDEDEVILVSMNEKT 757

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           IR+  +EI   SR T GV +     D+RV++   I+
Sbjct: 758 IRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 793


>gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 825

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 337/905 (37%), Positives = 511/905 (56%), Gaps = 96/905 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   +  +  E +  +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M
Sbjct: 1   MPRQLELTGPEPKARVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 61  HELGLAPDRPFRKCARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTECRL       LL ++   TV+F  N+DGS +EP VL AR P +L+NG 
Sbjct: 121 DNDPPAAMRYTECRLAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VDG VA+IDNP++  + L+ II GPDFPTG  I+G  GI+ 
Sbjct: 181 AGIAVGMATNIPPHNLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGTEGIRE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           AY TGRGSI +RG++H E+    R +   I+VT +PYQVNKAA +EK+AELV   ++  I
Sbjct: 241 AYLTGRGSITMRGITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGI 300

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +DLRDES+R+G RVV+E+KR A  + IL  LYR T LQ+ F   ++ L G +P    L  
Sbjct: 301 SDLRDESNREGVRVVLEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+ F+ FR   + RR +Y L +A +RAH L G  +A+ANL  +V+++  + +   AR E
Sbjct: 361 LLEQFLEFRVATLTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAE 420

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L                  ++SY         LSE Q+  IL++ L RLT L R+ + +E
Sbjct: 421 L------------------EASYG--------LSERQSEEILQMPLRRLTQLDRERLASE 454

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  ++ E    L SR +LLG++K+EL  +K +   PRRT I      +     I  +
Sbjct: 455 HRELREKVIELQSQLDSRRKLLGLLKRELRDLKKKHADPRRTCIEARTAPLPTLAEITSD 514

Query: 537 D-MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           D +VV ++H GYV+R+P + +  +RR    R+     D DFV + +   T   +L  +  
Sbjct: 515 DEVVVQLTHRGYVRRIPAAAF--ERRSRSRRAVSRTEDNDFVVESYPTRTRNELLVITRS 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y  KV  +P   P++RG  L+ +LS+ QGE+I         E+   +L++V  T+ G
Sbjct: 573 GRAYSLKVSEIPETGPRSRGTPLVTLLSI-QGEQIAATF---VRENYPPDLFLVLLTREG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++  LS+   +   G + +KL   D+++ V   T  + I++ T  G+ +RF     ++
Sbjct: 629 RIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLATAHSQIVVGTSAGRLLRFVADEAQL 688

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            A GR+++G++ I L +G+ + +M +V                         G+ E+   
Sbjct: 689 PAMGRSALGLQAIKLRRGESLAAMTVV-------------------------GNGED--- 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L VS  G GKR  + + R+  R+G G   T V  
Sbjct: 721 -------------------------LLMVSRLGLGKRLKTGEIRLQERAGLG---TPVGL 752

Query: 835 INEIG--ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + E    +L+AV  V    ++ + +D+  L++V + E+    R++ G  +      E+++
Sbjct: 753 LRERNGDSLLAVLAVGAEGEVAMATDQERLVQVDLGELAATDRSSPGKPLAVLNPAEQII 812

Query: 893 SVERI 897
           +V R+
Sbjct: 813 AVTRL 817


>gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
 gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
          Length = 834

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 328/882 (37%), Positives = 503/882 (57%), Gaps = 89/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K A
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +++L+ D+  DTV F  NYD S  EP  L    PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EVV    A IDN DI +D +++  I GPDFPTGA++   T ++  Y TGRGS++IR   
Sbjct: 202 KEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTKMREGYKTGRGSVIIRAKI 261

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IEL
Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ 
Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSI 380

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +  NK   R H+L  L IA+ N+D+V+ II+ S   + A+ +L  + +N           
Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTNK-YN----------- 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                           E Q +AIL++RL RL GL RD I  E+ ++   +     +++++
Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDLLINTK 474

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
                ++K +L  + D+    RRT ++ E L+++EDE+ I     ++ +S  GY++R+  
Sbjct: 475 EEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINP 534

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +R Q+RGG+G S V +   D +    +      VLFF++ G VY+ K++ +   S  A
Sbjct: 535 DEFRIQKRGGRGVS-VNVEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTA 593

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           RG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+G
Sbjct: 594 RGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRNG 651

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K A+ L   D+++SV   T ++ I +  + G+ +R   S +     R   GVR + L   
Sbjct: 652 KKAINLRENDQLISVFATTGQDTIFIANESGKVIRIKESVVNP-QSRVGSGVRALKLEAN 710

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+                                              G IS      
Sbjct: 711 DVVV----------------------------------------------GAISS----- 719

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              K   I TVS KG  K+T   D+RIS R+GKGI+  ++++    G   A+    + D 
Sbjct: 720 --FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIDARETDL 775

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I+++S  G LI+  V+ I   SR   GV     A ++ + ++
Sbjct: 776 ILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAI 817


>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
          Length = 1031

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 296/722 (40%), Positives = 432/722 (59%), Gaps = 43/722 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +V +  E++ S++ YA+++ILGRA+PD+RDGLKPVHRRIL+ M  + +     + KCA
Sbjct: 165 VVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRKCA 224

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YDAL RMAQD+ +   LI+G GNFGS+D DP AA RYTEC+L
Sbjct: 225 RVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTECKL 284

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   LL D+  DTVD   N+DG+ +EPVVL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 285 SSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATGIAVGMATNIPPHN 344

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVV   +A+I NP I  D L  ++  PDFPTG  I+G  G +  Y T  G + +R  +
Sbjct: 345 LGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRIMGLAGARKLYTTSNGGVTLRATT 404

Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           HIE    K    R  +VVTE+PYQVNK+++L+++AE+V +K++  I+DLRDESDR G RV
Sbjct: 405 HIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGISDLRDESDRDGVRV 464

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEV 368
           V+ELKR A+  V+ N L++ T LQ+ FS NM+AL  +G KP RF+L   +++FV FR   
Sbjct: 465 VVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLRAAIQSFVDFRFTT 524

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L K R R H++ G+  A+  +D V+ ++R S +   AR  LM   +      
Sbjct: 525 VRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARDGLMAEPYG----- 579

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL RLT +    ++ E   L   ++   
Sbjct: 580 --------------------LSQEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMERLE 619

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +++  S+++ II +EL   K++   PRRT I     ++ +ED +  ++ VV V+  GY+
Sbjct: 620 GVMNEDSKVMDIIVEELTEAKNKHAVPRRTMIKPDEGELHEEDLLANDNSVVVVTAAGYI 679

Query: 549 KRVPLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+PL  + AQ RG +G++G  M  D D V   F    H ++LF S  G  Y  + +++P
Sbjct: 680 KRMPLEEFTAQNRGTRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQVP 739

Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +GS  A+G  +  +L +   E+I +++    F EDE      Y+V  T+ G ++R  L+ 
Sbjct: 740 VGSRTAKGVPVPQVLPIAGDEQIASVLAVDDFREDE------YLVLLTQKGYIKRTPLAA 793

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVG 723
           F   +  G I + L   D +  V+ C  EN I++ +K G   RF  +   +  +GR S G
Sbjct: 794 FKSTSSRGLIIISLGEDDTLRWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRG 853

Query: 724 VR 725
           V+
Sbjct: 854 VK 855



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 17/137 (12%)

Query: 770 EEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           EE+T  KN  +V         EG + EE   +L   +  ++ V+  G+ KR    +F   
Sbjct: 634 EELTEAKNKHAVPRRTMIKPDEGELHEE---DLLANDNSVVVVTAAGYIKRMPLEEFTAQ 690

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           NR  +G     +S  +++  +   F   D+D I+ VSDKG    +   ++ + SR  KGV
Sbjct: 691 NRGTRGKAGAKMSSDHDV--VQHFFTCQDHDTILFVSDKGVAYGIRAFQVPVGSRTAKGV 748

Query: 881 V---IFSTAKDERVVSV 894
               +   A DE++ SV
Sbjct: 749 PVPQVLPIAGDEQIASV 765



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 48/299 (16%)

Query: 629 RITTIMP----FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-R 681
           R T I P      E++   N+  VV  T  G ++R  L +F   NR   GK   K+ S  
Sbjct: 647 RRTMIKPDEGELHEEDLLANDNSVVVVTAAGYIKRMPLEEFTAQNRGTRGKAGAKMSSDH 706

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNSVGV---RGISLAKGDQVIS 737
           D +    TC   + IL  +  G  V + I A +V  G R + GV   + + +A  +Q+ S
Sbjct: 707 DVVQHFFTCQDHDTILFVSDKG--VAYGIRAFQVPVGSRTAKGVPVPQVLPIAGDEQIAS 764

Query: 738 MA----------IVLHADADYDERICYMKHMSAQRR---LIS-GDTEEITSLKNDSSVEG 783
           +           +VL     Y +R       S   R   +IS G+ + +  +K      G
Sbjct: 765 VLAVDDFREDEYLVLLTQKGYIKRTPLAAFKSTSSRGLIIISLGEDDTLRWVKRCCDENG 824

Query: 784 NI--------------------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
            +                    S    + +K +   +L ++ +G+GKR +  +F+ + R 
Sbjct: 825 IVIGSKQGYATRFLANQKDLRPSGRTSRGVKEEGHSLLVLTTRGYGKRVALNEFKTTRRG 884

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           GKG+ A  + +  E   L     V  +D+I+L + +GT++R     I   SR   GV++
Sbjct: 885 GKGVIALKLRQKLE-DTLACFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIV 942



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 59/110 (53%), Gaps = 9/110 (8%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI---NEIGALVAVFP 846
           CQ+       IL VS+KG      ++   + +R+ KG+    V  I    +I +++AV  
Sbjct: 715 CQD----HDTILFVSDKGVAYGIRAFQVPVGSRTAKGVPVPQVLPIAGDEQIASVLAVDD 770

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +++ ++L++ KG + R P+   +  S +++G++I S  +D+ +  V+R
Sbjct: 771 FREDEYLVLLTQKGYIKRTPLAAFK--STSSRGLIIISLGEDDTLRWVKR 818


>gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
 gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
          Length = 838

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 330/916 (36%), Positives = 506/916 (55%), Gaps = 121/916 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID+PD+  + L+E+I GPDFPTG  I+G  GIK AY TG+G I++RGV 
Sbjct: 193 LGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKEAYNTGKGGIILRGVV 252

Query: 255 HIE---KTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E    T G R +  I+VTE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDRQG R
Sbjct: 253 SLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRDESDRQGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+ + ++ QLY+ T+LQ+ F   ++AL   +P + +L  +L+ F+ FRE+ +
Sbjct: 313 VVIELKRDANPEEVIGQLYQQTALQTTFGAILLALVEGQPRQLSLRQMLQEFLRFREDTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA +RA ++ GL  A++ +DEV+ I+R SP+  TA+  L Q+         
Sbjct: 373 NRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKMVLCQQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + L+E Q  AIL + L RLT L + +++ E + L  +I     
Sbjct: 424 -----------------LELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQITSLRR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-------------EDEDCIVR- 535
           +L  R  LL  +K++L ++K +    RRT+++ G + +             E E   +  
Sbjct: 467 LLEDRRELLKSLKKDLRTLKRKYGDTRRTKLIPGQIAVKPDKVNNQPSSPGEKEKSKISP 526

Query: 536 -----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  ++  +  GYV+R+     +A       ++  +  D DF+    I +TH  +L
Sbjct: 527 EEQPPEPAILEFTQRGYVRRLAPGSKKA-------KAETITGDNDFLIQTEITNTHQDLL 579

Query: 591 FFSSLGFVYKEKVWRL-PIGSPQARGKALINILS-LNQG--ERITTIMPFPEDESSWNNL 646
             ++ G VY  KV  + PI +   RG  LI +L+   QG  E I      PE + + +  
Sbjct: 580 ILNTSGKVYPVKVGDISPISARSPRGMPLITLLTNTAQGNVEGILGRFILPETKDTHD-- 637

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +V  TK G ++R  L +   +++ G   +KL   D++   +     ++++L +  G+C+
Sbjct: 638 -MVIVTKQGRIKRLSLEELTNVSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRCL 696

Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RF I+  ++   GR ++G++   + K  Q+IS   +     + +E +  +      +R+ 
Sbjct: 697 RFAINDDQLPVMGRAAMGLQSFRILKSQQIISCVTI-----EQEENLLLVTQEGYAKRIS 751

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           SG                                                  R  NR   
Sbjct: 752 SG------------------------------------------------SLRAGNRGDL 763

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI+       N+   LVA+   N + +++LV++K  +++  V  I I  R  +G  IF  
Sbjct: 764 GIQMLKFH--NKTDNLVAITRTNTSQKVVLVTNKERMVKTSVQSIPILDRDARGENIFPM 821

Query: 886 AKDERVVSVERIRESE 901
            +DE + SV  + E+E
Sbjct: 822 TRDEVITSVVVVLETE 837


>gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 862

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 337/903 (37%), Positives = 504/903 (55%), Gaps = 100/903 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   +  + K A
Sbjct: 12  IKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDNSFSKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G+VMG YHPHG+ AIYD + R+ Q WS+R  L+ GQGNFG+      AA RYTE R+
Sbjct: 72  KVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTPGDLGAAAPRYTEVRM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ + TVDF PNYDGS  EP VL +R+PN+LVNG  GIAVGMAT IP HNL
Sbjct: 132 APLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSEGIAVGMATRIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV  G    ++NPD      L AL++ I+GPDFPTGA+ILG  GI++ Y TG GSI  R
Sbjct: 192 REVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTRGIEDMYRTGHGSITQR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V  +++  G R+ +VVT++PYQVN   +L+K+ E +++ R+  IAD+RDE S R G R+
Sbjct: 252 AVVEVDEIHG-RQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGIADIRDETSGRAGQRI 310

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LK+ A A V+LN LY++T LQ+ F  NM+AL    P   +L G ++ +V F+ EV++
Sbjct: 311 VVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVDGVPRTLSLDGFVRHWVTFQMEVIL 370

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A  R H+L G   A+  LD V+ +IR S   + AR  LM          DL
Sbjct: 371 RRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLARTGLM----------DL 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +++ +D                Q  AILE++L RL  L R  I +E       + +  DI
Sbjct: 421 LEIDED----------------QANAILEMQLRRLAALERQKIIDEYEEKAALVADYKDI 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++   R   II +EL ++ D+    RRT I+    +M  ED I  ED+VVT++  G++KR
Sbjct: 465 IAKPERQRAIIGEELGAIVDKYGDDRRTTILPFDGEMSVEDLIPEEDVVVTITRGGFIKR 524

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              S YRAQ RGGKG  G  +R +D V    + STH   LFF++LG VY+ K + +P   
Sbjct: 525 TKTSEYRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNLGRVYRIKGYEIPEAG 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+   GE I + +     + +    Y+V AT  G V++ +LSD+     
Sbjct: 585 RDAKGQHIANLLAFQPGETIASTITLKGYDQAQ---YLVLATADGLVKKTRLSDYDSPRT 641

Query: 671 SGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            G IA+KL    +  D +++     +++D+LL ++ G  +RF  +  A+R   GR S GV
Sbjct: 642 GGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLRFKATDEALRPM-GRPSSGV 700

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G+   +GD +++M                        R++  + E              
Sbjct: 701 TGMKFREGDSLLTM------------------------RVVRDNAE-------------- 722

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  V+E GF KRTS  ++RI  R+G GI+   +++  E G LV  
Sbjct: 723 ---------------VFVVTEGGFAKRTSVDEYRIQGRAGLGIKVAKLTE--ERGDLVGA 765

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             + + + ++++ + G ++R    E+    R T+GV        +R++++ R  E+ I  
Sbjct: 766 L-ITEGEDVMVIMESGKVMRASAAEVSKTGRNTQGVTFARPDGGDRIIAIARNIETTI-- 822

Query: 905 EAE 907
           EAE
Sbjct: 823 EAE 825


>gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
 gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
          Length = 815

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 320/889 (35%), Positives = 509/889 (57%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 9   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ + TVDFR NYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D  V ++++  + +  L+ I++GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYNESLVKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+   D   I++T+IPY VNK+++L KIA L++E+++  I+D+RDESDR+G R
Sbjct: 249 IRSRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+E+V
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISEFIDHRKEIV 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L KARD+AH+L GL I++ ++D V+ IIRFS   + A +E + + +N      
Sbjct: 369 RRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDA-KECIIKEFN------ 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L  + +  E   +   IK+  D
Sbjct: 422 -------------------LSEIQANSILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S  R++ I+++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 463 ILVSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+    Y+ Q  GGKG     ++D+D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRILQDEYKLQGIGGKGLGSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G+ +  +++L + E I  I     +E S +N Y++  T +G + R +   F  
Sbjct: 583 DSSRTSKGQNIRELINLGETEEILAIKNC--NELSLDN-YLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I +KLD +D + S E  ++ + I+  +K G    F  + IR+   R + GV G+
Sbjct: 640 VKSRGVIVIKLDDKDFVTSAEIVSKNDKIICISKKGNAFAFNSNDIRL-THRGTQGVSGM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I                   K +SA+                          
Sbjct: 699 KVREGDMLI-------------------KALSAK-------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   +   +L VSE G+GKR          R   G      S   + GA+V    V
Sbjct: 714 --------QGSHLLIVSENGYGKRLEISRVTELKRGATGYTCYKKSD-EKAGAVVDAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +D+I+LVS    ++R  V++I    +  +G+ + S  +D +++SV +
Sbjct: 765 AQDDEILLVSKTSKVLRTLVDKISEQGKDARGMQVLSLDED-KLMSVSK 812


>gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 834

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 331/869 (38%), Positives = 498/869 (57%), Gaps = 91/869 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K A
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +++L+ D+  DTV F  NYD S  EP  L    PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EVV    A IDN DI +D ++ + I GPDFPTGA++   + ++  Y TGRGS++IR   
Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI 261

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IEL
Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ 
Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVSVIIKRSI 380

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ EL  + +N           
Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNK-YN----------- 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SS 493
                           E Q +AIL++RL RL GL RD I  E+ ++  E    LD+L ++
Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDVLINT 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +     ++K +L  + D+    RRT ++ E L+++EDE+ I     ++ +S  GY++R+ 
Sbjct: 474 KEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRIN 533

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              +R Q+RGG+G S V     D +    +      VLFF++ G VY+ K++ +   S  
Sbjct: 534 PDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRT 592

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+
Sbjct: 593 ARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRN 650

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GK A+ L   D+++SV   T ++ + +  + G+ +R   S +     R   GVR + L  
Sbjct: 651 GKKAINLRENDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVRALKLED 709

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+                                              G IS     
Sbjct: 710 DDVVV----------------------------------------------GAISS---- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               K   I TVS KG  K+T   D+RIS R+GKGI+  ++++    G   A+    + D
Sbjct: 720 ---FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIGARETD 774

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV 880
            I+++S  G LI+  V+ I   SR   GV
Sbjct: 775 LIMIISSDGNLIKTKVSNIPSLSRNASGV 803


>gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 835

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 330/910 (36%), Positives = 500/910 (54%), Gaps = 123/910 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG + +IDNPD+  + L EII GPDFPTG  I+G +GI+ AY TG+G IV+RGV+
Sbjct: 193 LGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIVGNSGIREAYTTGKGGIVLRGVA 252

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E     K S  R  I++TE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDR+G R
Sbjct: 253 TLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   IL  LY  T+LQ+ F   ++AL   +P + +L   L+ F+ FRE  +
Sbjct: 313 VVIELKRDTNPQEILQHLYHQTALQTTFGAILLALVEGQPRQLSLRQTLQEFLNFREHTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA +R +++ GL  A++ LDEV+ I+R + +  TA+  L ++         
Sbjct: 373 NRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCRQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSEVQ  AIL + L RLT L + +++ E +SL  +I     
Sbjct: 424 -----------------LDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----------EGLLDMED---------E 530
           +L  R  LL  +K++L S+K +   PRRT+I+          +G  + ED         +
Sbjct: 467 LLEDRRELLKALKKDLRSLKRKYSDPRRTKILAINETPIKSEKGTTETEDNPKSKLQTPK 526

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E+ ++  +  GYV+R+  +       G K ++   + + DF+    +  T   +L
Sbjct: 527 SEQPPEEAILEFTQRGYVRRLSPT-------GKKPKAENGLHENDFIIQTELTDTEKDLL 579

Query: 591 FFSSLGFVYKEKVWRLP-IGSPQARGKALINIL-SLNQG--ERITTIMPFPEDESSWNNL 646
             ++ G VY  KV  +P I     RG  LI +L S  QG  E +      PE       L
Sbjct: 580 ILNTGGKVYPVKVGDIPAITGRSPRGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQML 639

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   TK G ++R  + +F  ++R G   +KL   DE+   +  T    ++L +  G+ +
Sbjct: 640 LL---TKQGRIKRLSMEEFANLSRRGITILKLKDDDELSFTQFTTTGQHLILASSSGRLL 696

Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RF ++  ++   GR ++G++   L K  Q++  A V   D                    
Sbjct: 697 RFAVNEEQLPIMGRAAMGLQAFRLLKNQQMVGCATVGKDD-------------------- 736

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                           Q +L V+++G+ KR  + + R +NR   
Sbjct: 737 --------------------------------QLLL-VTQEGYAKRIPASNLRAANRGDL 763

Query: 826 GIRATDV-SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           GI+     +K + +  +V   P     ++ LVS+K  ++R+PV+ + I  R  KG  +  
Sbjct: 764 GIQMLKFHNKTDNLAGMVRATP---GVEVALVSNKERVVRIPVDTVPILDRDAKGESVLQ 820

Query: 885 TAKDERVVSV 894
             +DE++++V
Sbjct: 821 LNRDEKIITV 830


>gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 793

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/728 (40%), Positives = 455/728 (62%), Gaps = 47/728 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRIL+   ++G+  NK + K A
Sbjct: 5   IYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAHKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+YDAL RMAQD++ R  LI+G GNFGS+DGD  AA RYTE +L
Sbjct: 65  RLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYTETKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+++ ++TV FR N+DG+ QEP VL ++ PN+L+NG  GIAVGM+T+IP HNL
Sbjct: 125 TEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+D  + +++ P+  LD +++  + GPDFPTGA I+G  GIK+AY  G+G I++R  S
Sbjct: 185 AEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIVGNEGIKSAYENGKGKIILRAKS 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G  + I++TEIPYQ+NK+ ++E+IAELV + ++  ++DLRDESD+ G R++I L
Sbjct: 245 KIEK-EGRHKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIRILIAL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K GA  ++ LN+LY+YTS+QS F +N++AL+  KP+   L+ IL  F+ FR+EV+   TK
Sbjct: 304 KSGADPELTLNRLYKYTSMQSSFRINLLALDNKKPKVMGLLEILNHFIEFRKEVIKNHTK 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNK+ +R H+L GL IA+  LD V++IIR S     A+ +L+++              
Sbjct: 364 YNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQ-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + +SEVQ ++IL+++L RL G+  + +  E   L  +IKE   IL+  
Sbjct: 410 ------------LNISEVQAQSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILTEE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L   +K EL  +KD+    RRT I+E     ++  +D I  ++ VV++S+ G +KR  
Sbjct: 458 KTLKEYLKNELKEMKDKFADKRRTTIIEDDEKAEINKQDLIKEKEAVVSLSYRGIIKR-- 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                      +  S +     D++      S+   +LFFS  G VY  +V  L      
Sbjct: 516 ----------NEEYSNLRAAKNDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHGL 565

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A G  L   + L   E I ++    + ++  NN Y VF T+ G ++R    ++ + N S 
Sbjct: 566 ATGDNLSKYMQLPLEENIISLNILSK-KNKQNNFY-VFVTESGQIKRTAAKEY-ETNYSH 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+KLD+ D++++VE   +++ I++ ++ G  +RF   +     GRN++G + I LAK 
Sbjct: 623 IRAIKLDN-DKLINVEKAEEKDQIMIISQNGYAIRFKGKSFSS-TGRNTMGSKAIKLAKN 680

Query: 733 DQVISMAI 740
           D+V + +I
Sbjct: 681 DKVTAFSI 688



 Score = 37.7 bits (86), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 11/111 (9%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L ND  +    +EE+ Q        I+ +S+ G+  R     F  + R+  G +A  ++K
Sbjct: 628 LDNDKLINVEKAEEKDQ--------IMIISQNGYAIRFKGKSFSSTGRNTMGSKAIKLAK 679

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            +++ A  ++F  N N  ++ V++ G   ++ +++ R+  R  +G  IFS 
Sbjct: 680 NDKVTAF-SIF--NKNKYLVSVTETGRANKIKLSQFRLQKRNGRGQRIFSN 727


>gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A
 gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1]
          Length = 810

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 312/889 (35%), Positives = 500/889 (56%), Gaps = 87/889 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD                    ++K +S +                           
Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I+LVS +   +R    ++    +  +G+ +     D  +VSV + 
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808


>gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 804

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 326/881 (37%), Positives = 491/881 (55%), Gaps = 88/881 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   SI +EMQ+SY+ YA++VI+GRA+PD RDGLKP  RRIL+ M ++    +++  K A
Sbjct: 5   IVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A Y+ L RMAQD+S+  +L+EGQGN GSVDGDPPAA+RYTE RL
Sbjct: 65  RVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEVRL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K A  +L D+ K++V F PN+D +  EPVVL ++ PN+++NG  GIAVG+ATNI  HNL
Sbjct: 125 RKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV     A +DN +I    L+  ++GPDFPTG ++     +  +Y  GRGS+ IR    
Sbjct: 185 REVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGRLIESYIKGRGSVTIRARVS 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK     E+IV+ EIPY VNKA+++EKI  LV+++ I  I+DLRDESD++G R+ IELK
Sbjct: 245 IEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
              + D +LN LY++T LQ    V  VA+ G +     +  ++K FV  R  VV+ RT Y
Sbjct: 304 ANTNPDYVLNALYKHTQLQITMPVMNVAVLGNRLLNLNIRDMIKIFVEHRFGVVINRTNY 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL IA  ++D VV IIR S N   A+  LM +               
Sbjct: 364 DLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAKYG------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        ++E Q  AIL+++L++LT L  ++++ E   L   I     +L S+ 
Sbjct: 411 -------------ITEAQAAAILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGSKE 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++  IIK E   + ++    RRT I    L+++E+ED I  ED ++ ++  GY+KR+P+ 
Sbjct: 458 KVYQIIKDETKEIAEKYGIDRRTAIETSELVEIENEDLIKDEDSIIILTKDGYMKRLPMD 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VY+ Q RGG+G   + +++ DFV  +    T   +L  +S G VY  K + +P G   A+
Sbjct: 518 VYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRYAQ 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA +N++S+ +GERI  I+    D S  N   ++FAT+ G ++  K   F +   +G  
Sbjct: 578 GKAAVNLISIAEGERIEQIIN-TRDFSGKN---LIFATRRGRIKSTKAELFSRPRANGIR 633

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KL+  D ++ V   T  +++ L T+ G+ +RF  S +R   GR + GVRGI L   D+
Sbjct: 634 AIKLNEDDIVVGVCLSTGGSNVFLATRNGKAIRFMESDLR-HMGRVASGVRGIRLKPNDE 692

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ + +     AD  + I                                          
Sbjct: 693 LVDVVV-----ADPKKNI------------------------------------------ 705

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 +T++E+G+GK T    +R+  R G G+    V++  + G +V V     +D +I
Sbjct: 706 ------ITITERGYGKATLLERYRLQRRGGGGVINLKVTE--KTGKVVRVLDGEQDDNVI 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + + KG  IR   N IR+  R   GV +     D +VV  +
Sbjct: 758 IFNSKGLSIRFNANAIRVTGRNASGVRLMKLEADAKVVDAQ 798


>gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a]
          Length = 810

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 311/889 (34%), Positives = 501/889 (56%), Gaps = 87/889 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+ +L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD                    ++K +S +                           
Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I+LVS +   +R    ++    +  +G+ +     D  +VSV + 
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808


>gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1]
          Length = 791

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 320/874 (36%), Positives = 486/874 (55%), Gaps = 93/874 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV  +K Y K ARI GE
Sbjct: 6   IEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIGE 65

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            MGKYHPHG+++IY+ALARMAQD+SLR  LI+GQGNFGS+DGD PAA RYTE RL K A 
Sbjct: 66  TMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMAE 125

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            ++ D+ K+TV F PN+DGS  EPV   +R P +L+NG  GIAVGMATN+  HNL E+ D
Sbjct: 126 EMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEISD 185

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +  ID+PD  ++ L++ ++GPDFP G +I   + + N Y TG G +  +G    E   
Sbjct: 186 AIMYGIDHPDCSVEDLLKFVQGPDFPGGGMIYRNSDLLNIYRTGHGKVFCQG----EIDD 241

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            ++++I++  +PY VNKA  ++ +AE V+   I +I+D+RDESDR G RVVI++K   S 
Sbjct: 242 EEKKKIIIKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDDSK 301

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            + +NQLY +T L++   VN + L   +P+  TL  ++  F+ FR E++ +R+ + +NK 
Sbjct: 302 GLTINQLYEHTPLETTIGVNNLVLLNNEPKVMTLDEMILGFIDFRLEIIRKRSVFEVNKL 361

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            DR H+L GL IA+ N+D V++IIR S N + A+  LM +                    
Sbjct: 362 MDREHILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQ-------------------- 401

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + LSE Q  AIL++RL RLTGL    I +EL S+   I+   +I+++ S+   +
Sbjct: 402 ------LSLSEKQALAILDMRLQRLTGLEIKKINDELISIKENIERLNEIINNESKRRDV 455

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +KQE L +K +    RRT+++   ++   DED I  E+ ++ +S  G +KRV    Y  Q
Sbjct: 456 LKQETLEIKKQFGDVRRTKVLNRDINARNDEDIIPNEESIMILSENGLLKRVSSEEYNVQ 515

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG +    R ED V  +    +H  + FF++ G V + K + +   S  + G    
Sbjct: 516 KRGGKG-TITATRKEDTVRSILSCMSHDMIYFFTNTGRVLRTKAYTIEKKSRTSLGSVGG 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
             L +N+ E+I  IM  P   +S  N +++  TK G ++R  + + + +  SG   +KLD
Sbjct: 575 TFLKMNENEKIKQIMKSP---ASPKN-FLIIITKKGFIKRTPVKEILDMRESGLKIIKLD 630

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +DE++SV    + + I +     +   F +S      GR S GV+ + L  G +VI+  
Sbjct: 631 DQDEVVSVMDLEKPSKIFVAASNNKAAVF-LSDEVSSTGRASRGVKSMRL-NGAEVINSF 688

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +V   D                                                      
Sbjct: 689 LVDDNDT----------------------------------------------------- 695

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +++++E G GKRT   DF I +R   G      S+    G+LV   PV D+ ++++V+  
Sbjct: 696 VMSITENGLGKRTKITDFSIHHRGSSGNLIFKESE--RTGSLVTALPVGDSQEVLIVTRN 753

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              IR+  +EI+I SR T GV + +   D+ VV+
Sbjct: 754 NKTIRLNSDEIKIQSRVTSGVKLINVDDDDLVVA 787


>gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 329/869 (37%), Positives = 499/869 (57%), Gaps = 91/869 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K A
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +++L+ D+  DTV F  NYD S +EP  L    PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EVV    A IDN DI +D ++ + I GPDFPTGA++   + ++  Y TGRGS++IR   
Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI 261

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IEL
Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ 
Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQISVIIKRSI 380

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ +L  + +N           
Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNK-YN----------- 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SS 493
                           E Q +AIL++RL RL GL RD I  E+ ++  E    LD+L ++
Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDVLINT 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +     ++K +L  + D+    RRT ++ E L+++EDE+ I     ++ +S  GY++R+ 
Sbjct: 474 KEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRIN 533

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              +R Q+RGG+G S V     D +    +      VLFF++ G VY+ K++ +   S  
Sbjct: 534 PDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRT 592

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+
Sbjct: 593 ARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRN 650

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GK A+ L   D+++SV   T ++ + +  + G+ +R   S +     R   GV+ + L  
Sbjct: 651 GKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVKALKLED 709

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+                                              G IS     
Sbjct: 710 DDVVV----------------------------------------------GAISS---- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               K   I TVS KG  K+T   D+RIS R+GKGI+  ++++    G   A+    + D
Sbjct: 720 ---FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIGARETD 774

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV 880
            I+++S  G LI+  V+ I   SR   GV
Sbjct: 775 LIMIISSDGNLIKTKVSNIPSLSRNASGV 803


>gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 834

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 330/869 (37%), Positives = 499/869 (57%), Gaps = 91/869 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K A
Sbjct: 22  ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 82  RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +++L+ D+  DTV F  NYD S +EP  L    PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EVV    A IDN DI +D ++ + I GPDFPTGA++   + ++  Y TGRGS++IR   
Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI 261

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IEL
Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ 
Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSI 380

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ +L  + +N           
Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNK-YN----------- 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SS 493
                           E Q +AIL++RL RL GL RD I  E+ ++  E    LDIL ++
Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDILINT 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +     ++K +L  + D+    RRT ++ E L+++EDE+ I     ++ +S  GY++R+ 
Sbjct: 474 KEEQNNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRIN 533

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              +R Q+RGG+G S V     D +    +      VLFF++ G VY+ K++ +   S  
Sbjct: 534 PDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRT 592

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+
Sbjct: 593 ARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRN 650

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GK A+ L   D+++SV   T ++ + +  + G+ +R   S +     R   GV+ + L  
Sbjct: 651 GKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVKALKLED 709

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+                                              G IS     
Sbjct: 710 DDVVV----------------------------------------------GAISS---- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               K   I TVS KG  K+T   D+RIS R+GKGI+  ++++    G   A+    + D
Sbjct: 720 ---FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIGARETD 774

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV 880
            I+++S  G LI+  V+ I   SR   GV
Sbjct: 775 LIMIISSDGNLIKTKVSNIPSLSRNASGV 803


>gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
 gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
          Length = 810

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 312/889 (35%), Positives = 502/889 (56%), Gaps = 87/889 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                 SS+         LSE+Q  ++L++RL +LT L    +  E N L   IK+  DI
Sbjct: 413 ------SSFG--------LSEIQANSVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD                    ++K +S +                           
Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I+LVS +   +R    ++    +  +G+ +     D  +VSV + 
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808


>gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
 gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
          Length = 810

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 311/889 (34%), Positives = 500/889 (56%), Gaps = 87/889 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD                    ++K +S +                           
Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I+LVS +   +R    ++    +  +G+ +     D  +VSV + 
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808


>gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40]
          Length = 810

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 310/889 (34%), Positives = 500/889 (56%), Gaps = 87/889 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DE+++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD                    ++K +S +                           
Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++D+I+LVS +   +R    ++    +  +G+ +     D  +VSV + 
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808


>gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
 gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
          Length = 835

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 325/915 (35%), Positives = 504/915 (55%), Gaps = 124/915 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID PD+  + L+E+I GPDFPTG  I+G TGI+ AY TG+G IV+RGV+
Sbjct: 193 LGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGETGIREAYITGKGGIVLRGVA 252

Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+  G R       I+VTE+PYQVNKA  +EK+AELV + R+  I+DLRDESDR+G R
Sbjct: 253 TVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQ+ F   ++A+   +P + +L  +L+ F+ FRE  +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFREHTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA  R + + GL  A++NLDEV+ I+R +P+  TA+  L  +         
Sbjct: 373 NRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCSQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  AIL + L RLT L + +++ E   L  +I     
Sbjct: 424 -----------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---------------MEDEDC-- 532
           +LS R  LL  +K++L S+K +   PRRT++    L+                 DED   
Sbjct: 467 LLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTEN 526

Query: 533 ----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                  E+ ++ ++H GY++R+        + G K +    + + DF+    I  TH  
Sbjct: 527 LSPLEPAEEAILEITHRGYLRRI--------QPGKKSKVENGLLEHDFIIQTNITDTHKE 578

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQA-RGKALINILSLN-QG--ERITTIMPFPEDESSWN 644
           +L  ++ G +Y  KV  +P+ + ++ RG  LI +L+   QG  E + + +  PE+ ++  
Sbjct: 579 LLVLTNGGKLYPVKVGDIPLTTGRSPRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQ 638

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              ++  TK G ++R  L +   + R G   +KL   DE+L  +       ++L +  G+
Sbjct: 639 ---LILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKAGQHLILASSGGR 695

Query: 705 CVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +RF  +  ++   GR ++G++   L +   ++    V  A A+Y               
Sbjct: 696 LLRFSANDEQLPIMGRTAMGLQAFRLLRNQCMV--GCVNAAQAEY--------------- 738

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                               +L V+E+G+ KR      + +NR 
Sbjct: 739 ------------------------------------LLLVTEEGYAKRLPVNQIKSANRG 762

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G ++     +N+   L A+   N + ++ L++++  ++R+  + + I  R  KG  I 
Sbjct: 763 DLGTQSMKF--VNKTDNLAAMVGANTSSEVALLTNRERVVRISTDTVPILPRDGKGETIL 820

Query: 884 STAKDERVVSVERIR 898
              +DE+V++V  +R
Sbjct: 821 QLNRDEKVIAVVEVR 835


>gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
 gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
          Length = 1247

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 311/836 (37%), Positives = 488/836 (58%), Gaps = 86/836 (10%)

Query: 65   VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            V+ + ++V    +    +GK+HPHG+ A+YDAL RMAQD+S+R  LI+GQGNFGS+DGD 
Sbjct: 490  VDEDHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGSIDGDS 549

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             AA RYTE RL K +  LL D+ KDTVDFRPN+D S  EP VL AR+PN+LVNG  GIAV
Sbjct: 550  QAAMRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGSAGIAV 609

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
            GMATNIP HNL EV      ++D+ + +   L++ ++GPDFPTGA I+    +K  Y TG
Sbjct: 610  GMATNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINPENLKKIYETG 669

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            RGS+ IR    IE+    +  IV+TE+PYQVNKAA++++IA+LV+EK+I  I+D+RDESD
Sbjct: 670  RGSVTIRAKHTIEEVR-KKTAIVITELPYQVNKAALIKQIADLVKEKKIDGISDIRDESD 728

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R+G RVVIELKR A+ +V+LN+LY++T LQ+ F+ NM+AL   +P+   L   LK F+ F
Sbjct: 729  REGIRVVIELKRDATPEVVLNKLYKFTPLQTNFNFNMIALVNGEPKLLNLKTYLKEFIEF 788

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R EV++R+T + L KA  R H+L GL IA+ N++ V+ I+R S +P  A +EL+++ +  
Sbjct: 789  RREVILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIA-QELLEKEFG- 846

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    LS+ Q++AIL+++L RLTGL R+ I +E  +L  +I
Sbjct: 847  ------------------------LSQKQSKAILDMKLQRLTGLEREKIDSEYEALEKDI 882

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +    +LS+R     +IK+++  +       R+T IV    +++ E  I  E++V+ ++H
Sbjct: 883  EYYRFVLSNREEQKRLIKEDIDEIIKNYGDERKTAIVSKESEIDIESMIEEEEVVIFLTH 942

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             G++ R     Y+ Q R G G  G+  R+ DFV D+   S+   +L F++ G VY  K +
Sbjct: 943  KGFIARTSAKSYKTQGRSGTGVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYWLKAY 1002

Query: 605  RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P      RG+++ N L  ++  E ++ I+P  +D S   +++  F T+ G V+R  LS
Sbjct: 1003 EIPKTEKSTRGQSIRNFLPGMSGAEVVSRIIPV-KDFSEKKDIF--FVTQRGYVKRTSLS 1059

Query: 664  DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +F     +G  A+ L+  D ++ V    ++++ILL +K G+ +RF +  +R   GR++ G
Sbjct: 1060 EFSNPRSTGINAINLEPGDRLIYVGLVEEKDNILLISKGGRAIRFHVQDVRQM-GRSARG 1118

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+ L + D++++  +V   D                                      
Sbjct: 1119 VKGMLLDEEDRIMAGTVVQPDDV------------------------------------- 1141

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++L V EKG+GKR    +F +  R GKG+ A  +S+  + G +  
Sbjct: 1142 ---------------YLLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSE--KTGKIAD 1184

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               + + + +I+VS  G +IRV  +++ + SR T+GV I   +K++ VVSV +++E
Sbjct: 1185 AITLKNEEPVIIVSRNGKIIRVNSSDVPVYSRYTRGVRIQKLSKEDVVVSVSKVQE 1240



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 53/69 (76%)

Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
          I  VSI DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+  +K Y K A
Sbjct: 4  IIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKKSA 63

Query: 76 RISGEVMGK 84
          RI GE   K
Sbjct: 64 RIVGECFVK 72


>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 818

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 333/900 (37%), Positives = 490/900 (54%), Gaps = 108/900 (12%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA+++I+GRAIPD RDGLKPVHRRIL+ M Q+ +  N  + KCAR+ GEV+GK+HPHG
Sbjct: 1   MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGK 148
           + A+YDAL R+AQ +S    LI+G GNFGS+D DP AA RYTECRL K +   LL+DL  
Sbjct: 61  DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID- 207
           DTVDF PN+DG+  EP VL A+ P +L+NG  GIAVGMATNIP HNL E++  C A++  
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180

Query: 208 ---NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-TSG-- 261
                 +    L++++ GPDFPTGA IL   G +  Y TG G IV+R V+ IEK T+G  
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240

Query: 262 ---DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R  I+VTE+PYQVNKAA+LEKIA LV EK++  IADLRDESDR G RVVIELKR A
Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVAL--------NGYKPERFTLIGILKAFVAFREEVVV 370
            A V+LN LY+ T LQ+ FS N +AL        +   P+RFTL   +  F+ FR E + 
Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R++++ L K   R+H++ GL +A+  +D V++I+R S + + AR  L             
Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREAL------------Y 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I+L           GT   S  QT AIL+L+L +LT L +  + +E   L    +    +
Sbjct: 409 IEL-----------GT---SSEQTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L     +  ++++E + +       R++  IVE   D  D D I     V+ V+  GY+K
Sbjct: 455 LEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVIVVTRGGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDF---VTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           R+PL  + +Q RG +G+ G     E     V   F  + H ++L  +  G  Y  + +++
Sbjct: 515 RMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQV 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           PI    A+G+ + ++L +   E IT I+P  E  DE      YVV  T+ G ++R  L  
Sbjct: 575 PIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFSDEE-----YVVLTTEQGWIKRTPLDA 629

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +++  G     L+  D +        E+DIL+ T  G   RF  + +R   GR S GV
Sbjct: 630 FEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRP-TGRTSRGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R + L +GD +  M +                        +SG  +E             
Sbjct: 689 RAMKLREGDTIADMNV------------------------LSGKNKE------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                         +ILTV+ +G+GKR ++ +FR   R G G+ A    +  E   +  +
Sbjct: 712 --------------YILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D+++I++++ +G ++R   ++I    R+  GV++      + + SV  + + E +D
Sbjct: 758 RIVKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSIVPQYEEID 817


>gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
 gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
          Length = 836

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 328/915 (35%), Positives = 506/915 (55%), Gaps = 124/915 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              ++  +L ++  +TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID PD+    L EII GPDFPTG  I+G +GI+ AY +G+GSIV+RGV+
Sbjct: 193 LGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIVGDSGIREAYTSGKGSIVLRGVA 252

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E     K S  R  I++TE+PYQVNKA  +EK+A+LV   R+  I+DLRDESDR+G R
Sbjct: 253 KTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQS F   ++AL   +P + +L  +L+ F+ FRE+ +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQPRQLSLRQMLQEFLKFREQTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA  R H++ GL  A++ LD+++ I+R + +  TA+  L  R         
Sbjct: 373 NRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  AIL + L RLT L + +++ E   L  +I     
Sbjct: 424 -----------------LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQI 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI----------VEGLLDME----------D 529
           +LS R  LL  +K++L S+K + + PRRT++          V+G+  ++           
Sbjct: 467 LLSDRKELLKTLKKDLRSLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNS 526

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
            D    E++++  SH GYV+R+       Q  G K ++   + D DF+    + +T   +
Sbjct: 527 PDAEPPEEVILDFSHRGYVRRL-------QPSGKKSKAENGLPDHDFIIQSDLTATDKEL 579

Query: 590 LFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLN-QG--ERITTIMPFPEDESSWNN 645
           L  +S G VY   V  + P      RG  LI +LS   QG  E + + +  PE+  +   
Sbjct: 580 LVITSSGKVYPVNVGDIRPTTGRSPRGTPLITMLSSTAQGAQEAVVSRLILPENLETRQ- 638

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +V  TK G ++R  L +   + R G   +KL   DE+L  +  T + +++L +  G+ 
Sbjct: 639 --MVLLTKEGRIKRLTLGELTNLTRRGITILKLKEDDELLFTQLTTPKENLILASSGGRL 696

Query: 706 VRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           ++F     ++   GR ++G++ + L K  Q++                C           
Sbjct: 697 LKFAADDQQLPVMGRTAMGLQALRLLKHQQMVG---------------C----------- 730

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                  +T+   D+                    +L V+E+G+ KR    + + ++R  
Sbjct: 731 -------VTAAGEDN--------------------LLLVTEEGYAKRLPVSNLKRADRGN 763

Query: 825 KGIRATD-VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G ++    SK + + A+V       + ++ LV++K  ++R+PV+ + I +R  KG  I 
Sbjct: 764 IGTQSLKFASKTDNLAAMVQAIA---SAEVALVTNKDRVVRIPVDTVPILARDGKGESIL 820

Query: 884 STAKDERVVSVERIR 898
              +DER++SV  ++
Sbjct: 821 DLNRDERIISVMEVQ 835


>gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
 gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
          Length = 835

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 325/915 (35%), Positives = 504/915 (55%), Gaps = 124/915 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID PD+  + L+E+I GPDFPTG  I+G  GI+ AY TG+GSIV+RGV+
Sbjct: 193 LGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGEAGIREAYITGKGSIVLRGVA 252

Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+  G R       I+VTE+PYQVNKA  +EK+AELV + R+  I+DLRDESDR+G R
Sbjct: 253 TVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQ+ F   ++A+   +P + +L  +L+ F+ FRE  +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFRENTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA  R + + GL  A++ LDEV+ I+R +P+  TA+  L  R         
Sbjct: 373 NRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCSR--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  AIL + L RLT L + +++ E   L  +I     
Sbjct: 424 -----------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---------------MEDEDC-- 532
           +LS R  LL  +K++L S+K +   PRRT++    L+                 DED   
Sbjct: 467 LLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKQNSSAKTDEDTEN 526

Query: 533 ----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                  E+ ++ ++H GY++R+        + G K +    + + DF+    I  TH  
Sbjct: 527 LSPLEPAEEAILEITHRGYLRRI--------QPGKKSKVENGLLEHDFIIQTNITDTHKE 578

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQA-RGKALINIL-SLNQG--ERITTIMPFPEDESSWN 644
           +L  ++ G +Y  KV  +P  + ++ RG  LI +L S  QG  E + + +  PE+ ++  
Sbjct: 579 LLILTNGGKLYPVKVGDIPPTTGRSPRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQ 638

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              ++  TK G ++R  L +   + R G   +KL   DE+L  +       ++L +  G+
Sbjct: 639 ---LILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKPGQQLILASSGGR 695

Query: 705 CVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +RF  +  ++   GR ++G++   L +  +++                           
Sbjct: 696 LLRFSTNDEQLPIMGRTAMGLQAFRLLRNQRMV--------------------------- 728

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                              G ++  + + L L       V+E+G+ KR      + +NR 
Sbjct: 729 -------------------GCVNAAQAEHLLL-------VTEEGYAKRLPVNQIKSANRG 762

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G ++     +N+   L A+   N + ++ L++++  ++R+P + + I  R  KG  I 
Sbjct: 763 DLGTQSMKF--VNKTDNLAAMVGANTSGEMALLTNRERVVRIPTDTVPILPRDGKGESIL 820

Query: 884 STAKDERVVSVERIR 898
              +DE+V++V  +R
Sbjct: 821 QLNRDEKVIAVVEVR 835


>gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH]
 gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH]
          Length = 810

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/729 (39%), Positives = 453/729 (62%), Gaps = 32/729 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 4   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 64  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  L+ D+ K TVDFR NYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 124 YTEARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D  V ++D+  + +  L+EI++GPDFPT A I+    +  AY TG+GS+V
Sbjct: 184 MAPHNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYNESLIKAYTTGKGSVV 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+   D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 244 IRARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++ AF+  R+E+V
Sbjct: 304 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISAFIEHRKEIV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +AR++AH+L GL IA+ N+D V+ IIRF+   + A +E + + +N      
Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDA-KECIIKEFN------ 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT +  + +  E   L   IK+  D
Sbjct: 417 -------------------LSEIQANSILDMKLQKLTSIETEKLEEEFKILLALIKDYED 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL+S  R++ I+++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 458 ILNSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+    Y+ Q  GGKG     ++D D V     V+TH  +   S+ G +Y    + + 
Sbjct: 518 IKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIK 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G+ +  +++L + E I  I     +E S +N Y++  T +G + R +   F  
Sbjct: 578 DTSRTSKGQNVRELINLGETEEILAIKNC--NELSVDN-YLLITTANGKIARIETEGFKT 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I +KLD  D + S E  ++   I+  +K G    F    IR+   R + GV G+
Sbjct: 635 VKARGVIVIKLDDNDFVTSAEIVSKNEKIICISKKGNAFAFNSDNIRL-THRGTQGVSGM 693

Query: 728 SLAKGDQVI 736
            + +GD +I
Sbjct: 694 KVREGDVLI 702



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  I+ ++++GF KR    ++++    GKG+ + D+   +++   +    VN +D
Sbjct: 501 DLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLC---VNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +    I+  SR +KG
Sbjct: 558 FLFMISNEGKLYVINAYGIKDTSRTSKG 585


>gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
 gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
          Length = 815

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/729 (39%), Positives = 452/729 (62%), Gaps = 32/729 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ K TV+F+PNYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV D  + ++++ D+ +  L+ II+GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+ S D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+ ++
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS   + AR  +M+          
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE--------- 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L    I  +   +   IK+  D
Sbjct: 420 -----------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S SR++ +I++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV    Y+ Q  GGKG     ++D D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG+ +  +++L + E I  I      E S +N Y++  T +G + R +   F  
Sbjct: 583 DSSRTSRGQNIRELINLGEKEEILAIKNCS--ELSVDN-YLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I MKLD +D + S E  ++++ I+  +K G    F  + IR    R + GV G+
Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698

Query: 728 SLAKGDQVI 736
            + +GD +I
Sbjct: 699 KVREGDMLI 707



 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 762 RRLIS-GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           R LI+ G+ EEI ++KN            C EL + + ++L  +  G   R  +  F+  
Sbjct: 594 RELINLGEKEEILAIKN------------CSELSV-DNYLLITTANGKIARIETEGFKTV 640

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                  R   + K+++   + +   V+ +D+II +S KG       N+IR+  R T+GV
Sbjct: 641 KS-----RGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGV 695


>gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
 gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
          Length = 810

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 300/827 (36%), Positives = 488/827 (59%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+PNYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + D++ I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+D+AHVL GL IA+ N+DE+++II+ S   + A+  L+            
Sbjct: 365 RRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    + +E N L   IK+  +I
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDREEILTI---KNSKDFTDDAYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICISKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLFVKVLAVRENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +GI+
Sbjct: 754 VDAIAVSENDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   V    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
 gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
          Length = 815

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 290/729 (39%), Positives = 452/729 (62%), Gaps = 32/729 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ K TV+F+PNYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV D  + ++++ D+ +  L+ II+GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+ S D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+ ++
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS   + AR  +M+          
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE--------- 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L    I  +   +   IK+  D
Sbjct: 420 -----------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S SR++ +I++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV    Y+ Q  GGKG     ++D D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG+ +  +++L + E I  I      E S +N Y++  T +G + R +   F  
Sbjct: 583 DSSRISRGQNIRELINLGEKEEILAIKNCS--ELSVDN-YLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I MKLD +D + S E  ++++ I+  +K G    F  + IR    R + GV G+
Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698

Query: 728 SLAKGDQVI 736
            + +GD +I
Sbjct: 699 KVREGDMLI 707



 Score = 37.7 bits (86), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 762 RRLIS-GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           R LI+ G+ EEI ++KN            C EL + + ++L  +  G   R  +  F+  
Sbjct: 594 RELINLGEKEEILAIKN------------CSELSV-DNYLLITTANGKIARIETEGFKTV 640

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                  R   + K+++   + +   V+ +D+II +S KG       N+IR+  R T+GV
Sbjct: 641 KS-----RGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGV 695


>gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr]
 gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr]
          Length = 810

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 307/829 (37%), Positives = 487/829 (58%), Gaps = 51/829 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A LV+E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
            S  ++G+ +  +++L   E I TI    E  D+S     Y++  T  G + R + +DF 
Sbjct: 579 SSRASKGQNISELINLGDQEEILTIKNSKELTDDS-----YLLLTTASGKIARFESTDFK 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +   G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G
Sbjct: 634 TVKSRGVIVIKLNDKDFVTSAEVVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCG 692

Query: 727 ISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   
Sbjct: 693 MKLKEGDLFVKVLAIKENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAG 751

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           SV   I+     E       IL VS++    RT +       +  +GI+
Sbjct: 752 SVVDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E+   +    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALC---VNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04]
 gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04]
          Length = 810

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 305/827 (36%), Positives = 486/827 (58%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A LV+E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI    E     ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTIKNSKE---FTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLFVKVLAIRENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +GI+
Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E+   +    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALC---VNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus]
          Length = 545

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 282/570 (49%), Positives = 393/570 (68%), Gaps = 27/570 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++ G ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +    +R+Q+RGG+G  G  + D+DFV D+
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDI 545


>gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 795

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 327/865 (37%), Positives = 492/865 (56%), Gaps = 91/865 (10%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL K +++L+ D+  DTV F
Sbjct: 61  YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             NYD S  EP  L    PN+LVNG  GIAVGMAT+IP HNL EVV    A IDN DI +
Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180

Query: 214 DALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D +++  I GPDFPTGA++   + ++  Y TGRGS++IR     E+     ++ VVTEIP
Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENK-KHDRFVVTEIP 239

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IELK+ A+ DV+L++LY+YT+
Sbjct: 240 YQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYTA 299

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ +  NK   R H+L  L I
Sbjct: 300 LQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALHI 359

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+D+V+ II+ S   E A+ +L  + +N                           E 
Sbjct: 360 ALDNVDDVINIIKNSKTSEEAKIQLTNK-YN-------------------------FDEE 393

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SSRSRLLGIIKQELLSVKDE 511
           Q +AIL++RL RL GL RD I  E+ ++  E    LDIL +++     ++K +L  + D+
Sbjct: 394 QNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDILINTKEEQNNVLKNQLNEIADK 452

Query: 512 LDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
               RRT ++ E L+++EDE+ I     ++ +S  GY++R+    +R Q+RGG+G S V 
Sbjct: 453 FGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVS-VN 511

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGER 629
               D +    +      VLFF++ G VY+ K++ +   S  ARG  ++N L+ L   ++
Sbjct: 512 AEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 571

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+GK A+ L   D+++SV  
Sbjct: 572 ITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFA 629

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            T ++ I +  + G+ +R   S +     R   GVR + L   D V+             
Sbjct: 630 TTGQDTIFIANESGKVIRIKESVVNP-QSRVGSGVRALKLETNDVVV------------- 675

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                            G IS         K   I TVS KG  
Sbjct: 676 ---------------------------------GAISS-------FKLTHITTVSNKGLF 695

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+T   D+RIS R+GKGI+  ++++    G   A+    + D I+++S  G LI+  V+ 
Sbjct: 696 KKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIDARETDLILIISSDGNLIKTKVSN 753

Query: 870 IRIASRATKGVVIFSTAKDERVVSV 894
           I   SR   GV     A ++ + ++
Sbjct: 754 IPSLSRNASGVKAIRLADNQEINAI 778


>gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
 gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
          Length = 810

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 301/827 (36%), Positives = 485/827 (58%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  ++VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RAKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV+++I+ S   + A+  L+            
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++  ++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDACLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLFVKVLALRENPYLLIISENGYGKRLSVSK-ISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +G++
Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGVQ 793



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   V    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
 gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
          Length = 810

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 303/827 (36%), Positives = 485/827 (58%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ + A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V++H  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSK-ISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +GI+
Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   +    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALC---VNSHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
          Length = 522

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/514 (52%), Positives = 361/514 (70%), Gaps = 9/514 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 7   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 67  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 127 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 187 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 246

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 247 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 307 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 367 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 426

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 427 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            L IL S  RL+ +I++EL  V+++    RRT I
Sbjct: 487 LLRILGSADRLMEVIREELELVREQFGDKRRTEI 520


>gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51]
 gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 808

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 322/888 (36%), Positives = 484/888 (54%), Gaps = 91/888 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ IT  S+ + +  SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+  +K Y 
Sbjct: 5   EENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYS 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+ MGKYHPHG+++IYDA  RMAQ W+ R  LI+GQGNFGS+DGD  AA RYTE
Sbjct: 65  KSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+   +  +  D+ KD + F+PNYD   +EP+VL + +PN+LVNGG GIAVGMA+NIP 
Sbjct: 125 MRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EVV   +  IDNP + L+ LME ++GPDFPTG +I+G  G   AY +GRG + +RG
Sbjct: 185 HNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMRG 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     +  IV+TEIP+QV+K+ +  KI       +I  I+++RDESDR+G R+V+
Sbjct: 245 KAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           E K+ A    IL  LY+YT LQ  F  +N+V      P    L  I ++++  R+EVV+R
Sbjct: 305 ECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRKEVVLR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S  P  A+  L+ R           
Sbjct: 365 RTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SEVQ +AIL+++L  LT L  D IR E   +   I E   IL
Sbjct: 414 ---------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRED--MVVTVSHLGYV 548
           +  +++  IIK EL  + ++    RRT I+ E + D  D       +  M V ++  G++
Sbjct: 459 ADINKVYTIIKHELKQIAEQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGFI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++P    R+Q            +D D + +    ++  ++ FF+  G  Y  K   +  
Sbjct: 519 KQIPTPTRRSQINA----IAFAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVAE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+A+ N+  L + ERI  ++   E++      Y VF TK G V R+ + DF  +
Sbjct: 575 AGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQ---YFVFVTKDGQVMRSPVKDF--L 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N     AM L  +DEI+ V     E ++ L +  GQ +RF  + +    GR S GV+G++
Sbjct: 630 NARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPM-GRKSRGVKGMT 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  A+++   AD +                +GD                    
Sbjct: 689 LNEGDYVVD-ALLIQPGADGE----------------TGD-------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGALVAVFP 846
                      ++TV+E+G+ KRTS  +++   R+G+GI     D  K   + +L+ V P
Sbjct: 712 -----------LITVTEQGYVKRTSLVEYKPQGRAGRGIAIAKIDAEKTGNLVSLIQVGP 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             D   + ++   GT+  V    ++  SR   G  + +   ++ +V V
Sbjct: 761 KEDK-LLHIIQAGGTVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807


>gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens]
          Length = 915

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 330/927 (35%), Positives = 488/927 (52%), Gaps = 119/927 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + S  EE      + +  E+  S++ YA++ ILGRA+PD RDGLKPVHRRILF M ++ +
Sbjct: 54  LRSTTEEHTAPIPIELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMRELNL 113

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+ +   L++G GNFGSVD DPP
Sbjct: 114 TPGTPYRKCARVVGEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDADPP 173

Query: 126 AAERYTECRLQKAAHFLL---DDLGKD----------TVDFRPNYDGSFQEPVVLCARYP 172
           AA RYTEC+L K A+  L   DDLGK           +V+F  N+D S  EP VL AR P
Sbjct: 174 AAMRYTECKLTKFAYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPARVP 233

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTG 228
            +LVNG  GIAVGMAT+IP HNLGEV D  + V            D L   +  PDFPTG
Sbjct: 234 VLLVNGAAGIAVGMATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDFPTG 293

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
            +I+G TG+  AYATG+GSIVIR  +H EK    R  IV TE+PYQV K+ +L K A+ +
Sbjct: 294 GLIMGTTGVARAYATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKTADAI 353

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY- 347
             +RI  IADLRDES R+G RVV ELKR A A+++L+ L++ T LQ+ F  N+VA++   
Sbjct: 354 NARRIEGIADLRDESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAVDHAL 413

Query: 348 --------KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
                    P R TL   L+ +++FR + V  R  +   +A  R H++ GL +A AN+D 
Sbjct: 414 NDDGDDVRSPVRMTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATANVDA 473

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           VV +IR S  P  A+ +L++                     I + G   LSE Q  A+L 
Sbjct: 474 VVALIRASDAPADAKAKLVE------------------GGAIPAMGA--LSEDQASAVLA 513

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           L L+RLT L  D + +E   L ++++    ++S  + +   +  E+ ++K    TPRR+ 
Sbjct: 514 LTLSRLTTLEADKLDSERKDLEVKLEGLRKLMSEDAAVYDAVVDEVAAIKKAYPTPRRSE 573

Query: 520 IV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
           IV +G  ++ DED I      V V+  GYVKR  L  + AQ RGG+GR+ +       + 
Sbjct: 574 IVFDGDAELRDEDVIENARSAVLVARDGYVKRTSLEEFGAQSRGGRGRNAL---QGGTLR 630

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---- 634
            L     H ++L  +  G  Y  + + +P  S  ARG  + ++L +++  RI  ++    
Sbjct: 631 HLVTCHDHDTLLCIADTGVAYGVRAFNVPQASRAARGVPVPSVLPVDRSTRIKGLLAVAH 690

Query: 635 -----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
                P P D+   + L++V  T++G V++  L+ F  +   G IA+KL   D +     
Sbjct: 691 DTLQNPKPGDD---DELFLVVLTRNGLVKKTPLAAFKGLTSRGLIAIKLGEGDAVTHARL 747

Query: 690 CTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           C   + ++L T  G   RF    S +R  + R + GVR ++L  GD ++ M +       
Sbjct: 748 CRASDSLILATAAGMVTRFAADDSELRSMS-RTTRGVRAMNLRDGDAIVKMDVA------ 800

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                              GD                               +L ++ +G
Sbjct: 801 ------------------GGD----------------------------HSHVLVLTAEG 814

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKR +  D R   R G G+ A    K  +   LV++ PV  ND++++V++ G ++R+  
Sbjct: 815 YGKRVALADLRSQKRGGMGVSAIKFKKKGD--DLVSICPVAPNDEVMVVTESGVIVRMDA 872

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894
             +   SR   GV++   AKD+ +V +
Sbjct: 873 ASVTAQSRTATGVLVQKAAKDDALVDL 899


>gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 722

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 310/772 (40%), Positives = 461/772 (59%), Gaps = 86/772 (11%)

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGM
Sbjct: 1   AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRG
Sbjct: 61  ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR 
Sbjct: 121 SITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 180

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++
Sbjct: 181 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 240

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N   
Sbjct: 241 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN--- 296

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +
Sbjct: 297 ----------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 334

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
              IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T++  
Sbjct: 335 LKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKR 394

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + 
Sbjct: 395 GYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYE 454

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F
Sbjct: 455 VPEYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDNYLFFTTKHGVVKRTTLSQF 511

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +I +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV  GR + GVR
Sbjct: 512 AKIRQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVR 570

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+VI M +                                  L++D  V    
Sbjct: 571 GIRLREGDEVIGMEV----------------------------------LEDDEKV---- 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                          L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+ 
Sbjct: 593 ---------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMK 635

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V   + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 636 TVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 687


>gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
 gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
          Length = 810

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 302/827 (36%), Positives = 485/827 (58%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ + A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS++I
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVII 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V++H  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSK-ISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +GI+
Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   +    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALC---VNSHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1]
 gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1]
          Length = 810

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 302/827 (36%), Positives = 486/827 (58%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQ++SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + D+  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVL----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    + +EL  L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +L+L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELLNLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD ++ +        +++ ++  Y +R+  M  +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLLVKVLAVRENPYLLIVSENGYGKRLN-MSKISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +GI+
Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   V    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
          Length = 786

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 320/879 (36%), Positives = 497/879 (56%), Gaps = 101/879 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I++E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  N+ Y K ARI GE
Sbjct: 7   ISEELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVGE 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+YDAL RMAQD+ +R  L++GQGNFGS+DGD PAA RYTE RL K A 
Sbjct: 67  VLGKYHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIAE 126

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+GK+TVDF PN+D + +EPVVL ++ PN+L+NG  GIAVGMATN+P HNL EV +
Sbjct: 127 EMLADIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVCE 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A I NP+I ++ LM+ ++GPDFPTG VI+G  GIK AY TGRG I +RG   +EK +
Sbjct: 187 GIIAYIQNPEISVEELMKYVKGPDFPTGGVIVGVDGIKEAYLTGRGKITVRGKVEVEKNA 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
                I++ E+PY VNKA ++E IAEL ++ RI +I  +RDESDR+G RVVIELK G++ 
Sbjct: 247 -----IIIREVPYMVNKAKLVESIAELAKD-RIDEIRTIRDESDREGIRVVIELKSGSNP 300

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + ++ +LY Y++LQ+ F +  +AL   +P    L  ++  FV  R E++ RRT Y L KA
Sbjct: 301 ETVIKKLYAYSNLQTTFGIINLALVDNEPRILNLKELIALFVDHRREIIRRRTTYDLEKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++R H++ GL + V ++D  + +I+ S +P  A+ +L++                     
Sbjct: 361 QERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIE--------------------- 399

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                T  LSE Q  A+L++RL +LT +  D +  E  SL  +I E   IL+S  ++  I
Sbjct: 400 -----TYSLSEKQADAVLQMRLQKLTAMEIDALLKEYESLKEKIAEYESILASPEKIDAI 454

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I  E+  ++++    RRT I+  + ++   D I  E+  V ++  GY KR+ L  +R Q 
Sbjct: 455 IADEVREIREKYGDERRTEIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQS 514

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG G  G  +   D +    I ++   +L F++ G  +    + +P     ARG  L  
Sbjct: 515 RGGVGVIGASVSPGDEIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKR 574

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           ++ L  GE++ + +   +    +N    V  +  G +++  L +F    R+G  A    S
Sbjct: 575 LIRLENGEKVVSALGVKD----FNGKIAVILSPDGYIKKVPLIEFENAKRAGVKA----S 626

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             EI  VE   + + I + T  G  VR   + +  + GRN+ GV  + L  GD       
Sbjct: 627 AGEIQQVE-LLEGDSIFIATANGNVVRLRETDVPEY-GRNAKGVIAVRLRDGD------- 677

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                     RI +M                       S+ EG              +++
Sbjct: 678 ----------RIAWM-----------------------SASEG--------------EYL 690

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L ++E+G+GKR    +FR   R   G+      +I+E    +A     + +++ ++S+ G
Sbjct: 691 LMLTERGYGKRCDVNEFRFIGRGSMGMIGY---RISEKTGKLAFISACNGEEVFIMSEDG 747

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             IR+  + I +  R + GVV+    K  + V+++++R+
Sbjct: 748 YCIRIDSSTIPVQGRYSSGVVV--ARKGVKRVALKKVRK 784


>gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 817

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 316/874 (36%), Positives = 485/874 (55%), Gaps = 90/874 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG+A
Sbjct: 21  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRKSAKTVGDVMGNYHPHGDA 80

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +  +LI+G GN+GS D DP AA RYTE RL + A  LL D+ K TV
Sbjct: 81  SIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEARLSEIAMELLRDIEKRTV 140

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL +R+PN+LVNG  GI+ G AT IPTHNL EV+D CVA++D P++
Sbjct: 141 LFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTHNLREVIDACVAMMDQPEM 200

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            ++ LM II+GPDFPTG +I+G  GIK+AY +G+G I +R  + IE   G R+QI+VTEI
Sbjct: 201 TVEQLMGIIKGPDFPTGGIIMGEEGIKDAYTSGKGRIYVRAKTSIESVRGGRQQIIVTEI 260

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  I  +  +K++  I+++RDES R G R+V++LK+ A A  IL  L + T
Sbjct: 261 PYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVDLKKDADAQGILAYLLKKT 320

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P++  +  +L+A++  +++VV+ RT+Y L KA DRAHVL GL 
Sbjct: 321 DLQVTYNFNMVAIVNKTPKQLGIREMLQAYIDHQKDVVIHRTQYDLEKAEDRAHVLEGLV 380

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDE++  I+ S N + A+  L+++                             +E
Sbjct: 381 KALNILDEIIETIKASKNRQDAQNNLVEK--------------------------YAFTE 414

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AIL L+L RLT L    +  ELN +  +I     IL S  +L  +IK+E++ ++D+
Sbjct: 415 RQADAILTLQLYRLTNLEVTSLEKELNDIMKKITHLCSILESPKKLANVIKKEMIEIRDK 474

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I   +  L +  E  +  ED++VT+S  GY+KRV +  Y   R GG+  +  
Sbjct: 475 YGIDRRSEIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRVSILSY--TRSGGELHT-T 531

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            +++ DFV  L  V+T  S+L F++ G  +   V ++P    +  G A++N++ +++ +R
Sbjct: 532 GLKEGDFVRHLLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDR 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I  ++P    E S  +L  VF TK G V+R +L +++    +  +A K+   DE++ VE 
Sbjct: 592 IVNVIPVKNFEESGKSL--VFVTKKGQVKRTELKEYMTKRSTAVVACKVGDGDEVIQVEV 649

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                D+LL TK G  +RF    +    GR + GVRGI L  GD+VIS        A++ 
Sbjct: 650 SESNKDLLLVTKQGMSIRFREDEVNPM-GRAAGGVRGIQLKDGDEVIS--------AEW- 699

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                          I GD  E                            +L +S++G+ 
Sbjct: 700 ---------------IFGDEGE----------------------------LLVISDRGYA 716

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLIRV 865
           KRT  +D+ +  R GKGI   +  +   + +    L+A F V  +  I    + G  +  
Sbjct: 717 KRTLVFDYPLQARGGKGILTFEFKEGKRVRSNGTELIASFLVKMDYDITAYLNNGEQVIF 776

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              +  +  R   G V+    + + +  ++R+ E
Sbjct: 777 STEKAPLDDRKATGKVVIPVGRTDSITHIQRMPE 810


>gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 808

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 322/888 (36%), Positives = 481/888 (54%), Gaps = 91/888 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ IT  S+ + +  SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+  +K Y 
Sbjct: 5   EENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYS 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+ MGKYHPHG+++IYDA  RMAQ W+ R  LI+GQGNFGS+DGD  AA RYTE
Sbjct: 65  KSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+   +  +  D+ KD + F+PNYD   +EP+VL + +PN+LVNGG GIAVGMA+NIP 
Sbjct: 125 MRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EVV   +  IDNP + L+ LME ++GPDFPTG +I+G  G   AY +GRG + +RG
Sbjct: 185 HNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMRG 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     +  IV+TEIP+QV+K+ +  KI       +I  I+++RDESDR+G R+V+
Sbjct: 245 KAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           E K+ A    IL  LY+YT LQ  F  +N+V      P    L  I  +++  R EVV+R
Sbjct: 305 ECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREVVLR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S  P  A+  L+ R           
Sbjct: 365 RTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SEVQ +AIL+++L  LT L  D IR E   +   I E   IL
Sbjct: 414 ---------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRED--MVVTVSHLGYV 548
           +  +++  IIK EL  + D+    RRT I+ E + D  D       +  M V ++  G++
Sbjct: 459 ADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++P    R+Q            +D D + +    ++  ++ FF+  G  Y  K   +  
Sbjct: 519 KQIPTPTRRSQINA----IAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVAE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+A+ N+  L + ERI  ++   E++      Y VF TK G V R+ + DF  +
Sbjct: 575 AGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQ---YFVFVTKDGQVMRSPVKDF--L 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N     AM L  +DEI+ V     E ++ L +  GQ +RF  + +    GR S GV+G++
Sbjct: 630 NARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPM-GRKSRGVKGMT 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  A+++   AD +                +GD                    
Sbjct: 689 LNEGDYVVD-ALLIQPGADGE----------------TGD-------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGALVAVFP 846
                      ++TV+E+G+ KRTS  +++   R+G+GI     D  K   + +L+ V P
Sbjct: 712 -----------LITVTEQGYVKRTSLEEYKPQGRAGRGIAIAKIDAEKTGYLVSLIQVGP 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             D   + ++   G +  V    ++  SR   G  + +   ++ +V V
Sbjct: 761 KEDK-LLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807


>gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi]
 gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi]
          Length = 810

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 304/827 (36%), Positives = 483/827 (58%), Gaps = 47/827 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+    R  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ V+ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNVIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI    E     ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTIKNSKE---FTDDSYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L +GD  + +        +++ ++  Y +R+   K +S  +R  +G T    S K   SV
Sbjct: 695 LKEGDLFVKVLAIRENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAGSV 753

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              I+     E       IL VS++    RT +       +  +GI+
Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E+   +    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALC---VNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + +VS++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMVSNEGKLYLINAYEIKDSSRASKG 585


>gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228]
          Length = 794

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 313/885 (35%), Positives = 495/885 (55%), Gaps = 102/885 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRILF   ++G+  +K + K A
Sbjct: 5   IYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAHKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+YDA+ RMAQD++ R  LI+GQGNFGS+DGD  AA RYTE +L
Sbjct: 65  RLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYTETKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL ++ + TV+F  N+DGS QEP VL ++ PN+LVNG  GIAVGM+T+IP HNL
Sbjct: 125 TEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           GEV+D  V ++D P+  L+ +++  + GPDFPTGA I+G  GIK AY +G+G I +R  S
Sbjct: 185 GEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASIIGNDGIKAAYQSGKGKITLRAKS 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK    +  +++TEIPYQVNK+ ++E+IAELV + +I  ++DLRDESD++G R+VIEL
Sbjct: 245 KIEKKKRHK-NLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIRIVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K  A  ++ LN+LY+YT+LQ+ F +N++A+N  KP    L+ IL  F+ FR+E++   +K
Sbjct: 304 KANADPELTLNRLYKYTNLQNNFRINLLAINDKKPVVMGLLEILNHFLDFRKEIIKNHSK 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +R H+L GL  A+  LD V+ +IR S     A++E   +      I       
Sbjct: 364 YNLTKAENRYHILEGLKKAIDQLDIVIDVIRNS----EAKKEAKAKLVKKLKI------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q ++ILE++L RL G+  + +  E   L  +IK   +IL++ 
Sbjct: 413 ---------------SERQAQSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNILNNE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  +++ EL  +K +   PRRT I+  +   ++   D I  +  ++++S+ G +KR  
Sbjct: 458 EELKSVLRAELKEIKKKFSDPRRTDIIADDSKAEITKNDLIKEKKAIISLSYRGIIKRN- 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y+  R              D++      S+   +LFFS+ G VY  +V  +      
Sbjct: 517 -DEYKNLRTA----------KNDYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEHHGL 565

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A G+ L   L +   E I  +    ++++   N Y  F T++G ++R ++ ++ + N S 
Sbjct: 566 ATGENLSKYLQIPINESIIDLNILSKNKAKTKNKYYTFVTENGLIKRTEVDEY-RTNYSH 624

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+KLD  D++++VE   + +D+++ +K G  +RF  S+     GRN++G R I+L K 
Sbjct: 625 IRAIKLD-EDQLVNVEKTDEASDLIVISKKGYLIRFKGSSFST-TGRNTLGSRAINLIKN 682

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+                                          S+ E N        
Sbjct: 683 DKVLYF----------------------------------------STFENN-------- 694

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                 FI+++SE G   +    +F    R+GKG R       N+   L         D+
Sbjct: 695 -----SFIISISENGRANKIKLSEFETQKRNGKGNRIFS----NKSYKLAGAVKAKAGDK 745

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           I++ +  G +  + V++I   S A     I      E++ +V++I
Sbjct: 746 ILIAAKNGEIYEIEVDQIPETSPAGNMYQITKELDFEKITTVKKI 790


>gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 726

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 294/686 (42%), Positives = 416/686 (60%), Gaps = 39/686 (5%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   D
Sbjct: 1   GFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIA
Sbjct: 61  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKN 239
           VGMATNIP HNLGE+ +     +DN + D    L A+ME ++GPDFPT  +I+G  GI +
Sbjct: 121 VGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIAD 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++
Sbjct: 181 AYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNI 240

Query: 300 RDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L  ++
Sbjct: 241 EDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLI 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR    
Sbjct: 301 RHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR---- 356

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                    + LI+L+D             + E+Q +AIL+++L RL  L R  I ++L 
Sbjct: 357 ---------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLA 394

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I RED+
Sbjct: 395 KIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDV 454

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                           +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G V
Sbjct: 455 XXXXXXXXXXXXXXXXLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRV 514

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + LP  S  ARG+ + N+L+    ERI  ++      S  +  Y+V AT++G V+
Sbjct: 515 YRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNGLVK 571

Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRV 715
           + KL+DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A+R 
Sbjct: 572 KTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRP 630

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIV 741
             GR + GV+G+     D ++S+ +V
Sbjct: 631 M-GRATSGVQGMRFNADDYLLSLNVV 655


>gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
          Length = 804

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 302/881 (34%), Positives = 499/881 (56%), Gaps = 97/881 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +E+++SYL YA++VI+GRAIPD+RDGLKPV RRI++ M +MG+ ++K + KCAR+ GE
Sbjct: 8   VEEEVKDSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKPHKKCARVVGE 67

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GK+HPHG+ A+YDAL RMAQD++ R  LI+G GNFGS+DGD  AA RYTE RL K ++
Sbjct: 68  VLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRYTEARLAKISN 127

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+ ++G + V  + N+DGS +EP VL A++P +L NG  GIAVGMAT+IP HNLGE++D
Sbjct: 128 TLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSIPPHNLGELID 187

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + ++ NP +  + L++++ GPDFPTG +I+G+ GIK  + TG+G I++RG   IE  S
Sbjct: 188 ALLLILKNPQVSEEELLKVLTGPDFPTGGIIVGKNGIKEYFLTGKGKIILRGRHKIEMGS 247

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
               ++V++EIPY VNKA ++EKI +L++EKR+  ++++RDES R+G R+V++LK+GA++
Sbjct: 248 -KTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIRIVLDLKKGANS 306

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + I+ +LY++T++Q  F V M++L    P+   +  +L  F+ FR+++  +R + +L   
Sbjct: 307 EKIVKKLYKHTTMQITFGVIMLSLVAGVPKVLPVKDVLLHFLTFRKDIQRKRLEKILEDL 366

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + R  +L  L+ A+  +D+V+ II+ S NP  A++ L +                     
Sbjct: 367 KKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCE--------------------- 405

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + +SE   + IL+LRL RLT L R+ I  +L    +EIKE    L+   + L I
Sbjct: 406 -----FLQISEEGAQGILDLRLQRLTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEI 460

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRVPLSVYRAQ 559
           ++ EL+ +K      RRT I     + +  +  + E +++VT+S LG++KR+   V+  Q
Sbjct: 461 LENELVEIKSNFADKRRTEISLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKKDVFERQ 520

Query: 560 RRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            +GGKG  G+      +D +    ++S    +LF SS G  Y    + +P  S  +RG  
Sbjct: 521 NKGGKGIDGIQKSSAIQDRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTG 580

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NIL L++ E+IT ++   E+E   +   ++ AT  G +++ KL + +   R+G IA+K
Sbjct: 581 IANILPLSEDEKITFMVQIKEEEIKKD---IILATSMGYLKKIKLENIVSKRRNGVIAIK 637

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  + ++      +E   LL +  G      +  +R   G NS GV G+ L+K D+++ 
Sbjct: 638 LNDSESVVGACMVCEEK-FLLYSSNGFATLANLKDLRNM-GNNSHGVIGMRLSKDDKLLG 695

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +      D+ Y                                                 
Sbjct: 696 IV----PDSKY------------------------------------------------- 702

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
              + + + G GK+ SS +F    R  KG+R   VSK      L  +    +   +I+ +
Sbjct: 703 --FIVIDKNGNGKKVSSDNFTSHKRGTKGVR---VSK----NKLATILNYKEGMDLIIYT 753

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +KG +IR+ ++ ++  SR  KG+ +    K + V+    +R
Sbjct: 754 EKGKVIRIDIDSVKQLSRNAKGIKLQKLDKADSVLDATIVR 794



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + I+T+S+ GF KR     F   N+ GKGI     S   +     ++  +++ D+I+ +S
Sbjct: 498 EVIVTISKLGFIKRMKKDVFERQNKGGKGIDGIQKSSAIQDRIQTSIV-LSNKDRILFIS 556

Query: 858 DKG---TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            KG   TL+   + E    SR T    I   ++DE++  + +I+E EI
Sbjct: 557 SKGRAYTLLAFSIPEFSRTSRGTGIANILPLSEDEKITFMVQIKEEEI 604


>gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1]
 gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1]
          Length = 825

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 305/840 (36%), Positives = 491/840 (58%), Gaps = 56/840 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I  E++  +L Y+++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K A
Sbjct: 13  IKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITADKPHKKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YD++ RMAQD+S R  L++G GNFGS+DGD  AA RYTE RL
Sbjct: 73  RIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++F++ D+  +TV F  NYD S +EP  L   +PN+L NG  GIAVGMAT+IP HNL
Sbjct: 133 AKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAMGIAVGMATSIPPHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+    A IDN DI +D +++  I GPDFPTGA++     ++  Y TGRG++ IR   
Sbjct: 193 REVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIRMREGYKTGRGAVTIRAKV 252

Query: 255 HIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E+   DR  + ++TEIPYQ NKA ++E+IAELV+ K++  I+D+RDES+ +G R+VIE
Sbjct: 253 ALEEN--DRHARFIITEIPYQTNKAKLIERIAELVKTKQLEGISDIRDESNYEGIRIVIE 310

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+R ++ DV+L++LY++T+LQ+ +S+N+++L+   P    L  I+K +V F+  V+++R+
Sbjct: 311 LRRDSNPDVVLSKLYKFTNLQTTYSLNLLSLHNNIPVLLDLKSIIKHYVDFQINVIIKRS 370

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +  +K   R H+L  L  A+ N+D +V I+R SP    A+ +L +              
Sbjct: 371 IFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTE-------------- 416

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD---- 489
                   G D      E Q +AIL++RL RL GL R  I+ E+     +IKE +D    
Sbjct: 417 ------AFGFD------EEQNKAILDMRLQRLVGLERGKIQQEM----AQIKERIDYLTL 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++S  +    ++K +L  + ++    RRT  + EGL+D+EDE+ I     ++ +S  GY+
Sbjct: 461 LISDETEQNNVLKNQLSEIAEKFGDNRRTETIDEGLMDIEDEELIPDVKTMILLSDEGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           +RV    +R Q+RGG+G S V   +ED +    +      VLFF++ G V++ K + +  
Sbjct: 521 RRVDPEEFRVQKRGGRGVS-VNSSNEDPIVIATMGKMRDWVLFFTNSGKVFRTKAYNIRQ 579

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            S  ARG  ++N L+ L  G++IT I+P    +   N  Y+ F T+ G +++  +S F  
Sbjct: 580 YSRTARGLPIVNFLNGLTAGDKITAILPLRNVKEKMN--YLTFITEKGMIKKTDISLFDN 637

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+ L   D++++V   T E+ I +  K G+ +R   + +R  + R + GV+ I
Sbjct: 638 INKNGKIAINLKEDDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLS-RTASGVKAI 696

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+             E I  +    + ++  +   E   S +N   ++     
Sbjct: 697 KLDENDVVVGAVTSFGI-----ENITTISSKGSFKK--TNIDEYRISGRNGKGIKVMNLN 749

Query: 788 ERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           E+  + K      +   +  +S  G   +T + D  +  R+  G+R   +S+ N+I A++
Sbjct: 750 EKTGDFKSIIAARETDLVCIISTDGNLIKTKASDIPVLGRAAAGVRGIRLSEGNKIQAVM 809


>gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 501

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/494 (53%), Positives = 351/494 (71%), Gaps = 9/494 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487

Query: 487 CLDILSSRSRLLGI 500
            L IL S  RL+ +
Sbjct: 488 LLHILGSADRLMEV 501


>gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
 gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
          Length = 744

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 317/809 (39%), Positives = 455/809 (56%), Gaps = 89/809 (11%)

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           R+AQ WSLR  L++G GNFGS   DPPAA RYTE RL   A  +L D+ +DTVDF PNYD
Sbjct: 2   RLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNYD 61

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LD 214
           G  QEP +L +R+PN+LVNG GGIAVGMATNIP HNL EV DG    + +PD      L+
Sbjct: 62  GRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELLE 121

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           AL+E+I+GPDFPT  +I+GR GI++AY TGRGSI +R V  +E+  G R Q+VVTE+PYQ
Sbjct: 122 ALLELIKGPDFPTAGLIVGRQGIEDAYRTGRGSIRMRAVVQVEENKG-RTQLVVTELPYQ 180

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           VN   + EKIAELVR+ RI  I+D+RDE S R G R++I+LKR A A V+LN LY++T L
Sbjct: 181 VNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHTQL 240

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q  F VNM+A+    P    L  +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA
Sbjct: 241 QDTFGVNMLAIVDGVPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGLLIA 300

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LDEV+ +IR + + + AR +LM R                            LSE+Q
Sbjct: 301 LDHLDEVINLIRNAESADAARGQLMDR--------------------------FSLSEIQ 334

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             AIL+++L RL  L R  I +E   L  +I E   IL+S +R   II +EL  + D   
Sbjct: 335 AVAILDMQLRRLAALERQKIIDEAAELRAKIAELEAILASPARQREIIGEELTEIVDRFG 394

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRTR+V    DM  ED I RED+VVTV+  GY KR    +YR+QRRGGKG  G  +R+
Sbjct: 395 DERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALRE 454

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           +D V   F+ +TH  +LFF++ G VY+ K   LP  +  A+G+ + NIL+  Q ERI  +
Sbjct: 455 DDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARTAKGQHVANILAFGQDERIAEV 514

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M   + +++    Y+V AT+ G  ++  L++F      G +A+ L   DE+++    +  
Sbjct: 515 MAIKDYQAAP---YLVLATRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAG 571

Query: 694 NDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +D+LL ++  Q +RF     ++   GR + GV G+     D++++M +V           
Sbjct: 572 DDLLLVSRQAQSIRFHADDEQLRPMGRATSGVIGMRFDSDDELLAMEVV----------- 620

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                        E N+               L  +  G+ K+T
Sbjct: 621 -------------------------PPESEANL---------------LVATSGGYAKQT 640

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           S  ++ +  R GKG+    +  ++  G LV    V+ +DQ+  ++  G ++R    ++R 
Sbjct: 641 SLGEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVSPDDQLYAITSNGGVLRTVARDVRR 698

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901
           A R T GV +       +VV V R  ++E
Sbjct: 699 AQRQTMGVRLIDLEAGVQVVGVARNADAE 727


>gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
 gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
          Length = 789

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 313/873 (35%), Positives = 481/873 (55%), Gaps = 96/873 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++NSYL YA++VI+ RAIPD+RDGLKPV RRI++ M ++ +  +K Y K ARI GE
Sbjct: 5   IEEEIKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVGE 64

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            MGKYHPHG++AIYDALARM+QD+SLR  L++GQGNFGS+DGD PAA RYTE RL + A 
Sbjct: 65  TMGKYHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIAE 124

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            ++ D+ K+TV F PN+DGS  EPV   ++ P +L+NG  GIAVGMATN+  HNL EV D
Sbjct: 125 EMIRDIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVCD 184

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                ID+ D  L  L++ I+GPDFP G +I     + + Y TG G ++ RG        
Sbjct: 185 AIKYKIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKDMIDIYKTGHGKVICRG-----SIE 239

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            + ++I++  +PY +NKA  ++ +A LV   +I +I+D++DESDR G R+VI++K     
Sbjct: 240 AEDKRIIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHDRI 299

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           D+++NQLY  T L++  SV  + L    P    L  ++K F+ FR +V+ +R++Y L K 
Sbjct: 300 DLVVNQLYEKTQLETSISVTNLVLLDNVPVVMNLEDLIKNFIGFRLDVIKKRSEYDLKKL 359

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +R H+L GL IA+ N+D V++IIR S +  +AR  L++                     
Sbjct: 360 NERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKE-------------------- 399

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + L+E Q  AIL++RL RLT L    ++ E++ +  +I+   D++++ +    +
Sbjct: 400 ------LSLTEAQANAILDMRLQRLTALEISKLKEEIDEINKKIEYLSDVVNNENTRKNV 453

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +K EL  +K +    RRT ++EG +   D ED I  E+ V+ +S  G +KRV L  Y++Q
Sbjct: 454 LKAELDEIKKQYGDRRRTEVIEGEISRRDEEDLIPNEESVIILSEKGLLKRVSLDEYKSQ 513

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG+G      RD D V  +     H ++ FF++ G V KEK +R+     +A G +  
Sbjct: 514 RRGGRGII-TNTRDNDSVKSVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRDRKALGVSGN 572

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
             L LN  E I  I+  PE+        ++  TK+G +++  +S+ + + +SG   + L 
Sbjct: 573 KFLKLNDNEIIRQIIKSPENLEDL----LIIVTKNGFIKKTNISEILDMRKSGIKIINLA 628

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           + DE++SV   +  + I +    G+   F +S       R+S GV+ + L  G  VIS  
Sbjct: 629 NNDEVVSVSEISGSSKIFVAASNGKAAVF-LSDEVPLTSRSSRGVKSMKL-NGSYVISAF 686

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            V                                  K+D +                   
Sbjct: 687 PV----------------------------------KDDDT------------------- 693

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQIILVSD 858
           IL+++E G GKRT + +F   +R   G+    + K NE  G LV   PV D+D+II+V+ 
Sbjct: 694 ILSITENGLGKRTRATEFPEHHRGSSGVY---LFKENEKTGKLVMALPVKDDDEIIIVTK 750

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               IR+  ++I I SR   GV +    +++ +
Sbjct: 751 NDQTIRIKSSDISILSRFASGVRLVGLTENDSI 783


>gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 718

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 292/682 (42%), Positives = 413/682 (60%), Gaps = 39/682 (5%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA
Sbjct: 2   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMA
Sbjct: 62  MRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMA 121

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNLGE+ +     +DN + D    L A+ME ++GPDFPT  +I+G  GI +AY T
Sbjct: 122 TNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIADAYKT 181

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IA+ VR+ ++  I+++ D+ 
Sbjct: 182 GRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIEDQS 241

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L  +++ +V
Sbjct: 242 SDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRHYV 301

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR        
Sbjct: 302 DHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR-------- 353

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                + LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  
Sbjct: 354 -----QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEA 395

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I RED     
Sbjct: 396 EIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDXXXXX 455

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
                        YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 456 XXXXXXXXXXXXXYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAK 515

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + LP  S  ARG+ + N+L+    ERI  ++      S  +  Y+V AT++G V++ KL
Sbjct: 516 AYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNGLVKKTKL 572

Query: 663 SDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719
           +DF   NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A+R   GR
Sbjct: 573 TDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM-GR 630

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
            + GV+G+     D ++S+ +V
Sbjct: 631 ATSGVQGMRFNADDYLLSLNVV 652


>gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 662

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/680 (40%), Positives = 424/680 (62%), Gaps = 31/680 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVE 688
              G I +KL+ +D + S E
Sbjct: 636 KSRGVIVIKLNDKDFVTSAE 655



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   V    VN +D
Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585


>gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 689

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 295/747 (39%), Positives = 440/747 (58%), Gaps = 85/747 (11%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+D
Sbjct: 5   KNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMD 64

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  + IE T   RE+IV
Sbjct: 65  NPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIV 124

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VILN L
Sbjct: 125 VTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNL 184

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT++   KA  RAH+L
Sbjct: 185 FKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHIL 244

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA+ ++DEV+RIIR S     A+ ELM +                           
Sbjct: 245 EGLLIALDHIDEVIRIIRASETDAEAQAELMSK--------------------------F 278

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL+   R+  IIK EL  
Sbjct: 279 KLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDE 338

Query: 508 VKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
           VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG+G 
Sbjct: 339 VKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 398

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     A+G  ++N+L L++
Sbjct: 399 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 458

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE+++
Sbjct: 459 DESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELIN 516

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +GD V+  +++     
Sbjct: 517 VLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLI----T 571

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D DE                                                 +L ++EK
Sbjct: 572 DQDE-------------------------------------------------VLVITEK 582

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT + ++    R GKG++   +++ N  G L  +  V  ++ +++++D G +IR  
Sbjct: 583 GYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTN 640

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVS 893
           +  I    RAT GV +    +D ++V+
Sbjct: 641 LANISQTGRATMGVKVMRLDQDAQIVT 667



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 371 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 427

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 428 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 476


>gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
 gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 849

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 300/751 (39%), Positives = 436/751 (58%), Gaps = 67/751 (8%)

Query: 19  VSITD---EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           V +TD   EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 23  VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RMAQD+S R  L+ G GNFGSVD DPPAA RYTECRL
Sbjct: 83  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            + +H  LL  + +  VDF PN+DGS  EP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+ID PD+  + L+  I GPDFPTG  I+   GI+ AY TGRGSI +RGV+
Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVA 262

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E+         R  ++++E PYQVNKAA LEK+AELV + R+  IADLRDESDR G R
Sbjct: 263 RFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMR 322

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELKR A+   +L QLY+ T LQS F V ++AL   KP++ +L  IL+ F+ FRE  +
Sbjct: 323 VVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATL 382

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  +  L + + +A  + G+ +A+A+L+ V+ ++R +P+  TA+ +L  R    S    
Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQ--- 439

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                                  Q   IL + L RLT L R+ +  E   L   I E   
Sbjct: 440 -----------------------QAETILAMPLRRLTTLERERLYQEQAELQARIAELQG 476

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-----ED--MVVTV 542
           +L  R +LL  +K+EL  +K     PRRT+I+    ++E E   +      ED   ++ +
Sbjct: 477 LLQDRRKLLNYLKKELRHLKKTFADPRRTQILSA-SELEAEAAQIPGGEAGEDSRFLLQL 535

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +  GYV+R+PL        G + RS    R+  ED +  L  V+   ++L  ++ G  + 
Sbjct: 536 TRKGYVRRLPLP-------GPRSRSNPAQRELGEDTLVSLECVTPEQAILVLTASGRAFT 588

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-------ESSWNNLYVVFATK 653
             +  +P+ +  +RG  L+ +L   +      +  FP D       E S     +V  ++
Sbjct: 589 VPIEGIPLSTGSSRGVPLVTLLPNPE----PIVAAFPLDPVRVSGAEHSPGEASLVVLSR 644

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPI 710
            G ++R  L++ + +++ G   +KL   DE+          Q   ++L T  G+ +R   
Sbjct: 645 QGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLDA 704

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             I +  GR ++G   + L + +Q++ MA++
Sbjct: 705 EQIPLM-GRAAMGSPALRLGRTEQIVGMALL 734


>gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 660

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 299/737 (40%), Positives = 437/737 (59%), Gaps = 87/737 (11%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP HNLGE+++  + +ID
Sbjct: 2   KDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLID 61

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
            P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR   HIE T   +E IV
Sbjct: 62  TPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKHHIE-TKAKKEIIV 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           + E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVVIELK+ A ++++LN L
Sbjct: 121 IDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAMSEIVLNNL 180

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++RRT + L KA+ RAH+L
Sbjct: 181 YKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHIL 240

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IAV N+DEVVRIIR S N   A+  L  R                           
Sbjct: 241 EGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR--------------------------F 274

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL S  +L  II++EL  
Sbjct: 275 DLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTE 334

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +K++    R+T I +   +++ ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+ 
Sbjct: 335 IKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKV 394

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS  A+GKA++N+++L   
Sbjct: 395 AVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPD 454

Query: 628 ERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           E+I  I+P P+ DES      +VF T++G ++R  L++F  I  +G  A+ LD  DEI++
Sbjct: 455 EKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 510

Query: 687 VETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +    E   I++ T LGQC+RF +   R   GR++ GVRGI        I    V+ AD
Sbjct: 511 AKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK-----IDTDFVVDAD 564

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                  IS E        +Q ILTVSE
Sbjct: 565 V--------------------------------------ISSE--------DQEILTVSE 578

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D   ++L++  G +IRV
Sbjct: 579 KGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDDTQDLMLLTSIGKMIRV 636

Query: 866 PVNEIRIASRATKGVVI 882
            +N IR A R T GV+I
Sbjct: 637 DMNTIRKAGRNTSGVII 653


>gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2]
 gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2]
          Length = 820

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 314/871 (36%), Positives = 473/871 (54%), Gaps = 94/871 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G    K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYD + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A  +L D+ K TV
Sbjct: 83  SIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMEMLRDIEKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D S +EPVVL +RYPN+LVNG  GI+ G AT IPTH+L EV+D  +AV++ P I
Sbjct: 143 LFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVIDATIAVMEKPQI 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +L+ +M  I+GPDFPTG +I+G  GIK+AY TG+G I IR  + I+   G ++Q+V+TEI
Sbjct: 203 ELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRSKTEIQSLRGGKQQLVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EK++  IA++RDES R G R+V+ELK+ A A+ IL  L + T
Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEADAEGILAYLLKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P +  L  IL+A++A + EVV  R K+ L KA DRAHVL GL 
Sbjct: 323 DLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTNRIKFELEKAEDRAHVLEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LS 450
            A+  LDEV+  I+ S N + A+  L    W                        M+  S
Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW------------------------MFGFS 415

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q  +IL L+L RLT L    +  EL  +  +I +   IL S  +L+ +I++ELL +++
Sbjct: 416 ERQADSILTLQLYRLTNLEITTLEKELADIQKKITQYRSILDSDRKLISLIRKELLEIRE 475

Query: 511 ELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +    RR+ I   VE +  +  E  +  ED+++T+S  GYVKR  +  +    R G  RS
Sbjct: 476 KYGIDRRSEIQGEVEEI-KVNLEVMVAAEDVLLTLSKDGYVKRTSMLSFT---RSGGERS 531

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              +++ D++T    V+T   +L F+  G  +   V ++P    +  G  ++N++SL + 
Sbjct: 532 NSGVKEGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKE 591

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           +RI +++P    E    +L  VF TK G V+R +L+++     S   A K+   DEILSV
Sbjct: 592 DRIVSVIPIKNMEEIGKSL--VFVTKKGQVKRTELTEYATKRSSAVAACKVAGDDEILSV 649

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  DI+L T+ G  +RF    +    GR S GV+GI LA+GD++++    L  + D
Sbjct: 650 TLSDNSKDIMLITRAGMSIRFKEQEVNAM-GRVSAGVKGIQLAEGDEIVA---ALWVEED 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             E                                                 +L ++E G
Sbjct: 706 EGE-------------------------------------------------VLVLTESG 716

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLI 863
           +GKRT   D+    R GKGI   +  +   + +    +VA F   +  Q+ +++ +G  +
Sbjct: 717 YGKRTLLLDYPSQGRGGKGISTFEFKEGKRVRSNGTRIVAAFYCREAVQLFVITSEGQTM 776

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +  +  R   G ++    K + +V+V
Sbjct: 777 SFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807



 Score = 44.7 bits (104), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 22/170 (12%)

Query: 746 ADYDERIC-YMKHMSAQRRLISGDTEEITSLKND------SSVEGNISEERC--QELKLK 796
           AD  ++I  Y   + + R+LIS   +E+  ++        S ++G + E +   + +   
Sbjct: 443 ADIQKKITQYRSILDSDRKLISLIRKELLEIREKYGIDRRSEIQGEVEEIKVNLEVMVAA 502

Query: 797 EQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           E  +LT+S+ G+ KRTS   F  S   RS  G++  D         +     VN  D ++
Sbjct: 503 EDVLLTLSKDGYVKRTSMLSFTRSGGERSNSGVKEGDY--------ITQFLDVNTLDVLL 554

Query: 855 LVSDKGTLIRVPVNEI---RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + + +G    +PV+++   +     T  V + S AK++R+VSV  I+  E
Sbjct: 555 VFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKEDRIVSVIPIKNME 604


>gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1]
 gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1]
          Length = 792

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 305/872 (34%), Positives = 479/872 (54%), Gaps = 92/872 (10%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ SYL YA++VI+ RAIPD RDGLKPV RR+L+ M ++ V  +K Y KCARI GE MG
Sbjct: 9   EIKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCARIVGETMG 68

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL + A  ++
Sbjct: 69  KYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQFAEDMM 128

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+ ++TV+FR N+DG+  EP  L ++ PN+LVNG  GIAVGMATN+  HNL E+ D   
Sbjct: 129 EDIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNLSEISDAIK 188

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             + N    +D L++I++GPDFP G ++     +  AY TG+G ++++G    E  + + 
Sbjct: 189 YELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKDLIEAYRTGKGKVIVQG----EVDTSEE 244

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            +I++  +PY VNK+ ++E IA L +   I DI D++DESDR G R+VI ++      ++
Sbjct: 245 RRIIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVRDEDLKPLV 304

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           +NQLY +T L++   +  + L G +P+   L  +L  F+  R +V+++R++Y L K  +R
Sbjct: 305 MNQLYEHTDLETTIGIINLVLVGNQPKLLNLKQLLDQFIDHRLDVILKRSRYRLEKKNER 364

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             VL G+  A+ N+D VV I+R S + + A  E +++++N                    
Sbjct: 365 HDVLSGVLTAIDNIDRVVEIVRGSDDVQKA-SETLKKTFN-------------------- 403

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L++ Q +AILE+RL RL  + R+ + NEL S+  EI +  +I+ S  + + +++ 
Sbjct: 404 -----LNDRQVKAILEMRLQRLVHMERESVVNELKSIEKEIADLKEIIESEQKRIEVLEG 458

Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E+  +K      RRT+I  + + +   ED I  E+ V+ +S+ G VKRVP+  YR+QRRG
Sbjct: 459 EIDEIKKRYGDKRRTKIKFKEIGERSTEDLIPNEESVIMLSYGGLVKRVPIDEYRSQRRG 518

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG     M+  D V  +    +H ++ FF+S G V+K K + +P  S  + G +    L
Sbjct: 519 GKG-VNTSMKISDTVKSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSLGVSAGAFL 577

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L Q ER+T +M  P D       ++V  T++G V++           SG   + LD  D
Sbjct: 578 KLQQNERVTEVMKAPADRGE----HLVLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDD 633

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++S  T   + ++ + +  G+   F  S +R   GR+S+GVR + L + D V++  +V 
Sbjct: 634 ELVSASTIDTDTNMFVLSSKGKGSVFNTSEVRE-TGRSSMGVRSMRLGEEDYVVTAFVVK 692

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                  + I  +      +R                    N+SE               
Sbjct: 693 EG-----QDILSISEKGFGKRT-------------------NLSE-------------FP 715

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V  +G G       +R + R+GK               +    PV ++D++I+VS     
Sbjct: 716 VHHRGSG---GVLVYRDTERTGK---------------ISQAIPVKEDDEVIIVSMNEKT 757

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           IR+  +EI   SR T GV +      +R+++V
Sbjct: 758 IRIKASEIPETSRVTSGVKLIDLEDGDRIMAV 789


>gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 819

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/759 (39%), Positives = 439/759 (57%), Gaps = 61/759 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ G+
Sbjct: 6   LQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGD 65

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTECRL + +H
Sbjct: 66  VLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELSH 125

Query: 141 -FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL+ + ++ VDF PN+DGS  EP VL AR P +L+NG  GIAVGMATNIP HNLGEVV
Sbjct: 126 TALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEVV 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-- 257
           DG +A+ID+PD+  + L+  I GPDFPTG  IL   GI+ AY TGRGSI +RGV+  E  
Sbjct: 186 DGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVARFEEI 245

Query: 258 ---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
              K    R  +V++E PYQVNKAA +EK+AEL  + RI  IADLRDESDR G RVV+EL
Sbjct: 246 QPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVVEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+   +L QLY+ T LQS F   ++AL   +P + +L  IL+ F+ FRE  + R  +
Sbjct: 306 KREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATLNRMFR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L + + +A  + G+ +A+A+L+ V+ ++R +P+  TA+ +L  R              
Sbjct: 366 AELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTR-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       +  +  Q   IL + L RLTGL R+ +  E   L   I+E   +LS R
Sbjct: 412 ------------LGCTPQQAETILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDR 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL-------GY 547
            +LL  +K+EL  +K     PRRT+I+    ++E E   +        +H        GY
Sbjct: 460 RKLLNYLKKELRHLKKTFGDPRRTQILSA-SELEAEVAQIPSGEETEETHFLLQFTRKGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           V+R+PL   R+       RS    R+  ED +  L  V+    +L  ++ G  +   +  
Sbjct: 519 VRRLPLPSRRS-------RSNPAQRELGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAG 571

Query: 606 LPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+ +  +RG  L+ +L   +    T T+ P P   S      +V  ++ G ++R  L++
Sbjct: 572 IPLSTGSSRGVPLVTLLPNPEPIVATFTLDPDPGKAS------LVVLSRQGRIKRLALAE 625

Query: 665 FIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            + + + G   +KL   DE+      +   Q   ++L T  G+ +R  +  I +  GR +
Sbjct: 626 LMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLM-GRAA 684

Query: 722 VGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMS 759
           +G   + L + ++++ MA+V          R+ Y+K +S
Sbjct: 685 MGSPALRLGRTERIVGMALVPSQGILVLASRLGYLKRLS 723


>gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 367

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/367 (68%), Positives = 303/367 (82%), Gaps = 1/367 (0%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +Q+ F  NMVALNG KPE+ TL+ +L+AFV FREEVV RRTK+LL KAR+RAHVLVGLAI
Sbjct: 1   MQTSFGCNMVALNGGKPEQLTLLDMLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLAI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           AVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE 
Sbjct: 61  AVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEE 120

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE 
Sbjct: 121 QARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEF 180

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
            TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  R
Sbjct: 181 GTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTR 240

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           DEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITT
Sbjct: 241 DEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLAPGERITT 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCT 691
           I+P PEDE+SW+NL V+F+T  G VRRNKLSDF+ +NR+GKIAMKL+   DEILSVETCT
Sbjct: 301 ILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLEEEGDEILSVETCT 360

Query: 692 QENDILL 698
           + +D+LL
Sbjct: 361 EHDDVLL 367


>gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 496

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/390 (65%), Positives = 301/390 (77%), Gaps = 1/390 (0%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           ++EKR+  I+DLRDESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG 
Sbjct: 1   MKEKRLEGISDLRDESDRDGMRIVVELKRDAIADVVLNQLYRYTPLQTSFGANMVALNGG 60

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +PE   L  +L+AF  FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR S
Sbjct: 61  RPELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTS 120

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
           P+P TAR  LM R W A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT 
Sbjct: 121 PDPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTA 180

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L RD+I +EL  L  EI + LDIL SR+R+  I+K EL  V++   TPR+T I++    +
Sbjct: 181 LXRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRKTEIIDSDFSV 240

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           EDED I REDMVVTVSH GYVKRVPLS YRAQ+RGGKGR+G+  RDEDFVT LF+ STHT
Sbjct: 241 EDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRLFVASTHT 300

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNL 646
            VLFFS  G  YKEKVWRLPI +P ARGKAL+NIL L N+GERI+TIMP PEDE+SW  L
Sbjct: 301 PVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPEDEASWETL 360

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            V+FAT  GNVRRNKLSDF  +NR+GKIAM
Sbjct: 361 DVMFATASGNVRRNKLSDFTTVNRNGKIAM 390


>gi|308069401|ref|YP_003871006.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
 gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
          Length = 820

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 314/871 (36%), Positives = 474/871 (54%), Gaps = 94/871 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYD + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A  +L D+ K TV
Sbjct: 83  SIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMEMLRDIEKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D S +EPVVL +RYPN+LVNG  GI+ G AT IPTH+L EV+D  +AV++ P+I
Sbjct: 143 LFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVIDASIAVMEKPEI 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +L+ +M  I+GPDFPTG +I+G  GIK+AY TG+G I IR  + I+   G ++Q+V+TEI
Sbjct: 203 ELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRSKTEIQSLRGGKQQLVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQ+ K+ ++  +  +  EK++  IA++RDES R G R+V+ELK+ A A+ IL  L + T
Sbjct: 263 PYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEADAEGILAYLLKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P +  L  IL+A++A + EVV  R +Y L KA DRAHVL GL 
Sbjct: 323 DLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTHRIQYELEKAEDRAHVLEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LS 450
            A+  LDEV+  I+ S N + A+  L    W                        M+  S
Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW------------------------MFGFS 415

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q  +IL L+L RLT L    +  EL  +  +I +   IL S  +L+ +I++ELL +++
Sbjct: 416 ERQADSILTLQLYRLTNLEITTLEKELGDIQKKIAQYRSILESDRKLISLIRKELLEIRE 475

Query: 511 ELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +    RR+ I   VE  + +  E  +  ED+++T+S  GYVKR  +  +    R G  RS
Sbjct: 476 KYGIDRRSDIQGEVEE-IKVNLEVMVGAEDVLLTLSKDGYVKRTSMLSF---TRSGGERS 531

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              +++ D+VT L  V+T   +L F+  G  +   V ++P    +  G  ++N++ L++ 
Sbjct: 532 SSGVKEGDYVTQLLDVNTLDILLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVIPLSKE 591

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           +RI +++P    E    +L  VF TK G V+R +L ++     S   A K+   DE+LSV
Sbjct: 592 DRIVSVIPLKNIEEIGKSL--VFVTKKGQVKRTELKEYATKRSSAVAACKVAGDDEVLSV 649

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  DI+L T+ G  +RF    +    GR S GV+GI LA+GD++I+    L  + D
Sbjct: 650 TLSEGTRDIMLITRAGMSIRFKEQEVNAM-GRVSAGVKGIQLAEGDEIIA---ALWVEED 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             E                                                 +L ++E G
Sbjct: 706 EGE-------------------------------------------------VLVLTESG 716

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLI 863
           +GKRT   D+    R GKGI   +  +   + +    +VA F   +  Q+  ++ +G  +
Sbjct: 717 YGKRTLLLDYPTQGRGGKGITTFEFKEGKRVRSNGTRIVAAFYCREAVQLFAITAEGQTM 776

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +  +  R   G ++    K + +V+V
Sbjct: 777 SFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807


>gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6]
 gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6]
          Length = 776

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 321/863 (37%), Positives = 487/863 (56%), Gaps = 108/863 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I+ E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+   K Y KCARI G+
Sbjct: 7   ISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVGD 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+AA+YDAL RMAQD+++R  LI+GQGNFGS+DGD PAA RYTE RL K A 
Sbjct: 67  VLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIAE 126

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDTVDF PN+D + +EP VL A+ PN+L+NG  GIAVGMATN+P HNL EV D
Sbjct: 127 EMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVCD 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +A + NPDI +  LM+ ++ PDFPTG VI+GR G+ +AY TG+G I +RG   IE  +
Sbjct: 187 AIIAYLQNPDITVRELMKYVKAPDFPTGGVIVGRKGLIDAYETGKGKITVRGRVEIENNT 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
                I++ EIPY VNKA ++EKIAEL+   ++ +   +RDESDR+G R+V+E++     
Sbjct: 247 -----IIIREIPYMVNKARLVEKIAELINSGKL-EAKTVRDESDREGIRIVVEVRE--DI 298

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +  L +LY YT+LQ+ F +  +AL   +P   +L  +++ +V  R  VV RRT+Y L KA
Sbjct: 299 NTALKKLYAYTNLQTTFGIINLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKKA 358

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++R H++ GL  A+ ++D V+++I+ S +P  A+  LM+R                    
Sbjct: 359 KERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMER-------------------- 398

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LSEVQ  AIL+ RL +LT +  D +  E   L  +IKE  +IL+S  R+  I
Sbjct: 399 ------YELSEVQADAILQTRLQKLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDAI 452

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I  EL  +K++    RRT IVE   ++  E+ +  E+ ++ V+  G+VKR+ +  ++ Q 
Sbjct: 453 IASELEEIKEKYGDERRTEIVEEDGEISAEELVSFEENILIVTKNGFVKRMSIG-FKTQH 511

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG G  G+ MR +D    +   ++   +L F++    Y    + +P      +G  +  
Sbjct: 512 RGGVGVIGIGMRGDDEPAIIVKCNSRDKLLVFTA-SKAYWLNAYEIPKQERTGKGVNIRM 570

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            LS+ +GERI  I+PF   E       ++  T+ G ++R  LS+F    R+G +A    S
Sbjct: 571 YLSIPEGERIVAIVPFQNFEGD-----ILILTEDGYIKRTPLSEFENAKRAGIVA----S 621

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             +I +        ++ + T  G  VRF    +  + GR++ GV+ ISL +GD +  ++ 
Sbjct: 622 GGKI-AFARHLDGKEVFIATTNGYAVRFKAEDVPEY-GRSAKGVKAISLRQGDSIAWLS- 678

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                       C           I GD +                             I
Sbjct: 679 ------------C-----------IRGDGD-----------------------------I 686

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-EIGALVAVFPVNDNDQIILVSDK 859
           LT++  G GKRT+  ++R+ +R   G+       IN   G +V    V  ++ ++ +S  
Sbjct: 687 LTLTADGHGKRTAVEEYRLVSRGAMGV-------INARSGGVVFSEYVEGDEDLLTISKD 739

Query: 860 GTLIRVPVNEIRIASRATKGVVI 882
           G  +++ V  I    R  +GV++
Sbjct: 740 GYALKIEVKSIPRQGRNARGVIV 762


>gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
 gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
          Length = 855

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 321/920 (34%), Positives = 477/920 (51%), Gaps = 126/920 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 12  VIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +  LL  +G+ TVDF  N+D S QEP VL A+ P +L+NG  GIAVGMATN+P HN
Sbjct: 132 ASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIAVGMATNVPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+IDN D+  + L  II  PDFPTG  I+   GI  AY  GRGSIV+RGV+
Sbjct: 192 LGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIVSTDGIAEAYTQGRGSIVMRGVA 251

Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE+    + +     IVVTE+P+QVNKA+ +EK A LV   R+  I+D+RDESDR G R
Sbjct: 252 KIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGISDIRDESDRDGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR AS  V+L+ LY+ T L S F    +AL   +P + TL  IL+ F+ FRE+ +
Sbjct: 312 VVIELKREASPQVVLHHLYQQTDLMSKFGAIFLALVDSQPRQLTLKQILQEFLNFREQTL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+  + L  A  R H++ GL  A+ANLD V+ I+R +P+  TA+               
Sbjct: 372 IRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAK--------------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      I  +  + +SE Q  AIL + + RLTGL R  ++ E   L  +I++   
Sbjct: 417 -----------ISLESDLQMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRR 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-------------- 535
           ++  RS L+  +K+EL S+K +   PRRTRI+      + E    R              
Sbjct: 466 LIDDRSELMKSLKKELRSLKRQYGDPRRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTT 525

Query: 536 ----------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVS 584
                     E+  +  +H GYV+R+      ++ R    +S +++ D +DF    ++ +
Sbjct: 526 AILQPVAPAEEETFLEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTN 585

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T  ++   +  G  Y   V  +P  S ++RG  LI +L       +T   P    E    
Sbjct: 586 TGQNLAIITRTGKAYPLNVGDIPTTSNRSRGTPLITLLP----SSVTKDPPMSLQELILA 641

Query: 645 NLYV---------VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
           +  V         +  T+ G ++R  L++ + +   G   +KL  +DE+           
Sbjct: 642 HFIVAQHSDKTDLILVTQQGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQ 701

Query: 696 ILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           ++L T  G+ +R P++  ++   GR          A+G QV                   
Sbjct: 702 MILATSGGRVLRLPVNDEQLPPMGRT---------AQGSQVT------------------ 734

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
              +  Q RL+S                       C  +  K   +L VSE GF KR S 
Sbjct: 735 --RLRKQERLVS-----------------------CLTVPPKASLLL-VSELGFAKRISL 768

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
              R + R   G +        +  AL  +  VN + +  L++ +  ++R  V+E+++ +
Sbjct: 769 DRVRSTTRGAIGTQLFQFK--GQKDALAGMVSVNSHQEAYLITSESRIVRFAVDEVKLQN 826

Query: 875 RATKGVVIFSTAKDERVVSV 894
               G  +F     E ++ V
Sbjct: 827 EEATGNRLFKLNTGETIIGV 846


>gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
 gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
          Length = 799

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 273/732 (37%), Positives = 451/732 (61%), Gaps = 46/732 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++ I +++I DEM++SY  Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G  ++K 
Sbjct: 2   KEKEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR LLI+GQGNFGS+D DPPAA RY
Sbjct: 62  YRKSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+
Sbjct: 122 TEIKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E ++   + ID   I ++ LM+ I+ PDFPTG +I G  G+K  + TGRG I++
Sbjct: 182 PPHNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIYGYEGVKKYFLTGRGKILL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E+ + +R  ++V EIPYQ+NK  ++ K  +LV+E ++  ++++RDESDR G R+
Sbjct: 242 RSKVHFEEIN-NRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  +K+      +LN L++ TSL++ F VN +AL   KP    L  ++K FV  R +V++
Sbjct: 301 VYNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGKPTILNLKDLIKHFVNHRHDVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LN+A++RAH++ G  I + NL+ V+ +I+ S +   A+++++ + +N       
Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILIK-YN------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q ++ILEL+L  LT L    I+ E   +  +I     I
Sbjct: 413 ------------------LSEIQVKSILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +S++     IIK+EL  VK +    RRT I    L +E+E  +     V+T+++ GY+K+
Sbjct: 455 ISNKFLQKKIIKKELNIVKTKYGDLRRTEI--NYLGLENE--VYNNKFVITITNTGYIKK 510

Query: 551 VPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             L+ Y+          GV  +  ++ +  + I   +  +LFF   G  +  KV+++P  
Sbjct: 511 NYLNKYKI---------GVTYKCKKNNLEKIIIAKNYQDILFFYENGKYFLLKVFKIPEV 561

Query: 610 SPQARGKALINILSLNQGERITT--IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +++G+A+ N++ +N+ E+I +  ++    D+   N  YV+  TK+G +++  L   IQ
Sbjct: 562 LKKSKGQAIQNLIKINKKEKICSSILIEKNNDKKYLNKNYVILITKNGIIKKTTL---IQ 618

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++ K  +K+ ++D I+  +   + ++I +  K G+ ++F  S I+  A +N + +  I
Sbjct: 619 YYKNPKNLIKIINKDYIIYAKLTNENSEIFIAEKSGKIIKFDESTIKKIALKNDLYIICI 678

Query: 728 SLAKGDQVISMA 739
           +  K + ++ ++
Sbjct: 679 NDLKKEYILVVS 690


>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
 gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
          Length = 963

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/740 (39%), Positives = 433/740 (58%), Gaps = 55/740 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  + +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++  K +
Sbjct: 105 EDERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 164

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+S+   L++G GNFGS+D DPPAA RYT
Sbjct: 165 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYT 224

Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL+ AA   LL D+G D VDF   +DGS  EP VL AR PN+L+NG  GIAVGMAT+I
Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284

Query: 191 PTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           P HNL EV +  V    +P+   L+ L+E++  PDFPTG +I+  R G K  Y TG+G +
Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344

Query: 249 VIRGVSHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +RG + +EK SG       R+ +V+T IPYQ NKA++ E+IA+LV  + I  ++D+RDE
Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RVV+E++RGA A+ +L+QLY  T LQ+  SVN+V L G +P+  +L+ I++ F+
Sbjct: 405 SDRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFL 464

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFR + V RR ++ L KA  R HV+ G     A  D VV  IR + +  TA+  L ++ +
Sbjct: 465 AFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPF 524

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                    +LSE Q  A+L + L RLTGL  D ++ E   L  
Sbjct: 525 -------------------------WLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTA 559

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            +++   +L  RSR++  + +E   ++D     RRT       D++ +  I  + M VT+
Sbjct: 560 RVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRT-------DIDTDAQIHAKKMNVTL 612

Query: 543 SHL-----------GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             L           GY+KR+  +V+  Q R  +GR+   MR  D VT +   +   +VLF
Sbjct: 613 DMLNSPSLVIMTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLF 672

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF--PEDESSWNNLYVV 649
           F+  G V+  + + +P  S  A G     +L L +GE IT ++P    E+        + 
Sbjct: 673 FTDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLC 732

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           F T  G ++R   S+F+ I  +GK A+ L   D +  V+   + + I++    G  + F 
Sbjct: 733 FVTARGLIKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFD 792

Query: 710 ISAIRVFAGRNSVGVRGISL 729
             ++R   GR + GV+ ++ 
Sbjct: 793 ADSVRA-QGRAAAGVKAMAF 811


>gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 525

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/514 (51%), Positives = 350/514 (68%), Gaps = 9/514 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA +VI+GRA+PD+RDGLKPVHRR+L+    +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + R AQ +SLR  L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L  DL K+TVDF  NYDG+ + P V   + PN+LVNG  GIAVG ATNIP HNL
Sbjct: 128 AKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ L E I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +N VAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINXVALHHGQPKIXNLKDIIAAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++   ++  
Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            L IL S  RL  +I++EL  V+++    RRT I
Sbjct: 488 LLRILGSADRLXEVIREELELVREQFGDKRRTEI 521


>gi|158338824|ref|YP_001520001.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
 gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 824

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 321/885 (36%), Positives = 481/885 (54%), Gaps = 101/885 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  LL+++G+ TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 SPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD  VA+ID+PD+ L+ LM ++ GPDFPTG  I+G+ GI +AY  GRGSI +R V+
Sbjct: 193 LGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIVGKQGIIDAYTNGRGSITVRAVT 252

Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE+    R +     I+VTE+PYQVNKA  +EKIA L+ + RI  IADLRDESDR+G R
Sbjct: 253 SIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A    +L QLYR T LQS F V M+AL    P + +L  +L+ F+ FRE+ +
Sbjct: 313 IVIELKREAQPPAVLEQLYRLTPLQSNFGVIMLALVNGVPLQLSLKEVLQKFLDFREQTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +  L +A+ R H++ GL  A+ +LD+++ I+R +P+  TA+ +L  +         
Sbjct: 373 TRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKVQLKSQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q  AIL + + RLTGL + ++R E + L  EI +   
Sbjct: 424 -----------------FQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLER 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-EDMVVTVSHLGYV 548
           +L +R  LL  +K++L ++K +   PRRT I       E     V  E ++V ++  GY 
Sbjct: 467 LLGNRHELLKALKKDLRALKKQYSDPRRTVIHGAAAKTEIFAAPVSDESVIVELNQRGYA 526

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVW 604
           + + +S    ++      SG +    D  TDL I        T +L F+  G  Y   + 
Sbjct: 527 RCMRVS---KRKNNAPDLSGELA---DVSTDLTIFRHTTELTTDLLLFTGSGKAYGVGLQ 580

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S + +GK L+ +L  + G     I  F   E S +   ++  ++ G ++R  +S+
Sbjct: 581 SIPFTSSKGKGKPLVTLLP-DSGRDDEIIARFLSTEIS-DTSQLILLSQQGKIKRLPMSE 638

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++   G  A K+ S D++  V    QE ++ + T  G+ +  PI+ I    GR + G 
Sbjct: 639 FAEMTSRGLGAAKIKSGDQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEM-GRTAQGN 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +   L K + ++ +A V   DAD                                     
Sbjct: 698 QVFRLRKQESIVGLAAV-RDDAD------------------------------------- 719

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +S KG+ KR      R+      G +A      ++   L+A+
Sbjct: 720 ---------------LLLISSKGYCKRLPIDLLRLGKVGDLGTQAMQFMIKSD--GLIAL 762

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            P N N  +I++S++    R+ +  + +  +   G  +  T + E
Sbjct: 763 LPANPNQDVIVLSNQERAARLNIETLPMWGQDGPGTQLLKTKRGE 807


>gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis
           M0579]
          Length = 533

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/517 (49%), Positives = 358/517 (69%), Gaps = 12/517 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            R W +S ++++     +DL     +  +  IG  +   YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            +++I     +L  +I + +DILS   R+  II+ EL
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDEL 517


>gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 875

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 330/905 (36%), Positives = 480/905 (53%), Gaps = 140/905 (15%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 12  VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +  LL  +G+ TVDF  N+D S QEP VL A+ P +++NG  GIAVGMATNIP HN
Sbjct: 132 ATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+IDNPD+    LM++I GPDFPTG  I+   GIK AY +GRGSIV+RGV+
Sbjct: 192 LGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGVA 251

Query: 255 HIEK--TSG---DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE+  TSG    +  IVVTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G R
Sbjct: 252 KIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+ +V+L+ LY++T L S F    +AL   +P + +L  IL+ F+ FRE+ +
Sbjct: 312 VVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQTL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR +  L  A  R H++ GL  A++ LDEV+ I+R +P+  +A+  L  R         
Sbjct: 372 LRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETR--------- 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            +  S  Q  AIL + L RLTGL    ++ E   L  +I+    
Sbjct: 423 -----------------LDFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRR 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-----------------DMEDEDC 532
           +LS RS LL  +K+EL S+K     PRRTRIV                         E  
Sbjct: 466 LLSERSELLKSLKKELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESK 525

Query: 533 IVR------EDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           I+R      E+ +V ++  GYV+RV P ++ R Q R        +   +DF    ++ +T
Sbjct: 526 ILRPQLPAVEETLVEMTLRGYVRRVTPHNLSRPQSR----EDITIEAIDDFPVTSYLTTT 581

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-------------------LNQ 626
             +++  + +G  Y   V  +P  S ++RG  LI +LS                   L  
Sbjct: 582 AETLVIINRMGKAYPLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGA 641

Query: 627 GERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           G + + + P  +    + +  +   ++  +  G ++R   +DF+ ++  G   MKL   D
Sbjct: 642 GLQSSPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDND 701

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIV 741
           E+         + ++L T  G+ +R  I+A ++   GR + G     L K +Q++   I 
Sbjct: 702 ELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVG-CIT 760

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
           L +  +                                               L  +FIL
Sbjct: 761 LSSTGE-----------------------------------------------LNNKFIL 773

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALVAVFP-------VNDNDQI 853
            VSE+G+ KR S    + S R G G +       N+    LVA  P        ++N  +
Sbjct: 774 LVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHSRNDACRGLVATTPGEAIYCLTSENRMV 833

Query: 854 ILVSD 858
            LV D
Sbjct: 834 TLVPD 838


>gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703]
          Length = 481

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 258/482 (53%), Positives = 339/482 (70%), Gaps = 18/482 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427

Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                     ++ + I  DG  YL+E Q +AIL+LRL +LTGL       E  +  + IK
Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGL-------EHENCWMSIK 479

Query: 486 EC 487
            C
Sbjct: 480 SC 481


>gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
          Length = 493

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/492 (52%), Positives = 342/492 (69%), Gaps = 9/492 (1%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LM
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVN 276
           E I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVN
Sbjct: 181 EHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVS 300

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN
Sbjct: 301 FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 360

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMY 448
           +D ++ +IR +P P  A+  L+   W   ++  +++   D +          G  DG  Y
Sbjct: 361 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYY 420

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V
Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 480

Query: 509 KDELDTPRRTRI 520
           +++    RRT I
Sbjct: 481 REQFGDKRRTEI 492


>gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 981

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 319/875 (36%), Positives = 465/875 (53%), Gaps = 107/875 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EMQ SYL YA++VI+ RA+PD RDGLKPV RRIL+ M  MG+  +  Y K A
Sbjct: 6   VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+A+AR+AQD+++R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL  + ++TVDF  N+DG+ +EP VL A  PN+LVNG  GIAVGMATNIP HNL
Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRT---GIKNAYATGRGSI 248
            EVVD    ++D      +I +  LM  I+GPDFPTG ++L      G+  AY +G+G I
Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IRG  H E     R ++++TE+PYQ NK +++E+IAELVRE  +  I+DLRDESDRQG 
Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+GA  +  +  LY  T LQS F + ++AL   +P   TL   L+ F+  R  V
Sbjct: 306 RIVIELKQGAEVETTIRTLYHRTPLQSTFGIILLALVDGEPRLLTLKQALRVFLEHRIVV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR++Y L +AR RAH+L GL +A+ NLDEV+++IR +P+ E AR  LM+R        
Sbjct: 366 VRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKR-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AIL+++L RL  L R  I  E   +  +IK   
Sbjct: 418 ------------------FKLSEIQAQAILDMQLRRLASLERKKIEEEYREVTAQIKALE 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+S  ++   +K+ELL +K++    RRT+IV     +E E  I      +T   +   
Sbjct: 460 SLLASAKKIRLAVKEELLKMKEQYGDRRRTQIV----TLEGETAI---HQFLTADEMAPA 512

Query: 549 KRVPLSVY---RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            +V + V    R  R  G+G                  ST   ++  ++ G      V  
Sbjct: 513 DKVWVGVMADGRVGRTAGEGLPATP------ALHCLRASTRAVLILANAQGQASALSVGA 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+      G  L    +L++G+R+   +    D+   +  Y++  T++  V+++ L + 
Sbjct: 567 LPVVERWQDGMPLHKASALSEGDRVVLALALEPDDPKTDR-YLLTVTRNALVKKSSLEEL 625

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              +      +K++  DE+L+      ++++LL T  G  +RF  S +R   G  + GV 
Sbjct: 626 PGPSAQKFTLVKVNPEDELLTGVVTEGQDEVLLLTAGGMAIRFSESEVRPM-GLVAAGVL 684

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+                                   +L  GD            V G +
Sbjct: 685 GM-----------------------------------KLTEGD-----------QVSGLV 698

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  L  +E+ IL     G   R +  DF +  R G+G+ AT VS+  E+   V   
Sbjct: 699 -------LNPQEKDILFACSDGTTGRIAGADFPLQGRYGQGVLATRVSRGAEV---VGAL 748

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            V    +++L      ++ VPV+EI    R  KG 
Sbjct: 749 GVQHQKEVLLHLSSQDVLVVPVSEIHRIKRGNKGT 783


>gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 810

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 314/823 (38%), Positives = 466/823 (56%), Gaps = 56/823 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG++
Sbjct: 21  YSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 80

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +   LI+G GN+GS D DP AA RYTE RL   A  LL D+ K TV
Sbjct: 81  SIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEARLSAIAMELLRDIEKRTV 140

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL AR+PN+LVNG  GI+ G AT IP HNL EV+D C+A+++ P++
Sbjct: 141 PFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPHNLREVIDACIALMEKPEM 200

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ +   ++GPDFPTG +I+G  GI+ AY TG+G I +R  + IE   G ++QIV+TEI
Sbjct: 201 TLEEIRLFVKGPDFPTGGIIMGEEGIREAYETGKGRIYLRSKTEIETLRGGKQQIVITEI 260

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EK++  IA++RDES R G R+V+ELK+ A A  IL  L + T
Sbjct: 261 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKDADAQGILAYLLKKT 320

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P +  L  +L+A++A + EVV  RT+Y L K  DRAHVL GL 
Sbjct: 321 DLQVTYNFNMVAIVNKAPRQLGLKAMLEAYIAHQREVVTYRTQYELEKLEDRAHVLEGLV 380

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDEV+  I+ S N + A+  L    W                           +E
Sbjct: 381 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 414

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AIL L+L RLT L    ++ EL  +  +I     IL S  +L+ +IK+EL+ ++D+
Sbjct: 415 RQADAILTLQLYRLTNLEITTLQKELEDIQKKITVLRGILESDKKLIALIKRELIEIRDK 474

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I + +  L +  E  + +ED++VT+S  GY+KR   S+    R GG+ R G 
Sbjct: 475 YGIDRRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRT--SMLSFTRSGGE-RDGS 531

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            +++ D++  L  V T  ++L F+  G  +   V ++P    +  G A++N++ L + +R
Sbjct: 532 GVKEGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDR 591

Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSV 687
           I +++P    DE+    L +VF TK+G V+R +L ++ +  RSG +A  K+   DE+LSV
Sbjct: 592 IVSVIPVKSFDENP--ELSLVFVTKNGQVKRTELKEY-EKKRSGAVAACKVGDGDEVLSV 648

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM--------A 739
                  +ILL TK G  +RF    +    GR S GVRGI+L   D+V+S          
Sbjct: 649 TVSRNNQEILLLTKQGMAIRFAEDEVNPM-GRVSAGVRGINLKDDDEVVSALWVEGEEGE 707

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK----NDSSVEGNISEERCQELKL 795
           +++ +D  Y +R   + +    R      T E    K    N S + G +    C+E  L
Sbjct: 708 VLVVSDLAYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVGGV---HCKEPVL 764

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
               +  V+++G     SS D  I++R   G     V K +EI
Sbjct: 765 ----LQAVTKEGQMHTFSSEDAPIADRKSIGKAMMSVDKNDEI 803



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 110/248 (44%), Gaps = 9/248 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +V  ++ G ++R  +  F +    R G    + D    +L V+T     ++L+ T+ GQ 
Sbjct: 504 LVTISREGYIKRTSMLSFTRSGGERDGSGVKEGDYIKYLLEVDTL---QNLLIFTQRGQY 560

Query: 706 VRFPISAIRVFAGRN--SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
              P+  I  F  ++  +  V  I LAK D+++S+  V   D + +  + ++      +R
Sbjct: 561 FLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVSVIPVKSFDENPELSLVFVTKNGQVKR 620

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
               + E+  S    +   G+  E     +    Q IL ++++G   R +  +     R 
Sbjct: 621 TELKEYEKKRSGAVAACKVGDGDEVLSVTVSRNNQEILLLTKQGMAIRFAEDEVNPMGRV 680

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G+R  ++   +E+  + A++   +  ++++VSD     R  + +  + SR  KGV  F
Sbjct: 681 SAGVRGINLKDDDEV--VSALWVEGEEGEVLVVSDLAYAKRSLLLDYPVQSRGGKGVQTF 738

Query: 884 STAKDERV 891
              + +RV
Sbjct: 739 EFKEGKRV 746


>gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 814

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 313/867 (36%), Positives = 472/867 (54%), Gaps = 96/867 (11%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +  +L++G GN+GS D DPPAA RYTE RL   A  LL D+ K TV
Sbjct: 83  SIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEARLSTIAMELLRDIDKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL E++D C A++ NP +
Sbjct: 143 PFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPHNLREIIDACFALMANPSM 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LM I+RGPDFPTG  I+G  GI+ AYA+G+G I IR  + IE   G ++QIV+TEI
Sbjct: 203 TVAELMTIVRGPDFPTGGTIMGEEGIREAYASGKGRIYIRSKAEIEDVRGGKQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EKR+  IA++RDES R G R+V+ELK+ A A  IL  L++ T
Sbjct: 263 PYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVELKKDADAQGILAYLFKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  F+ NMVA+    P +  L  +L A++  ++EVV  RT++ L KA DRAHVL GL 
Sbjct: 323 DLQVTFNFNMVAIVNKAPRQLGLKEMLAAYIDHQKEVVTNRTRFDLEKAEDRAHVLEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDE++  I+ S N + A+  L+ +                             +E
Sbjct: 383 KALNLLDEIIATIKASKNRQDAQNNLVSK--------------------------FGFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AIL L+L RLT L    +  EL      I     IL+S  +LL +I++E+L ++ +
Sbjct: 417 RQADAILTLQLYRLTNLEITQLEKELLETQKRIAYLQSILASEKKLLSVIREEMLEIRTK 476

Query: 512 LDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RR+ I   VE  L +  E  +  ED+++TVS  GY+KR  +  Y   R GG+  S 
Sbjct: 477 FGIDRRSDIRGEVEE-LKVNLEVMVQSEDVLLTVSREGYIKRTTMLSY--TRSGGELESA 533

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
            V +D D V  L  V+T  S+L F+  G  +   V ++P    +  G AL+N++ L++ +
Sbjct: 534 GV-KDGDVVRHLLSVNTIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLSKED 592

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSV 687
            +  I+P  + + +  +L  +F TK G V+R +L ++ + NRS  IA  K+   DE+++V
Sbjct: 593 SVIGIVPIRDFDQASASL--LFITKRGQVKRTELKEY-KSNRSTAIAACKVGDGDEVIAV 649

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  ++LL ++ G  +RFP + +    GR + GVRG+ L   D+++  A+V + + +
Sbjct: 650 LESNSNQELLLVSRQGMAIRFPETEVNPM-GRVAAGVRGMQLKDDDEIVGCALVANDEGE 708

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               +L +S+ G
Sbjct: 709 ----------------------------------------------------VLVLSDLG 716

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVS-----KINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +GKR+   ++ I  R GKGI   +       K N  G   AV+   +   +IL++  G  
Sbjct: 717 YGKRSLLAEYPIQGRGGKGIATFEFKEGKRVKPNGNGLTGAVY-CKEEKSLILIAASGAT 775

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE 889
             +P ++  I  R + G  + +  K++
Sbjct: 776 WTLPTDKTPIDERRSIGKPLVTLDKND 802



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKND------SSVEGNISEERC--QELKLKEQFI 800
           +RI Y++  ++++++L+S   EE+  ++        S + G + E +   + +   E  +
Sbjct: 447 KRIAYLQSILASEKKLLSVIREEMLEIRTKFGIDRRSDIRGEVEELKVNLEVMVQSEDVL 506

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTVS +G+ KRT+   +    RSG  + +  V   + +  L++   VN  D ++L + KG
Sbjct: 507 LTVSREGYIKRTTMLSY---TRSGGELESAGVKDGDVVRHLLS---VNTIDSLLLFTKKG 560

Query: 861 TLIRVPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               +PV+   E +     T  V +   +K++ V+ +  IR+
Sbjct: 561 QYFVLPVHQVPEFKWKDNGTALVNVIPLSKEDSVIGIVPIRD 602



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L ++++G  KRT   +++ SNRS     A    K+ +   ++AV   N N +++LVS +
Sbjct: 610 LLFITKRGQVKRTELKEYK-SNRS----TAIAACKVGDGDEVIAVLESNSNQELLLVSRQ 664

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G  IR P  E+    R   GV       D+ +V    +   E
Sbjct: 665 GMAIRFPETEVNPMGRVAAGVRGMQLKDDDEIVGCALVANDE 706


>gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
 gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
          Length = 819

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 312/870 (35%), Positives = 477/870 (54%), Gaps = 92/870 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A  LL D+ K TV
Sbjct: 83  SIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSSIAMELLRDIEKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL EV+D C+AV+  P+I
Sbjct: 143 LFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVMQKPEI 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +L  +M  I+GPDFPT  +I+G  GI +AY TG+G + +R  + IE   G ++QIV+TEI
Sbjct: 203 ELAEIMTFIKGPDFPTSGIIMGGEGILDAYRTGKGRVYLRSKTDIESLRGGKQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+ELK+ A A+ IL  L + T
Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADANGILAYLLKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P++  L  +L A++  + EVV  RT++ L KA DRAHVL GL 
Sbjct: 323 DLQITYNFNMVAIVNKTPQQLGLKAMLTAYIEHQREVVTNRTQFELEKAEDRAHVLEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDEV+  I+ S N + A+  L    W                           +E
Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  +IL L+L RLT L    ++ EL+ L  +I+    IL S  +L+ +I++ELL ++++
Sbjct: 417 RQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIAVIRKELLEIREK 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK-GRSG 568
               RR+ I E +  + +  E  +  ED++VT+S+ GY+KR   S+    R GG+ G SG
Sbjct: 477 YGIERRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT--SMLSFTRSGGELGSSG 534

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           V  +D D++T LF V+T  ++L F+S G  +   V ++P    +  G A++N++ + + +
Sbjct: 535 V--KDGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQIPEYKWKDAGTAIVNVIQVPKED 592

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I +++P    E    +L  VF ++ G V+R +L D+         A K+ + D I+ V 
Sbjct: 593 NIVSVIPVSNFEDPGKSL--VFVSRKGQVKRTELKDYATKRAGAVAAAKVAADDSIIQVV 650

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                 DI+L +K G  +RF    +    GR S GVRGI L  GD+V++   V       
Sbjct: 651 MSDGHKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLRDGDEVVAALWV------- 702

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                      +ND                  E  ILT+++ G+
Sbjct: 703 ---------------------------END------------------EGEILTITDLGY 717

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIR 864
           GKR+   D++  +R GKG+   +  +   +     A+   F   +  QI+  S+ G    
Sbjct: 718 GKRSLLLDYQAQSRGGKGMATFEFKEGKRVKPNGSAIAGAFYCREPLQIMAYSEDGQAYP 777

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   ++ IA R + G ++    K  ++V +
Sbjct: 778 IHTEQVPIAERKSIGKLLADVGKKGQIVDL 807


>gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis]
          Length = 470

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/495 (52%), Positives = 347/495 (70%), Gaps = 27/495 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT ++I  EMQ S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNQSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  L+ D+ KDT+DF+ NYDGS QEPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+ +N +ID+  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEILGRSGIRRAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  +G +++I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKTEIEDHNG-KQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN L++ T+LQS F +N++AL G +P+   L   L+ ++  +  V 
Sbjct: 302 IVIEVRRDANANVLLNNLHKQTALQSSFGINLLALVGGRPKVLNLKECLEEYLDHQIVVT 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q++AIL++RL RLTGL RD I  E N L   I E  +
Sbjct: 413 -----------------FELSYDQSQAILDMRLQRLTGLERDKIEGEYNELQQRIAELKE 455

Query: 490 ILSSRSRLLGIIKQE 504
           IL +  + L II++E
Sbjct: 456 ILENEYKGLEIIREE 470


>gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
 gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
          Length = 815

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 284/720 (39%), Positives = 433/720 (60%), Gaps = 40/720 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHFRKSAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW LR +LIE  GN GS+DGDP AA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYTEARLAPIASELLHDIDKETV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F PN+D +  EPVVL AR+PN+LVNG  GI+ G AT IP H+LGE++DG +  ++NPD 
Sbjct: 143 KFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIPPHHLGEIIDGAIMRMENPDC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            ++ LM +I+GPDFPTG ++ G  GIK AY TG+G +V+RG + IE+  G R+QIV+ EI
Sbjct: 203 TVEDLMTVIKGPDFPTGGIVQGIDGIKKAYETGKGKMVVRGRTSIEEIRGGRKQIVIAEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+VNKA +++KI EL  ++++  I+++RDE+DR G R+VIELK+ A AD +LN L++ T
Sbjct: 263 PYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRIVIELKKDADADSVLNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P+   L  +L A++  ++EVV +RT++ L KARDR H++ GL 
Sbjct: 323 DLQVSYNFNMVAIHNRRPQLMGLRELLDAYIEHQKEVVTKRTEFDLKKARDRKHIVDGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S + + A+  L+ +                             +E
Sbjct: 383 KALSILDEVIAAIRASKDKKDAKANLIAK--------------------------FAFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      + NE   L  +I+  L ILSS  +L  +IK+EL  ++ +
Sbjct: 417 PQAEAIVTLQLYRLTNTDITTLENEAADLEKKIETYLAILSSEKKLFTVIKKELRDIRKK 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RRT I   +  L +  E  I  ED++VT++  GY+KR  L  Y A      GR  +
Sbjct: 477 YADNRRTTIEAEIQELKINLEAMIPNEDVMVTITKDGYIKRTSLRSYTA----SNGRD-L 531

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            ++D D +     ++T  +VL F++ G      V  LP    +  G+ + N+++L + E 
Sbjct: 532 AIKDSDRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRWKDLGQHVSNLVTLERDEG 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I  ++P    E      +++F TK+G  ++ +L  + Q  R  K  +A+ L   DE+L V
Sbjct: 592 IIKVLPI---EDFNQPQFILFFTKNGMAKKTELQQY-QAQRYSKALVAINLKGDDEVLDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  ++ L ++LG  +RF  + I V  G+ + GV+G++L +GD+++S  I+   + D
Sbjct: 648 HLTDGSKEVFLASRLGYGLRFDEAEISV-VGQRAAGVKGMNLKEGDRLVSGKIIEDPEKD 706


>gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
 gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
          Length = 798

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 305/819 (37%), Positives = 471/819 (57%), Gaps = 56/819 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +   D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 4   VLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G +HPHG++++Y+A+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+L
Sbjct: 124 SAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +  ID+P   +D LM +++GPDFPTG +I G+ GIK AY TG+G IVIRG + 
Sbjct: 184 GEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGGIIQGKEGIKTAYETGKGKIVIRGKAT 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++ IV+TEIPY+VNKA +++KI EL  EK++  I D+RDE+DR G R+VIE++
Sbjct: 244 IEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVIEVR 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ ILN LY+ T LQ  +S NMVA++  +P+   L  +L A++  ++EVV  R++Y
Sbjct: 304 KDGNAEGILNYLYKNTDLQITYSFNMVAIHERRPKLLNLPQMLDAYIEHQKEVVANRSRY 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA++RAH++ GL  AV+ LDE++  IR S + + A+  LM                D
Sbjct: 364 ELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLM----------------D 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              +T          E Q  AI+ L+L RLT     D+R E N+L  +I++   IL S  
Sbjct: 408 QYGFT----------EPQAEAIVTLQLYRLTNTDIYDLREEANALHDKIEQLTSILESEK 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVKRVPL 553
           +LL +IK EL  +K      RRT I E + +++ E  +V   ED++VT++  GY+KR  L
Sbjct: 458 KLLSVIKSELRKMKKTYADERRTTIEEEIKEIKIEMNVVIPEEDVIVTITKDGYIKRTSL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G     M++ D +  +F ++T  ++L F++ G      V+ LP    + 
Sbjct: 518 RSYSASNGQDIG-----MKEGDRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRWKD 572

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ + +I+ L++ E++T+ +P     + + N Y++F TK G V++  L  + +  R  K
Sbjct: 573 LGQHISHIIPLDRDEQLTSAIPI----ADFENGYLLFITKQGFVKKTHLVHY-KAQRYSK 627

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +AM+L   DE+++V        I L T+ G  + F    I    G  + GV+GI L  
Sbjct: 628 PLVAMRLKEDDEVVNVYQTNGMGHIFLVTQYGYGLLFSEEEIGE-VGVRAAGVKGIHLKD 686

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S           DE I  +    A +++   + E  T  K    +   + E +  
Sbjct: 687 GDDVVS------GQQATDENIILVTKRGAAKKIARAEIELSTRAKRGQLL---VKEVKTN 737

Query: 792 ELKL------KEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             +L         +++  +EKG  +     + R+S+R G
Sbjct: 738 PHRLVSCHFISHGWVILKTEKGITEEVHVDELRLSDRYG 776


>gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032]
 gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus
           SAFR-032]
          Length = 812

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 289/715 (40%), Positives = 428/715 (59%), Gaps = 42/715 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL DL K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAIASELLKDLDKETV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+DG +  I+ P  
Sbjct: 143 EFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDGVIKRIEQPHC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            ++ LM +I+GPDFPTG +I G  GIK AY TG+G I+IRG + IE   G R+QIV+TEI
Sbjct: 203 TVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIRGKAEIETIRGGRQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+VNKA +++K+ E   E+++  I+++RDE+DR G R+V+ELK+ A A+ +LN LY+ +
Sbjct: 263 PYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVVELKKEADANGVLNFLYKNS 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   TL  IL A++A ++EVV  R+ Y L KA++R H++ GL 
Sbjct: 323 DLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTNRSAYELRKAKERHHIVDGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  LM++                             +E
Sbjct: 383 KALSILDEVIATIRSSNDKRDAKNNLMEK--------------------------YDFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q+ AI+ L+L RLT      +R+E N L + I E  DIL +  +LL +I   L  +K  
Sbjct: 417 AQSEAIVSLQLYRLTNTDITQLRDEANELDVRIAELEDILGNEKKLLKVITNSLKKLKKT 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  I  ED+ VTV+  GY+KR     Y A      G    
Sbjct: 477 YADDRRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+ + NI+S+++ E 
Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDES 591

Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686
           I   +P  E DE+S    Y++F TK G V++ KL  + +  R  K  +A+ L   DE++ 
Sbjct: 592 IQKAIPIKEFDETS----YLLFFTKGGMVKKTKLLQY-KAQRYSKPLVALNLKGDDELVD 646

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           V   T + ++ + TK G  + F    + V   R + GV+GI+L  GD+V+S  I+
Sbjct: 647 VHVTTGQQELFIATKNGYGLWFDEEEVSVVGPR-AAGVKGINLKDGDEVVSGQII 700



 Score = 41.6 bits (96), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E   +TV++ G+ KRTS   +  SN    G++ TD         L+  F +N  D ++L 
Sbjct: 503 EDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKDTD--------RLIHQFEMNTTDVLLLF 554

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG+ I  PV++   IR          I S  +DE +     I+E
Sbjct: 555 TNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKAIPIKE 600


>gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33]
 gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33]
          Length = 447

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/419 (57%), Positives = 315/419 (75%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424


>gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
 gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
          Length = 801

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 279/736 (37%), Positives = 439/736 (59%), Gaps = 42/736 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + +  + + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  + K
Sbjct: 2   ENSTQRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G V+G YHPHG++++Y+A+ RM+QDW LR  L++  GN GS+DGDP AA R
Sbjct: 62  AFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   +  LL D+ K+ VDF PN+D S  EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 122 YTEARLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++D  +  +++    LD L+  I+GPDFPTGA+I G   IK AYATG+G I+
Sbjct: 182 IPPHNLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGAIIQGIQEIKKAYATGKGRII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G R+QIVVTEIPY+VNKA +++KI +L  +K+I  I ++RDE+DR G R
Sbjct: 242 VRSKAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+   ++++LN L++ T LQ  +++NMVA++  +P    L+ ++ A++  ++EVV
Sbjct: 302 IVIELKKDVKSEMVLNYLFKNTDLQVSYNINMVAIHNKRPVLMGLMDLIDAYIQHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R+ Y L +AR+R H++ GL   V+ LDEVV +IR S +   A++ LM           
Sbjct: 362 TNRSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMV---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ L+L RLT      ++ E   L   I E  +
Sbjct: 412 ----------------AFEFSERQAEAIVMLQLYRLTNTDVTALQQENEELSKTILELTE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGY 547
           ILSS ++LL +I+ EL  V+ +  T RR++I E +  + +++ D I +ED++V V+  GY
Sbjct: 456 ILSSETKLLKVIQTELKQVRKDFKTERRSQIEEQIQEIKIDETDMITKEDVIVAVTKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRL 606
           VKR  +  Y A +         VM+D D +     V T  ++L F++ G F+Y   V++L
Sbjct: 516 VKRTSIRSYNATK-----SEMPVMKDGDELVSKLQVDTLQTLLMFTNRGSFIYLP-VYKL 569

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    +  G+ + N+++++  E++  +     D  S   L+  F T +G +++ +L DF 
Sbjct: 570 PEFKWKDIGQHVSNLVTIDSEEKVIAVFAI-SDFKSEECLF--FTTANGMIKKTRLGDF- 625

Query: 667 QINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +++R  +  +AM +   D ++SV      ND+++ TK G  ++F    I +  G  ++GV
Sbjct: 626 EVSRYNRAMMAMAVKEDDVLISVVKAPSPNDVIMVTKQGYLLKFSDEEIAI-TGLKAMGV 684

Query: 725 RGISLAKGDQVISMAI 740
           +GI++ K DQ+I + +
Sbjct: 685 KGIAIGKDDQLIKVVL 700


>gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
 gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
          Length = 817

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 300/840 (35%), Positives = 490/840 (58%), Gaps = 50/840 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + +  + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E   + I  +++KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804


>gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 465

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/458 (54%), Positives = 331/458 (72%), Gaps = 9/458 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++  
Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427

Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLAR 464
            D +          G  DG  YL+E Q +AIL+LRL +
Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQK 465


>gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
 gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
          Length = 816

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 300/840 (35%), Positives = 490/840 (58%), Gaps = 50/840 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + +  + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E   + I  +++KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 803


>gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13]
          Length = 814

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 298/803 (37%), Positives = 454/803 (56%), Gaps = 47/803 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPFRKSAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++YDA+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL DL K TV
Sbjct: 83  SVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDLDKKTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + QEPVVL A YPN+LVNG  GI+ G AT+IP H+LGEV+D  +  IDNP +
Sbjct: 143 EFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIPPHHLGEVIDATIMRIDNPSV 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LM +++GPDFPTG +I G  GIK AY TG+G I++RG++ +E   G ++QIV+TE+
Sbjct: 203 TVDELMTVVKGPDFPTGGIIQGVEGIKKAYETGKGKIIVRGLAEVEDIRGGKQQIVITEV 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+VNKA +++KI EL  +K++  I+++RDE+DR G RVVIELK+ A A+ ILN LY+ T
Sbjct: 263 PYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVVIELKKEADANGILNYLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  F+ NMVA+   +P    L   L A++  ++EV+  R+++ LN+A++R HV+ GL 
Sbjct: 323 DLQITFNFNMVAIYKKRPTLMGLPHFLDAYIDHQKEVISNRSRFELNRAKERQHVVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 383 KALSILDEVIATIRASKDKRHAKDNLIAK--------------------------FTFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E + L  ++ E   IL S  +L  +IK +L  VK  
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALQAEADELAKKVAELEAILGSEKKLFSVIKSDLKRVKKL 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR++I + +  + +  E  I  ED++VTV+  GYVKR  L  + A      G    
Sbjct: 477 YTNGRRSKIQDQIEEIKINLEVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M++ D +     ++T  ++L F++ G      V  LP    +  G+ + NI+ +++ E 
Sbjct: 533 -MKETDRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDIRWKDMGQHVANIVPIDRDES 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P    E      +++F T++G V++ +LS + +  R  K  +A+ L   D+++ V
Sbjct: 592 IIKAIPVSNFEDPN---FLLFVTRNGMVKKTELSAY-KAQRYSKPLMAVNLKGDDQVVDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  DI L T+ G  + F    I V   R + GV+GI+L   D V+S  +V   ++ 
Sbjct: 648 HLTDGAQDIFLATRSGYGLWFTEEEINVVGAR-AAGVKGINLKDSDYVVS-GLVFKKES- 704

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKND----SSVEGNISEERCQELKLKEQFILTV 803
               +    H  A ++L   + ++ T  K        V+ N  +    EL     FI   
Sbjct: 705 -KAMLFIATHRGAVKKLKITEFDKATRAKRGLVMLREVKNNPHQIAAVELVEPSSFIYVQ 763

Query: 804 SEKGFGKRTSSYDFRISNRSGKG 826
           + KG  ++ ++  +R ++R   G
Sbjct: 764 TVKGTVEKLAAASYRNNDRYSNG 786



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 15/91 (16%)

Query: 787 EERCQELKLK-------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +++ +E+K+        E  I+TV++ G+ KRTS   F  SN    G++ TD        
Sbjct: 486 QDQIEEIKINLEVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFGMKETD-------- 537

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            +++   +N    ++L ++KG  + +PV+E+
Sbjct: 538 RIISKLDINTTQTLLLFTNKGNYLYLPVHEL 568


>gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 807

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 303/803 (37%), Positives = 459/803 (57%), Gaps = 49/803 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 24  YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 83

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 84  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 143

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I  P  
Sbjct: 144 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 203

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME+I+GPDFPTG +I G  GIK AY TG+G I+IRG + IE   G REQIV+TEI
Sbjct: 204 SVDELMEVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 263

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ A A  ILN LY+ T
Sbjct: 264 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 323

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L KA+DR H++ GL 
Sbjct: 324 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 383

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 384 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +LL +I   L ++K +
Sbjct: 418 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 477

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GY+KR     + A      G    
Sbjct: 478 YADKRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+ L NI+++++ E 
Sbjct: 534 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDET 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E + S    Y++F TK+G V++ +L+ + +  R  K  +A+ L   DE++ V
Sbjct: 593 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 648

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                E+ I + T LG  + F    + V   R + GV+GI+L + D V+S  I+  +D+ 
Sbjct: 649 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQESDS- 706

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTV 803
               I       A +R+   + E+ +  K    +   +     + + L     EQ ++  
Sbjct: 707 ----IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKRNPHRVVALFACGLEQRLMVE 762

Query: 804 SEKGFGKRTSSYDFRISNRSGKG 826
           +EKG  K   + D R ++R   G
Sbjct: 763 TEKGERKELQAKDLRTNDRYSNG 785



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E   +TV++ G+ KRTS   F  SN    G++ TD         ++  F +N  D ++L 
Sbjct: 504 EDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTD--------RMLHQFEMNTTDVLLLF 555

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG+ I  PV++   IR          I +  +DE +V    I+E
Sbjct: 556 TNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDETIVKAIPIKE 601


>gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
 gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 823

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 319/897 (35%), Positives = 485/897 (54%), Gaps = 85/897 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +I  +         + I + M++S+  YA++VI  RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTE-VIDPEAGASNAPLELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+G+     + K AR+ G+V+GKYHPHG++A YD+  RMAQ W++R  LI+GQGNFGS+
Sbjct: 60  HQLGITHMVAHKKSARVVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K    L  D+ K+TVDFR N+DG+ +EP VL   YPN+LVNG  
Sbjct: 120 DGDNAAAMRYTEMRLSKLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSE 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT++P HNL E  D  +A +DNP+I    + + + GPDFPTG ++    G   A
Sbjct: 180 GIAVGMATSVPPHNLRETADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG++ +R    +E       ++V+ +IPY VNKA ++E+IAELVREK+I  +ADLR
Sbjct: 240 LDTGRGAVKLRSQWTVEDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+++G R+V+E+KR   A+ I  QL   T L++    N++AL G  P +  +  + + 
Sbjct: 300 DESNKKGIRIVLEIKREFEAEAIAFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEH 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F A R EV+ RRT++ L++A DR H+L GL +A+  LDE +  IR S + + AR      
Sbjct: 360 FRAHRIEVIQRRTQFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEAR------ 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                    LIDL       +G D T      Q +AIL+++L +LTGL   DIR+E + L
Sbjct: 414 -------GGLIDL-------LGIDVT------QAQAILDMKLQKLTGLQIQDIRDEHDRL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             E+ +  DIL+   R + I++ ELL + D+    R T I   L  +   D I  ED+++
Sbjct: 454 TAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVML 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  GY+KR+       Q RG KGRS + + ++D VT      +H +++  +  G V+ 
Sbjct: 514 IGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHA 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P      +G+   N+    +G  +  ++     ES  ++L V+F T  G V+R 
Sbjct: 574 IKAYDIPDTGLGNKGRHYRNVFEGVEGN-VVAMLTVDGLESVTHSL-VIF-TAQGLVKRT 630

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFA 717
            LS +    R G I  + L   D I+       E +  +++     + +RF +   R   
Sbjct: 631 PLSAYSNATRRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAI- 689

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR S GVR ++L++  +V++  I+ HAD                                
Sbjct: 690 GRTSRGVRAMNLSEDARVVAGDII-HAD-------------------------------- 716

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                            L++  ++ VSEKG GK T + +FR+ +R GKG+  T  +    
Sbjct: 717 ----------------DLEKAHLMVVSEKGLGKATPASEFRLQSRGGKGV--TSYTPNKR 758

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G +VA   + +   ++L +D+G   R+  +++    RAT G  I        V++V
Sbjct: 759 SGPVVAATVLFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIRNGSVRNVLAV 815


>gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 814

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 306/871 (35%), Positives = 476/871 (54%), Gaps = 91/871 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 8   LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPFRKAAKTV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE RL   
Sbjct: 68  GNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYTEARLSSI 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K TV+F PN+D +  EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 128 ALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P   +D LM +I+GPDFPTG +I G+ GIK AY TG+G I+IRG + IE+
Sbjct: 188 IDAVIMRIDKPKCTVDELMTVIQGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGKAAIEQ 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QI++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G R+VIELK+ A
Sbjct: 248 GKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRIVIELKKDA 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++  R+EVV  R++Y L 
Sbjct: 308 DAEGILNYLYKNTDLQVPYSFNMVAIHERRPKLLSLPELLDAYIEHRKEVVTNRSQYELK 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+  L+ +                  
Sbjct: 368 KAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAK------------------ 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E   L   I+E   IL+S  +LL
Sbjct: 410 --------YEFTEAQAEAIVSLQLYRLTNTDITALQQEAEQLEKTIQELTTILNSEKKLL 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+EL ++K +    RRT I + +  L +  E  I  ED++VTV+  GYVKR     Y
Sbjct: 462 AVIKRELKAMKKQYADERRTVIEDEIEELKINLEVMIPSEDVIVTVTKEGYVKRTSYRSY 521

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D +     ++T   +L F+  G      V+ LP    +  G+
Sbjct: 522 NASNGQDFG-----MKESDRLLSQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRWKDVGQ 576

Query: 617 ALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKI 674
            + N++ L++ + +   +P    DE     L +VF TK G V+R +L  + +Q      +
Sbjct: 577 HISNLIPLDRDDDLIAAVPVKRFDEP----LSLVFVTKQGMVKRTELGQYKVQRYTRPLV 632

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ +   DE++ V     +  +LL T  G  + F  + I +  G  + GV+GI+L +GD 
Sbjct: 633 AINVKEGDEVIHVHATDGQQSLLLITNQGYGLWFDEAEISM-VGVRAAGVKGINLKEGDH 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S   ++                                       EG           
Sbjct: 692 VVSAHPIV--------------------------------------AEG----------- 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQ+++ V+++G  K+    +F  ++R+ +G+      K N    + +V    +++ + 
Sbjct: 703 --EQYLVIVTQRGAIKKMPLSEFTKTSRAKRGVVMLRELKTNPHRIVASVLTDKNDEMLF 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           + ++ G +  + V+ +R+A R + G  I  +
Sbjct: 761 IRTETGEIETLSVSSLRVADRYSNGSFIIDS 791



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 14/205 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V V+  G VKR  L  Y+ QR   +    + +++ D V  +       S+L  ++ G+ 
Sbjct: 605 LVFVTKQGMVKRTELGQYKVQRYT-RPLVAINVKEGDEVIHVHATDGQQSLLLITNQGYG 663

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
                  + +   +A G   IN   L +G+ + +  P      +    Y+V  T+ G ++
Sbjct: 664 LWFDEAEISMVGVRAAGVKGIN---LKEGDHVVSAHPI----VAEGEQYLVIVTQRGAIK 716

Query: 659 RNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAI 713
           +  LS+F + +R+ +   +  +L +    +     T +ND  + + T+ G+     +S++
Sbjct: 717 KMPLSEFTKTSRAKRGVVMLRELKTNPHRIVASVLTDKNDEMLFIRTETGEIETLSVSSL 776

Query: 714 RVFAGRNSVGVRGISLAKGDQVISM 738
           RV A R S G   I   +   VI M
Sbjct: 777 RV-ADRYSNGSFIIDSDEAGNVIDM 800



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ--- 704
           +V  TK G V+R     +   N S      +   D +LS       + +LL T+ G    
Sbjct: 504 IVTVTKEGYVKRTSYRSY---NASNGQDFGMKESDRLLSQMEMNTTDVLLLFTRKGNYLY 560

Query: 705 CVRFPISAIR-----------VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           C  + +  IR           +   R+   +  + + + D+ +S+  V          + 
Sbjct: 561 CPVYELPDIRWKDVGQHISNLIPLDRDDDLIAAVPVKRFDEPLSLVFVTKQGMVKRTELG 620

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             K     R L++ + +E   + +  + +G             +Q +L ++ +G+G    
Sbjct: 621 QYKVQRYTRPLVAINVKEGDEVIHVHATDG-------------QQSLLLITNQGYG---- 663

Query: 814 SYDFRISNRSGKGIRATDVSKIN--EIGALVAVFP-VNDNDQ-IILVSDKGTLIRVPVNE 869
              F  +  S  G+RA  V  IN  E   +V+  P V + +Q +++V+ +G + ++P++E
Sbjct: 664 -LWFDEAEISMVGVRAAGVKGINLKEGDHVVSAHPIVAEGEQYLVIVTQRGAIKKMPLSE 722

Query: 870 IRIASRATKGVVIFSTAK 887
               SRA +GVV+    K
Sbjct: 723 FTKTSRAKRGVVMLRELK 740


>gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG]
 gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG]
          Length = 820

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 301/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +IDNP+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSVRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             +R+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------VRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 897

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 320/880 (36%), Positives = 483/880 (54%), Gaps = 73/880 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +  E + SYL+YA++VI+GRA+PD RDGLKPVHRRIL+GM ++G+  +K + 
Sbjct: 32  EEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHR 91

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ ++Y+AL R+AQD+S+   L++G GNFGS+D DPPAA RYTE
Sbjct: 92  KCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTE 151

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL K A   LL D+G + V+F   +DGS  EP VL AR PN+L+NG  GIAV +ATN+ 
Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE VD   A+  NPD  LD LM ++  PDFPTG V+  ++G+K  Y TG+G + +R
Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLR 271

Query: 252 GVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G + IE+ S      D++ +V++EIPYQ NKA ++E+IA+ V  + I  I+D+RDESDR 
Sbjct: 272 GRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRD 331

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIE+KRG  A  +L +LY  T L+  F VN VAL   KP    L  IL  F+ FR 
Sbjct: 332 GMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRV 391

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + RRT+++L+KA+DR H++ G +I +A+ D VV+IIR S +  +A ++L +       
Sbjct: 392 DTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHG---- 447

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q  +IL + L RLTGL  D +  EL  L  +I  
Sbjct: 448 ----------------------LSDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAH 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSH 544
              +LS++S+++ ++ QE +  K+    PRRT +  +E L  +ED+     +D ++T+S 
Sbjct: 486 FQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSP--PKDNILTLSE 543

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVKR+    + AQ RG +G+    +R  D ++          +LFFS  G V K    
Sbjct: 544 RGYVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAK 603

Query: 605 RLP------IGSPQARGKALINILSLNQGERITTIMPFPEDESS-WNNLYVVFATKHGNV 657
            +P      IG P     +L+N  +  + + +T ++     +    ++  VV  T  G V
Sbjct: 604 AIPQSELNTIGVP---ATSLLNTFA-KRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKV 659

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
             +  S    +   GK  + LD  D +  V    + +D L  T  G+  +  I   RV  
Sbjct: 660 --SVASAASMLGHKGKKVITLDKGDRLQQV-MFARTSDHLFITGTGKAGKGLILHCRVGD 716

Query: 718 GR-NSVGVRGISLAK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            R      R IS  K  G++ ++ A+V  A                   L+   T  +  
Sbjct: 717 FRVVKSACRPISGIKTMGEKKVAEAVVEDAGD-------DEDDDEDDGELLPPKTVGMAI 769

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           +  +  V    SEE          FIL  ++KG GK  ++  +R+  R   G+      K
Sbjct: 770 VPGERMVSA--SEEFG-------PFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKK 820

Query: 835 INE--IGALVAVFPVNDN--DQIILVSDKGTLIRVPVNEI 870
            ++  +  +  V  + D+  D+++L +  G   R+ VN++
Sbjct: 821 GDDDALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDL 860



 Score = 42.0 bits (97), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT+SE+G+ KR    +F   NR  +G R   +SK+     L       D+DQI+  SD+
Sbjct: 538 ILTLSERGYVKRICPKNFGAQNRGTRGKR---MSKLRANDELSKAMHCKDSDQILFFSDR 594

Query: 860 GTLIRVPVNEIRIASRATKGV 880
           G + ++    I  +   T GV
Sbjct: 595 GRVQKLSAKAIPQSELNTIGV 615


>gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
 gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
          Length = 817

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 490/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  +L  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESENLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + +  + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQITIDPTDFPIGDRTSNGSFAMD 797

Query: 832 VSKINEI 838
             K  E+
Sbjct: 798 EKKGGEV 804


>gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
 gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
          Length = 812

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 289/715 (40%), Positives = 428/715 (59%), Gaps = 42/715 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL DL K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAIASELLKDLDKETV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+DG +  I+ P  
Sbjct: 143 EFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDGVIKRIEQPHC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            ++ LM +I+GPDFPTG +I G  GIK AY TG+G I+IRG + IE   G R+QIV+TEI
Sbjct: 203 TVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIRGKAEIETIRGGRQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+VNKA +++K+ E   E+++  I+++RDE+DR G R+V+ELK+ A A+ +LN LY+ +
Sbjct: 263 PYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVVELKKEADANGVLNFLYKNS 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   TL  IL A++A ++EVV  R+ Y L KA++R H++ GL 
Sbjct: 323 DLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTNRSAYELRKAKERHHIVDGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  LM                D   +T          E
Sbjct: 383 KALSILDEVIATIRSSNDKRDAKNNLM----------------DKYDFT----------E 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q+ AI+ L+L RLT      +R+E + L + I E  DIL +  +LL +I   L  +K  
Sbjct: 417 AQSEAIVSLQLYRLTNTDITQLRDEASELDVRIAELEDILGNEKKLLKVITNSLKKLKKT 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  I  ED+ VTV+  GY+KR     Y A      G    
Sbjct: 477 YADERRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+ + NI+S+++ E 
Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDES 591

Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686
           I   +P  E DE+S    Y++F TK G V++ +L  + +  R  K  +A+ L   DE++ 
Sbjct: 592 IQKAIPIKEFDETS----YLLFFTKGGMVKKTELLQY-KAQRYSKPLVALNLKGNDELVD 646

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           V   T + ++ + TK G  + F    + V   R + GV+GI+L  GD+V+S  I+
Sbjct: 647 VHVTTGQQELFIATKNGYGLWFDEEEVSVVGPR-AAGVKGINLKDGDEVVSGQII 700



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E   +TV++ G+ KRTS   +  SN    G++ TD         L+  F +N  D ++L 
Sbjct: 503 EDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKDTD--------RLIHQFEMNTTDVLLLF 554

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG+ I  PV++   IR          I S  +DE +     I+E
Sbjct: 555 TNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKAIPIKE 600


>gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus
           TK-6]
          Length = 761

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 285/722 (39%), Positives = 425/722 (58%), Gaps = 65/722 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT+V+I +E++ SY+ YA++VI+GRAIPD RDGLKPV RRIL+ M QMG+   K +VK A
Sbjct: 3   ITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G V+G YHPHG+ A+YDAL RMAQD+++R  LI GQGNFGS+DGDPPAA RY+E +L
Sbjct: 63  RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAKL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ ++TVDF PN+DGS  EP +L +++PN+L NG  GIAVG+AT+IP HNL
Sbjct: 123 SKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV    + +  NP+I  + +M+ I+GPDFPTG ++     +   Y TGRG + +R  +H
Sbjct: 183 KEVCSALIELAKNPNISTEEIMKRIKGPDFPTGGIVENYQELIEYYHTGRGHVRVRAKAH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +EK  G REQIV+TEIPYQVNKA +++++AELVRE ++ +I+++RDESD++G R+VIELK
Sbjct: 243 VEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A    +L +LY++T+L+  F +N V L   +P++  +  +L+ F+  R EV++RR K+
Sbjct: 303 RDAQGQKVLEKLYKHTALRKNFPINFVVLIDNQPKQVGIKELLQEFLRHRLEVILRRAKH 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DR H++ GL  A+ +LD+V++ IR S +   A+ +LM+                
Sbjct: 363 HLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMK---------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             +YT        LSE Q  A+L++RL RLT L    +  E   L   I+    ++SS  
Sbjct: 407 --NYT--------LSERQANAVLDMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISSEE 456

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + +  QE+  +  E  +PRR+ +    L  E+E+                V ++ + +
Sbjct: 457 ERIKVFIQEMEEIVKEFPSPRRSFV----LGFENEE----------------VGQITVII 496

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y      GK      M++E  V D+  V     +   S+ G VY    W   I   QA  
Sbjct: 497 Y----SNGKIMPLEEMQEEGQVVDVLDVPFSEGLFMVSNRGRVY----W---IAGSQALQ 545

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            + ++    ++    + +  F   ++S     ++  TK G V++  + DF    +   I 
Sbjct: 546 GSKVSFKEADE----SVVGAFVRSQASHR---IILITKRGYVKKIPIVDFEYKTQGMSII 598

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              +  DE++ V    +E DILL T+ G+ +RFPI  I   A   S GV GI L   D +
Sbjct: 599 KFSEEEDEVVKVLQSPEEGDILLLTRKGKMLRFPIRDIPP-ATVGSKGVIGIKLEGDDTL 657

Query: 736 IS 737
           IS
Sbjct: 658 IS 659


>gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
 gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
          Length = 820

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 301/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IYDA+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62]
          Length = 820

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467]
          Length = 823

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 494/837 (59%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++ + L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
 gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 823

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 301/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IYDA+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 839

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 319/905 (35%), Positives = 487/905 (53%), Gaps = 116/905 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 15  VIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL RM Q +S R  L++G GNFGSVD DPPAA RYTE RL
Sbjct: 75  RVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETRL 134

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH  LL ++G++TV+F  N+D S QEPVVL ++ P +L+NG  GIAVGMATNIP HN
Sbjct: 135 SPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  +A+ID PD+ +D L+E++ GPDFPTG +I+G  GI+ AY TGRGSI +R V+
Sbjct: 195 LAEVVDALIALIDRPDLSVDQLLELVPGPDFPTGGIIIGTEGIREAYTTGRGSITLRAVA 254

Query: 255 HIEKTSGDR-----EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+    R       I++TE+PYQVNK+ ++EKIAEL+ + RI  IADLRDESDR+G R
Sbjct: 255 QMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREGMR 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR      +L+QLYR T LQ+ F V M+AL   +P +  L  +L+ F+ FRE  +
Sbjct: 315 IVIELKRETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQPRQMGLKELLEHFLNFREHTL 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L++A+ R H++ GL  A+ NLD V+ ++R + +   A++ L Q   N      
Sbjct: 375 TRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTL-QSELN------ 427

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q  AIL + L RLTGL + ++R E + L  +I++   
Sbjct: 428 -------------------LSDRQADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLET 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLG 546
           +L SR  LL  +K++L S+K +    R TRI    E L  +  E+     ++ + +S  G
Sbjct: 469 LLGSRHELLKALKKDLRSLKRQYADQRLTRIQTEAEPLPSV--EELAADTEVTLELSQRG 526

Query: 547 YV---------KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT----SVLFFS 593
           YV         +R       A+    K       + ++   DL + +       ++L F+
Sbjct: 527 YVRCLRGGERGRRNQARSEGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFT 586

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIM---PFPEDESSWNNLYVV 649
             G  Y+  +  +P+G  + +G  L+ +L  + Q E I       P P ++       +V
Sbjct: 587 QSGKGYRVDLTAMPLGDRRDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQ------LV 640

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G  +R  L DF ++   G    KL   D +  +      +++ + T  G+ +RF 
Sbjct: 641 LLSAEGRAKRISLEDFAEVTARGLSVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFA 700

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              I +  GR ++G + I L K ++++  AIVL     YD                    
Sbjct: 701 SDEIPLM-GRTTLGQQAIRLHKQERLVG-AIVLQT---YDN------------------- 736

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +L VSE+G+GKR      R+      G   
Sbjct: 737 ------------------------------LLLVSERGYGKRMPLNAVRLGRLGDLG--T 764

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           T +  + +   L A+ P   N +++L +DK  +  + + +I I  +   G ++ +    E
Sbjct: 765 TAIQFVAKPDHLAAIAPAPSNAEVMLFTDKNRMANLSLAQIPIWGKDGSGKLLLNLEVGE 824

Query: 890 RVVSV 894
           ++ S 
Sbjct: 825 KLTSA 829


>gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
 gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
          Length = 803

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 309/889 (34%), Positives = 483/889 (54%), Gaps = 102/889 (11%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRRI++ M ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152
           YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL +  H  LL ++ + TVD
Sbjct: 61  YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+D S QEP+VL A+ PN+++NG  GIAVGMATNIP HNLGEVVDG +A++D P++ 
Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-----KTSGDREQIV 267
            ++L ++I GPDFPTGA I+   GI +AY TGRGSI IRG+++ E     K    R+ IV
Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTKGIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAIV 240

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA+ + KIA LV + RI  I+D+RDESDR+G RVVIELKR A   +ILN L
Sbjct: 241 VTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILNDL 300

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+LQ+ F   M+A+   +P + +L  IL+AF+ FRE  ++R+  + L + R+R H++
Sbjct: 301 YKMTALQTNFGALMLAIEDGQPRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFHIV 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA+ +LD+++ I+R +P+  TA+ E+++                            
Sbjct: 361 EGLLIALDSLDDIIDILRNAPDGTTAKVEMIE--------------------------AF 394

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LS+ Q  +IL + L RLTGL +  +R+E + L   I +   ++S R+ L+  +K+EL +
Sbjct: 395 DLSDRQADSILAMPLRRLTGLEQQKLRDESDELDERINQLETLVSDRNVLMKSLKKELRA 454

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVRED-------MVVTVSHLGYVKRVPLSVYRAQR 560
           +K +    RRTRI      +++E  +            ++  +  GYV+R      R +R
Sbjct: 455 LKKKFGDRRRTRIQTEAERVKEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKT-RTRR 513

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           +   G +  +   +D      I +    VL  +  G  +   V  +PI   Q++G  LI 
Sbjct: 514 KDASGPTKALEEFDDVTIQTEITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIG 573

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L    G    +++       +     ++  T  G V+R   S+   +   G  A+KL  
Sbjct: 574 LLPDAVGSTPDSVVTQIVLSEARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKD 633

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMA 739
            D +         +D++L +  G+ +RF I A ++    R + G +GI L K ++++   
Sbjct: 634 DDLLKHAFIAPMGSDLVLASSGGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSERLVG-- 691

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                                                             C  +  K+  
Sbjct: 692 --------------------------------------------------CIPVSPKDTL 701

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL VS KG+GKR     F+ SNR G G ++   +  ++  ALV++        + +++D+
Sbjct: 702 IL-VSNKGYGKRILVSTFKTSNRGGIGSQSFKFNLKSD--ALVSLNVAVPEANLTVLTDQ 758

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           G   ++ ++ + +  R+     + +  + E +V      E+ + D  ES
Sbjct: 759 GRAAKIAIDSVPLQGRSQPCARLVTPERTETIV------ETLVTDMPES 801


>gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583]
 gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583]
 gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 820

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
 gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
          Length = 820

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 494/837 (59%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++ + L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis]
 gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137]
 gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000]
 gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017]
 gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027]
 gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244]
 gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031]
 gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302]
 gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341]
 gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346]
 gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B]
 gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630]
 gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A]
 gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 823

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
 gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
          Length = 820

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
 gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
          Length = 820

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 298/829 (35%), Positives = 491/829 (59%), Gaps = 52/829 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKG 826
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNG 791



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
 gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
          Length = 823

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312]
          Length = 823

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42]
          Length = 807

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 314/878 (35%), Positives = 485/878 (55%), Gaps = 100/878 (11%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I++PD 
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIESPDC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IRG + +E   G REQIV+TEI
Sbjct: 203 TVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVESVRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVV+ELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  R+ + L KA++R H++ GL 
Sbjct: 323 DLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+ +IR S + + A++ +M                  S +T         +E
Sbjct: 383 KALSVLDEVIAVIRASSDKKDAKQNVM------------------SKFT--------FTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I+E   ILS   +LL +I   L  +K  
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKT 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GYVKR     + A      G    
Sbjct: 477 YADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+ + NI+++++ E 
Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDMGQHVTNIITIDRDET 591

Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686
           I   +P  E D SS    Y++F TK+G V+R +++ + +  R  K  +A+ L   DE++ 
Sbjct: 592 IVKAIPVKEFDPSS----YLLFMTKNGMVKRTEMTHY-KAQRYSKALVALNLKGDDELID 646

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V      + + + T+LG  + F    + V   R + GV+GI++  GD V+S  I+   D+
Sbjct: 647 VHVTDGGSQLFIATRLGYGLWFGEDEVNVVGAR-AAGVKGINVKDGDTVVSGQILHETDS 705

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                                ++ V+++
Sbjct: 706 -----------------------------------------------------LVLVTQR 712

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  KR +  +F  ++R+ +G+      K N   A V VF     D I   ++KG  I + 
Sbjct: 713 GAIKRMNLSEFEKTSRAKRGVIMLRELKKNPHRA-VGVFACALADMIAAETEKGERIEIA 771

Query: 867 VNEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902
           V  +R   R + G   F T +DE   V  V RI  S++
Sbjct: 772 VKSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807


>gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
          Length = 812

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 309/877 (35%), Positives = 473/877 (53%), Gaps = 109/877 (12%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G 
Sbjct: 16  MGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKPFRKSAKTVGNVIGN 75

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ RM+QDW  R +LIE  GN GSVDGDPPAA RYTE RL   A  +L 
Sbjct: 76  YHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEARLSAIAAEMLR 135

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+GK TV+F PN+D    EP VL AR+PN+LVNG  GI+ G AT+IP H L EV+D  + 
Sbjct: 136 DIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPHALDEVLDAVLM 195

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +D P++ +D LM +++GPDFPTG +I G  GIK AY TGRG I++R  + +E   G +E
Sbjct: 196 RLDKPNVTVDELMTVMKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRAQAVVEPIKGGKE 255

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TE+PY VNKA +++KI E   +KR+  IA++RDESDR G RVVIELK+      IL
Sbjct: 256 QIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVIELKKDVPGQGIL 315

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L++ T LQ  ++ NM+A++  +P   TL  +L A++A ++EVV  R+ Y L KA+DR+
Sbjct: 316 QYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYIAHQKEVVTNRSIYDLQKAKDRS 375

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL  A++ LDEV+  IR S + + A+  L ++                        
Sbjct: 376 HIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEK------------------------ 411

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                +EVQ  AI+ L+L RLT     ++R E + L   I +   IL S ++L+ +IKQE
Sbjct: 412 --FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDELDKLIAKLEGILQSEAKLVRVIKQE 469

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDE-DCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           LL +K     PRR++I + + +++   D +V  E++VVTV+  GY+KR     + A    
Sbjct: 470 LLDIKKRFTEPRRSKIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAA---- 525

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+    M+D D++     ++T   +L F++ G    + V  L    P  R K L    
Sbjct: 526 SNGQD-FAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHEL----PDIRWKDL---- 576

Query: 623 SLNQGERITTIMPFPEDES----------SWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
               G+ I++I+P  EDES             N YV  ATK G ++R+ L+D+     S 
Sbjct: 577 ----GQHISSIVPTGEDESIIAVYGFETFEQPNTYVFTATKDGQIKRSPLADYAVTRYSK 632

Query: 673 KI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            I  M + + D ++     T + +++LTT     +RFP+  + V  G  + GV+GI+L  
Sbjct: 633 PIKTMNVKAGDAMIYASFVTDDVELMLTTDTAYAIRFPMEELPV-TGVKTGGVKGITLKD 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G+ ++ +  VL  D                                              
Sbjct: 692 GEALVGVN-VLQPDV--------------------------------------------- 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 Q+++ V+++G  K+ +  +  ++ R+ +G++     K N    +VAV    D +
Sbjct: 706 -----TQYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANP-HRIVAVVQATDGE 759

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           Q+++ ++KG    + V  +  A R + G      A D
Sbjct: 760 QVVIETEKGVQEVIDVQALSRADRHSNGSFKVDIATD 796


>gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342]
          Length = 823

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645]
          Length = 823

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141]
          Length = 823

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSNIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802


>gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
 gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
          Length = 820

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
 gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
          Length = 820

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012]
          Length = 823

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSNIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L    G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVNNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802


>gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
 gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
          Length = 820

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70]
 gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70]
          Length = 814

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/722 (39%), Positives = 428/722 (59%), Gaps = 38/722 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 8   LALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPFRKAAKTV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G +HPHG++++YDA+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE RL   
Sbjct: 68  GNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAI 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K TVDF PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 128 ASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D LM ++ GPDFPTG +I G+ GIK AY TG+G I+IRG + IE+
Sbjct: 188 IDAVIMRIDKPNCTVDELMTVLHGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGKAVIEQ 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QI++TE+PY+VNKA +++KI EL  +K++  I+D+RDE+DR G R+VIELK+ A
Sbjct: 248 AKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRIVIELKKDA 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+ ILN LY+ T LQ  ++ NMVA++   P+  +L  +L A++  R+EVV  R++Y L 
Sbjct: 308 DAEGILNYLYKNTDLQVPYNFNMVAIHKRHPKLLSLPELLDAYIEHRKEVVTNRSQYELK 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+  LM +                  
Sbjct: 368 KAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAK------------------ 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E   L   I+E   IL+   +LL
Sbjct: 410 --------YKFTEAQAEAIVSLQLYRLTNTDITALKQEAEQLEKTIQELTAILNDEKKLL 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+EL ++K +    RRT I + + +++   E  I  ED++VTV+  GYVKR     Y
Sbjct: 462 AVIKKELRAMKKQYADERRTVIEDEIEEIKINLEVMIPAEDVIVTVTKEGYVKRTSYRSY 521

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D +     ++T   +L F+  G      V+ LP    +  G+
Sbjct: 522 SASNGQDFG-----MKESDRLLSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRWKDVGQ 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIA 675
            + N++ L++ + I   +P  + + S   L ++F TK G V+R +L+ + +Q      +A
Sbjct: 577 HISNLIPLDRNDEIIAAVPVKQFDDS---LSLIFVTKRGMVKRTELAQYKVQRYTRPLVA 633

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           M +   DE++ V     +  +LL T  G  + F  + I    G  + GV+GI+L +GD V
Sbjct: 634 MNVKEDDEVIHVYVTDGQQSLLLVTNQGYGLWFDEAEIST-VGVRAAGVKGINLKEGDYV 692

Query: 736 IS 737
           +S
Sbjct: 693 VS 694



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 16/139 (11%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++ V+  G VKR  L+ Y+ QR     R  V M  +++D V  +++     S+L  ++ G
Sbjct: 605 LIFVTKRGMVKRTELAQYKVQRYT---RPLVAMNVKEDDEVIHVYVTDGQQSLLLVTNQG 661

Query: 597 FVYKEKVW--RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           +     +W     I +   R   +  I +L +G+ + +  P  ++E    ++Y+V AT+ 
Sbjct: 662 Y----GLWFDEAEISTVGVRAAGVKGI-NLKEGDYVVSAHPIGKEE----HMYLVIATQR 712

Query: 655 GNVRRNKLSDFIQINRSGK 673
           G V++  LS+F + +R+ +
Sbjct: 713 GAVKKMPLSEFEKTSRAKR 731



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQII 854
           +Q +L V+ +G+G       F  +  S  G+RA  V  IN  E   +V+  P+   + + 
Sbjct: 651 QQSLLLVTNQGYGLW-----FDEAEISTVGVRAAGVKGINLKEGDYVVSAHPIGKEEHMY 705

Query: 855 LV--SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           LV  + +G + ++P++E    SRA +GVV+    K
Sbjct: 706 LVIATQRGAVKKMPLSEFEKTSRAKRGVVMLRELK 740


>gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
 gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
          Length = 812

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 309/877 (35%), Positives = 472/877 (53%), Gaps = 109/877 (12%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K + K A+  G V+G 
Sbjct: 16  MGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKPFRKSAKTVGNVIGN 75

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ RM+QDW  R +LIE  GN GSVDGDPPAA RYTE RL   A  +L 
Sbjct: 76  YHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEARLSAIAGEMLR 135

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+GK TV+F PN+D    EP VL AR+PN+LVNG  GI+ G AT+IP H L EV+D  + 
Sbjct: 136 DIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPHALDEVLDAVLM 195

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +D P   +D LM +++GPDFPTG +I G  GIK AY TGRG I++R  + +E   G +E
Sbjct: 196 RLDKPTATVDELMTVLKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRAQAVVEPIKGGKE 255

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIVVTE+PY VNKA +++KI E   +KR+  IA++RDESDR G RVVIELK+      IL
Sbjct: 256 QIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVIELKKDVPGQGIL 315

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L++ T LQ  ++ NM+A++  +P   TL  +L A++  ++EVV  R+ Y L KA+DR+
Sbjct: 316 QYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYITHQKEVVTNRSIYDLQKAKDRS 375

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL  A++ LDEV+  IR S + + A+  L  +                        
Sbjct: 376 HIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAK------------------------ 411

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                +EVQ  AI+ L+L RLT     ++R E + L   I +   IL S ++L+ +IKQE
Sbjct: 412 --FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDDLNKLIAKLEGILQSEAKLVRVIKQE 469

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDE-DCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           LL +K     PRR+RI + + +++   D +V  E++VVTV+  GY+KR     + A    
Sbjct: 470 LLDIKKRFTEPRRSRIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAA---- 525

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+    M+D D++     ++T   +L F++ G    + V  L    P  R K L    
Sbjct: 526 SNGQD-FAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHEL----PDIRWKDL---- 576

Query: 623 SLNQGERITTIMPFPEDES----------SWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
               G+ I++I+P  EDES             N Y++ ATK G ++R+ L+D+     S 
Sbjct: 577 ----GQHISSIVPTSEDESIIAVYGFETFEQPNTYILTATKDGQIKRSPLADYAVTRYSK 632

Query: 673 KI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            I  M + + D ++     T + ++LLTT     +RFPI  + V  G  + GV+GI+L  
Sbjct: 633 PIKTMNVKAGDAMIYASFMTDDVELLLTTDTAYAIRFPIEELPV-TGVKTGGVKGITLKD 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G+ ++ + +                                  L+ D +           
Sbjct: 692 GEALVGVNV----------------------------------LQPDET----------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 Q+++ V+++G  K+ +  +  ++ R+ +G++     K N    +VAV    +++
Sbjct: 707 ------QYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANP-HRIVAVIQATNDE 759

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           Q+++ ++KG    + V  +  A R + G      A D
Sbjct: 760 QVVIETEKGVQEFIDVQALTRADRHSNGSFKVDIATD 796


>gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis]
 gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 806

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 307/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I  P  
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE   G REQIV+TEI
Sbjct: 203 SVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L KA+DR H++ GL 
Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +LL +I   L ++K +
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GY+KR     + A      G    
Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+   N++++++ E 
Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E + S    Y++F TK+G V++ +L+ + +  R  K  +A+ L   DE++ V
Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                E+ I + T LG  + F    + V   R + GV+GI+L + D V+S  I+  +D+ 
Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               I+  +++G
Sbjct: 706 ----------------------------------------------------IVLFTQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR S  +F  ++R+ +G+      K N    +VA+F      +++  ++KG    +  
Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQT 772

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            E+R   R + G   F   +  +V +V R+   +
Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
 gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
          Length = 820

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 299/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           +   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 743 LLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601


>gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto
           BEST195]
          Length = 806

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 307/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I  P  
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE   G REQIV+TEI
Sbjct: 203 SVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L KA+DR H++ GL 
Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +LL +I   L ++K +
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GY+KR     + A      G    
Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+   N++++++ E 
Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E + S    Y++F TK+G V++ +L+ + +  R  K  +A+ L   DE++ V
Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                E+ I + T LG  + F    + V   R + GV+GI+L + D V+S  I+  +D+ 
Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               I+  +++G
Sbjct: 706 ----------------------------------------------------IVLFTQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR S  +F  ++R+ +G+      K N    +VA+F      +++  ++KG    +  
Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQA 772

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            E+R   R + G   F   +  +V +V R+   +
Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 806

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 307/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I  P  
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE   G REQIV+TEI
Sbjct: 203 SVDELMELIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L KA+DR H++ GL 
Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +LL +I   L ++K +
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GY+KR     + A      G    
Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+   N++++++ E 
Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E + S    Y++F TK+G V++ +L+ + +  R  K  +A+ L   DE++ V
Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                E+ I + T LG  + F    + V   R + GV+GI+L + D V+S  I+  +D+ 
Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               I+  +++G
Sbjct: 706 ----------------------------------------------------IVLFTQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR S  +F  ++R+ +G+      K N    +VA+F      +++  ++KG    +  
Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQT 772

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            E+R   R + G   F   +  +V +V R+   +
Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043]
          Length = 823

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 299/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++               
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K++DF +
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629

Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + V  G  
Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++   K    
Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745

Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           +   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K
Sbjct: 746 LLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604


>gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra
 gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra
          Length = 500

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/492 (50%), Positives = 348/492 (70%), Gaps = 13/492 (2%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 2   RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH +L DL K+TVDF PNYDG
Sbjct: 62  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +   P V+  R PN+LVNG  GIAVGMATNIP HNL EV++ C+A+IDN ++  + ++E 
Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNK 277
           I GPDFPT  +I GR GI+ AY TGRG I IR  + I+  +T+G +E I+V E+PYQVNK
Sbjct: 182 IPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHETTG-KETIIVHELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EK+AELV++KR+  I+ LRDESD+ G R+VIE+KRG   +V+LN LY+ T +Q  F
Sbjct: 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSF 300

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
            +NMVAL   +P+ F +  +L+AFV  R EVV RRT + L KARDRAH+L GL+IA+AN+
Sbjct: 301 GLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANI 360

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS---------YTIGSDGTMY 448
           D ++ +I+ S N + +  +L+ + W   ++ +++    + +         Y I  DG  Y
Sbjct: 361 DPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGI-RDGLYY 419

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+  Q +AI++L+L +L+G+  D I +E  +L   I E + IL++ +RL+ +I +EL+++
Sbjct: 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAI 479

Query: 509 KDELDTPRRTRI 520
           +DE    RRT I
Sbjct: 480 RDEFGDERRTEI 491


>gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
 gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
          Length = 817

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 299/840 (35%), Positives = 488/840 (58%), Gaps = 50/840 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E   + I+ +++KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEIILMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804


>gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
 gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
          Length = 764

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 297/729 (40%), Positives = 428/729 (58%), Gaps = 66/729 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +E++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M  MG+   K +VK A
Sbjct: 3   IIEVPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G V+G YHPHG+ A+YDAL RMAQD+++   LI GQGNFGSVDGDPPAA RYTE +L
Sbjct: 63  RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAKL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+D+ K+TVDF PN+DGS +EP VL +++PN+L NG  GIAVG+AT+IP HNL
Sbjct: 123 SRYALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV    + +  NP +    +M II+GPDFPTG ++     +   Y  GRG + IR  +H
Sbjct: 183 SEVCKAVIELAKNPHMTTQEIMRIIKGPDFPTGGIVENYQELLEFYEKGRGQVRIRAKAH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +EK +G REQIVVTEIPYQVNKA ++++IAELVR+ R+ +I+D+RDESD++G R+VIELK
Sbjct: 243 VEKVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R AS + +L +LY+ T+L+  F +N V L   +P +  +  +L+ F+  R EV++RR++Y
Sbjct: 303 RDASGEKVLEKLYKLTALRKNFPINFVVLIDGEPRQVGIKTLLQEFIRHRLEVILRRSRY 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL KA +R H++ GL  A+ANLD V+  IR S +   AR +L ++               
Sbjct: 363 LLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKKYG------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+ +Q  A+L++RL RLT L R+ +  E   L  +++    ++ S  
Sbjct: 410 -------------LTPLQAEAVLDMRLQRLTSLERNKLEEEERGLRQKVEYYRRVIGSED 456

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             + I+ +E+  +   L + RRT  VEGL   E ED      + V +   G +  +P   
Sbjct: 457 ERVRILIEEMEELIRTLPSVRRT-FVEGL---EGEDKT--GSITVVIYQNGRI--LP--- 505

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
                        V   +E  V ++  V     +   SS G VY    W   IG  QA  
Sbjct: 506 -------------VTSMEEGVVVNILEVPYDDGLFLVSSKGRVY----W---IGGSQALQ 545

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            + I++    QGE +  +  F   ++S     +V AT  G +++  L DF +    G   
Sbjct: 546 GSRIDL--KEQGEYV--VGAFVRSQASDR---LVLATAMGYIKKIPLVDF-EYRAQGMPI 597

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +KL   DEI+ +    +E D+LL T  G+ +RFP+  +   AG  S GV GI L   D+V
Sbjct: 598 IKLAEGDEIVRLLQSPEEGDLLLYTHRGRVLRFPVKDVPP-AGVGSKGVVGIKLEDKDRV 656

Query: 736 ISMAIVLHA 744
           + +  +L A
Sbjct: 657 VGVKAILGA 665


>gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
 gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
          Length = 816

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQITIDPTDFPIGDRTSNGSFAMD 796

Query: 832 VSKINEI 838
             K  E+
Sbjct: 797 EKKGGEV 803


>gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 473

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/494 (50%), Positives = 345/494 (69%), Gaps = 26/494 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQ 503
           +L+S + +  IIK+
Sbjct: 456 VLASDAMVKEIIKK 469


>gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
 gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
          Length = 1340

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 304/780 (38%), Positives = 451/780 (57%), Gaps = 92/780 (11%)

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            S+DGDP AA RYTE RL   A  LL D+ K+TVDFR N+DGS++EP VL    PN+L+NG
Sbjct: 629  SIDGDPAAAMRYTEARLSTIAEELLFDIDKNTVDFRDNFDGSYREPSVLPGLLPNLLLNG 688

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GIAVGMATNIP HNL E+ D  + +IDNP++ ++ L++II GPDFPT   ILG  GI 
Sbjct: 689  AAGIAVGMATNIPPHNLKELCDAIIYLIDNPEVTVEELIKIIPGPDFPTAGNILGTEGIL 748

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             AY TGRG I +R  +HIE+ +     IVVTE+PYQVNKA + E+IAEL ++K+I  I D
Sbjct: 749  AAYGTGRGQITLRAKAHIEEANRGAFNIVVTELPYQVNKARLQERIAELAKDKKIEGIRD 808

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIG 356
            +RDESDR G R+VI LK+ A    +LN LY++T +Q+ F +NM+AL   G +P+  TL  
Sbjct: 809  VRDESDRAGMRLVILLKQDAQPKRVLNALYKHTQMQTTFGINMLALVDQGRQPKVLTLKR 868

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            +L+ +VA R+EV+ RRT+Y L KAR RAH+L GL IA+ N+D ++R IR S + E AR  
Sbjct: 869  MLQEYVAHRQEVIRRRTEYDLEKARARAHILEGLKIALDNIDAIIRTIRESRSVEIARNN 928

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            L+                  S+++        LSE+Q +AIL+++L RL  L R  I +E
Sbjct: 929  LI------------------SNFS--------LSEIQAQAILDMQLRRLAALERKKIEDE 962

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVR 535
               +   I E  DIL++  R+L +I+Q+L  +K++    RRTRI+ +   ++ DED I  
Sbjct: 963  YAEVIKLIAELEDILANPRRVLQMIQQDLQRLKEKYGDERRTRIIPDASGEVSDEDLIPD 1022

Query: 536  EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              +++T++  GYVKR    VYR QRRGG+G   +  R++D V  L    +H ++LFF+  
Sbjct: 1023 VRVLITLTDRGYVKRQATDVYRTQRRGGRGVRAMTTREQDLVRHLLTCGSHDNLLFFTDK 1082

Query: 596  GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            G VY+ K   +P  +  A+G  L+N++SL+ GE++T+++  P+    ++  Y+V AT  G
Sbjct: 1083 GKVYQLKAHEVPDSARTAKGLPLVNLISLDPGEQVTSMLAVPD----YDGEYLVMATHRG 1138

Query: 656  NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++R +LS++ Q+  +G IA+ L+  D +  V       D+L+TT  GQ +RF   A+R 
Sbjct: 1139 KIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMTTVKGQTIRFQQQAVRS 1198

Query: 716  FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              GR + GV GI+L++GD+VISM + +  D+D                            
Sbjct: 1199 M-GRPATGVNGINLSEGDRVISMELAI-PDSD---------------------------- 1228

Query: 776  KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                    +L V+ +GFGKRT   D+    R+  G+    +   
Sbjct: 1229 ------------------------LLVVTARGFGKRTELGDYPTKGRATGGVITIRLRPG 1264

Query: 836  NEI-GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +E+ GA +    VN    +  V+  G ++R    EI   SRAT+GV + +    +RV ++
Sbjct: 1265 DEVAGAAI----VNQRSLLTFVTAAGVVMRTSAGEISQLSRATQGVTVVNPDDGDRVAAL 1320



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 84/108 (77%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSIT EM+ +YL+YA++VI+ RA+PD RDG+KPV RRI++GM  MG   N  Y K A
Sbjct: 6   VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           RI G+V+GK HPHG++++YDALAR+AQ W++R  LI+GQGNFG   GD
Sbjct: 66  RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGD 113


>gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 834

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/731 (39%), Positives = 433/731 (59%), Gaps = 40/731 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   QEKERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ R +QDW +R LL++  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ KDTVDF  N+D S +EPVVL +R+PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  +++PD  +D LM+ I+GPDFPTG  I G  G+K AY TG+G IV+
Sbjct: 182 PPHHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G ++QIV+TEIPY+VNKA +++++ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RGKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A +  IL+ LY+ T LQ  ++ NMVA+    P+   L  +L+A++  ++EVV 
Sbjct: 302 VVELKKEADSKGILHYLYKNTDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA++RAH++ GL  A++ LDEV++ IR S                  D KD 
Sbjct: 362 RRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRAS-----------------KDKKDA 404

Query: 431 IDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            D + D          MY  +E Q  AI+ L+L RLT      +  E + L   I++   
Sbjct: 405 KDRLQD----------MYQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLIEKLEA 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGY 547
           ILSS   L+  IK+EL  +K +    RRT I + + D++   E  I  ED+ VTV+  GY
Sbjct: 455 ILSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR  L  Y A      G     M++ D +     ++T  ++L F+  G      V +LP
Sbjct: 515 VKRSSLRSYAASNGEPPG-----MKETDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLP 569

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-I 666
               +  G+ + N+++++  + I T +P  E   S    YV+FATK G V++  LS++  
Sbjct: 570 EIRWKDSGQHVANLVAMDNDDDILTAIPVKEFNDSE---YVLFATKLGMVKKTVLSEYKA 626

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           Q N    +A+KL   DE++SV      +DI   T  G  + F    +    G+ + GV+ 
Sbjct: 627 QRNSKALMAVKLKKDDEVISVTLSDGTHDIFFATHTGYGLWFTEEEVSA-TGQRTAGVKA 685

Query: 727 ISLAKGDQVIS 737
           I+L K D V+S
Sbjct: 686 INLKKDDFVVS 696



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 16/121 (13%)

Query: 758 MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFIL-------TVSEKGFG 809
           +S+++ LI+    E+  +K   +     + E+  ++LK+  + ++       TV+++G+ 
Sbjct: 456 LSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYV 515

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KR+S   +  SN    G++ TD         L+    +N  D ++L + KG+ + +PV++
Sbjct: 516 KRSSLRSYAASNGEPPGMKETD--------RLLYSLEINTTDTLLLFTRKGSFLFLPVHQ 567

Query: 870 I 870
           +
Sbjct: 568 L 568


>gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
 gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
          Length = 816

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796

Query: 832 VSKINEI 838
             K  E+
Sbjct: 797 EKKGGEV 803


>gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
 gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
          Length = 873

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 295/785 (37%), Positives = 441/785 (56%), Gaps = 93/785 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + S+  EMQ SYL YA++VI+GRA+PD+RDG KPVHRRI++ M ++G+  ++ + KCA
Sbjct: 12  VITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPFRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDA+ RM Q++S R  L++G GNFGS+D DP AA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRYTESRL 131

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +  LL  + +  VDF  N+DGS QEP VL A+ P +L+NG  GIAVGMATN+P HN
Sbjct: 132 ASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNVPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+IDNP+I    L E+I GPDFPTG  I+   GI + Y  GRGSI +RGV+
Sbjct: 192 LGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGSIPMRGVA 251

Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE+    R +     IVVTE+P+QVNKA  +EK A+LV   +I  IADLRDESDR G R
Sbjct: 252 TIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDRSGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A   V+L+ LYR T L S F   M+AL   +P++ +L  +L+ F+ FREE +
Sbjct: 312 VVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFLNFREETL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R   + L  A+ R+H++ GL  A+  LD V+ I+R +P+  TA+    +          
Sbjct: 372 TRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQE---------- 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           ++ LSE Q  AIL + + RLTGL +  +  E   L  +I+E  +
Sbjct: 422 ----------------SLGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELEN 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL------------------------L 525
           +L  R +LL  +K+EL ++K + + PRRTRI++ +                        +
Sbjct: 466 LLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKEI 525

Query: 526 DMEDEDCIVR--------------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           D++ +  +++                    E +V+  SH GYV+R+P   +   +   K 
Sbjct: 526 DIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKK- 584

Query: 566 RSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA------RGKAL 618
            S + M + EDF T++   +T  +++  +  G  Y  KV  +P  S ++      +G  L
Sbjct: 585 -SHITMENSEDFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPL 643

Query: 619 INILSLNQGERIT------TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + +L  +  + IT       I  F  +E+  N   ++  T++G ++R  LSD   +   G
Sbjct: 644 VTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIML-TQNGKIKRLCLSDLSDMRNRG 702

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAK 731
              +KL   DE+  V        ++L T  G+ +R  I   ++   GR + G +   L K
Sbjct: 703 VTVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRK 762

Query: 732 GDQVI 736
            ++++
Sbjct: 763 QEELV 767


>gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
 gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
          Length = 876

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 322/906 (35%), Positives = 479/906 (52%), Gaps = 141/906 (15%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 12  VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +  LL  +G+ TVDF  N+D S QEP VL A+ P +++NG  GIAVGMATNIP HN
Sbjct: 132 AAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+ID+PD+    LM++I GPDFPTG  I+   GI  AY +GRGSIV+RGV+
Sbjct: 192 LGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVATAGIAEAYTSGRGSIVMRGVA 251

Query: 255 HIEK--TSG---DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE+  T+G    +  IVVTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G R
Sbjct: 252 KIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGISDIRDESDREGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+ +V+L+ LY++T L S F    +AL   +P + +L  IL+ F+ FRE+ +
Sbjct: 312 VVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILQEFLGFREQTL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR +  L  A  RA ++ GL  A+A LDEV+ I+R +P+  +A+  L  R         
Sbjct: 372 LRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKISLETR--------- 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +DL  +                Q   IL + L RLT L    ++ E   L  +I     
Sbjct: 423 -LDLTGE----------------QADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLRL 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-----------------LLDMEDEDC 532
           +LS R+ LL  +K+EL S+K     PRRTRIV                         +  
Sbjct: 466 LLSERAELLKSLKKELRSLKRRYSDPRRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKSK 525

Query: 533 IVR------EDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           I+R      E+ +V ++  GYV+RV P ++ R Q R        +   +DF    ++ +T
Sbjct: 526 ILRPQLPAVEETLVEMTLKGYVRRVTPSALSRPQSR----EDITIEAIDDFPVASYLTTT 581

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-------------------Q 626
             +++  + +G  Y   V  +P  S ++RG  LI +LS +                    
Sbjct: 582 AETLVIINRMGKAYPLSVADIPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGA 641

Query: 627 GERITTIMPFPEDESSWNNLY-----VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
           G + + +    +  +S  + +     ++  +  G ++R   +DF+ ++  G   MKL   
Sbjct: 642 GLQSSPLRRTTDGGTSPKSAFSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDN 701

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAI 740
           DE+         + ++L T  G+ +R  I++ ++   GR + G     L K +Q++   I
Sbjct: 702 DELSYANLAATGDQVVLATSGGRLLRLDINSEQIPVMGRTAQGSVATRLRKNEQLVG-CI 760

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            L +  +                                               L  QFI
Sbjct: 761 TLSSTGE-----------------------------------------------LNNQFI 773

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFP-------VNDNDQ 852
           L VSE+G+ KR S    + S R G G +     ++ +    L A+ P        ++N  
Sbjct: 774 LLVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHTRDDACRGLAAISPGEVVYCLTSENRM 833

Query: 853 IILVSD 858
           + LV D
Sbjct: 834 VTLVPD 839


>gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
 gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
          Length = 816

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796

Query: 832 VSKINEI 838
             K  E+
Sbjct: 797 EKKGGEV 803


>gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10]
 gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 281/734 (38%), Positives = 438/734 (59%), Gaps = 40/734 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+++    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   EQKERYLDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ R +QDW +R +L++  GN GSVDGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVDF PN+D S +EPVVL   YPN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  +D+PD  +  L+  I+GPDFPTG +I G  G++ AY +G+G +V+
Sbjct: 182 PPHHLGEVIDAAIHQMDHPDCSVHDLLTYIQGPDFPTGGIIQGIEGLQKAYESGKGKVVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + ++   G++EQI++TEIPY++NKA +++K+ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RGKAEVQAIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A +  IL+ LY+ T LQ  +  NMVA++   P+   L  +L A++  ++EVV 
Sbjct: 302 VIELKKEADSQGILHFLYKNTDLQVSYHFNMVAIHNKTPKLMGLKQMLDAYIQHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKARDRAH++ GL  A++ LDEV+  IR S + + A+  L             
Sbjct: 362 RRTNFDLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRLQ------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                 +SY          +E Q+ AI+ L+L RLT      +  E   L   IK+   I
Sbjct: 410 ------ASYQ--------FTEPQSEAIVNLQLYRLTNTDITTLEKEAGELRELIKKLEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           L S   L+  IK+EL  +K      RRT +   + D++   E  +  E++ V+V+  GYV
Sbjct: 456 LESEKNLIKEIKKELRYIKKTYTDERRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A    G+  S   M++ D +     V+T  ++LFF+  G      V +LP 
Sbjct: 516 KRSSIRSYTAS--NGEEPS---MKETDRLIHDLEVNTTDTLLFFTKKGSYLFVPVHQLPE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDF-I 666
              +  G+ + NI++++Q + I   +P  E  E  W    ++FATK G V+R+ L D+  
Sbjct: 571 TKWKDGGQHIANIVTMDQDDPIIHAIPVQEFREDRW----LLFATKSGMVKRSVLKDYHA 626

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           Q +     A+KL + DE+++V     E ++ L TK G  + F    + V  G+ + GV+G
Sbjct: 627 QRHSKALTALKLKTDDELINVYLTNGEENLFLATKKGYGLWFSEEEVSV-TGQRTAGVKG 685

Query: 727 ISLAKGDQVISMAI 740
           I+L +GDQ+ ++++
Sbjct: 686 INLKEGDQLAALSV 699


>gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
 gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
          Length = 817

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 797

Query: 832 VSKINEI 838
             K  E+
Sbjct: 798 EKKGGEV 804


>gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
 gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
          Length = 819

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 312/876 (35%), Positives = 484/876 (55%), Gaps = 90/876 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A  LL D+ K TV
Sbjct: 83  SIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMELLRDIEKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL EV+D C+AV+  P+I
Sbjct: 143 LFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVMQKPEI 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +LD +M  I+GPDFPTG +I+G  GI +AY TG+G + +R  + IE   G ++QIV+TEI
Sbjct: 203 ELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRSKTDIESLRGGKQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+ELK+ A A+ IL  L++ T
Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADANGILAYLFKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P++  L  +L A++  + EVV  RT++ L KA DRAHVL GL 
Sbjct: 323 DLQITYNFNMVAIVNKTPQQLGLKAMLSAYIHHQREVVTHRTQFELEKAEDRAHVLEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDEV+  I+ S N + A+  L    W                           +E
Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  +IL L+L RLT L    ++ EL+ L  +I+    IL S  +L+G+I++EL+ ++++
Sbjct: 417 RQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREK 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E +  + +  E  +  ED++VT+S+ GY+KR   S+    R GG+  S  
Sbjct: 477 YGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT--SMLSFTRSGGELESSG 534

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
           V ++ D++T LF V+T  ++L F+S G  +   V ++P    +  G A++N++ + + + 
Sbjct: 535 V-KEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDH 593

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I +++P    + +  +L  VF ++ G V+R  L +++        A K+ + D I+ V  
Sbjct: 594 IVSVIPVSNFDEAGKSL--VFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVM 651

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                DI+L +K G  +RF    +    GR S GVRGI L  GD+V++   V        
Sbjct: 652 SDSNKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLRDGDEVVAALWV-------- 702

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                     +ND   EG                ILT+++ G+G
Sbjct: 703 --------------------------END---EGE---------------ILTITDLGYG 718

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIRV 865
           KR+   D+   +R GKG+   +  +   +     A+V  F   +  QI   S+ G    +
Sbjct: 719 KRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPI 778

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              ++ IA R + G ++    K+ ++V +  +  +E
Sbjct: 779 HTEKVPIAERKSIGKLLADVGKNGQIVDLVSLPHAE 814


>gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551]
 gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551]
          Length = 808

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 306/839 (36%), Positives = 468/839 (55%), Gaps = 56/839 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K + K A+  
Sbjct: 10  LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRKSAKTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++YDA+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYTE RL   
Sbjct: 70  GNVIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K TV+F  N+D +  EP VL A +PN+LVNG  GI+ G AT +P H+LGEV
Sbjct: 130 AAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPHHLGEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P   ++ LM  I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 190 IDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKTEVES 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIP++VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 250 IRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVVELKKDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A  +L+ LY+ T LQ  ++ NMVA+   +P+  +L  IL A++  + EVV  R+KY L 
Sbjct: 310 NAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTNRSKYELQ 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R H++ GL  A++ LDEV+  IR S +   A+  L+ +                  
Sbjct: 370 KAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E   LG +I E  +IL S  +L 
Sbjct: 412 --------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLF 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+EL  VK +  T RR++I   + +++   E  +  E+++VTV+  GYVKR  L  Y
Sbjct: 464 NVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M+D D +   + ++T  ++L F++ G      V  LP    +  G+
Sbjct: 524 AASNGQDFG-----MKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQ 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
            ++NI+ +++ E+I   +P  E +    N Y++F TK+G V++++L  + +  R  K  +
Sbjct: 579 HIMNIVPIDKEEQIVRAIPVKEFKE---NQYLLFFTKNGMVKKSELLQY-KAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     +  + + T+ G  +RF    I +   R S GV+GI+L   D 
Sbjct: 635 AVNLKGDDEVVDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTRAS-GVKGINLKDDDY 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVEGNISEERC 790
           V+S  I      D DE +     ++ QR  +      + EE    K    +   +     
Sbjct: 694 VVSGVIF-----DEDEALSTELFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH 748

Query: 791 QELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           Q  K+    KE +++  S KG  ++      R S+R   G    D S   E G LV V+
Sbjct: 749 QIAKVKAISKEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQS---EAGNLVDVW 804



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ++TV++ G+ KRTS   +  SN    G++ TD         ++A + +N  + +++ 
Sbjct: 503 EEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDTD--------RILAKYEINTTETLLIF 554

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG  + +PV+E   IR        + I    K+E++V    ++E
Sbjct: 555 TNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKE 600


>gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2]
 gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580]
 gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2]
          Length = 807

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 308/873 (35%), Positives = 476/873 (54%), Gaps = 104/873 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  
Sbjct: 10  LPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAKTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   
Sbjct: 70  GNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLAAI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV
Sbjct: 130 ASELLRDIDKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID+P+  +D LME ++GPDFPTG +I G+ GIK AY TG+G I+IRG + IE 
Sbjct: 190 IDAVIKRIDSPNCSVDDLMEFVKGPDFPTGGIIQGKEGIKKAYETGKGKIIIRGKAEIET 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G R+QIV+TEIP++VNKA +++K+ E   E+++  I+++RDE+DR G R+VIELK+ A
Sbjct: 250 IRGGRQQIVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELKKEA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  ILN LY+ T LQ  ++ NMVA++  +P    L  IL A++  ++EV+  R++Y L 
Sbjct: 310 DAQGILNFLYKNTDLQIPYNFNMVAIHNRRPMLMNLTSILDAYIGHQKEVITNRSQYELK 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA++R H++ GL  A++ LDEV+  IR S +   A+  L+++                  
Sbjct: 370 KAKERHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEK------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E   L  +IKE  +ILS+  +LL
Sbjct: 412 --------FAFTEPQAEAIVSLQLYRLTNTDITALQEEAKELDQKIKELEEILSNDKKLL 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK  L  VK    + RR+ I E + +++   E  +  ED+ VTV+  GY+KR     +
Sbjct: 464 KVIKDSLKKVKKTYASQRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYIKRTSQRSF 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M+D D +     ++T   +L F++ G      V +LP    +  G+
Sbjct: 524 AASNGQDFG-----MKDTDRLLCQLEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDLGQ 578

Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            + NI+S++  E I   +P   F E E      Y++F TK+G  +R +L  + +  R  K
Sbjct: 579 HITNIISIDSDESIVKAIPVREFTESE------YLLFFTKNGMAKRTQLMQY-KAQRYSK 631

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +A+ L   DE++ V       D+ + T  G  + F    + V   R + GV+G++L  
Sbjct: 632 ALVALNLKGDDEVVDVHVTDGTKDLFIATHSGYGLWFTEDEVSVVGAR-AAGVKGVNLKD 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V S                                             G + EE+  
Sbjct: 691 GDFVAS---------------------------------------------GQVLEEK-- 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD--VSKINEIGALVAVFPVND 849
                   ++ V+++G  KR +  +F  ++R+ +G+        K + I  L+A    + 
Sbjct: 704 ------DVLVLVTQRGSIKRMNRSEFEKTSRAKRGVLMLRELKKKPHRIAGLLA---CSY 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +DQI L ++KG    + V EI++  R + G  I
Sbjct: 755 HDQITLQTEKGITEEMLVKEIKLHDRYSNGSFI 787



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E   +TV++ G+ KRTS   F  SN    G++ TD         L+    +N  D ++L 
Sbjct: 503 EDVYVTVTKDGYIKRTSQRSFAASNGQDFGMKDTD--------RLLCQLEMNTTDVLLLF 554

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG+ +  PV++   IR          I S   DE +V    +RE
Sbjct: 555 TNKGSYVYCPVHQLPDIRWKDLGQHITNIISIDSDESIVKAIPVRE 600


>gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
 gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
          Length = 806

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 306/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  ID+PD 
Sbjct: 143 EFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIDSPDC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME+I+GPDFPTG +I G  GI+ AY TG+G +++RG + +E   G REQIV+TEI
Sbjct: 203 TVTELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKVIVRGKAEVETIRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   +L  IL A++A ++EVV  R+ Y L KA+DR H++ GL 
Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLTAILDAYIAHQKEVVTNRSIYELQKAKDRHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 383 KALSILDEVIATIRSSNDKRDAKNNLISK--------------------------FEFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L   I+E   IL++  +LL +I   L  +K  
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKNIQELESILNNDKKLLKVITSSLKKLKKT 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GY+KR     + A      G    
Sbjct: 477 YADGRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+   N++S+++ E 
Sbjct: 533 -MKDTDRLLHQFEMNTTDVLLMFTNKGSYIYCPVHQLPDIRWKDMGQHFTNMISIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E + S    Y++F TK+G V++ +L+ + +  R  K  +A+ +   DE+  V
Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNVKGDDELTDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                E+ + + T LG  + F    + V   R + GV+GI+L +GD V+S  I+  AD+ 
Sbjct: 648 HVTNGESQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEGDFVVSGQILHEADS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               ++  +++G
Sbjct: 706 ----------------------------------------------------LVLATQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR S  +F  ++R+ +G+      K N   A VAVF     D+++  ++KG    + V
Sbjct: 714 AVKRMSLSEFDKTSRAKRGVIMLRELKKNPHRA-VAVFACRLTDRLMFETEKGETKELLV 772

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            E+R   R + G  +    +  +V++  R+ + E
Sbjct: 773 KELRTNDRYSNGSFLIDEEEAGKVIAAWRLEKEE 806


>gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
 gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
          Length = 816

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796

Query: 832 VSKINEI 838
             K  E+
Sbjct: 797 EKKGGEV 803


>gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
 gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
          Length = 816

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796

Query: 832 VSKINEI 838
             K  E+
Sbjct: 797 EKKGGEV 803


>gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
 gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
          Length = 817

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 797

Query: 832 VSKINEI 838
             K  E+
Sbjct: 798 EKKGGEV 804


>gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
 gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
          Length = 817

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 797

Query: 832 VSKINEI 838
             K  E+
Sbjct: 798 EKKGGEV 804


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 261/509 (51%), Positives = 344/509 (67%), Gaps = 27/509 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 244 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 303

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 304 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 363

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 364 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 423

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 424 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 483

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 484 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 543

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 544 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 603

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 604 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 649

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 650 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 697

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523
             LL +++ EL  ++D     RRT I  G
Sbjct: 698 EVLLQLVRDELTEIRDRFGDDRRTEIQLG 726


>gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
 gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
          Length = 816

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +          SE R +E+ L       +++KG        DF I +R+  G  A D
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796

Query: 832 VSKINEI 838
             K  E+
Sbjct: 797 EKKGGEV 803


>gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
 gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
          Length = 817

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 300/842 (35%), Positives = 489/842 (58%), Gaps = 54/842 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVFAGR 719
            +  +S  ++ MKL +  DE+++V    +E+    D+ L T  G  +R+P++ + V  G 
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAV--YLKEDRPGLDVFLVTYQGMGLRYPLTDVPV-VGA 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   
Sbjct: 686 KAAGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGV 742

Query: 780 SVEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           +V   + +   + + + E   + I  +++KG        DF I +R+  G  A D  K  
Sbjct: 743 TVMRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGG 802

Query: 837 EI 838
           E+
Sbjct: 803 EV 804


>gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
 gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
          Length = 822

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 299/840 (35%), Positives = 486/840 (57%), Gaps = 50/840 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E   + I  +++KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803


>gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/534 (49%), Positives = 363/534 (67%), Gaps = 27/534 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 7   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 67  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 187 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 247 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 307 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM + +N      
Sbjct: 367 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 420 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTV 542
           IL+   R+L II++EL  +K +    RRT I+ G L+ +EDED I  E++ +T+
Sbjct: 461 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITL 514


>gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319]
 gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319]
          Length = 808

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 305/839 (36%), Positives = 468/839 (55%), Gaps = 56/839 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K + K A+  
Sbjct: 10  LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRKSAKTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYTE RL   
Sbjct: 70  GNVIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K TV+F  N+D +  EP VL A +PN+LVNG  GI+ G AT +P H+LGEV
Sbjct: 130 AAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPHHLGEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P   ++ LM  I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 190 IDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKTEVES 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIP++VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 250 IRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVVELKKDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A  +L+ LY+ T LQ  ++ NMVA+   +P+  +L  IL A++  + EVV  R+KY L 
Sbjct: 310 NAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTNRSKYELQ 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R H++ GL  A++ LDEV+  IR S +   A+  L+ +                  
Sbjct: 370 KAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E   LG +I E  +IL S  +L 
Sbjct: 412 --------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLF 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+EL  VK +  T RR++I   + +++   E  +  E+++VTV+  GYVKR  L  Y
Sbjct: 464 NVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M+D D +   + ++T  ++L F++ G      V  LP    +  G+
Sbjct: 524 AASNGQDFG-----MKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQ 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
            ++NI+ +++ E+I   +P  E +    N Y++F TK+G V++++L  + +  R  K  +
Sbjct: 579 HIMNIVPIDKEEQIVRAIPVKEFKE---NQYLLFFTKNGMVKKSELLQY-KAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     +  + + T+ G  +RF    I +   R S GV+GI+L   D 
Sbjct: 635 AVNLKGDDEVIDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTRAS-GVKGINLKDDDY 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVEGNISEERC 790
           V+S  I      D DE +     ++ QR  +      + EE    K    +   +     
Sbjct: 694 VVSGVIF-----DEDEALSTELFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH 748

Query: 791 QELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           Q  K+    KE +++  S KG  ++      R S+R   G    D S   E G LV V+
Sbjct: 749 QIAKVKAISKEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQS---EAGNLVDVW 804



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ++TV++ G+ KRTS   +  SN    G++ TD         ++A + +N  + +++ 
Sbjct: 503 EEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDTD--------RILAKYEINTTETLLIF 554

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG  + +PV+E   IR        + I    K+E++V    ++E
Sbjct: 555 TNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKE 600


>gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
 gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
          Length = 868

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 325/947 (34%), Positives = 473/947 (49%), Gaps = 161/947 (17%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 12  VISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL RM Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               H  +L  +G+ TVDF  N+D S QEP VL A  P +L+NG  GIAVGMATNIP HN
Sbjct: 132 ASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIAVGMATNIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDG +A+ID PD+  + L+ +I GPDFPTG  I+   GI +AY  G+GSI +RGV+
Sbjct: 192 LNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEIISTEGITDAYTKGKGSIAVRGVT 251

Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+    R       IVVTE P+QVNKA  +EK+AELV + RI  I+DLRDESDR+G R
Sbjct: 252 RMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGISDLRDESDREGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+KR  S   +L++LY  T LQ  F   ++AL   +P + TL  +L+ F+ FRE  +
Sbjct: 312 VVIEIKREFSPQTVLSRLYHQTDLQCNFGAILLALVNGQPRQLTLRQMLQEFLNFREVTL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  + L  A  R H++ GL + + NLD  + I+R +P+  TA++ L  R         
Sbjct: 372 TRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQGLQSR--------- 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            +  SE Q  AIL + + RLTGL R +++ E + L   I+E   
Sbjct: 423 -----------------LNFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQR 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-------------------------EG- 523
           +L  R  LL  +K+EL S+K +   PRRTR+V                         EG 
Sbjct: 466 LLGDRRELLKALKKELRSLKRKYGDPRRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGR 525

Query: 524 ------------------LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY--------R 557
                              L +        E  V+  +H  YV+R+  +           
Sbjct: 526 GSRGAGEQRGGEGKKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKS 585

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ RGG         + DF  +     T+ ++   +  G  Y  K+  +P    + RG  
Sbjct: 586 AQSRGG---------ESDFSVNTIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTP 636

Query: 618 LINILSL---------NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           +I++LS          N  E +  +    E+  + +   +V  T+ G ++R  LS+   I
Sbjct: 637 IISLLSPSATKDVAPGNLPEIVAGMFVLSENADATD---LVTLTQQGKIKRLPLSELSDI 693

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
              G  A+KL   DE+           ++L T  G+ +RF ++  ++   GR + G +  
Sbjct: 694 TNRGVTAVKLKDDDELRYAMLSKPGEQVVLATSGGRLLRFELNDEQLPPMGRAAQGSQAT 753

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K +Q++   I L AD                                          
Sbjct: 754 RLRKQEQLVG-CITLAADGS---------------------------------------- 772

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+ KR      R++ R   G +A   ++  +  ALV +   
Sbjct: 773 ------------LLLVSELGWAKRMPVGSVRLTGRGEIGTQAFHFAEPKD--ALVGIVAA 818

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               ++ L+++ G L+RV V +I    +   G    +    E++V V
Sbjct: 819 LPRKELKLLTNNGRLLRVGVEKIAFWGKDAPGDRAVNLNPSEKIVKV 865


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/509 (51%), Positives = 344/509 (67%), Gaps = 27/509 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 210 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 269

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R+TE R+
Sbjct: 270 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARM 329

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 330 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 389

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 390 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 449

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 450 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 509

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 510 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 569

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 570 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 615

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 616 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 663

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523
             LL +++ EL  ++D     RRT I  G
Sbjct: 664 EVLLQLVRDELTEIRDRFGDDRRTEIQLG 692


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/509 (51%), Positives = 344/509 (67%), Gaps = 27/509 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 244 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 303

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R+TE R+
Sbjct: 304 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARM 363

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATNIP HNL
Sbjct: 364 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 423

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI +R  + 
Sbjct: 424 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 483

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G RVVI++
Sbjct: 484 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 543

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV RRT+
Sbjct: 544 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 603

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR              
Sbjct: 604 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 649

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL RD I  E N L   I E   IL+  
Sbjct: 650 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 697

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523
             LL +++ EL  ++D     RRT I  G
Sbjct: 698 EVLLQLVRDELTEIRDRFGDDRRTEIQLG 726


>gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10]
 gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10]
          Length = 819

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 312/881 (35%), Positives = 485/881 (55%), Gaps = 90/881 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A  LL D+ K TV
Sbjct: 83  SIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMELLRDIEKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL EV+D C+AV+  P+I
Sbjct: 143 LFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVMQKPEI 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +LD +M  I+GPDFPTG +I+G  GI +AY TG+G + +R  + IE   G ++QIV+TEI
Sbjct: 203 ELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRSKTVIESLRGGKQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+ELK+ A A+ IL  L++ T
Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADANGILAYLFKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P++  L  +L A++  + EVV  RT++ L KA DRAHVL GL 
Sbjct: 323 DLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVTHRTQFELEKAEDRAHVLEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDEV+  I+ S N + A+  L    W                           +E
Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  +IL L+L RLT L    ++ EL+ L  +I+    IL S  +L+G+I++EL+ ++++
Sbjct: 417 RQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREK 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E +  + +  E  +  ED++VT+S+ GY+KR   S+    R GG+  S  
Sbjct: 477 YGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT--SMLSFTRSGGELESSG 534

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
           V ++ D++T LF V+T  ++L F+S G  +   V ++P    +  G A++N++ + + + 
Sbjct: 535 V-KEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDH 593

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I +++P    + +  +L  VF ++ G V+R  L +++        A K+ + D I+ V  
Sbjct: 594 IVSVIPVSNFDEAGKSL--VFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVM 651

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                DI+L +K G  +RF    +    GR S GVRGI L  GD+V++   V        
Sbjct: 652 SDSNKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLRDGDEVVAALWV-------- 702

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                     +ND   EG                ILT+++ G+G
Sbjct: 703 --------------------------END---EGE---------------ILTITDLGYG 718

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIRV 865
           KR+   D+   +R GKG+   +  +   +     A+V  F   +  QI   S+ G    +
Sbjct: 719 KRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPI 778

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
              ++ I  R + G ++    K+ ++V +  +  +E+  E 
Sbjct: 779 HTEKVPIMERKSIGKLLADVGKNGQIVDLVSLPHAELGKEG 819


>gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208]
 gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 807

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 309/877 (35%), Positives = 477/877 (54%), Gaps = 98/877 (11%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I++PD 
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIESPDC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IRG + +E   G REQIV+TEI
Sbjct: 203 TVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVEAVRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVV+ELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  R+ + L KA++R H++ GL 
Sbjct: 323 DLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+ +IR S + + A++ L+ +                             +E
Sbjct: 383 KALSVLDEVIAVIRASSDKKDAKQNLISK--------------------------FSFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I+E   ILS   +LL +I   L  +K  
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKT 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GYVKR     + A      G    
Sbjct: 477 YADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+ + NI ++++ E 
Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E   +    Y++F TK+G V+R +++ + +  R  K  +A+ L   DE++ V
Sbjct: 592 IVKAIPVKEFNPAS---YLLFMTKNGMVKRTEMTHY-KAQRYSKALVALNLKGDDELVDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                   + + T LG  + F    + V   R + GV+GI+L  GD V+S  I+   D+ 
Sbjct: 648 HVTDGGCQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKDGDTVVSGQILHETDS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               ++ V+++G
Sbjct: 706 ----------------------------------------------------LVLVTQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR +  +F  ++R+ +G+      K N    +V VF     D I   ++KG  I   V
Sbjct: 714 AIKRMNLSEFEKTSRAKRGVIMLRELKKNP-HRVVGVFACALADTIAAETEKGERIETTV 772

Query: 868 NEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902
             +R   R + G   F T +DE   V  V RI  S++
Sbjct: 773 KSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807


>gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
 gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
          Length = 814

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 308/884 (34%), Positives = 472/884 (53%), Gaps = 93/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   LLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPFRKAA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H L
Sbjct: 125 SAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +  ID PD  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  + 
Sbjct: 185 GEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAA 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++ IV+TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIELK
Sbjct: 245 IEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R+EVV  R+ +
Sbjct: 305 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRSHF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM                 
Sbjct: 365 ELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYG------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +R E   L   I E   IL+   
Sbjct: 412 -------------FTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEK 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           +LLG+IK+EL ++K +    RRT I E +  L ++ E  I  ED++VTV+  GYVKR   
Sbjct: 459 KLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSY 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G     M++ D +     ++T   +L F+  G+     V  LP    + 
Sbjct: 519 RSYSASNGQDMG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ + +++ L + + +   +P     SS+N    +VF TK G V+R +L+ + Q+ R  
Sbjct: 574 VGQHISHLIPLERDDELVAAVPV----SSFNTGEQLVFVTKQGLVKRTELAQY-QVQRYT 628

Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +  +A+ +   D++++V        + L T  G  + F    I    G  + GV+GI L 
Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEIS-LVGVRAAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V +   V                     RL  G +                     
Sbjct: 688 EGDFVAAACPV---------------------RLEEGSS--------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     + V+++G  K+ +  +F  S+R+ +G+      K N    + AVF  +D 
Sbjct: 706 ---------FVVVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPHRVVGAVFVSSDE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + + L ++KG +  +    +R++ R + G  +  T +   VV V
Sbjct: 757 EMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGPVVDV 800


>gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 448

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/470 (51%), Positives = 334/470 (71%), Gaps = 26/470 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 3   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 63  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 243 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 303 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 363 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG----- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                LSE Q +AIL++RL RLTGL R+ I   +
Sbjct: 418 ---------------------LSEKQAQAILDMRLQRLTGLEREKIEQNI 446


>gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 825

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 293/737 (39%), Positives = 437/737 (59%), Gaps = 48/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+   M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A
Sbjct: 6   IETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  L+E  GN GS+DGDP AA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +I +PD  L+ LME I GPDFPTG ++ G  GIK AY TGRG IV+R  + 
Sbjct: 186 GEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGGIVQGADGIKKAYQTGRGRIVVRAKTE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G R+QI VTEIPY+VNKA ++++I +L   K++  I + RDE+DR G R+ IELK
Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++AF++EVV RRT Y
Sbjct: 306 RNANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKHILTSYLAFQKEVVRRRTSY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ R H++ GL  A++ LD+V++ IR S N + A++                +LID
Sbjct: 366 NLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQ----------------NLID 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             ++T          +VQ  AI+ L+L RLT     ++ +E   L   I E   ILS   
Sbjct: 410 QYAFT----------DVQAEAIVTLQLYRLTNTDVTELEDEQQHLTDLIDEYQLILSDDE 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++++E+ +VK E   PRRT+I   +  L+++ +  +  ED+VV VSH GY+KR  +
Sbjct: 460 ELSKVVRREMQAVKKEFGNPRRTQIENQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSI 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT--SVLFFSSLGFVYKEKVWRLPIGSP 611
             ++A      G     +R++D+   L I  T+T   +  F++ G V    V  L     
Sbjct: 520 RSFKASSLDEDG-----LREDDY--PLLITQTNTLAHLFMFTNRGHVIYRPVHELADVRW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ +   + L + E I   M F + +   +    +F T  G V+++   D+   +R 
Sbjct: 573 KDTGEHISQTIGLAEDEEIIKAMVFDKLDLPGS---FIFGTSDGQVKQSAYKDYQPGSRY 629

Query: 671 --SGKIAMKLDSRDE-ILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGV 724
                +A+KL S+D  ++SV+    T EN  LL  ++ G  VRF ++ + V  G  + GV
Sbjct: 630 KSHASMAVKLKSKDATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPV-TGLRTAGV 688

Query: 725 RGISLAKGDQVISMAIV 741
           R I+L   D ++ + +V
Sbjct: 689 RAINLKDDDALVDLVLV 705



 Score = 38.5 bits (88), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L +S +G+  R    D  ++     G+RA +   + +  ALV +  V D  ++  ++ +
Sbjct: 661 LLAISREGYAVRFDVADVPVTGLRTAGVRAIN---LKDDDALVDLVLVKDGQRVASITQR 717

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887
           G    +P++EI + +RA +G ++    K
Sbjct: 718 GAFKEMPIDEIAVGARARRGELVLHRLK 745


>gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61]
 gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3]
 gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61]
 gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3]
 gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52]
          Length = 814

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 307/884 (34%), Positives = 472/884 (53%), Gaps = 93/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   LLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPFRKAA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H L
Sbjct: 125 SAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +  ID PD  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  + 
Sbjct: 185 GEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAA 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++ IV+TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIELK
Sbjct: 245 IEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R+EVV  R+ +
Sbjct: 305 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRSHF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM                 
Sbjct: 365 ELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYG------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +R E   L   I E   IL+   
Sbjct: 412 -------------FTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEK 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           +LLG+IK+EL ++K +    RRT I E +  L ++ E  I  ED++VTV+  GYVKR   
Sbjct: 459 KLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSY 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G     M++ D +     ++T   +L F+  G+     V  LP    + 
Sbjct: 519 RSYSASNGQDMG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ + +++ L + + +   +P     SS+N    ++F TK G V+R +L+ + Q+ R  
Sbjct: 574 VGQHISHLIPLERDDELVAAVPV----SSFNTGEQLIFVTKQGLVKRTELAQY-QVQRYT 628

Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +  +A+ +   D++++V        + L T  G  + F    I    G  + GV+GI L 
Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEIS-LVGVRAAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V +   V                     RL  G +                     
Sbjct: 688 EGDFVAAACPV---------------------RLEEGGS--------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     + V+++G  K+ +  +F  S+R+ +G+      K N    + AVF  +D 
Sbjct: 706 ---------FVVVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPHRVVGAVFVSSDE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + + L ++KG +  +    +R++ R + G  +  T +   VV V
Sbjct: 757 EMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGMVVDV 800


>gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
 gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
          Length = 816

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 302/884 (34%), Positives = 494/884 (55%), Gaps = 101/884 (11%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M + G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++YDA+ RM+Q+W +R +L++  GN GS+DGDPPAA RYTE RL K A  LL D+ K+TV
Sbjct: 83  SVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYTEARLSKIAAELLRDIDKETV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PN+D S QEPVVL A++PN+LVNG  GI+ G AT+IP H+LGEV+DG +  ++NP++
Sbjct: 143 DYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIPPHHLGEVIDGVIMQMENPNV 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            LD LM++I+GPDFPTG ++ G  GI+ AY+TG+G +V+RG + IE   G ++QIV+TEI
Sbjct: 203 TLDELMQVIKGPDFPTGGIVQGIEGIRQAYSTGKGKVVVRGKAEIEDLRGGKQQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+V KA +++K+ E+  +K++  IA++RD++DR G R+V+ELK+ A A+ IL  L++ T
Sbjct: 263 PYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIVVELKKDADANGILQYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P    L  +++A++  +++V++RR  Y L KA+DR H++ GL 
Sbjct: 323 DLQITYNFNMVAIHNKTPRLMGLKSLIQAYIDHQKDVIIRRATYDLQKAKDRQHIVQGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LD+V++ IR S + + A+  L+ +                             +E
Sbjct: 383 KAISILDDVIQTIRASKDKKNAKDNLIAQ--------------------------FDFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      +  E   L   I E   IL+S  +L+G++K+ELL++K +
Sbjct: 417 AQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAILASEKKLIGVVKKELLAIKKQ 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RRT I + + +++   +  +  ED++VTV+  GYVKR  L  Y A      G    
Sbjct: 477 FTDERRTIIKKEIEEIKITMDVLVASEDVMVTVTKEGYVKRTSLRSYAASNGELPG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M++ D++   + ++T  ++L F+  G      V +LP    +  G+ + N++++++ + 
Sbjct: 533 -MKEGDYLLGRYEMNTQDTLLLFTKKGNYLYLPVHQLPDIRWKDNGQHVANLVTVDKDDD 591

Query: 630 ITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEI 684
           I T +    F E+ES      ++F T+ G  +R++LS   +  R  K  +A+KL   DE+
Sbjct: 592 ILTTLAVKEFSEEES------LLFITRQGMAKRSQLS-LYKAQRFSKPLMALKLKDDDEV 644

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +SV   +   ++ + T  G  + F  + I    G+ + GV+GI+L   D V+        
Sbjct: 645 VSVMRTSGNEEVFIATSFGYGLWFSENEISQ-VGQRAAGVKGINLKNDDAVV-------- 695

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                     + T+   +  VE                  L V+
Sbjct: 696 --------------------------DATTFTLNDRVE-----------------FLVVT 712

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLI 863
            +G  KR S  +F  S R+ +G+      K N    +VA   ++D +D   + ++ GT++
Sbjct: 713 HRGGVKRISITEFDKSTRAKRGLVMLRELKKNP-HHIVACKRISDGSDTFFIKTEDGTIV 771

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            V  +  R + R + G  +    K   V +V   +E  ++D+ E
Sbjct: 772 TVAPSSFRRSDRYSNGSFVLDQDKTGVVTNV--WKEVSLIDDKE 813


>gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
 gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
          Length = 808

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 302/874 (34%), Positives = 470/874 (53%), Gaps = 92/874 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAFRKSAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ R++QDW +R +L+E  GN GS+DGD PAA RYTE RL   +  LL D+ K TV
Sbjct: 83  SVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYTEARLSAISSELLRDIDKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PN+D S  EP VL AR+PN+LVNG  GI+ G AT+IP H L EV+D  +  +DNP  
Sbjct: 143 DFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIPPHALHEVLDAVLMRMDNPQA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LM +I+GPDFPTG +I G  GIK AY TG+G I++R  + IE   G +EQIV+TEI
Sbjct: 203 TVAELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVRSKAEIEPLKGGKEQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA M++KI +   ++++  I+++RDESDR G R+VIELK+   A  IL+ LY+ T
Sbjct: 263 PFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIVIELKKDVQAQGILSYLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+   +P   TL  +L A++  ++EV+ +R+++ L KA DR H++ GL 
Sbjct: 323 DLQVSYNFNMVAIYKRRPTMMTLQTMLDAYIEHQKEVITKRSEFDLQKASDRMHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LD+V++ IR S +   A+  L+                               SE
Sbjct: 383 KALSILDKVIKTIRSSTDKRDAKNNLI--------------------------AAFDFSE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT     D++ E +SL   I E   IL+S ++L  +IK+EL +++ +
Sbjct: 417 AQAEAIVSLQLYRLTNTDITDLQKEEDSLKKTIAELTGILTSSTKLKNVIKKELANIRKQ 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRR+ I + +  + +  E  I  E++VVTV+  GYVKR     Y A    GK     
Sbjct: 477 FAEPRRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVKRTSTRSYAAS--NGK---DF 531

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M++ D +     ++T  ++L F++ G    + +  LP    +  G+ L +I+ L+  E 
Sbjct: 532 AMKETDHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDIKWKDLGQHLSSIIQLDANES 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI--AMKLDSRDEILSV 687
           +  + PF   ++  + L V   +K G V+R+ L D+ QI R  +    M L S D ++  
Sbjct: 592 VLAVYPFENFDADASILTV---SKLGQVKRSALKDY-QIQRYSRTVKTMNLKSGDAMIYA 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              T+E ++ + T     VRFP+  + +  G  + GV+G++L   D+ +S  ++   D +
Sbjct: 648 GLVTKETELFIGTNQAYGVRFPLEEVPL-TGLRTGGVKGVNLKGDDEAVSAILI---DPE 703

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             + +  + H  A                              +++KL E          
Sbjct: 704 VKQELVLVTHRGA-----------------------------AKKMKLDE---------- 724

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
                    F   +R+ +G+      K N    +VAV      ++IIL + KG  I +  
Sbjct: 725 ---------FESGSRAKRGVVMLRELKSNP-HRVVAVIGATGKEEIILETAKGLRIPLVA 774

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           N ++   R + G  I   + D +VV+  R+   E
Sbjct: 775 NSLKNVDRYSNGSFIADESSDGKVVAAYRLNTKE 808


>gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
 gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
          Length = 843

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 291/771 (37%), Positives = 448/771 (58%), Gaps = 74/771 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L D+ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 ASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG VA+ID+P++  + L ++I GPDFPTG  I+ + GI+ AYATGRG I +RG++
Sbjct: 193 LGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGIT 252

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IE      K   +R  IVVTE+PYQVNKAA +EK+A+LV + R+  IAD+RDESDR G 
Sbjct: 253 RIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A+V+L  LY+ T+LQS F   ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  + L +A+ R H+L GL IA+ NLD ++ I+R                 NA+   
Sbjct: 373 LTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILR-----------------NAA--- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 D ++  +     + +S+ Q  AIL + + RLTGL +  +++E + L   I+E  
Sbjct: 413 ------DGTTAKMRFQAELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEELQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE----------GLLDMEDEDCIVREDM 538
            +LS R  LL  +K++L S+K +   PRRTRIV+            +  E+     +++ 
Sbjct: 467 TLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPTVKKEESPAKAKKEE 526

Query: 539 VVTVSHLGY---VKRVP-LSVYRAQRR--------GGKGRSGVVMRD---EDFVTDLFIV 583
           + T S        ++ P L+++  Q            +G +   + D   +D      I+
Sbjct: 527 LPTTSSPKTEESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSSIFRAII 586

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL------NQGERITTIMPFP 637
              + ++  + +G  Y   V  +P  + Q+     I +LSL          R+      P
Sbjct: 587 GQKSELMVITDVGKAYPIAVAEIPPLTLQS-----IPLLSLLPKGAQKDANRVIDAGFVP 641

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
            D   ++   ++  T+ G ++R K+S+   +   G + +KL   D +  V    +  +++
Sbjct: 642 NDPHGYD---LLLLTQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVV 698

Query: 698 LTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +    G+ +R+P++  +    GR++ G + + L  G++V++  + LH+  +
Sbjct: 699 IAISGGRILRYPVTDEVIPLMGRSAQGNQALKLRYGEEVVN-CVTLHSQGE 748


>gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631]
 gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631]
          Length = 738

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 312/861 (36%), Positives = 467/861 (54%), Gaps = 145/861 (16%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++++YL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  +K +VKCAR+ G 
Sbjct: 9   IAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVGH 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+A +Y+AL RMAQD+S+R  LI+GQGNFGS+DGD PAA RYTECRL + A 
Sbjct: 69  VLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECRLTEIAE 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+D+ K+TVDF+PN+D S QEPVVL A+ PN+L+NG  GIAVGM TNIP HN+ EV D
Sbjct: 129 KMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVCD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A I NP+I ++ LM  I+GPDFPTG VI+GR GI  AY TG+G I++RG   +E+  
Sbjct: 189 GIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKVDVEE-- 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
              ++I++ EIPY VNKA ++EKIA+L+++ +++    +RDESDR+G RVVIELK    +
Sbjct: 247 ---DKIIIREIPYMVNKAKLVEKIADLIKKDKLL-AKTVRDESDREGIRVVIELKEDPYS 302

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
              L +LY +T L+  F+V M+AL   +P+   L  ++  +V  R EVV R+ +Y L KA
Sbjct: 303 --ALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +R H++ GL  A+  LDEV+ +I+ S + + A+  LM+                     
Sbjct: 361 EERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK--------------------- 399

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + ++E Q  AIL+LRL  LT L  + +  E N L   I E   IL+   R+  I
Sbjct: 400 -----LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRIDELKSILADPKRVDEI 454

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I +EL  VK +    RRT I++  +  E     V E+  V V+  G +KR    + +A R
Sbjct: 455 IVEELREVKRKFGDNRRTEIIDKEILKE-----VVEEFGVAVTLDGQIKR--FEIGKALR 507

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL-- 618
              K    +++R            ++  +L FSS      +K +     S  AR   L  
Sbjct: 508 SNPK----ILLR----------AMSNLDILLFSS------DKAY-----SIHARDIPLDF 542

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             +      E++ T +    D        VV  +K GN+++ +L +F    R+G IA   
Sbjct: 543 TPLSKFISAEKVETGVVAKGD--------VVILSKDGNIKKVRLEEFANAKRAGIIA--- 591

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               E +      ++ D+++ TK G  VRF  S I  + GR++ GV+ I+L +GD++  M
Sbjct: 592 ---GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEY-GRSAKGVKAITLREGDEIAWM 647

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           +I      DY                                                  
Sbjct: 648 SI---GKGDY-------------------------------------------------- 654

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L ++  G+ K+    +FR++NR   G+R         +   +AV  +   ++    + 
Sbjct: 655 -VLILTRDGYAKKVPIDEFRLTNRGAMGVRG--------VRGEIAVAEIVSEEEYYAYTS 705

Query: 859 KGTLIRVPVNEIRIASRATKG 879
           +G  +R+ V  I    R  KG
Sbjct: 706 EGNAVRINVKRIPKGDRYKKG 726


>gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 441

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/465 (52%), Positives = 331/465 (71%), Gaps = 26/465 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                            LSE Q++AIL++RL RLTGL RD I++E
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSE 440


>gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
          Length = 807

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 308/877 (35%), Positives = 476/877 (54%), Gaps = 98/877 (11%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I++PD 
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIESPDC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IRG + +E   G REQIV+TEI
Sbjct: 203 TVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVEAVRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVV+ELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  R+ + L KA++R H++ GL 
Sbjct: 323 DLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+ +IR S + + A++ L+ +                             +E
Sbjct: 383 KALSVLDEVIAVIRASSDKKDAKQNLISK--------------------------FSFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I+E   ILS   +LL +I   L  +K  
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKT 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GYVKR     + A      G    
Sbjct: 477 YADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+ + NI ++++ E 
Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +   E   +    Y++F TK+G V+R +++ + +  R  K  +A+ L   DE++ V
Sbjct: 592 IVKAISVKEFNPAS---YLLFMTKNGMVKRTEMTHY-KAQRYSKALVALNLKGDDELVDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                   + + T LG  + F    + V   R + GV+GI+L  GD V+S  I+   D+ 
Sbjct: 648 HVTDGGCQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKDGDTVVSGQILHETDS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               ++ V+++G
Sbjct: 706 ----------------------------------------------------LVLVTQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR +  +F  ++R+ +G+      K N    +V VF     D I   ++KG  I   V
Sbjct: 714 AIKRMNLSEFEKTSRAKRGVIMLRELKKNP-HRVVGVFACALADTIAAETEKGERIETTV 772

Query: 868 NEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902
             +R   R + G   F T +DE   V  V RI  S++
Sbjct: 773 KSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807


>gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO]
          Length = 764

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 286/780 (36%), Positives = 462/780 (59%), Gaps = 47/780 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+             K+L
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+                +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T        + ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
              +  G+ +   +S L+  E I  + P+ + ++       VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627

Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  +S  ++ MKL +  DE+++V     +   D+ L T  G  +R+P++ + V  G  +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743


>gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 817

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 300/754 (39%), Positives = 430/754 (57%), Gaps = 72/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EE+ I  + + DEMQ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+   
Sbjct: 12  DDFEER-ILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPE 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+ + DPPAA
Sbjct: 71  RGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A+  + + + ++TVDF PNYDGS QEPV L A YPN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I +P  DLD LM  + GPD PTG  I+G +G+++AY TGRG+
Sbjct: 191 TNMPPHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIVGMSGVRDAYETGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR+ 
Sbjct: 251 FKIRATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLTDREH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+R L+QR      
Sbjct: 371 NVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQR------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQT+ IL+  L RLT   R ++ +E + L  EI+E
Sbjct: 425 --------------------FGLSEVQTQYILDTPLRRLTKFDRLELESERDRLNTEIEE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  TPRRT ++E          L++ D+ C      
Sbjct: 465 LTRILDSDAELRKLVSGELAAVAKKFGTPRRTVLLESSNAPVTAVPLEVADDPC------ 518

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     P  V    +R             D +      +   SV   +S
Sbjct: 519 RVLLSSTGLLARTADGEPFPVEGKAKRA----------KHDVILSAVPATARGSVGAVTS 568

Query: 595 LGFVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP+     G P   G A I   LSL +GE +  +     DESS     +
Sbjct: 569 TGRLLRLTVIDLPMLPESAGPPNLAGGAPIAEFLSLEEGEELICLTTL--DESSPG---L 623

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T+ G V+R  + D+   N+     + L   D I+ +VE  T E D++  T   Q +R
Sbjct: 624 AIGTEQGVVKR-VVPDY-PANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLR 681

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +  S +R   GR + G+ G+ LA G +VIS   V
Sbjct: 682 YAASQVRP-QGRAAGGMAGVKLASGAKVISFTAV 714


>gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801]
 gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801]
          Length = 835

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 290/762 (38%), Positives = 440/762 (57%), Gaps = 64/762 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L D+ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 ASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG VA+ID+P++  + L ++I GPDFPTG  I+ + GI+ AYATGRG I +RG++
Sbjct: 193 LGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGIT 252

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IE      K   +R  IVVTE+PYQVNKAA +EK+A+LV + R+  IAD+RDESDR G 
Sbjct: 253 RIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A+ +L  LY+ T+LQS F   ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  + L +A+ R H+L GL IA+ NLD ++ I+R                 NA+   
Sbjct: 373 LTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILR-----------------NAA--- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 D ++  +     + +S+ Q  AIL + + RLTGL R  +++E + L   I+E  
Sbjct: 413 ------DGTTAKMRFQAELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLG 546
            +LS R  LL  +K++L S+K +   PRRTRIV+     +      + +E+   T+S   
Sbjct: 467 TLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPNVKKEEPPTTLSPKT 526

Query: 547 --YVKRVP-LSVYRAQRR--------GGKGRSGVVMRD---EDFVTDLFIVSTHTSVLFF 592
               ++ P L+++  Q            +G +   + D   +D      I+   + ++  
Sbjct: 527 EESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVI 586

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSL------NQGERITTIMPFPEDESSWNNL 646
           +  G  Y   V  +P  + QA     I +LSL          R+      P D   ++  
Sbjct: 587 TDAGKAYPVAVAEIPPLTLQA-----IPLLSLLPKGAQRDANRVIDAGFVPNDPHGYD-- 639

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  T+ G ++R K+S+   +   G + +KL   D +  V    +  ++ +    G+ +
Sbjct: 640 -LLLLTQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRIL 698

Query: 707 RFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           R+P++  +    GR++ G + + L    + +   + LH+  +
Sbjct: 699 RYPVTDEVIPLMGRSAQGNQALKLRNVGETVVNCLTLHSQGE 740


>gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 817

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 298/870 (34%), Positives = 461/870 (52%), Gaps = 92/870 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RAIPD+RDGLKPV RRIL+ M       +K Y K A+  G+VMG YHPHG++
Sbjct: 23  YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGDVMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+ + RMAQ W +  +LI+G GN+GS+D DP AA RYTE RL   A  +L D+ K TV
Sbjct: 83  SIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAMEILRDIDKRTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP H+L E +D C+AV+  P++
Sbjct: 143 QFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETIDACIAVMARPEM 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            ++ LM I++GPDFPTG +I+G  GI+ AY TG+G I IR    IE   G R+QI +TEI
Sbjct: 203 TVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIRSKVEIEDVRGGRQQITITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQV K+ ++  +  +  EK++  I+++RDES R G R+V+ELK+ A A+ IL  L + T
Sbjct: 263 PYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVELKKEADANGILAYLLKKT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA+    P++  +  IL A++  ++EVV  RT+Y L KA +RAHV+ GL 
Sbjct: 323 DLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVTHRTQYELEKAEERAHVVEGLV 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LDEV+  I+ S N   A+  L+ +                             SE
Sbjct: 383 KALNILDEVIATIKASKNRADAQNNLVAKYG--------------------------FSE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AIL L+L RLT L    +  E      +I     IL S  +LLG+IK EL  ++++
Sbjct: 417 RQADAILTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREK 476

Query: 512 LDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RR+ I   VE  L +  E  +  ED++VT+S  GY+KR   S+    R GG  ++ 
Sbjct: 477 YGIDRRSSIRGEVEE-LKVNLEVMVQSEDVIVTLSEEGYMKRT--SMLSFTRSGGDLQTA 533

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
            V ++ D ++ ++ V+T  ++L F+  G  Y   V ++P    +  G A++NI+ + + +
Sbjct: 534 GV-KEGDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDD 592

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I  I+P  +      +L  VF TK   V+R +L +++    +   A K+   DE++ V 
Sbjct: 593 SIVAIIPVKDFNLPGASL--VFVTKRAQVKRTELKEYMTTRSTAIAAAKVAEGDEVIRVT 650

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                  +LL +KLG  +RF    +    GR + GVRG+ L + D++I+   V   + + 
Sbjct: 651 LSEGTKQLLLVSKLGMSIRFSEQEVNAM-GRVAAGVRGMQLREDDELIAAEWVADDEGE- 708

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                              +L V++ G+
Sbjct: 709 ---------------------------------------------------VLVVTDLGY 717

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIR 864
            KRT   D+ +  R GKG++  +  +   +     ALVA     +   II ++ +G  + 
Sbjct: 718 AKRTLLLDYPLQGRGGKGVQTFEFKEGKRVKPNGSALVAALYCKEELGIIALTSQGAQLA 777

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               +  I  R + G ++    K++ + ++
Sbjct: 778 ASSEKAPIEDRKSIGRILLPMEKNDVITTI 807


>gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 809

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/760 (36%), Positives = 433/760 (56%), Gaps = 61/760 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD RDGLKPV RRI++ M   G  ++K + K A+  G V+G 
Sbjct: 16  MGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRKSAKTVGNVIGN 75

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA+ RM+QDW  R +L+E  GN GSVDGDPPAA RYTE RL   A  LL 
Sbjct: 76  YHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEARLSAIAAELLR 135

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV+F PN+D    EP VL +R+PN+LVNG  GI+ G AT+IP HNL E +D  + 
Sbjct: 136 DINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPHNLQEALDAVLM 195

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +DN    +D LM +I+GPDFPTG +I G  GIK AY TG+G I++R  + IE+  G++E
Sbjct: 196 RLDNKSCTVDELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVRSRTEIEQLKGNKE 255

Query: 265 QIVVTEIPYQVNKAAMLEKIAEL-VREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           QI++TEIP++VNKA M+ K+ EL V ++R+  I+++RDESDR G R+V+ELK+   A  I
Sbjct: 256 QIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIVVELKKDVPAQGI 315

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN L + T LQ  ++ NM+A++  +P   TL  +L A++  ++E+V RR++Y L +A DR
Sbjct: 316 LNFLLKSTDLQVSYNFNMIAIHNRRPMMMTLPLMLDAYIDHQKEIVRRRSQYDLTRAEDR 375

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            H++ GL  A++ LDEV+  IR S +   A+  ++++                       
Sbjct: 376 LHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEK----------------------- 412

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 SE Q  AI+ L+L RLT      ++ E + L   + +   IL    +L+ +IK 
Sbjct: 413 ---FGFSEEQAEAIVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILEDEKKLIRVIKS 469

Query: 504 ELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRR 561
           EL  +K     PR + I   + +++   D +V  E++VVTV+  GYVKR  L  + A   
Sbjct: 470 ELNDIKKRFTLPRLSTIEAEIEEIKVTRDVLVPSEEVVVTVTKDGYVKRTSLRSHSAS-- 527

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
            GK      M+D D++     ++T   +L F++ G    + V  L    P  R K L   
Sbjct: 528 NGK---DFAMKDSDYLLYEANLNTQHHLLLFTNKGHYIYQPVHEL----PDIRWKDL--- 577

Query: 622 LSLNQGERITTIMPFPEDES----------SWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                G+ I++I+P   +E              N+YV  ATK G ++R+ L+D+I    S
Sbjct: 578 -----GQHISSIVPIDSNEEIIEVIGIETFEQPNMYVFTATKEGQIKRSALADYIVTRYS 632

Query: 672 GKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             I  M L   DE++     T + ++LL+T     +RFP+  + V  G  + GV+GI + 
Sbjct: 633 KPIKTMNLKGEDEMIFARLVTDKEEVLLSTNTSYTIRFPMEDLPV-TGVKTAGVKGIIVK 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +G+ + ++A++     D ++ +  +    A +R++  + E
Sbjct: 692 EGEYLAAVALL---KPDQEQELVIVTQRGAVKRMLLSELE 728


>gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
 gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
          Length = 816

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 281/709 (39%), Positives = 421/709 (59%), Gaps = 37/709 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M       +K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKHFRKSAKTVGTVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++YDA+ R++QDW +R  LIE  GN GS+DGDPPAA RYTE RL   +  LL D+ K TV
Sbjct: 83  SVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRYTEARLSSISAELLRDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PN+D +  EPVVL A++PN+LVNG  GI+ G AT+IP HNL EV+D  +  ID P+ 
Sbjct: 143 DYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDIPPHNLEEVMDAVILKIDKPEA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LM++++GPDFPTG +I G  GI+ AY TGRG I++RG + +E   G REQIVVTE+
Sbjct: 203 SIDDLMKLMKGPDFPTGGIIQGVEGIRKAYETGRGKIIVRGKAVVETMKGGREQIVVTEV 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA M++K+ EL  ++++  IA++RDE+DR G RVVIELK+ A+++ +LN LY+ T
Sbjct: 263 PFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRVVIELKKDANSEGVLNYLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  +  NMVA+    P+  +L  +L A++A ++EVV R+  Y LNKA  RAH++ GL 
Sbjct: 323 DLQITYHFNMVAIQDKTPKLLSLPSLLDAYIAHQKEVVTRQITYDLNKANARAHIVEGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDE++  IR S +   A+ ++  +                             +E
Sbjct: 383 KAISILDELIATIRASKDKGDAKAQIKAKYG--------------------------FTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT     ++  E   L  +IKE   ILSS  +L   IK+EL  +K +
Sbjct: 417 EQAEAIVMLQLYRLTNTDIVELEKEAAELKEKIKEYESILSSDKKLFQTIKKELRQIKKK 476

Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT I E +  L +  E  +  ED++V+V+  GY+KR  L  Y A          +
Sbjct: 477 FADPRRTVIEEKIEELKINIEVTVASEDVLVSVTRDGYLKRTSLRSYAAS-----NEEEL 531

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            ++D+D+   L  V+T  ++L F++ G      V  LP    +  G+ + NI+ L++ E 
Sbjct: 532 PVKDDDYPISLLEVNTTDNLLLFTNKGKYILCPVHELPDIRWKDMGQHISNIVPLDKEEY 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVE 688
           +   MP  + +S+    Y++F TK+G V+R++   +    RS   IA+ L   DE++ V 
Sbjct: 592 LIQCMPVRDFKSAEG--YLIFFTKNGMVKRSEFQLYDAQRRSKALIALNLKGDDEVVHVS 649

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
                 D+ + T  G  + +  S I V  G+ + GV+ +SL   D+V++
Sbjct: 650 HTNGNMDVFIATYKGYGLWYHESEISV-VGQRAAGVKSVSLKDDDEVVN 697



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 746 ADYDERIC-YMKHMSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLK------- 796
           A+  E+I  Y   +S+ ++L     +E+  +K   +     + EE+ +ELK+        
Sbjct: 443 AELKEKIKEYESILSSDKKLFQTIKKELRQIKKKFADPRRTVIEEKIEELKINIEVTVAS 502

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  +++V+  G+ KRTS   +  SN     ++  D          +++  VN  D ++L 
Sbjct: 503 EDVLVSVTRDGYLKRTSLRSYAASNEEELPVKDDDYP--------ISLLEVNTTDNLLLF 554

Query: 857 SDKGTLIRVPVNEI 870
           ++KG  I  PV+E+
Sbjct: 555 TNKGKYILCPVHEL 568


>gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 803

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 272/742 (36%), Positives = 437/742 (58%), Gaps = 60/742 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S+ + D + + +  Y+  +I  RAIPD+RDGLKPV RRILF M   G  ++K Y K
Sbjct: 3   ENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG+ ++YDA+ RM+QDW LR +L+E  GN GS+D DPPAA RYTE 
Sbjct: 63  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K A+ LL+D+ K+TVDF  N+D +  EP+VL A YPN+LVNG  GI+ G AT+IP H
Sbjct: 123 KLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + VID P+I  D +M+++ GPDFPTG +I+G++GIK AY TGRG I +RG 
Sbjct: 183 NLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGGIIMGKSGIKQAYETGRGKIQVRGK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IEK  G RE+I+++EIP++VNK+ ++++I EL  +K++  I ++RDE+DR G R+ IE
Sbjct: 243 VDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRIAIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+++ ILN LY+ T LQ  ++ NMVA++  +P+   +  +L +F++ ++EVV RR+
Sbjct: 303 LKKDANSEGILNFLYKNTDLQIAYNFNMVAISDRRPKLLGVRDMLNSFISHQKEVVTRRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y  + A  R H++ GL  A++ LD+V+++IR S N   A+  L+ +             
Sbjct: 363 QYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +  E  +L   +K+   IL+ 
Sbjct: 410 -------------FNFTEAQAEAIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILND 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            + L  +IK+EL +++ E    R ++I E + +++   E  +  E+ V++++  GY+KR 
Sbjct: 457 ETHLKKVIKKELKAIQKEFKEERLSQIEEKIAEIKISKEILVPNEETVISITREGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS- 610
               + A      G + + M+++D      +++ H S L   +L F  K +   +P    
Sbjct: 517 SPRSFNAS-----GVTDIGMKEDD-----QLLAYHESNLQHITLVFTDKGRYMYIPNHQL 566

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDE--------SSWNN-LYVVFATKHGNVRRNK 661
           P+ R K L        G  I+ I+P   DE        + +N+ + ++ AT++G ++ + 
Sbjct: 567 PEIRWKDL--------GTHISQIVPIDSDERVIHMITVTDFNSEVKILAATRNGMIKLSS 618

Query: 662 LSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           L DF ++ R  +  I MKL   D + ++   T    IL+ TK G  + + ++ +    G 
Sbjct: 619 LKDF-EVTRYSRPLINMKLKGNDVVNTIHVVTGSEHILVVTKQGMSLHYSLTELN-DTGL 676

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
            + GV+ I+L   D VI+  I+
Sbjct: 677 KAAGVKSINLKDDDVVITTEII 698


>gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 822

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 286/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R  + 
Sbjct: 186 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ IELK
Sbjct: 246 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  +LN L + T LQ  ++ NMVA+N  +P R  L   L +++AF++EV+ RRT++
Sbjct: 306 RGVDAQGVLNYLLKNTDLQINYNFNMVAINDQRPVRVGLKHYLASYLAFQKEVITRRTRF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+                 
Sbjct: 366 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            ++Y          +  Q  AI+ L+L RLT      +  E   L   I+    IL+   
Sbjct: 409 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++K+E+ ++K E   PRRT+I + +  L ++    +  ED++V VS  GY+KR  +
Sbjct: 460 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612
             ++A   G  G     +R++D+   L   +T + +  F++ G F+Y+  V  L     +
Sbjct: 520 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 573

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670
             G+ L   + L+  E I   M    D+      + +FAT  G V+++ LSD+   +R  
Sbjct: 574 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 630

Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    +++SV+    E     +L  ++ G  +RF +  + V  G  + GVR 
Sbjct: 631 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 689

Query: 727 ISLAKGDQVISMAIVLHADADY 748
           I+L + DQ++   I L  D D+
Sbjct: 690 INLKEDDQLV--GISLAGDGDH 709


>gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 580

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 265/555 (47%), Positives = 353/555 (63%), Gaps = 32/555 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC+
Sbjct: 43  VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR+
Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN+
Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222

Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV DG    +D+PD      L+AL++ I+GPDFPTGA ILG  GI+ AY TGRG I +R
Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310
            V + E+  G R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R+
Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + EV+ 
Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVID 401

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YL  +A +R H+L G   A+  +DEVV +IR S + +TAR  LM          +L
Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------NL 451

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D+ D                VQ  AIL ++L RL  L R  I +E   L  +I++  DI
Sbjct: 452 LDVDD----------------VQADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDI 495

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+  GY+KR
Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555

Query: 551 VPLSVYRAQRRGGKG 565
                YRAQ RGGKG
Sbjct: 556 TKADEYRAQHRGGKG 570



 Score = 41.2 bits (95), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           QR+++  + +EI +   D   + +     E   ++L  +E  ++TV+  G+ KRT + ++
Sbjct: 502 QRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKRTKADEY 561

Query: 818 RISNRSGKGIRATDVSKI 835
           R  +R GKGI+A +  K+
Sbjct: 562 RAQHRGGKGIKALNCVKM 579


>gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
 gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
          Length = 820

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 302/882 (34%), Positives = 481/882 (54%), Gaps = 99/882 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKNNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ KDTV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P+  LD LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGILQGKEEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   K+I  IA++RDE+DR G ++
Sbjct: 242 RSKTRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL+++V  R EV+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDEMRPQQVGLKHILESYVKHRREVIA 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQHG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I+E   I
Sbjct: 414 ------------------FTEEQAEAIVTLQLYRLTNTDITQLQAEAQELAETIRELTKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  + R T I   +  + +E +  + +ED+VVTV+  GYV
Sbjct: 456 LNEETELLKVIKKELREIKKKYHSDRMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +      ST   +L  ++ G V    +  LP 
Sbjct: 516 KRSSLRSYGASKPEELG-----MKEGDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L   E I  +  + E +   N    V  +K+G +++ ++++F +
Sbjct: 571 LKWKDLGEHISQTVMNLATEETILAVFTYQELDPQKN---FVLISKNGMIKQTRMTEF-E 626

Query: 668 INRSGK----IAMKL-DSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL D  DE+++V    Q    D+ L +     +R+P++ + V  G  
Sbjct: 627 PWRTYKSRPLTMMKLKDEADELVNVYLADQNEPLDVFLVSYRAFGLRYPLAEVPV-VGPK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + DQ+++  +V      Y E                GDT           
Sbjct: 686 AAGVKAMNLKEDDQIVNGLLV------YSE----------------GDTP---------- 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ++ V+++G  KR  + +     R+ +G+      K N    
Sbjct: 714 -------------------VIMVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKNP--H 752

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            +      +N  +IL + KG +I +  N+I I  R + G  +
Sbjct: 753 RIVYMGSGENQSLILTTQKGQMIEIETNQIPINDRTSNGSFV 794


>gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
 gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
          Length = 806

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 307/871 (35%), Positives = 474/871 (54%), Gaps = 94/871 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL   A  LL D+ K+TV
Sbjct: 83  SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGEV+D  +  I  P  
Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE   G REQIV+TEI
Sbjct: 203 SVDELMEVIKGPDFPTGGIIQGIDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ A A  ILN LY+ T
Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L KA+DR H++ GL 
Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A++ LDEV+  IR S +   A+  L+ +                             +E
Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +LL +I   L ++K +
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476

Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ I E + +++   E  +  ED+ VTV+  GY+KR     + A      G    
Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            M+D D +   F ++T   +L F++ G      V +LP    +  G+   N++++++ E 
Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I   +P  E + S    Y++F TK+G V++ +L+ + +  R  K  +A+ L   DE++ V
Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                E+ I + T LG  + F    + V   R + GV+GI+L + D V+S  I+  +D+ 
Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               I+  +++G
Sbjct: 706 ----------------------------------------------------IVLFTQRG 713

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR S  +F  ++R+ +G+      K N    +VA+F      +++  ++KG    +  
Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQA 772

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            E+R   R + G   F   +  +V +V R+ 
Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLH 803



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E   +TV++ G+ KRTS   F  SN    G++ TD         ++  F +N  D ++L 
Sbjct: 503 EDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTD--------RMLHQFEMNTTDVLLLF 554

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++KG+ I  PV++   IR          + +  +DE +V    I+E
Sbjct: 555 TNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKE 600


>gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
 gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
          Length = 424

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/369 (62%), Positives = 287/369 (77%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI  EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K + K AR 
Sbjct: 25  TISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMNESGNTHDKAFRKSARA 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDALARMAQD+S+ L LIEGQGNFGS+DGD PAA RYTE RL K
Sbjct: 85  VGDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEGQGNFGSMDGDSPAAMRYTEARLAK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 VASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I NPD+  + LM+ +  PDFPTG +ILGR+G + AY  GRGSI++R  SH+E
Sbjct: 205 VIDATIALIKNPDLTSEDLMQYVPAPDFPTGGMILGRSGARKAYLEGRGSILMRARSHVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I+V ++PYQVNK+ M++KIAE VR+KRI  IA ++DESDR G RVVIELKR 
Sbjct: 265 EIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKRIEGIAHIQDESDRNGVRVVIELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ADV+LNQLYR++ +Q  F  NM+ALNG +PE  TL   L+ F+ FREEVV RRT + L
Sbjct: 325 ATADVVLNQLYRFSPMQISFGANMLALNGGRPETLTLYRFLQCFIDFREEVVARRTAFEL 384

Query: 378 NKARDRAHV 386
            KAR+RA +
Sbjct: 385 RKARERAAI 393


>gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
 gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
          Length = 814

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 314/885 (35%), Positives = 475/885 (53%), Gaps = 95/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   LLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRKAA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H L
Sbjct: 125 SAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  + 
Sbjct: 185 GEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAT 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G +  I++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIELK
Sbjct: 245 IEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R++VV  R+ +
Sbjct: 305 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRSHF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-LI 434
            L KA +R H++ GL  A++ LDEV+  IR S                 SD +D  D LI
Sbjct: 365 ELKKANERKHIVEGLIKALSILDEVIATIRAS-----------------SDKRDAKDRLI 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +  +T          E Q  AI+ L+L RLT      +R E   L   I E   IL+  
Sbjct: 408 ANYGFT----------EAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +LL +IK+EL S+K +    RRT I E +  L +  E  I  ED++VTV+  GYVKR  
Sbjct: 458 KKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G     M++ D +     ++T   +L F+  G+     V  LP    +
Sbjct: 518 YRSYSASNGQDIG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWK 572

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ + +++ + + + +  ++P    E+   N  +VF TKHG V+R +LS + Q+ R  
Sbjct: 573 DVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQY-QVQRYT 628

Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +  +A+ L   D++++V        I + T  G  + F    I    G  + GV+GI L 
Sbjct: 629 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEIS-LVGVRAAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V ++             IC                EE  SL               
Sbjct: 688 EGDFVAAVC-----------PIC---------------PEESGSL--------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     + V+++G  K+ +  +F  ++R+ +G+      K N    + AV   ND 
Sbjct: 707 ----------IVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGAVM-TNDG 755

Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++I + ++KG    V V  +R+  R   G  +  T +   V+ V
Sbjct: 756 EEMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDV 800


>gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
 gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
          Length = 810

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 299/832 (35%), Positives = 473/832 (56%), Gaps = 55/832 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G   +K + K A+  
Sbjct: 10  LPLEDVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++YDA+ RM+Q+W +R LL++  GN GS+DGDPPAA RYTE RL K 
Sbjct: 70  GNVIGNYHPHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRYTEARLSKI 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL D+ K+TVD+ PN+D S  EPVVL A +PN+LVNG  GI+ G AT+IP H+L E+
Sbjct: 130 SAELLRDIDKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLSEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG +  ++ P   L+ LM +I+GPDFPTG ++ G  GIK AY TG+G +++R  + +E+
Sbjct: 190 IDGVIMQMEKPQTTLEDLMTVIKGPDFPTGGIVQGIDGIKQAYRTGKGKVIVRAKTEVEE 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G R+QI +TEIPY+V KA +++K+ EL  +K++  IA++RD++DR G R+V+ELK+ A
Sbjct: 250 LRGGRQQITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRIVVELKKEA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  IL+ L++ T LQ  ++ NMVA++   P+   L  +++A++  ++EV  RR +Y L 
Sbjct: 310 DAKAILHYLFKNTDLQVTYNFNMVAIHNKTPKLMGLQPLIQAYIDHQKEVATRRAQYDLK 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+DR H++ GL  A++ LDEV+  IR S + + A+  L+ R ++               
Sbjct: 370 KAKDRQHIVKGLIKAISILDEVIATIRSSKDKKDAKENLI-REYD--------------- 413

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE Q  AI+ L+L RLT      +  E   L   I E   IL S  +L+
Sbjct: 414 ----------FSEAQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAILGSEKKLI 463

Query: 499 GIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIV-REDMVVTVSHLGYVKRVPLSVY 556
            +IK+ L SVK +   PRRT    E      + D +V  ED++VTV+  GYVKR  +  Y
Sbjct: 464 TVIKKGLQSVKKQFADPRRTVIKEEIEEIKINMDVLVASEDVMVTVTEEGYVKRTSIRSY 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + D F ++T  ++L F+ LG      V  LP    +  G+
Sbjct: 524 TASNGEPPG-----MKEGDRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPDIRWKDNGQ 578

Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            + N++S+++ + I   MP   F E ES      ++F TK+G  +R++LS   Q  R  K
Sbjct: 579 HIANLVSVDRDDCILRAMPVKEFSESES------LLFITKNGMAKRSQLS-LYQAQRFSK 631

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +A+KL + DE++SV     + ++ + T LG  + F    I +  G+ + GV+ I+L  
Sbjct: 632 PLMALKLKADDEVVSVMRTDGKKELFIATHLGYGLWFDEEEISL-VGQRAAGVKAINLKD 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNISEER 789
            D+V+  A     +   D  +  + H  A +++   + ++ +  K    +  E   +  R
Sbjct: 691 DDKVVD-AFTFEPEDKVD--LFIVTHRGAVKKMPLSEFDKSSRAKRGLVMLRELKSNAHR 747

Query: 790 ---CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              C+ +  KE  I  ++EKG  +      +R+S+R   G  A D ++   +
Sbjct: 748 VIGCRRVS-KETLIEILTEKGQQETIDPSAYRMSDRYSNGSFAIDSAQAGSV 798


>gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 857

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 283/746 (37%), Positives = 437/746 (58%), Gaps = 66/746 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M QMG+ +NK Y 
Sbjct: 13  EEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSYK 72

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++  GN GS+DGD  AA RYTE
Sbjct: 73  KSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAMRYTE 132

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A FLL D+ K TV+F PN+D   QEP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 133 ARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKIPP 192

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +A+IDNP+I  D +++ I+GPDFPTG ++ G+ GIK A  TG G I+IR 
Sbjct: 193 HNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEALTTGSGKIIIRA 252

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             ++E+ S  +++IV+TEIPY+VNKA ++ +I  L     I DI ++RDE+D++G R+ I
Sbjct: 253 KMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLRIAI 312

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+GA A  I N L + + LQ  ++ NMVA+  ++P       +LK ++  ++EVV  R
Sbjct: 313 DLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKVYLEHQKEVVTNR 372

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + Y L +A  R H++ GL    + + EV+  IR S N   ++  + +R            
Sbjct: 373 SNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKR------------ 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE+Q  AI+ L+L RL+      + +E ++L  EI     ILS
Sbjct: 421 --------------FGFSELQAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILS 466

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   LL  IK EL  V+  L +PRRT +   +  + ++++D I  E   V ++  GYVKR
Sbjct: 467 NERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKR 526

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVY------KEKV 603
             L    A +  G   +  ++ +E+       ++T  ++L F++LG ++Y      +E+ 
Sbjct: 527 ASLRSVVASKEVGLKENDAMLYEEE-------LNTLDTLLLFTNLGQYIYLPVYKIEEQK 579

Query: 604 WRLPIGSPQARGKALINILSLNQGE---RITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           WR         G  + NI+  ++GE   R+  +  F  D+       ++  TK G +++ 
Sbjct: 580 WR-------DLGVYINNIVPTSKGETIIRVLKVSDFSIDQK------ILLTTKQGQMKQV 626

Query: 661 KLSDFIQINRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            L+DF +++R  +   AMKL   DE++SV+   Q ++I+  +K G  +RF    + V+ G
Sbjct: 627 NLADF-EVSRYNRPLRAMKLSKDDELVSVD-YNQLDNIVAISKHGYVLRFDTEELPVY-G 683

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHA 744
             + GV+ ++LA+GD+V   A+  +A
Sbjct: 684 LTAGGVKSMALAEGDEV---AVAFYA 706


>gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
 gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
          Length = 575

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 247/514 (48%), Positives = 341/514 (66%), Gaps = 26/514 (5%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 77  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 136

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+Y+A+ R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  LL
Sbjct: 137 KYHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 196

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EPV L AR+PN+LVNG  GIAVGMATNI  HNL E ++   
Sbjct: 197 RDLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVGMATNIAPHNLAEAIEATC 256

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +IDNPD  +D LM+I+ GPDFPTGA+I+G  GIK +Y TGRGSI +R  +H+E T   R
Sbjct: 257 YLIDNPDATVDELMQIMPGPDFPTGAIIMGSAGIKQSYETGRGSITVRAKAHVESTKTGR 316

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPY VNK  + EKIA+LV +KRI  I+D+RDES+++G R+VIELK+G    V+
Sbjct: 317 SRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESNQKGIRLVIELKKGVIPQVV 376

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+YTSLQ+ F  N +AL    P+  +L  +L+ ++  + +VV RRT++ L KA+ R
Sbjct: 377 LNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 436

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  +A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 437 AHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIER----------------------- 473

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 +  QT AILE++L RLTGL RD I+ EL+ L   I    D+L+   ++LG+IK+
Sbjct: 474 ---FGFTPEQTTAILEMKLRRLTGLERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKE 530

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           E+  +  +    RRT I +   D++ ED I  E+
Sbjct: 531 EMREISKKFGDKRRTEISQVEKDLDVEDLIADEE 564


>gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 816

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 314/885 (35%), Positives = 475/885 (53%), Gaps = 95/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 7   LLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRKAA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 67  KTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H L
Sbjct: 127 SAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  + 
Sbjct: 187 GEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAT 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G +  I++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIELK
Sbjct: 247 IEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R++VV  R+ +
Sbjct: 307 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRSHF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-LI 434
            L KA +R H++ GL  A++ LDEV+  IR S                 SD +D  D LI
Sbjct: 367 ELKKANERKHIVDGLIKALSILDEVIATIRAS-----------------SDKRDAKDRLI 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +  +T          E Q  AI+ L+L RLT      +R E   L   I E   IL+  
Sbjct: 410 ANYGFT----------EAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +LL +IK+EL S+K +    RRT I E +  L +  E  I  ED++VTV+  GYVKR  
Sbjct: 460 KKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G     M++ D +     ++T   +L F+  G+     V  LP    +
Sbjct: 520 YRSYSASNGQDIG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWK 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ + +++ + + + +  ++P    E+   N  +VF TKHG V+R +LS + Q+ R  
Sbjct: 575 DVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQY-QVQRYT 630

Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +  +A+ L   D++++V        I + T  G  + F    I    G  + GV+GI L 
Sbjct: 631 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEIS-LVGVRAAGVKGIQLK 689

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V ++             IC                EE  SL               
Sbjct: 690 EGDFVAAVC-----------PIC---------------PEESGSL--------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     + V+++G  K+ +  +F  ++R+ +G+      K N    + AV   ND 
Sbjct: 709 ----------IVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGAVM-TNDG 757

Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++I + ++KG    V V  +R+  R   G  +  T +   V+ V
Sbjct: 758 EEMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDV 802


>gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716]
          Length = 822

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R  + 
Sbjct: 186 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ IELK
Sbjct: 246 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RRT++
Sbjct: 306 RGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRRTRF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+                 
Sbjct: 366 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            ++Y          +  Q  AI+ L+L RLT      +  E   L   I+    IL+   
Sbjct: 409 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++K+E+ ++K E   PRRT+I + +  L ++    +  ED++V VS  GY+KR  +
Sbjct: 460 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612
             ++A   G  G     +R++D+   L   +T + +  F++ G F+Y+  V  L     +
Sbjct: 520 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 573

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670
             G+ L   + L+  E I   M    D+      + +FAT  G V+++ LSD+   +R  
Sbjct: 574 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 630

Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    +++SV+    E     +L  ++ G  +RF +  + V  G  + GVR 
Sbjct: 631 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 689

Query: 727 ISLAKGDQVISMAIVLHADADY 748
           I+L + DQ++   I L  D D+
Sbjct: 690 INLKEDDQLV--GISLAGDGDH 709


>gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
 gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
          Length = 843

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 310/916 (33%), Positives = 499/916 (54%), Gaps = 100/916 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E I+ S E++   I   S++ E++ S+L YA++VI  RA+PDL+DGLKPVHRRI++   Q
Sbjct: 11  EKIVKSLEKDT--IFDKSLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQ 68

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
             +  + K+ K A + G VMG YHPHG+++IY+AL RMAQD+SLR  LIEGQGNFGS+DG
Sbjct: 69  EKLLNSAKFKKSAALVGTVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDG 128

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL K   + LD + ++ VDF  NYD S +EPVVL    PN+L+NG  GI
Sbjct: 129 DSPAAMRYTEARLSKLGEYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGI 188

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG+ATNIP HN+ EV++  + +I NP+     L++ I GPDFPTG  I   +G+++ ++
Sbjct: 189 AVGLATNIPPHNIREVLNAVLDLIKNPNFSELDLLQYITGPDFPTGGEIFRYSGVRDYFS 248

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-------- 294
           TG G  ++R    +E+    +  +++ EIPY V K  ++E I +L++  +          
Sbjct: 249 TGSGKFILRSKIEVEEQV-KKNLLIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLA 307

Query: 295 -DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            +I ++RDES+ +G R+VIE +    A VI+N LY++T LQ+ +SVN+  L   KPER +
Sbjct: 308 DNIVEIRDESNLEGIRLVIECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGKPERIS 367

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L+ +LK ++  + E++ RRT + L   + R H+L G     +++ E +++I  S NPE  
Sbjct: 368 LLQLLKLYLEHQLEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEED 427

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            R   + S +   + D+  L      T+GS   + +S++Q   + +  L+          
Sbjct: 428 LR--ARYSLSDEQLDDIFRL------TVGSLKKISISKLQEELVTKTDLSIF-------- 471

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDC 532
                      KE   IL+S  +L  +  ++L+ ++D+    RRTR+ +E    ++  + 
Sbjct: 472 -----------KES--ILNSDDKLREVFSEKLIELRDKFGDDRRTRVNMEASGAIDYCEL 518

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V+++SH GY+ + PLS Y+  +RGG G+ G     +D      +      VLFF
Sbjct: 519 FHFQKTVISLSHRGYLSQRPLSTYKLHKRGGSGKEGAFHYKDDKPKMFLVCHGKDDVLFF 578

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFA 651
           S  G VYK+K + + +   + +     N+L  L++GE+I TI+  PE  S  +N Y++FA
Sbjct: 579 SDSGKVYKKKAYEMNLREGKNKATITYNVLPGLSKGEKIVTIIALPEG-SYGDNKYLLFA 637

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V+R  +S F +IN++GK+A+ L   D +  V T   ++ + L +  G+ V+F  S
Sbjct: 638 TSKGLVKRCSMSLFEKINKNGKVAITLRDGDSLKFVITLENDSHVCLASDSGRMVKFLAS 697

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            IR  + R + GV GI++  G+                              LIS     
Sbjct: 698 EIRP-SSRIASGVFGINVGSGE------------------------------LISA---- 722

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                  S+ EG+              ++L++SE G GK T   ++ +  R GK +    
Sbjct: 723 ------SSTYEGD--------------YVLSISELGKGKLTPVSEYSLVKR-GKKVGLIA 761

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                + G ++A   V ++D+I+L++++    R  V++I +  R+T GV +F     ERV
Sbjct: 762 QKTTEKTGKVLACTIVRESDEILLLTNQNRQNRFRVSDISVQGRSTSGVNLFKLENKERV 821

Query: 892 VSVERIRESEIVDEAE 907
           +   +  E E  D+ E
Sbjct: 822 IYFAKNFEQEESDDLE 837


>gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 781

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 310/818 (37%), Positives = 451/818 (55%), Gaps = 105/818 (12%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+   K + K AR+ GEV+GK
Sbjct: 12  VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YDAL RMAQD+S+R  LI GQGN+GSVDGDPPA  RYTE +L K A  LL+
Sbjct: 72  FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PN+D S  EP VL +++PN+L NG  GIAVG+AT+IP HNL EV    V 
Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  NP++  + ++EI++GPDFPTG VI     IK  Y TGRG + ++  +H+EK  G RE
Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVEKVQGGRE 251

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+V+EIPYQVNKA +++KIA+ VR  R+ +I+D+RDESD+ G R+VIELKR A  + +L
Sbjct: 252 QIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKVL 311

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +L++YT L+  F VN+V L   +P+   +  +L+ F+  R  +++RRT++ L KA DR 
Sbjct: 312 KKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDRL 371

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HV+ GL IA+ NLDEV+  IR S + + AR E++Q  +                      
Sbjct: 372 HVVQGLLIALNNLDEVIEGIRRSKDVQEAR-EMLQARFG--------------------- 409

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L+E Q +A+L+LRL RLT L RD +R E   L  +I+    ++ S    + I  +E
Sbjct: 410 ----LTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEE 465

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
             ++  +   PRRT           E+ I    +VV V   G V  V            +
Sbjct: 466 TENLVKKFGDPRRT------FIEGIEEKIEEGSLVVAVLENGKVMPV--------ENMPE 511

Query: 565 GRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           G S VV + D  F   LF+VS           G VY    W        A  +AL     
Sbjct: 512 GESPVVDILDVPFTEGLFLVSNR---------GRVY----W-------LAGSQAL----- 546

Query: 624 LNQGERITTIMPFPEDESSWNNLYV--------VFATKHGNVRRNKLSDFIQINRSGKIA 675
             QG ++     F E E      ++        + AT++G +++  L +F +    G   
Sbjct: 547 --QGSKVN----FKESEEYIVGAFIRERFADRLLLATRNGMIKKIPLVEF-EYKAQGMRI 599

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +KL   DE++ +      +DIL+ T+ G+  RF I  I   A   + G +GI +   D+V
Sbjct: 600 IKLAEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIPA-ATPGTKGAQGIKVEDNDEV 658

Query: 736 ISMAIVLHADADY------DERI--CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + A V+  D  Y      D ++   Y + +  + R + G            +V G+  E
Sbjct: 659 -AGARVIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKG-----------VNVLGSARE 706

Query: 788 ERCQELKLKEQFILTVSEK---GFGKRTSSYDFRISNR 822
                L +K++  L ++ K    F  R  + D  +S R
Sbjct: 707 RLVDLLPIKDELELLITTKLGRAFYDRIRAEDIPLSKR 744


>gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
 gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
          Length = 825

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 285/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 9   IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE RL
Sbjct: 69  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPTHNL
Sbjct: 129 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R  + 
Sbjct: 189 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ IELK
Sbjct: 249 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RRT++
Sbjct: 309 RGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRRTRF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+                 
Sbjct: 369 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            ++Y          +  Q  AI+ L+L RLT      +  E   L   I+    IL+   
Sbjct: 412 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++K+E+ ++K E   PRRT+I + +  L ++    +  ED++V VS  GY+KR  +
Sbjct: 463 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612
             ++A   G  G     +R++D+   L   +T + +  F++ G F+Y+  V  L     +
Sbjct: 523 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670
             G+ L   + L+  E I   M    D+      + +FAT  G V+++ LSD+   +R  
Sbjct: 577 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 633

Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    +++SV+    E     +L  ++ G  +RF +  + V  G  + GVR 
Sbjct: 634 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 692

Query: 727 ISLAKGDQVISMAIVLHADADY 748
           I+L + DQ++   I L  D D+
Sbjct: 693 INLKEDDQLV--GISLAGDGDH 712


>gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
 gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
          Length = 817

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 287/726 (39%), Positives = 426/726 (58%), Gaps = 44/726 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A+  G VMG 
Sbjct: 7   MGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSVGNVMGN 66

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IY+AL R++QDW LR  L+E  GN GS+DGDP AA RYTE RL K A  +L 
Sbjct: 67  FHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKIAGLMLQ 126

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL EV+D  + 
Sbjct: 127 DIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEVLDALIY 186

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I +PD  L+ LME I GPDFPTG ++ G  GIK AY TGRG IV+R  + IE   G R+
Sbjct: 187 LIKHPDASLEKLMEFIPGPDFPTGGIVQGVEGIKKAYQTGRGRIVVRAKTEIETLRGGRQ 246

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI VTEIPY+VNKA ++++I +L   K++  I + RDE+DR G R+ IELKR A+A  IL
Sbjct: 247 QINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRNANAAGIL 306

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L + T LQ  ++ NMVA++  +P R  L  IL +++AF++EVV RRT Y L+KA+ R 
Sbjct: 307 NYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLAFQKEVVRRRTSYNLDKAQRRL 366

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL  A++ LD+V++ IR S N + A++                +LID  ++     
Sbjct: 367 HIVEGLIKALSILDQVIKTIRASKNRKDAKQ----------------NLIDQYAF----- 405

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                S+VQ  AI+ L+L RLT     ++ +E   L   I E   ILS    L  ++++E
Sbjct: 406 -----SDVQAEAIVTLQLYRLTNTDVTELEDEHQHLNDLIDEYQLILSDDEELSKVVRRE 460

Query: 505 LLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           + +VK E   PRRT+I + +  L+++ +  +  ED+VV VSH GY+KR  +  ++A    
Sbjct: 461 MQAVKKEFGNPRRTQIEDQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASSLD 520

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G     +R++D+   +   +T   +  F++ G V    V  L     +  G+ +   +
Sbjct: 521 EDG-----LREDDYPLLVTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTI 575

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR---SGKIAMKLD 679
            L   E I   M F + +   +    +F T  G V+++   D+   +R      +A+KL 
Sbjct: 576 GLTDNEEIIKAMVFDKLDLPGS---FIFGTSDGQVKQSAYKDYQPGSRYKSHASMAVKLK 632

Query: 680 SRDE-ILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           S D  ++SV+    T EN  LL  ++ G  VRF ++ + V  G  + GVR I+L   D +
Sbjct: 633 SADATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPV-TGLRTAGVRAINLKDDDTL 691

Query: 736 ISMAIV 741
             + +V
Sbjct: 692 ADLVLV 697


>gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 846

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 288/756 (38%), Positives = 424/756 (56%), Gaps = 69/756 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT  ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 21  ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 81  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 140

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP HN
Sbjct: 141 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 200

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+IDNP++  + L +II GPDFPTG  I+   GI++AY  G+G I +RGV 
Sbjct: 201 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIPTQGIEDAYRHGKGIISVRGVV 260

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IE      K   +R  I+VTE+PYQV K+  +EKIA+LV   R+  IAD+RDESDR G 
Sbjct: 261 RIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRSGM 320

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE  
Sbjct: 321 RVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREHT 380

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  Y L + R+R H+L GL IA+ NLD ++ I+R + +  TA+ +  Q         
Sbjct: 381 LTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQE-------- 432

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + LSE Q   IL + + RLTGL R  ++ E + L   I E  
Sbjct: 433 ------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELQGRINELE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-------EDMVVT 541
           ++L++R   L ++K+EL S+K +    RRTRIV+                    ++   +
Sbjct: 475 NLLNNRPEFLKVLKKELRSLKRKYGDERRTRIVQPTAQKSQSKATQTAKKQSSDQNKTTS 534

Query: 542 VSHLGY-VKRVPLSVYRAQRRGGKG------RSGVVMRDEDF-VTDLFI------VSTHT 587
           +S+        P S++  Q            +  +  R  D  V D  +      +    
Sbjct: 535 ISNREPDTTSQPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVPIYSEPIQERE 594

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL------NQGERITTIMPFPEDES 641
             +  + +G  Y   V  +P    Q      I +LSL         +++ ++  F  D +
Sbjct: 595 QFIVITDIGKAYPVNVADVPPIEIQP-----IPLLSLLPKSAQRDSKKVVSLF-FLSDNT 648

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
              +L ++  T  G ++R +LS+   +   G + +KL  +D + SV    +  ++ +   
Sbjct: 649 ENKDLLLL--TNQGKIKRIQLSELAGLTNRGLVLIKLKDQDGLESVSITKEGEEVAIAMS 706

Query: 702 LGQCVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVI 736
            G+ +RFP +  +    GRN+ G + + L  G+ +I
Sbjct: 707 SGRVLRFPVVDEVIPIMGRNAQGNQALKLRYGETII 742


>gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16]
 gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16]
          Length = 807

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 275/716 (38%), Positives = 420/716 (58%), Gaps = 54/716 (7%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K Y K A+  G V+G YHPHG++
Sbjct: 23  YSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPYRKAAKTVGNVIGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+Q+W +R  LI+  GN GSVDGDPPAA RYTE RL   +  L+ DL K TV
Sbjct: 83  SVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYTEARLSAISAELMRDLDKGTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PN+D S +EPVVL A +PN+LVNG  GI+ G AT+IP H+L E++DG   ++  P  
Sbjct: 143 DYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLPEIIDGITLLMQKPHT 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            LD L+EII+GPDFPTG ++ G  GI+ AY TG+G IV+RG + IE+T G R+QIV+TEI
Sbjct: 203 SLDELLEIIKGPDFPTGGIVQGSNGIRQAYETGKGKIVVRGRTAIEETRGGRKQIVITEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+V KA++++K+ E+  +K++  IA++RD++DR G R+V+ELK+ A  + IL+ L++ T
Sbjct: 263 PYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIVVELKKEADPEAILHYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  +  NMVA++   P+   L+ +++A++  +++V  RR+++ L KA DRAH++ GL 
Sbjct: 323 DLQVTYHFNMVAIHNKTPKLMGLLDLMQAYIDHQKQVFTRRSQFELKKAVDRAHIVEGLM 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            AV+ LDEV+ +IR S + + A+  L  +                             +E
Sbjct: 383 KAVSILDEVIAVIRASKDKKDAKANLQSQ--------------------------FGFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I E   IL+S  +L+ +IK+EL  +K  
Sbjct: 417 PQAEAIVTLQLYRLTNTDITTLQKEAEELEKQIAELKAILASEKKLISVIKKELNQIKKT 476

Query: 512 LDTPRRTRI---VEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             +PRRT I   +E +   +DM     I  ED+ VT++  GYVKR  L  Y A  + G G
Sbjct: 477 FASPRRTEIRAEIEEIKINMDM----LIASEDVRVTITKAGYVKRTSLRSYSASSQDGPG 532

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                M++ D +      +T   VL F+  G      V  LP    +  G+ + N+++++
Sbjct: 533 -----MKEGDRLLLSQEANTTDVVLLFTKRGSYLYVPVHSLPDIRWKDDGQHVANLVAID 587

Query: 626 QGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS 680
             + I     I  F E +      Y++F T+ G  +R+ L +  Q  R  K  +A+KL  
Sbjct: 588 ADDEIIAAQIIREFAETK------YLLFMTRAGMAKRSTL-NLYQAQRYSKPLMALKLKE 640

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            DE++ V     + ++ + T  G  + F    + +  G+ + GV+GI+L +GD  I
Sbjct: 641 GDEVVRVLLTDGQQELFVATAFGYGLWFSEEDVSL-VGQRAAGVKGINLKEGDYCI 695


>gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 816

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 296/756 (39%), Positives = 426/756 (56%), Gaps = 73/756 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             D+ EE+ I  + + DEMQ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+ 
Sbjct: 10  PPDDFEER-ILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLR 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+ + DPP
Sbjct: 69  PERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPP 128

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  A   + + + +DTVDF PNYDGS QEPV L A YPN+LVNG  GIAVG
Sbjct: 129 AAMRYTECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVG 188

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGEVV     +I +P+ DLD LM  + GPD PTG  I+G  G+++AY TGR
Sbjct: 189 MATNMPPHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIVGLAGVRDAYETGR 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 249 GSFKIRATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLTDR 308

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 309 AHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+  LM R    
Sbjct: 369 RFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDR---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+VQT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 425 ----------------------FDLSDVQTQYILDTPLRRLTKFDRIELESERDRLNAEI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +  TPRRT ++E          L++ D+ C    
Sbjct: 463 EELTRILDSDAELRKLVSSELATVGKKFGTPRRTVLLESADAPVAAVPLEVADDPC---- 518

Query: 537 DMVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              V +S  G + R     P +  + +R              D +      +    V   
Sbjct: 519 --RVLLSSTGLLARTANGEPFAGEQTKR-----------SKHDVIVSAVPATARAEVGAV 565

Query: 593 SSLGFVYKEKVWRLP-----IGSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNL 646
           +S G + + +V  LP      G+P   G A I   LSL +GE +  +     DESS    
Sbjct: 566 TSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAEFLSLEEGEELICLTTL--DESSPG-- 621

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQC 705
            +   T+ G V+R  + D+       ++ + L   D I+ +VE  T E D++  T     
Sbjct: 622 -LAIGTEQGVVKR-VVPDYPAHKEELEV-IGLKEGDRIVGAVELRTGEEDLVFITDNAHL 678

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R+P   +R   GR + G+ G+ LA   +VIS   V
Sbjct: 679 LRYPAGQVRP-QGRAAGGMAGVKLAPDAKVISFTAV 713


>gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
 gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
          Length = 821

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 283/735 (38%), Positives = 432/735 (58%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R  + 
Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKTE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDR+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IELK
Sbjct: 246 IETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RRT+Y
Sbjct: 306 RGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L+ + +N            
Sbjct: 366 NLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLV-KEYN------------ 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +  Q  AI+ L+L RLT     +++ E   L   I E   IL++ +
Sbjct: 413 -------------FTPEQAEAIVTLQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNEN 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            L  ++ +E+ ++K E   PRRT+I E L   L+++ +  +  ED+VV VSH GY+KR  
Sbjct: 460 ELAKVLTKEIRAIKKEFGNPRRTKI-ENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  ++A      G     +R++D+   +   +T + +  F++LG +    +  +     +
Sbjct: 519 IRSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWK 573

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670
             G+ +   + L   E I   M F + +       ++  T  G V++   +D+   +R  
Sbjct: 574 DTGEHISQTIGLADNEEIIKAMIFDKLDQPGT---IIMGTSDGQVKQTAFNDYKPGSRYK 630

Query: 671 -SGKIAMKLDSRDEILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    ++++V+    T EN  LLT ++ G  VR+ ++ + V  G  + GVR 
Sbjct: 631 SHASVAIKLRDNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPV-TGIRTAGVRA 689

Query: 727 ISLAKGDQVISMAIV 741
           I+L   DQV    +V
Sbjct: 690 INLKDDDQVADQILV 704



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT+S +G+  R    D  ++     G+RA ++   +++   +    V D   I +++ +
Sbjct: 660 LLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQIL---VKDGQDIAVITQR 716

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887
           G    +PV+EI + +RA +G ++    K
Sbjct: 717 GAFKEMPVDEIEVGARARRGELVLRRLK 744


>gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 825

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 284/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 9   IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE RL
Sbjct: 69  KAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPTHNL
Sbjct: 129 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R  + 
Sbjct: 189 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ IELK
Sbjct: 249 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 308

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RRT++
Sbjct: 309 RGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRRTRF 368

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+                 
Sbjct: 369 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            ++Y          +  Q  AI+ L+L RLT      +  E   L   I+    IL+   
Sbjct: 412 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 462

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++K+E+ ++K E   PRRT+I + +  L ++    +  E+++V VS  GY+KR  +
Sbjct: 463 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEEVIVLVSAAGYIKRSSI 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612
             ++A   G  G     +R++D+   L   +T + +  F++ G F+Y+  V  L     +
Sbjct: 523 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670
             G+ L   + L+  E I   M    D+      + +FAT  G V+++ LSD+   +R  
Sbjct: 577 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 633

Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    +++SV+    E     +L  ++ G  +RF +  + V  G  + GVR 
Sbjct: 634 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 692

Query: 727 ISLAKGDQVISMAIVLHADADY 748
           I+L + DQ++   I L  D D+
Sbjct: 693 INLKEDDQLV--GISLAGDGDH 712


>gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
 gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
          Length = 838

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 286/754 (37%), Positives = 424/754 (56%), Gaps = 63/754 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT  ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP HN
Sbjct: 133 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+IDNP++  + L +II GPDFPTG  I+   GI++AY  G+G I +RGV 
Sbjct: 193 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQTQGIEDAYRHGKGIIPVRGVV 252

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IE      K   +R  I+VTE+PYQV K+  +EKIA+LV   R+  IAD+RDESDR G 
Sbjct: 253 KIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE  
Sbjct: 313 RVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREHT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  Y L + R+R H+L GL IA+ +LD ++ I+R + +  TA+ +  Q         
Sbjct: 373 LTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQE-------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + LSE Q   IL + + RLTGL R  ++ E + L   I E  
Sbjct: 425 ------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELAGRINELE 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVT 541
           ++L++R   L ++K+EL S+K +    RRTRIV+                    +++   
Sbjct: 467 NLLNNRPEFLKVLKKELRSLKRKYGDQRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTTA 526

Query: 542 VSHLGYVKRV-PLSVYRAQRRGGKG------RSGVVMRDEDFVTDLFIVSTHTSV----- 589
            S     K   P S++  Q            +  +  R  D       VS ++       
Sbjct: 527 TSDKETEKTTRPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQERE 586

Query: 590 --LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN---QGERITTIMPFPEDESSWN 644
             +  + +G  Y   V  +P    Q     L+++LS       +++ ++  F  D +   
Sbjct: 587 QFIVITDIGKAYPVNVADVPPIDIQP--IPLLSLLSKTAQRDSKKVVSLF-FLSDTTDNK 643

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           +L ++  T  G ++R +LS+   +   G + +KL  +D + SV    +  ++ +    G+
Sbjct: 644 DLLLL--TNQGKIKRVQLSELEGLTNRGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGR 701

Query: 705 CVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +RFP +  +    GRN+ G + +    G+ ++S
Sbjct: 702 VLRFPVVDEVIPIMGRNAQGNQALKSRYGETIVS 735


>gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta]
 gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta]
          Length = 877

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 293/850 (34%), Positives = 482/850 (56%), Gaps = 60/850 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +  + +EM  SY+ YA++VI GRA+PD+RDGLKPVHRRILF M ++ +     Y KCA
Sbjct: 65  IINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKCA 124

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A+YD+L RM+Q++S+R +LI G GNFGS+D DPPAA RYTEC+L
Sbjct: 125 RVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMRYTECKL 184

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +   LL +L   TV++  N+DGS  EP ++ +  P++L+NG  GIAVGMAT+IP HN
Sbjct: 185 SNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPHN 244

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+V  C+A+IDN +I    L++ +  PDFPTG +I+G    K+ Y  G  SI++RG  
Sbjct: 245 LGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSIILRGKI 304

Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           ++E +       +  +++TEIP+Q+NK+ ++ K+A+LV  K I  I+D+RDESDR+G R+
Sbjct: 305 NVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKGIRI 364

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR      I+  + + +SLQ  FS  M+ +   +P    L  IL  F+ FR +++ 
Sbjct: 365 VIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHFRRKIIR 424

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +  K+ L     + ++L G++I++  +D  +  I+ S N   A+  LM+           
Sbjct: 425 KNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME----------- 473

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q+ AIL L+L RLT L    I N+       + E   I
Sbjct: 474 ----------------FGLSQEQSEAILNLQLRRLTKLESKKIDNDFEITKSSLNELKCI 517

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           LSS   + GIIK ++ ++ +    PR+T ++  + +  +E+ + I   + V+ ++   Y+
Sbjct: 518 LSSNILIDGIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIENYESVIMITQY-YI 576

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++ L  + +Q RG KG+ G+++ D D ++  F  +    ++  SS G  YK KV R+PI
Sbjct: 577 KKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPI 636

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ++G  +++IL   +  +I++I+     E+     ++V  T+ G ++R  +S+F  I
Sbjct: 637 SKRNSKGTPILSILKGLENNQISSIIATSNCETEK---FLVLLTQKGLIKRTSISNFNNI 693

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727
           +  G I + LD  D +  V  C  ++ ++++TK G+ +RF  S   + + GR S G++ I
Sbjct: 694 SSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSI 753

Query: 728 SLAKGD----------QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            L   D          Q I+  I+L  +  Y +RI  +  +  Q+R   G   ++ SL+ 
Sbjct: 754 DLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRI-KVTELKIQKRGKKGI--KVISLRE 810

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSK 834
           + + +  IS   C E    E+ +++ S     K+  S D  +  ++ KGI   R T+  K
Sbjct: 811 NVN-DYLISSRFCIE---NEEILISTSYGNVVKQKIS-DIAVQKKNSKGIIIQRLTEGDK 865

Query: 835 INEIGALVAV 844
           +++I  + +V
Sbjct: 866 VSKISIINSV 875


>gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
 gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
          Length = 820

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 281/772 (36%), Positives = 454/772 (58%), Gaps = 49/772 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG + +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 414 ------------------FTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  TPR T I   +  + +E +  + +E++VVTV+  GYV
Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L Q E I  +  + E +   N    V  +K+G +++ ++++F +
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEF-E 626

Query: 668 INRSGK----IAMKL-DSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL D  DE+++V     T+E D+ L + L   +R+P++ + V  G  
Sbjct: 627 PWRTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYPLNEVPV-VGPK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           + GV+ ++L   D +I+  +V    ++ D  I  +    A +R+++ +  ++
Sbjct: 686 AAGVKAMNLKADDYLINGLLVY---SEGDTPIVLITQRGAAKRMLAQEINQL 734


>gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 820

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 286/775 (36%), Positives = 454/775 (58%), Gaps = 52/775 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHRSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG V +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 414 ------------------FTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L+  S LL +IK+EL  +K +  TPR T I   +  + +E +  + +E++VVTV+  GYV
Sbjct: 456 LNEESELLKVIKKELREIKKKYSTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L Q E I  +  + E +   N    V  +K+G +++ ++++F +
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEF-E 626

Query: 668 INRSGK----IAMKL-DSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL D  DE+++V     T+E D+ L + L   +R+ ++ + V  G  
Sbjct: 627 PWRTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEVPV-VGPK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + GV+ ++L   D +I+  +V    ++ D  I  +    A +R+++   +EIT L
Sbjct: 686 AAGVKAMNLKADDYLINGLLVY---SEGDTPIVLITQRGAAKRMLA---QEITQL 734


>gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 793

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 302/893 (33%), Positives = 475/893 (53%), Gaps = 122/893 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K A
Sbjct: 4   IKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE +GK+HPHG+A++YDAL RMAQD+++R  LIEGQGNFGS+DGDPPAA RYTE RL
Sbjct: 64  RVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP HN 
Sbjct: 124 TKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPHNF 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
            EV +    + + PD  ++ L   I+GPDFPTG VI   +  + + Y + RGSI I+G +
Sbjct: 184 TEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKGKA 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G+R++IV+ EIPYQVNK  +++KIAELVR  +   I+DLRDESDR G R+VIEL
Sbjct: 244 RIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+ +L +LY+ T L+  F VN+  L   +P    L  +L+ F+  R E++ RRT 
Sbjct: 304 KRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRRTL 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +R H++ GL  A+ N D+V+ I+R S +   AR EL+   +N           
Sbjct: 364 FELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQAR-ELLTSQFN----------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q  AIL++RL+R T L    +++E   L  +I+    ILSS 
Sbjct: 412 --------------LSETQANAILDMRLSRFTSLETQKLKDESTELKQKIERYKQILSSD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +  +E   +  +    R+T I        +++   +E  +  + + G +      
Sbjct: 458 DEKIKVFIEETDELVRKYGDQRKTTIAT------EKELTFKEHFMFAILNTGRIVN---- 507

Query: 555 VYRAQRRGGKG--------RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            Y+ +    K            + + + + +  +  V     + FF+  G  Y    W L
Sbjct: 508 -YKVEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAY----WSL 562

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            I  P+   K  +NI    +GE + T     + E   N ++++  TK G ++R    D I
Sbjct: 563 VIDLPKGEDK--LNI----EGEIVGTAY---QGEGEENRVFLI--TKKGIIKRMSDED-I 610

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                G + M L+  DE++        + I + TK    + F  + +R+  G  + GV  
Sbjct: 611 FYKSQGHMVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRI-TGDKAKGVEA 669

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D+ ++ A  L+                                           
Sbjct: 670 IDLDENDE-VAGAFFLNG------------------------------------------ 686

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      +++L  +  G+ K     +F I  R+ KG+ A    K+N+   +V++ P
Sbjct: 687 ----------HEYLLVSTSFGYMKHVEKTEFPIKKRAQKGLMAV---KLNKGDYVVSILP 733

Query: 847 VNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897
           VN++D++++ + +G L+++ +++  I I  R + G  +F    D R+V+V ++
Sbjct: 734 VNESDEVLINTKRGKLLKLKIDKEAIPIEKRTSLGKNLFRFEAD-RIVNVLKL 785


>gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
          Length = 766

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/754 (39%), Positives = 425/754 (56%), Gaps = 84/754 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + SYL YA++VI+GRAIPD+RDGLKPV RRIL+ M +M +  +K + KCARI G+ MG+Y
Sbjct: 13  RQSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRY 72

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ AIYDAL RMAQD++LR  L+ GQGNFGS+DGDPPAA RYTE +L K    LL+D
Sbjct: 73  HPHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLED 132

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +  DTVDF PN+D S  EP VL A+ PN+L NG  GIAVG+AT+IP HNL EV D  VA+
Sbjct: 133 IENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVAL 192

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
             N DI ++ LM+ I+GPDFPTG +I+G       Y TGRG + ++  + +EKTS  REQ
Sbjct: 193 AQNQDITVEELMQYIKGPDFPTGGIIVGEVS-PEVYKTGRGQVTVQAKARVEKTSSGREQ 251

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I++TEIPY VNKA +++KIAEL R  ++ +I+DLRDESD++G R+VIELKR A  + +L 
Sbjct: 252 IIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELKRDAKGEAVLK 311

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +LY+ TSL+  F +NMVAL G +P+   L  IL  F   R  V+ RRT++ L KA +R H
Sbjct: 312 KLYKNTSLRKNFPINMVALVGLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEERLH 371

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           ++ GL I + ++D+++  IR S + + A+ +LM   WN                      
Sbjct: 372 IVEGLLICIKDIDKIIETIRASQDTQEAKEKLMS-GWN---------------------- 408

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+E Q +AIL+LRL RLT L    ++ E + L   IK   +IL ++   + I  +E 
Sbjct: 409 ---LTEKQAQAILDLRLQRLTSLETSKLQKEHDELIENIKTYKNILENKQERINIFIKET 465

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR---- 561
             + D    PRRT  +EG++    ED  V     V V+  G+VK  P+ +   ++     
Sbjct: 466 KELADRFKDPRRT-FIEGMI---KEDTYVD----VFVTRNGFVK--PIELLEEEKSPIVN 515

Query: 562 -------------GGKGR------------SGVVMRDED-FVTDLFIVSTHTSVLFFSSL 595
                          KGR            S + M+D D  V   F+   + S L     
Sbjct: 516 VASLKFTEGLFIVSNKGRVYWTAGSEALSGSSIHMKDTDEHVVGAFVREQYNSRLLI--- 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
               K  + ++P+   + + +    IL L++GE +  I    +DES      ++  TK G
Sbjct: 573 -LTNKGSIKKIPLVEFEYKTQGF-QILKLSEGEEVVYISG-SQDESE-----ILILTKKG 624

Query: 656 NVRRNKLSDFIQINRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            + R +  D      S K    +KL+  DE +SV     +   LL T+ G   +  +  I
Sbjct: 625 YINRIQTQDVGATTSSSKAIQCIKLNENDEAISVRALDDKIFGLLITEEGYAKKIKLEDI 684

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                + S   +GI++ K   + +  ++ + D D
Sbjct: 685 ----PKKSRTSQGINVLKQKFLNACDLIFYNDDD 714


>gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 758

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 275/723 (38%), Positives = 424/723 (58%), Gaps = 63/723 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI    IT+E++ SY+ YA++VI+GRA+PD+RDGLKPV RRI++ M + G  +N  Y K 
Sbjct: 3   GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+A++YDAL RMAQD+ +R  L++G GNFGS+DGDPPAA RYTE R
Sbjct: 63  ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +L+ DL KDTV++ PN+DGS +EP VL A +P +LVNG  GIAVG++T IP HN
Sbjct: 123 LTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  +  + NP+     LM  ++GPDFPTG  I+    +   Y  G+G I +RG +
Sbjct: 183 LGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGRA 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+  G + ++V+ EIPY VNKA ++ +IA+L+R++++  + ++RDES+RQG RVV+EL
Sbjct: 243 KLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+GAS   ILNQLY  T+L++ F++NMVAL    P + TL   + +FV FR+E ++RRT+
Sbjct: 303 KKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRRTR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL+KA  R  V+ G+  A+ N+D V+ IIR +   + A+R LM +              
Sbjct: 363 YLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQ-------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 IG      L+EVQ  A+LE++L  L  + ++ +  EL SL   I E  +IL+S 
Sbjct: 409 ------IG------LTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-IVREDMVVTVSHLGYVKRVPL 553
           ++LL +I +EL  VK      RRT I  G  D + E      E   + +   G ++R   
Sbjct: 457 TKLLEVIAEELKHVKKLFADQRRTLI--GFSDQQTETVQAAEETFFIELLEYGIIRR--- 511

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
                     K ++ +V    DF+     V     V+F ++ G ++    + +P      
Sbjct: 512 ---------SKTQTNLV----DFIE----VQGSDPVMFLTNFGKIFCISAYEIP---ESQ 551

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG AL  +  +   E++  +           N  ++  ++ G  +R +L D  +I   G 
Sbjct: 552 RGVALNALFPMGNDEKVLLL--------GTQNQELIAISEKGKGKRFRL-DVEKIPSRGG 602

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
               LD  D ++SV       ++++ +  G+ +R  + +I    G  + GV+ +   +GD
Sbjct: 603 YYFLLDPGD-MVSVIVPVTSKELVVISAQGKALRLDVESIPE-RGLRTGGVKVMRTYEGD 660

Query: 734 QVI 736
           +V+
Sbjct: 661 RVV 663


>gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 830

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 277/725 (38%), Positives = 424/725 (58%), Gaps = 43/725 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  W+K Y K A+  G V+G 
Sbjct: 24  MGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMFVDGNTWDKAYRKSAKTVGLVIGN 83

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++YDA+ RM+QDW +R   I+ QGN GS+D DP AA RYTE RL K + +LL 
Sbjct: 84  YHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSIDDDPAAAMRYTEARLGKISEYLLQ 143

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV + PN+D +  EP VL ARYPN+LVNG  GIA G ATNIP HNLGE +D  + 
Sbjct: 144 DIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHNLGECIDASIY 203

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I +PD  LD LME ++GPDFPTG ++ G  GIK+A+ +G+G I++R    IE+T    +
Sbjct: 204 RIQHPDCTLDDLMEFVQGPDFPTGGIVQGLDGIKDAFTSGKGRIMVRSKVSIEQTKT-VQ 262

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+V EIPY+V K+ M++KI ++   K+I  I D+RDESDR G RVVI+LK+ A A +IL
Sbjct: 263 QIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVRDESDRNGLRVVIDLKKDADAQLIL 322

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T LQ  ++ N++A+   +P +  L  +L AF+A R EV++RR+ + L+K   R 
Sbjct: 323 NYLYKNTDLQVSYNYNVIAIKDKRPVQMGLAAMLDAFIAHRREVILRRSAFDLDKKEKRC 382

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL  AV+ LDE++ +IR S +   ++ ++++                         
Sbjct: 383 HILEGLIKAVSILDEIIALIRSSKDKADSKVKIIE------------------------- 417

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                SE Q  AI+ +RL RL+      +R E  +L  EIKE  +IL    +L  ++  E
Sbjct: 418 -AFGFSEPQAEAIVTMRLYRLSNTDITQLREEFANLQAEIKELHEILEDPKKLKKVMVAE 476

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK    TPR T+I   + ++  +    I +E ++ T+S  GYVKRV +  Y A    
Sbjct: 477 LKEVKKAFPTPRLTKIEHEIEEIVIDKVAMIPQEQVMFTISRDGYVKRVSMRSYGAANDA 536

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G     +++ D +     V+T  ++LFF+S G      V+ +     +  G  + + +
Sbjct: 537 MTG-----IKEGDHLIGYGEVNTLDNILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKI 591

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA--MKLDS 680
            +   E+IT      + ++   N Y++  T+HG V++  + ++ +++R+ K    MKL  
Sbjct: 592 KITSDEKITDAFIVKDFKT---NSYMISITRHGLVKKTAICEY-EVSRNNKTMSNMKLLE 647

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            DE++      +E++IL+ +K G   R+PIS I   + R S GV+ ++L + +  I+ A+
Sbjct: 648 DDEVVQTYVAYEEDEILIASKKGYITRYPISLIPATSPR-SKGVKAMNLVEDE--IASAL 704

Query: 741 VLHAD 745
           + + D
Sbjct: 705 IYNND 709



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +EQ + T+S  G+ KR S   +  +N +  GI+  D         L+    VN  D I+ 
Sbjct: 509 QEQVMFTISRDGYVKRVSMRSYGAANDAMTGIKEGD--------HLIGYGEVNTLDNILF 560

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            + KGT   VPV E+  A     G  I S  K   + S E+I ++ IV + ++
Sbjct: 561 FTSKGTYGYVPVYEVDDAKWKEIGSHINSKIK---ITSDEKITDAFIVKDFKT 610


>gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99]
          Length = 819

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 281/746 (37%), Positives = 444/746 (59%), Gaps = 51/746 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  ++L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKERDHAIFIQKMNSLDTLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I     I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRAAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+L+V       DI L T+ G  +R+PI+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKDDDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVLHADADY 748
           GV+ I+L +GD V+   ++   DA +
Sbjct: 684 GVKAINLKQGDIVVGGVVLREGDAKH 709


>gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
 gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
          Length = 818

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 286/732 (39%), Positives = 430/732 (58%), Gaps = 42/732 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G    K++ 
Sbjct: 4   QQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ R++QDW LR +L+E  GN GS+DGDP AA RYTE
Sbjct: 64  KSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL DL K TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT IPT
Sbjct: 124 ARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +  ID+P   +  LM+ ++GPDFPTGA+I G   ++ AY TG+G +V+R 
Sbjct: 184 HNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGAIIQGIDELEQAYETGKGKVVVRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G + QIVVTEIPY+VNKA +++KI E+   K+I  IA++RDESDR G ++VI
Sbjct: 244 KTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ ILN L + T LQ  ++ NMVA++  +P +  L  IL +++A ++EV+ +R
Sbjct: 304 ELKKEANAEGILNYLLKNTELQINYNFNMVAIDARRPMQVGLKKILDSYIAHQKEVITKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA+DR H++ GL  A++ LDEV+ +IR S + + A+ +L++             
Sbjct: 364 TQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVE------------- 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                +Y    D TM     Q  AI+ L+L RLT      ++ E   L   +     IL 
Sbjct: 411 -----TY----DFTM----TQAEAIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILK 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   LL ++KQEL  +K +  TPR T I   +  + +E E  I  E++ V  +  GY KR
Sbjct: 458 SEKTLLQVMKQELRELKKKYATPRLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V    + +      G     +R+ D V  +  VST  S++ F+S G      V  +P   
Sbjct: 518 VSPRSFASSAPEENG-----LREGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFATKHGNVRRNKLSDF---- 665
            +  G  L   +SL   E I   M   +D + ++ +  VVF TK G V++  +++F    
Sbjct: 573 WKDVGHHLSQSISLATNEIILAGMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEFNTYR 632

Query: 666 -IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
             +   S  I +K  + DE++++E    QE +I + T  G  +R+ +S + V  G  + G
Sbjct: 633 GYKTRTSNAIKLKT-ATDEVVAIELVPNQEQEIFIVTHCGFGLRYELSEVPV-VGTVASG 690

Query: 724 VRGISLAKGDQV 735
           V+ I+L K D V
Sbjct: 691 VKAINLRKDDFV 702



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 24/280 (8%)

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +I T +  PE+E     +YVV ATK G  +R     F     S      L   DE+L V+
Sbjct: 493 KIETEILIPEEE-----VYVV-ATKQGYYKRVSPRSFAS---SAPEENGLREGDEVLLVQ 543

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHAD 745
             +  + ++L T  G  +  P+  I   A    VG    + ISLA  +++I   +V   D
Sbjct: 544 KVSTLDSLVLFTSKGNYLHLPVHEIPE-AKWKDVGHHLSQSISLAT-NEIILAGMVKEKD 601

Query: 746 AD---YDERICYMKH--MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL---KE 797
           ++    D  + +     +  Q  +   +T      +  ++++   + +    ++L   +E
Sbjct: 602 SNDAYQDWTVVFFTKEGLVKQTAMNEFNTYRGYKTRTSNAIKLKTATDEVVAIELVPNQE 661

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q I  V+  GFG R    +  +      G++A ++ K + +   +   P +      L +
Sbjct: 662 QEIFIVTHCGFGLRYELSEVPVVGTVASGVKAINLRKDDFVAGAMVYSPESKVVSAFLAT 721

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVE 895
            +G++ R  V E+ + +RA +G+++    K+   RVV ++
Sbjct: 722 QRGSVKRFNVLEVSMLTRAKRGLMVLRELKNNPHRVVYLD 761


>gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
 gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
          Length = 833

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 298/891 (33%), Positives = 486/891 (54%), Gaps = 121/891 (13%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARISG 79
           I D M+++Y+ YA++VI+GR++PD+RDGLKPV RRIL+ M   +     K Y K ARI G
Sbjct: 13  IVDIMKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEKPYKKSARIVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+AA+YD + RMAQD+  R  LI+GQGNFGS+DGD PAA RYTE R+ K A
Sbjct: 73  DVIGKYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMRYTEIRMTKIA 132

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDTVDF PNYDGS +EP VL  + PN+L+NG  GIAVGMATNIP HNL EV+
Sbjct: 133 EEMLKDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATNIPPHNLKEVI 192

Query: 200 DGCVAVIDNP-------------------DI---DLDALMEIIRGPDFPTGAVILGRTGI 237
             C+ ++ N                    DI     + +M I++ PDFPTG +I+    I
Sbjct: 193 KACLYLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPTGGIIINSKDI 252

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  G GSI I+      K   +++QI++TE+PY VNK+ ++ KIA+L +  +I  IA
Sbjct: 253 PKIYRNGTGSIKIKA-----KIEVNKDQIIITELPYMVNKSDLIIKIADLSKSNKIQGIA 307

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D++DES +   R+VI+L++    +++LNQLY+YT L + FS N V +   KP +  ++ +
Sbjct: 308 DIKDESTKD-IRIVIKLRKKTDPNIVLNQLYKYTQLTTTFSCNFVGIYKNKPYQLNILDL 366

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F++FR +++ RRT++LL K +++ H L GL IAV N+D  V+II+ + N   A ++L
Sbjct: 367 LFNFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTAKNTTDATQKL 426

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M++                            L ++Q   IL +RL RLT L  + + NE 
Sbjct: 427 MKKYK--------------------------LDDIQVNEILNMRLQRLTSLEIEKLLNEY 460

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVR 535
                 I+   +IL+S  + + +I  EL  ++     +  R T++ +  +  + ++ I  
Sbjct: 461 QETKENIQTYKEILNSYDKQIELIINELHDLQKNYCKNDKRLTKLEDEDISFDIKNLIPD 520

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST--HTSVLFFS 593
             +++  +  G++K+  +S     +    G++  + +++   +  FI++T  H  +L F+
Sbjct: 521 NPVIIIYTDDGFIKKENIS-----KVTKTGKTTNLQKND---SAKFIINTTNHKKLLLFT 572

Query: 594 SLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
             G +Y   V+ +P  GS  ++G  + N++ LN  ++I  I      E+ ++N  +V  T
Sbjct: 573 DTGKLYYLNVYDIPETGSGNSKGTHISNLIKLNTNDKIVLIRTQIH-ENEYSNYDMVCIT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
           + G V+R  L ++ + +++G + +KL+S D++L V      +EN +L+ +K  + + F I
Sbjct: 632 EKGLVKRTSLEEY-KNSKNGSLVLKLNSDDKLLKVFFINKQEENYLLMLSKQSKYIIFNI 690

Query: 711 SAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + +R  A R + GV G+ L  + D+++  AI+              K M           
Sbjct: 691 NQVRTVA-RLAKGVVGMLLNNENDKIVDCAII-------------TKPM----------- 725

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                L+N +                 E  + T++ KGF K T   ++ + NR  KG   
Sbjct: 726 -----LENPN-----------------EYLLCTITNKGFIKLTPLEEYSVQNRKTKGSYV 763

Query: 830 TDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             V+       LV +   N   +  IL+++ G LI++ +N I + +R + G
Sbjct: 764 MKVTNKTGEPILVQILAKNSKTNNCILITNTGQLIKIDINNISVTNRVSTG 814


>gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
 gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
          Length = 817

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 293/834 (35%), Positives = 471/834 (56%), Gaps = 59/834 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E++  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G    K 
Sbjct: 2   EKKHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKS 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TV+F  N+D + +EP VL + +PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+DG + +ID+PD  L+ LM  I GPDFPTG ++ G   IK AY TG+G +++
Sbjct: 182 PTHNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGILQGADEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++QIV++EIPY+VNKA +++++ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++  +P++  L  +L ++VA R+ V++
Sbjct: 302 VVELKKEVNAEGILNYLFKNTDLQVNYNFNMVAIDQMRPKQVGLKQMLSSYVAHRQSVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y L KA  R H++ GL  A++ LDEV++ IR S +   A+                
Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKN--------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +LI   ++T          + Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 407 -NLILAHAFT----------QEQAEAIVTLQLYRLTNTDITQLQQEAEELLATIAELQKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           +   + L  ++K+EL  VK +  + R T I   +  L ++ E  + +ED++V V+  GYV
Sbjct: 456 IQDSTELFKVMKKELREVKKQYQSERLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A      G     M++ D V     ++T   +L  +  G +    V  LP 
Sbjct: 516 KRSSLRSYSASNNEEAG-----MKESDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ L   L +L   E I T++P+ +  ++     ++  T+ G ++R KLS+F  
Sbjct: 571 LRWKDVGEHLSQALTTLKIEENILTVLPYKQLSTTQE---LLILTQAGMIKRTKLSEFTP 627

Query: 668 INRSGK------IAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRV 715
             R+ K      I +K    D+++SV      E  TQ  DI + +     +R+ ++ + V
Sbjct: 628 W-RTYKTRPLPFITLK-QEEDKVISVMVIEPQEIATQ--DIFMVSNRAYGLRYAVTDVPV 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GV+ ++L + D  +  AI++H D D    +  +    A +R+++ +  + +  
Sbjct: 684 VGPR-AAGVKAMNLKEDDATVVQAILVHTDGDTP--VVIITQRGAAKRMLAQELPQTSRA 740

Query: 776 KNDSSVEGNISEERCQELKL---KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +    V   +     + + +    E  +L  ++KG  K   +  F I++R+  G
Sbjct: 741 QRGIMVLRELKNHPHRIIYMGLGDETELLLTNQKGDKKEVQANQFPIADRTSNG 794



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  ++ V+ +G+ KR+S   +  SN    G++ +DV        +V    +N  D ++L
Sbjct: 502 QEDVMVVVTREGYVKRSSLRSYSASNNEEAGMKESDV--------VVYKGQLNTLDHLLL 553

Query: 856 VSDKGTLIRVPVNEI 870
           V+DKG +I  PV+E+
Sbjct: 554 VTDKGNMIYRPVHEL 568


>gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 703

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 287/743 (38%), Positives = 419/743 (56%), Gaps = 104/743 (13%)

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--G 261
           A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  S +E     G
Sbjct: 1   ALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVG 60

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVVIEL+RG   +
Sbjct: 61  GRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPE 120

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV RRT + L KAR
Sbjct: 121 VILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKAR 180

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID------ 435
           +R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + ++++         
Sbjct: 181 ERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRP 240

Query: 436 ---DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  +I E + IL+
Sbjct: 241 ENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILN 299

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+SH GY K  P
Sbjct: 300 SATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQP 359

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K + +P  S  
Sbjct: 360 LAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRA 419

Query: 613 ARGKALINILSLNQGERITTIMPF----------------------PEDESSWNN----- 645
           ARG+ L+N+L L+ GE ITT++P                        E+ S         
Sbjct: 420 ARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKAR 479

Query: 646 ---------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                     ++  +T +G V++  L  F +   SG IA++LD  D ++S      E +I
Sbjct: 480 IKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEI 539

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM                  
Sbjct: 540 MLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML----------------- 581

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                       I EE  Q        ILT SE+G+GKRT+  +
Sbjct: 582 ----------------------------IPEEGSQ--------ILTASERGYGKRTAISE 605

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  V E+    R 
Sbjct: 606 FPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRN 663

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +   A DE++V +ER++E
Sbjct: 664 TQGVTLIKLASDEKLVGLERVQE 686


>gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
 gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 308/896 (34%), Positives = 470/896 (52%), Gaps = 93/896 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K + K A+  
Sbjct: 10  LPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKGFRKSAKTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG+ ++YDA+ RM+QDW +R LL+E  GN GS+DGDPPAA RYTE RL   
Sbjct: 70  GNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRYTEARLSAL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL D+ K TV+F PN+D +  EP VL A YPN+LVNG  GI+ G AT+IP H+L E+
Sbjct: 130 SSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDIPPHHLNEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG +  +D PD  +D LME I+GPDFPTG +I G  GIK AY TGRG I++RG +  E 
Sbjct: 190 IDGVILRMDKPDCSIDDLMEHIKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRGKAEFED 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++KI E   ++++  IA++RDE+DR G R+VIELK+ A
Sbjct: 250 LRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRIVIELKKDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             + +L+ LY+ + LQ  ++ NMVA++   P+   L  +L A++  R+EVV RR+++ L 
Sbjct: 310 DPEGVLHYLYKNSDLQIPYNFNMVAIHNRHPKLMGLRELLDAYIGHRKEVVTRRSQFELQ 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL  A++ LDEV+  IR S +   A+  L+ +                  
Sbjct: 370 KAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAK------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      +R E   L   I E   IL S  +L 
Sbjct: 412 --------FEFTEPQAEAIVSLQLYRLTNTDITALRAEAEDLAKLIGELKSILESEKKLF 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+EL  VK      RRTRI   + +++   E  +  ED++VTV+  GYVKR     +
Sbjct: 464 SVIKKELRDVKKRFADERRTRIEAEIEEIKINLEVLVASEDVIVTVTKEGYVKRTSQRSF 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M+D D +     ++T   +L F++ G      V +LP    +  G+
Sbjct: 524 AASNGQDFG-----MKDSDRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPDIRWKDLGQ 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
            + NI+ +++ E I   +P  + E+     Y++F TK+G V++ +L  + +  R  K  +
Sbjct: 579 HIANIIPIDRNESIVRAIPVKDFETEE---YLLFMTKNGMVKKTELKAY-KAQRYSKPLV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ +   DE+L V       +I L T  G  + F    + +   R + GV+GI+L  GD 
Sbjct: 635 AVNVKGTDEVLDVYLTDGTKEIFLATHQGFGLWFHEEEVSIVGAR-AAGVKGINLKDGDF 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V                        A  +LI    E                        
Sbjct: 694 V------------------------AGAQLIEDQKE------------------------ 705

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              Q ++ V+++G  K+    +F  ++R+ +G+      K N    +V    V    ++ 
Sbjct: 706 ---QSVVIVTQRGSIKKMKLSEFERTSRAKRGVVMLRELKSNP-HRIVGCVIVRSKHELY 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++KG +  V V+ IR   R + G  I   ++  +   + R    E VD++  TE
Sbjct: 762 IETEKGHIEAVNVSSIRFNDRYSNGSFIIDESESGKAKCIWRAEVKE-VDDSHVTE 816


>gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 806

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 297/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSEYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVAGLMKALSILDEVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      +  E   L  +I E   IL S  +LL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLL 462

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T   VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E +   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+GI+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSP-VGVRAAGVKGINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+++ D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GRALNSEKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      FR  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEV 797



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +   +N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKGINLKEDDYVASGRALNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
 gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
          Length = 827

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/737 (36%), Positives = 435/737 (59%), Gaps = 42/737 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++E +  +   S+ D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  +N
Sbjct: 3   EKEVKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +   LI+ QGN GS+D DP AA 
Sbjct: 63  KPYHKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + + FLL D+ KDTV++ PN+     EP VL AR+PN+LVNG  GIA G AT
Sbjct: 123 RYTEARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+   +  I +PD  L+ LM+ ++GPDFPTG +++G  GIK A+ TGRG +
Sbjct: 183 NIPPHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVMGLDGIKQAFQTGRGRV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR    +      + QI++ EIPY+V K+ +++KI E+   K+I  I D+RDESDR G 
Sbjct: 243 LIRSKVEVVPLRTIK-QIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V++LK+ ++ + ILN LY+ T LQ  ++ N++A+    P + +L  +L AF++ RE+V
Sbjct: 302 RIVVDLKKDSNDEQILNYLYKNTDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHREDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR+K+ L   ++RAH+L GL  AV+ +DE++ IIR S +   A++ L++R        
Sbjct: 362 VIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                +E Q  AI+ +RL RLT     +++ E   L  +I E  
Sbjct: 414 ------------------FDFTEKQAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLG 546
            I+  +S L  ++ +EL  V  E +TPR ++IV  + +  ++++  I +E+ ++TV+  G
Sbjct: 456 KIIRDKSELHKVMVEELEKVNAEFNTPRLSKIVHEVKEIVIDEKAMISKEECMITVTRDG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KRV +  + A       R     +D D +       T  +++FF++ G      V+++
Sbjct: 516 YIKRVSMRSFNASSDSMTQR-----KDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQI 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +  G  + N + ++  E+I         ++    ++VV A++HG ++R +L +F 
Sbjct: 571 EEAKWKDLGGHISNYIKMDSSEKIIAAYVL---DAFKTGVHVVSASRHGMIKRTELKEF- 626

Query: 667 QINRSGK--IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +++RS K    MK+   DE++SV    + +D ++L ++ G  + +P+  I + + + S G
Sbjct: 627 EVSRSNKTMTCMKIGGMDEMISVSLSYKPDDQVILVSEQGYGLMYPVEQIPLVSNK-SKG 685

Query: 724 VRGISLAKGDQVISMAI 740
           V+ ++LAK D V S+ I
Sbjct: 686 VKAMNLAKDDCVASICI 702



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +++ S  G  KRT   +F +S RS K +    +  ++E+ ++   +    +DQ+ILVS++
Sbjct: 609 VVSASRHGMIKRTELKEFEVS-RSNKTMTCMKIGGMDEMISVSLSY--KPDDQVILVSEQ 665

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G  +  PV +I + S  +KGV   + AKD+ V S+
Sbjct: 666 GYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASI 700


>gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
 gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
          Length = 817

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/731 (38%), Positives = 418/731 (57%), Gaps = 44/731 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R++
Sbjct: 303 KKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 I  D     +E Q  AI+ L+L RLT      +  E  +L  +I     I+   
Sbjct: 406 -----KISYD----FTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG      V  L     +
Sbjct: 517 PRSFNASTVEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   L+   Q E I     F E    +  +    AT+ G ++   R +LS +   
Sbjct: 572 DIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627

Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   D  D I++V     E DI++ TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 RSKSTKYAKLKDQEDRIIAVAPVVLE-DIMIITKNGYGLRFNIEEVPV-VGAKAAGVKAI 685

Query: 728 SLAKGDQVISM 738
           +L  GDQV ++
Sbjct: 686 NLKDGDQVAAV 696


>gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
 gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
          Length = 819

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/739 (37%), Positives = 443/739 (59%), Gaps = 44/739 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T   SE Q  AI+ L+L RLT     ++++E  SL  +I     IL 
Sbjct: 412 -------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K EL  +K +  TPRRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A    GK    + M++ D    +  +++  S+L F+S G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS--NGK---ELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++  P   +       +F TK+G  +++ ++++ + 
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIDIP---AFTEEHRFLFVTKNGMTKQSLITNY-KP 628

Query: 669 NRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R  K  +A+KL   DE+L+V       DI L TK G  +R+PI+ I   +G  + GV+ 
Sbjct: 629 QRYSKSMMAIKLKDDDELLNVHLIDGTEDIFLATKNGYGLRYPITEIPE-SGARTAGVKA 687

Query: 727 ISLAKGDQVISMAIVLHAD 745
           I+L + D+V+   IVL ++
Sbjct: 688 INLKQDDKVVG-GIVLSSN 705


>gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
 gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
          Length = 821

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/734 (38%), Positives = 429/734 (58%), Gaps = 43/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R  + 
Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKTE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IELK
Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RRT+Y
Sbjct: 306 RGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L+ + +N            
Sbjct: 366 NLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLV-KEYN------------ 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +  Q  AI+ L+L RLT     ++  E   L   I E   IL++ +
Sbjct: 413 -------------FTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNEN 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +E+ ++K E   PRRT+I   +  L+++ +  +  ED+VV VSH GY+KR  +
Sbjct: 460 ELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSI 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++A      G     +R++D+   +   +T + +  F++LG +    +  +     + 
Sbjct: 520 RSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKD 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--- 670
            G+ +   + L   E I   M F + +       ++  T  G V++   +D+   +R   
Sbjct: 575 TGEHISQTIGLADNEEIIKAMIFDKLDQPGT---IIMGTSDGQVKQTAFNDYKPGSRYKS 631

Query: 671 SGKIAMKLDSRDEILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +A+KL    ++++V+    T EN  LLT ++ G  VR+ ++ + V  G  + GVR I
Sbjct: 632 HASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPV-TGIRTAGVRAI 690

Query: 728 SLAKGDQVISMAIV 741
           +L   DQV    +V
Sbjct: 691 NLKDDDQVADQILV 704



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT+S +G+  R    D  ++     G+RA ++   +++   +    V D   I +++ +
Sbjct: 660 LLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQIL---VKDGQDIAVITQR 716

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887
           G    +PV+EI + +RA +G ++    K
Sbjct: 717 GAFKEMPVDEIEVGARARRGELVLRRLK 744


>gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 812

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/740 (37%), Positives = 431/740 (58%), Gaps = 47/740 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S+++ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A
Sbjct: 4   IESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL RM+QDW +R  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +  +PD  LD LM+ ++GPDFPTGA++ G  GIK AY TG G I++R  + 
Sbjct: 184 GEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGHGKIIVRSKTS 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++ QIV+TEIPY+VNKA ++++I E+   K+I  I+++RD+SDR G  +V+ELK
Sbjct: 244 IEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL A++ F++EV+ +RTKY
Sbjct: 304 RDVDSKGILNYLFKNTDLQVSYNFNMVAISHMRPERLSLKKILVAYLEFQQEVIEKRTKY 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DR H++ GL  A++ LD+V++ IR S N + AR  L++                
Sbjct: 364 NLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVK---------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE Q  AI+ L+L RLT     ++ NE   L  EI +   IL+S  
Sbjct: 408 ----------TYDFSEKQADAIVALQLYRLTNTDVTELENEHQHLADEITKDNKILNSPK 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVR-EDMVVTVSHLGYVKRVPL 553
            L  ++  EL ++     + RRT I   + D++ + D ++  ED++V VSH GY+KR  +
Sbjct: 458 ELNRVLANELRALAKTYRSARRTEIQAEVSDIKINTDVLIPDEDVIVMVSHDGYIKRSSI 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A        +   ++DED+   +  ++    +  F++ G +    V+ L     + 
Sbjct: 518 RSYKA------STTDTGLKDEDYPIFMAELNARDHLFMFTNKGNLIYRPVFELADVKWKD 571

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +   + L+  E I     F  D       +++ AT  G+V++   +D ++  R+ K
Sbjct: 572 TGEHISQTIGLDADEEIIGTYAF--DSLKQPGTFLI-ATDQGHVKQTGFAD-MKPGRTYK 627

Query: 674 ----IAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                  KL + DE    I  ++T      +LL +  G  +R+ I  + V   R + GV+
Sbjct: 628 SHAYTYEKLKTADERVVAIHYLKTPATAGQMLLISNNGLALRYGIDEVPVNGAR-TTGVK 686

Query: 726 GISLAKGDQVISMAIVLHAD 745
            + L   D+V ++ +V   D
Sbjct: 687 SMGLRGVDKVTNLQLVSEDD 706


>gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
 gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
          Length = 821

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 280/734 (38%), Positives = 429/734 (58%), Gaps = 43/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R  + 
Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKTE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IELK
Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RRT+Y
Sbjct: 306 RGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQY 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L+ + +N            
Sbjct: 366 NLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLV-KEYN------------ 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +  Q  AI+ L+L RLT     ++  E   L   I E   IL++ +
Sbjct: 413 -------------FTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNEN 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +E+ ++K E   PRRT+I   +  L+++ +  +  ED+VV VSH GY+KR  +
Sbjct: 460 ELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSI 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++A      G     +R++D+   +   +T + +  F++LG +    +  +     + 
Sbjct: 520 RSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKD 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--- 670
            G+ +   + L   E I   M F + +       ++  T  G V++   +D+   +R   
Sbjct: 575 TGEHISQTIGLADNEEIIKAMIFDKLDQPGT---IIMGTSDGQVKQTAFNDYKPGSRYKS 631

Query: 671 SGKIAMKLDSRDEILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +A+KL    ++++V+    T EN  LLT ++ G  VR+ ++ + V  G  + GVR I
Sbjct: 632 HASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPV-TGIRTAGVRAI 690

Query: 728 SLAKGDQVISMAIV 741
           +L   DQV    +V
Sbjct: 691 NLKDDDQVADQILV 704



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +LT+S +G+  R    D  ++     G+RA ++   +++   +    V D   I +++ +
Sbjct: 660 LLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQIL---VKDGQNIAVITQR 716

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887
           G    +PV+EI + +RA +G ++    K
Sbjct: 717 GAFKAMPVDEIEVGARARRGELVLRRLK 744


>gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
 gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
          Length = 806

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 297/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSEYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVAGLMKALSILDEVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      +  E   L  +I E   IL S  +LL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLL 462

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T   VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E +   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+GI+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSP-VGVRAAGVKGINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+++ D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GRPLNSEKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      FR  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEV 797



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKGINLKEDDYVASGRPLNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1259

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 296/788 (37%), Positives = 436/788 (55%), Gaps = 97/788 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     +DN + D    L A+ E ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHGLIVGSQGIHDAYTTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DR 305
            SI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ R+  IA++ D+S DR
Sbjct: 671  SIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +VA +
Sbjct: 731  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR----------- 839

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 840  --AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GI++ EL  + D+    RRTRIV    D+ DED I RED+VVT++  
Sbjct: 885  DLEDILAKPERQRGIVRDELTEIVDKHGDDRRTRIVAADGDVNDEDLIAREDVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT++G V++ KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDA---PYLVLATRNGLVKKTKLTDF 1061

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C+ E D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPM-GRATS 1119

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D                    Y+  ++  R                   E
Sbjct: 1120 GVQGMRFNTDD--------------------YLLSLNVVR-------------------E 1140

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            G               ++L  +  G+ KRT+  ++ +  R GKG+      +    G LV
Sbjct: 1141 GT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDR--RRGKLV 1184

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900
                V+D+ ++  ++  G +IR    ++R A R TKGV + +  +D  ++++ R  E   
Sbjct: 1185 GALIVDDDSELYAITSGGGVIRTDARQVRKAGRQTKGVRLMNLGEDNTLLAIARNAEENA 1244

Query: 901  -EIVDEAE 907
             E+V+EAE
Sbjct: 1245 DEVVEEAE 1252



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 89/130 (68%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 807

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 299/836 (35%), Positives = 467/836 (55%), Gaps = 52/836 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKPFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ II+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNCTVDDLLAIIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+VIELK+ A
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVIELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQITYNFNMVAINNRRPTLMTLPNILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+  L+ +                  
Sbjct: 369 KAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAK------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      + NE   L  +I     IL+S  +LL
Sbjct: 411 --------FSFTEAQAEAIVSLQLYRLTNTDITALENEAEELNQKITTLQAILNSEKKLL 462

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR+        + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKADLKRVKKTYSDERRSVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E +   T++P  E+E      +VVF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETLIWATVVPNFEEEKR----FVVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L K D
Sbjct: 634 VAINLKKDDEVVDIFATDGTSDIVLATHGAYALIFDEEEVSP-VGVRAAGVKAINL-KED 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
             ++    L+++ D   +   +    A +RL + + E+ T  K    +   +     +  
Sbjct: 692 DYVAAGKPLNSEKD---QFMLVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             E+   ++ +   +EK   +      FR  +R   G    DV   NE G +V  +
Sbjct: 749 GIEVIRDDELVYMKTEKQIVEEIDPKTFRNKDRYSNGSLVLDV---NETGEVVETW 801



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + A  P+N + DQ +LV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVAAGKPLNSEKDQFMLVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E IR+ E+V
Sbjct: 737 FKELKRNPYRIVGIEVIRDDELV 759



 Score = 37.7 bits (86), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  I+TV+++G+ KRT       SN    G++  DV        L+  F  N  + ++L
Sbjct: 501 QEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDV--------LLERFDTNTTETVLL 552

Query: 856 VSDKGTLIRVPVNEI 870
            ++KG  I +PV E+
Sbjct: 553 FTNKGNYIYLPVYEM 567


>gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 817

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 277/727 (38%), Positives = 419/727 (57%), Gaps = 44/727 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTD 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+++
Sbjct: 304 KDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E  +L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F++LG      +  L     + 
Sbjct: 518 RSFNASTLEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKD 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI- 668
            G+ L   L+   Q E I     F E    +  +    AT+ G ++   R +LS +    
Sbjct: 573 IGEHLSQTLTNFEQEEEIL----FAEVVDQFEGVTYFAATQQGQIKRFERKELSPWRTYR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A   D  D I++V     E DI++ TK G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSTKYAKIKDQEDRIVAVAPVVFE-DIMIITKNGYGLRFNIEEVPV-VGAKAAGVKAIN 686

Query: 729 LAKGDQV 735
           L  GDQV
Sbjct: 687 LKDGDQV 693


>gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
 gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
          Length = 817

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/728 (38%), Positives = 419/728 (57%), Gaps = 44/728 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R++
Sbjct: 303 KKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E  SL  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG      +  L     +
Sbjct: 517 PRSFNASTLEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   L+   Q E I     F E    +  +    AT+ G ++   R +LS +   
Sbjct: 572 DIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627

Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   D  D I++V     E DI++ TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 RSKSTKYAKLKDQDDCIVAVAPVVLE-DIMIITKNGYGLRFNIEEVPV-VGAKAAGVKAI 685

Query: 728 SLAKGDQV 735
           +L  GDQV
Sbjct: 686 NLKDGDQV 693


>gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161]
 gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 819

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703


>gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
 gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
          Length = 815

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 285/761 (37%), Positives = 428/761 (56%), Gaps = 48/761 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  +++ + M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K +
Sbjct: 3   EGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+AL RM+QDW +R  L+E  GN GS+DGDP AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  + ++ +P   L+ LM  ++GPDFPTG +I G+ GI  AY TGRG IV+R
Sbjct: 183 PHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G++ QI VTEIPY+VNKA +++KI E+   K++  +A++RDE+DR G R+ 
Sbjct: 243 SKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A A  +LN L++ T LQ  ++ NMVA+N  +PE   L  IL A++  +  V+ +
Sbjct: 303 IELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DR H++VGL  A++ LD+V++ IR S +   AR  L++    A D     
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----AYD----- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT      +  E   L  EI++   IL
Sbjct: 414 -----------------FSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVK 549
           +    L  +++QEL +V  +   PRRT I   + D++ +  +    ED+VV VSH GY+K
Sbjct: 457 AEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  Y A      G     ++D D+   +  +ST   ++ F+S G +    V  +   
Sbjct: 517 RSGVRSYTASDPTDNG-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDV 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666
             +  G+ +   + L   E I     F   +     L    AT  G +++   +D     
Sbjct: 572 KWKETGEHISQTIGLAADEEIVATFAFKTLKEPGRFL---IATSDGYIKQTAFADLTPGR 628

Query: 667 QINRSGKIAMKLDSRD-EILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                  +  KL + +  +++V+  T+  E  ILL +K G  +R+P+  + V   R + G
Sbjct: 629 TYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGAR-TTG 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           VR + L   D+V+++A+V       +E I  +    A +RL
Sbjct: 688 VRSMDLRDDDEVVNLALVTD-----NETIALITQRGAFKRL 723



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           EQ IL +S+ G+  R    +  ++     G+R+ D+   +E+   V +  V DN+ I L+
Sbjct: 658 EQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEV---VNLALVTDNETIALI 714

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           + +G   R+ + E+ + SRA +GV++    K
Sbjct: 715 TQRGAFKRLAMKELSVTSRARRGVIVLRELK 745


>gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e]
 gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561]
 gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S]
 gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
 gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e]
 gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes]
 gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
          Length = 819

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703



 Score = 37.7 bits (86), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 10/248 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK G V+R     +   N   ++AMK    D  + ++     + +LL T  G
Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTSKG 559

Query: 704 QCVRFPISAIRVFAGRN---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH-MS 759
             +  P+  +     +N    V      L+ G+++ S AI + A  +    +   K+ M+
Sbjct: 560 NFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS-AIAIQAFTEEKRFLFVTKNGMT 618

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            Q  + +   +  +       ++G+  E     L    + I   ++ G+G R S  +   
Sbjct: 619 KQSAITNYKPQRYSKSMMAIKLKGD-DELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE 677

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           S     G++A ++ + + +   + + P N+   I+L + +G+L ++  +E    SRA +G
Sbjct: 678 SGARTAGVKAINLKQDDIVIGGIVLMP-NEQKHILLATQRGSLKQMKASEFEPISRAKRG 736

Query: 880 VVIFSTAK 887
           +++    K
Sbjct: 737 LLMLRELK 744


>gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 819

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/745 (37%), Positives = 443/745 (59%), Gaps = 49/745 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G IV+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E   L  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELADQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             S L+ ++K EL  +K +  TPRRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DESELIAVLKSELADIKKKYKTPRRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A        + + M++ D    +  +++  ++L F+S G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
             +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ ++++
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAIQTFTEEKR------FLFVTKNGMTKQSAITNY 626

Query: 666 IQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +  R  K  +A+KL   DE+LSV       DI L T+ G  +R+PI+ I   +G  + G
Sbjct: 627 -KPQRYSKSMMAIKLKDNDELLSVNLIDGTEDIFLATRNGYGLRYPIAEIPE-SGARTAG 684

Query: 724 VRGISLAKGDQVISMAIVLHADADY 748
           V+ I+L + D VI   I+   D  +
Sbjct: 685 VKAINLKQDDIVIGGVILAPNDTKH 709


>gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175]
 gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
 gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
          Length = 819

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703


>gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071]
 gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071]
          Length = 819

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703



 Score = 37.7 bits (86), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 10/248 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK G V+R     +   N   ++AMK    D  + ++     + +LL T  G
Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTSKG 559

Query: 704 QCVRFPISAIRVFAGRN---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH-MS 759
             +  P+  +     +N    V      L+ G+++ S AI + A  +    +   K+ M+
Sbjct: 560 NFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS-AIAIQAFTEEKRFLFVTKNGMT 618

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            Q  + +   +  +       ++G+  E     L    + I   ++ G+G R S  +   
Sbjct: 619 KQSAITNYKPQRYSKSMMAIKLKGD-DELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE 677

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           S     G++A ++ + + +   + + P N+   I+L + +G+L ++  +E    SRA +G
Sbjct: 678 SGARTAGVKAINLKQDDIVIGGIVLMP-NEQKHILLATQRGSLKQMKASEFEPISRAKRG 736

Query: 880 VVIFSTAK 887
           +++    K
Sbjct: 737 LLMLRELK 744


>gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 793

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 300/893 (33%), Positives = 473/893 (52%), Gaps = 122/893 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K A
Sbjct: 4   IKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE +GK+HPHG+A++YDAL RMAQD+++R  LIEGQGNFGS+DGDPPAA RYTE RL
Sbjct: 64  RVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP HN 
Sbjct: 124 TKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPHNF 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
            EV +    + + PD  ++ L   I+GPDFPTG VI   +  + + Y + RGSI I+G +
Sbjct: 184 TEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKGKA 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G+R++IV+ EIPYQVNK  +++KIAELVR  +   I+DLRDESDR G R+VIEL
Sbjct: 244 RIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+ +L +LY+ T L+  F VN+  L   +P    L  +L+ F+  R E++ RRT 
Sbjct: 304 KRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRRTL 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +R H++ GL  A+ N D+V+ I+R S +   AR +L+   +N           
Sbjct: 364 FELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQAR-QLLTSQFN----------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q  AIL++RL+R T L    +++E   L  +I+    ILSS 
Sbjct: 412 --------------LSETQANAILDMRLSRFTSLETQKLKDESIELKQKIERYKQILSSD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +  + +  +E   +  +    R+T I        +++   +E  +  + + G +      
Sbjct: 458 NEKIKVFIEETDELVRKYGDQRKTTIAT------EKELTFKEHFMFAILNTGRIVN---- 507

Query: 555 VYRAQRRGGKG--------RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            Y+ +    K            + + + + +  +  V     + FF+  G  Y    W L
Sbjct: 508 -YKVEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAY----WSL 562

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            I  P+   K  +NI    +GE + T     + E   N ++++  TK G ++R    D I
Sbjct: 563 VIDLPKGEDK--LNI----EGEIVGTAY---QGEGEENRVFLI--TKKGIIKRMSDED-I 610

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                G   M L+  DE++        + I + TK    + F  + +R+  G  + GV  
Sbjct: 611 FYKSQGHTVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRI-TGDKAKGVEA 669

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D+ ++ A  L+                                           
Sbjct: 670 IDLDENDE-VAGAFFLNG------------------------------------------ 686

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      +++L  +  G+ K     +F I  R+ KG+ A    K+N+   +V++ P
Sbjct: 687 ----------HEYLLISTSFGYMKLVEKTEFPIKKRAQKGLLAV---KLNKDDYVVSILP 733

Query: 847 VNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897
           VN +D++++ +  G L+++ +++  I +  R + G  +F    D R+V+V ++
Sbjct: 734 VNKSDEVLINTKHGKLLKLKIDKETIPVEKRTSLGKNLFKFEAD-RIVNVLKL 785


>gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K]
          Length = 821

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 279/739 (37%), Positives = 420/739 (56%), Gaps = 44/739 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K 
Sbjct: 3   DEAQKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+A+ R++QDW LR  LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV DG V +ID+PD  L+ +M  ++GPDFPTG ++ G  GIK AY TGRG +V+
Sbjct: 183 PPHNLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGILQGLDGIKKAYETGRGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I++  G+REQIV++EIPY+VNKA M++KI EL   K++  I+++RDESDR G  V
Sbjct: 243 RAKTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGLSV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A +  ILN L++ T LQ  ++ NMVA++  +P++  L+ IL A++  +EEVV 
Sbjct: 303 VIELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQVGLLEILHAYLKHQEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DR H++ GL  A++ LD+V+  IR S N + A+  L+            
Sbjct: 363 RRTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                 + Y          +E Q  AI+ L+L RLT      +  E   L   +     I
Sbjct: 411 ------AQYD--------FTEAQAEAIVSLQLYRLTNTDVTALEAEAAELKTAVAGYQAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +IK EL SV       R+T I   +  L+++    ++ E ++V VSH GY+
Sbjct: 457 LGNPKELARVIKAELKSVVKAYRNDRKTEIEAEIETLEIDTSVTVIDETVMVAVSHDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A      G     +++ DF      + T   ++ F++ G + +  V  +  
Sbjct: 517 KRSSLRSYQASEGADGG-----LKEGDFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIAD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-- 666
              +  G+ +   + L   E I     F  +E S    Y V  T  G +++    D +  
Sbjct: 572 LKWKEMGEHISQSIGLAADEAIIAAFSFTPNEQSG---YFVIGTTDGYIKQTAFQDLLPS 628

Query: 667 QINRS-GKIAMKLDSRDEILSV----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +  RS  +  +KL +   + +V    ET  Q+  I   +  G  + F ++ + V +G  +
Sbjct: 629 RTYRSKAQDFIKLHAGANVTNVYWVSETDAQQQAIFSASYNGYGLSFALNEVSV-SGAKA 687

Query: 722 VGVRGISLAKGDQVISMAI 740
            GV+ + L  GD V +  +
Sbjct: 688 GGVKLMDLKDGDHVANFTL 706



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E   ++Q I + S  G+G   +  +  +S     G++  D+   + +       P   
Sbjct: 653 VSETDAQQQAIFSASYNGYGLSFALNEVSVSGAKAGGVKLMDLKDGDHVANFTLFDPAEK 712

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERI 897
           +  + +++ +G   R+ ++E+ + SRA +GV+I    K    RV ++ R+
Sbjct: 713 HAAVAIITQRGAFKRMFLSEVGLTSRARRGVLILRELKRDPHRVAAMVRV 762


>gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis]
          Length = 815

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/738 (37%), Positives = 420/738 (56%), Gaps = 43/738 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  +++ + M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K +
Sbjct: 3   EGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+AL RM+QDW +R  L+E  GN GS+DGDP AA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  + ++ +P   L+ LM  ++GPDFPTG +I G+ GI  AY TGRG IV+R
Sbjct: 183 PHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G++ QI VTEIPY+VNKA +++KI E+   K++  +A++RDE+DR G R+ 
Sbjct: 243 SKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A A  +LN L++ T LQ  ++ NMVA+N  +PE   L  IL A++  +  V+ +
Sbjct: 303 IELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DR H++VGL  A++ LD+V++ IR S +   AR  L++    A D     
Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----AYD----- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT      +  E   L  EI++   IL
Sbjct: 414 -----------------FSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVK 549
           +    L  +++QEL +V  +   PRRT I   + D++ +  +    ED+VV VSH GY+K
Sbjct: 457 AEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  Y A      G     ++D D+   +  +ST   ++ F+S G +    V  +   
Sbjct: 517 RSGVRSYTASDPTDNG-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDV 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666
             +  G+ +   + L   E I     F   +     L    AT  G +++   +D     
Sbjct: 572 KWKETGEHISQTIGLAADEEIVATFAFKTLKEPGRFL---IATSDGYIKQTAFADLTPGR 628

Query: 667 QINRSGKIAMKLDSRD-EILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                  +  KL + +  +++V+  T+  E  ILL +K G  +R+P+  + V   R + G
Sbjct: 629 TYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGAR-TTG 687

Query: 724 VRGISLAKGDQVISMAIV 741
           VR + L   D+V+++A+V
Sbjct: 688 VRSMDLRDDDEVVNLALV 705



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           EQ IL +S+ G+  R    +  ++     G+R+ D+   +E+   V +  V DN  I L+
Sbjct: 658 EQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEV---VNLALVTDNKTIALI 714

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           + +G   R+ + E+ + SRA +GV++    K
Sbjct: 715 TQRGAFKRLAMKELSVTSRARRGVIVLRELK 745


>gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
 gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
          Length = 835

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 276/728 (37%), Positives = 418/728 (57%), Gaps = 44/728 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K 
Sbjct: 21  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 80

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 81  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 140

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 141 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 200

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 201 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 260

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 261 EIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 320

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R++
Sbjct: 321 KKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSR 380

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 381 FDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADA-KENLKVSYD----------- 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E  SL  +I     I+   
Sbjct: 429 --------------FTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDE 474

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 475 RTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTS 534

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++ G      +  L     +
Sbjct: 535 PRSFNASTVEEVGK-----RDDDELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKWK 589

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   L+   Q E I     F E    +  +    AT+ G ++   R +LS +   
Sbjct: 590 DIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 645

Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   D  D I++V     E DI++ TK G  +RF +  + V  G  + GV+ I
Sbjct: 646 RSKSTKYAKLKDQDDRIVAVAPVVLE-DIMIITKNGYGLRFNVEEVPV-VGAKAAGVKAI 703

Query: 728 SLAKGDQV 735
           +L  GDQV
Sbjct: 704 NLKDGDQV 711


>gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
 gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
          Length = 817

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 295/749 (39%), Positives = 425/749 (56%), Gaps = 62/749 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+  +
Sbjct: 12  DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPD 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA
Sbjct: 72  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+ +A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 132 MRYTECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G +GI++AYA+GRG+
Sbjct: 192 TNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDAYASGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
             IR    I+  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++D +DR+ 
Sbjct: 252 FKIRATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDREH 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A+  L++R      
Sbjct: 372 DVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIER------ 425

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQT+ IL+  L RLT   R ++ +E   L  EI E
Sbjct: 426 --------------------FALSDVQTQYILDTPLRRLTKFDRIELESEKERLNAEIAE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-------LLDMEDEDCIVREDMV 539
              IL S + L  ++  EL +V  +  T RRT ++E         L + D+ C       
Sbjct: 466 LTRILDSDAELRKLVSAELAAVSKKFGTDRRTVLLESSGAPAAVPLQVADDPC------R 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R   +   A    GKGR        D +      +    V   +S G + 
Sbjct: 520 VLLSSTGLLARTADANPFAD--DGKGRR----VKHDLIVSAVPATARGEVGVVTSAGRLL 573

Query: 600 KEKVWRLP-----IGSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP      G+P   G A L   +SL+  E +  +     DESS     +   T+
Sbjct: 574 RVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDADETVVCLTTL--DESSPG---LALGTE 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R  + D+   N+     + L   D I+ + E  T E D++  T   Q +R+  S 
Sbjct: 629 QGVVKR-VVPDYPS-NKEELEVITLKEGDRIVGAAELRTGEEDLVFITDDAQLLRYQASQ 686

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + GV GI L +G +VIS   V
Sbjct: 687 VRP-QGRPAGGVAGIKLTQGAKVISFTAV 714


>gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
 gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
          Length = 817

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/735 (36%), Positives = 430/735 (58%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 7   IQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKGFRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G YHPHG++++Y+A+ R++QDW  R +LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 67  KTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  L+ D+ K+TVDF  N+D + +EP V  A YPN+LVNG  GI+ G AT+IP+HNL
Sbjct: 127 SKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPSHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V +ID+PD  +  LM+ ++GPDFPTGA++ G  GIK AY TG+G I++R  + 
Sbjct: 187 GEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAILQGVDGIKKAYETGKGKIIVRSKTR 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G +EQIV+ EIPY+VNKA ++ K+ E+   KR+  IA++RDESDR G ++V+ELK
Sbjct: 247 IEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQIVVELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A  ILN L + T LQ  ++ NMVA++  +P++  ++ +L+A++  ++EV+ RRT Y
Sbjct: 307 KEANAGGILNYLLKNTDLQVAYNFNMVAIDKKRPKQVGIVRMLQAYLDHKQEVITRRTNY 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  R H++ GL  A++ LD+V+  IR S + + A+  L++R               
Sbjct: 367 NLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIER--------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E+Q  AI+ L+L RLT      + NE ++L  +I     IL S  
Sbjct: 412 -----------FDFTEIQAEAIVSLQLYRLTNTDITALENEADALNKDIMAYNKILGSSQ 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++K+EL+ VK +  +PR T I + +  L ++ E  I  E+++V+V+  GY+KR  L
Sbjct: 461 ELNKVMKKELIEVKKKYASPRLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYIKRTSL 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A +    G     +++ D+   +  ++T   +L F+S G +    +  +     + 
Sbjct: 521 RSYSASKPTEIG-----IKEGDYPIYIQQLNTLNHLLIFTSKGNIIYRPIHEISDLRWKD 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  L   ++    E +  +      E         F TK G +++  +S+++ I R+ K
Sbjct: 576 MGDHLSQNIAFETDETVVKVFGL---EKQLPPATFTFITKEGYIKQTAVSEYV-IGRNYK 631

Query: 674 ----IAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                A+KL  + DE+L++    +    D+ L T  G  +R+P+  +    G  + GV+ 
Sbjct: 632 NKSFSAIKLKTTTDELLNIVYTEKPLSKDVFLVTNRGFGLRYPLDEVPT-VGAKAAGVKS 690

Query: 727 ISLAKGDQVISMAIV 741
           I+L  GD V++  +V
Sbjct: 691 INLKDGDYVVNGVLV 705


>gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
 gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
          Length = 825

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 310/899 (34%), Positives = 489/899 (54%), Gaps = 113/899 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +     +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  LF+ S  T+  +L F++LG V    ++R P+  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--LFVQSVKTTQHLLIFTTLGNV----IYR-PVHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEVIYVEVVDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V 
Sbjct: 618 ERKEFSPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVLLISRNGYALRFNIEEVPVI 676

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D VI  A + +  + Y      + H  + +R+     EEI    
Sbjct: 677 -GAKAAGVKAMNL-KADDVIQAAFICNTSSFY-----LLTHRGSLKRV---SIEEIP--- 723

Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             ++   N   +  +ELK K   +     VSE+GF                         
Sbjct: 724 --ATSRANRGLQVLRELKSKPHRVFLAGAVSEQGF------------------------- 756

Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +G L +   V D +Q +++ S+ GT     + ++ ++ R + G  I  T  DE V
Sbjct: 757 ----VGDLFST-EVEDGEQTLVIQSNNGTTYEAILQDLNLSERTSNGSFISDTISDEEV 810


>gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
 gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
          Length = 812

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/735 (37%), Positives = 429/735 (58%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A
Sbjct: 4   IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  + 
Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSKTK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++ QIVV+EIPY+VNKA ++++I EL   KR+  I+++RD+SDR+G  +VIELK
Sbjct: 244 IESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F+ EV+ +RT++
Sbjct: 304 RDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRTQF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++                
Sbjct: 364 DLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK---------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+   
Sbjct: 408 ----------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPK 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +EL ++      PRRT I + +  + +  +  I  ED+VV VSH GY+KR  +
Sbjct: 458 ELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSI 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A        +G  ++DED+   +  ++    +  F+S G +    ++ +     + 
Sbjct: 518 RSYKA----SGNENG--LKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKD 571

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINR 670
            G+ +   + L+  E I     F   +     L+++ AT  G+++R KL+D        +
Sbjct: 572 TGEHISQTIGLDNDEEIIGTFAFSSLKEK--GLFLI-ATDDGHIKRTKLTDLAPGRTYKK 628

Query: 671 SGKIAMKL-DSRDEILSVETCTQ---ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +  KL D +  I++++          +LL +KLG  +R+ I  + +   R + GV+ 
Sbjct: 629 HAYMYEKLKDPKSRIVAIDYLADLDASGKLLLISKLGLALRYGIDEVPINGAR-TTGVKS 687

Query: 727 ISLAKGDQVISMAIV 741
            +LA GD + ++ +V
Sbjct: 688 QNLADGDVITNLQLV 702


>gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 818

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 292/750 (38%), Positives = 423/750 (56%), Gaps = 63/750 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+   
Sbjct: 12  DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMSEMGLRPE 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA
Sbjct: 72  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+ +A   + D + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 132 MRYTECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+     +I +P+ DLDALM+ + GPD PTG  I+G +GI++AY TGRG+
Sbjct: 192 TNMPPHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIVGLSGIRDAYETGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             +R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++D +DR  
Sbjct: 252 FKMRATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDRAH 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM++      
Sbjct: 372 TVVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLMEQ------ 425

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQT+ IL+  L RLT   R ++  E + L  EI+E
Sbjct: 426 --------------------FSLSDVQTQYILDTPLRRLTKYDRIELETEKDRLNAEIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L + D+ C      
Sbjct: 466 LTRILESDAELRKLVSSELATVAKKFGTDRRTDLLESGGAPVATVPLQVADDPC------ 519

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G + R       A+  G K          D +      +    +   +S G +
Sbjct: 520 RVLLSSTGLLARTANGEPFAENAGAK------RVKHDVIVSAVPATARGEIGAVTSAGRL 573

Query: 599 YKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +  V  LP     + +P  A G  L   LSL   E +  +     DESS     +   T
Sbjct: 574 LRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVCLTTL--DESSPG---LAIGT 628

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
           + G V+R  + D+       ++ + L   D I+ +VE  T + D++  T   Q +R+  S
Sbjct: 629 EQGVVKR-VVPDYPSHKEELEV-ITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYQAS 686

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R   GR + GV GI LA+G +VIS   V
Sbjct: 687 VVRP-QGRPAGGVAGIKLAEGVKVISFTAV 715


>gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames]
 gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne]
 gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L]
 gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055]
 gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B]
 gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum]
 gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia
           94]
 gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI]
 gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames]
 gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne]
 gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L]
 gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 807

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+AD D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNADKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
          Length = 812

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 272/735 (37%), Positives = 430/735 (58%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A
Sbjct: 4   IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  + 
Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSKTK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++ QIVV+EIPY+VNKA ++++I EL   K++  I+++RD+SDR+G  +VIELK
Sbjct: 244 IESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F+ EV+ +RT++
Sbjct: 304 RDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRTQF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++                
Sbjct: 364 DLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK---------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+   
Sbjct: 408 ----------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPK 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +EL ++      PRRT I + +  + +  +  I  ED+VV VSH GY+KR  +
Sbjct: 458 ELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSI 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A        +G  ++DED+   +  ++    +  F+S G +    ++ +     + 
Sbjct: 518 RSYKA----SGNENG--LKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKD 571

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINR 670
            G+ +   + L+  E I     F   +     L+++ AT  G+++R KL+D        +
Sbjct: 572 TGEHISQTIGLDNDEEIIGTFAFSSLKEK--GLFLI-ATDDGHIKRTKLTDLAPGRTYKK 628

Query: 671 SGKIAMKL-DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +  KL D +  I++++     +    +LL +KLG  +R+ I  + +   R + GV+ 
Sbjct: 629 HAYMYEKLKDPKSRIVAIDYLADPDASGKLLLISKLGLALRYGIDEVPINGAR-TTGVKS 687

Query: 727 ISLAKGDQVISMAIV 741
            +LA GD + ++ +V
Sbjct: 688 QNLADGDVITNLQLV 702


>gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes str. 4b
           F2365]
 gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 819

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+L+V       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703


>gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
 gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
          Length = 847

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 287/741 (38%), Positives = 427/741 (57%), Gaps = 44/741 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S  + M   +  YA  VIL RAIPD RDGLKPV RRIL+ M Q G   +K Y K A
Sbjct: 6   IINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG++AIY+ + RMAQ W +R +LI+G GNFGS+D DPPAA RYTE RL
Sbjct: 66  KTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A+ LL D+ KDTV F PNYD S Q+P VL +R+PN+LVNG  GIAVG AT+IPTHNL
Sbjct: 126 SALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  VA + NP+I LD LM+ ++GPDFPTG ++ G +GI+ A+ TGRG  +IRG +H
Sbjct: 186 GEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIRGKTH 245

Query: 256 IEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-----QGYR 309
           +E+  G + ++IVV+EIPY+V K+ ++ +I ELV E++I     +RDE+ R     +  R
Sbjct: 246 VEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQKKVR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+++++ A    ILN LY+ T LQ  ++ NM  ++     +  L  +L A++  ++EVV
Sbjct: 306 IVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDHQKEVV 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R +Y L++ + R H++ GL  A + L ++V  I  S +   A++ +M++         
Sbjct: 366 TNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYG------- 418

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AIL ++LA LT L    +  EL +L  EI+E   
Sbjct: 419 -------------------FTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEELKS 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR---EDMVVTVSHLG 546
           IL+S  +L+ +I  EL  +K +    R T I +G ++    D  ++   ED +VT+++ G
Sbjct: 460 ILASEKKLIQVITGELNEIKKKYAEERLTEI-QGEIEEIKIDIAMQINAEDCIVTLTNEG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR     +++   GG   +  V ++ D V      +T  + LFF+  G  +   V   
Sbjct: 519 YIKRTSPRSFKS--VGGTLETCGV-KEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAF 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    +  G AL+NI+ L + +R   I+ F   E+    LYV   +K+G +++  LS++ 
Sbjct: 576 PDDKWKDIGSALVNIIPLEKNQR---IVGFTIVENFKQPLYVYHVSKNGLMKKTALSEYE 632

Query: 667 QINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               S  +A KL    DE ++V    +   IL  TK G  +RF  S +    GR S GV+
Sbjct: 633 TNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSA-TGRASSGVK 691

Query: 726 GISLAKGDQVISMAIVLHADA 746
            I+LA GD VI+M  +   D+
Sbjct: 692 AIALAPGDDVITMLPIEEVDS 712


>gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland
           1988]
          Length = 819

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 440/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E +        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEGKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703


>gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220]
          Length = 819

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 280/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L               
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410

Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608
           R     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP 
Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571

Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ +++
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +  R  K  +A+KL   DE+L+V       DI L TK G  +R+ I+ I   +G  + 
Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683

Query: 723 GVRGISLAKGDQVISMAIVL 742
           GV+ I+L + D VI   +++
Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703


>gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1]
 gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1]
          Length = 807

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+AD D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNADKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 807

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+AD D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNADKD---QLILVTQRGAIKRLKASEIEKSTRAK 731



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAIKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 812

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/735 (37%), Positives = 428/735 (58%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A
Sbjct: 4   IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  + 
Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSKTK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++ QIVV+EIPY+VNKA ++++I EL   K++  I+++RD+SDR+G  +VIELK
Sbjct: 244 IEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F++EV+ +RT++
Sbjct: 304 RDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQQEVIKKRTQF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++                
Sbjct: 364 DLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK---------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+   
Sbjct: 408 ----------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPK 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVR-EDMVVTVSHLGYVKRVPL 553
            L  ++ +EL ++      PRRT I + +  ++   D I+  ED+VV VSH GY+KR  +
Sbjct: 458 ELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSI 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A        +G  ++DED+   +  ++    +  F+S G +    ++ +     + 
Sbjct: 518 RSYKA----SGNENG--LKDEDYPIFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRWKD 571

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINR 670
            G+ +   + L+  E I     F    S       + AT  G+++R KL+D        +
Sbjct: 572 TGEHISQTIGLDNDEEIIGTFAF---SSLKEKGVFLIATDDGHIKRTKLTDLAPGRTYKK 628

Query: 671 SGKIAMKL-DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +  KL D    I++++     +    +LL +KLG  +R+ I  + +   R + GV+ 
Sbjct: 629 HAYMYEKLKDPESRIVAIDYLADPDASGKLLLISKLGLALRYGIDEVPINGAR-TTGVKS 687

Query: 727 ISLAKGDQVISMAIV 741
            +LA GD + ++ +V
Sbjct: 688 QNLADGDVITNLKLV 702


>gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
 gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
          Length = 819

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 298/880 (33%), Positives = 486/880 (55%), Gaps = 101/880 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINRKRPELMGIIPMLDAYIDHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTNYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E  SL  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAASLAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
             +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ ++++
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITNY 626

Query: 666 IQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +  R  K  +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + G
Sbjct: 627 -KPQRYSKSMMAIKLKDDDELLSVHLIDGSEDIFLATKNGYGLRYSITEIPE-SGARTAG 684

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + D V+   ++   +          KH                          
Sbjct: 685 VKAINLKQDDIVVGGVVITPNE---------QKH-------------------------- 709

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           IL  +++G  K+  + +F   +R+ +G+      K N     + 
Sbjct: 710 ----------------ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNP-HRFIG 752

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           +   ++ND + + ++   ++ + VN +RI  R + G  + 
Sbjct: 753 LTLADNNDHLFIETNTDQVVEIDVNNLRITDRYSNGSFVL 792



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 105/257 (40%), Gaps = 28/257 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK G V+R     +   N   ++AMK    D  + ++     + +LL T  G
Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTSKG 559

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +  P+  +     +N           GD V  +A  L A  +    I  ++  + ++R
Sbjct: 560 NFIYRPVHELPDIRWKNL----------GDHVSHLASDLSAGEEIRSAIA-IQAFTEEKR 608

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKE-------------QFILTVSEKGFGK 810
            +      +T     ++ +     +    +KLK+             + I   ++ G+G 
Sbjct: 609 FLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDDDELLSVHLIDGSEDIFLATKNGYGL 668

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R S  +   S     G++A ++ + + +   V + P N+   I+L + +G+L ++  +E 
Sbjct: 669 RYSITEIPESGARTAGVKAINLKQDDIVVGGVVITP-NEQKHILLATQRGSLKQMKASEF 727

Query: 871 RIASRATKGVVIFSTAK 887
              SRA +G+++    K
Sbjct: 728 EPISRAKRGLLMLRELK 744


>gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
 gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
          Length = 817

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 283/748 (37%), Positives = 436/748 (58%), Gaps = 53/748 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG YHPHG+++IY+A+ R++Q W LR  LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K TV+  PN+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E +   + ++D+P+ +LD LM+ I+GPDFPTG ++LG  GIK AY TGRG  ++
Sbjct: 183 PTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIMLGLDGIKKAYETGRGKAML 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++KI E+  +K+   IA++RDESDR+G R+
Sbjct: 243 RARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P+   L  IL++++  +  VV 
Sbjct: 303 VVELKKDANAQGILNYLFKNTDLQISYNFNMVAIDHKCPKHVGLKKILESYLEHQRIVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA++R H++ GL  A++ LD+V++ IR S N + A+  L+            
Sbjct: 363 KRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                 SS+          +E Q  AI+ L+L RLT      ++NE   L   I E   I
Sbjct: 411 ------SSFD--------FTEKQAEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +IK+EL ++  +  TPR T I   +  L ++ E  + +ED+++ VS  GYV
Sbjct: 457 LNNGKELDKVIKKELKTIDKKYGTPRLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  ++A      G     +++ED V  + + +T   +L F++ G V    +  +  
Sbjct: 517 KRSSLRSFKASDESDNG-----LKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIVD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +  G+ L   + L+  ER+     F   E E ++     VFATK G +++  L D +
Sbjct: 572 SRWKDTGEHLSQTVGLSDDERVIEAFTFDSLEKEGAF-----VFATKEGMIKQTLLKD-L 625

Query: 667 QINRSGK------IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFA 717
           +  R+ +      I +K D+ DE++  E    EN+   +  TT  G  +R+ ++ +    
Sbjct: 626 KPGRTYRSRAQTFIKLKTDT-DEVIMAEFVETENEDLQVFCTTHAGYGLRYLLNEVPTTG 684

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
            R S GV+ + L + D +IS+++V   D
Sbjct: 685 ARTS-GVKCMDL-RDDFLISVSLVSEHD 710



 Score = 38.1 bits (87), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  +L VS  G+ KR+S   F+ S+ S  G++  DV  + ++         N  D +++
Sbjct: 503 QEDVMLLVSRDGYVKRSSLRSFKASDESDNGLKEEDVVILMKVA--------NTLDHLLM 554

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVV 892
            ++KG +I  P+++I  +     G  +  T   + DERV+
Sbjct: 555 FTNKGNVIYRPIHDIVDSRWKDTGEHLSQTVGLSDDERVI 594


>gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
 gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
          Length = 870

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 295/780 (37%), Positives = 438/780 (56%), Gaps = 89/780 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH  +L ++ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APIAHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID+P ++   L EII GPDFPTG  I+   GI  AY T +G I IRGV+
Sbjct: 193 LGEIVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEIIDTEGIIEAYRTSKGIIPIRGVT 252

Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           H+E  S       +R  IVVTE+PYQVNK+A +EK+AELV + R+  IAD+RDESDR G 
Sbjct: 253 HLETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIRDESDRLGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR   +  IL+ LYR T+LQ+ F   ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRETDSQKILDNLYRQTALQTNFGTILLALVENKPCQLSLRQLLEEFLKFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+  + L +A+ R H+L GL IA+ NLD V+ I+R SP+  TA++   + ++N     
Sbjct: 373 LIRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSE-AFN----- 426

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q+ +IL + + RLTGL +  +  E   L   I +  
Sbjct: 427 --------------------LSEEQSDSILSMPMRRLTGLEQQKLDTEYQELEQRINQLQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI----------VEGLLDMEDED------C 532
            +L+ R+ L+  +K+EL S+K +   PRRTRI             +LD            
Sbjct: 467 TLLNDRNELMKSLKKELRSLKRKFANPRRTRIRSCLSTPSSSSPEILDSLPPGKKRVVLP 526

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V ++ + T +        P +     ++ G+  S  +   +    D  +  T+   +++
Sbjct: 527 TVTDEPIKTENAAKKASDSPKNATPKAQQSGQNSSFTLFTPQTPPADALLTITYQGYIYW 586

Query: 593 S-------SLGFVYKEK---VWRLPIGSPQA------RGKAL--------------INIL 622
                   S+  + +E+   ++R  I   +       +GKA                ++L
Sbjct: 587 QSSVQATDSIASLKQEEDFPIYRQAIAQKELLIVITNQGKAYPISVVDIPPKDSQACSLL 646

Query: 623 SL------NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           SL       + E++      PE++   N   ++  ++ G ++R  LS+  Q+   G   +
Sbjct: 647 SLLPNAAQKKAEKVVGYFFLPEEK---NTHELILLSQQGRIKRLPLSELNQLGNRGLALI 703

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQV 735
           K    DE+  V   + + +I + T  G+ +RF IS  +    GRN+ G + + L  G+ +
Sbjct: 704 KFKDADELSYVCLSSVDEEIAIATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGEHL 763


>gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478]
          Length = 1257

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 291/782 (37%), Positives = 438/782 (56%), Gaps = 99/782 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 550  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 609

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     +DN D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 610  PPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 669

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  IA++ D+ S+R
Sbjct: 670  SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIANIEDQGSER 729

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 730  VGVRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVEHQ 789

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 790  LDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR----------- 838

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 839  --AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 883

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GI++ EL  + D+    RRTRIV    D+ DED I RED+VVT++  
Sbjct: 884  DLEDILAKPERQRGIVRDELGEIVDKHGDDRRTRIVAADGDVSDEDLIAREDVVVTITET 943

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 944  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDWILFFTTQGRVYRAKAYE 1003

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V ATK+G V+++KL+DF
Sbjct: 1004 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDA---PYLVLATKNGLVKKSKLTDF 1060

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1061 -DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM-GRATS 1118

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+                   + D+R+  +                           
Sbjct: 1119 GVQGMRF-----------------NADDRLLSL--------------------------- 1134

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGA 840
             N+  E          ++L  +  G+ KRT+  ++ +  R GKG+     D  +   +GA
Sbjct: 1135 -NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 1185

Query: 841  LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE 899
            L+A    +D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R   E
Sbjct: 1186 LIA----DDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEE 1241

Query: 900  SE 901
            SE
Sbjct: 1242 SE 1243



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D   E+ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDNSAER-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 120 GNDPPAAMRY 129


>gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 832

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 282/740 (38%), Positives = 427/740 (57%), Gaps = 43/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    + S  + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K 
Sbjct: 9   EHHSSVISSPLEEIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKG 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R   I+ QGN GS+D DP AA RY
Sbjct: 69  YRKSAKTVGLVIGNYHPHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TV + PN+D +  EP VL ARYPN+LVNG  GIA G ATNI
Sbjct: 129 TEARLGKISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V  I + D  L+ LME I+GPDFPTG ++ G  GI+ A+ TG+G I++
Sbjct: 189 PPHNLSEVIDAAVYRIQHADCSLEELMEYIQGPDFPTGGIVQGLDGIREAFETGKGRIIV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE+     +QIV+TEIPY+V K+ M++KI ++   K+I  I D+RDESDR G RV
Sbjct: 249 RGKAVIEQKKT-VQQIVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++K+ A+ DVILN LY+ T LQ  ++ N+VA+   +P +  L  +L AF+  R EV+ 
Sbjct: 308 VVDMKKDANGDVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAQMLDAFIEHRREVIE 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y L K  DR H+L GL  AV+ LDE++ +IR S +   ++R +M            
Sbjct: 368 RRSRYDLKKKEDRCHILEGLIKAVSILDEIIALIRASKDKADSKRRIMD----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q  AI+ +RL RL+      +R E  +L  EI+E  DI
Sbjct: 417 ---------------AFAFSDAQAEAIVTMRLYRLSSTDITQLREEYATLLNEIEELHDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           L +   L  ++ +EL  VK    TPR TRI   + ++  +    I  E ++ T+S  GY 
Sbjct: 462 LENPRMLKKVMIRELHEVKKAFKTPRLTRIEHEIEEIVIDKVAMINSEQVMFTISRDGYF 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV +  Y A +    G     +++ D +     V+T   VLFF++ G      V+ +  
Sbjct: 522 KRVSMRSYNAGKEDMTG-----LKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYEVEE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G  + + + ++  E+IT         S   N Y++  TK+G V++  + ++ ++
Sbjct: 577 SRWKEIGSHINSTIRISGEEKITDAFVL---RSFATNAYMISVTKNGLVKKTAVREY-EV 632

Query: 669 NRSGKIA--MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +R+ K    MKL   DE+++       ++IL+ +K G   R+P+S I   + R S GV+ 
Sbjct: 633 SRNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVSRYPVSLIPETSPR-SKGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADA 746
           ++L   D+++S A + HADA
Sbjct: 692 MNLVM-DELVS-ACIHHADA 709


>gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
 gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
          Length = 823

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 309/897 (34%), Positives = 483/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   ++ LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I     ++   
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  VK +  TPR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 RTLYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTVSLIAEEETYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +    +  T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFAASTLEEIGK-----REDDRLIFTQVAKTTQHLLMFTTLGNV----IYR-PIHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFAATRLGQIKRVER 619

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL +K G  +RF I  + V  G
Sbjct: 620 KEFTPWRTYKSKSVKYAKLKDDSDQIVAVAPI-KLDDVLLISKNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K D  I +A + +  + Y      +    + +R+    TEEI      
Sbjct: 678 AKAAGVKAMNL-KADDEIQVAFICNTSSFY-----LLTQRGSLKRV---STEEIP----- 723

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +    TVSE+GF                           
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGTVSEQGF--------------------------- 756

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             IG L +   V D DQ ++V S+KG +    + ++ ++ R + G  I  T  DE V
Sbjct: 757 --IGDLFST-EVEDGDQTLVVQSNKGIIYETILQDLNLSERTSNGSFISETISDEEV 810


>gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 817

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 293/752 (38%), Positives = 421/752 (55%), Gaps = 64/752 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             D+ EE+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+ 
Sbjct: 10  PPDDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLR 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 69  PERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 128

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  A   + + + +DTVDF PNYDGS QEP+ L A YPN+LVNG  GIAVG
Sbjct: 129 AAMRYTECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAVG 188

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEV+     +I +P  DLDALM  + GPD PTG  I+G  G+++AY  GR
Sbjct: 189 MATNMAPHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIVGLGGVRDAYEKGR 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  I+D++D +DR
Sbjct: 249 GTFKIRATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLTDR 308

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           Q G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 309 QHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A++ L+ R    
Sbjct: 369 RFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIAR---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+VQT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 425 ----------------------FELSDVQTQYILDTPLRRLTKFDRIELESERDRLKAEI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL  V  +  T RRT ++E          L++ D+ C    
Sbjct: 463 EELTRILDSDAELRKLVSAELAQVAKKFGTERRTVLLESADAPVTAVPLEVADDPC---- 518

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R       A      G         D +      +    +   +S G
Sbjct: 519 --RVLLSSTGLLART------ANGEPFPGEEQAKRAKHDVIVSAVPATARGDLGAVTSTG 570

Query: 597 FVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  LPI      +P   G A I   LSL  GE +  +     DESS     +  
Sbjct: 571 RLLRLAVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICLTTL--DESSPG---LAI 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
            T+ G V+R  + D+   N+     + L   D I+ +VE  T E D++  T   Q +R+P
Sbjct: 626 GTEQGVVKR-VVPDY-PANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYP 683

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            S +R   GR + G+ GI L  G +VIS   V
Sbjct: 684 ASQVRP-QGRPAGGMAGIKLGAGAKVISFTAV 714


>gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
 gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
          Length = 820

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 273/729 (37%), Positives = 431/729 (59%), Gaps = 41/729 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QD+ +R  LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D PD  L  +M+I++GPDFPTG +I G  GI+ AY TG+G I++R 
Sbjct: 185 HNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIIVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + +E   G R+QI + EIPY+VNKA ++++I EL  EKRI  I+++RDE+DR G R+ +
Sbjct: 245 KTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+++ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A+++ ++E++ +R
Sbjct: 305 ELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNKRPELMGIIAMLDAYISHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KA+ R H++ GL  A++ LDEV+++IR S +   A+  L Q             
Sbjct: 365 SEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQ------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T   SE Q  AI+ L+L RLT     D+  E   L  +I     IL 
Sbjct: 412 -------------TYQFSERQAEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550
               L+  +K EL  +K    TPR T I   + +  ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEGELVKTLKAELTEIKKNYKTPRLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A     KG   + M++ D    +  ++T  ++L F+S G F+Y+  V  LP  
Sbjct: 519 TSYRSYTA----SKG-DELAMKETDHAIFIEKMNTMDALLLFTSHGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
             +  G  + +I++ +  GE +   +P  +   +     +VF T+ G  + + ++++  Q
Sbjct: 573 RWKNLGDHVSHIVTEMGSGEEVIQALPLSKANETQK---LVFLTQAGMTKVSLIANYRPQ 629

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL + D++L+V       DI + T+ G  +R+PI+ I   +G  + GV+ I
Sbjct: 630 RYSKAMMAIKLKADDKLLNVAVADGSEDIFIATRNGYGLRYPITEIPE-SGTRTAGVKAI 688

Query: 728 SLAKGDQVI 736
           +L + D+V+
Sbjct: 689 NLKETDEVV 697


>gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 807

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/763 (37%), Positives = 444/763 (58%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+ D D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987]
 gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187]
 gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
 gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987]
 gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187]
 gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
          Length = 807

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 287/763 (37%), Positives = 444/763 (58%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L K D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINL-KED 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             ++    L+ D D   ++  +    A +RL + + E+ T  K
Sbjct: 692 DYVAAGKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + A  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVAAGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
 gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A
 gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
          Length = 744

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 281/733 (38%), Positives = 425/733 (57%), Gaps = 71/733 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  + I +E++ +Y+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+  +K 
Sbjct: 2   ENRENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GE +GKYHPHG+ A+Y+AL RMAQD+++R  LI GQGNFGS+DGDP A  RY
Sbjct: 62  FKKSARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   A  +L D+ KDTVDF+PN+D +  EP VL +++PN+L NG  GIAVG+AT+I
Sbjct: 122 TEAKLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV +  V +  NP I +D +MEI++GPDFPTG VI     +K  Y TGRG I +
Sbjct: 182 PPHNLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +G +H+EK  G RE+IV+TEIPYQVNKA +++KIA+ VR  +I +I+D+RDE+D++G R+
Sbjct: 242 KGKAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELKR A  + +L +LY+YT L+  F VN+V L   +P+   +  +L+ F+  R EV++
Sbjct: 302 VVELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+KY L K +DR H++ GL  A+  +D+++  IR S +   AR  LM+           
Sbjct: 362 RRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +A+L+LRL RLT L R+ +  E   L  +I+    +
Sbjct: 412 ----------------FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKIEYYKKL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED---CIVREDMVVTVSHLGY 547
           ++S    + +  +E   +  +    RRT  + G+ ++++      ++++  ++ V  L  
Sbjct: 456 VASEGERIKVFIEETEELVKKYGDKRRT-FIGGVKEVKEGSITVAVLQDGSIIPVEELPL 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K   +++ R                  F   LF+VS           G VY    W   
Sbjct: 515 EKAPVVNILRV----------------PFTEGLFLVSNR---------GRVY----W--- 542

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           I   QA   + +++ S  + E+I         E   N L  + ATK G V++  L++F +
Sbjct: 543 IAGSQALQGSKVSLKS--REEKIVGAFI---REKFGNRL--LLATKKGYVKKIPLAEF-E 594

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G   +KL   DE++S+ +   E  ILL TK G+  RF +  +   +   + GV+GI
Sbjct: 595 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPP-STPGARGVQGI 653

Query: 728 SLAKGDQVISMAI 740
            L K D+   + I
Sbjct: 654 KLEKNDETSGLRI 666



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 40/240 (16%)

Query: 477 LNSLGIEIKECLDILSSRSRLLGII-KQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +N L +   E L ++S+R R+  I   Q L   K  L + R  +IV            +R
Sbjct: 520 VNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIV---------GAFIR 569

Query: 536 EDM---VVTVSHLGYVKRVPLSV--YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           E     ++  +  GYVK++PL+   Y+AQ     G   + + + D V  +      T +L
Sbjct: 570 EKFGNRLLLATKKGYVKKIPLAEFEYKAQ-----GMPIIKLTEGDEVVSIASSVDETHIL 624

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS----WN-N 645
            F+  G V +  V  +P  +P ARG          QG ++        DE+S    WN  
Sbjct: 625 LFTKKGRVARFSVREVPPSTPGARG---------VQGIKLEK-----NDETSGLRIWNGE 670

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            Y++  T  G V++    +  + NR  K      ++D ++ +    +E ++L+TTK G+ 
Sbjct: 671 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 730


>gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
 gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
          Length = 824

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/750 (38%), Positives = 432/750 (57%), Gaps = 64/750 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + S+++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LL+++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG VA+I  P++    L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLSSGLRDTYLVGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE     K    R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A    +L  L R T+LQS F   ++AL   +P + +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQPRQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQEARDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL  L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELEELQAERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + QEL  +K    TPRRTR+VEG       D ++ E       +  
Sbjct: 457 LRLLLDNRDQLLDAMVQELKGLKKRFSTPRRTRLVEG------GDALMAERAASQRPNTE 510

Query: 547 YVKRVPLSVYRAQRR---GGKGRSGVV---MRDEDFVTDLFIVSTHTS------------ 588
            +++  L    A  R      G+  V+   +     +++   V  H S            
Sbjct: 511 LLRQQALEALPADARLLIQADGQVKVMSPPVLGRMHLSEPCAVGDHPSPAQVILPIEPSP 570

Query: 589 -VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L  S+ G V   + W      P +  K L + L    G+ +  I+  P  + +  +L 
Sbjct: 571 RLLGVSASGRVALVR-WEFAGQQPGSLEKFLPSGLD---GDPLIAILELPVGDGTEFSLG 626

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  +  G  +R  L+D + ++      +KL     + S   C + +D++L + +G+ +R
Sbjct: 627 LL--SSDGRFKRLPLADVLDLSGRATSVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLR 684

Query: 708 FPIS-AIRVFAGRNSVGVRGISLAKGDQVI 736
            P++ ++    GR + G   + L  G++++
Sbjct: 685 LPVNDSVLPKMGRLAQGPMTMRLLPGEELV 714


>gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
 gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
          Length = 968

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 293/748 (39%), Positives = 423/748 (56%), Gaps = 64/748 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M ++YL YAI V   RA+PD+RDGLKPVHRRIL+G  Q+    ++ Y 
Sbjct: 11  DNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGAYQLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GKYHPHG+ ++YDA+  MAQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSMDGDGAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  +L D+ K+TVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV DG +A IDN +I    LM  ++GPD PTG +++G+  I  AY TG G + +R 
Sbjct: 191 HNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILIGQNSILAAYETGEGKVTLRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            ++IE+    R  IV+TE P++ NKA +L+ I+E+  +KR    +  I D+RDESDR G 
Sbjct: 251 KTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESIVDIRDESDRSGV 310

Query: 309 RVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIEL++ A    AD +L  L++ T LQ   S NMVAL   KP+   L  I+K +V  +
Sbjct: 311 RAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGKPQTMGLKTIIKHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RRT   L+ A  R H++ G   A+  LDE+++ IR S + + A            
Sbjct: 371 KEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDAG----------- 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                ++LI    +T          E+Q  AILEL L RLTGL     + E   L   IK
Sbjct: 420 -----VNLISKFGFT----------EIQAEAILELMLYRLTGLEIKVFQKEYAELEKTIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVT 541
           +   ILS    LL ++K EL  V D+   PR+T I+    E  +D+  E+ IV ED+++T
Sbjct: 465 KLKKILSEEKELLKVVKNELKEVSDKYRNPRKTSIIKDDNEAKIDV--EELIVVEDVMIT 522

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++KR+PL  +   R   K    +  R+ D +  LF  +T  S+L F++ G +Y+ 
Sbjct: 523 LSKDGFIKRIPLKTF--NRLNAKAED-IEYREGDELKFLFKSNTTESILLFTNKGNMYQT 579

Query: 602 KVWRLPIGSPQARGKALINIL-SLNQGER-------ITTIMPFPEDESSWNNLYVVFATK 653
           K   +P G  + +G+ + NI+ +LN  E        +T+ +P         + Y+ F T 
Sbjct: 580 KGINIPEGKWKEKGEKVDNIIKTLNLEEENIIFATSVTSFIP---------SKYIQFITS 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPI 710
            G ++R+ L  F Q + +   A+KL   +E++ V    QE     I   TK G      I
Sbjct: 631 RGGIKRSSLDKF-QTSYTKLQAIKLKELEEVIDVILLNQEEVKEFISFETKEGLSFSLQI 689

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISM 738
             I     RN +     +L+  D++I +
Sbjct: 690 PKIEDLP-RNILPTIMFNLSNKDEIIKV 716



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 16/161 (9%)

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWN 644
           ++VL F++ G V+K   + L   S  ++G+  ++ +  ++ + E++  +      E    
Sbjct: 757 SNVLMFTNKGKVFKIPAFLL---SGVSKGELPLDKIVDNIEKDEKVIKVFSLKTFEE--- 810

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVET---CTQENDILLTT 700
           N ++ F T+ G +++  L++F   N S +I  K     DE++SVE    C  E  +L+ T
Sbjct: 811 NKFIYFFTRRGMIKKTALTEF-DGNYSTQITYKFKYDNDELISVELYDDCQVE--MLIIT 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           K    ++F    +    G+ + GV GISL + D+VI  +++
Sbjct: 868 KKAMGIKFSSENVNTM-GKVASGVTGISLKENDEVIYGSLI 907


>gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
 gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
          Length = 826

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 308/897 (34%), Positives = 484/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +     +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    ++R PI    
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRLIFVQTAKTTQHLLMFTSLGNV----IYR-PIHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFAATRLGQIKRVER 619

Query: 663 SDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G
Sbjct: 620 KEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K +  +  A + +  + Y         +  QR    G  + ++  +  
Sbjct: 678 AKAAGVKAMNL-KANDALQAAFICNTSSFY---------LLTQR----GSLKRVSIEEIP 723

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +     V E+GF                           
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVVEQGF--------------------------- 756

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             IG L +   V +NDQI+LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 --IGDLFST-EVEENDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)]
 gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)]
          Length = 818

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 294/754 (38%), Positives = 422/754 (55%), Gaps = 71/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+   
Sbjct: 12  DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPE 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA
Sbjct: 72  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+ +AA  + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 132 MRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G  GI++AY TGRG+
Sbjct: 192 TNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDAYETGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++D +DR  
Sbjct: 252 FKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAH 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++  +K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+R      
Sbjct: 372 TVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER------ 425

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQT+ IL+  L RLT   R ++ +E + L  EI+E
Sbjct: 426 --------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L + D+ C      
Sbjct: 466 LTRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDPC------ 519

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     PL      +R             D +      +    V   +S
Sbjct: 520 RVLLSSTGLLARTANDEPLVTEAGAKR----------VKHDLIVSAVPATARGEVGVVTS 569

Query: 595 LGFVYKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP     + +P  A G  L   +SL   E +  +     DESS     +
Sbjct: 570 GGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTL--DESSPG---L 624

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T+ G V+R  + D+   N+     + L   D I+  VE  T + D++  T   Q +R
Sbjct: 625 ALGTEQGVVKR-VVPDYPS-NKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLR 682

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +  S +R   GR + GV G+ LA G +VIS   V
Sbjct: 683 YQASQVRP-QGRPAGGVAGVKLADGAKVISFTAV 715


>gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
 gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
          Length = 807

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/764 (37%), Positives = 444/764 (58%), Gaps = 47/764 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG 672
            + NI+SL++ E I   T +  F E++      ++VF TK+G +++ +L+ + +Q     
Sbjct: 578 HVANIVSLDRDETIIWATVVSNFEEEKR-----FIVFVTKNGMIKKTELNQYKVQRYSRA 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + 
Sbjct: 633 FVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           D V S    L+AD D   ++  +    A +RL + + E+ T  K
Sbjct: 692 DYVAS-GKPLNADKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 807

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 296/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 819

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 280/742 (37%), Positives = 442/742 (59%), Gaps = 49/742 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E  SL  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K EL  +K +  TPRRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELVAVLKAELSEIKKKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A    GK    + M++ D    +  +++  ++L F+S G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS--NGK---ELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
             +  G  + ++ S L+ GE I +   I  F E++        +F TK+G  +++ ++++
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIDIQTFTEEKR------FLFVTKNGMTKQSLITNY 626

Query: 666 IQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +  R  K  M  KL   DE+LSV       DI L TK G  +R+PI+ I   +G  + G
Sbjct: 627 -KPQRYSKSMMGIKLKDDDELLSVHLIDGTEDIFLATKNGYGLRYPIAEIPE-SGARTAG 684

Query: 724 VRGISLAKGDQVISMAIVLHAD 745
           V+ I+L + D VI   ++   D
Sbjct: 685 VKAINLKQDDTVIGGVVLTPND 706


>gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 816

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 293/754 (38%), Positives = 423/754 (56%), Gaps = 73/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EE+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+  +
Sbjct: 12  DDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 71  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + +DTVDF+ NYDG  +EPV L A YPN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G TGI++AY +GRG+
Sbjct: 191 TNMPPHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIVGLTGIRDAYESGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DRQ 
Sbjct: 251 FKIRATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRQH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEIKNGFIPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++       
Sbjct: 371 DVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEH------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+QT+ IL+  L RLT   R ++ +E + L  EI E
Sbjct: 425 --------------------FSLSEIQTQYILDTPLRRLTKFDRIELESERDRLNGEIDE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  TPRRT ++E          L + D+ C      
Sbjct: 465 LTGILESDAELRKLVSSELAAVAKKFGTPRRTVLLESAGTPAPAASLQVADDPC------ 518

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     PL   R++R              D +    + +    V   +S
Sbjct: 519 RVLLSSTGLLARTATGEPLVDGRSRR-----------SKHDVIVSAVLTTQRGEVGAVTS 567

Query: 595 LGFVYKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP       +P  A G  +   LSL   E +  +     DESS     +
Sbjct: 568 SGRLLRLSVIDLPQLPDTATTPNLAGGAPVAEFLSLEADETLICLTTL--DESSPG---L 622

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T  G V+R  + D+   N+     + L   D I+   E  T E D++  T   Q +R
Sbjct: 623 ALGTLQGVVKR-VVPDY-PANKEELEVITLREGDRIVGGAELHTGEEDLVFITSDAQLLR 680

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +P S +R   GR + G+ GI LA+G +VIS   V
Sbjct: 681 YPASQVRP-QGRPAGGMTGIKLAEGAEVISFTAV 713


>gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 807

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 296/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 307/896 (34%), Positives = 486/896 (54%), Gaps = 107/896 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+  A + +  + Y         +  QR              
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSAFICNTSSFY---------LLTQR-------------- 711

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                 G++     +E+    +           KR       + N+  +   A  V++  
Sbjct: 712 ------GSLKRVSIEEIPATSR----------AKRGLQVLRELKNKPHRVFLAGAVAEQE 755

Query: 837 EIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +G L +   V +NDQ +LV S+KGT+  + + ++ ++ R + G  I  T  DE V
Sbjct: 756 FVGDLFST-EVEENDQTLLVQSNKGTIYEIRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
          Length = 818

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 294/754 (38%), Positives = 422/754 (55%), Gaps = 71/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+   
Sbjct: 12  DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPE 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA
Sbjct: 72  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+ +AA  + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 132 MRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G  GI++AY TGRG+
Sbjct: 192 TNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDAYETGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++D +DR  
Sbjct: 252 FKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAH 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++  +K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+R      
Sbjct: 372 TVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER------ 425

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQT+ IL+  L RLT   R ++ +E + L  EI+E
Sbjct: 426 --------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L + D+ C      
Sbjct: 466 LSRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDPC------ 519

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     PL      +R             D +      +    V   +S
Sbjct: 520 RVLLSSTGLLARTANDEPLVTEAGAKR----------VKHDLIVSAVPATARGEVGVVTS 569

Query: 595 LGFVYKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP     + +P  A G  L   +SL   E +  +     DESS     +
Sbjct: 570 GGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTL--DESSPG---L 624

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T+ G V+R  + D+   N+     + L   D I+  VE  T + D++  T   Q +R
Sbjct: 625 ALGTEQGVVKR-VVPDYPS-NKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLR 682

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +  S +R   GR + GV G+ LA G +VIS   V
Sbjct: 683 YQASQVRP-QGRPAGGVAGVKLADGAKVISFTAV 715


>gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
 gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
          Length = 825

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 310/899 (34%), Positives = 489/899 (54%), Gaps = 113/899 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELRDVKRQFATPRLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  LFI S  T+  +L F++LG V    ++R P+  
Sbjct: 517 PRSFSASTLEEIGK-----RDDDRL--LFIQSVKTTQHLLIFTTLGNV----IYR-PVHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEVLYVEVVDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL +K G  +RF I  + V 
Sbjct: 618 ERKEFSPWRTYRSKSVKYAKLKDDSDQIVAVAPI-KLDDVLLISKNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D  +  A + +  + Y      +    + +R+    TEEI    
Sbjct: 676 VGAKAAGVKAMNL-KADDELQAAFICNTSSFY-----LLTQRGSLKRV---STEEIP--- 723

Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             ++       +  +ELK K   +     VSE+GF                         
Sbjct: 724 --ATSRAKRGLQVLRELKSKPHRVFLAGAVSEQGF------------------------- 756

Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               IG L +   V D +Q +++ S+ GT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 ----IGDLFST-EVEDGEQTLVIQSNNGTIYEAILQDLNLSERTSNGSFISDTISDEEV 810


>gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
 gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
          Length = 807

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 288/763 (37%), Positives = 444/763 (58%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+ D D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
 gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
          Length = 807

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   +L S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
 gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
          Length = 824

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 278/744 (37%), Positives = 430/744 (57%), Gaps = 53/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S S+  EM++SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + + KCA
Sbjct: 13  IISTSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RMAQD+S R  L+ G GNFGS+D DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRL 132

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A+  +L ++G++ +DF  N+D S QEP+VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 133 SSIANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+++ P++  + L +II GPDFPTG  I+   GIK+AY  G+G I +RGV 
Sbjct: 193 LGELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQTEGIKDAYRDGKGIIRVRGVV 252

Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IEK +       +R  +++TE+PYQVNKAA +EKIA+LV   R+  IAD+RDESDR G 
Sbjct: 253 SIEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A   ++L +LY+ T+L+  F   M+AL   +P++ +L  +L+ F++FRE+ 
Sbjct: 313 RVVIELKRDAVTKLVLKELYKKTALEHNFGAIMLALVDNQPQQLSLRSLLEEFLSFREKT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+    L   +D++ +L GL IA+ANLD+V+ I+  S +   A+ +  +         
Sbjct: 373 LNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKE-------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + L+E Q   IL + + RLTGL R  I  E   L I++ +  
Sbjct: 425 ------------------LGLNEKQANGILAMPMRRLTGLERKKIETEYEELQIKVNKLE 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVT--- 541
            +L +R   L  +K+EL S+K +    RRTRI+      + ++E +   V +  ++    
Sbjct: 467 ILLKNRKEFLAELKKELRSLKKKYGDKRRTRIIGKDTTKINNIETQKLDVPKQPILQSKK 526

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR---DEDFVTDLFIVS----THTSVLFFS 593
            +SH    K++ L++ +        +  V  R   D  F   L I S        ++  +
Sbjct: 527 KISHTP--KQLNLNLSKDSILEMTYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIVIT 584

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G  Y  K+  +P    Q+    LI++L  N  +   +++       +  N  ++  T 
Sbjct: 585 DNGKAYPIKILDIPYIDVQS--TFLISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTN 642

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G ++R +LS+   +   G   MKL + D +  +    +E++I++    G+ +RF +   
Sbjct: 643 QGKIKRIQLSELNSLTNRGLSLMKLKNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNE 702

Query: 714 RV-FAGRNSVGVRGISLAKGDQVI 736
            +    RN+ G +   L   ++++
Sbjct: 703 EIPVMNRNTQGEQAFRLRSKEEIV 726


>gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
          Length = 815

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 290/752 (38%), Positives = 420/752 (55%), Gaps = 71/752 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EE+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+  +
Sbjct: 12  DDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRRD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 71  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + ++TVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEVV     +I +P  DL+ LM  + GPD PTG  I+G  G+++AYATGRG+
Sbjct: 191 TNMPPHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIVGLGGVRDAYATGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR+ 
Sbjct: 251 FKIRATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLTDREH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   AR  LM+R      
Sbjct: 371 TVVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMER------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++QT+ IL+  L RLT   R ++ +E + L  EI+E
Sbjct: 425 --------------------FSLSDIQTQYILDTPLRRLTRFDRIELESERDRLTAEIEE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-------LLDMEDEDCIVREDMV 539
              IL S + L  ++  EL +V  +  T RRT ++E         L +ED  C       
Sbjct: 465 LSRILDSDAELRKLVSSELAAVSKKYGTDRRTVLLESSGAAAAVPLQVEDTPC------R 518

Query: 540 VTVSHLGYVKR----VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           V +S  G + R     PL+   A +R             D +      +    V   +S 
Sbjct: 519 VLLSSTGLLARTADATPLA--EAPKR----------VKHDLIVSAVAATARGEVGAVTSA 566

Query: 596 GFVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + + +V  LP       +P   G A +   L+L   ER+  +     DESS     + 
Sbjct: 567 GRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEFLTLEADERLVCLTTL--DESSPG---LA 621

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T  G V+R  + D+       ++    D    + + E  T E D++  T     +RFP
Sbjct: 622 LGTAQGVVKR-VVPDYPAHKEELEVISLRDGDRIVGATELRTGEEDLVFITDEAHLLRFP 680

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            S +R   GR + G+ G+ L +G +V+S   V
Sbjct: 681 ASVVRP-QGRPAGGMAGVKLGEGARVVSFTAV 711


>gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
 gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
          Length = 818

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 308/892 (34%), Positives = 489/892 (54%), Gaps = 93/892 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + +      G+     RD+D +  +FI S  T+  +L F++LG V    V  L    
Sbjct: 517 PRSFNSSTVDEVGK-----RDDDRL--IFISSAKTTQHLLIFTNLGNVIYRPVHELADIR 569

Query: 611 PQARGKAL---INILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSDF- 665
            +  G+ L   I     N+ E I T +    DE ++      FA TK G ++R +   F 
Sbjct: 570 WKEIGEHLSQTITNFETNE-EVIYTELVDNFDEGTY------FAVTKLGQIKRVERKQFS 622

Query: 666 ---IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 ++S K A   +  D+I+++ +  + +D++L T+ G  +RF I  + V  G  + 
Sbjct: 623 PWRTYKSKSVKFAKLKNEDDQIITL-SPIKLDDVMLVTQNGYALRFNIEEVPV-VGAKAA 680

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L K D V++ A +++ D+ Y      +    A +R+   D   +TS        
Sbjct: 681 GVKAINLKK-DDVLAAAFIVNTDSFY-----ILTQRGALKRMAVADI-PVTS-------R 726

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            N   +  ++LK K   +       FG++ +  D   S+                     
Sbjct: 727 ANRGLQVLRDLKSKPHRVFQAG-PVFGEQPAELDLFSSDN-------------------- 765

Query: 843 AVFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              P  + +QI+ ++S+KGT  +V + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ---PTAEEEQILSIISNKGTTYQVNLADLGLSERTSNGSFISDTISDEEVFS 814


>gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
 gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
          Length = 848

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 302/929 (32%), Positives = 476/929 (51%), Gaps = 146/929 (15%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRRI++ M ++G+  ++ Y KCA
Sbjct: 13  IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  +L ++ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID P +  + L EII GPDFPTG  I+   GIK AY TG+G I ++GV+
Sbjct: 193 LGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGVT 252

Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           H+E  S       +R  IVVTE+PYQVNK+  +EK+A+LV + R+  IAD+RDESDRQG 
Sbjct: 253 HVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR      +L  LY+ T+LQS F V ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+ ++ L +A+ R H+L GL IA+ NLD+V+ I+R +P+  TA+++  +         
Sbjct: 373 LTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE-------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + +SE Q  +IL + + RLTGL +  ++ E   L   I +  
Sbjct: 425 ------------------LTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL------------------------ 524
            +L+ R  L+  +K++L ++K +    RRTRIV                           
Sbjct: 467 VLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTT 526

Query: 525 ------LDMEDEDCI-------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
                    +D   +         +D V+T++  GY+     + + +     KG      
Sbjct: 527 PSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSIKKG------ 580

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILS---LNQG 627
              DF      +    S++  +  G  Y      +P   PQ ++  +L+N+L        
Sbjct: 581 --TDFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIP---PQESQPCSLLNLLPNSVQKNS 635

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           ++I +   FP+ +   N   ++  T  G ++R  +S+  QI   G   +KL   D +  +
Sbjct: 636 QKIASYFLFPQQK---NLSELILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDDRLGYL 692

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
              ++ +++ + T  G+ +R      ++   GRN+ G + + L  G+ ++          
Sbjct: 693 SLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVG--------- 743

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                      C   K+ +  +L +++ 
Sbjct: 744 -------------------------------------------CVTPKIDDNLLL-ITQS 759

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           G+GKR      RI+     G  A    SK + +  ++   P     ++ILV+++   + +
Sbjct: 760 GYGKRIPVNSLRITKLGEIGTMALQFSSKTDNLAGMILAKP---KKEVILVTNQERRLII 816

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSV 894
           P++ + I  +   G  +      E ++ V
Sbjct: 817 PIDSVGIWGKDGVGDQVVKLKPQESILLV 845


>gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
 gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
          Length = 807

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
 gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
          Length = 814

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 303/880 (34%), Positives = 479/880 (54%), Gaps = 109/880 (12%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIVVTEI
Sbjct: 188 KVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVVTEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             RD+D +  +  V T   +L F++LG V    ++R PI         L +I   + GE 
Sbjct: 519 --RDDDRLIFVQAVKTTQHLLMFTTLGNV----IYR-PIHE-------LADIRWKDIGEH 564

Query: 630 IT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDFIQI----NRSGKIA 675
           ++ TI  F  +E          +++    F AT+ G ++R +  +F       ++S K A
Sbjct: 565 LSQTITNFETNEEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYA 624

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              D  D+I++V    + +D+ L ++ G  +RF I  + V  G  + GV+ ++L K D V
Sbjct: 625 KLKDETDQIVAVAPI-KLDDVFLISQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KEDDV 681

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +  A + +  + Y         +  QR    G  + ++  +  ++       +  +ELK 
Sbjct: 682 LQSAFICNTSSFY---------LLTQR----GSLKRVSIDEIPATSRAKRGLQVLRELKN 728

Query: 796 KEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           K   +     V+E+GF                             +G L +   V++NDQ
Sbjct: 729 KPHRVFLAGAVAEQGF-----------------------------VGDLFST-EVDENDQ 758

Query: 853 IILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +LV S+KGT+  + + ++ ++ R + G  I  T  DE V
Sbjct: 759 TLLVQSNKGTVYEIRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 308/897 (34%), Positives = 482/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNV----IYR-PIHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYAEVLEQFDDATTYFAATRLGQIKRVER 619

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G
Sbjct: 620 KEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K D V+  A + +  + Y      +    + +R+    TEEI      
Sbjct: 678 AKAAGVKAMNL-KEDDVLQSAFICNTSSFY-----LLTQRGSLKRV---STEEIP----- 723

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +     V+E+GF                           
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF--------------------------- 756

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +G L +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 --VGDLFST-EVDGNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|228909406|ref|ZP_04073231.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|228940681|ref|ZP_04103244.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973599|ref|ZP_04134181.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980157|ref|ZP_04140471.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228779515|gb|EEM27768.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228786060|gb|EEM34057.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818925|gb|EEM64987.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228850183|gb|EEM95012.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|326941315|gb|AEA17211.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 807

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 298/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F+S G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|229151791|ref|ZP_04279990.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
 gi|228631604|gb|EEK88234.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
          Length = 807

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 81/164 (49%), Gaps = 27/164 (16%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           ++  D+        L+  F  N  + ++L ++KG  I +PV EI
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEI 567


>gi|206968720|ref|ZP_03229675.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|229071095|ref|ZP_04204321.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
 gi|229080801|ref|ZP_04213319.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|229179882|ref|ZP_04307228.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|229191681|ref|ZP_04318660.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|206735761|gb|EDZ52919.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|228591843|gb|EEK49683.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|228603563|gb|EEK61038.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|228702535|gb|EEL55003.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|228712035|gb|EEL63984.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
          Length = 807

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/830 (35%), Positives = 465/830 (56%), Gaps = 51/830 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG 672
            + NI+SL++ E I   T +  F E++      ++VF T++G +++ +L+ + +Q     
Sbjct: 578 HVANIVSLDRDETIIWATVVQNFEEEKR-----FIVFVTRNGMIKKTELNQYKVQRYSRA 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + 
Sbjct: 633 FVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ- 791
           D V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     + 
Sbjct: 692 DYVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRI 747

Query: 792 ---ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 748 VGIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774
           G + A+ + ++S+ +          L  +AD  +++I  ++  + +++RL+     ++  
Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471

Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +K   S +   I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G
Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883
           ++  D+        L+  F  N  + ++L ++KG  I +PV E   IR          I 
Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583

Query: 884 STAKDERVV 892
           S  +DE ++
Sbjct: 584 SLDRDETII 592


>gi|326803542|ref|YP_004321360.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651545|gb|AEA01728.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 281/772 (36%), Positives = 438/772 (56%), Gaps = 49/772 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +  + K A
Sbjct: 5   IQELSLDEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G YHPHG++++Y+A+ RM+Q W  R+ LI+  GN GS+DGDP AA RYTE RL
Sbjct: 65  KTVGNVIGNYHPHGDSSVYEAMVRMSQAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL KDTVD   N+D + +EPVVL A +PN+LVNG  GI+ G AT IPTHNL
Sbjct: 125 SKLADELLKDLNKDTVDTILNFDDTEEEPVVLPAGFPNLLVNGSQGISAGYATEIPTHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D     ID+P   ++ LM+ + GPDFPTG +I G+  +  AY TGRG +V+R  + 
Sbjct: 185 GEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGGIIQGKDQLIKAYKTGRGKVVVRAQTE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     R+QIV+TE+P++VNKA ++ K+ EL   + I  + ++RDESDR G R+++ELK
Sbjct: 245 VESLKAGRKQIVITELPFEVNKADLVRKMDELRLNRSIDGVMEVRDESDRSGLRIIVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A AD IL   +++T+LQ  ++ NMVA+N  +PE+  LI I++A++  R++VV RRT+Y
Sbjct: 305 KDADADQILQYYFKHTNLQINYNFNMVAINKQRPEQVGLIAIIQAYIDHRKDVVSRRTQY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA+ R H++ GL  A++ LD+V+ IIR S + + A+  L+                 
Sbjct: 365 DLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLI----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            S Y          S+ Q  AI+ L+L RLT      ++ E  SL   I +   ILS  +
Sbjct: 408 -SEYQ--------FSQAQAEAIVTLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDET 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L+ +I+ EL ++K    T R T+I   +  + ++ E  I  E++V  V+  GY+KR  L
Sbjct: 459 ILMKLIQSELKAIKKAYATDRLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +RD D V  L   ST  +++  ++ G    + V+ +     + 
Sbjct: 519 RSYQSSNFADLG-----LRDGDHVLYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI----N 669
            G+ L   + +   E+I  + P+ +D        +V AT+ G ++++KLS+  +I    N
Sbjct: 574 LGEHLSQRIPIASDEKIIQVYPYAKDSQDT----IVLATREGMIKQSKLSELKKIRGHKN 629

Query: 670 RSGKIAMKLDSRDEILSV-----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           ++ +I       DE+++      ++  Q  +++L T LG  +R+ IS I    G  + GV
Sbjct: 630 KASQIMPLSSPLDEVVNCYLVNNQSDKQNGEVILFTALGFSLRYQISEINT-VGLRAKGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             I+L   DQV++   V     D D++I         +R+   D + +T  K
Sbjct: 689 ISINLKDQDQVVNF--VYQDQVDEDQQILLATQRGYMKRMRWRDIQTMTRAK 738


>gi|320528086|ref|ZP_08029251.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
 gi|320131434|gb|EFW23999.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
          Length = 835

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 291/781 (37%), Positives = 441/781 (56%), Gaps = 59/781 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  YA  +I  RA+PD RDGLKPV RRIL+ M   G  W+  Y K A+  G 
Sbjct: 18  LEDIMGAGFGRYAKYIIQERALPDARDGLKPVQRRILYAMYHDGNTWDYAYRKSAKTVGL 77

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+ ++YDA+ RM+QDW +RL LI+  GN GS+D DP AA RYTE RL K   
Sbjct: 78  VIGNYHPHGDTSVYDAMVRMSQDWKVRLPLIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + +DL K+TV+  PN+D +  EP VL   +P +LVNG  GIA G ATN+P HNL EVVD
Sbjct: 138 VMEEDLDKNTVEMAPNFDDTEHEPTVLPVPFPVMLVNGATGIAAGYATNMPPHNLNEVVD 197

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS--HIEK 258
             +  I NP+  L  +M+I+ GPDFPTG ++ G  GI++A+ TG+G IV+R     H EK
Sbjct: 198 ATIYRIQNPESALTDVMDILTGPDFPTGGIVQGEAGIRDAFTTGKGRIVVRSKCEIHEEK 257

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +    +QI++TEIPY+V K  +++K+ E+   K I  I D+RDESDR+G R+V+++++  
Sbjct: 258 SC---QQIIITEIPYEVVKGQLVKKMDEIRVSKDIDGILDVRDESDREGLRIVVDVRKDI 314

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A++ILN  Y+ T LQ  ++ N VA+   +P +  L+G+L AF+AFR+EVV+RR++Y L+
Sbjct: 315 DANMILNYFYKNTDLQVYYNYNNVAIIDKRPVQVGLLGLLDAFIAFRKEVVLRRSRYELD 374

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H++ GL  AV+ LDEV+RIIR S +   A+R LM                    
Sbjct: 375 KMEARCHIIEGLMKAVSILDEVIRIIRASQDKGDAKRNLMNE------------------ 416

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G D      E Q+ AI+ LRL RL+      +R E   L  +I+E   I+ + + L 
Sbjct: 417 --FGFD------EPQSEAIVSLRLYRLSNTDIITLREEFAELVNQIEETKAIIENENVLH 468

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +I +EL +VK E    RRTRI   +  ++ +    I  E +VVTVS  GY+KRV +  Y
Sbjct: 469 SVIIKELRNVKKEYGQERRTRIEAEVEEINYDKTAMIANERVVVTVSRDGYLKRVSMRSY 528

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     ++D D +       T  ++L F+S G      VW++  G  +  G 
Sbjct: 529 NAV-----GDQETSIKDGDVLIGTTECDTLDTLLLFTSKGNYASIPVWQIDEGKWKDVGM 583

Query: 617 ALINILSLNQGERI-TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI- 674
            L  ++ ++  ++I   I+    D  +W    +V  +  G +++  ++++ Q+ R+ K+ 
Sbjct: 584 HLNKVVRIDGEDKIKNAILIKSFDTYAW----IVTVSSAGQIKKTPVNNW-QVERNNKVM 638

Query: 675 -AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            AM L    E++      +   IL+ +K G   RF I  I    G  S GV+ ++L KGD
Sbjct: 639 TAMNLSKDAEMIHAFIAYRNQQILMVSKDGYSYRFAIEDIPA-TGVKSKGVKAMNLGKGD 697

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + ++   V++A+   D  + YM ++   +R+    TEEI  +  +  ++GN+    C+ L
Sbjct: 698 K-LAWGCVMNAE---DPAVLYMTNVGQMKRI---HTEEI--VFGNRPMKGNLI---CKRL 745

Query: 794 K 794
           K
Sbjct: 746 K 746


>gi|319939076|ref|ZP_08013440.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812126|gb|EFW08392.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 818

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 301/887 (33%), Positives = 480/887 (54%), Gaps = 83/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIVVTEIPY +NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVVTEIPYDINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKSDA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + +      G+     RD+D +  +    T   +L F++LG V    V  L     +
Sbjct: 517 PRSFNSSTVDEVGK-----RDDDRLVFVSSAKTTQHLLIFTNLGNVIYRPVHELADIRWK 571

Query: 613 ARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   I +    E +     + E   +++       TK G ++R +  +F      
Sbjct: 572 EIGEHLSQTITNFETNEEVL----YAELVDNFDEGTYFALTKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   +  D+I+++ +  + +D++L T+ G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSVKFAKLKNEDDQIITL-SPIKLDDVMLVTQNGYALRFNIEEVPV-VGAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    A +R+   D   +TS         N   
Sbjct: 686 NLKKND-VLAAAFIANTDSLY-----ILTQRGALKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +       FG++ +  D   S+                        P 
Sbjct: 732 QVLRELKSKPHRVFQAG-PVFGEQPAELDLFSSDH-----------------------PT 767

Query: 848 NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            + +QI+ +VS+KGT  +V + ++ ++ R + G  I  T  DE V S
Sbjct: 768 AEEEQILSIVSNKGTTYQVNLADLGLSERTSNGSFISDTISDEEVFS 814


>gi|303286821|ref|XP_003062700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456217|gb|EEH53519.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1082

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/771 (35%), Positives = 413/771 (53%), Gaps = 96/771 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    ++ E   SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++  K + KCA
Sbjct: 62  IIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCA 121

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ ++YDAL RMAQD+S+   L++G GNFGS+D DPPAA RYTECRL
Sbjct: 122 RVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAAMRYTECRL 181

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  A   LL D+  D VDF   +DGS  EP VL AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 182 RSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSIPPHN 241

Query: 195 LGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGR---TGIKNAYATGRGSIVI 250
           L EV D       +PD   LD L++++  PDFPT  +I+      G ++ YATG+GS+ +
Sbjct: 242 LREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKGSVTL 301

Query: 251 RGVSHIE--------KTSGDREQIVVTEIPYQV-----------------NKAAMLEKIA 285
           RG +HIE        K +  +  +++T IPYQ                  NKA++  +IA
Sbjct: 302 RGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLCGQIA 361

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           +LV  +++  + D+RDESDR G RVV+E++R    + +  QLY  T LQ   SVN+V L 
Sbjct: 362 DLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRVSVNLVGLI 421

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           G +P+  TL+ I++ F+ FR E + RR ++ L+KA  R HV+ G     A  D VV  IR
Sbjct: 422 GREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDAVVAAIR 481

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            + +   A++ L +  ++                         LS+ Q+ A+L + L RL
Sbjct: 482 AAKDGPEAQKTLQEAPFS-------------------------LSKEQSEAVLAMPLRRL 516

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
           TGL  D +R E   L  ++++   +LS R+ ++  +  E   ++D+    R+T I     
Sbjct: 517 TGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDKYGVERKTLIDHSAA 576

Query: 526 DMEDEDCIVRE---------------------------------------DMVVTVSHLG 546
            +  E    R                                        D ++ ++  G
Sbjct: 577 KLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKG 636

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+   ++  Q +G  G+ G  MR  D VT +   +   +VLFF+  G VY  + + +
Sbjct: 637 YIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDI 696

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL--YVVFATKHGNVRRNKLSD 664
           P  S  A G     +L L +GE IT ++P        +N+  ++V  T  G V++  +S+
Sbjct: 697 PQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISE 756

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           F  INR+GK A+ L   D +  VE     + I++    G  + F + +IR 
Sbjct: 757 FANINRAGKRALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSIRA 807


>gi|227529214|ref|ZP_03959263.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350860|gb|EEJ41151.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 823

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/735 (37%), Positives = 431/735 (58%), Gaps = 44/735 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEKMTLEQLMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL
Sbjct: 126 SKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  V +++NPD  L+ LME I GPDFPTG +I G  GI+ AY TGRG IV+R  + 
Sbjct: 186 GEVLDALVYLLNNPDASLEKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRIVVRARTE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IELK
Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+A  ILN L + T LQ  ++ NMVA++  +P R  L  IL ++++F+++++ RRT++
Sbjct: 306 RGANAQGILNYLLKNTDLQINYNFNMVAIDEQRPMRVGLKRILISYLSFQKQIIRRRTQF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A+ R H++ GL  A++ LD+V++ IR S N + A+  L+                 
Sbjct: 366 NLNNAQHRLHIVEGLIKALSILDQVIKTIRGSKNRKDAKENLI----------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            + Y   ++        Q  AI+ L+L RLT     ++++E   L  +I+E   IL++  
Sbjct: 409 -NQYAFSAE--------QAEAIVTLQLYRLTNTDVTELKDEQKKLNQQIEEFQLILTNDQ 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++++E+L++K E   PRRT+I   +  L ++ +  + +ED+++ VSH GY+KR  +
Sbjct: 460 ELANVLRREMLAIKKEFGNPRRTKIESHVEKLRVDTKVTVAKEDVILLVSHAGYIKRSSV 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++A      G     +R++D+   +   +T   +  F++LG V    V  +     + 
Sbjct: 520 RSFKASPIDENG-----LREDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDARWKD 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +   + L + E I   M F + +       ++  T  G ++++  +D+   +R   
Sbjct: 575 TGEHISQTIGLAENEHIIKAMVFDKLDQPGT---IIMGTSDGQIKQSAFTDYKPGSRYKS 631

Query: 674 ---IAMKLDSRD-EILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +KL S +  ++SV   E   +   +L+ +  G  VRF ++ + V  G  + GVR 
Sbjct: 632 RTTTGIKLKSDEARLVSVDYYEPTNENRSLLVISHEGYAVRFDVADVPV-TGLRTGGVRA 690

Query: 727 ISLAKGDQVISMAIV 741
           I+L   D      +V
Sbjct: 691 INLKDDDYATDYTLV 705


>gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 264/731 (36%), Positives = 428/731 (58%), Gaps = 49/731 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ D++ IV  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            G+ +  I+ + + ER+    T+  F ++ +      ++ AT+ G ++++ LS F +  R
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFNDERA------IITATRQGMIKKSLLSGF-KSTR 626

Query: 671 SGK--IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + K  +AMK+   D ++SV     +     I L T  G  + +P+S + +  G  + G++
Sbjct: 627 TTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSEL-LDTGLRATGIK 685

Query: 726 GISLAKGDQVI 736
            I+L   D V+
Sbjct: 686 AINLKDEDHVV 696



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 747 DYD---ERICYMKH-MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFI- 800
           +YD   ++I  +KH +     L+    EE++ +K        ++ EE+  E+K+ ++ I 
Sbjct: 439 EYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIV 498

Query: 801 ------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L+++++G+ KRTS   F  S +   G++  D         ++ +   N  D  +
Sbjct: 499 PSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERD--------GVLKIIETNTQDYAM 550

Query: 855 LVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + ++KG  + +PV+   +++          I    +DERVV    + E
Sbjct: 551 VFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598


>gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
 gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis]
 gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
          Length = 823

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 306/899 (34%), Positives = 488/899 (54%), Gaps = 113/899 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F++LG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTTLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYKSKSVKYAKLKDDTDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D  +  A + +  + Y         +  QR    G  + ++  +
Sbjct: 676 VGAKAAGVKAMNL-KEDDTLQSAFICNTSSFY---------LLTQR----GSLKRVSIDE 721

Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             ++       +  +ELK K   +    +V+E+GF                         
Sbjct: 722 IPATSRAKRGLQVLRELKNKPHRVFLAGSVAEQGF------------------------- 756

Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +G L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 ----VGDLFST-EVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 818

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 306/822 (37%), Positives = 442/822 (53%), Gaps = 81/822 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+  ++
Sbjct: 12  EDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDR 71

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
            YVKCAR+ GEVMGK HPHG+ +IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA 
Sbjct: 72  GYVKCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAM 131

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTEC++  A   + + + +DTVDF  NYDG  +EPV L A YPN+LVNG  GIAVGMAT
Sbjct: 132 RYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAVGMAT 191

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNLGEV+     +I  P+ DL+ALM  + GPD PTG  I+G +GIK+AYA GRG+ 
Sbjct: 192 NMAPHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGGRIVGLSGIKDAYANGRGTF 251

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
            IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  G
Sbjct: 252 KIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRSHG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R E
Sbjct: 312 LRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQPLTMGLKELLEVYLDHRFE 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM+R       
Sbjct: 372 VVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMER------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQT+ IL+  L RLT   R ++ +E + L  EI E 
Sbjct: 425 -------------------FSLSEVQTQYILDTPLRRLTRFDRIELESERDRLTGEIDEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDMV 539
             IL S S L  ++  EL +V  +  T RRT ++E          L++ D+ C       
Sbjct: 466 TGILESDSALRKLVSAELAAVAKKFGTERRTVLLESAGTSVAAVPLEVADDPC------R 519

Query: 540 VTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           V +S  G + R     PL V     R             D +      +    V   +S 
Sbjct: 520 VLLSSTGLLARTANGDPLPVEEGGARA----------KHDVIVSQVAATARADVGAVTSY 569

Query: 596 GFVYKEKVWRLP-----IGSPQARGKALIN--ILSLNQGERITTIMPFPEDESSWNNLYV 648
           G + +  V  LP       +P   G A ++  +  L   E +  ++    DESS     +
Sbjct: 570 GRLLRLAVIDLPQLPDTAAAPNLAGGAPVSEFLSGLEADETVVCLLSL--DESSQG---L 624

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T+ G V+R  + D+   N+     + L   D I+ +VE  T E D++  T   Q +R
Sbjct: 625 ALGTEQGVVKR-VVPDY-PANKDELEVITLKEGDRIVGAVELRTGEEDLVFITDDAQLLR 682

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM--KHMSAQRRLI 765
           +P   +R   GR + G+ GI LA+  +VI  + V   D   D  +  +   H +    + 
Sbjct: 683 YPAGQVRP-QGRPAGGMAGIKLAENAKVIHFSAV---DPARDAVVFTVAGSHGTLDDSVR 738

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           SG               G +   RCQ   LK + +LT++  G
Sbjct: 739 SGKLTPFDQYPRKGRATGGV---RCQRF-LKGEDVLTLAWAG 776


>gi|218234483|ref|YP_002368409.1| DNA topoisomerase IV subunit A [Bacillus cereus B4264]
 gi|218162440|gb|ACK62432.1| DNA topoisomerase IV, A subunit [Bacillus cereus B4264]
          Length = 807

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 294/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  +LL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKKLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 785 ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G++  D+     
Sbjct: 483 IIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI----- 537

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVV 892
              L+  F  N  + ++L ++KG  I +PV E   IR          I S  +DE ++
Sbjct: 538 ---LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592


>gi|229075490|ref|ZP_04208479.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
 gi|229098039|ref|ZP_04228989.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|229104126|ref|ZP_04234800.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|229117057|ref|ZP_04246439.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228666461|gb|EEL21921.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228679333|gb|EEL33536.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|228685476|gb|EEL39404.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|228707739|gb|EEL59923.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
          Length = 807

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 299/829 (36%), Positives = 463/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDQPNSSVDDLLAVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+  L  R                  
Sbjct: 369 KAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q+ AI+ L+L RLT      +  E   L  +I E   IL S  RLL
Sbjct: 411 --------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWATVIPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAIKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEVDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAIKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  I+TV+++G+ KRT       SN    G++  D+        L+  F  N  + ++L
Sbjct: 501 QEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI--------LLERFDTNTTETVLL 552

Query: 856 VSDKGTLIRVPV---NEIRIASRATKGVVIFSTAKDERVV 892
            ++KG  I +PV    EIR          I S  +DE ++
Sbjct: 553 FTNKGNYIYLPVYEMPEIRWKDLGQHVANIVSLDRDETII 592


>gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 833

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 293/769 (38%), Positives = 433/769 (56%), Gaps = 76/769 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +V
Sbjct: 16  EENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRGHV 75

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP-PAAERYT 131
           KCAR+ GEVMGK HPHG++AIYDA+ RMAQ W++R+ L++G GNFGS+ GD  PAA RYT
Sbjct: 76  KCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMRYT 135

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++D + ++TVDFRPNYDG  +EP VL A +PN+LVNG  GIAVGMATN+ 
Sbjct: 136 EARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATNMA 195

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV     ++++PD  L+ LM+ + GPD PTG +I+G  GI++AYA GRG+  +R
Sbjct: 196 PHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIVGLEGIRDAYAKGRGTFRMR 255

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
             + IE  +  R+ IVVTE+PY V    ++ KI +LV+ K++  I+DL+D +DR  G R+
Sbjct: 256 ATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGLRL 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G + + +L +LYR T ++  F +N VAL   +P    L  +L+ +V  R EVV 
Sbjct: 316 VIEVKNGFNPEAVLAELYRLTPMEETFGINNVALVDGQPRTLGLRELLQVYVDHRLEVVR 375

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++   K ++R H++ GL +A+ N+DEV+ IIR S +   A+R LM+           
Sbjct: 376 RRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLME----------- 424

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE+Q + IL+  L RLT   R ++  E   LG EI     I
Sbjct: 425 ---------------TFELSEIQAQYILDTPLRRLTRFDRLELEKESEQLGKEIARLTAI 469

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDMVVTV 542
           L S  +L  ++ +EL  V  +  TPRRT ++E          L++ DE C+      V +
Sbjct: 470 LESDRKLRKLVAKELGEVAKKFSTPRRTVLLESSGQTAAAVPLEVPDEPCL------VLL 523

Query: 543 SHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           S  G + R     PL         G G         D +  +   +T   V   +S G +
Sbjct: 524 SSTGLLARTAGPGPLPA-----ESGSG-------PHDVLAAVVRATTRGEVGLVTSAGRM 571

Query: 599 YKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            K +V  LP      G P   G A I+   +L  GER+  +        + +   +   T
Sbjct: 572 IKVEVLDLPALPPGDGPPSLAGGAPISEYTTLADGERVVGLGSL-----TGHGPGLALGT 626

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
           + G V+R  + D+   NR     + L   D ++ +VE  + E+D++  T   Q +R+  +
Sbjct: 627 EQGVVKR-VVPDY-PANREEFEVISLKDGDRVVGAVELASDEHDLVFITSDAQLLRYAAA 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            +R   GR + G+ GI L++G +VI    V   D D + R+  +   SA
Sbjct: 685 NVRP-QGRAAAGMAGIKLSEGARVIWFGTV---DPDRESRVVTIAGSSA 729


>gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
 gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
          Length = 826

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 307/899 (34%), Positives = 483/899 (53%), Gaps = 113/899 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F++LG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTTLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFVATRLGQIKRV 617

Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V 
Sbjct: 618 ERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D  +  A + +  + Y         +  QR    G  + ++  +
Sbjct: 676 VGAKATGVKAMNL-KADDALQAAFICNTSSFY---------LLTQR----GSLKRVSIEE 721

Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             ++       +  +ELK K   +     V+E+GF                         
Sbjct: 722 IPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------------- 756

Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                G L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 ----FGDLFST-EVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 818

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/754 (38%), Positives = 421/754 (55%), Gaps = 71/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+  +
Sbjct: 12  DDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPD 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+++IYDAL R+AQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 72  RGYVKCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + ++TVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 132 MRYTECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I  P+ DLD LM+ + GPD PTG  I+G +GI++AYATGRG+
Sbjct: 192 TNMPPHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIVGLSGIRDAYATGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR    ++  +  R+ ++VTE+P+ V    ++ KI +LV  K++  IAD++D +DR  
Sbjct: 252 FKIRATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAH 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A+  L++R      
Sbjct: 372 EVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIER------ 425

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++QT+ IL+  L RLT   R ++ +E   L  EI E
Sbjct: 426 --------------------FALSDIQTQYILDTPLRRLTRFDRIELESEKEKLNTEIAE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L + D+ C      
Sbjct: 466 LTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESSGTQVAAVPLQVADDPC------ 519

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     P +     RR             D +      +    V   +S
Sbjct: 520 RVLLSSTGLLARTASAEPFTADEDGRR----------TKHDVIVSAVPATARGEVGAVTS 569

Query: 595 LGFVYKEKVWRLP-----IGSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP       +P   G A L   L+L  GE +  +M    DESS     +
Sbjct: 570 TGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTL--DESSPG---L 624

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T+ G V+R  + D+   N+     + L   D I+ +VE  T E D++  T   Q +R
Sbjct: 625 AIGTEQGVVKR-VVPDYPS-NKEELEVISLKEGDRIVGAVELRTGEEDLIFITDDAQLLR 682

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +  + +R   GR + G+ GI L +G +VIS   +
Sbjct: 683 YQAAQVRP-QGRPAGGMAGIKLTEGAKVISFTAI 715


>gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis]
          Length = 492

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/510 (45%), Positives = 334/510 (65%), Gaps = 27/510 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L+    +  II++EL  +     TPRRT+I
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKI 487


>gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis]
 gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis]
 gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis]
 gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis]
 gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis]
 gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis]
 gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis]
 gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis]
 gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis]
          Length = 493

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/510 (45%), Positives = 334/510 (65%), Gaps = 27/510 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L+    +  II++EL  +     TPRRT+I
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKI 487


>gi|307706407|ref|ZP_07643217.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
 gi|307618194|gb|EFN97351.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
          Length = 811

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 301/880 (34%), Positives = 476/880 (54%), Gaps = 109/880 (12%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDASVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +     +++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             RD+D +  +    T   +L F++LG V    ++R PI         L +I   + GE 
Sbjct: 519 --RDDDRLIFVQAAKTTQHLLMFTTLGNV----IYR-PIHE-------LADIRWKDIGEH 564

Query: 630 IT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDF----IQINRSGKIA 675
           ++ TI  F  +E          +++    F AT+ G ++R +  +F       ++S K A
Sbjct: 565 LSQTITNFETNEEILYVEVVDQFDDATTYFAATRFGQIKRVERKEFSPWRTYKSKSVKYA 624

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              D  D+I++V    + +D+LL ++ G  +RF I  + V  G  + GV+ ++L K D V
Sbjct: 625 KLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KADDV 681

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +  A + +  + Y      +    + +R+   +    +  K  S V         +ELK 
Sbjct: 682 LQSAFICNTSSFY-----LLTQRGSLKRVSIDEIPATSRAKRGSQV--------LRELKN 728

Query: 796 KEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           K   +     V+E+GF                             +G L +   V+ NDQ
Sbjct: 729 KPHRVFLAGAVAEQGF-----------------------------VGDLFST-EVDGNDQ 758

Query: 853 IILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++V S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 759 TLIVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis]
          Length = 494

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/510 (45%), Positives = 334/510 (65%), Gaps = 27/510 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L+    +  II++EL  +     TPRRT+I
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKI 487


>gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 431

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/448 (50%), Positives = 315/448 (70%), Gaps = 26/448 (5%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEELK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT + L+KA
Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L G  IA+ N+D ++ +IR S +   AR +L+++                    
Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGL 468
                    +++Q R+IL+++L RLTGL
Sbjct: 411 --------FTDIQARSILDMKLQRLTGL 430


>gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
 gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
          Length = 826

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 304/897 (33%), Positives = 480/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  I  AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEINKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +EK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNV----IYR-PIHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFAATRLGQIKRVER 619

Query: 663 SDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G
Sbjct: 620 KEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI-RLDDVLLISQNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K D  +  A + +  + Y         +  QR    G  + ++  +  
Sbjct: 678 AKAAGVKAMNL-KADDALQAAFICNTSSFY---------LLTQR----GSLKRVSIEEIP 723

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +     V+E+GF                           
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF--------------------------- 756

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +G L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 --VGDLFST-EVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB
           8052]
 gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 970

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 281/699 (40%), Positives = 397/699 (56%), Gaps = 52/699 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E+II  D      I  + + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G  
Sbjct: 5   NENIIPKD----NNIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYGSY 60

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            +    ++ Y K ARI G+++GKYHPHG++++Y+++  +AQD+S R  LIEG GN+GS+D
Sbjct: 61  MLKAFPDRPYYKSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGSID 120

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL   A  +L D+ KDTV+  PNY  S  EP VL +RYPN+LVNG  G
Sbjct: 121 GDGAAAMRYTEARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGAFG 180

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG+ATNIP HNLGEV +G +A IDN +I    LM+ I+GPD PTG +++G   I +AY
Sbjct: 181 IAVGLATNIPPHNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILIGEKSILSAY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIA 297
            TG G +  R  + IEK    R  I++TE PY+ NK+ +L+ I+E+  +KR    +  I 
Sbjct: 241 ETGEGKVAYRAKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALESIT 300

Query: 298 DLRDESDRQGYRVVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           D+RDESDR G R VIELK+ A  DV   +L  L++ T LQ   S NMVAL   KPE  +L
Sbjct: 301 DIRDESDRSGIRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVALANGKPETMSL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             I++ +V  ++E++ RRT+  L+ A+ R H++ G   A++ LDEV+  IR S + + A 
Sbjct: 361 KAIIRYYVEHQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSKKDAS 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+ +                             SE Q +AILEL L RLTGL  +   
Sbjct: 421 ENLISK--------------------------FGFSEAQAQAILELMLYRLTGLEIEIFE 454

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDE 530
            E   L   IK+   ILSS   LL ++K EL  + D+    RRT I+    E  +D+  E
Sbjct: 455 KEYAQLEKLIKKLEKILSSEKELLKVVKSELKEISDKYGNDRRTEIIHDDNESKIDV--E 512

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + I+ E+++VT+S  G+VKR+PL  Y    R       +  R+ D +  L   +T  ++L
Sbjct: 513 ELIIVEEVMVTISKDGFVKRIPLKNY---TRSSSNPEDIEYREGDSLKYLINSNTKDTLL 569

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLN-QGERITTIMPFPEDESSWNNLYV 648
            F+  GF+Y+ K   +P    + +G  L  I+ SLN   E+I   +       S      
Sbjct: 570 VFTDKGFMYQTKGINIPEMRWKEKGDRLDEIIKSLNLDNEKIIAAISIDNFNPSKA---F 626

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
            F TKHG ++ + L  F Q       A+KL   DE++ V
Sbjct: 627 RFITKHGGIKLSSLDKF-QTAYGKLQALKLRDGDELIDV 664



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 10/151 (6%)

Query: 589 VLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +L FS+ G+VYK  V+ +  + + +   +A I    + +GE+I +++     +S   +L 
Sbjct: 759 LLIFSNRGYVYKIPVFLMRNVLNKEINVEAFIG--KMEKGEKIISLISI---DSYDEDLG 813

Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQC 705
           V   TK G V++  L +F     +      K +  DE++SVE    +   +++ TK G  
Sbjct: 814 VYTFTKKGMVKKTLLKEFEGDFLKQACYKFKFED-DEVVSVEMNQIKIGHLIMITKKGMA 872

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +RFP+  + +  G+ + GV GISL   DQVI
Sbjct: 873 IRFPVENVNIM-GKIASGVTGISLRDEDQVI 902


>gi|294631866|ref|ZP_06710426.1| DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292835199|gb|EFF93548.1| DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 818

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 299/752 (39%), Positives = 422/752 (56%), Gaps = 63/752 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+ 
Sbjct: 10  PPDEPYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLR 69

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL R+AQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 70  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQSFSMRVPLVDGHGNFGSLGNDDPP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+ +A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAVG
Sbjct: 130 AAMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGEV+     +I  P+ DLDALM+ + GPD PTG  I+G +GI++AY +GR
Sbjct: 190 MATNMPPHNLGEVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDAYESGR 249

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++D +DR
Sbjct: 250 GTFKIRATVTVETVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDR 309

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RR++Y   + RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+R    
Sbjct: 370 RFEVVRRRSEYRRGRRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSEVQT+ IL+  L RLT   R ++  E   L  EI
Sbjct: 426 ----------------------FSLSEVQTQYILDTPLRRLTKYDRIELEAEKEKLTAEI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +  TPRRT ++E          L + D+ C    
Sbjct: 464 EELTRILDSDAELRKLVSTELAAVAKKFGTPRRTLLLEAGAVPVAAVPLQVADDPC---- 519

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P      Q   GK          D +      +    V   +S G
Sbjct: 520 --RVLLSSTGLLARTPNDEPLPQDADGK------RVKHDVIVSSVPATARGEVGVVTSAG 571

Query: 597 FVYKEKVWRLP-----IGSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  LP       +P   G A I   +SL   E +  +     DESS     +  
Sbjct: 572 RLLRVNVVDLPQLPETATAPNLSGGAPITEFVSLGDDETVICLTTL--DESSPG---LAL 626

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
            T+ G V+R  + D+   N+     + L   D I+ +VE  T E D++  T   Q +R+ 
Sbjct: 627 GTEQGVVKR-VVPDY-PANKDELEVITLREGDRIVGAVELRTGEEDLVFITDDAQLLRYQ 684

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            S +R   GR + GV GI LA G +VIS   V
Sbjct: 685 ASQVRP-QGRPAGGVAGIKLADGAKVISFTAV 715


>gi|322385168|ref|ZP_08058815.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
 gi|321270792|gb|EFX53705.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
          Length = 816

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 300/887 (33%), Positives = 479/887 (54%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YAELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   +  D+++++    + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFAKLKNEEDQVIALAPI-KLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY-----LLTQRGSIKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +       +G+   + DF +     + I                    
Sbjct: 732 QVLRELKTKPHRVFAAG-PVYGQ---AVDFDLFTTEAEAIE------------------- 768

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +QI+ V S+KGT+  + + ++ ++ R + G  I  T  DE V S
Sbjct: 769 ---EQILQVLSNKGTVYEINLVDLSLSERTSNGSFISDTISDEEVFS 812


>gi|323351526|ref|ZP_08087180.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
 gi|322122012|gb|EFX93738.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
          Length = 810

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 302/883 (34%), Positives = 475/883 (53%), Gaps = 85/883 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEM 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + IEK
Sbjct: 181 IDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTEIEK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A
Sbjct: 241 LKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++   
Sbjct: 301 NTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRFDKA 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++               
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD--------------- 404

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      +  E   L  +I     I+     + 
Sbjct: 405 ----------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR     +
Sbjct: 455 NLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G+     RD+D +  +    T   +L F+SLG V    V  L     +  G+
Sbjct: 515 SASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGE 569

Query: 617 ALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQINRS 671
            L   +S  +  E +     + E   S+       ATK G ++R +  +F       ++S
Sbjct: 570 HLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKS 625

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I+L K
Sbjct: 626 LKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAINLKK 683

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V++ A + + D+ Y      +    + +R+   D   +TS         N   +  +
Sbjct: 684 -DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGLQVLR 729

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ELK K   + +     FG+   + DF +     +                         D
Sbjct: 730 ELKTKPHRVFSAG-PVFGE---AVDFDLFTTEAEA----------------------SED 763

Query: 852 QIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 764 QILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 806


>gi|115371945|ref|ZP_01459257.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370910|gb|EAU69833.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 482

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/405 (55%), Positives = 298/405 (73%), Gaps = 1/405 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M  +G   N+ Y K A
Sbjct: 24  LIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+
Sbjct: 84  RVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TVDF PNYD S  EP+V+  ++PN+LVNG  GIAVGM TNIP HN+
Sbjct: 144 DRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNM 203

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DG + +ID+P   +  LM+ I GPDFPT A I GR GI  AY TGRG I IR  + 
Sbjct: 204 GEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATITGREGIARAYETGRGQITIRARTE 263

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE +  GDRE I++TEIPYQVNKA ++EKIA+LVREK++  I+D+RDESDRQG R+ IEL
Sbjct: 264 IETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIEL 323

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A + V+LN L+  T L++ F   M+A++G +P    L  +L  F++ R +V+ RRT+
Sbjct: 324 KRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRTLNLKELLDRFISHRRDVITRRTR 383

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           Y L KA  R H++ GL +A   +D VV +IR S +P+ AR  LM 
Sbjct: 384 YELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMH 428


>gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
          Length = 817

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 288/752 (38%), Positives = 422/752 (56%), Gaps = 64/752 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+ 
Sbjct: 10  PPDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLR 69

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 70  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+ +A   + + + +DTVDF PNYDG  +EPV L A +PN+LVNG  GIAVG
Sbjct: 130 AAMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNL EVV     +I  P+ DLDALM+ + GPD PTG  I+G +G+++AY TGR
Sbjct: 190 MATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGVRDAYRTGR 249

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  IR    +E+ +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 250 GTFKIRATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 309

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 310 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+R    
Sbjct: 370 RFDVVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+VQT+ IL+  L RLT   R ++  E + L  EI
Sbjct: 426 ----------------------FSLSDVQTQYILDTPLRRLTKYDRIELETERDRLNAEI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +    RRT ++E          L +ED  C    
Sbjct: 464 EELTRILDSDAELRKLVSGELAAVAKKFGNDRRTLLLESADVPAAPVPLQVEDAPC---- 519

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R       AQ    + +        D +      +    V   +S G
Sbjct: 520 --RVLLSSTGLLARTANDEPFAQDAAKRVK-------HDVIVSAVPTTARGEVGVVTSAG 570

Query: 597 FVYKEKVWRLPI-----GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  LP+      +P   G A L   +SL   E +  +     DESS     +  
Sbjct: 571 RLLRLNVVDLPVLPEAMPTPNLSGGAPLAEFVSLEDDEEVVCLTTL--DESSPG---LAL 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
            T+ G V+R  + D+   N+     + L   D I+ ++E  T E D++  T   Q +R+ 
Sbjct: 626 GTEQGVVKR-VVPDYPS-NKEELEVITLKEGDRIVGAIELRTGEEDLVFVTDDAQLLRYQ 683

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              +R   GR + GV G+ LA+G +VI+   V
Sbjct: 684 AGQVRP-QGRPAGGVAGVKLAQGAKVIAFTAV 714


>gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 311/907 (34%), Positives = 482/907 (53%), Gaps = 129/907 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA +RDESDR G R+  EL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAFEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +     V T   +L F+SLG V    ++R PI    
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRLIFAQAVKTTQHLLMFTSLGNV----IYR-PIHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R + 
Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATTYFAVTRLGQIKRVER 619

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       +++ K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G
Sbjct: 620 KEFTPWRTYKSKTVKYAKLKDETDQIVAVAPI-KLDDVLLISRNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K D V+  A            IC                       N 
Sbjct: 678 AKAAGVKAMNL-KEDDVLQSAF-----------IC-----------------------NT 702

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI----------- 827
           SS                  ++LT  ++G  KR S  +   ++R+ +G+           
Sbjct: 703 SSF-----------------YLLT--QRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPH 743

Query: 828 RATDVSKINEIGALVAVFP--VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFS 884
           R      + E G +V +F   V+ NDQI+LV S+KGT+    + ++ ++ R + G  I  
Sbjct: 744 RVFLTGAVAEQGFVVDLFSTEVDGNDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISD 803

Query: 885 TAKDERV 891
           T  DE V
Sbjct: 804 TISDEEV 810


>gi|324991105|gb|EGC23039.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK353]
          Length = 816

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 303/887 (34%), Positives = 479/887 (54%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A++++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANSELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRISELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +  V+   FG+   + DF +     +                      
Sbjct: 732 QVLRELKAKPHRVF-VAGPVFGE---AVDFDLFTTEAEA--------------------- 766

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 -SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
 gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
          Length = 826

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 305/899 (33%), Positives = 485/899 (53%), Gaps = 113/899 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G + +R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVAVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F++LG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTTLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V 
Sbjct: 618 ERKEFSPWRTYKSKSVKYAKLKDETDQIVAV-APIKLDDVLLISQNGYALRFNIEEVPVV 676

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + + + GV+ ++L K D  +  A + +  + Y         +  QR    G  + ++  +
Sbjct: 677 SAK-AAGVKAMNL-KADDALQAAFICNTSSFY---------LLTQR----GSLKRVSIDE 721

Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             ++       +  +ELK K   +     V+E+GF                         
Sbjct: 722 IPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------------- 756

Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +G L +   + +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 ----VGDLFST-EMEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6]
 gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6]
          Length = 823

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 300/889 (33%), Positives = 479/889 (53%), Gaps = 93/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +EK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +     +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    +  L     +
Sbjct: 517 TRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRWK 571

Query: 613 ARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVF-ATKHGNVRRNKLSDF----I 666
             G+ L   I +    E I  +    E    +++    F AT+ G ++R +  +F     
Sbjct: 572 DIGEHLSQTITNFETNEEILYV----EVVDQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G  + GV+ 
Sbjct: 628 YKSKSVKYAKLKDDTDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV-VGAKAAGVKT 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L K D V+  A + +  + Y         +  QR    G  + ++  +  ++      
Sbjct: 686 MNL-KEDDVLQSAFICNTSSFY---------LLTQR----GSLKRVSIDEIPATSRAKRG 731

Query: 787 EERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +  +ELK K   +     V+E+GF                             IG L +
Sbjct: 732 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------IGDLFS 762

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              + +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 763 T-DMEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
 gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
          Length = 826

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 307/899 (34%), Positives = 487/899 (54%), Gaps = 113/899 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEVIYVEVVDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+  A + +  + Y         +  QR    G  + +++ +
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSAFICNTSSFY---------LLTQR----GSLKRVSTEE 721

Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             ++       +  +ELK K   +     V+E+GF                         
Sbjct: 722 IPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------------- 756

Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +G L +   V +N Q +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 ----VGDLFST-EVEENYQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 282/732 (38%), Positives = 410/732 (56%), Gaps = 74/732 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+ +I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVRKPDLSDDKLLSLIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E     K    R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R TSLQS F   M+AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRRLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L KA DR  V+ GL  A+ +L  V+ +I+ + +   AR  LM        
Sbjct: 363 LTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL R+ +R E   L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLD----------------- 526
              +L +R +LL  + QEL  +K    TPRRTR+VEG   LL                  
Sbjct: 457 LKLLLDNRDQLLDALVQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPNAELQRRQA 516

Query: 527 ----MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                 D   ++++D  V V     + R+ L+   A   G +     ++     V  L  
Sbjct: 517 LEALPPDSRILIQDDGQVKVISPQLMGRLHLNEPTAL--GDEPSPARIILPIKPVAKLLA 574

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+    V              W      P +  + L   L   QG+ + +++  P+ E+ 
Sbjct: 575 VTASGRVALIR----------WEFAGQQPGSLERFLPTAL---QGDPVVSVLQLPDAEAD 621

Query: 643 WNNLYVV---FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            N   V      +  G  +R  + + + ++      +KL    E+ +   C +   + L 
Sbjct: 622 SNAAAVSSLGLLSSDGRFKRLAMQELLDLSGRAASVVKLKEGIELKTAVICQEGGALSLI 681

Query: 700 TKLGQCVRFPIS 711
           + LG+ +  P+S
Sbjct: 682 SDLGRVLHLPVS 693


>gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
 gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 799

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/737 (38%), Positives = 422/737 (57%), Gaps = 62/737 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ + KCA
Sbjct: 15  VIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPDRPFRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+AL R+ Q +S R  L+ G GNFGS+DGDPPAA RYTE RL
Sbjct: 75  RVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAMRYTETRL 134

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH  LL ++ +  VDF PN+D S +EP+VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 135 AAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+ID P + L  L+  + GPDFPTG VI+   G+  AY TGRG+I +RGV+
Sbjct: 195 LGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEGAGLLRAYRTGRGTITLRGVA 254

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  +       R+ IVVTE+PYQVNKAA +EK+A+LV + R+  IADLRDESDR+G R
Sbjct: 255 TLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRDESDREGLR 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A A  +L QLY  T+LQ  + +N++AL G +P + +L  IL  F+ FRE+ +
Sbjct: 315 VVIELKRDAPAAQLLEQLYHLTALQVTYGINLMALVGNQPRQLSLKEILSEFLQFREQTL 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+ ++ L  A+ R HV+ GL I++  +++V+ I+R + +   A+ ELM R         
Sbjct: 375 LRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMIR--------- 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LS+ Q  A++ + L RLT   R ++  E   L   I     
Sbjct: 426 -----------------LGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQT 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYV 548
           ++  R   L  +K+EL  +K E   PR T+I+      E   DC   + + + +S+ G  
Sbjct: 469 LIHQRPERLKALKKELRQLKKEFGDPRLTQILRETPAPEAVPDC-GGDSLWLEMSYRG-- 525

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
             +PL  +R                 + +   F   T   +  F+  G VY   V RLP+
Sbjct: 526 -DLPLQTWRPW--------------SEPLPLGFSAQTSDRLWVFTESGKVYPLSVERLPV 570

Query: 609 GSPQA--RGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            S +   R + L+ +L  + QGE + +++P    +++ + L  +  T+ G ++    S  
Sbjct: 571 TSHREGDRDQPLLTLLPESAQGETLLSVIP---SQATADKL--ILLTRQGRIKVIPSSSL 625

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +   G    KL + D +  V    Q + ++L T  G+   F +  I V  GR   G  
Sbjct: 626 QNLRGRGLQLTKLKAGDTLGWV-LPAQGDHLVLATSRGRVFHFFLPDIPVL-GRLHQGQA 683

Query: 726 GISLAKGDQVISMAIVL 742
            + L++  +++  AI L
Sbjct: 684 AVRLSR-QEILVGAIAL 699


>gi|327474465|gb|EGF19871.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK408]
          Length = 816

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 301/886 (33%), Positives = 476/886 (53%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDTVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ D+ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++
Sbjct: 304 KDANTDLILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIVGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETCVSVTRSGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    V  L     + 
Sbjct: 518 RSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
            G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F       
Sbjct: 573 IGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A KL + D+ +      + +D++L T+ G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   +
Sbjct: 687 LKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGLQ 732

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +       FG+      F     +G+                       
Sbjct: 733 VLRELKAKPHRVFAAGPV-FGEAVDFDLFTTEAEAGE----------------------- 768

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 769 --EQILQVISNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|218898690|ref|YP_002447101.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
 gi|218545498|gb|ACK97892.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
          Length = 807

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 298/829 (35%), Positives = 465/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + IE 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEIET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+  
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F+S G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWVTVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 37.7 bits (86), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  I+TV+++G+ KRT       SN    G++  D+        L+  F  N  + ++L
Sbjct: 501 QEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI--------LLERFDTNTTETVLL 552

Query: 856 VSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSV 894
            + KG  I +PV E   IR          I S  +DE ++ V
Sbjct: 553 FTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWV 594


>gi|196044554|ref|ZP_03111789.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225865578|ref|YP_002750956.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|229185831|ref|ZP_04313004.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
 gi|196024589|gb|EDX63261.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225786959|gb|ACO27176.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|228597543|gb|EEK55190.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
          Length = 807

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/764 (37%), Positives = 441/764 (57%), Gaps = 47/764 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +                  
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 411 --------FDFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG 672
            + NI+SL++ E I   T +  F E++      ++VF TK+G +++ +L+ + +Q     
Sbjct: 578 HVANIVSLDRDETIIWATVVQNFEEEKR-----FIVFVTKNGMIKKTELNQYKVQRYSRA 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + 
Sbjct: 633 FVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           D V S    L+ + D   ++  +    A +RL + + E+ T  K
Sbjct: 692 DYVAS-GKPLNGEKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 785 ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G++  D+     
Sbjct: 483 IIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI----- 537

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVV 892
              L+  F  N  + ++L ++KG  I +PV E   IR          I S  +DE ++
Sbjct: 538 ---LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592


>gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
 gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
          Length = 818

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 303/818 (37%), Positives = 439/818 (53%), Gaps = 73/818 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+  ++
Sbjct: 12  EDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDR 71

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
            YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA 
Sbjct: 72  GYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAM 131

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTEC++  A   + + + +DTVDF  NYDG  +EPV L A YPN+LVNG  GIAVGMAT
Sbjct: 132 RYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAVGMAT 191

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  I+G +GIK+AY  GRG+ 
Sbjct: 192 NMPPHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGGRIVGLSGIKDAYENGRGTF 251

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
            IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  G
Sbjct: 252 KIRATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRSHG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R E
Sbjct: 312 LRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRFE 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++R       
Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIER------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+QT+ IL+  L RLT   R ++ +E + L  EI E 
Sbjct: 425 -------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDRLNGEIDEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDMV 539
             IL S S L  ++  EL +V  +  T RRT ++E          L++ D  C       
Sbjct: 466 TGILESDSELRKLVSAELAAVAKKFGTERRTVLLESAGTPVAAVPLEVADTPC------R 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R        Q  GG           D +      +    V   +S G + 
Sbjct: 520 VLLSSTGLLARTANGEALPQEEGG------ARAKHDLIVSQVAATARADVGVVTSYGRLL 573

Query: 600 KEKVWRLPI-----GSPQ-ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  V  LP       +P  A G  +   LS L   E++  +     DESS     +   T
Sbjct: 574 RLSVIDLPQLPDTHAAPNLAGGAPVAEFLSGLEADEKVVCLTSL--DESSQG---LALGT 628

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
           + G V+R  + D+   N+     + L   D I+ +VE  T E D++  T   Q +R+P S
Sbjct: 629 EQGVVKR-VVPDY-PANKDELEVITLKDGDRIVGAVELRTGEEDLVFITDDTQLLRYPAS 686

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM--KHMSAQRRLISGDT 769
            +R   GR + G+ GI L+   +VI  + V   D   D  +  +   H +    + SG  
Sbjct: 687 QVRP-QGRPAGGMAGIKLSDNTKVIHFSAV---DPARDAFVFTVAGSHGTLDDSVTSGKL 742

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                        G +   RCQ   LK + +L ++  G
Sbjct: 743 TPFDQYPRKGRATGGV---RCQRF-LKGEDVLVLAWAG 776


>gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 803

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/731 (36%), Positives = 427/731 (58%), Gaps = 49/731 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ D++ IV  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            G+ +  I+ + + ER+    T+  F ++ +      ++ AT+ G ++++ LS F +  R
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFNDERA------IITATRQGMIKKSLLSGF-KSTR 626

Query: 671 SGK--IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + K  +AMK+   D ++SV     +     I L T  G  + +P+S +    G  + G++
Sbjct: 627 TTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELP-DTGLRATGIK 685

Query: 726 GISLAKGDQVI 736
            I+L   D V+
Sbjct: 686 AINLKDEDHVV 696



 Score = 38.5 bits (88), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 747 DYD---ERICYMKH-MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFI- 800
           +YD   ++I  +KH +     L+    EE++ +K        ++ EE+  E+K+ ++ I 
Sbjct: 439 EYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIV 498

Query: 801 ------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L+++++G+ KRTS   F  S +   G++  D         ++ +   N  D  +
Sbjct: 499 PSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERD--------GVLKIIETNTQDYAM 550

Query: 855 LVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + ++KG  + +PV+   +++          I    +DERVV    + E
Sbjct: 551 VFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598


>gi|228902096|ref|ZP_04066260.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
 gi|228966491|ref|ZP_04127544.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793213|gb|EEM40763.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857522|gb|EEN02018.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
          Length = 807

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 298/829 (35%), Positives = 465/829 (56%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + IE 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEIET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+  
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F+S G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + NI+SL++ E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANIVSLDRDETIIWVTVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ D D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 37.7 bits (86), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  I+TV+++G+ KRT       SN    G++  D+        L+  F  N  + ++L
Sbjct: 501 QEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI--------LLERFDTNTTETVLL 552

Query: 856 VSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSV 894
            + KG  I +PV E   IR          I S  +DE ++ V
Sbjct: 553 FTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWV 594


>gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
 gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
          Length = 826

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 307/896 (34%), Positives = 480/896 (53%), Gaps = 107/896 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +     +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSALEDTANVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F++LG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTTLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          + +    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITSFETNEEILYAEVVDQFEDAITYFAATRLGQIKRV 617

Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V 
Sbjct: 618 ERKEFSPWRTYKSKSVKYAKLKDETDQIVAV-APIKLDDVLLISQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+  + + +  + Y               L++          
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSSFICNTSSFY---------------LLT---------- 709

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                         Q   LK   I  +      KR       + N+  +   A  V++  
Sbjct: 710 --------------QRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQG 755

Query: 837 EIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            IG L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 756 LIGDLFST-EVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|317968471|ref|ZP_07969861.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0205]
          Length = 830

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 282/766 (36%), Positives = 425/766 (55%), Gaps = 77/766 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D  +E+ I  + +  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  
Sbjct: 11  PDPSDERRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTP 70

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 128 ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL   A+  +LD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGSDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEVVD  +A++  P++  + L+E++ GPDFPTG  +L  +G+++ Y  GRG
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPELSDEKLLELVPGPDFPTGGEVLTGSGLRDTYLYGRG 250

Query: 247 SIVIRGVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           SI +RGV+HIE     K    R  +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RD
Sbjct: 251 SIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVV+EL+R A+ + +L  L R T+LQS +   ++AL   KP + +L  +L+ F
Sbjct: 311 ESDRDGMRVVVELRRDANPEKVLADLQRRTALQSNYGAILLALVHGKPIQLSLRQLLQEF 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + +RE  ++RRTK+ L +A DR  V+ GL  A+  L  V+ +I  +P+  +A+  L    
Sbjct: 371 LDYRELTIIRRTKHALKRAEDRLEVVEGLITALNALQRVIEMITAAPDASSAKARLQVH- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + ++E Q  A+L + L RLTGL ++ +R E + L 
Sbjct: 430 -------------------------LDINERQADAVLAMPLRRLTGLEQESLRKEADDLR 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-------------- 527
            E      +L  R  LL  +  E  ++K    TPRRTR+VEG  ++              
Sbjct: 465 QERARLRHLLDERPALLDTMVAEFKALKKRFATPRRTRLVEGGDELVAQRTAAQRPNTEL 524

Query: 528 ----------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
                      D   +++ D  V V     + R+ L                 + D    
Sbjct: 525 LRQRAFEGLPSDGRLVIQADGQVKVIGPQLLGRLHLD------------EPAPLGDNPSP 572

Query: 578 TDLFI-VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
             L + +S+  ++L F+  G V   + W     +P    K L   +S   GER+  ++P 
Sbjct: 573 ARLILPISSRPALLAFTDAGRVALLR-WEFAGQNPGTLEKFLPEGMS---GERVVQLLPL 628

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
           P++    +   V   +  G  +R  L++F  ++      +KL     +  V  C   +D+
Sbjct: 629 PQEAEGKS---VGLLSSDGRFKRLPLAEFQDLSGRATSILKLKEGVSLKRVVLCQDGDDL 685

Query: 697 LLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIV 741
           ++ +  G+ +R  ++   +   GRN+ G   + L  G++VI  A V
Sbjct: 686 MVGSSTGRLLRLEVNEENLPVMGRNAQGPVLLRLLPGEEVIGAAAV 731


>gi|313623959|gb|EFR94061.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL J1-023]
          Length = 818

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 275/739 (37%), Positives = 441/739 (59%), Gaps = 44/739 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E   L  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A        + + M++ D    +  +++  S+L F++ G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     +S       +F TK+G  +++ ++++ + 
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIAI---DSFTEQKRFLFVTKNGMTKQSAITNY-KP 628

Query: 669 NRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R  K  +A+KL   DE+L+V       DI L TK G  +R+PI+ I   +G  + GV+ 
Sbjct: 629 QRYSKSMMAIKL-KEDELLNVYLIDGTEDIFLATKNGYGLRYPIAEIPE-SGARTAGVKA 686

Query: 727 ISLAKGDQVISMAIVLHAD 745
           I+L +GD VI   ++   D
Sbjct: 687 INLKQGDVVIGGVVLTPND 705



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 27/256 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK G V+R     +   N   ++AMK    D  + ++     + +LL T  G
Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTNKG 559

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +  P+  +     +N           GD V  +A  L A  +    I  +   + Q+R
Sbjct: 560 NFIYRPVHELPDIRWKNL----------GDHVSHLASDLSAGEEIRSVIA-IDSFTEQKR 608

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV------------SEKGFGKR 811
            +      +T     ++ +     +    +KLKE  +L V            ++ G+G R
Sbjct: 609 FLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKEDELLNVYLIDGTEDIFLATKNGYGLR 668

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               +   S     G++A ++ + + +   V + P NDN  I+L + +G+L ++  +E  
Sbjct: 669 YPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTP-NDNKHILLATQRGSLKQMKASEFE 727

Query: 872 IASRATKGVVIFSTAK 887
             SRA +G+++    K
Sbjct: 728 PISRAKRGLLMLRELK 743


>gi|328946256|gb|EGG40400.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1087]
          Length = 816

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 302/887 (34%), Positives = 476/887 (53%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTIEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L T+ G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +       FG+   + DF +     +                      
Sbjct: 732 QVLRELKAKPHRVFAAGPV-FGE---AVDFDLFTTEAEA--------------------- 766

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              DQI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 -SEDQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|327469988|gb|EGF15452.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK330]
          Length = 816

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 304/887 (34%), Positives = 472/887 (53%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPCLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 I  D     +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 406 -----KISYD----FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  L    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFLSPAKTTQHMLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY-----LLTQRGSIKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +       FG+   + DF +     +                      
Sbjct: 732 QVLRELKTKPHRVFAAGPV-FGE---TVDFDLFTTEAEA--------------------- 766

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +QI+ V S+KGT   + + +  ++ R + G  I  T  DE V S
Sbjct: 767 -SEEQILQVLSNKGTAYEINLADFSLSERTSNGSFISDTISDEEVFS 812


>gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis]
 gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis]
          Length = 485

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/508 (45%), Positives = 332/508 (65%), Gaps = 27/508 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT 518
           L+    +  II++EL  +     TPRRT
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRT 485


>gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius]
          Length = 803

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/737 (36%), Positives = 425/737 (57%), Gaps = 61/737 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GI+ AY TG+G +++R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGGIVQGIDGIRKAYETGKGKVIVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E + L  +I     IL +  
Sbjct: 408 ---------ATYDFTETQAEAIVMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +   PR + I E + +++ D++ IV  E ++++++  GY+KR  L
Sbjct: 459 ALLNVIKDELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T   V+ F++ G      V +L    P  
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYVMVFTNKGRYLLIPVHKL----PDV 569

Query: 614 RGKALINILSLNQGERITTIMPFPEDE--------SSWNNLY-VVFATKHGNVRRNKLSD 664
           + K L        G+ ++ I+P  EDE        S +N+ + ++ AT+ G ++++ LS 
Sbjct: 570 KWKDL--------GQHVSQIVPIEEDERVVNCYTVSDFNDEHAIITATRQGMIKKSLLSG 621

Query: 665 FIQINRSGK--IAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           F +  R+ K  +AMK+   D ++S   V        I L T  G  + +P+S +    G 
Sbjct: 622 F-KSTRTSKPLVAMKVKEGDALISVMYVPANAASQCITLLTHRGMSLTYPMSELP-DTGL 679

Query: 720 NSVGVRGISLAKGDQVI 736
            + G++ I+L   D V+
Sbjct: 680 RAAGIKAINLKDEDHVV 696



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 23/162 (14%)

Query: 747 DYDE---RICYMKH-MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFI- 800
           +YDE   +I  +KH +     L++   +E++ +K        ++ EE+  E+K+ ++ I 
Sbjct: 439 EYDELKQKIAALKHILENHDALLNVIKDELSEIKKQFKQPRLSVIEEKISEIKIDKEVIV 498

Query: 801 ------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L++++ G+ KRTS   F  S +   G++  D         ++ +   N  D ++
Sbjct: 499 PSETVMLSLTQAGYIKRTSLRSFNASGKEEIGLKERD--------GVLKIIETNTQDYVM 550

Query: 855 LVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
           + ++KG  + +PV+   +++          I    +DERVV+
Sbjct: 551 VFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVN 592


>gi|118478840|ref|YP_895991.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418065|gb|ABK86484.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
          Length = 807

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 284/764 (37%), Positives = 441/764 (57%), Gaps = 47/764 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKVFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +                  
Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E + L  +I E   IL S  RLL
Sbjct: 411 --------FDFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I + +  + ++ E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577

Query: 617 ALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG 672
            + NI+SL++ E I   T +  F E++      ++VF TK+G +++ +L+ + +Q     
Sbjct: 578 HVANIVSLDRDETIIWATVVQNFEEEKR-----FIVFVTKNGMIKKTELNQYKVQRYSRA 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + 
Sbjct: 633 FVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           D V S    L+ + D   ++  +    A +RL + + E+ T  K
Sbjct: 692 DYVAS-GKPLNGEKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 785 ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           I E++ +E+K+       +E  I+TV+++G+ KRT       SN    G++  D+     
Sbjct: 483 IIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI----- 537

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVV 892
              L+  F  N  + ++L ++KG  I +PV E   IR          I S  +DE ++
Sbjct: 538 ---LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETII 592


>gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 803

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/731 (36%), Positives = 426/731 (58%), Gaps = 49/731 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ D++ IV  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            G+ +  I+ + + ER+    T+  F ++ +      ++ AT+ G ++++ LS F +  R
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFNDERA------IITATRQGMIKKSLLSGF-KSTR 626

Query: 671 SGK--IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + K  +AMK+   D ++SV     +     I L T  G  + +P+S +    G  + G++
Sbjct: 627 TTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELP-DTGLRATGIK 685

Query: 726 GISLAKGDQVI 736
            I+L   D V+
Sbjct: 686 AINLKDEDHVV 696



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 747 DYD---ERICYMKH-MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFI- 800
           +YD   ++I  +KH +     L+    EE++ +K        ++ EE+  E+K+ ++ I 
Sbjct: 439 EYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIV 498

Query: 801 ------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L+++++G+ KRTS   F  S +   G++  D         ++ +   N  D  +
Sbjct: 499 PSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERD--------GVLKIIETNTQDYAM 550

Query: 855 LVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + ++KG  + +PV+   +++          I    +DERVV    + E
Sbjct: 551 VFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598


>gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 819

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 285/750 (38%), Positives = 416/750 (55%), Gaps = 63/750 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+  +
Sbjct: 12  DDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMGEMGLRPD 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + +VKCAR+ GEVMGK HPHG+A+IYDA+ RMAQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 72  RGFVKCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+  AA  + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVGMA
Sbjct: 132 MRYTESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G +GIK+AY +GRGS
Sbjct: 192 TNMPPHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGGRIVGLSGIKDAYESGRGS 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  
Sbjct: 252 FKIRATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVKDLTDRNH 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  LM+R      
Sbjct: 372 EVVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLMER------ 425

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+QT+ IL+  L RLT   R ++  E N L  EI E
Sbjct: 426 --------------------FSLSEIQTQYILDTPLRRLTKFDRIELETEQNRLNGEIDE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L++ D+ C V    
Sbjct: 466 LTGILESDAELRKLVSAELAAVAKKFATDRRTVLLESAGAPVAAVSLEVADDPCRVLLSS 525

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
              ++     +  P+    A+ +             D +      +    +   +S G +
Sbjct: 526 TGLLARTATAELPPVDPDAARAK------------HDVILSSVAATQRGDIGAVTSGGRL 573

Query: 599 YKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +  V  LP       +P  A G  L   LSL   E +  +     DE+S     +   T
Sbjct: 574 LRIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCLTTL--DEASPG---LALGT 628

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
             G V+R  + D+   N+     + L   D I+ + E  T + D++  T   Q +R+P +
Sbjct: 629 LQGVVKR-VVPDY-PANKDELEVITLKDGDRIVGATELRTGDEDLVFITSDAQLLRYPAA 686

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R   GR + G+ G+ L+ G  VIS   V
Sbjct: 687 QVRP-QGRPAGGMAGVKLSAGADVISFTAV 715


>gi|262282824|ref|ZP_06060591.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261076|gb|EEY79775.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 816

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 301/886 (33%), Positives = 478/886 (53%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++
Sbjct: 304 KDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    V  L     + 
Sbjct: 518 RSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
            G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F       
Sbjct: 573 IGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A   +  D+++++    + +D++L TK G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFAKLKNEGDQVIALAPI-KLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V+  A + + D+ Y      +    + +R+   D   +TS         N   +
Sbjct: 687 LKK-DDVLVAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGLQ 732

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +  V+   FG+   + DF +     +                       
Sbjct: 733 VLRELKTKPHRVF-VAGPVFGE---AVDFDLFTTEAEA---------------------- 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|327460305|gb|EGF06642.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1057]
          Length = 816

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 304/886 (34%), Positives = 478/886 (53%), Gaps = 83/886 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
             G+ L   +S N   R   I  + E   S+       ATK G ++R +  +F       
Sbjct: 572 EIGEHLSQTIS-NFDTREEVI--YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A KL + D+ +      + +D++L T+ G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFA-KLKNEDDRVIALAPIKLDDVMLVTRNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   +
Sbjct: 687 LKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGLQ 732

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +  V+   FG+   + DF +     +                       
Sbjct: 733 VLRELKTKPHRVF-VAGPVFGE---AVDFDLFTTEAEA---------------------- 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/731 (36%), Positives = 426/731 (58%), Gaps = 49/731 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ D++ IV  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            G+ +  I+ + + ER+    T+  F ++ +      ++ AT+ G ++++ LS F +  R
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFNDERA------IITATRQGMIKKSLLSGF-KSTR 626

Query: 671 SGK--IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + K  +AMK+   D ++SV     +     I L T  G  + +P+S +    G  + G++
Sbjct: 627 TTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELP-DTGLRATGIK 685

Query: 726 GISLAKGDQVI 736
            I+L   D V+
Sbjct: 686 AINLKDEDHVV 696



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 747 DYD---ERICYMKH-MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFI- 800
           +YD   ++I  +KH +     L+    EE++ +K        ++ EE+  E+K+ ++ I 
Sbjct: 439 EYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIV 498

Query: 801 ------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                 L+++++G+ KRTS   F  S +   G++  D         ++ +   N  D  +
Sbjct: 499 PSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERD--------GVLKIIETNTQDYAM 550

Query: 855 LVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + ++KG  + +PV+   +++          I    +DERVV    + E
Sbjct: 551 VFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598


>gi|327489842|gb|EGF21632.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1058]
          Length = 816

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 274/740 (37%), Positives = 426/740 (57%), Gaps = 45/740 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++
Sbjct: 304 KDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    V  L     + 
Sbjct: 518 RSFSASTVEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
            G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F       
Sbjct: 573 IGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKMGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADY 748
           L K D V++ A + + D+ Y
Sbjct: 687 LKK-DDVLAAAFIANTDSLY 705


>gi|313619190|gb|EFR90963.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL S4-378]
          Length = 762

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 274/742 (36%), Positives = 442/742 (59%), Gaps = 44/742 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E   L  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A        + + M++ D    +  +++  S+L F++ G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     +S       +F TK+G  +++ ++++ + 
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIAI---DSFTEQKRFLFVTKNGMTKQSAITNY-KP 628

Query: 669 NRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R  K  +A+KL   DE+L+V       DI L T+ G  +R+PI+ I   +G  + GV+ 
Sbjct: 629 QRYSKSMMAIKL-KEDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPE-SGARTAGVKA 686

Query: 727 ISLAKGDQVISMAIVLHADADY 748
           I+L +GD VI   ++   D  +
Sbjct: 687 INLKQGDVVIGGVVLTPNDNKH 708



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 103/252 (40%), Gaps = 27/252 (10%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R     +   N   ++AMK    D  + ++     + +LL T  G  + 
Sbjct: 507 IVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTNKGNFIY 563

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +     +N           GD V  +A  L A  +    I  +   + Q+R +  
Sbjct: 564 RPVHELPDIRWKNL----------GDHVSHLASDLSAGEEIRSVIA-IDSFTEQKRFLFV 612

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV------------SEKGFGKRTSSY 815
               +T     ++ +     +    +KLKE  +L V            +  G+G R    
Sbjct: 613 TKNGMTKQSAITNYKPQRYSKSMMAIKLKEDELLNVYLIDGTEDIFLATRNGYGLRYPIA 672

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +   S     G++A ++ + + +   V + P NDN  I+L + +G+L ++  +E    SR
Sbjct: 673 EIPESGARTAGVKAINLKQGDVVIGGVVLTP-NDNKHILLATQRGSLKQMKASEFEPISR 731

Query: 876 ATKGVVIFSTAK 887
           A +G+++    K
Sbjct: 732 AKRGLLMLRELK 743


>gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 309/909 (33%), Positives = 481/909 (52%), Gaps = 133/909 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN  ++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYFFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 I  D     +E Q  AI+ L+L RLT      ++ E   L  +I     I+S  
Sbjct: 406 -----KISYD----FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +FI S  T+  +L F++ G V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFIQSAKTTQHLLMFTTFGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVVLISQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ I+L K D  +  A            IC M                     
Sbjct: 676 VGAKAAGVKAINL-KADDALQAAF-----------ICNMSSF------------------ 705

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI--------- 827
                                 ++LT  ++G  KR S  +   ++R+ +G+         
Sbjct: 706 ----------------------YLLT--QRGSLKRVSIDEIPATSRAKRGLQVLRELKNK 741

Query: 828 --RATDVSKINEIGALVAVFP--VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVI 882
             R      + E G +V +F   V+ NDQI+LV S+KGT+ +  + ++ ++ R + G  I
Sbjct: 742 PHRVFLAGAVAEQGFVVDLFSIEVDGNDQILLVQSNKGTIYQSRLQDLNLSERTSNGSFI 801

Query: 883 FSTAKDERV 891
             T  DE V
Sbjct: 802 SDTISDEEV 810


>gi|295836110|ref|ZP_06823043.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197695204|gb|EDY42137.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 822

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 291/751 (38%), Positives = 419/751 (55%), Gaps = 64/751 (8%)

Query: 8   SDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +DE + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+ 
Sbjct: 16  ADEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLR 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 76  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPP 135

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  + D + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVG
Sbjct: 136 AAMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I  P+ DLDALM+ + GPD PTG  I+G  GI++AYA GR
Sbjct: 196 MATNMAPHNLGEVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLGGIRDAYANGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 256 GSFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDH 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++     
Sbjct: 376 RFSVVRRRSEFRRTKRLNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEH---- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 432 ----------------------FSLSETQTQYILDTPLRRLTKFDRLELESERDRLNAEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +  TPRRT ++E          L + D+ C    
Sbjct: 470 EELTAILESDAELRKLVSSELAAVAKKHGTPRRTVLLESADSPVAAIPLQVADDPC---- 525

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P +     + G   R+       D +      +    V   +S G
Sbjct: 526 --RVLLSSTGVIARTPGT--EPLQEGSAKRA-----KHDVIRSAVPATARGEVGAVTSAG 576

Query: 597 FVYKEKVWRLP-----IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            + +  V  LP      G     G  +   L L   E +  +     DESS     +   
Sbjct: 577 RLLRLTVVDLPQLAEGAGPALVGGAPVAEFLRLEGDETLVCLCTL--DESSPG---LALG 631

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R  + D+   NR     + L   D I+ + E  T E D++  T   Q +RFP 
Sbjct: 632 TAQGVVKR-VVPDY-PANREELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFPA 689

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           SA+R   GR + GV G+ L +G +V+S  +V
Sbjct: 690 SAVRA-QGRPAGGVAGVKLTEGAKVLSFDVV 719


>gi|325687507|gb|EGD29528.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK72]
          Length = 816

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 275/741 (37%), Positives = 423/741 (57%), Gaps = 45/741 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 I  D     +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 406 -----KISYD----FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSPAKTIQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADY 748
           +L K D V++ A + + D+ Y
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY 705


>gi|257867818|ref|ZP_05647471.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257874146|ref|ZP_05653799.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
 gi|257801901|gb|EEV30804.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257808310|gb|EEV37132.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
          Length = 820

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/775 (36%), Positives = 450/775 (58%), Gaps = 52/775 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG + +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVIQHG-------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 414 ------------------FTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL--GYV 548
           L+  + LL +IK+EL  +K +  TPR T I   + +++ E  ++     V V+    GYV
Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVTQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L Q E I  +  + E +   N    V  +K+G +++ ++++F +
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEF-E 626

Query: 668 INRSGK----IAMKL-DSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             R+ K      MKL D  DE+++V     T+E D+ L + L   +R+ ++ + V  G  
Sbjct: 627 PWRTYKTRPMTIMKLKDETDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEVPV-VGPK 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + GV+ ++L   D +I+  +V    ++ D  I  +    A +R+++   +EIT L
Sbjct: 686 AAGVKAMNLKADDYLINGLLVY---SEGDTPIVLITQRGAAKRMLA---QEITQL 734


>gi|157150712|ref|YP_001450523.1| DNA topoisomerase IV subunit A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075506|gb|ABV10189.1| DNA topoisomerase IV, A subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 816

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 274/740 (37%), Positives = 426/740 (57%), Gaps = 45/740 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++
Sbjct: 304 KDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    V  L     + 
Sbjct: 518 RSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
            G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F       
Sbjct: 573 IGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADY 748
           L K D V++ A + + D+ Y
Sbjct: 687 LKK-DDVLAAAFIANTDSLY 705


>gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 310/906 (34%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHGN++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|170078543|ref|YP_001735181.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
 gi|169886212|gb|ACA99925.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
          Length = 845

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 316/910 (34%), Positives = 470/910 (51%), Gaps = 122/910 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 20  IIPTALHVEMEQSYMEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLSPDRPYRKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ QD+S R  L+ G GNFGS+D DPPAA RYTE RL
Sbjct: 80  RVVGDVLGKYHPHGDQSVYDALVRLVQDFSTRYPLLAGHGNFGSIDNDPPAAMRYTETRL 139

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +   +L  + +D VDF  N+DGS QEPVVL  + P +L+NG  GIAVGMATN+P HN
Sbjct: 140 SPVSFEAMLAQISEDIVDFTDNFDGSQQEPVVLPVQLPILLLNGSSGIAVGMATNMPPHN 199

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+ID+P+I+ + L  +I  PDFPTG  I+   G+++AY TGRG I +RG+ 
Sbjct: 200 LGEVVDGLIALIDDPEIEDEKLWAVIPAPDFPTGGEIVDLAGVRDAYRTGRGIIPMRGIV 259

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           H+E      K   D   +VVTE+PYQVNKAA +EKIA+LV + +I  I+D+RDESDRQG 
Sbjct: 260 HLEVLQVGRKRKRDVNALVVTELPYQVNKAAWIEKIADLVNDGKISGISDIRDESDRQGM 319

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A  + +L  LY+ T+LQS F   +++L   +P + +L  IL+ F+ FREE 
Sbjct: 320 RVVIELKRDAEPEKVLKLLYKKTALQSNFGAILLSLVNNQPRQLSLKAILQEFLEFREET 379

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V R+ +Y L +   R H + GL +A+ NLD V+ I+R + +  TA+++            
Sbjct: 380 VTRQYRYELEQKETRQHSVEGLLLALNNLDAVIEILRNAADGTTAKQQFQ---------- 429

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  SE Q+ AIL + + RLTGL R  +  E   L  EI +  
Sbjct: 430 ----------------AALGFSESQSDAILAMPMRRLTGLERQKLEQESTELATEIAKLN 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +LS R  LL  +K+EL S+K +   PRRTR+          D    E   VTV      
Sbjct: 474 KLLSDRHELLKALKRELRSLKRKFADPRRTRL---------PDVPSPEPEPVTVE---AE 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY--------- 599
              P +  + +R+  K         E+ V  L    T TS +  ++ G VY         
Sbjct: 522 PDTPAATPKKKRQSRK--------KEEPVLALLPQLTETSHVAIAASGGVYWGNDDAGLL 573

Query: 600 --KEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHGN 656
             +  +++  IG+     K L  I+  +QG+     I   P  E       +     H  
Sbjct: 574 DEEPTIFKAQIGT----QKKL--IVCTDQGKAFPVAIADLPYQEQRDKPQLIDLLPDHA- 626

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             R+      Q      +A                 E D+LL T  G+  R P   +  F
Sbjct: 627 -LRDDHQPITQFLLPDNLA-----------------EYDLLLLTAQGRIKRLPAIELESF 668

Query: 717 AGR--------NSVGVRGISLAKGDQVISMAI----VLHADADYDERICYMKHMSAQRRL 764
             R        +   ++     KG + +++A+    VLH   + D  I  M   S   + 
Sbjct: 669 TSRGLSLIKLKDKDTLKFACFVKGGEQVAIAVSSGRVLHLPVN-DHEIPVMGRTSQGNQA 727

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           +         L+ +  +   +  +R  EL L       +SE+G+GK+ ++   R+  R  
Sbjct: 728 L--------RLRFNEQIVACVPCQRHNELYL-------ISEEGYGKKLAASSLRLGKRGD 772

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIF 883
            G     V +      L+    V D  + +LV D +  L  +P ++  +  + + G  + 
Sbjct: 773 MG---NHVMRFESKTDLLLTLFVPDQQESLLVKDSQENLDLLPFSKFNLTEKDSPGQKLV 829

Query: 884 STAKDERVVS 893
             +  +R+V+
Sbjct: 830 KLSGGDRLVN 839


>gi|313897504|ref|ZP_07831047.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
 gi|312957874|gb|EFR39499.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
          Length = 831

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/740 (37%), Positives = 423/740 (57%), Gaps = 43/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    + S  + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K 
Sbjct: 10  EHHSSVISSPLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKG 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +R   I+ QGN GS+D DP AA RY
Sbjct: 70  YRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV + PN+D +  EP VL ARYPN+LVNG  GIA G ATNI
Sbjct: 130 TEARLGRISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E +D  V  I + D  LD LME I+GPDFPTG ++ G  GI+ A+ TG+G I+I
Sbjct: 190 PPHNLSEAIDAAVYRIQHADCSLDELMEYIQGPDFPTGGIVQGIEGIREAFETGKGRIII 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG ++IE+     +QIV+TEIPY+V K+ M++KI ++   K+I  I D+RDESDR G RV
Sbjct: 250 RGKANIEQKKT-VQQIVITEIPYEVIKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++K+ A+A VILN LY+ T LQ  ++ N+VA+   +P +  L  +L AF+  R EV+ 
Sbjct: 309 VVDMKKDANAQVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAPMLDAFIEHRREVIE 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L K  DR H+L GL  AV+ LDE++ +IR S +   ++R +M            
Sbjct: 369 RRSRFDLKKKEDRCHILEGLIKAVSVLDEIIALIRASKDKADSKRRIMD----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q  AI+ +RL RL+      +R E  +L  EI+E  DI
Sbjct: 418 ---------------AFAFSDAQAEAIVTMRLYRLSSTDITQLREEYAALLNEIEELHDI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           L +   L  ++ +EL  VK    TPR T I   + ++  +    I  E ++ T+S  GY 
Sbjct: 463 LENPKMLKKVMIRELNEVKKAFKTPRLTSIEHEIEEIVIDKLAMINSEQVMFTISRDGYF 522

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV +  Y A R    G     +++ D +     V+T   VLFF++ G      V+ +  
Sbjct: 523 KRVSMRSYGASRDDMTG-----LKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYDVEE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G  + + + ++  E+IT         S   N Y++  TK+G V++  + ++ ++
Sbjct: 578 SRWKEIGSHINSTIRISGEEKITDAFVL---RSFATNAYMISVTKNGLVKKTAVREY-EV 633

Query: 669 NRSGKIA--MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +R+ K    MKL   D ++        ++IL+ +K G   R+P+S I   + R S GV+ 
Sbjct: 634 SRNNKTMSNMKLLDGDAVVKTMVAYAYDEILIASKNGFVSRYPVSLIPETSPR-SKGVKA 692

Query: 727 ISLAKGDQVISMAIVLHADA 746
           ++L   D+++S A + H DA
Sbjct: 693 MNLVL-DEIVS-ACISHGDA 710


>gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 310/906 (34%), Positives = 489/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|125718047|ref|YP_001035180.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK36]
 gi|125497964|gb|ABN44630.1| ParC, putative [Streptococcus sanguinis SK36]
          Length = 816

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 299/886 (33%), Positives = 474/886 (53%), Gaps = 83/886 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ ++ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDSNTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R    +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFVATKLGQIKRVDRKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GTKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V+  A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLVAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +       FG+   + DF +     +                      
Sbjct: 732 QVLRELKTKPHRVFAAG-PVFGE---AVDFDLFTTEAEA--------------------- 766

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           N+   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 NEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|325689657|gb|EGD31661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK115]
          Length = 816

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/741 (36%), Positives = 426/741 (57%), Gaps = 45/741 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEGELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  ++V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANTIEIDTASLIVEEETYISVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADY 748
           +L K D V++ A + + D+ Y
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY 705


>gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680]
 gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 818

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 290/751 (38%), Positives = 419/751 (55%), Gaps = 65/751 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EE+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+  +
Sbjct: 12  DDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL R+AQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 71  RGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I  P  DL+ LM+ + GPD PTG  I+G TGI++AY +GRG+
Sbjct: 191 TNMPPHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGGRIVGLTGIRDAYESGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  
Sbjct: 251 FKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRAH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++R      
Sbjct: 371 EVVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIER------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQT+ IL+  L RLT   R ++ +E + L  EI E
Sbjct: 425 --------------------FSLSEVQTQYILDTPLRRLTRFDRIELESERDRLNGEIDE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L + D+ C      
Sbjct: 465 LTGILESDAELRKLVSGELAAVAKKFGTDRRTVLLESAGSTAATVPLQVADDPC------ 518

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G + R        +   G+          D +      +    V   +S G +
Sbjct: 519 RVLLSSTGLLARTANGAPFGEDADGR------RTKHDVIVSAVPATARGEVGAVTSSGRL 572

Query: 599 YKEKVWRLP-----IGSPQARGKALIN--ILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +  V  LP       +P   G A I+  + SL   E +  +     DESS     +   
Sbjct: 573 LRLNVIDLPRLPETTSAPNLSGGAPISEFLSSLEGDETVVCLTTL--DESSPG---LALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R  + D+   N+     + L   D I+ ++E  T E D++  T   Q +R+  
Sbjct: 628 TEQGVVKR-VVPDYPS-NKGELEVITLKDGDRIVGAIELSTGEEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           S +R   GR + G+ GI L  G +VIS   V
Sbjct: 686 SQVRP-QGRAAGGMAGIKLTDGAKVISFTAV 715


>gi|16800394|ref|NP_470662.1| DNA topoisomerase IV subunit A [Listeria innocua Clip11262]
 gi|16413799|emb|CAC96557.1| parC [Listeria innocua Clip11262]
          Length = 818

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/742 (36%), Positives = 442/742 (59%), Gaps = 44/742 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E   L  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISILEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609
                Y A        + + M++ D    +  +++  S++ F++ G F+Y+  V  LP  
Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLILFTNKGNFIYR-PVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     +S       +F TK+G  +++ ++++ + 
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIAI---DSFTEQKRFLFVTKNGMTKQSTITNY-KP 628

Query: 669 NRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R  K  +A+KL   DE+L+V       DI L T+ G  +R+PI+ I   +G  + GV+ 
Sbjct: 629 QRYSKSMMAIKL-KEDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPE-SGARTAGVKA 686

Query: 727 ISLAKGDQVISMAIVLHADADY 748
           I+L +GD VI   ++   D  +
Sbjct: 687 INLKQGDVVIGGVVLTPNDNKH 708



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 27/256 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK G V+R     +   N   ++AMK    D  + ++     + ++L T  G
Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLILFTNKG 559

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +  P+  +     +N           GD V  +A  L A  +    I  +   + Q+R
Sbjct: 560 NFIYRPVHELPDIRWKNL----------GDHVSHLASDLSAGEEIRSVIA-IDSFTEQKR 608

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV------------SEKGFGKR 811
            +      +T     ++ +     +    +KLKE  +L V            +  G+G R
Sbjct: 609 FLFVTKNGMTKQSTITNYKPQRYSKSMMAIKLKEDELLNVYLIDGTEDIFLATRNGYGLR 668

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               +   S     G++A ++ + + +   V + P NDN  I+L + +G+L ++  +E  
Sbjct: 669 YPIAEIPESGARTAGVKAINLKQGDVVIGGVVLTP-NDNKHILLATQRGSLKQMKASEFE 727

Query: 872 IASRATKGVVIFSTAK 887
             SRA +G+++    K
Sbjct: 728 PISRAKRGLLMLRELK 743


>gi|325978153|ref|YP_004287869.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178081|emb|CBZ48125.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 819

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 282/747 (37%), Positives = 423/747 (56%), Gaps = 61/747 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K 
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 DIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+ ++V R+K
Sbjct: 303 KKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKAIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE   L   I     I+   
Sbjct: 406 -KVSYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR T +  E   ++++    IV ED  V+V+  GY+KR  
Sbjct: 457 RTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFATKHGNVRRNKLS 663
                L +I   + GE ++ TI  F  DES         + +     ATK G ++R +  
Sbjct: 563 ---HELTDIRWKDIGEHLSQTITNFATDESVLYAEIVDDFGSQTYFAATKLGQIKRFERK 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +F       ++S K A   ++ D ++++     + D+++ T  G  + F I  + V  G 
Sbjct: 620 EFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD-DVMIVTHNGYALHFNIEEVPV-VGA 677

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA 746
            + GV+ I+L K D  ++ A V + D+
Sbjct: 678 KAAGVKAINL-KDDDFVASAFVANTDS 703


>gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 818

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 292/754 (38%), Positives = 422/754 (55%), Gaps = 72/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EEK I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +MG+  +
Sbjct: 12  DDFEEK-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 71  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + +DTVD++ NYDG  +EPVVL A YPN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I +P+ DLDALM  + GPD PTG  I+G  GIK+AYA+GRG+
Sbjct: 191 TNMPPHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGGRIVGLGGIKDAYASGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
             IR    IE  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR+ 
Sbjct: 251 FKIRATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDLTDREH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  LM+R      
Sbjct: 371 EVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMER------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+QT+ IL+  L RLT   R ++ +E + L  EI  
Sbjct: 425 --------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDRLNDEIAA 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L++ D+ C      
Sbjct: 465 LTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQVASVPLEVADDPC------ 518

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     P+ V    +R             D +      +    V   +S
Sbjct: 519 RVLLSSTGLLARTANADPIVVAEDTKR----------TKHDVIVSAVPATARGDVGAVTS 568

Query: 595 LGFVYKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP       +P   G A I+  L+L  GE +  +    E+ES      +
Sbjct: 569 TGRLLRLSVIDLPQLPDTHTAPTLSGGAQISEFLTLETGEELICLSTL-EEESPG----L 623

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T  G V+R  + D+   N+     + L   D I+ + +  T E D++  T   Q +R
Sbjct: 624 AIGTLQGVVKR-VVPDY-PPNKDEWEIISLKDGDRIVGATQLLTGEEDLVFITSDAQLLR 681

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +P + +R   GR + G+ GI L     V+S   V
Sbjct: 682 YPAAQVRP-QGRAAGGMTGIKLGADAAVLSFTAV 714


>gi|295396856|ref|ZP_06806984.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
 gi|294974882|gb|EFG50581.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
          Length = 820

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 282/739 (38%), Positives = 426/739 (57%), Gaps = 55/739 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G   +  + K A
Sbjct: 4   IQKLTLEEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILFAMFQEGNTSSSNFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G YHPHG++++Y+A+ RM+QDW  R +L+E  GN GS+DGD  AA RYTE RL
Sbjct: 64  KTVGNVIGNYHPHGDSSVYEAMVRMSQDWKNREVLVEMHGNNGSMDGDSAAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL KDTV+   N+D + +EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 124 SKIADELLRDLDKDTVEMILNFDDTAEEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D    +ID+P+  ++ LM+ + GPDFPTGA+I G+  +K AY +GRG +V+R   H
Sbjct: 184 GEIIDATTYLIDHPNATINKLMDFVPGPDFPTGAIIQGKEELKKAYTSGRGKVVVRSKHH 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G +E+IV+TEIPY+VNKA ++ ++ EL   + I  I ++RDE+DR G ++VIELK
Sbjct: 244 IETDRGGKEKIVITEIPYEVNKANLVRRMDELRLNRSIDGIQEVRDETDRNGLQIVIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI---LKAFVAFREEVVVRR 372
           + AS+D ILN  Y+ + LQ  ++ NMVA+N  +PE   L+GI   L A++  R E++ RR
Sbjct: 304 KDASSDAILNYFYKNSDLQINYNFNMVAINDQRPE---LVGIREALNAYIGHRYEIIRRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + LNKA+ R H++ GL  A++ LD+V+  IR S N   +R              +LI+
Sbjct: 361 TTFDLNKAQRRLHIVDGLVKAMSILDQVIATIRNSKNKSDSRY-------------NLIE 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             D              SE Q  AI+ L+L RLT      + NE   L  +I     ILS
Sbjct: 408 AFD-------------FSEAQAEAIVSLQLYRLTNTDVTALENERLQLNEDIAAYQAILS 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550
               L G +K EL ++K    + RRT I + + +  ++ +  I  ED+VV V+  GY+KR
Sbjct: 455 DDKVLYGRMKSELKAIKKAYASERRTEIQDEIQEVIVKKQLLIPEEDVVVVVTRGGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  ++A      G   V +RD D V  L  +ST   ++F ++ G    + V+ L    
Sbjct: 515 SSLRSFKAS-----GIEEVGLRDGDHVQFLEKMSTLDQLVFITNKGNYIFQPVYELQDIR 569

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-- 668
            +  G+ +   ++    E I  +  F  DE+S +NL  + A+  G +++  LS+F +   
Sbjct: 570 WKDLGEHVSQRIAFASDESIIGV--FKYDENSKDNL--LLASAAGMIKQTALSEFKEFRG 625

Query: 669 --NRSGKIAMKLDS-RDEILSV-----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             N+S  +AM L S  D+++ V      T   +  ++L T  G  +R+ I  I +   R 
Sbjct: 626 YKNKSS-LAMNLSSDTDQVIGVYRIDGATDQSQAQVILVTHFGFTLRYSIDEISIIGVR- 683

Query: 721 SVGVRGISLAKGDQVISMA 739
           + GV+ I+L + D V+ ++
Sbjct: 684 AKGVKSINLKQDDYVVGLS 702



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 109/253 (43%), Gaps = 21/253 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  T+ G ++R+ L  F     SG   + L   D +  +E  +  + ++  T  G  + 
Sbjct: 503 VVVVTRGGYIKRSSLRSF---KASGIEEVGLRDGDHVQFLEKMSTLDQLVFITNKGNYIF 559

Query: 708 FPISAIRVFAGRN---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  ++    ++    V  R I+ A  + +I    V   D +  + +         ++ 
Sbjct: 560 QPVYELQDIRWKDLGEHVSQR-IAFASDESIIG---VFKYDENSKDNLLLASAAGMIKQT 615

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKL----------KEQFILTVSEKGFGKRTSS 814
              + +E    KN SS+  N+S +  Q + +          + Q IL V+  GF  R S 
Sbjct: 616 ALSEFKEFRGYKNKSSLAMNLSSDTDQVIGVYRIDGATDQSQAQVIL-VTHFGFTLRYSI 674

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            +  I     KG+++ ++ + + +  L      +DN Q+++V+ +G + R+   EI +  
Sbjct: 675 DEISIIGVRAKGVKSINLKQDDYVVGLSYAAVPDDNLQLMMVTQRGHMKRLKWAEINVLG 734

Query: 875 RATKGVVIFSTAK 887
           RA +G+V     K
Sbjct: 735 RAKRGLVALKELK 747


>gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 818

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 293/761 (38%), Positives = 419/761 (55%), Gaps = 72/761 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     D+ EEK I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M 
Sbjct: 6   TKTPPPPDDFEEK-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           + DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPVVL A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G  GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLGGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YTAGRGSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM 
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMA 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 H--------------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDED 531
           L  EI     IL S + L  ++  EL +V  +  T RRT ++E          L++ D+ 
Sbjct: 459 LSGEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGAQIASVPLEVADDP 518

Query: 532 CIVREDMVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           C       V +S  G + R     P+ +    RR             D +      +   
Sbjct: 519 C------RVLLSSTGLLARTANAEPVEISEDARR----------TKHDVIVSAVAATARG 562

Query: 588 SVLFFSSLGFVYKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPEDES 641
            V   +S G + +  V  LP        P   G A I+  LSL   E +  +     DES
Sbjct: 563 DVGAVTSTGRMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEADEELVCLTTL--DES 620

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTT 700
           S     +   T  G V+R  + D+   N+     + L   D I+ + E  T E D++  T
Sbjct: 621 SPG---LAIGTLQGVVKR-VVPDY-PPNKDELEVISLKDGDRIVGATELRTGEEDLVFIT 675

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              Q +R+P +++R   GR + G+ G+ LA G +V+S   V
Sbjct: 676 SDAQLLRYPAASVRP-QGRPAGGMAGVKLAAGAEVLSFTAV 715


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 319/950 (33%), Positives = 490/950 (51%), Gaps = 98/950 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I   SI++ M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G  ++    +K Y
Sbjct: 10  KDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  GIAVG+ATNIP
Sbjct: 130 EARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGLATNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +DGC+A I+N +I    LM  I+GPD PTG +++G   + +AY  G G + +R
Sbjct: 190 PHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILIGEKALLSAYEKGEGRVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             ++IEK   DR  IV+ E PY+ NK+ ML+ I+E+  +K+    +  I D+RDESDR G
Sbjct: 250 AKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSIYDIRDESDRNG 309

Query: 308 YRVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIELK+ A    A+ +L  L++ T LQ   S NMVA+   KP+   L  ILK +V  
Sbjct: 310 IRAVIELKKSADMEEAERVLKYLFKKTELQCNLSFNMVAIAEGKPKTLGLKSILKYYVEH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++V+ RRTK  L  A+ R H++ G   A+  +DE+++ IR S + + +   L+      
Sbjct: 370 QKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENLV------ 423

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                               G    S  Q  AI+EL L +LTGL       E   L   I
Sbjct: 424 --------------------GKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYRELQRRI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
                IL+S   L  +IK+EL  VK+     RRT I+    +  +D+  ED IV E++V+
Sbjct: 464 NALTKILNSEKELFKVIKKELNEVKENYGDERRTNIIHDDEKAKIDI--EDIIVDENVVI 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVS+ GY+KRV    Y   +R       +  R+ DF   +   +T  +++ F+  G +Y+
Sbjct: 522 TVSNDGYIKRVSEKYY---KRINPKIEDIEYREGDFNKFILEGNTKDNLIMFTDAGNLYQ 578

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            ++  +P    + +GK L  ++     E+   I  +  DE + N  +  F T  G +++ 
Sbjct: 579 LRIVNIPEMKWKEKGKRLDELIKTLDLEKEKFIEFYVIDELNSNKNFFFF-TNRGMIKKT 637

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFA 717
            L  F + N S  +A+KL   ++++ V+      +E  I + +K G  + F +S  R+  
Sbjct: 638 SLDKF-KTNYSKLLALKLKENEKLIDVKLNYNNRKEQYIKIQSKNG--LEFTVSEPRIEN 694

Query: 718 G-RNSVGVRGISLAKGDQVISMAIV-------------------LHADADYDE-RICYMK 756
             RN +G +  +L+  D+V ++                      +    +Y   + CY  
Sbjct: 695 NDRNVMGNQIFNLSSQDEVKNICYTDEFNIKNFAVNINSKGKIKISKKINYKNFKGCYAN 754

Query: 757 HMSA-------------QRRLISGDTEEITSLKN-----DSSVEGNISEERCQELKLKEQ 798
            +S                 LI      +  L N     + + E  IS     E   K  
Sbjct: 755 SLSNIVIFGNKGNVFLFPAYLIENIDNGLIKLSNLIDEFNENEEDIISIFSISEFDDKSS 814

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN---DQIIL 855
           F   +SE+G+ K+T   +F       KG +       N+   L+ V  +NDN     I+L
Sbjct: 815 FYF-ISEEGYVKKTMLSEFNGMYSYTKGYKLK-----NKDDKLINVL-LNDNTFKTDILL 867

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++ K   IR   N I    +   GV   S  +D++V+  E I + + +D+
Sbjct: 868 ITKKDMRIRFESNSINPMGKIASGVTGISLNEDDKVIFGEFIYQEDNIDK 917



 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 12/131 (9%)

Query: 628 ERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           E I +I    E  D+SS+      F ++ G V++  LS+F  +    K   KL ++D+ L
Sbjct: 798 EDIISIFSISEFDDKSSF-----YFISEEGYVKKTMLSEFNGMYSYTK-GYKLKNKDDKL 851

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
               +   T + DILL TK    +RF  ++I    G+ + GV GISL + D+VI    + 
Sbjct: 852 INVLLNDNTFKTDILLITKKDMRIRFESNSINPM-GKIASGVTGISLNEDDKVIFGEFIY 910

Query: 743 HADADYDERIC 753
             D     +IC
Sbjct: 911 QEDNIDKIKIC 921


>gi|306825060|ref|ZP_07458402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432496|gb|EFM35470.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 826

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 302/897 (33%), Positives = 483/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL  + K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQYIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  I+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIQKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+ 
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVSILSSYIAHRREVILARSH 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +      I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKTAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +     +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  + +  T   +L F+SLG V    ++R PI    
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRLIFVQVAKTTQHLLMFTSLGNV----IYR-PIHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVER 619

Query: 663 SDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G
Sbjct: 620 KEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLVSRNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L   D+ +  A + +  + Y         +  QR    G  + ++  +  
Sbjct: 678 AKAAGVKAMNLKAEDE-LQAAFICNTSSFY---------LLTQR----GSLKRVSIDEIP 723

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +     V+E+GF                           
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF--------------------------- 756

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +G L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 --VGDLFST-EVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|302023679|ref|ZP_07248890.1| DNA topoisomerase IV subunit A [Streptococcus suis 05HAS68]
 gi|330832704|ref|YP_004401529.1| topoisomerase IV subunit A [Streptococcus suis ST3]
 gi|329306927|gb|AEB81343.1| topoisomerase IV subunit A [Streptococcus suis ST3]
          Length = 817

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/733 (36%), Positives = 414/733 (56%), Gaps = 44/733 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R   
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRC 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K
Sbjct: 303 KKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE  +L  +I+    I+   
Sbjct: 406 -KVSYD--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  L    T   +L F++LG V    V  L     +
Sbjct: 517 PRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWK 571

Query: 613 ARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI--- 668
             G+ L   +++ +  E I     F E   ++        T++G ++R +  +F      
Sbjct: 572 DIGEHLSQTLMNFDTSEEII----FAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTY 627

Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   D+ D +++V      +DI+L T+ G  +RF I  + +  G  + GV+ +
Sbjct: 628 KSKSTKYAKLKDAEDVVITVSPVVL-DDIMLMTEKGYALRFNIEEVPII-GAKAAGVKAV 685

Query: 728 SLAKGDQVISMAI 740
           +L  GD V++  I
Sbjct: 686 NLKDGDVVVAAFI 698


>gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           11379]
 gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
          Length = 818

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 289/754 (38%), Positives = 414/754 (54%), Gaps = 72/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EEK I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +MG+  +
Sbjct: 12  DDFEEK-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 71  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + +DTVDF+ NYDG  +EP VL A YPN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G TGIK+AY  GRGS
Sbjct: 191 TNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLTGIKDAYTAGRGS 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  
Sbjct: 251 FKIRATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM        
Sbjct: 371 EVVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMAH------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+QT+ IL+  L RLT   R ++ +E + L  EI  
Sbjct: 425 --------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDKLNGEIDA 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L++ D+ C      
Sbjct: 465 LTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQIASVPLEVADDPC------ 518

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     P+ +    RR             D +      +    V   +S
Sbjct: 519 RVLLSSTGLLARTANAEPVEISEDARR----------TKHDVIVSAVAATARGDVGAVTS 568

Query: 595 LGFVYKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP        P   G A I+  L+L   E +  +    ED        +
Sbjct: 569 TGRLLRLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEADEELICLTTLAEDSPG-----L 623

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T  G V+R  + D+   N+     + L   D I+ + E  T E D++  T   Q +R
Sbjct: 624 AIGTLQGVVKR-VVPDY-PANKDELEVITLKDGDRIVGATELRTGEEDLVFITSDAQLLR 681

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +P  ++R   GR + G+ G+ LA G +V+S   V
Sbjct: 682 YPAGSVRP-QGRPAGGMAGVKLAAGAEVLSFTAV 714


>gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 826

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 310/906 (34%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  +S  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILSTSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
 gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
          Length = 814

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 303/882 (34%), Positives = 475/882 (53%), Gaps = 113/882 (12%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A+  L                    SY          +E
Sbjct: 368 RVISILDEVIALIRASENKADAKENL------------------KVSYE--------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F++LG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTTLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDF----IQINRSGK 673
           E ++ TI  F  +E          +++    F AT+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYAEVVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV-VGAKATGVKAMNL-KAD 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +  A + +  + Y         +  QR    G  + ++  +  ++       +  +EL
Sbjct: 680 DALQAAFICNTSSFY---------LLTQR----GSLKRVSIEEIPATSRAKRGLQVLREL 726

Query: 794 KLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           K K   +     V+E+GF                              G L +   V +N
Sbjct: 727 KNKPHRVFLAGAVAEQGF-----------------------------FGDLFST-EVEEN 756

Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           DQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 DQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|325694457|gb|EGD36366.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK150]
          Length = 816

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 301/887 (33%), Positives = 477/887 (53%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +  V+   +G+   + DF +     +                      
Sbjct: 732 QVLRELKAKPHRVF-VAGPVYGE---AVDFDLFTTEAEA--------------------- 766

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 -SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|73916826|gb|AAZ93281.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916834|gb|AAZ93285.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916902|gb|AAZ93319.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 489/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E+         +++    F AT+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 818

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 292/761 (38%), Positives = 419/761 (55%), Gaps = 72/761 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     D+ EEK I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M 
Sbjct: 6   TKTPPPPDDFEEK-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           + DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPVVL A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G  GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLGGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YTAGRGSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM 
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMA 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 H--------------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDED 531
           L  EI     IL S + L  ++  EL +V  +  T RRT ++E          L++ D+ 
Sbjct: 459 LSGEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGAQIASVPLEVADDP 518

Query: 532 CIVREDMVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           C       V +S  G + R     P+ +    RR             D +      +   
Sbjct: 519 C------RVLLSSTGLLARTANAEPVEISEDARR----------TKHDVIVSAVAATARG 562

Query: 588 SVLFFSSLGFVYKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPEDES 641
            V   +S G + +  V  LP        P   G A I+  LSL   E +  +     DES
Sbjct: 563 DVGAVTSTGRMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEADEELVCLTTL--DES 620

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTT 700
           S     +   T  G V+R  + D+   N+     + L   D ++ + E  T E D++  T
Sbjct: 621 SPG---LAIGTLQGVVKR-VVPDY-PPNKDELEVISLKDGDRVVGATELRTGEEDLVFIT 675

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              Q +R+P +++R   GR + G+ G+ LA G +V+S   V
Sbjct: 676 SDAQLLRYPAASVRP-QGRPAGGMAGVKLAAGAEVLSFTAV 715


>gi|288905179|ref|YP_003430401.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
 gi|288731905|emb|CBI13470.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
          Length = 819

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 282/747 (37%), Positives = 422/747 (56%), Gaps = 61/747 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K 
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 DIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A    +LN L +YT LQ  ++ NMVA++ Y P +  ++ +L +++A R+E++V R+K
Sbjct: 303 KKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIVPMLTSYIAHRKEIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE   L   I     I+   
Sbjct: 406 -KVSYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR T +  E   ++++    IV ED  V+V+  GY+KR  
Sbjct: 457 RTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L +I   + GE ++ TI  F  DE          + +     ATK G ++R +  
Sbjct: 563 ---HELTDIRWKDIGEHLSQTITNFATDEYILYAEIVDDFGSQTYFAATKLGQIKRFERK 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +F       ++S K A   ++ D ++++     + D+++ T  G  + F I  + V  G 
Sbjct: 620 EFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD-DVMIVTHNGYALHFNIEEVPV-VGA 677

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA 746
            + GV+ I+L   D V S A V + D+
Sbjct: 678 KAAGVKAINLKDNDFVAS-AFVANTDS 703


>gi|324992853|gb|EGC24773.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK405]
 gi|327462160|gb|EGF08487.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1]
          Length = 816

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 301/886 (33%), Positives = 475/886 (53%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P   +  LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++
Sbjct: 304 KDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    V  L     + 
Sbjct: 518 RSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
            G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F       
Sbjct: 573 IGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   +
Sbjct: 687 LKK-DDVLAAAFIANTDSLY-----LLTQRGSIKRMAVADI-PVTS-------RANRGLQ 732

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +       FG+   + DF +     +                       
Sbjct: 733 VLRELKTKPHRVFAAGPV-FGE---AVDFDLFTTEAEA---------------------- 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
 gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 274/728 (37%), Positives = 417/728 (57%), Gaps = 43/728 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+E  +    + + M   +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++ +
Sbjct: 10  EKEPSLVISPLEEIMGERFGRYSKYIIQERALPDARDGLKPVQRRILYAMFHDGNTFDHQ 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ RM+QDW +R+ LI+  GN GS+D DP AA RY
Sbjct: 70  HRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSIDDDPAAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL+D+ KDTV F PN+D +  EP VL AR+P +LVNG  GIA G ATNI
Sbjct: 130 TEARLAKIAGTLLEDIDKDTVLFAPNFDDTENEPTVLPARFPVLLVNGATGIAAGYATNI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  +  +  P   L+ LMEI+ GPDFPTG +++G+ GI +A+ TG+G +VI
Sbjct: 190 PPHNLSEVIDAAIYRMQRPKCSLEELMEILPGPDFPTGGIVMGKKGIVDAFTTGKGRVVI 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I  T     QI++ EIPY+V K++M+ K+ ++   + I  I D+RDE+DR G R+
Sbjct: 250 RARTEI-VTGKTCNQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIRDETDRTGLRI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++K+ A  +VILN  Y+ T LQ  +S NMV++   +P +  LIG+L AF+A REEVV+
Sbjct: 309 VIDVKKDADPNVILNYFYKNTDLQIYYSYNMVSIVNKRPVQMGLIGMLDAFIAHREEVVL 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++YL NK  +R H+L GL  AV+ +DEV+ +IR S +   A+R L +           
Sbjct: 369 RRSRYLYNKMEERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTE----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   SE Q  AI+ LRL RLT      +R E   L  E++    I
Sbjct: 418 ---------------SFGFSETQAEAIVTLRLYRLTSTDIVALREEFAQLVNEMEMLKTI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L S + L  ++ +EL  +K E   PRR+ I   VE ++ ++    I  E +++T S  GY
Sbjct: 463 LESETVLKSVLIKELREIKKEYADPRRSEIQAEVEEIV-IDKTAMIPNERVMITASRDGY 521

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKRV L  Y A      G     +++ D +     V T  ++L F+S G      V+++ 
Sbjct: 522 VKRVSLRSYGASDNAMTG-----LKEGDVLVGQLEVDTLDTLLLFTSKGNYAHLPVYQID 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G  L   +S++  ++I   +   ++ SS+   ++V  ++ G V++  +S + Q
Sbjct: 577 EAKWKDVGSHLNKYVSIDGDDKIINAI-VVKNFSSY--AWIVTVSRRGQVKKTPISQW-Q 632

Query: 668 INRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + R+ K+  AM L   DE++         D+++ ++ G   R+  S +    G  S GV+
Sbjct: 633 VQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRSGWISRYS-SDLVPANGTKSQGVK 691

Query: 726 GISLAKGD 733
            ++LAK D
Sbjct: 692 ALNLAKDD 699


>gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA]
 gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031]
 gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA]
 gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031]
          Length = 826

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|229031252|ref|ZP_04187258.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
 gi|228730010|gb|EEL80984.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
          Length = 807

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 295/829 (35%), Positives = 464/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+  
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV +R++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTKRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LD+V+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLMKALSILDQVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q+ AI+ L+L RLT      +  E + L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQSEAIVSLQLYRLTNTDITALEKEADELSTKIAELQAILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + N++SL + E I   T++P  E+E      ++VF TK+G +++ +L+ + +Q      
Sbjct: 578 HVANLVSLERDEMIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATYGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ + D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGEKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|253753461|ref|YP_003026602.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|253755713|ref|YP_003028853.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|226237529|dbj|BAH47277.1| topoisomerase IV subunit A [Streptococcus suis]
 gi|251818177|emb|CAZ55975.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|251819707|emb|CAR45533.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|292558209|gb|ADE31210.1| topoisomerase IV, subunit A [Streptococcus suis GZ1]
 gi|319757994|gb|ADV69936.1| topoisomerase IV subunit A [Streptococcus suis JS14]
          Length = 817

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 277/755 (36%), Positives = 425/755 (56%), Gaps = 73/755 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R   
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRC 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K
Sbjct: 303 KKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE  +L  +I+    I+   
Sbjct: 406 -KISYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  L    T   +L F++LG V    ++R P+    
Sbjct: 517 PRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNV----IYR-PVHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFA--------------TKHGNV 657
                L +I   + GE ++ T+M F  +E       ++FA              TK+G +
Sbjct: 565 -----LTDIRWKDIGEHLSQTLMNFDTNEE------IIFAELVENFEEGTYFAVTKYGQI 613

Query: 658 RRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +R +  +F       ++S K A   D+ D +++V      +DI+L T+ G  +RF I  +
Sbjct: 614 KRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVL-DDIMLMTEKGYALRFNIEEV 672

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
            +  G  + GV+ ++L K + V++ A + +  + Y
Sbjct: 673 PII-GAKAAGVKAVNL-KDEDVVAAAFISNTSSVY 705


>gi|306833367|ref|ZP_07466494.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
 gi|304424137|gb|EFM27276.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
          Length = 819

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/747 (37%), Positives = 422/747 (56%), Gaps = 61/747 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K 
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  LD LM  + GPDFPTGA+I G+ GI+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMAFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 DIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+E++V R+K
Sbjct: 303 KKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKEIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE   L   I     I+   
Sbjct: 406 -KVSYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR T +  E   ++++    IV ED  V+V+  GY+KR  
Sbjct: 457 RTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L +I   + GE ++ TI  F  DE          + +     ATK G ++R +  
Sbjct: 563 ---HELTDIRWKDIGEHLSQTITNFATDEYVLYAEIVDDFGSQTYFAATKLGQIKRFERK 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +F       ++S K A   ++ D ++++     + D+++ T  G  + F I  + V  G 
Sbjct: 620 EFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD-DVMIVTHNGYALHFNIEEVPV-VGA 677

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA 746
            + GV+ I+L K D  ++ A V + D+
Sbjct: 678 KAAGVKAINL-KDDDFVASAFVANTDS 703


>gi|325696554|gb|EGD38444.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK160]
          Length = 816

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 300/887 (33%), Positives = 476/887 (53%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNAFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+++++ R++
Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKDIILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      +  E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    V  L     +
Sbjct: 517 PRSFSASTIEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQ 667
             G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F      
Sbjct: 572 EIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I
Sbjct: 628 KSKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   
Sbjct: 686 NLKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +       +G+   + DF +     +                      
Sbjct: 732 QVLRELKAKPHRVFAAG-PVYGE---AVDFDLFTTEAEA--------------------- 766

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 -SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
 gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 304/897 (33%), Positives = 480/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKEANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +    A  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDAYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    ++R PI    
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTSLGNV----IYR-PIHE-- 567

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 568 -----LADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDATTYFAATRLGQIKRVER 622

Query: 663 SDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL +  G  +RF I  + V  G
Sbjct: 623 KEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLISLNGYALRFNIEEVPV-VG 680

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K D  +  A + +  + Y         +  QR    G  + ++  +  
Sbjct: 681 AKAAGVKAMNL-KEDDTLQSAFICNTSSFY---------LLTQR----GSLKRVSIDEIP 726

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +     V+E+GF                           
Sbjct: 727 ATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF--------------------------- 759

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +G L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 760 --VGDLFST-EVEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813


>gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
 gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
          Length = 826

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|113953878|ref|YP_729244.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113881229|gb|ABI46187.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
          Length = 820

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/517 (47%), Positives = 343/517 (66%), Gaps = 32/517 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + S+++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERVQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL + +H  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLARISHEGLLDEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++ NPD+  + ++++I GPDFPTG  +L  +G++  Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVQNPDLSENEVLKLIPGPDFPTGGEVLLGSGVRETYLRGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE     K    R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHIEEVHPGKGKHRRNAVIVTELPYQLSKAGWIEKLAEHVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R TSLQS F   ++AL   +P++ TL  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPETVLTDLQRRTSLQSNFGAILLALVDGRPQQLTLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+A+L +V+ +I+ + +   AR  LM        
Sbjct: 363 LTIIRRTNHALRKTEDRLEVVEGLTTALASLQQVIAMIQEARDAAKARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  A+L + L RLTGL ++ +R E + L  E + 
Sbjct: 417 --------------------FDLSERQADAVLAMPLRRLTGLEQESLRKEADDLRKERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
              +L +R +LL  + QEL  +K    TPRRTR+VEG
Sbjct: 457 LTLLLENRDQLLDALIQELRQLKKRFATPRRTRLVEG 493


>gi|324994507|gb|EGC26420.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK678]
          Length = 816

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 301/886 (33%), Positives = 473/886 (53%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P   +  LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++
Sbjct: 304 KDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I     I+    
Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +      ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    V  L     + 
Sbjct: 518 RSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQI 668
            G+ L   +S  +  E +     + E   S+       ATK G ++R +  +F       
Sbjct: 573 IGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYK 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++S K A KL + D+ +      + +D++L TK G  +RF I  + V  G  + GV+ I+
Sbjct: 629 SKSLKFA-KLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVI-GAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+ Y      +    + +R+   D   +TS         N   +
Sbjct: 687 LKK-DDVLAAAFIANTDSLY-----LLTQRGSLKRMAVADI-PVTS-------RANRGLQ 732

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +       FG+   + DF +     +                       
Sbjct: 733 VLRELKTKPHRVFAAGPV-FGE---AVDFDLFTTEAEA---------------------- 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              QI+ V S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 767 SEKQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 816

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 288/754 (38%), Positives = 418/754 (55%), Gaps = 72/754 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ EEK I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +MG+  +
Sbjct: 12  DDFEEK-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
           + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA
Sbjct: 71  RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+  A   + + + +DTVDF+ NYDG  QEPVVL A YPN+LVNG  GIAVGMA
Sbjct: 131 MRYTECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G  GIK+AYA GRG+
Sbjct: 191 TNMPPHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGGRIVGLGGIKDAYAAGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             IR    IE  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  
Sbjct: 251 FKIRATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRAH 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+  LM+R      
Sbjct: 371 DVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMER------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+QT+ IL+  L RLT   R ++  E + L  EI E
Sbjct: 425 --------------------FSLSEIQTQYILDTPLRRLTRFDRIELETERDKLSQEIAE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538
              IL S + L  ++  EL +V  +  T RRT ++E          L++ D+ C      
Sbjct: 465 LTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQVASVPLEVADDPC------ 518

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     P+      RR             D +      +    V   +S
Sbjct: 519 QVLLSSTGLLARTANAEPIEQTEDARR----------TKHDAIVSAVPATARGDVGAVTS 568

Query: 595 LGFVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V  LP       +P   G A +   L+L   E++  +    E+      L +
Sbjct: 569 AGRLLRLSVIDLPQLPDTHAAPNLSGGAPVAEFLTLEADEQLICLTTLDEEA-----LGL 623

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707
              T  G V+R  + D+   N+     + L   D I+ + +  T E D++  T   Q +R
Sbjct: 624 AIGTLQGVVKR-VVPDY-PANKDELEVITLKDGDRIVGATQLRTGEEDLVFITSDAQLLR 681

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +P +++R   GR + G+ G+ L +G  V+S   V
Sbjct: 682 YPAASVRP-QGRPAGGMAGVKLTEGATVLSFTAV 714


>gi|306831249|ref|ZP_07464409.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426485|gb|EFM29597.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 819

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 281/747 (37%), Positives = 422/747 (56%), Gaps = 61/747 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K 
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 DIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+ ++V R+K
Sbjct: 303 KKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKAIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE   L   I     I+   
Sbjct: 406 -KVSYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR T +  E   ++++    IV ED  V+V+  GY+KR  
Sbjct: 457 RTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L +I   + GE ++ TI  F  DE          + +     ATK G ++R +  
Sbjct: 563 ---HELTDIRWKDIGEHLSQTITNFATDEYVLYAEIVDDFGSQTYFAATKLGQIKRFERK 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +F       ++S K A   ++ D ++++     + D+++ T  G  + F I  + V  G 
Sbjct: 620 EFTPWRTYKSKSVKYAKLKNADDSVVTISPIALD-DVMIVTHNGYALHFNIEEVPV-VGA 677

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA 746
            + GV+ I+L K D  ++ A V + D+
Sbjct: 678 KAAGVKAINL-KDDDFVASAFVANTDS 703


>gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585]
 gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585]
 gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 826

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|73916844|gb|AAZ93290.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/905 (34%), Positives = 487/905 (53%), Gaps = 127/905 (14%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 241 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++
Sbjct: 301 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 361 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      ++ E   L  +I     I+    
Sbjct: 408 -------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR   
Sbjct: 455 TMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSP 611
             + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI   
Sbjct: 515 RSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE- 561

Query: 612 QARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNK 661
                 L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R +
Sbjct: 562 ------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVE 615

Query: 662 LSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
             +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V  
Sbjct: 616 RKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-V 673

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK 
Sbjct: 674 GAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLKR 713

Query: 778 DSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGI 827
             S+E  ++  R +       ELK K   +     V+E+GF                   
Sbjct: 714 -VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------- 753

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                     +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T 
Sbjct: 754 ----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTI 802

Query: 887 KDERV 891
            DE V
Sbjct: 803 SDEEV 807


>gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 823

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 715

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 716 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 757 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 804

Query: 886 AKDERV 891
             DE V
Sbjct: 805 ISDEEV 810


>gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|73916866|gb|AAZ93301.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E+         +++    F AT+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 817

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 275/751 (36%), Positives = 426/751 (56%), Gaps = 68/751 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G   +K 
Sbjct: 3   DNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW LR+ LIE  GN GS+D DPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +L+D+ K+TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  +  I +P+  L+ LME ++GPDFPTG +I G  G+K AY TG+G +V+
Sbjct: 183 PPHNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGGIIQGINGLKQAYRTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E+  G+++QI+V+EIPY+VNKA +++KI E+   K++  IA++RDESDR G  +
Sbjct: 243 RSKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDESDRDGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+   A  ILN L++ T LQ  ++ NMVA+N  +PER  L  I++A+V F++EV+ 
Sbjct: 303 AIELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLRPERMGLKEIIQAYVDFQKEVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTK+ L KA DR H++ GL  A++ LD+V++ IR S + + A++ L+            
Sbjct: 363 KRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLIT----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   SE Q  AI+ L+L RLT     ++++E  +L   I E  +I
Sbjct: 412 ---------------SFDFSERQAEAIVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548
           L++ + L  ++  EL  VK    TPR + I E + ++  +  I    E ++V VS  GY+
Sbjct: 457 LNNPNELSKVLSAELRQVKKRYATPRLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYL 516

Query: 549 KRVPLSVYR--AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           KR  L  Y+  A+  G K     V + E    D  I+ T+   L +  +  +  E  W+ 
Sbjct: 517 KRSSLRSYKASAEEDGLKEGDFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIM-ETRWK- 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---------VFATKHGNV 657
                             + GE I+  +   +DE       V         + AT  G +
Sbjct: 575 ------------------DTGEHISQAIGLADDEIILKAFDVKNFDEPVSFLIATSDGYI 616

Query: 658 RRNKLSDFI---QINRSGKIAMKLDSRD-EILSVETCTQEN---DILLTTKLGQCVRFPI 710
           +R  L DF       +   + +KL + D ++++V   T ++    ILL T+ G  +R+ +
Sbjct: 617 KRTSLKDFKPGRTYRKKAAVYIKLKAADAKVVNVAKLTSQSTKETILLATRNGYGLRYDL 676

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             +     R + GV+ + L + D++ +  +V
Sbjct: 677 IEVPEVGPR-AAGVKSMDL-REDEIANFVLV 705



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 11/127 (8%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N+++   Q  K   + IL  +  G+G R    +         G+++ D+ + +EI   V 
Sbjct: 649 NVAKLTSQSTK---ETILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLRE-DEIANFVL 704

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V   ND+DQI L++++G+  ++ V+EI + SRA +GV I    K E      R+ + E+V
Sbjct: 705 V---NDHDQIGLITNRGSFKKMKVSEISVTSRARRGVQILRELKKE----PHRVADIEVV 757

Query: 904 DEAESTE 910
           +  E+ E
Sbjct: 758 EPGEAFE 764


>gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|229174258|ref|ZP_04301791.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
 gi|228609115|gb|EEK66404.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
          Length = 807

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 287/763 (37%), Positives = 441/763 (57%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+  
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDEVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q+ AI+ L+L RLT      +  E + L  +I E   IL S  RLL
Sbjct: 409 TKFG------FTEAQSEAIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + N++SL + E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANLVSLERDEMIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   D ++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+ D D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 301/909 (33%), Positives = 489/909 (53%), Gaps = 90/909 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I   SI++ M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G  ++    +K Y
Sbjct: 10  KDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  +L D+ K+ VD   NY  +  EP VL AR+PN+LVNG  GIAVG+ATNIP
Sbjct: 130 EARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGLATNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +DGC+A IDN DI    LM  I+GPD PTG +++G   + +AY  G G + +R
Sbjct: 190 PHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILIGEKALLSAYEKGEGRVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             ++IEK   DR  IV+TE PY+ NK+ ML+ I+E+  +K+    +  I+D+RDESDR G
Sbjct: 250 AKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALDAISDIRDESDRNG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIELK+ A+   A+ +L  L++ T LQ   S NMVA+   KP+   L  ILK +V  
Sbjct: 310 IRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIADGKPKTLGLKAILKYYVEH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV+RRTK  L  A  R H++ G   A+  +DE+++ IR S + + +   L+ +    
Sbjct: 370 QKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENLVNK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    S  Q  AI+EL L +LTGL       E   L   I
Sbjct: 426 ----------------------FGFSREQAEAIVELMLYKLTGLEIKVFEKEYKELQRRI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
                IL+S   L  +IK+EL  VK+     RRT I+    +  +D+  E+ I+ ED+++
Sbjct: 464 NALTKILNSEKELFKVIKKELNEVKENYGDERRTNIIHDDEKAKIDI--EELILDEDVII 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GY+KRV    Y   +R       +  R+ DF   +   +T  S++ F+  G +Y+
Sbjct: 522 TISNEGYIKRVSEKYY---KRINPKVEDIEYREGDFNKAILEGNTKYSLIIFTDEGNLYQ 578

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            ++  +     + +G+ L N++     E+   I  +  +E + +  ++ F+ + G ++++
Sbjct: 579 LRIVNIAEMKWKEKGERLDNLIKTLDLEKEKLINFYVIEELNSHKNFIFFSDR-GMMKKS 637

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRV-F 716
            L  F + N S  +A+KL   +++++V+      +E  I + TK G  ++F +   R+  
Sbjct: 638 SLDKF-KTNYSKLLALKLKENEKLINVKLADNNRKEQYIKVQTKNG--LKFTVGEPRLEN 694

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE---EIT 773
           + RN +G +  +L+  D+V              + I Y      +   ++ + +   +++
Sbjct: 695 SDRNVMGNQLFNLSAEDKV--------------KEISYTDEFEIKNFAVNINNKGKIKVS 740

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRAT 830
              N  + +G      C    L    I       FG + S +    + I N    G++ +
Sbjct: 741 KKVNYKNFKG------CYANSLSNIII-------FGDKGSVFLLPAYLIENIDNNGVKLS 787

Query: 831 D-VSKINE----IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           + + + NE    I  + A+   ND +    +S+ G + +  +NE +     TKG  +   
Sbjct: 788 NLIDEFNENEESIVNIFAITEFNDEESFYFISENGYVKKTMLNEFQGNYSYTKGYKL--K 845

Query: 886 AKDERVVSV 894
            KD+++++V
Sbjct: 846 DKDDKLINV 854



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 17/166 (10%)

Query: 625 NQGERITTIM-PFPEDESSWNNLYVV----------FATKHGNVRRNKLSDFIQINRSGK 673
           N G +++ ++  F E+E S  N++ +          F +++G V++  L++F Q N S  
Sbjct: 781 NNGVKLSNLIDEFNENEESIVNIFAITEFNDEESFYFISENGYVKKTMLNEF-QGNYSYT 839

Query: 674 IAMKL-DSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              KL D  D++++V  +    E DILL TK    +RF   +I    G+ + GV GISL+
Sbjct: 840 KGYKLKDKDDKLINVLKKDNKLEKDILLITKKDMRIRFDSDSINPM-GKIASGVTGISLS 898

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + D+VI    +   D D D+   Y +  +    +   D+EE+  LK
Sbjct: 899 EDDKVIFGEFIYLEDND-DKIKVYGETKNKLEVMYEDDSEEVVILK 943


>gi|229829025|ref|ZP_04455094.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
 gi|229792188|gb|EEP28302.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
          Length = 747

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 287/732 (39%), Positives = 413/732 (56%), Gaps = 31/732 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K A
Sbjct: 9   IIETEYSDVMQKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+A+IYDAL  M+QD+   + L++G GNFGS++GD  AA RYTE RL
Sbjct: 69  RIVGDTMGKYHPHGDASIYDALVVMSQDFKKSVPLVDGHGNFGSIEGDGAAAMRYTEARL 128

Query: 136 -QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            Q A    L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IP HN
Sbjct: 129 SQIAQEAYLADLDKDLVDFIPNFDETEKEPEVLPVRIPNLLVNGADGIAVGMATSIPQHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG +A + NP+I+   +ME I GPDFPTG ++  R  +   Y+TG G I IRG +
Sbjct: 189 LGEVIDGVIAYMKNPEINTRQMMEYIPGPDFPTGGIVTNRDELLAIYSTGAGKIKIRGKA 248

Query: 255 HIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            IEK  G RE IVV+EIPY +   N    L     LV  K+  DI D+ + S + G R+V
Sbjct: 249 SIEKIKGGREAIVVSEIPYTMIGANIGKFLNDTYALVESKKTSDIVDISNMSSKDGIRIV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRGA A  +LN LYR T L+  F VNM+A+   KPE   ++ I++  V F+ E+  R
Sbjct: 309 IELKRGADAQNVLNLLYRKTRLEDTFGVNMLAVAEGKPETMGIVPIIRHHVNFQYELATR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +   LL K +++  +  GL  AV  +D ++ I+R S + + AR  L+         K   
Sbjct: 369 KYTNLLKKEKEKKEIQEGLIKAVDVIDLIIEILRGSRSVKMARACLVDGITEGIRFK--- 425

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                S  +      ++ ++ Q  AIL++R+ RL GL  + +R +       I+E +DIL
Sbjct: 426 -----SEQSEKDARLLHFTQRQADAILQMRMYRLIGLEIEQLRADYEKTMQNIQEDMDIL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             R+ +  +I ++L  +K      RRT I      + +E  I  ++MVV +   GYVK +
Sbjct: 481 EHRASMARVIIRDLKEIKKTFARKRRTLIDNVAEAVIEEKPIEEQEMVVLMDRFGYVKAI 540

Query: 552 PLSVY-RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            LSVY R Q    K    V+             S    +  FSS G ++  KV  +P G 
Sbjct: 541 DLSVYDRNQEAADKENKYVIH-----------CSNLDRLAVFSSTGQLHLIKVLDMPGGK 589

Query: 611 PQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            + +G  + N+   +   ERI     F E   +     V F T+ G +++   ++F  ++
Sbjct: 590 FRDKGTPIDNLSKFDSARERIL----FAEALGAVKESKVFFGTRAGYIKQVDGAEF-DVS 644

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R   IA KL   DE+++V T      +++ TK G  +R P+S I     + +VGV GI L
Sbjct: 645 RYSSIASKLGQGDELVAVGTIRGAETLVMETKSGYFLRIPVSDIPE-KKKAAVGVIGIKL 703

Query: 730 AKGDQVISMAIV 741
            + D+V  M ++
Sbjct: 704 GRADRVSQMYLL 715


>gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 798

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 272/753 (36%), Positives = 433/753 (57%), Gaps = 45/753 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTKY
Sbjct: 305 KDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + NE N L   IKE   IL +  
Sbjct: 408 ---------AEFEFTEAQAEAIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I   + +++ D++ +V  ED+V++++  GY+KR   
Sbjct: 459 ALLQVIKSELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ L+  E   T++    ++S  ++ + V AT++G ++++ +S F +  R  K
Sbjct: 574 LGQHVSQIVPLDDYE---TVVDVYNEQSFKDDAFYVLATRNGMIKKSNVSLF-KTTRYNK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +AMK+   DE+++V    ++  I + T  G  + +    +    G  + GV+ I+L  
Sbjct: 630 PLVAMKVKDNDELINVIRLNEDQLISVLTHKGMSLTYSSEELS-DTGLRAAGVKSINLKD 688

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            D V+   +V     D D  I       A +R+
Sbjct: 689 EDFVVMTDVV-----DSDSSIIMATQRGAVKRI 716



 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           SS+E  I+E +  +  +   E  +L+++ +G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 SSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              +L+    VN  D +++ ++KG  + +PV+++
Sbjct: 536 ---SLLKYQTVNTQDTVLVFTNKGRYLFIPVHKL 566


>gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
          Length = 826

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|73916820|gb|AAZ93278.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 309/905 (34%), Positives = 487/905 (53%), Gaps = 127/905 (14%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 241 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++
Sbjct: 301 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 361 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      ++ E   L  +I     I+    
Sbjct: 408 -------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR   
Sbjct: 455 TMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSP 611
             + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI   
Sbjct: 515 RSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE- 561

Query: 612 QARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNK 661
                 L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R +
Sbjct: 562 ------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVE 615

Query: 662 LSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
             +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V  
Sbjct: 616 RKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-V 673

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK 
Sbjct: 674 GAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLKR 713

Query: 778 DSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGI 827
             S+E  ++  R +       ELK K   +     V+E+GF                   
Sbjct: 714 -VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------- 753

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                     +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T 
Sbjct: 754 ----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTI 802

Query: 887 KDERV 891
            DE V
Sbjct: 803 SDEEV 807


>gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
          Length = 969

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 284/740 (38%), Positives = 427/740 (57%), Gaps = 48/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV DG +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  R 
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILIGKNSLRSAYESGVGKVAYRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            ++IEK    R  I +TE PY+ NKA +L+ I+E+  ++R    +  I+D+RDESDR G 
Sbjct: 251 KTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNGI 310

Query: 309 RVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIELK+ A   SA+ IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V  +
Sbjct: 311 RAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKDMIRHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RR++  L  A+ R H++ G   A+  LDEV+ IIR S + + A   L+++     
Sbjct: 371 KEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEK----- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +  Q +AILEL L RLTGL       E   L   IK
Sbjct: 426 ---------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
               ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T+S
Sbjct: 465 RLEKILSNEKELLKVIKFELKEISDKYGDERKTNIIEDDAKSKIDIEELIIVEEVMITLS 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++KR+P+  Y    R       +  R+ D +  L   +T  S+L F+  GF+Y+ K 
Sbjct: 525 KDGFIKRIPVKNY---IRSNSNPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKG 581

Query: 604 WRLPIGSPQARGKALINIL-SLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +P    + +G+ L  I+ SLN + E+I  ++    D  + N ++  F TK G ++ + 
Sbjct: 582 INIPELKWKEKGERLDTIIKSLNLEDEKIVEVISV--DNFNPNKIF-RFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKI-AMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRV-FAG 718
           L  F      GK+ A+KL  +D +L+V+    +EN+  L  K    + F I    +    
Sbjct: 639 LDKF--ETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPELENVP 696

Query: 719 RNSVGVRGISLAKGDQVISM 738
           RN + ++  +L+  D++I +
Sbjct: 697 RNILPIQLFNLSIDDEIIEV 716



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 26/170 (15%)

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS--------LNQGERITTIM 634
           +++  ++L FS+ G++YK     +P       G  L NI++          + E+   I+
Sbjct: 752 INSSKTLLLFSNKGYIYK-----IP-------GFLLKNIMNGDIKLEVFTGELEKKEKII 799

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVE--TCT 691
                 S  +NL +   +K G V++  L++F +++   +   KL + D E++SV+    T
Sbjct: 800 RISSISSYNDNLALYSFSKKGLVKKTLLNEF-KVDTQKQFFYKLKTEDDEVISVDINNIT 858

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             N I++T K G  +RFP+  +    G+ + GV GISL + D+VI  A V
Sbjct: 859 LGNLIIITKK-GMAIRFPVENVNSM-GKVASGVTGISLREEDEVIFGAYV 906


>gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
 gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
          Length = 826

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 299/888 (33%), Positives = 476/888 (53%), Gaps = 91/888 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  T R + +     +++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATSRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F++LG V    +  L    
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTTLGNVIYRPIHELADIR 569

Query: 611 PQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVF-ATKHGNVRRNKLSDF--- 665
            +  G+ L  +I +    E I     + E    +++    F AT+ G ++R +  +F   
Sbjct: 570 WKDIGEHLSQSITNFETNEEIL----YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPW 625

Query: 666 -IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G  + GV
Sbjct: 626 RTYKSKSVKYAKLKDETDQIVAV-APIRLDDVLLISQNGYALRFNIEEVPV-VGAKAAGV 683

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L K D  +  A + +  + Y         +  QR                    G+
Sbjct: 684 KAMNL-KADDALQAAFICNTSSFY---------LLTQR--------------------GS 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +     +E+    +           KR       + N+  +   A  V++   +G L + 
Sbjct: 714 LKRVSIEEIPATSR----------AKRGLQVLRELKNKPHRVFLAGAVAEQGLVGDLFST 763

Query: 845 FPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 764 -EMEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
 gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
          Length = 808

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/741 (36%), Positives = 427/741 (57%), Gaps = 45/741 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RVVI
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRVVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++                +
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKK----------------N 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ + S+T          E Q  AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 408 LVSEFSFT----------EAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I + +  L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----- 665
            +  G+ L   + L   E +     F   ES   +   + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLGNDEYVLNAFVF---ESIDQDAKFLIATKEGYIKQVKLADLKPGRT 629

Query: 666 IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +   S  + +K D+ DE++SV    + ++ +   +  G  +R+ +  +    G  + GV
Sbjct: 630 YKTRASRYVKLKTDA-DEVISVSQVESDKSQVFCASYTGYGLRYSLDEVPT-NGALAAGV 687

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + + L + D + ++ +V  +D
Sbjct: 688 KCMDL-RDDTLANVILVSESD 707


>gi|148241104|ref|YP_001226261.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
 gi|147849414|emb|CAK26908.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 820

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 278/747 (37%), Positives = 425/747 (56%), Gaps = 65/747 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S+S+  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y KCA
Sbjct: 6   IVSISLHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ Q +  R  L++G GNFGSVD DPPAA RYTE RL
Sbjct: 66  RVVGDVLGKYHPHGDQAVYDALVRLVQTFGCRNPLLDGHGNFGSVDDDPPAAMRYTETRL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  LL+++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP HN
Sbjct: 126 APVSHQALLEEIGSDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATSIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  VA+I NP++  + L++++ GPDFPTG V+L  +G+++ Y  GRGSI +RGV+
Sbjct: 186 LGEVVDALVALIRNPNLSDEKLLQLVPGPDFPTGGVVLTGSGLRDTYLHGRGSIPMRGVA 245

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           HIE     K    R  +V+TE+PYQ++KA  +EK+AE V + ++  IAD+RDESDR G R
Sbjct: 246 HIEEVQPGKGRHKRNAVVITELPYQLSKAGWIEKLAEQVNDGKVAGIADIRDESDRDGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+EL+R A+ + +L QL++ T+LQ+ F   ++AL   +P + +L  +L+ F+ +RE  +
Sbjct: 306 VVVELRRDANPEQVLAQLHKRTALQNNFGAILLALVNGQPIQLSLRQMLQQFLEYRELTM 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT+Y L +  +R  V+ GL  A+ +L +V+++I              Q + +A+  K 
Sbjct: 366 MRRTRYALRRCEERLEVVEGLIKALDDLAKVIQMI--------------QDARDAASAK- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                  +S  +  D    +SE Q  A+L + L RLTGL ++ +R EL  L  E      
Sbjct: 411 -------ASLQVHLD----ISERQADAVLSMPLRRLTGLEQESLRQELEELRQEQSRLRH 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L  R  LL  +  EL  ++    TPRRT + EG       D +V +       +   ++
Sbjct: 460 LLDDRKSLLDTLVSELKHLRKRYATPRRTALQEG------GDELVAQRTAAQRPNTEMLR 513

Query: 550 RVPLSVYRAQRRGGKGRSGV-------------VMRDEDF------VTDLFIVSTHTSVL 590
           +  L+   + ++      G+             ++ D DF         L  V     +L
Sbjct: 514 KQALANVSSDQQLLWQSDGILRLVTPQVLGRLHLLDDLDFGDHGCSAKLLLPVQPEPQLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G V   + W      P    + L + +   Q E++  ++  P  +  ++   V  
Sbjct: 574 AFTSGGRVAALR-WEFAAQQPGPLERFLPDSVD-GQAEQVVDVLVVPPADQDFS---VGL 628

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G  +R    D  +++      +KL    ++  V  C   +D+ + +  G+ +R P+
Sbjct: 629 LSSDGRFKRLAGQDLRELSGRATTVLKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPV 688

Query: 711 --SAIRVFAGRNSVGVRGISLAKGDQV 735
             S I V  GR + G   + L  G+ +
Sbjct: 689 DDSTIPVM-GRTAQGPVLMRLLPGESI 714


>gi|171779307|ref|ZP_02920271.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281924|gb|EDT47355.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 819

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 283/746 (37%), Positives = 416/746 (55%), Gaps = 70/746 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K 
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLRDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 DIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A    ILN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+K
Sbjct: 303 KKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE   L   I     I+   
Sbjct: 406 -KVSYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR T +      ++++    IV ED  V+V+  GY+KR  
Sbjct: 457 RTMYNVMKRELREVKKKFANPRLTELQAEAQTIEIDVASLIVEEDTYVSVTKGGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G+     RD+D +  +    T   +L F++LG V    ++R P+    
Sbjct: 517 PRSYNASTVEEIGK-----RDDDELVFVSQAKTTQHLLIFTNLGNV----IYR-PVHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVF--------------ATKHGNV 657
                L +I   + GE ++ TI  F  DE      YV++              ATK+G +
Sbjct: 565 -----LTDIRWKDIGEHLSQTITNFATDE------YVLYAEIVDEFGPQTYFAATKYGQI 613

Query: 658 RRNKLSDFIQINRSGKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R +  +F         A+   KL   D+I+        +D+++ T  G  + F I  + 
Sbjct: 614 KRFERKEFTPWRTYKSKAVKYAKLKKDDDIVVTIAPIALDDVMVITHNGYALHFNIDEVP 673

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAI 740
           V  G  + GV+ I+L   D V+S  I
Sbjct: 674 V-VGAKAAGVKSINLKDDDFVVSAFI 698


>gi|73916898|gb|AAZ93317.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 310/907 (34%), Positives = 490/907 (54%), Gaps = 128/907 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SR-LLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            R +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR 
Sbjct: 455 RRTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIG 609
               + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI 
Sbjct: 515 SPRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIH 562

Query: 610 SPQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRR 659
                   L +I   + GE ++ TI  F  +E+         +++    F AT+ G ++R
Sbjct: 563 E-------LADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKR 615

Query: 660 NKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V
Sbjct: 616 VERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV 674

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G  + GV+ ++L K D V+    + +  + Y         +  QR           SL
Sbjct: 675 -VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSL 713

Query: 776 KNDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGK 825
           K   S+E  ++  R +       ELK K   +     V+E+GF                 
Sbjct: 714 KR-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF----------------- 755

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFS 884
                       +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  
Sbjct: 756 ------------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISD 802

Query: 885 TAKDERV 891
           T  DE V
Sbjct: 803 TISDEEV 809


>gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 798

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 273/741 (36%), Positives = 428/741 (57%), Gaps = 45/741 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RVVI
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRVVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++                +
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKK----------------N 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ + S+T          E Q+ AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 408 LVSEFSFT----------EAQSEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I + +  L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----- 665
            +  G+ L   + L   E +     F   E+   ++  + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLENDEYVLNAFVF---ENIDQDVKFLIATKEGYIKQVKLADLKPGRT 629

Query: 666 IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +   S  I +K D  DE++SV    + ++ +   +  G  +R+ +  +    G  + GV
Sbjct: 630 YKTRASRYIKLKTDV-DEVISVSQVESDKSQVFCASYTGYGLRYSLDEVPT-NGALAAGV 687

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + + L + D + ++ +V  +D
Sbjct: 688 KCMDL-RDDTLANVILVSESD 707


>gi|70726554|ref|YP_253468.1| DNA topoisomerase IV subunit A [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447278|dbj|BAE04862.1| topoisomerase IV subunit A [Staphylococcus haemolyticus JCSC1435]
          Length = 799

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 286/823 (34%), Positives = 459/823 (55%), Gaps = 67/823 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTKY
Sbjct: 305 KDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + NE N L   IKE   IL +  
Sbjct: 408 ---------AEFEFTEAQAEAIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I   + +++ D++ +V  ED+V++++  GY+KR   
Sbjct: 459 ALLQVIKSELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ L+  E   T++    ++S  ++ + V AT++G ++++ +S F +  R  K
Sbjct: 574 LGQHVSQIVPLDDYE---TVVDVYNEQSFKDDAFYVLATRNGMIKKSNVSLF-KTTRYNK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +AMK+   DE+++V    ++  I + T  G  + +    +    G  + GV+ I+L  
Sbjct: 630 PLVAMKVKDNDELINVIRLNEDQLISVLTHKGMSLTYSSEELS-DTGLRAAGVKSINLKD 688

Query: 732 GDQVI-------SMAIVLHADADYDERICYMKHMSAQR----------------RLISG- 767
            D V+         +I++       +RI Y     A+R                R+++G 
Sbjct: 689 EDFVVMTDVVDSDSSIIMATQRGAVKRISYKILQQAKRAQRGITLLKELKKNPHRVVAGY 748

Query: 768 --DTEEITSLKNDS-SVEGNISEERCQELKLKEQFILTVSEKG 807
               E + +L ++S S EG I++    E      F++ V E G
Sbjct: 749 VVKDESMYTLYSESHSEEGQITDIHLSEQYTNGSFVVDVKEFG 791



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 10/94 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           SS+E  I+E +  +  +   E  +L+++ +G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 SSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              +L+    VN  D +++ ++KG  + +PV+++
Sbjct: 536 ---SLLKYQTVNTQDTVLVFTNKGRYLFIPVHKL 566


>gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713]
          Length = 808

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 272/741 (36%), Positives = 427/741 (57%), Gaps = 45/741 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RVV+
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRVVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++                +
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKK----------------N 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ + S+T          E Q  AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 408 LVSEFSFT----------EAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I + +  L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----- 665
            +  G+ L   + L   E +     F   ES   +   + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLGNDEYVLNAFVF---ESIDQDAKFLIATKEGYIKQVKLADLKPGRT 629

Query: 666 IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +   S  + +K D+ DE++SV    + ++ +   +  G  +R+ +  +    G  + GV
Sbjct: 630 YKTRASRYVKLKTDA-DEVISVSQVESDKSQVFCASYTGYGLRYSLDEVPT-NGALAAGV 687

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + + L + D + ++ +V  +D
Sbjct: 688 KCMDL-RDDTLANVILVSESD 707


>gi|259046725|ref|ZP_05737126.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036621|gb|EEW37876.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
          Length = 822

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 287/729 (39%), Positives = 425/729 (58%), Gaps = 42/729 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K++ K A
Sbjct: 7   IQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMSIDGNTSDKQFRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDP AA RYTE RL
Sbjct: 67  KTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRDVLIEMHGNNGSMDGDPAAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL DL K TV+F  N+D + +EP VL ARYPN+LVNG  GI+ G AT IPTHNL
Sbjct: 127 SKISEELLKDLDKKTVEFVLNFDDTEEEPTVLPARYPNLLVNGATGISAGYATEIPTHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  +  ID+P   +  LM+ ++GPDFPTG +I G   ++ AY TGRG +VIR  + 
Sbjct: 187 GEVIDATIHAIDHPKATVKELMQFVKGPDFPTGGIIQGLEELEQAYETGRGKVVIRSKTK 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G + QI+++EIPY+VNKA +++KI E+   K+I  IA++RDESDR G ++V+ELK
Sbjct: 247 IEPIKGGKSQIIISEIPYEVNKALLVKKIDEIRLNKKIDGIAEVRDESDRTGLQIVVELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A+ ILN L + T LQ  ++ NMVA++  +P +  L  IL +++ F++EV+ RRT+Y
Sbjct: 307 KEANAEGILNYLLKNTDLQVNYNFNMVAIDERRPVQVGLKTILTSYINFQKEVITRRTQY 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+DR H++ GL  A++ LDEV+ +IR S + + A+  L++                
Sbjct: 367 DLKKAQDRLHIVDGLMKALSILDEVIALIRNSKDKKHAKERLVE---------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             +Y    D TM    +Q  AI+ L+L RLT      ++NE   L  +I   L IL S  
Sbjct: 411 --TY----DFTM----IQAEAIVNLQLYRLTNTDITILQNEKLDLNEQIATFLSILKSEK 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL ++K EL  +K +  TPR T+I      + +E E  +  E++ V  +  GY KRV  
Sbjct: 461 TLLQVMKSELRDLKKKYATPRLTQIQAEIEEIKIETEVLVTEEEVYVVATKQGYYKRVSP 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + +      G     MR+ D V      ST  +++ F+S G      V  +P    + 
Sbjct: 521 RSFASSAPEENG-----MREGDEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPEAKWKD 575

Query: 614 RGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G  L   +SL   E I T  +   + + S+ +  VVF TK G V++   ++F    R  
Sbjct: 576 VGNHLSQSISLGSNEVILTGFVKAKDSDDSYKDWTVVFFTKEGLVKQTLFNEFTTY-RGY 634

Query: 673 KI----AMKLD-SRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           K     AMKL  + DE++ V     E+ ++ + T  G  +R+ +S I V  G  + GV+ 
Sbjct: 635 KTRTSNAMKLKTTTDEVVKVVVTNPESLEVFIVTHCGFGLRYELSEIPV-VGTVASGVKA 693

Query: 727 ISLAKGDQV 735
           I+L K D V
Sbjct: 694 INLRKEDFV 702


>gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
 gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
          Length = 813

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 292/743 (39%), Positives = 407/743 (54%), Gaps = 67/743 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  EM+ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+  ++ +VKCA
Sbjct: 20  VIDVDVAAEMRGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMREMGLRSDRPHVKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PPAAERYTECR 134
           R+ G+VMGK HPHG+ AIYDAL RMAQ +++ L L++G GNFGS+ GD PPAA RYTECR
Sbjct: 80  RVVGDVMGKLHPHGDMAIYDALVRMAQPFAMWLPLVDGHGNFGSLGGDDPPAAYRYTECR 139

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  AA  +  DL +D VDF PNYDG   EPVVL A +PN+LVNG  GIAVGMATN+P HN
Sbjct: 140 MTAAAEAMTADLDEDVVDFAPNYDGQETEPVVLPAAFPNLLVNGASGIAVGMATNMPPHN 199

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVV     +++NP   LD LM  + GPD PTG  I+G  G++ AYATGRGS  +R  +
Sbjct: 200 LGEVVAAARYLLENPQASLDELMRWVPGPDLPTGGEIVGLDGVREAYATGRGSFRMRATA 259

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIE 313
            IE+  G R+ IVVTE+PY V    ++ +I +LV  K++  IAD+RD +DR  G RVVIE
Sbjct: 260 RIEEVRGRRKGIVVTELPYGVGPERVVARIKDLVSAKKLAGIADVRDLTDRHHGLRVVIE 319

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +++G     +L+QLY+ T L+  F+VN VAL   +P    L  +L+ +V  R EV  RR+
Sbjct: 320 VRQGFDPQAVLDQLYKLTPLEESFAVNNVALVDGQPRTLGLADLLQVYVGHRIEVTRRRS 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   +   + H++ G   A+ ++D V+ IIR S +   AR  LM+              
Sbjct: 380 AFRKKRREAQLHIVEGRLRAIVDIDRVIAIIRASDDTAQARDALME-------------- 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T  L+EVQ   IL+L L RLT   + ++  E + L  +I    DIL S
Sbjct: 426 ------------TFGLTEVQANDILDLPLRRLTKFSKIELEAERDELRRDIASLGDILGS 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTR--------IVEGLLDMEDEDCIVREDMVVTVSHL 545
             RL  ++  EL +V ++  TPRRTR        +    L++ D  C       V +S  
Sbjct: 474 EQRLRAVVSAELAAVAEQFATPRRTRLTADDGSPVTSRPLEIPDSPC------CVVLSAT 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           G + R           G    SG   R   D + D   V+T   V   +S G V +  V 
Sbjct: 528 GLLART---------TGPGFPSGDADRARHDAIADAVEVTTRGDVGLITSQGRVLRLPVL 578

Query: 605 RLP----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            LP     G    A G  +  +L L  GE +  + P  E       L VV AT+ G V+R
Sbjct: 579 DLPSLDDTGPVSLAGGLPVSEVLGLEAGEELVGLTPVSE------QLDVVLATRSGVVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAG 718
             +S  +   +     + L   D ++   +  T  ++++L T   Q + FP++ +R   G
Sbjct: 633 --VSGRMPERKPDASIIALRPGDRVVGARSVRTGRDELVLITSDAQLLHFPVAELRP-QG 689

Query: 719 RNSVGVRGISLAKGDQVISMAIV 741
             + GV GI L+ G  VI  + V
Sbjct: 690 FAAAGVAGIHLSDGASVIFFSAV 712


>gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|254432446|ref|ZP_05046149.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
 gi|197626899|gb|EDY39458.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
          Length = 834

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 287/763 (37%), Positives = 418/763 (54%), Gaps = 86/763 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y KCA
Sbjct: 20  IQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKCA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE RL
Sbjct: 80  RVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRL 139

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH  LLD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 140 APIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIPPHN 199

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+I  PD+  + L  ++ GPDFPTG  +L  +G+++ Y  GRGSI +RGV+
Sbjct: 200 LGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSSGVRDTYRLGRGSIPMRGVA 259

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           HIE     K    R  +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+G R
Sbjct: 260 HIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDREGMR 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+EL+R A+AD +L +L R T+LQS F   ++AL   +P + +L  +L+ F+ +RE  +
Sbjct: 320 VVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPVQLSLRRLLQEFLDYRELTL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT++ L +  DR  V+ GL  A+  L EV+ +I  + +  +AR  L  R         
Sbjct: 380 IRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVR--------- 430

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  A+L + L RLTGL ++ +R E   L  E      
Sbjct: 431 -----------------LDLSERQADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRH 473

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---------------------- 527
           +L  R  LL  +  E  ++K    TPRRTR+VEG  D+                      
Sbjct: 474 LLDDRDSLLEAMVAEFRALKKRYGTPRRTRLVEGGDDLVAQRAAAARPNAELQRQQALEA 533

Query: 528 --EDEDCIVRED---MVVTVSHLGYV---KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
              D   +++ D    +VT   LG +   +  PL  + A                     
Sbjct: 534 LASDSRVLIQADRAVKIVTPQVLGRLHLEEPAPLGEHPAP-----------------AQL 576

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           L  V++   VL F++ G V   + W      P    + L + L   +G  +  ++P    
Sbjct: 577 LLTVASQPQVLAFTTDGRVAVLR-WEFAGQQPGPLERFLPDSL---EGASVMQVLPL--Q 630

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           E S  +L +   +  G  +R  L D   ++      +KL     +  V  C    ++++ 
Sbjct: 631 EGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELVVA 690

Query: 700 TKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIV 741
           +  G+ +R   +  +V   GR + G   + L   +Q++  A V
Sbjct: 691 SSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACV 733


>gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y++ +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 310/906 (34%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V     +  ++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIKLDY-VVLVSQNGYALRFNIEKVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 715

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K Q +     VSE+GF                  
Sbjct: 716 R-VSIEEILATSRAKRGLQVLRELKNKPQRVFLAGAVSEQGF------------------ 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 757 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 804

Query: 886 AKDERV 891
             DE V
Sbjct: 805 ISDEEV 810


>gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 488/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|83953741|ref|ZP_00962462.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841686|gb|EAP80855.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/509 (48%), Positives = 327/509 (64%), Gaps = 9/509 (1%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           +AV N+DEVV  IR S +   AR +LM R W A  I   I LIDD ++T   DGT  LSE
Sbjct: 1   MAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSE 60

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R++GII  EL  VKD+
Sbjct: 61  AQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQ 120

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
              PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  
Sbjct: 121 FAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQT 180

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           ++ED VT LF+ +THT +LFF++ G VYK K WRLP G   ++GKA++NIL +  G  I 
Sbjct: 181 KEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIA 240

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL--DSRDEIL-SVE 688
            IMP   DE  W++L VVFAT  G VRRNKLSDF  + R+GKIAMK   D  D  L +  
Sbjct: 241 AIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINAR 300

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             + ++D++L T  G+ +RFP + +RVF  R SVGVRGI L   D+V+SM+I+ H DA  
Sbjct: 301 IASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDDKVVSMSIIRHFDASS 360

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           +ER  Y+K     RR ++G  ++    ++++  + N S+ER  E+   E  +LT++EKG 
Sbjct: 361 EERTAYLK----MRRAMAGLADDAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGA 416

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L + KG  IRVPV 
Sbjct: 417 GKLSSSHDYPVRGRGGLGVTAMD--KAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVE 474

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERI 897
            I   SR+  GV +F T + E VVSV  I
Sbjct: 475 GISFRSRSAGGVKVFDTGRGEVVVSVAWI 503


>gi|28378500|ref|NP_785392.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum WCFS1]
 gi|254556714|ref|YP_003063131.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300767446|ref|ZP_07077358.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180657|ref|YP_003924785.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271336|emb|CAD64241.1| topoisomerase IV, subunit A [Lactobacillus plantarum WCFS1]
 gi|254045641|gb|ACT62434.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300495265|gb|EFK30421.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046148|gb|ADN98691.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 816

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 277/745 (37%), Positives = 421/745 (56%), Gaps = 48/745 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K +
Sbjct: 4   EQPKIQELTLEDVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNQDGNTFDKAF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+A+ R++QDW LR  LIE  GN GS+DGDP AA RYT
Sbjct: 64  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP
Sbjct: 124 EARLSKIAGEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  + ++++P   L+ LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R
Sbjct: 184 PHNLSEVIDAILFLMNHPKATLEDLMDFVKGPDFPTGGIIQGLAGIKQAYETGRGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I    G++ QI V+EIPY+VNKA +++KI E+   K+I  IA++RDESDRQG  VV
Sbjct: 244 SRTKIVPLKGNKSQIEVSEIPYEVNKAQLVKKIDEIRILKKIEGIAEVRDESDRQGLSVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR  +A+ IL  L + T LQ  ++ NMVA+   +PE   L  IL A++  + +VV R
Sbjct: 304 IELKRDVNAEGILTYLLKNTDLQITYNFNMVAIYHQRPEHVGLKTILTAYLEHQRDVVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DR H++ GL  A++ LD+V++ IR S + + A++ L+ +           
Sbjct: 364 RTQFNLQKAMDRQHIVQGLIKAMSILDQVIKTIRGSKDKKDAKQNLVSQ----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE+Q  AI+ ++L RLT      +  E   L   I     IL
Sbjct: 413 ---------------FDFSEIQAEAIVTMQLYRLTNTDVTQLEKESAELAKAIATYQLIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
           +    L  ++++EL +V+    T R T I   +  L ++ E  I +ED++V +SH GY+K
Sbjct: 458 AEPKELDKVLRRELKAVQKAYPTSRLTEIQNEIQELKVKTEVVIPQEDVIVMISHDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A      G     ++DED+   L   ST   ++ F+++G +    ++ +   
Sbjct: 518 RTSLRSYSASEPDDNG-----LKDEDYPIYLAKNSTLDHLMMFTNMGHLIYRPIYEIADA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666
             +  G+ +   + L + ERIT +  F   +++   L    AT  G +++   +D+    
Sbjct: 573 KWKDTGEHISQTIGLAENERITWVYSFENLKATGKFL---VATSDGYIKQTAFADYTPGR 629

Query: 667 --QINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +   S  I MK D    +++VE         ++L T+ G  +R+ +S +    G  +V
Sbjct: 630 TYKTRASQFIKMKSDDA-TVVTVEYLPAAPTGTLILITQHGYGLRYDLSEVPTI-GAKAV 687

Query: 723 GVRGISLAKGDQVISMAIVLHADAD 747
           GV+ + L + D ++   I   AD D
Sbjct: 688 GVKSMDL-RDDAIVRATIA--ADDD 709


>gi|73916932|gb|AAZ93334.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|229012771|ref|ZP_04169940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
 gi|229134400|ref|ZP_04263213.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|229168313|ref|ZP_04296038.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228615139|gb|EEK72239.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228649021|gb|EEL05043.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|228748452|gb|EEL98308.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
          Length = 807

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 294/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EP+VL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  ++ L+ +I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q+ AI+ L+L RLT      +  E   L  +I E   IL S  RL 
Sbjct: 409 AKFG------FTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLF 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDNRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKYFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + N++SL + E +   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANLVSLERDESLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ + D   ++  +    A +R+ + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGEKD---QLILVTQRGAVKRIKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      FR  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKHIVEEIDPKAFRNKDRYSNGSLVLDVNDTGEV 797



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|73916858|gb|AAZ93297.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916860|gb|AAZ93298.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916862|gb|AAZ93299.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916864|gb|AAZ93300.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|229018786|ref|ZP_04175635.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
 gi|228742536|gb|EEL92687.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
          Length = 807

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 295/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+  
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINHRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q+ AI+ L+L RLT      +  E   L  +I E   IL S  RLL
Sbjct: 409 AKFG------FTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  ++L F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + N+++L + E +   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANLVTLERDETLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ + D   ++  +    A +RL + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGEKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ I   +EK   +      +R  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELIYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E++
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELI 759



 Score = 38.1 bits (87), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  I+TV+++G+ KRT       SN    G++  D+        L+  F  N  + I+L
Sbjct: 501 QEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDI--------LLERFDTNTTETILL 552

Query: 856 VSDKGTLIRVPVNEI 870
            ++KG  I +PV E+
Sbjct: 553 FTNKGNYIYLPVYEM 567


>gi|67921390|ref|ZP_00514908.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
 gi|67856502|gb|EAM51743.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
          Length = 838

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/515 (47%), Positives = 335/515 (65%), Gaps = 33/515 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP HN
Sbjct: 133 SPIADQSMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG + +IDNP++  + L +II GPDFPTG  I+   GI+ AY  G+G I +RGV 
Sbjct: 193 LGEVVDGLIGLIDNPELSDEKLWKIIPGPDFPTGGEIINSQGIEEAYRHGKGIIPVRGVV 252

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            I+      K   +R  I+VTE+PYQVNK+A +EKIA+LV   R+  IAD+RDESDR G 
Sbjct: 253 KIQRMDVGKKRRKERTAIIVTELPYQVNKSAWIEKIADLVNNGRLDGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRDAVAKTVLKELYKKTALQQNFGAIMLALLDNQPCQLSLRQLLEEFLKFREDT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+    L + ++R H+L GL I++ +LD  + I+R + +  TA+ +  QR  N     
Sbjct: 373 LTRQYNNELQECQNRLHLLQGLLISLNDLDRTIDILRHAADGTTAKVQF-QRDLN----- 426

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AIL + + RLTGL R  ++ E + L  +I E  
Sbjct: 427 --------------------LSEAQANAILAMPMRRLTGLERQKLQAESDELEGKINELE 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
            +L++R   L ++K+EL S+K +    RRTRIV+ 
Sbjct: 467 TLLNNRPEFLKVLKKELRSLKRKYGDTRRTRIVQA 501



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           N  ++  T  G ++R +LS+   +   G + +KL   D +  +    +  ++ +    G+
Sbjct: 642 NHDLLLLTNQGKIKRIQLSELDGLTNRGLVLIKLKDNDYLEFISPTKEGEEVAIAMSSGR 701

Query: 705 CVRFPI-SAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +RFP+   +    GRN+ G + + L  G+ +IS
Sbjct: 702 VLRFPVVDEVIHIMGRNAQGNQALKLRYGENIIS 735


>gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 969

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 283/740 (38%), Positives = 426/740 (57%), Gaps = 48/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV DG +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  R 
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILIGKNSLRSAYESGVGKVAYRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            ++IEK    R  I +TE PY+ NKA +L+ I+E+  ++R    +  I+D+RDESDR G 
Sbjct: 251 KTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNGI 310

Query: 309 RVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIELK+ A   SA+ IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V  +
Sbjct: 311 RAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKNMIRHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RR++  L  A+ R H++ G   A+  LDEV+  IR S + + A   L+++     
Sbjct: 371 KEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEK----- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +  Q +AILEL L RLTGL       E   L   IK
Sbjct: 426 ---------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
               ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T+S
Sbjct: 465 RLEKILSNEKELLKVIKFELKEISDKYGDERKTNIIEDDAKSKIDIEELIIVEEVMITLS 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++KR+P+  Y    R       +  R+ D +  L   +T  S+L F+  GF+Y+ K 
Sbjct: 525 KDGFIKRIPVKNY---IRSNSNPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKG 581

Query: 604 WRLPIGSPQARGKALINIL-SLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +P    + +G+ L  I+ SLN + E+I  ++    D  + N ++  F TK G ++ + 
Sbjct: 582 INIPELKWKEKGERLDTIIKSLNLEDEKIVEVISV--DNFNPNKIF-RFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKI-AMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRV-FAG 718
           L  F      GK+ A+KL  +D +L+V+    +EN+  L  K    + F I    +    
Sbjct: 639 LDKF--ETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPELENVP 696

Query: 719 RNSVGVRGISLAKGDQVISM 738
           RN + ++  +L+  D++I +
Sbjct: 697 RNILPIQLFNLSIDDEIIEV 716



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 26/170 (15%)

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS--------LNQGERITTIM 634
           +++  ++L FS+ G++YK     +P       G  L NI++          + E+   I+
Sbjct: 752 INSSKTLLLFSNKGYIYK-----IP-------GFLLKNIMNGDIKLEVFTGELEKKEKII 799

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVE--TCT 691
                 S  +NL +   +K G V++  L++F +++   +   KL + D E++SV+    T
Sbjct: 800 RISSISSYDDNLALYSFSKKGLVKKTLLNEF-KLDTQKQFFYKLKTEDDEVISVDINNIT 858

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             N I++T K G  +RFP+  +    G+ + GV GISL + D+VI  A V
Sbjct: 859 LGNLIIITKK-GMAIRFPVENVNSM-GKVASGVTGISLREEDEVIFGAYV 906


>gi|163941203|ref|YP_001646087.1| DNA topoisomerase IV subunit A [Bacillus weihenstephanensis KBAB4]
 gi|163863400|gb|ABY44459.1| DNA topoisomerase IV, A subunit [Bacillus weihenstephanensis KBAB4]
          Length = 807

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 293/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EP+VL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  ++ L+ +I+GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+ A
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIVVELKKEA 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q+ AI+ L+L RLT      +  E   L  +I E   IL S  RL 
Sbjct: 409 AKFG------FTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSILQSEKRLF 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 QVIKTDLKRVKKTYSDNRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  ++L F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKYFG-----MKEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + N++SL + E +   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANLVSLERDESLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   DE++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V S    L+ + D   ++  +    A +R+ + + E+ T  K    +   +     +  
Sbjct: 693 YVAS-GKPLNGEKD---QLILVTQRGAVKRIKASEIEKSTRAKRGLVIFKELKRNPYRIV 748

Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             E+   ++ +   +EK   +      FR  +R   G    DV+   E+
Sbjct: 749 GIEIVRDDELVYMKTEKHIVEEIDPKAFRNKDRYSNGSLVLDVNDTGEV 797



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 309/906 (34%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|14531024|gb|AAK63177.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 304/897 (33%), Positives = 478/897 (53%), Gaps = 109/897 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A   G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AESVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +       T   +L F+SLG      V   PI    
Sbjct: 517 PRSFAASAIDEIGK-----RDDDRLIFGQSAKTIQHLLMFTSLG-----NVIYPPI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662
                L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R + 
Sbjct: 563 ---HELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVER 619

Query: 663 SDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F       ++S K A   D  D+I++V    + +D+LL ++ G  +RF I  + V  G
Sbjct: 620 KEFSPWRTYKSKSVKYAKLKDETDQIVAV-APIKLDDVLLISQNGYALRFNIEEVPV-VG 677

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             + GV+ ++L K D V+    + +  + Y         +  QR    G  + ++  +  
Sbjct: 678 AKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----GSLKRVSVEEIP 723

Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           ++       +  +ELK K   +     VSE+GF                           
Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVSEQGF--------------------------- 756

Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +G L +   V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 757 --VGDLFST-EVEENDQTLLVQSNKGTIYENRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|318042970|ref|ZP_07974926.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0101]
          Length = 834

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 282/766 (36%), Positives = 425/766 (55%), Gaps = 75/766 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D  +++ I  + +  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  
Sbjct: 11  PDPSDDRRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTP 70

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 128 ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL   A+  +LD++G DTVDF PN+DGS QEP VL A+ P +++NG  GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLILNGCTGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEVVD  +A++  PD+  + L+E++ GPDFPTG  +L  +G+++ Y TGRG
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPDLSDEKLLELVPGPDFPTGGEVLTGSGVRDTYLTGRG 250

Query: 247 SIVIRGVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           SI +RGV+HIE     K    R  +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RD
Sbjct: 251 SIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR+G RVV+EL+R A+ + +L +L R T+LQS +   ++AL   KP + TL  +L+ F
Sbjct: 311 ESDREGMRVVVELRRDANPETVLGELQRRTALQSNYGAILLALVHGKPIQLTLRQLLQEF 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + +RE  ++RRT++ L +A DR  V+ GL  A+  L +V+ +I  +P+  +AR  L    
Sbjct: 371 LDYRELTLIRRTRHALKRAEDRLEVVEGLITALNALPKVIEMITAAPDAASARASLQVH- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + L+E Q  A+L + L RLTGL ++ +R E   L 
Sbjct: 430 -------------------------LDLNERQADAVLAMPLRRLTGLEQESLRKEAEDLR 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-------------- 527
            E      +L  R  LL  +  E  ++K    TPRRTR+VEG  ++              
Sbjct: 465 QERARLRHLLDERPALLDAMVAEFKALKKRFATPRRTRLVEGGDELVAQRTAAQRPNTEV 524

Query: 528 ----------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
                      D   +++ D  V V     + R+ L                 + D    
Sbjct: 525 LRQRAFEGLPSDGRLVIQADGQVKVVGPQLLGRLHLD------------EPAPLGDNPSP 572

Query: 578 TDLFI-VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
             L + +S   ++L F+  G V   + W      P    K L   ++   GE++  ++P 
Sbjct: 573 ARLILPISEKPALLAFTDAGRVALLR-WEFAGQQPGTLEKFLPEGMN---GEQVVQLLPL 628

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
           P  E +     V   +  G  +R  + DF +++      +KL     +  V  C  + ++
Sbjct: 629 PSGEQAAGA-SVGLLSSDGRFKRLPIEDFQELSGRATSVLKLKDGVTLQRVVLCRDDEEL 687

Query: 697 LLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           ++ +  G+ +R  ++ A     GRN+ G   + L  G+ V+  A V
Sbjct: 688 VVASSTGRMLRLAVNDANLPVMGRNAQGPVLLRLLPGESVVGAAGV 733


>gi|229162429|ref|ZP_04290390.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
 gi|228620908|gb|EEK77773.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
          Length = 807

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 286/763 (37%), Positives = 441/763 (57%), Gaps = 45/763 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 9   LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYTE RL   
Sbjct: 69  GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP H+LGEV
Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IRG + +E 
Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V+ELK+  
Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEV 308

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV RR++Y L 
Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEV+  IR S +   A+                    D+ S
Sbjct: 369 KAENRQHIVEGLKKALSILDEVIETIRASKDKRNAK--------------------DNLS 408

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              G       +E Q+ AI+ L+L RLT      +  E + L  +I E   IL S  RLL
Sbjct: 409 TKFG------FTEAQSEAIVSLQLYRLTNTDITALEQEADELNKKIIELQSILQSEQRLL 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK +L  VK      RR  I E + +++   E  I +ED++VTV+  GYVKR     +
Sbjct: 463 HVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G     M++ D + + F  +T  +VL F++ G      V+ +P    +  G+
Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQ 577

Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673
            + N++SL + E I   T++P  E+E      ++VF T++G +++ +L+ + +Q      
Sbjct: 578 HVANLVSLERDEMIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+ L   D ++ +      +DI+L T     + F    +    G  + GV+ I+L + D
Sbjct: 634 VAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V S    L+ + D   ++  +    A +RL + + E+ T  K
Sbjct: 693 YVAS-GKPLNGEKD---QLILVTQRGAVKRLKASEIEKSTRAK 731



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759


>gi|108796988|ref|YP_637185.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119866072|ref|YP_936024.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
 gi|108767407|gb|ABG06129.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119692161|gb|ABL89234.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
          Length = 1257

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 285/778 (36%), Positives = 432/778 (55%), Gaps = 94/778 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 611

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N + D    L A+ME ++GPDFPT  +I+G  GI++ Y TGRG
Sbjct: 612  PPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQGIEDTYKTGRG 671

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DR 305
            S+ +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I+++ D+S DR
Sbjct: 672  SVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 731

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 732  VGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVEHQ 791

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 792  LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR----------- 840

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 841  --AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 885

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I++ EL  + D+    RRTRIV    ++ DED I RED+VVT++  
Sbjct: 886  DLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAREDVVVTITET 945

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 946  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYE 1005

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT++G V++++L+DF
Sbjct: 1006 LPEASRTARGQHVANLLAFQPNERIAQVIQIKSYEDA---PYLVLATRNGLVKKSRLTDF 1062

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1063 -DSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPM-GRATS 1120

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D+++S+ +V                          DT  + +     +  
Sbjct: 1121 GVQGMRFNADDELLSLNVV------------------------RPDTYLLVATSGGYAKR 1156

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +I E   Q               G G  T  YD R               + N +GAL+
Sbjct: 1157 TSIEEYTAQ------------GRGGKGILTIQYDRR---------------RGNLVGALI 1189

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+
Sbjct: 1190 ----VDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEA 1243



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 90/130 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 21/219 (9%)

Query: 539  VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-- 596
            +V  +  G VK+  L+ + + R GG     V +RD D +    + S+   +L  S+ G  
Sbjct: 1045 LVLATRNGLVKKSRLTDFDSNRSGGI--VAVNLRDGDELVGAVLCSSEDDLLLVSAKGQS 1102

Query: 597  --FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
              F   ++  R     P  R  + +  +  N  + + ++     D       Y++ AT  
Sbjct: 1103 IRFSATDEALR-----PMGRATSGVQGMRFNADDELLSLNVVRPD------TYLLVATSG 1151

Query: 655  GNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPIS 711
            G  +R  + ++    R GK  + ++ D R   ++       + ++   T  G  +R    
Sbjct: 1152 GYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVIRTAAR 1211

Query: 712  AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             +R  AGR + GVR ++L +GD +I++A    A    DE
Sbjct: 1212 QVRK-AGRQTKGVRLMNLGEGDTLIAIARNAEAGDSTDE 1249


>gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
 gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
          Length = 801

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/735 (34%), Positives = 427/735 (58%), Gaps = 39/735 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGGIIQGLDGIKKAYESGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R++++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSEAIKNFLYKNSDLQISYNFNMVAISDGRPKLMGIKQIIDSYINHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E + L   IK+   IL    
Sbjct: 408 ---------AEFDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++ +  T R + I   +  + ++ E  +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKNELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G S V ++D D +     V+T  + L F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+S+++ E++  +  F E + +    + + AT++G ++++ +  F +  R  K
Sbjct: 574 LGQHVSQIVSIDEDEQVIDV--FNEKDFNQREAFYIMATRNGMIKKSSVPQF-KTTRYNK 630

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             IAMK+  +DE++++     +  I + T  G  + +  + +    G  + GV+ I+L  
Sbjct: 631 PLIAMKVKEQDEVINIMRVESDQLITVVTHKGMSLTYSTNELSD-TGLRAAGVKSINLKD 689

Query: 732 GDQVISMAIVLHADA 746
            D V+   ++ H+++
Sbjct: 690 EDFVVMTQMINHSES 704



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ +L+++  G+ KRTS+  F  S  S  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTSTRSFNASGVSEVGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
              +L+    VN  D  ++ ++KG  + +PV+   EIR          I S  +DE+V+ 
Sbjct: 536 ---SLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVID 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|223932481|ref|ZP_03624483.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
 gi|223898935|gb|EEF65294.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
          Length = 805

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 267/716 (37%), Positives = 406/716 (56%), Gaps = 44/716 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLADIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R    IE+    ++QIV+TEI
Sbjct: 188 KLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKKQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+VNKA +++KI ++    ++  IA++RDESDR G R+ IELK+ +    ILN LY+YT
Sbjct: 248 PYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTILNYLYKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K+   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A+  L                    SY          SE
Sbjct: 368 RVISILDEVIALIRASENKADAKENL------------------KVSYD--------FSE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      + NE  +L  +I+    I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKELREVKKQ 461

Query: 512 LDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PR + + +    ++++    IV E+  V+V+  GY+KR     + A      G+   
Sbjct: 462 FGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLEEMGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN-ILSLNQGE 628
             RD+D +  L    T   +L F++LG V    V  L     +  G+ L   +++ +  E
Sbjct: 519 --RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSE 576

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI----NRSGKIAMKLDSRDEI 684
            I     F E   ++        T++G ++R +  +F       ++S K A   D+ D +
Sbjct: 577 EII----FAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKLKDAEDVV 632

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           ++V      +DI+L T+ G  +RF I  + +  G  + GV+ ++L  GD V++  I
Sbjct: 633 ITVSPVVL-DDIMLMTEKGYALRFNIEEVPII-GAKAAGVKAVNLKDGDVVVAAFI 686


>gi|183603372|ref|ZP_02714487.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
 gi|183571363|gb|EDT91891.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
          Length = 826

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|73916872|gb|AAZ93304.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|15900740|ref|NP_345344.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae TIGR4]
 gi|19861240|sp|P72525|PARC_STRPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14972328|gb|AAK74984.1| topoisomerase IV, subunit A [Streptococcus pneumoniae TIGR4]
          Length = 823

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 715

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 716 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 757 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 804

Query: 886 AKDERV 891
             DE V
Sbjct: 805 ISDEEV 810


>gi|148993667|ref|ZP_01823114.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|147927747|gb|EDK78770.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|332073184|gb|EGI83663.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17570]
          Length = 811

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 480/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    F AT+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|318062526|ref|ZP_07981247.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actG]
 gi|318078753|ref|ZP_07986085.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actF]
          Length = 822

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 289/751 (38%), Positives = 418/751 (55%), Gaps = 64/751 (8%)

Query: 8   SDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +DE + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+ 
Sbjct: 16  ADEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLR 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 76  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPP 135

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  + D + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVG
Sbjct: 136 AAMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I +P+ DLD LM+ + GPD PTG  I+G  GI++AYA GR
Sbjct: 196 MATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIVGLAGIRDAYANGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 256 GSFKTRASVTVENVTARRKGLVVTELPFTVGPEKVVAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDH 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++     
Sbjct: 376 RFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEH---- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 432 ----------------------FSLSETQTQYILDTPLRRLTRFDRIELESERDRLNAEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +  TPRRT ++E          L + D+ C    
Sbjct: 470 EELTAILESDTELRKLVSGELAAVAKKYGTPRRTVLLESADTPVAAIPLQVADDPC---- 525

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P +     + G   R+       D +      +    V   +S G
Sbjct: 526 --RVLLSSTGVIARTPGT--EPLQEGSAKRA-----KHDVIRSAVPATARGEVGAVTSAG 576

Query: 597 FVYKEKVWRLP-----IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            + +  V  LP      G     G  +   + L   E +  +     DESS     +   
Sbjct: 577 RLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTL--DESSPG---LAIG 631

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R  + D+   NR     + L   D I+ + E  T E D++  T   Q +RF  
Sbjct: 632 TAQGVVKR-VVPDY-PANREELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFQA 689

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           SA+R   GR + GV G+ LA G +V+S  +V
Sbjct: 690 SAVRP-QGRPAGGVAGVKLADGAKVLSFDVV 719


>gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 795

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 305/902 (33%), Positives = 465/902 (51%), Gaps = 133/902 (14%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRILF M ++G+  NK Y K A
Sbjct: 4   IKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE +GK+HPHG+ ++YDAL RMAQD+++R  LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  RVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP HN 
Sbjct: 124 TKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPHNF 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            EV +    +   PD  ++ L + I+GPDFPTG +I      I + Y T RGSI I+G +
Sbjct: 184 TEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKGKA 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G+R+++V+ EIPYQVNK  ++++IAELVR  +   I+DLRDESDR G R+VIEL
Sbjct: 244 RIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  + +L +LY+ T L+  F VN   L   +P+  +L  IL+ F+  R EV+ RRT 
Sbjct: 304 KRDADPEKVLKKLYKSTPLEKSFPVNFTVLVDKQPKVLSLKEILQEFIKHRLEVITRRTL 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +R H++ GL +A+ N D+V+ I+R S +   A REL+   +N           
Sbjct: 364 FDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQA-RELLTTRYN----------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q  AIL++RLAR T L    ++ E   L  +I+    ILS+ 
Sbjct: 412 --------------LTETQANAILDMRLARFTALETTKLKEEKKELEAQIENYKKILSTE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +  QE+  +  +    R+T I        +++   +E  +  +   G        
Sbjct: 458 EEKIKVFIQEMDEMLSKYSDERKTTIA------VEKELTFKEYFMFAIMSSG-------K 504

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFI-------------VSTHTSVLFFSSLGFVYKE 601
           VY  +      +S ++ +    + D+ +             V +   V FF+  G    +
Sbjct: 505 VYNHKVDENTDKSEILQK---IINDISLNSVEGKKIVSIQEVESSKPVAFFTKEG----K 557

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             W L I  P+  GK  I+       E + TI    + E   N ++++  TK G ++R  
Sbjct: 558 ADWSLVIDLPKGEGKLKID------SEIVGTIY---QGEGEENRVFLI--TKKGIIKRMF 606

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             D    +    + M L+  DE+         + I + TK    + F  + +RV  G  +
Sbjct: 607 DEDIFYKSHKHTV-MPLNEGDELAVAIADQNPSYIGIYTKNADLLLFERNEVRV-TGDKA 664

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV GI L   D+V                        A   LI G              
Sbjct: 665 KGVEGIDLDPNDEV------------------------AGSFLIDG-------------- 686

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                            +IL  + KG+ K     +F I  R  KG+ A    K+N+   +
Sbjct: 687 ---------------HNYILIATSKGYMKLVEKSEFPIKKRGQKGLMAV---KLNKDDYV 728

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDE--RVVSVERI 897
           V++ PV+  + +++ +  G L+++ V+   I I  R + G   F+   D   +V+ + + 
Sbjct: 729 VSMIPVDIGEDVLVQTKHGKLLKIKVDPSIIPIGKRTSTGENKFNFEADSIVKVLKLPKF 788

Query: 898 RE 899
           +E
Sbjct: 789 QE 790


>gi|148984585|ref|ZP_01817853.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|148997069|ref|ZP_01824723.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|307067452|ref|YP_003876418.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|147756769|gb|EDK63809.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922976|gb|EDK74091.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|301799849|emb|CBW32423.1| topoisomerase IV subunit A [Streptococcus pneumoniae OXC141]
 gi|306408989|gb|ADM84416.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
          Length = 811

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 481/889 (54%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I   + I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E+         +++    F AT+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|194397352|ref|YP_002037490.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae G54]
 gi|194357019|gb|ACF55467.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae G54]
          Length = 823

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 487/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + G DFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGXDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E+         +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 715

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 716 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 757 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 804

Query: 886 AKDERV 891
             DE V
Sbjct: 805 ISDEEV 810


>gi|254820902|ref|ZP_05225903.1| DNA gyrase, A subunit [Mycobacterium intracellulare ATCC 13950]
          Length = 1258

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 283/778 (36%), Positives = 428/778 (55%), Gaps = 94/778 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     +DN + D    L A+ E ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQGIHDAYTTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DR 305
            SI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+S DR
Sbjct: 671  SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +VA +
Sbjct: 731  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR----------- 839

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 840  --AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RED+VVT++  
Sbjct: 885  DLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAREDVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT++G V++ KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDA---PYLVLATRNGLVKKTKLTDF 1061

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C+ + D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEALRPM-GRATS 1119

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D                    Y+  ++  R                   E
Sbjct: 1120 GVQGMRFNADD--------------------YLLSLNVVR-------------------E 1140

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            G               ++L  +  G+ KRT+  ++ +  R GKG+    V      G LV
Sbjct: 1141 GT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTVMYDRRRGRLV 1184

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                V+++ ++  ++  G +IR    ++R A R TKGV + +  ++  ++++ R  E+
Sbjct: 1185 GALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLAIARNAEA 1242



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 90/130 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 761  QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            QRR++  +  EI     D       + +G++++E   +L  +E  ++T++E G+ KRT +
Sbjct: 896  QRRIVHDELSEIVDKHGDERRTRIIAADGDVNDE---DLIAREDVVVTITETGYAKRTKT 952

Query: 815  YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
              +R   R GKG++   + + + +      F  + +D I+  + +G + R    E+  AS
Sbjct: 953  DLYRSQKRGGKGVQGAGLKQDDIVRHF---FVCSTHDWILFFTTQGRVYRAKAYELPEAS 1009

Query: 875  RATKG---VVIFSTAKDERVVSVERIRESE 901
            R  +G     + +   +ER+  V +IR  E
Sbjct: 1010 RTARGQHVANLLAFQPEERIAQVIQIRGYE 1039


>gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 822

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 288/751 (38%), Positives = 418/751 (55%), Gaps = 64/751 (8%)

Query: 8   SDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +DE + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+ 
Sbjct: 16  ADEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLR 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 76  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPP 135

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  + + + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVG
Sbjct: 136 AAMRYTESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I +P+ DLD LM+ + GPD PTG  I+G  GI++AYA GR
Sbjct: 196 MATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIVGLAGIRDAYANGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 256 GSFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDH 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++     
Sbjct: 376 RFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEH---- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 432 ----------------------FSLSETQTQYILDTPLRRLTRFDRIELESERDRLNAEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +  TPRRT ++E          L + D+ C    
Sbjct: 470 EELTAILESDTELRKLVSGELAAVAKKYGTPRRTVLLESADTPVAAIPLQVADDPC---- 525

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P +     + G   R+       D +      +    V   +S G
Sbjct: 526 --RVLLSSTGVIARTPGT--EPLQEGSAKRA-----KHDVIRSAVPATARGEVGAVTSAG 576

Query: 597 FVYKEKVWRLP-----IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            + +  V  LP      G     G  +   + L   E +  +     DESS     +   
Sbjct: 577 RLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTL--DESSPG---LAIG 631

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R  + D+   NR     + L   D I+ + E  T E D++  T   Q +RF  
Sbjct: 632 TAQGVVKR-VVPDY-PANREELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFQA 689

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           SA+R   GR + GV G+ LA G +V+S  +V
Sbjct: 690 SAVRP-QGRPAGGVAGVKLADGAKVLSFDVV 719


>gi|148988274|ref|ZP_01819721.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925955|gb|EDK77029.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 811

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 479/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    F AT+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|73916908|gb|AAZ93322.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    F AT+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|168485803|ref|ZP_02710311.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|221231636|ref|YP_002510788.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|183570981|gb|EDT91509.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|220674096|emb|CAR68614.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|301793991|emb|CBW36389.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV104]
          Length = 811

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 480/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    FA T+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|15902801|ref|NP_358351.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116515631|ref|YP_816238.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae D39]
 gi|15458351|gb|AAK99561.1| Topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116076207|gb|ABJ53927.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae D39]
          Length = 826

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 486/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 6   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 66  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 246 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 306 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R  ++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 366 FDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 414 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK    TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 460 RTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 520 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 567

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E+         +++    F AT+ G ++R 
Sbjct: 568 -------LADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRV 620

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 621 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 678

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 679 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 718

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 719 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 759

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 760 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 807

Query: 886 AKDERV 891
             DE V
Sbjct: 808 ISDEEV 813


>gi|153855241|ref|ZP_01996407.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
 gi|149752240|gb|EDM62171.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
          Length = 746

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 266/723 (36%), Positives = 411/723 (56%), Gaps = 29/723 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y KCA
Sbjct: 6   IIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IYDAL  MAQ++   ++L++G GNFGS++GD  AA RYTE RL
Sbjct: 66  RIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARL 125

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      L DL KD VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+IPTHN
Sbjct: 126 AKITQEAYLADLDKDIVDFIPNFDETEKEPVVLPVRIPNLLVNGAEGIAVGMATSIPTHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG  A + N +I    LM+ I+GPDFPTG +++ +  +   Y TG G I IRG  
Sbjct: 186 LGEVVDGVKAYMKNEEITTRQLMKYIKGPDFPTGGIVVNKDDLPEIYETGTGKIKIRGKV 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +E   G ++++V+TEIPY +  A +   L  +  LV  K+  DI D+ ++S ++G R+V
Sbjct: 246 EVEDMKGGKKRLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGIRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++A V F+ ++  R
Sbjct: 306 IDLKKGADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKRIIEAHVDFQFDMATR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + K LL K +D+  +  GL  A   +D ++ I+R S N + A+  LM         K   
Sbjct: 366 KYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSQNVKDAKACLMNGETENIKFK--- 422

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                SS +    G +  +E Q  AILE+RL +L GL  + ++ E      +I++  DIL
Sbjct: 423 -----SSISKKMAGMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLAKIEKYEDIL 477

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   +  +I ++L  +K E    RRT +      + +E  +  +++V  +   GY K V
Sbjct: 478 NNYDSMAAVIMEDLDRIKKEFARKRRTVVENAEEAVFEEKKVEEQEVVFLMDRFGYAKTV 537

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +S Y   +      +  ++                 +  F+  G +++ KV  +P G  
Sbjct: 538 DVSTYERNKEAADNENKYILH----------CMNTGKICIFTKDGKMHQVKVMDIPYGKF 587

Query: 612 QARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           + +G+ + NI + +   E I  I     D        ++FATK G +++ + ++F Q+ +
Sbjct: 588 RDKGQPIDNISNYDSTQEEIVYIC----DSEQMRYAKLLFATKQGMIKKVEGTEF-QVTK 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               A KL   DE++ ++  T+   I+L T  G  +RFP + +     + ++GVRGI L 
Sbjct: 643 RTITATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPAAEV-TEKKKGAIGVRGIRLK 701

Query: 731 KGD 733
           K D
Sbjct: 702 KDD 704


>gi|124021719|ref|YP_001016026.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962005|gb|ABM76761.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 829

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 275/726 (37%), Positives = 407/726 (56%), Gaps = 75/726 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S R  +++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G++TVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  PD+  D L+ +I GPDFPTG  IL  TGI   Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E     K    R  +VVTE+PYQ++KA  +EK+A+LV   +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A+ + +L  L+R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RRT + L K + R  V+ GL  A+  L  V+ +I+ + +   AR  LM +      
Sbjct: 363 LTVIRRTNHALGKTKTRLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQ------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLT L +  +R E   L  + ++
Sbjct: 417 --------------------LDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQGKQEQ 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM------------------- 527
              +L +R  +L ++ QEL  +K   + PRRTR+VEG  D+                   
Sbjct: 457 LQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQA 516

Query: 528 -----EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                 D   ++++D  V V     + R  L +  A + G       ++   +    L  
Sbjct: 517 LSALPSDGRILIQQDSQVKVMSPQILGR--LHLNEACKLGDGPSPARLILPIEPAPRLLA 574

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+ +  V              W      P +  + L   L   + E +  I P P D+  
Sbjct: 575 VTNNGRVALVR----------WEFAGQQPGSLERFLPGGL---EKETLINIFPLPVDQ-- 619

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
             NL +   +  G  +R  L + ++++      +KL     + S   C   +D++L + +
Sbjct: 620 --NLSLGLLSSDGRFKRLPLEEVMELSGRAATIVKLKDGVVLKSAFICKANDDVILASSI 677

Query: 703 GQCVRF 708
           G+ +R 
Sbjct: 678 GRVIRI 683


>gi|27262294|gb|AAN87428.1| DNA gyrase subunit A [Heliobacillus mobilis]
          Length = 639

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 272/725 (37%), Positives = 415/725 (57%), Gaps = 91/725 (12%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M  NIP HNL EVVD    +IDNP++  + LM+ I+GPDFPTG +I+GR GI+ AY TGR
Sbjct: 1   MGXNIPPHNLSEVVDAVFMMIDNPNVTTEDLMKSIKGPDFPTGGLIMGREGIRQAYLTGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+++R  + IEK +G + +I+V EIPYQVNKA +LE+IAELVR+KR+  I DLRDESDR
Sbjct: 61  GSVIMRAKARIEKMNGGKMRILVHEIPYQVNKAKLLERIAELVRDKRVDGITDLRDESDR 120

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G ++VIEL+R  +  V+LNQLY++T +Q  F VNM+AL    P+   L  I+  ++  +
Sbjct: 121 KGMQIVIELRRDVNPQVVLNQLYKHTQMQDTFGVNMLALVDNVPKVLNLRDIIYYYLEHQ 180

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++V+VRRT+Y L KA  RAH+L GL IA+ N+D ++ IIR S   + AR ++M       
Sbjct: 181 KDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSETEDVARSQMM------- 233

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL----TGLG-RDDIRNELNSL 480
                              G    SE Q +AIL++RL RL    TG   +  I++ LNS 
Sbjct: 234 -------------------GEFGFSEKQAQAILDMRLKRLVRNWTGKRLKKSIQSLLNSF 274

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
                   +   S   +L IIK+E+  +K +    RRT I  G  D + ED I  ED VV
Sbjct: 275 AYFRARNWN---SEKLVLDIIKKEIGEIKAKFADARRTEITAGAGDFDIEDLIAEEDAVV 331

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+ ++ Y+AQRRGGKG + +  +++DFV  LFI +TH  +LFF+  G VY+
Sbjct: 332 TITHNGYIKRLHVNTYKAQRRGGKGVTAMGTKEDDFVELLFITTTHHYLLFFTDKGKVYR 391

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K   +P  S  A+G A++N+L++   +++  ++P  E      + Y++ AT++G V++ 
Sbjct: 392 LKTHEIPEASRTAKGTAIVNLLNITGDDKVNAVIPVKE---FSKDQYLLTATRNGIVKKT 448

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  +    + G IA+ LD  DE++ V+    E+DILL T+ G  VRFP   +R   GR 
Sbjct: 449 VLQQYDSSRKEGLIALTLDDGDELIGVKLTDGESDILLATRNGMAVRFPEGDVREM-GRT 507

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GI L+K D V++M                                   + K+D  
Sbjct: 508 TRGVKGIELSKDDFVVAME----------------------------------TFKDDDK 533

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           ++                 +L ++E G GKRT+  ++R  +R GKGI +  +++  + G 
Sbjct: 534 ID-----------------LLMITESGMGKRTAVEEYRSQHRGGKGIISMRLTQ--KTGL 574

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +  +  V   D+++++S +G +IR+ V+EI   SR T+GV I     +++VV+V R+   
Sbjct: 575 MAGIKVVRPGDELMVISAEGVIIRLNVDEISRFSRVTQGVSIMKINPNDKVVAVARVAMR 634

Query: 901 EIVDE 905
           E  DE
Sbjct: 635 EEDDE 639


>gi|1122296|emb|CAA92430.1| DNA gyrase A subunit [Mycobacterium leprae]
 gi|1262357|emb|CAA94713.1| DNA gyrase A, and intein [Mycobacterium leprae]
          Length = 1273

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 281/774 (36%), Positives = 429/774 (55%), Gaps = 94/774 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR----------- 839

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                +++L+D             + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 840  --VGVVELLD-------------IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDA---PYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C  + D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATS 1119

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D+++S+                                            
Sbjct: 1120 GVQGMRFNADDRLLSL-------------------------------------------- 1135

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             N+  E        + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV
Sbjct: 1136 -NVVRE--------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDR--RRGSLV 1184

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R
Sbjct: 1185 GAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIAR 1238



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|149007201|ref|ZP_01830865.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
 gi|147761239|gb|EDK68206.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
          Length = 811

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 478/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R  L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQNWKNREFLVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRTSENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    FA T+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|15826871|ref|NP_301134.1| putative DNA gyrase subunit A [Mycobacterium leprae TN]
 gi|13092418|emb|CAC29514.1| putative DNA gyrase subunit A [Mycobacterium leprae]
          Length = 1249

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 281/774 (36%), Positives = 429/774 (55%), Gaps = 94/774 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR----------- 839

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                +++L+D             + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 840  --VGVVELLD-------------IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDA---PYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C  + D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATS 1119

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D+++S+                                            
Sbjct: 1120 GVQGMRFNADDRLLSL-------------------------------------------- 1135

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             N+  E        + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV
Sbjct: 1136 -NVVRE--------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDR--RRGSLV 1184

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R
Sbjct: 1185 GAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIAR 1238



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 304/896 (33%), Positives = 482/896 (53%), Gaps = 107/896 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W    +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR              
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR-------------- 709

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                 G++     +E       IL  S     KR       + N+  +   A  V+   
Sbjct: 710 ------GSLKRVSIEE-------ILATSR---AKRGLQVLRELKNKPHRVFLAGAVADQG 753

Query: 837 EIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 754 FVGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808


>gi|73916850|gb|AAZ93293.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 485/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|221229349|ref|YP_002502765.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
 gi|219932456|emb|CAR70099.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
          Length = 1249

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 281/774 (36%), Positives = 429/774 (55%), Gaps = 94/774 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR----------- 839

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                +++L+D             + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 840  --VGVVELLD-------------IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDA---PYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C  + D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATS 1119

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D+++S+                                            
Sbjct: 1120 GVQGMRFNADDRLLSL-------------------------------------------- 1135

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             N+  E        + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV
Sbjct: 1136 -NVVRE--------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDR--RRGSLV 1184

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R
Sbjct: 1185 GAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIAR 1238



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|13638291|sp|Q57532|GYRA_MYCLE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mle gyrA
            intein
          Length = 1273

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 281/774 (36%), Positives = 429/774 (55%), Gaps = 94/774 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR           
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR----------- 839

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                +++L+D             + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 840  --VGVVELLD-------------IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDA---PYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C  + D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATS 1119

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+     D+++S+                                            
Sbjct: 1120 GVQGMRFNADDRLLSL-------------------------------------------- 1135

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             N+  E        + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV
Sbjct: 1136 -NVVRE--------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDR--RRGSLV 1184

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R
Sbjct: 1185 GAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIAR 1238



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|149004065|ref|ZP_01828871.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|149021721|ref|ZP_01835752.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|147757966|gb|EDK64974.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147930182|gb|EDK81168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|301801679|emb|CBW34384.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV200]
 gi|327390206|gb|EGE88549.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA04375]
 gi|332076133|gb|EGI86599.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41301]
          Length = 811

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 479/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    FA T+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|116071803|ref|ZP_01469071.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
 gi|116065426|gb|EAU71184.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
          Length = 820

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 300/816 (36%), Positives = 456/816 (55%), Gaps = 77/816 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LL+++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  P +  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRQPSLSDERLLELIPGPDFPTGGEVLLSSGLQDTYLQGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E     K    R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR 
Sbjct: 243 GVAHTEEVQLGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLTGL ++ +R E+++L  E + 
Sbjct: 417 --------------------LDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL ++K    TPRRTR+VEG       D ++ E       +  
Sbjct: 457 LKLLLENRDQLLDAMVGELKTLKKRFSTPRRTRLVEG------GDALIAERAASQRPNTE 510

Query: 547 YVKRVPLSVYRAQRR---GGKGRSGVV---------MRDEDFVTD-------LFIVSTHT 587
            +++  L+      R      G+  +V           D   ++D       +  +    
Sbjct: 511 LLRQQALAALPGDGRLLIQADGQVKIVTPQVLGRLHFGDPCPLSDAPSPAQVILPIEPPP 570

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L  S+ G V   + W      P    + L + L   +GE I  + P P  ESS  +L 
Sbjct: 571 RLLAISANGRVALVR-WEFAGQQPGVLERFLPSGL---EGEPIVALAPLPMQESSDLSLG 626

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ +      +R  L++ + ++      +KL    ++ +   C + +D++L + +G+ +R
Sbjct: 627 LLSSDGR--FKRLPLAEVLDLSGRATSVVKLKDGVQLKAAVICREHHDLILVSDIGRMLR 684

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISM------AIVLHADADYDERICYMKHMSA 760
            PI+  +    GR + G   + L  G+Q+I         +VL +      RI      S+
Sbjct: 685 LPINEDVLPLMGRLAQGPMTMRLLPGEQLIGALCPLEPTVVLVSGQGQFARIDLSSIRSS 744

Query: 761 QRR-------LISGDTEEITSLKNDSSVEGNISEER 789
           QR         I+ DT+ IT +   + + G +S E+
Sbjct: 745 QRGDLGSMAIQITSDTDRITGMTEANGLIGIVSTEQ 780


>gi|168493009|ref|ZP_02717152.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577053|gb|EDT97581.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
          Length = 811

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 479/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRTSENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    FA T+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|73916874|gb|AAZ93305.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916924|gb|AAZ93330.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 309/907 (34%), Positives = 487/907 (53%), Gaps = 128/907 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIE 313
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  I A++RDESDR G R+ IE
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAAEVRDESDRDGLRIAIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 301 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++          
Sbjct: 361 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD---------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 410 ---------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR 
Sbjct: 455 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIG 609
               + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI 
Sbjct: 515 SPRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIH 562

Query: 610 SPQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRR 659
                   L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R
Sbjct: 563 E-------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKR 615

Query: 660 NKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V
Sbjct: 616 VERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV 674

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G  + GV+ ++L K D V+    + +  + Y         +  QR           SL
Sbjct: 675 -VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSL 713

Query: 776 KNDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGK 825
           K   S+E  ++  R +       ELK K   +     V+E+GF                 
Sbjct: 714 KR-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF----------------- 755

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFS 884
                       +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  
Sbjct: 756 ------------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISD 802

Query: 885 TAKDERV 891
           T  DE V
Sbjct: 803 TISDEEV 809


>gi|111657636|ref|ZP_01408369.1| hypothetical protein SpneT_02001168 [Streptococcus pneumoniae
           TIGR4]
          Length = 817

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 307/902 (34%), Positives = 484/902 (53%), Gaps = 127/902 (14%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK
Sbjct: 181 IDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A
Sbjct: 241 LKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   
Sbjct: 301 NTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKE 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++               
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD--------------- 404

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT      ++ E   L  +I     I+     + 
Sbjct: 405 ----------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR     +
Sbjct: 455 NLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQAR 614
            A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI      
Sbjct: 515 AASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE---- 558

Query: 615 GKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKLSD 664
              L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R +  +
Sbjct: 559 ---LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKE 615

Query: 665 FIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  
Sbjct: 616 FTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAK 673

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L K D V+    + +  + Y         +  QR           SLK   S
Sbjct: 674 AAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLKR-VS 712

Query: 781 VEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +E  ++  R +       ELK K   +     V+E+GF                      
Sbjct: 713 IEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF---------------------- 750

Query: 831 DVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                  +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE
Sbjct: 751 -------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDE 802

Query: 890 RV 891
            V
Sbjct: 803 EV 804


>gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 800

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 261/730 (35%), Positives = 427/730 (58%), Gaps = 40/730 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TV F  NYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNP+I +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+VVTE+PY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 TEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVVV RTK+
Sbjct: 305 KEANSEAIKNYLFKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVVNRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   ++ Q  AI+ L+L RLT     +++NE   L   IKE   IL +  
Sbjct: 408 ---------ATYGFTDAQAEAIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    T R + I   + +++ D++ +V  ED++++V+  GY+KR   
Sbjct: 459 ALLTVIKNELKDIRKRFKTERLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G S + ++  D +     V+T  ++L F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  ++++ + E I  +     +++     + + AT++G ++++    F +  R  K
Sbjct: 574 LGQHVSQLVAIEEDEYIINVY---NEKNFQQEAFYIMATRNGMIKKSHAGLF-KTTRYTK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +AMK+  +DEI+SV+  T++  I + T  G  + +  + +    G  + GV+ I+L  
Sbjct: 630 PLVAMKVKPQDEIISVQRLTEDQIITVLTHKGMSLTYNTNELS-DTGLRAAGVKSINLKV 688

Query: 732 GDQVISMAIV 741
            D V+   +V
Sbjct: 689 EDFVVMTEVV 698



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           SS+E  I+E +  +  +   E  I++V+ +G+ KRTS+  F  S  S  G++  D     
Sbjct: 481 SSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLKQGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
               L+    VN  D I++ ++KG  + +PV+++
Sbjct: 536 ---RLLKYQEVNTQDTILVFTNKGRYLFIPVHKL 566


>gi|73916900|gb|AAZ93318.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 485/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 713

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 714 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 754

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 755 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 802

Query: 886 AKDERV 891
             DE V
Sbjct: 803 ISDEEV 808


>gi|149010515|ref|ZP_01831886.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|303254051|ref|ZP_07340168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|303260743|ref|ZP_07346702.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303263101|ref|ZP_07349031.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265021|ref|ZP_07350935.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|303267482|ref|ZP_07353333.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|303269834|ref|ZP_07355580.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|307127595|ref|YP_003879626.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 670-6B]
 gi|147764996|gb|EDK71925.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|302598987|gb|EFL66016.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|302635754|gb|EFL66259.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638111|gb|EFL68587.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302640631|gb|EFL71032.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|302642988|gb|EFL73284.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|302645381|gb|EFL75614.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|306484657|gb|ADM91526.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332077267|gb|EGI87729.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17545]
          Length = 811

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 305/889 (34%), Positives = 479/889 (53%), Gaps = 127/889 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV
Sbjct: 68  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +EQIV+TEI
Sbjct: 188 KIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++LN L++YT
Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R H++ GL 
Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          +E
Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461

Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             TPR + +      ++++    I  ED  V+V+  GY+KR     + A      G+   
Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             RD+D +  +F+ S  T+  +L F+SLG V    ++R PI         L +I   + G
Sbjct: 519 --RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE-------LADIRWKDIG 562

Query: 628 ERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRNKLSDFIQI----NRSGK 673
           E ++ TI  F  +E          +++    FA T+ G ++R +  +F       ++S K
Sbjct: 563 EHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A   D  D+I++V    + +D++L ++ G  +RF I  + V  G  + GV+ ++L K D
Sbjct: 623 YAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KED 679

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791
            V+    + +  + Y         +  QR           SLK   S+E  ++  R +  
Sbjct: 680 DVLQSGFICNTSSFY---------LLTQR----------GSLKR-VSIEEILATSRAKRG 719

Query: 792 -----ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                ELK K   +     V+E+GF                             +G   +
Sbjct: 720 LQVLRELKNKPHRVFLAGAVAEQGF-----------------------------VGDFFS 750

Query: 844 VFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 751 T-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798


>gi|73916854|gb|AAZ93295.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 293/845 (34%), Positives = 467/845 (55%), Gaps = 82/845 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG  +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGAFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 409 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 562

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E          +++    FA T+ G ++R 
Sbjct: 563 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRV 615

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 616 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 673

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEE--- 771
            G  + GV+ ++L K D V+    + +  + Y   +R   +K +S +  L +   +    
Sbjct: 674 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFYLLTQR-GSLKRVSIEEILATSRAKRGLQ 731

Query: 772 -ITSLKNDS---------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            +  LKN           + +G + +    E+ + +Q +L  S KG    +   D  +S 
Sbjct: 732 VLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQSNKGIIYESRLQDLNLSE 791

Query: 822 RSGKG 826
           R+  G
Sbjct: 792 RTSNG 796


>gi|220912389|ref|YP_002487698.1| DNA topoisomerase IV subunit A [Arthrobacter chlorophenolicus A6]
 gi|219859267|gb|ACL39609.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 836

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 287/755 (38%), Positives = 408/755 (54%), Gaps = 92/755 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++ +VK A
Sbjct: 20  IVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+AAIYDA+ RMAQD+SLRL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 80  RVVGEVMGKLHPHGDAAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L + L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 APAALTLTNHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +I NPD  L+ LM  + GPD P+G  I+G  GI++AYATGRGS   R    
Sbjct: 199 VEVISAARHLIANPDATLEDLMRFVPGPDLPSGGRIVGLDGIRDAYATGRGSFKTRAKVE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR+ G R+VIEL
Sbjct: 259 VEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRKHGLRLVIEL 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G +   +L QLYRYT ++  F +N V L   +P+   L+ +L  +V  R +VV RRT 
Sbjct: 319 KNGFNPTAVLQQLYRYTPMEDSFGINNVTLVDGQPQTLGLVALLSVYVNHRIDVVRRRTI 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM                
Sbjct: 379 FRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARERLM---------------- 422

Query: 435 DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                      ++Y L+E+Q   ILELRL +LT   R ++  E + L  EI E   IL+S
Sbjct: 423 -----------SIYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLRREIAELEAILNS 471

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG----------------------LLDMEDED 531
              L  ++  EL ++ +E  TPRRT ++E                        L++ D+ 
Sbjct: 472 EELLRSLVSDELEAISEEHGTPRRTILLESEAVSPTVAAELAGSKKGKPAPLALEIADDP 531

Query: 532 CIVREDMVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           C      ++T S  G + R     PL+    + +             D  T +   S   
Sbjct: 532 CWA----ILTAS--GQIGRTSNQEPLAEAGPRNK------------HDVFTSVVKTSARG 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSP------QARGKALINILSLNQGERITTIMPFPEDES 641
            +   +S G + + +V  +P+  P       A G    + L+L +GE +    P  E   
Sbjct: 574 EIAAITSQGRMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFAPLDE--- 630

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTT 700
                 +   T  G V+R  +     +NR     + L  +D ++ V     ++ +++  T
Sbjct: 631 -----VLAIGTSQGVVKR--VQPEYPLNREDWEVIALKDKDFVVGVAPAAADDTELVFLT 683

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              Q ++F  SA+R   GR + G+ GI LA GD+V
Sbjct: 684 AQAQLLKFAASAVRP-QGRTAGGMAGIKLAAGDRV 717


>gi|15672966|ref|NP_267140.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491485|ref|YP_003353465.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|12723927|gb|AAK05082.1|AE006332_11 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375203|gb|ADA64716.1| Topoisomerase IV, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 824

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 270/733 (36%), Positives = 423/733 (57%), Gaps = 42/733 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R   
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IEL
Sbjct: 243 DIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+V+R++
Sbjct: 303 KKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIVKRSQ 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA  R H++ GL   V+ LDEVV  IR S               N +D K+ I + 
Sbjct: 363 FDLNKAEKRLHIVEGLIRMVSILDEVVATIRASE--------------NKADAKENIKV- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++  
Sbjct: 408 -----------SFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  VK +   PRR+ + + +  +++E  + IV ED VV+V+  GY+KR  
Sbjct: 457 RTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + +      G+     RD+D +       T   +L F++LG V    +  L     +
Sbjct: 517 PRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   LS  +  E++  +     DE +  NL VV  T++G ++   R   S +   
Sbjct: 572 DIGEHLSQSLSNFSADEKVIFVQIV--DEFAGENLLVV--TRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + T  Q  D++L ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGEDDEIVLITPVQFADLMLISENGYALRFNLDDVPVLGAR-AAGVKAMN 686

Query: 729 LAKGDQVISMAIV 741
           L  GD++ S   V
Sbjct: 687 LKNGDKIKSAFFV 699


>gi|291539735|emb|CBL12846.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis XB6B4]
          Length = 749

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 270/742 (36%), Positives = 427/742 (57%), Gaps = 37/742 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++
Sbjct: 4   DMNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYD 63

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  AA 
Sbjct: 64  KPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAM 123

Query: 129 RYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           RYTE RLQK      L+DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAVGM 
Sbjct: 124 RYTEARLQKITQEAYLEDLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMT 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG G 
Sbjct: 184 TSIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTGMGK 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESD 304
           I IRG   +EK  G ++++V+TEIPY +   N    L  I  LV  K+  DI D+ ++S 
Sbjct: 244 IKIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSS 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           ++G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  V F
Sbjct: 304 KEGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHHVNF 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L       
Sbjct: 364 QYELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACL------T 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             I D I+   + S    +   +  +E QT AILE+RL +L GL  + +  + +     I
Sbjct: 418 DGITDNINFKSEQSKRDAA--KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNI 475

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVS 543
            +  DIL SR+ +  +I +EL S K E   PR+T +++ L +   E+  + E D+V  + 
Sbjct: 476 AKYEDILGSRAAMAKVIIKELESFKKEYAKPRKT-VIDNLEEAVVEEKKIEEMDVVFLMD 534

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K V ++ Y   +      +  ++  ++  TD         +  F++ G ++  KV
Sbjct: 535 RFGYAKTVDVATYERNKEAANTENRYILTCKN--TD--------KICIFTNKGQMHLLKV 584

Query: 604 WRLPIGSPQARGKALINILSLNQGER----ITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             LP G  + +G  + N+ + N  E     IT +       ++ ++  V+F TK   ++ 
Sbjct: 585 LDLPYGKFRDKGTPIDNLSNYNSSEENFVYITNL-------AAISHSQVLFGTKSAMLKV 637

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              S+F  + +    A KL+  DE++ V+    E  +++ ++    +R  IS+I     +
Sbjct: 638 VDGSEF-DVAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPE-KKK 695

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
            +VGVRG+ L  GD + ++ ++
Sbjct: 696 GAVGVRGMKLGAGDALAAIYLL 717


>gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund
           17B]
 gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
          Length = 969

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 282/742 (38%), Positives = 426/742 (57%), Gaps = 52/742 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV +G +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  R 
Sbjct: 191 HNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILIGKNSLRSAYESGVGKVAYRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGY 308
            ++IEK    R  I +TE PY+ NKA +L+ I+E+       K +  I+D+RDESDR G 
Sbjct: 251 KTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRNGI 310

Query: 309 RVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIELK+ A   SA+ IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V  +
Sbjct: 311 RAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKDMIRHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RR++  L  A+ R H++ G   A+  LDEV+  IR S + + A   L+++     
Sbjct: 371 KEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEK----- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +  Q +AILEL L RLTGL       E   L   IK
Sbjct: 426 ---------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE----GLLDMEDEDCIVREDMVVT 541
               ILS+   LL +IK EL  + D+    R+T I+E      +D+  E+ I+ E++++T
Sbjct: 465 RLEKILSNEKELLKVIKFELKEISDKYGDERKTHIIEDDTKSKIDV--EELIIVEEVMIT 522

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++KR+P+  Y    R       +  R+ D +  L   +T  S+L F++ GF+Y+ 
Sbjct: 523 LSKEGFIKRIPVKNY---IRSNSNPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQV 579

Query: 602 KVWRLPIGSPQARGKALINIL-SLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K   +P    + +G+ L  I+ SLN + E+I  ++    D  + N ++  F TK G ++ 
Sbjct: 580 KGINIPELKWKEKGERLDTIIKSLNLEEEKIVEVISV--DSFNPNKIF-RFITKSGGIKE 636

Query: 660 NKLSDFIQINRSGKI-AMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRV-F 716
           + L  F      GK+ A+KL  +D +L+V+    +EN+  L  K    + F I    +  
Sbjct: 637 SSLDKF--ETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLELEFTIEVPELEN 694

Query: 717 AGRNSVGVRGISLAKGDQVISM 738
             RN + ++  +L+  D+++ +
Sbjct: 695 VPRNILPIQLFNLSIDDEIVEV 716



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCT-QENDILLTTKLGQCVRFP 709
           +K G V++  L++F  ++   +   KL + D E++SV+       ++++ TK G  +RFP
Sbjct: 817 SKKGLVKKTLLNEF-SVDTQKQFFYKLKTEDDEVISVDINNITLGNLVIITKKGMAIRFP 875

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +  +    G+ + GV GISL + D+VI  A V
Sbjct: 876 VENVNSM-GKVASGVTGISLREEDEVIFGAYV 906


>gi|322517178|ref|ZP_08070061.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
 gi|322124237|gb|EFX95753.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
          Length = 818

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 279/754 (37%), Positives = 423/754 (56%), Gaps = 71/754 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSCT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE + L  +I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEEDDLREQIATLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR  
Sbjct: 457 RTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVWRLPI 608
              + A      G+     RD+D   DL +V    +T   ++F +    +Y+      PI
Sbjct: 517 PRSFNASMIDEVGK-----RDDD---DLILVQQAKTTQHLLIFTNQANVIYR------PI 562

Query: 609 GS-PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFATKHGNVR 658
              P  R K L        GE ++ TI  F +DE          +     + ATK G ++
Sbjct: 563 HELPDIRWKDL--------GEHLSQTITNFSKDEEVLYAEILDDFETGTYLAATKLGQIK 614

Query: 659 RNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R +  +F       ++S K A   D  D I++V T  Q +DI++ T+ G  +RF    + 
Sbjct: 615 RFERKEFTPWRTYKSKSVKYAKLKDDSDFIVTV-TPIQLDDIMIITQKGYALRFNADEVP 673

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
           V  G  + GV+ I+L K D  +    V +  + Y
Sbjct: 674 V-VGAKAAGVKAINL-KDDDTVQAVFVANTQSFY 705


>gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 971

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 285/699 (40%), Positives = 409/699 (58%), Gaps = 52/699 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y
Sbjct: 11  KDNNIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHMLKAFPDRPY 70

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++Y+A+  +AQD+S RL LIEG GN+GS+DGD  AA RYT
Sbjct: 71  YKSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDGDSAAAMRYT 130

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP
Sbjct: 131 EARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNIP 190

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV DG +A IDN DI    LME ++GPD PTG +++G   + +AY TG G +  R
Sbjct: 191 PHNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILIGEKSLLSAYETGEGKVPYR 250

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             ++IEK    R  IV+TE PY+ NK+ +L+ I+E+  +KR    +  I D+RDESDR G
Sbjct: 251 AKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITDIRDESDRNG 310

Query: 308 YRVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+     +A+ IL  L++ T LQ   S NMVAL+  KPE   L  I+K +V  
Sbjct: 311 IRAVIEFKKSVDEDNAEKILKYLFKKTDLQCNISFNMVALSNGKPETMGLKTIIKHYVEH 370

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++E+V RRTK  L+ A  R H++ G   A+  LDEV+  IR S + +           NA
Sbjct: 371 QKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKK-----------NA 419

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S+     +LID   +T          E+Q +AILEL L RLTGL     + E   L   I
Sbjct: 420 SE-----NLIDKFGFT----------ELQAQAILELMLYRLTGLEIKVFQKEYAELEKLI 464

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
           K+   IL+S   LL +IK EL  V D+    RRT I+  +    ++ E+ IV E++++TV
Sbjct: 465 KKLEKILASEKELLRVIKTELKEVCDKYSDARRTTIISDDTKSKIDVEELIVVEEVMITV 524

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ G++KR+PL  Y    R       +  R+ D++  L   +T  ++L F++ G++Y+ K
Sbjct: 525 SNDGFIKRIPLKNY---NRSNSDPDDIEYREGDYLKYLISSNTKDNLLIFTNAGYMYQTK 581

Query: 603 VWRLPIGSPQARGKALINIL-SLN-QGERITTIMPFPEDESSWNNLY----VVFATKHGN 656
              +P    + +G+ L  ++ SLN   E+I  I+       S +N        F T  G 
Sbjct: 582 GINIPELRWKEKGERLDGVIKSLNLDDEKIVGII-------SLDNFTPGKGFRFITSGGG 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
           ++ + L  F Q + +   A+KL   DE+++V     E++
Sbjct: 635 IKISGLDKF-QTSYTKLQALKLRDTDELINVSLIDLEDE 672



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 22/168 (13%)

Query: 579 DLFIVSTHTS--VLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGE-RITTIM 634
           D   V T ++  +L F++ GF+YK  V+ +  I +        I  +  N+   RI ++ 
Sbjct: 747 DYLKVKTKSTEQLLIFTNTGFIYKVPVFMMKNIFTKDMSIDQFIGKIGRNEKIIRIASVA 806

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSD-----FIQINRSGKIAMKLDSRDEILSVET 689
            + ED   +        TK G V++  L +     F Q     K        DE++SV+ 
Sbjct: 807 SYDEDRCIYT------FTKTGMVKKTLLKEYEGEFFKQPCHKFKYEF-----DELVSVDI 855

Query: 690 -CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                  +++ TK G  +RFP+  +    G+ + GV GISL   D+VI
Sbjct: 856 DKISLGYLIMVTKKGMAIRFPVENVNSM-GKIASGVTGISLKDDDEVI 902


>gi|256847178|ref|ZP_05552624.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715842|gb|EEU30817.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 843

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 275/764 (35%), Positives = 438/764 (57%), Gaps = 49/764 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++   M   +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K A
Sbjct: 6   IEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE RL
Sbjct: 66  KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L D+ KDTV+   N+D + +EP VL AR PN+ VNG  GI+ G AT IP HNL
Sbjct: 126 SKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++   + ++ +P+  LD LM  + GPDFPTG +I G  GI+ AY TGRG +++R  + 
Sbjct: 186 RELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGIIQGVDGIRKAYETGRGRVILRANTT 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G R+QI+VTEIPY VNKA ++++I +L   K++  I++ RDE+DR G R+ IELK
Sbjct: 246 IEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLRIAIELK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A A+ ILN L + T LQ  ++ NMVA++  +P R  L   LK+++AF++E++ RRT++
Sbjct: 306 RNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRVGLKHYLKSYLAFQQEIITRRTQF 365

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ R H++ GL  A++ LD+V++ IR S N    R++  Q            +L++
Sbjct: 366 NLHKAQTRLHIVEGLIKALSILDQVIKTIRASKN----RKDATQ------------NLVN 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +  +T          + Q  AI+ L+L RLT     D+R+E   L   I E   IL+ ++
Sbjct: 410 EYQFT----------QPQAEAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILNDQN 459

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +E  ++  +  + R+T+I + +  L ++ +  +  E++VV VSH GY+KR  L
Sbjct: 460 ELNRVLVKEFKAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSL 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++A      G     +R++D+   +   ST   +  F++ G V    V  L     + 
Sbjct: 520 RSFKASVLEENG-----LREDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKE 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--- 670
            G+ +   + L   E I   + F   E       ++F+T  G V++  + D    +R   
Sbjct: 575 TGEHISQSIGLADDEEIIKALIFENLELPGT---MIFSTSDGQVKQTTIQDLKPGSRYKS 631

Query: 671 SGKIAMKL-DSRDEILSVETC-TQENDILLT--TKLGQCVRFPISAIRVFAGRNSVGVRG 726
              + MKL D+   +++ E    Q  ++ LT  +K G  +RF ++ +    G  + GVR 
Sbjct: 632 RASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHGYGLRFDVAEVPT-QGTRTAGVRA 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           I+L   D+++++  V  AD   D+R+  M    A + + + + E
Sbjct: 691 INLKDDDELVNL--VQTAD---DDRLAIMTQRGAFKEMRANELE 729



 Score = 38.5 bits (88), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVS 857
           +  +S+ G+G R     F ++    +G R   V  IN  +   LV +    D+D++ +++
Sbjct: 661 LTAISKHGYGLR-----FDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTADDDRLAIMT 715

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +G    +  NE+ + SRA +GV++    K
Sbjct: 716 QRGAFKEMRANELEVGSRARRGVLVLHKLK 745


>gi|312277995|gb|ADQ62652.1| DNA topoisomerase IV (Subunit C) [Streptococcus thermophilus ND03]
          Length = 818

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 276/741 (37%), Positives = 420/741 (56%), Gaps = 70/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE  +L  +I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR  
Sbjct: 457 RTLFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVWRLPI 608
              + A +    G+     RD+D   DL +V    +T   ++F +    +Y+      PI
Sbjct: 517 PRSFNASKIEEVGK-----RDDD---DLILVQQAKTTQHLLIFTNQANVIYR------PI 562

Query: 609 GS-PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFATKHGNVR 658
              P  R K L        GE ++ TI  F +DE          +     +  TK G ++
Sbjct: 563 HELPDIRWKDL--------GEHLSQTITNFSKDEEVLYAEILDDFETGTYLATTKLGQIK 614

Query: 659 RNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R +  +F       ++S K     D  D I++V T  Q +DI++ T+ G  +RF    + 
Sbjct: 615 RFERKEFTPWRTYKSKSVKYGKLKDESDVIVTV-TPIQLDDIMIITQKGYALRFNADEVP 673

Query: 715 VFAGRNSVGVRGISLAKGDQV 735
           V  G  +VGV+ I+L   D+V
Sbjct: 674 V-VGAKAVGVKAINLKDDDKV 693


>gi|55820668|ref|YP_139110.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMG
           18311]
 gi|55822559|ref|YP_141000.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|55736653|gb|AAV60295.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus LMG
           18311]
 gi|55738544|gb|AAV62185.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus
           CNRZ1066]
          Length = 839

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 276/741 (37%), Positives = 420/741 (56%), Gaps = 70/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 24  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKS 83

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 84  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 143

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 144 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 203

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  +
Sbjct: 204 LAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRT 263

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 264 EIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIEL 323

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K
Sbjct: 324 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARSK 383

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 384 FDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDA-KENLKVSYD----------- 431

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE  +L  +I     I+   
Sbjct: 432 --------------FSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDE 477

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR  
Sbjct: 478 RTLFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTS 537

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVWRLPI 608
              + A +    G+     RD+D   DL +V    +T   ++F +    +Y+      PI
Sbjct: 538 PRSFNASKIEEVGK-----RDDD---DLILVQQAKTTQHLLIFTNQANVIYR------PI 583

Query: 609 GS-PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFATKHGNVR 658
              P  R K L        GE ++ TI  F +DE          +     +  TK G ++
Sbjct: 584 HELPDIRWKDL--------GEHLSQTITNFSKDEEVLYAEILDDFETGTYLATTKLGQIK 635

Query: 659 RNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R +  +F       ++S K     D  D I++V T  Q +DI++ T+ G  +RF    + 
Sbjct: 636 RFERKEFTPWRTYKSKSVKYGKLKDESDVIVTV-TPIQLDDIMIITQKGYALRFNADEVP 694

Query: 715 VFAGRNSVGVRGISLAKGDQV 735
           V  G  +VGV+ I+L   D+V
Sbjct: 695 V-VGAKAVGVKAINLKDDDKV 714


>gi|33862278|ref|NP_893838.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640391|emb|CAE20180.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 829

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 279/736 (37%), Positives = 413/736 (56%), Gaps = 95/736 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S R  +++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G++TVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  PD+  D L+ +I GPDFPTG  IL  TGI   Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E     K    R  +VVTE+PYQ++KA  +EK+A+LV   +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A+ + +L  L+R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RRT + L K + R  V+ GL  A+  L  V+ +I+ + +   AR  LM +      
Sbjct: 363 LTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQ------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLT L +  +R E   L  + ++
Sbjct: 417 --------------------LDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQ 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R  +L ++ QEL  +K   + PRRTR+VEG  D+              V+   
Sbjct: 457 LQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDL--------------VAERA 502

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
             +R    V R Q        G ++  +D         +   V+    LG ++  +  +L
Sbjct: 503 ANQRPNAEVQRQQALSALPSDGRILIQQD---------SQVKVMSPQILGRLHLNEACKL 553

Query: 607 PIGSPQARGKALIN----ILSL-NQG---------------------------ERITTIM 634
             G   AR    I     +L++ N G                           E +  I 
Sbjct: 554 SDGPSPARLILPIEPAPRLLAVTNNGRVALVRWEFAGQQPGSLERFLPGGLEKETLINIF 613

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQ 692
           P P D+    NL +   +  G  +R  + + +++  SG+ A  +  +D ++  S   C  
Sbjct: 614 PLPVDQ----NLSLGLLSSDGRFKRLPIEEVMEL--SGRAATIVKLKDGVILKSAFICKA 667

Query: 693 ENDILLTTKLGQCVRF 708
            +D++L + +G+ +R 
Sbjct: 668 NDDVILASNIGRVIRI 683


>gi|309807859|ref|ZP_07701791.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
 gi|308168961|gb|EFO71047.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
          Length = 662

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 270/740 (36%), Positives = 430/740 (58%), Gaps = 86/740 (11%)

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           +PVVL AR P +LVNG  GIAVGM TNIP HNL E++ G   +++NPD+ +  LM  I G
Sbjct: 4   KPVVLPARVPALLVNGVSGIAVGMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITG 63

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTG +I+GR+GI  AY TG+G+IV+R  ++I+     RE+I+++EIPY VNKA +++
Sbjct: 64  PDFPTGGIIMGRSGILRAYKTGKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVK 123

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           KIA+L R+K +  I  ++DESD++G R+ I+++R ASA V+LN L++ T LQS F VNMV
Sbjct: 124 KIADLARDKVVDGITGIQDESDQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMV 183

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           A+    P    L  IL+ ++A +E ++ RRTKY L KA  RAH++ GL IA+ ++DE+++
Sbjct: 184 AIVDGSPHVLNLKQILQYYLAHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIK 243

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           IIR S N + A+ +L+ R                            L + Q +AIL++RL
Sbjct: 244 IIRGSKNSDIAKDQLITRFG--------------------------LDDRQAQAILDMRL 277

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL RD +  E   L  +I +  DIL+   R+  II  ELL ++      RRT I +
Sbjct: 278 VRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDERRTEISD 337

Query: 523 G-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
             ++ ++DED I ++++++T++H GY+KR+P   ++ Q RGG+G  G+ ++++DF+  L 
Sbjct: 338 SEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLI 397

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V+TH  +LFF++ G VY +K + +P     A+G  +IN++ L +GE++  ++    +++
Sbjct: 398 YVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT 457

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
              N Y++F TK+G V+R  +S+F  I RSG IA+ L   DE+ +V       +IL+ T+
Sbjct: 458 ---NKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQNILIGTR 514

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           LG  V F  + +R   GR + GVRGI L   D V+  +IV     D+ E           
Sbjct: 515 LGYAVIFNENEVRTM-GRVASGVRGIKLRANDYVVGSSIV----DDHSE----------- 558

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +L +SEKG+GKRT + ++ I +
Sbjct: 559 --------------------------------------VLVISEKGYGKRTLASEYPIKS 580

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R   G++  +V++ N  G LV V  V+ ++ ++L++D G +IR+ V+ +    RAT GV 
Sbjct: 581 RGCMGVKTANVTEKN--GPLVGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVR 638

Query: 882 IFSTAKDERVVSVERIRESE 901
           +    +  +V S+ R++  +
Sbjct: 639 LIKLDQGTKVASLTRVKSED 658


>gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
 gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
          Length = 808

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 272/741 (36%), Positives = 425/741 (57%), Gaps = 45/741 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I  L   K++  I+++RDESDR+G RVVI
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLRVVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++                +
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKK----------------N 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ + S+T          E Q  AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 408 LVSEFSFT----------EAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I + +  L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF----- 665
            +  G+ L   + L   E I     F   E+   +   + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLGNDEYILNAFVF---ENIDQDAKFLIATKEGYIKQVKLADLKPGRT 629

Query: 666 IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +   S  I +K D  DE++SV    + ++ +   +  G  +++ +  +    G  + GV
Sbjct: 630 YKTRASRYIKLKTDV-DEVISVSQVESDKSQVFCASYTGYGLKYSLDEVPT-NGVLAAGV 687

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + + L + D + ++ +V  +D
Sbjct: 688 KCMDL-RDDTLANVILVSESD 707


>gi|326406528|gb|ADZ63599.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 840

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 269/733 (36%), Positives = 421/733 (57%), Gaps = 42/733 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R   
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IEL
Sbjct: 243 DIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+V+R++
Sbjct: 303 KKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIVKRSQ 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                 
Sbjct: 363 FDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                + G       +E Q  AI+ L+L RLT      ++NE   L  +I E   I++  
Sbjct: 406 ---KVSFG------FTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  VK +   PRR+ + + +  +++E  + IV ED VV+V+  GY+KR  
Sbjct: 457 RTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + +      G+     RD+D +       T   +L F++LG V    +  L     +
Sbjct: 517 PRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   LS  +  E++  +     DE +  NL VV  T++G ++   R   S +   
Sbjct: 572 DIGEHLSQSLSNFSADEKVIFVQIV--DEFAGENLLVV--TRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + T  Q  D++L ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGEDDEIVLITPVQFADLMLISENGYALRFNLDDVPVLGAR-AAGVKAMN 686

Query: 729 LAKGDQVISMAIV 741
           L  GD++ S   V
Sbjct: 687 LKNGDKIKSAFFV 699


>gi|260435822|ref|ZP_05789792.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
 gi|260413696|gb|EEX06992.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
          Length = 822

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 280/750 (37%), Positives = 428/750 (57%), Gaps = 64/750 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVEPIALHREMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  +L+++G+DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+G +A+I  P++  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVEGLIALIRKPELSDEKLLELIPGPDFPTGGEVLISSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E     K    R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ FRE
Sbjct: 303 GMRVVVELRRDADPENVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQTFLDFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLISALNNLQAVIAMIQEANDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL+ L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELDELRAERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL ++K    TPRRTR+VEG       D ++ E       +  
Sbjct: 457 LKLLLDNRDQLLDAMVTELKALKKRFSTPRRTRLVEG------GDALMAERAASQRPNTE 510

Query: 547 YVKRVPLSVYRAQRR---GGKGRSGVV---------MRDEDFVTD-------LFIVSTHT 587
            +++  L+      R      G+  +V         + D   + D       +  +    
Sbjct: 511 LLRQQALAALPGDGRVLIQADGQVKIVTPQVLGRLHLNDPCPIGDAPSPARVILPIEPPP 570

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L  S+ G + + + W      P    + L   L    G+ I +++  P    + +NL 
Sbjct: 571 RLLAVSARGRIAQVR-WEFAGQQPGPIDRFLPTGLD---GDPIVSLLSLP--SQNIDNLS 624

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   +  G  +R  LS+ + ++      +KL    E+ S   C  +  + L + +G+ +R
Sbjct: 625 LGLLSSDGRFKRLPLSEIVDLSGRATSVLKLKEGVELNSAVICRDQGTLALISDIGRLLR 684

Query: 708 FPISAIRV-FAGRNSVGVRGISLAKGDQVI 736
             ++   +   GR + G   + L  G+ ++
Sbjct: 685 LRVTEDSLPLMGRLAQGPMTMRLLPGEHIV 714


>gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
 gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
          Length = 800

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/730 (35%), Positives = 427/730 (58%), Gaps = 40/730 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TV F  NYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNP+I +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+VVTE+PY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 TEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVVV RTK+
Sbjct: 305 KEANSEAIKNYLFKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVVNRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   ++ Q  AI+ L+L RLT     +++NE   L   IKE   IL +  
Sbjct: 408 ---------ATYGFTDAQAEAIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I   + +++ D++ +V  ED++++V+  GY+KR   
Sbjct: 459 ALLTVIKNELKDIRKRFKSERLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G S + ++  D +     V+T  ++L F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  ++++ + E I  +     +++     + + AT++G ++++    F +  R  K
Sbjct: 574 LGQHVSQLVAIEEDEYIINVY---NEKNFQQEAFYIMATRNGMIKKSHAGLF-KTTRYTK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +AMK+  +DEI+SV+  T++  I + T  G  + +  + +    G  + GV+ I+L  
Sbjct: 630 PLVAMKVKPQDEIISVQRLTEDQIITVLTHKGMSLTYNTNELS-DTGLRAAGVKSINLKV 688

Query: 732 GDQVISMAIV 741
            D V+   +V
Sbjct: 689 EDFVVMTEVV 698



 Score = 38.5 bits (88), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  I+E +  +  +   E  I++V+ +G+ KRTS+  F  S  S  G++  D     
Sbjct: 481 SAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLKQGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
               L+    VN  D I++ ++KG  + +PV+++
Sbjct: 536 ---RLLKYQEVNTQDTILVFTNKGRYLFIPVHKL 566


>gi|322372519|ref|ZP_08047055.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
 gi|321277561|gb|EFX54630.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
          Length = 818

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 274/743 (36%), Positives = 423/743 (56%), Gaps = 51/743 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + 
Sbjct: 184 AEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 244 IEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K+
Sbjct: 304 KDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARSKF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++            
Sbjct: 364 DKDKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++NE   L  +I     I+    
Sbjct: 411 -------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR   
Sbjct: 458 TMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFSSLGFVYKEKVWRLPIGS 610
             + A      G+     RD+D   DL +V    T   +L F++   V    +  LP   
Sbjct: 518 RSFNASTIDEVGK-----RDDD---DLILVQQAKTTQHLLMFTNQANVIYRPIHELPDIR 569

Query: 611 PQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI- 668
            +  G+ L   I +L++ E +     + E    +     + ATK G ++R +  +F    
Sbjct: 570 WKDLGEHLSQTITNLSKDEEVL----YAEILDDFEAGTYLAATKLGQIKRFERKEFTPWR 625

Query: 669 ---NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              ++S K A   D+ D I++V T  Q +D+++ T+ G  +RF    + V  G  + GV+
Sbjct: 626 TYKSKSVKYAKLKDASDCIVTV-TPIQLDDVMIITQKGYALRFNADEVPV-VGAKATGVK 683

Query: 726 GISLAKGDQVISMAIVLHADADY 748
            I+L K D  +    V +  + Y
Sbjct: 684 AINL-KDDDTVQAVFVANTQSFY 705


>gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 307/906 (33%), Positives = 485/906 (53%), Gaps = 127/906 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+ 
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSP 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R  ++ GL   ++ LDEV+ +IR S N +   +E ++ S++           
Sbjct: 363 FDKEKAEKRLRIVEGLIRVISILDEVIALIRASEN-KADPKENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK    TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI  
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564

Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660
                  L +I   + GE ++ TI  F  +E+         +++    F AT+ G ++R 
Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDATTYFAATRLGQIKRV 617

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + V 
Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L K D V+    + +  + Y         +  QR           SLK
Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GSLK 715

Query: 777 NDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKG 826
              S+E  ++  R +       ELK K   +     V+E+GF                  
Sbjct: 716 R-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF------------------ 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFST 885
                      +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T
Sbjct: 757 -----------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDT 804

Query: 886 AKDERV 891
             DE V
Sbjct: 805 ISDEEV 810


>gi|227893711|ref|ZP_04011516.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864571|gb|EEJ71992.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 818

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 273/719 (37%), Positives = 410/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKDTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I+   G R++IV TEI
Sbjct: 203 SLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQVRAKTSIQDIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNK+ +++KI E+   K I  IA++RDE+DR G  +V+ELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVVELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTKY LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKRTKYDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                             +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK--------------------------YKFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E   L   +++   +LS R  L   I +EL +VK E
Sbjct: 417 KQAEAIVSLQLYRLTNTDVNELIAEQTKLNKLVEKYRKLLSDRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT+I +    +E DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 477 FSNPRRTQISQESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDTDNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F    +  N L    AT  G +++ +L++ +Q  R+ K     A+KL S+D +L
Sbjct: 592 IIRVFAFNNLNADENFL---LATNDGYIKQLELAN-LQPTRTYKSRAMTAIKLKSKDSLL 647

Query: 686 SVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
                 + N   +I L T     +R+ IS I   +G  ++GV+  +L   D ++   +V
Sbjct: 648 VGVDLVKPNAKKEITLFTHRAYAIRYDISEIPA-SGAKAIGVKSANLKDDDYIVGYVLV 705


>gi|306818810|ref|ZP_07452532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|304648496|gb|EFM45799.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
          Length = 847

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 290/757 (38%), Positives = 413/757 (54%), Gaps = 63/757 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M QMG+ 
Sbjct: 30  NSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMGLT 89

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS D D PA
Sbjct: 90  PDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DGPA 148

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  GIAVG+
Sbjct: 149 AARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAVGV 208

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ AY TGRG
Sbjct: 209 ATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREAYETGRG 268

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +D SDR+
Sbjct: 269 VFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLSDRK 328

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+ FV  R
Sbjct: 329 NGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQVFVDHR 388

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR           
Sbjct: 389 IEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARAR--------- 439

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               LI + D             LSE Q   ILEL+L RLT   R ++  E + L   I 
Sbjct: 440 ----LISVFD-------------LSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIA 482

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   IL+S  +L G++++EL      L +PRRT ++E     ED   +   ED +     
Sbjct: 483 ELEAILASTEKLHGVVRRELQDTATALSSPRRTLLLE-----EDGTAVAAAEDDLAPAVG 537

Query: 545 LGYVKRVPLS--------VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FSS 594
           +     VPL         V+ A     +  + V       +       T T  +F   +S
Sbjct: 538 VTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVTS 597

Query: 595 LGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERITTIMPFPEDESSWN 644
            GFV +     LP     A G+ +              +L +GE +  I+   EDE    
Sbjct: 598 SGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDE---- 653

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              V   T+ G ++R +  D+        I + LD  D+++       +   +L +   Q
Sbjct: 654 --IVGIITESGVIKRMR-PDYPSTQNRFPI-INLDDTDQVVFAGAAGDDAQFVLVSTDAQ 709

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R P SA+R   GRN+ GV G+SL    +V++ AI+
Sbjct: 710 LLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAIL 745


>gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 800

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 280/833 (33%), Positives = 454/833 (54%), Gaps = 86/833 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGIIQGVDGIKKAYESGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E + L   IK+  +IL    
Sbjct: 408 ---------AEFDFTEAQAEAIVMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLTVIKDELNEIKKKFKVDRLSAIEAEISEIKIDKEVMVPSEEVILSITRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + V AT++G ++++ +S 
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIDEDEQVINVYNEKDFNHDAFYVMATRNGMIKKSSVSQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  + MK+  +DEI++V     +  I + T  G  + +  + +    G  + 
Sbjct: 622 F-KTTRFNKPLVGMKVKDKDEIINVVRLESDQLITVITNKGMSLTYSTAELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVI-------SMAIVLHADADYDERICYMKHMSAQR------------- 762
           GV+ I+L   D V+       S +I++       +RI Y    +A+R             
Sbjct: 680 GVKSINLKDEDYVVMTEEVNESDSIIMVTQRGAIKRISYKVLQAAKRAQRGITLLKELKK 739

Query: 763 ---RLISG-----DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
              R++       + E  T   N +   G+I++    E      FI+ V E G
Sbjct: 740 NPHRIVDAAVVRENQETYTIFSNSNEESGSITDVHLSEQYTNGSFIIDVDEFG 792



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 121/263 (46%), Gaps = 29/263 (11%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  +    ++ +L+ T  G+ +  P+ 
Sbjct: 508 TRHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVH 564

Query: 712 AIRVF----AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            +        G++   +  + + + +QVI+    ++ + D++    Y+  M+ +  +I  
Sbjct: 565 KLADIRWKELGQHVSQI--VPIDEDEQVIN----VYNEKDFNHDAFYV--MATRNGMIKK 616

Query: 768 DT-EEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNR 822
            +  +  + + +  + G   +++ + + +     +Q I  ++ KG      S  +  +  
Sbjct: 617 SSVSQFKTTRFNKPLVGMKVKDKDEIINVVRLESDQLITVITNKGM-----SLTYSTAEL 671

Query: 823 SGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           S  G+RA  V  IN  +   +V    VN++D II+V+ +G + R+    ++ A RA +G+
Sbjct: 672 SDTGLRAAGVKSINLKDEDYVVMTEEVNESDSIIMVTQRGAIKRISYKVLQAAKRAQRGI 731

Query: 881 VIFSTAKD--ERVVSVERIRESE 901
            +    K    R+V    +RE++
Sbjct: 732 TLLKELKKNPHRIVDAAVVRENQ 754


>gi|320546628|ref|ZP_08040940.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
 gi|320448683|gb|EFW89414.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
          Length = 819

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 277/740 (37%), Positives = 414/740 (55%), Gaps = 58/740 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K 
Sbjct: 3   NVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLHDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  +
Sbjct: 183 LAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 DIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A    ILN L +YT LQ  ++ NMVA++ Y P +  +I +L ++VA R+E++V R+K
Sbjct: 303 KKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYVAHRKEIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 I  D     SE Q  AI+ L+L RL+      + NE   L   I     I+   
Sbjct: 406 -----KISYD----FSEEQAEAIVTLQLYRLSNTDIVALENEEAELRERITMFKAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR T +      ++++    IV ED  V+V+  GY+KR  
Sbjct: 457 RTMYNVMKRELREVKKKFANPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R P+    
Sbjct: 517 PRSFNASTVEEIGK-----RDDDELIFVSQAKTTQHLLIFTNLGNV----IYR-PV---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFATKHGNVR---RN 660
                L +I   + GE ++ TI  F  DES         +       ATK G ++   R 
Sbjct: 563 ---HELTDIRWKDIGEHLSQTITNFATDESVLYAEIVDEFGPQTYFAATKLGQIKRFERK 619

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++S +           KL + D+++   +    +D+++ T  G  + F I  + V  G  
Sbjct: 620 EISPWRTYKSKAVKYAKLKNDDDMIVTISPIALDDVMVVTHNGYALHFNIDEVPV-VGAK 678

Query: 721 SVGVRGISLAKGDQVISMAI 740
           + GV+ I+L   D V+S  I
Sbjct: 679 AAGVKSINLKDDDFVVSTFI 698


>gi|257414210|ref|ZP_04745589.2| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257200859|gb|EEU99143.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
          Length = 749

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 270/742 (36%), Positives = 423/742 (57%), Gaps = 37/742 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++
Sbjct: 4   DMNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYD 63

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  AA 
Sbjct: 64  KPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAM 123

Query: 129 RYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           RYTE RLQK      L DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAVGM 
Sbjct: 124 RYTEARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMT 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG G 
Sbjct: 184 TSIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTGMGK 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESD 304
           I IRG   +EK  G ++++V+TEIPY +   N    L  I  LV  K+  DI D+ ++S 
Sbjct: 244 IKIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITNQSS 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           ++G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  V F
Sbjct: 304 KEGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHHVNF 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L       
Sbjct: 364 QYELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACL------T 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             I D I+   + S    +   +  +E QT AILE+RL +L GL  + +  + +     I
Sbjct: 418 DGITDNINFKSEQSKRDAA--KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNI 475

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVS 543
            +  DIL SR+ +  +I +EL S K E   PR+T +++ L +   E+  + E D+V  + 
Sbjct: 476 SKYEDILGSRAAMAKVIIKELESFKKEYAKPRKT-VIDNLEEAVVEEKKIEEMDVVFLMD 534

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K V ++ Y   +      +  ++  ++  TD         +  F++ G ++  KV
Sbjct: 535 RFGYAKTVDVATYERNKEAANTENRYILTCKN--TD--------KICIFTNKGQMHLLKV 584

Query: 604 WRLPIGSPQARGKALINILSLNQGER----ITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             LP G  + +G  + N+ + N  E     IT +      +       V+F TK   ++ 
Sbjct: 585 LDLPYGKFRDKGTPIDNLSNYNSSEENFVYITNLAAISRSQ-------VLFGTKSAMLKV 637

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              S+F  + +    A KL+  DE++ V+    E  +++ ++    +R  IS+I     +
Sbjct: 638 VDGSEF-DVAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPE-KKK 695

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
            +VGVRG+ L  GD + ++ ++
Sbjct: 696 GAVGVRGMKLGAGDALAAIYLL 717


>gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806]
 gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis]
          Length = 894

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 296/897 (32%), Positives = 487/897 (54%), Gaps = 80/897 (8%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           S+L Y+++VI  RA+PDL+DGLKPVHRRIL+   +  +  + ++ K A + G VMG YHP
Sbjct: 34  SFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSRFKKSATLVGAVMGSYHP 93

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ +IYDAL R++QD+ +R  L+EGQGNFGS+DGD PAA RYTE +L K     L  + 
Sbjct: 94  HGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRYTEIKLSKFGEKFLSGIK 153

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           ++ VDF  NYDGS QEP +L    P++L+NG  GIAVGMAT IP HNL EV D  +A+ID
Sbjct: 154 EECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKIPPHNLREVCDAIIALID 213

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP++  +  +E I+GPDFPTG  I+G   +K  ++ G G I++R    I+    ++ Q++
Sbjct: 214 NPELQDEQFIEYIKGPDFPTGGEIIGIESVKRYHSKGLGKIILRSKVEID---ANKHQLI 270

Query: 268 VTEIPYQVNKAAMLEKIAELVRE------KRIVDI-----ADLRDESD-RQGYRVVIELK 315
           + EIP+ + KA +++KIA+L  E      +R  +I      ++RDES+ ++G R++IE K
Sbjct: 271 IKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQNIRDESNLKEGIRLIIECK 330

Query: 316 RGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +G+       +LN LY+Y  LQ  F+VN+  L   KP+   +  I++ ++  + +++ R+
Sbjct: 331 KGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGKPQLLGIGAIIRNYLQHQLDMLQRK 390

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L + + R H+L G    V NLDEV+RII    NPE     ++Q  ++         
Sbjct: 391 TKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEV----IIQEKYS--------- 437

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+ VQ + I +L L +L  +    + NEL+    +  E   +L 
Sbjct: 438 ----------------LTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLD 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            +++    IK+EL+ +K+E     R  ++  +G+  +   DCI +ED+++ V+   Y+  
Sbjct: 482 DKNKQYENIKKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIPKEDIILKVTQNNYIAA 541

Query: 551 VPLSVYRAQRRGGKGR-SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +PL       R   G  S    +  D   DL + S+H  +  F++   V+K K   + I 
Sbjct: 542 IPLDKIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKIS 601

Query: 610 SPQARGK---ALINILSL-NQGERITTIMPFPEDESS----WNNLYVVFATKHGNVRRNK 661
           + +   K    L N++ L  + E+   I+    +E +    W ++ ++FATK G +R+  
Sbjct: 602 ANKKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKIS 661

Query: 662 LSDFI--QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              F   +  +SGK AM+L   D++  V    ++++ILL +   + +RF  S +     R
Sbjct: 662 FYKFFLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLKN 777
            + GVRGI+L   D  I   ++  A + YD         S + ++ S D+  +EI  +K 
Sbjct: 722 KTFGVRGINLRNDDGKIEGELI-SASSTYDGDQLLSLVESGKGKITSLDSIKQEIVKVK- 779

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR-SGKGIRATDVSKIN 836
                    EE  QE+   E+ I    +   G+    Y+ ++S +  GKG+ A   +K N
Sbjct: 780 ------EYDEETKQEV---EKIIKQDKKDEDGEL--EYEIKLSKKWGGKGVLAYK-NKEN 827

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVV 892
           E   L+A   + D+DQI+L+++K  + R   ++I +  +R T+G  + S   +E++V
Sbjct: 828 E--KLIACVLIKDSDQILLMTNKDHINRFQASQISVRKTRRTEGSQLISLKPNEKLV 882


>gi|307701128|ref|ZP_07638153.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
 gi|307614123|gb|EFN93367.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
          Length = 847

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 289/757 (38%), Positives = 413/757 (54%), Gaps = 63/757 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M QMG+ 
Sbjct: 30  NSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMGLT 89

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS D D PA
Sbjct: 90  PDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DGPA 148

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  GIAVG+
Sbjct: 149 AARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAVGV 208

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ AY TGRG
Sbjct: 209 ATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREAYETGRG 268

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +D SDR+
Sbjct: 269 VFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLSDRK 328

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+ FV  R
Sbjct: 329 NGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQVFVDHR 388

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR           
Sbjct: 389 IEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARAR--------- 439

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               LI + D             LSE Q   ILEL+L RLT   R ++  E + L   I 
Sbjct: 440 ----LISVFD-------------LSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIA 482

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   +L+S  +L G++++EL      L +PRRT ++E     ED   +   ED +     
Sbjct: 483 ELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLE-----EDGTAVAAAEDDLAPAVG 537

Query: 545 LGYVKRVPLS--------VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FSS 594
           +     VPL         V+ A     +  + V       +       T T  +F   +S
Sbjct: 538 VTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVTS 597

Query: 595 LGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERITTIMPFPEDESSWN 644
            GFV +     LP     A G+ +              +L +GE +  I+   EDE    
Sbjct: 598 SGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDE---- 653

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              V   T+ G ++R +  D+        I + LD  D+++       +   +L +   Q
Sbjct: 654 --IVGIITESGVIKRMR-PDYPSTQNRFPI-INLDDTDQVVFAGAAGDDAQFVLVSTDAQ 709

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R P SA+R   GRN+ GV G+SL    +V++ AI+
Sbjct: 710 LLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAIL 745


>gi|227875501|ref|ZP_03993641.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843837|gb|EEJ54006.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 847

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 289/757 (38%), Positives = 413/757 (54%), Gaps = 63/757 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M QMG+ 
Sbjct: 30  NSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMGLT 89

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS D D PA
Sbjct: 90  PDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DGPA 148

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  GIAVG+
Sbjct: 149 AARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAVGV 208

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ AY TGRG
Sbjct: 209 ATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREAYETGRG 268

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +D SDR+
Sbjct: 269 VFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLSDRK 328

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+ FV  R
Sbjct: 329 NGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQVFVDHR 388

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR           
Sbjct: 389 IEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARAR--------- 439

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               LI + D             LSE Q   ILEL+L RLT   R ++  E + L   I 
Sbjct: 440 ----LISVFD-------------LSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIA 482

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   +L+S  +L G++++EL      L +PRRT ++E     ED   +   ED +     
Sbjct: 483 ELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLE-----EDGTAVAAAEDDLAPAVG 537

Query: 545 LGYVKRVPLS--------VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FSS 594
           +     VPL         V+ A     +  + V       +       T T  +F   +S
Sbjct: 538 VTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVTS 597

Query: 595 LGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERITTIMPFPEDESSWN 644
            GFV +     LP     A G+ +              +L +GE +  I+   EDE    
Sbjct: 598 SGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDE---- 653

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              V   T+ G ++R +  D+        I + LD  D+++       +   +L +   Q
Sbjct: 654 --IVGIITESGVIKRMR-PDYPSTQNRFPI-INLDDTDQVVYAGAAGDDAQFVLVSTDAQ 709

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R P SA+R   GRN+ GV G+SL    +V++ AI+
Sbjct: 710 LLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAIL 745


>gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065]
          Length = 956

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 305/898 (33%), Positives = 475/898 (52%), Gaps = 73/898 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ DV+   L  LY+ T LQS  S NMVAL   KP+   L  +LK +V  
Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++    
Sbjct: 369 QKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTV 542
            +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T+
Sbjct: 463 NKLTKILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEEIIVEEDVVLTL 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ K
Sbjct: 523 SNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIK 579

Query: 603 VWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V  +P    + +G  L  I+ +++  E   TIM     E+      ++F T  G +++  
Sbjct: 580 VINIPEFKWKEKGVKLDEIIKTIDLSE---TIMEAFSIEAFTAQKDMLFITDSGYIKKTT 636

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++     
Sbjct: 637 LDKF-NTNYTKIMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEP-VD 694

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSLK 776
           RN +G +   +   D   S+  V   D +Y+ +  Y+         IS   D +   SL 
Sbjct: 695 RNIIGYKLFDILPND---SIEKVDFCD-NYEYKSFYVNISKEGLITISDLKDNKSHISLF 750

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            DSS                 + ++   ++G      ++ F+     G  I A    KI+
Sbjct: 751 TDSS-----------------KILVLFDDEGKAYYIPAFMFQSIKEEGINISAFTGDKIS 793

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + A ++ F   ++  I   S+KG + R  ++E++I   +T+  V     K++++VS+
Sbjct: 794 LLNA-ISTFRFEEDISIYFSSEKGLIKRTLLSELKIEGNSTQ--VYKFKHKEDKLVSI 848



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 20/181 (11%)

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKE---KVWRLPIGSPQARGKALINILSLNQGERIT-- 631
           ++DL    +H S+   SS   V  +   K + +P    Q+  +  INI +   G++I+  
Sbjct: 737 ISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAFMFQSIKEEGINISAFT-GDKISLL 795

Query: 632 ---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG--KIAMKLDSRDEIL 685
              +   F ED S      + F+++ G ++R  LS+  I+ N +   K   K D    IL
Sbjct: 796 NAISTFRFEEDIS------IYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSIL 849

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             E   Q+N IL+ T+    +RF   A+    G+ + GV GISL   D+VI  +I+   D
Sbjct: 850 IKEHGEQKN-ILIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILASIIDEND 907

Query: 746 A 746
            
Sbjct: 908 T 908


>gi|291535204|emb|CBL08316.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis M50/1]
          Length = 745

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/739 (36%), Positives = 425/739 (57%), Gaps = 37/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 3   QEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  AA RYT
Sbjct: 63  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYT 122

Query: 132 ECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RLQK      L DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAVGM T+I
Sbjct: 123 EARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG G I I
Sbjct: 183 PPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTGMGKIKI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +EK  G ++++V+TEIPY +   N    L  I  LV  K+  DI D+ ++S ++G
Sbjct: 243 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  V F+ E
Sbjct: 303 IRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHHVNFQYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L         I
Sbjct: 363 LATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACL------TDGI 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            D I+   + S    +   +  +E QT AILE+RL +L GL  + +  + +     I + 
Sbjct: 417 TDNINFKSEQSKRDAA--KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLG 546
            DIL SR+ +  +I +EL S K E   PR+T +++ L +   E+  + E D+V  +   G
Sbjct: 475 EDILGSRAAMAKVIIKELESFKKEYAKPRKT-VIDNLEEAVVEEKKIEEMDVVFLMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V ++ Y   +      +  ++  ++  TD         +  F++ G ++  KV  L
Sbjct: 534 YAKTVDVATYERNKEAANTENRYILTCKN--TD--------KICIFTNKGQMHLLKVLDL 583

Query: 607 PIGSPQARGKALINILSLNQGER----ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           P G  + +G  + N+ + N  E     IT +       ++ ++  V+F TK   ++    
Sbjct: 584 PYGKFRDKGTPIDNLSNYNSSEENFVYITNL-------AAISHSQVLFGTKSAMLKVVDG 636

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F  + +    A KL+  DE++ V+    E  +++ ++    +R  IS+I     + +V
Sbjct: 637 SEF-DVAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPE-KKKGAV 694

Query: 723 GVRGISLAKGDQVISMAIV 741
           GVRG+ L  GD + ++ ++
Sbjct: 695 GVRGMKLGAGDALAAIYLL 713


>gi|270290231|ref|ZP_06196456.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304384955|ref|ZP_07367301.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
 gi|270281012|gb|EFA26845.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304329149|gb|EFL96369.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
          Length = 817

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 277/751 (36%), Positives = 422/751 (56%), Gaps = 68/751 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G   +K 
Sbjct: 3   DNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+Q+W LR+ LIE  GN GS+D DPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +L D+ K+TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GEV+D  +  I +PD  L+ LME ++GPDFPTG ++ GR G+K AY TGRG +V+
Sbjct: 183 PPHNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGGIVQGRDGLKQAYKTGRGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++QI +TEIPY+VNKA +++KI E+   K+I  IA++RDESDR+G  +
Sbjct: 243 RSRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDESDREGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+   A  +LN L + T LQ  ++ NMVA+N  +PER  L  I++A+V F++EV+ 
Sbjct: 303 AIELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLRPERMGLKPIIQAYVDFQKEVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA  R H++ GL  A++ LD+V++ IR S + + A+  L++R          
Sbjct: 363 KRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  +I+ L+L RLT     +++ E   L   I E   I
Sbjct: 413 ----------------FDFSEKQAESIVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYV 548
           L+  ++L  ++  EL  VK +  TPR + I + + +++ D    V E+ V V VS  GY+
Sbjct: 457 LNDPAKLSRVLSAELRKVKKQYATPRLSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYL 516

Query: 549 KRVPLSVYRAQ--RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           KR  L  Y+A     G K     V + E        +ST   +L F++ G +    V+ +
Sbjct: 517 KRSSLRSYKASADEDGLKDGDQPVFKHE--------LSTLDHLLMFTNKGNLIYRPVYEI 568

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDE---------SSWNNLYVVFATKHGNV 657
                +AR K        + GE ++  +   +DE         +    +  + AT  G +
Sbjct: 569 ----TEARWK--------DTGEHVSQTIGLADDEIILKAYDVKNFKQPINFLIATDDGYI 616

Query: 658 RRNKLSDFIQINRSGKIAM---KLDSRD----EILSVETCTQENDILLTTKLGQCVRFPI 710
           ++  L D        K A+   KL  +      ++ V+  T    ILL ++ G  +R+ +
Sbjct: 617 KQTALQDLKPGRTYRKKAITYAKLKKQGAKVVNVVQVDPKTAPATILLASEHGYGLRYDL 676

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             I     R + GV+ + L + DQV +  +V
Sbjct: 677 VEIPTVGPR-AAGVKSMDL-RDDQVANFVLV 705



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  SE G+G R    +         G+++ D+ + +++   V V   ND DQI L++++
Sbjct: 662 ILLASEHGYGLRYDLVEIPTVGPRAAGVKSMDL-RDDQVANFVLV---NDEDQIGLITNR 717

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
           G+  R+ V+EI + SRA +GV I    K E  RVV +  + E +
Sbjct: 718 GSFKRMKVSEISVTSRARRGVQILRELKKEPHRVVDIAVVNEHQ 761


>gi|87123344|ref|ZP_01079195.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
 gi|86169064|gb|EAQ70320.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
          Length = 831

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 288/761 (37%), Positives = 430/761 (56%), Gaps = 63/761 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHQGLLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  VA++  P++  D L+ +I GPDFPTG  +L  +G++  Y +GRGSI +R
Sbjct: 183 PHNLGEVVDALVALVRQPELSDDKLLTLIPGPDFPTGGEVLLGSGVRETYLSGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE     K    R  +V+TE+P+Q++KA  +EK+AE V E RI  IAD+RDESDR 
Sbjct: 243 GVAHIEEVQPGKGRHKRNAVVITELPFQLSKAGWIEKLAEQVNEGRIGGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R +    +L  L R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDSDPGKVLADLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + ++RRT + L K  DR  V+ GL  A+  L +V+ +I+ + +  +AR  LM        
Sbjct: 363 QTLIRRTSHALRKTEDRLEVVEGLNRALEALQQVISMIQEARDAASARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R E   L  E   
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRKEAEELRQERSR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LL-----------DMEDEDC 532
              +L  R  LL  +  EL  ++    TPRRTR++EG   LL           +++ +  
Sbjct: 457 LQRLLEQRDVLLAALVDELKQLRKRFATPRRTRLIEGGDHLLAERAASQRPNAELQRKQA 516

Query: 533 I--VREDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI-VSTHTS 588
           +  +  D  + +   G VK + P  + R        +    + DE     L + ++    
Sbjct: 517 LGALPGDARLLIQADGQVKVISPQVLGRMHL-----QDAAALGDEPSPARLILPIAPPPR 571

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNL 646
           +L  ++ G V   + W      P A  + L   +   +GE +  ++  P  +D+ +   L
Sbjct: 572 LLALTAQGRVALVR-WEFAGQQPGALERFLPTAM---EGETVINLLQLPDTDDDHASRTL 627

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   +  G  +R  L D  +++      +KL     + +   C++   I L T +G+ +
Sbjct: 628 SLGLLSSDGRFKRLPLQDLQELSGRAASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVL 687

Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           R P+    +   G+ + G   + L  G+Q++  A+ L ADA
Sbjct: 688 RLPVDDTALPLMGKLAQGPVALRLLPGEQLVG-AVSLAADA 727


>gi|225374475|ref|ZP_03751696.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
 gi|225213713|gb|EEG96067.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
          Length = 746

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/746 (36%), Positives = 415/746 (55%), Gaps = 49/746 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 3   QQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IYDAL  MAQ++   L L++G GNFGS++GD  AA RY
Sbjct: 63  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRY 122

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQK      L DL KD VDF PN+D + +EP VL  + PN+LVNG  GIAVGM T+
Sbjct: 123 TEARLQKITQEAFLSDLDKDVVDFVPNFDETEKEPEVLPVKIPNLLVNGSDGIAVGMVTS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            P HNLGEV+DG +A I NPDI+ + +ME I GPDFPTG +I  +  +   Y+TG G I 
Sbjct: 183 TPPHNLGEVIDGVIAYIKNPDINTEQMMEYIPGPDFPTGGIIANKDDLIQIYSTGMGKIK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           IRG   +E+  G +E+IV+TEIPY +   N    L  +  LV  K+  DI D+ ++S ++
Sbjct: 243 IRGKVEVEQVKGGKERIVITEIPYTMIGANIGKFLNDVYSLVETKKTNDIVDITNQSSKE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++GA    ++N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ 
Sbjct: 303 GIRIVLELRKGADTQNLINLLYKKTKLEDTFGVNMLAVAEGRPETLGLVPIIRHHVKFQY 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+ + LL K  D+  +  GL  A   +D ++ I+R S N + AR  L         
Sbjct: 363 ELATRKYQTLLKKELDKKEIQEGLIKACDVIDLIIEILRGSKNVKDARACL------TDG 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           + D I      S  + S+  +  +E QT AILE+RL +L GL  + +  +       I E
Sbjct: 417 VTDNITFKSAQSEKMASE--LRFTERQTTAILEMRLQKLIGLEIEALMKDHEDTLKHIAE 474

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL +R+ +  ++ +EL S K +   PR+T I      + +E  I   D+V  +   G
Sbjct: 475 YEDILENRATMAKVLIKELQSYKKQYAVPRKTLIDNLEEAVVEEKKIEEMDVVFLMDRFG 534

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V +SVY   +      +  ++  ++  TD         +  F++ G ++  KV  L
Sbjct: 535 YAKTVDVSVYERNKEAADTENRYILTCKN--TD--------KICIFTNKGQMHLLKVLDL 584

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV-----------FATKHG 655
           P G  + +G  + N+ +               D S  N +Y++           F TK  
Sbjct: 585 PYGKFRDKGIPIDNLSNY--------------DSSEENFIYIINLGAIIHSRLLFGTKTA 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++    S+F  + +    + KL+  DE+L V   T E  +++ ++    +R   S I  
Sbjct: 631 MLKMVDGSEF-DVAKRTTASTKLNEDDELLIVHAMTGEETVVMQSEKEMFLRIEASTIPE 689

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIV 741
              + +VGVRG+ L  GD + ++ ++
Sbjct: 690 -KKKGAVGVRGMKLNAGDALSNIYVL 714


>gi|313890155|ref|ZP_07823790.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121516|gb|EFR44620.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 819

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/739 (36%), Positives = 423/739 (57%), Gaps = 47/739 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + + +LL+D+ K+TV F  N+D + +EP VL A YPN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEISGYLLEDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   LD LME + GPDFPTG++I G+  I+ AY TG+G +V+R  + 
Sbjct: 184 AEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSIIQGQDEIRKAYETGKGRVVVRSKTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++QI+VTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IELK
Sbjct: 244 IEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A    +LN L +YT LQ  ++ NMVA++ Y P +  +  IL +++A R+ +++ R+K+
Sbjct: 304 KDADTQTVLNYLLKYTDLQVNYNFNMVAIDNYTPHQVGIQKILSSYIAHRKSIIIERSKF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            + KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                  
Sbjct: 364 DMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL------------------ 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             SY          +E Q  AI+ L+L RLT      ++NE   LG  I     I++  +
Sbjct: 406 KISYA--------FTEEQAEAIVTLQLYRLTNTDIVTLQNEEEELGNLITTLRAIIADEA 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PRR+++ +    ++++    IV E+  V+++  GY+KR   
Sbjct: 458 TMYNVMKRELREVKKKFGNPRRSQLQKEAETIEIDTASLIVEEETFVSLTQGGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSP 611
             + A      G+     RD+D +  +F+ S  T+  +L F+ LG V    V  L     
Sbjct: 518 RSFNASTLEEIGK-----RDDDSL--IFVASAKTTQHLLIFTDLGNVIYRPVHELQDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI--- 668
           +  G+ L   ++ N G     +     D+      Y V  T+ G ++R + ++       
Sbjct: 571 KEIGEHLSQTIT-NYGNDEKVLYAELVDDFKSGTYYSV--TQLGQIKRFERAELAPWRTY 627

Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++S K A   + +D I++V+    E DI+L +  G  +RF    + V  G  + GV+ +
Sbjct: 628 RSKSLKYAKLKNEQDRIIAVQPILFE-DIMLISHQGYALRFSNEEVPV-QGLKTAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADA 746
           +L K D + S A + + D+
Sbjct: 686 NLKKDDYIAS-AFLAYTDS 703


>gi|269977252|ref|ZP_06184225.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
 gi|269934555|gb|EEZ91116.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
          Length = 847

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 289/757 (38%), Positives = 413/757 (54%), Gaps = 63/757 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M QMG+ 
Sbjct: 30  NSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQMKQMGLT 89

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS D D PA
Sbjct: 90  PDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSPD-DGPA 148

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  GIAVG+
Sbjct: 149 AARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVNGIAVGV 208

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ AY TGRG
Sbjct: 209 ATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREAYETGRG 268

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +D SDR+
Sbjct: 269 VFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQDLSDRK 328

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+ FV  R
Sbjct: 329 NGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQVFVDHR 388

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR           
Sbjct: 389 IEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARAR--------- 439

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               LI + D             LSE Q   ILEL+L RLT   R ++  E + L   I 
Sbjct: 440 ----LISVFD-------------LSEPQAEYILELKLRRLTKFSRLELEAEADELRAAIA 482

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   +L+S  +L G++++EL      L +PRRT ++E     ED   +   ED +     
Sbjct: 483 ELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLE-----EDGTAVAAAEDDLAPAVG 537

Query: 545 LGYVKRVPLS--------VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FSS 594
           +     VPL         V+ A     +  + V       +       T T  +F   +S
Sbjct: 538 VTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVTS 597

Query: 595 LGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERITTIMPFPEDESSWN 644
            GFV +     LP     A G+ +              +L +GE +  I+   EDE    
Sbjct: 598 SGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDE---- 653

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              V   T+ G ++R +  D+        I + LD  D+++       +   +L +   Q
Sbjct: 654 --IVGIITESGVIKRMR-PDYPSTQNRFPI-INLDDTDQVVFAGAAGDDAQFVLVSTDAQ 709

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R P SA+R   GRN+ GV G+SL    +V++ AI+
Sbjct: 710 LLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAIL 745


>gi|24379629|ref|NP_721584.1| DNA topoisomerase IV subunit A [Streptococcus mutans UA159]
 gi|24377581|gb|AAN58890.1|AE014957_3 topoisomerase IV, subunit A [Streptococcus mutans UA159]
          Length = 818

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 277/750 (36%), Positives = 416/750 (55%), Gaps = 65/750 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 4   IQIMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEIADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + 
Sbjct: 184 AEVIDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G ++QIV TEIPY+VNKAA+++KI ++    ++  IA++RDESDR+G R+ IELK
Sbjct: 244 IENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A    ILN L++YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+K+
Sbjct: 304 KDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARSKF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                  
Sbjct: 364 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL------------------ 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                I  D     SE Q  AI+ L+L RLT      + NE   L   I     I+    
Sbjct: 406 ----KISYD----FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDER 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +      ++++    IV E+  V+V+  GY+KR   
Sbjct: 458 TMYNVMKRELREVKKKFGNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D V  +    T   +L F++LG V    +  L       
Sbjct: 518 RSFNASTVEELGK-----RDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHEL----ADI 568

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF-----------ATKHGNVRRNKL 662
           R K +   LS N       I  F  DE     LYV             AT+ G ++R + 
Sbjct: 569 RWKEIGEHLSQN-------ITNFATDEEI---LYVDLVDHFEEGTYYAATRLGQIKRFER 618

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            D        +++ K A      D+++ + +  + +D++L T  G  +RF I  + +  G
Sbjct: 619 RDLTPWRSYKSKAAKYAKLKGDDDQVIRI-SPIKLDDVMLITARGYALRFNIEEVPI-VG 676

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADY 748
             + G++ I+L +GD  ++ A + + D+ Y
Sbjct: 677 PKAAGIKAINLKEGDS-LATAFIANTDSIY 705



 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 18/246 (7%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T+ G ++R     F   N S    +     D+++ ++      ++L+ T LG  +  
Sbjct: 504 VSVTRGGYIKRTSPRSF---NASTVEELGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYR 560

Query: 709 PI---SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ-RRL 764
           PI   + IR       +     + A  ++++ + +V H    ++E   Y      Q +R 
Sbjct: 561 PIHELADIRWKEIGEHLSQNITNFATDEEILYVDLVDH----FEEGTYYAATRLGQIKRF 616

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKL---KEQFILTVSEKGFGKRTSSYDFRISN 821
              D     S K+ ++    +  +  Q +++   K   ++ ++ +G+  R +  +  I  
Sbjct: 617 ERRDLTPWRSYKSKAAKYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEVPIVG 676

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
               GI+A +   + E  +L   F  N  D I +++ +G+L R+  N I + SRA +G+ 
Sbjct: 677 PKAAGIKAIN---LKEGDSLATAFIAN-TDSIYILTQRGSLKRMTTNLIPVTSRAKRGLQ 732

Query: 882 IFSTAK 887
           +    K
Sbjct: 733 VLRELK 738


>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
          Length = 824

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/724 (37%), Positives = 414/724 (57%), Gaps = 44/724 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTFDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K+TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNLLLQDIDKNTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D +  EP VL A++PN+LVNG  GI+ G AT IP HNL EV+D  + ++ +P+ 
Sbjct: 143 KMVLNFDDTEYEPTVLPAQFPNLLVNGSTGISAGYATEIPPHNLAEVIDATIYLLKHPEA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGAVI+G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLEDLMQFVKGPDFPTGAVIMGTKGIKEAYQTGRGRIQVRAKTSIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A+ ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKNADAENILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+V+ +RTKY L+KA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHDEDVITKRTKYDLDKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L++                              +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIKE--------------------------FKFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    D +  E N L  ++     +LS R+ L   I +EL +VK  
Sbjct: 417 RQAEAIVSLQLYRLTNTDVDALIAEQNDLNKKVAVYQKLLSDRATLEKEIIKELTAVKKN 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT+I      +E DE  +V ++ V V VS  GY+KR  L  Y++      G    
Sbjct: 477 FASPRRTQISHESAKVEIDEKALVADEQVRVLVSRDGYLKRSSLRSYQSSDEADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + + D V     +ST  ++  F++ G +    V  L     +  G+ L   + L   E+
Sbjct: 533 -LPENDKVVYEKTLSTLDNLYLFTNRGNLIYRPVHELTETKWKETGQHLSQEVGLATDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRD-EI 684
           I  +  F + +    N+  + AT  G +++ KLSD +Q  R+ +     AMK+ S D ++
Sbjct: 592 IIRVFDFDKLDK---NVDFLMATNDGYIKQVKLSD-LQPTRTYRSRAITAMKMKSEDSKM 647

Query: 685 LSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           + ++   T   +I L T     V++ +S I  F G+ ++GV+ ++L   D V+   +V  
Sbjct: 648 IRIDLIKTNSGEITLFTHRAYAVKYDVSEISEFGGK-ALGVKSVNLKDDDYVVGYVLVQP 706

Query: 744 ADAD 747
             AD
Sbjct: 707 EFAD 710


>gi|146318418|ref|YP_001198130.1| DNA topoisomerase IV subunit A [Streptococcus suis 05ZYH33]
 gi|145689224|gb|ABP89730.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 05ZYH33]
          Length = 817

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/720 (37%), Positives = 406/720 (56%), Gaps = 71/720 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R   
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRC 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K
Sbjct: 303 KKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE  +L  +I+    I+   
Sbjct: 406 -KISYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  L    T   +L F++LG V    ++R P+    
Sbjct: 517 PRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNV----IYR-PVHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFA--------------TKHGNV 657
                L +I   + GE ++ T+M F  +E       ++FA              TK+G +
Sbjct: 565 -----LTDIRWKDIGEHLSQTLMNFDTNEE------IIFAELVENFEEGTYFAVTKYGQI 613

Query: 658 RRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +R +  +F       ++S K A   D+ D +++V      +DI+L T+ G  +RF I  +
Sbjct: 614 KRVERKEFTPWRTYKSKSTKYAKLTDAEDVVITVSPVVL-DDIMLMTEKGYALRFNIEEV 672


>gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
 gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 956

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 274/698 (39%), Positives = 400/698 (57%), Gaps = 54/698 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 10  DSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGAHLLKAYPDRPYY 69

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQD++ R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 70  KSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSIDGDSAAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  +L D+ KD V+   NY  S  EP VL A+YPN+LVNG  GIAVG+ATNIP 
Sbjct: 130 ARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVFGIAVGLATNIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A IDN DI    LM  I+GPD PTG +++G+  I +AY +G G + +R 
Sbjct: 190 HNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILIGKDSILSAYESGNGRVTLRA 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            + IEK    R  +V+TE P++ NKA +L+ I+E+  +K+    +  IAD+RDESDR G 
Sbjct: 250 KTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGIADIRDESDRTGI 309

Query: 309 RVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIE K+       D IL  L + T LQ     NMVA+   KPE   L  +L  ++  +
Sbjct: 310 RAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGKPETMGLRTMLWHYIEHQ 369

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EVV RRT+  L  A  R H++ G   A+  +D+++  IR S +   A + L+ +     
Sbjct: 370 KEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDASQNLIAK----- 424

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +E+Q  AILEL L RLTGL       E   L   I+
Sbjct: 425 ---------------------FDFTELQATAILELMLYRLTGLEITAFEKEYKELSKLIR 463

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVT 541
           +  +IL S   LL +IKQELL +KD+    RRT+I+    E  +DM  ++ IV ED+V+T
Sbjct: 464 KLKNILDSERELLNVIKQELLEIKDKYADARRTQIIDDENEAKIDM--DELIVVEDIVIT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT--SVLFFSSLGFVY 599
           +S+ GY+KRVP   Y    R       +  R+ D+  + FI+S++T  ++L F+  G +Y
Sbjct: 522 LSNEGYIKRVPQKTY---VRSNSNPQDIEYREGDY--NRFIISSNTLETILVFTDNGNMY 576

Query: 600 KEKVWRLPIGSPQARGKALINILS-LN-QGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           + K   +P    + +G+ L  I+  +N   ERI T +   +    +N   V F T  G +
Sbjct: 577 QFKGNAIPELRWKEKGERLDTIIKGMNLDSERIVTALSIKDFSGPFN---VQFITNKGII 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQE 693
           ++  LS F   + +  +A+KL    +++SVE   C +E
Sbjct: 634 KKTSLSKFAS-SYTKLMAIKLKEDQKLVSVEIFDCERE 670


>gi|239917820|ref|YP_002957378.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|281413687|ref|ZP_06245429.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|239839027|gb|ACS30824.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
          Length = 868

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 283/764 (37%), Positives = 413/764 (54%), Gaps = 81/764 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +
Sbjct: 22  EQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGH 81

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK AR+ GEVMGK HPHG+AAIYDA+ R+AQ +SLRL +++G GNFGS+D D PAA RYT
Sbjct: 82  VKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+  AA  L  DL + TVDF PNYD  FQ+P VL A YPN+LVNG  GIAVGMATN+ 
Sbjct: 141 EARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMA 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV G   ++ +P+  L+A+M  I GPD P+G  I+G  G+++AYATGRG+  +R
Sbjct: 201 PHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGTFRMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRV 310
               +E+ S  R  +VVTE+PY V    ++E+I   V  K++  IAD+ D +DR+ G R+
Sbjct: 261 AAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRL 320

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK G +   +L  LYR+T L+  F +N VAL   +P+   L+ +L+ +V  R +VV 
Sbjct: 321 QIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVR 380

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K RDR H++ GL +A+ ++DEV+ IIR S +   AR  LM            
Sbjct: 381 RRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM------------ 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   L++VQ   ILELRL +LT   R +++ E + L   I E   I
Sbjct: 429 --------------GVFDLTQVQADHILELRLRQLTKFSRIELQAERDELQAAIAELEAI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-----------------------LDM 527
           L+S +RL  ++  EL +V DE    RRT ++E                         +D+
Sbjct: 475 LASDARLREVVSAELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGAAEAGVDL 534

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              D      +  +   L    R P++         +GR     R  D    +   +   
Sbjct: 535 MVPDTACWALLSTSGRLLRTADRTPIAP--------QGRR----RKHDAFASVVPTTARG 582

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALI------NILSLNQGERITTIMPFPEDES 641
            +   +S G +++ +   LP+    +   A+        ++ L +GE +  ++P      
Sbjct: 583 EIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL----- 637

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTT 700
              +  +   T HG V+R +      +NR    A+ L   D ++       E D ++  T
Sbjct: 638 ---DTVMALGTAHGVVKRVRPE--WPLNRQVVDAVALKDGDAVVGAAPAPDEADQLVFLT 692

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + GQ +R+  SA+R   G    GV GI LA GD V++  +   A
Sbjct: 693 RTGQLLRYAASAVRP-QGPAGGGVAGIRLAAGDTVLAFGVAPAA 735


>gi|146320614|ref|YP_001200325.1| DNA topoisomerase IV subunit A [Streptococcus suis 98HAH33]
 gi|253751560|ref|YP_003024701.1| topoisomerase IV subunit A [Streptococcus suis SC84]
 gi|145691420|gb|ABP91925.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 98HAH33]
 gi|251815849|emb|CAZ51459.1| topoisomerase IV subunit A [Streptococcus suis SC84]
          Length = 817

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/720 (37%), Positives = 406/720 (56%), Gaps = 71/720 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R   
Sbjct: 183 LAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRC 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K
Sbjct: 303 KKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      + NE  +L  +I+    I+   
Sbjct: 406 -KISYE--------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 RTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  L    T   +L F++LG V    ++R P+    
Sbjct: 517 PRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNV----IYR-PVHE-- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFA--------------TKHGNV 657
                L +I   + GE ++ T+M F  +E       ++FA              TK+G +
Sbjct: 565 -----LTDIRWKDIGEHLSQTLMNFDTNEE------IIFAELVENFEEGTYFAVTKYGQI 613

Query: 658 RRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +R +  +F       ++S K A   D+ D +++V      +DI+L T+ G  +RF I  +
Sbjct: 614 KRVERKEFTPWRTYKSKSTKYAKLKDAEDVVITVSPVVL-DDIMLMTEKGYALRFNIEEV 672


>gi|309812888|ref|ZP_07706620.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
 gi|308433166|gb|EFP57066.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
          Length = 866

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 289/754 (38%), Positives = 407/754 (53%), Gaps = 79/754 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+  + I  + + DEM+ ++L Y+ +VI  RA+PD RDGLKPV RRILF M ++G+  N
Sbjct: 11  DEDIVENIIDIDVEDEMRAAFLEYSYSVIYSRALPDARDGLKPVQRRILFSMDELGLTPN 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K +VK +R+ GEVMGKYHPHG++AIYD L RMAQD+++RL LI+G GNFGS+D   PAA 
Sbjct: 71  KNHVKSSRVVGEVMGKYHPHGDSAIYDTLVRMAQDFTMRLPLIDGHGNFGSLD-QGPAAS 129

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  A+  L+  L ++TVDF PNYD S Q+P VL A +PN+LVNG  GIAVGMAT
Sbjct: 130 RYTEARLAPASLTLVAGLDENTVDFVPNYDDSLQQPSVLPAAFPNLLVNGASGIAVGMAT 189

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNLGEVV   V +I NPD  LD LM  + GPD P G  I+G  GI++AY TGRG+ 
Sbjct: 190 NMAPHNLGEVVQAAVHLIKNPDCSLDDLMRFVPGPDLPMGGRIIGLDGIRDAYLTGRGTF 249

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             R  + IE  +  R+ IVVTE+PY V    +++K+ +LV +K++  ++D++D SDR  G
Sbjct: 250 RTRATATIENVTPRRKGIVVTELPYLVGPEKVIDKMKDLVGQKKLHGVSDVKDLSDRHHG 309

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELK G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ +  FR +
Sbjct: 310 LRLVIELKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPRTLGLKELLRVYTDFRID 369

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L K  DR H++ GL IA+ ++DEV++IIR S +  TAR  LMQ        
Sbjct: 370 VVRRRTTHRLGKKEDRLHLVDGLLIAILDIDEVIQIIRSSDDSATARARLMQ-------- 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   IL+L+L RLT   R ++  E + L  EI++ 
Sbjct: 422 ------------------VFDLSEAQATYILDLQLRRLTKFSRLELEKEADELRAEIEKL 463

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------------LLDMEDEDC 532
             IL+    L  ++  ELL+V  E  TPRRT ++EG                L++ D+ C
Sbjct: 464 RAILADVKLLHKVVCDELLAVAKEFGTPRRTVLLEGNGTQAVAKTASKSSMPLEIPDDPC 523

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                  V +S  G + R   S       GG+       R  D V      S        
Sbjct: 524 W------VLLSSTGLIART-TSADLLSTDGGR-------RKHDVVLAAARTSARGEFGVV 569

Query: 593 SSLGFVYKEKVWRLP-----IGSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNL 646
           +S G +++     LP       +P   G A +   + L  GE++ T+     D       
Sbjct: 570 TSAGRLFRVSALELPHLVDTHAAPVLDGGAPVAAFVDLAPGEKVLTVTSLRADSPG---- 625

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMK---LDSRDEIL-SVETCTQENDILLTTKL 702
            +   T  G V+R      +    + K  M+   L   D ++ +VE  T   ++   T  
Sbjct: 626 -LALGTAAGVVKR------VTTEYANKPIMEVITLKGDDVVVGAVELQTGTEELTFVTNE 678

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            Q + F  + +R   GR   GV GI L  G + I
Sbjct: 679 AQLLHFNAANVRP-QGRTGGGVAGIKLGAGARAI 711


>gi|225388932|ref|ZP_03758656.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
 gi|225045014|gb|EEG55260.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
          Length = 741

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 278/766 (36%), Positives = 433/766 (56%), Gaps = 53/766 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 2   ILKTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  ++Q++   + L++G GNFGS++GD  AA RYTE RL
Sbjct: 62  RIVGDTMGKYHPHGDSSIYETLVVLSQEFKKGMTLVDGHGNFGSIEGDGAAAMRYTEARL 121

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TVDF PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 122 EKFAEEVYLKDLDK-TVDFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD   A ID+PDI  + LME++ GPDFPTG +I  ++ +   Y TG G I +RG  
Sbjct: 181 LGEVVDAVDAYIDDPDISTEKLMELMPGPDFPTGGIIANKSDLPAIYETGSGKIKLRGKM 240

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  K   D++++V+TEIPY +  A +   L  +A+LV  K++ D+ D+ ++S+++G R
Sbjct: 241 EVELGKRKADKDKLVITEIPYTMIGAGINKFLMDVADLVESKKLTDVVDISNQSNKEGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL++ A  + I N LY+ T L+  F VNM+A+ G +PE  +L GILK F+ F+ +  
Sbjct: 301 IVLELRKDADIEKIRNILYKKTKLEDTFGVNMLAIAGGRPETLSLRGILKNFLDFQYQNT 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            ++ + LL K R+R  V  GL  A   +D ++ ++R S N + AR  L   + + S+IK 
Sbjct: 361 EKKYRVLLQKERERQEVQEGLIAACDCIDLIIAVLRGSKNLKDARACLT--TGDVSNIK- 417

Query: 430 LIDLIDDSSYTIGSDG---TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                     T G +     ++ +E Q  AILE+RL +L GL       E+ +L  E KE
Sbjct: 418 --------FKTPGFEADAKKLHFTERQASAILEMRLYKLIGL-------EILALEKEHKE 462

Query: 487 CL-------DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
            L        IL SR+ +  +IK +L ++K E   PR+T+I +G   + DE  +  +++V
Sbjct: 463 TLRKIARYEKILGSRATMNQVIKDDLEAIKKEFALPRKTQIEDGPEAVYDETAVQVQEVV 522

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             +   GY K +  + Y   R         V+R                +L F+  G ++
Sbjct: 523 FVMDRFGYCKLLDKATYERNRETVDTEQVHVVR----------CLNTDKILLFTDTGNLH 572

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K   +P G  + +G  + N+   + G+     +    D        +VFAT+   V++
Sbjct: 573 QLKAMDVPAGKLRDKGTPIDNLSKFDGGKETIVYLA---DSRELKGKVLVFATRTAMVKQ 629

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
               +F   NR+   A KL   D ++SV     + +++L T  G  +RF +  I V   +
Sbjct: 630 VPAEEFETNNRT-VAATKLQDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVMK-K 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA--DYDERICYMKHMSAQRR 763
           N+ GVRGI LA+G+++ ++ + L  D   DY  +  +M  +   +R
Sbjct: 688 NARGVRGIKLARGEELEALYL-LGEDPVVDYKGKEVHMNRLKLAKR 732



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +LK + ++  +     K+  + +F  +NR+   + AT   K+ +  ALV+V PV    ++
Sbjct: 612 ELKGKVLVFATRTAMVKQVPAEEFETNNRT---VAAT---KLQDGDALVSVTPVEGQTEV 665

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +L +  G  +R  + EI +  +  +GV     A+ E + ++  + E  +VD
Sbjct: 666 VLRTSNGVFLRFMLEEISVMKKNARGVRGIKLARGEELEALYLLGEDPVVD 716


>gi|78183589|ref|YP_376023.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9902]
 gi|78167883|gb|ABB24980.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9902]
          Length = 806

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 300/804 (37%), Positives = 450/804 (55%), Gaps = 77/804 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y KCAR+ G+V+GK
Sbjct: 1   MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYRKCARVVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLL 143
           YHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE RL   AH  LL
Sbjct: 61  YHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP HNLGEVVDG +
Sbjct: 121 EEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-----K 258
           A+I  P +  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +RGV+H E     K
Sbjct: 181 ALIRQPGLSDERLLELIPGPDFPTGGEVLLSSGLQDTYLQGRGSIPMRGVAHTEEVQLGK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR G RVV+EL+R A
Sbjct: 241 GRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRDGMRVVVELRRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             + +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ +RE  ++RRT + L 
Sbjct: 301 EPEKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYRELTLIRRTSHALR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R                  
Sbjct: 361 KTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVR------------------ 402

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                   + L+E Q  A+L + L RLTGL ++ +R E+++L  E +    +L +R +LL
Sbjct: 403 --------LDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQLL 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
             +  EL ++K    TPRRTR+VEG       D ++ E       +   +++  L+    
Sbjct: 455 DAMVAELKTLKKRFSTPRRTRLVEG------GDALIAERAASQRPNTELLRQQALAALPG 508

Query: 559 QRR---GGKGRSGVVMR---------DEDFVTD-------LFIVSTHTSVLFFSSLGFVY 599
             R      G+  +V           D   V+D       +  +     +L  S+ G V 
Sbjct: 509 DGRLLIQADGQVKIVTPQVLGRLHFGDPCPVSDAPSPARVILPIEPPPRLLAISANGRVA 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             + W      P A  + L + L   +GE I  I P P  ESS  +L ++ +      +R
Sbjct: 569 LVR-WEFAGQQPGALERFLPSGL---EGEPIVAIAPLPMQESSDLSLGLLSSDG--RFKR 622

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-IRVFAG 718
             L++ ++++      +KL    ++ +   C + +D++L + +G+ +R PI+  +    G
Sbjct: 623 LPLAEVLELSGRATSVVKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPINEDVLPRMG 682

Query: 719 RNSVGVRGISLAKGDQVISM------AIVLHADADYDERICYMKHMSAQRR-------LI 765
           R + G   + L  G+ +I          +L ++     RI      S+QR         +
Sbjct: 683 RLAQGPMTMRLLPGEHLIGALCPTKPTALLVSEQGRLARIDLTSIRSSQRGDLGSMAIQL 742

Query: 766 SGDTEEITSLKNDSSVEGNISEER 789
            GDT+ IT L   S + G +S E+
Sbjct: 743 VGDTDRITGLTEASGLIGMVSTEQ 766


>gi|312863329|ref|ZP_07723567.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
 gi|311100865|gb|EFQ59070.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
          Length = 818

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 275/744 (36%), Positives = 421/744 (56%), Gaps = 51/744 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE   L  +I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR  
Sbjct: 457 RTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFSSLGFVYKEKVWRLPIG 609
              + A      G+     RD+D   DL +V    T   +L F++   V    +  LP  
Sbjct: 517 PRSFNASTIDEVGK-----RDDD---DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDI 568

Query: 610 SPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   I +L++ E +     + E    +     + ATK G ++R +  +F   
Sbjct: 569 RWKDLGEHLSQTITNLSKDEEVL----YAEILDDFETGTYLAATKLGQIKRFERKEFTPW 624

Query: 669 ----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               ++S K A   D+ D I++V T  Q +DI++ T+ G  +RF    + V  G  + GV
Sbjct: 625 RTYKSKSVKYAKLKDNSDFIVTV-TPIQLDDIMIITQKGYALRFNADEVPV-VGAKAAGV 682

Query: 725 RGISLAKGDQVISMAIVLHADADY 748
           + I+L K D  +    V +  + Y
Sbjct: 683 KAINL-KDDDTVQAVFVANTQSFY 705


>gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 841

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 287/758 (37%), Positives = 414/758 (54%), Gaps = 66/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     + D++ ++ I  + +  EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 4   MPRRTTAPDQDFQERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VK +R+ GEVMGK HPHG+AAIYDAL RMAQ +S+RL L++G GNFGS 
Sbjct: 64  SEMGLRPDRGHVKSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSP 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  ++  + ++TVDFRPNYDG   EP VL A +PN+LVNG  
Sbjct: 124 D-DAPAAMRYTEARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGAS 182

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+     ++  PD  LD LM+ + GPD PTG +I+G   I+ A
Sbjct: 183 GIAVGMATNIPPHNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGGLIIGLDAIREA 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R  + IE  +  R+ IVVTE+P+ V    ++ KI ELV+ K++V IADL+
Sbjct: 243 YETGRGTFRMRARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLK 302

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR +G R+VIE+K G + + +L +LYR T ++  F +N VAL   +P    L  +L 
Sbjct: 303 DLTDRHKGLRLVIEVKTGFNPEAVLEELYRLTPMEETFGINSVALVDGQPRTLGLRDLLA 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  R EVV RR+ Y   K  +R H++ GL  A+ N+DEV+++IR S +P  AR  LM+
Sbjct: 363 VYVNHRLEVVRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLME 422

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                     T  LSE Q   IL+  L RLT   + ++  E   
Sbjct: 423 --------------------------TFGLSEAQAGYILDTPLRRLTRYDKLELEREKEG 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------LDMEDE 530
           L  EI E   IL S  RL  ++ +EL  V  +  TPRRT++++           L++ D+
Sbjct: 457 LQAEIAELNAILGSEDRLRRVVSKELAEVAKKYGTPRRTQLLDSAEAALKTAIPLEVADD 516

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C+      V +S  G + R       A    G G         D +      +    V 
Sbjct: 517 PCL------VLLSSTGLIAR----TADASPLPGDGPRA----PHDVLVSAVRTTVRGEVG 562

Query: 591 FFSSLGFVYKEKVWRLPI----GSPQ--ARGKALINILSLNQGERITTIMPFPEDESSWN 644
             +S G + +  V  LP     G P   A  + +   ++L   E +  +     DE+   
Sbjct: 563 VITSKGRMIRVSVVELPTLPASGDPPSLAGAQPVTEYVTLEPDEHVVGLGSL--DEAGHG 620

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLG 703
              +   T  G V+R  ++    +NR     + L   D ++ +VE  + ++D++  T   
Sbjct: 621 ---IALGTAQGVVKR--VAPDYPVNRDDFEIISLREGDRVVGAVELESPDHDLVFITSDA 675

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           Q +RFP + +R   GR + GV GI LA+G +VI    V
Sbjct: 676 QLLRFPAATVRP-QGRPAGGVAGIRLAEGARVIWFGAV 712


>gi|125624338|ref|YP_001032821.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493146|emb|CAL98110.1| topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071122|gb|ADJ60522.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 824

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 269/740 (36%), Positives = 427/740 (57%), Gaps = 43/740 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  + +ID+P +D+D +ME + GPDFPTG +I G+  I+ AY  G+G IV+R   
Sbjct: 183 LGEVIDATIHMIDHPKVDVDKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IEL
Sbjct: 243 DIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+++R++
Sbjct: 303 KKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIIKRSQ 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA  R H++ GL   V+ LDEVV  IR S               N +D K+ I + 
Sbjct: 363 FDLNKAEKRLHLVEGLIRMVSILDEVVATIRASE--------------NKADAKENIKV- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++  
Sbjct: 408 -----------SFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  VK +   PRR+ + + +  +++E  + IV ED VV+V+  GY+KR  
Sbjct: 457 RTLFNLMKRELREVKKKFARPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + +      G+     RD+D +       T   +L F++LG V    +  L     +
Sbjct: 517 PRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDIRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   LS  +  E++  +     D  +  NL VV  T++G ++   R   S +   
Sbjct: 572 DIGEHLSQSLSNFSSDEKVIYVQIV--DAFAGENLVVV--TRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + +  Q  D++L ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGNDDEVVLISPVQFTDLMLISENGYALRFNLDDVPVLGAR-AAGVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADY 748
           L K D  I  A  +++++ Y
Sbjct: 687 L-KNDDKIKAAFFVNSNSWY 705


>gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL078PA1]
          Length = 844

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 282/748 (37%), Positives = 416/748 (55%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIINDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C       V +S  G + R+  +             G+    +    D+ I S  T+  
Sbjct: 512 PCW------VLLSATGLLARIDTA------------DGLPSDGDRATHDVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L + DE++ +VE   ++ ++   
Sbjct: 610 -SGAGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKNGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 818

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 283/752 (37%), Positives = 419/752 (55%), Gaps = 65/752 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+ 
Sbjct: 10  PPDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLR 69

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP
Sbjct: 70  PDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ +A   + + + +DTVDF PNYDG  +EPV L A +PN+LVNG  GIAVG
Sbjct: 130 AAMRYTESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNL EVV     +I  P+ DLDALM+ + GPD PTG  I+G  GI++AY TGR
Sbjct: 190 MATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDAYETGR 249

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 250 GSFKIRATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVKDLTDR 309

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 310 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+R    
Sbjct: 370 RFNVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS++QT+ IL+  L RLT   R ++  E + L  EI
Sbjct: 426 ----------------------FSLSDIQTQYILDTPLRRLTKFDRIELEAEKDRLNEEI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536
           +E   IL S + L  ++  EL +V  +    RRT ++E          L + D+ C    
Sbjct: 464 EELTRILDSDAELRKLVSAELAAVAKKFGNDRRTLLLESAGTPAAVVPLQVADDPC---- 519

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R   +V  A       R        D +      +    +   +S G
Sbjct: 520 --RVLLSATGLLAR---TVNDAPLADDGKRV-----KHDVIVSSAPATARGEIGVVTSAG 569

Query: 597 FVYKEKVWRLP-----IGSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  LP     + +P   G A +   +SL   E++  +     DESS     +  
Sbjct: 570 RLLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVSLEDDEQVVCLTTL--DESSPG---LAL 624

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
            T+ G V+R  + D+   N+     + L   D I+ +VE  T + D++  T   Q +R+P
Sbjct: 625 GTEQGVVKR-VVPDYPS-NKEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYP 682

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            + +R   GR + G+ G+ + +G +VI    V
Sbjct: 683 AAQVRP-QGRPAGGMAGVKVTEGAKVICFTAV 713


>gi|116670188|ref|YP_831121.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
 gi|116610297|gb|ABK03021.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
          Length = 832

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 293/774 (37%), Positives = 412/774 (53%), Gaps = 105/774 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +VK A
Sbjct: 21  IVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDRGHVKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 140 AAAALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +I NP+  L+ LM  + GPD PTG  I+G  GI++AYATGRGS   R    
Sbjct: 200 VEVISAARHLIANPEATLEDLMRFVPGPDLPTGGRIVGLDGIRDAYATGRGSFKTRAKVE 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR+ G R+VIEL
Sbjct: 260 VEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGLRLVIEL 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L  +V  R  VV RRT 
Sbjct: 320 KNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLLSVYVDHRINVVRRRTA 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM                
Sbjct: 380 FRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLM---------------- 423

Query: 435 DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                      ++Y L+E+Q   ILELRL +LT   R ++  E + L  EI E   IL S
Sbjct: 424 -----------SIYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLKREIAELEAILGS 472

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL  ++  EL  + ++  TPRRT ++E             E +  TV+ L        
Sbjct: 473 DQRLRELVSDELGEIAEKYGTPRRTVLLES------------EAVSPTVAAL-------- 512

Query: 554 SVYRAQRRGGKGR-------------------SGVVMR--------------DEDFVTDL 580
               A  RGGKG+                   SG + R                D    +
Sbjct: 513 ----AAARGGKGKAAPLALEIADDPCWAILTASGQIARTSNQEPLTESGPRSKHDVFRSV 568

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIM 634
              S    +   +SLG + + +V  +P+  P       A G    + ++L +GE +    
Sbjct: 569 VKTSARGEIAAVTSLGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKDFITLLKGETLVAFA 628

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
           P         +  +   T  G V+R +  D+  +NR     + L  +D ++ VE    ++
Sbjct: 629 PL--------DTVLAIGTAQGIVKRVQ-PDY-PLNREDWEVIALKDKDTVVGVEPAGADD 678

Query: 695 -DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
            D++  T+  Q +RF  + +R   GR + G+ GI L  GDQV+    V   D D
Sbjct: 679 VDLVFLTRQAQLLRFSAANVRP-QGRTAGGMAGIKLGAGDQVLFFGTVAPGDED 731


>gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 979

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 327/955 (34%), Positives = 490/955 (51%), Gaps = 110/955 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKYAHENLVSK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVADKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI------------------C 753
             + F  RN +GV+ + L  G+Q+ S+  V   + +Y E I                   
Sbjct: 690 PELEFTDRNILGVQLVPLKSGNQIKSIRFV--DNYEYKEFIIGINKKGNIKTFSNMNSNS 747

Query: 754 YMK-HMSAQRRLIS----GDTEEITSLKNDSSVEGNISE----ERCQELKLK-------- 796
           Y K  +++ R +I+    G   +  +    ++ E NIS+        EL +K        
Sbjct: 748 YEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFG 807

Query: 797 ----EQFILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               + F+   S +G  K+TS  +F    +N+     +            LV V    +N
Sbjct: 808 KIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPK-------DELVNVDINFEN 860

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 861 ATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +    +   ++ L S 
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTL--EAYNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + I   K     E NI + + Q
Sbjct: 932 YEKLILESKQKEKAEVNIEDIKLQ 955


>gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 979

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 327/955 (34%), Positives = 490/955 (51%), Gaps = 110/955 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVADKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI------------------C 753
             + F  RN +GV+ + L  G+Q+ S+  V   + +Y E I                   
Sbjct: 690 PELEFTDRNILGVQLVPLKSGNQIKSIRFV--DNYEYKEFIIGINKKGNIKTFSNMNSNS 747

Query: 754 YMK-HMSAQRRLIS----GDTEEITSLKNDSSVEGNISE----ERCQELKLK-------- 796
           Y K  +++ R +I+    G   +  +    ++ E NIS+        EL +K        
Sbjct: 748 YEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFG 807

Query: 797 ----EQFILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               + F+   S +G  K+TS  +F    +N+     +            LV V    +N
Sbjct: 808 KIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPK-------DELVNVDINFEN 860

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 861 ATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +    +   ++ L S 
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTL--EAYNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + I   K     E NI + + Q
Sbjct: 932 YEKLILESKQKEKAEVNIEDIKLQ 955


>gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
 gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 979

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 327/955 (34%), Positives = 490/955 (51%), Gaps = 110/955 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVADKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI------------------C 753
             + F  RN +GV+ + L  G+Q+ S+  V   + +Y E I                   
Sbjct: 690 PELEFTDRNILGVQLVPLKSGNQIKSIRFV--DNYEYKEFIIGINKKGNIKTFSNMNSNS 747

Query: 754 YMK-HMSAQRRLIS----GDTEEITSLKNDSSVEGNISE----ERCQELKLK-------- 796
           Y K  +++ R +I+    G   +  +    ++ E NIS+        EL +K        
Sbjct: 748 YEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFG 807

Query: 797 ----EQFILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               + F+   S +G  K+TS  +F    +N+     +            LV V    +N
Sbjct: 808 KIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPK-------DELVNVDINFEN 860

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 861 ATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +    +   ++ L S 
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTL--EAYNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + +   K     E NI + + Q
Sbjct: 932 YEKLVLESKQKEKAEVNIEDIKLQ 955


>gi|291550230|emb|CBL26492.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus torques L2-14]
          Length = 746

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 266/727 (36%), Positives = 412/727 (56%), Gaps = 27/727 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 4   ESQIIRTEYSDLMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYD+L  MAQD+    +L++G GNFGS++GD  AA RYTE
Sbjct: 64  KSARIVGDTMGKYHPHGDSSIYDSLVVMAQDFKKGQVLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL K+ +DF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+IP
Sbjct: 124 ARLTKFTQEVCLADLDKNVIDFGPNFDETEKEPLVLPMRVPNLLINGAEGIAVGMATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EVVD   A + N  I    LM+ I+GPDFPTG +++ +  +   Y +G+G I +R
Sbjct: 184 THNLCEVVDAVKAYMKNDKITTKQLMKYIKGPDFPTGGIVVNKDDLPAIYESGQGKIKLR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E+  G ++Q+V+TEIPY +  A +   L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 244 GKVEVEELKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVESKKTTDIVDISNQSSKEGI 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F+ E+
Sbjct: 304 RIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLSLKQIIEHHVDFQFEL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K R+++ V  GL  A   +D ++ I+R S + + AR  L+         K
Sbjct: 364 ATRKYTTLLGKEREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVNGETENIKFK 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   S+ +      +  +E Q  AILE+RL RL GL  + ++ E       I    
Sbjct: 424 --------SAISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEKTLENIARYE 475

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   + G+I +EL S K E    RRT +      + +E  I  + +V  +   GY 
Sbjct: 476 DILNNYDSMAGVIMEELDSYKKEFGRKRRTVVENAEEAVFEEKKIEEQQVVFLMDRFGYA 535

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V   VY   +           ++  ++     +     +  F+  G +++ KV  LP 
Sbjct: 536 KTVDTGVYERNKEAAD-------KENKYIVHCMNIG---KLCLFTDEGKMHQVKVLDLPH 585

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ + +  E    +M   E++  ++ L  +FAT  G ++R   S+F Q+
Sbjct: 586 GKFRDKGIPIDNVSNYSSSEE-QIVMICEEEQMRYSKL--LFATAQGMIKRVDGSEF-QV 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++    A KL   D +++V+  T+  +++L TK G  +RF +SA      + +VGVRGI 
Sbjct: 642 SKRTIAATKLQEEDRLVAVKVVTEYQNVVLQTKNGYFLRF-LSADVPEKKKAAVGVRGIK 700

Query: 729 LAKGDQV 735
           L K D++
Sbjct: 701 LQKKDEL 707


>gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
          Length = 844

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 282/748 (37%), Positives = 416/748 (55%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C       V +S  G + R+  +             G+    +    D+ I S  T+  
Sbjct: 512 PCW------VLLSATGLLARIDTA------------DGLPSDGDRATHDVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLKKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L + DE++ +VE   ++ ++   
Sbjct: 610 -SGAGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKNGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA2]
 gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL092PA1]
          Length = 844

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 282/748 (37%), Positives = 416/748 (55%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAATSAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C       V +S  G + R+  +             G+    +    D+ I S  T+  
Sbjct: 512 PCW------VLLSATGLLARIDTA------------DGLPSDGDRATHDVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L + DE++ +VE   ++ ++   
Sbjct: 610 -SGAGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKNGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202]
 gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA2]
 gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA1]
 gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA1]
 gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL086PA1]
 gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA1]
 gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA1]
 gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA1]
 gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA1]
 gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA1]
 gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA2]
 gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA2]
 gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 844

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 282/748 (37%), Positives = 416/748 (55%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C       V +S  G + R+  +             G+    +    D+ I S  T+  
Sbjct: 512 PCW------VLLSATGLLARIDTA------------DGLPSDGDRATHDVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L + DE++ +VE   ++ ++   
Sbjct: 610 -SGAGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKNGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|161507593|ref|YP_001577547.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
 gi|160348582|gb|ABX27256.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
          Length = 818

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/719 (37%), Positives = 412/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLNKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D S  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 KMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRAKTSIQEIRGHRQEIVTTEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                  Y   ++       
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK------------------YKFTAN------- 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R  L   I +EL +VK E
Sbjct: 418 -QAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT I E    ++ DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 477 FASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST +++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F   +   N    + AT  G +++ +L++ +Q  R+ K     A+KL ++D +L
Sbjct: 592 IIRVFVFDSLDIKKN---FILATNDGYIKQLELTN-LQPTRTYKSRAMTAIKLKNKDSML 647

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              ++   T + +I L T     VR+ IS I   +G  +VGV+ ++L   D ++   +V
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPT-SGSKAVGVKSVNLKDDDYIVGYVLV 705


>gi|328466148|gb|EGF37307.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 818

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/719 (37%), Positives = 412/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLNKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D S  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 KMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRAKTSIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKXADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                  Y   ++       
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK------------------YKFTAN------- 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R  L   I +EL +VK E
Sbjct: 418 -QAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT I E    ++ DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 477 FASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST +++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F   +   N    + AT  G +++ +L++ +Q  R+ K     A+KL ++D +L
Sbjct: 592 IIRVFVFDSLDIKKN---FILATNDGYIKQLELTN-LQPTRTYKSRAMTAIKLKNKDSML 647

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              ++   T + +I L T     VR+ IS I   +G  +VGV+ ++L   D ++   +V
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPT-SGSKAVGVKSVNLKDDDYIVGYVLV 705


>gi|16329694|ref|NP_440422.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
 gi|1652178|dbj|BAA17102.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 944

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/516 (46%), Positives = 333/516 (64%), Gaps = 33/516 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 35  IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 94

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 95  RVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 154

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L+ + +  VDF  N+D S +EP V+ A+ P +L+NG  GIAVGMAT+IP HN
Sbjct: 155 APIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHN 214

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG + +I+ PD+    L ++I GPDFPTG  IL   GI  AY TGRG I +RGVS
Sbjct: 215 LGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQAYQTGRGLIPVRGVS 274

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           HIE      K S +R  IV+TE+P+QVNKAA +EKIA LV + ++  I+DLRDESDR G 
Sbjct: 275 HIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTGM 334

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A  + IL +LYR T LQS F V  +AL   +P + +L  IL+ F+ FRE+ 
Sbjct: 335 RVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMSLRQILQEFLQFREDT 394

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+ +  L + R R  +L GL I + NLD ++ I+RF+ +  TA+ +L +R        
Sbjct: 395 LLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQER-------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + +S  Q  AIL + + R+TGL R+ ++ E   L   I++  
Sbjct: 447 ------------------LGISLQQGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLE 488

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
            ++  R   L  +K+EL  +K +    RRT+I++G+
Sbjct: 489 TLIGDRQERLKALKKELRGLKKKFADERRTKILQGM 524


>gi|260101485|ref|ZP_05751722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
 gi|260084699|gb|EEW68819.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
          Length = 818

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 273/719 (37%), Positives = 412/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLNKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D S  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 KMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRAKTSIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                  Y   ++       
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK------------------YKFTAN------- 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R  L   I +EL +VK E
Sbjct: 418 -QAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT I E    ++ DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 477 FASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST +++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F   +   N    + AT  G +++ +L++ +Q  R+ K     A+KL ++D +L
Sbjct: 592 IIRVFVFDSLDIKKN---FILATNDGYIKQLELTN-LQPTRTYKSRAMTAIKLKNKDSML 647

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              ++   T + +I L T     VR+ IS I   +G  +VGV+ ++L   D ++   +V
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPT-SGSKAVGVKSVNLKDDDYIVGYVLV 705


>gi|78211563|ref|YP_380342.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9605]
 gi|78196022|gb|ABB33787.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9605]
          Length = 822

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 281/750 (37%), Positives = 425/750 (56%), Gaps = 64/750 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  +L+++G+DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG VA+I  P++  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLVALIRKPELSDEKLLELIPGPDFPTGGEVLISSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E     K    R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A    +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ FRE
Sbjct: 303 GMRVVVELRRDADPGKVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQTFLDFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEANDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL+ L  + + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELDELRAKRQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL  +K    TPRRTR+VEG       D ++ E       +  
Sbjct: 457 LKLLLDNRDQLLDAMVTELKGLKKRFSTPRRTRLVEG------GDALMAERAASQRPNTE 510

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVV------------MRDEDFVTD-------LFIVSTHT 587
            +++  L+      R      G V            + D   V D       +  +    
Sbjct: 511 LLRQQALAALPGDGRVLIQADGQVKIFTPQVLGRLHLNDPCPVGDAPSPARVILPIEPPP 570

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L  S+ G + + + W      P    + L   L    G+ I +++  P    + + L 
Sbjct: 571 RLLAVSAGGRIAQVR-WEFAGQQPGPIDRFLPTGLD---GDPIVSLLSLP--SQNIDELS 624

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   +  G  +R  +S+ + ++      +KL    E+ +   C  +  ++L + +G+ +R
Sbjct: 625 LGLLSSDGRFKRLPVSEVVDLSGRATSVLKLKEGVELNNAVICRNQGTLVLISDIGRLLR 684

Query: 708 FPISAIRV-FAGRNSVGVRGISLAKGDQVI 736
             I+   +   GR + G   + L  G+Q++
Sbjct: 685 LRINEESLPLMGRLAQGPMTMRLLPGEQIV 714


>gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
 gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
          Length = 979

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 326/956 (34%), Positives = 491/956 (51%), Gaps = 112/956 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVSDKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI------------------C 753
             + F  RN +G++ + L  G+Q+ S+  V   + +Y E I                   
Sbjct: 690 PELEFTDRNILGIQLVPLKSGNQIKSIRFV--DNYEYKEFIIGINKKGNIKTFSNMNSNS 747

Query: 754 YMK-HMSAQRRLIS----GDTEEITSLKNDSSVEGNISE----ERCQELKLK-------- 796
           Y K  +++ R +I+    G   +  +    ++ E NIS+        EL +K        
Sbjct: 748 YEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFG 807

Query: 797 ----EQFILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVN-D 849
               + F+   S +G  K+TS  +F    +N+     +      IN          +N +
Sbjct: 808 KIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKDELIN--------VDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELINVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +    +   ++ L S 
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTL--EAYNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + I   K     E NI + + Q
Sbjct: 932 YEKLILESKQKEKAEVNIEDIKLQ 955


>gi|325265377|ref|ZP_08132101.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
 gi|324029378|gb|EGB90669.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
          Length = 748

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 265/727 (36%), Positives = 412/727 (56%), Gaps = 27/727 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 5   ESQIIRTEYSEVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY++L  MAQD+    +L++G GNFGS++GD  AA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGKILVDGHGNFGSIEGDGAAAMRYTE 124

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL K+ VDF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+IP
Sbjct: 125 ARLTKFTQEAYLGDLDKNIVDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D   A + N  I    LM  I+GPDFPTG +++ +  + N Y TG+G I IR
Sbjct: 185 THNLSEVLDAVKAYMKNDQISTKQLMRYIKGPDFPTGGIVVNKDDLLNIYETGQGKIKIR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E+  G ++Q+V+TEIPY +  + +   L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 245 GKVEVEEQKGGKKQLVITEIPYTMIGSGIGKFLNDVCGLVESKKTNDIVDISNQSSKEGI 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 305 RIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANDRPETLGLKAIIEHHVDFQFEL 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+   +L K ++R+ V  GL  A   +D ++ I+R S + + AR  L+  S    +IK
Sbjct: 365 MTRKYTTMLAKEQERSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLV--SGVTENIK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   SS +      +  +E Q  AILE+RL +L GL  + ++ E       I    
Sbjct: 423 ------FKSSISKKMAALLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNISRYE 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I +EL S K E    RRT I      + +E  I  +++V  +   GY 
Sbjct: 477 DILNNYDSMANLIMEELDSYKREYGRKRRTAIENAEEAVFEEKKIEEQEVVFLMDRFGYA 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K + ++ Y   +      +  V+                 +  F+  G +++ KV  LP 
Sbjct: 537 KTIDVTAYERNKEAADSENKYVVH----------CMNTGKICIFTDTGRMHQAKVLDLPY 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ + +  E    +M    ++  +  L  +FATK G +++ + ++F Q+
Sbjct: 587 GKFRDKGTPIDNLTNYSSSEE-QIVMVCDAEQMRFAKL--LFATKQGMIKKVEGTEF-QV 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +    A KL   D ++SV   T+  +I+L TK G  +RFP   I     + +VGVRGI 
Sbjct: 643 AKRTIAATKLQEEDILISVSVVTENQNIVLQTKGGYFLRFPAEEIPE-KKKGAVGVRGIK 701

Query: 729 LAKGDQV 735
           L K D++
Sbjct: 702 LQKKDEL 708


>gi|116627478|ref|YP_820097.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
 gi|116100755|gb|ABJ65901.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
          Length = 806

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 272/724 (37%), Positives = 412/724 (56%), Gaps = 70/724 (9%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 68  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 PWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVYMIDHPSA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + IE+  G ++QI+VTEI
Sbjct: 188 KLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTEIEQLKGGKKQIIVTEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY VNKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A +  ILN L +YT
Sbjct: 248 PYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIELKKDADSQTILNYLLKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K+   KA  R H++ GL 
Sbjct: 308 DLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARSKFDKEKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDEV+ +IR S N   A +E ++ S++                          SE
Sbjct: 368 RVISILDEVISLIRASENKSDA-KENLKVSYD-------------------------FSE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++NE  +L  +I     I+     L  ++K+EL  +K +
Sbjct: 402 EQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKK 461

Query: 512 LDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ +      ++++    IV E+  V+++  GYVKR     + A +    G+   
Sbjct: 462 FGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIEEVGK--- 518

Query: 570 VMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVWRLPIGS-PQARGKALINILSL 624
             RD+D   DL +V    +T   ++F +    +Y+      PI   P  R K L      
Sbjct: 519 --RDDD---DLILVQQAKTTQHLLIFTNQANVIYR------PIHELPDIRWKDL------ 561

Query: 625 NQGERIT-TIMPFPEDES--------SWNNLYVVFATKHGNVRRNKLSDFIQI----NRS 671
             GE ++ TI  F +DE          +     +  TK G ++R +  +F       ++S
Sbjct: 562 --GEHLSQTITNFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKS 619

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            K     D  D I++V T  Q +DI++ T+ G  +RF    + V  G  +VGV+ I+L  
Sbjct: 620 VKYGKLKDESDVIVTV-TPIQLDDIMIITQKGYALRFNADEVPV-VGAKAVGVKAINLKD 677

Query: 732 GDQV 735
            D+V
Sbjct: 678 DDKV 681


>gi|314923403|gb|EFS87234.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL001PA1]
          Length = 844

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 283/748 (37%), Positives = 409/748 (54%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+PD DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E   
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERGE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I+S  + L  ++  EL  V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C V       ++ +     +P    RA                    D+ I S  T+  
Sbjct: 512 PCWVLLSATSLLARIDTADGLPSGGDRATH------------------DVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L   DE++ +VE   ++ ++   
Sbjct: 610 -SGEGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKDGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
          Length = 979

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 284/750 (37%), Positives = 417/750 (55%), Gaps = 60/750 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVVDKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIV 741
             + F  RN +GV+ + L  G+Q+ S+  V
Sbjct: 690 PELEFTDRNILGVQLVPLKSGNQIKSIRFV 719



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELINVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +    +   ++ L S 
Sbjct: 875 FLATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTL--EAYNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + I   K     E NI + + Q
Sbjct: 932 YEKLILESKQKEKAEVNIEDIKLQ 955


>gi|73921620|sp|Q5XCJ9|PARC_STRP6 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 819

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 619

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 620 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 678 KSAGVKGINLKNDDSLAS 695


>gi|50914075|ref|YP_060047.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
 gi|50903149|gb|AAT86864.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
          Length = 821

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 271/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 245 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 305 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 365 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 413 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 459 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 519 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 565 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 621

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 622 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 679

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 680 KSAGVKGINLKNDDSLAS 697


>gi|282854006|ref|ZP_06263343.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|282583459|gb|EFB88839.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|314966750|gb|EFT10849.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981083|gb|EFT25177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091909|gb|EFT63885.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093334|gb|EFT65310.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL060PA1]
 gi|315103410|gb|EFT75386.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA2]
 gi|327327575|gb|EGE69351.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 844

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 284/748 (37%), Positives = 412/748 (55%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+PD DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E   
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERGE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I+S  + L  ++  EL  V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C       V +S  G + R+  +             G+    +    D+ I S  T+  
Sbjct: 512 PCW------VLLSATGLLARIDTA------------DGLPSGGDRATHDVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L   DE++ +VE   ++ ++   
Sbjct: 610 -SGEGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKDGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 808

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 267/734 (36%), Positives = 422/734 (57%), Gaps = 41/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++Q+W LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ KDTV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDISVSQLMKYVKGPDFPTGGIIQGIDGIKKAYETGKGRIVVRSTVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R++++VTEIPY+VNK+A+++KI EL  +KR+  I ++RDE+DR G R+ IELK
Sbjct: 245 TETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  ++D ILN LY+ T LQ  ++ NMVA++  +P+   +  I+ +++  + +VV +RT+Y
Sbjct: 305 KDVNSDAILNFLYKNTDLQISYNFNMVAISDGRPKLMGIREIIDSYLNHQIDVVTKRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL  A++ LDEV+ IIR S N + A+  L+                 
Sbjct: 365 DLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I +  +IL +  
Sbjct: 408 ---------AEFDFTEEQAEAIVTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    T R +RI   + +++   E  +  E+ ++++S  GY+KR  +
Sbjct: 459 ALLNVIKDELKEIRTRFKTERLSRIEAEIAEIKISKEVIVPSEETILSLSRDGYIKRTSV 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A R    G     +++ D +      +T    L F++ G      V +LP    + 
Sbjct: 519 RSFNANRVDEVG-----LKEGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  ++ +   E +  +  F E +   N  Y++ ATK+G +++++L  F +  R  K
Sbjct: 574 LGQHISQLVPIENDEYVLDV--FTEPDFKQNADYIM-ATKNGMIKKSELELF-KTTRFNK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             IAMKL   DE+++V     +  I + T  G  + +    +    G  + GV+ I+L K
Sbjct: 630 PLIAMKLKDNDELINVMRIEADQLITIVTHTGMSLTYSTDELSS-TGLRAAGVKSINL-K 687

Query: 732 GDQVISMAIVLHAD 745
            D V+ M  ++  +
Sbjct: 688 DDDVVEMTQLIQPN 701


>gi|290580371|ref|YP_003484763.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
 gi|254997270|dbj|BAH87871.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
          Length = 812

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 276/747 (36%), Positives = 417/747 (55%), Gaps = 65/747 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 ADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + IE 
Sbjct: 181 IDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTEIEN 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV TEIPY+VNKAA+++KI ++    ++  IA++RDESDR+G R+ IELK+ A
Sbjct: 241 LKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               ILN L++YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+K+   
Sbjct: 301 DEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARSKFDKE 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++               
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD--------------- 404

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE Q  AI+ L+L RLT      + NE   L   I     I+     + 
Sbjct: 405 ----------FSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +   PR + +      ++++    IV E+  V+V+  GY+KR     +
Sbjct: 455 NVMKRELREVKKKFGNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G+     RD+D V  +    T   +L F++LG V    +  L       R K
Sbjct: 515 NASTVEELGK-----RDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHEL----ADIRWK 565

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVF-----------ATKHGNVRRNKLSDF 665
            +   LS N       I  F  DE     LYV             AT  G ++R +  D 
Sbjct: 566 EIGEHLSQN-------ITNFATDEEI---LYVDLVDHFEEGTYYAATSLGQIKRFERRDL 615

Query: 666 IQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                  +++ K A      D+++ + +  + +D++L T  G  +RF I  + +  G  +
Sbjct: 616 TPWRSYKSKAVKYAKLKGDDDQVIRI-SPIKLDDVMLITARGYALRFNIEEVPI-VGPKA 673

Query: 722 VGVRGISLAKGDQVISMAIVLHADADY 748
            GV+ I+L +GD  ++ A + + D+ Y
Sbjct: 674 AGVKAINLKEGDS-LAAAFIANTDSIY 699



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 18/246 (7%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T+ G ++R     F   N S    +     D+++ ++      ++L+ T LG  +  
Sbjct: 498 VSVTRGGYIKRTSPRSF---NASTVEELGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYR 554

Query: 709 PI---SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ-RRL 764
           PI   + IR       +     + A  ++++ + +V H    ++E   Y      Q +R 
Sbjct: 555 PIHELADIRWKEIGEHLSQNITNFATDEEILYVDLVDH----FEEGTYYAATSLGQIKRF 610

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKL---KEQFILTVSEKGFGKRTSSYDFRISN 821
              D     S K+ +     +  +  Q +++   K   ++ ++ +G+  R +  +  I  
Sbjct: 611 ERRDLTPWRSYKSKAVKYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEVPIVG 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
               G++A +   + E  +L A F  N  D I +++ +G+L R+  N I + SRA +G+ 
Sbjct: 671 PKAAGVKAIN---LKEGDSLAAAFIAN-TDSIYILTQRGSLKRMSTNLIPVTSRAKRGLQ 726

Query: 882 IFSTAK 887
           +    K
Sbjct: 727 VLRDLK 732


>gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101]
 gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens SM101]
          Length = 979

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 284/750 (37%), Positives = 417/750 (55%), Gaps = 60/750 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVADKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIV 741
             + F  RN +GV+ + L  G+Q+ S+  V
Sbjct: 690 PELEFTDRNILGVQLVPLKSGNQIKSIRFV 719



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +    +   ++ L S 
Sbjct: 875 FLATAINPM-GRIASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLE--AYNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + +   K     E NI + + Q
Sbjct: 932 YEKLVLESKQKEKAEVNIEDIKLQ 955


>gi|7404425|sp|P73077|PARC_SYNY3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 920

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/516 (46%), Positives = 333/516 (64%), Gaps = 33/516 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 11  IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 71  RVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 130

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +L+ + +  VDF  N+D S +EP V+ A+ P +L+NG  GIAVGMAT+IP HN
Sbjct: 131 APIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG + +I+ PD+    L ++I GPDFPTG  IL   GI  AY TGRG I +RGVS
Sbjct: 191 LGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQAYQTGRGLIPVRGVS 250

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           HIE      K S +R  IV+TE+P+QVNKAA +EKIA LV + ++  I+DLRDESDR G 
Sbjct: 251 HIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTGM 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A  + IL +LYR T LQS F V  +AL   +P + +L  IL+ F+ FRE+ 
Sbjct: 311 RVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMSLRQILQEFLQFREDT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+ +  L + R R  +L GL I + NLD ++ I+RF+ +  TA+ +L +R        
Sbjct: 371 LLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQER-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + +S  Q  AIL + + R+TGL R+ ++ E   L   I++  
Sbjct: 423 ------------------LGISLQQGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLE 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
            ++  R   L  +K+EL  +K +    RRT+I++G+
Sbjct: 465 TLIGDRQERLKALKKELRGLKKKFADERRTKILQGM 500


>gi|167758062|ref|ZP_02430189.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
 gi|167663959|gb|EDS08089.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
          Length = 745

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/725 (36%), Positives = 404/725 (55%), Gaps = 29/725 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y KCA
Sbjct: 6   IIRTEYSDVMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYTE RL
Sbjct: 66  RIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IPTHN
Sbjct: 126 AKITQDAYLADLDKDIVDFMPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIPTHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV++   A + N DI    LM+ I+GPDFPTG +++ +  + N Y  G G I IRG  
Sbjct: 186 LGEVIEAVKAYMKNDDISTKQLMKYIKGPDFPTGGIVVNKDELLNIYEAGSGKIKIRGKV 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +E+  G + ++V+TEIPY +  A +   L  +  LV  K+  DI D+ ++S ++G R+V
Sbjct: 246 EVEEMKGGKNRLVITEIPYTMIGAGIGKFLNDVCALVESKKTSDIVDISNQSSKEGIRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRGA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+  R
Sbjct: 306 IELKRGADVENLTNMLYKKTRLEDTFGVNMLAVANGRPETMGLKKIIEHHVDFQFELATR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + + LL K +DR  +  GL  A   +D ++ I+R S + + A+  L          K   
Sbjct: 366 KYQNLLKKEQDRKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTENIKFK--- 422

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                SS +      +  +E Q  AILE+RL +L GL  + +  E       I    DIL
Sbjct: 423 -----SSISKKMAAMLRFTERQATAILEMRLYKLIGLELEALMKEHEETLKNIARYEDIL 477

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   +  +I  +L  +K E    RRT +      + +E+ I  +++V  +   GY K V
Sbjct: 478 NNYDSMAEVIMADLDKIKKEFARKRRTAVENAEEAVYEENKIEEQEVVFLMDRFGYAKTV 537

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             ++Y   +      +  V+                 +  F++ G +++ KV  LP G  
Sbjct: 538 DTNIYERNKEAADAENKHVLS----------CMNTGKLCIFTNTGKMHQVKVLDLPYGKF 587

Query: 612 QARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           + +G  + N+ + +   E I  I     D        ++FATK G +++ + ++F Q+ +
Sbjct: 588 RDKGLPIDNVSNYDSTQENIVYIC----DAEQMRYARLLFATKQGMIKKVEGNEF-QVAK 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               A KL   DE++SV+  T    ++L TK G  +RFP   +     + ++GVRGI L 
Sbjct: 643 RTIAATKLQPEDELISVQVVTDNQQVVLQTKEGYFLRFPAQEVS-GKKKGAIGVRGIKLR 701

Query: 731 KGDQV 735
           K D++
Sbjct: 702 KNDEL 706



 Score = 39.3 bits (90), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  +++G  K+    +F+++ R+   I AT +   +E   L++V  V D
Sbjct: 611 CDAEQMRYARLLFATKQGMIKKVEGNEFQVAKRT---IAATKLQPEDE---LISVQVVTD 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           N Q++L + +G  +R P  E+    +   GV
Sbjct: 665 NQQVVLQTKEGYFLRFPAQEVSGKKKGAIGV 695


>gi|84496203|ref|ZP_00995057.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382971|gb|EAP98852.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 816

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 279/756 (36%), Positives = 419/756 (55%), Gaps = 65/756 (8%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T +  + D+E    +  + +  EMQN++L Y+++VI  RA+PD+RDGLKPV RRILF M 
Sbjct: 6   TSNPQADDDENNGHVVDIDVGIEMQNAFLEYSVSVIHSRALPDVRDGLKPVQRRILFSMS 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VK +R+ G+VMGKYHPHG+ AIYDAL RMAQ +++RL L++G GNFGS+D
Sbjct: 66  EMGLRPDRGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +   L +DTVDF PNYD    +P VL A YPN+LVNG  G
Sbjct: 126 -DGPAASRYTEARLAPAALVMTTGLDEDTVDFVPNYDDQLLQPGVLPAAYPNLLVNGVSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG AT++P HNL EV+     +I +PD  LD LM+ + GPD P G  I+G  GI++AY
Sbjct: 185 IAVGFATSMPPHNLVEVISAARHLIAHPDCSLDDLMKFVPGPDLPLGGKIVGLDGIRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG+G+   R  + IEK +  +  IVVTE+PY V    ++E++  LV+ K++  I+D++D
Sbjct: 245 LTGKGTFKTRATTRIEKLTPRKSGIVVTELPYLVGPEKVIERMKTLVQGKKLQGISDVKD 304

Query: 302 ESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR+ G R+VIE+K G + + +L QL++ T ++  F +N VAL   +P+   L  +L+ 
Sbjct: 305 LTDRKHGLRMVIEVKNGFNPEAVLEQLFKLTPMEDSFGINNVALVDGQPQTLGLKDLLRH 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V FR  VV RRT Y L KA+D+ H+++GL IA+ ++DEV+++IR S +  TAR+ L   
Sbjct: 365 YVEFRILVVRRRTAYRLRKAQDQLHLVLGLLIAILDIDEVIQLIRTSDDTATARQRL--- 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                  +D+ D                LSE+Q   ILEL+L RLT   R ++ N+ + L
Sbjct: 422 -------RDVFD----------------LSELQANYILELQLRRLTKFSRLELENQRDEL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---------GLLDMEDED 531
             +I+E   IL     L  ++  EL  V  +  TPRRT ++E           L++ D+ 
Sbjct: 459 EKQIQELEAILGDEKLLQRMVSTELADVAKKYGTPRRTVLLESAGNPVSAAAPLEVSDDP 518

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
           C V       ++     + +P    RA+               D V      +    V  
Sbjct: 519 CWVLLSSTGLLARTSNAEPIPAEGPRAK--------------HDAVISAVRTTARGEVGL 564

Query: 592 FSSLGFVYKEKVWRLPI-----GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNN 645
            +S G + +     LP      G+P   G A L   + L +GE   T++    D      
Sbjct: 565 VTSRGRMIRISALELPTLPPLGGAPSLSGGAPLAAYVDLPRGEEPITVVSLDPDGPG--- 621

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +   T  G V+R   SD  + +    I++K D    + + +  T + D++  T   Q 
Sbjct: 622 --LALGTAQGIVKRVT-SDQPKSHDWEVISLK-DGDTVVGAGQVVTGDEDLVFVTSDAQL 677

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +RFP  A+R   GR+  G+ G+ L  G++V    +V
Sbjct: 678 LRFPAHAVRP-QGRSGGGIAGVRLTAGERVAFFGVV 712


>gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124]
 gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens ATCC 13124]
 gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
          Length = 979

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 284/750 (37%), Positives = 417/750 (55%), Gaps = 60/750 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y
Sbjct: 10  KDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  GIAVG++TNIP
Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +AY TG G + +R
Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSAYETGEGKVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I D+RDESDR G
Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      AD +L  LY+ T LQ   S NMVAL   KPE   L  I+  +V  
Sbjct: 310 IRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMGLKTIISHYVNH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A   L+ +    
Sbjct: 370 QKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L RLTGL     + E   L  +I
Sbjct: 426 ----------------------FGFTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    IL + S LLG+IK EL  V +     RRT ++    E  +D+  E+ IV ED++V
Sbjct: 464 KALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDL--EELIVAEDVMV 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  F+  G VY+
Sbjct: 522 TLSNEGFIKKLPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQ 578

Query: 601 -------EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                  +K W+        R + LI  LSL + E+I  +      E+   N    F T 
Sbjct: 579 IKCNSVADKKWK----DKGERLEDLIRGLSL-EDEKIIALESI---ENFLPNKCFKFITA 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISA 712
           +G +++  L  F+    S  +A+KL + D + SV    +Q+ +  +  +    + F +S 
Sbjct: 631 NGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSE 689

Query: 713 IRV-FAGRNSVGVRGISLAKGDQVISMAIV 741
             + F  RN +GV+ + L  G+Q+ S+  V
Sbjct: 690 PELEFTDRNILGVQLVPLKSGNQIKSIRFV 719



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 7/204 (3%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYV 648
           F + + F  K KV++ P    Q   ++ I+ L     + E I  + P  E      +L+V
Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDEIIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    + +IA K  + +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLG-EFNNQIAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI    V+    D D++     +   ++ L S 
Sbjct: 875 FLATAINPM-GRVASGVTGISLKDDNKVI-FGKVIPPSEDIDDKTLEA-YNDYKKELTSN 931

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
             + I   K     E NI + + Q
Sbjct: 932 YEKLILESKQKEKAEVNIEDIKLQ 955


>gi|153814923|ref|ZP_01967591.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|317500435|ref|ZP_07958659.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089558|ref|ZP_08338457.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847954|gb|EDK24872.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|316898190|gb|EFV20237.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404926|gb|EGG84464.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 747

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 265/728 (36%), Positives = 413/728 (56%), Gaps = 29/728 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 4   ESQIIRTEYSDLMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYTE
Sbjct: 64  KCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL KD VDF PN+D + +EP+VL  R PN+LVNG  GIAVGMAT+IP
Sbjct: 124 ARLTKFTQEVCLADLDKDVVDFGPNFDETEKEPLVLPMRVPNLLVNGAEGIAVGMATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D   A I N  I    LM+ I+GPDFPTG +++ +  + N Y TG+G I +R
Sbjct: 184 PHNLGEVIDAVKAYIKNDSITTKQLMKYIKGPDFPTGGIVVNKDDLINIYETGQGKIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G    E+  G ++Q+V++EIPY +  A +   L  +A LV  K+  DI D+ ++S ++G 
Sbjct: 244 GKVETEELKGGKKQLVISEIPYTMIGAGIGKFLNDVAGLVETKKTTDITDISNQSSKEGI 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V FR E+
Sbjct: 304 RIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGRPETLGLKKIIEHHVDFRFEL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ K LL K ++++ V  GL  A   +D ++ I+R S + + A+  L+      + + 
Sbjct: 364 ATRKYKTLLAKEQEKSEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLV------NGVT 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D I     SS +      +  +E Q  AILE+RL RL GL    +  E       I    
Sbjct: 418 DNIKF--KSSISKKMAVLLRFTERQAAAILEMRLYRLIGLEVQALIAEHEQTVKNIARYE 475

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I +EL S K+E    RRT I      + +E  I  +++V  +   GY 
Sbjct: 476 DILNNYDSMAQVIVEELESFKEEYAKARRTVIENAEEAVFEEKKIEEQEVVFLMDRFGYA 535

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + V ++VY   +      +  ++                 +  F++ G +++ KV  LP 
Sbjct: 536 RIVDVAVYERNKEAADSENKYIVH----------CMNTGKICIFTNSGKMHQVKVIDLPY 585

Query: 609 GSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+ + +   E+I ++     D        ++F+T  G V++   S+F Q
Sbjct: 586 GKFRDKGVPIDNVSNYSSSDEQIVSVY----DSEQMRFAMLLFSTAQGMVKKVSGSEF-Q 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +   +A KL   D ++ V    +   ++L TK G  +RFP + + +   + +VGVRGI
Sbjct: 641 VAKRTILATKLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPATEVPI-KKKAAVGVRGI 699

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 700 RLQKKDEL 707



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L  + +G  K+ S  +F+++ R+   I AT   K+ E  +LV V  VN+N  ++L + 
Sbjct: 621 MLLFSTAQGMVKKVSGSEFQVAKRT---ILAT---KLQEEDSLVDVRVVNENKHVVLQTK 674

Query: 859 KGTLIRVPVNEIRIASRATKGV 880
            G  +R P  E+ I  +A  GV
Sbjct: 675 NGYFLRFPATEVPIKKKAAVGV 696


>gi|306827497|ref|ZP_07460780.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
 gi|304430295|gb|EFM33321.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
          Length = 819

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 619

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 620 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 678 KSAGVKGINLKNDDSLAS 695


>gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
 gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
          Length = 959

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 275/740 (37%), Positives = 425/740 (57%), Gaps = 48/740 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  VSI + M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y 
Sbjct: 10  DNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDKPYY 69

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R  LI+G GN+GS DGD  AA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQDGDNAAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  L+ D+ K  VD   NY  S +EP VL A+YPN+LVNG  GIAVG+ATNIP 
Sbjct: 130 ARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAFGIAVGLATNIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +A ID  DID   LME I+GPD PTG +I+G+  + +AY TG G + +R 
Sbjct: 190 HNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGGIIIGKKSLLSAYETGEGRVTLRA 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            + IE+    R  IV+TE PY+ +KA +L+ I+E+  +K+    +  I+D+RDESDR G 
Sbjct: 250 KTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESISDIRDESDRTGV 309

Query: 309 RVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIE K+ +   + D +L  L++ T +Q   S NMVAL   KP+   L  IL  ++  +
Sbjct: 310 RAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAKGKPQTMGLKTILYHYIEHQ 369

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRT+  +  A  R H++ G   A+  +DE++++IR S + + A + L++      
Sbjct: 370 KDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDAGKNLIE------ 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +EVQ+ AILEL L RLTGL       E   L  EIK
Sbjct: 424 --------------------GFGFTEVQSEAILELMLYRLTGLEIVAFEKEHKELEKEIK 463

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVS 543
               ILSS   LL IIK+EL  ++++    R+T IVE      +  E+ IV ED+V+T+S
Sbjct: 464 RLNKILSSEKELLKIIKKELTEIREKYGDNRKTTIVENDDEAKINLEELIVEEDIVITMS 523

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + G++KR+PL  Y    R       +  R+ DF   L   +T ++++FF+  G +Y+ K 
Sbjct: 524 NEGFIKRIPLKTY---NRINAEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKG 580

Query: 604 WRLPIGSPQARG---KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             +P    + +G   +++I  L ++Q E I  +    +   S N   ++F T  G V++ 
Sbjct: 581 INIPEFKWKDKGERIESIIKTLDVSQ-ESIVAVYSANDFMESQN---LIFFTDRGIVKKT 636

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV-FAG 718
            +  F   N +  +A+KL + + ++ V    ++  +  +  +  + ++F +   ++  + 
Sbjct: 637 GIDKF-NTNYTKIMALKLKNEERVIKVIIAPKDRKETFINIETEKGLKFVVEEPKIEESD 695

Query: 719 RNSVGVRGISLAKGDQVISM 738
           RN +G++ ++L+  D++IS+
Sbjct: 696 RNIMGLQLVNLSPKDRIISI 715



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVE-TCTQENDILLTTKL 702
           N+Y  F TK G V++  L +F + +    IA K  S +D +++V+ +   E +I++ TK 
Sbjct: 811 NIY--FFTKKGMVKKTSLKEF-EGDYFSTIAYKFKSDKDILINVQLSKNTEEEIIMVTKR 867

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             C+RF    I    G+ + GV GISL + D+VI   I+
Sbjct: 868 AMCIRFQSDTINPM-GKVASGVTGISLKEDDEVIYSEIL 905


>gi|94990280|ref|YP_598380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
 gi|94543788|gb|ABF33836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
          Length = 824

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 8   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 68  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 128 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 188 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 248 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 308 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 368 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 416 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 462 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 521

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 522 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 567

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 568 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 624

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 625 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 682

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 683 KSAGVKGINLKNDDSLAS 700


>gi|58337413|ref|YP_193998.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus NCFM]
 gi|227904046|ref|ZP_04021851.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|58254730|gb|AAV42967.1| DNA topoisomerase IV subunit C [Lactobacillus acidophilus NCFM]
 gi|227868065|gb|EEJ75486.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 816

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 273/719 (37%), Positives = 412/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG YHPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNYHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKDTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +P+ 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPHNLGEVIDATIYLLKHPNA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM  ++GPDFPTGA+I+G  GIK AY TGRG I +R  ++I+   G R++IVVTEI
Sbjct: 203 SLEDLMNYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRAKTNIQDIRGHRQEIVVTEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P++VNK+ +++KI E+   K I  IA++RDE+DR G  +VIELK+ A +  ILN L++ T
Sbjct: 263 PFEVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADSQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEAVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+                  +SY          +E
Sbjct: 383 HAMDILDKVIKTIRASKNKSDAKKNLI------------------ASYD--------FTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    D +  E   L    ++   +LS R  L   I +EL +VK E
Sbjct: 417 NQAEAIVSLQLYRLTNTDVDALIAEQTKLNKLAEKYRKLLSDRKTLEKEIIKELSTVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
            D PRRT+I E    +E DE  +V ++ V V +S  GY+KR  +  Y++      G    
Sbjct: 477 FDNPRRTQISEQSAKVEIDEKALVADEKVRVLISRDGYLKRSSIRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLSSDEK 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F +  ++ N L    AT  G +++ +L++ +Q  R+ +     A+ L S + +L
Sbjct: 592 IIRVFAFDDLNTNSNFL---LATNDGYIKQLELAN-LQPTRTYRSRAMSAINLKSNNSLL 647

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
               +     + +I L T     VR+ I+ +   +G  + GV+ ++L   D ++   +V
Sbjct: 648 VGVDLIAPNADKEITLFTNRAYAVRYNINEVPS-SGAKAAGVKSVNLKDDDYIVGYVLV 705


>gi|225868404|ref|YP_002744352.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701680|emb|CAW99003.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 822

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/746 (36%), Positives = 421/746 (56%), Gaps = 61/746 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A
Sbjct: 7   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 67  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 127 SEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+G +V+R  + 
Sbjct: 187 SEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKGRVVVRSRTE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G R+QI+VTE+PY+VNKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 247 IEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+++
Sbjct: 307 KDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRSQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDE++ +IR S N   A +E ++ S++            
Sbjct: 367 DKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADA-KENLKVSYD------------ 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E + L   I     I+ + +
Sbjct: 414 -------------FSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEA 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +      ++++    I+ E+  V+V+  GY+KR   
Sbjct: 461 TMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSP 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F++LG V    V+ L       
Sbjct: 521 RSFHASSLEEIGK-----RDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYEL----TDL 571

Query: 614 RGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLSD 664
           R K +        GE ++  I  F  DE         S+        T+HG ++R +  +
Sbjct: 572 RWKDI--------GEHLSQAITNFAADEMVIYAELIQSFEQGLYASVTQHGLIKRFERKE 623

Query: 665 FIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +      ++S K A    + D I+++     E D+LL T+ G  +RF    I +  G  
Sbjct: 624 MMPWRSYKSKSIKYAKLKAADDRIIAIAPIVME-DLLLVTQQGYALRFSSQEIPI-QGLK 681

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA 746
           + GV+GI+L   D ++S A  ++AD+
Sbjct: 682 AAGVKGINLKAQDYLVS-ACPVNADS 706


>gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 956

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 308/906 (33%), Positives = 479/906 (52%), Gaps = 76/906 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP VL A+YPN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ D++   L  LY+ T LQS  S NMVAL   KP+   L  +LK +V  
Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++    
Sbjct: 369 QKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTV 542
            +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T+
Sbjct: 463 NKLTKILKSEKELLKVIKKELIEVKETYNDKRRTAIIEDDEKAKIDVEEIIVEEDVVLTL 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ K
Sbjct: 523 SNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIK 579

Query: 603 VWRLPIGSPQARGKALINIL-SLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRN 660
           V  +P    + +G  L  I+ +++  E  T I  F  ED ++  ++  +F T  G +++ 
Sbjct: 580 VINIPEFKWKEKGVKLDEIIKTIDLSE--TIIEAFSIEDFTAQKDM--LFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQKGLSFNIEEPSLEP-V 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSL 775
            RN +G +   +   D   S+  V   D +Y+ +  Y+         IS   D +   SL
Sbjct: 694 DRNIIGYKLFDILPND---SIKKVDFCD-NYEYKSFYVNISKEGLITISDLKDNKSHISL 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             DSS                 + ++   ++G      ++  +     G  I A    KI
Sbjct: 750 FTDSS-----------------KTLVLFDDEGKAYYIPAFMLQSIKEEGVNISAFTGDKI 792

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + + A ++ F   ++  I   S+KG + R  + E++I   +T+  V     KD+++VS+ 
Sbjct: 793 SLLNA-ISTFRFEEDISIYFSSEKGLIKRTLLGELKIEGNSTQ--VYKFKHKDDKLVSI- 848

Query: 896 RIRESE 901
            I+E E
Sbjct: 849 LIKEHE 854



 Score = 37.7 bits (86), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 23/184 (12%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+ T VLF        + K + +P    Q+  +  +NI +   G++I
Sbjct: 740 LKDNKSHISLFTDSSKTLVLFDD------EGKAYYIPAFMLQSIKEEGVNISAFT-GDKI 792

Query: 631 T-----TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +     +   F ED S      + F+++ G ++R  L + ++I  +     K   +D+ L
Sbjct: 793 SLLNAISTFRFEEDIS------IYFSSEKGLIKRTLLGE-LKIEGNSTQVYKFKHKDDKL 845

Query: 686 S---VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
               ++   ++ +IL+ T+    +RF   A+    G+ + GV GISL   D+VI   I+ 
Sbjct: 846 VSILIKEHEEQKNILIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILALIID 904

Query: 743 HADA 746
             D 
Sbjct: 905 ENDT 908


>gi|323466443|gb|ADX70130.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           H10]
          Length = 818

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 272/719 (37%), Positives = 413/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLNKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D S  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 KMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRAKTSIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                  Y   ++       
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK------------------YKFTAN------- 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +L+ R  L   I +EL +VK E
Sbjct: 418 -QAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLADRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT I E    ++ DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 477 FASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST +++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F   + + N    + AT  G +++ +L++ +Q  R+ K     A+KL ++D +L
Sbjct: 592 IIRVFVFDSLDINKN---FILATNDGYIKQLELTN-LQPTRTYKSRAMTAIKLKNKDSML 647

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              ++   T + +I L T     VR+ IS I   +G  +VGV+ ++L   D ++   +V
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPT-SGSKAVGVKSVNLKDDDYIVGYVLV 705


>gi|139473929|ref|YP_001128645.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes str.
           Manfredo]
 gi|209559259|ref|YP_002285731.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
 gi|134272176|emb|CAM30421.1| topoisomerase IV subunit A [Streptococcus pyogenes str. Manfredo]
 gi|209540460|gb|ACI61036.1| Topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
          Length = 819

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 619

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 620 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 678 KSAGVKGINLKNDDSLAS 695


>gi|88809359|ref|ZP_01124867.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
 gi|88786578|gb|EAR17737.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
          Length = 821

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 288/779 (36%), Positives = 429/779 (55%), Gaps = 77/779 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+++I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVREPDLSNDKLLKLIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E     K    R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R TSLQS F   M+AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L KA DR  V+ GL  A+ +L  V+ +I+ + +   AR  LM        
Sbjct: 363 LTLIRRTTHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL R+ +R E   L  + + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG----------------------L 524
              +L +R +LL  + +EL  +K    TPRRTR+VEG                       
Sbjct: 457 LKLLLDNRDQLLDALTKELRQLKKRFATPRRTRLVEGGDHLLAERAANQRPNAELQRRQA 516

Query: 525 LDM--EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
           LD    D   ++++D  V V     + R+ L+   A   G +     V+     V  L  
Sbjct: 517 LDALPPDSRILIQDDGQVKVISPQLMGRLHLNEPTAL--GDEPSPARVILPIKPVAKLLA 574

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+    V              W      P +  + L   L   QG+ + +++  P+ ++ 
Sbjct: 575 VTASGRVALIR----------WEFAGQQPGSLERFLPTAL---QGDPVVSVLQLPDADAD 621

Query: 643 WNNLYVV---FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            N   V      +  G  +R  + + + ++      +KL    E+ +   C +   + L 
Sbjct: 622 SNKAAVSSLGLLSSDGRFKRLPMQELLDLSGRAASVVKLKEGVELKTAVICREGGTLSLI 681

Query: 700 TKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + LG+ +  P++   +   G+ + G   + L  G+ +I  A V       D  + + +H
Sbjct: 682 SDLGRVLPLPVTEDNLPLMGKLAQGPVTMRLLPGETLI--AAVATDPEQQDPLLLFSRH 738


>gi|15674931|ref|NP_269105.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes M1 GAS]
 gi|20139229|sp|Q9L7Q4|PARC_STRP1 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|7532889|gb|AAF63267.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|13622074|gb|AAK33826.1| putative DNA topoisomerase IV (subunit C) [Streptococcus pyogenes
           M1 GAS]
          Length = 819

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 619

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 620 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 678 KSAGVKGINLKNDDSLAS 695


>gi|225870669|ref|YP_002746616.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
 gi|225700073|emb|CAW94138.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
          Length = 822

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/746 (36%), Positives = 420/746 (56%), Gaps = 61/746 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A
Sbjct: 7   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 67  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 127 SEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+  +V+R  + 
Sbjct: 187 SEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKSRVVVRSRTE 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G ++QI+VTE+PY+VNKA +++KI ++    ++ DIA++RDESDR G R+ IELK
Sbjct: 247 IEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDRTGLRIAIELK 306

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+++
Sbjct: 307 KDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRSQF 366

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDE++ +IR S N   A +E ++ S++            
Sbjct: 367 DKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADA-KENLKVSYD------------ 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E + L   I     I+   +
Sbjct: 414 -------------FSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGDEA 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +      ++++    I+ E+  V+V+  GY+KR   
Sbjct: 461 TMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSP 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F++LG V    V+ L       
Sbjct: 521 RSFHASSLEEIGK-----RDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYEL----TDL 571

Query: 614 RGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLSD 664
           R K +        GE ++  I  F  DE         S+     +  T+HG ++R +  +
Sbjct: 572 RWKDI--------GEHLSQAIANFAADELVIYAELIQSFEEGLYISVTQHGLIKRFERKE 623

Query: 665 FIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   ++S K A   D  D I+++     E D+LL T+ G  +RF    I +  G  
Sbjct: 624 LTPWRTYKSKSIKYAKLKDIDDRIVAIAPIIME-DLLLVTQQGYALRFSSQEIPI-QGLK 681

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA 746
           + GV+GI+L   D ++S A  ++AD+
Sbjct: 682 AAGVKGINLKAQDYLVS-ACPVNADS 706


>gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois]
 gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois]
          Length = 894

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 294/897 (32%), Positives = 486/897 (54%), Gaps = 80/897 (8%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           S+L Y+++VI  RA+PDL+DGLKPVHRRIL+   +  +  + ++ K A + G VMG YHP
Sbjct: 34  SFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSRFKKSATLVGAVMGSYHP 93

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ +IYDAL R++QD+ +R  L+EGQGNFGS+DGD PAA RYTE +L K     L  + 
Sbjct: 94  HGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRYTEIKLSKFGEKFLSGIK 153

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           ++ VDF  NYDGS QEP +L    P++L+NG  GIAVGMAT IP HNL EV D  +A+ID
Sbjct: 154 EECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKIPPHNLREVCDAIIALID 213

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP++  +  +E I+GPDFPTG  I+G   +K  ++ G G I++R    I+    ++ Q++
Sbjct: 214 NPELQDEQFIEYIKGPDFPTGGEIIGIESVKRYHSKGLGKIILRSKVEID---ANKHQLI 270

Query: 268 VTEIPYQVNKAAMLEKIAELVRE------KRIVDI-----ADLRDESD-RQGYRVVIELK 315
           + EIP+ + KA +++KIA+L  E      +R  +I      ++RDES+ ++G R++IE K
Sbjct: 271 IKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQRFLQNIRDESNLKEGIRLIIECK 330

Query: 316 RGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +G+       +LN LY+Y  LQ  F+VN+  L   KP+   +  I++ ++  + +++ R+
Sbjct: 331 KGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGKPQLLGIGAIIRNYLQHQLDMLQRK 390

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L + + R H+L G    V NLDEV+RII    NPE     ++Q  ++         
Sbjct: 391 TRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEV----IIQEKYS--------- 437

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+ VQ + I +L L +L  +    + NEL+    +  E   +L 
Sbjct: 438 ----------------LTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLD 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            +++    IK+EL+ +K+E     R  ++  +G+  +   DCI +ED+++ V+   Y+  
Sbjct: 482 DKNKQYENIKKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIPKEDIILKVTQNNYIAA 541

Query: 551 VPLSVYRAQRRGGKGR-SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +PL       R   G  S    +  D   DL + S+H  +  F++   V+K K   + I 
Sbjct: 542 IPLDKIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKIS 601

Query: 610 SPQARGK---ALINILSL-NQGERITTIMPFPEDESS----WNNLYVVFATKHGNVRRNK 661
           + +   K    L N++ L  + E+   I+    +E +    W ++ ++FATK G +R+  
Sbjct: 602 ANKKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKIS 661

Query: 662 LSDFI--QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              F   +  +SGK AM+L   D++  V    ++++ILL +   + +RF  S +     R
Sbjct: 662 FYKFFLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSILEAKRTR 721

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLKN 777
            + GVRGI+L   D  I   ++  A + YD         S + ++ S D+  +EI  +K 
Sbjct: 722 KTFGVRGINLRNDDGKIEGELI-SASSTYDGDQLLSLVESGKGKITSLDSIKQEIVKVK- 779

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR-SGKGIRATDVSKIN 836
                    EE  QE+   E+ I    +   G+    Y+ ++S +  GKG+ A   +K N
Sbjct: 780 ------EYDEETKQEV---EKIIKQDKKDEDGEL--EYEIKLSKKWGGKGVLAYK-NKEN 827

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVV 892
           E   L+A   + D+DQI+L+++   + R   ++I +  +R T+G  + S   +E++V
Sbjct: 828 E--KLIACVLIKDSDQILLMTNTDHINRFQASQISVRKTRRTEGSQLISLKPNEKLV 882


>gi|71910525|ref|YP_282075.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
 gi|161485747|ref|NP_664429.2| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS315]
 gi|73921619|sp|Q8K7U6|PARC_STRP3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|71853307|gb|AAZ51330.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 619

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 620 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 678 KSAGVKGINLKNDDSLAS 695


>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 273/756 (36%), Positives = 426/756 (56%), Gaps = 80/756 (10%)

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL +DTVDF PN+D S +EP +L AR P +L+NG  GIAVGMATNIP HN+GE+VD
Sbjct: 104 MLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNIGELVD 163

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--K 258
               +I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGRG I++RG + +E   
Sbjct: 164 VLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRTGRGRIIVRGKTEVELLD 223

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +   R  +++ EIPYQ NK++++EKIAELV  K +  I+D+RDESDR G R+VIELKRG+
Sbjct: 224 SKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRGS 283

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              ++LN+LYR T+LQS FS NM+ +   +P+   L  +L+AF+ FR  VV RR ++ L+
Sbjct: 284 DPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERRARFKLS 343

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +A++R H++ G+ + + NLD V+R+I+ +P+   A                         
Sbjct: 344 QAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMA------------------------- 378

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            + G      LSE Q  AIL++ L R+T L R+    E  SL  +I +  ++LSSR ++L
Sbjct: 379 -STGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQIL 437

Query: 499 GIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +I+QE + +K+   TPRR+ + +   G   +ED D I  E+M++ VS  GYVKR+  + 
Sbjct: 438 QLIEQEAIELKNRFSTPRRSMLEDTDSG--QLEDVDVIPNEEMLLAVSEKGYVKRMKPNT 495

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V+  + +++P  +  A G
Sbjct: 496 FNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAG 555

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             L+ IL L+ GERIT+I+P   F ED+      +++  T +G +++  L+ F  I  +G
Sbjct: 556 TPLVQILCLSDGERITSIIPVSEFAEDQ------FLLMLTMNGYIKKVSLNFFSSIRSTG 609

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA++L   DE+  V  CT ++ + + ++ G  +      IR   GRN+ G   + L +G
Sbjct: 610 IIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRAL-GRNTRGSIAMRLKQG 668

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D++ SM I+  A                              ++ D  +E  + + + + 
Sbjct: 669 DKMASMDIIPAA------------------------------IRKD--LEKALEDRQSRA 696

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVND-- 849
             L   ++L VSE G GKR     FR+S  +  G+     S  + + A+  V F + +  
Sbjct: 697 RNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSLTEDG 756

Query: 850 --NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             ++Q++LVS  GT+ R+ V +I I SR  +GV++ 
Sbjct: 757 ESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILM 792



 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ +L VSEKG+ KR     F + NR   G     V K+    A+      + +D ++  
Sbjct: 476 EEMLLAVSEKGYVKRMKPNTFNLQNR---GTIGKSVGKLRVNDAMSDFIVCHAHDYVLYF 532

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           SD+G +      +I   +R   G   V I   +  ER+ S+  + E
Sbjct: 533 SDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSE 578


>gi|94994200|ref|YP_602298.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
 gi|94547708|gb|ABF37754.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
          Length = 821

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 245 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 305 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 365 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 413 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 459 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 519 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 565 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 621

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 622 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 679

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 680 KSAGVKGINLKNDDSLAS 697


>gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA2]
 gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA3]
          Length = 844

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 281/748 (37%), Positives = 415/748 (55%), Gaps = 77/748 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  E   I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTVDDDFTEN--IIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P AA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGP-AAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +    R  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDE 530
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++            L++ D+
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            C       V +S  G + R+  +             G+    +    D+ I S  T+  
Sbjct: 512 PCW------VLLSATGLLARIDTA------------DGLPSDGDRATHDVIISSARTTAR 553

Query: 591 ----FFSSLG---FVYKEKVWRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDE 640
                 +S G    V+  ++  LPI +     A G  L +++ L +GER   +       
Sbjct: 554 GDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL---- 609

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
            S     +   T++G V+R        + +     + L + DE++ +VE   ++ ++   
Sbjct: 610 -SGAGPSLALGTRNGIVKRVNPE---LLGKESWEVIGLKNGDEVVGAVEMGDEDLELCFV 665

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           T+    + FP SA+R   GR+  GV GI
Sbjct: 666 TQGAALLHFPASAVRP-QGRSGGGVAGI 692


>gi|313885206|ref|ZP_07818958.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619897|gb|EFR31334.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 829

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/734 (36%), Positives = 418/734 (56%), Gaps = 47/734 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  ++ +D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +     +  Y K
Sbjct: 6   QNIEELTFSDILGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYEDRNTADNPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW  R  LI+  GN GS+DGDP AA RYTE 
Sbjct: 66  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKNRQPLIDMHGNNGSMDGDPAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL D+  DTVD+  N+D S +EP+VL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 126 RLSKIAMELLRDIHMDTVDYALNFDDSLEEPMVLPARFPNLLVNGATGISAGYATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  V ++ +    L  +M+ I+GPDFPTG ++ G  G+K  Y +G G IV+R  
Sbjct: 186 NLGEVIDAAVYMLSHDTYTLADIMKFIKGPDFPTGTILQGAKGLKAIYKSGHGKIVLRST 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           S IE   G + QIV+TE+PY+VNK+ ++++I ++  ++++  +AD+RDESDR G R+VIE
Sbjct: 246 STIESLKGGKSQIVITELPYEVNKSKLIQRIDDIRIQRKVEGMADVRDESDRNGTRLVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A A+ ILN L++ T LQ  +  NM+A+N  +P    LI +L+A++A ++EV++RRT
Sbjct: 306 IKREADAEQILNYLFKNTDLQINYHFNMIAINQRRPHEVGLIDMLEAYIAHQKEVILRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y LNK + R H++ GL   V+ LD+V+  IR S +   A+  L +    + D       
Sbjct: 366 QYSLNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKEFDFSLD------- 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                              Q  AI+ L+L RLT      ++NE   L   I    +ILS 
Sbjct: 419 -------------------QAEAIVSLQLYRLTNTDIVALQNERLELNERIGMYHNILSK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVKRV 551
              L   +  EL +VK    +PRRT+I   + ++  E  ++   E ++VTV+  GY+KR 
Sbjct: 460 DKSLKATLINELKAVKKAFPSPRRTQIEVEIEEINIEQSLLVNEEQVMVTVTKEGYIKRT 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  +        G     +R+ D+V     +ST+ +++  ++ G      V  LP    
Sbjct: 520 SLRSFATSDTMDLG-----VRELDYVIFAQELSTYQALVLITNKGQYIHLPVHELPDIRW 574

Query: 612 QARGKALINILSLNQGERITTIMPFPED-----ESSWNNLYVVFATKHGNVRRNKLSDFI 666
           +  G  L    +L  GE++  + P   D      + + + Y+V ATK G +++  L+DF+
Sbjct: 575 KDLGMHLSQQYNLTDGEQVVFVSPASRDINDQELAEYKDQYLVMATKEGMIKKTPLTDFV 634

Query: 667 QI----NRSGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGR 719
                 +R  + AMK+ +  DEI+ V    Q+    ++L T+    +R+P++ +  + G 
Sbjct: 635 SYRTYKSRPSQ-AMKMKTETDEIIGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSEY-GL 692

Query: 720 NSVGVRGISLAKGD 733
            + GV  I+L K D
Sbjct: 693 KAQGVTAINLKKDD 706



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 10/139 (7%)

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
           H+S Q  L  G  E++  +   S    +I+++   E K  +Q+++  +++G  K+T   D
Sbjct: 580 HLSQQYNLTDG--EQVVFV---SPASRDINDQELAEYK--DQYLVMATKEGMIKKTPLTD 632

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDND--QIILVSDKGTLIRVPVNEIRIAS 874
           F +S R+ K   +  +    E   ++ V  V  +   Q+IL+++K   +R P+ E+    
Sbjct: 633 F-VSYRTYKSRPSQAMKMKTETDEIIGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSEYG 691

Query: 875 RATKGVVIFSTAKDERVVS 893
              +GV   +  KD+ + +
Sbjct: 692 LKAQGVTAINLKKDDYLAA 710



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +EQ ++TV+++G+ KRTS   F  S+    G+R        E+  ++    ++    ++L
Sbjct: 503 EEQVMVTVTKEGYIKRTSLRSFATSDTMDLGVR--------ELDYVIFAQELSTYQALVL 554

Query: 856 VSDKGTLIRVPVNEI 870
           +++KG  I +PV+E+
Sbjct: 555 ITNKGQYIHLPVHEL 569


>gi|301598495|pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
 gi|301598496|pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
          Length = 508

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/526 (45%), Positives = 333/526 (63%), Gaps = 32/526 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+L+D             + E+Q +AIL+++L RL  L R  I +
Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRII 499


>gi|56807930|ref|ZP_00365752.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 759

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/737 (36%), Positives = 420/737 (56%), Gaps = 60/737 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  + 
Sbjct: 184 SEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IELK
Sbjct: 244 IEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K+
Sbjct: 304 KDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSKF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++NE N L   I     I+   +
Sbjct: 411 -------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEA 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR   
Sbjct: 458 TMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F++LG V    ++R PI     
Sbjct: 518 RSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI----- 562

Query: 614 RGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RNK 661
               L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R +
Sbjct: 563 --HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRKE 620

Query: 662 LSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G  
Sbjct: 621 LSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGLK 678

Query: 721 SVGVRGISLAKGDQVIS 737
           S GV+GI+L   D + S
Sbjct: 679 SAGVKGINLKNDDSLAS 695



 Score = 37.7 bits (86), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 33/222 (14%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPI----------------SAIRVFAGRNSVGVR 725
           DE++ V+       +LL T LG  +  PI                  I  FA    +   
Sbjct: 534 DELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYA 593

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I +   DQ + +A+  +      +R    K +S  R   S  T+ +  LK+D      +
Sbjct: 594 DI-VTSFDQGLYVAVTQNGFIKRFDR----KELSPWRTYKSKSTKYV-KLKDDKDRVVTL 647

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S    ++L       L V++ G+  R SS +  I      G++  ++   +   +L + F
Sbjct: 648 SPVIMEDL-------LLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDD---SLASAF 697

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            V  N   +L + +G+L R+ V++I   SRA +G+++    K
Sbjct: 698 AVTSNSFFVL-TQRGSLKRMAVDDIPQTSRANRGLLVLRELK 738


>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
 gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
          Length = 819

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/719 (37%), Positives = 415/719 (57%), Gaps = 44/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIKVRAKTTIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ L+KA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKRTKFDLDKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ + +N                          +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK-YNK------------------------FTE 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R+ L   I +EL +VK E
Sbjct: 418 KQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKE 477

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT+I E    +E DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 478 FANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 534 -LPDGDKVVYKNTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQ 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDE-I 684
           I  +  F +  +  N    + AT  G +++ +L++ +Q  R+ K     A+KL  +D  +
Sbjct: 593 IIRVFVFDKLNTDCN---FILATNDGYIKQLELAN-LQPTRTYKSRAMTAIKLKGKDSYV 648

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + V+    +N  +I L T     +R+ +S I   +G  +VGV+  +L   D +++  +V
Sbjct: 649 VGVDLIKSDNHKEITLFTHRAYAIRYDVSEIPT-SGAKAVGVKSANLKDDDYIVNYVLV 706


>gi|94988399|ref|YP_596500.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992281|ref|YP_600380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
 gi|94541907|gb|ABF31956.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545789|gb|ABF35836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
          Length = 821

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEVR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 245 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 305 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 365 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 413 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 459 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 519 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 565 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 621

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 622 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 679

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 680 KSAGVKGINLKNDDSLAS 697


>gi|19745974|ref|NP_607110.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS8232]
 gi|73921621|sp|Q8P1B3|PARC_STRP8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|19748135|gb|AAL97609.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes MGAS8232]
          Length = 819

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 619

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 620 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 678 KSAGVKGINLKNDDSLAS 695


>gi|194476877|ref|YP_002049056.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
 gi|171191884|gb|ACB42846.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
          Length = 818

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 269/747 (36%), Positives = 420/747 (56%), Gaps = 51/747 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I S+++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++ +  N  Y 
Sbjct: 3   EERIQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELDLTPNHAYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+AQ+++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLAQNFANRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A+  LL ++G  TV+F PN+D S  EP+VL A+ P +L+NG  GIAVGMAT++P
Sbjct: 123 IRLALIASDGLLSEIGSSTVEFTPNFDNSQHEPIVLPAQLPFLLLNGCSGIAVGMATSVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+V+  +A+I  P++    L+++I GPDFPTG  +L   GI+  Y  GRGSI +R
Sbjct: 183 PHNLGEIVNALIAIIQKPNLSDKTLLDLIPGPDFPTGGEVLINKGIQETYLEGRGSITMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE     K    R  +V+TE+PYQ+NKA  +EK+AE V   +I+ I+D+RDESDR 
Sbjct: 243 GVAHIEEVRLSKGRHRRFAVVITELPYQLNKAGWIEKLAEKVNYGKIIGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++    + +L+ L R TS ++ FS  ++AL   +P +  L  +L+ F+++RE
Sbjct: 303 GTRLVVELRKDTEPEKVLSILERRTSFKTNFSSIILALVDGQPVQLNLRQLLEHFLSYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT+Y L +  +R  V+ GL  A+ +L  +V II+                     
Sbjct: 363 ITIIRRTQYTLKRKENRLEVVEGLLRALFSLTRIVEIIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                 L + S+  +       LS++Q+ AIL + L RLT   ++++  E NSL ++ K+
Sbjct: 402 -----ALTESSNAKLNLRVHFDLSDIQSDAILNMPLRRLTSFEKENLHIEANSLRLDRKK 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV------ 540
             ++L  R  LL  I  EL ++K    TPRRTR+ E   ++ +    V +   +      
Sbjct: 457 LNNLLKKREALLSTIMNELKNLKKRFATPRRTRLREESFNLLNSSANVSQQEQILENLPK 516

Query: 541 ----TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
                +SH G V+ +   +           SG           L  +S H S+L FSS G
Sbjct: 517 TNQLIISHDGQVQIIAPQLINHLHLEATLTSGHHPSPPQL---LLPISQHPSILIFSSSG 573

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV-FATKHG 655
            V   + W      P+   + L N L    G+++  I+P   + +   ++  +   +  G
Sbjct: 574 RVGLLR-WEFAEQQPRNISEFLPNSL---LGDQVIQILPLNLEANLIPSVSSIGLLSSDG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-IR 714
           + +R  + +F  ++      ++L     +L V  C +  ++++ + LG+ ++  I   I 
Sbjct: 630 HFKRLPIEEFHDLSGRAVTILRLKEGVSLLRVVECFENEELIIGSSLGRLLKIRIQTNIL 689

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIV 741
               R + G   + L  G+ VI    +
Sbjct: 690 PMMKRTAQGTLLLKLLPGETVIGATCI 716


>gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201]
 gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 851

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 285/758 (37%), Positives = 404/758 (53%), Gaps = 79/758 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +T EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M QMG+  ++ +VK A
Sbjct: 23  IVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQMGLRPDRGHVKSA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+AAIYDA+ RMAQ +++R+ L++G GNFGS+D D PAA RYTE R+
Sbjct: 83  RVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-DGPAAPRYTEARM 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L  DL +D VDF PNYD  FQ+P VL A YPN+LVNG  GIAVGMATN+  HN+
Sbjct: 142 APAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIAVGMATNMAPHNM 201

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV  G   ++ NP+  L+ LM++I GPD P+G  I+G  GI++AY TGRGS   R    
Sbjct: 202 REVAAGARHLVLNPEATLEELMKLIPGPDLPSGGRIVGLEGIRDAYRTGRGSFRTRATVS 261

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           +E+ S  ++ IVVTE+PY V    + EKI + V+ K++  I+D+ D +DR  G R+VIE+
Sbjct: 262 VEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDLTDRTNGLRLVIEV 321

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G +   +L QLYR+T L+  F +N VAL   +P    L+ +L+ +   R  VV RRT 
Sbjct: 322 KNGFNPQAVLAQLYRHTPLEESFGINNVALVDGQPRTMGLLELLRVYTDHRIAVVRRRTA 381

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV++IIR S     AR               LI + 
Sbjct: 382 FRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDR-------------LIAVF 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             LS  Q   ILELRL +LT   R ++  E + L  EI E   IL S 
Sbjct: 429 D-------------LSRAQAEHILELRLRQLTKFSRIELEAERDQLQKEIAELEAILGSE 475

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--------------------LLDMEDEDCIV 534
           + L G++  EL     +    RRT ++E                      L++ D+ C V
Sbjct: 476 TTLRGVVADELSETAQKFGDERRTVLLEAEDLPAVTAAQTGGKKAATSVALEISDDPCWV 535

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                     L    R+  S  R     G  R        D +T +   +    +   +S
Sbjct: 536 ---------FLSTTGRIARSATRRPLADGSRRF-----KHDALTSVVPATARGEIAAVTS 581

Query: 595 LGFVYKEKVWRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +     +P+     G P+ A G    + L L + E +  + P  E         V
Sbjct: 582 TGRMLRVSCVDIPVLQDFDGVPRLADGVPAADFLGLEKNEALVGLAPLSE--------VV 633

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T  G V+R  ++    +N     A+KL   D ++ V       ++++ +   + + F
Sbjct: 634 AIGTAAGVVKR--VNPDYPLNLDQWPAIKLKDGDRVVGVSAAPDGTELVMVSSDAKLLHF 691

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           P SA+R   GR + GV G+ LA G+ VI  A V+  D+
Sbjct: 692 PASAVRP-QGRTAGGVAGMKLAAGEHVIFCAAVVPQDS 728


>gi|228478260|ref|ZP_04062868.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
 gi|228249939|gb|EEK09209.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
          Length = 818

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 274/744 (36%), Positives = 419/744 (56%), Gaps = 51/744 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+  +TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDNNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE   L  +I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR  
Sbjct: 457 RTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFSSLGFVYKEKVWRLPIG 609
              + A      G+     RD+D   DL +V    T   +L F++   V    +  LP  
Sbjct: 517 PRSFNASTIDEVGK-----RDDD---DLILVQQAKTTQHLLIFTNQANVIYRPIHELPDI 568

Query: 610 SPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   I +L++ E +     + E    +     + ATK G ++R +  +F   
Sbjct: 569 RWKDLGEHLSQTITNLSKDEEVL----YAEILDDFETGTYLAATKLGQIKRFERKEFTPW 624

Query: 669 ----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               ++S K A   D  D I++V T  Q +DI++ T+ G  +RF    + V  G  + GV
Sbjct: 625 RTYKSKSVKYAKLKDDSDFIVTV-TPIQLDDIMIITQKGYALRFNADEVPV-VGAKAAGV 682

Query: 725 RGISLAKGDQVISMAIVLHADADY 748
           + I+L K D  +    V +  + Y
Sbjct: 683 KTINL-KDDDTVQAVFVANTQSFY 705


>gi|239626402|ref|ZP_04669433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516548|gb|EEQ56414.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 744

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 277/762 (36%), Positives = 432/762 (56%), Gaps = 45/762 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K A
Sbjct: 5   IIRTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLDHDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q++   + L++G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQEFKKGMALVDGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAQEVYLKDLDK-TVNFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD   A ID+PDI  + LME + GPDFPTG +I  ++ +   Y TG G I +RG  
Sbjct: 184 LGEVVDAVRAYIDDPDISTEQLMEYMPGPDFPTGGIIANKSELPVIYETGAGKIKLRGKF 243

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  K   D++++V+TEIPY +  A +   L  IA+LV  K++ D+ D+ ++S+++G R
Sbjct: 244 EVELGKRKADKDKLVITEIPYTMIGAGINKFLVDIADLVESKKLTDVVDISNQSNKEGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL++ A  + I N LY+ T  +  F VNM+A+ G +PE  +L GIL+ F+ F+ E  
Sbjct: 304 IVLELRKDADIEKIKNILYKKTKFEDTFGVNMLAIAGGRPETLSLKGILRNFLDFQYENT 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+   LL K  D+  V  GL  A   +D ++ I+R S N + A+  L   + + S+I+ 
Sbjct: 364 ERKYNVLLQKEMDKKEVQEGLITACDCIDLIIAILRGSKNLKDAKACLT--NGDVSNIRF 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL- 488
            +   ++ +        ++ +E Q  AILE+RL +L GL       E+ +L  E KE L 
Sbjct: 422 KVQGFEEDA------KKLHFTERQASAILEMRLYKLIGL-------EILALEKEHKETLR 468

Query: 489 ------DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
                  IL SR  +  +IK +L ++K+E   PRRT I +G   + DE  +  +++V  +
Sbjct: 469 KIAGYKKILGSRGEMNRVIKDDLAAIKEEFSVPRRTLIEDGPEAVYDESAVQVQEVVFVL 528

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
              GY K +  S Y   +            D + V  +  ++T    LF +S G +Y+ K
Sbjct: 529 DRFGYCKLLDKSTYERNQE---------TVDTEQVHVVRCLNTDKICLFAAS-GNLYQIK 578

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  +P G  + +G  + N+   +  +     +   +D        +VFATK   V++   
Sbjct: 579 VMDVPAGKLRDKGVPIENLSKYDGAKDSIVYLTCAQD---LKGATLVFATKMAMVKQVPA 635

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F + N     A KL   D+++S+     + +++L T  G  +RFP+  I V   + S 
Sbjct: 636 EEF-ETNNRMVAATKLQEGDQVISILPVEGQEEVVLQTTSGVFLRFPLEEISVLK-KASR 693

Query: 723 GVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRR 763
           GVRGI LAK +++  + ++      DY  +  +M  +   +R
Sbjct: 694 GVRGIKLAKNEELEKLYLIGDNPVIDYKGKEVHMNRLKLAKR 735



 Score = 44.3 bits (103), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           LK   ++  ++    K+  + +F  +NR          +K+ E   ++++ PV   ++++
Sbjct: 616 LKGATLVFATKMAMVKQVPAEEFETNNR------MVAATKLQEGDQVISILPVEGQEEVV 669

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           L +  G  +R P+ EI +  +A++GV     AK+E +  +  I ++ ++D
Sbjct: 670 LQTTSGVFLRFPLEEISVLKKASRGVRGIKLAKNEELEKLYLIGDNPVID 719


>gi|87301556|ref|ZP_01084396.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
 gi|87283773|gb|EAQ75727.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
          Length = 820

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 279/749 (37%), Positives = 418/749 (55%), Gaps = 54/749 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLDEIGSDTVDFTSNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+  +A+I  P++  + L+E++ GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVEALIALIRKPELSDEKLLELVPGPDFPTGGEVLVGSGVRDTYLQGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE     K    R  +V+TE+PYQ++KA  +EK+A+ V + +I  IAD+RDESDR+
Sbjct: 243 GIAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLADQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIEL+R   A  +L  L R TSLQS F   ++AL   +P++ +L  +L  F+ +RE
Sbjct: 303 GMRVVIELRRDTEASKVLTDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLNHFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L +  DR  V+ GL  A+  L EV+              E +Q + +A+ 
Sbjct: 363 HTLIRRTSHALRRTEDRLEVVEGLIRALDALPEVI--------------ERIQAASDAAS 408

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            +  + +  D            LSE Q  A+L + L RLT L +D +R E   L  E + 
Sbjct: 409 ARASLQVHFD------------LSERQADAVLAMPLRRLTSLEQDGLRKESVELMEERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDM 538
              +L  R+ LL  +  EL ++K    TPRRTR+V G  D+  +          + R+  
Sbjct: 457 LRHLLDDRAALLESMVAELKALKKRYSTPRRTRLVAGGDDLVAQRAAAVRPNTELQRQQA 516

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGR-----SGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           +  +   G +      V R       GR     +  +         +  V+   S+L FS
Sbjct: 517 LEALPGDGRLLIQADGVVRIVSPQALGRLHLDEAAPLGEHPSPARLILPVAEKPSLLAFS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V   + W      P +  K L   L    G+ I  ++P P+  +    L     + 
Sbjct: 577 ASGRVAMLR-WEFAAQQPGSLEKFLPEGLL---GDPIVEVLPLPQKPTGTLGLL----SS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  +  F +++      +KL    ++  V  CT   D+++ +  G+ +R  ++  
Sbjct: 629 DGRFKRLPIEAFSELSGRAATVLKLKDGVQLRRVVPCTDGQDLVVASTTGRLLRLAVNDD 688

Query: 714 RV-FAGRNSVGVRGISLAKGDQVISMAIV 741
            +   G+ + G   + L  G+ V+  A V
Sbjct: 689 TLPLMGKAAQGPMLLRLLPGESVVGAACV 717


>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
          Length = 819

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/719 (37%), Positives = 415/719 (57%), Gaps = 44/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQVRAKTTIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ L+KA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKRTKFDLDKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ + +N                          +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK-YNK------------------------FTE 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R+ L   I +EL +VK E
Sbjct: 418 KQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKE 477

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT+I E    +E DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 478 FANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 534 -LPDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQ 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDE-I 684
           I  +  F +  +  N    + AT  G +++ +L++ +Q  R+ K     A+KL  +D  +
Sbjct: 593 IIRVFVFDKLNTDCN---FILATNDGYIKQLELAN-LQPTRTYKSRAMTAIKLKGKDSYV 648

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + V+    +N  +I L T     +R+ +S I   +G  +VGV+  +L   D +++  +V
Sbjct: 649 VGVDLIKSDNHKEITLFTHRAYAIRYDVSEIPT-SGAKAVGVKSANLKDDDYIVNYVLV 706


>gi|116511813|ref|YP_809029.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107467|gb|ABJ72607.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 824

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 267/740 (36%), Positives = 426/740 (57%), Gaps = 43/740 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 3   NIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R   
Sbjct: 183 LGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IEL
Sbjct: 243 DIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+++R++
Sbjct: 303 KKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIIKRSQ 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA  R H++ GL   V+ LDEVV  IR S               N +D K+ I + 
Sbjct: 363 FDLNKAEKRLHIVEGLIRMVSILDEVVATIRASE--------------NKADAKENIKV- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++  
Sbjct: 408 -----------SFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIINDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++K+EL  VK +   PRR+ + + +  +++E  + IV ED VV+V+  GY+KR  
Sbjct: 457 RTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + +      G+     RD+D +       T   +L F++LG V    +  L     +
Sbjct: 517 PRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDVRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L   LS  +  E++  +     D  +  NL VV  T++G ++   R   S +   
Sbjct: 572 DIGEHLSQSLSNFSSDEKVIYVQIV--DAFAGENLVVV--TRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + +  Q  D+++ ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGNDDEIVLISPVQFTDLMIISENGYALRFNLDDVPVLGAR-AAGVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADY 748
           L K D  I  A  +++++ Y
Sbjct: 687 L-KNDDKIKAAFFVNSNSWY 705


>gi|28896140|ref|NP_802490.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes SSI-1]
 gi|28811390|dbj|BAC64323.1| putative DNA topoisomerase IV, subunit C [Streptococcus pyogenes
           SSI-1]
          Length = 821

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/738 (36%), Positives = 419/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 245 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 305 KKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 365 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAK-ENLKVSYD----------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 413 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 459 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 519 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 565 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 621

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 622 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 679

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 680 KSAGVKGINLKNDDSLAS 697


>gi|71903357|ref|YP_280160.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
 gi|71802452|gb|AAX71805.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
          Length = 821

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 269/738 (36%), Positives = 421/738 (57%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 5   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 125 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 185 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 245 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 305 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N +T  +E ++ S++           
Sbjct: 365 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDN-KTDAKENLKVSYD----------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 413 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 459 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 519 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 564

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RN 660
                L ++   + GE ++ TI  F  +E        +S++    V  T++G ++   R 
Sbjct: 565 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRK 621

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LS +          +KL D +D ++++     E D+LL TK G  +RF    + +  G 
Sbjct: 622 ELSPWRTYKSKSTKYVKLKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGL 679

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D + S
Sbjct: 680 KSAGVKGINLKNDDSLAS 697


>gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
 gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
          Length = 970

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 318/948 (33%), Positives = 497/948 (52%), Gaps = 102/948 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I   SI++ M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G  ++    +K Y
Sbjct: 10  KDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGSIDGDNAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  GIAVG+ATNIP
Sbjct: 130 EARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGLATNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D  VA IDN DI    LM  I+GPD PTG +I+G   + +AY  G G + +R
Sbjct: 190 PHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIIIGEQALLSAYEKGEGRVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK   DR  I++ E PY+ NK+ +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 250 AKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRDESDRNG 309

Query: 308 YRVVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ AS +V   +L  L++ T LQ   S NMVA+   KPE   L  ILK +V  
Sbjct: 310 IRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIADGKPETLGLKAILKYYVEH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EVV+RR++  L  A+ R H++ G   A+  +D+++  IR S + + + + L+ +    
Sbjct: 370 QKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSKKDSEQNLVNK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    S  Q +AI+EL L +LTGL       E  +L  EI
Sbjct: 426 ----------------------FGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKEI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    ILSS   L  ++K+EL  VK++   PRRT IV    +  +D+  E+ I+ ED+V+
Sbjct: 464 KALEKILSSEKELFKVVKKELEEVKEKYGDPRRTEIVHDDEQAKIDI--EELILDEDIVI 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GY+KRV    Y   RR       +  R+ DF T L   +T  +++ F+  G +Y+
Sbjct: 522 TLSNEGYIKRVADKYY---RRINPKVEDIEYREGDFNTYLLNGNTKDNMMIFTDEGNLYQ 578

Query: 601 EKVWRLPIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            ++  +P    + +G+    LI  L + + E+I  I    E   S +    +F T  G +
Sbjct: 579 IRISNIPEMKWKEKGERLDTLIKALDI-EKEKIIDIYITSELLPSKS---FMFFTNRGVI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIR 714
           +++ L  F + N S  +A+KL   ++++ ++    E+    I + TK G      I  I 
Sbjct: 635 KKSSLDKF-KTNYSKLLALKLKDNEKLIDIKLVNTEHIEKYISVITKNGLSFTVDIPRIE 693

Query: 715 VFAGRNSVGVRGISLAKGDQVISMA---------IVLHADADYDERI-----------CY 754
             + RN +G +  +++  D+V S+           V++ + + + +I           CY
Sbjct: 694 D-SERNIMGTQIFNISDNDEVKSIKYIDKFDMKNFVVNINKNGNIKISNRINHKNFYGCY 752

Query: 755 MKHMSAQRRLISGDTEEITSLK----NDSSVEGNISEERCQELKLKEQFILTV------- 803
              +S  R +I G+   +  +      +   +G    +   + K KE+ I+ +       
Sbjct: 753 ANSLS--RLIIFGEKGNVYYIPAYMIQNIDSKGIKLNDLIDDFKEKEENIVNIYSISEFS 810

Query: 804 --------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--I 853
                   ++ G+ KRT+  +F   N   KG +        E   ++ V   N++D+  I
Sbjct: 811 DSTSVYFFTKSGYVKRTNLQEFNAENPCIKGYKLK-----KEQDKIINVLLFNNDDKKDI 865

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IL++     IR   N I    +   GV   S   ++ V+  + I + E
Sbjct: 866 ILITKNAMGIRFEANSISYMGKIASGVTGISLRDNDEVIFAQFIDKKE 913


>gi|226323236|ref|ZP_03798754.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
 gi|225208426|gb|EEG90780.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
          Length = 746

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/728 (35%), Positives = 411/728 (56%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   EESQIIRTEYSELMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD +DF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKDIIDFVPNFDETEKEPAVLPVRIPNLLLNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE+VD   A + N DI    LM+ I+GPDFPTG +++ +  +   Y TG G I I
Sbjct: 182 PTHNLGEIVDAVKAYMKNNDITTKQLMKYIKGPDFPTGGIVVNKDDLAEIYETGTGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G R++IV++EIPY +  A +   L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVDVEEIKGGRKKIVISEIPYTMIGAGIGKFLNDVCNLVETKKTSDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A  D ++N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIEVKRDADVDNLINMLYKKTRLEDTFGVNMLAVADGRPEVLGLKRIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K +D+  +  GL  A   +D ++ I+R S +   A+  L   +      
Sbjct: 362 LATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSSSIRDAKECLTTGATEKIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K        S  +      +  ++ Q +AILE+RL +L GL  + +  E  +    I + 
Sbjct: 422 K--------SKRSEKMASMLRFTDRQAQAILEMRLYKLIGLEIEALMKEHETTLANIAKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  +L ++K E    R+T+I      + +E+ +  +++V+ +   GY
Sbjct: 474 EDILNNYDSMAQVIIDDLDALKKEYAVKRKTKIENAEEAVFEENKVQEQEVVLLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  SVY   R      +  ++R                +  F+S G +++ KV  LP
Sbjct: 534 AKTVDGSVYERNREAADKENKYILR----------CMNTGKLCLFTSDGKMHQIKVMDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  +    I+   +D   + + + +F TK G +++   S+F Q
Sbjct: 584 YGKFRDKGFPIDNVSNFDSTKE--EIVYLCDDRELFFSKF-LFVTKQGMIKKVAGSEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   D ++S+       D++L T+ G  +RFP   +     + +VGVRG+
Sbjct: 640 VTKRTIAATKLQDEDALVSIRPIRDVQDVVLMTENGFVLRFPAEEVSE-KKKGAVGVRGM 698

Query: 728 SLAKGDQV 735
            L K D V
Sbjct: 699 KLQKNDSV 706



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 58/108 (53%), Gaps = 9/108 (8%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C + +L     L V+++G  K+ +  +F+++ R+   I AT   K+ +  ALV++ P+ D
Sbjct: 611 CDDRELFFSKFLFVTKQGMIKKVAGSEFQVTKRT---IAAT---KLQDEDALVSIRPIRD 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              ++L+++ G ++R P  E+   S   KG V     K ++  SVE +
Sbjct: 665 VQDVVLMTENGFVLRFPAEEV---SEKKKGAVGVRGMKLQKNDSVEEV 709


>gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
 gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
          Length = 831

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 283/764 (37%), Positives = 413/764 (54%), Gaps = 66/764 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        EE  + I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 4   MARTTSPPPEELTEKIIDVDVSEEMRGSFLEYAYSVIYQRALPDARDGLKPVQRRILYQM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VKCAR+ GEVMGK HPHG++AIYDAL R++Q +++R+ L++G GNFGS+
Sbjct: 64  SEMGLRPDRGHVKCARVVGEVMGKLHPHGDSAIYDALVRLSQPFAMRVPLVDGHGNFGSL 123

Query: 121 DGD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            GD  PAA RYTE RL +AA  +++ + ++ VDFRPNYDG   EP VL A +PN+LVNG 
Sbjct: 124 GGDDAPAAMRYTEARLTRAAMLMVESIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGA 183

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNLGEV+     ++ +PD  L+ LME I GPD PTG  I G  GI++
Sbjct: 184 SGIAVGMATNMAPHNLGEVIAAARHLLAHPDATLEELMEFIPGPDLPTGGTITGLDGIRD 243

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRG+  IR    IEK +  R  +VVTE+PY V    ++ +I ELV+ K++  I+DL
Sbjct: 244 AYTKGRGTFRIRATVSIEKLTPRRTGLVVTELPYNVGPEKVISRIKELVQAKKLQGISDL 303

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D +DR QG R+VIELK G + + +L +LYR T ++  F +N VAL   +P    L  +L
Sbjct: 304 KDLTDRNQGLRLVIELKNGFNPEAVLEELYRLTPMEETFGINNVALVDGEPRTLGLRDLL 363

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R EVV RR ++   K  +R H++ GL +A+A++D+V+ +IR S +   AR+ LM
Sbjct: 364 QVYVDHRLEVVRRRCEHRRAKREERLHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLM 423

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  LS+ Q R IL+  L RLT   + ++  E +
Sbjct: 424 D--------------------------TFDLSDTQARYILDTPLRRLTRYDKQELEQERD 457

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------LDMED 529
           +L  EI E   IL S  +L  ++ +EL +V  E  TPRRT + E           L++ D
Sbjct: 458 TLTAEIAELTAILESDKKLRRLVSKELAAVAKEFATPRRTVLRESTGEVRTSAMPLEVGD 517

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           + C       V +S  G + R           G + R+       D +      +    V
Sbjct: 518 DPCH------VLLSTSGLIGRTSGQQLPPMFEGPRTRN-------DAMASNVRATVRGEV 564

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQA-------RGKALINILSLNQGERITTIMPFPEDESS 642
              + LG V +  V  LP    +A        G  +   + L+  ER+  +     D   
Sbjct: 565 GLVTDLGRVIRVPVLELPELPDKADENPAISSGVPVTEFVELDADERVIALTSLDSDGPG 624

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTK 701
                +V  T+ G V+R    D+ Q     +I + L   D ++ +    T E D++  T 
Sbjct: 625 -----LVVGTRSGIVKRVG-GDYPQQKDDFEI-IALRPGDRLVGATPLVTGEEDLVFITS 677

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             Q +RF  + +R   GR + GV GI LA+G   +    VL  +
Sbjct: 678 NAQLLRFSATTVRP-QGRGAGGVTGIRLAEGAHAVWFGAVLSPE 720


>gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622]
 gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622]
          Length = 813

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 286/765 (37%), Positives = 420/765 (54%), Gaps = 58/765 (7%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARIS 78
           S+ DE +  Y+ YA++VI  RA+PD+RDGLKPV RRILFGM     +    KY K A++ 
Sbjct: 59  SLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAKVV 118

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG+YHPHG+A+IY+AL RMAQD+SLR  L++G GNFGS+DGD  AA RYTECRL   
Sbjct: 119 GSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRLAML 178

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL +LGK TV FRP YDG+ QEPVV+ AR P +L+NG  GIAVGMATNIP H+LGE+
Sbjct: 179 SSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLGEL 238

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIE 257
           VD  VA+I+NP +    L++ ++GPDFPTG  IL  +  +++ Y +G+GSI IRG   +E
Sbjct: 239 VDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYKLE 298

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 +QIV+T IPY VNK+ ++ K  +LVRE+++  I D+RDES +   R+V+ELK+ 
Sbjct: 299 DLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD-VRIVLELKKD 357

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYK-------PERFTLIGILKAFVAFREEVVV 370
           A+ ++++  LY+ T LQ+ F VN+  L   K       PER  L  IL  F+ FR +VV 
Sbjct: 358 ANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFDVVT 417

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R ++ L +   R H+L G       LDE+++IIR S   + A R+L+ R          
Sbjct: 418 KRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIAR---------- 467

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L E Q  AILE++L +L  L    +  EL     EIK    I
Sbjct: 468 ----------------FKLDEAQVDAILEMKLYKLARLEILVVEKELKEKRAEIKRIQGI 511

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDME--DEDCIVREDMVVTVSHLGY 547
           L  ++++ G ++ EL  +K   +  RRTRI   G  +ME   E  I  ED  V ++  G+
Sbjct: 512 LKDKNKVWGTVRDELGEMKARYNDKRRTRIGGAGSEEMEFSAEAFIADEDAHVVITRDGW 571

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKRV         R  K  S   +R+ D V  +   S   +++ FS+ G  Y  +   +P
Sbjct: 572 VKRV---------REVKDPSTTRLREGDAVMAVLAGSLKANLVLFSNFGTAYVTRFNDVP 622

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +    G+ +      + GER+ + +    D        +V  TK G   R  L   ++
Sbjct: 623 AST--GYGEPVQKFFKFDDGERVVSALSL--DARLPRPQKLVGVTKQGMGMRFLLEPHLE 678

Query: 668 IN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++ R+G+   K    DEI+ V+  T  + + + T+    +   ++ +   AG    GV  
Sbjct: 679 VSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELAGPGK-GVTV 737

Query: 727 ISLAKGDQVISMAIVLHADAD----YDERICYMKHMSAQRRLISG 767
           I +  GD+V+    V  A  D    ++ +     H+S  +  ++G
Sbjct: 738 IKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTG 782


>gi|195978265|ref|YP_002123509.1| DNA topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974970|gb|ACG62496.1| topoisomerase IV subunit A ParC [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 819

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/746 (36%), Positives = 418/746 (56%), Gaps = 61/746 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+G +V+R  + 
Sbjct: 184 SEVINAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G ++QI+VTE+PY+VNKA +++KI ++    R+  IA++RDESDR G R+ IELK
Sbjct: 244 IEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNRVPGIAEVRDESDRTGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+++
Sbjct: 304 KDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRSQF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDE++ +IR S N   A+  L                  
Sbjct: 364 DKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL------------------ 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             SY          SE Q  AI+ L+L RLT      ++ E + L   I     I+ + +
Sbjct: 406 KVSYD--------FSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGNEA 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +      ++++    I+ E+  V+V+  GY+KR   
Sbjct: 458 TMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F++LG V    V+ L       
Sbjct: 518 RSFHASSLEEIGK-----RDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYEL----TDL 568

Query: 614 RGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLSD 664
           R K +        GE ++  I  F  DE         S+        T+HG ++R +  +
Sbjct: 569 RWKDI--------GEHLSQAITNFAADEMVIYAELIQSFEQGLYASVTQHGLIKRFERKE 620

Query: 665 FIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +      ++S K A    + D I+++     E D+LL T+ G  +RF    I +  G  
Sbjct: 621 MMPWRSYKSKSIKYAKLKAADDRIIAIAPIVME-DLLLVTQQGYALRFSSQEIPI-QGLK 678

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA 746
           + GV+GI+L   D ++S A  ++AD+
Sbjct: 679 AAGVKGINLKAQDYLVS-ACPVNADS 703


>gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str.
           Langeland]
 gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra]
 gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           B1 str. Okra]
 gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. 230613]
          Length = 956

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 300/898 (33%), Positives = 475/898 (52%), Gaps = 73/898 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ+++ R+ LI+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ DV+   L  LY+ T LQS  S NMVAL   KP+   L  +LK +V  
Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++    
Sbjct: 369 QKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTV 542
            +   IL S   LL +IK+EL+ VK+  +  R+T I+E      ++ E+ IV ED+V+T+
Sbjct: 463 NKLTKILKSEKELLKVIKKELIEVKETYNDKRKTSIIEDDEKAKIDVEEIIVEEDVVLTL 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ G+ KR+ L  Y    R       +  R+ DF   +   +T  ++   +  G +Y+ K
Sbjct: 523 SNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQIK 579

Query: 603 VWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V  +P    + +G  L  I+ +++  E I       ED ++  ++  +F T  G +++  
Sbjct: 580 VINIPEFKWKEKGVKLDEIIKTIDLSETIMEAFSI-EDFTAQKDM--LFITDSGYIKKTT 636

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++     
Sbjct: 637 LDKF-NTNYTKIMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEP-VD 694

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSLK 776
           RN +G +   +   D   S+  V   D +Y+ +  Y+         IS   D +   SL 
Sbjct: 695 RNIIGYKLFDILPND---SIEKVDFCD-NYEYKSFYVNISKEGLITISDLKDNKSHISLF 750

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            DSS                 + ++   ++G      ++  +     G  I A    KI+
Sbjct: 751 TDSS-----------------KILVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKIS 793

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + A ++ F   ++  I   S+KG + R  ++E++I   +T+  V     K++++VS+
Sbjct: 794 LLNA-ISTFRFEEDISIYFSSEKGLIKRTLLSELKIEGNSTQ--VYKFKHKEDKLVSI 848



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 20/181 (11%)

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKE---KVWRLPIGSPQARGKALINILSLNQGERIT-- 631
           ++DL    +H S+   SS   V  +   K + +P    Q+  +  INI +   G++I+  
Sbjct: 737 ISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAFMLQSIKEEGINISAFT-GDKISLL 795

Query: 632 ---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG--KIAMKLDSRDEIL 685
              +   F ED S      + F+++ G ++R  LS+  I+ N +   K   K D    IL
Sbjct: 796 NAISTFRFEEDIS------IYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSIL 849

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             E   Q+N IL+ T+    +RF   A+    G+ + GV GISL   D+VI  +I+   D
Sbjct: 850 IKEHGEQKN-ILIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILASIIDEND 907

Query: 746 A 746
            
Sbjct: 908 T 908


>gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657]
 gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 956

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 306/906 (33%), Positives = 479/906 (52%), Gaps = 76/906 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP +L A++PN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ D++   L  LY+ T LQS  S NMVAL   KP+   L  +LK +V  
Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++    
Sbjct: 369 QKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTV 542
            +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T+
Sbjct: 463 NKLTKILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEEIIVEEDVVLTL 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ K
Sbjct: 523 SNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQIK 579

Query: 603 VWRLPIGSPQARGKALINIL-SLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRN 660
           V  +P    + +G  L  I+ +++  E  T I  F  ED ++  ++  +F T  G +++ 
Sbjct: 580 VINIPEFKWKEKGVKLDEIIKTIDLSE--TIIEAFSIEDFTAQKDM--LFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQKGLSFNIEEPSLEP-V 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSL 775
            RN +G +   +   D   S+  V   D +Y+ +  Y+         IS   D +   SL
Sbjct: 694 DRNIIGYKLFDILPND---SIKKVDFCD-NYEYKSFYVNISKEGLITISDLKDNKSHISL 749

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             DSS                 + ++   ++G      ++  +     G  I A    KI
Sbjct: 750 FTDSS-----------------KTLVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKI 792

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + + A ++ F   ++  I   S+KG + R  + E++I   +T+  V     KD+++VS+ 
Sbjct: 793 SLLNA-ISTFRFEEDISIYFSSEKGLIKRTLLGELKIEGNSTQ--VYKFKHKDDKLVSI- 848

Query: 896 RIRESE 901
            I+E E
Sbjct: 849 LIKEHE 854



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 23/184 (12%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+ T VLF        + K + +P    Q+  +  INI +   G++I
Sbjct: 740 LKDNKSHISLFTDSSKTLVLFDD------EGKAYYIPAFMLQSIKEEGINISAFT-GDKI 792

Query: 631 T-----TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +     +   F ED S      + F+++ G ++R  L + ++I  +     K   +D+ L
Sbjct: 793 SLLNAISTFRFEEDIS------IYFSSEKGLIKRTLLGE-LKIEGNSTQVYKFKHKDDKL 845

Query: 686 S---VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
               ++   ++ +IL+ T+    +RF   A+    G+ + GV GISL   D+VI  +IV 
Sbjct: 846 VSILIKEHEEQKNILIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILASIVD 904

Query: 743 HADA 746
             D 
Sbjct: 905 ENDT 908


>gi|289706923|ref|ZP_06503260.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
 gi|289556358|gb|EFD49712.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
          Length = 868

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 281/764 (36%), Positives = 410/764 (53%), Gaps = 81/764 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +
Sbjct: 22  EQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSRMGLRPDRGH 81

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK AR+ GEVMGK HPHG+AAIYDA+ R+AQ +SLRL +++G GNFGS+D D PAA RYT
Sbjct: 82  VKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+  AA  L  DL + TVDF PNYD   Q+P VL A YPN+LVNG  GIAVGMATN+ 
Sbjct: 141 EARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAYPNLLVNGTTGIAVGMATNMA 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV G   ++ +P  DL+A+M  I GPD P+G  I+G  G+++AYATGRG+  +R
Sbjct: 201 PHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGTFRMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRV 310
               +E+ +  R  +VVTE+PY V    ++E+I   V  K++  IAD+ D +DR+ G R+
Sbjct: 261 AAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRL 320

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK G +   +L  LYR+T L+  F +N VAL   +P+   L+ +L+ +V  R +VV 
Sbjct: 321 QIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVR 380

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K RDR H++ GL +A+ ++DEV+ IIR S +   AR  LM            
Sbjct: 381 RRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM------------ 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   L++VQ   ILELRL +LT   R ++  E + L   I E   I
Sbjct: 429 --------------GVFDLTQVQADHILELRLRQLTKFSRIELEAERDELQAAIAELEAI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-----------------------DM 527
           L+S +RL  ++  EL +V DE    RRT ++E                          D+
Sbjct: 475 LASDARLREVVSSELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGAGQAGADL 534

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              D      +  +   L    R P++         +GR     R  D    +   +   
Sbjct: 535 MVPDTACWALLSTSGRLLRTADRTPIAP--------QGRR----RKHDAFASVVPTTARG 582

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALI------NILSLNQGERITTIMPFPEDES 641
            +   +S G +++ +   LP+    +   A+        ++ L +GE +  ++P      
Sbjct: 583 EIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL----- 637

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTT 700
              +  +   T HG V+R +      +NR    A+ L   D ++       E D ++  T
Sbjct: 638 ---DTVMALGTAHGVVKRVRPE--WPLNRQVVDAVALKDGDAVVGAAPAPDEADQLVFLT 692

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + GQ +R+  SA+R   G    GV GI LA GD V++  +   A
Sbjct: 693 RTGQLLRYAASAVRP-QGPAGGGVAGIRLAAGDTVLAFGVAPAA 735


>gi|27467955|ref|NP_764592.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|38604845|sp|Q8CSN8|PARC_STAES RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|27315500|gb|AAO04634.1|AE016747_131 topoisomerase IV subunit A [Staphylococcus epidermidis ATCC 12228]
          Length = 800

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 270/744 (36%), Positives = 429/744 (57%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR               S N  D KD  +L+ 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIR--------------NSKNKKDAKD--NLVA 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +  +T          E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 409 EYDFT----------EAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESS---------WNNLYVVFATKHGNVRRNKLSD 664
               L +I     G+ I+ I+P  EDE            N  + + ATK+G ++++  S 
Sbjct: 564 --HKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSASQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  I MK+  +DE+++V     +  I + T  G  + +  + +    G  + 
Sbjct: 622 F-KTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV+ I+L   D V+    V  +D+
Sbjct: 680 GVKSINLKDEDYVVMTEDVNDSDS 703



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  E+   ++ +L+ T  G+ +  P+ 
Sbjct: 508 TQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVH 564

Query: 712 AIRVFAGRNSVGVRGISLAKG-DQVISM-----AIVLHADADYDERICYMKHMSAQRRLI 765
            +          +R   L +   Q++ +      + ++ + D+     Y+  M+ +  +I
Sbjct: 565 KL--------ADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYI--MATKNGMI 614

Query: 766 --SGDTEEITSLKNDSSVEGNISE--ERCQELKLK-EQFILTVSEKGFGKRTSSYDFRIS 820
             S  ++  T+  N   +   + +  E    ++L+ +Q I  ++ KG      S  +  +
Sbjct: 615 KKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGM-----SLTYSTN 669

Query: 821 NRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             S  G+RA  V  IN  +   +V    VND+D II+V+ +G + R+  N ++ A RA +
Sbjct: 670 ELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQR 729

Query: 879 GVVIFS--TAKDERVVSVERIRES 900
           G+ +      K  R+V+   ++E+
Sbjct: 730 GITLLKELKKKPHRIVAGAVVKEN 753



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL++++ G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE VV+
Sbjct: 536 ---RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|145221415|ref|YP_001132093.1| DNA gyrase, A subunit [Mycobacterium gilvum PYR-GCK]
 gi|315441703|ref|YP_004074582.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
 gi|145213901|gb|ABP43305.1| DNA gyrase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260006|gb|ADT96747.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
          Length = 1261

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 288/787 (36%), Positives = 440/787 (55%), Gaps = 95/787 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN+
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFVPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     +DN + D    LDA+ E ++GPDFPT  +I+G  GI + Y TGRG
Sbjct: 612  PPHNLRELAEAVYWCLDNHEADEEATLDAVCERVKGPDFPTYGLIVGSQGIDDTYKTGRG 671

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DR 305
            SI +RGV  IE+ +  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+S DR
Sbjct: 672  SIRMRGVVEIEEDARGRTSLVITELPYQVNHDNFITSIAEQVRDGKLTGISNIEDQSSDR 731

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 732  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRHYVNHQ 791

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   E AR           
Sbjct: 792  LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIAR----------- 840

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 841  --SGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 885

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 886  DLEDILAKPERQRAIVHDELKEIVDKYGDDRRTRIIPADGDVADEDLIAREEVVVTITET 945

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 946  GYAKRTKSDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYD 1005

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT++G V++++L DF
Sbjct: 1006 LPEASRTARGQHVANLLAFQPEERIAQVIQLKTYEDA---PYLVLATRNGLVKKSRLVDF 1062

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C+ ++D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1063 -DSNRSGGIVAVNLRDGDELVGAVLCSADDDLLLVSAKGQSIRFSATDEALRPM-GRATS 1120

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+   + DQ++S+ +V            Y+   +      SG   + T+++ + S +
Sbjct: 1121 GVQGMRFNEEDQLLSLNVVREG--------TYLLVAT------SGGYAKRTAIE-EYSAQ 1165

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            G                       G G  T  YD R         R T V      GAL+
Sbjct: 1166 G---------------------RGGKGILTIQYDRR---------RGTLV------GALI 1189

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
                V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+ +
Sbjct: 1190 ----VDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGD 1245

Query: 902  IVDEAES 908
              DE E+
Sbjct: 1246 STDEVET 1252



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 90/130 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|160914999|ref|ZP_02077212.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
 gi|158432798|gb|EDP11087.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 276/740 (37%), Positives = 417/740 (56%), Gaps = 43/740 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I +  + + M + + +Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K
Sbjct: 9   EHDNSTIIATPLEEIMGSRFGSYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNLWDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +R   I+ QGN GS+D DP AA R
Sbjct: 69  AYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRHPQIDMQGNNGSIDDDPAAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K + +LL D+ KDTV +  N+D +  EP VL A YPN+LVNG  GIA G ATN
Sbjct: 129 YTEARLGKISEYLLKDIEKDTVTWSLNFDDTAYEPTVLPASYPNLLVNGITGIAAGYATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +   +  I NP   L+ LME + GPDFPTGA++ G  GIK+A+ TG+G I+
Sbjct: 189 IPPHNLNEAIQATIYRIRNPKCSLEELMEYMHGPDFPTGAIVQGIDGIKDAFRTGKGRIM 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+T    +QI+V EIPY+V K+ M++KI E+   K+I  I D+RDESDR G R
Sbjct: 249 IRSKVSIEQTKT-IQQIIVHEIPYEVVKSNMVKKIDEVRLNKKIEGILDVRDESDRNGLR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI++K+ A A +ILN LY+ T LQ  ++ N+VA+   +P +  L+ +L AF+A R EV+
Sbjct: 308 VVIDIKKDADAQLILNYLYKNTDLQVSYNYNVVAIVNKRPVQMGLVAMLDAFIAHRVEVI 367

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R++Y L+K   R H+L GL  A++ LDE++ +IR S +   ++R++++          
Sbjct: 368 EKRSRYDLDKKEKRCHILEGLIRAISVLDEIIALIRSSKDKADSKRKIIE---------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ +RL RL+      ++ E   L  EI     
Sbjct: 418 ----------------AFSFSEEQAEAIVTMRLYRLSSTDITLLQEESEQLQKEIAHLHC 461

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVV-TVSHLGY 547
           IL     L  ++ QEL +V     TPR T+        + D+  ++ E+ V+ T+S  GY
Sbjct: 462 ILDDPKVLRKVMIQELKAVNTAFPTPRLTKIEETIEEIVIDKLAMINEEQVMFTLSRDGY 521

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KRV L  Y A      G     +++ D +     VST   +LFF+++G      V+ L 
Sbjct: 522 AKRVSLRSYNASSDSLCG-----LKEGDRLIGCGEVSTLDKILFFTNMGTYGYVPVYELE 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G  L   + +   E+IT        +S  +  YVV  T+ G ++++ LS++ +
Sbjct: 577 EAKWKDVGTHLNAGIRMRGEEKITDAFVV---KSFQSQAYVVSVTRMGLIKKSALSEY-E 632

Query: 668 INRSGKIA--MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           ++R+ K    MKL   DE++        ++I + ++ G  VR+P+  + + + R S GV+
Sbjct: 633 VSRNNKTMSNMKLLDGDEVIRSFIAYDGDEIFIASETGFAVRYPLDMVPLTSPR-SKGVK 691

Query: 726 GISLAKGDQVISMAIVLHAD 745
            + L   D VI  A + H D
Sbjct: 692 AMKLV--DDVIGDACIYHQD 709



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VV+V+ +G +K+  LS Y   R   K  S + + D D V   FI      +   S  GF 
Sbjct: 614 VVSVTRMGLIKKSALSEYEVSR-NNKTMSNMKLLDGDEVIRSFIAYDGDEIFIASETGFA 672

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +  +  +P+ SP+++G   + ++    G+       + +D    N   VVF +K+G V+
Sbjct: 673 VRYPLDMVPLTSPRSKGVKAMKLVDDVIGDACI----YHQD----NKQLVVF-SKNGAVK 723

Query: 659 RNKLSDFIQINRSGK 673
           R KLS+     R  K
Sbjct: 724 RMKLSEIEITGRPAK 738


>gi|284031379|ref|YP_003381310.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810672|gb|ADB32511.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 816

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 290/755 (38%), Positives = 409/755 (54%), Gaps = 78/755 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E+ I  V ++DEM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +  +  ++
Sbjct: 12  EDFEERILDVDVSDEMRTSFLEYAYSVIYSRALPDARDGLKPVQRRILFSMAENNIRPDR 71

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK AR+ GEVMGKYHPHG+ AIYDAL R AQ WS+R+ LI+G GNFGS+D D PAA R
Sbjct: 72  GHVKSARVVGEVMGKYHPHGDGAIYDALVRTAQPWSMRVPLIDGHGNFGSLD-DGPAAMR 130

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECR+   A  + + L ++ VDF+PNYDG  +EP VL A +PN+LVNG  GIAVGMATN
Sbjct: 131 YTECRMAPPAMAMTNGLDENVVDFKPNYDGQEEEPAVLPAAFPNLLVNGAAGIAVGMATN 190

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV     +I +P  DLD LM  + GPD PTG  I+G  GIK+AYATGRGS  
Sbjct: 191 MAPHNLVEVVQALRHLIKHPKADLDDLMRFVPGPDLPTGGKIVGLEGIKDAYATGRGSFK 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
           +R  + IE  +  R+ IVVTE+PY V    ++EKI  LV+ K++  IAD++D +DR  G 
Sbjct: 251 MRATARIENVTPRRKGIVVTELPYTVGPEKVIEKIKTLVQAKKLQGIADVKDLTDRSHGT 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K G   + +L QLY+ T L+  FS+N V L   +P    L  +L  ++  R +V
Sbjct: 311 RLVIEVKNGFVPEALLEQLYKLTPLEDSFSINAVCLVDGQPRTLGLRELLDVYLEHRYDV 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR+++   KA+DR H++ GL IA+ ++DEV++IIR S +   AR              
Sbjct: 371 TRRRSEFRRKKAQDRLHIVDGLLIAILDIDEVIQIIRSSDDAGAARTR------------ 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            LID+ D             LSEVQ   IL++ L RLT   + ++  E   L  EI++  
Sbjct: 419 -LIDIYD-------------LSEVQANYILDMPLRRLTKFSKLELETEKAELEREIEKLT 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------LLDMEDEDCIVREDMV 539
            IL   + L  I+ +EL  V     TPRRT ++E           L++ D+ C       
Sbjct: 465 AILEDEALLRKIVSEELADVAKTYGTPRRTVLLESSGAAKTAAVPLEVTDDPCW------ 518

Query: 540 VTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           V +S  G + R     P          G+GR+       D +      +        +S 
Sbjct: 519 VLMSSAGLLARTNGVEPFG-------DGEGRA-----KHDAIVSAVKSTARGQYGLITSA 566

Query: 596 GFVYKEKVWRLP-----IGSPQARGKALI-NILSLNQGER---ITTIMPFPEDESSWNNL 646
           G + + +   LP       +P  +G A I   + L  GER   +TT+ P         ++
Sbjct: 567 GRLIRLESLDLPAVPTTANAPNLQGGAPIAEFVELEAGERALALTTMDP--------ESV 618

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            V   T  G V+R  + D +    S +I    D    + +VE  T E ++       Q +
Sbjct: 619 GVALGTATGVVKR-VVPDHLSNRDSWEIIRLADGDRVVGAVELATGEEELCFIASDAQLL 677

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            F  S +R   GR + G+ GI L+ G +V+    V
Sbjct: 678 HFNASVVRP-QGRTAGGMAGIRLSAGAKVVFFGAV 711


>gi|312864636|ref|ZP_07724867.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
 gi|311099763|gb|EFQ57976.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
          Length = 828

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 274/739 (37%), Positives = 410/739 (55%), Gaps = 66/739 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 12  NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 72  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ KDTV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 132 LSEIAGYLLQDIDKDTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +ID+P   +D LME + GPD PTGA+I G   I+ AY TG+G IV+R  +
Sbjct: 192 LAEVIDAVIYMIDHPKAKVDKLMEFLPGPDLPTGAIIQGADEIRKAYETGKGRIVVRSRT 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE     +EQIVVTEIPY VNKA +++KI ++    ++  IA++RDESDR+G R+ IEL
Sbjct: 252 EIEPLKAGKEQIVVTEIPYDVNKAVLVKKIDDVRINNKVPGIAEVRDESDREGLRIAIEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  ++ IL +++A R +++V R+K
Sbjct: 312 KKDADSQAILNYLLKYTDLQINYNFNMVAIDNFTPRQVGIVPILTSYIAHRRDIIVARSK 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 372 FDKKKAEKRLHIVEGLIRVLSILDEVIALIRDSENKADAKENL----------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      +  E  +L  EI     I+   
Sbjct: 415 -KVSYD--------FTEEQAEAIVTLQLYRLTNTDIVTLEEEDAALREEIATLKAIIGDE 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +   PRR+ +      ++++    IV ED  V+++  GY+KR  
Sbjct: 466 RTMFNLMKRELREVKKKFGNPRRSELQAQAQAIEIDTASLIVEEDTYVSLTRSGYLKRTS 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y A      G+     RD+D    +    T   +L F++LG V    ++R P+    
Sbjct: 526 PRSYNASTPEELGK-----RDDDKAVLIAPAKTTQHLLIFTNLGNV----IYR-PVHE-- 573

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDESSWNNLY----------VVFA-TKHGNVRRN 660
                L +I   + GE ++ T+  F  DE     LY            FA TK G ++R 
Sbjct: 574 -----LTDIRWKDIGEHLSQTLTNFATDEEV---LYAEIIDDFTPETYFAVTKMGQIKRV 625

Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             ++F        +S K A      D+++++     +  +++T K G  + FPI  + V 
Sbjct: 626 DRTEFQPWRSYKTKSSKYAKLKGDEDQVVAMAPIKLDAVMVITEK-GYALHFPIEEVPV- 683

Query: 717 AGRNSVGVRGISLAKGDQV 735
            G  + GV+ I+L  GD V
Sbjct: 684 VGSKAAGVKAINLKDGDSV 702


>gi|33239457|ref|NP_874399.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236982|gb|AAP99051.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 828

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 286/828 (34%), Positives = 449/828 (54%), Gaps = 82/828 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+   + + KCAR+ 
Sbjct: 9   ISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPERPFRKCARVV 68

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDAL R+ Q +S R  +++G GNFGS+D DPPAA RYTE RL   
Sbjct: 69  GDVLGKYHPHGDQAVYDALVRLVQSFSSRYPVLDGHGNFGSIDDDPPAAMRYTETRLAPI 128

Query: 139 AH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           A+  LL+++   TVDF  N+DGS QEP VL A+ P +++NG  GIAVGMATNIP HN+ E
Sbjct: 129 ANQALLNEIDDKTVDFSQNFDGSQQEPDVLPAQLPFLVLNGCSGIAVGMATNIPPHNINE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++G +A+I  P++  D L+EII GPDFPTG  IL   GIK  Y  G+GSI +RG++HIE
Sbjct: 189 IINGLIALIKKPELSEDKLIEIIPGPDFPTGGEILLSNGIKETYLKGKGSIPMRGITHIE 248

Query: 258 -----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                K    ++ IV+TE+PYQVNKAA +EK+A+LV   +I  IAD+RDESDR G R+VI
Sbjct: 249 EINPGKGKHRKKGIVITELPYQVNKAAWIEKLADLVNNSKIDGIADIRDESDRDGMRIVI 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R    +++ + LY+ T+LQ+ FS  ++AL   +P++ +L  +L  F+ +RE  + +R
Sbjct: 309 ELRRDIDHEIVKDTLYQKTNLQNNFSATLLALVNGQPKQLSLKRLLIIFLEYRELTIRKR 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK  L +   R  +L GL  A+ NL +V+ +I                     + KD I 
Sbjct: 369 TKNKLKQTLARLEILEGLIKALKNLKKVINLI--------------------ENAKDSI- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              D+   I S+  + L+E Q+  IL + L +LT L    + NE N L I  K   +IL 
Sbjct: 408 ---DAKIKIMSE--LKLNEKQSEGILSMPLRKLTNLETQGLYNEANDLKILEKNLREILE 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDMVVTVSH 544
           +RS+LL  +  EL  +K +  + R+T++VEG          ++     + R+    ++  
Sbjct: 463 NRSQLLSEMVNELKLLKKKFGSQRKTKLVEGGDELVAERNANLRPNAELQRKKAFESLPK 522

Query: 545 LGYV---KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFFSSLGFVY 599
            GY+       + + R Q       +   +  E  V    L+ ++    +L  ++ G + 
Sbjct: 523 DGYLLIQDDDQVKILRPQILTKLNLTESCLLGEGPVPTRLLWPIAKQPKILAITNHGKIA 582

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K W      P    + L + L   +GE+IT ++P    E    NL +   +  G  +R
Sbjct: 583 LLK-WEFAGSQPGQLNRFLPSGL---EGEKITNLLPLLNTE----NLSLGLLSTDGRFKR 634

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------- 711
             L++ I I+      +KL     + S   C     +L+ T +G+ ++  I+        
Sbjct: 635 TNLNEIIDISGRATTILKLKDGVFLKSALLCPLNGHLLVVTNIGRIIKLKINEESIPLMG 694

Query: 712 -------AIRVFAGRNSVGVRGISLAKGDQVISMA----IVLHADADYDER--------- 751
                   I++F G N +G       +   +I ++    ++ H+     E          
Sbjct: 695 KLAQGSVMIKLFPGENIIGALTTKEKENCNIILISEKGTVIKHSLKSIKESSKGDLGEIG 754

Query: 752 ICYMKHMSAQRRLI-SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           I +    + + RLI + + +++  +K +    G +S  + ++LK  E+
Sbjct: 755 ISFKDKNNQKDRLIQTYNAKQLVGIKTNQGKHGRVSSNQIEKLKFNEE 802


>gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 794

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 273/739 (36%), Positives = 411/739 (55%), Gaps = 53/739 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARISG 79
           + +E +  YL YA++VI  RA+PD+RDGLKPV RR+L+GM     +  + KY K A++ G
Sbjct: 42  LAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQKSAKVVG 101

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG+YHPHG+A+IYDAL R+AQD+SLR  L++G GNFGS+DGD  AA RYTECRL   +
Sbjct: 102 TIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTECRLAGIS 161

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L +LGK TV FRPNYDG+  EP+V+ +R P +L+NG  GIAVGMATNIP H+LGE+ 
Sbjct: 162 GEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELC 221

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEK 258
           D   A+I+N ++ +  LM+ ++GPDFPTG  IL  +  ++  Y TG+GS+ IRG   +E 
Sbjct: 222 DALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIRGEYALED 281

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                +QI++T IPY VNK+ ++ KI +LVRE+++  + D+RDES ++  R+V+E KR A
Sbjct: 282 VKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKE-VRIVLEFKRDA 340

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFVAFREEVVVRR 372
           S ++++  LY++T LQ+ F VN+  L          P+R  L  IL+ F+ FR EVV +R
Sbjct: 341 SPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKR 400

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L + + R H+L G       LDE++RIIR S   + A ++LM R            
Sbjct: 401 FQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLMAR------------ 448

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L EVQ  AILE++L +L  L    I+ EL    +E+K    IL 
Sbjct: 449 --------------FKLDEVQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILK 494

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVSHLGYVK 549
            + +L G +K EL  +K   +  RRTRI       ++  ++  IV ED  V ++  G++K
Sbjct: 495 DKRKLWGTVKDELAEIKATYNDKRRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV         R  K  S   +R+ D V  +   S  ++++ FS+ G  Y  +   +P  
Sbjct: 555 RV---------REVKDPSTTRLREGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPAS 605

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +    G  +  +   + GERI   +    D        +V  TK G   R  L   ++++
Sbjct: 606 T--GYGDPVQKLFKFDDGERIVGALSL--DSRLPRPQKLVAVTKDGLGLRFPLEGHVEVS 661

Query: 670 -RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            RSG+   K    DEI+ V+   +++ + + T+         + +   AG    GV  I 
Sbjct: 662 TRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCRAAEVNELAGPGK-GVLVIK 720

Query: 729 LAKGDQVISMAIVLHADAD 747
           +  GD+V+    V     D
Sbjct: 721 VEPGDRVMEFLAVAPGQKD 739


>gi|283458283|ref|YP_003362902.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283134317|dbj|BAI65082.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 841

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 285/765 (37%), Positives = 423/765 (55%), Gaps = 87/765 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK A
Sbjct: 20  IVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++GEVMGK HPHG+AAIYDA+ R+AQ ++LRL L++G GNFGS+D D PAA RYTE R+
Sbjct: 80  RVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DGPAAARYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 APAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAVGMATNMAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G   +I +P+  L  +M+ I GPD PTG  I+G  GI++AY TGRG+   R    
Sbjct: 199 REVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGIRDAYETGRGTFKTRAKVS 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IE+ S  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VIE+
Sbjct: 259 IEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLTDRTNGLRLVIEI 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L  LY++T L+  F +N VAL   +P+   L+ +++ ++  R  VV RRT+
Sbjct: 319 KNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLDLMRVYIDHRLNVVRRRTE 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K  DR H++ GL +A+ ++DEV++IIR S     AR +L          K + DL 
Sbjct: 379 FRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL----------KVVFDLT 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D                 Q   ILELRL +LT   R ++  E ++L  EI E   ILSS 
Sbjct: 429 D----------------TQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILSSD 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---------VEGL-------------LDMEDEDC 532
           + L  ++ +EL  V +   T RRT++         +E +             L++ D+ C
Sbjct: 473 AALRELVSEELAEVAERYGTDRRTQLKTKDDMQVAIEAVTAQSKAKKSLGLALEIADDPC 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF--IVSTHT--S 588
                  V +S  G + R P         G   R  +V   + F  D+F  IV T     
Sbjct: 533 W------VLLSASGMMGRTP---------GKPIREALVDPGKRFKHDVFTSIVPTTARGE 577

Query: 589 VLFFSSLGFVYKEKVWRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESS 642
           +   +S G + +  V  + +     G+P  A       ++ L +GE++  ++P       
Sbjct: 578 IGAVTSAGRMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPL------ 631

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTK 701
             N  +  AT  G ++R  L+    +N++    MKL   DEI++   C  ++ +L   T+
Sbjct: 632 --NTVLALATAGGVIKR--LNPDYPLNQTEWDIMKLKDDDEIVAAAPCPTDDMVLTFVTR 687

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + + F  + +R   GR   G+ GI LA GD++I++ +    DA
Sbjct: 688 DAKLLTFDAAKVRP-QGRTGGGIAGIKLADGDRLIALGVTAPGDA 731


>gi|166368730|ref|YP_001661003.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166091103|dbj|BAG05811.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 914

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/515 (46%), Positives = 333/515 (64%), Gaps = 33/515 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++Y+AL RM QD+S R  L+ G GNFGS+D DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRL 132

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  +L  + +  V+F  N+D S QEPVVL A+ P +++NG  GIAVGMATNIP HN
Sbjct: 133 AGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVV+G +A+IDNPD+  + L+EII GPDFPTG  IL  TGI+ AY TGRG I +RGV+
Sbjct: 193 LGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDTGIREAYRTGRGIIPVRGVA 252

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             E      K   +R  IVVTE+P+QVNKAA +EKIAELV   ++  IAD+RDES+R+G 
Sbjct: 253 KTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDESNREGI 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR +    +L  LY+ T+LQ+ F   ++AL   +P + +L  +L+ F+ FRE  
Sbjct: 313 RVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQPRQLSLKQVLQEFLRFRETT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+    L +A DR H++ GL +A+ N+D VV I++ +P+  TA+              
Sbjct: 373 LTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAK-------------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                     Y   ++  + +S+ Q  +IL + L RLTGL R  +  E   L  +I++  
Sbjct: 419 ----------YRFQAE--LGISDAQADSILAMPLRRLTGLERQKLETEATELQAKIQQLE 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
            +L +R   L  +K+EL S+K +    RRT+I  G
Sbjct: 467 TLLHNRQEFLKSLKKELRSLKKKFADSRRTKIPTG 501


>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
 gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
          Length = 818

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 271/719 (37%), Positives = 414/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKDTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +PD 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIPPHNLGEVIDATIYLLKHPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGA+I+G  GIK AY TGRG I +R  + I+   G R++IV TEI
Sbjct: 203 TLEDLMKYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRAKTSIQDIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNK+ +++KI E+   K I  IA++RDE+DR G  +VIELK+   A  ILN L++ T
Sbjct: 263 PFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDTDAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++    +VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKHILISYLEHEVDVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                             +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK--------------------------YKFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R  L   I +EL +VK E
Sbjct: 417 KQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT+I +    +E DE  +V ++ V V +S  GY+KR  +  Y++      G    
Sbjct: 477 FSNPRRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST +++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEK 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F  D+ S  N+  + AT  G +++ +L++ +Q  R+ K     A+KL ++D +L
Sbjct: 592 IIRV--FVLDKLSA-NINFLLATNDGYIKQLELAN-LQPTRTYKSRAMTAIKLKNKDSLL 647

Query: 686 -SVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             V+    +   +I L T     +R+ IS I   +G  +VGV+  +L + D +++  +V
Sbjct: 648 VGVDAVKPDAKKEITLFTHRAYAIRYDISEIPT-SGSKAVGVKSANLKEDDYIVNYVLV 705


>gi|329116178|ref|ZP_08244895.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906583|gb|EGE53497.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
          Length = 819

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 276/749 (36%), Positives = 418/749 (55%), Gaps = 65/749 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NVQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R  L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNRETLVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEISGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTG +I G   IK AY TG+G +++R  +
Sbjct: 183 LAEVIDAVVYMIDHPKASLDKLMEFLPGPDFPTGGIIQGAEEIKKAYETGKGRVIVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E   G ++QIVVTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EFETLKGGKQQIVVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A A  +LN L +YT LQ  ++ NMVA++ Y P +  LI IL +++A R+ ++V+R++
Sbjct: 303 KKDADAQNVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGLIKILSSYIAHRKNIIVKRSQ 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S               N SD K+ + L 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASD--------------NKSDAKENLKLS 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D             SE Q  AI+ L+L RLT      ++NE   L   I     I+ + 
Sbjct: 409 YD------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEEKELRDLITMLAAIIGNE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +    RR+ + VE   +++     IV E+  V+V+  GY+KR  
Sbjct: 457 ATMFNVMKRELREVKKKFANARRSELQVEAETIEINTASLIVEEETFVSVTRSGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSIDEIGK-----RDDDQLVFVEAAKTTQHLLIFTNLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES----------SWNNLYVVFATKHGNVRRNK 661
                L +I   + GE ++ TI  +  DE           +    Y V  T+ G ++R +
Sbjct: 563 ---HELTDIRWKDTGEHLSQTITNYGTDEEVLHVEIVDQFTKGTYYSV--TQLGQIKRFE 617

Query: 662 LSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
             D        ++S K A   + +D I+S+     E DI L +  G  +RF    + V  
Sbjct: 618 RKDLAPWRTYRSKSTKYAKIKNDQDRIISISPIFFE-DITLVSHNGYALRFSSQEVPV-Q 675

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA 746
           G  S GV+ ++L K D  I+ A ++ +D+
Sbjct: 676 GLKSAGVKAMNL-KNDDYIASAFIVQSDS 703


>gi|152965512|ref|YP_001361296.1| DNA topoisomerase IV subunit A [Kineococcus radiotolerans SRS30216]
 gi|151360029|gb|ABS03032.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 826

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 293/751 (39%), Positives = 409/751 (54%), Gaps = 71/751 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  EMQ ++L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+   + +VK A
Sbjct: 17  IVDIDVEQEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILYMMQDMGLVPTRAHVKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDAL R AQ +++RL L++G GNFGS+D  P AA+RYTE R+
Sbjct: 77  RVVGEVMGKLHPHGDVAIYDALVRQAQPFTMRLPLVDGHGNFGSLDAGP-AAQRYTEARM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +   L +D VDF PNYD    EP VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 136 APAALLMTTGLDEDVVDFVPNYDDRLTEPGVLPAAFPNLLVNGASGIAVGMATNMPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+    ++ +PD DL ALM  + GPDFPTG  ++G  GI++AYATGRGS   R    
Sbjct: 196 VEVVNAARHLLKHPDADLPALMRFVPGPDFPTGGRVVGLEGIRDAYATGRGSFRTRASVR 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IEK  G R+ IVVTE+PY      ++EKIA+ V+ K++  +AD+ D SDR  G R+VIE+
Sbjct: 256 IEKI-GRRQGIVVTELPYGAGPERLIEKIADNVKNKKLQGVADVTDLSDRHHGMRLVIEV 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QLYR T ++  F +N VAL   +P    L  +L+ F+  R +VV RRT+
Sbjct: 315 KNGFVPEAVLEQLYRLTPMEESFGINNVALVEGQPRTLGLKELLEVFIGHRVDVVRRRTR 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+DR H++ GL  A+ ++DEV+ I+R S + + A   L +R              
Sbjct: 375 FRLGKAQDRLHLVDGLLTAIVDIDEVIAIVRSSDDAQAALARLTER-------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q R IL+++L RLT   R ++  E   L   I +   IL   
Sbjct: 421 ------------FSLSEAQGRYILDMQLRRLTRFSRIELEREQAELRATIAQLQAILDDE 468

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG----------LLDMEDEDCIVREDMVVTVSH 544
            RL G++  EL +V  E  TPRRT ++             L++ D+ C       V +S 
Sbjct: 469 GRLRGLVGDELAAVAAEHGTPRRTVLLTSSGPASGAAPTQLEIGDDPCW------VLLSS 522

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G + R       A+  G +GR        D V      +    V   +S G + +  V 
Sbjct: 523 AGLLAR----TGSAEPLGTEGRR----SRHDLVVAAAPATARGHVGVLTSAGRLVRVPVL 574

Query: 605 RLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKH 654
            LP+     G P  A G  +   ++  +GER  TI+P P    ED    ++     AT  
Sbjct: 575 DLPVLPETAGRPNLAGGTGVKEFVTFGKGERALTIVPLPVTGVEDP---DDPGFALATAG 631

Query: 655 GNVRRNKLSDFIQINRSGKIAMK---LDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           G V+R  L           I +K      RDE++ +V   T E +++  T   Q +RFP 
Sbjct: 632 GVVKRVVLDPLGNREEVEVITLKDLGPRQRDEVVAAVGLTTGEEELVFVTSDAQLLRFPA 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + +R   GR + G+ GI L+ G +V++M  V
Sbjct: 692 ALVRP-QGRAAAGMAGIKLSAGARVVAMTAV 721


>gi|314936491|ref|ZP_07843838.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655110|gb|EFS18855.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 799

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/725 (36%), Positives = 423/725 (58%), Gaps = 40/725 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  ID+P+I ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 DEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+ +++  + EVV  RT Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVANRTTY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A  R H++ GL  A++ LDEV+ +IR S N + A+  L++                
Sbjct: 365 DLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   I+E  +IL +  
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  ++    T R + I   + +++ D++ IV  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKKELTEIRKRFKTSRLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V +++ D +     V+T  + L F++ G      + ++     + 
Sbjct: 519 RSFNAS-----GVTEVGLKEGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+SL + ERI  +  F E        Y++ AT++G ++++  S F +  R  K
Sbjct: 574 LGQHVSQIVSLEENERIIDV--FNEKTFDGKAFYII-ATRNGMIKKSNQSLF-KTTRFNK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             IA KL + DE+++V   TQE  I++ T  G  + +    +    G  + GV+ I+L  
Sbjct: 630 PLIATKLKNEDEVVNVLRITQEQMIIVITHKGMSLTYSTEELS-DTGLRAAGVKSINLKD 688

Query: 732 GDQVI 736
            D VI
Sbjct: 689 EDYVI 693



 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           SS+E  ISE +  +  +   E+ +L+++  G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 SSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLKEGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI---RIASRATKGVVIFSTAKDERVVS 893
              +L+    VN  D  ++ ++KG  + +P+++I   R          I S  ++ER++ 
Sbjct: 536 ---SLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIID 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|323127402|gb|ADX24699.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 819

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L ++   + GE ++ TI  F  +E        +S++    +  T++G  +R +  
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQ 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +        ++S K     D++D ++++     E D+LL T  G  +RF    + +  G 
Sbjct: 620 ELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME-DLLLVTYHGYALRFSSQDVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D+++S
Sbjct: 678 KSSGVKGINLKNEDKLVS 695



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V+  G+  R SS D  I      G++  ++   NE   LV+ F V  N   +L + +
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLK--NE-DKLVSTFSVTSNSFFVL-TQR 710

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS--TAKDERV 891
           G+L R+ V++I   SRA +G+++     AK  RV
Sbjct: 711 GSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRV 744


>gi|57866862|ref|YP_188505.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis RP62A]
 gi|251810788|ref|ZP_04825261.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876209|ref|ZP_06285076.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|293366679|ref|ZP_06613355.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674759|sp|Q5HPI5|PARC_STAEQ RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|57637520|gb|AAW54308.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis RP62A]
 gi|251805716|gb|EES58373.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295234|gb|EFA87761.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|291318980|gb|EFE59350.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735889|gb|EGG72168.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU028]
          Length = 800

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/744 (36%), Positives = 429/744 (57%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR               S N  D KD  +L+ 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIR--------------NSKNKKDAKD--NLVA 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +  +T          E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 409 EYDFT----------EAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESS---------WNNLYVVFATKHGNVRRNKLSD 664
               L +I     G+ I+ I+P  EDE            N  + + ATK+G ++++  S 
Sbjct: 564 --HKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSASQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  I MK+  +DE+++V     +  I + T  G  + +  + +    G  + 
Sbjct: 622 F-KTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV+ I+L   D V+    V  +D+
Sbjct: 680 GVKSINLKDEDYVVMTEDVNDSDS 703



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  E+   ++ +L+ T  G+ +  P+ 
Sbjct: 508 TQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVH 564

Query: 712 AIRVFAGRNSVGVRGISLAKG-DQVISM-----AIVLHADADYDERICYMKHMSAQRRLI 765
            +          +R   L +   Q++ +      + ++ + D+     Y+  M+ +  +I
Sbjct: 565 KL--------ADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYI--MATKNGMI 614

Query: 766 --SGDTEEITSLKNDSSVEGNISE--ERCQELKLK-EQFILTVSEKGFGKRTSSYDFRIS 820
             S  ++  T+  N   +   + +  E    ++L+ +Q I  ++ KG      S  +  +
Sbjct: 615 KKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGM-----SLTYSTN 669

Query: 821 NRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             S  G+RA  V  IN  +   +V    VND+D II+V+ +G + R+  N ++ A RA +
Sbjct: 670 ELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQR 729

Query: 879 GVVIFS--TAKDERVVSVERIRES 900
           G+ +      K  R+V+   ++E+
Sbjct: 730 GITLLKELKKKPHRIVAGAVVKEN 753



 Score = 38.9 bits (89), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL++++ G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE VV+
Sbjct: 536 ---RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|294815537|ref|ZP_06774180.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|294328136|gb|EFG09779.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 788

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 288/750 (38%), Positives = 414/750 (55%), Gaps = 72/750 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+  ++ YV
Sbjct: 30  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLRPDRGYV 89

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           KCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA RYT
Sbjct: 90  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 149

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVGMATN+P
Sbjct: 150 ECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVGMATNMP 209

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY TGRG+  IR
Sbjct: 210 PHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYETGRGTFKIR 269

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
             + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  G R+
Sbjct: 270 ATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDRAHGLRL 329

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R  VV 
Sbjct: 330 VIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRFTVVR 389

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R          
Sbjct: 390 RRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER---------- 439

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQT+ IL+  L RLT   R ++ +E + L  EI     I
Sbjct: 440 ----------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRI 483

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDMVVTV 542
           L S + L  ++  EL SV  +  T RRT ++E          L++ D+ C       V +
Sbjct: 484 LESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPC------RVLL 537

Query: 543 SHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           S  G + R     PL     +R              D V      +    +   +S G +
Sbjct: 538 SSTGLLARTVTGDPLPEPGPKR-----------ARHDLVVSSVTATARGDIGAVTSAGRL 586

Query: 599 YKEKVWRLP-----IGSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +  V  LP       +P   G A L   LSL   E +  +     DESS     +   T
Sbjct: 587 LRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTL--DESSQG---LALGT 641

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
             G V+R  + D+   N+       L   D I+   E  T E D++  T   Q +R+P +
Sbjct: 642 LQGVVKR-VVPDY-PANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAA 699

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R   GR + G+ G+ LA G +V+S   V
Sbjct: 700 QVRP-QGRAAGGMAGVKLADGARVLSFTAV 728


>gi|218679283|ref|ZP_03527180.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 316

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/316 (69%), Positives = 261/316 (82%)

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           ALNG KPE+  L+ +L+AFV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R
Sbjct: 1   ALNGGKPEQLALLDMLRAFVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIR 60

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q RAILELRL
Sbjct: 61  VIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRL 120

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           ARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+
Sbjct: 121 ARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVD 180

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
           G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+
Sbjct: 181 GGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFV 240

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+S
Sbjct: 241 VNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEAS 300

Query: 643 WNNLYVVFATKHGNVR 658
           W+NL V+F+T  G VR
Sbjct: 301 WDNLDVMFSTTRGTVR 316


>gi|156888557|gb|ABU96683.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/738 (36%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L ++   + GE ++ TI  F  +E        +S++    +  T++G  +R +  
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQ 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +        ++S K     D++D ++++     E D+LL T  G  +RF    + +  G 
Sbjct: 620 ELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME-DLLLVTYHGYALRFSSQDVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D+++S
Sbjct: 678 KSSGVKGINLKNEDKLVS 695



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V+  G+  R SS D  I      G++  ++   NE   LV+ F V  N   +L + +
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLK--NE-DKLVSTFSVTSNSFFVL-TQR 710

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS--TAKDERV 891
           G+L R+ V++I   SRA +G+++     AK  RV
Sbjct: 711 GSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRV 744


>gi|73916132|gb|AAZ92934.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 639

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/701 (37%), Positives = 402/701 (57%), Gaps = 85/701 (12%)

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  
Sbjct: 1   NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSR 60

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE
Sbjct: 61  TEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIE 120

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT
Sbjct: 121 VKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRT 180

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +             
Sbjct: 181 RFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------- 227

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL+ 
Sbjct: 228 -------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAK 274

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR+ 
Sbjct: 275 PERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLD 334

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     
Sbjct: 335 QDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRT 394

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G
Sbjct: 395 AKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNG 452

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +G
Sbjct: 453 LKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREG 511

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+  +++     D DE                                          
Sbjct: 512 DTVVGASLI----TDQDE------------------------------------------ 525

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  ++ 
Sbjct: 526 -------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDED 576

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +++++D G +IR  +  I    RAT GV +    +D ++V+
Sbjct: 577 LMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVT 617



 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 321 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 377

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 378 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 426


>gi|120401035|ref|YP_950864.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
 gi|119953853|gb|ABM10858.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 1262

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 282/778 (36%), Positives = 425/778 (54%), Gaps = 94/778 (12%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN+
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     ++N + D    L+A+ E ++GPDFPT  +I+G  GI + Y TGRG
Sbjct: 612  PPHNLRELAEAVYWCLENYEADEEATLEAVCERVKGPDFPTHGLIVGSQGISDTYTTGRG 671

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DR 305
            SI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+S DR
Sbjct: 672  SIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 731

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 732  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVNHQ 791

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   E AR           
Sbjct: 792  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIAR----------- 840

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                LI+L+D             + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 841  --SGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 885

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 886  DLEDILAKPERQRAIVHDELKELVDKYGDDRRTRIIPADGDVADEDLIAREEVVVTITET 945

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 946  GYAKRTKSDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYD 1005

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E +    Y+V AT++G V++++L DF
Sbjct: 1006 LPEASRTARGQHVANLLAFQPEERIAQVIQLKSYEDA---PYLVLATRNGLVKKSRLVDF 1062

Query: 666  IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
               NRSG I A+ L   DE++    C+ E+D+LL +  GQ +RF  +  A+R   GR + 
Sbjct: 1063 -DSNRSGGIVAVNLRDGDELVGAVLCSAEDDLLLVSAKGQSIRFSATDEALRPM-GRATS 1120

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GV+G+   + DQ++S+ +V                          DT  + +     +  
Sbjct: 1121 GVQGMRFNEEDQLLSLNVVRE------------------------DTYLLVATSGGYAKR 1156

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              I E   Q               G G  T  YD R         R T          LV
Sbjct: 1157 TAIEEYSAQ------------GRGGKGILTIQYDRR---------RGT----------LV 1185

Query: 843  AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+
Sbjct: 1186 GALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEA 1243



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/130 (54%), Positives = 89/130 (68%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 123/306 (40%), Gaps = 46/306 (15%)

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-- 523
             GL +DDI N              + S+   +L    Q  +      D P  +R   G  
Sbjct: 969  AGLKQDDIVNHFF-----------VCSTHDWILFFTTQGRVYRAKAYDLPEASRTARGQH 1017

Query: 524  ---LLDMEDEDCIVR-------ED--MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               LL  + E+ I +       ED   +V  +  G VK+  L  + + R GG     V +
Sbjct: 1018 VANLLAFQPEERIAQVIQLKSYEDAPYLVLATRNGLVKKSRLVDFDSNRSGGI--VAVNL 1075

Query: 572  RDEDFVTDLFIVSTHTSVLFFSSLG----FVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            RD D +    + S    +L  S+ G    F   ++  R     P  R  + +  +  N+ 
Sbjct: 1076 RDGDELVGAVLCSAEDDLLLVSAKGQSIRFSATDEALR-----PMGRATSGVQGMRFNEE 1130

Query: 628  ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEI 684
            +++ ++    ED       Y++ AT  G  +R  + ++    R GK  + ++ D R   +
Sbjct: 1131 DQLLSLNVVRED------TYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRRRGTL 1184

Query: 685  LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            +       + ++   T  G  +R     +R  AGR + GVR ++L +GD +I++A    A
Sbjct: 1185 VGALIVDDDTELYAITSGGGVIRTAARQVRK-AGRQTKGVRLMNLGEGDTLIAIARNAEA 1243

Query: 745  DADYDE 750
                DE
Sbjct: 1244 GDSTDE 1249


>gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 779

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/753 (36%), Positives = 410/753 (54%), Gaps = 71/753 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74
           I +V+I DE++  +LTYA++V+ GRA+PD+RDGLKPV RRIL+ M Q + +  +KK +KC
Sbjct: 5   IETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKKALKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMG YHPHG++A+Y+AL RM+Q+W LR+ L+ GQGNFGSVDGDPPAA RYTE +
Sbjct: 65  AKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRYTEAK 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD+LG+DTVD   +YDG+  EP VL A++PN+LVNG  GIAVGMAT IP HN
Sbjct: 125 LTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           LGEV+  C  +IDNPD  +  L++ I+GPDFP G  IL  R  ++  Y  G GSI ++  
Sbjct: 185 LGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIKVQAE 244

Query: 254 SHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVV 311
              EK   DR  QIVVT IPY VNK  +   I  ++ ++++  +    +ES ++ G R+V
Sbjct: 245 WKEEKI--DRGVQIVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGLRLV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVAL------NGYKP-ERFTLIGILKAFVAF 364
           +E+K G   ++++  LY++T LQ  +S NM AL       G KP +R +L  +L  F+ F
Sbjct: 303 LEIKNGTDPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEFLKF 362

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR +Y L + R R H+L G  I    LD  +++IR S     A  +L       
Sbjct: 363 RLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIRESSGKPDAAEKL------- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q  AIL+ +L ++  L    I +EL     + 
Sbjct: 416 -------------------KAAFKLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQA 456

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
           KE   IL+S  +L G+IK EL ++ ++    R+TR+   E +L+  +E  I RE+  V +
Sbjct: 457 KEIETILASEKKLWGVIKSELEALIEKFPERRKTRMASDEDVLEFNEEAYIARENTNVVL 516

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVV----MRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +  G +KRV             GR   V    + + D V  +   ST   V FF+  G  
Sbjct: 517 TKNGRIKRV-------------GRLASVETTRVEEGDAVAAVVPGSTLDHVSFFADDGAA 563

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERIT---------TIMPFPEDESSWNNLYVV 649
           Y  ++  +P  +    G+ +     L  G ++          T    P    +    ++V
Sbjct: 564 YTMRINEVP--ATAGYGEPITKFFKLADGAKVVAAVTTDPRFTPADLPAKGDTPGGPFLV 621

Query: 650 FATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            AT++G V R  L+ F  +  + G+  +KL+  D+++ V     E  ++L T  G    F
Sbjct: 622 VATRNGFVLRLPLTAFRSESTKVGRRFVKLEEGDKVVMVRLAGAEEGVMLATSGGYVTHF 681

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           P+  + + +G    GV GI L   D  +   +V
Sbjct: 682 PLDQVSILSGAGK-GVIGIELESKDDCLGGVLV 713


>gi|159029636|emb|CAO87714.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 884

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/515 (46%), Positives = 333/515 (64%), Gaps = 33/515 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++Y+AL RM QD+S R  L+ G GNFGS+D DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRL 132

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  +L  + +  V+F  N+D S QEPVVL A+ P +++NG  GIAVGMATNIP HN
Sbjct: 133 AGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVV+G +A+IDNPD+  + L+EII GPDFPTG  IL  TGI+ AY TGRG I +RGV+
Sbjct: 193 LGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDTGIREAYRTGRGIIPVRGVA 252

Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             E      K   +R  IVVTE+P+QVNKAA +EKIAELV   ++  IAD+RDES+R+G 
Sbjct: 253 KTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDESNREGI 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR +    +L  LY+ T+LQ+ F   ++AL   +P + +L  +L+ F+ FRE  
Sbjct: 313 RVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQPRQLSLKQVLQEFLRFRETT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+    L +A DR H++ GL +A+ N+D VV I++ +P+  TA+              
Sbjct: 373 LTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAK-------------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                     Y   ++  + +S+ Q  +IL + L RLTGL R  +  E   L  +I++  
Sbjct: 419 ----------YRFQAE--LGISDPQADSILAMPLRRLTGLERQKLETEATELQTKIQQLE 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
            +L +R   L  +K+EL S+K +    RRT+I  G
Sbjct: 467 TLLHNRQEFLKSLKKELRSLKKKFADSRRTKIRTG 501


>gi|326443887|ref|ZP_08218621.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 815

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 288/750 (38%), Positives = 414/750 (55%), Gaps = 72/750 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+  ++ YV
Sbjct: 14  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLRPDRGYV 73

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           KCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA RYT
Sbjct: 74  KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 133

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVGMATN+P
Sbjct: 134 ECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVGMATNMP 193

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY TGRG+  IR
Sbjct: 194 PHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYETGRGTFKIR 253

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
             + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  G R+
Sbjct: 254 ATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDRAHGLRL 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R  VV 
Sbjct: 314 VIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRFTVVR 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R          
Sbjct: 374 RRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER---------- 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQT+ IL+  L RLT   R ++ +E + L  EI     I
Sbjct: 424 ----------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDMVVTV 542
           L S + L  ++  EL SV  +  T RRT ++E          L++ D+ C       V +
Sbjct: 468 LESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPC------RVLL 521

Query: 543 SHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           S  G + R     PL     +R              D V      +    +   +S G +
Sbjct: 522 SSTGLLARTVTGDPLPEPGPKR-----------ARHDLVVSSVTATARGDIGAVTSAGRL 570

Query: 599 YKEKVWRLP-----IGSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +  V  LP       +P   G A L   LSL   E +  +     DESS     +   T
Sbjct: 571 LRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTL--DESSQG---LALGT 625

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
             G V+R  + D+   N+       L   D I+   E  T E D++  T   Q +R+P +
Sbjct: 626 LQGVVKR-VVPDY-PANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAA 683

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +R   GR + G+ G+ LA G +V+S   V
Sbjct: 684 QVRP-QGRAAGGMAGVKLADGARVLSFTAV 712


>gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis]
          Length = 436

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/458 (47%), Positives = 308/458 (67%), Gaps = 27/458 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
                              SE Q  AILELRL +LTGL
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGL 435


>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
 gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
          Length = 818

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/719 (37%), Positives = 412/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ K TV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKQTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++  PD 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPHNLGEVIDATIYLLKYPDA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R  + I++  G R++IV TEI
Sbjct: 203 SLEDLMKYVKGPDFPTGAIVMGTKGIKEAYRTGRGRIQVRAKTTIQEIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  IA++RDE+DR G  +VIELK+ A A  ILN L++ T
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++   E+VV +RTK+ L+KA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKRTKFDLDKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                             +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK--------------------------YKFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R+ L   I +EL +VK E
Sbjct: 417 KQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRATLEKEIIKELNAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT+I E    +E DE  +V ++ V V +S  GY+KR  L  Y++      G    
Sbjct: 477 FANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKRSSLRSYQSTNDDDNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETKWKETGQHLSQEIGLDSDEQ 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDE-I 684
           I  +  F +  +  N    + AT  G +++ +L++ +Q  R+ K     A+KL  +D  +
Sbjct: 592 IIRVFVFDKLNTDCN---FILATNDGYIKQLELAN-LQPTRTYKSRAMTAIKLKGKDSYV 647

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + V+    +N  +I L T     +R+ +S I   +G  +VGV+  +L   D +++  +V
Sbjct: 648 VGVDLIKSDNHKEITLFTHRAYAIRYDVSEIPT-SGAKAVGVKSANLKDDDYIVNYVLV 705


>gi|229552217|ref|ZP_04440942.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539628|ref|YP_003174127.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314403|gb|EEN80376.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151304|emb|CAR90276.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus Lc 705]
          Length = 813

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/734 (37%), Positives = 415/734 (56%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV+  + ++ +P  DL  LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVVNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+VA R +VV RRT+Y
Sbjct: 305 KEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTRRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA+ R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 ELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQ--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      +++E   L   I E  DIL+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I++EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 SRDRVIEKELKRIAKEYGDDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G +    V+ +     + 
Sbjct: 519 RSYQAVDPEDNG-----LKPNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F  D+      + V  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGTDEKVLAVFAF--DQLDLAGTF-VLGSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL +   +++    T  Q  D+ + ++    + FP++ +     R + GV+ +
Sbjct: 630 RKPMMAMKLKTPGAVVTNAYFTTDQAQDVFVVSRHAYGLDFPLAEVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPEDEVVNFILV 702


>gi|21904354|gb|AAM79232.1| putative DNA topoisomerase IV subunit C [Streptococcus pyogenes
           MGAS315]
          Length = 807

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/721 (36%), Positives = 412/721 (57%), Gaps = 60/721 (8%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 8   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 67

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 68  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 127

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V +ID+P  
Sbjct: 128 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVYMIDHPKA 187

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  + IE+  G ++QI+VTEI
Sbjct: 188 SLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRTEIEELKGGKQQIIVTEI 247

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY+VNKA +++KI ++    ++  I ++RDESDR G R+ IELK+ A +  ILN L +YT
Sbjct: 248 PYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELKKEADSQTILNYLLKYT 307

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K+   KA  R H++ GL 
Sbjct: 308 DLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSKFDKAKAEKRLHIVEGLI 367

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             ++ LDE++ +IR S N   A+ E ++ S++                          SE
Sbjct: 368 RVLSILDEIIALIRSSDNKADAK-ENLKVSYD-------------------------FSE 401

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT      ++NE N L   I     I+   + +  ++K+EL  VK +
Sbjct: 402 EQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRELREVKKK 461

Query: 512 LDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PR + +     +++++    I  E+  V+V+  GY+KR     + A      G+   
Sbjct: 462 FANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLEEVGK--- 518

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             RD+D +  +    T   +L F++LG V    ++R PI         L ++   + GE 
Sbjct: 519 --RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI-------HELTDLRWKDIGEH 564

Query: 630 IT-TIMPFPEDE--------SSWNNLYVVFATKHGNVR---RNKLSDFIQINRSGKIAMK 677
           ++ TI  F  +E        +S++    V  T++G ++   R +LS +          +K
Sbjct: 565 LSQTISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVK 624

Query: 678 L-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           L D +D ++++     E D+LL TK G  +RF    + +  G  S GV+GI+L   D + 
Sbjct: 625 LKDDKDRVVTLSPVIME-DLLLVTKNGYALRFSSQEVPI-QGLKSAGVKGINLKNDDSLA 682

Query: 737 S 737
           S
Sbjct: 683 S 683


>gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis]
          Length = 435

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/458 (47%), Positives = 308/458 (67%), Gaps = 27/458 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
                              SE Q  AILELRL +LTGL
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGL 435


>gi|291519485|emb|CBK74706.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 746

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 262/729 (35%), Positives = 410/729 (56%), Gaps = 30/729 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ S++ Y+++VIL RA+PD+RDGLKPV RR L+ M ++ V++NK Y K ARI G+ MGK
Sbjct: 14  MQKSFIDYSMSVILARAVPDVRDGLKPVQRRTLYDMYELKVDYNKPYKKSARIVGDTMGK 73

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLL 143
           YHPHG+++IY+AL  M+QD+   L L++G GNFGS++GD  AA RYTE RL K A    L
Sbjct: 74  YHPHGDSSIYEALVVMSQDFKKSLPLVDGHGNFGSIEGDGAAAMRYTEARLAKVAQEVYL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ VDF PNYD + +EP VL  R PN+L+NG  GIAVGM T+IP HNLGEVVDG +
Sbjct: 134 GDLDKNVVDFIPNYDETEKEPEVLPVRVPNLLINGSDGIAVGMVTSIPQHNLGEVVDGVI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + NPDI    +M+II GPDFPTG ++  +  +   Y+TG G I IRG + IEK  G +
Sbjct: 194 AYMKNPDISTPEMMQIIPGPDFPTGGIVTNKDDLLEIYSTGLGKIKIRGKAEIEKLKGGK 253

Query: 264 EQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           EQIV+TEIPY +   N    L  I  LV  K+  DI D+ ++S  +  R+++EL++GA A
Sbjct: 254 EQIVITEIPYPMIGANIGKFLNDIYSLVETKKTNDIVDISNQSKGEQMRIIVELRKGADA 313

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             +LN LY+ T L+  F VNM+A+   KPE   ++ I++  V F+ E+  R+  +LL K 
Sbjct: 314 QNVLNLLYKKTRLEDTFGVNMLAVADGKPETLGIVPIIRHHVDFQYELCTRKYNHLLGKE 373

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +++  +  GL  A   +D ++ I+R S + + A+  L+         K        S  +
Sbjct: 374 QEKKEIQEGLIKACDVIDLIIEILRGSKDVKQAKACLVDGITAGIKFK--------SQKS 425

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 ++ +E Q +AIL++RL RL GL  + +R +      +I +   IL SR+ +  +
Sbjct: 426 KADAEQLHFTERQAQAILDMRLHRLIGLEIEALRGDYAETLDKIAKYTKILGSRAEMAKV 485

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I ++L ++K E    RRT I      + +E  I   D+ V +    Y + V +  Y   +
Sbjct: 486 IIKDLQAIKKEYARERRTVIDNVEEAVVEEKPIEVIDVAVLIDRFAYARVVDMPTYERNK 545

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +  S  +         +F  +T   +  F+  G ++  KV  LP G  + +G+    
Sbjct: 546 EAAETESKKI---------VFCKNTD-KICLFTEKGDMHTIKVLSLPFGKFRDKGQP--- 592

Query: 621 ILSLNQGERITTI---MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           I +  +G +I      + F +   +  +  ++F TK   ++    S+F  ++R    A K
Sbjct: 593 IDTAEKGSKIDLTKENLIFADAMENIKDKKLIFGTKQAMIKLVDGSEF-DVSRKTIAATK 651

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+ +DE++ V+     + +++ +     +R     I     + + GVRGI LAKGD++ +
Sbjct: 652 LNDKDEVICVKIINPGDTVVMQSAKDMFLRIEGDTIPE-KKKTAAGVRGIKLAKGDELTN 710

Query: 738 MAIVLHADA 746
           + ++   D+
Sbjct: 711 IYVLAEGDS 719


>gi|255326306|ref|ZP_05367392.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
 gi|255296760|gb|EET76091.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
          Length = 841

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 284/765 (37%), Positives = 421/765 (55%), Gaps = 87/765 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK A
Sbjct: 20  IVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++GEVMGK HPHG+AAIYDA+ R+AQ ++LRL L++G GNFGS+D D PAA RYTE R+
Sbjct: 80  RVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DGPAAARYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 APAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAVGMATNMAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G   +I +P+  L  +M+ I GPD PTG  I+G  GI++AY TGRG+   R    
Sbjct: 199 REVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGIRDAYETGRGTFKTRAKVS 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IE+ S  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VIE+
Sbjct: 259 IEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLTDRTNGLRLVIEI 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L  LY++T L+  F +N VAL   +P+   L+ +++ ++  R  VV RRT+
Sbjct: 319 KNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLDLMRVYIDHRLNVVRRRTE 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K  DR H++ GL +A+ ++DEV++IIR S     AR +L          K + DL 
Sbjct: 379 FRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL----------KVVFDLT 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D                 Q   ILELRL +LT   R ++  E  +L  EI E   IL S 
Sbjct: 429 D----------------TQANHILELRLRQLTKYSRLELEAERETLQQEIAELQRILGSD 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---------VEGL-------------LDMEDEDC 532
           + L  ++ +EL  V +   T RRT++         +E +             L++ D+ C
Sbjct: 473 AALRELVSEELAEVAERYGTDRRTQLKTKDEMQVAIEAVTAQSKTKKSLGLALEIADDPC 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF--IVSTHT--S 588
                  V +S  G + R P         G   R  +V   + F  D+F  IV T     
Sbjct: 533 W------VLLSASGMMGRTP---------GKPIREALVDPGKRFKHDVFTSIVPTTARGE 577

Query: 589 VLFFSSLGFVYKEKVWRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESS 642
           +   +S G + +  V  + +     G+P  A       ++ L +GE++  ++P       
Sbjct: 578 IGAVTSAGRMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPL------ 631

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTK 701
             N  +  AT  G ++R  L+    +N++    MKL   DEI++   C  ++ +L   T+
Sbjct: 632 --NTVLALATAGGVIKR--LNPDYPLNQTEWDIMKLKDGDEIVAAAPCPTDDAVLTFVTR 687

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + + F  + +R   GR   G+ GI LA GD++I++ +    DA
Sbjct: 688 DAKLLTFDAAKVRP-QGRTGGGIAGIKLADGDRLIALGVTAPGDA 731


>gi|254525688|ref|ZP_05137740.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537112|gb|EEE39565.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 813

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/559 (42%), Positives = 353/559 (63%), Gaps = 40/559 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K ITS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + + 
Sbjct: 3   KKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPERPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S +   +EG GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQKFSTKYPTLEGHGNFGSVDNDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L+++G +TV F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHEGFLEEIGSETVSFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VDG VA++ N DI    L  II+GPDFPTG  ++    IK  Y TG+GSI IR
Sbjct: 183 PHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSRSIKELYETGKGSITIR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV +IE     K    +  I++TE+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR 
Sbjct: 243 GVVNIEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP++  L   L  F+ FRE
Sbjct: 303 GMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGKPKQLNLKEYLSYFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E++ +RT Y L    D+  +  GL+ A  N+ +V+ II  S N   AR +L++       
Sbjct: 363 EIIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSVKARSKLIE------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                +LSE Q  ++L++ L +LT L ++ I +E+  L  +   
Sbjct: 416 -------------------NFFLSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKNY 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVS 543
              +L+ R  LL ++ +ELL +K + +  R+T++++ +   E+ + +   + ED +   +
Sbjct: 457 FQKLLNERGILLELLVEELLILKKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKKT 516

Query: 544 HLG-----YVKRVPLSVYR 557
            L      Y+KR+ L  Y+
Sbjct: 517 KLYIDNRLYLKRMILGNYK 535


>gi|167756989|ref|ZP_02429116.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
 gi|167703164|gb|EDS17743.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
          Length = 880

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/726 (37%), Positives = 413/726 (56%), Gaps = 54/726 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G V+G 
Sbjct: 22  MGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTVGNVIGN 81

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA+ R++QDW +R+ L++ QGN GS+D DP AA RYTE RL   A  LL 
Sbjct: 82  YHPHGDTSVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAIAVELLK 141

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP HNL EV+D  + 
Sbjct: 142 DLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEVIDATIH 201

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--EKTSGD 262
            I  P+  L+ LME I+GPDFPTGA++ G+ GI NA+ +GRG +++R  S +  EKT   
Sbjct: 202 RIKYPNCSLEKLMEFIKGPDFPTGAIVEGKQGILNAFKSGRGKVIVRSTSEMIEEKTMN- 260

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV+TEIPY+VNKA ++ KI E+   + I  I ++RDESDR G R+VI+LK+  +   
Sbjct: 261 --KIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLKKDINVQN 318

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            LN LY+ T LQ  ++ NMVA+   +P    +I IL  ++A + +VV R + + LNKA +
Sbjct: 319 TLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRSSIHDLNKANE 378

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H++ GL  A++ LDEVV+ IR S +   A+  L+++                      
Sbjct: 379 RKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYG-------------------- 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                  SE Q  AI+ L+L RLT      + NE   L   I    +IL+S   L  +I 
Sbjct: 419 ------FSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLRKVII 472

Query: 503 QELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
            +L  +K +   PR ++I + +  + ++++  I+ ED+ V+++  GY+KR+         
Sbjct: 473 DQLKGIKKKYPMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRI-------SN 525

Query: 561 RGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           R  K   G+    ++ D++  ++  +T   +L F+  G      V ++     +  GK +
Sbjct: 526 RSIKASEGIPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHV 585

Query: 619 INILSLNQGERIT-TIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKI-- 674
             ++ LN GE+I  TI+        +N  LYV+ ATK+G ++R  L DF ++ R  K   
Sbjct: 586 SYLVKLNAGEKIIGTILV-----KDFNLPLYVMLATKNGQIKRTNLKDF-EVTRYSKPLK 639

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            M L + D ++ V+       I+LTTK G    +    + +  G  + G+R ++L K D+
Sbjct: 640 CMGLKNDDRVVDVKLTDNNQGIILTTKAGYGALYSEQEVSI-VGIKAAGIRAVNL-KNDE 697

Query: 735 VISMAI 740
           ++S+ I
Sbjct: 698 LVSLNI 703



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 113/233 (48%), Gaps = 19/233 (8%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF----AGRNSVGVRGISLAKGDQVIS 737
           D ++S+      + +LL T  G  +  P+  I  F    AG++   +  + L  G+++I 
Sbjct: 542 DYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVSYL--VKLNAGEKIIG 599

Query: 738 MAIVLHADADYDERICYM-KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
             +V     D++  +  M    + Q +  +    E+T         G  +++R  ++KL 
Sbjct: 600 TILV----KDFNLPLYVMLATKNGQIKRTNLKDFEVTRYSKPLKCMGLKNDDRVVDVKLT 655

Query: 797 E--QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +  Q I+  ++ G+G   S  +  I      GIRA ++ K +E+ +L    P+  +  +I
Sbjct: 656 DNNQGIILTTKAGYGALYSEQEVSIVGIKAAGIRAVNL-KNDELVSLNIFNPLVSS-SLI 713

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++S++G + R+ + +I   +RATKG +++   K + +     +++S IVD ++
Sbjct: 714 VISEEGGVKRIKIGDITPCNRATKGTLLYKNPKSKIIY----VKDSVIVDNSQ 762


>gi|256390970|ref|YP_003112534.1| DNA topoisomerase IV subunit A [Catenulispora acidiphila DSM 44928]
 gi|256357196|gb|ACU70693.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 820

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 286/759 (37%), Positives = 419/759 (55%), Gaps = 55/759 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+ E+ I  + + DE+ +SY  YA +VI  RA+PD RDGLKPVHRRILF M  MG+  +
Sbjct: 11  DEDFEERIIDIDVADELSDSYREYAYSVIYSRALPDARDGLKPVHRRILFQMNDMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PPAA 127
           + YVK AR+ G+VMGK HPH + AIYD+L RMAQ W++R+ L++G GNFGS+ GD PPAA
Sbjct: 71  RGYVKSARVVGDVMGKLHPHSDTAIYDSLVRMAQSWAMRIPLVDGHGNFGSLGGDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  + D + +DTV+F PNYDG  QEP VL + +PN+LVNG  GIAVGMA
Sbjct: 131 MRYTEARLSPAAMIMTDSIDEDTVEFGPNYDGQEQEPQVLPSAFPNLLVNGAAGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+  HNLGEVV     +I +P+  LD LM  + GPD PTG  I+G  GI++AY TGRG 
Sbjct: 191 TNMAPHNLGEVVAAARHLIKHPNATLDDLMRFVPGPDLPTGGQIIGEQGIRDAYETGRGV 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             +R  + IEK +  RE IVVTE+P+      ++ K+ ELV+ K++  I DL+D SDR  
Sbjct: 251 FKMRATAKIEKVTARREGIVVTELPFNTGPEKVISKVKELVQAKKLQGITDLKDLSDRFN 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R 
Sbjct: 311 GLKLVIEIKAGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT++   K  DR H++ GL IA+ ++D V+RIIR S +   A+  LM        
Sbjct: 371 EVVRRRTEFRRTKRVDRLHLVEGLLIALVDIDRVIRIIRESDDAAAAKENLM-------- 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LS+ Q   IL+  L RLT     ++ +E + L  EI++
Sbjct: 423 ------------------AALALSDKQATYILDTPLRRLTRFDSLELESERDKLTGEIRD 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVRED-MVVTVSH 544
              IL S + L  ++  EL ++  +  TPRR+ +VEG L + E     + +D +VV +S 
Sbjct: 465 LTAILESDTLLRKVVSDELAAISKQFATPRRSVLVEGALPVFEARPLEISDDPVVVLLSA 524

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G + R      +    G +G++       D V  +   +    V   ++ G + +  V 
Sbjct: 525 TGLLARTASGATKIGSGGERGKN-------DAVASVVTSTIRGEVGAVTTAGRLIRFPVI 577

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-----SSWN--NLYVVFATKHGNV 657
            LP+  P++  KA     SL  G  ++  +   EDE      S N  +  +   T  G V
Sbjct: 578 DLPV-LPESAAKA---APSLAGGAPVSEFVRLEEDERVLCLCSLNPESPGLALGTVQGVV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R  + D+ + NR     + L   D +  + E  T E +++  T   Q +++  S +R  
Sbjct: 634 KR-VVPDYPR-NRDTFEVITLKDGDSLAGATELRTGEEELVFITDDAQLLKYSASLVRP- 690

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            G  + G+ GI+L+    VI    V   D  +D  I  M
Sbjct: 691 QGCPAGGMAGITLSDDASVIFFGAV---DPGHDGLIVSM 726


>gi|228475990|ref|ZP_04060698.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
 gi|228269813|gb|EEK11293.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
          Length = 799

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/725 (36%), Positives = 422/725 (58%), Gaps = 40/725 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  ID+P+I ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 DEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+ +++  + EVV  RT Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVANRTTY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A  R H++ GL  A++ LDEV+ +IR S N + A+  L++                
Sbjct: 365 DLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   I+E  +IL +  
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  ++    T R + I   + +++ D++ IV  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKKELTEIRKRFKTSRLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V +++ D +     V+T  + L F++ G      + ++     + 
Sbjct: 519 RSFNAS-----GVTEVGLKEGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+SL + ERI  +  F E        Y++ AT++G ++++  S F +  R  K
Sbjct: 574 LGQHVSQIVSLEENERIIDV--FNEKTFDGKAFYII-ATRNGMIKKSNQSLF-KTTRFNK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             IA KL + DE+++V   TQE  I + T  G  + +    +    G  + GV+ I+L  
Sbjct: 630 PLIATKLKNEDEVVNVLRITQEQMITVITHKGMSLTYSTEELS-DTGLRAAGVKSINLKD 688

Query: 732 GDQVI 736
            D VI
Sbjct: 689 EDYVI 693



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           SS+E  ISE +  +  +   E+ +L+++  G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 SSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLKEGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI---RIASRATKGVVIFSTAKDERVVS 893
              +L+    VN  D  ++ ++KG  + +P+++I   R          I S  ++ER++ 
Sbjct: 536 ---SLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIID 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|123965239|ref|YP_001010320.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199605|gb|ABM71213.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 813

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 429/755 (56%), Gaps = 67/755 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + KCA
Sbjct: 6   FTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPFRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+AL R+ QD+S +   ++G GNFGSVD DPPAA RYTE RL
Sbjct: 66  RVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTETRL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH   L ++  DTV +  N+DGS +EP +L A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 126 APIAHECFLQEIETDTVSYSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++DG +A+I + DI    L +II GPDFPTG  +L   GIKN Y  GRGSI IRGV 
Sbjct: 186 LGEIIDGLIALIRDKDISDSKLSKIILGPDFPTGGELLYNNGIKNVYLEGRGSITIRGVI 245

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E     K    R  ++++E+PYQ++KA  +EK+AELV   +I  I+D+RDESDR G R
Sbjct: 246 KSEEINLGKGKHKRNALIISELPYQISKAGWIEKLAELVNIGKIDGISDIRDESDRDGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ ++ +++++ LY+ T+LQS F   ++AL   KP + TL   L  F+ FREE +
Sbjct: 306 IVIELKKDSNPEIVISNLYKKTTLQSNFGAILLALVNGKPVQLTLRKYLNYFLEFREETI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RTKY L  A ++  +L G +IA  N                   E++Q S N S+ K 
Sbjct: 366 RKRTKYFLKIASEKLEILEGFSIATKN--------------IKNIIEIIQNSENVSEAKS 411

Query: 430 -LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            LI  +D             LS  Q  A+L + L +LT L +  + NE+N L  + K   
Sbjct: 412 ILIPKLD-------------LSNKQADAVLSMPLKKLTNLEKKQVENEINQLFEKKKYLS 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMV-----V 540
            +L++RS LL  + +EL+ +K + +  R+T+I++ +   E+ D I   + ED++     +
Sbjct: 459 TLLNNRSLLLETLIKELIELKKKFNVKRKTKILKDINQSEELDTINNQILEDLIIKDAKI 518

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++ +  Y K++   +Y   ++     +  +   E+     FI +   S+     +G    
Sbjct: 519 SIDNRFYFKKL---IYYNYKKLLDQENKFI---ENKNVQKFICNIKKSLRI---IGVTSS 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP-----FPEDESSWNNLYVVFATKHG 655
            KV        Q   K++IN +     + +  I P     F + +S+  N Y+      G
Sbjct: 570 GKVL-------QINWKSIINNVYKLDNKILGNINPKEIINFHDLDSNLEN-YICIICSDG 621

Query: 656 NVRRNKL-SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             ++  L  D I+  R   I  KL +  +I+     +QE +I++ T +G+  +F +S   
Sbjct: 622 KFKKVLLDKDMIRSTRIFSIT-KLKNSTKIIDSFIYSQEENIIILTSIGRIFKFNLSNEY 680

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
           +  + + S G+  ++L   +Q++S       D  Y
Sbjct: 681 LKPSSKQSQGILLVNLLPKEQIVSCCKSKEKDLLY 715


>gi|225570592|ref|ZP_03779617.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
 gi|225160605|gb|EEG73224.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
          Length = 746

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 260/724 (35%), Positives = 402/724 (55%), Gaps = 27/724 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y KCA
Sbjct: 6   IIRTEYSDLMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDRPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IYDAL  MAQ++   ++L++G GNFGS++GD  AA RYTE RL
Sbjct: 66  RIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      L DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+IP HN
Sbjct: 126 AKLTQDAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMATSIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD   A + N +I    LM  ++GPDFPTG +++ +  + + Y +G G I IRG  
Sbjct: 186 LGEVVDAVKAYMKNDEISTKQLMRYMKGPDFPTGGIVVNKDDLPDIYESGAGKIKIRGKV 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             E   G ++++VVTEIPY +  A +   L  +  LV  K+  DI D+ ++S ++G R+V
Sbjct: 246 ETEDMKGGKKRLVVTEIPYTMIGAGIGKFLNDVCALVESKKTNDIVDISNQSSKEGIRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+GA A+ + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+  R
Sbjct: 306 IELKKGADAENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKQIIEHHVDFQFELATR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + K LL K  D+  +  GL  A   +D ++ I+R S + + A+  L +        K   
Sbjct: 366 KYKNLLAKELDKKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTKGVTENIKFK--- 422

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                +S +      +  +E Q  AILE+RL +L GL  + ++ E       I    DIL
Sbjct: 423 -----TSISKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHEETLEHIASYEDIL 477

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   +  +I ++L  +K E    RRT +      + +E+ I  +++V  +   GY K V
Sbjct: 478 NNYDSMSEVIMEDLDRIKKEYGRSRRTAVENAEAAVFEENKIEEQEVVFLMDRFGYAKTV 537

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             +VY   +      +  V+                 +  F++ G +++ KV  LP G  
Sbjct: 538 DTAVYERNKEAADAENRYVLS----------CMNTGKICLFTNTGKMHQIKVLDLPYGKF 587

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + +G+ + N+ + +  +     +    D        ++F TK G V++   S+F Q+ + 
Sbjct: 588 RDKGQPIDNVSNYDSTQETIVYLC---DAQQMQIARLLFVTKTGMVKKVDGSEF-QVAKR 643

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A KL   DE++SV+      +I+L T  G  +RFP   +     + ++GVRGI L K
Sbjct: 644 TIAATKLQEEDELISVQVINDSQNIVLQTADGYFLRFPAGEVSE-KKKGAIGVRGIRLHK 702

Query: 732 GDQV 735
            D+V
Sbjct: 703 NDEV 706



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L V++ G  K+    +F+++ R+   I AT   K+ E   L++V  +ND
Sbjct: 611 CDAQQMQIARLLFVTKTGMVKKVDGSEFQVAKRT---IAAT---KLQEEDELISVQVIND 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  I+L +  G  +R P  E+    +   GV
Sbjct: 665 SQNIVLQTADGYFLRFPAGEVSEKKKGAIGV 695


>gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC
           824]
 gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018]
          Length = 954

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 276/752 (36%), Positives = 427/752 (56%), Gaps = 56/752 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + + + M  +YL YA+ V   RA+PD+RDGLKPVHRRI++G   +    +K Y
Sbjct: 9   KDSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++Y+++  +AQ+++ R  LI+G GN+GSVDGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSVDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +++D+ KD VD   NY GS +EP VL A YPN+LVNG  GIAVG++TNIP
Sbjct: 129 EARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAFGIAVGLSTNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  +  IDN D+ ++ LME ++GPD PTG +I+G+  +  AY TG G + +R
Sbjct: 189 PHNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGGIIIGKNSLIAAYETGEGKVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE+    R  IV++E PY+ NKA +L+ I+E+  +K+    +  I+D+RDESDR+G
Sbjct: 249 ARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESISDIRDESDRRG 308

Query: 308 YRVVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ +  D    IL  L++ T LQ   + NMVAL   KPE   L  I+  +V  
Sbjct: 309 IRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALADGKPETMGLKTIIGHYVNH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R+++V RRTK+ LN AR R +++ G   A+  +DE++  IR S + + +   L+ +    
Sbjct: 369 RKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDSENNLVAK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +  Q  AI+EL L +LTGL  +  + E + L   I
Sbjct: 425 ----------------------FGFNNEQATAIVELMLYKLTGLEIETFKKEYDELSKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
           K+   ILS    LL ++K EL  V+ +    RRT IVE      ++ E+  V ED+VVT+
Sbjct: 463 KKLEKILSDEKELLRVVKNELKEVEKKYGEDRRTSIVEDDSEAKIDVEEFTVVEDIVVTM 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYK 600
           S+ GY+K VP   Y    R     S +  R+ DF  + F++ T+T+  +L F+  G +YK
Sbjct: 523 SNDGYIKSVPKKTY---LRSNSDVSDIEYREGDF--NRFLIETNTAHNLLMFTDEGNMYK 577

Query: 601 EKVWRLPIGSPQARGKALINILS-LNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +   +P    + +G+ + N++  ++ G E+I  I      ES      ++F T  G+++
Sbjct: 578 LRGNSIPEYKWKEKGEKIDNLIKGIDLGKEKILNIYSV---ESLTEQKDIIFITDRGSLK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQ--CVRFPISAI 713
           +  L  F  I  S  +A+KL   ++++  E      +E  I ++T+ G    VR P+   
Sbjct: 635 KTSLDKFDTI-YSKIMALKLKKDEKLIKAELVLRTREEGFIKVSTEKGLDFTVREPLIE- 692

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                RN +G + IS+   D+++S   V + D
Sbjct: 693 --EMDRNKMGHQCISVCPMDRIVSSEFVENDD 722


>gi|160878453|ref|YP_001557421.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427119|gb|ABX40682.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 748

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/745 (35%), Positives = 427/745 (57%), Gaps = 42/745 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + I  +  ++EM+ S+  YA++VI+ RAIPD+RDGLKPV RRIL+ M+++G++  K
Sbjct: 2   KKEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+ MGKYHPHG+++IYDAL  M + +S+++ L++G GNFGS+DGD  AA R
Sbjct: 62  PHRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LLD L K  V+F PN+D S +EP VL A  PN+L+NG  GIAVGMATN
Sbjct: 122 YTEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HN  EV++G +A IDNPDI  + LM+ I GPDFPTG  I+    I+N Y TG G + 
Sbjct: 182 MPPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSEDIRNIYETGEGRLK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  + IE +   R+ IV+TEIPY V  NK  ++E + +L+++K   +I D+RDES ++G
Sbjct: 242 VRAKTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIE+K+    + +LN LY+ TS++  + VN++A+   +P  F L  ++  FV+F+EE
Sbjct: 302 IRVVIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFKLKNLVGEFVSFQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  +  ++LL+KA  R  ++ GL  A   +D ++ I+R S + + A+  L+  +    + 
Sbjct: 362 LYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEINF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K        +  +      +  +E Q  AIL + L++L GL    +  E  SL   I++ 
Sbjct: 422 K--------TEASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL ++  L  +IK  L   K + + PR T +    +    E+  V ED+ + +   GY
Sbjct: 474 QSILGNKKELFKVIKSNLKEYKKQFNVPRHTVLANMEIAEYVEEVKV-EDIYILIDKFGY 532

Query: 548 VKRVP-LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            K V   S+ R      K          DFV  + + +T    L F++ G +Y+ K  ++
Sbjct: 533 TKSVDNTSISRVSEDNLK----------DFVHIVKMKNTDRLCL-FTAQGNMYQVKAEKI 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY---VVFATKHGNVRRNKLS 663
           P    + +G  + N+  +++ E +  I        ++ +L+   ++F TK+G ++     
Sbjct: 582 PKCKIKDKGTLIHNLCKVDKEEILLYI--------AFEDLFESQLLFTTKNGFIKLVSGI 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +F + NR+   A KL+  D ++SV           ++ ++L T+    + FP++ +    
Sbjct: 634 EF-ETNRAMISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELK 692

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
            + S GV+GI+L K D+V    + L
Sbjct: 693 -KTSKGVKGITLEKKDKVAFATVAL 716


>gi|329736620|gb|EGG72886.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU045]
          Length = 800

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 269/744 (36%), Positives = 428/744 (57%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR               S N  D KD  +L+ 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIR--------------NSKNKKDAKD--NLVA 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +  +T          E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 409 EYDFT----------EAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESS---------WNNLYVVFATKHGNVRRNKLSD 664
               L +I     G+ I+ I+P  EDE            N  + + ATK+G ++++  S 
Sbjct: 564 --HKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSASQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  I MK+  +DE+++V     +  I + T  G  + +  + +    G  + 
Sbjct: 622 F-KTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV+ I+L   D V+    V  +D+
Sbjct: 680 GVKSINLKDEDYVVMTEDVNDSDS 703



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  E+   ++ +L+ T  G+ +  P+ 
Sbjct: 508 TQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVH 564

Query: 712 AIRVFAGRNSVGVRGISLAKG-DQVISM-----AIVLHADADYDERICYMKHMSAQRRLI 765
            +          +R   L +   Q++ +      + ++ + D+     Y+  M+ +  +I
Sbjct: 565 KL--------ADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYI--MATKNGMI 614

Query: 766 --SGDTEEITSLKNDSSVEGNISE--ERCQELKLK-EQFILTVSEKGFGKRTSSYDFRIS 820
             S  ++  T+  N   +   + +  E    ++L+ +Q I  ++ KG      S  +  +
Sbjct: 615 KKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGM-----SLTYSTN 669

Query: 821 NRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             S  G+RA  V  IN  +   +V    VND+D II+V+ +G + R+  N ++ A RA +
Sbjct: 670 ELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQR 729

Query: 879 GVVIFS--TAKDERVVSVERIRES 900
           G+ +      K  R+V+   ++E+
Sbjct: 730 GITLLKELKKKPHRIVAGAVVKEN 753



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL++++ G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE VV+
Sbjct: 536 ---RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|156888553|gb|ABU96681.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888555|gb|ABU96682.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/738 (36%), Positives = 419/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L ++   + GE ++ TI  F  +E        +S++    +  T++G  +R +  
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQ 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +        ++S K     D++D ++++     E D+LL T  G  +RF    + +  G 
Sbjct: 620 ELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME-DLLLVTYHGYALRFSSQDVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D+++S
Sbjct: 678 KSSGVKGINLKNEDKLVS 695



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V+  G+  R SS D  I      G++  ++   NE   LV+ F V  N   +L + +
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLK--NE-DKLVSTFSVTSNSFFVL-TQR 710

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS--TAKDERV 891
           G+L R+ V++I   SRA +G+++     AK  RV
Sbjct: 711 GSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRV 744


>gi|227535107|ref|ZP_03965156.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187248|gb|EEI67315.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 814

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/734 (37%), Positives = 412/734 (56%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT++
Sbjct: 305 KEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRTRF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 DLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I+ EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 ARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G V    V  +     + 
Sbjct: 519 RSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGSDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL     I++    T  Q+ D+ + ++    + FP+S +     R + GV+ +
Sbjct: 630 SKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPDDEVVNFILV 702


>gi|254391069|ref|ZP_05006277.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|197704764|gb|EDY50576.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 814

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 287/747 (38%), Positives = 413/747 (55%), Gaps = 72/747 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+  ++ YV
Sbjct: 97  EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLRPDRGYV 156

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           KCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA RYT
Sbjct: 157 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 216

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVGMATN+P
Sbjct: 217 ECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVGMATNMP 276

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY TGRG+  IR
Sbjct: 277 PHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYETGRGTFKIR 336

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
             + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR  G R+
Sbjct: 337 ATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDRAHGLRL 396

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R  VV 
Sbjct: 397 VIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRFTVVR 456

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R          
Sbjct: 457 RRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER---------- 506

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQT+ IL+  L RLT   R ++ +E + L  EI     I
Sbjct: 507 ----------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEIAALTRI 550

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDMVVTV 542
           L S + L  ++  EL SV  +  T RRT ++E          L++ D+ C       V +
Sbjct: 551 LESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPC------RVLL 604

Query: 543 SHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           S  G + R     PL     +R              D V      +    +   +S G +
Sbjct: 605 SSTGLLARTVTGDPLPEPGPKR-----------ARHDLVVSSVTATARGDIGAVTSAGRL 653

Query: 599 YKEKVWRLP-----IGSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +  V  LP       +P   G A L   LSL   E +  +     DESS     +   T
Sbjct: 654 LRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTL--DESSQG---LALGT 708

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
             G V+R  + D+   N+       L   D I+   E  T E D++  T   Q +R+P +
Sbjct: 709 LQGVVKR-VVPDY-PANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAA 766

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISM 738
            +R   GR + G+ G+ LA G +V+S 
Sbjct: 767 QVRP-QGRAAGGMAGVKLADGARVLSF 792


>gi|197303042|ref|ZP_03168090.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
 gi|197297897|gb|EDY32449.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
          Length = 748

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/758 (35%), Positives = 418/758 (55%), Gaps = 30/758 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 6   ESQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IYDALA MAQD+    +L++G GNFGS++GD  AA RYTE
Sbjct: 66  KCARIVGDTMGKYHPHGDSSIYDALAVMAQDFKKGQILVDGHGNFGSIEGDGAAAMRYTE 125

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL K+ +DF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+IP
Sbjct: 126 ARLTKFTQEVCLSDLDKNVIDFGPNFDETEKEPVVLPMRVPNLLVNGAEGIAVGMATSIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DG  A + N  +    LM+ I+GPDFPTG +++ +  + N Y TG+G I +R
Sbjct: 186 THNLCEVIDGVKAYMKNDGVTTRQLMKYIKGPDFPTGGIVVNKDDLLNIYETGQGKIKLR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E   G ++Q+V+TEIPY +  A +   L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 246 GKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGI 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 306 RIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKQIIEHHVDFQFEL 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL + R+++ V  GL  A   +D ++ I+R S + + AR  L++        K
Sbjct: 366 ATRKYTTLLEREREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVEGKTENIRFK 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                    S +      +  +E Q  AILE+RL RL GL  + ++ E       I    
Sbjct: 426 --------FSISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEQTLNNIARYE 477

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I +EL S K E    RRT +      + +E  +  +++V  +   GY 
Sbjct: 478 DILNNYDSMAEVIMEELDSYKKEFGRKRRTVVENAEEAVFEEKKVEEQEVVFLMDRFGYA 537

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V ++VY   +      +  ++                 +  F+  G +++ KV  LP 
Sbjct: 538 KTVDMAVYERNKEAADSENKYIVH----------CMNTGKLCIFTDTGKMHQVKVLDLPY 587

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ +    E    +M    ++  +  L  +FAT  G ++R    +F Q+
Sbjct: 588 GKFREKGTPIDNVSNYTSSEE-EIVMICDAEQMRFAKL--LFATAQGMIKRVDGKEF-QV 643

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +   +A KL   D ++SV+   +  +++L T+ G  +RFP + +     + +VGVRGI 
Sbjct: 644 AKRTIVATKLQEDDRLVSVKVVNETQNLVLQTRNGYFLRFPAADVPE-KKKAAVGVRGIR 702

Query: 729 LAKGDQVISMAIV---LHADADYDERICYMKHMSAQRR 763
           L K D++    +          Y E+   +  + A +R
Sbjct: 703 LQKKDELEHTYLFEEGTETKVTYGEKTVTLNRLKAAKR 740


>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 818

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/719 (37%), Positives = 414/719 (57%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K A+  G +MG +HPHG++
Sbjct: 23  YSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKKAAKAVGNIMGNFHPHGDS 82

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 83  SIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTESRLSKISNMLLQDIDKDTV 142

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP HNLGEV+D  + ++ +P+ 
Sbjct: 143 NMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIPPHNLGEVIDATIYLLKHPNA 202

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ LM+ ++GPDFPTGA+I+G  GIK AY TGRG I +R  + I+   G R++IV TEI
Sbjct: 203 TLEDLMKYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRAKTSIQDIRGHRQEIVATEI 262

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNK+ +++KI E+   K I  IA++RDE+DR G  +VIELK+   A  ILN L++ T
Sbjct: 263 PFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDTDAQNILNYLFKNT 322

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++    +VV +RTK+ LNKA  R  ++ GL 
Sbjct: 323 DLQVSYNFNMVAIDHMTPVQVGLKHILISYLEHEVDVVTKRTKFDLNKAEARLEIIQGLI 382

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A++ L+ +                             +E
Sbjct: 383 HAMDILDQVIKTIRASKNKADAKKNLIAK--------------------------YKFTE 416

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    +++  E + L    ++   +LS R  L   I +EL +VK E
Sbjct: 417 KQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKE 476

Query: 512 LDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT+I +    +E DE  +V ++ V V +S  GY+KR  +  Y++      G    
Sbjct: 477 FSNPRRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKRSSIRSYQSTDDADNG---- 532

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST +++  F++ G V    V  L     +  G+ L   + L+  E+
Sbjct: 533 -LPDGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGLDNDEK 591

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEIL 685
           I  +  F  D+ S  N+  + AT  G +++ +L++ +Q  R+ K     A+KL ++D +L
Sbjct: 592 IIRV--FVLDKLSA-NINFLLATNDGYIKQLELAN-LQPTRTYKSRAMTAIKLKNKDSLL 647

Query: 686 -SVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             V+    +   +I L T     +R+ IS I   +G  +VGV+  +L + D +++  +V
Sbjct: 648 VGVDAVKPDAKKEITLFTHRAYAIRYDISEIPT-SGSKAVGVKSANLKEDDYIVNYVLV 705


>gi|325962999|ref|YP_004240905.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469086|gb|ADX72771.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 835

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 290/756 (38%), Positives = 411/756 (54%), Gaps = 72/756 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++ +VK A
Sbjct: 20  IVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 80  RVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 AAAALTLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATNMAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +I NPD  LD LM  + GPD P+G  I+G  GI++AYATGRGS   R    
Sbjct: 199 VEVISAARHLIANPDATLDDLMRFVPGPDLPSGGRIVGLDGIRDAYATGRGSFKTRAKVE 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR+ G R+VIEL
Sbjct: 259 VEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRKHGLRLVIEL 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L  +V  R +VV RRT 
Sbjct: 319 KNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLLTVYVNHRIDVVRRRTV 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM                
Sbjct: 379 FRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARARLM---------------- 422

Query: 435 DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                      ++Y L+E+Q   ILELRL +LT   R ++  E + L  EI E   IL S
Sbjct: 423 -----------SIYDLTEIQANYILELRLRQLTKYSRIELEKEQDELRREIAELEAILGS 471

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL  ++  EL ++ +E  TPRRT     LL+ E     +  D+ +     G  K VPL
Sbjct: 472 EERLRTLVSDELGAIAEEHGTPRRTV----LLESEAVSPTIAADLALAAGKKG--KAVPL 525

Query: 554 S-----------------VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +                 + R   +     +G   +  D  T +   S    +   +S G
Sbjct: 526 ALEIADDPCWAILTASGQIARTSNQEPLAEAGPRTK-HDVFTSVVKTSARGEIAAVTSQG 584

Query: 597 FVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + +V  +P+  P       A G      L+L +GE +    P  E         +  
Sbjct: 585 RMLRLQVMDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFAPLDE--------VLAV 636

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFP 709
            T  G V+R +  D+  +NR     + L  +D ++ V     ++ +++  T   Q ++F 
Sbjct: 637 GTAQGVVKRVQ-PDY-PLNREDWEIISLKDKDFVVGVAPAGADDAELVFLTSQAQLLKFA 694

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +++R   GR + G+ GI LA GD+V+    V   D
Sbjct: 695 AASVRP-QGRTAGGMVGIKLAAGDRVLFFGAVQPKD 729


>gi|322411913|gb|EFY02821.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 819

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/738 (35%), Positives = 416/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A +E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+S  
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIITLQNEENDLRELITTLSAIVSDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +      ++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQTIEIDIASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++ L      
Sbjct: 517 PRSFNASSLEEVGK-----RDDDDLIFVKQAKTTEHLLLFTTLGNVIYRPIYEL----TD 567

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
            R K +        GE ++ TI  F  DE        +S++    +  T++G  +R +  
Sbjct: 568 LRWKDI--------GEHLSQTISNFATDEEILYADIVTSFDQGLYLAVTQNGFTKRFERQ 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +        ++S K     D++D ++++     E D+LL T  G  +RF    + +  G 
Sbjct: 620 ELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME-DLLLVTYYGYALRFSSQDVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+G +L   D+++S
Sbjct: 678 KSSGVKGTNLKNEDKLVS 695


>gi|319401356|gb|EFV89567.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis FRI909]
          Length = 800

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/744 (36%), Positives = 429/744 (57%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR               S N  D KD  +L+ 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIR--------------NSKNKKDAKD--NLVA 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +  +T          E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 409 EYDFT----------EAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL+ +K +    R + I   +  + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELIEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHEAVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ I+ I+P  EDE   N           + + ATK+G ++++  S 
Sbjct: 564 --HKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKHEAFYIMATKNGMIKKSSASQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  I MK+   D++++V     +  I + T  G  + +  + +    G  + 
Sbjct: 622 F-KTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHKGMSLTYSTNELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV+ I+L   D V+    V  +D+
Sbjct: 680 GVKSINLKDEDYVVMTEDVNDSDS 703



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  E    ++ +L+ T  G+ +  P+ 
Sbjct: 508 TQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVH 564

Query: 712 AIRVFAGRNSVGVRGISLAKG-DQVISM-----AIVLHADADYDERICYMKHMSAQRRLI 765
            +          +R   L +   Q++ +      + ++ + D+     Y+  M+ +  +I
Sbjct: 565 KL--------ADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKHEAFYI--MATKNGMI 614

Query: 766 --SGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGFGKRTSSYDFRIS 820
             S  ++  T+  N   +   +  +++    ++L+ +Q I  ++ KG      S  +  +
Sbjct: 615 KKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHKGM-----SLTYSTN 669

Query: 821 NRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             S  G+RA  V  IN  +   +V    VND+D II+V+ +G + R+  N ++ A RA +
Sbjct: 670 ELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQR 729

Query: 879 GVVIFS--TAKDERVVSVERIRES 900
           G+ +      K  R+V+   ++E+
Sbjct: 730 GITLLKELKKKPHRIVAGAVVKEN 753



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL++++ G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE VV+
Sbjct: 536 ---RLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|191638406|ref|YP_001987572.1| DNA topoisomerase IV subunit A [Lactobacillus casei BL23]
 gi|190712708|emb|CAQ66714.1| Topoisomerase IV, subunit A [Lactobacillus casei BL23]
 gi|327382435|gb|AEA53911.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei LC2W]
 gi|327385634|gb|AEA57108.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei BD-II]
          Length = 814

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/734 (37%), Positives = 412/734 (56%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT++
Sbjct: 305 KEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRTRF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 DLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I+ EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 ARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G V    V  +     + 
Sbjct: 519 RSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL     I++    T  Q+ D+ + ++    + FP+S +     R + GV+ +
Sbjct: 630 SKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPDDEVVNFILV 702


>gi|239631505|ref|ZP_04674536.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525970|gb|EEQ64971.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 814

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/734 (37%), Positives = 412/734 (56%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT++
Sbjct: 305 KEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRTRF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 DLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I+ EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 ARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G V    V  +     + 
Sbjct: 519 RSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL     I++    T  Q+ D+ + ++    + FP+S +     R + GV+ +
Sbjct: 630 SKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPDDEVVNFILV 702


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 281/754 (37%), Positives = 417/754 (55%), Gaps = 76/754 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARI 77
           + + +  +  YL +A++VI  RA+PD+RDGLKPV RRIL+ M Q + +  + +Y K A I
Sbjct: 7   IPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKSATI 66

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMGKYHPHG+AAIY+A+ RMAQD+SLR  L++G GNFGS+DGD  AA RYTE RL+ 
Sbjct: 67  VGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEARLRP 126

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL++L + TV  RPN+DG+  EPVVL AR+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 127 LAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHNLGE 186

Query: 198 VVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSH 255
           V+D  + +ID P+  L+ ++E  I+GPDFPTG  +L  R  +   Y TG G I +RG   
Sbjct: 187 VIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRGEYK 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E  +    +IV+T IPY + KA ++EKIAE +   ++  ++D+RDES  +  R+V+EL+
Sbjct: 247 LEGKT----RIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDESTDE-VRIVLELR 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFREEVV 369
           RGA  +  +  L+R+T LQ+ F VN+  L          P +  L+ +L+AF+ FR EVV
Sbjct: 302 RGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRMEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRR +Y L +   R H+L G       LDE +RIIR + +   A + LM R         
Sbjct: 362 VRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L +VQ  AILE +L +L+ L  + IR EL     +  E   
Sbjct: 413 -----------------FQLDDVQADAILETKLYKLSRLEIEAIRQELEEKERQAAELRA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLG 546
           +L+  +   G+I++EL ++K +    RRT I    EG  +   E  IV ED+ V V+  G
Sbjct: 456 LLADEAARWGLIREELKAIKKQFADARRTVIAGPDEG-FEYNQEAYIVDEDVYVIVTRDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +VKR         +R       + +R+ D V  +   ST  +V FF++ G  Y  ++  L
Sbjct: 515 WVKR---------QRSYTDVQSIRVREGDTVGWVLPGSTRATVGFFTNYGRCYTTRIDSL 565

Query: 607 PIGSPQARGKALINILSLNQGERITTIM---------PFPED----------ESSWNNLY 647
           P  S    G  +  +   +  ER+  ++         P PE           E     ++
Sbjct: 566 P--STTGYGDPVQKLFDFSDRERVVGVVVFDERALPRPVPEPEVEPALFENGEQEAPRVH 623

Query: 648 VVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           VV  T+ G   R  +  F + + ++G++ M+L+  DE+L VE    + ++ L ++ G  +
Sbjct: 624 VVAVTRKGQTLRIPIDGFREPSTKNGRLFMRLEKGDEVLGVEVAAGDENVCLASREGYVL 683

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            FP+  I       + GV  + L +GD+V+   +
Sbjct: 684 IFPVHQIPPVKS-AAKGVIAMRLGRGDEVLGFTL 716


>gi|308177798|ref|YP_003917204.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 877

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 279/744 (37%), Positives = 403/744 (54%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +T+EM++S+L YA +VI  RA+PD RDGLKPV RRILF M QMG+   K +VK A
Sbjct: 17  IVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMAQMGLRPEKGHVKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDA+ R+AQD+SLRL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 77  RVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A  +  +L +D V+F PNYD  F +P VL + +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 136 AASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGTTGIAVGMATNMAPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ +P+  ++ LM+ I GPD P+G  + G  GIK+AY TGRG    R    
Sbjct: 196 SEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGGSVTGLDGIKDAYRTGRGLFRTRATVV 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           +EK S  +  +VVTE+PY V    ++EKI + V  K+I  I+D+ D +DR  G ++VIEL
Sbjct: 256 LEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISDVVDLTDRHHGLKLVIEL 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L  LY+YT ++  F +N VAL   +P    L  +L  +V  R +VV RRT 
Sbjct: 316 KNGFNPNAVLASLYKYTPMEDSFGINNVALVNGQPRTMGLRELLTVYVDHRLDVVRRRTT 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K  DR H++ GL IA+ ++D+V+ IIR S     AR  LM                
Sbjct: 376 HRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARERLM---------------- 419

Query: 435 DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                      T++ LSE Q   ILELRL +LT   + ++  E   L  EI+E   IL S
Sbjct: 420 -----------TVFDLSEPQASHILELRLRQLTKYSKLELETEAEQLRKEIEELRAILES 468

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED----------MVVTVS 543
              L  ++  EL  + +   TPRRT++++       +   + E+          M V+ +
Sbjct: 469 DQLLRNLVSDELGQMAETFGTPRRTKLLKSAQLAPLKGTALPEEVGTGKKAKLAMEVSDT 528

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
               +      + R Q R     S   ++  D +T     S    +   ++ G + +  +
Sbjct: 529 PCWVLLSATGQIARTQDRTDLDHSAARIK-HDVLTSQVASSARGEIGALTTTGRIVRISL 587

Query: 604 WRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +P+     G PQ A G  +   L L Q E +  ++P         N  V   TK+G V
Sbjct: 588 IDVPVLPESHGFPQLAHGVPIAEFLKLGQAETVAALVPL--------NQVVAIGTKNGVV 639

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  ++    +NR    A+ L  +D +++       ++++  TK  Q +RF  S +R   
Sbjct: 640 KR--VTPDYPLNRDEFEAITLKDKDVVVAATPAQDADELVFITKHAQLLRFSASVVRA-Q 696

Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741
           GR   G+ GI L   DQVI   +V
Sbjct: 697 GRTGQGMSGIKLGADDQVIFFGVV 720


>gi|156888547|gb|ABU96678.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888549|gb|ABU96679.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888551|gb|ABU96680.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/737 (36%), Positives = 419/737 (56%), Gaps = 60/737 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A
Sbjct: 4   IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 64  KSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  + 
Sbjct: 184 SEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRTE 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IELK
Sbjct: 244 IEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELK 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K+
Sbjct: 304 KEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSKF 363

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++            
Sbjct: 364 DKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAK-ENLKVSYD------------ 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++NE N L   I     I+   +
Sbjct: 411 -------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEA 457

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR   
Sbjct: 458 TMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSP 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F++LG V    ++R PI     
Sbjct: 518 RSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI----- 562

Query: 614 RGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLSD 664
               L ++   + GE ++ TI  F  +E        +S++    +  T++G  +R +  +
Sbjct: 563 --HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQE 620

Query: 665 FIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   ++S K     D++D ++++     E D+LL T  G  +RF    + +  G  
Sbjct: 621 LTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME-DLLLVTYHGYALRFSSQDVPI-QGLK 678

Query: 721 SVGVRGISLAKGDQVIS 737
           S GV+GI+L   D+++S
Sbjct: 679 SSGVKGINLKNEDKLVS 695



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V+  G+  R SS D  I      G++  ++   NE   LV+ F V  N   +L + +
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLK--NE-DKLVSAFSVTSNSFFVL-TQR 710

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS--TAKDERV 891
           G+L R+ V++I   SRA +G+++     AK  RV
Sbjct: 711 GSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRV 744


>gi|301066455|ref|YP_003788478.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
 gi|300438862|gb|ADK18628.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
          Length = 814

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 277/734 (37%), Positives = 412/734 (56%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT++
Sbjct: 305 KEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRTRF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 DLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E   L   I E  D+L+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDVLARPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I+ EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 ARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G V    V  +     + 
Sbjct: 519 RSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL     I++    T  Q+ D+ + ++    + FP+S +     R + GV+ +
Sbjct: 630 SKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPDDEVVNFILV 702


>gi|314933533|ref|ZP_07840898.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
 gi|313653683|gb|EFS17440.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
          Length = 800

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/744 (35%), Positives = 424/744 (56%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQGIDGIKKAYESGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + +E   L   IKE  +IL    
Sbjct: 408 ---------AEFDFTEAQAEAIVMLQLYRLTNTDIVALEDEHAELEALIKELRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++VSH GY+KR   
Sbjct: 459 ALLSVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSW---------NNLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE            NN + V ATK+G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIDEDEQVVDVYNEKDFNNNAFYVMATKNGMIKKSSVPQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  + MK+   DEI++V     +  + + T  G  + +    +    G  + 
Sbjct: 622 F-KTTRFNKPLVGMKVKDHDEIVNVIRLESDQLVTVLTHKGMSLTYSTDELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G++ I+L   D V+    V  +D+
Sbjct: 680 GIKSINLKDEDHVVMTESVSDSDS 703



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 51/273 (18%), Positives = 123/273 (45%), Gaps = 31/273 (11%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  + HG ++R     F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSVSHHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVF----AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            P+  +        G++   +  + + + +QV+     ++ + D++    Y+  M+ +  
Sbjct: 561 IPVHKLADIRWKELGQHVSQI--VPIDEDEQVVD----VYNEKDFNNNAFYV--MATKNG 612

Query: 764 LISGDT-EEITSLKNDSSVEG---NISEERCQELKLK-EQFILTVSEKGFGKRTSSYDFR 818
           +I   +  +  + + +  + G      +E    ++L+ +Q +  ++ KG      S  + 
Sbjct: 613 MIKKSSVPQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQLVTVLTHKGM-----SLTYS 667

Query: 819 ISNRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
               S  G+RA  +  IN  +   +V    V+D+D I++++ +G + R+    +++A RA
Sbjct: 668 TDELSDTGLRAAGIKSINLKDEDHVVMTESVSDSDSILMITQRGAIKRISYKVLQVAKRA 727

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            +G+ +    K     +  RI ++ +V E + T
Sbjct: 728 QRGITLLKELKK----NPHRIVDAAVVKEGQQT 756



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL+VS  G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE+VV 
Sbjct: 536 ---RLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|256825410|ref|YP_003149370.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
 gi|256688803|gb|ACV06605.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
          Length = 823

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 283/749 (37%), Positives = 410/749 (54%), Gaps = 54/749 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + +EM +++L YA +VI  RA+PD RDGLKPV RRILFGM ++G+  ++ YVK +
Sbjct: 18  VIDIDVEEEMSSAFLEYAYSVIYSRALPDARDGLKPVQRRILFGMDELGLRPDRGYVKSS 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGKYHPHG+ AIYDAL R+AQ +S+R+ L++G GNFGS+D D PAA RYTE R+
Sbjct: 78  RVVGEVMGKYHPHGDTAIYDALVRLAQPFSMRVPLVDGHGNFGSLD-DGPAASRYTEARM 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +   L +DTVD  PNYD    +P VL A YPN+LVNG  GIAVGMATNI  HN+
Sbjct: 137 APAALLMTQTLDEDTVDMVPNYDDQLLQPEVLPAAYPNLLVNGASGIAVGMATNIAPHNM 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     ++DNP   ++ LM  + GPD P G  I+G  GI++AY TGRGS   R    
Sbjct: 197 GEVIAAARHLLDNPGATVEDLMRFVPGPDLPGGGRIVGLDGIRDAYRTGRGSFRTRATVR 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IE  +  R+ IVVTE+PY V    ++ K+   V+ K++  IAD++D +DR +G ++VIE+
Sbjct: 257 IENVTPRRKGIVVTELPYLVGPEKVIAKLKTQVQAKKLQGIADVKDLTDRHKGLQLVIEV 316

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLY+ T ++  F +N VAL   +P    L  +L  +V FR EVV RRT+
Sbjct: 317 KNGFNPEAVLAQLYKQTPMEESFGINNVALVDGQPRTLGLRELLAVYVDFRCEVVRRRTE 376

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K ++R H++ GL +A+ ++DEV+++IR S +   AR  LMQ               
Sbjct: 377 FRLRKRQERLHLVEGLLLAILDIDEVIQLIRSSDDTAEARTRLMQ--------------- 421

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q   ILEL+L RLT   R ++  E + L   I+E   IL+  
Sbjct: 422 -----------VFDLSELQANYILELQLRRLTKFSRIELETERDDLLRAIEELQAILADE 470

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC----IVREDMVVTVSHLGYVKR 550
           + L  ++  EL +V  E  TPRRT ++E              +  + + V +S  G V R
Sbjct: 471 ALLRRVVSDELAAVAKEHATPRRTVLLESEAAAAMTPAAPLEVADDPVTVVLSATGLVAR 530

Query: 551 VP-----LSVYRAQ--RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           VP      SV      R  G GR      D D +  +   +   +V   +S G + +  V
Sbjct: 531 VPRGEDTPSVLSRDDVRAAGAGRV-----DHDALASVVASTARGTVGLVTSTGRLVRLSV 585

Query: 604 WRLPI--GSP---QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
             LP   GS     A G  L     L  GER   ++     E + ++  +  AT  G V+
Sbjct: 586 VDLPALPGSDALGMAGGAPLAAFTELAGGERPLALVRV---EGAEDSPGLALATAGGVVK 642

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +  D+     S ++    D  + + +VE  T E D++  T     + +  S +R   G
Sbjct: 643 RVR-PDYPGGKDSFEVITLADGDELVGAVELATGEEDLVFVTDAAALLTYSASLVRP-QG 700

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADAD 747
           R+  GV GI + +G +V+  A V  A  D
Sbjct: 701 RSGSGVAGIKVPEGQRVLGFAAVPAASED 729


>gi|300361707|ref|ZP_07057884.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300354326|gb|EFJ70197.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 826

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 267/726 (36%), Positives = 411/726 (56%), Gaps = 48/726 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G VMG +HPHG++
Sbjct: 24  YSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKKAAKAVGNVMGNFHPHGDS 83

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL K ++ LL D+ K+TV
Sbjct: 84  SIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTESRLSKISNLLLQDIDKETV 143

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL EV+D  V ++ +PD 
Sbjct: 144 QMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNLAEVIDAAVYLLKHPDA 203

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             D LME ++GPDFPTG ++LG  GIK AY TGRG I +R  + I+   G R+QIVVTE+
Sbjct: 204 TTDDLMEFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSKTTIQDIKGHRQQIVVTEV 263

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIELK+GA +  ILN L++ T
Sbjct: 264 PFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELKKGADSQNILNYLFKNT 323

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++  +++VV +RT++ L KA+ R  ++ GL 
Sbjct: 324 DLQVSYNFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVTKRTEFDLKKAKQRLEIVEGLI 383

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S + + A+  L+ +                             + 
Sbjct: 384 HALDILDQVIKTIRSSKDKKNAKNNLIAK--------------------------YKFTP 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    + ++ E   L  +I +  +ILS    L  ++ +EL +VK E
Sbjct: 418 NQAEAIVSLQLYRLTNTDVNQLKKEQTELNKKIDKFNEILSDNKVLEKVVVKELNAVKKE 477

Query: 512 LDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT I      +++ ++  +  ED+ V VS  GY+KR  +  +++      G    
Sbjct: 478 FGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST  ++  F++ G +    V  L     +  G+ L   + L+  E 
Sbjct: 534 -LPDGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDNDEE 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRD-EI 684
           I  +    + ++S N L    AT  G +++  L+D +Q  R+ K     A+KL  +D ++
Sbjct: 593 IIRVFEINDLKASLNFL---IATNDGYIKQVTLAD-LQPTRTYKSRAITAIKLKCKDSKV 648

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + ++    ++  +I L T     VRF IS I   +G  +VGV+ ++L   D +++  +  
Sbjct: 649 VRIDQVKPDSKQEITLITNQAYAVRFDISEIPT-SGSKAVGVKSVNLKDNDYIVNYVL-- 705

Query: 743 HADADY 748
            AD  Y
Sbjct: 706 -ADPKY 710


>gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis]
          Length = 434

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/457 (47%), Positives = 307/457 (67%), Gaps = 27/457 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ S   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                              SE Q  AILELRL +LTG
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTG 434


>gi|283768326|ref|ZP_06341238.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
 gi|283104718|gb|EFC06090.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
          Length = 830

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/730 (36%), Positives = 417/730 (57%), Gaps = 44/730 (6%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  YA  +I  RA+PD+RDGLKPV RRIL+ M   G   +K Y K A+  G 
Sbjct: 18  LEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGL 77

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG++++YDA+ RM+QDW +R+  I+  GN GS+D DP AA RYTE RL K   
Sbjct: 78  VIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + +DL KDTV+  PN+D +  EP VL   +P +LVNG  GIA G ATN+P HN+ EV+D
Sbjct: 138 VMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVID 197

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +  I N +  L+ +M+I+ GPDFPTG ++ G  GI+ A+ TG+G IV+R  + I +  
Sbjct: 198 ATIYRIQNAECSLNDVMDILPGPDFPTGGIVQGEEGIREAFTTGKGRIVVRAKTEIIQEK 257

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            + +QIV+TEIPY+V K  +++K+ E+   + +  + D+RDESDR G R+VI++++   A
Sbjct: 258 -NLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRKDVDA 316

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           ++IL   ++ T LQ  ++ N VA+   +P +  L+G+L AF+ FR+EVV+RR+++ LNK 
Sbjct: 317 NLILQYFFKNTDLQVYYNYNNVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFELNKM 376

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL  AV+ LDEV+ IIR S +   A+  L++                     
Sbjct: 377 EARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIE--------------------N 416

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            G D      EVQ  AI+ LRL RL+      +RNE   L  +I+E   IL + S L  +
Sbjct: 417 FGFD------EVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHL 470

Query: 501 IKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           + QEL  VK+     RRT+I   +  +++  E  I  E +++TVS  GY+KRV L  + A
Sbjct: 471 MVQELRQVKENYGDARRTKIEAKIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNA 530

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R    G     ++  D +     V+T  ++L F+S G      VW++     +  G  L
Sbjct: 531 VRDQETG-----LKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHL 585

Query: 619 INILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI--A 675
             ++ ++  E+ I+ I+    D  +W    +   TK   +++ KLSD+ ++ R+ ++  A
Sbjct: 586 NKLVRVDSEEKVISAIVVKNFDSYAW----ITLVTKGNKIKKTKLSDW-KVERTSRLFKA 640

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+ +DE+ +     Q  ++L+ TK G  +R  +S  ++   + S GV+ + +A  D+V
Sbjct: 641 INLEEKDEVCAAFMTYQSQEVLVVTKDGYALR--MSQDQIPEVKASKGVQAMKVAFEDEV 698

Query: 736 ISMAIVLHAD 745
                V  +D
Sbjct: 699 AFATSVYSSD 708


>gi|199599526|ref|ZP_03212914.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|258508415|ref|YP_003171166.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
 gi|199589567|gb|EDY97685.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|257148342|emb|CAR87315.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus GG]
 gi|259649729|dbj|BAI41891.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
          Length = 813

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 277/734 (37%), Positives = 414/734 (56%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV +  + ++ +P  DL  LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVFNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+VA R +VV RRT+Y
Sbjct: 305 KEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTRRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA+ R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 ELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQ--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      +++E   L   I E  DIL+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I++EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 SRDRVIEKELKRIAKEYGDDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G +    V+ +     + 
Sbjct: 519 RSYQAVDPEDNG-----LKPNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F  D+      +V+  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGTDEKVLAVFAF--DQLDLAGTFVL-GSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL +   +++    T  Q  D+ + ++    + FP+  +     R + GV+ +
Sbjct: 630 RKPMMAMKLKTPGAVVTNAYFTTDQAQDVFVVSRHAYGLDFPLDEVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPEDEVVNFILV 702


>gi|242242635|ref|ZP_04797080.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
 gi|242233771|gb|EES36083.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
          Length = 800

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 268/744 (36%), Positives = 428/744 (57%), Gaps = 58/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR               S N  D KD  +L+ 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIR--------------NSKNKKDAKD--NLVA 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +  +T          E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 409 EYDFT----------EAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHEAVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESS---------WNNLYVVFATKHGNVRRNKLSD 664
               L +I     G+ I+ I+P  EDE            N  + + ATK+G ++++  S 
Sbjct: 564 --HKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSASQ 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  I MK+   D++++V     +  I + T  G  + +  + +    G  + 
Sbjct: 622 F-KTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHKGMSLTYSTNELS-DTGLRAA 679

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV+ I+L   D V+    V  +D+
Sbjct: 680 GVKSINLKDEDYVVMTEDVNDSDS 703



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  E    ++ +L+ T  G+ +  P+ 
Sbjct: 508 TQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVH 564

Query: 712 AIRVFAGRNSVGVRGISLAKG-DQVISM-----AIVLHADADYDERICYMKHMSAQRRLI 765
            +          +R   L +   Q++ +      + ++ + D+     Y+  M+ +  +I
Sbjct: 565 KL--------ADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYI--MATKNGMI 614

Query: 766 --SGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGFGKRTSSYDFRIS 820
             S  ++  T+  N   +   +  +++    ++L+ +Q I  ++ KG      S  +  +
Sbjct: 615 KKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHKGM-----SLTYSTN 669

Query: 821 NRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             S  G+RA  V  IN  +   +V    VND+D II+V+ +G + R+  N ++ A RA +
Sbjct: 670 ELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQR 729

Query: 879 GVVIFS--TAKDERVVSVERIRES 900
           G+ +      K  R+V+   ++E+
Sbjct: 730 GITLLKELKKKPHRIVAGAVVKEN 753



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL++++ G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE VV+
Sbjct: 536 ---RLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|116494895|ref|YP_806629.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
 gi|116105045|gb|ABJ70187.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
          Length = 814

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 278/734 (37%), Positives = 411/734 (55%), Gaps = 44/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K A
Sbjct: 5   IQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE RL
Sbjct: 65  KSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 125 SKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  +H
Sbjct: 185 REVIAAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSRTH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIELK
Sbjct: 245 IETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT++
Sbjct: 305 KEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRTRF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++               
Sbjct: 365 DLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+  +
Sbjct: 410 -----------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILARPA 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               +I+ EL  +  E    RR+ I   +  L++     +  E ++V VS  GYVKR  L
Sbjct: 459 ARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRSSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+A      G     ++  D       +ST   +   ++ G V    V  +     + 
Sbjct: 519 RSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD +Q  R+ K
Sbjct: 574 TGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSD-LQPQRTYK 629

Query: 674 ----IAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +AMKL     I++    T  Q+ D+ + ++    + FP+S +     R + GV+ +
Sbjct: 630 SKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKSM 688

Query: 728 SLAKGDQVISMAIV 741
            L   D+V++  +V
Sbjct: 689 DLKPDDEVVNFILV 702


>gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 800

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 287/750 (38%), Positives = 415/750 (55%), Gaps = 69/750 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARIS 78
           S+ DE Q  YL YA++VI  RA+PD+RDGLKPV RRIL+ M+  + +  + KY K A + 
Sbjct: 37  SLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAAVV 96

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+ AIYDA+ R+AQD+ +R  LI G GNFGSVDGD PAA RYTE +L+  
Sbjct: 97  GDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLRPL 156

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +LG+ TVDFRPNYDG+  EP+VL +R+PN+LVNG  GIAVGMAT+IP HNLGEV
Sbjct: 157 ALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLGEV 216

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIE 257
           +D CVA+I+N ++    L+  ++GPDFPTG  +   +  ++  Y  G+GS+ +RG   +E
Sbjct: 217 IDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQLE 276

Query: 258 KTSGDR---EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +  G R    QIV+T IPY + + A++EKIAE++  K++  + D+RDES  +  R+V+EL
Sbjct: 277 EGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGE-VRIVMEL 335

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL----NG--YKPERFTLIGILKAFVAFREEV 368
           KRGA A +++  LY+ T L     VN+  L    N     P R  L  IL  F+ FR   
Sbjct: 336 KRGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRYAT 395

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L + R R  +L G       LDEV+RIIR S     A  +LM+R        
Sbjct: 396 VTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKR-------- 447

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E QT AILEL+L RL  L    ++ +L     E K   
Sbjct: 448 ------------------FTLNEEQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIE 489

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHL 545
            +L S ++  GI++ EL+ +K      RRT++V G +D    + ED IV ED  V +S  
Sbjct: 490 GLLRSDAKRWGIVRDELVEIKGSYGEKRRTKVV-GSIDEPEYQAEDFIVAEDANVILSAQ 548

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+VKRV         R  K  +   +R+ D V      ST ++V FFS+LG  Y  ++  
Sbjct: 549 GWVKRV---------REVKDLASTRIREGDSVLAAVAGSTRSTVAFFSNLGACYVCRIHD 599

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPF----------PEDESSWNNLYVVFATKHG 655
           +P  +    G  +  +  L  GER+  +M F            D +     + +  T+ G
Sbjct: 600 VPQST--GYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPPFALAITRGG 657

Query: 656 NVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
              R  L      + RSG+   KL+  DE+L V      + +L  +     +   +  + 
Sbjct: 658 LGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVHAVDGADRVLCASSDAWALSVAVEELA 717

Query: 715 VFA--GRNSVGVRGISLAKGDQVISMAIVL 742
           + +  G+ SV +R   +A+G++++  A+ L
Sbjct: 718 LLSGPGKGSVVMR---VAEGERLVGAALAL 744


>gi|251782579|ref|YP_002996882.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391209|dbj|BAH81668.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 819

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 265/738 (35%), Positives = 420/738 (56%), Gaps = 60/738 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LSEVIDAVVYMIDHPKARLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K
Sbjct: 303 KKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDE++ +IR S N   A+ E ++ S++           
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAK-ENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      ++NE N L   I     I+   
Sbjct: 411 --------------FSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F++LG V    ++R PI    
Sbjct: 517 PRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNV----IYR-PI---- 562

Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDE--------SSWNNLYVVFATKHGNVRRNKLS 663
                L ++   + GE ++ TI  F  +E        +S++    +  T++G  +R +  
Sbjct: 563 ---HELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQ 619

Query: 664 DFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +        ++S K     D++D ++++     E D+LL T  G  +RF    + +  G 
Sbjct: 620 ELTPWRTYKSKSTKYVKLKDAKDRVVTLTPIVME-DLLLVTYHGYALRFSSQDVPI-QGL 677

Query: 720 NSVGVRGISLAKGDQVIS 737
            S GV+GI+L   D+++S
Sbjct: 678 KSSGVKGINLKNEDKLVS 695



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V+  G+  R SS D  I      G++  ++   NE   LV+ F V  N   +L + +
Sbjct: 655 LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLK--NE-DKLVSAFSVTSNSFFVL-TQR 710

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS--TAKDERV 891
           G+L R+ V++I   SRA +G+++     AK  RV
Sbjct: 711 GSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRV 744


>gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 816

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 291/752 (38%), Positives = 414/752 (55%), Gaps = 76/752 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRIL+   +MG+   + +V
Sbjct: 15  EERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEMGLRPERGHV 74

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           KCAR+ GEVMG+ HPHG+A+IYDA+ R+AQ +S+RL LI+G GNFGS+ + DPPAA RYT
Sbjct: 75  KCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGNDDPPAAMRYT 134

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  +++ + +DTVDF PNYDGS QEP VL + +PN+LVNG  GIAVGMATN+P
Sbjct: 135 ESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGIAVGMATNMP 194

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV     +I +P  DL+ LM  + GPD PTG  I+G +GI++AY +GRG+  IR
Sbjct: 195 PHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGGRIVGLSGIRDAYESGRGTFKIR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRV 310
             + IE  +  R+ IVVTE+PY V    ++ KI +LV  K++  IAD++D +DR+ G R+
Sbjct: 255 ATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKDLTDREHGLRL 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +V  R  VV 
Sbjct: 315 VIEVKNGFVPEALLEQLYKLTPMEETFGINNVALVDGQPLTLGLKELLEVYVDHRFTVVK 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   K +DR H++ GL +A+ ++DEV+ +IR S +   A+  LM+R          
Sbjct: 375 RRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLMER---------- 424

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE QT  IL+  L RLT   R ++  E + L  EI E  +I
Sbjct: 425 ----------------FGLSETQTAYILDTPLRRLTRFDRVELEAEQSKLLKEIAELTEI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG----------LLDMEDEDCIVREDMVV 540
           L S  +L  ++  EL SV  +  T RRT ++E            L++ D+ C       V
Sbjct: 469 LESDHKLRSVVSSELGSVAKQFGTERRTVLLEAGSVPSAALAVPLEVADDPC------RV 522

Query: 541 TVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S  G + R     P++   A R              D +      +    V   ++ G
Sbjct: 523 LLSSTGLLARTFDLKPVTEESAAR-----------AKHDVLASAVPATARGDVGLVTTAG 571

Query: 597 FVYKEKVWRLPIGSPQ----ARGKALINILSLNQGER---ITTIMPFPEDESSWNNLYVV 649
            V +  V  LP   P     + G A+   L L  GER   +TT+     DESS     + 
Sbjct: 572 RVLRLPVIDLPALPPGTAALSGGAAVSEFLRLEDGERPIALTTL-----DESSPG---LA 623

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T  G V+R         +    IA+K D    + +VE  T E D++  T   Q +R+ 
Sbjct: 624 LGTVQGVVKRVVPEWPANKDEFEVIALK-DGDAVVGAVELRTGEEDLVFITSDAQLLRYQ 682

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            + +R   GR + G+ GI LA G +V+S   V
Sbjct: 683 ANQVRP-QGRPAGGMAGIKLADGARVLSFGAV 713


>gi|116629642|ref|YP_814814.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238854273|ref|ZP_04644617.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282851153|ref|ZP_06260520.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311110715|ref|ZP_07712112.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
 gi|116095224|gb|ABJ60376.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238833084|gb|EEQ25377.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282557685|gb|EFB63280.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311065869|gb|EFQ46209.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
          Length = 826

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/726 (36%), Positives = 412/726 (56%), Gaps = 48/726 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G VMG +HPHG++
Sbjct: 24  YSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKKAAKAVGNVMGNFHPHGDS 83

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL K ++ LL D+ K+TV
Sbjct: 84  SIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTESRLSKISNLLLQDIDKETV 143

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL EV+D  V ++ +PD 
Sbjct: 144 QMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNLAEVIDAAVYLLKHPDA 203

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             D LME ++GPDFPTG ++LG  GIK AY TGRG I +R  + I+   G R+QIVVTE+
Sbjct: 204 TTDDLMEFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSKTTIQDIKGHRQQIVVTEV 263

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIELK+GA +  ILN L++ T
Sbjct: 264 PFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELKKGADSQNILNYLFKNT 323

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++  +++VV +RT++ L KA+ R  ++ GL 
Sbjct: 324 DLQVSYNFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVTKRTEFDLKKAKQRLEIVEGLI 383

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S + + A+  L+ +                             + 
Sbjct: 384 HALDILDQVIKTIRSSKDKKDAKNNLIAK--------------------------YEFTP 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    + ++ E   L  +I +  +ILS    L  ++ +EL +VK E
Sbjct: 418 NQAEAIVSLQLYRLTNTDVNQLKQEQTELNKKIDKFNEILSDNQVLEKVVVKELNAVKKE 477

Query: 512 LDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRRT I      +++ ++  +  ED+ V VS  GY+KR  +  +++      G    
Sbjct: 478 FGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTSDNG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST  ++  F++ G +    V  L     +  G+ L   + L+  E 
Sbjct: 534 -LPDGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEE 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRD-EI 684
           I  +    + ++   NL  + AT  G +++  L+D +Q  R+ K     A+KL S++ ++
Sbjct: 593 IIRVFEINDLKA---NLNFLIATNDGYIKQVTLAD-LQPTRTYKSRAITAIKLKSKESKV 648

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + ++    ++  +I L T     VRF IS I   +G  +VGV+ ++L   D +++  +  
Sbjct: 649 VRIDQVKPDSKQEITLITNQAYAVRFDISEIPT-SGSKAVGVKSVNLKDNDYIVNYVL-- 705

Query: 743 HADADY 748
            AD  Y
Sbjct: 706 -ADPKY 710


>gi|157412343|ref|YP_001483209.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386918|gb|ABV49623.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 813

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/474 (46%), Positives = 312/474 (65%), Gaps = 32/474 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K ITS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + 
Sbjct: 3   KKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDRPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S +   +EG GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLEGHGNFGSVDNDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L+++G +TV F  N+DGS +EP +L A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHKGFLEEIGSETVSFSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VDG VA++ N DI    L  II+GPDFPTG  ++    IK  Y TG+GSI IR
Sbjct: 183 PHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSHAIKELYETGKGSITIR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV ++E     K    +  I++TE+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR 
Sbjct: 243 GVVNMEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP++  L   L  F+ FRE
Sbjct: 303 GMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGKPKQLNLKEYLNYFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + +RT Y L    D+  +  GL+ A  N+ +V+ II  S N E AR +L++       
Sbjct: 363 ETIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSEKARSKLIE------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                +LSE Q  ++L++ L +LT L ++ I +E+  L
Sbjct: 416 -------------------NFFLSEKQANSVLDMPLKKLTNLEKNKIDDEIKHL 450


>gi|210612463|ref|ZP_03289321.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
 gi|210151571|gb|EEA82578.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
          Length = 744

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/726 (36%), Positives = 412/726 (56%), Gaps = 31/726 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y KCA
Sbjct: 6   IIRTEYSDIMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYTE RL
Sbjct: 66  RIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYTEARL 125

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      L DL K  VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IPTHN
Sbjct: 126 AKLTQEVFLADLDKGVVDFAPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIPTHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D   A + N +I    LM+ I+GPDFPTG +++ +  + N Y TG G I IRG  
Sbjct: 186 LGEVIDAVKAYMKNSEITTKQLMKHIKGPDFPTGGIVVNKDDLLNIYETGSGKIKIRGKV 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +E+  G ++++V++EIPY +  A +   L  +A LV  K+  DI D+ ++S ++G R+V
Sbjct: 246 EVEELKGGKKRLVISEIPYTMIGAGIGKFLNDVASLVESKKTNDITDISNQSSKEGIRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +EL++ A  + + N LY+ T L+  F VNM+A+   KPE   L  I++  V F+ +V  R
Sbjct: 306 LELRKDADVENLKNMLYKKTRLEDTFGVNMLAVANGKPETMGLKSIIEHHVDFQFDVATR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + K LL K  D+  +  GL  A   +D ++ I+R S + + A+  L         I + I
Sbjct: 366 KYKTLLAKELDKKEIQEGLIKACNVIDLIIEILRGSKSIKEAKACL------TDGITENI 419

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
               + S  + S   +  +E Q  AILE+RL +L GL  + ++ E       I    DIL
Sbjct: 420 KFKSNISKKMAS--MLRFTERQATAILEMRLYKLIGLEIEALQAEYEQTLKSIARYEDIL 477

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   +  +I ++L ++K      RRT +      + +E  I  +++V  +   GY + V
Sbjct: 478 NNYDSMAEVIIEDLDAIKKTYARKRRTIVENAEEAVFEEKKIEEQEVVFLMDRFGYARTV 537

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIG 609
            +S Y   R      +             +IVS   +  +  F++ G +++ KV  +P G
Sbjct: 538 DVSTYERNREAADSENK------------YIVSCLNTGKICLFTNAGKMHQVKVPDIPYG 585

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  + N+ + N  E     + F  DE S +   ++FATK G +++   S+F Q+ 
Sbjct: 586 KFRDKGTPIDNLSNYNSTEE---QIVFVCDEGSLSMAKLLFATKQGMLKQVDGSEF-QVA 641

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +    A KL   DE++ V+  T+   I+L T  G  +RF  + +     + +VGVRGI L
Sbjct: 642 KRTIAATKLLEEDEVICVQVVTEGQSIVLQTMNGYFLRFASTEVPE-KKKGAVGVRGIKL 700

Query: 730 AKGDQV 735
            K D++
Sbjct: 701 QKKDEL 706


>gi|297626461|ref|YP_003688224.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922226|emb|CBL56796.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 820

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 288/767 (37%), Positives = 420/767 (54%), Gaps = 81/767 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +D+ EE+ I  V ++ EMQ SYL YA +VI  RA+PD RDGLKPV RRIL+GM +  + 
Sbjct: 8   PADDFEER-IVDVDVSSEMQTSYLEYAYSVIYARALPDARDGLKPVQRRILYGMSEQRLT 66

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +  +VKCAR+ G+VMGK HPHG++AIYDAL RM QDWS+RL L++G GNFGS+D  P A
Sbjct: 67  PDHPFVKCARVVGDVMGKLHPHGDSAIYDALVRMGQDWSMRLKLVDGHGNFGSLDAGP-A 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL  AA  +LD L +DTVDFRPNYDG   EP VL A +PN+LVNG  GIAVGM
Sbjct: 126 AMRYTECRLAPAAMPMLDGLHEDTVDFRPNYDGKQLEPAVLPAAFPNLLVNGATGIAVGM 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP+HNLGEVV     ++ NP  ++D LM  + GPD PTG  I+G  GI+ AYATGRG
Sbjct: 186 ATNIPSHNLGEVVAALKYLLKNPGAEVDELMRYVPGPDLPTGGKIVGLDGIRAAYATGRG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
               R  + IE+ S  R  IV+TE+P+ V    ++++I  LVR K+I  I+D++D +D  
Sbjct: 246 IFRTRATARIEQVSPRRRGIVITELPFAVGPEKIIDQIKVLVRSKKITGISDVKDLTDLT 305

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G + + +L QLY++T L+  F +N VAL   +P   TL  +L+ ++  R
Sbjct: 306 YGLRLVIEVKNGINPEALLAQLYKHTKLEDSFGINAVALVDGQPRTMTLKEMLQVYLDHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV++RR K+ L KA+DR H++ GL +A+ ++D+V+ IIR S +   AR+ LM+      
Sbjct: 366 LEVILRRAKFQLGKAQDRLHLVEGLLLAMIDIDDVIAIIRSSDDVPEARQRLME------ 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               T  L E+Q   IL+++L RLT L R ++  E + L   I 
Sbjct: 420 --------------------TFELDEIQANYILDMQLRRLTKLSRIELETERDELRRRIT 459

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG----------LLDMEDEDCIVR 535
           E  +++         +  +L  +     +PRRT ++EG           L++ D+ C V 
Sbjct: 460 ELTELIDDPDLQRDTVASQLSEMAATYGSPRRTVLLEGSGAAAALPAQPLEIPDDPCWV- 518

Query: 536 EDMVVTVSHLGYVKR---------VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
             M+ +   +  + R         +P S       G +GR        D V     V+ H
Sbjct: 519 --MMSSTGLMARMTRPADGDDPGHLPTS-------GPRGR-------HDVVVAAIAVTAH 562

Query: 587 TSVLFFSSLGFVYKEKVWRLP-----IGSPQARGKALI-NILSLNQGERITTIMPFPEDE 640
                 +S G + K +   LP       +P  RG + + ++L L   ER   +    ED 
Sbjct: 563 AQFGVLTSHGRLVKAEAIDLPEVVGTANAPSLRGGSRVEDLLVLTDAERAVGLTTLAEDS 622

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT 699
           +      +   T+ G V+R        +++     ++L+  DE++  VE     ++++  
Sbjct: 623 AG-----LALGTRRGVVKRVNPE---VLSKDEWDVIRLEDNDEVVGGVELTDPSDELVFV 674

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           T   Q + F    +R   GR+  GV G+ L  G  V+   +    DA
Sbjct: 675 TSDAQLLHFAADLVRP-QGRSGGGVAGVRLTGGSSVVWFGVSPATDA 720


>gi|116074280|ref|ZP_01471542.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
 gi|116069585|gb|EAU75337.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
          Length = 824

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 278/724 (38%), Positives = 411/724 (56%), Gaps = 61/724 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVEPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  LLD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQALLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+ +I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVRKPDLSDDKLLALIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE     K    R  +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPEKVLVDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ +L  V+ +I+ + +  +AR  LM        
Sbjct: 363 LTMIRRTTHALRKTEDRLEVVEGLITALDSLQRVIAMIQEAKDAASARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLTGL ++ +RNE   L +E + 
Sbjct: 417 --------------------LDLTERQADAVLAMPLRRLTGLEQESLRNEAQELRLERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------------- 532
              +L  R +LL  + QEL  +K    TPRRTR++EG   +  E                
Sbjct: 457 LQLLLQERDQLLDAMVQELKQLKKRFATPRRTRLIEGGDHLLAEKAANQRPNAELQRRQA 516

Query: 533 --IVREDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI-VSTHTS 588
              +  D  + + + G VK V P  + R           V + DE     L + +     
Sbjct: 517 LGALPSDGRLLIQNDGQVKVVSPQLLGRLHL-----NEAVGLGDEPSPAQLILPIQPAPR 571

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNL 646
           +L  ++ G +   + W      P    + L   L   +G+ + +++  P  +D S+   L
Sbjct: 572 LLVLTASGRMALLR-WEFAGQQPGGLERFLPTAL---EGDPVVSLLRLPAADDASTNTRL 627

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   +  G  +R  L D  +++      +KL     +LS   C     + L + +G+ +
Sbjct: 628 SLGLLSTDGRFKRLPLDDVQELSGRAATILKLKDGVSLLSAVICEDGGTVTLISDIGRVL 687

Query: 707 RFPI 710
             P+
Sbjct: 688 CLPV 691


>gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
 gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
          Length = 970

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 319/949 (33%), Positives = 498/949 (52%), Gaps = 104/949 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I   SI++ M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G  ++    +K Y
Sbjct: 10  KDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDNAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  GIAVG+ATNIP
Sbjct: 130 EARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGLATNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D  VA IDN DI    LM  I+GPD PTG +I+G   + +AY  G G + +R
Sbjct: 190 PHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIIIGEQALLSAYEKGEGRVTLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK   DR  I++ E PY+ NK+ +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 250 AKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRDESDRNG 309

Query: 308 YRVVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ +V   +L  L++ T LQ   S NMVA+   KPE   L  ILK +V  
Sbjct: 310 IRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIADGKPETLGLKAILKYYVEH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EVV+RR++  L  A+ R H++ G   A+  +DE++  IR S + + + + L+ +    
Sbjct: 370 QKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSKKDSEQNLVNK---- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    S  Q +AI+EL L +LTGL       E  +L  +I
Sbjct: 426 ----------------------FGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVV 540
           K    ILSS   L  ++K+EL  VK++   PRRT IV    +  +D+  E+ I+ ED+V+
Sbjct: 464 KALEKILSSEKELFKVVKKELEEVKEKYGDPRRTEIVHDDEQAKIDI--EELILDEDIVI 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GY+KRV    Y   RR       +  R+ DF T +   +T  +++ F++ G +Y+
Sbjct: 522 TLSNEGYIKRVADKYY---RRINPKVEDIEYREGDFNTYVLNGNTKDNMMIFTNQGNLYQ 578

Query: 601 EKVWRLPIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            ++  +P    + +G+    LI  L +++ E+I  I    E   S +    +F T  G +
Sbjct: 579 IRISNIPEMKWKEKGERLDTLIKSLDIDK-EKIIDIYINSELLPSKS---FMFFTNRGVI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIR 714
           +++ L  F + N S  +A+KL   ++++    V T   E  I + TK G      I  I 
Sbjct: 635 KKSSLDKF-KTNYSKLLALKLKDNEKLIDIKLVNTGHVEKYISVDTKNGLSFTVDIPRIE 693

Query: 715 VFAGRNSVGVRGISLAKGDQVISM---------AIVLHADADYDERI-----------CY 754
             + RN +G +  +++  D+V S+           V++ + +   +I           CY
Sbjct: 694 D-SERNIMGTQIFNISNNDEVKSINYTDKFNISNFVVNINKNGSIKISNRINYKNFYGCY 752

Query: 755 MKHMSAQRRLISGDTEEITS-----LKNDSSVEGNISEERCQELKLKEQFILTV------ 803
              +S  R +I G+   +       ++N  S +G    +   + K  E+ I+ +      
Sbjct: 753 ANSLS--RLIIFGNKGNVYCVPAYMIQNIDS-KGIKLNDLIDDFKQNEEEIVNIYSISEL 809

Query: 804 ---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
                    ++ G+ KRTS  +F   N   KG +        E   ++ V   N++D+  
Sbjct: 810 SDSTSVYFFTKSGYVKRTSLEEFNGENPCIKGYKFK-----KEEDTIINVLLANNDDKKD 864

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +IL++     IR   N I    +   GV   S   ++ V+  E I + E
Sbjct: 865 VILITKNAMGIRFEANNISYMGKIASGVTGISLRDNDEVIFAEFIDKKE 913


>gi|119963748|ref|YP_947533.1| DNA topoisomerase IV subunit A [Arthrobacter aurescens TC1]
 gi|119950607|gb|ABM09518.1| putative DNA gyrase subunit A [Arthrobacter aurescens TC1]
          Length = 838

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 288/749 (38%), Positives = 407/749 (54%), Gaps = 65/749 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++ +VK A
Sbjct: 21  IVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRGHVKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  + D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 140 AAAALTMTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGTTGIAVGMATNMPPHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +I NP   L+ +M  I GPD PTG  I+G  G+++AYATGRGS   R    
Sbjct: 200 VEVIAAARHLIANPGATLEEIMRFIPGPDLPTGGRIVGLDGVRDAYATGRGSFKTRAKVE 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VIEL
Sbjct: 260 VEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNSKKLTGISDVVDLTDRNHGLRLVIEL 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L+ +V  R  VV RRT 
Sbjct: 320 KNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLLQLLQVYVEHRLNVVRRRTS 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM        I D     
Sbjct: 380 FRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEASAARERLMS-------IYD----- 427

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q   ILELRL +LT   R ++  E + L  EI+    IL+S 
Sbjct: 428 --------------LTEIQANYILELRLRQLTKYSRLELEKEQDELRREIEALEAILASD 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS-HLGYVKRVPL 553
             L  ++  EL  + ++  TPRRT     LL+ E     V   +  +V    G    +PL
Sbjct: 474 ELLRDLVSGELAVIAEKYGTPRRTV----LLESEAVSPTVAAALAASVPGPKGKAAALPL 529

Query: 554 SVYRAQRRGGKGRSGVVMR--------------DEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +           SG + R                D    +   +    +   +S G + 
Sbjct: 530 EIPDDPCWALLSVSGQIARTSNQEPLAEAGPRTKHDVFRSVVKTTARGEIGAVTSQGRML 589

Query: 600 KEKVWRLPIGSP------QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + +V  +P+  P       A G    + ++L +GE +   +P         +  +   T 
Sbjct: 590 RLQVMDMPVLPPVSGLPNLAGGVPAKDFITLLKGETLVAFVPL--------DAVLAIGTV 641

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISA 712
            G V+R +  D+  +NR     + L  +D +L+VE    +N D++  T+  Q +RF  S 
Sbjct: 642 QGVVKRVQ-PDY-PLNREDWEIIALKDKDLVLAVEPAQDDNVDLVFVTRQAQLLRFSASN 699

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   GR + G+ GI LA GD+VI    V
Sbjct: 700 VRP-QGRTAGGMAGIKLAAGDEVIHFGTV 727


>gi|266624328|ref|ZP_06117263.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
 gi|288863830|gb|EFC96128.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
          Length = 745

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 276/727 (37%), Positives = 417/727 (57%), Gaps = 32/727 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 5   IVKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAEEVYLKDLDK-TVEFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  +A IDNPDI    LME + GPDFPTG +I  ++G+   Y TG G I +RG  
Sbjct: 184 LGEVIDAVMAYIDNPDISTRELMEYMPGPDFPTGGIIANKSGLAEIYETGSGKIKLRGKI 243

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE  K   D++++V+TEIPY +  A +   L  +AELV  K++ D+ D+ ++S++ G R
Sbjct: 244 DIELGKRKADKDKMVITEIPYTMIGAGINKFLVDVAELVESKKLTDVVDISNQSNKDGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+ A  + I N LY+ T L+  + VNM+A+ G +PE   L GILK ++ F+    
Sbjct: 304 IVLELKKDADVEKIRNILYKKTKLEDTYGVNMLAIAGGRPETLNLKGILKNYLDFQYHNA 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+  LM  + + S+IK 
Sbjct: 364 TRKYQALLEKELEKKEIREGLIKACDIIDLIIAVLRGSKNLKDAKACLM--TGDTSNIKF 421

Query: 430 LID-LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            +    +D+         ++ +E Q  AILE+RL +L GL    +  E      +I E  
Sbjct: 422 RVSGFAEDAK-------NLHFTEKQASAILEMRLYKLIGLEILALEKEYKETMAKIAEYR 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL SRS +  +IK++L ++K+E  TPRRT I +G   + DE  +   ++V  +   GY 
Sbjct: 475 HILESRSNMDVVIKKDLAAIKEEFATPRRTLIEDGKEAVYDETAVAVSEVVFVMDRFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   R   +  +  V+    F TD         +  F++ G +++ K   +P 
Sbjct: 535 KLLDKSTYDRNRETIETENVHVV--SCFNTD--------KICMFTNTGNLHQVKAADIPY 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N LS   G +   I  +     S      +FAT+   V+R    +F   
Sbjct: 585 GKLRDKGTPIDN-LSKYDGTKEEII--YLCSAESMKGSRFLFATRQALVKRVPGEEFETN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           NR+   A KL   D ++S+     E +++L T  G  +RF +  I     +NS GVRGI 
Sbjct: 642 NRT-VAATKLQDGDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEMK-KNSRGVRGIK 699

Query: 729 LAKGDQV 735
           LA+G+++
Sbjct: 700 LAQGEEL 706


>gi|241896017|ref|ZP_04783313.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241870748|gb|EER74499.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 819

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 272/752 (36%), Positives = 419/752 (55%), Gaps = 58/752 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K++
Sbjct: 3   ETGNIQELSLEAVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNKDGNTFDKQF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+AL RM+QDW LR  LIE  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRAPLIEMHGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L DL K+TVD   N+D +  EP VL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSKLAGEMLRDLDKETVDMVLNFDDTEYEPTVLPAHFPNLLVNGATGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D  + ++ +P+  L+ LM  ++GPDFPTG +I G  GIK+AY  GRG IV+R
Sbjct: 183 PHNLGEVIDALIYLLAHPNASLEDLMGFVQGPDFPTGGIIQGVDGIKSAYKNGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I    G + QI ++EIPY+VNKA +++KI E+   K +  I ++RDESDR G  + 
Sbjct: 243 SKTEIIALKGGKSQIQISEIPYEVNKATLVKKIDEIRLNKDVSGIVEVRDESDRDGLSIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+   IL  L + T LQ  ++ NMVA++  +PER  L   L+AF+  + E++ +
Sbjct: 303 IELSKDANVQGILAYLLKKTDLQVTYNFNMVAIHNLRPERVGLKTALQAFLDHQVEIITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++R H++ GL  A++ LDEV+  IR S + + A++                
Sbjct: 363 RTEYDLRKAKERQHIVTGLIKALSILDEVIATIRSSEDRKNAKQ---------------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +L+D   +T+           Q  AI+ L+L RLT      ++ E   L   I     IL
Sbjct: 407 NLVDKYEFTLE----------QAEAIVTLQLYRLTNTDVTQLQAEFEELSDRIMHFNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVK 549
           S    L   ++QE  S+K E ++PR T I   + +++ +  +    ED+ V VS +GYVK
Sbjct: 457 SEPKVLRQELRQEFKSIKKEYNSPRLTTIEADVQELKYDSTVTVADEDVAVLVSKMGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI--VSTHTSVLFFSSLGFVYKEKVWRLP 607
           R  L  ++A        +G  +RD+D    LFI  V+T   +  F++ G V    +  LP
Sbjct: 517 RSSLRSFKA----SGDENG--LRDDD--EPLFIERVNTLQHMFIFTNKGHVIYRPIHELP 568

Query: 608 IGSPQARGKALINILS--LNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
               +  G+ L   +S  ++  E   +  +      E +W     + AT  G +++    
Sbjct: 569 EFKWKEPGEHLSQSVSGFISDEEIIHVEIVNDINSLEGTW-----LSATNDGYIKQFNFE 623

Query: 664 DFI---QINRSGKIAMKLDSRD------EILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           D        +   + MKL + D      E LS+   + +  ++LTTK    +R+ ++ + 
Sbjct: 624 DLTPRSTYKKRSTVYMKLKADDSSIIGLEYLSIGAAS-DRTVILTTKHAVGLRYDVTEVP 682

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           + +G  + GV+ ++LA  D +++M+      A
Sbjct: 683 L-SGNRTAGVKAMNLADSDNIVNMSTATEKQA 713


>gi|154506274|ref|ZP_02043012.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
 gi|153793413|gb|EDN75833.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
          Length = 747

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 266/728 (36%), Positives = 408/728 (56%), Gaps = 29/728 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 4   ESQIIRTEYSDVMRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYTE
Sbjct: 64  KCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL KD +DF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+IP
Sbjct: 124 ARLTKFTQEAYLADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+D   A + N  I    LM+ I+GPDFPTG +++ +  +   Y TG+G I IR
Sbjct: 184 THNLGEVIDAVKAYMKNDAITTKQLMKYIKGPDFPTGGIVVNKDDLPEIYETGQGKIKIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E   G ++Q+V+TEIPY +  A +   L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 244 GKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGI 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 304 RIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKAIIEHHVDFQFEL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ K LL K  D+  V  GL  A   +D ++ I+R S + + A+  L Q       I 
Sbjct: 364 TTRKYKTLLAKELDKKEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQ------GIT 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           + I      S  + +   +  +E Q  AILE+RL +L GL  + ++ E  +    I    
Sbjct: 418 ENIKFKSQISKKMAA--MLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIARYE 475

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+    +  +I +EL + K E    RRT I      + +E  +  ++++  +   GY 
Sbjct: 476 DILNHYDSMATLIMEELDAFKKEYGRKRRTAIENAEAAVFEEKKVEEQEVIFLMDRFGYA 535

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V +SVY   +      +  V+                 +  F+  G +++ KV  LP 
Sbjct: 536 KTVDVSVYERNKEAADSENKYVVN----------CLNTGKICLFTDTGKMHQIKVMDLPY 585

Query: 609 GSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+ + +   E+I TI     D        ++FATK G ++R   S+F Q
Sbjct: 586 GRFRDKGVPIDNVSNYSSSEEQIVTIC----DAQQIAFEKLLFATKQGMIKRVDGSEF-Q 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   D ++ V    +  +I+L T+ G  +RF  + I     + +VGVRGI
Sbjct: 641 VAKRTIAATKLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLTAEIPE-KKKGAVGVRGI 699

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 700 KLQKTDEL 707


>gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 777

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 279/760 (36%), Positives = 412/760 (54%), Gaps = 76/760 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVKCAR 76
           ++ + +  +  YL YA++VI  RA+PD+RDGLKPV RRILF M   + +  +K++ K A 
Sbjct: 6   TIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSAT 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GE MGKYHPHG+ AIYDA+ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE +LQ
Sbjct: 66  VVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKLQ 125

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  +L+ L  +TVD+R N+DGS +EPVVL AR PN+LVNG  GIAVGMATNIP HNLG
Sbjct: 126 PLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNLG 185

Query: 197 EVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
           EVVD  + +I+ P++D   L+ + I+GPDFPTG  IL  +  +   Y TG G+I +RG  
Sbjct: 186 EVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGAY 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
              +T G + + ++  +PY V+K+ ++E+IA+ + E+ +  ++++RDES     R+V+EL
Sbjct: 246 ---RTKG-KTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDES-TDDVRIVLEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFREEV 368
           KRG+  +  +  L+++T LQ  F VN+  L      +   P++  L  IL+ F+ FR +V
Sbjct: 301 KRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +  L +   R H+L G       LDE + IIR S N   A + LM R        
Sbjct: 361 VTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E QT AILE +L +L+ +  + IR+EL       +E  
Sbjct: 413 ------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEKRARAEEIR 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLG 546
            +L       GI+K EL  ++DE    RR+ +V    DME  +ED IV ED+ V V+  G
Sbjct: 455 RLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPEADMEYTEEDYIVDEDVHVIVTRDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +VKR     Y            +  RD D V      ST  +V FF++ G  Y  ++  +
Sbjct: 515 WVKR--QGTY-------SDLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTTRITEI 565

Query: 607 PIGSPQARGKALINILSLNQGERITTIM---------PFPEDESSWNNL----------- 646
           P  S    G  +  + S + GE +  ++         P P + S    L           
Sbjct: 566 P--STTGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDAPDQ 623

Query: 647 -YVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
            YVV  +K G   R  L  +++ +  +G+  M+L+  DE+  V     + +I L +  G+
Sbjct: 624 PYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENICLASHDGR 683

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            + FP+  + V+ G  + GVR I L   D+V+  A+   A
Sbjct: 684 ALVFPVHQVSVYKG-PAKGVRAIRLEDNDRVLDFALSTRA 722


>gi|315653531|ref|ZP_07906451.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
 gi|315488893|gb|EFU78535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
          Length = 831

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLTFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|225353988|gb|ACN88537.1| DNA gyrase subunit A [Arcobacter halophilus]
          Length = 456

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/481 (47%), Positives = 320/481 (66%), Gaps = 27/481 (5%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++++YDAL RMAQ++S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 3   YKKSARIVGDVIGKYHPHGDSSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDNAAAMRY 62

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG  GIAVGMAT I
Sbjct: 63  TEARMTKVSEEILRDIDKDTVNFVQNYDDTLKEPAVLPTRVPTLLLNGSEGIAVGMATKI 122

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + ++DN     + LM+ I+GPDFPTG  I GR GI +AY TGRG + I
Sbjct: 123 PPHNLKELLDAVLYMVDNKGATAEDLMQFIQGPDFPTGGTIFGRRGIIDAYKTGRGRVKI 182

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE T G +E IV+ E+PYQVNK+ ++E+IA L ++K++  I+++RDESDR+G RV
Sbjct: 183 RAKHHIE-TKGKKEVIVLDELPYQVNKSRLIEQIATLAKDKQVEGISEVRDESDREGIRV 241

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A ++++LN LY+ T L++ F + ++A++  +P+ F L  +L  F++ R+ V++
Sbjct: 242 VIELKKDAMSEIVLNNLYKSTPLETTFGIILLAVHNKEPKVFNLPELLNLFLSHRKTVII 301

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  R          
Sbjct: 302 RRTIFDLEKAKARAHILEGLKIALDNIDEVVQIIRSSANDAEAKEKLQDR---------- 351

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS +Q++AIL++RL RLTGL RD +  E   L   I E   I
Sbjct: 352 ----------------FGLSIIQSQAILDMRLGRLTGLQRDKLEAEYQELLALIAELESI 395

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  +L  IIK+E+  +K++    RRT I +   +++ ED I  E MVVT++H GYVKR
Sbjct: 396 LKSEDKLNEIIKEEVAEIKEKYSDERRTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKR 455

Query: 551 V 551
           V
Sbjct: 456 V 456


>gi|312875591|ref|ZP_07735592.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912647|ref|ZP_08175030.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
 gi|311088845|gb|EFQ47288.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325478068|gb|EGC81197.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
          Length = 831

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KEVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLTFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|223043266|ref|ZP_03613313.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
 gi|222443477|gb|EEE49575.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
          Length = 800

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 284/826 (34%), Positives = 453/826 (54%), Gaps = 72/826 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  + K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFEKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+  +IL    
Sbjct: 408 ---------AEFDFTEAQAEAIVMLQLYRLTNTDIVALEEEHAELEALIKKLRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   +  + ++ E  +  E+++++VSH GY+KR   
Sbjct: 459 ALLSVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ +  I+ +++ E++  +     +E  +N + + V ATK+G ++++ +S F +  R  
Sbjct: 574 LGQHVSQIVPIDEDEQVVDVY----NEKDFNSDAFYVMATKNGMIKKSSVSQF-KTTRFN 628

Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  + MK+   DEI++V     +  I + T  G  + +  S +    G  + GV+ I+L 
Sbjct: 629 KPLVGMKVKDHDEIVNVIRLESDQLITVLTHKGMSLTYSTSELS-DTGLRAAGVKSINLK 687

Query: 731 KGDQVI-------SMAIVLHADADYDERICYMKHMSAQRRLISGDT-------------- 769
             D V+       S +I++       +RI Y K +   +R   G T              
Sbjct: 688 DEDYVVMTESVSDSDSILMITQRGAIKRISY-KVLQVAKRAQRGITLLKELKKNPHRIVD 746

Query: 770 --------EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                   E  T   N+    GNI+E    E      FI+ V + G
Sbjct: 747 AAVVKEGQETYTVFSNNHEESGNINEVHLSEQYTNGSFIIDVDDFG 792



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 125/273 (45%), Gaps = 31/273 (11%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  + HG ++R     F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSVSHHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVF----AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            P+  +        G++   +  + + + +QV+     ++ + D++    Y+  M+ +  
Sbjct: 561 IPVHKLADIRWKELGQHVSQI--VPIDEDEQVVD----VYNEKDFNSDAFYV--MATKNG 612

Query: 764 LI--SGDTEEITSLKNDSSVEGNISE--ERCQELKLK-EQFILTVSEKGFGKRTSSYDFR 818
           +I  S  ++  T+  N   V   + +  E    ++L+ +Q I  ++ KG      S  + 
Sbjct: 613 MIKKSSVSQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQLITVLTHKGM-----SLTYS 667

Query: 819 ISNRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            S  S  G+RA  V  IN  +   +V    V+D+D I++++ +G + R+    +++A RA
Sbjct: 668 TSELSDTGLRAAGVKSINLKDEDYVVMTESVSDSDSILMITQRGAIKRISYKVLQVAKRA 727

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            +G+ +    K     +  RI ++ +V E + T
Sbjct: 728 QRGITLLKELKK----NPHRIVDAAVVKEGQET 756



 Score = 41.2 bits (95), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL+VS  G+ KRTS+  F  S  +  G++  D     
Sbjct: 481 STIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTSTRSFNASGVTEIGLKDGD----- 535

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE+VV 
Sbjct: 536 ---RLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVD 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|310816011|ref|YP_003963975.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
 gi|308754746|gb|ADO42675.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
          Length = 487

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/483 (48%), Positives = 313/483 (64%), Gaps = 7/483 (1%)

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R W A DI + I LIDD S+T+  DGT  LS++Q RAILELRL RLT +G  ++ +EL
Sbjct: 1   MTRRWPAMDIAEYIKLIDDPSHTMNDDGTYNLSDLQARAILELRLQRLTQIGVKEVTDEL 60

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  +I++ LDILSSR R+L II+ EL  V+D+   PRRT I +   D++DED I RED
Sbjct: 61  QELAAKIRDYLDILSSRERILAIIEGELTEVRDQFAVPRRTEIADWAGDLDDEDLIERED 120

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTV+  GY+KR  L+ +R+Q+RGGKG S +  +DED VT LF+ +THT +LFF++ G 
Sbjct: 121 MVVTVTSGGYIKRTALAEFRSQKRGGKGLSSMQTKDEDVVTALFVANTHTQLLFFTTDGM 180

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VYK K WRLP+ +  ARGKA++NIL + QG  I  IMP    +S W+ L  VFAT  G+V
Sbjct: 181 VYKLKCWRLPLAARTARGKAIVNILPIPQGVTIAAIMPVDRPDSEWDELQAVFATSDGDV 240

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RRN LSDF  + R+GKIAMKL     ++ V+  ++++D+LL T  G+ +RF  + +RVF 
Sbjct: 241 RRNALSDFTNVMRNGKIAMKLPEGVSLVDVKIASEDDDVLLVTNSGRAIRFQTTDVRVFK 300

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR+S GVRGI L   D+V+SM I+ H +AD  ER  Y+K     RR I G  EE  +   
Sbjct: 301 GRDSTGVRGIRLQGDDRVVSMDIIKHFEADPAERAAYLK----MRRAIEGVLEEAET-DE 355

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D    G I++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+RA D +    
Sbjct: 356 DEVEAGAITQERYAEMSAFENLILTITRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRG- 414

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA FPV  +DQ++LV+  G  IRVPV  I   SR   GV +F+T  DE VVSV RI
Sbjct: 415 -GDLVAAFPVEMDDQVMLVTSTGQSIRVPVKGISFRSRGAGGVRVFNTGTDEHVVSVARI 473

Query: 898 RES 900
            E+
Sbjct: 474 AEA 476



 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 5/116 (4%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDIL 697
           S++ NL +   T+ G  + +   D+    R G     +D+     ++++      ++ ++
Sbjct: 372 SAFENLILTI-TRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRGGDLVAAFPVEMDDQVM 430

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           L T  GQ +R P+  I  F  R + GVR  +    + V+S+A +  A  D D+ I 
Sbjct: 431 LVTSTGQSIRVPVKGIS-FRSRGAGGVRVFNTGTDEHVVSVARIAEAGGDEDDAIT 485


>gi|160938078|ref|ZP_02085435.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439072|gb|EDP16827.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 744

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 269/755 (35%), Positives = 424/755 (56%), Gaps = 31/755 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K A
Sbjct: 5   ILRTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMRELHLDHDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q++   + L++G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQNFKKGMALVDGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D   A IDNP++    LME + GPDFPTG VI  ++ +   Y TG G I +RG  
Sbjct: 184 LGEVIDAVQAYIDNPEVTTQELMEFMPGPDFPTGGVIANKSELPQIYETGMGKIKLRGKF 243

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  K   D+++++++EIPY +  A +   L  +A+LV  K++ D+ D+ ++S+++G R
Sbjct: 244 EVELGKRKADKDKLIISEIPYTMIGAGINKFLVDVADLVESKKLTDVVDISNQSNKEGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL++ A  D I N LY+ T L+  F VNM+A+   +PE   L GIL+ F+ F+ E  
Sbjct: 304 IVLELRKDADIDKIKNILYKKTKLEDTFGVNMLAIADGRPETLNLKGILRNFLNFQYENT 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+   LL K  D+  V  GL  A   +D ++ I+R S N + A+  L   + + ++I  
Sbjct: 364 ERKYNVLLQKEMDKKEVQEGLIAACDCIDLIIAILRGSKNLKDAKACLT--TGDVTNIHF 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +   ++ +  +        +E Q  AILE+RL +L GL    +  E      +I E   
Sbjct: 422 KVPGFEEDAKKLA------FTERQASAILEMRLYKLIGLEILALEKEHRETLRKIGEYKK 475

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+++  +IK++L ++K E  TPRRT I +G   + DE  +  ++MV  +   GY K
Sbjct: 476 ILGSRAQMNRVIKEDLAAIKAEFATPRRTLIEDGPEAVYDESAVAVQEMVFVMDRFGYCK 535

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            +  S Y   +            D + V  +  ++T    LF +S G +Y+ K   +P G
Sbjct: 536 LLDKSTYDRNQE---------TVDTEQVHVVKCLNTDKICLFAAS-GSLYQIKAMDVPAG 585

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  + N+   +  +     +   ED         VFATK   V++    +F + N
Sbjct: 586 KLRDKGTPIENLSKFDGAKDTIVYLTSAED---MKGRIFVFATKMAMVKQVPSEEF-ETN 641

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                A KL   DE+ +V     E ++++ T  G  +RF +  I +   + S GVRGI L
Sbjct: 642 NRVVAATKLQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEISMLK-KASRGVRGIRL 700

Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRR 763
            K +++  + ++  +   DY  +  ++  +   +R
Sbjct: 701 TKNEELEKLYLIGENPIVDYKGKEVHLNRLKLAKR 735



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +K +  +  ++    K+  S +F  +NR          +K+ E   L AV PV    +++
Sbjct: 616 MKGRIFVFATKMAMVKQVPSEEFETNNR------VVAATKLQEGDELAAVIPVEGETEVV 669

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +  G  +R  + EI +  +A++GV      K+E +  +  I E+ IVD
Sbjct: 670 IQTTGGVFLRFALEEISMLKKASRGVRGIRLTKNEELEKLYLIGENPIVD 719


>gi|222153160|ref|YP_002562337.1| DNA topoisomerase IV subunit A [Streptococcus uberis 0140J]
 gi|222113973|emb|CAR42255.1| topoisomerase IV subunit A [Streptococcus uberis 0140J]
          Length = 819

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 266/741 (35%), Positives = 411/741 (55%), Gaps = 49/741 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + FLL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEISGFLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P+  L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDATVYMIDHPNAKLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G ++QI+VTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IEL
Sbjct: 243 EIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A  + +LN L +YT LQ  ++ NMVA++ + P +  +  IL +++A R+ +++ R+K
Sbjct: 303 KKDADTETVLNYLLKYTDLQVNYNFNMVAIDHFTPHQVGIQKILSSYIAHRKSIIIERSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKAKAEKRLHIVEGLIRVLSILDEVIALIRASDNKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          +E Q  AI+ L+L RLT      ++ E + L   IK    I+   
Sbjct: 406 -KVSYA--------FTEEQAEAIVTLQLYRLTNTDILTLQKEEDELNDLIKTLTAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + +  ++K+EL  VK +    RR+ + +    ++++    IV E+  V+V+  GY+KR  
Sbjct: 457 ATMYNVMKRELRDVKKKFGNERRSELQKEAQTIEIDTASLIVEEETFVSVTKSGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+  G V    +  L     +
Sbjct: 517 PRSFNASSLEEIGK-----RDDDHLIFVENAKTTQHLLLFTDQGNVIYRPIHELQDIKWK 571

Query: 613 ARGKALI-NILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI- 668
             G+ L  +I +    E I    I+ + E  S ++       T+ G ++R    D     
Sbjct: 572 EIGEHLSQHITNFATDELILHAEIVDYFEKGSYFS------VTQLGQIKRFDRKDLTPWR 625

Query: 669 ---NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               +S K A   + +D I+SV     E DILL +  G  +RF    + V  G  S GV+
Sbjct: 626 TYRTKSTKYAKLKNEQDRIVSVAPIFFE-DILLISHQGYALRFSAEEVPV-QGLKSAGVK 683

Query: 726 GISLAKGDQVISMAIVLHADA 746
            ++L  GD  I+ A +   D+
Sbjct: 684 AMNLKAGDH-IAAAFLASTDS 703



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 22/250 (8%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G ++R     F   N S    +     D ++ VE       +LL T  G  +  
Sbjct: 504 VSVTKSGYIKRTSPRSF---NASSLEEIGKRDDDHLIFVENAKTTQHLLLFTDQGNVIYR 560

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLHAD-ADYDERICYMK--HMSAQR 762
           PI  ++       +  + I       + + A   ++LHA+  DY E+  Y     +   +
Sbjct: 561 PIHELQ------DIKWKEIGEHLSQHITNFATDELILHAEIVDYFEKGSYFSVTQLGQIK 614

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRI 819
           R    D     + +  S+    +  E+ + + +   F   IL +S +G+  R S+ +  +
Sbjct: 615 RFDRKDLTPWRTYRTKSTKYAKLKNEQDRIVSVAPIFFEDILLISHQGYALRFSAEEVPV 674

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                 G++A ++   + I A      +   D   +++ +G+L RV  ++I   SRA +G
Sbjct: 675 QGLKSAGVKAMNLKAGDHIAAAF----LASTDSFFVLTQRGSLKRVATSDIPQTSRANRG 730

Query: 880 VVIFSTAKDE 889
           +++    K++
Sbjct: 731 LLVLRELKNK 740


>gi|312871702|ref|ZP_07731790.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092644|gb|EFQ51000.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 831

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 274/721 (38%), Positives = 416/721 (57%), Gaps = 47/721 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G VMG +HPHG++
Sbjct: 26  YSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAAKAVGNVMGNFHPHGDS 85

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 86  SIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRLSKISNLLLKDIDKDTV 145

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL EV+D  + +I +PD 
Sbjct: 146 QMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNLSEVLDALIYLIKHPDA 205

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + I+ T G + QIV+TEI
Sbjct: 206 KIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTKIKVTKGQKTQIVITEI 265

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK+   ++ ILN L++ T
Sbjct: 266 PFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELKKDVDSENILNYLFKST 325

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT + L K++ R  ++ GL 
Sbjct: 326 DLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKSVVLKRTHFDLVKSKQRLEIVEGLI 385

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S + + A+                ++L+++ S+T          E
Sbjct: 386 YALNILDQVIKTIRASKDKKDAK----------------VNLMNNYSFT----------E 419

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    + + +E   L   I + LDI+++++RL  +I +E   VK E
Sbjct: 420 KQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDVKKE 479

Query: 512 LDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L  Y++      G    
Sbjct: 480 FGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNG---- 535

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            +   D V     VST +++  F++ G +    V+ L     +  G+ L   + L   ER
Sbjct: 536 -LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDER 594

Query: 630 ITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKL-DSRDE 683
           I ++     D ++ N +L  +  T  G +++  LSD +Q  R+ K    + +KL D    
Sbjct: 595 IISVF----DINNLNSDLIFLITTNDGYIKQVALSD-LQPTRTYKSRAIMVIKLKDDHSN 649

Query: 684 ILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +L VE      +N+ILL T     +RF ++ + +   R + GV+ I+L   D  +  AI 
Sbjct: 650 VLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVKSINLKNDDDYVVSAIT 708

Query: 742 L 742
            
Sbjct: 709 F 709


>gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
 gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
          Length = 819

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 409/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T+ G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TRLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL + D+ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDSDHIVSAFI 698


>gi|309805614|ref|ZP_07699656.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308165052|gb|EFO67293.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 831

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLTFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|259500635|ref|ZP_05743537.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
 gi|302191324|ref|ZP_07267578.1| DNA topoisomerase IV subunit A [Lactobacillus iners AB-1]
 gi|259168019|gb|EEW52514.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
          Length = 831

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYTKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLTFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|238924636|ref|YP_002938152.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876311|gb|ACR76018.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 751

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/752 (35%), Positives = 413/752 (54%), Gaps = 41/752 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI G+ MGK
Sbjct: 22  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 81

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK      L
Sbjct: 82  YHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN GEVVDG +
Sbjct: 142 ADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFGEVVDGVI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   IEK    +
Sbjct: 202 AYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEIEKGKAGK 261

Query: 264 EQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           +++V+TEIPY +   N    L  +  LV  K   DI D+ ++S ++G R+V+ELK+GA  
Sbjct: 262 DKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLELKKGADV 321

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ + LL K 
Sbjct: 322 EALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKYETLLAKE 381

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +++  +  GL  A   +D ++ I+R S + + A+  L+         K        S  +
Sbjct: 382 QEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFK--------SKAS 433

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  RS +  +
Sbjct: 434 EAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAKV 493

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-----DMVVTVSHLGYVKRVPLSV 555
           I +EL + + E    RRT      LD  +E  +V++     D+V+ +   GYVK V  S 
Sbjct: 494 IMKELKAFRKEYARDRRTE-----LDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDTST 548

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y   +      + ++++          V     +  F++ G ++  KV  LP G  + +G
Sbjct: 549 YDRNKDTADAENKLILK----------VKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKG 598

Query: 616 KALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
             + N+ + +   E I  I P  + E       ++F TK   ++    ++F+ + R    
Sbjct: 599 TPIDNVSNYDSSKEDIVFIAPLMDVEKHK----LIFGTKSAMIKLVDGAEFV-VTRKTSQ 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KL   DE+L V+  ++   +++ +K    +R     I     + +VGVRG+ L + D+
Sbjct: 654 ATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPE-KKKAAVGVRGMRLDREDE 712

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +    I L  D D  E     K ++  R  I+
Sbjct: 713 LTD--IYLLNDQDEKEVEVKGKQVALHRLHIA 742


>gi|291525297|emb|CBK90884.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale DSM 17629]
          Length = 751

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/727 (35%), Positives = 405/727 (55%), Gaps = 39/727 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI G+ MGK
Sbjct: 22  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 81

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK      L
Sbjct: 82  YHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN GEVVDG +
Sbjct: 142 ADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFGEVVDGVI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   IEK    +
Sbjct: 202 AYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEIEKGKAGK 261

Query: 264 EQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           +++V+TEIPY +   N    L  +  LV  K   DI D+ ++S ++G R+V+ELK+GA  
Sbjct: 262 DKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLELKKGADV 321

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ + LL K 
Sbjct: 322 EALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKYETLLAKE 381

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +++  +  GL  A   +D ++ I+R S + + A+  L+         K        S  +
Sbjct: 382 QEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFK--------SKAS 433

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  RS +  +
Sbjct: 434 EAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAKV 493

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-----DMVVTVSHLGYVKRVPLSV 555
           I +EL + + E    RRT      LD  +E  +V++     D+V+ +   GYVK V  S 
Sbjct: 494 IMKELKAFRKEYARDRRTE-----LDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDTST 548

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y   +      + ++++          V     +  F++ G ++  KV  LP G  + +G
Sbjct: 549 YDRNKDTADAENKLILK----------VKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKG 598

Query: 616 KALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
             + N+ + +   E I  I P  + E       ++F TK   ++    ++F+ + R    
Sbjct: 599 TPIDNVSNYDSSKEDIVFIAPLMDVEKHK----LIFGTKSAMIKLVDGAEFV-VTRKTSQ 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KL   DE+L V+  ++   +++ +K    +R     I     + +VGVRG+ L + D+
Sbjct: 654 ATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPE-KKKAAVGVRGMRLDREDE 712

Query: 735 VISMAIV 741
           +  + ++
Sbjct: 713 LTDIYLL 719


>gi|325912052|ref|ZP_08174450.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
 gi|325476002|gb|EGC79170.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
          Length = 831

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLTFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|50365126|ref|YP_053551.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
 gi|50363682|gb|AAT75667.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
          Length = 908

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/746 (34%), Positives = 417/746 (55%), Gaps = 54/746 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I +S+ E EKGI S ++ D M   +  YA  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MAKKIDNSNIESEKGIISYALEDLMGERFGRYAKYIIQERALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ + ++K Y K AR+ GEV+GKYHPHG+ +IYDA+ RM+Q W L + LI+ QGN GS+
Sbjct: 61  NELNLTYDKPYKKSARVVGEVIGKYHPHGDTSIYDAMVRMSQWWKLGMPLIDMQGNNGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +LDDL K+TV F PN+D S +EP VL + +PN+LVNG  
Sbjct: 121 DGDNAAAMRYTETRLAKISDLMLDDLNKNTVKFAPNFDDSEKEPTVLPSYFPNILVNGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATN+P HNLGE++D  + +I  P+  +D ++EI++GPDFPTG  + GR GIK+A
Sbjct: 181 GIAAGYATNMPPHNLGEIIDATIKLIRTPNTRIDTILEIVKGPDFPTGGTVQGRNGIKDA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TG+G +++    H E  +     I++ EIPY+V K  +++KI +++     + I ++R
Sbjct: 241 FTTGKGKVIVNSKWHEEDNN-----IIIDEIPYEVVKQDLVKKIGDVIDANPGLGILEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+ I+L   A+ D +   L++ T L   ++ N VA+   +P++  +I ++ A
Sbjct: 296 DETDRNGLRIAIDLSDKANLDTVRKFLFKSTPLSISYNYNNVAIVDLQPKQLGIIELIHA 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A  +EV   RT++ LNKA  R  +++GL  A++ LD+V+ +IR S N   A   L+ +
Sbjct: 356 YIAHYKEVFTFRTQFDLNKAEKRLEIILGLIKAMSILDQVISVIRSSTNRSDAIENLISK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q  AI+++RL RLT      ++NE   L
Sbjct: 416 --------------------------FVFSQPQAAAIVDMRLYRLTSTDVVKLQNEKEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDM 538
            + I +   IL+S   +   I   L  VK +  TPRR+ + + +  LD+E ++ +V  + 
Sbjct: 450 DVNIAKLKAILNSEEVMDNEIINRLREVKKQFPTPRRSIVEDSIENLDVEQKEVLVEHEY 509

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI----VSTHTSVLFFSS 594
            + +S  GY+K +   +         GR            D++I    VS    ++  ++
Sbjct: 510 NLWISKDGYLKAIESKLISKNDPAVFGRKP---------NDMWIAAGEVSNLQHLILVTN 560

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y   +++LP+   +  G  +  I +++  E I +     +   +     ++  +K+
Sbjct: 561 KGTYYSIPLYKLPMSKWRDMGVHVNTIATMDPSEHIVSAFVVKDFAEALQQ--ILITSKN 618

Query: 655 GNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPIS 711
           GN++R  + D       R+ +I MKLD+ DEI+S    T +     + T+ G  VR+ I 
Sbjct: 619 GNIKRIPVKDLETKIFTRAFRI-MKLDAVDEIVSASLITSKTRTCGIITRNGYGVRYHIE 677

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVIS 737
            I V  G NS GV+  +L K D +++
Sbjct: 678 DIPV-QGTNSKGVKAANL-KEDYIVA 701


>gi|291529244|emb|CBK94830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale M104/1]
          Length = 751

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/727 (35%), Positives = 405/727 (55%), Gaps = 39/727 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI G+ MGK
Sbjct: 22  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARIVGDTMGK 81

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK      L
Sbjct: 82  YHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQKITQEAYL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN GEVVDG +
Sbjct: 142 ADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFGEVVDGVI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   IEK    +
Sbjct: 202 AYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEIEKGKAGK 261

Query: 264 EQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           +++V+TEIPY +   N    L  +  LV  K   DI D+ ++S ++G R+V+ELK+GA  
Sbjct: 262 DKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLELKKGADV 321

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ + LL K 
Sbjct: 322 EALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKYETLLAKE 381

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +++  +  GL  A   +D ++ I+R S + + A+  L+         K        S  +
Sbjct: 382 QEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFK--------SKAS 433

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  RS +  +
Sbjct: 434 EAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEHRSSMAKV 493

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-----DMVVTVSHLGYVKRVPLSV 555
           I +EL + + E    RRT      LD  +E  +V++     D+V+ +   GYVK V  S 
Sbjct: 494 IMKELKAFRKEYARDRRTE-----LDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDTST 548

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y   +      + ++++          V     +  F++ G ++  KV  LP G  + +G
Sbjct: 549 YDRNKDTADAENKLILK----------VKNIDKLCIFTNNGNMHLVKVLDLPYGKFRDKG 598

Query: 616 KALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
             + N+ + +   E I  I P  + E       ++F TK   ++    ++F+ + R    
Sbjct: 599 TPIDNVSNYDSSKEDIVFIAPLMDVEKHK----LIFGTKSAMIKLVDGAEFV-VTRKTSQ 653

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KL   DE+L V+  ++   +++ +K    +R     I     + +VGVRG+ L + D+
Sbjct: 654 ATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPE-KKKAAVGVRGMRLDREDE 712

Query: 735 VISMAIV 741
           +  + ++
Sbjct: 713 LTDIYLL 719


>gi|312872926|ref|ZP_07732986.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874231|ref|ZP_07734265.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|329920252|ref|ZP_08277036.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
 gi|311090301|gb|EFQ48711.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091448|gb|EFQ49832.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|328936297|gb|EGG32745.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 831

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLTFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555]
 gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016]
 gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555]
 gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 953

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 269/742 (36%), Positives = 410/742 (55%), Gaps = 50/742 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  + I + M ++Y+ YA+ V   RA+PD+RDGLKPVHRRI++G   +     + Y
Sbjct: 9   EDNNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGAYMLKAFPERPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQD++ ++ +I+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY GS +EP VL ARYPN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++   A ID  DI  + LME I+GPD PTG +I+GR  +  AY TG G   +R
Sbjct: 189 PHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGGIIIGRQSLICAYTTGEGKATLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD----IADLRDESDRQG 307
             + IEK    R  IV+TE PY+ +KA +L+ I+E+  +KR +     I+D+RDESDR G
Sbjct: 249 AKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPISDIRDESDRNG 308

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      A  +L  L + T LQ     NMVAL   KP    L  ILK ++ +
Sbjct: 309 IRAVIEFKKSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALADGKPVTLGLKDILKHYIKY 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++++ RRT+  L  A+ R H++ G   A+  +DE+++ IR S + + A   LM++    
Sbjct: 369 QKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDAASNLMEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +  Q+ AILEL L RLTGL       E   L   I
Sbjct: 425 ----------------------FEFTREQSEAILELMLYRLTGLEIVSFEKEHRELLKII 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTV 542
           K+   IL S   +L +IK+EL  + ++    R+T     E    ++ ++ +V ED+V+T+
Sbjct: 463 KKLTKILDSEKEILKVIKKELAEIAEKYGEERKTVIIEEEEEAKIDVKEILVDEDIVITI 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S   ++KR+ L  Y    R  K    +  R+ DF   +   ST  +++FF+  G +YK K
Sbjct: 523 SKEAFIKRISLKSYNRSSREVK---DIEYREGDFNKYVINSSTKDTIMFFTDKGNMYKIK 579

Query: 603 VWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              +P    + +G+ L NI+  ++  E     +   +D SS  +   +F T    ++R +
Sbjct: 580 GMDIPEFKWREKGEKLENIIKGIDLSEENIVAVYSIDDFSSPQDF--IFFTNMAGIKRTE 637

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQ--CVRFPISAIRVF 716
            + F+    +  +A++L   +E++ V+   +    N I + TK+G    V+ P  A+   
Sbjct: 638 TNAFVT-KYTKLMALRLKKEEELIDVKLVNRNESLNFIKVETKIGLKFTVKVPELALE-- 694

Query: 717 AGRNSVGVRGISLAKGDQVISM 738
             RN +     SL KGD+++ M
Sbjct: 695 -DRNIIANELCSLVKGDKIVKM 715



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+ F TK+G ++R +L++F  IN         ++ D +++VE   ++N+ILL T+ G  +
Sbjct: 807 YIYFFTKYGMIKRTELNEFKDINGWNTAHKFKNNEDFLVNVEYGKEKNEILLITEKGMAI 866

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +F   +I    G+++ GV  I+L KG+  +  ++V+   A+
Sbjct: 867 KFQGDSINSM-GKSASGVTAINL-KGEDSVIYSMVMEEKAN 905


>gi|313609056|gb|EFR84776.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL F2-208]
          Length = 586

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/598 (40%), Positives = 371/598 (62%), Gaps = 35/598 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTNYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E  SL  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVKR
Sbjct: 459 DEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLP 607
                Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V  LP
Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELP 570


>gi|309804012|ref|ZP_07698094.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309809853|ref|ZP_07703703.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163931|gb|EFO66196.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308169805|gb|EFO71848.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 831

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/737 (37%), Positives = 422/737 (57%), Gaps = 47/737 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPL 553
           RL  +I +E   VK E  + RRT+IVE    +E DE  ++  ED+ V VS  GY+KR  L
Sbjct: 464 RLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSANGYLKRSSL 523

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y++      G     +   D V     VST +++  F++ G +    V+ L     + 
Sbjct: 524 RSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYELVDTKWRE 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672
            G+ L   + L   ERI ++     D ++ N +L  +  T  G +++  LSD +Q  R+ 
Sbjct: 579 TGQHLSQEIVLTNDERIISVF----DINNLNSDLIFLITTNDGYIKQVALSD-LQPTRTY 633

Query: 673 K----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           K    + +KL D    +L VE      +N+ILL T     +RF ++ + +   R + GV+
Sbjct: 634 KSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR-AAGVK 692

Query: 726 GISLAKGDQVISMAIVL 742
            I+L   D  +  AI  
Sbjct: 693 SINLKNDDDYVVSAITF 709


>gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316]
 gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909]
 gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
 gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909]
 gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T  G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TSLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL + D+ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDSDHIVSAFI 698


>gi|253731988|ref|ZP_04866153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724398|gb|EES93127.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 800

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGVDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
 gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T  G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TSLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL + D+ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDSDHIVSAFI 698


>gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
 gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
          Length = 777

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 278/760 (36%), Positives = 411/760 (54%), Gaps = 76/760 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVKCAR 76
           ++ + +  +  YL YA++VI  RA+PD+RDGLKPV RRILF M   + +  +K++ K A 
Sbjct: 6   TIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSAT 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GE MGKYHPHG+ AIYDA+ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE +LQ
Sbjct: 66  VVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKLQ 125

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  +L+ L  +TVD+R N+DGS +EPVVL AR PN+LVNG  GIAVGMATNIP HNLG
Sbjct: 126 PLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNLG 185

Query: 197 EVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
           EVVD  + +I+ P++D   L+ + I+GPDFPTG  IL  +  +   Y TG G+I +RG  
Sbjct: 186 EVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGAY 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
              +T G + + ++  +PY V+K+ ++E+IA+ + E+ +  ++++RDES     R+V+EL
Sbjct: 246 ---RTKG-KTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDES-TDDVRIVLEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFREEV 368
           KRG+  +  +  L+++T LQ  F VN+  L      +   P++  L  IL+ F+ FR +V
Sbjct: 301 KRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +  L +   R H+L G       LDE + IIR S N   A + LM R        
Sbjct: 361 VTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E QT AILE +L +L+ +  + IR+EL       +   
Sbjct: 413 ------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEKRARAEGIR 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLG 546
            +L       GI+K EL  ++DE    RR+ +V    DME  +ED IV ED+ V V+  G
Sbjct: 455 RLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPGADMEYTEEDYIVDEDVHVIVTRDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +VKR     Y            +  RD D V      ST  +V FF++ G  Y  ++  +
Sbjct: 515 WVKR--QGTY-------SDLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTTRITEI 565

Query: 607 PIGSPQARGKALINILSLNQGERITTIM---------PFPEDESSWNNL----------- 646
           P  S    G  +  + S + GE +  ++         P P + S    L           
Sbjct: 566 P--STTGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDAPDQ 623

Query: 647 -YVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
            YVV  +K G   R  L  +++ +  +G+  M+L+  DE+  V     + +I L +  G+
Sbjct: 624 PYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENICLASHDGR 683

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            + FP+  + V+ G  + GVR I L   D+V+  A+   A
Sbjct: 684 ALVFPVHQVSVYKG-PAKGVRAIRLEDNDRVLDFALSTRA 722


>gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 819

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 280/755 (37%), Positives = 410/755 (54%), Gaps = 76/755 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + D    + I  + +T EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+ 
Sbjct: 8   TPDSPAGERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSEMGLR 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K +VK +R+ G+VMGK HPHG+A+IYDA+ R+ Q + LR+ LI+G GNFGS+D D PA
Sbjct: 68  PEKGHVKSSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGSLD-DGPA 126

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RLQ +A  + DDL +D VDF PNYD S  +P VL A +PN+LVNG  GIAVGM
Sbjct: 127 APRYTEARLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGASGIAVGM 186

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL EVV     ++ +PD  L+ LM+ + GPD PTG  I+G  G+K+AYA GRG
Sbjct: 187 ATNMAPHNLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKIIGLAGVKDAYANGRG 246

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           +   R    +E  +  +  +VVTE+PY V    ++EKI + V  K+IV I+D+ D +DR 
Sbjct: 247 AFKTRAKVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISDVTDLTDRN 306

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VI +K G S D +L QLYR T L+  FS+N V L   +P+   L  +L+ F+  R
Sbjct: 307 HGLRLVIGIKTGFSPDAVLEQLYRLTPLEDNFSINAVTLVDGRPQTLGLKALLEVFLKHR 366

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +VV RR+ + L K R+R H++ GL +A+ ++DEV+++IR S + + AR  L        
Sbjct: 367 LQVVTRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTRL-------- 418

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +D+ D                LSE+Q   ILELRL RLT   R ++  E + L  EI 
Sbjct: 419 --RDVFD----------------LSELQAEYILELRLRRLTKFSRIELEAEADKLRAEIA 460

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-----------------LLDME 528
               +LS  + +  ++  EL  V D+  TPRRT + E                  +L++ 
Sbjct: 461 RLEALLSDDTLIRALVSDELEQVADKFGTPRRTLLTEAPASIATTSRSAARKNLPVLEIA 520

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPL----SVYRAQRRGGKG--RSGVVMRDEDFVTDLFI 582
           D+ C      VV +S  G V RV +    S+  A RR      RS V        T++  
Sbjct: 521 DDPC------VVLLSTTGRVIRVAVAEGDSLLAAPRRSKHDAIRSRVTTTSR---TEIGA 571

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN-ILSLNQGERITTIMPFPEDES 641
           ++    ++ F+++       +  +P  S Q    A IN  L++   ER+  ++    D+ 
Sbjct: 572 ITNRGRLIRFTAM------DLPSVPSSSVQLDAGAKINEYLAIESKERVLALVSLDSDQP 625

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                 +   T+ G V+R     +        IA+K    DE++       ++++   T 
Sbjct: 626 ------IALGTRLGTVKRVIPGGWPSKPEFEVIALK--DGDELVGAAHSPDDSELTFITS 677

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
             Q + F  SA+R   G  + G+ G+ +  G  VI
Sbjct: 678 NTQLLHFSASAVRP-QGLTAGGMAGVRVDAGASVI 711


>gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
 gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
          Length = 819

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T  G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TSLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL + D+ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYVLRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDSDHIVSAFI 698


>gi|229824235|ref|ZP_04450304.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
 gi|229786589|gb|EEP22703.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
          Length = 819

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 263/737 (35%), Positives = 410/737 (55%), Gaps = 45/737 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  +S  D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +     +  Y 
Sbjct: 3   QEMIQELSFADVIGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYRDRNTADNPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW LR  LI+  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNPLIDMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ ++TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 123 ARLSPIAAQLLRDIKQETVDFILNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +    L+ L++++ GPDFPTGA+I G   I+ AY TG+G I +  
Sbjct: 183 HNLGEIIDAVIYLLTHKRPKLEELLDLVPGPDFPTGAIIQGIDAIQQAYKTGQGKITLVS 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G + QIVVTE+PY+VNK+ +++++ E+  ++++  IAD+RDESDR G R+V+
Sbjct: 243 QTDIETLKGGKSQIVVTELPYEVNKSKLIQRLDEIRIQRKVEGIADVRDESDRNGVRLVV 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   A  IL  L ++T LQ  +  NMVA+N  +PE   L  +L+A+++ ++EV+ RR
Sbjct: 303 ELKRDVDAKGILTYLLKHTDLQVNYHFNMVAINKRRPELVNLQTMLEAYISHQQEVLTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L   + R H++ GL   V+ LDEV+  IR S N + A+  L+              
Sbjct: 363 TQYDLANDQKRLHIVDGLIRVVSILDEVIATIRRSDNKQEAKENLV-------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S  Q+ AI+ L+L RLT      ++ E   L   I    +ILS
Sbjct: 409 ------------AEFDFSMEQSEAIVSLQLYRLTNTDITALQQERLELNERILMYQNILS 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  ++  EL ++K +  TPRR++I   +  L+++    I  E ++V+++  GY+KR
Sbjct: 457 NPEILNKVLINELKAIKKDFATPRRSQIQAEVQSLEIDTHILIPDEQVMVSLTKEGYMKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  + +      G     +RD D+   +  +STH  ++  +S G      V  LP   
Sbjct: 517 TSMRSFASSDLNSLG-----LRDFDYPIFVEELSTHQELVIITSKGNYIHIPVHELPEVK 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-- 668
            +  G  L     L  GER        ++E       V+ ATK G +++  LS F     
Sbjct: 572 WKDLGVHLSQNYQLQDGERFVNAFVASQEEHK-----VILATKAGMIKQTPLSAFTTYRS 626

Query: 669 --NRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              R+ K    LD +DE+++VE     Q  +++L ++   C+R+    +    G  + GV
Sbjct: 627 YKTRTAKAMNLLDDQDEVVAVECLKAGQNYEVVLLSRRSYCLRYSADLVSEM-GLKAKGV 685

Query: 725 RGISLAKGDQVISMAIV 741
             I L + DQV++  +V
Sbjct: 686 TAIKLKEEDQVVACLVV 702



 Score = 38.1 bits (87), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 8/74 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           EQ +++++++G+ KRTS   F  S+ +  G+R  D          + V  ++ + +++++
Sbjct: 502 EQVMVSLTKEGYMKRTSMRSFASSDLNSLGLRDFDYP--------IFVEELSTHQELVII 553

Query: 857 SDKGTLIRVPVNEI 870
           + KG  I +PV+E+
Sbjct: 554 TSKGNYIHIPVHEL 567


>gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
 gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
          Length = 819

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T  G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TSLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL + D+ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDSDHIVSAFI 698


>gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88]
 gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 959

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 302/860 (35%), Positives = 460/860 (53%), Gaps = 79/860 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + I + M  +YL YA  V   RA+PD+RDGLKPVHRRIL+G  ++    +K Y
Sbjct: 10  KDNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGAYKLAAFPDKPY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ LI+G GN+GS+DGD  AA RYT
Sbjct: 70  YKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ KD V+   NY  + +EP VL +RYPN+LVNG  GIAVG+ATNIP
Sbjct: 130 EARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAFGIAVGLATNIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN +ID   LM+ I+GPD PTG +++G+  +  AY  G G + +R
Sbjct: 190 PHNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILIGKNSLLKAYENGIGKVSLR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IE+    R  IV+TE PY+ NK+ +L+ I+E+  EKR    +  I+D+RDESDR G
Sbjct: 250 AKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYISDIRDESDRNG 309

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE KR    +++   L  LY+ T +Q   S NMVAL   KPE   L  ++  +V  
Sbjct: 310 IRAVIEFKRSTDREIVEKTLKYLYKNTDMQINISFNMVALANGKPEVMGLKTMIYHYVEH 369

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EVV RR++  L  A +R H++ G   A+  +DE+++ IR S + + A +         
Sbjct: 370 QKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEASK--------- 420

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  +LID  ++T          +VQ+ AILEL L RLTGL     + E   L  +I
Sbjct: 421 -------NLIDKFNFT----------KVQSEAILELMLYRLTGLEVTSFKKEHKELEKKI 463

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTV 542
           K    IL     LL +IK EL  V+++    R+T I++      ++ ED I+ E+ V+T+
Sbjct: 464 KALKKILQHEEELLKVIKFELEEVREKYGDKRKTLIIKDDEKAKIDIEDLIIDEETVITI 523

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+ KRV +  Y    R       +  R+ D+   L   ST  +VL F++ G +Y  K
Sbjct: 524 SKEGFCKRVSVKSY---NRSNSDIEDIEYREGDYNKFLLEGSTKDNVLIFTNKGNMYSTK 580

Query: 603 VWRLPIGSPQARGKAL---INILSLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V  +P    + RG  L   I  + LN+ E   I  +  F    ++ N+   +F T  G +
Sbjct: 581 VINIPEKRWKDRGIRLDETIKTIDLNEEEIIDIYVVSKF----TTQNDF--IFITSRGGI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIR 714
           ++  L  F + N S  +A+KL   +E++ V+      +E  + L+TK+G  + F I    
Sbjct: 635 KKTSLDKF-ETNYSKLMALKLREDEEVIDVKLMDKNREEKFLKLSTKMG--LDFTIEEPT 691

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +    RN +     S+   D+VI          D +E   +  +++    +I G+     
Sbjct: 692 INEEDRNILSNIFCSIGYKDKVIKSQF-----EDKNELAIFSLNVNKNGSIIKGNR---- 742

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD-V 832
             KN SS+   +   +   + LK   ++ ++              + N  GK I   D +
Sbjct: 743 --KNKSSINLEVDSNKKLLIFLKNGEVIKINCN-----------MLQNLEGKAINIFDLL 789

Query: 833 SKINEIGALVAVFPVNDNDQ 852
            K  +   ++ V P + ND+
Sbjct: 790 EKYEQKNEIINVLPFDYNDE 809



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 26/184 (14%)

Query: 615 GKALINILSL----NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           GKA INI  L     Q   I  ++PF  ++    +L + + TK G V++  L +F Q + 
Sbjct: 780 GKA-INIFDLLEKYEQKNEIINVLPFDYNDE---DLEIYYLTKFGLVKKTLLKEF-QGDY 834

Query: 671 SGKIAMKLDSR-DEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              I  K   + DEI++V+     +E DI++ ++ G C+RF  ++I    G+ + GV GI
Sbjct: 835 FITIGYKFRHKEDEIITVDFGKAHEEKDIIIISEKGMCIRFSKNSINP-VGKIASGVMGI 893

Query: 728 SLAKGDQV--------ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +L K D+V        I  +IVL      DE I  +K + +Q R   G+    + L  D 
Sbjct: 894 NLKKEDKVLYGFINTEIYKSIVLTFKEGKDEEIK-LKDIISQNRAGKGN----SILNADK 948

Query: 780 SVEG 783
            V+G
Sbjct: 949 GVDG 952


>gi|300854106|ref|YP_003779090.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300434221|gb|ADK13988.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 954

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 273/696 (39%), Positives = 394/696 (56%), Gaps = 60/696 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + I + M ++YL YA+ V   RA+PD+RDGLKPVHRRI++G   +    +K Y
Sbjct: 9   KDNNIIKIPIEEAMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRIIYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ +I+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPIIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ K  V+   NY GS +EP VL ARYPN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIEKGVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  VA IDN DI ++ LM  I+GPD PTG +I+G+  + +AY TG G + +R
Sbjct: 189 PHNLREVIDATVAYIDNRDITVEELMNYIKGPDLPTGGIIIGKKSMISAYETGEGKVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE PY+ +KA +L+ I+E+  +KR    +  I+D+RDESDR G
Sbjct: 249 AKTSIEKLDSGRLGIVITEFPYRRSKAKLLQVISEMTADKRYARALEPISDIRDESDRSG 308

Query: 308 YRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+      A  IL  L + T LQ   S NMVAL   KP    L  ILK +V +
Sbjct: 309 IRAVIEFKKSTDMKLAQKILKYLLKKTDLQCNISFNMVALGDGKPITMGLKLILKYYVEY 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++E++ +RTK  L +A+ R H++ G   A+  +DE+++ IR S + + A   LM++    
Sbjct: 369 QKEIITKRTKRELEEAKKRFHIVEGFIKALGIMDEIIKTIRSSKSKKDAASNLMEQF--- 425

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D +Y             Q  AILEL L RLTGL  D    E   L   I
Sbjct: 426 -----------DFTYP------------QAEAILELMLYRLTGLEIDSFEKEHEKLLKVI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------IVRED 537
           K+   IL S   +L +IK+EL+ V ++    RRT IVE     EDE         I+ ED
Sbjct: 463 KKLTKILESEKEILKVIKKELIEVGEKYGDDRRTAIVE-----EDEKAKIDVDEIIIDED 517

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V+T+S  GY+KR  L  Y   R  GK    +  R+ DF       ST  +++FF+  G 
Sbjct: 518 IVITMSKEGYIKRTSLKSY--NRSSGKVED-IEYREGDFNEYFINSSTKDTLMFFTDSGD 574

Query: 598 VYKEKVWRLPIGSPQARGKALINI-----LSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +Y+ +   +P    + +G+ L N+     L  N    + +I  F   +        VF T
Sbjct: 575 MYRIRGMDIPEFKWKEKGEKLDNLIKGIDLEKNHITAVYSIKDFNLQKD------FVFFT 628

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
             G ++R  +  F+  N +  +A+KL + ++++ VE
Sbjct: 629 SIGGIKRTGIESFVT-NYTKLMALKLKNGEKLIGVE 663


>gi|145633278|ref|ZP_01789009.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986124|gb|EDJ92714.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 620

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/651 (41%), Positives = 395/651 (60%), Gaps = 45/651 (6%)

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++E+PYQVNKA ++EKIAEL+REK+I  I+++ D S+++G R+ I++KR A  +V+LN L
Sbjct: 1   MSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEVVLNHL 60

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y  T +Q  F +NMVAL+  +P  F L  I++AFV  R EVV RR+ + L KAR+R H+L
Sbjct: 61  YSLTQMQVTFGINMVALDHGQPRLFNLKEIIEAFVLHRREVVTRRSIFELRKARERTHIL 120

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN-ASDIKDLIDLI---DDSSYTIGS 443
            GLA+A +N+DE++ IIR S N E A   +  RSW   SDI +L+D+    DD    +G 
Sbjct: 121 EGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENLGI 180

Query: 444 DGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            G  Y LS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  RL+ +I+
Sbjct: 181 QGEQYYLSPAQVNAILELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEVIR 240

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 241 EELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRG 300

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++NIL
Sbjct: 301 GKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRPIVNIL 360

Query: 623 SLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            L + ERIT I+P   + ED+      +V+ AT  G V++  L++F +   +G IA+ L 
Sbjct: 361 PLQENERITAILPVSAYEEDK------FVIMATADGIVKKIALTEFSRPRSNGIIALNLR 414

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI LA         
Sbjct: 415 DEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA--------- 464

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             L  D   DE                 + EEI+    +++++ NI +     +   E  
Sbjct: 465 --LTNDISDDESAV--------------EIEEISDDNAETALDLNIDKVVSLVVPKSEGA 508

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V + DQI+L++D 
Sbjct: 509 ILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLITDA 566

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           GTL+R  V+E+ I  R T+GV +  TA DE VVS+ER+ ++   DE +S E
Sbjct: 567 GTLVRTRVSEVGIVGRNTQGVRLIRTADDEHVVSLERVCDA---DEEDSLE 614


>gi|238855704|ref|ZP_04646001.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|260664459|ref|ZP_05865311.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932218|ref|ZP_06337665.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|313472143|ref|ZP_07812635.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|238831689|gb|EEQ24029.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|239529512|gb|EEQ68513.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|260561524|gb|EEX27496.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303668|gb|EFA95823.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
          Length = 826

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 273/719 (37%), Positives = 402/719 (55%), Gaps = 45/719 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K + K A+  G +MG +HPHG++
Sbjct: 24  YSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYDKPFKKAAKAVGNIMGNFHPHGDS 83

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 84  SIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTESRLSKISNHLLADIDKDTV 143

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL A++PN+LVNG  GI+ G AT IP HNL EV+D  + ++ +PD 
Sbjct: 144 NMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPHNLAEVIDATIYLLKHPDA 203

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L  LM+ ++GPDFPTGA++LG  GIK AY TGRG I +R  + I+     R+QIVVTEI
Sbjct: 204 SLADLMQFVKGPDFPTGAIVLGDKGIKEAYETGRGRIQVRSKTSIQDIKAGRQQIVVTEI 263

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  I+++RDE+DR G  +VIELK+GA +  ILN L++ T
Sbjct: 264 PFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELKKGADSQNILNYLFKST 323

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  +S NMVA++   P +  L  IL +++   E V+ +RT+Y L KA+ R  ++ GL 
Sbjct: 324 DLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDEAVITKRTQYDLKKAKARLEIIEGLI 383

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A+  ++++                             + 
Sbjct: 384 HALDILDDVIKTIRASKNKADAKNNIIEK--------------------------FSFTP 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    + ++ E + L  +I     +L+ R  L   I +EL +VK E
Sbjct: 418 RQAEAIVSLQLYRLTNTDVNALQAEKSDLEEKIANYNLLLTDRKVLEKQIIKELNAVKKE 477

Query: 512 LDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             + RRT+I      +E DE  +V  ED+ V VS  GY+KR  L  +++      G    
Sbjct: 478 FGSDRRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTDDSENG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   L L+  E+
Sbjct: 534 -LPDFDKVVFEKTMSTLTNLYLFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQ 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKL-DSRDEI 684
           I ++    + +   N    V AT  G +++  L+D IQ  R+ K    IAMKL      +
Sbjct: 593 IVSVFELAKLDEKLN---FVLATNDGYIKQLALAD-IQPTRTYKSRAMIAMKLKQDTSRV 648

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + VE    +   +I L T     VR+ IS I   +G  + GV+ ++L   D V+    V
Sbjct: 649 IHVEGVVPDTKKEITLFTNQAYAVRYDISEIPT-SGARAAGVKSVNLKDDDYVVDYVTV 706


>gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae
           ATCC 13813]
          Length = 819

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T  G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TSLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL S ++ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKSVEDYVVTVAPIQLEDVILVTYNGYALRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDSDHIVSAFI 698


>gi|145629330|ref|ZP_01785129.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978833|gb|EDJ88556.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 589

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/536 (45%), Positives = 348/536 (64%), Gaps = 15/536 (2%)

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A IDN +I +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R  + +E     
Sbjct: 1   MAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEAYRTGRGKVYVRARATVETNEKG 60

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ D S+++G R+ I++KR A  +V
Sbjct: 61  REQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEV 120

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +LN LY  T +Q  F +NMVAL+  +P  F L  I+++FV  R EVV RR+ + L KAR+
Sbjct: 121 VLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKARE 180

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN-ASDIKDLIDLI---DDSS 438
           R H+L GLA+A +N+DE++ IIR S N E A   +  RSW   SDI +L+D+    D+  
Sbjct: 181 RTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDIINLLDVSARPDELE 240

Query: 439 YTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             +G  G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  RL
Sbjct: 241 ENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERL 300

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y 
Sbjct: 301 MEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYE 360

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ 
Sbjct: 361 AQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRP 420

Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           ++NIL L + ERIT I+P   + ED+      +VV AT  G V++  L++F +   +G I
Sbjct: 421 IVNILPLQENERITAILPVSAYEEDK------FVVMATAGGIVKKIALTEFSRPRSNGII 474

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           A+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI LA
Sbjct: 475 ALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA 529


>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 540

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/393 (53%), Positives = 283/393 (72%), Gaps = 4/393 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K + KCA
Sbjct: 109 VVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCA 168

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+YDAL RMAQD+SLR  LI+G GNFGS+D DPPAA RYTECRL
Sbjct: 169 RVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPAAMRYTECRL 228

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      LL DL  DTVDF PN+D S +EP +L AR P +L+NG  GIAVGMATNIP HN
Sbjct: 229 EALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHN 288

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGRG I++RG +
Sbjct: 289 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGRGRIIVRGKT 348

Query: 255 HIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +E   +   R  +++ EIPYQ NKA+++EKIAELV  K +  ++D+RDESDR G R+VI
Sbjct: 349 EVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMRIVI 408

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG+   ++LN LYR T LQS FS NMV +   +P++  L  +L+A   FR  VV RR
Sbjct: 409 EVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDLLQA-SYFRCSVVERR 467

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            ++ L +A++R H++ G+ I + NLD V+RII+
Sbjct: 468 ARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIK 500


>gi|297571343|ref|YP_003697117.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931690|gb|ADH92498.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 804

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 276/748 (36%), Positives = 409/748 (54%), Gaps = 68/748 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +++EM+NS+L Y+ +VI  RA+PD RDGLKPV RRILF M  MG++ ++ +VK +
Sbjct: 9   IMDIDVSEEMRNSFLEYSYSVIYSRALPDARDGLKPVQRRILFQMDSMGLKPDRGHVKSS 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+ HPHG+AAIYDA+ R+AQD+SLRL  ++G GNFGS D D PAA RYTE R+
Sbjct: 69  RVVGDVMGRLHPHGDAAIYDAMVRLAQDFSLRLPFVDGHGNFGSPD-DGPAAPRYTEVRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +   LG+D VD  PNYD ++QEP VL A  P++LVNG  GIAVGMATN+  HNL
Sbjct: 128 APAALAMTASLGEDVVDMVPNYDNTYQEPEVLPAAIPSLLVNGSSGIAVGMATNMAPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G   +++NPD  L+ LM  I GPD P G  I+G  GI+ AY TGRG    R  +H
Sbjct: 188 NEVIAGARFLLENPDACLEELMRYIPGPDLPDGGKIVGIDGIRQAYKTGRGIFRTRATAH 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IE  S  ++ I+ TE+PY      ++EKI + V  K++  I+ +++ +DR  G R+V+E+
Sbjct: 248 IENVSPRKKGIIFTELPYLTGPEKIIEKIKDGVSSKKLQGISGVQNLTDRHHGTRLVVEV 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K   + + +L  LY++T L+  F +N VAL   +P    L  IL+ F+  R  V  RR +
Sbjct: 308 KNAFNPEAVLAALYQHTPLEESFGINNVALVEGQPRTMGLKEILQVFLDHRRSVTKRRCE 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+DR H++ GL IA+ ++D+V+ IIR S +  TA                LI + 
Sbjct: 368 FRLRKAQDRLHLVEGLLIAIVDIDDVIAIIRSSEDSATAANR-------------LISVF 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             LS+ Q   ILELRL RLT   + ++  E NSL   I E L IL S 
Sbjct: 415 D-------------LSQPQADYILELRLRRLTKFSQIELETERNSLQETIDELLAILGSE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-----------LLDMEDEDCIVREDMVVTVS 543
            R+  +I  EL  V  +  TPRRT ++E             L + D+ C       V +S
Sbjct: 462 DRMRQLISTELADVARQYGTPRRTVLLEADAVQKSKANAPKLKITDDPC------RVLLS 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R+ +     +R G + +        D +  +   +  + +   ++ G +++  V
Sbjct: 516 ATGKIARI-VGGEPPRREGPRAQ-------HDALASVVSTTNLSDIGVVTTAGNIHRLNV 567

Query: 604 WRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +P       +P  A G  L ++L +   E    I+   E ++      +  AT  G +
Sbjct: 568 LDIPAMPDTESAPSLAAGAQLTDLLLMEPNEEPLAIISLEESDT-----VLTLATAQGKI 622

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  L      N+S   A+ L   D ++        + I+L T   Q +RF  +A+R   
Sbjct: 623 KRVALD---PPNKSQFDAITLLDGDRVIGAGVSGDTDVIVLVTSDAQLLRFDANAVRP-Q 678

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
           GR+  G+ GI +A G QVI++ IV + D
Sbjct: 679 GRSGQGIAGIRVADGAQVIALGIVPNDD 706


>gi|302864518|ref|YP_003833155.1| DNA gyrase subunit A [Micromonospora aurantiaca ATCC 27029]
 gi|302567377|gb|ADL43579.1| DNA gyrase, A subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 1259

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/618 (40%), Positives = 373/618 (60%), Gaps = 37/618 (5%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TEC+L   A  +L D+ +DTVD + NYDG  +EP +L +R PN+L+NG  GIAVGMAT I
Sbjct: 562  TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 621

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+       +++P+ D    L+AL+EI++GPDFPT  +I+G+ GI++AY TGRG
Sbjct: 622  PPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQAGIQDAYRTGRG 681

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
            SI +R V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  R
Sbjct: 682  SIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGR 741

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  +
Sbjct: 742  TGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQ 801

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +IR SP  E AR           
Sbjct: 802  IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDAR----------- 850

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
              + LI L+D             + EVQ  AIL+++L RL  L R  I ++L  L +EI 
Sbjct: 851  --QGLIRLLD-------------IDEVQATAILDMQLRRLAALERQRILDDLAKLEVEIA 895

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+ +EL  +  +    RRT+IV    ++  ED I RED+VVT++  
Sbjct: 896  DLKDILAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSMEDLIAREDVVVTITRT 955

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + 
Sbjct: 956  GYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYE 1015

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  A+G+ + N+L+    E+I  I+  P  + +    Y+V ATK+G V++ +L +F
Sbjct: 1016 LPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQVA---PYLVLATKNGLVKKTRLEEF 1072

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
                  G IA+ L   DE++       E+D+LL +K  Q +RF  +  A+R   GR + G
Sbjct: 1073 DSNRSGGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPM-GRATSG 1131

Query: 724  VRGISLAKGDQVISMAIV 741
            V G+  +  D+++++ +V
Sbjct: 1132 VIGMRFSGEDELLAVEVV 1149



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/115 (60%), Positives = 89/115 (77%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M   G   ++ YVKC+
Sbjct: 27  IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  L++G GNFGS   DP AA RY
Sbjct: 87  RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY 141



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 761  QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            QRR++S +  EI +   D         +G +S E   +L  +E  ++T++  G+ KRT  
Sbjct: 907  QRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 963

Query: 815  YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
              +R   R GKG+    + + + +      F  + +D I+  ++KG + R    E+  AS
Sbjct: 964  DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 1020

Query: 875  RATKG 879
            R  KG
Sbjct: 1021 RVAKG 1025



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 539  VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594
            +V  +  G VK+  L  + + R GG     + +RDED +    +V+    +L  S    +
Sbjct: 1055 LVLATKNGLVKKTRLEEFDSNRSGGI--IAINLRDEDELVGAVLVAPEDDLLLVSKNAQA 1112

Query: 595  LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            + F   ++  R     P  R  + +  +  +  + +  +      E     L V+ AT  
Sbjct: 1113 IRFNATDEALR-----PMGRATSGVIGMRFSGEDELLAV------EVVREGLDVLVATNG 1161

Query: 655  GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
            G  +R  + ++    R GK    A   + R  ++       E+++   T  G  +R P+ 
Sbjct: 1162 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNGGVIRTPVK 1221

Query: 712  AIRVFAGRNSVGVRGISLAKGDQVISMA 739
             +R    RN++GV+ + L  G  ++++A
Sbjct: 1222 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 1249



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)

Query: 799  FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +++  ++ G  K+T   +F  SNRSG GI A ++   +E+   V V P    D ++LVS 
Sbjct: 1054 YLVLATKNGLVKKTRLEEFD-SNRSG-GIIAINLRDEDELVGAVLVAP---EDDLLLVSK 1108

Query: 859  KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
                IR    +  +R   RAT GV+    + ++ +++VE +RE
Sbjct: 1109 NAQAIRFNATDEALRPMGRATSGVIGMRFSGEDELLAVEVVRE 1151


>gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R]
 gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R]
          Length = 819

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/732 (36%), Positives = 408/732 (55%), Gaps = 42/732 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE R
Sbjct: 63  AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  +
Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSRT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 AIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+K
Sbjct: 303 KKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARSK 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 363 FDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL----------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              SY          SE Q  AI+ L+L RLT      +R E   L  +I     I+S  
Sbjct: 406 -KVSYE--------FSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR  
Sbjct: 457 RTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     R++D +  +    T   +L F++LG +    V  L     +
Sbjct: 517 PRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWK 571

Query: 613 ARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
             G+ L  N+++    E I  I     D+ +    + V  T  G ++   R ++S +   
Sbjct: 572 DVGEHLSQNLVNFASNEEI--IYAELVDDFTKETYFAV--TSLGQIKRFERQEISPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL S ++ +      Q  D++L T  G  +RF I+ + V  G  + GV+ ++
Sbjct: 628 KSKTAKYAKLKSVEDYVVTVAPIQLEDVILVTYNGYALRFSINDVPV-VGSKAAGVKAMN 686

Query: 729 LAKGDQVISMAI 740
           L   D ++S  I
Sbjct: 687 LKDRDHIVSAFI 698


>gi|256832646|ref|YP_003161373.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
 gi|256686177|gb|ACV09070.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
          Length = 828

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 281/744 (37%), Positives = 404/744 (54%), Gaps = 56/744 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +T EM+ S+L YA +VI  RA+PD RDG+KPV RRIL+ M  MG+  ++ +VKC+
Sbjct: 17  IIDVDVTAEMETSFLEYAYSVIYSRALPDARDGMKPVQRRILYMMADMGLRPDRGHVKCS 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIYDAL R+AQ +SLR+ L++G GNFGS+D D PAA RYTE RL
Sbjct: 77  RVVGEVMGKLHPHGDSAIYDALVRLAQSFSLRVPLVDGHGNFGSLD-DGPAAARYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A  +  DL +D VDF PNYD    +P VL A  P +LVNG  GIAVGMATN+  HNL
Sbjct: 136 AASALAMTADLDEDVVDFIPNYDNRLTQPDVLPAAIPALLVNGASGIAVGMATNLAPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     ++ +PD  LD LM  + GPD PTG  I+G  GI+ AY TGRGS   R  + 
Sbjct: 196 VEVISAARHLLAHPDATLDDLMRHVPGPDLPTGGRIVGLDGIREAYETGRGSFRTRATAQ 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           I   +  R  IV+TE+PY V    ++EKI E V  K++  I+++ D +DR+ G ++VIE+
Sbjct: 256 ITNVTSRRRGIVITELPYLVGPEKVIEKIKEGVTNKKLAGISNVTDLTDREHGLKLVIEV 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   D +L  LYRYT L+  F +N VAL   +P    L  +++ +V  R  V+ RR++
Sbjct: 316 KTGFDPDAVLEALYRYTPLEESFGINNVALVDGQPRTLGLRDMIQVWVNHRISVIRRRSE 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +  +R H++ GL  A+ ++DEV+ +IR S +  TAR  LM          D+ D  
Sbjct: 376 YRLKRRTERQHLVEGLLRAILDIDEVIDVIRTSDDSATARTRLM----------DVFD-- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSEVQ   ILELRL RLT   R ++  E + L  +I E  +IL   
Sbjct: 424 --------------LSEVQADYILELRLRRLTKFSRLELEKERDDLAAQIAELTEILGDE 469

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             L  ++ QE+  V     TPRRT +V  +G +         R    V  + L  +   P
Sbjct: 470 RVLHRLVSQEMADVARAHGTPRRTVLVTSDGSVSTSSAQPAPRRGAPVDPASL-QIADAP 528

Query: 553 LSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVL----FFSSLGFVYKEKVW 604
            +V  +   G   R    S +V  D+    D     T TSV       +S G V K +V 
Sbjct: 529 CTVVLSS-TGLLARTTDDSPLVADDQRSAHDALTSVTSTSVRGTIGALTSRGRVIKIQVV 587

Query: 605 RLPIGSPQ-------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            LP   P        A G  + +++ L   ER+  ++ F E         +   T  G V
Sbjct: 588 ELP-AIPSVDRSVSVAAGIPVTDLVELEGTERVIALVSFAEQAPP-----LAMGTAAGVV 641

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  +++  + +    I +K    DEI+    CT + D++  +   + +RF  S++R   
Sbjct: 642 KRVAMNEPPRADVFDAITLK--EGDEIVGAAHCTDDADLVFLSSDARLLRFTASSVRP-Q 698

Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741
           GR + G+ G+ LA G + +S +++
Sbjct: 699 GRAAGGMSGMKLAPGTRALSFSVI 722


>gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 828

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 277/753 (36%), Positives = 414/753 (54%), Gaps = 70/753 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  + I  + +++EM+ S+L YA +VI  RA+PD RDG+KPV RRIL+ M +MG+  ++
Sbjct: 10  EDLAEKIIDIDVSEEMRGSFLEYAYSVIYQRALPDARDGMKPVQRRILYQMNEMGLRHDR 69

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PPAAE 128
            +VKCAR+ G+VMG+ HPHG+ AIYDAL R++Q +++R+ L++G GNFGS+ GD  PAA 
Sbjct: 70  GHVKCARVVGDVMGRLHPHGDTAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDAPAAM 129

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL +AA  L+  + ++ VDFRPNYDG   EP VL A +PN+LVNG  GIAVGMAT
Sbjct: 130 RYTEARLDRAAEQLVASIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAVGMAT 189

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNLGEVV     +I +P+  L+ L E + GPD PTG  I+G  GI++AY +GRG+ 
Sbjct: 190 NMAPHNLGEVVAAARHLIAHPEATLEELTEFVPGPDLPTGGTIVGLDGIRDAYRSGRGTF 249

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             R    IEK S  R  +VVTE+PY V    ++ +I ELV+ K++  I+DL+D +DR QG
Sbjct: 250 KTRATVSIEKVSARRTGLVVTELPYSVGPEKVISRIKELVQSKKLQGISDLKDLTDRTQG 309

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELK G + + +L +LYR T ++  F +N VAL   +P+   L  +L+ +V  R +
Sbjct: 310 LRLVIELKNGFNPEAVLEELYRLTPMEESFGINNVALVDGQPQTLGLRELLEVYVNHRLD 369

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+++   K ++R H++ GL +A+ ++D V+ +IR + +   AR  LM         
Sbjct: 370 VVRRRSEFRRAKRQERLHLVDGLLVALLDIDRVISLIREAEDTAAARESLM--------- 420

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                            G   LSE+Q R ILE  L RLT   R ++  E + L  E+   
Sbjct: 421 -----------------GAYDLSEIQARYILETPLRRLTRFDRMELETERDKLNKEVDAL 463

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------LLDMEDEDCIVREDM 538
             +L S  +L  ++ +E+  V  E  TPRRT++ E           L+M D+ C V   +
Sbjct: 464 TAVLESDKKLRRLVSKEMGDVAKEFATPRRTQLRESDGVARSAVIPLEMADQPCHV---L 520

Query: 539 VVTVSHLGYVK--RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +     +G  K   VP  VY   R              D V      ++ ++V   + LG
Sbjct: 521 MGVHGAIGRSKGPSVP-RVYEGLR-----------TRHDAVHVSVPTTSRSAVGLVTDLG 568

Query: 597 FVYKEKVWRLP-------IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + +  V  LP          P A G  +   + L+  ER+ +++    D S        
Sbjct: 569 RMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVVSM--DASGPG---FA 623

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRF 708
             T+ G V+R  +S     N+     + L   D ++ V +  T E D+   T   Q +RF
Sbjct: 624 LGTRGGVVKR--VSPDYPPNKDDFEVVALKDDDRVVGVTQLSTGEEDLAFITSEAQLLRF 681

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             SA+R   GR + GV G+ L++G +V+    V
Sbjct: 682 SASAVRP-QGRPAGGVAGVRLSEGARVLWFGAV 713


>gi|73916130|gb|AAZ92933.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 632

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 257/690 (37%), Positives = 396/690 (57%), Gaps = 85/690 (12%)

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  + IE T   RE
Sbjct: 5   VMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRE 64

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VIL
Sbjct: 65  RIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVIL 124

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT++   KA  RA
Sbjct: 125 NNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARA 184

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+RIIR S     A+ ELM +                        
Sbjct: 185 HILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------------------ 220

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL+   R+  IIK E
Sbjct: 221 --FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDE 278

Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG
Sbjct: 279 LDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGG 338

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     A+G  ++N+L 
Sbjct: 339 RGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK 398

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE
Sbjct: 399 LDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDE 456

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +GD V+  +++  
Sbjct: 457 LINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLI-- 513

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              D DE                                                 +L +
Sbjct: 514 --TDQDE-------------------------------------------------VLII 522

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  ++ +++++D G +I
Sbjct: 523 TEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMI 580

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           R  +  I    RAT GV +    +D ++V+
Sbjct: 581 RTNLANISQTGRATMGVKVMRLDQDAQIVT 610



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    + +D ++  ++K
Sbjct: 314 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 370

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906
           G + R+   EI    R  KG+ + +  K   DE + +V  + ES+  D+A
Sbjct: 371 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 419


>gi|81300503|ref|YP_400711.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
 gi|81169384|gb|ABB57724.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
          Length = 858

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 268/739 (36%), Positives = 404/739 (54%), Gaps = 90/739 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ + K A
Sbjct: 13  ILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFRKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+D DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTETRL 132

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  LL+++G++TVDF  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD  +A+ID P +    L+  + GPDFPTG  ++G  GI +AY  GRGSI +RG++
Sbjct: 193 LGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIPVRGIA 252

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE     K    R  I+VTE+PYQV+KA  +EK+A+LV + ++  IAD+RDESDR+G R
Sbjct: 253 RIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R A AD +L QLY+ T+LQS F   ++A+   +P++ +L  +L+ F++FRE  +
Sbjct: 313 VVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSFREGTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  + L +   R  +L GL  ++++LD ++ I+R SP+  TAR  L Q  ++      
Sbjct: 373 RRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARL-QVHFD------ 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  A+L + + R+T L ++ ++ E  +L  +      
Sbjct: 426 -------------------LNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQT 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--------------------------- 522
           +L  R  LL  +K++L  +K    +PRRTR+ E                           
Sbjct: 467 LLGDRPTLLKALKKDLRDLKRRFGSPRRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATA 526

Query: 523 -----GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY-RAQRRGG---------KGRS 567
                 L+     D  V +   V      + +   L +  R Q +           K +S
Sbjct: 527 GPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKS 586

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL---PIGSPQARGKALINILSL 624
           G   R  DF   L        +L  ++ G  Y+  +  +   PI +    G+    I + 
Sbjct: 587 GAQERT-DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPGPIANLLPTGRQSTAIAA- 644

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                 T ++P   +E S     ++  +  G V+R  L++  +I+  G   +KL   + I
Sbjct: 645 ------TLLLPLASEERS-----LLLLSSQGRVKRLALTELAEISNRGLQLLKLAEEEII 693

Query: 685 LSVETCTQENDILLTTKLG 703
            +   C  + ++LL +  G
Sbjct: 694 QAACLCAPQQEVLLGSSGG 712


>gi|290890538|ref|ZP_06553613.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
 gi|290479934|gb|EFD88583.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
          Length = 811

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 408/738 (55%), Gaps = 38/738 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  +   Y
Sbjct: 3   DESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG YHPHG+++IYDAL RM+Q+W +R  LI+  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L DL +  VD   N+D +  EP VL +R PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++  + ++ +P   L+ LM+ + GPDFPTG +I G  GIKNAY TGRG + +R
Sbjct: 183 PHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKVYLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    ++QI +TE+PY+VNK+ ++ +I E+   K +  I ++RD++ R+G  + 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+A+ IL+ L++ T LQ  ++ NM A+N  +P    L   L AF+ FR+EV+ R
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKEVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA+ R  ++ GL   ++ LDEVV  IR S + + A+  L+++           
Sbjct: 363 RTEFELKKAQARQEIVEGLIKMLSILDEVVATIRASESRKNAKENLIKK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S+ Q  AI+ L+L RLT      ++NE + L  +I E   IL
Sbjct: 412 ---------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
                L  +++ EL  ++ +   PRR++I   +  L ++    I  ED++V ++  GY K
Sbjct: 457 KETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+A    G       + D+D+   L  V+T +S+  F++ G +   +V+ L   
Sbjct: 517 RASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADT 569

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   +S L + E +  +  F + + +   ++         V +N L+     
Sbjct: 570 KWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYY 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +    A+ +  ++ ++SV     +N  +++ T+ G   +FPI  I +   ++S G +  
Sbjct: 630 KKRASKAIAIKGKNVLVSVTFAASQNHLVVMATQKGYLYKFPIGEIALMTAKSS-GAKPA 688

Query: 728 SLAKGDQVISMAIVLHAD 745
            ++K D+++SM ++   D
Sbjct: 689 KISKKDRIVSMDLIDSED 706


>gi|259129711|gb|ACV95365.1| topoisomerase II subunit A [Brucella melitensis]
          Length = 292

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 246/292 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQ
Sbjct: 181 ELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           VNKA+M+EK+AEL R+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+LNQ
Sbjct: 241 VNKASMIEKMAELARDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQ 292


>gi|315655460|ref|ZP_07908360.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490400|gb|EFU80025.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 845

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 302/790 (38%), Positives = 420/790 (53%), Gaps = 104/790 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD   E+ I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  
Sbjct: 2   SDSSLER-IQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTP 60

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA
Sbjct: 61  DKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAA 119

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMA
Sbjct: 120 ARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMA 179

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY TGRG 
Sbjct: 180 TNIPPHNVGETINAAIYLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYETGRGI 239

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
            + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR  
Sbjct: 240 FITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTH 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R 
Sbjct: 300 GMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRV 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM        
Sbjct: 360 EVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLM-------- 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                              T++ LSE Q   ILELRL RLT   R ++  E + L   I 
Sbjct: 412 -------------------TVFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIA 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   IL+S  +L  +++ ++      L TPRRT ++E     ED   +   +D  + V  
Sbjct: 453 ELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLE-----EDGSAVAASKDAALPVLG 507

Query: 545 LGYVKRVPLSVYRAQRR---GGKGR------SGVVMRDEDFVTDLF-IVSTHTSVLF--F 592
              V  VPL V  A  R   G  GR      +G V R E F + +   + THT   F   
Sbjct: 508 TMTVSDVPLEVPDAPCRIVLGADGRAIRLANTGPVNRLEGFNSTIAGSILTHTRGCFGVV 567

Query: 593 SSLGFVYKEKVWRLPI-----------------------------------------GSP 611
           +S GFV +  V  LP                                          G+P
Sbjct: 568 TSSGFVVRLDVLSLPPGEKSSLADSAAGASSAAAAGSTETADIELNLSESAPPWSFDGAP 627

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q    A         GE +  I+   EDE+      V   T HG V+R +  D+      
Sbjct: 628 QLSAAA-----RFEDGETVVGILTLDEDET------VGMMTAHGIVKRMR-PDYPSTQDR 675

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             I + LD  D+++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +
Sbjct: 676 FSI-INLDGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKE 733

Query: 732 GDQVISMAIV 741
             QVI+ AIV
Sbjct: 734 HTQVIAGAIV 743


>gi|256851123|ref|ZP_05556512.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660547|ref|ZP_05861462.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932238|ref|ZP_06337682.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297205988|ref|ZP_06923383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256616185|gb|EEU21373.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548269|gb|EEX24244.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303633|gb|EFA95791.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297149114|gb|EFH29412.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 826

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 275/720 (38%), Positives = 409/720 (56%), Gaps = 45/720 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K + K A+  G +MG +HPHG++
Sbjct: 24  YSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFDKPFKKAAKAVGNIMGNFHPHGDS 83

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL K ++ LL D+ KDTV
Sbjct: 84  SIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRYTESRLSKISNHLLADIDKDTV 143

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +   N+D +  EP VL A++PN+LVNG  GI+ G AT IP HNL EV+D  + ++ +P+ 
Sbjct: 144 NMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEIPPHNLAEVIDATIYLLKHPNA 203

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L  LM+ ++GPDFPTGA++LG  GIK AY +GRG I +R  + I+     R+QIVVTEI
Sbjct: 204 SLADLMQFVKGPDFPTGAIVLGDKGIKEAYESGRGRIQVRAKTSIQDIKAGRQQIVVTEI 263

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P+ VNKA +++KI E+   K I  I+++RDE+DR G  +VIELK+GA +  ILN L++ T
Sbjct: 264 PFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELKKGADSQNILNYLFKST 323

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQ  +S NMVA++   P +  L  IL +++    +V+ +RTKY L+KA+ R  ++ GL 
Sbjct: 324 DLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDADVITKRTKYDLSKAKARLEIIEGLI 383

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  LD+V++ IR S N   A+                 ++ID  S+T           
Sbjct: 384 HALDILDDVIKTIRASKNKADAKN----------------NIIDKFSFT----------P 417

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI+ L+L RLT    + ++ E + L  +I     +L+ R  L   I +EL +VK E
Sbjct: 418 RQAEAIVSLQLYRLTNTDVNALQAEKSDLEEKIASYDLLLTDRKVLEKQIIKELNAVKKE 477

Query: 512 LDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             + RRT+I      +E DE  +V  ED+ V VS  GY+KR  L  +++      G    
Sbjct: 478 FGSERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENG---- 533

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + D D V     +ST T++  F++ G V    V  L     +  G+ L   L L+  E+
Sbjct: 534 -LPDFDKVVFEKTMSTLTNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQ 592

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKL-DSRDEI 684
           I  +    + +S  N L    AT  G +++  L+D IQ  R+ K    IAMKL ++   +
Sbjct: 593 IIAVFELAKLDSRLNFL---LATNDGYIKQLALAD-IQPTRTYKSRAMIAMKLKETASRV 648

Query: 685 LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + VE  + +   +I L T     VR+ ++ I   +G  + GV+ ++L   D V+    VL
Sbjct: 649 VRVEMISPDTKKEITLFTNHAYAVRYDVNEIPT-SGARAAGVKSVNLKDDDFVVDYVTVL 707


>gi|116491057|ref|YP_810601.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
 gi|116091782|gb|ABJ56936.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
          Length = 811

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 408/738 (55%), Gaps = 38/738 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  +   Y
Sbjct: 3   DESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG YHPHG+++IYDAL RM+Q+W +R  LI+  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L DL +  VD   N+D +  EP VL +R PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++  + ++ +P   L+ LM+ + GPDFPTG +I G  GIKNAY TGRG + +R
Sbjct: 183 PHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKVYLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    ++QI +TE+PY+VNK+ ++ +I E+   K +  I ++RD++ R+G  + 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+A+ IL+ L++ T LQ  ++ NM A+N  +P    L   L AF+ FR+EV+ R
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKEVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA+ R  ++ GL   ++ LDEVV  IR S + + A+  L+++           
Sbjct: 363 RTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S+ Q  AI+ L+L RLT      ++NE + L  +I E   IL
Sbjct: 412 ---------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
                L  +++ EL  ++ +   PRR++I   +  L ++    I  ED++V ++  GY K
Sbjct: 457 KETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+A    G       + D+D+   L  V+T +S+  F++ G +   +V+ L   
Sbjct: 517 RASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADT 569

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   +S L + E +  +  F + + +   ++         V +N L+     
Sbjct: 570 KWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYY 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +    A+ +  ++ ++SV     +N  +++ T+ G   +FPI  I +   ++S G +  
Sbjct: 630 KKRASKAIAIKGKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGEIALMTAKSS-GAKPA 688

Query: 728 SLAKGDQVISMAIVLHAD 745
            ++K D+++SM ++   D
Sbjct: 689 KISKKDRIVSMDLIDSED 706


>gi|163841149|ref|YP_001625554.1| DNA topoisomerase IV subunit A [Renibacterium salmoninarum ATCC
           33209]
 gi|162954625|gb|ABY24140.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 851

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 283/760 (37%), Positives = 411/760 (54%), Gaps = 82/760 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +VK A
Sbjct: 19  IIDIDVSQEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLHPDRGHVKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D  P AA RYTE RL
Sbjct: 79  RVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLDAGP-AAPRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 138 AAAALTLTDHLDEDVVDFVPNYDNQLTQPEVLPAAFPNLLVNGATGIAVGMATNMAPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+     +I +P++ LD +M  + GPD PTG  I+G  GI+ AY TGRGS   R    
Sbjct: 198 VEVISAARHLIAHPEVTLDDVMRFVPGPDLPTGGRIVGLDGIREAYETGRGSFKTRAKID 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           +E+ +  R  +VVTE+PY V+   ++EKI + V  K++  I+D+ D +DR  G R+VIEL
Sbjct: 258 VEQLTARRTGLVVTELPYTVSPEKVIEKIKDGVNAKKLQGISDIVDLTDRNHGLRLVIEL 317

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G +   I+ QLY+ T ++  F +N V L   +P+   L+ +L+ +VA R +VV RRT 
Sbjct: 318 KNGFNPQAIIQQLYKLTPMEDSFGINNVTLVDGQPKTLGLLELLRVYVAHRIDVVRRRTA 377

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ G+ IA+ ++DEV++IIR S     AR  L+        I D     
Sbjct: 378 FRLGKKKDRLHLVEGMLIAILDIDEVIQIIRTSEETAAARDRLIA-------IYD----- 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q   ILELRL +LT   R ++  E + L  EI+E   IL+S 
Sbjct: 426 --------------LSEIQANYILELRLRQLTKYSRIELEKEQDELRKEIEELERILNSE 471

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-----------------------LLDMEDED 531
             L  ++  EL  + ++  TPRRT ++E                         L++ D+ 
Sbjct: 472 PVLRELVSSELAEIAEKYGTPRRTVLLESEAVSPTVAKALAAATTPGKATPLALEIADDP 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
           C       V +S  G + R          R     SG   +  D    +   S    V  
Sbjct: 532 CW------VLLSSSGQIART-------STREALSDSGARTK-HDVFKSVIATSARGEVGA 577

Query: 592 FSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNN 645
            +S G + + +V  +P+  P       A G      ++L +GE + + +P         +
Sbjct: 578 VTSAGRMLRLQVLDMPVLPPTAGLPNLAGGVPAKEFITLLKGESLISFVPI--------D 629

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             V   TK G V+R  ++    +NR     + L  +D +++      +++++  T+  Q 
Sbjct: 630 AVVALGTKQGIVKR--VTPEYPLNREDWEIISLKDKDSVVAAAAAQDDDELVFITEQAQL 687

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +RF  +A+R   GR + G+ GI LA  D V+S A+V   D
Sbjct: 688 LRFSATAVRP-QGRTAGGMAGIKLASNDVVLSFAVVAAGD 726


>gi|166030881|ref|ZP_02233710.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
 gi|166029148|gb|EDR47905.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
          Length = 746

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/715 (36%), Positives = 405/715 (56%), Gaps = 27/715 (3%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y KCARI G+ MGK
Sbjct: 15  MKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGK 74

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+++IYDAL  MAQ++   + L++G GNFGS++GD  AA RYTE RL K      L
Sbjct: 75  YHPHGDSSIYDALVVMAQEFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLAKITQEAYL 134

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ VDF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+IP HNL EV+D   
Sbjct: 135 ADLDKNIVDFMPNFDETEKEPEVLPVRVPNLLINGADGIAVGMATSIPPHNLAEVIDAVE 194

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + + DI    LM+ I+GPDFPTG +++ +  +   Y +G G I +RG   +E+  G +
Sbjct: 195 AYMKHEDISTKQLMKCIKGPDFPTGGIVVNKDDLLEIYESGAGKIKVRGKVEVEEMKGGK 254

Query: 264 EQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           +++V+TEIPY +  A +   L  +  LV  K+  DI D+ + S ++G R+VIELK+GA  
Sbjct: 255 KRLVITEIPYTMIGAGIGKFLNDVCALVETKKTNDIVDISNMSSKEGIRIVIELKKGADV 314

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+  R+ K LL K 
Sbjct: 315 ENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKKIIEHHVDFQFELATRKYKTLLAKE 374

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           RDR  +  GL  A   +D ++ I+R S +   AR  L Q       I + I      S  
Sbjct: 375 RDRKEIQEGLIKACDVIDLIIEILRGSQSVADARACLTQ------GITENIKFKSGISRK 428

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           + +   +  +E Q  AILE+RL +L GL  + +  E       I    DIL++   +  +
Sbjct: 429 MAA--MLRFTERQANAILEMRLYKLIGLEIEALMKEHEETLKNIARYEDILNNYDSMAEV 486

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I ++L   K E    RRT +  G   + +E  +  +++V  +   GY K V ++ Y   +
Sbjct: 487 IIEDLEHFKKEYARKRRTVVENGQEAVYEEKKVEEQEVVFLMDRFGYAKTVDVATYERNK 546

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                 +  ++           ++T   +  F++ G +++ KV  LP G  + +G+ + N
Sbjct: 547 EAADAENKWIVN---------CINT-GKLCVFTNTGKMHQIKVLDLPYGKFRDKGQPIDN 596

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           + + +  + +   M    DE       ++FATK G +++ K ++F Q+ +    A KL  
Sbjct: 597 VSNYDSTQEMVVYMC---DELQLRYAKLLFATKQGMIKKVKGNEF-QVAKRTIAATKLQE 652

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            DE++SV+  T +  ++L TK G  +RF    +     + +VGVRGI L K D++
Sbjct: 653 DDELISVQVITDDQHVVLQTKDGYFLRFSAQEV-AEKKKAAVGVRGIKLRKNDEL 706


>gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
 gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
          Length = 956

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 314/903 (34%), Positives = 475/903 (52%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I +  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQ ++ R+ +I+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKNSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+  + DV+   L  LY+ T LQS  S NMVAL   KP+   L  +LK +V  
Sbjct: 309 TRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVALAEGKPKTLGLKAMLKYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EVV R+TK  L  A  R H++ G   A+  +DE+++ IR S + + AR  LM++    
Sbjct: 369 QKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDIQAEAILELMLYKLTGLEIVAFEKEYKELEKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------IVRED 537
            +   ILSS   LL +IK+EL+ VK+  +  RRT I+E     +DE         IV ED
Sbjct: 463 NKLKKILSSEKELLKVIKKELIEVKETYNDKRRTSIIE-----DDEKAKIDIEEIIVEED 517

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G 
Sbjct: 518 VVVTLSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGN 574

Query: 598 VYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +Y+ KV  +P    + +G  L  I+ +++  E  T I  F  D+ +     ++F T  G 
Sbjct: 575 MYQIKVINIPEFKWKEKGVKLDEIIKTIDLSE--TIIEAFSIDDFTAQK-DMLFITDSGY 631

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIR 714
           +++  L  F   N +  +A+KL   + +L  +    T+E       K  + + F I    
Sbjct: 632 MKKTTLDKF-NTNYTKIMALKLKKEESLLKADLVDRTREEK-FFNIKTQKGLSFNIEEPS 689

Query: 715 VFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-- 771
           + A  RN VG +   +   D   S+  V   D +Y+ +  Y+ ++S    +   D +E  
Sbjct: 690 LEAVDRNIVGYKLFDILPND---SIKQVDFCD-NYEYKSFYV-NISKDGLITISDLKENK 744

Query: 772 -ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              SL  DSS                +  +L  SE   GK      F + N   KGI  +
Sbjct: 745 SHVSLFTDSS----------------KTIVLFDSE---GKAYYIPAFMLQNIKEKGINIS 785

Query: 831 DVS--KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             +  KI+ + A ++ F   ++  I  +S KG + R  ++E++I   + + V  F    D
Sbjct: 786 AFTGDKISLLNA-ISTFRFEEDISIYFISKKGLIKRTVLSELKIEGNSAQ-VYKFKDKGD 843

Query: 889 ERV 891
           E V
Sbjct: 844 ELV 846



 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%)

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-----TIM 634
           LF  S+ T VLF S      + K + +P    Q   +  INI +   G++I+     +  
Sbjct: 749 LFTDSSKTIVLFDS------EGKAYYIPAFMLQNIKEKGINISAFT-GDKISLLNAISTF 801

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQ 692
            F ED S      + F +K G ++R  LS+      S ++    D  DE++S+  +   +
Sbjct: 802 RFEEDIS------IYFISKKGLIKRTVLSELKIEGNSAQVYKFKDKGDELVSILIKEHGE 855

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           E +I++ T+    +RF   A+    G+ + GV GISL   D+VI   I+   D 
Sbjct: 856 EKNIIIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILALIIDENDT 908


>gi|296129539|ref|YP_003636789.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021354|gb|ADG74590.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 826

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 285/754 (37%), Positives = 404/754 (53%), Gaps = 74/754 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +T EM+ S+L YA +VI  RA+PD RDGLKPV RRI++ M  MG+  ++ YVK A
Sbjct: 19  IVDVDVTTEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMADMGLRPDRPYVKSA 78

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIYDA+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE R+
Sbjct: 79  RVVGEVMGKLHPHGDSAIYDAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTEARM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +   L +D VDF PNYD   Q+P VL A  PN+LVNG  GIAVGMATN+  HNL
Sbjct: 138 APAAVAMTQGLDEDVVDFVPNYDNKLQQPGVLPAAIPNLLVNGATGIAVGMATNMAPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ +PD  L+ LM  + GPD PTG  I+G  G+++AY TGRG+   R  + 
Sbjct: 198 VEVVAAARHLVAHPDATLEDLMRFVPGPDLPTGGKIVGLDGVRDAYRTGRGAFRTRATAR 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E  +  R+ IVVTE+PY V    ++EKI E V+ K++  I+D+ D +DRQ G R+VIE+
Sbjct: 258 VENVTPRRKGIVVTELPYTVGPEKVIEKIKEGVQSKKLSGISDVVDLTDRQHGLRLVIEV 317

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QLYR+T L+  FSVN VAL   +P    L+ +L+ +V  R EVV RRT 
Sbjct: 318 KTGFHPEAVLEQLYRHTPLEDSFSVNNVALVDGQPRTLGLVDLLRVWVDHRLEVVRRRTS 377

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L K ++R H++ GL IA+ ++DEV+++IR S + +TAR  L          + + D  
Sbjct: 378 YRLTKRQERLHLVEGLLIAILDIDEVIQVIRTSDDADTARGRL----------RSVFD-- 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q   ILELRL RLT   R ++  E + L  EI     IL+  
Sbjct: 426 --------------LSEPQAEYILELRLRRLTRFSRIELERERDELTDEIARLQAILADD 471

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE---------------------GLLDMEDEDCI 533
             L  +   E+  V     TPRRT ++E                       L++ D  C 
Sbjct: 472 GLLRTVTSDEMAEVAATYGTPRRTVLLEHAGGAGLAGAAGAPTSSKGAAAPLEIPDTPCW 531

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                   +S  G + R    V     RG     G V    D V      +    +   +
Sbjct: 532 ------ALLSATGLLARTGEDVEPV--RG----DGTVRSRHDVVASAVSTTARADIGALT 579

Query: 594 SLGFVYKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLY 647
           S G V +  V  LP      G P   G   +   ++L +GE +  ++P  +D        
Sbjct: 580 SAGRVVRLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVPLGDDAPP----- 634

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   T  G V+R    D +  NR    A+ L   D+++       E++++L +     + 
Sbjct: 635 LALGTAQGVVKRVAAGD-VPANRDAWEAISLKDGDQVVGAALARDEDELVLVSSDSSLLH 693

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           FP + +R   GR++ G+ GI LA G +V++  +V
Sbjct: 694 FPGAQVRP-QGRSAGGMAGIKLAAGARVVAFGVV 726


>gi|284050490|ref|ZP_06380700.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 451

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/477 (48%), Positives = 315/477 (66%), Gaps = 32/477 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ G+V+GKYHPHG+ ++
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQSV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGKDTVD 152
           YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL    +  LL  +G+ TVD
Sbjct: 61  YDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLATIGNEGLLTQVGEATVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+D S QEP VL A+ P +++NG  GIAVGMATNIP HNLGEVVDG +A+IDNPD+ 
Sbjct: 121 FTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHNLGEVVDGLIALIDNPDLC 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK--TSG---DREQIV 267
              LM++I GPDFPTG  I+   GIK AY +GRGSIV+RGV+ IE+  TSG    +  IV
Sbjct: 181 DQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGVAKIEQVPTSGRKRTKNAIV 240

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G RVVIELKR A+ +V+L+ L
Sbjct: 241 VTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIRVVIELKREATPEVVLHNL 300

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y++T L S F    +AL   +P + +L  IL+ F+ FRE+ ++RR +  L  A  R H++
Sbjct: 301 YQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQTLLRRYRSELEIAERREHLV 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL  A++ LDEV+ I+R +P+  +A+  L  R                          +
Sbjct: 361 GGLLKALSALDEVIDILRNAPDGSSAKMSLETR--------------------------L 394

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
             S  Q  AIL + L RLTGL    ++ E   L  +I+    +LS RS LL  +K+E
Sbjct: 395 DFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLKKE 451


>gi|262189909|ref|ZP_06048228.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
 gi|262034207|gb|EEY52628.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
          Length = 653

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/684 (37%), Positives = 384/684 (56%), Gaps = 94/684 (13%)

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R
Sbjct: 1   MRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR 60

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV
Sbjct: 61  IVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVV 120

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  
Sbjct: 121 TRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAA 180

Query: 430 LIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++            +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L
Sbjct: 181 MLERAGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQL 239

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VV
Sbjct: 240 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVV 299

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+
Sbjct: 300 TLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYR 359

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++ 
Sbjct: 360 MKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE---FSKDKFIFMATGDGTVKKT 416

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------ 708
            L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF            
Sbjct: 417 SLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN 476

Query: 709 --PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
             P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D        
Sbjct: 477 GQPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD-------- 526

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                       +LTV+E G+GKRTS  
Sbjct: 527 --------------------------------------------VLTVTENGYGKRTSLS 542

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R
Sbjct: 543 EYPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGR 600

Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899
            T+GV +  T++ E VV ++RI E
Sbjct: 601 NTQGVTLIRTSEGESVVGLQRIDE 624


>gi|159902545|ref|YP_001549889.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887721|gb|ABX07935.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 828

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 274/802 (34%), Positives = 442/802 (55%), Gaps = 71/802 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + ++S+  EMQ SYL YA++VI+GRA+PD RDG+KPV RRIL+ M ++G+   + + 
Sbjct: 2   EERLQAISLHHEMQRSYLEYAMSVIVGRALPDARDGMKPVQRRILYAMHELGLTPERPFK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  +++G GNFGSVD DPPAA RYTE
Sbjct: 62  KCARVVGDVLGKYHPHGDQAVYDALVRLVQSFASRYPVLDGHGNFGSVDDDPPAAMRYTE 121

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A+  +L +LG +TV+F PN+D S QEP+VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 122 TRLAAIAYEAMLGELGSNTVEFAPNFDSSQQEPIVLPAQLPFLILNGCSGIAVGMATSIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++  + +I  P+I  + L+ II GPDFPTG  +L  TG+K  Y  G+GSI +R
Sbjct: 182 PHNINEVINALIEIIKKPNISEERLLSIIPGPDFPTGGEVLIGTGVKETYLKGKGSIPMR 241

Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE     K    +  I++TE+PYQ++K+  +EK+AE+V   ++  IAD+RDESDR+
Sbjct: 242 GIAHIEEINPGKGKHKKNAIIITELPYQISKSNWIEKLAEMVNNGKVEGIADIRDESDRE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R ++ + ILN LY+ TSLQS F   ++A+   +P++ +L   L  F+ FRE
Sbjct: 302 GMRIVVELRRDSNPEKILNTLYQRTSLQSNFGATLLAIVNGQPKQLSLKKFLDIFLEFRE 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRTK  L K  +R  ++ GL  A+ N+  V+ +I  + +   AR  LM R      
Sbjct: 362 LTIIRRTKNNLLKTLERLEIVEGLLKALENVRNVIDMIESAKDAMEARTRLMVR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q   IL + L RLT L    + NEL  L  E K 
Sbjct: 416 --------------------LDLTEKQADGILSMPLRRLTNLETQSLYNELEELK-EKKS 454

Query: 487 CLDI-LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           CL+I L+ R  LL  + +EL  ++ +  + R+T+++EG     DE    R   +   + L
Sbjct: 455 CLEIVLNDRDELLKAMIEELKGLRKQFGSKRKTKLIEG----GDELLAQRNASLRPNAEL 510

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI------------------VSTHT 587
              K+   ++ R  R   +  + V +     +  L +                  +  + 
Sbjct: 511 QR-KKAYENLPRESRLMIQNDNQVKIVSPQLLGRLHLDESCNLGDAPIPARLIWPIEKNP 569

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V+  ++ G +   K W      P    K +  IL   + E+I++I+P  +D+     L 
Sbjct: 570 KVIVVTNCGKIALVK-WEFSGNQPGIIQKFIPTIL---EKEKISSIIPIGKDKE----LS 621

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   T  G  +R  + + + ++      +KL     + S   C   + +++ + +G+ ++
Sbjct: 622 IGLLTSDGRFKRLDIEEIVDMSGRAASLLKLKENVNLQSGLICRLNDYLIIVSDIGRILK 681

Query: 708 FPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADY---DERICYMKH-MSAQR 762
             I    +   G+ + G   + L  G+++I  AI   +  D     ++   +KH +++ R
Sbjct: 682 IKIDDENIPIMGKLAQGSVIMKLFPGERIIG-AITCSSKEDLIMITKKGSILKHSINSIR 740

Query: 763 RLISGDTEEITSLKNDSSVEGN 784
               GD   I ++  DS+ E N
Sbjct: 741 TCKRGDLGTIKNILKDSNKEQN 762


>gi|313123650|ref|YP_004033909.1| DNA topoisomerase iv subunit a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280213|gb|ADQ60932.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 827

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/749 (36%), Positives = 418/749 (55%), Gaps = 47/749 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K 
Sbjct: 3   ETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I +
Sbjct: 183 PPHNLGEVLDATIHLLKHPDTSLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV 
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+            
Sbjct: 363 KRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L  +I     I
Sbjct: 411 --------------AEFAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYV 548
           L+    L   I +EL +VK E  + RR+ I +    +E DE  ++ E+ V V +S  GY+
Sbjct: 457 LADPKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L  
Sbjct: 517 KRSSMRSFQSTEAGDNG-----LPETDQVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L   E I  +  F  +     NL  + AT  G +++  L+D +Q 
Sbjct: 572 SKWKDVGQHLSQELGLAADESIIRV--FALEALDDPNLAFLLATNDGFIKQVALAD-LQP 628

Query: 669 NRSGK----IAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            R+ K    +AMK+   DSR   + +   +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIDEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750
            GV+ I+L + D V++    L  D  Y++
Sbjct: 688 AGVKSINLKEDDYVVA---CLVTDPQYED 713


>gi|73662712|ref|YP_301493.1| DNA topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495227|dbj|BAE18548.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 800

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 263/731 (35%), Positives = 421/731 (57%), Gaps = 45/731 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++Q W L  +LIE QGN GS+D DP AA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SRISEELLRDINKETVPFMPNYDDTTLEPMVLPARLPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY TG+G I++R    
Sbjct: 185 GEVIQATLKFIDNPDITVAQLMKYVKGPDFPTGGIIQGIDGIKKAYETGKGKIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q++VTE+PY+VNK+++++K+ EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 DEELRNGRKQLIVTEVPYEVNKSSLVKKMDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ +LN LY+ T LQ  ++ NMVA++  +P    +   + +++  + +VV +RT+Y
Sbjct: 305 KDVNSEAVLNYLYKNTDLQVAYNFNMVAISEGRPVLMGIRQFIDSYLNHQIDVVTKRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+++IR S N + A+  L+                 
Sbjct: 365 ELDHAESRMHIVEGLMKALSILDEVIKLIRASKNKKDAKDNLV----------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      ++ E + L   I    +IL   S
Sbjct: 408 ---------AEFDFTEAQAEAIVTLQLYRLTNTDIVQLQEEHDELKSLIGRLKNILDDHS 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +++     R + I   +  + ++ E  I  E ++++V+  GY+KR  L
Sbjct: 459 ALLNVIKEELTEIRNRFKQGRLSSIEAEISEIKIDKEVMIPSETVIMSVTKHGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G + + ++D D +     V+T  + L F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVNEIGVKDGDVLMKHQEVNTLDTALVFTNKGRYLFIPVHKLAEIKWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ L++GE I  I  + E +   +  Y + AT+HG ++R+ +S F + +R  K
Sbjct: 574 LGQHVSQIVPLDEGEFI--IDAYCESDFKPDAFY-ILATRHGMIKRSNVSMF-KTSRFNK 629

Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +AMK+   DEI++V        I + T  G  + +    +    G  + GV+ I+L  
Sbjct: 630 PLVAMKVKDDDEIINVMRIDSTQLITVITNKGMSLTYSSDELS-DTGLRAAGVKSINLKD 688

Query: 732 GD-----QVIS 737
            D     QVIS
Sbjct: 689 EDFAVLTQVIS 699


>gi|268319491|ref|YP_003293147.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
 gi|262397866|emb|CAX66880.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
          Length = 826

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 283/804 (35%), Positives = 445/804 (55%), Gaps = 60/804 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 8   IRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKKAA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 68  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 128 SKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  V ++ +PD+  D LM+ ++GPDFPTG ++LG  GI+ AY TGRG I +R  + 
Sbjct: 188 AEVIEAAVYLLKHPDVTTDDLMKFVKGPDFPTGGIVLGTKGIREAYETGRGRIQVRSKTT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIELK
Sbjct: 248 IQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV +RT++
Sbjct: 308 KGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVVTKRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +               
Sbjct: 368 DLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              Y   S+        Q  AI+ L+L RLT    + ++ E   L  +I++  +ILS   
Sbjct: 413 ---YDFTSN--------QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR  L
Sbjct: 462 VLEKVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSL 521

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +++      G     +   D +     +ST  ++  F++ G +    V  L     + 
Sbjct: 522 RSFQSTDDEDNG-----LPAGDKIVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKE 576

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D +Q  R+ K
Sbjct: 577 TGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLAD-LQPTRTYK 632

Query: 674 ----IAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                A+KL S D     I  V+  ++E +I L T     VRF IS I   +G  +VGV+
Sbjct: 633 SRAITAIKLKSNDSKVVRIDQVQPDSKE-EITLITNQAYAVRFDISEIPT-SGSKAVGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDE--RICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            ++L   D +++  +   AD  Y +  ++  +    A ++L      ++T  K    V  
Sbjct: 691 SVNLKDDDYIVNYVL---ADPKYIDLIKVGIITQRGAFKQLKLNLINKVTRAKRGVLV-- 745

Query: 784 NISEERCQELKLKEQFILTVSEKG 807
                  +ELK K   I+ +S  G
Sbjct: 746 ------LRELKTKPHRIMAISSYG 763


>gi|269794918|ref|YP_003314373.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
 gi|269097103|gb|ACZ21539.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
          Length = 824

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 282/747 (37%), Positives = 396/747 (53%), Gaps = 80/747 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +  EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M  MG+  ++ +VK A
Sbjct: 20  IVDIDVAQEMEGSFLEYAYSVIYARALPDARDGLKPVQRRILFQMSDMGLRPDRGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+ AIYDAL RMAQ +SLRL +++G GNFGS+D D PAA RYTE RL
Sbjct: 80  RVVGEVMGKLHPHGDTAIYDALVRMAQPFSLRLPMVDGHGNFGSLD-DGPAAPRYTEARL 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +   L +D VDF PNYD    +P VL A  PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 APAALVMTTGLDEDVVDFVPNYDNKLVQPEVLPAAIPNLLVNGASGIAVGMATNLAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ NP   L+ LM  + GPD PTG  I+G  GI++AY TGRGS   R    
Sbjct: 199 IEVVAAARFLVANPKASLEDLMRFVPGPDLPTGGKIVGLEGIRDAYRTGRGSFKTRATVR 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           +E  +  R+ +VVTE+PY V    ++EKI E V+ K++  I  + D +DR  G R+VIE+
Sbjct: 259 VENVTPKRKGLVVTELPYLVGPEKVIEKIKEGVQAKKLAGITAVTDLTDRSHGLRLVIEI 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLYRYT ++  F +N VAL   +P    L  +L  +V  R +VV RR++
Sbjct: 319 KTGFNPEAVLEQLYRYTPMEDSFGMNNVALVDGQPRTLGLREMLSVWVDHRIDVVRRRSQ 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K  DR H++ GL +A+ ++DEV+++IR S + +TAR  L          +++ D  
Sbjct: 379 FRLTKRLDRLHLVEGLLLAIVDIDEVIQVIRSSDDADTARGRL----------REVFD-- 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q+  ILELRL RLT   R ++  E ++L  EI++   IL   
Sbjct: 427 --------------LSEAQSEYILELRLRRLTKFSRIELEKEQSALVEEIEQLRAILGDD 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-------VEGL------------LDMEDEDCIVR 535
           + L  ++  E+  V     TPRRT +       V GL            L++ED  C   
Sbjct: 473 ALLRRVVSDEMAEVAKVYGTPRRTILLDSAGGGVTGLPGPSSPRGAPVSLEIEDTPCW-- 530

Query: 536 EDMVVTVSHLGYVKRVP--LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
               V +S  G + R        R   R             D +    + S    V   +
Sbjct: 531 ----VLLSSTGLLARTSDETEPVRDDHR----------HAHDVLASGVLASVRAEVGALT 576

Query: 594 SLGFVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLY 647
           S G V +  V  LP      G+P   G   +  + +L  GER+ T++   ED  +     
Sbjct: 577 SAGRVVRLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAEDAPT----- 631

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   T  G V+R    D    NR     + L   D ++     T +++++  +     + 
Sbjct: 632 LALGTAAGVVKRVAQGDV--PNRDSWEVVALKPGDAVVGAVPVTDDDELVFVSSEASLLH 689

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQ 734
           FP +A+R   GR + G+ GI LA GDQ
Sbjct: 690 FPATAVRP-QGRTAGGMAGIKLA-GDQ 714



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 19/151 (12%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS------------EKGFGK 810
           RL   D   +   +   S+ G +       L+  E+ +  VS              G  K
Sbjct: 583 RLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAEDAPTLALGTAAGVVK 642

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R +  D  + NR      + +V  +    A+V   PV D+D+++ VS + +L+  P   +
Sbjct: 643 RVAQGD--VPNRD-----SWEVVALKPGDAVVGAVPVTDDDELVFVSSEASLLHFPATAV 695

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           R   R   G+     A D+RVV    +R  +
Sbjct: 696 RPQGRTAGGMAGIKLAGDQRVVFFGAVRAGQ 726


>gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall]
 gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
 gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. Hall]
          Length = 956

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 305/903 (33%), Positives = 474/903 (52%), Gaps = 83/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ DVI   L  LY+ T LQS  S NMVAL   KP+   L  +L+ +V  
Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKAMLEYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  LM++    
Sbjct: 369 QKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    ++VQ  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDVQAEAILELMLYKLTGLEIVAFEKEYKELEKLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------IVRED 537
            +   IL+S   LL +IK+EL+ VK+  +  RRT I+E     +DE         IV ED
Sbjct: 463 NKLKKILNSEKELLKVIKKELIEVKETYNDKRRTSIIE-----DDEKAKIDIEEIIVEED 517

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V+T+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G 
Sbjct: 518 VVLTLSNEGFAKRISLKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGN 574

Query: 598 VYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +Y+ KV  +P    + +G  L  I+ +++  E I       ED ++  ++  +F T  G 
Sbjct: 575 MYQIKVINIPEFKWKEKGVRLDEIIKTIDLSETIMEAFSI-EDFTAQKDM--LFITDSGY 631

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAI 713
           +++  L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++
Sbjct: 632 IKKTTLDKF-NTNYTKIMALKLKKGEFLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEE 771
                RN +G +   +   D   S+  V   D +Y+ +  Y+         IS   D + 
Sbjct: 691 EP-VDRNIIGYKLFDILPND---SIEKVDFCD-NYEYKSFYVNISKEGLITISDLKDNKS 745

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
             SL  DSS                 + ++   ++G      ++  +     G  I A  
Sbjct: 746 HISLFTDSS-----------------KILVLFDDEGKAYYIPAFMLQSIKEEGINISAFT 788

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             KI+ + A ++ F   ++  I   S+KG + R  ++E++I   +T+  V     K++++
Sbjct: 789 GDKISLLNA-ISTFRFEEDISIYFSSEKGLIKRTLLSELKIEGNSTQ--VYKFKHKEDKL 845

Query: 892 VSV 894
           VS+
Sbjct: 846 VSI 848



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 20/181 (11%)

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKE---KVWRLPIGSPQARGKALINILSLNQGERIT-- 631
           ++DL    +H S+   SS   V  +   K + +P    Q+  +  INI +   G++I+  
Sbjct: 737 ISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAFMLQSIKEEGINISAFT-GDKISLL 795

Query: 632 ---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG--KIAMKLDSRDEIL 685
              +   F ED S      + F+++ G ++R  LS+  I+ N +   K   K D    IL
Sbjct: 796 NAISTFRFEEDIS------IYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSIL 849

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             E   Q+N IL+ T+    +RF   A+    G+ + GV GISL   D+VI  +I+   D
Sbjct: 850 IKEHGEQKN-ILIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILASIIDEND 907

Query: 746 A 746
            
Sbjct: 908 T 908


>gi|56752405|ref|YP_173106.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|56687364|dbj|BAD80586.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
          Length = 858

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 268/739 (36%), Positives = 402/739 (54%), Gaps = 90/739 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ + K A
Sbjct: 13  ILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFRKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+D DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPPAAMRYTETRL 132

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  LL+++G++TVDF  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD  +A+ID P +    L+  + GPDFPTG  ++G  GI +AY  GRGSI +RG++
Sbjct: 193 LGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILDAYLEGRGSIPVRGIA 252

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE     K    R  I+VTE+PYQV+KA  +EK+A+LV + ++  IAD+RDESDR+G R
Sbjct: 253 RIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R A AD +L QLY+ T+LQS F   ++A+   +P++ +L  +L+ F++FRE  +
Sbjct: 313 VVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSLKQLLEQFLSFREGTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  + L +   R  +L GL  ++++LD ++ I+R SP+  TAR  L Q  ++      
Sbjct: 373 RRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARL-QVHFD------ 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  A+L + + R+T L ++ ++ E  +L  +      
Sbjct: 426 -------------------LNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQT 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--------------------------- 522
           +L  R  LL  +K++L  +K    +P RTR+ E                           
Sbjct: 467 LLGDRPTLLKALKKDLRDLKRRFGSPHRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATA 526

Query: 523 -----GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY-RAQRRGG---------KGRS 567
                 L+     D  V +   V      + +   L +  R Q +           K +S
Sbjct: 527 GPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPWLKAKS 586

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL---PIGSPQARGKALINILSL 624
           G   R  DF   L        +L  ++ G  Y+  +  +   PI +    G+    I + 
Sbjct: 587 GAQERT-DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPGPIANLLPTGRQSTAIAA- 644

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                 T ++P   +E S   L     +  G V+R  L++  +I+  G   +KL   + I
Sbjct: 645 ------TLLLPLASEERSLLPL-----SSQGRVKRLALTELAEISNRGLQLLKLAEEEII 693

Query: 685 LSVETCTQENDILLTTKLG 703
            +   C  + ++LL +  G
Sbjct: 694 QAACLCAPQQEVLLGSSGG 712


>gi|325125699|gb|ADY85029.1| DNA topoisomerase IV subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 827

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 271/749 (36%), Positives = 419/749 (55%), Gaps = 47/749 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K 
Sbjct: 3   ETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I +
Sbjct: 183 PPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV 
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+            
Sbjct: 363 KRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L  +I     I
Sbjct: 411 --------------AEFAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYV 548
           L+    L   I +EL +VK E  + RR+ I +    +E DE  ++ E+ V V +S  GY+
Sbjct: 457 LADSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L  
Sbjct: 517 KRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L   E I  +  F  +     +L  + AT  G +++  L+D +Q 
Sbjct: 572 SKWKDVGQHLSQELGLAADESIIRV--FALEALDDPDLAFLLATNDGFIKQVALAD-LQP 628

Query: 669 NRSGK----IAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            R+ K    +AMK+   DSR   + +   +++ +I+L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLAKTSEKREIILFTNQAFALKYDIDEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750
            GV+ I+L + D V++    L  D  Y++
Sbjct: 688 AGVKSINLKEDDYVVA---CLVTDPQYED 713


>gi|124024717|ref|YP_001013833.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
 gi|123959785|gb|ABM74568.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 827

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/514 (43%), Positives = 326/514 (63%), Gaps = 32/514 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + Y KCA
Sbjct: 6   LKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  +++G GNFGS+D DPPAA RYTE RL
Sbjct: 66  RVVGDVLGKYHPHGDQAVYDALVRQVQIFNSRYPILDGHGNFGSIDDDPPAAMRYTETRL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              ++  +L ++ K+TVDF PN+DGS QEP VL A+ P +++NG  GIAVGMAT+IP HN
Sbjct: 126 APISNDAILSEIDKETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATSIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+  +A+I  P ++ + L+EII GPDFPTG  IL   GIK  Y  GRGSI +RG++
Sbjct: 186 LNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVSNGIKETYTKGRGSITMRGIA 245

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE     K    R  I+++E+PYQ+NKA  +EK+A+LV   +I  IAD+RDESDR G R
Sbjct: 246 RIEEINPGKGKHKRSGIIISELPYQLNKAGWIEKLADLVNNGKISGIADIRDESDRDGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++E+KR +    IL+ LY+ TSLQS F   ++AL   +P + TL  +L  F+ FRE  +
Sbjct: 306 ILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQLTLRKLLNNFLEFRENTI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + R+ YLL   ++R  ++  L  A  N+ +V+ +I  S +   A+  L+           
Sbjct: 366 LLRSNYLLKNIKNREEIVEALIQATNNVRKVIELIENSKDTPEAKSNLII---------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           ++ ++E Q   IL + L ++TGL +D ++NEL  L  +  E   
Sbjct: 416 ----------------SLKINERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELEL 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           I++ +  L+ ++ +EL  +K    + RRT+++EG
Sbjct: 460 IINDKENLMKVMVKELKDLKKRFGSKRRTKLIEG 493


>gi|300812416|ref|ZP_07092846.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496583|gb|EFK31675.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 827

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/749 (36%), Positives = 418/749 (55%), Gaps = 47/749 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K 
Sbjct: 3   ETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I +
Sbjct: 183 PPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV 
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+            
Sbjct: 363 KRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L  +I     I
Sbjct: 411 --------------AEFAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYV 548
           L+    L   I +EL +VK E  + RR+ I +    +E DE  ++ E+ V V +S  GY+
Sbjct: 457 LADPKVLQKEIIKELQAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L  
Sbjct: 517 KRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L   E I  +  F  +     NL  + AT  G +++  L+D +Q 
Sbjct: 572 SKWKDVGQHLSQELGLAADESIIRV--FALEALDDPNLAFLLATNDGFIKQVALAD-LQP 628

Query: 669 NRSGK----IAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            R+ K    +AMK+   DSR   + +   +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750
            GV+ I+L + D V++    L  D  Y++
Sbjct: 688 AGVKSINLKEDDYVVA---CLVTDPQYED 713


>gi|123967541|ref|YP_001008399.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
 gi|123197651|gb|ABM69292.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 813

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/565 (41%), Positives = 355/565 (62%), Gaps = 40/565 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRI+F M ++G+  +K +
Sbjct: 2   DKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL ++ Q++S +   ++G GNFGS+D DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV+F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG V ++ N DI    L  II+GPDFPTG  ++    I+  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRAIEELYQTGKGSITI 241

Query: 251 RGVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV + E     K    +  I++ E+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP +  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKKYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    D+  +  GL+ A  ++ +V+ II  S N   AR +L+++     
Sbjct: 362 EETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEK----- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I NE+ +L  +  
Sbjct: 417 ---------------------FFLSEKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTV 542
               +L+ R  LL ++ +ELL +K + +  R+T+I++ L   E+ + +   + ED +   
Sbjct: 456 YFQKLLNERELLLKLLIEELLILKKKYNVIRKTKIIKNLNQNEELETLNNQILEDFINKK 515

Query: 543 SHLG-----YVKRVPLSVYRAQRRG 562
           + L      Y+KR+ LS Y+    G
Sbjct: 516 TKLYIDNRLYLKRMILSNYKKSFEG 540


>gi|72383169|ref|YP_292524.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
 gi|72003019|gb|AAZ58821.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
          Length = 827

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/514 (42%), Positives = 327/514 (63%), Gaps = 32/514 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + Y KCA
Sbjct: 6   LKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERPYRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  +++G GNFGS+D DPPAA RYTE RL
Sbjct: 66  RVVGDVLGKYHPHGDQAVYDALVRQVQVFNSRYPILDGHGNFGSIDDDPPAAMRYTETRL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              ++  +L ++ ++TVDF PN+DGS QEP VL A+ P +++NG  GIAVGMAT+IP HN
Sbjct: 126 APISNDAILSEIDQETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATSIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+  +A+I  P ++ + L+EII GPDFPTG  IL   GIK  Y  GRGSI +RG++
Sbjct: 186 LNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVSNGIKETYTKGRGSITMRGIA 245

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE     K    R  I+++E+PYQ+NKA+ +EK+A+LV   +I  IAD+RDESDR G R
Sbjct: 246 RIEEINPGKGKHKRSGIIISELPYQLNKASWIEKLADLVNNGKISGIADIRDESDRDGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++E+KR +    IL+ LY+ TSLQS F   ++AL   +P + TL  +L  F+ FRE  +
Sbjct: 306 ILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQLTLKKLLNNFLEFRENTI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + R+ YLL   ++R  ++  L  A  N+ +V+ +I  S +   A+  L+           
Sbjct: 366 LLRSNYLLKNIKNREEIVDALIQATNNVKKVIDLIEKSKDTPEAKSNLII---------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           ++ ++E Q   IL + L ++TGL +D ++NEL  L  +  E   
Sbjct: 416 ----------------SLKINERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAELEL 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           I++ +  L+ ++ +EL  +K    + RRT+++EG
Sbjct: 460 IINDKENLMKVMVKELKDLKKRFGSKRRTKLIEG 493


>gi|227889993|ref|ZP_04007798.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849437|gb|EEJ59523.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 826

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 285/804 (35%), Positives = 444/804 (55%), Gaps = 60/804 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 8   IRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKKAA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 68  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 128 SKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I +R  + 
Sbjct: 188 AEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSKTT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIELK
Sbjct: 248 IQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV +RT++
Sbjct: 308 KGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVVTKRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +               
Sbjct: 368 DLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              Y   ++        Q  AI+ L+L RLT    + ++ E   L  +I++  +ILS   
Sbjct: 413 ---YDFTTN--------QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR  L
Sbjct: 462 VLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSL 521

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +++      G     +   D V     +ST  ++  F++ G +    V  L     + 
Sbjct: 522 RSFQSTDDEDNG-----LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKE 576

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D +Q  R+ K
Sbjct: 577 TGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLAD-LQPTRTYK 632

Query: 674 ----IAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                A+KL S D     I  V+  ++E +I L T     VRF IS I   +G  +VGV+
Sbjct: 633 SRAITAIKLKSNDSKVIRIDQVQPDSKE-EITLITNQAYAVRFDISEIPT-SGSKAVGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDE--RICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            ++L   D +++  +   AD  Y +  ++  +    A ++L      +IT  K    V  
Sbjct: 691 SVNLKDDDYIVNYVL---ADPKYIDLIKVGIITQRGAFKQLKLNLINKITRAKRGVLV-- 745

Query: 784 NISEERCQELKLKEQFILTVSEKG 807
                  +ELK K   I+ +S  G
Sbjct: 746 ------LRELKTKPHRIMAISSYG 763


>gi|257054878|ref|YP_003132710.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
 gi|256584750|gb|ACU95883.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
          Length = 827

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 287/784 (36%), Positives = 415/784 (52%), Gaps = 82/784 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T E++ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   N  YVK +R+ G+
Sbjct: 28  VTTEIEESYLEYAYSVIHSRALPDARDGLKPVHRRILYSMYESGYRPNHAYVKSSRVVGD 87

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG+YHPHG+ AIYDA+ R+AQD+S+ + L++G GNFGS D D PAA RYTE R+   A 
Sbjct: 88  VMGRYHPHGDTAIYDAMVRLAQDFSMNVPLVDGHGNFGSPD-DGPAASRYTEARMSSEAM 146

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+D+LG+DTVDFRPNYDGS QEP VL A +PN+LVNG  GIAVGMATN+  HNLGE+V 
Sbjct: 147 LLVDELGEDTVDFRPNYDGSLQEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEIVA 206

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               +I++P+  LD LME + GPD PTG  +LG   ++ AY TGRG + +R  +      
Sbjct: 207 AARWLINHPNASLDKLMEFVPGPDLPTGGQLLGLDQVRKAYETGRGVVRMRAKATTGPIE 266

Query: 261 GDREQ-IVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRDESDRQ-GYRVVIELKRG 317
           G R Q I VTE+PY V    ++E+I E V + KR+  IAD++D +DR+ G ++VIE K G
Sbjct: 267 GSRRQGITVTELPYGVGPEKVIERITEEVNKTKRLTGIADVKDLTDRENGTKLVIECKVG 326

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +   +L  LYR T L+  F +N + L   +P    L  +L+ F+A R EVV RRT+Y  
Sbjct: 327 VNPQALLADLYRLTPLEQSFGINNLVLVDGQPRTLGLKELLEVFLAHRYEVVTRRTRYRR 386

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            K  +R H++ GL  A+ ++D+V+++IR S N + A+  LM+R                 
Sbjct: 387 RKREERLHLVEGLLKALVDIDKVIKLIRGSENAQAAKEGLMKR----------------- 429

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSEVQ   IL+  L RLT   + ++ +E + L  EI E  +IL     L
Sbjct: 430 ---------FKLSEVQAAYILDTPLRRLTKYDKLELESEQDRLRKEIAELTEILDDEKVL 480

Query: 498 LGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTVSH 544
             ++ +EL  V  +   PRRT +++             G L++ D+ C       V +S 
Sbjct: 481 KRVVSKELAKVAKDFAVPRRTALIDGDLKEVLAASKPAGPLEVADDPC------QVILSS 534

Query: 545 LGYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            G V R       A   +RR G+ R        D +  +   +    VL  ++ G  +K 
Sbjct: 535 TGLVARTAAESEEAVEGRRRSGRAR-------HDAIAAMVHTTARGQVLLVTNRGRAFKT 587

Query: 602 KVWRLPIGSPQARGKALI-------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            V  LP+  P++ G   +        +  L + ER+  + P  E       L     T+H
Sbjct: 588 DVLPLPV-LPESSGTVSLRDGVDVRELAPLERDERVVGLAPLGEQAQGSPGL--ALGTRH 644

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAI 713
           G V+       ++ +    I +K    DE++     T   + L   T     +RF  S +
Sbjct: 645 GVVKVCAPDWPVRSDEFDVITLK--DGDEVVGATWLTDGAETLTFVTSQASLLRFDASLV 702

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R   GV GI+L K  +V+    V   DA++ E +             +G+T ++T
Sbjct: 703 RPQGLRGG-GVAGINLPKDSEVVFFGAVRTDDAEHGEPMVVTA---------TGETVKVT 752

Query: 774 SLKN 777
            L  
Sbjct: 753 PLSQ 756


>gi|325686242|gb|EGD28285.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 827

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 272/749 (36%), Positives = 418/749 (55%), Gaps = 47/749 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K 
Sbjct: 3   ETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I +
Sbjct: 183 PPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV 
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+            
Sbjct: 363 KRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L  +I     I
Sbjct: 411 --------------AEFAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYV 548
           L+    L   I +EL +VK E  + RR+ I +    +E DE  ++ E+ V V +S  GY+
Sbjct: 457 LADPKVLQKEIIKELRAVKKEFGSDRRSEISDEKARVEVDEKALITEESVRVLISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L  
Sbjct: 517 KRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L   E I  +  F  +     NL  + AT  G +++  L+D +Q 
Sbjct: 572 SKWKDVGQHLSQELGLAADESIIRV--FALEALDDPNLAFLLATNDGFIKQVALAD-LQP 628

Query: 669 NRSGK----IAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            R+ K    +AMK+   DSR   + +   +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750
            GV+ I+L + D V++    L  D  Y++
Sbjct: 688 AGVKSINLKEDDYVVA---CLVTDPQYED 713


>gi|104773994|ref|YP_618974.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514010|ref|YP_812916.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423075|emb|CAI97796.1| DNA topoisomerase IV, subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093325|gb|ABJ58478.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 827

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 271/749 (36%), Positives = 418/749 (55%), Gaps = 47/749 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K 
Sbjct: 3   ETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I +
Sbjct: 183 PPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  +
Sbjct: 243 RAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV 
Sbjct: 303 VIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+            
Sbjct: 363 KRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L  +I     I
Sbjct: 411 --------------AEFAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMV-VTVSHLGYV 548
           L+    L   I +EL +VK E  + RR+ I +    +E DE  ++ E+ V V +S  GY+
Sbjct: 457 LADSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L  
Sbjct: 517 KRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L   E I  +  F  +     +L  + AT  G +++  L+D +Q 
Sbjct: 572 SKWKDVGQHLSQELGLAADESIIRV--FALEALDDPDLAFLLATNDGFIKQVALAD-LQP 628

Query: 669 NRSGK----IAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            R+ K    +AMK+   DSR   + +   +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLAKTSEKREITLFTNQAFALKYDIDEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750
            GV+ I+L + D V++    L  D  Y++
Sbjct: 688 AGVKSINLKEDDYVVA---CLVTDPQYED 713


>gi|257068609|ref|YP_003154864.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
 gi|256559427|gb|ACU85274.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
          Length = 822

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 303/841 (36%), Positives = 445/841 (52%), Gaps = 77/841 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + D+  E+ I  + +T EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+ 
Sbjct: 15  AGDDAVEETIVDIDVTSEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLR 74

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K +VK  R+ GEVMGK HPHG+ AIYDAL RMAQ +++RL L++G GNFGS+D + PA
Sbjct: 75  PEKGHVKSQRVVGEVMGKLHPHGDTAIYDALVRMAQSFNMRLPLVDGHGNFGSLD-NGPA 133

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  + D L +D VD  PNYD    +P VL A+YPN+LVNG  GIAVGM
Sbjct: 134 APRYTEARLAPAALLMTDSLDEDVVDMVPNYDNQLLQPEVLPAQYPNLLVNGASGIAVGM 193

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL E +     +ID+P+ +L+ LM  + GPD PTG  I+G  GI++AY TGRG
Sbjct: 194 ATNMAPHNLVETIAAARHLIDHPEAELEELMRFVPGPDLPTGGRIVGLDGIRDAYRTGRG 253

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S  +R  + IE  +  R+ IVVTE+PYQV    + EK+ + V+ K++  I D +D +DR 
Sbjct: 254 SFKMRATTRIENVTSRRKGIVVTELPYQVGPERLAEKLRDAVQSKKVQGITDYQDLTDRH 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+ +K G   D +L QLY++T L+  F +N VAL   +P    L  +L+ FV  R
Sbjct: 314 HGLRLVLTVKSGFDPDAVLAQLYKFTPLEESFGINNVALVDGQPRTLGLKQMLEVFVGHR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT++ L K R R H++ GL +A+ ++DEV++I+R S + E AR  LMQ      
Sbjct: 374 LEVVRRRTEHRLGKRRARLHLVEGLLLAIVDIDEVIQIVRQSDDAEIARTRLMQ------ 427

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++VQ   ILELRL RLT   + D+  E + L  EI+
Sbjct: 428 --------------------VFDLTQVQAEYILELRLRRLTRFSQIDLEAERDDLRREIE 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL----------LDMEDEDCIVR 535
              +IL S + L  ++ +EL +V  E    RRT ++E            L++ DE C   
Sbjct: 468 RLEEILGSETVLRALVSEELAAVAAEHGDSRRTVLLEAAEKPAVVAGASLEVADEPCH-- 525

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
               V ++  G + RV        R G +G         D +      +T + V   +  
Sbjct: 526 ----VLLTGTGLIARV-TGEEPVPREGPRG-------SHDVIVAGVHSTTRSEVGVVTDR 573

Query: 596 GFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G V +  V  LP  +P       A G  L +++ L + E    ++   E + +     + 
Sbjct: 574 GRVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDLERDEHALGLIRLAEADIARGG-GIA 632

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCVR 707
             T+HG V+R +  +F + +  G   + L   D ++ V      ++ D+   T   Q + 
Sbjct: 633 LGTRHGVVKRVQ-PEFPRSD--GFEIISLKDGDAVVGVVDLEDDEDLDLAFITSDAQLLH 689

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLIS 766
           FP S +R   GR + GV GI LA G  V+S  AI + A AD    +  +   S+   L+ 
Sbjct: 690 FPSSGVRP-QGRGAGGVAGIKLAAGAHVLSFGAIDVTAPAD----VVTVAGSSSTLPLLQ 744

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
             + ++TSL    +     +  RC      E  ++       G     +  R S+ +G+ 
Sbjct: 745 TGSLKVTSLTEFPAKGRATAGMRCHRFLRGEDTLI-------GAWVVPHPARASSEAGQP 797

Query: 827 I 827
           I
Sbjct: 798 I 798


>gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 817

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 277/743 (37%), Positives = 406/743 (54%), Gaps = 60/743 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V ++ EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +VK A
Sbjct: 14  IEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMAEMGLRPDRGHVKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG+A IYDAL R+AQ +SLR+ L++G GNFGS+D D PAA RYTE RL
Sbjct: 74  RVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSLD-DGPAAPRYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L ++L +D VDF PNYDG FQ+P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 133 AAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGATGIAVGMATNMAPHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ NPD  ++ LME + GPD P+G +I+G  GIK+AY  GRGS   R  S 
Sbjct: 193 IEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIVGLDGIKDAYTNGRGSFRTRAKSS 252

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314
           IE     R  IV+TE+PY V    ++EKI + V+ K++  IAD+ D +DR  G R+VI +
Sbjct: 253 IESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVTDLTDRNNGLRLVIGI 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QLYR T L+  F +N VAL   +P+   L  +L+ ++  R  VV RR++
Sbjct: 313 KTGFDPKAVLEQLYRLTPLEDSFGINNVALVDGQPQTLGLRDMLRVYIDHRIRVVTRRSE 372

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L + R+R H++ GL IA+ ++DEV+++IR S + E AR +L          +++ D  
Sbjct: 373 YRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKL----------QEVFD-- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS  Q   ILELRL RLT   R ++  E + L  EI + +++L S 
Sbjct: 421 --------------LSHPQAEYILELRLRRLTKFSRIELEAERDQLNAEIAQLVELLGSE 466

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L   + +EL +  +   TPRRT ++ G         +         +    +   P  
Sbjct: 467 TLLRQQVAKELDAAAEAYGTPRRTLLLNG-------GPVQPRSAKAAAAADLQIADAPCR 519

Query: 555 VY--------RAQRRGGKGRSGVVM----RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           VY        RA+        GVV        D +      +T   +   +S G + +  
Sbjct: 520 VYLSATGRMVRAELIADAPAGGVVPPTRRSKHDAIRSAVDTTTRGEIGAVTSAGRLVRFS 579

Query: 603 ---VWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
              +  +P  S Q A G  +   L+L +GE +  ++P  +  +      +   T+ G V+
Sbjct: 580 PVDLPSVPANSVQLAAGTKVEQYLALAKGETVVALVPLSDGPT------IALGTEQGVVK 633

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R   S+         IA++    D ++         +++      Q +RF  S++R   G
Sbjct: 634 RVAASELGTKPEIEIIALR--DGDRVVGAAPAGDNAELVFVASDAQLLRFDASSVRP-QG 690

Query: 719 RNSVGVRGISLAKGDQVISMAIV 741
           R++ G+ GI L+ G +VI+ A++
Sbjct: 691 RSASGMAGIRLSDGARVIAFAVI 713


>gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
 gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
          Length = 818

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 289/759 (38%), Positives = 421/759 (55%), Gaps = 85/759 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E+ I  + + +EMQN++L Y+ +VI  RA+PD RDGLKPV RRIL+G  ++GV  ++
Sbjct: 12  EDFEEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELGVRPDR 71

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK  RI GEVMGKYHPHG+ AIYDAL RMAQ ++LRL LI+G GNFGS+D D PAA R
Sbjct: 72  GHVKSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DGPAAAR 130

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL ++A  ++  L ++TVDF PNYD +  +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 131 YTEARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAVGMATN 190

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV+     +I NP   LD LM+ + GPD P G  I+G  GI++AY TGRGS  
Sbjct: 191 MAPHNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGGRIVGLEGIRDAYLTGRGSFR 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
            R  + IE  +  R+ IVVTE+PY V    ++EKI +LV+ K++  I+DL+D SDR  G 
Sbjct: 251 TRATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLSDRGHGL 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K G + D +L QLYR T ++  F +N VAL   +P    L  +L+ +V FR +V
Sbjct: 311 RLVIEVKNGFNPDAVLEQLYRLTPMEENFGINNVALVEGQPRTLGLKQLLQVYVDFRTDV 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L K  +R H++ GL IA+ ++DEV+++IR S +  TA+  LM          
Sbjct: 371 VRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLM---------- 420

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D+ D                LS+ Q   IL+L+L RLT   R ++ +E + L  +I+E  
Sbjct: 421 DVFD----------------LSDPQATYILDLQLRRLTRFSRIELESEKSELERQIEELR 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-----------LLDMEDEDCIVRED 537
            +L S   LL ++  EL  V  +  TPRRT ++E             L++ D+ C     
Sbjct: 465 ALLESDRLLLKLVSTELAEVAKKHGTPRRTVLLESSGQARPTTTATPLEITDDPCW---- 520

Query: 538 MVVTVSHLGYVKRV----PLSVYRAQRRGGK--GRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             V +S  G + R     P++   ++ R     G      R E     L +V+T   ++ 
Sbjct: 521 --VLLSSTGLLARTVGPEPVTAEGSRSRHDALVGAVRTTARGE-----LGLVTTSGRMVR 573

Query: 592 FSSLGFVYKEKVWRLPI--GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYV 648
            S+L      ++  LP   G+P   G A L   + L + E   TI+P   +        V
Sbjct: 574 LSAL------ELPTLPPTNGAPSLGGGAPLAAYVDLAKDEEPLTIVPIGAEAP-----VV 622

Query: 649 VFATKHGNVRR-----NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKL 702
              T  G V+R      K +D+  I+        L   D ++      +++ D++  T  
Sbjct: 623 ALGTASGVVKRVSPDTPKGTDWSLIS--------LKDGDRVVGAAVADRDDLDLVFITSD 674

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            Q +RF    +R   GR++ G+ G+ LA G   +   +V
Sbjct: 675 AQLLRFAAKTVRP-QGRSAGGMAGVKLAAGASAVFFGVV 712


>gi|1495800|emb|CAA65021.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 620

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/588 (39%), Positives = 355/588 (60%), Gaps = 37/588 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+ 
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSP 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R  ++ GL   ++ LDEV+ +IR S N +   +E ++ S++           
Sbjct: 363 FDKEKAEKRLRIVEGLIRVISILDEVIALIRASEN-KADPKENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK    TPR + +      ++++    I  ED  V+V+  GY+KR  
Sbjct: 457 RTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFV 598
              + A      G+     RD+D +  +F+ S  T+  +L F+SLG V
Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV 557


>gi|331090928|ref|ZP_08339770.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405150|gb|EGG84686.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 746

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/713 (35%), Positives = 404/713 (56%), Gaps = 27/713 (3%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G++++K Y K ARI G+ MGK
Sbjct: 15  MKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIKYDKPYRKSARIVGDTMGK 74

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+++IY++L  MAQD+   + L++G GNFGS++GD  AA RYTE RL +      L
Sbjct: 75  YHPHGDSSIYESLVVMAQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEARLARLTQEAYL 134

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IPTHNLGEVVD   
Sbjct: 135 SDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATSIPTHNLGEVVDAVK 194

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + N  I    LM+ ++GPDFPTGA+++ +  + + Y TG G I +RG   +E+  G +
Sbjct: 195 AYMKNNGITTKQLMKYVKGPDFPTGAIVVNKDDLLSVYETGSGKIKLRGKVEVEEGKGGK 254

Query: 264 EQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           +++V++EIPY +  A +   L  +A LV  K+  DI D+ ++S ++G R+V+ELK+    
Sbjct: 255 KKLVISEIPYTMIGAGIGKFLNDVASLVETKKTNDITDISNQSSKEGIRIVLELKKDTDV 314

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+   KPE   L  I++  V F+ E+  R+ K LL K 
Sbjct: 315 ENLKNMLYKKTRLEDTFGVNMLAVADGKPETMGLKKIIEHHVDFQFELATRKYKNLLGKE 374

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            D+  +  GL  A   +D ++ I+R S + +  +  L       + + D I    + S  
Sbjct: 375 LDKKEIQEGLIKACDVIDLIIEILRGSKSIKDVKACL------TNGVTDNISFKSNISKK 428

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           + S   +  +E Q  AILE+RL +L GL  + ++ E       I    DIL++   +  +
Sbjct: 429 MAS--MLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNIARYEDILNNYDSMAEV 486

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I +EL   K      RRT I      + +E  +  +D+VV +   GY + +  + Y   +
Sbjct: 487 IMEELDYYKKTYGRKRRTVIENAEEAVYEEKKVEEQDVVVLMDRFGYTRSIDTATYDRNK 546

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                 +  +         +F  +T   +  F++ G +++ KV  +P G  + +G  + N
Sbjct: 547 ESADSENKHI---------IFCKNT-GKICMFTNTGKMHQVKVLDIPFGKFRDKGTPVDN 596

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           + + +  E     +    DE  +    ++FATK+G +++   ++F+ +++    A KL  
Sbjct: 597 LSNYDSAEENIIYIC---DEEQFRMGKMLFATKYGMIKKVDGAEFV-VSKRTITATKLQE 652

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            DE++S++   +  +I+L T  G  +RF    +     + ++GVRGI L K D
Sbjct: 653 EDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEV-AEKKKGAIGVRGIKLQKTD 704



 Score = 37.7 bits (86), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           + +L N  S E NI    C E + +   +L  ++ G  K+    +F +S R+   I AT 
Sbjct: 594 VDNLSNYDSAEENIIY-ICDEEQFRMGKMLFATKYGMIKKVDGAEFVVSKRT---ITAT- 648

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
             K+ E   +V++ PVN+N  I+L +  G  +R    E+    +   GV
Sbjct: 649 --KLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEVAEKKKGAIGV 695


>gi|323342061|ref|ZP_08082294.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464486|gb|EFY09679.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 822

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 288/880 (32%), Positives = 463/880 (52%), Gaps = 120/880 (13%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K Y K A+  G V+G YHPHG++
Sbjct: 22  YSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRKSAKTVGLVIGNYHPHGDS 81

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y+A+ RM+Q W + + LI+ QGN GS+D DP AA RYTE R+ K +  LL+++ ++ V
Sbjct: 82  SVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYTEARISKLSQKLLENIDEEVV 141

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F  N+D    EP VL ARYPN+LVNG  GIA G ATNIP  NL E++D  +  + NP+ 
Sbjct: 142 PFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPPFNLNEIMDASIYRLHNPNC 201

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            ++ +M +++GPDFPTGA+I G+ GI++    G+G IV+R  + I +     +QIV+TE+
Sbjct: 202 SVEEIMTMVQGPDFPTGAIIQGQEGIEDIIRKGKGRIVVRAKAEIVENKS-MKQIVITEL 260

Query: 272 PYQVNKAAMLEKIAELVREKR---IVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           PY+V K+ ++ KI EL   K      D+ D+RDESDR G R+VI+ KR A+ + ILN  Y
Sbjct: 261 PYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLRIVIDCKRDANVESILNLFY 320

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           +YT LQ  ++ NMVA+   +P+   L+ +L A++ FR+EVV+ R+KY   +   R H+L 
Sbjct: 321 KYTELQVYYNANMVAIVDQRPKVCGLLEVLDAYLKFRQEVVLNRSKYRYEQKEKRLHILE 380

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL  A +NLDE++ +IR S N   +R  +M                              
Sbjct: 381 GLMKATSNLDEIIAVIRSSNNRSESRNNIM--------------------------AEFG 414

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL-GIIKQELLS 507
            +E Q  AI++L+L RL+    + +R+E   L  E+ E LD++ +   +L  +I +E + 
Sbjct: 415 FTEAQATAIVDLQLYRLSSTDINALRDEFAKLANEL-EYLDLVINNIDMLNNMIVKEFME 473

Query: 508 VKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           +K+  DTPRR+ I   +  L+++    I  E ++VTVS  GY+K+V L  Y     G   
Sbjct: 474 IKEAFDTPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSY-----GSSQ 528

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-----FVYK--EKVWRLPIGSPQARGKAL 618
           +  + + DED       V T   ++F +S G      V++  E  WR         G  +
Sbjct: 529 KDVIALMDEDMPVFSSEVETTDYLVFVTSRGRYGMILVHEIDEARWR-------DTGSHI 581

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI--AM 676
              +  +  E+I ++      +S     ++V +T  G +++  +S+ +++ R+ ++   M
Sbjct: 582 NQYMKCDPNEKIISVFTL---KSFDTYRFIVTSTASGMIKKTAISE-LEVKRTNRLYDVM 637

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           KL   DE++     + +  +LL +K GQC+R  ++ I      N +G+R    AKG  VI
Sbjct: 638 KLGKHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEI------NPIGLR----AKG--VI 685

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M + L      ++R+     +S +  ++                      +R Q  ++K
Sbjct: 686 GMKLKL------NDRVVSTMGLSDESEVV-------------------FVSDRFQMKRIK 720

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            Q                 D  I+NR+ +G     + K N    L  +F  N  D I++ 
Sbjct: 721 AQ-----------------DIAINNRATQGTSIVKMVKSNP-HCLAELFVGNIQDHILIY 762

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +D  ++I  P+ ++ I S        FST   E+  S+ R
Sbjct: 763 NDHTSII--PIKDVPIMS----ADATFSTVTTEKDFSILR 796



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           +FI+T +  G  K+T+  +  +   +    R  DV K+ +   LV     ++++ ++LVS
Sbjct: 606 RFIVTSTASGMIKKTAISELEVKRTN----RLYDVMKLGKHDELVGAVITSNDEHLLLVS 661

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIV 903
            +G  +R+ + EI       KGV+      ++RVVS   +  ESE+V
Sbjct: 662 KEGQCMRLDLAEINPIGLRAKGVIGMKLKLNDRVVSTMGLSDESEVV 708


>gi|304389377|ref|ZP_07371341.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327366|gb|EFL94600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 844

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 300/789 (38%), Positives = 419/789 (53%), Gaps = 103/789 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD   E+ I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  
Sbjct: 2   SDSSLER-IQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTP 60

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA
Sbjct: 61  DKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAA 119

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMA
Sbjct: 120 ARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMA 179

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY TGRG 
Sbjct: 180 TNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYETGRGI 239

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
            + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR  
Sbjct: 240 FITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTH 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R 
Sbjct: 300 GMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRV 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM        
Sbjct: 360 EVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLM-------- 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                              T++ LSE Q   ILELRL RLT   R ++  E + L   I 
Sbjct: 412 -------------------TVFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIA 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   IL+S  +L  +++ ++      L TPRRT ++E     ED   +   +D  + V  
Sbjct: 453 ELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLE-----EDGSAVAASKDAALPVLG 507

Query: 545 LGYVKRVPLSVYRAQRR---GGKGR------SGVVMRDEDFVTDLF-IVSTHTSVLF--F 592
              V  VPL V     R   G  GR      +G V R E F + +   + THT   F   
Sbjct: 508 AMTVSDVPLEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGVV 567

Query: 593 SSLGFVYKEKVWRLPI----------------------------------------GSPQ 612
           +S GFV +  V  LP                                         G+PQ
Sbjct: 568 TSSGFVVRLDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQ 627

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
               A      L  GE +  I+   EDE+      V   T  G V+R +  D+       
Sbjct: 628 LSAAA-----RLEDGETVVGILTLDEDET------VGMMTARGIVKRMR-PDYPSTQDRF 675

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I + L+  D+++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL + 
Sbjct: 676 SI-INLEGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEH 733

Query: 733 DQVISMAIV 741
            QVI+ AIV
Sbjct: 734 TQVIAGAIV 742


>gi|255284072|ref|ZP_05348627.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265417|gb|EET58622.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 748

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/773 (34%), Positives = 417/773 (53%), Gaps = 33/773 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ENTQQQIIRTEYSEIMQKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++   L L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RLQK      L DL K+ V F PN+D + +EP VL  R PN+LVNG  GIAVGM T
Sbjct: 122 YTEARLQKVTQEAFLADLDKNVVPFVPNFDETEKEPEVLPVRLPNLLVNGADGIAVGMVT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D  +A I N +I  + LM+ I+GPDFPTG +++ +  + + Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVIATIKNSNITTEELMQYIQGPDFPTGGIVVNKDELTDIYKTGMGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            IRG   +EK    +E +V++EIPY +   N    L  +A LV  K+  DI D+ ++S +
Sbjct: 242 RIRGKVDVEKGKNGKESLVISEIPYTMIGANIGKFLNDVAALVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL++ A  + ++N LY+ T L+  FSVNM+A++  +PE   L  I++  + F+
Sbjct: 302 DGIRIVLELRKNADTNNLINMLYKKTRLEDTFSVNMLAVSDGRPETLGLKKIIEHHIDFQ 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  R+ + LL K + +  +  GL  A   +D ++ I+R S + E A+  L+       
Sbjct: 362 FEVNTRKYQTLLEKEQAKREIQEGLIKACDVIDLIIEILRGSKSREQAKECLVNGVTEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +      ++ ++ Q  AILE+RL +L GL    ++ E +     I 
Sbjct: 422 RFK--------SRTSKKQAEQLHFTDAQATAILEMRLYKLIGLEIAALQKEHDETVKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              D+L++   +   I +EL S+K E   PR+T +  G   + +E  +   ++V  +   
Sbjct: 474 RYEDLLNNYGSMAKQIIKELQSLKKEYAVPRKTVVENGEEAVYEEKKLEEMEVVFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY + V    Y   +      S  V+                 +  F+  G  +  +V  
Sbjct: 534 GYARTVDAQTYERNKETADAESRYVIP----------CMNTDKICLFTDTGSQHLIRVLD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P G  + +GK + N  + +   E I  +      + S      VF T  G V++ + S+
Sbjct: 584 VPFGKFRDKGKPIDNFCNYSSAREAIVYVESLQRVKMSL----FVFGTAQGMVKQVEGSE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    A KL   D ++SV    +    +  T+   C+R  I  I +   + ++GV
Sbjct: 640 F-DVAKRTIAATKLQEGDRLISVHRMDEAETAVFKTEHDICLRIRIGDIPL-KKKGAIGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYM-KHMSAQRRLISGDTEEITSLK 776
           RGI L +GD+V +M    + D + D+ I Y  K +   R  ++G   + T L+
Sbjct: 698 RGIRLGEGDRVEAM---YYPDGEKDKTILYKEKEIRLDRLKVAGRDTKGTKLR 747


>gi|329667367|gb|AEB93315.1| topoisomerase IV subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 826

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 282/803 (35%), Positives = 444/803 (55%), Gaps = 58/803 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 8   IRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKKAA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 68  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 128 SKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I +R  + 
Sbjct: 188 AEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSKTT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIELK
Sbjct: 248 IQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV +RT++
Sbjct: 308 KGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVVTKRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+                 
Sbjct: 368 DLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLI----------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            S Y          +  Q  AI+ L+L RLT    + ++ E   L  +I++  +ILS   
Sbjct: 411 -SKYE--------FTHNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR  L
Sbjct: 462 VLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSL 521

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +++      G     +   D V     +ST  ++  F++ G +    V  L     + 
Sbjct: 522 RSFQSTDDEDNG-----LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKE 576

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D +Q  R+ K
Sbjct: 577 TGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLAD-LQPTRTYK 632

Query: 674 ----IAMKLDSRD-EILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                ++KL S D +++ ++    ++  +I L T     VRF IS I   +G  +VGV+ 
Sbjct: 633 SRAITSIKLKSNDSKVVRIDQVQPDSKQEITLITNQAYAVRFDISEIPT-SGSKAVGVKS 691

Query: 727 ISLAKGDQVISMAIVLHADADYDE--RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++L   D +++  +   AD  Y +  +I  +    A ++L      ++T  K    V   
Sbjct: 692 VNLKDDDYIVNYVL---ADPKYIDLIKIGIITQRGAFKQLKLSLINKVTRAKRGVLV--- 745

Query: 785 ISEERCQELKLKEQFILTVSEKG 807
                 +ELK K   I+ +S  G
Sbjct: 746 -----LRELKTKPHRIMAISSYG 763


>gi|42519097|ref|NP_965027.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
 gi|41583384|gb|AAS08993.1| topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
          Length = 826

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 282/803 (35%), Positives = 444/803 (55%), Gaps = 58/803 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 8   IRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKKAA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 68  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 128 SKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I +R  + 
Sbjct: 188 AEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSKTT 247

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIELK
Sbjct: 248 IQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV +RT++
Sbjct: 308 KGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVVTKRTEF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +               
Sbjct: 368 DLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              Y    +        Q  AI+ L+L RLT    + ++ E   L  +I++  +ILS   
Sbjct: 413 ---YDFTPN--------QAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNEILSDNK 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR  L
Sbjct: 462 VLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRSSL 521

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +++      G     +   D V     +ST  ++  F++ G +    V  L     + 
Sbjct: 522 RSFQSTDDEDNG-----LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKE 576

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D +Q  R+ K
Sbjct: 577 TGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLAD-LQPTRTYK 632

Query: 674 ----IAMKLDSRD-EILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                A+KL S D +++ ++    ++  +I L T     VRF IS I   +G  +VGV+ 
Sbjct: 633 SRAITAIKLKSNDSKVVRIDQVQPDSKQEITLITNQAYAVRFDISEIPT-SGSKAVGVKS 691

Query: 727 ISLAKGDQVISMAIVLHADADYDE--RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++L   D +++  +   AD  Y +  +I  +    A ++L      ++T  K    V   
Sbjct: 692 VNLKDDDYIVNYVL---ADPKYIDLIKIGIITQRGAFKQLKLSLINKVTRAKRGVLV--- 745

Query: 785 ISEERCQELKLKEQFILTVSEKG 807
                 +ELK K   I+ +S  G
Sbjct: 746 -----LRELKTKPHRIMAISSYG 763


>gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3]
 gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 782

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 268/717 (37%), Positives = 410/717 (57%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  + K A+ISG+VMG YHPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKISGDVMGNYHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LLD L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVAEALLDGLNE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG+  EPVVL A++PN+L NG  GIAVGMATNIP HN+ E+ D C+ +I  
Sbjct: 151 DAVDFRDNYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCDACLHLIKT 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG +I+     I  AY TGRGS  +R    +E     + QIV
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGIIVEPPESIAQAYRTGRGSFRLRCKYEVEDLGRGQWQIV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EK+AE+++ K++  +AD+RDES     R+++E + +    +V++  
Sbjct: 271 VTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRDES-ADDIRLILEPRTKNVDPEVLMGM 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R+EV++RR+++ L K   R  
Sbjct: 330 LYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRHRLGKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   LM+  W     + L    +++ Y   + G
Sbjct: 390 VLEGFIIAFLNLDRVIDIIRYDEDPKAA---LMREEWGIDHPRAL----NEADYVSPAPG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E ++L  E  E  D+L+  +     I  +L
Sbjct: 443 EGELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAERAEIEDLLADPALQWARISDQL 502

Query: 506 LSVKDEL--DTP---RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K     D P   RRTR  E   + ++  E  I RE + V  S +G+V+ +   +   
Sbjct: 503 KETKKTFGKDFPGGARRTRFAEAGEVEEVPLEAMIEREPITVVCSQMGWVRAMTGHIDLT 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F+S G  Y      LP G  +  G+ L
Sbjct: 563 RE--------LKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAANLPGG--RGMGEPL 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +  ++  PE +       ++ A+  GN      ++ +   R+GK  + 
Sbjct: 613 RLMVDLPNEAEIVDILIHQPERK-------LLVASTAGNGFVVPETEVVAQTRTGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   DE   +      + + + ++ G+ + FP+  +        V ++  ++A+G Q
Sbjct: 666 VRD-DERALICVPVAGDHVAVVSQNGKFLVFPLDEMPEMGRGKGVRLQKYNMARGKQ 721


>gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
 gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
          Length = 781

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 267/719 (37%), Positives = 413/719 (57%), Gaps = 41/719 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     ++K A+ISG+ MG +HPH
Sbjct: 30  YLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISGDTMGDFHPH 89

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 90  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAEAMLEGLNE 149

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D+VDFR NYDG   EP VL A +PN+L NG  GIAVGMATNIP HN+ E++D C+ +I +
Sbjct: 150 DSVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELIDACIHLIKS 209

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           P  D D L++ + GPDFPTG +I+  R  I  AY TGRGS  +R    +E     + QIV
Sbjct: 210 PGADDDTLLKYVPGPDFPTGGIIVEPRDNIAKAYRTGRGSFRLRCTHEVEDLGRGQWQIV 269

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K++  +AD+RDES  +  R+V+E K +    DV++N 
Sbjct: 270 VTEIPYQVQKSKLIEKIAELIQTKKVPILADIRDES-AEDIRIVLEPKSKNVDPDVLMNM 328

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           ++R + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR++Y + K   R  
Sbjct: 329 MFRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLRRRSEYRMGKIDHRLE 388

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P++A   LM+ +W      D     ++S Y   + G
Sbjct: 389 VLDGFIIAFLNLDRVIDIIRYDEDPKSA---LMRENWGL----DHPRAYEESDYVTPAPG 441

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E ++L  E    +++L S       I ++L
Sbjct: 442 EGELSEVQAEAILNMRLRSLRRLEEVELTKERDALREERAGLVELLGSDDLQWSKITEQL 501

Query: 506 LSV-----KDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +      KD +   RR+R  E   + ++  E  I RE + V  S +G+++ +   +   
Sbjct: 502 RATKKQFGKDYVGGARRSRFAEAGEVEEVPLEAMIDREPITVVCSQMGWIRAMTGHIDLN 561

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+ L
Sbjct: 562 RE--------LKFKDGDGARFIFHAETTDRLLVFGSNGRFYTVSAANLPGG--RGMGEPL 611

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IA 675
             ++ L N+ E +  ++  PE +       ++ A+  GN       D +   R+GK  + 
Sbjct: 612 RLMVDLPNEVEIVDILIHNPEGK-------LLVASSAGNGFICAEKDIVAQTRTGKQVLN 664

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +K D R +I    T    + + + ++ G+ + F +  +        V ++  ++A+G Q
Sbjct: 665 VKDDDRAQICIPVTG---DHVAIVSENGKFLVFSVEEMPELTRGKGVRLQKYNMARGKQ 720


>gi|126695342|ref|YP_001090228.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542385|gb|ABO16627.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 813

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/475 (45%), Positives = 311/475 (65%), Gaps = 32/475 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  +K +
Sbjct: 2   DKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S +   ++G GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV F  N+DGS  EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLASIAHKGFLEEIGSETVSFSNNFDGSQTEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD  VA++ N DI    L +II+GPDFPTG  ++    I+  Y TG+GS+ I
Sbjct: 182 PPHNLGEIVDSLVALVKNNDISNKKLSKIIQGPDFPTGGELIHSAAIEELYETGKGSLTI 241

Query: 251 RGVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV ++E     K    +  +++TE+PYQ++KA  +EK+AELV   +I  I+D+RDESDR
Sbjct: 242 RGVINMEEVNLGKGKHKKNALIITELPYQISKAGWIEKLAELVNSGKIHGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP + +L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLSLKKYLNFFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    ++  +L GL+ A  N+ +VV II  S N   A+ +L++      
Sbjct: 362 EETIRKRTFYFLKNTLEKLEILEGLSKATKNIKKVVAIIEESENSVEAKSKLIK------ 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                 +LSE Q  ++L++ L +LT L ++ I NE+ +L
Sbjct: 416 --------------------NFFLSEKQASSVLDMPLRKLTNLEKNQIDNEIINL 450


>gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA3]
 gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08]
          Length = 841

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 271/739 (36%), Positives = 403/739 (54%), Gaps = 73/739 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M  MGV  +
Sbjct: 7   DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPD 66

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + +VK AR+ G+VMG+ HPH +AAIYDAL R AQ W++RL L++G GNFGS+D  P AA 
Sbjct: 67  RPHVKSARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDAGP-AAM 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTECR+      ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  GIAVGMAT
Sbjct: 126 RYTECRMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E+V     ++D+PD  LD +M  + GPD PTG  I+G  G+ +AY TGRGS 
Sbjct: 186 NIPPHNLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGGRIIGLDGVADAYRTGRGSF 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307
            IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++D +D   G
Sbjct: 246 KIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLANG 305

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+K G + + +L +LY+ T L+  F+ N V L   +P    LI +L+ ++  R E
Sbjct: 306 TRLVIEVKNGINPEALLERLYKLTKLEDSFATNAVCLVEGQPRTLGLIDMLQVYLDHRLE 365

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V +RRTK+ L+KA+DR H++ GL +A+ ++D+V+ IIR S +  TAR  +M+        
Sbjct: 366 VTLRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTRVME-------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L EVQ   IL+++L RLT     ++ +E + L   I+  
Sbjct: 418 ------------------AFDLDEVQANYILDMQLRRLTKFSTIELESERDELRERIEGL 459

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------EGLLDMEDEDCIVREDM 538
             I + ++ L  ++  EL  V  +  TPRRT ++            L++ D+ C V    
Sbjct: 460 TLIANDKTELRRVVSGELAEVSAKYGTPRRTVLLGAAPSVAAASVPLEVPDDPCWVLLSA 519

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL----FFSS 594
              ++ +     +P +  RA                    D+ I ST T+        +S
Sbjct: 520 TGLLARIDSADNLPATGDRASH------------------DVIISSTRTTARGDFGIITS 561

Query: 595 LGFVYKEKV---WRLPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +  V     LP+ +     A G  L +++ L + ER   +        S     +
Sbjct: 562 AGRLVRAHVVDLASLPMTATAPSVAGGTPLADLVGLEKDERALAVTSL-----SGKGPSL 616

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T++G V+R    + +  +    I +K D  + + ++E    + ++   T+    + F
Sbjct: 617 ALGTRNGIVKRVN-PELLGKDSWEIIGLK-DGDEVVGALELDDDDLELCFVTQGAALLHF 674

Query: 709 PISAIRVFAGRNSVGVRGI 727
           P SA+R   GR+  GV GI
Sbjct: 675 PASAVRP-QGRSGGGVAGI 692


>gi|298346916|ref|YP_003719603.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|298236977|gb|ADI68109.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 844

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 299/789 (37%), Positives = 418/789 (52%), Gaps = 103/789 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD   E+ I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  
Sbjct: 2   SDSSLER-IQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTP 60

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA
Sbjct: 61  DKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAA 119

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMA
Sbjct: 120 ARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAEFPNLLVNGANGIAVGMA 179

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY  GRG 
Sbjct: 180 TNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYENGRGI 239

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
            + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR  
Sbjct: 240 FITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTH 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R 
Sbjct: 300 GMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRV 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM        
Sbjct: 360 EVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLM-------- 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                              T++ LSE Q   ILELRL RLT   R ++  E + L   I 
Sbjct: 412 -------------------TVFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIA 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   IL+S  +L  +++ ++      L TPRRT ++E     ED   +   +D  + V  
Sbjct: 453 ELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLE-----EDGSAVAASKDAALPVLG 507

Query: 545 LGYVKRVPLSVYRAQRR---GGKGR------SGVVMRDEDFVTDLF-IVSTHTSVLF--F 592
              V  VPL V     R   G  GR      +G V R E F + +   + THT   F   
Sbjct: 508 AMTVSDVPLEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGVV 567

Query: 593 SSLGFVYKEKVWRLPI----------------------------------------GSPQ 612
           +S GFV +  V  LP                                         G+PQ
Sbjct: 568 TSSGFVVRLDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQ 627

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
               A      L  GE +  I+   EDE+      V   T  G V+R +  D+       
Sbjct: 628 LSAAA-----RLEDGETVVGILTLDEDET------VGMMTARGIVKRMR-PDYPSTQDRF 675

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I + L+  D+++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL + 
Sbjct: 676 SI-INLEGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEH 733

Query: 733 DQVISMAIV 741
            QVI+ AIV
Sbjct: 734 TQVIAGAIV 742


>gi|315656631|ref|ZP_07909518.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492586|gb|EFU82190.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 844

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 299/789 (37%), Positives = 419/789 (53%), Gaps = 103/789 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD   E+ I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  
Sbjct: 2   SDSSLER-IQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTP 60

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA
Sbjct: 61  DKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAA 119

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMA
Sbjct: 120 ARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMA 179

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY TGRG 
Sbjct: 180 TNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYETGRGI 239

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
            + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR  
Sbjct: 240 FITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTH 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R 
Sbjct: 300 GMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRV 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM        
Sbjct: 360 EVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLM-------- 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                              T++ LSE Q   ILELRL RLT   R ++  E + L   I 
Sbjct: 412 -------------------TVFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIA 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDMVVTVSH 544
           E   IL+S  +L  +++ ++      L TPRRT ++E     ED   +   +D  + V  
Sbjct: 453 ELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLE-----EDGSAVAASKDAALPVLG 507

Query: 545 LGYVKRVPLSVYRAQRR---GGKGR------SGVVMRDEDFVTDLF-IVSTHTSVLF--F 592
              V  VPL V     R   G  GR      +G V R E F + +   + THT   F   
Sbjct: 508 AMTVSDVPLEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGVV 567

Query: 593 SSLGFVYKEKVWRLPI----------------------------------------GSPQ 612
           +S GFV +  V  LP                                         G+PQ
Sbjct: 568 TSSGFVVRLDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQ 627

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
               A      L  GE +  I+   +DE+      V   T  G V+R +  D+       
Sbjct: 628 LSAAA-----RLEDGETVVGILTLDKDET------VGMMTARGIVKRMR-PDYPSTQDRF 675

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I + L+  D+++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL + 
Sbjct: 676 SI-INLEGTDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEH 733

Query: 733 DQVISMAIV 741
            QVI+ AIV
Sbjct: 734 TQVIAGAIV 742


>gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
 gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
          Length = 781

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/717 (36%), Positives = 408/717 (56%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  N  ++K A+ISG+ MG +HPH
Sbjct: 30  YLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSNGGFLKSAKISGDTMGDFHPH 89

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 90  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAEAMLEGLSE 149

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG   EP VL A +PN+L NG  GIAVGMATNIP HN+ E++D CV +I  
Sbjct: 150 DAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELIDACVHLIKT 209

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG +I+  +  I  AY+TGRGS  +R    +E     + QIV
Sbjct: 210 PDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRAKHEVEDLGRGQWQIV 269

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K++  +AD+RDES  +  R+++E K +    DV++N 
Sbjct: 270 VTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDES-AEDIRIILEPKSKNVDPDVLMNM 328

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           ++R + L++ FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR+++ + K   R  
Sbjct: 329 MFRNSDLETRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMAKIDHRLE 388

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   LM+  W     +D      ++ Y   + G
Sbjct: 389 VLEGFIIAFLNLDRVIDIIRYDEDPKAA---LMREDWG----QDHPRAFSEAEYVSPAKG 441

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
           T  LSEVQ  AIL +RL  L  L   ++  E ++L  E    +++L S       I ++L
Sbjct: 442 TGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGSEELQWTRITEQL 501

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +         RRT   E   + ++  E  I +E + V  S +G+V+ +   +  +
Sbjct: 502 RETKKQFGKDYEGGARRTLFAEAGEVEEVPLEAMIDKEPITVVCSQMGWVRAMTGHIDLS 561

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+ +
Sbjct: 562 RE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGG--RGMGEPV 611

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +  ++  PE         ++ A+  GN       + +   RSGK  + 
Sbjct: 612 RLMVDLPNEAEIVDLLIHNPEGR-------LLVASDAGNGFICAEKEIVAQTRSGKQVLN 664

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   D+   +    Q + + + ++ G+ + F +  +   +    V ++  ++A+G Q
Sbjct: 665 VKD-DDRAKICIPVQGDHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQ 720


>gi|313904178|ref|ZP_07837557.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470980|gb|EFR66303.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 744

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 265/730 (36%), Positives = 403/730 (55%), Gaps = 44/730 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M+++G  +++ Y K ARI G+ MGK
Sbjct: 13  MQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMLELGTYFDRPYRKAARIVGDTMGK 72

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143
           YHPHG+++IYDAL  MAQD+   + L++G GNFGS++GD  AA RYTE RLQK      L
Sbjct: 73  YHPHGDSSIYDALVVMAQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEARLQKFTQEVYL 132

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ V+F PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IP HNLGEV+D   
Sbjct: 133 KDLDKNVVNFVPNFDETEKEPEVLPVRVPNILVNGSDGIAVGMATSIPPHNLGEVIDAAK 192

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A I N D+    LM+ I+GPDFPTG +++ +  +   Y +G G I IRG   +EK    R
Sbjct: 193 AYIGNKDLTDRQLMKYIKGPDFPTGGIVVNKDDLPQIYESGSGKIRIRGKVEVEKGKNGR 252

Query: 264 EQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           + +V+TEIPY +   N    L  +A LV  ++  +I D+ + S ++G R+V+ELK+GA  
Sbjct: 253 QSLVITEIPYTMIGANIGKFLMDVAGLVENRQAPEIVDISNMSSKEGIRIVLELKKGADV 312

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+ G +PE  +L  +L  F  F+ E+  R+ + +L K 
Sbjct: 313 ERLKNLLYKKTRLEDTFGVNMLAVAGGRPETLSLKKVLDNFTDFQFELATRKYQQMLQKE 372

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            ++  V  GL  AV  +D ++ I+R S + +  R  L         + D I+    SS  
Sbjct: 373 LEKKEVQEGLIKAVDVIDLIIEILRGSKSQKQVRDCLTM------GVTDGINFKHKSSEK 426

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              +  +  ++ Q  AILE+RLA+L GL  D +  E      +I    +IL+    + G+
Sbjct: 427 QAKE--LCFTQRQATAILEMRLAKLIGLELDALYKENEETIAKIARYENILNDYDTMAGV 484

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTVSHLGYVKRVPL 553
           I  +L  +K    TPR+T I       E+ + IV         ++V  +   GYV+ V  
Sbjct: 485 IVDDLEQIKKNYATPRKTVI-------ENAEAIVLAEPEEEETELVFLMDRFGYVRTVDT 537

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           SVY   +      +  +          F   +   V  ++  G ++  KV  +P    + 
Sbjct: 538 SVYDRNKEAADAENKYI----------FHCMSTDRVCVYTDNGMMHTIKVKDIPFTKFRD 587

Query: 614 RGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N+ + +   ER+    P  E +       +VF T  GNV+    S+F  +NR  
Sbjct: 588 KGTPIDNLCNYSADNERVVFAGPMAEVKQKK----LVFVTASGNVKIVSGSEF-DVNRKV 642

Query: 673 KIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A KL D  D ++ V      + +++ ++ G  +RFP++ I     + +VGVRGISL K
Sbjct: 643 ISATKLADDADSVVLVGYADAGDFLVIQSRDGYFLRFPMTEIPE-KKKTAVGVRGISLGK 701

Query: 732 GDQVISMAIV 741
            D+  +  +V
Sbjct: 702 DDEAEAAYLV 711


>gi|156181152|gb|ABU54855.1| GyrA [Bacillus licheniformis]
          Length = 341

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/341 (58%), Positives = 268/341 (78%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+A+ RMAQD++ R  L++G GNFGSVDGD  AA RYTE R+ K +  
Sbjct: 61  IGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG
Sbjct: 121 ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV  NPDI L  L+EII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS 
Sbjct: 181 VLAVSKNPDITLPELVEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+RGA+A+
Sbjct: 241 GKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRGANAN 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++
Sbjct: 301 VLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYL 341


>gi|229825734|ref|ZP_04451803.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
 gi|229790297|gb|EEP26411.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
          Length = 745

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 278/771 (36%), Positives = 444/771 (57%), Gaps = 47/771 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I     ++EM+NSY  Y+++VI+ RA+PD+RDGLKPV RRIL+ M ++G+  +K++ 
Sbjct: 4   EENIIIQDFSEEMKNSYRDYSVSVIISRALPDVRDGLKPVQRRILYAMNELGLAPDKQHR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYDAL  MA++WS+ + L++G GNFGS+DGD  AA RYTE
Sbjct: 64  KSARIVGDTMGKYHPHGDSSIYDALVHMAEEWSMSVPLVDGHGNFGSIDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL  L ++ VDF PN+D   +EPV+L A+ P +L+NG  GIAVGMATNIP 
Sbjct: 124 ARLSKGAMNLLTGLDRNLVDFVPNFDEREKEPVILPAKLPFLLINGTTGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN GE++ G +A++DNP++  + LM+ I GPDFPTG +I     I N Y  G G + +RG
Sbjct: 184 HNPGEIIKGAIALLDNPELTTEKLMKYIPGPDFPTGGIIANADEIANIYENGEGRLRVRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              IE     ++ IV+TEIP+    NK+ ++E +  L+++K   +IAD+RDES     R+
Sbjct: 244 KYIIEDGEYGKKNIVITEIPFTSTGNKSRLVESLVNLMKDKVFDEIADVRDESSSD-VRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+G + + +LN +++ T L+  +SVNM+A+   +P+ F+L GIL+ F+ F EE+  
Sbjct: 303 VVEVKKGRNVENLLNGIFKKTPLEDTYSVNMLAVRDKQPKIFSLKGILEEFLGFEEELYT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   +LL KA+ RA V+ GL  AV  +D ++ ++R S + + A+  L+  + N ++IK  
Sbjct: 363 KEYTHLLEKAKSRAEVVEGLIKAVDVIDLIIEVLRGSESIKQAKDCLV--NGNIAEIK-- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                 S  +  +      +E Q  AIL + L+RL GL    +  E  +L   I+E   I
Sbjct: 419 ----FKSEASKKAAKEFDFTEPQADAILAMPLSRLIGLEVLKLSTEAENLKQNIEEYNKI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE---DCIVREDMVVTVSHLGY 547
           LS ++ L  +IK +L +     + PRRT     LL+ E +   + +  ED+ V +   GY
Sbjct: 475 LSDKTELHRVIKTDLKANVKNFEKPRRTE----LLNEEKQVYVEEVKEEDVYVLIDRFGY 530

Query: 548 VKRVPL-SVYRAQRRG-GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            K V + S+ +A      +  + ++M++ D             +  F++ G +++ K   
Sbjct: 531 AKSVDVSSISKANEEALNEYPTKIMMKNTD------------RICIFTASGNMHQVKAKD 578

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P    + +G  + NI  + + E I     F E   S     V FAT+ G V+     +F
Sbjct: 579 IPKVRLRDKGTLVHNISKVGK-EEIILYTSFAELFESM----VFFATRKGFVKLVSGVEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              NRS  +A KL+  DE+LSV      E  + +  + + TK    + + +  + V   +
Sbjct: 634 -DTNRSVMLATKLEEGDELLSVRVLSAAEILSHDLRVYMLTKKKIGLSYLLDEV-VEMKK 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHA--DADYDERICYMKHMSAQRRLISGD 768
           +  GV+GISLA+ D+V  +A+ + A  + ++D     +     ++R   GD
Sbjct: 692 SGRGVKGISLAEDDEVKGVAVEISATTEVEFDGDSYKVAKFKLKKRAAKGD 742


>gi|300741347|ref|ZP_07071368.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300380532|gb|EFJ77094.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 842

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 267/721 (37%), Positives = 402/721 (55%), Gaps = 61/721 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM++S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK A
Sbjct: 20  IVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++GEVMGK HPHG+AAIYDA+ R+AQ +++RL L++G GNFGS+D D PAA RYTE R+
Sbjct: 80  RVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 APAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G   +I +PD  L  +M+ I GPD P+G  I+G +GIK+AY +GRG+   R    
Sbjct: 199 REVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIVGLSGIKDAYESGRGTFKTRAKVS 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE+ +  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR+ G R+VIE+
Sbjct: 259 IEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLVIEI 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G +   +L  LY++T L+  F +N VAL   +P+   L+ +L+ ++  R  VV RRT+
Sbjct: 319 KNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQPQTLGLLDLLRVYIDHRLSVVRRRTE 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV+ IIR S     AR +LM                
Sbjct: 379 FRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLM---------------- 422

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ   ILELRL +LT   R ++  E + L  EI E   IL S 
Sbjct: 423 ----------AVFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSD 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV--- 551
           S L  ++  EL  V ++    RRT +++   DM+     V          LG    +   
Sbjct: 473 SALRELVSDELAEVAEKYGNDRRT-VLKTKDDMQSAIEAVSNGASKAKKSLGLALEIADE 531

Query: 552 PLSVYRAQRRGGKGRS-GVVMRD----------EDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           P  V      G  GR+ G  MR+           D  T +   +    +   +S G + +
Sbjct: 532 PCWVLLTA-SGILGRTVGKPMREALIDPGKRIKHDVFTSIVPTTARGEIGAVTSTGRMVR 590

Query: 601 EKVWRLPI-----GSP-QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             V  L +     G+P    G     +++L +GE++  ++P         N  +  AT +
Sbjct: 591 LSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPL--------NEVLALATAN 642

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAI 713
           G ++R  ++    +N++    +KL  +D +++   C+ +++ L L T+  + + F  + +
Sbjct: 643 GVIKR--VNPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKV 700

Query: 714 R 714
           R
Sbjct: 701 R 701


>gi|260656380|pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
 gi|260656381|pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
          Length = 470

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/492 (46%), Positives = 313/492 (63%), Gaps = 31/492 (6%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY
Sbjct: 4   SVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIY 63

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D+L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +L ++ ++TVDF 
Sbjct: 64  DSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFI 123

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID-- 212
           PNYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HNL E+ D     ++N D D  
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEE 183

Query: 213 --LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             L A+M  ++GPDFPT  +I+G  G  +AY TGRGSI +RGV  +E+ S  R  +V+TE
Sbjct: 184 ETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITE 243

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYR 329
           +PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R+VIE+KR A A V++N LY+
Sbjct: 244 LPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYK 303

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           +T LQ+ F  NM+A+    P    L  +++ +V  + +V+VRRT Y L KA +RAH+L G
Sbjct: 304 HTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRG 363

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L  A+  LDEV+ +IR S   + AR               LI+L+D             +
Sbjct: 364 LVKALDALDEVIALIRASETVDIAR-------------AGLIELLD-------------I 397

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
            E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL  + 
Sbjct: 398 DEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIV 457

Query: 510 DELDTPRRTRIV 521
           D     RRTRI+
Sbjct: 458 DRHGDDRRTRII 469


>gi|311113428|ref|YP_003984650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944922|gb|ADP41216.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 842

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 267/721 (37%), Positives = 402/721 (55%), Gaps = 61/721 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM++S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK A
Sbjct: 20  IVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVKSA 79

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++GEVMGK HPHG+AAIYDA+ R+AQ +++RL L++G GNFGS+D D PAA RYTE R+
Sbjct: 80  RVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEARM 138

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 139 APAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPHNL 198

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G   +I +PD  L  +M+ I GPD P+G  I+G +GIK+AY +GRG+   R    
Sbjct: 199 REVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIVGLSGIKDAYESGRGTFKTRAKVS 258

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE+ +  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR+ G R+VIE+
Sbjct: 259 IEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLVIEI 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G +   +L  LY++T L+  F +N VAL   +P+   L+ +L+ ++  R  VV RRT+
Sbjct: 319 KNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQPQTLGLLDLLRVYIDHRLSVVRRRTE 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K +DR H++ GL IA+ ++DEV+ IIR S     AR +LM                
Sbjct: 379 FRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLM---------------- 422

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ   ILELRL +LT   R ++  E + L  EI E   IL S 
Sbjct: 423 ----------AVFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILGSD 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV--- 551
           S L  ++  EL  V ++    RRT +++   DM+     V          LG    +   
Sbjct: 473 SALRELVSDELAEVAEKYGNDRRT-VLKTKDDMQSAIEAVSNGASKAKKSLGLALEIADE 531

Query: 552 PLSVYRAQRRGGKGRS-GVVMRD----------EDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           P  V      G  GR+ G  MR+           D  T +   +    +   +S G + +
Sbjct: 532 PCWVLLTA-SGILGRTVGKPMREALVDPGKRIKHDVFTSIVPTTARGEIGAVTSTGRMVR 590

Query: 601 EKVWRLPI-----GSP-QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             V  L +     G+P    G     +++L +GE++  ++P         N  +  AT +
Sbjct: 591 LSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPL--------NEVLALATAN 642

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAI 713
           G ++R  ++    +N++    +KL  +D +++   C+ +++ L L T+  + + F  + +
Sbjct: 643 GVIKR--VNPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKV 700

Query: 714 R 714
           R
Sbjct: 701 R 701


>gi|319937327|ref|ZP_08011734.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
 gi|319807693|gb|EFW04286.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
          Length = 885

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 262/734 (35%), Positives = 410/734 (55%), Gaps = 47/734 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK IT  S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +NK Y 
Sbjct: 3   EKIITQ-SLDDIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYAMYKEGNTYNKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ R++Q+W +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 62  KSAKTVGNVIGNYHPHGDTSVYDAMVRLSQEWKMRIPLVDMQGNNGSIDNDPAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K+TV    N+D +  EP V+ A+YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 ARLSAIAAELLKDIDKETVQMALNFDDTEYEPTVVPAKYPNLLVNGATGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  + +P   LD LME ++GPDFPTGA++ G+ GI+ A+  GRG +V+R 
Sbjct: 182 HNLEEVIDATIYRLSHPHCSLDKLMEFMKGPDFPTGAIVEGKQGIRTAFEKGRGKVVVRS 241

Query: 253 VSHI--EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            + I  EK      +I+V+EIPY+VNKA ++ K+ E+   K +  I ++RDESDR G  +
Sbjct: 242 KTEIIHEKNMN---KIIVSEIPYEVNKAELVRKLDEIRFNKSVDGIIEVRDESDRNGLSI 298

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LK+       LN  ++ T LQ  ++ NMVA+   +P    +  IL  ++  + EV+ 
Sbjct: 299 VIDLKKDVDVQNTLNYFFKNTDLQKNYNYNMVAIKDKRPVCMGIEAILDGYIQHQIEVIT 358

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+ + LNKA +R H++ GL  AV+ LD+VV  IR S + + A+                
Sbjct: 359 KRSIFDLNKAEERKHIVDGLIKAVSILDDVVHTIRHSKDKQDAK---------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     I        +E Q+ AI+ L+L RLT      +  E   L   I+   DI
Sbjct: 403 ----------INIQTQFGFTEKQSEAIVTLQLYRLTNTDIVSLEKEKEELESLIQTLNDI 452

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L+S   L  +I  EL ++K +  +PR T I + + +  + +E  I+ ED+ V+++  GY+
Sbjct: 453 LNSDQVLRKVIVDELKNIKKQYPSPRLTEIKDEVQEIIINEEAMILPEDIYVSITQDGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    Y+A      G+     +D+D + DL   +T   +L F+  G      + +L  
Sbjct: 513 KRISQRSYKASENTLFGK-----KDDDVLVDLHFANTLDKLLVFTDKGNYMYIPLHKLEE 567

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  GK +  ++ ++  E+I   +     +S    LY++ A++ G ++R +L +F  +
Sbjct: 568 FKWKELGKHISYLIKVSPEEKIVGSVLV---KSFDYPLYIILASRFGQMKRVELKEF-DV 623

Query: 669 NRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R  K    + L   D +L V     +  I+LTT+ G    +    I V  G  + G++G
Sbjct: 624 TRFTKPMKCINLKKDDSLLQVGLSDGQQGIVLTTQAGYATLYSEQEISVL-GVKAGGIKG 682

Query: 727 ISLAKGDQVISMAI 740
           I+L K D++I+M I
Sbjct: 683 INL-KNDELIAMNI 695



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q I+  ++ G+    S  +  +      GI+  ++ K +E+ A+    P+   D  IL+
Sbjct: 650 QQGIVLTTQAGYATLYSEQEISVLGVKAGGIKGINL-KNDELIAMNIFNPLR-TDSFILI 707

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           SD+  + R+ +++I   +RATKG +IF + K + + S+
Sbjct: 708 SDQPGIKRLRISDIPSCNRATKGNLIFKSPKTKHIQSL 745


>gi|262052165|ref|ZP_06024372.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
 gi|259159909|gb|EEW44946.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
          Length = 800

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/734 (35%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|224543252|ref|ZP_03683791.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523785|gb|EEF92890.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 849

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/735 (35%), Positives = 403/735 (54%), Gaps = 49/735 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK I  +S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   NK Y 
Sbjct: 3   EKNII-MSLEDIMGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMWKEGNLPNKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ R++QDW +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 62  KSAKTVGTVIGNYHPHGDSSVYEAMVRLSQDWKMRMPLVDMQGNNGSIDNDPAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  L+ D+ K+TV    N+D +  EP V  A+YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 ARLAPIALDLIKDIDKETVPMALNFDDTEYEPTVFPAKYPNLLVNGATGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  I +P    D L + I+GPDFPTGA++ G + I  A  TGRG +V+R 
Sbjct: 182 HNLEEVIDATIYRIKHPHCSFDELHQFIKGPDFPTGAIVEGASDIATALRTGRGKVVVRS 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              I +   +  QI++TEIPY+VNKA ++ K+AE+   + I  I ++RDESDR G  + +
Sbjct: 242 RYKIVEQK-NINQILITEIPYEVNKAELVRKMAEIQFNRDIDGIIEVRDESDRNGLCIAV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+   A   LN  ++ T LQ  ++ NM A+   +P    +  IL  ++    EVV +R
Sbjct: 301 DLKKDVDARNTLNYFFKNTDLQKNYNYNMTAIKDKRPVLMGIEDILDGYIKHECEVVTKR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKA++R H++ GL  A++ LDEVV+ IR S +   A+  LM              
Sbjct: 361 SIFDLNKAQEREHIVEGLIKAISILDEVVKTIRASKDKADAKVNLM-------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      + NE   L   I+    IL+
Sbjct: 407 ------------NAFGFTERQAEAIVTLQLYRLTNTDIVSLENEQKELQALIESLNAILT 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  EL  VK +  TPR T I + ++D  +  +  I+ ED+ V+++  GY K+
Sbjct: 455 SEKVLRKVIIDELKGVKKKYPTPRLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGYFKK 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    Y+A      G+     +D D + DLF  +T   +L F++ G      V++L    
Sbjct: 515 ISTRSYKASDENTFGK-----KDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFK 569

Query: 611 PQARGKALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            +  GK L  ++ L   E+I     +  F  D+      YVV ++K+G ++R  + DF  
Sbjct: 570 WKDLGKHLSYLIKLGNDEKIIGNILVKSFDLDQ------YVVLSSKNGQIKRVSIKDF-N 622

Query: 668 INRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           ++R  K    M L   DE++SV+       I+  TK G    +    I +  G  + GV+
Sbjct: 623 VSRFSKPLKCMNLKDNDELISVDISDGTKGIITVTKAGYGTLYSEDEISIL-GVKAGGVK 681

Query: 726 GISLAKGDQVISMAI 740
           GI++ + D+V  M++
Sbjct: 682 GINM-RDDEVAFMSV 695


>gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 956

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/683 (38%), Positives = 387/683 (56%), Gaps = 55/683 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K Y
Sbjct: 9   KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RYT
Sbjct: 69  YKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNIP
Sbjct: 129 EARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +R
Sbjct: 189 PHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQG 307
             + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I D+RDESDR G
Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENITDIRDESDRNG 308

Query: 308 YRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R VIE K+ A+ DVI   L  LY+ T LQS  S NMVAL   KP+   L  +L+ +V  
Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKAMLEYYVEH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  LMQ+    
Sbjct: 369 QKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMQK---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  AILEL L +LTGL       E   L   I
Sbjct: 425 ----------------------FSFTDIQAEAILELMLYKLTGLEIVAFEKEYKELERLI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------IVRED 537
            +   IL+S   LL +IK+EL+ VK+  +  RRT I+E     +DE         IV ED
Sbjct: 463 NKLKKILNSEKELLKVIKKELIEVKETYNDKRRTSIIE-----DDEKAKIDIEEIIVEED 517

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V+T+S+  + KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G 
Sbjct: 518 VVLTLSNESFAKRISLKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGN 574

Query: 598 VYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFP-EDESSWNNLYVVFATKHG 655
           +Y+ KV  +P    + +G  L  I+ +++  E  T I  F  ED  +  ++  +F T  G
Sbjct: 575 MYQIKVINIPEFKWKEKGVKLDEIIKTIDLSE--TIIEAFSIEDFIAQKDM--LFITDSG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKL 678
            +++  L  F   N +  + +KL
Sbjct: 631 YIKKTTLDKF-NTNYTKIMVLKL 652



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 21/183 (11%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+ T VLF        + K + +P    Q   +  INI S+  G++I
Sbjct: 740 LKDNKSHISLFTDSSKTLVLFDD------EGKAYYIPAFMLQGIKEGGINI-SVFTGDKI 792

Query: 631 T-----TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +     +   F ED S      + F+++ G ++R  LS+      S ++       D+++
Sbjct: 793 SLLNAISTFRFEEDIS------IYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLV 846

Query: 686 SV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           S+  +   ++ DIL+ T+    +RF   A+    G+ + GV GISL   D+VI  +I+  
Sbjct: 847 SILIKEHEEQKDILIITEKAMVIRFKSEAVNPM-GKMASGVTGISLKDLDKVILASIIDE 905

Query: 744 ADA 746
            D 
Sbjct: 906 NDT 908


>gi|169350468|ref|ZP_02867406.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
 gi|169292788|gb|EDS74921.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
          Length = 849

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/722 (35%), Positives = 410/722 (56%), Gaps = 50/722 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G    K Y K A+  G V+G 
Sbjct: 13  MGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLATKPYRKSAKTIGNVIGN 72

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA+ R++QDW +R  LI+ QGN GS+D DP AA RYTE RL   A  LL 
Sbjct: 73  YHPHGDTSVYDAMVRLSQDWKMRAPLIDMQGNNGSIDNDPAAAMRYTEARLSPIAVELLK 132

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP HNL EV+D  + 
Sbjct: 133 DLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEVIDATIY 192

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I + +  L+ +ME I+GPDFPTGA++ G+ GI NA+  G+G +++R  + I +   +  
Sbjct: 193 RIKHSNCSLEKIMEFIKGPDFPTGAIVEGKEGILNAFKHGKGKVIVRSKTEIIE-EKNMN 251

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IV++EIPY+VNKA ++ KI E+   + +  I ++RDESDR G R+VI+LK+  S    L
Sbjct: 252 KIVISEIPYEVNKAELVRKIDEIHFNRNLEGIIEVRDESDRNGLRIVIDLKKDISVQNTL 311

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T LQ  ++ NMVA+   +P    ++ IL  ++  + +VV R + Y LNKA+DR 
Sbjct: 312 NYLYKNTDLQKNYNYNMVAIKDKRPVLMGILDILDGYIDHQIDVVTRSSIYDLNKAKDRK 371

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL  A++ LD+VV+ IR S +   A++ LM +                        
Sbjct: 372 HIVEGLIKAISILDDVVKTIRESKDKSDAKKNLMAKYE---------------------- 409

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                SE Q  AI+ L+L RLT      + NE   L  +IK    IL S   L  +I  +
Sbjct: 410 ----FSEKQAEAIVMLQLYRLTNTDIKTLENENEELNEKIKYLNTILDSDEVLRKVIIDQ 465

Query: 505 LLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L ++K +   PR + I + +  + ++++  I+ ED+ ++++  GY+KR+     +A  + 
Sbjct: 466 LKNIKKKYPMPRLSMIRDKIQEVKIDEKAMILSEDVNISITRDGYIKRISNRSIKASEKT 525

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG---FVYKEKVWRLPIGSPQARGKALI 619
             G+     ++ D++  ++  +T   +L FS  G   F+   K+       P   GK + 
Sbjct: 526 PFGK-----KENDYLVSMYKANTLDHLLLFSDAGNYLFIPVHKIEEFKWKDP---GKHVS 577

Query: 620 NILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKI--AM 676
            ++ ++  E+I   +   +    +N  LYV+ ATK+G ++R  L DF ++ R  K    +
Sbjct: 578 YLVKMDSSEKIIASILVKD----FNLPLYVMIATKNGQIKRTLLKDF-EVTRYSKPLKCI 632

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L + D+++ V+    +  I+LTTK G    +    + +  G  ++G++ I+L K D+++
Sbjct: 633 GLKNGDKVVDVKLTNNDQGIILTTKKGYGALYSEQEVSI-VGIKALGIKAINL-KDDELV 690

Query: 737 SM 738
           S+
Sbjct: 691 SL 692



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q I+  ++KG+G   S  +  I      GI+A ++ K +E+ +L    P+ D+  ++L+
Sbjct: 649 DQGIILTTKKGYGALYSEQEVSIVGIKALGIKAINL-KDDELVSLDTFDPMVDH-SLVLI 706

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           SD G + R+ +++I+  +RATKGV++F   K
Sbjct: 707 SDSGGIKRIKISDIKPCNRATKGVMLFKNLK 737



 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           ++ QE+K+ E+ ++   +         Y  RISNRS K    T   K  E   LV+++  
Sbjct: 483 DKIQEVKIDEKAMILSEDVNISITRDGYIKRISNRSIKASEKTPFGK-KENDYLVSMYKA 541

Query: 848 NDNDQIILVSDKGTLIRVPVNEI 870
           N  D ++L SD G  + +PV++I
Sbjct: 542 NTLDHLLLFSDAGNYLFIPVHKI 564


>gi|269836114|ref|YP_003318342.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785377|gb|ACZ37520.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 813

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 285/896 (31%), Positives = 466/896 (52%), Gaps = 105/896 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I +   +   +++++ YA+ V+  RA+PD RDGLKPV RRIL+ M + G   N+  V
Sbjct: 11  EETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTV 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A + G+V+  YHPHG++A+YDA  RMAQD+++R  LIEGQGNFGS+DGD  AA RYTE
Sbjct: 71  KSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAAAAYRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            RL      LL D+ ++TV F   Y    +  +PV L AR P +  N   GIAVG++T+I
Sbjct: 131 MRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPI-CNPSSGIAVGLSTDI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E +   +A++DNP++ +D LM+I+ GPDFPTG  I+G  GI+    +G+G +VI
Sbjct: 190 PPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGTDGIRAYLESGKGRLVI 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYR 309
           RG   +E+    R  +VVTEIP  ++++ ++  I   V + ++  + D+R+ES D +G R
Sbjct: 250 RGEVRLEEELRQR-NLVVTEIP-PISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGTR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPERFTLIGILKAFVA 363
           +V+EL+R A+ +V+LNQLYR+T LQ+  +VNMV L G       +P R  ++ +L+ +  
Sbjct: 308 IVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYWNR 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + +V+ RR +Y L KA++R HV+ GL I  A+ DE+VRI + + +   A +E ++  +N
Sbjct: 368 HQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVA-KEKIKVKYN 426

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +DI                         Q   I  + LA++T L       E   L   
Sbjct: 427 LTDI-------------------------QADVIANMTLAQVTRLDAAKYAEEKKELTKR 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVRE-DMVVT 541
           IKE   +L+S ++ + ++K+EL ++  E    RRTRI  EG  ++     ++ E  +++ 
Sbjct: 462 IKELQALLASEAKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIV 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S  G VK +P + ++      + R+G   R E     +   ST   +L  +  G VY  
Sbjct: 522 ASQSGRVKALPENAFK------RARAGRTARGEGLAA-IVPASTLDYLLVLTRGGRVYLS 574

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   +P G+  + G+    +  L   E + TI+P  E      + YVV+ T +G V++  
Sbjct: 575 RGHEVPAGTRASSGEPAQKVFGLKPDEALATILPVNE---LTEDRYVVWFTANGKVKKTS 631

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+++  I  +G   ++L   D +++        + L+    GQ +RF    +R   GR+ 
Sbjct: 632 LAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFADDEVRA-TGRDG 690

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV  I+L  G +V++ A+ +   +D D  +   + M  +           T+LK     
Sbjct: 691 QGVNAIALKAGAEVVT-ALAIPPKSDGDVLVVTAQGMGKR-----------TALK----- 733

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                             DF    R+  G+ A  ++K + I   
Sbjct: 734 ----------------------------------DFPARRRATAGVAAITLAKGDRIAGA 759

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V P   +D ++L +  G  ++V V ++R   RATKG  +   AK++ V ++ R+
Sbjct: 760 ALVTP---DDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLLEVAKNDHVATIARV 812


>gi|283797753|ref|ZP_06346906.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291074428|gb|EFE11792.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 746

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 273/761 (35%), Positives = 427/761 (56%), Gaps = 41/761 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 5   IIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD   A IDNP++  + L+  + GPDFPTG +I  +  + + Y TG G I +R   
Sbjct: 184 LGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGIIANKKDLASIYETGSGKIKLRAKM 243

Query: 255 HIE--KTSGDREQIVVTEIPYQ-----VNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +E  K   D++++V+TEIPY      +NK  M   IAELV  K++ D+ D+ ++S+++G
Sbjct: 244 EVELGKRKADKDKLVITEIPYTMIGAGINKCLM--DIAELVESKKLTDVVDISNQSNKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ E
Sbjct: 302 IRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVKGRPETLNLRGILKNYLDFQYE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+ + LL K  ++  +  GL  A   +D ++ ++R S N + AR  L+    +A   
Sbjct: 362 NNTRKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDARACLINGDTSAIRF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K   +L +D+       G +  +E Q  AILE+RL +L GL    +  E      +IKE 
Sbjct: 422 K-TPELEEDA-------GKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             ILS +  +  +IK++L ++K E   PRRT I +G   + DE  +   ++V  +   GY
Sbjct: 474 EKILSDKGTMDQVIKEDLAAIKREFACPRRTLIEDGKEAVYDESAVEVREVVFVMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS-VLFFSSLGFVYKEKVWRL 606
            + V  S Y   R   +  +  V           I   +T  +  F+  G +++ KV  +
Sbjct: 534 SRIVDRSTYDRNRETIENENPHV-----------ICCLNTDRICLFTDAGVLHQVKVTDI 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+G  + +G  + N+   + G +  T+  F  + SS      +FAT+   ++R    +F 
Sbjct: 583 PLGKLRDKGTPIDNLCKFD-GTKEQTV--FVTNASSLQGKLFLFATRDAMLKRVPGEEF- 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           + N     A KL   D ++SV+   + ++++L T  G  +RF +  I V   +N+ GVRG
Sbjct: 639 ETNNRMVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISV-QKKNARGVRG 697

Query: 727 ISLAKGDQVISMAIVLHADAD----YDERICYMKHMSAQRR 763
           I L +G + +    +L A+ +    Y E+  ++  +   RR
Sbjct: 698 IKLGRG-EALEQVYLLGANTESVITYKEKQVHLNRLKQGRR 737



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 20/114 (17%)

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G  E+   + N SS++G              +  L  +     KR    +F  +NR    
Sbjct: 602 GTKEQTVFVTNASSLQG--------------KLFLFATRDAMLKRVPGEEFETNNR---- 643

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                 +K+ E  +LV+V P ++  +++L +D G  +R  ++EI +  +  +GV
Sbjct: 644 --MVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGV 695


>gi|148272833|ref|YP_001222394.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830763|emb|CAN01703.1| putative topoisomerase II subunit A [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 848

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 290/750 (38%), Positives = 416/750 (55%), Gaps = 67/750 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + DE  E+ I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+ 
Sbjct: 9   TPDEPAER-IEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSEMGLR 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VK AR++GEVMGK HPHG++AIYDA+ RMAQ ++LR+ LI+G GNFGS+D D PA
Sbjct: 68  PDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQSFTLRVPLIDGHGNFGSLD-DGPA 126

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  +A  +++ L +D VDF PNYD +F +P VL A +PN+LVNG  GIAVGM
Sbjct: 127 APRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGASGIAVGM 186

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL EVV     +ID+PD  LD LM  + GPD PTG  I+G +G+K+AY TGRG
Sbjct: 187 ATNMVPHNLIEVVGAARHLIDHPDASLDDLMSFVPGPDLPTGGTIIGLSGVKDAYLTGRG 246

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R    +E  +  +  +VVTE+PY V    ++EKI + V+ K++  I ++ D +DR 
Sbjct: 247 SFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNVTDLTDRT 306

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G + + +L QLYRYT L+  FSVN VAL    P+   L  +L+ +VA R
Sbjct: 307 HGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSVNNVALVDGSPQTLGLKELLQVYVAHR 366

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT+Y L + ++R H+++GL IA+ ++DEV+++IR S + E AR  LM       
Sbjct: 367 LEVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLM------- 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
              D+ D                LS +Q   ILELRL RLT   R ++  E + L  EI 
Sbjct: 420 ---DVFD----------------LSTLQADYILELRLRRLTRFSRIELEEERDRLQAEIA 460

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------------LLDMEDED 531
           E   IL+   RL  ++  EL  V D   TPRRT + E               +L++ D  
Sbjct: 461 ELEAILADPRRLRALVSTELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPVLEIADVP 520

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
           C       V +S  G   RV L         G     V     D V      ++ T +  
Sbjct: 521 C------RVLLSTTGRAVRVDLPTDAP----GTPLQTVRRSSHDAVLTAIETTSRTRIGA 570

Query: 592 FSSLGFVYKEKVWRL---PIGSPQ-ARGKALINILSL-NQGERITTIMPFPEDESSWNNL 646
            ++ G +       L   P+ S Q   G  + + L L ++ ER+  ++    DE+     
Sbjct: 571 ITNTGRLITMTPVDLPVVPVASVQLGAGVRIRDYLGLADRKERVVALVALGTDEA----- 625

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   T+ G V+R   S          IA+K    DE++      + ++++  T   Q +
Sbjct: 626 -IALGTRQGVVKRIAPSALPAKPEFEVIALK--KGDEVVGARQGAETDELVFVTSEAQLL 682

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            FP  ++R   G  + GV G++L  G +V+
Sbjct: 683 HFPAVSVRP-QGIQAGGVAGVNLGAGARVL 711


>gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 831

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 282/752 (37%), Positives = 409/752 (54%), Gaps = 68/752 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE+ E+ I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  
Sbjct: 10  TDEDFEERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRP 69

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ +VK +R+ G+VMGK HPHG+ AIYDAL RMAQ +S+RL LI+G GNFGS D D PAA
Sbjct: 70  DRGHVKSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-DLPAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  ++  + +DTVDF+PNYDG   EP V+ + +PN+LVNG  GIAVGMA
Sbjct: 129 MRYTEARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIAVGMA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+  HNL EVV     +I  PD  LD LM  + GPD PTG  I+G  GI++AYA GRG+
Sbjct: 189 TNMAPHNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTIIGLDGIRDAYAKGRGT 248

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
             +R    +E+ S  R+ I+VTE+P+ V    ++ KI ELV  K++  I+DL+D SDR +
Sbjct: 249 FRMRAKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLSDRHK 308

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G  +VIE+K G   + +L +LYR T ++  F +N VAL   +P    L  +L+ +V  R 
Sbjct: 309 GLNLVIEIKNGFIPEAVLEELYRLTPMEETFGINNVALVEGQPRTLGLRELLQVYVDHRL 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR+ Y   K  DR H++ GL IA+ N+DEV+++IR S +   AR  LM+       
Sbjct: 369 DVVRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLME------- 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q   IL+  L RLT   + ++  E  +L  EI E
Sbjct: 422 -------------------VFELSEIQAAYILDTPLRRLTRFDKLELDGEKETLESEIAE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------LLDMEDEDCIVRED 537
              ILSS  +L  ++  EL  V     TPRRT ++E           L++ D+ C+    
Sbjct: 463 LTAILSSEDKLRKVVSDELAQVSKTFGTPRRTVLLESSGVTRNASVPLEVADDPCL---- 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             V  S  G + R       A    G+G RS       D +  +   +    V   ++ G
Sbjct: 519 --VLFSSTGLLAR----TTDASPLAGEGDRSA-----HDVLVSVVNSTVRGEVGVVTNQG 567

Query: 597 FVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + +V  LP   P A       G  +   ++L+ GE +  I     D        +  
Sbjct: 568 RMIRVQVVDLPTLPPSANPPSLSGGHPVSEYVTLSPGETVVGIGSLDPDGPG-----LAL 622

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
            T  G V+R  + D+   NR     + L   D ++ +VE  ++++D++  T   Q +R+P
Sbjct: 623 GTAQGVVKR-VVPDY-PANRDDFEVIGLKDGDTVVGAVELTSEDHDLVFITSEAQLLRYP 680

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              +R   GR + G+ G+ L  G  VI   +V
Sbjct: 681 AVNVRP-QGRPAGGMAGVRLDGGATVIWFGVV 711


>gi|15926935|ref|NP_374468.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|258434733|ref|ZP_05688807.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|258444691|ref|ZP_05693020.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282892846|ref|ZP_06301081.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
 gi|296275474|ref|ZP_06857981.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|20178001|sp|Q93KF4|PARC_STAAN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13701152|dbj|BAB42447.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|257849094|gb|EEV73076.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|257850184|gb|EEV74137.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282764843|gb|EFC04968.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
          Length = 800

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|282916616|ref|ZP_06324374.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770422|ref|ZP_06343314.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319103|gb|EFB49455.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460569|gb|EFC07659.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|302332971|gb|ADL23164.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 800

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|323441139|gb|EGA98846.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O11]
 gi|323444007|gb|EGB01618.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O46]
          Length = 800

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 110/248 (44%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGA--LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN      +V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEDVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|145308239|gb|ABP57383.1| gyrase A [Brucella abortus]
          Length = 284

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/284 (70%), Positives = 240/284 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQ
Sbjct: 181 ELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           VNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A
Sbjct: 241 VNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDA 284


>gi|297207991|ref|ZP_06924422.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887234|gb|EFH26136.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 800

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEIILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|282920623|ref|ZP_06328344.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
 gi|282594285|gb|EFB99272.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
          Length = 800

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/734 (35%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|57650359|ref|YP_186243.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195080|ref|YP_499880.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221480|ref|YP_001332302.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509520|ref|YP_001575179.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253733398|ref|ZP_04867563.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451753|ref|ZP_05699777.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|262049828|ref|ZP_06022691.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300912075|ref|ZP_07129518.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81694551|sp|Q5HG64|PARC_STAAC RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|114152111|sp|Q2FYS4|PARC_STAA8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777321|dbj|BAA11087.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
 gi|57284545|gb|AAW36639.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202638|gb|ABD30448.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374280|dbj|BAF67540.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368329|gb|ABX29300.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728666|gb|EES97395.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257860584|gb|EEV83408.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|259162052|gb|EEW46631.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300886321|gb|EFK81523.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315196387|gb|EFU26739.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140313|gb|EFW32171.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143914|gb|EFW35686.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329730889|gb|EGG67265.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733685|gb|EGG70013.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 800

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|225572726|ref|ZP_03781481.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039899|gb|EEG50145.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
          Length = 748

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 258/744 (34%), Positives = 402/744 (54%), Gaps = 30/744 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E+   I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   QEKNDQIIRTDYAEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGQTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RLQK      L DL K+ VDF PN+D + +EP VL  + PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLQKLTQEVYLADLDKNVVDFIPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+DG  A + N DI    LM  I+GPDFPTG +++ +  ++  Y TG G I
Sbjct: 182 SIPPHNLGEVIDGVKAYMKNNDITTKGLMRYIKGPDFPTGGIVVNQDELRKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG   IEK  G R  +V+TEIPY +   N    L  +A LV  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEIEKAKGGRLHLVITEIPYTMIGANIGKFLNDVATLVESKKTTDILDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+EL+R    D ++N LY+ T L+  F VNM+A+   +PE  +L  +++  V F+
Sbjct: 302 EGIRIVLELRRDTDVDNLVNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQVVEHHVEFQ 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+ + LL+K  ++  V  GL  AV  +D ++ I+R S N +  ++ L        
Sbjct: 362 FEIANRKYRTLLDKELEKKEVQEGLMKAVDVIDLIIEILRGSKNQQQVKKCLTTGETEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +  +   +  +E Q  AILE+RL RL GL  + +  E  +    I 
Sbjct: 422 RFK--------SKASQKAAAQLRFTERQATAILEMRLYRLIGLEMEALLKEHEATLEHIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  D+L++   +   I  EL +VK E    RRT +      + +E  I   ++   +   
Sbjct: 474 KYEDLLNNYDSMAQAIMNELDAVKKEFGRKRRTALENAQEAVFEEKKIEEMEVWFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK +    Y   +      S            LF       +  F+  G ++  KV  
Sbjct: 534 GYVKTIDRQTYERNKENACSESKY----------LFSCMNTDRICIFTDAGRMHAVKVLD 583

Query: 606 LPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G  + N+ + N Q E+I  +    E + S     ++FAT+   +++    +
Sbjct: 584 IPLVKFRDKGVPVDNLSNYNSQEEQILYVAGMEELKHSQ----LLFATQKAMLKQVSGQE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +   +A KL   D+++ V        ++L +  G  +RF    +     + ++GV
Sbjct: 640 F-DVTKRTIMATKLTEGDKVIFVAPSDAMEYVVLQSTQGYFLRFLKQEVPE-KKKGAIGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADY 748
           RG+ L + DQ +  A +L    +Y
Sbjct: 698 RGMRLGEQDQ-LEHAYLLEGHTEY 720


>gi|49486198|ref|YP_043419.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81649352|sp|Q6G9K4|PARC_STAAS RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49244641|emb|CAG43072.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 800

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 110/248 (44%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGA--LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN      +V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVVTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|298694655|gb|ADI97877.1| Topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 800

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|170782025|ref|YP_001710357.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156593|emb|CAQ01744.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 848

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 289/755 (38%), Positives = 417/755 (55%), Gaps = 68/755 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H  + DE  E+ I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 5   TTHT-TPDEPSER-IEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMS 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VK AR++GEVMGK HPHG++AIYDA+ RMAQ ++LR+ LI+G GNFGS+D
Sbjct: 63  EMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQPFTLRVPLIDGHGNFGSLD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  +A  +++ L +D VDF PNYD +F +P VL A +PN+LVNG  G
Sbjct: 123 -DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGASG 181

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EVV     +ID+PD  LD LM  + GPD PTG  I+G +G+K+AY
Sbjct: 182 IAVGMATNMVPHNLIEVVGAARHLIDHPDATLDDLMAFVPGPDLPTGGTIIGLSGVKDAY 241

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS   R    +E  +  +  +VVTE+PY V    ++EKI + V+ K++  I ++ D
Sbjct: 242 LTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNVTD 301

Query: 302 ESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G + + +L QLYRYT L+  FS+N VAL    P+   L  +L+ 
Sbjct: 302 LTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSINNVALVDGSPQTLGLKELLQV 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +VA R +VV RRT+Y L + ++R H+++GL IA+ ++DEV+++IR S + E AR  LM  
Sbjct: 362 YVAHRLDVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLM-- 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                   D+ D                LS +Q   ILELRL RLT   R ++  E + L
Sbjct: 420 --------DVFD----------------LSTLQADYILELRLRRLTRFSRIELEEERDRL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------------LLD 526
             EI E   IL+   RL  ++  EL  V D   TPRRT + E               +L+
Sbjct: 456 QAEIAELEAILADPRRLRALVSTELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPVLE 515

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           + D  C       V +S  G   RV L         G     V     D V      ++ 
Sbjct: 516 IADVPC------RVLLSTTGRAVRVDLPTDAP----GTPLQTVRRSSHDAVLTAIETTSR 565

Query: 587 TSVLFFSSLGFVYKEKVWRL---PIGSPQ-ARGKALINILSL-NQGERITTIMPFPEDES 641
           T +   ++ G +       L   P+ S Q   G  + + L L ++ ER+  ++    DE+
Sbjct: 566 TRIGAITNTGRLITMTPVDLPVVPVASVQLGAGVRIRDYLGLTDRKERVVALVALGTDEA 625

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                 +   T+ G V+R   S          IA+K    DE++      + ++++  T 
Sbjct: 626 ------IALGTRQGVVKRVAPSALPAKPEYEVIALK--KGDEVVGARQGAETDELVFVTS 677

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
             Q + FP  ++R   G  + G+ G++L  G  V+
Sbjct: 678 EAQLLHFPAVSVRP-QGVQAGGIAGVNLGAGAHVL 711


>gi|154482536|ref|ZP_02024984.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
 gi|149736561|gb|EDM52447.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
          Length = 801

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 395/679 (58%), Gaps = 29/679 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M Q+G+ ++K + K A
Sbjct: 5   IIKTEYSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYAMDQLGLNYDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  +AQD+   + L++G GNFGS++GD  AA RYTE +L
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVLAQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEAKL 124

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMATNIPTHN
Sbjct: 125 KKFTQDVYLADLDKDVVDFVPNFDETEKEPSVLPVRVPNILVNGAEGIAVGMATNIPTHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A +DN +I  + L++I+ GPDFPTG ++  ++ +K+ Y  G G + +RG  
Sbjct: 185 LGEVVDAVIAYMDNNNITTEELLQIMPGPDFPTGGIVANKSDLKDIYENGTGKLKLRGKL 244

Query: 255 HIEKTSG-DREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRV 310
             EK  G +++++V+TEIPY +  A +   +  + +LV  K+  DI D+ + SD  G R+
Sbjct: 245 EFEKGKGREKDKLVITEIPYTMIGAGIGKFISDVIDLVETKKTTDIVDISNGSDENGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I+K  V F+ E+  
Sbjct: 305 VLELKKGADVEKLKNILYKKTKLEDTFGVNMLAIADGRPEVMGLKSIIKYNVDFQYELAQ 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+   LLNKA ++  +  GL  A   +D ++ IIR S + +  +  L+       DIK  
Sbjct: 365 RKYTTLLNKALEQKEIKEGLIKATNIIDLIIEIIRGSQSQKQVKACLVH--GKTDDIK-- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
               +  S  +   G +  +E Q +AILELRL++L GL    ++ E   L  +I +  DI
Sbjct: 421 --FKNPESEILA--GNLSFTERQAQAILELRLSKLIGLEILALQKEYEELMDKIGQYEDI 476

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R  +   IK++L ++K E   PR+T I +G   + DE+  V +++V      GY K 
Sbjct: 477 LENRKTMTKTIKKDLKAIKKEYALPRKTLIEDGKEAVFDENAFVEQEVVFVQDKFGYSKL 536

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + +             V ++  +    F      S+  F+  G V++ KV  +P   
Sbjct: 537 LDPAAFDRNIES-------VTKENKY---YFRCMNTDSICIFTDNGNVHQIKVSAIPTKK 586

Query: 611 PQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            + +G  + N+ +  +QGE I T++ F        +  ++F TK+G ++    ++F + N
Sbjct: 587 VREKGIPIDNLGNYSSQGESIVTLVSF----DMIKDKKLLFTTKNGMIKLVDGNEF-ETN 641

Query: 670 RSGKIAMKLDSRDEILSVE 688
           R   +A KL   DE++SV+
Sbjct: 642 RKTMLATKLGKDDEVVSVK 660


>gi|170017458|ref|YP_001728377.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
 gi|169804315|gb|ACA82933.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
          Length = 812

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 277/840 (32%), Positives = 440/840 (52%), Gaps = 63/840 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K A
Sbjct: 5   ITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDHPYRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+A+ R++Q+W +R  LI+  GN GS+D DP AA RYTE RL
Sbjct: 65  KSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSIDNDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DLG+DTVD   N+D +  EP VL +R P++L+NG  GI+ G AT IP HNL
Sbjct: 125 SKIAGEMMADLGQDTVDMVLNFDDTTYEPTVLPSRIPSLLINGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+    + ++D+P+    ALM  I+GPDFPTG +I G  GIK AY TGRG IV+R  + 
Sbjct: 185 KEINAALIYLLDHPEAPQSALMRYIKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAKTA 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIEL 
Sbjct: 245 ISELKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVAGISEVRDESDREGMSIVIELN 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ IL  L++ T LQ  ++ NMVA++  +P   +L   L+AF+AFR+EVV++R+ Y
Sbjct: 305 KDTNANGILTYLFKKTDLQIAYNFNMVAIHDQRPVHVSLKQALEAFIAFRKEVVLKRSAY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ R               
Sbjct: 365 ELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIAR--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         ++ Q  AI+ L+L RLT      +  E  +L  +I    ++++   
Sbjct: 410 -----------FDFTQPQAEAIVTLQLYRLTNTDVTQLEEEFAALTEKINHLTEVMNEEM 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            L  +I+ E+ ++  +  + RR++I   VE L+ ++    I  ED+ V VS  GY KR  
Sbjct: 459 ALKAVIRDEITAITQKYQSARRSQIEAEVEDLV-IDKAVTIAEEDVQVLVSRNGYYKRAS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y+A  +         + D+D       ++T   +  F++ G V    V  LP    +
Sbjct: 518 IRSYKASDKDNG------LADDDLPVFEGQLNTTQHLFMFTNKGSVIYRPVHELPDSRWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QIN 669
             G+     LS     E +  ++P    E           T  G +++  LSD +     
Sbjct: 572 DTGEHFSQELSNWRTEEYVIKVVPINTLEQGGA---FTIVTNDGFIKQTTLSDMLPKAYK 628

Query: 670 RSGKIAMKLDSRDEIL----SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +   +A+KL + D  +      ET  Q+ D+LL ++ G  +RF + +I     R + GV+
Sbjct: 629 KKTSMAIKLKTDDSYVVNADYFETVGQQ-DVLLLSQHGVGLRFAVKSIPEIGAR-TAGVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L + +  I  A+ +  +A   +R+  M    A + +      EIT  K  +      
Sbjct: 687 AMDL-RNEDTIKAAVFVTNEA---QRVAIMADNGAFKYM---PVSEITRSKRANKGLLIF 739

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSY--------DFRISNRSGKGIRATDVSKINE 837
           ++++     +    IL + +      T+ +        D++ S R G G    DV K  E
Sbjct: 740 TQKKTVAYHVATATILNIEDTALEILTTRWQKQELQLSDYKPSQRVGNGQYVVDVKKYGE 799



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q +L +S+ G G R +            G++A D+   + I A  AVF  N+  ++ ++
Sbjct: 655 QQDVLLLSQHGVGLRFAVKSIPEIGARTAGVKAMDLRNEDTIKA--AVFVTNEAQRVAIM 712

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +D G    +PV+EI  + RA KG++IF+  K
Sbjct: 713 ADNGAFKYMPVSEITRSKRANKGLLIFTQKK 743


>gi|312829751|emb|CBX34593.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 800

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|329946868|ref|ZP_08294280.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526679|gb|EGF53692.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 850

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 277/773 (35%), Positives = 404/773 (52%), Gaps = 88/773 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +VK +
Sbjct: 17  IVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSS 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 77  RVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 136 AASALTLTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY  GRG  + R  +H
Sbjct: 196 VEVVAAARHLLTHPEASLEELMAFVPGPDLPAGGMIVGLDGIREAYRVGRGKFLTRATAH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           +E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +D R G R+VI +
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKIIARIKEAVGSKKLQGITDVADLTDRRHGTRLVISV 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLY++T L+  F +N V+L   +P    L  +L+ FV  R  VV RRT+
Sbjct: 316 KNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLEVFVRHRLTVVTRRTR 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ               
Sbjct: 376 FRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARSRLMQ--------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q   ILEL+L RLT     ++  E + L  EI+    IL+  
Sbjct: 421 -----------VFDLTEPQASYILELQLRRLTKFSVIELEKERDELAREIEALEAILADE 469

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE----------GLLDMEDE-------------- 530
             L  ++ +EL +V ++  T RRT ++E           +   ED+              
Sbjct: 470 VLLRRVVSRELAAVAEQFGTSRRTVLLETSGERVTSSASVAPPEDDASGATGGSTVKQAK 529

Query: 531 ---------------DCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
                             V +D   V +S  G V R P       R GG+       R  
Sbjct: 530 ASAEPMTLMPGSSPVPLTVPDDPCRVMLSATGLVARTP-GAEPVARTGGR-------RPH 581

Query: 575 DFVTDLFIVSTHTSVLFFSSLG------FVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           D +T     +    +   +  G       V   +V R       A    +  ++     E
Sbjct: 582 DALTSQVATTARGRIGAVTDTGRLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEE 641

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           ++  ++P      S +N  +V AT  G ++R K  D  +   S ++ + L   D ++   
Sbjct: 642 KVVGLVPV----GSADNPPIVLATADGVIKRVKPGDEPRNAESWEV-ISLSDDDRVVFAG 696

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           T    + + L T   Q +RF  + +R   GR + G+ GISL +G +VI+ A V
Sbjct: 697 TARDTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLREGARVIAGAAV 748


>gi|15924345|ref|NP_371879.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979674|ref|YP_001441933.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317050|ref|ZP_04840263.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006143|ref|ZP_05144744.2| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258413399|ref|ZP_05681675.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|258447474|ref|ZP_05695618.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|258449315|ref|ZP_05697418.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|258454695|ref|ZP_05702659.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|269202978|ref|YP_003282247.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282928914|ref|ZP_06336503.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|20178000|sp|Q931S2|PARC_STAAM RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14247126|dbj|BAB57517.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721809|dbj|BAF78226.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839963|gb|EEV64431.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|257853665|gb|EEV76624.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|257857303|gb|EEV80201.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|257863078|gb|EEV85842.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|262075268|gb|ACY11241.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589423|gb|EFB94513.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|285817033|gb|ADC37520.1| Topoisomerase IV subunit A [Staphylococcus aureus 04-02981]
          Length = 800

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|21282971|ref|NP_646059.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|38604913|sp|Q8NWU8|PARC_STAAW RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|21204410|dbj|BAB95107.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
          Length = 800

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKCDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|87160035|ref|YP_493948.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|294848359|ref|ZP_06789106.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|87126009|gb|ABD20523.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|294825159|gb|EFG41581.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
          Length = 800

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|304381068|ref|ZP_07363722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340377|gb|EFM06317.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314033|gb|AEB88446.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 800

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|561880|gb|AAA53116.1| gyrase-like protein alpha subunit [Staphylococcus aureus]
          Length = 800

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 257/735 (34%), Positives = 417/735 (56%), Gaps = 60/735 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ- 612
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+   + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPVHKLRD 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLS 663
            R K L        G+ ++ I+P  EDE   N         + + VFAT++G ++++ + 
Sbjct: 569 IRWKEL--------GQHVSQIVPIEEDEVVINVYNEKDFNTDAFYVFATQNGMIKKSTVP 620

Query: 664 DFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  +
Sbjct: 621 LF-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRA 678

Query: 722 VGVRGISLAKGDQVI 736
            GV+ I+L   D V+
Sbjct: 679 AGVKSINLKVEDFVV 693



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 114/248 (45%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +R    +     V  I   + D+V+   I ++ + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLRDIRWKELGQHVSQIVPIEEDEVV---INVYNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKIN-EIGALVAVFP-VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN ++   V +   V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKVEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|283470570|emb|CAQ49781.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 800

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVIINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+VI   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVI---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
          Length = 782

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/717 (36%), Positives = 405/717 (56%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     ++K A+ISG+ MG +HPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISGDTMGDFHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +LD L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAEAMLDGLNE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFR NYDG   EP VL A +PN+L NG  GIAVGMATNIP HN+ E++D C+ +I  
Sbjct: 151 NAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELIDACLHLIKT 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG +I+  +  I  AY+TGRGS  +R    +E     + QIV
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCKHEVEDLGRGQWQIV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K++  +AD+RDES     R+V+E K +    +V++N 
Sbjct: 271 VTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDES-ADDIRIVLEPKSKNVDPEVLMNM 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           ++R + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR+++ + K   R  
Sbjct: 330 MFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMEKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   L++  W+    KD    + ++ Y   + G
Sbjct: 390 VLEGFIIAFLNLDRVIDIIRYDEDPKAA---LIREDWS----KDHPRALTEADYITPARG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+EVQ  AIL +RL  L  L   ++  E ++L  E    +++L+S       I ++L
Sbjct: 443 VGELTEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLASEELQWSRISEQL 502

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +         RRT   E     D+  E  I RE + V  S +G+++ +   +  +
Sbjct: 503 KETKKQFGKDYEGGARRTLFAEAGEAEDVPLEAMIDREPITVVCSQMGWIRAMTGHIDLS 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+ L
Sbjct: 563 RE--------LKFKDGDAPRFIFHAETTDKLLVFGSNGRFYTLSAANLPGG--RGMGEPL 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +  ++  PE         ++ A+  GN       + +   RSGK  + 
Sbjct: 613 RLMVDLPNEAEIVDLLIHNPEGR-------LLVASDAGNGFICAEKEIVAQTRSGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   DE   V    + + + + ++ G+ + F +  +        V ++  ++A+G Q
Sbjct: 666 VKD-DERAKVCIPVEGDHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQ 721


>gi|33860565|ref|NP_892126.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633507|emb|CAE18464.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 813

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/556 (41%), Positives = 354/556 (63%), Gaps = 40/556 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + KCA
Sbjct: 6   FTSISLQEEMQRSYLEYAMSVIIGRALPDARDGLKPVQRRILFAMHELGLTPDRPFRKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+AL R+ QD+S +   ++G GNFGSVD DPPAA RYTE RL
Sbjct: 66  RVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTETRL 125

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH   L ++G +TV +  N+DGS QEP +L A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 126 APIAHECFLQEIGSETVSYSNNFDGSQQEPDILPAQLPFLLLNGSSGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+I++ +I    L +II GPDFPTG  ++  + +   Y  GRGS+ +RGV 
Sbjct: 186 LGEIVDGLIALINDKEISDLRLSKIILGPDFPTGGELICNSAMNEVYLQGRGSVTVRGVI 245

Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E     K    +  ++++E+PYQ++KA  +EK+AELV   +I  I+D+RDESDR G R
Sbjct: 246 KNEEINLGKGRHKKNALIISELPYQISKAGWIEKLAELVNLGKIDGISDIRDESDRDGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELK+ ++++++++ L++ T+LQS F    +AL   KP + TL   L  F+ FREE +
Sbjct: 306 VVIELKKDSNSEIVVSNLFKKTALQSNFGAIFLALVDGKPIQLTLRKYLNYFLEFREETI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RTKY L  A ++  +L G +IA  N+ +++              E++Q S NA++ K 
Sbjct: 366 RKRTKYFLRIASEKFEILEGFSIATKNIKDII--------------EVIQNSENATEAKS 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           ++ +             + LSE Q  A+L + L +LT L R  I  ++  L  + K   +
Sbjct: 412 ILIV------------KLSLSEKQADAVLSMPLKKLTTLERKQIEIDMKELLEKKKYLNN 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMV-----VT 541
           +L++R  LL  + +EL S+K + +  R+T+I++ +   ++ D I   + ED++     ++
Sbjct: 460 LLNNRRLLLDTLIEELKSLKKKFNVKRKTKILKDINQEKEIDTINNQILEDLINKETKIS 519

Query: 542 VSHLGYVKRVPLSVYR 557
           V +  Y K++  + Y+
Sbjct: 520 VDNRFYFKKIIYNNYK 535


>gi|282919066|ref|ZP_06326801.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316876|gb|EFB47250.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
          Length = 800

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/734 (35%), Positives = 417/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIV-REDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +    E      D++ +V  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|114152112|sp|P0C1U9|PARC_STAAU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777318|dbj|BAA11085.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
          Length = 800

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
          Length = 823

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/512 (44%), Positives = 316/512 (61%), Gaps = 28/512 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+++ IT + ++DEM+ S+L YA++VI  RA+PD RDGLKPV RRILF M QMG+  +K 
Sbjct: 12  EKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKG 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D D PAA RY
Sbjct: 72  HVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARY 130

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+  AA  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GIAVGMATN+
Sbjct: 131 TEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGIAVGMATNV 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E + G + ++DNP   +  LM  I GPD P G VI+G  GIK AY TGRG+   
Sbjct: 191 APHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKEAYETGRGAFKT 250

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    IE+ +  +  I+VT++PY V    ++EKI E     R+  I+ +++ +DR  G R
Sbjct: 251 RAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNLTDRIHGLR 310

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F+  R +V 
Sbjct: 311 LVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVFLDHRLDVT 370

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L K  DR H++ GL IA+ ++D+V+ IIR S + E AR  LM           
Sbjct: 371 TRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMT---------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q   ILELRL RLT   R ++  E + L  +I    +
Sbjct: 421 ----------------AFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLRE 464

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           IL     L  ++K+EL  V D L TPRRT ++
Sbjct: 465 ILEDPELLRALVKKELREVSDRLGTPRRTLLL 496


>gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 823

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/512 (44%), Positives = 316/512 (61%), Gaps = 28/512 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+++ IT + ++DEM+ S+L YA++VI  RA+PD RDGLKPV RRILF M QMG+  +K 
Sbjct: 12  EKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKG 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D D PAA RY
Sbjct: 72  HVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARY 130

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+  AA  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GIAVGMATN+
Sbjct: 131 TEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGIAVGMATNV 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E + G + ++DNP   +  LM  I GPD P G VI+G  GIK AY TGRG+   
Sbjct: 191 APHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKEAYETGRGAFKT 250

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    IE+ +  +  I+VT++PY V    ++EKI E     R+  I+ +++ +DR  G R
Sbjct: 251 RAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNLTDRIHGLR 310

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F+  R +V 
Sbjct: 311 LVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVFLDHRLDVT 370

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L K  DR H++ GL IA+ ++D+V+ IIR S + E AR  LM           
Sbjct: 371 TRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMT---------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q   ILELRL RLT   R ++  E + L  +I    +
Sbjct: 421 ----------------AFDLSEAQANYILELRLRRLTKFSRIELEAERDELLAKIASLRE 464

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           IL     L  ++K+EL  V D L TPRRT ++
Sbjct: 465 ILEDPELLRALVKKELREVSDRLGTPRRTLLL 496


>gi|148267844|ref|YP_001246787.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393906|ref|YP_001316581.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257795589|ref|ZP_05644568.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|258420495|ref|ZP_05683437.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|295406299|ref|ZP_06816106.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244528|ref|ZP_06928411.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|147740913|gb|ABQ49211.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946358|gb|ABR52294.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257789561|gb|EEV27901.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|257843443|gb|EEV67850.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|294968887|gb|EFG44909.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178558|gb|EFH37804.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|315131158|gb|EFT87142.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727393|gb|EGG63849.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 800

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|21518734|gb|AAM60779.1| topoisomerase IV subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 800

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 258/734 (35%), Positives = 422/734 (57%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  AV+ LD V  +IR S N   A+             ++LI++++
Sbjct: 365 ELDNAEKRMHIVEGLIKAVSILDRVFELIRSSKNKRDAK-------------ENLIEVVE 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  A + L+L RLT      +  E   L   IK+  DIL +  
Sbjct: 412 -------------FTEEQAEATVMLQLYRLTNTDIVALEGEHKELEALIKQLRDILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR--EDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R + I   + +++ +  ++   E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDTEVMEPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 114/256 (44%), Gaps = 23/256 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAKD--ERVVS 893
           + +    K+   R+V+
Sbjct: 731 ITLLKELKNNPHRIVA 746


>gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
 gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 782

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/717 (36%), Positives = 409/717 (57%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     ++K A+ISG+ MG +HPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLTSTGGFLKSAKISGDTMGDFHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAEAMLEGLSE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFR NYDG   EP VL A +PN+L NG  GIAVGMATNIP HN+GE++D C+ +I  
Sbjct: 151 NAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIGELIDACLHLIKT 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG +I+  +  I  AY TGRGS  +R    +E     + QIV
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYNTGRGSFRLRCTHEVEDLGRGQWQIV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           +TEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES  +  R+V+E K +    +V++N 
Sbjct: 271 ITEIPYQVQKSKLIEKIAELIQTKKIPILADVRDES-AEDIRIVLEPKSKNVDPEVLMNM 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           ++R + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR+++ ++K   R  
Sbjct: 330 MFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMDKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   LM+ +W+    +       ++ Y   + G
Sbjct: 390 VLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMRENWSLDHPRAYT----EADYVSPAIG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+EVQ  AIL +RL  L  L   ++  E ++L  E    +++L+S       I ++L
Sbjct: 443 AGELTEVQAEAILNMRLRSLRRLEEIELVRERDALREERAGLVELLASEDLQWSRIAEQL 502

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +        PRRTR  E   + ++  E  I RE + V  S +G+++ +   +   
Sbjct: 503 KDTKKQFGKTYEGGPRRTRFAEAGEVEEVPLEAMIDREPITVVCSQMGWIRAMTGHI--- 559

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                 GR  +  +D D    +F   T   +L F+S G  Y      LP G  +  G+ L
Sbjct: 560 ----DLGRE-LKFKDGDGPRFIFHAETTDRLLVFASNGRFYTISASNLPGG--RGMGEPL 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +  ++  PE         ++ A+  GN       D +   RSGK  + 
Sbjct: 613 RLMVDLPNEVEIVDILIHNPEGR-------LLVASDAGNGFICAEKDIVAQTRSGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   D        T ++ + + ++ G+ + F +  +        V ++  ++A+G Q
Sbjct: 666 VKDDDRAKICIRVTGDH-VAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQ 721


>gi|284024356|ref|ZP_06378754.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           132]
          Length = 800

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|257425421|ref|ZP_05601846.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428081|ref|ZP_05604479.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257433472|ref|ZP_05609830.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436313|ref|ZP_05612360.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903935|ref|ZP_06311823.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905700|ref|ZP_06313555.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908668|ref|ZP_06316489.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910937|ref|ZP_06318740.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914144|ref|ZP_06321931.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924249|ref|ZP_06331923.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958119|ref|ZP_06375570.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293526724|ref|ZP_06671409.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591170|ref|ZP_06949808.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271878|gb|EEV04016.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274922|gb|EEV06409.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257281565|gb|EEV11702.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284595|gb|EEV14715.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313636|gb|EFB44029.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322212|gb|EFB52536.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325542|gb|EFB55851.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327486|gb|EFB57778.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330992|gb|EFB60506.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595553|gb|EFC00517.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790268|gb|EFC29085.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920796|gb|EFD97859.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297576056|gb|EFH94772.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194272|gb|EFU24665.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 800

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|258424794|ref|ZP_05687668.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
 gi|257844958|gb|EEV68998.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
          Length = 800

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RR+L+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRMLYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVYNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKVEDFVV 693



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 113/248 (45%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I ++ + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVYNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKIN-EIGALVAVFP-VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN ++   V +   V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKVEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|293501172|ref|ZP_06667023.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291096177|gb|EFE26438.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 800

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|82750948|ref|YP_416689.1| DNA topoisomerase IV subunit A [Staphylococcus aureus RF122]
 gi|82656479|emb|CAI80901.1| topoisomerase IV subunit A [Staphylococcus aureus RF122]
          Length = 800

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A    H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D ++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDNLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISEER--CQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E       ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDNLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|312438245|gb|ADQ77316.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 800

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 46.6 bits (109), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
 gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
          Length = 768

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 262/658 (39%), Positives = 380/658 (57%), Gaps = 39/658 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +LD L +
Sbjct: 87  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEAMLDGLNE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFR NYDG+  EPVVL A++PN+L NG  GIAVGMATNIP HN+ E+ + C+ +I  
Sbjct: 147 NAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCEACIHLIKT 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L++ + GPDFPTG VI+     I  AY TG+G   +R    +E     + QIV
Sbjct: 207 PDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFRLRCRWEVEDLGRGQWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES     R++IE + R   ADV++  
Sbjct: 267 VTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDES-ADDVRMIIEPRSRSVDADVLMGM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           L+RY  L+  FS+NM V ++G  P+  ++  +L+AF+  R+EV+ RR+++ L K   R  
Sbjct: 326 LFRYCDLELRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEVLQRRSQHRLEKIDHRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY--TIGS 443
           VL G  IA  NLD V+ IIR+  +P+ A   LM   W     KD    ++++ Y   + +
Sbjct: 386 VLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMAEDWG----KDHPRALNEADYVPPVPT 438

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           D  + L+EVQ  AIL +RL  L  L   ++  E  +L  E     D+L S       I +
Sbjct: 439 D-DVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMAERAALEDLLESPELQWASITE 497

Query: 504 ELLSVKDELDT-----PRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L + K +         RRT   E  +  D+  E  I RE + V  S +G+V+ +   + 
Sbjct: 498 QLRATKKQFGKDWDGGARRTTFSEATVIEDVPIEAMIDREPITVVCSEMGWVRAMTGHID 557

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+
Sbjct: 558 LTRE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGG--RGMGE 607

Query: 617 ALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            L  ++ L N+ E IT +   P       N  ++ A+  G+      +D +   R+GK
Sbjct: 608 PLRLMIDLPNEAEIITILTHAP-------NRKLLVASSAGDGFVVPEADVVAQTRTGK 658


>gi|257430712|ref|ZP_05607094.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278840|gb|EEV09459.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 800

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 416/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFILNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12]
 gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 777

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/610 (40%), Positives = 363/610 (59%), Gaps = 26/610 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE     TS  +   +   YL YA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +    
Sbjct: 16  EEPGAAQTSEPLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATG 75

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA R
Sbjct: 76  GFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL  AA  L++ L ++ VDFR NYDG+  EP VL A +PN+L NG  GIAVGMATN
Sbjct: 136 YTEARLTAAAEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           IP HNL E++DGC+ +I  P+   + L+E+I GPDFPTG VI+  +  I  AYATGRG+ 
Sbjct: 196 IPPHNLHELIDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAF 255

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R     E     + QIV+TEIPYQV K+ ++EKIA+L++ K++  +AD+RDES     
Sbjct: 256 RLRARWAREDLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDES-ADDV 314

Query: 309 RVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFRE 366
           R+++E + +    +V++  L+R + L++ FS+NM V ++G  P+  +L  +L+AF+  R 
Sbjct: 315 RIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRR 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RR+++ L K   R  VL G  +A  NLD V+ IIR+  +P+ A   LM+  W+   
Sbjct: 375 DVLGRRSRHRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAA---LMREDWSLKH 431

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           ++      D++ Y   + G   L+EVQ  AIL +RL  L  L   ++ +E ++L  E  E
Sbjct: 432 VR----ATDEADYKTPAPGEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAE 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT-----PRRT--RIVEGLLDMEDEDCIVREDMV 539
             D+L+  +     I  EL  V+ +         RRT   +   + ++  ED I RE + 
Sbjct: 488 LEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREPIT 547

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  S +G+++ +   V   Q         +  +D D    +F   T   +L F + G  Y
Sbjct: 548 VVCSKMGWIRAMKGHVALDQ--------ALKFKDGDEGRFIFHAETTDKLLAFGANGRFY 599

Query: 600 KEKVWRLPIG 609
                 LP G
Sbjct: 600 TLSCAALPGG 609


>gi|229820420|ref|YP_002881946.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566333|gb|ACQ80184.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 819

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 275/751 (36%), Positives = 395/751 (52%), Gaps = 76/751 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+    ++ I  + + +EMQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+ 
Sbjct: 5   SAPPPADERIVDIDVAEEMQDSFLEYAYSVIYARALPDARDGLKPVQRRILYQMADMGLR 64

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VK AR+ GEVMGK HPHG+ AIYDAL RMAQ +SLRL L++G GNFGS+D D PA
Sbjct: 65  PDRGHVKSARVVGEVMGKLHPHGDTAIYDALVRMAQAFSLRLPLVDGHGNFGSLD-DGPA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  +   L +D VDF PNYD    +P VL +  PN+LVNG  GIAVGM
Sbjct: 124 APRYTEARLAPAALVMTGGLDEDVVDFVPNYDNQLTQPEVLPSAMPNLLVNGASGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+P HNL EV+     +I +PD DL+ALM  + GPD P G  I+G  G+++AY +GRG
Sbjct: 184 ATNMPPHNLVEVIAAARHLIAHPDADLEALMRFVPGPDLPGGGKIVGLDGVRDAYVSGRG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S   R  + +E  +  R  IVVTE+PY V    + EKIAE VR K++  +A ++D +DRQ
Sbjct: 244 SFRTRATARVENLTPRRRGIVVTELPYLVGPERVTEKIAEAVRSKKVQGVAGVQDLTDRQ 303

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G + + +L QLYR T L+  F +N VAL G +P    L  +L  +V  R
Sbjct: 304 HGLRLVIEVKSGFNPEAVLEQLYRATPLEESFGINNVALVGGQPRTMGLRELLTVYVEHR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V  RR++Y L +  +R H++ GL IA+A++DEV+ +IR S +   AR  L+       
Sbjct: 364 LVVTRRRSEYRLRRRSERLHLVEGLLIAIADIDEVIAVIRSSDDAAQARERLV------- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS  Q   ILEL+L RLT   R ++ +E + L  EI 
Sbjct: 417 -------------------AVFDLSTPQADYILELQLRRLTKFSRIELTSERDELQREIA 457

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------------------L 525
           E  ++L   +RL  ++  EL  V ++  TPRRT ++E                      L
Sbjct: 458 ELTELLGDPARLRALVSDELAQVANQHGTPRRTVLLESAGAPAAAAAAAPTSGRAGAVPL 517

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           ++ D  C V       ++  G   R      R  RR             D +      + 
Sbjct: 518 EIPDTPCWVLLSATGLLARTGDDAR----PVREGRRAA----------HDAILGSVPATA 563

Query: 586 HTSVLFFSSLGFVYKEKVWRLPI-----GSPQARGKALIN-ILSLNQGERITTIMPFPED 639
              V   +S G + +  V   P      G P   G   +  +++L  GER  T+     D
Sbjct: 564 RGEVGLVTSRGRIVRVNVLDAPALPPTDGPPSLSGGVGVGELVALEPGERPLTLAALGPD 623

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +     +   T  G V+R       + +    IA+K    D+++   T   +++++  
Sbjct: 624 APA-----LALGTASGVVKRVSPEAPAKGDAWEVIALK--DGDQVVGAATAADDDEVVFV 676

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           T   Q +RF  +++R   GR + G+ G+ LA
Sbjct: 677 TSDAQLLRFRAASVRP-QGRAAAGMAGVRLA 706


>gi|315604333|ref|ZP_07879399.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314039|gb|EFU62090.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 822

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 277/775 (35%), Positives = 408/775 (52%), Gaps = 93/775 (12%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H++   E +E  I+ + ++ EM+ S+L YA++VI  RA+PD RDGLKPV RRILF M Q
Sbjct: 5   DHVVDIPEADEN-ISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQ 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D 
Sbjct: 64  MGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+  +A  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GI
Sbjct: 123 DGPAAARYTEARMAPSAVDLVTGLDEDTVDFVPNYDNQFMQPEVLPAAFPQLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNI  HNL E + G + ++D+P   +  LM  I GPD P G VI+G  GIK+AY 
Sbjct: 183 AVGMATNIAPHNLCEAIAGVIHLLDHPSASVADLMRYIPGPDLPEGGVIVGLDGIKDAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+   R    IE+ +  +  IVVT++PY V    ++EKI E     R+  I+ +++ 
Sbjct: 243 TGRGAFKTRAKVQIERVTARKMGIVVTQLPYMVGPEKVIEKIKENASAGRLKGISSVQNL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F
Sbjct: 303 TDRVHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V  RR+++ L K  DR H++ GL +A+ ++D+V+ IIR S + E AR  LM   
Sbjct: 363 LDHRLDVTTRRSRFRLGKCEDRLHLVEGLLVAILDIDDVIAIIRSSDDAEVARERLMT-- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q   ILELRL RLT   R ++ +E + L 
Sbjct: 421 ------------------------AFDLSEAQATYILELRLRRLTKFSRIELESERDELV 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-------------------- 521
            +I +  +IL     L  ++K+EL  V D L TPRRT ++                    
Sbjct: 457 AKIAQLREILDDPELLRALVKKELREVSDRLGTPRRTLLLASTGSPVGAGADDAALAALP 516

Query: 522 ------EGL-LDMEDEDCIVREDMVVTVSHLGYVKRV----PLSV-YRAQRRGGKGRSGV 569
                 +GL L + D+ C      VV +S  G + RV    PL    RA   G + +   
Sbjct: 517 SVSRSGKGLDLQIPDDPC------VVVLSSSGALARVEGGDPLEPGPRAASDGWRAQ--- 567

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS---LNQ 626
                         S  + V   +  G  ++  V  LP       G +L   +    L  
Sbjct: 568 -----------LASSVRSQVAVVTQDGIAHRIDVVDLPALPRFDTGLSLAAAMPSELLLH 616

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            + +   +  P+         V   T  G V+R +  D +       IA  L+  D ++ 
Sbjct: 617 TDSVPVGLLDPDGTD-----VVAMGTARGTVKRLR-PDVLAREEWEVIA--LEDGDRLVG 668

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            + C+ + D++  +   Q +R P + +R   GR + G+ G+ L  G + +   +V
Sbjct: 669 FDRCSDDADLVFISSDAQLLRTPAAKVRP-QGRTAGGMAGMKLNAGAEALGFWVV 722


>gi|221141852|ref|ZP_03566345.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751186|gb|ADL65363.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 800

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A    H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKKNDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 111/252 (44%), Gaps = 29/252 (11%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKND----SSVEGN---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
             T  +  T+  N     + V+ N   IS  R +    K+Q I  ++ KG      S  +
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKKNDDLISVMRFE----KDQLITVITNKGM-----SLTY 666

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASR 875
             S  S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A R
Sbjct: 667 NTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKR 726

Query: 876 ATKGVVIFSTAK 887
           A +G+ +    K
Sbjct: 727 AQRGITLLKELK 738


>gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 782

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/716 (37%), Positives = 403/716 (56%), Gaps = 35/716 (4%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  + K A+ISG+VMG YHPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKISGDVMGNYHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LL+ L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVAEALLEGLDE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG+ +EPVVL A +PN+L NG  GIAVGMATNIP HN+ E+ D C+ +I  
Sbjct: 151 DAVDFRDNYDGTLREPVVLPATFPNLLANGASGIAVGMATNIPPHNIAELCDACLHLIKT 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG VI+     I  AY TGRGS  +R    IE     + QIV
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGVIVEPPESIAQAYRTGRGSFRLRCKYEIEDLGRGQWQIV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EK+AEL++ K+I  + D+RDES     R+++E + +    +V++N 
Sbjct: 271 VTEIPYQVQKSKLIEKLAELIQTKKIPILGDVRDES-ADDIRLILEPRSKNVDPEVLMNM 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R+EV++RR+++ + K   R  
Sbjct: 330 LYRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRHRMAKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  +A  NLD V+ IIR+  +P+ A   LM+ +W      D +    ++ Y     G
Sbjct: 390 VLEGFIVAFLNLDRVIDIIRYDDDPKAA---LMRENWGI----DHVRATSEADYVSPKPG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E ++L  E     D+L+        I ++L
Sbjct: 443 EGELSEVQVDAILNMRLRSLRRLEEMELVRERDALMEERAGLEDLLADEGLQWASIAEQL 502

Query: 506 LSVKDELDT-----PRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +         RRTR  E   + ++  E  I RE + V  S +G+++ +   +   
Sbjct: 503 KETKKKFGKDYEGGARRTRFAEAGAVEEVPLEAMIDREPITVVCSQMGWIRAMTGHIDLN 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F+S G VY      LP G  +  G+ L
Sbjct: 563 RE--------LKFKDGDGPRFIFHAETTDRLLIFASNGRVYTVSAANLPGG--RGMGEPL 612

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             ++ L    +I  I+             ++ A+  GN       + +   R+GK  + +
Sbjct: 613 RLMVDLPNEAQIVDILIHKPGRK------LLVASDAGNGFIVPEDEVLAQTRNGKQVLNV 666

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
              DE   +      + + + ++ G+ + FP+S +        V ++  ++A+G Q
Sbjct: 667 KD-DERAVICKPVAGDHVAVVSQNGKFLVFPVSELPEMTRGKGVRLQKYNMARGRQ 721


>gi|326332643|ref|ZP_08198911.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949644|gb|EGD41716.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 643

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/668 (38%), Positives = 362/668 (54%), Gaps = 71/668 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    I +EM++S+L Y+ +VI  RA+PD RDGLKPV RRILF M  MGV  ++ +V
Sbjct: 15  EEHILDTDIGEEMRSSFLEYSYSVIYSRALPDARDGLKPVQRRILFTMNDMGVRPDRGHV 74

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE-RYT 131
           KCARI GEVMGK HPHG+ AIYDAL RMAQ W++RL +I+G GNFGS  GD PAA  RYT
Sbjct: 75  KCARIVGEVMGKLHPHGDGAIYDALVRMAQPWAMRLPMIDGHGNFGSPGGDDPAAAMRYT 134

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+  AA  + DD+ +DTVDFRPNYD    EP VL A  PN+LVNG  GIAVGMATN+ 
Sbjct: 135 EARMGPAALAMTDDIKEDTVDFRPNYDSREMEPSVLPAAIPNLLVNGATGIAVGMATNMA 194

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+     +I +P  +LD LM+ I GPD PTG  I+G  GI++AY TGRGS  IR
Sbjct: 195 PHNLVEVIAAARHLIKHPGAELDTLMKFIPGPDLPTGGTIVGLDGIRDAYETGRGSFKIR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRV 310
             + IE T G R+ IV+TE+P+ +    ++E++  LV+ K+I  IADL+D +DRQ G R+
Sbjct: 255 ATTRIE-TFGRRKGIVITELPFNIGTEKIIERVKTLVQSKKIQGIADLKDLTDRQHGTRL 313

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G   + +L QLY+ T L+  F +N VAL   +P    L  +L+ F+  R +VV 
Sbjct: 314 VIEVKNGFVPEAVLEQLYKMTPLEDSFGINNVALVDGQPRTLGLKELLEVFLGHRYDVVR 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++  +KA DR H++ GL IA+ ++DEV+++IR S N   A+  LM            
Sbjct: 374 RRSQFRRDKAADRLHLVDGLLIAILDIDEVIQLIRASENAGEAKDRLMS----------- 422

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q   IL++ L RLT   + ++  E + L   I+    I
Sbjct: 423 ---------------VFDLSQPQAEYILDMALRRLTKFSKIELEKERDELQATIEYLDSI 467

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------LDMEDEDCIVREDMVVT 541
           L     L  ++  EL  V     TPRRT ++            L++ D+ C         
Sbjct: 468 LGDDEMLRKVVSDELGEVAKTFGTPRRTVLLASAGTPALEAMSLEVADDPCF------AM 521

Query: 542 VSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +S  G + R     P +            +G    + D +  +   +    +   +S G 
Sbjct: 522 LSSTGLLARSSDAEPFT------------TGSARANHDVIVSVVPATARGQIGVLTSRGR 569

Query: 598 VYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP   P       + G  L  +LSL   ER   +     D        +   
Sbjct: 570 LVRLGVLDLPAMPPTHGDPNLSGGLPLSALLSLESDERALALTTLATDGPG-----IALG 624

Query: 652 TKHGNVRR 659
           T+ G V+R
Sbjct: 625 TRLGVVKR 632


>gi|83953740|ref|ZP_00962461.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841685|gb|EAP80854.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 358

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/325 (61%), Positives = 253/325 (77%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+   K Y K A+ 
Sbjct: 25  SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD  AA RYTE RL K
Sbjct: 85  VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A F+  DL K+TVDF  NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D C A+I+NPD+  + L+E I GPDFPTG ++LGR+G + AY  GRGS+++R  + +E
Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLGRSGARKAYLEGRGSVIMRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EI YQVNK+ M+EKIAE VREK+I  IA ++DESDR G RVVIELKR 
Sbjct: 265 EIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMV 342
           A+A+V++NQLYR+T +Q+ F  NM+
Sbjct: 325 ATAEVVMNQLYRFTPMQTYFGCNML 349


>gi|291523172|emb|CBK81465.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus catus GD/7]
          Length = 745

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 261/740 (35%), Positives = 404/740 (54%), Gaps = 40/740 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E II +D  E            MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M
Sbjct: 1   MQEQIIRTDYAEV-----------MQKSYVDYAMSVIISRALPDIRDGLKPVQRRTLYDM 49

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ + ++K Y KCARI G+ MGKYHPHG+++IYDAL  MAQ++   + L++G GNFGS+
Sbjct: 50  YELAIRYDKPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMPLVDGHGNFGSI 109

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RLQK      L DL KD VDF PN+D + +EP VL  R PN LVNG 
Sbjct: 110 EGDGAAAMRYTEARLQKVTQEVFLADLDKDVVDFMPNFDETEKEPTVLPVRLPNFLVNGS 169

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM T+ P HNLGEV+D   A + N  +    LM+ I+GPDFPTG ++  +  + N
Sbjct: 170 DGIAVGMVTSTPPHNLGEVIDAVKAYMKNDKLTTADLMQYIQGPDFPTGGIVTNKDELLN 229

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDI 296
            Y TG G I +RG   +E+  G + ++V+TEIPY +   N    L  +  LV  K+  DI
Sbjct: 230 IYETGSGKIKLRGRVEVEQDKGGKLRLVITEIPYTMIGANIGKFLNDVYALVESKKTTDI 289

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D+ ++S ++G R+V+ELK+    D +L  LY+ T L+  FSVNM+A+   +PE   L  
Sbjct: 290 IDISNQSSKEGIRIVLELKKQTDVDNLLALLYKKTRLEDTFSVNMLAIADGRPETLGLKS 349

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           I++ F+ F+ ++  R+ + LL K  ++  +  GL  A   +D ++ I+R S N + A+  
Sbjct: 350 IIEYFLDFQYDLTTRKYQKLLAKELEKQEIQEGLMRATDIIDLIIEILRGSKNIKQAKAC 409

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM  +      K        S  +  +   +  +E Q  AILE+RL +L GL  D +  +
Sbjct: 410 LMTGTTEGIRFK--------SKASERAASALDFTERQATAILEMRLYKLIGLEMDALLKD 461

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
            ++    I    DIL +   +  +I  +L  +K    TPR+T I      + +E      
Sbjct: 462 HDATLKNIASYKDILENHKSMSRVISHDLDMIKKTYATPRKTSIENVRAAVYEEKKAEAM 521

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++V  +   GY K +  + +   +          + +  +V D   ++T  + + F+  G
Sbjct: 522 EVVALIDRFGYAKTIDKATFERNKEAA-------LSENKYVID--CMNTDKACI-FTDTG 571

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHG 655
            ++  K+  +P G  + +   L N+ + +  GE I  I       +S ++  ++F TK G
Sbjct: 572 RLHLIKITDMPFGRFRDKSIPLDNLGNYDSSGENIIHICSL----ASIHDAMLLFVTKTG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++  K S+F  +++    A KL   D I+++      N ++L T+ G  +RFP+  I  
Sbjct: 628 MLKLVKGSEF-DVSKRTVAATKLADGDNIITICIADNFNQLVLQTENGYFIRFPMMNIPE 686

Query: 716 FAGRNSVGVRGISLAKGDQV 735
              + ++GVRGISL  GD V
Sbjct: 687 MK-KTAIGVRGISLGSGDSV 705


>gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 805

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 272/745 (36%), Positives = 399/745 (53%), Gaps = 66/745 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++DEM+ S+L YA +VI  RA+PD RDG KPV RRILF M QMG+   K +VK
Sbjct: 11  ENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQMSQMGLRPEKGHVK 70

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
              + GEVMGK HPHG+AAIYDAL R+AQ ++LRL L++G GNFGS+D D PAA RYTE 
Sbjct: 71  SQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYTEA 129

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L+ +L +D VDF PNYD    +P VL A +P +LVNG  GIAVGMATNI  H
Sbjct: 130 RLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAMGIAVGMATNIAPH 189

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV     +IDNP+     LM  + GPD P G +I+G  GI+ AY TGRG+   R  
Sbjct: 190 NLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIVGLDGIREAYETGRGAFKTRAK 249

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             +E+ +  ++ +V+TE+PY V    ++EKI E V  K++  I+++ + +DR  G R+V+
Sbjct: 250 ITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVSNLTDRHHGVRLVV 309

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G +   +++QL+++T L+  FS+N VAL   +P    L  +L+ +V  R  V+ RR
Sbjct: 310 EVKNGFNPQAVMSQLFKHTPLEDNFSINAVALVDGRPMTLGLKQMLEVYVKHRLSVIERR 369

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L KA DR H++ GL +A+ ++D+V+ IIR S + ++AR  LM              
Sbjct: 370 SQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLMD------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL LRL RLT   R ++  E   L  +I+    IL 
Sbjct: 417 -------------VFELSEIQADHILSLRLRRLTKFSRIELETEQAELLSQIEGLRHILG 463

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  +++ EL+ V   L TPRRT     LL  + +           V   G    VP
Sbjct: 464 SEQALRTVVRDELVEVSKRLATPRRTV----LLSADPQQ----------VETAGKAAAVP 509

Query: 553 LSVYRAQRR------GG----KGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFV 598
           L +  A  +      GG     G   +   +   + D + V    +  + V    + G +
Sbjct: 510 LEIPDAPVQVVLTANGGLIRVDGAEPLEKTESRGIWDTYRVAISATARSQVGLIDASGML 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVVFATKHGN 656
           ++ +V  LP     A   +    +S +Q  G  +  +     D    +     F TK G 
Sbjct: 570 HRVEVVDLPEVPRSASNPSFAGAISASQLLGTEVCPVGLIHVDGDDISG----FVTKLGQ 625

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R +  DF + +    I   L   DE+L    C  E +I++ T   Q +R P + IR  
Sbjct: 626 IKRMR-PDFAKADSFETIL--LTDGDEVLFAAPCPDEAEIVMVTSDAQLLRTPAAKIRP- 681

Query: 717 AGRNSVGVRGISLAKGDQVISMAIV 741
            GR + GV G+ + +G +++    V
Sbjct: 682 QGRVAGGVVGMVIGEGARLLEANFV 706


>gi|49483548|ref|YP_040772.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427869|ref|ZP_06820501.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81651177|sp|Q6GH50|PARC_STAAR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49241677|emb|CAG40365.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128227|gb|EFG57861.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 800

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|260589533|ref|ZP_05855446.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|331082961|ref|ZP_08332081.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540101|gb|EEX20670.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|330399956|gb|EGG79614.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 748

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 256/741 (34%), Positives = 400/741 (53%), Gaps = 30/741 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 5   QENIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+AL  MAQ++   L L++G GNFGS++GD  AA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RLQK      L D+ K  VDF PN+D + +EP VL  + PN+LVNG  GIAVGMAT+IP
Sbjct: 125 ARLQKITQEVYLSDMDKQVVDFLPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D  +A + N +I +  LME I+GPDFPTG +++ +  + + Y TG G I IR
Sbjct: 185 PHNLGEVIDAVIAYMKNNEITVRELMEYIKGPDFPTGGIVVNKDDLLSIYETGTGKIKIR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +EK    +  +V+TEIPY +   N    L  +A L   K+  DI D+ ++S ++G 
Sbjct: 245 GKVEVEKGKNGKSLLVITEIPYTMIGANIGKFLNDVAALSESKKTTDIVDIANQSSKEGI 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+GA  + + N LY+ T L+  F VNM+A+   KPE  +L  I++  V F+ ++
Sbjct: 305 RIVIELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGKPETLSLKQIIEHHVDFQFDI 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K R+   V  GL  A   +D ++ I+R S + E  ++ L+         K
Sbjct: 365 ATRKYTSLLAKERENQEVQEGLIKACDVIDLIIEILRGSKSREQVKKCLIYGETEGIHFK 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   +  +      ++ +E Q  AIL++RL +L GL  + +  E      +I    
Sbjct: 425 --------TKTSERQAKKLHFTERQATAILDMRLYKLIGLEIETLMAEHEETMKKIALYE 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++ S +  +I +EL  VK E    RRT +      + +E  I   ++V  +   GY 
Sbjct: 477 DILNNYSSMSKVIIKELQKVKKEYSRVRRTVVENAAEAVYEEKKIEEMEVVFLMDRFGYA 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + +  S Y   +      +  V+                 +  F+  G +Y  KV  LP 
Sbjct: 537 RTIDKSTYERNKETADSENKYVL----------TCMNTGKICLFTDAGRMYTIKVQELPF 586

Query: 609 GSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+ + +   E+I     F    +   +  + F T  G V+  +  +F  
Sbjct: 587 GKFRDKGIPVDNVSNYDSAAEQIV----FVGSMADIIHTTLCFVTAKGMVKLVEGKEFDV 642

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+   + KL   D I+ V+       ++L TK G  ++F  + I  +  + ++GVRGI
Sbjct: 643 AKRTIS-STKLAEEDSIVMVQNAEAMEHLVLQTKEGYFLKFLKAEIP-YKKKTALGVRGI 700

Query: 728 SLAKGDQVISMAIVLHADADY 748
            + + D  +  A +L    +Y
Sbjct: 701 KMNESD-CVEHAYMLENRTEY 720


>gi|269940853|emb|CBI49235.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 800

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 415/734 (56%), Gaps = 58/734 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +I  S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIHSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G     +   +P+     
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG-----RYLFIPV----- 563

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFATKHGNVRRNKLSD 664
               L +I     G+ ++ I+P  EDE   N         + + VFAT++G ++++ +  
Sbjct: 564 --HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPL 621

Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F +  R  K  IA K+   D+++SV    ++  I + T  G  + +  S +    G  + 
Sbjct: 622 F-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD-TGLRAA 679

Query: 723 GVRGISLAKGDQVI 736
           GV+ I+L   D V+
Sbjct: 680 GVKSINLKAEDFVV 693



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  F   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 615

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 616 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGM-----SLTYNTSE 670

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 671 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 731 ITLLKELK 738


>gi|228983129|ref|ZP_04143388.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228777312|gb|EEM25620.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 740

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 264/739 (35%), Positives = 416/739 (56%), Gaps = 36/739 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S + EM++S++ YA+ V+  RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K A
Sbjct: 5   IETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG++A+Y+++ + AQD+     LI+G GNFGSVDGD  AA RYTE RL
Sbjct: 65  RIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  ++ DL K  VDFR N+D S +EPVVL A+ PN+LVNGG GIAVGMA   P H +
Sbjct: 125 SPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTPPHGV 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             VVD  +A  D  DID+++L++II  PD+P+G +I  +  +++ Y TG G  VIR    
Sbjct: 185 NSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNELRDLYRTGIGKAVIRAKID 244

Query: 256 IEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE     R+ +VV EIPY    +K  +  K+  +V EK++ +I ++ DESD+ G R+V+E
Sbjct: 245 IEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGIRIVLE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   D +LN+LY  T LQS  S   + L    P    L    K +  F++E+  +R 
Sbjct: 305 VKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNGVPTTINLKDYCKHYFDFQKEITRKRY 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +YLL+KA+ R  +L GL  A   +D ++ ++R +   + A+  LM+ +  +      I  
Sbjct: 365 EYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTES------ISF 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                  I        +E Q +AIL++RL +L GL  + +  E   +  E++E   +L S
Sbjct: 419 KTKKHENIAK--KFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLGS 476

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV-P 552
              +L +IK+ L   K +    RRT I E    +E  + I  ED+ V +   GY K V  
Sbjct: 477 EKEMLKVIKKYLRGFKKDFGRERRTEIQEKKT-IEYVEEIKEEDVWVLIDKFGYTKSVDT 535

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLF--IVSTHTSVL-FFSSLGFVYKEKVWRLPIG 609
           +SV R+               E+ +++    I++ +TS L  F++ G +Y+ K+  +P  
Sbjct: 536 ISVERSS--------------EETLSEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKV 581

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  +  +  + + E    I    E E+      V+  TK G +++   S+ I  +
Sbjct: 582 KIKDKGVPIQRLGKMKKNEYPLYITTNTELETER----VIMLTKTGLIKQTLCSELIS-S 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           RS  +A KL+  DE++ +    + + D+L+ +K G  +RF I+ I V   +N+ GV+ +S
Sbjct: 637 RSVVVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLR-KNAKGVKAVS 695

Query: 729 LAKGDQVISMAIVLHADAD 747
           L + D +  + I+   + D
Sbjct: 696 LMEEDVIEGVYILNENNKD 714


>gi|78778390|ref|YP_396502.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
 gi|78711889|gb|ABB49066.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
          Length = 813

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 278/799 (34%), Positives = 437/799 (54%), Gaps = 81/799 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  +K +
Sbjct: 2   DKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S +   ++G GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +H   L+++  +TV+F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+I+N ++    L  II+GPDFPTG  ++    I+  YATG+GSI I
Sbjct: 182 PPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSITI 241

Query: 251 RGVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV + E     K    R  +++TE+P+Q++KA  +EK+AELV   +I  I+D+RDESDR
Sbjct: 242 RGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++A+++++ LY+ T+LQ+ F    +AL   KP +  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    ++  +L GL+ A  N+ +++ II  S N   A+ +         
Sbjct: 362 EETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSK--------- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               LID+              YLS  Q  ++L++ L +LT L ++ I  ++  L  +  
Sbjct: 413 ----LIDI-------------FYLSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKD 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTV 542
              ++L+ R  LL ++  ELL +K + +  R+T++++ +   E+ + I   + ED +   
Sbjct: 456 YFQNLLNERKLLLELLVDELLILKKKYNVKRKTKLLKNIDQNEELETINNQILEDFINKK 515

Query: 543 SHLG-----YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + L      Y++++ L+ Y+      K    V    ++     FI +   +V     +G 
Sbjct: 516 TKLFIDNRLYLRKMILNNYK------KSFEDVNKIIDNKNIQKFICNIDKNV---KIIGI 566

Query: 598 VYKEKV----WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
            Y  KV    W   I +     K +I  +  N+      I+ F   +    N Y+     
Sbjct: 567 TYTGKVFHINWESNINNDYKLDKKIIGNIDQNK------IINFHSIKKGIKN-YLCILNS 619

Query: 654 HGNVRRNKL-SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711
            G  ++     D I+ NR   I  KL +  + +     ++E ++++ T +G+  +F +S 
Sbjct: 620 DGRFKKVLFDEDMIKSNRCFSIT-KLKNNIKTIDSFIFSEEKNLIILTSIGRMFKFNLSN 678

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY------------DERICYMKHMS 759
                  + S G+    L   ++++S     + +  Y               I Y    S
Sbjct: 679 KFLTPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIYLVSRKGKIFCINSNEIYYANEYS 738

Query: 760 AQRRLISGDTEEITSLKND 778
                  G   EIT LKND
Sbjct: 739 L------GYLNEITQLKND 751


>gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 821

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/509 (44%), Positives = 317/509 (62%), Gaps = 28/509 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I+ + ++ EM+ S+L YA++VI  RA+PD RDGLKPV RRIL+ M QMG+  ++ 
Sbjct: 12  EADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQMDQMGLRPDRG 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LRL L++G GNFGS+D D PAA RY
Sbjct: 72  HVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARY 130

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+  AA  L+  LG+DTVDF PNYD  F +P VL A +P +LVNG  GIAVGMATNI
Sbjct: 131 TEARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGASGIAVGMATNI 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E + G V ++D+PD  +  LM  + GPD P G VI+G  G+K AY TGRG+   
Sbjct: 191 APHNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGGVIVGLEGVKEAYETGRGAFKT 250

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    +E+ +  +  ++VT++PY V    ++EKI E V   R+  I+ +++ +DR  G R
Sbjct: 251 RAKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISSVQNLTDRIHGLR 310

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K G + + +L QLY+ T L+  FS+N VAL G +P+   L  IL+ FV  R +V 
Sbjct: 311 LVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPQVMGLKQILRVFVDHRLDVT 370

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L K  +R H++ GL IA+ ++D+V+ IIR S + + AR  LM           
Sbjct: 371 TRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARERLMT---------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q   ILELRL RLT   R ++  E + L   I E  +
Sbjct: 421 ----------------AFDLSQAQADYILELRLRRLTKFSRIELEAERDELAARIAELRE 464

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           +L S   L  ++K+EL  V + L TPRRT
Sbjct: 465 VLESPELLRALVKRELAEVSERLGTPRRT 493


>gi|116090719|gb|ABJ55986.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 325

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/325 (60%), Positives = 258/325 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 61  DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 121 TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 181 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+
Sbjct: 241 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYK 300

Query: 330 YTSLQSLFSVNMVALNGYKPERFTL 354
            T+LQ+ F +N++AL   +P+  +L
Sbjct: 301 QTALQTSFGINLLALVDGQPKVLSL 325


>gi|312275252|gb|ADQ57976.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 279/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|312275274|gb|ADQ57987.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275278|gb|ADQ57989.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 279/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGIRDGQYYLSE 401


>gi|312275246|gb|ADQ57973.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275258|gb|ADQ57979.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275272|gb|ADQ57986.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275276|gb|ADQ57988.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275280|gb|ADQ57990.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 279/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDYAVYNTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 787

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 265/694 (38%), Positives = 387/694 (55%), Gaps = 52/694 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVK 73
           G    S+  E +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M     +    K+ K
Sbjct: 27  GELDASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQADEKLSHEAKHKK 86

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A++ G V+G+YHPHG+ A+YDA+ RMAQ +SLRL L++G GNFGS+DGD PAA RYTE 
Sbjct: 87  SAKVVGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLDGDSPAAYRYTEA 146

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  LLD+L   TV FR NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 147 RLTAAAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTGIAVGMATNIPPH 206

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           NL E+    +A+ D+P++++  L++ I+GPDFPTG  IL  +  ++  Y  GRG+I +RG
Sbjct: 207 NLRELTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREIYEEGRGAIRVRG 266

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E T    + +VVT +PY V KA ++E+IAE++ ++++  + D+RDES     RVV+
Sbjct: 267 EYKLE-TQKRSKILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVRDESTTD-VRVVL 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFREE 367
           E+K+ A  ++I+  L+++T LQ  F+VN+  L     +  +P +  L  +L+ F+ FR E
Sbjct: 325 EIKKDADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLKDMLRHFLDFRYE 384

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V  RR ++ L     R H+L G  +    LDE +RIIR S   + A +++M++       
Sbjct: 385 VTERRYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQKIMKK------- 437

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q  AILELRL RL  L  + IR EL     + K  
Sbjct: 438 -------------------FGLDKEQVDAILELRLYRLAKLEINIIREELADKRSQAKSI 478

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDC-IVREDMVVTVSHL 545
             IL S  +L G++K EL  V + L   RRT+      ++E D D  I+ ED  V ++  
Sbjct: 479 EAILRSEKKLWGVVKTELGEVAELLGDARRTKTGGAAAELEFDADAYIIDEDAHVVLTRD 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++KR         +R  K  +   +R+ D V  +   ST   V FF++ G  Y  K++ 
Sbjct: 539 GWLKR---------QRELKDPTSTRLREGDEVMAVLAGSTKEHVAFFTNYGSAYVIKIYD 589

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S    G  +  +     GERI   M F       + L  V +   G  +R     F
Sbjct: 590 VPATS--GYGDPVQKLFKFKDGERIVAAMAFDPRAMPPDELLTVSSGGFG--QRFASEPF 645

Query: 666 IQ-INRSGKIAMKLDSRDEILSVETCTQENDILL 698
            Q   R+G+   +    DEI+ V   T+E+DI++
Sbjct: 646 TQPTTRAGRKFARPPKGDEIVDV-VATEEDDIVV 678


>gi|323484277|ref|ZP_08089645.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
 gi|323402429|gb|EGA94759.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
          Length = 746

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 273/759 (35%), Positives = 425/759 (55%), Gaps = 37/759 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +   ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 5   IITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAEEVYLKDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A IDNP+     L++I+ GPDFPTG +I  ++ + N Y TG G I +R   
Sbjct: 184 LGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIANKSDLLNIYETGSGRIKLRAKL 243

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  K   D+++++++EIPY +  A +   L  IA+LV  K++ D+ D+ ++S+++G R
Sbjct: 244 EVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+ A  + I N LY+ T L+  F VNM+A+ G +PE  TL GILK ++ F+ E  
Sbjct: 304 IVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIAGGRPETLTLKGILKNYLDFQYENN 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+   LL K  ++  +  GL  A   +D ++ I+R S N + A+  LM+   + S+I  
Sbjct: 364 TRKYNVLLEKELEKKEIREGLIKACDVIDLIIAILRGSKNLKDAKACLME--GDISNIHF 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                D+ +        +  +E Q  AILE+RL +L GL    +  E      +IKE   
Sbjct: 422 KTPGFDEDAR------KLRFTEKQASAILEMRLYKLIGLEILALEKEYKETLRKIKEYEK 475

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILSS+  +  +IK++L  +K E  TPRRT I +G   + DE  +   ++V  +   GY K
Sbjct: 476 ILSSKLTMDDVIKKDLEEIKAEFATPRRTLIEDGKEAVYDETAVEIREVVFVMDKFGYGK 535

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V  + Y   +   +G +  V+      TD         +  F+  G +++ K   +P G
Sbjct: 536 LVDRATYDRNQETIEGENPHVI--PCLNTD--------KICLFTDTGLLHQVKASDIPFG 585

Query: 610 SPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             + +G  + N+   +   ER   I+    + S+     ++FATK   V+     +F + 
Sbjct: 586 KMRDKGTPVDNLCKFDGTKERPIFII----NASALVGRRLLFATKGAMVKLVPGEEF-ET 640

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N     A KL   D ++S++      + +L T  G  +RF +  I     +NS GVRGI 
Sbjct: 641 NNRMVAATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDLEEISTLK-KNSKGVRGIK 699

Query: 729 LAKGDQVISMAIVLHADAD----YDERICYMKHMSAQRR 763
           L +G++ +    +L  D++    Y E+  ++  +   +R
Sbjct: 700 LGRGEE-LEQVYLLGTDSEQTVMYKEKQVHLNRLKIGKR 737


>gi|312275250|gb|ADQ57975.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275256|gb|ADQ57978.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275260|gb|ADQ57980.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275262|gb|ADQ57981.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275264|gb|ADQ57982.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275266|gb|ADQ57983.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275270|gb|ADQ57985.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275282|gb|ADQ57991.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275284|gb|ADQ57992.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 279/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|325661697|ref|ZP_08150320.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471950|gb|EGC75165.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 746

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 253/761 (33%), Positives = 420/761 (55%), Gaps = 36/761 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 3   EQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+AL  MAQD+   ++L++G GNFGS++GD  AA RYTE
Sbjct: 63  KCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYTE 122

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IP
Sbjct: 123 SRLAKITQEAYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+D   A + N +I  + L+  ++GPDFPTG +++ +  + + Y TG G I +R
Sbjct: 183 THNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVVNKDDLPSIYETGTGKIKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E   G ++++V++EIPY +  A +   L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 243 GKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 303 RIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADGRPETMGLRQIIEHHVDFQFEL 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+ K LL K   +  +  GL  A   +D ++ I+R S + + A+  L+  +       
Sbjct: 363 MTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVE----- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              ++   ++ +      +  +E Q  AILE+RL +L GL  + +  E       I++  
Sbjct: 418 ---NITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I  EL   K      RRT I  G   + +E+ +  +D+++ +   GY 
Sbjct: 475 DILNNYDSMTNVIIDELEGYKKAYARERRTVIENGKEAIYEENKVEEQDVILLLDRFGYA 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V ++ Y   +      +  ++                 V  F++ G +++ KV  +P 
Sbjct: 535 KTVDVATYERNKEAADSENKHIVP----------CKNTGKVCIFTNTGKMHQVKVSDIPY 584

Query: 609 GSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +   + N+ + +   E I  +      E    +  ++F T+   +++    +F+ 
Sbjct: 585 GKFRDKSVPIDNLGNYDSAQEEIVYLCA----EEELKDAKLLFVTRQSMLKQVAGEEFL- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +++    A KL   DE+++V    +E +I+L T+ G  +RF +S +     + +VGVRG+
Sbjct: 640 VSKRTTAATKLQEEDEVVAVIKVLEEQNIVLQTEGGYFLRFLLSEVPE-KKKGAVGVRGM 698

Query: 728 SLAKGDQVISMAIVLHAD-----ADYDERICYMKHMSAQRR 763
            L K D++    I L AD       Y E+   +  +   +R
Sbjct: 699 KLQKSDRI--EQIYLFADGVDTKGSYQEKEVSLNRLKLNKR 737



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E +LK+  +L V+ +   K+ +  +F +S R+      T  +K+ E   +VAV  V +
Sbjct: 611 CAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRT------TAATKLQEEDEVVAVIKVLE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              I+L ++ G  +R  ++E+    +   GV      K +R+  +
Sbjct: 665 EQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRIEQI 709


>gi|294786988|ref|ZP_06752242.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315226629|ref|ZP_07868417.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|294485821|gb|EFG33455.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315120761|gb|EFT83893.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 906

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/529 (43%), Positives = 326/529 (61%), Gaps = 33/529 (6%)

Query: 4   HIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           H  S D    ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M Q
Sbjct: 7   HAASYDPRTVKQKIVDTPLGEEMSTSFLAYAYSVIYARALPDARDGLKPVQRRIIYQMGQ 66

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           M +  +K Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQD+++RL L++G GNFGS+D 
Sbjct: 67  MNLTPDKPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQDFAMRLPLVDGHGNFGSLD- 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL  AA  + + + ++TVDF PNYD   QEP VL +  PN+LVNG  GI
Sbjct: 126 DGPAASRYTEARLAPAALGMNESINEETVDFAPNYDNKLQEPTVLPSAIPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+ THNL EVV G   ++ +PD   D LM  I GPD P G +I+GR GIK AY 
Sbjct: 186 AVGMATNMITHNLAEVVAGAKYLMAHPDATTDDLMHYIPGPDLPGGGIIMGREGIKEAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRGS   R  +HIE  +  ++ IVVTE+P+ V    +LE+I++ V+ K++  I+   D 
Sbjct: 246 SGRGSFSTRATTHIENVTARKKAIVVTELPFMVGPEKVLERISDGVKNKKLDGISGAIDL 305

Query: 303 SDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G     +L QL++YT L+  F++N VAL G +P    L  +L  +
Sbjct: 306 TDRHNGTRLVIEIKTGFDPHAVLGQLFKYTPLEDSFTINNVALVGGRPHTMGLKELLDVW 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EV+ RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S N ++A+  LM   
Sbjct: 366 IQHRREVITRRSQYRKRKAEERLHLVDGLLLALIDIDEVIEVIRSSDNADSAKTRLM--- 422

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L E+Q + IL+LRL RLT + R ++ +E + L 
Sbjct: 423 -----------------------AVFDLDEIQAQYILDLRLRRLTKMSRIELESERDDLQ 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I E  +IL+S  R   ++ + +  V  +  TPRRT     LLD+++E
Sbjct: 460 RAIAELDEILASDQRRDAVVIESMDHVVRDYGTPRRTV----LLDVDEE 504


>gi|253580825|ref|ZP_04858088.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847895|gb|EES75862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 748

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/747 (34%), Positives = 410/747 (54%), Gaps = 36/747 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIPTDYAEVMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGKTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K      L+DL K+ VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQDVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEVVD   A + N DI +  LM  ++GPDFPTG +++ +  +   Y TG G +
Sbjct: 182 SIPPHNLGEVVDAVKAYMKNNDISVKGLMRYLKGPDFPTGGLVVNKDDLLRIYETGTGKL 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG     K  G R+Q+V+TEIPY +   N    L  IA LV  K+  DI D+ ++S +
Sbjct: 242 RVRGKVETVKLKGGRQQLVITEIPYTMIGANIGKFLNDIASLVENKKATDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V++LKR A  + + N LY+ T L+  F VNM+A+   +PE  +L  +++  V F 
Sbjct: 302 EGIRIVLDLKRDADVENLTNMLYKKTKLEDTFGVNMLAVADGRPETLSLKQVIEHHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V  R+   LLNK +++  +  GL  A   +D ++ I+R S N E  ++ L+       
Sbjct: 362 FDVTTRKYTTLLNKEQEKKEIQEGLIKACDVIDLIIEILRGSKNREQVKKCLV------D 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            + + I     SS        ++ SE Q  AIL++RL +L GL  + ++ +       I 
Sbjct: 416 GVTEGIRFKGKSSEKAAQ--KLHFSEKQAAAILDMRLYKLIGLEIEALQADYAETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +  +I +EL  +K E  T RRT I      + +E  +   ++   +   
Sbjct: 474 IYEDILNNYDSMAEVIMKELDQIKKEYGTKRRTVIENAEEVVYEEKKMEEMEVTFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY++ +  S Y   +      +  V          F       +  F+  G ++  KV  
Sbjct: 534 GYMRTIDKSAYERNKEAANAENKYV----------FNCMNTDKICIFTDNGKMHSIKVAD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G    N+ + +   ER+  + P     +S     ++F T     +    ++
Sbjct: 584 IPLVRFRDKGTPADNLSNYDSAQERMLYVAPL----ASVKENTLLFVTAASMCKLVSGAE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP---ISAIRVFAGRNS 721
           F  + +   ++ KL   D ++ V +  +   ++  ++ G  +RF    ISA++    + S
Sbjct: 640 F-DVAKRTIVSTKLAEEDSLIFVGSADEMEQVVFQSEGGYFLRFQKQDISAMK----KTS 694

Query: 722 VGVRGISLAKGDQVISMAIVLHADADY 748
           +GVRG+ LA+GD+ +  A +L +  +Y
Sbjct: 695 IGVRGMKLAEGDK-LDHAYLLESRQEY 720


>gi|326692693|ref|ZP_08229698.1| DNA topoisomerase IV subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 812

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 267/735 (36%), Positives = 408/735 (55%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K A
Sbjct: 5   ITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE RL
Sbjct: 65  KSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP HNL
Sbjct: 125 SKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+    + ++D+P+  L ALM  I+GPDFPTG +I G  GIK AY TGRG IV+R  + 
Sbjct: 185 KEINAALIYLLDHPEAPLSALMRYIKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAKTE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I    G +++I +TE+PY+V K+ ++ KI  +   K +  IA++RDESDR+G  +VIEL 
Sbjct: 245 ISDLKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKGVAGIAEVRDESDREGMSIVIELN 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G +A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF+ FR+EVV++R+ +
Sbjct: 305 KGTNAEGILTYLFKKTDLQISYNFNMVAIHNQRPVTVNLKQGLQAFLDFRKEVVLKRSAF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL   ++ LDEVV  IR S N    R++  Q            +LID
Sbjct: 365 ELAKAQARQHIVEGLIRMLSILDEVVATIRASQN----RKDATQ------------NLID 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              +T          + Q  AI+ L+L RLT      +  E  +L  +I     IL+  S
Sbjct: 409 KFQFT----------QPQAEAIVTLQLYRLTNTDVTQLEAEFATLTAKINHLNLILTEES 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            L  +I+ EL ++     TPRR++I   VE L+ ++    I  ED+ V VS  GY KR  
Sbjct: 459 ALKDVIRDELTAITKTYTTPRRSQIEAEVEDLV-IDTAVTIAEEDVQVLVSRNGYYKRAS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+A        +G  + D+D    +  ++T   +  F++ G V    V  LP    +
Sbjct: 518 LRSYKA----SDADNG--LADDDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKWK 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QINR 670
             G+     L+ N       I     D  +    + +  T  G +++  L+D +     +
Sbjct: 572 DTGEHFSQQLA-NWRPDEYVIQVVAVDNLTQGGAFTI-VTNDGFIKQTTLADMVPKAYKK 629

Query: 671 SGKIAMKLDSRD-EILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +A+KL + D ++++V       + D+LL +  G  +RF +S +     R + GV+ +
Sbjct: 630 KTSMAIKLKTDDSQVVNVAYTPTVTDQDVLLLSHNGVGLRFGLSDVPEIGAR-TAGVKAM 688

Query: 728 SLAKGDQVISMAIVL 742
            L +GD  I  A+++
Sbjct: 689 DL-RGDDTIQAALMV 702



 Score = 41.2 bits (95), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           LK D S   N++        + +Q +L +S  G G R    D         G++A D+  
Sbjct: 637 LKTDDSQVVNVAYTPT----VTDQDVLLLSHNGVGLRFGLSDVPEIGARTAGVKAMDLRG 692

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            + I A  A+   + + Q+ +V++ G    +PV EI  + RA KG++IF+  K
Sbjct: 693 DDTIQA--ALMVTSPDQQVAIVAENGAFKYMPVAEINHSKRANKGLLIFTQKK 743


>gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
 gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
          Length = 782

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/717 (35%), Positives = 407/717 (56%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  ++K A+ISG+ MG +HPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSSGGFLKSAKISGDTMGDFHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAEAMLEGLNE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFR NYDG   EP VL A +PN+L NG  GIAVGMATNIP HN+ E++D C+ +I  
Sbjct: 151 NAVDFRDNYDGRLTEPAVLPATFPNILANGASGIAVGMATNIPPHNIAELIDACIHLIRT 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG +I+  +  I  AY+TGRGS  +R    +E     + QIV
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCQHEVEDLGRGQWQIV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K++  +AD+RDES     R+++E K +    +V++N 
Sbjct: 271 VTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDES-ADDIRIILEPKSKNVDPEVLMNM 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           ++R + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR+++ ++K   R  
Sbjct: 330 MFRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMDKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   LM+  W+    +D      ++ Y    +G
Sbjct: 390 VLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMREDWD----RDHPRAYSEAEYVSPGEG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+EVQ  AIL +RL  L  L   ++  E ++L  E    +++L S       I ++L
Sbjct: 443 VGELTEVQAEAILNMRLRSLRRLEEIELTRERDALREERAGLVELLGSEELQWSRITEQL 502

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +         RRTR  E   + D+  E  I RE + V  S +G+++ +   +   
Sbjct: 503 KDTKKQFGKDYAGGARRTRFAEAGEVEDVPLEAMIDREPITVVCSQMGWIRAMTGHIDLN 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+ L
Sbjct: 563 RE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGG--RGMGEPL 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +  ++  P+         ++ A+  GN       D +   RSGK  + 
Sbjct: 613 RLMVDLPNEVEIVDILIHNPDGR-------LLVASDAGNGFICAEKDIVAQTRSGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   D+   +    + + + + ++ G+ + F +  +   +    V ++  ++A+G Q
Sbjct: 666 VKD-DDKAKICIPVEGDHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQ 721


>gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
 gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
          Length = 809

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 266/677 (39%), Positives = 389/677 (57%), Gaps = 64/677 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNS----YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           SD++ +  + + ++ + ++ +    YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++
Sbjct: 2   SDDDLDPNMNARNLAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRRL 61

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD
Sbjct: 62  RLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGD 121

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+   +  LL+ L +++VDFRPNYDG  +EP VL A YPN+L NG  GIA
Sbjct: 122 NPAASRYTEARMTVMSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIA 181

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYA 242
           VGMATNIP HN+GE+++ C+ +I +P+   D LM+ + GPDFPTG VI+     I  AY 
Sbjct: 182 VGMATNIPPHNIGELINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIATAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R   H+E     + Q VVTEIPYQV K+ ++E+IAEL++ K+I  +AD+RDE
Sbjct: 242 TGRGSIRLRARWHVEDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADVRDE 301

Query: 303 SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKA 360
           S     R+V+E K +    D+++N L+R + L+  FS+NM V ++G  P+  +L   L+A
Sbjct: 302 S-ADDIRMVLEPKTKNVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKECLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FR +V++RR+K+ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A   LM  
Sbjct: 361 FLDFRRDVLIRRSKHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LMYE 417

Query: 421 SWN---------ASDIKDL-----------IDLIDDSSY----TIGSDGTMY-------- 448
            W+         A+D +D            ++L DD        +  DGT          
Sbjct: 418 DWSRPHQSTIPRATDERDYRSPLTGVDVKALELRDDPDAVERGVLADDGTSSAVPRRFVG 477

Query: 449 ----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S     G IK+E
Sbjct: 478 RSEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEE 537

Query: 505 LLSVKDELDT--PRRTRIVEGLLDMEDEDC-----IVREDMVVTVSHLGYVKRVPLSVYR 557
           L  VK        R  R+       E ED      I RE + V  S +G+++   ++ + 
Sbjct: 538 LNEVKKTFTKGYKRGQRLTTFAEATEAEDVPLEAMIEREPVTVVCSKMGWIR--AMTGHI 595

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           A  R  K       +D D    +F   T   +L F S G  Y      LP G  +  G+ 
Sbjct: 596 ALDRELK------FKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGG--RGMGEP 647

Query: 618 LINILSLNQGERITTIM 634
           L  ++ L     I  I+
Sbjct: 648 LRLMVDLPNDTEIVDIL 664


>gi|331084710|ref|ZP_08333798.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410804|gb|EGG90226.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 746

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 252/761 (33%), Positives = 420/761 (55%), Gaps = 36/761 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 3   EQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+AL  MAQD+   ++L++G GNFGS++GD  AA RYTE
Sbjct: 63  KCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYTE 122

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IP
Sbjct: 123 SRLAKITQEVYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+D   A + N +I  + L+  ++GPDFPTG +++ +  + + Y TG G I +R
Sbjct: 183 THNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVVNKDDLPSIYETGTGKIKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E   G ++++V++EIPY +  A +   L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 243 GKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 303 RIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADGRPETMGLRQIIEHHVDFQFEL 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+ K LL K   +  +  GL  A   +D ++ I+R S + + A+  L+  +       
Sbjct: 363 MTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVE----- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              ++   ++ +      +  +E Q  AILE+RL +L GL  + +  E       I++  
Sbjct: 418 ---NITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I  EL   K      RRT I  G   + +E+ +  +D+++ +   GY 
Sbjct: 475 DILNNYDSMTNVIIDELEGYKKAYARERRTVIENGKEAIYEENKVEEQDVILLLDRFGYA 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V ++ Y   +      +  ++                 V  F++ G +++ KV  +P 
Sbjct: 535 KTVDVATYERNKEAADSENKHIVP----------CKNTGKVCIFTNTGKMHQVKVSDIPY 584

Query: 609 GSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +   + N+ + +   E I  +      E    +  ++F T+   +++    +F+ 
Sbjct: 585 GKFRDKSVPIDNLGNYDSAQEEIVYLCA----EEELKDAKLLFVTRQSMLKQVAGEEFL- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +++    A KL   DE++++    +E +I+L T+ G  +RF +S +     + +VGVRG+
Sbjct: 640 VSKRTTAATKLQEADEVVAIIKVLEEQNIVLQTEGGYFLRFLLSEVPE-KKKGAVGVRGM 698

Query: 728 SLAKGDQVISMAIVLHAD-----ADYDERICYMKHMSAQRR 763
            L K D++    I L AD       Y E+   +  +   +R
Sbjct: 699 KLQKSDRI--EQIYLFADGVDTKGSYQEKEVSLNRLKLNKR 737



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E +LK+  +L V+ +   K+ +  +F +S R+      T  +K+ E   +VA+  V +
Sbjct: 611 CAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKRT------TAATKLQEADEVVAIIKVLE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              I+L ++ G  +R  ++E+    +   GV      K +R+  +
Sbjct: 665 EQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRIEQI 709


>gi|281429788|gb|ADA70033.1| DNA gyrase subunit A [Bacillus sp. NK-2]
          Length = 341

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/341 (57%), Positives = 267/341 (78%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G
Sbjct: 121 ILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS 
Sbjct: 181 VLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A 
Sbjct: 241 GKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAH 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           VILN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++
Sbjct: 301 VILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYL 341


>gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 782

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 265/717 (36%), Positives = 404/717 (56%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGDVMGNYHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LL+ L +
Sbjct: 91  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVAEALLEGLNE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG+  EPVVL A++PN+L NG  GIAVGMATNIP HN+ E+ D C+ +I  
Sbjct: 151 DAVDFRDNYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNISELCDACLHLIKT 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG VI+     I  AY TGRGS  +R    +E     + QIV
Sbjct: 211 PDARDDTLLNYVPGPDFPTGGVIVEPPENIAQAYRTGRGSFRLRCKFEVEDLGRGQWQIV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES     R+++E + +    +V++  
Sbjct: 271 VTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDES-ADDIRLILEPRSKNVDPEVLMGM 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R+EV++RR+++ + K   R  
Sbjct: 330 LYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRHRMAKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  +A  NLD V+ IIR+  +P+ A   LM+  W      D +    ++ Y     G
Sbjct: 390 VLEGFIVAFLNLDRVIDIIRYDDDPKAA---LMREDWGI----DHVRATSEADYVSPKPG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E + L +E     D+L+  +     I ++L
Sbjct: 443 EGELSEVQVDAILNMRLRSLRRLEEMELVRERDELMLERANLEDLLADPALQWAKIAEQL 502

Query: 506 LSV-----KDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
                   KD     RRT+  E   + ++  E  I RE + V  S +G++        RA
Sbjct: 503 RETKKTFGKDYEGGARRTQFAEAGQVEEVPLEAMIDREPITVVCSQMGWI--------RA 554

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                  +  +  +D D    +F   T   +L F+S G  Y      LP G  +  G+ L
Sbjct: 555 MTGHIDLKRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSAANLPGG--RGMGEPL 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ + I  ++  P  +       ++ A+  GN       D +   R+GK  + 
Sbjct: 613 RLMVDLPNEAQIIDILIHKPGRK-------LLVASDAGNGFMVPEDDVLAQTRNGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   +  +  +    ++ + + ++ G+ + FP + +        V ++  ++A+G Q
Sbjct: 666 VKGGETAMICKPVDGDH-VAVVSQNGKFLVFPTNELPEMTRGKGVRLQKYNMARGRQ 721


>gi|225353986|gb|ACN88536.1| DNA gyrase subunit A [Arcobacter sp. CL-S1]
          Length = 470

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/497 (45%), Positives = 324/497 (65%), Gaps = 27/497 (5%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           +IL+ M  + +     Y K ARI G+V+GKYHPHG++++YDAL R+AQ++S+R  L++GQ
Sbjct: 1   KILYAMHDLNMTARSPYKKSARIVGDVIGKYHPHGDSSVYDALVRLAQNFSMRAPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGSVDGD  AA RYTE R+ K +  +L DL KDTV+F  NYD + +EP VL  R P +
Sbjct: 61  GNFGSVDGDNAAAMRYTEARMTKISEEILKDLDKDTVNFVQNYDDTLKEPAVLPTRVPTL 120

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IP HNL E+++  +  IDN +   + LM+ I+GPDFPTG  I GR
Sbjct: 121 LLNGSEGIAVGMATKIPPHNLKELLEAVLYTIDNQEATAEDLMQFIQGPDFPTGGTIFGR 180

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI +AY TGRG + IR   HIE T G +E IV+ E+PYQVNK+ ++E+IA L +EK + 
Sbjct: 181 RGIIDAYKTGRGRVKIRAKHHIE-TKGKKEVIVLDELPYQVNKSRLIEQIAILAKEKNVE 239

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+++RDESDR+G RVVIELK+ A ++++LN LY+ T +++ F + ++A++  +P+ F L
Sbjct: 240 GISEVRDESDREGIRVVIELKKDAMSEIVLNNLYKSTPMETTFGIILLAVHNKEPKVFNL 299

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++ R+ V++RRT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+
Sbjct: 300 PELLRLFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAK 359

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +R                            LS +Q++AIL++RL RLTGL RD + 
Sbjct: 360 EKLQER--------------------------FELSLIQSQAILDMRLGRLTGLQRDKLE 393

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            +   +   I E   IL S  +L  IIK+E+  +K++    RR  I +   +++ ED I 
Sbjct: 394 ADYQDILRLIHELEAILKSEEKLNEIIKEEIQEIKEKYSDERRREIEDSYDEIDIEDLIP 453

Query: 535 REDMVVTVSHLGYVKRV 551
            E M V ++  GYVKRV
Sbjct: 454 NEPMAVNITRNGYVKRV 470


>gi|291459210|ref|ZP_06598600.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418464|gb|EFE92183.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 747

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 415/734 (56%), Gaps = 30/734 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +   ++EMQ SYL Y+++VI  RA+PD+RDGLKPV RR+L+ M ++ V  ++  +K A
Sbjct: 5   ILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLYDMNELHVHSDRPTLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+A+IY+ L  +AQD+     L++GQGNFGS++GD  AA RYTE RL
Sbjct: 65  RICGDTMGKYHPHGDASIYETLVVLAQDFKRMQPLVQGQGNFGSIEGDSAAAPRYTEARL 124

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           Q+     +L DL + TV F+PNYD   +EP VL AR P  L+NG  GIAVGM T+ P+HN
Sbjct: 125 QRFTDEVMLRDL-ETTVPFQPNYDEKLREPEVLPARIPYFLLNGSEGIAVGMTTSAPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++D  +A + NP ++   ++  + GPDFPTG +I  R+ + + Y TG G + +RG  
Sbjct: 184 LSEIIDLVLAYLKNPAMETREMLHYLPGPDFPTGGIIANRSELLDIYRTGSGKLKLRGKL 243

Query: 255 HIEKTSG--DREQIVVTEIPY-QVNKAAM--LEKIAELVREKRIVDIADLRDESDRQGYR 309
             EK  G  D+++++VTEIPY  + +  M  ++  A LV EK++ +I D+ ++SD+ G R
Sbjct: 244 VFEKRKGRSDKDKLIVTEIPYTMIGQGIMKFMQDTAALVEEKKLPEITDISNQSDKDGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK GA  D I N LY+ T L+  F VNM+A+   +PE  +L GIL+ +++F+ +++
Sbjct: 304 IVLELKSGADIDRITNILYKKTKLEDSFGVNMLAIVKGRPEVLSLRGILREYLSFQYQLI 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            ++ + LL K   R  +  GL  AV  +D ++ ++R S   E A++ LM        +++
Sbjct: 364 EQKYQKLLEKELLRKEIQEGLIRAVDCIDAIIALLRSSQKQEEAKKALMGEGSEGIRLRE 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                 D  Y        + +E Q +AIL+++L++L GL    ++ E       IKE   
Sbjct: 424 -----RDREYR-EQIRDFHFTERQAQAILDMKLSKLIGLELLALQREYRESLKSIKEYRG 477

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILSSR R   ++ QEL  +++    PRRT + +G   + DE  +    +V      GYVK
Sbjct: 478 ILSSRERANELLAQELSEIRERYFVPRRTLLEDGKDAVYDESAVEEMQVVYVQDRFGYVK 537

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            +  +VY+  +         ++ +  F   L        +L F+  G +++ ++  +P+G
Sbjct: 538 LLDETVYQRNQEA-------LLSESRF---LIPCKNTDRILLFTDQGRLHQIRLLDVPLG 587

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  + NI   +  E    I+ F   ++  +   ++F ++ G  +R    +F   N
Sbjct: 588 KFRDKGVPIDNISKYSASEE--EIL-FAAAKAELSGKELLFVSQMGLAKRVPSEEFDTAN 644

Query: 670 RSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           R    A KL   D + SV +     E D++L ++    +RFPI  +     +N+ GV  +
Sbjct: 645 RLVS-ATKLQEGDRVASVLSVPGESEEDLVLQSEASYFLRFPIKEL-PLQKKNAKGVLSM 702

Query: 728 SLAKGDQVISMAIV 741
            L +GD++ S  ++
Sbjct: 703 KLGRGDRIRSALLI 716



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           EL  KE  +L VS+ G  KR  S +F  +NR    + AT + + + + ++++V P    +
Sbjct: 617 ELSGKE--LLFVSQMGLAKRVPSEEFDTANRL---VSATKLQEGDRVASVLSV-PGESEE 670

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++L S+    +R P+ E+ +  +  KGV+     + +R+ S 
Sbjct: 671 DLVLQSEASYFLRFPIKELPLQKKNAKGVLSMKLGRGDRIRSA 713


>gi|291546805|emb|CBL19913.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus sp. SR1/5]
          Length = 748

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/729 (35%), Positives = 397/729 (54%), Gaps = 30/729 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y KCARI G+ MGK
Sbjct: 17  MQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPYRKCARIVGDTMGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLL 143
           YHPHG+++IYDAL  MAQ++     L++G GNFGS++GD  AA RYTE RL+K      L
Sbjct: 77  YHPHGDSSIYDALVVMAQEFKKGRTLVDGHGNFGSIEGDGAAAMRYTEARLEKLTQEVFL 136

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +DL K+ VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+IP HNLGEVVD   
Sbjct: 137 EDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMATSIPPHNLGEVVDAVK 196

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A + N DI    LM  ++GPDFPTG +++ +  +   Y +G G + IRG   IEK  G R
Sbjct: 197 AYMKNNDISTRGLMRYLKGPDFPTGGIVVNKDDLVKIYESGTGKLRIRGRVEIEKLKGGR 256

Query: 264 EQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           +Q+V+TEIPY +   N    L  IA LV  K+  DI D+ ++S ++G R+V+ELKR A  
Sbjct: 257 QQLVITEIPYTMIGANIGKFLNDIATLVETKKTTDIVDISNQSSKEGIRIVLELKRDADV 316

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + + N LY+ T L+  F VNM+A+   +PE   L  I+   V F  EV  R+   LL K 
Sbjct: 317 ENLTNMLYKKTRLEDTFGVNMLAVADGRPETLGLKQIIAHHVDFVFEVNSRKYTTLLAKE 376

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +++  +  GL  A   +D ++ I+R S + +  ++ L         I + I     +S  
Sbjct: 377 QEKREIQEGLIKACDVIDLIIEILRGSKSRDQVKKCL------TDGITEGIKFKTKTSEK 430

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                T+  +E Q  AIL++RL +L GL  D +  E       I    DIL++   +  +
Sbjct: 431 AAK--TLKFTEKQAAAILDMRLYKLIGLEIDALMKEHEETMKNIAAYEDILNNYDSMAAV 488

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I  EL  +K E  + R+T I      + +E  +   ++   +   GY++ +  + Y   +
Sbjct: 489 IMGELDQIKKEYGSKRKTSIENAEEAVYEEKKMEETEVCFLMDRFGYMRLIDKNAYERNK 548

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                 S  V          F       +  F+  G ++  K   +P+   + +G    N
Sbjct: 549 DAAHAESRYV----------FTCMNTDKICIFTDTGKLHTVKAEDIPLVRFRDKGVPADN 598

Query: 621 ILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           + + +   E+I  + P  +  +S     V+F T++G  +  K  +F    R+  ++ KL 
Sbjct: 599 LGNYDSTSEQILYVAPLSQVAAST----VLFVTENGMCKLVKGDEFRASKRT-IVSTKLA 653

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D ++ V    + + ++  ++ G  +R   + I V   +N++GVRG+ L  G+  I  A
Sbjct: 654 EDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEISV-TKKNAMGVRGMKLT-GEDRIHHA 711

Query: 740 IVLHADADY 748
            +L +  +Y
Sbjct: 712 YLLESRQEY 720


>gi|312275248|gb|ADQ57974.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 278/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
 gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
          Length = 782

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 404/717 (56%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  ++K A+ISG+ MG +HPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLSSSGGFLKSAKISGDTMGDFHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ LG+
Sbjct: 91  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAEAMLEGLGE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG  QEP VL A +PN+L NG  GIAVGMATNIP HN+ E++D CV +I  
Sbjct: 151 DAVDFRDNYDGRLQEPSVLPATFPNILANGASGIAVGMATNIPPHNISELIDACVHLIKA 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           P+   D L++ + GPDFPTG  I+  +  I  AY TGRGS  +R    IE     + Q+V
Sbjct: 211 PNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDLGRGQWQVV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K++  +AD+RDES  +  R+++E K +    +V++  
Sbjct: 271 VTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDES-AEDIRIILEPKSKNVDPEVLMGL 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           ++R + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR+++ + K   R  
Sbjct: 330 MHRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMAKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   LM+ +W+    +       ++ Y   + G
Sbjct: 390 VLDGFIIAFLNLDRVIDIIRYDEDPKAA---LMRENWDREHPRAFT----EAEYVTPAAG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E ++L  E    +++L S       I ++L
Sbjct: 443 DGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGSEELQWKKITEQL 502

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +         RRT+  E   + D+  E  I RE + V  S +G+++ +   +  +
Sbjct: 503 RETKKQFGKNYEGGARRTQFAEAGEIEDVPLEAMIDREPITVVCSQMGWIRAMTGHIDLS 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+ +
Sbjct: 563 RE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGG--RGMGEPV 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +   +  PE         ++ A+  GN       D +   R GK  + 
Sbjct: 613 RLMVDLPNEVEIVDLFIHNPEGR-------LLVASDAGNGFVCAEKDIVAQTRGGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   DE   +      + + + ++ G+ + F I  +        V ++  ++A+G Q
Sbjct: 666 VKD-DERAKICIPVAGDHVAVVSENGKFLVFAIEEMPELTRGKGVRLQKYNMARGRQ 721


>gi|84796010|gb|ABC66093.1| DNA gyrase subunit A [Bacillus sp. DAU101]
          Length = 341

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/341 (57%), Positives = 265/341 (77%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG
Sbjct: 121 ILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T  
Sbjct: 181 VLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A 
Sbjct: 241 GKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAH 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           VILN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++
Sbjct: 301 VILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLEHYL 341


>gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
 gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
          Length = 775

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/609 (40%), Positives = 361/609 (59%), Gaps = 30/609 (4%)

Query: 15  GITSVSITDEMQNS----YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           G  S SI++ +  +    YL YA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  N  
Sbjct: 15  GPGSASISEPLSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGG 74

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+ +R  L++GQGNFG++DGD PAA RY
Sbjct: 75  FRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARY 134

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL+ L +D V+FR NYDG+ QEP VL A+ PN+L NG  GIAVGMATNI
Sbjct: 135 TEARMTAVAEALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNI 194

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIV 249
           P HNL E++  C+ +I  PD   + L+  ++GPDFPTG VI+  R  +   Y TG+G   
Sbjct: 195 PPHNLDELIAACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFR 254

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     + QIVVTEIPYQV K+ ++EK+AEL++ K++  +AD+RDES     R
Sbjct: 255 VRATHEIEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDES-ADDIR 313

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREE 367
           +V+E + +    DV++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+  R++
Sbjct: 314 IVLEPRSKTVDPDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQD 373

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V++RR+++ + +   R  VL G  IA  NLD V+ IIR+  +P+ A   LM+  W     
Sbjct: 374 VLMRRSRHRMAQIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAA---LMREDWG---- 426

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           +D +  + ++ Y     G   L+EVQ  AIL +RL  L  L   +++ E + L  E    
Sbjct: 427 QDFVRAMSEADYVSPKPGEGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGL 486

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVV 540
            D+L+  S   G I +EL  V+ +  +      RRT+  E   + ++  E  I RE + +
Sbjct: 487 EDLLAEESLQWGRIAEELREVRKKFGSRADGGARRTQFAEAGNIEEVSLEAMIEREPVTI 546

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+++ +   V  +Q         +  RD D         T   +L   S G VY 
Sbjct: 547 VCSQMGWIRAMKGHVDLSQE--------MKFRDGDGPRFAIHAETTDKLLILGSQGRVYT 598

Query: 601 EKVWRLPIG 609
                LP G
Sbjct: 599 LGANGLPGG 607


>gi|302386254|ref|YP_003822076.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196882|gb|ADL04453.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 755

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 261/734 (35%), Positives = 410/734 (55%), Gaps = 34/734 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 16  IIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE RL
Sbjct: 76  RIVGDTMGKYHPHGDSSIYETLVVMSQIFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARL 135

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TVDF PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP+HN
Sbjct: 136 EKFAEEVYLRDLDK-TVDFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPSHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D   A IDNPDI +  LME + GPDFPTG +I  ++ + + Y TG G I +RG  
Sbjct: 195 LGEVIDAVQAYIDNPDISICKLMEYLPGPDFPTGGIIANKSDLPSIYETGAGKIKLRGKI 254

Query: 255 HIE--KTSGDREQIVVTEIPYQ-----VNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +E  K   D++++V+TEIPY      +NK   L  +A+LV  K++ D+ D+ ++S+++G
Sbjct: 255 EVELGKRKADKDKLVITEIPYTMVGSGINK--FLVDVADLVESKKLSDVVDISNQSNKEG 312

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ +
Sbjct: 313 IRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIADGRPETLNLKGILKNYLDFQYK 372

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+  LM  + + S+I
Sbjct: 373 NATRKYQTLLEKELEKKEIKEGLIKACDIIDMIIAVLRGSKNLKDAKNCLM--TGDISNI 430

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              +   ++ +       T++ +E Q  AILE+RL +L GL    +  E      +I E 
Sbjct: 431 NFKVKGFEEDA------KTLHFTEKQATAILEMRLYKLIGLEILQLEKEYKETLAKIAEY 484

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             ILS+R  +  +IK +L  +K E  TPRRT I +G   + DE  I   ++   +   GY
Sbjct: 485 EKILSNRKFMDKVIKDDLDQIKKEYATPRRTLIEDGKEAVYDETAIPVSEVTFVMDRFGY 544

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  + Y   +         +  +  +V +         +  F++ G +++ K   +P
Sbjct: 545 CKILDKATYDRNKE-------TIETENPYVVNCL---NTDKICIFTNTGNLHQVKAQDIP 594

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+   +        +   E          +FATK   V+     +F  
Sbjct: 595 GGKLRDKGTPIDNLSKFDGTREEIVYLCHAE---GLKGRKFLFATKQALVKLVPGEEFET 651

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            NR+   A KL   D +L V+    + D++L T  G  +RF    I     +N+ GVRGI
Sbjct: 652 NNRT-VAATKLPDDDMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIPEMK-KNARGVRGI 709

Query: 728 SLAKGDQVISMAIV 741
            L +G+ + ++ ++
Sbjct: 710 KLTQGEALEAVHLI 723


>gi|229817461|ref|ZP_04447743.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
 gi|229785250|gb|EEP21364.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
          Length = 897

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 275/811 (33%), Positives = 415/811 (51%), Gaps = 129/811 (15%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV+    ++ +PD  L+ LM  + GPD+PTG +I+GR GI+ AYA+GRG++  R 
Sbjct: 197 HNLGEVVNAAKYLMAHPDATLEELMRYVPGPDWPTGGMIIGRDGIREAYASGRGTLSTRA 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
            +HIE  +  ++ IVVTE+PY V    +LE+I+E V+  ++  I+   D SDR  G R+V
Sbjct: 257 TTHIEHVTARKQAIVVTELPYMVGPEKVLERISEGVKNHKLEGISGAIDLSDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL ++T LQ  F++N VAL   +P    L  +L+ ++  R  V+ R
Sbjct: 317 IELKTGFDPHAVLVQLLKHTPLQDNFAMNNVALVNGRPHTMGLKEMLQVWIDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S N + A+  LM           + 
Sbjct: 377 RSEFRRTKALERLHLVEGLLLALIDIDEVIQVIRSSENADAAKTRLMA----------VF 426

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           DL D                +Q + IL+LRL RLT + R ++ +E + L   I+E   IL
Sbjct: 427 DLDD----------------IQAQYILDLRLRRLTKMSRIELESERDDLHKRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT-------------RIVEGL-------------- 524
           +S   L  ++  E+     E  TPRRT              + EG+              
Sbjct: 471 ASDKALDRVVVDEMDGAVAEYGTPRRTVLLDADAEGNLTPVVAEGMTGVSASALEAVKSA 530

Query: 525 ----------------------LDMEDEDCIVREDMVVTVSHLGYVKRV---PLSVYRAQ 559
                                 L++ED+ C       V +S  G + R     LS++R++
Sbjct: 531 NTVSSAAADVAAAKKAGEQSMALEIEDKPC------TVMMSATGLIARATPEALSMFRSR 584

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
              G+  +      +D +  +F  +T  +    +S G +   +V  LP+           
Sbjct: 585 SVSGERAT------DDQIVSIFRTTTRATYALITSAGRLVLAQVADLPV-------VPAT 631

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI------------- 666
           N LSL+ G +   ++   E        +VV A     V +    D               
Sbjct: 632 NTLSLSSGVKADELIGQTESTDPIRGEHVVTAIAMEPVSKKHSDDATDSDTTEPQALPPL 691

Query: 667 ----------QINRSGKIAM------KLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
                     + NR     M       L   DEI+       E+ ++  +     + F  
Sbjct: 692 AIGTRAGVVKRWNREAPTTMDSWSVIDLKDGDEIVFAAIARDEDRLVFISTDSSLLTFEA 751

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             +R   GR + G+ GI LA+G +V +  +V
Sbjct: 752 KNVRP-QGRTAGGMAGIKLAEGCKVAAFNVV 781


>gi|312275244|gb|ADQ57972.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/400 (53%), Positives = 278/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYRLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I++  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIEDEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|116090721|gb|ABJ55987.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 325

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/325 (59%), Positives = 259/325 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 181 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+
Sbjct: 241 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYK 300

Query: 330 YTSLQSLFSVNMVALNGYKPERFTL 354
            T+LQ+ F +N++AL   +P+   L
Sbjct: 301 QTALQTSFGINLLALVDGQPKVLNL 325


>gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
 gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
          Length = 768

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/594 (41%), Positives = 355/594 (59%), Gaps = 31/594 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LLD L +
Sbjct: 87  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAFAEALLDGLAE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG+ +EPVVL A +PN+L NG  GIAVGMATNIP HN+ E++D C+ +I +
Sbjct: 147 DAVDFRDNYDGTLREPVVLPASFPNLLANGSSGIAVGMATNIPPHNIAELIDACLHLIKS 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L++ I GPDFPTG VI+     I  AY TGRG+  +R    +E     + QIV
Sbjct: 207 PDARDDTLLQYIPGPDFPTGGVIVEPPESIAQAYLTGRGAFRLRCKWELEDLGRGQWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++E+IAEL++ +++  +AD+RDES     R+V+E + +    +V++  
Sbjct: 267 VTEIPYQVQKSKLIERIAELIQTRKVPILADVRDES-ADDVRLVLEPRSKNVDPEVLMGM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +YR + L+  FS+NM V ++G  P+  +L  +L+AF+ FR++V++RR+ + + K   R  
Sbjct: 326 MYRNSELEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRQQVLLRRSVHRMEKIDHRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD- 444
           VL GL IA  NLD V+ IIR+  +P+ A   LM+  W     + +   + ++ Y      
Sbjct: 386 VLEGLIIAFLNLDRVIDIIRYDEDPKAA---LMREDWG----RTVPRAMSEADYVPPPPT 438

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L+EVQ  AIL +RL  L  L   ++R E ++L  E     D+L   S     +  +
Sbjct: 439 AEAGLTEVQAEAILNMRLRSLRRLEEMELRAERDTLMAERAGLEDLLDDVSLQWAAVADQ 498

Query: 505 LLSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP--LSV 555
           L  VK           RRT+  E   + D+  E  I RE + V  S +G+++ +   L +
Sbjct: 499 LKEVKKTFGKTHPIGARRTQFAEAGSVEDVPLEAMIDREPITVVCSQMGWIRAMTGHLDL 558

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            R  +           +D D    +F   T   +L F S G  Y      LP G
Sbjct: 559 SRELK----------FKDGDGPRFMFHAETTDRILVFGSNGRFYTLSASNLPGG 602


>gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
          Length = 782

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 402/717 (56%), Gaps = 37/717 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  ++K A+ISG+ MG +HPH
Sbjct: 31  YLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSSGGFLKSAKISGDTMGDFHPH 90

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ LG+
Sbjct: 91  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAEAMLEGLGE 150

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG  QEP VL A +PN+L NG  GIAVGMATNIP HN+ E++D C+ +I  
Sbjct: 151 DAVDFRDNYDGRLQEPSVLPATFPNILANGSSGIAVGMATNIPPHNISELIDACIHLIKA 210

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           P+   D L++ + GPDFPTG  I+  +  I  AY TGRGS  +R    IE     + Q+V
Sbjct: 211 PNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDLGRGQWQVV 270

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K++  +AD+RDES  +  R+++E K +    +V++  
Sbjct: 271 VTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDES-AEDIRIILEPKSKNVDPEVLMGL 329

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +YR + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V+ RR+++ + K   R  
Sbjct: 330 MYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMAKIDHRLE 389

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  IA  NLD V+ IIR+  +P+ A   LM+ +W+    +       ++ Y   + G
Sbjct: 390 VLDGFIIAFLNLDRVIDIIRYDDDPKAA---LMRENWDREHPRAFT----EAEYVTPAAG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E ++L  E     ++L S       I ++L
Sbjct: 443 DGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLAELLDSEDLQWKKITEQL 502

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              K +         RRT+  E   + D+  E  I RE + V  S +G+++ +   +   
Sbjct: 503 RETKKQFGKDYEGGSRRTQFAEAGEVEDVPLEAMIDREPITVVCSQMGWIRAMTGHIDLN 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           +         +  +D D    +F   T   +L F S G  Y      LP G  +  G+ L
Sbjct: 563 RE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGG--RGMGEPL 612

Query: 619 INILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             ++ L N+ E +   +  PE         ++ A+  GN       + +   R GK  + 
Sbjct: 613 RLMVDLPNEVEIVDLFIHNPEGR-------LLVASDAGNGFVCAEKEIVAQTRGGKQVLN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +   DE   +      + + + ++ G+ + F I  +        V ++  ++A+G Q
Sbjct: 666 VKD-DERAKICIPVSGDHVAVVSENGKFLVFSIEEMPELTRGKGVRLQKYNMARGRQ 721


>gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
          Length = 767

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 248/611 (40%), Positives = 359/611 (58%), Gaps = 26/611 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +   
Sbjct: 7   DPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPT 66

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA 
Sbjct: 67  GGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAS 126

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +P++L NG  GIAVGMAT
Sbjct: 127 RYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGASGIAVGMAT 186

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           NIP HNL E+++GC+A+I +P I  +AL+ +I GPDFPTG VI+  +  I   Y TGRG+
Sbjct: 187 NIPPHNLDELIEGCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILEGYRTGRGA 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+RDES    
Sbjct: 247 FRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESA-DD 305

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFR 365
            R+V+E + R    ++++  L+R + L+  FS+NM V ++G  P+  +L  +L+AF+  R
Sbjct: 306 VRIVLEPRARTVDPEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEVLRAFLDHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV++RR+++ + K   R  VL GL +A  NLD V+ IIR+   P   +R LM  +W   
Sbjct: 366 REVLIRRSEHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEP---KRALMAETWG-- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +       +  Y     G   L+EVQ  AIL +RL  L  L   ++  E ++L  E  
Sbjct: 421 --RKFKRATSEKDYVGPGAGPGELTEVQAEAILNMRLRSLRRLEEMELLAERDALTAERA 478

Query: 486 ECLDILSSRSRLLGIIKQEL-----LSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDM 538
           +  D++ S  R    I  +L     L  K  +   RRT+  E   + ++  E  I RE +
Sbjct: 479 DLADLVGSEPRQWERIGADLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLEAMIEREPI 538

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V  S +G++        RA +      S V  +D D    +F   T   +L   S G  
Sbjct: 539 TVICSKMGWI--------RAMKGHQPLGSEVKFKDGDGPRFMFHAETTDRLLLVGSNGRF 590

Query: 599 YKEKVWRLPIG 609
           Y      LP G
Sbjct: 591 YTLTGASLPGG 601


>gi|312275268|gb|ADQ57984.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/400 (52%), Positives = 278/400 (69%), Gaps = 8/400 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG 
Sbjct: 62  IDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGS 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++
Sbjct: 122 SGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIED 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KR+  I+ +
Sbjct: 182 AYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRVEGISSI 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++
Sbjct: 242 EDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIE 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR     + AR  L+ 
Sbjct: 302 AFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNFKTADEAREGLLD 361

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLSE 451
           R W+  ++  +++         +D +   G  DG  YLSE
Sbjct: 362 RPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003]
 gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 767

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/555 (43%), Positives = 341/555 (61%), Gaps = 32/555 (5%)

Query: 6   ISSDEEEEKGITSV-SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +SSD+E     T    ++  +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ 
Sbjct: 16  MSSDDETPTSATHAEPLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELK 75

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGN+G++DGD 
Sbjct: 76  LSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGNIDGDG 135

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL   A  LL+ L +D+VDFRPNYDG+  EPVVL A +PN+L NG  GIAV
Sbjct: 136 PAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGASGIAV 195

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYAT 243
           GMATN+P HNL E+VDGC+A+I +P I+   L+++I GPDFPTG VI+  +  I  AY T
Sbjct: 196 GMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANILEAYRT 255

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG+  +R    +E     + QIVVTEIPYQV KA ++E++AEL+  K++  +AD+RDES
Sbjct: 256 GRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALADVRDES 315

Query: 304 DRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAF 361
             +  R+V+E + R      ++  L+R + L+  FS+NM V ++G  P+  +L  +L+AF
Sbjct: 316 A-EDVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEVLRAF 374

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EV+ RR+++ L K  +R  VL G  IA  NLD V+ IIR   +P+ A   LM  +
Sbjct: 375 LDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAA---LMAEN 431

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A                  +   ++L+EVQ  AIL +RL  L  L   ++R E + L 
Sbjct: 432 WAAE-----------------AGAVVHLTEVQAEAILNMRLRSLRRLEEMELRAERDDLL 474

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDEDCIV 534
            E      +L+S       I  EL  ++           RRT   E   + ++  E  I 
Sbjct: 475 KERAGLEALLASEVAQWAQISSELEDLRKTWGKATKIGARRTDFAEAGEVEEVPIEAMIE 534

Query: 535 REDMVVTVSHLGYVK 549
           RE + V +S +G+V+
Sbjct: 535 REPITVILSKMGWVR 549


>gi|119390532|pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390533|pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390534|pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390535|pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|224036402|pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036403|pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036410|pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036411|pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118792|pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118793|pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789386|pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789387|pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789394|pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789395|pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789470|pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789471|pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 496

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/502 (42%), Positives = 317/502 (63%), Gaps = 26/502 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 3   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 63  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++           
Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456

Query: 495 SRLLGIIKQELLSVKDELDTPR 516
             +  ++K+EL  VK +  TPR
Sbjct: 457 RTMYNLMKKELREVKKKFATPR 478


>gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
 gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
          Length = 754

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/680 (37%), Positives = 382/680 (56%), Gaps = 55/680 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +E+++ YL YA++ I+ R++PD+RDGLKPVHRRILF M  + ++ N  Y K A
Sbjct: 8   IDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPNSPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A YDA+ R+AQ++++R  L++GQGNFG++DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+DL  DTVDF P YDGS +EPVVL AR+PN+L NG  GIAVGM+TN+P HN+
Sbjct: 128 TSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMSTNVPPHNV 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK-NAYATGRGSIVIRGVS 254
           GE++D C+ +I  P+  ++ LM+ +  PDFPTG +++     +   Y+ GRGS+ +R   
Sbjct: 188 GEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRGSLRLRARW 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E       QIVVTEIPYQV K+ ++E+IA+LV +++   + ++RDESD +  R+V+E 
Sbjct: 248 AVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESD-ENLRIVLEP 306

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           + R    ++I++ L++++ L+S  S N+ V + G++PE   L GIL+ ++  R  V  RR
Sbjct: 307 RARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDHRFVVHTRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             Y L K R+R H+L    I   N+DEV+ II+ + +P      LM R            
Sbjct: 367 ASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPV---LMAR------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L E+Q  AIL +RL  L  L    IR E+  L         +L+
Sbjct: 412 --------------FSLDEIQAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550
               +   I+ EL + + E    RRT I   + D+    ED + +E + V +S +G+VK 
Sbjct: 458 DDKIMWKAIRDELKATRKEFADVRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWVK- 516

Query: 551 VPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                     +G    + V+  + +D +   F   T+ SV F S  G ++      LP G
Sbjct: 517 --------ANKGHDVNTEVLRFKGDDLLLRSFPCYTNQSVSFISQSGKLFTILASNLPAG 568

Query: 610 SPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L ++  L+ G+R+   +P  PE E        +  T+ G   R K  D I  
Sbjct: 569 --KGFGEPLTSMFDLDGGDRVLWALPVDPEQE-------YLLITRLGQGFRVKGVDLIAN 619

Query: 669 NRSGKIAMKLDSRDEILSVE 688
            R GK  + L S D+ L + 
Sbjct: 620 QRKGKQLITLKSGDQPLHLH 639


>gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 785

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 267/750 (35%), Positives = 410/750 (54%), Gaps = 66/750 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNK 69
           +E   I  VS++DE +  YL YA +VI  RA+PD+RDGLKPV RRIL+ M   + +  + 
Sbjct: 14  DETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVMYHDLRLTADS 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  KCA+I+G+  G YHPHG+A++YDAL R+AQD++LR  LI+GQGNFGS+ G PPAA R
Sbjct: 74  KPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGSIIGLPPAAAR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L   A  L+ +L   TV+ R NYDG  QEPVVL +R+P++LVNG  GIAVGMAT+
Sbjct: 134 YTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGTQGIAVGMATS 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSI 248
           IP HNL EVV  C+ +IDNPD  +  LM+ ++ PDFP G  ++  R  ++N Y TGRGSI
Sbjct: 194 IPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELRNTYETGRGSI 253

Query: 249 VIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +RG    +K     +R ++V+T IPY V    ++  +  +   K++  +  + DES+ +
Sbjct: 254 KVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQLVTVADESNEE 313

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKA 360
            G R+V+E+K    A+ ++  LY++T+L+  F+ N   L         P +  L  +L+ 
Sbjct: 314 LGMRLVLEVKHENDAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPAQCNLKEMLQH 373

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FR EVV +R ++LL +   R H+L G  I  + LD+ +R+IR S     A ++LM+ 
Sbjct: 374 FLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGKADAAQKLMK- 432

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+QT AILE+ L R++ L  D I  EL   
Sbjct: 433 -------------------------AFPLDEIQTDAILEMALYRISELEIDRIIEELKEK 467

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDM 538
             E +    +L+S +++  +I  EL  +       RRT +   E + + +    IV+E+ 
Sbjct: 468 RAEAERLRKLLASETKMWRLIADELGELGKTYGNKRRTGLGSSEEIAEFDPSAYIVKENT 527

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV----MRDEDFVTDLFIVSTHTSVLFFSS 594
            V ++  G++KRV             GR   V    +R+ D V ++   ST   ++FF+ 
Sbjct: 528 NVVLTSDGWIKRV-------------GRIQSVDKMRVREGDTVINVLPASTLDQIVFFAD 574

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGER----ITTIMPF-PEDESSWNN--LY 647
            G  Y   + ++P  S    G+ L   + L  G +    ITT   F PED+S   +   Y
Sbjct: 575 DGTAYTLPIDQIPASS--GYGEPLAKHIKLADGAKIVHGITTDPRFTPEDDSDEESPLPY 632

Query: 648 VVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           ++ AT+ G V     S F     + G+   +L   D+++ V+   +   + L T+  + +
Sbjct: 633 LLIATEMGQVMAISFSSFRPPSTKVGRKYCRLAKGDKVVFVDLIREHYTMFLATEQARVI 692

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            F ++ + + AG    GV+GI LA+GD V+
Sbjct: 693 HFELAEVPLLAGPGR-GVKGIKLAEGDSVL 721


>gi|291457735|ref|ZP_06597125.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
 gi|291380788|gb|EFE88306.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
          Length = 906

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/508 (43%), Positives = 320/508 (62%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ +PD  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM                
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLM---------------- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 424 ----------AVFDLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+    D+  +PRRT +++
Sbjct: 474 EALDHVVTSEMDEAVDKWGSPRRTVLLD 501


>gi|326773486|ref|ZP_08232769.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326636716|gb|EGE37619.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 847

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 281/771 (36%), Positives = 410/771 (53%), Gaps = 87/771 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +VK +
Sbjct: 17  IVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSS 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 77  RVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 136 AASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY TGRG  + R  +H
Sbjct: 196 VEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIVGLDGIREAYRTGRGKFLTRATAH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +DR+ G R+VI +
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDVADLTDRKHGTRLVISV 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLY++T L+  F +N V+L   +P    L  +L+ FV  R  VV RRT+
Sbjct: 316 KNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLEVFVRHRLTVVTRRTR 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ               
Sbjct: 376 FRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ--------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q   ILEL+L RLT     ++  E + L  EI+    IL+  
Sbjct: 421 -----------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILADD 469

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L  ++ +EL +V ++  TPRRT ++E   +              + S  G        
Sbjct: 470 VLLRRVVSRELAAVAEQFGTPRRTVLLEASGERVTSSAAAETADDASASGRG-------- 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK----EKVWRLPIGS 610
              A+R GG  +   +M     V     V      +  S+ G V +    E V R     
Sbjct: 522 ---AKRAGGAAQPMTLMPSASPVP--LTVPDDPCRVLLSATGLVARTAGTEPVARTGGRQ 576

Query: 611 PQ----------ARGK----------ALINILSLNQGERI---------TTIMPF----P 637
           P           ARG+           L++++S  +  R          T +       P
Sbjct: 577 PHDALTSQVATTARGRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEP 636

Query: 638 EDE-------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           E++        S +N  +V AT  G ++R K  D  +   S ++ + L   D ++  +T 
Sbjct: 637 EEKVVGLVPVGSADNPPIVLATAEGVIKRVKPGDEPRNAESWEV-ISLSEGDRVVFADTA 695

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              + + L T   Q +RF  + +R   GR + G+ GISL +G +VI+ A V
Sbjct: 696 ADTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARVIAGAAV 745


>gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
 gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
          Length = 807

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 250/627 (39%), Positives = 357/627 (56%), Gaps = 58/627 (9%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  ++K A+ISG+ MG +HPH
Sbjct: 27  YLTYALSTIMNRALPDARDGLKPVHRRILYAMRRLRLSSSGGFLKSAKISGDTMGDFHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LL+ L +
Sbjct: 87  GDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGDNPAASRYTEARMTIMAEALLEGLDE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D+VDFRPNYDG  +EP VL A YPN+L NG  GIAVGMATNIP HN+GE++D C+ +I  
Sbjct: 147 DSVDFRPNYDGRLEEPTVLPASYPNLLANGASGIAVGMATNIPPHNIGELIDACLHLIKT 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   + L+  + GPDFPTG VI+  R  I  AY TGRGSI +R    +E       Q V
Sbjct: 207 PDARDETLLNYVPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRAKWEVEDLGRGMWQAV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++E++AEL++ K++  +AD+RDES  +  R+V+E K +    DV++N 
Sbjct: 267 VTEIPYQVQKSKLVERLAELIQTKKVPILADIRDES-AEDVRMVLEPKTKNVDPDVLMNM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           L+R + L+  FS+NM V ++G  P+  +L  +L+AF+ FR +V+ RR+++ + K  +R  
Sbjct: 326 LFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLRAFLDFRRDVLCRRSRHRMAKIDNRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI---- 441
           VL GL IA  NLD V+ IIR+  +P+ A   LM   W+      +    DDS Y      
Sbjct: 386 VLEGLIIAFLNLDRVIDIIRYDDDPKAA---LMYEDWSKPHQATISRATDDSDYVSPLLG 442

Query: 442 -----------------------GSDGTMY---------LSEVQTRAILELRLARLTGLG 469
                                  G  GT+          LS+VQ  AIL +RL  L  L 
Sbjct: 443 VDVKALELRPDPEAVARGVLADEGGPGTIPQRFGGRSEGLSDVQAEAILNMRLRSLRRLE 502

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDM 527
             ++ NE + L  E     D+L+S       I ++L  VK     D  R  R+       
Sbjct: 503 ELELVNERDKLMEERAGLEDLLASDELQWKRISEQLREVKKSFAKDLDRGARLTSFAEAG 562

Query: 528 EDEDC-----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
           E E+      I RE + V  S +G+++ +   +   +         +  +D D    +F 
Sbjct: 563 EAEEVPLEAMIEREPITVVCSQMGWIRAMTGHIDLNRE--------LKFKDGDGPRFVFH 614

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             T   +L F + G  Y      LP G
Sbjct: 615 AETTDKLLVFGTNGRFYTLAAASLPGG 641


>gi|50954717|ref|YP_062005.1| DNA topoisomerase IV subunit A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951199|gb|AAT88900.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 823

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 282/755 (37%), Positives = 412/755 (54%), Gaps = 68/755 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +T EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +VK A
Sbjct: 14  IEDVDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMTEMGLRPDRGHVKSA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R++GEVMGK HPHG++AIY+AL RMAQD++LR+ LI+G GNFGS+D D PAA RYTE RL
Sbjct: 74  RVTGEVMGKLHPHGDSAIYEALVRMAQDFTLRVPLIDGHGNFGSLD-DGPAAARYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  L  DL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 133 AAAALALTGDLDEDVVDFVPNYDNQLMQPDVLPAAFPNLLVNGASGIAVGMATNMAPHNL 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++DNPD  LD LM  I GPD P+G  I G +G+++AYATGRGS  +R    
Sbjct: 193 VEVVGAARHLLDNPDATLDDLMAYIPGPDLPSGGAIAGLSGVRDAYATGRGSFRMRAKVG 252

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  +  +VVTE+PY V    ++EKI + V  K++  I+D+ D SDR+ G R++I +
Sbjct: 253 IEPITARKNGLVVTELPYGVGPERVIEKIKDGVSAKKLKGISDVTDLSDRKHGLRLIIGV 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G S + +L QLYR+T L+  FS+N VAL    P+   L  +L  ++  R  VV RR++
Sbjct: 313 KTGFSPEAVLEQLYRHTPLEEGFSINSVALVEGGPQTLGLRELLSVYLGHRIRVVTRRSE 372

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L + ++R H++ GL +A+ ++DE +++IR S + + AR  LMQ               
Sbjct: 373 FRLARRKERLHLVEGLLVAILDIDEAIQVIRSSDDTDQARSRLMQ--------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS +Q   ILELRL RLT   R ++  E + L  EI E   +L+SR
Sbjct: 418 -----------VFDLSTLQADYILELRLRRLTRFSRIELEAERDQLRAEIAELEALLASR 466

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE---------------GLLDMEDEDCIVREDMV 539
           S +  ++  EL  V     TPRRT + E                 L++ D  C       
Sbjct: 467 SLINALVSDELEQVAATFGTPRRTLLTEAKPSIASTSRGKAAAAQLEVADVPC------R 520

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--DEDFVTDLFIVSTHTSVLFFSSLGF 597
           V +S  G + RV       ++  G  R    +R    D +      ++H+ +   ++ G 
Sbjct: 521 VFLSTTGRILRVDAGT---EQDTGLDRIQPPVRRSKHDAILSRLDTTSHSEIGAVTNRGR 577

Query: 598 VYKEKVWRLPIGSPQA----RGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFAT 652
           + +     LP   P +     G  + + L+L ++ ERI  ++     +       +   T
Sbjct: 578 LLRFSPVDLPAAPPNSIQLGAGVKVGDYLALADKKERILALVSLDSPKP------IALGT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G V+R    D+        I +K  + DE++        ++++      Q +RFP ++
Sbjct: 632 RQGVVKRVAPGDWASKPEFEIIGLK--AGDEVVGAAHTEDTDELVFVASDSQLLRFPAAS 689

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +R   GR + G+ GI+LA G +VI    V   + D
Sbjct: 690 VRP-QGRAAGGMAGIALAPGARVIFFGSVSATEKD 723


>gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
 gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
          Length = 767

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/595 (40%), Positives = 355/595 (59%), Gaps = 34/595 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +     + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRILFAMRELKLSPTSAFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE RL   A  L++ L +
Sbjct: 87  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAIAEALMEGLAE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFRPNYDG+ +EPVV+ A +P++L NG  GIAVGMATNIP HNL E++DGC+A+I +
Sbjct: 147 NAVDFRPNYDGTLEEPVVMPAAFPHLLANGSSGIAVGMATNIPPHNLHELIDGCLALIKH 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD+   AL+++I GPDFPTG VI+  R  I ++Y TGRGS  +R    +E     + QIV
Sbjct: 207 PDLPDAALVDLIPGPDFPTGGVIVEPRASILDSYRTGRGSFRLRARWAVEDLGRGQWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++E++AEL++ K+   +AD+RDES     R+++E + R    D+++  
Sbjct: 267 VTEIPYQVQKSKLIERLAELIQTKKTPLLADVRDESTAD-VRLILEPRVRTVDPDMLMGT 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           L+R + L+  FS+NM V ++G  P+  +L  +L+AF+  + EV+ RR+++ L K   R  
Sbjct: 326 LFRNSDLELRFSLNMNVLIDGRTPKVCSLREVLRAFLDHKREVLQRRSRHRLEKIDHRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L G  I   NLD V+ IIR+  +P   +R LM   W     +       +  Y   + G
Sbjct: 386 ILEGFIITFLNLDRVIDIIRYDADP---KRALMAEDWGKKHRR----ATSEKDYVPPAPG 438

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+EVQ  AIL +RL  L  L   ++  E ++L +E     D+L+S +     I ++L
Sbjct: 439 EGELTEVQAEAILNMRLRSLRRLEELELIAERDALMVERAGLEDLLASDALQWKRIGKDL 498

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK----RVPLS 554
             V+           RR+   E     ++  E  I RE + V  S +G+++     V L 
Sbjct: 499 AEVQKTFGKASKGGARRSTFAEAGEAEEVPYEAMIEREPITVICSKMGWIRAMKGHVALD 558

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             +  + G +GR             LF   T   ++   S G VY      LP G
Sbjct: 559 SEQKFKDGDEGRF------------LFHAETTDRIILIGSNGRVYTLLGANLPGG 601


>gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
 gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
          Length = 780

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/614 (40%), Positives = 361/614 (58%), Gaps = 26/614 (4%)

Query: 10  EEEEKGITSVSITDEMQNS----YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ + G+    +T+ ++ +    YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +
Sbjct: 3   DDSDTGLGPNDVTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRL 62

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD P
Sbjct: 63  SPSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 122

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  LL+ L +D+VDFR NYDG   EP VL A +PN+L NG  GIAVG
Sbjct: 123 AASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSSGIAVG 182

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATG 244
           MATNIP HNL E++D C+ +I  PD   D L+  I GPDFPTG  I+     I  AY TG
Sbjct: 183 MATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAEAYRTG 242

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E       QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+RDES 
Sbjct: 243 RGSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADVRDES- 301

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFV 362
               RVV+E + +    +V++  L+R + L++ FS+NM V ++G  P+  +L  +L+AF+
Sbjct: 302 ADDIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+VRR+KY L K   R  VL G  IA  +LD V+ IIR+  +P+ A   LM   W
Sbjct: 362 EHRRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKA---LMIEDW 418

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
               ++   +    S    G+D  + LSEVQ  AIL +RL  L  L   ++  E ++L  
Sbjct: 419 AQDHVRATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAERDALME 478

Query: 483 EIKECLDILSSRSRLLGIIKQELLSV-----KDELDTPRRTRIVEG--LLDMEDEDCIVR 535
           E     D+L S       I ++L        +D     RRT+  E   ++++  E  I R
Sbjct: 479 ERAGIEDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAEAAEVVEVPLEAMIER 538

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V  S +G+V+ +   +   +         +  +D D    +F   T   +L F + 
Sbjct: 539 EPITVVCSQMGWVRAMTGHIDLTRE--------LKFKDGDGPRFIFHAETTDKLLVFGAN 590

Query: 596 GFVYKEKVWRLPIG 609
           G  Y      LP G
Sbjct: 591 GRFYTVGAANLPGG 604


>gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 856

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 274/752 (36%), Positives = 414/752 (55%), Gaps = 64/752 (8%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           + YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +    ++ K ++ISG+VMG YH
Sbjct: 64  DRYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNSGGRFRKSSKISGDVMGNYH 123

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LL+ L
Sbjct: 124 PHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTIVAEALLEGL 183

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            +D VDFR NYDG+ +EPVVL A +P++L NG  GIAVGMATNIP HN+ E+VD C+ +I
Sbjct: 184 DEDAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMATNIPPHNISELVDACLHLI 243

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
             PD   D L+  I GPDFPTG VI+  R  I  AY TGRGSI +R    +E     + Q
Sbjct: 244 KTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRSKWEVEDLGRGQWQ 303

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVIL 324
           I+VTEIPYQV K+ ++EK+AE+++ K++  +AD+RDES     R+V+E K R    ++++
Sbjct: 304 IIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDES-ADDVRIVLEPKTRNVEPEMLM 362

Query: 325 NQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             L+R + L+  FS+NM V ++G  P+  +L  +L+AF+ FR EV++RR+++ + K   R
Sbjct: 363 GLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLRAFLDFRREVLIRRSQHRMEKIDHR 422

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETA---------RRELMQRSWNASDIKDLIDLI 434
             VL G  IA  NLD V+ IIR+  +P+ A          ++ + R+ N  D    +  I
Sbjct: 423 LEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYEDWSRPHQDTIARATNEHDYVSPLAGI 482

Query: 435 DDSSYTIGSDGTMY------------------------LSEVQTRAILELRLARLTGLGR 470
           D +S  +  D T                          LS+VQ  AIL +RL  L  L  
Sbjct: 483 DVASLELREDETATAPEIITDNTGSGATPKRFVGRSEGLSDVQADAILNMRLRSLRRLEE 542

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV-----KDELDTPRRTRIVEG-- 523
            ++  E ++L  E     D+L S     G I  EL        KD +   RRT+  E   
Sbjct: 543 LELIRERDALMEERAGLEDLLDSEDLQWGRIGDELKDAKKKFGKDYVAGARRTQFAEAAE 602

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           + D+  E  I RE + +  S +G+++   +S +    R  K       +D D     F  
Sbjct: 603 VPDVPLEAMIEREPVTIVCSQMGWIRA--MSGHVDLTRDFK------FKDGDGPRFAFHA 654

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESS 642
            T   ++ F++ G  Y      LP G  +  G+ L  ++ L N  E I   +  P+ +  
Sbjct: 655 ETTDKIIVFAANGRFYTLGASNLPGG--RGMGEPLRLMVDLPNDVEIIDMFVHAPDRK-- 710

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                ++ A+K GN      +D +   ++GK    L+  D++  +      + + + ++ 
Sbjct: 711 -----LIVASKGGNGFIVPEADVVAQTKNGK--QVLNVSDDVAKLVKPVAGDHVAVVSEN 763

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + + FPI+ +        V ++    A+G Q
Sbjct: 764 RKLLVFPIAELPEMGRGKGVRLQKYGSARGRQ 795


>gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 899

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/727 (34%), Positives = 413/727 (56%), Gaps = 49/727 (6%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K Y K AR+ GEV+GKYH
Sbjct: 18  NRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYH 77

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RYTE RL K ++ LL+DL
Sbjct: 78  PHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKISNLLLEDL 137

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+P HNL E++D  + +I
Sbjct: 138 EKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDATIDII 197

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I    H EK +     I
Sbjct: 198 KNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSKWHQEKNN-----I 252

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+VIEL   A+ + +   
Sbjct: 253 VIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKANLETVRKF 312

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L++ T L   ++ N + +   +P++  LI I+KA+++  +EV ++RT++ LNK   R  +
Sbjct: 313 LFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKTNLRLEI 372

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL  A++ LDEV+++IR S N                     ID I++   +      
Sbjct: 373 VKGLIKALSILDEVIKVIRKSENR--------------------IDAINNLVISFN---- 408

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              +  Q+ AI+++RL RLT    + +  E   L  +IK+  +IL+    L   I   L 
Sbjct: 409 --FTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLE 466

Query: 507 SVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
            VK +    R+++ VE L   LD++ ++ I+ +++ + +S  GY+K +  ++        
Sbjct: 467 EVKKQFGIKRKSQ-VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSS 525

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
            G+     +  D      + S    ++  S     Y   ++++     + +G  + ++ +
Sbjct: 526 FGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVAT 580

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSR 681
               E I   +   E  +S  +L +V  TK+G ++R ++SD      N+S KI MK+   
Sbjct: 581 TQPNETIINALVIKEFINSTQHLLLV--TKNGLIKRTQISDLETKIFNKSFKI-MKISDD 637

Query: 682 DEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           D ++  +  + +     + TK G  VR+ I  I +     S GV+  +L K DQ+IS A+
Sbjct: 638 DSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPI-QSTISKGVKAANL-KDDQIIS-AL 694

Query: 741 VLHADAD 747
            L  + D
Sbjct: 695 SLQTNKD 701


>gi|1321899|emb|CAA63254.1| gyrA [Mycobacterium smegmatis]
          Length = 469

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/409 (50%), Positives = 280/409 (68%), Gaps = 5/409 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     ++N + D     +A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +I
Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALI 409


>gi|295395841|ref|ZP_06806029.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971376|gb|EFG47263.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 854

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 271/749 (36%), Positives = 396/749 (52%), Gaps = 78/749 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V ++ EM++S+L YA +VI  RA+PD RDGLKPV RRI++ M  MG+  ++ +VK +
Sbjct: 5   IVDVDVSQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMGDMGLRPDRPHVKSS 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK HPH + AIYDAL R++QD+ +R+ L++G GNFG++D D PAA RYTE RL
Sbjct: 65  RIVGDVMGKLHPHSDVAIYDALVRLSQDFVMRVPLVDGHGNFGTLD-DGPAAPRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  ++  L +D VDF PNYD S  +P VL + +PN+LVNG  GIAVGMATN+  HN 
Sbjct: 124 DDAALTMIAGLDEDVVDFVPNYDNSLTQPEVLPSAFPNLLVNGASGIAVGMATNMAPHNP 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     +I+NP   +  LM  + GPD PTG  I+G   I+ AY TGRG+   R    
Sbjct: 184 GEVIAAARHLIENPQATVSELMRYVPGPDLPTGGRIIGLDSIREAYETGRGTFRTRATVK 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
            E  +  R+ IVVTE+PY V    ++EK+ + V+ KR+  IA + D SDR+ G R+VI +
Sbjct: 244 FENITARRKGIVVTELPYLVGPERVIEKVKDQVQAKRLTGIASIDDYSDRKHGLRLVIGI 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L +LYR T ++  F +N V L   +P    L  +L+ FV  R  +  RRT 
Sbjct: 304 KNGFNPEAVLEELYRLTPMEDSFGINNVCLVEGQPRTLGLKPLLEVFVDHRISITRRRTV 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+DR H++ GL IA+ ++DEVV++IR S +   AR  LM          D+ D  
Sbjct: 364 FQLGKAKDRLHLVEGLLIAILDIDEVVQLIRSSDDATQARTRLM----------DVFD-- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q   IL+L+L RLT   R ++  E + L   I+    IL   
Sbjct: 412 --------------LSEIQATYILDLQLRRLTKFSRIELEAERDELKSRIEYLQGILDDD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG------------LLDMEDEDCIVREDMVVTV 542
            +L  ++  EL    D +D+PRRT +VEG             L + DE C V   +  T 
Sbjct: 458 DKLRALVSDELQETSDRIDSPRRTVLVEGNLKELRAAKKGTKLTVADEPCWV---LFSTS 514

Query: 543 SHLGYVK-RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
             L     + PLS         +GR        D +      ++ +++   ++ G V   
Sbjct: 515 QRLARTTGQEPLSA--------QGRRA----SHDALVSQIATTSRSTIAAVTNTGRVVGV 562

Query: 602 KVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP   PQA       G  +    +L + E++  ++  PE E        V  TK G
Sbjct: 563 DVVSLPQLPPQAARPTVAGGVRVSEYFTLEKNEKVIGLID-PERE-------CVVGTKQG 614

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISA 712
            ++R   +D     + G   + L  +DEI+ +   E     + + +T+   Q + F +  
Sbjct: 615 VIKRINGNDQF---KDGSTLINLKPKDEIVGLAQPEDLNTHSAVFITSN-AQLLAFDLEG 670

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +R   G  + GV GI +A    VI    V
Sbjct: 671 VRA-QGYAASGVAGIRVASDAHVIGFYAV 698


>gi|56159842|gb|AAV80732.1| gyrase subunit A [Bacillus subtilis]
          Length = 320

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/319 (59%), Positives = 257/319 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI
Sbjct: 121 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 241 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPE 350
           +LQ+ F +N++AL   +P+
Sbjct: 301 ALQTSFGINLLALVDGQPK 319


>gi|56159832|gb|AAV80727.1| gyrase subunit A [Bacillus subtilis]
          Length = 321

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/319 (59%), Positives = 257/319 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI
Sbjct: 122 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 181

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 182 TIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 241

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 242 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 301

Query: 332 SLQSLFSVNMVALNGYKPE 350
           +LQ+ F +N++AL   +P+
Sbjct: 302 ALQTSFGINLLALVDGQPK 320


>gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
          Length = 767

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/614 (41%), Positives = 360/614 (58%), Gaps = 32/614 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +   
Sbjct: 7   DPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPT 66

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA 
Sbjct: 67  GGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAS 126

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  GIAVGMAT
Sbjct: 127 RYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMAT 186

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           NIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+  +  I  AY TGRG+
Sbjct: 187 NIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGA 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+RDES    
Sbjct: 247 FRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDES-ADD 305

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFR 365
            R+V+E + R    ++++  L+R + L+  FS+NM V ++G  P   +L  +L+AF+  R
Sbjct: 306 VRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P   +R LM  SW   
Sbjct: 366 RDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADP---KRALMAESWG-- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E ++L  E +
Sbjct: 421 --RKFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAE-R 477

Query: 486 ECLDILSSRSRL--------LGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVR 535
             L+ L    RL        LG I++  L  K  +   RRT+  E   + ++  E  I R
Sbjct: 478 ADLEALIGSERLQWDRIGHDLGEIRK--LFGKWTVAGARRTQFAEAGEVEEVPLEAMIER 535

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V  S +G++        RA +      +    +D D    LF   T   +L   S 
Sbjct: 536 EPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSN 587

Query: 596 GFVYKEKVWRLPIG 609
           G  Y      LP G
Sbjct: 588 GRFYTLTGASLPGG 601


>gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
 gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
          Length = 768

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 243/592 (41%), Positives = 353/592 (59%), Gaps = 27/592 (4%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRI++ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRIIYAMRELRLGSTGGFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 87  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEAMLEGLAE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFR NYDG+  EPVVL A +PN+L NG  GIAVGMATNIP HN+ E+VD C+ +I  
Sbjct: 147 NAVDFRDNYDGTLTEPVVLPASFPNLLANGSSGIAVGMATNIPPHNIPELVDACLHLIKV 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  + GPDFPTG +I+  R  I  AY TGRG+  +R    +E     + QIV
Sbjct: 207 PDARDDTLLNYVPGPDFPTGGIIVEPRENIAEAYRTGRGAFRLRCRYEVEDLGRGQWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EK+AE+++ K++  +AD+RDES     RV++E + +    +V++  
Sbjct: 267 VTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRDES-ADDIRVILEPRSKNVDPEVLMGM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR T L+  FS+NM V ++G  P+  ++  +L+AF+ FR EV+ RR+ + + K   R  
Sbjct: 326 LYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDFRREVLQRRSVHRMEKIDHRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL GL +A  NLD V+ IIR+  +P+ A   LM+  W     +D +  +D++ Y   + G
Sbjct: 386 VLEGLIVAFLNLDRVIDIIRYDEDPKAA---LMREDWG----RDFVRAMDEADYVPPAPG 438

Query: 446 TM-YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L+EVQ  A+L +RL  L  L    +  E ++L  E     D+L S       I  +
Sbjct: 439 APDGLTEVQAEAVLNMRLRALRRLEEMALVKERDALMEERAGLEDLLESEDLQWAAISDQ 498

Query: 505 LLSV-----KDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L        KD     RRT   E   + ++  E  I RE + V  S +G+++ +   +  
Sbjct: 499 LREAKKTFGKDYEGGARRTTFAEAGEVEEVPIEAMIEREPITVVCSQMGWIRAMTGHI-- 556

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  GR  +  +D D  + +F   T   +L F+S G  Y      LP G
Sbjct: 557 -----DLGRE-LKFKDGDGPSFMFHAETTDRLLVFASTGRFYTISAANLPGG 602


>gi|229916009|ref|YP_002884655.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
 gi|229467438|gb|ACQ69210.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
          Length = 801

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 259/732 (35%), Positives = 414/732 (56%), Gaps = 57/732 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+   + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K Y K A
Sbjct: 7   ILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHHEGNTNDKPYRKSA 66

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G V+G YHPHG++++Y+A+ R++QDW LR  LI+  GN GS+DGDP AA RYTE RL
Sbjct: 67  KTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRYPLIDMHGNNGSMDGDPAAAMRYTEARL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L  + K+TVD+ PN+D S +EP+VL +  PN+L+NG  GI+ G AT IP HNL
Sbjct: 127 SKIAGVMLTSIAKNTVDYTPNFDDSTEEPLVLPSLLPNLLMNGTTGISAGYATEIPPHNL 186

Query: 196 GEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV++  +A +    DI  DAL E + GPDFPTG  ++G+ GI  A+ TG+G ++IR  S
Sbjct: 187 TEVLNLAIARLKGQVDIAKDAL-EYVTGPDFPTGGTVMGKDGILKAFETGKGKVIIRAKS 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G REQI +TE+PY+VNKA +++K+ EL  +K++  +A++RDE+DR G RVVIEL
Sbjct: 246 EIEQLKGGREQITITELPYEVNKANLVKKMEELRLDKKVEGVAEVRDETDRTGLRVVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A A+ +L+   ++T LQ  ++ NMV++    P++  +I I+ A++   EEVV RRT 
Sbjct: 306 KKEADAEGVLHFFLKHTDLQLAYNYNMVSIVNRTPKQMGIIPIIDAYLKHVEEVVTRRTT 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +A+ RA ++  L  A++ LDE + +IR + +   A+++LM+R              
Sbjct: 366 FELEQAKKRAEIVDALEQAISVLDETLELIRSAKDKADAKKKLMER-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +E Q  A++ L+L RLT     +++ E  +L  EI    +IL   
Sbjct: 412 ------------FSFTERQAEAVVMLQLYRLTNTDIVELQKEAKALQKEIARLSNILDVD 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +    +I +EL +++DE    RR+ I   +  L ++ E  I  E+ +V VS  GYVKR  
Sbjct: 460 ATKRKLIVKELTALRDEFGDDRRSVIESEVEELKLKTEVMIAVEETMVFVSRDGYVKRAS 519

Query: 553 LSVYRAQRRGGKGRSGVVM-----RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +  Y        G S  V+     +D   +T   + + H  +L +++ G      V ++P
Sbjct: 520 MRSY--------GASSDVLPEMKEKDRPLLTTQAMTTDH--LLVWTNKGSYLLIPVHQIP 569

Query: 608 IGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
               +  G+ + N++ + +GE++ +   +  F  D       + +F TK G V+R  L D
Sbjct: 570 ESKWKDAGQHVANLVPI-EGEQVISADVVSTFDTDA------HCLFVTKDGMVKRTPLRD 622

Query: 665 FIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +    +S  + A+KL   DE++          + L ++ G  + F    + V  G+ + G
Sbjct: 623 YDAQRKSKPLMALKLKGDDEVVFAGISDGPGQLFLVSERGYGLWFKEDDVPV-VGQRAAG 681

Query: 724 VRGISLAKGDQV 735
           V+ ++L  GD V
Sbjct: 682 VKAMNLKDGDLV 693


>gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 767

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/595 (40%), Positives = 354/595 (59%), Gaps = 26/595 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG 
Sbjct: 23  LGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKLSATGGFRKSAKISGDVMGN 82

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+  AA  LL+
Sbjct: 83  YHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAARYTEARMTLAAEALLE 142

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L ++ VDFR NYDG+  EPVVL A +PN+L NG  GIAVGMATNIP HN+ E+ + C+ 
Sbjct: 143 GLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSSGIAVGMATNIPPHNIAELCEACLH 202

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +I  PD   D L+  + GPDFPTG  I+  +  I  AY TGRGS  +R    +E     +
Sbjct: 203 LIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAEAYRTGRGSFRLRCKYEVEDLGRGQ 262

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADV 322
            QIVVTEIPYQV K+ ++EKIA+L++ K+I  + D+RDES  +  R+V+E + +    D+
Sbjct: 263 WQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDIRDES-AEDVRIVLEPRSKNVEPDI 321

Query: 323 ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           +++ LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R +V++RR+ + + K  
Sbjct: 322 LMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRAFLDHRRDVLIRRSTHRMEKID 381

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R  VL GL IA  NLD V+ IIR+  +P+ A   LM+  W     +     + ++ Y  
Sbjct: 382 HRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LMREDWG----RTFTRAMSEADYVG 434

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
              G   L+EVQ  AIL +RL  L  L   +++ E ++L  E     D+L+S       I
Sbjct: 435 PPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRERDALMEERAGLDDLLNSVELQWSSI 494

Query: 502 KQELLSVKDEL--DTP---RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             ++   K +   D P   RR++  E   + ++  E  I RE + V  S +G+++ +   
Sbjct: 495 ADQIRETKKQFGKDHPAGARRSQFAEAGEVEEVPLEAMIDREPITVVCSEMGWIRAMTGH 554

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +   +         +  +D D    +F   T   +L F S G  Y      LP G
Sbjct: 555 IDLTRE--------LKFKDGDGPRFIFHAETTDRLLAFGSNGRFYTVSAANLPGG 601


>gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
 gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
          Length = 767

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 252/614 (41%), Positives = 360/614 (58%), Gaps = 32/614 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +   
Sbjct: 7   DPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPT 66

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA 
Sbjct: 67  GGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAS 126

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  GIAVGMAT
Sbjct: 127 RYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMAT 186

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           NIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+  +  I  AY TGRG+
Sbjct: 187 NIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGA 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+RDES    
Sbjct: 247 FRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDES-ADD 305

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFR 365
            R+V+E + R    ++++  L+R + L+  FS+NM V ++G  P   +L  +L+AF+  R
Sbjct: 306 VRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P   +R LM  SW   
Sbjct: 366 RDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADP---KRALMAESWE-- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E ++L  E +
Sbjct: 421 --RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAE-R 477

Query: 486 ECLDILSSRSRL--------LGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVR 535
             L+ L    RL        LG I++  L  K  +   RRT+  E   + ++  E  I R
Sbjct: 478 ADLEALIGSERLQWDRIGHDLGEIRK--LFGKWTVAGARRTQFAEAGEVEEVPLEAMIER 535

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V  S +G++        RA +      +    +D D    LF   T   +L   S 
Sbjct: 536 EPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSN 587

Query: 596 GFVYKEKVWRLPIG 609
           G  Y      LP G
Sbjct: 588 GRFYTLTGASLPGG 601


>gi|227872281|ref|ZP_03990640.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841893|gb|EEJ52164.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 744

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/729 (35%), Positives = 416/729 (57%), Gaps = 35/729 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +   ++EMQ SYL Y+++VI  RA+PD+RDGLKPV RR+LF M ++ V  ++  +K A
Sbjct: 5   ILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLFDMGELRVFHDRPTLKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  +AQ +     L+EGQGNFGS++GD  AA RYTE RL
Sbjct: 65  RICGDTMGKYHPHGDSSIYETLVVLAQGFKKNQALVEGQGNFGSIEGDSAAAPRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K     LL DL   +V F+PNYDG  +EPVVL A+ P  L+NG  GIAVGM T+ P+HN
Sbjct: 125 EKFTEEVLLQDLAL-SVPFQPNYDGKLEEPVVLPAKIPYFLLNGSEGIAVGMTTSTPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+   ++ + NP++ L  ++EI+ GPDFPTG ++  ++ ++  Y TG+G + +RG  
Sbjct: 184 LSEVISLILSYLKNPELSLSEMLEIMPGPDFPTGGIVANQSELEEIYRTGQGRLRLRGKL 243

Query: 255 HIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             EK  G  DR+++VVTEIPY +     +  ++ +A L  EK+I DI D+ ++S+ QG R
Sbjct: 244 SFEKKEGRSDRDKLVVTEIPYTMVGQGISKFMQDVANLCEEKKINDILDISNQSNEQGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK GA  + I N LY+ T L+  F VNM+A+   +PE  +L  IL+ ++ F+ E +
Sbjct: 304 IVLELKSGADIEKIENILYKKTKLEDSFPVNMLAIAHGRPETLSLKRILEEYLGFQVERL 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +   LL K   +  +  GL  AV  +D ++ ++R + N + A+  LMQ   +   +K+
Sbjct: 364 EAKFSKLLEKEERKREIEEGLISAVDCIDAIIALLRGAKNHKDAKTALMQGDLSLIQLKE 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                 D  +    +G  + +++Q +AIL++RL++L GL    ++         IK   +
Sbjct: 424 -----RDEVFRKTIEGFRF-TDLQAQAILDMRLSKLIGLEILSLQKSHRESLKNIKNYKE 477

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L S+  L   ++QELL ++ +    R+T+I +    + D+  I   D+       GYVK
Sbjct: 478 LLGSKKVLYAHLEQELLQIQKDYGKERKTKICDAREAVYDDTAIEEMDLYYLQDRFGYVK 537

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    ++  +   +     V+  ++  TD         +LFF+ LG +++ K+  +P+ 
Sbjct: 538 CVDPGTFQRNKESIEADYAYVLPCKN--TD--------RLLFFTDLGNMHQIKILDVPVT 587

Query: 610 SPQARGKALINILSLN-QGERITTIM--PFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             + +G  L N+   + + ER+  +      E+E+      ++F T+   ++R K  +F 
Sbjct: 588 KFKDKGVPLDNLSKFSAEQERVVAVFIRKVLEEET------LLFVTEQAQIKRVKGEEFA 641

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             NR  + A KL   D +LSV    +E DI+L T+    +RF +S + +   + + GV  
Sbjct: 642 TQNRLVQ-ATKLGEEDRLLSVLPVGEE-DIVLETEDSYFLRFSLSEVPL-QKKTAKGVLA 698

Query: 727 ISLAKGDQV 735
           +SL   D V
Sbjct: 699 MSLRPKDYV 707



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           L+E+ +L V+E+   KR    +F   NR    ++AT   K+ E   L++V PV + D I+
Sbjct: 618 LEEETLLFVTEQAQIKRVKGEEFATQNRL---VQAT---KLGEEDRLLSVLPVGEED-IV 670

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           L ++    +R  ++E+ +  +  KGV+  S    + V  V  +   E V+
Sbjct: 671 LETEDSYFLRFSLSEVPLQKKTAKGVLAMSLRPKDYVKKVYSLAAEENVE 720


>gi|261886133|ref|ZP_06010172.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/390 (53%), Positives = 286/390 (73%), Gaps = 5/390 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I SS+++    I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENIFSSNQD----IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  ++GQGNFGSV
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M  I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIEK   +++ IVV E+PYQVNKA +   IA+LV+EK I  I+++R
Sbjct: 237 YKTGRGRIKLRAKTHIEKKP-NKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK 
Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           F+  R+ V++RRT + L KAR RAH+L G 
Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGF 385


>gi|153813001|ref|ZP_01965669.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
 gi|149830948|gb|EDM86038.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
          Length = 748

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 248/744 (33%), Positives = 404/744 (54%), Gaps = 30/744 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K      L DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQDVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D   A + +  I +  LM  I+GPDFPTG +++ +  +   Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVKAYMKDNTISVKGLMRYIKGPDFPTGGIVVNKDDLHKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG   +EK  G R+Q+V+TEIPY +   N    L  +A L+  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEVEKLKGGRKQLVITEIPYTMLGANIGKFLNDVASLIETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+    + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F 
Sbjct: 302 EGIRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQIIEYHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL+K  ++  V  GL  A   +D ++ I+R S N E  ++ L++      
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +  +   +  +E Q  AIL++RL +L GL  + ++ E       I 
Sbjct: 422 KFK--------SKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEHEETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL +   +  +I +++ ++K E    RRT I      + +E  +   ++   +   
Sbjct: 474 LYKDILDNYDSMAAVIIKDMDAIKKEYGRKRRTAIENAEEAVYEEKKMEEMEVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K +  + Y   +         V  +  +V   F       +  F+  G ++  K   
Sbjct: 534 GYMKLIDKNAYERNKEA-------VHNENKYV---FNCMNTDKICIFTDTGKMHTIKAVD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+G  + +G  + N+ + +   ER+  + P  +  S      ++F TK    +  + ++
Sbjct: 584 IPLGRFRDKGTPVDNLSNYDSSQERMLYVAPVGQLRSDR----LLFVTKTSMCKLVEGAE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    + KL   DE++ + + ++   I+L +  G  +RF    +     + ++GV
Sbjct: 640 F-DVAKRTIASTKLADEDELIFIGSASEMEQIVLQSHGGCFLRFLAQEVSTMK-KTALGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADY 748
           RG+ LA  D  +  A +L    +Y
Sbjct: 698 RGMKLA-DDDYLEHAYLLAGHQEY 720


>gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
          Length = 767

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/614 (41%), Positives = 359/614 (58%), Gaps = 32/614 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +   
Sbjct: 7   DPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPT 66

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA 
Sbjct: 67  GGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAS 126

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  GIAVGMAT
Sbjct: 127 RYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMAT 186

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           NIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+  +  I  AY TGRG+
Sbjct: 187 NIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGA 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+RDES    
Sbjct: 247 FRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESA-DD 305

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFR 365
            R+V+E + R    ++++  L+R + L+  FS+NM V ++G  P   +L  +L+AF+  R
Sbjct: 306 VRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P   +R LM  SW   
Sbjct: 366 RNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADP---KRALMAESWG-- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E ++L  E +
Sbjct: 421 --RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAE-R 477

Query: 486 ECLDILSSRSRL--------LGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVR 535
             L+ L    RL        LG I++  L  K  +   RRT+  E   + ++  E  I R
Sbjct: 478 ADLEALIGSERLQWDRIGHDLGEIRK--LFGKWTVAGARRTQFAEAGEVEEVPLEAMIER 535

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V  S +G++        RA +      +    +D D    LF   T   +L   S 
Sbjct: 536 EPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSN 587

Query: 596 GFVYKEKVWRLPIG 609
           G  Y      LP G
Sbjct: 588 GRFYTLTGASLPGG 601


>gi|154488789|ref|ZP_02029638.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
 gi|154082926|gb|EDN81971.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
          Length = 891

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/520 (43%), Positives = 329/520 (63%), Gaps = 33/520 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMSLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+  AA  +  D+ ++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIVGRKGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR  G R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +             LI
Sbjct: 377 RSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTK-------------LI 423

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            + D             L E+Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 424 AVFD-------------LDEIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           +S   L G++  E+     +  TPRRT +++     EDE+
Sbjct: 471 ASDEALDGVVIDEMDDAVAKYGTPRRTVLLD-----EDEE 505



 Score = 44.3 bits (103), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 112/272 (41%), Gaps = 30/272 (11%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPL-SVYRAQRRGGK-GRSGVVMRDEDFVTDLFI 582
           L ++DE C       V +S  G + R    +V R + R    GR+      +D +  +F 
Sbjct: 560 LQIDDEPC------AVMLSATGLIARTSEDAVERWENRSASDGRA-----KDDQIVSMFR 608

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILSLNQ------GERIT 631
            ST +S    +S G +    V  LP  S         G     +L + +      GER+ 
Sbjct: 609 TSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVI 668

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
             +  P  +     + +   T++G V+R        ++    I +K D  DE+L+     
Sbjct: 669 AAIDMPSTDDGGQLVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDD--DEVLAAAEAR 726

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--DYD 749
            E+ ++  +     + F    +R   GR + G+ GI LA+G  V + A+V       +Y+
Sbjct: 727 DEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAGIRLAEGCSVAAFAVVPDGKVTWNYE 785

Query: 750 ERICYMKHMSAQRRL-ISGDTEEITSLKNDSS 780
           E    +   S    L ++GD+E +   +N ++
Sbjct: 786 EGENGLFSASGAVVLTVAGDSEALPGTENGAA 817


>gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114]
 gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114]
          Length = 765

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 258/656 (39%), Positives = 373/656 (56%), Gaps = 35/656 (5%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 24  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGDVMGNYHPH 83

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 84  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEAMLEGLNE 143

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDFR NYDG+  EPVVL A++PN+L NG  GIAVGMATNIP HN+ E+ D C+ +I  
Sbjct: 144 NAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCDACIHLIKT 203

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L++ + GPDFPTG VI+     I  AY TG+G   +R    +E     + QIV
Sbjct: 204 PDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFRLRCRWEVEDLGRGQWQIV 263

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES     R++IE + R    DV++  
Sbjct: 264 VTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDES-ADDIRMIIEPRSRSVDPDVLMGM 322

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           L+R   L+  FS+NM V ++G  P+  ++  +L+AF+  R+EV+ RR+ + L K   R  
Sbjct: 323 LFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEVLQRRSTHRLEKIDHRLE 382

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG-SD 444
           VL G  IA  NLD V+ IIR+  +P+ A   LM   W     +D    ++++ Y    S 
Sbjct: 383 VLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMAEDWG----RDHPRALNEADYVPPVST 435

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
             + L+EVQ  AIL +RL  L  L   ++  E  +L  E     D+L +       I ++
Sbjct: 436 DDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEERAGLEDLLENPGLQWASITEQ 495

Query: 505 LLSVKDELDT-----PRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L + K +         RRT   E  +  D+  E  I RE + V  S +G+V+ +   +  
Sbjct: 496 LRATKKQFGKDWDGGARRTTFSEAAVIEDVPIEAMIDREPITVVCSQMGWVRAMTGHI-- 553

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                  GR  +  +D D    +F   T   +L F S G  Y      LP G  +  G+ 
Sbjct: 554 -----DLGRE-LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGG--RGMGEP 605

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           L  ++ L     I TI+    D        ++ A+  G+      +D +   R+GK
Sbjct: 606 LRLMIDLPNEAEIVTILTHAPDRK------LLVASSAGDGFVVPEADVVAQTRTGK 655


>gi|119026025|ref|YP_909870.1| DNA topoisomerase IV subunit A [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765609|dbj|BAF39788.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
          Length = 891

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/520 (43%), Positives = 329/520 (63%), Gaps = 33/520 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+  AA  +  D+ ++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIVGRKGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR  G R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +             LI
Sbjct: 377 RSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTK-------------LI 423

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            + D             L E+Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 424 AVFD-------------LDEIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           +S   L G++  E+     +  TPRRT +++     EDE+
Sbjct: 471 ASDEALDGVVIDEMDDAVAKYGTPRRTVLLD-----EDEE 505



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 30/272 (11%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPL-SVYRAQRRGGK-GRSGVVMRDEDFVTDLFI 582
           L ++DE C       V +S  G + R    +V R + R    GR+      +D +  +F 
Sbjct: 560 LQIDDEPC------AVMLSATGLIARTSEDAVERWENRSASDGRA-----KDDQIVSMFR 608

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILSLNQ------GERIT 631
            ST +S    +S G +    V  LP  S         G     +L + +      GER+ 
Sbjct: 609 TSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVI 668

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
             +  P  +     + +   T++G V+R        ++    I +K D  DE+L+     
Sbjct: 669 AAIDMPSTDDDGQLVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDD--DEVLAAAEAR 726

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--DYD 749
            E+ ++  +     + F    +R   GR + G+ GI LA+G    + A+V       +Y+
Sbjct: 727 DEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAGIRLAEGCSAAAFAVVPDGKVTWNYE 785

Query: 750 ERICYMKHMSAQRRL-ISGDTEEITSLKNDSS 780
           E    +   S    L ++GD+E +   +N ++
Sbjct: 786 EGENGLFSASGAVVLTVAGDSEALPGTENGAA 817


>gi|160905586|gb|ABX52351.1| gyrase subunit alpha [Bacillus sonorensis]
          Length = 309

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/309 (62%), Positives = 248/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  AMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGEVVDG +AV  NPDI L  
Sbjct: 121 NYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVVDGVLAVSKNPDISLAE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VTEIPYQV
Sbjct: 181 LMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVTEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
          Length = 895

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/511 (42%), Positives = 324/511 (63%), Gaps = 28/511 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +  ++ +DTVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGGVIVGRKGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR  G R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVNHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L++            
Sbjct: 377 RSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIK------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           +S   L  ++  E+        TPRRT +++
Sbjct: 471 ASAEALDDVVIAEMDEAVATYGTPRRTVLLD 501



 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 114/274 (41%), Gaps = 30/274 (10%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
           L ++DE C       V +S  G + R   S    +R   +  +   ++D+  ++ +F  +
Sbjct: 560 LQIDDEPC------AVMLSATGLIART--SEDALERWENRSSADQRVKDDQIIS-IFRTT 610

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQA--------RGKALINILSLN---QGERITTI 633
           T +S    +S G +    V  LP+ S             + LI         +GER+   
Sbjct: 611 TRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGTTENTDPIRGERVIAA 670

Query: 634 MPFPEDESSWNNLY----VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           +  P  + S +N      +   T++G V+R        ++    I +K D  DE+L+   
Sbjct: 671 IAMPSADDSGDNAVEPTPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDD--DEVLAAAE 728

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--D 747
              E+ ++  +     + F    +R   GR + G+ GI LA+G    + A+V  +    +
Sbjct: 729 ARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAGIRLAEGCSAAAFAVVPASKVAWN 787

Query: 748 YDERICYMKHMSAQRRL-ISGDTEEITSLKNDSS 780
           Y+E    +   S    L ++GD+E +   +N S+
Sbjct: 788 YEEGENGLFSASGAVVLTVAGDSEALPGTENGSA 821


>gi|295110275|emb|CBL24228.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus obeum A2-162]
          Length = 748

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/744 (33%), Positives = 399/744 (53%), Gaps = 30/744 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K      L DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQEVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D   A + +  I +  LM  I+GPDFPTG +++ +  ++  Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVKAYMKDNTISVRGLMRYIKGPDFPTGGIVVNKDDLRKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG   +EK  G ++Q+V+TEIPY +   N    L  +A LV  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEVEKLKGGKKQLVITEIPYTMLGANIGKFLNDVASLVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+    + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F 
Sbjct: 302 EGIRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQIIEYHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL+K  ++  V  GL  A   +D ++ I+R S N E  ++ L++      
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +  +   +  +E Q  AIL++RL +L GL  + ++ E       I 
Sbjct: 422 KFK--------SKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEYQETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL +   +  +I +++ ++K E    RRT +      + +E  +    +   +   
Sbjct: 474 LYKDILENYDSMAAVIIKDMDAIKKEYGRKRRTAVENAEEAVYEEKKMEEMKVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K +  + Y   +      S  V          F       +  F+  G ++  K   
Sbjct: 534 GYMKLIDQNAYERNKEAIHNESKYV----------FNCMNTDKICIFTDKGKMHTIKAAD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G    N+ + N   E++  + P  +  +      ++F TK    +  + ++
Sbjct: 584 IPLVRFRDKGTPADNLSNYNSAEEQMLYVAPVGQIRTDR----LLFVTKSSMCKLVEGAE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    + KL   DE++ +    +   I+L +  G  +RF    I +   + ++GV
Sbjct: 640 F-DVAKRTIASTKLAEDDELIFIGGSAEMEQIVLQSHGGCFLRFLKQEISIMK-KTAIGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADY 748
           RG+ LA  D  +  A +L    +Y
Sbjct: 698 RGMKLA-DDDYLEHAYLLAGHQEY 720


>gi|56159836|gb|AAV80729.1| gyrase subunit A [Bacillus subtilis]
          Length = 319

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 256/318 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSLFSVNMVALNGYKPE 350
           LQ+ F +N++AL   +P+
Sbjct: 301 LQTSFGINLLALVDGQPK 318


>gi|13810761|gb|AAK40025.1|AF272015_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 313

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/313 (61%), Positives = 251/313 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I
Sbjct: 121 DYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVAL 344
           +LQ+ F +N++AL
Sbjct: 301 ALQTSFGINLLAL 313


>gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506]
 gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506]
          Length = 744

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 264/724 (36%), Positives = 392/724 (54%), Gaps = 62/724 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  I +D+     I  + +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGEPPIPTDD---GTIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHGN AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGGGFRKSAKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AAERYTE RL + A  +LD + +D VDFRPNYDG+ +EPVV+   +PN+L NG  
Sbjct: 118 DGDNAAAERYTEARLTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGST 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E++D  + +IDNP    D L++ ++GPDFPTG V++     I +
Sbjct: 178 GIAVGMATSIPPHNAAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIAD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R   H E+T      +VVTEIPY V K+ ++EKIA+L+ EK++  +AD+
Sbjct: 238 AYATGRGGFRLRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+V+E + R   A++++  L+R T L++ F +NM V + G  P+  +L   
Sbjct: 298 RDES-AEDVRLVLEPRARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ +V  R EV++RR+++ L +   R  VL G  IA  NLDEV+RIIR    P+    EL
Sbjct: 357 LREWVDHRREVLLRRSRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPKV---EL 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                          T  L++VQ  AIL +RL  L  L   +IR E 
Sbjct: 414 MR--------------------------TFELTDVQAEAILNMRLRSLRKLEEFEIRKEH 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMED 529
           ++L  E      +L S +R    +  EL   +     DTP   RRT   E      D   
Sbjct: 448 DALSKEKDGIEKLLGSEARQWKTVAWELGETRKIFGPDTPLGRRRTGFGEAAAHDADAVS 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G++        RA +      S +  + +D +   F   T   +
Sbjct: 508 EALVEREPITVVVSEKGWI--------RALKGHVADLSALAFKGDDELRISFFTETTAKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y     +LP G  +  G+ L   + L Q   I  ++P+           ++
Sbjct: 560 LVFATNGRFYTLDASKLPGG--RGHGEPLRLSIELEQEADIVDVLPYQ------GGRKLL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A K G        + +   R GK  + +D +D +  +        ++   +  + + FP
Sbjct: 612 VAAKEGRGFLVAEDECVANTRKGKQVLGVDGQDAVKVIPAIGDSVAVIGENR--KLLVFP 669

Query: 710 ISAI 713
           +S I
Sbjct: 670 LSQI 673


>gi|320531395|ref|ZP_08032363.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136396|gb|EFW28376.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 849

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 282/786 (35%), Positives = 409/786 (52%), Gaps = 115/786 (14%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +VK +
Sbjct: 17  IVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSS 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 77  RVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A  L  DL ++TVDF PNYD +  EP VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 136 AASALALTADLDENTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY TGRG  + R  +H
Sbjct: 196 VEVVAAARHLLTHPEASLEDLMAFVPGPDLPAGGMIVGLDGIREAYRTGRGKFLTRATAH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314
           +E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +D R G R+VI +
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKIITRIKEAVGSKKLQGITDVADLTDRRHGTRLVISV 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLY++T L+  F +N V+L   +P    L  +L  FV  R  VV RRT+
Sbjct: 316 KNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLDVFVRHRLTVVTRRTR 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ               
Sbjct: 376 FRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ--------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q   ILEL+L RLT     ++  E + L  EI+    IL+  
Sbjct: 421 -----------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILADD 469

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG------------------------------- 523
             L  ++ +EL  V ++  TPRRT ++E                                
Sbjct: 470 VLLRRVVSRELADVAEQFGTPRRTVLLEASGEPVTSSAGSAATPDDASTASGGGEKRTGA 529

Query: 524 --------------LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS--VYRAQRR------ 561
                          L + D+ C       V +S  G V R+P +  V R  RR      
Sbjct: 530 SAQPMTLMPSASPVPLTVPDDPC------RVVLSATGLVARIPGAEPVARTGRRQPHDAL 583

Query: 562 ------GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
                   +GR G V  D   +  L +VST        + G            G+ Q R 
Sbjct: 584 TSQVSATARGRIGAVT-DTGRLVLLDVVSTTEVPRTEGAPGLA----------GATQVR- 631

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
                ++ +   E++  ++P      S +N  +V AT  G ++R K  D  +   S ++ 
Sbjct: 632 ----QLVDIEPEEKVVGLVPV----GSADNPPIVLATAEGVIKRVKPGDEPRNAESWEV- 682

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++   T    + + + T   Q +RF  + +R   GR + G+ GISL +G +V
Sbjct: 683 ISLSEGDRVVFAGTAADTDFLTMVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARV 741

Query: 736 ISMAIV 741
           I+ A V
Sbjct: 742 IAGAAV 747


>gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 895

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/533 (42%), Positives = 335/533 (62%), Gaps = 37/533 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +  ++G++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIVGRNGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+ + D +DR  G R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL ++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLLKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+ +             LI
Sbjct: 377 RSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTK-------------LI 423

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            + D             L E+Q + IL+LRL RLT + R ++ +E + L   I+E   IL
Sbjct: 424 AVFD-------------LDEIQAQYILDLRLRRLTKMSRIELESERDDLKQRIEELDRIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +S   L  ++  E+        TPRRT +++     ED D      +V  V+H
Sbjct: 471 ASAEALDNVVISEMDEAVATYGTPRRTVLLD-----EDADG----KLVPVVAH 514



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 115/274 (41%), Gaps = 30/274 (10%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
           L ++DE C       V +S  G + R   S    +R   +  +   +RD+  ++ +F  +
Sbjct: 560 LQIDDEPC------AVMLSATGLIART--SEDALERWENRSSADKRVRDDQIIS-IFPTT 610

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQA--------RGKALINILSLN---QGERITTI 633
           T +S    +S G +    V  LP+ S             + LI +       +GER+   
Sbjct: 611 TRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGVHAEELIGMTENTDPIRGERVIAA 670

Query: 634 MPFPEDESSWNNLY----VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           +  P  + S ++      +   T++G ++R        ++    I +K D  DE+L+   
Sbjct: 671 IAMPTADDSGDHAAEPAPLALGTRNGVIKRWNRESPTTMDSWSIIDLKDD--DEVLAAAE 728

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--D 747
              E+ ++  +     + F    +R   GR + G+ GI LA+G  V + A++       +
Sbjct: 729 ARDEDRLVFVSTDSSLLTFDAKNVRP-QGRTAGGMAGIRLAEGCSVAAFAVIPANKVAWN 787

Query: 748 YDERICYMKHMSAQRRL-ISGDTEEITSLKNDSS 780
           Y+E    +   S    L ++GD+E +   +N S+
Sbjct: 788 YEEGDNGLFSASGAVVLTVAGDSEALPGTENGSA 821


>gi|227496006|ref|ZP_03926317.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834437|gb|EEH66820.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 519

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/508 (44%), Positives = 315/508 (62%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +VK +
Sbjct: 16  IVEQDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSS 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 76  RVVGDVMGRLHPHGDVAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARL 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L  D+ +DTVDF PNYD +  EP VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 135 ASPALALTADIDEDTVDFSPNYDYTLTEPDVLPAAFPNLLVNGTSGIAVGMATNMPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     +I +P+  L+ LM  + GPD PTG +I+G  GI+ AY TGRG  + R  + 
Sbjct: 195 VEVVSAARHLITHPEASLEDLMAFVPGPDLPTGGMIVGLDGIREAYRTGRGKFLTRATAR 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++ +I + V  K++  I D+ D +DR+ G R+VI +
Sbjct: 255 IENITPRKKGIVVTELPYLVGPEKVIARIKDAVSAKKLQGITDVADLTDRKNGTRLVIGV 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G + + +L QLY++T L+  F +N V L   +P    L  +L  FV  R  VV RRT+
Sbjct: 315 KNGYNPEAVLAQLYKHTPLEDSFGINNVCLVDGQPRTLGLRELLDVFVRHRMTVVERRTR 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K R+R H++ GL IA+ ++DEV++++R S +  TAR  LMQ               
Sbjct: 375 FRLGKRRERQHLVEGLLIAILDIDEVIQVVRSSDDAATARTRLMQ--------------- 419

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q   ILEL+L RLT     ++  E + L  EI++   IL+  
Sbjct: 420 -----------VFDLSEAQASYILELQLRRLTKFSVIELEKERDELAREIEQLEAILADE 468

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
           + L G++ +EL +V +E  TPRRT ++E
Sbjct: 469 TLLRGVVSRELAAVAEEFGTPRRTVLLE 496


>gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601]
          Length = 807

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 246/629 (39%), Positives = 357/629 (56%), Gaps = 58/629 (9%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  N  ++K A+ISG+ MG +H
Sbjct: 25  DRYLTYALSTIMNRALPDARDGLKPVHRRILYAMRRLRLSSNGGFLKSAKISGDTMGDFH 84

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LLD L
Sbjct: 85  PHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGDNPAASRYTEARMTIMAEALLDGL 144

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            +++VDFRPNYDG  +EP VL A YPN+L NG  GIAVGMATNIP HN+GE++D C+ +I
Sbjct: 145 DENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIAVGMATNIPPHNIGELIDACLHLI 204

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
             P    D L++ + GPDFPTG VI+  R  I  AY TGRGSI +R    +E     + Q
Sbjct: 205 KAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQAYRTGRGSIRLRAKWEVEDLGRGQWQ 264

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVIL 324
            VVTEIPYQV K+ ++E++AEL++ K++  +AD+RDES  +  R+V+E K +    D+++
Sbjct: 265 AVVTEIPYQVQKSKLVERLAELIQTKKVPILADIRDES-AEDIRMVLEPKSKNVDPDLLM 323

Query: 325 NQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           N L++ + L++ FS+NM V ++G  P+  +L  +L+AF+ FR +V+ RR ++ + K  +R
Sbjct: 324 NMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRRDVLCRRARHRMAKIDNR 383

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY---- 439
             VL GL IA  NLD V+ IIR+  +P+ A   LM   W+      +    D+  Y    
Sbjct: 384 LEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LMYEDWSKPHQATIARATDERDYRSPL 440

Query: 440 --------------------TIGSDGTMY------------LSEVQTRAILELRLARLTG 467
                                +  +GT              LS+VQ  AIL +RL  L  
Sbjct: 441 AGIDVKALELRPDPEAEARGVLADEGTPTQIPQRFGGRSEGLSDVQAEAILNMRLRSLRR 500

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLL 525
           L   ++ NE + L  E     D+L+S       + ++L  VK     D  R  R+     
Sbjct: 501 LEELELVNERDKLMEERAGLEDLLASEDLQWKRVSEQLREVKKAFAKDLDRGARLTTFAE 560

Query: 526 DMEDEDC-----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
             E ED      I RE + V  S +G+++ +   +   +         +  +D D    +
Sbjct: 561 AGEAEDVPLEAMIEREPITVVCSQMGWIRAMTGHIDLNRE--------LKFKDGDGPRFI 612

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           F   T   +L   S G  Y      LP G
Sbjct: 613 FHAETTDKLLVVGSNGRFYTLSAANLPGG 641


>gi|73916818|gb|AAZ93277.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 764

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 284/848 (33%), Positives = 450/848 (53%), Gaps = 127/848 (14%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE
Sbjct: 2   KSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP 
Sbjct: 62  ARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPP 121

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R 
Sbjct: 122 HNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRS 181

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ I
Sbjct: 182 KTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 241

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R
Sbjct: 242 ELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILAR 301

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++   KA  R H++ GL   ++ LDEV+ +IR S N   A +E ++ S++         
Sbjct: 302 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD--------- 351

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      ++ E   L  +I     I+ 
Sbjct: 352 ----------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIG 395

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               +  ++K+EL  VK +  TPR + +      ++++    I  ED  V+V+  GY+KR
Sbjct: 396 DERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKR 455

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPI 608
                + A      G+     RD+D +  +F+ S  T+  +L F+SLG V    ++R PI
Sbjct: 456 TSPRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PI 503

Query: 609 GSPQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVFA-TKHGNVR 658
                    L +I   + GE ++ TI  F  +E          +++    FA T+ G ++
Sbjct: 504 HE-------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIK 556

Query: 659 RNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R +  +F       ++S K A   D  D+I++V    + +D++L ++ G  +RF I  + 
Sbjct: 557 RVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVP 615

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           V  G  + GV+ ++L K D V+    + +  + Y         +  QR           S
Sbjct: 616 V-VGAKAAGVKAMNL-KEDDVLQSGFICNTSSFY---------LLTQR----------GS 654

Query: 775 LKNDSSVEGNISEERCQ-------ELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSG 824
           LK   S+E  ++  R +       ELK K   +     V+E+GF                
Sbjct: 655 LKR-VSIEEILATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGF---------------- 697

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIF 883
                        +G   +   V+ NDQ +LV S+KGT+    + ++ ++ R + G  I 
Sbjct: 698 -------------VGDFFST-EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFIS 743

Query: 884 STAKDERV 891
            T  DE V
Sbjct: 744 DTISDEEV 751


>gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri]
          Length = 1132

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 257/735 (34%), Positives = 413/735 (56%), Gaps = 60/735 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S++E+E + +   S+ D M   +  YA  +I  RA+PD+RDGLKPV RRILF M ++ +
Sbjct: 1   MSNNEKENELV--YSLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELRL 58

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +N  Y K ARI GEV+GKYHPHG+ ++YDA+ R++Q+W +R  LI+  GN GS+DGDP 
Sbjct: 59  TFNTSYKKSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDPA 118

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL + + FLL DL K TV F PN+D S QEPVVL A +PN+LVNG  GIA G
Sbjct: 119 AAMRYTETRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAAG 178

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            ATNIP HNL E+++  +  I+ PD  +  L++ ++GPDFPTG +I G++GI  AY TG+
Sbjct: 179 YATNIPPHNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGGIIQGKSGILEAYQTGK 238

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++R      K   +   +V+TEIPY+V K  +++KI ++   +  ++I ++RDE+DR
Sbjct: 239 GKIIVRS-----KIKFENNALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDETDR 293

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIEL + A+ + +   L + T+LQ  ++ NMVA+   +P +  L  IL  +V  +
Sbjct: 294 EGLRIVIELGKQANVETVRKFLLKNTNLQISYNFNMVAIANKQPRQLGLKEILTHYVEHQ 353

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EV+   +++ L +A+ R+ ++ GL   ++ LDEV+ +IR+S                  
Sbjct: 354 QEVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYS------------------ 395

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             KD  D I +     G       +++Q  AI++LRL RLT      ++ E   L   I 
Sbjct: 396 --KDRSDAIHNLVKKFG------FTQIQAEAIVQLRLYRLTSTDILQLKAEQKELIATIA 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVS 543
           E   IL   ++L  +I  +L  +K +  + RR+        ++++  + I+ +D+ + +S
Sbjct: 448 ELKAILRDINKLNSVIIHQLELIKKKFASRRRSVIENEIEAIEIQKTETIIEKDLNIWIS 507

Query: 544 HLGYVKRVPLS-VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF----- 597
             GY+K +  + + R      K + G      D     F  +T   +L  +S G      
Sbjct: 508 RDGYLKALENNQLARLVNEEFKRKPG------DLWIADFQANTSDKILLITSKGNYVIIP 561

Query: 598 VYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           VY+ K  RL  IG         IN +S   GE    I  F  ++ +    Y++ ATK+G 
Sbjct: 562 VYQIKTVRLRDIGEH-------INTISELPGEE-KIISAFLLNDFNKKEQYIMLATKNGM 613

Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +++  + DF   +I+++ K A+ L + DE+++ +       +++TT  G  V++    I 
Sbjct: 614 IKKTAVKDFEATRISKALK-AINLKNDDEVVASQLVGHHPYVVITTANGFIVKYHKKQIP 672

Query: 715 VFAGRNSVGVRGISL 729
              G  + GV+ I+L
Sbjct: 673 TL-GLRTAGVKSINL 686


>gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 898

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/727 (34%), Positives = 413/727 (56%), Gaps = 49/727 (6%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K Y K AR+ GEV+GKYH
Sbjct: 18  NRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYH 77

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RYTE RL K ++ LL+DL
Sbjct: 78  PHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKISNLLLEDL 137

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+P HNL E++D  +++I
Sbjct: 138 EKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDASISII 197

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I    H EK +     I
Sbjct: 198 KNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSKWHQEKNN-----I 252

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           VV EIPY+V K  +++KI +++     + I ++RDE+DR+G R+VIEL   A+ + +   
Sbjct: 253 VVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKANLETVRKF 312

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L++ T L   ++ N + +   +P++  LI I+KA+++  +EV ++RT++ LNKA  R  +
Sbjct: 313 LFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEI 372

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL  A++ LDEV+++IR S N   A   L++                          T
Sbjct: 373 VNGLIKALSILDEVIKVIRKSENRIDAINNLVK--------------------------T 406

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              +  Q+ AI+++RL RLT    + +  E   L  +IK+  +IL++   L   I   L 
Sbjct: 407 FNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLE 466

Query: 507 SVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
            VK +    R+++ VE L   LD++ ++ I+ +++ + +S  GY+K +  ++        
Sbjct: 467 EVKKQFGIKRKSQ-VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSS 525

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
            G+     +  D      + S    ++  S     Y   ++++     + +G  + ++ +
Sbjct: 526 FGK-----KPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVAT 580

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSR 681
               E I       E  +S  +L +V  +K+G ++R ++SD      N+S KI MK+   
Sbjct: 581 TQPNETIINAFIIKEFINSTQHLLLV--SKNGLIKRTQISDLETKIFNKSFKI-MKISDD 637

Query: 682 DEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           D ++  +  + +     + TK G  VR+ I  I V     S GV+  +L K D +IS A+
Sbjct: 638 DSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPV-QSTISKGVKAANL-KDDYIIS-AL 694

Query: 741 VLHADAD 747
            L  + D
Sbjct: 695 SLDNNKD 701


>gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 898

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 252/727 (34%), Positives = 412/727 (56%), Gaps = 49/727 (6%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K Y K AR+ GEV+GKYH
Sbjct: 18  NRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYH 77

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RYTE RL K ++ LL+DL
Sbjct: 78  PHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKISNLLLEDL 137

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+P HNL E++D  + +I
Sbjct: 138 EKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDATINII 197

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I    H EK +     I
Sbjct: 198 KNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSKWHQEKNN-----I 252

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+VIEL   A+ + +   
Sbjct: 253 VIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKANLETVRKF 312

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L++ T L   ++ N + +   +P++  LI I+KA+++  +EV ++RT++ LNKA  R  +
Sbjct: 313 LFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEI 372

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL  A+A LDEV+++IR S N   A   L++                          T
Sbjct: 373 VNGLIKALAILDEVIKVIRKSENRIDAINNLVK--------------------------T 406

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              +  Q+ AI+++RL RLT    + +  E   L  +IK+  +IL++   L   I   L 
Sbjct: 407 FNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLE 466

Query: 507 SVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
            VK +    R+++ VE L   LD++ ++ I+ +++ + +S  GY+K +  ++        
Sbjct: 467 EVKKQFGIKRKSQ-VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSS 525

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
            G+     +  D      + S    ++  S     Y   ++++     + +G  + ++ +
Sbjct: 526 FGK-----KPNDMWIGQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVAT 580

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSR 681
               E I       E  +S  +L +V  +K+G ++R ++SD      N+S KI MK+   
Sbjct: 581 TQPNETIINAFIIKEFINSTQHLLLV--SKNGLIKRTQISDLETKIFNKSFKI-MKISDD 637

Query: 682 DEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           D ++  +  + +     + TK G  VR+ I  I V     S GV+  +L K D +IS A+
Sbjct: 638 DSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPV-QSTISKGVKAANL-KDDHIIS-AL 694

Query: 741 VLHADAD 747
            L  + D
Sbjct: 695 SLDNNKD 701


>gi|308234790|ref|ZP_07665527.1| DNA topoisomerase IV subunit A [Gardnerella vaginalis ATCC 14018]
 gi|311114503|ref|YP_003985724.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945997|gb|ADP38701.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 889

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 274/802 (34%), Positives = 423/802 (52%), Gaps = 103/802 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +     Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLTPEHAYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ T
Sbjct: 137 ARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +P+  LD LM+I+ GPD+P G +I+GR+GI+ AY TGRG+   R 
Sbjct: 197 HNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPGGGIIIGRSGIREAYETGRGAFTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
            +HIE  +  ++ I+VTE+P+ V    +LE+I++ ++ +++  I+   D +DR  G R+V
Sbjct: 257 KTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGISGAIDLTDRHNGTRIV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWILHRRTVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ LNKA++R H++ GL +A+ ++DEV+++IR S + ETA+ +             LI
Sbjct: 377 RSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKSK-------------LI 423

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            + D             L E+Q + IL+LRL RLT + R ++  E N L  +I E  +IL
Sbjct: 424 SVFD-------------LDEIQAQYILDLRLRRLTKMSRIELEGEKNDLLQKIDELNEIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED------CIVRE--------- 536
           SS S+L  ++  E+     + DTPRRT +++     E ED      C             
Sbjct: 471 SSASQLDKVVIAEMDYAVKQWDTPRRTILLD-----EQEDGSFTPVCTKNSKEVNSDSAM 525

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGK-------------------GRSGVVMRD--ED 575
           D V+  + L   +    +   A R+ G                      SG++ R   E 
Sbjct: 526 DAVIAANQLTNAQADVAAAASAARKSGDTDATSAALQLSDEPCAVALSTSGLIARTSVET 585

Query: 576 F--------------VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--------IGSPQA 613
           F                ++F  +T  +    +S G +    V  LP        +    +
Sbjct: 586 FNRWQSHSSNIFDTPCLNVFTTTTRATYALITSAGRLVIAHVADLPHLNQGDENVSESLS 645

Query: 614 RGKALINILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G     +L+  Q      GE++   +   E +S      +   TK+G V+R        
Sbjct: 646 NGVKASELLTSTQSTDPIRGEKVVAAIALSESDS---KTPLAIGTKNGVVKRWNFESPTT 702

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++    I +K    D +++      E+ ++  +     + F    +R   GR+S G+ GI
Sbjct: 703 MDSWSIIDLK--DNDSVINAALANDEDRLVFISSDSSLLTFDAKQVRA-QGRSSAGMAGI 759

Query: 728 SLAKGDQVISMAIVLHADADYD 749
            L +   V + A+V   D +++
Sbjct: 760 RLNEECTVSAFAVVAKNDVEWN 781


>gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
 gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
          Length = 768

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/593 (40%), Positives = 353/593 (59%), Gaps = 29/593 (4%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LLD L +
Sbjct: 87  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAFAEALLDGLAE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG+ +EP+VL A +PN+L NG  GIAVGMATNIP HN+ E++D C+ +I +
Sbjct: 147 DAVDFRDNYDGTLREPIVLPASFPNLLANGSSGIAVGMATNIPPHNIAELIDACLHLIKS 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   + L+  I GPDFPTG VI+     I  AY TGRG+  +R    +E     + QIV
Sbjct: 207 PDARDETLLTYIPGPDFPTGGVIVEPPESIAQAYLTGRGAFRLRCKWALEDLGRGQWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++E+IAEL++ +++  +AD+RDES     R+V+E + +    +V++  
Sbjct: 267 VTEIPYQVQKSKLIERIAELIQTRKVPILADVRDES-ADDVRLVLEPRSKNVDPEVLMGM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +YR + L+  FS+NM V ++G  P+  +L  +L+AF+ FR+EV++RR+ + + K   R  
Sbjct: 326 MYRNSELELRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRQEVLLRRSAHRMEKIDHRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL GL +A  NLD V+ IIR+  +P+ A   LM+  W  +  + + +    S       G
Sbjct: 386 VLEGLIVAFLNLDRVIDIIRYDDDPKAA---LMREDWGRTVPRAMSEADYVSPPPTDEPG 442

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L++VQ  AIL +RL  L  L   ++R E ++L  E     D+L   S     +  +L
Sbjct: 443 ---LTDVQAEAILNMRLRSLRRLEEMELRAERDALMQERAGLEDLLEDVSLQWAAVADQL 499

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP--LSVY 556
             V+           RRT+  E   + ++  E  I RE + V  S +G+++ +   L + 
Sbjct: 500 KEVQKTFGKTHPIGARRTKFAEAGSVEEVPLEAMIDREPITVVCSQMGWIRAMTGHLDLS 559

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +           +D D    +F   T   +L F S G  Y      LP G
Sbjct: 560 RELK----------FKDGDAPRFMFHAETTDRILVFGSNGRFYTISASNLPGG 602


>gi|294790962|ref|ZP_06756120.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458859|gb|EFG27212.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 891

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/523 (42%), Positives = 326/523 (62%), Gaps = 31/523 (5%)

Query: 3   EHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +H  S D    ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   QHAASYDPRTIKQNIVDTPLGEEMSTSFLAYAYSVIYARALPDTRDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  +K Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMGLSPDKSYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  + + +G++TVDF PNYD   QEP VL +  PN+LVNG  G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNESIGEETVDFTPNYDNKLQEPTVLPSAIPNLLVNGASG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +P+   + LM  + GPD P G +I+GR GIK AY
Sbjct: 185 IAVGMATNMVTHNLGEVVSAAKYLMAHPNASTEDLMTYLPGPDLPGGGIIMGREGIKEAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            +GRGS + R  +HIE  +  ++ IVVTE+P+ V    +LE+I+E ++ K++  I+   D
Sbjct: 245 TSGRGSFLTRAATHIENVTARKKAIVVTELPFMVGPEKVLERISEGIKNKKLEGISGAID 304

Query: 302 ESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G     +L QL++YT L+  F++N VAL   +P    +  +L  
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPRAVLGQLFKYTPLEDSFTINNVALVNGRPHTMGIKELLSV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S + ++A+  LM  
Sbjct: 365 WIEHRRTVVTRRSEYRKRKAEERLHLVDGLLLALIDIDEVIDVIRTSDDADSAKTRLM-- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L ++Q + IL+LRL RLT + R ++ +E + L
Sbjct: 423 ------------------------AVFDLDQIQAQYILDLRLRRLTKMSRIELESERDDL 458

Query: 481 GIEIKECLDILSS-RSRLLGIIKQELLSVKDELDTPRRTRIVE 522
              I +   ILSS + R + +IK    +V+ E DTPRRT +++
Sbjct: 459 QRLIAQLDQILSSTQVRDMEVIKSMDRAVQ-EWDTPRRTVLLD 500


>gi|56159830|gb|AAV80726.1| gyrase subunit A [Bacillus subtilis]
 gi|56159838|gb|AAV80730.1| gyrase subunit A [Bacillus subtilis]
 gi|56159840|gb|AAV80731.1| gyrase subunit A [Bacillus subtilis]
          Length = 318

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/317 (59%), Positives = 255/317 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|256370589|ref|YP_003108414.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009381|gb|ACU52741.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 519

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/505 (41%), Positives = 325/505 (64%), Gaps = 29/505 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S+++ +E++ SY+ Y+++VI+ RA+PD +DGLKPV RR+L+GM + G   N  Y K A
Sbjct: 4   IISINLEEEIKASYIDYSMSVIVSRALPDGKDGLKPVQRRVLYGMYEQGAFKN--YRKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++++Y+A+ RMAQ WSLR  LI+GQGNFGS+D DPPAA RYTE +L
Sbjct: 62  RIVGDVLGKYHPHGDSSVYEAIVRMAQSWSLRYPLIDGQGNFGSIDNDPPAAMRYTEIKL 121

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           QK +  +L DL KDTVD + N+D S +EP+VL    PN+L+NG  GIAVG+ATN+P HN+
Sbjct: 122 QKVSEEMLFDLKKDTVDIKLNFDSSCKEPIVLPTVIPNLLINGSSGIAVGIATNMPPHNI 181

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E ++   + I+N DI ++ LM+ I  PDFPTG +I G  G+K A+ TGRG I++R    
Sbjct: 182 VESINAICSYIENTDISIEELMKDIIAPDFPTGGIIYGYEGVKKAFLTGRGKILLRSKVF 241

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            EK  G    +++ EIPYQ+ K  +++K  +L++E+++  I+ +RDESDR G R+V  LK
Sbjct: 242 FEKIGGCY-CLIIKEIPYQIRKEDLIKKTLKLIKEEKLEGISKIRDESDRTGMRIVFYLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++L  +++YT L++ FSVN +AL   KP +  L  I+K FV  R EV++RR+K+
Sbjct: 301 KNVNKHLLLKNIFKYTPLETTFSVNNIALVNGKPVQLNLKDIIKHFVNHRHEVLIRRSKF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A+++AH++ G  + + N++ V+ +I+ S     A+++L+ + +N            
Sbjct: 361 DLKNAKEKAHIIKGFYLVLDNIETVIELIKSSKEKNHAKKKLLIK-FN------------ 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL L+L  LT L  + I+ +   L  +I    +I +   
Sbjct: 408 -------------LSEKQVKAILNLKLNSLTKLENEKIKKDYLKLKKDISYYTNIKTDIF 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI 520
               IIK+EL  +K++    RRT+I
Sbjct: 455 FQKKIIKKELKQIKEKYGDLRRTQI 479


>gi|160905644|gb|ABX52380.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905662|gb|ABX52389.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV DNPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSDNPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 801

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/731 (34%), Positives = 419/731 (57%), Gaps = 42/731 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I ++S+   + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  +++ Y K
Sbjct: 5   QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ R++Q+W LR  LI+ QGN GS+DGD  AA RYTE 
Sbjct: 65  SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L+ + K TVD+  N+D + +EP+VL +  PN+L+NG  GI+ G AT IP H
Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           + GEV+D  +  I      +D L+  ++GPDFPTG V+ G  GIK A+ TGRG ++IR  
Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGGVVQGLDGIKKAFETGRGKVIIRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G R+QI++TE+PY+VNKA +++++ EL  ++++  +A++RDE+DR G RVVIE
Sbjct: 245 ATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ +L+   + T LQ  ++ NMVA++   P +  ++ +L A+++  ++VV+RRT
Sbjct: 305 LKKEADAEGVLHFYLKQTDLQIAYNYNMVAIHERTPRQMGVLALLDAYLSHVKDVVIRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L +A+ R  V+  L  A++ LDE + +IR + N   A+ +L++R             
Sbjct: 365 SFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIER------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  A++ L+L RLT     ++++E   L  EI     IL+ 
Sbjct: 412 -------------FSFTDRQAEAVVMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILND 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRV 551
                 +I +EL  +K+++   RR+ +   +  L ++ E  I  E+ +V VS  GY+KR 
Sbjct: 459 EKTRNRLIIKELTVLKEQVADKRRSTVEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRS 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +      R  G       M+++D +       T   V+ ++  G      V +LP    
Sbjct: 519 SM------RSFGATNDLPEMKEQDRLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKW 572

Query: 612 QARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ + N++ L+ G+RI ++ +    DE+S    + +F T+ G V+R+KLSD+    +
Sbjct: 573 KDGGQHVANLVPLDPGDRILSVDLVRTFDETS----HCLFVTRQGMVKRSKLSDYNAQRK 628

Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S  +  ++L + DE+L  +  T +  + LTT+ G  + F    + V  G  + GV+ I+L
Sbjct: 629 SKPLQGVRLRADDEVLYAKISTGQEQLFLTTQHGFGLWFTEDDVPV-VGVRAAGVKAINL 687

Query: 730 AKGDQVISMAI 740
              D V++ AI
Sbjct: 688 RDQD-VVAGAI 697


>gi|218133090|ref|ZP_03461894.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991963|gb|EEC57967.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/749 (34%), Positives = 413/749 (55%), Gaps = 53/749 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++ MQ SY+ Y+++VI  RA+PD RDGLKPV RR+L+ M Q+G+ ++K + K A
Sbjct: 12  IVKTEYSELMQKSYIDYSMSVITARALPDARDGLKPVQRRVLYAMDQLGLNYDKPHRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  + QD+   + L++G GNFGS++GD  AA RYTE +L
Sbjct: 72  RIVGDTMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEAKL 131

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K      L DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGM TNIPTHN
Sbjct: 132 KKFTQDVYLADLDKDVVDFIPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTNIPTHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD C A +D+ +I  + LME + GPDFPTG +++ ++ +   Y +G G I +RG  
Sbjct: 192 LGEVVDACCAYMDDENITTEGLMEYVIGPDFPTGGLVVNKSELPAIYESGTGKIKLRGKV 251

Query: 255 HIEKTS--GDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E  +   +R+++V+TEIPY +   N    L  + +LV  K+  DI D+ +ES ++G R
Sbjct: 252 VFEPAAKKSERDKLVITEIPYTMIGANIGKFLSDVIDLVETKKTSDIVDISNESSKEGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELKR A  + + N LY+ T L+  F VNM+A+   KPE   L  I+K  + F+ ++ 
Sbjct: 312 IVLELKRNADVEKLKNMLYKKTKLEDTFGVNMLAIVDGKPETLGLKSIIKHHIDFQYQLA 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+   LL + RD   +  GL  A   +D ++ I+R   N   A+  L+       ++KD
Sbjct: 372 TRKYNTLLARERDNKEIQEGLIKACDIIDLIIEILRGCKNRSQAKDCLVN-----GNVKD 426

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I+   ++S    S   ++ +E Q  AILELRL RL GL   +++ +      +I E   
Sbjct: 427 -INFKSETSRKAASG--LHFTERQASAILELRLYRLIGLEILELQKQYEQTLKKIAEYEK 483

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+ +  +IK++L ++K E   PR+T I +    + +E+ +  +++V  +   GY K
Sbjct: 484 ILGSRTAMKNVIKKDLQAIKKEYALPRKTVIEDAKAAVFEEEKVKEQEVVFIMDRFGYSK 543

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            + ++ Y         R+   + +E+    +F       +  F+  G +++ KV  LP  
Sbjct: 544 TIDIAAYE--------RNMEAVHNENKY--IFKCMNTDKIYIFTDNGNLHQIKVMDLPFT 593

Query: 610 SPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             + +G  + N+ + +  GE I     F     +     ++F TK G ++    S+F + 
Sbjct: 594 KFRDKGVPIDNVGNYDSSGENIV----FLSAAGNITGCKLLFVTKQGMMKLVDTSEF-EA 648

Query: 669 NRSGKIAMKLDSRDEILSV----------------------ETCTQENDILLTTKLGQCV 706
           ++    A KL   D I ++                      E      ++++ T+ G  +
Sbjct: 649 SKKTVAATKLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQNVVVRTENGVFL 708

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +FP++ I     +N+VGVRGI L K D V
Sbjct: 709 KFPLTEIPQ-KKKNAVGVRGIKLVKDDTV 736


>gi|237732925|ref|ZP_04563406.1| DNA topoisomerase IV subunit A [Mollicutes bacterium D7]
 gi|229383994|gb|EEO34085.1| DNA topoisomerase IV subunit A [Coprobacillus sp. D7]
          Length = 614

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 245/649 (37%), Positives = 372/649 (57%), Gaps = 49/649 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G V+G 
Sbjct: 7   MGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTVGNVIGN 66

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA+ R++QDW +R+ L++ QGN GS+D DP AA RYTE RL   A  LL 
Sbjct: 67  YHPHGDISVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAIAVELLK 126

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP HNL EV+D  + 
Sbjct: 127 DLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEVIDATIH 186

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--EKTSGD 262
            I  P+  L+ LME I+GPDFPTGA++ G+ GI NA+ +GRG +++R  S +  EKT   
Sbjct: 187 RIKYPNCSLEKLMEFIKGPDFPTGAIVEGKQGILNAFKSGRGKVIVRSTSEMIEEKTMN- 245

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV+TEIPY+VNKA ++ KI E+   + I  I ++RDESDR G R+VI+LK+  +   
Sbjct: 246 --KIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLKKDINVQN 303

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            LN LY+ T LQ  ++ NMVA+   +P    +I IL  ++A + +VV R + + LNKA +
Sbjct: 304 TLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRSSIHDLNKANE 363

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H++ GL  A++ LDEVV+ IR S +   A+  L+++                      
Sbjct: 364 RKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYG-------------------- 403

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                  SE Q  AI+ L+L RLT      + NE   L   I    +IL+S   L  +I 
Sbjct: 404 ------FSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLRKVII 457

Query: 503 QELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
            +L  +K +   PR ++I + +  + ++++  I+ ED+ V+++  GY+KR+         
Sbjct: 458 DQLKGIKKKYPMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRI-------SN 510

Query: 561 RGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           R  K   G+    ++ D++  ++  +T   +L F+  G      V ++     +  GK +
Sbjct: 511 RSIKASEGIPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHV 570

Query: 619 INILSLNQGERIT-TIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDF 665
             ++ LN GE+I  TI+        +N  LYV+ ATK  + + ++   F
Sbjct: 571 SYLVKLNAGEKIIGTILV-----KDFNLPLYVMLATKKWSNQTDEFKRF 614


>gi|56159828|gb|AAV80725.1| gyrase subunit A [Bacillus subtilis]
          Length = 316

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 254/316 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVNMVALNGYKPE 350
           + F +N++AL   +P+
Sbjct: 301 TSFGINLLALVDGQPK 316


>gi|296454306|ref|YP_003661449.1| DNA gyrase/topoisomerase IV subunit A [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183737|gb|ADH00619.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 909

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/508 (42%), Positives = 318/508 (62%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ +PD  L+ LM  + GPD+PTG  I+GR GI+ AYA GRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYANGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM                
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKTRLM---------------- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 424 ----------AVFDLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 898

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 410/727 (56%), Gaps = 49/727 (6%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K Y K AR+ GEV+GKYH
Sbjct: 18  NRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYH 77

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RYTE RL K ++ LL+DL
Sbjct: 78  PHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKISNLLLEDL 137

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+P HNL E++D  + +I
Sbjct: 138 EKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDATINII 197

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I    H EK +     I
Sbjct: 198 KNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSKWHQEKNN-----I 252

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+VIEL   A+ + +   
Sbjct: 253 VIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDETDRKGLRIVIELNEKANLETVRKF 312

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L++ T L   ++ N + +   +P++  LI I+KA+++  +EV ++RT++ LNKA  R  +
Sbjct: 313 LFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEI 372

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL  A++ LDEV+++IR S N   A   L+                           T
Sbjct: 373 VNGLIKALSILDEVIKVIRKSENRLDAINNLV--------------------------IT 406

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              +  Q  AI+++RL RLT    + +  E   L  +IK+  +IL++   L   I   L 
Sbjct: 407 FKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLE 466

Query: 507 SVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
             K +    R+++ VE L   LD++ ++ I+ +++ + +S  GY+K +  ++        
Sbjct: 467 EAKKQFGIKRKSQ-VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSS 525

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
            G+     +  D      + S    ++  S     Y   ++++     + +G  + ++ +
Sbjct: 526 FGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVAT 580

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSR 681
               E I   +   E  +S  +L +V  +K+G ++R ++SD      N+S KI MK+   
Sbjct: 581 TQPNETIINALVIKEFINSTQHLLLV--SKNGLIKRTQISDLETKIFNKSFKI-MKISDD 637

Query: 682 DEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           D ++  +  + +     + TK G  VR+ I  I V     S GV+  +L K D +IS A+
Sbjct: 638 DSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPV-QSTISKGVKAANL-KDDYIIS-AL 694

Query: 741 VLHADAD 747
            L  + D
Sbjct: 695 SLQNNKD 701


>gi|56159864|gb|AAV80743.1| gyrase subunit A [Bacillus sp. NRRL B-23970]
          Length = 323

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/315 (60%), Positives = 251/315 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 183 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 242

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 243 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 302

Query: 330 YTSLQSLFSVNMVAL 344
            T+LQ+ F +NM+AL
Sbjct: 303 QTALQTSFGINMLAL 317


>gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
 gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
          Length = 752

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 271/728 (37%), Positives = 389/728 (53%), Gaps = 65/728 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H       E   I    +++ +   YL YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MTVHTAPPGGAEPDRIIDEPLSEALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M +       KCA++ GEVMG YHPHG+ AIYD L RMAQ ++ R  L++GQGNFG++
Sbjct: 61  REMRLNPENAARKCAKVVGEVMGGYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L  AA  LLD + +D VDF+P YDGS  EPVVL A +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEAKLTAAATLLLDGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN GE++D C+ +++NP+   +ALM  ++GPDFPTG VI+  R  +  
Sbjct: 181 GIAVGMATSIPPHNAGELIDACLLLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            YATGRG + +R     E       QIVVTEIPYQV KA ++EK+AEL+  K+   + D+
Sbjct: 241 TYATGRGGVRVRARWTKEDLGKGTYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDV 300

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGI 357
           RDES  +  R+V+E K R   A+V++  L++ + L++ FSVN+  L+    P    L   
Sbjct: 301 RDES-AEDVRLVLEPKSRNVEAEVLMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQA 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LKAF+  R EV+VRR ++ L K   R H+L GL IA  NLDEV+RI+R+   P+      
Sbjct: 360 LKAFLDHRREVLVRRARHRLEKIEARLHILDGLMIAYLNLDEVIRIVRYEDKPK------ 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     + LI+             T  LSE+Q  AIL  RL +L  L   +IR E 
Sbjct: 414 ----------EKLIE-------------TFSLSEIQADAILNTRLRQLAKLEEMEIRREH 450

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEG-LLDMED--EDC 532
             L  E    L +L+S +    ++ + L  VK EL     RR+   E   +D E   E  
Sbjct: 451 AELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGKLNDRRSTFGEAPQVDAEAAIEAM 510

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS 588
           IVRE + + +S  G++            R  KGR    S +  ++ D +  L    T   
Sbjct: 511 IVREPITIILSERGWI------------RAAKGRIEDPSELKFKEGDKLQFLVPAETTDK 558

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F+S G  +     +L    P ARG      L ++  +++  +  FP    +      
Sbjct: 559 LLIFASDGRFFTLGCDKL----PGARGHGEPLRLMIDLDDKVGIVDVFPHKPGAKR---- 610

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQC 705
           + A+K G        + I   R+GK  +       + E  +V      + I +    G+ 
Sbjct: 611 LLASKQGYGFILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGKI 670

Query: 706 VRFPISAI 713
           + FP++ +
Sbjct: 671 LVFPLAEL 678


>gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 898

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 410/727 (56%), Gaps = 49/727 (6%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K Y K AR+ GEV+GKYH
Sbjct: 18  NRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVVGEVIGKYH 77

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RYTE RL K ++ LL+DL
Sbjct: 78  PHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKISNLLLEDL 137

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+P HNL E++D  + +I
Sbjct: 138 EKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDATINII 197

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I    H EK +     I
Sbjct: 198 KNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVIISSKWHQEKNN-----I 252

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+VIEL   A+ + +   
Sbjct: 253 VIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKANLETVRKF 312

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L++ T L   ++ N + +   +P++  LI I+KA+++  +EV ++RT++ LNKA  R  +
Sbjct: 313 LFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFNLNKANLRLEI 372

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL  A++ LDEV+++IR S N   A   L+                           T
Sbjct: 373 VNGLIKALSILDEVIKVIRKSENRLDAINNLV--------------------------IT 406

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              +  Q  AI+++RL RLT    + +  E   L  +IK+  +IL++   L   I   L 
Sbjct: 407 FKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLE 466

Query: 507 SVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
             K +    R+++ VE L   LD++ ++ I+ +++ + +S  GY+K +  ++        
Sbjct: 467 EAKKQFGIKRKSQ-VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSS 525

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
            G+     +  D      + S    ++  S     Y   ++++     + +G  + ++ +
Sbjct: 526 FGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVAT 580

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSR 681
               E I   +   E  +S  +L +V  +K+G ++R ++SD      N+S KI MK+   
Sbjct: 581 TQPNETIINALVIKEFINSTQHLLLV--SKNGLIKRTQISDLETKIFNKSFKI-MKISDD 637

Query: 682 DEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           D ++  +  + +     + TK G  VR+ I  I V     S GV+  +L K D +IS A+
Sbjct: 638 DSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPV-QSTISKGVKAANL-KDDYIIS-AL 694

Query: 741 VLHADAD 747
            L  + D
Sbjct: 695 SLQNNKD 701


>gi|284803500|emb|CBJ15406.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|284803669|emb|CBJ21240.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 312

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/312 (61%), Positives = 250/312 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I 
Sbjct: 121 YQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTA 300

Query: 333 LQSLFSVNMVAL 344
           LQ+ F +N++AL
Sbjct: 301 LQTSFGINLLAL 312


>gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
 gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
          Length = 737

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/551 (41%), Positives = 338/551 (61%), Gaps = 41/551 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  V +ID+P  ++  +M  I+GPDFPTG +I+ +  + N AY+TGRGS  +
Sbjct: 182 PHNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFRM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---MMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRV 551
             S +G+V+ +
Sbjct: 512 ICSKMGWVRSL 522


>gi|56159866|gb|AAV80744.1| gyrase subunit A [Bacillus sp. NRRL B-23982]
          Length = 320

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/315 (60%), Positives = 251/315 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 183 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 242

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 243 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 302

Query: 330 YTSLQSLFSVNMVAL 344
            T+LQ+ F +NM+AL
Sbjct: 303 QTALQTSFGINMLAL 317


>gi|56159858|gb|AAV80740.1| gyrase subunit A [Bacillus sp. NRRL B-23980]
          Length = 327

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 256/323 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPERFTL 354
           +LQ+ F +N++AL   +P+  +L
Sbjct: 301 ALQTSFGINLLALVDGQPKVLSL 323


>gi|238063682|ref|ZP_04608391.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
 gi|237885493|gb|EEP74321.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
          Length = 829

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 276/759 (36%), Positives = 400/759 (52%), Gaps = 68/759 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK AR+ G
Sbjct: 27  PLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYSMHEAGHRPDRAHVKSARVVG 86

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMG+YHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA RYTE R+   A
Sbjct: 87  DVMGRYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEARMSHEA 145

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L+ +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+  HNL EVV
Sbjct: 146 MLLVGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLAEVV 205

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
                +I++PD DLD LME + GPD PTG V+LG   ++ AY TGRG + +RG   I   
Sbjct: 206 SAARWLINHPDADLDKLMEFVPGPDLPTGGVLLGLDEVRRAYETGRGVVRMRGRVEIGPL 265

Query: 260 SGD--REQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
            G   R+ I V E+PY V    ++  +  E+ + KR+  IAD++D +DR+ G R+VIE K
Sbjct: 266 EGSRGRQAITVVELPYGVGAEKVIAAVTNEVNKTKRLTGIADVKDLTDRENGTRLVIECK 325

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
            G +   +L  LYR T L+  F VN + L   +P+   L  +L+ F+  R +VV RR+ Y
Sbjct: 326 VGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPQTLGLKALLEVFLRHRYDVVTRRSAY 385

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              K ++R H++ GL IA+ ++D+VVR+IR S + + A+  LM++               
Sbjct: 386 RRRKRQERLHLVDGLLIALLDIDKVVRLIRSSDDAQAAKDGLMRQ--------------- 430

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q   IL+  L RLT   R ++  E   L  EI +   IL    
Sbjct: 431 -----------FKLSDIQASYILDTPLRRLTKFDRIELEAEQEQLRKEIAQLSTILDDEK 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTV 542
            L  ++  EL +V  +  T RRT +V+             G L++ D+ C       V +
Sbjct: 480 VLRKVVSDELAAVVKKFGTERRTTLVDGDLKEVLAASAPAGPLEVADDPC------QVIL 533

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G V R   +    +   G+ RSG V  D   V  L   +    VL  +S G  +K  
Sbjct: 534 SATGLVART--AAESEEAAEGRRRSGRVKHDA--VRALVHSTARGRVLLVTSAGRAFKID 589

Query: 603 VWRLPIGSPQA------RGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHG 655
           V  LP+   QA       G +   ++ L  GE +  + P  P  E S     +   T+ G
Sbjct: 590 VLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLGPTAEGSPG---LALGTRQG 646

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIR 714
            V+       ++ +    + ++    DE++        ++ L   +     +RFP S +R
Sbjct: 647 VVKVCAPDWPVRSDEFEVVGLR--EGDEVVGATWLADGSETLAFVSSEASLLRFPASLVR 704

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
              G    G+ GI+L  G +V+    V   D  + E + 
Sbjct: 705 P-QGPKGGGMAGINLPAGARVVFFGAVREDDPSHGEPMV 742


>gi|313638150|gb|EFS03408.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 507

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/529 (40%), Positives = 334/529 (63%), Gaps = 28/529 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++   SL  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSXXKSLAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMV 539
             + L+ ++K EL  +K +  TPRRT +   +  + ++ E  +  ED++
Sbjct: 459 DEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVI 507


>gi|160905544|gb|ABX52330.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905546|gb|ABX52331.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905548|gb|ABX52332.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905550|gb|ABX52333.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905554|gb|ABX52335.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905562|gb|ABX52339.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905564|gb|ABX52340.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905568|gb|ABX52342.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905592|gb|ABX52354.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905594|gb|ABX52355.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905596|gb|ABX52356.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905598|gb|ABX52357.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905600|gb|ABX52358.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905602|gb|ABX52359.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905604|gb|ABX52360.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905620|gb|ABX52368.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905622|gb|ABX52369.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905624|gb|ABX52370.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905636|gb|ABX52376.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905638|gb|ABX52377.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905640|gb|ABX52378.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905642|gb|ABX52379.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905646|gb|ABX52381.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905648|gb|ABX52382.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905650|gb|ABX52383.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905656|gb|ABX52386.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905658|gb|ABX52387.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905660|gb|ABX52388.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905670|gb|ABX52393.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905676|gb|ABX52396.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905678|gb|ABX52397.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905680|gb|ABX52398.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|167746703|ref|ZP_02418830.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
 gi|167653663|gb|EDR97792.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/758 (33%), Positives = 410/758 (54%), Gaps = 47/758 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EHII ++            ++ MQ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MAEHIIRAE-----------FSEVMQKSYIDYAMSVICARALPDIRDGLKPVQRRVLYAM 49

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  ++ + K ARI G+ MGKYHPHG+++IY++L  M Q++   + L++G GNFGS+
Sbjct: 50  DELNLRHDRPHRKSARIVGDTMGKYHPHGDSSIYESLVVMEQEFKKGMPLVDGHGNFGSI 109

Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RL+K      L DL K+ VDF  N+D + +EP VL  R PN+L+NG 
Sbjct: 110 EGDGAAAMRYTEARLKKFTQEVYLADLDKNVVDFISNFDETEKEPEVLPVRVPNLLINGA 169

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM T+IP HNLGEVVD  +A +++  +  + L+  I+GPDFPTG +++ +  IK 
Sbjct: 170 EGIAVGMTTSIPPHNLGEVVDAMIAYLEDESVANEDLLTYIQGPDFPTGGLVVNKKDIKT 229

Query: 240 AYATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIV 294
            Y  G G + +RG    E  K  G+++++V+TEIPY +   N    L  +  LV  K+  
Sbjct: 230 IYTEGSGKLKLRGKVVFEPGKKRGEKDKLVITEIPYTMIGANIGKFLSDVVNLVESKKTT 289

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           DIAD+ +ES ++G R+V+ELK+G   + + N LY+ T L+  F VNM+A+   +PE  +L
Sbjct: 290 DIADISNESSKEGIRIVLELKKGTDIERLKNLLYKKTKLEDTFGVNMLAIVDGRPETLSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             I+     F   +V R+ + LL+K  D+  V  GL  A   +D ++ I+R S N + A+
Sbjct: 350 RDIIAHHTEFHYGLVKRKYQTLLSKLYDQREVKEGLIKACDMIDLIIEILRGSKNLKEAK 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L +        K        SS ++     +  +E Q  AIL+LRL +L GL    +R
Sbjct: 410 ACLTKGEVGNIRFK--------SSESMIEACKLSFTEKQAEAILDLRLGKLIGLEILALR 461

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E   +   I E  DIL +   +  ++KQ+L+ +K E    RRT + +G   + +E+ + 
Sbjct: 462 EEYEEIVANIAEYEDILHNPVSMQRVMKQDLMKIKKEYQRERRTVVEDGAEAVFEEEPLK 521

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E +   +   GY K    + Y+  +           RD  ++           +  F+ 
Sbjct: 522 EEQVYFVMDRFGYAKTFDKATYQRNQENAS-------RDYKYIVPCM---NTDKICIFTD 571

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +++ KV  +P G  + +G  + N+ + +  +    I     +  + ++L+  FAT+ 
Sbjct: 572 TGVMHQIKVLDIPAGKYKDKGTPIDNLGNYDSSDE-AIIAVLAAEAMTHDSLF--FATEQ 628

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------ILLTTKLGQCVRF 708
           G ++    ++F Q+ +    A KL   D +LSV+    E        ++L TK G  +RF
Sbjct: 629 GMLKIVSGTEF-QVTKRTVSATKLSDGDALLSVKPLKTEGGLIKPDMVILETKEGVFLRF 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            +  +     + +VGVRGI L K D ++    ++ AD 
Sbjct: 688 SLEEVPE-KKKGAVGVRGIKLNK-DDILLHTYLMEADG 723


>gi|160905570|gb|ABX52343.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITISE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + I++TS  +E+IVVTEIPYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVTEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 781

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 260/756 (34%), Positives = 402/756 (53%), Gaps = 61/756 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWN 68
           E +E  I    I+ E +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M + + +  +
Sbjct: 3   ENQEDRIQFREISSETRRRYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEELRLMAD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K  KCA+ISG+  G YHPHGN ++YD L R+AQD++LR  L++GQGNFGS+ G P AAE
Sbjct: 63  AKTRKCAKISGDTTGNYHPHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGLPAAAE 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L+++L  DTV+ RPNYDG+ +EPVVL  R+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEARLTGIAEQLMNELRFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           N+P HNL EV++ C+ +I NP+     L++ I+GPDFP G  +I  R  +   Y  GRG+
Sbjct: 183 NMPPHNLKEVLEACIHLITNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYEEGRGA 242

Query: 248 IVIRGVSHI--EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
             +R    +  EK +   +++V+  +PY V    +L +I  ++  +++  + +  DE+ D
Sbjct: 243 FKVRAEWRMDKEKRAEVEDRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAADETDD 302

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILK 359
           + G RVV+ELK+G+  + ++  LY+ T L+  F+ N   L         P R  L  +L 
Sbjct: 303 KHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPLHRLLG 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+ FR +VV +R ++ L++ + R H+L GL I    +D+ ++IIR S     A  +LM 
Sbjct: 363 EFLKFRLKVVKKRFQFQLDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDACDKLM- 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E QT AILE++L R++ L  D +  ELN+
Sbjct: 422 -------------------------AAFPLDEPQTMAILEMQLYRISQLEIDTVLAELNT 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVRED 537
              E      IL+   R+  +I+ EL  + ++    RRT +   + + + ++   IVRE+
Sbjct: 457 KQKEADRITRILAKDDRIWNVIEGELRELSEQFGDKRRTTLGSSDEVTEFDESHYIVREN 516

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRS--GVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
             V +S  G++KRV           G+ +S     +R+ D V D+   ST   V+FF+S 
Sbjct: 517 TNVVLSKDGWIKRV-----------GRLQSVESTRVREGDQVLDVLPGSTVDHVIFFASD 565

Query: 596 GFVYKEKVWRLPI----GSPQARGKALIN----ILSLNQGERITTIMPFPEDESSWNNLY 647
           G  Y   + ++P+    G P  +     +    I ++    R T +     + +     +
Sbjct: 566 GIAYTMPISQVPVSSGYGEPLTKHYKFKDGVQVIAAVTTDPRFTAVAEETAEGAEPAPPH 625

Query: 648 VVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +   T  G V R  L  F     RSG+   KL   D +  VE    +  + L T+  + +
Sbjct: 626 LFVTTAQGQVMRVPLQPFRTASTRSGRKFCKLQEGDVVAKVELIVDQTSVFLVTREARLI 685

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            F +  I V +G    GVRGI L + ++ + +   L
Sbjct: 686 HFSLEEIPVLSGAGK-GVRGIRLEEKEKDLVLGAAL 720


>gi|300783222|ref|YP_003763513.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299792736|gb|ADJ43111.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 828

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 281/758 (37%), Positives = 402/758 (53%), Gaps = 74/758 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E+++SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G      YVK +R+ G+VMG
Sbjct: 31  EIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILYSMNENGYRPTHAYVKSSRVVGDVMG 90

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA RYTE R+   A  L+
Sbjct: 91  KYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEARMSPEAMQLV 149

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+DTVDFRPNYDGS +EP VL A +PN+LVNG  GIAVGMATN+  HNLGEV+    
Sbjct: 150 GELGEDTVDFRPNYDGSLEEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEVIAAAR 209

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG---VSHIEKTS 260
            +I +P   LD LME + GPD PTG  +LG   ++ AY TGRG + +R       +E + 
Sbjct: 210 WLITHPSATLDKLMEFVPGPDLPTGGSLLGLDEVRRAYETGRGVVRMRANCETGPLEGSR 269

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIELKRGA 318
           G R+ I VTE+PY V    ++EKI  E+ + KR+  IAD++D +DR+ G R+VIE K G 
Sbjct: 270 G-RQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLVIECKVGV 328

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+  R +VV RRTKY   
Sbjct: 329 NPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKELLEVFLRHRYDVVTRRTKYRRR 388

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  +R H++ GL IA+ N+D+V+R+IR S N + A+  LM R                  
Sbjct: 389 KREERLHLVDGLLIALLNIDKVIRLIRESENAQAAKDGLMTR------------------ 430

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q   IL+  L RLT   R ++ +E   L  EI E   IL   S L 
Sbjct: 431 --------FKLSEIQATYILDTPLRRLTKYDRLELESEQERLREEIAELSKILDDESVLK 482

Query: 499 GIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTVSHL 545
            ++  EL  +  +  T RRT +++             G L++ D+ C       V +S  
Sbjct: 483 KLVSAELAKIAKDFPTERRTALIDGDLKEVLAASKPSGPLEVADDPC------QVILSAT 536

Query: 546 GYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G V R       A   +RR G+ +        D V  L   +    +L  +S G  +K  
Sbjct: 537 GLVARTAAESEEATETRRRNGRVK-------HDAVAALVHTTARGQILLVTSRGRAFKTD 589

Query: 603 VWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP+   QA       G A   ++ L +GE +  I P  E  +    L     T+ G 
Sbjct: 590 VLPLPVLPEQAGTVSLRGGMAAKELVPLEKGETVVGIAPLGEQAAGSPGL--ALGTRAGV 647

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRV 715
           V+       ++ +    I++K    DE++     T  ++ L   +     +++  S +R 
Sbjct: 648 VKICSPEWPVRSDEFEVISLK--DGDEVVGATWLTDGSETLAFVSSEASLLKYAASLVRP 705

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             G    G+ G++L+    V+    V   D ++ E + 
Sbjct: 706 -QGLKGGGMAGMNLSGDASVVFFGAVRTDDDEHGEPMV 742


>gi|56159846|gb|AAV80734.1| gyrase subunit A [Bacillus sp. NRRL B-23964]
          Length = 327

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/323 (59%), Positives = 256/323 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TNHELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPERFTL 354
           +LQ+ F +N++AL   +P+  +L
Sbjct: 301 ALQTSFGINLLALVDGQPKVLSL 323


>gi|160905606|gb|ABX52361.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905668|gb|ABX52392.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905572|gb|ABX52344.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905578|gb|ABX52347.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905584|gb|ABX52350.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905634|gb|ABX52375.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/309 (60%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|260906706|ref|ZP_05915028.1| DNA topoisomerase IV subunit A [Brevibacterium linens BL2]
          Length = 915

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 268/746 (35%), Positives = 401/746 (53%), Gaps = 85/746 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V ++ EM++S+L YA++VI  RA+PD RDGLKPV RRI++ M  MG+   + +V
Sbjct: 3   EGRVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHV 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K +RI G+VMGK HPHG+ AIYDAL R++Q + +R+ L++G GNFGS+D D PAA RYTE
Sbjct: 63  KSSRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  A+  ++  L +D VDF  NYD +  +P VL + +PN+L+NG  GIAVGMATN+  
Sbjct: 122 ARLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN GEV+  C  +I NP+  L  LM  I GPD PTG  I+G  G++ AY TGRG+   R 
Sbjct: 182 HNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPTGGRIIGLDGVREAYETGRGTFRTRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
              IE  +  R+ IVVTE+PY V    ++ K+ + V  K++  IA + D SDR+ G R+V
Sbjct: 242 TVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGMRLV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I +K G + + +L +LYR T L+  FS+N V L   +P    L  +L  ++A R +V+ R
Sbjct: 302 IGIKNGFNPEAVLAELYRQTPLEESFSMNNVCLVDGQPRTLGLRELLTVYLAHRIDVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+DR H++ GL IA+ ++DEV+++IR S +  TAR  LM             
Sbjct: 362 RTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLMD------------ 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q   IL+L+L RLT   R ++  E + L  +I    D+L
Sbjct: 410 --------------VFELSELQATYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL------------DMEDEDCIVREDMV 539
           +  ++L  ++  EL +  + + +PRRT ++EG +            D++  D   R    
Sbjct: 456 ADEAKLRELVATELEATAEAIGSPRRTVLIEGSMKELSAKGKKAQADLKIADAPCR---- 511

Query: 540 VTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           V +S  G + R     PL      +R GK  S   +R E       + +T   V   +S 
Sbjct: 512 VLLSTSGRIARTADASPL------QRVGKRSSHDALRSE------IVSTTQGKVGAVTST 559

Query: 596 GFVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G ++   V  LP   P A       G  + + ++L + E +  ++    +         V
Sbjct: 560 GRLHMVDVVDLPALPPAATRPNVAGGVKIADYVTLEKNETVLGLIDLDRE--------FV 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI-----LLTTKLGQ 704
             T  G V+R  +S   + N+S   A+ L  +D ++ V    Q  DI     +  T   Q
Sbjct: 612 LGTAGGVVKR--VSVAARPNKSEWEAITLKGKDSVIGV---AQPKDIDESLAVFVTSNAQ 666

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLA 730
            + F  S +R   G N+ GV G+ +A
Sbjct: 667 LLAFDASGLRA-QGWNASGVAGMKVA 691


>gi|160905566|gb|ABX52341.1| gyrase subunit alpha [Bacillus vallismortis]
          Length = 309

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGL+PVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLQPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQD 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|189439166|ref|YP_001954247.1| DNA topoisomerase IV subunit A [Bifidobacterium longum DJO10A]
 gi|239621283|ref|ZP_04664314.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132598|ref|YP_003999937.1| para [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691358|ref|YP_004220928.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427601|gb|ACD97749.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum DJO10A]
 gi|239515744|gb|EEQ55611.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773543|gb|ADQ03031.1| ParA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456214|dbj|BAJ66836.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 909

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 321/508 (63%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 426 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|269219416|ref|ZP_06163270.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211209|gb|EEZ77549.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 558

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 321/538 (59%), Gaps = 40/538 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + +  + +T EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M QMG+  ++
Sbjct: 6   EPSAEKVIDIDVTQEMRTSFLEYSYSVIYARALPDARDGLKPVQRRILFQMGQMGLRPDR 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK +R+ G+VMG+ HPHG+ AIYDA+ R+AQ ++LRL +I+G GNFGS+D D PAA R
Sbjct: 66  GHVKSSRVVGDVMGRLHPHGDVAIYDAMVRLAQPFTLRLPMIDGHGNFGSLD-DGPAAPR 124

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+  AA  ++  L +DTVD  PNYD + ++P VL A  PN+LVNG  GIAVGMATN
Sbjct: 125 YTEVRMAPAAMAMISSLDEDTVDMAPNYDNTLEQPEVLPAAIPNLLVNGSSGIAVGMATN 184

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EV+     ++ NPD DL+ +M  + GPD P G  I+G  GI+ AYA+GRG   
Sbjct: 185 MPPHNLVEVIAAARCLLANPDADLEEIMRFVPGPDLPEGGKIVGLEGIREAYASGRGIFK 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
            R  +HIE  +  ++ IV TE+PY V    ++EK+ + +  K++  +  +++ +DR  G 
Sbjct: 245 TRATAHIENVTARKKGIVFTELPYLVGPEKVIEKLKDAINAKKVQGVTGIQNLTDRHHGM 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+K G + + +L QLYR+T L+  F +N VAL G +P+   LI +L+ F+  R +V
Sbjct: 305 RLVVEVKNGFNPEAVLLQLYRHTPLEDSFGINNVALVGGQPQTLGLIELLRVFLDHRLDV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR+++ L+KA    H++ GL  AV N+DEV+ +IR S +  TAR  LMQ         
Sbjct: 365 TRRRSRFRLDKASRELHLVDGLLAAVVNIDEVIALIRSSDDAATARTRLMQ--------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q   ILELRL RLT     ++    + L   I +  
Sbjct: 416 -----------------VFDLTEPQAEYILELRLRRLTKYSVIELEQRRSELLEAIADLE 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG------------LLDMEDEDCIV 534
           D+L+S  RL  ++  EL  V     TPRRT ++E              L++ D+ C V
Sbjct: 459 DVLNSPERLRDLVSAELDEVARAHGTPRRTVLLESDGATEAGSSAALPLEVADDPCFV 516


>gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
 gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
          Length = 802

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 274/752 (36%), Positives = 412/752 (54%), Gaps = 60/752 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKK 70
           E   I  V I+D  +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M   + +  N K
Sbjct: 20  ESDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAK 79

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA+I G+  G YHPHG+A++YDAL R+AQD++LR  LI GQGNFGS+ G P AA RY
Sbjct: 80  PRKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARY 139

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  L+++L   TV+ RPNYDG+  EPVVL AR+PN+LVNG  GIAVGMATNI
Sbjct: 140 TEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNI 199

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNLGEV+  CV +I + D  +  LM+ I+GPDFP G  ++  +  +   Y  GRG + 
Sbjct: 200 PPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVK 259

Query: 250 IRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQ 306
           +RG    E  +  +  +++VV  +PY V   ++L +I  +V  +++  + D+ DE+ D+ 
Sbjct: 260 VRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKN 319

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-----PERFTLIGILKAF 361
           G ++V+E+K  A  + ++  LY++T+L+  FSVNM  L   +     P R  L  +L+ F
Sbjct: 320 GLKIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYF 379

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V +R +Y L     R H+L G AI   +LD+ +++IR S   + A ++LM   
Sbjct: 380 LDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLM--- 436

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L E+QT AILEL+L R++ L  + IR EL    
Sbjct: 437 -----------------------ANFPLDEIQTMAILELQLYRISKLEINTIREELAEKE 473

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMV 539
            E ++   IL+S  RL  +++ EL  + DE    R+T++   E + + + +  IVRE+  
Sbjct: 474 AEAEKIRKILASDKRLWKVVENELKELADEFPEKRQTKLGSSEEITEFDPQAYIVRENTN 533

Query: 540 VTVSHLGYVKRVP-LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V VS  G++KRV  L      +   K R+    R+ D V  +   ST   V+FFSS G  
Sbjct: 534 VVVSREGWIKRVGRLKTKEGTQELAKTRT----REGDSVLAVAPGSTLDHVVFFSSDGVA 589

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQG----ERITTIMPF-PEDESSWNN----LYVV 649
           Y   + ++P+ S    G+ L     ++ G      +TT   F PED+++        +V+
Sbjct: 590 YTLPIEQVPVSS--GYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTPHVL 647

Query: 650 FATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             T+ G   R   S F     ++G+   +L   D ++      +   + + T+  + +  
Sbjct: 648 IVTEKGQFMRISFSLFRTASTKAGRKYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHC 707

Query: 709 PI--SAIRVFAGRNSVGVRGISLAKGDQVISM 738
            I  +A+   AG+   GV+GI L KGDQVI +
Sbjct: 708 EIEEAALLSNAGK---GVKGIRLEKGDQVIGV 736


>gi|2181179|emb|CAB09528.1| gyrase alpha subunit [Acholeplasma laidlawii]
 gi|2204066|dbj|BAA20473.1| gyrase A subunit [Acholeplasma laidlawii]
          Length = 387

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/380 (52%), Positives = 277/380 (72%), Gaps = 2/380 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D+  +K I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM +  + 
Sbjct: 4   NTDKLHDK-IKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENNMY 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSVDGD  A
Sbjct: 63  ANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV+D   A +DNPDI +  LM+ ++GPDFPTG  ILG TG++ AY TG+G
Sbjct: 183 ATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            I +R    I +T  +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLRDES+R+
Sbjct: 243 IIAVRAQHEIVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDESNRK 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  ++A + 
Sbjct: 302 GMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTHYIAHQI 361

Query: 367 EVVVRRTKYLLNKARDRAHV 386
           E++ RRT++ L K +  A++
Sbjct: 362 EIITRRTQFDLEKLKLDAYI 381


>gi|23465992|ref|NP_696595.1| DNA topoisomerase IV subunit A [Bifidobacterium longum NCC2705]
 gi|23326709|gb|AAN25231.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 909

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 321/508 (63%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 426 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
 gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
          Length = 738

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/551 (40%), Positives = 337/551 (61%), Gaps = 41/551 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+    E  +         
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMEWFK--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 412 --------------------LTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRV 551
             S +G+V+ +
Sbjct: 512 ICSKMGWVRSL 522


>gi|13810767|gb|AAK40028.1|AF272018_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 305

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/305 (62%), Positives = 245/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NPDI L  LMEI
Sbjct: 121 SEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEI 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++TEIPYQVNKA 
Sbjct: 181 IPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|322689392|ref|YP_004209126.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460728|dbj|BAJ71348.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 909

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 321/508 (63%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 426 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|160905558|gb|ABX52337.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905574|gb|ABX52345.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905576|gb|ABX52346.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905580|gb|ABX52348.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905582|gb|ABX52349.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905630|gb|ABX52373.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905632|gb|ABX52374.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|293627261|gb|ADE58305.1| DNA gyrase alpha subunit [Bacillus subtilis subsp. inaquosorum]
          Length = 309

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|306822526|ref|ZP_07455904.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801406|ref|ZP_07695533.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554071|gb|EFM41980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221921|gb|EFO78206.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 897

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/508 (43%), Positives = 324/508 (63%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE R+
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  +  D+ +DTVDF PNYD   QEP VL +  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 ARAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR+GI+ AY +GRG++  R V+H
Sbjct: 200 GEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIVGRSGIREAYESGRGALTTRSVTH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTRLVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QL+R+T LQ  F++N VAL   +P    L  +LK +V  R  V+ RR++
Sbjct: 320 KTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPHTMGLKEMLKVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA +R H++ GL +A+ ++DEV+++IR S + E A+               LI + 
Sbjct: 380 FRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTR-------------LIAVF 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             L ++Q + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 427 D-------------LDDIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILASD 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L G++  E+        TPRRT +++
Sbjct: 474 EALDGVVIDEMDEAVAAYGTPRRTVLLD 501



 Score = 38.9 bits (89), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 111/277 (40%), Gaps = 34/277 (12%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPL-SVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           L ++DE C       V +S  G + R    +V R + R G   S V  +D+  V+ +F  
Sbjct: 560 LQIDDEPC------AVMLSATGLIARTHEDAVERWENRSG---SDVRTKDDQIVS-IFRT 609

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILSLNQ------GERITT 632
           +T +S    +S G +    V  LP  +P        G     +L + +      GER+  
Sbjct: 610 TTRSSYGLITSAGRLVLAHVVELPSVAPDGPLNVSGGVKAEELLGMTENTDPIRGERVIA 669

Query: 633 IMPFP------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            +  P      +D        +   T++G V+R        ++    I +K    DE+L+
Sbjct: 670 AIAMPSTDDAGKDGDGAEPAPLALGTRNGVVKRWNRESPTTMDSWSVIDLK--DGDEVLA 727

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                  + ++  +     + F    +R   GR + G+ GI LA G  V + A+V     
Sbjct: 728 AAEARDGDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAGIRLATGCSVAAFAVVPAEKV 786

Query: 747 --DYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSS 780
              YDE    +   S    L ++GD+E +   +N ++
Sbjct: 787 AWTYDEGENGLFSASGAVVLTVAGDSEALPGTENGAA 823


>gi|317482444|ref|ZP_07941461.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916104|gb|EFV37509.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
          Length = 909

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 321/508 (63%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 426 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|227547672|ref|ZP_03977721.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227211927|gb|EEI79823.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 945

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/509 (42%), Positives = 321/509 (63%), Gaps = 28/509 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 57  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 116

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 117 RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 175

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 176 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 235

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG++  R  +H
Sbjct: 236 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTLTTRAATH 295

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 296 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 355

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 356 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 415

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 416 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 461

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 462 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 509

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523
             L  ++  E+     +  +PRRT +++ 
Sbjct: 510 EALDQVVTDEMDEAVAKWGSPRRTVLLDA 538


>gi|171742649|ref|ZP_02918456.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283456272|ref|YP_003360836.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|171278263|gb|EDT45924.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283102906|gb|ADB10012.1| gyrA2 DNA gyrase subunit A [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/508 (43%), Positives = 324/508 (63%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE R+
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARM 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  +  D+ +DTVDF PNYD   QEP VL +  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 AQAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR+GI+ AY +GRG++  R V+H
Sbjct: 200 GEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIVGRSGIREAYESGRGALTTRSVTH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTRLVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QL+R+T LQ  F++N VAL   +P    L  +LK +V  R  V+ RR++
Sbjct: 320 KTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPHTMGLKEMLKVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA +R H++ GL +A+ ++DEV+++IR S + E A+               LI + 
Sbjct: 380 FRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTR-------------LIAVF 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             L ++Q + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 427 D-------------LDDIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERILASD 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L G++  E+        TPRRT +++
Sbjct: 474 EALDGVVIDEMDEAVAAYGTPRRTVLLD 501


>gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
 gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
          Length = 738

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/549 (40%), Positives = 338/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L+ D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---MMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRLLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E  L  +  D    I++E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFIIKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|160905614|gb|ABX52365.1| gyrase subunit alpha [Bacillus tequilensis]
          Length = 309

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV ++PDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESPDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 738

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/549 (40%), Positives = 336/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +I+ P  +++ +M  ++GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE++ IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAI---IMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E +   +  D    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVMFTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|332148448|dbj|BAK20073.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148450|dbj|BAK20074.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148462|dbj|BAK20080.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148468|dbj|BAK20083.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 308

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/308 (60%), Positives = 249/308 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSLFSVN 340
           LQ+ F +N
Sbjct: 301 LQTSFGIN 308


>gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
 gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
          Length = 804

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 266/717 (37%), Positives = 404/717 (56%), Gaps = 42/717 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S D  + K   + ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +
Sbjct: 36  MSDDAPDPKMNPTETLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKL 95

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD P
Sbjct: 96  ASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 155

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  LL+ L ++ VDFR NYDG+ +EPVVL A +PN+L NG  GIAVG
Sbjct: 156 AAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVG 215

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATG 244
           MATNIP HNL E++  C+ +I  PD   + LM  I GPDFPTG VI+  +  I  AY TG
Sbjct: 216 MATNIPPHNLEELIGACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAEAYRTG 275

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G   +R    +E     + Q++VTEIPYQV K+ ++EK+AE++  K++  +AD+RDES 
Sbjct: 276 KGGFRLRCKYEVEDLGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADVRDES- 334

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFV 362
            +  R+V+E K +    +V++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+
Sbjct: 335 AEDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFL 394

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V++RR+ + + K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W
Sbjct: 395 DHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKA---LMAEDW 451

Query: 423 NASDIK--DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             + ++  D  D +   +  +G +  M L++VQ  AIL +RL  L  L   ++  E ++L
Sbjct: 452 GKTHVRAMDEADYVSPLTALVG-EPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDAL 510

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDEDCI 533
            +E     D+L S       I ++L   +    +      RRT   E   + D+  E  I
Sbjct: 511 MLERAGLEDLLDSDDLQWKTIAEQLRETRKLFGSNSKGGARRTAFAEAGVIEDVPLEAMI 570

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            +E + V  S +G+++ +   +  A+         +  +D D    +F   T   +L F 
Sbjct: 571 DKEPVTVVCSKMGWIRAMTGHIDLARE--------LKFKDGDEGRFVFHAQTTDRLLVFG 622

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFAT 652
           S G  Y      LP G  +  G+ L  ++ L N+ E +   +       + N L +V + 
Sbjct: 623 SNGRFYTLGASTLPGG--RGMGEPLRLMVDLPNEAEIVALFI-----HRAGNRLMIVSSA 675

Query: 653 KHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSV-----ETCTQENDILLTTKL 702
             G +      D I   R+GK A+  K D R ++ S        C  EN  +L   L
Sbjct: 676 GDGFIVPE--DDVIAQTRAGKQALNVKGDVRAKVCSTVIGDHVACVGENRKVLLFPL 730


>gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 825

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 280/762 (36%), Positives = 415/762 (54%), Gaps = 53/762 (6%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     I ++ +    Q+ YL Y+++VI  RA+PD+RDGLKPV RRIL+ M Q  ++  
Sbjct: 24  DESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTMSQQRLDAT 83

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K+ KCA++ G+VMG YHPHG+++IY+AL RM+Q +SLR+ +I+G GNFGS+DGD  AA 
Sbjct: 84  AKHRKCAKVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAM 143

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTECR+   A  +L DL   TV F+PNYDG+ +EPVVL +R P++LVNG  GIAVGMAT
Sbjct: 144 RYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMAT 203

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALM--EIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           NIP HNL EV +  + ++ NP+I    L+  + I+GPDFPTG  I   +  ++  YATG 
Sbjct: 204 NIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGT 263

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I +RGV+ + + S   + + +TEIP+ VNKAAM+E+IAELV   ++  + ++RD S  
Sbjct: 264 GTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLST- 322

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGILK 359
           +  RV + LK+ A AD +L  LY++T LQ+ F+VN+  L   +      P+R  L  IL 
Sbjct: 323 EDIRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILW 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+ FR +V+  R    L     R H+L GLA+    LDE+++IIR S     A  ++M+
Sbjct: 383 YFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMK 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R      +K+L         T  S+G   L   QT AILEL+L RL  L  + + +EL  
Sbjct: 443 R----FPVKELTP-AQARRKTRASNG---LDAEQTDAILELKLYRLARLEINVVLDELKK 494

Query: 480 LGIEIKECLDILS------SRSRLLGIIKQELLS-VKDELDTP---RRTRIVEGLLDME- 528
               + E   +L+      + S    IIK+EL S + D  +TP   RR+ IV    ++E 
Sbjct: 495 KRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEVEY 554

Query: 529 -DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
            +ED IV ED  V V+  G+VKR       ++ R         +R  D V      +T T
Sbjct: 555 TEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKSR---------LRQGDAVLACVAGNTRT 605

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE------DES 641
           ++ FFSSLG  Y  ++  +P  +    G+ +  +     GERI   +           E 
Sbjct: 606 TLAFFSSLGVCYTARMIDIPAST--GFGEPIQKLFKFKDGERIIAALSMDPRILGDISED 663

Query: 642 SWNNLY----VVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDI 696
              N Y     + A+  G   R  L  F + + R+G+   ++     I+ V        +
Sbjct: 664 PKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETV 723

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           L  +   + +  P   I   +G    GV  + LA  D+++  
Sbjct: 724 LAVSADARAMVCPADEINYLSGAGK-GVLLLKLAASDKLLGF 764


>gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 825

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 279/762 (36%), Positives = 417/762 (54%), Gaps = 53/762 (6%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     I ++ +    Q+ YL Y+++VI  RA+PD+RDGLKPV RR+L+ M  + ++ +
Sbjct: 24  DESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSS 83

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K+ KCA++ G+VMGKYHPHG+++IY+AL RM+Q +SLR+ +I+G GNFGS+DGD  AA 
Sbjct: 84  AKHSKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAM 143

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTECR+   A  +L DL   TV F+PNYDG+ +EPVVL +R P++LVNG  GIAVGMAT
Sbjct: 144 RYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMAT 203

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALM--EIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           NIP HNL EV +  + ++ NP+I    L+  + I+GPDFPTG  I   +  ++  YATG 
Sbjct: 204 NIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGT 263

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I +RGV+ + + S   + + +TEIP+ VNKAAM+E+IAELV   ++  + ++RD S  
Sbjct: 264 GTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLST- 322

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGILK 359
           +  RV + LK+ A AD +L  LY++T LQ+ F+VN+  L   +      P+R  L  IL 
Sbjct: 323 EDIRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILW 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+ FR +V+  R    L     R H+L GLA+    LDE+++IIR S     A  ++M+
Sbjct: 383 YFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMK 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R      +K+L         T  S+G   L   QT AILEL+L RL  L  + + +EL  
Sbjct: 443 R----FPVKELTP-AQARRKTRASNG---LDAEQTDAILELKLYRLARLEINVVLDELKK 494

Query: 480 LGIEIKECLDILS------SRSRLLGIIKQELLS-VKDELDTP---RRTRIVEGLLDME- 528
               + E   +L+      + S    IIK+EL S + D  +TP   RR+ IV    ++E 
Sbjct: 495 KRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEVEY 554

Query: 529 -DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
            +ED IV ED  V V+  G+VKR       ++ R         +R  D V      +T T
Sbjct: 555 TEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKSR---------LRQGDAVLACVAGNTRT 605

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE------DES 641
           ++ FFSSLG  Y  ++  +P  +    G+ +  +     GERI   +           E 
Sbjct: 606 TLAFFSSLGVCYTARMIDIPAST--GFGEPIQKLFKFKDGERIIAALSMDPRILGDISED 663

Query: 642 SWNNLY----VVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDI 696
              N Y     + A+  G   R  L  F + + R+G+   ++     I+ V        +
Sbjct: 664 PKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETV 723

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           L  +   + +  P   I   +G    GV  + LA  D+++  
Sbjct: 724 LAVSADARAMVCPADEINYLSGAGK-GVLLLKLAASDKLLGF 764


>gi|213691857|ref|YP_002322443.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523318|gb|ACJ52065.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457952|dbj|BAJ68573.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 909

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 319/508 (62%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  +  Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDHPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGRG+   R  +H
Sbjct: 200 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGRGTFTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 426 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|302670819|ref|YP_003830779.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
 gi|302395292|gb|ADL34197.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
          Length = 745

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/725 (33%), Positives = 384/725 (52%), Gaps = 27/725 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D MQ S++ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 2   EDRIIKTEYSDIMQKSFIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGLRYDRPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYD L  M QD+   L L++G GNFG+++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYDCLVVMTQDFKKILPLVDGHGNFGNIEGDSHAAMRYTE 121

Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L+DL K+ VDF PN+D + +EP VL  + PN L+NG  GIAVGMAT+ P
Sbjct: 122 ARLSKITQENFLEDLDKNVVDFVPNFDETEREPSVLPVKIPNFLINGSEGIAVGMATSTP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  +A + +  +    LM+ I+GPDFPTG +++ +  +   Y TG G I IR
Sbjct: 182 PHNLAEVIDAEIAFMQDDTLTTKDLMKYIKGPDFPTGGIVINKDELLEIYETGVGKIRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQ---VNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G    EK       +V+TEIPY    +     +  +AEL  +K   DI D+ ++S ++G 
Sbjct: 242 GKVETEKGKNGHINLVITEIPYTMIGMGIGKFMSDVAELAEKKITNDIIDISNQSSKEGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+  + +   N LY+ T L+  F VNM+A++  +PE  +L  I++A   F+ E 
Sbjct: 302 RIVIELKKDTNVENFTNLLYKKTKLEDTFGVNMLAIDNGRPETMSLREIMRACADFQFET 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K +D+  +  GL  A   +D V+ I+R S +   A+  L+       + K
Sbjct: 362 ATRKYTTLLKKEQDKKEIQEGLIKACNVIDLVIEILRGSKDRAMAKNCLVNGETEGINFK 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   S  +      +  +E Q  AILE+RL +L GL  + +  E       I +  
Sbjct: 422 --------SRESKAMAAQLLFTEAQADAILEMRLYKLIGLELEALVKEHEQTVANIYKYE 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +   +  +I+ +L  +K E    R+T I      + +E  +   D+   +   GY 
Sbjct: 474 DILENHDSMAMVIQSDLNKIKKEFKADRKTVIDNRETAVYEEKPVEEMDVAFIMDRFGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   +   +                FI+     V FF++ G ++  K   LP 
Sbjct: 534 KTIDASTYEKNKETIQAEFKYS----------FIMKNTGKVCFFTNTGNLHTVKAMDLPQ 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ + +  +  T IM     +S  N   ++F TK   ++     +F  +
Sbjct: 584 GKMRDKGIPIDNVSNFDTAKE-TIIM--AASQSDLNLYRILFTTKMSMMKIVDGGEF-DV 639

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++    A KL   DE+++VE   ++  ++L +  G  +RF +  I     + +VGVRG+ 
Sbjct: 640 SKRTVAATKLADGDEVVNVEILHEQKTVILRSNDGFFLRFYVDTIPE-KKKAAVGVRGMR 698

Query: 729 LAKGD 733
           L K D
Sbjct: 699 LGKND 703


>gi|160905556|gb|ABX52336.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905654|gb|ABX52385.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 741

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/624 (39%), Positives = 359/624 (57%), Gaps = 64/624 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +S D      I   S+++ +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MTQPAVSGD------IRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD+++R  L+EGQGNFG++
Sbjct: 55  RQLKLDPEGGFKKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L   A  L+++L  DTVDFRP YDGS +EPVV+ A +PN+L NG  
Sbjct: 115 DGDNAAAMRYTEAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+GE+ +    +I  PD  +D L+  + GPDFPTG V++  +  I  
Sbjct: 175 GIAVGMATNIPPHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGS  +R    +EK S    QI+VTEIPYQV K+ ++EKIAEL+ EK++  +AD+
Sbjct: 235 AYRSGRGSFRLRAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADI 294

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           RDES  +  RVV+E + R   A++++ QL+R T L+   S+NM  L+    P    L  +
Sbjct: 295 RDES-AEDVRVVLEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQV 353

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV+ RR+++ L+K   R  VL G  +A  NLDEV+RIIR    P    + +
Sbjct: 354 LQAFLDHRMEVLERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEP----KAV 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R++                          L+EVQT AIL +RL  L  L   +IR E 
Sbjct: 410 MMRTFG-------------------------LTEVQTEAILNMRLRSLRKLEEFEIRKEH 444

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGLLDMEDEDC 532
           + L  E  +   +L+  SR    I  ++ + +      TP   RRT++ +          
Sbjct: 445 DQLSAEKSDLEALLADESRRWSTIAAQVAATRKAFGPGTPLGDRRTQLADA--------- 495

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQR---RGGKGR----SGVVMRDEDFVTDLFIVST 585
                  V V    +V+R P+++  +++   R  KG      GV  ++ D +       T
Sbjct: 496 ----PSAVVVPIEAFVEREPITLLLSEKGWIRAMKGHVDQLDGVKFKEGDQLKLALKAET 551

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIG 609
              +L F+S G  Y     +LP G
Sbjct: 552 TDKLLVFTSDGRFYTIGGDKLPSG 575


>gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
 gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
          Length = 775

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/601 (40%), Positives = 346/601 (57%), Gaps = 32/601 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + + YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +     + K A+ISG+VMG 
Sbjct: 25  LGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLNSTGGFRKSAKISGDVMGN 84

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+
Sbjct: 85  YHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEAMLE 144

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L ++ VDFR NYDG+  EP VL A++PN+L NG  GIAVGMATNIP HN+ E+VD C+ 
Sbjct: 145 GLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDACIH 204

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +I  PD   D L++ + GPDFPTG +I+     I NAY TG+G   +R     E      
Sbjct: 205 LIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLGRGA 264

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADV 322
            QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+RDES     R++IE + +    +V
Sbjct: 265 WQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDES-ADDIRLIIEPRSKNVDPEV 323

Query: 323 ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++  LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R EV+ RR+ Y + K  
Sbjct: 324 LMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTYRMEKID 383

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-T 440
            R  VL G  +A  NLD V+ IIR+  +P++A   LM   W     KD +  +D++SY  
Sbjct: 384 HRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSA---LMAEDWG----KDHVRAMDEASYVP 436

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LSEVQ  AIL +RL  L  L   ++  E  +L  E     D+L +       
Sbjct: 437 PAPSAENSLSEVQADAILNMRLRSLRRLEEIELLREQAALMEERSGLEDLLENEGTQWDT 496

Query: 501 IKQELLSVKDELDTP----------RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           I  +L   K +              RRT   E   + ++  E  I RE + V  S +G++
Sbjct: 497 IIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPLEAMIDREPITVVCSQMGWI 556

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + +   +   +         +  +D D    +F   T   +L F S G  Y      LP 
Sbjct: 557 RAMTGHIDLNRE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPG 608

Query: 609 G 609
           G
Sbjct: 609 G 609


>gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
 gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
          Length = 898

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/727 (34%), Positives = 410/727 (56%), Gaps = 49/727 (6%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K + K AR+ GEV+GKYH
Sbjct: 18  NRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPFKKSARVVGEVIGKYH 77

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RYTE RL K ++ LL+DL
Sbjct: 78  PHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKISNLLLEDL 137

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+P HNL E++D  + +I
Sbjct: 138 EKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEIIDATINII 197

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NP+I +D +++I++GPDFPTGAVI  + GI+ A+ TG+G ++I    H EK +     I
Sbjct: 198 KNPNITIDQILKIVKGPDFPTGAVIQNKQGIREAFLTGKGKVIISSKWHQEKNN-----I 252

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+VIEL   A+ + +   
Sbjct: 253 VIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEKANLETVRKF 312

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L++ T L   ++ N + +   +P++  LI I+KA+++  +EV ++RT++ LNKA  R  +
Sbjct: 313 LFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTQFNLNKANLRLEI 372

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL   ++ LDE++++IR S N   A   L+                           T
Sbjct: 373 VNGLIKTLSILDEIIKVIRKSENRLDAINNLV--------------------------IT 406

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              +  Q  AI+++RL RLT    + +  E   L  +IK+  +IL++   L   I   L 
Sbjct: 407 FKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIEKIKKYQEILNNSLVLDNEIISRLE 466

Query: 507 SVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
            VK +    R+++ VE L   LD++ ++ I+ +++ + +S  GY+K +  ++        
Sbjct: 467 EVKKQFGIKRKSQ-VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSS 525

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
            G+     +  D      + S    ++  S     Y   ++++     + +G  + ++ +
Sbjct: 526 FGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVAT 580

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSR 681
               E I   +   E  +S  +L +V  +K+G ++R ++SD      N+S KI MK+   
Sbjct: 581 TQPNETIINALVIKEFINSTQHLLLV--SKNGLIKRTQISDLETKIFNKSFKI-MKISDD 637

Query: 682 DEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           D ++  +  + +     + TK G  VR+ I  I +     S GV+  +L K D +IS A+
Sbjct: 638 DSLVYADLVSSKTSYCCIVTKNGYAVRYNIEDIPI-QSTISKGVKAANL-KDDYIIS-AL 694

Query: 741 VLHADAD 747
            L  + D
Sbjct: 695 SLQNNKD 701


>gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5]
 gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5]
          Length = 738

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/549 (40%), Positives = 338/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDG+  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAPKAI---MMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 769

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/661 (38%), Positives = 377/661 (57%), Gaps = 36/661 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  +  ++K A+ISG+ MG 
Sbjct: 23  LGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSASGGFLKSAKISGDTMGD 82

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+
Sbjct: 83  FHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTVVAEAMLE 142

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L ++ VD+R NYDG  +EPVVL A +PN+L NG  GIAVGMATNIP HN+ E+ D C+ 
Sbjct: 143 GLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGSTGIAVGMATNIPPHNVAELCDACLH 202

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +I +P+   + L++ + GPDFPTG VI+  +  I  AY TGRGS  +R     E      
Sbjct: 203 LIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILEAYRTGRGSFRLRCKWETEDLGRGM 262

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADV 322
            QIVVTEIPYQV K+ ++EK+AE++  K+I  + D+RDES     R+++E K +    DV
Sbjct: 263 WQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDVRDES-ADDVRIILEPKSKNVDPDV 321

Query: 323 ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++N LYR + L+  FS+NM V ++G  P+  +L  +L+AF+  R++V+ RR+++ ++K  
Sbjct: 322 LMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDVLRAFIDHRQDVLKRRSQHRIDKID 381

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-- 439
            R  VL G  IA  NLD V+ IIR+  +P+ A   LM+ +W     ++ +    +S Y  
Sbjct: 382 HRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMRENW----AQEFVRATSESDYRS 434

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              +D    LSEVQ  AIL +RL  L  L   ++  E ++L  E     D+LS       
Sbjct: 435 PAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRERDALMEERANLDDLLSDERLQWA 494

Query: 500 IIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            I ++L   +           RR++  E   + ++  E  I RE + V  S +G+V    
Sbjct: 495 KISEQLRETRKTFGKNYEGGARRSQFAEAGEVEEVPIEAMIEREPITVVCSKMGWV---- 550

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               RA +      S V  +D D    +F   T   +L F S G  Y      LP G  +
Sbjct: 551 ----RALKGHADLTSKVKFKDGDEARFMFHAETTDRLLIFGSNGRFYTLGANNLPGG--R 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L  ++ L     I  I+    D        ++ A+  G+      +D I   RSG
Sbjct: 605 GMGEPLRLMVDLPNEAEIVDILIHQPDRK------LLVASTAGDGFIVPENDVIAQTRSG 658

Query: 673 K 673
           K
Sbjct: 659 K 659


>gi|56159844|gb|AAV80733.1| gyrase subunit A [Bacillus sp. NRRL B-23936]
          Length = 319

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/318 (59%), Positives = 253/318 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 122 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 181

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 182 TNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 241

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 242 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 301

Query: 332 SLQSLFSVNMVALNGYKP 349
           +LQ+ F +N++AL   +P
Sbjct: 302 ALQTSFGINLLALVDGQP 319


>gi|315651451|ref|ZP_07904474.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
 gi|315486271|gb|EFU76630.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
          Length = 745

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/730 (33%), Positives = 408/730 (55%), Gaps = 36/730 (4%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  ++ + K ARI G+ 
Sbjct: 11  SEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELKIFSDRPHRKSARIVGDT 70

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAH 140
           MGKYHPHG+++IY+ L  ++QD+   + LI+G GNFGS++GD  AA RYTE +L + A  
Sbjct: 71  MGKYHPHGDSSIYETLVVLSQDFKKSMALIDGHGNFGSIEGDGAAAMRYTEAKLARFAEE 130

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             L DL K TV+F  NYD + +EP VL  R PN+L+NG  GIAVGM+T+IPTHNL EV D
Sbjct: 131 VYLKDLDK-TVEFVSNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPTHNLSEVCD 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--K 258
            C+A I N DID + L+EI+ GPDFPTG +I  +  + + Y+TG G + +RG   +E  +
Sbjct: 190 TCIAYIKNRDIDTEKLLEILHGPDFPTGGIIANKRDLLDIYSTGNGKLKLRGKIEVELGR 249

Query: 259 TSGDREQIVVTEIPYQ-----VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              D+++++++EIPY      +NK  +L  +A LV  K++ D+ D+ ++SD+ G R+V+E
Sbjct: 250 RKSDKDKLIISEIPYTMIGTGINK--LLVDVANLVETKKLSDVVDISNQSDKNGTRIVLE 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A  + I N LY+ T L+  F VNM+A+   +PE  +L  ILK ++ F+ ++  ++ 
Sbjct: 308 LKKDADIEKIKNILYKKTKLEDTFGVNMLAIVEGRPEILSLRDILKNYIEFQYKITTKKY 367

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
             LLNK  ++  +  GL  AV  +D ++ I+R S N   A++ L   S + + I   +  
Sbjct: 368 NILLNKELEKKEIQEGLIRAVDVIDLIIAILRGSKNLAQAKKCLT--SGDTTGITFKVKS 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           ++  +  +        ++ Q +A+L++RL +L GL  + +  +       I E  +IL +
Sbjct: 426 LEKDAKKLS------FTDKQAQAVLDMRLYKLIGLEIEALLKDNEITLKNIAEYKNILKN 479

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              +  +  ++L  +K E   PR+T I +    + +E+ +  E+++  +   GY K +  
Sbjct: 480 HKNMDKLFIKDLEKIKKEFAVPRKTYIEDAKEAVYEEEVLPSEEVIFVMDRFGYCKILDR 539

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +       +  +  V          F V     +  FS+ G +YK KV  L I   + 
Sbjct: 540 NTFDKNAENIETENKYV----------FPVMNTDRICIFSNKGILYKLKVTDLQISKLKD 589

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N+   +       ++   ED    +  Y++  TK G V++    +F + N    
Sbjct: 590 KGTPVDNLTKFDSSNE-NILLAVSEDNIQGS--YILMITKKGYVKKVSFEEF-KTNNKQV 645

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           ++ KL + D ++ V   +     DI + +     +RF IS +  F  +N+ G + ++L  
Sbjct: 646 VSTKLTNDDVLVGVNLLSAGINTDIFVVSDANYILRFDISEVNEFK-KNTRGEKAMTLGY 704

Query: 732 GDQVISMAIV 741
            + V +M ++
Sbjct: 705 NEFVENMYLL 714


>gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
 gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
          Length = 738

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/549 (40%), Positives = 335/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +I+ P  +++ +M  ++GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE++ IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAI---IMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E     +  D    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTFTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|47079978|gb|AAT10175.1| gyrase A [Bacillus mojavensis]
          Length = 309

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 248/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|291563504|emb|CBL42320.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SS3/4]
          Length = 748

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 258/730 (35%), Positives = 403/730 (55%), Gaps = 34/730 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K A
Sbjct: 5   ILRTEYSEEMQKSYLDYSMSVITSRAIPDARDGLKPVQRRVLYDMSELHLDHDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  ++QD+   + L++G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TVDF  NYD + +EP VL  R PN+LVNG  GIAVGM+T+IP HN
Sbjct: 125 KKFAEEVYLKDLDK-TVDFVSNYDETEKEPEVLPVRVPNLLVNGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D   A IDN  + ++ LM+ + GPDFPTG +I  +  +   Y TG G I +RG  
Sbjct: 184 LGEVIDAVKAYIDNRLLTVEELMQYMPGPDFPTGGIIANKGDLLQIYETGAGKIRLRGRI 243

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  +   DR+++V+TEIPY +  A +   L  +A+LV  +++ D+ D+ ++S ++G R
Sbjct: 244 EVELGRRKADRDKLVITEIPYTMIGAGINKFLMDVADLVETRKLTDVVDISNQSSKEGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+ A  + I   LY+ T L+  + VNM+A++  +PE   L  IL  F+ F+   +
Sbjct: 304 IVLELKKDADVNRIKAILYKKTKLEDTYGVNMLAIDEGRPETMNLKQILNTFLEFQYRNM 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            ++   LL K  ++  V  GL  A   +D ++ ++R S N + A+  LM  + N   IK 
Sbjct: 364 TKKYNVLLQKEMEKKEVQEGLIEACDVIDLIIAVLRGSKNMKDAKECLM--TGNTEKIKF 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +   +  +        ++ +E Q  AILE+RL +L GL    ++        +I+E   
Sbjct: 422 RVPGFEADA------KNLHFTERQATAILEMRLYKLIGLEILALQKAYKETLRKIREYKH 475

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILS++  +  +IK++L S+K E   PRRT I +G   +  E     ++++  +   GY K
Sbjct: 476 ILSNQKNMDVVIKEDLDSIKAEFAEPRRTLIEDGEEMVYVEAKEEAKEVIFVMDRFGYCK 535

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            +  S+Y   +      +  V+           V T   +  FS  G +Y+ KV   P  
Sbjct: 536 TMDRSIYERNQETVDSENVWVLP----------VMTDDKLCMFSDTGNMYQVKVAEFPTL 585

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  + N+   + G+  T +   P   S +     +FAT    V+     +FI  N
Sbjct: 586 KMKDKGIPIENVSKFD-GKTETILFMLP--ASGFTGKKFLFATAQAAVKIVPGEEFITAN 642

Query: 670 RSGKIAMKLDSRDEILSVETCTQE----NDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           ++  +A KL   D++  +     E     D++L T  G  ++F +  I     +NS GVR
Sbjct: 643 KT-VVATKLAGEDKLTEIREIGTEIDGTRDVVLQTVDGMFLKFQLEEIPELK-KNSRGVR 700

Query: 726 GISLAKGDQV 735
           GI L K D +
Sbjct: 701 GIRLEKEDTL 710


>gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
 gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
          Length = 767

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 258/686 (37%), Positives = 391/686 (56%), Gaps = 36/686 (5%)

Query: 6   ISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +S D E   G   V  S+   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++
Sbjct: 1   MSDDNETAPGPNDVTESLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRL 60

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD
Sbjct: 61  RLSPTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+  AA  LL+ L +D VDFR NYDG   EP VL A +PN+L NG  GIA
Sbjct: 121 NPAASRYTEARMTAAAEALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGSSGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYA 242
           VGMATNIP HNL E++D C+ +I +P    D+L+  I GPDFPTG VI+     +  AY 
Sbjct: 181 VGMATNIPPHNLHELIDACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMAEAYR 240

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+RDE
Sbjct: 241 TGRGSFRLRAKWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDE 300

Query: 303 SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKA 360
           S  +  RVV+E + R    ++++  L+R + L+  FS+NM V ++G  P+  +L  +L+A
Sbjct: 301 S-AEDVRVVLEPRARSVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLRA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R +V+VRR+++ L K   R  VL G  IA  +LD V+ IIR+  +P++A   LM  
Sbjct: 360 FLDHRRDVLVRRSRHRLGKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSA---LMAE 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W    I+   +   D      +D  + L+EVQ  AIL +RL  L  L   ++  E ++L
Sbjct: 417 DWAHPHIRATSE--KDYVGPKATDPEIALTEVQAEAILNMRLRSLRRLEELELIAERDAL 474

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTR--IVEGLLDMEDEDCI 533
             E +  + +L+  +     I  EL   + +    +P   RRT+  +   +  +  E  I
Sbjct: 475 RAERQGIMALLADEALQWARIADELRETRKQFGRTSPGGARRTQFALAADVAYVPIEAMI 534

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            RE + V  S +G+V+ +   +   +         +  +D D     F   T   +L F 
Sbjct: 535 DREPITVVCSQMGWVRAMTGHIDLTR--------DLKFKDGDAARFTFHAETTDKLLVFG 586

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFAT 652
           + G  Y      LP G  +  G+ L  ++ L N+ E I  ++  P ++       ++ A+
Sbjct: 587 ANGRFYTVSAANLPGG--RGMGEPLRLMIDLPNEAEIIDILIHKPGEK-------LLVAS 637

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL 678
             GN       + +   R+GK  + L
Sbjct: 638 TDGNGFVVPEVEVVAQTRAGKQVLNL 663


>gi|160905560|gb|ABX52338.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 YFGINMLAL 309


>gi|13810775|gb|AAK40032.1|AF272022_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/307 (60%), Positives = 248/307 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVNM 341
           + F +N+
Sbjct: 301 TSFGINL 307


>gi|319826934|gb|ADV74761.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/305 (60%), Positives = 247/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
 gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
          Length = 803

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 264/700 (37%), Positives = 398/700 (56%), Gaps = 42/700 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG 
Sbjct: 54  LGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKLASKGGFRKSAKISGDVMGN 113

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+  AA  LL+
Sbjct: 114 YHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAARYTEARMTAAAEALLE 173

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L ++ VDFR NYDG+ +EPVVL A +PN+L NG  GIAVGMATNIP HNL E++  C+ 
Sbjct: 174 GLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLEELIGACLH 233

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +I +P+   + L++ I GPDFPTG VI+  +  I  AY TG+G   +R    +E     +
Sbjct: 234 LIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIAEAYRTGKGGFRLRCKYEVEDLGRGQ 293

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADV 322
            Q+++TEIPYQV K+ ++EK+AE++  K++  +AD+RDES  +  R+V+E K +    +V
Sbjct: 294 WQVIITEIPYQVQKSRLIEKLAEIIELKKVPILADVRDES-AEDIRIVLEPKSKNVDVEV 352

Query: 323 ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+  R +V++RR+ + + K  
Sbjct: 353 LMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLIRRSTHRMVKID 412

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W  +  +  +D  D  S   
Sbjct: 413 HRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKA---LMAEDWGKTHAR-AMDEADYVSPLT 468

Query: 442 G--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
           G  S+  M L++VQ  AIL +RL  L  L   ++  E ++L +E     D+L S      
Sbjct: 469 GLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALMLERAGLEDLLDSEDLQWK 528

Query: 500 IIKQELLSVKDELDT-----PRRTRI-VEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552
            I  +L   +    +      RRT   V G++ D+  E  I +E + V  S +G+++ + 
Sbjct: 529 TIADQLRETRKLFGSNSEGGARRTAFAVAGVVEDVPLEAMIDKEPVTVVCSKMGWIRALT 588

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             +  A+         +  +D D    +F   T   +L F S G  Y      LP G  +
Sbjct: 589 GHIDLARE--------LKFKDGDEGRFVFHAQTTDRLLVFGSNGRFYTMGTSTLPGG--R 638

Query: 613 ARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
             G+ L  ++ L N+ E +   +       + N L V  +   G V      D I   R+
Sbjct: 639 GMGEPLRLMVDLPNEAEIVALFI-----HRAGNKLLVASSAGDGFVVPE--DDVIAQTRA 691

Query: 672 GK--IAMKLDSRDEILSVET-----CTQENDILLTTKLGQ 704
           GK  + +K D R  + S  T     C  EN  +L   L +
Sbjct: 692 GKQVLNVKGDVRARVCSTVTGDYVACVGENRKVLLFPLDE 731


>gi|332148454|dbj|BAK20076.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148464|dbj|BAK20081.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148466|dbj|BAK20082.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 307

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/307 (60%), Positives = 248/307 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSLFSVN 340
           Q+ F +N
Sbjct: 301 QTSFGIN 307


>gi|225028803|ref|ZP_03717995.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
 gi|224953887|gb|EEG35096.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
          Length = 754

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 247/736 (33%), Positives = 404/736 (54%), Gaps = 44/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D MQ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++G+  +K + K A
Sbjct: 5   IIKTEFSDVMQKSYIDYAMSVICQRALPDVRDGLKPVQRRVLYAMQELGLSADKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+AL  M QD+   + L++G GNFGS++GD  AA RYTE +L
Sbjct: 65  RIVGDTMGKYHPHGDSSIYEALVVMEQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEAKL 124

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           QK      L D+ K+ VDF+PN+D + +EPVVL  R PN+L+NG  GIAVGM T+IP HN
Sbjct: 125 QKFTQDVYLADMDKNVVDFQPNFDETEKEPVVLPVRIPNLLINGAEGIAVGMTTSIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDG  A +DNP+I  + LME ++GPDFPTG +++ +  +KN Y TG G + +RG  
Sbjct: 185 LSEVVDGVKAYMDNPEITTEELMEYVKGPDFPTGGIVVNQKELKNIYETGSGKMKLRGKV 244

Query: 255 HIEKTS--GDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           H EK     +R+++V+TEIPY +   N +  +  +  L+  K   DI D+ +ES ++G R
Sbjct: 245 HFEKAKKRSERDKLVITEIPYTMIGANISKFISDVVSLIENKTTSDIIDVSNESSKEGIR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL+R A A+ + N LY+ T L+  F VNM+A+   KPE  +L  I+     F  EV+
Sbjct: 305 IVLELRRNADAERLENLLYKKTRLEDTFGVNMLAIANGKPELLSLKDIISHHTKFHYEVL 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ + LL K  ++  +  GL  A   +D ++ I+R S + + A+  L+          D
Sbjct: 365 TRKYETLLKKELEQKEIKEGLIKACDIIDLIIEILRGSKSLKDAKSCLIN--------GD 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
             ++   +  +      +  +E Q  AILE+RL RL GL    ++ E   +  +I +  D
Sbjct: 417 TENITFKTQKSKKEASKLCFTEKQASAILEMRLYRLIGLEIMALQEEYAEILKKIDKYQD 476

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL   + +  ++K++L  +K      R+T +      +     I  +++V  +   GY K
Sbjct: 477 ILEHPASMKRVMKKDLEKIKKNYGFDRKTELTNAKAAVVKALPIEEKEVVFVMDRFGYSK 536

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT----SVLFFSSLGFVYKEKVWR 605
            +  + Y               R+E+ V   +    H      +  F+  G +++ KV  
Sbjct: 537 ILDKNTYE--------------RNEETVLKEYRHIVHCMNTDKICVFTDTGVMHQIKVQD 582

Query: 606 LPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P G  + +G  L NI + + + E+I  I+P    + +     ++F T    ++    ++
Sbjct: 583 IPSGRLRDKGTPLDNIGNYDSRNEQILLIVP----DRTLKEASLLFVTASSMIKLVDGAE 638

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-----DILLTTKLGQCVRFPISAIRVFAGR 719
           FI + +    + KL   D + +V     +       I++ ++ G  +RFP+  +     +
Sbjct: 639 FI-VQKKTVASTKLAEGDILAAVRLVAAKEGSINAQIIMQSEEGYFLRFPLEEV-TRKKK 696

Query: 720 NSVGVRGISLAKGDQV 735
            ++G+RG+ L + D +
Sbjct: 697 GAIGIRGMKLQEDDHI 712


>gi|327335378|gb|AEA49884.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/307 (60%), Positives = 248/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +N++AL
Sbjct: 301 GINLLAL 307


>gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15]
 gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000]
 gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15]
 gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000]
          Length = 759

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/644 (38%), Positives = 363/644 (56%), Gaps = 67/644 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +T+ +   YL YA++ I  RA+PD+RDGLKPVHRR+L+ M  M +  +    KCA
Sbjct: 18  ILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ GEVMG +HPHG+A+IYDAL R+AQ++S R+ L+EGQGNFG++DGD  AA RYTEC++
Sbjct: 78  KVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  LLD + +D VDFRP YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 138 TEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNA 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E++D C  ++ NPD     L+E + GPDFPTG VI+  R  +   Y TGRG + +R   
Sbjct: 198 AELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKW 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES  +  R+V+E 
Sbjct: 258 EKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDES-AEDIRLVLEP 316

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
           K +    +V++  L++ ++L+S F VN+  L+    P    +   L AF+A R EV+ RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K   R H+L GL IA  NLDEV+RI+R+   P+                + LI+
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPK----------------EKLIE 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L+++Q  AIL  RL +L  L   +IR E   L  E    L +L+
Sbjct: 421 -------------TFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILAMLA 467

Query: 493 SRS---RLLGI----IKQELLSVKDELDTPRRT----RIVEGLLDMEDEDC-----IVRE 536
           S +   +L+G+    ++  LL +K  LD PR T    R V G     D D      IVRE
Sbjct: 468 SEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDADAAIEAMIVRE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFF 592
            + + +S  G++            R  KG+    S +  ++ D +  L    T   +L F
Sbjct: 528 PITIILSERGWI------------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKLLIF 575

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           SS G  +     +LP  S +  G+ +  ++ L+   +I  + PF
Sbjct: 576 SSDGRFFTLGCDKLP--SARGHGEPVRMMIELDDKVKIIDVFPF 617


>gi|62946516|gb|AAY22401.1| GyrA [Bacillus subtilis]
          Length = 311

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/307 (60%), Positives = 248/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +N++AL
Sbjct: 301 GINLLAL 307


>gi|319826932|gb|ADV74760.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/305 (60%), Positives = 247/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|160905610|gb|ABX52363.1| gyrase subunit alpha [Bacillus mojavensis]
 gi|160905652|gb|ABX52384.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
 gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
          Length = 771

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 252/591 (42%), Positives = 360/591 (60%), Gaps = 25/591 (4%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 30  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGDVMGNYHPH 89

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+  AA  LL+ L +
Sbjct: 90  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAAAEALLEGLNE 149

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VD+R NYDG+  EPVVL A +PN+L NG  GIAVGMATNIP HN+ E+VD C+ +I  
Sbjct: 150 NAVDYRENYDGTLTEPVVLPATFPNLLANGSSGIAVGMATNIPPHNIPELVDACLHLIKA 209

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           P+   + L+E++ GPDFPTG VI+  +  I NAYATGRGS  +R    IEK    + QIV
Sbjct: 210 PNARDETLIEMVPGPDFPTGGVIVEPKENILNAYATGRGSFRLRCKWEIEKLDRGQWQIV 269

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAE+++ K+I  +AD+RDES     R+VIE K +    +V++N 
Sbjct: 270 VTEIPYQVQKSKLIEKIAEVIQLKKIPILADVRDES-ADDVRMVIEPKSKNVDPEVLMNM 328

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR + L+  FS+NM V ++G  P+  +L  +L+AF+  R EV++RR+++ + K   R  
Sbjct: 329 LYRNSDLEVRFSMNMNVLIDGLTPKVCSLKEVLRAFLDHRREVLIRRSQHRMAKIDHRLE 388

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           VL G  +A  NLD V+ IIR+  +P+ A   L++  W+ +  K  +D  D  S  +  + 
Sbjct: 389 VLEGFIVAFLNLDRVIDIIRYDDDPKAA---LIREDWSLTH-KRAMDETDYLSPALRDEE 444

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSEVQ  AIL +RL  L  L   ++  E ++L  E  E  D+L S       I ++L
Sbjct: 445 G--LSEVQAEAILNMRLRSLRRLEELELLREQSALMEERAELEDLLDSDDLQWSRISEQL 502

Query: 506 LSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
              + +         RRT   E   + D+  E  I RE + +  S +G+V+ +   V  A
Sbjct: 503 RETRKQFGKNYKGGARRTLFAEAAEVEDVPIEAMIEREPITIVCSKMGWVRALSGHVDLA 562

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +         +  +D D    +F   T   +L F + G  Y      LP G
Sbjct: 563 RE--------LKFKDGDEARFMFHAETTDRLLVFGTNGRFYTVSASNLPGG 605


>gi|183601381|ref|ZP_02962751.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191120|ref|YP_002968514.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196526|ref|YP_002970081.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218987|gb|EDT89628.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249512|gb|ACS46452.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251080|gb|ACS48019.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794109|gb|ADG33644.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 891

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 282/846 (33%), Positives = 425/846 (50%), Gaps = 123/846 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +   + Y+
Sbjct: 17  EEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYM 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 77  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMATN+ T
Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG +  R 
Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRS 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
            +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +DR  G R+V
Sbjct: 256 ATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R           
Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I E   IL
Sbjct: 425 ---------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERIL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT------------------------------RIV 521
            S + L G++  E+        TPRRT                              R  
Sbjct: 470 GSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHA 529

Query: 522 EGLLD-------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E +LD                   +EDE C      V+ +S  G + R+ +       + 
Sbjct: 530 ENVLDAADAVAAARKAGETAEALRIEDEPC------VIALSASGLIARMSIDALTIWAK- 582

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            +G        +D +  L    T       +S G +    V  LP          +   L
Sbjct: 583 -RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELP-------NLEVTGHL 634

Query: 623 SLNQGERITTIM-------PFP---------------EDESSWNNLYVVFATKHGNVRRN 660
           SL  G   T ++       P P               +D+++     V   T++G V+R 
Sbjct: 635 SLTGGIEATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRW 694

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                  ++    I +K    DE+L       ++  +  +     + +    +R   GR 
Sbjct: 695 NRESPTTMDSWSIIDLK--DGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRT 751

Query: 721 SVGVRGISLAKGDQVISMAIVLHA-----DADYDERICYMKHMSAQRRL-ISGDTEEITS 774
           + G+ GI LA G  V+S A+V HA     DA++D+    +   S    L ++GD + +  
Sbjct: 752 AAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDALPG 811

Query: 775 LKNDSS 780
            +N ++
Sbjct: 812 TENGAA 817


>gi|332148446|dbj|BAK20072.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148452|dbj|BAK20075.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148456|dbj|BAK20077.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148458|dbj|BAK20078.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148460|dbj|BAK20079.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148470|dbj|BAK20084.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148472|dbj|BAK20085.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148474|dbj|BAK20086.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148476|dbj|BAK20087.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148478|dbj|BAK20088.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 306

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVN 340
           + F +N
Sbjct: 301 TSFGIN 306


>gi|56159870|gb|AAV80746.1| gyrase subunit A [Bacillus sp. NRRL B-23956]
          Length = 312

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|219683436|ref|YP_002469819.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621086|gb|ACL29243.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
          Length = 982

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 275/810 (33%), Positives = 410/810 (50%), Gaps = 117/810 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +   + Y+
Sbjct: 17  EEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYM 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 77  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMATN+ T
Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG +  R 
Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRS 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
            +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +DR  G R+V
Sbjct: 256 ATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R           
Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I E   IL
Sbjct: 425 ---------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERIL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT------------------------------RIV 521
            S + L G++  E+        TPRRT                              R  
Sbjct: 470 GSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHA 529

Query: 522 EGLLD-------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E +LD                   +EDE C      V+ +S  G + R+ +       + 
Sbjct: 530 ENVLDAADAVAAARKAGETAEALRIEDEPC------VIALSASGLIARMSIDALTIWAK- 582

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            +G        +D +  L    T       +S G +    V  LP          +   L
Sbjct: 583 -RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELP-------NLEVTGHL 634

Query: 623 SLNQGERITTIM-------PFP---------------EDESSWNNLYVVFATKHGNVRRN 660
           SL  G   T ++       P P               +D+++     V   T++G V+R 
Sbjct: 635 SLTGGIEATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRW 694

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                  ++    I +K    DE+L       ++  +  +     + +    +R   GR 
Sbjct: 695 NRESPTTMDSWSIIDLK--DGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRT 751

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDE 750
           + G+ GI LA G  V+S A+V HAD ++ +
Sbjct: 752 AAGMAGIHLADGCTVLSCAVVAHADVEWHD 781


>gi|289178865|gb|ADC86111.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 890

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 275/810 (33%), Positives = 410/810 (50%), Gaps = 117/810 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +   + Y+
Sbjct: 17  EEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYM 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 77  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMATN+ T
Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG +  R 
Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRS 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVV 311
            +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +DR  G R+V
Sbjct: 256 ATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R           
Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I E   IL
Sbjct: 425 ---------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERIL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT------------------------------RIV 521
            S + L G++  E+        TPRRT                              R  
Sbjct: 470 GSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHA 529

Query: 522 EGLLD-------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E +LD                   +EDE C      V+ +S  G + R+ +       + 
Sbjct: 530 ENVLDAADAVAAARKAGETAEALRIEDEPC------VIALSASGLIARMSIDALTIWAK- 582

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            +G        +D +  L    T       +S G +    V  LP          +   L
Sbjct: 583 -RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELP-------NLEVTGHL 634

Query: 623 SLNQGERITTIM-------PFP---------------EDESSWNNLYVVFATKHGNVRRN 660
           SL  G   T ++       P P               +D+++     V   T++G V+R 
Sbjct: 635 SLTGGIEATELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRW 694

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                  ++    I +K    DE+L       ++  +  +     + +    +R   GR 
Sbjct: 695 NRESPTTMDSWSIIDLK--DGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRT 751

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDE 750
           + G+ GI LA G  V+S A+V HAD ++ +
Sbjct: 752 AAGMAGIHLADGCTVLSCAVVAHADVEWHD 781


>gi|291516760|emb|CBK70376.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum F8]
          Length = 908

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/508 (42%), Positives = 320/508 (62%), Gaps = 28/508 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ THNL
Sbjct: 140 GPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYA GRG++  R  +H
Sbjct: 200 GEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYANGRGTLTTRAATH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ IV+TE+PY V    ++E+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IEHVTARKQAIVITELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ RR++
Sbjct: 320 KTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDHRRVVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM              ++
Sbjct: 380 YRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM--------------VV 425

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D            L EVQ + IL+LRL RLT + R ++  E + L   I+E   IL+S 
Sbjct: 426 FD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE 522
             L  ++  E+     +  +PRRT +++
Sbjct: 474 EALDQVVTDEMDEAVAKWGSPRRTVLLD 501


>gi|56159850|gb|AAV80736.1| gyrase subunit A [Bacillus sp. NRRL B-23959]
          Length = 324

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/321 (58%), Positives = 254/321 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTL 354
           Q+ F +N++AL   +P+  +L
Sbjct: 301 QTSFGINLLALVDGQPKVLSL 321


>gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
 gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
          Length = 738

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/551 (40%), Positives = 336/551 (60%), Gaps = 41/551 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNI 
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIL 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ +M  ++GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIE-LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---MMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E     +  D    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTFTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRV 551
             S +G+V+ +
Sbjct: 512 ICSKMGWVRSL 522


>gi|56159848|gb|AAV80735.1| gyrase subunit A [Bacillus sp. NRRL B-23958]
          Length = 325

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/321 (58%), Positives = 254/321 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTL 354
           Q+ F +N++AL   +P+  +L
Sbjct: 301 QTSFGINLLALVDGQPKVLSL 321


>gi|284803673|emb|CBJ21242.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 316

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/312 (60%), Positives = 250/312 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I 
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 300

Query: 333 LQSLFSVNMVAL 344
           LQ+ F +N++AL
Sbjct: 301 LQTSFGINLLAL 312


>gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
 gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
          Length = 737

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/549 (40%), Positives = 336/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EP+++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +ID+P+ +++ +M  I+GPDFPTG +I+ +  + N AY TGRGS  +
Sbjct: 182 PHNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E  S    QIVVTEIPYQV K+ ++E++A L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + R     +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YL+NK + R  +L GL IA  NLDE+++IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEPKAI---MMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEHEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  I+K+E+ +V+ +  L+T    RRT   E  L  +  D    + +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKAVQMQFGLNTVIGDRRTSFEEVTLTNQVVDITAFVTKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
 gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
          Length = 747

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/667 (37%), Positives = 378/667 (56%), Gaps = 56/667 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           TS  ++  +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +     + K A+
Sbjct: 21  TSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLSPTGAFRKSAK 80

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           ISG+VMG YHPHG+AAIYDA+AR+AQ +++R  L++GQGNFG++DGD PAA RYTE RL 
Sbjct: 81  ISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGNFGNIDGDNPAASRYTEARLT 140

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            AA  L++ L ++ VDFRPNYDG+ +EP+VL A +PN+L NG  GIAVGMATN+P HNL 
Sbjct: 141 AAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLCNGASGIAVGMATNVPPHNLH 200

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           EV+D C+ +I  PD   D L+ I+ GPDFPTG V++  R  I  AY TGRGS+ +R    
Sbjct: 201 EVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRETIAEAYRTGRGSLRLRARWS 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     + QIVVTEIPYQV K+ ++E++AE+++ K++  +AD+RDES  +  R+V+E +
Sbjct: 261 VEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPILADVRDES-AEDIRIVLEPR 319

Query: 316 -RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            R   A+ ++  L+R + L+  F +NM V ++G  P+  +L  +L+AF+  R EV+VRR+
Sbjct: 320 TRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCSLKEVLRAFLDHRREVLVRRS 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+K   R  VL G  IA  NLD V+ IIR   +P+                     +
Sbjct: 380 NHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKAV-------------------M 420

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I +            LS+VQ  AIL +RL  L  L   ++R E  +L  E +    +L+ 
Sbjct: 421 IAE----------FKLSDVQVEAILNMRLRALRRLEEIELRAEHENLTREREGLAAMLAD 470

Query: 494 RSRLLGIIKQELLSVKDELDTP-----RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLG 546
                  I +EL   + +         RRT I E   + +++ +  I RE + V +S +G
Sbjct: 471 EGAQWARIAEELRETRAKFGKSASGGQRRTEIGEAGEVAEIDMDAMIEREPITVILSKMG 530

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      + V  +D D         T   ++ F++ G  Y      L
Sbjct: 531 WI--------RAMKGHQPLDAEVKFKDGDGPFMALHAETTDKLMVFAANGRFYTLPANNL 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L     +  + P+ + E      Y+V A+K G+      +D +
Sbjct: 583 PGG--RGMGEPLRLMIDLPNDAAVIDMFPWRDGER-----YLV-ASKAGDGFVVAGADIL 634

Query: 667 QINRSGK 673
              R+GK
Sbjct: 635 AQTRAGK 641


>gi|227873175|ref|ZP_03991466.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841006|gb|EEJ51345.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 459

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/452 (45%), Positives = 295/452 (65%), Gaps = 31/452 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   M+N+Y+ YA++VI+ RAIPD+RDGLKPV RR+L+ +  +GV  +KK  KCA
Sbjct: 9   VQDVDLKKTMENAYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYALQSLGVTPDKKTKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GE MGKYHPHG+++IY +L  M Q WS+R +LI+ QGNFGS DGD PAA RYTE ++
Sbjct: 69  TIVGETMGKYHPHGDSSIYGSLVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEAKM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L  + K+TVDF PN+   ++EPVVL +R+PN+LVNG  GIAVGM+TNIP HNL
Sbjct: 129 SRLAGEMLAGINKNTVDFMPNFSNEYEEPVVLPSRFPNLLVNGATGIAVGMSTNIPPHNL 188

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV+ G   +IDN       +++ L+ II+GPDFPTGA ILG+ GI+ AY TGRG I +R
Sbjct: 189 REVIKGVDCIIDNKIAGRKTEIEELLPIIQGPDFPTGATILGKRGIEEAYRTGRGKIKMR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            +  IE     + +I+V E+PY V ++ ++EKIAELV++KRI  I  + D + +    ++
Sbjct: 249 AICEIEPMHNGKNRILVKELPYLVYRSRVIEKIAELVKDKRIDGITYIHDAAGKNSKAKI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE ++  +  VILNQLY++T LQ  F V M+ +   +P+   L+ IL+ F+A + +VV 
Sbjct: 309 AIECRKDVNPHVILNQLYKHTQLQETFGVIMLCIVRGEPKILNLLEILEEFLAHQIQVVT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L K  DRAH+L GL  A+ ++DE+V IIR + N E A++ L+ R          
Sbjct: 369 RRTQYDLQKCEDRAHILEGLLKALDHIDEIVAIIRAAKNVEEAKQNLITR---------- 418

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
                              +EVQ +AI+++RL
Sbjct: 419 ----------------FAFTEVQAQAIVDMRL 434


>gi|28916618|gb|AAO59542.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/305 (60%), Positives = 246/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 182 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 241

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+  +LQ+ F +
Sbjct: 242 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQAALQTSFGI 301

Query: 340 NMVAL 344
           N++AL
Sbjct: 302 NLLAL 306


>gi|238917146|ref|YP_002930663.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238872506|gb|ACR72216.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 769

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 254/773 (32%), Positives = 416/773 (53%), Gaps = 61/773 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SY+ Y+++VI  RA+PD+RDGLKPV RR+L+ M ++G+ ++K + K ARI G+ MGK
Sbjct: 14  MQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPHRKSARIVGDTMGK 73

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLL 143
           YHPHG+++IY+ L  ++QD+   + L++G GNFGS++GD  AA RYTE +L+K      L
Sbjct: 74  YHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEAKLKKFTQDVYL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGM TNIP HNL EVVD   
Sbjct: 134 ADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNIPPHNLSEVVDAVC 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--KTSG 261
           A +DN DI  D LM++  GPDFPTG +++ ++ +   Y TG G I +RG    E  K   
Sbjct: 194 AYMDNEDITTDELMQLCPGPDFPTGGIVINKSELGAIYETGTGKIKLRGKVIFEPAKNRS 253

Query: 262 DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +++++V+TEIPY +   N    +  +  L+  K+  DI D+ +ES ++G R+V+ELK+ A
Sbjct: 254 EKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSKEGIRIVLELKKNA 313

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               + N LY+ T L+  F VNM+A+   +PE   +  I+K  + F+ E+  R+   LL 
Sbjct: 314 DVKNLENLLYKKTKLEDTFGVNMLAIVDGRPETLGIKDIIKHHINFQYELATRKYTTLLE 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K +    +  GL  A   +D ++ I+R S N + A+  L+  +      K        S 
Sbjct: 374 KEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVEGIKFK--------SE 425

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            +      +  +E Q  AILE+RL +L GL   +++ E +    +I++   IL SR  + 
Sbjct: 426 QSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYEKILGSRKEMA 485

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +IK +LL++K E    RRT I +G   + +E  I   +++  +   GY + + ++ +  
Sbjct: 486 KVIKADLLNIKKEYGVERRTVIEDGEAAVFEEKKIPEMEVMFIMDRFGYARTIDMAAFER 545

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGK 616
                        +D  F  + +++    +  +  F+  G +++ K+  LP    + +G 
Sbjct: 546 N------------KDAVFNENKYVIPVMNTDKICIFTDTGDLHQLKIKDLPFTKFRDKGT 593

Query: 617 ALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            + N+ + +   E I  I PF        N  ++F T+ G ++     +F Q+ +     
Sbjct: 594 PIDNLCNYDSSKEIIVYITPF----ERLKNQKMLFVTRQGMMKLVDSEEF-QVAKRTVAC 648

Query: 676 MKL------------DSRDEILSV----------ETCTQENDILLTTKLGQCVRFPISAI 713
            KL            D+R EI S           E      ++++ T+ G  ++FP++ I
Sbjct: 649 TKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKFPLTDI 708

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHAD---ADYDER-ICYMKHMSAQR 762
            +   +++VGVRGI L+K D +  + ++   D    +Y  + I + K  +A R
Sbjct: 709 PM-KKKSAVGVRGIKLSKDDYIEDVFLLTEGDEFTMEYKGKSISFAKMKTAHR 760


>gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
 gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
          Length = 814

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/638 (39%), Positives = 361/638 (56%), Gaps = 73/638 (11%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  LLD L +
Sbjct: 87  GDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEALLDGLNE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VD+R NYDG+ +EP+VL A +PN+L NG  GIAVGMATNIP HN+ E+VD C+ +I  
Sbjct: 147 NAVDYRDNYDGTLREPIVLPASFPNLLANGSSGIAVGMATNIPPHNISELVDACLHLIKV 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   D L+  I GPDFPTG VI+  R  I  AY TGRG+  +R    +E     + QIV
Sbjct: 207 PDARDDTLLNYIPGPDFPTGGVIVEPRENIAQAYRTGRGAFRLRCKWEVEDLGRGQWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EK+AE+++ K++  +AD+RDES     R+V+E + +    +V++  
Sbjct: 267 VTEIPYQVQKSKLVEKLAEVIQTKKVPILADIRDES-ADDVRMVLEPRSKNVDPEVLMGM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR + L+  FS+NM V ++G  P+  +L  +L+AF+ FR EV+ RR+++ + K  +R  
Sbjct: 326 LYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRREVLERRSRHRMAKIDNRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-------------------- 425
           VL GL  A  NLD V+ IIR+  +P+ A   LM   W+                      
Sbjct: 386 VLQGLITAFLNLDRVIEIIRYDDDPKVA---LMYEDWSTPHQASLSRAMTEADYRSPLEG 442

Query: 426 -DIKDLIDLIDDSSYTIG--SDGTMY---------------LSEVQTRAILELRLARLTG 467
            DI  L+ + D  +  +G  ++ T                 LS+VQ  AIL +RL  L  
Sbjct: 443 VDIAQLVLIADPEAEAMGVLAESTAATPREVPHSYAGRENGLSDVQAEAILNMRLRSLRR 502

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE------LDTP----RR 517
           L  D +  E ++L  E     D+L   +     I ++L  VK        LD      RR
Sbjct: 503 LEEDALVRERDTLMEERAGLEDLLEDETLQWDAISEQLRQVKKTFGRDYVLDGKNVGVRR 562

Query: 518 TRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK----RVPLSVYRAQRRGGKGRSGVVM 571
           T+  E   + ++  E  I RE + V  S +G+++     + LS     + G +GR     
Sbjct: 563 TQFAEAGEVEEVPLEAMIDREPITVVCSKMGWIRAMSGHIDLSRELKFKDGDEGR----- 617

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
               FV   F   T   +L F + G  Y      LP G
Sbjct: 618 ----FV---FHAETTDRLLVFGTNGRFYTLSAANLPGG 648


>gi|13810777|gb|AAK40033.1|AF272023_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|13810779|gb|AAK40034.1|AF272024_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 309

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 248/309 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 300

Query: 341 MVALNGYKP 349
           ++AL   +P
Sbjct: 301 LLALVDGQP 309


>gi|116618458|ref|YP_818829.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097305|gb|ABJ62456.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 812

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/739 (34%), Positives = 397/739 (53%), Gaps = 47/739 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K A
Sbjct: 5   ITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE RL
Sbjct: 65  KSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP HNL
Sbjct: 125 SKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+    + ++D+P   L  LM  ++GPDFPTG ++ G  GIK AY TGRG IV+R  + 
Sbjct: 185 KEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGIVQGLDGIKKAYKTGRGKIVVRAKTE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I      +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIEL 
Sbjct: 245 ISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVIELS 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF++FR+EVV++R+ Y
Sbjct: 305 KEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLKRSAY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ R               
Sbjct: 365 ELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINR--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSSR 494
                         ++ Q  AI+ L+L RLT      +  E + L  +I  CL+ I+   
Sbjct: 410 -----------FEFTQAQAEAIVTLQLYRLTNTDVTQLEEEFSQLNDKIN-CLNQIIHEE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S L  +I++E+ ++     +PRR+ I   VE L+ ++    I  ED+ V VS  GY KR 
Sbjct: 458 SALKDVIREEIKAITKAYSSPRRSVIEAEVENLV-IDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++A        +G  + ++D V     ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSFKA----SDNENG--LAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+     LS N  +    I     D       + +  +  G +++  L D +     
Sbjct: 571 KDTGEHFSQQLS-NWDKDEVVIKAIAVDNLEQGGAFTI-VSNDGFIKQTTLVDIVPKAYK 628

Query: 672 GKIAMKLDSRDEILSVETCT-----QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            K +M +  + ++  V         +  ++LL +  G  +R+ I  +     R S GV+ 
Sbjct: 629 KKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHNGVGLRYAIKEVPEIGSRTS-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L + D  I  A+ +  D
Sbjct: 688 MDL-RDDDTIKAALFITDD 705



 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +K Q +L +S  G G R +  +   I +R+  G++A D+   + I A  A+F  +D   +
Sbjct: 653 VKRQNVLLLSHNGVGLRYAIKEVPEIGSRTS-GVKAMDLRDDDTIKA--ALFITDDKQSV 709

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +V++ G    +PV+ I  + R  KGV+IF+  K
Sbjct: 710 AIVAENGAFKYMPVSLINHSKRGNKGVLIFTQKK 743


>gi|327335382|gb|AEA49886.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 304

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 185/304 (60%), Positives = 246/304 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 300

Query: 341 MVAL 344
           ++AL
Sbjct: 301 LLAL 304


>gi|160905612|gb|ABX52364.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 307

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/307 (60%), Positives = 246/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 ELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +NM+AL
Sbjct: 301 GINMLAL 307


>gi|269956722|ref|YP_003326511.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305403|gb|ACZ30953.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 855

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/514 (43%), Positives = 314/514 (61%), Gaps = 28/514 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ I  + +  EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++
Sbjct: 11  EPFDEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDR 70

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK +R+ GEVMGK HPHG+ AIYDAL R+AQD+SLRL L++G GNFGS+D D PAA R
Sbjct: 71  PYVKSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLD-DGPAAPR 129

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   +  +   L +D VDF PNYD    +P VL +  PN+LVNG  GIAVGMATN
Sbjct: 130 YTEARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATN 189

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV     ++ NP   L+ +M  + GPD PTG  I+G  GI++AY +GRG+  
Sbjct: 190 MAPHNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIVGLDGIRDAYRSGRGTFR 249

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
            R  + IE  +  R  I +TE+PY V    ++EKIA+ V+ K+I  +A+++D +DR  G 
Sbjct: 250 TRATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGM 309

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+K G   + +L QLYR T L+  F +N VAL G +P    L+ +L+ +V  R EV
Sbjct: 310 RLVVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALVGGQPRTLGLLELLRVWVEHRIEV 369

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L K ++R H++ GL +A+ ++DEV+++IR S +   AR  LM          
Sbjct: 370 VRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLM---------- 419

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D+ D                LSE Q   IL+L+L RLT   R ++  E + L  EI    
Sbjct: 420 DVFD----------------LSEPQATYILDLQLRRLTKFSRIELEKEQSELEKEIAALE 463

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           +IL S + L  ++  E+  V     TPRRT +++
Sbjct: 464 EILGSDAVLRRVVSTEMGDVAATYGTPRRTVLLD 497


>gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5]
 gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5]
          Length = 737

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/549 (40%), Positives = 335/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ + LR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YD +  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +ID+P  +++ +M  I+GPDFPTG +I+ +  + N AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---MMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AI   RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAIFNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  ++K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIRTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
 gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
          Length = 773

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/601 (39%), Positives = 349/601 (58%), Gaps = 32/601 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG 
Sbjct: 23  LGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGDVMGN 82

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+
Sbjct: 83  YHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEAMLE 142

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L ++ VDFR NYDG+  EPVVL A++PN+L NG  GIAVGMATNIP HN+ E+VD C+ 
Sbjct: 143 GLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDACIH 202

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +I  P+   D L+  + GPDFPTG +I+     I NAY TG+G   +R   ++E      
Sbjct: 203 LIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWNVEDLGRGV 262

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADV 322
            QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+RDES  +  R++IE + +    +V
Sbjct: 263 WQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDVRDES-AEDIRLIIEPRSKNVDPEV 321

Query: 323 ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++  LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R EV+ RR+ + L K  
Sbjct: 322 LMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRAFLDHRREVLQRRSAHRLEKID 381

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W     +      D+S Y  
Sbjct: 382 HRLEVLEGFIIAFLNLDRVIDIIRYDADPKAA---LMAEDWGKKHSR----ATDESDYVP 434

Query: 442 GSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +  T   L+E+Q  AIL +RL  L  L   ++  E + L  E     D+L S +     
Sbjct: 435 PAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQSELMAERAGLEDLLDSEALQWDS 494

Query: 501 IKQELLSVKDELDTP----------RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           I ++L + K +              RRT   E   + D+  E  I RE + V  S +G++
Sbjct: 495 IIEQLRATKKQFGKDWKLDGVNVGLRRTTFAEAGEIEDVPLEAMIDREPITVVCSEMGWI 554

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + +   +   +         +  +D D    +F   T   +L F S G  Y      LP 
Sbjct: 555 RAMTGHIDLNRE--------LKFKDGDGPRFVFHAETTDRLLVFGSNGRFYTIGAVSLPG 606

Query: 609 G 609
           G
Sbjct: 607 G 607


>gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
 gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
          Length = 738

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 356/601 (59%), Gaps = 53/601 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KQAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+DD+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +ID+P  +++ +M  I+GPDFPTG +I+ +  + N AY+TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWKKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + R     V++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRNCDPQVVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  N DE+++IIR    P+      +  +W      
Sbjct: 361 VTRRSTYLLNKIQHRLEILEGLRIAYLNFDEIIKIIREEDEPKA-----IMINW------ 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L    I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLHRLEEQKIINEHSNLKKQQVILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  ++K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFV 598
             S +G+V        R+ +      S +  ++ D  T+ FI+  +T+  +L  SS G  
Sbjct: 512 ICSKMGWV--------RSFKGHNNDLSNIKYKEGD--TEKFILKAYTTDKLLIVSSEGRF 561

Query: 599 Y 599
           +
Sbjct: 562 F 562


>gi|56159852|gb|AAV80737.1| gyrase subunit A [Bacillus sp. NRRL B-23977]
          Length = 317

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 252/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|56159854|gb|AAV80738.1| gyrase subunit A [Bacillus sp. NRRL B-23973]
 gi|56159856|gb|AAV80739.1| gyrase subunit A [Bacillus sp. NRRL B-23976]
          Length = 318

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 252/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|56159860|gb|AAV80741.1| gyrase subunit A [Bacillus sp. NRRL B-23954]
          Length = 318

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 251/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|119717173|ref|YP_924138.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
 gi|119537834|gb|ABL82451.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
          Length = 826

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 268/742 (36%), Positives = 397/742 (53%), Gaps = 68/742 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    I  EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++ +V
Sbjct: 15  EEHILDTDIKQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMNDMGLRPDRGHV 74

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PPAAERYT 131
           KCARI GEVMG+ HPHG++AIYDAL R+AQ W++RL +++G GNFGS  GD PPAA RYT
Sbjct: 75  KCARIVGEVMGRLHPHGDSAIYDALVRVAQPWAMRLPMVDGHGNFGSPGGDDPPAAMRYT 134

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  +   + +DTVDF+PNYD    EP VL A  P+++VNG  GIAVGMATN  
Sbjct: 135 EARMAPPAVAMTASIDEDTVDFKPNYDSRELEPSVLPAAIPSLVVNGTTGIAVGMATNCA 194

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV     +I +P   ++ LM  + GPD PTG  I+G  G+++AY TGRG+  +R
Sbjct: 195 PHNLVEVVQALRHLITHPSATVEDLMRFVPGPDLPTGGKIVGLEGVRDAYETGRGTFRMR 254

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRV 310
             + +E  +  R+ IVVTE+PY V    ++E+I  LV+ K++  I+D++D +DR+ G R+
Sbjct: 255 ATARVESITNRRKGIVVTELPYGVGTEKVVERIKTLVQGKKLQGISDIKDLTDRENGLRL 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K G   + +L QLY++T ++  F +N VAL   +P   +L  +L+ F+  R +VV 
Sbjct: 315 VIEVKNGFVPEALLEQLYKHTPMEDTFGINAVALVDGQPRTLSLKELLQVFLDHRFDVVR 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   KA DR H++ GL IA+ ++DEV+++IR S N   A+               L
Sbjct: 375 RRSVFRRGKAADRLHLVEGLLIAILDIDEVIQLIRSSDNAAAAKER-------------L 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I + D             LSEVQ   IL++ L RLT   R ++  E + L   I+E   I
Sbjct: 422 ISVFD-------------LSEVQADYILDMPLRRLTKFSRIELEKEQDDLRRTIEELDAI 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL----------LDMEDEDCIVREDMVV 540
           ++       ++  EL  +      PRRT ++E            L++ D+ C       V
Sbjct: 469 INDDKLRWKVVSDELGEIAKTYGNPRRTVLLESAGTAVTAAAVPLEVADDPCY------V 522

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G + R   +  +  R GG+          D V      +    V   +S G + K
Sbjct: 523 YLSSTGLLART-ANADQPGRGGGRA-------SHDVVVSAVPATARGEVGGLTSAGRLVK 574

Query: 601 EKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             V  LP        P  A G  +  IL+L+ GER+  +     D        +   T+ 
Sbjct: 575 IGVLELPQLPDTANDPHLAGGLPVSEILALDPGERLLALCTLTTDGPG-----LALGTRL 629

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R        + +     ++L   DE++ +VE  T    +   T   Q + F   A+
Sbjct: 630 GTVKRVNPE---VLGKDDWEVIRLADGDEVVGAVELRTGHETLCFITTDAQLLHFGAEAV 686

Query: 714 RVFAGRNSVGVRGISLAKGDQV 735
           R   GR+  G+ GI +  G++V
Sbjct: 687 RP-QGRSGGGIAGIRVTTGERV 707


>gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15]
 gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15]
          Length = 759

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 248/644 (38%), Positives = 362/644 (56%), Gaps = 67/644 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +T+ +   YL YA++ I  RA+PD+RDGLKPVHRR+L+ M  M +  +    KCA
Sbjct: 18  ILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ GEVMG +HPHG+A+IYDAL R+AQ++S R+ L+EGQGNFG++DGD  AA RYTEC++
Sbjct: 78  KVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKM 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  LLD + +D VDFRP YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 138 TEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNA 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E++D C  ++ NPD     L+E + GPDFPTG VI+  R  +   Y TGRG + +R   
Sbjct: 198 AELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKW 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES  +  R+V+E 
Sbjct: 258 EKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDES-AEDIRLVLEP 316

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
           K +    +V++  L++ ++L+S F VN+  L+    P    +   L AF+A R EV+ RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K   R H+L GL IA  NLDEV+RI+R+   P+                + LI+
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPK----------------EKLIE 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L+++Q  AIL  RL +L  L   +IR E   L  E    L +L+
Sbjct: 421 -------------TFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILAMLA 467

Query: 493 SRS---RLLGI----IKQELLSVKDELDTPRRT----RIVEGLLDMEDEDC-----IVRE 536
           S +   +L+G+    ++  LL +K  LD P  T    R V G     D D      IVRE
Sbjct: 468 SEAKQWKLVGVGLSEVRAALLKIKHPLDKPAPTGVTGRSVFGEAPQVDADAAIEAMIVRE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFF 592
            + + +S  G++            R  KG+    S +  ++ D +  L    T   +L F
Sbjct: 528 PITIILSERGWI------------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKLLIF 575

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           SS G  +     +LP  S +  G+ +  ++ L+   +I  + PF
Sbjct: 576 SSDGRFFTLGCDKLP--SARGHGEPVRMMIELDDKVKIIDVFPF 617


>gi|332148498|dbj|BAK20098.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 304

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/303 (61%), Positives = 246/303 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQS 335
           LQ+
Sbjct: 301 LQT 303


>gi|160905666|gb|ABX52391.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905588|gb|ABX52352.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905590|gb|ABX52353.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905664|gb|ABX52390.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|327335380|gb|AEA49885.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 303

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/303 (60%), Positives = 245/303 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMA
Sbjct: 1   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS 
Sbjct: 61  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I 
Sbjct: 121 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIP 180

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++
Sbjct: 181 GPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLI 240

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N+
Sbjct: 241 EKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL 300

Query: 342 VAL 344
           +AL
Sbjct: 301 LAL 303


>gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 738

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/550 (40%), Positives = 336/550 (61%), Gaps = 42/550 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIV 249
            HNL E+ D  V +ID +P  +++ +M  I+GPDFPTG +I+ +  + N AY TGRGS+ 
Sbjct: 182 PHNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R
Sbjct: 242 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIR 300

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREE 367
           ++IE + R     +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ 
Sbjct: 301 LIIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQN 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +M+R       
Sbjct: 361 IVTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---MMER------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q  AIL  RL  L  L   +I NE  +L  +    
Sbjct: 411 -------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHGNLQKQQAIL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMV 539
            +IL++   L  ++K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + 
Sbjct: 452 EEILNNPKELWKVVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPIT 511

Query: 540 VTVSHLGYVK 549
           +  S +G+V+
Sbjct: 512 IICSKMGWVR 521


>gi|160905672|gb|ABX52394.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
 gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
          Length = 736

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/549 (40%), Positives = 336/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++     +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  ++  +M  I+GPDFPTG +I+ ++  I +AY TGRGS  +
Sbjct: 182 PHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + R     +++  L++ T+L+S   +NM  +     P+   ++ +L+ F++ R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +MQR        
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---MMQR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I  E ++L  +     
Sbjct: 410 ------------------FQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  ++K+E+ +V+ +  L+T    RRT   +  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|298252230|ref|ZP_06976033.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546822|gb|EFH80690.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 840

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 284/887 (32%), Positives = 451/887 (50%), Gaps = 92/887 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E GI     +  M  ++ TY ++V+  RA+PD RDGLKPV RRIL GM +     ++  V
Sbjct: 13  ETGIIQEDFSVIMAQAFATYGLSVVTDRALPDARDGLKPVQRRILAGMREARYLASRPTV 72

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A + G ++G YHPHG+ ++YDA  RMAQ +++R  LIEGQGN GS DGD PAA RYTE
Sbjct: 73  KSAEVVGLILGNYHPHGDTSVYDAAVRMAQPFTMRYPLIEGQGNMGSEDGDAPAAYRYTE 132

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            RL   A  L+ D+ ++TV   P Y  D   QEP  L  R P V VN   GIAVG++TNI
Sbjct: 133 MRLSPLAEALMADMERETVPLHPTYKQDPRVQEPDYLPGRIPPV-VNPSSGIAVGLSTNI 191

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+  C+A++D PD+ +D LM  I GPDF  G  I+G  GI++ + TG+G I++
Sbjct: 192 PPHNLGEVLRACIALLDRPDMTVDELMGYIPGPDFSQGGHIIGTEGIRDYFTTGKGRIIV 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R    +E+T   R  +VVT IP           I      K    +ADLRDESD  +G R
Sbjct: 252 RAEVRLEETPRSR-ALVVTRIPPTGRDKVKASIIKAFNARKLEGMMADLRDESDTEKGTR 310

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFVA 363
           +V+EL++   A   L QLYR T LQ   S  MV L G       +P++  ++ +L  + A
Sbjct: 311 IVLELRKDVDAAQTLEQLYRETDLQIAISFQMVFLFGSPMQAARQPKQTGMLELLNYWNA 370

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + +++ RR +Y L KAR+R HV+ GL    A+ +E+V+I + S +  +ARR + +R   
Sbjct: 371 HQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEIVKIFQQSEDRASARRAIEER--- 427

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                          Y+        L+E+Q+  I  + L+++T L     + E + L   
Sbjct: 428 ---------------YS--------LTEIQSDVIASMTLSQVTKLDSGKYQRERDELQRR 464

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIV---REDMV 539
           I+E  ++L++R  L+ ++K+E+  +  +    RRT I VEG              RE + 
Sbjct: 465 IEELENLLANRRALISLLKKEMQQLMRQFADERRTYIDVEGQPHAPITHVASLHEREPLT 524

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  +  G +K +    ++ +++ G      V  DE     +   +T   +L  SS G V+
Sbjct: 525 VAFAFPGTLKALAPDTFKPKQKNGVLAYNPVRGDEQL-RQVVATTTRDYLLCMSSTGRVF 583

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +    RLP+ +  A+G+ + ++L L  GE I  ++P    ++   + Y+V  ++ G V++
Sbjct: 584 QVGSHRLPLVTRSAKGEVIRDLLELAPGEEIVAVVPI---DAYDEDRYMVTFSRLGKVKK 640

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           + LS++  ++  G   MKL   D +++      + +  +TT   Q +RF   A+R   GR
Sbjct: 641 SPLSEYKTVDIDGAQDMKLAEGDSVVTALLSRGQGEYFVTTDYAQTLRFSDEALRA-QGR 699

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              GV  I+LAKG  V+         A Y E                             
Sbjct: 700 VGQGVAAIALAKGGGVV-------VSASYYE----------------------------- 723

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +G + +E   E+  +   +L V+E+G  K+     +    R+  G+  T++   + + 
Sbjct: 724 -PQGTVVDETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGGVVTTEIGDKDRV- 781

Query: 840 ALVAVFPVNDNDQIIL-----VSDKGT-LIRVPVNEIRIASRATKGV 880
            L+++  VN+ D ++L       +KG   + +PV+E++   R  +GV
Sbjct: 782 -LLSML-VNEQDHLLLGWTGRNGEKGEHALVLPVSEVKAFPRVKQGV 826


>gi|160905552|gb|ABX52334.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905608|gb|ABX52362.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905616|gb|ABX52366.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905618|gb|ABX52367.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905626|gb|ABX52371.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905628|gb|ABX52372.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|315502966|ref|YP_004081853.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409585|gb|ADU07702.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 829

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 288/812 (35%), Positives = 414/812 (50%), Gaps = 78/812 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK ARI G+
Sbjct: 28  LVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKSARIVGD 87

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA RYTE R+ + A 
Sbjct: 88  VMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEARMSREAM 146

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L  +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+  HNLGEVV 
Sbjct: 147 LLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVVQ 206

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               +I++PD  LD LME + GPD PTG ++LG   ++ AY TGRG + +RG   I    
Sbjct: 207 AARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVRMRGRVEIGPLE 266

Query: 261 GD--REQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIELKR 316
           G   R+ I VTE+PY V    ++  I  E+ + KR+  IAD++D +DR+ G R+V+E K 
Sbjct: 267 GSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTRLVVECKV 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G +   +L  LYR T L+  F VN + L   +P    L  +L  F+A R EVV RR+ Y 
Sbjct: 327 GVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKELLDVFLAHRYEVVTRRSAYR 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
             K  +R H++ GL IA+ ++D VV++IR S + + A+  LMQR                
Sbjct: 387 KRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q   IL+  L RLT   R ++  E   L  EI E   IL     
Sbjct: 431 ----------FKLSEIQATYILDTPLRRLTKYDRLELEAEQEKLRGEIAELSKILDDEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTVS 543
           L  ++  EL +V  +   PRRT +V+             G L++ D+ C       V +S
Sbjct: 481 LRKVVSDELAAVVKQFGAPRRTTLVDGDLKEVLAASVPAGPLEVADDPC------QVILS 534

Query: 544 HLGYV-KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
             G V +    S   A+ R   GR        D V  +   +    VL  +S G  +K  
Sbjct: 535 ATGLVARTAAESEEAAEARRRSGRV-----KHDAVRAIVHSTARGRVLLVTSAGRAFKID 589

Query: 603 VWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP+   Q+       G +   ++ L  GE +  + P     S+  +  +   T+ G 
Sbjct: 590 VLPLPVLPEQSGTVSLRGGMSAAELVPLEPGETVVGLAPL--GPSAQGSPGLALGTRAGV 647

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRV 715
           V+       ++ +    I+++    DE++     T   + L   +     +RF  S +R 
Sbjct: 648 VKVCAPDWPVRSDEFEVISLR--DGDEVIGATWLTDGAETLAFVSSEASLLRFAASVVRP 705

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G    G+ GI+L  G + +    +   D+ + E +             +G T ++T  
Sbjct: 706 -QGLKGGGMAGINLPAGARAVFFGAIRTDDSKHGEPMVVTS---------TGATVKVTPF 755

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           K   +        R Q   LK +  L+V+  G
Sbjct: 756 KAYPAKGRATGGVRAQRF-LKGELELSVAWIG 786


>gi|227431864|ref|ZP_03913888.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352406|gb|EEJ42608.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 812

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 256/739 (34%), Positives = 399/739 (53%), Gaps = 47/739 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q    ++  Y K A
Sbjct: 5   ITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDRNTYDHPYRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE RL
Sbjct: 65  KSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP HNL
Sbjct: 125 SKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+    + ++D+P   L  LM  ++GPDFPTG ++ G  GIK AY TGRG IV+R  + 
Sbjct: 185 KEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGIVQGLDGIKKAYKTGRGKIVVRAKTE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I      +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIEL 
Sbjct: 245 ISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVIELS 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF++FR+EVV++R+ Y
Sbjct: 305 KEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLKRSAY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL   ++ LDEVV  IR S N    R++  Q            +LI+
Sbjct: 365 ELTKAQARQHIVEGLIRMLSILDEVVATIRASKN----RKDATQ------------NLIN 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              +T          + Q  AI+ L+L RLT      +  E + L  +I     I+   S
Sbjct: 409 HFEFT----------QAQAEAIVTLQLYRLTNTDVTQLEEEFSQLNDKINRLNQIIHEES 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            L  +I++E+ ++     +PRR+ I   VE L+ ++    I  ED+ V VS  GY KR  
Sbjct: 459 ALKDVIREEIKAITKAYSSPRRSVIEAEVENLV-IDTAVTIAEEDVQVLVSRNGYYKRAS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  ++A        +G  + ++D V     ++T   +  F++ G V    V  LP    +
Sbjct: 518 LRSFKA----SDNENG--LAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWK 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+     LS N  +    I     D       + +  +  G +++  L D +      
Sbjct: 572 DTGEHFSQQLS-NWDKDEVVIKAIAVDNLEQGGAFTI-VSNDGFIKQTTLVDIVPKAYKK 629

Query: 673 KIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           K +M +  + ++  V      +   ++N +LL+ K G  +R+ I  +     R S GV+ 
Sbjct: 630 KSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHK-GVGLRYAIKEVPEIGSRTS-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L + D  I  A+ +  D
Sbjct: 688 MDL-RDDDTIKAALFITDD 705



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +K Q +L +S KG G R +  +   I +R+  G++A D+   + I A  A+F  +D   +
Sbjct: 653 VKRQNVLLLSHKGVGLRYAIKEVPEIGSRTS-GVKAMDLRDDDTIKA--ALFITDDKQSV 709

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +V++ G    +PV+ I  + R  KGV++F+  K
Sbjct: 710 AIVAENGAFKYMPVSLINHSKRGNKGVLVFTQKK 743


>gi|284803679|emb|CBJ21245.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 317

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/317 (59%), Positives = 250/317 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSKREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRCGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|56159868|gb|AAV80745.1| gyrase subunit A [Bacillus sp. NRRL B-41004]
          Length = 320

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/310 (60%), Positives = 247/310 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRXLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 181 DITIQELMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 241 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 300

Query: 330 YTSLQSLFSV 339
            T+LQ+ F +
Sbjct: 301 QTALQTSFGI 310


>gi|284049789|emb|CBJ16553.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTARQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|56159834|gb|AAV80728.1| gyrase subunit A [Bacillus subtilis]
          Length = 317

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/309 (59%), Positives = 248/309 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMA
Sbjct: 8   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 67

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS 
Sbjct: 68  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 127

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LME+I 
Sbjct: 128 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIP 187

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++
Sbjct: 188 GPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLI 247

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N+
Sbjct: 248 EKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL 307

Query: 342 VALNGYKPE 350
           +AL   +P+
Sbjct: 308 LALVDGQPK 316


>gi|332148494|dbj|BAK20096.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 303

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/302 (60%), Positives = 245/302 (81%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QS 335
           Q+
Sbjct: 301 QT 302


>gi|28916620|gb|AAO59543.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/305 (60%), Positives = 244/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+G + AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 182 IPGPDFPTAGQILGRSGFRKAYKSGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 241

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA  VR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 242 LIEKIAVSVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 301

Query: 340 NMVAL 344
           N++AL
Sbjct: 302 NLLAL 306


>gi|284049783|emb|CBJ15409.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/310 (60%), Positives = 247/310 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVA 343
           Q+ F +N++A
Sbjct: 301 QTSFGINLLA 310


>gi|331678181|ref|ZP_08378856.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
 gi|331074641|gb|EGI45961.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
          Length = 344

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/322 (59%), Positives = 248/322 (77%), Gaps = 1/322 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307

Query: 315 KRGASADVILNQLYRYTSLQSL 336
           KR A  +V+LN LY  T LQ L
Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVL 329


>gi|167766556|ref|ZP_02438609.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|167711679|gb|EDS22258.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|291558594|emb|CBL37394.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SSC/2]
          Length = 750

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/754 (33%), Positives = 418/754 (55%), Gaps = 51/754 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+EHII ++            ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M
Sbjct: 1   MSEHIIKAE-----------FSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSM 49

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+ +++ + K ARI G+ MGKYHPHG+++IY++L  M+QD+   + L++G GNFGS+
Sbjct: 50  DELGLRYDRPHRKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSI 109

Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RLQK      L DL K+ VDF  N+D + +EP VL  + PN+LVNG 
Sbjct: 110 EGDGAAAMRYTEARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGA 169

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM T+IP HNLGEVVD   A +    I  + LME I+GPDFPTG +++ +  + N
Sbjct: 170 DGIAVGMTTSIPPHNLGEVVDAVKAYMRKESITNEELMEYIKGPDFPTGGLVINKKDLLN 229

Query: 240 AYATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIV 294
            Y++G G + +RG    E  K  G+++++V++EIPY +   N +  L     L+  K   
Sbjct: 230 IYSSGTGKLKLRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTT 289

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           DI D+ +ES + G R+V+EL++GA  + + N LY+ T L+  F VNM+A+   +PE   L
Sbjct: 290 DILDISNESSKDGIRIVLELRKGADVERLKNLLYKKTKLEDTFGVNMLAIVDGRPETLDL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            GI++    F  EV  R+ K LL+K  ++  +  GL  A   +D ++ IIR S + +  +
Sbjct: 350 KGIIENHTQFYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMIDLIIEIIRGSKSQKEVK 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L +      + K    +I+ +  +         ++ Q  AIL+L+L RL GL    ++
Sbjct: 410 ACLTKGDVGNINFKSSDSMIEATKLS--------FTDKQASAILDLKLYRLIGLEILMLK 461

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E   +  +I+E  DIL++   L  +I++EL  +K E    RRT + +G   +     + 
Sbjct: 462 EEYEEILAKIEEYEDILNNEKSLKNVIRKELDKIKKEFGRERRTVVEDGKEAVYVAAPVK 521

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E +   +   GY K +  + Y+  +         ++++  F+           +  F++
Sbjct: 522 EETVYFVMDRFGYSKTMDKATYQRNKEN-------ILKEYKFIVPCM---NTDKICIFTN 571

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATK 653
           LG +++ KV  +P G  + +G  + N+ + +   E I  ++    D  S  +  ++FAT 
Sbjct: 572 LGVMHQIKVLDIPAGKFRDKGVPIDNLCNYDSTKEYIIQVL----DAESMIHSSLLFATA 627

Query: 654 HGNVRRNKLSDFIQINRSGKI--AMKLDSRDEILSVETCT----QENDILLTTKLGQCVR 707
              +   K+ D   +N + +   A KL S DE++ V         E+ ++L TK G  ++
Sbjct: 628 KSML---KVMDGELLNAAKRTVQATKL-SEDELIEVIPIDWMEGSEDKVVLQTKEGVFLK 683

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           F +S I     ++++GVRG+ L+K D + ++ ++
Sbjct: 684 FLLSEIPK-KKKSALGVRGMKLSKDDSLTNIYVM 716


>gi|332148484|dbj|BAK20091.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 302

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/301 (61%), Positives = 244/301 (81%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 S 335
           +
Sbjct: 301 T 301


>gi|28572429|ref|NP_789209.1| DNA topoisomerase IV subunit A [Tropheryma whipplei TW08/27]
 gi|28410560|emb|CAD66947.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
          Length = 821

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 318/515 (61%), Gaps = 32/515 (6%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +IS +E+    IT V +  +MQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG
Sbjct: 11  VISDNEK----ITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMG 66

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K +VKCAR++GEVMGK HPHG+AAIYD L RM+QD+++R+ LI+G GNFGS++ D 
Sbjct: 67  LSPDKAHVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLN-DG 125

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL +AA  +++DL  + VDF PNYD  F +P VL A  PN++VNG  GIAV
Sbjct: 126 PAASRYTEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAV 185

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMAT+IP HNL E V   + ++ N    L+ +M+I+ GPDFPTG++I+G+   K  YATG
Sbjct: 186 GMATSIPPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATG 245

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GS  IR    I+        +V+TE+PY V    ++EKI + V   RI  I D+ D SD
Sbjct: 246 KGSFKIRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSD 305

Query: 305 RQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+ G ++VI +K   S + +++ LYR+T L+  FSVN VAL   KP+   ++ +LK F+ 
Sbjct: 306 RKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFID 365

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  V+ RR+K+ L   + R H++ GL +A+ ++D+ + IIR S   + AR+ LM+    
Sbjct: 366 HRVCVITRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMK---- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                  + ++  Q   IL++RL  LT L    +++E   L   
Sbjct: 422 ----------------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKT 459

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
            ++  +ILS  +++  I+  EL  V   L +PRRT
Sbjct: 460 TQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRT 494


>gi|296111946|ref|YP_003622328.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833478|gb|ADG41359.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 812

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 255/735 (34%), Positives = 396/735 (53%), Gaps = 45/735 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K A
Sbjct: 5   ITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GS+D DP AA RYTE RL
Sbjct: 65  KSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSIDNDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP HNL
Sbjct: 125 SKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+      ++D+P+  L  LM  ++GPDFPTG +I G  GIK AY TGRG IV+R  + 
Sbjct: 185 KEINAALTYLLDHPEAPLSTLMRYVKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAKTA 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G +++I VTE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIEL 
Sbjct: 245 ISELKGGKKKIEVTELPYEVVKSNLVSKIDGIRLNKEVAGISEVRDESDREGMSIVIELT 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF+ FR+EVV++R+ Y
Sbjct: 305 KDANAEGILTYLFKKTDLQIAYNFNMVAIHDQRPVHVGLKQGLQAFLGFRKEVVLKRSAY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL   ++ LD+VV  IR S N    RR+  Q            +LI 
Sbjct: 365 ELAKAQARQHIVEGLIRMLSILDQVVATIRASKN----RRDATQ------------NLIT 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              +T          + Q  AI+ L+L RLT      +  E  +L  +I     I++  S
Sbjct: 409 QFQFT----------QPQAEAIVTLQLYRLTNTDVTQLEEEFATLAAKIDRLTLIINEAS 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            L  +I+ E+ ++     + RR+ I   VE L+ ++    I  ED+ V VS  GY KR  
Sbjct: 459 ALNDVIRDEITAITTSYRSQRRSEIEAEVEDLV-IDTAVTIAEEDVQVLVSRNGYYKRSS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y+A        S   + D+D V     ++T   +  F++ G +    V  LP    +
Sbjct: 518 IRSYKA------SDSDNGLADDDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKWK 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+     LS    +         +         +V  +  G +++  L+D +      
Sbjct: 572 DTGEHFSQQLSNWHADEFVIQAAVVDTLDQGGAFTIV--SNDGFIKQTTLNDMLPKAYKK 629

Query: 673 KIAMKLDSRDEI-----LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           K AM +  + +      +S    T   ++LL +  G  +RF ++ +     R + GV+ +
Sbjct: 630 KTAMAIKLKTDASYVVNVSYFKATATPEVLLLSHHGIGLRFKLTDVPEIGPR-TAGVKAM 688

Query: 728 SLAKGDQVISMAIVL 742
            L +GD +I  A+ +
Sbjct: 689 DL-RGDDLIMAALFI 702



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           LK D+S   N+S  +          +L +S  G G R    D         G++A D+  
Sbjct: 637 LKTDASYVVNVSYFKATATPE----VLLLSHHGIGLRFKLTDVPEIGPRTAGVKAMDLRG 692

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            + I  + A+F  +   Q+ +V+  G    +P++EI ++ RA KG++IF+  K
Sbjct: 693 DDLI--MAALFITDKTQQVAIVARNGAFKYMPISEINMSKRANKGLLIFTQKK 743


>gi|28493458|ref|NP_787619.1| DNA topoisomerase IV subunit A [Tropheryma whipplei str. Twist]
 gi|28476499|gb|AAO44588.1| DNA gyrase subunit A-like protein [Tropheryma whipplei str. Twist]
          Length = 824

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 318/515 (61%), Gaps = 32/515 (6%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +IS +E+    IT V +  +MQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG
Sbjct: 14  VISDNEK----ITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMG 69

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K +VKCAR++GEVMGK HPHG+AAIYD L RM+QD+++R+ LI+G GNFGS++ D 
Sbjct: 70  LSPDKAHVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLN-DG 128

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL +AA  +++DL  + VDF PNYD  F +P VL A  PN++VNG  GIAV
Sbjct: 129 PAASRYTEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAV 188

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMAT+IP HNL E V   + ++ N    L+ +M+I+ GPDFPTG++I+G+   K  YATG
Sbjct: 189 GMATSIPPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATG 248

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GS  IR    I+        +V+TE+PY V    ++EKI + V   RI  I D+ D SD
Sbjct: 249 KGSFKIRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSD 308

Query: 305 RQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+ G ++VI +K   S + +++ LYR+T L+  FSVN VAL   KP+   ++ +LK F+ 
Sbjct: 309 RKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFID 368

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  V+ RR+K+ L   + R H++ GL +A+ ++D+ + IIR S   + AR+ LM+    
Sbjct: 369 HRVCVITRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMK---- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                  + ++  Q   IL++RL  LT L    +++E   L   
Sbjct: 425 ----------------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKT 462

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
            ++  +ILS  +++  I+  EL  V   L +PRRT
Sbjct: 463 TQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRT 497


>gi|258611537|ref|ZP_05711543.1| parC [Listeria monocytogenes FSL N3-165]
 gi|258601050|gb|EEW14375.1| parC [Listeria monocytogenes FSL N3-165]
          Length = 470

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/491 (42%), Positives = 315/491 (64%), Gaps = 26/491 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q  ++         
Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTKYD--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT     ++++E  SL  +I     IL 
Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILG 458

Query: 493 SRSRLLGIIKQ 503
             + L+ ++K+
Sbjct: 459 DEAELIAVLKE 469


>gi|293363538|ref|ZP_06610294.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
 gi|292552887|gb|EFF41641.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
          Length = 880

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/745 (32%), Positives = 409/745 (54%), Gaps = 43/745 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++++ + I + S+   M   +  Y+  +I  RA+PD+RDGLKPVHRRIL+ M ++G+  +
Sbjct: 5   NQQKLEKIINNSLDKIMAEKFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTSD 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K AR+ G+V+GKYHPHG+ ++YDA+  M+Q W   + L++  GN GS+D DP AA 
Sbjct: 65  KPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKNGIALLDMHGNVGSLDNDPAAAM 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K  +++LDDL K+TV F PN+D S +EP VL + +PN+LVNG  GIA+GMAT
Sbjct: 125 RYTEVRMSKICNYMLDDLKKNTVSFIPNFDDSEKEPSVLPSIFPNLLVNGTTGIAIGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-GS 247
            +P HNL EV++  +A +  P I LD LME I+GPDFPTG +I G  GI  A+  G+   
Sbjct: 185 EMPPHNLNEVLEATIAKLKRPTITLDGLMEHIKGPDFPTGGIIYGNKGIFEAFYNGKLDK 244

Query: 248 IVIRGVSHIEKTSGDREQIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             I+  S+      D+ +++ +TEIP+ V K+ ++  I  L+  + I  + +++D+SDR+
Sbjct: 245 EKIKLFSNYTVKQTDKNKLIEITEIPFGVVKSQLVYDIDVLINNESIDGLLEIKDQSDRE 304

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI L + A+ + I++ L + TS+Q  +S N V ++   P+   L  +L A++A  +
Sbjct: 305 GIRIVITLSKDANEESIISFLLQKTSMQVNYSYNNVVISNNSPKLMNLNELLDAYIAHIK 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V  +   Y  NK   R  +++G        D V+++IR S   ++   + ++ S+    
Sbjct: 365 DVKTKTLTYDYNKYLLRLEIVLGFLKVAEITDAVIKVIRNSEGSKSGVIKALKESFG--- 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  S+ Q  AI ELRL RL+   +     E   L   I  
Sbjct: 422 ----------------------FSQNQATAIAELRLYRLSKTDKQAFLIEKAELEKNIAN 459

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMV-VTVSH 544
             ++LS   + +G + + L  +  E+ TPR+T+IV E      D+  +V+E++V ++ S 
Sbjct: 460 IKELLSDEKKFVGYLIELLRGIIKEIPTPRKTQIVAEEFSFNHDKKDLVKEEIVNISFSK 519

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+   +  +           ++++ED +      +T  ++L F++LG      V+
Sbjct: 520 NGYIKRLSQKIIDSN-----SPESYMLKEEDNLVFFDKSNTMHNILIFTNLGNYAIIPVY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLS 663
           ++     +  G  L + ++L  GE I  ++    D   WN   YVV  +K G  ++  +S
Sbjct: 575 KILESKWKDLGTHLSDFVALYPGESIVNVI----DVEDWNVGDYVVIMSKQGYAKKTLIS 630

Query: 664 DF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           DF   +IN+S   A+K+D  DEI++V       DIL+ T +G   ++  + + ++ G  +
Sbjct: 631 DFEVSRINKS-YTALKIDKNDEIVNVALSDGTKDILIVTAMGYTSKYNENDLNIY-GPKA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADA 746
            G + + L+  D V S  +V   D 
Sbjct: 689 KGSKAVYLSNKDYVASFEMVKFNDT 713


>gi|283783172|ref|YP_003373926.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
 gi|283440999|gb|ADB13465.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
          Length = 887

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 276/828 (33%), Positives = 445/828 (53%), Gaps = 98/828 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  +  Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ THNL
Sbjct: 140 APASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+   R  +H
Sbjct: 200 GEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGAFTTRSTTH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R  VV RR++
Sbjct: 320 KTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRRTVVRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +             LI + 
Sbjct: 380 FRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTK-------------LIKVF 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             L E+Q + IL+LRL RLT + R ++  E + L  +I+E   ILSS 
Sbjct: 427 D-------------LDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSE 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-----------VEGLLDMEDEDCIVREDMVVTVS 543
           ++L  ++  ++ S   + DTPRRT +           V   ++   ED  ++   V + +
Sbjct: 474 AKLDNVVIADMDSAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIK--AVQSAN 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKG-------------------RSGVVMRDEDFVTD----- 579
            +   +    +   A R+ G+                     SG++ R    V +     
Sbjct: 532 KITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSH 591

Query: 580 -----------LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN-------I 621
                      +F  +T ++    +S G +    V  LP  + +    AL+N       +
Sbjct: 592 NNNVFNTPCKTMFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNHGVKAQEL 651

Query: 622 LSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           L+  Q      GER+ + + F   ++S N   +   T++G V+R        ++    I 
Sbjct: 652 LTSTQSTDPVRGERVVSAIAF---DASQNATPLAIGTRNGVVKRWNFEAPTTMDSWSIID 708

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +K D  D +++       + ++  +     + F    +R   GR + G+ GI LA+G +V
Sbjct: 709 LKDD--DTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAGIRLAEGTKV 765

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSLKNDSS 780
            + A+V     ++          SA   +   ++GD+E +   +N S+
Sbjct: 766 ATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPGTENGSA 813


>gi|284803677|emb|CBJ21244.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 245/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F + ++AL
Sbjct: 301 SFGIKLLAL 309


>gi|298253939|ref|ZP_06977526.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532082|gb|EFH71057.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 887

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 276/828 (33%), Positives = 445/828 (53%), Gaps = 98/828 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  +  Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ THNL
Sbjct: 140 APASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+   R  +H
Sbjct: 200 GEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGAFTTRSTTH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R  VV RR++
Sbjct: 320 KTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRRTVVRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +             LI + 
Sbjct: 380 FRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTK-------------LIKVF 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             L E+Q + IL+LRL RLT + R ++  E + L  +I+E   ILSS 
Sbjct: 427 D-------------LDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSE 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-----------VEGLLDMEDEDCIVREDMVVTVS 543
           ++L  ++  ++ S   + DTPRRT +           V   ++   ED  ++   V + +
Sbjct: 474 AKLDNVVIADMDSAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIK--AVQSAN 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKG-------------------RSGVVMRDEDFVTD----- 579
            +   +    +   A R+ G+                     SG++ R    V +     
Sbjct: 532 KITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSH 591

Query: 580 -----------LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN-------I 621
                      +F  +T ++    +S G +    V  LP  + +    AL+N       +
Sbjct: 592 NNNVFNTPCKTMFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNHGVKAQEL 651

Query: 622 LSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           L+  Q      GER+ + + F   ++S N   +   T++G V+R        ++    I 
Sbjct: 652 LTSTQSTDPVRGERVVSAIAF---DASQNATPLAIGTRNGVVKRWNFEAPTTMDSWSIID 708

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +K D  D +++       + ++  +     + F    +R   GR + G+ GI LA+G +V
Sbjct: 709 LKDD--DTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAGIRLAEGAKV 765

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSLKNDSS 780
            + A+V     ++          SA   +   ++GD+E +   +N S+
Sbjct: 766 ATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPGTENGSA 813


>gi|28916600|gb|AAO59533.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +L RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SLVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|260437350|ref|ZP_05791166.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810262|gb|EFF69467.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 761

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/774 (33%), Positives = 413/774 (53%), Gaps = 52/774 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     +D MQ SY+ Y+++VI  RA+PD+RDGLKPV RR+L+ M ++G+ ++K + K A
Sbjct: 5   ILKTEYSDVMQKSYIDYSMSVITARAVPDVRDGLKPVQRRVLYAMNELGLNYDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  + QD+   + L++G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDAMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDVAAAMRYTEARL 124

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K      L DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGM T+IPTHN
Sbjct: 125 KKFTQDVYLKDLDKDVVDFVPNFDETEKEPSVLPVRVPNLLINGAEGIAVGMTTSIPTHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++G  A +DN DI    LME I GPDFPTG +++ ++ + + Y +G G + +RG  
Sbjct: 185 LTEVINGVEAYLDNEDITTAELMEYIPGPDFPTGGIVINKSELADIYESGVGKVKVRGKV 244

Query: 255 HIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E  K   D++++V+TEIPY +        +  + +L+  K+  DI D+ +ES ++G R
Sbjct: 245 VFEPGKKKTDKDKLVITEIPYTMIGTGIGKFISDVVDLIETKKTQDITDISNESSKEGIR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+ A    + + LY+ T L+  F VNM+ +   +PE   L  I++  V F+ E+ 
Sbjct: 305 IVLELKKNADVKKLEHLLYKKTKLEDTFGVNMLTIADGRPEVLGLRDIIRYNVEFQYEIN 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+   LL K  D   +  GL  A   +D ++ I+R S N + A+  L+         K 
Sbjct: 365 TRKYTTLLKKEYDNKEIKEGLIKACNIIDLIIEILRGSTNLKQAKNCLISGDTEGIRFK- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                  S  +      ++ +E Q  AILELRL +L GL  + +  E       I E  +
Sbjct: 424 -------SDKSEKDAKKLHFTERQATAILELRLYKLIGLEIEALEKEYEETLARIAEYEE 476

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S+  +   IK++L  +K E    R T I +G + + +E   V +++V  +   GY K
Sbjct: 477 ILGSKKVMKKTIKKDLERIKKEYGMERLTVIEDGEVAVYEEPKFVEQEVVFIMDRFGYAK 536

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            +  + +   +         +  +  +V   F       +  F+  G +++ KV  +P  
Sbjct: 537 TIDTASFERNKE-------TIYAENKYV---FKCLNTEKICIFTDNGNLHQVKVVNIPFT 586

Query: 610 SPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             + +G  + N+ + N  GE I  +    + E        +F TK G +   KL D  + 
Sbjct: 587 KFRDKGTPIDNLGNYNSAGEEIIYLCASKQLEGRK----FLFVTKQGMM---KLVDGSEF 639

Query: 669 NRSGKI--AMKLDSRDEIL------SVETCTQEND--------ILLTTKLGQCVRFPISA 712
           + S K   + KL+  D I       +V   T E+D        ++L T+ G  ++FP++ 
Sbjct: 640 DASKKTVASTKLNIGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNE 699

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVL-HAD--ADYDERICYMKHMSAQRR 763
           I     +++ GVRGI L K D++  + ++  +AD   DY  +   +K +   +R
Sbjct: 700 IPE-KKKSAAGVRGIKLEKEDKIAEVYLIPENADISIDYKGKEVSLKKLKTAKR 752


>gi|284049779|emb|CBJ15407.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 308

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/307 (60%), Positives = 245/307 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +N++AL
Sbjct: 301 GINLLAL 307


>gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
 gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
          Length = 813

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 246/632 (38%), Positives = 353/632 (55%), Gaps = 63/632 (9%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRILF M ++ +     + K A+ISG+VMG YHPH
Sbjct: 27  YLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSSTGGFRKSAKISGDVMGNYHPH 86

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  +L+ L +
Sbjct: 87  GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEAMLEGLNE 146

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VD+R NYDG+  EPVVL A++PN+L NG  GIAVGMATNIP HN+ E+ D C+ +I  
Sbjct: 147 NAVDYRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCDACIHLIKT 206

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   + L+  + GPDFPTG VI+     I NAY TGRGS  +R    +E       QIV
Sbjct: 207 PDARDETLLNYVPGPDFPTGGVIVEPPENIANAYRTGRGSFRLRCRWEVEDLGRGAWQIV 266

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES  +  R++IE + +     V++  
Sbjct: 267 VTEIPYQVQKSKLIEKIAELIQAKKIPILADVRDES-AEDVRMIIEPRSKNVDPAVLMGM 325

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           L+R + L+  FS+NM V ++G  P+  +L  +L+AF+  R EV+ RR+++ ++K   R  
Sbjct: 326 LFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEVLRAFLDHRREVLQRRSRHRMDKIDHRLE 385

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT---IG 442
           VL GL  A  NLD V+ IIR+  +P+ A   LM   W+      L   +D+++Y     G
Sbjct: 386 VLQGLITAFLNLDRVIEIIRYDDDPKAA---LMYEDWSRVHQDTLARAMDEAAYISPLAG 442

Query: 443 SD---------------GTMY------------------LSEVQTRAILELRLARLTGLG 469
            D               G +                   LS+VQ  AIL +RL  L  L 
Sbjct: 443 VDVSKLAVIADAEAQATGVLTESGDTRAVPHSYAGRENGLSDVQAEAILNMRLRSLRRLE 502

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK---------DELDTPRRTRI 520
            D +  E ++L  E     D+L +       I  +L + K         D +   +R   
Sbjct: 503 EDALVKERDTLMSERAGLEDLLDNEDLQWTTIADQLRATKKQFGKDWVIDGIKRGQRLST 562

Query: 521 VEGLLDMED---EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
            E   ++ED   E  I RE + V  S +G+++ +   +   +         +  +D D  
Sbjct: 563 FETAGEVEDVPIEAMIDREPITVVCSQMGWIRAMTGHIDLNRE--------LKFKDGDGP 614

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             +F   T   +L F S G  Y      LP G
Sbjct: 615 RFIFHAETTDRLLVFGSNGRFYTVSAANLPGG 646


>gi|284049787|emb|CBJ16552.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 314

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/313 (59%), Positives = 247/313 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYKPE 350
            +N++AL   +P+
Sbjct: 301 GINLLALVDGQPK 313


>gi|50379887|gb|AAT76296.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/313 (58%), Positives = 245/313 (78%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSL 333
           +++LN+LY+YT L
Sbjct: 309 ELVLNKLYKYTDL 321


>gi|129921061|gb|ABO31934.1| GyrA [Bacillus amyloliquefaciens]
          Length = 309

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 245/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++ KIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIGKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
 gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
          Length = 750

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/617 (38%), Positives = 349/617 (56%), Gaps = 65/617 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V + + ++  YL YA++ I+GRA+PD+RDGLKPVHRRI+  M  + ++  + Y KCA
Sbjct: 14  IQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRVLRLDPGQAYKKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMG++HPHG+AAIYDAL R+AQD+S+R  L++GQGNFG+VDGD  AA RYTE R+
Sbjct: 74  RIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNVDGDSAAAMRYTEARM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL  + ++ VDFRP Y+   +EPVVL   +PN+L NG  GIAVGMATNIP HN 
Sbjct: 134 TEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATNIPPHNA 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I+NPD  +D L+  I GPDFPTG VI+  R  I+ AY TGRGS  +R   
Sbjct: 194 AELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQAYETGRGSFRVRARW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E  +  +  +VV EIPYQV K+ ++EKIAEL++ +++  +AD+RDES  +  R+V+E 
Sbjct: 254 EREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADIRDES-AEDIRIVLEP 312

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K +    ++++  L+R T L+S   +NM  L+G K P+  +L  +L  ++A + EV+ RR
Sbjct: 313 KSKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEVLAEWLAHQREVLERR 372

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L +   R  +L G  I   N+D+V+RIIR    P   ++ELM+             
Sbjct: 373 ARHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEP---KQELMR------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+VQ  A+L +RL  L  L   ++R E + L +E  E   +L 
Sbjct: 417 -------------FFTLSDVQAEAVLNMRLRSLRKLEEFELRREFDQLTVEKAEKEALLG 463

Query: 493 SRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMEDED-------CIVREDMVV 540
           S  +    + +E+ +V++          RRTR      D  D D        I +E + +
Sbjct: 464 STEKQWSAVAEEVRAVRETFSKKTKLGKRRTRFA----DAPDHDIGDITTALIEKESVTI 519

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S  G++            RG KG     S +  R+ D +   F   T   +LF S  G
Sbjct: 520 VLSKKGFL------------RGMKGHLADFSNLTFREGDGLNIAFHAMTTDKLLFVSKHG 567

Query: 597 FVYKEKVWRLPIGSPQA 613
            V+  +  +LP G  Q 
Sbjct: 568 RVFTMQADKLPGGRGQG 584


>gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
 gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
          Length = 769

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 353/612 (57%), Gaps = 25/612 (4%)

Query: 9   DEEEEKGITSV-SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           D+    G TS   ++  + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  
Sbjct: 6   DDPNMGGDTSAEPLSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSA 65

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             ++ K ++ISG+VMG +HPHG+ AIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA
Sbjct: 66  GGRFRKSSKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAA 125

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  +++ L ++ VDFR NYDG+  EPVVL A  PN+L NG  GIAVGMA
Sbjct: 126 SRYTEARLTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGASGIAVGMA 185

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
           TNIP HN+ E+ +  + +I  PD   + L+  + GPDFPTG  ++  R  +  AY TGRG
Sbjct: 186 TNIPPHNIEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAEAYRTGRG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R     E     + QIVVTEIPYQV K+ ++EKIAEL++ KR+  +AD+RDES   
Sbjct: 246 SFRLRAKWEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADIRDES-AD 304

Query: 307 GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAF 364
             R+++E + +    DV++N L+R + L+  FS+NM V ++G  P+  +L  +L+AF+  
Sbjct: 305 DIRMILEPRSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDH 364

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EV++RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W+ 
Sbjct: 365 RREVLLRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMAEDWSV 421

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              +   +   D    IG D    LSEVQ  AIL +RL  L  L   ++  E ++L  E 
Sbjct: 422 KRGRAASEA--DYVSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRERDALMEER 479

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVRED 537
               D+L S       I  ++  V+           RRT I E   + ++  E  I RE 
Sbjct: 480 AGLEDLLESEDLQWVRISDQIREVRKTFGAKSEGGARRTLIEEAGEVEEVPLEAMIEREP 539

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V  S +G+V+ +   +   Q+        +  +D D     F   T   +L F + G 
Sbjct: 540 ITVVCSRMGWVRAMKGHIDLTQK--------LKFKDGDEGRFAFHAETTDRLLVFGTNGR 591

Query: 598 VYKEKVWRLPIG 609
            Y      LP G
Sbjct: 592 FYTVSASNLPGG 603


>gi|300173092|ref|YP_003772258.1| DNA topoisomerase IV subunit A [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887471|emb|CBL91439.1| DNA topoisomerase IV, A subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 812

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/742 (34%), Positives = 403/742 (54%), Gaps = 51/742 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K A
Sbjct: 5   ITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTFDHPYRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY+A+ R++Q+W +R  LI+  GN GSVD DP AA RYTE RL
Sbjct: 65  KSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSVDNDPAAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ DLG++TVD   N+D +  EP VL +R  ++ +NG  GI+ G AT IP HNL
Sbjct: 125 SKIAGEMMTDLGQETVDMVLNFDDTTYEPTVLPSRVLSLFINGATGISAGYATEIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+      ++D+P+  L ALM  ++GPDFPTG +I G  GIK AY TGRG IV+R  + 
Sbjct: 185 KEINGALTYLLDHPEAPLSALMRYVKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAKTV 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I +  G +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIEL 
Sbjct: 245 ISEIKGGKKKIEITELPYEVVKSNLVAKIDGIRLNKEVAGISEVRDESDREGMSIVIELN 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  IL  L++ T LQ  ++ NMVA++  +P   +L   L+AF+ FR+EVV++R+ Y
Sbjct: 305 KDVNAAGILTYLFKKTDLQIYYNFNMVAIHDQRPVHVSLKQGLEAFLNFRKEVVLKRSAY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ R H++ GL   ++ LDEVV  IR S N    R++  Q            +LID
Sbjct: 365 ELAKAQARQHIVEGLIRMLSILDEVVATIRASKN----RKDATQ------------NLID 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              +T          + Q  AI+ L+L RLT      +  E  +L  +I     I++  S
Sbjct: 409 SYQFT----------QPQAEAIVTLQLYRLTNTDVTQLEEEFATLAAKIVRLNLIINESS 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            L  +I+ E+  +     +PRR+ I   VE L+ ++    I  ED+ V VS  GY KR  
Sbjct: 459 ALNDVIRDEIAEITTTYRSPRRSEIEAEVENLI-IDSAITIAEEDVQVLVSRNGYYKRAS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+A        S   + ++D       ++T   +  F++ G +    V  LP    +
Sbjct: 518 LRSYKA------SDSDNGLAEDDLAIFEGQLNTTQHLFMFTNKGNIIYRPVHELPDSKWK 571

Query: 613 ARGKALINILS-LNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666
             G+     LS  +  E +  ++     E E ++        T  G +++  LSD +   
Sbjct: 572 DTGEHFSQQLSNWHADEFVIKVIAIDNLEQEGAF-----TVVTNDGFIKQTILSDMVPKA 626

Query: 667 -QINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +   S  I +K DS   + ++     ++ D+LL +  G  +RF ++ +     R + GV
Sbjct: 627 YKKKTSMAIKLKTDSSYVVGIAYFKQAKQQDVLLLSHDGVGLRFKVTDVPEIGPR-TAGV 685

Query: 725 RGISLAKGDQVISMAIVLHADA 746
           + + L +G   I  A+ +  D+
Sbjct: 686 KAMDL-RGTDTIMAALFITNDS 706



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           LK DSS    I+  +    + K+Q +L +S  G G R    D         G++A D+  
Sbjct: 637 LKTDSSYVVGIAYFK----QAKQQDVLLLSHDGVGLRFKVTDVPEIGPRTAGVKAMDLRG 692

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            + I  + A+F  ND+ Q+ +V+  G    +P++EI  + RA KG++IF+  K
Sbjct: 693 TDTI--MAALFITNDSQQVAIVASNGAFKYMPISEINRSKRANKGLLIFTQKK 743


>gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C]
 gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C]
          Length = 736

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 335/549 (61%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++     +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  ++  +M  I+GPDFPTG +I+ ++  I +AY TGRGS  +
Sbjct: 182 PHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + R     +++  L++ T+L+S   +NM  +     P+   ++ +L+ F++ R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+     +MQR        
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---MMQR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I  E ++L  +     
Sbjct: 410 ------------------FQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
           +IL++   L  ++K+E+ +V+ +  L+T    RRT   +  L  +  D    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+V+
Sbjct: 512 ICSKMGWVR 520


>gi|302552702|ref|ZP_07305044.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470320|gb|EFL33413.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 685

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 269/734 (36%), Positives = 395/734 (53%), Gaps = 102/734 (13%)

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNL EV  G    ++NP+      LDAL+E I+GPDFPTGA+++GR GI+ AY 
Sbjct: 12  ATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYR 71

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE
Sbjct: 72  TGRGSITMRAVIEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDE 130

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +
Sbjct: 131 TSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHW 190

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM   
Sbjct: 191 VTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARHGLM--- 247

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                     DL++             + E+Q  AILE++L RL  L R  I  E + L 
Sbjct: 248 ----------DLLE-------------IDEIQANAILEMQLRRLAALERQKIVQEHDELQ 284

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+VVT
Sbjct: 285 AKISEYNEILASPVRQRGIVSEELAAIVEKYGDDRQTKLIPYEGDMSIEDLIAEEDIVVT 344

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ 
Sbjct: 345 VTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRV 404

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     ARG+ + N+L+    E I  I+   + E+     Y+V ATK G V++  
Sbjct: 405 KGYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAV---PYLVLATKAGLVKKTP 461

Query: 662 LSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714
           L D+      G IA+ L      S DE++  E  + ++D+LL +K  Q +RF  S   +R
Sbjct: 462 LKDYDSPRSGGVIAINLRSMEDGSDDELIGAELVSSDDDLLLISKKAQSIRFTASDETLR 521

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+S  +GD+++SM +V                           T   T+
Sbjct: 522 PM-GRATSGVKGMSFREGDELLSMNVVRPG------------------------TFVFTA 556

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +   N+ E R Q                              R G GI+A  +  
Sbjct: 557 TDGGYAKRTNVDEYRVQ-----------------------------GRGGLGIKAAKI-- 585

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + +  K + VV +
Sbjct: 586 VEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINLGKRDAVVGI 645

Query: 895 ERI----RESEIVD 904
            R     RE+E VD
Sbjct: 646 ARNAEAGREAEEVD 659


>gi|28916592|gb|AAO59529.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 266/741 (35%), Positives = 394/741 (53%), Gaps = 80/741 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI S+++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  + ++    + KC
Sbjct: 11  GIESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGSGFKKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  LI+GQGNFG+VDGD  AA RYTE R
Sbjct: 71  ARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDNAAAMRYTEAR 130

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LLD L ++ VDFR  YDG  +EP+VL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 131 MTDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSSGIAVGMATSIPPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGV 253
             E+ + C  +I NP+ +   L+E I+GPDFPTG +++   G I+ AY TGRGS  +R  
Sbjct: 191 AFELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIREAYETGRGSFRVRAR 250

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E     +  IVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES      V++ 
Sbjct: 251 WEVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDESAEDIRIVLVP 310

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             R   A++++  L++ T L++ FS+NM  L+ G  P    L  +L+ ++  R+EV++RR
Sbjct: 311 RSRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVLREWLDHRKEVLIRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L +   R  VL G  +A  NLDEV+RIIR    P+    ELMQ             
Sbjct: 371 SEYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKA---ELMQ------------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  LS+VQ  AIL +RL  L  L   +IR E + L  E  +   +L 
Sbjct: 415 -------------TFELSDVQAEAILNMRLRSLRKLEEMEIRKEHDKLSAEKDDLTKLLG 461

Query: 493 SRSRLLGIIKQELLSVKDELDTP------RRTRIVEG----LLDMEDEDCIVREDMVVTV 542
           S +R    I +E+  +  ++  P      RRT   E     L+D++ +  I +E + V +
Sbjct: 462 SDARQWTKISKEIADIS-KVYGPETEIGKRRTDKSEAPETDLIDIQ-QAMIEKEPITVII 519

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++        RA +      SGVV +  D +       T   +L FS+ G  +   
Sbjct: 520 SEKGWI--------RAMKGHQTDLSGVVFKQGDKLKLSLHAETTDKILLFSTGGKFFTLG 571

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             RLP G  +  G+ +  ++ +++ + +              NL +      G V     
Sbjct: 572 ADRLPGG--RGHGEPIRLMVEMDEAQDVVNAFV----HKPGRNLLLATTEARGFVVSE-- 623

Query: 663 SDFIQINRSGKIAMKLDSRDEI-LSVETCTQ------ENDILLTTKL--------GQCVR 707
            D +   R GK  + L +  E  + VE          EN  LL   L        G+ VR
Sbjct: 624 DDVVANTRKGKQVLNLSAPAEASICVEASGDHVAIIGENRKLLVFPLVQIPQMGRGRGVR 683

Query: 708 FP------ISAIRVFAGRNSV 722
                   IS IRVF G + +
Sbjct: 684 LQRYRDGNISDIRVFKGEDGL 704


>gi|50379830|gb|AAT76293.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/313 (58%), Positives = 245/313 (78%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GE
Sbjct: 9   IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE R++K   
Sbjct: 69  VLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNLGE+VD
Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG   IE+  
Sbjct: 189 GILALIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIEAYKTGRGKIKVRGKVDIEEQK 248

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G   
Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308

Query: 321 DVILNQLYRYTSL 333
           +++LN+LY+YT L
Sbjct: 309 ELVLNKLYKYTDL 321


>gi|56112326|gb|AAV71141.1| GyrA [Bacillus amyloliquefaciens]
          Length = 311

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/307 (60%), Positives = 245/307 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            II GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 GIIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +N++AL
Sbjct: 301 GINLLAL 307


>gi|146217173|gb|ABQ10651.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 245/306 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+
Sbjct: 1   VRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           + R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EP
Sbjct: 61  NYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           VV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPD
Sbjct: 121 VVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKI
Sbjct: 181 FPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKI 240

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           A+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL
Sbjct: 241 ADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLAL 300

Query: 345 NGYKPE 350
              +P+
Sbjct: 301 VDGQPK 306


>gi|311742662|ref|ZP_07716471.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
 gi|311314290|gb|EFQ84198.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
          Length = 822

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 270/726 (37%), Positives = 391/726 (53%), Gaps = 76/726 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I    I +EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M  MG+  ++
Sbjct: 11  EEFDEHIVDTDIREEMRASFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDDMGLRPDR 70

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK AR  G+VMG+ HPHG++AIYDAL R+ Q WS+R+ LI+G GNFGS D DPPAA R
Sbjct: 71  GHVKSARPVGDVMGRLHPHGDSAIYDALVRLVQPWSMRVPLIDGHGNFGSPD-DPPAAMR 129

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECR+  AA  +   + +DTVDFRPNYDG   EPVVL A  PN+LVNG  GIAVGMATN
Sbjct: 130 YTECRMDPAAQAMTASIDEDTVDFRPNYDGRETEPVVLPASLPNLLVNGASGIAVGMATN 189

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HNL EVV     +I +P+ DLD LM  I GPD PTG  I+G  G+++AYATG GS  
Sbjct: 190 IAPHNLVEVVQALRHLIGHPEADLDDLMRFIPGPDLPTGGKIVGLDGVRDAYATGNGSFK 249

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GY 308
           +R  + +E+  G R+ IV++E+PY V    ++E + +LV+ K++  IADL++ +DR  G 
Sbjct: 250 MRATARVEQV-GRRKGIVISELPYNVGPEKVIEAVKKLVQSKKLQGIADLKNLTDRHSGL 308

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            +VIE+K G   + IL QLYR+T +++ F +N VAL   +P    L  +L  ++  R +V
Sbjct: 309 SIVIEVKNGFVPEAILEQLYRFTPMETSFGINAVALVDGQPRTLGLRQMLDVYLEHRYDV 368

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ +    A DR H+L GL +A+ ++DEV+++IR S N    R E   R      ++
Sbjct: 369 VRRRSTFRRAMAADRLHLLEGLLLALVDIDEVIQLIRSSEN----RGEAKDR------LR 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            + D                LSE Q   IL L L RLT   R  + +E+  L   I+   
Sbjct: 419 SVFD----------------LSEPQAEYILNLTLGRLTRYDRIVVESEMEELRRTIEALD 462

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------LDMEDEDCIVREDMV 539
            IL   + L G++  EL  +     TPRRT ++E           +++ D+ C       
Sbjct: 463 AILGDETVLRGVVGDELAEMAATFGTPRRTILLESAGQTVTAATPVEVADDPCW------ 516

Query: 540 VTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
             +S  G + R     P+        GG+ +        D +      +    +   ++ 
Sbjct: 517 ALLSSTGLLARTSDDRPIGT-----DGGRAK-------HDVIVSAVRTTARGEIGVVTAG 564

Query: 596 GFVYKEKVWRLP-----IGSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G V +  V  LP      G+P  +G   ++ ++ L+  +R   +M F ED        + 
Sbjct: 565 GRVRRIGVLDLPALPATAGAPSLQGGVPVSEVVQLD--DRPLALMTFAEDVPG-----LA 617

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRF 708
             T+ G V+R K  D +  NR     + L   D ++ +V   T    +   T   Q + F
Sbjct: 618 LGTRQGVVKRVK-PDHLS-NRDEWDLIGLADGDAVVGAVPLVTGTEQLAFVTSDAQLLHF 675

Query: 709 PISAIR 714
              A+R
Sbjct: 676 GADAVR 681


>gi|28916596|gb|AAO59531.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/308 (59%), Positives = 244/308 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+ RA+PD+ D LKP HRRIL+ M  +G+  +K Y K ARI GEV+G YHPHG++A+YD+
Sbjct: 1   IVSRALPDVPDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD++ R +L++G GNFGSVDGD   A RYTE R+ K +  +L D+ KDT+D++ N
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAVAMRYTEARMSKISMEILRDITKDTIDYQDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H +GE++DG +AV +NPDI +  L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQVGEIIDGVLAVSENPDIPIPEL 180

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVN
Sbjct: 181 MEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ 
Sbjct: 241 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 300

Query: 337 FSVNMVAL 344
           F +N++AL
Sbjct: 301 FGINLLAL 308


>gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 733

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/592 (39%), Positives = 330/592 (55%), Gaps = 36/592 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           I +   E   I    + + +   YL YA++ I  RA+PD+RDG KPVHRRIL+ M QM +
Sbjct: 3   IHTPPPEGGRIVDEPMGEALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRL 62

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                  KCA++ GEVMG YHPHG+A+IYDAL R+AQD++ R  L++GQGNFG++DGD  
Sbjct: 63  NPQAAARKCAKVVGEVMGGYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNA 122

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTEC+L  A+  L++ + +D+VDFRP YD   +EP VL A +PN+L NG  GIAVG
Sbjct: 123 AAMRYTECKLTAASVLLMEGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSSGIAVG 182

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATG 244
           MAT+IP HN+GE++D C+A++D P+     L EI+ GPDFPTG V + G   I +AY TG
Sbjct: 183 MATSIPPHNVGELIDACLALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILDAYETG 242

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG + +R     E       QIV+TE+PYQV K+ ++E +AEL+ +K+   + D+RDES 
Sbjct: 243 RGGVRLRARWEREPLERGGYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDVRDES- 301

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFV 362
            +  RVVI+ K R   AD ++  L+R + L+  F +NM  L+    P    L   L+AF+
Sbjct: 302 AEDIRVVIDPKSRNIDADSLMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKACLQAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EV+ RR+ + + +   R H+L GL I   NLDEV+RI+R    P+     L+ R  
Sbjct: 362 DHRREVLNRRSAWRIERVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAV---LIAR-- 416

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q   IL+ RL +L  +    I NE  +L  
Sbjct: 417 ------------------------FGLSETQADFILDTRLRQLARIEEMTIENEYKALSE 452

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMV 539
           E+     + SS ++    I QEL + +  L +PRRT I E +     +  E  I RE + 
Sbjct: 453 ELASLQSLTSSPAKQWKKIGQELAATRKALISPRRTTIAEAVDASAFVPAEAFIPREAIT 512

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
           V +S  G+++ V   V        K    +      F TD  +V+     +F
Sbjct: 513 VILSERGWIRAVKGKVEDPSELKFKEGDALGFLVPAFTTDKLLVAASDGRVF 564


>gi|284803675|emb|CBJ21243.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/310 (59%), Positives = 246/310 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+ N+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFLNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVA 343
           Q+ F +N++A
Sbjct: 301 QTSFGINLLA 310


>gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
 gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
          Length = 737

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/549 (40%), Positives = 327/549 (59%), Gaps = 41/549 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +IDNP   ++ +M  I+GPDFPTG +I+ +T + N AY TGRGS  +
Sbjct: 182 PHNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  I+ +RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDEST-DIIRL 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + R     +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+ YLLNK + R  +L  L I   NLDE++ IIR    P+T    +M+R        
Sbjct: 361 ITRRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEPKTI---IMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +SE+Q   IL  RL  L  L    I +E ++L  +     
Sbjct: 410 ------------------FKISEIQVEVILNTRLRALQKLEEHAIIDEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
            IL +   L  I+K+E+ SV+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 KILKNHKELWKIVKKEIKSVQTQFGLNTIIGARRTSFEEVDLTNQVIDITAFITKEPITI 511

Query: 541 TVSHLGYVK 549
             S +G+++
Sbjct: 512 ICSKMGWIR 520


>gi|28916608|gb|AAO59537.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/305 (60%), Positives = 242/305 (79%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVD D  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDSDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           + +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV DNP+I    LME 
Sbjct: 122 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSDNPEITNQELMEY 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
             GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 182 SPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 241

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +
Sbjct: 242 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGI 301

Query: 340 NMVAL 344
           N++AL
Sbjct: 302 NLLAL 306


>gi|28916610|gb|AAO59538.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/308 (59%), Positives = 244/308 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+ RA+P++RD LKP HRRIL+ M  +G+  +K Y K ARI GEV+G YHPHG++A+YD+
Sbjct: 1   IVSRALPEVRDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD++ R +L++G GNFGSVDGD  AA RYTE  + K +  +L D+ KDT+D++ N
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EPVV+ +R+PN+LVNG  GIAVGMA NIP H LGE++DG +AV +NPDI +  L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMAPNIPPHQLGEIIDGVLAVSENPDITIPEL 180

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVN
Sbjct: 181 MEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ 
Sbjct: 241 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 300

Query: 337 FSVNMVAL 344
           F +N++AL
Sbjct: 301 FGINLLAL 308


>gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46]
 gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46]
          Length = 748

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 255/710 (35%), Positives = 375/710 (52%), Gaps = 57/710 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI +V +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+ M  + ++    + KC
Sbjct: 13  GIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAMRMLRLDPGTAHKKC 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  L++GQGNFG++DGD PAA+RYTECR
Sbjct: 73  ARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNPAAQRYTECR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LLD + +D VDFRPNYDG  +EPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 133 MTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQGIAVGMATSIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I +P      L   ++GPDFPTG V++     I  AY TGRG+  +R  
Sbjct: 193 AAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAEAYRTGRGAFRVRAR 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E       Q+VVTEIPY V KA ++EK+AEL+ EK++  +AD+RDES  +  R+V+E
Sbjct: 253 WTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADVRDES-AEDVRIVLE 311

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     V++  L+R T L+S FS+NM V ++G  P    L  +L+ ++  R  V+ R
Sbjct: 312 PRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEVLREWLDHRRTVLQR 371

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L +   R  +L GL I   +LD+V+RIIR    P+    ELM+            
Sbjct: 372 RSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEPKA---ELMRH----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E  +   +L
Sbjct: 418 ---------------FQLTEVQANAILDTRLRSLRKLEEMELKREQAALTAEKADLDALL 462

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMED----EDCIVREDMVVTVS 543
            S       I  ++ +VK     E    RR   +E   D  D    E  I RE + V VS
Sbjct: 463 DSEPLQWKSIAGQVRAVKKTFGPETALGRRRTTLENPPDTSDLDLAEAMIEREPITVIVS 522

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      S V  + +D +   F   T   +L  ++ G V+    
Sbjct: 523 QKGWI--------RALKGHVADLSTVQFKGDDALKLSFPTETTAKLLVLATNGKVFTLDA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +LP G  +  G  +  +  L++G  I T+ PF           ++F T  G        
Sbjct: 575 AKLPGG--RGFGDPIRLMADLDEGSDIVTVFPF------RAGAKLLFGTSDGRGFTTLAD 626

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
             +   R GK  + LD    +         + + +  +    V FP++ I
Sbjct: 627 GLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGENRLLVVFPLTEI 676


>gi|297243586|ref|ZP_06927517.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888337|gb|EFH27078.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 887

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 275/828 (33%), Positives = 443/828 (53%), Gaps = 98/828 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  +  Y+K A
Sbjct: 21  IVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ THNL
Sbjct: 140 APASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+   R  +H
Sbjct: 200 GEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGAFTTRSTTH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           IE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +DR  G R+VIE+
Sbjct: 260 IENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R  VV RR++
Sbjct: 320 KTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRRTVVRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +             LI + 
Sbjct: 380 FRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTK-------------LIKVF 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D             L E+Q + IL+LRL RLT + R ++  E + L  +I+E   ILSS 
Sbjct: 427 D-------------LDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQILSSE 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-----------VEGLLDMEDEDCIVREDMVVTVS 543
           ++L  ++  ++ +   + DTPRRT +           V   ++   ED  ++   V + +
Sbjct: 474 AKLDNVVIADMDTAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIK--AVQSAN 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKG-------------------RSGVVMRDEDFVTD----- 579
            +   +    +   A R+ G+                     SG++ R    V +     
Sbjct: 532 KITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNSH 591

Query: 580 -----------LFIVSTHTSVLFFSSLGFVYKEKVWRLPI-----GSPQ--ARGKALINI 621
                      +F  +T ++    +S G +    V  LP      G P   + G     +
Sbjct: 592 NNNVFNTPCKTMFETTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLSHGVKAQEL 651

Query: 622 LSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           L+  Q      GER+ + + F   ++S N   +   T++G V+R        ++    I 
Sbjct: 652 LTSTQSTDPVRGERVVSAIAF---DASQNATPLAIGTRNGVVKRWNFEAPTTMDSWSIID 708

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +K D  D +++       + ++  +     + F    +R   GR + G+ GI LA+G +V
Sbjct: 709 LKDD--DTVIAAAPAEDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAGIRLAEGAKV 765

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSLKNDSS 780
            + A+V     ++          SA   +   ++GD+E +   +N S+
Sbjct: 766 ATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPGTENGSA 813


>gi|332148486|dbj|BAK20092.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 304

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/303 (60%), Positives = 243/303 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I 
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 300

Query: 333 LQS 335
           LQ+
Sbjct: 301 LQT 303


>gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
 gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
          Length = 808

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/627 (38%), Positives = 353/627 (56%), Gaps = 58/627 (9%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+ISG+VMG YHPH
Sbjct: 26  YLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSAGGFRKSAKISGDVMGNYHPH 85

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ AIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+  AA  LLD L +
Sbjct: 86  GDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAAAEALLDGLNE 145

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D VDFR NYDG+  EPVVL A +PN+L NG  GIAVGMATNIP HN+ E+V  C+ +I  
Sbjct: 146 DAVDFRANYDGTLTEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNIDELVQACLHLIKT 205

Query: 209 PDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           PD   + L+  I GPDFPTG V++  R  I   Y TGRG+  +R   H E     + QI+
Sbjct: 206 PDARDETLLNYIPGPDFPTGGVLVEPRESIAETYRTGRGAFRLRCRWHTEDLGRGQWQII 265

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
           VTEIP+QV K+ ++EK+AE+++ K++  + D+RDES  +  R+V+E + +    DV++  
Sbjct: 266 VTEIPFQVQKSKLIEKLAEVIQTKKVPILGDVRDES-AEDIRIVLEPRSKNVDPDVLMGM 324

Query: 327 LYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           LYR + L++ FS+NM V ++G  P+  +L  +L+AF+  R EV++RR+++ + K   R  
Sbjct: 325 LYRSSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRREVLLRRSRHRMAKIDHRLE 384

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW------------NASDIKDLIDL 433
           VL GL +A  +LD V+ IIR+  +P+ A   LM   W            + +D    +  
Sbjct: 385 VLEGLIVAFLHLDRVIDIIRYDDDPKAA---LMYEDWGRPHQSTIARATSEADYVSPLAG 441

Query: 434 IDDSSYTIGSDGT------------------------MYLSEVQTRAILELRLARLTGLG 469
           +D +   + +D                            LS+VQ  AIL +RL  L  L 
Sbjct: 442 VDRAGLVLVADPAAGVPAVLGDEPVQAGVPRRYAGREQGLSDVQAEAILNMRLRSLRRLE 501

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG- 523
             ++  E + L  E  E  D+L + S     I ++L  V+ +         RRT   E  
Sbjct: 502 ELELVAERDRLMAERAELEDLLETGSLQWAKIAEQLREVRAQFGAKAPGGARRTTFAEAG 561

Query: 524 -LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
            + ++  E  I RE + +  S +G+++ +   +   +         +  +D D    +F 
Sbjct: 562 EVEEVPLEAMIEREPVTIVCSQMGWIRALTGHIDLNRE--------LKFKDGDGPRFIFH 613

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             T   +L F S G  Y      LP G
Sbjct: 614 AETTDRLLLFGSNGRFYTLSAANLPGG 640


>gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2]
 gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2]
          Length = 745

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 249/683 (36%), Positives = 378/683 (55%), Gaps = 57/683 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL  M Q+ ++  + + K A
Sbjct: 13  IEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLRLDPGQGFKKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+ ++YDAL R+AQD++ R  L++GQGNFG+VDGD  AA RYTE RL
Sbjct: 73  RVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD + +D VDFRP YDGS +EP VL A +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 133 TETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQGIAVGMATSIPPHNA 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E++D  + +ID+P+     L++ + GPDFPTG V++    G+  AYATGRGS  +R   
Sbjct: 193 AELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAEAYATGRGSFRVRARW 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+T      +VVTEIPY V K+ ++EKIAEL+ +K++  +AD+RDES  +  R+V+E 
Sbjct: 253 EKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADVRDESA-EDIRLVLEP 311

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           + R   A+V++  L++ T L++   +NM V + G  P+  +L   L+ ++  R +V++RR
Sbjct: 312 RARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEALREWLDHRRDVLLRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L +   R  VL G  IA  NLDEV+RIIR    P   ++ELM+             
Sbjct: 372 SRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEP---KQELMR------------- 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++VQT AIL +RL  L  L   +IR E ++L  E      +++
Sbjct: 416 -------------TFELTDVQTEAILNMRLRSLRRLEEMEIRKEHDALSKEQDGLNKLVA 462

Query: 493 SRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---EDCIVREDMVVTVSH 544
           S +     I +E+   +           RRT         ED   E  + RE + + VS 
Sbjct: 463 SEAAQWKSIAKEIRETRKTYGPETAIGRRRTTFAAPPTFHEDAFTEALVEREPVTIVVSA 522

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +   +  S +  + +D +   F   T + V+ F+S G  Y  +  
Sbjct: 523 KGWI--------RALKGHVQDLSNLQFKGDDSLGHAFFAETTSKVMVFASNGRFYTLEAA 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP G  +  G+ +  ++ L Q   I ++  +           ++ A+K G        D
Sbjct: 575 KLPGG--RGHGEPVRLMIDLEQEAEIVSVFAYQPGRK------LLLASKEGRGFVVGEDD 626

Query: 665 FIQINRSGKIAMKLDSRDEILSV 687
            +   R GK  +  D  D  L+V
Sbjct: 627 CLANTRKGKQVLVTDPPDAALAV 649


>gi|284803667|emb|CBJ21239.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 304

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/304 (60%), Positives = 241/304 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSV 339
            F +
Sbjct: 301 SFGI 304


>gi|284049791|emb|CBJ16554.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 303

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/303 (60%), Positives = 241/303 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME I
Sbjct: 121 EREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGIN 300

Query: 341 MVA 343
           ++A
Sbjct: 301 LLA 303


>gi|332148482|dbj|BAK20090.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/302 (60%), Positives = 241/302 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+  
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYHD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLR+ESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGIPDLREESDRNGMRIVIEIRRDANAHVILNHLYKQTALQT 300

Query: 336 LF 337
            F
Sbjct: 301 SF 302


>gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48]
 gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48]
          Length = 738

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 250/721 (34%), Positives = 389/721 (53%), Gaps = 62/721 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I S  + + +   YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  M +       K A
Sbjct: 13  ILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ GEVMG +HPHG+ +IYDAL RMAQ ++ R  +++GQGNFG++DGD  AA RYTEC++
Sbjct: 73  KVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDGDSAAAMRYTECKM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LLD + ++ VDFRP YDG  +EPVVL A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 133 TTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPHNV 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
            E++D C  +I  P+ D + LM II GPDFPTG + +  R  I  AY TGRGS+ +R   
Sbjct: 193 AELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRARY 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E       +I+V+EIPYQV K+ ++E++A+L+  K+   + D+RDESD +  R+++E 
Sbjct: 253 EVEDLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE-VRLILEP 311

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
           K R    +V++  L++ + L++ F+ NM  L+    P    L  IL +F+  R EV++R+
Sbjct: 312 KTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVLIRQ 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L+K   R HVL GL IA  NLDEV+RIIR     ET ++ LM R            
Sbjct: 372 SQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIR---EDETPKQTLMAR------------ 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ   IL+ RL +L  L    I+ E + L  E    L +L 
Sbjct: 417 --------------FELTEVQVDYILDTRLRQLARLEEMAIKGEHDKLSKERDGLLSLLG 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIVREDMVVTVSHLGYVK 549
           S  +    I ++L  V+ +L + RRT   E    +E    E  + +E + V +S  G++ 
Sbjct: 463 SEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAIESYLPKEALTVILSERGWI- 521

Query: 550 RVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                      R  KGR    S +  ++ D +  L        +L  +S G  +     +
Sbjct: 522 -----------RATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLLIMTSDGRFFTLGCDK 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G  +  G+ L  +L + +  RI  +  F    +      +V    +G V   +  D 
Sbjct: 571 LPSG--RGHGEPLQLMLEMEENTRIVNVFMF----TPGAKRLMVSKNGYGFVMNEE--DA 622

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +   ++GK  +  D  +  +++      + +++  +  + + +P+S +   A    V ++
Sbjct: 623 VGNKKAGKSVLNADGTEAFVALPVTG--DHVVILGENNKVLVYPVSELPEMARGKGVKLQ 680

Query: 726 G 726
           G
Sbjct: 681 G 681


>gi|160905674|gb|ABX52395.1| gyrase subunit alpha [Bacillus pumilus]
          Length = 306

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 242/306 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K + K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE RL K +  +L D+ KDT+D++ 
Sbjct: 61  AMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NP++    
Sbjct: 121 NYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQNPEMTTQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LM+II GPDFPT   I+GR+GI+ AY TGRGSI +R  S IE+TS  +++IV+ EIPYQV
Sbjct: 181 LMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLRAKSDIEETSSGKQRIVINEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+  V+LN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDATVHVLLNHLYKQTTLQT 300

Query: 336 LFSVNM 341
            F +N+
Sbjct: 301 SFGINL 306


>gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 754

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 263/750 (35%), Positives = 402/750 (53%), Gaps = 74/750 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV    V +IDNP  DLDALME ++GPD+PT A +I  +  +K  Y TGRGSI +R
Sbjct: 187 HNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H  K +GD   IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWH--KENGD---IVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F V  NM+ L+G +P+   L+ I+  ++ +R  
Sbjct: 302 VVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDG-RPQVKGLVSIISEWLEYRRI 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +P+    ELM R       
Sbjct: 361 TVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKA---ELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+ +Q  AILE++L +L  L    IR E + L  E +  
Sbjct: 411 -------------------FDLTAIQADAILEIKLRQLAKLEEIKIRGEQDELSKEKEHL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+ELL+  +     RR+ +VE      + + D I  E + V +S  
Sbjct: 452 EKLLGSERRLNTLIKKELLADAETYGDDRRSPMVERAEAKALTERDLIPSEPITVVLSEK 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     S +  +  D         ++   +F  S G  Y  
Sbjct: 512 GWI------------RHAKGHEVDPSTLSYKSGDSYLAHARGKSNQPAIFLGSDGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L+L  G  +  +M   EDE  W     + A+  G     K
Sbjct: 560 ESHSLP--SARSQGEPITGRLNLTPGSNMRQVM-MAEDEQLW-----LMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
            SD +  N+SGK  + L    ++++ +     + + IL  T  G+ + FPI  +      
Sbjct: 612 SSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEGRMLLFPIKDLPQLGKG 671

Query: 720 NSVGVRGISLAKG---DQVISMAIVLHADA 746
               +  I  A+    ++ +S   VLH  A
Sbjct: 672 KGNKIINIPAARSKSREEFLSYLQVLHDGA 701


>gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp.
           piscicida]
          Length = 754

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 263/750 (35%), Positives = 402/750 (53%), Gaps = 74/750 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV    V +IDNP  DLDALME ++GPD+PT A +I  +  +K  Y TGRGSI +R
Sbjct: 187 HNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H  K +GD   IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWH--KENGD---IVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F V  NM+ L+G +P+   L+ I+  ++ +R  
Sbjct: 302 VVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDG-RPQVKGLVSIISEWLEYRRI 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +P+    ELM R       
Sbjct: 361 TVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKA---ELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+ +Q  AILE++L +L  L    IR E + L  E +  
Sbjct: 411 -------------------FDLTAIQADAILEIKLRQLAKLEEIKIRGEQDELSKEKEHL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+ELL+  +     RR+ +VE      + + D I  E + V +S  
Sbjct: 452 EKLLGSERRLNTLIKKELLADAETYGDDRRSPMVERAEAKALTERDLIPSEPITVVLSEK 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     S +  +  D         ++   +F  S G  Y  
Sbjct: 512 GWI------------RHAKGHEVDPSTLSYKSGDSYLAHARGKSNQPAIFLGSDGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L+L  G  +  +M   EDE  W     + A+  G     K
Sbjct: 560 ESHSLP--SARSQGEPITGRLNLTPGSNMRQVM-MAEDEQLW-----LMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
            SD +  N+SGK  + L    ++++ +     + + IL  T  G+ + FPI  +      
Sbjct: 612 SSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEGRMLLFPIKDLPQLGKG 671

Query: 720 NSVGVRGISLAKG---DQVISMAIVLHADA 746
               +  I  A+    ++ +S   VLH  A
Sbjct: 672 KGNKIINIPAARSKSREEFLSYLQVLHDGA 701


>gi|261337210|ref|ZP_05965094.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
 gi|270277558|gb|EFA23412.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/519 (43%), Positives = 321/519 (61%), Gaps = 32/519 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  N+ Y+K A
Sbjct: 21  IVETPLNEEMSTSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMHLLPNRPYMKSA 80

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE RL
Sbjct: 81  RVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTEARL 139

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +  ++ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ THNL
Sbjct: 140 APAALGMNANIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMATHNL 199

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVV     V+ +PD  LD LME + GPD+P G +I+GR GI++AY  GRG++  R  +H
Sbjct: 200 GEVVAAAKYVMKHPDASLDTLMEYVPGPDWPGGGIIIGRDGIRDAYRDGRGTVTTRATTH 259

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E  +  ++ IVVTE+PY V    +LE+I+E V+  ++  I+   D +DR  G R+VIE+
Sbjct: 260 MENVTARKKAIVVTELPYMVGPERVLERISEGVKNHKLEGISGAIDLTDRHNGTRIVIEI 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G   D +L QL ++T LQ  F++N VAL   +P    L  +L  ++  R  V+ RR++
Sbjct: 320 KTGYDPDAVLVQLLKHTPLQENFTINNVALVDGRPHTLGLRAMLDVWIDHRRNVIRRRSE 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   KA +R H++ GL +A+ ++DEV+ +IR S + +TA+  LMQ          + DL 
Sbjct: 380 YRRAKALERLHLVDGLLMALIDIDEVIEVIRTSQDADTAKSRLMQ----------VFDLD 429

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D                +Q + IL+LRL RLT + R ++  E + L   I E   IL+S 
Sbjct: 430 D----------------IQAQYILDLRLRRLTKMSRIELETERDDLRRSIAELEGILASA 473

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             L  ++ +E+       +TPRRT     LLD  D+  +
Sbjct: 474 QALDEVVVREMDEAVAAYNTPRRTV----LLDTADDGTL 508


>gi|28916598|gb|AAO59532.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 305

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/305 (60%), Positives = 242/305 (79%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
             QD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 61  RGQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           + +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME 
Sbjct: 121 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 832

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 260/758 (34%), Positives = 406/758 (53%), Gaps = 96/758 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARISG 79
           + +  +  YL YA++VI  RAIPD+RDGLKPV RRILF M + + + ++ ++ K A++ G
Sbjct: 49  LAEHARRKYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKSAKVVG 108

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YDA+ RMAQ +++R+ L++GQGNFGS+DGD  AA RYTE +L K A
Sbjct: 109 DVIGKYHPHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAKLSKLA 168

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L+ ++ +DTV+FRP YDG+ +EP+VL AR+P +LVNG  GIAVGMAT+IP HNLGEV+
Sbjct: 169 AELITEIKRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHNLGEVI 228

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEK 258
             C+ +ID PD  +  +M  I+GPDFPTG  ++  R  ++ AY TG+G+  +RG    ++
Sbjct: 229 RACLLLIDEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGSWKYQE 288

Query: 259 TSGDRE---------QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
               ++         ++V+TEIP+ V K++++E+I +++  K++  +  ++D S  +  R
Sbjct: 289 GKETKQGRKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLST-EDIR 347

Query: 310 VVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAF 361
           V +EL   +  D  +++  L+++T LQ+   +++  L          P R  L  IL+ F
Sbjct: 348 VELELDPKSEVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSILRYF 407

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR + V RR +Y L K  +R H+L G  +   +LD+ +RIIR S     A ++L++  
Sbjct: 408 LDFRLQTVRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKLIK-- 465

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS++Q  A+LE RL +L  L    I  EL    
Sbjct: 466 ------------------------AFELSDIQADAVLETRLYKLAKLEILKIEEELADKR 501

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-------EDCIV 534
            + K    IL S+ +L G+++ EL ++  E    RRTRI     D ED       E  IV
Sbjct: 502 KQAKRIRAILKSKKKLWGVVRDELQALSGEYADRRRTRI-----DAEDLTEEFSAESFIV 556

Query: 535 REDMVVTVSHLGYVKR---VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            ED +V V+  G++KR   V L   R             MR+ D    L   ST   V+ 
Sbjct: 557 EEDAMVLVTRDGWIKRQRNVNLETTR-------------MREGDAPLALVGGSTRDCVVL 603

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER---ITTIMP----------FPE 638
           FS+ G  Y  +V  +P  S    G  +  +     GE+   +TT  P           PE
Sbjct: 604 FSNRGSAYVIRVNDVPASS--GHGTPVQKLFKFKDGEKVISVTTTDPRFMLEFAEAEKPE 661

Query: 639 DESSWNNLYVVF--ATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQEND 695
               + + Y  F   T+ G   R  L    + + RSG++  K  + DE + V     ++D
Sbjct: 662 LGEEFEDPYPHFLAVTRGGMALRFTLWPHREPSTRSGRLYGKTKAGDEFVEVFQVWGDDD 721

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +   T+ G+ +   +  + + AG      RG++L K D
Sbjct: 722 VCALTQKGKLLCCNVMDVNLLAGPG----RGVTLIKTD 755


>gi|332148488|dbj|BAK20093.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148496|dbj|BAK20097.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/301 (60%), Positives = 241/301 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 300

Query: 335 S 335
           +
Sbjct: 301 T 301


>gi|332148480|dbj|BAK20089.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148490|dbj|BAK20094.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/301 (60%), Positives = 240/301 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 300

Query: 335 S 335
           +
Sbjct: 301 T 301


>gi|28916624|gb|AAO59545.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/299 (61%), Positives = 238/299 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGINMLAL 299


>gi|28916590|gb|AAO59528.1| gyrase A [Bacillus subtilis]
          Length = 310

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/310 (58%), Positives = 244/310 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+P++RDGLKP HRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPEVRDGLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE  + K +  +L D+ KDT+D++
Sbjct: 61  DSMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             YDGS +EPVV+ +R+PN+L NG  GIA GMA NIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DXYDGSEREPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQ 300

Query: 335 SLFSVNMVAL 344
           + F +N++AL
Sbjct: 301 TSFGINLLAL 310


>gi|47607410|gb|AAT36612.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/299 (61%), Positives = 238/299 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLAL 299


>gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 749

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 262/737 (35%), Positives = 393/737 (53%), Gaps = 65/737 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    +L++ ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+   R   H E+ +     IVVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYATGRGAFRTRAKWHREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  RVVIE K R    ++++  L+R T L+S  S+N+ V + G  P+   L   
Sbjct: 298 RDES-AEDIRVVIEPKSRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ +   +   R  VL G  IA  N+DEV+RIIR    P+ A    
Sbjct: 357 LREWLDHLRDVLLRRSAHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                       LI                 L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 413 ------------LIK-------------AFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TP---RRTRIV---EGLLDMED 529
             L  E+K    +L S +R    + +++ +V+D     TP   RRT      E  L   +
Sbjct: 448 KDLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKRRTVFADAPEHDLAALE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G+V+ +   V        +  S +  + +D +   F   T + +
Sbjct: 508 ESLVEREPVTVVVSDKGWVRTLKGHV--------EDLSNLSFKTDDKLGFAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L Q   I ++               +
Sbjct: 560 LLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQDAAIVSLF------VHTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E  ++ T   +   ++ T   + V FP
Sbjct: 612 IASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNEAKAITTVAGDQVAVIGTN-HKMVVFP 670

Query: 710 ISAIRVFA-GRNSVGVR 725
           +  +   A GR   GVR
Sbjct: 671 LDQVPEMARGR---GVR 684


>gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 740

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 253/715 (35%), Positives = 389/715 (54%), Gaps = 75/715 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   S +D +   YL YA++ I  R++PD+RDGLKPVHRR+LF M Q+ ++  + + K A
Sbjct: 13  IDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFAMRQLKLDPGQGFKKSA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGK+HPHG+AAIYDA+ R+AQ++++R  L++GQGNFG++DGD  AA RYTE R+
Sbjct: 73  RVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGNIDGDNAAAMRYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD + +D+VDFRP YDG  +EPV+L A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 133 TEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGAQGIAVGMATSIPPHNV 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
            E+ D  + +I +P+  +D LM+ ++GPDFPTG +++     I++AYATGRG   +R   
Sbjct: 193 IELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIRDAYATGRGGFRVRARW 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G   QIVVTEIPYQV K+ ++E++AE++  K++  +AD+RDES  +  R+V+E 
Sbjct: 253 EIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLADIRDES-AEDLRIVLEP 311

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
           K R    ++++  L++ + L++   +N+  L+   +P    L G L A++A R+ V+ RR
Sbjct: 312 KSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGALNAWLAHRQVVLQRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L K   R  VL G  I   NLDEV+ IIR S +P  A                LI 
Sbjct: 372 AHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDA----------------LIA 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             D             L+E Q  AIL++RL  L  L    +R E ++L  E  +  ++L+
Sbjct: 416 RFD-------------LTETQANAILDMRLRSLRRLEEMALRTERDNLVAEQADLQNLLA 462

Query: 493 SRSRLLGIIKQELLSVKDELDTP--RRTRIVEGL-LDMEDEDCIV-REDMVVTVSHLGYV 548
           +       I  E+  +KD       RRT + +   +D +  + +V RE + +  S  G++
Sbjct: 463 NEDLQWKKIATEIKDMKDSFAKHDRRRTTLADAPEIDFDPTEILVEREPITIICSAKGWI 522

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +   +  S    ++ D    +    T   +L F+  G  Y     RLP 
Sbjct: 523 --------RAMKGHQELDSEFKFKEGDGPGLVLHAETTDKILLFADNGRFYTLAGDRLP- 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPED-------ESSWNNLYVVFATKHGNVRRNK 661
                RG+          GE ++ +   P D             + V  +T HG +    
Sbjct: 574 -----RGRGF--------GEPVSLLTDLPADIEIITLLRGVAGKMLVAASTGHGLI--VD 618

Query: 662 LSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLG-QCVRFPISAI 713
           +   I   RSGK  + L  D+R    +V  C  + D++ +  +  + + FPIS +
Sbjct: 619 MQSAIAQTRSGKQILNLPGDAR----AVACCMVDGDMVASVGVNRKLLAFPISEL 669


>gi|332148492|dbj|BAK20095.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 301

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/299 (61%), Positives = 239/299 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 299


>gi|302866556|ref|YP_003835193.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569415|gb|ADL45617.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 829

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 288/813 (35%), Positives = 414/813 (50%), Gaps = 78/813 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK ARI G
Sbjct: 27  PLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDRGHVKSARIVG 86

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA RYTE R+ + A
Sbjct: 87  DVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAARYTEARMSREA 145

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L  +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+  HNLGEVV
Sbjct: 146 MLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVV 205

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
                +I++PD  LD LME + GPD PTG ++LG   ++ AY TGRG + +RG   I   
Sbjct: 206 QAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVRMRGRVEIGPL 265

Query: 260 SGD--REQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
            G   R+ I VTE+PY V    ++  I  E+ + KR+  IAD++D +DR+ G R+V+E K
Sbjct: 266 EGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRENGTRLVVECK 325

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
            G +   +L  LYR T L+  F VN + L   +P    L  +L  F+A R EVV RR+ Y
Sbjct: 326 VGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKELLDVFLAHRYEVVTRRSSY 385

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              K  +R H++ GL IA+ ++D VV++IR S + + A+  LMQR               
Sbjct: 386 RKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQR--------------- 430

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q   IL+  L RLT   R ++  E   L  EI E   IL    
Sbjct: 431 -----------FKLSEIQATYILDTPLRRLTKYDRLELEAEQEKLRGEIAELSKILDDEK 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTV 542
            L  ++  EL +V  +   PRRT +V+             G L++ D+ C       V +
Sbjct: 480 VLRKVVSDELAAVVKQFGAPRRTTLVDGDLKEVLAASVPAGPLEVADDPC------QVIL 533

Query: 543 SHLGYV-KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           S  G V +    S   A+ R   GR        D V  +   +    VL  +S G  +K 
Sbjct: 534 SATGLVARTAAESEEAAEARRRSGRV-----KHDAVRAIVHSTARGRVLLVTSAGRAFKI 588

Query: 602 KVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP+   Q+       G +   ++ L  GE +  + P     S+  +  +   T+ G
Sbjct: 589 DVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGETVVGLAPL--GPSAQGSPGLALGTRAG 646

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIR 714
            V+       ++ +    I+++    DE++     T   + L   +     +RF  S +R
Sbjct: 647 VVKVCAPDWPVRSDEFEVISLR--DGDEVIGATWLTDGAETLAFVSSEASLLRFAASVVR 704

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G    G+ GI+L  G + +    +   D+ + E +             +G T ++T 
Sbjct: 705 P-QGLKGGGMAGINLPAGARAVFFGAIRTDDSKHGEPMVVTS---------TGATVKVTP 754

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            K   +        R Q   LK +  L+V+  G
Sbjct: 755 FKAYPAKGRATGGVRAQRF-LKGELELSVAWIG 786


>gi|46019112|emb|CAE52020.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/292 (61%), Positives = 236/292 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 122 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 182 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 241

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 242 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 293


>gi|145594226|ref|YP_001158523.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
 gi|145303563|gb|ABP54145.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
          Length = 827

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 273/762 (35%), Positives = 395/762 (51%), Gaps = 74/762 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK AR+ G
Sbjct: 25  PLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKSARVVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPH + AIYDAL R+AQD+SL   LI+G GNFGS D D PAA RYTE R+ + A
Sbjct: 85  DVMGKYHPHSDVAIYDALVRLAQDFSLNAPLIDGHGNFGSPD-DGPAAARYTEARMSREA 143

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L+ +LG++TVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+  HNLGEVV
Sbjct: 144 MLLVGELGEETVDLGPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVV 203

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG---VSHI 256
                +I++PD  LD LME + GPD PTG ++LG   ++ AY TGRG + +R    +  I
Sbjct: 204 SAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVRMRAKVEIGPI 263

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           E + G R+ I V E+PY +    ++  +  E+ + KR+  IAD++D +DR+ G R+VIE 
Sbjct: 264 EGSRG-RQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTRLVIEC 322

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F+A R EVV RR+ 
Sbjct: 323 KVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVFLAHRYEVVTRRSA 382

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +  +R H++ GL +A+ ++D+VV++IR S + + A+  LM+R              
Sbjct: 383 YRKRRREERLHLVDGLLVALLDIDQVVKLIRGSEDAQAAKDGLMRR-------------- 428

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q   IL+  L RLT   R ++  E   L  EI E   +L   
Sbjct: 429 ------------FGLSEIQATYILDTPLRRLTRYDRLELEAEQEKLRGEITELSRLLDDP 476

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVT 541
             L  ++  EL +V  +   PRRT +V+             G L++ D+ C       V 
Sbjct: 477 KVLRKVVSTELAAVVRQFAAPRRTTLVDGDLKEVLAASVPAGPLEVADDPC------QVI 530

Query: 542 VSHLGYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +S  G V R       A    RR G+ R        D V  +   +    VL  +S G  
Sbjct: 531 LSSTGLVARTAAESEEAVEGHRRHGRVR-------HDAVRAVAHSTARGKVLLVTSGGRA 583

Query: 599 YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +K  V  LP+   Q+       G +   ++ L  GE +  I P          L     T
Sbjct: 584 FKVDVLPLPVLPDQSGTVSLRGGMSAAELVPLAPGETVVGIAPLGAPAEGSPGL--ALGT 641

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPIS 711
           + G V+       ++ +    I+++    DE++     T   + L   T     +R+P+ 
Sbjct: 642 RQGMVKVCAPDWPVRADEFEVISLR--DGDEVVGTTWLTDGAESLAFVTSEASLLRYPVG 699

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            +R    R   GV G+SL    +V+    V   D  + E + 
Sbjct: 700 LVRPQGLRGG-GVAGVSLPGDARVVYFGAVRTDDPAHGEPMV 740


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/627 (37%), Positives = 347/627 (55%), Gaps = 49/627 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ + KCA
Sbjct: 16  IEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAKCA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEARM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 136 TDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPHNA 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I+N D  +  LM+ ++GPDFPTG +I+  R  I  AY TGRG   +R   
Sbjct: 196 AELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRSKW 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E        IVVTEIPY V KA ++EKIAEL+  +++  + D+RDES      V++  
Sbjct: 256 FQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDVRVVLVPK 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R     +++  L++ T L+S F +NM  L+ G  P   +L G+L+ ++  R +V+VRR+
Sbjct: 316 SRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLEHRRDVLVRRS 375

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L +   R  +L G  IA  N+DEV+RIIR    P    +++M   W+          
Sbjct: 376 KHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEP----KQVMMARWS---------- 421

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  AIL +RL  L  L   +IR E + L  E K+   +L+S
Sbjct: 422 ---------------LTDTQAEAILNMRLRALRKLEEFEIRKEFDGLSAEKKQIEALLAS 466

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL-LDMED--EDCIVREDMVVTVSHL 545
             +    IK E+ +++D+         RRT+  +    D+ D     I RE + V VS  
Sbjct: 467 NEKQWATIKWEVTNIRDKFGPETELGKRRTQFADAPEHDLTDIAHAMIEREPVTVVVSEK 526

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      S +  ++ D +   F   T   VL F++ G  Y     R
Sbjct: 527 GWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVLVFTTGGKFYTIGADR 578

Query: 606 LPIGSPQARGKALINILSLNQGERITT 632
           LP G  +  G+ +  I+ ++  + I T
Sbjct: 579 LPGG--RGHGEPIRIIVDMDNDQDIVT 603


>gi|40786593|gb|AAR89868.1| putative DNA gyrase/topoisomerase A subunit [Oryza sativa Japonica
           Group]
          Length = 418

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/335 (55%), Positives = 244/335 (72%), Gaps = 9/335 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCA
Sbjct: 82  VVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 141

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTECRL
Sbjct: 142 RVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRL 201

Query: 136 QKAAHFLLD-----DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
                F LD      +G+  VDF PN+D S +EP +L AR P++L+NG  GIAVGMATNI
Sbjct: 202 DVGCFFFLDIDAIFIIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 259

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V+
Sbjct: 260 PPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVM 319

Query: 251 RGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G 
Sbjct: 320 RGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGM 379

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           RVVIELKRGA   ++LN LYR+T+LQS FS NMVA
Sbjct: 380 RVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVA 414


>gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
          Length = 754

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/605 (39%), Positives = 343/605 (56%), Gaps = 50/605 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + + +   YL YA++ I  RA+PD+RDGLKPVHRRIL+ M QM +     Y K A
Sbjct: 18  IIEEPMGEALSRRYLAYALSTITARALPDIRDGLKPVHRRILYAMRQMRLGSGGSYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +++G+VMG YHPHG+ AIYDA+ R+ QD+S+R+ LI+GQGNFG++DGD  AA RYTECRL
Sbjct: 78  KVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFGNIDGDNAAAMRYTECRL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +AA  LL+ +  DTVDFR  YDG  +EPVVL A +P++L NG  GIAVGMATNIP HN+
Sbjct: 138 TEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANGSSGIAVGMATNIPPHNV 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVS 254
            E++D C+ +I  P+   + L+  ++GPD PTG V I  +  +  AYATGRG   IR   
Sbjct: 198 AELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDLAEAYATGRGGFRIRARW 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E     R QIVVTEIPYQV K+ ++E+IA+L++ K++  + D+RDES  +  R+V+E 
Sbjct: 258 ETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLTDVRDES-AEDIRLVLEP 316

Query: 315 KRGA-SADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVR 371
           K G+   + ++  +++ T L++  S+N+  +  +G  P  F L   L+AF+  R +V++R
Sbjct: 317 KAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADG-APGVFGLRDCLQAFLDHRRDVLLR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            T+Y L+K   R  +L G  IA  NLDEV+RIIR+  +P+    ELM             
Sbjct: 376 GTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKA---ELM------------- 419

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T  LSE+QT AIL +RL  L  L   +++ E   L  E K+   +L
Sbjct: 420 -------------ATFDLSEIQTEAILNMRLRSLRKLEEMELKREHKDLKAEQKDLQALL 466

Query: 492 SSR----SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED---CIVREDMVVTVSH 544
            S      R+ G +K+   S     D  RR   +      E+ D    I +E + V +S 
Sbjct: 467 KSEDIQWERIAGQLKETRKSFDPRSDLGRRRTALSDAPITEEVDLDELIEKEPVTVVISE 526

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        RA +   + ++ +  +D D    +    T   V+  S+ G  +   V 
Sbjct: 527 KGWV--------RALKGHVEDKASIKYKDGDQGRFVLPAMTTDKVILVSTNGRFFALDVK 578

Query: 605 RLPIG 609
            LP G
Sbjct: 579 DLPGG 583


>gi|28916616|gb|AAO59541.1| gyrase A [Bacillus subtilis]
          Length = 306

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/305 (58%), Positives = 242/305 (79%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+P++RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 2   RALPEVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++  YDG
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDTYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S ++PVV+ +R+PN+L NG  GIA GMA NIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 122 SERDPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIPELMEV 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 182 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 241

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+ F +
Sbjct: 242 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGI 301

Query: 340 NMVAL 344
           N++AL
Sbjct: 302 NLLAL 306


>gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
 gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
          Length = 752

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 259/740 (35%), Positives = 389/740 (52%), Gaps = 85/740 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAM 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P+  LD +++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ LNG +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFVTTDLEKSYRINLNMIGLNG-RPSVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E N L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMS 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S  G+V        
Sbjct: 459 NLLKKELQADSDAFGDDRRSPLHEREEAKAMNEHDMLPSEPVTIVLSQSGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFIDSTGRSYAID----PITLPS 562

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRRNKLSDFI 666
           ARG          QGE IT  +  P   +  + L       ++ A+  G       +D +
Sbjct: 563 ARG----------QGEPITGKLTLPPGATVDHMLMEGEEQKLLMASDAGYGFICTFNDLV 612

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSV 722
             NR+GK  + L     ++       +ND+LL  T  G+ + FP+S +   +   G   +
Sbjct: 613 ARNRAGKALISLPDNAHVMPPLVIENDNDMLLAITAAGRMLMFPVSDLPQLSKGKGNKII 672

Query: 723 GVRGISLAKGDQVISMAIVL 742
            +     AKG+  ++   +L
Sbjct: 673 SIPSAEAAKGEDGLAHLFIL 692


>gi|331001825|ref|ZP_08325347.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412799|gb|EGG92182.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 745

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/729 (33%), Positives = 406/729 (55%), Gaps = 34/729 (4%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  ++ + K ARI G+ 
Sbjct: 11  SEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELRIFSDRPHRKSARIVGDT 70

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAH 140
           MGKYHPHG+++IY+ L  ++QD+   + LI+G GNFGS++GD  AA RYTE +L K    
Sbjct: 71  MGKYHPHGDSSIYETLVVLSQDFKKGMALIDGHGNFGSIEGDGAAAMRYTEAKLAKFTEE 130

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             L DL K TVDF  NYD + +EP VL  R PN+L+NG  GIAVGM+T+IPTHNL EV +
Sbjct: 131 VYLKDLDK-TVDFISNYDETEKEPAVLPVRVPNLLINGAEGIAVGMSTSIPTHNLLEVCN 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--K 258
            C+A I N +ID   L+EI+ GPDFPTG +I  +  + + Y TG G + IRG   +E  +
Sbjct: 190 TCIAYIKNRNIDTKGLLEILHGPDFPTGGIIANKKDLFDIYDTGNGKLKIRGKIEVELGR 249

Query: 259 TSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
              D+++++++EIPY +  A +   L  +A LV  K++ D+ D+ ++SD+ G R+V+ELK
Sbjct: 250 KKSDKDKLIISEIPYTMIGAGINKFLVDVANLVESKKLSDVVDISNQSDKNGTRIVLELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A  + I N LY+ T L+  F VNM+A+   +PE  +L  ILK ++ F+ E+  ++   
Sbjct: 310 KDADIEKIKNILYKKTKLEDTFGVNMLAIVDGRPEILSLRDILKNYLDFQYEITTKKYNI 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNK  ++  +  GL  AV  +D ++ I+R S N   A++ L+       + K       
Sbjct: 370 LLNKELEKKEIQEGLIRAVDVIDIIIAILRGSKNLTQAKKCLISGDTTGINFK------- 422

Query: 436 DSSYTIGSDG-TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
               T   D   +  +E Q +AIL++RL +L GL  + +  +  +    I++  +IL   
Sbjct: 423 --VKTFEKDAKKLSFTEKQAQAILDMRLYKLIGLEIEALLKDNAATLKNIEDYENILKDH 480

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +  +  ++L  +K +    R+T I +    +  E+ +  E+++  +   GY K     
Sbjct: 481 KNMDKLFIKDLEKIKRDFALQRKTLIEDAKEAIYIEEPLASEEVIFVMDKFGYCK----- 535

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VY    RG   ++   +  E+    +F V     V  FS+ G +YK KV  LP+   + +
Sbjct: 536 VY---DRGTFDKNAQAVESENIY--VFPVMNTDKVCIFSNTGILYKIKVIDLPLSKLRDK 590

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+   +       ++   ED    N+  ++  TK G +++    +F + N     
Sbjct: 591 GTPIDNLTKFDSSTE-EILLAVSEDSMRGNS--ILMLTKKGFIKKVSCEEF-KTNNKQVA 646

Query: 675 AMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + KL + D +++V+  +     DI + +  G  +RF IS +  F  +++ G + ++L   
Sbjct: 647 STKLTNDDVLIAVKMISSGINTDIFIISDAGYILRFNISEVNEFK-KSTRGEKAMTLGYN 705

Query: 733 DQVISMAIV 741
           + +  + ++
Sbjct: 706 EYIKELYLL 714


>gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1]
 gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 744

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 241/648 (37%), Positives = 362/648 (55%), Gaps = 60/648 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  ++ D      I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MTKPAVTGD------IRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++ +  + KCAR+ G+V+GKYHPHG+ A+YD L R+AQD+++R  L+EGQGNFG++
Sbjct: 55  RQLKLDPSGGFKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L + A  L++ L +D+VDFRP YDG+ +EPVV+ + +PN+L NG  
Sbjct: 115 DGDNAAAMRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+GE+ D    +I  PD D+D L+  + GPDFPTG V++  +  I  
Sbjct: 175 GIAVGMATSIPPHNIGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G+  +R    +EK S    QIV+TEIPYQV KA ++EKIAEL+ EK++  +AD+
Sbjct: 235 AYRTGKGAFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADI 294

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL----NGY-KPERFT 353
           RDES  +  R+V+E + R   A++++ QL+R T L+S FS+NM  L    +G+  P    
Sbjct: 295 RDES-AEDIRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMN 353

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+AF+  R  V+ RR ++ L K   R  VL G     A+LD+V+RIIRF+  P+  
Sbjct: 354 LKEVLRAFLDHRMVVLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEPKA- 412

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
             EL++                          T  LSEVQ  AIL +RL  L  L   +I
Sbjct: 413 --ELIK--------------------------TFKLSEVQAEAILNMRLRSLNKLQELEI 444

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLD 526
           + E   L  E  +   +L+   R    I  +    +           RRT +      + 
Sbjct: 445 KTEHAELSAEKADLEALLADEPRRWAAIAAQNDETRKAFGGATALGKRRTELGDAPSAVV 504

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  E  + RE + + +S  G++        RA +        +  ++ D +  L    T 
Sbjct: 505 VPIEAYVEREAITMVLSEKGWI--------RALKGHSDAPEALKFKEGDQLGHLLKAWTT 556

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
             +L F++ G  Y     +LP G  +  G+ L  ++ L     I  +M
Sbjct: 557 DKILVFATDGRFYTIGGDKLPSG--RGHGEPLRLMIDLAGDVDIAAVM 602


>gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 752

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/677 (36%), Positives = 373/677 (55%), Gaps = 57/677 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   V++ + ++  YL YA++ I GRA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 16  GTDLVNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKC 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYTE R
Sbjct: 76  AKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEAR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL+ + +D +DFR NY G  +EP+VL A  PN+L NG  GIAVGMAT+IP HN
Sbjct: 136 MTEIARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
           L E+ D  + +I + D   D L+  +RGPDFPTG +++     I   Y TGRG+  +R  
Sbjct: 196 LSELCDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRAR 255

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+ +     IVVTEIPY V K+ ++EK+AEL+ +K++  + D+RDES  +  R+VIE
Sbjct: 256 WEREEGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDES-AEDVRIVIE 314

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            K R    ++++  L++ T L++ F VNM V ++G  P   +L   L+ ++  R EV++R
Sbjct: 315 PKSRAVEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLR 374

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L +   R  VL G+ I   NLDEV+RIIR    P    +E+++            
Sbjct: 375 RSRHRLAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEP----KEVLK------------ 418

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T  LS++Q   IL+ RL  L  L   ++R E  +L  E  E   +L
Sbjct: 419 -------------ATFTLSDIQANYILDTRLRSLRRLEEMELRREYENLEKEKSEIEGLL 465

Query: 492 SSRSRLLGIIKQELLSVKDELD--TP--RRTRIVEGLLDMEDEDC----IVREDMVVTVS 543
           +S S+    I  ++  +K      TP  RR      + D+   D     I RE + + VS
Sbjct: 466 ASESKQWKEISSQIRDLKKRYGEATPLGRRRTTFGNVPDVGAVDVATALIEREPVTIVVS 525

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      S +  + +D +   F   T + +L F+S G V+  + 
Sbjct: 526 EKGWI--------RALKGHVADLSTLTFKGDDQLAFQFFAETTSKILLFASDGKVFTLEA 577

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +LP G  +  G+ L  ++ L +GE +T+I+P+     +   L +  +   G +      
Sbjct: 578 SKLPGG--RGHGEPLRLMVDLGEGEEVTSIIPY----ETGAKLLLTASDGRGFIVGQ--D 629

Query: 664 DFIQINRSGKIAMKLDS 680
           D I   R GK  +  D+
Sbjct: 630 DLIGTTRKGKQVLNCDA 646


>gi|46019128|emb|CAE52028.1| gyrase subunit A [Bacillus subtilis]
 gi|46019130|emb|CAE52029.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/292 (61%), Positives = 236/292 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYK 292


>gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 737

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/678 (36%), Positives = 367/678 (54%), Gaps = 60/678 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           I +   E   I    + D +   YL YA++ I  RA+PD+RDG KPVHRRI++ M QM +
Sbjct: 3   IHTPTPEGGRIVEEPMGDALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAMHQMRL 62

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                  KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  L++GQGNFG++DGD  
Sbjct: 63  NPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSA 122

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTEC+L  AA  LLD + +D VDFRP YD   +EPVVL A +PN+L NG  GIAVG
Sbjct: 123 AAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSSGIAVG 182

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATG 244
           MAT+IP HN+GE++D C  +++ PD   + L++I+ GPDFPTG V + G   + +AY TG
Sbjct: 183 MATSIPPHNVGELIDACQLLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLDAYETG 242

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG + +R     E       +IVVTEIPYQV K+ ++E++A+L+  K+   +AD+RDES 
Sbjct: 243 RGGVRLRAAWDTEDLGRGVWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADVRDES- 301

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFV 362
            +  R+++E K R    +V++  L++ + L++ F +NM  L+    P    L   L+AF+
Sbjct: 302 AEDIRLILEPKSRTVEPEVLMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCLRAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R  V+ RR+++ + +   R H+L GL I   NLDEV+RI+R    P+ A         
Sbjct: 362 DHRRVVLNRRSQWRIARVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAA--------- 412

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  LI              T  LSE+Q   IL+ RL +L  L    I  E   L  
Sbjct: 413 -------LI-------------ATFGLSELQADFILDTRLRQLARLEEMTIEKEFKELSE 452

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMV 539
           E+     + SS ++    I +EL +V+  L +PRRT I   V+    +  E  I RE + 
Sbjct: 453 ELAALQALTSSETKQWKAIGKELEAVRKALVSPRRTVIGDAVDASAFVAPEAFIPREAIT 512

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           V +S  G++            R  KG+    S +  ++ D +  L    T   +L  +S 
Sbjct: 513 VILSDRGWI------------RAAKGKVDDPSELKFKEGDKLGFLVPAYTTDKLLVGASD 560

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G ++     +L  G  +  G+ L  ++ L++   I  ++    D        ++ A+K G
Sbjct: 561 GRIFTIGADKLASG--RGHGEPLRLMIDLDEKAEIINVVAHEPDAK------LLIASKAG 612

Query: 656 NVRRNKLSDFIQINRSGK 673
                  +D +   R GK
Sbjct: 613 YGFVAPENDLLAQKRGGK 630


>gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
 gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
          Length = 756

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 264/749 (35%), Positives = 407/749 (54%), Gaps = 80/749 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I++   E++      ++T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKKIMNEVAEQK------ALTEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 55  SELGLKATAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSP 114

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG
Sbjct: 115 D-DPKSFAAMRYTEARLSAYADVLLAELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNG 173

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMA++I  HNL EV + CV ++DNP  DL A+M+ I+GPDFPT A +I     I
Sbjct: 174 ATGIAVGMASDILPHNLTEVANACVHLLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAI 233

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATG GSI +R + + EK     + IV+T +PYQV+ A ++E+IA  +++K++  + 
Sbjct: 234 TTLYATGHGSIKMRAIYNPEK-----QNIVITALPYQVSGAKVMEQIALQMQQKKLPMVE 288

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFT 353
           DLRDESD +    ++ + R    DV  +++ L+  T L+  + V  NM+ L+G KP    
Sbjct: 289 DLRDESDHEHPTRLVIIPRSNRVDVDGLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKN 347

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           LI IL  ++ +R  VV RR +Y L K  +R HVL GL IA  N+DEV+ IIR   +P   
Sbjct: 348 LITILSEWLIYRVSVVKRRLEYRLAKVLERIHVLEGLLIAYLNIDEVIAIIREHEHP--- 404

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           ++ L+ R                            LSE Q  AILE++L  L  L    I
Sbjct: 405 KQGLIAR--------------------------FNLSERQAEAILEMKLRHLAKLEEIKI 438

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R EL+ L IE      IL+S  +L  ++K E++  +D     RR+ I+  +    +++ED
Sbjct: 439 RGELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDAFGDVRRSPIIVRQESQALKEED 498

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E + V +S  G+V        RA +      S +  +  D         ++  ++F
Sbjct: 499 ILPNEPITVVLSKNGWV--------RAAKGHDINGSELSYKAGDEFKAQATARSNQQIVF 550

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G VY      LP  S + +G+ L   L+  +G    T++    ++       V+ A
Sbjct: 551 FDSEGKVYSLPGHSLP--SARGQGEPLTGKLNPAEGILFETVVGGEAEQ------LVLLA 602

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFP 709
           +  G     K+SD    NR+GK  +KL +   IL       + ++L+   T +G+ + F 
Sbjct: 603 SDAGYGFVAKMSDLYVKNRNGKACVKLPAASRILPPRILPNQEELLVACATSVGRLLIFS 662

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           I  +             +S  KG+++IS+
Sbjct: 663 IKEL-----------PELSRGKGNKLISI 680


>gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 752

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/743 (34%), Positives = 396/743 (53%), Gaps = 77/743 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ + M+N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  
Sbjct: 8   LALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL 
Sbjct: 68  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL 
Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V  
Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + 
Sbjct: 247 KEDGA-----VVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVP 301

Query: 316 RGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           R    D+  ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V R
Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                      R  KG      G+  +  D         ++  V+F  + G  Y      
Sbjct: 511 -----------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID--- 556

Query: 606 LPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            PI  P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +
Sbjct: 557 -PITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFN 609

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GR 719
           D +  NR+GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G 
Sbjct: 610 DLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGN 669

Query: 720 NSVGVRGISLAKGDQVISMAIVL 742
             + +     AKGD  ++   VL
Sbjct: 670 KIINIPSAEAAKGDDGLAHLYVL 692


>gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/685 (35%), Positives = 373/685 (54%), Gaps = 58/685 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + D +   YL YA++ I+ R++PD+RDG+KPVHRR++F M Q+ ++    + KCA
Sbjct: 10  VENTKLVDALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTSGFKKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGSVDGD  AA RYTE RL
Sbjct: 70  RVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ +  D+VDFRP YDG   EPVVL A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 130 TEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHNV 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           GE+    + +I +PD+ +  L+E++ GPDFPTG +I+  R  I  AY TGRGS  IR   
Sbjct: 190 GEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSFRIRARW 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+      QIVVTEIPYQV K+ ++E++A+L+ +K++  + D+RDES     R+V+E 
Sbjct: 250 EVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESS-ADIRLVLEP 308

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K RG   +V++  ++R T L+S F +NM  L   + P   +L  +L+A++  R +V+VRR
Sbjct: 309 KSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLVRR 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+    R  +L G      NLDEV+RIIR     + AR  LM              
Sbjct: 369 TRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIR---EEDDARASLM-------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  ++L +RL  L  L   +IR E  +L  E    L ++ 
Sbjct: 412 ------------AAFDLSELQAESVLNMRLRSLRRLEETEIRKEHAALTEERAGLLALME 459

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
             S     I  E+  ++ +        RR+ +      +D+     + RE + V +S  G
Sbjct: 460 KESLRWKHITSEIKGIQKKFGGGTLGARRSTLAAPPAEVDISAALPVEREPLSVILSQKG 519

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++ V        R  G        ++ D +  +    +   +  F++ G  +  +   L
Sbjct: 520 WIRTV--------RGHGVDPEAQKFKEGDGLRLIVECQSSDRLCCFATDGRAFTLRAADL 571

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L+  E I TI P  +D         + A+  G     +  D +
Sbjct: 572 PRG--RGDGQPLRLMIELSNEEDIITIFPVTQDARR------LLASSAGRGMIVREEDMV 623

Query: 667 QINRSGKIAMKLDSRDEILSVETCT 691
              R+GK  + L   +   S + C 
Sbjct: 624 AEKRTGKQVLNLKEGE---SAQVCA 645


>gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004]
          Length = 751

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 260/749 (34%), Positives = 399/749 (53%), Gaps = 79/749 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EVV   VA++DNP+  LD +ME I+GPD+PT A +I  +  I+  Y  GRGS+ +R
Sbjct: 187 HNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDIRKIYKNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E+++     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + +    DV  ++N L+  T L+  + V  NM+ L+  +P    L+ IL  ++ FR E
Sbjct: 302 VIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDN-RPNVKGLVEILSEWLVFRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R  Y L K   R H+L GL  A  ++DEV++IIR    P+     LMQR       
Sbjct: 361 TVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FELTETQAEAILELKLRHLAKLEEVKIRGEQDGLAKERDKL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             IL S  +L  ++K+E+++  +     RR+ + E      M D D +  E + V +S +
Sbjct: 452 QAILGSERKLSTLLKKEIIADAENYGDHRRSPLKERSEAKAMSDHDILPSEPITVVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++  V+F  + G  Y  
Sbjct: 512 GWV------------RSAKGHEIDPAGLNYKSGDSFRSAARGKSNQPVVFIDTTGRSYSV 559

Query: 602 KVWRLPIGSPQARGKALI---NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
                P+  P ARG+       +L+L  G  I  ++   E++        + A+  G   
Sbjct: 560 D----PLDLPSARGQGEPLTGKLLALPAGASIEHLLIAKEEQK------FLMASDAGYGF 609

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLT-TKLGQCVRFPISAIRVF 716
               SD I  NR+GK  + L    +++  +E   +++D+LL  TK G+ + FP++ +   
Sbjct: 610 ICTFSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLLAITKEGRMLMFPVADLPQL 669

Query: 717 A---GRNSVGVRGISLAKGDQVISMAIVL 742
           +   G   V +     A G+ ++S  +VL
Sbjct: 670 SKGKGNKIVSIPAAQAASGEDMLSWLLVL 698


>gi|255030550|ref|ZP_05302501.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 323

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 241/318 (75%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQL 327
           +VIE++R  SA VI+N  
Sbjct: 303 IVIEVRRDISASVIVNNF 320


>gi|47094547|ref|ZP_00232209.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017079|gb|EAL07950.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 440

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/458 (44%), Positives = 296/458 (64%), Gaps = 28/458 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + K A+  G V+G 
Sbjct: 1   MGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE RL   +  LL 
Sbjct: 61  YHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP HNL E+++  + 
Sbjct: 121 DIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIK 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R  + IE   G R+
Sbjct: 181 RLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +ELK+ A+A+ +L
Sbjct: 241 QITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R 
Sbjct: 301 NYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQ 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL  A++ LDEV+++IR S +   A+  L                           
Sbjct: 361 HILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------------------- 394

Query: 445 GTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            T Y  SE Q  AI+ L+L RLT     ++++E  SL 
Sbjct: 395 -TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLA 431


>gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 752

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/736 (34%), Positives = 392/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  YLL 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYLLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
 gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
          Length = 747

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 270/752 (35%), Positives = 397/752 (52%), Gaps = 86/752 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR 
Sbjct: 10  TISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLRNTAKYKKSART 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE RL
Sbjct: 70  VGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAAMRYTESRL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL++LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+IP HNL
Sbjct: 129 HKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            E+   CV +ID PD  +  LM  +RGPDFPTGA +I  +  I+  Y  GRG++ +R   
Sbjct: 189 KELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYEGGRGTLRLRSKY 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313
             E T      IV+TE+P+QV+ + +LE+IA+ ++ K++  +ADLRDESD +   R+VIE
Sbjct: 249 IQEGTD-----IVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDESDHENPTRLVIE 303

Query: 314 LKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +      D ++N L+  T L+    V  NM+ ++G KP+   L  IL  ++ FR E V 
Sbjct: 304 PRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDG-KPQVKPLNHILSEWLEFRTETVR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R          
Sbjct: 363 RRLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKP---KEELMAR---------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+VQ  AILE++L +L  L    IR E + L  E  +   I
Sbjct: 410 ----------------FGLSDVQAEAILEIKLRQLAKLEEIKIRGEQDELSKERDQLEKI 453

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S++R+  +IK+E+L+  +     RRT +V         + + +  E + V +S  G++
Sbjct: 454 LGSKARMRTLIKKEILADAETYGDDRRTLLVSRAEASAFSETEILPSEAVTVVLSERGWI 513

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                       R GKG      G+  +  D         ++ + +   S G  Y  +  
Sbjct: 514 ------------RSGKGHELEPEGLNYKSGDSFAFAARGKSNQATVLLDSTGRSYSLQTH 561

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVR 658
            L    P ARG          QGE ITT +  P   +    L        +  +  G   
Sbjct: 562 TL----PSARG----------QGEPITTRLNPPPGAAMKGLLLGNPDDQYLLTSDAGYGF 607

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT-TKLGQCVRFPISAIRVF 716
             KLSD +  N++GK  + L    E++  +   Q   D L   +  G+ + FP+  +   
Sbjct: 608 IGKLSDMVSKNKAGKALLSLPKGAEVMPPQPVKQLSTDYLAAISNEGRLLVFPVRDLPEL 667

Query: 717 A---GRNSVGVRGISLAKGDQVISMAIVLHAD 745
           A   G   + +     A  ++++  A+VL AD
Sbjct: 668 AKGKGNKIINIPSSRAAAREELMVGAVVLGAD 699


>gi|28916622|gb|AAO59544.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/305 (59%), Positives = 241/305 (79%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 2   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 62  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           + +EPVV+ +R+PN+LVNG  GIAVGMATNI  H LGEV++G +A  +NP+I    LME 
Sbjct: 122 AEREPVVMPSRFPNLLVNGAAGIAVGMATNILPHQLGEVIEGVLAESENPEITNQELMEY 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 182 IPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 241

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +
Sbjct: 242 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGI 301

Query: 340 NMVAL 344
           N++AL
Sbjct: 302 NLLAL 306


>gi|159037301|ref|YP_001536554.1| DNA topoisomerase IV subunit A [Salinispora arenicola CNS-205]
 gi|157916136|gb|ABV97563.1| DNA topoisomerase (ATP-hydrolyzing) [Salinispora arenicola CNS-205]
          Length = 827

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 276/762 (36%), Positives = 397/762 (52%), Gaps = 76/762 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK AR+ G+
Sbjct: 26  LVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGHRPDRGHVKSARVVGD 85

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPH + AIYDAL R+AQD+SL   LI+G GNFGS D D PAA RYTE R+ + A 
Sbjct: 86  VMGKYHPHSDVAIYDALVRLAQDFSLNTPLIDGHGNFGSPD-DGPAAARYTEARMSREAM 144

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+ +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+  HNLGEVV 
Sbjct: 145 LLVGELGEDTVDLEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATNMIPHNLGEVVT 204

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG---VSHIE 257
               +I++PD  LD LME + GPD PTG ++LG   ++ AY TGRG + +R    +  IE
Sbjct: 205 AARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVRMRAKVEIGPIE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
            + G R+ I V E+PY +    ++  +  E+ + KR+  IAD++D +DR+ G R+VIE K
Sbjct: 265 GSRG-RQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDLTDRENGTRLVIECK 323

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
            G +   +L  LYR T L+  F VN + L   +P    L  +L+ F+A R EVV RR+ Y
Sbjct: 324 VGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVFLAHRYEVVTRRSAY 383

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              +  +R H++ GL +A+ ++D+VVR+IR S + + A+  LM+R               
Sbjct: 384 RRRRREERLHLVDGLLVALLDIDQVVRLIRGSEDAQAAKEGLMRR--------------- 428

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ   IL+  L RLT   R ++  E   L  EI E   +L  R 
Sbjct: 429 -----------FGLSEVQATYILDTPLRRLTRYDRLELEAEQEKLRSEIAELSRLLDDRK 477

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTV 542
            L  ++  EL +V  +   PRRT +V+             G L++ D+ C       V +
Sbjct: 478 VLRKVVSNELAAVVKQSAAPRRTTLVDGDLKEVLAASVPSGPLEVADDPC------QVIL 531

Query: 543 SHLGYVKRV---PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           S  G V R            RR G+ R        D V  +   +    VL  +S G  +
Sbjct: 532 SSTGLVARTAAESEEAAEGSRRHGRVR-------HDAVRAVAHSTARGRVLLVTSGGRAF 584

Query: 600 KEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFAT 652
           K  V  LP+   Q+       G ++  ++ L  GE +  I P  P  E S     +   T
Sbjct: 585 KVDVLPLPVLPEQSGTVSLRGGMSVAELVPLAPGETVVGIAPLGPSAEGSPG---LALGT 641

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPIS 711
           + G V+       ++ +    I+++    DE++     T   + L   T     +R+   
Sbjct: 642 RRGMVKVCAPEWPVRADEFEVISLR--DGDEVVGATWLTDGAESLTFVTSEASLLRYSTG 699

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            +R    R   GV G+ L+   +V+    V   D  + E + 
Sbjct: 700 LVRPQGLRGG-GVAGVGLSGDARVVFFGAVRTDDPTHGEPMV 740


>gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
 gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 252/714 (35%), Positives = 392/714 (54%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD++PN+DG+ +EP  L +R P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNGVTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV +  VA+ID+P +DLD L+E ++GPD+PT A +I  +  +K  Y  GRGSI +R
Sbjct: 187 HNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVELKKLYRDGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H  K +GD   IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 ARWH--KDNGD---IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  + V  NM+ L+G +P+   L+ IL  ++ FR E
Sbjct: 302 VIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDG-RPQVKGLLKILTEWLEFRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL +A  N+DEV+ IIR    P   ++ELM R       
Sbjct: 361 TVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEP---KKELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AILE++L +L  L    IR E + L  E ++ 
Sbjct: 411 -------------------FGLSEKQAEAILEIKLRQLAKLEEIKIRGEQDELNKEREQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  R+  ++K+E+L+  ++    RR+ +VE      M + D I  E + V +S  
Sbjct: 452 EKVLGSERRMNTLLKKEILADAEKYGDERRSPLVERAEAKAMTERDLIPSEPITVVLSEK 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G++            R  KG             D ++ S    ++  V+F  S G  Y  
Sbjct: 512 GWI------------RHAKGHDVDPTSLSYKSGDSYLASARGKSNQPVVFIGSDGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L++  G  +  +M         N+  V+ A+  G     K
Sbjct: 560 ESHTLP--SARSQGEPITGRLNITAGTAVRHVM------MGENDNLVLMASDAGYGFVCK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
             D +  NRSGK  + L    E++  +     + +DI+  T  G+ + FP+  +
Sbjct: 612 QDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVAITNEGRMLVFPVKEL 665


>gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB80_02D08]
          Length = 752

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/735 (33%), Positives = 406/735 (55%), Gaps = 70/735 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++ I S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   K
Sbjct: 2   KEQEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSK 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG+ A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA 
Sbjct: 62  YKKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAM 120

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A+ L+ +L   TVD++PN+DGS  EPV+  ++ P++L+NG  GIAVGMAT
Sbjct: 121 RYTESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMAT 180

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP+HN+ EV+D  V +++NP  +L  L++I++GPDF   + +I+    ++  Y+TGRG 
Sbjct: 181 DIPSHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGG 240

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              +          D+ QI++  +PYQ + + +LE+IA+ + +K+I  + DL DE D ++
Sbjct: 241 FKAQAFWQ-----QDKNQIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKE 295

Query: 307 GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVA 363
             R+VI LK    +A+ ++N L+  T LQ  + VNM  ++L G  P+ F+LI +LK ++ 
Sbjct: 296 PVRLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKG-GPKVFSLIDLLKEWLV 354

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+            
Sbjct: 355 FRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPK------------ 402

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               KD+I                 LS++Q  AILE+RL +L  L +  +  E ++L  E
Sbjct: 403 ----KDIIK-------------AFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLLAE 445

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVT 541
             +   ILSS++RL  +IK ELL +K+     R++ I E  G     +E+ +V E + V 
Sbjct: 446 QTDIEKILSSKTRLKTLIKNELLEIKEVFGEERKSPIKELSGAKVFSEEETLVTEPVTVV 505

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +S  G++            R  KG     S +  R ED + D     ++   +F  S G 
Sbjct: 506 LSAAGWI------------RSAKGHDIDPSSLSYRGEDTLQDFRRGKSNQVSVFLDSNGK 553

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP  S +  G  +   +S + G +  + +   +D+       ++    +G +
Sbjct: 554 AYSLPTHSLP--SARGMGDPISGRVSADSGVKFISTLIGNDDD----KFMIMNTAGYGYI 607

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             ++  + I   +SGK  MK+    E+L +++       I   + +G+ + F I  + V 
Sbjct: 608 --SEFKNMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIGRLLIFNIDELPVL 665

Query: 717 AGRNSVGVRGISLAK 731
                  +  I  AK
Sbjct: 666 GKGKGNKIINIPTAK 680


>gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 756

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 261/771 (33%), Positives = 407/771 (52%), Gaps = 93/771 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HN+ EV    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRMRAV--WKKEDGD---VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  + V  NM+ L+G +P    L+ IL  ++
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDG-RPSVKGLVEILSEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P    + ++ R +
Sbjct: 356 VFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP----KPVLMRQF 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +                         LSE Q  AILEL+L  L  L    IR E   L  
Sbjct: 412 S-------------------------LSETQAEAILELKLRHLAKLEEMKIRGEQGDLAK 446

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  +   +L+S  +L  +IK+E+ S        RR+ + E      M + D +  E + +
Sbjct: 447 ERDQLQALLASERKLSNLIKKEIQSDAQAYGDDRRSPLHERGEAKAMSEHDFVPSEPVTI 506

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D         ++  V+F  S G
Sbjct: 507 VLSEMGWV------------RSAKGHDIDPTGLSYKAGDSFRAAAKGKSNQPVVFIDSTG 554

Query: 597 FVYKEKVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             Y       PI  P ARG+   L   L+   G  I  ++   +D+       ++ A+  
Sbjct: 555 RSYALD----PISMPSARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDA 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G       +D +  NR+GK  + L D+   +  +E   ++N ++  T  G+ + FP+S +
Sbjct: 605 GYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAITAAGRMLLFPVSDL 664

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE---RICYMKHMSAQ 761
                        +S  KG++++S+     + AD+ E   R+ ++  +  Q
Sbjct: 665 -----------PQLSKGKGNKIVSI-----SSADFSEGKDRLTWLYLLPPQ 699


>gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 749

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/684 (35%), Positives = 387/684 (56%), Gaps = 71/684 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ITS+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY K A
Sbjct: 5   ITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GK+HPHG+ A Y+A+  MAQ++S +   ++GQGN+GS D DP   AA RYTE 
Sbjct: 65  RTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQD-DPKSFAAMRYTES 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K A+ L+ +L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+IP+H
Sbjct: 124 KLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDIPSH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           N+ E++D  V +IDNP   L  L++II GPDF   + +I  +  +   Y+TG+G     G
Sbjct: 184 NINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKG-----G 238

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311
                + + D+ QI++  +PYQ + + +LE+IA+ + +K+I  + DL DE D ++  R+V
Sbjct: 239 FKAQAQWAQDKNQIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPVRLV 298

Query: 312 IELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEV 368
           I LK    +A+ ++N L+  T LQ  + VNM  ++L G  P+ F+L+ +LK ++ FR+E 
Sbjct: 299 ITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKG-GPKVFSLVDLLKEWLVFRKET 357

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+                K
Sbjct: 358 VIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPK----------------K 401

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D+I                 LS++Q  AILE+RL +L  L +  +  E ++L  E  +  
Sbjct: 402 DIIT-------------AFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLVAEQTDIE 448

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLG 546
            ILSS++RL  +IK EL+ +KDE    R + I E        +E+ +V E + V +S  G
Sbjct: 449 KILSSKTRLKTLIKNELIEIKDEFGEVRXSPIREATEAKVFSEEETLVTEPITVVLSAAG 508

Query: 547 YVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++            R  KG     S +  R ED + D     ++   +F  S G  Y   
Sbjct: 509 WI------------RSAKGHEIDPSSLSYRGEDVLQDYGRGKSNQVSVFLDSNGKAYSLA 556

Query: 603 VWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              LP  S +  G  +   +S + G + I++++   ED+       ++    +G +  ++
Sbjct: 557 SHSLP--SARGMGDPITGRVSADSGVKFISSLIGNDEDK-----FMIMNTAGYGYI--SE 607

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL 685
             + +   +SGK  MK+    ++L
Sbjct: 608 FKNMVSNKKSGKAFMKIPHEADLL 631


>gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
 gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
          Length = 748

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 250/696 (35%), Positives = 392/696 (56%), Gaps = 76/696 (10%)

Query: 4   HIISSDEEEEKGITSVS--ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++I+ + E++ G +++S  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 3   NLINKNNEDDGGGSTLSEPLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMY 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++ +  N K++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+S+R  +++GQGNFG++D
Sbjct: 63  RLKLVSNGKFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFGNID 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE R+   A  +L  + ++ VDF+ NYDG   EP VL A +PN+L NG  G
Sbjct: 123 GDNPAAARYTEARMTAVAEAMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANGSTG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNA 240
           IAVGMATNIP HN+GE++D  + +I  P+   + L++ + GPDFPTG +++  R  +   
Sbjct: 183 IAVGMATNIPPHNIGELLDASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSLLET 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R    IE       QIVVTEIPYQV K+ ++EKIAEL++ K++  +AD+R
Sbjct: 243 YRTGRGPMRLRSKWEIEDLPRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILADVR 302

Query: 301 DESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           DES  +  R+V+E  R  + D  V++  L+R + L+  F++N+  L +G  P+  ++  +
Sbjct: 303 DES-AEDIRLVLE-PRAKTVDPTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  + +V++RR+K+ ++K   R  VL G  +A  NLD V+ IIR    P    +++
Sbjct: 361 LRAFIDHKRDVLLRRSKHRMDKIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEP----KKI 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M + ++                         LS+VQ  AIL +RL  L  L   ++R EL
Sbjct: 417 MMKEFS-------------------------LSDVQVEAILNMRLRSLRKLEEIELRTEL 451

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSV-----KDELDTPRRTRIVEGLLDMED--- 529
           +SL +E  +  D+L+S       I  EL        K+     RRT + E   D E+   
Sbjct: 452 DSLQLERADLDDLLASEKMQWERIINELRETRKVFGKNSDSGNRRTELAEA-PDFEEVPI 510

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I +E + V  S +G+++ +   V  +Q         +  +D D    +F   T   +
Sbjct: 511 EAMIEKEPITVVCSSMGWLRAMKGHVDLSQE--------LKYKDGDEKRFVFHAETTDKL 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV- 648
           L F   G  Y      LP G    RG           GE I  I+  P D ++  +L++ 
Sbjct: 563 LMFGGNGRFYTMSCSELPGG----RG----------MGEPIRLIVDLPND-ANMVDLFIH 607

Query: 649 ------VFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                 + A+  G+    + +D +   R+GK A+ +
Sbjct: 608 QPDRKLLLASSAGDGFVVEENDIVAQTRTGKQALNV 643


>gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium
           MedeBAC35C06]
          Length = 743

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/612 (38%), Positives = 355/612 (58%), Gaps = 65/612 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +++S+    +++YL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY K AR
Sbjct: 6   SNISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GK+HPHG++A Y+A+  MAQD+S +  L++GQGN+GS D DP   AA RYTE +
Sbjct: 66  TVGDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQD-DPKSFAAMRYTESK 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L+D+L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+I +HN
Sbjct: 125 LTKFAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISSHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
           + EV+D  + V++NP      L++II+GPDF   A I+  +  +   Y+TGRG   I+  
Sbjct: 185 INEVLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQ-- 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312
           ++ +K   D   IV+T +PYQ + + +LE+IA+ +  K++  I DL DE D Q   R+VI
Sbjct: 243 ANWDKEGND---IVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRLVI 299

Query: 313 ELKRG-ASADVILNQLYRYTSLQSL--FSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            LK    +AD ++N L+  T LQ    F++N+++L+G  P  F L  +LK ++ FR+  V
Sbjct: 300 SLKSNRVNADDVMNHLFATTDLQKSYRFNMNLISLSG-NPRVFALDELLKEWIKFRKITV 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ +  L++  DR H+L GLAI   N+DEV++IIR S  P   ++EL ++         
Sbjct: 359 TRKLENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEP---KKELSKK--------- 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS++Q  AILE+RL +L  L +  I  E N L  E  E   
Sbjct: 407 -----------------FKLSDIQVNAILEIRLRQLAKLEQIKIETEQNKLSEEQSEIEK 449

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL+SRSRL  +IK EL+ +K E    R++ I+E        +E+ IV E + + +S  G+
Sbjct: 450 ILASRSRLKTLIKNELIEIKQEFGEERKSPIIESSSAKVFSEEETIVTEPVTIVLSKAGW 509

Query: 548 VKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +            R  KG     S +  R +D + D     ++ + +F +S G  Y    
Sbjct: 510 I------------RSAKGHEIDPSSLSYRGDDLLQDFCRGKSNQNTVFLASNGKAYTLSA 557

Query: 604 WRLPIGSPQARG 615
             L    P ARG
Sbjct: 558 HSL----PSARG 565


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/642 (36%), Positives = 353/642 (54%), Gaps = 49/642 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++  D      I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPDNGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I++ D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSRWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L+ G  P   +L G+L
Sbjct: 301 RDESAEDIRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V+VRR+K+ L +   R  +L G  IA  N+DEV++IIR    P    +++M
Sbjct: 361 QEWLDHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEP----KQVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWS-------------------------LTDTQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL-LDMED--E 530
            L  E K+   +L+S ++    IK E+ S++D+         RRT+  +    D+ D   
Sbjct: 452 GLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
            F++ G  Y     RLP G  +  G+ +  I+ ++  + I T
Sbjct: 564 VFTTGGKFYTIGADRLPGG--RGHGEPIRIIVDMDNDQDIVT 603


>gi|295111080|emb|CBL27830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Synergistetes bacterium SGP1]
          Length = 536

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/384 (50%), Positives = 267/384 (69%), Gaps = 5/384 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  I      E+ I S+ +  E+++SYL YA++VI+GRA+PD+RDGLKPV RR+L+ M
Sbjct: 24  MSEEKIEGQRAGER-ILSLPLVGEIKDSYLNYAMSVIVGRALPDVRDGLKPVQRRVLYAM 82

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N  Y K ARI GE MGKYHPHG+++IYD + R+AQDWSLR  L++GQGNFGSV
Sbjct: 83  SELGLRHNSAYKKSARIVGETMGKYHPHGDSSIYDTMVRLAQDWSLRYCLVDGQGNFGSV 142

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL +    +L D+ +DTV++ PN+D S +EP+ L +  PN+LVNG  
Sbjct: 143 DGDRAAAMRYTEARLHELGELMLADIDEDTVEWGPNFDESLKEPLSLPSVLPNLLVNGST 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVID---NP-DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D    +++   NP +  L  LME + GPDFPTG  ILGR G
Sbjct: 203 GIAVGMATNIPPHNLREVTDVLCWLLEEGINPAEASLADLMERLPGPDFPTGGQILGRQG 262

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRG +++RG  H+E     +  ++VTEIPY VNK  ++E + +  ++K I  I
Sbjct: 263 IYDAYRTGRGKVIVRGRMHVEDGRRGKVNVIVTEIPYAVNKTTLIETMVKAAQDKVIDGI 322

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D+RDES+R+G R+V+EL R A+ D+++ QLY+ T LQ+ F V  +AL+   P    L  
Sbjct: 323 QDIRDESNREGMRIVLELSRDANPDLVMRQLYKRTQLQATFGVINLALDRQTPRLLPLAS 382

Query: 357 ILKAFVAFREEVVVRRTKYLLNKA 380
           IL  F+++R +VV RRT++ LNKA
Sbjct: 383 ILGLFLSYRRDVVRRRTQFRLNKA 406


>gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 759

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 253/720 (35%), Positives = 389/720 (54%), Gaps = 89/720 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV +  V +IDNP  DLDALME ++GPD+PT A +I  +  +K  Y +GRGSI +R
Sbjct: 187 HNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H  K +GD   IV+T +P+Q + A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWH--KENGD---IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F  ++NM+ L+G +P+   L+ I+  ++ +R  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDG-RPQVKGLVQIIAEWLEYRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P+    ELM R       
Sbjct: 361 TVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKA---ELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR E + L  E ++ 
Sbjct: 411 -------------------FDLSAIQADAILEIKLRQLAKLEEIKIRGEQDELSKEREQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+LS  ++    RR+ +V  E    + + D I  E + V +S  
Sbjct: 452 EKLLGSERRLNTLIKKEILSDAEKYGDERRSPLVEREEAKALTERDLIPSEAITVVLSDK 511

Query: 546 GYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           G+++        P ++       Y A  RG                      ++   +F 
Sbjct: 512 GWIRHAKGHEVDPTTLSYKSGDNYLAHARG---------------------KSNQPAIFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   EDE  W     + A+
Sbjct: 551 GSDGRSYALESHSLP--SARSQGEPITGRLNLTPGTNMRQVL-MAEDEQLW-----LMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +     +L  +       ++IL  T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILAITNEGRMLLFPI 662


>gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
 gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
          Length = 758

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 253/711 (35%), Positives = 388/711 (54%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV +  V +I+NP  DLDALME ++GPD+PT A +I  +  +K  Y +GRGSI +R
Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H  K +GD   IV+T +P+Q + A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWH--KENGD---IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F  ++NM+ L+G +P+   L+ I+  ++ +R  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDG-RPQVKGLVEIIAEWLEYRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   N E  + E M R       
Sbjct: 361 TVRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIR---NEEDPKAEFMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR E + L  E ++ 
Sbjct: 411 -------------------FGLSAIQADAILEIKLRQLAKLEEIKIRAEQDELAKEREQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+L+  ++    RR+ +V  E    + + D I  E + V +S  
Sbjct: 452 EKLLGSERRLNTLIKKEILADAEKYGDDRRSPLVEREEAKALTERDLIPSEAITVVLSEK 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     S +  +  D         ++   +F  S G  Y  
Sbjct: 512 GWI------------RHAKGHEVDPSSLNYKSGDSYLAHARGKSNLPAIFLGSDGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L+L  G  +  ++   ED+  W     + A+  G     K
Sbjct: 560 ESHSLP--SARSQGEPITGRLNLTPGTNMRQVL-MAEDDQIW-----LMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPI 710
            +D +  N+SGK  + +     +L  +     END IL  T  G+ + FPI
Sbjct: 612 STDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEGRMLLFPI 662


>gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814]
 gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814]
          Length = 750

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/640 (36%), Positives = 351/640 (54%), Gaps = 60/640 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++++ GI    ++D +   YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +    
Sbjct: 8   DDQDNGIIEEPMSDALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYAMRLLKLNPEL 67

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA R
Sbjct: 68  AFKKSARVVGDVIGKYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGNIDGDSAAAMR 127

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL  AA  LL+ L ++ VDF+  YDG  +EPVVL + +PN+L NG  GIAVGMAT+
Sbjct: 128 YTESRLTPAAQLLLEGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGSSGIAVGMATS 187

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           IP HN  E +D C+ +I+N       L++I+ GPDFPTG  I+     I  AY TGRG  
Sbjct: 188 IPPHNAAETIDACIHLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSILKAYETGRGGF 247

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R     E       QIVVTEIPYQV K+ ++E++AEL+  K+   + D+ DES     
Sbjct: 248 RMRCKWEKEDLPRGLWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDDVMDESAEDIR 307

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            V++   +    DV++  LY+ + L+S FS+NM  L+   P    L  +L+ ++A R+EV
Sbjct: 308 VVLVPRNKLVDPDVLMASLYKMSDLESRFSLNMNVLDHNVPRVMGLKQVLQCYLAHRQEV 367

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRR ++ L+K   R H+L G   A  N+DEV+RIIR+  +P   + ELM+         
Sbjct: 368 IVRRAQHRLDKIEARLHILEGYLKAYLNIDEVIRIIRYEDHP---KEELMK--------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+QT AIL +RL  L  L   +I+ E + L  E  + +
Sbjct: 416 -----------------AFKLSEIQTDAILNMRLRALRKLEEIEIQGEHDKLTQERDKLV 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI---VEGLLDMEDEDCIVREDMVV 540
            ++ S +R    +K++L   ++  D       RR++    VE   D   E  I +E + V
Sbjct: 459 QLIGSEARQWTEVKRQLKIAREVFDPESDLGRRRSKFGVAVEIDADAALEAMIPKEPITV 518

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S +G++        RA +   +    +  +D D +       T   V+  +S G  + 
Sbjct: 519 ILSKMGWI--------RALKGHNQAMDKLKFKDGDELAFTLECQTTDKVVLLASGGKAFT 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
               +LP G    RG           GE I   +  PEDE
Sbjct: 571 FAADKLPSG----RG----------HGEPIRLSIDLPEDE 596


>gi|13810781|gb|AAK40035.1|AF272025_1 DNA gyrase subunit A [Bacillus vallismortis]
          Length = 301

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/300 (60%), Positives = 239/300 (79%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L
Sbjct: 1   PVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYML 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R
Sbjct: 61  VDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME+I GPDFPT   
Sbjct: 121 FPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDLMEVIPGPDFPTAGQ 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 181 ILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 240

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 241 KKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 300


>gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 752

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I+ R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
 gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
          Length = 758

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 254/711 (35%), Positives = 389/711 (54%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV +  V +I+NP  DLDALME ++GPD+PT A +I  +  +K  Y +GRGSI +R
Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H  K +GD   IV+T +P+Q + A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWH--KENGD---IVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F  ++NM+ L+G +P+   L+ I+  ++ +R  
Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDG-RPQVKGLVQIIAEWLEYRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P+    ELM R       
Sbjct: 361 TVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKA---ELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR E + L  E ++ 
Sbjct: 411 -------------------FDLSAIQADAILEIKLRQLAKLEEIKIRGEQDELSKEREQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+L+  ++    RR+ +V  E    + + D I  E + V +S  
Sbjct: 452 EKLLGSERRLNTLIKKEILADAEKYGDERRSPLVEREEAKALTERDLIPSEAITVVLSEK 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     S +  +  D         ++   +F  S G  Y  
Sbjct: 512 GWI------------RHAKGHEVDPSTLNYKSGDSYLAHARGKSNLPAIFLGSDGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L+L  G  I  ++   ED+  W     + A+  G     K
Sbjct: 560 ESHSLP--SARSQGEPITGRLNLTPGTNIRQVL-MAEDDQLW-----LMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPI 710
            +D +  N+SGK  + +     +L  +     END IL  T  G+ + FPI
Sbjct: 612 STDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEGRMLLFPI 662


>gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 752

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
 gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
          Length = 756

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 251/719 (34%), Positives = 398/719 (55%), Gaps = 73/719 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+  
Sbjct: 2   SAEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL ++ + TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  V ++DNP  DLD +M  I+GPD+PT A +I   + IK  Y+TG
Sbjct: 181 MATDIPPHNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V H E +      IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWHKEGSD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R     A+ ++N L+  T L+  F V  NM+ L+  +P+   L+ IL  
Sbjct: 296 HENPTRIVIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLD-LRPQVKGLVSILNE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R
Sbjct: 355 WIEFRRTTVRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDP---KHELMTR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+ +Q  AILE++L +L  L    IR E + L
Sbjct: 412 --------------------------FDLTAIQAEAILEIKLRQLAKLEEIKIRGEQDEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E  +   +L S  RL  +IK+E+L+  ++    RR+ ++E      M + D I  E +
Sbjct: 446 AKERDQLEKLLGSERRLSTLIKKEILADAEKFGDDRRSPLIERDEAKAMTERDLIPSEAI 505

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT-DLFIVSTH----TSVLFFS 593
            V +S  G++            R  KG   V     +F + D ++   H       +F  
Sbjct: 506 TVILSDKGWI------------RHAKGHE-VDPTTLNFKSGDKYLTHAHGKSNAPAVFIG 552

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  Y  +   LP  S +++G+ +   L++  G +IT ++   E++ +W     + ++ 
Sbjct: 553 NNGRSYALESHTLP--SARSQGEPITGRLNITAGSQITHVV-MGEEDQTW-----LISSD 604

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
            G     K SD +  N++GK  + L     +++ ET +    ++IL  T  G+ + FPI
Sbjct: 605 AGYGFVCKGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEILAITNEGRMLLFPI 663


>gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
 gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 241/599 (40%), Positives = 346/599 (57%), Gaps = 35/599 (5%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +     + K A+I+G+VMG +H
Sbjct: 24  DRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASGGGFRKSAKIAGDVMGNFH 83

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+  AA  LL  L
Sbjct: 84  PHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDSPAASRYTEARMTAAAEALLAGL 143

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            ++ VD+R NYDG+ +EPVVL A +PN+L NG  GIAVGMATNIP HNL EV+  C+ +I
Sbjct: 144 DENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLDEVISACLHLI 203

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
             P  D D+L+  I GPDFPTG VI+     I+ AY TGRG+  +R    IE     + Q
Sbjct: 204 RAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQAYRTGRGAFRLRAKWEIEDLGRGQWQ 263

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVIL 324
           I+VTEIPYQV K+ ++E++AEL+  K++  +AD+RDES     R+VIE + R    ++++
Sbjct: 264 IIVTEIPYQVQKSKLIERLAELIALKKVPALADVRDES-ADDVRIVIEPRVRTIEPEMLM 322

Query: 325 NQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             L++ + L+  F++NM V ++G  P+  +L  +L+AF+  R EV+ RRT + L K   R
Sbjct: 323 GMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEVLRAFLDHRREVLQRRTTHRLEKIDHR 382

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY---- 439
             VL G   A  NLD V+ IIR+  +P+ A   L    W       +    D+S Y    
Sbjct: 383 LEVLAGFITAYLNLDRVIDIIRYDEDPKAA---LQAEDWGLK----IPRAADESRYVSPL 435

Query: 440 --TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              + + G   L+EVQ  AIL +RL  L  L   ++ NE ++L  E      ++      
Sbjct: 436 GRPVAAGG---LTEVQADAILNMRLRSLRRLEEIELVNERDALQAERAGLHALMGDEKLQ 492

Query: 498 LGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
              I  EL  V+ +         RRT   EG  + D+  E  I RE + V  S +G+++ 
Sbjct: 493 WSRISDELKDVRKQFGKTSKGGARRTAFGEGKEVADVPLEAMIEREPVTVICSDMGWIRA 552

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +   +   Q         +  +D D     F   T   +L F+S G  Y      LP G
Sbjct: 553 MKGHIALDQE--------MKFKDGDKARFAFHAETTDRLLAFASNGRFYTVLAANLPGG 603


>gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163]
 gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163]
          Length = 756

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/771 (33%), Positives = 408/771 (52%), Gaps = 93/771 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HN+ E+    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRG
Sbjct: 182 TDIPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRMRAV--WKKEDGD---VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  + V  NM+ L+G +P    L+ IL  ++
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDG-RPSVKGLVEILSEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P    + ++ R +
Sbjct: 356 VFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP----KPVLMRQF 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +                         LSE Q  AILEL+L  L  L    IR E + L  
Sbjct: 412 S-------------------------LSETQAEAILELKLRHLAKLEEMKIRGEQDDLAK 446

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVV 540
           E  +   +L+S  +L  +IK+E+ S        RR+ + E      M + D +  E + +
Sbjct: 447 ERDQLQALLASERKLSNLIKKEIQSDAQAYGDDRRSPLHERSESKAMSEHDFVPSEPVTI 506

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D    +    ++  V+F  S G
Sbjct: 507 VLSEMGWV------------RSAKGHDIDPTGLSYKAGDSFRAVAKGKSNQPVVFIDSTG 554

Query: 597 FVYKEKVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             Y       PI  P ARG+   L   L+   G  I  ++   +D+       ++ A+  
Sbjct: 555 RSYALD----PISLPSARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDA 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G       +D +  NR+GK  + L D+   +  +E    +N ++  T  G+ + FP+S +
Sbjct: 605 GYGFVCTFNDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAITAAGRMLLFPVSDL 664

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE---RICYMKHMSAQ 761
                        +S  KG++++S+     + AD+ E   R+ ++  +  Q
Sbjct: 665 -----------PQLSKGKGNKIVSI-----SSADFAEGKDRLTWLYLLPPQ 699


>gi|158428820|pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
           Subunit A (Grla) From Staphylococcus Aureus
          Length = 514

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/505 (40%), Positives = 313/505 (61%), Gaps = 26/505 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 28  IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 87

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 88  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 147

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 148 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 207

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 208 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 267

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 268 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 327

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 328 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 387

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 388 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 432 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 481

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI 520
            LL +IK+EL  +K +  + R + I
Sbjct: 482 ALLNVIKEELNEIKKKFKSERLSLI 506


>gi|309806046|ref|ZP_07700069.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167565|gb|EFO69721.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 487

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/498 (41%), Positives = 310/498 (62%), Gaps = 26/498 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ VV++RT +
Sbjct: 310 KDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKSVVLKRTHF 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++ R  ++ GL  A+  LD+V++ IR S + + A+                ++L++
Sbjct: 370 DLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAK----------------VNLMN 413

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           + S+T          E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++
Sbjct: 414 NYSFT----------EKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDYLDIINNKN 463

Query: 496 RLLGIIKQELLSVKDELD 513
           RL  +I +E   VK  LD
Sbjct: 464 RLEAVIVKEFEDVKKSLD 481


>gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
 gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
          Length = 758

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 399/727 (54%), Gaps = 89/727 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL ++G+ TVD++PN+DG+ +EP +L +R P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ EV +  V +++NP  DLD +M+ ++GPD+PT A I+  +  IK  Y +G
Sbjct: 181 MATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H  K  GD   IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWH--KEEGD---IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R     A+ ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  
Sbjct: 296 HENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLD-QRPQVKGLVSILSE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R
Sbjct: 355 WIEFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDP---KHELMTR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q  AILE++L +L  L    IR E + L
Sbjct: 412 --------------------------FDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E      +L S  RL  +IK+E+L+  ++    RR+ +VE      M + D I  E +
Sbjct: 446 AKERDYLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLIPSEAI 505

Query: 539 VVTVSHLGYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
            V +S  G+++        P ++       Y A  RG                      +
Sbjct: 506 TVVLSDKGWIRHAKGHDVDPTTLNYKSGDKYLAHARG---------------------KS 544

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           +   +F  S G  Y  +   LP  S +++G+ +   L++  G +IT ++   E+E +W  
Sbjct: 545 NAPAVFMGSNGRSYALESHTLP--SARSQGEPITGRLNITAGSQITHVV-MGEEEQTW-- 599

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLG 703
              + ++  G     K +D +  N++GK  + L    ++++ E  +  + ++IL  T  G
Sbjct: 600 ---LISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEILAITNEG 656

Query: 704 QCVRFPI 710
           + + FPI
Sbjct: 657 RMLLFPI 663


>gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114]
 gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114]
          Length = 758

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 399/727 (54%), Gaps = 89/727 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL ++G+ TVD++PN+DG+ +EP +L +R P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ EV +  V +++NP  DLD +M+ ++GPD+PT A I+  +  IK  Y +G
Sbjct: 181 MATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H  K  GD   IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWH--KEEGD---IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R     A+ ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  
Sbjct: 296 HENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLD-QRPQVKGLVSILSE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R
Sbjct: 355 WIEFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDP---KHELMTR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q  AILE++L +L  L    IR E + L
Sbjct: 412 --------------------------FDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E      +L S  RL  +IK+E+L+  ++    RR+ +VE      M + D I  E +
Sbjct: 446 AKERDYLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLIPSEAI 505

Query: 539 VVTVSHLGYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
            V +S  G+++        P ++       Y A  RG                      +
Sbjct: 506 TVVLSDKGWIRHAKGHDVDPTTLNYKSGDKYLAHARG---------------------KS 544

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           +   +F  S G  Y  +   LP  S +++G+ +   L++  G +IT ++   E+E +W  
Sbjct: 545 NAPAVFMGSNGRSYALESHTLP--SARSQGEPITGRLNITAGSQITHVV-MGEEEQTW-- 599

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLG 703
              + ++  G     K +D +  N++GK  + L    ++++ E  +  + ++IL  T  G
Sbjct: 600 ---LISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEILAITNEG 656

Query: 704 QCVRFPI 710
           + + FPI
Sbjct: 657 RMLLFPI 663


>gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 760

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 23  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 83  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 142 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 202 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 259

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 260 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 316

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 317 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 376 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 415 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 466

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 467 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 518

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 519 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 570

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 571 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 624

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 625 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 684

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 685 AEAAKGDDGLAHLYVL 700


>gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 752

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 752

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I+ R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 752

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
 gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
          Length = 757

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 264/747 (35%), Positives = 395/747 (52%), Gaps = 77/747 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R
Sbjct: 187 HNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  + V  NM+ L+  +P    L+ I+  ++AFR +
Sbjct: 302 VIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDN-RPSVKGLVEIITEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+     LMQR       
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQL 451

Query: 488 LDILSSRSRLLGIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +L+S  +L  +IK+E+    L+  DE  +P   R       M + D +  E + + +S
Sbjct: 452 QALLASERKLNTLIKKEIQADSLAYGDERRSPLTERAEAKA--MSEHDFVPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +G+V            R  KG     SG+  +  D         T+  V+F  S G  Y
Sbjct: 510 EMGWV------------RSAKGHDIDPSGLSYKAGDTFRAAARGKTNQPVVFIDSTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G    
Sbjct: 558 ALDPLTLP--SARGQGEPLTGKLTPPPGATIEQVIMAADDQK------LLMASDAGYGFV 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA- 717
              +D +  NR+GK+ + L    + L       ++D+LL+ TK G+ + FP++ +   + 
Sbjct: 610 CTFNDLVARNRAGKVMITLPENAKALPPMEIHGDDDMLLSITKAGRMLMFPVADLPQLSK 669

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   V +     A G+ V+S   VL
Sbjct: 670 GKGNKIVSIPSAQAASGEDVLSWLFVL 696


>gi|294660439|ref|NP_853201.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812099|gb|AAP56769.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930683|gb|ADC30622.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(high)]
          Length = 796

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 244/732 (33%), Positives = 402/732 (54%), Gaps = 50/732 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL    + +L+++ K+TV+F  N+D S  EP +L +  PN+LVNG  GIA G ATNIP
Sbjct: 122 EARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  ID+P+  L+++++++ GPDFPTG +IL   GIKNAY TG+G IVIR
Sbjct: 182 PFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                 K   + +Q+VVT+IP++ NKA+++  I E++   ++  + ++RDESDR G RVV
Sbjct: 242 A-----KIVNENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVV 296

Query: 312 IE--LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++   K       I N LY+YT LQ  +S N V ++  KP + ++   L +++     ++
Sbjct: 297 LQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTIL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                + L K + R  V+ GL  A + +D+++ II+ S + + A   L+ +         
Sbjct: 357 RNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQ------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S +Q  AI+ LRL RLT      ++ E  SL   IK+   
Sbjct: 410 -------------------FSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLG 546
           +L  ++ L   +K+ L S K   +T RR+ I   +E L+ + +   I ++++ +  S  G
Sbjct: 451 LLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLV-INEASIIEKKELYLVSSVDG 509

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +K +    Y   ++     + + ++ +D+++DL  VS+   V F ++ G V      ++
Sbjct: 510 LIKTI---AYDQNKQLNP--TSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKI 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               P+  G  +  + ++   E+I  ++     E S  N  +V  +K+G +++  ++D +
Sbjct: 565 KQAKPREIGMDINELTTIKDNEKIVKLV-----ELSDQNDRIVLVSKYGMIKQISVNDLV 619

Query: 667 QINRSG-KIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            I  +     M L   DE++     +  N ++++ TK    +RF I+ + +  G  S+GV
Sbjct: 620 NIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNL-TGLKSMGV 678

Query: 725 RGISLAKGDQVI 736
           R I L   DQVI
Sbjct: 679 RAIKLKTNDQVI 690


>gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 752

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 752

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVCRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
 gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
          Length = 750

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/607 (38%), Positives = 350/607 (57%), Gaps = 51/607 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  +++ D ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  + ++  + + KC
Sbjct: 11  GIEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGQGFKKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  LI+GQGNFG+VDGD  AA RYTE R
Sbjct: 71  ARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDNAAAMRYTEAR 130

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LLD L +D VD+R  YDG  +EP+VL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 131 MTDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSSGIAVGMATSIPPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGV 253
             E+ + C  +I NPD ++D L+E I+GPDFPTG +++   G I+ AYATGRGS  +R  
Sbjct: 191 AFELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIREAYATGRGSFRVRAR 250

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+    +  IVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES      V++ 
Sbjct: 251 WEVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDVRDESAEDIRVVLVP 310

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             +   A++++  L++ T L++ FS+NM  L+ G  P    +  +L+ ++  R+ V+VRR
Sbjct: 311 RSKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVLREWLDHRKVVLVRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L +   R  VL G  IA  NLDEV+RIIR     + A+  L++             
Sbjct: 371 SEHRLGQINHRLEVLAGYLIAYLNLDEVIRIIR---EEDDAKASLIR------------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++VQ  AIL +RL  L  L   +IR E + L  E  +   +L 
Sbjct: 415 -------------TFELTDVQAEAILNMRLRSLRKLEEFEIRKEHDKLTDEKDQLTKLLG 461

Query: 493 SRSRLLGIIKQELLSVKDELDTP------RRTRIVEG----LLDMEDEDCIVREDMVVTV 542
           S +R    I +E+  +  ++  P      RRT   E     L+D++ +  I +E + V +
Sbjct: 462 SDARQWTKISKEIGEIA-KVYGPETEIGKRRTDKAEAPEADLVDIQ-QAMIEKEPITVII 519

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++        RA +      S +  +  D +   F   T   +L FS+ G  +   
Sbjct: 520 SEKGWI--------RALKGHQADLSSLSFKQGDKLKLSFHAETTDKILVFSTGGKFFTLG 571

Query: 603 VWRLPIG 609
             RLP G
Sbjct: 572 ADRLPGG 578


>gi|330685619|gb|EGG97263.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU121]
          Length = 402

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/394 (46%), Positives = 274/394 (69%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGIIQGLDGIKKAYESGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R++++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSEAIKNFLYKNSDLQISYNFNMVAISDGRPKLMGIKQIIDSYINHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            L  A  R H++ GL  A++ LDEV+ +IR S N
Sbjct: 365 DLEHAEKRMHIVEGLMKALSILDEVIALIRNSKN 398


>gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
 gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
          Length = 752

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 GELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P   + ELM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRHEDEP---KPELMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMS 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S  G+V        
Sbjct: 459 NLLKKELQADADAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQSGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENARVMQPVVIEDETDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKG+  ++   VL
Sbjct: 677 AEAAKGEDGLAQLYVL 692


>gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 760

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 23  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 83  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 142 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 202 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 259

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 260 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 316

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 317 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 376 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 415 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 466

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 467 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 518

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 519 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 570

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 571 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 624

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 625 AGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 684

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 685 AEAAKGDDGLAHLYVL 700


>gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 760

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 23  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 83  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 142 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 202 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 259

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 260 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 316

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 317 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 376 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 415 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 466

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 467 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 518

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 519 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 570

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 571 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 624

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 625 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 684

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 685 AEAAKGDDGLAHLYVL 700


>gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 749

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 12  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 71

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 72  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 130

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 131 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 190

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 191 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 248

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 249 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 305

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 306 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 365 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 404 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 455

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 456 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 507

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 508 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 559

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 560 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 613

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 614 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 673

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 674 AEAAKGDDGLAHLYVL 689


>gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 749

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/481 (44%), Positives = 297/481 (61%), Gaps = 33/481 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V     ++  YL YA++ I+ RA+PD+RDGLKPVHRRIL+ M ++ +     Y+KCA
Sbjct: 13  IEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAMRELRLNPEGGYIKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG YHPHGN AIYDALAR+AQD+++R  L++GQGNFG++DGD PAAERYTE R+
Sbjct: 73  KIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNIDGDNPAAERYTEARM 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+ + +DTV+FRPNYDG  +EPVVL A +PN+L NG  GIAVGMATNIP HN+
Sbjct: 133 TETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGASGIAVGMATNIPPHNV 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+    + +I +P+  ++ L+E++ GPDFPTG VI+  R  I  AY TGRG   +R   
Sbjct: 193 DELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILEAYKTGRGGFRVRARW 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E T+    QIVVTEIPY V KA ++EKIAEL+ +K++  + D+RDES  +  R+V+E 
Sbjct: 253 SKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDVRDESAEE-IRLVLEP 311

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           K R     +++  ++R + L+    +NM  L+ G  P    L  +L  ++  R EV+VRR
Sbjct: 312 KTRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDVLWQWLEHRIEVLVRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L K   R  VL G  IA  N+DEV+RIIR   +P+                  LI 
Sbjct: 372 STHRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKAK----------------LI- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+VQ  AIL LRL  L+ L   +IR+E + L  E +E   +L 
Sbjct: 415 ------------AKFKLSDVQAEAILNLRLRSLSRLEEVEIRSEHDKLSKERRELKQLLK 462

Query: 493 S 493
           S
Sbjct: 463 S 463


>gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 255/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKL-GQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL   L G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060]
 gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS
           2060]
          Length = 748

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/676 (36%), Positives = 364/676 (53%), Gaps = 57/676 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++ N  + KC
Sbjct: 13  GIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPNTAFKKC 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 73  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +D VDFRP+Y+G   EPVVL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 133 LTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQGIAVGMATSIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I +P    + L   ++GPDFPTG +++     I  AY TGRG+  +R  
Sbjct: 193 AAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAEAYRTGRGAFRVRAR 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        +VVTEIPY V KA ++EK+AEL+ E+++  +AD+RDES  +  R+V+E
Sbjct: 253 WTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADVRDES-AEDVRIVLE 311

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     V++  L+R T L+S FS+NM V ++G  P    L   L+ ++  R  V+ R
Sbjct: 312 PRSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEALREWLDHRRTVLQR 371

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L +   R  +L GL I   +LD+V+RIIR    P+    ELM+            
Sbjct: 372 RSRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEPKA---ELMR------------ 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E  +   +L
Sbjct: 417 --------------YFQLTEVQANAILDTRLRSLRKLEEMELKREQAALTAEKADLDALL 462

Query: 492 SSRSRLLGIIKQELLSVKDEL--DTP--RRTRIVEGLLDMED----EDCIVREDMVVTVS 543
            S +     I  ++ +VK     +TP  RR   +E   D  D    E  I RE + V VS
Sbjct: 463 GSEALQWKSIAAQVRAVKKTFGPETPLGRRRTTLENPPDTSDLDLAEAMIEREPITVIVS 522

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++ +   V           SGV  + +D +   F   T   +L  +S G V+    
Sbjct: 523 QKGWIRSLKGHV--------ADLSGVQFKGDDALKLSFPTETTAKLLVLASNGKVFTLDA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +LP G  +  G  +  +  L++G  I T+ P+           ++F T  G        
Sbjct: 575 AKLPGG--RGFGDPIRLMADLDEGTDIVTVWPYRAGAK------LLFGTIDGRGFTTGSD 626

Query: 664 DFIQINRSGKIAMKLD 679
             +   R GK  + LD
Sbjct: 627 GLVANTRKGKQVVALD 642


>gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans
           ORS 571]
          Length = 745

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 240/677 (35%), Positives = 375/677 (55%), Gaps = 55/677 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL  M Q+ ++    + KCA
Sbjct: 13  VEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLKLDPGSGFKKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+ A+YDAL R+AQD++ R  L++GQGNFG+VDGD  AA RYTE RL
Sbjct: 73  RVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEARL 132

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD +  D VDFRP YDGS +EPVVL A +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 133 TETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHNA 192

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E++D  + ++++P+     L++ + GPDFPTG +++    G   AYATGRG+  +R   
Sbjct: 193 AELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAEAYATGRGAFRVRARW 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+T      +VVTEIPY V K+ ++EKIAEL+ +K++  +AD+RDES  +  R+V+E 
Sbjct: 253 HKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADVRDES-AEDIRLVLEP 311

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           + R   A+V++  L++ T L+S  S+NM V + G  P+  +L   L+ ++  R EV++RR
Sbjct: 312 RARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADALREWLDHRREVLLRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++  L++   R  VL G  IA  NLDEV+RIIR    P+    ELM+             
Sbjct: 372 SRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKV---ELMR------------- 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L+++Q  +IL +RL  L  L   ++R E  +L  E ++   +++
Sbjct: 416 -------------TFELTDLQAESILNMRLRSLRRLEEMELRKEHAALTKEQEQLNKLVA 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S +     I +E+          R+T   +  +     D  V  D+  +      V+R P
Sbjct: 463 SEAAQWKAIGKEIRET-------RKTYGPDTEIGRRRTDFAVPPDVHESAFTEALVEREP 515

Query: 553 LSVYRAQR---RGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           +++  + +   R  KG     +GV  + +D +   F   T + ++  SS G  +     +
Sbjct: 516 ITIVMSAKGWIRALKGHVADVTGVPFKGDDTLAHAFYAETTSKIMVLSSNGRFFTLDAAK 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G  +  G+ +  ++ L Q   I ++       +      ++ A++ G        D 
Sbjct: 576 LPGG--RGHGEPVRLMIELEQEAEIVSVF------AHRPGGKLIVASREGRGFVVAEDDC 627

Query: 666 IQINRSGKIAMKLDSRD 682
           +   R GK  + +D+ D
Sbjct: 628 LANTRKGKQVLGVDAPD 644


>gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 752

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 391/736 (53%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
 gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
          Length = 745

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/546 (40%), Positives = 321/546 (58%), Gaps = 40/546 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    + D +   YL YA++ I  R++PD+RDGLKPVHRR+L+ M Q+ ++    + KCA
Sbjct: 14  VRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAMHQLRLDPAAGFKKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+AAIYDA+ R+AQ+++ R  L+EGQGNFG++DGD  AA RYTE RL
Sbjct: 74  RIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+ + ++ VDFR  YDG  QEP+VL A +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 134 TEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAAGIAVGMATSIPPHNA 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           GE+    + +IDNP  +LD L+ ++ GPDFPTG V++     I+ AYATGRG   IR   
Sbjct: 194 GELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIREAYATGRGGFRIRARW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             EK      QI+VTEIPYQV K+ ++E+IA+L+ EK++  +AD+RDES     R+V+E 
Sbjct: 254 AEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADVRDEST-DVVRIVLEP 312

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K R     V++  L+R TSL++ F +NM  L+  + P    L  +L+ ++  R  V+VRR
Sbjct: 313 KSRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREVLRCWLDHRHVVLVRR 372

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G  I   NLDEV+RIIR   +P+ A   LM R            
Sbjct: 373 SEHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPA---LMAR------------ 417

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q  AIL +RL  L  L   +IR E   L  E K    +L 
Sbjct: 418 --------------FALTETQAEAILNMRLRSLRKLEEMEIRKEHKKLSAEQKSLQALLG 463

Query: 493 SRSRLLGIIKQELLSVK----DELDTPRRTRIVE---GLLDMEDEDCIVREDMVVTVSHL 545
           S  +    I +E+ + +    +E +  RR   ++     + +++   + RE + V +S  
Sbjct: 464 SEGKRWKRIAEEIAATRARFGEETELGRRRSTLDAAPAAVVIDERAFVEREMITVILSEK 523

Query: 546 GYVKRV 551
           G+++ V
Sbjct: 524 GWIRAV 529


>gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
 gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
          Length = 749

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 257/737 (34%), Positives = 395/737 (53%), Gaps = 65/737 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL++ ++GPDFPTG +I+  +  I +
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIAD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R   H E  +     IVVT+IP+ V K+ ++EKIAEL+ +K++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWHREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  RVVIE K R    ++++  L++ T L+S  S+N+ V + G  P+   L   
Sbjct: 298 RDES-AEDIRVVIEPKSRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ +   +   R  VL G  IA  N+D+V++IIR    P+ A    
Sbjct: 357 LREWLDHLRDVLLRRSAHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                       LI                 L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 413 ------------LIK-------------AFKLTEVQADAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIV---EGLLDMED 529
            +L  E+K    +L S +R    + +++ +V+D     TP   RRT      E  L   +
Sbjct: 448 KNLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKRRTVFADAPEHDLAALE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G+V+ +   V        +  S +  + +D +   F+  T + +
Sbjct: 508 ESLVEREPVTVVVSDKGWVRTLKGHV--------EDLSNLSFKTDDKLGFAFLAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L Q   I ++        +      +
Sbjct: 560 LLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQDAAIVSLF------VNTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E  ++ T   +   ++ T   + V FP
Sbjct: 612 IASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEAKAITTVAGDQVAVIGTN-HKMVIFP 670

Query: 710 ISAIRVFA-GRNSVGVR 725
           +  +   A GR   GVR
Sbjct: 671 LDQVPEMARGR---GVR 684


>gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 756

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/771 (33%), Positives = 408/771 (52%), Gaps = 93/771 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HN+ EV    V +++NP   L+ L++ ++GPDFPT A +I  R  ++  Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRMRAV--WKKEDGD---VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  + V  NM+ L+G +P    L+ IL  ++
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDG-RPSVKGLVEILSEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P    + ++ R +
Sbjct: 356 VFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP----KPVLMRQF 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +                         LSE Q  AILEL+L  L  L    IR E + L  
Sbjct: 412 S-------------------------LSETQAEAILELKLRHLAKLEEMKIRGEQDDLAK 446

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  +   +L+S  +L  +IK+E+ S        RR+ + E      M + D +  E + +
Sbjct: 447 ERDQLQALLASDRKLSNLIKKEIQSDAQAYGDDRRSPLRERSEAKAMSEHDFVPSEPVTI 506

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D    +    ++  V+F  S G
Sbjct: 507 VLSEMGWV------------RSAKGHDIDPTGLSYKAGDSFRAVAKGKSNQPVVFIDSTG 554

Query: 597 FVYKEKVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             Y       PI  P ARG+   L   L+   G  I  ++   +D+       ++ A+  
Sbjct: 555 RSYALD----PITLPSARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDA 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G       +D +  NR+GK  + L D+   +  +E    +N ++  T  G+ + FP+S +
Sbjct: 605 GYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAITAAGRMLLFPVSDL 664

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE---RICYMKHMSAQ 761
                        +S  KG++++S+     + AD+ E   R+ ++  +  Q
Sbjct: 665 -----------PQLSKGKGNKIVSI-----SSADFAEGKDRLTWLYLLPPQ 699


>gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 756

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/771 (33%), Positives = 407/771 (52%), Gaps = 93/771 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HN+ EV    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRMRAV--WKKEDGD---VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  + V  NM+ L+G +P    L+ IL  ++
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDG-RPSVKGLVEILSEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P    + ++ R +
Sbjct: 356 VFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP----KPVLMRQF 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +                         LSE Q  AILEL+L  L  L    IR E + L  
Sbjct: 412 S-------------------------LSETQAEAILELKLRHLAKLEEMKIRGEQDDLAK 446

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + +
Sbjct: 447 ERDQLQALLASDRKLSNLIKKEIQADAQTYGDDRRSPLYERSEAKAMSEHDFVPSEPVTI 506

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D         ++  V+F  S G
Sbjct: 507 VLSEMGWV------------RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFIDSTG 554

Query: 597 FVYKEKVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             Y       PI  P ARG+   L   L+   G  I  ++   +D+       ++ A+  
Sbjct: 555 RSYALD----PITLPSARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDA 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G       +D +  NR+GK  + L D+   +  +E    +N ++  T  G+ + FP+S +
Sbjct: 605 GYGFVCTFNDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAITAAGRMLLFPVSDL 664

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE---RICYMKHMSAQ 761
                        +S  KG++++S+     + AD+ E   R+ ++  +  Q
Sbjct: 665 -----------PQLSKGKGNKIVSI-----SSADFAEGKDRLTWLYLLPPQ 699


>gi|284931407|gb|ADC31345.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str. F]
          Length = 796

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 243/732 (33%), Positives = 402/732 (54%), Gaps = 50/732 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQTWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL    + +L+++ K+TV+F  N+D S  EP +L +  PN+LVNG  GIA G ATNIP
Sbjct: 122 EARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  ID+P+  L+++++++ GPDFPTG +IL   GIKNAY TG+G IVIR
Sbjct: 182 PFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                 K   + +Q+VVT+IP++ NKA+++  I E++   ++  + ++RDESDR G RVV
Sbjct: 242 A-----KIVNENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVV 296

Query: 312 IE--LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++   K       I N LY+YT LQ  +S N V ++  KP + ++   L +++     ++
Sbjct: 297 LQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTIL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                + L K + R  V+ GL  A + +D+++ II+ S + + A   L+ +         
Sbjct: 357 RNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQ------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S +Q  AI+ LRL RLT      ++ E  SL   IK+   
Sbjct: 410 -------------------FSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLG 546
           +L  ++ L   +K+ L S K   +T RR+ I   +E L+ + +   I ++++ +  S  G
Sbjct: 451 LLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLV-INEASIIEKKELYLVSSVDG 509

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +K +    Y   ++     + + ++ +D+++DL  VS+   V F ++ G V      ++
Sbjct: 510 LIKTI---AYDQNKQLNP--TSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKI 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               P+  G  +  + ++   E+I  ++     E S  N  +V  +K+G +++  ++D +
Sbjct: 565 KQAKPREIGMDINELTTIKDNEKIVKLV-----ELSDQNDRIVLVSKYGMIKQISVNDLV 619

Query: 667 QINRSG-KIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            I  +     M L   DE++     +  N ++++ TK    +RF I+ + +  G  S+GV
Sbjct: 620 NIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNL-TGLKSMGV 678

Query: 725 RGISLAKGDQVI 736
           R I L   D+VI
Sbjct: 679 RAIKLKTNDEVI 690


>gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
 gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
          Length = 757

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 258/738 (34%), Positives = 391/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNNAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    V
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  S  
Sbjct: 198 ALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEIRKIYQNGRGSVRMRAVWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDM 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V +R  Y L+
Sbjct: 313 EQVMNHLFATTDLERSYRINMNMIGLD-HRPSVKGLMAILTEWLEFRRDTVRKRLNYRLD 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQ                   
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E   L  E  +   +L+S  +L 
Sbjct: 411 --------FGISETQAEAILELKLRHLAKLEEVKIRGEQEELAKERDQLQALLASERKLN 462

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +IK+E+    L+  DE    RR+ + E      M + D +  E + + +S +G+V    
Sbjct: 463 TLIKKEIQADALAYGDE----RRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWV---- 514

Query: 553 LSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  KG     SG+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 515 --------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLP- 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       SD +  
Sbjct: 566 -SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTFSDLVAK 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L    + L+       +D+LL+ T  G+ + FP++ +   +   G   V +
Sbjct: 619 NRAGKAMISLPENAKALTPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKGNKIVSI 678

Query: 725 RGISLAKGDQVISMAIVL 742
                A G+  ++   VL
Sbjct: 679 PAAQAAAGEDGLAWLFVL 696


>gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
 gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
          Length = 752

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 342/606 (56%), Gaps = 49/606 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +   ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  + ++    + KC
Sbjct: 13  GVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGSGFKKC 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+AQ ++ R  L++GQGNFG+VDGD  AA RYTE R
Sbjct: 73  ARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGNVDGDNAAAMRYTEAR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD L ++ +DFR  YDG  +EP+VL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 133 LTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGSSGIAVGMATSIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGV 253
             E+ + C  +I NPD ++D L++ I+GPDFPTG +++     I+ AYATGRGS  +R  
Sbjct: 193 AHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIREAYATGRGSFRVRAK 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E     +  +V+TEIPYQV K+ ++EKIAEL+  +++  + D+RDES      V++ 
Sbjct: 253 WEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDESTEDIRVVLVP 312

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
             R   A +++  +++ T L++ FS+NM  L+G K P    +  +L+ ++  R+EV++RR
Sbjct: 313 RSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQVLREWLDHRKEVLIRR 372

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L +   R  VL G  IA  NLDEV+RIIR     + A+ EL++             
Sbjct: 373 SEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIR---EEDDAKAELIR------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++VQ  AIL +RL  L  L   +IR E + L  E  E   +L 
Sbjct: 417 -------------TFSLTDVQAEAILNMRLRSLRKLEELEIRKEHDKLTKEKDELTKLLG 463

Query: 493 SRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG----LLDMEDEDCIVREDMVVTVS 543
           S +R    I +E+  +            RRT   E     L D++ +  I +E + V +S
Sbjct: 464 SDARQWTRISKEIAEISKAYGPETELGKRRTEQAEAPDHDLGDIQ-QAMIEKEPITVIIS 522

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      S +  +  D +   F   T   +L FS+ G  +    
Sbjct: 523 EKGWI--------RALKGHQSDLSTLSFKQGDALKLSFHAETTDKILVFSTGGKFFTLSA 574

Query: 604 WRLPIG 609
             LP G
Sbjct: 575 ANLPGG 580


>gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 756

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 260/771 (33%), Positives = 406/771 (52%), Gaps = 93/771 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HN+ EV    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRG
Sbjct: 182 TDIPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRMRAV--WKKEDGD---VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  + V  NM+ L+G +P    L+ IL  ++
Sbjct: 297 NPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDG-RPSVKGLVEILSEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P    + ++ R +
Sbjct: 356 VFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP----KPVLMRQF 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +                         LSE Q  AILEL+L  L  L    IR E + L  
Sbjct: 412 S-------------------------LSETQAEAILELKLRHLAKLEEMKIRGEQDDLAK 446

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + +
Sbjct: 447 ERDQLQALLASDRKLSNLIKKEIQADAQAYGDERRSPLHERGEAKAMSEHDFVPSEPVTI 506

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D         ++  V+F  S G
Sbjct: 507 VLSEMGWV------------RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFIDSTG 554

Query: 597 FVYKEKVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
             Y       PI  P ARG+   L   L+   G  I  ++   +D+       ++ A+  
Sbjct: 555 RSYALD----PITLPSARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDA 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G       +D +  NR+GK  + L D+      +E    +N ++  T  G+ + FP+S +
Sbjct: 605 GYGFVCTFNDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAITAAGRMLLFPVSDL 664

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE---RICYMKHMSAQ 761
                        +S  KG++++S+     + AD+ E   R+ ++  +  Q
Sbjct: 665 -----------PQLSKGKGNKIVSI-----SSADFAEGKDRLTWLYLLPPQ 699


>gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 749

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 12  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 71

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 72  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 130

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 131 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 190

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 191 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 248

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 249 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 305

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 306 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 365 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 404 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 455

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 456 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 507

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 508 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 559

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 560 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 613

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 614 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 673

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 674 AEAAKGDDGLAHLYVL 689


>gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586]
 gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586]
          Length = 758

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 258/761 (33%), Positives = 403/761 (52%), Gaps = 83/761 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    +A+ID PD  L+AL+  ++GPDFPT A +I  R  I+  Y +GRGS+ +R
Sbjct: 187 HNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEIRKMYESGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWRKEDGS-----VVITSLPHQVSGARVLEQIASQMRAKKLPMLDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+G +P    L  IL  ++AFR +
Sbjct: 302 VLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDG-RPAVKGLREILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+     LM +       
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPV---LMAK------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+E+          RR+ + E      M + D    E + + +S +
Sbjct: 452 QALLASERKMNTLLKKEIQEDAKAYGDDRRSPLHERGEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+L  G  I  ++       + +N  ++ A+  G      
Sbjct: 560 DPLTLP--SARGQGEPLTGKLTLPPGASIEQVL------MAADNQRLLLASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
            +D +  NR GK  + L     +L      +++D+LLT T  G+ + FP++ +       
Sbjct: 612 FADLVARNRVGKAVLTLPDNARVLPPLELQRDDDLLLTITAAGRMLLFPVADL------- 664

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                 +S  KG++++S+     A    D+RI ++  ++ Q
Sbjct: 665 ----PALSKGKGNKIVSIPAAQLASG--DDRILWLMAIAPQ 699


>gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 747

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 247/744 (33%), Positives = 414/744 (55%), Gaps = 77/744 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+S+    ++SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++ + KY K AR 
Sbjct: 8   SISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSKYKKSART 67

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA RYTE +L
Sbjct: 68  VGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAMRYTESKL 126

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A+ L+ +L   TVD++PN+DGS  EPV+  ++ P +L+NG  GIAVGMAT+IP+HN+
Sbjct: 127 TSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATDIPSHNI 186

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV+D  V +++ P  +L+ L++II+GPDF   A +I+    ++  Y++GRG   I+   
Sbjct: 187 NEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGFKIQAQW 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313
             EK S     I++  +PYQ + + +LE+IAE +  K++  + DL DE D +   R+VI 
Sbjct: 247 KQEKNS-----IIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDPVRLVIT 301

Query: 314 LKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVV 370
           LK    +A+ ++N L+  T LQ  + +NM  ++L G  P+ F L+ +LK ++AFR++ V 
Sbjct: 302 LKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKG-GPKVFPLVDLLKEWLAFRKDTVK 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+ ++ L++  DR H+L GL     ++DEV++IIR S  P+                KDL
Sbjct: 361 RKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPK----------------KDL 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I                 LSE+Q  AILE++L +L  L +  + +E N+L  E  E   +
Sbjct: 405 IK-------------AFKLSEIQANAILEIKLRQLAKLEQIKLEDEKNNLDNEQNEIEKV 451

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S++RL  +IK+EL+ +K+     R++ I+E        +ED +V E + V +S  G++
Sbjct: 452 LKSKARLKTLIKKELIEIKEMFGEERKSPIIESSNAKVFSEEDTLVTEPITVVLSKAGWI 511

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                       R  KG       +  R +D + D     ++   +F  S G  Y     
Sbjct: 512 ------------RSAKGHDIDPHSLSYRGDDNLQDFARGKSNQLAVFLDSNGKAYSIPSH 559

Query: 605 RLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATK-HGNVRRNKL 662
            LP  S +  G+ +   L+ + G + I++I+   ED    N  Y++  T  +G +  ++ 
Sbjct: 560 SLP--SARGMGEPITGRLNADSGVQFISSII--GED----NGKYLIMNTAGYGYI--SEF 609

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFA---G 718
            +     ++G+  MKL    ++L      +++  I   + +G+ + F +  + +     G
Sbjct: 610 KNMTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSNIGKLLIFKLEELPILGKGKG 669

Query: 719 RNSVGVRGISLAKGDQVISMAIVL 742
              + +    L+ G++ ++ A VL
Sbjct: 670 NKIINIPKDKLSAGEEFMAHAQVL 693


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 348/627 (55%), Gaps = 49/627 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ + KCA
Sbjct: 16  IEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAKCA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++DGD  AA RYTE R+
Sbjct: 76  RIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEARM 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 136 TDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPHNA 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I++ D  +  LM+ ++GPDFPTG +I+  R  I  AY TGRG   +R   
Sbjct: 196 AELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRSKW 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E        IVVTEIPY V KA ++EKIAEL+  +++  + D+RDES      V++  
Sbjct: 256 SQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLVPK 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R     +++  L++ T L+S F +NM  L+ G  P   +L G+L+ ++  R +V++RR+
Sbjct: 316 SRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLIRRS 375

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +   R  +L G  IA  N+DEV++IIR    P    +++M   W+          
Sbjct: 376 RHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEP----KQVMMARWS---------- 421

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  AIL +RL  L  L   +IR E + L  E K+   +L+S
Sbjct: 422 ---------------LTDNQAEAILNMRLRALRKLEEFEIRKEFDGLSAEKKQIEALLAS 466

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL-LDMED--EDCIVREDMVVTVSHL 545
            ++    IK E+ +++D+         RRT+  +    D+ D     I RE + V VS  
Sbjct: 467 DAKQWSTIKWEVTNIRDKFGPETELGKRRTQFADAPEHDLTDIAHAMIEREPVTVVVSEK 526

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      S +  ++ D +   F   T   VL F++ G  Y     R
Sbjct: 527 GWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVLVFTTGGKFYTIGADR 578

Query: 606 LPIGSPQARGKALINILSLNQGERITT 632
           LP G  +  G+ +  I+ ++  + I T
Sbjct: 579 LPGG--RGHGEPIRIIVDMDNDQDIVT 603


>gi|293510133|ref|ZP_06668841.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|291467077|gb|EFF09595.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 752

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/690 (34%), Positives = 387/690 (56%), Gaps = 58/690 (8%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   +K + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS
Sbjct: 1   MYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D DPPAA RYTE +L   A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG 
Sbjct: 61  IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI+ G AT+IP HNL EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK 
Sbjct: 121 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +G+G I++R     E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++
Sbjct: 181 AYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEV 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDE+DR G R+ IELK+  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ 
Sbjct: 241 RDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIID 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           +++  + EVV  RTK+ L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++
Sbjct: 301 SYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                         +E Q  AI+ L+L RLT      +  E   
Sbjct: 361 --------------------------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKE 394

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIV-RED 537
           L   IK+   IL +   LL +IK+EL  +K +  + R +    E      D++ +V  E+
Sbjct: 395 LEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEE 454

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++++++  GY+KR  +  Y A      G   + ++D D +     V+T  +VL F++ G 
Sbjct: 455 VILSMTRHGYIKRTSIRSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKG- 508

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN---------NLYV 648
               +   +P+         L +I     G+ ++ I+P  EDE   N         + + 
Sbjct: 509 ----RYLFIPV-------HKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFY 557

Query: 649 VFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           VFAT++G ++++ +  F +  R  K  IA K+   D+++SV    ++  I + T  G  +
Sbjct: 558 VFATQNGMIKKSTVPLF-KTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSL 616

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +  S +    G  + GV+ I+L   D V+
Sbjct: 617 TYNTSELSD-TGLRAAGVKSINLKAEDFVV 645



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 21/248 (8%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +  +   N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 456 ILSMTRHGYIKRTSIRSY---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 512

Query: 708 FPISAIRVFAGRN-SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +     +     V  I   + D+V+   I +  + D++    Y+   + Q  +I 
Sbjct: 513 IPVHKLADIRWKELGQHVSQIVPIEEDEVV---INVFNEKDFNTDAFYV--FATQNGMIK 567

Query: 767 GDTEEI--TSLKNDSSVEGNISE--ERCQELKL-KEQFILTVSEKGFGKRTSSYDFRISN 821
             T  +  T+  N   +   + E  +    ++  K+Q I  ++ KG      S  +  S 
Sbjct: 568 KSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGM-----SLTYNTSE 622

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            S  G+RA  V  IN       V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 623 LSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 682

Query: 880 VVIFSTAK 887
           + +    K
Sbjct: 683 ITLLKELK 690


>gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 752

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 748

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/748 (33%), Positives = 408/748 (54%), Gaps = 75/748 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY K AR
Sbjct: 7   NSISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSKYKKSAR 66

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA RYTE +
Sbjct: 67  TVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAMRYTESK 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A+ L+ +L   TVD++PN+DGS  EPV+  A+ P +L+NG  GIAVGMAT+IP+HN
Sbjct: 126 LTNFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATDIPSHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
           + EV+D  V +++ P  DL  L++II+GPDF   A I+     ++  Y++GRG   I+  
Sbjct: 186 INEVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGFKIQA- 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
               +   D+ QI++  +PYQ + + +LE+IAE +  K++  + DL DE D +   R+VI
Sbjct: 245 ----QWMQDKNQIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDPIRLVI 300

Query: 313 ELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVV 369
            LK    +A+ ++N LY  T LQ  + VNM  ++L G  P+ F+L+ +LK +V FR++ +
Sbjct: 301 TLKSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKG-GPKVFSLVDLLKEWVIFRKDTL 359

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ ++ L++  DR H+L GL     +LD+V++IIR S  P   ++EL++          
Sbjct: 360 KRKLEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEP---KKELIK---------- 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AILE+RL +L  L +  I NE N L  E  +   
Sbjct: 407 ----------------AFKLSEIQANAILEIRLRQLAKLEQLKIENERNELVNERDDIEK 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL S+SRL  +IK EL  +K+     R++ I+         +E+ IV E + V +S  G+
Sbjct: 451 ILKSKSRLKTLIKNELNEIKELFGEERKSPIINSTNAKIFSEEETIVTEPITVVLSKAGW 510

Query: 548 VKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           V            R  KG     + +  R +D + D     ++   +F  S G  Y  + 
Sbjct: 511 V------------RSAKGHEIDPNTLSYRGDDSLQDFARGRSNQLAIFLDSNGKAYSIQS 558

Query: 604 WRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             LP  S +  G+ +   L+ + G + I++++         N   ++    +G +  ++ 
Sbjct: 559 HSLP--SARGMGEPITGRLNADSGVQFISSVIGV-----EGNKFLIMNTAGYGYI--SEY 609

Query: 663 SDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFA---G 718
            + I   ++G+  MKL    ++L ++        I   + +G+ + F I  + +     G
Sbjct: 610 QNMISNKKTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSNIGKLLIFNIEELPILGKGKG 669

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADA 746
              + +    LA G++ ++ A +L  D+
Sbjct: 670 NKIINIPKDKLAAGEEFMAHAQLLADDS 697


>gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 750

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/608 (38%), Positives = 348/608 (57%), Gaps = 47/608 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +   ++  YL YA++ I+GRA+PD+RDGLKPVHRRI+  M  + ++  + Y KCA
Sbjct: 14  IEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRILRLDPGQGYKKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+A+IYDAL R++QD+++R  LI+GQGNFG+VDGD PAA RYTE R+
Sbjct: 74  RIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNVDGDSPAAMRYTEARM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL  + +D VDF+  Y+   +EP+VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 134 TDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSSGIAVGMATSIPPHNA 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I+NPD   DAL+  ++GPD PTG VI+  +  I+ AY TGRGS  +R   
Sbjct: 194 AELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIREAYDTGRGSFRVRARW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E        +VVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES  +  R+VIE 
Sbjct: 254 ETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDIRDES-AEDVRIVIEP 312

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K R    ++++  L+R T L+S   +NM  L+G K P   +L  +L  ++A + +V+VRR
Sbjct: 313 KSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDVLAEWLAHQRDVLVRR 372

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L +   R  +L G  IA  NLDEV+RIIR    P+T   ELM+             
Sbjct: 373 SRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKT---ELMR------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++ Q  AIL +RL  L  L   +++ E ++L  E  E   +L+
Sbjct: 417 -------------TFELTDTQAEAILNMRLRSLRKLEEFELKREFDTLTGEKAEKEALLA 463

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  R    I  E+  V++     ++T+I        D      +D+ V +     +++ P
Sbjct: 464 SDERQWAGIAAEVREVRETYS--KKTKIGRRRTMFADAPNRALDDITVAL-----IEKEP 516

Query: 553 LSVYRAQR---RGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           ++V  +++   RG KG     S +  R+ D +   F   T   +LF S+ G  +     +
Sbjct: 517 ITVVLSKKGFLRGMKGHLADFSSLAFREGDGLQLAFHAMTTDKLLFLSTGGRAFTHGADK 576

Query: 606 LPIGSPQA 613
           LP G  Q 
Sbjct: 577 LPGGRGQG 584


>gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703]
 gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703]
          Length = 757

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 264/750 (35%), Positives = 403/750 (53%), Gaps = 83/750 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ EV    V
Sbjct: 138 GELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREVAAAAV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+IDNPD  LDAL++ ++ PDFPT A +I  R  ++  Y TGRGS+ +R V   E  S  
Sbjct: 198 ALIDNPDATLDALLQHVQAPDFPTEAEIITSRDELRKMYETGRGSVRMRAVWKKEDGS-- 255

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA--SA 320
              +V+T +P+QV+ A +LE+IA  +R K++  I DLRDESD +    ++ + R      
Sbjct: 256 ---VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTRLVLVPRSNRIDL 312

Query: 321 DVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           D+++N L+  T L+  +  ++NM+ L+G +P    L  IL  ++AFR + V RR  + L+
Sbjct: 313 DMVMNHLFATTDLEKSYRINMNMIGLDG-RPGVKGLQEILTEWLAFRRDTVRRRLSFRLD 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R HVL GL +A  N+DEV+ IIR    P+     LM R                  
Sbjct: 372 KVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPKPV---LMAR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q  AILEL+L  L  L    IR E + L  E  +  DIL+S  ++ 
Sbjct: 411 --------FGLSDTQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQIQDILASERKMS 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+E+ +        RR+ + E      M + D    E + + +S +G+V        
Sbjct: 463 SLLKKEIQADAKAYGDDRRSPLQERAEAKAMSEHDLSPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLNYKAGDNYRAAARGKSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+L  G  +  ++    DE       ++ A+  G       SD +  NR G
Sbjct: 569 GQGEPLTGKLTLPPGATVEQVL-MTADEQR-----LLLASDAGYGFICTFSDLVARNRVG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    ++L     + ++D+LLT T  G+ + FP++ +             +S  K
Sbjct: 623 KAVLALPDNAKVLPPLEVSHDDDLLLTITAAGRMLLFPVADL-----------PQLSKGK 671

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQ 761
           G++++  AI     A  ++RI +++ +S +
Sbjct: 672 GNKIV--AIPAAQAASGEDRILWLQVISPR 699


>gi|294155860|ref|YP_003560244.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
 gi|291599928|gb|ADE19424.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
          Length = 912

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/711 (32%), Positives = 390/711 (54%), Gaps = 43/711 (6%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPVHRRIL+ M ++G+  +K Y K AR+ G+V+GKYHPHG+ 
Sbjct: 28  YSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTNDKPYKKSARVVGDVIGKYHPHGDT 87

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++YDA+  M+Q W   + L++  GN GS+D DP AA RYTE R+ K  +++L+DL K+TV
Sbjct: 88  SVYDAMVNMSQWWKSGIPLLDMHGNVGSLDNDPAAAMRYTEVRMAKVCNYMLEDLKKNTV 147

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F PN+D S +EP VL   +PN+LVNG  GIA+GMAT +P HNL EV++  +A +  P I
Sbjct: 148 AFIPNFDDSEKEPSVLPTIFPNLLVNGTTGIAIGMATEMPPHNLNEVLEATIAKLRRPSI 207

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-GSIVIRGVSHIEKTSGDREQIV-VT 269
            LD LME I+GPDFPTG +I G  G+  A+ +G+     I+     E    D+ Q + +T
Sbjct: 208 TLDGLMEHIKGPDFPTGGIIYGNKGVFEAFESGKLEKEKIKLFCKYEVVKKDKLQFIEIT 267

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIP+ V K+ ++  I  L+  + I  + +++D+SDR+G ++VI L   A+ + I++ L +
Sbjct: 268 EIPFGVVKSQLVYDIDVLINTETIDGLLEIKDQSDREGIKIVITLSEEANVESIISFLLQ 327

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            TS+Q  +S N V ++   P+   L  +L+A++   + +  R   Y L K   R  +++G
Sbjct: 328 KTSMQVNYSYNNVVIHNNSPKLMGLNELLEAYIEHIKIIKTRTLTYDLEKYLLRLEIVLG 387

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
                   D+V+++IR +   + A  E +  ++N                          
Sbjct: 388 FIKVSEIPDKVIKVIRATEGGKAAVIENLMNAFN-------------------------F 422

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +  Q  AI ELRL RL+   ++    E   L  +I    ++L    + +  +   L  + 
Sbjct: 423 TTNQATAIAELRLYRLSKTDKEAFLIEQADLEKKIANTKELLDDEKKFVNYLILLLKQMI 482

Query: 510 DELDTPRRTRIVEGLLDM-EDEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            ++ TPRRT+I E       D+  +V+E++V +  S LGY+KR+   V  +        S
Sbjct: 483 KDMPTPRRTQIFEEEFTFNHDKKDLVKEEIVNIAFSKLGYIKRLSQKVVDSN-----DFS 537

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              ++++D++  +   +T  + L F++ G      V+++     +  G  L   + L  G
Sbjct: 538 TFALKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYKIQETKWKELGTHLSAFVDLAPG 597

Query: 628 ERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEI 684
           E I  ++    +   WN+  ++V ATK G  +R K+ DF +++R+ K   A+ +D++DE+
Sbjct: 598 ENIINVI----EVEDWNSPDFIVMATKLGFFKRTKIKDF-EVSRTNKTYTAINIDNKDEV 652

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++V       DIL+ T +G   ++  + I ++ G  + G +G+ L   D V
Sbjct: 653 INVAVSDGTKDILIITAMGFATKYNEAEISLY-GPKAKGTKGVYLVNKDFV 702


>gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 752

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ I  V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRIGAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
 gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
          Length = 755

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/729 (34%), Positives = 389/729 (53%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R +  D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSSRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +             +S 
Sbjct: 617 AGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDL-----------PQLSK 665

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 666 GKGNKIISI 674


>gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 752

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/729 (34%), Positives = 386/729 (52%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E N L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLARLEEMKIRGEQNELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S  G+V        
Sbjct: 459 TLLKKELQADADAFGDDRRSPLHEREEAKAMNEHDMLPSEPVTIVLSQSGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKSGDSFKAAVKGKSNQPVAFIDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMEADDQK------LLMASDAGYGFICTFNDLVSRNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +             +S 
Sbjct: 617 AGKALISLPDNAHVMPPLIIENESDMLLAITAAGRMLMFPVSDL-----------PELSK 665

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 666 GKGNKIISI 674


>gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2]
 gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2]
          Length = 750

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/634 (37%), Positives = 351/634 (55%), Gaps = 53/634 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   V++ + ++  YL YA++ I+GRA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 15  GTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKC 74

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYTE R
Sbjct: 75  AKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDGAAAYRYTEAR 134

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL+ + +D+VDFR NY G  QEPVVL +  PN+L NG  GIAVGMAT+IP HN
Sbjct: 135 MTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGAQGIAVGMATSIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           L E+ D  + ++ + D   D L+    GPDFPTG V++  +  I   Y TGRGS+ +R  
Sbjct: 195 LAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIAETYRTGRGSLRLRAR 254

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+ +     IVVTEIPY V K+ ++EKIAEL+ +K++  +AD+RDES  +  RVVIE
Sbjct: 255 WSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVADIRDES-AEDVRVVIE 313

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            K R     +++  L+R T L++ F VN+ V ++G  P   +    L+ ++  R EV+VR
Sbjct: 314 PKSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEALQQWLDHRREVLVR 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L +   R  +L G+ I   NLDEV+RIIR    P    +E +Q +++        
Sbjct: 374 RARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEP----KERLQLAFS-------- 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q   +L+ RL  L  L    I+ E  +L  E  E   +L
Sbjct: 422 -----------------LSDMQVNYVLDTRLRSLRRLEEMQIQREHEALEKEKLELEALL 464

Query: 492 SSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE----GLLDMEDEDCIVREDMVVTV 542
           +  +R    I  E+  +K +         RRT   E    G +D      + RE + V V
Sbjct: 465 ADEARQWKKIAAEIRDLKKKYGPETKLGRRRTSFAEAPDVGEIDFASA-MVEREPVTVVV 523

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++        RA +      SG+  + +D +   F   T + +L  S  G ++   
Sbjct: 524 SEKGWI--------RALKGQVADLSGLQFKGDDSLHISFFAETTSKILVLSGDGKIFTLD 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
             +LP G  Q  G+ L  +  + +GE +  + P+
Sbjct: 576 AGKLPGGRSQ--GEPLRLLADIGEGESVAAVFPY 607


>gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 760

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 23  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 83  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 141

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 142 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 201

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A I+  +  I+  Y  GRGS+ +R V   E  +  
Sbjct: 202 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENGRGSVRMRAVWTKEDGA-- 259

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 260 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 316

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 317 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 376 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 415 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 466

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 467 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 518

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 519 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 570

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 571 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 624

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKL-GQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL   L G+ + FP+ ++   +   G   + +  
Sbjct: 625 AGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLSKGKGNKIINIPS 684

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 685 AEAAKGDDGLAHLYVL 700


>gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
 gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
          Length = 752

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/740 (34%), Positives = 387/740 (52%), Gaps = 85/740 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 GELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P   + ELM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRHEDEP---KPELMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  +     RR+ +   E    M + D +  E + + +S  G+V        
Sbjct: 459 NLLKKELQADAEAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQSGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRRNKLSDFI 666
           ARG          QGE +T  +  P   +  + L       ++ A+  G       +D +
Sbjct: 563 ARG----------QGEPLTGKLTLPPGATVEHMLMENDDRKLLMASDAGYGFVCTFNDLV 612

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSV 722
             NR+GK  + L     ++       E D+LL  T  G+ + FP+S +   +   G   +
Sbjct: 613 ARNRAGKALITLPENAHVMPPVVIEDETDMLLAITTAGRMLMFPVSDLPQLSKGKGNKII 672

Query: 723 GVRGISLAKGDQVISMAIVL 742
            +     AKG+  +++  VL
Sbjct: 673 NIPSAEAAKGEDSLALLYVL 692


>gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 752

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   L+ L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     ++E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGITETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++++EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 SLLRKELQADSDAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  I  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATIEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       END+LL  T+ G+ + FP+ ++   +   G   V +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDENDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIVNIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDSLAHLYVL 692


>gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
          Length = 761

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032]
 gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032]
          Length = 756

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/747 (34%), Positives = 397/747 (53%), Gaps = 77/747 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV    V++ID+P   LD L++I++GPD+PT A +I  R  I+  Y +GRGS+ +R
Sbjct: 187 HNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  +     +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWKKEDGA-----VVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR +
Sbjct: 302 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLVFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L+K   R H+L GL +A  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPKPV---LMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL+S  ++  ++K+E+ +  D     RR+ +   E    M + D +  E + + +S +
Sbjct: 452 QGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG             D ++ S    T+  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDAKALSYKAGDNWLSSAKGKTNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                P+  P ARG+   L   L+L  G  +  ++   ED+       ++ A+  G    
Sbjct: 560 D----PVSLPSARGQGEPLTGKLTLPPGAVVEHMLMTGEDQK------LLMASDAGYGFV 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA- 717
              +D +  NR+GK  + L     +L       ++D+LL  T  G+ + FP++ +   + 
Sbjct: 610 CTFNDLVARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLPQLSK 669

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   + +     AKGD  ++   +L
Sbjct: 670 GKGNKIISIPSADAAKGDDKLAYLTIL 696


>gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895]
          Length = 752

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/740 (34%), Positives = 387/740 (52%), Gaps = 85/740 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   L+ +++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     ++E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGITETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLNYKSGDSWKASAKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRRNKLSDFI 666
           ARG          QGE +T  +  P   +  + L       ++ A+  G       +D +
Sbjct: 563 ARG----------QGEPLTGKLTLPPGATVEHMLMEGDEQKLLMASDAGYGFVCTFNDLV 612

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSV 722
             NR+GK  + L     ++       E D+LL  T  G+ + FP+S +   +   G   +
Sbjct: 613 ARNRAGKALITLPENAHVMPPVVIEDETDMLLAITAAGRMLMFPVSDLPQLSKGKGNKII 672

Query: 723 GVRGISLAKGDQVISMAIVL 742
            +     A+GD  ++   VL
Sbjct: 673 NIPSAEAARGDDTLAQLYVL 692


>gi|46019126|emb|CAE52027.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 293

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/292 (61%), Positives = 232/292 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP 
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPA 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIQELMEYIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           +LVR+K+I  I DLRDESDR G RVVIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRVVIEIRRDANAHVILNNLYKQTALQTSF 292


>gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
 gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
          Length = 749

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/737 (34%), Positives = 393/737 (53%), Gaps = 65/737 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IHDVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    +L+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R   + E+ +     IVVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYMTGRGAFRTRAKWNQEEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  RVVIE K R    ++++  L++ T L+S  S+N+ V + G  P+   L   
Sbjct: 298 RDES-AEDIRVVIEPKSRNVDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A   L
Sbjct: 357 LREWLDHLRDVLLRRSAYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPA---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                             L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 414 MK--------------------------AFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIV---EGLLDMED 529
            +L  E+K    +L S +R    + +++ +V+D     TP   RRT      E  L   +
Sbjct: 448 KNLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKRRTVFADAPEHDLAALE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V+ +   V        +  S +  +  D +   F   T + +
Sbjct: 508 ESLVEREPVTVVLSDKGWVRTLKGHV--------EDLSSLSFKTNDKLGFAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + + Q   I ++        +      +
Sbjct: 560 LLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDMEQDAAIVSLF------VNTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E  ++ T   +   ++ T   + V FP
Sbjct: 612 IASHEGQGFIVNEDDCVGTTRKGKQVLNVEMPNEAKAIVTVAGDQVAVIGTN-HKMVIFP 670

Query: 710 ISAIRVFA-GRNSVGVR 725
           +  +   A GR   GVR
Sbjct: 671 LDQVPEMARGR---GVR 684


>gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
 gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
          Length = 757

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/745 (33%), Positives = 397/745 (53%), Gaps = 73/745 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA+ID P   LD L+  ++GPDFPT A +I  R  I+  Y  GRGS+ +R
Sbjct: 187 HNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V + E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD+Q    +
Sbjct: 247 AVWNKEDNSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDQQNPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ +R +
Sbjct: 302 VVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDN-RPQVKGLVEILTEWLTYRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL +A  N+D+V+ IIR    P+     LMQ        
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPKPV---LMQ-------- 409

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             +  +S+ Q  AILEL+L  L  L    IR E ++L  E  + 
Sbjct: 410 ------------------SFGISDTQAEAILELKLRHLAKLEEFKIRGEQDALVKERDQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  +L  ++K+E+ +        RR+ I+E      M + D +  E + + +S +
Sbjct: 452 QALLASERKLNILLKKEIQADAQAYGDDRRSPIIERAEAKAMNEHDFVPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG      G+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIEPGGLSYKAGDSFRSAARGKSNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G      
Sbjct: 560 DPLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFA--- 717
            +D +  NR+GK+ + L    ++L  +E   ++N +L  T  G+ + FP++ +   +   
Sbjct: 612 FNDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNMLLSITAAGRILMFPVTDLPQLSKGK 671

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
           G   V +     A G+  ++  +VL
Sbjct: 672 GNKIVSIPATQAATGEDKLAWLLVL 696


>gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1]
          Length = 752

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/738 (34%), Positives = 390/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAVI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P   R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLHER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       SD +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFSDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|603238|gb|AAA57342.1| DNA gyrase A subunit [Mycoplasma gallisepticum]
 gi|1583653|prf||2121321B DNA gyrase:SUBUNIT=A
          Length = 383

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/366 (50%), Positives = 259/366 (70%), Gaps = 1/366 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPV   +L+G    G+  +K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPV-TWVLYGAYTSGLTHDKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD   A RYTE RL
Sbjct: 77  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAGAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 137 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 197 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 257 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 317 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 376

Query: 376 LLNKAR 381
            L KA+
Sbjct: 377 ELKKAK 382


>gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1]
 gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1]
          Length = 750

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/679 (34%), Positives = 367/679 (54%), Gaps = 57/679 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           + V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +   + + KCAR
Sbjct: 15  SPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHTMRLLRLNPEQGFAKCAR 74

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMGK+HPHG+ +IYDAL R+AQ +++R  L++GQGNFG++DGD  AA RYTE R+ 
Sbjct: 75  IVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGNIDGDNAAAMRYTEARMT 134

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  LL  + +D VDFRP Y+   +EP+VL   +PN+L NG  GIAVGMAT++P HN  
Sbjct: 135 EVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGSSGIAVGMATSVPPHNAA 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           EV D  +A+ID+PD+ +  L++ ++GPDFPTG +I+ GR  I+ AY TGRG   +R   H
Sbjct: 195 EVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIREAYETGRGGFRLRARWH 254

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E        +VVTEIPY V K+ ++EKIAEL+  +++  + D+RDES      V++   
Sbjct: 255 KEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLEDVRDESAEDIRVVLVPKS 314

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
           R    ++++  L+R T L++ F +NM  L+ G  P   +L  +L+ ++  R EV+VRR++
Sbjct: 315 RAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDVLREWLDHRREVLVRRSQ 374

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +   R  +L G  +A  N+DEV+ IIR    P+     +M+R              
Sbjct: 375 HRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEPKPV---MMER-------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L++ Q  AIL +RL  L  L   +IR E + L  E  +   +L+S 
Sbjct: 418 ------------FNLTDNQAEAILNMRLRALRKLEEFEIRTEFDKLSEEKTQIEALLASE 465

Query: 495 SRLLGIIKQELLSVKDELDTPR-----RTRIVEG---LLDMED--EDCIVREDMVVTVSH 544
           ++    ++ E+  V+   D  +     R R   G     D+ED  +  I RE + V +S 
Sbjct: 466 AKQWKTVRWEVAKVRQTFDPEKNPALGRRRTTFGDAPSHDLEDVQQAMIEREPITVILSE 525

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +      S VV ++ D +   F   T   +L F++ G  Y     
Sbjct: 526 KGWL--------RAMKGHLTDLSTVVFKEGDSLKLSFHAQTTDKILLFTTGGKFYTIGGD 577

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           RLP G  +  G+ +  ++ +   + + T   F  D        ++ A+  GN       +
Sbjct: 578 RLPGG--RGHGEPVRIMVDMENDQAVVTA--FAHDPER----RLLIASYAGNGFIVPEKE 629

Query: 665 FIQINRSGKIAMKLDSRDE 683
            +   R GK  M + + DE
Sbjct: 630 VVANTRKGKQIMNVKTPDE 648


>gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591]
 gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591]
          Length = 758

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 258/761 (33%), Positives = 402/761 (52%), Gaps = 83/761 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    +A+ID PD  L+AL+  ++GPDFPT A +I  R  I+  Y +GRGS+ +R
Sbjct: 187 HNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEIRKMYESGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDESD +    +
Sbjct: 247 AVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  +  ++NM+ L+G +P    L  IL  ++AFR +
Sbjct: 302 VLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDG-RPSVKGLREILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+     LM +       
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPV---LMAK------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+E+          RR+ + E      M + D    E + + +S +
Sbjct: 452 QALLASERKMNTLLKKEIQEDAKAYGDDRRSPLHERGEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+L  G  I  ++       + +N  ++ A+  G      
Sbjct: 560 DPLTLP--SARGQGEPLTGKLTLPPGATIEQVL------MAADNQRLLLASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
            +D +  NR GK  + L     +L      +++++LLT T  G+ + FP++ +       
Sbjct: 612 FADLVARNRVGKAVLTLPDHARVLPPLELQRDDELLLTITAAGRLLLFPVADL------- 664

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                 +S  KG++++S+     A    D+RI ++  ++ Q
Sbjct: 665 ----PALSKGKGNKIVSIPAAQLASG--DDRILWLMTIAPQ 699


>gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
 gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
          Length = 752

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/738 (34%), Positives = 391/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ IR V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRIRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187]
 gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187]
          Length = 759

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/758 (32%), Positives = 412/758 (54%), Gaps = 73/758 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E   +G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSDAELSLEGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP 
Sbjct: 61  SALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL + +  LL +L + TV+++PN+DG+ QEP +L AR P++L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYA 242
           VGMAT+IP HN+ EV   C+ +++ PD  +  L+E ++GPD+PT A +I  R+ I+  Y 
Sbjct: 180 VGMATDIPPHNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G+GSI  R V H+E   GD   IV+T +P+Q + A ++E+IA  ++ K++  ++DLRDE
Sbjct: 240 SGKGSIKARAVYHME--DGD---IVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDE 294

Query: 303 SDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD +    ++ + R    DV  ++  L+  T L+  + VN+  L   ++P+   L+ IL 
Sbjct: 295 SDHENPTRLVIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++AFR E V RR ++ L+K  +R H+L GL IA  N+DEV+ IIR   N +  ++ELM+
Sbjct: 355 EWLAFRRETVRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIR---NEDEPKKELMR 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q  AIL+L+L  L  L    IR E + 
Sbjct: 412 R--------------------------FGLSEIQADAILDLKLRHLAKLEEFKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVRED 537
           L  E  +   +L S  +L  ++K+E+ +  ++    RR+ +VE      + +++    E 
Sbjct: 446 LAKERDQLEALLGSARKLGNLLKKEIQADAEKYGDDRRSPLVERQEAKQLTEKELTPSEL 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFS 593
           + V VS +G+V            R  KG    V        D ++VS    ++   +F +
Sbjct: 506 VTVVVSEMGWV------------RAAKGHDVDVQGLNYKAGDGYLVSAQGRSNQQTVFMT 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  Y  +   LP  S + +G+ L   LS   GE+   ++   EDE        +  + 
Sbjct: 554 NLGRTYSLEAHTLP--SARGQGEPLTGKLSFTAGEQTRYVLLGNEDER------YLICSD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPI 710
            G     + +D I  N++GK  + L    ++L  +   +++D    L+ +  G+ + FP+
Sbjct: 606 AGYGFLCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDDALCLVISNEGRMLLFPL 665

Query: 711 SAIRVFA---GRNSVGVRGISLAKGDQVISMAIVLHAD 745
           + +       G   +G+    +A  ++ ++   V+ AD
Sbjct: 666 NTLPQLGKGKGNKLIGIPADKVASREEFVTHVAVVKAD 703


>gi|145642256|ref|ZP_01797822.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273061|gb|EDK12941.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 316

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/318 (57%), Positives = 241/318 (75%), Gaps = 7/318 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGA 318
           D S+++G R+ I++KR A
Sbjct: 294 DLSNKEGIRIEIDIKRDA 311


>gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 752

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 385/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 GELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLTFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+     LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPV---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E N L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D    E + + +S  G+V        
Sbjct: 459 TLLKKELQADADAFGDDRRSPLHEREEAKAMNEHDMQPSEPVTIVLSQSGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKAGDSFKAAVKGKSNQPVAFIDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMEADDQK------LLLASDAGYGFICTFNDLVSRNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKAMISLPDNAHVMPPLVVENESDMLLAITSAGRMLMFPVSDLPELSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKG+  ++   +L
Sbjct: 677 AEAAKGEDGLAHLFIL 692


>gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
 gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
          Length = 761

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 262/746 (35%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHNVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395]
 gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 761

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 262/746 (35%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 750

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/612 (38%), Positives = 345/612 (56%), Gaps = 56/612 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + D ++  YL YA++ I+ RA+PD+RDGLKPVHRR+LF M Q+ ++    + KCA
Sbjct: 12  IEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAMRQLKLDPAGGFKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+AQ +S R  L++GQGNFG++DGD  AA RYTE R+
Sbjct: 72  RVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNIDGDNAAAMRYTEARM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LLD + +DTVDFR  YDG  +EPVVL A +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 132 TAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSSGIAVGMATSIPPHNA 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
            EV D  + +I +P   ++ L+  + GPDFPTG V++  T G+  AY TGRGS  +R   
Sbjct: 192 DEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVEAYRTGRGSFRLRARW 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E T     QI+VTEIPY V K+ ++EK+A+L++ K++  + D+ DES  +  R+VIE 
Sbjct: 252 HTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDIDDES-AEDIRIVIEP 310

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           K R   A +++ QL+R T L++   +NM  L+ G  P+   L  +L+ ++  R  V+ RR
Sbjct: 311 KSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQVLQEWLDHRRVVLRRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L +   R  VL GL IA  NLDEV+RIIR    P+ A   L+ R            
Sbjct: 371 SEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPA---LIAR------------ 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++VQ  AIL +RL  L  L   +IR E + L  E +  +++L 
Sbjct: 416 --------------FALTDVQAEAILNMRLRSLRKLEEIEIRAENDRLTTEREGLVELLG 461

Query: 493 SRSRLLGIIKQELLSVKDELD--TP--RRTRIVEGLLDME---DEDCIVREDMVVTVSHL 545
           S       I  E+  +K +    TP  +R  +   L D++   +E  I +E + V +S  
Sbjct: 462 SDEMQWDRISAEIKGIKKQFGKATPLGKRKTVTAALPDIDVAVEEALIDKEPVTVVLSEK 521

Query: 546 GYVKRVPLSVYRAQRRGGKGRSG----VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+++ +            KG  G    +  + +D +       T   ++ F++ G  Y  
Sbjct: 522 GWIRAL------------KGHDGDLAKLTFKTDDVLKVAIKAQTTDKIVLFATNGKFYTL 569

Query: 602 KVWRLPIGSPQA 613
           +   LP G  Q 
Sbjct: 570 EASELPGGRGQG 581


>gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15]
          Length = 752

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 391/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASEHKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 SLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|313678723|ref|YP_004056463.1| DNA topoisomerase IV subunit A [Mycoplasma bovis PG45]
 gi|312950625|gb|ADR25220.1| DNA topoisomerase IV, A subunit [Mycoplasma bovis PG45]
          Length = 861

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/719 (32%), Positives = 391/719 (54%), Gaps = 40/719 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  VI  RA+PD+RDGLKPV RRIL+ M  +G++ NK + K AR+ G+V+GKYHPHG++
Sbjct: 32  YSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQHNKPFKKSARVVGDVIGKYHPHGDS 91

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM Q+W +   L+E  GN GS+D DP AA RYTE RL + A +++ D+ K+TV
Sbjct: 92  SIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEARLSEIADYVIGDIKKNTV 151

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F PN+D S +EPVV+    PN+L+NG  GIA G AT +P HNL E++D  +A I NP I
Sbjct: 152 KFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKIKNPAI 211

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +L  + +II+GPDFPTG VI G  GI  A+  G+G I +    ++  +    + I +TEI
Sbjct: 212 ELSKIAKIIQGPDFPTGGVIYGTDGIHEAFERGKGRITLASRYNV-YSDNKYKYIEITEI 270

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY V K+ ++ +I  +V  + +  + +++D++DR G  ++I L +  + +VI+N L+  T
Sbjct: 271 PYGVVKSKLVHEIDLIVDSEEVAGLIEVKDQTDRNGINILITLDKNVNENVIVNYLFLKT 330

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            ++  ++ N V ++ + P+   +  +L A++   ++V V+  ++ L K + R  +++G  
Sbjct: 331 QMRIYYNYNNVVIDNHTPKTMGISALLDAYLKHVKDVKVKTIEFDLIKYKTRLEIVIGFL 390

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
                 D+V+ +IR S N +               I +L+   D   +T+          
Sbjct: 391 KVAKITDKVIEVIRKSENSKQGV------------IDNLMSAFD---FTLN--------- 426

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI ELRL +L+         E   L  +IK+C  +L++       +      +K +
Sbjct: 427 -QATAIAELRLYKLSKTDEHTFILEKQELEEKIKQCELLLTNPDEFNNYLVSLFRDLKHK 485

Query: 512 LDTPRRTRI-VEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RRT I +E +   +  ED +  E++ + +S  GY+K+V    Y +      G    
Sbjct: 486 FGRIRRTSIEIEQINSSVNQEDLVKDEEVFLGISKFGYIKKVSKKTYESNLITTYG---- 541

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            ++++D +    + S+   +L F++LG      V+++     +  G  L + + L+ GE 
Sbjct: 542 -IKEDDNILFYDLASSLDKLLLFTNLGNYAYLPVFKVNESKWKEFGIHLSDFVDLSSGEE 600

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I +++   + + +    YV   TK G  ++  L DF  ++R  K  +AMKL + DE++S 
Sbjct: 601 IVSVIKVSDFDVTN---YVCMFTKKGQGKKVLLKDF-DVSRFSKTFMAMKLKNDDELISA 656

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +      D+LL TK      +  + + ++ G  S G +   LA GD+++S  +V   D+
Sbjct: 657 KLSNGLKDVLLITKNNFASLYSENDVPIY-GLKSNGNKACYLASGDELVSFTVVKPNDS 714



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 24/217 (11%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR---GISLAKGDQVISM 738
           D IL  +  +  + +LL T LG     P+  +     +   G+     + L+ G++++S+
Sbjct: 546 DNILFYDLASSLDKLLLFTNLGNYAYLPVFKVNESKWK-EFGIHLSDFVDLSSGEEIVSV 604

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGD--------TEEITSLKNDSSVEGNISEERC 790
             V  +D D    +C        ++++  D        T     LKND  +   IS +  
Sbjct: 605 IKV--SDFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFMAMKLKNDDEL---ISAKLS 659

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             LK     +L +++  F    S  D  I      G +A  ++  +E+ +   V P   N
Sbjct: 660 NGLKD----VLLITKNNFASLYSENDVPIYGLKSNGNKACYLASGDELVSFTVVKP---N 712

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           D + LVS    +  + V+EI   S+  KGV IFS  +
Sbjct: 713 DSVALVSQSNKIRLINVSEISTVSKQNKGVPIFSKGR 749


>gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278]
 gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278]
          Length = 750

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/645 (36%), Positives = 357/645 (55%), Gaps = 54/645 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V++ D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKSLIPPEPAE---IHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  ++  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +V+TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRVRAKWKQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+VIE K +     +++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRLVIEPKSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +  +R  +L G  IA  N+DEV+RIIR    P+     L
Sbjct: 357 LREWLDHLRDVLLRRSNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPV---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                          T  L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 414 MK--------------------------TFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIV---EGLLDMED 529
            +L  E+K   ++L S       + +++ +V+D     TP   RRT      E  L   +
Sbjct: 448 KNLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKRRTNFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G+V+ +   V           S +  + +D +   F     + V
Sbjct: 508 EAFIEREPVTVVVSEKGWVRTLKGHVADL--------SNLQFKTDDQLGQSFFAENTSKV 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           L F++ G  Y   V +LP G  +  G+ +   + L+Q   I ++ 
Sbjct: 560 LLFATNGKFYSLDVGKLPGG--RGHGEPIRMFIDLDQDASIVSMF 602


>gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061]
 gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 750

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/735 (34%), Positives = 391/735 (53%), Gaps = 74/735 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSSSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN  EV    +
Sbjct: 138 SELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNAREVASALI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A++D P++ LD  ME I+GPD+PT A +I  +  I+  Y  GRGS+ +R +      S +
Sbjct: 198 AMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDIRKIYKNGRGSVRMRAI-----WSKE 252

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +++T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    DV
Sbjct: 253 EGNVIITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENPTRLVIVPRTNRVDV 312

Query: 323 --ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  + V  NM+ L+  +P    L+ IL  ++ +R E V  R  + L 
Sbjct: 313 EQVMNHLFATTDLERSYRVNLNMIGLDN-RPAVKGLVEILSEWLVYRRETVRNRLNHRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL  A  N+DEV+ +IR    P+     LMQR                  
Sbjct: 372 KVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPKPV---LMQR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  A+LEL+L  L  L    IR E + L  E  +   IL S  +L 
Sbjct: 411 --------FGLTETQAEAVLELKLRHLAKLEEVKIRGEQDELSKERDKLQSILGSERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+E+++  +     RR+ + E +    M D D +  E + V +S +G+V        
Sbjct: 463 TLLKKEIIADAESYGDDRRSPLKERIEAKAMSDHDILPSEPITVVMSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     +G+  +  D         ++  V+F  + G  Y      LP  S +
Sbjct: 515 ----RSAKGHEIDPAGLNYKSGDSFRSAVRGKSNQPVVFIDTTGRSYSVDPLDLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+L  G  +  ++   E++        + A+  G       SD I  NR+G
Sbjct: 569 GQGEPLTGKLALPAGALVEHLLMAKEEQK------FLMASDAGYGFICTFSDLIAKNRAG 622

Query: 673 KIAMKLDSRDEIL-SVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGI 727
           K  + L    +++  +E   +++++LL  TK G+ + FP+S +   +   G   V +   
Sbjct: 623 KALITLPENAKVMEPLEINNEQDEMLLAITKAGRMLMFPVSDLPQLSKGKGNKIVSIPAA 682

Query: 728 SLAKGDQVISMAIVL 742
               G+  +S  +VL
Sbjct: 683 QAVSGEDTLSWLLVL 697


>gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
 gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
          Length = 752

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/740 (34%), Positives = 388/740 (52%), Gaps = 85/740 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 GELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L+EI++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVVVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     ++E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGITETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLNYKAGDSYKSDVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRRNKLSDFI 666
           ARG          QGE +T  +  P   +  + L       ++ A+  G       +D +
Sbjct: 563 ARG----------QGEPLTGKLTLPPGATVEHMLMEADERKLLMASDAGYGFVCTFNDLV 612

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSV 722
             NR+GK  + L     ++       E+D+LL  T+ G+ + FP+S +   +   G   +
Sbjct: 613 ARNRAGKALITLPENAHVMPPVVIDDESDMLLAITQAGRMLMFPVSDLPQLSKGKGNKII 672

Query: 723 GVRGISLAKGDQVISMAIVL 742
            +      KG+  ++   VL
Sbjct: 673 NIPSAEALKGEDGLAHLYVL 692


>gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G]
          Length = 752

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++ SV+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQSVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 752

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/729 (34%), Positives = 388/729 (53%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +             +S 
Sbjct: 617 AGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDL-----------PQLSK 665

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 666 GKGNKIISI 674


>gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 752

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKGD  ++   VL
Sbjct: 677 AEAAKGDDGLAHLYVL 692


>gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894]
          Length = 756

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 255/751 (33%), Positives = 393/751 (52%), Gaps = 85/751 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV    V++ID+P   LD L++I++GPD+PT A +I  R  I+  Y +GRGS+ +R
Sbjct: 187 HNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  +     +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWKKEDGA-----VVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR +
Sbjct: 302 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPV---LMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL+S  ++  ++K+E+ +  D     RR+ +   E    M + D +  E + + +S +
Sbjct: 452 QGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDAKALSYKAGDGWLSSVKGKSNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHG 655
                P+  P ARG          QGE IT  +  P      + L       ++ A+  G
Sbjct: 560 D----PVSLPSARG----------QGEPITGKLTLPPGAVVEHMLMTGEEQKLLMASDAG 605

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIR 714
                  +D I  NR+GK  + L     +L       ++D+LL  T  G+ + FP++ + 
Sbjct: 606 YGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLP 665

Query: 715 VFA---GRNSVGVRGISLAKGDQVISMAIVL 742
             +   G   + +     AKGD  ++   +L
Sbjct: 666 QLSKGKGNKIISIPSADAAKGDDKLAYLTIL 696


>gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
 gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
          Length = 761

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMARF------ 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            DL DL                   Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 413 -DLTDL-------------------QADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
 gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
          Length = 761

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 262/742 (35%), Positives = 405/742 (54%), Gaps = 66/742 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMARF------ 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            DL DL                   Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 413 -DLTDL-------------------QADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHS 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVL 742
           +  I  AK    ++V+S  +VL
Sbjct: 677 IINIPAAKAKTREEVLSNLMVL 698


>gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355]
          Length = 757

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/743 (34%), Positives = 396/743 (53%), Gaps = 81/743 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   ELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID+P   LDAL+EI++GPDFPT A +I  R  I+  Y  GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+  R V   +K  G   ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRQRAV--WKKEDG---EVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  +  ++NM+ L+  +P    L+ IL  ++
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDN-RPAVKNLLEILSEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R  
Sbjct: 356 VFRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR-- 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +SE Q  AILEL+L  L  L    IR E + L  
Sbjct: 411 ------------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQSELEK 446

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVV 540
           E  +   IL+S  ++  ++K+EL +  +     RR+  R  E    + + + +  E + +
Sbjct: 447 ERDQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPSEPVTI 506

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D         ++  V F  S G
Sbjct: 507 VLSQMGWV------------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTG 554

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      LP  S + +G+ L   L+   G  +  ++  PE++       ++ A+  G 
Sbjct: 555 RSYTLDPTSLP--SARGQGEPLTGKLTPPPGAVMEQVLMEPEEQR------LLMASDAGY 606

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRV 715
                 +D I  NR+GK  + L     +++      E+D+LL  T+ G+ + FP+  +  
Sbjct: 607 GFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGEL-- 664

Query: 716 FAGRNSVGVRGISLAKGDQVISM 738
                      +S  KG+++IS+
Sbjct: 665 ---------PQMSKGKGNKIISI 678


>gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
 gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
          Length = 752

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 390/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++ SV+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKVAVKGKSNQSVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 752

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV +  +
Sbjct: 134 GELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVANAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V + E  +  
Sbjct: 194 TLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWNKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLTFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDKLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D    E + + +S  G+V        
Sbjct: 459 TLLKKELQADADAFGDDRRSPLHEREEARAMNEHDMQPSEPVTIVLSQSGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKAGDSFKAAVKGKSNQPVAFIDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFICTFNDLVSRNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       ++D+LL  T  G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALISLPDNAHVMPPLVIENDSDMLLAITAAGRMLMFPVSDLPALSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              AKG+  ++   +L
Sbjct: 677 AEAAKGEDGLAHLFIL 692


>gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
 gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
          Length = 750

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/644 (36%), Positives = 358/644 (55%), Gaps = 58/644 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D     G  ++++ D ++  YL+YA+  I+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MGQEVIGQD-----GPETINLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ N+ + KCAR+ G+VMGKYHPHG+AAIYDAL R+AQD+S+R  +++GQGNFG++
Sbjct: 56  RLLKLDPNQGFKKCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNI 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  +LD L ++ VDFR  YDG   EPVVL   +PN+L NG  
Sbjct: 116 DGDSAAAMRYTEARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGST 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I  PD +++ L+E I+GPDFPTG  I+   G I  
Sbjct: 176 GIAVGMATSIPPHNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILE 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R   H E+       IVVTEIPY V K+ ++EKIAEL+  +++  + D+
Sbjct: 236 AYKTGRGSFRTRAKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDI 295

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   +    ++++  L++ T L++ FS+NM  L+ G  P+  +L  +L
Sbjct: 296 RDESAEDVRVVLVPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVL 355

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  ++EV+VRR+ + L++   R  VL G  +A  N+DEV+RIIR   + + +     
Sbjct: 356 QEWLEHQKEVLVRRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDDAKAS----- 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                      LI   D             L+EVQ  AIL +RL  L  L   +I+ E +
Sbjct: 411 -----------LIKAFD-------------LTEVQAEAILNMRLRSLRKLEEFEIKKEHD 446

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED---- 529
            L  E      +L+S  +    + +++  +            RRT    G  D  D    
Sbjct: 447 KLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGPETEIGARRTDF--GTADDRDLEEI 504

Query: 530 -EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            +  I +E + V +S  G+++ +   V           + +  +  D +   F   T + 
Sbjct: 505 NQAMIEKEPITVVISEKGWIRTLKGHVQDV--------TNLAFKQGDQLHLSFHAETTSK 556

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           +L F+S G  Y     +LP G  +  G+ +  +L +++ + I +
Sbjct: 557 ILIFTSGGKFYTLGADKLPGG--RGHGEPIRLMLDMDETQEIIS 598


>gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB0_50A10]
          Length = 753

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 242/721 (33%), Positives = 401/721 (55%), Gaps = 72/721 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+    S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   K
Sbjct: 2   KEQDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSK 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA 
Sbjct: 62  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAM 120

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  L+ +L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT
Sbjct: 121 RYTESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMAT 180

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
           +IP+HN+ EV+D  +  ++NP  +L  L +II+GPDF   A I+     +   Y+TGRG 
Sbjct: 181 DIPSHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGG 240

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              +  +H    + ++ +I++  +PYQ + + +LE+IA+ + +K+I  + DL DE D ++
Sbjct: 241 --FKAQAH---WTQEKNEIIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKE 295

Query: 307 GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVA 363
             R+VI LK    +A  ++N L+  T LQ  +  NM  ++L G  P+ FTL+ ++K ++ 
Sbjct: 296 PVRLVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKG-GPKVFTLVELIKEWLV 354

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P   ++E+++    
Sbjct: 355 FRKNTVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEP---KKEIIK---- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS++Q  AILE+RL +L  L +  +  E ++L  E
Sbjct: 408 ----------------------AFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLLEE 445

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
             +   IL S++RL  +IK ELL +KDE    R++ I E        +E+ +V E + V 
Sbjct: 446 QNKIEKILGSKTRLKTLIKNELLEIKDEFGEDRKSPIKESSEAKVFSEEETLVTESITVV 505

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +S  G++            R  KG     S +  R ED + D     ++   +F  S G 
Sbjct: 506 LSEAGWI------------RSAKGHEIDPSSLSYRGEDKLQDFCRGKSNQLSVFLDSNGK 553

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK-HGN 656
            Y    + LP  S +  G  +   +S + G +  + +   +D+      Y++  T  +G 
Sbjct: 554 AYSLPSYSLP--SARGMGDPISGRVSADSGVKFISTLIGNDDDK-----YMIMNTAGYGY 606

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRV 715
           +  ++  + +   +SGK  MKL +  ++L      +++  I   + +G+ + F I+ + V
Sbjct: 607 I--SEFKNMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIGRLLIFEINELPV 664

Query: 716 F 716
            
Sbjct: 665 L 665


>gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88]
 gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a]
 gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
 gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88]
 gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a]
 gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82]
 gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034]
 gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146]
 gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3]
 gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3]
 gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327]
 gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1]
 gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
          Length = 752

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 391/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
 gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
          Length = 761

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMARF------ 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            DL DL                   Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 413 -DLTDL-------------------QADAILDTKLRHLAKLEEMKIRGEQDELERERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536]
 gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
 gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536]
 gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042]
 gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972]
 gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1]
 gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86]
 gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
          Length = 752

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 391/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341]
 gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341]
          Length = 761

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 257/746 (34%), Positives = 407/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV +  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  ++ FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWITFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+++Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FNLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++        A+     G+S      ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIR-------HAKGHDVDGQSLSYKAGDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/642 (35%), Positives = 348/642 (54%), Gaps = 49/642 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+ G  P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P    + +M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEP----KPVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W         DL D+                Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARW---------DLTDN----------------QVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +LSS  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPETDEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTAALTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             ++ G  +     +LP G  +  G+ L  I+ ++  + + T
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIIVDMDNDQAVLT 603


>gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 743

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 385/717 (53%), Gaps = 76/717 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KCA
Sbjct: 9   IEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ +  D+VDFRP YDG  QEPVVL A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 129 TEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSIPPHNV 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           GE+    + +I +PD  +  LME + GPDFPTG +I+  RT +  AY TGRGS+ IR   
Sbjct: 189 GEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMRIRARW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+      Q+VVTEIPYQV K+ ++E+IA+L+ +K++  + D+RDES     R+V+E 
Sbjct: 249 SVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTD-IRLVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K RG   +V++  L+R T+L+S F++NM  L   + P   +L  +L+A++  R +V+ RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHDVLQRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR                           
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIR--------------------------- 400

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             ++     G   T  L+E+Q  +IL +RL  L  L   +IR E  +L  E  +   +L 
Sbjct: 401 --EEDDAKAGLMATFSLTELQAESILNMRLRSLRRLEELEIRKEHAALTAERGDLTALLG 458

Query: 493 SRSRLLGIIKQELLSV------------KDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           S       I +E+ ++            + EL  P R       +++   + + RE + +
Sbjct: 459 SEPLRWKKITEEVKAIRKAFGAGALGTRRSELAAPPRA------IELSAIEAVEREPLTL 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+VK +         +  K   G  +  E   TD   V        F++ G  + 
Sbjct: 513 ILSAKGWVKTLKGHGIDPTAQKFKEGDGFRLAVECQSTDRLCV--------FATDGRAFT 564

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP G  +  G+ +  ++ L+  E +  + P  E         +  +   G V R+
Sbjct: 565 LRAADLPRG--RGDGQPIRLLIELSNDEDLVAVFPVREG----TRHLLASSAGRGLVIRD 618

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVR---FPISAI 713
           +  D +   R+GK  + L   +   S   C   E D ++   LGQ  R   FP++ +
Sbjct: 619 E--DLVAEKRTGKQVLNLKDAE---SARICLPVEGDHVVV--LGQNRRMLVFPVAQL 668


>gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMARF------ 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            DL DL                   Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 413 -DLTDL-------------------QADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKANSREEVLSNLMVLPQGA 702


>gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont]
          Length = 757

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/740 (34%), Positives = 392/740 (52%), Gaps = 81/740 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV +  V +ID P+  LD L+EI++GPDFPT A +I  R  I+  Y  GRGSI 
Sbjct: 185 PPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSIR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            R V   +K  G   ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   
Sbjct: 245 QRAV--WKKEDG---EVVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHENPT 299

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFR 365
             V++        D ++N L+  T LQ  + V  NM+ L+  +P    L+ IL  ++ +R
Sbjct: 300 RLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDN-RPAVKNLLEILSEWLVYR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR  + L +   R H+L GL +A  N+DEV+ IIR    P+     LM R     
Sbjct: 359 RDTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMSR----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +SE Q  AILEL+L  L  L    IR E   L  E  
Sbjct: 411 ---------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQAELEKERD 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           +   IL+S  ++  ++K+ELL+     D  RR+ +   E    + + + +  E + + +S
Sbjct: 450 QLQAILASDRKMSNLLKKELLADSQTYDDDRRSPLHEREEAKALSENELVSAEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +G+V            R  KG     +G+  +  D         ++  V F  S G  Y
Sbjct: 510 QMGWV------------RSAKGHDIDPAGLSYKAGDSYRAAARGKSNQPVAFIDSTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G    
Sbjct: 558 TLDPTSLP--SARGQGEPLTGKLTPPPGAVIEQVLMEADDQK------LLMASDAGYGFI 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAG 718
              +D +  NR+GK  + L    E+++       +D+LL  T+ G+ + FP++       
Sbjct: 610 CTFADLVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAITQAGRMLMFPVA------- 662

Query: 719 RNSVGVRGISLAKGDQVISM 738
                +  +S  KG+++IS+
Sbjct: 663 ----DLPQMSKGKGNKIISI 678


>gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103]
 gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103]
          Length = 771

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 254/743 (34%), Positives = 396/743 (53%), Gaps = 81/743 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 17  ELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATA 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 77  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 135

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 136 MRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 195

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID+P   LDAL+EI++GPDFPT A +I  R  I+  Y  GRG
Sbjct: 196 TDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 255

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+  R V   +K  G   ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 256 SVRQRAV--WKKEDG---EVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 310

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  ++N L+  T L+  +  ++NM+ L+  +P    L+ IL  ++
Sbjct: 311 NPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDN-RPAVKNLLEILSEWL 369

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R  
Sbjct: 370 VFRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR-- 424

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +SE Q  AILEL+L  L  L    IR E + L  
Sbjct: 425 ------------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQSELEK 460

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVV 540
           E  +   IL+S  ++  ++K+EL +  +     RR+  R  E    + + + +  E + +
Sbjct: 461 ERDQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPSEPVTI 520

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +S +G+V            R  KG     +G+  +  D         ++  V F  S G
Sbjct: 521 VLSQMGWV------------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTG 568

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      LP  S + +G+ L   L+   G  +  ++  PE++       ++ A+  G 
Sbjct: 569 RSYTLDPTSLP--SARGQGEPLTGKLTPPPGAVMEQVLMEPEEQR------LLMASDAGY 620

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRV 715
                 +D I  NR+GK  + L     +++      E+D+LL  T+ G+ + FP+  +  
Sbjct: 621 GFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGEL-- 678

Query: 716 FAGRNSVGVRGISLAKGDQVISM 738
                      +S  KG+++IS+
Sbjct: 679 ---------PQMSKGKGNKIISI 692


>gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
 gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
          Length = 761

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 405/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMARF------ 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            DL DL                   Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 413 -DLTDL-------------------QADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007]
          Length = 752

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM
           2831]
 gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 748

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/715 (34%), Positives = 379/715 (53%), Gaps = 60/715 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 12  GIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPTTAHKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 72  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +DTVDFRP+Y+G  +EPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I++P+     L + ++GPDFPTG +++     +  AY TGRG+  +R  
Sbjct: 192 AAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGRGAFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        IVVTEIPY + K  ++EK+AEL++EK++  +AD+RDES  +  R+V+E
Sbjct: 252 WAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDES-AEDVRIVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     +++  L+R T L++   +N+ V + G  P+   L   L+ +V  R  V+ R
Sbjct: 311 PRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVDHRRVVLQR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R           
Sbjct: 371 RSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR----------- 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q  AIL+ RL  L  L   +++ E ++L  E  E   +L
Sbjct: 417 ---------------FELTEIQANAILDTRLRSLRKLEEMELKREFDALTAEKAEIDALL 461

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
           +S       I+ ++ +VK     E    RR   +    D+   D     + RE + V VS
Sbjct: 462 ASEPAQWKAIQAQIRAVKKTFGPETKLGRRRTTLASPPDVGGIDFTAALVEREPITVIVS 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      SGV  + +D +   F   T   +L  ++ G V+  + 
Sbjct: 522 TKGWI--------RALKGHVADLSGVAFKGDDTLKIAFPTETTQKILLLATNGKVFTLEA 573

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKL 662
            +LP G  +  G  +  +  L+ G  I   +P+ PE +       ++ A   G       
Sbjct: 574 SKLPGG--RGFGDPVRLMADLDDGTEIVAALPYRPETK-------LLIAGSDGRGFVAPA 624

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
              +   R GK  + LD  D   +V      + + +       + FP+S +   A
Sbjct: 625 DALVANTRKGKNVLGLDG-DATAAVLVPADGDHVAVVNTEKLLLIFPVSEVAELA 678


>gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
 gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
          Length = 752

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 252/738 (34%), Positives = 391/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPIRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+    +LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKP---KLMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     ++E Q  AILEL+L  L  L    IR E N L  E  +   IL+S  ++ 
Sbjct: 407 --------FGITETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQSILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|254417301|ref|ZP_05031045.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175954|gb|EDX70974.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 748

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 260/772 (33%), Positives = 402/772 (52%), Gaps = 102/772 (13%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYD 158
           M Q++S R  L+ G GNFGSVD DPPAA RYTE RL   +H  LL ++G+ TVDF  N+D
Sbjct: 1   MVQEFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPISHEALLSEIGEATVDFIDNFD 60

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS QEPVVL A+ P +L+NG  GIAVGMATNIP HNLGE+VDG +A+ID PD+  + L +
Sbjct: 61  GSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGEIVDGLIALIDRPDLADEKLWK 120

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ------IVVTEIP 272
           +I GPDFPTG  I+  +GI++AY++GRG I +RG++ +E+    R +      ++VTE+P
Sbjct: 121 LIPGPDFPTGGEIIDTSGIRDAYSSGRGIIPVRGIAKVEEIQVGRTRRHRRTALIVTELP 180

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKAA +EKIA+LV   R+  IADLRDESDR+G RVV+ELKR A    +L  LY+ T 
Sbjct: 181 YQVNKAAWIEKIADLVNHGRLDGIADLRDESDRRGMRVVVELKRDAHPRDVLKHLYKQTP 240

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS F   M+AL   +P +  L   L+ F+ FRE+ + R+  Y L++ R R H++ GL +
Sbjct: 241 LQSNFGAIMLALVNGQPRQLALRQCLEEFLRFREQTLTRQYTYELDQKRQRRHLVEGLLV 300

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            +  L  V+ I+  +P+  TA+ +  ++                          + LSE 
Sbjct: 301 CLNQLTRVIEILTNAPDGTTAKTQFQEQ--------------------------LNLSES 334

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL + + RLTGL R  ++ E   L   I+   ++LSSR  LL  +K+EL S+K + 
Sbjct: 335 QADAILAMPMRRLTGLERQKLQTEFEELTARIETLQELLSSRHELLKTLKKELRSLKRKY 394

Query: 513 DTPRRTRI--VEGLLDMEDEDCIVR----------------------------EDMVVTV 542
             PRRT+I   + L + +      +                            E  V+  
Sbjct: 395 ADPRRTKIRSAQSLKEPKQPKSEKQTRKKAKTSDTPKTSASKSPSPNLIETEAEQTVLEF 454

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++ G+V+R+        R     +S   ++D  DFV      +T +     +S G  Y  
Sbjct: 455 TYQGHVQRL--------RSAPDPKSKPSIKDGNDFVIQTQQTTTASEFATLTSGGKAYPL 506

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV  +P  + + +G  +  +L  +  +  T I  F   E +  ++ ++  T+ G V+R  
Sbjct: 507 KVQDIPPAAGRKQGIPVTRLLP-DAAQSETVIAHFRPHELT-ESVSLILLTQQGRVKRLP 564

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRN 720
            ++ + +   G   +KL   D +  V      +D+++ T  G+ +RF I+   +   GR 
Sbjct: 565 ATELLNLTARGLTTVKLKEEDVLAYVTLAQSTDDLIIATSNGRLLRFEINDQNLPIMGRT 624

Query: 721 SVGVRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGD----- 768
           + G + + L + +Q++          ++L ++  Y +RI     +   RR+  GD     
Sbjct: 625 AQGNQALRLRRREQLVGCVAIAPNENLLLVSEQGYGKRIG----LGVVRRIKRGDLGTQA 680

Query: 769 ------TEEITSLKNDSSVEGNI---SEERCQELKLKEQFILTVSEKGFGKR 811
                 T+ +  + N S  E  +   S+ER   + LK   +L   + G G R
Sbjct: 681 LQFKTSTDRLIGVINASQTETAVLLTSDERVMTVSLKSVKLL--GKDGCGDR 730


>gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
 gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
          Length = 758

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 262/749 (34%), Positives = 397/749 (53%), Gaps = 75/749 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA+ID PD  LDAL+  ++GPDFPT A +I  R  I+  Y +GRGS+ +R
Sbjct: 187 HNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYESGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDESD +    +
Sbjct: 247 AVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTRL 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  +  ++NM+ L+G +P    L  IL  ++AFR +
Sbjct: 302 VLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDG-RPSVKGLREILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+     LM +       
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPV---LMAK------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+E+          RR+ + E      M + D    E + + +S +
Sbjct: 452 QALLASERKMNSLLKKEIQEDAKAYGDERRSPLHERGEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+L  G  I  ++       + +N  ++ A+  G      
Sbjct: 560 DPLTLP--SARGQGEPLTGKLTLPPGATIEQVL------MAADNQRLLLASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA--- 717
            +D +  NR GK  + L     +L      +++D+LLT T  G+ + FP++ +   +   
Sbjct: 612 FADLVARNRVGKAVLTLPDNAHVLPPLELQRDDDLLLTVTAAGRMLLFPVADLPELSKGK 671

Query: 718 GRNSVGVRGISLAKGDQVI--SMAIVLHA 744
           G   V +    LA GD  I   +AI  H+
Sbjct: 672 GNKIVSIPAAQLASGDDRILWLLAIAPHS 700


>gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
 gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
          Length = 752

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 AQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 770

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 260/748 (34%), Positives = 408/748 (54%), Gaps = 85/748 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D+ EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPDDGEEH-IERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD---------------------IDLDALMEI 219
           GIAVGMATNIP HN+ E+    + +I++PD                      D  AL++ 
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLKC 239

Query: 220 -IRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQ--IVVTEIPYQV 275
            +RGPDFPTG +++   G I  AY TGRG+  +R  +  EK  G+R    IVVTEIPYQV
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVR--ARWEKEEGNRGTWVIVVTEIPYQV 297

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQ 334
            K+ ++EKIAEL+  K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+
Sbjct: 298 QKSRLIEKIAELLLAKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELE 356

Query: 335 SLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S  S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA
Sbjct: 357 SRVSLNMNVLSHGKVPNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIA 416

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             NLDEV+RIIR    P   +++LM+                          T  L++VQ
Sbjct: 417 YLNLDEVIRIIREEDEP---KQDLMR--------------------------TFELTDVQ 447

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             +IL +RL  L  L   +IR E + L +E  +   +L+S +R    I  E+ SV+++  
Sbjct: 448 AESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQWKKISAEIKSVREKFG 507

Query: 514 T-----PRRTRIVEGLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
                  RRT   +    D+ED  +  I RE + + VS  G++        RA +     
Sbjct: 508 PKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLAD 559

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
            S +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ + 
Sbjct: 560 FSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDME 617

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             + I T   F  D ++     ++  +  GN      S+ +   R GK  M + + DE  
Sbjct: 618 NDQDILTA--FVHDPAA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAI 713
             +  + ++ I +  +  + V FP+S I
Sbjct: 672 LCQRVSGDH-IAVVGENRKMVVFPLSDI 698


>gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
 gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
          Length = 752

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIKDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/727 (34%), Positives = 388/727 (53%), Gaps = 81/727 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y +GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPTVKGLVEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQR                  
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+L+        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEILADAAAYGDDRRSPLTEREEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLSYKAGDSFRAAACGKSNQPVVFMDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+L  G  I  ++   +D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTLPPGANIEHVLMAADDQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    + L        +D+LL+ T  G+ + FP++ +             +S  K
Sbjct: 623 KTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADL-----------PELSKGK 671

Query: 732 GDQVISM 738
           G++++S+
Sbjct: 672 GNKIVSI 678


>gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b]
 gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b]
          Length = 756

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/742 (33%), Positives = 395/742 (53%), Gaps = 85/742 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ EV    + +I+ P+  LD L++I+ GPDFPT A +I  R  I+  Y  GRGSI 
Sbjct: 185 PPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRGSIR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            R V   +K  G   ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   
Sbjct: 245 QRAV--WKKEDG---EVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHENPT 299

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFR 365
            ++ + R    D+  ++N L+  T L+  + V  NM+ L+  +P    L+ I+  ++ +R
Sbjct: 300 RLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDN-RPAVKNLLEIISEWLVYR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R     
Sbjct: 359 RDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKAV---LMSR----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +SE Q  AILEL+L  L  L    IR E   L  E  
Sbjct: 411 ---------------------FEISETQAEAILELKLRHLAKLEEMKIRGEQAELEKERD 449

Query: 486 ECLDILSSRSRLLGIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           +   IL+S  ++  ++K+EL     +  D+  +P R R  E    + + D +  E + + 
Sbjct: 450 QLQAILASDRKMSNLLKKELQADSQTYGDDRRSPLRER--EEAKALSETDLVSAEPVTIV 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +S +G+V            R  KG     +G+  +  D         ++  V F  S G 
Sbjct: 508 LSQMGWV------------RSAKGHDIDPAGLSYKAGDNYLAAARGKSNQPVAFIDSTGR 555

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP  S + +G+ L   L+L  G  +  ++  P+++       ++ A+  G  
Sbjct: 556 SYTLDPTSLP--SARGQGEPLTGKLTLPPGAVMEQVLMEPDEQK------LLMASDAGYG 607

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVF 716
                +D +  NRSGK  + L    ++++      E+D+LL  T+ G+ + FP+  +   
Sbjct: 608 FICTFADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAITQAGRMLMFPVGEL--- 664

Query: 717 AGRNSVGVRGISLAKGDQVISM 738
                     +S  KG+++IS+
Sbjct: 665 --------PQMSKGKGNKIISI 678


>gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357]
          Length = 749

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 12  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 71

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 72  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 130

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 131 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 190

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 191 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 248

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 249 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 305

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 306 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 365 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 404 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 455

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 456 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 507

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 508 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 559

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 560 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 613

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 614 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 673

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 674 AEAARGEDGLAQLYVL 689


>gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
 gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
          Length = 752

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
 gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
          Length = 752

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 390/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586]
 gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586]
          Length = 761

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 258/746 (34%), Positives = 407/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV +  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S+  +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSSQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
 gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
          Length = 761

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 259/746 (34%), Positives = 406/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV +  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
 gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
          Length = 748

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 250/748 (33%), Positives = 401/748 (53%), Gaps = 76/748 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++ +++GPD+PT A +I  +  I   Y  GRGSI +
Sbjct: 187 PHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E+      +IV++ +P+Q + + ++E++A  +R K++  + D+RDESD +   R
Sbjct: 247 RAVWKKEEG-----EIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           +VI  +      D +++ L+  T L+  + V  NM+ L+G KP    L+ IL  +++FR 
Sbjct: 302 IVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLLTILNEWLSFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR   N +  + ELM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIR---NEDEPKAELMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ  AIL LRL  L  L    ++ E + L  E  E
Sbjct: 412 --------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYK 600
            G+V            R  KG    V        D ++      ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGNVRR 659
                LP  S +++G+ L   ++L +G  +  + M  PE +       V+ A+  G    
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPEGAVVQQVLMASPETK-------VLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
              +D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +
Sbjct: 611 CTFADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLS 670

Query: 718 ---GRNSVGVRGISLAKGDQVISMAIVL 742
              G   + +   +   GD+ ++  +V+
Sbjct: 671 KGKGNKIINISAAAAKSGDEYLARLLVI 698


>gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933]
 gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           W3110]
 gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A]
 gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS]
 gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739]
 gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1]
 gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989]
 gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39]
 gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026]
 gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9]
 gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B]
 gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736]
 gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EDL933]
 gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr.
           W3110]
 gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS]
 gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A]
 gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739]
 gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989]
 gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1]
 gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39]
 gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026]
 gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1]
 gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407]
 gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W]
 gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1]
 gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431]
 gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905]
 gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B]
 gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           G5101]
 gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str.
           493-89]
 gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H
           2687]
 gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010]
 gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68]
 gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180]
 gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11]
 gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509]
 gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125]
 gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74]
 gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9]
          Length = 752

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469]
 gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469]
 gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253]
 gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227]
          Length = 752

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   L+ L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 TLLKKELQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLSYKAGDSYKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   +   L+L  G  I  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPVTGKLTLPPGATIDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E D+LL  T  G+ + FP+S +   +   G   + +  
Sbjct: 617 TGKAMITLPENARVMPPLVIRSETDMLLAITHAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   V+
Sbjct: 677 AEAARGEDGLAHLYVM 692


>gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
 gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
          Length = 761

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 261/746 (34%), Positives = 405/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E  + 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERNKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
          Length = 733

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 245/679 (36%), Positives = 365/679 (53%), Gaps = 52/679 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + D +   YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  M +       KCA
Sbjct: 9   IVDEPLGDALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEAAARKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ GEVMG +HPHG+ AIYDAL RMAQ+++ R  L++GQGNFG++DGD  AA RYTECRL
Sbjct: 69  KVVGEVMGNFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMRYTECRL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +LD + +D VDFRP YD    EPVVL   +PN+L NG  GIAVGMAT++P HN+
Sbjct: 129 TLAAMMILDGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATSVPPHNV 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+VD C  ++ N       LME I GPDFPTG V +  R  I+ AY TGRGS+ +R   
Sbjct: 189 VELVDACRKLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSVRVRARY 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     + +I+V EIPYQV K+ ++E++A+L+  K+   + D+RDESD +  R+V+E 
Sbjct: 249 EVEDAGRGQWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESD-ENIRLVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
           K R    +V++  L++ + L++ F +NM  L+    P    L   L A++  R  V++R 
Sbjct: 308 KSRNIEPEVLMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRRVVLLRM 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L K   R H+L GL IA  NLDEV+RI+R    P   R  LM R            
Sbjct: 368 SNWRLEKIEKRLHLLDGLMIAFLNLDEVIRIVREEDKP---RDMLMSR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL+ RL +L  L    I++E   L  E +  L +L 
Sbjct: 413 --------------FTLSELQADYILDTRLRQLARLEEMVIQDEHKKLSEEREGILALLG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIVREDMVVTVSHLGYVK 549
           S       I Q L+ V+ +L +PRRT   +  + +E    E  + +E + V +S  G+++
Sbjct: 459 SEKMQWKRIDQLLVEVRKKLPSPRRTTYADAPVGIEVAAIESYLPKEAITVILSKRGWIR 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                V        K    +      + TD F++ T T   F +  G        +LP  
Sbjct: 519 AAKGKVEDPSELKFKEGDELSFLVPGYNTDKFLILT-TDGRFLTLSGD-------KLP-- 568

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S +  G+ L  +L + +  +I T+  +    ++     +V    +G V   +  D +   
Sbjct: 569 SARGHGEPLRLMLDIEESAKIVTVFAY----TAGAKRVMVAKNGYGFVMNEE--DAVANK 622

Query: 670 RSGKIAMKLDSRDEILSVE 688
           R+GK  M +D  + + +++
Sbjct: 623 RAGKQTMTVDGTEAMAALQ 641


>gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 752

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/729 (34%), Positives = 388/729 (53%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L     ++       E+++LL  T  G+ + FP+S +             +S 
Sbjct: 617 AGKALITLPDNAHVMPPLVIEDESNMLLAITAAGRMLMFPVSDL-----------PQLSK 665

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 666 GKGNKIISI 674


>gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV
           subunit A and topoisomerase IV [Escherichia coli
           BL21(DE3)]
 gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)]
          Length = 752

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22]
 gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
 gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22]
 gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
          Length = 752

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/729 (34%), Positives = 386/729 (52%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D    E + + +S +G+V        
Sbjct: 459 NLLKKELQADADAFGDERRSPLHEREEAKAMSEHDMQPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D        ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMESDDRK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +             +S 
Sbjct: 617 AGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDL-----------PQLSK 665

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 666 GKGNKIISI 674


>gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v]
          Length = 752

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 KLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|269115286|ref|YP_003303049.1| Topoisomerase IV subunit A [Mycoplasma hominis]
 gi|117582117|gb|AAC33842.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322911|emb|CAX37646.1| Topoisomerase IV subunit A [Mycoplasma hominis ATCC 23114]
          Length = 933

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/734 (33%), Positives = 395/734 (53%), Gaps = 62/734 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  + I   ++ D M + +  Y+  +I  RAIPD RDGLKPV RRIL+ M  + ++ ++
Sbjct: 10  QEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNSE 69

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+G+YHPHG+++IY+AL RMAQDW     LIE  GN GS+D DP AA R
Sbjct: 70  PFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPAAAMR 129

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K +  +L DL +  V   PN+D S  EP+VL A +PN+LVNG  GIA G AT 
Sbjct: 130 YTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATE 189

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  +A+I NP I ++ L EI++GPDFPTGA+I G   IK A ++G+G I 
Sbjct: 190 IPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKALSSGQGRIT 249

Query: 250 IRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           I    H    +K       I + EIP+ V K+ ++  I  +  +K+I  I ++ D++DR 
Sbjct: 250 ISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDRN 309

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G  + I+L+ GA+AD I+  L   T L   +S NMVA++  +P    L   L A+++  +
Sbjct: 310 GISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNRPVILNLYSALIAYLSHLK 369

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANL-DEVVRIIRFSPNPETARRELMQRSWNAS 425
           EV +    Y L K + R  ++ G  I VA + DEV+ +I+ S N +              
Sbjct: 370 EVNINGINYDLKKFKLRLEIVEGF-IKVAEISDEVIHLIKESDNSKKGV----------- 417

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               ++ L++   +          SE+Q  AI ELRL +L+ + + + + E  +L I+I+
Sbjct: 418 ----ILALMNKFKF----------SELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIE 463

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVR-EDMVVTVS 543
            C  +L+ +      + ++LL +K++   PR T I +  +D E D   + + ED  + ++
Sbjct: 464 NCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKNEDFYLYIT 523

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG------- 596
             GY K++ L VY +        S   +++ED V     V++ + +LFF++LG       
Sbjct: 524 KDGYYKKISLKVYTSNE-----LSTFKLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDC 578

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY-VVFATKHG 655
            ++K+  W+         G+ + +I++L   E+I  ++      +S+NN    +  +K G
Sbjct: 579 HLFKDCNWK-------DLGQHISSIVALESSEKIIRVIEI----TSFNNYANFILMSKLG 627

Query: 656 NVRRNKLSDFIQINRSG---KIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             ++  L DF   N+S    K  M   D  DE++  +    E  + +    G       +
Sbjct: 628 YAKKVNLRDF--ENKSSLKTKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSEN 685

Query: 712 AIRVFAGRNSVGVR 725
            ++V     + G+R
Sbjct: 686 ELKVGISLKARGIR 699


>gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
 gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
          Length = 744

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/686 (35%), Positives = 372/686 (54%), Gaps = 56/686 (8%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + ++  E+   I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ 
Sbjct: 1   MTTTSVEDPPPIHDTWLADALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAMRQLR 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           ++    + K AR+ G+VMGK+HPHG+++IYDAL R+AQD+++R  L++GQGNFG++DGD 
Sbjct: 61  LDPGSGFKKSARVVGDVMGKFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDN 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL + A  LLD + +DTVDFR  YDG  +EPVVL + +PN+L NG  GIAV
Sbjct: 121 AAAMRYTEARLTEVAALLLDGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYAT 243
           GMAT+IP HN+ E+      +I +P+   + L+E++ GPD PTG V++  R  +  AY T
Sbjct: 181 GMATSIPPHNVDELCTALQHLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLEAYRT 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS  +R    +E       QIVVTEIPYQV K+ ++E++AEL++ +++  + D+RDES
Sbjct: 241 GRGSFRVRAKWEVEPLKNGTWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDIRDES 300

Query: 304 DRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAF 361
                R+V+E K R    DV++  L+R T L+S  S+N+  L+    P   +L   L+AF
Sbjct: 301 -AMDIRLVLEPKSRNVDPDVLMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREALQAF 359

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R++V+VRRT++ L K   R  VL G  IA  NLDE++RI+R    P+     +M R 
Sbjct: 360 LDHRQDVLVRRTRHRLEKIAHRLEVLGGYLIAYLNLDEIIRIVREEDEPKA----VMMR- 414

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                   T  LS+VQ  AIL +RL  L  L   +IR E  +L 
Sbjct: 415 ------------------------TFELSDVQAEAILNMRLRALRRLEEIEIRKEFENLS 450

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDEDCIV 534
            E  +   +L+  +R    +  +L  ++           RRT I      + +  E  + 
Sbjct: 451 AERDDLTALLNDDARQWRAVSDQLGEIRRGFGKTTEIGRRRTVIGSTPNPVVVPTEALVE 510

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE + V  S  G+++ +   +   Q    K   G   R     TD         +L F++
Sbjct: 511 REPITVICSEKGWIRALKGHIGLDQEVKYKEGDGERFRLHAETTD--------KILVFAT 562

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y     +LP G  +  G+ L  ++ L   E +  I P+     + + L V  +   
Sbjct: 563 DGRFYTIGGDKLPSG--RGHGEPLRLMIDLANDEDVVAIRPY----RTGDRLLVASSEGR 616

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDS 680
           G V    + D +   R+GK  + +DS
Sbjct: 617 GFV--VPVDDVVAQTRAGKQVLVVDS 640


>gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863]
          Length = 752

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFVTTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 KLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 752

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/729 (34%), Positives = 387/729 (53%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  + L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNHRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+     LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPP---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  + G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +             +S 
Sbjct: 617 AGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDL-----------PQLSK 665

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 666 GKGNKIISI 674


>gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31]
 gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31]
          Length = 759

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/718 (34%), Positives = 380/718 (52%), Gaps = 68/718 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++ +   YL YA++ I  RA+PD+RDGLKPVHRR+L  M  M +       KCA
Sbjct: 17  ILDEPLSEALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHAMNNMRLNPEGGARKCA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ GEVMG +HPHG+ +IYDAL R+AQ++S R+ L++GQGNFG++DGD  AA RYTEC++
Sbjct: 77  KVVGEVMGNFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGNIDGDSAAAMRYTECKM 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LLD + +D VDF+P+YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 137 TAAAVLLLDGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNP 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E++D C+ ++  P+     ++E + GPDFPTG VI+  R  +   Y TGRG +  R   
Sbjct: 197 AELIDACLLLLSKPEATTAEILERVPGPDFPTGGVIVESRESLLETYETGRGGVRTRAKW 256

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES  +  R+V+E 
Sbjct: 257 EKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDES-AEDIRLVLEP 315

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
           K +    +V++  L++ ++L+S F VN+  L+    P    +   L AF+A R +V+ RR
Sbjct: 316 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALIAFLAHRRDVLTRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K   R H+L GL IA  NLDEV+RI+R+   P   +++LM              
Sbjct: 376 ARNRLSKIEARLHILDGLLIAYLNLDEVIRIVRYEDEP---KQKLM-------------- 418

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS++Q  AIL  RL +L  L   +IR E   L  E    L +L+
Sbjct: 419 ------------AAFALSDIQADAILNTRLRQLAKLEEMEIRREHAQLVEERDGILAMLA 466

Query: 493 SRSR---LLGI----IKQELLSVKDELDTPRRTRIVEGLLDMED----------EDCIVR 535
           S  +   L+G     ++  LL +K  LD   R   V G    ED          E  IVR
Sbjct: 467 SDKKQWDLVGTGLRQVRAVLLKIKHPLDKTGRATGVIGRSVFEDAPVVDAEAALEALIVR 526

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G++        RA +   +  S +  ++ D +  L    T   +L F+S 
Sbjct: 527 EPITVILSDRGWI--------RAAKGKVEDPSELKFKEGDKLGFLVPAETTDKLLLFTSD 578

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +      LP  S +  G+ +  ++ L+   +I  + PF      +       A+K G
Sbjct: 579 GRFFTIGCANLP--SARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRF------LASKQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
                   + +   ++GK  + +D+      +E    +  + +    G+ + FP+  +
Sbjct: 631 YGFLMPEEEALANRKAGKQVLTVDAAGAAFCLEAVGDQ--LAVVGDNGKILIFPLEEL 686


>gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 750

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 258/751 (34%), Positives = 399/751 (53%), Gaps = 74/751 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+    +++ ++ +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ + KY K
Sbjct: 10  EGLERRPMSEYVEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKASAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYT
Sbjct: 70  SARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ T ++RPN+D +  EP +L AR PNVL+NG  GIAVGMAT+IP
Sbjct: 129 ESKLSKYADALLSELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV  C+ ++DNP  D+  LME I+ PD+PT A +I  +  I+N Y TGRGSI +
Sbjct: 189 PHNLNEVVSACLHMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYETGRGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R + H E   GD   I+VT +P+Q + + +LE+IA  +R K++  + DLRDESD +   R
Sbjct: 249 RAIWHRE--DGD---IIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDESDHENPTR 303

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           +VI  +      D +++ L+    L+  + VN+  + +NG KP    L  I+K ++ FR 
Sbjct: 304 LVITPRSNRVDVDALMDHLFATCDLERSYRVNLNIIGING-KPGVMNLRQIIKDWLLFRT 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V  RR  Y L K   R H+L GL IA  N+DEV+ +IR    P+ A   L+ R      
Sbjct: 363 DVTRRRLSYRLEKVDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPA---LIAR------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q   IL+ +L +L  L    IR E + L  E  E
Sbjct: 414 --------------------FGLSDIQAEYILDTKLRQLARLEEFKIRAEQDELAKEKAE 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL S +RL  ++K+EL +  +E    RR+ +V         ++D +  E + V +S 
Sbjct: 454 LELILGSETRLKTLVKKELKAAAEEFGDERRSPLVARGEASAFNEKDLLTAEPITVVLSD 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G++            RG KG     + +  +  D         ++ +V    S+G  Y 
Sbjct: 514 KGWI------------RGAKGHDIDPTTLSYKSGDKFLSAACGRSNQNVFLQDSVGRFYA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+     L++  G   T ++   +D+       V+  T  G     
Sbjct: 562 LGGHTLP--SARGQGEPATGRLNVASGALFTDVIMGADDQK------VLLGTDAGYGFIG 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
           K+ D    NR+GK  + L    +ILS +     N ++   +  G+ + FPI+ +   A  
Sbjct: 614 KIGDLYTKNRAGKAVVSLPKGAKILSPKMVNDANALIAAVSNEGRLLVFPIAELPELARG 673

Query: 718 -GRNSVGVRGISL-AKGDQVISMAIVLHADA 746
            G   + + G  L A+ + VI   ++   D+
Sbjct: 674 KGNKIINIPGSRLQAREEFVIDYGVISEGDS 704


>gi|308189673|ref|YP_003922604.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|319776856|ref|YP_004136507.1| topoisomerase iv subunit a [Mycoplasma fermentans M64]
 gi|307624415|gb|ADN68720.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|318037931|gb|ADV34130.1| Topoisomerase IV subunit A [Mycoplasma fermentans M64]
          Length = 856

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/733 (32%), Positives = 389/733 (53%), Gaps = 64/733 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M ++G++WNK + K AR+ G+V+GK
Sbjct: 25  MADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSMYELGLQWNKPFKKSARVVGDVIGK 84

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQDW +   L+E  GN GS+D DP AA RYTE RL   A  ++ 
Sbjct: 85  YHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSIDDDPAAAMRYTEVRLAALADLVIG 144

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TV F PN+D S +EPVVL +  PN+L+NG  GIA G AT +P HNL E++D  +A
Sbjct: 145 DLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAKGIASGFATEMPPHNLNEILDASIA 204

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I NPDI L  L + ++GPDFPTG V+ G+ GI  A+  GRG I +  VS       ++ 
Sbjct: 205 KIKNPDIQLSKLFKYVKGPDFPTGGVVYGQQGIYEAFERGRGRITL--VSRYRTFEDNKN 262

Query: 265 QIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY V K+ ++  I  ++ ++ +  + +++D+SDR G  ++I L + A+ +VI
Sbjct: 263 KFIEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIKDQSDRNGISILITLDKKANEEVI 322

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN L + T +Q  ++ N VA+    P+   L  +L  ++    +V  +  ++ L K + R
Sbjct: 323 LNYLLQKTEMQIYYTYNNVAIKNNSPQTLGLNDLLNCYLDHVRDVKRKTLEFDLVKYKAR 382

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             +++G        DEV+ +IR S   E ++  ++Q            +L++   +T+  
Sbjct: 383 LEIVLGFLKVAEITDEVIAVIRKS---ENSKAGVIQ------------NLMNHFGFTLN- 426

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                    Q  AI ELRL +L+   ++    E   L  +IK    +L+ +      + +
Sbjct: 427 ---------QATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLNDKEAFDQYLIE 477

Query: 504 ELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
            L  +K +   PRRT I E    +   + D +  E+  + V+  GY+KR+          
Sbjct: 478 TLQEIKKQFGRPRRTTITEEAFKVSYNEADLVKEEETYIGVTKHGYLKRM---------- 527

Query: 562 GGKGRSGVVMRDEDFVT------DLFIV----STHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                S  V+   DF+T      D  I     +T  ++L F++LG      ++++     
Sbjct: 528 -----SNKVVNSNDFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKW 582

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G  L + + L  GE +   +    + + +N   YV   TK    +R  L +F +++R
Sbjct: 583 KDFGVHLSDFVELVSGEELVGAI----NVTDFNIQNYVCLFTKEAQGKRVVLKEF-EVSR 637

Query: 671 SGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             K   AMKL   DE++  +      D+LL TK G    +  + ++++ G  S G +   
Sbjct: 638 PNKTFTAMKLRKGDELVGAKLSNGYKDVLLITKRGMASLYTENDVQIY-GTKSNGTKSCY 696

Query: 729 LAKGDQVISMAIV 741
           +   D +++ A+V
Sbjct: 697 MPPMDSIVAFAMV 709


>gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
 gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
          Length = 752

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/740 (33%), Positives = 391/740 (52%), Gaps = 77/740 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DE++ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  I+   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHILMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVLHADA 746
              A+G+  ++   VL + +
Sbjct: 677 AEAARGEDGLAQLYVLPSQS 696


>gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid
           E]
 gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii]
 gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22]
          Length = 738

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 347/598 (58%), Gaps = 53/598 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-AYATGRGSIVI 250
            HNL E+ D  + +IDNP   ++ +M  I+GPDFPTG +I+ +  + N AY TGRGS  +
Sbjct: 182 PHNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQ+ K+ ++E+IA L+++K+I  I+ +RDES     RV
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDEST-DIIRV 300

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE + R     +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ YLLNK + R  +L  L I   NLDE++ IIR    P+T    +M+R        
Sbjct: 361 IIRRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEPKTI---IMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +S +Q   IL  RL  L  L    I +E ++L  +     
Sbjct: 410 ------------------FKISAIQVEVILNTRLRSLQKLEEHAIIDEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLLDMEDEDC---IVREDMVV 540
            IL +   L  I+K+E+ +V+ +  L+T    RRT   E  L  +  D    I +E + +
Sbjct: 452 KILKNHKELWQIVKKEIKAVQTKFGLNTIIGARRTSFEEVDLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLG 596
             S +G+V        R+ +      S +  ++ D  T+ FI+  +T+  +L  SS G
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGD--TEKFIIEAYTTDKILIISSKG 559


>gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 787

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 261/748 (34%), Positives = 408/748 (54%), Gaps = 85/748 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D+ EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 18  MGKSLIPPDDGEEH-IERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 76

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 77  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 136

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 137 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 196

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP---------------------DIDLDALMEI 219
           GIAVGMATNIP HN+ E+    + +I++P                     + D  AL++ 
Sbjct: 197 GIAVGMATNIPPHNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLKC 256

Query: 220 -IRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQ--IVVTEIPYQV 275
            +RGPDFPTG +++   G I +AY TGRG+  +R  +  EK  G+R    IV+TEIPYQV
Sbjct: 257 KVRGPDFPTGGILVEEHGNILDAYRTGRGAFRVR--ARWEKEEGNRGTWVIVITEIPYQV 314

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQ 334
            K+ ++EKIAEL+  K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+
Sbjct: 315 QKSRLIEKIAELLLAKKLPLLDDVRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELE 373

Query: 335 SLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S  S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L GL IA
Sbjct: 374 SRVSLNMNVLSHGKVPNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIA 433

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             NLDEV+RIIR    P   +++LM+                          T  L++VQ
Sbjct: 434 YLNLDEVIRIIREEDEP---KQDLMR--------------------------TFELTDVQ 464

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV----- 508
             +IL +RL  L  L   +IR E + L +E  +   +L+S +R    I  E+ SV     
Sbjct: 465 AESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQWKKISAEIKSVREKFG 524

Query: 509 -KDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K EL   R T       D+ED  +  I RE + + VS  G++        RA +     
Sbjct: 525 PKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLAD 576

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
            S +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ + 
Sbjct: 577 FSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDME 634

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             + I T   F  D ++     ++  +  GN      S+ +   R GK  M + + DE  
Sbjct: 635 NDQDILTA--FVHDPAA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 688

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAI 713
             +  + ++ I +  +  + V FP+S I
Sbjct: 689 LCQRVSGDH-IAVVGENRKMVVFPLSDI 715


>gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
 gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
          Length = 748

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/682 (35%), Positives = 363/682 (53%), Gaps = 63/682 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M  MG+     + KCA
Sbjct: 14  IQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSDMGLRSGGSFKKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG +HPHG+ +IYDAL R+AQD+++R  L+ GQGNFG++DGD  AA RYTE ++
Sbjct: 74  KIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNIDGDNAAAMRYTESKM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L++ +G+D VDFR  YD    EP VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 134 TAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGATGIAVGMATSIPPHNA 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I  PD  ++ L+E ++GPDFPTG +++  R  +  AY TGRG   +R   
Sbjct: 194 AELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLEAYKTGRGGFRVRAKW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E T     QIV+TE+PYQV K+ ++EKIAEL+  +R+  + D+RDES      V+I  
Sbjct: 254 ETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDVRDESAEDVRLVLIPK 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R     +++  L+R T L+S   +N+  L+ G  P+   L  +L  ++A R EV+ RR+
Sbjct: 314 SRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVLSEWLAHRREVLQRRS 373

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L     R  +L G  IA  NLDEV+RIIR    P   + ELM+              
Sbjct: 374 RHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEP---KLELMK-------------- 416

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T  LS+VQ  AIL +RL  L  L   +IR E ++L  E  E   +L+S
Sbjct: 417 ------------TFELSDVQAEAILNMRLRSLRKLEELEIRKEFDALTAEKAEIESLLAS 464

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIVEG-LLDME--DEDCIVREDMVVTVSHL 545
            ++    +  E+ +V+           RRT   E  + D+   ++  I +E + V +S  
Sbjct: 465 DAKQWQTVAWEVGNVRKTFSKETELGARRTNFAEAPVADLAAIEQAMIEKEPITVVISEK 524

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            RG KG     + +  +D D +   F  +T   ++  ++ G  Y  
Sbjct: 525 GWI------------RGMKGHLPDFASLQFKDGDGLKLAFHANTTDKLVIVTTGGKAYTL 572

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              +LP G  +  G+ L  ++ ++  + + T   F  D +      ++ A+  GN     
Sbjct: 573 GADKLPGG--RGHGEPLRIMVDMDNDQAVLTA--FVHDSAR----KLLMASTAGNGFIVA 624

Query: 662 LSDFIQINRSGKIAMKLDSRDE 683
            SD +   R GK  M +   DE
Sbjct: 625 ESDMVANTRKGKQIMNVGLPDE 646


>gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
 gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017]
 gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
          Length = 752

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112]
 gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74]
          Length = 752

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 753

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/645 (36%), Positives = 354/645 (54%), Gaps = 54/645 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWAQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+VIE K R     +++  L+R T L+S  S+N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRIVIEPKSRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ +   +   R  VL G  IA  N+DEV+RIIR    P+     L
Sbjct: 357 LREWLDHLRDVLLRRSNHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPV---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                          T  L+E+Q  AIL +RL  L  L   +I+ E 
Sbjct: 414 MK--------------------------TFNLTEIQAEAILNMRLRSLRKLEEFEIKKED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIV---EGLLDMED 529
             L  E+K    +L S +     + +++  V++     TP   RRT+     E  L   +
Sbjct: 448 KDLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V+ +   V        +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWVRTLKGHV--------EDLSGLNFKQDDKLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           L  ++ G  Y   V +LP G  +  G+ +   + + Q   I T+ 
Sbjct: 560 LLLATNGRFYALDVAKLPGG--RGHGEPIRMFIDMEQDAAIVTVF 602


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/628 (37%), Positives = 354/628 (56%), Gaps = 49/628 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  + ++    + KC
Sbjct: 6   GIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAGFKKC 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+AL R+AQD++ R  LI+GQGNFG++DGD  AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LLD L +D VDFR  YDG  +EP+VL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 126 LTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
             E+ +    +I NP+ D  AL++ I+GPDFPTG +++    G+   Y TGRGS  +R  
Sbjct: 186 AFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFRVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE     +  +VVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES      V++ 
Sbjct: 246 WAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRIVLVP 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRR 372
             R   A +++  L++ T L+S F +NM  L +G  P    +  +L+ ++  R+ V++RR
Sbjct: 306 RSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAVLIRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L++   R  VL G  +A  NLDEV+RIIR    P+    ELM+             
Sbjct: 366 SQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKA---ELMR------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++VQ  AIL +RL  L  L   +IR E + L  E  E   +L 
Sbjct: 410 -------------TFGLTDVQAEAILNMRLRSLRKLEEMEIRKEHDKLSAERDELKALLG 456

Query: 493 SRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL-LDMED--EDCIVREDMVVTVSH 544
           S +R    I +++  V      +TP   RRT   E    D+ED  +  I +E + V +S 
Sbjct: 457 SEARQWTRIGKDIAEVGKAYGPETPLGRRRTGFSEAPGHDVEDLQQAMIEKEPITVVISD 516

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +   +  S +  +  D +   F   T   +L FS+ G  +     
Sbjct: 517 KGWI--------RALKGHQQDLSSLAFKQGDKLKLAFHAETTDKILVFSTGGKFFTLGAD 568

Query: 605 RLPIGSPQARGKALINILSLNQGERITT 632
           RLP G  +  G+ +  ++ + +G+ + +
Sbjct: 569 RLPGG--RGHGEPIRLMVDMEEGQDVVS 594


>gi|330723479|gb|AEC45849.1| DNA topoisomerase IV subunit A [Mycoplasma hyorhinis MCLD]
          Length = 888

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 403/719 (56%), Gaps = 56/719 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M  +G++ +K + K AR+ G+V+GKYHPH
Sbjct: 28  FIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKAFKKSARVVGDVIGKYHPH 87

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IY+AL RMAQ+W + L L+E  GN GS+D DP AA RYTE RL+   + +L+ + K
Sbjct: 88  GDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRYTETRLEAVTNLMLEIINK 147

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            TV+F PN+D S +EPVVL   +PN+LVNG  GIA G AT+IP HNL E++D C+  + N
Sbjct: 148 KTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDIPPHNLAELIDACIEKLKN 207

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
                  + +II+GPDFPTG +I    GI  A+ TG+G +V+     I       + I +
Sbjct: 208 KATPYSKIRQIIKGPDFPTGGIIYDTKGIDEAFETGQGKVVLVSKYKI-INEPKYKAIEI 266

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            EIP+ V K+ ++++I E+  EK+I  I D+ D+SDR G  ++IEL++ A+ ++ILN L 
Sbjct: 267 EEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISILIELEKEANIELILNYLL 326

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T +Q  +S N VA++ Y P+  ++  +L  ++   +E+  +  ++ L K   R  ++ 
Sbjct: 327 QKTQMQISYSYNSVAIHNYTPKLLSIYKMLDYYLNHLKEIKTKEIEFDLKKNNQRLEIVK 386

Query: 389 GLAIAVANL-DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
           G  + VA++ DEV++IIR S N +    E + +++                     D T+
Sbjct: 387 GF-LKVADITDEVIKIIRNSDNSKQGVIEALVQNF---------------------DFTL 424

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS----RSRLLGIIKQ 503
               +Q  AI E+RL RL+ + + +  NE N+L  ++ +   +L +       L+ I+K+
Sbjct: 425 ----LQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLENDLEFNQYLVSILKE 480

Query: 504 ELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
               +K +    R+T+I+     +E   E+ I  E+    ++  G  K++   V+ +   
Sbjct: 481 ----IKTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFESN-- 534

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ-ARGKALI 619
                S + ++++D+   +  + T   +L F+S+G +++      +P+ + + A  KA  
Sbjct: 535 ---DISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIF------IPLHTIEDATFKATW 585

Query: 620 NILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAM 676
           + L ++   ++  TI+   E      N +V   TK+G  +R  L D ++++R  K  +AM
Sbjct: 586 SDLQIDYLLKKDETIISAIEIADFSENQFVCLITKNGMGKRISLKD-LEVSRFKKTILAM 644

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           K+   D+++  +      DI L T   +  R+    + ++ G N+ GVR + L +G+ +
Sbjct: 645 KIKQDDQLIGAKLSDNYQDIALFTNQNRASRYSEIEVPIY-GTNTAGVRILKLKEGEYI 702


>gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5]
 gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5]
          Length = 752

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/738 (34%), Positives = 389/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568]
 gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568]
          Length = 757

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/745 (34%), Positives = 395/745 (53%), Gaps = 73/745 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA+ID P   L+ L+E ++GPD+PT A +I  R  I+  Y  GRGS+ +R
Sbjct: 187 HNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWSKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+  +P+   L+ IL  ++AFR +
Sbjct: 302 VIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDN-RPQVKGLVEILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LMQR       
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGISDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  +L  +IK+E+ +        RR+ I E      M + D +  E + + +S +
Sbjct: 452 QALLASERKLNTLIKKEIQADAQAYGDDRRSPITERAEAKAMSEHDFVPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  +  D         T+  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPSGLSYKAGDSFRSAARGKTNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G      
Sbjct: 560 DPLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA--- 717
            +D +  NR+GK+ + L    + L+      E+D+LL+ T  G+ + FP++ +   +   
Sbjct: 612 FNDLVARNRAGKVMITLPDNAKALAPMEIHGEDDMLLSITAAGRMLFFPVADLPQLSKGK 671

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
           G   V +     A G+  ++   VL
Sbjct: 672 GNKIVSIPSAQAASGEDKLAWLFVL 696


>gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
 gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
          Length = 757

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/734 (34%), Positives = 386/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPTVKGLLEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQ                   
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ + E      M D D +  E + + +S +G+V        
Sbjct: 463 TMIKKEIQADAAAYGDDRRSPLTERAEAKAMSDHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPGGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  P+D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L    + L        +D+LL+ T  G+ + FP++ +   +   G   V + G  
Sbjct: 623 KTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKGNKIVSIPGAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  ++   VL
Sbjct: 683 AAAGEDRLAWLFVL 696


>gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
 gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
          Length = 750

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/634 (37%), Positives = 352/634 (55%), Gaps = 51/634 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    +
Sbjct: 9   EPAEIHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAF 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++DGD  AA RYT
Sbjct: 69  KKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  GIAVGMAT+IP
Sbjct: 129 EARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  ++  +  I  AY TGRGS  +
Sbjct: 189 PHNAAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +     +V+TEIPY V K+ ++EKIAEL+ EK++  + D+RDES  +  R+
Sbjct: 249 RAKWKQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDVRDES-AEDVRL 307

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEV 368
           VIE K +     +++  L+R T L+S   +N+ V + G  P+   L   L+ ++    +V
Sbjct: 308 VIEPKSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDV 367

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ Y   +  +R  +L G  IA  N+DEV+RIIR    P+     LM+         
Sbjct: 368 LLRRSNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPV---LMK--------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  L+EVQ  AIL +RL  L  L   +IR E  +L  E+K   
Sbjct: 416 -----------------TFKLTEVQAEAILNMRLRSLRKLEEMEIRTEDKNLRGELKGIN 458

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIV---EGLLDMEDEDCIVREDMVV 540
           ++L+S       + +++ +V+D     TP   RRT      E  L   +E  I RE + V
Sbjct: 459 ELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRRRTNFADAPEHDLAAIEEAFIEREPVTV 518

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  G+V+ +   V           S +  + +D +   F     + VL F+S G  Y 
Sbjct: 519 VVSEKGWVRTLKGHVADL--------SNLQFKTDDQLGQAFFAENTSKVLLFASNGKFYS 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
             V +LP G  +  G+ +   + L+Q   I ++ 
Sbjct: 571 LDVGKLPGG--RGHGEPIRMFIDLDQDASIVSMF 602


>gi|329725098|gb|EGG61592.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU144]
          Length = 405

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/394 (47%), Positives = 276/394 (70%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            L +A  R H++ GL  A++ LDEV+ +IR S N
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKN 398


>gi|238809641|dbj|BAH69431.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 857

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/733 (32%), Positives = 388/733 (52%), Gaps = 64/733 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M ++G++WNK + K AR+ G+V+GK
Sbjct: 26  MADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSMYELGLQWNKPFKKSARVVGDVIGK 85

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQDW +   L+E  GN GS+D DP AA RYTE RL   A  ++ 
Sbjct: 86  YHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSIDDDPAAAMRYTEVRLAALADLVIG 145

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TV F PN+D S +EPVVL +  PN+L+NG  GIA G AT +P HNL E++D  +A
Sbjct: 146 DLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAKGIASGFATEMPPHNLNEILDASIA 205

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I NPDI L  L + ++GPDFPTG V+ G+ GI  A+  GRG I +  VS        + 
Sbjct: 206 KIKNPDIQLSKLFKYVKGPDFPTGGVVYGQQGIYEAFERGRGRITL--VSRYRTFEDKKN 263

Query: 265 QIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY V K+ ++  I  ++ ++ +  + +++D+SDR G  ++I L + A+ +VI
Sbjct: 264 KFIEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIKDQSDRNGISILITLDKKANEEVI 323

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN L + T +Q  ++ N VA+    P+   L  +L  ++    +V  +  ++ L K + R
Sbjct: 324 LNYLLQKTEMQIYYTYNNVAIKNNSPQTLGLNDLLNCYLDHVRDVKRKTLEFDLVKYKAR 383

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             +++G        DEV+ +IR S   E ++  ++Q            +L++   +T+  
Sbjct: 384 LEIVLGFLKVAEITDEVIAVIRKS---ENSKAGVIQ------------NLMNHFGFTLN- 427

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                    Q  AI ELRL +L+   ++    E   L  +IK    +L+ +      + +
Sbjct: 428 ---------QATAIAELRLYKLSKTDKEAFLLEKEELEKQIKHVEMLLNDKEAFDQYLIE 478

Query: 504 ELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
            L  +K +   PRRT I E    +   + D +  E+  + V+  GY+KR+          
Sbjct: 479 TLQEIKKQFGRPRRTTITEEAFKVSYNEADLVKEEETYIGVTKHGYLKRM---------- 528

Query: 562 GGKGRSGVVMRDEDFVT------DLFIV----STHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                S  V+   DF+T      D  I     +T  ++L F++LG      ++++     
Sbjct: 529 -----SNKVVNSNDFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNYAMVPIYKIEESKW 583

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G  L + + L  GE +   +    + + +N   YV   TK    +R  L +F +++R
Sbjct: 584 KDFGVHLSDFVELVSGEELVGAI----NVTDFNIQNYVCLFTKEAQGKRVVLKEF-EVSR 638

Query: 671 SGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             K   AMKL   DE++  +      D+LL TK G    +  + ++++ G  S G +   
Sbjct: 639 PNKTFTAMKLRKGDELVGAKLSNGYKDVLLITKRGMASLYTENDVQIY-GTKSNGTKSCY 697

Query: 729 LAKGDQVISMAIV 741
           +   D +++ A+V
Sbjct: 698 MPPMDSIVAFAMV 710


>gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum]
          Length = 758

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 244/711 (34%), Positives = 384/711 (54%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+  VD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  + +IDNP+  L  +M+ ++GPD+PT A I+  R  I+  Y +GRGSI +R
Sbjct: 188 HNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D++++ L+  T L+  F V  NM+ LN  +PE   L+ IL  ++ FR  
Sbjct: 303 VIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNN-RPEVKGLVTILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+     LM R       
Sbjct: 362 TVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S +Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGISAIQADAILDTKLRHLAKLEEMKIRGEQDELAKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ ++E      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLIERAESKALTERDLVPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++  V+F  S G  Y  
Sbjct: 513 GWV------------RHAKGHDVDCQSLSYKSGDQYLAHACGKSNQQVVFLGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S + +G+ +   L++ +G  I  ++   E+E  W     +  +  G     K
Sbjct: 561 EAHSLP--SARTQGEPITGRLNITEGSSIRQVV-MGEEEQLW-----LVGSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             + +  NRSGK  + L    E+++ +     + +DIL  T  G+ + FPI
Sbjct: 613 GGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDILAITNQGRMLLFPI 663


>gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94]
 gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94]
          Length = 752

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   +L
Sbjct: 677 AEAARGEDGLAQLYIL 692


>gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
 gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
          Length = 752

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLLPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
 gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
          Length = 752

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 260/752 (34%), Positives = 393/752 (52%), Gaps = 78/752 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +L   TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV    VA++D P + LD +M  +  PDFPT A +I  R  I+  Y  GRGS+ +R
Sbjct: 187 HNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   EK  G+    V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AV--WEKEDGN---AVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  + V  NM+ L+  +P    L+ IL  ++ +R +
Sbjct: 302 VIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDN-RPAVKGLVDILNEWIVYRRQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKPV---LMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  E 
Sbjct: 411 -------------------FNLSDTQAEAILELKLRHLAKLEEMKIRGEQDELIKERDEL 451

Query: 488 LDILSSRSRLLGIIKQELL----SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             IL S  +L  +IK+E+     +  DE  +P R R  E    + + + +  E + V +S
Sbjct: 452 QSILGSERKLNTLIKKEIQADAKAYGDERRSPLRER--EEAKALSEHEILPSEPITVVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +G+V            R  KG     S +  +  D         T+  V+F  + G  Y
Sbjct: 510 EMGWV------------RSAKGHDIEPSNLNYKAGDSFKGAARGKTNQPVVFLDTTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S +++G+ L   LSL  G  +  ++   +DE  +     + A+  G    
Sbjct: 558 SVDPLELP--SARSQGEPLTGRLSLPPGATVEHVL-MAQDEQKY-----LMASDAGYGFI 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
              +D +  N++GK  + L    +IL+ +E   ++ D+LL  TK G+ + FP++ +   +
Sbjct: 610 CTFNDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLAITKAGRMLMFPVADLPQLS 669

Query: 718 ---GRNSVGVRGISLAKGDQVISMAIVLHADA 746
              G   + + G   A G+ ++   +VL A A
Sbjct: 670 KGKGNKIINITGAQAASGEDLLVWLLVLPAQA 701


>gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107]
 gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107]
          Length = 752

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 254/732 (34%), Positives = 391/732 (53%), Gaps = 74/732 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +  + EE      +S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTEIPVLPEAEER-----ISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSP 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LLD+LG+ TVD++PN+DG+  EP V  AR PN+L+NG
Sbjct: 116 D-DPKSFAAMRYTESRLTKYSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMAT+IP HNL EVV+ CV ++DNP   +  L + + GPD PT A +I  R  +
Sbjct: 175 TTGIAVGMATDIPPHNLREVVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDEL 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V   ++ SGD   IV+T +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 235 IKMYETGRGSVRMRAVWQKDEESGD---IVITALPHQVSGAKILEQIAAQMQAKKLPMVA 291

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFT 353
           DLRDESD +    ++ + R    D+  ++  L+  T L+  + VNM  + ++G +P   +
Sbjct: 292 DLRDESDHENPTRLVVVPRSNRVDLEQVMQHLFATTELERTYRVNMNVIGIDG-RPAVKS 350

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  +++FR     RR +Y L+K   R H+L GL IA  NLDEV+RIIR   +P+  
Sbjct: 351 LSKILGEWLSFRTVTTRRRLQYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDPKA- 409

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
             ELM+R                            L+E QT  ILE +L +L  L    I
Sbjct: 410 --ELMKR--------------------------FGLTEDQTEYILETKLRQLARLEEMKI 441

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R E + L  E  +   +L S  +L  ++++ELL   ++    RR+ IV       + + +
Sbjct: 442 RGEQSDLEKERDQLQSVLGSAVKLKNLVRKELLQAAEQYGDDRRSPIVVRAEAQALSETE 501

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHT 587
            +  E + V +S  G++            R  KG     +G+  +  D         ++ 
Sbjct: 502 LMSVEPITVVISDKGWI------------RSAKGHDIDPTGLSYKAGDSFKFAVHGKSNQ 549

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +V+   S G  Y      LP  S + +G+ L   ++   G     ++   +D+       
Sbjct: 550 NVILLDSTGRSYAIPAHNLP--SARGQGEPLSGRINPPSGATFEGVLMGADDQR------ 601

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQC 705
           V+ A+  G     KL D    N+SGK  + L    ++L  +        LL   +  G+ 
Sbjct: 602 VLLASDAGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQALLAAVSNDGRL 661

Query: 706 VRFPISAIRVFA 717
           + FP++ +   A
Sbjct: 662 LVFPVTELPELA 673


>gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
 gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
          Length = 752

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/738 (34%), Positives = 390/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+I+ P+  LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L  IL  ++ FR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLREILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++  V+F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 748

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 247/747 (33%), Positives = 399/747 (53%), Gaps = 74/747 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++ +++GPD+PT A +I  +  I   Y  GRGSI +
Sbjct: 187 PHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E+      +IV++ +P+Q + + ++E++A  +R K++  + D+RDESD +   R
Sbjct: 247 RAVWKKEEG-----EIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           +VI  +      D +++ L+  T L+  + V  NM+ L+G KP    L+ IL  +++FR 
Sbjct: 302 IVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLLTILNEWLSFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR   N +  + ELM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIR---NEDEPKAELMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ  AIL LRL  L  L    ++ E + L  E  E
Sbjct: 412 --------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYK 600
            G+V            R  KG    V        D ++      ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L +G  +  ++       + +   V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPEGATVQQVL------MANSETKVLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   + 
Sbjct: 612 TFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALSK 671

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   + +   +   GD+ ++  +V+
Sbjct: 672 GKGNKIINISAAAAKSGDEYLARLLVI 698


>gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
 gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
          Length = 752

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/761 (33%), Positives = 410/761 (53%), Gaps = 87/761 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAASKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+ D  + +ID+P  +L  +ME ++GPD+PT A +I  ++ I+  Y TGRGSI +R
Sbjct: 188 HNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYKTGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D +++ L+  T L+  F V  NM+ L+  +P+   L+ ILK ++ FR  
Sbjct: 303 VVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILKEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++E+Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+ +  D+    RR+ +VE      M + D +  E + V +S  
Sbjct: 453 EKLLGSERRLNTLIKKEIQADADKYGDDRRSPLVERAEAKAMTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+++      +     G   +SG          D F+ S    ++   +F  S G  Y  
Sbjct: 513 GWIRHA--KGHEVDAEGLNYKSG----------DKFLASAKGKSNQQAVFLGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L+++ G  I  ++   EDE  W     +  +  G     K
Sbjct: 561 ESHSLP--SARSQGEPITGRLNISAGTSIRQVV-MGEDEQLW-----LVGSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGR 719
            SD +  N+SGK  + L    E+++       + N IL  T  G+ + FPI  +      
Sbjct: 613 GSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESNQILAITNQGRMLLFPIKDL------ 666

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                  +S  KG+++I++       A   ER  ++ H+ A
Sbjct: 667 -----PQLSKGKGNKIINI-----PSAKAKEREEFVSHLMA 697


>gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14]
          Length = 752

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 389/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82]
          Length = 752

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L  R PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGMAQLYVL 692


>gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica]
          Length = 748

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 257/745 (34%), Positives = 391/745 (52%), Gaps = 75/745 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 8   GVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV +  V ++D P   LD LME ++GPD+PT A +I     I+  Y  GRGS+ +R
Sbjct: 187 HNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V    K  G+   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AV--WSKEDGN---VVITALPHQVSGAKILEQIASQMRAKKLPMVDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++N L+  T L+  + V  NM+ L+  +P    L+ IL  ++ FR E
Sbjct: 302 VIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDN-RPTVKGLVEILSEWLVFRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V +R  + L K   R HVL GL IA  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPKPV---LMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE QT AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGLSETQTEAILELKLRHLAKLEEMKIRGEQDELAKERDKL 451

Query: 488 LDILSSRSRLLGIIKQELL----SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             IL S  +L  ++K+E++    +  DE  +P R R  +    M + D    E + + +S
Sbjct: 452 QAILGSERKLNTLLKKEIIADAATYGDERRSPMRER--DEAKAMSEHDITPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +G+V            R  KG     +G+  +  D         ++  V+F  + G  Y
Sbjct: 510 EMGWV------------RSAKGHDIDPAGLNYKAGDSFRGAARGKSNQPVVFIDTTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+L  G  +  ++    DE  +     + A+  G    
Sbjct: 558 SLDPRDLP--SARGQGEPLTGKLTLPAGATVEHVL-MASDEQKF-----LMASDAGYGFI 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
              SD +  NR+GK  + L     +++ +E   +++D+LL  T  G+ + FP++ +   +
Sbjct: 610 CTFSDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLAITSTGRMLMFPVADLPQLS 669

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
                 +  +  A GD+++S   +L
Sbjct: 670 KGKGNKIISVQAASGDELLSGLFIL 694


>gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3]
          Length = 752

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 387/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617]
          Length = 758

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/747 (33%), Positives = 396/747 (53%), Gaps = 73/747 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N K+ 
Sbjct: 6   QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ 
Sbjct: 185 PPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSVR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ +   
Sbjct: 245 MRAV--WKKEEGD---VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHENPT 299

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
            ++ + R    D+  ++N L+  T L+  +  ++NM+ LN  +P    L+ IL  ++ FR
Sbjct: 300 RLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNN-RPAVKNLLEILSEWLIFR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R     
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPV---LMSR----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +SE+Q  AILEL+L  L  L    IR E + L  E  
Sbjct: 411 ---------------------FDISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKERA 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVS 543
               IL+S  ++  ++K+EL +  D     RR+  R  E    + + + I  E + + +S
Sbjct: 450 HLEAILASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHELIPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG     +G+  +  D         ++  V+F  S G  Y
Sbjct: 510 QSGWV------------RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFIDSTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G  +  ++   E +       ++ A+  G    
Sbjct: 558 ALDPLTLP--SARGQGEPLTGKLTPPPGAVVEQVLMADETQK------LLMASDAGYGFV 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA- 717
              S+ +  NR+GK  + L S  ++++       +D+LL  T  G+ + FP+S +   + 
Sbjct: 610 CTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVSELPQLSK 669

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   V +     A G+  ++  ++L
Sbjct: 670 GKGNKIVSIPSAEAASGEDKLAWLLLL 696


>gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
 gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
          Length = 771

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 265/753 (35%), Positives = 390/753 (51%), Gaps = 74/753 (9%)

Query: 1   MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+     D+E    G  ++++T   + +YL YAI+V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MTDQANLFDQEAPADGGEALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+GQGNFGS
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++   TVDF+PNYDGS +EP +L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT IP+HNL EV    VA+I NP +  + LM I+ GPDFP G  +I   T I 
Sbjct: 181 SGIAVGMATEIPSHNLHEVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------- 291
           + Y++GRGS+ +R    IE  +  + Q VVTE+P+  +   +LE+I EL   K       
Sbjct: 241 DIYSSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKS 300

Query: 292 ----------RIVDIAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFS 338
                      ++ + D +RDES R    R+V E K +        N L  +TSL++  S
Sbjct: 301 LSPEQLALKQTVLSMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVS 360

Query: 339 VNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V + G  +P + +L  IL+ ++ FR   + RR+++ L K  DR H+L G    + N+
Sbjct: 361 INLVMIGGDGRPRQKSLGDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V++IIR S  P+ A                L+D                LSE Q   I
Sbjct: 421 DKVIKIIRESDEPKPA----------------LMD-------------AFRLSERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+ + + +    RR
Sbjct: 452 LEIRLRQLARLETIKIQQELAELRNEKTTLQDLLDNPSSMKRLVIKEIEADEKQFGDARR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T ++E       E  ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 T-LIEVAEKASVETKVIDEPVTVVISQKGWV--------RARTGHGHDAAQFTFKAGDTL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            + F   T  S+L F S G +Y   V  LP    +  G  +  ++ L  G RI      P
Sbjct: 563 YNTFECRTVDSLLVFGSNGRIYSVPVSALP--GARGDGVPITTLVELASGSRILHYFAGP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDI 696
            D      + ++ A+  G     K  D +   R GK  + LD  DE L+    T   + I
Sbjct: 621 AD------VTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDEPLAPCPVTAGASAI 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              ++ G+ + F I  I+      + G RG+ L
Sbjct: 675 ACLSEKGRLLVFGIDEIKSL----TAGGRGVIL 703


>gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2]
          Length = 752

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/738 (34%), Positives = 390/738 (52%), Gaps = 81/738 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++K+EL     +  DE  +P + R  E    M + D +  E + + +S +G+V      
Sbjct: 459 NLLKKELQADAQAYGDERRSPLQER--EEAKAMSEHDMLPSEPVTIVLSQMGWV------ 510

Query: 555 VYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  KG      G+  +  D         ++   +F  S G  Y       PI  
Sbjct: 511 ------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPGVFVDSTGRSYAID----PITL 560

Query: 611 PQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  
Sbjct: 561 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGV 724
           NR+GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674

Query: 725 RGISLAKGDQVISMAIVL 742
                A+G+  ++   VL
Sbjct: 675 PSAEAARGEDGLAQLYVL 692


>gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163]
          Length = 758

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/747 (33%), Positives = 396/747 (53%), Gaps = 73/747 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N K+ 
Sbjct: 6   QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ 
Sbjct: 185 PPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSVR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ +   
Sbjct: 245 MRAV--WKKEEGD---VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHENPT 299

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
            ++ + R    D+  ++N L+  T L+  +  ++NM+ LN  +P    L+ IL  ++ FR
Sbjct: 300 RLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNN-RPAVKNLLEILSEWLIFR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R     
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPV---LMSR----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +SE+Q  AILEL+L  L  L    IR E + L  E  
Sbjct: 411 ---------------------FDISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKERA 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVS 543
               IL+S  ++  ++K+EL +  D     RR+  R  E    + + + I  E + + +S
Sbjct: 450 HLEAILASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHELIPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG     +G+  +  D         ++  V+F  S G  Y
Sbjct: 510 QSGWV------------RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFIDSTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G  +  ++   E +       ++ A+  G    
Sbjct: 558 ALDPLTLP--SARGQGEPLTGKLTPPPGAVVEQVLMADETQK------LLMASDAGYGFV 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA- 717
              S+ +  NR+GK  + L S  ++++       +D+LL  T  G+ + FP+S +   + 
Sbjct: 610 CTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVSELPQLSK 669

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   V +     A G+  ++  ++L
Sbjct: 670 GKGNKIVSIPSAEAASGEDKLAWLLLL 696


>gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
 gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
          Length = 752

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E +    E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
 gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
          Length = 757

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/733 (34%), Positives = 383/733 (52%), Gaps = 71/733 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ FR + V  R  Y L K
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVFRRQTVRNRLNYRLEK 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL IA  N+DEV+ IIR    P+     LMQ                    
Sbjct: 373 VLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------- 410

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L  
Sbjct: 411 -------FAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNT 463

Query: 500 IIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +IK+E+ +        RR+ + E      M D D +  E + + +S +G+V         
Sbjct: 464 MIKKEIQADAAAYGDDRRSPLTERAEAKAMSDHDIVPSEPVTIVLSEMGWV--------- 514

Query: 558 AQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S + 
Sbjct: 515 ---RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLP--SARG 569

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L   L+   G  I  ++  P+D+       ++ A+  G       +D +  NR+GK
Sbjct: 570 QGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTFNDLVAKNRAGK 623

Query: 674 IAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISL 729
             + L    + L        +D+LL+ T  G+ + FP++ +   +   G   V +     
Sbjct: 624 TMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSKGKGNKIVSIPSAQA 683

Query: 730 AKGDQVISMAIVL 742
           A G+  ++   VL
Sbjct: 684 AAGEDRLAWLFVL 696


>gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83]
          Length = 752

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 388/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSLMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|304372932|ref|YP_003856141.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309123|gb|ADM21603.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 881

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/719 (32%), Positives = 403/719 (56%), Gaps = 56/719 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M  +G++ +K + K AR+ G+V+GKYHPH
Sbjct: 21  FIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKAFKKSARVVGDVIGKYHPH 80

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IY+AL RMAQ+W + L L+E  GN GS+D DP AA RYTE RL+   + +L+ + K
Sbjct: 81  GDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRYTETRLEAVTNLMLEIINK 140

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            TV+F PN+D S +EPVVL   +PN+LVNG  GIA G AT+IP HNL E++D C+  + N
Sbjct: 141 KTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDIPPHNLAELIDACIEKLKN 200

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
                  + +II+GPDFPTG +I    GI  A+ TG+G +V+     I       + I +
Sbjct: 201 KATPYSKIRQIIKGPDFPTGGIIYDTKGIDEAFETGQGKVVLVSKYKI-INEPKYKAIEI 259

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            EIP+ V K+ ++++I E+  EK+I  I D+ D+SDR G  ++IEL++ A+ ++ILN L 
Sbjct: 260 EEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISILIELEKEANIELILNYLL 319

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T +Q  +S N VA++ Y P+  ++  +L  ++   +E+  +  ++ L K   R  ++ 
Sbjct: 320 QKTQMQISYSYNSVAIHNYTPKLLSIYKMLDYYLDHLKEIKTKEIEFDLKKNNQRLEIVK 379

Query: 389 GLAIAVANL-DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
           G  + VA++ DEV++IIR S N +    E + +++                     D T+
Sbjct: 380 GF-LKVADITDEVIKIIRNSDNSKQGVIEALVQNF---------------------DFTL 417

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS----RSRLLGIIKQ 503
               +Q  AI E+RL RL+ + + +  NE N+L  ++ +   +L +       L+ I+K+
Sbjct: 418 ----LQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTLLENDLEFNQYLVSILKE 473

Query: 504 ELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
               +K +    R+T+I+     +E   E+ I  E+    ++  G  K++   V+ +   
Sbjct: 474 ----IKTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFESN-- 527

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ-ARGKALI 619
                S + ++++D+   +  + T   +L F+S+G +++      +P+ + + A  KA  
Sbjct: 528 ---DISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIF------IPLHTIEDATFKATW 578

Query: 620 NILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAM 676
           + L ++   ++  TI+   E      N +V   TK+G  +R  L D ++++R  K  +AM
Sbjct: 579 SDLQIDYLLKKDETIISAIEIADFSENQFVCLITKNGMGKRISLKD-LEVSRFKKTILAM 637

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           K+   D+++  +      DI L T   +  R+    + ++ G N+ GVR + L +G+ +
Sbjct: 638 KIKQDDQLIGAKLSDNYQDIALFTNQNRASRYSEIEVPIY-GTNTAGVRILKLKEGEYI 695


>gi|15828844|ref|NP_326204.1| DNA topoisomerase IV subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089787|emb|CAC13546.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma pulmonis]
          Length = 939

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/742 (32%), Positives = 398/742 (53%), Gaps = 44/742 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN- 68
           E+  + + S S+   M + +  Y+  +I  RA+PD RDGLKPV RRIL+ MM + + WN 
Sbjct: 10  EQINEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKL-WND 68

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI G+V+GKYHPHG+++IY+A+ RMAQDW + + LI+  GN GS+D DP AA 
Sbjct: 69  KPFKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPAAAM 128

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + ++ +L+ + K+ V F PN+D S +EP VL A  PN+L+NG  GIA G AT
Sbjct: 129 RYTESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFAT 188

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +P HNLGE++D  +A I    + ++ L++ I+GPDFPTG VI G +GI  A+  GRG I
Sbjct: 189 EMPPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVIHGLSGIVQAFKEGRGRI 248

Query: 249 VIR-GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +     HI     D+ +I++T+IPY   K+ ++  I E++  ++I  I ++ D+SDR G
Sbjct: 249 SLTCKYEHI--NLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDG 306

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             + I+L++ A+ + I+  L+  T LQ  ++ N +A+    P    L  +L  ++   + 
Sbjct: 307 ISIAIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSPTLLNLNELLDIYIEHLKT 366

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           + V+  ++ LNKAR R  V+ G        D+++  IR S + +               I
Sbjct: 367 INVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGV------------I 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           +DLI +                S+ Q  AI ELRL RL+       +NE   L  +I + 
Sbjct: 415 EDLIRI-------------FAFSQRQATAIAELRLYRLSQTDFYLYQNEKEELIKQINDF 461

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
             IL+S + L   +   L  +K    TPR+T+I++  L  + + E+ +V E   V++S  
Sbjct: 462 EKILNSDNELKTYLVNILKKIKKTYPTPRKTQIIDEELKRNYDIEELVVDEKCYVSLSQD 521

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRV    ++       G     +++ D ++ L   +T   +L FS  G      +++
Sbjct: 522 GYLKRVSSKTFKTNDFASFG-----LKENDNLSFLSKATTKDKLLIFSDHGNYAIIPIYK 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +     ++ G  + + +  N  E+I  ++   E    +   Y+   T+ G  +R  L+ F
Sbjct: 577 IEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFSQDY---YISLVTQKGLGKRVSLNKF 633

Query: 666 IQINRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + I R  KI  A+ L   D ++ V     + +I+L T     V+F   A+ V + +   G
Sbjct: 634 L-ITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVISTKGQ-G 691

Query: 724 VRGISLAKGDQVISMAIVLHAD 745
            + I L++G++V +M+I    D
Sbjct: 692 NKMIQLSEGEKVSAMSITKTTD 713


>gi|313633454|gb|EFS00280.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 407

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/402 (46%), Positives = 280/402 (69%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +R
Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           +++ + KAR R H+L GL  A++ LDEV+++IR S +   A+
Sbjct: 365 SEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK 406


>gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1]
          Length = 752

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 249/735 (33%), Positives = 386/735 (52%), Gaps = 75/735 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE-RYTECRLQKAAHFLLD 144
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AE RYTE RL K +  LL 
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAEMRYTESRLSKYSELLLS 134

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A
Sbjct: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +   
Sbjct: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA--- 251

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV- 322
             +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+ 
Sbjct: 252 --VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309

Query: 323 -ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L K
Sbjct: 310 QVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL +A  N+DEV+ IIR    P+ A   LM R                   
Sbjct: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------- 406

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  
Sbjct: 407 -------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNN 459

Query: 500 IIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V         
Sbjct: 460 LLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------- 510

Query: 558 AQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG      G+  +  D         ++  V+F  S G  Y       PI  P A
Sbjct: 511 ---RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSA 563

Query: 614 RGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR+
Sbjct: 564 RGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRA 617

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGI 727
           GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +   
Sbjct: 618 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSA 677

Query: 728 SLAKGDQVISMAIVL 742
             A+G+  ++   VL
Sbjct: 678 EAARGEDGLAQLYVL 692


>gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
 gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
          Length = 757

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 252/746 (33%), Positives = 401/746 (53%), Gaps = 74/746 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP   L  LM+ ++GPD+PT A I+  +  ++  Y TGRGS+ +R
Sbjct: 188 HNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGRGSVKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVSILSEWIQFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S++Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FGISDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+EL +  ++    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNTLLKKELKADAEKYGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG      G+  +  D         ++   +F  S G  Y  
Sbjct: 513 GWI------------RHAKGHEVDCEGLNYKAGDNYLAHACGKSNQQAVFLGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K
Sbjct: 561 ESHTLP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ-----LWLV-GSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGR 719
            +D +  NRSGK  + L    EI++ +     + ++IL  T  G+ + FPI  +      
Sbjct: 613 GTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLGKG 672

Query: 720 NSVGVRGISLAKG---DQVISMAIVL 742
               +  I  AK    ++V+S  + L
Sbjct: 673 KGNKIINIPAAKAKAREEVVSHLMAL 698


>gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
 gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
          Length = 757

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 254/745 (34%), Positives = 394/745 (52%), Gaps = 85/745 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TV+F+PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID P   L+AL++I++GPD+PT A +I  R  I+  Y TGRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI  R V   E+      + V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SIRQRAVWKKEEG-----EAVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    D+  I+N L+  T L+  + V  NM+ L+  +P    L  IL  ++
Sbjct: 297 NPTRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDN-RPAVKNLHEILTEWL 355

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R  
Sbjct: 356 VFRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPKPV---LMSR-- 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +SE Q  +ILEL+L  L  L    IR E   L  
Sbjct: 411 ------------------------FGISETQAESILELKLRHLAKLEEVKIRAEQADLEK 446

Query: 483 EIKECLDILSSRSRLLGIIKQEL----LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           E  +    L+S  ++  ++K+EL     S  D+  +P R R  E    + + + +  E +
Sbjct: 447 ERDQLQATLASERKMNTLLKKELQADSASYGDDRRSPLRER--EEAKALSETELVPSEPV 504

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            + +S +G+V            R  KG     +G+  +  D         ++  V F  S
Sbjct: 505 TIVLSQMGWV------------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDS 552

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP  S + +G+ L   L+   G  +  ++  P+D+       ++ A+  
Sbjct: 553 TGRSYTLDPTSLP--SARGQGEPLTGKLTPPPGAVVEQVLMEPDDQR------LLMASDA 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAI 713
           G       SD +  NR+GK  + L     +++      E+D+LL  T+ G+ + FP+  +
Sbjct: 605 GYGFICTFSDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGEL 664

Query: 714 RVFAGRNSVGVRGISLAKGDQVISM 738
                        +S  KG+++IS+
Sbjct: 665 -----------PQMSKGKGNKIISI 678


>gi|13358030|ref|NP_078304.1| topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761865|ref|YP_001752552.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270990|pir||H82886 topoisomerase IV subunit A UU467 [imported] - Ureaplasma
           urealyticum
 gi|6899461|gb|AAF30879.1|AE002143_4 topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827442|gb|ACA32704.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 850

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 388/719 (53%), Gaps = 40/719 (5%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNIP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +IR     +       QI+
Sbjct: 200 HPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIRACIDFKINDNKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 ISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTKKDINLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+L+  ++   +A+    P    L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKILLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                            
Sbjct: 380 EGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ--------------------------VF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D++NE  +L  E K   + ++S       +KQ+++ 
Sbjct: 414 NFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K      R+T++ + L+ +E +ED ++ ++++ + +S  GY+K V    + + +    G
Sbjct: 474 FKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    I+++H  +L  +S   +      ++     +  G+ L N +  +
Sbjct: 534 -----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE 683
             E++  +  + E +   +   +V A++   ++R +LS+ + IN++ K    MKL+  D 
Sbjct: 589 ANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSE-LDINKNSKQISIMKLNDNDN 646

Query: 684 ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           ++S     + ++  I+  +KLG  + F +  I     R + G++ + L   D+V ++ I
Sbjct: 647 LISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIKIMKLKPNDEVSAILI 704


>gi|171920470|ref|ZP_02931772.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902927|gb|EDT49216.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 850

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 388/719 (53%), Gaps = 40/719 (5%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNIP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +IR     +       QI+
Sbjct: 200 HPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIRACIDFKINDNKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 ISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTKKDINLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+L+  ++   +A+    P    L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKILLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                            
Sbjct: 380 EGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ--------------------------VF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D++NE  +L  E K   + ++S       +KQ+++ 
Sbjct: 414 NFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K      R+T++ + L+ +E +ED ++ ++++ + +S  GY+K V    + + +    G
Sbjct: 474 FKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    I+++H  +L  +S   +      ++     +  G+ L N +  +
Sbjct: 534 -----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE 683
             E++  +  + E +   +   +V A++   ++R +LS+ + IN++ K    MKL+  D 
Sbjct: 589 ANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSE-LDINKNSKQISIMKLNDNDN 646

Query: 684 ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           ++S     + ++  I+  +KLG  + F +  I     R + G++ + L   D+V ++ I
Sbjct: 647 LISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIKIMKLKPNDEVSAILI 704


>gi|186701721|ref|ZP_02971413.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700988|gb|EDU19270.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 850

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 388/719 (53%), Gaps = 40/719 (5%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNIP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +IR     +       QI+
Sbjct: 200 HPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIRACIDFKINDNKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 ISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTKKDINLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+L+  ++   +A+    P    L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKILLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                            
Sbjct: 380 EGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ--------------------------VF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D++NE  +L  E K   + ++S       +KQ+++ 
Sbjct: 414 NFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERINSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K      R+T++ + L+ +E +ED ++ ++++ + +S  GY+K V    + + +    G
Sbjct: 474 FKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    I+++H  +L  +S   +      ++     +  G+ L N +  +
Sbjct: 534 -----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE 683
             E++  +  + E +   +   +V A++   ++R +LS+ + IN++ K    MKL+  D 
Sbjct: 589 ANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSE-LDINKNSKQISIMKLNDNDN 646

Query: 684 ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           ++S     + ++  I+  +KLG  + F +  I     R + G++ + L   D+V ++ I
Sbjct: 647 LISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIKIMKLKPNDEVSAILI 704


>gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
 gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
          Length = 770

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 246/711 (34%), Positives = 390/711 (54%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  + +    + SYL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N KY K 
Sbjct: 11  GIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSNNAKYKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD++PN+DG+  EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 SRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV + C  ++DN   +L  L+E ++GPD+PT A +I  ++ I+  Y TGRGSI +R
Sbjct: 190 HNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDIRKMYETGRGSIKMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V + E  +GD   I++T +P+Q +   +LE+IA  ++ K++  ++DLRDESD +    +
Sbjct: 250 AVYYEE--AGD---IIITALPHQASGGKVLEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           +   R    DV  ++  L+  T L+  +  ++NM+ L+G +P+   L  IL  ++ FR++
Sbjct: 305 LITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDG-RPQVKDLRMILSEWLIFRKD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            VVRR +Y L+K   R H+L GL IA  N+DEV+RIIR+   P+                
Sbjct: 364 TVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPKLV-------------- 409

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             L+D             T  LS++Q  AILEL+L  L  L    I+ E + L  E  E 
Sbjct: 410 --LMD-------------TFSLSDIQAEAILELKLRHLAKLEEMKIKGEQDELAKERDEL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+L+  +     RR+ I+E      + +++ I  E + V +S  
Sbjct: 455 QLILGSDRRLKTLIKKEILAAAEMYGDDRRSPIIERSESKALSEKELIPSEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+             R  KG    V+       D ++ S    ++   +F  + G  +  
Sbjct: 515 GWA------------RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSC 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    S+  GE +  ++   +DE  +     + A+  G     K
Sbjct: 563 DAHLLP--SARSQGEPITGRFSIVSGESVEHVV-MGQDEQQY-----LIASDAGYGFVGK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
            +D I  NR+GK  + L    +I++ +       +  L  +  G+ + FP+
Sbjct: 615 FADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSDWCLAISNEGRMLMFPL 665


>gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
 gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/645 (36%), Positives = 355/645 (55%), Gaps = 54/645 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL+  ++GPDFPTG +++  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWMQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  RVVIE K R     +++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRVVIEPKSRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P    + +
Sbjct: 357 LREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEP----KPV 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + +++N                         L++VQ  AIL +RL  L  L   +IR E 
Sbjct: 413 LMKAFN-------------------------LTDVQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMED 529
            +L  E+K    IL S +     + +++  V++     TP   RRT+  +     L   +
Sbjct: 448 KNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V+ +   V           SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWVRTLKGHVADL--------SGLNFKQDDKLDRAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           L  ++ G  Y  +V +LP G  +  G+ +   + + Q   I  + 
Sbjct: 560 LLLATNGRFYSLEVAKLPGG--RGHGEPIRMFIDMEQDAAIVAMF 602


>gi|188524342|ref|ZP_03004374.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273817|ref|ZP_03206351.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660114|gb|EDX53494.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249572|gb|EDY74354.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 852

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 383/723 (52%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIMP----FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYACNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|225550780|ref|ZP_03771729.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379934|gb|EEH02296.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 852

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 384/723 (53%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L+  L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
 gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
          Length = 752

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 251/736 (34%), Positives = 387/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLLPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
 gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
          Length = 752

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 250/736 (33%), Positives = 387/736 (52%), Gaps = 77/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E +    E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +  
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676

Query: 727 ISLAKGDQVISMAIVL 742
              A+G+  ++   VL
Sbjct: 677 AEAARGEDGLAQLYVL 692


>gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 743

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/717 (34%), Positives = 383/717 (53%), Gaps = 76/717 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KCA
Sbjct: 9   IEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ +  D+VDFRP YDG  QEPVVL A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 129 TEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSIPPHNV 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           GE+    + +I +PD  +  LME + GPDFPTG +I+  R  +  AY TGRGS+ IR   
Sbjct: 189 GEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMRIRARW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+      Q+VVTEIPYQV K+ ++E+IA+L+ +K++  + D+RDES     R+V+E 
Sbjct: 249 SVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTD-IRLVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K RG   +V++  L+R T+L+S F++NM  L   + P   +L  +L A++  R +V+ RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHDVLQRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR                           
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIR--------------------------- 400

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             ++     G   T  L+E+Q  +IL +RL  L  L   +IR E  +L  E  +   +L 
Sbjct: 401 --EEDDAKAGLMATFSLTELQAESILNMRLRSLRRLEELEIRKEHAALTAERGDLTALLD 458

Query: 493 SRSRLLGIIKQELLSV------------KDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           S       I +E+ ++            + EL  P R       +++   + + RE + +
Sbjct: 459 SEPLRWKKITEEVKAIRKAFGAGALGTRRSELAAPPRA------IELSAIEAVEREPLTL 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+VK +         +  K   G  +  E   TD   V        F++ G  + 
Sbjct: 513 ILSAKGWVKTLKGHGIDPTTQKFKEGDGFRLAVECQSTDRLCV--------FATDGRAFT 564

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP G  +  G+ +  ++ L+  E +  + P  E         +  +   G V R+
Sbjct: 565 LRAADLPRG--RGDGQPIRLLIELSNDEDLVAVFPVREG----TRHLLASSAGRGLVIRD 618

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVR---FPISAI 713
           +  D +   R+GK  + L   +   S   C   E D ++   LGQ  R   FP++ +
Sbjct: 619 E--DLVAEKRTGKQVLNLKDAE---SARICLPVEGDHVVV--LGQNRRMLVFPVAQL 668


>gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
 gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
          Length = 737

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/531 (39%), Positives = 311/531 (58%), Gaps = 36/531 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +   YL YA++ I  RA+PD+RDG KPVHRRIL+ M QM +       KCA++ GEVMG 
Sbjct: 22  LSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGEVMGG 81

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IY+AL R+AQD++ R  L++GQGNFG++DGD  AA RYTEC+L  AA  LLD
Sbjct: 82  YHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLD 141

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            + +D+VDFR  YD   +EPVVL A +PN+L NG  GIAVGMAT+IP HN+GE++D C  
Sbjct: 142 GIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACQM 201

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           ++D P+     L++++ GPDFPTG V + G   I +AY TGRG + +R     E      
Sbjct: 202 LLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWETEDLGRGV 261

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADV 322
            +I+VTE+PYQV K+ ++E +A+L+  K+   + D+RDES  +  R+++E K R    ++
Sbjct: 262 WRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDES-AEDIRLILEPKNRTIEPEM 320

Query: 323 ILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++  L++ + L+  F +NM  L+    P    L   L+AF+  R EV+ RR+++ + +  
Sbjct: 321 LMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRRSQWRIARVE 380

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R H+L GL I   N+DEV+RI+R    P+     L+ R                     
Sbjct: 381 KRLHLLEGLRIVFLNIDEVIRIVREEEQPKAV---LIAR--------------------- 416

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                  L+EVQ   IL+ RL +L  L    I  E  +L  E+     + SS  +    I
Sbjct: 417 -----FGLTEVQADFILDTRLRQLARLEEMTIEKEFKALSEELAHLQALTSSEGKQWKAI 471

Query: 502 KQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVK 549
            +EL +V+  L +PRRT I + +     +  E  I RE + V +S  G+++
Sbjct: 472 SKELEAVRKALISPRRTTIADAVDTSAFVAPEAFIPREAITVILSERGWIR 522


>gi|171920938|ref|ZP_02932082.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188024134|ref|ZP_02996867.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554590|ref|YP_002284910.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903170|gb|EDT49459.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188019193|gb|EDU57233.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209542091|gb|ACI60320.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 852

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 383/723 (52%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|183508622|ref|ZP_02958127.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676081|gb|EDT87986.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 850

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 387/719 (53%), Gaps = 40/719 (5%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTEARLSKIASVMLANLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNIP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +IR     +       QI+
Sbjct: 200 HPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIRACIDFKINDNKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 ISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISIIIDTKKDINLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+L+  ++   +A+    P    L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINKVDLYDLNKILLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                            
Sbjct: 380 EGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ--------------------------VF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D++NE  +L  E K     ++S       +KQ+++ 
Sbjct: 414 NFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQKRINSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K      R+T++ + L+ +E +ED ++ ++++ + +S  GY+K V    + + +    G
Sbjct: 474 FKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    I+++H  +L  +S   +      ++     +  G+ L N +  +
Sbjct: 534 -----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSMRWKDVGEHLNNYVKFD 588

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE 683
             E++  +  + E +   +   +V A++   ++R +LS+ + IN++ K    MKL+  D 
Sbjct: 589 ANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSE-LDINKNSKQISIMKLNDNDN 646

Query: 684 ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           ++S     + ++  I+  +KLG  + F +  I     R + G++ + L   D+V ++ I
Sbjct: 647 LISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIKIMKLKPNDEVSAILI 704


>gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
 gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
          Length = 770

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 399/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
             + D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKTPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
 gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
          Length = 751

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 256/750 (34%), Positives = 394/750 (52%), Gaps = 74/750 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG  TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN  EV    VA+++ P ++LD +M+ I GPDFPT A I+     I+  Y  GRGS+ +R
Sbjct: 187 HNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDIRKVYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   EK  G+    V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AV--WEKEEGN---AVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++  L+  T L+  + V  NM+ L+  +P    L+ IL  ++ +R +
Sbjct: 302 VIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDN-RPAVKGLVEILNEWIIYRRQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R +N SD 
Sbjct: 361 TVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEPKAV---LMSR-FNISD- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                    Q  AILEL+L  L  L    IR E + L  E  E 
Sbjct: 416 ------------------------TQAEAILELKLRHLAKLEEMKIRGEQDELAKERDEL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S +RL  +IK+E+ +        RR+ +   E    + + + +  E + V +S +
Sbjct: 452 QAILGSEARLNTLIKKEIQADAKAYGDDRRSPLQEREEAKALSEHEILPSEPITVVLSDM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     S +  +  D         ++ + +F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIEPSNLSYKAGDSFKGAARGKSNQAAVFLDSTGRSYSI 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++  PE++        + A+  G      
Sbjct: 560 DPLELP--SARSQGEPLTGKLTLPPGATIEHVLMAPEEQK------YLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
            +D +  N++GK  M L    ++++ +E   ++ D+LL  TK G+ + FP+S +   +  
Sbjct: 612 FNDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLAITKAGRMLLFPVSDLPQLSKG 671

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADA 746
            G   + + G   A G+ ++   +V+   A
Sbjct: 672 KGNKIINITGAQAASGEDLLVWLMVIPPQA 701


>gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
 gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
          Length = 770

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 399/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
             + D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|188024071|ref|ZP_02996816.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867813|ref|ZP_03079813.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551406|ref|ZP_03772352.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188019110|gb|EDU57150.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195660510|gb|EDX53767.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225379221|gb|EEH01586.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 383/723 (52%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9]
 gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9]
          Length = 756

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/720 (34%), Positives = 387/720 (53%), Gaps = 89/720 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN  EV +  V ++DNP  DLD LM  ++GPD+PT A I+  T  +K  YATGRGSI +R
Sbjct: 187 HNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRGSIRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + H  K +GD   IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AIWH--KENGD---IVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F V  NM+ L+G +P    L+ I+  ++ FR  
Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDG-RPRVKGLLEIITEWLVFRRS 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL  A  NLDEV+ IIR   NP+    ELM R       
Sbjct: 361 TVRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENPKA---ELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR+E + L  E    
Sbjct: 411 -------------------FDLSVIQADAILEIKLRQLAKLEEIKIRSEQDELAKERDYL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+ +  ++    RR+ +VE      + + D I  E + V +S  
Sbjct: 452 DKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDLIPSEAITVVLSEK 511

Query: 546 GYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           G+++        P S+       Y A  RG                      ++   +  
Sbjct: 512 GWIRHAKGYDVDPTSLSYKSGDNYLAHARG---------------------KSNLPAILI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   +DE  W     +  +
Sbjct: 551 GSDGRSYALESHSLP--SARSQGEPVTGRLNLTPGTNLRQVL-MADDEQMW-----LMGS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +  + ++++ +  +    ++IL+ T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEGRMLLFPI 662


>gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703]
          Length = 758

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 387/727 (53%), Gaps = 81/727 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y +GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPTVKGLVEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQR                  
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTEREEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFMDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+L  G  I  ++   +D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTLPPGANIEHVLMAADDQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    + L        +D+LL+ T  G+ + FP++            +  +S  K
Sbjct: 623 KTMITLPENAKALPPLEIYGSDDMLLSITAAGRMLMFPVA-----------DLPELSKGK 671

Query: 732 GDQVISM 738
           G++++S+
Sbjct: 672 GNKIVSI 678


>gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
 gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
          Length = 750

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 252/708 (35%), Positives = 374/708 (52%), Gaps = 70/708 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 19  ERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAMSELGLSAAAKYKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+AA Y+A+  MAQ ++ R  LI+GQGN+GS D DP   AA RYTE RL   A  LL
Sbjct: 79  HPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSPD-DPKSFAAMRYTEARLTPYARVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           ++LG+ TV++ PN+DG+ QEP  L AR PNVL+NGG GIAVGMAT+IP HNL EVVD CV
Sbjct: 138 NELGQGTVEWIPNFDGALQEPERLPARLPNVLLNGGSGIAVGMATDIPPHNLREVVDACV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++D P+     L E +  PDFPT + VI  R  ++  Y  G G++  R     E+   +
Sbjct: 198 HLLDRPEATTAELCEHVPAPDFPTASDVITPREELRTIYERGHGTVRARARWEYER---E 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK-RGASA 320
           + QIV+  +PYQV  A ++E+IA  ++ +++  + DLRDESD     R+V++L+ R    
Sbjct: 255 QAQIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVEDLRDESDHDAPVRIVVQLRSRRQDP 314

Query: 321 DVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +++ L+  T L+  + V  N++ L+G +P  F+L  +L  +++FR E V RR  + L 
Sbjct: 315 ERVMDHLFATTDLERGYRVHLNVIGLDG-RPRVFSLRDLLAEWLSFRTETVRRRLTWRLE 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR H+L GL  A  N+DEV+ IIR    P+     LM+R                  
Sbjct: 374 KVEDRLHILEGLLTAYLNIDEVIAIIREEDEPKPV---LMER------------------ 412

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q  AILELRL  L  L    IR E   L  E  E    L   +RL 
Sbjct: 413 --------FGLSDAQAEAILELRLRHLARLEEMKIRGEQGDLERERDELRATLGDAARLR 464

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
             +K ELL   +     RR+ +V+      M++ + +  E + V +S  G+V        
Sbjct: 465 EQVKSELLGDAEAHGDERRSPLVQRGPARAMDETELMPSEPVTVVLSEKGWV-------- 516

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     +G+  +  D   D  +  ++   +F  S G  Y      LP  S +
Sbjct: 517 ----RAAKGHEVDATGLSYKAGDGYLDHALGRSNQPAIFLDSTGRAYAVPAHTLP--SAR 570

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++G+ L   L+  +  R  +++   + ES W     + A+  G   R  L +    NRSG
Sbjct: 571 SQGEPLTKRLTPPEKARFQSVLAG-DSESRW-----LLASDAGYGFRVPLRELFSRNRSG 624

Query: 673 KIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFA 717
           K  + L     +L   T   E D   +++ +  G+ + FP+  +   A
Sbjct: 625 KAVLTLPDGAAVLPPVTVPAEADGAEVVVASSDGRLLVFPLEELPEMA 672


>gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
 gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M]
 gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
          Length = 775

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 317 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 375

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 376 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 435

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 436 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 466

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 467 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 526

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 527 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 578

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 579 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 634

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 635 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 689

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 690 GENRKMLVFPLSDI 703


>gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
 gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
          Length = 762

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 258/746 (34%), Positives = 405/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
 gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
          Length = 759

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/741 (34%), Positives = 404/741 (54%), Gaps = 82/741 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G   +++ D  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++G++ + KY 
Sbjct: 8   EDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGLKASAKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 68  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LL ++ + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+I
Sbjct: 127 TESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
             HNL EV   CV ++DNP  DLD + EI+ GPD PT A +I  R  +K  Y TGRGS+ 
Sbjct: 187 LPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYETGRGSVR 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V   E+      +I++T +P+QV+ A +LE+IA  +++K++  ++DLRDESD +   
Sbjct: 247 MRAVYTKEQG-----EIIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDESDHENPT 301

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFR 365
            ++ + R    DV  ++  L+  T L+  + V  NM+ ++G KP+   L  IL  ++++R
Sbjct: 302 RLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDG-KPQVKDLRQILVEWLSWR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+V +R  + L K  DR H+L GL +A  N+DEV+ IIR   +P+    EL++R     
Sbjct: 361 TEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDPKA---ELIKR----- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q  AIL+L+L  L  L    I++E N L  E K
Sbjct: 413 ---------------------FGLTEIQADAILDLKLRHLAKLEEFKIQSEQNELEEERK 451

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           +   IL S +++  +IK+E+    +E    RR+ IV  E      ++D +  + + V +S
Sbjct: 452 KLEGILGSDAKMRKLIKKEIQDAAEEYGDDRRSPIVEREEAQAFSEKDLLSSDPVTVVIS 511

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G++            R  KG      G+  +  D         T+   +   + G  +
Sbjct: 512 KQGWI------------RAAKGHEIDAVGLNYKSGDAFKLACKGRTNQPTILLDTTGRSF 559

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP  S + +G+ +   ++L +G  I   +   + +       ++ A+  G    
Sbjct: 560 TIETHNLP--SARGQGEPVTGRITLPKGSTIDAAVAGKDADK------ILMASDAGYGFV 611

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
            K+SD     ++GK A+ L     I+S ++  T E D+L   T  G+ + FP+S +   A
Sbjct: 612 AKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAAVTNEGRLLVFPVSELPELA 671

Query: 718 GRNSVGVRGISLAKGDQVISM 738
                  RG    KG+++I++
Sbjct: 672 -------RG----KGNKIINI 681


>gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
 gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
          Length = 775

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 317 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 375

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 376 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 435

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 436 DEP---KQELMR--------------------------VFELTDVQAESILNMRLRSLRK 466

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 467 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 526

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 527 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 578

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 579 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 634

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 635 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 689

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 690 GENRKMLVFPLSDI 703


>gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
 gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
          Length = 761

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 258/746 (34%), Positives = 405/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               DL D                +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 ---FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 744

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/508 (41%), Positives = 306/508 (60%), Gaps = 30/508 (5%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+ E     I +  +++ +   YL YA++ I  RA+PD+RDGLKPV RRIL+GM  + ++
Sbjct: 4   STAEPPADRIINEPMSEALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGMRVLRLD 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
               Y KCA+I G+VMG YHPHG+++IYD L R+AQD+++R  L++GQGNFG++DGD  A
Sbjct: 64  PEGGYRKCAKIVGDVMGNYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNIDGDSAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ + A  L++ L ++ VDFRPNY  + +EPVVL A +PN+L NG  GIAVGM
Sbjct: 124 AYRYTEARMTRGAELLMEGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGATGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGR 245
           AT+IP HN+ E++D    +I+ P    + LME ++GPDFPTG VI+  R  +  AY TGR
Sbjct: 184 ATSIPPHNVAEIIDAARHLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLEAYETGR 243

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  +R   H+E T     QI+VTEIPYQV K+ +LEK++EL+  K++  + D+RDES  
Sbjct: 244 GAFRMRARWHVEDTGRGTYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDVRDESAE 303

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               V++   +    DV++  L+R   L++ FS+NM  L+   P+   L  +L+A++  R
Sbjct: 304 DVRLVLVPRAKTVEPDVLMESLFRTCDLETRFSLNMNVLHKGAPQVMGLRDVLQAYLDHR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVVVRR ++ L+K   R H+L G   A  N+DEV+RIIR    P+     LM+R     
Sbjct: 364 REVVVRRAEFRLDKIEKRLHILEGFLKAYLNIDEVIRIIRTEDEPKPV---LMKR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +S++Q  AIL LRL  L  L   +I+ E   L  E  
Sbjct: 416 ---------------------FKISDIQAEAILNLRLRALRKLEEMEIQGEHTKLTEERD 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELD 513
           E + ++ S  R    + +EL + +DE D
Sbjct: 455 ELVLLIGSVRRQWTRVSKELKAARDEFD 482


>gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM
           4541]
 gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541]
          Length = 751

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/746 (33%), Positives = 392/746 (52%), Gaps = 74/746 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +L   TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN  EV    VA+++ P ++LD +M+ I GPD+PT A I+     I+  Y  GRGS+ +R
Sbjct: 187 HNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   EK  G+    V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AV--WEKEDGN---AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++  L+  T L+  + V  NM+ L+  +P    L+ IL  ++ +R +
Sbjct: 302 VIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDN-RPSVKGLVEILNEWITYRRQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPKPV---LMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE Q  AILEL+L  L  L    IR E + L  E  E 
Sbjct: 411 -------------------FNISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDEL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S +RL  +IK+E+ +        RR+ +   E    + + + +  E + V +S +
Sbjct: 452 QAILGSEARLNTLIKKEIQADAKAYGDDRRSPLQEREEAKALSEHEILPSEPITVVLSDM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     S +  +  D   +     ++ + +F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIEPSNLSYKAGDSFKEAARGKSNQAAVFLDSTGRSYSV 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++  PE++        + A+  G      
Sbjct: 560 DPLELP--SARSQGEPLTGKLTLPPGATIEHVLMAPEEQK------YLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
            +D +  N++GK  + L    ++LS +E   ++ D+LL  TK G+ + FP+S +   +  
Sbjct: 612 FNDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLAITKAGRMLLFPVSNLPQLSKG 671

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVL 742
            G   + + G   A G+ ++   +V+
Sbjct: 672 KGNKIINITGAQAASGEDLLVWLMVV 697


>gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 775

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 317 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 375

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 376 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 435

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 436 DEP---KQELMR--------------------------VFELTDVQAESILNMRLRSLRK 466

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 467 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 526

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 527 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 578

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 579 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 634

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 635 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 689

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 690 GENRKMLVFPLSDI 703


>gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 758

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 387/727 (53%), Gaps = 81/727 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y +GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPTVKGLVEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQR                  
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTEREEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFMDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+L  G  I  ++   +D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTLPPGANIEHVLMAADDQK------LLMASDVGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    + L        +D+LL+ T  G+ + FP++ +             +S  K
Sbjct: 623 KTMITLPENAKALPPLEIYGSDDMLLSITAAGRMLMFPVADL-----------PELSKGK 671

Query: 732 GDQVISM 738
           G++++S+
Sbjct: 672 GNKIVSI 678


>gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
 gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
          Length = 755

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 251/734 (34%), Positives = 387/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPSVKGLLEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQ                   
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ + E      M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  P+D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L    + L+       +D+LL+ T  G+ + FP++ +   +   G   V +    
Sbjct: 623 KTMITLPENAKALTPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKGNKIVSIPSAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  ++   VL
Sbjct: 683 AAAGEDRLAWLFVL 696


>gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
 gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
          Length = 757

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 256/745 (34%), Positives = 393/745 (52%), Gaps = 73/745 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R
Sbjct: 187 HNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AIWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+  +P+   L+ IL  ++AFR +
Sbjct: 302 VIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDN-RPQVKGLVEILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LMQR       
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S+ Q  AILEL+L  L  L    IR E + L  E    
Sbjct: 411 -------------------FGISDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDHL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  +L  +IK+E+ +        RR+ I E      M + D +  E + + +S +
Sbjct: 452 QALLASERKLNTLIKKEIQADAQAYGDDRRSPITERAEAKAMSEHDFVPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  +  D         T+  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPSGLSYKAGDSYRSAARGKTNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G      
Sbjct: 560 DPLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA--- 717
            +D +  NR+GK  + L    + L+      ++D+LL+ T  G+ + FP++ +   +   
Sbjct: 612 FNDLVARNRAGKAMITLPDNAKALAPMEIHGDDDMLLSITAAGRMLLFPVADLPQLSKGK 671

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
           G   V +     A G+  ++   VL
Sbjct: 672 GNKIVSIPAAQAASGEDKLTWLFVL 696


>gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 736

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 260/744 (34%), Positives = 396/744 (53%), Gaps = 68/744 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KCA
Sbjct: 8   IEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTAGFKKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTESRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+ + +D+VDFRP YDG   EPVVL A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 128 TAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHNV 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           GE+    +A+I  P      L+  + GPDFPTG  I+  R  I  AY TGRGS  IR   
Sbjct: 188 GEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSFRIRSKW 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+      QIVVTEIPYQV K+ ++E++A+L+ +K++  +AD+RDES     R+V+E 
Sbjct: 248 DVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTTD-IRLVLEP 306

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K RG    V++  L+R T L+S F +NM  L   + P   +L  +L+A++  R +V++RR
Sbjct: 307 KSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLLRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +   L     R  +L G      NLDEV+RI+R   + ++A                LI 
Sbjct: 367 SANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSA----------------LIA 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             D             L+E+Q  ++L +RL  L  L   +IRNE   L  E +   D+L 
Sbjct: 411 AFD-------------LTELQADSVLNMRLRSLRRLEEMEIRNEHARLSAEKQALHDLLE 457

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLG 546
           +  +    I  E+  ++          RR+ + +    +D+E    + R+ + V +S  G
Sbjct: 458 NEGQRWKHIAGEIKDIQKTFGGGTLGKRRSLLADAPVEIDVEAALPVERDPLTVILSQKG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++ V        R  G+    +  ++ D +       ++  +  F++ G  +  +V  L
Sbjct: 518 WIRTV--------RGHGQDPQALKFKEGDDLGMAVECHSNDRLCVFATDGRAFTLRVADL 569

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L+  E I T+  FP D++       + A+  G       S   
Sbjct: 570 PRG--RGDGQPLRLLIDLSNDEDIITM--FPLDDARRR----LLASSTGRGMIVAESAMT 621

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVR---FPISAIRVFAGRNSV 722
              R+G+  + L  R+  L    C   E D +L   LGQ  R   FP+  +   A    +
Sbjct: 622 AEKRTGRQVLNLKDRESAL---ICVPAEGDHVLV--LGQNRRMLVFPLDQLPEMA--RGL 674

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV  I     D  +  A+V  ADA
Sbjct: 675 GV--ILQKYKDGGLKDAVVFTADA 696


>gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
 gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
          Length = 751

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/749 (33%), Positives = 395/749 (52%), Gaps = 72/749 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG  TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV    VA++D P ++LD +M  + GPDFPT A +I  R  I+  Y  GRGS+ +R
Sbjct: 187 HNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   EK  G+    V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ +    +
Sbjct: 247 AV--WEKEDGN---AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESNHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++  L+  T L+  + V  NM+ L+  +P    L+ IL  ++A+R +
Sbjct: 302 VIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDN-RPAVKGLVEILNEWIAYRRQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R +N SD 
Sbjct: 361 TVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKAV---LMSR-FNISD- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                    Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 416 ------------------------TQAEAILELKLRHLAKLEEMKIRGEQDELAKERDDL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+ +   +    RR+ +   E    M + + +  E + V +S +
Sbjct: 452 QAILGSERRLNTLIKKEIQADAKDYGDDRRSPLHEREEAKAMSEHEILPSEPITVVLSDM 511

Query: 546 GYVKRVP---LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+V+      +       + G G  G                ++ + +F  + G  Y   
Sbjct: 512 GWVRSAKGHDIEPTNLNYKAGDGFKGAARG-----------KSNQAAVFLDTTGRSYSVD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   L+L  G  I  ++  P+++        + A+  G       
Sbjct: 561 PLELP--SARSQGEPLTGKLTLPPGATIEHVLMAPDEQK------YLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA--- 717
           +D +  N++GK  + L    ++L+ +E   ++ D+LL  TK G+ + FP++ +   +   
Sbjct: 613 NDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLAITKAGRMLIFPVADLPQLSKGK 672

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA 746
           G   + + G   A GD +++  ++L   A
Sbjct: 673 GNKIINIAGTQAATGDDLLTWLMILPVGA 701


>gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 755

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 256/741 (34%), Positives = 393/741 (53%), Gaps = 86/741 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 8   GVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EVV+  V ++D P   LD LME ++GPD+PT A +I     I+  Y  GRGS+ +R
Sbjct: 187 HNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V    K  G+   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AV--WSKEDGN---VVITALPHQVSGAKVLEQIANQMRAKKLPMVDDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  + V  NM+ L+  +P    L+ IL  ++ FR E
Sbjct: 302 VIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDN-RPTVKGLVEILSEWLVFRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V +R  + L K   R HVL GL IA  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPKPV---LMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE QT AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGLSETQTEAILELKLRHLAKLEEVKIRGEQSELAKERDKL 451

Query: 488 LDILSSRSRLLGIIKQELL----SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             ILSS  +L  ++K+E++    +  DE  +P R R  +    M + D    E + + +S
Sbjct: 452 QAILSSERKLNTLLKKEIMADAATYGDERRSPMRER--DEAKAMSEHDITPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +G+V            R  KG     +G+  +  D         ++  V+F  + G  Y
Sbjct: 510 EMGWV------------RSAKGHDIDPAGLNYKAGDSFRGAARGKSNQPVVFIDTTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L++  G  +  ++  P+++       +V    +G +  
Sbjct: 558 SLDPRDLP--SARGQGEPLTGKLTVPAGATVEHVLMAPDEQ----QFLMVSDAGYGFI-- 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
              SD +  NR+GK  + L     +++ +E    ++D+LL  T+ G+ + FP++ +    
Sbjct: 610 CTFSDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLAITRAGRMLMFPVADL---- 665

Query: 718 GRNSVGVRGISLAKGDQVISM 738
                    +S  KG+++IS+
Sbjct: 666 -------PQLSKGKGNKIISV 679


>gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 770

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 247/725 (34%), Positives = 397/725 (54%), Gaps = 75/725 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II + +    GI  + +    + SYL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSQEIIINKD----GIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP +L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMAT+IP HN+ EV + C  ++DN   +L  L+  ++GPD+PT A +I  ++ I
Sbjct: 176 ITGIAVGMATDIPPHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V + E  +GD   I++T +P+Q +   +LE+IA  ++ K++  ++
Sbjct: 236 RKMYETGRGSIKMRAVYYEE--AGD---IIITALPHQASGGKILEQIAAQMQAKKLPMVS 290

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFT 353
           DLRDESD +    ++   R    DV  ++  L+  T L+  +  ++NM+ L+G +P+   
Sbjct: 291 DLRDESDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDG-RPQVKD 349

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++ FR++ VVRR ++ L+K   R H+L GL IA  N+DEV+RIIR+   P+  
Sbjct: 350 LRMILSEWLVFRKDTVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQV 409

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                           L+D             T  LS++Q  AILEL+L  L  L    I
Sbjct: 410 ----------------LMD-------------TFSLSDIQAEAILELKLRHLAKLEEMKI 440

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E ++L  E  E   IL S  RL  +IK+E+L+  +     RR+ I+E      + +++
Sbjct: 441 KGEQDALAKERDELQLILGSDRRLKTLIKKEILAAAELYGDDRRSPIIERSESKALTEKE 500

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THT 587
            I  E + V +S  G+             R  KG    V+       D ++ S    ++ 
Sbjct: 501 LIPSEPVTVVLSEKGWA------------RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQ 548

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             +F  + G  +      LP  S +++G+ +    S+  GE +  ++   +DE  +    
Sbjct: 549 QAVFMDTSGRAFSCDAHVLP--SARSQGEPITGRFSIVSGETVEHVV-MGQDEQQY---- 601

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQC 705
            + A+  G     K +D I  NR+GK  + L    +++S +       +  L  +  G+ 
Sbjct: 602 -LIASDAGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSDWCLAISNEGRM 660

Query: 706 VRFPI 710
           + FP+
Sbjct: 661 LMFPL 665


>gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
          Length = 770

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------VFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|145642255|ref|ZP_01797821.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273060|gb|EDK12940.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 566

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/584 (40%), Positives = 344/584 (58%), Gaps = 42/584 (7%)

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++LN LY  T +Q  F +NMVAL+  +P  F L  I+++FV  R EVV RR+ + L KAR
Sbjct: 1   MVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKAR 60

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN-ASDIKDLIDLI---DDS 437
           +R H+L GLA+A +N+DE++ IIR S N E A   +  RSW   SDI +L+D+    D+ 
Sbjct: 61  ERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDEL 120

Query: 438 SYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
              +G  G  Y LS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  R
Sbjct: 121 EENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAER 180

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I++EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y
Sbjct: 181 LMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDY 240

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+
Sbjct: 241 EAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGR 300

Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            ++NIL L + ERIT I+P   + ED+      +VV AT  G V++  L++F +   +G 
Sbjct: 301 PIVNILPLQENERITAILPVSAYEEDK------FVVMATAGGIVKKIALTEFSRPRSNGI 354

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI LA   
Sbjct: 355 IALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA--- 410

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                   L  D   DE                 + E+I+    ++S++ NI +     +
Sbjct: 411 --------LTNDISDDESAV--------------EIEDISDDNAEASLDLNIDKVVSLVV 448

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V + DQI
Sbjct: 449 PKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQI 506

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+ER+
Sbjct: 507 MLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLERV 550


>gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330]
 gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365]
 gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445]
 gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457]
 gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330]
 gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365]
 gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445]
 gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457]
 gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28]
 gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90]
          Length = 770

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus
           2308]
 gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase
           IV, subunit A:DNA gyrase C-terminal repeat,
           beta-propeller [Brucella melitensis biovar Abortus 2308]
 gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 770

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------VFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
          Length = 770

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 398/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|162950918|gb|ABY21498.1| ParC [Shigella boydii]
          Length = 657

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/701 (34%), Positives = 374/701 (53%), Gaps = 74/701 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPI 710
           +GK  + L     ++        +D+LL  T+ G+ + FP+
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657


>gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri]
          Length = 657

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 245/701 (34%), Positives = 374/701 (53%), Gaps = 74/701 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L 
Sbjct: 309 DQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R                  
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 407 --------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        
Sbjct: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPI 710
           +GK  + L     ++        +D+LL  T+ G+ + FP+
Sbjct: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657


>gi|188518298|ref|ZP_03003819.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195867504|ref|ZP_03079507.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551137|ref|ZP_03772083.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998129|gb|EDU67226.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660748|gb|EDX54002.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378952|gb|EEH01317.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 384/723 (53%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEVKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L+  L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|188518293|ref|ZP_03003816.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998204|gb|EDU67301.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 852

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 384/723 (53%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEVKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L+  L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
 gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
          Length = 752

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 252/726 (34%), Positives = 383/726 (52%), Gaps = 77/726 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  EKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYADVLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ EV    +
Sbjct: 134 GELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDIPPHNVREVAQAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD +++I++GPD+PT A +I  R  I+  Y +GRGS+ +R V   E  +  
Sbjct: 194 ALIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+  +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPSVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+     LM R                  
Sbjct: 368 KVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E N L  E  +   IL+S  ++ 
Sbjct: 407 --------FAISETQAEAILELKLRHLAKLEEMKIRGEQNDLEKERDQIQAILASERKMN 458

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  +     RR+ +   E    M + D +  E + + +S + +V        
Sbjct: 459 NLLKKELQADAEAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMSWV-------- 510

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 511 ----RSAKGHDIDAKGLSYKAGDSWKASVKGKSNQPVVFIDSTGRSYAID----PITLPS 562

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+L  G  +  ++    DE       ++ A+  G       SD +  NR
Sbjct: 563 ARGQGEPLTGKLTLPPGATVDHML-MEGDEQK-----LLMASDAGYGFVCTFSDLVARNR 616

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRG 726
           +GK  + L     ++       E+D+LL  T  G+ + FP+S +   +   G   +G+  
Sbjct: 617 AGKALITLPENARVMPPLVIEDESDMLLAITSAGRMLMFPVSDLPQLSKGKGNKIIGIPT 676

Query: 727 ISLAKG 732
              A G
Sbjct: 677 ADAANG 682


>gi|185179130|ref|ZP_02964849.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184208968|gb|EDU06011.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 852

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 383/723 (52%), Gaps = 46/723 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEVKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             +  Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++ 
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIE 473

Query: 508 VKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G
Sbjct: 474 FKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG 533

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +
Sbjct: 534 -----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFD 588

Query: 626 QGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
             E++  +      F  DE       +V  +K   ++R +L++      S +I+ MKL+ 
Sbjct: 589 ANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIMKLNE 643

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSI 702

Query: 739 AIV 741
            IV
Sbjct: 703 LIV 705


>gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
 gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
          Length = 742

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 254/734 (34%), Positives = 390/734 (53%), Gaps = 71/734 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   S+    + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++G++   K+ K
Sbjct: 9   EGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKSTAKHKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  L++GQGN+GSVD DP   AA RYT
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSVD-DPKSFAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K +  LL++  + TVD+ PN+DGS  EP VL AR P+VL+NG  GIAVGMAT+IP
Sbjct: 128 EAKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGTSGIAVGMATDIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK-NAYATGRGSIVI 250
            HNL EVV+ CVA++DN ++    L E + GPD+P  A+++     +   Y TG GSI  
Sbjct: 188 PHNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYETGSGSIRQ 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R    +E+       +V+  +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R
Sbjct: 248 RANYFVEEGV----NVVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDESDHENPIR 303

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           +V+EL+ +    +  +  L+  T L+  + VN+  + LNG +P+  +L  +L  ++ +R 
Sbjct: 304 LVVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNG-RPQVKSLKTMLTEWLVYRT 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+     LM+R      
Sbjct: 363 ETVRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKPKPV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  A+LEL+L +L  L    IR E   L  E K+
Sbjct: 414 --------------------FGLSDTQAEAVLELKLRQLAKLEEMRIRGEQEELEAERKK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSH 544
              IL S +R+  ++K+ELLS  +     RR+ + +      M ++D +  E + V +S 
Sbjct: 454 IEKILGSAARMKTLVKKELLSDAEAYGDDRRSPLSDAKQAQAMSEQDLLPSESITVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V+        A+     GR+      + F +     S   SV F    G  Y     
Sbjct: 514 NGWVR-------AAKGHDVDGRTLGYKSGDAFCSQALGQSRQLSV-FLDDTGRAYSLPAH 565

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S ++ G+ L   LS   G +   +M     E        V A+  G     +L +
Sbjct: 566 SLP--SARSHGEPLTGRLSPASGAKFKQVMLGQPKEQ------YVLASSAGYGFITELEN 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               N++GK A+ L    E+L+      EN +++ T   + + F +S + V         
Sbjct: 618 LYSKNKAGKAAISLPKGSELLAPARVEAENWVMVVTDEPRMLVFEMSELPV--------- 668

Query: 725 RGISLAKGDQVISM 738
             +S  KG++++ M
Sbjct: 669 --LSKGKGNKLMQM 680


>gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218]
          Length = 757

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/742 (33%), Positives = 401/742 (54%), Gaps = 66/742 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP   L  LM+ ++GPD+PT A I+  +  ++  Y TGRGS+ +R
Sbjct: 188 HNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGRGSVKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVSILSEWIQFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S++Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FGISDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+EL +  ++    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNTLLKKELKADAEKYGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         +    K         ++++      S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHEVDCESLNYKA-------GDNYLAHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K +D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGTDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    EI++ +     + ++IL  T  G+ + FPI  +          
Sbjct: 617 LSKNRSGKALVNLPENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLGKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVL 742
           +  I  AK    ++V+S  + L
Sbjct: 677 IINIPAAKAKAREEVVSHLMAL 698


>gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 748

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 246/747 (32%), Positives = 399/747 (53%), Gaps = 74/747 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++ +++GPD+PT A +I  +  I   Y  GRGSI +
Sbjct: 187 PHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E+      +IV++ +P+Q + + ++E++A  +R K++  + D+RDESD +   R
Sbjct: 247 RAVWKKEEG-----EIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           +VI  +      D +++ L+  T L+  + V  NM+ L+G KP    L+ IL  +++FR 
Sbjct: 302 IVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLLTILNEWLSFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R ++L GL IA  N+DEV+ IIR   N +  + ELM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIR---NEDEPKAELMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ  AIL LRL  L  L    ++ E + L  E  E
Sbjct: 412 --------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPIEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYK 600
            G+V            R  KG    V        D ++      ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L +G  +  ++       + +   V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPEGATVQQVL------MANSETKVLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   + 
Sbjct: 612 TFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALSK 671

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   + +   +   GD+ ++  +V+
Sbjct: 672 GKGNKIINISAAAAKSGDEYLARLLVI 698


>gi|45386065|gb|AAS59850.1| GyrM [uncultured bacterium]
          Length = 306

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/298 (58%), Positives = 228/298 (76%), Gaps = 1/298 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM +     + Y KCA
Sbjct: 10  IVKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMGINNVSTQPYKKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++++Y AL RMAQ+W++R  L++GQG FGSVDGD PAA RYTECRL
Sbjct: 70  RVVGEVLGKYHPHGDSSVYGALGRMAQEWNMRYTLVDGQGTFGSVDGDSPAAMRYTECRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K    ++DDL K+TVD   N+D S  EP V+  + PN+LVNGG GIAVGMATN+PTHNL
Sbjct: 130 SKMGEHIMDDLDKETVDMVNNFDDSLVEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGC A IDNPDID D LM+ I GPDFPTGA I G  G+++AY TGRG IV+R  + 
Sbjct: 190 GEVIDGCCAYIDNPDIDTDGLMQYIPGPDFPTGAYIYGLAGVRDAYETGRGRIVMRAKAE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           IE T    ++IVVTEIPY VNKA +++ IA+L  E +I  +A++ DES RQG R+V++
Sbjct: 250 IESTE-THDKIVVTEIPYGVNKADLVKYIADLANEHKIEGVANVNDESGRQGMRIVVD 306


>gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009]
 gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009]
          Length = 753

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/645 (35%), Positives = 356/645 (55%), Gaps = 54/645 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FR NYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVT+IP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+VIE K R     +++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR++Y   +   R  VL G  IA  N+D+V++IIR    P    + +
Sbjct: 357 LREWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEP----KPV 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + +++N                         L+E+Q  AIL +RL  L  L   +IR E 
Sbjct: 413 LMKAFN-------------------------LTEIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMED 529
            +L  E+K    +L S +     + +++  V++     TP   RRT+  +     L   +
Sbjct: 448 KNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V+ +   V        +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWVRTLKGHV--------EDLSGLNFKQDDKLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           L  ++ G  Y   V +LP G  +  G+ +   + + Q   I T+ 
Sbjct: 560 LLLATNGRFYALDVAKLPGG--RGHGEPIRMFIDMEQDAAIVTVF 602


>gi|330953529|gb|EGH53789.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 645

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/655 (35%), Positives = 352/655 (53%), Gaps = 102/655 (15%)

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           EK++  I +LRDESD+ G RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P
Sbjct: 1   EKKLEGITELRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRP 60

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
               L  +L+AFV  R EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP 
Sbjct: 61  RILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPT 120

Query: 410 PETARRELMQRSWNASDIKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILEL 460
           P  A+  L++  W +S + ++++            D  Y +  +G  +LS  Q +AILEL
Sbjct: 121 PAEAKEALIKTPWESSAVVEMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILEL 179

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL RLTGL  + +  E   +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I
Sbjct: 180 RLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEI 239

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           ++  LD+   D I  E+ VVT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L
Sbjct: 240 LDARLDLTLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHL 299

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF---- 636
            + ++HT++L FSS G VY  K + +P  S  ARG+ L+N+L L+ GE ITT++P     
Sbjct: 300 LVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEA 359

Query: 637 ------------------PEDESSWNN--------------LYVVFATKHGNVRRNKLSD 664
                              E+ S                   ++  +T +G V++  L  
Sbjct: 360 MRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVA 419

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA++LD  D ++S      E +I+L +  G+  RF  S +R   GR + GV
Sbjct: 420 FSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGV 478

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G ++ISM                                              
Sbjct: 479 RGMRLPEGQKLISML--------------------------------------------- 493

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV  
Sbjct: 494 IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGA 543

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V D ++I+L+SD+GTL+R  V E+    R  +GV +   A DE++V +ER++E
Sbjct: 544 VQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNPQGVTLIKLASDEKLVGLERVQE 598


>gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 753

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 230/645 (35%), Positives = 356/645 (55%), Gaps = 54/645 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FR NYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVT+IP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+VIE K R     +++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR++Y   +   R  VL G  IA  N+D+V++IIR    P    + +
Sbjct: 357 LREWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEP----KPV 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + +++N                         L+E+Q  AIL +RL  L  L   +IR E 
Sbjct: 413 LMKAFN-------------------------LTEIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMED 529
            +L  E+K    +L S +     + +++  V++     TP   RRT+  +     L   +
Sbjct: 448 KNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V+ +   V        +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWVRTLKGHV--------EDLSGLNFKQDDKLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           L  ++ G  Y   V +LP G  +  G+ +   + + Q   I T+ 
Sbjct: 560 LLLATNGRFYALDVAKLPGG--RGHGEPIRMFIDMEQDAAIVTVF 602


>gi|209554161|ref|YP_002284902.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541662|gb|ACI59891.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 855

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/727 (31%), Positives = 386/727 (53%), Gaps = 54/727 (7%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y K AR  GEV+GKYHP
Sbjct: 20  SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE RL K A  +L +L 
Sbjct: 80  HGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMRYTETRLSKIASVMLTNLK 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP HN  EV D  +  ID
Sbjct: 140 KDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           +PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR     + +     QI+
Sbjct: 200 HPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIRASIEFKTSEAKINQII 259

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++I+ K+  + + + N L
Sbjct: 260 INSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTKKDVNLENVKNYL 319

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ TSL+  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++
Sbjct: 320 YKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   V  +DE+++IIR S + + A+  L+Q                          T 
Sbjct: 380 EGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TF 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI----IKQ 503
             +  Q  AI+ +RL  LT     D+RNE  SL  + K    IL  R + L +    +KQ
Sbjct: 414 AFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAK----ILKERIKSLQVRKNYLKQ 469

Query: 504 ELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRR 561
           +++  K E    R+T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + + 
Sbjct: 470 KMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKY 529

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
              G     ++  D +    ++++H  +L  +S   +      ++     +  G+ L N 
Sbjct: 530 DELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNY 584

Query: 622 LSLNQGERITTIM----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-M 676
              +  E++  +      F  DE       +V  +K   ++R +L++      S +I+ M
Sbjct: 585 AKFDANEKVVAVYVCNEQFKVDEHQ-----LVLGSKLNLIKRIELNELDLNKNSKQISIM 639

Query: 677 KLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           KL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ + L   D+
Sbjct: 640 KLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDE 698

Query: 735 VISMAIV 741
           + S+ IV
Sbjct: 699 ISSILIV 705


>gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110]
 gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110]
          Length = 751

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/620 (36%), Positives = 347/620 (55%), Gaps = 52/620 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL++ ++GPDFPTG + +  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +VVTEIP+ V K+ ++EKIAEL  +K++  + D+
Sbjct: 238 AYTTGRGSFRVRARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+VIE K +     +++  L+R T L++   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A   L
Sbjct: 357 LREWLDHLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPA---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                             L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 414 MK--------------------------AFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMED 529
            +L  E+K    +L+S +     + +++  V+D     TP   RRT   +     L   +
Sbjct: 448 KNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRRTTFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G+++ +   V        +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVVSDKGWIRTMKGHV--------EDLSGLAFKQDDRLGFAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIG 609
           L F++ G  Y   V +LP G
Sbjct: 560 LLFATNGKFYSLDVAKLPGG 579


>gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW]
 gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum
           SW]
          Length = 757

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 364/674 (54%), Gaps = 65/674 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + +   YL+YA++ I+ R++PD+RDGLKPVHRR+L+ M Q+ +E      K AR+ G+
Sbjct: 13  LAEALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAMSQLRLEPTTPPKKSARVVGD 72

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GK+HPHG+ ++YDAL R+AQ+++ R  L+EGQGNFG++DGD  AA RYTE RL + A 
Sbjct: 73  VIGKFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARLTEVAK 132

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L  + +D  DFRP YDG  +EP+VL A +PN+L NG  GIAVGMATNIP HN+GE+  
Sbjct: 133 AMLAGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSAGIAVGMATNIPPHNVGEICG 192

Query: 201 GCVAVIDN-----PD----IDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
               +I+      PD    + ++ L+  I GPDFPTG V++  R  I  AY TGRG+   
Sbjct: 193 ALNLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVLVESRENILEAYRTGRGAFRT 252

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E  +    QI+VT+IPYQV K+ ++EKIAEL+ EK++  + D+RDES      V
Sbjct: 253 RARWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAEKKLPLLEDVRDESAEDIRLV 312

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPERFTLIGILKAFVAFRE 366
           ++   R    DV++ Q++R T L++ FS+NM  L+    G  P   TL  +L+AF+  R+
Sbjct: 313 LVPKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGGLVPRVMTLYEVLRAFLEHRQ 372

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV++RR+++ L +   R  VL G  IA  N+DEV+RIIR    P   +RELM R      
Sbjct: 373 EVLLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIREEDEP---KRELMAR------ 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ  AIL +RL  L  L   +IR E ++L  E   
Sbjct: 424 --------------------FSLTDVQAEAILNMRLRSLRKLEEFEIRKENDALTKERGV 463

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM--EDEDCIVREDMV 539
            + +L    +    I +E+  +  +         RRT I E   D+    E  I RE + 
Sbjct: 464 LVGLLEDGHKRWKAISKEVAEMDRKFGRTTALGERRTLIGEPPKDLAVPAEAMIEREPVT 523

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+++ V         +  +  +G   +D D    +    T   +L F+  G  Y
Sbjct: 524 VFLSEKGWIRTV------RGHQSAQEVAGTKYKDGDRERFVLHAETTDRLLLFAGSGKFY 577

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
              V RLP G  +  G+ +  ++ L + E +  +   P          +V A+  G   +
Sbjct: 578 TLGVDRLPGG--RGFGEPVRLMVDLGEAEIVALLRHQPGQR-------LVVASADGRGFQ 628

Query: 660 NKLSDFIQINRSGK 673
            +  D +   R+GK
Sbjct: 629 VEADDVVAQTRAGK 642


>gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
 gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
          Length = 762

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 253/746 (33%), Positives = 407/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I   +  I+  Y  GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           V+  K      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++      +     G   +SG     ++++      S   +V FF S G  Y  +   
Sbjct: 513 GWIRHA--KGHDVDAEGLSYKSG-----DNYLAHARGKSNQQAV-FFGSDGRSYSLESHS 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +   L++  G  I  ++   EDE  W     +  +  G     K S+ 
Sbjct: 565 LP--SARSQGEPITGRLNITAGSSIRQVI-MGEDEQLW-----LVGSDAGYGFVCKGSEL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L +  E+++ +T      ++IL  T  G+ + FPI  +   A      
Sbjct: 617 LSKNRSGKALVTLPANSEVMTPKTIADLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  + L   A
Sbjct: 677 IINIPAAKAKEREEVLSHLMALPQGA 702


>gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
 gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
          Length = 751

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 342/610 (56%), Gaps = 51/610 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++ +  +
Sbjct: 9   EPQDIQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPF 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG+VDGD PAA RYT
Sbjct: 69  KKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDNPAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL+ L +D V+FRP YDGS +EPVVL   +PN+L NG  GIAVGMAT+IP
Sbjct: 129 ESRLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQGIAVGMATSIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN  E+ D  + +ID P      L+  ++GPDFPTG +++  +  I  AYATGRG   +
Sbjct: 189 PHNAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAEAYATGRGGFRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E  +     IVVTEIP+ V K+ ++E+IAEL+ EK++  + D+RDES  +  R+
Sbjct: 249 RAKWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDES-AEDIRI 307

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEV 368
           VIE K +    +V++  L++ T L+S   +N+ V + G  P+   L   L+ ++    +V
Sbjct: 308 VIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDV 367

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRR+ +  ++   R  VL G  IA  NLD+V++IIR    P+                 
Sbjct: 368 LVRRSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPV--------------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            LI              T  L+++Q  +IL +RL  L  L   +IR E   L  E+K+  
Sbjct: 413 -LIK-------------TFKLTDIQADSILNMRLRNLRKLEEMEIRGEDKKLRAELKDLK 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP------RRTRIV---EGLLDMEDEDCIVREDMV 539
            +L+S+      + +++  V+ EL  P      RRT+     E  L   +E  I RE + 
Sbjct: 459 AVLASQDEQWKKVGEQVKKVR-ELFGPKTALGKRRTQFADAPEHDLAAIEEALIEREPIT 517

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V VS  G+V+ +   V        +  S +  + +D +   F   T + +L   + G  Y
Sbjct: 518 VVVSDKGWVRTLKGHV--------EDLSNLTFKTDDRLGISFFAETTSKLLLLGTHGRFY 569

Query: 600 KEKVWRLPIG 609
                +LP G
Sbjct: 570 TLDAQKLPGG 579


>gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
 gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
          Length = 757

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/740 (33%), Positives = 391/740 (52%), Gaps = 81/740 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   QDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TV+++PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV    +A+ID P   L+ L++I++GPD+PT A +I  R  I+  Y TGRGSI 
Sbjct: 185 PPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRGSIR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            R V   E+      ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   
Sbjct: 245 QRAVWKKEEG-----EVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENPT 299

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFR 365
            ++ + R    D+  ++N L+  T L+  + V  NM+ L+  +P    L  IL  ++ FR
Sbjct: 300 RLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDN-RPAVKNLHEILTEWLVFR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R     
Sbjct: 359 RDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPKPV---LMSR----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +SE Q  +ILEL+L  L  L    IR E   L  E  
Sbjct: 411 ---------------------FGISETQAESILELKLRHLAKLEEMKIRGEQADLEKERD 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           +    L+S  ++  ++K+EL +        RR+ +   E    + + + +  E + + +S
Sbjct: 450 QLQATLASERKMNTLLKKELQADSASYGDERRSPLCEREEAKALSETELVPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +G+V            R  KG     +G+  +  D         ++  V F  S G  Y
Sbjct: 510 QMGWV------------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G  +  ++  P+D+       ++ A+  G    
Sbjct: 558 TLDPTSLP--SARGQGEPLTGKLTPPPGAVVEQVLMEPDDQR------LLMASDAGYGFI 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAG 718
              SD I  NR+GK  + L     +++      E+D+LL  T+ G+ + FP+  +     
Sbjct: 610 CTFSDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAITQAGRMLMFPVGEL----- 664

Query: 719 RNSVGVRGISLAKGDQVISM 738
                   +S  KG+++IS+
Sbjct: 665 ------PQMSKGKGNKIISI 678


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 244/686 (35%), Positives = 364/686 (53%), Gaps = 63/686 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 15  IQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE ++
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTEAKM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 135 TEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 196 GEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
            E+ D  + +I +PD  L+AL+          I GPDFPTG VI+  RT +  +Y TGRG
Sbjct: 195 HELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIVESRTSMMESYRTGRG 254

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES   
Sbjct: 255 GFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V++   R   A++++  L++ T L+S   +NM  L+ G  P    L  +L  ++A R
Sbjct: 315 VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWLAHR 374

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P+     +++R     
Sbjct: 375 REVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAV---MIER----- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++VQ  AIL +RL  L  L   +IR E ++L  E  
Sbjct: 427 ---------------------FGLTDVQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKA 465

Query: 486 ECLDILSSRSRLLGIIKQELLSVKD------ELDTPRRTRIVEGLLDME--DEDCIVRED 537
           E   +L+S  +    +  E+  VK       EL   R T       D+E   +  I +E 
Sbjct: 466 EIEALLASDDKQWQAVAWEIGEVKKKFAKATELGKRRSTFADAPEADVEAIQQAMIEKEP 525

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +      + +  +D D +   F   T   +L F++ G 
Sbjct: 526 ITVVISEKGWI--------RALKGHIADTTSLQFKDGDALKVSFPAQTTDKILIFTTGGK 577

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY     +LP G  +  G+ L  ++ +   + + T   F  D +      +V ++  GN 
Sbjct: 578 VYTLGSDKLPGG--RGHGEPLRIMVDMENDQDVLTA--FVHDPAR----KLVVSSTAGNG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDE 683
                SD +   R GK  M +   DE
Sbjct: 630 FVVTESDIVANTRKGKQVMNVSMPDE 655


>gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
 gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
          Length = 748

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 351/638 (55%), Gaps = 52/638 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 12  GIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 72  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I N +   + L   ++GPDFPTG +++     I+ AY TGRG   +R  
Sbjct: 192 AAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+RDES  +  RVV+E
Sbjct: 252 WAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDES-AEDVRVVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     +++  L+R + L+S   +N+ V + G  P    L   L+ +V  R  V+ R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R           
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR----------- 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E +    +L
Sbjct: 417 ---------------FELTEVQANAILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLL 461

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
           +S       I +++ +VK     E    RR   +E   D    D     + RE + V +S
Sbjct: 462 ASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTAAMVEREPITVILS 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      SGV  + +D +   F+  T   +L  +S G V+  + 
Sbjct: 522 EKGWI--------RALKGHVADLSGVTFKGDDTLKVAFLSETTAKILLLASNGKVFTIEA 573

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDE 640
            +LP G  +  G  +  ++ L+ G  I   +P+ PE +
Sbjct: 574 SKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK 609


>gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
 gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
          Length = 757

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/727 (34%), Positives = 383/727 (52%), Gaps = 81/727 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYADVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPSVKGLLEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQ                   
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+E+ +        RR+ + E      M D D +  E + + +S +G+V        
Sbjct: 463 TLLKKEIQADAAAYGDDRRSPLKERAEAKAMSDHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     +G+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPTGLNYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  PE +       ++ A+  G       +D I  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEQVLMAPEHQK------LLMASDAGYGFVCTFNDLIAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    + L        +D+LL+ T  G+ + FP++            +  +S  K
Sbjct: 623 KTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVA-----------DLPELSKGK 671

Query: 732 GDQVISM 738
           G++++S+
Sbjct: 672 GNKIVSI 678


>gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 757

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/727 (34%), Positives = 385/727 (52%), Gaps = 81/727 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPSVKGLLEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQ                   
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ + E      M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     +G+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  P+ +       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEQVLMAPDSQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    ++L        +D+LL+ T  G+ + FP++ +             +S  K
Sbjct: 623 KTMITLPENAKVLPPLEIYGPDDMLLSITAAGRMLMFPVADL-----------PELSKGK 671

Query: 732 GDQVISM 738
           G++++S+
Sbjct: 672 GNKIVSI 678


>gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
          Length = 753

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 354/645 (54%), Gaps = 54/645 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +++  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWAQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  RVVIE K R    ++++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDVRVVIEPKSRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+     L
Sbjct: 357 LREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPKPV---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                          T  L+++Q  AIL +RL  L  L   +IR E 
Sbjct: 414 MK--------------------------TFSLTDIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMED 529
            +L  E+K    IL S +     + +++  V++     TP   RRT+  +     L   +
Sbjct: 448 KNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V+ +   V        +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWVRTLKGHV--------EDLSGLNFKQDDRLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           L  ++ G  Y   V +LP G  +  G+ +   + + Q   I  + 
Sbjct: 560 LLLATNGRFYSLDVAKLPGG--RGHGEPIRMFIDMEQDAAIVAVF 602


>gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
 gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
          Length = 761

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 256/746 (34%), Positives = 404/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+ +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FDLTGIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
          Length = 757

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 249/727 (34%), Positives = 385/727 (52%), Gaps = 81/727 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+ ++P    L+ IL  ++ FR + V  R  Y L 
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLD-HRPTVKGLVEILTEWLVFRRQTVRNRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P+     LMQ                   
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ + E      M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  P+D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + L    + L        +D+LL+ T  G+ + FP++ +             +S  K
Sbjct: 623 KTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADL-----------PELSKGK 671

Query: 732 GDQVISM 738
           G++++S+
Sbjct: 672 GNKIVSI 678


>gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           31758]
 gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola]
 gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1]
 gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII]
 gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola]
 gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004]
 gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038]
 gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 757

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/734 (34%), Positives = 387/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L + TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  S  
Sbjct: 198 ALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +++ L+  T L+  +  ++NM+ L+  +P    L+ IL  ++ FR + V  R  + L 
Sbjct: 313 DQVMSHLFATTDLERSYRINMNMIGLDN-RPSVKGLLEILTEWLVFRRQTVRNRLNFRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR   +P+     LMQR                  
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPL---LMQR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FSISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ + E      M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  P+ +       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEHVLMAPDSQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L    ++L        +D+LL+ T +G+ + FP++ +   +   G   V +    
Sbjct: 623 KTMITLPENAKVLPPLEIYGPDDMLLSITAVGRMLMFPVADLPELSKGKGNKIVSIPAAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  ++   VL
Sbjct: 683 AAAGEDRLAWLFVL 696


>gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum
           CM4]
 gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum
           CM4]
          Length = 748

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 351/638 (55%), Gaps = 52/638 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 12  GIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 72  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I N +   + L   ++GPDFPTG +++     I+ AY TGRG   +R  
Sbjct: 192 AAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+RDES  +  RVV+E
Sbjct: 252 WAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDES-AEDVRVVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     +++  L+R + L+S   +N+ V + G  P    L   L+ +V  R  V+ R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R           
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR----------- 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E +    +L
Sbjct: 417 ---------------FELTEVQANAILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLL 461

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
           +S       I +++ +VK     E    RR   +E   D    D     + RE + V +S
Sbjct: 462 ASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTAAMVEREPITVILS 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++ +   V           +GV  + +D +   F+  T   +L  +S G V+  + 
Sbjct: 522 EKGWIRALKGHVTEL--------AGVAFKGDDTLKVAFLSETTAKILLLASNGKVFTLEA 573

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDE 640
            +LP G  +  G  +  ++ L+ G  I   +P+ PE +
Sbjct: 574 SKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK 609


>gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 749

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 260/720 (36%), Positives = 377/720 (52%), Gaps = 71/720 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 20  EKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKSARTVGDVLGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE RL   A  LL
Sbjct: 80  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYTEARLAPYAKLLL 138

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ +EP +L AR PNVL+NGG GIAVGMAT+IP HNL EVV  CV
Sbjct: 139 QELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPPHNLREVVSACV 198

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++D P+ D  ALM  +  PDFPT A +I  +  I+  Y TG G++ +R  +  E+ +GD
Sbjct: 199 HLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMR--ARYERENGD 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              I+VT +PYQV+ + +LE+IA  ++ K++  + DLRDESD +    ++   R    D+
Sbjct: 257 ---IIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRLVITPRSNRVDI 313

Query: 323 --ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++  L+  T L+  + VN+  +AL+G +P    L  +L  ++ FR + V RR  + L 
Sbjct: 314 HRVMEHLFATTDLEKNYRVNLNVIALDG-RPRVLGLRELLLEWLTFRTDTVRRRLNWRLQ 372

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K +DR H+L GL IA  N+DEV+ IIR    P+     LM R                  
Sbjct: 373 KVQDRLHILEGLLIAYLNIDEVIAIIREEDEPKPV---LMAR------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q  AILEL+L  L  L    IR E   L  E  E   IL S  RL 
Sbjct: 412 --------FGLSERQAEAILELKLRHLAKLEEMKIRGEQGDLERERDELQTILGSDERLR 463

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+EL +  ++    RR+ +V       +++ D +  E + V +S  G+V        
Sbjct: 464 ELIKEELRADAEQYGDERRSPLVTRSAARALDETDLMPSEPVTVVLSEKGWV-------- 515

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D   D     ++   +F    G  Y      LP  S +
Sbjct: 516 ----RAAKGHEVDAPGLNYKAGDQYRDHAPGRSNQQAVFLDHTGRSYSLTAHTLP--SAR 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   LS   G R   ++   +  S W     V AT  G      LSD    NRSG
Sbjct: 570 GQGEPLTGRLSPAPGARFEHVL-CGDPASLW-----VLATDAGYGFVCALSDMYAKNRSG 623

Query: 673 KIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  + +     +L+    T +   ++   +  G+ + FP+S +   A      + GI  A
Sbjct: 624 KALLTVPQGARVLAPTPATADEGAELAAVSSGGRLLVFPLSELPRLAKGKGNKIIGIPAA 683


>gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
 gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
          Length = 753

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/683 (36%), Positives = 373/683 (54%), Gaps = 61/683 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+
Sbjct: 20  EKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKF 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL + A  LL
Sbjct: 80  HPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSRYAEVLL 138

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV + CV
Sbjct: 139 AELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEVANACV 198

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNP  DL A+ + I+GPDFPT A +I     I   Y TG GSI +R V + EK    
Sbjct: 199 YLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETGNGSIKMRAVYNQEK---- 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + IV+T +PYQV+ A +LE+IA  +++K++  + DLRDESD +    ++ + R    D+
Sbjct: 255 -QNIVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIVPRSNRVDI 313

Query: 323 --ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +++ L+  T L+  + V  NM+ L+G KP    L+ I+  ++ +R  VV RR +Y L 
Sbjct: 314 EGLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLVEIISEWLVYRISVVRRRLEYRLA 372

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR HVL GL IA  N+DEV+ IIR    P   ++ L+ R +N SD            
Sbjct: 373 KVLDRIHVLEGLLIAYLNIDEVIAIIREHEQP---KQGLIAR-FNISD------------ 416

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                         Q  AILE++L  L  L    +R EL+ L +E      IL+S  RL 
Sbjct: 417 -------------RQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILASEQRLK 463

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+E+ + +DE    RR+ I+  +    +++ED +  E + V +S  G+V        
Sbjct: 464 KLVKEEITNDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKGWV-------- 515

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RA +        +  +  D         ++  +LFF S G VY      LP  S + +G+
Sbjct: 516 RAAKGHDINGCELSFKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLP--SARGQGE 573

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L   L+  +G      +    D+S      V+ A+  G     K+ D    NR+GK  +
Sbjct: 574 PLTGKLNPAEGALFEAAVGGEADQS------VLLASDAGYGFIAKIGDLYVKNRNGKACI 627

Query: 677 KLDSRDEILSVETCTQENDILLT 699
           KL     IL      + +++ + 
Sbjct: 628 KLPETSHILPPRILPKHDELFIA 650


>gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001]
 gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001]
          Length = 748

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/678 (36%), Positives = 366/678 (53%), Gaps = 61/678 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 12  GIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 72  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +DTVDFRP+Y+G  +EPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGV 253
             E+ D  + +I N +   + L   ++GPDFPTG +++     I+ AY TGRG   +R  
Sbjct: 192 AAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIREAYRTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+RDES  +  RVV+E
Sbjct: 252 WAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDES-AEDVRVVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     +++  L+R + L++   +N+ V + G  P    L   L+ +V  R  V+ R
Sbjct: 311 PRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R           
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR----------- 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E +    +L
Sbjct: 417 ---------------FELTEVQANAILDTRLRSLRKLEEMELKREFEALTQEKEGIEALL 461

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
            S       I +++ +VK     E    +R   +E   D    D     + RE + V +S
Sbjct: 462 GSEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTAAMVEREPITVILS 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      SGV  + +D +   F+  T   +L  +S G V+  + 
Sbjct: 522 EKGWI--------RALKGHVADLSGVTFKGDDTLKVSFLSETTAKILLLASNGKVFTIEA 573

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKL 662
            +LP G  +  G  +  ++ L+ G  I   +P+ PE     + L V  +   G +     
Sbjct: 574 SKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPE-----SKLLVAGSDGRGFI---AP 623

Query: 663 SDFIQIN-RSGKIAMKLD 679
           SD +  N R GK  + LD
Sbjct: 624 SDALVANTRKGKAILGLD 641


>gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
 gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
          Length = 757

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 250/734 (34%), Positives = 387/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L + TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R V   E  S  
Sbjct: 198 ALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +++ L+  T L+  +  ++NM+ L+  +P    L+ IL  ++ FR + V  R  + L 
Sbjct: 313 DQVMSHLFATTDLERSYRINMNMIGLDN-RPSVKGLLEILTEWLVFRRQTVRNRLNFRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR   +P+     LMQR                  
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPL---LMQR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L 
Sbjct: 411 --------FSISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ + E      M + D +  E + + +S +G+V        
Sbjct: 463 TLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIAPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++  P+ +       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEHVLMAPDSQK------LLMASDAGYGFVCTFNDLVAKNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L    ++L        +D+LL+ T +G+ + FP++ +   +   G   V +    
Sbjct: 623 KTMITLPENAKVLPPLEIYGPDDMLLSITAVGRMLMFPVADLPELSKGKGNKIVSIPAAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  ++   VL
Sbjct: 683 AAAGEDRLAWLFVL 696


>gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
 gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
          Length = 756

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 247/720 (34%), Positives = 385/720 (53%), Gaps = 89/720 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV +  V ++DNP  DLD LME ++GPD+PT A +I     +K  Y +GRGSI +R
Sbjct: 187 HNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDLKKVYKSGRGSIRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + H  K +GD   IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AIWH--KENGD---IVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++N L+  T L+  F V  NM+ L+G +P    L+ I+  ++ FR  
Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDG-RPRVKGLLEIITEWLVFRRS 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   NP+    ELM R       
Sbjct: 361 TVRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENPKA---ELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR E + L  E    
Sbjct: 411 -------------------FELSVIQADAILEIKLRQLAKLEEIKIRGEQDELAKERDYL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+ +  ++    RR+ +VE      + + D I  E + V +S  
Sbjct: 452 EKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDLIPSEAITVVLSEK 511

Query: 546 GYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           G+++        P S+       Y A  RG                      ++   +  
Sbjct: 512 GWIRHAKGYDVDPTSLSYKSGDNYLAHARG---------------------KSNLPAILI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   +DE  W     +  +
Sbjct: 551 GSDGRSYALESHSLP--SARSQGEPVTGRLNLTPGTNLRQVL-MADDEQMW-----LMGS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +  + ++++ +  +    ++IL+ T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEGRMLLFPI 662


>gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1]
 gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1]
          Length = 748

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 351/638 (55%), Gaps = 52/638 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 12  GIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 72  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I N +   + L   ++GPDFPTG +++     I+ AY TGRG   +R  
Sbjct: 192 AAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+RDES  +  RVV+E
Sbjct: 252 WAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDES-AEDVRVVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     +++  L+R + L+S   +N+ V + G  P    L   L+ +V  R  V+ R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECLREWVDHRRVVLQR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R           
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR----------- 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E +    +L
Sbjct: 417 ---------------FELTEVQANAILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLL 461

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
           +S       I +++ +VK     E    RR   +E   D    D     + RE + V +S
Sbjct: 462 ASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTAAMVEREPITVILS 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++ +   V           +GV  + +D +   F+  T   +L  +S G V+  + 
Sbjct: 522 EKGWIRALKGHVTEL--------AGVAFKGDDTLKVAFLSETTAKILLLASNGKVFTIEA 573

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDE 640
            +LP G  +  G  +  ++ L+ G  I   +P+ PE +
Sbjct: 574 SKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK 609


>gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans]
 gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 260/738 (35%), Positives = 381/738 (51%), Gaps = 73/738 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G  S+++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF M ++G+    K  K 
Sbjct: 16  GGESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFAMNELGLNSAAKPRKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE R
Sbjct: 76  AAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  L++++   TVDF+PNYDGS +EP +L +R P VL+NG  GIAVGMAT IP+HN
Sbjct: 136 LTPIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGASGIAVGMATEIPSHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           L EV    VA+I NP +  + L+ I+ GPDFP G  +I   T I + Y +GRGS+ +R  
Sbjct: 196 LREVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAISDIYRSGRGSVKVRAT 255

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDI 296
             IE  +  + Q VVTE+P+  +   +LE+I EL   K                  ++ +
Sbjct: 256 WKIEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKSLSPEQLALKQTVLAM 315

Query: 297 AD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERF 352
            D +RDES R    R+V E K +        N L  +TSL++  S+N+V + G  KP + 
Sbjct: 316 LDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVSINLVMIGGDGKPRQK 375

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  IL+ +V FR   + RR+++ L K  DR H+L G    + N+D+V++IIR S  P+ 
Sbjct: 376 ALGDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNIDKVIKIIRESDEPKP 435

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A                L+D                LSE Q   ILE+RL +L  L    
Sbjct: 436 A----------------LMD-------------AFRLSERQADDILEIRLRQLARLETIK 466

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ EL  L  E     D+L + S +  ++ +E+ + + +    RRT ++E       E  
Sbjct: 467 IQQELAELRSEKSTLQDLLDNPSSMKRLVIKEIEADEKQFGDKRRT-LIEVAEKAVVETR 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           ++ E + V +S  G+V        RA+   G   +    +  D + D F   T  ++L F
Sbjct: 526 VIDEPVTVVISQKGWV--------RARTGHGHDAAQFTFKASDALYDTFECRTVDTLLVF 577

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G +Y   V  LP    +  G  +  ++ L  G R+      P D      + ++ A+
Sbjct: 578 GSNGRIYSVAVAALP--GARGDGVPITTLVELASGTRVLHYFAGPAD------VTLLLAS 629

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPIS 711
             G     K  D +   RSGK  + LD  DE L+        + I   ++ G+ + F I 
Sbjct: 630 TAGYGFTAKSGDMVSRTRSGKAFITLDEGDEPLTPRPIFAGASAIACLSEKGRVLVFGID 689

Query: 712 AIRVFAGRNSVGVRGISL 729
            I+      + G RG+ L
Sbjct: 690 EIKSL----TAGGRGVIL 703


>gi|218658940|ref|ZP_03514870.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 223

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 169/222 (76%), Positives = 200/222 (90%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TG
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETG 223


>gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 751

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 241/709 (33%), Positives = 379/709 (53%), Gaps = 68/709 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 9   EGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+VD DP   AA RYT
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVD-DPKSFAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 128 ESRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD L+ +++GPDFPT A +I  +  I+  Y  GRGSI +
Sbjct: 188 PHNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKM 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +IV++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 248 RAT--WKKEDG---EIVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVR 302

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R    D+  ++  L+  T L+  + VNM  +   +KP    L+ IL  +++FR  
Sbjct: 303 IVLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRT 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK   R H+L GL IA  N+DEV+ IIR+   P   + ELM R       
Sbjct: 363 TVTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEP---KAELMAR------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L   +++ E   L  E    
Sbjct: 413 -------------------FNLSDEQAEAILNLRLRHLAKLEEHELQAEQAELEKERSSL 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
            +IL S  RL  ++K+E+        +PRR+ +VE      + + + +  E + V +S +
Sbjct: 454 EEILGSERRLNTLLKKEIQQDAKIYASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEM 513

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG      G+  +  D         ++ + +F  S G  Y  
Sbjct: 514 GWV------------RCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGRSYAL 561

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   ED+       ++ A+  G     K
Sbjct: 562 DPLTLP--SARSQGEPLTGKLTLPAGATIDQLLIENEDQP------LLMASDAGYGFICK 613

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFP 709
            +D I  N++GK  + L    ++L   T      +L+  T  G+ + FP
Sbjct: 614 FADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFP 662


>gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840]
 gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840]
          Length = 775

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 252/734 (34%), Positives = 397/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 317 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 375

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +      +L G  IA  NLDEV+RIIR  
Sbjct: 376 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYLNLDEVIRIIREE 435

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 436 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 466

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 467 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFTH 526

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 527 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 578

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 579 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 634

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 635 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 689

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 690 GENRKMLVFPLSDI 703


>gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
 gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
          Length = 750

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 333/606 (54%), Gaps = 48/606 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V + + ++  YLTYA++ I GRA+PD RDGLKPVHRRIL+GM  + +  +  + K
Sbjct: 15  EALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYGMQTLRLAPDAPFKK 74

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG+VDGD  AA RYTE 
Sbjct: 75  CAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDAAAAYRYTEA 134

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  LL+ + +D +DFRPNY G  QEPVVL A  PN+L NG  GIAVGMAT++P H
Sbjct: 135 RMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGAQGIAVGMATSVPPH 194

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           NL E+ D  + +I + +   + LM  ++GPDFPTG V++  R  I   Y TGRGS  +R 
Sbjct: 195 NLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIVETYRTGRGSFRLRA 254

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             H E+T+  +   VVTEIPY V K+ ++EK+AEL+ +K+     D+RDES  +  RVVI
Sbjct: 255 RWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGDVRDES-AEDVRVVI 313

Query: 313 ELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVV 370
           E + R     +++  L++ + L+  F VNM V ++G  P   +L   L+ ++  R EV+ 
Sbjct: 314 EPRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDEALRQWLDHRREVLE 373

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L     R  VL G+ I   NLDEV+RIIR    P+ A             +K  
Sbjct: 374 RRSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQA-------------LKSA 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            DL D                VQ   IL+ RL  L  L   ++R E   L  E  E   +
Sbjct: 421 FDLTD----------------VQVDYILDTRLRALRRLEEMELRKEREKLIEERAEIEGL 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPR---RTRIVEGLLDMED----EDCIVREDMVVTVS 543
           L+  ++    I  ++  +K  +  PR   R    E   +  D    E  I RE + V VS
Sbjct: 465 LAEEAKQWKAITAQIRELKKTVGDPRLAKRRTTFEDAPEATDIDLAEALIEREPITVVVS 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      S +  + +D +   F   T + VL  +S G  +    
Sbjct: 525 QKGWI--------RALKGHVSDLSQLQFKGDDALDFSFFAQTTSKVLALASNGKAFTLDA 576

Query: 604 WRLPIG 609
            +LP G
Sbjct: 577 SKLPGG 582


>gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 748

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 248/742 (33%), Positives = 392/742 (52%), Gaps = 74/742 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +
Sbjct: 187 PHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAV--WKKEDG---EIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  ++ FR 
Sbjct: 302 IVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTEWLVFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE QT AIL LRL  L  L   +++ E + L  E  E
Sbjct: 412 --------------------FNLSEAQTEAILNLRLRHLAKLEEHELQAEKSQLEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  R  D         ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 718 --GRNSVGVRGISLAKGDQVIS 737
             G   + +   +  +G+++++
Sbjct: 672 GKGNKIINISAQAAKEGNELLA 693


>gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396]
 gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396]
          Length = 759

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 257/752 (34%), Positives = 397/752 (52%), Gaps = 75/752 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+GI    + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ 
Sbjct: 6   EEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAAAKHK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA RY
Sbjct: 66  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSAD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL ++G+ TVD+ PN+DGS  EP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV   C+ ++D+P   ++ L E I GPDFP+G  ++  R+ ++  Y TGRGS+ 
Sbjct: 185 PPHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRGSVK 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R      K + + + IVVTE+P+QV+ A ++E+IA+ ++ K++  +ADLRDESD +   
Sbjct: 245 MRA-----KYTKEGQDIVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHENPT 299

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFR 365
             V+I       A+ ++  L+  T L+  + VN+  V L+G +P    L  +L+ ++ FR
Sbjct: 300 RLVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDG-RPAVKDLRVLLQEWLTFR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR +Y L K   R H+L GL +A  N+DEV+ IIR    P+     LM+R     
Sbjct: 359 TQTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKPKPV---LMER----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+VQ   +L+ +L +L  L    IR E + L  E K
Sbjct: 411 ---------------------FGLSDVQAEYVLDTKLRQLARLEEMKIRAEQDELEKERK 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +  DIL S ++L  ++K EL    +     RR+ IVE        + D I  E + V +S
Sbjct: 450 KLEDILGSEAKLRKLVKTELKQDMETFGDERRSPIVERKEAQAFSETDLIASEPVTVVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG      G+  +  D         +H + +F    G  Y
Sbjct: 510 EKGWV------------RAAKGHDIDAQGLSYKAGDKFLAAAKGRSHQNAIFLDDTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   ++   G   T ++  P      +++ VV A+  G    
Sbjct: 558 CVAAHSLP--SARGQGEPLTGRVNPPSGAGFTHVLMGP------DSMKVVLASDAGYGFV 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFA 717
            +L D    NR+GK  + L     +       ++N+  ++  +  G+ + FP+S +   A
Sbjct: 610 ARLEDLQSKNRAGKALISLPKGACVSPPILLERQNNPHLVAISNEGRMLVFPVSELPELA 669

Query: 718 GRNSVGVRGISLAKG---DQVIS-MAIVLHAD 745
                 + GI  A+    ++V+S +A+V   D
Sbjct: 670 KGKGNKIIGIPSARAQAREEVMSNLAVVGEKD 701


>gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 749

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/758 (32%), Positives = 403/758 (53%), Gaps = 77/758 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  +N+YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 21  SVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKNTAKPKKSARTIG 80

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  M+Q +S R  LI GQGNFGS D DP   AA RYTE +L  
Sbjct: 81  DVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGSPD-DPKSFAAMRYTEAKLSA 139

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ LL++LG+ TVD++ N+DG+ QEPV L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 140 YANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLSE 199

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV GC+A++  P +    L + I  PD PT A +I     +   Y TGRGS  +R   H+
Sbjct: 200 VVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPEDLLQLYKTGRGSYKMRATYHV 259

Query: 257 EKTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIE 313
           +    D+E+  +++  +PYQ++   ++E+IA L+  K++  + D+ DESD Q   R+V+E
Sbjct: 260 D----DKEKNLVIIDALPYQISGNKIIEQIANLINAKKLPWVTDIHDESDHQNACRIVLE 315

Query: 314 LKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVV 369
           L R +  D+  +++ L+  T L+S + V  NM+  NG KP+  +L+ IL  +++ R + V
Sbjct: 316 L-RSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNG-KPQVKSLLTILTEWLSVRRDTV 373

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +Y L+K   R H+L GL IA  ++DEV+RIIR   +P   + ELM R         
Sbjct: 374 TRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDP---KAELMTR--------- 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  AIL++RL +L  L   +++ E + L  E  +   
Sbjct: 422 -----------------YDLTESQANAILDIRLRQLARLEEIELKREQSDLEAEKAQIEG 464

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGY 547
            L++  +L G++ +EL +   E    R++ IVE      +++ D    E + V VS  G+
Sbjct: 465 YLNNPDKLTGLMIEELTADMKEHGDKRQSPIVERTEATALKETDLAPSEPVTVIVSKSGW 524

Query: 548 VKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +            R  KG     + +  R  D         ++  V    + G  Y+   
Sbjct: 525 I------------RSAKGHDVDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRLDA 572

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP  S + +G+ L ++L    G     ++   +D+S      ++ A+  G    N  +
Sbjct: 573 HTLP--SARGQGEPLTSLLKPTGGASFVNVL-MGQDDSK-----LIMASSQGYGFINTFA 624

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D     ++GK  +  D    +++ +   Q+  + + +  G  + +P++ + +   +   G
Sbjct: 625 DLDTNQKAGKNVINFDDAFSLITHQIGEQDTLVGVVSSAGHLLVYPLTELPMM--KKGKG 682

Query: 724 VRGISLAKGDQVISMAIVLHADA---DYDERICYMKHM 758
            + I L  GD V+++      D+   D  +R   +K M
Sbjct: 683 NKLIDLKDGDSVVAITTFSEGDSLSLDSGKRTLTLKPM 720


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 244/697 (35%), Positives = 374/697 (53%), Gaps = 65/697 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++I +S+   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG KPVHRRI+  M +
Sbjct: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++DG
Sbjct: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +++PN+L NG  GI
Sbjct: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241
           AVGMAT+IP+HN+ E+ +  +A+IDNP+I ++ L+E I GPDFPTG +I+  R  I  +Y
Sbjct: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRG   +R    +E+       IVVTEIPYQV K+ ++EKIAEL+  KRI  + D+RD
Sbjct: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360
           ES      V+    R    D+++  ++  + +++ F +NM  L+ G  P+   L GILK 
Sbjct: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+     ++ R
Sbjct: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E Q  AIL LRL  L  L    I++EL++L
Sbjct: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-----E 530
             E ++   +L+S  +    I  E+  VK+          RRT   E  +   D     +
Sbjct: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQ 512

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S+ G++        R+ +      S +  ++ D +       T   +L
Sbjct: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564

Query: 591 FFSSLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             S+ G     K + LP G   S +  G+A+  ++ LN  + I T   +     S   L 
Sbjct: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
           VV  +  GN    + S+ I   R GK  +K+ S +++
Sbjct: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650


>gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
          Length = 751

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/646 (36%), Positives = 351/646 (54%), Gaps = 56/646 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD + +D V FR NYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD     L++ ++GPDFPTG VI+  R  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R   H E  +     + +TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRTRAKWHQEDGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  RVVIE K R    ++++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDIRVVIEPKSRAVDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR  Y   +   R  VL G  IA  N+D+V++IIR    P    + +
Sbjct: 357 LREWLDHLRDVLLRRCSYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEP----KPV 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + +++N +DI                         Q  AIL +RL  L  L   +IR E 
Sbjct: 413 LMKAFNLTDI-------------------------QAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP------RRTRIV---EGLLDME 528
            +L  E+K    IL S +     + +++  V+ E+  P      RRT      E  L   
Sbjct: 448 KNLRAELKGINAILKSETEQWAKVAEQVRKVR-EMFGPKTALGKRRTMFADAPEHDLAAI 506

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +E  + RE + V +S  G+V+ +   V           SG+  + +D +   F   T + 
Sbjct: 507 EEAFVEREPVTVVISDKGWVRTLKGHVADL--------SGLTFKTDDKLGQAFFAETTSK 558

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           +L F++ G  Y   V +LP G  +  G+ +   + L+Q   I  + 
Sbjct: 559 LLLFATNGRFYALDVAKLPGG--RGHGEPIRMFIDLDQDAAIVALF 602


>gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
 gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
          Length = 751

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 261/783 (33%), Positives = 408/783 (52%), Gaps = 84/783 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 16  LTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 76  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSLY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 135 ADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y +G GSI +R +   E
Sbjct: 195 ANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIKMRAIYAQE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDESD +    ++ + R 
Sbjct: 255 K-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRS 309

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+  + V  NM+ L+G KP    L+ IL  ++ FR   V RR 
Sbjct: 310 NRVDIESLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLLAILTEWLEFRLTTVKRRL 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L+ R             
Sbjct: 369 QFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGLISR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q  AILE++L  L  L    +R EL+ L  E       L+S
Sbjct: 413 -------------FNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  ++K+E+   +DE   PRR+ I+  E    +++ED +  E + V +S  G+V+  
Sbjct: 460 HSLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEPITVVLSKNGWVR-- 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                 A+     G+       ++F     +  T+  VLFF   G VY      LP  S 
Sbjct: 518 -----AAKGHDVDGKELSYKAGDEFKAQT-LARTNQQVLFFDGEGKVYSLPGHALP--SA 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + +G+ L   L+  +G     I+    ++       V+ AT  G     K+ D    NR+
Sbjct: 570 RGQGEPLTGKLNPAEGVLFEAIVGGEPEQK------VLLATDSGYGFIAKIEDLYVKNRN 623

Query: 672 GKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK  +KL     IL          + +   T +G+ + F +  +             +S 
Sbjct: 624 GKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL-----------PELSR 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMS--------AQRRLISGDTEEITSLKNDSSV 781
            KG+++IS+ +        +E I  M+ ++        A +R  +   E++T  K +   
Sbjct: 673 GKGNKLISIPVA--KAVSREEYIVDMQVLTTNDSLTVHAGKRHFTLKGEDLTHYKGERGR 730

Query: 782 EGN 784
            GN
Sbjct: 731 RGN 733


>gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 751

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/642 (35%), Positives = 347/642 (54%), Gaps = 49/642 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+ G  P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P    + +M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEP----KPVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W         DL D+                Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARW---------DLTDN----------------QVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +LSS  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIETLLSSDDKQWQTVAWEIGEVKKKFAKATEIGRRRTQFADAPETDEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             ++ G  +     +LP G  +  G+ L  I+ ++  + + T
Sbjct: 564 ILTTGGKAFTLGGDKLPGG--RGHGEPLRIIVDMDNDQAVLT 603


>gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
          Length = 770

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 252/734 (34%), Positives = 397/734 (54%), Gaps = 80/734 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+A D+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P   ++ELM+                             L++VQ  +IL +RL  L  
Sbjct: 431 DEP---KQELMR--------------------------AFELTDVQAESILNMRLRSLRK 461

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE 522
           L   +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT    
Sbjct: 462 LEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRLGKRRTTFAH 521

Query: 523 GLL-DMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
               D+ED  +  I RE + + VS  G++        RA +      S +  ++ D +  
Sbjct: 522 APTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKL 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T   F  D
Sbjct: 574 AFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTA--FVHD 629

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++  +  GN      S+ +   R GK  M + + DE    +  + ++ I + 
Sbjct: 630 PSA----KLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDH-IAVV 684

Query: 700 TKLGQCVRFPISAI 713
            +  + + FP+S I
Sbjct: 685 GENRKMLVFPLSDI 698


>gi|218134382|ref|ZP_03463186.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989767|gb|EEC55778.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/332 (54%), Positives = 242/332 (72%), Gaps = 12/332 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EHI          +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRILF M
Sbjct: 1   MDEHIFDK-------VHDVDLQKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY+AL ++AQD+S R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + +  +L D+ K+TVDF PN+D + +EP VL +RYPN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSRISMEMLADINKNTVDFIPNFDETEKEPTVLPSRYPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +IDN      D  ++ ++ I++GPDFPTGA+ILG+ 
Sbjct: 174 GIAVGMATNIPPHNLREVINAVVKIIDNQVEEDRDTTIEEILNIVKGPDFPTGAMILGKM 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVREK+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIEPMANGKNRIVVTELPYMVNKAKLIEKIAELVREKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQL 327
           I DLRDESDR G R+ IEL+R  + +++LNQL
Sbjct: 294 ITDLRDESDRSGMRISIELRRDVNPNIVLNQL 325


>gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
          Length = 751

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/609 (37%), Positives = 341/609 (55%), Gaps = 49/609 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++ +  +
Sbjct: 9   EPQDVQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPF 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD PAA RYT
Sbjct: 69  KKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL+ L +D V+FRP+YDGS +EP VL   +PN+L NG  GIAVGMAT IP
Sbjct: 129 ESRLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQGIAVGMATAIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN  E+ D  + +I  P      L+  ++GPDFPTG +++ G+  I  AY TGRG+  +
Sbjct: 189 PHNAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAEAYNTGRGAFRV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E  +     IVVTEIP+ V K+ ++E+IAEL+ EK++  + D+RDES  +  R+
Sbjct: 249 RAKWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDES-AEDIRI 307

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEV 368
           VIE K +    +V++  L++ T L+S   +N+ V + G  P+   L   L+ ++    +V
Sbjct: 308 VIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAECLREWLDHLRDV 367

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRR+ +  N+   R  VL G  IA  NLD+V++IIR    P    + ++ R        
Sbjct: 368 LVRRSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEP----KPVLIR-------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  L+++Q  +IL +RL  L  L   +IR E  +L  E+K   
Sbjct: 416 -----------------TFKLTDLQADSILNMRLRNLRKLEEMEIRGEDKNLRTELKGIK 458

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIV---EGLLDMEDEDCIVREDMVV 540
            +L+S       + +++  V+D     TP   RRT+     E  L   +E  + RE + V
Sbjct: 459 AVLASEEEQWKKVSEQVKKVRDLFGPKTPLGKRRTQFANAPEHDLATLEEAFVEREPITV 518

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  G+V+ +   V        +  S +  + +D +   F   T + +L   + G  Y 
Sbjct: 519 VVSDKGWVRTLKGHV--------EDLSNLTFKTDDRLGISFFAETTSKLLLLGTHGRFYT 570

Query: 601 EKVWRLPIG 609
               +LP G
Sbjct: 571 LDAQKLPGG 579


>gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
 gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
          Length = 761

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 255/746 (34%), Positives = 404/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV +  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GRGS+ +R
Sbjct: 188 HNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+ +Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FDLTGIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++         Q    K         ++++T     S   +V F  S G  Y  +   
Sbjct: 513 GWIRHAKGHDVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G     K  D 
Sbjct: 565 LP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGFVCKGDDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   +      
Sbjct: 617 LSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  +VL   A
Sbjct: 677 IINIPAAKAKTREEVLSNLMVLPQGA 702


>gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H]
 gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H]
          Length = 769

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 255/746 (34%), Positives = 406/746 (54%), Gaps = 96/746 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  V +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 11  GVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSATAKYKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD++PN+DG+ QEP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 SRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D CV +I+NP  ++  L+E ++GPD+PT A +I  +  I+  Y TGRGSI +R
Sbjct: 190 HNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEIEKIYQTGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E+  GD   IV+T +P+Q +   +LE+IA  +  K++  + DLRDESD +    +
Sbjct: 250 AVYDVEQ--GD---IVITSLPHQASGGKILEQIAGQMTAKKLPMVVDLRDESDHENPVRL 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+  +  ++NM+ L+  +P    L+ IL  ++ +R E
Sbjct: 305 VIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDN-RPAVKNLLVILSEWLEYRRE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL +A  N+DEV+ IIR   +P+    ELM R       
Sbjct: 364 TVRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDPKA---ELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  +ILE++L +L  L    IR E + L IE    
Sbjct: 414 -------------------FALSDTQAHSILEIKLRQLAKLEEIKIRAEQDELRIEQDYL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             IL+S++R+  ++K+E+L+  ++    RR+++VE      + ++D +  E + V VS  
Sbjct: 455 EKILNSKARMSTLMKKEILAAAEQYGDDRRSQLVERSESKALTEKDLVPSEAVTVVVSDK 514

Query: 546 GYVKRV------PLSV-YRAQRR---GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           G+ +        P S+ Y+A        KGRS                  +  V+F  S 
Sbjct: 515 GWARCAKGHDIDPTSLSYKAGDGYLCASKGRS------------------NRPVVFIGSD 556

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKH 654
           G  +      LP    Q  G+ L    +L+ G+  + +IM   +D++ +    +V    +
Sbjct: 557 GRAFTTDAHTLPTARSQ--GEPLTGRFNLSTGKTFVHSIM--SDDDAQY---LLVSDAGY 609

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT-TKLGQCVRFPISA 712
           G V  +   D +  N++GK  + L    ++L  +     END  LT T  G+ + FP+  
Sbjct: 610 GFV--SSFGDMVSRNKNGKALISLPEAAKVLMPQCINNIENDNCLTITSEGRMLVFPVKN 667

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISM 738
           + V           +S  KG+++I++
Sbjct: 668 LPV-----------LSKGKGNKIINI 682


>gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
 gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
          Length = 748

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 351/638 (55%), Gaps = 52/638 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 12  GIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PAA RYTE R
Sbjct: 72  AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
             E+ D  + +I N +   + L   ++GPDFPTG +++     I+ AY TGRG   +R  
Sbjct: 192 AAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+RDES  +  RVV+E
Sbjct: 252 WAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDES-AEDVRVVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVR 371
            + R     +++  L+R + L+S   +N+ V + G  P    L   L+ +V  R  V+ R
Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R           
Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR----------- 416

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ  AIL+ RL  L  L   +++ E  +L  E +    +L
Sbjct: 417 ---------------FELTEVQANAILDTRLRSLRKLEEMELKREFEALTAEKEGIEGLL 461

Query: 492 SSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
           +S       I +++ +VK     E    +R   +E   D    D     + RE + V +S
Sbjct: 462 ASEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTAAMVEREPITVILS 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++ +   V           +GV  + +D +   F+  T   +L  +S G V+  + 
Sbjct: 522 EKGWIRALKGHVTEL--------AGVAFKGDDTLKVAFLSETTAKILLLASNGKVFTIEA 573

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDE 640
            +LP G  +  G  +  ++ L+ G  I   +P+ PE +
Sbjct: 574 SKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK 609


>gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
          Length = 753

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/646 (36%), Positives = 355/646 (54%), Gaps = 56/646 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D V FR NYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL++ ++GPDFPTG VI+  R  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRG+   R     E+ +     +V+TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYSTGRGAFRTRAKWSQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           RDES  +  R+VIE K R    ++++  L+R T L+S   +N+ V + G  P+   L   
Sbjct: 298 RDES-AEDIRLVIEPKSRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+     L
Sbjct: 357 LREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPV---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                          T  L+++Q  AIL +RL  L  L   +IR E 
Sbjct: 414 MR--------------------------TFKLTDIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP------RRTRIVEGL---LDME 528
            +L  E+K    IL+S       + +++  V+D L  P      RRT   +     L   
Sbjct: 448 KNLRAELKGINAILASEKEQWAKVGEQVRKVRD-LFGPKTALGKRRTSFADAPEHDLAAI 506

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +E  + RE + + VS  G+V+ +   V           S +  + +D +   F   T + 
Sbjct: 507 EEAFVEREPVTIVVSDKGWVRTLKGHV--------ADLSSLAFKQDDKLGTTFFAETTSK 558

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           ++ F++ G  Y  +V +LP G  +  G+ +   + L+Q   I ++ 
Sbjct: 559 LMLFATNGRFYSLEVAKLPGG--RGHGEPIRMFIDLDQDAAIVSLF 602


>gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 753

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/720 (34%), Positives = 382/720 (53%), Gaps = 62/720 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +SD+  E+   SVS+   ++  YL YA++ I  RAIPD RDG KPVHRRI+  M +MG++
Sbjct: 8   NSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHAMSEMGLD 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           +N  + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++DGD  A
Sbjct: 68  FNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGNIDGDSAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ + A  +L  + ++ VDFR  Y+    EPVV   ++PN+L NG  GIAVGM
Sbjct: 128 AYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGSSGIAVGM 187

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGR 245
           AT+IP+HN+ E+ +  + +I++P+  L+ L+E I GPDFPTG +I+  R  I  +Y +GR
Sbjct: 188 ATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIFESYRSGR 247

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G   +R    +E        IVV+EIPYQV K+ ++EKIA+L+  KRI  + D+RDES  
Sbjct: 248 GGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLEDIRDESAE 307

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V+    R    D+++  ++  + L++ F +NM  L+ G  P+  +L G+LK ++  
Sbjct: 308 DIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGVLKEWLVH 367

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EV++RR+ + +     R  VL GL+IA  N+DE++ IIR    P++    ++ R    
Sbjct: 368 RREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSV---MISR---- 420

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E Q  AIL LRL  L  L    I++EL++L +E 
Sbjct: 421 ----------------------FSLTENQADAILNLRLRSLRKLEEYQIKSELDNLLLEK 458

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---DEDCIVRE 536
                +L+S  +    I  E+  VK+          RRT   E L   +    +  I +E
Sbjct: 459 DNLNLLLNSEKKQWDQIACEIREVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQAMIEKE 518

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S  G++        R+ +      S +  ++ D +   F   T   +L FS+ G
Sbjct: 519 PVTVVISKRGWI--------RSLKGHSIDLSALNFKEGDGLKIAFHAYTTERILLFSTDG 570

Query: 597 FVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             Y      LP+G   S +  G+A+  ++ +N  + I  +  F +D +      ++F + 
Sbjct: 571 RAYT-----LPVGNLLSGRGHGEAIQLLIDINHNQDI--MAAFVQDPTC----KLLFVSN 619

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            GN    + S  I   R GK   K+ S D +  V     +N + +  +  + + FPI  I
Sbjct: 620 KGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIGDN-VAVVGENRKLLIFPIDQI 678


>gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
 gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
          Length = 748

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 251/748 (33%), Positives = 395/748 (52%), Gaps = 74/748 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ E+V+  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GSI +R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 241 KGSIKMRAV--WKKEDG---EIVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESD 295

Query: 305 RQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  
Sbjct: 296 HENSIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++AFR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R
Sbjct: 355 WLAFRRTTVRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTA---LMAR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q  AIL LRL  L  L   +++ E + L
Sbjct: 412 --------------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+
Sbjct: 446 EKERDELQLTLGSERRLNTLIKKEIQADAKVFASPRRSPLVERAEAKAISESDLTPTEDV 505

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH----TSVLFFSS 594
            V +S  G+V            R  KG    V        D ++   H      V+F  S
Sbjct: 506 TVILSEKGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDS 553

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  
Sbjct: 554 TGRAYALDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDS 605

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISA 712
           G        D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ 
Sbjct: 606 GYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITE 665

Query: 713 IRVFA---GRNSVGVRGISLAKGDQVIS 737
           +   +   G   + +   +  +G+++++
Sbjct: 666 LPQLSKGKGNKIINISAPAAKEGNELLA 693


>gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
 gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
          Length = 757

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 253/745 (33%), Positives = 396/745 (53%), Gaps = 73/745 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N K+ K 
Sbjct: 8   GTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNNAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA+++ P+  L+ L+E ++GPDFPT A +I  R  I+  Y +G+GS+ +R
Sbjct: 187 HNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWHKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+ ++P+   L+ IL  ++A+R +
Sbjct: 302 VVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLD-HRPQVKGLLEILTEWLAYRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL  A  N+DEV+ IIR    P+     LMQR       
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FELSDTQAEAILELKLRHLAKLEETKIRGEQDELAKERDQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  +L  +I++E+ +  +     RR+ I   E    M + D I  E + + +S  
Sbjct: 452 QALLASERKLSTLIRKEIQADAEAFGDERRSPITEREEARAMSEHDFIPSEPVTIVLSES 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDASGLSYKAGDSFRAAAKGKSNQPVVFMDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G      
Sbjct: 560 DPTTLP--SARGQGEPLTGKLTPPPGATIEHVLMAADDQK------LLMASDAGYGFVCT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA--- 717
            +D +  NR+GK  + L    +          +D+LL+ T  G+ + FP++ +   +   
Sbjct: 612 FNDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSITAAGRMLLFPVADLPQLSKGK 671

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
           G   V +     A G+  ++  +VL
Sbjct: 672 GNKIVSIPAAQAASGEDKLAWLLVL 696


>gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 251/740 (33%), Positives = 391/740 (52%), Gaps = 81/740 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ 
Sbjct: 6   QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNTAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ 
Sbjct: 185 PPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSVR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ +   
Sbjct: 245 MRAV--WKKEEGD---VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHENPT 299

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
            ++ + R    D+  ++N L+  T L+  +  ++NM+ LN  +P    L+ IL  ++ FR
Sbjct: 300 RLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNN-RPAVKNLLEILTEWLVFR 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R     
Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPV---LMSR----- 410

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +SE+Q  AILEL+L  L  L    IR E + L  E  
Sbjct: 411 ---------------------FDISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKERA 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVS 543
               +L S  +L  ++K+EL +  D     RR+  R  E    + + + +  E + + +S
Sbjct: 450 HLEGLLGSERKLNTLLKKELQADSDAYGDERRSPLREREEAKAIGEHELMPSEPVTIVLS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG     +G+  +  D         ++  V+F  S G  Y
Sbjct: 510 QSGWV------------RSAKGHDIDPAGLSYKAGDSFLGAARGKSNQPVVFIDSTGRSY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G  +  ++   +D        ++ A+  G    
Sbjct: 558 ALDPVTLP--SARGQGEPLTGKLTPPPGAVVEQVL-MADDTQK-----LLMASDAGYGFV 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAG 718
              SD +  NR+GK  + L S   +++     + +D+LL  T  G+ + FP+  +     
Sbjct: 610 CTFSDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDLLLAITAAGRMLMFPVGDL----- 664

Query: 719 RNSVGVRGISLAKGDQVISM 738
                   +S  KG+++IS+
Sbjct: 665 ------PQLSKGKGNKIISI 678


>gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 754

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 263/790 (33%), Positives = 417/790 (52%), Gaps = 84/790 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ QEP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TG+GS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V H+E   GD   I+VT +P+QV+ A +LE+IA L++ K  +   IADLRDESD +   
Sbjct: 250 AVYHVE--DGD---IIVTALPHQVSGAKVLEQIAALMQAKPSKAPQIADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
             V+I +      + ++  L+  T L+S +  +VN++ L+G KP+   L  +L  ++ FR
Sbjct: 305 RIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDG-KPQLKNLRALLVEWLEFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
              V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P+    +L++R     
Sbjct: 364 VLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKA---KLIER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q   IL+ RL +L  L    +R+E + L  E  
Sbjct: 416 ---------------------FALSEIQADYILDTRLRQLARLEEMKLRDEQDELLKEQA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   +LSS ++L  +++ ELL   +     RR+ IVE      + + D +  E + V +S
Sbjct: 455 KLQALLSSEAKLKKLVRSELLKDAETYGDDRRSPIVERAEAKALTEHDLLPNEKVTVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G++            R  KG     +G+  +  D         ++ S +   S G  Y
Sbjct: 515 EKGWI------------RSAKGHEIDATGLSYKAGDGFKTSAAGRSNQSAVVIDSTGRSY 562

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G     ++  PE++S    LYV+ A+  G    
Sbjct: 563 SLATHTLP--SARGQGEPLTGRLTPPPGATFECVL-MPEEDS----LYVI-ASDAGYGFV 614

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D    N++GK  + L +  ++++       + N +   T  G+ + F IS +    
Sbjct: 615 VKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADREHNWLASVTTEGRLLIFKISDLPQLG 674

Query: 718 ---GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G   +G+ G  +A  ++ ++   VL   A           + A +R +S   +++  
Sbjct: 675 KGKGNKIIGISGERVASREEYVTDIAVLPEGATL--------VLQAGKRTLSLKADDLEH 726

Query: 775 LKNDSSVEGN 784
            K +    GN
Sbjct: 727 YKGERGRRGN 736


>gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 748

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/748 (33%), Positives = 394/748 (52%), Gaps = 74/748 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GSI +R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 241 KGSIKMRAV--WKKEDG---EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESD 295

Query: 305 RQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  
Sbjct: 296 HENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R
Sbjct: 355 WLVFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q  AIL LRL  L  L   +++ E + L
Sbjct: 412 --------------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+
Sbjct: 446 EKERDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDV 505

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G+V            R  KG      G+  R  D         ++  V+F  S
Sbjct: 506 TVILSEKGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDS 553

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  
Sbjct: 554 TGRAYALDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDS 605

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISA 712
           G        D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ 
Sbjct: 606 GYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITE 665

Query: 713 IRVFA---GRNSVGVRGISLAKGDQVIS 737
           +   +   G   + +   +  +G+++++
Sbjct: 666 LPQLSKGKGNKIINISAQAAKEGNELLA 693


>gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 761

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 324/565 (57%), Gaps = 55/565 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M Q+ ++  + + K 
Sbjct: 13  AIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLKLDPAQAFKKS 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++YDA+ R+AQDW+LR  L+EGQGNFG++DGD  AA RYTE R
Sbjct: 73  ARVVGDVIGKYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGNIDGDNAAAYRYTEAR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L+  L + TVDF P Y+G  +EP +    +PN+L NG  GIAVGMATNIP+HN
Sbjct: 133 LTKTAIQLMSGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGSSGIAVGMATNIPSHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRG- 252
           + E++D  + +IDNP  +   LME+  GPD PTG VI+     I NAY TGRG+I +RG 
Sbjct: 193 VAEIIDATLLLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVISNAYETGRGAIRVRGR 252

Query: 253 ------------VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
                        S IEK  G + Q+VV+EIPY V K  ++E+IA+L+ +K++  + D+R
Sbjct: 253 FSTGRDEAGNWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIAQLIADKKLPILEDIR 312

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILK 359
           DESD Q   V+I   R    D++   LYR T L++ F +N+  L+  + P    L  +L+
Sbjct: 313 DESDEQIRLVLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLDSRRTPGVLGLKLVLQ 372

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  + ++++RR+++ L+K   R  +L G  IA  NLD ++ IIR    P    + +M 
Sbjct: 373 EWVISQIDILLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEIIRTEDEP----KPVMM 428

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +                          L++ Q  AIL +RL  L  L   ++R E ++
Sbjct: 429 AEFE-------------------------LTDRQAEAILNMRLRSLRKLEEMELRKERDA 463

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGLLDME--DEDC 532
           L  E +E   +L S +R    +K++L +++ +   DT    RRT I E     E   +  
Sbjct: 464 LLAEQEELQKLLDSPARQRTRLKRDLAALRKDYAEDTALGRRRTTIAEAAPTREFSMDAM 523

Query: 533 IVREDMVVTVSHLGYVK----RVPL 553
           I +E + V +S  G+++     VPL
Sbjct: 524 IEKEPVTVILSAKGWIRAAKGHVPL 548


>gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris]
 gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris]
          Length = 751

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 265/787 (33%), Positives = 409/787 (51%), Gaps = 92/787 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 16  LTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 76  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSLY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 135 ADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y +G GSI +R +   E
Sbjct: 195 ANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIKMRAIYAQE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDESD +    ++ + R 
Sbjct: 255 K-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRS 309

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+  + V  NM+ L+G KP    L+ IL  ++ FR   V RR 
Sbjct: 310 NRVDIESLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLLTILTEWLEFRLTTVKRRL 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L+ R             
Sbjct: 369 QFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGLISR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q  AILE++L  L  L    +R EL+ L  E       L+S
Sbjct: 413 -------------FNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  ++K+E+   +DE   PRR+ I+  E    +++ED +  E + V +S  G+V+  
Sbjct: 460 HSLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEPITVVLSKNGWVR-- 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS- 610
                 A+     G+       ++F     +  T+  VLFF   G     KV+ LP  + 
Sbjct: 518 -----AAKGHDVDGKELSYKAGDEFKAQT-LARTNQQVLFFDGEG-----KVYSLPGHAL 566

Query: 611 PQARGKALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           P ARG+       LN  E I     +   PE +       V+ AT  G     K+ D   
Sbjct: 567 PSARGQGEPLTGKLNPAEGILFEAIVGGEPEQK-------VLLATDSGYGFIAKIEDLYV 619

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVGVR 725
            NR+GK  +KL     IL          + +   T +G+ + F +  +            
Sbjct: 620 KNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL-----------P 668

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMS--------AQRRLISGDTEEITSLKN 777
            +S  KG+++IS+ +        +E I  M+ ++        A +R  +   E++T  K 
Sbjct: 669 ELSRGKGNKLISIPVA--KAVSREEYIVDMQVLTTNDSLTVHAGKRHFTLKGEDLTHYKG 726

Query: 778 DSSVEGN 784
           +    GN
Sbjct: 727 ERGRRGN 733


>gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 751

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/748 (33%), Positives = 394/748 (52%), Gaps = 74/748 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 5   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 64

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 65  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 123

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 124 AAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 183

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G
Sbjct: 184 MATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQG 243

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GSI +R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 244 KGSIKMRAV--WKKEDG---EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESD 298

Query: 305 RQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  
Sbjct: 299 HENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTE 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R
Sbjct: 358 WLVFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q  AIL LRL  L  L   +++ E + L
Sbjct: 415 --------------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+
Sbjct: 449 EKERDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDV 508

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G+V            R  KG      G+  R  D         ++  V+F  S
Sbjct: 509 TVILSEKGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDS 556

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  
Sbjct: 557 TGRAYALDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDS 608

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISA 712
           G        D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ 
Sbjct: 609 GYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITE 668

Query: 713 IRVFA---GRNSVGVRGISLAKGDQVIS 737
           +   +   G   + +   +  +G+++++
Sbjct: 669 LPQLSKGKGNKIINISAQAAKEGNELLA 696


>gi|291320112|ref|YP_003515370.1| topoisomerase IV subunit A [Mycoplasma agalactiae]
 gi|290752441|emb|CBH40412.1| Topoisomerase IV subunit A [Mycoplasma agalactiae]
          Length = 861

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 383/719 (53%), Gaps = 40/719 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  VI  RA+PD+RDGLKPV RRIL+ M  +G++ NK + K AR+ G+V+GKYHPHG+ 
Sbjct: 32  YSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKKSARVVGDVIGKYHPHGDT 91

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM Q+W +   L+E  GN GS+D DP AA RYTE RL + A++++ D+ K+TV
Sbjct: 92  SIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEVRLSEIANYVIGDIRKNTV 151

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F PN+D S +EPVV+    PN+L+NG  GIA G AT +P HNL E++D  +A + NP I
Sbjct: 152 KFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKVKNPAI 211

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +L  L +II+GPDFPTG +I G  GI  A+  G+G I +     +       + I +TEI
Sbjct: 212 ELSKLAKIIQGPDFPTGGIIYGTDGIHEAFERGKGRITLASRYSV-YADNKYKYIEITEI 270

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY V K+ ++ +I  +V  + +  + +++D++DR G  ++I L + A  +VI+N L+  T
Sbjct: 271 PYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILITLDKEADENVIVNYLFLKT 330

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            ++  ++ N V ++ Y P+   +  +L A++   +++ ++  ++ L K R+R  +++G  
Sbjct: 331 QMRVYYNYNNVVIDNYTPKTLGISALLDAYLKHVKDIKIKTIEFDLIKHRERLEIVIGFL 390

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
                 D+V+ +IR S N +               I +L+   D   +T+          
Sbjct: 391 KVAKISDKVIEVIRKSENSKQGV------------IDNLMSAFD---FTLN--------- 426

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI ELRL +L+         E   L  +IK+C  +L+        +      +K +
Sbjct: 427 -QATAIAELRLYKLSKTDEQSFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKVK 485

Query: 512 LDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              PRRT I    +   +  ED +  E + + +S  GY+K+V   +Y +      G    
Sbjct: 486 FGRPRRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYG---- 541

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            ++++D +      S+   +L F++ G      V+++     +  G  L + + L  GE 
Sbjct: 542 -IKEDDNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLASGEE 600

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           + + +   + +SS    YV   TK G  ++  L +F  ++R  K  +AMKL + DE++  
Sbjct: 601 LVSAIKVSDFDSSN---YVCLFTKKGQGKKVLLKEF-DVSRFSKTFVAMKLKNDDELIGA 656

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +      D+LL TK      +  + + ++ G  S G +   LA  D++ + A+V   D+
Sbjct: 657 KISNGLKDVLLITKNNFASLYSENEVPIY-GLKSNGNKACYLANYDELSAFAVVSSNDS 714



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 28/219 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPI-----SAIRVFAGRNSVGVRGISLAKGDQVI 736
           D IL  +  +  + +LL T  G     P+     S  + F    S     + LA G++++
Sbjct: 546 DNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLS---DFVDLASGEELV 602

Query: 737 SMAIVLHADADYDERIC-YMKHMSAQRRLIS-------GDTEEITSLKNDSSVEGNISEE 788
           S   V  +D D    +C + K    ++ L+          T     LKND  + G     
Sbjct: 603 SAIKV--SDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKNDDELIGAKISN 660

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++       +L +++  F    S  +  I      G +A  ++  +E+ A   V   +
Sbjct: 661 GLKD-------VLLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDELSAFAVV---S 710

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            ND ++L++       V V+EI   S+A KGV +F+ ++
Sbjct: 711 SNDSVVLINANNKAKVVNVSEITKVSKANKGVALFAKSR 749


>gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 748

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/682 (34%), Positives = 365/682 (53%), Gaps = 64/682 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+LF M Q+ ++    + K AR+ 
Sbjct: 14  INLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAMRQLKLDPGSGFKKSARVV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G+YHPHG+ ++YDAL R+AQ +S+R  L++GQGNFG+VDGD  AA RYTE RL + 
Sbjct: 74  GDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNVDGDNAAAMRYTEARLTEV 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+ + +DTVDFR  YDG   EP VL   +P +L NG  GIAVGMAT+IP HN  E+
Sbjct: 134 AAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAAGIAVGMATSIPPHNAAEL 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
            D  + +I +P+   + L+E ++GPDFPTG +I+  R  +  AY TGRG   +R     E
Sbjct: 194 CDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLEAYETGRGGFRVRARWEQE 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +      QIVVTEIPYQV K+ ++EKIAEL++ +++  + D+RDES  +   V++   R 
Sbjct: 254 ELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDVRDESAEEIRLVLVPKART 313

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
                ++  L+R T L++ F +NM  L+ G  P   +L G+L+A++  R+ V+VRR+ + 
Sbjct: 314 VDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVLRAWLEHRKVVLVRRSNFR 373

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+K   R  VL G   A  NLDEV+RIIR    P+ A   L+++                
Sbjct: 374 LDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPA---LIKK---------------- 414

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       L++ Q  AIL +RL  L  L   +IR E   L  E K    ++ S  +
Sbjct: 415 ----------FKLTDNQAEAILNMRLRSLRKLEEMEIRGEHKELSAEQKALKSLVKSEDK 464

Query: 497 LLGIIKQELLSVKDELDTP------RRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
               +  E+  VK  L  P      RRT+      +  +  E  I +E + V  S  G++
Sbjct: 465 QWARVADEIKEVK-ALFGPKTALGARRTKFSDAPAIEYVPMEAMIEKEPVTVVCSKKGWI 523

Query: 549 KRVPLSVYRAQRRGGKGRSG----VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           + +            KG  G    +  ++ D    L    T   VL F++ G  Y   V 
Sbjct: 524 RTM------------KGHVGPDTEIKFKEGDAGRFLLHAETTDKVLLFATDGRFYTLDVT 571

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP G  +  G+ +  ++ L++   +  +              ++ A+  GN       +
Sbjct: 572 KLPGG--RGNGEPVRLMIDLDESHEVVELF------VHQPGRKLIVASHEGNGFIVPEDE 623

Query: 665 FIQINRSGKIAMKLDSRDEILS 686
            + + R+GK  + +  +DE ++
Sbjct: 624 VVAMRRAGKQVLNVTGKDEAIA 645


>gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus]
          Length = 761

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 253/746 (33%), Positives = 408/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    + D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+    K  SG     + ++      S+  +V F  S G  Y  +   
Sbjct: 513 GWVRHAKGHDVDAESLNYK--SG-----DKYLAHARGKSSQPAV-FLGSDGRSYSLESHS 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +   L++  G  I  ++   ED+     L++V  +  G     K +D 
Sbjct: 565 LP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ-----LWLV-GSDAGYGFVCKGADL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A      
Sbjct: 617 LSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  I L   A
Sbjct: 677 IINIPAAKAKEREEVLSHLIALPQGA 702


>gi|301633131|gb|ADK86685.1| DNA topoisomerase IV, A subunit [Mycoplasma pneumoniae FH]
          Length = 789

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/747 (33%), Positives = 395/747 (52%), Gaps = 59/747 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ ++ +   +I D    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   EKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+A+IYDA+ RM+Q W   L  I   GN GS+DGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S  EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+GE++DG    I+NPD DL A+++I++GPDFPTG ++     + N Y TG+G  V
Sbjct: 182 IAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+   +   T+  + QIV+TEIPY+  KA ++++I EL+ + ++  +  + D SDR G R
Sbjct: 242 IQA-KYETNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I  K   SAD I+  L+++T LQ  F++N   +    P R  L+     F+AF  E++
Sbjct: 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +   KY L  A  R  ++ GL  AV+ +DE++R+IR + + + A+ +             
Sbjct: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTK------------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL--GIEIKEC 487
              LID  ++T+           Q  AI+ LRL +LT      +  E   L   I+  EC
Sbjct: 408 ---LIDKYAFTLN----------QAEAIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAEC 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSH 544
           L I   ++R   +++ +    K + + PRR +IV GL++   ++D D I  +++ + +SH
Sbjct: 455 L-IAKPQAR-NQLLQAQFFQYKKQFNQPRRAQIV-GLIEKQKVQDSDFIEHKEVGLLISH 511

Query: 545 LG-YVKRVP--LSVYRAQRRGGKGR--SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            G Y K  P  L+ +  + +  + +   G V+++ D+    F+V         +SLG + 
Sbjct: 512 DGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVVQNSDY---FFMV---------TSLGNII 559

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
              +++    +     + L     L + E++        D+     L  V  ++ G V+R
Sbjct: 560 TVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLL--VLTSQCGMVKR 617

Query: 660 NKLSDFIQINR-SGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRFPISAIRVF 716
            +LS  I   +      M L  RD++++  V+T  +   + L +       F    I + 
Sbjct: 618 VELSKVINTKQIKSSCCMALRERDKLVNAFVQTKREPKLVCLVSSSNSFATFLAEEIPII 677

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLH 743
           + +  +GV+GI L K ++ +  A+ L 
Sbjct: 678 SNK-GIGVKGIKL-KAEEKVRFAMPLQ 702


>gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
 gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
          Length = 756

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 252/758 (33%), Positives = 414/758 (54%), Gaps = 84/758 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+    K+ K
Sbjct: 10  QGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAMSELGLSALSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL ++ + T D++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT++P
Sbjct: 129 ESRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNGITGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV + C+ +ID+P   L  ++E ++GPD+PT A +I  R  IK  Y +GRGS   
Sbjct: 189 PHNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEIKRIYTSGRGSFKS 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V H+E+  GD   IV++ +P++V+   +L+ IA+ + +K++  +ADLRDESDR     
Sbjct: 249 RAVYHMEE--GD---IVISALPHRVSGGKILKDIAKQMIDKKLPMVADLRDESDRNHPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQ--SLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+     ++NM+ L+  +P+   L+ IL  ++ +R+
Sbjct: 304 LVIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDK-RPQVKGLLKILNEWLVYRK 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  N+DEV+ IIR   N + ++ EL+ R      
Sbjct: 363 RTVRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIR---NYDDSKAELITR------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AILE++L +L  L    IR+E++ L  E  +
Sbjct: 414 --------------------FDLSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSH 544
            L +L+S  R   ++K+E+ +        RR+ +VE L    + +++ +  E + V +S 
Sbjct: 454 LLLLLNSERRFNTLLKKEIKADALNYGDARRSPLVERLEAKALTEKELLPNEQISVILSR 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT-DLFIVS----THTSVLFFSSLGFVY 599
            G++            R  KG   V  +  ++ T D F++S    ++ S +F  + G  Y
Sbjct: 514 QGWI------------RSAKGHD-VDAQALNYKTGDEFLISAQGCSNQSAIFIDASGRAY 560

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S +++G+ L      NQ E+   +     D+   N+ Y++ ++ HG    
Sbjct: 561 SLDAHSLP--SARSQGEPLTG--RFNQNEQCAFVSVLLGDD---NDQYII-SSDHGYGFI 612

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT--KLGQCVRFPISAIRVFA 717
            K SD    N++GK  + L     +L V+  +   D L  T    G+ + FP++++   +
Sbjct: 613 AKFSDINSRNKNGKALINLSENAYLLPVQKLSNNADDLCLTISNEGRMLIFPVNSLPNLS 672

Query: 718 ---GRNSVGVRGISLAKGDQVISM--------AIVLHA 744
              G   + + G    K ++ ++M        ++ LHA
Sbjct: 673 RGKGNKMINIMGAKATKREEFVTMLRIIPKEGSVTLHA 710


>gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 748

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 247/742 (33%), Positives = 392/742 (52%), Gaps = 74/742 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +
Sbjct: 187 PHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAV--WKKEDG---EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  ++ FR 
Sbjct: 302 IVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTEWLVFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL LRL  L  L   +++ E + L  E  E
Sbjct: 412 --------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  R  D         ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 718 --GRNSVGVRGISLAKGDQVIS 737
             G   + +   +  +G+++++
Sbjct: 672 GKGNKIINISAQAAKEGNELLA 693


>gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
 gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
          Length = 747

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 245/724 (33%), Positives = 392/724 (54%), Gaps = 74/724 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P++ DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+
Sbjct: 16  EEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAKYKKSARTVGDVLGKF 75

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ ++ R  L++GQGN+GS D DP   AA RYTE RL K +  LL
Sbjct: 76  HPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPD-DPKSFAAMRYTEARLSKFSEVLL 134

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP HN  EV + C 
Sbjct: 135 SELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATDIPPHNAREVANACA 194

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +++ P   L+ +ME+++GPD+PT A +I     I   Y TGRGSI +R    +E     
Sbjct: 195 MLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSIKMRACYSVEDG--- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +    ++ + R    D 
Sbjct: 252 --EIVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENPTRLVVVPRSNRVDT 309

Query: 323 --ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  + VN+  + L+G +P+   L+GILK ++ FR+  V RR ++ L+
Sbjct: 310 EQLMNHLFATTDLEKQYRVNLNILGLDG-RPKVKPLVGILKEWLEFRQTTVTRRLQHRLD 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR    P   + ELM R                  
Sbjct: 369 KVLARLHILEGLLIAYLNIDEVIEIIRTEDKP---KEELMSR------------------ 407

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L++ Q  AILEL+L  L  L    +  E + L  E ++   +L S  RL 
Sbjct: 408 --------FALTDKQAEAILELKLRHLAKLEEMKLTGEQDELNKEREKLETLLGSDRRLK 459

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+ELL+  +     RR+ IVE      + + D    E + V +S  G+V+       
Sbjct: 460 TLIKKELLADAENYGDERRSPIVERSEAKALSERDLTPAEAVTVVLSKKGWVRTAKGHDI 519

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              +   K     +   E          ++  V+F  S G  +  +   LP  S +++G+
Sbjct: 520 EGDKLSYKSGDSYLASAEG--------KSNQPVVFLDSSGKSFSCEAHLLP--SARSQGE 569

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L    SL  GE +  ++   +DES     +++ A+  G     + SD +  N++GK  +
Sbjct: 570 PLTGRFSLVAGENVEHVL-MAKDES-----HLLLASDAGYGFVCQFSDLVSRNKNGKAII 623

Query: 677 KLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            L +  +IL        Q + +++ +  G+ + FP++ +             +S  KG++
Sbjct: 624 TLPTGAKILPPNNVNDLQHDKVIVISNEGRMLVFPVADL-----------PQLSKGKGNK 672

Query: 735 VISM 738
           +IS+
Sbjct: 673 LISI 676


>gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
 gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
          Length = 747

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/740 (33%), Positives = 391/740 (52%), Gaps = 82/740 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 9   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYAK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+V+GK+HPHG++A Y A+  MAQD++ R  LI+GQGN+GS++ D  AA RYTE 
Sbjct: 69  AARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLEDDA-AAYRYTEA 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL +L + TVDF+PN+DGS  EPV   +R P++L+NG  GIAVGMAT+IP H
Sbjct: 128 RLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVGMATDIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           N+ E+ +  V +++NP   L  L+ +++GPD+PT A +I  ++ I   Y  GRGSI +R 
Sbjct: 188 NINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQGRGSIRMRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V      S +  +IV+  +P+Q + + ++ +IA+ +R K++  + D+RDESD +   R+V
Sbjct: 248 V-----WSKEDGEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESDHENPIRIV 302

Query: 312 IELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
           I  +      D +++ L+  T L+  + V  NM+ L+G KP    L  IL  +++FR   
Sbjct: 303 IVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHEILTEWLSFRRST 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR    L+K  +R H+L GL IA  N+DEV+ IIR    P+     LM R        
Sbjct: 362 VTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAV---LMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q  AIL LRL  L  L   +++ E N L  E  E  
Sbjct: 411 ------------------FNLSDIQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELR 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+ +       PRR+ +VE      + + D    ED+ V +S  G
Sbjct: 453 LILGSERRLNTLIKKEIQADAKTFADPRRSPLVERAEAKAISESDLTPTEDVTVILSEKG 512

Query: 547 YVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +V            R  KG      G+  R  D         ++  V+F  S G  Y   
Sbjct: 513 WV------------RCAKGHDIDVEGLSYRAGDGYLAHTRGRSNQPVVFLDSTGRTYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGNVRRNK 661
              LP  S +++G+ L   ++L +G  +  + M  PE +       V+ A+  G      
Sbjct: 561 PTSLP--SARSQGEPLTGKITLPEGATVEQVLMAAPETK-------VLMASDSGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L+ +    E DI L   +  G+ + FP++ + +    
Sbjct: 612 FEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDISLVAMSSAGRMLVFPLAELPI---- 667

Query: 720 NSVGVRGISLAKGDQVISMA 739
                  +S  KG+++I+++
Sbjct: 668 -------LSKGKGNKIINIS 680


>gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
 gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
          Length = 776

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 271/729 (37%), Positives = 376/729 (51%), Gaps = 77/729 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++++    + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+    K VK AR
Sbjct: 23  AAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSAR 82

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL 
Sbjct: 83  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLT 142

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP HNL 
Sbjct: 143 PIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLR 202

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV   CVA+I  P +    L  +I GPDF  G  +I     I   Y TGRGS+ +R    
Sbjct: 203 EVAQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITPAADIAQIYGTGRGSLKVRARWT 262

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD 298
            E+ +  + Q+V+TE+P   +   +LE+I E+   K                  ++++ D
Sbjct: 263 FEEMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLD 322

Query: 299 -LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
            +RDES +    R+V E K      D  +N L   TS++S  S+N+V +    +P +  L
Sbjct: 323 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGL 382

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  +VAFR   VVRRT++ L+K  DR HVL G  +   N+DEV++ IR S  P  A 
Sbjct: 383 RDILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRMLVYLNVDEVIQTIRESDEPRAA- 441

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSE Q   ILE+RL +L  L    I 
Sbjct: 442 --LMER--------------------------FKLSERQAEDILEMRLRQLARLEGFKIE 473

Query: 475 NELNSL---GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            EL       I ++E LD  ++  RLL  IK+     K   D  RRT ++E       E 
Sbjct: 474 QELADKRKDQISLQELLDNPTTLKRLL--IKEIEADAKQYGDE-RRT-LIETAERAVLET 529

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            ++ E + V VS  G++        RA++  G   S    +  D +   F   T  +++ 
Sbjct: 530 KVLDEPVTVIVSQKGWL--------RARQGHGHDASQFTFKQGDDLYGAFECRTTDTLIA 581

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVF 650
               G VY   V  LP  S +  G+ +  ++ L  G RI  TI   P  ES W     + 
Sbjct: 582 MGDNGRVYSVPVGGLP--SARGDGQPVTTMIDLESGTRIVHTIAAAP--ESRW-----LL 632

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
           AT+ G     KLSD +   R+GK  + L++ DE+L  V        + L +  G+ + F 
Sbjct: 633 ATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFEGATHLALLSAKGKFLVFG 692

Query: 710 ISAIRVFAG 718
           +   +  +G
Sbjct: 693 LDECKSLSG 701


>gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
 gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
          Length = 748

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 251/748 (33%), Positives = 410/748 (54%), Gaps = 69/748 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++   KY 
Sbjct: 8   EDGVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKAGSKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 68  KSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K A  LL +LG+ TVD++PN+DG+  EP  L +R PNVL+NG  GIAVGMAT+I
Sbjct: 127 TESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EV + C+ ++DNP  D + L++ I GPDFPT A +I  +  ++  Y +GRGS+ 
Sbjct: 187 PQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQKMYHSGRGSVK 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V    +  GD   IV+T +P+Q + A +LE+IA+ +++K++  ++DLRDESD +   
Sbjct: 247 MRAV--YTREDGD---IVITALPHQASGAKVLEQIADQMQKKKLPMVSDLRDESDHENPT 301

Query: 309 RVVIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFR 365
           R+VI  K      + +++ L+  T L+  + V  NM+ ++G  P+  +L  I+K ++ +R
Sbjct: 302 RLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGL-PQVKSLDMIIKEWLEYR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
              V RR ++ L+K   R H+L GL +A  N+DEV+ IIR    P   ++EL++R     
Sbjct: 361 ITTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEP---KQELIKR----- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q  AILEL+L  L  L    I+ E + L  E  
Sbjct: 413 ---------------------FGLSDKQAEAILELKLRHLAKLEEMKIKGEQDELSKERD 451

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           +    L S  RL  ++K+E+ +  +     RR+ IV  +    + + D +  + + V +S
Sbjct: 452 QLEKTLGSERRLKTLVKKEITADAETYGDDRRSPIVSRDEAQALSEIDLMGADPVTVVMS 511

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +      +G+  +  D         T+   +F  + G  Y   +
Sbjct: 512 EKGWI--------RAAKGHDVDGTGLQYKSGDKFLIQANAKTNQQAIFLDTGGRAYSVNI 563

Query: 604 WRLPIGSPQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             LP    +  G+ +   ++L  G++I+T ++  P+D+        + A++ G     + 
Sbjct: 564 HGLP--GARGYGEPVTGSINLASGQKISTMVIGQPKDQ-------YLMASEAGYGFITQY 614

Query: 663 SDFIQINRSGKIAM-KLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + K D +     V+    E D ++  +  G+ + FP++ + V A   
Sbjct: 615 EDMVSKNKAGKALLNKPDDKAIHSPVKVSDVEQDWVVAVSNEGRLLTFPVADLPVMA--K 672

Query: 721 SVGVRGISLA-KGDQVISMAIVLHADAD 747
             G + I+L   GD+V+ + I L  + D
Sbjct: 673 GKGNKIINLGTSGDEVL-IGISLMKEGD 699



 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           K+Q+++  SE G+G  T   D    N++GK +      K   I + V V  V + D ++ 
Sbjct: 597 KDQYLM-ASEAGYGFITQYEDMVSKNKAGKALLNKPDDKA--IHSPVKVSDV-EQDWVVA 652

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVI-FSTAKDERVVSVERIRESEIV 903
           VS++G L+  PV ++ + ++     +I   T+ DE ++ +  ++E +++
Sbjct: 653 VSNEGRLLTFPVADLPVMAKGKGNKIINLGTSGDEVLIGISLMKEGDML 701


>gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
 gi|2501298|sp|P75352|PARC_MYCPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1673679|gb|AAB95679.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
          Length = 789

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 248/752 (32%), Positives = 394/752 (52%), Gaps = 69/752 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ ++ +   +I D    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   EKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+A+IYDA+ RM+Q W   L  I   GN GS+DGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S  EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+GE++DG    I+NPD DL A+++I++GPDFPTG ++     + N Y TG+G  V
Sbjct: 182 IAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+   +   T+  + QIV+TEIPY+  KA ++++I EL+ + ++  +  + D SDR G R
Sbjct: 242 IQA-KYETNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I  K   SAD I+  L+++T LQ  F++N   +    P R  L+     F+AF  E++
Sbjct: 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +   KY L  A  R  ++ GL  AV+ +DE++R+IR + + + A+ +             
Sbjct: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTK------------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
              LID  ++T+           Q  AI+ LRL +LT         ++  L  E KE   
Sbjct: 408 ---LIDKYAFTLN----------QAEAIVSLRLYQLTN-------TDIKVLFAEQKELEQ 447

Query: 490 ILSSRSRLLG-------IIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMV 539
            + +  RL+        +++ +    K + + PRR +IV GL++   ++D D I  +++ 
Sbjct: 448 TIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIV-GLIEKQKVQDSDFIEHKEVG 506

Query: 540 VTVSHLG-YVKRVP--LSVYRAQRRGGKGR--SGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           + +SH G Y K  P  L+ +  + +  + +   G V+++ D+    F+V         +S
Sbjct: 507 LLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVVQNSDY---FFMV---------TS 554

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG +    +++    +     + L     L + E++        D+     L  V  ++ 
Sbjct: 555 LGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLL--VLTSQC 612

Query: 655 GNVRRNKLSDFIQINR-SGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRFPIS 711
           G V+R +LS  I   +      M L  RD++++  V+T  +   + L +       F   
Sbjct: 613 GMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFATFLAE 672

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
            I + + +  +GV+GI L K ++ +  A+ L 
Sbjct: 673 EIPIISNK-GIGVKGIKL-KAEEKVRFAMPLQ 702


>gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329]
          Length = 761

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 253/746 (33%), Positives = 407/746 (54%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+    K  SG     + ++      S+  +V F  S G  Y  +   
Sbjct: 513 GWVRHAKGHDVDAESLNYK--SG-----DKYLAHARGKSSQPAV-FLGSDGRSYSLESHS 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +   L++  G  I  ++   ED+     L++V  +  G     K +D 
Sbjct: 565 LP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ-----LWLV-GSDAGYGFVCKGADL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A      
Sbjct: 617 LSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++V+S  I L   A
Sbjct: 677 IINIPAAKAKEREEVLSHLIALPQGA 702


>gi|148377449|ref|YP_001256325.1| DNA topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
 gi|148291495|emb|CAL58881.1| Topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
          Length = 861

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/719 (31%), Positives = 383/719 (53%), Gaps = 40/719 (5%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  VI  RA+PD+RDGLKPV RRIL+ M  +G++ NK + K AR+ G+V+GKYHPHG+ 
Sbjct: 32  YSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKKSARVVGDVIGKYHPHGDT 91

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM Q+W +   L+E  GN GS+D DP AA RYTE RL + A++++ D+ K+TV
Sbjct: 92  SIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPAAAMRYTEVRLSEIANYVIGDIRKNTV 151

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F PN+D S +EPVV+    PN+L+NG  GIA G AT +P HNL E++D  +A + NP I
Sbjct: 152 KFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKVKNPAI 211

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +L  L +II+GPDFPTG +I G  GI  A+  G+G I +    ++  T    + I +TEI
Sbjct: 212 ELTKLAKIIQGPDFPTGGIIYGTEGIHEAFERGKGRITLASRYNVY-TDSKYKYIEITEI 270

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY V K+ ++ +I  +V  + +  + +++D++DR G  ++I L + A  +VI+N L+  T
Sbjct: 271 PYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILITLDKEADENVIVNYLFLKT 330

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            ++  ++ N V ++ Y P+   +  +L A++   +++ ++  ++ L K + R  +++G  
Sbjct: 331 QMRIYYNYNNVVIDNYTPKTLGISALLDAYLKHVKDIKIKTIEFDLIKHKARLEIVIGFL 390

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
                 D+V+ +IR S N +               I +L+   D   +T+          
Sbjct: 391 KVAKITDKVIEVIRKSENSKQGV------------IDNLMSAFD---FTLN--------- 426

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AI ELRL +L+         E   L  +IK+C  +L+        +      +K +
Sbjct: 427 -QATAIAELRLYKLSKTDEHAFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSK 485

Query: 512 LDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RRT I    +   +  ED +  E + + +S  GY+K+V   +Y +      G    
Sbjct: 486 FGRARRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYG---- 541

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            ++++D +      S+   +L F++ G      V+++     +  G  L + + L  GE 
Sbjct: 542 -IKEDDNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEE 600

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           + + +   + +SS    YV   TK G  ++  L +F  ++R  K  +AMKL S DE++  
Sbjct: 601 LVSAIKVSDFDSSN---YVCLFTKKGQGKKVLLKEF-DVSRFSKTFVAMKLKSDDELIGA 656

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +      D+LL TK      +  + + ++ G  S G +   LA  D++ + A+V   D+
Sbjct: 657 KLSNGLKDVLLITKNNFASLYSENEVPIY-GLKSNGNKACYLANYDELSAFAVVSSNDS 714



 Score = 37.7 bits (86), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 28/219 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPI-----SAIRVFAGRNSVGVRGISLAKGDQVI 736
           D IL  +  +  + +LL T  G     P+     S  + F    S     + L  G++++
Sbjct: 546 DNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLS---DFVDLTSGEELV 602

Query: 737 SMAIVLHADADYDERIC-YMKHMSAQRRLIS-------GDTEEITSLKNDSSVEGNISEE 788
           S   V  +D D    +C + K    ++ L+          T     LK+D  + G     
Sbjct: 603 SAIKV--SDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSN 660

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++       +L +++  F    S  +  I      G +A  ++  +E+ A   V   +
Sbjct: 661 GLKD-------VLLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDELSAFAVV---S 710

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            ND ++L++       V V+EI   S+A KGV +F+ ++
Sbjct: 711 SNDSVVLINANNRAKVVNVSEITKVSKANKGVALFAKSR 749


>gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
 gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
          Length = 747

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/740 (33%), Positives = 391/740 (52%), Gaps = 82/740 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 9   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYAK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+V+GK+HPHG++A Y A+  MAQD++ R  LI+GQGN+GS++ D  AA RYTE 
Sbjct: 69  AARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLEDDA-AAYRYTEA 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL +L + TVDF+PN+DGS  EPV   +R P++L+NG  GIAVGMAT+IP H
Sbjct: 128 RLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVGMATDIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           N+ E+ +  V +++NP   L  L+ +++GPD+PT A +I  ++ I   Y  GRGSI +R 
Sbjct: 188 NINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQGRGSIRMRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V      S +  +IV+  +P+Q + + ++ +IA+ +R K++  + D+RDESD +   R+V
Sbjct: 248 V-----WSKEDGEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESDHENPIRIV 302

Query: 312 IELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
           I  +      D +++ L+  T L+  + V  NM+ L+G KP    L  IL  +++FR   
Sbjct: 303 IVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHDILTEWLSFRRST 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR    L+K  +R H+L GL IA  N+DEV+ IIR    P+     LM R        
Sbjct: 362 VTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAV---LMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q  AIL LRL  L  L   +++ E N L  E  E  
Sbjct: 411 ------------------FNLSDIQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELR 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+ +       PRR+ +VE      + + D    ED+ V +S  G
Sbjct: 453 LILGSERRLNTLIKKEIQADAKTFADPRRSPLVERAEAKAISESDLTPTEDVTVILSEKG 512

Query: 547 YVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +V            R  KG      G+  R  D         ++  V+F  S G  Y   
Sbjct: 513 WV------------RCAKGHDIDVEGLSYRAGDGYLAHARGRSNQPVVFLDSTGRAYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGNVRRNK 661
              LP  S +++G+ L   ++L +G  +  + M  PE +       V+ A+  G      
Sbjct: 561 PTSLP--SARSQGEPLTGKITLPEGAIVEQVLMAAPETK-------VLMASDSGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L+ +    E D+ L   +  G+ + FPI+ + +    
Sbjct: 612 FDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVSLVAMSSAGRMLVFPIAELPI---- 667

Query: 720 NSVGVRGISLAKGDQVISMA 739
                  +S  KG+++I+++
Sbjct: 668 -------LSKGKGNKIINIS 680


>gi|77168988|gb|ABA63431.1| gyrase subunit A [Clostridium perfringens]
 gi|77169130|gb|ABA63502.1| gyrase subunit A [Clostridium perfringens]
 gi|77169146|gb|ABA63510.1| gyrase subunit A [Clostridium perfringens]
 gi|77169150|gb|ABA63512.1| gyrase subunit A [Clostridium perfringens]
 gi|77169158|gb|ABA63516.1| gyrase subunit A [Clostridium perfringens]
 gi|77169294|gb|ABA63584.1| gyrase subunit A [Clostridium perfringens]
 gi|77169350|gb|ABA63612.1| gyrase subunit A [Clostridium perfringens]
 gi|77169352|gb|ABA63613.1| gyrase subunit A [Clostridium perfringens]
 gi|77169404|gb|ABA63639.1| gyrase subunit A [Clostridium perfringens]
 gi|77169406|gb|ABA63640.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
 gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
          Length = 757

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 249/729 (34%), Positives = 390/729 (53%), Gaps = 85/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  EEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 138 GELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L++I++GPD+PT A +I  R  I+  Y +GRGS+ +R V   ++  GD
Sbjct: 198 ALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQSGRGSVRMRAV--WKREDGD 255

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ +    ++ + R    D+
Sbjct: 256 ---VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHENPTRLVIVPRSNRVDM 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ LN  +P    L+ IL  ++ +R + V RR ++ L+
Sbjct: 313 DQVMNHLFATTDLEKSYRINLNMIGLNN-RPAVKNLLEILSEWLIYRRDTVRRRLQHRLD 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P+     LM R                  
Sbjct: 372 KVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++ 
Sbjct: 411 --------FEISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMN 462

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL +  D     RR+  R  E    + + + +  E + + +S  G+V        
Sbjct: 463 TLLKKELQADSDLYGDDRRSPLREREEAKAISESELVPSEPVTIVLSQSGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D         ++  V+F  S G  Y       PI  P 
Sbjct: 515 ----RSAKGHDIDPGGLSYKAGDSYRAAARGKSNQPVVFVDSTGRSYALD----PITLPS 566

Query: 613 ARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           ARG+   L   L+   G  +  ++   +D+       ++ A+  G       SD +  NR
Sbjct: 567 ARGQGEPLTGKLTPPPGAVMEQVLMEADDQK------LLMASNAGYGFVCTFSDLVSRNR 620

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L    ++++      ++D+LL  T  G+ + FP+  +             +S 
Sbjct: 621 AGKALLTLPQNAKVMTPLAIHHDDDLLLAITSAGRMLLFPVGDL-----------PQLSK 669

Query: 730 AKGDQVISM 738
            KG+++IS+
Sbjct: 670 GKGNKIISI 678


>gi|77169328|gb|ABA63601.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMAYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|298498650|ref|ZP_07008457.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
 gi|297542983|gb|EFH79033.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
          Length = 595

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 342/628 (54%), Gaps = 100/628 (15%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EV
Sbjct: 2   RIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREV 61

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++ 
Sbjct: 62  VTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVA 121

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   
Sbjct: 122 AMLERAGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 180

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+V
Sbjct: 181 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 240

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y
Sbjct: 241 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 300

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGN 656
           + KV++LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G 
Sbjct: 301 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGT 354

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF-------- 708
           V++  L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF        
Sbjct: 355 VKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAV 414

Query: 709 ------PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
                 P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D    
Sbjct: 415 VDENGQPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD---- 468

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                           +LTV+E G+GKR
Sbjct: 469 ------------------------------------------------VLTVTENGYGKR 480

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           TS  ++    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+ 
Sbjct: 481 TSLSEYPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVS 538

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRE 899
              R T+GV +  T++ E VV ++RI E
Sbjct: 539 QVGRNTQGVTLIRTSEGESVVGLQRIDE 566


>gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510]
 gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510]
          Length = 741

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 345/602 (57%), Gaps = 43/602 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + D +   YL+YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ +E      K A
Sbjct: 10  ILEKPLADALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLRLEPTTPPKKSA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG++++YDAL R+AQD+S+R  L++GQGNFG++DGD  AA RYTE RL
Sbjct: 70  RVVGDVIGKFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDNAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D VDFRP YDG  +EP VL A +PN+L NG  GIAVGMATNIP HN+
Sbjct: 130 TEVAKALLEGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAVGMATNIPPHNV 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           GE+ D    +I + D  ++ L+  + GPDFPTG V++  R  +  AY TGRG+  +R   
Sbjct: 190 GEICDALRHLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRTGRGAFRLRARW 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +EK +    QIVVTE+PYQV KA ++EKIAEL+  K+++ + D+RDES      V++  
Sbjct: 250 EVEKLAQGTWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDESAEDVRLVLVPK 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRT 373
            R    +V++  L++ T L+  FS+NM  L   + P    L  +L+AF+  R EV+VRR+
Sbjct: 310 SRNVDPEVLMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFLDHRHEVLVRRS 369

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L +   R  VL G   A  NLDEV+RIIR    P   ++EL++              
Sbjct: 370 NHRLTQIDHRLEVLGGYLAAYLNLDEVIRIIREEDEP---KQELIR-------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
               ++T        L++VQ  AIL +RL  L  L   +IR E  +L  E    L++L  
Sbjct: 413 ----AFT--------LTDVQADAILNMRLRNLRKLEEMEIRREHEALTGEKNGLLELLGD 460

Query: 494 RSRLLGIIKQELLSVKDELDT----PRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGY 547
            +     I + +  +K +  T     RRT + +   ++++  +  + RE + V  S  G+
Sbjct: 461 EALRWKRIAEGVAEIKKKFGTGALGKRRTDVADAPAVIEVPLDALVEREPVTVICSAKGW 520

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++ V   +  A+    K + G    +  FV       T   +L F+S G  +   V +LP
Sbjct: 521 IRTVRGHLTDAEAEDVKYKDG---DERGFVER---CETTDKLLVFASNGKFFTIGVDKLP 574

Query: 608 IG 609
            G
Sbjct: 575 RG 576


>gi|13810765|gb|AAK40027.1|AF272017_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 285

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/282 (61%), Positives = 225/282 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDG
Sbjct: 3   LGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GI
Sbjct: 63  DSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGI 122

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY 
Sbjct: 123 AVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYE 182

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDE
Sbjct: 183 TGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDE 242

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           SDR G R+VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL
Sbjct: 243 SDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLAL 284


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/544 (38%), Positives = 315/544 (57%), Gaps = 39/544 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 15  IHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE R+
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNIDGDGAAAYRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+ +G+D VDFR  Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 135 TDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I +PD  ++ L+E I GPD PTG VI+  R  I +AY TGRG   +R   
Sbjct: 195 HELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILDAYKTGRGGFRVRAKW 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+RDES      V++  
Sbjct: 255 ETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDVRDESAEDVRIVLVPK 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R   A +++  L+R + L+S   +NM  L+ G  P+   L  +L  ++A R++V+VRR+
Sbjct: 315 NRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEVLSEWLAHRKDVLVRRS 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L     R  +L GL IA  NLDEV+RIIR    P    +++M   W+          
Sbjct: 375 RHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEP----KQVMMARWS---------- 420

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  AIL +RL  L  L   +IR E + L  E  E   +L+S
Sbjct: 421 ---------------LTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKSEIEGLLAS 465

Query: 494 RSRLLGIIKQELLSVKDELDTP-----RRTRIVEGL-LDME--DEDCIVREDMVVTVSHL 545
             +    +  E+  VK +         RRT+  +    D+E   +  I +E + + +S  
Sbjct: 466 DDKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQK 525

Query: 546 GYVK 549
           G+++
Sbjct: 526 GWIR 529


>gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/734 (34%), Positives = 387/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  EDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSRYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TV++  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN  EV +  V
Sbjct: 138 SELGQGTVEYTANFDGTLQEPKYLPARLPNILLNGTTGIAVGMATDIPPHNAREVANALV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A++DNPD  LD L+  I+GPDFPT A +I  R  I+  Y TGRGS+ +R V   E+    
Sbjct: 198 ALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEEG--- 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV++ +P+Q + A +LE+IA  +R K++  + DLRDESD +    ++ + R    D 
Sbjct: 255 --EIVISALPHQTSGAKVLEQIASQMRSKKLPMVEDLRDESDHENPTRLVIVPRSNRVDF 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+  +P    L  IL  ++++R E V RR  Y L 
Sbjct: 313 DQVMNHLFATTDLEKSYRINLNMIGLD-RRPAVKDLREILTEWLSYRRETVRRRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ +IR    P+     L+ R                  
Sbjct: 372 KVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPKPV---LVAR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q  AILEL+L +L  L    IR E + L  E      +L+S  +L 
Sbjct: 411 --------FGLSETQAEAILELKLRQLARLEEMKIRGEQDELAQERDRLQALLASERKLA 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+++        RR+ + +      M + D +  E + + +S  G+V        
Sbjct: 463 TLIKKEIIADAQNYGDARRSPLHQRAEAKAMSEHDFVPSEPVTIVLSESGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLNYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++       + +N  ++ A+  G       SD +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEHVL------MAADNQKLLMASDAGYGFVCTFSDLVARNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L    ++L+      ++D+LL  T+ G+ + FP+  +   +   G   V +    
Sbjct: 623 KAMLTLPENAKVLAPLAIHGDDDMLLAITQAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  +   +VL
Sbjct: 683 AAAGEDTLKWLLVL 696


>gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 743

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 247/718 (34%), Positives = 379/718 (52%), Gaps = 69/718 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    +++ +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M  + ++    + KCA
Sbjct: 12  IRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLKLDPGSGFKKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+AA+Y+A+ R+AQ++++R  L+EGQGNFG++DGD  AA RYTE RL
Sbjct: 72  RVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDNAAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L++ L  D VDFRP YDG   EPVV+ A +PN+L NG  GIAVGMATNIP HN+
Sbjct: 132 TAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHNV 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
           GE+ +  + +I  P    +AL+  ++GPDFPTG V+      I  AY TGRG++ +R   
Sbjct: 192 GELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRARW 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E  S    QIV+TEIPYQ+ KA ++E+IAEL+  +++  +AD+RDES     R+V+E 
Sbjct: 252 EKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDESA-DDLRLVLEP 310

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           + R   A+ ++ QL+R T L+  F++NM  L+G   P+   L   L AF+  R  V+ RR
Sbjct: 311 RNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFLDHRLVVLGRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K   R  VL G  IA  NLDEV+RIIR    P+ A   LM              
Sbjct: 371 SRHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPA---LM-------------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+VQT AIL +RL  L  L   +IR E ++L  E      +L+
Sbjct: 414 ------------AAFGLSDVQTEAILNMRLRSLRRLEEMEIRREHDALSAEKAGLEALLA 461

Query: 493 SRSRLLGIIKQELLSVKDEL--DTP---RRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
                  +I +++   +     DT    RRT +      + +  E  + RE + V +S  
Sbjct: 462 DEGLCWKVIAKQIRETRKTFGGDTALGRRRTELGSAPTAVIVPIEALVEREPITVLLSER 521

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++    +V   Q  G + +     ++ D +       T   +L   S G  +     +
Sbjct: 522 GWLR----AVKGHQEPGEENK----FKEGDALLLALHAQTTDKLLILDSTGRFFTLPADK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRR 659
           L      ARG+          GE +  ++  P D    + L       ++ A   G    
Sbjct: 574 L------ARGRGF--------GEPVRLMLDLPNDADIVSLLVHDPARRLILAASGGRGFV 619

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +  D +   R+GK  M +D+ +  L       ++ + +  +  + + FP++ + V A
Sbjct: 620 VEEKDVLAQTRAGKQVMTVDAGERALLCREVRGDH-VAVIGQNRKLLVFPLTQVPVLA 676


>gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
 gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
          Length = 760

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 252/750 (33%), Positives = 401/750 (53%), Gaps = 74/750 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV +  V +IDNP  +L  +M  ++GPD+PT A +I  +  ++  Y TGRGSI +R
Sbjct: 188 HNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  F V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++E+Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EKLLGSERRLNTLLKKEIQADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG      G+  +  D         ++   +FF S G  Y  
Sbjct: 513 GWI------------RHAKGHDVDAEGLSYKSGDKYLAHARGKSNQQAVFFGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     K
Sbjct: 561 ESHSLP--SARSQGEPITGRLNITAGSAIRQVI-MGEEEQLW-----LVGSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGR 719
            SD +  NRSGK  + L +  E++  +T      ++I+  T  G+ + FPI  +   A  
Sbjct: 613 GSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIVAITNQGRMLLFPIKDLPQLAKG 672

Query: 720 NSVGVRGISLAKG---DQVISMAIVLHADA 746
               +  I  AK    ++++S  I +  DA
Sbjct: 673 KGNKIINIPAAKAKEREEILSHLIAVPKDA 702


>gi|77169132|gb|ABA63503.1| gyrase subunit A [Clostridium perfringens]
 gi|77169148|gb|ABA63511.1| gyrase subunit A [Clostridium perfringens]
 gi|77169152|gb|ABA63513.1| gyrase subunit A [Clostridium perfringens]
 gi|77169154|gb|ABA63514.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas
           albilineans]
          Length = 747

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/708 (34%), Positives = 373/708 (52%), Gaps = 63/708 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ TVD+ PN+DG+  EP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E +RGPD+P+ A I+     ++  YATG GS+  R
Sbjct: 190 HNLNEIVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADLRTIYATGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IVVT +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYEKENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  + +N+  + L+G +P+   L  +L+ ++ FR +
Sbjct: 305 VLVPRSNRVDAEHLMGHLFATTDLERSYRINLNVIGLDG-RPQVKNLKTLLEEWLRFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            VVRR  + L K   R H+L GL +A  NLDEV+RIIR    P+ A   L+ R       
Sbjct: 364 TVVRRLNHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE QT  ILE RL +L  L    IR E ++L  E ++ 
Sbjct: 414 -------------------FALSEEQTDYILETRLRQLARLEEMKIRGEQDALAKEREQL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L+S+++L  +IK EL++   +    RR+ +V  E    +++ + +  E M + +S  
Sbjct: 455 QAVLASKTKLKKLIKDELIADAKKFGDARRSPLVQREAAQAIDETELVPSEPMTIVMSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      +G+  RD D +       +   V F  S G  Y      
Sbjct: 515 GWI--------RAAKSHDVDPAGLAYRDGDSLLAAVRGRSTQQVAFLDSEGRAYSTLAHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L    S   G     +       +  N+  VV A+ HG     +  + 
Sbjct: 567 LP--SARGNGEPLTGRFSPAAGAAFQALA------TGENDTRVVLASSHGYGFITRFENL 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
              N++GK  + L    ++L+  T      + I+  T  G  + FP++
Sbjct: 619 TSRNKAGKAMLNLTPNAKVLAPATVGNADTDRIVAVTSAGHLLAFPVA 666


>gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116]
          Length = 762

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 252/750 (33%), Positives = 405/750 (54%), Gaps = 74/750 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           V+  K      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 ERLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG      G+  +  D         ++   +FF S G  Y  
Sbjct: 513 GWI------------RHAKGHDVDAEGLSYKSGDKYLAHARGKSNQQAVFFGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     K
Sbjct: 561 ESHSLP--SARSQGEPITGRLNITAGSNIRQVI-MGEEEQLW-----LVGSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGR 719
            S+ +  NRSGK  + L +  E+++ +T      ++IL  T  G+ + FPI  +   A  
Sbjct: 613 GSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEILAITNQGRMLLFPIKDLPQLAKG 672

Query: 720 NSVGVRGISLAKG---DQVISMAIVLHADA 746
               +  I  AK    ++V+S  + L   A
Sbjct: 673 KGNKIINIPAAKAKEREEVLSHLMALPQGA 702


>gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H]
 gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H]
          Length = 736

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 243/710 (34%), Positives = 380/710 (53%), Gaps = 62/710 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + + +   Y+ YA++ I+ R++PD+RDGLKPVHRR+L+ M Q+ ++    + KCA
Sbjct: 9   IEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPTSGFKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE RL
Sbjct: 69  RVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAMRYTESRL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD +  D VDFR  YD    EP+VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 129 TEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMATSIPPHNA 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+      +I+ PD+ +  L++++ GPDFPTG +++  R  I  +Y TGRGS   R   
Sbjct: 189 AEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGSFRTRARW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+       I+VTEIPYQV K+ ++E+IA+L+ ++++  + D+RDES     R+V+E 
Sbjct: 249 EVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTTD-IRLVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K +G   +V++  L+R T+L++ FS+NM  L G + P   +L  +L+A++    EV+VRR
Sbjct: 308 KTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVHEVLVRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L     R  +L G      NLDEV+RIIR    P+ +   LM              
Sbjct: 368 SNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPKVS---LM-------------- 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++VQ  A+L +RL  L  L   +IR E + L  E K    +L 
Sbjct: 411 ------------ATFSLTDVQAEAVLNMRLRSLRRLEEMEIRRERDKLADEQKALETLLG 458

Query: 493 SRSRLLGIIKQEL-LSVKDELDTP---RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLG 546
           S  R    I ++L  ++K     P   RRT I     L+D+     I RE + V +S  G
Sbjct: 459 SERRRWTRIGKDLDGTIKKFGSGPLGERRTLIAAAPELIDISAALEIDREPLTVLLSREG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++   +  +    +G + + G    DE +++      +   +   SS G  Y  K   L
Sbjct: 519 WIR--AMKGHGLDPQGHRFKEG----DEGWLS--VECQSTDRLCLISSSGKAYTIKAADL 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+    ++ + Q +R+ T+ P  ++        +  A   G +     +  +
Sbjct: 571 PRG--RGFGQPFRTVVDVPQEDRVVTLFPVSDE----GRRLIASAAGRGMIVSE--AGLV 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR---FPISAI 713
              R+GK    +   DE+ +   C       + T LGQ  R   FP+  +
Sbjct: 623 AEKRTGKQVFNIKDGDEVFA---CVPVGGTHVLT-LGQNKRALIFPLEQV 668


>gi|77169138|gb|ABA63506.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TGRG IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGRGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169442|gb|ABA63658.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  +V F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYVNFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169256|gb|ABA63565.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
 gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
          Length = 743

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 256/741 (34%), Positives = 387/741 (52%), Gaps = 73/741 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    K+ K AR  
Sbjct: 10  LPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAKFKKSARTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQD+S R  L++GQGN+GS D DP   AA RYTE RL 
Sbjct: 70  GDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPD-DPKSFAAMRYTESRLT 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL +LG+ TVD+  N+D + +EPV+L AR PN+L+NG  GIAVGMAT+IP HNL 
Sbjct: 129 AYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATDIPPHNLR 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV + C+ ++D+P+  LD L   I+GPD+PT A +I     I+  Y +G GSI +R  + 
Sbjct: 189 EVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSIKMR--AK 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIE 313
            E+  G+   IV+T +P+QV+ A +LE+IA  +  K++  I DLRDESD +     +VI 
Sbjct: 247 YEQEDGN---IVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENPTRLLVIP 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +   AD +++ L+  T L+  + V  NM+ L+G +P+   L  IL  ++AFR E V +
Sbjct: 304 RSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDG-RPKVKGLRDILVEWLAFRTETVRK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM+R           
Sbjct: 363 RLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHPKPV---LMER----------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            ++++QT AILEL+L  L  L    IR E + L +E       L
Sbjct: 409 ---------------FGITDIQTEAILELKLRHLAKLEEMKIRGEQDELELERAALEKTL 453

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S   L  +I++EL    ++    RR+ IV  +    +E    I  E + V +S  G++ 
Sbjct: 454 GSPRLLNRLIRKELERDAEKYGDDRRSPIVARDAAQALETTALITNEPLTVILSEKGWI- 512

Query: 550 RVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                      R  KG     + +  R  D   D     T   V    S G  Y      
Sbjct: 513 -----------RAAKGHDIDVASLNYRSGDGFLDAVKCRTTQPVYILDSTGRAYSTATHD 561

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+   G     ++    D+      + V A+  G   R +L + 
Sbjct: 562 LP--SARTQGEPLTGRLNPPPGSLFLHLLAGQPDD------WYVLASHFGYGFRVQLKEL 613

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL-GQCVRFPISAIRVFA---GRNS 721
           +  N++GK+ + L    ++L       E D L    L G+ + FP++ +   A   G   
Sbjct: 614 LSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTLQGRLLIFPVAELPALAKGKGNKL 673

Query: 722 VGVRGISLAKGDQVISMAIVL 742
           + +    L  G   +  A+ L
Sbjct: 674 IQIPTADLTAGKDYVIAAVAL 694


>gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens]
 gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens]
          Length = 751

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 252/730 (34%), Positives = 389/730 (53%), Gaps = 76/730 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 16  LTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 76  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSHY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 135 ADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y +G GSI +R +   E
Sbjct: 195 ANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIKMRAIYTQE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDESD +    ++ + R 
Sbjct: 255 K-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRS 309

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+  + V  NM+ L+G KP    L+ IL  ++ FR   V RR 
Sbjct: 310 NRVDIESLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLLAILTEWLEFRLATVKRRL 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L+ R             
Sbjct: 369 QFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGLISR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q  AILE++L  L  L    +R EL+ L  E       L+S
Sbjct: 413 -------------FNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+E+   +DE   PRR+ I+  E    +++ED +  E + V +S  G+V+  
Sbjct: 460 HFLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEPITVVLSKNGWVR-- 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                 A+     G+       ++F     +  T+  VLFF   G VY      LP  S 
Sbjct: 518 -----AAKGHDVDGKELSYKAGDEFKAQT-LARTNQQVLFFDGEGKVYSLPGHVLP--SA 569

Query: 612 QARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           + +G+ L   L+  +G     I+   PE +       V+ AT  G     K+ D    NR
Sbjct: 570 RGQGEPLTGKLNPAEGVLFEAIVGGEPEQK-------VLLATDSGYGFIAKIEDLYVKNR 622

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +GK  +KL  +  IL          + +   T +G+ + F +  +             +S
Sbjct: 623 NGKACIKLSEKSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL-----------PELS 671

Query: 729 LAKGDQVISM 738
             KG+++IS+
Sbjct: 672 RGKGNKLISI 681


>gi|77168996|gb|ABA63435.1| gyrase subunit A [Clostridium perfringens]
 gi|77168998|gb|ABA63436.1| gyrase subunit A [Clostridium perfringens]
 gi|77169002|gb|ABA63438.1| gyrase subunit A [Clostridium perfringens]
 gi|77169012|gb|ABA63443.1| gyrase subunit A [Clostridium perfringens]
 gi|77169014|gb|ABA63444.1| gyrase subunit A [Clostridium perfringens]
 gi|77169016|gb|ABA63445.1| gyrase subunit A [Clostridium perfringens]
 gi|77169018|gb|ABA63446.1| gyrase subunit A [Clostridium perfringens]
 gi|77169024|gb|ABA63449.1| gyrase subunit A [Clostridium perfringens]
 gi|77169030|gb|ABA63452.1| gyrase subunit A [Clostridium perfringens]
 gi|77169032|gb|ABA63453.1| gyrase subunit A [Clostridium perfringens]
 gi|77169034|gb|ABA63454.1| gyrase subunit A [Clostridium perfringens]
 gi|77169072|gb|ABA63473.1| gyrase subunit A [Clostridium perfringens]
 gi|77169102|gb|ABA63488.1| gyrase subunit A [Clostridium perfringens]
 gi|77169104|gb|ABA63489.1| gyrase subunit A [Clostridium perfringens]
 gi|77169194|gb|ABA63534.1| gyrase subunit A [Clostridium perfringens]
 gi|77169196|gb|ABA63535.1| gyrase subunit A [Clostridium perfringens]
 gi|77169206|gb|ABA63540.1| gyrase subunit A [Clostridium perfringens]
 gi|77169208|gb|ABA63541.1| gyrase subunit A [Clostridium perfringens]
 gi|77169240|gb|ABA63557.1| gyrase subunit A [Clostridium perfringens]
 gi|77169276|gb|ABA63575.1| gyrase subunit A [Clostridium perfringens]
 gi|77169332|gb|ABA63603.1| gyrase subunit A [Clostridium perfringens]
 gi|77169334|gb|ABA63604.1| gyrase subunit A [Clostridium perfringens]
 gi|77169374|gb|ABA63624.1| gyrase subunit A [Clostridium perfringens]
 gi|77169380|gb|ABA63627.1| gyrase subunit A [Clostridium perfringens]
 gi|77169396|gb|ABA63635.1| gyrase subunit A [Clostridium perfringens]
 gi|77169398|gb|ABA63636.1| gyrase subunit A [Clostridium perfringens]
 gi|77169444|gb|ABA63659.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169106|gb|ABA63490.1| gyrase subunit A [Clostridium perfringens]
 gi|77169108|gb|ABA63491.1| gyrase subunit A [Clostridium perfringens]
 gi|77169110|gb|ABA63492.1| gyrase subunit A [Clostridium perfringens]
 gi|77169112|gb|ABA63493.1| gyrase subunit A [Clostridium perfringens]
 gi|77169114|gb|ABA63494.1| gyrase subunit A [Clostridium perfringens]
 gi|77169116|gb|ABA63495.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRRTRFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae]
          Length = 751

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 258/762 (33%), Positives = 393/762 (51%), Gaps = 84/762 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   GVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG  TV + PN+DG+  EP  L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV    VA+++NP  DL+ LM+ I  PD+PT A +I  +  I+  Y TGRGSI +R
Sbjct: 187 HNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDIQKIYQTGRGSIRLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  I     D    V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVWEI-----DDGHAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++  L+  T L+  + V  NM+ L+  +P    L+ IL  ++ FR E
Sbjct: 302 VIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDN-RPAVKGLVEILNEWLLFRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     L+ R       
Sbjct: 361 TVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKAV---LVAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  +ILEL+L  L  L    +R E + L  E  + 
Sbjct: 411 -------------------FALSETQAESILELKLRHLAKLEEFKLRGEQDDLAKERDQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+ +        RR+ + E +    M + D +  E + + +S +
Sbjct: 452 QAILGSERRLNTLIKKEIETDAQTYGDDRRSPLKERIEAKAMNEHDILPSEPVTIILSVM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     + +  +  D         T+  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPTNLNYKAGDGFCSAARGKTNQPVVFLDSTGRSYSL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+L  G  I  ++   E++        + A+  G      
Sbjct: 560 DPLDLP--SARGQGEPLTGKLALPPGATIEHVLTAAEEQK------YLLASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLT-TKLGQCVRFPISAIRVFAGR 719
            SD +  N++GK  + L S  ++L+ +E   ++ D+LL  TK G+ + FP+S +      
Sbjct: 612 FSDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLAITKAGRMLIFPVSEL------ 665

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                  +S  KG+++I+++      A  D+ + ++  +  Q
Sbjct: 666 -----PQLSKGKGNKIINISAA--QSASRDDLLVWLMFLQPQ 700


>gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 754

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 261/790 (33%), Positives = 414/790 (52%), Gaps = 84/790 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V H+E   GD   I+VT +P+QV+ A +LE+IA +++ K  +   +ADLRDESD +   
Sbjct: 250 AVYHVE--DGD---IIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
             V+I +      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR
Sbjct: 305 RIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDG-KPQLKNLRALLVEWLEFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P+ +   L+ R     
Sbjct: 364 VKTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKAS---LIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q   IL+ RL +L  L    +R E + L  E  
Sbjct: 416 ---------------------FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   +L S ++L  +++ ELL   +     RR+ IVE      + + D +  E + V +S
Sbjct: 455 KLQALLGSEAKLKKLVRTELLKDAETYGDDRRSPIVERAEAKALSEHDLLPNEKVTVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG     +G+  +  D    L    ++   +F  S G  Y
Sbjct: 515 EKGWV------------RSAKGHDIDATGLSYKAGDGFKALAAGRSNQFAVFVDSTGRSY 562

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G     ++  P+D    + LYV+ A+  G    
Sbjct: 563 SVPAHTLP--SARGQGEPLTGRLTPPPGATFECVL-MPDD----DGLYVI-ASDAGYGFV 614

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D    N++GK  + L +  ++++       + N +   T  G+ + F IS +    
Sbjct: 615 VKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRESNWLASVTTEGRLLVFKISDLPQLG 674

Query: 718 ---GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G   +G+ G  +A  ++ ++   VL   A           + A +R +S   +++  
Sbjct: 675 KGKGNKIIGISGERVASREEYVTDIAVLPEGATL--------VLQAGKRTLSLKADDLEH 726

Query: 775 LKNDSSVEGN 784
            K +    GN
Sbjct: 727 YKGERGRRGN 736


>gi|77168984|gb|ABA63429.1| gyrase subunit A [Clostridium perfringens]
 gi|77168986|gb|ABA63430.1| gyrase subunit A [Clostridium perfringens]
 gi|77168990|gb|ABA63432.1| gyrase subunit A [Clostridium perfringens]
 gi|77168994|gb|ABA63434.1| gyrase subunit A [Clostridium perfringens]
 gi|77169000|gb|ABA63437.1| gyrase subunit A [Clostridium perfringens]
 gi|77169004|gb|ABA63439.1| gyrase subunit A [Clostridium perfringens]
 gi|77169006|gb|ABA63440.1| gyrase subunit A [Clostridium perfringens]
 gi|77169008|gb|ABA63441.1| gyrase subunit A [Clostridium perfringens]
 gi|77169010|gb|ABA63442.1| gyrase subunit A [Clostridium perfringens]
 gi|77169020|gb|ABA63447.1| gyrase subunit A [Clostridium perfringens]
 gi|77169022|gb|ABA63448.1| gyrase subunit A [Clostridium perfringens]
 gi|77169026|gb|ABA63450.1| gyrase subunit A [Clostridium perfringens]
 gi|77169028|gb|ABA63451.1| gyrase subunit A [Clostridium perfringens]
 gi|77169036|gb|ABA63455.1| gyrase subunit A [Clostridium perfringens]
 gi|77169038|gb|ABA63456.1| gyrase subunit A [Clostridium perfringens]
 gi|77169040|gb|ABA63457.1| gyrase subunit A [Clostridium perfringens]
 gi|77169042|gb|ABA63458.1| gyrase subunit A [Clostridium perfringens]
 gi|77169044|gb|ABA63459.1| gyrase subunit A [Clostridium perfringens]
 gi|77169046|gb|ABA63460.1| gyrase subunit A [Clostridium perfringens]
 gi|77169048|gb|ABA63461.1| gyrase subunit A [Clostridium perfringens]
 gi|77169050|gb|ABA63462.1| gyrase subunit A [Clostridium perfringens]
 gi|77169052|gb|ABA63463.1| gyrase subunit A [Clostridium perfringens]
 gi|77169054|gb|ABA63464.1| gyrase subunit A [Clostridium perfringens]
 gi|77169056|gb|ABA63465.1| gyrase subunit A [Clostridium perfringens]
 gi|77169058|gb|ABA63466.1| gyrase subunit A [Clostridium perfringens]
 gi|77169060|gb|ABA63467.1| gyrase subunit A [Clostridium perfringens]
 gi|77169062|gb|ABA63468.1| gyrase subunit A [Clostridium perfringens]
 gi|77169064|gb|ABA63469.1| gyrase subunit A [Clostridium perfringens]
 gi|77169066|gb|ABA63470.1| gyrase subunit A [Clostridium perfringens]
 gi|77169068|gb|ABA63471.1| gyrase subunit A [Clostridium perfringens]
 gi|77169070|gb|ABA63472.1| gyrase subunit A [Clostridium perfringens]
 gi|77169074|gb|ABA63474.1| gyrase subunit A [Clostridium perfringens]
 gi|77169076|gb|ABA63475.1| gyrase subunit A [Clostridium perfringens]
 gi|77169078|gb|ABA63476.1| gyrase subunit A [Clostridium perfringens]
 gi|77169080|gb|ABA63477.1| gyrase subunit A [Clostridium perfringens]
 gi|77169084|gb|ABA63479.1| gyrase subunit A [Clostridium perfringens]
 gi|77169086|gb|ABA63480.1| gyrase subunit A [Clostridium perfringens]
 gi|77169088|gb|ABA63481.1| gyrase subunit A [Clostridium perfringens]
 gi|77169090|gb|ABA63482.1| gyrase subunit A [Clostridium perfringens]
 gi|77169092|gb|ABA63483.1| gyrase subunit A [Clostridium perfringens]
 gi|77169094|gb|ABA63484.1| gyrase subunit A [Clostridium perfringens]
 gi|77169096|gb|ABA63485.1| gyrase subunit A [Clostridium perfringens]
 gi|77169098|gb|ABA63486.1| gyrase subunit A [Clostridium perfringens]
 gi|77169118|gb|ABA63496.1| gyrase subunit A [Clostridium perfringens]
 gi|77169120|gb|ABA63497.1| gyrase subunit A [Clostridium perfringens]
 gi|77169122|gb|ABA63498.1| gyrase subunit A [Clostridium perfringens]
 gi|77169124|gb|ABA63499.1| gyrase subunit A [Clostridium perfringens]
 gi|77169126|gb|ABA63500.1| gyrase subunit A [Clostridium perfringens]
 gi|77169128|gb|ABA63501.1| gyrase subunit A [Clostridium perfringens]
 gi|77169134|gb|ABA63504.1| gyrase subunit A [Clostridium perfringens]
 gi|77169136|gb|ABA63505.1| gyrase subunit A [Clostridium perfringens]
 gi|77169140|gb|ABA63507.1| gyrase subunit A [Clostridium perfringens]
 gi|77169142|gb|ABA63508.1| gyrase subunit A [Clostridium perfringens]
 gi|77169144|gb|ABA63509.1| gyrase subunit A [Clostridium perfringens]
 gi|77169156|gb|ABA63515.1| gyrase subunit A [Clostridium perfringens]
 gi|77169160|gb|ABA63517.1| gyrase subunit A [Clostridium perfringens]
 gi|77169162|gb|ABA63518.1| gyrase subunit A [Clostridium perfringens]
 gi|77169164|gb|ABA63519.1| gyrase subunit A [Clostridium perfringens]
 gi|77169166|gb|ABA63520.1| gyrase subunit A [Clostridium perfringens]
 gi|77169168|gb|ABA63521.1| gyrase subunit A [Clostridium perfringens]
 gi|77169170|gb|ABA63522.1| gyrase subunit A [Clostridium perfringens]
 gi|77169172|gb|ABA63523.1| gyrase subunit A [Clostridium perfringens]
 gi|77169174|gb|ABA63524.1| gyrase subunit A [Clostridium perfringens]
 gi|77169176|gb|ABA63525.1| gyrase subunit A [Clostridium perfringens]
 gi|77169178|gb|ABA63526.1| gyrase subunit A [Clostridium perfringens]
 gi|77169182|gb|ABA63528.1| gyrase subunit A [Clostridium perfringens]
 gi|77169188|gb|ABA63531.1| gyrase subunit A [Clostridium perfringens]
 gi|77169192|gb|ABA63533.1| gyrase subunit A [Clostridium perfringens]
 gi|77169198|gb|ABA63536.1| gyrase subunit A [Clostridium perfringens]
 gi|77169200|gb|ABA63537.1| gyrase subunit A [Clostridium perfringens]
 gi|77169202|gb|ABA63538.1| gyrase subunit A [Clostridium perfringens]
 gi|77169204|gb|ABA63539.1| gyrase subunit A [Clostridium perfringens]
 gi|77169210|gb|ABA63542.1| gyrase subunit A [Clostridium perfringens]
 gi|77169214|gb|ABA63544.1| gyrase subunit A [Clostridium perfringens]
 gi|77169216|gb|ABA63545.1| gyrase subunit A [Clostridium perfringens]
 gi|77169218|gb|ABA63546.1| gyrase subunit A [Clostridium perfringens]
 gi|77169220|gb|ABA63547.1| gyrase subunit A [Clostridium perfringens]
 gi|77169222|gb|ABA63548.1| gyrase subunit A [Clostridium perfringens]
 gi|77169224|gb|ABA63549.1| gyrase subunit A [Clostridium perfringens]
 gi|77169226|gb|ABA63550.1| gyrase subunit A [Clostridium perfringens]
 gi|77169228|gb|ABA63551.1| gyrase subunit A [Clostridium perfringens]
 gi|77169230|gb|ABA63552.1| gyrase subunit A [Clostridium perfringens]
 gi|77169232|gb|ABA63553.1| gyrase subunit A [Clostridium perfringens]
 gi|77169234|gb|ABA63554.1| gyrase subunit A [Clostridium perfringens]
 gi|77169236|gb|ABA63555.1| gyrase subunit A [Clostridium perfringens]
 gi|77169238|gb|ABA63556.1| gyrase subunit A [Clostridium perfringens]
 gi|77169242|gb|ABA63558.1| gyrase subunit A [Clostridium perfringens]
 gi|77169244|gb|ABA63559.1| gyrase subunit A [Clostridium perfringens]
 gi|77169246|gb|ABA63560.1| gyrase subunit A [Clostridium perfringens]
 gi|77169248|gb|ABA63561.1| gyrase subunit A [Clostridium perfringens]
 gi|77169250|gb|ABA63562.1| gyrase subunit A [Clostridium perfringens]
 gi|77169252|gb|ABA63563.1| gyrase subunit A [Clostridium perfringens]
 gi|77169254|gb|ABA63564.1| gyrase subunit A [Clostridium perfringens]
 gi|77169258|gb|ABA63566.1| gyrase subunit A [Clostridium perfringens]
 gi|77169260|gb|ABA63567.1| gyrase subunit A [Clostridium perfringens]
 gi|77169262|gb|ABA63568.1| gyrase subunit A [Clostridium perfringens]
 gi|77169264|gb|ABA63569.1| gyrase subunit A [Clostridium perfringens]
 gi|77169266|gb|ABA63570.1| gyrase subunit A [Clostridium perfringens]
 gi|77169268|gb|ABA63571.1| gyrase subunit A [Clostridium perfringens]
 gi|77169270|gb|ABA63572.1| gyrase subunit A [Clostridium perfringens]
 gi|77169272|gb|ABA63573.1| gyrase subunit A [Clostridium perfringens]
 gi|77169274|gb|ABA63574.1| gyrase subunit A [Clostridium perfringens]
 gi|77169278|gb|ABA63576.1| gyrase subunit A [Clostridium perfringens]
 gi|77169280|gb|ABA63577.1| gyrase subunit A [Clostridium perfringens]
 gi|77169282|gb|ABA63578.1| gyrase subunit A [Clostridium perfringens]
 gi|77169284|gb|ABA63579.1| gyrase subunit A [Clostridium perfringens]
 gi|77169286|gb|ABA63580.1| gyrase subunit A [Clostridium perfringens]
 gi|77169288|gb|ABA63581.1| gyrase subunit A [Clostridium perfringens]
 gi|77169290|gb|ABA63582.1| gyrase subunit A [Clostridium perfringens]
 gi|77169292|gb|ABA63583.1| gyrase subunit A [Clostridium perfringens]
 gi|77169296|gb|ABA63585.1| gyrase subunit A [Clostridium perfringens]
 gi|77169298|gb|ABA63586.1| gyrase subunit A [Clostridium perfringens]
 gi|77169300|gb|ABA63587.1| gyrase subunit A [Clostridium perfringens]
 gi|77169302|gb|ABA63588.1| gyrase subunit A [Clostridium perfringens]
 gi|77169304|gb|ABA63589.1| gyrase subunit A [Clostridium perfringens]
 gi|77169306|gb|ABA63590.1| gyrase subunit A [Clostridium perfringens]
 gi|77169308|gb|ABA63591.1| gyrase subunit A [Clostridium perfringens]
 gi|77169310|gb|ABA63592.1| gyrase subunit A [Clostridium perfringens]
 gi|77169312|gb|ABA63593.1| gyrase subunit A [Clostridium perfringens]
 gi|77169314|gb|ABA63594.1| gyrase subunit A [Clostridium perfringens]
 gi|77169316|gb|ABA63595.1| gyrase subunit A [Clostridium perfringens]
 gi|77169318|gb|ABA63596.1| gyrase subunit A [Clostridium perfringens]
 gi|77169320|gb|ABA63597.1| gyrase subunit A [Clostridium perfringens]
 gi|77169322|gb|ABA63598.1| gyrase subunit A [Clostridium perfringens]
 gi|77169324|gb|ABA63599.1| gyrase subunit A [Clostridium perfringens]
 gi|77169326|gb|ABA63600.1| gyrase subunit A [Clostridium perfringens]
 gi|77169330|gb|ABA63602.1| gyrase subunit A [Clostridium perfringens]
 gi|77169336|gb|ABA63605.1| gyrase subunit A [Clostridium perfringens]
 gi|77169338|gb|ABA63606.1| gyrase subunit A [Clostridium perfringens]
 gi|77169340|gb|ABA63607.1| gyrase subunit A [Clostridium perfringens]
 gi|77169342|gb|ABA63608.1| gyrase subunit A [Clostridium perfringens]
 gi|77169344|gb|ABA63609.1| gyrase subunit A [Clostridium perfringens]
 gi|77169346|gb|ABA63610.1| gyrase subunit A [Clostridium perfringens]
 gi|77169348|gb|ABA63611.1| gyrase subunit A [Clostridium perfringens]
 gi|77169354|gb|ABA63614.1| gyrase subunit A [Clostridium perfringens]
 gi|77169356|gb|ABA63615.1| gyrase subunit A [Clostridium perfringens]
 gi|77169358|gb|ABA63616.1| gyrase subunit A [Clostridium perfringens]
 gi|77169360|gb|ABA63617.1| gyrase subunit A [Clostridium perfringens]
 gi|77169362|gb|ABA63618.1| gyrase subunit A [Clostridium perfringens]
 gi|77169364|gb|ABA63619.1| gyrase subunit A [Clostridium perfringens]
 gi|77169366|gb|ABA63620.1| gyrase subunit A [Clostridium perfringens]
 gi|77169368|gb|ABA63621.1| gyrase subunit A [Clostridium perfringens]
 gi|77169370|gb|ABA63622.1| gyrase subunit A [Clostridium perfringens]
 gi|77169376|gb|ABA63625.1| gyrase subunit A [Clostridium perfringens]
 gi|77169378|gb|ABA63626.1| gyrase subunit A [Clostridium perfringens]
 gi|77169382|gb|ABA63628.1| gyrase subunit A [Clostridium perfringens]
 gi|77169384|gb|ABA63629.1| gyrase subunit A [Clostridium perfringens]
 gi|77169386|gb|ABA63630.1| gyrase subunit A [Clostridium perfringens]
 gi|77169388|gb|ABA63631.1| gyrase subunit A [Clostridium perfringens]
 gi|77169390|gb|ABA63632.1| gyrase subunit A [Clostridium perfringens]
 gi|77169392|gb|ABA63633.1| gyrase subunit A [Clostridium perfringens]
 gi|77169394|gb|ABA63634.1| gyrase subunit A [Clostridium perfringens]
 gi|77169400|gb|ABA63637.1| gyrase subunit A [Clostridium perfringens]
 gi|77169402|gb|ABA63638.1| gyrase subunit A [Clostridium perfringens]
 gi|77169408|gb|ABA63641.1| gyrase subunit A [Clostridium perfringens]
 gi|77169410|gb|ABA63642.1| gyrase subunit A [Clostridium perfringens]
 gi|77169412|gb|ABA63643.1| gyrase subunit A [Clostridium perfringens]
 gi|77169414|gb|ABA63644.1| gyrase subunit A [Clostridium perfringens]
 gi|77169416|gb|ABA63645.1| gyrase subunit A [Clostridium perfringens]
 gi|77169418|gb|ABA63646.1| gyrase subunit A [Clostridium perfringens]
 gi|77169420|gb|ABA63647.1| gyrase subunit A [Clostridium perfringens]
 gi|77169422|gb|ABA63648.1| gyrase subunit A [Clostridium perfringens]
 gi|77169424|gb|ABA63649.1| gyrase subunit A [Clostridium perfringens]
 gi|77169426|gb|ABA63650.1| gyrase subunit A [Clostridium perfringens]
 gi|77169428|gb|ABA63651.1| gyrase subunit A [Clostridium perfringens]
 gi|77169430|gb|ABA63652.1| gyrase subunit A [Clostridium perfringens]
 gi|77169432|gb|ABA63653.1| gyrase subunit A [Clostridium perfringens]
 gi|77169434|gb|ABA63654.1| gyrase subunit A [Clostridium perfringens]
 gi|77169436|gb|ABA63655.1| gyrase subunit A [Clostridium perfringens]
 gi|77169438|gb|ABA63656.1| gyrase subunit A [Clostridium perfringens]
 gi|77169440|gb|ABA63657.1| gyrase subunit A [Clostridium perfringens]
 gi|77169446|gb|ABA63660.1| gyrase subunit A [Clostridium perfringens]
 gi|77169448|gb|ABA63661.1| gyrase subunit A [Clostridium perfringens]
 gi|77169450|gb|ABA63662.1| gyrase subunit A [Clostridium perfringens]
 gi|77169452|gb|ABA63663.1| gyrase subunit A [Clostridium perfringens]
 gi|77169454|gb|ABA63664.1| gyrase subunit A [Clostridium perfringens]
 gi|77169456|gb|ABA63665.1| gyrase subunit A [Clostridium perfringens]
 gi|77169458|gb|ABA63666.1| gyrase subunit A [Clostridium perfringens]
 gi|77169460|gb|ABA63667.1| gyrase subunit A [Clostridium perfringens]
 gi|77169462|gb|ABA63668.1| gyrase subunit A [Clostridium perfringens]
 gi|77169464|gb|ABA63669.1| gyrase subunit A [Clostridium perfringens]
 gi|77169466|gb|ABA63670.1| gyrase subunit A [Clostridium perfringens]
 gi|77169468|gb|ABA63671.1| gyrase subunit A [Clostridium perfringens]
 gi|77169470|gb|ABA63672.1| gyrase subunit A [Clostridium perfringens]
 gi|77169472|gb|ABA63673.1| gyrase subunit A [Clostridium perfringens]
 gi|77169474|gb|ABA63674.1| gyrase subunit A [Clostridium perfringens]
 gi|77169476|gb|ABA63675.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/307 (57%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 260/783 (33%), Positives = 407/783 (51%), Gaps = 84/783 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 16  LTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 76  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSHY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 135 ADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y +G GSI +R +   E
Sbjct: 195 ANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAIYESGNGSIKMRAIYTQE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDESD +    ++ + R 
Sbjct: 255 K-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRS 309

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+  + V  NM+ L+G KP    L+ IL  ++ FR   V RR 
Sbjct: 310 NRVDIESLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLLAILTEWLEFRLATVKRRL 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L+ R             
Sbjct: 369 QFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQP---KQGLISR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q  AILE++L  L  L    +R EL+ L  E       L+S
Sbjct: 413 -------------FNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  ++K+E+   +DE   PR + I+  E    +++ED +  E + V +S  G+V+  
Sbjct: 460 HSLLKELVKEEITKDRDEFGDPRLSPIITREDSQALKEEDILPNEPITVVLSKNGWVR-- 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                 A+     G+       ++F     +  T+  VLFF   G VY      LP  S 
Sbjct: 518 -----AAKGHDVDGKELSYKAGDEFKAQT-LARTNQQVLFFDGEGKVYSLPGHVLP--SA 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + +G+ L   L+  +G     I+    ++       V+ AT  G     K+ D    NR+
Sbjct: 570 RGQGEPLTGKLNPAEGVLFEAIVGGEPEQK------VLLATDSGYGFIAKIEDLYVKNRN 623

Query: 672 GKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK  +KL     IL          + +   T +G+ + F +  +             +S 
Sbjct: 624 GKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL-----------PELSR 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMS--------AQRRLISGDTEEITSLKNDSSV 781
            KG+++IS+ +        +E I  M+ ++        A +R  +   E++T  K +   
Sbjct: 673 GKGNKLISIPVA--KAVSREEYIVDMQVLTTNDSLTVYAGKRHFTLKGEDLTHYKGERGR 730

Query: 782 EGN 784
            GN
Sbjct: 731 RGN 733


>gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea
           MMB-1]
 gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1]
          Length = 756

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 260/815 (31%), Positives = 434/815 (53%), Gaps = 90/815 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR 
Sbjct: 12  TLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSART 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL
Sbjct: 72  VGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL ++ + TVD+ PN+DG+ +EP VL AR PN+L+NG  GIAVGMAT++P HNL
Sbjct: 131 SKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            E+ + CV +++NP  +LD L+E ++GPDFPTG  +I  R+ ++  Y  G+G +  R   
Sbjct: 191 REIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYELGKGQVKARARY 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE       +IVV E+P+QV+ + +LE++A  ++ K++  + DLRDESD +     + +
Sbjct: 251 RIEDG-----EIVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDESDHENPTRFVIV 305

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVV 370
            + +  D   ++  L+  T L+  + VNM  + L+G  P+   L   +K ++ FR +VV 
Sbjct: 306 PKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGL-PQVKGLRAFIKEWLTFRIDVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R ++ L+K  +R H+L GL +A  N+DEV+ IIR   N +  + EL++R          
Sbjct: 365 KRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIR---NEDKPKEELIKR---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q  AILEL+L  L  L    I++E + L  E ++   +
Sbjct: 412 ----------------FGLSDSQAEAILELKLRHLAKLEEMRIKSEQDELNKEREQLEAL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S  +L  +I +E+    ++    RRT ++E        +ED +  + + V +S  G++
Sbjct: 456 LGSDRKLKKLITEEIKEAIEDFGDERRTPLIERKEAQAFSEEDLLSNDPVTVVLSKQGWI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVW 604
                       R  KG    V        D F++S    T+ +++  +S G  Y  K  
Sbjct: 516 ------------RAAKGHDIDVTGLSYKSGDEFLLSAKGRTNQTLVLIASNGRTYSLKAH 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ +   +SL +G  I   +   E+       + + A+  G     +L D
Sbjct: 564 TLP--SARGQGEPITGRISLEKGATIVAAVLDSEEA------HYLLASDAGYGFVAQLKD 615

Query: 665 FIQINRSGKIAMKLDSRDEILS-VETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSV 722
               N++GK  + L S  E++S V+  + E D +++ +  G+ + F + ++   A     
Sbjct: 616 LYAKNKAGKATLSLPSNAEVISPVKVESPEGDKVVVVSNEGRMLAFSVKSLPQMAK---- 671

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                   KG++++S  I     AD +E +  M  + +   L++   +   SL  +  ++
Sbjct: 672 -------GKGNKMLS--IPSSRAADREELVIAMATIQSNDLLVAHSGKRFLSLA-EKDLQ 721

Query: 783 GNISEERCQELKLKEQF----ILTVSEKGFGKRTS 813
             + E   + LKL   F    +L V +KG GK  S
Sbjct: 722 EYVGERGRRGLKLPRGFQRIDMLEV-KKGEGKAVS 755


>gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 748

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/742 (33%), Positives = 392/742 (52%), Gaps = 74/742 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +
Sbjct: 187 PHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAV--WKKEDG---EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP   TL  IL  ++ FR 
Sbjct: 302 IVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKTLHTILTEWLVFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  + L+K  +R H+L GL IA  N+DE + IIR    P+TA   LM R      
Sbjct: 361 TTVTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTA---LMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL LRL  L  L   +++ E + L  E  E
Sbjct: 412 --------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLTLGSERRLNTLIKKEIQADAKVFASPRRSPLVERAEAKAISESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  R  D         ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 718 --GRNSVGVRGISLAKGDQVIS 737
             G   + +   +  +G+++++
Sbjct: 672 GKGNKIINISAQAAKEGNELLA 693


>gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 739

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/543 (37%), Positives = 318/543 (58%), Gaps = 39/543 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++ +  + KCA
Sbjct: 11  VEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLRLDPDAGFKKCA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A Y+AL R+AQD++ R  L++GQGNFG++DGD  AA RYTE RL
Sbjct: 71  RIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDGAAAYRYTEARL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+ +  D VD RP Y+    EP VL A +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 131 TEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAVGMATSIPPHNA 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
           G+V D  +A+I+NP  D   L++ ++GPDFPTG +++  R  +  AY TGRG   +R   
Sbjct: 191 GQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYETGRGGFRVRARW 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E       +I++TEIPYQV KA ++E++A L+ EK++  +AD+RDES  +  R+V+E 
Sbjct: 251 HKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDEST-ETVRIVLEP 309

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG-ILKAFVAFREEVVVRR 372
           K R  + DV++  ++R T+L+S F +NM  L+  +  R   +  +L+ ++  R EV++RR
Sbjct: 310 KSRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWLDHRHEVLIRR 369

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L     R  +L G  +   NLDEV+RI+R    P+ A                LI 
Sbjct: 370 STHRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAA----------------LI- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+++Q  ++L +RL  L  L   +IR E   L  E K+   +L 
Sbjct: 413 ------------AAFSLTDMQAESVLNMRLRSLRKLEEMEIRREHAKLSKERKDLDALLK 460

Query: 493 SRSRLLGIIKQELLSVKDELDT----PRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
           S       I  E+ +V+D+  +     RRT I      +++  E  + RE + V +S  G
Sbjct: 461 SEPLRWKRIAHEVAAVRDQFGSGKLGDRRTDIAGPPATVEVAAEAFVEREPITVILSEKG 520

Query: 547 YVK 549
           +++
Sbjct: 521 WMR 523


>gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 730

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 247/726 (34%), Positives = 381/726 (52%), Gaps = 77/726 (10%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+
Sbjct: 3   VIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYE 62

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+
Sbjct: 63  AMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADW 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   L
Sbjct: 122 VPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTL 181

Query: 214 DALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +     +V++ +P
Sbjct: 182 DQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-----VVISALP 236

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRY 330
           +QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+  ++N L+  
Sbjct: 237 HQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFAT 296

Query: 331 TSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L K   R H+L 
Sbjct: 297 TDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL +A  N+DEV+ IIR    P+ A   LM R                            
Sbjct: 356 GLLVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------------------FG 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL + 
Sbjct: 387 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 446

Query: 509 KDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
                  RR+ +   E    M + D +  E + + +S +G+V            R  KG 
Sbjct: 447 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGH 494

Query: 567 ----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LIN 620
                G+  +  D         ++  V+F  S G  Y       PI  P ARG+   L  
Sbjct: 495 DIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSARGQGEPLTG 550

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            L+L  G  +  ++   +D+       ++ A+  G       +D +  NR+GK  + L  
Sbjct: 551 KLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALITLPE 604

Query: 681 RDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVI 736
              ++        +D+LL  T+ G+ + FP+S +   +   G   + +     A+G+  +
Sbjct: 605 NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGL 664

Query: 737 SMAIVL 742
           +   VL
Sbjct: 665 AQLYVL 670


>gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
 gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
          Length = 758

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/750 (33%), Positives = 396/750 (52%), Gaps = 73/750 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GAERLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R+ I+  Y  GRGS+ +R
Sbjct: 187 HNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEIRKIYQNGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   +K  GD   +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AV--WKKEEGD---VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ LN  +P    L+ IL  ++ FR +
Sbjct: 302 VIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNN-RPAVKNLLEILSEWLVFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPKPV---LMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE Q  AILEL+L  L  L    IR E + L  E    
Sbjct: 411 -------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERAHL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+EL +  D     RR+  R  E    + + + +  E + + +S  
Sbjct: 452 EGLLASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHELMPSEPVTIVLSQS 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPAGLSYKAGDGYLGAARGKSNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G  +  ++   +D        ++ A+  G      
Sbjct: 560 DPVTLP--SARGQGEPLTGKLTPPPGAVVEQVL-MADDTQK-----LLMASDAGYGFVCT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA--- 717
            +D +  NR+GK  + L +   +++       +D+LL  T  G+ + FP+  +   +   
Sbjct: 612 FADLVSRNRAGKALLTLPANANVMAPLAIHSNDDLLLAITAAGRMLMFPVGDLPQLSKGK 671

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           G   V +     A G+  ++  ++L  ++D
Sbjct: 672 GNKIVSIPSAEAASGEDKLAWLLLLTPESD 701


>gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 260/783 (33%), Positives = 407/783 (51%), Gaps = 84/783 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 16  LTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 76  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSHY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 135 ADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y +G GSI +R +   E
Sbjct: 195 ANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIKMRAIYTQE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDESD +    ++ + R 
Sbjct: 255 K-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRS 309

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+  + V  NM+ L+G KP    L+ IL  ++ FR   V RR 
Sbjct: 310 NRVDIESLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLLAILTEWLEFRLTTVKRRL 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L+ R             
Sbjct: 369 QFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGLISR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q  AILE++L  L  L    +R EL+ L  E       L+S
Sbjct: 413 -------------FNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  ++K+E+   +DE    RR+ I+  E    +++ED +  E + V +S  G+V+  
Sbjct: 460 HSLLKELVKEEITKDRDEFGDLRRSPIITREDSQALKEEDILPNEPITVVLSKNGWVR-- 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                 A+     G+       ++F     +  T+  VLFF   G VY      LP  S 
Sbjct: 518 -----AAKGHDVDGKELSYKAGDEFKAQT-LARTNQQVLFFDGEGKVYSLPGHALP--SA 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + +G+ L   L+  +G     I+    ++       V+ AT  G     K+ D    NR+
Sbjct: 570 RGQGEPLTGKLNPAEGVLFEAIVGGEPEQK------VLLATDSGYGFIAKIEDLYVKNRN 623

Query: 672 GKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK  +KL     IL          + +   T +G+ + F +  +             +S 
Sbjct: 624 GKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL-----------PELSR 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMS--------AQRRLISGDTEEITSLKNDSSV 781
            KG+++IS+ +        +E I  M+ ++        A +R  +   E++T  K +   
Sbjct: 673 GKGNKLISIPVA--KAVSREEYIVDMQVLTTNDSLTVHAGKRHFTLKGEDLTHYKGERGR 730

Query: 782 EGN 784
            GN
Sbjct: 731 RGN 733


>gi|330953528|gb|EGH53788.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 285

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 220/283 (77%), Gaps = 2/283 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK 285


>gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium]
          Length = 765

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 245/685 (35%), Positives = 369/685 (53%), Gaps = 61/685 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +I  E+++ YL YA++ I+ R++PD+RDGLKPVHRRILF M  + ++    + K A
Sbjct: 9   IEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+ A YDA+ R+AQD++ R  L++GQGNFG+VDGD  AA RYTE RL
Sbjct: 69  RVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+DL + TVD  P YDGS +EPVVL AR+PN+L NG  GIAVGM+T IP HN 
Sbjct: 129 TPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPPHNA 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
           GEV+   + +I +PD  +  LM+ + GPDFPTG V++     ++  YATGRG + +R   
Sbjct: 189 GEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLRARW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E       ++VVTEIPY V K  ++E+IA+L+ +++   ++D+RDESD +  R+V+E 
Sbjct: 249 EQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK-VRIVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           + RG   + I+  L++ + L+   +VN+ V     +PE   L G+L+A++  R +V  RR
Sbjct: 308 RSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQVHTRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L + R+R H+L        N+D V+ II+   +P  A   LMQR            
Sbjct: 368 ATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPA---LMQR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                    G D        Q  A+L LRL  L  L    IR E+        E   +L+
Sbjct: 413 --------FGMDSE------QAEAVLNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550
             + +   ++ E+   + E    RRTR+      +D+  ED I +E +   +S  G++K 
Sbjct: 459 DPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDLRPEDLIQKEPLTAVLSRKGWIKA 518

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +            KG       +  ++ED +       +H +V F ++ G VY     RL
Sbjct: 519 L------------KGHDIDLEKIRFKEEDGLERAVKGYSHQTVTFLAASGKVYSLLGDRL 566

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P G  +  G+ L  +  L+ G+RI  ++   PE E      Y V  T+ G   R +  D 
Sbjct: 567 PSG--KRFGEPLTVLFELDPGDRILWMLAVDPEGE------YFV-TTRLGQGFRIRGRDL 617

Query: 666 IQINRSGKIAMKLDSRDEILSVETC 690
           +   R+GK  + L   D+ L V   
Sbjct: 618 VANQRTGKQVVSLREGDQPLHVHPV 642


>gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
 gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
          Length = 757

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 248/738 (33%), Positives = 390/738 (52%), Gaps = 81/738 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N KY K 
Sbjct: 8   GAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  +++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL +LG+ TVD+ PN+DG+  EP +L AR PNVL+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    +A++ NP   L+ L+E ++GPDFPT A +I  +  ++  Y TGRGS+ +R
Sbjct: 187 HNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +  +E       + V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 ALWTVEDG-----EAVISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  + V  NM+ L+G +P    L  IL  ++ +R +
Sbjct: 302 VIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDG-RPAVKNLHEILSEWLVYRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL +A  NLDEV+ IIR    P   ++ LMQR       
Sbjct: 361 TVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIRTKDEP---KQVLMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AILEL+L  L  L    +R E + L  E  + 
Sbjct: 411 -------------------FELSETQADAILELKLRHLAKLEEMKLRGEQDELEKERDKI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             IL+S  +L  ++K+E+ +        RR+ ++E      + + + +  E + V +S +
Sbjct: 452 QAILASERKLSNLLKKEIEADDAAYGDARRSPLIERGEAKALSENELMPSEPVTVILSTM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     SG+  R  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RSAKGHDIDPSGLGYRSGDNYLSSVRGKSNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S + +G+ L   L+L  G  +  ++      +  +   ++ A+  G      
Sbjct: 560 EPACLP--SARGQGEPLTGKLTLPPGAAVEQML------TGADERKLLMASDAGYGFVCS 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
            SD +  NR+GK  + L    +++         D LL  T+ G+ + FP+  +       
Sbjct: 612 FSDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLALTEAGRLLMFPVDDL------- 664

Query: 721 SVGVRGISLAKGDQVISM 738
                 +S  KG+++IS+
Sbjct: 665 ----PQLSKGKGNKIISI 678


>gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8]
 gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8]
          Length = 778

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 270/729 (37%), Positives = 377/729 (51%), Gaps = 77/729 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR
Sbjct: 25  AAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 84

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL 
Sbjct: 85  VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLT 144

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP HNL 
Sbjct: 145 PIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLR 204

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV   CVA+I +P +    L  +I GPDF  G  +I     I   YA GRGS+ +R    
Sbjct: 205 EVAQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQ 264

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD 298
            E+ +  + Q+VVTE+P   +   +LE+I E+   K                  ++++ D
Sbjct: 265 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLD 324

Query: 299 -LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
            +RDES +    R+V E K      D  +N L   TS++S  S+N+V +    +P +  L
Sbjct: 325 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGL 384

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++AFR   VVRRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P  A 
Sbjct: 385 RDILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAA- 443

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSE Q   ILE+RL +L  L    I 
Sbjct: 444 --LMER--------------------------FKLSERQAEDILEMRLRQLARLEGFKIE 475

Query: 475 NELNSL---GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            EL       + ++E LD  +S  RLL  IK+     K   D  RRT ++E       E 
Sbjct: 476 QELADKREDQVRLQELLDNPASLKRLL--IKEIEADAKQYGDD-RRT-LIETAERAVLET 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            ++ E + V VS  G++        RA++  G   S    +  D +   F   T  +++ 
Sbjct: 532 KVLDEPVTVIVSQKGWL--------RARQGHGHDASQFGFKQGDDLYGAFECRTTDTLIA 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVF 650
               G VY   V  LP  S +  G+ +  ++ L  G RI  TI   P  +S W     + 
Sbjct: 584 VGDNGRVYSVPVGGLP--SARGDGQPVTTMIDLGSGTRIVHTIAAAP--DSRW-----LL 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709
           AT+ G     KLSD +   R+GK  + L+  DE+L  V        + L +  G+ + F 
Sbjct: 635 ATRGGYGFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFAGAKQLALLSHKGKFLVFG 694

Query: 710 ISAIRVFAG 718
           +  ++  +G
Sbjct: 695 LDEVKTLSG 703


>gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
 gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
          Length = 761

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 398/731 (54%), Gaps = 63/731 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           V+  K      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++      +     G   +SG     + ++      S   +V F  S G  Y  +   
Sbjct: 513 GWIRHA--KGHDVDAEGLNYKSG-----DKYLAHARGKSNQPAV-FLGSDGRSYSLESHS 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     K +D 
Sbjct: 565 LP--SARSQGEPITGRLNITAGSSIRQVI-MSEEEQLW-----LVGSDAGYGFVCKGADL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L +  EI++ +       ++IL  T  G+ + FPI  +   A      
Sbjct: 617 LSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNK 676

Query: 724 VRGISLAKGDQ 734
           +  I  AK  +
Sbjct: 677 IINIPAAKAKE 687


>gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
 gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
          Length = 747

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/741 (33%), Positives = 392/741 (52%), Gaps = 82/741 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+    V ++DNP   L  ++++++GPD+PT A +I  R+ I   Y  GRGSI +
Sbjct: 187 PHNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E+ +     IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +   R
Sbjct: 247 RAVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFRE 366
           +V+E +      D +++ L+  T L+  +  ++NM+ L+  KP    L+ IL  ++AFR 
Sbjct: 302 IVLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDS-KPAVKNLLTILTEWLAFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  + L+K   R H+L GL IA  NLDEV+ IIR   NP   + EL+ R      
Sbjct: 361 TTVTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNP---KAELIAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AIL LRL  L  L   +++ E   L  E + 
Sbjct: 412 --------------------FQLSDEQAEAILNLRLRHLAKLEEHELKAEQQKLEEEREH 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    E + V +S 
Sbjct: 452 LQGILGSERRLNNLIKKEIEADAKAFASPRRSPLVERAEAKAISESDLTPTEPVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYK 600
            G+V            R  KG    V        D ++      ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQNLSYKAGDSYLAHAYGKSNQPVVFIDSTGRSYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +   +SL  G  +  ++   E         V+ A+  G     
Sbjct: 560 LDPLSLP--SARSQGEPITGKISLPDGATVQCVLMAEESRK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           +  D +  N++GK  + L    ++L  +     +EN ++  +  G+ + FP+S +     
Sbjct: 612 QFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVSEL----- 666

Query: 719 RNSVGVRGISLAKGDQVISMA 739
                   +S  KG+++I+++
Sbjct: 667 ------PELSKGKGNKIINIS 681


>gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 790

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 261/754 (34%), Positives = 388/754 (51%), Gaps = 86/754 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I +  + +YL YA++V+ GRA+P++ DG KPV RRIL+ M QMG+    K+VK AR+ 
Sbjct: 43  VKIAEYAERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKSARVV 102

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+++ Y+A+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL   
Sbjct: 103 GDVLGKYHPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEARLTPI 162

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L   TVDF PNYDG+FQEP +L AR P VL+NG  GIAVGMAT IP+HNL EV
Sbjct: 163 ADLLLSELDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLKEV 222

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+  NP++  D L+  I GPDFP G  I+     I++AYA+GRGS+ +R    IE
Sbjct: 223 AKAAVALAKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRARWSIE 282

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+VV+E P+ V+   +LE+I EL   K                  I+ + D +
Sbjct: 283 QLARGQWQVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSVLDAV 342

Query: 300 RDESDR-QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLI 355
            DESD+ Q  R+V + K    S D ++  L  +TSLQ+  SVN  M+ L+G +P++  L 
Sbjct: 343 ADESDKSQKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDG-RPQQKALT 401

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V FR   V RR  Y L +  DR H+L G  I   N+DEV+++IR S  P+    
Sbjct: 402 QVLREWVEFRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAPK---- 457

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       +DL+   D             LSE Q   ILE+RL +L  L    I  
Sbjct: 458 ------------EDLMKKFD-------------LSERQAEDILEIRLRQLARLEGIKIER 492

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E+  L  E KE   +L S   L  ++  E+ +   +    RRT              ++ 
Sbjct: 493 EIKELKAEAKELKRVLGSEEALRELVVGEIEADAKQYGDERRT--------------LIE 538

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQR-----RGGKG--RSGVVMRDEDFVTDLFIVSTHTS 588
           E  +  V+    V   P++V+ +QR     R G G   S +  +D D +   +   T   
Sbjct: 539 EAQITKVT--AQVSDEPVTVFISQRFWVRTRLGHGIDASAIAFKDGDSIAATYECRTTDQ 596

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            +   S G V    V  LP G  +  G  L   + L  G +I                 V
Sbjct: 597 CIVICSNGRVCSIPVSALPTG--RGDGAPLATFIELAPGAKIAHAF------CGKTETPV 648

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVR 707
           + +T  G      + D +  N++GK  + +     +  V    TQ + +   +K  + + 
Sbjct: 649 LISTSAGYGFPCFIGDMVGRNKAGKQFISVKEETILPPVLLAPTQHSLVAALSKNARLLV 708

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           F +S +++  G    G+  I L +GD++ +  ++
Sbjct: 709 FVLSELKLLQG-GGKGMMLIDLKEGDELTACTVI 741


>gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
 gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
          Length = 751

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 316/559 (56%), Gaps = 39/559 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+ G  P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P    + +M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEP----KPVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W         DL D+                Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARW---------DLTDN----------------QVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVK 549
             I +E + V +S  G+++
Sbjct: 512 AMIEKEPITVVISEKGWIR 530


>gi|77169372|gb|ABA63623.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA++V++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADIVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
 gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
          Length = 735

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/631 (36%), Positives = 353/631 (55%), Gaps = 53/631 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KCA
Sbjct: 8   IEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKCA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+A++Y+AL R+AQD++ R  L+EGQGNFGSVDGD PAA RYTE RL
Sbjct: 68  RVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD +  D VDFRP YDG  QEPVVL + +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 128 TEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHNA 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
            EV      ++  P      L+E++ GPDFPTG +I+  +  I  AY TGRGS  +R   
Sbjct: 188 AEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRARW 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+       IVVT+IPYQV K+ ++E+IA+L+ +K++  + D+RDES  +  R+++E 
Sbjct: 248 EVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDE-IRLILEP 306

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K RG   +V++  L+R T L+S F +NM  L   + P    L  +++A++  R EV+ RR
Sbjct: 307 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHEVLERR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR                           
Sbjct: 367 SRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREE------------------------- 401

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             DD+  ++ +  T  L+++Q  ++L +RL  L  L   +IR E ++L  E    + +L 
Sbjct: 402 --DDAKASLIA--TFKLTDLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEQAALMALLD 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +    I++EL ++       R           E    I+     V +S +  V+R P
Sbjct: 458 SEKQRWKTIERELTTMIKAFGKGRLG---------ERRSTILSAPKPVDISVVEEVEREP 508

Query: 553 LSVYRAQR---RGGKGRSGVVMRDEDFVT-DLFIVS----THTSVLFFSSLGFVYKEKVW 604
           L++  +Q+   R  KG + V + ++ F   D F ++    T   + FF++ G  Y  K  
Sbjct: 509 LTMILSQKGWVRAVKGHN-VDLENQKFKEGDAFKLAIPCQTSDRLCFFATDGRAYTVKGA 567

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP 635
            LP G  +  G+ +  ++ L+  E +  + P
Sbjct: 568 DLPRG--RGDGQPIRLLIDLSNDEDLLAVFP 596


>gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b]
          Length = 751

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 260/783 (33%), Positives = 406/783 (51%), Gaps = 84/783 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 16  LTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 76  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSLY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 135 ADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y +G GSI +R +   E
Sbjct: 195 ANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYESGNGSIKMRAIYTQE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDESD +    ++ + R 
Sbjct: 255 K-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRS 309

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+  + V  NM+ L+G KP    L+ IL  ++ FR   V RR 
Sbjct: 310 NRVDIESLMSHLFATTDLERSYRVNFNMIGLDG-KPRVKGLLAILTEWLEFRLATVKRRL 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L+ R             
Sbjct: 369 QFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGLISR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q  AILE++L  L  L    +R EL+ L  E       L+S
Sbjct: 413 -------------FNLTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+E+   +DE   PRR+ I+  E    +++ED +  E + V +S  G+V+  
Sbjct: 460 HFLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEPITVVLSKNGWVR-- 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                 A+     G+       ++F     +  T+  VLFF   G VY      LP  S 
Sbjct: 518 -----AAKGHDVDGKELSYKAGDEFKAQT-LARTNQQVLFFDGEGKVYSLPGHVLP--SA 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + +G+ L   L+  +G     I+    ++       V+ AT  G     K+ D    NR+
Sbjct: 570 RGQGEPLTGKLNPAEGVLFEAIVGGEPEQK------VLLATDSGYGFIAKIEDLYVKNRN 623

Query: 672 GKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK  +KL     IL          + +   T +G+ + F +  +             +S 
Sbjct: 624 GKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL-----------PELSR 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMS--------AQRRLISGDTEEITSLKNDSSV 781
            KG+++IS+          +E I  M+ ++        A +R  +   E++T  K +   
Sbjct: 673 GKGNKLISIPAA--KAVSREEYIVDMQVLTTNDSLTVYAGKRHFTLKGEDLTHYKGERGR 730

Query: 782 EGN 784
            GN
Sbjct: 731 RGN 733


>gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512]
          Length = 751

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 316/559 (56%), Gaps = 39/559 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+ G  P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P    + +M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEP----KPVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W         DL D+                Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARW---------DLTDN----------------QVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVK 549
             I +E + V +S  G+++
Sbjct: 512 AMIEKEPITVVISEKGWIR 530


>gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
 gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
          Length = 754

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 254/743 (34%), Positives = 405/743 (54%), Gaps = 76/743 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TG+GS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V H+E   GD   I+VT +P+QV+ A +LE+IA L++ K  ++  +ADLRDESD +   
Sbjct: 250 AVYHVE--DGD---IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
             V+I        +V++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++AFR
Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDG-KPQLKNLRNLLVEWLAFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR ++ L+K   R H+L GL IA  NLDEV+ IIR + +P+    EL+ R     
Sbjct: 364 VQTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKA---ELIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q   IL+ RL +L  L    +R+E ++L  E  
Sbjct: 416 ---------------------FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   +L S ++L  +++ EL+   +     RR+ IV+      + + + +  E + V +S
Sbjct: 455 KLQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTETELLPNEKITVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG     +G+  +  D         ++   +F  S G  Y
Sbjct: 515 EKGWV------------RSAKGHDIDATGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSY 562

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G     ++  P+D+S    LYV+ A+  G    
Sbjct: 563 SVPAHTLP--SARGQGEPLTGRLTPPPGANFECVL-LPDDDS----LYVI-ASDAGYGFV 614

Query: 660 NKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
            K  D    N++GK  + L +  + IL      +E++ L + T  G+ + F IS +    
Sbjct: 615 VKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTTEGRLLVFKISDLPQLG 674

Query: 718 ---GRNSVGVRGISLAKGDQVIS 737
              G   +G+ G  +A  ++ ++
Sbjct: 675 KGKGNKIIGIPGERVASREEYVT 697


>gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
 gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
          Length = 758

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 241/686 (35%), Positives = 361/686 (52%), Gaps = 63/686 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 15  IQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE ++
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTEAKM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 135 TEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 196 GEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
            E+ D  + +I +PD  ++ L+          I GPDFPTG VI+  R  +  +Y TGRG
Sbjct: 195 HELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIVESRASMAESYRTGRG 254

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES   
Sbjct: 255 GFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V++   R   A++++  L++ T L+S   +NM  L+ G  P    L  +L  ++A R
Sbjct: 315 VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWLAHR 374

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P+     +++R     
Sbjct: 375 REVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAV---MIER----- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++VQ  AIL +RL  L  L   +IR E +SL  E  
Sbjct: 427 ---------------------FGLTDVQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKA 465

Query: 486 ECLDILSSRSRLLGIIKQELLSVKD------ELDTPRRTRIVEGLLDME--DEDCIVRED 537
           E   +L+S  +    +  E+  VK       EL   R T       D+E   +  I +E 
Sbjct: 466 EIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPDADVEAIQQAMIEKEP 525

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +      S +  +D D +   F   T   +L F++ G 
Sbjct: 526 ITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFPAQTTDKILIFTTGGK 577

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y     +LP G  +  G+ L  ++ +   + + T   F  D +      ++ ++  GN 
Sbjct: 578 AYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTA--FVHDPAR----KLIVSSTAGNG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDE 683
                SD +   R GK  M +   DE
Sbjct: 630 FVVTESDIVANTRKGKQVMNVTMPDE 655


>gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
 gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
          Length = 744

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 349/627 (55%), Gaps = 48/627 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +   +   YL YA++ I+ R++PD+RDGLKPVHRR++F M Q+ ++    + KCA
Sbjct: 9   VQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAMRQLRLDPGSGFKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGK+HPHG+ +IY+AL R+AQD++ R  LIEGQGNFG++DGD  AA RYTE RL
Sbjct: 69  RVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNIDGDNAAAMRYTESRL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D VDFRP YD    EPVVL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 129 TEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAAGIAVGMATSIPPHNA 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            E+    + +I +P+ D  AL++ ++GPDFPTG  ++  R  + +AY TGRGS+ +R   
Sbjct: 189 AELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLSAYETGRGSLRVRARW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                 G   QIVVTEIPYQV K+ ++E++A+L+ E+++  + D+RDES  +  R+V+E 
Sbjct: 249 SRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDIRDESTER-VRIVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K R    D+++  L+R T+ +  FS+NM  L+  + P    L  +L+A++  R EV+ RR
Sbjct: 308 KSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLREMLRAWLDHRHEVLERR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR    P+ A                LI 
Sbjct: 368 SRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPA----------------LI- 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
               +++T        L++ Q  AIL +RL  L  L   +IR E  +L  E K    +L+
Sbjct: 411 ----AAFT--------LTDTQAEAILNMRLRSLRKLEEMEIRKEHKALTAERKALDAMLA 458

Query: 493 SRSRLLGIIKQELLSVKDEL---DTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGY 547
             ++    I+ E+ +           RRT I     + ++  E  + RE + V +S  G+
Sbjct: 459 DPAKRWARIETEIEATAKTFGGGPGARRTTISGAVPVTEVAVEALVEREPLTVILSEKGW 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +        RA +      + +  ++ D +  L   S+   V  F++ G VY  +   LP
Sbjct: 519 I--------RALKGHAVAEAELKFKEGDRLKALLRCSSLDRVTVFATNGRVYSLRAADLP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIM 634
            G  +  G+A+  ++ L   + +  + 
Sbjct: 571 RG--RGDGQAIRLMVDLGNEDEVAALF 595


>gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6]
 gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
 gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6]
 gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
          Length = 761

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/746 (33%), Positives = 398/746 (53%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP   L  LM+ ++GPDFPT A +I   + ++  Y +GRGS+ +R
Sbjct: 188 HNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGRGSVKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR E
Sbjct: 303 VIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDN-RPQVKGLVQILTEWITFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  ++    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNTLLKKEIRADAEKFGDDRRSPLVVREEAKALTERDLMPNEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++      +    +G   ++G     + ++      S   +VL  S  G  Y  +   
Sbjct: 513 GWIRHA--KGHEVDCQGLSYKAG-----DSYLAHACGKSNQQAVLLGSD-GRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++  G  I  ++   E+E  W     +  +  G     K SD 
Sbjct: 565 LP--SARGQGEPITGRLNITPGSSIRQVI-MGEEEQLW-----LIGSDAGYGFVCKGSDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++         +DIL  T  G+ + FPI  +          
Sbjct: 617 LSKNRSGKALVSLPENAEVMTPSAVLDLDNDDILAITNQGRMLMFPIKDLPQLGKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++++S  I L   A
Sbjct: 677 IINIPAAKAKAKEEILSHLIALPKGA 702


>gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42]
 gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42]
          Length = 751

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/559 (38%), Positives = 315/559 (56%), Gaps = 39/559 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QI++TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+ G  P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P    + +M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEP----KPVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W         DL D+                Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARW---------DLTDN----------------QVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---DE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  E     E    +
Sbjct: 452 ELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAEAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVK 549
             I +E + V +S  G+++
Sbjct: 512 AMIEKEPITVVISEKGWIR 530


>gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
 gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
          Length = 758

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 241/686 (35%), Positives = 361/686 (52%), Gaps = 63/686 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 15  IQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE ++
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTEAKM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 135 TEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 196 GEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
            E+ D  + +I +PD  ++ L+          I GPDFPTG VI+  R  +  +Y TGRG
Sbjct: 195 HELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRTGRG 254

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES   
Sbjct: 255 GFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V++   R   A++++  L++ T L+S   +NM  L+ G  P    L  +L  ++A R
Sbjct: 315 VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWLAHR 374

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P+     +++R     
Sbjct: 375 REVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAV---MIER----- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++VQ  AIL +RL  L  L   +IR E +SL  E  
Sbjct: 427 ---------------------FGLTDVQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKA 465

Query: 486 ECLDILSSRSRLLGIIKQELLSVKD------ELDTPRRTRIVEGLLDME--DEDCIVRED 537
           E   +L+S  +    +  E+  VK       EL   R T       D+E   +  I +E 
Sbjct: 466 EIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPDADVEAIQQAMIEKEP 525

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +      S +  +D D +   F   T   +L F++ G 
Sbjct: 526 ITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFPAQTTDKILIFTTGGK 577

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y     +LP G  +  G+ L  ++ +   + + T   F  D +      ++ ++  GN 
Sbjct: 578 AYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTA--FVHDPAR----KLIVSSTAGNG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDE 683
                SD +   R GK  M +   DE
Sbjct: 630 FVVTESDIVANTRKGKQVMNVTMPDE 655


>gi|77168992|gb|ABA63433.1| gyrase subunit A [Clostridium perfringens]
 gi|77169082|gb|ABA63478.1| gyrase subunit A [Clostridium perfringens]
 gi|77169100|gb|ABA63487.1| gyrase subunit A [Clostridium perfringens]
 gi|77169180|gb|ABA63527.1| gyrase subunit A [Clostridium perfringens]
 gi|77169184|gb|ABA63529.1| gyrase subunit A [Clostridium perfringens]
 gi|77169186|gb|ABA63530.1| gyrase subunit A [Clostridium perfringens]
 gi|77169190|gb|ABA63532.1| gyrase subunit A [Clostridium perfringens]
 gi|77169212|gb|ABA63543.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 239/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+D+V+
Sbjct: 300 DNIDDVI 306


>gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
 gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
          Length = 752

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 259/768 (33%), Positives = 405/768 (52%), Gaps = 87/768 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT A +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R      D +++ L+  T L+  F V  NM+ L+  +P+   L+ ILK 
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILKE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P      LM R
Sbjct: 355 WIEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPV---LMNR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +SE+Q  AIL+++L  L  L    IR E   L
Sbjct: 412 --------------------------FNISEIQANAILDIKLRNLAKLEEFKIRAEQEEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E      + + D +  E +
Sbjct: 446 EAEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPI 505

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST----HTSVLFFSS 594
            V +S  G+++      +     G   +SG          D F+ ST    +   +F  S
Sbjct: 506 TVVLSEKGWIRHA--KGHEVDAEGLNYKSG----------DKFLASTKGKSNQQAVFLGS 553

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y  +   LP  S +++G+ +   L+++ G  I  ++   E+E  W     +  +  
Sbjct: 554 DGRSYSLESHSLP--SARSQGEPITGRLNVSPGTSIRQVV-MGENEQLW-----LVGSDA 605

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISA 712
           G     K SD +  N+SGK  + L    E++          N IL  T  G+ + FPI  
Sbjct: 606 GYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKD 665

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           +             +S  KG+++I++       A   ER  ++ H+ A
Sbjct: 666 L-----------PQLSKGKGNKIINI-----PSAKAKEREEFVSHLMA 697


>gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 751

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 314/559 (56%), Gaps = 39/559 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+ G  P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P    + +M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEP----KPVM 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+ +DI                         Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWDLTDI-------------------------QVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVK 549
             I +E + V +S  G+++
Sbjct: 512 AMIEKEPITVVISEKGWIR 530


>gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 753

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 258/742 (34%), Positives = 381/742 (51%), Gaps = 75/742 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  
Sbjct: 17  LPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSATAKYKKSARTV 76

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL 
Sbjct: 77  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTESRLS 135

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  LL +LG+ TVD+ PN+DG+  EP VL AR PNVL+NGG GIAVGMAT+IP HNL 
Sbjct: 136 RYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNGGSGIAVGMATDIPPHNLR 195

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSH 255
           EV   CV ++++P   L  L E +  PDFPT A I+     ++  Y TG+GS  IR  + 
Sbjct: 196 EVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAELRKVYETGQGS--IRARAR 253

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+   D   IVVT +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++   
Sbjct: 254 YEREGDD---IVVTALPHQVSGAKLLEQIASQIRAKKLPMVEDLRDESDHEHPTRLVITP 310

Query: 316 RGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVR 371
           R    DV  ++  L+  T L+  + VNM  + L+G +P+   L G+L  ++ FR E V R
Sbjct: 311 RSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDG-RPQVRDLAGLLGEWLEFRIETVRR 369

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L K + R HVL GL IA  N+DEV+ IIR    P+    ELM R           
Sbjct: 370 RLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQPKP---ELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q  AILEL+L  L  L    IR E + L  E  +    L
Sbjct: 416 ---------------FGLSDIQAEAILELKLRHLAKLEEMKIRGEQDELATERDQLEKTL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIV-REDMVVTVSHLGYVK 549
            S  RL   +++E+     +    RR+ +V+       DE  +V  E + V +S  G+  
Sbjct: 461 GSERRLRTQVRREIEKDAADYGDERRSPLVQRAAAQALDESALVPTEPLTVVLSEKGWA- 519

Query: 550 RVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                      R  KG      G+  +  D         ++  V F  S G  Y      
Sbjct: 520 -----------RAAKGHDVDARGLNYKAGDAFQAAVTGRSNQPVAFIDSTGRTYTIAAHT 568

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   ++  +G R    M    +E  W     +  T HG     KL D 
Sbjct: 569 LP--SARGQGEPLSGRVNPPEGARFVG-MATGAEEDRW-----LLGTDHGYGFVAKLGDL 620

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA---GRN 720
           +   ++GK  + + +   +L         E+ I + T  G  + FP + +   A   G  
Sbjct: 621 LGRQKAGKNVLTVPAGAAVLQPAPVRNPHEDHIAVVTTRGYLLLFPATELPELARGKGNK 680

Query: 721 SVGVRGISLAKG-DQVISMAIV 741
            +G+   +L  G ++V+ +A++
Sbjct: 681 LIGIPSAALKDGSERVLDVAVL 702


>gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
 gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
          Length = 758

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 250/759 (32%), Positives = 404/759 (53%), Gaps = 87/759 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +ID+P  +L  +M  ++GPD+PT A +I  +  ++  Y TGRGS+ +R
Sbjct: 188 HNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTGRGSVKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  F V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++E+Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  R+  ++K+E+ +  D+    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EKLLGSERRMNTLLKKEIQADADKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG      G+  +  D         ++   +F  + G  Y  
Sbjct: 513 GWI------------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQQAVFLGNDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   +P  S +++G+ +   L++N G  I  ++   E+E  W     +  +  G     K
Sbjct: 561 ESHSMP--SARSQGEPITGRLNINAGTSIRHVV-MGEEEQLW-----LIGSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGR 719
            SD +  N+SGK  + L +  E++S +T +    ++IL  T  G+ + FPI  +      
Sbjct: 613 GSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEILTITNQGRMLLFPIKDLPQLGK- 671

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
                      KG+++I++       A   ER  Y+ H+
Sbjct: 672 ----------GKGNKIINIPA-----AKAKEREEYVSHL 695


>gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 736

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 244/730 (33%), Positives = 386/730 (52%), Gaps = 74/730 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+
Sbjct: 8   EDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKF 67

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL
Sbjct: 68  HPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLL 126

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V
Sbjct: 127 GELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASV 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +R V   +K  G 
Sbjct: 187 MLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAV--WKKEDG- 243

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD- 321
             +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +    ++ + R    D 
Sbjct: 244 --EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVPRSNRIDF 301

Query: 322 -VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +++ L+  T L+  + V  NM+ L+G KP    L  IL  ++ FR   V RR  Y L+
Sbjct: 302 EALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTEWLVFRRTTVTRRLNYRLD 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R                  
Sbjct: 361 KILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------------------ 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q  AIL LRL  L  L   +++ E + L  E  E    L S  RL 
Sbjct: 400 --------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLN 451

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +      +PR + +VE      + + D    ED+ V +S  G+V        
Sbjct: 452 TLIKKEIQADAKAFASPRHSPLVERAEAKAISESDLTPTEDVTVILSEKGWV-------- 503

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  R  D         ++  V+F  S G  Y      LP  S +
Sbjct: 504 ----RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLP--SAR 557

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++G+ L   ++L  G  +  ++    D        V+ A+  G        D +  N++G
Sbjct: 558 SQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFICSFEDLVSRNKAG 611

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA---GRNSVGVRGI 727
           K  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +   G   + +   
Sbjct: 612 KAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGKGNKIINISAQ 671

Query: 728 SLAKGDQVIS 737
           +  +G+++++
Sbjct: 672 AAKEGNELLA 681


>gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147]
          Length = 776

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 263/756 (34%), Positives = 393/756 (51%), Gaps = 77/756 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+++    +++YL+YA++V+ GRA+PD+ DG KPV RRILF M +MG+  N K VK AR+
Sbjct: 19  SLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD++G+ TVDF PNYDGSF EP +L  R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 IAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDA 318

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDES +    R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L 
Sbjct: 319 VRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLA 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 379 AILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI             G   L+E Q   ILE+RL +L  L +  I  
Sbjct: 437 --------------LI-------------GAFGLTERQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQFGDERRT-LIQQEKRATFETKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGST 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G
Sbjct: 581 GRVYSVSVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPI 710
                K+ D +   ++GK  M +D+        +  +      + +   +  G+ + F I
Sbjct: 633 FGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPVLPAASRVACLSSGGRLLVFGI 692

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             ++   G    G RG+ L   D   ++   L  DA
Sbjct: 693 DEMKTLGG----GGRGVILMALDPKETLVQALAIDA 724


>gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1]
 gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1]
          Length = 765

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/674 (35%), Positives = 371/674 (55%), Gaps = 69/674 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR 
Sbjct: 12  TLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKATAKYKKSART 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL
Sbjct: 72  VGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL ++ + TVD+ PN+DG+ QEP VL +R PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 131 SKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIAVGMATDIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            E+   C+ +++NP+ +LD L+  ++GPDFPTG  +I  ++ I   Y TG+G I  R   
Sbjct: 191 REIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYETGKGQIKARARF 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313
            IE+      +IVV E+P+QV+ + +LE+IA  ++ K++  + DLRDESD +   R+VI 
Sbjct: 251 TIEEG-----EIVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDESDHENPTRLVIV 305

Query: 314 LKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVV 370
            K      D ++  L+  T L+  + VNM  + L+G  P+   L   L  ++ FR +VV 
Sbjct: 306 PKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGL-PQVKPLKNFLSEWLRFRIDVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L+K  +R H+L GL IA  N+DEV+ IIR    P+    ELM R          
Sbjct: 365 RRLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKPKV---ELMAR---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q  +ILEL+L  L  L    I+ E + L  E K+   +
Sbjct: 412 ----------------FGLSDMQAESILELKLRHLAKLEEMRIKGEQDELEKERKQLEGL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LSS  +L  +I +E+    D+    RRT IV  +      +ED +  + + V +S  G++
Sbjct: 456 LSSDRKLKKLITEEIQEAIDDFGDDRRTPIVARKEAQAFSEEDLLSNDPITVVISKQGWI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST----HTSVLFFSSLGFVYKEKVW 604
                       R  KG    V        D F+VST    + +++  +S G  Y  K  
Sbjct: 516 ------------RAAKGHDIDVNGLSYKSGDEFLVSTKGRSNQTLVLLASNGRTYSIKAH 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ +   +SL +   I + +    +E+ +     + A+  G     +L D
Sbjct: 564 TLP--SARGQGEPITGRISLEKDATIVSAV-LDNEEAHY-----LIASDAGYGFVAQLKD 615

Query: 665 FIQINRSGKIAMKL 678
               N++GK  + L
Sbjct: 616 LYAKNKAGKATLSL 629


>gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786]
          Length = 776

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 263/756 (34%), Positives = 393/756 (51%), Gaps = 77/756 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+++    +++YL+YA++V+ GRA+PD+ DG KPV RRILF M +MG+  N K VK AR+
Sbjct: 19  SLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD++G+ TVDF PNYDGSF EP +L  R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 IAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDA 318

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDES +    R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L 
Sbjct: 319 VRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLA 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 379 AILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI             G   L+E Q   ILE+RL +L  L +  I  
Sbjct: 437 --------------LI-------------GAFGLTERQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQFGDERRT-LIQQEKRATFETKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGST 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G
Sbjct: 581 GRVYSVSVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPI 710
                K+ D +   ++GK  M +D+        +  +      + +   +  G+ + F I
Sbjct: 633 FGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPVLPAASRVACLSSGGRLLVFGI 692

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             ++   G    G RG+ L   D   ++   L  DA
Sbjct: 693 DEMKTLGG----GGRGVILMALDPKETLVQALAIDA 724


>gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
 gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
          Length = 757

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 249/740 (33%), Positives = 394/740 (53%), Gaps = 63/740 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  CV ++DNP  DL+ LME + GPD+PT A +I  R  I   Y+TG+GSI  R
Sbjct: 190 HNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADIAKIYSTGKGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E  SG   +IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYAVE--SG---EIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           I + R      D ++  L+  T LQ  F VN+  + LNG KP+   L  IL  ++ FR  
Sbjct: 305 IVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNG-KPQVKGLKQILTEWLEFRLT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L  L +A  N+DEV+ IIR+  NP+T   ELM R       
Sbjct: 364 TVTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENPKT---ELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE+Q  AIL+L+L  L  L    I +E + L +E  + 
Sbjct: 414 -------------------FQISEIQADAILDLKLRHLAKLEEVKITSEQDELEVERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  RL  +IK+EL+   +     RR+ +VE      + +++    E + V +S  
Sbjct: 455 ELLLSSDRRLKTLIKKELIHDGETYGDDRRSPLVERSESKALTEQELAPVEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+     G +      + F+      S   +V F  S G  +      
Sbjct: 515 GWVR-------CAKGHDIDGHALSYKSGDGFLCSAVGRSNQPAV-FIGSTGRSFATDTHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +    +L+ GE +  ++   +DE      + + A+  G        D 
Sbjct: 567 LP--SARSQGEPITTRFNLSPGEVMEHLL-LGDDEK-----FYLLASDAGYGFVGSYKDM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK  + L +  +++  +   +     IL  T  G+ + F + ++   +      
Sbjct: 619 VSRNKAGKALLSLPANAKVIKPQLVDKSKVESILAITNEGRMLLFSMESLPQLSKGKGNK 678

Query: 724 VRGISLAKGDQVISMAIVLH 743
           + GI   +      + I LH
Sbjct: 679 IIGIPTERAKNREELLIHLH 698


>gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48]
 gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48]
          Length = 751

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 256/742 (34%), Positives = 398/742 (53%), Gaps = 74/742 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 9   EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P
Sbjct: 128 EARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   L+ L E I+GPD+PT A ++  R  I   Y TG+GSI +
Sbjct: 188 PHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYETGKGSIRM 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 248 RAVYRVE--DGD---IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCR 302

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   ++  L+  T L+S +  +VN++ L+G +P+  +L  +L  ++ FR 
Sbjct: 303 IVIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDG-RPQLKSLRALLLEWLEFRI 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A             
Sbjct: 362 GTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQA------------- 408

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              LI   D             L+E+Q   ILE RL +L  L    IR E + L  E K 
Sbjct: 409 ---LIARFD-------------LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQKR 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  +++ ELL   +     RR+ IVE      + + + +  E + V +S 
Sbjct: 453 LTTLLGSDAKLRKLVRSELLEDAETYGDDRRSPIVERAEAKALSENELMPTEPVTVVLSE 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +   S G  Y 
Sbjct: 513 KGWV------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYS 560

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     ++  PEDE+    LYVV A+  G     
Sbjct: 561 LAAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPEDEA----LYVV-ASDAGYGFVV 612

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLT-TKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +  ++++     ++E D L   T  G+ + F ++ +     
Sbjct: 613 KGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASREQDWLAAVTTEGRLLVFKVADLPQLGK 672

Query: 718 --GRNSVGVRGISLAKGDQVIS 737
             G   +GV G  +A  ++ ++
Sbjct: 673 GKGNKIIGVPGDRVASREEFVT 694


>gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
 gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
          Length = 750

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 338/605 (55%), Gaps = 46/605 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI        +   YL YA++ I  R++PD+RDGLKPVHRR+L+ M  + ++    Y KC
Sbjct: 12  GILDAPFDSALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLKLDPAAGYKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  AA RYTE R
Sbjct: 72  ARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  L+D L +D V +RP Y+G  QEP +    +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTQVAIDLMDGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGASGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGV 253
             E++D  + V+D+PD D DA++  ++GPDFPTG +++    I + +Y TGRG   +R  
Sbjct: 192 AAELLDAAIHVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILRESYTTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+  G   QIVV+EIPY V K  ++E+IA L+ +K++  +AD+RDESD Q  R+V+E
Sbjct: 252 WEIEREKGGGWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILADVRDESDAQ-VRIVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVR 371
            + R     V+++ L+R++ L++  S+N+  L+  + P   +L   L A+V  +  V+ R
Sbjct: 311 PRSRTVDPQVLMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREALAAWVEHQFVVLRR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L K  DR  +L G  +A  NLD V+ IIR    P+    E  +            
Sbjct: 371 RSEHRLGKIADRIELLDGYLVAYLNLDRVIEIIRTEDEPKAVMIEEFR------------ 418

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q  AIL +RL  L  L   +IR E + L  E ++   +L
Sbjct: 419 -----------------LTDRQAEAILNMRLRSLRRLEEFEIRGERDKLDKEREQLTQLL 461

Query: 492 SSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
            S  R    +K++L  ++D   L+T    RRT I E     D+  E  I RE + V +S 
Sbjct: 462 GSEQRQRTRMKKDLGKIRDRYGLETILGARRTLIEEAAPTRDIPLEAMIEREPITVILSQ 521

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+++ +   V  A     K + G      D     F   T   +L  ++ G  +     
Sbjct: 522 RGWIRAMKGHVDLASAETAKFKEG------DGPAFAFHAQTTDKLLLAAANGRFFTLAAD 575

Query: 605 RLPIG 609
           +LP G
Sbjct: 576 KLPGG 580


>gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60]
          Length = 758

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 249/733 (33%), Positives = 384/733 (52%), Gaps = 71/733 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  EDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSRYAEILL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN  EV    V
Sbjct: 138 SELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A++DNP   LD L+  I+GPDFPT A +I  R  I+  Y TGRGS+ +R V   E++   
Sbjct: 198 ALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEES--- 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV++ +P+Q + A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 255 --EIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHENPTRLVIVPRSNRVDL 312

Query: 323 --ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++N L+  T L+  + +NM  +    +P    L  IL  ++++R E V RR  Y L K
Sbjct: 313 DQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEK 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL  A  N+DEV+ IIR    P+     L+ R                   
Sbjct: 373 VLKRLHILEGLLCAFLNIDEVIHIIRSEDEPKPV---LVAR------------------- 410

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LS+ Q  AILEL+L  L  L    IR E ++L  E      +L+S  +L  
Sbjct: 411 -------FGLSDTQAEAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGT 463

Query: 500 IIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +IK+E+++  +     RR+ + E      M + D +  E + + +S  G+V         
Sbjct: 464 LIKKEIMADAETYGDARRSPLQERSEARAMSEHDFVPSEPVTIVLSEGGWV--------- 514

Query: 558 AQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S + 
Sbjct: 515 ---RSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLP--SARG 569

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L   L+   G  I  ++       + +N  ++ A+  G       SD +  NR+GK
Sbjct: 570 QGEPLTGKLTPPPGATIEHVL------MAADNQKLLMASDAGYGFVCTFSDLVARNRAGK 623

Query: 674 IAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISL 729
             + L    ++L+      ++D+LL  T+ G+ + FP+  +   +   G   V +     
Sbjct: 624 AMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQA 683

Query: 730 AKGDQVISMAIVL 742
           A G+  +   +VL
Sbjct: 684 AAGEDTLKWLLVL 696


>gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5]
 gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 752

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 259/788 (32%), Positives = 416/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ QEP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IIVTALPHQVSGAKVLEQIAGQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R     AD ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDG-KPQLKNLRALLVEWLEFRVT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P   R +L++R       
Sbjct: 364 TVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP---RAKLIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R E + L  E  + 
Sbjct: 414 -------------------FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L+S ++L  +++ ELL   +     RR+ IV       + + + +  E + + +S  
Sbjct: 455 QALLNSEAKLKKLVRTELLQDAETYGDDRRSPIVARAEAKALSENELMPTEPVTIVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGYKTAAPGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+D++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGRLTPPPGATFECVL-LPDDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  ++L+       ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNNAKVLAPRPVADREQNWLASVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   VL   A           + A +R +S   +++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDIAVLPDGATL--------VLQAGKRTLSLKADDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
 gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
          Length = 750

 Score =  369 bits (948), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 314/544 (57%), Gaps = 39/544 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 15  IHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE R+
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNIDGDGAAAYRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+ +G+D VDFR  Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 135 TDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I +PD  ++ L+E I GPD PTG VI+  R  I  AY TGRG   +R   
Sbjct: 195 HELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILEAYKTGRGGFRVRAKW 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+RDES      V++  
Sbjct: 255 ETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDVRDESAEDVRIVLVPK 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R   A +++  L+R + L+S   +NM  L+ G  P+   L  +L  ++A R++V+VRR+
Sbjct: 315 NRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEVLSEWLAHRKDVLVRRS 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L     R  +L GL +A  NLDEV+RIIR    P    +++M   W+          
Sbjct: 375 RHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEP----KQVMMAKWS---------- 420

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  AIL +RL  L  L   +IR E + L  E  E   +L+S
Sbjct: 421 ---------------LTDNQAEAILNMRLRNLRKLEEFEIRKEFDELSSEKAEIEGLLAS 465

Query: 494 RSRLLGIIKQELLSVKDELDTP-----RRTRIVEGL-LDME--DEDCIVREDMVVTVSHL 545
             +    +  E+  VK +         RRT+  +    D+E   +  I +E + + +S  
Sbjct: 466 DEKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQK 525

Query: 546 GYVK 549
           G+++
Sbjct: 526 GWIR 529


>gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
 gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
          Length = 751

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 258/747 (34%), Positives = 392/747 (52%), Gaps = 75/747 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I    E  E G+  +++    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDQI----EINEDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 57  SELGLKNSAKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +LG+ TVD++PN+DG+ +EPV+L AR PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMAT+IP HNLGEV   C+ ++ +P   LD L E + GPDFPT A +I  R  +
Sbjct: 176 ATGIAVGMATDIPPHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHEL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRGSI +R V   E +      IV+T +P+QV+ A +LE+IA+ +  K++  + 
Sbjct: 236 IRMYATGRGSIKMRAVYTREGSD-----IVITALPHQVSGARILEQIAQQMNAKKLPMVQ 290

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFT 353
           DLRDESD +    ++ + R    DV  ++  L+  T L+  + V  NM+ L+G +P    
Sbjct: 291 DLRDESDHENPTRLVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDG-RPRVRG 349

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++ FR   V RR ++ L+K  +R H L GL IA  N+DEV+ IIR   +P+  
Sbjct: 350 LYDILSEWLEFRITTVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDPKP- 408

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              LM+R                            +S++Q  AILEL+L  L  L    I
Sbjct: 409 --RLMER--------------------------FGISDIQAEAILELKLRHLAKLEEMKI 440

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R E   L  E K+   +L S  +L   I +EL +  +     RR+ ++  E    M++ +
Sbjct: 441 RGEQAELEKERKDLESVLGSAQKLKNKIVKELEADIERYGDARRSPLIEREEARAMDETE 500

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHT 587
            +  E + V +S  G+V            R  KG     +G+  +  D +  +    ++ 
Sbjct: 501 LVGAEPVTVILSQKGWV------------RAAKGHDIDAAGLSYKTGDALLGIAQGKSNQ 548

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +V+F  S G  Y      LP  S + +G+ LI  L+   G     ++    D   +    
Sbjct: 549 TVIFIDSTGRSYTLPAHGLP--SARGQGEPLIGKLTPPPGASFEALL-MGADHDRY---- 601

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQC 705
            + A+  G     KLSD    N++GK  + +    ++L+    +      +      G+ 
Sbjct: 602 -LLASDAGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDREYVAAVANDGRL 660

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKG 732
           + FP+  +   A      + GI  AK 
Sbjct: 661 LVFPLKELPELARGKGNQMMGIPSAKA 687


>gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016]
 gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016]
          Length = 761

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 249/746 (33%), Positives = 398/746 (53%), Gaps = 66/746 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP   L  LM+ ++GPDFPT A +I   + ++  Y +GRGS+ +R
Sbjct: 188 HNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGRGSVKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR E
Sbjct: 303 VIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDN-RPQVKGLVQILTEWITFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R       
Sbjct: 362 TVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E K+ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L S  RL  ++K+E+ +  ++    RR+ +V  E    + + D +  E + V +S  
Sbjct: 453 EELLGSERRLNTLLKKEIRADAEKFGDDRRSPLVVREEAKALTERDLMPNEAITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++      +    +G   ++G     + ++      S   +VL  S  G  Y  +   
Sbjct: 513 GWIRHA--KGHEVDCQGLSYKAG-----DSYLAHACGKSNQQAVLLGSD-GRSYSLESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L++  G  I  ++   E+E  W     +  +  G     K SD 
Sbjct: 565 LP--SARGQGEPITGRLNITPGSSIRQVI-MGEEEQLW-----LIGSDAGYGFVCKGSDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L    E+++         +DIL  T  G+ + FPI  +          
Sbjct: 617 LSKNRSGKALVSLPENAEVMTPSAVLDLDNDDILAITNQGRMLMFPIKDLPQLGKGKGNK 676

Query: 724 VRGISLAKG---DQVISMAIVLHADA 746
           +  I  AK    ++++S  I L   A
Sbjct: 677 IINIPAAKAKAKEEILSHLIALPKGA 702


>gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
 gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 256/742 (34%), Positives = 383/742 (51%), Gaps = 83/742 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY 
Sbjct: 8   DEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 68  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL +LG+ TVD+ PN+DG+ +EP VL AR P+VL+NG  GIAVGMAT+I
Sbjct: 127 TESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ EV   C+ ++D PD  +D L E I+GPDFPT A +I  R  ++  Y TGRGS+ 
Sbjct: 187 PPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYETGRGSLR 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R      +   +  ++V+T++P+QV+   +LE+IA+ ++ K++  +ADLRDESD +   
Sbjct: 247 MRA-----RWIRENGEVVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDESDHENPT 301

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFRE 366
            ++ + R    D+  ++  L+  T L+  + VN+ V  N  +P    L  IL  ++AFR+
Sbjct: 302 RLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILTEWLAFRK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+    ELM R      
Sbjct: 362 TTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKPKA---ELMAR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS  Q  AILEL+L  L  L    IR E + L  E  E
Sbjct: 413 --------------------FGLSAEQAEAILELKLRHLAKLEEMKIRGEQDELSAERDE 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK EL    +     RR+ IV  E      + D +  + + V +S 
Sbjct: 453 LQAILGSEDRLRELIKTELEQDAETFGDDRRSPIVEREEARAFSETDLVSNDPVTVVLSD 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D          +   +F  S G  Y 
Sbjct: 513 KGWV------------RAAKGHDIDPAGLSYKSGDRFALAAKGRNNQQAIFLDSTGRAYS 560

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHGNVRR 659
                LP  S + +G+ L   ++   G   +  +M  PE ++       +  T  G    
Sbjct: 561 LMAHSLP--SARGQGEPLTGRINPPSGATFSGLLMGNPERKT-------LLVTDGGYGFV 611

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL---GQCVRFPISAIRVF 716
             L+D I  NR+GK  + +     I+      +    L    +   G+ + FP+S +   
Sbjct: 612 TSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETASTLYLAAISNEGRMLVFPLSELPEL 671

Query: 717 AGRNSVGVRGISLAKGDQVISM 738
           A             KG+++IS+
Sbjct: 672 AK-----------GKGNKIISI 682


>gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54]
          Length = 773

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 268/733 (36%), Positives = 378/733 (51%), Gaps = 75/733 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E G  ++++    + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+    K 
Sbjct: 15  DEGGDAAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKP 74

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYT
Sbjct: 75  VKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYT 134

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP
Sbjct: 135 EARLTPIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIP 194

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CVA+I  P +    L  +I GPDF  G  +I     I   YA GRGS+ +
Sbjct: 195 PHNLREVAQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAADIAQIYAGGRGSLKV 254

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RI 293
           R     E+ +  + Q+VVTE+P   +   +LE+I E+   K                  +
Sbjct: 255 RARWQFEEMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVM 314

Query: 294 VDIAD-LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKP 349
           +++ D +RDES +    R+V E K      D  +N L   TS++S  SVN+V +    +P
Sbjct: 315 LNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSASVNLVCIGTDGRP 374

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            +  L  IL  ++AFR   V+RRT++ L+K  DR HVL G  +   N+DEV++ IR S  
Sbjct: 375 RQKGLRDILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDE 434

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           P  A   LM+R                            LS+ Q   ILE+RL +L  L 
Sbjct: 435 PRAA---LMER--------------------------FNLSDRQAEDILEVRLRQLARLE 465

Query: 470 RDDIRNELNSL---GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
              I  EL       + ++E LD  ++  RLL  IK+     K   D  RRT ++E    
Sbjct: 466 GFKIEQELEDKRKEQVALQELLDNPNTLKRLL--IKEIEADAKQYGDD-RRT-LIETAER 521

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              E  ++ E + V VS  G++        RA++  G   S    +  D +   F   T 
Sbjct: 522 AVLETKVLDEPVTVIVSQKGWL--------RARQGHGHDASQFGFKQGDDLYGAFECRTT 573

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            +++     G VY   V  LP  S +  G+ +  ++ L  G RI   +    D S W   
Sbjct: 574 DTLIAMGDNGRVYSVPVAGLP--SARGDGQPVTTMIDLESGTRIVHTIAAAAD-SRW--- 627

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQC 705
             + AT+ G     KLSD     R+GK  + L++ DE+L  V        + L ++ G+ 
Sbjct: 628 --LLATRGGYGFAAKLSDMTSRQRAGKQFITLEAGDELLRPVPLFEGATQLALLSQKGKF 685

Query: 706 VRFPISAIRVFAG 718
           + F +  ++  +G
Sbjct: 686 LVFGLDEVKSLSG 698


>gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
 gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
          Length = 752

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 258/768 (33%), Positives = 405/768 (52%), Gaps = 87/768 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT A +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R      D +++ L+  T L+  F V  NM+ L+  +P+   L+ ILK 
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILKE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P      LM R
Sbjct: 355 WIEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPV---LMSR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +SE+Q  AIL+++L  L  L    IR E   L
Sbjct: 412 --------------------------FNISEIQANAILDIKLRNLAKLEEFKIRAEQEEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E      + + D +  E +
Sbjct: 446 EAEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPI 505

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSS 594
            V +S  G+++      +     G   +SG          D F+ S    ++   +F  S
Sbjct: 506 TVVLSEKGWIRHA--KGHEVDAEGLNYKSG----------DKFLASAKGKSNQQAVFLGS 553

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y  +   LP  S +++G+ +   L+++ G  I  ++   E+E  W     +  +  
Sbjct: 554 DGRSYSLESHSLP--SARSQGEPITGRLNVSPGSSIRQVV-MGENEQLW-----LVGSDA 605

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISA 712
           G     K SD +  N+SGK  + L    E++          N IL  T  G+ + FPI  
Sbjct: 606 GYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKD 665

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           +             +S  KG+++I++       A   ER  ++ H+ A
Sbjct: 666 L-----------PQLSKGKGNKIINI-----PSAKAKEREEFVSHLMA 697


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 231/695 (33%), Positives = 376/695 (54%), Gaps = 62/695 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +   + Y
Sbjct: 10  DKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQSY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++DGD  AA RYT
Sbjct: 70  AKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP
Sbjct: 130 EARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN+ E+ D  + +I +PD++ + L + + GPDFPTG +++  +  I+ +Y  GRG   +
Sbjct: 190 PHNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEESYRVGRGFFRL 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E  S     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D++DES      V
Sbjct: 250 RSRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRIV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           ++   R    ++++  L++ T  +  F +N+  L+ G  P   +L   L+ ++  R+EV+
Sbjct: 310 LVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLEHRQEVL 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ Y L++   R  +L G  IA  NLDEV++IIR    P   +++L+ R         
Sbjct: 370 IRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEP---KKQLISR--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  AIL +RL  L  L   +IR E  SL  E ++  +
Sbjct: 418 -----------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFESLKAEKEKLQN 460

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LDMEDEDCIVREDMVVT 541
           +L+S  +   II +E+  V++    +TP   RRT   E     LD   +  I +E + + 
Sbjct: 461 LLASPIKQWKIISEEIKKVRNTFGPETPLGKRRTTFEEAPRHDLDDIQQAMIEKEPITIV 520

Query: 542 VSHLGYVKRVP--LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +S  G+++ +   L+ Y+A          +  ++ D +   F   T   ++  S+ G  +
Sbjct: 521 ISEKGWMRALKGHLNDYKA----------LSFKEGDSLKLAFPAFTTDKIVLISTGGKFF 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP G  +  G+ +  ++ ++    + T      +E       ++  + HGN   
Sbjct: 571 AIGANSLPGG--RGHGEPIRLLVDMDDEHDVLTAFVHHAEEK------LLLVSSHGNGFI 622

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              ++ I   R GK  M + + D+   V+ C Q N
Sbjct: 623 VSSAEVIANTRKGKQVMNVKAPDK---VKLCVQVN 654


>gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1]
 gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum
           aromaticum EbN1]
          Length = 786

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 255/757 (33%), Positives = 401/757 (52%), Gaps = 74/757 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E    G   + +    + +YL YA++V+  RA+P + DG+KPV RRIL+ M +M +   
Sbjct: 25  NEALPPGDGPLPLDRHAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAA 84

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K+VK AR+ G+V+GKYHPHG+ ++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA 
Sbjct: 85  SKHVKSARVVGDVIGKYHPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAM 144

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTECRL   A  LL ++ + TVDF PNYDG+F EP +L AR P VL+NG  GIAVGMAT
Sbjct: 145 RYTECRLTPIAELLLAEIDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMAT 204

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGS 247
            IP HNL EV D    +I +PD  LD ++ ++ GPDFP G  ++     I++AYA GRGS
Sbjct: 205 EIPPHNLREVADAVCHLIRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGS 264

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE----------------K 291
           + +R   H+E+ +  + ++++ E+P+ V+ A++L  I  L                   K
Sbjct: 265 LRMRARWHVEELARGQWRVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLK 324

Query: 292 RIV--DIADLRDE-SDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMV----- 342
           ++V   +  +RDE SD+   R+V+E +    S D  +  L  +TSL++  SVNM      
Sbjct: 325 QLVLGVLETVRDESSDKSPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHG 384

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            ++G +P++  L+ IL+ ++ FR   V RRT++ L++   R H+L G  IA  ++++V+R
Sbjct: 385 PVHGGRPQQKNLVQILREWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIR 444

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S  P+ A                LID                LSE+Q   ILE+RL
Sbjct: 445 VIRESDEPKPA----------------LID-------------AFGLSEIQAEDILEIRL 475

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            +L  L    I  EL  L  E ++   +L SR+ +  +I +E+     +    RRT I  
Sbjct: 476 RQLARLEGFRIEKELAELKEEREKLQHLLDSRAAMTKLILKEITDDAKKYGDERRTLIES 535

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  E  +  E + V VS  G+V        RA++  G   + V  +  DF   L  
Sbjct: 536 VAAVAPAEISVPDEPVTVIVSKNGWV--------RARQGHGIDAAAVTYKAGDFAFALVE 587

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             +   ++   + G  Y  +V  LP G  +  G  +  ++    G ++  ++   E ES+
Sbjct: 588 TRSTWPLVVLDTHGRAYTIRVAELPGG--RGDGVPIATLVDFQNGAKLAQVVSA-EPESA 644

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           W     +FA   G      L +     R+GK  M ++  +++L+      E  I   ++ 
Sbjct: 645 W-----MFANSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPARVLGER-IAAVSEN 698

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           G+ + FP S ++V AG   V V  ++L +G+ ++++A
Sbjct: 699 GRLLVFPRSEMKVQAGGRGVIV--MALDEGESMVAVA 733


>gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
 gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
          Length = 761

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 399/731 (54%), Gaps = 63/731 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           V+  K      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++      +     G   +SG     + ++      S   +V F  S G  Y  +   
Sbjct: 513 GWIRHA--KGHDVDAEGLNYKSG-----DKYLAHARGKSNQPAV-FLGSDGRSYSLESHS 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +   L++  G  I  ++   ED+     L++V  +  G     K +D 
Sbjct: 565 LP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ-----LWLV-GSDAGYGFVCKGADL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A      
Sbjct: 617 LSKNRSGKALVTLPANSEVMTPKAIEDLDSDEILAITNQGRMLLFPIKDLPQLAKGKGNK 676

Query: 724 VRGISLAKGDQ 734
           +  I  AK  +
Sbjct: 677 IINIPAAKAKE 687


>gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 764

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 252/735 (34%), Positives = 393/735 (53%), Gaps = 74/735 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 22  EQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALSKHKKSARTVGDVLGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + +  LL
Sbjct: 82  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEARLSRFSELLL 140

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TV++ PN+DG+ +EPVVL AR P++L+NG  GIAVGMAT+IP HN  EV   CV
Sbjct: 141 SELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIAVGMATDIPPHNAREVAHACV 200

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNP+  LDALM  ++GPD+PT A +I  R  I+  Y TG+GSI  R V + E   GD
Sbjct: 201 ELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDIRKIYETGKGSIKQRAVWNEE--DGD 258

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              IV+T +P+Q + A ++E+IA  +  K++  + DLRDESD +    ++ + R    DV
Sbjct: 259 ---IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDESDHENPTRLVIVPRSNRVDV 315

Query: 323 --ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  L+  T L+  + VN+  L    +P+   L  IL  +++FR E V RR +Y L+K
Sbjct: 316 EGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDLKTILTEWLSFRRETVRRRLQYRLDK 375

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL IA  N+DEV+ IIR    P    R +M+R                   
Sbjct: 376 VLARLHILEGLLIAYLNIDEVIEIIRTEEEPG---RVMMER------------------- 413

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +SE Q  AILEL+L  L  L    +R E N L  E  +   IL S  RL  
Sbjct: 414 -------FNISEAQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLST 466

Query: 500 IIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           ++K+E+L+  ++    RRT +VE    + + +++    E + V +S  G+V         
Sbjct: 467 LLKKEILADAEKYGDDRRTPLVERATAVALTEKELTPSEPVTVILSDKGWV--------- 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTH----TSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG    V        D ++   H       +F S+LG  Y  +   LP  S ++
Sbjct: 518 ---RAAKGHDVDVEGLSYKAGDNYLAHAHGRSNQQAVFLSTLGRTYSLEAHTLP--SARS 572

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSDFIQINRSG 672
           +G+ L    +L  GE +  ++   E E      Y++ +   +G V   K  D I  N++G
Sbjct: 573 QGEPLTGRFALGAGEEVRHLVMGNEGEP-----YLICSDAGYGFV--CKYDDLIGKNKNG 625

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGI 727
           K  + +     +++ +     + D+ +  +  G+ + FP++ + V     G   + +   
Sbjct: 626 KALLTVPEGGLVMAPQKIGAPDTDLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSA 685

Query: 728 SLAKGDQVISMAIVL 742
            +   ++ + MA V+
Sbjct: 686 RVKAREEFVVMAAVI 700


>gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32]
 gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus]
 gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32]
          Length = 752

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 258/768 (33%), Positives = 405/768 (52%), Gaps = 87/768 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT A +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R      D +++ L+  T L+  F V  NM+ L+  +P+   L+ ILK 
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILKE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P      LM R
Sbjct: 355 WIEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPV---LMSR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +SE+Q  AIL+++L  L  L    IR E   L
Sbjct: 412 --------------------------FNISEIQANAILDIKLRNLAKLEEFKIRAEQEEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E      + + D +  E +
Sbjct: 446 EAEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPI 505

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSS 594
            V +S  G+++      +     G   +SG          D F+ S    ++   +F  S
Sbjct: 506 TVVLSEKGWIRHA--KGHEVDAEGLNYKSG----------DKFLASAKGKSNQQAVFLGS 553

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y  +   LP  S +++G+ +   L+++ G  I  ++   E+E  W     +  +  
Sbjct: 554 DGRSYSLESHSLP--SARSQGEPITGRLNVSPGTSIRQVV-MGENEQLW-----LVGSDA 605

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISA 712
           G     K SD +  N+SGK  + L    E++          N IL  T  G+ + FPI  
Sbjct: 606 GYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKD 665

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           +             +S  KG+++I++       A   ER  ++ H+ A
Sbjct: 666 L-----------PQLSKGKGNKIINI-----PSAKAKEREEFVSHLMA 697


>gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
 gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
          Length = 780

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 269/760 (35%), Positives = 390/760 (51%), Gaps = 84/760 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   II  +EE   G+T   +    + +YL YAI+ I  RA+PD+ DG KPV RRILF M
Sbjct: 1   MDTEIILDEEESTDGLT---LARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G+V+GKYHPHG++A YDA+ RMAQD+SLR  L++GQGNFGS 
Sbjct: 58  HEMGLGPAAKPVKSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD++ + TV+F PNYDGS  EP +L AR P +L+NG  
Sbjct: 118 DGDGAAAMRYTEARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAV MAT IP+HNL EV    +A+I +P +  +ALM+I+ GPDFP G  I+  +  +  
Sbjct: 178 GIAVAMATEIPSHNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
           AY +GRGSI +R   HIE+ +  + Q+VV E+P+ V+   +LE++ EL   K        
Sbjct: 238 AYRSGRGSIRVRARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKAL 297

Query: 292 ---------RIVDIAD-LRDESDRQ-GYRVVIELKRGASADVIL-NQLYRYTSLQSLFSV 339
                    +I+++ D +RDES R+   R+V E K       +L N L   TSL++  S+
Sbjct: 298 TPEQLQAKSQILNVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSI 357

Query: 340 NMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V L   K P + TL  IL+ ++ FR   V RR+ + L K  DR H+L G  + + N+D
Sbjct: 358 NLVMLGQDKRPRQKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A   LMQ                             L+E Q   IL
Sbjct: 418 EVIRIIRESDEPKPA---LMQ--------------------------AFGLTERQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E K+   +L S + L   + +E+ +        RRT
Sbjct: 449 EIRLRQLARLEAIRIEQELKELFDERKKLQGLLGSEATLKKAVIKEIEADIKTYGDDRRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            ++E       E   V E + V +S  G+V        R+++  G        +  D + 
Sbjct: 509 -LIEAAEKAAVEARQVEEPVTVIISAKGWV--------RSRQGHGHDARQFNFKTGDELA 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             + V T   +   +S G VY   V  LP  S +  G  + + + L  G +I      P 
Sbjct: 560 GAYEVKTTDQLHALASNGRVYSIPVAGLP--SARGDGVPVTSFVELEAGSQILHAFAAPA 617

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD----EILSVETCTQEN 694
           D        V+ AT+ G        D+    ++GK  + L+  D     +L   + T   
Sbjct: 618 DAG------VLLATEKGFGLTCVAGDWQSRMKAGKHFLTLEEGDVPLPPVLFDASRTDAT 671

Query: 695 DILLTTKL-----GQCVRFPISAIRVFAGRNSVGVRGISL 729
            + L+        G+ + +P+S ++        G RG++L
Sbjct: 672 VVCLSDGQGGGDKGRVLAYPVSEVKTL----HKGGRGVTL 707


>gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
 gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
          Length = 748

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 246/742 (33%), Positives = 394/742 (53%), Gaps = 84/742 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL++LG+ TVD++PN+DGS  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+    V +++NP   L+ L+ +I+GPD+PT A +I  +  I   Y  GRGSI +
Sbjct: 187 PHNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADIVKMYEQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E+      +IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAVWKKEEN-----EIVIYALPHQASPSKIIEQIATQMRNKKLPLVEDIRDESDHENPIR 301

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + VNM  + L+G KP    L+ IL  ++ FR 
Sbjct: 302 IVLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLVTILTEWLHFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             VVRR  Y L+K  +R H+L GL  A  N+D+V+ IIR    P+    EL++R      
Sbjct: 361 TTVVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEPKA---ELIER------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+ +Q  AIL LRL  L  L    ++ E + L  E  E
Sbjct: 412 --------------------FALTGIQADAILNLRLRHLAKLEEHQLQAEQHQLEHERNE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L+S  RL  +IKQE+        +PRR+ ++E      + + D    ED+ V +S 
Sbjct: 452 LQRLLASDRRLNNLIKQEIQQDAKAFVSPRRSPLIERAEAKAIAESDLTPTEDITVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  R  D         ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHTRGRSNQPVVFLDSTGRAYT 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGNVRR 659
                LP  S +++G+ L + +SL +G  I  + M  PE +       ++ A+  G    
Sbjct: 560 IDPTTLP--SARSQGEPLTSKISLPEGASIQQVLMANPESK-------MLMASDAGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA 717
              +D I  N++GK  + L    +IL  +    + E  I+  + + + + FP++ +    
Sbjct: 611 CTFNDLISRNKAGKAVISLPENAKILVPQWIENSDELSIVAMSTINRMLVFPLTELPT-- 668

Query: 718 GRNSVGVRGISLAKGDQVISMA 739
                    ++  KG++++++A
Sbjct: 669 ---------LTKGKGNKIMNIA 681


>gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
 gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
          Length = 749

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 255/747 (34%), Positives = 402/747 (53%), Gaps = 74/747 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   ++ L E + GPDFPT A VI  +  +   Y TGRGS+ +
Sbjct: 189 PHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADLLKLYETGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRVE--DGD---IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     AD ++  L+  T L+S + V  N++ L+G KP+   L  +L  ++ +R 
Sbjct: 304 IVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDG-KPQVKDLRTLLSEWLVYRV 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+RIIR   +P+     LM+       
Sbjct: 363 GTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPKPV---LME------- 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  L++VQ   IL+ RL +L  L    IR E + L  E ++
Sbjct: 413 -------------------TFGLTDVQADYILDTRLRQLARLEEMKIRGEQDELAKEREK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
            L +LSS ++L  ++++E+L   ++    RR+ IV       + + + +  E + V +S 
Sbjct: 454 LLALLSSEAKLKKLVRKEILEDAEKYGDDRRSPIVARAEAKALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDATGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     +M  PED +    LYV+ A+  G     
Sbjct: 562 LTAHSLP--SARGQGEPLTGRLTPPPGATFECVM-LPEDSA----LYVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT-TKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +  ++++ +     E+D L   T  G+ + F ++ +     
Sbjct: 614 KGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLEDDWLAAVTTEGRLLLFKVTDLPQLGK 673

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVL 742
             G   +G+ G  +A  ++ ++   VL
Sbjct: 674 GKGNKIIGIPGERVASREEYLTDLAVL 700


>gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 756

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 248/711 (34%), Positives = 390/711 (54%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  + +IDNP  +L  +M  ++GPD+PT A I+  +  ++  Y TGRGSI +R
Sbjct: 188 HNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H  K  GD   IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWH--KEGGD---IVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  F V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRA 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E   L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 EQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITVVLSDK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG      G+  +  D         ++   +F  S G  Y  
Sbjct: 513 GWI------------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQQAVFLGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L++N G  I  ++   ED+     L++V  +  G     K
Sbjct: 561 ESHSLP--SARSQGEPITGRLNINAGTNIRHVVMGEEDQ-----LWLV-GSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPI 710
            SD +  NRSGK  + L    E+++ +T +  +ND IL  T  G+ + FPI
Sbjct: 613 GSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEILAITNQGRMLLFPI 663


>gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 750

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 247/747 (33%), Positives = 392/747 (52%), Gaps = 82/747 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI    + +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +IDNP   LD L+ +++GPD+PT A +I  +  I+  Y  GRGS+ +
Sbjct: 186 PHNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +I++T +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RAV--WKKEDG---EIIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHENPIR 300

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  ++  L+  T L+  + V  NM+ L+  +P    L+ IL  ++ FR 
Sbjct: 301 IVLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDN-RPAVKNLVQILTEWLQFRR 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR +Y LNK  DR H+L GL IA  N+DEV+ +IR    P+ A             
Sbjct: 360 TTVTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAA------------- 406

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              LID                LSE Q  AIL LRL  L  L  ++++ E + L  E   
Sbjct: 407 ---LIDRFG-------------LSETQAEAILNLRLRHLAKLEENELQAEKDRLEEERDS 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK+E+        +PR + +V+      + + D    E + V +S 
Sbjct: 451 LQLILGSERRLNTLIKKEIQQDAQTYASPRLSPLVQRAEAKAISESDMTPAEPVTVILSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYK 600
           +G+V            R  KG    V        D ++      ++ + +F  S G  Y 
Sbjct: 511 MGWV------------RCAKGHDIDVQNLSYKAGDKYLSHAYGKSNQAAVFIDSTGRSYA 558

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   LSL  G  +  ++   +D+ +     ++ A+  G     
Sbjct: 559 LDPLSLP--SARSQGEPLTGKLSLPAGASVEHVL-MEQDKQA-----LLMASDAGYGFIC 610

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGR 719
           +  D I  N++GK  + L    ++L+      EN  L+  T  G+ + FP+  +   A  
Sbjct: 611 QFDDLIARNKAGKALISLPENAKVLTPLRIDNENARLVALTSAGRMLIFPVKDLPSLAK- 669

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA 746
                      KG++++++    HA A
Sbjct: 670 ----------GKGNKIVTIPAA-HAKA 685


>gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
 gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
          Length = 754

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 255/765 (33%), Positives = 401/765 (52%), Gaps = 80/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H   S E    G+    +    + +YL YA+ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDHNAMSLE----GVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ ++ R  L++GQGN+G+ 
Sbjct: 57  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EP +L +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMAT+IP HN  EV   C  +++NP  +L+ LM  ++GPD+PT A +I  RT I
Sbjct: 176 VTGIAVGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  +    G   +IV+T +P+QV+ + ++E+IA  ++ K++  + 
Sbjct: 236 AKIYQTGRGSVKMRAVYQV--IDG---EIVITALPHQVSGSKLIEQIASQMQAKKLPMVT 290

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFT 353
           DLRDESD +    ++ + R    D+  ++  L+  T L+  + V  NM+ L+  +P    
Sbjct: 291 DLRDESDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDN-RPGVRD 349

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++ FR + V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+ A
Sbjct: 350 LKSILSEWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAA 409

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              LM R                            LSE Q  AILE++L +L  L    I
Sbjct: 410 ---LMSR--------------------------FGLSEKQAEAILEIKLRQLAKLEEIKI 440

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           R E   L  E  +   IL S  RL  ++K+ELL+  +     RR+ +VE       E   
Sbjct: 441 RAEQEELAAERDKLQTILGSERRLKTLVKKELLADAETYGDDRRSPLVE-----RGEARA 495

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF---VTDLFIVS----TH 586
           + E  +            P++V  +Q+  G+   G  +  E       D ++      ++
Sbjct: 496 LTEQELTPAE--------PVTVVMSQKAWGRCAKGHDVEPESLSYRAGDGYLAHARGRSN 547

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+F  S G  Y  +   LP  S +++G+ L    +L  G R+  ++   +D+      
Sbjct: 548 QPVVFLESSGRAYTTEPHSLP--SARSQGEPLSGRFNLVAGARLEHVVMGQDDD------ 599

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLT-TKLGQ 704
           + + AT  G     +  + +  N++GK  + + +  EIL  +    Q ND LL  +  G+
Sbjct: 600 HYLMATDAGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQANDRLLAISTEGR 659

Query: 705 CVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISMAIVLHADA 746
            + FP+S + V A   G   +G+        ++ +   +VL   A
Sbjct: 660 MLLFPLSQLPVLAKGKGNKIIGIPSERAKSREEYVKHLVVLPQGA 704


>gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
 gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
          Length = 765

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 247/707 (34%), Positives = 369/707 (52%), Gaps = 57/707 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +   ++  YL YA++ I+GRA+PD+RDG+KPVHRRIL  M  + +     + KCA
Sbjct: 25  IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+A+IYDAL R++Q +++R  L++GQGNFG+VDGD PAA RYTE R+
Sbjct: 85  RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL+ + +D VDFR  Y+   +EP+VL A +PN+L NG  GIAVGMATNIP HN+
Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I  P+   D LME + GPDFPTG +I+     +   Y TG+G   +R   
Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E     + QIVVTEIPYQV K+ ++EK AEL+  K++  + D+ DES  +  RVV+  
Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDES-AEDIRVVLTP 323

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K R     +++ QL+R T L++ F +NM  L+G K P+  ++  +L+A++  R+ V+VRR
Sbjct: 324 KSRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRR 383

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L +   R  VL G  IA  N+DEV+RIIR   +P+ A   L+ R            
Sbjct: 384 NRNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQA---LIAR------------ 428

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q  A+L LRL  L  L   ++R E + L  E      +L+
Sbjct: 429 --------------FELTDAQAEAVLNLRLRALHKLEEMELRKEFSDLKEEKASIEGLLA 474

Query: 493 SRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL---LDMEDEDCIVREDMVVTVSH 544
           S       I  E+   K +         RRT     +   LD      I +E + + VS 
Sbjct: 475 SDELQWKTIAWEVGQTKKKFSKATDLGARRTTFETAMEVDLDAVAAAMIEKEPVTIVVSQ 534

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +      + +  ++ D +   F   T   +L F++ G  Y     
Sbjct: 535 KGWI--------RALKGHAPDFAALTFKEGDKLLTAFHAETTDKLLMFTTAGKFYTLAAD 586

Query: 605 RLPIGSPQARGKALINILSL-NQGERITTIMPFPEDE----SSWNNLYVVFATKH-GNVR 658
           +LP G  +  G+ +  ++ + N  + ++  +  P  +    SS  N +VV  T    N R
Sbjct: 587 KLPGG--RGHGEPVRIMVDMDNDADILSLFIHKPGRKRMLVSSLGNGFVVAETDLIANTR 644

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           + K S  + +    K+    D   E         EN  LL   L Q 
Sbjct: 645 KGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLLIFPLDQV 691


>gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
 gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
          Length = 773

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 264/746 (35%), Positives = 391/746 (52%), Gaps = 76/746 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S D  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+ 
Sbjct: 11  SPDAPESDALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLG 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  A
Sbjct: 68  PDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+
Sbjct: 128 AMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGL 187

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGR
Sbjct: 188 ATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGR 247

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---------------- 289
           GS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                  
Sbjct: 248 GSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLN 307

Query: 290 -EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN 345
            +K ++D+ D +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V + 
Sbjct: 308 TKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIG 367

Query: 346 G-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RII
Sbjct: 368 ADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRII 427

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S  P+ A   LM                              LSE Q   ILE+RL +
Sbjct: 428 RESDEPKAA---LMS--------------------------AFGLSERQAEDILEIRLRQ 458

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++  
Sbjct: 459 LARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQE 517

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                E  +V E + V VS  G+V        RA +  G   +G   +  D +   F   
Sbjct: 518 KRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCR 569

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P D+    
Sbjct: 570 TPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAPADQQ--- 624

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLG 703
              ++ A+ +G     K+ D +   ++GK  M +D+    L+ +        +   +  G
Sbjct: 625 ---LLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPNATQVACLSSGG 681

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL 729
           + + F +  ++  +G    G RG+ L
Sbjct: 682 RLLVFGMDEMKTLSG----GGRGVIL 703


>gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12]
 gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12]
          Length = 757

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 244/710 (34%), Positives = 380/710 (53%), Gaps = 63/710 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  CV ++DNP  DL+ LME + GPD+PT A +I  R  I   YATG+GSI  R
Sbjct: 190 HNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYATGKGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE       +IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYAIENG-----EIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T LQ  F VN+  + LNG +P+   L  IL  ++ FR  
Sbjct: 305 VVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNG-RPQVKGLKQILTEWLEFRLT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L  L +A  N+DEV+ IIR+  NP+    ELM R       
Sbjct: 364 TVTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENPKA---ELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S++Q  AIL+L+L  L  L    I +E   L  E  + 
Sbjct: 414 -------------------FKVSDIQADAILDLKLRHLAKLEEMKITSEQGELATERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  RL  +IK+EL+   +     RR+ +VE      + + +    E + V +S  
Sbjct: 455 QLLLSSDRRLKTLIKKELIQDGETYGDDRRSPLVERSESKALTEHELSPVEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+       +     G G S      + F+      S   SV F  S G  +  +   
Sbjct: 515 GWVR-----CAKGHDIDGNGLS--YKSGDGFLCSAAGRSNQPSV-FIGSTGRAFATETHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +    +L+ GE +  ++   ED+      + + A+  G        D 
Sbjct: 567 LP--SARSQGEPITTRFNLSPGEVMEHVLLGDEDK------FYLLASDAGYGFVGSYKDM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAI 713
           +  N++GK  + L +  +++  +   +     IL  T  G+ + F + A+
Sbjct: 619 VSRNKAGKALLSLPANAKVIKPKLVDKSKVESILAITNEGRMLLFSMEAL 668


>gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3]
 gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 264/746 (35%), Positives = 391/746 (52%), Gaps = 76/746 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S D  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+ 
Sbjct: 11  SPDAPESDALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLG 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  A
Sbjct: 68  PDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+
Sbjct: 128 AMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGL 187

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGR
Sbjct: 188 ATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGR 247

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---------------- 289
           GS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                  
Sbjct: 248 GSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLN 307

Query: 290 -EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN 345
            +K ++D+ D +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V + 
Sbjct: 308 TKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIG 367

Query: 346 G-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RII
Sbjct: 368 ADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRII 427

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S  P+ A   LM                              LSE Q   ILE+RL +
Sbjct: 428 RESDEPKAA---LMS--------------------------AFGLSERQAEDILEIRLRQ 458

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++  
Sbjct: 459 LARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQE 517

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                E  +V E + V VS  G+V        RA +  G   +G   +  D +   F   
Sbjct: 518 KRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCR 569

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P D+    
Sbjct: 570 TPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAPADQQ--- 624

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLG 703
              ++ A+ +G     K+ D +   ++GK  M +D+    L+ +        +   +  G
Sbjct: 625 ---LLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPNATQVACLSSGG 681

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL 729
           + + F +  ++  +G    G RG+ L
Sbjct: 682 RLLVFGMDEMKTLSG----GGRGVIL 703


>gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
 gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
          Length = 751

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 246/719 (34%), Positives = 384/719 (53%), Gaps = 71/719 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+    + +  + +YL Y++ VI+ RA+P + DGLKPV RRI + M ++G+    KY K
Sbjct: 10  EGVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAMSELGLHAGAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL ++G  TVD+ PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP
Sbjct: 129 EAKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNGVTGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV + C+ +IDNP  +L  LM  ++GPD+PT A +I     I   Y TG+GSI +
Sbjct: 189 PHNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDIAKIYETGKGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  IE  SGD   IV++ +P+QV+   +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVFTIE--SGD---IVISALPHQVSGGKILEQIAAQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D+  ++  L+  T L+  F V  NM+ LN  KP+   L  IL  ++ FR 
Sbjct: 304 LVIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLN-EKPQVKGLKKILSEWLVFRH 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  N+DEV+ IIR   +P+               
Sbjct: 363 STVRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDPKA-------------- 408

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
             +LI   D             LS  Q  A+LEL+L  L  L    IR E   L  E  +
Sbjct: 409 --ELISRFD-------------LSVKQAEAVLELKLRHLAKLEEMRIRGEQGELNTERHK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +LSS  RL  ++K+EL++  ++    RR+ I+E      + +++ +  E + V +S 
Sbjct: 454 LEQLLSSDRRLATLVKKELIADAEKFGDERRSPIIERKEAKALTEKELMPNEAVTVVLSQ 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R  KG      G+  +  D   D     ++   +F  S G  + 
Sbjct: 514 QGWA------------RCAKGHDVDAKGLSYKASDGYKDAAEGRSNCPAVFIDSSGRSFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L    +L  G+  T +     D+S       + ++  G     
Sbjct: 562 LDAHTLP--SARSQGEPLTTRFTLAAGK--TFVHALMADDSQQ----YLLSSDAGYGFIG 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
           K SD I  N++GK  + L +   ++  +  T    +  L+ +  G+ + FP+S++ + +
Sbjct: 614 KFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATDHCLIISNEGRMLIFPLSSLPLLS 672


>gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 749

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 247/715 (34%), Positives = 378/715 (52%), Gaps = 73/715 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G   + + D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    KY K
Sbjct: 9   EGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGLSAASKYKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYT
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL +LG+ TVD+ PN+DG+ +EP VL AR PNVL+NGG GIAVGMAT+IP
Sbjct: 128 ESRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAVGMATDIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++DNP   +  L E I+GPDFPT A +I  R  ++  Y +G G + +
Sbjct: 188 PHNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYESGNGGLRM 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYR 309
           R     E T      I++T +PYQV+ + +LE+IA  +  K++  + DLRDESD +   R
Sbjct: 248 RARYEREGTD-----IIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDESDHEHPTR 302

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           +VI+ +      + ++  L+  T L+  + V  NM+ L+G +P+   L+ +L  ++ FR 
Sbjct: 303 LVIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDG-RPQVKGLLTLLGEWLHFRT 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR ++ L+K   R H+L GL IA  N+DEV+RIIR +  P+     LM+R      
Sbjct: 362 ETVRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEPKPV---LMER------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++ Q  AILEL+L  L  L    IR E + L  E   
Sbjct: 413 --------------------FGLTDTQAEAILELKLRHLAKLEEMKIRGEQDELEKERDS 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
               L S +RL  +I++E+ +  ++    RR+ IV       M++ + +  E + V +S 
Sbjct: 453 LEKTLGSAARLKRLIREEIQADAEKFGDERRSPIVARAAAQAMDESELVPTEPLTVVLSK 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G+V        RA +       G+  +  D         ++   +F  S G  Y     
Sbjct: 513 MGWV--------RAAKGHDVDAEGLSYKSGDAFLSAARGRSNQPAVFIDSTGRTYTLPAH 564

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   LS   G R   +M       + ++L+++ +T +G      L D
Sbjct: 565 TLP--SARGQGEPLSGRLSPPDGARFVGVM-----MGAPSDLFLL-STDYGYGFVCSLED 616

Query: 665 FIQINRSGKIAMKLDSRDEILS-----------VETCTQENDILLTTKLGQCVRF 708
               N++GK  + + +  ++L            +   T E   LL T+L +  R 
Sbjct: 617 MQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAATSEGH-LLVTRLNELPRM 670


>gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
 gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
          Length = 735

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 244/729 (33%), Positives = 387/729 (53%), Gaps = 82/729 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+
Sbjct: 8   EDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKF 67

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL
Sbjct: 68  HPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEILL 126

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+    V
Sbjct: 127 GELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNINELAAASV 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNP   L  ++++++GPD+PT A +I  R+ I   Y  GRGSI +R V   E+ +  
Sbjct: 187 KLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWKREENN-- 244

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRG-ASA 320
              IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +   R+V+E +      
Sbjct: 245 ---IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEPRSNRIDY 301

Query: 321 DVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           D +++ L+  T L+  +  ++NM+ L+G KP    L+ IL  ++AFR   V RR  + L+
Sbjct: 302 DGLMDHLFATTDLEKSYRINMNMIGLDG-KPAVKNLLTILTEWLAFRRTTVTRRLNFRLD 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR   NP+    EL+ R                  
Sbjct: 361 KIISRLHILEGLMIAFLNIDEVIEIIRNEDNPKA---ELIAR------------------ 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q  AIL LRL  L  L   +++ E   L  E +    IL S  RL 
Sbjct: 400 --------FQLSDEQAEAILNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLN 451

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +      +PRR+ +VE      + + D    E + V +S  G+V        
Sbjct: 452 NLIKKEIEADAKAFASPRRSPLVERAEAKAISESDLTPTEPVTVILSEKGWV-------- 503

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG    V        D ++      ++  V+F  S G  Y      LP  S +
Sbjct: 504 ----RCAKGHDIDVQNLSYKAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLP--SAR 557

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++G+ +   +SL  G  +  ++   E         V+ A+  G     +  D +  N++G
Sbjct: 558 SQGEPITGKISLPDGATVQCVLMAEESRK------VLMASDSGYGFICQFEDLVSRNKAG 611

Query: 673 KIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  + L    ++L  +     +EN ++  +  G+ + FP+S +             +S  
Sbjct: 612 KAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVSEL-----------PELSKG 660

Query: 731 KGDQVISMA 739
           KG+++I+++
Sbjct: 661 KGNKIINIS 669


>gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z]
 gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z]
          Length = 750

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 246/745 (33%), Positives = 392/745 (52%), Gaps = 72/745 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL E+ D  V ++DNP   LD L+ +++GPDFPT A +I  ++ I+  Y  GRGS+ +
Sbjct: 186 PHNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYEQGRGSVKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV+T +P+Q + + + ++IA+ +  K++  + D+RDE+D++    
Sbjct: 246 RAV--WKKEDG---EIVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDEADQENPVR 300

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R    DV  ++N L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 LVIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILTEWLQFRRA 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+T    LM R       
Sbjct: 361 TVTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKTV---LMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L   +++ E   L  E +  
Sbjct: 411 -------------------FKLSDEQAEAILNLRLRHLAKLEETELKAEKARLEEERQHL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             ILSS  RL  +IK+E+        + RR+ +V  E    + + + +  E + V +S +
Sbjct: 452 EQILSSERRLNTLIKKEIQQDAKTYASTRRSPLVEREEAKAISETEMMPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKE 601
           G+V            R  KG    V        D ++      ++   +F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDVQNLNYKAGDKYLAHAYGKSNQPAVFIDSSGRSYAV 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  +  ++   E+E    N  ++ A+  G     +
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPAGASMEQVL--IENE----NQPLLMASDAGYGFICQ 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +       +LL  T  G+ + FP+  +   +   
Sbjct: 612 FEDLIARNKAGKAVLTLPENAKVLPPKIIKNSTALLLALTHAGRMLMFPVQELPSLSKGK 671

Query: 721 SVGVRGISLA----KGDQVISMAIV 741
              + GI  A    + D V+ + ++
Sbjct: 672 GNKIIGIPAADAKVRSDFVVKLLLI 696


>gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 245/724 (33%), Positives = 379/724 (52%), Gaps = 77/724 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ P
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 119

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD 
Sbjct: 120 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 179

Query: 216 LMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +     +V++ +P+Q
Sbjct: 180 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-----VVISALPHQ 234

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTS 332
           V+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+  ++N L+  T 
Sbjct: 235 VSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTD 294

Query: 333 LQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL
Sbjct: 295 LEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGL 353

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            +A  N+DEV+ IIR    P+ A   LM R                            L+
Sbjct: 354 LVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------------------FGLT 384

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +   
Sbjct: 385 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 444

Query: 511 ELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR-- 566
                RR+ +   E    M + D +  E + + +S +G+V            R  KG   
Sbjct: 445 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDI 492

Query: 567 --SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINIL 622
              G+  +  D         ++  V+F  S G  Y       PI  P ARG+   L   L
Sbjct: 493 DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSARGQGEPLTGKL 548

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +L  G  +  ++   +D+       ++ A+  G       +D +  NR+GK  + L    
Sbjct: 549 TLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 602

Query: 683 EILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISM 738
            ++        +D+LL  T+ G+ + FP+S +   +   G   + +     A+G+  ++ 
Sbjct: 603 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQ 662

Query: 739 AIVL 742
             VL
Sbjct: 663 LYVL 666


>gi|294630344|ref|ZP_06708904.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292833677|gb|EFF92026.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 685

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 223/560 (39%), Positives = 328/560 (58%), Gaps = 43/560 (7%)

Query: 194 NLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV  G    ++NP+      LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI 
Sbjct: 19  NLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIT 78

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE S R G 
Sbjct: 79  MRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 137

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 138 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEV 197

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM          
Sbjct: 198 IVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVDVARGGLM---------- 247

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + E+Q  AILE++L RL  L R  I  E + L  +I E  
Sbjct: 248 ----------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKINEYN 291

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S  R  GI+  EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+
Sbjct: 292 EILASPVRQRGIVSAELAAIVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYI 351

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP 
Sbjct: 352 KRTKTDDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPD 411

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++  L D+   
Sbjct: 412 AGRDARGQHVANLLAFQPDESIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSP 468

Query: 669 NRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721
              G IA+ L  R     DE++  E  + ++D+LL +K  Q +RF  S   +R   GR +
Sbjct: 469 RSGGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSIRFTASDDTLRPM-GRAT 527

Query: 722 VGVRGISLAKGDQVISMAIV 741
            GV+G+S  +GD+++SM +V
Sbjct: 528 SGVKGMSFREGDELLSMNVV 547



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           EG++S    ++L  +E  ++TV+  G+ KRT + D+R   R GKG+R T   K+ E   +
Sbjct: 327 EGDMS---IEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGT---KLKEDDIV 380

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
              F    +  ++  ++KG + R    E+  A R  +G     + +   DE +  +  IR
Sbjct: 381 DHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQIRAIR 440

Query: 899 ESEIV 903
           + E V
Sbjct: 441 DYEAV 445


>gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 759

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 246/734 (33%), Positives = 387/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN+ E+    V
Sbjct: 138 GELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNGTTGIAVGMATDIPPHNVRELAKALV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +ID P + LD ++E ++GPD+PT A +I  R  I+  Y TGRGS+ +R +   +K  G 
Sbjct: 198 ELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEIRKIYRTGRGSVRMRAI--WKKEDG- 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             ++V++ +P+Q + A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 255 --EVVISALPHQTSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRLVIVPRSNRVDM 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++  L+  T L+  +  ++NM+ L+  +P    L+ IL  ++A+R + V RR  Y L 
Sbjct: 313 DQVMAHLFATTDLEKSYRINMNMIGLDN-RPAVKNLLEILTEWLAYRRDTVRRRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL +A  N+DEV+ IIR    P   + +L++R                  
Sbjct: 372 KVLKRLHILEGLLVAFLNIDEVIHIIRTEDEP---KPKLIER------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +SE Q  AILEL+L  L  L    IR E + L  E      +L+S  +L 
Sbjct: 411 --------FGISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDHLQALLASERKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+ +        RR+ +   E    M + D I  E + + +S  G+V        
Sbjct: 463 TLIKKEIQADAQAYGDDRRSPLQEREEAKAMSEHDFIPSEPVTIVLSEGGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     +G+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPTTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++   +D+       ++ A+  G       +D +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCTFNDLVARNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L    + L        +D+LL  T+ G+ + FP++ +   +   G   V +    
Sbjct: 623 KAMITLPENAKALPPIEINGADDMLLAITQAGRMLMFPVNDLPQLSKGKGNKIVSIPSAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  ++   VL
Sbjct: 683 AASGEDKLAWLFVL 696


>gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
 gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
          Length = 784

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 253/676 (37%), Positives = 359/676 (53%), Gaps = 76/676 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYV 72
           S+    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +         K V
Sbjct: 20  SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLGFGGANGASGAKPV 79

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A YDA+ RMAQD+S R  L++GQGNFGS DGD  AA RYTE
Sbjct: 80  KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTE 139

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL +    LLD+L + TVDF PNYDGSF+EP  L AR P  L+NG  GIAVG+AT IP+
Sbjct: 140 ARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL EV D CVA+I  P +  + L  +I GPD+P G  I+  T  I  AY+TGRGS+ +R
Sbjct: 200 HNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISSTAEIAAAYSTGRGSLKVR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIV 294
               IE  +  + Q+VV E+P  V+   +LE+I EL   K                  ++
Sbjct: 260 ARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKAGKKALSQEQVQLKQTVL 319

Query: 295 DIAD-LRDESDR-QGYRVVIELK--RGASADVILNQLYRYTSLQSLFSVN--MVALNGYK 348
            + D +RDES +    R+V E K  R   +++I N L  +TSL+S  S+N  MV L+G K
Sbjct: 320 SVLDVVRDESSKDAAVRLVFEPKTSRIGQSELI-NTLLAHTSLESSASINLTMVGLDG-K 377

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P + TL  +L  ++ FR+  V RR+++ L+K  DR H+L G  + + N+DEV+ IIR S 
Sbjct: 378 PTQKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQSD 437

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P+ A   L+ R                            LSE Q   ILE+RL +L  L
Sbjct: 438 EPKAA---LIAR--------------------------FSLSERQAEDILEIRLRQLARL 468

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               I  EL +L  E  +  +IL S + L  ++ +E+ +   +   PRRT +++      
Sbjct: 469 EAIKIEQELKTLREEQGKLEEILGSPAALRRLLVKEIEADAKQFADPRRT-LIQAEKKAV 527

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  ++ E + V VS  G+V        RA+   G   +    +  D +   F   T  +
Sbjct: 528 LEVKVLDEPVTVVVSAKGWV--------RARSGHGHDAASFAFKAGDGLYATFECRTVDT 579

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES---SWNN 645
           +L F S G +Y   V  LP    +  G+ L  ++ L  G ++      P + +   S + 
Sbjct: 580 LLAFGSRGRIYSVPVASLP--GARGDGQPLTTLIDLESGTQLVHYFAGPANATLLLSASG 637

Query: 646 LYVVFATKHGNVRRNK 661
            Y   AT      R K
Sbjct: 638 GYGFLATVENMTSRLK 653


>gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
 gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
          Length = 755

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 254/745 (34%), Positives = 397/745 (53%), Gaps = 73/745 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN  E+VD CV +IDNP +DL+ LME++ GPD+PT A I+  RT I   Y TGRGSI  R
Sbjct: 190 HNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYETGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V  +E  SG   +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +   R+
Sbjct: 250 AVYSVE--SG---EIVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDESDHESPVRI 304

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VI  +      D ++  L+  T L+  F VN+  + LNG +P+   L  +L  ++ FR  
Sbjct: 305 VIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNG-RPQVKGLKQLLTEWLEFRLT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L  L IA  N+DEV+ IIR+  +P+    ELM R       
Sbjct: 364 TVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDPKA---ELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AIL+L+L  L  L    I+ E + L  E ++ 
Sbjct: 414 -------------------FNLTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  R+  +IK+EL    +     RR+ +VE      + +++ +  E + V +S  
Sbjct: 455 ELLLSSDRRMKTLIKKELKQDAETYGDERRSPLVERSESRALSEQELVPAEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     + +  +  D F+      S H +V F  S G  + 
Sbjct: 515 GWV------------RCAKGHDIDPTALSYKAGDGFLCAASGRSNHATV-FIGSTGRAFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +     L+ GE +   +   ED   +     + A+  G     
Sbjct: 562 TDTHTLP--SARSQGEPVTTRFQLSPGESMAHAL-LGEDGQCF-----LLASDAGYGFIG 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG 718
              D +  N++GK  + L +  ++L  +    ++   IL  T  G+ + F + A+   A 
Sbjct: 614 DYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSESILAITNEGRMLLFSVDALPQLAK 673

Query: 719 RNSVGVRGISLAKGDQVISMAIVLH 743
                + GI+  +      + + LH
Sbjct: 674 GKGNKIIGIASDRAKSREELLVHLH 698


>gi|310287731|ref|YP_003938989.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309251667|gb|ADO53415.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 890

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 220/522 (42%), Positives = 325/522 (62%), Gaps = 28/522 (5%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H      + ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   TTHQAYDPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G +I+GR GI+ AY
Sbjct: 185 IAVGMATNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIGRNGIRGAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG++  R ++H E  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D
Sbjct: 245 ETGRGTLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAID 304

Query: 302 ESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +L+ 
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPHTMGLKEMLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+      
Sbjct: 365 WIDHRRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSR---- 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                    LI + D             L +VQ + IL+LRL RLT + R ++  E + L
Sbjct: 421 ---------LIAVFD-------------LDDVQAQYILDLRLRRLTRMSRIELEAERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
              I+E   IL+S   L  ++  E+     E  TPRRT +++
Sbjct: 459 KRRIEELERILASAQELDRVVVDEMDQAVAEYGTPRRTVLLD 500


>gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
 gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
          Length = 762

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 242/742 (32%), Positives = 395/742 (53%), Gaps = 75/742 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 20  SVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAMSELGLKSTTKPKKSARTVG 79

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG+ A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE ++  
Sbjct: 80  DVLGKYHPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSPD-DPKSFAAMRYTEAKMSA 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ LL +LG+ TVD++ N+DGS QEPV L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 139 YANTLLAELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLNE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV   + ++ NPD+ +  L + I  PD PT A +I  +  ++  Y TGRGS  +R V H+
Sbjct: 199 VVRAAIRLLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDLQAMYETGRGSYKMRAVYHV 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
           ++   ++  +++  +PYQV+   + E+IA+L+ +K++  + D+ DESD +   R+V+EL 
Sbjct: 259 DQQ--EKNLVIIDALPYQVSGNKVQEQIAKLMMDKKLPWVVDIHDESDHENACRIVLEL- 315

Query: 316 RGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           R    DV  +++ L+  T L+S + V  NM+ LNG KP+   L  +L+ ++  R +VV R
Sbjct: 316 RSTRVDVARVMSHLFASTDLESSYRVNMNMIGLNG-KPQVKNLKEVLEEWLISRRQVVTR 374

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L+K   R H+L GL IA  N+DEV+RIIR   +P   ++ELM             
Sbjct: 375 RVQFRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDP---KQELM------------- 418

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        G   LS++Q  AIL++RL +L  L   ++R+E ++L  E     ++L
Sbjct: 419 -------------GKYDLSDIQANAILDIRLRQLARLEEIELRSEKDALEAERATLQELL 465

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            +   L  ++ +EL +   E    R + +V  E    +++ D +  E +   +S  G++ 
Sbjct: 466 DNPESLTQLMIEELEADMKEHGNDRMSSVVEREEATALKESDLVPSEPITAVLSKAGWI- 524

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +       G+  R  D         ++  +    S G  Y  +   L   
Sbjct: 525 -------RAAKGHDVDAKGMSYRSGDSYQAHVHSKSNEKIYIMDSTGRSYSIEAHTL--A 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G  L ++L    G     ++   +D+       ++ A+  G    N L +     
Sbjct: 576 SARGQGDPLTSVLKPPAGASFEQLLAGADDQR------IILASSQGYGFINTLGNLETNQ 629

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-------------ENDILLTTKLGQCVRFPISAIRVF 716
           ++GK  +  D+  ++L+V T  +             +N I + T  G  + F +  +   
Sbjct: 630 KAGKNVINFDADAKLLTVATIDKTDSETPDDAQALTQNQIAVVTSAGYLLIFGVDELP-- 687

Query: 717 AGRNSVGVRGISLAKGDQVISM 738
             +   G + I+L  G++V+++
Sbjct: 688 EQQRGKGNKLINLKAGEEVLAV 709


>gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069]
 gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069]
          Length = 746

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 257/743 (34%), Positives = 395/743 (53%), Gaps = 88/743 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++   KY K
Sbjct: 4   EGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 64  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL +LG+ TV++ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT+IP
Sbjct: 123 ESRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV +++NP  +L  L+E I+GPDFPT A +I  R  I   Y  GRGSI +
Sbjct: 183 PHNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSIRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R  +  EK  GD   IV+T +P+Q + + +LE+IA  ++ K++  ++DLRDESD +   R
Sbjct: 243 R--ARFEKEDGD---IVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENPTR 297

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFR 365
           +VIE  R    D+  ++  L+  T L+  + V  NM+ ++G +P+   L  +LK ++ FR
Sbjct: 298 LVIE-PRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDG-RPQVKNLRVMLKEWLEFR 355

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E V RR ++ L+K  DR H+L GL IA  N+DEV+ IIR    P   + +LM+R     
Sbjct: 356 HETVRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKP---KLKLMER----- 407

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q  +ILEL+L  L  L    I+ E + L  E  
Sbjct: 408 ---------------------FDLSDRQAESILELKLRHLAKLEEMKIKGEQSELEDEAD 446

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
                L S+ R+  +IK+E+  V ++    RR+ IVE      + + + +  E + V +S
Sbjct: 447 WLQLTLGSKQRMKTLIKKEIEEVIEQYGDDRRSPIVERKEAKALSETELLPTEPVTVILS 506

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG      G+  R  D   D     ++   +F  S G  +
Sbjct: 507 EKGWV------------RCAKGHDVDAVGMNYRSGDKYLDSAQGKSNQYAVFLDSTGRTF 554

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S +  G+ +   ++   G      M   ED+  +     +FAT  G    
Sbjct: 555 SLLANTLP--SARGLGEPVTGRVNPIAGAEFMATM-MGEDDDKF-----LFATDAGYGFV 606

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPISAIRV 715
            K SD +   R+GK  + L S  ++  V+ C+ ++      +  +  G+ + FP++ +  
Sbjct: 607 AKFSDLVTKTRNGKAFLNLPSGSKV--VKPCSVKDSASQFCVAVSNEGRMLVFPLADLPE 664

Query: 716 FAGRNSVGVRGISLAKGDQVISM 738
            A             KG+++IS+
Sbjct: 665 LAK-----------GKGNKIISI 676


>gi|224283379|ref|ZP_03646701.1| DNA topoisomerase IV subunit A [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064619|ref|YP_003971344.1| DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313140533|ref|ZP_07802726.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|310866938|gb|ADP36307.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313133043|gb|EFR50660.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
          Length = 890

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 220/522 (42%), Positives = 325/522 (62%), Gaps = 28/522 (5%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H      + ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   TTHQAYDPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G +I+GR GI+ AY
Sbjct: 185 IAVGMATNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIGRNGIREAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG++  R ++H E  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D
Sbjct: 245 ETGRGTLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAID 304

Query: 302 ESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +L+ 
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPHTMGLKEMLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+      
Sbjct: 365 WIDHRRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSR---- 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                    LI + D             L +VQ + IL+LRL RLT + R ++  E + L
Sbjct: 421 ---------LIAVFD-------------LDDVQAQYILDLRLRRLTRMSRIELEAERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
              I+E   IL+S   L  ++  E+     E  TPRRT +++
Sbjct: 459 KRRIEELERILASAQELDRVVVDEMDQAVAEYGTPRRTVLLD 500


>gi|240047650|ref|YP_002961038.1| DNA topoisomerase IV subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239985222|emb|CAT05235.1| Topoisomerase IV subunit A [Mycoplasma conjunctivae]
          Length = 864

 Score =  367 bits (943), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 226/726 (31%), Positives = 394/726 (54%), Gaps = 44/726 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S+ + +   ++ YA  VI  RAIPD+RDGLKPV RRIL+ M  +G++  K Y K A
Sbjct: 8   IINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+++IYDAL RM+Q+W + + L++  GN GS+D DP AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEVRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ +  +L+ L K+ + + PN+D S +EP VL    PN+LVNG  GIA G AT IP HNL
Sbjct: 128 EEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DG +A+I N  I    L  II GPDFPTG ++    GI +A++ G+G I +  V+ 
Sbjct: 188 SEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGGIVYDNGGISDAFSKGKGRISL--VAK 245

Query: 256 IEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            E  + +++  I +++IPY + KA ++ +I ++  E+++  I ++ D+SDR G  + I+L
Sbjct: 246 YEIVNKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISIDL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +  A+ D+++N L + T +Q  +S N VA+    P+  +L  ++K ++   + + ++   
Sbjct: 306 EADANVDLVVNYLLQKTDMQIYYSYNSVAICNNSPKLVSLSEMIKYYLDHLKNIKLKEID 365

Query: 375 YLLNKARDRAHVLVGLAIAVANL-DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           Y L K++ R  ++ G  + VA++ DEV+++IR S N +               IKDLI  
Sbjct: 366 YDLFKSQKRYEIIQGF-LKVADITDEVIKVIRASDNSKIGV------------IKDLI-- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q  AI ++RL RL+ + +++  +E   L  +I+   ++ + 
Sbjct: 411 -----------AHFGFTQIQAEAIAQMRLYRLSKIDQENFLSESKELENKIELLNNLKND 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +     + + L  V++    PR+T+I++    + +  ED I  E++   ++  GY K++
Sbjct: 460 STAFKKFLIKTLKQVQNNFGQPRKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKI 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  +              ++ +DF+  L  ++    +   ++   +      +L   S 
Sbjct: 520 SLKNFSLS-----DLDKYAIKKDDFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSY 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G  L   +   Q E I   +   E++   NN  ++  +KHG  +R  L     + R+
Sbjct: 575 KNIGNDLKIEVDFQQDEYIVAQINISENK---NNSNIILVSKHGLAKRVSLDSLFNL-RT 630

Query: 672 GKIA--MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            K+    KL   DE++         +I + + L + ++     I ++ GRNS GV+  +L
Sbjct: 631 KKLTNIFKLKEHDELIGAYLTDNLANIAIISNLNRSLKVAEIDIPIY-GRNSAGVKLATL 689

Query: 730 AKGDQV 735
            KG+Q+
Sbjct: 690 KKGEQI 695


>gi|302524595|ref|ZP_07276937.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302433490|gb|EFL05306.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 832

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 375/721 (52%), Gaps = 75/721 (10%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +Q+G E + ++     +    MGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS 
Sbjct: 73  IQVGAE-DHEFATEGFVVHNCMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSP 131

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE R+   A  L+ +LG+DTVDFRPNYDGS +EP VL A YPN+LVNG  
Sbjct: 132 D-DGPAASRYTEARMSNEAMLLVGELGEDTVDFRPNYDGSLEEPSVLPAAYPNLLVNGTS 190

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNLGEV+     +I++P+  LD LME + GPD PTG  +LG   ++ A
Sbjct: 191 GIAVGMATNMIPHNLGEVIGAARWLINHPNATLDKLMEYVPGPDLPTGGSLLGLDEVRKA 250

Query: 241 YATGRGSIVIRG---VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDI 296
           Y TGRG + +R       +E + G R+ I VTE+PY V    ++EKI  E+ + KR+  I
Sbjct: 251 YETGRGVVRMRANVETGPLEGSRG-RQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGI 309

Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD++D +DR+ G R+VIE K G +   +L  LYR T L+  F +N + L   +P+   L 
Sbjct: 310 ADVKDLTDRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLK 369

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+  R EVV RRT+Y   K  +R H++ GL IA+ N+D+V+R+IR S N   A+ 
Sbjct: 370 ALLEVFLKHRYEVVTRRTRYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAAAAKD 429

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM +                            LSE+Q   IL+  L RLT   R ++ N
Sbjct: 430 GLMTK--------------------------FKLSEIQATYILDTPLRRLTKYDRLELEN 463

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE------------- 522
           E + L  EI E   IL   S L  ++  EL  +  +  T RRTR+++             
Sbjct: 464 EQDKLRAEIAELTTILEDESVLKKLVSTELAKIAKDFPTERRTRLIDGDLKEVLAASKPS 523

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTD 579
           G L++ D+ C       V +S  G V R       A   +RR G+ +        D V+ 
Sbjct: 524 GPLEVADDPC------QVILSATGLVARTAAESEEASEVRRRNGRVK-------HDAVSA 570

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTI 633
           +   +    VL  +S G  +K  V  LP+   QA       G A   ++ L +GER+  I
Sbjct: 571 VVHTTARGQVLLVTSRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGERVVGI 630

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
            P    E + ++  +   T+ G V+       ++ +    I++K    DEI+     T  
Sbjct: 631 APL--GEQAGDSPGLAIGTRGGVVKVCAPDWPVRSDEFEVISLK--PGDEIVGATWLTDG 686

Query: 694 NDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           N+ L   +     +RF  S IR   G  S G+ G+ LA     I    +   D ++ E +
Sbjct: 687 NETLAFISSDSSLLRFAASLIRP-QGTKSGGMAGMKLAANATAIFFGAIRTDDEEHGEPM 745

Query: 753 C 753
            
Sbjct: 746 V 746


>gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
 gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
          Length = 754

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 254/743 (34%), Positives = 403/743 (54%), Gaps = 76/743 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TG+GS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V HIE   GD   I+VT +P+QV+ A +LE+IA L++ K  ++  +ADLRDESD +   
Sbjct: 250 AVYHIE--DGD---IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
             V+I        +V++  L+  T L+S +  +VN++ L+G KP+   L  +L  ++ FR
Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDG-KPQLKNLRNLLVEWLEFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
              V RR ++ L+K   R H+L GL IA  NLDEV+ IIR + +P+    EL+ R     
Sbjct: 364 INTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKA---ELIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q   IL+ RL +L  L    +R+E ++L  E  
Sbjct: 416 ---------------------FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   +L S ++L  +++ EL+   +     RR+ IV+      + + + +  E + V +S
Sbjct: 455 KLQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTETELLPNEKITVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             G+V            R  KG     +G+  +  D         ++   +F  S G  Y
Sbjct: 515 EKGWV------------RSAKGHDIDATGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSY 562

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S + +G+ L   L+   G     ++  P+D++    LYV+ A+  G    
Sbjct: 563 SVPAHTLP--SARGQGEPLTGRLTPPPGANFECVL-LPDDDA----LYVI-ASDAGYGFV 614

Query: 660 NKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
            K  D    N++GK  + L +  + IL      +E++ L + T  G+ + F IS +    
Sbjct: 615 VKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTTEGRLLVFKISDLPQLG 674

Query: 718 ---GRNSVGVRGISLAKGDQVIS 737
              G   +G+ G  +A  ++ ++
Sbjct: 675 KGKGNKIIGIPGERVASREEYVT 697


>gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 772

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 252/707 (35%), Positives = 364/707 (51%), Gaps = 71/707 (10%)

Query: 1   MTEHIISSD---EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MTE     D    E   G  ++++    + +YL YAI+V+ GRA+PD+ DG KPV RRIL
Sbjct: 1   MTEQATLFDGDTPEPPDGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F M Q+G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQ +SLR  LI+GQGNF
Sbjct: 61  FAMNQLGLNAAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS DGD  AA RYTE RL   +  LLD++   TVDF+PNYDGS +EP +L  R P VL+N
Sbjct: 121 GSRDGDGAAAMRYTEARLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTG 236
           G  GIAVGMAT IP+HNL EV    VA+I NP +    LM II GPDFP+G  +I     
Sbjct: 181 GASGIAVGMATEIPSHNLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAA 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK----- 291
           +   YA GRGS+ +R +  IE+ +  + Q VVTE+P+  +   +LE+I EL   K     
Sbjct: 241 LSEMYANGRGSLKVRALWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGK 300

Query: 292 ------------RIVDIAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSL 336
                        ++ + D +RDES R+   R+V E K +        N L   TSL++ 
Sbjct: 301 KALSPDQLAQKQLMLSLLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETS 360

Query: 337 FSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+N+V + G  +P +  L  IL+ ++AFR + V RR+ + L K  DR H+L G    + 
Sbjct: 361 ASINLVMIGGDGRPRQKGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILL 420

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+RIIR S  P+ A   LM                          G   LS+ Q  
Sbjct: 421 NIDEVIRIIRESDEPKPA---LM--------------------------GAFKLSDRQAE 451

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            ILE+RL +L  L    I+ EL  L  E     ++L++   +  +I +E+ + +      
Sbjct: 452 DILEIRLRQLARLEAIKIQQELAGLRTEKSTLEELLNNPGAMKKLIIKEIDADEKRFGDA 511

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RRT ++E       E  ++ E + V +S  G++        RA+   G   +    +  D
Sbjct: 512 RRT-LIEAAERATVEQKVIDEPVTVVISQKGWL--------RARTGHGHDPAQFAFKAGD 562

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            +   F   T  S+L F S G +Y   V  LP    +  G  +  ++ L  G  +     
Sbjct: 563 DLYRTFECRTLDSLLAFGSNGRIYSIAVSSLP--GARGDGAPISALVELASGSTVLHYFA 620

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              D +      ++ A+  G     + +D I  N++GK  + LD+ D
Sbjct: 621 GSADST------MLLASTAGYGFIARAADMIGRNKAGKAFITLDAGD 661


>gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336]
 gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336]
          Length = 747

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 235/708 (33%), Positives = 383/708 (54%), Gaps = 62/708 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 7   EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TV+++ N+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV D  + ++DNP+ DLD LM  ++GPDFPT A +I  +  I+  Y  GRGSI +
Sbjct: 186 PHNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--Y 308
           R V   +K +G   +I++T +P+Q + + ++ +IAE ++ K++  + D+RDE+D +    
Sbjct: 246 RAV--WKKENG---EIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIR 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
            V++        D ++  L+  T L+  + V  NM+ L+  KP    L+ IL  ++ FR 
Sbjct: 301 LVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDN-KPAVKNLVQILTEWLTFRR 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y L+K   R H+L GL IA  N+DE++ IIR    P    +E++   +N   
Sbjct: 360 QTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKP----KEILIARFN--- 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++ Q  AIL LRL  L  L   +++ E N+L  E   
Sbjct: 413 ----------------------LTDEQAEAILNLRLRHLAKLEEQELQAEKNNLAKERNS 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL+S  RL  +IK+E+        +PR + +VE      + + D    E + + +S 
Sbjct: 451 LEQILNSEIRLNNLIKKEIQQDAKTFASPRLSPLVERAEAKAISETDMTPSEPITIILSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G+V+        A+      R+      ++++T      ++  V+F  S G  Y     
Sbjct: 511 MGWVR-------CAKGHDINARALSYKTGDNYLTHA-CGKSNQPVVFIDSTGRSYTLDPL 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S +++G+ L   L+L  G  I  ++   E++S      ++ A+  G     K  D
Sbjct: 563 SLP--SARSQGEPLTGKLTLPSGATIEHLLIENENQS------LLMASDAGYGFICKFED 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
            +  N++GK  + L     +L          +L+  T + + + FP++
Sbjct: 615 LVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNRMLVFPVA 662


>gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
 gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
          Length = 750

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 254/732 (34%), Positives = 384/732 (52%), Gaps = 73/732 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +  I D  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++G+  + K+ K A
Sbjct: 8   IETQPIKDFTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKKAA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GKYHPHG++A Y+A+  MAQ ++ R  L++GQGN+GS D DP   AA RYTE 
Sbjct: 68  RTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPD-DPKSFAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L+  +  +L +LG+ TVD++PN+DG+  EPVVL AR PNVL+NG  GIAVGMAT+IP H
Sbjct: 127 KLRPYSRLMLHELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EV   C+A++DN  + ++ LM  I  PD+PT A V+  ++ I+  Y TG GSI +R 
Sbjct: 187 NLREVASACIALLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRMRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
              +E+  GD   +V+T +P+Q   A ++E+IA+ +R+K++  + DLRDESD +   R V
Sbjct: 247 KYTVEE--GD---VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIRFV 301

Query: 312 IELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEV 368
           I  +    + D +++ L+  T L+  + VNM  + L+G +P    L  IL  ++ FR + 
Sbjct: 302 ISPRSNRVNIDELMSHLFATTDLERNYRVNMNVIGLDG-RPRVRNLREILVEWLKFRIQT 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL +A  NLDEV+RIIR    P+     LM+         
Sbjct: 361 VTRRLQWRLDKVEKRLHILEGLLVAYLNLDEVIRIIRTEDEPKAV---LMK--------- 408

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AILE +L  L  L    IR E   L  E  +  
Sbjct: 409 -----------------AFKLSDEQAEAILETKLRHLAKLEEMKIRGEQEDLERERDDLQ 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
             L S+ RL  +IK+EL +   +    RR+ +V  E    M++   +  E   + +S  G
Sbjct: 452 KTLGSKQRLKTLIKKELKADAQDYGDDRRSPLVEREAAQQMDETALVPSEPTTIVISEKG 511

Query: 547 YVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +V            R GKG       +  +  D      +  T+   +F  S G  Y   
Sbjct: 512 WV------------RAGKGHDLKPEELNYKAGDGYQHHALGRTNQQAVFIDSNGRTYTLV 559

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP-FPEDESSWNNLYVVFATKHGNVRRNK 661
               P  S ++ G+ L   L +  G     +M   P+D      LY++ AT  G     K
Sbjct: 560 AHSFP--SARSFGEPLTGKLKVKDGAEFVGVMAGKPQD------LYLL-ATDAGYGYVAK 610

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILL-TTKLGQCVRFPISAIRVFAGR 719
           L D +  N++GK  + +    ++L  V   + E D L+  T+ G C    +  +      
Sbjct: 611 LEDMMTRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQGYCGVIKLDELPQLPKG 670

Query: 720 NSVGVRGISLAK 731
             V + GI  AK
Sbjct: 671 KGVKMLGIPPAK 682


>gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 748

 Score =  367 bits (942), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 246/739 (33%), Positives = 388/739 (52%), Gaps = 81/739 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL E+ D  V ++DNP   LD ++ +++GPDFPT A +I  +  I+  Y  GRGS+ +
Sbjct: 186 PHNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRGSVKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +I++T +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RAV--WKKEDG---EIIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVR 300

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   ++  L+  T L+  + V  NM+ L+  KP    L+ IL  +++FR 
Sbjct: 301 IVLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDN-KPAVKNLLQILTEWLSFRR 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   N +  +  LM R      
Sbjct: 360 STVTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIR---NEDEPKPVLMAR------ 410

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AIL LRL  L  L   +++ E + L  E  +
Sbjct: 411 --------------------FELSDEQAEAILNLRLRHLAKLEEHELQAEKDQLEQERAQ 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              ILSS  RL  +IK+E+        +PRR+ IVE      + + + I  E + V +S 
Sbjct: 451 LEQILSSERRLNTLIKKEIQQDAKTYASPRRSPIVERAEAKAISESEMIPAEPVTVILSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +G+V            R  KG      G+  +  D         +    +F  S G  Y 
Sbjct: 511 MGWV------------RCAKGHDIDPQGLNYKAGDKYLAHACGKSSQPAVFIDSSGRSYA 558

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   L+L  G  +  ++   E+E    N  ++ A+  G     
Sbjct: 559 LDPLSLP--SARSQGEPLTGKLTLPAGASVDYLL--IENE----NQQLLMASDAGYGFIC 610

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGR 719
           K  D I  N++GK  + L    ++L  +       +L+  T  G+ + FP+         
Sbjct: 611 KFEDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVALTAAGRMLIFPVK-------- 662

Query: 720 NSVGVRGISLAKGDQVISM 738
               +  +S  KG++++++
Sbjct: 663 ---DLPSLSKGKGNKIVTI 678


>gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
 gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
          Length = 726

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 245/728 (33%), Positives = 381/728 (52%), Gaps = 77/728 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ P
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 119

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD 
Sbjct: 120 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 179

Query: 216 LMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E  +     +V++ +P+Q
Sbjct: 180 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-----VVISALPHQ 234

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTS 332
           V+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+  ++N L+  T 
Sbjct: 235 VSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTD 294

Query: 333 LQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL
Sbjct: 295 LEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGL 353

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            +A  N+DE++ IIR    P+ A   LM R                            L+
Sbjct: 354 LVAFLNIDELIEIIRNEDEPKPA---LMSR--------------------------FGLT 384

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +   
Sbjct: 385 ETQAEAILELKLRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 444

Query: 511 ELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR-- 566
                RR+ +   E    M + D +  E + + +S +G+V            R  KG   
Sbjct: 445 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDI 492

Query: 567 --SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINIL 622
              G+  +  D         ++  V+F  S G  Y       PI  P ARG+   L   L
Sbjct: 493 DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSARGQGEPLTGKL 548

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +L  G  +  I+   +D+       ++ A+  G       +D +  NR+GK  + L    
Sbjct: 549 TLPPGATVDHILMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 602

Query: 683 EILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISM 738
            ++        +D+LL  T+ G+ + FP+S +   +   G   + +     A+G+  ++ 
Sbjct: 603 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQ 662

Query: 739 AIVLHADA 746
             VL + +
Sbjct: 663 LYVLPSQS 670


>gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501]
 gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501]
          Length = 750

 Score =  367 bits (942), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 409/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLNADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E ++GPDFPT A ++  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+S + V  N++ L+G +P+   L  +L  ++ +R  
Sbjct: 305 VIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDG-RPQVKNLRTLLSEWLTYRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR    P+     LM R       
Sbjct: 364 TVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPV---LMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    IR E + L  E +  
Sbjct: 414 -------------------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
           L +L S ++L  ++++ELL   +     RR+ IVE      + + + +  E + V +S  
Sbjct: 455 LALLGSEAKLKKLVRKELLEDAETYGDDRRSPIVERAEARALTENELLPSEPVTVVISEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+             R  KG      G+  +  D         ++   +F  S G  Y  
Sbjct: 515 GWA------------RCAKGHDIDAGGLSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+DE+    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGRLTPPPGASFECVL-LPDDEA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +   +++     ++E+D L   T  G+ + FP+  +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGARVVAPRPLASREDDWLAAVTTEGRLLVFPVRDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ +    VL A A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYLVDLAVLPAGATL--------VLQAGKRTLSLKAEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3]
          Length = 749

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 325/559 (58%), Gaps = 41/559 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I S+ +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLKLNPGQPYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D + L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NLDEV++IIR S  P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  +IL +RL  L  L    IR E  
Sbjct: 416 LR--------------------------FKLTENQAESILNMRLRSLRKLEEFQIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIVEGL-LDMED--E 530
           SL IE ++  ++L+S  +   II +E+  V+     +     RRT   E    D+ D  +
Sbjct: 450 SLKIEKEKLQNLLASNIKQWKIIAEEITRVRKIFGPETFLGKRRTTFEEAPRHDVNDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVK 549
             I +E + + +S  G+++
Sbjct: 510 AMIEKEPVTIVISEKGWMR 528


>gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
 gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
          Length = 773

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 260/735 (35%), Positives = 388/735 (52%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 IAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEISAAYETGRGSLKVRAKWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              LSE Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLSERQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL +L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELEALRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSS 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P D+       ++ A+ +G
Sbjct: 581 GRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAPADQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++
Sbjct: 633 FGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG+ L
Sbjct: 693 TLSG----GGRGVIL 703


>gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
 gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
          Length = 758

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 242/711 (34%), Positives = 385/711 (54%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL ++G+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HN+ E+ D  + +IDNP  DL  +M+ ++GPD+PT A I+  +  ++  Y TGRGS+ +R
Sbjct: 188 HNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTGRGSVKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  F V  NM+ L+  +P+   L+ IL  ++ FR E
Sbjct: 303 VVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDN-RPQVKGLVQILSEWIQFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V +R +Y L+K   R H+L GL +A  NLDEV+ IIR    P+     LM+R       
Sbjct: 362 TVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E   L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  R+  ++K+E+ +  ++    RR+ IVE      M + D +  E + V +S  
Sbjct: 453 EKLLGSERRMNTLLKKEIQADAEKYGDDRRSPIVERAEAKAMTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G++            R  KG             D ++ S    ++   +F  S G  Y  
Sbjct: 513 GWI------------RHAKGHDVDASSLNYKAGDKYLASARGKSNQPAVFLGSDGRSYSL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +   L++N G  I  ++   E+   W     +  +  G     K
Sbjct: 561 ESHSLP--SARSQGEPITGRLNINAGTNIRQVV-MGEESQLW-----LVGSDAGYGFVCK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPI 710
            SD +  NRSGK  + L    E+++       + ++IL  T  G+ + FPI
Sbjct: 613 GSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEILAITNQGRMLLFPI 663


>gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 793

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 278/821 (33%), Positives = 408/821 (49%), Gaps = 100/821 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G   +++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF M +MG+  + K V
Sbjct: 34  EDGKDGLTLAVYAERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGLRADAKPV 93

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GK+HPHG+ + YDAL R+AQ +SLR  LI+GQGNFGS DGD  AA RYTE
Sbjct: 94  KSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 153

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL ++ + TVDF PNYDGSFQEP +L AR P VL+NG  GIAVGMAT IP+
Sbjct: 154 ARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEIPS 213

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL EV    +A++ +P +    L+ I+ GPD+P G  I+     I   Y TGRGSI +R
Sbjct: 214 HNLREVASAAIALMKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETGRGSIKVR 273

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIV 294
               +E+ +  + QIVV E+P   +   +L++I E+   K                  I+
Sbjct: 274 ARWSVEELARGQWQIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQNNLKSTIL 333

Query: 295 DIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPE 350
           ++ D +RDES +    R+V E K +    +  +N L  +TSL+S   +N+V + N  +P 
Sbjct: 334 NVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDGRPR 393

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +  L  IL  +V FR   V RRT+Y L K +DR H+L G  I + N+D+V++IIR S  P
Sbjct: 394 QKGLKEILSEWVEFRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKIIRNSDEP 453

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           ++                   DLI +            LS+ Q   IL++RL +L  L  
Sbjct: 454 KS-------------------DLIKE----------FKLSDRQAEDILDIRLRQLARLEG 484

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL  L  E  +   +L S + L   I +E+ S   +    RRT I E    +  E
Sbjct: 485 IKIEQELKQLQTERDDLEGLLQSDAVLRKRIIKEIESDLKDFGDDRRTLIQEDKRAVA-E 543

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             ++ E + V VS  G+V        R ++      +    +  D +   F V T   + 
Sbjct: 544 TKVIDEPVTVIVSQKGWV--------RVRQGHEHDATQFSFKAGDALYGTFEVRTIDVIQ 595

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G VY  +V  LP    +  G  L + ++L  G ++        D+       V+ 
Sbjct: 596 GFGSDGRVYTVQVSELP--GARGDGSPLTSFVNLATGSQMVAYYAGQPDD------LVLL 647

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVE---------TCTQENDILL 698
           +TK G      +SD    N++GK  + +DS+   D  L             C  E   LL
Sbjct: 648 STKAGYGFLANVSDMSTRNKAGKSFISVDSKVPGDAPLGAAKVKVGMKQVACLSEASKLL 707

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD--QVISMAIVLHADADYDERICYMK 756
              L +  R P             G +G+ L   D  + ++ AI + +D        Y  
Sbjct: 708 VFSLDELKRLP------------TGGKGVILMGLDDKEFLASAIAVGSDG-----ATYSG 750

Query: 757 HMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
              A +   +S D + + S   + + +G+  E R ++ KLK
Sbjct: 751 AGRAGKPTELSLDAKTLKSFAGNRARKGHFVEPRLKDGKLK 791


>gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
 gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
          Length = 749

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 259/789 (32%), Positives = 416/789 (52%), Gaps = 82/789 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   ++ L E I+GPDFPT A VI  +  +   Y +GRGS+ +
Sbjct: 189 PHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADLLKIYESGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRVE--DGD---IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     AD ++  L+  T L+S + V  N++ L+G KP+   L  +L  ++ +R 
Sbjct: 304 IVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDG-KPQVKDLRTLLSEWLVYRV 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+RIIR    P+     LM+       
Sbjct: 363 GTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPKPV---LME------- 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+EVQ   IL+ RL +L  L    IR E + L  E ++
Sbjct: 413 -------------------AFGLTEVQADYILDTRLRQLARLEEMKIRGEQDELAKEREK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
            L +L S ++L  ++++E++   ++    RR+ IV       + + + +  E + V +S 
Sbjct: 454 LLALLGSEAKLKKLVRKEIIEDAEKYGDDRRSPIVARAEARALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDATGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     +M  PED +    LYV+ A+  G     
Sbjct: 562 LAAHSLP--SARGQGEPLTGRLTPPPGATFECVM-LPEDSA----LYVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT-TKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +  ++++ +  T  E+D L   T  G+ + F ++ +     
Sbjct: 614 KGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLEDDWLAAVTTEGRLLLFKVTDLPQLGK 673

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G   +G+ G  +A  ++ ++   VL + A           + A +R ++   +++   
Sbjct: 674 GKGNKIIGIPGERVASREEYLTDLAVLPSGASL--------VLQAGKRTLTLKADDLEHY 725

Query: 776 KNDSSVEGN 784
           K +    GN
Sbjct: 726 KGERGRRGN 734


>gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34]
 gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34]
          Length = 776

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 258/705 (36%), Positives = 363/705 (51%), Gaps = 76/705 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+  + K VK AR+
Sbjct: 16  SLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQAMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++   TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP HNL E
Sbjct: 136 ISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGIAVGMATEIPPHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP+I L  L+ ++ GPD+P G  I+     I   Y +GRGS+ +R    I
Sbjct: 196 VAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIYESGRGSLKVRARWTI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I E+   K                  ++ + D 
Sbjct: 256 EEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTPEQTQLKTTMLSVLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           +RDES +    R+V E K +       +  L  +TSL+S   +N+V +    +P +  L 
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINLVMIGTDGRPRQKGLQ 375

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++ FR   V RRT++ L K  DR H+L G  + + N+DEV+RIIR S  P+ A  
Sbjct: 376 EILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEVIRIIRESDEPKPA-- 433

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+                LS+ Q   ILE+RL +L  L    I  
Sbjct: 434 --------------LIE-------------AFRLSDRQAEDILEIRLRQLARLEAIKIEQ 466

Query: 476 ELNSLGIEIKECLDILSS----RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           EL  L  E  E   +L S    R R++  I+Q+      E   PRRT I E       E 
Sbjct: 467 ELAKLRDEQAELDVLLKSETMMRRRIIKEIEQDAKQYSPEDKDPRRTLIQEA-SRAAAEV 525

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            ++ E + V VS  G+V        R ++  G   S    +  D +   F   T  ++L 
Sbjct: 526 KVIDEPVTVIVSGKGWV--------RTRQGHGHDASQFTFKAGDNLYGTFECRTIDTLLA 577

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G VY   V  LP G  +  G  +  ++ L  G +I          +      ++ A
Sbjct: 578 FGSNGRVYSVAVSGLPGG--RGDGVPVTTLIDLAAGTQIAHTF------AGAAEQRMLIA 629

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV----ETCTQ 692
           T  GN    K+ D I   ++GK  + LD  D +L+     E CT 
Sbjct: 630 TAGGNGFVTKVGDMIGRQKAGKAFVTLDEGDTLLAPTPIGEECTH 674


>gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
 gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
          Length = 787

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 242/698 (34%), Positives = 371/698 (53%), Gaps = 69/698 (9%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW--------------- 67
           + +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  + +E                
Sbjct: 43  EALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASADVLTANPARN 102

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
              Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+SLR  L++GQGNFG++DGD  AA
Sbjct: 103 TTAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAA 162

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL +AA  L+  L + TVDFRP Y+G  +EP V    +PN+L NG  GIAVGMA
Sbjct: 163 MRYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVFPGLFPNLLANGASGIAVGMA 222

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T+IP HN+ E++D    +ID+PD D  ALM+I+RGPDFPTG V++     I  AYATGRG
Sbjct: 223 TSIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDFPTGGVLVDSPSIIAEAYATGRG 282

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +   R   H E         VVTEIPYQV K+ ++E+IA L+ +K++  +AD+RDESD  
Sbjct: 283 AFRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQIAALINDKKLPILADVRDESDAD 342

Query: 307 GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAF 364
             R+VIE + R     V+++ L+R T L++ F +N+  L+  + P    L  +L  ++  
Sbjct: 343 -IRIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVLDSTHTPRVLGLKPLLVEWLRH 401

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+VRR ++ L+K   R  +L G  IA  NLD V+ IIR    P    +E+M   +  
Sbjct: 402 QIDVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEIIRTEDEP----KEVMMVEFG- 456

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q  AIL +RL  L  L   ++R E + L  E 
Sbjct: 457 ------------------------LTDRQAEAILNMRLRSLRKLEEMELRREHDELLKER 492

Query: 485 KECLDILSSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMED---EDCIVRED 537
            E   ++ S +R    +K++L +++     E D  RR  +VE      +   E  I RE 
Sbjct: 493 DELEKLVESPARQRTRLKKDLAALRKRYGPETDLGRRRTLVEEAAPAREIPLEAMIEREP 552

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+++ +      +  R       +  ++ D     F   T   +L  +S G 
Sbjct: 553 ITVILSERGWIRAM------SGHRDLAAADTLKFKEGDGPQFAFHAYTTDKLLLATSTGR 606

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V+     +LP G  +  G  + +++ ++    I  +MP      +  +L +  +   G +
Sbjct: 607 VFTLSSDKLPGG--RGFGDPVRSLVDMDNEGAIVALMP----ARAGGDLLLASSDGRGFI 660

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
               ++D +   R GK  + + +   +  V   T + D
Sbjct: 661 --AAMADIMAETRKGKQVVNVRAGARLAVVHPVTADAD 696


>gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
 gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
          Length = 758

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 248/734 (33%), Positives = 391/734 (53%), Gaps = 72/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 22  EQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALSKHKKSARTVGDVLGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + +  LL
Sbjct: 82  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEARLSRFSELLL 140

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TV++ PN+DG+ +EPVVL AR P++L+NG  GIAVGMAT+IP HN  EV   C 
Sbjct: 141 SELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIAVGMATDIPPHNAREVAYACA 200

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNP+  LD LM+ I+GPD+PT A +I  R  I+  Y TG+GSI  R V   E   GD
Sbjct: 201 ELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDIRKIYETGKGSIKQRAVWSEE--DGD 258

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              IV+T +P+Q + A ++E+IA  +  K++  + DLRDESD +    ++ + R    DV
Sbjct: 259 ---IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDESDHENPTRLVIVPRSNRVDV 315

Query: 323 --ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  L+  T L+  + VN+  L    +P+   L  IL  ++ FR E V RR ++ L+K
Sbjct: 316 EGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCLKTILSEWIQFRRETVRRRLQFRLDK 375

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL IA  N+DEV+ IIR    P     ++M   +N                
Sbjct: 376 VLARLHILEGLLIAYLNIDEVIEIIRTEDEPG----KVMVERFN---------------- 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++E Q  AILEL+L  L  L    +R E N L  E  +   IL S  RL  
Sbjct: 416 ---------ITETQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLNT 466

Query: 500 IIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           ++K+ELL+  ++    RRT +VE    + + +++ I  E + V +S  G+V         
Sbjct: 467 LLKKELLADAEKYGDDRRTPLVERATAVALTEKELIPSEPVTVILSDKGWV--------- 517

Query: 558 AQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG     +G+  +  D         ++   +F S+LG  Y  +   LP  S ++
Sbjct: 518 ---RAAKGHDVDVAGLSYKAGDSYLAHACGRSNQQAVFLSTLGRTYALESHTLP--SARS 572

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L    +L  GE +  ++   E E        + A+  G        D I  N++GK
Sbjct: 573 QGEPLTGRFALGAGEEVRHLVMGNEGEP------YLIASDAGYGFVCTYDDLIGKNKNGK 626

Query: 674 IAMKLDSRDEILSVETC-TQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
             + +    ++++ +   + E D+ +  +  G+ + FP++ + V     G   + +    
Sbjct: 627 ALLTVPEGGQVMAPQKIGSPETDLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSAR 686

Query: 729 LAKGDQVISMAIVL 742
           +   ++ + MA V+
Sbjct: 687 VKAREEFVVMAAVI 700


>gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 764

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 250/728 (34%), Positives = 392/728 (53%), Gaps = 82/728 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 22  EQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALSKHKKSARTVGDVLGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + +  LL
Sbjct: 82  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEARLSRFSELLL 140

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ +EPVVL AR P++L+NG  GIAVGMAT+IP HN  EV   C 
Sbjct: 141 SELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNGITGIAVGMATDIPPHNAREVAYACA 200

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNP+  LDALM  I+GPD+PT A +I  R  I+  Y TG+GSI  R V + E   GD
Sbjct: 201 ELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDIRKIYETGKGSIKQRAVWNEE--DGD 258

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              IV+T +P+Q + A ++E+IA  +  K++  + DLRDESD +    ++ + R    D+
Sbjct: 259 ---IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDESDHENPTRLVIIPRSNRVDM 315

Query: 323 --ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  L+  T L+  + VN+  L    +P+  TL  IL  ++ FR E V RR +Y L+K
Sbjct: 316 EALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTLKMILSEWIIFRRETVRRRLQYRLDK 375

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL +A  N+DEV+ IIR    P     ++M   +N                
Sbjct: 376 VLARLHILEGLLVAYLNIDEVIEIIRTEDEPG----KVMVERFN---------------- 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +SE Q  AILEL+L  L  L    +R E + L IE  +   +L S  RL  
Sbjct: 416 ---------ISETQAEAILELKLRHLAKLEEFKLRAEQDELAIERDKLELLLGSERRLNT 466

Query: 500 IIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           ++K+ELL+  ++    RRT +VE    + + +++    E + V +S  G+V         
Sbjct: 467 LLKKELLADAEKYGDDRRTPLVERASAVALTEKELTPSEPVTVILSDKGWV--------- 517

Query: 558 AQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG     +G+  +  D         ++   +F S+LG  Y  +   LP  S ++
Sbjct: 518 ---RAAKGHDVDVAGLSYKAGDGYLAHACGRSNQQAVFLSTLGRTYALEAHTLP--SARS 572

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSDFIQINRSG 672
           +G+ L    +L  GE +  ++   E E      Y++ +   +G V      D I  N++G
Sbjct: 573 QGEPLTGRFALGAGEEVRHLVMGNEGEP-----YLICSDAGYGFV--CTYDDLIGKNKNG 625

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  + +     +++ +   + E D+ +  +  G+ + FP++ + V               
Sbjct: 626 KALLTVPEGGLVMAPQKIGSPETDLCMAISNEGRMLLFPLNTLPVLGK-----------G 674

Query: 731 KGDQVISM 738
           KG+++IS+
Sbjct: 675 KGNKLISI 682


>gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 750

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 252/762 (33%), Positives = 396/762 (51%), Gaps = 92/762 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT+IP HN+ EV    + +IDNP  +L  +ME ++GPD+PT A +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E       +I++T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWKKEGP-----EIIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R      D ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  
Sbjct: 296 HENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDN-RPQVKGLVQILAE 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ +R   V RR +Y L+K   R HVL GL +A  NLDEV+ IIR   N +  + ELM R
Sbjct: 355 WIEYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIR---NEDEPKAELMSR 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E+Q  AIL+ +L  L  L    IR E   L
Sbjct: 412 --------------------------FGLTEIQADAILDTKLRHLAKLEEMKIRGEQEEL 445

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDM 538
             E K+   +L S  RL  ++K+E+ +  ++    RR+ ++  E    + + D +  E +
Sbjct: 446 EKERKKLETLLGSERRLNTLLKKEIEADAEKYGDDRRSPLIEREEAKALTERDLVPSEPI 505

Query: 539 VVTVSHLGYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
            V +S  G+V+        P ++       Y A  RG                      +
Sbjct: 506 TVVLSDKGWVRHAKGHELDPATLNYKSGDKYLAHARG---------------------KS 544

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              V+   S G  Y  +   LP  S +++G+ +   L+++ G  I  ++   E+E  W  
Sbjct: 545 SQPVVLLGSDGRSYSLESHSLP--SARSQGEPITGRLNISSGSNIRHLV-MGEEEQLW-- 599

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLG 703
              +  +  G     K SD +  ++SGK  + L    E+L          ++IL  T  G
Sbjct: 600 ---LVGSDAGYGFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSDEILAVTNQG 656

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKG---DQVISMAIVL 742
           + + FPI  +          +  I  AK    D+ +S  I L
Sbjct: 657 RMLLFPIKDLPQLGKGKGNKIINIPAAKAKSRDEFVSHLIAL 698


>gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-12]
          Length = 742

 Score =  366 bits (940), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 226/630 (35%), Positives = 347/630 (55%), Gaps = 51/630 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KCA
Sbjct: 16  IEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKCA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+A++Y+AL R+AQD++ R  L+EGQGNFGSVDGD PAA RYTE RL
Sbjct: 76  RVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD +  D VDFRP YDG  QEPVVL + +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 136 TEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHNA 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
            EV      ++  P      L+E++ GPDFPTG +I+  +  I  AY TGRGS  +R   
Sbjct: 196 AEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRARW 255

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+       IVVT+IPYQV K+ ++E+IA+L+ +K++  + D+RDES  +  R+V+E 
Sbjct: 256 EVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDE-IRLVLEP 314

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K RG   +V++  L+R T L+S F +NM  L   + P    L  +++A++  R EV+ RR
Sbjct: 315 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLDHRHEVLERR 374

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLD+V+RIIR                           
Sbjct: 375 SRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREE------------------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             DD+  ++ +  T  L+++Q  ++L +RL  L  L   +IR E ++L  E    + +L 
Sbjct: 410 --DDAKASLIA--TFKLTDLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEKAALMALLD 465

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +    I++EL  +       R           E    I+     V +S +  V+R P
Sbjct: 466 SEKQRWKTIERELTGMIKAFGKGRLG---------ERRSTILSAPKPVDISVVEEVEREP 516

Query: 553 LSVYRAQR---RGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           L++  +Q+   R  KG +        ++ D +       T   + FF++ G  Y  K   
Sbjct: 517 LTMILSQKGWVRAVKGHNVDLENQKFKEGDALKLAIPCQTTDRLCFFATDGRAYTVKGAD 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP 635
           LP G  +  G+ +  ++ L+  E +  + P
Sbjct: 577 LPRG--RGDGQPIRLLIDLSNDEDLLAVFP 604


>gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 750

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 409/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLNADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E ++GPDFPT A ++  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+S + V  N++ L+G +P+   L  +L  ++ +R  
Sbjct: 305 VIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDG-RPQVKNLRTLLSEWLTYRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR    P+     LM R       
Sbjct: 364 TVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPV---LMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    IR E + L  E +  
Sbjct: 414 -------------------FELSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
           L +L S ++L  ++++ELL   +     RR+ IVE      + + + +  E + V +S  
Sbjct: 455 LALLGSEAKLKKLVRKELLEDAETYGDDRRSPIVERAEARALTENELLPSEPVTVVISEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+             R  KG      G+  +  D         ++   +F  S G  Y  
Sbjct: 515 GWA------------RCAKGHDIDAGGLSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+DE+    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGRLTPPPGASFECVL-LPDDEA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +   +++     ++E+D L   T  G+ + FP+  +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGARVVAPRPLASREDDWLAAVTTEGRLLVFPVRDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ +    VL A A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYLVDLAVLPAGATL--------VLQAGKRTLSLKAEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15]
          Length = 769

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 264/748 (35%), Positives = 385/748 (51%), Gaps = 95/748 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY 
Sbjct: 8   DEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 68  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+I
Sbjct: 127 TESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ EV   C+ ++D P+  +D L E I+GPDFPT A +I  R  I+  Y TGRGS+ 
Sbjct: 187 PPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYETGRGSLR 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +   + SG   +IVVT++P+QV+   +LE+IA  ++ K++  +ADLRDESD +   
Sbjct: 247 MR--ARWIRESG---EIVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDESDHENPT 301

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFRE 366
            ++ + R    D+  ++  L+  T L+  + VN+ V  N  +P    L  IL  ++ FR 
Sbjct: 302 RLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILTEWLTFRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+    ELM R      
Sbjct: 362 TTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKA---ELMAR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS  Q  AILEL+L  L  L    IR E + L  E  E
Sbjct: 413 --------------------FGLSADQAEAILELKLRHLAKLEEMKIRGEQDELAAERDE 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK E+ +  +     RR+ IV  E      + D I  + + V +S 
Sbjct: 453 LQSILGSEDRLRELIKSEMQADAETFGDDRRSPIVEREEAKAFSEVDLISNDPVTVVLSE 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  +  D  +       +   +F  S G  Y 
Sbjct: 513 KGWV------------RAAKGHDIEPEGLSYKAGDRFSLAARGRNNQQTIFLDSTGRAYS 560

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV-------VFATK 653
                     P ARG          QGE +T  +  P   +S++ L +       +  T 
Sbjct: 561 LMAHSF----PSARG----------QGEPLTGRI-NPPSGASFSGLLMGDPSRKALLVTD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILL--TTKLGQCVRFPI 710
            G      L+D I  NR+GK  + +     I+   T  T E  + L   +  G+ + FP+
Sbjct: 606 GGYGFVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKTLYLGAVSNEGRMLVFPL 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISM 738
           S +   A             KG+++IS+
Sbjct: 666 SELPELAK-----------GKGNKIISI 682


>gi|193216449|ref|YP_001999691.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193001772|gb|ACF06987.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 949

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 236/728 (32%), Positives = 379/728 (52%), Gaps = 49/728 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ D M   +  Y+  +I  RAIPD RDGLKPV RRIL+ M  + +  N+ + K A
Sbjct: 16  IIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG+YHPHG+++IY+AL RM+Q+W     LIE  GN GS+D DP AA RYTE RL
Sbjct: 76  KIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAMRYTESRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +  +L DL +  V   PN+D +  EPVVL +  PN+L+NG  GIA G AT IP HNL
Sbjct: 136 EKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I NP I L+ L +I++GPDFPTG VI G  GI  A+ TG+G I I     
Sbjct: 196 SEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQAFETGQGKINISSRYR 255

Query: 256 IEKTSGDREQIV---VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                    +I+   + E P+ V K+ ++  I  LV +K I  + ++RD+S+R+G  + +
Sbjct: 256 FVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGISIYL 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+  A+A+ I+N L   T L+  ++ NMVA++   P+   L  +L  +++  +++  + 
Sbjct: 316 ELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLLFTYLSHLKDINTKG 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K   R  ++ G        DEV+R+I+ S N +    E +++++  ++I     
Sbjct: 376 IEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNI----- 430

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                               Q  AI ELRL +L+ + + + +NE   L I+I  C ++L 
Sbjct: 431 --------------------QATAIAELRLYKLSKMDQLEFQNEAKELAIKIARCKELLE 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVKR 550
           + +     I ++L  +K E   PR + I +  +  E    ++   ED    +S  GY+KR
Sbjct: 471 NPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRTEINTKLLAKNEDFYFFLSKEGYIKR 530

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + +      G SG  ++D D +     +++ + ++FF++LG  +      L    
Sbjct: 531 ISKKAFSSN-----GFSGFKLKDNDAIFYYDKINSLSKLIFFTNLGNYFIIDAHTLKENG 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQI 668
            +  G  + ++++L   ERI  +M   E ES       +  TK G  ++ ++ +F   QI
Sbjct: 586 WKDIGNHISSLVALENNERIIRVM---EIESFNTYSRFIILTKKGMAKKVEIQEFDSKQI 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R  +  + L   DE+  V    +E    ILLT  L   +   +          S+   G
Sbjct: 643 ARK-RSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDENV------VPEYSLKASG 695

Query: 727 ISLAKGDQ 734
           ISL K D+
Sbjct: 696 ISLIKTDR 703


>gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594]
 gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594]
          Length = 769

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 209/556 (37%), Positives = 323/556 (58%), Gaps = 51/556 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I        ++  YL YA++ I  R++PDLRDGLKPVHRR+L+ M Q+ ++    + K A
Sbjct: 16  IVDAPFDSALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPTNTFKKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A YDA+ R+AQD++LR  L+EGQGNFG++DGD  AA RYTE RL
Sbjct: 76  RVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  L+  L + TVDF P Y+G  +EP ++   +PN+L NG  GIAVGMATNIP+HN+
Sbjct: 136 TRTAMALMAGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGASGIAVGMATNIPSHNV 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVS 254
            E++D  + +IDNP ++   LME+ +GPD PTG +I+     I NAY TGRGS  IRG  
Sbjct: 196 HEIIDATLELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISNAYETGRGSFRIRGRF 255

Query: 255 H-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           H             IE+  G + Q+V++EIPYQV K  ++E+IA+ + +K++  + D+RD
Sbjct: 256 HAAEAEKQADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQAIADKKLPILDDVRD 315

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKA 360
           ESD Q   V++   R    +++   +Y+ T +++ F +N+  L+  + P    L  +L+ 
Sbjct: 316 ESDEQIRIVLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDATRTPMVMGLKELLEN 375

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + E++ RRT++ L++   R  ++ G  IA  NLD V+ IIR+   P    +++M  
Sbjct: 376 WVRSQIEILQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIRYEDEP----KQVMMA 431

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            ++                         L++ Q  AIL +RL  L  L   +++ E   L
Sbjct: 432 EFS-------------------------LTDRQAEAILNMRLRSLRKLEEMELKQEKTDL 466

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDE--LDT---PRRTRIVEG--LLDMEDEDCI 533
             E +E   +L S +R    +K++L +++ E  LDT    RRT I E    ++   +  I
Sbjct: 467 LAEQEELEKLLGSPARQRTRLKRDLKALQKEYGLDTELGARRTTIAEAEPTVEFSMDAMI 526

Query: 534 VREDMVVTVSHLGYVK 549
            +E + V +S  G+V+
Sbjct: 527 EKEPVTVVLSQKGWVR 542


>gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
 gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
          Length = 753

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 245/720 (34%), Positives = 373/720 (51%), Gaps = 64/720 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 10  IQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE ++
Sbjct: 70  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTEAKM 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D VDFRP Y+   +EP VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 130 TEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMATSIPPHNA 189

Query: 196 GEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
            E+ D  + +I +P   L+ L+          I GPDFPTG +I+  R  +  +Y TGRG
Sbjct: 190 HELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASMLESYRTGRG 249

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES   
Sbjct: 250 GFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 309

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V++   R   A++++  L++ T L+S   +NM  L+ G  P    L  +L  ++A R
Sbjct: 310 VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWLAHR 369

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RR+++ L     R  +L G  +A  N+DEV+RIIR    P+     +++R     
Sbjct: 370 REVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPKAM---MIER----- 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++VQ  AIL +RL  L  L   +IR E ++L  E  
Sbjct: 422 ---------------------FALTDVQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKA 460

Query: 486 ECLDILSSRSRLLGIIKQELLSVKD------ELDTPRRTRIVEGLLDME--DEDCIVRED 537
           E   +L+S  +    +  E+  VK       EL   R T       D+E   +  I +E 
Sbjct: 461 EIEALLASDDKQWQAVAWEIGEVKKKFAKATELGKRRSTFADAPDADIEAIQQAMIEKEP 520

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +      S +  +D D +   F   T   +L F++ G 
Sbjct: 521 ITVVISEKGWI--------RALKGHISDTSALQFKDGDALKVAFPAQTTDKILVFTTGGK 572

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY     +LP G  +  G+ L  ++ +   + + T +           L V  A  +G V
Sbjct: 573 VYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTALV----HDPARKLIVSSAAGNGFV 626

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                SD +   R GK  M +   DE   V   T+ + + +     + + FP++ I   A
Sbjct: 627 VTE--SDIVANTRKGKQVMNVVMPDEAKLV-VPTKGDHVAVVGDNRKMLVFPLAQIPEMA 683


>gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146]
 gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 760

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 250/734 (34%), Positives = 383/734 (52%), Gaps = 73/734 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  EDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSRYAEILL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN  EV    V
Sbjct: 138 SELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALV 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A++DNP   LD L+  I+GPDFPT A +I  R  I   Y TGRGS+ +R V   E+    
Sbjct: 198 ALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIHKIYRTGRGSVRMRAVWRKEEG--- 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV++ +P+Q + A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 255 --EIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHENPTRLVIVPRSNRVDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+  +P    L  IL  ++++R E V RR  Y L 
Sbjct: 313 DQLMNHLFATTDLEKSYRINMNMIGLD-RRPAVKDLREILSEWLSYRRETVRRRLNYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL  A  N+DEV+ IIR    P+     L+ R                  
Sbjct: 372 KVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPKPV---LVAR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q  AILEL+L  L  L    IR E + L  E      +L+S  +L 
Sbjct: 411 --------FGLSDTQAEAILELKLRHLARLEEVKIRGEQDELAQERDRLQTLLASERKLG 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+++  +     RR+ + E      M + D +  E + + +S  G+V        
Sbjct: 463 TLIKKEIMADAETYGDARRSPLQERSEARAMSEHDFVPNEPVTIVLSEGGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D         ++  V+F  S G  Y      LP  S +
Sbjct: 515 ----RSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ L   L+   G  I  ++   +D+       ++ A+  G       SD +  NR+G
Sbjct: 569 GQGEPLTGKLTPPPGATIEHVLMAADDQK------LLMASDAGYGFVCTFSDLVARNRAG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGIS 728
           K  + L     +L+      ++D+LL  T+ G+ + FP+  +   +   G   V +    
Sbjct: 623 KAMLTLPENANVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQ 682

Query: 729 LAKGDQVISMAIVL 742
            A G+  +   +VL
Sbjct: 683 AAAGEDTLKWLLVL 696


>gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
 gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
          Length = 747

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 389/738 (52%), Gaps = 79/738 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +   +K  G   +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RAI--WKKEDG---EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISENDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V     
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV----- 666

Query: 721 SVGVRGISLAKGDQVISM 738
                 +S  KG+++I++
Sbjct: 667 ------LSKGKGNKMITI 678


>gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
 gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
          Length = 768

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 247/648 (38%), Positives = 352/648 (54%), Gaps = 63/648 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV +      +YL YA +V+ GRA+PD+ DG KPV RRIL+ M +MG+    K VK AR+
Sbjct: 17  SVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAMDRMGLRAGVKPVKSARV 76

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 77  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLSP 136

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+LG+ TV+F PNYDG   EP +L AR P +L+NG  GIAVGMAT IP+HNLGE
Sbjct: 137 IAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGASGIAVGMATEIPSHNLGE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGVSHI 256
           V + C+A+I NP+I  D L +I+ GPD+ +GA I+ +  + K  Y TG+G++ +R     
Sbjct: 197 VANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQIYETGKGTVKVRARWEF 256

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 257 EELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSLNSEQQNTKSMMLGLLDA 316

Query: 299 LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDES R+   R+V E K      +  +N L  +TS++   S+N+V +    KP +  L 
Sbjct: 317 VRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSINLVCIGIDGKPRQRNLK 376

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR E V+ RTKY L +  DR HVL G  I + N+DEV+  IR S  P+ A  
Sbjct: 377 EILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVDEVISTIRNSDEPKPA-- 434

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+  +             LS+ Q   ILE++L +L  L    I+ 
Sbjct: 435 --------------LIEKFN-------------LSDRQAEDILEMKLRQLAKLEGIKIQQ 467

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL    +E K+  ++L+S S L   I +E+ S   +    RRT +++       E  +V 
Sbjct: 468 ELEDKRLEQKKLENLLNSNSSLKKQIIKEIESDAKKYADARRT-LIKHAEKATLEVKVVD 526

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA++  G   S +  +  D +   F V T  +++   S 
Sbjct: 527 EPVTVIISDKGWV--------RARQGHGVEESALNFKSGDSLYGTFEVRTVDNLIGIGSN 578

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           G VY   V  LP  S +  G+    ++ L    +I+  +   ED S W
Sbjct: 579 GRVYTVPVSSLP--SARGDGQPYSAMIDLESKTQISHYVCAKED-SVW 623


>gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a]
 gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas
           maltophilia K279a]
          Length = 747

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 358/681 (52%), Gaps = 61/681 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E ++GPD+P+ A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYETGNGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              + E  +     IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 250 ATFNKEANN-----IVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R     AD ++  L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR  
Sbjct: 305 VLVPRSNRVDADQLMGHLFATTDLERSYRVNLNVIGLDG-RPQVKNLKMLLSEWLTFRSN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A   L+ R       
Sbjct: 364 TVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E + L  E ++ 
Sbjct: 414 -------------------FGLSEEQAEYILETKLKQLARLEEMKIRGEQDELAKEREKI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L IL S+++L  +I+ EL +   +    RR+ +V  +    +++ + +  E M V +S  
Sbjct: 455 LGILDSKAKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      S +  RD D +       +   V F  S G  Y   V  
Sbjct: 515 GWI--------RAAKGHDVDASALSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L    S   G    T+       S+  +   V A+ HG     +  + 
Sbjct: 567 LP--SARGNGEPLTGRFSPAAGTSFVTLA------SAEPDARFVLASSHGYGFVTRFENL 618

Query: 666 IQINRSGKIAMKLDSRDEILS 686
           I  N++GK  + L S   +L+
Sbjct: 619 IGRNKAGKAMLNLSSGSSVLT 639


>gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 751

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 412/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +LSS S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLSSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv.
           syringae B728a]
          Length = 751

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 412/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +LSS S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|319826936|gb|ADV74762.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 279

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 167/279 (59%), Positives = 223/279 (79%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GN
Sbjct: 1   LYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LV
Sbjct: 61  FGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLV 120

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+G
Sbjct: 121 NGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSG 180

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I
Sbjct: 181 IRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGI 240

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
            DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 TDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 279


>gi|26554099|ref|NP_758033.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
 gi|26454107|dbj|BAC44437.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
          Length = 1481

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 236/723 (32%), Positives = 388/723 (53%), Gaps = 45/723 (6%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ D M  S+  YA  +I  RA+PD+RDGLKPV RRIL  M ++ +  +K Y K AR  G
Sbjct: 12  SLDDIMSESFGKYAKYIIQDRALPDVRDGLKPVQRRILHAMNELKIHHDKPYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+++IY+A+ RM+Q+W   L L++ QGN GS+DGD PAA RYTECRL K  
Sbjct: 72  EVIGKYHPHGDSSIYEAMVRMSQEWKNNLPLLDMQGNKGSIDGDSPAAMRYTECRLSKFG 131

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ K+TV F  N+D S QEP VL +  PN+L+NG  GIA G ATNIP  N  EV+
Sbjct: 132 QTILKDIDKNTVKFINNFDDSEQEPTVLPSLLPNILINGATGIAAGYATNIPPFNPSEVI 191

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-- 257
           DG +  I  P+  L  L +II+GPDFPTG +I G+  I+  Y TG+G   IR     E  
Sbjct: 192 DGTIYRILRPESSLAELAKIIKGPDFPTGGIIQGKEFIQEIYKTGKGKFFIRAKIEEEPT 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K++ + ++++V EIPY  NK+A+++ + E+     +    ++RD+SD+ G  +V+E    
Sbjct: 252 KSTKNVKRLIVKEIPYDTNKSAIVKSLDEIKYNNELPGFKEVRDDSDKNGISIVLEFDTE 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++I   LY+ T LQ  ++ NMV +   KP +  L+ IL +F+     VV++  +Y L
Sbjct: 312 KDLEIIKTFLYKKTQLQISYNANMVLIKDRKPVQAGLLEILDSFIEHANNVVIKAAQYDL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            K+  R  ++ GL  A++ +D +V +I+ S + E A+ ++                    
Sbjct: 372 EKSLLRKEIIEGLIKAISEIDVLVNLIKSSVSKEEAKLKIQDY----------------- 414

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      ++E Q+ AI+ LRL  LT    + ++ E   L   IKE   I++S    
Sbjct: 415 ---------FKVNERQSEAIVNLRLYVLTSFDTEKLKKEYEELLEFIKEKELIINSVPYR 465

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV-PLS 554
              I   L + K      RR+ I   + ++E E  D +   +    V+   Y+K +  +S
Sbjct: 466 NKFIVSILENHKKSFGYKRRSLIENEVEELEIETVDIVEERNGTCIVTRDNYIKFIDDVS 525

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +        K      ++D D   D+F +ST   ++  ++ G +     +++ +   +  
Sbjct: 526 IEELDLSKAK------IKDADIPVDIFRLSTLDHLVCLTNRGKMITIPAYKIKMTKLKDN 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +  +++++  E+  TI+ F   + S  N  ++ ATK+  ++R  L D I ++++ K 
Sbjct: 580 GVHINELITIDSFEK--TILAFGVSKYSDINTEILVATKNSLIKRISLED-INLSKNAKS 636

Query: 675 AMKLDSR---DEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +  +  +   D+++S     +E ++++  T+ G   R+ I  I +  GR + GV+ +SL 
Sbjct: 637 STYVSLKGGNDDVVSAYILKKEYSEVVSVTQNGYATRYKIDEIPL-VGRTAAGVKNMSLK 695

Query: 731 KGD 733
             D
Sbjct: 696 DKD 698


>gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 750

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 252/720 (35%), Positives = 385/720 (53%), Gaps = 83/720 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  +++YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +LD+LG+ TVDF PN+DG+ QEP+ L AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNGTSGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL EV   C+ +ID P   L+ L+E ++ PD+PT A I+     +   Y+TGRGSI +R
Sbjct: 190 HNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADLHKVYSTGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V ++E   GD   +V+T +P+QV+ A +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYNVE--DGD---VVITGLPHQVSGAKVLEQIAAQMQAKKLPMVTDLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   +++ L+  T L+S + VNM  + L+G +P+   L  +L  ++ +R  
Sbjct: 305 VIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDG-RPQVKDLRTMLSEWLQYRIT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P  A   LM R       
Sbjct: 364 TVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVA---LMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE RL +L  L    IR E   L  E +  
Sbjct: 414 -------------------FELSEAQADYILETRLRQLARLEEMKIRGEQEELLRERETL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
              L S ++L G++++E+++  D     RR+ +VE      + + + +  E + V +S  
Sbjct: 455 AGYLGSETQLKGLVREEIMADADYYGDDRRSPLVERAEAKALSESELMPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT------DLFIVS----THTSVLFFSSL 595
           G+V            R GKG       D D  T      D F  S    ++   +F  S 
Sbjct: 515 GWV------------RAGKG------SDVDGSTLSYKAGDTFKTSASGRSNQFAVFIDST 556

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +      L   S + +G+ L   L+   G     ++  P+DE+    LY V A+  G
Sbjct: 557 GRSFSLAAHTL--ASARTQGEPLSGKLTGQPGASYEWVV-MPDDEA----LY-VLASDAG 608

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAI 713
                K  D    N++GK  + L    ++L     +  ++  I+  T  G+ + F  S +
Sbjct: 609 YGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADEQWIVALTSEGRLLMFKASEL 668


>gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 751

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 412/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +LSS S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
 gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
          Length = 773

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 262/746 (35%), Positives = 391/746 (52%), Gaps = 76/746 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           SSD  + + +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+ 
Sbjct: 11  SSDAPDAEALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLG 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  A
Sbjct: 68  PDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+
Sbjct: 128 AMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGL 187

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT IP+HNL EV    V +I NP +    LM +I GPDFP G  I+   T I  AY TGR
Sbjct: 188 ATEIPSHNLREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGR 247

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---------------- 289
           GS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                  
Sbjct: 248 GSLKVRARWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLN 307

Query: 290 -EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN 345
            +K ++D+ D +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V + 
Sbjct: 308 TKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIG 367

Query: 346 G-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RII
Sbjct: 368 ADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRII 427

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S  P++A   LM                              LSE Q   ILE+RL +
Sbjct: 428 RESDEPKSA---LMS--------------------------AFGLSERQAEDILEIRLRQ 458

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++  
Sbjct: 459 LARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQE 517

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                E  +V E + V VS  G+V        RA +  G   +    +  D +   F   
Sbjct: 518 KRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDHLYAAFQCR 569

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P D+    
Sbjct: 570 TPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAPADQQ--- 624

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLG 703
              ++ A+ +G     K+ D +   ++GK  M +D+    L+ +        +   +  G
Sbjct: 625 ---LLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQVACLSSGG 681

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL 729
           + + F +  ++  +G    G RG+ L
Sbjct: 682 RLLVFGMDEMKTLSG----GGRGVIL 703


>gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
 gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
          Length = 749

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/675 (34%), Positives = 369/675 (54%), Gaps = 69/675 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GK+
Sbjct: 21  EKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVGDVLGKF 80

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA RYTE RL + AH LL
Sbjct: 81  HPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQD-DPKSFAAMRYTESRLTRYAHALL 139

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L   TVD+ PN+D + +EP  L AR PN+L+NG  GIAVGMAT+IP+HNL EVV+ C+
Sbjct: 140 TELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEVVNACI 199

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++D P+  L  L  +I+GPDFP+ A +I  R+ +   Y  G G I  R +   EK    
Sbjct: 200 RLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIYREEKN--- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA--SA 320
             QI++T +PYQV+ A ++E+IAE +R+K++  I DLRDESD +    ++ + R +    
Sbjct: 257 --QIIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRSSRVDT 314

Query: 321 DVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           D +++ L+  T L+  +  ++NM+ L+G +P+   L  IL+ ++ +R+  V +R ++ LN
Sbjct: 315 DALMDHLFATTDLERSYRINLNMIGLDG-RPQVKNLRAILQEWLEYRQTTVKKRLEFHLN 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L G  I   +LDEV+ +IR   +P+T   +LM+                   
Sbjct: 374 KILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKT---QLMRH------------------ 412

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS++Q  AILE+RL +L  L    +R E  SL  E      ILSS+++L 
Sbjct: 413 --------YKLSDIQADAILEIRLRQLAKLEEIKLRAEQKSLIAERDNLQKILSSKTQLK 464

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +I+ EL          RR+  VE      ++  + I  E M V +S  G++        
Sbjct: 465 RLIRSELQEDAKRYGDLRRSPFVERRAAQALQKTEIISSEPMTVILSTRGWI-------- 516

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     SG+  +  D +    +  ++  ++   S G  Y   +  LP  S +
Sbjct: 517 ----RAAKGHDFDVSGLSFKAGDALKSTVLGRSNQLLVLMDSTGRSYSTPLHSLP--SAR 570

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + G+ L +  +   G +  +++    D++      +V ++  G     +LS+    NR+G
Sbjct: 571 SSGEPLTSRFNPPPGVQFESMISGNPDQA------IVVSSDAGYGFITQLSEMYSKNRNG 624

Query: 673 KIAMKLDSRDEILSV 687
           K  +KL +   +L +
Sbjct: 625 KSLLKLSAHAHVLPL 639


>gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I]
          Length = 771

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 373/725 (51%), Gaps = 71/725 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+
Sbjct: 20  AITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARV 79

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFGS DGD  AA RYTE RL  
Sbjct: 80  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTP 139

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 140 FSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLRE 199

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V   CVA+I NP +  + L+ ++ GPDF  G  +I     I   YATGRGS+  R     
Sbjct: 200 VAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQF 259

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I E+   K                  ++ + D 
Sbjct: 260 EEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDA 319

Query: 299 LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           +RDES +    R+V E K      D  +N L   TS++S   VN+V +    +P + +L 
Sbjct: 320 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLR 379

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N+DEV++ IR +  P  A  
Sbjct: 380 DVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAA-- 437

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            L+E Q   ILE+RL +L  L    I  
Sbjct: 438 -LMAR--------------------------FGLTERQAEDILEMRLRQLARLEGIKIEQ 470

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL     E     D+L +   L  ++ +E+     +    RRT ++E       E  +V 
Sbjct: 471 ELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRT-LIETAERAVLETKVVD 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G++        RA++  G        +  D +   F   T  +++     
Sbjct: 530 EPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLIAVGDN 581

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKH 654
           G VY   V  LP  S +  G+ +  ++ L  G RI  TI   P  +S W     + AT+ 
Sbjct: 582 GRVYSVAVSGLP--SARGDGQPVTTMIDLEAGTRIVHTIAAAP--DSRW-----LLATRR 632

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAI 713
           G     +LSD     R+GK  + L+  DE+L  V        + L +  G+ + F +  +
Sbjct: 633 GFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFDLDEV 692

Query: 714 RVFAG 718
           +  +G
Sbjct: 693 KSLSG 697


>gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
 gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
          Length = 748

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/708 (33%), Positives = 383/708 (54%), Gaps = 62/708 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TV+++ N+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV +  + ++DNP+ DLD LM  ++GPDFPT A +I  +  I+  Y  GRGSI +
Sbjct: 187 PHNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--Y 308
           R V   +K +G   +I++T +P+Q + + ++ +IAE ++ K++  + D+RDE+D +    
Sbjct: 247 RAV--WKKENG---EIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIR 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
            V++        D ++  L+  T L+  + V  NM+ L+  KP    L+ IL  ++ FR 
Sbjct: 302 LVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDN-KPAVKNLVQILTEWLTFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y L+K   R H+L GL IA  N+DE++ IIR    P    +E++   +N   
Sbjct: 361 QTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKP----KEILIARFN--- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++ Q  AIL LRL  L  L   +++ E N+L  E   
Sbjct: 414 ----------------------LTDEQAEAILNLRLRHLAKLEEQELQAEKNNLAKERNS 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL+S  RL  +IK+E+        +PR + +VE      + + D    E + + +S 
Sbjct: 452 LEQILNSEIRLNNLIKKEIQQDAKTFASPRLSPLVERAEAKAISETDMTPSEPITIILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G+V+        A+      R+      ++++T      ++  V+F  S G  Y     
Sbjct: 512 MGWVR-------CAKGHDINARALSYKTGDNYLTHA-CGKSNQPVVFIDSTGRSYTLDPL 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S +++G+ L   L+L  G  I  ++   E++S      ++ A+  G     K  D
Sbjct: 564 SLP--SARSQGEPLTGKLTLPSGATIEHLLIENENQS------LLMASDAGYGFICKFED 615

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
            +  N++GK  + L     +L          +L+  T + + + FP++
Sbjct: 616 LVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNRMLVFPVA 663


>gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
 gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
          Length = 774

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 250/683 (36%), Positives = 364/683 (53%), Gaps = 68/683 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ D  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 22  LTLGDYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVV 81

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 82  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 141

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF+EP +L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 142 AQLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFALLNGASGIAVGLATEIPSHNLREV 201

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +    LM+++ GPDFP G  I+     I  AY  GRGS+ +R    IE
Sbjct: 202 AAAAVALIRNPKLTHADLMQLVPGPDFPGGGQIISSDAEISAAYEVGRGSLKVRARWKIE 261

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-L 299
           + +  + Q+VV E+P   +   +LE+I EL                   +K ++D+ D +
Sbjct: 262 ELARGQWQLVVNELPPNTSCQKVLEEIEELTNPKIKAGKKTLTQEQANTKKTLLDLLDAV 321

Query: 300 RDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +    R+V E K R    +  +  L  +TSL+S   +N+V + N  +P +  L  
Sbjct: 322 RDESGKDAPVRLVFEPKSRALDQNEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGA 381

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 382 ILGEWVGFRQLTVTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA--- 438

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                              LSE Q   ILE+RL +L  L +  I  E
Sbjct: 439 LMS--------------------------AFGLSERQAEDILEIRLRQLARLEKIKIEKE 472

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  D+L++ S +  ++ +E+     +    RRT +++       E  ++ E
Sbjct: 473 LEELRAEKAKLEDLLANESAMKRLLIKEIEGDARQFGDDRRT-LIQQEKRATFEARVIDE 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 532 PVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSKG 583

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V+   V  LP G    RG   + + SL + E  T +M +    ++     ++ A+ +G 
Sbjct: 584 RVHSVPVQVLPGG----RGDG-VPVTSLIELESGTHLMHY---FAAGAEQPLLLASSNGF 635

Query: 657 VRRNKLSDFIQINRSGKIAMKLD 679
               K+ D I   ++GK  M +D
Sbjct: 636 GFIAKVGDMISRQKTGKAFMTID 658


>gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 751

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 411/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P+  +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E  +L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAIFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 773

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 256/735 (34%), Positives = 390/735 (53%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM +I GPDFP G  I+     I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEISAAYETGRGSLKVRAKWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V +R+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P++A  
Sbjct: 379 TILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKSA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              L+E Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLTERQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL++L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAGDGLYAAFQCRTPDRLIAWGSS 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P D+       ++ A+ +G
Sbjct: 581 GRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAPVDQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++
Sbjct: 633 FGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFAMDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG++L
Sbjct: 693 TLSG----GGRGVTL 703


>gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822]
 gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis]
          Length = 771

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 257/724 (35%), Positives = 371/724 (51%), Gaps = 69/724 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+
Sbjct: 20  AITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARV 79

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFGS DGD  AA RYTE RL  
Sbjct: 80  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTP 139

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 140 FSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLRE 199

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V   CVA+I NP +  + L+ ++ GPDF  G  +I     I   YATGRGS+  R     
Sbjct: 200 VAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQF 259

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I E+   K                  ++ + D 
Sbjct: 260 EEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDA 319

Query: 299 LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           +RDES +    R+V E K      D  +N L   TS++S   VN+V +    +P + +L 
Sbjct: 320 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLR 379

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N+DEV++ IR +  P  A  
Sbjct: 380 DVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAA-- 437

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            L+E Q   ILE+RL +L  L    I  
Sbjct: 438 -LMAR--------------------------FGLTERQAEDILEMRLRQLARLEGIKIEQ 470

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL     E     D+L +   L  ++ +E+     +    RRT ++E       E  +V 
Sbjct: 471 ELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRT-LIETAERAVLETKVVD 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G++        RA++  G        +  D +   F   T  +++     
Sbjct: 530 EPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLIAVGDN 581

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP  S +  G+ +  ++ L  G RI   +    D S W     + AT+ G
Sbjct: 582 GRVYSVAVSGLP--SARGDGQPVTTMIDLEAGTRIVHTIAAASD-SRW-----LLATRRG 633

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
                +LSD     R+GK  + L+  DE+L  V        + L +  G+ + F +  ++
Sbjct: 634 FGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFGLDEVK 693

Query: 715 VFAG 718
             +G
Sbjct: 694 SLSG 697


>gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047]
 gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047]
          Length = 747

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 387/738 (52%), Gaps = 79/738 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRA 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V     
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV----- 666

Query: 721 SVGVRGISLAKGDQVISM 738
                 +S  KG+++I++
Sbjct: 667 ------LSKGKGNKMITI 678


>gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 751

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 411/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E  +L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S  +E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKSEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
 gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
          Length = 760

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 240/731 (32%), Positives = 397/731 (54%), Gaps = 82/731 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+
Sbjct: 16  EDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAKYKKSARTVGDVLGKF 75

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE +L   +  LL
Sbjct: 76  HPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPD-DPKSFAAMRYTEAKLSHFSEVLL 134

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN  EV + C 
Sbjct: 135 SELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATDIPPHNAREVANACA 194

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +ID P  DLD +ME ++GPD+PT A +I  +  +K  Y +GRG+I +R   H+E+    
Sbjct: 195 LLIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTIKMRAKYHLEEN--- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +IV+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +    ++ + R    D 
Sbjct: 252 --EIVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENPTRLVVVPRSNRVDT 309

Query: 323 --ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++  L+  T L+  + VN+  + L+G +P+   L+GIL  ++ FR++ V RR +Y L+
Sbjct: 310 EQLMKHLFATTDLEKQYRVNLNILGLDG-RPQVKPLVGILGEWLEFRKQTVTRRLQYRLD 368

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L GL IA  N+DEV+ IIR+   P   ++EL++R                  
Sbjct: 369 KVEARLHILQGLLIAFLNIDEVIEIIRYEDEP---KKELIKR------------------ 407

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L++ Q  AILEL+L  L  L    ++ E   L  E ++   +L+S  RL 
Sbjct: 408 --------FALTDTQAEAILELKLRHLARLEEMKLKGEQEELEKEREKLSQLLNSDRRLK 459

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+E+L+  ++    RR+ +VE      + + +    E + V +S  G+V        
Sbjct: 460 TLIKKEILADAEKYGDERRSPLVERAEAKALSETELTPAEAVTVVLSAKGWV-------- 511

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG       +  +  D         ++  V+F  + G  Y  +   LP  S +
Sbjct: 512 ----RCAKGHDVDGEKLSYKSGDSFQAAAQGKSNLPVVFLDTSGRSYSCEAHSLP--SAR 565

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++G+ L    ++  GE +   +    DE      Y + ++  G     +  D +  N++G
Sbjct: 566 SQGEPLTGRFNMVAGEMVQHAL-MARDEQ-----YYLLSSDAGYGFVCQFKDLVSRNKNG 619

Query: 673 KIAMKLDSRDEIL-SVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  + L +  +++  VE   T +  +++ +  G+ + FPI+ +   A             
Sbjct: 620 KAILTLPTGAKVMPPVEVKDTAQAQVIVVSNEGRMLVFPIADLPQLAK-----------G 668

Query: 731 KGDQVISMAIV 741
           KG+++IS+  +
Sbjct: 669 KGNKMISIPTL 679


>gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7]
          Length = 751

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 259/788 (32%), Positives = 412/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +LSS S+L  +++ EL++  +     RR+ IV       + + + +  + + V +S  
Sbjct: 455 LALLSSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTQPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|311033952|gb|ADP55402.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 285

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/285 (59%), Positives = 224/285 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 1   MNDLGMSSDKVYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 181 AYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           RDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 241 RDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 285


>gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20]
 gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
 gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20]
 gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
          Length = 747

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 387/738 (52%), Gaps = 79/738 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +   PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V     
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV----- 666

Query: 721 SVGVRGISLAKGDQVISM 738
                 +S  KG+++I++
Sbjct: 667 ------LSKGKGNKMITI 678


>gi|13810763|gb|AAK40026.1|AF272016_1 DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 290

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 170/290 (58%), Positives = 226/290 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 1   MNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQELMEFIPGPDFPTAGQILGRSGIRK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 181 AYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           RDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL   +P
Sbjct: 241 RDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEP 290


>gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
 gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 767

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 238/714 (33%), Positives = 379/714 (53%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+ PN+DG+ +EPV L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  C+ +IDNP  DL  LME + GPD+PT A +I  R  I+  Y TG+GSI  R
Sbjct: 190 HNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADIERIYDTGKGSIRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V      S ++ +IV+T +P+Q +   +LE+IA  ++ K++  ++DLRDESD +     
Sbjct: 250 AV-----YSEEQGEIVITSLPHQASSGKILEQIANQMQAKKLPMVSDLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           V++        D ++  L+  T L+  F VN+  + L+G +P+   L  +L  ++ FR  
Sbjct: 305 VIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDG-RPKVKGLKQLLTEWLEFRLT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L +A  N+DEV+ IIR++  P+    ELM R       
Sbjct: 364 TVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  +ILEL+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FNLSDKQAESILELKLRHLAKLEEFKIKGEQDELAAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHL 545
             +LSS  RL  ++K+EL+   +     RR+ I+E +    + +++    E + V +S  
Sbjct: 455 ELLLSSERRLKTLVKKELIQDGETYGDNRRSPIIERVDAKALTEQELTPTESVTVVLSDK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG      G+  +  D      +  ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDVDVEGLSYKSGDSYLCSVMGKSNQAAVFIDSTGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  G  +  ++   EDE      + + AT  G      
Sbjct: 563 DSHTLP--SARSQGEPITTRFNMAPGATMQHVL-MGEDEQ-----FFLLATDAGYGFICA 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
             D +  N++GK  + L +    +  +    T +  +L  T  G+ + F + A+
Sbjct: 615 YPDLVSRNKAGKALLSLPTNALAMQPKLINKTADQSLLAITSEGRMLMFSLDAL 668


>gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 751

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 259/788 (32%), Positives = 410/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLSEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 PAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 751

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 410/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E  +L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110]
 gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 798

 Score =  364 bits (934), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 244/664 (36%), Positives = 365/664 (54%), Gaps = 80/664 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN------ 68
           G T++++ D  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +       
Sbjct: 16  GDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTV 75

Query: 69  -KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             K VK AR+ G+V+G++HPH + A YDAL RMAQD+S R  L +GQGNFGS DGD  AA
Sbjct: 76  GAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGAAA 135

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL +    LLD++ + TVDF PNYDGS +EP +L AR P  L+NG  GIAVG+A
Sbjct: 136 MRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLA 195

Query: 188 TNIPTHNLGEVVDGCVAVI-DNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           T IP+HNL E+ D CVA+I  N  +  + L++I+ GPD+P GA +I G   I +AY TGR
Sbjct: 196 TEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYRTGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------------- 291
           GS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   K              
Sbjct: 256 GSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQ 315

Query: 292 ------RIVDIADLRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--M 341
                  ++D+  +RDES +    R+V E K    S D  +  L   TSL++   +N  M
Sbjct: 316 LKAAMLSVLDV--VRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTM 373

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           V ++G KP + +L  +L  ++AFRE  V +R+++ LNK  DR H+L G  + + N+DEV+
Sbjct: 374 VGIDG-KPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVI 432

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
            IIR + +P+ A   L+ R                            LSEVQ   ILE+R
Sbjct: 433 AIIRAAEDPKAA---LIAR--------------------------FNLSEVQAEDILEIR 463

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L +L  L    I+ +L+ L  E K+  DIL S + L  ++ +E+ +     + PRRT ++
Sbjct: 464 LRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEADAKTFEDPRRT-LI 522

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG--VVMRDEDFVTD 579
           +       E  +V E + V VS  G+V+      + +++  G G +      +  D +  
Sbjct: 523 QAEKRAVAEVKVVDEPVTVIVSQKGWVR--AQKGWASEKAAGNGGTAPEYSFKSGDTLYG 580

Query: 580 LFIVSTHTSVLFFSSLGFVYKEK---VWRLPIGS-PQAR--GKALINILSLNQGERITTI 633
            F   +  ++L F S     K+K   V+ +P+ S P AR  G+ +  ++ L+ G  +T  
Sbjct: 581 AFECRSVDTLLVFGS----AKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHVTHF 636

Query: 634 MPFP 637
              P
Sbjct: 637 FAGP 640


>gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
 gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
          Length = 771

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 372/725 (51%), Gaps = 71/725 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+
Sbjct: 20  AITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARV 79

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFGS DGD  AA RYTE RL  
Sbjct: 80  VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTP 139

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 140 FSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLRE 199

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V   CVA+I NP +  + L+ ++ GPDF  G  +I     I   YATGRGS+  R     
Sbjct: 200 VAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQF 259

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I E+   K                  ++ + D 
Sbjct: 260 EEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDA 319

Query: 299 LRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           +RDES +    R+V E K      D  +N L   TS++S   VN+V +    +P + +L 
Sbjct: 320 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLR 379

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N+DEV++ IR +  P  A  
Sbjct: 380 DVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAA-- 437

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            L+E Q   ILE+RL +L  L    I  
Sbjct: 438 -LMAR--------------------------FGLTERQAEDILEMRLRQLARLEGIKIEQ 470

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL     E     D+L +   L  ++ +E+     +    RRT ++E       E  +V 
Sbjct: 471 ELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRT-LIETAERAVLETKVVD 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G++        RA++  G        +  D +   F   T  +++     
Sbjct: 530 EPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDDLYGAFECRTTDTLIAVGDN 581

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKH 654
           G VY   V  LP  S +  G+ +  ++ L  G RI  TI   P   S W     + AT+ 
Sbjct: 582 GRVYSVAVSGLP--SARGDGQPVTTMIDLEAGTRIVHTIAAAP--GSRW-----LLATRR 632

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAI 713
           G     +LSD     R+GK  + L+  DE+L  V        + L +  G+ + F +  +
Sbjct: 633 GFGFAARLSDMSSRQRAGKQFITLEQGDELLRPVPLFEGATQLALLSAKGKFLVFGLDEV 692

Query: 714 RVFAG 718
           +  +G
Sbjct: 693 KSLSG 697


>gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1]
 gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1]
          Length = 752

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 253/741 (34%), Positives = 396/741 (53%), Gaps = 74/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A ++  R  I   Y +GRGSI +R
Sbjct: 190 HNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   +VVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---VVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R     AD ++  L+  T L+S +  +VN++ L+G +P+   L  IL  ++ FR  
Sbjct: 305 VIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDG-RPQLKNLRTILVEWLEFRTN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A   L+ R       
Sbjct: 364 TVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   ILE RL +L  L    IR E + L  E  + 
Sbjct: 414 -------------------FELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S ++L  +++ EL+   +     RR+ IVE      + + + +  E + V +S  
Sbjct: 455 QALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVERAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++   +   S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+D++    LYVV A+  G     K
Sbjct: 563 PAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDDDA----LYVV-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  ++++      +E D L   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVIS 737
            G   +GV G  +A  ++ ++
Sbjct: 675 KGNKIIGVPGDRVASREEFVT 695


>gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
 gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
          Length = 747

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 380/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +   +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAI--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILESERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 773

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 257/735 (34%), Positives = 388/735 (52%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A  
Sbjct: 379 TILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKAA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              L++ Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLTDRQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL +L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELEALRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSS 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P D+       ++ A+ +G
Sbjct: 581 GRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAPVDQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +DS    L+ +        +   +  G+ + F +  ++
Sbjct: 633 FGFLAKVGDMVSRVKAGKAFMTIDSGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG+ L
Sbjct: 693 TLSG----GGRGVIL 703


>gi|13810771|gb|AAK40030.1|AF272020_1 DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 270

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 166/270 (61%), Positives = 217/270 (80%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +LVR+K+I  I DLRDESDR G R+VIE++
Sbjct: 241 DLVRDKKIEGITDLRDESDRTGMRIVIEIR 270


>gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 751

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 410/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E  +L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGAAFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 751

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 411/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPS 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG      G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 751

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 258/788 (32%), Positives = 411/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR K+ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S ++L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSEAKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 PAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
 gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
          Length = 773

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 256/735 (34%), Positives = 389/735 (52%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  + RR+++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A  
Sbjct: 379 TILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKAA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              L++ Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLTDRQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL +L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELETLRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSS 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P D+       ++ A+ +G
Sbjct: 581 GRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAPVDQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++
Sbjct: 633 FGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG+ L
Sbjct: 693 TLSG----GGRGVIL 703


>gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 808

 Score =  363 bits (933), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 253/747 (33%), Positives = 391/747 (52%), Gaps = 75/747 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    + +YL YA++V+ GR +PD+ DG KPV RR+L+ M  MG+    K VK AR+ 
Sbjct: 57  IPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARVV 116

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 117 GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPF 176

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF+PNYDG+F+EP +L AR P +L+NG  GIAVGMAT+IP+HNL EV
Sbjct: 177 ADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLREV 236

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C  +I  PD     +M ++ GPD+P GA I+     I   Y  GRGS+ +R    +E
Sbjct: 237 ADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSLE 296

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + QI VTE+P+ V+   +LE+I EL   K                  ++ + D +
Sbjct: 297 QLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDSV 356

Query: 300 RDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTLI 355
           RD+SD +   R+V E      + + ++N L  +TSL+   SVN+V   L+G +P++  ++
Sbjct: 357 RDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDG-RPQQKGIV 415

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L  +V FR   V RRT++ L +   R H+L G  IA  N+D+V+++IR S  P+    
Sbjct: 416 PALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPK---- 471

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       +DLI              T +LSEVQ   ILE+RL +L  L    I  
Sbjct: 472 ------------RDLI-------------ATFHLSEVQAEDILEIRLRQLARLEGIKIEK 506

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E +    +L+ R+ +   I +E+ + K +    RRT ++E    +     +  
Sbjct: 507 ELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRRT-LIESAEKVTSGAVVPT 565

Query: 536 EDMVVT--VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            D  VT  VS  G++        RA+   G   S +  +  D +       T TS+  F 
Sbjct: 566 ADDPVTIIVSRSGWL--------RARSGHGIDISTLTFKAGDDLLASIETRTSTSLAVFD 617

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  Y      +P G  +  G  L +++ L  G R+T ++    D+++  N  +  +  
Sbjct: 618 TNGRCYNVASALIPTG--RGDGVPLTSLIELQGGGRLTHVIVI--DQTA--NYLIASSGG 671

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V     +D +   ++GK    L+   E++        + +      G+ V FP+S +
Sbjct: 672 YGYVCAG--ADLLTRQKAGKAFATLEP-GEVMHPPAKIAGDTVSAVCSGGRLVLFPLSEV 728

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAI 740
           +V       GV+ + L   + ++++AI
Sbjct: 729 KVMP--KGKGVKLMELEARETLVAVAI 753


>gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 751

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 411/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPS 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG      G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLHAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1]
 gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1]
          Length = 749

 Score =  363 bits (932), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 229/685 (33%), Positives = 367/685 (53%), Gaps = 59/685 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I S+ +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +     Y
Sbjct: 10  DKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGHSY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+VMGK+HPHG+A+IYDAL R+AQ++++R  L++GQGNFG++DGD  AA RYT
Sbjct: 70  AKCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNIDGDNAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  GIAVGMAT+IP
Sbjct: 130 EARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATSIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN+ E+ D  + +I +P+   + L   + GPDFPTG +++  +  I+ +Y  GRG   +
Sbjct: 190 PHNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEESYRVGRGFFRL 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E  +     +VVTEIPYQV K+ ++EK AEL+  +R+  + D+RDES      V
Sbjct: 250 RSRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIRDESAEDIRIV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +I   R    ++++  L++ T  +  F +N+  L+ G  P   +L   LK ++  R+EV+
Sbjct: 310 LIPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESLKQWLEHRQEVL 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR++Y L++   R  +L G  I   NLDEV++IIR    P+                K 
Sbjct: 370 IRRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEPK----------------KK 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LID  +             L+E Q  AIL +RL  L  L   +IR E  +L  E ++  +
Sbjct: 414 LIDRFE-------------LTENQAEAILNMRLRSLRKLEEFEIRKEFETLRAEKEKLQN 460

Query: 490 ILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIVEGL-LDMED--EDCIVREDMVVT 541
           +L SR++   II +E++ V+       L   RRT   E    D +D  +  I +E + + 
Sbjct: 461 LLDSRTKQWKIISEEIIKVRKVFGPHTLLGKRRTTFEEAPRHDFDDIYQAMIEKEPVTIV 520

Query: 542 VSHLGYVKRVP--LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +S  G+++ +   LS Y A          +  ++ D +   F   T   ++  S+ G  +
Sbjct: 521 ISEKGWMRALKGHLSDYNA----------LSFKEGDCLKLAFPAFTTDKIVVISTGGKFF 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP G  +  G+ +  ++ ++    + T       E       ++  + HGN   
Sbjct: 571 AIAANSLPGG--RGHGEPIRILVDMDDEHDLLTAFVHHTQEK------LLLVSSHGNGFI 622

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEI 684
              ++ I   R GK  M +   D++
Sbjct: 623 VPATEVIANTRKGKQVMNVKFPDKV 647


>gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
 gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
          Length = 747

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 376/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RATWKQEDG-----EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
 gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
          Length = 747

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 379/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPISLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
 gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
          Length = 774

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 257/748 (34%), Positives = 382/748 (51%), Gaps = 95/748 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY 
Sbjct: 8   DEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKSTSKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 68  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+I
Sbjct: 127 TESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ EV   CV ++D P+   D L E ++GPDFPT A +I  R  I+  Y TGRGS+ 
Sbjct: 187 PPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYETGRGSLR 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R      +   +  +IVVT++P+QV+   +LE+IA+ ++ K++  +ADLRDESD +   
Sbjct: 247 MRA-----RWINESGEIVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDESDHENPT 301

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFRE 366
            ++ + R    D   ++  L+  T L+  + VN+ V  N  +P    L  +L  +++FR 
Sbjct: 302 RLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLTEWLSFRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL +A  N+DEV+ IIR+   P+    ELM R      
Sbjct: 362 TTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKPKA---ELMSR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS  Q  AILEL+L  L  L    IR E + L  E  E
Sbjct: 413 --------------------FGLSGEQAEAILELKLRHLAKLEEMKIRGEQDELSAERDE 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL S  RL  +IK ELL+  +     RR+ IVE        + + +  + + V +S 
Sbjct: 453 LQSILGSEDRLRELIKDELLADAETYGDDRRSPIVERREAKAFSETELVSNDPVTVVLSE 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  +  D          +   +F  S G  Y 
Sbjct: 513 KGWV------------RAAKGHDIEPEGLSYKAGDAFAMAAKGRNNQQAVFLDSTGRAYS 560

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY-------VVFATK 653
                     P ARG          QGE ++  +  P   ++++ L        V+  T 
Sbjct: 561 LVAHTF----PSARG----------QGEPLSGRI-NPPSGATFSGLLMGDPARRVLLVTD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL---GQCVRFPI 710
            G      L D I  NR+GK  + +    +I+S       +  L    +   G+ + FP+
Sbjct: 606 GGYGFVTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKPLYLGAISNEGRMLVFPL 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISM 738
           S +   A             KG+++IS+
Sbjct: 666 SELPELAK-----------GKGNKIISI 682


>gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846]
          Length = 747

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 379/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPISLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens]
          Length = 756

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 255/754 (33%), Positives = 391/754 (51%), Gaps = 84/754 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +N+YL Y++ VI+  A+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 8   GVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAMSELGLTNSAKFKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV    VA++D P   LD L+E ++GPDFPT A +I  R  I+  Y +GRGS+ +R
Sbjct: 187 HNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEIRKIYQSGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 247 AVGKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D+  ++N L+  T L+  +  ++NM+ L+   P    L+ IL  ++A+R +
Sbjct: 302 VIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDN-TPAVKGLVEILTEWLAYRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LMQR       
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGISDTQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  +L  +IK+E+ +        R  R+ E      M + D +  E + + +S +
Sbjct: 452 QALLASERKLNTLIKKEIQADAQTYGDDRLRRLTERAEAKAMSEHDFVPSEPVTIVLSEM 511

Query: 546 GYVKRV------PLSV-YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           G+V+        P  + Y+A      G S   +R +     +FI ST  S          
Sbjct: 512 GWVRSAKGHDIDPAGLSYKA------GDSFAAVRGKSNQVVVFIDSTERSTAVD------ 559

Query: 599 YKEKVWRLPIGSPQAR--GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
                   P+  P AR  G+ L   L+   G  I  ++   +D+       ++ A+  G 
Sbjct: 560 --------PMKLPSARRQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGY 605

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRV 715
                 +D +  NR+GK+ + L      L        +D+LL+ T  G+ + FP++ +  
Sbjct: 606 GFVCTFNDLVARNRAGKVMITLPDNARALPPMEIHGADDMLLSITAAGRMLMFPVADLPQ 665

Query: 716 FA---GRNSVGVRGISLAKGDQVISMAIVLHADA 746
            +   G   V +     A G+  ++   VL   A
Sbjct: 666 LSKGKGNKIVSIPAAQAAAGEDKLAWLFVLPPQA 699


>gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 762

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 233/676 (34%), Positives = 363/676 (53%), Gaps = 69/676 (10%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW--------------- 67
           D +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  + +E                
Sbjct: 18  DALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASPDVLVANPARN 77

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
              Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+SLR  L++GQGNFG++DGD  AA
Sbjct: 78  TTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAA 137

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL +AA  L+  L + TV+FRP Y+G  QEP V    +PN+L NG  GIAVGMA
Sbjct: 138 MRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANGATGIAVGMA 197

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T+IP HN+ E++D    +IDNPD +   LM+++RGPDFPTG V++     I  AYATGRG
Sbjct: 198 TSIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDFPTGGVLVDSASIISEAYATGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S   R   H E         VVT+IP+QV K+ ++E+IA L+ ++++  +AD+RDESD Q
Sbjct: 258 SFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILADVRDESDEQ 317

Query: 307 GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAF 364
             R+VIE + R    D++++ L+R T L++ F +N+  L+  + P    L  +L  ++  
Sbjct: 318 -IRIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKPVLIEWLKH 376

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+V+R ++ L+K   R  +L G  IA  NLD V+ IIR    P    +E+M   +  
Sbjct: 377 QIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEP----KEVMMAEFG- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q  AIL +RL  L  L   ++R E + L  E 
Sbjct: 432 ------------------------LNDRQAEAILNMRLRSLRKLEEMELRREHSELLKER 467

Query: 485 KECLDILSSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMED---EDCIVRED 537
            + L ++ S +R    +K++L  ++     + D  RR  +VE      +   E  I +E 
Sbjct: 468 DDLLKLVESPARQRTRLKKDLADLRKRYSPDSDFGRRRTLVEEAAPAREIPLEAMIEKEP 527

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+++ +      +  R       +  ++ D     F   T   +L  +  G 
Sbjct: 528 ITVILSERGWIRAM------SGHRDLASADTLKFKEGDGPMIAFHAQTTDKLLLATETGR 581

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           ++     +LP G  +  G  + +++ ++   +I  +MP      +     ++ A+  G  
Sbjct: 582 IFTLGADKLPGG--RGFGDPVRSLVDMDGTGQIVALMP------ARTGGELLLASSDGRG 633

Query: 658 RRNKLSDFIQINRSGK 673
               ++D I   R GK
Sbjct: 634 FVAAVADVIAETRKGK 649


>gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 749

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 339/603 (56%), Gaps = 42/603 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NL+EV++IIR    P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  +IL +RL  L  L    +R E +
Sbjct: 416 LR--------------------------FKLTENQAESILNMRLRSLRKLEEFQLRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIVEGLLDMED---E 530
           SL IE ++  ++L+S  +   +I +E+  V+     +     RRT   +     E+   +
Sbjct: 450 SLKIEKEKLQNLLNSNIKQWKVIAEEITRVRKIFGPETFLGKRRTTFEDAPRHDENDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G+V+ +   +   +    K   G+ +    F TD  IV + T   
Sbjct: 510 AMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKIIVIS-TGGK 568

Query: 591 FFS 593
           FF+
Sbjct: 569 FFT 571


>gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6]
 gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6]
          Length = 773

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 256/735 (34%), Positives = 388/735 (52%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A  
Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKAA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              L++ Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLTDRQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL +L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELETLRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSS 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P D+       ++ A+ +G
Sbjct: 581 GRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAPVDQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++
Sbjct: 633 FGFLAKVGDMVSRVKAGKAFMTIDTGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG+ L
Sbjct: 693 TLSG----GGRGVIL 703


>gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 747

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 247/715 (34%), Positives = 369/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E + GPD+PT A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  + VN+  + L+G +P+   L  +L  +++FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLKHLLSEWLSFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 IAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSQK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +T +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLTAVRSRSTH-QVAFLDSDGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S        +   F    S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFS------PASCAAFQVMASADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDV 668


>gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 764

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 237/673 (35%), Positives = 360/673 (53%), Gaps = 69/673 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N KY K
Sbjct: 10  QGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELGLSANAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++D P  +L+ L+ ++  PD+PT A +I  +  I   Y TGRGSI +
Sbjct: 189 PHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIHKIYKTGRGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E+  GD   IV+T +P+Q +   +LE+IA  +  K++  +ADLRDESD +    
Sbjct: 249 RAVYTQEQ--GD---IVITALPHQCSGGKVLEQIAAQMNAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     A+ ++  L+  T L+  + V  NM+ L+G +P+   L+ IL  ++ FR 
Sbjct: 304 IVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDG-RPQVKNLLTILTEWLVFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+     LM+R      
Sbjct: 363 ETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                DL D                +Q  AILEL+L  L  L    IR E + L  E  +
Sbjct: 414 ----FDLTD----------------IQAEAILELKLRHLAKLEEFKIRGEQDELAKERDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSH 544
               L S  R+  ++K+E+    +     RR+ +VE L    + ++D I  E + V +S 
Sbjct: 454 LQQTLGSDRRMSTLLKKEIQEAAEIYGDDRRSPVVERLEAKALNEKDLIPSESVTVVLSD 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R GKG      G+  R  D         ++   +F  S G  + 
Sbjct: 514 KGWA------------RVGKGHDLDVQGLSYRAGDAYRASARGKSNQPAVFLDSAGRAFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +    +L+ G     ++   ED     N  ++ A+  G     
Sbjct: 562 TDAHSLP--SARSQGEPMTGRFNLSAGANFEHVV-MGED-----NQVLLMASDAGYGFIT 613

Query: 661 KLSDFIQINRSGK 673
              D +  N++GK
Sbjct: 614 DFKDLVSKNKNGK 626


>gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 791

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 258/731 (35%), Positives = 373/731 (51%), Gaps = 80/731 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G  S+++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF M +MG+  + K V
Sbjct: 32  EDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSMSEMGLRADAKPV 91

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GK+HPHG+ + YDAL R+AQ +SLR  LI+GQGNFGS DGD  AA RYTE
Sbjct: 92  KSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 151

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL ++ + TVDF PNYDGSFQEP +L AR P VL+NG  GIAVGMAT IP+
Sbjct: 152 ARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEIPS 211

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL EV    VA++ +P +    L+EI+ GPD+P G  I+     I   Y TGRGSI +R
Sbjct: 212 HNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQIYETGRGSIKVR 271

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIV 294
               IE+ +  + QIVV E+P   +   +L++I E+   K                  I+
Sbjct: 272 ARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTLTLEQNNLKSTIL 331

Query: 295 DIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPE 350
           ++ D +RDES +    R+V E K +    +  +N L  +TSL+S   +N+V + N  +P 
Sbjct: 332 NVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDDRPR 391

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +  L  IL  ++ FR   V RRT++ L+K ++R H+L G    + N+D+V++IIR S  P
Sbjct: 392 QKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNIDKVIKIIRNSDEP 451

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                    DLI +            LS+ Q   IL++RL +L  L  
Sbjct: 452 KA-------------------DLIKE----------FKLSDRQAEDILDIRLRQLARLEG 482

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL  L  E  +   +L S + L   I +E+ S   +    RRT I E    +  E
Sbjct: 483 IKIEQELKELKTERDDLEGLLQSDTALRKRIIKEIESDMKDFGDDRRTLIQEDKRAVA-E 541

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             ++ E + V VS  G+V        R ++      +    +  D +   F V T   + 
Sbjct: 542 TKVIDEPVTVIVSQKGWV--------RVRQGHEHDPTQFSFKAGDALYATFEVRTVDVIQ 593

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G VY   V  LP    +  G  L + ++L  G ++        D+       V+ 
Sbjct: 594 GFGSDGRVYTVPVSELP--GARGDGSPLTSFVNLASGSQMVAYYAGQSDD------LVLL 645

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVE---------TCTQENDILL 698
           +TK G      ++D    N++GK  + +D++   D  L             C  E   LL
Sbjct: 646 STKAGFGFLANVADMTTRNKAGKSFLSMDAKVPGDAPLGAAKVRVGMKQVACLSEASKLL 705

Query: 699 TTKLGQCVRFP 709
              L +  R P
Sbjct: 706 VFPLDELKRLP 716


>gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1]
          Length = 752

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 253/741 (34%), Positives = 395/741 (53%), Gaps = 74/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A ++  R  I   Y +GRGSI +R
Sbjct: 190 HNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+S +  +VN++ L+G +P+   L  IL  ++ FR  
Sbjct: 305 VIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDG-RPQLKNLRTILVEWLEFRTN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A   L++R       
Sbjct: 364 TVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA---LIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   ILE RL +L  L    IR E + L  E  + 
Sbjct: 414 -------------------FELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S ++L  +++ EL+   +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++   +   S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+D++    LYVV A+  G     K
Sbjct: 563 AAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDDDA----LYVV-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  ++++      +E D L   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVIS 737
            G   +GV G  +A  ++ ++
Sbjct: 675 KGNKIIGVPGDRVASREEFVT 695


>gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000]
 gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia
           solanacearum GMI1000]
          Length = 781

 Score =  362 bits (929), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 263/754 (34%), Positives = 383/754 (50%), Gaps = 80/754 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 16  ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 136 ISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGASGIAVGMATEIPSHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +  +    LM+ + GPDFP G  I+     I   Y TGRGS+ +R    I
Sbjct: 196 VATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRARWKI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 256 EDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSLTPEQLQLKQTLLGLLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTL 354
           +RDES +    R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGL 374

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R   V RRT++ L K  DR H+L G  + + N+DEV+RIIR S  P+ A 
Sbjct: 375 REILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESDEPKPA- 433

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LMQ                             LSE Q   ILE+RL +L  L    I 
Sbjct: 434 --LMQ--------------------------AFGLSERQAEDILEIRLRQLARLEAIKIE 465

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L  E  E   +L S + +   I +E+ +   +    RRT I E       E  +V
Sbjct: 466 QELKDLREEQAELDVLLKSETMMRRRIVKEIETDAKQFGDDRRTLIQEE-RRAAAEVKVV 524

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        R ++  G   +    +  D + D F   T  ++L F +
Sbjct: 525 DEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGT 576

Query: 595 -----LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                 G VY   V  LP G  +  G  L  ++ L  G  I   +      +S     V+
Sbjct: 577 RDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTL------ASHAEQNVL 628

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
            +T+ GN    K+ D +   + GK  + LD  D+        ++       +  G+ + F
Sbjct: 629 ISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPEDAYGAACLSANGRLLLF 688

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           P++ ++  A     G RG+ L + ++  ++A  L
Sbjct: 689 PLAEVKTLAS----GGRGVILMELEKNETLAQAL 718


>gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
 gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
          Length = 777

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 248/685 (36%), Positives = 370/685 (54%), Gaps = 68/685 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP +    LM +I GPDFP G  I+   T I  AY TGRGS+ +R    I
Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A  
Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRDADEPKAA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              L++ Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLTDRQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL +L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELEALRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSS 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +      P D+       ++ A+ +G
Sbjct: 581 GRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAPVDQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS 680
                K+ D +   ++GK  M +D+
Sbjct: 633 FGFLAKVGDMVSRVKAGKAFMTIDT 657


>gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
 gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
          Length = 773

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 261/745 (35%), Positives = 390/745 (52%), Gaps = 76/745 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  
Sbjct: 12  SDAPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGP 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA
Sbjct: 69  DAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+A
Sbjct: 129 MRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+     I +AY TGRG
Sbjct: 189 TEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR----------------- 289
           S+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                   
Sbjct: 249 SLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNT 308

Query: 290 EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           +K ++D+ D +RDES ++   R+V E K R       +N L  +TSL+S  ++N+V +  
Sbjct: 309 KKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGA 368

Query: 347 -YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   NLDEV+RIIR
Sbjct: 369 DGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIR 428

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S  P+ A   LM                              L+E Q   ILE+RL +L
Sbjct: 429 ESDEPKAA---LMS--------------------------AFGLTERQAEDILEIRLRQL 459

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +    RRT +++   
Sbjct: 460 ARLEKIKIEKELESLRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQEK 518

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
               E  +V E + V VS  G+V        RA +  G   +G   +  D +   F   T
Sbjct: 519 RATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRT 570

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              ++ + S G VY   V  LP G  +  G  + +++ L  G  +        D+     
Sbjct: 571 PDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQP---- 624

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQ 704
             ++ A+ +G     K+ D +   ++GK  M +D     L+ +        +   +  G+
Sbjct: 625 --LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNATQVACLSSGGR 682

Query: 705 CVRFPISAIRVFAGRNSVGVRGISL 729
            + F I  ++  +G    G RG++L
Sbjct: 683 LLVFGIDEMKALSG----GGRGVTL 703


>gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN]
 gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN]
          Length = 774

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 265/735 (36%), Positives = 386/735 (52%), Gaps = 75/735 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGS +EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLDEINQGTVDFMPNYDGSSEEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I+   LM+ I GPDFP GA I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKIEHAELMQHIAGPDFPGGAQIISSDAEISAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
           + +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 261 ELARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQTKQTMLALLDAV 320

Query: 300 RDESDRQG-YRVVIELK--RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           RDES R    R+V E K  R    D + N L  YTSL+S  S+NMV + G  +P +  L 
Sbjct: 321 RDESGRDAPVRLVFEPKSSRIDQTDFV-NTLLAYTSLESNASLNMVMVGGDGRPRQKGLS 379

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 380 EILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA-- 437

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              LS+ Q   ILE+RL +L  L +  I  
Sbjct: 438 -LM--------------------------AAFGLSDRQAEDILEIRLRQLARLEKIKIEK 470

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  ++L S S +  ++ +E+     +    RRT +++       E  +V 
Sbjct: 471 ELAELRDEKAKLEELLGSESAMKRLLIKEIEGDAKQYGDERRT-LIQQEKRATFEARVVD 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S 
Sbjct: 530 EPVTVVVSQKGWV--------RALKGHGLDVAGFTFKAGDGLYAAFQCRTPDTLVAWGSN 581

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +        +++      ++ A+ +G
Sbjct: 582 GRVYSVAVAMLPGG--RGDGVPVTSLIELESGSHLLHYYAASAEQA------LLLASSNG 633

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D+    L  +        I   +  G+ + F I  ++
Sbjct: 634 FGFVAKVGDMVSRVKAGKSFMTIDAGAAPLKPMPMLPDATHIACLSSGGRLLVFGIDEMK 693

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG++L
Sbjct: 694 TLSG----GGRGVTL 704


>gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
 gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
          Length = 747

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 368/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E + GPD+PT A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  + VN+  + L+G +P+   L  +L  +++FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLKHLLSEWLSFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  R+ D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYREGDGLLAAVRSRSTH-QVAFLDSDGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDV 668


>gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1]
          Length = 749

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 316/544 (58%), Gaps = 39/544 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +   + Y KCA
Sbjct: 14  IEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNPGQSYAKCA 73

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE R+
Sbjct: 74  RIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTEARM 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ + +D++DFR  Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 134 TEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPHNV 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I +P+ + + L + + GPDFPTG +++  +  I+ +Y TGRG   +R   
Sbjct: 194 AELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYRTGRGLFRLRSRW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E++S     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+ DES      V++  
Sbjct: 254 HQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVLVPK 313

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R   A++++  L++ T  +  F +N+  L  G  P   +L   L+ ++  R+EV+VRR+
Sbjct: 314 NRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLEHRKEVLVRRS 373

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y LN+   R  +L G  IA  NLD+V++I+R    P   ++EL++              
Sbjct: 374 SYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEP---KKELIEH------------- 417

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  AIL +RL  L  L   +IR E  SL  E  +   +L+S
Sbjct: 418 -------------FKLTDNQAEAILNMRLRSLRKLEEFEIRKEFESLKTEEAQLQALLAS 464

Query: 494 RSRLLGIIKQELLSVK-----DELDTPRRTRIVEGL-LDMED--EDCIVREDMVVTVSHL 545
             +   +I  E+  V+     + +   RRT   +    D+ D  +  I RE + + +S  
Sbjct: 465 NIKQWKMISDEITKVRKIFGPETILGKRRTTFEDAPKHDVNDIQQAMIEREPVTIIISEK 524

Query: 546 GYVK 549
           G+++
Sbjct: 525 GWMR 528


>gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619]
 gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619]
          Length = 752

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 255/741 (34%), Positives = 395/741 (53%), Gaps = 74/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   L+ L E I+GPD+PT A +I  R  I   Y +GRGSI +R
Sbjct: 190 HNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEILKIYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R     AD ++  L+  T L+S +  +VN++ L+G +P+   L  +L  ++ +R  
Sbjct: 305 VIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDG-RPQLKNLRALLLEWLQYRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L K   R H+L GL  A  NLDEV+ IIR   +P+ A              
Sbjct: 364 TVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQA-------------- 409

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             LI   D             L+E+Q   ILE RL +L  L    IR E + L  E  + 
Sbjct: 410 --LIARFD-------------LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S ++L  +++ EL+   +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSDAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++   +   S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+D++    LYVV A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGRLTPPPGATFECVL-LPDDDA----LYVV-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++S      +E D L   T  G+ + F ++ +      
Sbjct: 615 GEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQDWLAAVTTEGRLLVFKVADLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVIS 737
            G   +GV G  +A  ++ ++
Sbjct: 675 KGNKIIGVPGDRVASREEYVT 695


>gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C]
          Length = 749

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 338/603 (56%), Gaps = 42/603 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NL+EV++IIR    P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  +IL +RL  L  L    +R E +
Sbjct: 416 LR--------------------------FKLTENQAESILNMRLRSLRKLEEFQLRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIVEGLLDMED---E 530
           SL IE ++   +L+S  +   +I +E+  V+     +     RRT   +     E+   +
Sbjct: 450 SLKIEKEKLQSLLNSNIKQWKVIAEEITRVRKIFGPETFLGKRRTTFEDAPRHDENDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G+V+ +   +   +    K   G+ +    F TD  IV + T   
Sbjct: 510 AMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKIIVIS-TGGK 568

Query: 591 FFS 593
           FF+
Sbjct: 569 FFT 571


>gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 747

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 368/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E + GPD+PT A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     I +  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IFIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R     A+ ++  L+  T L+  + VN+  + L+G +P+   L  +L  +++FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLKHLLSEWLSFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAEERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSQK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTH-QVAFLDSDGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDV 668


>gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 753

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 247/712 (34%), Positives = 383/712 (53%), Gaps = 71/712 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ +EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E  +L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDNRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKIS 666


>gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           L20]
 gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 748

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 247/742 (33%), Positives = 393/742 (52%), Gaps = 74/742 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +
Sbjct: 187 PHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAV--WKKEDG---EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  ++ FR 
Sbjct: 302 IVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLQTILTEWLTFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL LRL  L  L   +++ E + L  E  E
Sbjct: 412 --------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG      G+  R  D         ++  V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L +G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPEGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 718 --GRNSVGVRGISLAKGDQVIS 737
             G   + +   +  +G+++++
Sbjct: 672 GKGNKIINISAQAAKEGNELLA 693


>gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 748

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 249/744 (33%), Positives = 394/744 (52%), Gaps = 78/744 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +
Sbjct: 187 PHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAV--WKKEDG---EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  ++ FR 
Sbjct: 302 IVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLHTILTEWLTFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q+ AIL LRL  L  L   +++ E + L  E  E
Sbjct: 412 --------------------FNLSEAQSEAILNLRLRHLAKLEEHELQAEKSQLEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH----TSVLFFSSLGFVYK 600
            G+V            R  KG    V        D ++   H      V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L +G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPEGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT----TKLGQCVRFPISAIRVF 716
              D +  N++GK  + L    ++L  +    END  L+    + +G+ + FPI+ +   
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLI--ENDAELSLVAMSSVGRMLVFPITELPQL 669

Query: 717 A---GRNSVGVRGISLAKGDQVIS 737
           +   G   + +   +  +G+++++
Sbjct: 670 SKGKGNKIINISAQAAKEGNELLA 693


>gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N]
 gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N]
          Length = 772

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 253/682 (37%), Positives = 351/682 (51%), Gaps = 68/682 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+ G+V+GKY
Sbjct: 29  EQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARVVGDVLGKY 88

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   A  LL++
Sbjct: 89  HPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPIARLLLEE 148

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL EV   CVA+
Sbjct: 149 LDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACVAL 208

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP +  + L+ +I GPDF  G  +I     I + YATGRGS+  R     E+ +  + 
Sbjct: 209 IRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQFEEMARGQW 268

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK------------------RIVDIADLRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                   +  +  +RDES + 
Sbjct: 269 QLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDAVRDESGKD 328

Query: 307 -GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TS++    VN+V +    +P +  L  +L  ++A
Sbjct: 329 AAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLRSVLDEWLA 388

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR E VVRRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P+ A   LM R   
Sbjct: 389 FRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPA---LMDR--- 442

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q   ILE+RL +L  L    I  EL     E
Sbjct: 443 -----------------------FALTERQAEDILEMRLRQLARLEGFKIEQELADKREE 479

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                D+L +   L  ++ +E+ +   +    RRT ++E       E  ++ E + V VS
Sbjct: 480 QSRLQDLLDNPGSLKRLLIKEIEADAKQHGDERRT-LIESAERAVLETKVLDEPVTVVVS 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA++  G   +    +  D +   F   T  S++     G VY   V
Sbjct: 539 RNGWL--------RARQGHGHDAAQFTFKQGDDLYGAFECRTTDSLIAVGDNGRVYTVAV 590

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP  S +  G+ +  ++ L  G RI   +    D S W     + AT+       +LS
Sbjct: 591 SALP--SARGDGQPVTTMIDLEAGTRIVHTIAAAAD-SRW-----LLATQSAYGFATRLS 642

Query: 664 DFIQINRSGKIAMKLDSRDEIL 685
           D     R+GK  + LD  D +L
Sbjct: 643 DMSSRQRAGKQFVTLDKGDVLL 664


>gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
 gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
          Length = 752

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 243/725 (33%), Positives = 382/725 (52%), Gaps = 59/725 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGKNLLPPGGGDDDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  SEMGLRPNAAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGA-VILGRTGIK 238
           GIAVGMAT+IP+HN  E+ D  + +I + D  ++ L+E+ I GPDFPTG  +I  R  I 
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSII 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +Y TGRG   +R    IE       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D
Sbjct: 241 ESYKTGRGGFRVRAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLED 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           +RDES      V+I   R   A +++  +++ + L+S F +NM  L+ G  P+   L  +
Sbjct: 301 IRDESAEDIRVVLIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK ++  R EV+ RR+++ L     R  +L G  IA  N+DEV+ IIR    P+     +
Sbjct: 361 LKEWLDHRREVLQRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEPKPV---M 417

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+R                            L++ Q  AIL +RL  L  L   +IR E 
Sbjct: 418 MER--------------------------FGLTDNQVEAILNMRLRSLRKLEEFEIRKEF 451

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---D 529
           + L  E  E   +L+S  +    +  E+  VK +         RRT+  E     +    
Sbjct: 452 DGLSKEKSEIEVLLASDEKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAEAPEADDAALQ 511

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           +  I +E + V VS  G+++ +   +           S +  ++ D +   F   T   +
Sbjct: 512 QAMIEKEPITVVVSEKGWIRALKGHISET--------STLTFKEGDALKVAFPAQTTDKI 563

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYV 648
           L  ++ G  Y     +LP G  +  G+ L  ++ + N  + +T  +  P+ +        
Sbjct: 564 LIITTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTAFVHDPQRKQ------- 614

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN      ++ +   R GK  M L + DE   +   + ++ + +  +  + V F
Sbjct: 615 LVASTAGNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSGDH-VAVVGENRKMVVF 673

Query: 709 PISAI 713
           P+S I
Sbjct: 674 PLSQI 678


>gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 747

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 369/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E + GPD+PT A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R     A+ ++  L+  T L+  + VN+  + L+G +P+   L  +L  +++FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLKHLLSEWLSFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 IAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  R+ D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYREGDGLLAAVRSRSTH-QVAFLDSDGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDV 668


>gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
          Length = 792

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 239/653 (36%), Positives = 353/653 (54%), Gaps = 70/653 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVK 73
           S+ + +  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ ++     K VK
Sbjct: 16  SLWLANYAQRAYLEYALSVVKGRALPDVSDGQKPVQRRILYAMERMGLGYSGNTAAKPVK 75

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+G++HPHG+ A YDAL RMAQD++ R  LI+GQGNFGS DGD  AA RYTE 
Sbjct: 76  SARVVGDVLGRFHPHGDQAAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTEA 135

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  LLD++ + TVDF PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+H
Sbjct: 136 RLAKISSLLLDEIDEGTVDFMPNYDGSTEEPKQLPARLPFTLLNGASGIAVGLATEIPSH 195

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           N+ EV   CVA+I  P +  + L E++ GPD+P G  +I     I  AY TGRGS+ +R 
Sbjct: 196 NISEVAAACVALIKTPKLKDEELFELLPGPDYPGGGQIISAEADIAEAYRTGRGSLKVRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVD 295
              IE+ +  + Q+VVTE+P  V+   +LE+I EL   K                  ++ 
Sbjct: 256 RWKIEELARGQWQLVVTELPPGVSTQKVLEEIEELSNPKVKAGKKTVTQEQTQLKSTLLS 315

Query: 296 IAD-LRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVN--MVALNGYKPE 350
           + D +RDES +    R+V E K      + ++  L  +TSL++   +N  MV L+G KP 
Sbjct: 316 VLDGVRDESSKDAPVRLVCEPKTSKIDQNELITTLLAHTSLETSAPINLTMVGLDG-KPV 374

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + ++  +L+ ++AFR + + RR+++ L K +DR H+L G    + N+DEV++IIR S  P
Sbjct: 375 QKSMRQMLEEWIAFRRQTIARRSQHRLGKVQDRIHILEGRQTVLLNVDEVIKIIRNSDEP 434

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + A   L++R                            LS+ Q   ILE+RL +L  L  
Sbjct: 435 KPA---LIKR--------------------------FRLSDRQAEDILEIRLRQLARLEA 465

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL  L  + KE  DIL S + L  ++ +E+ +        RRT +++       E
Sbjct: 466 IKIEQELAELRGKEKELQDILGSPAALRKLMVKEIEADAKAFGDARRT-LIQAEKKAVAE 524

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             ++ E + V VS  G+V        RA++  G   +    +  D +   F   T   +L
Sbjct: 525 VKVIDEPVTVVVSQKGWV--------RARQGHGHDAASFAFKAGDGLYGTFECRTVDVML 576

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
            F S G VY   V  LP    +  G+ L  ++ L  G ++      P   S+W
Sbjct: 577 AFGSNGRVYSVPVSALP--GARGDGQPLTTMVELEAGTQLVHYYAGP--ASAW 625


>gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440]
 gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440]
          Length = 752

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 252/741 (34%), Positives = 395/741 (53%), Gaps = 74/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A ++  R  I   Y +GRGSI +R
Sbjct: 190 HNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+S +  +VN++ L+G +P+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDG-RPQLKNLRTLLVEWLEFRTN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A   L++R       
Sbjct: 364 TVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA---LIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   ILE RL +L  L    IR E + L  E  + 
Sbjct: 414 -------------------FELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S ++L  +++ EL+   +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++   +   S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+D++    LYVV A+  G     K
Sbjct: 563 AAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDDDA----LYVV-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  ++++      +E D L   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVIS 737
            G   +GV G  +A  ++ ++
Sbjct: 675 KGNKIIGVPGDRVASREEFVT 695


>gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126]
          Length = 761

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 238/711 (33%), Positives = 383/711 (53%), Gaps = 71/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M  +G+  N KY K 
Sbjct: 11  GVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLSANAKYKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + +  LL++LG+ TVD+ PN+DG+  EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 AKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+ + C  ++DN   +L  ++E + GPD+PT A +I  ++ I+  Y TGRGSI +R
Sbjct: 190 HNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQKLYETGRGSIKMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  +GD   +V+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +    +
Sbjct: 250 AVYMEE--NGD---VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           +   R    DV  ++  L+  T L+  + V  NM+ L+G +P+   L  IL  ++ +R++
Sbjct: 305 VITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDG-RPQVKDLRTILSEWLQYRKD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R       
Sbjct: 364 TVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKP---KPELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FGLSDTQAEAILELKLRHLAKLEEMKIKGEQDELAEERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+L+  ++    RR+ IVE      + +++ +  E + V +S  
Sbjct: 455 QQLLGSDRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKELVPAESVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+             R  KG      G+  +  D         ++   +F  S G  +  
Sbjct: 515 GWA------------RCAKGHDIDAEGLSYKAGDAYLSSAEGKSNQPAVFMDSSGRTFSC 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L    S+  GE    ++   +DES +     +  +  G      
Sbjct: 563 DAHGLP--SARSQGEPLTGRFSIVGGESFQHVI-MAQDESKF-----LVGSDAGYGFVGT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT-TKLGQCVRFPI 710
             D +  N++GK  + L +  +++     T  ++D  L+ +  G+ + FP+
Sbjct: 615 FKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSDWCLSISNEGRMLMFPL 665


>gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 747

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 246/715 (34%), Positives = 365/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E + GPD+PT A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLRQLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDSLLAAVRSRSTH-QVAFLDSEGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPGSGASFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +LS    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTDRIVAVTSAGNLLAVPATDV 668


>gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
 gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
          Length = 760

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 242/708 (34%), Positives = 385/708 (54%), Gaps = 65/708 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M  ++GPD+PT A +I  +  ++  Y TGRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E       +IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGN-----EIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRA 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R       
Sbjct: 362 TVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V +S  
Sbjct: 453 ELLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPITVVLSEK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           G+++           +G    +G +  +  D         ++   +F  + G  Y  +  
Sbjct: 513 GWIRHA---------KGHDVDAGSLNYKSGDNYLAHSRGKSNQQAVFLGNDGRSYSLESH 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     K SD
Sbjct: 564 SLP--SARSQGEPITGRLNIAAGTNIRHVV-MGEEEQLW-----LVGSDAGYGFVCKGSD 615

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPI 710
            +  NRSGK  + L    E+L  +     END IL  T  G+ + FPI
Sbjct: 616 LLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEILAITNQGRMLLFPI 663


>gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 751

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 259/788 (32%), Positives = 410/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPS 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 LALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG      G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-MPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLHAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 751

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 258/788 (32%), Positives = 410/788 (52%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLGEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  +++        ++N +   T  G+ + F IS +      
Sbjct: 615 GEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
 gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
          Length = 746

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 225/705 (31%), Positives = 370/705 (52%), Gaps = 65/705 (9%)

Query: 21  ITDEMQNS----YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           + DE+QN     YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +    ++ K AR
Sbjct: 6   VKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GK+HPHG+ ++YDAL R+AQD+S    L+ GQGNFG+VDGD  AA RYTE +L 
Sbjct: 66  VVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYTETKLT 125

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K + +LL D+ ++TV+F+  YDG   EP +L +++PN+L NG  GIAVGMAT+IP HN+ 
Sbjct: 126 KTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIPPHNVQ 185

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSH 255
           E+ +  + + DNP+  +  L++ I+GPDFPTG ++   +  I  AY TGRG   I+    
Sbjct: 186 EICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEIKSKYK 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E       QI VTEIPY VNK+ ++EK+A ++  K+   +  + DESD +  R+V+  K
Sbjct: 246 VEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK-IRIVLRPK 304

Query: 316 -RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
            R  + + ++N L+  + L++   +NM  LN   +P+   L  ILK+ +  R  ++  + 
Sbjct: 305 NRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIILNNKI 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L K + R  +L G  I   NL+++++IIR S +P+                    +L
Sbjct: 365 NFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKK-------------------EL 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I    +T+          +Q  +ILE+RL  L  +   DI+ E  +L +E K    IL+S
Sbjct: 406 IKKYKFTL----------IQVDSILEMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNS 455

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++     I  E   V +E        PRR+ I+E  +   D++           S L  +
Sbjct: 456 KTLQRKEINNEYTEVINEFGDNSTYGPRRS-ILEKFVKFTDDEL---------ESKLEVI 505

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL-FIVSTHTS--VLFFSSLGFVYKEKVWR 605
           + + +S+     +  K + G   R E    D+  I++  TS  +   S++G  Y      
Sbjct: 506 ENINVSL--INEKFLKSKKGTYKRSEKNSDDVSLIINCKTSDQICLLSNIGKSYILNCSN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L  GS   +G  + + L L   E+I  +  + E +       ++ ++++G     K  D 
Sbjct: 564 LKFGS--TKGFLISSYLKLKDEEKIVDLFVYKEKQE------IILSSQNGYGFFVKSEDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               +SGK    +   D+        +E D  +   L   +++ +
Sbjct: 616 FTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNLKYKL 660


>gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 751

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 257/788 (32%), Positives = 408/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLSEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEARALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L    +++        ++N +   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKALLSLPGGAKVILPRPVADREQNWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVITQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 748

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 247/742 (33%), Positives = 391/742 (52%), Gaps = 74/742 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 8   EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +
Sbjct: 187 PHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   +K  G   +IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +    
Sbjct: 247 RAV--WKKEDG---EIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIR 301

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    D   +++ L+  T L+  + V  NM+ L+G KP    L  IL  ++ FR 
Sbjct: 302 IVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDG-KPAVKNLQTILTEWLTFRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R      
Sbjct: 361 TTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q+ AIL LRL  L  L   +++ E + L  E  E
Sbjct: 412 --------------------FNLSEAQSEAILNLRLRHLAKLEEHELQEEKSQLEKERDE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +S 
Sbjct: 452 LQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVILSE 511

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH----TSVLFFSSLGFVYK 600
            G+V            R  KG    V        D ++   H      V+F  S G  Y 
Sbjct: 512 KGWV------------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA- 717
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 718 --GRNSVGVRGISLAKGDQVIS 737
             G   + +   +  +G+++++
Sbjct: 672 GKGNKIINISAQAAKEGNELLA 693


>gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
 gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
          Length = 762

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 233/676 (34%), Positives = 362/676 (53%), Gaps = 69/676 (10%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW--------------- 67
           D +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  + +E                
Sbjct: 18  DALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLKMEPGGASPDVLVANPARN 77

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
              Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+SLR  L++GQGNFG++DGD  AA
Sbjct: 78  TTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAA 137

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL +AA  L+  L + TV+FRP Y+G  QEP V    +PN+L NG  GIAVGMA
Sbjct: 138 MRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANGASGIAVGMA 197

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T+IP HN+ E++D    +IDNPD +   LM I+RGPDFPTG V++     I  AYATGRG
Sbjct: 198 TSIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDFPTGGVLVDSPSIISEAYATGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S   R   H E         VVT+IP+QV K+ ++E+IA L+ ++++  +AD+RDESD +
Sbjct: 258 SFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILADVRDESD-E 316

Query: 307 GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAF 364
             R+VIE + R    DV+++ L+R T L++ F +N+  L+  + P    L  +L  ++  
Sbjct: 317 LIRIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKPVLIEWLKH 376

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+V+R ++ L+K   R  +L G  IA  NLD V+ IIR    P    +E+M   +  
Sbjct: 377 QIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEP----KEVMMAEFG- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q  AIL +RL  L  L   ++R E + L  E 
Sbjct: 432 ------------------------LNDRQAEAILNMRLRSLRKLEEMELRREHSELLKER 467

Query: 485 KECLDILSSRSRLLGIIKQELLSVKD----ELDTPRRTRIVEGLLDMED---EDCIVRED 537
            + + ++ S +R    +K++L  ++     + D  RR  +VE      +   E  I +E 
Sbjct: 468 DDLIKLVESPARQRTRLKKDLADLRKRYSPDSDFGRRRTLVEEAAPAREIPLEAMIEKEP 527

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+++ +      +  R       +  ++ D     F   T   +L  +  G 
Sbjct: 528 ITVILSERGWIRAM------SGHRDLASADTLKFKEGDGPMIAFHAQTTDKLLLATETGR 581

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           ++     +LP G  +  G  + +++ ++   +I  +MP      +     ++ A+  G  
Sbjct: 582 IFTLGADKLPGG--RGFGDPVRSLVDMDGTGQIVALMP------ARTGGELLLASSDGRG 633

Query: 658 RRNKLSDFIQINRSGK 673
               ++D I   R GK
Sbjct: 634 FVAAVADVIAETRKGK 649


>gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616]
          Length = 773

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 260/745 (34%), Positives = 390/745 (52%), Gaps = 76/745 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  
Sbjct: 12  SDAPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGP 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA
Sbjct: 69  DAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+A
Sbjct: 129 MRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+     I +AY TGRG
Sbjct: 189 TEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR----------------- 289
           S+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                   
Sbjct: 249 SLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNT 308

Query: 290 EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           +K ++D+ D +RDES ++   R+V E K R       +N L  +TSL+S  ++N+V +  
Sbjct: 309 KKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGA 368

Query: 347 -YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   NLDEV+RIIR
Sbjct: 369 DGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIR 428

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S  P+ A   LM                              L++ Q   ILE+RL +L
Sbjct: 429 ESDEPKAA---LMS--------------------------AFGLTDRQAEDILEIRLRQL 459

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +    RRT +++   
Sbjct: 460 ARLEKIKIEKELESLRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQEK 518

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
               E  +V E + V VS  G+V        RA +  G   +G   +  D +   F   T
Sbjct: 519 RATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRT 570

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              ++ + S G VY   V  LP G  +  G  + +++ L  G  +        D+     
Sbjct: 571 PDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQP---- 624

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQ 704
             ++ A+ +G     K+ D +   ++GK  M +D     L+ +        +   +  G+
Sbjct: 625 --LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNATQVACLSSGGR 682

Query: 705 CVRFPISAIRVFAGRNSVGVRGISL 729
            + F I  ++  +G    G RG++L
Sbjct: 683 LLVFGIDEMKTLSG----GGRGVTL 703


>gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 770

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 345/638 (54%), Gaps = 64/638 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M Q+ ++    + K AR+ G+V+GK
Sbjct: 26  LSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLDPTGAFKKSARVVGDVIGK 85

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A++YDA+ R+AQD++LR  L+EGQGNFG++DGD  AA RYTE RL   A  L+ 
Sbjct: 86  YHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTATAARLMA 145

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L + TVDF P Y+G   EP +    +PN+L NG  GIAVGMAT+IP+HN+ E+VD  + 
Sbjct: 146 GLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGSTGIAVGMATSIPSHNVAEIVDATLM 205

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV---------- 253
           +IDNP ++   LM +  GPDFPTG V++     I +AY  G+G+I +RG           
Sbjct: 206 LIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAISSAYEVGKGAIRVRGRFSTGRDEAGE 265

Query: 254 ---SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              S IEK    + Q+V++EIPY V K  ++E+IA L+ +K++  + D+RDESD     V
Sbjct: 266 WEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIAALIADKKLPILEDVRDESDEHIRIV 325

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVV 369
           ++   R    D++   LYR T L+S FS+N+  L+  + P    L  IL+ +V  + +++
Sbjct: 326 LVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLDARRTPGVLGLKQILQEWVIAQIDIL 385

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRR+++ L+K   R  +L G  IA  NLD ++ IIR    P    + +M   +       
Sbjct: 386 VRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEIIRTEDEP----KPVMMAEFG------ 435

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q  AIL +RL  L  L   ++R E ++L  E  E   
Sbjct: 436 -------------------LTDRQAEAILNMRLRSLRKLEEMELRRERDALLAEQDELTK 476

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGLLDME--DEDCIVREDMVVTV 542
           +L + +R    +K++L +++ E   DT    RRT I E     E   +  I +E + V +
Sbjct: 477 LLENPARQRTRLKRDLAALRKEYGPDTALGRRRTTIAEAAPTREFSMDAMIEKEPVTVIL 536

Query: 543 SHLGYVK----RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           S  G+++     VPL         GKG      ++ D     F   T   +L     G  
Sbjct: 537 SQRGWIRAAKGHVPLGT------DGKGED-FKFKEGDGPAFAFHAQTTDKLLIAIDNGRF 589

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           Y     +LP    +  G+ +  +L ++   ++  I P+
Sbjct: 590 YTLGADKLP--GARGFGEPIRTVLDIDPNGQVVAIFPW 625


>gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 747

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 366/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E + GPD+PT A +I     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  +  ++N++ L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDG-RPQVKNLRQLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTH-QVAFLDSEGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATEV 668


>gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
 gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
          Length = 781

 Score =  360 bits (925), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 262/754 (34%), Positives = 385/754 (51%), Gaps = 80/754 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 16  ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 136 ISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +  +    LM+ + GPDFP G  I+     I   Y TGRGS+ +R    I
Sbjct: 196 VAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRARWKI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 256 EDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPDQLQLKQTMLGLLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTL 354
           +RDES +    R+V E K +        N L  +TSL+S   +N  M+  +G +P +  L
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPINLVMIGTDG-RPRQKGL 374

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++A+R E V RRT++ L K  DR H+L G  + +  ++EV+RIIR S  P+ A 
Sbjct: 375 ADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPKPA- 433

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LMQ                             LSE Q   ILE+RL +L  L    I 
Sbjct: 434 --LMQ--------------------------AFGLSERQAEDILEIRLRQLARLEAIKIE 465

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L  E  +   +L S + +   I +E+ +   +    RRT I E       E  +V
Sbjct: 466 QELKDLREEQADLDVLLKSETVMRRRIIKEIETDAKQYGDDRRTLIQEE-RRAAAEVKVV 524

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        R ++  G   +    +  D + D F   T  ++L F +
Sbjct: 525 DEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDVLYDTFECRTTDALLIFGT 576

Query: 595 -----LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                 G VY   V  LP G  +  G  L  ++ L  G  I   +    +++      V+
Sbjct: 577 RDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTLAGHAEQN------VL 628

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
            +T+ GN    K+ D +   + GK  + LD  D+        ++   +   +  G+ + F
Sbjct: 629 ISTRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPEDAYGVACLSANGRLLLF 688

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           P+S ++  A     G RG+ L + ++  ++A  L
Sbjct: 689 PLSEVKTLAS----GGRGVILMELEKNETLAQAL 718


>gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 747

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 242/715 (33%), Positives = 367/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL ++ + T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E + GPD+PT A +I     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  +  ++N++ L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDG-RPQVKNLRQLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL++   +    RR+ +V+      +++ + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELIADAKKFGDARRSPLVQRDAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTH-QVAFLDSEGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P S +
Sbjct: 614 RFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPASDV 668


>gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
 gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
          Length = 773

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 260/745 (34%), Positives = 390/745 (52%), Gaps = 76/745 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  
Sbjct: 12  SDSPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGP 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA
Sbjct: 69  DAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+A
Sbjct: 129 MRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+     I +AY TGRG
Sbjct: 189 TEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR----------------- 289
           S+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                   
Sbjct: 249 SLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNT 308

Query: 290 EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           +K ++D+ D +RDES ++   R+V E K R       +N L  +TSL+S  ++N+V +  
Sbjct: 309 KKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGA 368

Query: 347 -YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   NLDEV+RIIR
Sbjct: 369 DGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIR 428

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S  P+ A   LM                              L++ Q   ILE+RL +L
Sbjct: 429 ESDEPKAA---LMS--------------------------AFGLTDRQAEDILEIRLRQL 459

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +    RRT +++   
Sbjct: 460 ARLEKIKIEKELESLRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGDDRRT-LIQQEK 518

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
               E  +V E + V VS  G+V        RA +  G   +G   +  D +   F   T
Sbjct: 519 RATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRT 570

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              ++ + S G VY   V  LP G  +  G  + +++ L  G  +        D+     
Sbjct: 571 PDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQP---- 624

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQ 704
             ++ A+ +G     K+ D +   ++GK  M +D     L+ +        +   +  G+
Sbjct: 625 --LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNATQVACLSSGGR 682

Query: 705 CVRFPISAIRVFAGRNSVGVRGISL 729
            + F I  ++  +G    G RG++L
Sbjct: 683 LLVFGIDEMKTLSG----GGRGVTL 703


>gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
 gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
          Length = 759

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 246/752 (32%), Positives = 406/752 (53%), Gaps = 72/752 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + +T   + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  EGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELGLSALSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL ++   T D++PN+DG+ +EPV+L AR P++L+NG  GIAVGMAT+IP
Sbjct: 129 ESRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  +ID+P  +L  LM  ++GPD+PT A +I   + IK  Y TGRGS   
Sbjct: 189 PHNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYETGRGSFKS 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E       +IV+T +P++V+   +L++IA+ +++K++  IADLRDESD +    
Sbjct: 249 RAVYTVENG-----EIVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R    D+  +++ L+  T L+    VN+  L    +P+   L+ IL  ++ +R +
Sbjct: 304 LVIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILNEWLVYRMK 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  N+DEV+ IIR     + A+ ELM R       
Sbjct: 364 TVRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTC---DDAKAELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR E+++L  E  + 
Sbjct: 414 -------------------FELSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHL 545
             +LSS  RL  ++K+E+ +   +    RR+ ++E +    + +++ +  E + V +S  
Sbjct: 455 ERLLSSERRLNTLVKKEIQADALKYGDDRRSPLIERIEAKALTEKELMPSETVTVVLSTQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        AQ    K  SG     ++F+T     S   S +F  + G  Y   V  
Sbjct: 515 GWVRSAKGLDVDAQALNYK--SG-----DEFLTKAQGRSNQ-SCIFIDASGRAYSLDVHS 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ L      NQ E +  +     D+   ++ Y++ ++ HG     K SD 
Sbjct: 567 LP--SARSQGEPLTG--RFNQNENVPFVCALIGDD---DDRYLI-SSDHGYGFIAKFSDI 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFA---GRN 720
              N++GK  + L    +++  +  T  +D   L  +  G+ + FP++++   +   G  
Sbjct: 619 NSRNKNGKTLINLTPNAQLMPPKKMTAADDDWCLTISNEGRLLLFPVNSLPSLSKGKGNR 678

Query: 721 SVGVRGISLAKGDQVISM--------AIVLHA 744
            + +      K ++ ++M        ++ LHA
Sbjct: 679 MLNIISAKATKREEFVTMLEIIPQASSVTLHA 710


>gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 747

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 367/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E + GPD+PT A +I     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R     A+ ++  L+  T L+  +  ++N++ L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDG-RPQVKNLRQLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTH-QVAFLDSEGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATEV 668


>gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901]
 gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901]
          Length = 748

 Score =  360 bits (924), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 261/736 (35%), Positives = 387/736 (52%), Gaps = 98/736 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ + KY K AR  G+V+GK+
Sbjct: 21  EKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKASAKYKKSARTVGDVIGKF 80

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE RL      LL
Sbjct: 81  HPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQD-DPKSFAAMRYTEARLSAFTEVLL 139

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L + TV++ PN+DG+  EP VL AR P VL+NG  GIAVGMAT+IP HNL EVVD  +
Sbjct: 140 SELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNGTTGIAVGMATDIPPHNLREVVDATI 199

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +++NPD D   L E I GPD PT A +I  +  ++  Y TGRGS+ +R V    K  GD
Sbjct: 200 HLLENPDADNAQLCEFIPGPDMPTDAEIITPKADLQKVYETGRGSMKMRAV--WRKEEGD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD- 321
              IV+T +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    ++ + R    D 
Sbjct: 258 ---IVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPIRLVIVPRSNRIDQ 314

Query: 322 -VILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ ++G +P   +L  IL+ +++FR   V RR ++ L+
Sbjct: 315 EAVMNHLFATTDLERSYRINLNMIGIDG-RPGVKSLREILQDWLSFRMVTVRRRLQHRLD 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
               R H+L GL IA  NLDEV+ IIR   +P   +++LM+R                  
Sbjct: 374 WVERRLHLLDGLLIAFLNLDEVIHIIRTEDHP---KQKLMER------------------ 412

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q   IL+ RL +L  L    IR+E   L  E  E   IL S  RL 
Sbjct: 413 --------FELSEDQANYILDTRLRQLARLEEMKIRDEQQKLEKERDELQKILDSARRLK 464

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+ELL+V DE    RR+ +VE        + + I  E + V +S  G++        
Sbjct: 465 TLIKKELLAVVDEFGDARRSPMVERSEAQAFSETELISSEPVTVVLSEKGWI-------- 516

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS-P 611
               R  KG     S +  +  D         +  + L   S G  Y      LP  + P
Sbjct: 517 ----RSAKGHDIDPSALSYKAGDSFRVAARGKSSQATLLLDSTGRSYA-----LPTHTLP 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLY-------VVFATKHGNVRRNKLSD 664
            ARG          QGE +T  +  P   + +  L        V+ A+  G      LSD
Sbjct: 568 SARG----------QGEPVTGRL-NPPSGAVFEGLLMGDDTQKVLLASDAGYGFIASLSD 616

Query: 665 FIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               NRSGK  + + +   +L+ +    T  + +   +  G+ + FP+S +   A     
Sbjct: 617 LYTKNRSGKAMLSVPAGGRVLAPQLLETTDASWLAAFSNEGRLLAFPVSELPELA----- 671

Query: 723 GVRGISLAKGDQVISM 738
             RG    KG+++I++
Sbjct: 672 --RG----KGNKIINI 681


>gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
 gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
          Length = 752

 Score =  360 bits (924), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 252/741 (34%), Positives = 395/741 (53%), Gaps = 74/741 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A ++  R  I   Y +GRGSI +R
Sbjct: 190 HNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+S +  +VN++ L+G +P+   L  IL  ++ FR  
Sbjct: 305 VIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDG-RPQLKNLRTILVEWLEFRTN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A   L++R       
Sbjct: 364 TVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA---LIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   ILE RL +L  L    IR E + L  E  + 
Sbjct: 414 -------------------FELTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S ++L  +++ EL+   +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++   +   S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+D++    LYVV A+  G     K
Sbjct: 563 AAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDDDA----LYVV-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLT-TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +  ++++      +E D L   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVIS 737
            G   +GV G  +A  ++ ++
Sbjct: 675 KGNKIIGVPGDRVASREEFVT 695


>gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 751

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 244/738 (33%), Positives = 389/738 (52%), Gaps = 79/738 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVDF+PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV D  V ++DNP + LD ++ II+GPDFPT A +I  +  I+  Y TGRGSI +
Sbjct: 186 PHNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RATWHKEDG-----EIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ +L  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLTEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   ++ LM R       
Sbjct: 361 TVTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEP---KQVLMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L    ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + +    E + V +S +
Sbjct: 452 ELILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D         ++  V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPAGLSYKAGDKYLAHACGKSNQPVIFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++  PE +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLTLPAGATIEQVIMEPEKQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  E  ++   +L++ T  G+ + FP+          
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPEKLSESASLLVSLTSAGRMLIFPVR--------- 662

Query: 721 SVGVRGISLAKGDQVISM 738
              +  +S  KG+++IS+
Sbjct: 663 --DLPALSKGKGNKIISI 678


>gi|331678180|ref|ZP_08378855.1| DNA gyrase subunit A [Escherichia coli H591]
 gi|331074640|gb|EGI45960.1| DNA gyrase subunit A [Escherichia coli H591]
          Length = 542

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 329/573 (57%), Gaps = 69/573 (12%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           MVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN+D +
Sbjct: 1   MVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPI 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMYLSEV 452
           + +IR +P P  A+  L+   W   ++  +++   D +          G  DG  YL+E 
Sbjct: 61  IELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 120

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V+++ 
Sbjct: 121 QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 180

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   ++
Sbjct: 181 GDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK 240

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           +EDF+  L + +TH  +L FSS G VY  KV++LP  +  ARG+ ++N+L L Q ERIT 
Sbjct: 241 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  E E     + V  AT +G V++  L++F ++  +GK+A+KL   DE++ V+  + 
Sbjct: 301 ILPVTEFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 357

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E++++L +  G+ VRF  S++R   G N+ GVRGI L +GD+V+S+ +            
Sbjct: 358 EDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVP----------- 405

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                         GD   +T+ +N                             G+GKRT
Sbjct: 406 -------------RGDGAILTATQN-----------------------------GYGKRT 423

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  ++   +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I
Sbjct: 424 AVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 481

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 482 VGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 512


>gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999]
          Length = 788

 Score =  360 bits (923), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 242/747 (32%), Positives = 392/747 (52%), Gaps = 73/747 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M  +G+  N KY 
Sbjct: 9   QDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLGLSANAKYK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ ++ R  L++GQGN+G+ D DP   AA RY
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPD-DPKSFAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL +LG+ T D+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+I
Sbjct: 128 TEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIAVGMATDI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ + C  ++DN   +L  L+E ++GPD+PT A +I  +  I+  Y TGRGSI 
Sbjct: 188 PPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYETGRGSIK 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V   E       ++++T +P+Q +   +LE+IA  ++ K++  ++DLRDESD +   
Sbjct: 248 MRAVYTEENG-----EVIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDESDHENPT 302

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFR 365
            ++   R    D+  ++  L+  T L+  +  ++NM+ L+G +P+   L  IL  ++ FR
Sbjct: 303 RLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDG-RPQVKDLKSILSEWLVFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   ++ELM R     
Sbjct: 362 RDTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEP---KQELMAR----- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q  AILEL+L  L  L    I+ E + L  E  
Sbjct: 414 ---------------------FGLSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERD 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
                L S  R+  +IK+EL++  ++    RR+ IV+      + +++ +  E + V +S
Sbjct: 453 ALQLTLGSDRRMKTLIKKELMADAEKYGDDRRSPIVQRGESKALSEKELVPSEPVTVVIS 512

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+ +        A     KG       D+ ++      S   +V FF S G  +    
Sbjct: 513 AKGWARCAKGHDVDAPNLSYKG-------DDSYLASAKGRSNQPAV-FFDSSGRTFSCDA 564

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP  S +++G+ L    ++  GE+   ++   E +        + A+  G       +
Sbjct: 565 HTLP--SARSQGEPLTGRFNMVSGEQFEHVIMANESQK------FLMASDAGYGFVGSFA 616

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDI-----LLTTKLGQCVRFPISAIRVFAG 718
           D +  N++GK  + L S  ++L   T    NDI     L  +  G+ + FP+  +     
Sbjct: 617 DMLSKNKAGKAYLSLPSAAKVL---TPVLVNDIETDRCLAISNEGRMLLFPLRDLPSLGK 673

Query: 719 RNSVGVRGISLAKGDQ----VISMAIV 741
                +  I  AK       ++++AIV
Sbjct: 674 GKGNKIINIPSAKAKTREEFIVALAIV 700


>gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
 gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
          Length = 752

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 243/742 (32%), Positives = 387/742 (52%), Gaps = 81/742 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI    + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V +IDNP   LD L+ +++GPD+PT A +I  +  I+  Y  GRGS+ +
Sbjct: 186 PHNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   +K  G   +IV+T +P+Q + + ++ +IA+ +  K++  + D+RDE+D +   R
Sbjct: 246 RAV--WKKEDG---EIVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHESPIR 300

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           +VI  +      D ++  L+  T L+  + V  NM+ L+  KP   +L+ IL  ++ FR 
Sbjct: 301 IVIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDN-KPAVKSLVEILTEWLQFRR 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  N+DEV++IIR   N +  ++ L+ R      
Sbjct: 360 TTVTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIR---NEDEPKQVLIAR------ 410

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++ Q  AIL LRL  L  L   +++ E + L  E   
Sbjct: 411 --------------------FNLTDEQAEAILNLRLRHLAKLEEHELQAEKDRLEEERDS 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  RL G+IK+E+        +PR + +VE      + + D    E + V +S 
Sbjct: 451 LQLTLGSERRLNGLIKKEIQQDAKTYTSPRLSPLVERAEAKAISESDMTPAEPVTVILSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYK 600
           +G+V            R  KG    V        D ++      ++ + +F  S G  Y 
Sbjct: 511 MGWV------------RCAKGHDIDVQNISYKAGDKYLAHAYGKSNQAAVFIDSTGRSYA 558

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   L+L  G  +  ++   E++       ++ A+  G     
Sbjct: 559 LDPLTLP--SARSQGEPLTGKLTLPAGASVEQVLIETENQP------LLMASDAGYGFIC 610

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGR 719
           K  D +  N++GK  + L     +L     T E  +L+  T  G+ + FP   +   A  
Sbjct: 611 KFEDLVARNKAGKALISLPENARVLPPLKLTNETALLVALTSAGRMLIFPAKDLPSLAK- 669

Query: 720 NSVGVRGISLAKGDQVISMAIV 741
                      KG++++++  V
Sbjct: 670 ----------GKGNKIVTIPAV 681


>gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 751

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 408/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLSEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDE-ILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L    + IL      +E N +   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKALLSLPGGAKVILPRPVADRELNWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 751

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 257/788 (32%), Positives = 408/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLSEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L    +++        ++N +   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKALLSLPGGAKVILPRPVADREQNWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVITQGATL--------VLQAGKRTLSLRPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
 gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
          Length = 749

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 216/552 (39%), Positives = 317/552 (57%), Gaps = 57/552 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GK
Sbjct: 15  VEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSARTVGDVIGK 74

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           YHPHG++A Y+A+  MAQD++ R  L++GQGN+GS D DP   AA RYTE RL   A  L
Sbjct: 75  YHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSAD-DPKSFAAMRYTESRLTGYAKTL 133

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L +L + TV++  N+DG+ QEP  L AR PN+L+NGG GIAVGMATN+  HNLGEVV  C
Sbjct: 134 LAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNLGEVVAAC 193

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            A+I +P +  DALM+ I  PDFPTG  ++  R  I   Y TGRG++ +R   H+E  + 
Sbjct: 194 RALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATWHLEDGN- 252

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
               I++ ++PYQV+ + + E+IA+ ++ K++  + DLRDESD +    ++ + R    D
Sbjct: 253 ----IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRSNRVD 308

Query: 322 V--ILNQLYRYTSLQSLFS--VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++  L+  T L+  +S  +NM+ L+G +P+   L  IL+ ++ +REE V RR  + L
Sbjct: 309 HERLMQHLFATTDLEKRYSAQMNMIGLDG-RPQVKNLGQILREWLVYREETVRRRLNHRL 367

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           +   +R H+L GL IA  NLDE++RIIR    P   R  LM                   
Sbjct: 368 HAVNERLHILQGLLIAYLNLDEIIRIIRTEDEP---RPVLM------------------- 405

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   T  LSE Q  AIL  RL  L  L    IR E  +L  E +   ++L SR RL
Sbjct: 406 -------ATFALSEAQAEAILNTRLRHLARLEEIQIRAEQEALAAEQQHLHELLQSRERL 458

Query: 498 LGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I  EL +        RRT I+  E  + +++ +    E + + +S +G++       
Sbjct: 459 LTLIADELAADAATYGDARRTVIIEREAAVALDETELTPSEAVTLILSKMGWI------- 511

Query: 556 YRAQRRGGKGRS 567
                RGGKG +
Sbjct: 512 -----RGGKGHA 518


>gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 211/564 (37%), Positives = 318/564 (56%), Gaps = 51/564 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M Q+ +  
Sbjct: 9   AEPDSPAAIVDAPFETALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLSP 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  Y K AR+ GEV+GKYHPHG+ A+YDA+ R+AQ ++LR  L+EGQGNFG++DGD  AA
Sbjct: 69  DSAYKKSARVVGEVLGKYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGNIDGDNAAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL + A  L+  L + TVDF P Y+   +EPV+    +PN+L NG  GIAVGMA
Sbjct: 129 ARYTEARLTRTAISLMAGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGASGIAVGMA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRG 246
           TNIP+HN+ EV++  + VI+NP ++   LM+I++GPD  TG +I+     I  AY TGRG
Sbjct: 189 TNIPSHNVDEVIEATLEVIENPAVEHARLMQIMQGPDLATGGLIVDSPETISAAYETGRG 248

Query: 247 SIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           S  IR   H             IE+  G + Q++++EIPYQV K  ++E+IA+++ +K++
Sbjct: 249 SFRIRARFHAAEAESAADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIAQVIADKKV 308

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERF 352
             + D+RDESD Q   V++   R    +++   LYR T L++ F +NM  L+  + P   
Sbjct: 309 PILEDVRDESDEQIRIVLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLDATRTPMVM 368

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L+ ++A + +++ RRT++ L K  DR  +L G  IA  NLD V+ IIR    P  
Sbjct: 369 GLKELLQNWIASQIDILQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEIIRTEDEP-- 426

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             + +M   +                          L++ QT AIL +RL  L  L    
Sbjct: 427 --KPVMMAEFG-------------------------LTDRQTEAILNMRLRSLRKLEEMQ 459

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DT---PRRTRI--VEGLL 525
           +R E + L  E  E   +L S  R    +K++L +++ E   DT    RRT I   E  +
Sbjct: 460 LRQEKDDLLKEQDELQKLLESPVRQRTRLKRDLNALRKEYGKDTALGARRTTIDEAEPTV 519

Query: 526 DMEDEDCIVREDMVVTVSHLGYVK 549
           +   +  I +E   V +S  G+++
Sbjct: 520 EFSMDAMIEKEPTTVILSARGWIR 543


>gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
 gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
          Length = 749

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 226/685 (32%), Positives = 366/685 (53%), Gaps = 59/685 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +   + Y
Sbjct: 10  DKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQSY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++DGD  AA RYT
Sbjct: 70  AKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP
Sbjct: 130 EARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN+ E+ D  + +I +PD   + L + + GPDFPTG +++  +  I+ +Y  GRG   +
Sbjct: 190 PHNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEESYRIGRGFFRL 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E  S     IVVTEIPYQV K+ ++EK AEL+  +R+  + D++DES      V
Sbjct: 250 RSRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRIV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           ++   R    ++++  L++ T  +  F +N+  L+ G  P   +L   L+ ++  R+EV+
Sbjct: 310 LVPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLVHRQEVL 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ Y L++   R  +L G  IA  NLDEV++IIR    P   +R+L+ R         
Sbjct: 370 IRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEP---KRKLINR--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  AIL +RL  L  L   +IR E  +L  E ++  +
Sbjct: 418 -----------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFETLKAEKEKLQN 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL---LDMEDEDCIVREDMVVT 541
           +L+S  +   I+ +E+  V++          RRT   E     LD   +  I +E + V 
Sbjct: 461 LLASPIKQWKIVSEEIKKVRNTFGPETLLGKRRTTFEEAPRHDLDDIQQAMIEKEPVTVV 520

Query: 542 VSHLGYVKRVP--LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +S  G+++ +   L+ Y+A          +  ++ D +   F   T   ++  S+ G  +
Sbjct: 521 ISEKGWMRALKGHLNDYKA----------LSFKEGDSLKLAFPAFTTDKIVLISTGGKFF 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP G  +  G+ +  ++ ++    + T      +E       ++  +  GN   
Sbjct: 571 ALGANSLPGG--RGHGEPIRLLVDMDDEHDVLTAFVHHAEEK------LLLVSSQGNGFI 622

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEI 684
              ++ I   R GK  M + S D++
Sbjct: 623 VPAAEVIANTRKGKQVMNVKSPDKV 647


>gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
 gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
          Length = 758

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 383/714 (53%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A I+  +  I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E  SG   +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTVE--SG---EIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKTLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKV---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I  E N L  E ++ 
Sbjct: 414 -------------------FSLTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IV+      + +++    E + V +S  
Sbjct: 455 EQLLGSERRLKTLIKKELIQDAETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG     +       D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   E+E  +     + AT  G      
Sbjct: 563 DSHTLP--SARSQGEPITTRFNMAPGETMQHVI-MGEEEQCY-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L +  + L+ +    T+E  +L  T  G+ + F ++A+
Sbjct: 615 YNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLAAL 668


>gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ]
 gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ]
          Length = 752

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 255/788 (32%), Positives = 405/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPDFPT A ++  R  +   Y +GRG++ +R
Sbjct: 190 HNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYESGRGTLRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +  +E   GD   +V+T +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 ALYRVE--DGD---VVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L++ + VN+  + L+G +P+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDG-RPQVKNLRALLSEWLEFRVR 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL IA  NLDEV+RIIR    P+     L++R       
Sbjct: 364 TVRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPKPV---LIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   IL+ RL +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEAQADYILDTRLRQLARLEEMKIRGEQEALAKERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
           L +L S +RL  ++++ELL+  +     RR+ IVE      + + + +  E + V +S  
Sbjct: 455 LGLLGSEARLKKLVRKELLADAETYGDARRSPIVERAEARALSETELLPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     + +  +  D         ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDPAALSYKSGDTFKAAAQGRSNQYAVFIDSSGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L+   G     ++  P+DE+    LYV+ A+  G     K
Sbjct: 563 AAHSLP--SARGQGEPLTGRLAPPPGAGFECVL-LPDDEA----LYVL-ASDAGYGFVAK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L +   +++           L   T  G+ + F ++ +   A  
Sbjct: 615 GEDLQAKNKAGKALLSLPAGARVMAPRPLGDAGSDWLAAVTSEGRLLLFRVAELPQLAKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   + + G  +A  ++ +   +VL   A           + A +R +S    ++   +
Sbjct: 675 KGNRIIAIPGARVASREEYLCDFVVLSERATL--------QLQAGKRTLSLKPADLEHYR 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGGRGN 734


>gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica]
          Length = 764

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 235/673 (34%), Positives = 356/673 (52%), Gaps = 69/673 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 10  QGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELGLSAAAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD+ PN+DG+  EP+VL AR P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNGVTGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++D P  +LD L+E++  PD+PT A +I  +  I   Y TGRGSI +
Sbjct: 189 PHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYKTGRGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E   GD   IV+T +P+Q + A +LE+IA  +  K++  +ADLRDESD +    
Sbjct: 249 RAVYTEE--HGD---IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     A+ ++  L+  T L+  + V  NM+ L+G +P+   L  IL  ++ FR 
Sbjct: 304 IVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDG-RPQVKDLRSILSEWLTFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR ++ L+K   R H+L GL  A  N+DEV+ IIR    P+     LM+R      
Sbjct: 363 ETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKPKPV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                DL D                 Q  AILEL+L  L  L    IR E + L  E  +
Sbjct: 414 ----FDLTD----------------TQAEAILELKLRHLAKLEEFKIRGEQDELAKERDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSH 544
               L S  R+  ++K+E+    D     RR+ ++E +    + ++D I  E + V +S 
Sbjct: 454 LEQTLGSDRRMSTLLKKEIQEAADMYGDDRRSPVIERVEAKALSEKDLIPSESVTVVLSD 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R GKG      G+  R  D         ++   +F  S G  + 
Sbjct: 514 KGWA------------RVGKGHDIDVEGLNYRAGDEYKASAKGKSNQPAVFLDSAGRAFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +    +L  G     ++         +N  ++ A+  G     
Sbjct: 562 TDAHSLP--SARSQGEPMTGRFNLTTGANFEHVV------MGEDNQVLLMASDAGYGFIT 613

Query: 661 KLSDFIQINRSGK 673
              D +  N++GK
Sbjct: 614 DFKDLVSKNKNGK 626


>gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
 gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
          Length = 753

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 256/743 (34%), Positives = 392/743 (52%), Gaps = 84/743 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+E    SVS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++ + 
Sbjct: 9   EEDE----SVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKASA 64

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA
Sbjct: 65  KYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL A+ PNVL+NG  GIAVGMA
Sbjct: 124 MRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNGTTGIAVGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HNL EVV   + +++ P   LD L E I+ PDFPT A +I  R  IK  Y +GRG
Sbjct: 184 TDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEIKAFYRSGRG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R  +H  K  G    I+V  +P+QV+ A +LE+IA  ++ K++  + DLRDESD +
Sbjct: 244 SIKMR--AHWRKEDG---AIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVNDLRDESDHE 298

Query: 307 G-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+VI  K      D ++  L+  T L+  + +N+  + N  +P   +L  IL+ ++ 
Sbjct: 299 NPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSLDAILREWLE 358

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR E V RR +Y L K   R H+L G  IA  N+DEV+ IIR    P+     LMQR   
Sbjct: 359 FRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPKPV---LMQR--- 412

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  A+LEL+L  L  L    IR E + L  E
Sbjct: 413 -----------------------FGLSDAQAEAVLELKLRNLAKLEEMKIRGEQDELEKE 449

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVT 541
            ++    L S +R+  +IK+ELL+V ++    R + +V  E      +++ +  E + V 
Sbjct: 450 REQLELTLGSTARMRTLIKKELLAVAEQFGDERSSPLVAREEAKAFSEKELMSTEPITVV 509

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +S  G++            R  KG     + +  +  D         ++ S +   S G 
Sbjct: 510 LSEKGWI------------RAAKGHDIDPTSLSYKAGDNFNLAAAGRSNQSAILIDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP  S + +G+ +   +S   G     ++   E +       ++ A+  G  
Sbjct: 558 AYTLPTHNLP--SARGQGEPVTGRISPPPGVGFKALLLGDERQK------ILLASDAGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRV 715
              +L   +  N++GK  + L +  E+L        +D+L+   +  G+ + FP++ +  
Sbjct: 610 FVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDLLVAAVSTEGRLLVFPLADLPE 669

Query: 716 FAGRNSVGVRGISLAKGDQVISM 738
            A       RG    KG++++S+
Sbjct: 670 LA-------RG----KGNKILSV 681


>gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200]
          Length = 758

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 383/714 (53%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A I+  +  I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E  SG   +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTVE--SG---EIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKTLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKV---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I  E N L  E ++ 
Sbjct: 414 -------------------FSLTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IV+      + +++    E + V +S  
Sbjct: 455 EQLLGSERRLKTLIKKELIQDGETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG     +       D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   E+E  +     + AT  G      
Sbjct: 563 DSHTLP--SARSQGEPITTRFNMAPGETMQHVL-MGEEEQCY-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L +  + L+ +    T+E  +L  T  G+ + F ++A+
Sbjct: 615 YNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLAAL 668


>gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 747

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 242/710 (34%), Positives = 368/710 (51%), Gaps = 63/710 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQIPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ TVD+ PN+DG+ +EP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V  CV ++D+PD  +  L E +RGPD+PT A +I   + ++  Y  G GS  +R
Sbjct: 190 HNLNEIVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDLRAMYENGTGS--VR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  +K +G+    VVT +PYQV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 248 ARATWQKENGN---FVVTALPYQVSPSKVIEQIAAQMRTKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  + VN+  + L+G KP    L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDG-KPAVKNLRTLLDEWLTFRTD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            VVRR K+   K   R H+L GL +A  NLDEV+RIIR    P  A   L+ R       
Sbjct: 364 TVVRRLKHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+  Q   ILE RL +L  L    IR E + L  E++  
Sbjct: 414 -------------------FGLTGEQADYILETRLRQLARLEEMKIRGEQDELARELERI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           +  L S++RL  ++K ELL+   +    RR+ +V  E    +++ + +  E + V +S  
Sbjct: 455 VATLDSKARLKKLVKDELLADAKKFGDARRSPLVLREAAHAIDETELVPSEPVTVVLSQK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +      +G+  R+ D +       +   V F  S G  Y      
Sbjct: 515 GWV--------RAAKGHDVDAAGLSYREGDALLGAVRARSTWQVAFLDSHGRSYSTPAHS 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L    S   G     +       S  N+   V A+ HG     +  + 
Sbjct: 567 LP--SARGNGEPLTGRFSPASGASFLALA------SGENDTRFVLASSHGYGFVTRFENL 618

Query: 666 IQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAI 713
              N++GK  + L +   +L  +V    + + I+  T  G  +  P + +
Sbjct: 619 TGRNKAGKALINLATGANVLQPAVVGNPETDRIVAVTSAGHLLAIPAAEL 668


>gi|71894081|ref|YP_278189.1| DNA topoisomerase IV subunit A [Mycoplasma synoviae 53]
 gi|71850869|gb|AAZ43478.1| topoisomerase IV subunit A [Mycoplasma synoviae 53]
          Length = 860

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 237/755 (31%), Positives = 396/755 (52%), Gaps = 59/755 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E  EK IT  S+   M+  + TY+  VI  RAIPD+RDGLKPVHRRIL+ M  +G+
Sbjct: 1   MSKKEIIEKIITK-SVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGL 59

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++KK+ K ARI G+V+GKYHPHG+ ++Y+A+  +AQ W + + L+   GN GS+D D  
Sbjct: 60  DFDKKFKKSARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQ 119

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A++++ D+ K TV F PN+D S  EP+VL + +PN+LVNG  GIA+G
Sbjct: 120 AAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIG 179

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT +P HNLGE++D CV  I +P      L   + GPDFPTG VI G  GI  A   GR
Sbjct: 180 MATEMPPHNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGGVIKGTKGIAEALENGR 239

Query: 246 GSI-VIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
                I+     E  T G  + I +TEIPY V K  ++ +I  +++ K I  I +++D S
Sbjct: 240 NEKNKIKLFCKYEIYTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRS 299

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G  ++I L   ++ + ILN L+  T +Q  +S N + ++   P    L  ++ +++A
Sbjct: 300 DRDGINILITLDINSNEESILNYLFSKTQMQITYSYNNIVIDNNSPTLMNLENLISSYIA 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             + V      Y LNKA+ R  ++ G         +V+ +IR +   +            
Sbjct: 360 HIKNVKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGV--------- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              + +LI + +              +++Q  +I ELRL +L+   ++    E     +E
Sbjct: 411 ---VNNLIQVFN-------------FTKLQAESIAELRLYKLSQTDKEIYLKE----KVE 450

Query: 484 IKECLDI----LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-IVREDM 538
           +KE ++I    L++       +  E+ ++K E   PR+T+I E   ++      +V+E++
Sbjct: 451 VKETINIIENLLNNEKEFNNFLINEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEI 510

Query: 539 V-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V++S  G++KR    V               ++++D +     V+T   +L F++LG 
Sbjct: 511 INVSISKNGFIKRFSDKVLENNEW-----KNYALKEKDNLVFFSKVNTVNFLLCFTNLGN 565

Query: 598 VYKEKVWRLPIGSPQARGKAL---INILS--LNQGERITTIMPFPEDESSWNNLYVVFAT 652
                ++++     + + K L   IN+ +  +   E I +++   + E    NL V+  T
Sbjct: 566 YVIVAIYQIQ----EVKWKDLGNNINLFASDIRPDEEIVSVIEVSDFEE---NLSVMLGT 618

Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           K G  +R  L DF+ ++R  K   AM L+  D ++  +    ++ ++  T+     +F  
Sbjct: 619 KQGYFKRVMLKDFL-VSRFTKKYTAMPLNEDDYLIKAKLTNLDSYLVAITENSIISKFSE 677

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           S I +F    + G + I  + GD++ +  I  + D
Sbjct: 678 SEI-MFYSTKARGSKAIYFSVGDKLSNFTIASYGD 711


>gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583]
 gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583]
          Length = 745

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 324/571 (56%), Gaps = 57/571 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD+ +E+ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +  
Sbjct: 2   SDKIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  LI+GQGNFG++DGD  AA
Sbjct: 62  AQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  GIAVGMA
Sbjct: 122 MRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
           T+IP HN+ E+ D  + +I + D   + L + + GPDFPTG +++  +  I+ AY TGRG
Sbjct: 182 TSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R   H E  + +   IV+TEIPYQ+ K+ ++EK AEL+  +R+  + D++DES   
Sbjct: 242 SFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDESAED 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V+    R    ++++  L++ T  +  F +N+  L  G  P   +L   L+ ++  R
Sbjct: 302 VRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWLEHR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EV++RR+ + L +   R  +L G  IA  NLD+V++IIR    P   ++EL+       
Sbjct: 362 QEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEP---KKELLTH----- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E Q  AIL +RL  L  L   +IR E  +L  E +
Sbjct: 414 ---------------------FQLTENQAEAILNMRLRSLRKLEEFEIRKEFENLKAEEE 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDEL--------------DTPRRTRIVEGLLDMED-- 529
           +   +L S  +   +I +E+  V+ +               D+P+R        D++D  
Sbjct: 453 KLQALLGSNVKQWQMISEEIKKVRKKFAPETSLGKRRTTFEDSPKR--------DVDDIY 504

Query: 530 EDCIVREDMVVTVSHLGYVKRVP--LSVYRA 558
           +  I +E + + +S  G+++ +   L+ Y+A
Sbjct: 505 QAMIEKEPVTIVISEKGWMRALKGHLNDYKA 535


>gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
 gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
          Length = 750

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 344/612 (56%), Gaps = 50/612 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  + +      + + YL YA++ I  R++PD+RDGLKPVHRR+L+ M  + ++   
Sbjct: 6   ELPEDSVRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLRLDPAS 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQ +SLR  L++GQGNFG+VDGD  AA R
Sbjct: 66  GYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNVDGDNAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL  AA  L+  L + TVDFRP Y+G  +EP +    +PN+L NG  GIAVGMAT+
Sbjct: 126 YTEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGASGIAVGMATS 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSI 248
           IP HN+ E++D  V +ID P+ +   L++ ++GPDFPTG V++     I  AYATGRG+ 
Sbjct: 186 IPPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAEAYATGRGAF 245

Query: 249 VIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +R  + IEK    G    +VV++IPYQV K+ ++E+IAEL+ +K++  +AD+RDESD +
Sbjct: 246 RVR--AKIEKVDEKGGGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADVRDESDEE 303

Query: 307 GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAF 364
             R+V+E + R   AD+++  L+R T L+   S+N+  L+  + P   +L   L A++  
Sbjct: 304 -IRIVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQALAAWLKH 362

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + EV++RR+++ L K  DR  +L G  I   NLD V++IIR    P    + +M   +  
Sbjct: 363 QFEVLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEP----KPVMMAEFG- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q  AIL +RL  L  L   ++  E  +L  E 
Sbjct: 418 ------------------------LTDRQAEAILNMRLRSLRRLEEMELTRERATLDAEG 453

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL--DMEDEDCIVRED 537
           KE   +++S +R    +K++L ++++          RRT + E     ++  E  + RE 
Sbjct: 454 KELEALIASPARQRTRMKRDLAALRERYGPETALGARRTLLSEAAPAREIPLEAMVEREP 513

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+++ +   +  A       ++ V  ++ D         T   +L  +  G 
Sbjct: 514 VTVILSQRGWIRAMKGHLDEA------AQAAVKFKEGDGPAHAIRAQTTDRILLATDQGR 567

Query: 598 VYKEKVWRLPIG 609
            Y     +LP G
Sbjct: 568 FYTLPADKLPGG 579


>gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
 gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
          Length = 771

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 243/743 (32%), Positives = 399/743 (53%), Gaps = 67/743 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    +N+YL Y++NVI  RA+P + DG+KPV RRI++ M ++G+    K+VK
Sbjct: 13  EGIEQMPLERFAENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAMAKLGIGPKAKHVK 72

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  GEV+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G V+ DP   AA RYT
Sbjct: 73  SARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDVE-DPKSFAAMRYT 131

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL DL    VDF PN+DG+ +EP  L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 132 ESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGTTGIAVGMATDIP 191

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV +  V +++NP+  ++ LM+ ++GPD+P GA +I  ++ +   Y TG+G +  
Sbjct: 192 PHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLLKMYETGKGIVRQ 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +EK     E IVV+ +P+QV+   + ++IA+L+ +K++  ++DL + SD      
Sbjct: 252 RAVYKVEK-----EGIVVSALPFQVSGGQVEKQIADLMAKKKLPMVSDLINASDHNNPCR 306

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           +I + R      D ++N L+  T L+S + VN+  + L+G KP+   L  IL  ++ FR+
Sbjct: 307 LIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDG-KPQVKNLKQILSEWLVFRQ 365

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V +R    L+    R H+L GL +   NLDEV+RIIR   NP+    +L++R      
Sbjct: 366 QTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENPKA---KLIER------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q   ILE +L +L  L    I+ E   L  E K+
Sbjct: 417 --------------------FNLTEAQVEYILETKLRQLARLEEMKIKEEQEKLLAEKKK 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L S++RL   IK+E+L+        RR  +VE    +   ++D +    + V +S 
Sbjct: 457 LESLLGSQARLKTFIKKEILADVKLYGDERRCPVVERSEAVAFSEDDLMPSTPVTVILSK 516

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G+V++   S Y A       R+G      D   D     ++   +F ++LG  Y   + 
Sbjct: 517 MGWVRQA--SEYNADAEHMTYRAG------DGFKDKASGRSNQQAVFITNLGRAYSVDIR 568

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L + ++L QGE    ++         +N Y + A+        K  D
Sbjct: 569 ELP--SARGQGEPLSSKVNLQQGEFAEYVI------IGQSNDYFLLASDKAYGFICKYED 620

Query: 665 FIQINRSGKIAMKLDSRDEILS-VETCTQENDIL-LTTKLGQCVRFPISAIRVFA---GR 719
            +   + G+  + LD+  ++ + ++   + +D+L + ++ G+ + +    + V     G 
Sbjct: 621 ILTRLKGGRALVSLDADAKLFAPIKLSDKSSDLLAVASRQGKLLIYKAEDLPVLPRGKGN 680

Query: 720 NSVGVRGISLAKG-DQVISMAIV 741
             + + G  L  G D V ++A++
Sbjct: 681 KLISIAGAKLDMGIDGVAAVAVL 703


>gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 233/648 (35%), Positives = 356/648 (54%), Gaps = 68/648 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A ++  R  I   Y +GRGSI +R
Sbjct: 190 HNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRVE--DGD---IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R     AD ++  L+  T L+S +  ++N++ L+G +P+   L  IL  ++ FR  
Sbjct: 305 VIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDG-RPQLKNLRTILVEWLEFRTH 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A   L+ R       
Sbjct: 364 TVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q   ILE RL +L  L    IR E + L  E  + 
Sbjct: 414 -------------------FGLTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S ++L  +++ EL+   +     RR+ IVE      + + + +  E + V +S  
Sbjct: 455 QALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVERAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     +G+  +  D         ++   +   S G  Y  
Sbjct: 515 GWI------------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
               LP  S + +G+ L   L+   G     ++  PED++    LYVV
Sbjct: 563 AAHSLP--SARGQGEPLTGRLTPPPGATFDCVL-LPEDDA----LYVV 603


>gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse]
 gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse]
          Length = 749

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 226/668 (33%), Positives = 365/668 (54%), Gaps = 59/668 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +   + Y
Sbjct: 10  DKEHIEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPEQSY 69

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++DGD  AA RYT
Sbjct: 70  AKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYT 129

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  GIAVGMAT+IP
Sbjct: 130 EARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIP 189

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HN  E+ D  + +I +PD + + L + + GPDFPTG +++  +  I+ +Y  GRG   +
Sbjct: 190 PHNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEESYRIGRGFFRL 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E  S     I+VTEIPYQV K+ ++EK AEL+  +R+  + D+ DES      V
Sbjct: 250 RSRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIV 309

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           ++   R    ++++  L++ T  +  F +N+  L+ G  P   +L   L+ ++  R++V+
Sbjct: 310 LVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESLQQWLEHRQQVL 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ Y LN+   R  +L G  IA  NLDEV++IIR    P+                K+
Sbjct: 370 IRRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEPK----------------KE 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI+  +             L+E Q  AIL +RL  L  L   +IR E ++L  + ++  +
Sbjct: 414 LINCFE-------------LTENQAEAILNMRLRSLHKLEEFEIRKEFDALKADKEKLQN 460

Query: 490 ILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIVEG---LLDMEDEDCIVREDMVVT 541
           +L+S ++   +I +E+  V+     + L   RRT   E     +D   +  I +E + + 
Sbjct: 461 LLASSTKQWKMISEEIRKVRKIFGPETLLGKRRTTFEEAPRHAIDDIHQAMIEKEPVTIV 520

Query: 542 VSHLGYVK--RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +S  G+++  R  LS Y+A          +  ++ D +   F   T   +   S+ G  +
Sbjct: 521 ISEKGWMRALRGHLSDYKA----------LSFKEGDCLKLAFPAFTTDKITMISTGGKFF 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-----SSWNNLYVVFATKH 654
                 LP G  +  G+ +  ++ ++    I T      +E     SS+ N ++V AT+ 
Sbjct: 571 CINANDLPGG--RGHGEPIRILVDMDDEHDILTAFVHNVEEKLLLISSYGNGFIVPATEV 628

Query: 655 -GNVRRNK 661
             N R+ K
Sbjct: 629 IANTRKGK 636


>gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
 gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
          Length = 768

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 240/713 (33%), Positives = 378/713 (53%), Gaps = 73/713 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 10  QGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSAAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ T D+ PN+DG+  EP+VL AR P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++DNP  +L+ L+E ++ PD+PT A +I  R+ I+  Y TG+GSI +
Sbjct: 189 PHNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQTGKGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R +   E+  GD   IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAIYTEEQ--GD---IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     V  ++  L+  T L+  + V  NM+ LNG +P+   L  IL  ++ FR 
Sbjct: 304 IVIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNG-RPQVKDLKTILSEWLIFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+     LM+R      
Sbjct: 363 ETVRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKPKPV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 ++++Q  AILEL+L  L  L    IR E + L  E  +
Sbjct: 414 --------------------FGITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  R+  +IK+E+    +     RR+ ++E      + ++D I  E + V +S 
Sbjct: 454 LELTLGSERRMSTLIKKEIQEAAELYGDDRRSPVIERAEAKALSEKDLIPSEAVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R  KG     + +  R  D    L    ++  V+F  S G  + 
Sbjct: 514 KGWA------------RCAKGHDIDAAALSYRAGDEFKALAKGRSNQPVVFLDSSGRAFC 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP    Q  G+ +    +++ G     ++    D         + A+  G     
Sbjct: 562 TDAHSLPTARSQ--GEPMTGRFNMSTGVNFEHVVMGELDA------MFLMASDAGYGFVA 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPI 710
             +D +  N++GK  + L +  +++S   V   T +N + ++ + G+ + FP+
Sbjct: 614 SFADLVSKNKNGKALVSLSTGAQLISPIKVNDITTDNCLAISNE-GRMLMFPL 665


>gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
 gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
          Length = 747

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 245/699 (35%), Positives = 361/699 (51%), Gaps = 63/699 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 18  EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKYKKSARTVGDVLGKY 77

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D +P   AA RYTE RL + A  LL
Sbjct: 78  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-EPKSFAAMRYTEARLTRYAQLLL 136

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TV++ PN+DG+ +EP +L AR PN+L+NG  GIAVGMAT+IP HNL EVV  C+
Sbjct: 137 TELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDIPPHNLREVVAACI 196

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++D PD  +  L E I GPDFPT A +I     I+  Y  G G +  R     E+   D
Sbjct: 197 HLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLRQRAC--WERDGLD 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              IV+T +PYQV+ + +LE+IA  ++ K++  + DLRDESD      +I   R A  D 
Sbjct: 255 ---IVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPTRLIITPRSARVDA 311

Query: 323 --ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++  L+  T L+  + VN+  + L+  +P    L  IL  ++ FR E V RR ++ L+
Sbjct: 312 EPLMQHLFATTDLEKTYRVNLNVIGLDA-RPRVRNLREILTEWLRFRTETVCRRLQWRLD 370

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H+L G  IA  N+DEV+ IIR    P+     LM+R                  
Sbjct: 371 KVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPKLV---LMER------------------ 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q  AILELRL  L  L    I  E + L  E      IL+S +RL 
Sbjct: 410 --------FGLTERQAEAILELRLRHLAKLEEIKIHAEQDELLRERDRLRSILNSEARLK 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK EL     +   PR + +V+      + D + +  E + + +S  G+++       
Sbjct: 462 ALIKSELQEDAQKYGDPRCSPLVQRGSARALSDTELVPSEPVTLVLSQRGWIRAAKGHDV 521

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            AQR   K   G          D  I  T+   +F  S G  Y      LP  S + +G+
Sbjct: 522 DAQRLSYKAGDG--------YRDAAIGRTNQQAVFLDSQGRAYSLPAHTLP--SARGQGE 571

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L   LSL  G   + ++   + +S W     + A+ HG     +L +    NR+GK  +
Sbjct: 572 PLTGRLSLPGGGEFSYVL-LGDPDSLW-----LLASDHGYGFITRLGNLYSKNRAGKAVL 625

Query: 677 KLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAI 713
            +    + L         ++ ++  T  G+ + FP+  +
Sbjct: 626 SVAGGAQPLKPARIYALAQDRLVAATTAGRLLVFPLQEL 664


>gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 751

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 260/788 (32%), Positives = 407/788 (51%), Gaps = 82/788 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD      +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHDNPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+S +  ++N++ L+G KP+   L  +L  ++ FR  
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQLKNLKTLLSEWLTFRIG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+    EL+ R       
Sbjct: 364 TVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---ELIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q   IL+ RL +L  L    +R+E ++L  E  + 
Sbjct: 414 -------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  
Sbjct: 455 QALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  +  D      I  ++   +F  S G  Y  
Sbjct: 515 GWV------------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   L    G     ++  PED++    LYV+ A+  G     K
Sbjct: 563 AAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI-ASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDE-ILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA-- 717
             D    N++GK  + L    + IL      +E N +   T  G+ + F +S +      
Sbjct: 615 GEDLQAKNKAGKALLSLPGGAKVILPRPVADRELNWLAAVTTEGRLLVFKVSDLPQLGKG 674

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K
Sbjct: 675 KGNKIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYK 726

Query: 777 NDSSVEGN 784
            +    GN
Sbjct: 727 GERGRRGN 734


>gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
 gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
          Length = 751

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 247/734 (33%), Positives = 390/734 (53%), Gaps = 89/734 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYAQILL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 AELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVQEIAQALI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +ID P+  LD L+E ++GPDFPT A +I  R  IK  Y TGRGSI +R + + E+ +  
Sbjct: 198 QLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRGSIRMRAIWNKEEAN-- 255

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  I DLRDES+ +    ++ + R    D+
Sbjct: 256 ---VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHENPTRLVIIPRSNRIDL 312

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             +++ L+  T L+  +  ++NM+ L+  +P    L+ IL  ++ +R + V RR  Y L+
Sbjct: 313 DQVMSHLFATTDLEKSYRINMNMIGLDN-RPSVKGLLTILSEWLVYRCDTVRRRLNYRLD 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
             + R H+L GL  A  N+D+V+ IIR                             DD+ 
Sbjct: 372 NVQRRLHILEGLLTAFLNIDKVIDIIRTE---------------------------DDAK 404

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             + +     LSE QT AILEL+L +L  L    +R+E      E+ +   +L S++   
Sbjct: 405 SVLIT--CFSLSESQTEAILELKLRQLAKLEEKKLRSEEAEFQQELAQLQMLLESKAAFN 462

Query: 499 GIIKQELLS----VKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            ++K+E+ +       + +  RR+ +++      M + D    E + V +S +G+V    
Sbjct: 463 QLLKKEIQADTAVCHHQQNHCRRSPLIQRDDAKAMNEHDIQPSEPVTVVLSKMGWV---- 518

Query: 553 LSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  KG     SG   +  D         ++   +F  S G  Y       P+
Sbjct: 519 --------RSAKGHDVDPSGFNYKAGDCFRTAAQGKSNQPAVFIDSTGRSYSLD----PL 566

Query: 609 GSPQARGKALINILSLNQGERIT-TIMPFPEDESSW-----NNLYVVFATKHGNVRRNKL 662
             P ARG          QGE +T   +   E    +     N+  ++ ++  G       
Sbjct: 567 TLPSARG----------QGEPLTGRFISSTEAVIEYVLMADNDQQLLLSSDAGYGFICHF 616

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNS 721
           SD I  NR+GK  M L S  +IL        +D+LL+   G+ + FP + + R+  G+  
Sbjct: 617 SDLITKNRAGKALMALPSNAKILPPLKLHGADDMLLSITAGRILMFPAADLPRLTKGK-- 674

Query: 722 VGVRGISLAKGDQV 735
            G + IS++K +++
Sbjct: 675 -GNKIISISKQERM 687


>gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908]
 gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908]
          Length = 758

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 243/730 (33%), Positives = 388/730 (53%), Gaps = 74/730 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLTSQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  C+ ++DNP  +L  +ME + GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADIVKIYTTGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +   R+
Sbjct: 250 AVYAVENG-----EIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHESPVRI 304

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VI  +      D ++  L+  T L+  F VN+  + LNG +P+   L+ IL  ++ +R +
Sbjct: 305 VIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNG-RPQVKGLLQILNEWLEYRFQ 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIR+  +P+    ELM R +N    
Sbjct: 364 TVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDPKA---ELMSR-YN---- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL+L+L  L  L    I+ E + L  E  + 
Sbjct: 416 ---------------------LSDKQADAILDLKLRHLAKLEEFKIKTEQSELEAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  R+  +IK+EL    +     RR+ ++E      + + +    E + V +S  
Sbjct: 455 QLLLSSDRRMKTLIKKELKQDAETYGDDRRSPLIERSESKALTEHELAPVEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG             D F+ S    ++   +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDAKALSYKAGDSFLCSATGRSNQPSVFIGSTGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP  S +++G+ +    +L+ GE +  ++   ED+      Y + A+  G      
Sbjct: 563 ETHTLP--SARSQGEPITTRFNLSPGEIMEHVLLGDEDK------YYLLASDAGYGFVGS 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA-- 717
             D I  N++GK  + L +  +++S +    ++   IL  T  G+ + F + A+   +  
Sbjct: 615 YKDMISRNKAGKALLTLPANSKVISPKLVDRSRPESILAITNEGRMLLFSMEALPQLSKG 674

Query: 718 -GRNSVGVRG 726
            G   +G+ G
Sbjct: 675 KGNKIIGIPG 684


>gi|289770512|ref|ZP_06529890.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
 gi|289700711|gb|EFD68140.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
          Length = 788

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 218/537 (40%), Positives = 320/537 (59%), Gaps = 39/537 (7%)

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+P
Sbjct: 145 LDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELP 203

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYT 331
           YQ N   + +KIA+LV++ ++  IAD+RDE S R G R+VI LKR A A V+LN LY++T
Sbjct: 204 YQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHT 263

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            LQS F  NM+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL 
Sbjct: 264 DLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLL 323

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+  +DEV+ +IR S   E AR  LM             DL++             + E
Sbjct: 324 KALDAIDEVIALIRRSDTVEIARGGLM-------------DLLE-------------IDE 357

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
           +Q  AILE++L RL  L R  I  E + L  +I E  +IL+S  R  GI+ +EL ++ ++
Sbjct: 358 IQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEK 417

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               R+T+++    DM  ED I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  +
Sbjct: 418 YGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKL 477

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +++D V   F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E I 
Sbjct: 478 KEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIA 537

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILS 686
            I    + E+     Y+V ATK G V++  L D+      G IA+ L      S DE++ 
Sbjct: 538 QIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIG 594

Query: 687 VETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            E  + E+D+LL +K  Q +RF  S   +R   GR + GV+G+S  +GD+++SM +V
Sbjct: 595 AELVSAEDDLLLISKKAQSIRFTASDDTLRPM-GRATSGVKGMSFREGDELLSMNVV 650


>gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
 gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
          Length = 765

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 237/673 (35%), Positives = 356/673 (52%), Gaps = 69/673 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 10  QGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELGLSAAAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNGITGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++D P  +LD L+E++  PD+PT A +I  +  I   Y TGRGSI +
Sbjct: 189 PHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYKTGRGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E+  GD   IV+T +P+Q +   +LE+IA  +  K++  IADLRDESD +    
Sbjct: 249 RAVYSEEQ--GD---IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDESDHENPTR 303

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     A+ ++  L+  T L+  + V  NM+ L+G +P+   L  IL  ++ FR 
Sbjct: 304 IVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDG-RPQVKDLRSILSEWLIFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+     LMQR      
Sbjct: 363 ETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPI---LMQR------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                DL D                +Q  AILEL+L  L  L    IR E + L  E  +
Sbjct: 414 ----FDLTD----------------IQAEAILELKLRHLAKLEEFKIRGEQDELAKERDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  R+  ++K+E+    +     RR+ ++E      + ++D I  E + V +S 
Sbjct: 454 LELTLGSDRRMSTLLKKEIQEAAEMYGDDRRSPVIERSEAKALNEKDLIPSESVTVVLSD 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R GKG      G+  R  D         ++   +F  S G  + 
Sbjct: 514 KGWA------------RVGKGHDLDAQGLSYRSGDAYRASARGKSNQPAVFLDSAGRAFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +    +L  G     ++   ED        ++ A+  G     
Sbjct: 562 TDAHSLP--SARSQGEPMTGRFNLTTGANFEHVV-MAEDSQ-----VLLMASDAGYGFIT 613

Query: 661 KLSDFIQINRSGK 673
              D +  N++GK
Sbjct: 614 DFKDLVSKNKNGK 626


>gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010]
 gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010]
          Length = 746

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 245/723 (33%), Positives = 383/723 (52%), Gaps = 65/723 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+
Sbjct: 13  LRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALSKHKKSARTVGD 72

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+GS+D DP   AA RYTE RL   
Sbjct: 73  VLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMD-DPKSFAAMRYTEARLAPY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +LG+ T D+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP HNL EV
Sbjct: 132 AQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMATDIPPHNLREV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V   + ++ +P + LD L+E I+GPDFPTGA +I  +  I+  Y TG GS+  R   + E
Sbjct: 192 VSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGSVKQRASYNKE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                  +I++  +PYQV+ A +LE+IA  +  K++  +ADLRDESD +    ++ + R 
Sbjct: 252 DG-----EIIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEHPVRLVIVPRS 306

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              D+  +++ L+  T L+    V  NM+ ++G +P+   L  +L  ++ +R E V RR 
Sbjct: 307 NRVDIDSLMSHLFATTDLERSHRVNMNMIGMDG-RPQVKNLRDMLIEWLGYRVETVRRRL 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L+K  DR HVL GL IA  N+DEV+ IIR   +P+     +M+R             
Sbjct: 366 QYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDPKAV---MMER------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          +++ Q  +ILELRL  L  L    IR E++ L  E K+   +LSS
Sbjct: 410 -------------FSITDRQAESILELRLRHLAKLEEMKIRGEMDELSKERKQLELLLSS 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +RL  +I++EL +  ++    RR++IVE      ++  + +  E + + +S  G+VK  
Sbjct: 457 DTRLKTLIRKELTADAEKFGDDRRSQIVERKASKALDATELLPTEPLTIVLSESGWVK-- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                 A +      + +  R  D         ++  ++F    G  Y      LP  S 
Sbjct: 515 ------AAKGHDVDPTSLNFRTGDRYLTSVKARSNQQIVFLDETGRSYSLSAHTLP--SA 566

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + +G+ L   L      R  +++    D++      ++     G      L + +  N++
Sbjct: 567 RGQGEPLSGRLQSAPEVRFVSVLAVEADKT------ILLTNTAGYGFVTTLENLLAKNKA 620

Query: 672 GKIAMKLDSRDEILSVETCT-QEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK    L    +IL       Q+ND + + +  G+ + F  S I         GVR I++
Sbjct: 621 GKALFNLPKGAQILPPLLLEDQDNDQMAVASGDGRLLVFAASEIPTL--NKGKGVRLINI 678

Query: 730 AKG 732
            + 
Sbjct: 679 PQA 681


>gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu]
          Length = 712

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 255/735 (34%), Positives = 387/735 (52%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++ +  + +YL+YA++V+ GRA+PD+ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 19  ALTLGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++ + TVDF PNYDGSF+EP +L  R P VL+NG  GIAVG+AT IP+HNL E
Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +P +    LM +I GPDFP G  I+     I  AY +GRGS+ +R    I
Sbjct: 199 VAAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDAEISTAYESGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL                   +K ++D+ D 
Sbjct: 259 EDLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES ++   R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L+
Sbjct: 319 VRDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 379 TILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA-- 436

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              LSE Q   ILE+RL +L  L +  I  
Sbjct: 437 -LMS--------------------------AFGLSERQAEDILEIRLRQLARLEKIKIEK 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL++L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 470 ELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRT-LIQQEKRATFEAKVVD 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S 
Sbjct: 529 EPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSR 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +        D+       ++ A+ +G
Sbjct: 581 GRVYSVDVAVLPGG--RGDGVPVTSLIELESGTHLMHYFAASADQQ------LLLASSNG 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D     L+ +        +   +  G+ + F +  ++
Sbjct: 633 FGFLAKVGDMVSRVKAGKAFMTIDEGAAPLAPMPVLPNAKQVACLSSGGRLLVFGMDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG+ L
Sbjct: 693 TLSG----GGRGVIL 703


>gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
          Length = 747

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 232/684 (33%), Positives = 355/684 (51%), Gaps = 69/684 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNP+  +  L E ++GPD+P+ A +I   + ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYETGNGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 250 ATFTKEANN-----IVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T ++  + VN+  + L+G +P+   L  +L  ++ FR  
Sbjct: 305 VLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDG-RPQVKNLKMLLSEWLTFRSN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A   L+ R       
Sbjct: 364 TVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q   ILE +L +L  L    IR E + L  E ++ 
Sbjct: 414 -------------------FGLSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L IL S+++L  +I+ EL +   +    RR+ +V  +    +++ + +  E M V +S  
Sbjct: 455 LGILDSKAKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     S +  RD D +       +   V F  S G  Y  
Sbjct: 515 GWI------------RAAKGHDVDASALSYRDGDALQGAVRARSTQQVAFLDSEGRAYST 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            V  LP  S +  G+ L    S   G    T+       S+      V A+ HG     +
Sbjct: 563 PVHTLP--SARGNGEPLTGRFSPAPGTSFVTLA------SAEPETRFVLASSHGYGFVTR 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL 685
             + I  N++GK  + L +   +L
Sbjct: 615 FENLIGRNKAGKAMLNLSAGSSVL 638


>gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 719

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 235/685 (34%), Positives = 361/685 (52%), Gaps = 68/685 (9%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+HPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MAQ +S R  L++GQGN+G+VD DP   AA RYTE RL K A  LL +LG+ TVD++P
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAVD-DPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQP 119

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ D  V ++DNP   LD 
Sbjct: 120 NFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDE 179

Query: 216 LMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           L  +++GPDFPT A +I  +  I+  Y  GRGSI +R     +K  G   +IV+  +P+Q
Sbjct: 180 LSTVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRAT--WKKEDG---EIVIRALPHQ 234

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTS 332
            + + ++ +IAE +  K++  + D+RDE+D +    ++ + R    D+  ++  L+  T 
Sbjct: 235 SSPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTD 294

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+  + VNM  +   +KP    L+ IL  +++FR   V RR +Y LNK   R H+L GL 
Sbjct: 295 LEKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLM 354

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           IA  N+DEV+ IIR    P+    ELM R                            LS+
Sbjct: 355 IAFLNIDEVIHIIRHEDEPKA---ELMAR--------------------------FNLSD 385

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AIL LRL  L  L   +++ E   L  E     +IL S  RL  ++K+E+      
Sbjct: 386 EQAEAILNLRLRHLAKLEEHELQAEQTELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 445

Query: 512 LDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR--- 566
             +PRR+ +VE      + + + +  E + V +S +G+V            R  KG    
Sbjct: 446 YASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEMGWV------------RCAKGHDID 493

Query: 567 -SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G+  +  D         ++ + +F  S G  Y      LP  S +++G+ L   L+L 
Sbjct: 494 PQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLMLP--SARSQGEPLTGKLTLP 551

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            G  I  ++   ED+       ++ A+  G     K +D I  N++GK  + L    ++L
Sbjct: 552 AGATIDQLLIENEDQP------LLMASDAGYGFICKFADLIARNKAGKALISLPENAKVL 605

Query: 686 SVETCTQENDILLT-TKLGQCVRFP 709
              T      +L+  T  G+ + FP
Sbjct: 606 PPLTLKNSTALLVALTSAGRMLIFP 630


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
          Length = 747

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 252/737 (34%), Positives = 386/737 (52%), Gaps = 69/737 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 19  EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAGAKYKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE RL   A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPD-DPKSFAAMRYTEARLAPFAELLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            ++G+ TV++ PN+DG+ QEP +L AR P+VL+NG  GIAVGMAT+IP HNL EV   C+
Sbjct: 138 SEVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPHNLHEVTAACL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++  P+  +  L E + GPD+PT A +I     +   Y TG+GS+ +R    +E+ +  
Sbjct: 198 HLLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRAQYMVEQGN-- 255

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKRGASA 320
              IVV  +P+QV+ A +LE+IA+ ++ K++  +ADLRDESD +     V++   R    
Sbjct: 256 ---IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLVLVPYARRMDV 312

Query: 321 DVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +++ L+  T L+  + VN+  + L+G +P+   L  +L  +  FR E + RR +Y L 
Sbjct: 313 ETVMSHLFATTDLERSYRVNLNVIGLDG-RPQVKNLRDLLGEWFYFRIETLRRRFRYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR  VL GL IA  N+DEV+ IIR   + E  +  LM R                  
Sbjct: 372 KVEDRLQVLAGLLIAYLNIDEVIAIIR---DEEAPKPVLMAR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q  AILEL+L  L  L    IR E  +L  E K    +L S SR+ 
Sbjct: 411 --------FKLSDRQAEAILELKLRYLARLEETKIRAENKALAAERKGLEKMLGSESRIK 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +++QELL+   +    RR+ IVE      ++ +  +  E + V +S  G+V        
Sbjct: 463 DLLRQELLADAKKFGDARRSPIVERSSATVLDKQSLLPAELITVVLSEKGWV-------- 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RA +      + +  R  D         ++ S +F  S G  Y      LP  S + +G+
Sbjct: 515 RAAKSQDVNPAALSYRTGDSYRASARGRSNQSAIFLDSTGRSYTLPAHGLP--SARGQGE 572

Query: 617 ALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            L   L +  G E I  ++  PE+       + + A+  G     +       NR+GK  
Sbjct: 573 PLSGHLQVAPGAEFIAILLAEPEE-------FYLMASNAGYGFLCQARHLYTKNRAGKAV 625

Query: 676 MKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS---LA 730
           + + +  + L     T  + + + + T +G+ + FP+  +   A    V +  IS   LA
Sbjct: 626 LNVSAGAKALPPVPVTDRELDQVAVATNVGRLLLFPLRDLPFIARGKGVKLINISSTRLA 685

Query: 731 KGDQVI-SMAIVLHADA 746
           +G + + ++A+V    A
Sbjct: 686 QGQEAVRALAVVSQGGA 702


>gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1]
          Length = 740

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 243/726 (33%), Positives = 383/726 (52%), Gaps = 79/726 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GK+
Sbjct: 8   EKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTVGDVLGKF 67

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 68  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKISEILL 126

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVDF+PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP HN+ EV D  V
Sbjct: 127 SELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEVADAAV 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNP   LD ++ II+GPDFPT A +I  +  I+  Y TGRGSI +R   H E     
Sbjct: 187 MLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWHKEDG--- 243

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG--ASA 320
             +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    ++ + R      
Sbjct: 244 --EIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVPRSNRVDT 301

Query: 321 DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           D ++  L+  T L+  + VNM  +   +KP    L+ +L  ++ FR   V RR ++ L+K
Sbjct: 302 DALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRRLQHRLDK 361

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL IA  N+DEV+ IIR    P   ++ LM R                   
Sbjct: 362 VLARLHILDGLMIAFLNIDEVIEIIRTEDEP---KQVLMAR------------------- 399

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LS+ Q  AIL LRL  L  L    ++ E + L  E      IL S  RL  
Sbjct: 400 -------FNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNT 452

Query: 500 IIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +IK+E+     +  +PR +++V  E    + + +    E + V +S +G+V         
Sbjct: 453 LIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTPAEPVTVILSEMGWV--------- 503

Query: 558 AQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG      G+  +  D         ++  V+F  S G  Y      LP  S ++
Sbjct: 504 ---RCAKGHDIDPEGLSYKAGDKYLAHACGKSNQPVIFIDSTGRSYALDPLSLP--SARS 558

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L   L+L  G  I  ++  PE +       ++ A+  G     K  D I  N++GK
Sbjct: 559 QGEPLTGKLTLPAGATIEQVIMEPEKQE------LLMASDAGYGFICKFEDLIARNKAGK 612

Query: 674 IAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             + L    ++L  ET ++   +L++ T  G+ + FP+             +  +S  KG
Sbjct: 613 ALISLPENAKVLKPETLSESTSLLVSLTSAGRMLIFPVR-----------DLPALSKGKG 661

Query: 733 DQVISM 738
           +++IS+
Sbjct: 662 NKIISI 667


>gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
          Length = 783

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 259/741 (34%), Positives = 381/741 (51%), Gaps = 80/741 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 16  ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 136 ISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +  +    L + + GPDFP G  I+     I   Y TGRGS+ +R    I
Sbjct: 196 VATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRARWKI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 256 EELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLGLLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTL 354
           +RDES +    R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGL 374

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++EV+RIIR S  P+ A 
Sbjct: 375 RDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPKAA- 433

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+Q ++N                         L++ Q   ILE+RL +L  L    I 
Sbjct: 434 --LIQ-AFN-------------------------LTDRQAEDILEIRLRQLARLEAIKIE 465

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL +L  E  E   +L S + +   I +E+ +   +    RRT I E       E  ++
Sbjct: 466 QELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTLIQEE-RRAAAEVKVI 524

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        R ++  G   +    +  D + D F   T  ++L F +
Sbjct: 525 DEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGT 576

Query: 595 -----LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                 G VY   V  LP G  +  G  L  ++ L  G  I   +    +++      V+
Sbjct: 577 RDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTLAGHAEQN------VL 628

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRF 708
            AT+ GN    K+ D +   + GK  + LD  D+    V        +   +  G+ + F
Sbjct: 629 IATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPVAVAEDAYGVACLSANGRLLLF 688

Query: 709 PISAIRVFAGRNSVGVRGISL 729
           P+S ++  A     G RG+ L
Sbjct: 689 PLSEVKTLAS----GGRGVIL 705


>gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
 gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
          Length = 768

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 252/756 (33%), Positives = 389/756 (51%), Gaps = 78/756 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G   V++ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY 
Sbjct: 8   DEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKSTSKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 68  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LL +LG+ T D+ PN+DG+  EP +L AR P+VL+NG  GIAVGMAT+I
Sbjct: 127 TESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ EV   CV ++  PD  ++ L E I+GPD+PT A +I  R  +   Y TGRGS+ 
Sbjct: 187 PPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYETGRGSLR 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +      GD   +V+T++P+QV+   +LE+IA+ ++ K++  +ADLRDESD +   
Sbjct: 247 MR--ARWVNEGGD---LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDESDHENPT 301

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFRE 366
            ++ + R    D   ++  L+  T L+  + VN+ V  N  +P    L+ +L  ++ FR 
Sbjct: 302 RLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLTEWLTFRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RR +Y L+K   R H+L GL IA  NLDEV+ IIR+   P+    ELM R      
Sbjct: 362 ATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKPKA---ELMVR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                       +++ +D        Q  AILEL+L  L  L    IR E + L IE   
Sbjct: 413 ------------FSLSAD--------QAEAILELKLRHLAKLEEMKIRGEQDELAIERDH 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL S  +L  +IK EL    +     RR+ IVE        + D +  + + V +S 
Sbjct: 453 LQSILGSEKKLRQLIKTELQQDAETYGDDRRSPIVERGESRAFSNIDLVSNDPVTVVLSE 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH----TSVLFFSSLGFVYK 600
            G+V            R  KG     +       D F +  H      V+F  S G  Y 
Sbjct: 513 KGWV------------RAAKGHDIDPLGLSYKAGDKFSLQAHGRNNQQVIFLDSTGRAYA 560

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   ++   G +   ++         +   VV  T  G     
Sbjct: 561 LMAHSLP--SARGQGEPLSGHINPPPGAQFCGLL------MGDSQRKVVLVTDGGYGFAT 612

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILL----TTKLGQCVRFPISAI 713
            L D +  NR+GK  + +     +++   V     E+   L     +  G+ + FP++ +
Sbjct: 613 SLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPESRETLYLAAVSNEGRMLVFPLTEL 672

Query: 714 RVFA---GRNSVGVRGISLAKGDQ-VISMAIVLHAD 745
                  G   + +    +   D+ V+++A+  H+D
Sbjct: 673 PELVKGKGNKLISIPSARVQSRDEFVVAVAVFAHSD 708


>gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
 gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
          Length = 739

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 212/539 (39%), Positives = 317/539 (58%), Gaps = 45/539 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D DP   AA RYTE +L +
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPD-DPKSFAAMRYTEAKLSQ 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ TV+++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSEVLLSELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V+ G +A+I NP+     L E I GPD PT A +I  +  +    +TGRGS  +R V  +
Sbjct: 192 VIKGTIALIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRGSYRMRAVYTV 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIELK 315
           EK      +I++TE+PYQV+ + ++ +IA+ ++ K++  ++DLRDESD     R+VI L+
Sbjct: 252 EKN-----EIIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHVNPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                AD +++ L+  T L+S + VN  M+  +G +P+  ++  IL  ++  R+E V RR
Sbjct: 307 SNRVDADTVMSHLFATTDLESSYRVNLNMIGADG-RPQVKSIRKILLEWIGIRKETVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LNK   R H+L GL IA  ++D V+RIIR   +P+     L+Q             
Sbjct: 366 LQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDHPKAV---LIQ------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  + E Q  AILEL+L  L  L   +IR E + L        + L+
Sbjct: 410 -------------TFKIDETQAEAILELKLRHLAKLQEMEIRQEQDELSARAALIREQLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +   L  +I  EL     +    RR+ IV  EG + M ++D I  E + V +S  G+++
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDERRSPIVEREGAVQMREQDLIPAEPVTVILSEAGWIR 515



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 57/107 (53%), Gaps = 6/107 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q I+ +S KG+G +T +     + ++GK   +     I E G  + +    D   + L+
Sbjct: 595 DQEIIAISSKGYGFKTQAKQLDTNAKAGKAFLS-----IPEGGKALPLLVNPDCSHLALL 649

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +D G L+ +PV+E+   ++  KG  +    +DE+++S+  +  +EI+
Sbjct: 650 TDTGRLLVLPVSELPSLNKG-KGNKLIQLEQDEQLLSMTTLNLNEII 695


>gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264]
          Length = 772

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 258/744 (34%), Positives = 386/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGFGFIAKIG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D+    L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
          Length = 731

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 236/710 (33%), Positives = 371/710 (52%), Gaps = 68/710 (9%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+
Sbjct: 3   VIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTACYE 62

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD+
Sbjct: 63  AMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDY 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+    + +++NPD  +
Sbjct: 122 QPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDTSM 181

Query: 214 DALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D +++I++ PDFPT A +I  +  ++  Y  G+GS+ +R V      S +  +IV+T +P
Sbjct: 182 DEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAV-----WSKEDGEIVITALP 236

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD--VILNQLYRY 330
           YQ + A ++E+IA  +R K++  + D++DESD +    ++ + R    D   ++  L+  
Sbjct: 237 YQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLFAT 296

Query: 331 TSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           T L+  + VNM  +    KP    L  IL  +++FR + V RR +Y L+K   R H+L G
Sbjct: 297 TDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHILDG 356

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L IA  N+DEV+ IIR   N +  ++ELM R                            L
Sbjct: 357 LLIAFLNIDEVIHIIR---NEDEPKQELMSR--------------------------FAL 387

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           SE Q  AIL LRL  L  L   ++R E   L  E K+   ILSS   L  +IK+E+    
Sbjct: 388 SEEQAEAILNLRLRHLAKLEETELRAEQKQLEQERKQLEKILSSDKNLNQLIKKEIEQDA 447

Query: 510 DELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR- 566
               +PR ++IV  E    + +   +  E + V +S +G+V            R  KG  
Sbjct: 448 KTYASPRLSKIVEREEAKAISESALVPVEPVTVILSEMGWV------------RCAKGHD 495

Query: 567 ---SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
                +  +  D         ++  V+F  S G  Y      LP  S +++G+ +   L+
Sbjct: 496 IDPQSLSYKAGDNYLAHVCGRSNQQVIFLDSTGRSYSLDPLSLP--SARSQGEPITGKLT 553

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  G  I  ++  P+ E +     ++ A+  G        D I  N++GK A+ L    +
Sbjct: 554 LPAGAMIEQLL-MPKAEQA-----LLMASDAGYGFVCNAEDLITRNKAGKAAISLPENAK 607

Query: 684 ILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +L       ++ +L+  T   + + FP+S +   +      +  I  AK 
Sbjct: 608 VLPPVVIENKSVLLVAITSANKMLLFPLSELPQLSKGKGNKIINIPAAKA 657


>gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum]
          Length = 755

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 224/623 (35%), Positives = 343/623 (55%), Gaps = 55/623 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE--GQGNFG 118
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L+E  GQGNFG
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFG 117

Query: 119 SVDGDPPAA-ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++DGD PAA   +    +   A  LL+ + +D V+FRPNYDG  +EP+VL   +PN+L N
Sbjct: 118 NIDGDNPAAYPLHRSAHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLAN 177

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTG 236
           G  GIAVGMAT+IP HN  E+ D  + +I+ PD    AL++ ++GPDFPTG + +  +  
Sbjct: 178 GAQGIAVGMATSIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQA 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I  AY TGRGS  +R     E+ +     +VVTEIP+ V K+ ++EKIAEL  +K++  +
Sbjct: 238 IAEAYTTGRGSFRVRARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLV 297

Query: 297 ADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTL 354
            D+RDES  +  R+VIE K +     +++  L+R T L++   +N+ V + G  P+   L
Sbjct: 298 GDVRDES-AEDVRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGL 356

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A 
Sbjct: 357 AECLREWLDHLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPA- 415

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+                             L+EVQ  AIL +RL  L  L   +IR
Sbjct: 416 --LMK--------------------------AFKLTEVQAEAILNMRLRSLRKLEEMEIR 447

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTP---RRTRIVEGL---LD 526
            E  +L  E+K    +L+S +     + +++  V+D     TP   RRT   +     L 
Sbjct: 448 TEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRRTTFADAPEHDLA 507

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
             +E  + RE + V VS  G+++ +   V        +  SG+  + +D +   F   T 
Sbjct: 508 AIEEAFVEREPVTVVVSDKGWIRTMKGHV--------EDLSGLAFKQDDRLGFAFFAETT 559

Query: 587 TSVLFFSSLGFVYKEKVWRLPIG 609
           + +L F++ G  Y   V +LP G
Sbjct: 560 SKLLLFATNGKFYSLDVAKLPGG 582


>gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1]
 gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1]
          Length = 758

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 376/714 (52%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V+ CVA++D P +DL+ LM  + GPD+PT A +I     I   Y TGRGS+  R
Sbjct: 190 HNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYETGRGSLKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E       +IV+T +P+Q +   +LE IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSVEAG-----EIVITALPHQASSGKILELIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           V++        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKDLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I+ E + L  E ++ 
Sbjct: 414 -------------------FNLTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  
Sbjct: 455 EQLLGSERRLKTLIKKELIQDGETYGDDRRSPIVERHESKALTEQELTPSEPVTVVLSDK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG             D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RSAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   EDE  +     + AT  G      
Sbjct: 563 DSHSLP--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQCF-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L +  + L  +     +E  IL  T  G+ + F + A+
Sbjct: 615 FNDMVSRNKAGKALLSLPTNAKSLPPKPIDRNREMSILAITNEGRMLLFSLEAL 668


>gi|325114455|emb|CBZ50011.1| putative DNA gyrase subunit A [Neospora caninum Liverpool]
          Length = 1533

 Score =  358 bits (918), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 315/546 (57%), Gaps = 72/546 (13%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E++ S+L YA + IL RA+PD+RDGLKPVHRR+++ M Q+ V  +  + KCAR+ GEV+
Sbjct: 147 EELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHVHPSGPFRKCARVVGEVL 206

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHF 141
           GK+HPHG+ A+YDALAR+AQ +  R  LI+G GNFGSVDGDPPAA RYTECRL +     
Sbjct: 207 GKFHPHGDQAVYDALARLAQTFVARHPLIDGHGNFGSVDGDPPAAMRYTECRLTRFCEDA 266

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL +L    V FRPN+D S +EPVV  A  P +L+ G  GIAVGM+T IP HNL EV+D 
Sbjct: 267 LLKNLSDKVVPFRPNFDASEEEPVVFPASVPLLLIQGSSGIAVGMSTQIPPHNLHEVIDA 326

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI----- 256
            VA+I +P++  + L++I+ GPDFPTG +++    I +AY  G G +++RG  H+     
Sbjct: 327 AVALIRDPNLPDEELLKIVPGPDFPTGGLLVNAEEIPSAYKEGHGRVLLRGRVHLEGEEG 386

Query: 257 -----------------------------EKTSGDREQI-----------VVTEIPYQVN 276
                                        E+  G R +I           V+TE+PY VN
Sbjct: 387 EEEGEEEGEEDVKKSAVRGRDREREDGGNEEQEGKRSRIKGKEKRKERRLVITELPYGVN 446

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K+ +++ IA+++  K +  +A +RDESD +G RVV+ L+R A A  IL  L ++T+LQ  
Sbjct: 447 KSTVMQVIAQMISVKFLEGVASVRDESDWRGIRVVLVLRREADAHTILTLLLKHTNLQVY 506

Query: 337 FSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
             +N++AL  G +P RF+L  +L ++++FR + + R       + + R+H+L GL  AV 
Sbjct: 507 IPMNLIALEKGTRPVRFSLKSLLLSWISFRFDTLRRLLAAEEAERKARSHLLEGLLRAVN 566

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            +D+VV+ +R S + + A+R+L                         ++  +  S  Q +
Sbjct: 567 LMDQVVKTVRESLSADEAKRKL-------------------------AEPPLGFSPAQAQ 601

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           A+L L L+RLT L R  + +E       +     +L+  + +  ++  EL ++K     P
Sbjct: 602 ALLRLTLSRLTRLERRQLEDEAAEQTRRLARLASLLAHDNEIYDLMTDELKALKSRHRAP 661

Query: 516 RRTRIV 521
           RRT++V
Sbjct: 662 RRTKVV 667



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%)

Query: 688  ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +T T+   I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V
Sbjct: 1210 KTDTRSPSIVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVV 1263


>gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
 gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
          Length = 749

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 236/705 (33%), Positives = 373/705 (52%), Gaps = 70/705 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   K Y KCARI G+VMGK HPHG+ +IYDAL R+AQ +++R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGKAYTKCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NLDE+V+IIR +  P+       
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEPK------- 411

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                    K+LI                 L+E Q  +IL +RL  L  L   +IR E +
Sbjct: 412 ---------KELI-------------VCFKLTENQAESILNMRLRSLRKLEEFEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIVEGL-LDMED--E 530
           SL IE ++  ++L+S  +   II +E+  V+     D     RRT   +    D+ D  +
Sbjct: 450 SLKIEKEKLQNLLASNIKQWKIIAEEITRVRKSFGPDTFLGKRRTTFEDAPRHDVNDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLNDYKTLSFKEGDCLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-----SSWNN 645
             S+ G  +      LP G  +  G+ +  ++ +++   I T   +  +      SS+ N
Sbjct: 562 VISTGGKFFTISANTLPGG--RGHGEPIRILVDMDKEHDILTAFVYNMEGKRLLISSYGN 619

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
            ++V              D I   R GK  M + S D   S++ C
Sbjct: 620 GFIVSEI-----------DIIANTRKGKQVMNIKSPD---SLKLC 650


>gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
 gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
          Length = 783

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 258/741 (34%), Positives = 382/741 (51%), Gaps = 80/741 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 16  ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 136 ISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +  +    L + + GPDFP G  I+     I   Y TGRGS+ +R    I
Sbjct: 196 VATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRARWKI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 256 EELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLGLLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTL 354
           +RDES +    R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGL 374

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++EV+RIIR S  P+ A 
Sbjct: 375 RDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPKAA- 433

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+Q ++N                         L++ Q   ILE+RL +L  L    I 
Sbjct: 434 --LIQ-AFN-------------------------LTDRQAEDILEIRLRQLARLEAIKIE 465

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL +L  E  E   +L S + +   I +E+ +   +    RRT I E       E  ++
Sbjct: 466 QELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTLIQEE-RRAAAEVKVI 524

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        R ++  G   +    +  D + D F   T  ++L F +
Sbjct: 525 DEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGT 576

Query: 595 -----LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                 G VY   V  LP G  +  G  L  ++ L  G  I   +    +++      V+
Sbjct: 577 RDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTLAGHAEQN------VL 628

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
            AT+ GN    K+ D +   + GK  + LD  D+        ++   +   +  G+ + F
Sbjct: 629 IATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVAEDAYGVACLSANGRLLLF 688

Query: 709 PISAIRVFAGRNSVGVRGISL 729
           P+S ++  A     G RG+ L
Sbjct: 689 PLSEVKTLAS----GGRGVIL 705


>gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 258/744 (34%), Positives = 386/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIREIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGFGFIAKIG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D+    L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
 gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
          Length = 745

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 379/711 (53%), Gaps = 71/711 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K AR 
Sbjct: 7   SFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKYKKSART 66

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE +L
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYTESKL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL +LG+ TV++ PN+DG+  EP +L AR PNVL+NG  GIAVGM+T+IP HNL
Sbjct: 126 APYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV + C+ ++ +P   LD LM+ I+GPDFPT A VI     I   YA G+GS+  R V 
Sbjct: 186 REVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLKQRAV- 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+  GD   IVVT +PYQV+ A +LE+IA+ + +K++  ++DLRDESD +    ++  
Sbjct: 245 -YEREDGD---IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRLVIT 300

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            R    DV  +++ L+  T L+  + V  NM+ ++G +P+  +L  IL  ++ FR   V 
Sbjct: 301 PRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDG-RPQVKSLDMILNEWLQFRMVTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K  +R H+L GL  A  N+DEV+ IIR    P+     LM+R          
Sbjct: 360 RRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPV---LMER---------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +S+ Q  AILEL+L  L  L    IR E + L  E +     
Sbjct: 407 ----------------FGISDRQAEAILELKLRHLAKLEEMKIRGEQDELNEEREYLETT 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S +++  ++ +EL    ++    RR+ +VE      +++ D +  + + V +S  G+V
Sbjct: 451 LGSMAKMKKLVAKELKDDAEKYGDDRRSPLVERDDAKALDETDLLSADPVTVVLSEKGWV 510

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                       R  KG      G+  +  D         ++  V F  S G  Y     
Sbjct: 511 ------------RAAKGHEVDVEGLSYKAGDKYKASAKGKSNQPVCFIDSTGRTYSLPAH 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   +S   G      +   +D+ ++     + +T  G     + +D
Sbjct: 559 TLP--SARGQGEPLSGRVSPPSGASFMAAV-MGKDKDAY-----LMSTDAGYGFVVRYAD 610

Query: 665 FIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAI 713
            +   ++GK  + +     +LS +    T ++ I L +  G+ + FP+S +
Sbjct: 611 LLANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSNEGRLLVFPVSEL 661


>gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
 gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
          Length = 758

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 242/714 (33%), Positives = 378/714 (52%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT A I+  +  I   Y TGRGS+  R
Sbjct: 190 HNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYETGRGSLKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSVEAG-----EIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKELLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I+ E + L  E ++ 
Sbjct: 414 -------------------FNLTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  
Sbjct: 455 EQLLSSERRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQELTPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG             D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   EDE  +     + AT  G      
Sbjct: 563 DSHSLP--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQCF-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L    + L       ++E  IL  T  G+ + F + A+
Sbjct: 615 YNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREMSILAITNEGRMLLFSLEAL 668


>gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
 gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
          Length = 758

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 243/714 (34%), Positives = 377/714 (52%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADIAKVYETGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +     D  +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSV-----DAGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKELLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I+ E + L  E ++ 
Sbjct: 414 -------------------FNLTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  
Sbjct: 455 EQLLSSDRRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQELTPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG             D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   EDE  +     + AT  G      
Sbjct: 563 DSHSLP--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQCF-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L +  + L        +E  IL  T  G+ + F + A+
Sbjct: 615 YNDMVSRNKAGKALLSLPTNAKSLPPRPIDRNREMSILAITNEGRMLLFSLEAL 668


>gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957]
          Length = 783

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 258/741 (34%), Positives = 382/741 (51%), Gaps = 80/741 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 16  ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 136 ISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +  +    L + + GPDFP G  I+     I   Y TGRGS+ +R    I
Sbjct: 196 VAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRARWKI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 256 EELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLGLLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTL 354
           +RDES +    R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGL 374

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++EV+RIIR S  P+ A 
Sbjct: 375 RDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPKAA- 433

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+Q ++N                         L++ Q   ILE+RL +L  L    I 
Sbjct: 434 --LIQ-AFN-------------------------LTDRQAEDILEIRLRQLARLEAIKIE 465

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL +L  E  E   +L S + +   I +E+ +   +    RRT I E       E  ++
Sbjct: 466 QELKNLREEQGELDVLLKSETMMRRRIVKEIETDAKQYGDDRRTLIQEE-RRAAAEVKVI 524

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        R ++  G   +    +  D + D F   T  ++L F +
Sbjct: 525 DEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGT 576

Query: 595 -----LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                 G VY   V  LP G  +  G  L  ++ L  G  I   +    +++      V+
Sbjct: 577 RDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTLAGHAEQN------VL 628

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
            AT+ GN    K+ D +   + GK  + LD  D+        ++   +   +  G+ + F
Sbjct: 629 IATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVAEDAYGVACLSANGRLLLF 688

Query: 709 PISAIRVFAGRNSVGVRGISL 729
           P+S ++  A     G RG+ L
Sbjct: 689 PLSEVKTLAS----GGRGVIL 705


>gi|194293775|gb|ACF39982.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293805|gb|ACF39997.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 232/305 (76%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 761

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 236/707 (33%), Positives = 380/707 (53%), Gaps = 63/707 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M  +G+  + KY K 
Sbjct: 11  GVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLNASAKYKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + A  LL++LG+ TVD+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 AKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+ + C  ++DN   +L  ++  + GPD+PT A +I  +  I+  Y TGRGSI +R
Sbjct: 190 HNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADIQKLYETGRGSIKMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E  SGD   +V+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +    +
Sbjct: 250 AVYSEE--SGD---VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           +   R    DV  ++  L+  T L+  + V  NM+ L+G +P+   L  IL  ++ +R++
Sbjct: 305 VITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDG-RPQVKDLRTILTEWLQYRKD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R       
Sbjct: 364 TVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKP---KPELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FGLSDKQAEAILELKLRHLAKLEEMKIKGEQDELAAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+L+  ++    RR+ IVE      + +++ +  E + V +S  
Sbjct: 455 QQLLGSDRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKELVPAESVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+ +        A+    K   G +   E          ++   +F  S G  +      
Sbjct: 515 GWARCAKGHDIDAEGLSYKAGDGYLSSAEG--------KSNQPAVFMDSSGRTFSCDAHG 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ L    S+  GE     +   +D+S +     +  +  G        D 
Sbjct: 567 LP--SARSQGEPLTGRFSIVGGESFQHAI-MAQDDSKF-----LVGSDAGYGFVGTFKDM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT-TKLGQCVRFPI 710
           +  N++GK  + L +  +++     T  + D  L+ +  G+ + FP+
Sbjct: 619 VSKNKAGKAYLSLPTAAKVMKPTPVTNPDTDWCLSISNEGRMLMFPL 665


>gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
 gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
          Length = 780

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 263/746 (35%), Positives = 379/746 (50%), Gaps = 77/746 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+   S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K
Sbjct: 9   QPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RY
Sbjct: 69  PVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LLD++ + TVDF  NYDGS +EP +L AR P VL+NG  GIAVGMAT +
Sbjct: 129 TEARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGASGIAVGMATEV 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
           P HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+     I   Y +GRGS+ 
Sbjct: 189 PPHNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQIYESGRGSLK 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------R 292
           +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K                  
Sbjct: 249 VRARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKALTPEQQQLKAS 308

Query: 293 IVDIAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYK 348
           ++ + D +RDES +    R+V E K +       +  L  +TSL+S   VN+V +    +
Sbjct: 309 VLAVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPVNLVMIGTDGR 368

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P +  L  IL+ ++ FR   V RRT+Y L K  DR H+L G  + + N+DEV+RIIR S 
Sbjct: 369 PRQKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESD 428

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P+ A   LM+R                            LS+ Q   ILE+RL +L  L
Sbjct: 429 EPKPA---LMER--------------------------FGLSDRQAEDILEIRLRQLARL 459

Query: 469 GRDDIRNELNSLGIEIKECLDILSS----RSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
               I  EL  L  E  +   +L S    R R++  I+ +      E   PRRT I E  
Sbjct: 460 EAIRIEKELKDLREEQADLDVLLKSDTMMRRRIIKEIETDAKQYSPEDKDPRRTLIQEE- 518

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                E  +V E + V VS  G+V        R ++  G        +  D + D F   
Sbjct: 519 RRAAAEVRVVDEPVTVVVSQKGWV--------RTRQGHGHDAQQFTFKAGDALYDTFECR 570

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T   +L F + G VY   V  LP G  +  G  L  ++ L  G +I          +   
Sbjct: 571 TIDVLLAFGTNGRVYSVPVASLPGG--RGDGVPLTTLIELQPGSQIAHTF------AGSA 622

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLG 703
              ++ AT+ GN    K++D     + GK  + LD  D  L+     ++   +   +  G
Sbjct: 623 EQRMLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDGDAPLTPAPIASEATHVACLSGNG 682

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL 729
           + +   +  ++V     S G RG+ L
Sbjct: 683 RLLLVALDEVKVL----SAGGRGVIL 704


>gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
 gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
          Length = 749

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 260/787 (33%), Positives = 398/787 (50%), Gaps = 114/787 (14%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++ GI  +S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   K+
Sbjct: 8   DDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKATAKF 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA R
Sbjct: 68  KKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LL +LG+ TVD+ PN+DG+ +EP +L A+ PNVL+NG  GIAVGMAT+
Sbjct: 127 YTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNGTTGIAVGMATD 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSI 248
           IP HNL EVV   V ++D P   L  L EII+GPD+PT A +I  R  I   YATGRG +
Sbjct: 187 IPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDIAQIYATGRGGL 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V   E   GD   IVVT +P+Q + + +LE+IA+ ++ K++  +ADLRDESD +  
Sbjct: 247 RMRAVWDTEH--GD---IVVTALPHQASGSRVLEQIAQQMQAKKLPMVADLRDESDHENP 301

Query: 309 RVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAF 364
             ++ + R      D +++ L+  T L+  + V  NM+ ++G +P   +L GILK ++ F
Sbjct: 302 TRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDG-RPGVRSLDGILKQWLKF 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V RR  Y L + + R H+L G   A  N+DEV+ IIR   +P+ A   L+ R    
Sbjct: 361 RRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQA---LIAR---- 413

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS++Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 414 ----------------------FELSDIQAEAILELKLRNLAKLEEMKIRGEQDELEKER 451

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
                 L S +RL  +IK+EL ++ ++    RR+ +   E      + + +  + + V +
Sbjct: 452 DWLEKTLGSEARLKTLIKKELTAIAEKYGDDRRSPLASREEAQAFSELELMTADPITVVL 511

Query: 543 SHLGYVKRV------PLSV-------YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT-- 587
           S  G+++        P S+       ++   RG   +  V++   D     + ++TH   
Sbjct: 512 SEKGWIRAAKGHDMDPASLSYKSGDSFKLAARGRSNQPAVII---DSTGRAYTLATHNLP 568

Query: 588 -------------------------------SVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
                                            L  S  G+ +        +G  Q + +
Sbjct: 569 SARGQGEPLTGRINPPSGAGFDGLMMGDSGQRCLLSSDAGYGFITT-----LGELQTKNR 623

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--- 673
           A    L+L  G R+ +  P  ED + W    V   +  G +    L+D   ++R GK   
Sbjct: 624 AGKAALTLPAGARVVSPAPIGED-AQW----VAAVSNEGRLLLFPLADLPSLSR-GKGNK 677

Query: 674 -IAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            IA+   +   R+E +      +END L      + +    S +  + G    G RG  L
Sbjct: 678 IIAIPGPRARDREEFMIATAVLRENDGLTVWAGKRHLTLKRSELEHYHGER--GRRGNKL 735

Query: 730 AKGDQVI 736
            +G Q +
Sbjct: 736 PRGFQRV 742


>gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
 gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
          Length = 735

 Score =  357 bits (916), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 246/729 (33%), Positives = 389/729 (53%), Gaps = 75/729 (10%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG++A Y+
Sbjct: 3   VILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYE 62

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL ++ + TVD+
Sbjct: 63  AMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSDVLLREVSQGTVDW 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            PN+DG+ +EP VL AR PN+L+NG  GIAVGMAT++P HNL EV + C+ +++NP+ DL
Sbjct: 122 VPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNSDL 181

Query: 214 DALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D LM  ++GPD+PTG  +   R  IK  Y TG+G I  R    +E+  GD   IV+ E+P
Sbjct: 182 DDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEE--GD---IVIKELP 236

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRY 330
           +  + + +LE+IA  ++ K++  I DLRDESD +    ++ + +    DV  ++  L+  
Sbjct: 237 HYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLFAS 296

Query: 331 TSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           T L+  + VNM  + L+G  P    L   L  ++ FR +VV +R ++ L+K  +R H+L 
Sbjct: 297 TDLERSYRVNMNVIGLDGL-PHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHILE 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL +A  N+DEV+ IIR   N E  + ELM R                            
Sbjct: 356 GLLVAFLNIDEVIEIIR---NEEKPKVELMLR--------------------------FG 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+++Q  AILEL+L  L  L    I+ E + L  E K+   +L S  +L  +I +E+   
Sbjct: 387 LTDIQAEAILELKLRHLAKLEEMRIKGEQDELEKERKQLEALLGSDRKLKKLISEEIQEA 446

Query: 509 KDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            D     RRT IVE        +ED +  + + V +S  G++            R  KG 
Sbjct: 447 VDAHGDERRTPIVERKESQAFSEEDLLSNDPVTVVISKQGWI------------RSAKGH 494

Query: 567 SGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
               +       D F +S    ++ +++  +S G  Y  K   LP  S + +G+ +   +
Sbjct: 495 DVDPLALNYKSGDEFSISCKGRSNQTLVLLASNGRSYSIKAHTLP--SARGQGEPITGRI 552

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           SL +   I   M       + +N + + A+  G     KL D    N++GK  + L +  
Sbjct: 553 SLEKDVTIVAAM------LNADNTFYLIASDAGYGFIAKLGDLHAKNKAGKATLTLPTSA 606

Query: 683 EILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQ-VI 736
           ++L+  + +    + I++T+  G+ + F   ++   A   G   + ++    A  ++ V+
Sbjct: 607 KVLTPISVSDPASSHIVVTSNEGRMLAFKADSLPQMAKGKGNKMISIQASRAASHEEYVV 666

Query: 737 SMAIVLHAD 745
           +MA VL  D
Sbjct: 667 AMASVLADD 675


>gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 747

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 363/708 (51%), Gaps = 73/708 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R     A+ ++  L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLRQLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     LM +       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LMAK------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           L IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 LAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDSLLAAVRSRSTH-QVAFLDSEGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGASFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCV 706
           +  +    N++GK  + L +  ++L+    T  Q + I+  T  G  +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSDRIVAVTSAGNLL 661


>gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4]
          Length = 743

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 245/719 (34%), Positives = 378/719 (52%), Gaps = 85/719 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ D  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+  + KY K AR  G
Sbjct: 9   SLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSASAKYKKSARTVG 68

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE RL  
Sbjct: 69  DVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEARLAP 127

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL ++G+ TV++ PN+DG+ +E  +L AR P+VL+NG  GIAVGMAT+IP HNLGE
Sbjct: 128 FAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMATDIPPHNLGE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV  C+ +++ P   +  L + + GPD+PT A +I   T +   Y TG GS+ +R    +
Sbjct: 188 VVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHGSVRMRACYTL 247

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIEL 314
           EK  GD   IV+  +PYQV+ A +LE+IA+ ++ K++  + DLRDESD +     V++  
Sbjct: 248 EK--GD---IVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHENPTRLVLVPR 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            R    + +++ L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR E++ RR
Sbjct: 303 TRRVEVETVMSHLFATTDLERSYRVNLNVIGLDG-RPQVKNLRDLLAEWLHFRIEIIRRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K +DR  +L GL IA  N+DEV+ IIR    P+     LM R            
Sbjct: 362 LQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPKPV---LMAR------------ 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q  AILEL+L  L  L    IR E  +L  E K    IL 
Sbjct: 407 --------------FELSDRQAEAILELKLRHLMRLEETKIRAEDKALAAERKRLEKILG 452

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S  ++ G++++EL++  ++    RR+ IVE      ++++  +  E + V +S  G+V+ 
Sbjct: 453 SERQIKGLLRKELVADVEKFGDARRSPIVERPSATALDEQALLPAEPITVVLSEKGWVRA 512

Query: 551 V------PLSV-YR---AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
                  P ++ YR     R   +GRS                  +   +F  S G  Y 
Sbjct: 513 AKSHEVDPTTLSYRTGDGYRASARGRS------------------NQPAIFLDSTGRSYT 554

Query: 601 EKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                LP  S + +G+ L   L +  G E +  ++  PE       ++ + A+  G    
Sbjct: 555 LPAHGLP--SARGQGEPLSGHLQVVPGAEFVAVLLAEPE-------IFYLMASDAGYGFL 605

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVF 716
            +       NR+GK  + L +    L        +   I + T  G+ + FP+  + + 
Sbjct: 606 CQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEVEQIAIATNTGRLLLFPLGELPIM 664


>gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 747

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 244/715 (34%), Positives = 366/715 (51%), Gaps = 73/715 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E + GPD+PT A +I     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R     A+ ++  L+  T L+  +  ++N++ L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDG-RPQVKNLRQLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    R + +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARLSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG     +G+  RD D  +  +   STH  V F  S G  Y 
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTH-QVAFLDSEGRAYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  LP  S +  G+ L    S   G     +       S+ N    V A+ HG     
Sbjct: 562 TAVHTLP--SARGNGEPLTGRFSPASGAAFQVMA------SADNATRFVLASSHGYGFVT 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
           +  +    N++GK  + L +   +L+    +  Q + I+  T  G  +  P + +
Sbjct: 614 RFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPATEV 668


>gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
 gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
          Length = 754

 Score =  357 bits (915), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 255/789 (32%), Positives = 409/789 (51%), Gaps = 82/789 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++  Y TGRGS+ +
Sbjct: 189 PHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   IV+  +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRVE--DGD---IVIQALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  ++  L+  T L++ + VN+  + L+G KP+   L  +L  ++ FR 
Sbjct: 304 IVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDG-KPQVKDLRQLLSEWLQFRI 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+     LM+R      
Sbjct: 363 GTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+ RL +L  L    IR E   L  E K 
Sbjct: 414 --------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKR 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  ++++EL+   +     RR+ IV       + + + +  E + V +S 
Sbjct: 454 LQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     ++  P+D++    L+V+ A+  G     
Sbjct: 562 LPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDDDA----LFVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S +     
Sbjct: 614 KGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK 673

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G   +G+ G  +A  ++ ++   VL A A           + A +R +S   +++   
Sbjct: 674 GKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLKGDDLEHY 725

Query: 776 KNDSSVEGN 784
           K +    GN
Sbjct: 726 KGERGRRGN 734


>gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4]
          Length = 772

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 258/744 (34%), Positives = 385/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S   +N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAVLNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGFGFIAKIG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D+    L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2]
 gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
 gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
          Length = 754

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 255/789 (32%), Positives = 409/789 (51%), Gaps = 82/789 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++  Y TGRGS+ +
Sbjct: 189 PHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   IV+  +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRVE--DGD---IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  ++  L+  T L++ + VN+  + L+G KP+   L  +L  ++ FR 
Sbjct: 304 IVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDG-KPQVKDLRQLLSEWLQFRI 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+     LM+R      
Sbjct: 363 GTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+ RL +L  L    IR E   L  E K 
Sbjct: 414 --------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKR 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  ++++EL+   +     RR+ IV       + + + +  E + V +S 
Sbjct: 454 LQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     ++  P+D++    L+V+ A+  G     
Sbjct: 562 LPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDDDA----LFVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S +     
Sbjct: 614 KGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK 673

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G   +G+ G  +A  ++ ++   VL A A           + A +R +S   +++   
Sbjct: 674 GKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLKGDDLEHY 725

Query: 776 KNDSSVEGN 784
           K +    GN
Sbjct: 726 KGERGRRGN 734


>gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003]
 gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003]
          Length = 774

 Score =  357 bits (915), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 252/734 (34%), Positives = 382/734 (52%), Gaps = 73/734 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+  N K VK AR+ 
Sbjct: 21  LTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+++R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDG  +EP  L AR P +L+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 SKLLLDEIDQGTVDFMPNYDGVEEEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I    LM+ + GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKIAHAELMQHLPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
             +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 261 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLGLLDAV 320

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +    R+V E K         +N L  +TSL+S  S+N+V + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                              LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 LM--------------------------AAFGLSDRQADDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S S +  ++ +E+ +   +    RRT +++       E  ++ E
Sbjct: 472 LAELRDEKAKLEELLGSESAMKRLLIKEIEADAKQYGDERRT-LIQQEKRATYEARVIDE 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 531 PVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLVAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D++      ++ A+ +G 
Sbjct: 583 RVYSVAVASLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+ +      + +   +  G+ + F I  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPLLPDASQVACLSSTGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISL 729
            +G    G RG++L
Sbjct: 695 LSG----GGRGVTL 704


>gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia
           R551-3]
 gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 747

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 232/685 (33%), Positives = 355/685 (51%), Gaps = 69/685 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNP+  +  L E ++GPD+P+ A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYETGNGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 250 ATFTKEANN-----IVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T ++  + VN+  + L+G +P+   L  +L  ++ FR  
Sbjct: 305 VLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDG-RPQVKNLKMLLSEWLTFRSN 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A   L+ R       
Sbjct: 364 TVTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q   ILE +L +L  L    IR E + L  E ++ 
Sbjct: 414 -------------------FGLSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
           L IL S+++L  +I+ EL +   +    RR+ +V  +    +++ + +  E M V +S  
Sbjct: 455 LGILDSKTKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVMSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G++            R  KG     S +  RD D +       +   V F  S G  Y  
Sbjct: 515 GWI------------RAAKGHDIDASTLSYRDGDALQGAVRARSTQQVAFLDSEGRAYST 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            V  LP  S +  G+ L    S   G    T+       S+      V A+ HG     +
Sbjct: 563 PVHTLP--SARGNGEPLTGRFSPAAGTSFVTLA------SAEPETRFVLASTHGYGFVTR 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS 686
             + I  N++GK  + L +   +L+
Sbjct: 615 FENLIGRNKAGKAMLNLSAGSTVLT 639


>gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16]
 gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16]
          Length = 780

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 258/748 (34%), Positives = 381/748 (50%), Gaps = 81/748 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+   S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K
Sbjct: 9   QPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RY
Sbjct: 69  PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LLD++ + TVDF PNYDGS QEP +L AR P VL+NG  GIAVGMAT I
Sbjct: 129 TEARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGASGIAVGMATEI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           P HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+   + I   Y  GRGS+ 
Sbjct: 189 PPHNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQIYEGGRGSLK 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------R 292
           +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K                  
Sbjct: 249 VRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTQDQQQLKAT 308

Query: 293 IVDIAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYK 348
           ++ + D +RDES +    R+V E K +       ++ L  +TSL+S   +N+V +    +
Sbjct: 309 VLAVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPINLVMIGTDGR 368

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P +  L  IL  ++AFR + V RRT++ L K  DR H+L G  + + N+DEV+RIIR S 
Sbjct: 369 PRQKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESD 428

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P+ A                LI+                LS+ Q   ILE+RL +L  L
Sbjct: 429 EPKPA----------------LIE-------------AFGLSDRQAEDILEIRLRQLARL 459

Query: 469 GRDDIRNELNSLGIEIKEC-LDILSS-----RSRLLGIIKQELLSVKDELDTPRRTRIVE 522
             + IR E     +  ++  LD+L       R R++  I+ +      E   PRRT I E
Sbjct: 460 --EAIRIEKELKELREEQADLDVLLKSETMMRRRIIKEIETDAKQYSPEDKDPRRTLIQE 517

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  E  ++ E + V +S  G+V        R ++  G        +  D +   F 
Sbjct: 518 E-RRAAAEVRVIDEPVTVVMSQKGWV--------RTRQGHGHDAQQFTFKAGDALYGTFE 568

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F + G VY   V  LP G  +  G  +  ++ L  G ++          + 
Sbjct: 569 CRTVDVLLVFGTNGRVYSVPVASLPGG--RGDGVPITTLIELQSGSQVAHTF------AG 620

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTK 701
                ++ AT  GN  + K+ D I   + GK  + LD  D  L+      E   +   + 
Sbjct: 621 SAEQRMLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGDTPLAPAPIGDEATHVACLSG 680

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G+ +   +  ++V     S G RG+ L
Sbjct: 681 NGRLLLVALDEVKVL----SAGGRGVIL 704


>gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
 gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
          Length = 749

 Score =  356 bits (914), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 250/747 (33%), Positives = 390/747 (52%), Gaps = 93/747 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++ GI  +S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY
Sbjct: 8   DDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKSTAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ++S R  L++GQGN+G+ D DP   AA R
Sbjct: 68  KKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAPD-DPKSFAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LL +LG+ TVD+ PN+DG+  EP +L A+ PN+L+NG  GIAVGMAT+
Sbjct: 127 YTESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNGTTGIAVGMATD 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSI 248
           IP HNL EVV   + ++D P   L  L EII+GPDFPT A +I     I   YATGRGS+
Sbjct: 187 IPPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDIAQIYATGRGSL 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V  +E   GD   IVV+ +P+Q + + +LE+IA+ ++ K++  +ADLRDESD +  
Sbjct: 247 RMRAVWELEH--GD---IVVSALPHQASGSRVLEQIAQQMQAKKLPMVADLRDESDHENP 301

Query: 309 RVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAF 364
             ++ + R    D   +++ L+  T L+  + V  NM+  +G +P   +L GIL  ++ F
Sbjct: 302 TRLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDG-RPGVRSLDGILNQWLKF 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L +   R H+L G  +A  N+DEV+ IIR   +P+ A   LMQR    
Sbjct: 361 RRDTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQA---LMQR---- 413

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +S+VQ  AILEL+L  L  L    IR E + L  E 
Sbjct: 414 ----------------------FEISDVQAEAILELKLRNLAKLEEMKIRGEQDELEKER 451

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
           +     L S +RL  +IK+EL ++ ++    RR+ +   E      + + +  + + V +
Sbjct: 452 EWLEKTLGSDARLKTLIKKELTAIAEKYGDDRRSPLASREEARAFSELELMTADPITVVL 511

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT------DLFIVS----THTSVLFF 592
           S  G++            R  KG       D D  T      D F ++    ++   +  
Sbjct: 512 SEKGWI------------RAAKG------HDMDPATLSYKSGDSFKLAARGRSNQPAVII 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP  S + +G+ L   ++   G     +M         N    + A+
Sbjct: 554 DSTGRAYTLATHNLP--SARGQGEPLTGRINPPSGAGFDGLM------MGDNEQRCLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPIS 711
             G      L++    NR+GK A+ L +  +++S V        +   +  G+ + FP++
Sbjct: 606 DAGYGFVTTLAELQTKNRAGKAALSLPAGAKVVSPVPINEGAQWVAAVSNEGRLLLFPLA 665

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISM 738
            +             +S  KG+++I++
Sbjct: 666 DL-----------PSLSRGKGNKIIAI 681


>gi|56159862|gb|AAV80742.1| gyrase subunit A [Bacillus sp. NRRL B-23935]
          Length = 270

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 165/270 (61%), Positives = 213/270 (78%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME 
Sbjct: 121 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYR 309
           ++EKIA+LVR+K+I  I DLRDES R G R
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESARNGMR 270


>gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
 gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
          Length = 754

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 225/636 (35%), Positives = 349/636 (54%), Gaps = 53/636 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE   T V + + ++  YL YA++ I  RA+PD RDGLKPVHRRIL+GM  + ++    +
Sbjct: 16  EETAPTPVDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPF 75

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYT
Sbjct: 76  KKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYT 135

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL+ + +D +DF+PNY G  +EP+VL +  PN+L NG  GIAVGMAT+IP
Sbjct: 136 EARMTSVARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIP 195

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HNL E+ D  + +I + +   + L+  ++GPDFPTG +I+  R  I  AY TGRGS  +
Sbjct: 196 PHNLAELCDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRV 255

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+        VVTEIPY V K+ ++EK+AEL+ E+++  +AD+RDES  +  R+
Sbjct: 256 RARWTKEELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDES-AEDVRI 314

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEV 368
           V+E + R   A +++  L++ + L++ F +NM V ++G  P   +L   L+ ++  R EV
Sbjct: 315 VLEPRSRNIDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREV 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+++ L     R   L G+ I   NLDEV+RIIR     + A+ EL +         
Sbjct: 375 LQRRSRHRLAAILRRIEQLEGMIIVFLNLDEVIRIIR---EEDDAKGELKK--------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q   IL+ RL  L  L   ++R EL  L  E  +  
Sbjct: 423 -----------------AFKLTDLQVDYILDTRLRSLRKLEEMELRRELKELTDERADIE 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP------RRTRI--VEGLLDME-DEDCIVREDMV 539
            +L+   R    I  ++  +K ++  P      RRT        +D++  E  I RE + 
Sbjct: 466 ALLADDGRQWKTIAAQVRELK-KIYGPQTEIGKRRTTFEDAPAAVDLDLAEAMIEREPIT 524

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V VS  G++        RA +   +  S +  + +D +   F   T + +L  ++ G  Y
Sbjct: 525 VVVSKKGWI--------RALKGHVQDLSTLQFKGDDELDTSFFAQTTSKILVLATNGKAY 576

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
                +LP G  +  G+ +     +++   +  ++P
Sbjct: 577 TLDASKLPGG--RGHGEPIRLFADIDEDASVARVLP 610


>gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 750

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 377/711 (53%), Gaps = 70/711 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 8   EGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+VD DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD L+ +++GPDFPT A +I  +  I   Y  GRGSI +
Sbjct: 187 PHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIHKIYQQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R     +K  G   +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +   R
Sbjct: 247 RAA--WKKEDG---EIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVR 301

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI  +      D ++  L+  T L+  + VNM  +   YKP    L+ IL  ++ FR  
Sbjct: 302 IVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWLTFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R       
Sbjct: 362 TVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEP---KAELMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L    ++ E   L  E    
Sbjct: 412 -------------------FNLSDAQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
            +IL S  RL  ++K+E+        +PRR+ +VE      + + + +  E + V +S +
Sbjct: 453 EEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEM 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG      G+  +  D ++   +  S   +V F  S G  Y 
Sbjct: 513 GWV------------RCAKGHDIDPQGLNYKAGDKYLAHAYGKSNQPAV-FIDSTGRSYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   L+L  G  I  ++   ED+       ++ A+  G     
Sbjct: 560 LDPLSLP--SARSQGEPLTGKLTLPAGATIDQLLIENEDQP------LLMASDAGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPI 710
           K +D +  N++GK  + L    ++L   T      +L+  T  G+ + FP+
Sbjct: 612 KFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFPV 662


>gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 797

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 242/664 (36%), Positives = 362/664 (54%), Gaps = 80/664 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN------ 68
           G T++++ D  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +       
Sbjct: 15  GDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGTV 74

Query: 69  -KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             K VK AR+ G+V+G++HPH + A YDAL RMAQD+S R  L++GQGNFGS DGD  AA
Sbjct: 75  GAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAA 134

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL +    LLD++ + TVDF PNYDGS +EP +L AR P  L+NG  GIAVG+A
Sbjct: 135 MRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLA 194

Query: 188 TNIPTHNLGEVVDGCVAVI-DNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           T IP+HNL E+ D CVA+I  N  +  + L  I+ GPD+P GA +I G + I +AY TGR
Sbjct: 195 TEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQIISGASDIADAYRTGR 254

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------------- 291
           GS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   K              
Sbjct: 255 GSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAEQTQ 314

Query: 292 ------RIVDIADLRDESDR-QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--M 341
                  ++D+  +RDES +    R+V E K    S +  +  L   TSL++   +N  M
Sbjct: 315 LKAAMLSVLDV--VRDESSKDAAVRLVFEPKTSRISQEEFITTLLAQTSLETSSPINLTM 372

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           V ++G KP + +L  +L  ++AFRE  V +R+++ LNK  +R H+L G  + + N+DEV+
Sbjct: 373 VGIDG-KPTQKSLRQMLNEWIAFREITVEKRSRHRLNKVLERIHILEGRQLVLLNIDEVI 431

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
            IIR + +P+ A   L+ R                            LSE Q   ILE+R
Sbjct: 432 AIIRAAEDPKAA---LIAR--------------------------FNLSERQAEDILEIR 462

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L +L  L    I  EL  L  E K+  DIL S + L  ++ +E+ +     + PRRT ++
Sbjct: 463 LRQLARLEAIKIEQELKGLREEQKKLEDILGSPATLRRLLIKEIEADAKTFEDPRRT-LI 521

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG--VVMRDEDFVTD 579
           +       E  +V E + V VS  G+V+      + +++  G G +      +  D +  
Sbjct: 522 QAEKRAVAEVKVVDEPVTVIVSQKGWVR--AQKGWASEKAAGNGGAAPEYSFKSGDTLYG 579

Query: 580 LFIVSTHTSVLFFSSLGFVYKEK---VWRLPIGS-PQAR--GKALINILSLNQGERITTI 633
            F   +  ++L F S     K+K   V+ +P+ S P AR  G+ +  ++ L+ G  +T  
Sbjct: 580 AFECRSVDTLLVFGS----SKDKSVRVYTVPVASLPGARGDGQPVTTLIELDAGTHVTHF 635

Query: 634 MPFP 637
              P
Sbjct: 636 FAGP 639


>gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
 gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
          Length = 774

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 259/735 (35%), Positives = 383/735 (52%), Gaps = 75/735 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF  NYDG F EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +    LM+ I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
           + +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 261 ELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAV 320

Query: 300 RDESDRQG-YRVVIELK--RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           RDES +    R+V E K  R    D + N L  +TSL+S  S+N+V + G  +P +  L 
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTDFV-NTLLAHTSLESNASLNLVMVGGDGRPRQKGLS 379

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 380 EILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA-- 437

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              LS+ Q   ILE+RL +L  L +  I  
Sbjct: 438 -LM--------------------------AAFGLSDRQAEDILEIRLRQLARLEKIKIEK 470

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E     ++L S S +  ++ +E+     +    RRT +++       E  +V 
Sbjct: 471 ELAELKDEKARLEELLGSESAMKRLLIKEIEGDAKQYGDERRT-LIQQEKRATFEARVVD 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S 
Sbjct: 530 EPVTVVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSN 581

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +        D++      ++ A+ +G
Sbjct: 582 GRVYSVAVAMLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNG 633

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K+ D +   ++GK  M +D+  + L+ +        I   +  G+ + F +  ++
Sbjct: 634 FGFIAKVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMK 693

Query: 715 VFAGRNSVGVRGISL 729
             +G    G RG++L
Sbjct: 694 TLSG----GGRGVTL 704


>gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4]
 gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4]
          Length = 758

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 237/716 (33%), Positives = 369/716 (51%), Gaps = 64/716 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T + +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + KCA
Sbjct: 15  VTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE R+
Sbjct: 75  RIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDSAAAYRYTEARM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL+ + +D VDFRP Y+    EPVVL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 135 TDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGASGIAVGMATSIPPHNA 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEI--------IRGPDFPTGAVIL-GRTGIKNAYATGRG 246
            E+ D  + +I N    ++ L           I GPDFPTG +++  R  +   Y TGRG
Sbjct: 195 HELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVIESRESMLETYRTGRG 254

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R     E       QIV+T+IP+QV K+ ++EKIAEL+  KR+  + D+RDES   
Sbjct: 255 GFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAKRLPLLEDIRDESAED 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V++   R     +++  L++ + L+S   +NM  L+ G  P+   L  +L  ++  R
Sbjct: 315 VRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPKVMALNEVLLEWLDHR 374

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++V+VRR+++ L     R  +L GL IA  NLDEV+RIIR     + A+  L+ R     
Sbjct: 375 KDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIR---EEDEAKDALIAR----- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++ Q  AIL +RL  L  L   +IR E ++L  E  
Sbjct: 427 ---------------------FELTDNQAEAILNMRLRNLRKLEEFEIRKEHDALSKEKA 465

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDME----DEDCIVRED 537
           E   +L+S     G I  E+  VK +     D  RR  +     D +     +  I +E 
Sbjct: 466 EIETLLASDDLQWGTIASEIGEVKKKYAKATDIGRRRTLFANAPDADVDAIQQAMIEKEP 525

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +     +  +  ++ D +   F   T   +L  ++ G 
Sbjct: 526 ITVVISEKGWI--------RALKGHSYDKVSLTFKEGDGLRVAFPAQTTDKILLVTTGGK 577

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY     +LP G  +  G+ +  ++ +   + + T   F  D +      ++ A+  GN 
Sbjct: 578 VYTLGGDKLPGG--RGHGEPIRIMVDMENDQDVLTA--FVHDPAR----KLLIASTGGNG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
                SD     R GK  M +   DE   V   + ++ + +  +  + V FP++ +
Sbjct: 630 FIVAESDITANTRKGKQVMNVGMPDETKLVVPISGDH-VAVVGENRKMVVFPLAQV 684


>gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
 gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
          Length = 752

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 214/518 (41%), Positives = 306/518 (59%), Gaps = 45/518 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  +S+ +  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++ +  N KY 
Sbjct: 9   EGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELALSANAKYK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+  EPVVL AR P+VL+NGG GIAVGMAT+I
Sbjct: 128 TEARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIAVGMATDI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+GEVV+    ++  P+     LM  + GPDFP+ A +I   + ++  Y  GRGS+ 
Sbjct: 188 PPHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYENGRGSVK 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGY 308
           +R  +   +  G+   +V+T +PYQV+ A +LE+IA  ++ K++  +ADLRDES   +  
Sbjct: 248 VR--ARFVREEGN---VVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHEEPT 302

Query: 309 RVVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAF 364
           R+VIE  R    DV  ++  L+  T L+    VNM  + L+G +P   +L G+L  ++ F
Sbjct: 303 RLVIE-PRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDG-RPRVLSLAGLLSEWLDF 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR ++ L K  DR H+L GL  A  N+DEV+RIIR    P+ A   LM+     
Sbjct: 361 RRSTVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPA---LME----- 412

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILELRL  L  L    IR E + L  E 
Sbjct: 413 ---------------------AFGLSERQAEAILELRLRHLAKLEEMKIRGEQDELEEER 451

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           K   ++L + + L  +I++EL +  +E   PRR  IVE
Sbjct: 452 KRLKELLGNEAALTDLIERELRAAGEEYGDPRRAPIVE 489


>gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223]
 gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223]
          Length = 758

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 239/716 (33%), Positives = 380/716 (53%), Gaps = 75/716 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P +DL+ LM  + GPD+PT A +I     I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +     D  +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKTLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  +ILEL+L  L  L    I  E N L  E ++ 
Sbjct: 414 -------------------FSLSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IV       + +++    E + V +S  
Sbjct: 455 EQLLGSERRLKTLIKKELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEK 514

Query: 546 GYVKRV------PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           G+V+        PLS+  + + G +     + R            ++ + +F  S G  +
Sbjct: 515 GWVRCAKGHDIDPLSL--SYKSGDQYLCSAIGR------------SNQAAVFIDSSGRAF 560

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S +++G+ +    ++  GE +  ++   ED+        + AT  G    
Sbjct: 561 ATDSHTLP--SARSQGEPITTRFNMAPGETMQHVLMGEEDQC------YLLATDAGYGFI 612

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
              +D +  N++GK  + L +  + L+ +    T+E  +L  T  G+ + F + A+
Sbjct: 613 CSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLEAL 668


>gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
 gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
          Length = 765

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 232/673 (34%), Positives = 359/673 (53%), Gaps = 69/673 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N KY K
Sbjct: 10  QGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELGLSANAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD+ PN+DG+  EP+VL +R P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNGVTGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++D P  +L+ L++++  PD+PT A +I  +  I   Y TGRGSI +
Sbjct: 189 PHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADIHKIYKTGRGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E+  GD   IV+T +P+Q + A +LE+IA  +  K++  +ADLRDESD +    
Sbjct: 249 RAVYCEEQ--GD---IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     A+ ++  L+  T L+  + V  NM+ L+G +P+   L  IL  ++ FR 
Sbjct: 304 IVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDG-RPQVKDLRSILTEWLTFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+     LM+R      
Sbjct: 363 ETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPL---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+++Q  AILEL+L  L  L    IR E + L  E  +
Sbjct: 414 --------------------FELTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSH 544
               L S  R+  ++K+E+    +     RR+ ++E +    + ++D I  E + V +S 
Sbjct: 454 LEQTLGSDRRMSTLLKKEIQEAAEMYGDDRRSPVIERVEAKALSEKDLIPSESVTVVLSD 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R GKG      G+  R  D         ++   +F  S G  + 
Sbjct: 514 KGWA------------RVGKGHDLDVEGLNYRAGDGYRASARGKSNQPAVFLDSAGRAFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +    +L  G     ++   ED        ++ A+  G     
Sbjct: 562 TDAHSLP--SARSQGEPMTGRFNLTSGASFEHVV-MGEDAQ-----VLLMASDAGYGFIT 613

Query: 661 KLSDFIQINRSGK 673
              D +  N++GK
Sbjct: 614 DFKDLVSKNKNGK 626


>gi|194293785|gb|ACF39987.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293791|gb|ACF39990.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293797|gb|ACF39993.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293801|gb|ACF39995.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293815|gb|ACF40002.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 232/305 (76%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|194293809|gb|ACF39999.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 232/305 (76%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKLASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|221482404|gb|EEE20752.1| DNA gyrase subunit A, putative [Toxoplasma gondii GT1]
          Length = 1594

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/433 (41%), Positives = 272/433 (62%), Gaps = 32/433 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
               +E++ S+L YA + IL RA+PD+RDGLKPVHRR+++ M Q+ +  +  + KCAR+ 
Sbjct: 276 TQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHLHPSGSFRKCARVV 335

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK- 137
           GEV+GK+HPHG+ A+YDAL R+AQ +  R  LIEG GNFGSVDGDPPAA RYTECRL + 
Sbjct: 336 GEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGSVDGDPPAAMRYTECRLTRF 395

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               LL +L    V FRPN+D + +EPVV  A  P VL+ G  GIAVGM+T IP HNL E
Sbjct: 396 CEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMSTQIPPHNLHE 455

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +A+I +P++    L+ ++ GPDFPTG +++    I  AY  GRG +++RG  H+E
Sbjct: 456 ILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIPGAYKEGRGRVLLRGRFHLE 515

Query: 258 ---------------------KTSGDRE---------QIVVTEIPYQVNKAAMLEKIAEL 287
                                +   DR          ++V+TE+PY VNK+ +++ IA++
Sbjct: 516 GEDDDGDTVPGRDRNAEDEAERDEADRHVRNGRKNERRLVITELPYGVNKSTVMQVIAQM 575

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NG 346
           +  K +  +  +RDESD +G RVV+ L+R A A  IL  L ++T+LQ    ++++AL  G
Sbjct: 576 ISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVYIPMHLIALEKG 635

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            KP RF+L  +L +++AFR   + R       + + R+H+L GL  AV+ +D+VV+ +R 
Sbjct: 636 TKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVSLMDDVVKTVRE 695

Query: 407 SPNPETARRELMQ 419
           S + + A+++L +
Sbjct: 696 SLSADDAKQKLTE 708



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 22/138 (15%)

Query: 691  TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            T    I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V     + + 
Sbjct: 1320 TNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEA 1379

Query: 751  RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +    K          GD++E  S KN+SS E              E  +L V+  GFGK
Sbjct: 1380 KTESRKE---------GDSDETQS-KNESSNEK------------AEPSLLIVTAAGFGK 1417

Query: 811  RTSSYDFRISNRSGKGIR 828
            R      R+  R G G+R
Sbjct: 1418 RIRVSALRMQRRRGVGVR 1435


>gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
 gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
          Length = 758

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 240/714 (33%), Positives = 380/714 (53%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A I+  +  I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E  SG   +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTVE--SG---EIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKTLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKV---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I  E N L  E ++ 
Sbjct: 414 -------------------FSLTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IV+      + +++    E + V +S  
Sbjct: 455 EQLLGSERRLKTLIKKELIQDAETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG     +       D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   E+E  +     + AT  G      
Sbjct: 563 DSHTLP--SARSQGEPITTRFNMAPGETMQHVI-MGEEEQCY-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L +  + L  +     +E  +L  T  G+ + F + A+
Sbjct: 615 YNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREMSLLAITNEGRMLLFSLEAL 668


>gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7]
 gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7]
          Length = 754

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 255/789 (32%), Positives = 408/789 (51%), Gaps = 82/789 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++  Y TGRGS+ +
Sbjct: 189 PHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   IV+  +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRVE--DGD---IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  ++  L+  T L++ + VN+  + L+G KP+   L  +L  ++ +R 
Sbjct: 304 IVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDG-KPQVKDLRQLLSEWLQYRI 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+     LM+R      
Sbjct: 363 GTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+ RL +L  L    IR E   L  E K 
Sbjct: 414 --------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKR 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  ++++EL+   +     RR+ IV       + + + +  E + V +S 
Sbjct: 454 LQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     ++  P+D++    LYV+ A+  G     
Sbjct: 562 LPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDDDA----LYVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S +     
Sbjct: 614 KGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK 673

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G   +G+ G  +A  ++ ++   VL A A           + A +R +S   +++   
Sbjct: 674 GKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLKGDDLEHY 725

Query: 776 KNDSSVEGN 784
           K +    GN
Sbjct: 726 KGERGRRGN 734


>gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda]
          Length = 701

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 246/724 (33%), Positives = 376/724 (51%), Gaps = 73/724 (10%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG +A Y+
Sbjct: 3   VIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSACYE 62

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + A  LL +LG+ TVD+
Sbjct: 63  AMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSRYAEILLSELGQGTVDY 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN  EV    VA++DNP   L
Sbjct: 122 VANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQSSL 181

Query: 214 DALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D L+  I+GPDFPT A +I  R  I+  Y TGRGS+ +R V   E++     +IV++ +P
Sbjct: 182 DDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEES-----EIVISALP 236

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRY 330
           +Q + A +LE+IA  +R +    + DLRDESD +    ++ + R    D+  ++N L+  
Sbjct: 237 HQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFAT 296

Query: 331 TSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           T L+  +  ++NM+ L+  +P    L  IL  ++++R E V RR  Y L K   R H+L 
Sbjct: 297 TDLEKSYRINMNMIGLD-RRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHILE 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL  A  N+DEV+ IIR    P+     L+ R                            
Sbjct: 356 GLLCAFLNIDEVIHIIRSEDEPKPV---LVAR--------------------------FG 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LS+ Q  AILEL+L  L  L    IR E ++L  E      +L+S  +L  +IK+E+++ 
Sbjct: 387 LSDTQAEAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKEEIMAD 446

Query: 509 KDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            +     RR+ + E      M + D +  E + + +S  G+V            R  KG 
Sbjct: 447 AETYGDARRSPLQERSEARAMSEHDFVPSEPVTIVLSEGGWV------------RSAKGH 494

Query: 567 ----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
               SG+  +  D         ++  V+F  S G  Y      LP  S + +G+ L   L
Sbjct: 495 DIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLP--SARGQGEPLTGKL 552

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +   G  I  ++       + +N  ++ A+  G       SD +  NR+GK  + L    
Sbjct: 553 TPPPGATIEHVL------MAADNQKLLMASDAGYGFVCTFSDLVACNRAGKAMLTLPENA 606

Query: 683 EILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISM 738
           ++L+      ++D+LL  T+ G+ + FP+  +   +   G   V +     A G+  +  
Sbjct: 607 KVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKW 666

Query: 739 AIVL 742
            +VL
Sbjct: 667 LLVL 670


>gi|194293771|gb|ACF39980.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293773|gb|ACF39981.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293777|gb|ACF39983.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293779|gb|ACF39984.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293781|gb|ACF39985.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293787|gb|ACF39988.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293793|gb|ACF39991.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293803|gb|ACF39996.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293811|gb|ACF40000.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 232/305 (76%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894]
          Length = 738

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 257/744 (34%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGFGFVAKVG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D     L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
 gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
          Length = 765

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 317/556 (57%), Gaps = 51/556 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M Q+ ++    + K A
Sbjct: 17  IVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPASGFKKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG+ A YDA+ R+AQD++LR  L+EGQGNFG++DGD  AA RYTE RL
Sbjct: 77  RVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  L++ L   TVDF P Y+   +EP ++   +PN+L NG  GIAVGMATNIP+HN+
Sbjct: 137 TKTAMRLMEGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGASGIAVGMATNIPSHNV 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVS 254
            E+VD  + VIDNP ++   LMEI +GPDF TG V+   T  I +AY TGRGS  +RG  
Sbjct: 197 AEIVDATLEVIDNPHVEHARLMEIFKGPDFATGGVVPESTETISHAYETGRGSFRVRGRF 256

Query: 255 H-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           H             IE+  G + Q+V++EIPYQV K  ++E+IA  + ++++  + D+RD
Sbjct: 257 HAAEAEKEEDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAAAIADRKLPILEDVRD 316

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKA 360
           ESD Q   V++   R    +++   +Y+ T +++ F +N+  L+  + P    L  +L+ 
Sbjct: 317 ESDEQIRIVLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLDRTRTPMVMGLKELLEN 376

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A + +++ RR+++ L++   R  ++ G  IA  NLD V+ IIR    P+         
Sbjct: 377 WIASQIDILQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEIIRTEDEPKPV------- 429

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                       ++D+            L++ Q  AIL +RL  L  L    +R E + L
Sbjct: 430 ------------MMDE----------FKLTDRQAEAILNMRLRSLRKLEEMQLRGEKDEL 467

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DT---PRRTRIVEG--LLDMEDEDCI 533
             E  E   +L S +R    +K++L +++ E   DT    RRT I E    ++   +  I
Sbjct: 468 LKEQDELEKLLGSPARQRTRLKRDLGALRKEYSEDTALGARRTTIEEAAPAVEFSMDAMI 527

Query: 534 VREDMVVTVSHLGYVK 549
            +E + V +S  G+++
Sbjct: 528 EKEPVTVILSQKGWIR 543


>gi|307069700|ref|YP_003878177.1| DNA gyrase subunit A [Candidatus Zinderia insecticola CARI]
 gi|306482960|gb|ADM89831.1| DNA gyrase A subunit [Candidatus Zinderia insecticola CARI]
          Length = 511

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/398 (44%), Positives = 273/398 (68%), Gaps = 1/398 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M NSY+ YAINVI  RA+PD+ DGLKPVHRRIL+ M ++   +   ++KCARI GEVMGK
Sbjct: 1   MSNSYINYAINVISNRALPDIIDGLKPVHRRILYTMYKIKNNYKNNFIKCARIVGEVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDAL RMAQ++SL+  LI+GQGNFGS+DGD  AA RYTEC+L K ++    
Sbjct: 61  YHPHGDNSIYDALVRMAQNFSLKYTLIKGQGNFGSIDGDNAAAMRYTECKLNKISNEFFH 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  NYD   +EP+VL  R PN+L+NG  GIAVGM+TNIP HN  + ++  + 
Sbjct: 121 DINKNTVKFINNYDNKEKEPLVLPCRIPNLLINGSYGIAVGMSTNIPPHNFTDSINTAIY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++   +  +  L++I++ PDFPTG  I+  + + NAY  G+GS+ I      EK +  + 
Sbjct: 181 LLLFSECKIKDLIKILKAPDFPTGGNIIKISKLHNAYYYGKGSVTINSKFIFEKIN-KKT 239

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQ+NK  +LE+I +L++ K+I  I +L+DES++ G R+VIELK+  + + IL
Sbjct: 240 NIIITEIPYQINKKKILEQIIKLIKNKKINFINNLKDESNKLGIRIVIELKKNLNKNKIL 299

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L++ TSLQ   ++N++AL    P++  L  IL  F+ +R+++++++ K++L K + + 
Sbjct: 300 KILFKKTSLQHTININIIALIKNIPKKLNLKKILIYFIKYRKKLIIKKLKFILKKLKKKK 359

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           ++L G  + + N+++ ++I++ S N   A + +   +W
Sbjct: 360 YLLEGFVVVINNINKFIKIVKKSKNNIEAIKNITSNNW 397


>gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1]
 gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1]
          Length = 795

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 240/636 (37%), Positives = 348/636 (54%), Gaps = 73/636 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K VK AR+ 
Sbjct: 25  QRAYLEYALSVVKGRALPDVTDGLKPVQRRILYAMDRMGLSYSGPNHNTAAKPVKSARVV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL RMAQD++ R  L++GQGNFGS DGD  AA RYTE RL K 
Sbjct: 85  GDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKI 144

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++   TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 145 TGLLLDEIDMGTVDFVPNYDGSTQEPQQLPARLPFALLNGASGIAVGLATEIPSHNLREV 204

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIE 257
            D CVA+I  P +  + L +II GPD+P G  +I   + I++AY TGRGS+ +R    IE
Sbjct: 205 ADACVALIKRPQLSDEELFQIIPGPDYPGGGQIISSASDIQDAYRTGRGSLKLRARWKIE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+VVTE+P  V+   +LE+I ++   K                  ++ + D +
Sbjct: 265 ELARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDGV 324

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLI 355
           RDES +    R+V E K G      ++  L  +TSL+S  S+N  M+ L+G +P + +L 
Sbjct: 325 RDESSKDAPVRLVFEPKTGKVPQQELITALLAHTSLESSSSINLTMIGLDG-RPVQKSLR 383

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++AFR+  V RR+++ L K  DR H+L G    + N+D+V+ IIR S  P  A  
Sbjct: 384 LMLEEWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPRQA-- 441

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LID                LSE Q   ILE+RL +L  L    I  
Sbjct: 442 --------------LID-------------AFALSERQADDILEIRLRQLARLEAIKIEQ 474

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  DIL S S +  +I +E+ +   +    RRT +++    +  E  +V 
Sbjct: 475 ELKELRTEQGKLEDILGSESTMRRLICKEIEADAKQFADARRT-LIQEEKKVVAEVKVVD 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSS 594
           E   V +S  G+V+          R+G    +G +  +  D +   F   T   +L F S
Sbjct: 534 EPTTVIISDKGWVR---------TRQGHGVDAGTLSFKAGDSLHGTFECRTVDQLLAFGS 584

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            G +Y   V +LP G  +  G+ +  ++ L  G +I
Sbjct: 585 NGRIYSVPVAQLPGG--RGDGQPVTTLIELEAGTQI 618


>gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
 gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
          Length = 774

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 259/740 (35%), Positives = 385/740 (52%), Gaps = 75/740 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF  NYDG F EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +    LM+ I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
           + +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 261 ELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAV 320

Query: 300 RDESDRQG-YRVVIELK--RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           RDES +    R+V E K  R    D + N L  +TSL+S  S+N+V + G  +P +  L 
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTDFV-NTLLAHTSLESNASLNLVMVGGDGRPRQKGLS 379

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A  
Sbjct: 380 EILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA-- 437

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                              LS+ Q   ILE+RL +L  L +  I  
Sbjct: 438 -LM--------------------------AAFGLSDRQAEDILEIRLRQLARLEKIKIEK 470

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E     ++L S S +  ++ +E+     +    RRT +++       E  +V 
Sbjct: 471 ELAELKDEKARLEELLGSESAMKRLLIKEIEGDAKQYGDERRT-LIQQEKRATFEARVVD 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S 
Sbjct: 530 EPVTVVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSN 581

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP G  +  G  + +++ L  G  +        D++      ++ A+ +G
Sbjct: 582 GRVYSVAVAMLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNG 633

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                ++ D +   ++GK  M +D+  + L+ +        I   +  G+ + F +  ++
Sbjct: 634 FGFIARVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMK 693

Query: 715 VFAGRNSVGVRGISLAKGDQ 734
             +G    G RG++L   D+
Sbjct: 694 TLSG----GGRGVTLMALDE 709


>gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1]
 gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 771

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 255/735 (34%), Positives = 370/735 (50%), Gaps = 73/735 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++++   + +YL YAI+V+ GRA+PD+ DG KPV RRIL+ M ++ +    K  K A +
Sbjct: 19  SLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYAMNELSLNSAAKPRKSAAV 78

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+G GNFGS DGD  AA RYTE RL  
Sbjct: 79  VGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYTEARLTP 138

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LLD++   TV+F+PNYDGS +EP +L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 139 ISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGASGIAVGMATEIPSHNLTE 198

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    VA+I NP I    LME+I GPDFP G  +I  +  I   Y +GRGS+ +R    I
Sbjct: 199 VAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIAEMYQSGRGSLKVRARWKI 258

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E  +  + Q V+TE+P  V+   +LE+I EL   K                  I+ + D 
Sbjct: 259 EDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKSLTPEQQAQKAAILGLLDA 318

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLI 355
           +RDES R    R+V E K +       +N L   TSL++  S+N+V + G  +P +  L 
Sbjct: 319 VRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSASLNLVMIGGDGRPRQKNLT 378

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +++FR E V RRT++ + K  DR H+L G    + N+D+V+RIIR S  P+ A  
Sbjct: 379 DILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNIDKVIRIIRESDEPKPALI 438

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           E  +                             LS+ Q   ILE+RL +L  L    I+ 
Sbjct: 439 EAFR-----------------------------LSDRQAEDILEIRLRQLARLEAIKIQQ 469

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E     D+L + S +  ++ +E+          RRT I+E       E  ++ 
Sbjct: 470 ELAELRNEKSTLQDLLDNPSSMKKLVIKEIEGDAKTYGDARRT-IIEEAERATFEQKVID 528

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA+   G   +    +  D +   F   T  ++L F S 
Sbjct: 529 EPVTVIISQKGWV--------RARTGHGHDATQFTFKAGDSLYGAFECRTVDNLLAFGSN 580

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP  + +  G  +  +L L  G  I      P D +      ++ A+   
Sbjct: 581 GRVYTIAVNALP--NARGDGVPVTTLLELASGSSILHYFAGPADTT------LLLASDAA 632

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
                K SD     + GK    LD     L+     T  + +   +  G+ + F +  ++
Sbjct: 633 AGFIAKASDMFGRVKGGKSFFTLDEGALPLAPTPVPTDASAVACVSGNGRLLVFGLDEMK 692

Query: 715 VFAGRNSVGVRGISL 729
                 S G RG++L
Sbjct: 693 TL----SSGGRGVNL 703


>gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 259/742 (34%), Positives = 385/742 (51%), Gaps = 77/742 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSF EP +L  R P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKAMLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIETDAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGFGFVAKVG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDAGAAPLAPMPVLPDAAQVACLSSGGRLLVFGMDEMKALSG---- 696

Query: 723 GVRGISL----AKGDQVISMAI 740
           G RG+ L    AK   V ++AI
Sbjct: 697 GGRGVILMALDAKETLVQALAI 718


>gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
 gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
          Length = 985

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 240/680 (35%), Positives = 355/680 (52%), Gaps = 81/680 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQILL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN  E+     
Sbjct: 138 SELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNAREIGQALT 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++DNPD  L  +M+ ++GPD+PT A VI     IK  Y TGRGSI +R V   E+    
Sbjct: 198 MLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRGSIRMRAVWQKEEGCA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA L+R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHENPTRLVIVPRSNRVDL 312

Query: 323 --ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++  L+  T L+  + V  NM+ L+  +P    L+ IL  ++ +R + V  R  + L 
Sbjct: 313 EQVMYYLFVNTDLEKSYRVNLNMIGLDN-RPAVKGLLTILNEWLVYRRQTVTNRLNHRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R  +L GL IA  N+DEV+ IIR+   P   + ELM+R                  
Sbjct: 372 KVLRRLEILKGLLIAYLNIDEVIEIIRYEDEP---KAELMRR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS++Q  AILELRL  L  L    ++ E + L  E      +L+S  RL 
Sbjct: 411 --------FALSDIQAEAILELRLRHLAKLEEIKLQAESDELEKERDSIEKLLNSPRRLN 462

Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+E+ +   E    RR+  R  E    + ++D +  E + + +S +G+V        
Sbjct: 463 TLLKKEIEADAKEFGDERRSPIRPQEEAKVVNEQDMLPSEPVTIVLSEMGWV-------- 514

Query: 557 RAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG     S +  R  D         ++  VLF  S G  Y      +P G   
Sbjct: 515 ----RSAKGHEIDPSTMSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYSLSPNDMPSGR-- 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRRNKLSDFI 666
                       +QGE +T  + FP D S    L        + ATK G        +  
Sbjct: 569 ------------SQGEPLTGKLTFPPDASVKYMLAGAAKQEYLLATKEGYGSVLSYEEME 616

Query: 667 QINRSGKIAMKLDSRDEILS 686
             N++GK  + +    E+L+
Sbjct: 617 TKNKTGKGLLTVSDETELLA 636


>gi|315930381|gb|EFV09458.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 303

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 229/307 (74%), Gaps = 5/307 (1%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY 
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDE
Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296

Query: 303 SDRQGYR 309
           S+++G R
Sbjct: 297 SNKEGIR 303


>gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T]
 gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T]
          Length = 814

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 242/719 (33%), Positives = 377/719 (52%), Gaps = 68/719 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+  RA+P + DGLKPV RRILF M +M +    K+VK AR+ G+V+GKY
Sbjct: 74  ERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVVGDVIGKY 133

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL   A  LL +
Sbjct: 134 HPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAELLLSE 193

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNL EV +    +
Sbjct: 194 IDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVAEATCHL 253

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P+  LD ++ ++ GPDFP G  ++     I+ AYATGRGS+ +R    IE+ +  + 
Sbjct: 254 IRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIEELARGQW 313

Query: 265 QIVVTEIPYQVNKAAMLEKIAEL------------------VREKRIVDIADLRDE-SDR 305
           + +V E+P+ V+ A +L +I  L                  +R+  +  +  +RDE SD+
Sbjct: 314 RAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTVRDESSDK 373

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+E K    + D  +  L  +TSL++  SVNM  +    +P++  L+ IL+ ++ 
Sbjct: 374 APVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQILREWID 433

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RRT++ L++   R H+L G  IA  +++EV+R+IR S  P+ A          
Sbjct: 434 FRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPA---------- 483

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 LS+VQ   ILE+RL +L  L    I  EL  L  E
Sbjct: 484 ------LI-------------AAFGLSDVQAEDILEIRLRQLARLEGFKIEKELAELKDE 524

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L SR+ +  +I +E+     +    RRT +         E  +  E + V VS
Sbjct: 525 RAGLQHLLDSRAAMTKLILKEIQDDAKKYGDDRRTLVEAVAAVAPAEISVPDEPVTVIVS 584

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        R+++  G   +G+  +  DF   +    T   ++     G  Y  KV
Sbjct: 585 KNGWV--------RSRQGHGIDPAGIAYKAGDFGFAVLETRTTWPLIVIDGNGRAYTVKV 636

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  +  ++    G ++  ++       + +++Y  FA   G      ++
Sbjct: 637 SELPGG--RGDGAPITTLVEFQDGGKLAQVV-----TDTPDSVY-FFANSGGYGFLCSVA 688

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D     R+GK  M L+  +++L+      +  I   ++ G+ + FP   ++  +G   V
Sbjct: 689 DASSRQRAGKAFMSLEKGEKVLAPAKVFGDW-IAAASENGRILVFPRPEMKTQSGGRGV 746


>gi|194293783|gb|ACF39986.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 232/305 (76%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|47459295|ref|YP_016157.1| DNA topoisomerase IV subunit A [Mycoplasma mobile 163K]
 gi|47458625|gb|AAT27946.1| topoisomerase IV subunit A [Mycoplasma mobile 163K]
          Length = 858

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 239/707 (33%), Positives = 372/707 (52%), Gaps = 47/707 (6%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M N Y  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+   K + K AR+ G+V+GK
Sbjct: 19  MSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPFKKSARVVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RM+Q+W + + LI+  GN GS+D DP AA RYTE RL K +  LL 
Sbjct: 79  YHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMRYTEARLSKISSLLLS 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+  DTV F  N+D S +EP VL A +PN+LVNG  GIA G AT IP HNLGEV+DG +A
Sbjct: 139 DIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEIPPHNLGEVIDGIIA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I NP+I ++ L  II+GPDFPTG +I G  GIK A  +GRG I I     + K      
Sbjct: 199 KIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAFSGRGRITITSKYEVHKN----- 253

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY V K+ ++ +I E+  +K I  + ++RDE++R G ++VI+L+ GA A  I+
Sbjct: 254 QIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIKIVIDLEAGADASKIM 313

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L + T LQ  +S N +A++   P    L  +++AF+   + +   +  + L K   R 
Sbjct: 314 KFLMQKTELQLYYSYNNIAIHNNAPVLMNLHDLIQAFLDHVKVIQTNKINFELEKLSKRL 373

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
            ++ G        D+V+ +IR S   +    E + + +N                     
Sbjct: 374 EIIEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFN--------------------- 412

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                SE+Q  +I  LRL RL+    ++   E   L   I     +LSS S     + + 
Sbjct: 413 ----FSEIQAESIANLRLYRLSKTDVEEFIKEKQELETRINFLKTLLSSESEFNAELIKI 468

Query: 505 LLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K    TPR+T I +    LD+   D I  E+  V +S  GY+KR    ++ +    
Sbjct: 469 FKDIKKTYATPRKTEIKDQALKLDVSLSDLIQAEETFVGISRDGYIKRFNQKIHDSNE-- 526

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                  +++++D +  L    T   +L F++ G      ++++     +  G  L +  
Sbjct: 527 ---MQTYLLKEDDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFA 583

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKL 678
           +L   E +  ++ + +D S   +  +   TK G  ++ +L +F +++R  K    I  K 
Sbjct: 584 TLLPNEFLIKVL-YVDDFSK--DFSITLITKKGFGKKVQLPEF-EVSRENKSYPAIKFKK 639

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           D  DE+L+        DILL     +  +F  +  + + G  + GV+
Sbjct: 640 DG-DELLNAFITNDRLDILLVNTKLEVYKFSENDFKTY-GIKAAGVK 684


>gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 784

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 246/684 (35%), Positives = 358/684 (52%), Gaps = 92/684 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYV 72
           S+    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +         + V
Sbjct: 20  SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLAFGGPNGATGARPV 79

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+G++HPHG+ A YDAL RMAQD+S R  LI+GQGNFGS DGD  AA RYTE
Sbjct: 80  KCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTE 139

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL +    L+D++ + TVDF PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+
Sbjct: 140 ARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL EV D CVA+I  P +  + L  +I GPD+P G  I+     I  AY TGRGS+ +R
Sbjct: 200 HNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIISSGAEIAAAYRTGRGSLKVR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------------------- 291
               IE+ +  + Q+VV E+P  V+   +LE+I E+   K                    
Sbjct: 260 ARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKIKLGKKALSLDQVQLKQSML 319

Query: 292 RIVDIADLRDESDR-QGYRVVIELK--RGASADVILNQLYRYTSLQSLFSVN--MVALNG 346
            ++D+  +RDES +    R+V E K  R A A++I N L  +TSL+S   +N  M+ L+G
Sbjct: 320 AVLDV--VRDESSKDAAVRLVFEPKTSRTAQAELI-NTLLSHTSLESSSPINMTMIGLDG 376

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P + +L  +L  ++AFR+  + +R+++ L+K   R H+L G    + N+DEV+ IIR 
Sbjct: 377 -RPTQKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQTVLLNIDEVIAIIRQ 435

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S  P++A   L+ R                            LS+ Q   ILE+RL +L 
Sbjct: 436 SDEPKSA---LIAR--------------------------FSLSDRQAEDILEIRLRQLA 466

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            L    I  EL +L  E     DIL + + L  ++ +E+ +   +   PRRT     L+ 
Sbjct: 467 RLEAIKIEQELKTLREEQGRLEDILGNPTALRRLMIKEIEADAKQFADPRRT-----LIQ 521

Query: 527 MEDEDC----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR--SGVVMRDEDFVTDL 580
            E +      ++ E + V VS  G+V+           RGG G   S    +  D +   
Sbjct: 522 AEKKSVLEVKVLDEPVTVVVSSKGWVR----------ARGGHGHAPSSFAFKAGDALYGT 571

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F   T  ++L F S G +Y   V  LP    +  G+ +  ++ L  G ++      P   
Sbjct: 572 FECRTVDTLLAFGSNGRLYSVPVAMLP--GARGDGQPVTTLIDLESGTQLLHYFAGPASA 629

Query: 641 S---SWNNLYVVFATKHGNVRRNK 661
               S +  Y   AT    V RN+
Sbjct: 630 MLLLSSSGGYGFLATVENMVSRNR 653


>gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668]
 gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668]
          Length = 772

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 257/744 (34%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGFGFVAKVG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D     L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
 gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
          Length = 773

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 259/737 (35%), Positives = 387/737 (52%), Gaps = 91/737 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P+  DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 26  ERAYLDYAISVVKGRALPECADGQKPVQRRILYAMNEMGLGNNAKPVKSARVVGDVLGKY 85

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A YDAL RMAQ+++LR  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 86  HPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 145

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +   TVDF PNYDGSFQEP +L AR P VL+NG  GIAVGMAT+IP HN+ EV    + +
Sbjct: 146 VDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATDIPPHNIREVAAATIHL 205

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P+ DLD +M  +  PDFP GA I+   + +K  YA GRGSI +R    IE+ +  + 
Sbjct: 206 IKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKEIYAGGRGSIKVRARWDIEEMARGQW 265

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-LRDESDRQ 306
           Q+VV E+P   + A +LE+I EL   K                 +++ + D +RDES ++
Sbjct: 266 QLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGLSTEQQNLKAQVLAMLDAVRDESGKE 325

Query: 307 -GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+V E K R  S +   N L  +TSL++  S+N+V++ N  +P +  LI +L  ++ 
Sbjct: 326 NAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSINLVSIDNAGRPGQRGLIAMLLDWIE 385

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR+++ L +  DR HVL G  IA  N+DEV+++IR S  P+ A  E  +    
Sbjct: 386 FRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNIDEVIKVIRESDEPKPALIEAFK---- 441

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 442 -------------------------LSDRQAEDILEIRLRQLARLEKIKIEQELAKLAEE 476

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +   +L+   +L   I  E+    D     RRT ++E       E  +V E   V VS
Sbjct: 477 KADLEALLADEGKLKTRIIGEIRKDTDTYGDDRRT-LIEEAEKASVEVKVVEEPTTVIVS 535

Query: 544 HLGYVKRVPLSVYRAQRRG-GKGRSGVVMRDEDFVTDLFIVSTHTSVLFF---SSLGFVY 599
              +++          R+G G   +    +  D +   F   T  +   F   ++LG   
Sbjct: 536 QKFWIR---------NRQGHGHDAAQFGFKVGDALYAAFECKTTDNTYLFGAGNALG--- 583

Query: 600 KEKVWRLPIGS-PQARGKALI--NILSLNQGERITTIMPFPEDES---SWNNLYVVFATK 653
             KV+ +P+ + P  RG  +   +++ LN G  ++  +  P  +    + +  Y   AT 
Sbjct: 584 --KVFSVPVAAWPGGRGDGIPAQSLVELNGGS-LSHALAAPATQPVFLACSAAYGFLATA 640

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISA 712
            GN+            ++GK  + L+  +++LS       +D + + ++ G+   F +  
Sbjct: 641 -GNMESRM--------KAGKQFISLNPGEKLLSPALLQPTDDRVAVLSESGRFHVFMLDE 691

Query: 713 IRVFAGRNSVGVRGISL 729
           ++  +G    G RG+ L
Sbjct: 692 LKQLSG----GGRGVQL 704


>gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3]
 gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 755

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 241/711 (33%), Positives = 384/711 (54%), Gaps = 65/711 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  CV ++DNP  DL  LME + GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADIAKIYQTGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  IE       ++V++ +P+Q +   +LE+IA  ++ K++  + DLRDESD +     
Sbjct: 250 AVYTIENG-----EVVISALPHQASSGKILEQIAAQMQAKKLPMVTDLRDESDHESPVRM 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           V++        D ++  L+  T L+  + VN+  + LNG +P+   L  +L  ++ FR  
Sbjct: 305 VIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNG-RPQVKGLRELLTEWLVFRMT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L  L IA  N+DEV+ IIRF  +P+    ELM R       
Sbjct: 364 TVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDPKA---ELMTR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL+L+L  L  L    I++E + L  E  + 
Sbjct: 414 -------------------FELSDKQADAILDLKLRHLAKLEEFKIKSEQSELEAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLD-MEDEDCIVREDMVVTVSHL 545
             +LSS  R+  +IK+EL+   ++    RR+  +V G    + +++ +  E + V +S  
Sbjct: 455 QLLLSSERRMKTLIKKELIKDGEDYGDDRRSPLVVRGESKALTEQELVPAESVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+     G+S      ++F+      S   SV F  + G  +  +   
Sbjct: 515 GWVR-------CAKGHEVDGKSLSYKAGDEFLCSAPGRSNQPSV-FIDTSGRAFATETHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSD 664
           LP  S +++G+ +    +L  G  +  ++    DES     Y++ +   +G +  NK  D
Sbjct: 567 LP--SARSQGEPITTRFNLAPGATMEHVL--LADES---QCYILASDAGYGFIAANK--D 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            I  N++GK  + L +  ++L  +    ++   IL  T  G+ + F + A+
Sbjct: 618 MISRNKAGKALLSLPANAKVLLPQKVDKSKAQSILAITNEGRMLLFSLDAL 668


>gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344]
 gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1]
 gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229]
 gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247]
 gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
 gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344]
 gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1]
 gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229]
 gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247]
 gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
          Length = 772

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 257/744 (34%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQRGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGFGFVAKVG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D     L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b]
 gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a]
 gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98]
 gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14]
 gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91]
 gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210]
 gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC
           13177]
 gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112]
 gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215]
 gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
 gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b]
 gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a]
 gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
          Length = 772

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 257/744 (34%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGFGFVAKVG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D     L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKETLVQALAIDA 720


>gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
 gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
          Length = 774

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 258/734 (35%), Positives = 379/734 (51%), Gaps = 73/734 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF  NYDG F EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLAEIDQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I    LME + GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKITHAELMEHVPGPDFPGGGQIISSEAEISAAYETGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
             +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 261 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQGKQTMLGLLDAV 320

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +    R+V E K         +N L  +TSL+S  S+NMV + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNMVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                              LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 LM--------------------------AAFGLSDRQAEDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S S +  ++ +E+ +   +    RRT +++       E  +V E
Sbjct: 472 LAELRDEKAKLEELLGSESAMKRLLIKEVEADAKQYGDERRT-LIQQEKRATYEARVVDE 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 531 PVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDSLYAAFQCRTPDTLIAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ +  G  +        D++      ++ A+ +G 
Sbjct: 583 RVYSVAVASLPGG--RGDGVPVTSLIEMESGSHLMHYYAASADQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F I  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDATQVACLSSAGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISL 729
            +G    G RG++L
Sbjct: 695 LSG----GGRGVTL 704


>gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9]
 gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 772

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 257/744 (34%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 27  ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 87  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV    VA+
Sbjct: 147 IDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAL 206

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 207 IRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLARGQW 266

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 267 QLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDESGKD 326

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K R       +N L  +TSL+S  ++N+V +    +P +  L  IL  +V 
Sbjct: 327 APVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILGEWVR 386

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A          
Sbjct: 387 FRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA---------- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 437 ------LIS-------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 477

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+ +   +    RRT +++       E  +V E + V VS
Sbjct: 478 KAKLEELLANESAMKRLMIKEIEADAKQYGDERRT-LIQQEKRATFEAKVVDEPVTVVVS 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T  +++ + S G VY   V
Sbjct: 537 QKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAV 588

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G     K+ 
Sbjct: 589 QVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGFGFVAKVG 640

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D     L+ +      + +   +  G+ + F +  ++  +G    
Sbjct: 641 DMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKTLSG---- 696

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   D   ++   L  DA
Sbjct: 697 GGRGVILMALDAKEALVQALAIDA 720


>gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185]
 gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195]
 gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185]
 gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195]
 gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678]
          Length = 758

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 238/716 (33%), Positives = 380/716 (53%), Gaps = 75/716 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A +I     I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +     D  +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKTLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  +ILEL+L  L  L    I  E N L  E ++ 
Sbjct: 414 -------------------FSLSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IV       + +++    E + V +S  
Sbjct: 455 EQLLGSERRLKTLIKKELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEK 514

Query: 546 GYVKRV------PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           G+V+        PLS+  + + G +     + R            ++ + +F  S G  +
Sbjct: 515 GWVRCAKGHDIDPLSL--SYKSGDQYLCSAIGR------------SNQAAVFIDSSGRAF 560

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP  S +++G+ +    ++  GE +  ++   ED+        + AT  G    
Sbjct: 561 ATDSHTLP--SARSQGEPITTRFNMAPGETMQHVLMGEEDQC------YLLATDAGYGFI 612

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
              +D +  N++GK  + L +  + L+ +    T+E  +L  T  G+ + F + A+
Sbjct: 613 CSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLEAL 668


>gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3]
 gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 757

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 233/710 (32%), Positives = 378/710 (53%), Gaps = 63/710 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  C+ ++DNP  DL  +ME + GPD+PT A +I   + I   Y TGRGSI  R
Sbjct: 190 HNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDISKIYTTGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE       ++V+T +P+Q +   +LE++A  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYKIENG-----EVVITALPHQASGGKILEQVAAQMQAKKLPMVVDLRDESDHENPVRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D ++  L+  T L+  F VN+  + LNG +P+   L  IL  ++ +R +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNG-RPQVKGLKQILTEWLEYRFQ 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L  L  A  N+DEV+ IIR+  NP+    ELM R       
Sbjct: 364 TVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNPKA---ELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+++Q  AIL+L+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FNLTDIQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +LSS  R+  +IK+EL+   +     RR+ +VE      + +++    E + V +S  
Sbjct: 455 QLLLSSDRRMKTLIKKELIQDGETYGDDRRSPLVERGESKALTEQELAPVEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+    K   G       F+      S   SV F  S G  +  +   
Sbjct: 515 GWVRCAKGHDIDAKALSYKSGDG-------FLCSAAGRSNQPSV-FIGSTGRAFATETHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +    +L+ GE +  ++   +D+      + + A+  G        D 
Sbjct: 567 LP--SARSQGEPITTRFNLSPGEVMEHVLLGDDDK------FYLLASDAGYGFVGSYKDM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAI 713
           +  N++GK  + L +  +++  +   +     IL  T  G+ + F + A+
Sbjct: 619 VSRNKAGKALLSLPANAKVIVPQIVDKSKVESILAITNEGRMLLFSLEAL 668


>gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2]
 gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2]
          Length = 745

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 242/711 (34%), Positives = 377/711 (53%), Gaps = 71/711 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K AR 
Sbjct: 7   SFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKYKKSART 66

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE +L
Sbjct: 67  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYTESKL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL +LG+ TV++ PN+DG+  EP +L AR PNVL+NG  GIAVGM+T+IP HNL
Sbjct: 126 APYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV + C+ ++ +P   LD LM+ I+GPDFPT A VI     I   YA G+GS+  R V 
Sbjct: 186 REVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLKQRAV- 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+  GD   IVVT +PYQV+ A +LE+IA+ + +K++  ++DLRDESD +    ++  
Sbjct: 245 -YEREEGD---IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRLVIT 300

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            R    DV  +++ L+  T L+  + V  NM+ ++G +P+  +L  IL  ++ FR   V 
Sbjct: 301 PRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDG-RPQVKSLDMILNEWLQFRMVTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L+K  +R H+L GL  A  N+DEV+ IIR    P+     LM+R          
Sbjct: 360 RRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPV---LMER---------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +S+ Q  AILEL+L  L  L    IR E + L  E +     
Sbjct: 407 ----------------FGVSDRQAEAILELKLRHLAKLEEMKIRGEQDELNEEREYLETT 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S +++  ++ +EL    ++    RR+ +V  E    +++ D +  + + V +S  G+V
Sbjct: 451 LGSMAKMKKLVAKELKDDAEKYGDDRRSPLVEREDAKALDESDLLSADPITVVLSEKGWV 510

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                       R  KG      G+  +  D         ++ SV F  S G  Y     
Sbjct: 511 ------------RAAKGHEVDVEGLSYKAGDKYKACAKGKSNQSVCFIDSTGRTYSLPAH 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   +S   G      +   +D+ ++     + +T  G     + +D
Sbjct: 559 TLP--SARGQGEPLSGRVSPPSGASFMAAV-MGKDKDAY-----LMSTDAGYGFVVRYAD 610

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAI 713
            +   ++GK  + +     +L  +      D  I L +  G+ + FP+S +
Sbjct: 611 LLANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSNEGRLLVFPVSEL 661


>gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
 gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
          Length = 749

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 239/748 (31%), Positives = 392/748 (52%), Gaps = 74/748 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + ++S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K A
Sbjct: 11  VETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKAGSKYKKSA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GK+HPHG++A Y+A+  MAQD+S R  L++GQGN+GS D DP   AA RYTE 
Sbjct: 71  RTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSAD-DPKSFAAMRYTES 129

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + A  LL +LG+ TVD++PN+DG+  EPVVL A+ PNVL+NG  GIAVGMAT++P H
Sbjct: 130 KLARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNGTTGIAVGMATDVPPH 189

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL E+VD  V +++NP   +  L E ++GPD+PT + +I     ++  Y +GRGS+ +R 
Sbjct: 190 NLREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDLQAMYQSGRGSVKMRA 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E  +     IVV  +PYQV+ + +LE+IA  ++ +++  ++DLRDESD +     +
Sbjct: 250 SWSVEDGA-----IVVNALPYQVSGSRVLEQIAAQMQARKLPMVSDLRDESDHEHATRFV 304

Query: 313 ELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
            + R    D+  +++ L+  T L+  + V  N++ ++G +P    L  IL  ++ FR   
Sbjct: 305 IVPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDG-RPAVKALNVILGEWLRFRRTT 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L++   R HVL G  IA  N+DEV+RIIR    P+ A   L+ R        
Sbjct: 364 VQRRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPA---LIAR-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+VQ  AIL+L+L  L  L    IR E + L  E  +  
Sbjct: 413 ------------------FGLSDVQAEAILDLKLRNLAKLEEMKIRGEQDELAAERDKLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
             L S +R+  +IK+EL++V +     RR+ I   E      + +    + + + +S +G
Sbjct: 455 LTLGSDARMKTLIKKELMAVAEVHGDERRSPITQREEARPFSETELASSDPLTIVLSEMG 514

Query: 547 YVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++            R  KG     + +  +  D         ++   + F S G  Y   
Sbjct: 515 WI------------RAAKGHDIDPTSLNYKSGDGFKLAARGKSNLPTVVFDSTGRAYSIA 562

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   ++   G     ++      +  ++   + A+  G     + 
Sbjct: 563 SHALP--SARGQGEPLTGRINPPSGATFEGLL------TGADSDKFLLASDAGYGFVARF 614

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA--- 717
           +D    N++GK  + L     +L        + +L+   T LG+ + FP+S +   A   
Sbjct: 615 ADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGRLLVFPLSDLPEMARGK 674

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
           G   +G+ G   A  ++V+     + +D
Sbjct: 675 GNKIIGIPGPKAAAREEVVVGVCAMRSD 702


>gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
 gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
          Length = 752

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 248/745 (33%), Positives = 393/745 (52%), Gaps = 77/745 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++S+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   K+ K AR 
Sbjct: 13  TLSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKKSART 72

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GK+HPHG++A Y+A+  MAQD+S R  LI+GQGN+GS D DP   AA RYTE RL
Sbjct: 73  VGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSPD-DPKSFAAMRYTESRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL +LG+ TVD++PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 132 TRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNGTTGIAVGMATDIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EVV   + +++ P   L+ L +II+GPDFPT A +I  R+ I   Y TGRGS+ +R   
Sbjct: 192 REVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEISAMYKTGRGSLKMRAAW 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E  +     +VV  +P+QV+ + +LE+IA  ++ +++  +ADLRDESD +     + +
Sbjct: 252 RVEDGA-----VVVHALPHQVSGSKVLEQIAAQMQARKLPMVADLRDESDHEHPTRFVVV 306

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVV 370
            R    D+  +++ L+  T L+  + VN+  + ++G +P   +L  IL  ++ FR   V 
Sbjct: 307 PRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDG-RPGVKSLATILLEWLEFRRTTVR 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L K   R H+L G  +A  N+DEV+RI+R    P  A   LM R          
Sbjct: 366 RRLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPA---LMAR---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AIL+L+L  L  L    IR E N L  E  +    
Sbjct: 413 ----------------FQLTELQADAILDLKLRNLAKLEEMKIRGEQNELAEERDDLQKT 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S +RL  +IK+EL SV ++    RR+ IVE            RE+     S L     
Sbjct: 457 LGSDARLKTLIKKELESVANDHGDDRRSPIVE------------REE-AKAFSELELTTA 503

Query: 551 VPLSVYRAQR---RGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            PL++  +++   R  KG       +  +  D         ++   + F S G  Y    
Sbjct: 504 DPLTIVLSEKGWIRAAKGHDIDPEALSYKSGDGFKLAAKGRSNQPTVVFDSTGRSYSLPS 563

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +LP  S + +G+ L   ++   G     ++      +  +    + A+  G     + +
Sbjct: 564 HQLP--SARGQGEPLTGRINPPSGATFEALL------TGVDADRYLLASDAGYGFVGRFA 615

Query: 664 DFIQINRSGKIAMKLDSRDEIL---SVETCTQENDILLTTKLGQCVRFPISAIRVFA--- 717
           D    N++GK  + L     +L   SV +  +   +   T  G+ + FP++ +   +   
Sbjct: 616 DLQTKNKAGKAVLSLPKGAGVLQPGSVGSADETAMVAAVTNEGRLLVFPLTDLPELSRGK 675

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL 742
           G   +G+     A  ++++  A+VL
Sbjct: 676 GNKIIGIPTPRAAAREELMVGAVVL 700


>gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 754

 Score =  355 bits (910), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 255/789 (32%), Positives = 407/789 (51%), Gaps = 82/789 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++  Y TGRGS+ +
Sbjct: 189 PHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E   GD   IV+  +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRFE--DGD---IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  ++  L+  T L++ + VN+  + L+G KP    L  +L  ++ FR 
Sbjct: 304 IVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDG-KPAVKDLRQLLSEWLQFRI 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+     LM+R      
Sbjct: 363 GTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+ RL +L  L    IR E   L  E K 
Sbjct: 414 --------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKR 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  ++++EL+   +     RR+ IV       + + + +  E + V +S 
Sbjct: 454 LQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     ++  P+D++    L+V+ A+  G     
Sbjct: 562 LPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDDDA----LFVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA- 717
           K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S +     
Sbjct: 614 KGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK 673

Query: 718 --GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G   +G+ G  +A  ++ ++   VL A A           + A +R +S   +++   
Sbjct: 674 GKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLKGDDLEHY 725

Query: 776 KNDSSVEGN 784
           K +    GN
Sbjct: 726 KGERGRRGN 734


>gi|194293807|gb|ACF39998.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 231/305 (75%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL    P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNPPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
 gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
          Length = 772

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 270/796 (33%), Positives = 398/796 (50%), Gaps = 80/796 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D+E ++ +   S     + +YL YAI+V+ GRA+PD+ DG KPV RRIL+ M ++ +
Sbjct: 11  LPPDDEHKESLMLASFA---ERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   K  K A + G+V+GK HPHG+ ++YDAL RMAQD+S+R  LI+G GNFGS DGD  
Sbjct: 68  DSEAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHGNFGSRDGDGA 127

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   A  LL+++ + TV+F+ NYDGS QEP +L AR P  L+NG  GIAVG
Sbjct: 128 AAMRYTEARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTLLNGASGIAVG 187

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATG 244
           MAT IP+HNL EV    VA+I NP I    LMEII GPDFP G  +I     I   Y  G
Sbjct: 188 MATEIPSHNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAPNTISEIYENG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------------- 291
           RGS+ +R    IE+ +  + Q VV+E+P   +   +LE+I E+   K             
Sbjct: 248 RGSVKVRARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRAGKKALSAEQV 307

Query: 292 ----RIVDIAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MV 342
               + + I D +RDE+ R    R+V+E K +  + D  +  L  +TSL+    VN  M+
Sbjct: 308 ALRQQFLGILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLECNAPVNLVMI 367

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            ++G +P +  L  I+  ++ FR   V RRT + L +  DR H+L G    + N+D V+ 
Sbjct: 368 GIDG-RPRQKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETVLLNIDAVIH 426

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           IIR S  P+ A                LID                LSE Q   ILE+RL
Sbjct: 427 IIRESDEPKAA----------------LID-------------AFQLSERQADDILEIRL 457

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            +L  L +  I  EL  L  E K   D+L + S +  +I +E+ + + +    RRT ++E
Sbjct: 458 RQLARLEKIRIEQELAELRKEKKGLHDLLDNPSSMKRLIIREIEADRKKYGDARRT-LIE 516

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG-GKGRSGVVMRDEDFVTDLF 581
                  E  IV E + V +S  G+V+         QR G G   S +  +  D +   F
Sbjct: 517 EAERATAEQKIVDEPVTVIISQNGWVR---------QRTGHGLNLSAITFKSGDNLFSSF 567

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
              +   +L FSS G +Y   V +LP G  +  G  +     +   E I   +    D+S
Sbjct: 568 ECRSTDFLLAFSSTGRIYTIPVHQLPGG--RGDGMPITTFAEIGIDETIVQYLVSSPDKS 625

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTT 700
                 V+ +   G     K SD +   R+GK  + L+  + +L      + +  I + +
Sbjct: 626 ------VLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDGETLLPPLVIPEASKSIGVLS 679

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           + G+ + F  + +RV     S G  G+ L   D+   +   L  D +    IC  K+ + 
Sbjct: 680 EKGRFLLFDATELRVL----SSGGHGVILMGLDKGEKIRATLPVDDNGCLVICMAKNDNR 735

Query: 761 QRRLISGDTEEITSLK 776
               ISG+  E  + K
Sbjct: 736 YEVRISGNQIETYTGK 751


>gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804]
 gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii]
          Length = 771

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 259/735 (35%), Positives = 374/735 (50%), Gaps = 75/735 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 21  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLGPGAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPF 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL EV
Sbjct: 141 SRLLLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIE 257
              CVA+I  P +  + L  ++ GPDF  G  +I     I   YA GRGS+  R     E
Sbjct: 201 AQACVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADIAQIYAGGRGSLKARARWRFE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+VV E+P   +   +LE+I E+   K                  ++++ D +
Sbjct: 261 EMARGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKKSLTTDQQQAKAVMLNLLDAV 320

Query: 300 RDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +    R+V E K      D  +N L   TS++S   VN+V +    +P +  L  
Sbjct: 321 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSVPVNLVCIGTDGRPRQKGLRD 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR + VVRRT++ L+K  DR HVL G  +   N+DEV++ IR S  P+ A   
Sbjct: 381 ILTEWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPKAA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LMQR                            LSE Q   ILE+RL +L  L    I  E
Sbjct: 438 LMQR--------------------------FQLSERQAEDILEMRLRQLARLEGIKIEQE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L     E     ++L + + L  ++ +E+ +   +    RRT ++E       E  +V E
Sbjct: 472 LADKREEQSRLQELLDNPASLKRLLVKEIEADAKQYGDERRT-LIETAERAVLETKVVDE 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G++        RA++  G   +    +  D +   F   T  +++     G
Sbjct: 531 PVTVIVSQKGWL--------RARQGHGHDAAQFGFKQGDDLYGAFECRTTDTLIAVGDNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHG 655
            VY   V  LP  S +  G+ +  ++ L  G RI  +I   P  +S W     + AT+ G
Sbjct: 583 RVYSVAVAGLP--SARGDGQPVTTMIDLAPGTRIVHSIAASP--DSRW-----LLATQRG 633

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
                +L D +   R GK  + L++ D +L  V        + L +  G+ + F +  ++
Sbjct: 634 FGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDGARQLALLSAKGKFLVFGLDEVK 693

Query: 715 VFAGRNSVGVRGISL 729
                 S G RG  L
Sbjct: 694 SL----SAGGRGTIL 704


>gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
          Length = 750

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 241/710 (33%), Positives = 377/710 (53%), Gaps = 70/710 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 8   EGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+VD DP   AA RYT
Sbjct: 68  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   L+ L+ +++GPDFPT A +I  +  I+  Y  GRGSI +
Sbjct: 187 PHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEIRKIYQQGRGSIKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R     +K  G   +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +   R
Sbjct: 247 RAA--WKKEDG---EIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVR 301

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI  +      D ++  L+  T L+  + VNM  +   YKP    L+ IL  ++ FR  
Sbjct: 302 IVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWLTFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R       
Sbjct: 362 TVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEP---KAELMAR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L    ++ E   L  E    
Sbjct: 412 -------------------FNLSDAQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
            +IL S  RL  ++K+E+        +PRR+ +VE      + + + +  E + V +S +
Sbjct: 453 EEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEM 512

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600
           G+V            R  KG      G+  +  D ++   +  S   +V F  S G  Y 
Sbjct: 513 GWV------------RCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQPAV-FIDSTGRSYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   L+L  G  +  ++   ED+       ++ A+  G     
Sbjct: 560 LDPLSLP--SARSQGEPLTGKLTLPAGATVDQLLIENEDQP------LLMASDAGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFP 709
           K +D +  N++GK  + L    ++L   T      +L+  T  G+ + FP
Sbjct: 612 KFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFP 661


>gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 778

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 246/690 (35%), Positives = 365/690 (52%), Gaps = 68/690 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ D  + +YL YA++V+  RA+P++ DG KPV RRIL+ M +MG+  + K VK AR+ 
Sbjct: 18  LTLGDYAERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYAMHEMGLAADAKPVKSARVV 77

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+++ Y+AL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 78  GDVLGKYHPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 137

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF+EP  L  R P VL+NG  GIAVGMAT +P HNL EV
Sbjct: 138 AQLLLDEIDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGASGIAVGMATEVPPHNLREV 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               + +I NP++D  ALME I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 198 AQAAIELIRNPNLDHAALMERIPGPDFPGGGQIISSPAEIAAAYESGRGSLKVRARWKIE 257

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+V+TE+P   +   +LE+I EL   K                  ++ + D +
Sbjct: 258 ELARGQWQLVITELPPGTSSQKVLEEIEELTNPKVKLGKKTLTPEQLQTKQSLLALLDAV 317

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +    R+V+E K         +N L  YTSL+S   +N+V +    +P +  L  
Sbjct: 318 RDESGKDSPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAPINLVMIGADGRPRQKGLGE 377

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ +R   V RRT++ L+K +DR H+L G  I   NLDEV+RIIR S  P+ A   
Sbjct: 378 ILREWIGYRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNLDEVIRIIRESDEPKAA--- 434

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                   I + G   LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 435 -----------------------LIAAFG---LSQRQADDILEIRLRQLARLEKIKIEKE 468

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E      +L S   +  +I +E+ +   +    RRT +++       E  +V E
Sbjct: 469 LGELRDEKARLEQLLGSDVAMKRLIIKEIEADAKQFGDARRT-LIQQDKRATFEARVVDE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        R  +  G   SG   +  D +   F   T  +++ + S G
Sbjct: 528 PVTVVVSQRGWV--------RTLKGHGLDASGFTFKAGDSLYAAFQCRTPDTLIAWGSNG 579

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 580 RVYSVPVAALPGG--RGDGVPVTSLIELEAGTHLMHYFAAPLEQP------LLLASSNGF 631

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
               ++ D I   ++GK  M +D+  + L+
Sbjct: 632 GFIARIGDMISRVKAGKSFMTIDAGAQPLA 661


>gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
 gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
          Length = 753

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 256/777 (32%), Positives = 403/777 (51%), Gaps = 85/777 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VS+    + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K 
Sbjct: 11  GVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELGLKAGAKYKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++++Y+A+  MAQ++S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +LG+ TV ++ N+DG+  EP VL AR PNVL+NG  GIAVGMAT+IP 
Sbjct: 130 SKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ +++ P   +D L E I+GPD+PT A +I     ++N Y TG+GSI +R
Sbjct: 190 HNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYKTGKGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      +VVT +P+QV+ + +LE+IA+ +  K++  +ADLRDESD +    +
Sbjct: 250 AVWQKEGSD-----VVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDESDHENPTRL 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + +    D+  ++N L+  T L+  + V  NM+ ++G  PE  +L  IL  ++ FR +
Sbjct: 305 VIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDG-GPEVKSLDKILTEWLQFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L K  +R   L  L I   N+DEV+RIIR    P+                
Sbjct: 364 TVRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPKPV-------------- 409

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             LI+  D             L E+Q   I+E +L +L  L    IR+E   L  E +  
Sbjct: 410 --LIERFD-------------LVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             IL+S  RL  ++K+ELL V +E    RR+ I          +E+ +  E + V +S  
Sbjct: 455 EQILASARRLKTLVKKELLEVAEEYGDDRRSPIASRGEAKAFTEEELMTTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ SV+   S G  Y  
Sbjct: 515 GWV------------RSAKGHDIDPQSLSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTV 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S + +G+ L   ++   G     +M    D     +LY + A+  G     K
Sbjct: 563 AAHSLP--SARGQGEPLTGRINSPSGASFEGLMMGRAD-----DLY-LLASDAGYGFVVK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS----VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            SD    N++GK A+ L     +L       T T+   +   +  G+ + FP++ +   +
Sbjct: 615 FSDLQTKNKAGKAALSLPKGARVLQPGMVAGTETELRYVAAVSNEGRMLIFPLTELPTMS 674

Query: 718 ---GRNSVGVRGISL-AKGDQVISMAIV-------LHADADY-DERICYMKHMSAQR 762
              G   +G+    L A+ + V+++AI+       +HA   Y + +   + H   +R
Sbjct: 675 RGKGNKIIGIPPSRLQAREEFVVAVAIINERDTLRVHAGKRYVNMKFSELDHYMGER 731


>gi|194293795|gb|ACF39992.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293799|gb|ACF39994.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 232/305 (76%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VI+LKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIDLKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 752

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 174/405 (42%), Positives = 263/405 (64%), Gaps = 4/405 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++ +  IT   + ++    YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +    
Sbjct: 2   KKNKNNITEEQLKNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLTSKS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GK+HPHG+ ++YDAL R+AQD+S +  LI GQGNFG++DGD  AA R
Sbjct: 62  SFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L + + FLL D+G +TV+FR  YDG   EP VL A +PN+L NG  GIAVGMATN
Sbjct: 122 YTETKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSI 248
           IP HNL E+    + + ++ D  +  L++I++GPDFPTG ++ L +  +   Y TGRG  
Sbjct: 182 IPPHNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGRGFF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R    +E  S  + Q+ +++IPYQVNK+ ++EKIA+L+  K+   I ++ DESD +  
Sbjct: 242 ELRAKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESD-ENI 300

Query: 309 RVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           RVVI  K R     V++N LY+ T L+  F +NM  LN   +P+  ++  IL +F+  R 
Sbjct: 301 RVVIRPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKHRY 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            ++ +++K+ LNK   R  +L G  IA  NL+ +++IIR S NP+
Sbjct: 361 IILEKKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNPK 405


>gi|194293813|gb|ACF40001.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 169/305 (55%), Positives = 231/305 (75%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFPKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 747

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 241/707 (34%), Positives = 358/707 (50%), Gaps = 71/707 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLKHLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E ++ 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKEREQI 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           L IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 LSILGSKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  RD D +       +   V F  S G  Y  
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYST 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            V  LP  S +  G+ L    S   G     +       S  NN   V A+ HG     +
Sbjct: 563 LVHTLP--SARGNGEPLTGRFSPASGASFQVLA------SGENNARFVLASSHGYGFVTR 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCV 706
             +    N++GK  + L +   +L+       Q + I+  T  G  +
Sbjct: 615 FENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLL 661


>gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
 gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
          Length = 758

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 241/714 (33%), Positives = 376/714 (52%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT A +I     I   Y TGRGS+  R
Sbjct: 190 HNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYETGRGSLKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSVEAG-----EIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           VV+        D ++  L+  T L+  F VN+  + L+G +P    L  +L  ++ FR +
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDG-RPRVKGLKDLLTEWLEFRVD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AILEL+L  L  L    I+ E + L  E ++ 
Sbjct: 414 -------------------FNLTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  
Sbjct: 455 ELLLGSDRRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQELTPSEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKE 601
           G+V            R  KG             D ++ S    ++ + +F  S G  +  
Sbjct: 515 GWV------------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   EDE  +     + AT  G      
Sbjct: 563 DSHSLP--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQCF-----LLATDAGYGFICT 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
            +D +  N++GK  + L    + L       ++E  IL  T  G+ + F + A+
Sbjct: 615 YNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREMSILAITNEGRMLLFSLEAL 668


>gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 773

 Score =  353 bits (906), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 256/745 (34%), Positives = 389/745 (52%), Gaps = 76/745 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  
Sbjct: 12  SDAPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGP 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA
Sbjct: 69  DAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+A
Sbjct: 129 MRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I  AY +GRG
Sbjct: 189 TEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIAAAYESGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR----------------- 289
           S+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL                   
Sbjct: 249 SLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNT 308

Query: 290 EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           +K ++D+ D +RDES ++   R+V E K R       +N L  YTSL+S  ++N+V +  
Sbjct: 309 KKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGA 368

Query: 347 -YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+D+V+RIIR
Sbjct: 369 DGRPGQKGLLAILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDDVIRIIR 428

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S  P+ A                LI              T  L++ Q   ILE+RL +L
Sbjct: 429 ESDEPKAA----------------LIS-------------TFGLTDRQAEDILEIRLRQL 459

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +    RRT +++   
Sbjct: 460 ARLEKIKIEKELDALRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGDDRRT-LIQQEK 518

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
               E  +V E + V VS  G+V        RA +  G   +    +  D +   F   T
Sbjct: 519 RATFEAKVVDEPVTVVVSQRGWV--------RALKGHGLDPAAFSFKAGDSLYAAFQCRT 570

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              ++ + S G VY   V  LP G  +  G  + +++ L  G  +        D+     
Sbjct: 571 PDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAAADQP---- 624

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQ 704
             ++ A+ +G     K+ D +   ++GK  M +D     L+ +        +   +  G+
Sbjct: 625 --LLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLPNATQVACLSSGGR 682

Query: 705 CVRFPISAIRVFAGRNSVGVRGISL 729
            + F +  ++  +G    G RG++L
Sbjct: 683 LLVFGMDEMKTLSG----GGRGVTL 703


>gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424]
          Length = 780

 Score =  353 bits (906), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 365/711 (51%), Gaps = 76/711 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+   S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K
Sbjct: 9   QPEEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RY
Sbjct: 69  PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LLD++ + TVDF PNYDGS QEP +L AR P VL+NG  GIAVGMAT I
Sbjct: 129 TEARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGASGIAVGMATEI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
           P HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+     I   Y  GRGS+ 
Sbjct: 189 PPHNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQIYENGRGSLK 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------R 292
           +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K                  
Sbjct: 249 VRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTPDQQQLKAT 308

Query: 293 IVDIAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYK 348
           ++ + D +RDES +    R+V E K +       +  L  +TSL+S   +N+V +    +
Sbjct: 309 VLAVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPINLVMIGTDGR 368

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P +  L  IL  ++AFR + V RRT++ L K  DR H+L G  + + N+DEV+RIIR S 
Sbjct: 369 PRQKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESD 428

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P+ A  E                                LS+ Q   ILE+RL +L  L
Sbjct: 429 EPKPALVE-----------------------------AFGLSDRQAEDILEIRLRQLARL 459

Query: 469 GRDDIRNELNSLGIEIKEC-LDILSS-----RSRLLGIIKQELLSVKDELDTPRRTRIVE 522
             + IR E     +  ++  LD+L       R R++  I+ +      E   PRRT I E
Sbjct: 460 --EAIRIEKELKELREEQADLDVLLKSETMMRRRIIKEIETDAKQYSPEDKDPRRTLIQE 517

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  E  ++ E + V +S  G+V        R ++  G        +  D + + F 
Sbjct: 518 E-RRAAAEVRVIDEPVTVVMSQKGWV--------RTRQGHGHDPQQFTFKAGDALYNTFD 568

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F + G VY   V  LP G  +  G  +  ++ L  G ++     F  + S 
Sbjct: 569 CRTVDVLLVFGTNGRVYSVPVSSLPGG--RGDGVPITTLIELQSGSQVAHT--FAGNASQ 624

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
                V+ AT +GN  +  + D     + GK  + LD  D  L+     +E
Sbjct: 625 ----RVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDGDAPLAPAPIGEE 671


>gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15]
          Length = 781

 Score =  353 bits (906), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 260/754 (34%), Positives = 385/754 (51%), Gaps = 80/754 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+
Sbjct: 16  ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVKSARV 75

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 76  VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 135

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++L + TVDF PNYDGS  EP ++ AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 136 ISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGASGIAVGMATEIPSHNLRE 195

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V    VA+I +  +    L + I GPDFP G  I+     I   Y TGRGS+ +R    I
Sbjct: 196 VATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQIYETGRGSLKVRARWKI 255

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E  +  + Q+VVTE+P   +   +LE+I EL   K                  ++ + D 
Sbjct: 256 EDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTMLGLLDA 315

Query: 299 LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTL 354
           +RDES +    R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L
Sbjct: 316 VRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGL 374

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R   V RRT++ L K  DR H+L G  + +  ++EV+RIIR S  P+ A 
Sbjct: 375 REILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPKAA- 433

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+Q ++N                         LS+ Q   ILE+RL +L  L    I 
Sbjct: 434 --LIQ-AFN-------------------------LSDRQAEDILEIRLRQLARLEAIKIE 465

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL +L  E  E   +L S + +   I +E+ +   +    RRT I E       E  +V
Sbjct: 466 QELKNLREEQAELDVLLKSETMMRRRIVKEIETDAKQFGDDRRTLIQEE-RRAAAEVKVV 524

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        R ++  G   +    +  D + D F   T  ++L F +
Sbjct: 525 DEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDALLIFGT 576

Query: 595 -----LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                 G VY   V  LP G  +  G  L  ++ L  G  I   +      +S     V+
Sbjct: 577 RDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTL------ASHAEQNVL 628

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
            +T+ GN    K+ D +   + GK  + LD  D+        ++       +  G+ + F
Sbjct: 629 ISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPEDAYGAACLSANGRLLLF 688

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           P+S ++  A     G RG+ L + ++  ++A  L
Sbjct: 689 PLSEVKTLAS----GGRGVILMELEKNETLAQAL 718


>gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
 gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
          Length = 758

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 249/739 (33%), Positives = 382/739 (51%), Gaps = 81/739 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +  + +   YL YA++ I  RA+PD RDGLKPVHRR+L+ M ++ +  ++ + K A
Sbjct: 12  IIEETFNEALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRELKLNPDQAFKKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++Y+AL R+AQD++ R  L+EGQGNFG++DGD  AA RYTE RL
Sbjct: 72  RVVGDVIGKYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNIDGDGAAAMRYTEARL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            KAA  LL D+ + TVDF   YDGS +EP+VL   +PN+L NG  GIAVGMAT++P HN+
Sbjct: 132 TKAAELLLQDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGSTGIAVGMATSVPPHNV 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+    +A+ID P+ + +AL++ I+GPD PTG  I+     I++AY TGRG   +R   
Sbjct: 192 AEICAAALALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRSAYETGRGGFRVRAKW 251

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E       +IVVTEIPY V K+ ++E+IA+L+  K++  + D+ DES  +  R+V+E 
Sbjct: 252 EKEDIGRGMWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDVLDEST-EDIRLVLEP 310

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           K +    D+++  L++ T L++  S+N+  L+    P    L  +L+ ++  R EV VRR
Sbjct: 311 KSKLVDPDMLMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVLQIWLEHRREVAVRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
               L K  DR  VL G  I  A+LDEV+RIIRF   P+    +LM              
Sbjct: 371 ATTRLAKVEDRLEVLAGYLIVYADLDEVIRIIRFEDEPKA---KLMAH------------ 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q  AIL +RL  L  L   +IR E  +L  E K   +++ 
Sbjct: 416 --------------FELTERQAEAILNMRLRALRKLEELEIRKEDTNLRAERKTLKELIG 461

Query: 493 SRSRLLGIIKQELLSVKD--ELDTP--RRTRIVEGLLDMEDEDCI----VREDMVVTVSH 544
           S +     ++ E+ S+ +     TP  +R  + +   D+  E  I    VRE +   +S 
Sbjct: 462 STALQWDKVRGEVKSLGEIYAETTPLGKRRTVFDKAPDISGEAPIEAFVVREPITAVLSE 521

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVV--MRDEDFVTDLFIVSTHTS--VLFFSSLGFVYK 600
            G+V            R  KG    V  ++ ++     F V   T+  +L F++ G  Y 
Sbjct: 522 RGWV------------RALKGHINDVTELKFKEGDKSAFAVKCETTDRLLMFATDGKFYT 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES-----SWNNLYVVFATKHG 655
            +  +LP G    RG           GE +   +  P+D +      ++    +     G
Sbjct: 570 LEASKLPGG----RG----------HGEPVRLHVDLPDDAAPIGLFKYDPERTLLVASDG 615

Query: 656 NVR-RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           N   R +  D + + + GK  + L   DE       T +  + L  +  + + F +  I 
Sbjct: 616 NSGFRIQEKDCLALKKGGKQILNLAEGDEAFLCIPATGDR-VALIGENKKLLVFELEEIP 674

Query: 715 VFA---GRNSVGVRGISLA 730
           V +   G   +G +G  LA
Sbjct: 675 VMSRGKGVKLLGGKGAKLA 693


>gi|194293789|gb|ACF39989.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 231/305 (75%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+ VDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNPVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 644

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 237/678 (34%), Positives = 365/678 (53%), Gaps = 69/678 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P
Sbjct: 129 EARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++  Y TGRGS+ +
Sbjct: 189 PHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V  +E   GD   IV+  +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +    
Sbjct: 249 RAVYRVE--DGD---IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  ++  L+  T L++ + VN+  + L+G KP+   L  +L  ++ FR 
Sbjct: 304 IVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDG-KPQVKDLRQLLSEWLQFRI 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+     LM+R      
Sbjct: 363 GTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+ RL +L  L    IR E   L  E K 
Sbjct: 414 --------------------FELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKR 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  ++++EL+   +     RR+ IV       + + + +  E + V +S 
Sbjct: 454 LQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELMPTEPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     +G+  +  D         ++   +F  S G  Y 
Sbjct: 514 KGWV------------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYS 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S + +G+ L   L+   G     ++  P+D++    L+V+ A+  G     
Sbjct: 562 LPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDDDA----LFVI-ASDAGYGFVV 613

Query: 661 KLSDFIQINRSGKIAMKL 678
           K  D    N++GK  + L
Sbjct: 614 KGEDLQAKNKAGKALLSL 631


>gi|157644498|gb|ABV58972.1| GyrA [Bacillus subtilis subsp. subtilis]
          Length = 300

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/289 (57%), Positives = 221/289 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M  +G+  +K Y K ARI GEV+GK HP G++A+Y++  RMAQD++   +L++G
Sbjct: 1   RRILYAMNDLGMTSDKPYKKSARIVGEVIGKSHPRGDSAVYESRVRMAQDFNYLYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFG VDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN
Sbjct: 61  HGNFGFVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPN 120

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LME+I GPDFPT   ILG
Sbjct: 121 LLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIPGPDFPTAGQILG 180

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 240

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
             I DLRDESDR G R+VIE++R A+A+VILN LY+ T+      V +V
Sbjct: 241 EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAHSGHSEVTIV 289


>gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
 gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
          Length = 777

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 241/728 (33%), Positives = 375/728 (51%), Gaps = 90/728 (12%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  M ++ ++ Y K AR+ G+V+GK
Sbjct: 36  LSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRAMRLDPSQGYKKSARVVGDVIGK 95

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YDA+ R+AQD+SLR  L++GQGNFG++DGD  AA RYTE RL + A  L+ 
Sbjct: 96  FHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNIDGDNAAAYRYTEARLTRVAVDLMQ 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            L + TVDFRP Y+G  +EP ++   +PN+L NG  GIAVGMATNIP HN  EV+D  + 
Sbjct: 156 GLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGASGIAVGMATNIPPHNAAEVIDAALL 215

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRG----------- 252
           +IDNP   L  L++ ++GPDFPTG ++      I  AY +GRGS  +R            
Sbjct: 216 LIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQAYESGRGSFRVRARFSIGKDADGK 275

Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                IEK SG   Q+V++EIPY V K  ++E++A+L+ ++++  + D+RDES      V
Sbjct: 276 WEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQLIADRKLPILEDVRDESAEDLRIV 335

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVV 369
           ++   R   A+V+ + LYR T L+S F++N+  L+  + P+   L  +L  ++  +  V+
Sbjct: 336 LVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDATRTPKVMGLKQLLTEWLQHQIIVL 395

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET---ARRELMQRSWNASD 426
           VRR ++ + K  DR  ++ G  IA  NLD ++ IIR    P+    A  EL  R      
Sbjct: 396 VRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIRTEDEPKPVMIAEFELTDR------ 449

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                     Q  AIL +RL  L  L   +++ E   L  E +E
Sbjct: 450 --------------------------QAEAILNMRLRSLRKLEEMELKREQTDLTAEREE 483

Query: 487 CLDILSSRSRLLGIIKQELLSVKD--ELDT---PRRTRIVEGLLDMED--EDCIVREDMV 539
              ++ S +R    ++++L  ++    LDT    RRT I E     E   +  I +E + 
Sbjct: 484 LAKLVESPARQRTRLRKDLERLRGVYGLDTSLGARRTTIAEAAPTREIPLDAMIEKEPVT 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE--DFVTD-----LFIVSTHTS--VL 590
           V +S  G++        RAQR       G V  D+  +F        LF     T+  +L
Sbjct: 544 VILSKRGWI--------RAQR-------GHVAPDQWGEFKFKEGDELLFAAHAQTTDKLL 588

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G  +     +LP G  +  G+ L  ++ ++   RI  ++P     S+   L +  
Sbjct: 589 IAASDGRFFTVGADKLPGG--RGFGEPLRLMVDIDPDARIVAMVP----ASAGGRLLLAS 642

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFP 709
            + HG +      D     R G+  + L  R  ++        +D + +     + V FP
Sbjct: 643 TSGHGFIVNT--DDVTAETRKGRNVVNLKPRAALVVARPIAPGDDSVAVVGDNRKLVVFP 700

Query: 710 ISAIRVFA 717
           ++ + V  
Sbjct: 701 LAEVPVMG 708


>gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
          Length = 798

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 255/758 (33%), Positives = 389/758 (51%), Gaps = 93/758 (12%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V +    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N  +VK AR+
Sbjct: 43  TVPLAQYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSARV 102

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GK+HPHG+++ YDA+ R+AQ++SLR  L++GQGNFGS DGD  AA RYTE RL  
Sbjct: 103 VGEVLGKFHPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLTP 162

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL +L   TVD  PNYDG FQEP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 163 IAAVLLSELDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLRE 222

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           +       + NPD   + ++  I GPD P+GA I+     I+  Y TGRGS+ +R    +
Sbjct: 223 IGGAAALCVRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWSV 282

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD- 298
           E+ +  + ++ V E+P+ V+   ++E+I EL   K                  I+ + D 
Sbjct: 283 EELARGQWRVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLDK 342

Query: 299 LRDESDR-QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTL 354
           + DESD+ Q  R+V E K G  S + ++  L  +TSL+   S+NMV   ++G +P++  +
Sbjct: 343 VADESDKDQAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDG-RPKQKAI 401

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             I++ +  FR   V RR  Y L++  DR HVL G      NLDEV+RIIR S +P+ A 
Sbjct: 402 TDIIREWAQFRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVA- 460

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+ R                            LS+ Q   ILE+RL +L  +    I 
Sbjct: 461 --LIAR--------------------------FELSDRQAEDILEIRLRQLARMEGIKIE 492

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L  E  +   +L+S S L   + +E+          RRT I              
Sbjct: 493 RELKGLQEEGADLNKMLASESLLRRRVAREIDEDIKAYGDDRRTLI-------------- 538

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR-------SGVVMRDEDFVTDLFIVSTHT 587
             +    VS    V   P++V  +Q+  G+ R       S V  ++ D +   F   +  
Sbjct: 539 --EQAERVSLTATVVDEPVTVLISQKYWGRTRIGHGLDLSAVAFKEGDSLLAAFECRSTD 596

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             +  SS G V    V  LP G  +  G  L  ++ L  G +I  +     ++    N+ 
Sbjct: 597 QCIVISSNGRVCSIPVSVLPGG--RGDGVPLTTLVELAAGAKIVRVFCGAAEQ----NVL 650

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQC 705
           +  +  +G V   +LSD I  N++GK  + ++  + IL   + T +++  ++  ++ G+ 
Sbjct: 651 LATSASYGFV--CQLSDMIGRNKAGKQFITIEGDELILPPVLYTPSEQAQVISVSRSGRL 708

Query: 706 VRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAI 740
           + F +  ++    R S G RG+    L +GD + S+ +
Sbjct: 709 LSFALPEMK----RLSSGGRGLIVMGLEEGDVLASLMV 742


>gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 755

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 243/726 (33%), Positives = 387/726 (53%), Gaps = 66/726 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  CV ++DNP  DL  LME + GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQTGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYTVENG-----EIVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDESDHESPVRM 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           I + R      D ++  L+  T LQ  + VN+  + LNG +P+   L+ +L  ++ FR  
Sbjct: 305 IIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNG-RPQVKGLLELLTEWLTFRMT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIR++ +P+    EL+ R       
Sbjct: 364 TVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDPKA---ELISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL+L+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FALSDKQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  R+  +IK+EL+   ++    RR+ +VE      +  ++ +  E + V +S  
Sbjct: 455 QLLLSSERRMKTLIKKELIKDGEDYGDERRSPLVERTESKALTQQELVAVESVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+     G+S      + F+      S   SV F  + G  +      
Sbjct: 515 GWVR-------CAKGHEVDGQSLSYKAGDSFLRSAQGRSNQPSV-FIDTSGRAFATDTHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +    +L  G  +  ++   +DE  +    +     +G +  NK  D 
Sbjct: 567 LP--SARSQGEPITTRFNLAPGTTMEHLL-LSDDEQCY---LLASDAGYGFICANK--DM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA---GRN 720
           +  N++GK  + L +  ++L  +    ++   IL  T  G+ + F + A+   +   G  
Sbjct: 619 VSRNKAGKALLSLPANAKVLLPQKVDKSKPQSILAITNEGRMLLFSLDALPQLSKGKGNK 678

Query: 721 SVGVRG 726
            +G+ G
Sbjct: 679 IIGIPG 684


>gi|194293769|gb|ACF39979.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/305 (55%), Positives = 230/305 (75%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL    P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNHPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINLQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRRSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris]
          Length = 747

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 240/707 (33%), Positives = 358/707 (50%), Gaps = 71/707 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M ++G+    K  K 
Sbjct: 11  GFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  ARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++  Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADLRAIYETGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRV 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R     A+ ++  L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR +
Sbjct: 305 VLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDG-RPQVKNLKHLLSEWLTFRSD 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+     L+ R       
Sbjct: 364 TVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV---LIAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILE +L +L  L    IR E  +L  E  + 
Sbjct: 414 -------------------FALSEEQAEYILETKLRQLARLEEMKIRGEQEALAKERAQL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDE-DCIVREDMVVTVSHL 545
           + IL S+++L  +IK EL +   +    RR+ +V+ G     DE + +  E M V +S  
Sbjct: 455 MAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMVASEPMTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG     +G+  RD D +       +   V F  S G  Y  
Sbjct: 515 GWV------------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFLDSDGRAYST 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            V  LP  S +  G+ L    S   G     +       S  NN   V A+ HG     +
Sbjct: 563 LVHTLP--SARGNGEPLTGRFSPASGASFQVLA------SGENNARFVLASSHGYGFVTR 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCV 706
             +    N++GK  + L +   +L+       Q + I+  T  G  +
Sbjct: 615 FENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLL 661


>gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
 gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
          Length = 747

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 239/717 (33%), Positives = 379/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1]
 gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1]
          Length = 774

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 262/744 (35%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 29  ESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVVGDVLGKY 88

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 89  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQLLLDE 148

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL E+    VA+
Sbjct: 149 IDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREIAAAAVAL 208

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP +    LM+I+ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 209 IRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQW 268

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL                   +K ++D+ D +RDES + 
Sbjct: 269 QLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLDLLDAVRDESGKD 328

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+V E K R       +  L  +TSL+S   +N+V + N  +P +  L  IL  +V 
Sbjct: 329 APVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGTILGEWVR 388

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   LM     
Sbjct: 389 FRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA---LMS---- 441

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 442 ----------------------AFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 479

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+     +    RRT +++       E  +V E + V VS
Sbjct: 480 KAKLEELLANESAMKRLMIKEIEGDAKQYGDDRRT-LIQQEKRATFEAKVVDEPVTVVVS 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T   ++ + S G V+   V
Sbjct: 539 QKGWV--------RALKGHGLDPASFTFKAGDGLYAAFQCRTPDVLIAWGSKGRVHSVPV 590

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G    RG   + + SL + E  T +M +    +      ++ A+ +G     KL 
Sbjct: 591 QVLPGG----RGDG-VPVTSLIELESGTHLMHYFAANAEQQ---LLLASSNGFGFIAKLG 642

Query: 664 DFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D   E L+ +        +   +  G+ + F +  ++      S 
Sbjct: 643 DMVSRVKAGKAFMTIDEGAEPLAPMPVMPLATQVACLSGQGRLLVFGLDEMKTL----SA 698

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           G RG+ L   +   ++A  L  D 
Sbjct: 699 GGRGVILMALEDKETLAQALAIDG 722


>gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 745

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 387/734 (52%), Gaps = 84/734 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 19  EKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAKFKKSARAVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD++ N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 RELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNIKEIAYALI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +ID P I L  LM  ++GPDFPT A +I  R  I+  Y TGRGSI +R V   E+ +  
Sbjct: 198 QLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIEQIYRTGRGSIRMRAVWKKEEGNA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR--GASA 320
               V+T +P+QV+ A +LE+IA+ +R K++  + DLRDESD +    +I + R  G   
Sbjct: 257 ----VITALPHQVSGAKILEQIAQQMRAKKLPMLEDLRDESDHEHPTRLIIMPRHHGVHL 312

Query: 321 DVILNQLYRYTSLQSL--FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + ++N L+  T L+     ++NM+ L+  +P    L+ IL  ++ FR   + RR  + L+
Sbjct: 313 EAVMNHLFATTDLEKSVRINMNMIGLD-QRPLVKGLVSILTEWLTFRRATLRRRLLFNLD 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R HVL GL +A  N+DEV+ IIR                      +D     +  S
Sbjct: 372 KILKRLHVLKGLLVAFLNIDEVIHIIR---------------------TED-----EQKS 405

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + I   G   LS +Q  AILEL+L  L  L   +IR E ++L  E      +L+S  +L 
Sbjct: 406 FLISRFG---LSLIQADAILELKLRHLAKLEEINIRAEQDALEKESGTLQSLLASEKKLN 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +IK+++          RR+ +V+     E  + + +  E + V +S +G+         
Sbjct: 463 NLIKKDIQDDACLYGQNRRSPLVQRTASKESNENEVLPSEPVTVILSKMGWA-------- 514

Query: 557 RAQRRGGKGRS----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  KG      G+  +  D    +    +H S +   S G  Y     +LP    Q
Sbjct: 515 ----RCAKGHEIDPVGLNYKKSDAFYAMARGKSHQSFVLLDSTGRTYALDPMKLPHARHQ 570

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ ++  L+  QG  +  +M   E E S+     + A+  G       +D +  NR G
Sbjct: 571 --GEPVMGKLTPPQGAVVKALM-MAEPEQSY-----LMASDAGYGFICTFADMVAKNRGG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           KI M L    +IL     T  N  LL+ T LG+ + F ++ +             +S  K
Sbjct: 623 KILMTLPEGAQILPPLLITHANHYLLSITALGRMLIFSMADLPT-----------LSKGK 671

Query: 732 GDQVISMAIVLHAD 745
           G+++IS   +L AD
Sbjct: 672 GNKIIS---ILSAD 682


>gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 785

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 243/681 (35%), Positives = 358/681 (52%), Gaps = 82/681 (12%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KK 70
           ++ + D  Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ +         K
Sbjct: 19  TLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMGRMGLGYGGAAGNTAAK 78

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  LI+GQGNFGS DGD  AA RY
Sbjct: 79  PVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDSAAAMRY 138

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD++ + TVDF PNYDGS +EP  L AR P  L+NG  GIAVG+AT I
Sbjct: 139 TEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEI 198

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
           P+HNLGE+   C+A+I  P +  + L+ ++ GPD+P G  I+     I  AY TGRGS+ 
Sbjct: 199 PSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQIISSAAEIAGAYQTGRGSLK 258

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------R 292
           +R    IE+ +  + Q+VV E+P  V+   +LE+I EL   K                  
Sbjct: 259 LRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNPKIKVGKKALSQEQTQLKAS 318

Query: 293 IVDIADL-RDESDRQG-YRVVIELKRGASADV-ILNQLYRYTSLQSLFSVN--MVALNGY 347
           ++ + DL RDES +    R+V E K G +    ++  L  +TSL++   +N  +V L+G 
Sbjct: 319 LLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAHTSLETSAPINLTLVGLDG- 377

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P + +L  +L+ ++AFR+  + RR+++ LNK  +R H+L G  I + +LDEV+ IIR +
Sbjct: 378 RPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEGRQIVLLHLDEVIAIIRQA 437

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P+ A   LM R W+                         LS+ Q   ILE+RL +L  
Sbjct: 438 DEPKAA---LMAR-WS-------------------------LSDRQAEDILEIRLRQLAR 468

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L    I  EL  L     +  DIL+    L   + +E+ +       PRRT     L+  
Sbjct: 469 LEALRIGQELKELRDRQGKLEDILNHPGALRRTLIKEIETDAKTFADPRRT-----LIQA 523

Query: 528 EDEDCI-VR---EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           E +  I VR   E + V VS  G+V        R +   G   +    +  D +   F  
Sbjct: 524 EKKAVIEVRVPDEPVTVVVSQKGWV--------RVRSGHGHEAASFAFKAGDGLYGTFEC 575

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES-- 641
            T  ++L F + G VY   V  LP    +  G+ +  ++ L  G ++      P   +  
Sbjct: 576 RTVDTLLAFGNNGRVYSVAVSLLP--GARGDGQPVTTLIELEAGTQVLHYFAGPAQATLL 633

Query: 642 -SWNNLYVVFATKHGNVRRNK 661
            S +  Y   AT    + R K
Sbjct: 634 LSNSGGYGFLATVEHMISRQK 654


>gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
 gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
          Length = 902

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 255/758 (33%), Positives = 383/758 (50%), Gaps = 78/758 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE G  ++++      +YL YA++V+  RA+P++ DG KPV RRIL  M +MG+++  + 
Sbjct: 103 EEDG--ALTLARYASQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDMYRMGLKFEGRS 160

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L+  +GNFGS DGD  AA RYT
Sbjct: 161 VKSARIVGDVLGKYHPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSRDGDSAAAMRYT 220

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL+++   +VDF+PNYDG+FQEPV L A+ P VL+NG  GIAVGMAT IP
Sbjct: 221 ETRLTPISQLLLEEVDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSSGIAVGMATEIP 280

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNLGEV   CV +++NPD DL+ ++E++  PDFP G  +I  +  I+  Y +GRG + +
Sbjct: 281 PHNLGEVAAACVRLLENPDADLNEILELMPAPDFPCGGQIITPKDEIRAIYRSGRGKLRV 340

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD--------------- 295
           R   H E  +  + Q+V+ E+P   +  ++L++I ++   +   D               
Sbjct: 341 RARWHFEDLARGQWQLVIDELPPAASARSILDRIEQISNPRPKKDKKTLSAKQQQAKSAM 400

Query: 296 ---IADLRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYK 348
              + ++RDES +    R+V E K      D  +N L   T L+S   VN  M+ L+G K
Sbjct: 401 LSLLDNVRDESGKSVDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPVNLVMLGLDG-K 459

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P +  L+ IL+ ++AFR  VV RR++  L K  DR HVL G ++ + N+D V+ IIR   
Sbjct: 460 PRQKGLLEILQDWIAFRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNIDRVIAIIR--- 516

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
                         NA D K   DLI +            L++ Q   ILE+RL +L  L
Sbjct: 517 --------------NADDPK--ADLIKE----------FGLTDRQADDILEIRLKQLARL 550

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               I  EL  L  E      IL S   L     +E+ +       PRRT +VE      
Sbjct: 551 AAIAIEKELAQLAKERAGLEKILGSDGALKRQTAKEIEAAAKSFADPRRT-VVEEAEQAA 609

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E     E + V +S  G++        RA+   G   S +  +  D +       + + 
Sbjct: 610 HEVQTADEPVTVVISRKGFL--------RARTGHGHDCSLMSFKTGDGLEATIECRSSSQ 661

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           + F    G VY   V  LP G  +  G  L   + L +G +    +      S+  N   
Sbjct: 662 ISFLDQAGRVYTLAVSALPGG--RGDGSPLSAFVDLPKGAQPAGWI------SADPNAAA 713

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-----LSVETCTQENDILLTTKLG 703
           V  T  G     K SD     ++G+  + L   + +     L ++    E  I   +   
Sbjct: 714 VIVTSGGKGMVLKASDVSTRLKAGRDFVTLGEGESLLPPIELPLKAAQGEQLIACLSSSN 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + + FP+  +RV A     G+  ++L  G+ ++S+A+V
Sbjct: 774 RLLVFPLKEVRVTAS-GGKGMSFMTLETGESLVSVALV 810


>gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810]
          Length = 747

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 380/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D +  E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMMPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 764

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 238/673 (35%), Positives = 357/673 (53%), Gaps = 69/673 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N KY K
Sbjct: 10  QGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELGLSANAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++D P  +L+ L+E++  PD+PT A +I  +  I   Y TGRGSI +
Sbjct: 189 PHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADIHKIYKTGRGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E   GD   IV+T +P+Q +   +LE+IA  +  K++  IADLRDESD +    
Sbjct: 249 RAVYTEE--HGD---IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDESDHENPTR 303

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R     A+ ++  L+  T L+  + V  NM+ L+G +P+   L  IL  ++ FR 
Sbjct: 304 IVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDG-RPQVKDLRCILSEWLTFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+     LM+R      
Sbjct: 363 ETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPV---LMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                DL D                 Q  AILEL+L  L  L    IR E + L  E  +
Sbjct: 414 ----FDLTD----------------TQAEAILELKLRHLAKLEEFKIRGEQDELAKERDK 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL S  R+  ++K+E+    +     RR+ ++E      + ++D I  E + V +S 
Sbjct: 454 LAQILGSERRMSTLLKKEIQEAAEMYGDDRRSPVIERSEAKALNEKDLIPSESVTVVLSD 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+             R GKG      G+  R  D         ++   +F  S G  + 
Sbjct: 514 KGWA------------RVGKGHDLDVQGLNYRSGDGFRASARGKSNQPAVFLDSAGRAFA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ +    +L  G     ++   EDE       ++ A+  G     
Sbjct: 562 TDAHSLP--SARSQGEPMTGRFNLTPGANFEHVV-MSEDEQ-----VLLMASDAGYGFIT 613

Query: 661 KLSDFIQINRSGK 673
              D +  N++GK
Sbjct: 614 DFKDLVSKNKNGK 626


>gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 465

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/441 (43%), Positives = 285/441 (64%), Gaps = 30/441 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 12  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 72  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 312 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 370

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 371 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREE 430

Query: 408 PNPETARRELMQRSWNASDIK 428
             P   ++ELM R++  +D++
Sbjct: 431 DEP---KQELM-RAFELTDVQ 447


>gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC]
 gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601]
 gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC]
 gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601]
          Length = 780

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 347/639 (54%), Gaps = 68/639 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVKCARISGEV 81
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++     K VK AR+ G+V
Sbjct: 25  QRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLSYSGNAPAKPVKSARVVGDV 84

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G++HPHG+ + YDAL R+AQD+S R  LI+GQGNFGS DGD  AA RYTE RL K A  
Sbjct: 85  LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTKIAGL 144

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL ++ + TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV D 
Sbjct: 145 LLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 204

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTS 260
           CVA++ NP +  + L  ++ GPD+P G  I+     I++AY  GRGS+ +R    IE  +
Sbjct: 205 CVALVKNPRLSDEELFALVPGPDYPGGGQIISSVADIQDAYRGGRGSLKVRARWKIEDLA 264

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-LRDE 302
             + Q+VVTE+P  V+   +LE+I ++   K                  ++ + D +RDE
Sbjct: 265 RGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAGKKALTQEQQQLKASMLAVLDGVRDE 324

Query: 303 SDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGIL 358
           S +    R+V E K G      ++  L  +TSL++   +N  MV L+G +P + +L  +L
Sbjct: 325 SSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLETSAPINLTMVGLDG-RPVQKSLRQML 383

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             +V FR++ + RR+++ L K  DR H+L G  + + N+DEV+ IIR + +P+ A   LM
Sbjct: 384 AEWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVLLNIDEVIAIIRAADDPKAA---LM 440

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            LSE Q   ILE+RL +L  L    I  EL+
Sbjct: 441 AR--------------------------FSLSERQAEDILEIRLRQLARLEAIKIEQELS 474

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E  +  DIL++ + L  ++ +E+ +   +    RRT +++    +  E  +V E  
Sbjct: 475 ELRKEQGQLEDILANPASLRRLMVREIEADAKQFADARRT-LIQEEKKVVAEVKVVDEPT 533

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V VS  G+V        R ++  G        +  D +   F   T   ++ F S G +
Sbjct: 534 TVVVSQKGWV--------RTRQGHGHAADSFAFKAGDGLYGTFECRTVDQLIVFGSNGRL 585

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           Y   V +LP G  +  G+ +  ++ L  G +I      P
Sbjct: 586 YSVPVAQLPGG--RGDGQPVTTLIELEPGTQIAHYFAGP 622


>gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 470

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/441 (43%), Positives = 285/441 (64%), Gaps = 30/441 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M  + +  ++ Y 
Sbjct: 17  EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RYTE
Sbjct: 77  KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  GIAVGMATNIP 
Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-------EI---------------IRGPDFPTGAV 230
           HN+ E+    + +I++PD  ++ L+       EI               +RGPDFPTG +
Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256

Query: 231 ILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K+ ++EKIAEL+ 
Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGY 347
            K++  + D+RDES  +  R+V+E K R    ++++  L++ T L+S  S+NM  L +G 
Sbjct: 317 AKKLPLLDDIRDES-AEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGK 375

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLDEV+RIIR  
Sbjct: 376 VPNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREE 435

Query: 408 PNPETARRELMQRSWNASDIK 428
             P   ++ELM R++  +D++
Sbjct: 436 DEP---KQELM-RAFELTDVQ 452


>gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
 gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
          Length = 747

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 239/717 (33%), Positives = 378/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
          Length = 747

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 388/738 (52%), Gaps = 79/738 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDNYRAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V     
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV----- 666

Query: 721 SVGVRGISLAKGDQVISM 738
                 +S  KG+++I++
Sbjct: 667 ------LSKGKGNKMITI 678


>gi|227518803|ref|ZP_03948852.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
 gi|227073716|gb|EEI11679.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
          Length = 334

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 163/330 (49%), Positives = 237/330 (71%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVN 340
           V+ELK+  +A+ ILN L++ T LQ  ++ N
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFN 334


>gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
 gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
          Length = 773

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 254/734 (34%), Positives = 380/734 (51%), Gaps = 73/734 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRI F M +MG+  N K VK AR+ 
Sbjct: 20  LTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFAMNEMGLSDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDGSF EP VL AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLAEIDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM+ + GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 ASAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
             +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 260 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTLLGLVDAV 319

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +    R+V E K         +N L  +TSL+S   +NMV + G  +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNMVMVGGDGRPRQKGLSE 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 380 ILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                              L++ Q   ILE+RL +L  L +  I  E
Sbjct: 437 LM--------------------------AAFGLTDRQAEDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S   +   + +E+ +   +    RRT +++       E  +V E
Sbjct: 471 LAELREEKAKLEELLGSEPAMKRQLIKEIEADAKQYGDERRT-LIQQEKRATFEARVVDE 529

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 530 PVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLIAWGSNG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V +LP G  +  G  + +++ L  G  +        D++      ++ A+ +G 
Sbjct: 582 RVYSVAVAQLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAAQVACLSSGGRLLVFGLDEMKT 693

Query: 716 FAGRNSVGVRGISL 729
            +G    G RG++L
Sbjct: 694 LSG----GGRGVTL 703


>gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
 gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
          Length = 785

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 244/689 (35%), Positives = 364/689 (52%), Gaps = 77/689 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DG+KPV RRILF M +MG+ +         K VK AR+ 
Sbjct: 27  QRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL R+AQD+S R  LI+GQGNFGS DGD  AA RYTE RL + 
Sbjct: 87  GDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+HNL E+
Sbjct: 147 ASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREI 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D CVA++ NP +  + L  ++ GPD+P G  I+   G I++AY TGRGS+ +R    IE
Sbjct: 207 ADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIE 266

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
             +  + Q+VVTE+P  V+   +LE+I EL   K                  ++ + D +
Sbjct: 267 DLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDVV 326

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLI 355
           RDES +    R+V E K G      ++  L  +TSL++   +N  MV L+G KP + +L 
Sbjct: 327 RDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMVGLDG-KPVQKSLR 385

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++AFR++ + RR+++ L K  DR H+L G    + N+DEV+ IIR S  P+ A  
Sbjct: 386 RMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRASDEPKAA-- 443

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++R                            LS+ Q   ILE+RL +L  L    I  
Sbjct: 444 -LIER--------------------------FRLSDRQAEDILEIRLRQLARLEAIKIEQ 476

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  DIL++ + L  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 477 ELKELREEQGKLEDILANPASLRRLMVKEIEADAKQFADARRT-LIQADKRATAEVKVVD 535

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA++  G        +  D +   F   T  +++ F S 
Sbjct: 536 EPVTVVVSQKGWV--------RARQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSN 587

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V +LP    +  G+ +  ++ L  G +       P       N  ++ A   G
Sbjct: 588 GRVYSVAVSQLP--GARGDGQPITTLIDLEAGTQPVHYFAGPA------NAALLLAGSGG 639

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                 +      NR GK  + L   +++
Sbjct: 640 YGFIAAVEHMTARNRGGKAFVSLGEGEQL 668


>gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath]
 gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str.
           Bath]
          Length = 744

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 254/722 (35%), Positives = 378/722 (52%), Gaps = 78/722 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D  + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++G+    K  K AR  
Sbjct: 10  IPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSKPKKSARTV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA RYTE RL 
Sbjct: 70  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPD-DPKSFAAMRYTEARLT 128

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL +L   TVD+ PN+DG+ +EP +L AR PN+L+NG  GIAVGMAT+IP HNL 
Sbjct: 129 PYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMATDIPPHNLR 188

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EVV+ C+ +ID P+  ++ L   IRGPDFP  A +I  R  +   Y TG G++ +R    
Sbjct: 189 EVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGAVRLRARYE 248

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIEL 314
           +E  +     IVVT +PYQV+ A ++E+IA  ++ K++  + DLRDESD +   R+VI  
Sbjct: 249 LEDGN-----IVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHENPTRLVIMP 303

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVR 371
           K R    + +++ L+  T L+  + VN+  + LNG +P+   L  IL  +++FR E V R
Sbjct: 304 KSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNG-RPQVKNLREILTEWLSFRTETVRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L+K   R H+L GL +A  ++DEV+ IIR    P+     LM R           
Sbjct: 363 RLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPKPV---LMTR----------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+++Q  AILELRL  L  L    IR E  +L  E       L
Sbjct: 409 ---------------FGLTDLQAEAILELRLRHLARLEEIKIRGEQEALEQERARLERTL 453

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            SR+ L  +IKQEL    ++    RR+ IV  +    ++    I  E + V +S  G+++
Sbjct: 454 GSRAELDALIKQELRQDAEKFGDARRSPIVARQASQALDTTALIASEPVTVVLSEKGWIR 513

Query: 550 RV------PLSV-YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
                   P ++ YRA    G G          F+      ST  +  F  S G  Y   
Sbjct: 514 SAKGHEVDPATLSYRA----GDG----------FLCAALGRSTQPAY-FLDSTGRSYSLA 558

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP  S + +G+ L   L+   G     ++   E++      + + AT  G     +L
Sbjct: 559 VHDLP--SARGQGEPLTGRLNPPPGAIFVAVLAGSEED------WYLLATDGGYGFLVQL 610

Query: 663 SDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDIL-LTTKLGQCVRFPISAI-RVFAGR 719
            +    NRSGK  + +    +++  +     + D L   +  G+ + +P   I R+  G+
Sbjct: 611 GELGSKNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGRLLVYPAEEIPRLNKGK 670

Query: 720 NS 721
            S
Sbjct: 671 GS 672


>gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A]
          Length = 739

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 236/699 (33%), Positives = 368/699 (52%), Gaps = 61/699 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+    + +YL YA+ VIL RA+P L DGLKPV RR+++ M ++G+    KY K AR  G
Sbjct: 8   SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ++S R  LI+GQGN+GS D DP   AA RYTE +L  
Sbjct: 68  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSAD-DPKSFAAMRYTESKLTA 126

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL +L  +TVD+  N+DG+ QEP  L AR PN+L+NGG GIAVGM+T+IP HN+GE
Sbjct: 127 YAHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGE 186

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHI 256
           +V  C A++ NP +  +AL++I+  PDFPTG V++  R  I + Y TG GS+ +R   HI
Sbjct: 187 IVAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHI 246

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           EK     + IV+ E+PYQV+ + + E+I + ++EK+++ +  +RDESD +    ++ L R
Sbjct: 247 EK-----DNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPR 301

Query: 317 GASADV--ILNQLYRYTSLQSL--FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               D   ++  L+  T L+      +NM+ L+G KP+   LI IL+ ++ +RE+ V+RR
Sbjct: 302 SHRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDG-KPQIKPLIVILREWLTYREQTVMRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             Y L+   +R  +L GL IA   LD V++IIR   + +TA   LMQ             
Sbjct: 361 LSYRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTA---LMQ------------- 404

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         + L+  Q+ AIL +RL +L  L  + I  E  +L  E K   +++ 
Sbjct: 405 -------------ALPLTAAQSEAILNIRLRQLAKLEENAIVQEEKTLIDEQKSLQNLID 451

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +R   L  I  EL +       PRRT  +  +    +        E + + +S + +V+ 
Sbjct: 452 NRDARLQFIADELAADAQNYADPRRTTFIKPDAKTALPARAWQPSEAVTLVLSKMAWVR- 510

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                  A+     GR+      ++F+  +   S  T++L  +  G  Y   +    I S
Sbjct: 511 ------LAKTHQVDGRTLAYKSGDEFLLQIAAKSDQTAILCGND-GRYYALSLAN--IAS 561

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L    S    E+ T +     D       Y V A  +      K SD +   +
Sbjct: 562 ARGYGEPLSRYFSF--AEKTTIVAAAALDPEQ----YYVLAANNAYGFVVKGSDLVAKTK 615

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            GK  + +   + +  +    +E+ +      G+ + FP
Sbjct: 616 KGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFP 654


>gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
 gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
          Length = 739

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 248/732 (33%), Positives = 384/732 (52%), Gaps = 65/732 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP+   + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                D+ +IV+TE+PYQV+ + ++ +IA+ +  K++  ++D+RDESD Q   R+VI L+
Sbjct: 252 -----DKNEIVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQNPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRVDAETVMSHLFATTDLESSYRVNLNMIGADG-RPQVKSIRRILLEWIEIRKQTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LNK   R H+L GL IA  ++D V+RIIR    P+     LMQ             
Sbjct: 366 LQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV---LMQHFG---------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            IDD               +Q  AILEL+L  L  L   +IR E   L  +     + L+
Sbjct: 413 -IDD---------------IQAEAILELKLRHLAKLEEMEIRREQEELEAKAAIIREQLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  G+V  
Sbjct: 457 NPESLKNLIINELKEDAKKFGDDRRSPIVTRADAVQIKEQDLMPAETVTVVLSEAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA + G    + +  R  D      +  T+  V F    G  Y      LPI S
Sbjct: 515 ------RAAKGGDVDAANLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----LPISS 563

Query: 611 -PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            P ARG        L     ++ I  F ED++S   L  V +  +G   + + +      
Sbjct: 564 LPSARGLGEPLSSKLAPASGVSFIQVFIEDDAS--ELLAVSSNGYGF--KTQAAQLDTNA 619

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++GK  + +  +   L +    Q   + + +  G+ +   ++ + V       G + I L
Sbjct: 620 KAGKSFLTVADKATALPLLPIQQATHVAILSSAGRLLIVDLTELPVL--NKGKGNKLIQL 677

Query: 730 AKGDQVISMAIV 741
            + +Q++SM  +
Sbjct: 678 DEKEQILSMTTL 689


>gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031]
 gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031]
          Length = 744

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 240/718 (33%), Positives = 379/718 (52%), Gaps = 73/718 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM---VVTVSH 544
             IL S  RL  +IK+E+     +  +PR +++VE     E+   I   DM    V +S 
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVE----REEAKMISESDMTPVTVILSE 507

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +G+V            R  KG       +  +  D         ++ +V+F  S G  Y 
Sbjct: 508 MGWV------------RCAKGHDIDPKSLSYKAGDNYLAHACGKSNQAVVFIDSTGRSYA 555

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     
Sbjct: 556 LDPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFIC 607

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
           K  D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 608 KFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 665


>gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345]
 gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345]
          Length = 755

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 241/727 (33%), Positives = 392/727 (53%), Gaps = 68/727 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CV ++DNP  DL  LME + GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQTGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E       ++V+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYTVENG-----EVVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDESDHESPVRM 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    D   ++  L+  T LQ  + VN+  + LNG +P+   L+ +L  ++ FR  
Sbjct: 305 VIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNG-RPQVKGLLELLTEWLTFRMT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L  L IA  N+DEV+ IIR++ +P+    EL+ R       
Sbjct: 364 TVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDPKA---ELISR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL+L+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FNLSDKQADAILDLKLRHLAKLEEFKIKAEQSELEAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +LSS  R+  +IK+EL+   ++    RR+ +VE      + +++ +  E + V +S  
Sbjct: 455 QLLLSSERRMKTLIKKELIKDSEDYGDERRSPLVERTESRALTEQELVPVESVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A+     G+S      + F+      S   SV F  + G  +  +   
Sbjct: 515 GWVR-------CAKGHEVDGKSLSYKAGDGFLRSAQGRSNQPSV-FIDTSGRAFATETHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSD 664
           LP  S +++G+ +    +L  G  +  ++   E++      Y++ +   +G +  NK  D
Sbjct: 567 LP--SARSQGEPITTRFNLASGATMEHLLLSDEEQC-----YLLASDAGYGFICANK--D 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA---GR 719
            +  N++GK  + L +  ++L  +    ++   IL  T  G+ + F + A+   +   G 
Sbjct: 618 MVSRNKAGKALLSLPANAKVLFPQRVDKSKAQSILAITNEGRMLLFSLDALPQLSKGKGN 677

Query: 720 NSVGVRG 726
             +G+ G
Sbjct: 678 KIIGIPG 684


>gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 750

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 266/801 (33%), Positives = 406/801 (50%), Gaps = 127/801 (15%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +E GI  VS+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   
Sbjct: 6   EIDEDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKATA 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ++S R  L++GQGN+GS D DP   AA
Sbjct: 66  KFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSPD-DPKSFAA 124

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL A+ PNVL+NG  GIAVGMA
Sbjct: 125 MRYTESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNGTTGIAVGMA 184

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T++P HNL EVV   + ++++P   +  L E ++ PDFPT A +I  R  I   Y TGRG
Sbjct: 185 TDVPPHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDIMAMYETGRG 244

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           ++ +R V   EK   D   IVV+ +P+QV+ + +LE+IA  ++ K++  +ADLRDESD +
Sbjct: 245 ALKMRAV--WEKEGPD---IVVSALPHQVSGSKVLEQIAHQMQAKKLPMVADLRDESDHE 299

Query: 307 GYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFV 362
               ++ + R    +V  ++N L+  T L+  + V  NM+ ++G +P    L  ILK ++
Sbjct: 300 NPTRLVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDG-RPGVKGLDRILKEWL 358

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V RR +Y L +   R H+L G  +A  N+DEV+ IIR    P+ A   LM+R  
Sbjct: 359 KFRTETVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPA---LMKR-- 413

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +S+VQ  AIL+L+L  L  L    IR E + L +
Sbjct: 414 ------------------------FGISDVQAEAILDLKLRNLAKLEEMKIRGEQDELEV 449

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDE-DCIVREDMVV 540
           E  +   IL S +RL  +IK+EL SV ++    RR+ ++  G      E D +  + + V
Sbjct: 450 ERDQLQTILGSAARLKTLIKKELQSVAEKFGDDRRSPLMARGEAQAFSELDLMTADPITV 509

Query: 541 TVSHLGYVKRV------PLSV-YRAQ---RRGGKGRS----------------------- 567
            +S  G+++        P S+ Y++    +   KGRS                       
Sbjct: 510 VMSEKGWIRAAKGHDIDPSSLSYKSGDGFKMAAKGRSNQPTVILDSTGRAYTVPSHNLPS 569

Query: 568 ---------------------GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                                G++M DE    DL+++++       +  GFV K      
Sbjct: 570 ARGQGEPVTGRINPPSGATFEGLMMGDEG---DLYLLASD------AGYGFVAK------ 614

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            +G  Q + KA    L+L +G  +       E E +W    V   T  G +    L D  
Sbjct: 615 -LGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGAW----VAAVTNEGRLLVFPLEDLP 669

Query: 667 QINRS------GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           Q+ R       G    ++ SR+E +       + D L+     +  +   S ++ + G  
Sbjct: 670 QMARGKGNKIIGIPTARVQSREEFVIAVQVLTDKDTLVVYAGKRHHKLKFSDLKHYCGER 729

Query: 721 SVGVRGISLAKGDQVISMAIV 741
             G RG  L +G Q +   +V
Sbjct: 730 --GRRGNKLPRGFQKVDAMLV 748


>gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001]
 gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 251/734 (34%), Positives = 383/734 (52%), Gaps = 73/734 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+  N K VK AR+ 
Sbjct: 21  LTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+++R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDG  QEP  L AR P +L+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 SKLLLDEIDQGTVDFMPNYDGVEQEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I    LM+ + GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKIAHADLMQHMPGPDFPGGGQIISSEAEIAAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
             +  + Q+V+TE+P       +LE+I E                 L  ++ ++ + D +
Sbjct: 261 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLSLLDAV 320

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +    R+V E K         +N L  +TSL+S  S+N+V + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                              LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 LM--------------------------AAFGLSDRQADDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L+S S +  ++ +E+ +   +    RRT +++       E  ++ E
Sbjct: 472 LADLRDEKAKLEELLASESAMKRLLIKEIEADAKQYGDERRT-LIQQEKRATYEARVIDE 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 531 PVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYAAFPCRTPDTLIAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +          ++  +  ++ A+ +G 
Sbjct: 583 RVYSVAVASLPGG--RGDGVPVTSLIELESGSHLMHYY------AAAADQALLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+ +      + +   +  G+ + F I  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDASQVACLSSTGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISL 729
            +G    G RG++L
Sbjct: 695 LSG----GGRGVTL 704


>gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY]
 gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY]
          Length = 784

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 242/691 (35%), Positives = 359/691 (51%), Gaps = 77/691 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KK 70
           S+ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K
Sbjct: 18  SLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPNRNVAAK 77

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+G++HPHG+ + YDAL R+AQD++ R  LI+GQGNFGS DGD  AA RY
Sbjct: 78  PVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDGQGNFGSRDGDGAAAMRY 137

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD++   TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT I
Sbjct: 138 TEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEI 197

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
           P+HNL EV D CVA++  P +  + L  ++ GPD+P G  I+     I++AY TGRGS+ 
Sbjct: 198 PSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIISTDADIQDAYRTGRGSLK 257

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL---------- 299
           +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K       L          
Sbjct: 258 VRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKTGKKALTQEQTQLKAA 317

Query: 300 --------RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGY 347
                   RDES +    R+VIE K G      ++  L  +TSL++   +N  MV L+G 
Sbjct: 318 LLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTSLETSAPINLTMVGLDG- 376

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P + +L  +L+ ++ FR+  + RR+++ L+K  DR H+L G  + + N+DEV+ IIR +
Sbjct: 377 RPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQA 436

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P+ A   L+ R                           +LS+ Q   ILE+RL +L  
Sbjct: 437 DEPKAA---LIAR--------------------------FHLSDRQAEDILEIRLRQLAR 467

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L    I  EL  L  E  +  DIL++ + L  ++ +E+ +        RRT +++     
Sbjct: 468 LEAIKIEQELKELRDEQGKLEDILANPASLRRLMAKEIEADAKLFGDARRT-LIQAEKKA 526

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E  ++ E + V VS  G+V        RA++  G        +  D +   F   T  
Sbjct: 527 VAEVKVLDEPVTVVVSEKGWV--------RARQGHGHEAGSFAFKSGDGLYGTFECRTVD 578

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +++ F S G VY   V  LP G  +  G+ +  ++ L  G +       P       N  
Sbjct: 579 TLIVFGSNGRVYSVAVSSLPGG--RGDGQPITTLIELEAGTQPVHYFAGPA------NAA 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           ++ A   G    + +      NR GK  + L
Sbjct: 631 LLLAGSGGYGFLSTVEHMTARNRGGKAFVNL 661


>gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 748

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 239/737 (32%), Positives = 397/737 (53%), Gaps = 70/737 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +SSD E    I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 4   LSSDIE---NISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFV 362
            +  R+V+E K R     ++++ L+  TSL++  S+NM  L+ +  P    L  +LK ++
Sbjct: 301 -ENIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P         +S 
Sbjct: 360 AHQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDP---------KSV 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             ++ K                    LS+ Q  AIL +RL  L  L   +I  E +SL  
Sbjct: 411 MIAEFK--------------------LSDRQAEAILNMRLRALKRLEEAEITAERDSLKE 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLS---VKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           E          R+ L  +I+ + L    +K +L   R+   ++  L    +  I  +   
Sbjct: 451 E----------RAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGAR-QTLIEEQTPA 499

Query: 540 VTVSHLGYVKRVPLSVYRAQR---RGGKG----RSGVVMRDEDFVTDLFIVSTHTS--VL 590
             +     ++R P++V  ++R   RG KG    +S   MR ++     FI   +T+  +L
Sbjct: 500 KAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEADFICHAYTTDRLL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVV 649
             +  G  Y     RLP G  +  G+ +  +L ++   +I  ++P  PE       L VV
Sbjct: 560 IATEDGRFYTLLADRLPGG--RGFGEPVRLMLDISNDTKIMALLPLNPE-----GKLLVV 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            ++  G +   ++++ +   R GK  +++   + ++ ++   +++D I L  +  + + F
Sbjct: 613 SSSGRGFI--TQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKLLAF 670

Query: 709 PISAIRVFAGRNSVGVR 725
           P+S I   A  + V ++
Sbjct: 671 PLSQIPELAKGSGVQLQ 687


>gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 780

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 255/733 (34%), Positives = 374/733 (51%), Gaps = 80/733 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 24  ERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVKSARVVGDVLGKF 83

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 84  HPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLEE 143

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 144 LDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVAAATVAL 203

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +  +    LM+ + GPDFP G  I+     I   Y +GRGS+ +R    IE+ +  + 
Sbjct: 204 IRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRARWKIEELARGQW 263

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-LRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                  ++ + D +RDES + 
Sbjct: 264 QLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLGLLDAVRDESGKD 323

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L  IL+ ++
Sbjct: 324 APVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGLAEILREWI 382

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +R   V RRT++ L K  DR H+L G  + +  +++V+RIIR S  P+ A         
Sbjct: 383 TYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVEDVIRIIRESEEPKAA--------- 433

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  LI + +             LS+ Q   ILE+RL +L  L    I  EL +L  
Sbjct: 434 -------LIQVFN-------------LSDRQAEDILEIRLRQLARLEAIKIEQELKNLRE 473

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E  E   +L S + +   I +E+ +   +    RRT I E       E  +V E + V V
Sbjct: 474 EQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTFIQEE-RRAAAEVKVVDEPVTVIV 532

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS-----LGF 597
           S  G+V        R ++  G   +    +  D + D F   T  ++L F +      G 
Sbjct: 533 SQKGWV--------RTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGR 584

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY   V  LP G  +  G  L  ++ L  G  I        ++S      +V +T+ GN 
Sbjct: 585 VYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTFAGHAEQS------LVISTRGGNG 636

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
              K+ D +   ++GK  + LD  D+             +   ++ G+ + F IS ++  
Sbjct: 637 FLAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTL 696

Query: 717 AGRNSVGVRGISL 729
           A     G RG+ L
Sbjct: 697 AS----GGRGVIL 705


>gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
 gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
          Length = 784

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 250/749 (33%), Positives = 374/749 (49%), Gaps = 79/749 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K VK AR+ 
Sbjct: 26  QRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPTRSTAAKPVKSARVV 85

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL RMAQD++ R  LI+GQGNFGS DGD  AA RYTE RL + 
Sbjct: 86  GDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTEARLSRI 145

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++ + TVDF PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+HNL E+
Sbjct: 146 TSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREI 205

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+A+I  P +  D L+ ++ GPD+P G  I+   G I +AY TGRGS+ +R    IE
Sbjct: 206 ADACIALIKTPSLSQDDLLALVPGPDYPGGGQIISSAGDIADAYRTGRGSLKVRARWKIE 265

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--------------------RIVDIA 297
             +  + Q+VV E+P  V+   +LE+I E+   K                     ++D+ 
Sbjct: 266 DLARGQWQLVVNELPPGVSTQRVLEEIEEITNPKVKAGKKALSQDQTQLKASMLAVLDV- 324

Query: 298 DLRDESDRQG-YRVVIELKRGASADV-ILNQLYRYTSLQSLFSVN--MVALNGYKPERFT 353
            +RDES +    R+V E K G +    ++  L  +TSL++   +N  MV L+G KP + +
Sbjct: 325 -VRDESSKDAPVRLVFEPKTGKTPQQELITALLAHTSLETSAPINLTMVGLDG-KPVQKS 382

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+ ++AFR+  + RR+++ L K  DR H+L G    + N+DEV+ IIR +  P+ A
Sbjct: 383 LRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRAAEEPKAA 442

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ R                            LS+ Q   ILE+RL +L  L    I
Sbjct: 443 ---LIAR--------------------------FNLSDRQAEDILEIRLRQLARLEAIKI 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             EL  L     +  DIL++   L   + +E+ +        RRT +++       E  +
Sbjct: 474 EQELKELRESQGKLEDILNNPGSLRRTMVKEIEADAKTFADARRT-LIQAEKKAVAEVKV 532

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           V E + V VS  G+V        RA+   G   +    +  D +   F   T   ++ F 
Sbjct: 533 VDEPVTVIVSQKGWV--------RARTGHGHEAASFAFKAGDGLYATFECRTVDQLIGFG 584

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES---SWNNLYVVF 650
           S G VY   V +LP G  +  G+ +  ++ L  G ++      P   +   S +  Y   
Sbjct: 585 SNGRVYSVPVAQLPGG--RGDGQPVTTLIELESGTQLLHYFAGPASATLLLSNSGGYGFL 642

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+    V R K          G+              +       +   +  G+ + F I
Sbjct: 643 ASVENLVSRQKGGKAFLTLGEGETVCPPSHAAGSTGAQPLPPATHVACASAGGRILTFEI 702

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           S ++  A     G+  I L   DQ+   A
Sbjct: 703 SELKTMA-NGGRGLMLIDLEPKDQLAGAA 730


>gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113]
 gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113]
          Length = 747

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 249/737 (33%), Positives = 386/737 (52%), Gaps = 69/737 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+  + KY K AR  G+V+GKY
Sbjct: 19  EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE RL   A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPD-DPKSFAAMRYTEARLAPFAELLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            ++G+ TV++ PN+DG+ QEP +L AR P+VL+NG  GIAVGMAT+IP HNL EV   C+
Sbjct: 138 AEVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPHNLHEVAAACL 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++  P+  +  L E + GPD+PT A +I     +   Y TG+GS+ +R    +E+ +  
Sbjct: 198 HLLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRARYRVEQGN-- 255

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKRGASA 320
              IVV  +P+QV+ A +LE+IA+ ++ K++  +ADLRDESD +     V++   R    
Sbjct: 256 ---IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLVLVPHARRIEV 312

Query: 321 DVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +++ L+  T L+  + V  N++ L+G +P+   L  +L  +  FR   + RR +Y L 
Sbjct: 313 ETVMSHLFATTDLERSYRVNFNVIGLDG-RPQVKNLRDLLGEWFHFRIGTLRRRFQYRLE 371

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR  VL GL IA  N+DEVV IIR   N E  +  L+ R                  
Sbjct: 372 KVEDRLQVLAGLLIAYLNIDEVVAIIR---NEEVPKPVLIAR------------------ 410

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS+ Q  AILEL+L  L  L    I+ E  +L  E K    +L S SR+ 
Sbjct: 411 --------FKLSDRQAEAILELKLRYLARLEETKIQAENKALAAERKRLEKMLGSESRIK 462

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +++QELL+  ++    RR+ IVE      ++ +  +  E + V +S  G+V        
Sbjct: 463 DLLRQELLADTEKFGDARRSPIVERPSATALDQQSLLPAELITVVLSEKGWV-------- 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RA +      + +  R  D         ++   +F  S G  Y      LP  S + +G+
Sbjct: 515 RAAKSQDVNPAALSYRTGDSYRASARGRSNQPAVFLDSTGRSYTLPAHGLP--SARGQGE 572

Query: 617 ALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            L   L +  G E +  ++  PE+       + + A+  G     +       NR+GK  
Sbjct: 573 PLSGHLQVAPGAEFVAILLAEPEE-------FYLMASNMGYGFLCQARHLYTKNRAGKAV 625

Query: 676 MKLDSRDEIL-SVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS---LA 730
           + + +  + L  V    +E D + + T +G+ + FP+  +   A    V +  IS    A
Sbjct: 626 LNVSAGAKALPPVPVVDRELDQVAVATNVGRLLLFPLRDLPFIARGKGVKLINISSTRFA 685

Query: 731 KGDQVI-SMAIVLHADA 746
           +G + + ++A++    A
Sbjct: 686 QGQEAVRALAVISQGGA 702


>gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 746

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 237/666 (35%), Positives = 352/666 (52%), Gaps = 58/666 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S  D + + YL YA++ I  RA+PD RDGLKPVHRR+L+ M  + +  +  + KCAR+ G
Sbjct: 16  SFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRLLKLSPDTAFKKCARVVG 75

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+G++HPHG+ A+Y+AL R+AQD++ R  L+EGQGNFG+VDGD  AA RYTE RL +AA
Sbjct: 76  DVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNVDGDGAAAMRYTEARLTEAA 135

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D  + TVDFR  YDG  +EP+VL A +PN+L NG  GIAVGMATNIP HN  E+ 
Sbjct: 136 ILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSAGIAVGMATNIPPHNAAELC 195

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEK 258
           D    +I  P    + L+  ++GPDFPTG V +  R  I  AY TGRG   +R    +E+
Sbjct: 196 DAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILEAYETGRGGFRLRARWEVEE 255

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RG 317
               + QIVVTEIPY V KA ++E+IA L+ +K++  +AD+ DES  +  R+++E K R 
Sbjct: 256 LGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADVMDES-AEDVRLILEPKSRT 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYL 376
               +++  +++ T L+  F++N+  L+    P    L   L+ ++  R  VVVRR    
Sbjct: 315 IDPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEALQIWLDHRRVVVVRRATTR 374

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L    DR  VL G  +A  NLDEV+RIIRF  +P   + EL++                 
Sbjct: 375 LEHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHP---KDELIK----------------- 414

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                    T  L++ Q  AIL +RL  L  L   +IR+E + L  E  E   +++  S 
Sbjct: 415 ---------TFSLTDRQAEAILNMRLRSLRKLEEMEIRDEQSRLEGERDELNALIADESL 465

Query: 497 LLGIIKQELLSVKDELDT-----PRRTRI----VEGLLDMEDEDCIVREDMVVTVSHLGY 547
               +  E+  VK           RRT         L DM +E  I RE + + +S +G+
Sbjct: 466 QWKKVDSEVADVKKRFGPNTELGKRRTTFADAPAADLADMVEEALIPREPITIVLSRMGW 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           V        RA +      +G+  +D D         T   +L  ++ G VY     +LP
Sbjct: 526 V--------RALKGHTDDVTGIKHKDGDETAFSLKAETTDKILMLTTDGRVYTLDASKLP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  +  G+ +  ++ +++      +  +  D      L +   + HG V   K  +   
Sbjct: 578 GG--RGFGEPVRLLIDMDESAEPVALFKYSPD----RKLLLASTSGHGFVVAEK--ELPA 629

Query: 668 INRSGK 673
           I R+G+
Sbjct: 630 IKRAGR 635


>gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
 gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
          Length = 747

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 379/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYTSPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1]
          Length = 745

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 234/696 (33%), Positives = 381/696 (54%), Gaps = 57/696 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R 
Sbjct: 184 NLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVV 311
             H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+V
Sbjct: 244 TYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 312 IELKRGA-SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
           IELK+   + D I++ L+  T L++ + V  NM+ +NG KPE   L  IL  +++ R+ V
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGING-KPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R        
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 410 ------------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLG 546
           + L++   L  ++  EL++        RR+ +V+      ++  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELIADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++      + A       R+G     + ++T     ST   +L  ++ G  Y      L
Sbjct: 512 WIRAA--KGHHADPAEMNYRTG-----DAYLTHALGKSTERLILVDNT-GRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++  
Sbjct: 564 P--SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
              +SGK ++ L   D +L      Q++D L+   L
Sbjct: 619 TAQKSGKSSINL--ADGVLLPIVVMQDDDSLVAVSL 652


>gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
 gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
          Length = 747

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 251/765 (32%), Positives = 400/765 (52%), Gaps = 83/765 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +   R
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 310 VVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+    ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKV---ELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVAFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V     
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV----- 666

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRL 764
                 +S  KG+++I+   +L A+A D  E +  +  +S Q  L
Sbjct: 667 ------LSKGKGNKMIT---ILAANAKDRSELLTKLLLISDQASL 702


>gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866]
          Length = 747

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 378/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  + R +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASSRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLLFPAQDLPVLS 668


>gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 748

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 237/738 (32%), Positives = 394/738 (53%), Gaps = 72/738 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +SSD E    I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 4   LSSDIE---NISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFV 362
            +  R+V+E K R     ++++ L+  TSL++  S+NM  L+ +  P    L  +LK ++
Sbjct: 301 -ENIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P         +S 
Sbjct: 360 AHQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDP---------KSV 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             ++ K                    LS+ Q  AIL +RL  L  L   +I  E +SL  
Sbjct: 411 MIAEFK--------------------LSDRQAEAILNMRLRALKRLEEAEITAERDSLKE 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-------EDCIVR 535
           E      ++ S +     +K +L +++       +    + L++ +        +  I R
Sbjct: 451 ERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGARQTLIEEQTPAKAIPLDAMIER 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKG----RSGVVMRDEDFVTDLFIVSTHTS--V 589
           E M V +S  G++            RG KG    +S   MR ++     FI   +T+  +
Sbjct: 511 EPMTVVLSKRGWI------------RGLKGHVDLKSTEAMRFKEGDEADFICHAYTTDRL 558

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYV 648
           L  +  G  Y     RLP G  +  G+ +  +L ++   +I  ++P  PE       L V
Sbjct: 559 LIATEDGRFYTLLADRLPGG--RGFGEPVRLMLDISNDTKIMALLPLNPE-----GKLLV 611

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVR 707
           V ++  G +   ++++ +   R GK  +++   + ++ ++   +++D I L  +  + + 
Sbjct: 612 VSSSGRGFI--TQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKLLA 669

Query: 708 FPISAIRVFAGRNSVGVR 725
           FP+S I   A  + V ++
Sbjct: 670 FPLSQIPELAKGSGVQLQ 687


>gi|213051497|ref|ZP_03344375.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 520

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 193/450 (42%), Positives = 281/450 (62%), Gaps = 12/450 (2%)

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+
Sbjct: 2   LRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDII 61

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AFV  R EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+
Sbjct: 62  SAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALI 121

Query: 419 QRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGR 470
            R W+  ++  +++   D +          G  DG  YL+E Q +AIL+LRL +LTGL  
Sbjct: 122 SRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEH 181

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + + +E   L  +I E L IL S  RL+ +I++E+  ++D+    RRT I     D+  E
Sbjct: 182 EKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIE 241

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L
Sbjct: 242 DLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 301

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSS G +Y  KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  
Sbjct: 302 CFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFM 358

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  
Sbjct: 359 ATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKE 418

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            A+R   GR + GVRGI LA  D+V+S+ I
Sbjct: 419 DAVRAM-GRTATGVRGIKLAGDDKVVSLII 447


>gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D]
 gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D]
          Length = 780

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 255/733 (34%), Positives = 374/733 (51%), Gaps = 80/733 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 24  ERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVKSARVVGDVLGKF 83

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 84  HPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLEE 143

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 144 LDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVAAATVAL 203

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +  +    LM+ + GPDFP G  I+     I   Y +GRGS+ +R    IE+ +  + 
Sbjct: 204 IRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRARWKIEELARGQW 263

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-LRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                  ++ + D +RDES + 
Sbjct: 264 QLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLGLLDAVRDESGKD 323

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L  IL+ ++
Sbjct: 324 APVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGLAEILREWI 382

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +R   V RRT++ L K  DR H+L G  + +  +++V+RIIR S  P+ A         
Sbjct: 383 TYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEEPKAA--------- 433

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  LI + +             LS+ Q   ILE+RL +L  L    I  EL +L  
Sbjct: 434 -------LIQVFN-------------LSDRQAEDILEIRLRQLARLEAIKIEQELKNLRE 473

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E  E   +L S + +   I +E+ +   +    RRT I E       E  IV E + V V
Sbjct: 474 EQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTLIQEE-RRAAAEVKIVDEPVTVIV 532

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS-----LGF 597
           S  G+V        R ++  G   +    +  D + D F   T  ++L F +      G 
Sbjct: 533 SQKGWV--------RTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGR 584

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY   V  LP G  +  G  L  ++ L  G  I        +++      +V +T+ GN 
Sbjct: 585 VYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTFAGHAEQN------LVISTRGGNG 636

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
              K+ D +   ++GK  + LD  D+             +   ++ G+ + F IS ++  
Sbjct: 637 FLAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTL 696

Query: 717 AGRNSVGVRGISL 729
           A     G RG+ L
Sbjct: 697 AS----GGRGVIL 705


>gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
 gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
          Length = 784

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 242/691 (35%), Positives = 359/691 (51%), Gaps = 77/691 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KK 70
           S+ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K
Sbjct: 18  SLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPNRNVAAK 77

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+G++HPHG+ + YDAL R+AQD++ R  LI+GQGNFGS DGD  AA RY
Sbjct: 78  PVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDGQGNFGSRDGDGAAAMRY 137

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD++   TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT I
Sbjct: 138 TEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEI 197

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
           P+HNL EV D CVA++  P +  + L  ++ GPD+P G  I+     I++AY TGRGS+ 
Sbjct: 198 PSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIISTDADIQDAYRTGRGSLK 257

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL---------- 299
           +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K       L          
Sbjct: 258 VRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKTGKKALTQEQTQLKAA 317

Query: 300 --------RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGY 347
                   RDES +    R+VIE K G      ++  L  +TSL++   +N  MV L+G 
Sbjct: 318 LLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTSLETSAPINLTMVGLDG- 376

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P + +L  +L+ ++ FR+  + RR+++ L+K  DR H+L G  + + N+DEV+ IIR +
Sbjct: 377 RPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQA 436

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P+ A   L+ R                           +LS+ Q   ILE+RL +L  
Sbjct: 437 DEPKAA---LIAR--------------------------FHLSDRQAEDILEIRLRQLAR 467

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L    I  EL  L  E  +  DIL++ + L  ++ +E+ +        RRT +++     
Sbjct: 468 LEAIKIEQELKELRDEQGKLEDILANPASLRRLMVKEIEADAKLFGDARRT-LIQAEKKA 526

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E  ++ E + V VS  G+V        RA++  G        +  D +   F   T  
Sbjct: 527 VAEVKVLDEPVTVVVSEKGWV--------RARQGHGHEAGSFAFKSGDGLYGTFECRTVD 578

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +++ F S G VY   V  LP G  +  G+ +  ++ L  G +       P       N  
Sbjct: 579 TLIVFGSNGRVYSVAVSSLPGG--RGDGQPITTLIELEAGTQPVHYFAGPA------NAA 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           ++ A   G    + +      NR GK  + L
Sbjct: 631 LLLAGSGGYGFLSTVEHMTARNRGGKAFVNL 661


>gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
          Length = 767

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 252/732 (34%), Positives = 377/732 (51%), Gaps = 75/732 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G   +++    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K V
Sbjct: 12  DQGGDDITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPV 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A YDA+ RMAQD+ LR  L++GQGNFGS DGD  AA RYTE
Sbjct: 72  KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LLD+L + TVDF  NYDGS +EPV+L AR P +L+NG  GIAVGMAT IP+
Sbjct: 132 ARLTPFARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPS 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HNL EV   CVA+I NP +  + L  ++ GPDF  G  I+     I + YA+GRGSI  R
Sbjct: 192 HNLREVAQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKAR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE------------LVREKRIVD---- 295
                E+ +  + Q+VV E+P   +   +LE+I +            L  E++ +     
Sbjct: 252 ARWQFEELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALML 311

Query: 296 --IADLRDESDRQ-GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPE 350
             +  +RDES +    R+V E K      D  +N L   TS++   S+N+V +    +P 
Sbjct: 312 GLLDAVRDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPG 371

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +  L  +L  ++ FR + + RRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P
Sbjct: 372 QRALRQVLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEP 431

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
             A   LMQR                            LSE Q   ILE+RL +L  L  
Sbjct: 432 RAA---LMQR--------------------------FDLSERQAEDILEMRLRQLARLEG 462

Query: 471 DDIRNELNSLGIE---IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
             I  EL +   E   ++E LD  S+  RL+  IK E+ +   +    RRT ++E     
Sbjct: 463 FKIEKELAAQRDEQAALRELLDNPSAFKRLM--IK-EIEADAKQYGDDRRT-LIEVAERA 518

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E+ +V E + V +S  G++        R+++  G   S    +  D + D     +  
Sbjct: 519 VLENRVVEEPVTVIISQRGWL--------RSRQGHGHDASQFNFKAGDGLYDAIECLSTD 570

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS+ G VY   V  LP  S +  G+ + +++ +  G RIT ++     +       
Sbjct: 571 ELVAFSNTGRVYTVAVSSLP--SARGDGQPVTSMMEVESGSRITHMIAGAAQQR------ 622

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCV 706
            V  T+ G      L D     R+GK  + LD  D ++  +     +  + +  K G+ +
Sbjct: 623 YVLGTQAGYGFITTLKDLTTRQRAGKQFITLDDGDVLIKPLRLRDTDQHLAMLAKKGRFL 682

Query: 707 RFPISAIRVFAG 718
              +S ++  +G
Sbjct: 683 VVALSELKRLSG 694


>gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J]
 gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J]
          Length = 780

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 254/733 (34%), Positives = 375/733 (51%), Gaps = 80/733 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 24  ERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVKSARVVGDVLGKF 83

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 84  HPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLEE 143

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 144 LDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVAAATVAL 203

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +  +    LM+ + GPDFP G  I+     I   Y +GRGS+ +R    IE+ +  + 
Sbjct: 204 IRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRARWKIEELARGQW 263

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-LRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                  ++ + D +RDES + 
Sbjct: 264 QLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLGLLDAVRDESGKD 323

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V E K +        N L  +TSL+S  ++N  M+  +G +P +  L  IL+ ++
Sbjct: 324 APVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDG-RPRQKGLAEILREWI 382

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +R   V RRT++ L K  DR H+L G  + +  +++V+RIIR S +P+ A         
Sbjct: 383 VYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEDPKAA--------- 433

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  LI + +             LS+ Q   ILE+RL +L  L    I  EL +L  
Sbjct: 434 -------LIQVFN-------------LSDRQAEDILEIRLRQLARLEAIKIEQELKNLRE 473

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E  E   +L S + +   I +E+ +   +    RRT I E       E  +V E + V V
Sbjct: 474 EQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTFIQEE-RRAAAEVKVVDEPVTVIV 532

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS-----LGF 597
           S  G+V        R ++  G   +    +  D + D F   T  ++L F +      G 
Sbjct: 533 SQKGWV--------RTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGR 584

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY   V  LP G  +  G  L  ++ L  G  I        +++      +V +T+ GN 
Sbjct: 585 VYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHTFAGHAEQN------LVISTRGGNG 636

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
              K+ D +   ++GK  + LD  D+             +   ++ G+ + F IS ++  
Sbjct: 637 FLAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRMLLFQISELKTL 696

Query: 717 AGRNSVGVRGISL 729
           A     G RG+ L
Sbjct: 697 AS----GGRGVIL 705


>gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 748

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 243/738 (32%), Positives = 396/738 (53%), Gaps = 72/738 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +SSD E    I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 4   LSSDIE---NISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFV 362
            +  R+V+E K R     ++++ L+  TSL++  S+NM  L+ +  P    L  +LK ++
Sbjct: 301 -ENIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P         +S 
Sbjct: 360 AHQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDP---------KSV 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             ++ K                    LS+ Q  AIL +RL  L  L   +I  E +SL  
Sbjct: 411 MIAEFK--------------------LSDRQAEAILNMRLRALKRLEEAEITAERDSLKE 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLS---VKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           E          R+ L  +I+ + L    +K +L   R+   ++  L    +  I  +   
Sbjct: 451 E----------RAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLGAR-QTLIEEQTPA 499

Query: 540 VTVSHLGYVKRVPLSVYRAQR---RGGKG----RSGVVMRDEDFVTDLFIVSTHTS--VL 590
             +     ++R P++V  ++R   RG KG    +S   MR ++     FI   +T+  +L
Sbjct: 500 KAIPLDAMIEREPMTVVLSKRGWIRGLKGHVDLKSTEAMRFKEGDEADFICHAYTTDRLL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVV 649
             +  G  Y     RLP G  +  G+ +  +L ++   +I  ++P  PE       L VV
Sbjct: 560 IATEDGRFYTLLADRLPGG--RGFGEPVRLMLDISNDTKIMALLPLNPE-----GKLLVV 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVR 707
            ++  G +   ++++ +   R GK  +++  +DE L V    +E  + I L  +  + + 
Sbjct: 613 SSSGRGFI--TQMTNLVAETRKGKQIVRV-KKDEYLMVLKVIEEGHDHIALIGENRKLLA 669

Query: 708 FPISAIRVFAGRNSVGVR 725
           FP+S I   A  + V ++
Sbjct: 670 FPLSQIPELAKGSGVQLQ 687


>gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21]
          Length = 747

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 244/741 (32%), Positives = 392/741 (52%), Gaps = 85/741 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  +  I+  Y  GRGSI +
Sbjct: 186 PHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+T   ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDPKT---ELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  +PR +++V  E    + + +    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESEMTPAEPVTVILSEM 511

Query: 546 GYVKRV------PLSV-YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           G+V+        P S+ Y+A   G   R+    +            ++ +V+F  S G  
Sbjct: 512 GWVRCAKGHDIDPKSLNYKA---GDSYRAHACGK------------SNQAVVFIDSTGRS 556

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G   
Sbjct: 557 YALDPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMAGEQQE------LLMASDAGYGF 608

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             K  D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V  
Sbjct: 609 ICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVIAITSAGRMLIFPAQDLPV-- 666

Query: 718 GRNSVGVRGISLAKGDQVISM 738
                    +S  KG+++I++
Sbjct: 667 ---------LSKGKGNKIITI 678


>gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1]
 gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169]
 gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8]
 gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
 gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72]
          Length = 745

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 234/696 (33%), Positives = 380/696 (54%), Gaps = 57/696 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R 
Sbjct: 184 NLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVV 311
             H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+V
Sbjct: 244 TYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 312 IELKRGA-SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
           IELK+   + D I++ L+  T L++ + V  NM+ +NG KPE   L  IL  +++ R+ V
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGING-KPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R        
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 410 ------------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLG 546
           + L++   L  ++  EL +        RR+ +V+      ++  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++      + A       R+G     + ++T     ST   +L  ++ G  Y      L
Sbjct: 512 WIRAA--KGHHADPAEMNYRTG-----DAYLTHALGKSTERLILVDNT-GRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++  
Sbjct: 564 P--SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
              +SGK ++ L   D +L      Q++D L+   L
Sbjct: 619 TAQKSGKSSINL--ADGVLLPIVVMQDDDSLVAVSL 652


>gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
 gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/485 (41%), Positives = 286/485 (58%), Gaps = 41/485 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 19  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKY 78

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 79  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLL 137

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +
Sbjct: 138 GELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVI 197

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS+ +R +   E  S  
Sbjct: 198 ALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSVRMRALWKKEDGSA- 256

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
               V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 257 ----VITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDL 312

Query: 323 --ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ FR + V  R  Y L K
Sbjct: 313 DQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFRRQTVRNRLNYRLEK 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL IA  N+DEV+ IIR    P+     LMQ                    
Sbjct: 373 VLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL---LMQH------------------- 410

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +SE Q  AILEL+L  L  L    IR E + L  E  +   +L+S  +L  
Sbjct: 411 -------FSISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNT 463

Query: 500 IIKQE 504
           +IK+E
Sbjct: 464 LIKKE 468


>gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7]
          Length = 745

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 234/696 (33%), Positives = 380/696 (54%), Gaps = 57/696 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R 
Sbjct: 184 NLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVV 311
             H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+V
Sbjct: 244 TYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 312 IELKRGA-SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
           IELK+   + D I++ L+  T L++ + V  NM+ +NG KPE   L  IL  +++ R+ V
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGING-KPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R        
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 410 ------------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLG 546
           + L++   L  ++  EL +        RR+ +V+      ++  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++      + A       R+G     + ++T     ST   +L  ++ G  Y      L
Sbjct: 512 WIRAA--KGHHADPAEMNYRTG-----DAYLTHALGKSTERLILVDNT-GRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++  
Sbjct: 564 P--SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
              +SGK ++ L   D +L      Q++D L+   L
Sbjct: 619 TAQKSGKSSINL--ADGVLLPIVVMQDDDSLVAVSL 652


>gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
 gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
          Length = 801

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 246/737 (33%), Positives = 396/737 (53%), Gaps = 70/737 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+  RA+P + DG+KPV RRIL+ M +M +    K+VK AR+ G+V+GKY
Sbjct: 61  ERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARVVGDVIGKY 120

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL   A  LL +
Sbjct: 121 HPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAELLLSE 180

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNL EV +    +
Sbjct: 181 IDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVAEATCHL 240

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +P+  LD ++ ++ GPDFP G  +I     I++AYA GRGS+ +R    IE+ +  + 
Sbjct: 241 IRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRIEELARGQW 300

Query: 265 QIVVTEIPYQVNKAAMLEKI------------AELVREKR-----IVDIAD-LRDE-SDR 305
           +++V E+P+ V+ A +L +I             E+ +E++     ++ + D +RDE SD+
Sbjct: 301 RVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDTVRDESSDK 360

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+E K    S D  +  L  +TSL++  SVNM  +    +P++  L+ IL+ ++ 
Sbjct: 361 APVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLVQILREWID 420

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RRT++ L++   R H+L G  IA  ++++V+R+IR S  P+ A          
Sbjct: 421 FRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPA---------- 470

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 LI                 LS+VQ   ILE+RL +L  L    I  ELN L  E
Sbjct: 471 ------LI-------------AAFGLSDVQAEDILEIRLRQLARLEGFKIEKELNELKEE 511

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
            +    +L +RS +  +I +E+     +    RRT I         E  +  E + V +S
Sbjct: 512 REGLQHVLDNRSAMTRLILKEIGEDTKKYGDDRRTLIETVAPIASAEISVADEPVTVILS 571

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+++  G   + +  +  DF   L    T   ++   + G  Y  KV
Sbjct: 572 KNGWI--------RSRQGHGLDAAAISYKAGDFAFALLETRTTWPLIVIDTHGRAYTVKV 623

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G  +  G  +  ++    G +   ++   +  ++W     +FA   G      ++
Sbjct: 624 SDLPGG--RGDGVPIATLVEFQDGGKPAQVV-SDDPATTW-----LFANSGGYGFLCSVA 675

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D     R+GK  M L+  +++L+      E  I   ++ G+ + FP + ++  +G   V 
Sbjct: 676 DATSRQRAGKAFMALEKGEKVLAPAKVFGEW-IAAGSENGRILVFPRAEMKTQSGGRGVI 734

Query: 724 VRGISLAKGDQVISMAI 740
           V  ++L +G+ + ++A+
Sbjct: 735 V--MALDEGEALSAVAV 749


>gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 785

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 251/744 (33%), Positives = 381/744 (51%), Gaps = 92/744 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DG+KPV RRILF M +MG+ +         K VK AR+ 
Sbjct: 27  QRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL R+AQD+S R  LI+GQGNFGS DGD  AA RYTE RL + 
Sbjct: 87  GDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TV F PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+HNL E+
Sbjct: 147 ASLLLDEIDQGTVGFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREI 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D CVA++ NP +  + L  ++ GPD+P G  I+   G I++AY TGRGS+ +R    IE
Sbjct: 207 ADACVALVKNPKLADEELAAMVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIE 266

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
             +  + Q+VVTE+P  V+   +LE+I EL   K                  ++ + D +
Sbjct: 267 DLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDVV 326

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLI 355
           RDES +    R+V E K G      ++  L  +TSL++   +N  MV L+G KP + +L 
Sbjct: 327 RDESSKDAPVRIVFEPKTGKVPQQELITTLLAHTSLETSAPINLTMVGLDG-KPVQKSLR 385

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++AFR++ + RR+++ L K  DR H+L G    + N+DEV+ IIR +  P+ A  
Sbjct: 386 RMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRTADEPKAA-- 443

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++R                            LS+ Q   ILE+RL +L  L    I  
Sbjct: 444 -LIER--------------------------FRLSDRQAEDILEIRLRQLARLEAIKIEQ 476

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  DIL++ + L  ++ +E+ +   +    RRT +++       E  +V 
Sbjct: 477 ELKELREEQGKLEDILANPASLRRLMVKEIEADAKQFADARRT-LIQADKRATAEVKVVD 535

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA++  G        +  D +   F   T  +++ F S 
Sbjct: 536 EPVTVVVSQKGWV--------RARQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSN 587

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE----SSWNNLYVVFA 651
           G VY   V +LP    +  G+ +  ++ L  G +       P +     +       + A
Sbjct: 588 GRVYSVAVSQLP--GARGDGQPITTLIELEAGTQPVHYFAGPANAALLLAGSGGYGFIAA 645

Query: 652 TKHGNVRRNKLSDFI------QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            +H   R      F+      Q+ R    A    S+  + +   C         +  G+ 
Sbjct: 646 VEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGSQALVPATHVCC-------ASAGGRI 698

Query: 706 VRFPISAIRVFAGRNSVGVRGISL 729
           + F I+ ++  A     G RG+ L
Sbjct: 699 LTFEITELKQMAN----GGRGLML 718


>gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815]
 gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815]
          Length = 773

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 257/749 (34%), Positives = 390/749 (52%), Gaps = 75/749 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF+EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I +P I    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVAMIRHPKITHAELMQLVPGPDFPGGGQIISSEAEISQAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-L 299
             +  + Q+V+TE+P   +   +LE+I E                 L  ++ ++ + D +
Sbjct: 260 DLARGQWQLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKSLTPEQLQTKQTLLGLLDAV 319

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG- 356
           RDES +    R+V E K         +N L  +TSL+S  ++N+V +      R   IG 
Sbjct: 320 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNATLNLVMVGADGRPRQKGIGE 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L  ++ FR   V RR+++ LNK  +R H+L G  I   N+DEV+RIIR S  P+ A  E
Sbjct: 380 MLHEWIGFRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNIDEVIRIIRESEEPKAALIE 439

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
             +                             LS+ Q   ILE+RL +L  L    I  E
Sbjct: 440 AFK-----------------------------LSDRQAEDILEIRLRQLARLEAIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L+ L  E  +  ++L S   +  ++ +E+ +   +    RRT +++       E  +V E
Sbjct: 471 LSELRDEKAKLEELLGSEPAMKRLLIKEIEADAKQYGDDRRT-LIQQEKRATFEARVVDE 529

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S G
Sbjct: 530 PVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDGLYAAFQCRTPDMLIAWGSKG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V +LP G    RG   + + SL + E  T +M +    ++     ++ A+ +G 
Sbjct: 582 RVYSVAVSQLPGG----RGDG-VPVTSLIELESGTHLMHY---YAASAEQALLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     L+ +        +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKVGDMVSRVKAGKAFMTIDEGATPLAPMPMLPDATQVACLSGGGRLLVFGLDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGD--QVISMAIVL 742
            +G    G RG+ L   D  +V+  A+ +
Sbjct: 694 LSG----GGRGVILMALDPNEVLKQALAI 718


>gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
 gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
          Length = 747

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 238/717 (33%), Positives = 378/717 (52%), Gaps = 68/717 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGSI +
Sbjct: 186 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +K  G   +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    
Sbjct: 246 RAT--WKKEDG---EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIR 300

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR  
Sbjct: 301 IVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R       
Sbjct: 361 TVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL LRL  L  L  + ++ E + L  E    
Sbjct: 411 -------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+     +  + R +++V  E    + + D    E + V +S +
Sbjct: 452 EAILGSERRLNTLIKKEIQEDAKKYASSRMSQLVEREEAKMISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D         ++ +V+F  S G  Y  
Sbjct: 512 GWV------------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K
Sbjct: 560 DPLSLP--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             D I  N++GK  + L    ++L  +T      +++  T  G+ + FP   + V +
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS 668


>gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
 gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
          Length = 769

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 250/739 (33%), Positives = 376/739 (50%), Gaps = 78/739 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVK 73
           ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+ +      K +K
Sbjct: 16  AITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERLGLAFTTAGGPKAMK 75

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+G+YHPHG+ A YDAL RMAQD+S R  LI+GQGNFGS DGD  AA RYTE 
Sbjct: 76  SARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEA 135

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL      LLD++ + TVDF PNYDGS QEP  L AR P VL+NG  GIAVG+AT IP+H
Sbjct: 136 RLAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGASGIAVGLATEIPSH 195

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EV    VA+I    +  D L  ++ GPD+P G  +I     I++AY +GRGS+ +R 
Sbjct: 196 NLREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIRDAYRSGRGSLKVRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVD 295
              IE  +  +  +VVTE+P   +   +LE+I EL   K                  ++ 
Sbjct: 256 KWKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKALSAEQTQLKTTVLA 315

Query: 296 IAD-LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPE 350
           + D +RDES ++   R+V E K R      ++N L  +TSL++  S+N  MV  +G +P 
Sbjct: 316 VLDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSASINLTMVGADG-RPT 374

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + ++  +L  ++ FR E V RRT++ L K  DR H+L G  + + N+DEV+RIIR +  P
Sbjct: 375 QKSMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNIDEVIRIIRNADEP 434

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + A   L++R                            LS+ Q   ILE+RL +L  L  
Sbjct: 435 KPA---LIER--------------------------FRLSDRQAEDILEIRLRQLARLEA 465

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL SL  E     +IL+S + L   + +E+ +        RRT +++       E
Sbjct: 466 IKIEQELKSLREEQGRLEEILNSPAALKRTVVKEIEADAKTHGDERRT-LIQAEKKAVAE 524

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             +V E + V +S  G+V        RA++  G   +    +  D +   F   T  ++L
Sbjct: 525 VKVVDEPVTVVISSKGWV--------RARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLL 576

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G VY   V  LP    +  G+ + +++ L  G +       P D +      ++ 
Sbjct: 577 VFGSNGRVYSVAVSGLP--GARGDGQPITSMIELESGTQPQHYFAGPADAT------LLL 628

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G     K  D     R GK  + L   ++ L          I   +  G+ + F +
Sbjct: 629 ANTGGYGLLAKAGDLQSRQRGGKGFLTLAEGEKPLPPSRADAAGQIACLSLGGRLLVFAL 688

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +++       G RG++L
Sbjct: 689 DDLKL----QPKGGRGLTL 703


>gi|13810769|gb|AAK40029.1|AF272019_1 DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 161/260 (61%), Positives = 207/260 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDR 305
           +LVR+K+I  I DLRDESDR
Sbjct: 241 DLVRDKKIEGITDLRDESDR 260


>gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
 gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
          Length = 742

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 354/635 (55%), Gaps = 84/635 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++ NP+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI--- 312
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +K+      I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + 
Sbjct: 307 TIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R          
Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL +RL +L  +   +I+ E   L  E +     
Sbjct: 411 ----------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGY 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++
Sbjct: 455 LNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKE 601
                       R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y  
Sbjct: 515 ------------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSM 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            + +L    P ARG           GE ITT +P 
Sbjct: 560 YIDKL----PSARG----------YGEHITTYIPL 580


>gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2]
          Length = 803

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 235/635 (37%), Positives = 344/635 (54%), Gaps = 71/635 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K VK AR+ 
Sbjct: 32  QRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKPVKSARVV 91

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL RMAQD++ R  L++GQGNFGS DGD  AA RYTE RL K 
Sbjct: 92  GDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKI 151

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++   TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 152 TGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEV 211

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
              CVA+I  P +  + L+ +I GPD+P G  I+  +  I +AY TGRGS+ +R    IE
Sbjct: 212 AAACVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIE 271

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+VVTE+P  V+   +LE+I ++   K                  ++ + D +
Sbjct: 272 ELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCV 331

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLI 355
           RDES +    R+V E K G      ++  L  +TSL+S  S+N+  + L+G +P + +L 
Sbjct: 332 RDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDG-RPVQKSLR 390

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++AFR + V RR+++ L K  DR H+L G    + N+D+V+ IIR S  P+ A  
Sbjct: 391 QMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQA-- 448

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LID  +             LSE Q   ILE+RL +L  L    I  
Sbjct: 449 --------------LIDAFN-------------LSERQAEDILEIRLRQLARLEAIKIEQ 481

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  DIL S + +  +I +E+ +        RRT ++     +  E  +V 
Sbjct: 482 ELKELRSEQGKLEDILGSEATMRRLICKEIEADAKTFGDARRT-LIHEEKKVVAEVKVVD 540

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V +S  G+V        R ++  G   + +  +  D +   F   T   +L F S 
Sbjct: 541 EPTTVIISEKGWV--------RTRQGHGVDAATLSFKAGDSLYGTFECRTVDQLLAFGSN 592

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           G VY   V  LP G  +  G+ +  ++ L  G ++
Sbjct: 593 GRVYSVPVSALPGG--RGDGQPVTTMIELEAGTQL 625


>gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
 gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
          Length = 772

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 227/691 (32%), Positives = 367/691 (53%), Gaps = 58/691 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P++ DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 22  SVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAKAKKSARTVG 81

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE ++  
Sbjct: 82  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTEAKMSA 140

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ LL +LG+ TVD++ N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 141 YANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILLNGTTGIAVGMATDIPPHNLIE 200

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV   + ++ NP++ +  L + I  PD PT A +I  +  ++  Y TGRGS  +R   HI
Sbjct: 201 VVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAMYETGRGSYKMRATFHI 260

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
           +    ++  +++  +PYQV+   + E+IA+L+ +K++  I D+ DESD +   R+V+EL+
Sbjct: 261 DPK--EKNLVIIDALPYQVSGNKIQEQIAKLMTDKKLPWITDIHDESDHENACRIVLELR 318

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                 D +++ L+  T L+S + V  NM+ LNG KP+   L  IL+ ++  R  VV RR
Sbjct: 319 STRVDVDRVMSHLFASTDLESNYRVNMNMIGLNG-KPQVKNLKEILEEWLVCRRSVVTRR 377

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L+K   R H+L GL IA  N+DEV+RIIR   +P+ +   LMQ             
Sbjct: 378 LQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLS---LMQ------------- 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                 Y         L+++Q  AIL++RL +L  L   ++R E + L  E     + L 
Sbjct: 422 -----DYD--------LTDIQANAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLD 468

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  ++  EL +   E    R + +   E    +++ D +  E +   +S  G++  
Sbjct: 469 NPDSLTTLMIDELTADMKEHGNERVSPLAEREEAQALKESDLVPSEPITAVLSKAGWI-- 526

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +      +G+  R  D         ++  +    S G  Y      L   S
Sbjct: 527 ------RAAKGHDVDAAGMSYRSGDAYQAHVRGKSNEKIYVLDSTGRSYSIDAHSL--AS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            + +G  L ++L    G     ++   +D+       ++ A+  G    N + +     +
Sbjct: 579 ARGQGDPLTSVLKPPAGATFEQLLTGADDQR------IILASSQGYGFINTIGNLDSNQK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           +GK  + L +   +L +     + D+L++ +
Sbjct: 633 AGKNIINLAANSRLLPIACIDTQADLLVSAE 663


>gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 741

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 354/635 (55%), Gaps = 84/635 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI--- 312
           +  S     +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 DNHSN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +K+      I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + 
Sbjct: 307 TIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +  L+K  DR H+L GL IA  N+DEV+ IIR   N + +  EL  R          
Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIR---NYDDSSGELQTR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL +RL +L  +   +I+ E   L  E +     
Sbjct: 411 ----------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGY 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++
Sbjct: 455 LNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKE 601
                       R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y  
Sbjct: 515 ------------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSM 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            + +L    P ARG           GE ITT +P 
Sbjct: 560 YIDKL----PSARG----------YGEHITTYIPL 580


>gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 741

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 355/635 (55%), Gaps = 84/635 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA I+G +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI--- 312
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +K+      I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + 
Sbjct: 307 TIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +  L+K  DR H+L GL IA  N+DEV+ IIR   N + +  EL  R          
Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIR---NYDDSSGELQTR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL +RL +L  +   +I+ E   L  E +     
Sbjct: 411 ----------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGY 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++
Sbjct: 455 LNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKE 601
                       R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y  
Sbjct: 515 ------------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSM 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            + +L    P ARG           GE ITT +P 
Sbjct: 560 YIDKL----PSARG----------YGEHITTYIPL 580


>gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
 gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
          Length = 796

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 236/636 (37%), Positives = 345/636 (54%), Gaps = 73/636 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K VK AR+ 
Sbjct: 25  QRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKPVKSARVV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL RMAQD++ R  L++GQGNFGS DGD  AA RYTE RL K 
Sbjct: 85  GDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKI 144

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++   TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 145 TGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEV 204

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
              CVA+I  P +  + L+ +I GPD+P G  I+  +  I +AY TGRGS+ +R    IE
Sbjct: 205 AAACVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+VVTE+P  V+   +LE+I ++   K                  ++ + D +
Sbjct: 265 ELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCV 324

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLI 355
           RDES +    R+V E K G      ++  L  +TSL+S  S+N+  + L+G +P + +L 
Sbjct: 325 RDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDG-RPVQKSLR 383

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++AFR + V RR+++ L K  DR H+L G    + N+D+V+ IIR S  P+ A  
Sbjct: 384 QMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQA-- 441

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LID  +             LSE Q   ILE+RL +L  L    I  
Sbjct: 442 --------------LIDAFN-------------LSERQAEDILEIRLRQLARLEAIKIEQ 474

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  DIL S + +  +I +E+ +        RRT ++     +  E  +V 
Sbjct: 475 ELKELRSEQGKLEDILGSEATMRRLICKEIEADAKTFGDARRT-LIHEEKKVVAEVKVVD 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSS 594
           E   V +S  G+V+          R+G    +G +  +  D +   F   T   +L F S
Sbjct: 534 EPTTVIISEKGWVR---------TRQGHGVDAGTLSFKAGDSLYGTFECRTVDQLLAFGS 584

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            G VY   V  LP G  +  G+ +  ++ L  G ++
Sbjct: 585 NGRVYSVPVSALPGG--RGDGQPVTTMIELEAGTQL 618


>gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
 gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
          Length = 796

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 344/635 (54%), Gaps = 71/635 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++        K VK AR+ 
Sbjct: 25  QRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAMERMGLSYSGPNGNTAAKPVKSARVV 84

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL RMAQD++ R  L++GQGNFGS DGD  AA RYTE RL K 
Sbjct: 85  GDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKI 144

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++   TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 145 TGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEV 204

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
              CVA+I  P +  + L+ +I GPD+P G  I+  +  I +AY TGRGS+ +R    IE
Sbjct: 205 AAACVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
           + +  + Q+VVTE+P  V+   +LE+I ++   K                  ++ + D +
Sbjct: 265 ELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCV 324

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLI 355
           RDES +    R+V E K G      ++  L  +TSL+S  S+N+  + L+G +P + +L 
Sbjct: 325 RDESSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDG-RPVQKSLR 383

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++AFR + V RR+++ L K  DR H+L G    + N+D+V+ IIR S  P+ A  
Sbjct: 384 QMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQA-- 441

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         LI+  +             LSE Q   ILE+RL +L  L    I  
Sbjct: 442 --------------LIEAFN-------------LSERQAEDILEIRLRQLARLEAIKIEQ 474

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  E  +  DIL S + +  +I +E+ +        RRT ++     +  E  +V 
Sbjct: 475 ELKELRSEQGKLEDILGSEATMRRLICKEIEADAKTFGDARRT-LIHEEKKVVAEVKVVD 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V +S  G+V        R ++  G   + +  +  D +   F   T   +L F S 
Sbjct: 534 EPTTVIISEKGWV--------RTRQGHGVDAATLSFKAGDSLYGTFECRTVDQLLAFGSN 585

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           G VY   V  LP G  +  G+ +  ++ L  G ++
Sbjct: 586 GRVYSVPVSALPGG--RGDGQPVTTMIELEAGTQL 618


>gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
 gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
          Length = 756

 Score =  347 bits (891), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 245/740 (33%), Positives = 383/740 (51%), Gaps = 63/740 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLNAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNGVTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+   C+ +IDNP  +L  LME++ GPD+PT A +I     I   Y +GRGSI +R
Sbjct: 190 HNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEIAKIYESGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  +E       ++V++ +P+Q + + +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 250 AVYEMENG-----EVVISALPHQASSSKILEQIAAQMQAKKLPMVTDLRDESDHENPVRL 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           + + R    DV  ++  L+  T L+  + VN+  + L+G +P+   L  +L  ++ FR E
Sbjct: 305 VLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDG-RPKVKGLKDMLAEWLVFRTE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L  L IA  N+DEV+ IIRF   P+    ELM R       
Sbjct: 364 TVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKA---ELMAR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    I+ E + L  E  + 
Sbjct: 414 -------------------FGLSDRQAEAILELKLRHLAKLEEMKIKAEQSELEEERNKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEG-LLDMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+EL    +     RR+  +V G    + +++ +  E + V +S  
Sbjct: 455 EQILGSERRLKTLIKKELEKDAETYGDDRRSPLVVRGESRALTEQELLPTEPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V+        A     K   G       F+      S   SV F  S G  +      
Sbjct: 515 GWVRCAKGHDIDAGALSYKAGDG-------FLCAAQGRSNQQSV-FIDSSGRAFSTDTHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +    +L  GE +  ++   E        + + A+  G       +D 
Sbjct: 567 LP--SARSQGEPITTRFNLAPGETMEHVLLGEEQH------HYLLASDAGYGFVCSFADM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           I  N++GK  + L S  + L+     ++ +  IL  T  G+ + F + A+   A      
Sbjct: 619 ISRNKAGKALLSLPSGAKALAPRRVDKDANPSILAITNEGRMLVFGLDALPQLAKGKGNK 678

Query: 724 VRGISLAKGDQVISMAIVLH 743
           + GI   +      + I LH
Sbjct: 679 IIGIPSERAKNREELLIHLH 698


>gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1]
          Length = 745

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 234/696 (33%), Positives = 380/696 (54%), Gaps = 57/696 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE 
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP H
Sbjct: 124 NMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R 
Sbjct: 184 NLHEVVKVCIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVV 311
             H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+V
Sbjct: 244 TYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIV 301

Query: 312 IELKRGA-SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEV 368
           IELK+   + D I++ L+  T L++ + V  NM+ +NG KPE   L  IL  +++ R+ V
Sbjct: 302 IELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGING-KPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R        
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 410 ------------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLG 546
           + L++   L  ++  EL +        RR+ +V+      ++  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++      + A       R+G     + ++T     ST   +L  ++ G  Y      L
Sbjct: 512 WIRAA--KGHHADPAEMNYRTG-----DAYLTHALGKSTERLILVDNT-GRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++  
Sbjct: 564 P--SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
              +SGK ++ L   D +L      Q++D L+   L
Sbjct: 619 TAQKSGKSSINL--ADGVLLPIVVMQDDDSLVAVSL 652


>gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida U112]
 gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112]
 gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 742

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 251/792 (31%), Positives = 410/792 (51%), Gaps = 108/792 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI-EL 314
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               +   I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + RR
Sbjct: 307 TTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R            
Sbjct: 366 LQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 411 --------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++  
Sbjct: 457 SEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKV 603
                     R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y   V
Sbjct: 515 ----------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSMYV 561

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES----SWNNL--YVVFATKHGNV 657
            +L    P ARG           GE ITT +P  + +     ++ N   Y + A++ G  
Sbjct: 562 DKL----PSARG----------YGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                 D I    +GK    +   D++       Q++ +L  +  G+ +      IR FA
Sbjct: 608 FVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFA 658

Query: 718 G----RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                +   G   I L K D++  + +          R      ++A +R I  D++ I 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELF---------RANQELTLNAGKRFIRIDSKNIE 709

Query: 774 SLKNDSSVEGNI 785
           +  +D    G +
Sbjct: 710 TYYSDKPSGGGV 721


>gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  347 bits (890), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 211/544 (38%), Positives = 307/544 (56%), Gaps = 32/544 (5%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           MG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  
Sbjct: 1   MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L+ L ++ VDFR NYDG+  EP VL A++PN+L NG  GIAVGMATNIP HN+ E+VD 
Sbjct: 61  MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           C+ +I  PD   D L++ + GPDFPTG +I+     I NAY TG+G   +R     E   
Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGAS 319
               QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+RDES     R++IE + +   
Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDES-ADDIRLIIEPRSKNVD 239

Query: 320 ADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +V++  LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R EV+ RR+ + + 
Sbjct: 240 PEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRME 299

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R  VL G  +A  NLD V+ IIR+  +P++A   LM   W     KD +  +D++S
Sbjct: 300 KIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSA---LMAEDWG----KDHVRAMDEAS 352

Query: 439 YTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           Y   +  T   LSEVQ  AIL +RL  L  L   ++  E ++L  E     D+L +    
Sbjct: 353 YVPPAPSTENALSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQ 412

Query: 498 LGIIKQELLSVKDELDTP----------RRTRIVEG--LLDMEDEDCIVREDMVVTVSHL 545
              I  +L   K +              RRT   E   + ++  E  I RE + V  S +
Sbjct: 413 WDTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPLEAMIDREPITVVCSQM 472

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++ +   +   +         +  +D D    +F   T   +L F S G  Y      
Sbjct: 473 GWIRAMTGHIDLNRE--------LKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAST 524

Query: 606 LPIG 609
           LP G
Sbjct: 525 LPGG 528


>gi|12597946|gb|AAB67040.2| gyrase A subunit [Pseudomonas stutzeri]
          Length = 275

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 166/273 (60%), Positives = 207/273 (75%), Gaps = 1/273 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMARLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+ +I NPDI +D LM  I GPDFPT ++I  R GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLVLIANPDISIDELMTHIPGPDFPTASIINSRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLE 282
           R  S IE       EQIV+TE+PYQ+NKA ++E
Sbjct: 243 RARSIIEDIDKVGAEQIVITELPYQLNKARLIE 275


>gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1]
          Length = 742

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 251/792 (31%), Positives = 411/792 (51%), Gaps = 108/792 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI-EL 314
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
              ++   I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + RR
Sbjct: 307 TTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R            
Sbjct: 366 LQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 411 --------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++  
Sbjct: 457 SEVKFRNLMKKEFKQILIDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKV 603
                     R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y   V
Sbjct: 515 ----------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSMYV 561

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES----SWNNL--YVVFATKHGNV 657
            +L    P ARG           GE ITT +P  + +     ++ N   Y + A++ G  
Sbjct: 562 DKL----PSARG----------YGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                 D I    +GK    +   D++       Q++ +L  +  G+ +      IR FA
Sbjct: 608 FVIPAEDLITNKVTGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFA 658

Query: 718 G----RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                +   G   I L K D++  + +          R      ++A +R I  D++ I 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELF---------RANQELTLNAGKRFIRIDSKNIE 709

Query: 774 SLKNDSSVEGNI 785
           +  +D    G +
Sbjct: 710 TYYSDKPSGGGV 721


>gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
 gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
          Length = 771

 Score =  347 bits (889), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 227/692 (32%), Positives = 368/692 (53%), Gaps = 60/692 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P++ DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 22  SVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAKAKKSARTVG 81

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE ++  
Sbjct: 82  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTEAKMSA 140

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ LL +LG+ TVD++ N+DG+  EP  L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 141 YANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILLNGTTGIAVGMATDIPPHNLNE 200

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV   + ++ NP++ +  L + I  PD PT A +I  +  ++  Y TGRGS  +R   HI
Sbjct: 201 VVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAIYETGRGSYKMRATFHI 260

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELK 315
           +    ++  +++  +PYQV+   + E+IA+L+ +K++  I D+ DESD +   R+V+ELK
Sbjct: 261 DPK--EKNLVIINALPYQVSGNKIQEQIAKLMTDKKLPWIVDIHDESDHENACRIVLELK 318

Query: 316 RGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
                DV  +++ L+  T L+S + V  NM+ LNG KP+   L  IL+ ++  R  VV R
Sbjct: 319 -STRVDVQRVMSHLFASTDLESNYRVNMNMIGLNG-KPQVKNLKEILEEWLVCRRSVVTR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +Y L+K   R H+L GL IA  N+DEV+RIIR   +P+ +   LMQ            
Sbjct: 377 RLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLS---LMQ------------ 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                  Y         L+E+Q  AIL++RL +L  L   ++R E + L  E     + L
Sbjct: 422 ------DYD--------LTEIQANAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYL 467

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            +   L  ++  EL +   E    R +++   E    +++ D +  E +   +S  G++ 
Sbjct: 468 DNPDSLTNLMIDELTADMKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKAGWI- 526

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +      +G+  R  D          +  +    S G  Y      L   
Sbjct: 527 -------RAAKGHDVDAAGMAYRSGDSYQAHVRAKANEKIYVLDSTGRSYSIDAHSL--A 577

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G  L ++L    G     ++      +  N+  ++ A+  G    N + +     
Sbjct: 578 SARGQGDPLTSVLKPPAGATFEQLL------TGDNDQRIILASSQGYGFINTIGNLDSNQ 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           ++GK  + L +   +L +     + +++++++
Sbjct: 632 KAGKNIINLAADSRLLPIARIDAQTEVIVSSE 663


>gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
 gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
          Length = 742

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 251/792 (31%), Positives = 410/792 (51%), Gaps = 108/792 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI-EL 314
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               +   I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + RR
Sbjct: 307 TTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R            
Sbjct: 366 LQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 411 --------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++  
Sbjct: 457 SEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKV 603
                     R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y   V
Sbjct: 515 ----------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSMYV 561

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES----SWNNL--YVVFATKHGNV 657
            +L    P ARG           GE ITT +P  + +     ++ N   Y + A++ G  
Sbjct: 562 DKL----PSARG----------YGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                 D I    +GK    +   D++       Q++ +L  +  G+ +      IR FA
Sbjct: 608 FVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFA 658

Query: 718 G----RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                +   G   I L K D++  + +          R      ++A +R I  D++ I 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELF---------RANQELTLNAGKRFIRIDSKNIE 709

Query: 774 SLKNDSSVEGNI 785
           +  +D    G +
Sbjct: 710 TYYSDKPSGGGV 721


>gi|284803502|emb|CBJ16551.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 262

 Score =  346 bits (888), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 160/261 (61%), Positives = 207/261 (79%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ 
Sbjct: 1   DGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNY 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG+ +EPVV
Sbjct: 61  RYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           + +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME I GPDFP
Sbjct: 121 MPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFP 180

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 181 TAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIAD 240

Query: 287 LVREKRIVDIADLRDESDRQG 307
           LVR+K+I  I DLRDESDR G
Sbjct: 241 LVRDKKIEGITDLRDESDRNG 261


>gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549]
          Length = 742

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 251/792 (31%), Positives = 410/792 (51%), Gaps = 108/792 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI-EL 314
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               +   I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + RR
Sbjct: 307 TTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R            
Sbjct: 366 LQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 411 --------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++  
Sbjct: 457 SEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKV 603
                     R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y   V
Sbjct: 515 ----------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSMYV 561

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES----SWNNL--YVVFATKHGNV 657
            +L    P ARG           GE ITT +P  + +     ++ N   Y + A++ G  
Sbjct: 562 DKL----PSARG----------YGEHITTYIPLDKKDQIISIAFVNAAGYFLIASESGKA 607

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                 D I    +GK    +   D++       Q++ +L  +  G+ +      IR FA
Sbjct: 608 FVIPAEDLITNKITGK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFA 658

Query: 718 G----RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                +   G   I L K D++  + +          R      ++A +R I  D++ I 
Sbjct: 659 SFALLKKGKGKSIIRLDKKDKLKFIELF---------RANQELTLNAGKRFIRIDSKNIE 709

Query: 774 SLKNDSSVEGNI 785
           +  +D    G +
Sbjct: 710 TYYSDKPSGGGV 721


>gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1]
 gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1]
          Length = 738

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 244/731 (33%), Positives = 379/731 (51%), Gaps = 64/731 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ TVD++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP+   + L E I  PD PT A +I  +  +     TGRGS   R V HI
Sbjct: 192 VVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRGSYRARAVYHI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELK 315
                D+ +IV+TE+PYQV+ + ++ +IA+ ++ K++  ++D+RDESD R   R+VI L+
Sbjct: 252 -----DKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHRNPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A  +++ L+  T L++ + V  NM+  +G +P+  ++  IL  ++  R+  V RR
Sbjct: 307 SNRVDAAAVMSHLFATTDLETSYRVNLNMIGSDG-RPQVKSIRRILLEWIEIRKTTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LNK   R H+L GL IA  ++D V++IIR    P+     LMQ             
Sbjct: 366 LQYHLNKIEKRLHILAGLLIAYLDIDTVIKIIREEDQPKPV---LMQH------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR E   L        + L 
Sbjct: 411 --------------FNIDEIQAEAILELKLRHLAKLEEMEIRREQEELEARAAVIREQLG 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV  E  + + ++D +  E + V +S  G+++ 
Sbjct: 457 NPESLKNLIINELKEDAKKFGDDRRSPIVQREEAVQIREQDLLPAETVTVVLSEAGWIRS 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                     +G      +  R  D      I  ++  V      G  Y   +  LP  S
Sbjct: 517 A---------KGEVDAENLNYRAGDQYQSHAIGKSNQRVYVLDETGRSYALSIGNLP--S 565

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L + LS   G  ++ I  +  DE S   L  V    +G   + K  D     +
Sbjct: 566 ARGLGEPLSSKLSPANG--VSFIQVYINDEES--ELIAVSDAGYGFKTQTKQLDTNA--K 619

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GK  + +    + L + T      + + +  G+ +   +S + +       G + I L 
Sbjct: 620 AGKAFLSVPEGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPIL--NKGKGNKLIQLD 677

Query: 731 KGDQVISMAIV 741
             DQ++SM ++
Sbjct: 678 DKDQILSMTLL 688


>gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
 gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
          Length = 751

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 232/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 17  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 77  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 135

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 136 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 195

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 196 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEIRTLYRTGQGSLRMRAT--YQ 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 254 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 310

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 311 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 369

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 370 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 413

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 414 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 461 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 521 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHTLP 568

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     ++   +D+        + A+  G      L +   
Sbjct: 569 --SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASDAGYGFLTSLVNLHV 620

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 621 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 668


>gi|332141550|ref|YP_004427288.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551572|gb|AEA98290.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 277

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/273 (60%), Positives = 207/273 (75%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK 
Sbjct: 3   DNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GCVA+I +P I +D LM  I GPDFPT A+I GR GI++AY TGRG I +
Sbjct: 183 PPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           R  + IE  +  +E IVV EIPYQVNKA    K
Sbjct: 243 RAKAEIETDANGKETIVVNEIPYQVNKAPSYRK 275


>gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 739

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 247/734 (33%), Positives = 387/734 (52%), Gaps = 69/734 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP+   + L E I  PD PT A +I     +     TGRGS  +R +  +
Sbjct: 192 VVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSIYSV 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ +  K++  +AD+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRVDAETVMSHLFATTDLESSYRVNLNMIGADG-RPQVKSIRRILLEWIEIRKQTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L K   R H+L GL IA  ++D V+RIIR    P+     LMQ             
Sbjct: 366 LQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV---LMQH------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                    G D      E+Q  AILEL+L  L  L   +IR E   L  +     + L+
Sbjct: 411 --------FGID------EIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + + ++D +  E + V +S  G+V  
Sbjct: 457 NPESLKNLIITELKEDAKKFGDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +      + +  R  D      +  T+  V F    G  Y      LPI S
Sbjct: 515 ------RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYA-----LPISS 563

Query: 611 -PQAR--GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            P AR  G+ L + LS   G  ++ I    ED++  N L V  A+ +G   + + +    
Sbjct: 564 LPSARGLGEPLSSKLSPASG--VSFIQVLVEDDA--NELLV--ASSNGYGFKTQATQLDT 617

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++GK  + +  + + L +    Q   + + +  G+ +   ++ + V       G + I
Sbjct: 618 NAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL--NKGKGNKLI 675

Query: 728 SLAKGDQVISMAIV 741
            L + +Q++SM  +
Sbjct: 676 QLDEKEQILSMTTL 689


>gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
 gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
          Length = 739

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 247/734 (33%), Positives = 387/734 (52%), Gaps = 69/734 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP+   + L E I  PD PT A +I     +     TGRGS  +R +  +
Sbjct: 192 VVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSIYTV 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ +  K++  +AD+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRVDAETVMSHLFATTDLESSYRVNLNMIGADG-RPQVKSIRRILLEWIEIRKQTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L K   R H+L GL IA  ++D V+RIIR    P+     LMQ             
Sbjct: 366 LQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV---LMQH------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                    G D      E+Q  AILEL+L  L  L   +IR E   L  +     + L+
Sbjct: 411 --------FGID------EIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + + ++D +  E + V +S  G+V  
Sbjct: 457 NPESLKSLIINELKEDAKKFGDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +      + +  R  D      +  T+  V F    G  Y      LPI S
Sbjct: 515 ------RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYA-----LPISS 563

Query: 611 -PQAR--GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            P AR  G+ L + LS   G  ++ I    ED++  N L V  A+ +G   + + +    
Sbjct: 564 LPSARGLGEPLSSKLSPASG--VSFIQVLVEDDA--NELLV--ASSNGYGFKTQATQLDT 617

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++GK  + +  + + L +    Q   + + +  G+ +   ++ + V       G + I
Sbjct: 618 NAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL--NKGKGNKLI 675

Query: 728 SLAKGDQVISMAIV 741
            L + +Q++SM  +
Sbjct: 676 QLDEKEQILSMTTL 689


>gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23]
 gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23]
          Length = 749

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 365/706 (51%), Gaps = 67/706 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++ +    K  K 
Sbjct: 11  GFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
            R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  VRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+    + ++DNP+  + AL + IRGPD+PT A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDLQNLYETGNGSVRTR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI--VDIADLRDESDRQGYR 309
              H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +D   +RDESD +   
Sbjct: 250 ATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPV 304

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFR 365
            ++   R    DV  ++  L+  T L+    VN+  + L+G +P+   L  +L  +++FR
Sbjct: 305 RIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDG-RPQVKPLKQLLSEWLSFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR KY L K   R H+L GL IA  NLD+V+ IIR   N +  +  L+ R     
Sbjct: 364 SDTVTRRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIR---NEDEPKPVLIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ QT  IL+ +L +L  L    IR+E ++L  E  
Sbjct: 416 ---------------------FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERD 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           E   IL S  +L  +IK ELL+        RR  +V  +    +++ + +  E M V +S
Sbjct: 455 EINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYKEK 602
             G++        RA +      SG+  R+ D  +  +   STH  V F  S G  Y   
Sbjct: 515 EKGWI--------RAAKGHDVDPSGMFYREGDRLLAAVRTRSTH-QVSFLDSEGRAYSTL 565

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP  S +  G+ L    S   G     +       S+ N+   V A+ HG     + 
Sbjct: 566 VHTLP--SARGNGEPLTGRFSPAPGASFQAMA------SADNDKLFVLASSHGYGFITRF 617

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCV 706
            +    N++GK  + L    +++ +   T  Q + I+  T  G  +
Sbjct: 618 ENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVTSAGNLL 663


>gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
 gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
          Length = 739

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 240/736 (32%), Positives = 389/736 (52%), Gaps = 73/736 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+G+ D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++LG+ T D++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V+ G +A+I NP    + L E I GPD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VIKGTIALIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD     R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
                           + E+Q  AILEL+L  L  L   +IR+E + L  +   I+E L+
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELAAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVVRAEAVQIKEQDLMPAEAVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +        +  R  D      +  T+  + F    G  Y      L
Sbjct: 513 WI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYA-----L 559

Query: 607 PIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           PI S P ARG        L     ++ I  + EDE S     ++ A+  G   + +    
Sbjct: 560 PISSLPSARGLGEPLSSKLAPASGVSFIQVYLEDEES----ELIAASTSGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++ +         G +
Sbjct: 616 DTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNL--NKGKGNK 673

Query: 726 GISLAKGDQVISMAIV 741
            I L   +Q++SM  +
Sbjct: 674 LIQLDAKEQILSMTTL 689


>gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
 gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
          Length = 753

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 233/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 19  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 78

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 79  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 137

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 138 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 198 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT--YQ 255

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 256 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 312

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 313 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 372 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 416 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 463 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 522

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 523 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHTLP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     I+   +D+        + A+  G      L +   
Sbjct: 571 --SARGLGDPLTSRLKPASGAHFVGILMGADDD------LFLLASDAGYGFLTSLVNLHV 622

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 623 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 670


>gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 741

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 353/635 (55%), Gaps = 84/635 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI--- 312
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSA 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +K+      I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + 
Sbjct: 307 TIKKNIKK--IMGHLLVTTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R          
Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL +RL +L  +   +I+ E   L  E +     
Sbjct: 411 ----------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGY 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++
Sbjct: 455 LNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKE 601
                       R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y  
Sbjct: 515 ------------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSM 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            + +L    P ARG           GE ITT +P 
Sbjct: 560 YIDKL----PSARG----------YGEHITTYIPL 580


>gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 751

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 233/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 17  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 77  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 135

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 136 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 195

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 196 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT--YQ 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 254 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 310

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 311 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 369

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 370 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 413

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 414 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 461 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 521 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHTLP 568

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     I+   +D+        + A+  G      L +   
Sbjct: 569 --SARGLGDPLTSRLKPASGAHFVGILMGADDD------LFLLASDAGYGFLTSLVNLHV 620

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 621 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 668


>gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
 gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
          Length = 772

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 260/740 (35%), Positives = 382/740 (51%), Gaps = 80/740 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+PD+ DG KPV RRIL+ M ++ +  + K  K A + G+V+GK 
Sbjct: 28  ERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLAPDAKPRKSAAVVGDVLGKL 87

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ ++YDAL RMAQD+SLR  LI+G GNFGS DGD  AA RYTE RL   A  LL++
Sbjct: 88  HPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYTEARLTPIARLLLEE 147

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +G+ TV+F+ NYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV +   A+
Sbjct: 148 IGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNGASGIAVGLATEIPSHNLNEVAEAAKAL 207

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP I  D LMEI+ GPDFP G  +I     I   Y  GRGS+ +R    IE+ +  + 
Sbjct: 208 IRNPKISHDELMEILPGPDFPGGGQIITAPHAISEIYRNGRGSLKVRARWKIEELARGQW 267

Query: 265 QIVVTEIPYQVNKAAMLEKIAEL------------------VREKRIVDIADLRDESDRQ 306
           Q VVTE+P   +   +LE+I E+                  +R++ +  +  +RDE+ R 
Sbjct: 268 QAVVTELPPGTSAQKVLEEIEEITNPKVRNGKKALSPEQISLRQQFLGMLDAVRDEASRD 327

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V+E K +  +    +  L  +TSL+    VN  M+ ++G +P + +L  ILK ++
Sbjct: 328 APVRLVLEPKSKRINPGEFMQSLLAHTSLECNTPVNLVMIGIDG-RPRQKSLSDILKEWI 386

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V  RT + L +  DR H+L G    + N+D V+RIIR S  P+TA         
Sbjct: 387 EFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLNIDRVIRIIRESDEPKTA--------- 437

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  LI+             T  LSE Q   ILE+RL +L  L +  I  EL  L  
Sbjct: 438 -------LIE-------------TFRLSEKQADDILEIRLRQLARLEKIRIEQELAELRR 477

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E +   D+L + + +  ++ +E+ + + +    RRT ++E       E  I  E + V V
Sbjct: 478 EKETLHDLLDNPASMKRLVIREIEADRKKFGDIRRT-LIEEAEKAVVEPKIADEPVTVIV 536

Query: 543 SHLGYVKRVPLSVYRAQRRG-GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           S  G+V+         QR G G   SG+  +  D +   +   +   +L FSS G +Y  
Sbjct: 537 SQNGWVR---------QRTGHGLTLSGLSFKSGDSLLAAYECRSTDLLLAFSSTGRIYTV 587

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            V  LP G    RG  +        G   T +  F    +   +  V+ +T  G     K
Sbjct: 588 AVHALPGG----RGDGMPITTFAETGIDETIVRYF----AGSPDTTVLISTDSGYGFSAK 639

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVF--A 717
           ++D     R+GK  + L+ +DE L        +D  I   +  G  + F ++ +R     
Sbjct: 640 VADMSSRVRNGKSFISLE-KDETLLPPVAISPDDKWIGALSGNGHLLLFDMTELRALLSG 698

Query: 718 GRNSVGVRGISLAKGDQVIS 737
           GR   GV  + L KGD++++
Sbjct: 699 GR---GVILMGLEKGDKLMA 715


>gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 741

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 353/635 (55%), Gaps = 84/635 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI--- 312
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +K+      I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + 
Sbjct: 307 TIKKNIKK--IMGHLLVTTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R          
Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL +RL +L  +   +I+ E   L  E +     
Sbjct: 411 ----------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGY 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++
Sbjct: 455 LNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKE 601
                       R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y  
Sbjct: 515 ------------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSM 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            + +L    P ARG           GE ITT +P 
Sbjct: 560 YIDKL----PSARG----------YGEHITTYIPL 580


>gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
 gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
          Length = 749

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 210/558 (37%), Positives = 326/558 (58%), Gaps = 55/558 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +I+   E +E    ++S+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++
Sbjct: 3   NIVKPPESDE----TISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSEL 58

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D D
Sbjct: 59  GLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSPD-D 117

Query: 124 PP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           P   AA RYTE RL   +  LL +LG+ TV++ PN+DG+  EP VL A+ PN+L+NG  G
Sbjct: 118 PKSFAAMRYTESRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNGTTG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNA 240
           IAVGMAT+IP HNL EVV  C+ ++ NP   +  LME +  PD PT A +I     I+  
Sbjct: 178 IAVGMATDIPPHNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDIQTM 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R +   E   GD   IVVT +P+QV+ A +LE+IA  ++ K++  +ADLR
Sbjct: 238 YETGRGSLRMRCIWGQE--DGD---IVVTSLPHQVSGAKILEQIAAQMQAKKLPMVADLR 292

Query: 301 DESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIG 356
           DESD +    ++ + R    DV  +++ L+  T L+  +  ++NM+ ++G  P    L  
Sbjct: 293 DESDHENPTRLVIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGL-PAVKPLNV 351

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +++FR   V RR +Y L+K   R H+L G   A  N+DEV+ IIR    P   ++ 
Sbjct: 352 ILTEWLSFRMVTVRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKP---KQV 408

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R                            ++++Q  AILEL+L ++  L    IR E
Sbjct: 409 LMDR--------------------------FGVTDIQAEAILELKLRQIAKLEEIKIRGE 442

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-----EGLLDMEDED 531
            + L  E +    IL+S ++L  ++K+EL ++ ++    RR+ IV     + L +M   D
Sbjct: 443 QDELAKEGEWLEGILASATKLKNLVKKELQAIAEKYGNDRRSPIVVRGEAQALSEM---D 499

Query: 532 CIVREDMVVTVSHLGYVK 549
            +  + + V +S  G+++
Sbjct: 500 LLTSDPITVVLSEKGWIR 517


>gi|328957566|ref|YP_004374952.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673890|gb|AEB29936.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 325

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/324 (50%), Positives = 230/324 (70%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  G V+G 
Sbjct: 1   MGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTSDKGFRKSAKTVGNVIGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ R++Q+W  R +LIE  GN GS+DGDPPAA RYTE RL K +  L+ 
Sbjct: 61  YHPHGDSSVYEAMVRLSQNWKQREVLIEMHGNNGSMDGDPPAAMRYTEARLSKISAELVR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF  N+D + +EP V  A YPN+LVNG  GI+ G AT+IP HNLGEV+D  V 
Sbjct: 121 DIDKETVDFVLNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPPHNLGEVIDATVH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+PD  +  LM+ I+GPDFPTGA++ G  GIK AY TG+G I++R  + IE+  G +E
Sbjct: 181 LIDHPDASVSDLMQHIKGPDFPTGAILQGVAGIKQAYETGKGKIIVRSKTRIEEVRGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+ EIPY+VNKA ++ K+ E+   K++  IA++RDESDR G ++V+ELK+ A+A  IL
Sbjct: 241 QIVINEIPYEVNKAVLVRKMDEIRLNKKVDGIAEVRDESDRNGLQIVVELKKEANAKGIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYK 348
           N L + T LQ  ++ NMVA++  K
Sbjct: 301 NYLLKNTDLQVAYNFNMVAIDKKK 324


>gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 939

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 234/686 (34%), Positives = 364/686 (53%), Gaps = 92/686 (13%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           +YL YAI+V+ GRA+PD+ DG+KPV RRIL+ M ++G+  + K VK AR+ GEV+GKYHP
Sbjct: 179 AYLEYAISVVKGRALPDVCDGMKPVQRRILYAMKRLGLNPDVKTVKSARVVGEVLGKYHP 238

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A YDA+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL K A  LL +L 
Sbjct: 239 HGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSADGDGAAAMRYTEVRLSKYADLLLGELD 298

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K TV F PNYDG+ +EPV+L AR P +L+NG  GIAVGMAT IP+HNL EV +  + VI 
Sbjct: 299 KGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSSGIAVGMATEIPSHNLTEVGEAAIEVIR 358

Query: 208 NPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           NP+I  D L+EI++GPDFP GA VI   + IKN Y +G G++ +R   H E+ S  + Q+
Sbjct: 359 NPEITTDELLEIVKGPDFPGGAQVISSASDIKNVYRSGYGNLQVRATYHFEELSRGQWQL 418

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKR-----------------IVDI-ADLRDESDRQG- 307
           V   +PY+V+   ++ ++  L   K                  I+++ + +RDES  +  
Sbjct: 419 VFDSVPYKVSVMKVMSELEALTNPKAPQGKKSLTAKQQQDKQLIMNVMSGMRDESSAEAP 478

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTLIGILKAFVAF 364
            R+VI+ K +    + +++ +   TSL++    N+V   ++G KP +  L  IL  +V+F
Sbjct: 479 VRLVIDPKSKSIDREELVSTILSKTSLETSCKFNLVVIGIDG-KPRQKGLKDILSEWVSF 537

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V  R++  LN+A  R H L G  I + +++EV+RIIR + +P   ++EL+      
Sbjct: 538 RLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIEEVIRIIRGADDP---KKELITH---- 590

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q   ILE++L +L  L    +R EL  L  E 
Sbjct: 591 ----------------------FGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEA 628

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +    +L+   +L   + +E+    D     RRT ++E          ++ E + V VS 
Sbjct: 629 ERLRGLLTDEKKLRREVTKEIRQDIDTYGDERRT-LIEEAKGASIAKQVIDEPVTVIVSE 687

Query: 545 LGYVKRVPLSVYRAQ----RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+++      + A+    + G K R  +  R    V +L+I+S                
Sbjct: 688 KGFLRSRQGHGFDARAMNFKLGDKYRCSMECRS---VDNLYILSNTG------------- 731

Query: 601 EKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWN------NLYVVFATK 653
            +++ +P+ S P ARG          +G  ++  + F + +  ++      +  ++F + 
Sbjct: 732 -RIYSIPVSSLPSARG----------EGTHVSAFVQFQDGDVPFDYICGASDTVLLFTSD 780

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD 679
                  K+SD     R GK    LD
Sbjct: 781 AAMGFFCKMSDLAVRQRGGKSFFILD 806


>gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
 gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
          Length = 739

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 242/738 (32%), Positives = 391/738 (52%), Gaps = 77/738 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI+F M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+G+ D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++LG+ T D++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V+ G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD     R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P+    E  +             
Sbjct: 366 LEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFK------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECL- 488
                           + E+Q  AILEL+L  L  L   +IR E + L  +   I+E L 
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRQEQDELAAKAAIIREQLG 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
           +  S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIKEQDLVPAETVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +        +  R  D      +  T+  + F    G  Y      L
Sbjct: 513 WI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYA-----L 559

Query: 607 PIGS-PQAR--GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           PI S P AR  G+ L + L+   G  ++ I  + EDE+S     ++ A+  G   + +  
Sbjct: 560 PISSLPSARGLGEPLSSKLAPASG--VSFIQVYLEDEAS----ELIAASTSGYGFKTQAK 613

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 ++GK  + +  + + L + +      + + +  G+ +   ++ +         G
Sbjct: 614 QLDTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNL--NKGKG 671

Query: 724 VRGISLAKGDQVISMAIV 741
            + I L   +Q++SM  +
Sbjct: 672 NKLIQLEAKEQILSMTTL 689


>gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 753

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 232/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 19  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 78

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 79  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 137

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 138 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 198 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT--YQ 255

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 256 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 312

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 313 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 372 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 416 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 463 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 522

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 523 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHTLP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     ++   +D+        + A+  G      L +   
Sbjct: 571 --SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASDAGYGFLTSLVNLHV 622

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 623 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 670


>gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12]
 gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12]
          Length = 749

 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 236/706 (33%), Positives = 366/706 (51%), Gaps = 67/706 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++ +    K  K 
Sbjct: 11  GFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
            R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  VRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+    + ++DNP+  + AL + IRGPD+PT A +I   + ++N Y TG GS+  R
Sbjct: 190 HNLNEITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI--VDIADLRDESDRQGYR 309
              H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +D   +RDESD +   
Sbjct: 250 ATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPV 304

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFR 365
            ++   R    DV  ++  L+  T L+    VN+  + L+G +P+   L  +L  +++FR
Sbjct: 305 RIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDG-RPQVKPLKQLLSEWLSFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR KY L K  +R H+L GL I   NLD+V+ IIR   N +  +  L+ R     
Sbjct: 364 SDTVTRRLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIR---NEDEPKPVLIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ QT  IL+ +L +L  L    IR+E ++L  E  
Sbjct: 416 ---------------------FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERD 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           E   IL S  +L  +IK ELL+        RR  +V  +    +++ + +  E M V +S
Sbjct: 455 EINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYKEK 602
             G++        RA +      SG+  R+ D  +  +   STH  V F  S G  Y   
Sbjct: 515 EKGWI--------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTH-QVSFLDSEGRAYSTL 565

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP  S +  G+ L    S   G     +       S+ N+   V A+ HG     + 
Sbjct: 566 VHTLP--SARGNGEPLTGRFSPAPGASFQAMA------SADNDKLFVLASSHGYGFITRF 617

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCV 706
            +    N++GK  + L    +++ +   T  Q + I+  T  G  +
Sbjct: 618 ENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLL 663


>gi|156084089|ref|XP_001609528.1| DNA gyrase A subunit [Babesia bovis T2Bo]
 gi|154796779|gb|EDO05960.1| DNA gyrase A subunit, putative [Babesia bovis]
          Length = 1051

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 300/529 (56%), Gaps = 60/529 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + + DE+  S++ YA+++ILGRA+PD RDGLK VHRRIL+ M  M +  +  Y KCA
Sbjct: 98  VQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRKCA 157

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G+V+GKYHPH + ++YDAL R++Q + +R+ L++G GNFGS D DPPAA RYTECRL
Sbjct: 158 KVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRYTECRL 216

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +   LL ++GK+TVD  PN+D +  EP VL ++ P +L+NG  GIAVG+ATNIP HN
Sbjct: 217 SPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPPHN 276

Query: 195 LGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
             E++     +  N  ++D + L+ I+RGPDFPTG  ++     ++  Y TG+GSI+++ 
Sbjct: 277 PEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIMLQA 336

Query: 253 --------------------------VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
                                      SH+  TSG R  I+V E+PY V  + ++  I++
Sbjct: 337 KYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAISK 396

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADV----ILNQLYRYTSLQSLFSVNMV 342
            V    +  I+DLRDESDR G R+VIELK+  +  +    I+ +L + + L S F  N +
Sbjct: 397 AVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCNFI 456

Query: 343 ALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           AL+  G KP R +L   LK ++ FR + V +R +    +A++R +++ G AIA   +D++
Sbjct: 457 ALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKIDDI 516

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           V ++R S +   A R L ++ +                          L+  Q  A+L +
Sbjct: 517 VHMVRNSSSSAEAMRMLSEKRYGG------------------------LNAEQASAVLRM 552

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
            L++L+ + RD I  E   L   IK    IL   S +  +I  EL  ++
Sbjct: 553 SLSQLSRIERDKIDLEEKELSESIKRYNHILGDESHIYSLIYSELEHIR 601


>gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301]
 gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301]
          Length = 761

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 240/743 (32%), Positives = 383/743 (51%), Gaps = 82/743 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   ++ ++ EE     +V I +  + +YL YA++V+ GRA+P + DG KPV RRILF M
Sbjct: 1   MDTSMLENNNEE----NAVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G V+G YHPHG+++ Y+A  R+AQD++LR  LI+GQGNFGS 
Sbjct: 57  KEMGLIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF+ NYDG+FQEPV+L AR P +L+NG  
Sbjct: 117 DGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT +  HN+ E+ +  + V+DNPD      M+ + GPDFP G  ++ +T  I +
Sbjct: 177 GIAVGMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADILS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-----REKRIV 294
            Y TGRGS+ +R    +E  +  + +I++ E+P+ V+   + ++I  +      ++K+ +
Sbjct: 237 TYETGRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKTI 296

Query: 295 D------------IADLRDESDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNM 341
           D            + D      ++  R++IE K    S+D ++  L  +TS++    VNM
Sbjct: 297 DQDQLLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNM 356

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  +I ILK ++AFR  VV RR ++ L+K   R H+L G  IA  ++DEV
Sbjct: 357 VMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEV 416

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +R+IR S  P+T                DLI                 LSE+Q   ILE+
Sbjct: 417 IRVIRNSDEPKT----------------DLI-------------AAFQLSEIQAEDILEI 447

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E     +IL S ++L  +  +E+    ++    RRT I
Sbjct: 448 RLRQLARLEGFKIEKELKDLREEADGLQNILGSDNKLRKLTAKEIKQDAEKYGDNRRTLI 507

Query: 521 -----VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                V+G      +  +V E + + +S  G++        RA++  G  R  +V +  D
Sbjct: 508 EPVERVQG----GQKAFVVDEPVTILISKNGWI--------RARQGHGVERESIVWKSGD 555

Query: 576 FVTDLFIVSTHT--SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
              +  ++ T T   ++   + G  Y      +P G  +  G  L +I+ +  G ++   
Sbjct: 556 --GEFAVIETRTVLPIVLLDTNGRCYAFDASTVPGG--KGDGIPLSSIIEVQNGAKLAHA 611

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   +D+        +FAT +       L   +   ++GK  MK +    IL      + 
Sbjct: 612 LSGKDDDR------YLFATSNSYGFVAPLKGLVARPKAGKAFMKPEDGALILPPIKLDER 665

Query: 694 NDILLTTKLGQCVRFPISAIRVF 716
             + +T+   + + FPIS +  +
Sbjct: 666 THVAVTSSENKFLVFPISEVNEY 688


>gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 812

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 244/642 (38%), Positives = 344/642 (53%), Gaps = 71/642 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK-------KYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ +         K VK AR+ 
Sbjct: 35  QRAYLEYALSVVKGRALPDVCDGLKPVQRRILYSMGRMGLGFGGANGNAGAKPVKSARVV 94

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG+ + YDAL RMAQD+S R  L++GQGNFGS DGD  AA RYTE RL K 
Sbjct: 95  GDVLGRFHPHGDQSAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEARLAKI 154

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++ + TVDF+PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 155 TTLLLDEIDQGTVDFQPNYDGSTEEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLREV 214

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIE 257
            D CVA+I N  +  D L  +I GPDFP G  +I   + I +AY +GRGS+ +R    IE
Sbjct: 215 ADACVALIKNDKLSDDELFTLIPGPDFPGGGQIISSASDIADAYRSGRGSLKVRARWKIE 274

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
             +  + Q+VVTE+P  V+   +LE+I EL   K                  I+ + D +
Sbjct: 275 DLARGQWQLVVTELPPGVSSQRVLEEIEELTNPKVKAGKKALSQEQTQLKASILSVLDVV 334

Query: 300 RDESDRQGY-RVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLI 355
           RDES++    R+V E K R      ++  L  +TSL++   +N  MV L+G KP + +L 
Sbjct: 335 RDESNKDALVRLVFEPKSRTVEQQELITALLAHTSLETSSPINLTMVGLDG-KPVQKSLR 393

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VAFR   + RR+++ L K  DR H+L G    + N+DEV+ IIR S  P+ A  
Sbjct: 394 QMLVEWVAFRASTIERRSRHRLGKVLDRIHILEGRQTVLLNIDEVIAIIRNSDEPKAA-- 451

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LS+ Q   ILE+RL +L  L    I  
Sbjct: 452 -LIAR--------------------------FNLSDRQAEDILEIRLRQLARLEAIKIEQ 484

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL+ L  E  +  +IL S + L  ++ +E+ +        RRT +++       E  +V 
Sbjct: 485 ELSELRTEQGKLEEILGSPAALRRLMVKEIEADAKVFADARRT-LIQAEKKAVAEVKVVD 543

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G+V        RA+   G   S    +  D +   F   T  ++L F S 
Sbjct: 544 EPVTVVVSEKGWV--------RARTGHGHEASTFAFKAGDGLYGTFECRTVDTLLVFGSN 595

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           G +Y   V  LP G  +  G+ +  +L L  G +I      P
Sbjct: 596 GRIYTVPVSALPGG--RGDGQPVTTLLELEGGTQILYYFAGP 635


>gi|257472186|gb|ACV53934.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472188|gb|ACV53935.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472190|gb|ACV53936.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472192|gb|ACV53937.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472196|gb|ACV53939.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472198|gb|ACV53940.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472210|gb|ACV53946.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472212|gb|ACV53947.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472214|gb|ACV53948.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472220|gb|ACV53951.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 161/256 (62%), Positives = 205/256 (80%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 124 TNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIEL+R A+A+V+
Sbjct: 244 MRIVIELRRDANANVL 259


>gi|71893388|ref|YP_278834.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
 gi|71851515|gb|AAZ44123.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
          Length = 846

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 220/707 (31%), Positives = 381/707 (53%), Gaps = 52/707 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           ++ Y+  VI  RAIPD++DGLKPV RRIL+ M Q+G++ +K Y K AR+ G+V+GKYHPH
Sbjct: 21  FIRYSKYVIQQRAIPDVKDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGKYHPH 80

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDAL R+AQ+W +   L+E  GN GS+D DPPAA RYTE RL + +  LL+ + K
Sbjct: 81  GDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISK 140

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + V F PN+D S +EP +L A +PN+L+NG  GIA G AT IP HNLGEV+D  + +I N
Sbjct: 141 NVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDAAILMIKN 200

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I I     I + +G +  I +
Sbjct: 201 PGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIKISSDYKIFEKNG-QNVIEI 259

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  ++IEL++  + D+I+N L 
Sbjct: 260 TSIPFGISKSSLIEEIDDIRFDVKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLL 319

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ  +S N VA+    P+  ++  ++  ++    ++ +    + L K + R  ++ 
Sbjct: 320 QKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIIT 379

Query: 389 GLAIAVANL-DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
           G  + VA++ DEV+++IR S N +               + DLI   +            
Sbjct: 380 GF-LKVADITDEVIKVIRASDNSKVGV------------VNDLIKFFN------------ 414

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             S+ Q  AI  +RL RL+ + +     E  +L   I +   ++ ++      +   L  
Sbjct: 415 -FSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNITKFKKLIENKDEFDKNLINMLTD 473

Query: 508 VKDELDTPRRTR-IVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR------VPLSVYRAQ 559
            K     PR+TR I   +    ++D +V+++     ++  G  K+      +P  + + Q
Sbjct: 474 FKKHHGKPRKTRIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ 533

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
              G           DF     I++     +F ++ G +    V ++P  + +     L 
Sbjct: 534 LPNG-----------DFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLK 582

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKL 678
             L +   ++I ++      ESS    +++F +K    +R  L   ++I +   +   + 
Sbjct: 583 ITLGIPNNQQILSVFFADSFESSQ---FLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRF 639

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              DE++SV    +  +I+L T   + ++  IS I ++  RNS G++
Sbjct: 640 KEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYT-RNSTGIK 685



 Score = 37.7 bits (86), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 798 QFILTVSEKGFGKRTS-SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           QF++ +S+  F KR +     +I  +     +  ++ +  E   L++VF       I+L+
Sbjct: 606 QFLIFISKFSFAKRMNLDQLMKIKQK-----KLQNIFRFKEGDELISVFLEEKLKNIVLI 660

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +   +++ ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 661 TTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum
           HRM2]
 gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2]
          Length = 753

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 246/706 (34%), Positives = 377/706 (53%), Gaps = 72/706 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL Y++ VIL RA+P + DGLKPV RRI++ M Q+G+  + K+ K AR  G+V+GKY
Sbjct: 22  ETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLGLSSSSKHKKSARTVGDVLGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  +AQ +S R  L++GQGN+G+ D DP   AA RYTE RL   A  LL
Sbjct: 82  HPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPD-DPKSFAAMRYTESRLSTYADILL 140

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +L     ++ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    V
Sbjct: 141 SELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIAVGMATDIPPHNLTEVAQALV 200

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            ++D+PD  +D L E I+GPD+PT A +I   + I+  Y TG G I +R   H++   GD
Sbjct: 201 HLLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYKTGNGRIKMRAKFHVD--DGD 258

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIELKRGASAD 321
              IVVT +P+  +   +LE+IA  ++ K++  + DLRDESD  +  R+VI  K   +  
Sbjct: 259 ---IVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDESDHEEPTRLVIIPKARTNTT 315

Query: 322 VILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +++ L+  T L+  +  ++NM+ +NG +PE   L  IL  ++AFR + V +R  + L+K
Sbjct: 316 ALMDHLFATTDLERSYRINMNMIGING-RPEVKPLQVILSEWLAFRIDTVRKRISHRLDK 374

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             DR H+L GL  A  N+DE++ IIR S  P+     LM+R                   
Sbjct: 375 VNDRLHLLEGLLTAFLNIDEIIAIIRNSDEPKPV---LMER------------------- 412

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LS+ Q  AILE++L  L  L    I+ E +SL  E ++   IL+S  RL  
Sbjct: 413 -------FNLSDRQATAILEIKLRNLAKLEEIKIQAEKDSLDSERQQLEKILASDKRLRT 465

Query: 500 IIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +IK+E+ +        RR+ I E        +E+ I  E M V +S  G+          
Sbjct: 466 LIKREIQADAKTHGDLRRSPIFERKEAEAFSEEEVIQIEPMTVILSKNGWA--------- 516

Query: 558 AQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS---VLFFSSLGFVYKEKVWRLPIGSPQA 613
              R  KG    + + +  F  DL + +   S    +FF S G  Y      L   S + 
Sbjct: 517 ---RTAKGHDIDIEKLKFKFGDDLLVTAPTMSNRPAVFFDSSGRSYSIATHTL--ASART 571

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSDFIQINRSG 672
            G+ L   L+L     I +++   +D     +L++++  T  G + R   S+ I  +R+G
Sbjct: 572 MGEPLTGRLTLKPENHIISLVTGEDD-----DLFLLYTNTGFGFITR--FSNLIAKSRTG 624

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLT-TKLGQCVRFPISAIRVF 716
           K  + ++   E ++ E     E D+L   T  G+ + FP+  + + 
Sbjct: 625 KAVLTVEEFSEFMAPEPLKNPETDLLAAVTTSGRLIIFPVREMPIM 670


>gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
 gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
          Length = 770

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 254/754 (33%), Positives = 371/754 (49%), Gaps = 88/754 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+PD+ DG KPV RRILF M +MG+  N K VK AR+ GE++GKY
Sbjct: 21  ERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAMKEMGLAANSKPVKSARVVGEILGKY 80

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+A+ YDA+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 81  HPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 140

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDG+F+EPV L AR P VL+NG  GIAVGMAT IP HNLGEV    VA+
Sbjct: 141 LHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGASGIAVGMATEIPPHNLGEVTAAAVAL 200

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P +    LME    PDF  G  +I     +   Y TG+GSI +R    IEK +  + 
Sbjct: 201 LKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQLYETGKGSIRVRARYEIEKLARGQW 260

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           ++V+TE+P   +   +L +I E                 L  +K ++++ D +RDESD  
Sbjct: 261 RLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQLNQDQLNTKKLMLELIDKVRDESDGE 320

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   T L+     N+V +    +P +  L  IL+ ++ 
Sbjct: 321 HPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPANLVMIGLDNRPAQKNLKTILQEWLD 380

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR ++ L +   R H+L G   A  ++DEV+R+IR +  P   + ELM     
Sbjct: 381 FRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHIDEVIRVIREADEP---KPELM----- 432

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+Q   ILE+RL +L  L    +  EL  L  E
Sbjct: 433 ---------------------AAFGLSEIQAEDILEIRLRQLARLEGFKLEQELADLREE 471

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                ++L+       +I +E+ +   +   PRRT + E     L     D    E + +
Sbjct: 472 EGYLKNLLADEGAKKKLIIKEMQADAKQFGDPRRTLVAEAERAALTHTTAD----EPVTL 527

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G G   S    ++ D +       T   V+   +LG  
Sbjct: 528 ILSRQGWIR----------SRAGHGLDLSATAFKEGDELQQTLETRTVDPVVVLDTLGRS 577

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  L ++L L  G  +  ++     E      + + A   G   
Sbjct: 578 YTIDPAEIPGG--RGDGVPLASLLELQPGASVLAMLAGQPQE------HYLLAGSGGYGF 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI------LLTTKLGQCVRFPISA 712
             KL D +   ++GK  +KL++ + +L  +   Q   I      +L +     + FPI  
Sbjct: 630 IAKLGDLVGRVKAGKEVVKLEAGETLLMPQPVHQSALINPDCRLVLASAEKHLLAFPIGE 689

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHAD 745
           ++V A GR   G++ +SL   D +   A+V   D
Sbjct: 690 LKVMAKGR---GLQLMSLRGNDTLQLTALVSTPD 720


>gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331]
 gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331]
          Length = 751

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 232/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 17  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 77  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 135

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 136 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 195

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 196 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT--YQ 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 254 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 310

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 311 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 369

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 370 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 413

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 414 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 461 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 521 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHILP 568

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     ++   +D+        + A+  G      L +   
Sbjct: 569 --SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASDAGYGFLTSLVNLHV 620

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 621 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 668


>gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 741

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 221/635 (34%), Positives = 353/635 (55%), Gaps = 84/635 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI--- 312
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  ++V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +K+      I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R+  + 
Sbjct: 307 TIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRKHTLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R          
Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL +RL +L  +   +I+ E   L  E +     
Sbjct: 411 ----------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGY 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++
Sbjct: 455 LNSEVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQVLEEKDLMPSEKVTIILSKAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVST---HTSVLFFSSLGFVYKE 601
                       R  KG     +G+  + ED     F+V+T   +  ++FFS LG  Y  
Sbjct: 515 ------------RCAKGENIDPAGLSYKPED---KPFLVTTGNGNIKLVFFSKLGKAYSM 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            + +L    P ARG           GE ITT +P 
Sbjct: 560 YIDKL----PSARG----------YGEHITTYIPL 580


>gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493]
 gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493]
          Length = 753

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 232/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 19  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 78

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 79  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 137

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 138 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 198 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT--YQ 255

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 256 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 312

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 313 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 372 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 416 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 463 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 522

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 523 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHILP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     ++   +D+        + A+  G      L +   
Sbjct: 571 --SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASDAGYGFLTSLVNLHV 622

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 623 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 670


>gi|256376407|ref|YP_003100067.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
 gi|255920710|gb|ACU36221.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
          Length = 1143

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 250/698 (35%), Positives = 356/698 (51%), Gaps = 72/698 (10%)

Query: 82   MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            MGKYHPHG+ AIYDA+ R+AQD+SL   LI+G GNFGS D D PAA RYTE R+  AA  
Sbjct: 406  MGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASRYTEARMSGAAML 464

Query: 142  LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
            L+ +L +DTV+FRPNYDGS  EP VL A +PN+LVNG  GIAVGMATN+  HNLGEVV  
Sbjct: 465  LVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLGEVVAA 524

Query: 202  CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG---VSHIEK 258
               ++ +PD DL+ LME I GPD PTG ++LG   ++ AY TGRG + +R       +E 
Sbjct: 525  ARHLVKHPDADLEKLMEFIPGPDLPTGGMLLGLDEVRKAYETGRGVVRMRATVTTGPLEG 584

Query: 259  TSGDREQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ-GYRVVIELKR 316
            + G R+ I VTE+PY V    ++EKI  E+ + KR+  IAD++D +DR+ G R+VIE K 
Sbjct: 585  SRG-RQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLVIECKV 643

Query: 317  GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            G +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+A R EVV RRT++ 
Sbjct: 644  GVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLAHRYEVVTRRTRFR 703

Query: 377  LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
              K  DR H++ GL  A+ ++D+V+++IR S N + A+  L+                  
Sbjct: 704  RRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVS----------------- 746

Query: 437  SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                     T  LSE Q   IL+  L RLT     ++  E   L  EI E   IL     
Sbjct: 747  ---------TFALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKV 797

Query: 497  LLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCIVREDMVVTVS 543
            L  ++  EL  V  +L   RRT +++             G L++ D+ C       V +S
Sbjct: 798  LRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDPC------QVVLS 851

Query: 544  HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
              G V R       A    G+ RSG      D V      +    VL  +S G  +K  V
Sbjct: 852  ATGLVARTAAESEEAVE--GRKRSG--RAKHDAVAATVHTTARGQVLLVTSRGRAFKTDV 907

Query: 604  WRLPIGSPQARGKALIN-------ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              LP+  PQ  G   ++       ++ L  GER+  I P  E +S      +   TK G 
Sbjct: 908  LPLPV-LPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGETDSPG----LALGTKQGV 962

Query: 657  VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRV 715
            V+       ++ +    I +K  + DE++  +      + L   +     +R+  S +R 
Sbjct: 963  VKVCAPEWPVRSDEFEVIGLK--AGDEVVGAQWLADGQEALVFVSSEASLLRYAASLVRP 1020

Query: 716  FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
               R   G+ GI+L     V+    V   DA++ E + 
Sbjct: 1021 QGLRGG-GMAGITLPGEASVVFFGAVRTDDAEHGEPVV 1057



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 43/63 (68%)

Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
          S+T E+++SYL YA +VI  RA+PD RDGLKPVHRRILF M +        YVK +R+ G
Sbjct: 27 SLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKSSRVVG 86

Query: 80 EVM 82
          +  
Sbjct: 87 DCF 89


>gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
          Length = 753

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 232/708 (32%), Positives = 379/708 (53%), Gaps = 71/708 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 19  LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 78

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL   
Sbjct: 79  VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARLSAY 137

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAVGMAT+IP HNL EV
Sbjct: 138 AQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEV 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
            D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+  Y TG+GS+ +R     +
Sbjct: 198 ADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT--YQ 255

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K +G   +IV+T +P+QV+   ++E+IA  +  K++  ++D+RDESD +    ++   R 
Sbjct: 256 KENG---EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 312

Query: 318 ASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
              ++  ++  L+  T L+  + V  NM+ ++G +P+   LI +LK ++ FR + V +R 
Sbjct: 313 NRINIHELMAHLFVTTDLERSYRVNLNMIGIDG-RPKVKDLISLLKEWLEFRMQTVRKRL 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L    +R H+L G  IA  NLD ++ IIR    P+     LM++             
Sbjct: 372 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV---LMKK------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AILE++L +L  L    IR+E   L  E  E    L+S
Sbjct: 416 -------------FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLAS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           +++L  +I+ EL + K++    R + ++E  +   + +E+ +  E + V +S  G+++  
Sbjct: 463 KTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAA 522

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWRLP 607
               +  +      RSG          D F++     T+   +F  S G  Y      LP
Sbjct: 523 --KGHEVEGETLNYRSG----------DEFLMQAQGRTNELAVFLDSAGKSYALPAHILP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G  L + L    G     ++   +D+        + A+  G      L +   
Sbjct: 571 --SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASDAGYGFLTSLVNLHV 622

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAI 713
            NRSGK  +KL    +++  +    +    L   T  G+ + FPI+ +
Sbjct: 623 KNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAEL 670


>gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
 gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
          Length = 433

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 190/438 (43%), Positives = 281/438 (64%), Gaps = 22/438 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR E
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R     D+
Sbjct: 362 TVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR----FDL 414

Query: 428 KDL-IDLIDDSSYTIGSD 444
            DL  D I D+ Y + ++
Sbjct: 415 TDLQADAILDTKYALRTE 432


>gi|257472200|gb|ACV53941.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 161/256 (62%), Positives = 205/256 (80%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R  L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +AV  NPDI L  L+EII GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 124 TNIPPHQLGEVIDGVLAVSKNPDITLPELVEIIPGPDFPTAGLILGRSGIRKAYETGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIEL+RGA+A+V+
Sbjct: 244 MRIVIELRRGANANVL 259


>gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180]
 gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180]
          Length = 748

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 245/747 (32%), Positives = 380/747 (50%), Gaps = 75/747 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+    + D  + +YL Y++ VIL RA+P + DGLKPV RRIL+ M ++G+    K+ K
Sbjct: 10  EGLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAMSELGLSATAKFKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA RYT
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL +  + T+D++PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 129 ESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNGATGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL EV   C+ ++++PD  L+ L+ II  PDFPT A I+     I   Y TG GS  +
Sbjct: 189 AHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEILKLYRTGNGS--L 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +   +  GD   IV+T +PYQV+ + +LE+IA     K++  I D RDESD +    
Sbjct: 247 RQRARYTREQGD---IVITALPYQVSGSRVLEQIAAQFNAKKLPMIEDFRDESDHEYPTR 303

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFRE 366
           ++ + R    DV  +++ L+  T L+  + V  N++ALNG +P    L  IL  ++ +R 
Sbjct: 304 LVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNG-RPRVMDLREILSEWLIYRT 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR ++ L K  +R H+L GL IA  NLDEV+RI+R    P   R  LM+R      
Sbjct: 363 ETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEP---RPVLMER------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q   +L  RL +L  L    IR E   L  E   
Sbjct: 414 --------------------FGLTEPQADYVLNTRLRQLARLEEMKIRAEQAELAAERDG 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L     L G+++ E+ +  +     RR+ +VE      +++ +    E + V +S 
Sbjct: 454 LQRLLGDERALKGLVRDEIAADAERYGDARRSPLVERAAAAAIDETELTPSEPLTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+V            R  KG     + +  R  D    L  + ++ + +F  S G  Y 
Sbjct: 514 KGWV------------RAAKGHEVDATTLSYRAGDAFLSLARLRSNQTAVFLDSTGRSYA 561

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                 P  S + +G+ L   L    G R  T++     +++     +     +G + R 
Sbjct: 562 LPAHTFP--SARGQGEPLTGRLDPPPGARFVTVL----GDNAETRYLLASDAGYGFIVR- 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA- 717
              + I   + GK  + L     +L        + + +   T  G  + FP++ +   A 
Sbjct: 615 -FDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEGSSVAAVTTAGHLLLFPLAELPEMAR 673

Query: 718 --GRNSVGV-RGISLAKGDQVISMAIV 741
             G   +G+  G + A+G+++I++A+V
Sbjct: 674 GKGNKIIGIPAGRAGAEGERLIAVAVV 700


>gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c]
 gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c]
          Length = 749

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 234/693 (33%), Positives = 358/693 (51%), Gaps = 73/693 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++ +    K  K 
Sbjct: 11  GFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
            R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  VRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+    + ++DNP+  + AL + IRGPD+PT A +I   + ++N Y TG GS+  R
Sbjct: 190 HNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI--VDIADLRDESDRQGYR 309
              H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +D   +RDESD +   
Sbjct: 250 ATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPV 304

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFR 365
            ++   R    DV  ++  L+  T L+    VN+  + L+G +P+   L  +L  +++FR
Sbjct: 305 RIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDG-RPQVKPLKQLLSEWLSFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V  R KY L K   R H+L GL IA  NLD+V+ IIR   N +  +  L+ R     
Sbjct: 364 SDTVTHRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIR---NEDEPKPVLIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ QT  IL+ +L +L  L    IRNE ++L  E  
Sbjct: 416 ---------------------FGLSDAQTEYILDTKLRQLARLEEMAIRNEQDALTKERD 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           E   IL S  +L  +IK ELL+        RR  +V  +    +++ + +  E M V +S
Sbjct: 455 EINVILDSDIQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFV 598
             G++            R  KG     SG+  R+ D  +  +   STH  V F  S G  
Sbjct: 515 EKGWI------------RAAKGHEVDPSGMSYREGDRLLAAVRTRSTH-QVSFLDSEGRA 561

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y   V  LP  S +  G+ L    S   G     +       S+ N+   V A+ HG   
Sbjct: 562 YSTLVHTLP--SARGNGEPLTGRFSPAPGASFQAMA------SADNDKLFVLASSHGYGF 613

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
             +  +    N++GK  + L    +++ +   T
Sbjct: 614 ITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLT 646


>gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
 gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
          Length = 770

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 233/714 (32%), Positives = 367/714 (51%), Gaps = 71/714 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K 
Sbjct: 11  GVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CV ++D P  +L  L+EI+ GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADIAKIYETGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YR 309
            V  +E+      +I++T +P+Q     +LE+IA  +  K++  +ADLRDESD +     
Sbjct: 250 AVYTLEQG-----EIIITALPHQAGSGKILEQIANQMIAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREE 367
           V++        D ++  L+  T LQ  F VN+  + L+G +P+   L  +L  ++ +R  
Sbjct: 305 VIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDG-RPQVKGLKEMLSEWLVYRVG 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L K   R H+L  L IA  N+DEV+ IIR+  +P+             S++
Sbjct: 364 TVTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDPK-------------SEL 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K   +L D                 Q  AIL+L+L  L  L    I  E   L  E  + 
Sbjct: 411 KARFNLTDK----------------QAEAILDLKLRHLAKLEEFKITAEQEELAAERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             IL S  RL  ++K+EL++  +     RR+ IVE      +  ++    E + V +S  
Sbjct: 455 QLILGSERRLKTLVKKELIADGETYGDARRSPIVERSESKALTQQELTPTEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           G+V            R  KG       +  +  D      I  ++ + +F  + G  +  
Sbjct: 515 GWV------------RCAKGHDVDGQALSYKSGDSYLGSAIGKSNQAAVFIDTSGRAFAT 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP  S +++G+ +    ++  GE +  ++   +D+        + A+  G      
Sbjct: 563 DSHTLP--SARSQGEPITTRFNMAPGESMQHVLMGDDDQR------YLMASDAGYGFICS 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAI 713
            SD    N++GK  + L    + L  +    +Q   IL  T  G+ + F + A+
Sbjct: 615 FSDMASRNKAGKALLTLPENAQSLMPKRIDSSQSPSILAITNEGRMLMFELDAL 668


>gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 767

 Score =  343 bits (880), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 374/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EPV L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL++                L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLME-------------AFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    ++ +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLGDENEKRKLMIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLADMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNTGESMTHTAV 716


>gi|54020319|ref|YP_115549.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987492|gb|AAV27693.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
          Length = 846

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 220/707 (31%), Positives = 379/707 (53%), Gaps = 52/707 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M Q+G++ +K Y K AR+ G+V+GKYHPH
Sbjct: 21  FIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGKYHPH 80

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDAL R+AQ+W +   L+E  GN GS+D DPPAA RYTE RL + +  LL+ + K
Sbjct: 81  GDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISK 140

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + V F PN+D S +EP +L A +PN+L+NG  GIA G AT IP HNLGEV+D  + +I N
Sbjct: 141 NVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKN 200

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I I     I + +G +  I +
Sbjct: 201 PGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIKISSDYKIFEKNG-QNVIEI 259

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  ++IEL++  + D+I+N L 
Sbjct: 260 TSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLL 319

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ  +S N VA+    P+  ++  ++  ++    ++ +    + L K + R  ++ 
Sbjct: 320 QKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIIT 379

Query: 389 GLAIAVANL-DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
           G  + VA++ DEV+++IR S N +               + DLI   +            
Sbjct: 380 GF-LKVADITDEVIKVIRASDNSKVGV------------VSDLIKFFN------------ 414

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             S+ Q  AI  +RL RL+ + +     E  +L   I     ++ ++      +   L  
Sbjct: 415 -FSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTD 473

Query: 508 VKDELDTPRRT-RIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR------VPLSVYRAQ 559
            K     PR+T  I   +    ++D +V+++     ++  G  K+      +P  + + Q
Sbjct: 474 FKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ 533

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
              G           DF     I++     +F ++ G +    V ++P  + +     L 
Sbjct: 534 LPNG-----------DFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLK 582

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKL 678
             L +   ++I ++      ESS    +++F +K    +R  L   ++I +   +   + 
Sbjct: 583 ITLGIPNNQQILSVFFADSFESSQ---FLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRF 639

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              DE++SV    +  +I+L T   + ++  IS I ++  RNS G++
Sbjct: 640 KEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYT-RNSTGIK 685



 Score = 37.7 bits (86), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 798 QFILTVSEKGFGKRTS-SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           QF++ +S+  F KR +     +I  +     +  ++ +  E   L++VF       I+L+
Sbjct: 606 QFLIFISKFSFAKRMNLDQLMKIKQK-----KLQNIFRFKEGDELISVFLEEKLKNIVLI 660

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +   +++ ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 661 TTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 813

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 234/686 (34%), Positives = 363/686 (52%), Gaps = 92/686 (13%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           +YL YAI+V+ GRA+PD+ DG+KPV RRIL+ M ++G+  + K VK AR+ GEV+GKYHP
Sbjct: 53  AYLEYAISVVKGRALPDVCDGMKPVQRRILYAMKRLGLNPDVKTVKSARVVGEVLGKYHP 112

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A YDA+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL K A  LL +L 
Sbjct: 113 HGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSADGDGAAAMRYTEVRLSKYADLLLGELD 172

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K TV F PNYDG+ +EPV+L AR P +L+NG  GIAVGMAT IP+HNL EV +  + VI 
Sbjct: 173 KGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSSGIAVGMATEIPSHNLTEVGEAAIEVIR 232

Query: 208 NPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           NP+I  D L+EI++GPDFP GA VI   + IKN Y +G G++ +R   H E+ S  + Q+
Sbjct: 233 NPEITTDELLEIVKGPDFPGGAQVISSASDIKNVYRSGYGNLQVRATYHFEELSRGQWQL 292

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKR-----------------IVDI-ADLRDESDRQG- 307
           V   +PY+V+   ++ ++  L   K                  I+++ + +RDES  +  
Sbjct: 293 VFDSVPYKVSVMKVMSELEALTNPKAPQGKKSLTAKQQQDKQLIMNVMSGMRDESSAEAP 352

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTLIGILKAFVAF 364
            R+VI+ K +    + +++ +   TSL++    N+V   ++G KP +  L  IL  +V+F
Sbjct: 353 VRLVIDPKSKSIDREELVSTILSKTSLETSCKFNLVVIGIDG-KPRQKGLKDILSEWVSF 411

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V  R++  LN+A  R H L G  I + +++EV+RIIR + +P   ++EL+      
Sbjct: 412 RLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIEEVIRIIRGTDDP---KKELITH---- 464

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q   ILE++L +L  L    +R EL  L  E 
Sbjct: 465 ----------------------FGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEA 502

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +    +L+   +L   + +E+    D     RRT ++E          ++ E + V VS 
Sbjct: 503 ERLRGLLTDEKKLRREVTKEIRQDIDTYGDERRT-LIEEAKGASIAKQVIDEPVTVIVSE 561

Query: 545 LGYVKRVPLSVYRAQ----RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            G+++      + A+    + G K R  +  R  D   +L+I+S                
Sbjct: 562 KGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVD---NLYILSNTG------------- 605

Query: 601 EKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWN------NLYVVFATK 653
            +++ +P+ S P ARG          +G  ++  + F + +  ++      +  ++F + 
Sbjct: 606 -RIYSIPVSSLPSARG----------EGTHVSAFVQFQDGDVPFDYICGAPDTVLLFTSD 654

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD 679
                  K+SD     R GK    LD
Sbjct: 655 AAMGFFCKMSDLAVRQRGGKSFFILD 680


>gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus
           c2]
 gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2]
          Length = 758

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 210/555 (37%), Positives = 312/555 (56%), Gaps = 45/555 (8%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H I        G    SI +  + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++
Sbjct: 14  HGIGMGGNSTDGFERRSIAEFSEQAYLNYAMYVILDRALPSVCDGLKPVQRRIVYAMSEL 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+    K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGNFGS D D
Sbjct: 74  GLTAASKHKKSARTVGDVIGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNFGSPD-D 132

Query: 124 PP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           P   AA RYTE RL   AH LL +  + TVD++PN+DG+ +EP +L AR PNVL+NGG G
Sbjct: 133 PKSFAAMRYTESRLTAYAHSLLAEAEQGTVDWQPNFDGTLEEPTLLPARLPNVLLNGGMG 192

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNA 240
           IAVG++T+IP HNL EVV   +A++D P+  +D L   +RGPDFPT A +I     I   
Sbjct: 193 IAVGLSTDIPPHNLREVVAATIALLDEPESTVDDLCRHLRGPDFPTEAEIITPPDEIMQM 252

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG GS+  R    +E+      +I++T +P+QV+ + +LE+IA  +  K++  + DLR
Sbjct: 253 YRTGTGSVRQRARYEVEQG-----EIIITALPFQVSGSKILEQIAAQMNAKKLPLVTDLR 307

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIG 356
           DESD +     V+I   R   A+ ++  L+  T L+  + VNM  +AL+G +P    L  
Sbjct: 308 DESDHEAPTRLVIIPRSRQVDAEALMAHLFATTDLEKSYRVNMNVIALDG-RPRVMNLKD 366

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L  ++ FR + + RR ++ L K  +R  +L GL IA  N+DEV+ +IR +  P+     
Sbjct: 367 LLSEWLQFRRQTLTRRIQWRLAKVENRLEILAGLLIAFLNIDEVIAVIREADEPKA---- 422

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                       +LI   D             L+E Q  AILE+RL +L  L    I+ E
Sbjct: 423 ------------ELIARFD-------------LTERQAEAILEIRLRQLAKLEEIAIKKE 457

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIV 534
              L  E +    +L+  SRL  +++ EL     +    RR+R+V       + +   I 
Sbjct: 458 QGELMAESEILRGLLADESRLRNLLRDELQDDAQKYGDARRSRLVTRGAAQALAETALIS 517

Query: 535 REDMVVTVSHLGYVK 549
            E + V +S  G+++
Sbjct: 518 SEPVTVVLSKNGWIR 532


>gi|257472216|gb|ACV53949.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472218|gb|ACV53950.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/256 (62%), Positives = 205/256 (80%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 124 TNIPPHQLGEVIDGVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIEL+R A+A+V+
Sbjct: 244 MRIVIELRRDANANVL 259


>gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
 gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
          Length = 739

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 238/735 (32%), Positives = 390/735 (53%), Gaps = 71/735 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  +
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRGSYRMRAVYSV 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EK-----HEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
                           + E+Q  AILEL+L  L  L   +IR+E + L  +   I+E L+
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIKEQDLMPAETVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +        +  R  D      +  T+  V F    G  Y   +  L
Sbjct: 513 WV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G  L + LS   G  ++ I  + +D+ S     ++ A+  G   + +     
Sbjct: 565 P--SARGLGDPLSSKLSPASG--VSFIQVYLDDDES----ELIAASSAGYGFKTQTKQLD 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + 
Sbjct: 617 TTAKAGKTFLTVPEKSKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL--NKGKGNKL 674

Query: 727 ISLAKGDQVISMAIV 741
           I L   +Q++SM  +
Sbjct: 675 IQLEAKEQILSMTTL 689


>gi|257472222|gb|ACV53952.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/256 (62%), Positives = 204/256 (79%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K  RI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSGRIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 124 TNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIEL+R A+A+V+
Sbjct: 244 MRIVIELRRDANANVL 259


>gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153]
          Length = 777

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 32  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 91

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 92  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 151

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 152 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 211

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 212 LKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 271

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 272 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 331

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 332 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 391

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 392 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 440

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 441 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 482

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 483 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 539 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRT 588

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 589 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSSGYG 639

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 640 FITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 699

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 700 ELKIMA--KGKGLQIIGLNAGESMTHTAV 726


>gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
 gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
          Length = 777

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 256/779 (32%), Positives = 390/779 (50%), Gaps = 81/779 (10%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+E   +  D   E    S+++ D  + +YL YAI+V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+G++HPHG+ A YDAL R++QD++ R  LI+GQGNFGS
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++   T DF PNYDGS  EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT IP HNL EV   CVA++ NP ++L   + ++ GPDF TG  +I     I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------- 291
            AYA GRGS+ +R    +E+ +  + Q+V+ E+P+  +   +LE+I EL   K       
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 292 ----------RIVDIAD-LRDESDRQ-GYRVVIELKRGASADV--ILNQLYRYTSLQSLF 337
                      ++++ D +RDES R+   R+V E  R +  D    +N L   TSL++  
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFE-PRSSRIDQAEFVNTLLARTSLETSV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            +N+V +    KP +  L+ IL+ +VA+R + V RR+K+ L +   R H+L G    + N
Sbjct: 360 PINLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+  IR S +P  A   LM R                            L+E+Q   
Sbjct: 420 LDEVIETIRNSDDPRPA---LMAR--------------------------FDLTELQADD 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL +L  L    I  EL +   E  E   +L+    +   I  E+ +   +    R
Sbjct: 451 ILDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTRRIISEIEADAKQFGDDR 510

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  +V E + V VS  G++        R Q+  G   S +  +  D 
Sbjct: 511 RT-LIQAEQRAVAEVKVVDEAVTVIVSQKGWL--------RVQKGHGLVLSALTFKPGDA 561

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   +   ++   S G  Y   V  LP G  +  G+ + + + L  G +    +  
Sbjct: 562 LYATFECRSVDPLVVLGSDGRAYSMDVADLPGG--RGDGQPVTSFIELAPGTQALHYL-- 617

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693
               +      ++  T  G      +SD +   R+GK  + L+  D +   L ++T    
Sbjct: 618 ----AGARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTLEDGDTLQRPLVLDTDADG 673

Query: 694 NDILLTTKL---GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           + +     L   G+ + +P + ++  A     G RGI+L   D   ++  V    A+ D
Sbjct: 674 SPVGRLATLSADGRLLLYPAAEVKTLA----RGGRGITLMALDAKETLQSVAQLAAERD 728


>gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
 gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
          Length = 739

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 247/732 (33%), Positives = 383/732 (52%), Gaps = 71/732 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D DP   AA RYTE +L +
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPD-DPKSFAAMRYTEAKLSQ 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T D++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSEVLLSELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP++  + + E I  PD PT A +I     +    +TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRGSYRMRSVYRI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+T++PYQV+ + ++ +IA+ ++ K++  ++D+RDESD Q   R+VI L+
Sbjct: 252 EKN-----EIVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQNPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R+E V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNMNMIGADG-RPQVKSIRRILLEWIEIRKETVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LNK   R H+L GL IA  N+DEV+RIIR    P+    ELM R +N         
Sbjct: 366 LQYHLNKIEKRLHILGGLIIAYLNIDEVIRIIREEEQPKA---ELMSR-FN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            IDD               +Q  AILEL+L  L  L   ++R E   L  +     + L+
Sbjct: 413 -IDD---------------IQAEAILELKLRHLARLEEMEMRREQEELEAKAALIREQLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV       M ++D +  + + V +S  G++  
Sbjct: 457 NPESLKALIINELKDDAKKYGDDRRSPIVHRAEATAMSEQDFMPADPVTVVLSEAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                     R  KG       +  R  D         ++  V      G  Y   +  L
Sbjct: 515 ----------RSAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDESGRSYALAINSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L + LS   G     +    +DE+      V+  +  G   + +     
Sbjct: 565 P--SARGLGEPLSSKLSPASGVGFKQVF-IADDETE-----VMALSSKGYGFKTQAKQLD 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++GK  + L  +  ++ + +  Q   + L T  G+ +   +S + V       G + 
Sbjct: 617 TNAKAGKAFLTLPEKATVMPLTSVDQATHLALLTSTGRLLILELSELPVL--NKGKGNKL 674

Query: 727 ISLAKGDQVISM 738
           I L + DQ++ M
Sbjct: 675 IQLEEKDQIVFM 686


>gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 704

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 233/666 (34%), Positives = 357/666 (53%), Gaps = 71/666 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+N
Sbjct: 61  PD-DPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLN 119

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTG 236
           G  GIAVGMAT+IP HN+ EVV+  + +I++P   L  LM+ ++GPDFPT A I+   + 
Sbjct: 120 GVTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSD 179

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++  Y TGRGSI +R V H E +      IV++ +P+QV+ A +LE+IA  +R K++  +
Sbjct: 180 LEKIYQTGRGSIKMRAVWHKEGSD-----IVISALPHQVSGAKLLEQIAGQMRAKKLPMV 234

Query: 297 ADLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV--NMVALNGYKPERF 352
            DLRDESD +    ++ + R +    D ++N L+  T L+  F V  NM+ LN  +PE  
Sbjct: 235 EDLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNN-RPEVK 293

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  IL  ++ FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR    P+ 
Sbjct: 294 GLTQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEPKG 353

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               LM+R                            +S++Q  AIL+ +L  L  L    
Sbjct: 354 I---LMER--------------------------FGISDIQADAILDTKLRHLAKLEEVK 384

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDE 530
           IR E ++L  E  +  ++L S  RL  ++K+EL +  ++    RR+ IVE      + + 
Sbjct: 385 IRGEQDALDKERAKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPIVERAEAKALTER 444

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS----GVVMRDEDFVTDLFIVSTH 586
           D +  E + V +S  G+V            R  KG       +  +  D         ++
Sbjct: 445 DLMPNEMITVVISEKGWV------------RHAKGHEVDCHSLNYKSGDNYLAHACGKSN 492

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V F  S G  Y  +   LP  S + +G+ +   L++ +G  I  ++   ED+  W   
Sbjct: 493 QQVAFLGSDGRSYSLEAHTLP--SARGQGEPITGRLNITEGSSIRQVI-MGEDDQLW--- 546

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQ 704
             +  +  G     K SD +  NRSGK  + L +  E+L+ +     Q ++IL  T  G+
Sbjct: 547 --LVGSDAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVNDLQHDEILAVTNQGR 604

Query: 705 CVRFPI 710
            + FPI
Sbjct: 605 MLLFPI 610


>gi|163814199|ref|ZP_02205591.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
 gi|158450648|gb|EDP27643.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
          Length = 758

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 246/755 (32%), Positives = 386/755 (51%), Gaps = 63/755 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + KCA
Sbjct: 5   ILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLAGS-DKPHRKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFG+VDG   AA RYTE R+
Sbjct: 64  RIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYTEARI 123

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIPTHN
Sbjct: 124 SKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
           LGEV+D  VA +++P+I+L+ L++++ GPDF TG +I      + N YATG G I +RG 
Sbjct: 184 LGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIKVRGK 243

Query: 254 SHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +      R+ I VTE+PY +    A  L+ +AELVR + +  + D+ D  D+ G  + 
Sbjct: 244 VEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNGECLC 303

Query: 312 IELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           I++K+G S +    I+N LY+  +L+  F VN+  +N  KPE   L  ILK +  F+  +
Sbjct: 304 IDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGKPEVMGLKKILKVYTDFKYGL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
              + + LL +  +   + +GL  AV  +D ++ I+R S     A+  LM    + S++K
Sbjct: 364 YDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMH--GDTSNVK 421

Query: 429 DLIDLIDDSSYTIGSDGT---MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                        GS+     +  +E Q  AIL +RL +L GL  + ++ EL+     IK
Sbjct: 422 FRFK---------GSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELSDAEKLIK 472

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   ++ SR  +   +  ++L +K +   PRRT+I      +  +  +V  D+ V +   
Sbjct: 473 KYTRLMESRDAMKQQMIDDMLEIKAKYAIPRRTQIHNYGTVVVKKAEVVATDVAVLLDRF 532

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K V  +VY             + RD  F            +  F+    VY  KV  
Sbjct: 533 YYIKVVDANVYEKNIEQ-------INRDYRFAVK---CQNLDRIAVFADNNQVYTIKVAD 582

Query: 606 L----------------PIGSPQARGKALINILSLNQGERI---TTIMPFPEDESSWNNL 646
           +                 IG    +G  +    ++N  E I     I  F  D+      
Sbjct: 583 IIKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDK------ 636

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++F +K G  +    S F    R+   +    + D+I+ +   ++ + I+  ++ G  +
Sbjct: 637 -LLFVSKQGLAKVVDGSAFDTTRRAANAS---KAGDDIIYIGKFSEGDFIIAQSEKGYYI 692

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           R  IS I    G+ + GV+ I+L +GD V+    V
Sbjct: 693 RVDISEIPE-KGKGAAGVKLINL-EGDDVLESVFV 725


>gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 739

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 349/635 (54%), Gaps = 69/635 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           ++ S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR
Sbjct: 9   STQSVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ++S R   I+GQGN+GS+D DP   AA RYTE R
Sbjct: 69  TVGDVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN
Sbjct: 128 LSKYAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           + EV++ C+ ++ NP   ++ ++EII  PD+P GA +I  +  I   Y +G GSI  + V
Sbjct: 188 ITEVINACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAV 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              +    +   +++T +P+QV+ A+++E+IA  +++++I  I +++DESD +    ++ 
Sbjct: 248 YEYD----NHGNVIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVL 303

Query: 314 LKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVV 369
                  ++  I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R   +
Sbjct: 304 YSASTKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRRHTL 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +  L+K  DR H+L G+ IA  N+DEV+ IIR   +P     EL  R         
Sbjct: 363 RRRLQTSLDKVLDRLHILEGMLIAFLNIDEVIDIIRNYDDPSL---ELQSR--------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AIL +RL +L  +   +I+ E   L  E KE L+
Sbjct: 411 -----------------FALSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKE-KELLE 452

Query: 490 -ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLG 546
             L+S  +   ++K+EL  +  +    RR++IVE      +E++D +  E + V +S  G
Sbjct: 453 GYLNSEVKFKNLMKKELKQILADFGDSRRSKIVEADKAQALEEKDLMPSERVTVILSKAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +       G+  + ED        +++  ++FF+ LG  Y   V + 
Sbjct: 513 WV--------RCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKLIFFTKLGKAYSMYVDKF 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPF-PEDE 640
               P ARG           GE ITT +P   EDE
Sbjct: 565 ----PSARG----------YGEHITTYIPLDKEDE 585


>gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710]
 gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304]
 gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579]
          Length = 765

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 373/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESLTHTAV 714


>gi|257472154|gb|ACV53918.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472162|gb|ACV53922.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472166|gb|ACV53924.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472178|gb|ACV53930.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472180|gb|ACV53931.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472182|gb|ACV53932.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472184|gb|ACV53933.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472194|gb|ACV53938.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472202|gb|ACV53942.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472204|gb|ACV53943.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472206|gb|ACV53944.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 207/256 (80%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 124 TNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIE++R A+A+VI
Sbjct: 244 MRIVIEIRRDANANVI 259


>gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568]
 gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196]
          Length = 765

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 373/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESLTHTAV 714


>gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 739

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 349/635 (54%), Gaps = 69/635 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           ++ S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR
Sbjct: 9   STQSVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ++S R   I+GQGN+GS+D DP   AA RYTE R
Sbjct: 69  TVGDVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN
Sbjct: 128 LSKYAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           + EV++ C+ ++ NP   ++ ++EII  PD+P GA +I  +  I   Y +G GSI  + V
Sbjct: 188 ITEVINACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAV 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              +    +   +++T +P+QV+ A+++E+IA  +++++I  I +++DESD +    ++ 
Sbjct: 248 YEYD----NHGNVIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVL 303

Query: 314 LKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVV 369
                  ++  I+  L   T L+  F V  NM+ L+  +P+   L+ IL  ++ +R   +
Sbjct: 304 YSASTKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDILNEWLEYRRHTL 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R         
Sbjct: 363 RRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIEIIRNFDDPSL---ELQSR--------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AIL +RL +L  +   +I+ E   L  E KE L+
Sbjct: 411 -----------------FALSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKE-KELLE 452

Query: 490 -ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLG 546
             L+S  +   ++K+EL  +  +    RR++IV+      +E++D +  E + V +S  G
Sbjct: 453 GYLNSEVKFKNLMKKELKQILADFGDSRRSKIVQADKAQALEEKDLMPSERVTVILSKAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +       G+  + ED        +++  ++FF+ LG  Y   V + 
Sbjct: 513 WV--------RCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKLIFFTKLGKAYSMYVDKF 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPF-PEDE 640
               P ARG           GE ITT +P   EDE
Sbjct: 565 ----PSARG----------YGEHITTYIPLDKEDE 585


>gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 759

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 245/747 (32%), Positives = 382/747 (51%), Gaps = 82/747 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P ++DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 13  ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSARVVGEILGKY 72

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE  L   A  LL +
Sbjct: 73  HPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLTPLAELLLSE 132

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EPV L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 133 INQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAVAL 192

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P + L  LM+ I  PDF  G  I+  T  +++ Y TG+GS+ +R    I+K +  + 
Sbjct: 193 LKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQIDKMARGQW 252

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVD-IADLRDESDRQ 306
           +++V+E+P   + A +L +I E                 L  +K ++D I  +RDESD +
Sbjct: 253 RVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKVRDESDSE 312

Query: 307 -GYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      +  +N L   TSL+   SVN+V +    +P +  L  IL+ ++ 
Sbjct: 313 HPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNLKTILQEWLD 372

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R   V RR ++ L+    R H+L G  IA  ++DE++R+IR S  P+            
Sbjct: 373 YRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPK------------ 420

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               +DLI                 L+E+Q   ILE+RL +L  L    +++ELN L  E
Sbjct: 421 ----QDLIR-------------QFGLTEIQADDILEIRLRQLARLEGVKLKSELNELREE 463

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                ++LS       +I +E+ +   +    RRT +VE             E + + +S
Sbjct: 464 QGSLKNLLSDEDAKKKLIIKEMKADAKQFGDARRT-LVEAAERATLTQTTADEPITLILS 522

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA+       S +  ++ D +  +    T  SV+    LG  Y    
Sbjct: 523 QKGWI--------RARAGHDVDLSQIAFKEGDDLQQVLQTRTVQSVVVLDDLGRSYTIN- 573

Query: 604 WRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              P   P+ RG    L +++ +  G +   ++      S  N+ + + A   G     K
Sbjct: 574 ---PADVPKGRGDGVPLGSLIEIQAGAKALAML------SGSNDDHYLLAHSGGYGFICK 624

Query: 662 LSDFIQINRSGKIAMKLDSRDEILS------VETCTQENDILLTTKLGQCVRFPISAIRV 715
           L D    +++GK  M L++ + +L             +  ++L T+  + + FPI  +++
Sbjct: 625 LEDLHSRSKTGKTVMMLEAGETVLPPVPVYLSALINPDCKVVLATEQKRLLAFPIGEMKI 684

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIV 741
            A GR   G++ I L   D++I + ++
Sbjct: 685 MAKGR---GLQLIRLQGNDKLILINVL 708


>gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640]
 gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06]
          Length = 765

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIVKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPISSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESMTHTAV 714


>gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF]
 gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
 gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii]
 gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 739

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 333/606 (54%), Gaps = 59/606 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR+E + L  +     + L 
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  G+V  
Sbjct: 457 NPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +        +  R  D      +  T+  V F    G  Y      LPI +
Sbjct: 515 ------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----LPISN 563

Query: 611 -PQARG 615
            P ARG
Sbjct: 564 LPSARG 569


>gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399]
 gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013]
          Length = 767

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESLTHTAV 716


>gi|295094763|emb|CBK83854.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus sp. ART55/1]
          Length = 758

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 313/551 (56%), Gaps = 22/551 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + KCA
Sbjct: 5   ILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLAGS-DKPHRKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFG+VDG   AA RYTE R+
Sbjct: 64  RIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYTEARI 123

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIPTHN
Sbjct: 124 SKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
           LGEV+D  VA +++P+I+L+ L++++ GPDF TG +I      + N YATG G I +RG 
Sbjct: 184 LGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIKVRGK 243

Query: 254 SHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +      R+ I VTE+PY +    A  L+ +AELVR + +  + D+ D  D+ G  + 
Sbjct: 244 VEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNGECLC 303

Query: 312 IELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           I++K+G S +    I+N LY+  +L+  F VN+  +N  KPE   L  ILK +  F+  +
Sbjct: 304 IDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGKPEVMGLKKILKVYTDFKYGL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
              + + LL +  +   + +GL  AV  +D ++ I+R S     A+  LM    + S++K
Sbjct: 364 YDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMH--GDTSNVK 421

Query: 429 DLIDLIDDSSYTIGSDGT---MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                        GS+     +  +E Q  AIL +RL +L GL  + ++ EL      IK
Sbjct: 422 FRFK---------GSEADAKFLCFTEKQADAILAMRLQKLIGLEINALKKELADAEKLIK 472

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   ++ SR  +   +  ++L +K +   PRRT+I      +  +  +V  D+ V +   
Sbjct: 473 KYTRLMESRDAMKQQMIDDMLEIKAKYAIPRRTQIHNYGTVVVKKAEVVATDVAVLLDRF 532

Query: 546 GYVKRVPLSVY 556
            Y+K V  +VY
Sbjct: 533 YYIKVVDANVY 543


>gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149]
 gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 765

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 373/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L N  + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNSAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESLTHTAV 714


>gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
 gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
          Length = 748

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 243/704 (34%), Positives = 367/704 (52%), Gaps = 86/704 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +  D EE+  +   S     + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTESTVVYDAEEQIPLKQFS-----EKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKSTAKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQ 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   +  LL +LG+ TVD++PN+DG+  EP VL A+ P VL+NG
Sbjct: 116 D-DPKSFAAMRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMAT+IP HNL E+V+  + +++NP+  +  L E + GPD PT A +I  R  I
Sbjct: 175 TTGIAVGMATDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDI 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TG+GS+ +R +   E         V+T +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 235 IKMYETGKGSLKMRAIWTKEGNDA-----VITALPHQVSGAKILEQIAAQMQAKKLPMVA 289

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMVALNGYKPERFT 353
           DLRDESD +    ++ + R    D+  ++N L+  T L+  + V  NM+ +NG +P   +
Sbjct: 290 DLRDESDHENPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGING-RPGVRS 348

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  +++FR   V RR ++ L+    R H+L    IA  NLDEV+ I+R    P   
Sbjct: 349 LDKILGDWLSFRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKP--- 405

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LMQR                            L+E Q   IL+ RL +L  L    I
Sbjct: 406 REVLMQR--------------------------FDLTEEQANYILDTRLRQLARLEEMKI 439

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R E + L  E       L S   +  +IK+++L V  E    RR+ IV  E      ++ 
Sbjct: 440 RGEQDELQKERDTIEKTLGSARMMKTLIKKDMLQVLKEHGDERRSPIVTREESQAFSEDQ 499

Query: 532 CIVREDMVVTVSHLGYVKRV------PLSV-YRAQ---RRGGKGRSGVVMRDEDFVTDLF 581
            +  E + V +S  G+++        P S+ Y+A    +   +G+S              
Sbjct: 500 LLTSEPVTVVLSEKGWIRSAKGHEMDPASLSYKAGDEFKFASRGKS-------------- 545

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
               + SV+   S G  Y      LP  S + +G+ +   L+   G  I  ++   ED+ 
Sbjct: 546 ----NQSVILIDSTGRSYALAAHTLP--SARGQGEPVTGRLNPPSGATIEGMLMGSEDQR 599

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
                 V+ A+  G     KL D +  N++GK A+ L    E+L
Sbjct: 600 ------VLLASDAGYGFVGKLGDLVSKNKAGKAALTLPKGAEVL 637


>gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
 gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
          Length = 739

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 242/738 (32%), Positives = 390/738 (52%), Gaps = 77/738 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V+ G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P+                     
Sbjct: 366 LEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV------------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
           L+D             + E+Q  AILEL+L  L  L   +IR E + L  +   I+E L+
Sbjct: 407 LMDH----------FKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + + ++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIREQDLMPAEAVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +        +  R  D      +  T+  + F    G  Y      L
Sbjct: 513 WI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYA-----L 559

Query: 607 PIGS-PQAR--GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           PI S P AR  G+ L + L+   G  +  I  + +DE S     ++ A+  G   + ++ 
Sbjct: 560 PISSLPSARGLGEPLSSKLAPASG--VAFIQVYLDDEES----ELIAASSSGYGFKTQVK 613

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 ++GK  + +  + + L + +      + + +  G+ +   +S +         G
Sbjct: 614 QLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNL--NKGKG 671

Query: 724 VRGISLAKGDQVISMAIV 741
            + I L   +Q++SM  +
Sbjct: 672 NKLIQLEAKEQILSMTTL 689


>gi|72080375|ref|YP_287433.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
 gi|71913499|gb|AAZ53410.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 846

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 218/706 (30%), Positives = 373/706 (52%), Gaps = 50/706 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M Q+G++ +K Y K AR+ G+V+GKYHPH
Sbjct: 21  FIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGKYHPH 80

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDAL R+AQ+W +   L+E  GN GS+D DPPAA RYTE RL + +  LL+ + K
Sbjct: 81  GDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISK 140

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + V F PN+D S +EP +L A +PN+L+NG  GIA G AT IP HNLGEV+D  + +I N
Sbjct: 141 NVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKN 200

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I I     I + +G +  I +
Sbjct: 201 PGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIKISSDYKIFEKNG-QNVIEI 259

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  ++IEL++  + D+I+N L 
Sbjct: 260 TSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLL 319

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ  +S N VA+    P+  ++  ++  ++    ++ +    + L K + R  ++ 
Sbjct: 320 QKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIIT 379

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           G        DEV+++IR S N +               + DLI   +             
Sbjct: 380 GFLKVADITDEVIKVIRASDNSKVGV------------VSDLIKFFN------------- 414

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            S+ Q  AI  +RL RL+ + +     E  +L   I     ++ ++      +   L   
Sbjct: 415 FSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDF 474

Query: 509 KDELDTPRRT-RIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR------VPLSVYRAQR 560
           K     PR+T  I   +    ++D +V+++     ++  G  K+      +P  + + Q 
Sbjct: 475 KKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQL 534

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
             G           DF     I++     +F ++ G +    V ++P  + +     L  
Sbjct: 535 PNG-----------DFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKI 583

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLD 679
            L +   ++I ++      ESS    +++F +K    +R  L   ++I +   +   +  
Sbjct: 584 TLGIPNNQQILSVFFADSFESSQ---FLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFK 640

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             DE++SV    +  +I+L T   + ++  IS I ++  RNS G++
Sbjct: 641 EGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYT-RNSTGIK 685


>gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
 gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385]
 gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
          Length = 767

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSSGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594]
          Length = 765

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T           
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIVKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTILPVVILDSSGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESMTHTAV 714


>gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900]
          Length = 739

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 341/610 (55%), Gaps = 67/610 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
                           + E+Q  AILEL+L  L  L   +IR+E + L  +   I+E L+
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIKEQDLMPAETVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +        +  R  D      +  T+  V F    G  Y      L
Sbjct: 513 WV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----L 559

Query: 607 PIGS-PQARG 615
           PI + P ARG
Sbjct: 560 PISNLPSARG 569


>gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058]
          Length = 739

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 332/606 (54%), Gaps = 59/606 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR+E + L  +     + L 
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  G+V  
Sbjct: 457 NPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +        +  R  D      +  T+  V F    G  Y      LPI +
Sbjct: 515 ------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----LPISN 563

Query: 611 -PQARG 615
            P ARG
Sbjct: 564 LPSARG 569


>gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2]
          Length = 739

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 340/610 (55%), Gaps = 67/610 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
                           + E+Q  AILEL+L  L  L   +IR+E + L  +   I+E L+
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIKEQDLMPAETVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +        +  R  D      +  T+  V F    G  Y      L
Sbjct: 513 WV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----L 559

Query: 607 PIGS-PQARG 615
           PI + P ARG
Sbjct: 560 PISNLPSARG 569


>gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
          Length = 767

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 243/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + +   G  
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSGSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESLTHTAV 716


>gi|269467763|gb|EEZ79527.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [uncultured SUP05 cluster bacterium]
          Length = 275

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 161/266 (60%), Positives = 203/266 (76%), Gaps = 2/266 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E     V+I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G ++NK Y 
Sbjct: 12  EPNFPIVTIEDEMRDSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMEVLGNDYNKSYK 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD  AA RYTE
Sbjct: 72  KSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +H LL DL KDTVDF  NYDGS  EP VL  R PN+LVNG  GIAVGMATNIP 
Sbjct: 132 IRMAKISHELLRDLEKDTVDFIDNYDGSESEPSVLPTRVPNLLVNGSSGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++ C+ VIDN ++ +D L++II GPDFPT  +I G  GI+ AY TG+G I +R 
Sbjct: 192 HNIDEVINACLLVIDNDEVSIDELLDIIHGPDFPTAGIINGADGIRQAYETGKGKIYLRS 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKA 278
            SH+E    D++ IVVTE+PYQVNKA
Sbjct: 252 RSHVEGE--DKQSIVVTELPYQVNKA 275


>gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
 gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
          Length = 765

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 140 IHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESMTHTAV 714


>gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 739

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 238/735 (32%), Positives = 388/735 (52%), Gaps = 71/735 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V+ G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P+                     
Sbjct: 366 LEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV------------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
           L+D             + E+Q  AILEL+L  L  L   +IR E + L  +   I+E L+
Sbjct: 407 LMDH----------FKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + + ++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIREQDLMPAEAVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +        +  R  D      +  T+  + F    G  Y   +  L
Sbjct: 513 WI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISNL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L + L+   G  +  I  + +DE S     ++ A+  G   + ++    
Sbjct: 565 P--SARGLGEPLSSKLAPASG--VAFIQVYLDDEES----ELIAASSSGYGFKTQVKQLD 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++GK  + +  + + L + +      + + +  G+ +   +S +         G + 
Sbjct: 617 TNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNL--NKGKGNKL 674

Query: 727 ISLAKGDQVISMAIV 741
           I L   +Q++SM  +
Sbjct: 675 IQLEAKEQILSMTTL 689


>gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
 gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
          Length = 739

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 238/735 (32%), Positives = 382/735 (51%), Gaps = 71/735 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++W  K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWTSKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D DP   AA RYTE +L +
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPD-DPKSFAAMRYTEAKLSQ 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP++  + + E I  PD PT A +I     +     TGRGS  +R V  +
Sbjct: 192 VVKGTIALIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRGSYRMRAVYSV 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                D+ +I++TE+PYQV+ + ++ +IA+ ++ K++  ++D+RDESD     R+VI L+
Sbjct: 252 -----DKNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHANPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R+  V RR
Sbjct: 307 SNRIDAESVMSHLFATTDLESSYRVNMNMIGADG-RPQVKSIRRILLEWIEIRKTTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LNK   R H+L GL IA  N+DEV++IIR    P+     LMQR            
Sbjct: 366 LQYHLNKIEKRLHILGGLIIAYLNIDEVIQIIREEDQPKPV---LMQR------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   ++R E   L  +     + L+
Sbjct: 411 --------------FNIDEIQAEAILELKLRHLAKLEEMEMRREQEELEAKAAVIREQLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV+      + + + +  + + V +S  G++  
Sbjct: 457 NPESLKSLIISELKDDAKKFGDDRRSPIVQRAEAAVINETEMLPADPVTVVLSEAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                     R  KG       +  R  D         ++  V      G  Y   +  L
Sbjct: 515 ----------RCAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDDTGRSYALAINTL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L + LS   G     ++   EDE+      ++ A+  G   + +     
Sbjct: 565 P--SARGLGEPLSSKLSPGSGVGFKQVL-VAEDETE-----ILAASNKGYGFKTQAKQLD 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++GK  + L    E+++++       + L +  G+ +   ++ + V       G + 
Sbjct: 617 TSAKAGKAFLNLSEGAEVMNLQPLEDATHVALLSSAGRLLIVDLAELPVL--NKGKGNKL 674

Query: 727 ISLAKGDQVISMAIV 741
           I L  GDQ++SM ++
Sbjct: 675 IQLEDGDQILSMTLL 689


>gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013]
          Length = 765

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 238/737 (32%), Positives = 368/737 (49%), Gaps = 86/737 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGIS 728
            +++ A    + + G++
Sbjct: 688 ELKIMAKGKGLQIIGLN 704


>gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE]
 gi|294836969|ref|ZP_06781652.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6013113]
 gi|294857647|ref|ZP_06795416.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6013150]
 gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE]
          Length = 739

 Score =  340 bits (872), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 332/606 (54%), Gaps = 59/606 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR+E + L  +     + L 
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  G+V  
Sbjct: 457 NPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +        +  R  D      +  T+  V F    G  Y      LPI +
Sbjct: 515 ------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----LPISN 563

Query: 611 -PQARG 615
            P ARG
Sbjct: 564 LPSARG 569


>gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
 gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
          Length = 461

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 193/489 (39%), Positives = 294/489 (60%), Gaps = 43/489 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSR 496
             +L S  R
Sbjct: 453 EQLLGSERR 461


>gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE]
          Length = 745

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 332/606 (54%), Gaps = 59/606 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 19  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 78

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 79  DVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 137

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 138 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 197

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 198 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 257

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 258 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 312

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 313 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 372 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 418

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR+E + L  +     + L 
Sbjct: 419 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  G+V  
Sbjct: 463 NPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV-- 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA +        +  R  D      +  T+  V F    G  Y      LPI +
Sbjct: 521 ------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----LPISN 569

Query: 611 -PQARG 615
            P ARG
Sbjct: 570 LPSARG 575


>gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 767

 Score =  340 bits (871), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLSDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTTDSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESLTHTAV 716


>gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU]
 gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 739

 Score =  340 bits (871), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 340/610 (55%), Gaps = 67/610 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP      L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
                           + E+Q  AILEL+L  L  L   +IR+E + L  +   I+E L+
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIKEQDLMPAETVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +        +  R  D      +  T+  V F    G  Y      L
Sbjct: 513 WV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----L 559

Query: 607 PIGS-PQARG 615
           PI + P ARG
Sbjct: 560 PISNLPSARG 569


>gi|257472152|gb|ACV53917.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472158|gb|ACV53920.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472160|gb|ACV53921.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472164|gb|ACV53923.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472168|gb|ACV53925.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 204/256 (79%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 124 TNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            RVVIEL+R A+A VI
Sbjct: 244 MRVVIELRRDANAHVI 259


>gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
 gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
          Length = 767

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 248/766 (32%), Positives = 382/766 (49%), Gaps = 89/766 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  +I     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE------------- 286
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E             
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 287 ----LVREKRIVDIAD-LRDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSV 339
               L  +K ++D+ D +RDESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                 DL+                 L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA----------------DLM-------------AAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRD 573
            + E    +L     D    E + + +S  G+++           R G     S    ++
Sbjct: 511 LVEEAGRAVLTQTTAD----EPITLILSEKGWIR----------SRAGHNLDLSQTAFKE 556

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +       T   V+   SLG  Y      +P G  +  G  + +++ L  G +   +
Sbjct: 557 GDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAM 614

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL------SV 687
           +      +     + + +   G     KL+D +   ++GK+ M +DS + +L      + 
Sbjct: 615 L------TGQPEQHYLLSGSGGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYAS 668

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKG 732
                +  I+L +   + + F I  ++V   GR   G++ +SLA+G
Sbjct: 669 SLINPDCKIVLASSDHRLLAFSIGELKVMPKGR---GLQLMSLAEG 711


>gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
 gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
          Length = 780

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 35  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 94

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 95  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 154

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 155 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 214

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+G + +R    IEK +  + 
Sbjct: 215 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGRVRVRARYEIEKLARGQW 274

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 275 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 334

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 335 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 394

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T           
Sbjct: 395 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT----------- 443

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 444 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 486 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 542 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDCLKQTLEGRTILPVVILDSSGRT 591

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 592 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 642

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 643 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 702

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 703 ELKIMA--KGKGLQIIGLNAGESMTHTAV 729


>gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355]
          Length = 765

 Score =  340 bits (871), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIVKEMQADMKQFGDVRRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESLTHTAV 714


>gi|257472176|gb|ACV53929.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 206/256 (80%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DHPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 124 TNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIE++R A+A+VI
Sbjct: 244 MRIVIEIRRDANANVI 259


>gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
 gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
          Length = 765

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 370/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 140 IHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + +   G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPISSLIELQNGAKPVAMLTGLPEQ-------HYLLSGSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRAIAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESMTHTAV 714


>gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|294840502|ref|ZP_06785185.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6014059]
 gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056]
 gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059]
 gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 739

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 223/610 (36%), Positives = 340/610 (55%), Gaps = 67/610 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 13  SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 72

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 73  DVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 132 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 192 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 252 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 306

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 307 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 366 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE---IKECLD 489
                           + E+Q  AILEL+L  L  L   +IR+E + L  +   I+E L+
Sbjct: 413 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 456

Query: 490 ILSS-RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
              S ++ ++G +K++     DE    RR+ IV     + ++++D +  E + V +S  G
Sbjct: 457 NPESLKNLIIGELKEDAKKFGDE----RRSPIVARAEAVQIKEQDLMPAETVTVVLSEAG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +        +  R  D      +  T+  V F    G  Y      L
Sbjct: 513 WV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYA-----L 559

Query: 607 PIGS-PQARG 615
           PI + P ARG
Sbjct: 560 PISNLPSARG 569


>gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Thiomonas sp. 3As]
          Length = 777

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 250/773 (32%), Positives = 388/773 (50%), Gaps = 81/773 (10%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+E   +  D   E    S+++ D  + +YL YAI+V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+G++HPHG+ A YDAL R++Q+++ R  LI+GQGNFGS
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++   T DF PNYDGS  EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT IP HNL EV   CVA++ NP ++L   + ++ GPDF TG  +I     I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------- 291
            AYA GRGS+ +R    +E+ +  + Q+V+ E+P+  +   +LE+I EL   K       
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 292 ----------RIVDIAD-LRDESDRQ-GYRVVIELKRGASADV--ILNQLYRYTSLQSLF 337
                      ++++ D +RDES R+   R+V E  R +  D    +N L   TSL++  
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFE-PRSSRIDQAEFVNTLLARTSLETSV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            +N+V +    KP +  L+ IL+ +VA+R + V RR+K+ L +   R H+L G    + N
Sbjct: 360 PINLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+  IR S +P  A   LM R                            L+E+Q   
Sbjct: 420 LDEVIETIRNSDDPRPA---LMAR--------------------------FDLTELQADD 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL +L  L    I  EL +   E  E   +L+    +   I  E+ +   +    R
Sbjct: 451 ILDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTRRIISEIEADAKQFGDDR 510

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  +V E + V VS  G++        R Q+  G   S +  +  D 
Sbjct: 511 RT-LIQAEQRAVAEVKVVDEAVTVIVSQKGWL--------RTQKGHGLVLSALTFKPGDA 561

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   +   ++   S G  Y   V  LP G  +  G+ + + + L  G +    +  
Sbjct: 562 LYATFECRSVDPLVVLGSDGRAYSIDVADLPGG--RGDGQPVTSFIELAPGTQALHYL-- 617

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETC- 690
               +      ++  T  G     ++ D +   R+GK  M L+      R  +L ++   
Sbjct: 618 ----AGARTTALLLWTAQGFGFVTRIGDALSRQRAGKTFMTLEDGDVPQRPLVLGIDVGD 673

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +    + L +  G+ + +  + ++      S G RG++L + D   ++  + H
Sbjct: 674 SPTGRLALLSTGGRLLIYAAAEVKAL----SRGGRGVTLMEQDAKEALLSIAH 722


>gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 745

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 239/714 (33%), Positives = 380/714 (53%), Gaps = 72/714 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   ++ K AR  G
Sbjct: 10  SVAEFSERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTARFKKSARTVG 69

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GK+HPHG++A Y+A+  MAQ +S R   I+GQGN+G+ D DP   AA RYTE +L +
Sbjct: 70  DVLGKFHPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPD-DPKSFAAMRYTESKLSR 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL ++ + TV++  N+DGS QEP  L A+ PN+L+NG  GIAVGM TN+P HNL E
Sbjct: 129 YSDLLLSEINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTNVPPHNLTE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           VV  C+A++D P +DLD +M+IIR PD+PT A I+     ++  Y TG GS+ +R +   
Sbjct: 189 VVSACIALLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSVKMRAIYQK 248

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           EK +     IV+  +P+Q + A ++ +IA  +R K++  + D+RDESD +    ++ + R
Sbjct: 249 EKGN-----IVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENPTRIVIIPR 303

Query: 317 G--ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                 DV++  L+  T L+  + VNM  + LNG KP   +LI +LK ++++R +VV+ R
Sbjct: 304 SNRVDVDVLMLHLFATTELEKSYRVNMNVIGLNG-KPGVLSLIPMLKEWLSYRMKVVINR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             Y L+K   R H+L GL IA  N+DEV+ IIR    P+                     
Sbjct: 363 LTYRLDKILVRLHILKGLLIAFLNIDEVIAIIREHDKPKLV------------------- 403

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LID             LS++Q  AILEL+L  L  L    I+ E   L +E ++   +LS
Sbjct: 404 LIDH----------FKLSDIQVEAILELKLRYLAKLEEIKIQAEQQDLALEKEKLKLLLS 453

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           S  RL  +IK+EL ++  +    RR+ I   V       ++D    E++ V +S  G+V 
Sbjct: 454 SDLRLKILIKKELKAIIKDFGDERRSNIKRNVNTAQAFSEDDLAPAENITVVLSEKGWV- 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS----THTSVLFFSSLGFVYKEKVWR 605
                      R  KG S           D ++ S    ++  V+F  S G  Y   +  
Sbjct: 513 -----------RSAKGYSIDPNTLNYKAGDSYLTSVKGKSNKPVIFIDSTGRSY--SLLA 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
             + S + +G+ L   LS     R   ++     ++S N   ++ A+  G      + D 
Sbjct: 560 NSLSSARGQGEPLTGKLSPPSEARFVDVI---MGKASQN---ILLASNIGYGFIATIGDL 613

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFA 717
           +   ++GK    L    +++ +      ++  I L T  G+ + FPIS + + +
Sbjct: 614 LSSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPILS 667


>gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275]
          Length = 1278

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 242/749 (32%), Positives = 373/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESLTHTAV 714


>gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902]
 gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945]
 gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136]
          Length = 765

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N + +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 260 RVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 471 QGRLNILLSDENEKRKLIIKEIQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 526

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 527 ILSEKGWIR----------SRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 628 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIG 687

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 688 ELKIMA--KGKGLQIIGLNAGESMTHTAV 714


>gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
 gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
          Length = 773

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 255/734 (34%), Positives = 382/734 (52%), Gaps = 73/734 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M +MG+  N K VK AR+ 
Sbjct: 20  LTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDGSF+EP VL AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLGEIDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM+ + GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AGAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
             +  + Q+V+TE+P       +LE+I E +  K                  ++ + D +
Sbjct: 260 DLARGQWQLVITELPPNTAAQKVLEEIEEQINPKIKLGKKALTPEQLQTKQTLLGLVDAV 319

Query: 300 RDESDRQG-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +    R+V E K         +N L  +TSL+S   +NMV + G  +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNMVMVGGDGRPRQKGLSE 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 380 ILHEWIAFRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                              L++ Q   ILE+RL +L  L +  I  E
Sbjct: 437 LM--------------------------AAFGLTDRQAEDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S S +   + +E+ +   +    RRT +++       E  +V E
Sbjct: 471 LAELREEKAKLEELLGSESAMKRQLIKEIEADAKQYGDERRT-LIQQEKRATFEARVVDE 529

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 530 PVTVVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLIAWGSNG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V +LP G  +  G  + +++ L  G  +        +++      ++ A+ +G 
Sbjct: 582 RVYSVAVAQLPGG--RGDGVPVTSLIELESGSHLMHYYAASAEQA------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+ +        +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAEQVACLSSGGRLLVFGLDEMKT 693

Query: 716 FAGRNSVGVRGISL 729
            +G    G RG++L
Sbjct: 694 LSG----GGRGVTL 703


>gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
 gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
          Length = 767

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 247/766 (32%), Positives = 382/766 (49%), Gaps = 89/766 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPIGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  +I     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE------------- 286
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E             
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 287 ----LVREKRIVDIAD-LRDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSV 339
               L  +K ++D+ D +RDESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                 DL+                 L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA----------------DLM-------------AAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRD 573
            + E    +L     D    E + + +S  G+++           R G     S    ++
Sbjct: 511 LVEEAGRAVLTQTTAD----EPITLILSEKGWIR----------SRAGHNLDLSQTAFKE 556

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +       T   V+   SLG  Y      +P G  +  G  + +++ L  G +   +
Sbjct: 557 GDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAM 614

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL------SV 687
           +      +     + + +   G     KL+D +   ++GK+ M +DS + +L      + 
Sbjct: 615 L------TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYAS 668

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKG 732
                +  ++L +   + + F I  ++V   GR   G++ +SLA+G
Sbjct: 669 SLINPDCKVVLASSNHRLLAFSIGELKVMPKGR---GLQLMSLAEG 711


>gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
 gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
          Length = 796

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 256/748 (34%), Positives = 378/748 (50%), Gaps = 93/748 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN-------KKYVKCARIS 78
           Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +         K VK ARI 
Sbjct: 31  QRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKPVKSARIV 90

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G++HPHG++++YDA  RMAQD+S R  LI+G GNFGS DGD  AA RYTE RL K 
Sbjct: 91  GDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYTEARLAKI 150

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              LLD++ + TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV
Sbjct: 151 TGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIPSHNLREV 210

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
            D C+A+I +P +    L  +I GPD+P G  I+     I  AY +GRGS+  R    IE
Sbjct: 211 ADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKCRARWKIE 270

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-L 299
             +  + ++V+TE+P  V+   +LE+I EL   K                  ++ + D +
Sbjct: 271 DLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATLLSVLDGV 330

Query: 300 RDESDR-QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLI 355
           RDES +    R+V E K    S   ++  L  +TSL++   +N  M+ L+G +P + +L 
Sbjct: 331 RDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDG-RPTQKSLR 389

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++AFR++ + RR+++ L K  DR H+L G A+ + N+DEV+ IIR +  P+ A  
Sbjct: 390 QMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADEPKAA-- 447

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                           +LS+ Q   ILE+RL +L  L    I  
Sbjct: 448 -LIAR--------------------------FHLSDRQAEDILEIRLRQLARLEAIKIEQ 480

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-- 533
           EL  L  E ++  +IL S S L  ++ +E+ +       PRRT     L+  E +  +  
Sbjct: 481 ELAGLRGEQQKLEEILGSPSALRRLMIKEIEADAKTFADPRRT-----LIQAEKKAVLEV 535

Query: 534 --VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS--GVV-----MRDEDFVTDLFIVS 584
             V E + V VS  G+V        RAQ+     R+  GV+      +  D + D F   
Sbjct: 536 KVVDEPVTVVVSQKGWV--------RAQKGWASERAANGVLPAEYSFKAGDALYDTFECR 587

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES--- 641
           T  ++L F S G VY   V  LP    +  G+ + ++L L  G ++      P   +   
Sbjct: 588 TVDTLLAFGSNGRVYSVAVALLP--GARGDGQPMTSLLELEAGTQLLYYFAGPAPATLLL 645

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           S +  Y   A+      R K         +G+I  +                  +   + 
Sbjct: 646 SSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSPVAGGSGATPWPAATHVACASA 705

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G+ + F IS ++  A     G RG+ L
Sbjct: 706 GGRILTFEISQLKTMA----TGGRGLML 729


>gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 771

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 263/753 (34%), Positives = 380/753 (50%), Gaps = 81/753 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVK 73
           ++++ D  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +N     K VK
Sbjct: 15  ALTLADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGAKPVK 74

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+G+YHPHG+ A YDA+ RMAQD+S R  L++GQGNFGS DGD  AA RYTE 
Sbjct: 75  SARVVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEA 134

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LLD++ + TVDF+PNYDGS QEP  L AR P VL+NG  GIAVG+AT IP+H
Sbjct: 135 RLAPIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATEIPSH 194

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRG 252
           NL EV    V +I +P +  DAL  ++ GPDFP G  I+     I+ AYA+GRGS+ +R 
Sbjct: 195 NLREVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSLKVRA 254

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVD 295
              IE  +  + Q+VV E+P   +   +LE+I EL   K                  ++ 
Sbjct: 255 RWTIEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQTVLA 314

Query: 296 IAD-LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALNGYKPE 350
           + D +RDES +    R+V E K R  S   ++  L   TSL+    VN  MV  +G +P 
Sbjct: 315 VLDAVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADG-RPT 373

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + +L  +L+ ++ FR++ V RRT++ L+K  +R HVL G  + + N+DEV+RIIR S  P
Sbjct: 374 QKSLRQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRESDEP 433

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
             A   L+ R                            LSE Q   IL+LRL +L  L  
Sbjct: 434 RAA---LIAR--------------------------FNLSERQADDILDLRLRQLARLEA 464

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL  L        +IL+S + L   + +E+ +        RRT I E    +  E
Sbjct: 465 IKIEQELKELRETQARLEEILASPAVLKRTLIREIEADAKACGDERRTLIQEERRAVA-E 523

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             +V E + V VS  G+V        RA +     RS +  +  D +   F   +  ++L
Sbjct: 524 IRVVDEPVTVVVSQKGWV--------RALKGHEVERSTLGFKAGDALYATFACRSVDTLL 575

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F   G VY   V  LP G  +  G  +  ++ L  G  I        D +      ++ 
Sbjct: 576 VFGDRGRVYSVAVSSLPGG--RGDGVPITTLIELEAGTAIAHYWAGAADTT------LLL 627

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRF 708
           A   G     K  D     R+GK  + L++ +  L        Q N   L    G+ + +
Sbjct: 628 ANSGGFGLLAKAGDLHGRQRAGKSFLTLEAGERPLEPWAVAAGQTNAACLAAD-GRLLVY 686

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           P+  ++        G RG++L   D    +  V
Sbjct: 687 PLDELK----HQPNGGRGLTLMDVDAATPLVAV 715


>gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 798

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 235/725 (32%), Positives = 365/725 (50%), Gaps = 86/725 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ GE++GKY
Sbjct: 53  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAMRDMGLTAGAKPVKSARVVGEILGKY 112

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 113 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 172

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNLGEV    +A+
Sbjct: 173 IHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGASGIAVGMATEIPPHNLGEVTQAAIAL 232

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LME I  PDF  G  +I     ++  Y TG+GS+ +R    IE+ +  + 
Sbjct: 233 LKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQIYETGKGSVRVRARYEIERLARGQW 292

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 293 RVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 352

Query: 306 QGYRVVIELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K   +  D  +N L   TSL+    +N+V +    +P +  L  IL+ ++ 
Sbjct: 353 HPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLMNLVMMGLDNRPAQKNLKTILQEWLD 412

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ L++   R H+L G      ++DEV+++IR S +P+T           
Sbjct: 413 FRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT----------- 461

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 462 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 503

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 504 QGRLNILLGDENEKKKLIIKEMQADMKQYGDERRTLVEEAGRAVLTQTTAD----EPVTL 559

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   +LG  
Sbjct: 560 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVQPVIILDTLGRT 609

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-FPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G +   ++   PE        + + A   G  
Sbjct: 610 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPAAMLTGVPEQ-------HYLLAGSGGYG 660

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL+D +  N++GK+ M LD+ + +L      +      +  ++L     + + FP+ 
Sbjct: 661 FIAKLADMVSRNKNGKVLMTLDAGETVLPPVPVYASSLINPDCKVVLADSGNRLLAFPLG 720

Query: 712 AIRVF 716
            ++V 
Sbjct: 721 ELKVM 725


>gi|257472156|gb|ACV53919.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 203/256 (79%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 124 TNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            RVVIEL R A+A VI
Sbjct: 244 MRVVIELGRDANAHVI 259


>gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140]
 gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679]
 gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679]
          Length = 767

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+ +               L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLMAVFG-------------LTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
 gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
          Length = 805

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 246/749 (32%), Positives = 372/749 (49%), Gaps = 82/749 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S  D     YL YA++V+ GRA+P   DG KPV RRIL+ M +MG+  + ++VK AR+ G
Sbjct: 69  SPADYAARRYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVG 128

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++++YDA+ RMAQDWSLR  +++GQGNFGS DGD  AA RYTE RL   A
Sbjct: 129 DVIGKYHPHGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIA 188

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL +L + TVD++PNYDG+  EP +L AR P  L+NG  GIAVGMAT IP HNL EV 
Sbjct: 189 ELLLAELDEGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVA 248

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEK 258
           +  V +I NPD   D ++++I GPD+P GA I+     I   Y +GRGS+ +R    IE 
Sbjct: 249 NAAVNLIRNPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIEN 308

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIA----ELVREK------------------RIVDI 296
            +  + ++V+TE+P  V+ A ++ +I      + +EK                    +  
Sbjct: 309 LARGQWKLVITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISE 368

Query: 297 ADLRDESDRQ-GYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVAL--NGYKPERF 352
           + +RDES ++   R+VIE        D ++  L  +TSL++  S+N+  L  NG  P + 
Sbjct: 369 SGVRDESGKEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNG-TPRQA 427

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  ++  +  FR   V RRT++ L  A  R H+L G    + ++D V+++IR S +P+ 
Sbjct: 428 SLYSMIAEWCRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKA 487

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
              +LM                              LSE+Q   ILE+RL +L  L    
Sbjct: 488 ---DLMAH--------------------------FKLSEIQAEDILEIRLRQLARLEGIK 518

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDED 531
           I  EL  L  E      +L S   L   +  E+ +   +    RRT I  +  + M D  
Sbjct: 519 IGEELAKLREEAAGLNKLLDSEEALRACVAAEIEADAKKYGDDRRTLIEADAKVTMSDAK 578

Query: 532 C--IVREDMVVTVSHLGYVK-RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
              IV E   + VS  G+++ R   ++   Q         +  R  D +       T  S
Sbjct: 579 TVSIVDEPTTLIVSKHGWLRSRTGHNIDPTQ---------LTFRSGDSLLACLPCRTVDS 629

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++    LG  Y      +P G  +  G    +++    G ++   +      +S +  Y+
Sbjct: 630 LIILDHLGRAYSISAADIPGG--KGDGVPATSVVDFQDGGKLCLAL-----STSADKRYL 682

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V A   G   R + SDF+   ++GK  + L   +          E +I   TK G+ + F
Sbjct: 683 V-AADGGYGFRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAEGEIACVTKDGRALVF 741

Query: 709 PISAIRVFA-GRNSVGVRGISLAKGDQVI 736
            I  +R+ A GR   G++ I  A G   +
Sbjct: 742 NIEEVRLLAKGR---GLKLIDAAPGKTAL 767


>gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190]
          Length = 780

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 372/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 35  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 94

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 95  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 154

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 155 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 214

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 215 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 274

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N + +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 275 RVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 334

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 335 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 394

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 395 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 443

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 444 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +LS  +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 486 QGRLNILLSDENEKRKLIIKEIQADMKQYGDARRTLVEEAGRAVLTQTTAD----EPITL 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 542 ILSEKGWIR----------SRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRT 591

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 592 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 642

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 643 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIG 702

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 703 ELKIMA--KGKGLQIIGLNAGESMTHTAV 729


>gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
 gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
          Length = 767

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 248/766 (32%), Positives = 382/766 (49%), Gaps = 89/766 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EPV L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  +I     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE------------- 286
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E             
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 287 ----LVREKRIVDIAD-LRDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSV 339
               L  +K ++D+ D +RDESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ L++   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                 DL+                 L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA----------------DLM-------------AAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRD 573
            + E    +L     D    E + + +S  G+++           R G     S    ++
Sbjct: 511 LVEEAGRAVLTQTTAD----EPITLILSEKGWIR----------SRAGHNLDLSQTAFKE 556

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +       T   V+   SLG  Y      +P G  +  G  + +++ L  G +   +
Sbjct: 557 GDRLKQTIEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAM 614

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL------SV 687
           +      +     + + +   G     KL+D I   ++GK+ M +DS + +L      + 
Sbjct: 615 L------TGQPEQHYLLSGSGGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYAS 668

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKG 732
                +  ++L +   + + F I  ++V   GR   G++ +SLA+G
Sbjct: 669 SLINPDCKVVLASSDHRLLAFSIGELKVMPKGR---GLQLMSLAEG 711


>gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
 gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
          Length = 752

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 238/748 (31%), Positives = 370/748 (49%), Gaps = 86/748 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 7   ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGEILGKY 66

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 67  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 126

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 127 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 186

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 187 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 246

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 247 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 306

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 307 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 366

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 367 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 415

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 416 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 457

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 458 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 514 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 563

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 564 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGQPEQHYLLSGSGGYGF 615

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M +DS + +L      +      +  I+  T   + + FPI  
Sbjct: 616 ITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDCKIIAATNQNRAISFPIGE 675

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +++       G++ I L  G+ +    +
Sbjct: 676 LKIMP--KGKGLQIIGLNAGESMTHTGV 701


>gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
           subunit [uncultured bacterium HF0010_16H03]
          Length = 701

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/673 (32%), Positives = 373/673 (55%), Gaps = 72/673 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS
Sbjct: 1   MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L K +  L+ +L   TVD++PN+DGS  EPV+  ++ P++L+N
Sbjct: 61  QD-DPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLN 119

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTG 236
           G  GIAVGMAT+IP+HN+ EV+D  + +++NP  +++ L++II+GPDF   A +I  +  
Sbjct: 120 GTSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEE 179

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++  Y +GRG    +  +H  K   ++  IV+  +PYQ + + +LE+IA+ + +K+I  +
Sbjct: 180 LEEIYKSGRGG--FKAQAHWVK---EKNNIVINALPYQASGSKILEQIADQMLKKKIPMV 234

Query: 297 ADLRDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERF 352
            DL DE D ++  R+VI LK    +AD ++N L+  T LQ  + VNM  ++L G  P+ F
Sbjct: 235 VDLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQG-GPKVF 293

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L+ ++K ++ FR+  V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+ 
Sbjct: 294 SLVEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPK- 352

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                          KD+                  LS++Q  AILE++L +L  L +  
Sbjct: 353 ---------------KDITK-------------AFKLSDIQANAILEIKLRQLAKLEQIK 384

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDE 530
           +  E ++L  E  E   IL+S++RL  +IK+ELL +KD     R++ I +        +E
Sbjct: 385 LEQERDALLEEQNEIEKILNSKTRLKTLIKKELLEIKDGFGEDRKSPIRQSSDAKVFSEE 444

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTH 586
           D +V E + V +S  G++            R  KG     S +  R ED + D     ++
Sbjct: 445 DTLVTESITVVLSEAGWI------------RSAKGHEIDPSSLAYRGEDKLQDFCQGKSN 492

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNN 645
              +F  S G  Y      LP  S +  G  +   +S + G + I+T++      +  + 
Sbjct: 493 QIAVFLDSNGKAYSLPSHSLP--SARGMGDPITGRVSADSGVKFISTVIG-----NDIDK 545

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQ 704
             ++    +G +  ++ S+ +   +SG+  MKL ++ E+L V    +++  I   + +G+
Sbjct: 546 FMIMNTAGYGYI--SEFSNMVSNKKSGRAFMKLPNKAELLKVIKVREDHVYIAAVSNIGR 603

Query: 705 CVRFPISAIRVFA 717
            + F I  + V  
Sbjct: 604 LLIFKIDELPVLG 616


>gi|257472208|gb|ACV53945.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 155/251 (61%), Positives = 204/251 (81%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE
Sbjct: 9   KSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTE 68

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 69  ARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPP 128

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR 
Sbjct: 129 HQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRA 188

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 189 KAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 248

Query: 313 ELKRGASADVI 323
           E++R A+A+VI
Sbjct: 249 EIRRDANANVI 259


>gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
 gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
          Length = 767

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+ +               L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLMAVFG-------------LTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18]
 gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332]
 gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
          Length = 767

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 370/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18]
 gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1]
 gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
 gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
          Length = 767

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 370/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 478

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/505 (38%), Positives = 304/505 (60%), Gaps = 43/505 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y  GRGSI +R
Sbjct: 188 HNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 311 VIELKRG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           V+  K      D+++N L+  T L+  + V  NM+ L+  +P+   L+ IL  ++ FR  
Sbjct: 303 VVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQVKGLVQILSEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R       
Sbjct: 362 TVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AIL+ +L  L  L    IR E + L  E ++ 
Sbjct: 412 -------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDEL 512
             +L S  RL  ++++   S + E+
Sbjct: 453 EQLLGSERRLNTLLEKRNQSRRREI 477


>gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11]
 gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11]
 gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11]
          Length = 767

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+ +               L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLMAVFG-------------LTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6]
 gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6]
          Length = 774

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 255/757 (33%), Positives = 389/757 (51%), Gaps = 79/757 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK--- 69
           + G  ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +     
Sbjct: 15  DDGGDALTLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMQRMGLAFAGAGG 74

Query: 70  -KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K VKCAR+ G+V+G+YHPHG+ A YDAL RMAQD+S R  L++GQGNFGS DGD  AA 
Sbjct: 75  AKPVKCARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAM 134

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  LLD++ + T+DF PNYDGS +EP +L AR P VL+NG  GIAVG+AT
Sbjct: 135 RYTEARLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVLLNGASGIAVGLAT 194

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
            +P+HNL EV    VA+I +  +  + L  ++  PD+P G  +I   T I+ AY TGRGS
Sbjct: 195 EVPSHNLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSETDIREAYRTGRGS 254

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK---------------- 291
           + +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K                
Sbjct: 255 LKVRARWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKAGKKALSTEQVQNK 314

Query: 292 -RIVDIAD-LRDESDRQGY-RVVIELK-RGASADVILNQLYRYTSLQSLFSVN--MVALN 345
             ++ + D +RDES++    R+V E + R      ++  L  +TSL+    +N  MV  +
Sbjct: 315 ALLLSVLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLECSAPINLTMVGAD 374

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           G +P + +L  IL  ++ FR+  V RRT++ L +  DR HVL G  + + N+DEV+RIIR
Sbjct: 375 G-RPTQKSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLVLLNIDEVIRIIR 433

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S  P+ A   L+ R                            LS+ Q   ILE+RL +L
Sbjct: 434 ESDEPKAA---LIAR--------------------------FALSDRQAEDILEIRLRQL 464

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L    I  EL  L  E  +  DIL++   L  ++ +E+ +        RRT +++   
Sbjct: 465 ARLEAIRIEQELAELRTEQGKLDDILANPGTLRRLLIREIEADAKAHGDARRT-LIQAEK 523

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
               E  +V E + + VS  G+V        RA+   G   +G   +  D +   F   T
Sbjct: 524 RAVVEVKVVDEPVTLVVSQKGWV--------RARTGHGHDPAGFAFKAGDGLYGTFECRT 575

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
             +++   S G VY   V  L    P ARG   + I SL + E  + I+ +    +S   
Sbjct: 576 VDALVVLGSDGRVYSVPVNTL----PGARGDG-VPITSLIELEAGSQILHYIAGSASTP- 629

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQ 704
             ++ A   G     ++ D I   + GK  + L+  +  L  +    +   +   +  G+
Sbjct: 630 --LLLAHSGGTGLLAQIGDLISRQKGGKAFLTLEPSERCLPPLPVALEHRQVACLSSSGR 687

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            + F +  ++    R   G RG+ L   D+  ++A V
Sbjct: 688 LLVFGLDELK----RQPNGGRGLMLMDLDEADALAAV 720


>gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
          Length = 767

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
 gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
          Length = 765

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 253/800 (31%), Positives = 399/800 (49%), Gaps = 92/800 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++++    + +YL YA++V+ GRA+P ++DG KPV RRILF M  MG+    K VK AR+
Sbjct: 13  TLNLAQYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLTHGAKPVKSARV 72

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL  
Sbjct: 73  VGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTP 132

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL ++ + TVDF PNYDG+F+EP  L AR P VL+NG  GIAVGMAT IP+HNLGE
Sbjct: 133 LAELLLSEINQGTVDFIPNYDGAFEEPESLPARLPMVLLNGASGIAVGMATEIPSHNLGE 192

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    VA++ NP +    L   I  PDF  GA +I     I   Y TG+GSI +R    +
Sbjct: 193 VAQAAVALLKNPALTTADLHHHIPAPDFAGGAHIITPAKDIAQIYETGKGSIRVRARYDV 252

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD- 298
           EK +  + ++VV+E+P   + A +L +I E                 L  +K ++D+ + 
Sbjct: 253 EKLARGQWRVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLLEK 312

Query: 299 LRDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD     R+V E K      +  +N L   TS++   SVN+V +    +P +  L 
Sbjct: 313 VRDESDGEHPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVSVNLVMMGLDNRPAQKNLK 372

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++ +R   V RR ++ L+    R H+L G  IA  ++D+V+++IR +  P   + 
Sbjct: 373 TILQEWLDYRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHIDQVIKVIREADEP---KP 429

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR---LARLTGLGRDD 472
           ELM                              L+E+Q   ILE+R   LARL G+  + 
Sbjct: 430 ELM--------------------------AAFQLTEIQAEDILEIRLRQLARLEGIKIER 463

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
             NEL      +K  L   + + +L  IIK E+ +   +    RRT +VE          
Sbjct: 464 ELNELREEAGSLKTLLGDENEKRKL--IIK-EIQADAKQFGDARRT-LVEAAERATLTQT 519

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S  G++        RA+   G   + +  ++ D +  +    T   V+ +
Sbjct: 520 TADEPITLILSQQGWL--------RARAGHGVDAAQIAFKEGDALQQVLETRTVQPVVVW 571

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      +P G  +  G  + +++ L     +  ++    D+      Y + + 
Sbjct: 572 DSHGRSYTLDAAEIPKG--RGDGVPIASLIELPSQASVVALLAGAADD------YYLLSG 623

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCV 706
            HG     KL D     ++GK  + LD  +  L             ++ I+L +   + +
Sbjct: 624 CHGYGFIAKLEDLFTRQKAGKAVLTLDDNETALPPVRIANDWLIAPDSRIVLASANKRLL 683

Query: 707 RFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            FP+S +++ A GR   G++ I L+ GD  +++A  L ++        Y  H+  +R  I
Sbjct: 684 AFPVSEMKIMAKGR---GLQLIKLSDGD-TLALASALTSE-------HYTLHIIGKRGAI 732

Query: 766 SGDTEEITSLKNDSSVEGNI 785
             +T  I  +    + +G +
Sbjct: 733 HQETLRIADIAGKRAGKGKL 752


>gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 767

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 371/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+ +               L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLMAVFG-------------LTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523]
          Length = 741

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 224/633 (35%), Positives = 351/633 (55%), Gaps = 80/633 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  PD  ++ ++EII  PD+P GA +I  +  I   Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVI-EL 314
           +    +   +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  R+V+   
Sbjct: 251 D----NHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               +   I+  L   T L+  F V  NM+ L+  +P+   L+ +LK ++ +R+  + RR
Sbjct: 307 TTKKNIKKIIGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNLLDVLKQWLEYRKNTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R            
Sbjct: 366 LQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSD---ELQTR------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 411 --------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+E   +  +    RR++++  E    +E++D +  E + + +S  G++  
Sbjct: 457 SEVKFRNLMKKEFKQILADFGDSRRSKVIAAEKAQALEEKDLMPSERVTIILSKAGWI-- 514

Query: 551 VPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS---VLFFSSLGFVYKEKV 603
                     R  KG     +G+  + ED     F+V+T  S   ++FFS LG  Y   V
Sbjct: 515 ----------RCAKGENIDPAGLSYKPED---KPFLVTTGNSNIKLVFFSKLGKAYSMYV 561

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            +L    P ARG           GE ITT +P 
Sbjct: 562 DKL----PSARG----------YGEHITTYIPL 580


>gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
          Length = 768

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 242/750 (32%), Positives = 371/750 (49%), Gaps = 89/750 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK + G  
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 264 EQIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD- 304
            +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD 
Sbjct: 262 RRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDG 321

Query: 305 RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
               R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++
Sbjct: 322 EHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWL 381

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+           
Sbjct: 382 DFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA---------- 431

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                 DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  
Sbjct: 432 ------DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELRE 472

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMV 539
           E      +L   +    +I +E+ +   +    RRT + E    +L     D    E + 
Sbjct: 473 EQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPIT 528

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + +S  G+++           R G     S    ++ D +       T   V+   S G 
Sbjct: 529 LILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGR 578

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGN 656
            Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G 
Sbjct: 579 TYSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGY 629

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPI 710
               KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI
Sbjct: 630 GFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPI 689

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             +++ A     G++ I L  G+ +   A+
Sbjct: 690 GELKIMA--KGKGLQIIGLNAGESMTHTAV 717


>gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8]
 gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8]
          Length = 761

 Score =  337 bits (864), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 234/743 (31%), Positives = 383/743 (51%), Gaps = 82/743 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   ++ ++ EE     +V I +  + +YL YA++V+ GRA+P + DG KPV RRIL+ M
Sbjct: 1   MDTSMLENNNEE----NAVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G V+G YHPHG+++ Y+A  R+AQD++LR  LI+GQGNFGS 
Sbjct: 57  KEMGLVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF+ NYDG+FQEPV+L AR P +L+NG  
Sbjct: 117 DGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT I  HN+ E+ +  + ++DNP+      M+ + GPDFP G  ++ +T  I +
Sbjct: 177 GIAVGMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADILS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-----REKRIV 294
            Y TGRGS+ +R    +E  +  + +I++ E+P+ V+   + ++I  +      ++K+ +
Sbjct: 237 TYETGRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKTI 296

Query: 295 D------------IADLRDESDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNM 341
           D            + D      ++  R++IE K    S+D ++  L  +TS++    VNM
Sbjct: 297 DQDQLLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNM 356

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  +I ILK ++AFR  VV RR ++ L+K   R H+L G  IA  ++DEV
Sbjct: 357 VMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEV 416

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +++IR S  P+T                DLI                 LSE+Q   ILE+
Sbjct: 417 IKVIRNSDEPKT----------------DLI-------------AAFQLSEIQAEDILEI 447

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E      IL S ++L  +  +E+    ++    RRT I
Sbjct: 448 RLRQLARLEGFKIEKELKDLREEADGLQTILGSDTKLRRLTAKEIKQDAEKYGDDRRTLI 507

Query: 521 -----VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                V+G      +  +V E + + +S  G++        RA++  G  R  +  +  D
Sbjct: 508 EPVERVQG----GQKAFVVDEPVTILLSKNGWI--------RARQGHGVERDAISWKAGD 555

Query: 576 FVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
             ++  ++ T T+  ++   S G  Y      +P G  +  G  L +I+ +  G ++   
Sbjct: 556 --SEFAVIETRTTLPIVLLDSNGRCYAFDASTVPGG--KGDGIPLSSIIEVQNGAKLVHA 611

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   +D+        +FAT +       L   +   ++GK  MK + +  IL        
Sbjct: 612 LSGKDDDR------YLFATSNSYGFIAPLKGLVARPKAGKAFMKPEGKATILPPLALDDR 665

Query: 694 NDILLTTKLGQCVRFPISAIRVF 716
             +++T+   + + F ++ +  +
Sbjct: 666 THLVVTSSENKLLVFAVTEMNEY 688


>gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 767

 Score =  337 bits (863), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 369/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+   Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+ +               L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLMAVFG-------------LTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
 gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
          Length = 767

 Score =  336 bits (862), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 358/713 (50%), Gaps = 81/713 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  +I     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE------------- 286
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E             
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 287 ----LVREKRIVDIAD-LRDESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSV 339
               L  +K ++D+ D +RDESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                 DL+                 L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA----------------DLM-------------AAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    ++ +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLMIKEMQADMKQYGDARRT 510

Query: 519 RIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRD 573
            + E    +L     D    E + + +S  G+++           R G     S    ++
Sbjct: 511 LVEEAGRAVLTQTTAD----EPITLILSEKGWIR----------SRAGHNLDLSQTAFKE 556

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITT 632
            D +       T   V+   SLG  Y      +P G  +  G  + +++ L  G + I  
Sbjct: 557 GDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPISSLIELQNGAKPIAM 614

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +   PE        + + +   G     KL D +   ++GK+ M +DS + +L
Sbjct: 615 LTGLPEQ-------HYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVL 660


>gi|325068644|ref|ZP_08127317.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 373

 Score =  336 bits (862), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 175/358 (48%), Positives = 240/358 (67%), Gaps = 2/358 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +VK +
Sbjct: 17  IVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGLRPDRPHVKSS 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D PAA RYTE RL
Sbjct: 77  RVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGPAAPRYTEARL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG  GIAVGMATN+P HNL
Sbjct: 136 AASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVGMATNMPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY TGRG  + R  +H
Sbjct: 196 VEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIVGLDGIREAYRTGRGKFLTRATAH 255

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314
           +E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +DR+ G R+VI +
Sbjct: 256 VESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDVADLTDRKHGTRLVISV 315

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           K G + + +L QLY++T L+  F +N V+L   +P    L  +L+ FV  R  VV RR
Sbjct: 316 KNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLEVFVRHRLTVVTRR 373


>gi|12045056|ref|NP_072866.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|1352714|sp|P47446|PARC_MYCGE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3844802|gb|AAC71422.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|166078896|gb|ABY79514.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 781

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 214/711 (30%), Positives = 353/711 (49%), Gaps = 45/711 (6%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++    Y K AR  GE+MGKYHP
Sbjct: 20  SFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKSARAVGEIMGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IYDA+ RM+Q W      +   GN GSVDGD  AA RYTE RL      LL D+ 
Sbjct: 80  HGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETRLSLYGFELLKDID 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K  V F  N+D S +EP VL    PN+ +NG  GIA G ATNI  HN  E++D     ID
Sbjct: 140 KKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHNTNELLDSLCLRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
            P+ +L  +++I++GPDFPTG  +     + + Y  G+G  +I+    + K   +  QI 
Sbjct: 200 QPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFIIQAKYEVNK---NLNQIE 256

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +T+IPY+  KA ++++I E++ + ++  I  + D SDR G R++I+ K    A+ I+  L
Sbjct: 257 ITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIKHKDFLPAEKIMAFL 316

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           +++T LQ  F++N   +    P +  L+  L  F+ F  E+++ + KY L  A  R  ++
Sbjct: 317 FKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELIINKAKYELELASKRLEII 376

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
           +GL  A++ +D+++++IR + +   AR +                LID+  +T       
Sbjct: 377 LGLIKAISIIDKIIKLIRSAVDKSDAREK----------------LIDNFKFTFN----- 415

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
                Q  AI+ LRL +LT     ++  E N L   +     +++S      ++K++   
Sbjct: 416 -----QAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEG 470

Query: 508 VKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
            K +    RR++I  G ++   +E+ + I  +   V ++  G   +   +         K
Sbjct: 471 YKKQFHQQRRSQIC-GFINQKKVEESELIENKTYGVLITKAGNYHKFESNQLLKSTTDFK 529

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
             S  ++  +        ++    +   +SLG +    V++L   S       +     L
Sbjct: 530 SESDTIIFAQ-------TIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPIL 582

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            + E I     F    +S N   +V  +K G V+R  L+          + + L  +D +
Sbjct: 583 LEYETIV----FVGTMNSVNQPILVLTSKLGMVKRIDLTKLNIKPLKATLCISLRDKDHL 638

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +S      +  I L +       F  + I + + +  +GV+G+ L   DQ+
Sbjct: 639 VSAFLQQDDKLICLVSDHNYYTVFHTNEIPLISSK-GMGVKGMKLKLEDQI 688


>gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035]
 gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035]
          Length = 767

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 241/749 (32%), Positives = 369/749 (49%), Gaps = 88/749 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV++ IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKAIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   S G  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNV 657
           Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G  
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGGYG 629

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FPI 
Sbjct: 630 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +++ A     G++ I L  G+ +   A+
Sbjct: 690 ELKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|166214662|ref|ZP_02240697.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166204152|gb|EDR48632.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
          Length = 265

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/258 (61%), Positives = 200/258 (77%), Gaps = 1/258 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247

Query: 256 IEKTSGD-REQIVVTEIP 272
           +E  +   RE I+V EIP
Sbjct: 248 VEADAKTGRETIIVHEIP 265


>gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
 gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
          Length = 750

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 249/754 (33%), Positives = 387/754 (51%), Gaps = 76/754 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  +  +S+ +  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++ +  + KY
Sbjct: 8   EEGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA R
Sbjct: 68  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPD-DPKSFAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+
Sbjct: 127 YTEARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATD 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSI 248
           IP HN+ EVVD    ++ +P   +  LM  +  PDFPT A I+  +  +   Y +GRGS+
Sbjct: 187 IPPHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSV 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG   +E+ +     +VVT +PYQV+ A +LE+IA  ++ K++  +ADLRDES  +  
Sbjct: 247 KLRGRYTLEEGN-----VVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETP 301

Query: 309 RVVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAF 364
             ++ + R    DV  ++  L+  T L+    VN+  + L+G +P    L  IL  ++ F
Sbjct: 302 TRLVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDG-RPRVMALNAILDEWLRF 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR ++ L K  DR H+L GL  A  N+DEV+RIIR    P+TA           
Sbjct: 361 RRATVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTA----------- 409

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                LI+                LSE Q  AILELRL  L  L    IR E + L  E 
Sbjct: 410 -----LIE-------------AFGLSERQAEAILELRLRHLAKLEEFKIRGEQDELLAER 451

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
           +   ++L + + L  +I++EL    D     RR  +VE      + + + I  + + V +
Sbjct: 452 ERLKELLGNDAALTDLIERELRQDADGYGDARRAPLVERGEAKALSEVELIGADPITVVL 511

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           S  G++            R  KG     +G+  +  D         ++  ++     G  
Sbjct: 512 SEKGWI------------RSAKGHEIDPAGLSYKAGDRFHLAARGKSNQPLVLLDDAGRS 559

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIM-PFPEDESSWNNLYVVFATKHGNV 657
           Y      LP  S +++G+ +   ++   G R+  +M   PE          + A+  G  
Sbjct: 560 YTLTAHNLP--SARSQGEPITGRINPGAGARMVGVMLDVPEAR-------YLLASDGGYG 610

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              +L D I  +++GK A+ +     +L      +  D  I + +  G+ + FP+  + V
Sbjct: 611 FIARLDDLIGKSKAGKAALSVPKGCNVLPPVAVPEGEDTRIAVVSNEGRLLVFPLEQLPV 670

Query: 716 FA---GRNSVGVRGISLAKGDQVISMAIVLHADA 746
            A   G   + + G   A  ++ +    +L A A
Sbjct: 671 MAKGKGNKMIDIPGARAANREEFVRDLAMLPAGA 704


>gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
 gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
          Length = 769

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 241/741 (32%), Positives = 371/741 (50%), Gaps = 88/741 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 23  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 83  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 263 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T           
Sbjct: 383 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT----------- 431

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 432 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 473

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 474 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 529

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 530 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 579

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 580 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGQPEQHYLLSGSGGYGF 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M +DS + +L      +      +  I+L +   + + F I  
Sbjct: 632 ITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDCKIVLASSDHRLLAFSIGE 691

Query: 713 IRVFA-GRNSVGVRGISLAKG 732
           ++V   GR   G++ +SL +G
Sbjct: 692 LKVMPKGR---GLQLMSLTEG 709


>gi|160892780|ref|ZP_02073570.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
 gi|156865821|gb|EDO59252.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
          Length = 759

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 236/755 (31%), Positives = 377/755 (49%), Gaps = 63/755 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + KCA
Sbjct: 5   ILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLAGS-DKPHRKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFGSVDG   AA RYTE R+
Sbjct: 64  RIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYTEARI 123

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K      + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIPTHN
Sbjct: 124 SKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGV 253
           LGEV+D  V  +++P++ L+ L+++++GPDF TG +I   +  +   Y TG G I +RG 
Sbjct: 184 LGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIKVRGK 243

Query: 254 SHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             I      R+ I VTEIP+ +    A  L+ +AEL R + +  + D+ D  D+ G  + 
Sbjct: 244 VEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKNGECLC 303

Query: 312 IELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           I++K+G + +    I+N LY+   L+  F VN+  +   KPE   L  IL  +  F+  +
Sbjct: 304 IDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGKPEVMGLRRILSIYTDFKYGL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
              +   LL    +   +  GL  AV  +D ++ I+R S     A+  LM          
Sbjct: 364 YNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHG-------- 415

Query: 429 DLIDLIDDSSYTIGSDGT------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                 D S+ T    G+      +  +E Q  AIL +RL +L GL  + ++ EL     
Sbjct: 416 ------DTSNITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEK 469

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            IK+   +L S+S +   +  ++L +K++   PR+T I +    +  +   V  ++ V +
Sbjct: 470 LIKKYSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVETEVAVLL 529

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
               Y+K V  ++Y   +            D+D+    F       V  F+    +Y  K
Sbjct: 530 DRFYYIKVVDANLYDKNK---------AQIDKDYRFS-FKCKNTERVGVFADNNQMYMIK 579

Query: 603 VWRL------PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY--------- 647
           V  +           +  G  LI  LS    ++   I  F     + N LY         
Sbjct: 580 VADIIKLQAKKNTGKKGNGSGLIGRLS----DKGIQIFEFCNMNGNENILYMCCLEQIID 635

Query: 648 --VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++F TKHG  +    +++  +    K+       ++I+ +     E+ I++ + LG  
Sbjct: 636 KNLLFVTKHGQAKLVPGNNYDVLR---KMIAASKQEEDIIFIHDAEMEDFIVVKSMLGYY 692

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            R  IS I V  G+ +  +R +++   D++  +A+
Sbjct: 693 ARIQISEIPV-KGKGAGCIRLVNITDDDEIEEVAV 726


>gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 401

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/393 (44%), Positives = 257/393 (65%), Gaps = 14/393 (3%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 75  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 133

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +
Sbjct: 134 SELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAI 193

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +I+ P   LD L++I++GPD+PT A +I+ R  I+  Y  GRGS+ +R V   E  +  
Sbjct: 194 TLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWTKEDGA-- 251

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+
Sbjct: 252 ---VVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308

Query: 323 --ILNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++AFR + V RR  Y L 
Sbjct: 309 EQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILTEWLAFRRDTVRRRLNYRLE 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
           K   R H+L GL +A  N+DEV+ IIR    P+
Sbjct: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK 400


>gi|119444319|gb|ABL75402.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 153/250 (61%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPD+ +  LME+I GPDFPT   ILGR+GI+ AY T
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDMTISELMEVIPGPDFPTAGQILGRSGIRKAYET 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|257472172|gb|ACV53927.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472174|gb|ACV53928.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 204/256 (79%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 124 TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIE++R A+A VI
Sbjct: 244 MRIVIEIRRDANAHVI 259


>gi|313192119|emb|CBX19919.1| gyrase A [Clostridium perfringens]
          Length = 289

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/289 (55%), Positives = 220/289 (76%), Gaps = 1/289 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 2   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 61

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 62  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 121

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 122 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 181 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQ 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+
Sbjct: 241 KDVITRRTRFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAK 289


>gi|257472170|gb|ACV53926.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 203/256 (79%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA
Sbjct: 4   DKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 64  MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 123

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 124 TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGS 183

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 184 ITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 243

Query: 308 YRVVIELKRGASADVI 323
            R+VIE++R A+A VI
Sbjct: 244 MRIVIEIRRDANAHVI 259


>gi|313192091|emb|CBX19905.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 160/288 (55%), Positives = 219/288 (76%), Gaps = 1/288 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 2   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 61

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 62  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 121

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 122 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  +V F+
Sbjct: 181 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYVNFQ 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A
Sbjct: 241 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 288


>gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
 gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
          Length = 791

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 246/745 (33%), Positives = 378/745 (50%), Gaps = 79/745 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ GE++GKY
Sbjct: 44  ERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVVGEILGKY 103

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 104 HPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 163

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +   TVDF PNYDG+F EP +L AR P VL+NG  GIAVG+AT IP HNL EV    VA+
Sbjct: 164 IDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEVAGAAVAL 223

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +DNP++    LM  + GPDFP G  +I     I  AY +GRGS+ +R    +EK +  + 
Sbjct: 224 LDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVEKLARGQW 283

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK-----------------RIVDIAD-LRDESDRQ 306
           +++VTE+P   +   +L +I E    K                  ++ + D +RDESD  
Sbjct: 284 RVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRVRDESDSD 343

Query: 307 G-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V E K      D  +N L   TSL+   ++N  M+ L+G +P +  L  IL  ++
Sbjct: 344 SPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDG-RPGQKGLKPILAEWL 402

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFR   V RR ++ L++   R H+L G  IA  ++DEV+R+IR S  P+           
Sbjct: 403 AFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKP---------- 452

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                 DLI                 L+EVQ   ILE+RL +L  L    +  EL+ L  
Sbjct: 453 ------DLIK-------------AFGLTEVQAEDILEIRLRQLARLEGFKLEKELSELRE 493

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E +    +L++   L G+++ E+ +   +    RR+ I      +  +  I  E + + +
Sbjct: 494 EREGLRHLLATPDALTGLMRDEIQADAAKYGDARRSEIKAAERAVLTQ-TIADEPVTIIL 552

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++        RA+       S +  +D D +  +    T   V+   S G  Y   
Sbjct: 553 SQKGWI--------RARVGHNVDLSALSFKDGDALATVVETRTVWPVIVLDSKGRAYTVD 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P G  +  G  + +++ L  G +   ++  P      ++   V A   G     K+
Sbjct: 605 PAVVPTG--RGDGVPVASLVELQDGAKPAQLLSGP------DSTRFVLANSGGYGFIAKI 656

Query: 663 SDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKL--GQCVRFPISAIRVFA 717
            D     ++GK  M L+  + +L+   V    + + + L      G+ + FP   ++  A
Sbjct: 657 GDMAGRVKAGKAFMTLEDGESVLAPLHVPASAKLDALRLVAAADNGRLLAFPAGELKELA 716

Query: 718 -GRNSVGVRGISLAKGDQVISMAIV 741
            GR   G+  + L +G+ + ++ +V
Sbjct: 717 KGR---GLMLMQLGEGEALTAIGLV 738


>gi|119444309|gb|ABL75397.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444311|gb|ABL75398.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444313|gb|ABL75399.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444317|gb|ABL75401.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444323|gb|ABL75404.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444331|gb|ABL75408.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444333|gb|ABL75409.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444337|gb|ABL75411.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|119444339|gb|ABL75412.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 153/250 (61%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|119444321|gb|ABL75403.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 154/250 (61%), Positives = 199/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITISELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + I++TS  +E+IVVTEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIDQTSSGKERIVVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|119444327|gb|ABL75406.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 153/250 (61%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
 gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
          Length = 650

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 327/609 (53%), Gaps = 65/609 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++ +    K  K 
Sbjct: 11  GFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
            R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE
Sbjct: 71  VRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+    + ++DNP+  + AL + IRGPD+PT A +I   + ++N Y TG GS+  R
Sbjct: 190 HNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI--VDIADLRDESDRQGYR 309
              H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +D   +RDESD +   
Sbjct: 250 ATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPV 304

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFR 365
            ++   R    DV  ++  L+  T L+    VN+  + L+G +P+   L  +L  +++FR
Sbjct: 305 RIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDG-RPQVKPLKQLLSEWLSFR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR KY L K   R H+L GL IA  NLD+V+ IIR    P+     L+ R     
Sbjct: 364 SDTVTRRLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPKPV---LIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ QT  IL+ +L +L  L    IR+E ++L  E  
Sbjct: 416 ---------------------FGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERD 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           E   IL S  +L  +IK ELL+        RR  +V  +    +++ + +  E M V +S
Sbjct: 455 EINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFV 598
             G++            R  KG     SG+  R+ D  +  +   STH  V F  S G  
Sbjct: 515 EKGWI------------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTH-QVSFLDSEGRA 561

Query: 599 YKEKVWRLP 607
           Y   V  LP
Sbjct: 562 YSTLVHTLP 570


>gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 768

 Score =  333 bits (854), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 229/687 (33%), Positives = 348/687 (50%), Gaps = 78/687 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 23  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 83  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 263 RVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 383 FRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 431

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 432 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 473

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 474 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 529

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 530 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 579

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 580 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGQPEQHYLLSGSGGYGF 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL 685
             KL+D +   ++GK+ M +DS + +L
Sbjct: 632 ITKLADMVGRVKAGKVVMTVDSGETVL 658


>gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 769

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 242/754 (32%), Positives = 375/754 (49%), Gaps = 88/754 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGQPEQHYLLSGSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M +DS + +L      +      +  I+L +   + + F I  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDCKIVLASSDHRLLAFSIGE 690

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHAD 745
           ++V   GR   G++ +SL  G  +   A++  A+
Sbjct: 691 LKVMPKGR---GLQLMSLTDGASLEHTAVISSAE 721


>gi|119444325|gb|ABL75405.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYEKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+V+E
Sbjct: 241 DRTGMRIVVE 250


>gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 745

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 315/541 (58%), Gaps = 44/541 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   K+ K AR  G
Sbjct: 10  SIAQFSERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAKFKKSARTVG 69

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GK+HPHG++A Y+++  MAQ +S R   I+GQGN+G+ D     AA RYTE +L + 
Sbjct: 70  DVLGKFHPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMRYTESKLSRY 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TV++  N+DGS QEP  L A+ PN+L+NG  GIAVGMAT++P HNL EV
Sbjct: 130 ADLLLLEINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATDVPPHNLIEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIE 257
           V  C+ ++DNP IDLD +M+ I+ PD+PT A I+  +  ++  Y TG GS+ +R V   E
Sbjct: 190 VSACIVLLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSVKMRAVYQKE 249

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKR 316
           K +     IV+  +P+QV+ A ++ +I   +R K++  + D+RDESD +   R+VI L  
Sbjct: 250 KGN-----IVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENPTRIVIILHS 304

Query: 317 G-ASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
                D ++  L+  T L+  + VNM  + L+G KP    LI +LK ++++R +VV  R 
Sbjct: 305 NRFDVDALMLHLFATTELEKNYRVNMNVIGLDG-KPRVLPLIPMLKEWLSYRMQVVTNRL 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
               +K   R H+L GL IA+ N++EV+ +IR    P+                     L
Sbjct: 364 TCRFDKIIVRLHILKGLLIALLNINEVIAVIREYDKPKLV-------------------L 404

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I+             L+ +Q  AILEL+L  L  L    IR E   L +E K+   +LSS
Sbjct: 405 INH----------FKLNTIQAEAILELKLRHLAKLEEVRIRTEQQELVLERKQLELLLSS 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            SRL  +IK+EL  +  +    RR+ I   V       +++ ++ ED+ V +S+ G+V+R
Sbjct: 455 NSRLKSLIKKELKIIIKDFGDERRSNIKSNVNVAQAFSEDNLVLAEDVTVVLSNKGWVRR 514

Query: 551 V 551
           V
Sbjct: 515 V 515


>gi|119444335|gb|ABL75410.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/250 (61%), Positives = 199/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
          Length = 769

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 240/741 (32%), Positives = 370/741 (49%), Gaps = 88/741 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 23  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGEILGKY 82

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 83  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 263 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 383 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 431

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+                 L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 432 -----DLM-------------AAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 473

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                 +L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 474 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTTAD----EPITL 529

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G+++           R G     S    ++ D +       T   V+   SLG  
Sbjct: 530 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 579

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 580 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGQPEQHYLLSGSGGYGF 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M +DS + +L      +      +  I+L +   + + F I  
Sbjct: 632 IAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDCKIVLASSDHRLLAFSIGE 691

Query: 713 IRVFA-GRNSVGVRGISLAKG 732
           ++V   GR   G++ +SL +G
Sbjct: 692 LKVMPKGR---GLQLMSLTEG 709


>gi|75763035|ref|ZP_00742825.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489482|gb|EAO52908.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 531

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 211/548 (38%), Positives = 319/548 (58%), Gaps = 39/548 (7%)

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G   AA R TE  L   A  LL DL K+TV+F    + + +EPVVL A +PN+LVNG  G
Sbjct: 2   GTQAAAMRNTEAPLSPIASELLRDLDKETVEFVSTLNDTSEEPVVLPAAFPNLLVNGSTG 61

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           I+ G AT IP H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY
Sbjct: 62  ISAGYATEIPPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAY 121

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG+G I+IRG + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RD
Sbjct: 122 ETGKGKIIIRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRD 181

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           E+DR G R+V+ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A+
Sbjct: 182 ETDRTGLRIVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAY 241

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  ++EV+ RR++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+       
Sbjct: 242 IGHQKEVITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK------- 294

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                        D+ S   G       +E Q  AI+ L+L RLT      ++ E + L 
Sbjct: 295 -------------DNLSAKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELN 335

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMV 539
            +I E   IL S  RLL +IK +L  VK      RR  I E + +++   E  I +ED++
Sbjct: 336 KKILELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVI 395

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV+  GYVKR     + A      G     M++ D + + F  +T  +VL F+S G   
Sbjct: 396 VTVTKEGYVKRTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYI 450

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNV 657
              V+ +P    +  G+ + NI+SL++ E I   T++P  E+E      ++VF T++G +
Sbjct: 451 YLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFEEEKR----FIVFVTRNGMI 506

Query: 658 RRNKLSDF 665
           ++ +L+ +
Sbjct: 507 KKTELNQY 514


>gi|313192099|emb|CBX19909.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/286 (55%), Positives = 218/286 (76%), Gaps = 1/286 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 3   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 62

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 63  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 122

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 123 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 181

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 182 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 241

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E
Sbjct: 242 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSE 287


>gi|13810773|gb|AAK40031.1|AF272021_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 253

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/252 (60%), Positives = 200/252 (79%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 2   MNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 62  VDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ 
Sbjct: 122 AGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRK 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 182 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 241

Query: 300 RDESDRQGYRVV 311
           RDESDR G R+V
Sbjct: 242 RDESDRTGMRIV 253


>gi|119444329|gb|ABL75407.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/250 (60%), Positives = 199/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G ++VIE
Sbjct: 241 DRTGMKIVIE 250


>gi|313192089|emb|CBX19904.1| gyrase A [Clostridium perfringens]
          Length = 286

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/282 (55%), Positives = 217/282 (76%), Gaps = 1/282 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 3   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 62

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 63  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 122

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 123 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 181

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 182 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQ 241

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S
Sbjct: 242 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 283


>gi|309807645|ref|ZP_07701587.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308169111|gb|EFO71187.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 369

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/356 (46%), Positives = 236/356 (66%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A
Sbjct: 10  IKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTFDKAYKKAA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE RL
Sbjct: 70  KAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAAMRYTESRL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP HNL
Sbjct: 130 SKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPHNL 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG I +R  + 
Sbjct: 190 SEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGRIQVRAKTK 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G  +VIELK
Sbjct: 250 IKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHGLSIVIELK 309

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++   ++
Sbjct: 310 KEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKRRCIK 365


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 198/509 (38%), Positives = 297/509 (58%), Gaps = 43/509 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 277 SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 336

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L  
Sbjct: 337 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLSA 395

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 396 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 455

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 456 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 515

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 516 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 570

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 571 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 629

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 630 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 676

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR+E + L  +     + L 
Sbjct: 677 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 720

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           +   L  +I  EL     +    RR+ IV
Sbjct: 721 NPESLKNLIISELKEDAKKFGDERRSPIV 749


>gi|313192103|emb|CBX19911.1| gyrase A [Clostridium perfringens]
          Length = 282

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/282 (55%), Positives = 217/282 (76%), Gaps = 1/282 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 2   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 61

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 62  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 121

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 122 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 181 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S
Sbjct: 241 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 282


>gi|313192097|emb|CBX19908.1| gyrase A [Clostridium perfringens]
          Length = 285

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/282 (55%), Positives = 217/282 (76%), Gaps = 1/282 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 2   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 61

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 62  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 121

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 122 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 181 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S
Sbjct: 241 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 282


>gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
 gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 208/521 (39%), Positives = 288/521 (55%), Gaps = 59/521 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ GE++GKY
Sbjct: 39  ERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVVGEILGKY 98

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 99  HPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 158

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +   TVDF PNYDG+F+EP +L AR P VL+NG  GIAVG+AT IP HNL EV   CVA+
Sbjct: 159 IDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEVAAACVAL 218

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +D+P++D  ALM+ + GPDFP G  I+     I +AY TG+GS+ +R    +EK +  + 
Sbjct: 219 LDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVEKLARGQW 278

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL------------------RDESDRQ 306
           + +VTE+P   +   +L +I E    K       L                  RDESD +
Sbjct: 279 RAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRVRDESDSE 338

Query: 307 G-YRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V E K      D  +N L   TSL+   S+N  M+ L+G +P +  L  IL  ++
Sbjct: 339 SPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDG-RPGQKGLKPILTEWI 397

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR  + L +   R H+L G  IA  ++DEV+R+IR S  P+           
Sbjct: 398 DFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKP---------- 447

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR---LARLTGLGRDDIRNELNS 479
                 DLI                 L+E+Q   ILE+R   LARL G   +   +EL  
Sbjct: 448 ------DLIK-------------AFGLTEIQAEDILEIRLRQLARLEGFKLEKELSELRE 488

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
               ++  LD   + +RL   I+ E+ +   +    RRT I
Sbjct: 489 EREGLRHVLDTPDALTRL---IRDEIQADAAKYGDKRRTEI 526


>gi|112806708|emb|CAJ28004.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 218

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/218 (69%), Positives = 182/218 (83%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+ M + G  WN+K+VK +RI G+VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAMQEGGYHWNRKHVKSSRIVGDVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+D DPPAA RYTE RL K AH LL+D+ K+TVDF+ NYDG+ QEP
Sbjct: 61  SLRVPLIDGQGNFGSIDADPPAAMRYTESRLTKVAHELLEDIDKETVDFQDNYDGAEQEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNL EV +G +A+IDNP IDL ALMEI+ GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLAEVCNGAMAIIDNPAIDLPALMEIVPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG   IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVEIERRGND 218


>gi|112806700|emb|CAJ28000.1| DNA gyrase subunit A [Mesorhizobium ciceri]
          Length = 218

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRILF   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILFAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|303238190|ref|ZP_07324726.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
 gi|302594236|gb|EFL63948.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
          Length = 727

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 229/737 (31%), Positives = 382/737 (51%), Gaps = 56/737 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+    +  K A + G+
Sbjct: 11  IVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGGR-TKSANVVGQ 68

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
            M K +PHG+ AIY+ + R+ + + +L    ++ +GNFG         AA RYTE +L K
Sbjct: 69  TM-KLNPHGDMAIYETMVRLTRGNDALLHPYVDSKGNFGKQYSRDMHFAAPRYTEVKLDK 127

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  DL KD VDF  NYDG+ +EP +L   +PN+LV+   GIAVGMA+NI + NL E
Sbjct: 128 ICEELFRDLDKDAVDFVDNYDGTMKEPTLLPITFPNILVSANQGIAVGMASNICSFNLNE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V +  +  I+N +I++    + ++ PDF +G  +I     IK  Y TGRGS  +RG    
Sbjct: 188 VCETAIQFINNENIEVS---DYLKAPDFTSGGQLIYKEKDIKEIYNTGRGSFKVRGKYRY 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +K +     I + EIPY     A+++ I ELV+  +I DI D+RDE+D  G +V I+++R
Sbjct: 245 DKENN---CIEIYEIPYTTTTEAIIDSIIELVKNNKIKDILDVRDETDLDGLKVTIDIRR 301

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
               D ++N+LY+ T L+  F  N   L   +P+   + GIL  ++ FR + + R+T + 
Sbjct: 302 NTDPDALMNKLYKLTPLEDSFGCNFNLLINGRPKVLGIKGILANWIEFRVDCIKRQTLFD 361

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           +NK  DR H+LVGL   + ++D+ +R+IR             +   +A  I +L+D    
Sbjct: 362 INKKSDRLHLLVGLKKILLDIDKAIRLIR-------------ETEEDAMVIPNLMD---- 404

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                G D       VQ   I E++L  L      D  +E++ L  EI E  DI  +  +
Sbjct: 405 ---GFGVD------HVQAEFIAEIKLRNLNKEYILDKVSEIDKLEKEIAELKDIYGNDKK 455

Query: 497 LLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +  II ++L  V  +   PRRT I+  E + ++  E  I   ++ + ++   Y+K++PL+
Sbjct: 456 IKKIIVKQLGEVSKKYGKPRRTDILHEEHVEEITQEHFIEDYNLKIFLTDHNYLKKIPLT 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
             R             ++D+D +           +L FS+   VYK +++ +      + 
Sbjct: 516 SLRTSPEHK-------LKDDDSIVQEIETHNKADLLLFSNKQTVYKIRIYEIDDCKASSL 568

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  L N+L L   ERI  I+   + +      Y++FA ++G V +  L  +       K+
Sbjct: 569 GDYLTNLLGLEADERIINIVATDDYKG-----YMIFAFENGKVAKIDLESYATKTNRKKL 623

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD- 733
           A       +I+ ++  T++ +++  + L + + F  S I   + R+S GV+ +   KG  
Sbjct: 624 ANAYSDLSKIIYMQYITEDEELVAFSSLKKVLIFSTSNINPKSTRDSQGVQVLKEKKGSV 683

Query: 734 --QVISMAIVLHADADY 748
              V  ++ V   D DY
Sbjct: 684 MTTVKRLSEVSFKDLDY 700


>gi|119444315|gb|ABL75400.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/250 (60%), Positives = 198/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR SI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRSSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G ++V E
Sbjct: 241 DRTGIKIVFE 250


>gi|112806704|emb|CAJ28002.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 218

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +AVIDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAVIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 197/509 (38%), Positives = 296/509 (58%), Gaps = 43/509 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR  G
Sbjct: 277 SVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVG 336

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA R TE +L  
Sbjct: 337 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRXTEAKLSA 395

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HNL E
Sbjct: 396 YSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLRE 455

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           VV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +R V  I
Sbjct: 456 VVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTI 515

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           EK      +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI L+
Sbjct: 516 EKN-----EIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLR 570

Query: 316 RG-ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                A+ +++ L+  T L+S + V  NM+  +G +P+  ++  IL  ++  R++ V RR
Sbjct: 571 SNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDG-RPQVKSIRRILLEWIEIRKKTVTRR 629

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y LN+   R H+L GL IA  ++D V+RIIR    P    + ++   +N         
Sbjct: 630 LQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP----KPVLMEHFN--------- 676

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           + E+Q  AILEL+L  L  L   +IR+E + L  +     + L 
Sbjct: 677 ----------------IDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLE 720

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           +   L  +I  EL     +    RR+ IV
Sbjct: 721 NPESLKNLIISELKEDAKKFGDERRSPIV 749


>gi|112806702|emb|CAJ28001.1| DNA gyrase subunit A [Mesorhizobium huakuii]
          Length = 218

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|313192113|emb|CBX19916.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 155/279 (55%), Positives = 215/279 (77%), Gaps = 1/279 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 2   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 61

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 62  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 121

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 122 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 181 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ II
Sbjct: 241 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINII 279


>gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae]
          Length = 768

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 239/751 (31%), Positives = 369/751 (49%), Gaps = 91/751 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  +I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAE-----------------LVREKRIVDIAD-LRDESD-R 305
           +++VTE+P   N A +L +I E                 L  +K ++D+ D +RDESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                DL+ +               L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 -----DLMAVFG-------------LTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
                  L   +    +I +E+ +   +    RRT + E    +L     D    E + +
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVEEAGRAVLTQTAAD----EPITL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSL--G 596
            +S  G+++           R G     S    ++ D +    +   H           G
Sbjct: 529 ILSEKGWIR----------SRAGHNLDLSQTAFKEGDRLKQT-LEGPHCFTRRHPRFIRG 577

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHG 655
             Y      +P G  +  G  + +++ L  G + +  +   PE        + + ++  G
Sbjct: 578 RTYSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAMLTGLPEQ-------HYLLSSSGG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL------SVETCTQENDILLTTKLGQCVRFP 709
                KL D +   ++GK+ M  DS + +L      +      +  I+  T   + + FP
Sbjct: 629 YGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFP 688

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           I  +++ A     G++ I L  G+ +   A+
Sbjct: 689 IGELKIMA--KGKGLQIIGLNAGESMTHTAV 717


>gi|112806706|emb|CAJ28003.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 218

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644]
 gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644]
          Length = 906

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 167/346 (48%), Positives = 232/346 (67%), Gaps = 9/346 (2%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM- 61
           E ++   + + + +  VS+ +  ++ YL YA++VI  RA+PD+RDGLKPV RRIL+ M  
Sbjct: 16  ERLLRRAQSQGEVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWA 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            +      ++VK A + GEVM  YHPHG+ +IYDAL RMAQD+SLR  LIEG GNFGS+D
Sbjct: 76  DLKAGATGRFVKSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSID 135

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPAA RYTE RL  AA  LL +L + TV+FR NY  + +EPVVL AR+PN+LVNG  G
Sbjct: 136 GDPPAAMRYTEARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASG 195

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNA 240
           IAVGMAT IP HNL EV +  +A++DNP+I +D L   + GPDFPTG V+L     ++  
Sbjct: 196 IAVGMATTIPPHNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGI 255

Query: 241 YATGRGSIVIRGV--SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           YA G G+I +RG    H E+    +E +V+T IPY V K  ++ KI EL+ + ++  + +
Sbjct: 256 YANGHGTIKLRGTWEPHPER----KEAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVN 311

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           ++D SD +  R+V++L+ GA+A+  +  LY+ TSLQ    VNM  L
Sbjct: 312 VKDLSD-EAIRIVLDLRPGANAEAAMAYLYKNTSLQINHHVNMTCL 356



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 176/421 (41%), Gaps = 79/421 (18%)

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           PER  L  +L  F+ FR EVV+R+ ++ L + R R H+L G  I    LDE +R+IR S 
Sbjct: 421 PERLDLKTMLSHFLDFRMEVVIRKLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASN 480

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
               A  +L  R                            LS +Q  AILE +L RL  L
Sbjct: 481 GKADAAPKLATR--------------------------FGLSALQADAILETKLYRLGKL 514

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---L 525
             D+I  EL       +E   +L   +   G+I+ +L  +     TPRRTRI EG    +
Sbjct: 515 EIDEILRELAERRARAEELRRLLGDEAARKGLIRDDLKRIAKTYGTPRRTRI-EGPAPEV 573

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +  +ED IV ED  V V+  G++KR         +R       + +RD D V  LF    
Sbjct: 574 EFREEDYIVDEDAWVIVTRDGWIKR---------QRSFTDIESIRVRDGDRVGWLFRARA 624

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-------MPFPE 638
             ++   +S G  Y  +V  L + +    G+ +  + SL   ERI  +       +P   
Sbjct: 625 RRTLTVLTSRGMAYTTRVHDLVMTT--GHGEPISKLFSLEDNERIVGVVCHDPRCLPVHA 682

Query: 639 D---------------------ESSWNN-----LYVVFATKHGNVRRNKLSDFIQIN-RS 671
           D                     ESS +N      YVV  T  G   R  L+    ++ R 
Sbjct: 683 DPADHAAPKRQGVLLATAASGEESSSDNSQPQPPYVVVVTAGGKALRFSLAALAAVSTRK 742

Query: 672 GKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           G+  M+ D     DE+++       + ++L T   + +RF ++ I V +G  + GV  I 
Sbjct: 743 GRAVMRPDPDRPNDEVVAALVSNGHDQVMLATTSARVIRFAVTEIPVVSG-PAKGVLAIR 801

Query: 729 L 729
           L
Sbjct: 802 L 802


>gi|313192101|emb|CBX19910.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 154/278 (55%), Positives = 214/278 (76%), Gaps = 1/278 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 3   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 62

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 63  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 122

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 123 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 181

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 182 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 241

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ I
Sbjct: 242 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 279


>gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 781

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 252/736 (34%), Positives = 374/736 (50%), Gaps = 75/736 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV + D     YL YAI V+ GRA+PD++DGLKPV RR+LF M ++G+    K VK AR+
Sbjct: 35  SVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVKSARV 94

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDA+ R+AQ + LR  L++GQGNFGS DGD  AA RYTE RL  
Sbjct: 95  VGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEARLTA 154

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL +LG+ TVDF+PNYDGSF EP  L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 155 IAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSHNLRE 214

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  I++P   LD LME I GPD+P G  +I     I  AYA+GRGS+ +R     
Sbjct: 215 VAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRARYEF 274

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR----------EKRIVDIADL------- 299
           E+ +    Q+V  E+P  V+ A +L +I  L+           E+    +  L       
Sbjct: 275 EEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMASQLDR 334

Query: 300 -RDESDR-QGYRVVIELKRGASADVILNQ----LYRYTSLQSLFSVNMVALN-GYKPERF 352
            RDES +    R+V E    +S+ +  N+    L  +TSL++   +N+VA+    +P + 
Sbjct: 335 ARDESGKDDDVRLVFE---PSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQK 391

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  ++  +  FR   V RRT++ L KA DR H+L G  I   N+DEV+RIIR S +P+ 
Sbjct: 392 SLTDLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPKA 451

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   L+ R                            LS+ Q   ILE+RL +L  L    
Sbjct: 452 A---LIAR--------------------------FTLSDRQAEDILEIRLRQLARLEGIR 482

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-D 531
           I  EL+ L  E +  L +L S + L   + +E+ +  ++    RRT I+        E  
Sbjct: 483 IEQELDKLRGEREGLLKLLGSDALLRRQVIREIKADAEKHGDARRTIILAATTASRSEVA 542

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E + V +S  G+         R ++  G   SGVV +D D         +  S++ 
Sbjct: 543 AVADEPVTVIISEKGWA--------RVRQGHGLDLSGVVFKDGDRAGSAQECRSVDSLVI 594

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            SS G  +   +  LP G  +  G  L + + L  G+    +    +DE       ++FA
Sbjct: 595 ISSEGRAFTVAIASLPDG--RGMGAPLSSFVDLGGGKIAHVLTGRADDE-------LLFA 645

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
              G        D +   ++GK  + ++    IL       ++ +   ++ G+ + FP++
Sbjct: 646 KTSGYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPLRIAGKDHLAALSEDGRLLVFPLA 705

Query: 712 AIRVFAGRNSVGVRGI 727
            ++  A    V + G+
Sbjct: 706 QMKRLASGKGVQIIGL 721


>gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9]
 gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9]
          Length = 760

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 243/757 (32%), Positives = 381/757 (50%), Gaps = 84/757 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRIL+ M +MG+    K VK AR+ GE++GKY
Sbjct: 18  ERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMKEMGLAAGAKPVKSARVVGEILGKY 77

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 78  HPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIADLLLAE 137

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP +L AR P VL+NG  GIAVGMAT IP HNL EV    VA+
Sbjct: 138 IDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGASGIAVGMATEIPPHNLTEVAAAAVAL 197

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           + +P +D   LM  + GPDFP G  +I     I+ AY +GRGS+ +R    +EK +  + 
Sbjct: 198 LKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRAAYESGRGSVRVRAQWEVEKLARGQW 257

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK------------------RIVDIADLRDESD-R 305
           +++V+E+P   +   +L +I +    K                   +  +  +RDESD  
Sbjct: 258 RVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKALSQEQQNLKNLMLSQLDRVRDESDGE 317

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFV 362
              R+V E K    + D  +  L   TS++   S+N  MV ++G +P++  L  IL  ++
Sbjct: 318 HPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSMNLVMVGMDG-RPQQKGLKAILSEWL 376

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FRE  V RR  + L+K   R H+L G  +   +LD V+R+IR S  P+    ELM    
Sbjct: 377 GFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLDAVIRVIRESDEPKP---ELM---- 429

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q   ILE+RL +L  L    +  EL  L  
Sbjct: 430 ----------------------AAFGLSEIQAEDILEIRLRQLARLEGFRLEKELGELRD 467

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E      +L+S      +I +E+ +   +    RR+ +         +  +  E + + +
Sbjct: 468 EAGGLRHLLASDHARQKLIIKEIEADAAKYGDRRRSELKPAEKATLTQ-TVADEPVTLIL 526

Query: 543 SHLGYVK-RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           S  G+++ RV   V  A          +  +D D +  +    T   V+   S G  Y  
Sbjct: 527 SKKGWLRARVGHHVDLAT---------LAFKDGDALAAVLETRTVWPVVVLDSHGRAYTV 577

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +P G  +  G  + +++ + +  ++  ++  PED        V  +  +G V   +
Sbjct: 578 DAADVPTG--RGDGVPVTSLIDVQEQAQVCHMLAAPED----ARFVVAGSGGYGFV--VE 629

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISAIRVFA 717
           + D +   ++GK  + L++ +  L+    T        ++  ++  + + FP S ++  A
Sbjct: 630 MKDMVSRVKAGKAFLTLEAHEIPLAPVPVTAAGLAAGQLVAISQQARALVFPASELKALA 689

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            GR   G+  + L  GD + ++A+V  + A    RIC
Sbjct: 690 KGR---GLMLMQLDDGDTLETLAVVEGSAA----RIC 719


>gi|313192111|emb|CBX19915.1| gyrase A [Clostridium perfringens]
          Length = 277

 Score =  323 bits (829), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 152/275 (55%), Positives = 212/275 (77%), Gaps = 1/275 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 4   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 63

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 64  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 123

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 124 VVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 182

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 183 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 242

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           + RRT++ LNKA++RAH+L GL IA+ N+DEV+ I
Sbjct: 243 ITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 277


>gi|125972827|ref|YP_001036737.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
 gi|125713052|gb|ABN51544.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
          Length = 727

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 224/739 (30%), Positives = 383/739 (51%), Gaps = 60/739 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  K A + G+
Sbjct: 11  IVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK-TKSANVVGQ 68

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERYTECRLQ 136
            M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG   S D    AA RYTE +L 
Sbjct: 69  TM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDM-KYAAPRYTEVKLD 126

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA++I + NL 
Sbjct: 127 KICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSICSFNLV 186

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV +  V  I + + DL   + I++ PDFPTG  +I     ++  Y  GRG+  +R    
Sbjct: 187 EVCNAAVEFIKDENTDL---VGILKAPDFPTGGQLIYNEREMREIYEKGRGTFKLRAKYR 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G ++ +++K
Sbjct: 244 YDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLKIALDIK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR + + R+T Y
Sbjct: 301 RNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMDCIKRQTLY 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            ++K   + H+L+GL   + ++D+ ++IIR +         LM+                
Sbjct: 361 DIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMK---------------- 404

Query: 436 DSSYTIGSDGTMYLSEVQTRAI-LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              + I      +++E++ R +  E  L R++         E+ SL  EI E  ++  S 
Sbjct: 405 --GFGIDQAQAEFVAEIKLRNLNKEYILKRVS---------EIESLKKEIAELNELYGSE 453

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED--MVVTVSHLGYVKRVP 552
            ++  +I ++L  +  +   PRRT IV      E     + ED  + + ++   Y+K++P
Sbjct: 454 KKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIP 513

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  R             +++ DF+           +L FS+   VYK K++ +      
Sbjct: 514 LTSLRTSPEHK-------LKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKAS 566

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + G+ L N+LSL +GE I  ++   + +      Y++F  ++G V +  L  +       
Sbjct: 567 SLGEFLSNVLSLEEGEEIIHMVATDDYKG-----YMIFGFENGKVAKIVLESYATKTNRK 621

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+ +   KG
Sbjct: 622 KLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKG 681

Query: 733 D---QVISMAIVLHADADY 748
                +  ++ V   D DY
Sbjct: 682 SVMTHIKKISEVSFTDPDY 700


>gi|281417026|ref|ZP_06248046.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
 gi|281408428|gb|EFB38686.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
          Length = 727

 Score =  323 bits (828), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 222/738 (30%), Positives = 381/738 (51%), Gaps = 58/738 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  K A + G+
Sbjct: 11  IVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK-TKSANVVGQ 68

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG         AA RYTE +L K
Sbjct: 69  TM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRYTEVKLDK 127

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA++I + NL E
Sbjct: 128 ICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSICSFNLVE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V +  V  I + + DL   + I++ PDFPTG  +I     ++  Y  GRG+  +R     
Sbjct: 188 VCNAAVEFIKDENTDL---VGILKAPDFPTGGQLIYNEREMREIYEKGRGTFKLRAKYRY 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G ++ +++KR
Sbjct: 245 DKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLKIALDIKR 301

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR + + R+T Y 
Sbjct: 302 NADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMDCIKRQTLYD 361

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           ++K   + H+L+GL   + ++D+ ++IIR +         LM+                 
Sbjct: 362 IDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMK----------------- 404

Query: 437 SSYTIGSDGTMYLSEVQTRAI-LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             + I      +++E++ R +  E  L R++         E+ SL  EI E  ++  S  
Sbjct: 405 -GFGIDQAQAEFVAEIKLRNLNKEYILKRVS---------EIESLKKEIAELNELYGSEK 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED--MVVTVSHLGYVKRVPL 553
           ++  +I ++L  +  +   PRRT IV      E     + ED  + + ++   Y+K++PL
Sbjct: 455 KIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIPL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           +  R             +++ DF+           +L FS+   VYK K++ +      +
Sbjct: 515 TSLRTSPEHK-------LKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASS 567

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L N+LSL +GE I  ++   + +      Y++F  ++G V +  L  +       K
Sbjct: 568 LGEFLSNVLSLEEGEEIIHMVATDDYKG-----YMIFGFENGKVAKIVLESYATKTNRKK 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+ +   KG 
Sbjct: 623 LANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGS 682

Query: 734 ---QVISMAIVLHADADY 748
               +  ++ V   D DY
Sbjct: 683 VMTHIKKISEVSFTDPDY 700


>gi|13810783|gb|AAK40036.1|AF272026_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 247

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/246 (60%), Positives = 194/246 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 2   MNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG 
Sbjct: 62  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGA 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 122 AGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRK 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 182 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDL 241

Query: 300 RDESDR 305
           RDESDR
Sbjct: 242 RDESDR 247


>gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
 gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
          Length = 761

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 250/794 (31%), Positives = 396/794 (49%), Gaps = 96/794 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P ++DG KPV RRIL+ M  MG+  N K VK AR+ GE++GKY
Sbjct: 15  ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSARVVGEILGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQ+++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 75  HPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLSPIADLLLSE 134

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+ +EPV+L AR P VL+NG  GIAVGMAT IP+HNL E+    +A+
Sbjct: 135 IQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLTEITQAAIAL 194

Query: 206 IDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           + NP+++   LM  +  PDF  G  +I     ++  Y TG+GS+ +R    I+K +  + 
Sbjct: 195 LKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYEIDKMARGQW 254

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----------------EKRIVD-IADLRDESD-R 305
           +++V+E+P   + A +L +I E                    +K ++D I  +RD+SD  
Sbjct: 255 RVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIEKVRDDSDGE 314

Query: 306 QGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVA 363
              R++ E K         +N L   T L+   SVN+V +    +P +  L  IL+ ++ 
Sbjct: 315 HPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNLKTILQEWLD 374

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R   V RR ++ LN    R H+L G  IA  ++DEV+R+IR +  P+            
Sbjct: 375 YRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKA----------- 423

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR---LARLTGLGRDDIRNELNSL 480
                   DL+ + S          LSE+Q   ILE+R   LARL G+  ++  NEL   
Sbjct: 424 --------DLMANFS----------LSEIQAEDILEIRLRQLARLEGIKLENELNELREE 465

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              +   L   +++ +   IIK E+ +   +    RRT +VE             E + +
Sbjct: 466 QSSLHTLLGDENAKKK--HIIK-EMQADAKQFGDARRT-LVEAAERATLTQTTADEPVTL 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        RA+       +  V ++ D +  +    T   V+     G  Y 
Sbjct: 522 ILSQKGWI--------RARSGHDVDIAQTVFKEGDGLQQILPARTVQPVIVLDDSGRSYT 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRR 659
                +P G  +  G  L +++ +    +I +++   PED       + + A   G    
Sbjct: 574 INPADIPKG--RGDGVPLASLIDMPANAQIVSMLTGEPED-------HYLLANSGGYGFI 624

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-------ENDILLTTKLGQCVRFPISA 712
            KL       ++GK  M LD+ + +L    C         +  I+L T   + + FP+  
Sbjct: 625 CKLEHLHSRLKAGKTVMTLDNGETVLP-PVCVHLSSLINPDCKIMLATAHNRLLAFPLGE 683

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +++ A GR   G++ ISL +GD+V  + ++  AD        Y   +  +R  IS +T  
Sbjct: 684 MKIMAKGR---GLQMISLQEGDRVQRLNVLSSAD--------YRLTIVGKRGGISHETLH 732

Query: 772 ITSLKNDSSVEGNI 785
           I  +      +G I
Sbjct: 733 IADITQKRGRKGKI 746


>gi|256005840|ref|ZP_05430790.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|255990204|gb|EEU00336.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|316940937|gb|ADU74971.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           1313]
          Length = 727

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 224/739 (30%), Positives = 383/739 (51%), Gaps = 60/739 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  K A + G+
Sbjct: 11  IVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEK-TKSANVVGQ 68

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERYTECRLQ 136
            M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG   S D    AA RYTE +L 
Sbjct: 69  TM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKY-AAPRYTEVKLD 126

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA++I + NL 
Sbjct: 127 KICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSICSFNLV 186

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV +  V  I + + DL   + I++ PDFPTG  +I     ++  Y  GRG+  +R    
Sbjct: 187 EVCNAAVEFIKDENTDL---VGILKAPDFPTGGQLIYNEREMREIYEKGRGTFKLRAKYR 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G ++ +++K
Sbjct: 244 YDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLKIALDIK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR + + R+T Y
Sbjct: 301 RNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMDCIKRQTLY 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            ++K   + H+L+GL   + ++D+ ++IIR +         LM+                
Sbjct: 361 DIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLME---------------- 404

Query: 436 DSSYTIGSDGTMYLSEVQTRAI-LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              + I      +++E++ R +  E  L R++         E+ SL  EI E  ++  S 
Sbjct: 405 --GFGIDQAQAEFVAEIKLRNLNKEYILKRVS---------EIESLKKEIAELNELYGSE 453

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED--MVVTVSHLGYVKRVP 552
            ++  +I ++L  +  +   PRRT IV      E     + ED  + + ++   Y+K++P
Sbjct: 454 KKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNYLKKIP 513

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  R             +++ DF+           +L FS+   VYK K++ +      
Sbjct: 514 LTSLRTSPEHK-------LKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKAS 566

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + G+ L N+LSL +GE I  ++   + +      Y++F  ++G V +  L  +       
Sbjct: 567 SLGEFLSNVLSLEEGEEIIHMVATDDYKG-----YMIFGFENGKVAKIVLESYATKTNRK 621

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+ +   KG
Sbjct: 622 KLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKG 681

Query: 733 D---QVISMAIVLHADADY 748
                +  ++ V   D DY
Sbjct: 682 SVMTHIKKISEVSFTDPDY 700


>gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
 gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
          Length = 456

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/470 (40%), Positives = 280/470 (59%), Gaps = 43/470 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+N
Sbjct: 61  PD-DPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLN 119

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-G 236
           G  GIAVGMAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  
Sbjct: 120 GVTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVE 179

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++  Y +GRGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  +
Sbjct: 180 LEKIYRSGRGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMV 234

Query: 297 ADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERF 352
            DLRDESD +    ++ + R      D+++N L+  T L+  F V  NM+ L+  +P+  
Sbjct: 235 EDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVK 293

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L+ IL  +++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+ 
Sbjct: 294 GLVQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKA 353

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               LM R           DL D                +Q  AIL+ +L  L  L    
Sbjct: 354 V---LMAR----------FDLTD----------------IQADAILDTKLRHLAKLEEMK 384

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           IR E + L  E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE
Sbjct: 385 IRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVE 434


>gi|159468217|ref|XP_001692279.1| hypothetical protein CHLREDRAFT_115934 [Chlamydomonas reinhardtii]
 gi|158278465|gb|EDP04229.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 315

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/314 (51%), Positives = 214/314 (68%), Gaps = 2/314 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y KCAR+ GEV+GK+HPHG+ A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGKDTVD 152
           YD+L R+AQD+S+R+ L++G GNFGSVD DP AA RYTECRL  AA   LL DLG  TV+
Sbjct: 61  YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +R  +D S QEPVVL A  PN+LVNG  GIAVG+A+ IP HNLGEVV     +I NP++ 
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEI 271
            + LME +RGPD+PTG  ++    +  AY TGRGS     ++   +T+ G  E IV+TE+
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPELLAAYRTGRGSAAAEKLAQAAETADGGPELIVITEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY V K  +        R      +AD+RDESDR G RVV+E+K G +A+++L QL++ T
Sbjct: 241 PYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFKDT 300

Query: 332 SLQSLFSVNMVALN 345
            LQ    V    L 
Sbjct: 301 RLQVCADVRWCGLQ 314


>gi|332141548|ref|YP_004427286.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551570|gb|AEA98288.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 545

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 202/562 (35%), Positives = 303/562 (53%), Gaps = 87/562 (15%)

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +V RRT + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P  A++ L+ + W+  D+
Sbjct: 1   MVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDV 60

Query: 428 KDLIDLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             +++   D +         + I  DG  YL+E Q +AIL+LRL +LTGL  + I  E  
Sbjct: 61  AQMLERAGDDAARPDWLMPEFGI-RDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYK 119

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I E L IL+S  RL+ +I++EL  ++DE    RRT I     D++ ED I +ED+
Sbjct: 120 QLLELIAELLHILNSPERLMEVIQEELEKIRDEFGDERRTEITAASHDIDIEDLIEQEDV 179

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+S  GYVK   L+ Y AQRRGG+G+S   M+DED +  L + +TH  +L FS+ G +
Sbjct: 180 VVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILCFSTRGRL 239

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV++LP  S  ARG+ ++NIL L   ERIT I+P  E E      YV+ AT +G V+
Sbjct: 240 YWLKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFEEGK---YVLMATANGTVK 296

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------- 708
           +  LS + +   SG IA+ L+  DE++ V+    ++DI+L +  G+ VRF          
Sbjct: 297 KTDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETG 356

Query: 709 -----PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                P +   + A    GR + GVRGI L  G +V+S+ +                   
Sbjct: 357 EVKRDPETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVP------------------ 398

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                           K D  V                   LT +E GFGKRT   D+  
Sbjct: 399 ----------------KGDGPV-------------------LTATENGFGKRTPLEDYPA 423

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R+ +G+ +  VS+ N  G +V    V+D ++I+L+SD+GTL+R  V+E+ +  R T+G
Sbjct: 424 KSRATQGVVSIKVSERN--GKVVGAVQVDDTNEIMLISDQGTLVRTRVSEVSVVGRNTQG 481

Query: 880 VVIFSTAKDERVVSVERIRESE 901
           V +  T + E VV ++RI E E
Sbjct: 482 VRLIRTVEGEHVVGLQRIEEVE 503


>gi|37624524|gb|AAQ96058.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624526|gb|AAQ96059.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624528|gb|AAQ96060.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 240

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 147/237 (62%), Positives = 187/237 (78%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH
Sbjct: 61  VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAH 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EVV+
Sbjct: 121 ELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVN 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R  + +E
Sbjct: 181 GCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARAEVE 237


>gi|37624494|gb|AAQ96043.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624496|gb|AAQ96044.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624498|gb|AAQ96045.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 246

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 148/238 (62%), Positives = 188/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K ARI G
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAEVE 238


>gi|70671793|gb|AAZ06259.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671795|gb|AAZ06260.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671797|gb|AAZ06261.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 245

 Score =  320 bits (821), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 148/243 (60%), Positives = 193/243 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDG
Sbjct: 3   LGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GI
Sbjct: 63  DSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGI 122

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY 
Sbjct: 123 AVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYE 182

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDE
Sbjct: 183 SGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDE 242

Query: 303 SDR 305
           SDR
Sbjct: 243 SDR 245


>gi|19569753|gb|AAL92168.1| GyrA protein [Bacillus amyloliquefaciens]
          Length = 244

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/242 (60%), Positives = 192/242 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDG
Sbjct: 3   LGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GI
Sbjct: 63  DSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGI 122

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY 
Sbjct: 123 AVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYE 182

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDE
Sbjct: 183 SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDE 242

Query: 303 SD 304
           SD
Sbjct: 243 SD 244


>gi|110554877|gb|ABG75545.1| GyrA [Klebsiella pneumoniae]
          Length = 250

 Score =  319 bits (818), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 150/250 (60%), Positives = 191/250 (76%), Gaps = 1/250 (0%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A +D+
Sbjct: 121 ETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDD 180

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIV 267
            DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+
Sbjct: 181 EDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKSGRETII 240

Query: 268 VTEIPYQVNK 277
           V EIPYQVNK
Sbjct: 241 VHEIPYQVNK 250


>gi|37624500|gb|AAQ96046.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 242

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 185/234 (79%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K ARI G+V+G
Sbjct: 1   ELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL
Sbjct: 61  KYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL EV++GC+
Sbjct: 121 ADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 AYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAEVE 234


>gi|806907|gb|AAC43991.1| PAR-C [Mycoplasma genitalium]
          Length = 479

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/489 (35%), Positives = 268/489 (54%), Gaps = 29/489 (5%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++    Y K AR  GE+MGKYHP
Sbjct: 20  SFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTTPYKKSARAVGEIMGKYHP 79

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+++IYDA+ RM+Q W      +   GN GSVDGD  AA RYTE RL      LL D+ 
Sbjct: 80  HGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMRYTETRLSLYGFELLKDID 139

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K  V F  N+D S +EP VL    PN+ +NG  GIA G ATNI  HN  E++D     ID
Sbjct: 140 KKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATNIAPHNTNELLDSLCLRID 199

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
            P+ +L  +++I++GPDFPTG  +     + + Y  G+G  +I+    + K   +  QI 
Sbjct: 200 QPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFIIQAKYEVNK---NLNQIE 256

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +T+I Y+  KA ++++I E++ + ++  I  + D SDR G R++I+ K    A+ I+  L
Sbjct: 257 ITQIRYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIRIIIKHKDFLPAEKIMAFL 316

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           +++T LQ  F++N   +    P +  L+  L  F+ F  E+++ + KY L  A  R  ++
Sbjct: 317 FKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELIINKAKYELELASKRLEII 376

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
           +GL  A++ +D+++++IR + +   AR +                LID+  +T       
Sbjct: 377 LGLIKAISIIDKIIKLIRSAVDKSDAREK----------------LIDNFKFTFN----- 415

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
                Q  AI+ LRL +LT     ++  E N L   +     +++S      ++K++   
Sbjct: 416 -----QAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQLIASEKARNKLLKKQFEG 470

Query: 508 VKDELDTPR 516
            K +    R
Sbjct: 471 YKKQFHQQR 479


>gi|145633277|ref|ZP_01789008.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986123|gb|EDJ92713.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 267

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 152/257 (59%), Positives = 193/257 (75%), Gaps = 7/257 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIE 257
           Y TGRG + +R  + +E
Sbjct: 234 YRTGRGKVYVRARATVE 250


>gi|116486981|emb|CAJ38776.1| DNA gyrase subunit A [Mesorhizobium sp. Ca004]
          Length = 212

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 148/212 (69%), Positives = 173/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|116486983|emb|CAJ38778.1| DNA gyrase subunit A [Mesorhizobium sp. Cc3]
          Length = 212

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/212 (69%), Positives = 172/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +  +AVIDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNAAIAVIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|268610225|ref|ZP_06143952.1| DNA gyrase/topoisomerase IV, subunit A [Ruminococcus flavefaciens
           FD-1]
          Length = 747

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 224/734 (30%), Positives = 368/734 (50%), Gaps = 53/734 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV-EWNKKYVK 73
            + S  I D ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M + G+   +K+  K
Sbjct: 25  SVVSEKIADTLKKNYMPYAMSVIISRALPEI-DGFKPSHRKLLYMMYKRGLLSPDKERSK 83

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
            A + GE M K +PHG+ AIY+ L RM + + +L    I+ +GNFG         AA RY
Sbjct: 84  SANVVGETM-KLNPHGDQAIYETLVRMTRGNEALLHPYIDSKGNFGKQYSSKMHFAAPRY 142

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K  + L  D+ K+TVDF PNYD + QEP +L A +P VLVN   GIAV MA+N+
Sbjct: 143 TEVKLEKICNELFRDIDKETVDFVPNYDNTMQEPTLLPASFPTVLVNSNTGIAVSMASNV 202

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIV 249
              NL EV +  +A++ +P+ D+   +  ++GPDFP G  +L     +   Y TGRGSI 
Sbjct: 203 CPFNLEEVCETTIALMKDPNHDI---LSTLKGPDFPGGGFMLYDEAELNKVYETGRGSIK 259

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K +   E   +TEIPY     A+++KI ELV+  +I +++ +RDE+D  G +
Sbjct: 260 VRSKYSYDKAANCLE---ITEIPYTTTVEAIIDKIIELVKAGKIREVSYIRDETDIDGLK 316

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKR    D ++ +LYR T LQ  +  N   L    P+   +  IL  + AFREE +
Sbjct: 317 IAIDLKRNTDPDKLMQKLYRLTPLQDSYPCNFNILIAGTPKVMGVREILTEWTAFREECI 376

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L K +++ H+L  L+  + ++D+ +RIIR + N       LM           
Sbjct: 377 QRRTYHDLTKKKEKLHLLEALSKILLDIDKAIRIIRETENEADVVPNLM----------- 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      IG      + E+Q   + E++L  +          E++ L  +I+E  D
Sbjct: 426 -----------IG----FGIDEIQAEFVAEIKLRNINKQYILRRVEEVDQLKKDIEEMED 470

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGY 547
           IL  + ++  II  EL  V      PR+T         E+E+     D  V   VS  GY
Sbjct: 471 ILRDKKKIRKIIINELRDVIKNYAKPRKTMFYYQSDIEEEEEIDDTPDYPVNLFVSKSGY 530

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++     R         S   +++ D+++  F  +  T ++FFS     YK K     
Sbjct: 531 FKKITPQSLRMS-------SEHKLKEGDYISQSFEATNKTDLIFFSDKAQAYKSKASAFD 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                  G  +   LS ++ E + T++P     ++  + Y+VF  ++G   +  +  +  
Sbjct: 584 DTKASVMGDYVPAKLSFDENENLVTMLP-----TTDYSGYIVFFFENGKAAKVPVKSYET 638

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+A     +  +++     ++ DILL +  G  + F    I   + R+S GV+ +
Sbjct: 639 KTNRKKLAKAYSEKSPLIAALFVGEDCDILLRSSSGHALVFNTGMILPKSTRDSQGVQVM 698

Query: 728 SLAKGDQVISMAIV 741
           +L K   + S  I+
Sbjct: 699 TLRKKALLASAVII 712


>gi|313625788|gb|EFR95409.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           J1-023]
          Length = 262

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/259 (56%), Positives = 194/259 (74%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVV 268
           +RG   IE+    +E  V 
Sbjct: 243 VRGRVDIEEKKNGKETEVT 261


>gi|116486985|emb|CAJ38780.1| DNA gyrase subunit A [Mesorhizobium tianshanense]
          Length = 212

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 172/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ K+TVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASGSEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE    D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGRVNIEARGND 212


>gi|4099112|gb|AAD00551.1| topoisomerase II ParC [Mycoplasma arthritidis]
          Length = 450

 Score =  314 bits (804), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 171/456 (37%), Positives = 261/456 (57%), Gaps = 28/456 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ D M   +  Y+  +I  RAIPD RDGLKPV RRIL+ M  + +  N+ + K A
Sbjct: 16  IIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRKSA 75

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMG+YHPHG+++IY+AL RM+Q+W     LIE  GN GS+D DP AA RYTE RL
Sbjct: 76  KIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPAAAMRYTESRL 135

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K +  +L DL +  V   PN+D +  EPVVL +  PN+L+NG  GIA G AT IP HNL
Sbjct: 136 EKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPHNL 195

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  + +I NP I L+ L +I++GPDFPTG VI G  GI  A+ TG+G I I     
Sbjct: 196 SEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQAFETGQGKINISSRYR 255

Query: 256 IEKTSGDREQIV---VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                    +I+   + E P+ V K+ ++  I  LV +K I  + ++RD+S+R+G+ + +
Sbjct: 256 FVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGFSIYL 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+  A+A+ I+N L   T L+  ++ NMVA++   P+   L  +L  +++  +++  + 
Sbjct: 316 ELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQMLLFTYLSHLKDINTKG 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K   R  ++ G        DEV+R+I+ S N +    E +++++  ++I     
Sbjct: 376 IEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNI----- 430

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
                               Q  AI ELRL +L+ +
Sbjct: 431 --------------------QATAIAELRLYKLSKM 446


>gi|326791468|ref|YP_004309289.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542232|gb|ADZ84091.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 714

 Score =  313 bits (802), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 206/718 (28%), Positives = 370/718 (51%), Gaps = 53/718 (7%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +IT+ ++++Y+ YA++VI+ RA+P++ DG KP HR++L+ M +M +    +  K A I G
Sbjct: 9   NITETLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMNLIKGLR-TKSANIVG 66

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWS-LRLLLIEGQGNFGSVDGD--PPAAERYTECRLQ 136
           + M K +PHG+ AIY+ + R+ + +S L    ++ +GNFG V       AA RYTE +L 
Sbjct: 67  QTM-KLNPHGDGAIYETMVRLTKGYSALITPFVDSKGNFGKVYSRDMAYAAARYTEAKLS 125

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +    + +D+ +D VDF  NYDG+ +EPV+L  R+PN+LVN   GIAVGMA+N  + NL 
Sbjct: 126 EICTEVFNDIEEDAVDFVDNYDGTLKEPVLLPTRFPNILVNPNQGIAVGMASNFCSFNLK 185

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV +  +A + N D D+   +E I  PDFPTG  +IL  T ++    TG+GS  +R   H
Sbjct: 186 EVCNATIAYLKNEDADV---LEHIIAPDFPTGGQIILDETEMREVLETGKGSFKVRAKYH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
             K       I + EIPY     A+++KI ELV+  +I +I D+RDE+D  G ++ I+LK
Sbjct: 243 YIKKEN---CIEIIEIPYTTTVEAIIDKIEELVKAGKIKEITDVRDETDLSGLKLTIDLK 299

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    ++++ +L++ T L+  FS N   L    P+      I+K +  FR++ VVR+ ++
Sbjct: 300 RSTDPEMLMQKLFKSTPLEDSFSCNFNLLINGMPKVLGFKEIIKEWCEFRQQCVVRKYRF 359

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            + K   R H+L+GL   + ++D+ + I+R +   +     LM                 
Sbjct: 360 AIEKMEKRYHLLIGLKQILLDIDKAIEIVRHTEKEKDVVPRLM----------------- 402

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        +SE+Q   + E++L  L      +   EL+ L  +I E  DI+ +  
Sbjct: 403 ---------AHFEISEMQADYVAEIKLRHLNKQYILETLKELDELEKKIAELKDIIENPK 453

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           ++  +I  EL  ++ +  T R+T +++   ++ ++ E+ I   ++ +  +   Y+K++ L
Sbjct: 454 KVKKVISDELKVIQKKFGTERQTEVIKHTEVVKVKHEELIEDYNVKLFFTDHQYLKKITL 513

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R+    G+ +    ++++D +      S  + +L F++   VYK K+  +       
Sbjct: 514 VSLRS---SGEQK----LKEDDTIIQEIEASNRSDLLLFTNKSNVYKLKLHEIEDTKASQ 566

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  L N+L L +GE+I  I       ++    Y+ F    G V +  ++ +       K
Sbjct: 567 FGVYLPNLLDLEEGEQILAI-----HSTTDYTGYIAFGFSTGKVAKVPVAAYETKTNRKK 621

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           +      +   + +    +E+ +LLT +  +    P+  +     R++ GV+ +S+ K
Sbjct: 622 LIKAFYGKSPCVGIAFVEEEDILLLTREDDKVGVVPVVLLEEKQKRDANGVQALSITK 679


>gi|37624462|gb|AAQ96027.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624464|gb|AAQ96028.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624466|gb|AAQ96029.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624468|gb|AAQ96030.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624470|gb|AAQ96031.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 246

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 186/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|220928824|ref|YP_002505733.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
 gi|219999152|gb|ACL75753.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
          Length = 728

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 212/730 (29%), Positives = 378/730 (51%), Gaps = 63/730 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +   +IT+ ++++Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +    K  K
Sbjct: 4   KNLVEQNITETLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLTGAK-TK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERY 130
            + I G+ M K +PHG+ AIY+ + RM + + +L    ++ +GNFG         AA RY
Sbjct: 62  SSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFVDSKGNFGKQYSRDMKFAAPRY 120

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K    +  D+ K+TV+F  NYDG+ +EPV+L   +P +LVN   GIAVGMA+NI
Sbjct: 121 TEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTTFPTILVNSNQGIAVGMASNI 180

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
            + NL E+     A+ID+ ++    L + ++ PDF +G  +I     I++ Y  GRG   
Sbjct: 181 CSFNLVEICKTTSALIDDENV---VLEDYLKAPDFSSGGQLIYSAKEIRDIYKNGRGGFK 237

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K   +   I + EIPY     A++++I EL++  +I +I D+RDE+D  G +
Sbjct: 238 VRARYKYDK---ENNCIEIIEIPYTTTVEAIIDQIIELIKGGKIREITDVRDETDLSGLK 294

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+L++    D+++N+L++ T LQ  FS N   L   +P    +  IL  ++ FR E +
Sbjct: 295 LTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILINGRPRVMGVRTILNEWLNFRVECI 354

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+  Y + K  D+ H+L+GL   + ++D+ ++IIR +         LM           
Sbjct: 355 KRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGTEQEAKVVPNLMT---------- 404

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN---ELNSLGIEIKE 486
                       G D      E+Q   I E++L     L ++ I N   E  +L  EI E
Sbjct: 405 ----------GFGID------EIQADYIAEIKLR---NLNKEYILNRVGETENLIKEIAE 445

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
             DI  + +++  II+++L  +  +   PRRT I+  E + ++  E  I   ++ V ++ 
Sbjct: 446 LKDIHGNDNKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKVFLTE 505

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+K++PL   RA            ++DED +           +L F++   VYK +++
Sbjct: 506 HNYLKKIPLVSLRANPEHK-------LKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIY 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL--YVVFATKHGNVRRNKL 662
            +P     + G+ L N+L L+  E+I  I       ++ NN   Y++F  ++G   + ++
Sbjct: 559 EIPDCKASSLGEYLTNLLGLDNDEKIIYI-------TATNNYEGYMLFFYENGKGAKIEM 611

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S +       K+A    S   ++ +   T++ +++  + + + + F  ++I     +NS 
Sbjct: 612 SGYATKTNRKKLANAYYSGSPLIRMIFITEDIELIAISSINKLLVFNTNSINPKTTKNSQ 671

Query: 723 GVRGISLAKG 732
           GV+ ++  KG
Sbjct: 672 GVQILTSKKG 681


>gi|317133208|ref|YP_004092522.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471187|gb|ADU27791.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 744

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 215/727 (29%), Positives = 375/727 (51%), Gaps = 55/727 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  IT  +  +Y+ YA++VI+ RAIP++ DG KP HR+IL+ M +MG+    +  K A
Sbjct: 25  VLSEPITHTLTANYMPYAMSVIISRAIPEI-DGFKPSHRKILYTMYKMGLLSGAR-TKSA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTE 132
            + G+ M + +PHG+ AIY+ + R+++ + +L    ++ +GNFG         AA RYTE
Sbjct: 83  NVVGQTM-RLNPHGDMAIYETMVRLSRGNEALLHAYVDSKGNFGKAYSRDMAFAASRYTE 141

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L    + L  D+ K TVDF  NYD + QEPV+L A +P++L+N   GIAVGMA++I  
Sbjct: 142 VKLDPICNELFRDIDKKTVDFVDNYDSTMQEPVLLPAAFPSILINSNIGIAVGMASSICP 201

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
            NL EV +  + ++ +P  DL   + +++ PDFP G ++L     +++ Y TGRGS+ +R
Sbjct: 202 FNLTEVCETTIRLMKDPAADL---LPLLKAPDFPGGGLVLYDADTLRSVYETGRGSLRVR 258

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               ++K       I +TEIP      A++++I ELV+  ++ +IAD+RDE+D  G ++ 
Sbjct: 259 ARYQLDKAG---RFIEITEIPPTTTVEAIMDRIVELVKTGKVREIADIRDETDLSGLKLT 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKRGA  D ++++L+R T L+  F  N   L G +P+   + G+L+A+ AFR + V R
Sbjct: 316 IDLKRGADGDKLMSRLFRLTPLEDTFGCNFNVLVGGRPQVLGVRGLLRAWTAFRMDCVRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L +A+DR H+L GL   + ++D+ VRI+R +         LM             
Sbjct: 376 RLRFDLGRAKDRLHLLRGLEKILLDIDKAVRIVRETDEESEVVPNLM------------- 422

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                    IG      + EVQ   + E++L         +   E+  L  EI +    L
Sbjct: 423 ---------IG----FGIDEVQAEFVAEIKLRHFNRAYILEKTQEIEQLEREIADLEATL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              +R+L +I  EL ++  +   PRR+ I+  + +    DE+ I    + + ++  GY K
Sbjct: 470 GEDARMLRLIADELRAIVKKYGRPRRSLILYDVKEETAPDEEEIPAYPVTLFLTREGYFK 529

Query: 550 RV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           ++ P S+    R  G+ +    +++ D +      +    +LFF+    VYK  V     
Sbjct: 530 KITPQSL----RMSGEQK----LKESDALVQTVESTNGCELLFFTDRCQVYKSSVSEFED 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     G  L   L  ++GE +   M   +    W    ++F   +G   + +L+ +   
Sbjct: 582 GKASVLGDYLPARLGFDEGEALRR-MVVAKQYDGW----LLFIYANGKAAKVELASYKTK 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R  K+      ++ ++++   T++ +++LT+  G+ +     A+ V     + GV  ++
Sbjct: 637 TRRRKLVNAYSDKESLVAMFHLTEDREVVLTSSAGKMLLLDTGAVPVKTTHTTQGVTAMT 696

Query: 729 LAKGDQV 735
           L  G  V
Sbjct: 697 LKPGQAV 703


>gi|37624482|gb|AAQ96037.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624484|gb|AAQ96038.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624486|gb|AAQ96039.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624488|gb|AAQ96040.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624490|gb|AAQ96041.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624492|gb|AAQ96042.1| DNA gyrase subunit A [Escherichia coli]
          Length = 246

 Score =  311 bits (796), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/238 (60%), Positives = 187/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|37624502|gb|AAQ96047.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624504|gb|AAQ96048.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624506|gb|AAQ96049.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624508|gb|AAQ96050.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624510|gb|AAQ96051.1| DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 246

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 186/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ++N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYVENEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|313192105|emb|CBX19912.1| gyrase A [Clostridium perfringens]
          Length = 263

 Score =  310 bits (794), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 145/262 (55%), Positives = 202/262 (77%), Gaps = 1/262 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 2   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 62  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 121

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 122 VVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 180

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 181 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 240

Query: 369 VVRRTKYLLNKARDRAHVLVGL 390
           + RRT++ LNKA++RAH+L GL
Sbjct: 241 ITRRTQFELNKAKERAHILEGL 262


>gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 801

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 235/743 (31%), Positives = 374/743 (50%), Gaps = 85/743 (11%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++V+ GRAIP L DG KPV RRIL+ M  MG++ + ++VK AR+ GEV+GK+HPHG+ ++
Sbjct: 81  MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDA+ RMAQ ++LR  +++GQGNFGS+DGD  AA RYTE  L   +  LL ++ + TVDF
Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R NYDG+ +EPV L AR P +L+NG  GIAVGMAT IP HNL E+   C  ++  PD+  
Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260

Query: 214 DALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D +++ I GPDFP G  I+   G I+ AY +GRGSI +R    +EK +    +I V ++P
Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320

Query: 273 YQVNKAAMLEKIAEL--------------------VREKRIVDIADLRDESDR-QGYRVV 311
             V+ A +L +I  L                     +   +  +  +RDES +    R+V
Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380

Query: 312 IELK-RGASADVILNQLYRYTSLQSLFSVNMVA--LNGYKPERFTLIGILKAFVAFREEV 368
           IE + R      ++  L   TSL+S  SVN+    L+G  P    L  IL+ +V +R   
Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAP-CMPLTRILRQWVRYRVTT 439

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+++ L+KA  R H+L G    + ++D V+R+IR S +P+                 
Sbjct: 440 VRRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKA---------------- 483

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           DL+   D             LSE+Q   ILE+RL +L  L   ++  EL           
Sbjct: 484 DLMTHFD-------------LSEIQAEDILEIRLRQLARLAGIELERELADKQETAAYLS 530

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED------CIVREDMVVTV 542
            +L   SRL  +I +E+ +   +    RRT ++E    + ++        I  E + V V
Sbjct: 531 ALLQDESRLRALIAEEIQADAKKFGDDRRT-LLEADTAITNKSIQTIAAAITDEPVTVIV 589

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           S  G+++           R G G     +  ++ D +   F V +  +++     G  Y 
Sbjct: 590 SQKGWLR----------TRSGHGLDTATLGFKEGDALLQAFEVRSVDTLVLLDHSGRAYS 639

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V ++P G  +  G  + + +    G  + ++        + ++L++V  T  G     
Sbjct: 640 IAVAQIPGG--RGDGIPVSSQVDFQPGGVLASVA-----CGAGDSLWLVAGTG-GYGFLT 691

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGR 719
            L +    NR+GK  + LD ++  L +   T  + + L  +  G+ + FP+  ++     
Sbjct: 692 TLENMTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSSDGRGLLFPLVDVKNLP-- 749

Query: 720 NSVGVRGISLAKGDQVISMAIVL 742
              GV+ I+L     + S+++ L
Sbjct: 750 KGKGVKLIALGASATLQSLSVYL 772


>gi|37624512|gb|AAQ96052.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624514|gb|AAQ96053.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624516|gb|AAQ96054.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624518|gb|AAQ96055.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624520|gb|AAQ96056.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624522|gb|AAQ96057.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 246

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 186/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|284097496|ref|ZP_06385583.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830992|gb|EFC35015.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 250

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 146/236 (61%), Positives = 183/236 (77%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+  T V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM QMG+  N+ Y 
Sbjct: 4   EERFTQVAIEDEMRLSYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMNQMGLAHNRAYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+I GE+MG YHPHG++AIYDAL RMAQD+++R  L++GQGN+GSVDGDPPAA RYTE
Sbjct: 64  KSAKIVGEIMGNYHPHGDSAIYDALVRMAQDFNMRYTLVDGQGNYGSVDGDPPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF P YD S  EP+VL A+ PN+L+NG GGIAVG ATNIPT
Sbjct: 124 ARLTKLAGEMLADIDKETVDFGPTYDESDVEPLVLPAKLPNLLLNGAGGIAVGYATNIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNLGEVV   + V++NP   L  LM++I GPDFPT   I G  GI++AY  G G++
Sbjct: 184 HNLGEVVTALLYVLENPAATLPELMDMIPGPDFPTAGFIYGTQGIRDAYEHGAGAV 239


>gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis]
          Length = 386

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/381 (44%), Positives = 242/381 (63%), Gaps = 17/381 (4%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S 
Sbjct: 3   DGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSY 62

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +L + TVD+ PN+DG+ QEP
Sbjct: 63  RYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEP 121

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GPD
Sbjct: 122 KMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPD 181

Query: 225 FPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           FPT A +I  R  I+  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE+
Sbjct: 182 FPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQ 236

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLF--SV 339
           IA  +R K++  + DLRDESD +    ++ + R    D+  +++ L+  T L+  +  ++
Sbjct: 237 IANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINM 296

Query: 340 NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           NM+ L+  +P    L+ IL  ++ FR + V  R  + L K   R H+L GL IA  N+DE
Sbjct: 297 NMIGLDN-RPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDE 355

Query: 400 VVRIIRFSPNPETARRELMQR 420
           V+ IIR   +P+     LMQR
Sbjct: 356 VIHIIRTEDDPKPL---LMQR 373


>gi|37624472|gb|AAQ96032.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624474|gb|AAQ96033.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624476|gb|AAQ96034.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624478|gb|AAQ96035.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624480|gb|AAQ96036.1| DNA gyrase subunit A [Enterobacter cloacae]
          Length = 246

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 187/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A I++ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + +E
Sbjct: 181 NGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAEVE 238


>gi|167749706|ref|ZP_02421833.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
 gi|167657329|gb|EDS01459.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 227/722 (31%), Positives = 377/722 (52%), Gaps = 61/722 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ITD +  +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A I G+
Sbjct: 32  ITDTLTENYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSANIVGQ 89

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG+ AIY+ + R+A+ + +L    ++ +GNFG         AA RYTE +L  
Sbjct: 90  TM-KLNPHGDMAIYETMVRLARGNEALLHPYVDSKGNFGKAYSRDMSFAASRYTEAKLDP 148

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               +  D+ +D VDF PNYD S  EPV+L  R+P VLVN   GIAV MA+NI + NL E
Sbjct: 149 ICAEIFADIDRDIVDFVPNYDNSMTEPVLLPTRFPAVLVNNNVGIAVSMASNICSFNLSE 208

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           V +   A++ N + D+   +  ++GPDFP G  IL     ++  YATGRGS+ +R     
Sbjct: 209 VCETAAALMKNLEHDI---VSTLKGPDFPGGGFILQDENELRRIYATGRGSVKVRSKYIY 265

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +KT+     I VTEIP      A+++KI E V+  ++ +I+D+RDESD  G ++ I+LKR
Sbjct: 266 DKTAN---CIEVTEIPPTTTIEAIIDKIVEQVKLGKLKEISDVRDESDLSGLKITIDLKR 322

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  ++ ++ +L+R T LQ +FS N   L G  P+   +  IL+ +  FR   V R+TK+ 
Sbjct: 323 GQDSEAVMKKLFRITPLQDVFSCNFNILVGGMPKVMGVAEILEQWTDFRITCVKRKTKFE 382

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +++ H+L GL   + ++D+ ++IIR                    + +D  +++ +
Sbjct: 383 LARKKEKLHLLTGLKKILLDIDKAIKIIR--------------------ETEDDAEVVPN 422

Query: 437 SSYTIGSDGTM--YLSEVQTRAILE-LRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                G D T   Y+++++ R I +   L R+          E++SL  EI +  DILSS
Sbjct: 423 LMIGFGIDETQAEYVADIKLRNINKGYILKRI---------EEIDSLKEEIADMEDILSS 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRV 551
             R+  II  EL  +  +   PR+T  + G  D E+E      D  V +  +  GY K++
Sbjct: 474 ERRVKQIIISELGDIAKKYGKPRKTMFIYGTEDEENEAEEEIPDYPVNLFFTREGYFKKI 533

Query: 552 -PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+    R  G+ +    +++ D + + +  S    +LFF+    VYK +      G 
Sbjct: 534 TPQSL----RMSGEQK----LKENDEIIETYDGSNRAELLFFTDKFQVYKARACDFEDGK 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G  L   L L+  ERI  ++   ED S      +V   ++G   +  ++ F    R
Sbjct: 586 ASVMGDYLPVKLELDPDERIIKMIA-AEDYSGT----LVMFFENGKCAKVPMASFETKTR 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             K+A   +    ++S+     + + +L+++ G+ + F    I   A R++ GV+ + L 
Sbjct: 641 RKKLANAYNDGSPLVSMTLIDGDCEFMLSSEAGKVMIFNTVLILPKAARDTQGVQVMRLT 700

Query: 731 KG 732
           + 
Sbjct: 701 RA 702


>gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 399

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 246/425 (57%), Gaps = 31/425 (7%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G E +  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++DGD
Sbjct: 1   GAETDIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  GIA
Sbjct: 61  SPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYA 242
           VGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  +Y 
Sbjct: 121 VGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYR 180

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+RDE
Sbjct: 181 TGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDE 240

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
           S      V++   R     +++  +++ T L+S F +NM  L+ G  P+   L  +LK +
Sbjct: 241 SAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEW 300

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P    + +M   
Sbjct: 301 LDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEP----KPVMMAR 356

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W         DL D+                Q  AIL +RL  L  L   +IR E + L 
Sbjct: 357 W---------DLTDN----------------QVEAILNMRLRALRKLEEFEIRKEFDELT 391

Query: 482 IEIKE 486
            E  E
Sbjct: 392 KEKGE 396


>gi|222137880|gb|ACM45453.1| DNA gyrase subunit A [Aeromonas fluvialis]
          Length = 235

 Score =  307 bits (786), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 180/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  I GPDFPTG +I GR+GI  AY TGRGS+ +R  + +E
Sbjct: 181 TIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|38677892|emb|CAE30286.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 225

 Score =  306 bits (785), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 142/225 (63%), Positives = 181/225 (80%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+T
Sbjct: 121 DGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           S  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 225


>gi|313192095|emb|CBX19907.1| gyrase A [Clostridium perfringens]
          Length = 266

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 144/263 (54%), Positives = 202/263 (76%), Gaps = 1/263 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 4   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 63

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 64  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 123

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 124 AKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 182

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 183 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 242

Query: 372 RTKYLLNKARDRAHVLVGLAIAV 394
           RT++ LNKA++RAH+L GL IA+
Sbjct: 243 RTQFELNKAKERAHILEGLIIAL 265


>gi|225017578|ref|ZP_03706770.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
 gi|224949638|gb|EEG30847.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
          Length = 744

 Score =  306 bits (785), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 216/728 (29%), Positives = 383/728 (52%), Gaps = 61/728 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ITD ++ +Y+ YA++VIL RA+P++ DG KP HR++L+ M +MG+    +  K A I G+
Sbjct: 31  ITDTLEKNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSANIVGQ 88

Query: 81  VMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M + +PHG+  IY+ + R+++ + +L    ++ +GNFG         AA RYTE +L  
Sbjct: 89  TM-RLNPHGDQTIYETMVRLSRGYQALLHPYVDSKGNFGKAYSRDMAYAASRYTEAKLDP 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + L  D+ KDTV+F PNYD S +EP +L   +P++LVN   GIAV MA+ I   NL E
Sbjct: 148 ICNELFRDIDKDTVEFVPNYDNSTKEPRLLPTTFPSILVNSNVGIAVSMASAICPFNLQE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           V +  +A + N + DL    EI++GPDFP G  ++   + ++  Y TGRGSI +R   + 
Sbjct: 208 VCEATIAFMKNSECDL---TEILKGPDFPGGGFLVQNPSELEKIYRTGRGSIRVRSRYNY 264

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +K++     I +TEIP      A+++KI +LV++ ++ +I+D+RDE+D  G ++ I+LKR
Sbjct: 265 DKSNN---CIEITEIPPTTTVEAIMDKIIDLVKQNKVKEISDMRDETDLSGLKLTIDLKR 321

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D ++ +L++ T L+  +S N   L    P    +  +L  +VAFR E + RR  + 
Sbjct: 322 GTDPDRLMRRLFKLTPLEDSYSCNFNVLIAGTPRVLGVYDLLDEWVAFRVECIKRRVWFE 381

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K +++ H+L GL   + ++D+ +RI+R +   +     LM                  
Sbjct: 382 LTKKKEKLHLLQGLQKILLDIDKAIRIVRETEEEKEVVPNLM------------------ 423

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN---ELNSLGIEIKECLDILSS 493
               IG      + E+Q   + E++L     L R+ I     E++ L  EI +  +IL+ 
Sbjct: 424 ----IG----FGIDEIQAEYVAEIKLRH---LNREYILKRTAEIDQLIQEIADMEEILAD 472

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + R+  II +EL  V  +   PRR+  +  + + D E+E+ I    + V +S  GY K++
Sbjct: 473 KRRVKQIIIKELKDVIKKYAQPRRSLFIYPDSVFDDEEEEEIPNYPVHVFLSEQGYFKKI 532

Query: 552 -PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+    R  G+ +    ++++D +      + +T +LFF+    VYK  + + P   
Sbjct: 533 TPQSL----RMSGEHK----LKEDDRMITHIETTNNTDLLFFTDKMQVYKYNLSQFPDTK 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G+ +   L   + ER+   M   +D S      ++F  ++G V +  +  +     
Sbjct: 585 ASVLGEYVPAKLGFEEEERLVG-MALTKDYSG----NILFFFENGKVAKVPIKSYETKTN 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             K+A     +  ++++    ++ + ++T+   + + F  + I V A +N+ GV+ ++L 
Sbjct: 640 RKKLANAYSDKSPLIALFPEAEDGEYIITSNNQKVLLFSSAMIAVKATKNTQGVQVMTLN 699

Query: 731 KGDQVISM 738
           K   V S+
Sbjct: 700 KNCTVESV 707


>gi|270160515|gb|ACZ63223.1| DNA gyrase subunit A [Aeromonas rivuli]
 gi|270160519|gb|ACZ63225.1| DNA gyrase subunit A [Aeromonas rivuli]
          Length = 235

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 180/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R ++++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N  +
Sbjct: 121 DWVPNYDGTELIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  I GPDFPTGA+I GR+GI  AY TGRGS+ +R  + +E
Sbjct: 181 TIDELMTYISGPDFPTGAIINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|84994460|ref|XP_951952.1| topoisomerase IV subunit A [Theileria annulata strain Ankara]
 gi|65302113|emb|CAI74220.1| topoisomerase IV subunit A, putative [Theileria annulata]
          Length = 993

 Score =  303 bits (777), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 161/420 (38%), Positives = 259/420 (61%), Gaps = 36/420 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++ +  + + D M +S+L YA+++ILGRA+PD RDGLK VHRRI++ M  + ++ N +
Sbjct: 94  DEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQ 153

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCA++ G+V+G YHPHG+ ++YDAL R++QD+ +++ LI+G GNFGS + DPPAA RY
Sbjct: 154 YRKCAKVVGDVLGNYHPHGDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAAMRY 212

Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TECRL   +   +L+D+  +T+D+ PN+D +  EP+VL  R PN+L+NG  GIAVG+ATN
Sbjct: 213 TECRLTNFSKTVMLNDINFNTIDYTPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATN 272

Query: 190 IPTHNLGEVVDGCV--------------------AVIDNPDIDLDALMEIIR---GPDFP 226
           IP HN  E+++  +                    A +D  D++ D   E++    GPDFP
Sbjct: 273 IPPHNPAEIINATIQYIKYILYIDIIHRSHLKTDATVD--DVNGDKSAEVVNEVLGPDFP 330

Query: 227 TGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           TG VI   R  ++  Y +G+G+++I+     E+    R  IV+ +IPY      ++E I 
Sbjct: 331 TGGVIRTTREAMRKIYESGKGTVLIQSRFVFEEKL--RISIVINQIPYNTRINDIIENIN 388

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV----ILNQLYRYTSLQSLFSVNM 341
             ++   I+ + D++DESDR G R+V+ELKR  S+ +    I+ +L R T     ++ N 
Sbjct: 389 RNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMTKLERLTEYN--YNCNF 446

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           + L+  +P RF+L  ILK ++ FR EV+ R+ K+LL K +    ++        N++ ++
Sbjct: 447 ITLDQDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAYITVYLNINTII 506


>gi|38677890|emb|CAE30285.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 224

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 140/224 (62%), Positives = 180/224 (80%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DG +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+T
Sbjct: 121 DGVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           S  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|326201734|ref|ZP_08191605.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
 gi|325988334|gb|EGD49159.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
          Length = 728

 Score =  303 bits (776), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 211/729 (28%), Positives = 379/729 (51%), Gaps = 59/729 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +   +ITD ++++Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +    K  
Sbjct: 3   HKNLVEQNITDTLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLAGAK-T 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPP--AAER 129
           K + I G+ M K +PHG+ AIY+ + RM + + +L    I+ +GNFG         AA R
Sbjct: 61  KSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFIDSKGNFGKQYSRDMKFAAPR 119

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K    +  D+ K+TVDF  NYDG+ +EPV+L   +P++LVN   GIAVGMA+N
Sbjct: 120 YTEAKLDKLCEEIFKDIDKNTVDFVDNYDGTMKEPVLLPTTFPSILVNSNQGIAVGMASN 179

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSI 248
           I + NL E+     A+ID+ +I    + + ++ PDF +G  +I     I++ Y  GRGS 
Sbjct: 180 ICSFNLEEICKTTSALIDDENI---VIEDYLQAPDFSSGGQLIYSAKEIRDIYNNGRGSF 236

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R   + +  +     I + EIPY     A++++I EL++  +I +I D+RDE+D  G 
Sbjct: 237 KVRAKYNYDNKNN---CIEIVEIPYTTTVEAIIDQIIELIKGGKIKEITDVRDETDLSGL 293

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ ++L++    D+++ +L++ T LQ  F+ N   L   +P    +  IL  +++FR + 
Sbjct: 294 KLTLDLRKNTDPDMLMKKLFKLTPLQDSFNCNFNILINGRPRVMGVRTILNEWLSFRVDC 353

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  Y + K  D+ H+L+GL   + ++D+ + IIR         +E+M        + 
Sbjct: 354 IKRQILYDIQKKSDKLHLLMGLKKILLDIDKAIEIIR------KTEQEVMV-------VP 400

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN---ELNSLGIEIK 485
           +LI   D             + ++Q   I E++L     L ++ I N   E +SL  EI 
Sbjct: 401 NLISGFD-------------IDQIQAEYIAEIKLR---NLNKEYILNRVGETDSLIKEIA 444

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVS 543
           E  D   +  ++  II+++L  +  +   PRRT I+  E + ++  E  I   ++ + ++
Sbjct: 445 ELKDTHGNHKKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKIFLT 504

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
              Y+K++PL   RA            ++DED +           +L F++   VYK K+
Sbjct: 505 EQNYLKKIPLVSLRANPEHK-------LKDEDTIVQEIETHNKADLLLFTNKFNVYKSKI 557

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     + G+ L N+L L+  E+I  I      E      Y++F  ++G   +  LS
Sbjct: 558 YEIPDCKASSLGEYLTNLLGLDSDEKIIYITATDNYEG-----YMLFFYENGKGAKIDLS 612

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+A    +   ++ +   T++ +++  + + + + F   +I V   +NS G
Sbjct: 613 GYATKTNRKKLANAYYNGSPLIRMFFATEDIELIAISSINKMLVFNTESIGVKTTKNSQG 672

Query: 724 VRGISLAKG 732
           V+ ++  KG
Sbjct: 673 VQILTSKKG 681


>gi|121591636|ref|ZP_01678880.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
 gi|121546507|gb|EAX56720.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
          Length = 367

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/360 (43%), Positives = 239/360 (66%), Gaps = 14/360 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKAFVAFREE 367
           + + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  +++FR +
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRK 361


>gi|38677888|emb|CAE30284.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 222

 Score =  303 bits (775), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/222 (63%), Positives = 178/222 (80%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  
Sbjct: 1   IGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG
Sbjct: 61  ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 120

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS 
Sbjct: 121 VLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSS 180

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 222


>gi|237841329|ref|XP_002369962.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
 gi|211967626|gb|EEB02822.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
          Length = 1278

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/392 (40%), Positives = 241/392 (61%), Gaps = 32/392 (8%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q+ +  +  + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +  R  LIEG GNFGS
Sbjct: 1   MQQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           VDGDPPAA RYTECRL +     LL +L    V FRPN+D + +EPVV  A  P VL+ G
Sbjct: 61  VDGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I 
Sbjct: 121 SSGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIP 180

Query: 239 NAYATGRGSIVIRGVSHIE---------------------KTSGDR---------EQIVV 268
            AY  GRG +++RG  H+E                     +   DR          ++V+
Sbjct: 181 GAYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNIRNGRKNERRLVI 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PY VNK+ +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L 
Sbjct: 241 TELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLL 300

Query: 329 RYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++T+LQ    ++++AL  G KP RF+L  +L +++AFR   + R       + + R+H+L
Sbjct: 301 KHTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLL 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            GL  AV+ +D+VV+ +R S + + A+++L +
Sbjct: 361 EGLLRAVSLMDDVVQTVRESLSADEAKQKLTE 392



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 22/138 (15%)

Query: 691  TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            T    I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V         
Sbjct: 1004 TNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVV-------PP 1056

Query: 751  RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
             +   K  +  R+   GD++E  S KN+SS E              E  +L V+  GFGK
Sbjct: 1057 EVKEDKAKTESRK--EGDSDETQS-KNESSNEK------------AEPSLLIVTAAGFGK 1101

Query: 811  RTSSYDFRISNRSGKGIR 828
            R      R+  R G G+R
Sbjct: 1102 RIRVSALRMQRRRGVGVR 1119


>gi|226201187|gb|ACO37586.1| DNA gyrase subunit A [Aeromonas taiwanensis]
          Length = 235

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 179/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + P +LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  + GPDFPTG +I GR+GI  AY TGRGSI +R  + +E
Sbjct: 181 TIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 219/703 (31%), Positives = 336/703 (47%), Gaps = 81/703 (11%)

Query: 29   YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
            Y +Y + V+  RAIPD+RDG+KPVHRRIL+ M  + +  N K  K AR+ G+V+GKYHPH
Sbjct: 694  YRSYGLKVVGDRAIPDVRDGMKPVHRRILYAMEMLKLRSNTKTKKSARVVGDVIGKYHPH 753

Query: 89   GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD-DLG 147
            G++A+Y A+ RMAQ W +R  LI+GQGNFGS+DGD  AA RYTE R+   A  +L  DL 
Sbjct: 754  GDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSIDGDSAAAMRYTEARMTPIAEAILSGDLK 813

Query: 148  KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHNLGEVVDGCVAV- 205
                 ++PNYD   +EP+VL A +P V++N   G  AVG  T IP+HNL E++  C+A+ 
Sbjct: 814  DGITMYQPNYDDQDKEPMVLPAPFPLVMMNSSTGNPAVGFKTEIPSHNLTELLGACIALA 873

Query: 206  --------IDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHI 256
                    +++P  D   + + I  PDFP G +I      ++  YA G G +++R   H+
Sbjct: 874  KKRGRTGAMESP-TDFRDVRKHITAPDFPGGGIIANTHEELEAMYAKGYGKMLLRSKWHV 932

Query: 257  EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------IADLRDESDRQ-GYR 309
            E       QIVVTEIPY + K+ +L ++   + +K I +      I DLRDES  + G R
Sbjct: 933  ETLPKGLWQIVVTEIPYGIEKSPLLIEMGARISDKTIAESRQLPMIDDLRDESSAEDGIR 992

Query: 310  VVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK----------PERFTLIGIL 358
            +V+  K R    + I+  L+  T+LQ        AL  +           P  F L  ++
Sbjct: 993  IVLFPKSRNLDPEQIMLHLFSATNLQVTIQYATYALEKWHDTPNGERYRLPSLFPLDKMI 1052

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            ++F+ +R+E+V+ R K  L +   R H+L GL +A  N+ E+V II  +  P    R ++
Sbjct: 1053 RSFLDYRQELVMSRAKVRLAEITARLHILDGLLLAYPNIREIVEIILDNDEP----RPII 1108

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
               ++                         L+E+QT AIL +RL++L  L +  ++ E +
Sbjct: 1109 MEKYS-------------------------LTEIQTDAILAIRLSQLRKLEQMKLQGEHD 1143

Query: 479  SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVR 535
             L  E      +L   +     I  EL     +    RRT +         M  E  + R
Sbjct: 1144 RLSEEAAGLHQVLDDDAHRWKHITGELRDALKKFGDERRTIVDPDAPKSRPMSREQIVSR 1203

Query: 536  EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            E +   +S  G++K          R      S V  R+ D + D     T   ++     
Sbjct: 1204 EPVTAILSKQGWLK--------GMRGSSIDVSSVRFRESDKLLDSAAGHTTDQLILIGRT 1255

Query: 596  GFVYKEKVWRLPIGSPQARGKALINILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKH 654
            G  +      LP G       +   + S+N+   R+  + P  E        Y+V AT  
Sbjct: 1256 GRAFSMLAADLPSGRGNGEPVSKHFVFSINEAPTRMVMVKPDAE--------YLV-ATTA 1306

Query: 655  GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
            G+  R   SD +  N+ GK  +   +   +L +      +D  
Sbjct: 1307 GHAFRAMGSDMVSANKKGKAFINFPASSRLLCIREIEAAHDAF 1349


>gi|289677157|ref|ZP_06498047.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 358

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 165/359 (45%), Positives = 233/359 (64%), Gaps = 12/359 (3%)

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--GDREQ 265
           NP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  S +E     G R+Q
Sbjct: 1   NPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGGRQQ 60

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVVIEL+RG   +VILN
Sbjct: 61  IVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEVILN 120

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV RRT + L KAR+R H
Sbjct: 121 NLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGH 180

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID---------D 436
           +L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + ++++            D
Sbjct: 181 ILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPENLD 240

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  +I E + IL+S +R
Sbjct: 241 PQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATR 299

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+SH GY K  PL+V
Sbjct: 300 LMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQPLAV 358


>gi|226201191|gb|ACO37588.1| DNA gyrase subunit A [Aeromonas sanarellii]
          Length = 235

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 179/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + P +LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  + GPDFPTG +I GR+GI  AY TGRGS+ +R  + +E
Sbjct: 181 TIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|323694736|ref|ZP_08108894.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501173|gb|EGB17077.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 347

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 152/323 (47%), Positives = 219/323 (67%), Gaps = 7/323 (2%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I +   ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 5   IITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAEEVYLKDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A IDNP+     L++I+ GPDFPTG +I  ++ + N Y TG G I +R   
Sbjct: 184 LGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIANKSDLLNIYETGSGRIKLRAKL 243

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  K   D+++++++EIPY +  A +   L  IA+LV  K++ D+ D+ ++S+++G R
Sbjct: 244 EVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTS 332
           +V+ELK+ A  + I N LY+  S
Sbjct: 304 IVLELKKDADIEKIKNILYKKRS 326


>gi|218134383|ref|ZP_03463187.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989768|gb|EEC55779.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 511

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 298/568 (52%), Gaps = 89/568 (15%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +Q  F V M+AL   +P+   L+ +L  ++  ++EV+ RRT+Y LNKA +RAH+L GL I
Sbjct: 1   MQDTFGVIMLALVDNQPKVLNLLDMLIYYLRHQKEVITRRTQYDLNKAEERAHILQGLMI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+D V+ IIR S N +TA+  LM+                             LS+V
Sbjct: 61  ALDNIDRVISIIRGSENVQTAKESLMKE--------------------------FELSDV 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AI+++RL  LTGL R  +  E   L  +I+E   IL+   +LLG+I+ E+L + D+ 
Sbjct: 95  QAQAIVDMRLRALTGLERAKLEAEYAELIKKIEEYKAILADEKKLLGVIRTEILVIADKY 154

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I     D+  ED I  E +V+  ++LGY+KR+ L  ++AQ RGGKG  G+   
Sbjct: 155 GDDRRTSIGFDEFDISMEDIIPDEPVVIARTNLGYIKRMTLDNFKAQHRGGKGIRGMQTI 214

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+D++ DLF+ ++H  ++FF++ G  Y+ K + +P     ARG A+IN+L L  GE IT 
Sbjct: 215 DQDYIEDLFMTTSHHYLMFFTNTGRAYRMKAYEIPEAGRTARGTAVINLLQLQPGETITA 274

Query: 633 IMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
           ++P  E    +N N Y+  AT++G V++ K++++  I ++G  A+ +   DE++ V+   
Sbjct: 275 VIPIRE----YNDNNYLFMATRNGIVKKTKVTEYSNIRKNGIQAITIRDNDELIEVKLTD 330

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
              DI+L TKLG C+RF  + +R   GR S+GV G+ L   DQV+ M I    D+     
Sbjct: 331 DTKDIMLVTKLGMCIRFKETDVRP-TGRTSMGVIGMDLMDEDQVVGMQIDSQGDS----- 384

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                           +L VSEKG GKR
Sbjct: 385 ------------------------------------------------LLIVSEKGLGKR 396

Query: 812 TSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           T   +F   +R GKG++     KINE  G +V V  V+D  +I+L++ +G +IR+   +I
Sbjct: 397 TLIEEFTTQHRGGKGVKC---YKINEKTGNVVGVKAVDDTREIMLITTEGIIIRIKAQDI 453

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIR 898
            I  R T GV + +      V SV ++R
Sbjct: 454 SILGRITSGVKLINLEDGVTVASVSKVR 481


>gi|37624530|gb|AAQ96061.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 215

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 173/215 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EVV
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVV 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           +GC+A ID+ +I ++ LME I GPDFPT A+I GR
Sbjct: 181 NGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGR 215


>gi|313192117|emb|CBX19918.1| gyrase A [Clostridium perfringens]
          Length = 249

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/250 (56%), Positives = 195/250 (78%), Gaps = 1/250 (0%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDN
Sbjct: 1   NTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDN 60

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+ +G R +I+V
Sbjct: 61  PELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEEENG-RHKIIV 119

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY
Sbjct: 120 TELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLY 179

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           ++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L 
Sbjct: 180 KHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILE 239

Query: 389 GLAIAVANLD 398
           GL IA+ N+D
Sbjct: 240 GLIIALDNID 249


>gi|307692620|ref|ZP_07634857.1| DNA gyrase/topoisomerase IV subunit A [Ruminococcaceae bacterium
           D16]
          Length = 750

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 223/716 (31%), Positives = 363/716 (50%), Gaps = 55/716 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT+ ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M QM +    +  K A + G+
Sbjct: 30  ITETLELNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKLLGGAR-TKSANVVGQ 87

Query: 81  VMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG+AAIYD + R+++ + +L    ++ +GNFG V       AA RYTE RL  
Sbjct: 88  TM-KLNPHGDAAIYDTMVRLSRGYGALLHPFVDSKGNFGKVYSRDMAWAASRYTEVRLDA 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ +DTVDF  NYDG  +EP +L   +PNVLV+   GIAVGMA+N+   NLGE
Sbjct: 147 ICGELFRDIDQDTVDFVDNYDGKMKEPTLLPTTFPNVLVSANQGIAVGMASNLCGFNLGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V D  +A + +P+ DL   M  ++GPD PTG  +I     +   Y TGRGS  +R     
Sbjct: 207 VCDTTIAYLKDPECDL---MATLKGPDLPTGGELIYDEKALGEIYRTGRGSFKVRSKWRY 263

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            K+      I + EIPY     A+++K+AEL++  +I +IAD+RDE+D  G ++ I+LKR
Sbjct: 264 LKSEN---LIEIYEIPYSTTSEAIMDKVAELIKAGKIKEIADMRDETDLSGLKLTIDLKR 320

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D ++ +L+R T L    S N   L    P    +  IL+ + A+R + V RR  + 
Sbjct: 321 GTDPDKLMAKLFRATPLMDSQSCNFNILIAGMPRVMGVREILEEWTAWRMDCVRRRVYHE 380

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           + K  D+ H+L GL   + ++D  + IIR     ET          +A  + +L+     
Sbjct: 381 MKKKEDKLHLLKGLRRILLDIDRAIAIIR-----ETEE--------DAEVVPNLM----- 422

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I      Y+++++ R I +  + + T         E+ +L  EI +    ++   R
Sbjct: 423 IGFGIDQIQAEYVADIRLRNINKEYILKRT--------QEVEALEGEIADLQATVNDPKR 474

Query: 497 LLGIIKQELLSVKDELDTPRRTRIV-EGLLDME-DEDCIVREDMVVTVSHLGYVKRV-PL 553
           +  II +EL  VK +   PRRT IV E +L+ E  ED      + + +S  GY+K++ P 
Sbjct: 475 IRKIITKELTDVKKKYAQPRRTDIVYEHMLEEEPQEDETPDYPVNLFLSREGYLKKITPQ 534

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S+  A  +  K   G  ++ E         +    +L F+     YK ++          
Sbjct: 535 SLRMASDQKYKEGDGPFLQWE--------ATNRDELLVFTDKQQCYKTRLSEFDDSKASV 586

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  L   LS+   ER+      P D S      ++F  ++G V R +LS +    R  K
Sbjct: 587 LGDYLPTKLSMEAEERVLWAC-IPGDYSG----QLLFFFENGKVARVELSAYQTQTRRKK 641

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +      +  ++S     ++ ++ + +  G+C+ F  +A+     R + GV  ++L
Sbjct: 642 LTGAYSDKSPLVSALLLREDLEMAVYSSDGRCMIFHTAALAPKTTRTTQGVNVMAL 697


>gi|199612847|gb|ACH91611.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 228

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 177/226 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 226


>gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 303

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 144/280 (51%), Positives = 195/280 (69%), Gaps = 1/280 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M +MG+     + KCA+I GEVMG 
Sbjct: 5   LEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGEVMGN 64

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++DGD PAA RYTE ++   +  LL+
Sbjct: 65  YHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSELLLE 124

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            + +D VDFR  YD S  EPVVL   +PN+L NG  GIAVGMAT+IP+HN  E+ D  + 
Sbjct: 125 GIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCDAALH 184

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +I +PD  ++ L+E I GPDFPTG  +I  R  I  +Y TGRG   +R     E      
Sbjct: 185 LIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDLGRGG 244

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+RDES
Sbjct: 245 YQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDES 284


>gi|256483424|gb|ACU81114.1| DNA gyrase subunit A [Bacillus sp. LL3]
          Length = 230

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 180/226 (79%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ K
Sbjct: 1   GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 60

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +N
Sbjct: 61  DTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSEN 120

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 121 PEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 180

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIE+
Sbjct: 181 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIEI 226


>gi|117654209|gb|ABK55535.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654213|gb|ABK55537.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654219|gb|ABK55540.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654221|gb|ABK55541.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654223|gb|ABK55542.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654225|gb|ABK55543.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654227|gb|ABK55544.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654229|gb|ABK55545.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654231|gb|ABK55546.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654233|gb|ABK55547.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654235|gb|ABK55548.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654237|gb|ABK55549.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  296 bits (759), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 139/223 (62%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|117654215|gb|ABK55538.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654217|gb|ABK55539.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/223 (62%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LM+II GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMDIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|117654343|gb|ABK55602.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 223

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVI 223


>gi|117654265|gb|ABK55563.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654269|gb|ABK55565.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654271|gb|ABK55566.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654273|gb|ABK55567.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654275|gb|ABK55568.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654277|gb|ABK55569.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654311|gb|ABK55586.1| DNA gyrase subunit A [Bacillus sp. 3EC2A3]
          Length = 223

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|289449920|ref|YP_003475278.1| DNA gyrase/topoisomerase IV subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184467|gb|ADC90892.1| DNA gyrase/topoisomerase IV, A subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 727

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 219/726 (30%), Positives = 370/726 (50%), Gaps = 60/726 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I+D ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +MG+    +  K A + G+
Sbjct: 12  ISDTLEKNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLSGSR-TKSANVVGQ 69

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERYTECRLQ 136
            M K +PHG+AAIY+ + R+ + + SL    ++ +GNFG   S D    AA RYTE +L 
Sbjct: 70  TM-KLNPHGDAAIYETMVRLTRGNASLLHPYVDSKGNFGKQYSRDMQF-AASRYTEVKLD 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K    L   + KD V F PNYD + QEP +L A +P+VLVN   GIAVGMA+NI   NL 
Sbjct: 128 KICTELFRAIDKDVVTFTPNYDATMQEPTLLPATFPSVLVNANQGIAVGMASNICPFNLR 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV    +A I NPD  ++   + I+GPDFP G   I+ R  +   + +GRG++ +R    
Sbjct: 188 EVCSATIAYIKNPDCVIE---KYIKGPDFPGGGEFIVDREELAKVFDSGRGTLRLRARYR 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           ++  +     I + EIPY     A+L+ +AELV+  +  +I+D+RDE+D  G ++ IELK
Sbjct: 245 VDLKN---RLIEIYEIPYSTTVEAVLDNLAELVKAGKAKEISDVRDETDLNGLKLTIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  + ++N+L++ TSLQ+ F+ N   L   +P    +  ++  ++ FR   V R T +
Sbjct: 302 RAAEPEALMNRLFKQTSLQANFACNFNVLIDGRPRVLGVKQLIGEWLNFRRTCVRRETAF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L + + + H+L GL   + ++D+ +RIIR + N ET                   D+I 
Sbjct: 362 DLQEKQAKLHLLEGLNTIMLDIDKAIRIIRETEN-ET-------------------DVIP 401

Query: 436 D--SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +    + I +    Y++E++ R      L R   L R   R+EL     EI +  + L+S
Sbjct: 402 NLCRGFAIDAVQAEYIAEIKLR-----NLNREYLLKRTADRSELTE---EIAQLQNRLAS 453

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S L   I + L  V ++    RRT +++   + ++  ED I    +   ++  GY+K++
Sbjct: 454 TSLLDAEIIRTLQQVAEKYGQDRRTVLIDAGEITEITGEDLIEDYRLKYFLTAHGYLKKL 513

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+  R+          + ++DED +           ++ F+    VYK     +    P
Sbjct: 514 PLTSLRSA-------GELKIKDEDEIISEIEAGNRDEIMVFTDQANVYKISGHEIKDCKP 566

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
              G+ L  +L     E++  +    E    +     +FA  +G V R  +S +    + 
Sbjct: 567 SELGEYLPGLLDFAPEEKVIYLHVPGEYVGDF-----MFAFANGKVARVPVSAYKTKTKR 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            K+      +  ++ +E   +    +L + L + + F    I     RN+ GV+ +S AK
Sbjct: 622 RKLVAAYSDKSPLVGIEFAPENKSYVLISNLSKVLIFDSEQIPAKVTRNNQGVQVMS-AK 680

Query: 732 GDQVIS 737
            + V++
Sbjct: 681 RNSVVN 686


>gi|117654189|gb|ABK55525.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654191|gb|ABK55526.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654193|gb|ABK55527.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654195|gb|ABK55528.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654197|gb|ABK55529.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654199|gb|ABK55530.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654201|gb|ABK55531.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654203|gb|ABK55532.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654205|gb|ABK55533.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654207|gb|ABK55534.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|153820158|ref|ZP_01972825.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
 gi|126509298|gb|EAZ71892.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
          Length = 343

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 150/332 (45%), Positives = 223/332 (67%), Gaps = 11/332 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 248 AVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLFSVNM 341
           + + R      D+++N L+  T L+  F VN+
Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNL 334


>gi|117654279|gb|ABK55570.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654283|gb|ABK55572.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654285|gb|ABK55573.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654287|gb|ABK55574.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654291|gb|ABK55576.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654307|gb|ABK55584.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654309|gb|ABK55585.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654341|gb|ABK55601.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 223

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|313192107|emb|CBX19913.1| gyrase A [Clostridium perfringens]
          Length = 250

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 192/251 (76%), Gaps = 1/251 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 1   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 120

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 121 VVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 179

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 180 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 239

Query: 369 VVRRTKYLLNK 379
           + RRT++ LNK
Sbjct: 240 ITRRTQFELNK 250


>gi|89101302|ref|ZP_01174113.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89083983|gb|EAR63173.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 610

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 208/678 (30%), Positives = 345/678 (50%), Gaps = 92/678 (13%)

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D  +D LME+I+GPDFPTG  I G  GIK AY TG+G I+IRG S +E   G R+QIV+T
Sbjct: 1   DCTVDELMEVIKGPDFPTGGTIQGAEGIKKAYETGKGKIIIRGKSEVEDIRGGRQQIVIT 60

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIP++VNKA +++KI EL  ++++  I+++RDE+DR G R+VIELK+ A A  +LN LY+
Sbjct: 61  EIPFEVNKANLVKKIDELKMDRKVEGISEVRDETDRTGLRIVIELKKDADAAGVLNYLYK 120

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            T LQ  ++ NMVA++   P+   L  +L A++  ++EVV RR++Y L KA+DR H++ G
Sbjct: 121 NTDLQIPYNFNMVAISNRHPKLLGLREMLDAYIGHQKEVVTRRSQYELKKAQDRQHIVEG 180

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L  A++ LDEV+  IR S +   A+  L+ +                             
Sbjct: 181 LMKALSILDEVIAAIRASKDKRDAKDNLISQ--------------------------FGF 214

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +E Q  AI+ L+L RLT      +R E   L  ++ E L IL S  +LL +IK++L  VK
Sbjct: 215 TEPQAEAIVSLQLYRLTNTDITALRAEAEELAQKVAELLSILQSEKKLLSVIKKDLKDVK 274

Query: 510 DELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                 RR+ I   + +++   E  I  ED++VTV++ GYVKR     + A      G  
Sbjct: 275 KRFADARRSVIEAEIEEIKINLEVLIASEDVIVTVTNEGYVKRTSQRSFAASNGQDFG-- 332

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              M+D D +     ++T   +L F+  G      V  LP    +  G+ + N++ +++ 
Sbjct: 333 ---MKDSDRLMSKLDMNTTDVLLVFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRT 389

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEIL 685
           E I   +P  + E+     Y++F TK+G V++++L ++ +  R  K  +A+ L + D + 
Sbjct: 390 ESIIGAIPVKDFEAE---AYLMFITKNGMVKKSELKNY-KAQRYSKPLVAVNLKNDDVVT 445

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            V     + D++L T +G  + FP   + V   R + GV+GI+L  GD V+S  +V +  
Sbjct: 446 DVFLTDGKQDLMLATSMGYALWFPEEEVSVVGAR-AAGVKGINLKDGDYVVSGKLVSN-- 502

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                            +KE+ ++  ++
Sbjct: 503 -------------------------------------------------VKEEAVVIATQ 513

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+    +F  ++R+ +G+      K N    +V +    ++D+I + S+KG + +V
Sbjct: 514 RGAIKKMKLAEFERTSRAKRGLVMLRELKANP-HRVVGMVLAKNHDKIFIESEKGVIEQV 572

Query: 866 PVNEIRIASRATKGVVIF 883
             +++R   R + G  I 
Sbjct: 573 SASDLRFNDRYSNGSFIL 590


>gi|117654167|gb|ABK55514.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654169|gb|ABK55515.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654171|gb|ABK55516.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654173|gb|ABK55517.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654175|gb|ABK55518.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654177|gb|ABK55519.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654179|gb|ABK55520.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654181|gb|ABK55521.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654185|gb|ABK55523.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654187|gb|ABK55524.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654281|gb|ABK55571.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D+ +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|261367452|ref|ZP_05980335.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
 gi|282570224|gb|EFB75759.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
          Length = 747

 Score =  293 bits (751), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 225/733 (30%), Positives = 363/733 (49%), Gaps = 66/733 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    IT+ ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A
Sbjct: 28  IIETPITETLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSA 85

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTE 132
            I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYTE
Sbjct: 86  NIVGSTM-HLNPHGDAAIYDTMVRMGRSNESLLVPFVDSKGNFGKAYSRDMAYAAARYTE 144

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+     L  D+ KDTVDF PNYDG+  EP +L   +P +L N   GIAVGMA+NI +
Sbjct: 145 AKLEPVCEELFRDIDKDTVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMASNICS 204

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
            NL E+ +  +A++ +   DL    EII  PDF  G  IL     +KN    GRGS+ +R
Sbjct: 205 FNLEELCNATIALMKDAKADLK---EIIPAPDFVGGGTILYDAAEMKNVLENGRGSVRVR 261

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                +KT+     I VT IP      A+++KI ELV+  +I +I+D+RDE+D  G ++ 
Sbjct: 262 AQWSYDKTNN---CIDVTHIPPTTTVEAIMDKITELVKLGKIREISDMRDETDLNGLKLT 318

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKRG   D ++ +L++ T L+  F+ N   L   +P+   +  IL  ++AFR E V R
Sbjct: 319 IDLKRGQDPDKLMARLFKATPLEDSFACNFNVLIAGQPKVLGVRDILLEWIAFRAECVRR 378

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L   + R H+L GL   + ++D+ + I+R                 N ++  +++
Sbjct: 379 RTYYDLQGKQKRLHLLQGLKAILLDIDKAIEIVR-----------------NTAEEAEVV 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN---ELNSLGIEIKECL 488
                 +  IG      + EVQ   + E++L     L R+ I     E+  L   I++  
Sbjct: 422 -----PNLMIG----FGIDEVQAEYVAEIKLRH---LNREYILKRTAEIEELESAIEDLQ 469

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHL 545
           D+L   +R+  II  EL  V  +   PRR  I   V      E E  I    + +  +  
Sbjct: 470 DVLKRPARINKIIMNELSDVAKKYGKPRRCEILYEVPASEAEEPEQQIPDYPVHLFFTRD 529

Query: 546 GYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV--LFFSSLGFVYKEK 602
           GY K++ P S+    R  G+ +    ++D D V  LF   +  SV  LFF++   VYK  
Sbjct: 530 GYFKKITPQSL----RMSGEQK----LKDGDEV--LFTCESTNSVELLFFTNHHQVYKSH 579

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +          G  + + L + +GE +   M    D   W    ++F  ++G   +  L
Sbjct: 580 AYDFADSKASVLGDYVASSLGMEEGE-VPLYMVVTPDYKGW----MLFFFQNGKCAKVPL 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S +       K+      + E+  +    +E ++ + T   + +    + I   + R++ 
Sbjct: 635 SSYETKQNRRKLLKAYSDKAELACMRYLPEETELAIFTSNNRLLLAGSALIPEKSTRDTA 694

Query: 723 GVRGISLAKGDQV 735
           GV  +SL K  ++
Sbjct: 695 GVNVVSLKKNARI 707


>gi|317498961|ref|ZP_07957244.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893794|gb|EFV15993.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 323

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 147/333 (44%), Positives = 215/333 (64%), Gaps = 17/333 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+EHII ++            ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M
Sbjct: 1   MSEHIIKAE-----------FSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSM 49

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+ +++ + K ARI G+ MGKYHPHG+++IY++L  M+QD+   + L++G GNFGS+
Sbjct: 50  DELGLRYDRPHRKSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSI 109

Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RLQK      L DL K+ VDF  N+D + +EP VL  + PN+LVNG 
Sbjct: 110 EGDGAAAMRYTEARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGA 169

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM T+IP HNLGEVVD   A +    I  + LME I GPDFPTG +++ +  + N
Sbjct: 170 DGIAVGMTTSIPPHNLGEVVDAVKAYMRKESITNEELMEYIEGPDFPTGGLVINKKDLLN 229

Query: 240 AYATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIV 294
            Y++G G + +RG    E  K  G+++++V++EIPY +   N +  L     L+  K   
Sbjct: 230 IYSSGTGKLKLRGKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTT 289

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           DI D+ +ES + G R+V+EL++GA  + +   L
Sbjct: 290 DILDISNESSKDGIRIVLELRKGADVERLKKSL 322


>gi|117654313|gb|ABK55587.1| DNA gyrase subunit A [Bacillus sp. 3EC5B1]
          Length = 223

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRXPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|46019102|emb|CAE52015.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019122|emb|CAE52025.1| gyrase subunit A [Bacillus sonorensis]
          Length = 213

 Score =  293 bits (750), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 134/213 (62%), Positives = 172/213 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
             +  I++TEIPYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKI 213


>gi|117654183|gb|ABK55522.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD + R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDLNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|167772152|ref|ZP_02444205.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
 gi|167665950|gb|EDS10080.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
          Length = 745

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 223/730 (30%), Positives = 361/730 (49%), Gaps = 71/730 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I   ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +MG+    +  K A + G 
Sbjct: 31  IVSTLEENYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLTGAR-TKSANVVGA 88

Query: 81  VMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG+ AIY+ L R+++   +L    ++ +GNFG         AA RYTE +L  
Sbjct: 89  TM-KLNPHGDQAIYETLVRLSRGCEALLHPYVDSKGNFGKAYSRDMAYAASRYTEVKLDP 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ L  D+ +DTVD   NYD + +EP +    +P+VLVN   GIAVGMA++I   NL E
Sbjct: 148 IANELFRDIDEDTVDMVDNYDNTMKEPTLFPVTFPSVLVNSNIGIAVGMASSICPFNLAE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V +  +AV+ NP+ DL   +E +  PDFP G  ++     ++  Y TGRG I +R     
Sbjct: 208 VCETTIAVLKNPEHDL---LETLHAPDFPGGGYIVYDEQALRRIYDTGRGGIRVRA---- 260

Query: 257 EKTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            + + DR    I VTEIP      A+++K+ +LV+  +I +IAD+RDE+D  G ++  +L
Sbjct: 261 -RYTYDRANNCIDVTEIPPTATVEAIMDKVVDLVKAGKIREIADMRDETDLNGLKLTFDL 319

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   D ++ +L++ T L+  FS N   L G  P    +  +++ + AFR E V RR  
Sbjct: 320 KRGVDPDRLMQRLFKLTPLEDSFSCNFNVLIGGMPRVCGVRTLIEEWAAFRSECVRRRVF 379

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             LNK +++ H+L GL+  + ++D+ VRI+R +         LM                
Sbjct: 380 RQLNKKKEKLHLLEGLSRILLDIDKAVRIVRETQEEREVVPNLM---------------- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI---RNELNSLGIEIKECLDIL 491
                 IG      + EVQ   + E+RL +L    R+ I     E+  L  +I E   IL
Sbjct: 424 ------IG----FGIDEVQAEYVAEIRLRQLN---REHILKRTEEIGQLRDDIAEMESIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL-----G 546
             R ++  II  EL +V  +   PRR+ +       E ED    E       HL     G
Sbjct: 471 EHREKIRAIIISELENVGKKYAKPRRSLL---YYPTEGEDEAGEEPAPDYAVHLFFTREG 527

Query: 547 YVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           Y K++ P S+    R  G+ +    +++ D VT     + ++ +LFF+  G VYK K   
Sbjct: 528 YFKKITPQSL----RMSGEHK----LKEGDTVTQAVEATNNSDLLFFTDRGQVYKAKASD 579

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                    G  +   L +++GE     M    D +     Y++F  ++G   +  L+ +
Sbjct: 580 FDDTKASVMGDYIPARLGMDEGES-AVYMAVTADYAG----YMLFVFQNGKAAKVDLAGY 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                  K+     +   +  +    Q+ + LLT+  G+ +     A+ V   R++ GV 
Sbjct: 635 ATKTNRKKLVGAYSTASPLAGIFQLAQDAEYLLTSSAGRMLIVHTGAVAVKTTRSTQGVA 694

Query: 726 GISLAKGDQV 735
            ++L K + V
Sbjct: 695 VMTLKKNNFV 704


>gi|225851095|ref|YP_002731329.1| DNA gyrase subunit A [Persephonella marina EX-H1]
 gi|225644811|gb|ACO02997.1| DNA gyrase subunit A [Persephonella marina EX-H1]
          Length = 1217

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 325/610 (53%), Gaps = 52/610 (8%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL K A  +L D+ K+TVD + N+D S  EP VL A++PN++ NG  GIAVG++TNI
Sbjct: 534  TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIV 249
            P HN  EV +    + + P+  ++ L + I+GPDFPTG +++     I   Y  GRGS+ 
Sbjct: 594  PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            ++G + IE+  G+R +I++ EIPYQVNK  ++++IAELVR+ +   I+DLRDESDR G R
Sbjct: 654  VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            +V+ELKR A  + +L +LYR T LQ    +N+  L G +P+   L G+L+ F+  R +V+
Sbjct: 714  IVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLVGKQPKTVDLKGLLQEFIKHRVDVI 773

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RRT + L KA +R H++ GL  A+ N D V+ I+R S +  +AR +L++          
Sbjct: 774  TRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEE--------- 824

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               LS+ Q +AIL++RL+R T L  D +  E + L ++I+E   
Sbjct: 825  -----------------FELSDTQAQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQR 867

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED--MVVTVSHLGY 547
            ILSS    + +  +E+  + ++    R+T IVE     E E  +  E+  ++  +S    
Sbjct: 868  ILSSEEEKIRVFIEEIDELLEKFGDERKTVIVE-----EKEAGLTFEEHYILAVLSSGRI 922

Query: 548  VKRVPLSVYRAQRRGGKGRSGVV--MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            + R        +    K  + VV  ++  + +  +  V +   + F +  G  Y    W 
Sbjct: 923  LNRRIDDDADKKDIFQKVMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGKAY----WS 978

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            L    P+  G+     +++++GE + T     + E   + L+++  TK+G ++R    D 
Sbjct: 979  LVADLPKGEGR-----INIDEGEIVGTAF---KGEGEEDRLFIL--TKNGIIKRMSYEDI 1028

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               +++  I + L   D +++       + I + T+ G  + F  + +RV  G  + GV 
Sbjct: 1029 FYKSQNHSI-IPLAEDDCVVTAFADDHPSLIGVYTRKGDLLLFERNQVRV-TGDKAKGVE 1086

Query: 726  GISLAKGDQV 735
             I L +GD V
Sbjct: 1087 AIDLDEGDTV 1096



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 95/115 (82%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    I +E++++YL YA++VI+GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K A
Sbjct: 4   IIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           R+ GEV+GKYHPHG+ ++YDAL RMAQD++LR  LI+GQGNFGS+DGDPPAA RY
Sbjct: 64  RVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRY 118


>gi|150390856|ref|YP_001320905.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
 gi|149950718|gb|ABR49246.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
          Length = 930

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 210/725 (28%), Positives = 379/725 (52%), Gaps = 63/725 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I D ++++Y+ YA++VI+ RA+P++ DG KP HR++L+ M QMG+   K   K A I G 
Sbjct: 13  IEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGL-LTKGRSKSANIVGT 70

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYTECRLQK 137
            M K +PHG+ AIY+ + +M +    L    ++ +GNFG V       A+ RYTE +L+K
Sbjct: 71  TM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREASARYTEAKLEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               +  ++ K+ VDF  NYD + +EP +L   +PN+LV    GIAVGMA +IP+ NL E
Sbjct: 130 FTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHIPSFNLKE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V +  +A + + +IDL   +E ++ PDF TG  +I     +K  Y TGRG+  +RG    
Sbjct: 190 VCEATIAYLKDKEIDL---LEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFKVRGKYRY 246

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            K       I + EIPY  +  A++E I ELV++ +I +I D+RDE+D+ G ++ I+LKR
Sbjct: 247 VKADN---AIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLKITIDLKR 303

Query: 317 GASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           G + D ++ + +++T L+  F  N  + +NG+ P+   +  IL  ++AFR   + R+ ++
Sbjct: 304 GVNPDDLMVKFFKWTKLEDSFGCNFNILINGH-PKVMGVKEILDHWIAFRLSCLKRQVQF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            ++K  ++ ++L GL     N+ EVV +I+ +   +     LM++               
Sbjct: 363 EIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQ--------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAI-LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              + +      Y++E++ R++  EL L ++  +    I  EL  LG+       +L+  
Sbjct: 408 ---FDLNLAQAEYIAEIKLRSLNQELILKKIKEISA--IEKELKRLGM-------VLARE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRE-DMVVTVSHLGYVKRVP 552
           S+   II  +L  + +    PR+T I+ E  +++  E+ ++   +M + +++ GY+K++ 
Sbjct: 456 SKQNEIIVNDLKRISEAYGIPRKTDIINENEVEVLSEEILIENYNMKLFLTNEGYIKKIS 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  R+    G  +    ++D D++      +    VL FS+   VYK K + L      
Sbjct: 516 LASLRS---SGDHK----LKDNDYIVQEIDGTNRGEVLLFSNKETVYKIKAYELEDSKAS 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L N+L L+  E I  I+   ED       +++F  ++G   +  ++ +       
Sbjct: 569 NLGQYLNNVLGLSSDEIILHIV-CTEDYQG----HMLFFFENGKGAKIPITSYETKTNRK 623

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV------RG 726
           ++A        ++ + +  ++ +++ T+ L + + F    +     RNS GV      +G
Sbjct: 624 QLANAYSGDSPLVYISSIEEDLEMMATSNLNKTLIFNTEEMSPINSRNSKGVQVFKCKKG 683

Query: 727 ISLAK 731
           ISL K
Sbjct: 684 ISLKK 688


>gi|46019104|emb|CAE52016.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019106|emb|CAE52017.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019114|emb|CAE52021.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019118|emb|CAE52023.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/213 (62%), Positives = 172/213 (80%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+T
Sbjct: 121 DGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           S  +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|117654267|gb|ABK55564.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+  NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYXDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTXSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|117654289|gb|ABK55575.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGXGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVN A ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNNAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|117654211|gb|ABK55536.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y++  RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESHVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|163803901|ref|ZP_02197741.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
 gi|159172300|gb|EDP57188.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
          Length = 332

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 147/330 (44%), Positives = 221/330 (66%), Gaps = 11/330 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 9   GVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 128 AKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A +I  +  I+  Y +GRGSI +R
Sbjct: 188 HNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRSGRGSIKMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     
Sbjct: 248 AVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSV 339
           VV+        D+++N L+  T L+  + V
Sbjct: 303 VVVPKSNRVDCDLLMNHLFASTDLERSYRV 332


>gi|46019116|emb|CAE52022.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 132/213 (61%), Positives = 172/213 (80%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +
Sbjct: 1   KVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+
Sbjct: 61  MEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVI 120

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DG +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+T
Sbjct: 121 DGVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEET 180

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           S  +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SSGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|218677864|ref|ZP_03525761.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 241

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 147/224 (65%), Positives = 177/224 (79%), Gaps = 1/224 (0%)

Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD
Sbjct: 1   AMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++ISM IV H DA+  ER  Y+K  +A+RR    D E+I  +  + + EG +S+ER + L
Sbjct: 61  RIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEVL 120

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI
Sbjct: 121 RNREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQI 180

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +LVSD G LIRVPV  IRIASRATKGV IFST KDE+VVSVERI
Sbjct: 181 MLVSDGGQLIRVPVGGIRIASRATKGVTIFSTHKDEKVVSVERI 224


>gi|117654295|gb|ABK55578.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654297|gb|ABK55579.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654299|gb|ABK55580.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654303|gb|ABK55582.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654165|gb|ABK55513.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  290 bits (742), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  N 
Sbjct: 61  TIDYQDNYDGSEREPIVMXARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNX 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSXGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|295102725|emb|CBL00270.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 749

 Score =  290 bits (742), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 219/725 (30%), Positives = 360/725 (49%), Gaps = 54/725 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A I G 
Sbjct: 34  ITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLIKGAR-TKSANIVGS 91

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYTE +L+ 
Sbjct: 92  TM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLEG 150

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYDG+  EP +L   +P +L N   GIAVGMA NI + NL E
Sbjct: 151 VCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAE 210

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           + +  +A++ +   D+   M     PDF  G  IL     +++ +  GRGS+ +R  +  
Sbjct: 211 LCNTTIALMKDAKHDISTTMP---APDFVGGGQILYDEAQMRDIFENGRGSVKVR--ARY 265

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
               G+   I +T+IP      A+++KIAELV+  +I +I+D+RDE+D  G ++ ++LKR
Sbjct: 266 AAVPGE-NMIEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKLTLDLKR 324

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD ++ +L++ T L+  FS N   L   +P    +  IL+ + AFR E V RRT Y 
Sbjct: 325 GVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILQEWTAFRMECVRRRTYYD 384

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+    R H+L GLA  + ++D+ + IIR +         LM                  
Sbjct: 385 LHGKEKRLHLLKGLAAILMDIDKAIHIIRTTEEETEVVPNLM------------------ 426

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I      Y++E++ R +    + + TG        E+  L  +I +  DIL+  +R
Sbjct: 427 IGFGIDEVQADYVAEIKLRHLNREYILKRTG--------EIEQLEADIADLNDILAKPAR 478

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-EDMVVTV--SHLGYVKRVPL 553
           +  II +EL  V  +   PRR+ I+  L + E         D  VTV  +  GY+K++P 
Sbjct: 479 IRKIIMKELADVAKKYGQPRRSEILYDLPEEEGGAEEEAVPDYPVTVFFTREGYLKKIPP 538

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              ++ R  G  +    +++ D +        +   LFF+    VYK ++  L  G    
Sbjct: 539 ---QSLRTAGAHK----LKEGDEIVRQVETRNNVEALFFTDKQQVYKVRLAELEDGKVAQ 591

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  L   L +++GE I   M    D S     Y++F    G   +  LS +       K
Sbjct: 592 MGIYLPGRLGMDEGENILD-MVITSDYSG----YMLFFFAGGRCAKIPLSSYATKQNRRK 646

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +      ++ + ++    +E ++ + T  G+ +    + I     R+S GV  ++L K  
Sbjct: 647 LLKAYCDKEPLATLFFLPEETELAIRTSAGRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQ 706

Query: 734 QVISM 738
            + S+
Sbjct: 707 TIASV 711


>gi|160933743|ref|ZP_02081131.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
 gi|156867620|gb|EDO60992.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
          Length = 759

 Score =  290 bits (742), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 222/728 (30%), Positives = 367/728 (50%), Gaps = 61/728 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I   ++ +Y+ YA++VIL RA+P++ DG KP HR++L+ M +MG+  N    K A I G+
Sbjct: 44  IDHTLETNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGL-LNSGRTKSANIVGQ 101

Query: 81  VMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG  AIYD + R+++ + +L    ++ +GNFG         AA RYTE +L  
Sbjct: 102 TM-KLNPHGEGAIYDTMVRLSRGYEALLHPFVDSKGNFGKFYSRDMAWAASRYTEAKLDA 160

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  L  D+ KDTVDF  NYD + +EP +L A +P VLVN   GIAVGMA++I   NL E
Sbjct: 161 IAQELFRDIDKDTVDFVDNYDNTMKEPSLLPATFPTVLVNANTGIAVGMASSICPFNLKE 220

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V +  + +I +PD D+   M  +  PDFP G  +I  R  +K  YATGRG I +R     
Sbjct: 221 VCETTIGLIRDPDFDV---MSTLLAPDFPGGGQIICDRNALKQVYATGRGGIKVRARYSY 277

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           ++++     I VT IP      A++EKI ELV++ ++ +IAD+RDE+   G ++ I+LKR
Sbjct: 278 DQSAN---CIDVTSIPPTTTCEAIIEKIIELVKQGKLKEIADIRDETGLDGLKITIDLKR 334

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
               + ++ +L+R T L+  FS N   L    P    +  +L  ++AFR E V RRT + 
Sbjct: 335 SVDPEKLMLKLFRMTPLEDTFSCNFNVLIAGVPRVLGIRELLGEWIAFRIECVRRRTYFD 394

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K +D+ H+L GL   + ++D+ VRI+R +         LM                  
Sbjct: 395 LQKKKDKLHLLKGLKRILLDIDKAVRIVRETEEESEVVPNLM------------------ 436

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI---RNELNSLGIEIKECLDILSS 493
               IG      + E+Q   + E++L     L R+ I     E   L  EI E   ++ S
Sbjct: 437 ----IG----FGIDEIQAEFVAEIKLRH---LNREYILKRTQETEQLETEIAELQAVMDS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S++ GII  EL  V  +   PR++ +V    + + E ED I    + +  +  GY K++
Sbjct: 486 KSKVKGIIVSELNDVIKKYGRPRKSMLVYPGEIQEYEPEDDIPDYPVTLFFTKEGYFKKI 545

Query: 552 -PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+    R  G+ +    +++ED +      + +T +LFF+    VYK +        
Sbjct: 546 TPQSL----RMSGEQK----LKEEDSIVQTVEATNNTELLFFTDRCQVYKTRASEFADTK 597

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G  +   L  ++GE    ++   + +       ++F  ++G + +  L  +     
Sbjct: 598 ASVLGDFVAAKLGFDEGESAVAMIVTTDYKGC-----LLFFFENGKLAKVPLDSYATKTN 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             ++A     +  +  V    ++ + LLT+  G+ +     A+   A RN+ GV  ++  
Sbjct: 653 RKRLANAYSEKSPLCRVYHIQEDQEFLLTSSSGRMLLVHTGAVAEKATRNTQGVAVMTQR 712

Query: 731 KGDQVISM 738
           KG +++++
Sbjct: 713 KGHRLLNV 720


>gi|4007020|emb|CAA77112.1| topoisomerase IV [Campylobacter jejuni]
          Length = 366

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 226/370 (61%), Gaps = 13/370 (3%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           L++GQGN+     DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L
Sbjct: 61  LVDGQGNWRRSPDDPKSFAAMRYTESRLSKYSELLLSELGRGTADWVPNFDGTLQEPKML 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT 227
            AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD L++I++GPD+PT
Sbjct: 121 PARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPRTTLDQLLDIVQGPDYPT 180

Query: 228 GA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            A +I  R  I+  Y  GRGS+ +R V   E  +     +V++ +P QV+ A +LE+IA 
Sbjct: 181 EAEIITSRAEIRKMYEKGRGSVRMRAVWKKEDGA-----VVISALPQQVSGARVLEQIAA 235

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSV--NMV 342
            +R   +  + DLRDESD +    ++ + R    D+  ++N L   T L+  + +  NM+
Sbjct: 236 QMRNNNVPMVDDLRDESDHEKPTRLVIVPRSNRVDIDQVMNHLLATTELEKSYRIKLNMI 295

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            L+G +P    L+ IL  ++  R + V RR  Y L K   R H+L G  +   N++EV+ 
Sbjct: 296 GLDG-RPAVKNLLEILSEWLVLRRDTVRRRLNYRLEKVLKRLHMLEGFLVEFLNIEEVID 354

Query: 403 IIRFSPNPET 412
           II     P +
Sbjct: 355 IIHNEDEPNS 364


>gi|291542542|emb|CBL15652.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus bromii L2-63]
          Length = 747

 Score =  290 bits (741), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 214/728 (29%), Positives = 364/728 (50%), Gaps = 61/728 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I   ++ +Y+ YA++VIL RAIP++ DG KP HR++L+ M +MG+  N    K A I G 
Sbjct: 32  IVSTIRENYMPYAMSVILSRAIPEI-DGFKPSHRKLLYMMYKMGL-LNGGRTKSANIVGA 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG++AIYD + R+++ + +L    ++ +GNFG         AA RYTE +L  
Sbjct: 90  TM-KLNPHGDSAIYDTMVRLSRGYEALLHPYVDSKGNFGKFYSRDMAWAASRYTEAKLDA 148

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + L  D+ KDTVDF  NYD + +EP +L   +P+VLVN   GIAVGMA+NI + NL E
Sbjct: 149 ICNELFRDIDKDTVDFVDNYDNTMKEPSLLPVAFPSVLVNANTGIAVGMASNICSFNLRE 208

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           + +   A+I +PD D+ + +     PDF  G  +I     I   Y TGRGSI +R     
Sbjct: 209 ICETTAALIRDPDHDIKSTLP---APDFTGGCQIIYDENVINQVYETGRGSIKLRAKYVY 265

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +K++     I +  IP       ++EK+ +LV++ ++ +I+D+RDE+   G ++ I+LKR
Sbjct: 266 DKSAN---CIDILSIPATTTCEVIIEKVIDLVKQGKVKEISDIRDETGIDGLKITIDLKR 322

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD ++ +LYR+T+L+  ++ N   L    P    +  +L+ ++AFR E V RRT + 
Sbjct: 323 GVDADKLMTKLYRFTTLEDSYACNFNVLIAGVPRVLGVKALLEEWIAFRIECVRRRTYFD 382

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
            NK  D+ H+L GL   + ++D+ V+I+R +         LM                  
Sbjct: 383 RNKKADKLHLLRGLEKILLDIDKAVKIVRETDEESEVVPNLM------------------ 424

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI---RNELNSLGIEIKECLDILSS 493
               IG      + E+Q   + E++L     L R+ I     +L  L  EI E  +IL S
Sbjct: 425 ----IG----FGIDEIQAEYVAEIKLRH---LNREYILKRTKDLEDLEKEIAELDEILKS 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRV 551
           ++R+  II +EL S+ ++   PR++ I+   +   +E+ +   D  V +  +  GY K++
Sbjct: 474 KARIKTIIVKELKSIAEKYGQPRKSIIIYDDVARYEEETVEIPDYPVNLFFTKEGYFKKI 533

Query: 552 -PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+    R  G+ +    ++D D +      + +  +LFF+    VYK K        
Sbjct: 534 TPQSL----RMSGEQK----LKDGDEIIQELEFTNNCDLLFFTDKCQVYKAKADDFAQTK 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G  +   L  ++GE     M   +D        ++FA ++G   +  L  +     
Sbjct: 586 ASVLGDYVAAKLGFDEGENAVK-MVVTKDYKGM----LLFAFENGKAAKVPLESYATKTN 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             K+      +  ++ +    ++ ++L     G  +     A+ +   R++ GV  +   
Sbjct: 641 RKKLTGAYSDKSPLVGLLYMPEDEEVLFKASSGNMLLVHTGALALKTTRSTQGVAVLKPK 700

Query: 731 KGDQVISM 738
           KG ++ S+
Sbjct: 701 KGHRLFSI 708


>gi|154496378|ref|ZP_02035074.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
 gi|150274461|gb|EDN01538.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
          Length = 747

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 227/718 (31%), Positives = 367/718 (51%), Gaps = 58/718 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT+ ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M QM +    +  K A + G+
Sbjct: 31  ITETLEINYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKLLGGAR-TKSANVVGQ 88

Query: 81  VMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M K +PHG+AAIYD + R+++ + +L   L++ +GNFG V       AA RYTE RL  
Sbjct: 89  TM-KLNPHGDAAIYDTMVRLSRGYGALLHPLVDSKGNFGKVYSRDMAWAASRYTEVRLDG 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ +DTVDF  NYDG+ QEP +L   +PNVLV+   GIAVGMA+N+   NL E
Sbjct: 148 ICAELFRDIDQDTVDFVDNYDGTMQEPTLLPTTFPNVLVSANQGIAVGMASNLCGFNLAE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHI 256
           V D  V  + +PD DL A   +++ PDFPTG  +L     I   Y TGRGS  +R     
Sbjct: 208 VCDATVEYLKHPDCDLTA---VLKAPDFPTGGELLYDAAEIAQIYNTGRGSFKVRARWRY 264

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            K+      I + EIPY     A+++K+AEL++  ++ +IAD+RDE+D  G ++ I+LKR
Sbjct: 265 LKSEN---LIEIYEIPYSTTVEAIMDKVAELIKAGKVKEIADMRDETDLTGLKLTIDLKR 321

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D ++ +L+R T L   F+ N   L    P    +  IL+ + A+R E V RRT ++
Sbjct: 322 GTDPDKLMQKLFRATPLMDSFACNFNILIAGMPRVMGVREILEEWTAWRMEGVRRRTYFV 381

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           + K +++ H+L GL   + ++D  ++IIR     ET          +A  + +L+     
Sbjct: 382 MKKKQEKLHLLKGLKKILLDIDRAIKIIR-----ETEE--------DAEVVPNLM----- 423

Query: 437 SSYTIGSDGTMYLSEVQTRAI-LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             + I +    Y+++++ R I  E  L R+          E ++L  EI +  DI+S+  
Sbjct: 424 IGFGIDNIQAEYVADIKLRNINKEYILKRI---------EETSTLEEEIADLQDIVSNPG 474

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGYVKRV- 551
           R+  II  EL +VK +   PRRT I+   + L + E E+ I    +   +S  GY K++ 
Sbjct: 475 RIKKIIIAELGAVKKKYAQPRRTEIIYEHQRLSEPEPEEEIPDYPVTAFLSREGYFKKIT 534

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P S+     +  K   G  ++ E         +    +L F+     YK ++        
Sbjct: 535 PASLRMNSEQKYKEGDGAWLQWE--------CTNRDELLVFTDRQQCYKTRMSDFDDAKA 586

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
              G  L   L +  GE +      P D S   NL   F  ++G   R +LS +    R 
Sbjct: 587 SVLGDYLPTKLEMEAGESVVWAC-VPGDYSG--NLLFFF--RNGKAARVELSAYQTQTRR 641

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            K+      +  + +     ++ ++ + +  G+C+ F  + +   A R + GV  ++L
Sbjct: 642 RKLTGAYSDKSPLAAALLLREDLELAVISTEGRCLIFHTALLAPKATRTTQGVNVMTL 699


>gi|257439263|ref|ZP_05615018.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
 gi|257198305|gb|EEU96589.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
          Length = 749

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 220/725 (30%), Positives = 357/725 (49%), Gaps = 54/725 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M  MG+    +  K A I G 
Sbjct: 34  ITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR-TKSANIVGS 91

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYTE +L+ 
Sbjct: 92  TM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLEG 150

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYDG+  EP +L   +P +L N   GIAVGMA NI + NL E
Sbjct: 151 VCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAE 210

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           +    VA++ +P  D+   M     PDF  G  IL     ++  Y  GRGSI +R   ++
Sbjct: 211 LCATTVALMKDPKHDISTTMP---APDFVGGGQILYDEAQMREVYENGRGSIKVRARYNV 267

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
               G+   + +T+IP      A+++KIAELV+  +I +I+D+RDE+D  G ++ ++LKR
Sbjct: 268 --VPGEN-MLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKLTLDLKR 324

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   + ++ +LY+ T L+  FS N   L   +P    +  IL+ + AFR E V RRT Y 
Sbjct: 325 GVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQPRVMGVREILQEWTAFRMECVRRRTYYD 384

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+    R H+L GLA  + ++D+ + IIR +         LM                  
Sbjct: 385 LHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLM------------------ 426

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I      Y++E++ R +    + + TG        E+  L  +I +  DIL+  +R
Sbjct: 427 IGFGIDEVQADYVAEIKLRHLNREYILKRTG--------EIEQLEKDIADLNDILAKPAR 478

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTV--SHLGYVKRVPL 553
           +  II  EL  V  +   PRR+ I+  L  +    +  V  D  VTV  +  GY+K++P 
Sbjct: 479 IRRIIINELNDVAKKYAQPRRSEILYDLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPP 538

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              ++ R  G  +    +++ D +        +   LFF+    VYK ++  L  G    
Sbjct: 539 ---QSLRTAGAHK----LKEGDEIIHQVETRNNVEALFFTDKQQVYKVRLNELEDGKVAQ 591

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  L   L +++GE I   M    D S     YV+F    G   +  L+ +       K
Sbjct: 592 MGIYLPGRLGMDEGENILA-MVITGDYSG----YVLFFFAGGKCAKIPLASYATKQNRRK 646

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +      ++ +  +    ++ ++ + T  G+ +    + I     R+S GV  ++L K  
Sbjct: 647 LLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDSQGVAVVTLKKNQ 706

Query: 734 QVISM 738
            + S+
Sbjct: 707 TIASV 711


>gi|71031392|ref|XP_765338.1| DNA gyrase subunit A [Theileria parva strain Muguga]
 gi|68352294|gb|EAN33055.1| DNA gyrase subunit A, putative [Theileria parva]
          Length = 1014

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 181/561 (32%), Positives = 305/561 (54%), Gaps = 76/561 (13%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++  D E+E  +  + + D M +S+L YA+++ILGRA+PD RDGLK VHRRI++ M  + 
Sbjct: 89  VLDGDSEKE-SLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLK 147

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           ++ N +Y KCA++ G+V+G YHPH + ++YDAL R++QD+ +++ LI+G GNFGS + DP
Sbjct: 148 LDPNGQYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDP 206

Query: 125 PAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL   +   +L+D+  +T+D+ PN+D +  EP+VL  R PN+L+NG  GIA
Sbjct: 207 PAAMRYTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIA 266

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDN-------------PDIDLDAL-----MEIIR---G 222
           VG+ATNIP HN  EV++  +  I +              D  +D L     +EI+    G
Sbjct: 267 VGLATNIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMG 326

Query: 223 PDFPTGAVI-LGRTGIKNAYATGRGSIVIR-----------------GVSHIEKTSGDRE 264
           PDFPTG VI   R  ++  Y +G+G+++I+                     I+     R 
Sbjct: 327 PDFPTGGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRI 386

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV-- 322
            IV+ +IPY      ++E I   ++   I+ + D++DESDR G R+V+ELKR  S+ +  
Sbjct: 387 SIVINQIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEI 446

Query: 323 --ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             I+ +L R T     +  N + L+  KP RF L  ILK ++ FR +V+ R+ K+LL K 
Sbjct: 447 QEIMAKLQRLTEYN--YKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKL 504

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +    ++    I   N++ ++   +   N +    ++++  +                  
Sbjct: 505 KKNLDIINAYIIIYLNINTIINSFQ---NHQKGVYKVLKEEFK----------------- 544

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L++ Q ++++ L L +L  L  D+++ +      +I+   ++L++ + L   
Sbjct: 545 --------LNDDQMKSVMRLTLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNE 596

Query: 501 IKQELLSVKDELDTPRRTRIV 521
           I  +L  +KD     +R  ++
Sbjct: 597 IISDLTELKDHFKNIKRNTLI 617


>gi|46019120|emb|CAE52024.1| gyrase subunit A [Bacillus licheniformis]
          Length = 212

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 170/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +   + IE+TS
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLPAKAQIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 212


>gi|117654239|gb|ABK55550.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654241|gb|ABK55551.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654243|gb|ABK55552.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654245|gb|ABK55553.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654247|gb|ABK55554.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654249|gb|ABK55555.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654251|gb|ABK55556.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654253|gb|ABK55557.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654293|gb|ABK55577.1| DNA gyrase subunit A [Bacillus sp. 3EC1b2]
          Length = 223

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|320120331|gb|EFE28486.2| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
          Length = 733

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 219/744 (29%), Positives = 381/744 (51%), Gaps = 69/744 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I D ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +  N    K A I G
Sbjct: 22  NIVDTLKQNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYRMNL-LNANRTKSANIVG 79

Query: 80  EVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGDPP-AAERYTECRLQ 136
           + M K +PHG++AIY+ + ++++ + SL    I+ +GNFG S   D   AA RYTE +L 
Sbjct: 80  QTM-KLNPHGDSAIYETMVKLSRGNESLLHPYIDSKGNFGKSTSRDMQFAAPRYTEAKLM 138

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                L  ++ K+TVDF  NYD + +EPV+L   +PN+L+    GIAVGMA++IP+ NL 
Sbjct: 139 PLCKELFGEIEKNTVDFVDNYDSTMKEPVLLPTTFPNILLKANKGIAVGMASSIPSFNLS 198

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           E+ +  +A +   DI+ + + + I GPDFP+G  ++     +K+ Y TGRGS  +RG   
Sbjct: 199 EICNYTIAYLK--DINCN-MFDFILGPDFPSGGELLFDEEEMKSIYETGRGSFKLRGKYR 255

Query: 256 IEKTSGDREQIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             K    +EQ++ + EIPY      ++EKI +L+++  + +I D+RDE+D  G ++ I++
Sbjct: 256 YLK----KEQLIEIYEIPYTTTVEVIIEKIIDLIKDGTLREITDIRDETDLNGLKITIDV 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A  + ++ ++++YT+L+  FS N   L   KP+   +  I+  ++ FR + +VRRT 
Sbjct: 312 RKNADVESMMGKIFKYTTLEDSFSCNFNVLIDNKPKILGIKDIIFHWLNFRRQCIVRRTL 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             +     R  +L GL   + ++D+ + IIR   N E              +I  L +L+
Sbjct: 372 NEMEDKSKRLFLLQGLEKIILDIDKAIAIIR---NTE-------------KEIDVLPNLM 415

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           +             + E Q   ILE++L  L         +E+  L  EI +  +I  S+
Sbjct: 416 N----------AFAIEEKQAEYILEIKLRNLNKEYILKKISEIKELEEEITKLEEIYHSQ 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------REDMVVT--VSHLG 546
                +I  EL  +       R+T IV        +D +V       ED  VT  ++  G
Sbjct: 466 KLQDKLIISELKKIIKTYGQERKTTIVSK------KDVVVYSKENFTEDYAVTMFLTKDG 519

Query: 547 YVKRVP-LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           Y+K++P LS+     +  K    ++ + E   TD+F++ +  +VL        Y+ KV  
Sbjct: 520 YLKKIPELSLRAYSEQKLKDNDSILQQIEMNNTDVFMLLSTNNVL--------YQVKVSD 571

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L        G  L N L + + ERI   M FPE+       Y+V+  ++G V +   S +
Sbjct: 572 LKDTKASLLGLFLPNYLKMEENERIIQ-MIFPEEYEG----YMVYFFENGKVAKINFSSY 626

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              +   K+     ++  ++      ++   ++ T   +C+    S+I     R+S GV+
Sbjct: 627 QTKSFRKKLQNVYSTQSPLVDCFHIKKDETFVIFTDNYRCLSIDTSSIPEKISRSSQGVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYD 749
            I+L K  +V  + ++   D ++D
Sbjct: 687 VINLNKNAKVERIELLESDDREWD 710


>gi|117654301|gb|ABK55581.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I    DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGXTDLRDESDRNGMRIVI 223


>gi|117654345|gb|ABK55603.1| DNA gyrase subunit A [Bacillus halodurans]
          Length = 222

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 176/223 (78%), Gaps = 1/223 (0%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+ K +  L+ D+ KD
Sbjct: 1   DSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEARMSKISMELVRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPHQLGEVIDGVLALSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI +R  + IE+  G +++I+V 
Sbjct: 121 DISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAKTEIEEHHG-KQRIIVH 179

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 180 EIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVI 222


>gi|117654255|gb|ABK55558.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654257|gb|ABK55559.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654259|gb|ABK55560.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654261|gb|ABK55561.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654263|gb|ABK55562.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 223

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654315|gb|ABK55588.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 173/223 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEXTSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LV +K+I  I DLRDES+R G  +V 
Sbjct: 181 EIPYQVNKAXLIEKIADLVPDKKIDGITDLRDESNRNGMPIVF 223


>gi|289672551|ref|ZP_06493441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 345

 Score =  286 bits (733), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 152/342 (44%), Positives = 225/342 (65%), Gaps = 14/342 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKP 349
           + + R      D ++  L+  T L+S +  ++N++ L+G KP
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KP 345


>gi|117654305|gb|ABK55583.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 175/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+G + AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGXRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LV +K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVXDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654319|gb|ABK55590.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 223

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 175/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVP 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|313192093|emb|CBX19906.1| gyrase A [Clostridium perfringens]
          Length = 231

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/232 (58%), Positives = 180/232 (77%), Gaps = 1/232 (0%)

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVN
Sbjct: 1   GSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVN 60

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI
Sbjct: 61  GSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGI 120

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TG+G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+
Sbjct: 121 RAAYETGKGRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGIS 179

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P
Sbjct: 180 DLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQP 231


>gi|46019124|emb|CAE52026.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++
Sbjct: 61  EILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 121 GVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|313115470|ref|ZP_07800935.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622180|gb|EFQ05670.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 749

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 222/728 (30%), Positives = 357/728 (49%), Gaps = 60/728 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A I G 
Sbjct: 34  ITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSANIVGS 91

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYTE +L+ 
Sbjct: 92  TM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLEG 150

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA NI + NL E
Sbjct: 151 VCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAE 210

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           +    VA++ +   D+   M     PDF  G  IL     ++  Y  GRGS+ +R    +
Sbjct: 211 LCATTVALMKDEHHDISTTMP---APDFVGGGQILYDEAQMREIYENGRGSVKVRARYSV 267

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
               G+   I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  G ++ ++LKR
Sbjct: 268 --VPGE-NMIEVTQIPPTTTVEAIMDKIAELVKAGKVKEISDMRDETDLNGLKLTLDLKR 324

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR E V RRT Y 
Sbjct: 325 GVDADKLMAKLFKATPLEDSFSANFNILVSGQPRVMGVREILKEWTAFRVECVRRRTYYD 384

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+    R H+L GLA  + ++D+ ++IIR +         LM                  
Sbjct: 385 LHGKEKRLHLLKGLAAILLDIDKAIKIIRTTEEETEVVPNLM------------------ 426

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI---RNELNSLGIEIKECLDILSS 493
               IG      + EVQ   + E++L     L R+ I    +E+  L  +I +  DIL+ 
Sbjct: 427 ----IG----FGIDEVQADYVAEIKLRH---LNREYILKRTSEIEQLEKDIADLNDILAK 475

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTV--SHLGYVKR 550
            +R+  II  EL  V  +   PRR+ I+  L  D    +     D  VTV  +  GY K+
Sbjct: 476 PARIRRIIINELNDVAKKYGQPRRSEILYDLPEDENGSEEEEAPDYPVTVFFTREGYFKK 535

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P    +  R  G  +    +++ D +        +   LFF+    VYK ++  L  G 
Sbjct: 536 IP---PQGLRTAGAHK----LKEGDEIVQQIETRNNVEALFFTDKQQVYKVRLAELEDGK 588

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G  +   L +++GE + + M    D S     +++F    G   +  LS +     
Sbjct: 589 VAQMGIFIPGRLGMDEGENVLS-MVITSDYSG----FMLFFFASGKCAKIPLSSYATKQN 643

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             K+      ++ +  +    +E ++ + T   + +    + I   A R+S GV  ++L 
Sbjct: 644 RRKLLKAYCDKEPLAKLFFLPEETELAIRTSASRMLLVGTAQIAAKATRDSQGVAVVTLK 703

Query: 731 KGDQVISM 738
           K   + S+
Sbjct: 704 KNQTIASV 711


>gi|46019108|emb|CAE52018.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++
Sbjct: 61  EILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 121 GVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|213864968|ref|ZP_03387087.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 295

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/290 (51%), Positives = 197/290 (67%), Gaps = 9/290 (3%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG 
Sbjct: 1   TNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 60

Query: 248 IVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           + IR  + +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ 
Sbjct: 61  VYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKD 120

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R 
Sbjct: 121 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRR 180

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  +
Sbjct: 181 EVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGN 240

Query: 427 IKDLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGL 468
           +  +++   D +          G  DG  YL+E Q +AIL+LRL +LTGL
Sbjct: 241 VAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGL 290


>gi|254993570|ref|ZP_05275760.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 281

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/275 (49%), Positives = 192/275 (69%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R 
Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
            + IE   G R+QI + EIPY+VNKA +++++ EL
Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDEL 279


>gi|61844861|emb|CAG44506.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844863|emb|CAG44507.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070001]
 gi|61844867|emb|CAG44508.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844869|emb|CAG44509.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844873|emb|CAG44510.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070002]
 gi|61844875|emb|CAG44511.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070003]
 gi|61844877|emb|CAG44512.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070005]
 gi|61844881|emb|CAG44513.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 19980863]
 gi|61844883|emb|CAG44514.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070007]
          Length = 257

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/257 (54%), Positives = 178/257 (69%), Gaps = 5/257 (1%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE R
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HN
Sbjct: 61  LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHN 120

Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G  +AY TGRGSI +
Sbjct: 121 LRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRM 180

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R
Sbjct: 181 RGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLR 240

Query: 310 VVIELKRGASADVILNQ 326
           +VIE+KR A A V++N 
Sbjct: 241 IVIEIKRDAVAKVVINN 257


>gi|255030145|ref|ZP_05302096.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 519

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 303/568 (53%), Gaps = 86/568 (15%)

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL
Sbjct: 1   TALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEGL 60

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            IA+ N+D ++++IR S   + A+  LM + +N                         LS
Sbjct: 61  RIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN-------------------------LS 94

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q +AIL++RL RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K 
Sbjct: 95  DKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKV 154

Query: 511 ELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           +    RRT I+ G L+ +EDED I  E++ +T++  GY+KR+PLS YR+QRRGG+G  G+
Sbjct: 155 KYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGM 214

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
              ++DFV  L   STH ++LFF++ G VY+ K + +P     A+G  +IN+L +   E+
Sbjct: 215 STHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQ 274

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           +  ++   E     ++ Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+ 
Sbjct: 275 VNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQM 331

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                ++++ TK GQ + FP   IRV  GR + GVRGI L + D+VI M +         
Sbjct: 332 TDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIRLREDDEVIGMEV--------- 381

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                    L++D  V                   L V+EKG+G
Sbjct: 382 -------------------------LEDDEKV-------------------LVVTEKGYG 397

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+T +  + + NR G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ 
Sbjct: 398 KQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDT 455

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERI 897
           +    R+  GV +    +DE+V +V ++
Sbjct: 456 VSQTGRSAMGVKLIRLDEDEKVATVAKV 483


>gi|313192115|emb|CBX19917.1| gyrase A [Clostridium perfringens]
          Length = 242

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/240 (55%), Positives = 183/240 (76%), Gaps = 1/240 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 4   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 63

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 64  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 123

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 124 VVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 182

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 183 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 242


>gi|295104659|emb|CBL02203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 749

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 213/725 (29%), Positives = 354/725 (48%), Gaps = 54/725 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A I G 
Sbjct: 34  ITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSANIVGS 91

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYTE +L+ 
Sbjct: 92  TM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLES 150

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA NI + NL E
Sbjct: 151 VCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAE 210

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +    VA++ +   D+   M     PDF  G  ++     ++  Y  GRGS+ +R  +  
Sbjct: 211 LCATTVALMKDEHHDIGTTMP---APDFVGGGQIVYDEAQMREIYENGRGSVKVR--ARY 265

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
               G+   I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  G ++ ++LKR
Sbjct: 266 NAVPGE-NMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLNGLKLTLDLKR 324

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR E V RRT Y 
Sbjct: 325 GVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILKEWTAFRVECVRRRTYYD 384

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+    R H+L GLA  + ++D+ +RIIR +         LM                  
Sbjct: 385 LHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLM------------------ 426

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I      Y++E++ R +    + + TG        E+  L  +I +  D+L+  +R
Sbjct: 427 IGFGIDEVQADYVAEIKLRHLNREYILKRTG--------EIEQLEKDIADLNDVLAKPAR 478

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-EDMVVTV--SHLGYVKRVPL 553
           +  II  EL  V  +   PR + I+  L + +         D  VTV  +  GY K++P 
Sbjct: 479 IRRIIINELNDVAKKYGKPRCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPP 538

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              ++ R  G  +    +++ D +        +   LFF+    VYK ++  L  G    
Sbjct: 539 ---QSLRTAGAHK----LKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELEDGKVAQ 591

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  +   L +++GE + + M    D S     +++F    G   +  LS +       K
Sbjct: 592 MGIFIPGRLGMDEGENVLS-MVITGDYSG----FMLFFFASGKCAKIPLSSYATKQNRRK 646

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +      ++ +  +    +E ++ + T   + +    + I     R+S GV  ++L K  
Sbjct: 647 LLKAYSDKEPLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQ 706

Query: 734 QVISM 738
            + S+
Sbjct: 707 TIASV 711


>gi|319826938|gb|ADV74763.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 222

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 175/221 (79%)

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  +A RYTE R+ K +  +L D+ KDT+D++ NY+GS +EP V+ +R+PN+LVNG  G
Sbjct: 2   GDSSSAMRYTEARMSKISMEILRDITKDTIDYQDNYEGSEREPGVMPSRFPNLLVNGAAG 61

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY
Sbjct: 62  IAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAY 121

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRD
Sbjct: 122 ESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRD 181

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           ESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F ++++
Sbjct: 182 ESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIHLL 222


>gi|160943135|ref|ZP_02090372.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445604|gb|EDP22607.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
          Length = 749

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 213/725 (29%), Positives = 354/725 (48%), Gaps = 54/725 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A I G 
Sbjct: 34  ITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGAR-TKSANIVGS 91

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQK 137
            M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYTE +L+ 
Sbjct: 92  TM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLES 150

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA NI + NL E
Sbjct: 151 VCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAE 210

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +    VA++ +   D+   M     PDF  G  ++     ++  Y  GRGS+ +R  +  
Sbjct: 211 LCATTVALMKDEHHDIGTTMP---APDFVGGGQIVYDEAQMREIYENGRGSVKVR--ARY 265

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
               G+   I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  G ++ ++LKR
Sbjct: 266 NAVPGE-NMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLNGLKLTLDLKR 324

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR E V RRT Y 
Sbjct: 325 GVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILKEWTAFRIECVRRRTYYD 384

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+    R H+L GLA  + ++D+ +RIIR +         LM                  
Sbjct: 385 LHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLM------------------ 426

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I      Y++E++ R +    + + TG        E+  L  +I +  D+L+  +R
Sbjct: 427 IGFGIDEVQADYVAEIKLRHLNREYILKRTG--------EIEQLEKDIADLNDVLAKPAR 478

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-EDMVVTV--SHLGYVKRVPL 553
           +  II  EL  V  +   PR + I+  L + +         D  VTV  +  GY K++P 
Sbjct: 479 IRRIIINELNDVAKKYGKPRCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGYFKKIPP 538

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              ++ R  G  +    +++ D +        +   LFF+    VYK ++  L  G    
Sbjct: 539 ---QSLRTAGAHK----LKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELEDGKVAQ 591

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G  +   L +++GE + + M    D S     +++F    G   +  LS +       K
Sbjct: 592 MGIFIPGRLGMDEGENVLS-MVITGDYSG----FMLFFFASGKCAKIPLSSYATKQNRRK 646

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +      ++ +  +    +E ++ + T   + +    + I     R+S GV  ++L K  
Sbjct: 647 LLKAYSDKEPLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQ 706

Query: 734 QVISM 738
            + S+
Sbjct: 707 TIASV 711


>gi|1296993|emb|CAA64978.1| DNA gyrase subunit A [Rhizobium phaseoli]
          Length = 148

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/148 (81%), Positives = 137/148 (92%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WS
Sbjct: 1   RDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPV
Sbjct: 61  LRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           V+ A++PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VVPAKFPNLLVNGAGGIAVGMATNIPPH 148


>gi|120406840|ref|YP_956669.1| DNA gyrase/topoisomerase IV subunit A [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959658|gb|ABM16663.1| DNA topoisomerase IV subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 714

 Score =  277 bits (708), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 174/503 (34%), Positives = 266/503 (52%), Gaps = 38/503 (7%)

Query: 22  TDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
            D+  N Y LT+A+  +  RAIP   DGLKP  RR+L+ M    +    K  K ++I   
Sbjct: 20  ADDYWNQYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKICSA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V G  HPHG A++Y A A MA ++  R+ +I+GQG F  + GD PAA+RYTE RL     
Sbjct: 80  VTGNLHPHGGASMYGAAALMAAEFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGA 138

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L  +L    V   P +DG + EP  L AR+P +L NG  GIA G AT +P HN  EV+ 
Sbjct: 139 ALTAELDNHAVPMVPTFDGEWTEPTWLPARWPVLLCNGAVGIAEGWATKVPAHNPREVMA 198

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C A++  P++  D L+++I GPD+  GA ++G TG++    TGRG   +RG   +    
Sbjct: 199 ACRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFTVRGTVSV---- 254

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGAS 319
            D +  +VTE+P  V    + ++I  LV    +  +AD+ D +DR+ G R+V+  KRG S
Sbjct: 255 -DGKNCIVTELPPGVASNTVQDRIRALVESGELSGVADMSDLTDRRNGLRIVVTAKRGHS 313

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           A+ I  QL   T L+S F+ ++VAL+  + P  +++  ++ AF+  R+ VVVRR++Y L 
Sbjct: 314 AEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELISAFLHLRDSVVVRRSEYRLE 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H++ GL     ++D  V +IR S   + AR+ L +R                  
Sbjct: 374 KVTARRHLVAGLMTIHLDIDAAVAVIRGSETVDEARQGLQER------------------ 415

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + I ++   Y        +L L+L RLT L   +++ E   L  E  E  +++++     
Sbjct: 416 FGIDAEQADY--------VLALQLRRLTKLDVIELQAEAEKLDAEFAELTELVANPDARR 467

Query: 499 GIIKQELLSVKDELDTP---RRT 518
            +I +EL+        P   RRT
Sbjct: 468 KVIDEELVETAKLFKGPEFDRRT 490


>gi|47419998|gb|AAT27351.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 188/584 (32%), Positives = 303/584 (51%), Gaps = 121/584 (20%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 274

Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           KA++N+++L   E+I  I+P  + DES      + F TK+G V+R  LS++  I   G  
Sbjct: 275 KAVVNLINLQADEKIMAIIPTTDFDESK----SLCFFTKNGIVKRTNLSEYQNIRSVGVR 330

Query: 675 AMKLDSRDEILS-----------VETCTQEN-------------------DILLTTKLGQ 704
           A+ LD  DE+++           VE    +N                    +   TK G 
Sbjct: 331 AINLDENDELVTAIIVQRDENEEVELLDDDNFNDENINPDENAIESVKGKMLFAVTKKGM 390

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           C++FP++ +R   GR S GV  I   + +  +  A+V+  D                   
Sbjct: 391 CIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND------------------- 430

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                           EQ IL++S KG GKRT++ ++R+ +R G
Sbjct: 431 --------------------------------EQEILSISAKGIGKRTNAGEYRLQSRGG 458

Query: 825 KGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG+   + TD +K      L++V  V+++  ++ ++  G +IRV
Sbjct: 459 KGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRV 497



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 195 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 251

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   DE+++++
Sbjct: 252 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAI 292


>gi|47419994|gb|AAT27349.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 188/582 (32%), Positives = 301/582 (51%), Gaps = 125/582 (21%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT 
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S 
Sbjct: 107 ------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSE 154

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP  
Sbjct: 155 TLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSK 214

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+
Sbjct: 215 QYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274

Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           GKA++N+++L   E+I  I+P   F E++S      + F TK+G V+R  LS++  I   
Sbjct: 275 GKAVVNLINLQADEKIMAIIPTTDFDENKS------LCFFTKNGIVKRTNLSEYQNIRSV 328

Query: 672 GKIAMKLDSRDEILSV----------------------ETCTQENDI--------LLTTK 701
           G  A+ LD  DE+++                        T + EN I           TK
Sbjct: 329 GVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTK 388

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G C++FP++ +R   GR S GV  I   + +  +  A+V+  D                
Sbjct: 389 KGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND---------------- 431

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                              EQ IL++S KG GKRT++ ++R+ +
Sbjct: 432 -----------------------------------EQEILSISAKGIGKRTNAGEYRLQS 456

Query: 822 RSGKGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           R GKG+   + TD +K      L++V  V+++  ++ ++  G
Sbjct: 457 RGGKGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSG 493



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 196 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 252

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   DE+++++
Sbjct: 253 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAI 293


>gi|313192109|emb|CBX19914.1| gyrase A [Clostridium perfringens]
          Length = 228

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/225 (57%), Positives = 175/225 (77%), Gaps = 1/225 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 3   AAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 62

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 63  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 122

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 123 GRIVVRAKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 181

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+
Sbjct: 182 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQ 226


>gi|28916604|gb|AAO59535.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 170/216 (78%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMAT
Sbjct: 2   RYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMAT 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI
Sbjct: 62  NIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSI 121

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G 
Sbjct: 122 PIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGM 181

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 182 RIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|289808119|ref|ZP_06538748.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 346

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/334 (45%), Positives = 215/334 (64%), Gaps = 9/334 (2%)

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELV 288
           +I GR GI+ AY TGRG + IR  + +E  +   RE I+V EIPYQVNKA ++EKIAELV
Sbjct: 13  IINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELV 72

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           ++KR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +
Sbjct: 73  KDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQ 132

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P
Sbjct: 133 PKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAP 192

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAILEL 460
            P  A+  L+ R W+  ++  +++   D +          G  DG  YL+E Q +AIL+L
Sbjct: 193 TPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDL 252

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +LTGL  + + +E   L  +I E L IL S  RL+ +I++E+  ++D+    RRT I
Sbjct: 253 RLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEI 312

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
                D+  ED I +E++VVT+SH GYVK  PL+
Sbjct: 313 TANSADINIEDLISQENVVVTLSHQGYVKYQPLT 346


>gi|47419990|gb|AAT27347.1| DNA gyrase A [Campylobacter coli]
          Length = 500

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 192/589 (32%), Positives = 304/589 (51%), Gaps = 126/589 (21%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RR
Sbjct: 2   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRR 61

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +            
Sbjct: 62  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------ 109

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL 
Sbjct: 110 --------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILK 155

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP
Sbjct: 156 SETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVP 215

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y  Q+RGGKG+  V   D+DF+   F  +TH + L F  +   +  KV+++P GS  
Sbjct: 216 SKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT-LMFVLIEDSFMVKVYKIPEGSRT 274

Query: 613 ARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           A+GKA++N+++L   E+I  I+P   F E++S      + F TK+G V+R  LS++  I 
Sbjct: 275 AKGKAVVNLINLQADEKIMAIIPTTDFDENKS------LCFFTKNGIVKRTNLSEYQNIR 328

Query: 670 RSGKIAMKLDSRDEILSV----------------------ETCTQENDI--------LLT 699
             G  A+ LD  DE+++                        T + EN I           
Sbjct: 329 SVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAV 388

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           TK G C++FP++ +R   GR S GV  I   + +  +  A+V+  D              
Sbjct: 389 TKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND-------------- 433

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                EQ IL++S KG GKRT++ ++R+
Sbjct: 434 -------------------------------------EQEILSISAKGIGKRTNAGEYRL 456

Query: 820 SNRSGKGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            +R GKG+   + TD +K      L++V  V+++  ++ ++  G +IRV
Sbjct: 457 QSRGGKGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRV 500


>gi|68248472|gb|AAY88730.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 228

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/231 (56%), Positives = 170/231 (73%), Gaps = 4/231 (1%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+I S D +    I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  
Sbjct: 2   ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DG
Sbjct: 58  DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GI
Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           AVGMATNIP H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G
Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYG 228


>gi|47419988|gb|AAT27346.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 189/586 (32%), Positives = 303/586 (51%), Gaps = 125/586 (21%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  +K + D  R T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIKSKFDVLRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 274

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L   E+I  I+P   F E++S      + F TK+G V+R  LS++  I   G
Sbjct: 275 KAVVNLINLQADEKIMAIIPTTDFDENKS------LCFFTKNGIVKRTNLSEYQNIRSVG 328

Query: 673 KIAMKLDSRDEILSV----------------------ETCTQENDI--------LLTTKL 702
             A+ LD  DE+++                        T + EN I           TK 
Sbjct: 329 VKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKK 388

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G C++FP++ +R   GR S GV  I   + +  +  A+V+  D                 
Sbjct: 389 GMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND----------------- 430

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                             EQ IL++S KG GKRT++ ++R+ +R
Sbjct: 431 ----------------------------------EQEILSISAKGIGKRTNAGEYRLQSR 456

Query: 823 SGKGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            GKG+   + TD +K      L++V  V+++  ++ ++  G +IRV
Sbjct: 457 GGKGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRV 497



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 195 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 251

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +I   SR  KG   V + +   DE+++++
Sbjct: 252 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAI 292


>gi|108802303|ref|YP_642500.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119871456|ref|YP_941408.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
 gi|108772722|gb|ABG11444.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119697545|gb|ABL94618.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
          Length = 711

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/512 (34%), Positives = 269/512 (52%), Gaps = 43/512 (8%)

Query: 23  DEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           D+  N Y LT+A+  +  RAIP   DGLKP  RR+L+ M    +    K  K +++   V
Sbjct: 18  DDYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAV 77

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL      
Sbjct: 78  TGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAA 136

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           L  +L    V     +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+  
Sbjct: 137 LTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAA 196

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           C A++  P++  D L+++I GPD+  GA ++G TG++    TGRG   +RG   +     
Sbjct: 197 CRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFTVRGTVTV----- 251

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGASA 320
           D +  VVTE+P  V    + E+I  LV    +  +AD+ D +DR+ G R+V+  KRG SA
Sbjct: 252 DGKNCVVTELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHSA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           + I  QL   T L+S F+ ++VAL+  + P  +++  ++ AF++ R++VV+ R++Y L K
Sbjct: 312 EQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEK 371

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H++ GL +   ++D  V +IR S   + AR+ L  R                   
Sbjct: 372 VTARRHLVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDR------------------- 412

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +  VQ   +L L+L RLT L   +++ E   L  E  E  +++S+      
Sbjct: 413 -------FAIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAELTELVSNPDARRV 465

Query: 500 IIKQELLSVKDELDTP---RRTRIVEGLLDME 528
           +I +EL+        P   RRT     +LD E
Sbjct: 466 VIDKELVETAKLFKGPEFDRRT-----VLDFE 492


>gi|317471525|ref|ZP_07930876.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|316901020|gb|EFV22983.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 651

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 194/631 (30%), Positives = 324/631 (51%), Gaps = 40/631 (6%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+ VDF  N+D + +EP VL  R PN+L+NG  GIAVGM T+IP HNLGEVVD  +A ++
Sbjct: 36  KNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMIAYLE 95

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--KTSGDREQ 265
           +  +  + L+  I+GPDFPTG +++ +  IK  Y  G G + +RG    E  K  G++++
Sbjct: 96  DESVANEDLLTYIQGPDFPTGGLVVNKKDIKTIYTEGSGKLKLRGKVVFEPGKKRGEKDK 155

Query: 266 IVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +V+TEIPY +   N    L  +  LV  K+  DIAD+ +ES ++G R+V+ELK+G   + 
Sbjct: 156 LVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELKKGTDIER 215

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           + N LY+ T L+  F VNM+A+   +PE  +L  I+     F   +V R+ + LL+K  D
Sbjct: 216 LKNLLYKKTKLEDTFGVNMLAIVDGRPETLSLRDIIAHHTEFHYGLVKRKYQTLLSKLYD 275

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           +  V  GL  A   +D ++ I+R S N + A+  L +        K        SS ++ 
Sbjct: 276 QREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVGNIRFK--------SSESMI 327

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
               +  +E Q  AIL+LRL +L GL    +R E   +  +I E  DIL + + +  ++K
Sbjct: 328 EACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVAKIAEYEDILHNPASMQRVMK 387

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           Q+L+ +K E    RRT + +G   + +E+ +  E +   +   GY K    + Y+  +  
Sbjct: 388 QDLMKIKKEYQRERRTVVEDGAEAVFEEEPLKEEQVYFVMDRFGYAKTFDKATYQRNQEN 447

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                    RD  ++           +  F+  G +++ KV  +P G  + +G  + N+ 
Sbjct: 448 AS-------RDYKYIVPCM---NTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLG 497

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           + +  +    I     +  + ++L+  FAT+ G ++    ++F Q+ +    A KL   D
Sbjct: 498 NYDSSDE-AIIAVLAAEAMTHDSLF--FATEQGMLKIVSGTEF-QVTKRTVSATKLSDGD 553

Query: 683 EILSVETCTQEND------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +LSV+    E        ++L TK G  +RF +  +     + +VGVRGI L K D ++
Sbjct: 554 ALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPE-KKKGAVGVRGIKLNK-DDIL 611

Query: 737 SMAIVLHADA----DYD-ERICYMKHMSAQR 762
               ++ AD     DY  +R+ + K   A+R
Sbjct: 612 LHTYLMEADGITSMDYKGKRLDFNKLKLAKR 642


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 217/762 (28%), Positives = 374/762 (49%), Gaps = 75/762 (9%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            ++I   D E+EK I  V     +  +YL YAI VI  RAI  + DG KP HR++L+ + +
Sbjct: 659  DYIEHFDNEQEKDIVKV-----LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHE 712

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              + +NK+  K A I G  M   + HG+ +IY+ L RMAQ  +L    + G+GNFG    
Sbjct: 713  SNL-YNKR-TKSAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTS 769

Query: 123  DP--PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                 A  RYTE             + K+ VDF PN+DG  +EP++L   +PNVLVN   
Sbjct: 770  KSLQNAHMRYTEAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANK 829

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GIAVGMA+  P+ NL EV D  +A I + +I    + + +  PDF TG  I+      N 
Sbjct: 830  GIAVGMASATPSFNLKEVCDLTIAYIKDTNI---VVSDYLLCPDFATGGFIVRDVDKLNQ 886

Query: 241  -YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR---IVDI 296
             Y TG+GS+ +R    ++       +I+VTEIPY  N+ ++++ I  L RE +   I +I
Sbjct: 887  IYETGQGSVTLRAKYEVKDN-----EIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNI 941

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTL 354
             ++ D +DR+G  + I++K+  + ++++ +LY  T LQ  +S+NM  V L+   P   ++
Sbjct: 942  TNVIDSTDRKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKI-PRVLSI 1000

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              IL  ++ FR   + R + Y       + H+L    I + ++D +V I R         
Sbjct: 1001 KRILDEWLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITR--------- 1051

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                    NA D  D+I  +    + I  +   Y+S ++ + + +  +  +T        
Sbjct: 1052 --------NAIDDDDMIKQL-QLYFKIDQEQAEYVSNIKLKKLNKNNIIEIT-------E 1095

Query: 475  NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
             ++ +L  EI +  +I +  +R+  II Q+L +++D+   PR+T I+    ++ED   + 
Sbjct: 1096 QQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEII----NVEDIPSVT 1151

Query: 535  REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR---SGVVMRDEDFVTDLFIVSTHTSVLF 591
             ED+ +   +       P  V   Q+   K R       ++D+D +      +    +L 
Sbjct: 1152 LEDIKIEDFN-------PTLVLTEQQYIKKNRVFSQSQKLKDDDKILQFHQCNNKDDLLL 1204

Query: 592  FSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVV 649
            F++ G V   KV+ L    P   G  L N+L   L   E++  I      + S     V+
Sbjct: 1205 FTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNYKGS-----VI 1259

Query: 650  FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRF 708
               ++GNV R  L  + +  ++ ++ M   + D +++S+   T + +ILL ++ G+ +  
Sbjct: 1260 TVFENGNVARIDLKQY-KTKQNRQVPMDAYNTDSKLVSISVITDDTNILLVSQEGKALII 1318

Query: 709  PISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYD 749
              S IR    RN+ GV G+ +  + ++VI   I +  + ++D
Sbjct: 1319 NTSQIRPTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFD 1360


>gi|32261029|emb|CAD99012.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 126/213 (59%), Positives = 163/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+AA+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|115380010|ref|ZP_01467060.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
 gi|115362989|gb|EAU62174.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 193/598 (32%), Positives = 305/598 (51%), Gaps = 52/598 (8%)

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
             EP+V+ +R P +L+NG  GIAVGMATNIP H+LGE+ D   A+I+N ++ +  LM+ +
Sbjct: 1   LSEPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELCDALAALIENGNLAVKDLMKFV 60

Query: 221 RGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           +GPDFPTG  IL  +  ++  Y TG+GS+ IRG   +E      +QI++T IPY VNK+ 
Sbjct: 61  KGPDFPTGGQILNSKAELREIYETGQGSVRIRGEYALEDVKKGGQQIIITSIPYTVNKST 120

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++ KI +LVRE+++  + D+RDES ++  R+V+E KR AS ++++  LY++T LQ+ F V
Sbjct: 121 LVSKIGDLVRERKLPLLLDVRDESTKE-VRIVLEFKRDASPELVMAYLYKHTPLQTNFGV 179

Query: 340 NMVALNGY------KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           N+  L          P+R  L  IL+ F+ FR EVV +R ++ L + + R H+L G    
Sbjct: 180 NLTCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKV 239

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
              LDE++RIIR S   + A ++LM R                            L EVQ
Sbjct: 240 YDALDEMIRIIRASEGKQDAAKKLMAR--------------------------FKLDEVQ 273

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             AILE++L +L  L    I+ EL    +E+K    IL  + +L G +K EL  +K   +
Sbjct: 274 VDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKATYN 333

Query: 514 TPRRTRIVEG---LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
             RRTRI       ++  ++  IV ED  V ++  G++KRV         R  K  S   
Sbjct: 334 DKRRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRV---------REVKDPSTTR 384

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           +R+ D V  +   S  ++++ FS+ G  Y  +   +P  +    G  +  +   + GERI
Sbjct: 385 LREGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPAST--GYGDPVQKLFKFDDGERI 442

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVET 689
              +    D        +V  TK G   R  L   ++++ RSG+   K    DEI+ V+ 
Sbjct: 443 VGALSL--DSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQP 500

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
             +++ + + T+         + +   AG    GV  I +  GD+V+    V     D
Sbjct: 501 VGEKDLLAVLTERTYATVCRAAEVNELAGPGK-GVLVIKVEPGDRVMEFLAVAPGQKD 557


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 219/762 (28%), Positives = 374/762 (49%), Gaps = 75/762 (9%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            ++I   D E+EK I  V     +  +YL YAI VI  RAI  + DG KP HR++L+ + +
Sbjct: 659  DYIEHFDNEQEKDIVKV-----LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHE 712

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              + +NK+  K A I G  M   + HG+ +IY+ L RMAQ  +L    + G+GNFG    
Sbjct: 713  SNL-YNKR-TKSAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTS 769

Query: 123  DP--PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                 A  RYTE             + K+ VDF PN+DG  +EP++L   +PNVLVN   
Sbjct: 770  KSLQNAHMRYTEAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANK 829

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GIAVGMA+  P+ NL EV D  +A I + +I    + + +  PDF TG  I+      N 
Sbjct: 830  GIAVGMASATPSFNLKEVCDLTIAYIKDTNI---VVSDYLLCPDFATGGFIVRDVDKLNQ 886

Query: 241  -YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR---IVDI 296
             Y TG+GS+ +R      K      +I+VTEIPY  N+ ++++ I  L RE +   I +I
Sbjct: 887  IYETGQGSVTLRA-----KYGVKDNEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNI 941

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTL 354
             ++ D +DR+G  + I++K+  + ++++ +LY  T LQ  +S+NM  V L+   P   ++
Sbjct: 942  TNVIDSTDRKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKI-PRVLSI 1000

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              IL  ++ FR   + R + Y       + H+L    I + ++D +V I R         
Sbjct: 1001 KRILDEWLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITR--------- 1051

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                    NA D  D+I  +    + I  +   Y+S ++ + + +  +  +T        
Sbjct: 1052 --------NAIDDDDMIKQL-QLYFKIDQEQAEYVSNIKLKKLNKNNIIEIT-------E 1095

Query: 475  NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
             ++ +L  EI +  +I +  +R+  II Q+L +++D+   PR+T I+    ++ED   + 
Sbjct: 1096 QQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEII----NVEDIPSVT 1151

Query: 535  REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR---SGVVMRDEDFVTDLFIVSTHTSVLF 591
             ED+ +   +       P  V   Q+   K R       ++D+D +      +    +L 
Sbjct: 1152 LEDIKIEDFN-------PTLVLTEQQYIKKNRVFSQSQKLKDDDKILQFHQCNNKDDLLL 1204

Query: 592  FSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVV 649
            F++ G V   KV+ L    P   G  L N+L   L   E +  I    + + S     VV
Sbjct: 1205 FTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEEVIYISTTKDYKGS-----VV 1259

Query: 650  FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRF 708
               ++G + R  L  + +  ++ +I M   + D +I+S++  T + DILL ++ G+ +  
Sbjct: 1260 SVFENGYIARTDLQTY-KPKQNRQIPMSAYNTDSKIVSIQLITNDTDILLVSQEGKSLII 1318

Query: 709  PISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYD 749
              S IR    RN+ GV G+ +  + +++I+  I +  D +++
Sbjct: 1319 NTSQIRPTKSRNTQGVSGMKIDIETNKIIASIIGVTVDDNFN 1360


>gi|3548920|gb|AAC68576.1| DNA gyrase A [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 196

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/195 (64%), Positives = 158/195 (81%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLA 180

Query: 197 EVVDGCVAVIDNPDI 211
           EVV+GC+A ID+ +I
Sbjct: 181 EVVNGCLAYIDDENI 195


>gi|28916602|gb|AAO59534.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 129/216 (59%), Positives = 169/216 (78%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMAT
Sbjct: 2   RYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMAT 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRG I
Sbjct: 62  NIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGFI 121

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G 
Sbjct: 122 TIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGM 181

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 182 RIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|462225|sp|P34030|GYRA_SPICI RecName: Full=DNA gyrase subunit A
 gi|49349|emb|CAA79524.1| DNA gyrase subunit A [Spiroplasma citri]
 gi|745459|prf||2016285D DNA gyrase:SUBUNIT=A
          Length = 227

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 126/213 (59%), Positives = 162/213 (76%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M  + + + K++ K A
Sbjct: 15  IRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R  LI+G GNFGS+DGDPPAA RYTE ++
Sbjct: 75  RIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTEAKM 134

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  ++ D+ K+T  F  NYDGS +EP  L   +PN+LVNG  GIAVGMATNIP HNL
Sbjct: 135 SKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNL 194

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
            EV+DG +AV  NP+I    LM+II+GPDFPTG
Sbjct: 195 NEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227


>gi|32261026|emb|CAD99009.2| DNA gyrase subunit A [Campylobacter jejuni]
 gi|32261027|emb|CAD99010.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  274 bits (700), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 162/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|126438285|ref|YP_001073976.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
 gi|126238085|gb|ABO01486.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
          Length = 711

 Score =  273 bits (699), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 175/512 (34%), Positives = 269/512 (52%), Gaps = 43/512 (8%)

Query: 23  DEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           D+  N Y LT+A+  +  RAIP   DGLKP  RR+L+ M    +    K  K +++   V
Sbjct: 18  DDYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAV 77

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL      
Sbjct: 78  TGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAA 136

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           L  +L    V     +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+  
Sbjct: 137 LTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAA 196

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           C A++  P++  D L+++I GPD+  GA ++G TG++    TGRG   +RG   +     
Sbjct: 197 CRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFTVRGTVTV----- 251

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGASA 320
           D +  V+TE+P  V    + E+I  LV    +  +AD+ D +DR+ G R+V+  KRG +A
Sbjct: 252 DGKNCVITELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHNA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           + I  QL   T L+S F+ ++VAL+  + P  +++  ++ AF++ R++VV+ R++Y L K
Sbjct: 312 EQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEK 371

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H++ GL +   ++D  V +IR S   + AR+ L  R                   
Sbjct: 372 VTARRHLVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDR------------------- 412

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +  VQ   +L L+L RLT L   +++ E   L  E  E  +++S+      
Sbjct: 413 -------FAIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAELTELVSNPDARRV 465

Query: 500 IIKQELLSVKDELDTP---RRTRIVEGLLDME 528
           +I +EL+        P   RRT     +LD E
Sbjct: 466 VIDKELVETAKLFKGPEFDRRT-----VLDFE 492


>gi|145221100|ref|YP_001131778.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
 gi|145213586|gb|ABP42990.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
          Length = 716

 Score =  273 bits (699), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 173/503 (34%), Positives = 263/503 (52%), Gaps = 38/503 (7%)

Query: 22  TDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
            DE  N Y LT+A+  +  RAIP   DGLKP  RR+L+ M +  +    K  K ++I   
Sbjct: 17  ADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQKSSKICSA 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL     
Sbjct: 77  VTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGA 135

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L  +L    V     +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+ 
Sbjct: 136 ALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMA 195

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C A++  P++  D L+++I GPD+  GA ++G  G++    TGRG   +RG   +    
Sbjct: 196 ACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREYITTGRGLFTVRGTVSV---- 251

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGAS 319
            D +  ++TE+P  V    + ++I  LV    +  +AD+ D +DR+ G R+V+  KRG S
Sbjct: 252 -DGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAKRGHS 310

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           A+ I +QL   T L+S F+ ++VAL+  + P  +++  ++ AF++ R+ VV+ R++Y L 
Sbjct: 311 AEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRSEYRLE 370

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H++ GL     ++D  V IIR S   + AR  L +R                  
Sbjct: 371 KVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQER------------------ 412

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +  VQ   +L L+L RLT L   +++ E   L  E     +++S+     
Sbjct: 413 --------FAIDAVQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARR 464

Query: 499 GIIKQELLSVKDELDTP---RRT 518
            +I QEL+        P   RRT
Sbjct: 465 KVIDQELVETAKLFKGPEYDRRT 487


>gi|47419986|gb|AAT27345.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  273 bits (699), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 299/581 (51%), Gaps = 125/581 (21%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++ P GS  A+G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKXPEGSRTAKG 274

Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           KA++N+++L   E+I  I+P   F E++S      + F TK+G V+R  LS++  I   G
Sbjct: 275 KAVVNLINLQADEKIMAIIPTTDFDENKS------LCFFTKNGIVKRTNLSEYQNIRSVG 328

Query: 673 KIAMKLDSRDEILSV----------------------ETCTQENDI--------LLTTKL 702
             A+ LD  DE+++                        T + EN I           TK 
Sbjct: 329 VKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKK 388

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G C++FP++ +R   GR S GV  I   + +  +  A+V+  D                 
Sbjct: 389 GMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND----------------- 430

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                             EQ IL++S KG GKRT++ ++R+ +R
Sbjct: 431 ----------------------------------EQEILSISAKGIGKRTNAGEYRLQSR 456

Query: 823 SGKGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
            GKG+   + TD +K      L++V  V+++  ++ ++  G
Sbjct: 457 GGKGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSG 492



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 195 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 251

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +D+G L  + V +    SR  KG   V + +   DE+++++
Sbjct: 252 TDRGQLYWLKVYKXPEGSRTAKGKAVVNLINLQADEKIMAI 292


>gi|315441935|ref|YP_004074814.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
           subunit alpha [Mycobacterium sp. Spyr1]
 gi|315260238|gb|ADT96979.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Mycobacterium sp. Spyr1]
          Length = 711

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 263/502 (52%), Gaps = 38/502 (7%)

Query: 23  DEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           DE  N Y LT+A+  +  RAIP   DGLKP  RR+L+ M +  +    K  K ++I   V
Sbjct: 18  DEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQKSSKICSAV 77

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL      
Sbjct: 78  TGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAA 136

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           L  +L    V     +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+  
Sbjct: 137 LTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAA 196

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           C A++  P++  D L+++I GPD+  GA ++G  G++    TGRG   +RG   +     
Sbjct: 197 CRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREYITTGRGLFTVRGTVSV----- 251

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGASA 320
           D +  ++TE+P  V    + ++I  LV    +  +AD+ D +DR+ G R+V+  KRG SA
Sbjct: 252 DGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAKRGHSA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           + I +QL   T L+S F+ ++VAL+  + P  +++  ++ AF++ R+ VV+ R++Y L K
Sbjct: 312 EQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRSEYRLEK 371

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H++ GL     ++D  V IIR S   + AR  L +R                   
Sbjct: 372 VTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQER------------------- 412

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +  VQ   +L L+L RLT L   +++ E   L  E     +++S+      
Sbjct: 413 -------FAIDAVQADYVLALQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARRK 465

Query: 500 IIKQELLSVKDELDTP---RRT 518
           +I QEL+        P   RRT
Sbjct: 466 VIDQELVETAKLFKGPEYDRRT 487


>gi|117654317|gb|ABK55589.1| DNA gyrase subunit A [Bacillus sonorensis]
          Length = 204

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 126/204 (61%), Positives = 163/204 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRI 293
           EIPYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKI 204


>gi|32261030|emb|CAD99013.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  273 bits (698), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 162/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|117654329|gb|ABK55595.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 218

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/218 (58%), Positives = 168/218 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVP 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           E+PYQVNKA ++ KIA+LVR+K+   I D RDESD  G
Sbjct: 181 ELPYQVNKARLIXKIADLVRDKKXEGITDXRDESDXNG 218


>gi|118474051|ref|YP_884869.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118175338|gb|ABK76234.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
          Length = 713

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 266/503 (52%), Gaps = 38/503 (7%)

Query: 22  TDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
            D+  N Y LT+A+  +  RAIP   DGLKP  RR+L+ M    +    K  K +++   
Sbjct: 20  ADDYWNHYQLTFALYSVSDRAIPSAYDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSA 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL     
Sbjct: 80  VTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGA 138

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L  +L    V   P +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+ 
Sbjct: 139 ALTAELNDHAVPMVPTFDGEWVEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMA 198

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C A++  P++  D L ++I GPD+ +GA ++G  G++    TGRG   +RG   +E   
Sbjct: 199 ACRALLKTPNMTDDRLCKLIPGPDWGSGASVVGTAGLREYITTGRGHFTVRGTISVEG-- 256

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGAS 319
              +  ++TE+P  V    + ++I  LV    +  +AD+ D +DR+ G R+V+  KRG +
Sbjct: 257 ---KNCIITELPPGVASNTVQDRIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHN 313

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           A+ I +QL   T L+S F+ ++VAL+  + P  +++  ++ AF+  R+ VV+ R++Y L 
Sbjct: 314 AEQIRDQLLALTPLESTFAASLVALDENRVPRWWSVRDLIMAFLQLRDSVVLHRSEYRLE 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R H++ GL     ++D  V +IR S   + AR+ L +R                  
Sbjct: 374 KVTARRHLVAGLMKIHLDIDAAVAVIRGSETVDEARKGLQER------------------ 415

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + I ++   Y        +L L+L RLT L   +++ E   L  E  E  D++++     
Sbjct: 416 FKIDAEQADY--------VLSLQLRRLTKLDVIELQAEAEKLDAEFAELNDLVTNPESRR 467

Query: 499 GIIKQELLSVKDELDTP---RRT 518
            +I +EL+        P   RRT
Sbjct: 468 KVIDKELVETAKLFKGPEYDRRT 490


>gi|209163861|gb|ACI40638.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163865|gb|ACI40640.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163871|gb|ACI40643.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163897|gb|ACI40656.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163899|gb|ACI40657.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163943|gb|ACI40679.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163945|gb|ACI40680.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163947|gb|ACI40681.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163955|gb|ACI40685.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163971|gb|ACI40693.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163973|gb|ACI40694.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/232 (53%), Positives = 178/232 (76%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTV+F PN+DG  +EP VL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM +I+GPDFPTGA I+G++GI+ AY TG+G +++R
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIMGKSGIRAAYETGKGRVIVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE+ + +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR+G R+V
Sbjct: 121 AKSEIEEEN-NRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELK+ A+ +V+LN LY++T +Q  F V M+AL   +P+   +  +L  +++
Sbjct: 180 IELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNEPQVLNIKQVLNYYIS 231


>gi|91093495|gb|ABE11578.1| GyrA [Escherichia coli]
          Length = 211

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 162/203 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALME 218
            EV++GC+A ID+ DI ++ LME
Sbjct: 188 TEVINGCLAYIDDEDISIEGLME 210


>gi|32261028|emb|CAD99011.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/213 (58%), Positives = 161/213 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++D+ D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
 gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
          Length = 655

 Score =  271 bits (692), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 208/633 (32%), Positives = 324/633 (51%), Gaps = 63/633 (9%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA    E +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 15  AAHALYEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 74

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +G
Sbjct: 75  MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 134

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 135 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 189

Query: 305 RQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV--NMVALNGYKPERFTLIGILKA 360
            +    ++ + R      D+++N L+  T L+  F V  NM+ L+  +P+   L+ IL  
Sbjct: 190 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSE 248

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R
Sbjct: 249 WISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR 305

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                      DL D                +Q  AIL+ +L  L  L    IR E + L
Sbjct: 306 ----------FDLTD----------------IQADAILDTKLRHLAKLEEMKIRGEQDEL 339

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDM 538
             E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E +
Sbjct: 340 EKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAI 399

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G+++         Q    K         ++++T     S   +V F  S G  
Sbjct: 400 TVVLSEKGWIRHAKGHNVDCQSLNYKA-------GDNYLTHACGKSNQQAV-FLGSDGRS 451

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  +   LP  S + +G+ +   L++ +G  I  ++   ED+     L++V  +  G   
Sbjct: 452 YSLESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ-----LWLV-GSDAGYGF 503

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVF 716
             K  D +  NRSGK  + L    E+++ +     +ND IL  T  G+ + FPI  +   
Sbjct: 504 VCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQL 563

Query: 717 AGRNSVGVRGISLAKG---DQVISMAIVLHADA 746
           +      +  I  AK    ++V+S  +VL   A
Sbjct: 564 SKGKGNKIINIPAAKAKTREEVLSNLMVLPQGA 596


>gi|32135167|emb|CAD99014.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/213 (58%), Positives = 161/213 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++D+ D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|260748873|gb|ACX48753.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 158/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|311352854|gb|ADP93612.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  270 bits (691), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYI 230


>gi|311353018|gb|ADP93694.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353020|gb|ADP93695.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  270 bits (690), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMAYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYI 230


>gi|209163761|gb|ACI40588.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163763|gb|ACI40589.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163765|gb|ACI40590.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163767|gb|ACI40591.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163769|gb|ACI40592.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163771|gb|ACI40593.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163773|gb|ACI40594.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163775|gb|ACI40595.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163777|gb|ACI40596.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163779|gb|ACI40597.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163781|gb|ACI40598.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163783|gb|ACI40599.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163785|gb|ACI40600.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163787|gb|ACI40601.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163789|gb|ACI40602.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163791|gb|ACI40603.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163793|gb|ACI40604.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163795|gb|ACI40605.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163797|gb|ACI40606.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163799|gb|ACI40607.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163801|gb|ACI40608.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163803|gb|ACI40609.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163805|gb|ACI40610.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163807|gb|ACI40611.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163809|gb|ACI40612.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163811|gb|ACI40613.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163813|gb|ACI40614.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163815|gb|ACI40615.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163817|gb|ACI40616.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163819|gb|ACI40617.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163821|gb|ACI40618.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163823|gb|ACI40619.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163825|gb|ACI40620.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163827|gb|ACI40621.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163829|gb|ACI40622.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163831|gb|ACI40623.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163833|gb|ACI40624.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163835|gb|ACI40625.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163837|gb|ACI40626.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163839|gb|ACI40627.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163841|gb|ACI40628.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163843|gb|ACI40629.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163845|gb|ACI40630.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163847|gb|ACI40631.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163849|gb|ACI40632.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163851|gb|ACI40633.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163853|gb|ACI40634.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163855|gb|ACI40635.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163857|gb|ACI40636.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163859|gb|ACI40637.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163863|gb|ACI40639.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163867|gb|ACI40641.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163869|gb|ACI40642.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163873|gb|ACI40644.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163875|gb|ACI40645.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163877|gb|ACI40646.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163879|gb|ACI40647.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163881|gb|ACI40648.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163883|gb|ACI40649.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163885|gb|ACI40650.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163887|gb|ACI40651.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163889|gb|ACI40652.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163891|gb|ACI40653.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163893|gb|ACI40654.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163895|gb|ACI40655.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163901|gb|ACI40658.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163903|gb|ACI40659.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163905|gb|ACI40660.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163907|gb|ACI40661.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163909|gb|ACI40662.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163911|gb|ACI40663.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163913|gb|ACI40664.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163915|gb|ACI40665.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163917|gb|ACI40666.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163919|gb|ACI40667.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163921|gb|ACI40668.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163923|gb|ACI40669.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163925|gb|ACI40670.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163927|gb|ACI40671.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163929|gb|ACI40672.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163931|gb|ACI40673.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163933|gb|ACI40674.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163935|gb|ACI40675.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163937|gb|ACI40676.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163939|gb|ACI40677.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163941|gb|ACI40678.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163949|gb|ACI40682.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163951|gb|ACI40683.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163953|gb|ACI40684.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163957|gb|ACI40686.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163959|gb|ACI40687.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163961|gb|ACI40688.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163963|gb|ACI40689.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163965|gb|ACI40690.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163967|gb|ACI40691.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163969|gb|ACI40692.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163975|gb|ACI40695.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/232 (53%), Positives = 178/232 (76%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTV+F PN+DG  +EP VL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM +I+GPDFPTGA I+G++GI+ AY TG+G +++R
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIMGKSGIRAAYETGKGRVIVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ + +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEEEN-NRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELK+ A+ +V+LN LY++T +Q  F V M+AL   +P+   +  +L  +++
Sbjct: 180 IELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNEPQVLNIKQVLNYYIS 231


>gi|46204725|ref|ZP_00049578.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/241 (55%), Positives = 168/241 (69%), Gaps = 2/241 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           I   E  EK I  V +  EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+
Sbjct: 10  IDPAEVNEK-IVDVDVQAEMETSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMADMGL 68

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR+ GEVMGK HPHG+AAIYDAL R++QD+SLRL L++G GNFG++D D P
Sbjct: 69  RPDRAHVKSARVVGEVMGKLHPHGDAAIYDALVRLSQDFSLRLPLVDGHGNFGTLD-DGP 127

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   +  +   L +D VDF PNYD   Q+P VL A  PN+LVNG  GIAVG
Sbjct: 128 AASRYTEARLAPPSLAMTAGLDEDVVDFVPNYDNKLQQPEVLPAAIPNLLVNGASGIAVG 187

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNL EVV     ++ +PD DL+ALM  + GPD PTG  I+G  G+++AY TGR
Sbjct: 188 MATNMAPHNLVEVVAAARHLVAHPDADLEALMRFVPGPDLPTGGKIVGLDGVRDAYRTGR 247

Query: 246 G 246
           G
Sbjct: 248 G 248


>gi|144954320|gb|ABP04236.1| gyrase alpha subunit [Yersinia pseudotuberculosis]
          Length = 188

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/188 (65%), Positives = 152/188 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLS 180

Query: 197 EVVDGCVA 204
           EV+DGC+A
Sbjct: 181 EVIDGCLA 188


>gi|317133928|ref|YP_004089839.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
 gi|315450390|gb|ADU23953.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 729

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 221/739 (29%), Positives = 371/739 (50%), Gaps = 64/739 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +++ +  +Y+ YA++VI  RA+P++ DG KP HR++L+ M QM + ++KK  KCA I 
Sbjct: 23  IVVSEVLTENYMPYAMSVIKSRALPEI-DGFKPAHRKLLYTMYQMKL-FDKK-TKCANIV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQD-WSLRLLLIEGQGNFG---SVDGDPPAAERYTECR 134
           G+ M +Y+PHG+++IY+ L R+ +D  SL   LI  +GNFG   S D    AA RYTE  
Sbjct: 80  GQTM-QYNPHGDSSIYETLVRLTEDNESLLTPLISSKGNFGKHYSRDM-AYAAYRYTEAG 137

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
             K A  L + + K+ VD   N+D + +EPV+L   +PN+L     GIAVGMA+NI + N
Sbjct: 138 FTKIAAELFEGINKNAVDMADNFDATKKEPVLLPTSFPNILAMPTLGIAVGMASNIASFN 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           L E+ +  +  I +P  D   +++I+ GPDF TG  ++  R  +   Y TG+GSIV+R  
Sbjct: 198 LKELCEATIEYIKDPKTD---ILDIMPGPDFSTGGDILFDRDEMDKIYRTGKGSIVVRSK 254

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             ++K +    +I + EIPY     A++E +  L + KRI+DI D+RD++D+ G  + IE
Sbjct: 255 YTVDKKN---RRIEIREIPYSTTTEAIIENVISLCKSKRIMDIDDIRDDTDKNGLLITIE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  D I+N+LY  T LQ  FS N   L    P    + GIL  ++ FR E + R  
Sbjct: 312 YKRSADPDEIMNKLYSLTPLQDTFSCNFTMLINNNPVVLGVYGILDEWIKFRTECIKREL 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L   R + H++ GL   + N+D+ ++IIR +   +     LM+              
Sbjct: 372 TYDLEIFRKKLHLMEGLQKILLNIDKAIKIIRGTKLDKDVIPNLMK-------------- 417

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                   G D    + + Q   I E+RL  +      D   E+  +  +IK+   I+SS
Sbjct: 418 --------GFD----IDKTQAEYITEIRLRNINEEWILDRTKEIEKIKEDIKKNETIISS 465

Query: 494 RSRLLGIIKQELLSVKDELD--TPRRTRI-----VEGLLDMEDEDCIVREDMVVTVSHLG 546
              L   I ++L  + ++ D   PR+T I     VE +  +E+   +   D+ + +S  G
Sbjct: 466 DKALKKQIIKKLKEIANKEDYIKPRKTTINTEVKVEKVTVIEE---VKNYDVKIIISEHG 522

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK+VP S Y+         +   ++D+D +  +        VL F+  G VYK K+  +
Sbjct: 523 YVKKVPTSTYKED-------TEYKLKDDDRILKIIDAQNIGEVLTFTDKGVVYKTKISDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            +      G  + +   +   E+ T  +    D S   N+ VVF  ++G V +  L+ + 
Sbjct: 576 EVCKAGEFGTFIRSAAEIPDDEK-TVFITATGDFSG--NMIVVF--ENGKVAKFPLNVYE 630

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K+     +  + ++     ++ +I + +  G+ + F    I +   + + G + 
Sbjct: 631 TKQNRKKLINAFYTNVKPVAFYHVLEDVNIKMKSDGGKLLIFNSEMINLKNSKTTQGTQV 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L K  +++   I+   D
Sbjct: 691 MKLPKETKILKSRIIEELD 709


>gi|91093371|gb|ABE11566.1| GyrA [Escherichia coli]
 gi|91093393|gb|ABE11567.1| GyrA [Escherichia coli]
 gi|91093397|gb|ABE11568.1| GyrA [Escherichia coli]
 gi|91093415|gb|ABE11569.1| GyrA [Escherichia coli]
 gi|91093421|gb|ABE11570.1| GyrA [Escherichia coli]
 gi|91093439|gb|ABE11571.1| GyrA [Escherichia coli]
 gi|91093441|gb|ABE11572.1| GyrA [Escherichia coli]
 gi|91093447|gb|ABE11573.1| GyrA [Escherichia coli]
 gi|91093455|gb|ABE11574.1| GyrA [Escherichia coli]
 gi|91093483|gb|ABE11575.1| GyrA [Escherichia coli]
 gi|91093491|gb|ABE11576.1| GyrA [Escherichia coli]
 gi|91093493|gb|ABE11577.1| GyrA [Escherichia coli]
 gi|91093497|gb|ABE11579.1| GyrA [Escherichia coli]
          Length = 211

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 162/203 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVIDNPDIDLDALME 218
            EV++GC+A ID+ DI ++ LME
Sbjct: 188 TEVINGCLAYIDDEDISIEGLME 210


>gi|3548918|gb|AAC68575.1| DNA gyrase A [Providencia stuartii]
          Length = 196

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 158/195 (81%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  IVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRMA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNLG
Sbjct: 121 KIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNLG 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV+ GC+A ID+ DI
Sbjct: 181 EVISGCLAYIDDEDI 195


>gi|260748871|gb|ACX48752.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 157/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|311352804|gb|ADP93587.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352806|gb|ADP93588.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352808|gb|ADP93589.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352810|gb|ADP93590.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352816|gb|ADP93593.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352822|gb|ADP93596.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352824|gb|ADP93597.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352826|gb|ADP93598.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352828|gb|ADP93599.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352830|gb|ADP93600.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352832|gb|ADP93601.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352834|gb|ADP93602.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352836|gb|ADP93603.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352838|gb|ADP93604.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352840|gb|ADP93605.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352842|gb|ADP93606.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352846|gb|ADP93608.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352852|gb|ADP93611.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352856|gb|ADP93613.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352858|gb|ADP93614.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352862|gb|ADP93616.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352864|gb|ADP93617.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352866|gb|ADP93618.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352868|gb|ADP93619.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352870|gb|ADP93620.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352878|gb|ADP93624.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352880|gb|ADP93625.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352882|gb|ADP93626.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352884|gb|ADP93627.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352886|gb|ADP93628.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352894|gb|ADP93632.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352896|gb|ADP93633.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352898|gb|ADP93634.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352900|gb|ADP93635.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352904|gb|ADP93637.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352906|gb|ADP93638.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352908|gb|ADP93639.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352910|gb|ADP93640.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352912|gb|ADP93641.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352914|gb|ADP93642.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352916|gb|ADP93643.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352918|gb|ADP93644.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352920|gb|ADP93645.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352922|gb|ADP93646.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352924|gb|ADP93647.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352926|gb|ADP93648.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352928|gb|ADP93649.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352930|gb|ADP93650.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352932|gb|ADP93651.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352934|gb|ADP93652.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352936|gb|ADP93653.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352938|gb|ADP93654.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352940|gb|ADP93655.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352942|gb|ADP93656.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352944|gb|ADP93657.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352946|gb|ADP93658.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352948|gb|ADP93659.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352950|gb|ADP93660.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352952|gb|ADP93661.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352954|gb|ADP93662.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352956|gb|ADP93663.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352960|gb|ADP93665.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352962|gb|ADP93666.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352966|gb|ADP93668.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352968|gb|ADP93669.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352970|gb|ADP93670.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352972|gb|ADP93671.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352974|gb|ADP93672.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352978|gb|ADP93674.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352980|gb|ADP93675.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352984|gb|ADP93677.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352988|gb|ADP93679.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352994|gb|ADP93682.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352996|gb|ADP93683.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352998|gb|ADP93684.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353004|gb|ADP93687.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353006|gb|ADP93688.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353008|gb|ADP93689.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353010|gb|ADP93690.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353014|gb|ADP93692.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353016|gb|ADP93693.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353022|gb|ADP93696.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353024|gb|ADP93697.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353026|gb|ADP93698.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353028|gb|ADP93699.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353042|gb|ADP93706.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353044|gb|ADP93707.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353048|gb|ADP93709.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353050|gb|ADP93710.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353052|gb|ADP93711.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353054|gb|ADP93712.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353056|gb|ADP93713.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353058|gb|ADP93714.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353062|gb|ADP93716.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353064|gb|ADP93717.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353066|gb|ADP93718.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353068|gb|ADP93719.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353070|gb|ADP93720.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353072|gb|ADP93721.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353074|gb|ADP93722.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353076|gb|ADP93723.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353078|gb|ADP93724.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353080|gb|ADP93725.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYI 230


>gi|311352812|gb|ADP93591.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352814|gb|ADP93592.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352818|gb|ADP93594.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352820|gb|ADP93595.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352844|gb|ADP93607.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352848|gb|ADP93609.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352850|gb|ADP93610.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352860|gb|ADP93615.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352872|gb|ADP93621.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352874|gb|ADP93622.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352876|gb|ADP93623.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352888|gb|ADP93629.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352890|gb|ADP93630.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352892|gb|ADP93631.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352902|gb|ADP93636.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352958|gb|ADP93664.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352964|gb|ADP93667.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352976|gb|ADP93673.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352982|gb|ADP93676.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352986|gb|ADP93678.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352990|gb|ADP93680.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352992|gb|ADP93681.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353000|gb|ADP93685.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353002|gb|ADP93686.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353012|gb|ADP93691.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353030|gb|ADP93700.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353032|gb|ADP93701.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353034|gb|ADP93702.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353036|gb|ADP93703.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353038|gb|ADP93704.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353040|gb|ADP93705.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353046|gb|ADP93708.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353060|gb|ADP93715.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/231 (54%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYI 230


>gi|114224641|gb|ABI55205.1| DNA gyrase A [Shigella sonnei]
          Length = 200

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 157/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|330466713|ref|YP_004404456.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
 gi|328809684|gb|AEB43856.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
          Length = 1256

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 314/645 (48%), Gaps = 67/645 (10%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE R+ + A  L+ +LG++TVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+
Sbjct: 564  TEARMSREAMLLVGELGEETVDVEPNYDGSLTQPTVLPAAFPNLLVNGTSGIAVGMATNM 623

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
              HNLGEVV     +I +P+  LD LME + GPD PTG ++LG   ++ AY TGRG + +
Sbjct: 624  IPHNLGEVVSAARWLIRHPNATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVRM 683

Query: 251  RGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIA-ELVREKRIVDIADLRDESDRQ- 306
            RG   I    G   R+ I V E+PY V    ++  I  E+ + KR+  IAD++D +DR+ 
Sbjct: 684  RGKVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAITNEVTKTKRLTGIADVKDLTDREN 743

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
            G R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F+A R 
Sbjct: 744  GTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVFLAHRY 803

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            EVV RR+ Y   K ++R H++ GL IA+ ++D+VV++IR S + + A+  LMQ+      
Sbjct: 804  EVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVKLIRASEDAQAAKDGLMQK------ 857

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  LSE+Q   IL+  L RLT   R ++  E   L  EI E
Sbjct: 858  --------------------FKLSEIQASYILDTPLRRLTKYDRLELEAEQEKLRAEIAE 897

Query: 487  CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------------GLLDMEDEDCI 533
               IL   + L  ++  EL +V  +   PRRT +V+             G L++ D+ C 
Sbjct: 898  LSTILDDENVLKKLVSDELAAVVKQFAAPRRTTLVDGDLKEVLAASAPAGPLEVADDPC- 956

Query: 534  VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                  V +S  G V R   +    +   G+ R G V  D   V  +   +    VL  +
Sbjct: 957  -----QVILSATGLVART--AAESEEAAEGRRRHGRVKHDA--VRAVVHSTARGRVLLVT 1007

Query: 594  SLGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPF-PEDESSWNNL 646
            S G  +K  V  LP+   QA       G +   ++ L  GE +  + P  P  E S    
Sbjct: 1008 SAGRAFKVDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLGPTAEGSPG-- 1065

Query: 647  YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQC 705
             +   T+ G V+       ++ +    I ++    DE++     T   + L   T     
Sbjct: 1066 -LALGTRQGVVKVCAPDWPVRSDEFEVIGLR--DGDEVVGATWLTDGAESLAFLTSAASL 1122

Query: 706  VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +RFP   +R   G    G+ G++L  G QV+    V   D  + E
Sbjct: 1123 LRFPAGTVRP-QGLKGGGMAGVALPDGAQVVYFGAVRTDDPQHGE 1166



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 84/110 (76%), Gaps = 1/110 (0%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK AR+ G+
Sbjct: 26  LVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYAMYESGFRPDRAHVKSARVVGD 85

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           VMG+YHPHG+ AIYDA+ RMAQD+SL + LI+G GNFGS D D PAA RY
Sbjct: 86  VMGRYHPHGDTAIYDAMVRMAQDFSLNVPLIDGHGNFGSPD-DGPAAARY 134


>gi|52843256|gb|AAU88057.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843258|gb|AAU88058.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843260|gb|AAU88059.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  268 bits (685), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 157/198 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|330939645|gb|EGH42950.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 194

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 151/192 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNLGEV+DGC
Sbjct: 183 PPHNLGEVIDGC 194


>gi|260748875|gb|ACX48754.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 157/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|124806110|ref|XP_001350630.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496755|gb|AAN36310.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1222

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 171/527 (32%), Positives = 291/527 (55%), Gaps = 63/527 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++    +KK Y KCARI
Sbjct: 175 VEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKKCARI 234

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      LLI+G GNFGSV+ +  AA RYTE ++  
Sbjct: 235 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVEYNA-AAMRYTEAKISS 293

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++  + V++  N+DG+ +EP VLC++ P +L+NG  GIAV + ++IP HNL 
Sbjct: 294 FCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPCHNLI 353

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRG--- 252
           +V + C+  + N +I  D L  II+GPDF TG +I+ +  I KN Y +G+G+  IR    
Sbjct: 354 DVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIRSNVF 413

Query: 253 -----------------VSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
                            +S IE +  D+  ++I++  +P  V    ++E I  L+ +K+ 
Sbjct: 414 FEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLNDKKN 473

Query: 294 VD---IADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGY 347
                +  +RDES+++  R+V+ELK+ +  + I   L+ L++YT++Q  +  N V + GY
Sbjct: 474 EHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVCI-GY 532

Query: 348 KP--ERFTLIGILKAFVAFREEVVVRRTKY-LLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +    +F+L   +K +   R + +  +T Y + NK   +   ++ L + + N  +++ II
Sbjct: 533 ENTYTQFSLKSFIKLWCNNRIKFI--KTNYEIKNKNLQKQLNIIDLYLIIQN--KILDII 588

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
            F            Q++ N   I+            +       L+  Q + IL ++L +
Sbjct: 589 TF-----------FQKNQNIEQIQ------------LYLKNNFKLNPEQIKYILSIKLQK 625

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
           L  +   D  ++ N +  +IK   +I+++   +  +I QEL+ +K++
Sbjct: 626 LINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNK 672



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 58/232 (25%)

Query: 603  VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            V+ L + S  ++G  +  I+     + IT I  F E++      Y++  +++G ++    
Sbjct: 942  VYDLHLSSYDSKGTPINQIIH--SSKNITGITKFQENKK-----YLIVCSENGKMKVINN 994

Query: 663  SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              F++  + G   +KL    + +    C   ++ ++ TK G  ++FP+S+ ++ + +NS+
Sbjct: 995  DVFLKRKKKG---IKLFKNKKNIYFSYCNFNDNCIVGTKNGYIIQFPLSSFKI-SKKNSL 1050

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            G + ISLAK D+V+ +                                         S E
Sbjct: 1051 GNKCISLAKNDKVVDLL----------------------------------------SYE 1070

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
             N       E  LK   I+ V++ GFGK  +  + +I  + GKG R     K
Sbjct: 1071 NN-------EKNLKNYKIIFVTKNGFGKMINLNELKIQKKKGKGHRIMKFKK 1115


>gi|52843262|gb|AAU88060.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843264|gb|AAU88061.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  266 bits (681), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 156/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|297578850|ref|ZP_06940778.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
 gi|297536444|gb|EFH75277.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
          Length = 460

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 165/484 (34%), Positives = 254/484 (52%), Gaps = 90/484 (18%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI   + IL+S  RL+ +I++
Sbjct: 10  DGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIRE 69

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL +++      RRT I     D++ E+ I RED+VVT+SH GYVK   LS Y AQRRGG
Sbjct: 70  ELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG 129

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++LP+ S  ARGK ++N+L 
Sbjct: 130 KGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLP 189

Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           L + ERIT I+P   F ED+      ++  AT  G V++  L  F  +  +G IA+ L  
Sbjct: 190 LEENERITAILPVTEFSEDK------FIFMATGDGTVKKTSLDQFANVRANGLIALNLRD 243

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRF--------------PI-----------SAIRV 715
            D ++ V+    E++I+L +K G+ VRF              P+             +R 
Sbjct: 244 EDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRP 303

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ LA GDQV+S+ IV   + D                            
Sbjct: 304 M-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD---------------------------- 333

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +LTV+E G+GKRTS  ++    R  +G+ +  VS+ 
Sbjct: 334 ------------------------VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSER 369

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV +  T++ E VV ++
Sbjct: 370 N--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQ 427

Query: 896 RIRE 899
           RI E
Sbjct: 428 RIDE 431


>gi|262477434|gb|ACY68194.1| DNA gyrase subunit A [Escherichia coli]
          Length = 199

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 157/199 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC++ ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLSYIDDEDI 180

Query: 212 DLDALMEIIRGPDFPTGAV 230
            ++ LME I GPDFPT A+
Sbjct: 181 SIEGLMEHIPGPDFPTAAI 199


>gi|4558480|gb|AAD22627.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 211

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 159/211 (75%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K A
Sbjct: 1   IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L
Sbjct: 121 TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
            E+VDG + ++D+ D  L+ LM+ I+GPDFP
Sbjct: 181 NELVDGLLYLLDHKDASLEDLMQFIKGPDFP 211


>gi|14994223|gb|AAK73347.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/194 (61%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D+ +D LM  I
Sbjct: 181 ENGDLTIDELMTYI 194


>gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 672

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 214/652 (32%), Positives = 324/652 (49%), Gaps = 73/652 (11%)

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGS
Sbjct: 1   AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
           F+EP  L +R P VL+NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I
Sbjct: 61  FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120

Query: 221 RGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
            GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   
Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180

Query: 280 MLEKIAELVR-----------------EKRIVDIAD-LRDESDRQ-GYRVVIELK-RGAS 319
           +LE+I EL                   +K ++D+ D +RDES ++   R+V E K R   
Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               +N L  +TSL+S  ++N+V +    +P +  L+ IL  +V FR++ + RR ++ L 
Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR H+L G  I   N+DEV+RIIR S  P+ A   LM                    
Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA---LMS------------------- 338

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q   ILE+RL +L  L +  I  EL +L  E  +  D+L++ + + 
Sbjct: 339 -------AFGLTERQADDILEIRLRQLARLEKIKIEKELEALRDEKAKLEDLLANDNAMK 391

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++ +E+ +   +    RRT +++       E  +V E + V VS  G+V        RA
Sbjct: 392 RLMIKEIEADAKQYGDDRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RA 442

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            +  G   +    +  D +   F   T   ++ + S G VY   V  LP G  +  G  +
Sbjct: 443 LKGHGLDPASFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPV 500

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            +++ L  G  +        D+       ++ A+ +G     K+ D +   ++GK  M +
Sbjct: 501 TSLIELESGSHLMHYYAAAADQP------LLLASSNGFGFIAKVGDMVSRVKAGKAFMTI 554

Query: 679 DSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           D+    L+ +        +   +  G+ + F I  ++  +G    G RG++L
Sbjct: 555 DAGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKTLSG----GGRGVTL 602


>gi|3548906|gb|AAC68569.1| DNA gyrase A [Citrobacter freundii]
          Length = 196

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/195 (62%), Positives = 156/195 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV++GC+A ID+ DI
Sbjct: 181 EVINGCLAYIDDEDI 195


>gi|52843250|gb|AAU88054.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843254|gb|AAU88056.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 156/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|3548916|gb|AAC68574.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 196

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 157/195 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV++GC+A +D+ DI
Sbjct: 181 EVINGCLAYVDDEDI 195


>gi|3548910|gb|AAC68571.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 196

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 156/195 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TRVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV++GC+A +DN DI
Sbjct: 181 EVINGCLAYVDNEDI 195


>gi|325678874|ref|ZP_08158472.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
 gi|324109378|gb|EGC03596.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
          Length = 747

 Score =  264 bits (675), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 216/732 (29%), Positives = 354/732 (48%), Gaps = 61/732 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA P++ DG KP HR++L+ M  MG+    K  KCA I G 
Sbjct: 32  ITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGL-IKGKLTKCANIVGA 89

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGD-PPAAERYTECRLQK 137
            M K +PHG+ AIY+ L R+++ + +L    ++ +GNFG S   D   AA RYTE +L+ 
Sbjct: 90  TM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTEAKLEP 148

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYD +  EP +  A +P +LVN   GI V MA+ +   NL E
Sbjct: 149 ICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASAVCPFNLTE 208

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           V +  +A++ +PD +    ++ ++GPDFP G  +L     +   Y TGRGS+ +R     
Sbjct: 209 VCETAIALMKDPDANA---LDTLKGPDFPGGGYLLYDEAELDKIYRTGRGSVKLRAKY-- 263

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            + + D   I VTEIP      A++EKI  LV+  +I +I+ +RDE+D  G ++ I++K+
Sbjct: 264 -RYNSDERCIEVTEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIGIDIKK 322

Query: 317 GASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           G   + ++ +LY+ T LQ  +S N  + ++GY P+   +  IL  +  FR + V RR  Y
Sbjct: 323 GVDPEKLMQKLYKLTPLQDTYSCNFNILVHGY-PKVMGVYEILDEWTKFRLDCVKRRVNY 381

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K RDR H+L GL   + ++D+ ++IIR +         LM                 
Sbjct: 382 DLKKKRDRLHLLKGLGKILLDIDKAIKIIRETEEESEVVPNLM----------------- 424

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN---ELNSLGIEIKECLDILS 492
                IG      + EVQ   + E++L     L R+ I     +   L  EI E  +IL 
Sbjct: 425 -----IG----FGIDEVQAEYVAEIKLRH---LNREYILKRTADTERLEKEIAELEEILG 472

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGYVKR 550
           S  +L  +I  EL  V       R+T+        E E+    ED      +S  GY K+
Sbjct: 473 SEKKLKQVIISELNDVIKNYGQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKK 532

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +   R         S   +++ D +      S    +LFFS    VYK K  R     
Sbjct: 533 CTMQSLRMA-------SDQKLKEGDRMMAEIESSNRAELLFFSDKAAVYKAKASRFGNTK 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G  +  +L  + GE  + ++     E+   + Y++F   +G   +  L+ +     
Sbjct: 586 ASDLGDYIPAVLGFDSGEGFSAMV-----ETMDYSGYLLFVYDNGKAAKVPLNAYETKTN 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             K++     +  ++++        ++L T  G+ + F  + +     RN+ GV+ ++L 
Sbjct: 641 RKKLSNAYCEKAGLVTILKLNDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTLK 700

Query: 731 KGDQVISMAIVL 742
             +  I  A ++
Sbjct: 701 AKNAKIEKAYIV 712


>gi|110589971|gb|ABG77432.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 155/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEHIPGPDF 194


>gi|117654339|gb|ABK55600.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 161/201 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVRE 290
           E+PYQVN A ++EKIA+LVR+
Sbjct: 181 ELPYQVNXAKLIEKIADLVRD 201


>gi|3548908|gb|AAC68570.1| DNA gyrase A [Escherichia coli DSM 30083]
          Length = 196

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 157/195 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV++GC+A ID+ DI
Sbjct: 181 EVINGCLAYIDDEDI 195


>gi|52843248|gb|AAU88053.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843252|gb|AAU88055.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 155/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|110589967|gb|ABG77430.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  263 bits (673), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 154/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|118132713|gb|ABK60209.1| DNA gyrase A [Shigella boydii]
          Length = 198

 Score =  263 bits (673), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 121/198 (61%), Positives = 157/198 (79%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKY
Sbjct: 1   KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 60

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ D
Sbjct: 61  HPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 120

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 180

Query: 206 IDNPDIDLDALMEIIRGP 223
           ID+ DI ++ LME I GP
Sbjct: 181 IDDEDISIEGLMEHIPGP 198


>gi|3548914|gb|AAC68573.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 196

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 156/195 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV++GC+A ++N DI
Sbjct: 181 EVINGCLAYVENEDI 195


>gi|190351702|gb|ACE76308.1| GyrA [Clostridium difficile]
          Length = 192

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 152/192 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHGN A+Y
Sbjct: 1   SVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
            A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+
Sbjct: 61  YAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFK 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +D
Sbjct: 121 PNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVD 180

Query: 215 ALMEIIRGPDFP 226
            L++ ++GPDFP
Sbjct: 181 DLIKFVQGPDFP 192


>gi|117654327|gb|ABK55594.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 203

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/203 (58%), Positives = 162/203 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKR 292
           E+ YQVNKA ++EKIA+LV +K+
Sbjct: 181 ELXYQVNKAKLIEKIADLVXDKK 203


>gi|3548912|gb|AAC68572.1| DNA gyrase A [Enterobacter cloacae]
          Length = 196

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 119/195 (61%), Positives = 157/195 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNIT 180

Query: 197 EVVDGCVAVIDNPDI 211
           EV++GC+A ID+ DI
Sbjct: 181 EVINGCLAYIDDEDI 195


>gi|114224639|gb|ABI55204.1| DNA gyrase A [Shigella flexneri]
          Length = 196

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 155/196 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDF 225
           DI ++ LME I GPDF
Sbjct: 181 DISIEGLMEHIPGPDF 196


>gi|313611853|gb|EFR86319.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 207

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/204 (58%), Positives = 158/204 (77%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDL 213
           IPTH+LGEV+DG +A+  NP+I +
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITI 206


>gi|213618739|ref|ZP_03372565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 199

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 155/192 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187

Query: 196 GEVVDGCVAVID 207
            EV++GC+A ID
Sbjct: 188 TEVINGCLAYID 199


>gi|110589963|gb|ABG77428.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589969|gb|ABG77431.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589975|gb|ABG77434.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589977|gb|ABG77435.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/194 (61%), Positives = 154/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|23429763|gb|AAN23863.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + R+ QD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDSAVYDTIVRLVQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N ++ +D LM  I
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|23429751|gb|AAN23862.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSPGIAVGMATNIPPHNLTEIVNGCRALI 180

Query: 207 DNPDIDLDALMEII 220
           +N ++ +D LM  I
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|117654337|gb|ABK55599.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  261 bits (666), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 119/201 (59%), Positives = 159/201 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKEXIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVRE 290
           E+PYQVN A ++EKIA+LV +
Sbjct: 181 ELPYQVNXAKLIEKIADLVXD 201


>gi|110589965|gb|ABG77429.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589973|gb|ABG77433.1| DNA gyrase A [Shigella flexneri]
          Length = 194

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/194 (61%), Positives = 153/194 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|257362206|gb|ACV53188.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|23429757|gb|AAN23864.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 153/194 (78%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L +GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLADGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|14994221|gb|AAK73346.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  260 bits (665), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|23429770|gb|AAN23865.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  260 bits (664), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF + ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAVNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|118638612|gb|ABL09463.1| gyrase subunit A [Clostridium difficile]
          Length = 197

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/192 (60%), Positives = 152/192 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPDF 225
           D L++ ++GPDF
Sbjct: 181 DDLIKFVQGPDF 192


>gi|257362209|gb|ACV53189.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362193|gb|ACV53184.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|317057035|ref|YP_004105502.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449304|gb|ADU22868.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 745

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 222/738 (30%), Positives = 361/738 (48%), Gaps = 62/738 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           IT  ++ +Y+ YA++VI+ RA P++ DG KP HR++L+ M  MG+    K  KCA I G 
Sbjct: 31  ITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGL-IKGKLTKCANIVGA 88

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGDPP-AAERYTECRLQK 137
            M K +PHG+ AIY+ L R+++ + +L    ++ +GNFG S   D   AA RYTE +L+ 
Sbjct: 89  TM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTEAKLEP 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L  D+ K+TVDF PNYD +  EP +  A +P +LVN   GI V MA+++   NL E
Sbjct: 148 ICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASSVCPFNLAE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           V +  +A+I N D +    ++ ++GPDFP G  +L     ++  Y TGRGS+ +R     
Sbjct: 208 VCETAIALIKNKDANA---LDTLKGPDFPGGGYLLYDEAELEKIYRTGRGSVKLRAKYRF 264

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            K   +   I +TEIP      A++EKI  LV+  +I +I+ +RDE+D  G ++ I++K+
Sbjct: 265 NK---EERCIEITEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIGIDIKK 321

Query: 317 GASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           G   D ++ +LY+ T LQ  +S N  + ++GY P+   +  IL  +  FR + V RR +Y
Sbjct: 322 GVDPDKLMQKLYKLTPLQDTYSCNFNILVHGY-PKVMGVYEILDEWTRFRVDCVRRRVEY 380

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K +D+ H+L GL   + ++D+ +RIIR +         LM                 
Sbjct: 381 DLKKKKDKLHLLKGLGKILLDIDKAIRIIRETEEESEVIPNLM----------------- 423

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI---RNELNSLGIEIKECLDILS 492
                IG      + E+Q   + E++L     L R+ I    +E   L  EI E  D+L 
Sbjct: 424 -----IG----FGIDEIQADYVAEIKLRH---LNREYILKRTSETEKLEKEIAELEDVLG 471

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGYVKR 550
           S  ++  II +EL  V       R+T+        E E+    ED      +S  GY K+
Sbjct: 472 SEKKIKDIIIRELKDVIKNYGQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFKK 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +   R         S   +++ D +      S    +LFFS    VYK K  R     
Sbjct: 532 CTMQSLRMA-------SDQKLKEGDRMMSETESSNRAELLFFSDKASVYKSKASRFGNTK 584

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               G  +  +L  + GE   T++     E+   +  ++F  ++G   +  L  +     
Sbjct: 585 ASDLGDYIPAVLGFDNGEAFHTMV-----ETMDYSGCLLFVFENGKAAKVPLDSYATKTN 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL- 729
             K+A     +  ++++   T    ++L T  G+ + F  + +     RN+ GV+ ++L 
Sbjct: 640 RKKLANAYSDKSPLVAILKLTDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTLK 699

Query: 730 AKGDQVISMAIVLHADAD 747
           AK  +V    IV   +A+
Sbjct: 700 AKNAKVEKAYIVSDEEAE 717


>gi|315928687|gb|EFV07969.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 537

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 184/586 (31%), Positives = 294/586 (50%), Gaps = 121/586 (20%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           ++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT + L KAR RAH+L GL I
Sbjct: 1   MESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+DEV+ +I+ S +  TAR  L+ +                            LSE+
Sbjct: 61  ALDNIDEVIALIKNSSDNNTARDSLVAK--------------------------FGLSEL 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L  +I+ EL  ++ + 
Sbjct: 95  QANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF 154

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V   
Sbjct: 155 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 214

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+GKA++N+++L   E+I  
Sbjct: 215 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMA 274

Query: 633 IMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---- 687
           I+P  + DES      + F TK+G V+R  LS++  I   G  A+ LD  DE+++     
Sbjct: 275 IIPTTDFDESK----SLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQ 330

Query: 688 --------------------------------ETCTQENDILLTTKLGQCVRFPISAIRV 715
                                              TQ   +   TK G C++FP++ +R 
Sbjct: 331 RDEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVRE 390

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S GV  I   + +  +  A+V+  D                              
Sbjct: 391 I-GRVSRGVTAIKFKEKNDELVGAVVIEND------------------------------ 419

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                EQ IL++S KG GKRT++ ++R+ +R GKG+    +++ 
Sbjct: 420 ---------------------EQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE- 457

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            +   L++V  V++   ++ ++  G +IRV +  IR A R T GV+
Sbjct: 458 -KTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGVI 502


>gi|257362181|gb|ACV53180.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 149/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362190|gb|ACV53183.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+ KYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVISKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362178|gb|ACV53179.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|229815926|ref|ZP_04446249.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
 gi|229808479|gb|EEP44258.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
          Length = 746

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 218/735 (29%), Positives = 368/735 (50%), Gaps = 59/735 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  IT+ ++ +Y+ YA++  + RA P++ DG KP HR++L+ M +MG+   ++  K A
Sbjct: 27  VTAQPITETLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGERQ-KSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV-DGD-PPAAERYTE 132
            I G+ M K +PHG+AAIY+ + R+A  + +L    +E +GNFG    GD   AA RYTE
Sbjct: 85  NIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L      +  D+ KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++I  
Sbjct: 144 AKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICG 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
            NL EV    +  +++P  DL   +E +  PDF TG  +I  R  ++    TG GS  IR
Sbjct: 204 FNLNEVCTATMHFLEDPSCDL---LEYMPMPDFSTGGEIIYRREEMERIIETGLGSFQIR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S       +R  I V EIPY      ++++I +L +E ++ +IAD+RDE+D  G R+ 
Sbjct: 261 --SRWRWVPEER-IIEVYEIPYTTKTDIIIDRIIKLSKEGKVREIADIRDETDLSGLRIA 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVV 370
           I+LKRG   + ++ +LYR T+LQ  FS N  V ++GY P    +  IL  +VA+R +   
Sbjct: 318 IDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGY-PRVMGVRQILHEWVAWRIQSTR 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K  +R H+L GL   + ++D+ + IIR +                A  + +L
Sbjct: 377 RRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGT-------------KLEAEVVPNL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +   D             + E Q   + EL+L  +      +   ++  L  EI E  +I
Sbjct: 424 MRGFD-------------IDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELEEI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           LSS   +  +I+ EL +V  +   PRRT  +E   ++++  E  +    + + +S  GY+
Sbjct: 471 LSSEDNIKKVIRDELAAVNKKYVMPRRTGRIEPSDVIEVSLEPEVEEYPVTIMLSREGYL 530

Query: 549 KRVPLSVYR--AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           K++   V R  A+ +   G       DE F+   F  +    +L F++   VYK KV   
Sbjct: 531 KKMTDRVLRKAAELKYKDG-------DEPFIE--FPSANTHELLVFTNKSQVYKCKVAAF 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L   L ++  E +  ++  PED  +     V+F  ++G   R  L+ ++
Sbjct: 582 EDTKSAQLGSYLATDLEMDPDESVIWVID-PEDYKA----DVLFVFENGRAVRVALAGYV 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 ++   +    ++L  +   ++ DI L +   + + F  S ++     N+ GV+ 
Sbjct: 637 TKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMNFNTSLLKTKTTTNTQGVQA 696

Query: 727 ISLAKGDQVISMAIV 741
            +  KG  V +++ V
Sbjct: 697 FTAKKGRVVTTVSTV 711


>gi|28916612|gb|AAO59539.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 197

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/197 (61%), Positives = 158/197 (80%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDT+D++ NYDGS  +PVVL +R PN+LVNG  GIAVGMATNIP H LGE++DG +A  +
Sbjct: 1   KDTIDYQDNYDGSEGDPVVLPSRLPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAGSE 60

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+
Sbjct: 61  NPGIPIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERII 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN L
Sbjct: 121 VTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNL 180

Query: 328 YRYTSLQSLFSVNMVAL 344
           Y+ T+LQ+ F +N++AL
Sbjct: 181 YKQTALQTSFGINLLAL 197


>gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 623

 Score =  258 bits (658), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 176/495 (35%), Positives = 261/495 (52%), Gaps = 52/495 (10%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L + A  L++ L +D+VDFRP YDG+ +EP V+ +  PN+L NG  GIAVGMAT
Sbjct: 2   RYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMAT 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGS 247
           +IP HNLGE+ D    +I  PD D+D L+  + GPDFPTG V++  +  I  AY TG+GS
Sbjct: 62  SIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKGS 121

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R    +EK S    QIV+TEIPYQV KA ++EKIAEL+ EK++  +AD+RDES  + 
Sbjct: 122 FRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDES-AED 180

Query: 308 YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL----NGY-KPERFTLIGILKAF 361
            R+V+E + R   A++++ QL+R T L+S FS+NM  L    +G+  P    L  +L+AF
Sbjct: 181 IRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRAF 240

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  V+ RRT++ L K   R  VL G     A+LD+V++IIRF+  P+    EL++  
Sbjct: 241 LDHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEPKA---ELIK-- 295

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                   T  LSEVQ  AIL +RL  L  L   +I+ E   L 
Sbjct: 296 ------------------------TFKLSEVQAEAILNMRLRSLNKLQELEIKTEHAELS 331

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDEDCIV 534
            E  +   +L+   R    I  +   ++           RRT +      + +  E  + 
Sbjct: 332 AEKADLEALLADEGRRWTTIAAQNAEIRKAFGGATALGKRRTELGDAPSAVVVPIEAYVE 391

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE + + +S  G++        RA +        +  ++ D +  L    T   +L F++
Sbjct: 392 REAITMVLSEKGWI--------RALKGHSDSPDALKFKEGDQLGHLLKAWTTDKILVFAT 443

Query: 595 LGFVYKEKVWRLPIG 609
            G  Y     +LP G
Sbjct: 444 DGRFYTIGGDKLPSG 458


>gi|49425508|gb|AAT66069.1| DNA gyrase A [Shigella dysenteriae]
          Length = 193

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 152/192 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 2   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 62  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID+ DI
Sbjct: 122 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDDEDI 181

Query: 212 DLDALMEIIRGP 223
            ++ LME I GP
Sbjct: 182 SIEGLMEHIPGP 193


>gi|257362199|gb|ACV53186.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  257 bits (657), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362184|gb|ACV53181.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  257 bits (657), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|213618945|ref|ZP_03372771.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 288

 Score =  257 bits (656), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 138/284 (48%), Positives = 187/284 (65%), Gaps = 9/284 (3%)

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-RE 264
           IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  +   RE
Sbjct: 1   IDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRE 60

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+KR A  +V+L
Sbjct: 61  TIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL 120

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRA
Sbjct: 121 NNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRA 180

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY----- 439
           H+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++   D +      
Sbjct: 181 HILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWL 240

Query: 440 --TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L
Sbjct: 241 EPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 284


>gi|302839180|ref|XP_002951147.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
 gi|300263476|gb|EFJ47676.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f.
           nagariensis]
          Length = 1159

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/244 (49%), Positives = 166/244 (68%), Gaps = 23/244 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    + DE  NSYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++G+  NK + KCA
Sbjct: 119 VEDTELYDEAYNSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYAMHELGLVHNKPFKKCA 178

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YD+L RMAQ +++R  L++G GNFGS+D DP AA RYTECRL
Sbjct: 179 RVVGEVLGKFHPHGDTAVYDSLVRMAQPFAMRQTLVDGHGNFGSLDNDPAAAMRYTECRL 238

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            +AA   LL D+G DTVD++P +D S                       VG+A+NIP HN
Sbjct: 239 TRAAGEALLADIGPDTVDWQPTFDES----------------------QVGLASNIPPHN 276

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVV    A+I +P +  + L++ +RGPDFPTG  ++    +   Y TGRGS+V+RG +
Sbjct: 277 LGEVVSALRALITDPRVTTEELLKHVRGPDFPTGGEVVVGPELLQVYETGRGSVVVRGKA 336

Query: 255 HIEK 258
            IE+
Sbjct: 337 TIER 340



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 173/349 (49%), Gaps = 40/349 (11%)

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E +V+TE+PYQV K+ ++  IAEL+  K++   +D+RDESDR G RVV+E+K+G S  V+
Sbjct: 397 ELVVITELPYQVYKSDLVASIAELIESKQLEGASDVRDESDRTGVRVVVEVKKGYSGKVV 456

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           L QLY  T LQ  F  N  +L   KP +  L  +L AF+ FR +VV RR+   L  A+ R
Sbjct: 457 LAQLYNSTRLQVNFHYNCTSLLNTKPLQMGLKDMLLAFLDFRCDVVQRRSSASLRAAQQR 516

Query: 384 AHVLVG---LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            H++ G   L      LD VV  +R + +   ARR L+ +                    
Sbjct: 517 LHLVEGFLRLLREEGRLDAVVADVRAAEDGGAARRALVAKHG------------------ 558

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LSE Q  AIL L L RLTGL    +  E   L   I    DIL++R+ LL +
Sbjct: 559 --------LSEEQAEAILGLTLRRLTGLEAAKLDQERRELQQSIARLGDILANRTTLLAV 610

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMED-------EDCIVREDMVVTVSHLGYVKRVPL 553
           ++QE  ++      PRRT +V      ED       E  +  +  +V  S  G+++R+  
Sbjct: 611 VEQEAEALAAAFPEPRRTALVAA----EDVPATPSLESLVPPKPCLVLASRRGFLRRLAG 666

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
               AQ R  +G+SG+ +R  D +  L   S    ++  +  G ++K +
Sbjct: 667 DSLTAQNRNTRGKSGIRLRSGDQLASLVAGSDRDLLMVVTPDGRMFKTR 715


>gi|257362196|gb|ACV53185.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362187|gb|ACV53182.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+ KYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVISKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362203|gb|ACV53187.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|118638608|gb|ABL09461.1| gyrase subunit A [Clostridium difficile]
          Length = 195

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 151/191 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPD 224
           D L++ ++GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|118638610|gb|ABL09462.1| gyrase subunit A [Clostridium difficile]
          Length = 194

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 151/191 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPD 224
           D L++ ++GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|117654335|gb|ABK55598.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 198

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/198 (58%), Positives = 156/198 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAEL 287
           E+P QVNKA ++E IA+L
Sbjct: 181 ELPXQVNKAKLIEXIADL 198


>gi|121822772|gb|ABM65607.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/187 (62%), Positives = 150/187 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALME 218
            ++ LME
Sbjct: 181 SIEGLME 187


>gi|156103257|ref|XP_001617321.1| DNA GyrAse a-subunit [Plasmodium vivax SaI-1]
 gi|148806195|gb|EDL47594.1| DNA GyrAse a-subunit, putative [Plasmodium vivax]
          Length = 1263

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 284/536 (52%), Gaps = 63/536 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I + +  ++L+YA  +IL R + D RDGLK V RRI++ M ++     K+ Y KCARI
Sbjct: 153 VEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKKCARI 212

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+ +  AA RYTE ++  
Sbjct: 213 VGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEYNA-AAMRYTEAKISN 271

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++ ++ V++  N+DG+  EP V C++ P +L+NG  GIAV + +NIP HNL 
Sbjct: 272 FCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHNLV 331

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSH 255
           +V++  ++ + NP I  D L  II+GPDF TG +I+ +   ++N Y TGRGSI IR    
Sbjct: 332 DVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSNVF 391

Query: 256 IEKTSGDRE----------------------QIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           +E T  D++                      ++V+  +P  V    ++E +  ++ EK+ 
Sbjct: 392 LEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEKKN 451

Query: 294 VD---IADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVAL--- 344
                +  +RDES+++  R+V+EL++    + I   L+ +++YT +Q+ +  N V +   
Sbjct: 452 EHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIGHQ 511

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           N Y   +F+L   L+ +   R +  +R    + NK   +   ++ L I +    +++ II
Sbjct: 512 NSYT--QFSLKSFLQLWCENRIK-FIRNNLTIKNKNLQKELHIIDLYILIQ--KKILEII 566

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
            F           +Q++ N  +IK+                   L++ Q + IL +++ +
Sbjct: 567 SF-----------LQKNQNIEEIKNFF------------KKNFQLNDYQIQHILSMKIQK 603

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L  +           +   +++  D+++   R+  +I +EL  +K++  T    R+
Sbjct: 604 LVNIKNVHFGPHKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGTSSAGRL 659



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 71/150 (47%), Gaps = 11/150 (7%)

Query: 589  VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            +L   S    Y   V  L   S  ++G  +  ++  ++   IT +  F E +      Y+
Sbjct: 955  LLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSKS--ITGMAKFEESKK-----YL 1007

Query: 649  VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  +++G ++      F++  + G   ++L    + +    C   ++ ++ T  G  ++F
Sbjct: 1008 IVCSENGKMKIINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCIVGTASGHIIQF 1064

Query: 709  PISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            P+S  ++ + +NS+G + ISL K D+V+ +
Sbjct: 1065 PLSNFKI-SKKNSLGNKCISLGKNDKVVDL 1093


>gi|82793752|ref|XP_728165.1| DNA gyrase subunit A [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484380|gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
          Length = 968

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 164/532 (30%), Positives = 287/532 (53%), Gaps = 61/532 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++    ++K Y KCARI
Sbjct: 190 VEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGSDRKSYKKCARI 249

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+ +  AA RYTE R+  
Sbjct: 250 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEYNA-AAMRYTEARISD 308

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++  + VD+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HNL 
Sbjct: 309 FCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNLV 368

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRG--- 252
           +V++  +  + N  I  D L  +I+GPDF TG +I+ +   ++N Y TG+GSIVIR    
Sbjct: 369 DVINASINFLINEKITNDELFNLIKGPDFSTGGIIITKKDALRNIYNTGKGSIVIRSNVF 428

Query: 253 ----------VSHIEKTSG---------DREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
                     + HI + S            +++++  +P  V    ++E I  ++ E++ 
Sbjct: 429 YEYVRNNKTYIHHINELSNLENLECDNKSSKKLIIKNLPPNVKPNELIENIVTVLNERKN 488

Query: 294 VD---IADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSLFSVNMVALNGY 347
                ++ +RDES++   R+V+EL++ +  + I N    L++YTS++  +  N V + GY
Sbjct: 489 EHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTSMEINYHCNFVCI-GY 547

Query: 348 KPE--RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           +    +F+L   L+ +   R + + +  K   N  +   ++ + L + +    +++ II 
Sbjct: 548 ENSYTQFSLKPFLQLWCENRIKFIKKNYKIKNNNLQKELNI-IDLYLTIQ--KKILDIIS 604

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
           F           + ++ N   I++ +                 L+E Q + IL +++ +L
Sbjct: 605 F-----------LHKNQNIEQIQNYL------------KSNFKLNEDQIKYILSMKIQKL 641

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
             +   +   + N++  +IK    I+ +   +  II  EL+ +K++    ++
Sbjct: 642 INIKNINFDIQKNNIIKKIKSNQYIIDNVQEIKQIIINELIHIKNKYSLSKK 693


>gi|284154382|gb|ADB78292.1| DNA gyrase [Bacillus sp. B-51132]
 gi|284154386|gb|ADB78294.1| DNA gyrase [Bacillus sp. B-51134]
 gi|284154392|gb|ADB78297.1| DNA gyrase [Bacillus sp. B-51137]
 gi|284154394|gb|ADB78298.1| DNA gyrase [Bacillus sp. B-51138]
 gi|284154412|gb|ADB78307.1| DNA gyrase [Bacillus sp. B-51148]
 gi|284154418|gb|ADB78310.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154436|gb|ADB78319.1| DNA gyrase [Bacillus sp. B-51161]
 gi|284154440|gb|ADB78321.1| DNA gyrase [Bacillus sp. B-51164]
 gi|284154466|gb|ADB78334.1| DNA gyrase [Bacillus sp. B-51180]
 gi|284154484|gb|ADB78343.1| DNA gyrase [Bacillus sp. B-51190]
 gi|284154488|gb|ADB78345.1| DNA gyrase [Bacillus sp. B-51192]
 gi|284154490|gb|ADB78346.1| DNA gyrase [Bacillus sp. B-51193]
 gi|284154542|gb|ADB78372.1| DNA gyrase [Bacillus sp. B-51220]
          Length = 189

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|90969028|gb|ABE02584.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           DN D  L+ +M+ I+GP
Sbjct: 181 DNKDASLEEIMQFIKGP 197


>gi|139438116|ref|ZP_01771669.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
 gi|133776313|gb|EBA40133.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
          Length = 706

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 218/717 (30%), Positives = 356/717 (49%), Gaps = 55/717 (7%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V + RA P++ DG KP HR++L+ M +MG+   ++  K A I G+ M K +PHG
Sbjct: 1   MPYAMSVNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGERQ-KSANIVGQTM-KLNPHG 57

Query: 90  NAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV-DGD-PPAAERYTECRLQKAAHFLLDDL 146
           +AAIY+ + R+A  + +L    +E +GNFG    GD   AA RYTE +L   +  +  D+
Sbjct: 58  DAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLSYAASRYTEAKLSPISAEIFKDI 117

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++I   NL EV    +  +
Sbjct: 118 DKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICGFNLNEVCTATMHYL 177

Query: 207 DNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
            +PD DL   +E +  PDF TG  +I  R  ++    TG GS  IR  S       +R  
Sbjct: 178 QDPDCDL---LEYMPMPDFSTGGEIIYRREEMEKIIETGLGSFQIR--SRWRWIPEER-I 231

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I V EIPY      ++E+I +L +E ++ +IAD+RDE+D  G R+ I+LKRG   D ++ 
Sbjct: 232 IEVYEIPYTTKTDVIIERIVKLSKEGKVKEIADIRDETDLSGLRIAIDLKRGVDPDKLMA 291

Query: 326 QLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           +LYR T+LQ  FS N  V ++GY P    +  IL  +V +R E   RR  + L K  +R 
Sbjct: 292 KLYRSTTLQDSFSCNFNVLVDGY-PRVMGVRQILHEWVKWRIESTRRRINFDLGKKSERL 350

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL   + ++D+ + IIR +                A  + +L+   D         
Sbjct: 351 HLLHGLEAILLDIDKAIAIIRGT-------------KLEAEVVPNLMKGFD--------- 388

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               + E Q   + EL+L  +      +   ++  L  EI E  +ILSS   +  +I  E
Sbjct: 389 ----IDETQAEFVAELKLRNINEEYILNRTKDIAKLESEIAELEEILSSEENIKKVISDE 444

Query: 505 LLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L +V  +   PRRT  +E   ++++  E  +    + + +S  GY+K++   V + +   
Sbjct: 445 LAAVNKKYVMPRRTGRIEPHEVIEVSLEPEVEEYPVTIMLSRDGYLKKMTDRVLK-KATT 503

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K + G    D+ F+   F  S    +L F++   VYK KV           G  L   L
Sbjct: 504 LKYKDG----DKPFIE--FPSSNTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDL 557

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            +   E +  ++  PED  +     V+F  ++G V R  LS ++      ++   +    
Sbjct: 558 EMEPDESVIWVID-PEDYKA----DVLFVFENGRVVRVALSGYVTKTNRKRLKNAIYGGS 612

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           ++L  +   ++ DI L +   + + F  S ++     N+ GV+  +  KG  V ++ 
Sbjct: 613 KLLYAQVLKEDRDIALVSSDYRLMNFNTSLLKTKTTTNTQGVQAFTAKKGRSVTTVG 669


>gi|321116498|dbj|BAJ72201.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 194

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 154/191 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           ++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G
Sbjct: 1   NLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A
Sbjct: 61  DVMGKYHPHGDSSIYAAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL E +
Sbjct: 121 LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESI 180

Query: 200 DGCVAVIDNPD 210
           D    V+++PD
Sbjct: 181 DAVKMVMEHPD 191


>gi|10717007|gb|AAG22004.1|AF282315_1 gyrase subunit A [Yersinia pseudotuberculosis]
          Length = 178

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/178 (65%), Positives = 144/178 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 121 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 178


>gi|210630763|ref|ZP_03296587.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
 gi|210160359|gb|EEA91330.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  254 bits (649), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 217/724 (29%), Positives = 362/724 (50%), Gaps = 55/724 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  IT  ++ +Y+ YA++  + RA P++ DG KP HR++L+ M +MG+   ++  K A
Sbjct: 27  VTAQPITKTLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGERQ-KSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV-DGD-PPAAERYTE 132
            I G+ M K +PHG+AAIY+ + R+A  + +L    +E +GNFG    GD   AA RYTE
Sbjct: 85  NIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L      +  D+ KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++I  
Sbjct: 144 AKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICG 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
            NL EV    +  +++P  DL   +E +  PDF TG  +I  R  ++    TG GS  IR
Sbjct: 204 FNLNEVCTATMHYLEDPSCDL---LEYMPMPDFSTGGEIIYRREEMERIIETGLGSFQIR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S       +R  I V EIPY      ++++I +L +E ++ +IAD+RDE+D  G R+ 
Sbjct: 261 --SRWRWVPEER-IIEVYEIPYTTKTDVIIDRIVKLSKEGKVREIADIRDETDLSGLRIA 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVV 370
           I+LKRG   + ++ +LYR T+LQ  FS N  V ++GY P    +  IL  +VA+R +   
Sbjct: 318 IDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGY-PRVMGVRQILHEWVAWRVQSTR 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K  +R H+L GL   + ++D+ + IIR +                A  + +L
Sbjct: 377 RRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGT-------------KLEAEVVPNL 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +   D             + E Q   + EL+L  +      +   ++  L  EI E  +I
Sbjct: 424 MKGFD-------------IDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELEEI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           LSS   +  +I+ EL +V  +   PRRT  +E   ++++  E  I    + + +S  GY+
Sbjct: 471 LSSEDNIKKVIRDELAAVNKKYVMPRRTGRIEPSDVIEVSLEPEIEEYPVTIMLSREGYL 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++   V + +    K + G    DE F+ +    +TH  +L F++   VYK KV     
Sbjct: 531 KKMTDRVLK-KAAALKYKDG----DEPFI-EFPSANTH-ELLVFTNKSQVYKCKVAAFED 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                 G  L   L +   E +   +  PED  +     V+F  ++G   R  L+ ++  
Sbjct: 584 TKSAQLGSYLPTDLEMEPDESVIWAID-PEDYKA----DVLFIFENGRAVRVALAGYVTK 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
               ++   +    ++L  +   ++ DI L +   + + F  S ++     N+ GV+  +
Sbjct: 639 TNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMSFNTSLLKTKTTTNTQGVQAFT 698

Query: 729 LAKG 732
             KG
Sbjct: 699 AKKG 702


>gi|90969026|gb|ABE02583.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 151/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D+ L+ +M+ I+GP
Sbjct: 181 DSKDVSLEEIMQFIKGP 197


>gi|284154404|gb|ADB78303.1| DNA gyrase [Bacillus licheniformis]
 gi|284154408|gb|ADB78305.1| DNA gyrase [Bacillus licheniformis]
 gi|284154410|gb|ADB78306.1| DNA gyrase [Bacillus licheniformis]
 gi|284154414|gb|ADB78308.1| DNA gyrase [Bacillus licheniformis]
 gi|284154448|gb|ADB78325.1| DNA gyrase [Bacillus licheniformis]
 gi|284154482|gb|ADB78342.1| DNA gyrase [Bacillus licheniformis]
 gi|284154486|gb|ADB78344.1| DNA gyrase [Bacillus licheniformis]
          Length = 189

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|90969024|gb|ABE02582.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  253 bits (647), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 150/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D+ L+ +M+ I+GP
Sbjct: 182 SKDVSLEEIMQFIKGP 197


>gi|90969014|gb|ABE02577.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D  L+ +M+ I+GP
Sbjct: 181 DSKDTSLEEIMQFIKGP 197


>gi|121822733|gb|ABM65605.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 188

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/187 (61%), Positives = 150/187 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALME 218
            ++ LME
Sbjct: 181 SIEGLME 187


>gi|90969022|gb|ABE02581.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D  L+ +M+ I+GP
Sbjct: 181 DSKDASLEEIMQFIKGP 197


>gi|284154388|gb|ADB78295.1| DNA gyrase [Bacillus sp. B-51135]
 gi|284154390|gb|ADB78296.1| DNA gyrase [Bacillus sp. B-51136]
 gi|284154416|gb|ADB78309.1| DNA gyrase [Bacillus sp. B-51150]
 gi|284154420|gb|ADB78311.1| DNA gyrase [Bacillus sp. B-51152]
 gi|284154432|gb|ADB78317.1| DNA gyrase [Bacillus sp. B-51159]
 gi|284154456|gb|ADB78329.1| DNA gyrase [Bacillus sp. B-51175]
 gi|284154460|gb|ADB78331.1| DNA gyrase [Bacillus sp. B-51177]
 gi|284154468|gb|ADB78335.1| DNA gyrase [Bacillus sp. B-51181]
 gi|284154500|gb|ADB78351.1| DNA gyrase [Bacillus sp. B-51199]
 gi|284154512|gb|ADB78357.1| DNA gyrase [Bacillus sp. B-51205]
 gi|284154530|gb|ADB78366.1| DNA gyrase [Bacillus sp. B-51214]
          Length = 189

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|284154462|gb|ADB78332.1| DNA gyrase [Bacillus sp. B-51178]
 gi|284154472|gb|ADB78337.1| DNA gyrase [Bacillus sp. B-51183]
          Length = 189

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|10717005|gb|AAG22003.1|AF282314_1 gyrase subunit A [Yersinia pestis]
          Length = 177

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/177 (64%), Positives = 143/177 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 177


>gi|284154450|gb|ADB78326.1| DNA gyrase [Bacillus sp. B-51172]
 gi|284154458|gb|ADB78330.1| DNA gyrase [Bacillus sp. B-51176]
 gi|284154464|gb|ADB78333.1| DNA gyrase [Bacillus sp. B-51179]
 gi|284154564|gb|ADB78383.1| DNA gyrase [Bacillus sp. B-51232]
          Length = 189

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/189 (61%), Positives = 148/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV   P
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKKP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|90969016|gb|ABE02578.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 149/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D  L+ +M+ I+GP
Sbjct: 182 SKDTSLEEIMQFIKGP 197


>gi|90969018|gb|ABE02579.1| gyrase A [Campylobacter jejuni]
 gi|90969020|gb|ABE02580.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 149/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D  L+ +M+ I+GP
Sbjct: 182 SKDASLEEIMQFIKGP 197


>gi|284154384|gb|ADB78293.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154400|gb|ADB78301.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154406|gb|ADB78304.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154426|gb|ADB78314.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154434|gb|ADB78318.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154438|gb|ADB78320.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154446|gb|ADB78324.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154502|gb|ADB78352.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154508|gb|ADB78355.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154516|gb|ADB78359.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154548|gb|ADB78375.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154556|gb|ADB78379.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154562|gb|ADB78382.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154576|gb|ADB78389.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154618|gb|ADB78410.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154622|gb|ADB78412.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154624|gb|ADB78413.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
          Length = 189

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|117654331|gb|ABK55596.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 200

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 154/200 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKEEILVX 180

Query: 270 EIPYQVNKAAMLEKIAELVR 289
           E+PYQVN A + E  A+LVR
Sbjct: 181 ELPYQVNXARLXEXXADLVR 200


>gi|284154528|gb|ADB78365.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+R NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYRDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154378|gb|ADB78290.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|62719469|gb|AAX93335.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 225

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 165/222 (74%)

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  +L DL KDTVDF PNYDG+ +EPVVL AR PN+L+NG  GIAVGMATNIP 
Sbjct: 1   SRLSKISMEMLRDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPP 60

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+     ++ NPD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R 
Sbjct: 61  HNLTEVISAIHILMKNPDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRS 120

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    ++ I VTE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I
Sbjct: 121 KTDIEEDKNGKQTIAVTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAI 180

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           +++R ASA+V+LN L++ T +Q+ FS NM+A+    P+  +L
Sbjct: 181 DIRRDASAEVVLNNLFKLTLMQTSFSFNMLAIIEGAPKILSL 222


>gi|284154424|gb|ADB78313.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154428|gb|ADB78315.1| DNA gyrase [Bacillus sp. B-51157]
 gi|284154444|gb|ADB78323.1| DNA gyrase [Bacillus sp. B-51169]
 gi|284154470|gb|ADB78336.1| DNA gyrase [Bacillus sp. B-51182]
 gi|284154476|gb|ADB78339.1| DNA gyrase [Bacillus sp. B-51185]
 gi|284154478|gb|ADB78340.1| DNA gyrase [Bacillus sp. B-51186]
 gi|284154506|gb|ADB78354.1| DNA gyrase [Bacillus sp. B-51202]
 gi|284154514|gb|ADB78358.1| DNA gyrase [Bacillus sp. B-51206]
 gi|284154534|gb|ADB78368.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154544|gb|ADB78373.1| DNA gyrase [Bacillus sp. B-51222]
 gi|284154606|gb|ADB78404.1| DNA gyrase [Bacillus sp. B-51256]
 gi|284154608|gb|ADB78405.1| DNA gyrase [Bacillus sp. B-51257]
 gi|284154610|gb|ADB78406.1| DNA gyrase [Bacillus sp. B-51258]
 gi|284154620|gb|ADB78411.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154636|gb|ADB78419.1| DNA gyrase [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|68067066|ref|XP_675504.1| DNA GyrAse a-subunit [Plasmodium berghei strain ANKA]
 gi|56494726|emb|CAH98020.1| DNA GyrAse a-subunit, putative [Plasmodium berghei]
          Length = 653

 Score =  251 bits (640), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 265/476 (55%), Gaps = 53/476 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++   ++KK Y KCARI
Sbjct: 162 VEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCARI 221

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+ +  AA RYTE R+  
Sbjct: 222 VGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYNA-AAMRYTEARISD 280

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++  + +D+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HN+ 
Sbjct: 281 FCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNIV 340

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRG--- 252
           +V++  +  + N  I  D L  II+GPDF TG +I+ +   +++ Y TG+G+IVIR    
Sbjct: 341 DVINASINFLINEKITNDELFNIIKGPDFSTGGIIITKKDTLRDIYNTGKGNIVIRSNIF 400

Query: 253 ----------VSHI---------EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
                     + HI         E  +   +++++  +P  V    ++E I  ++ E++ 
Sbjct: 401 YEYAHNNKTYIHHINELGNLENLECDNKSSKKLIIKNLPPNVKPNKLIENIITVLNERKN 460

Query: 294 VD---IADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSLFSVNMVALNGY 347
                ++ +RDES++   R+V+EL++ +  + I N    L +YTS++  +  N V + GY
Sbjct: 461 EHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLLKYTSMEIDYHCNFVCI-GY 519

Query: 348 KPE--RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           +    +F+L   L+ +   R +  +++   + N    +   ++ L + +    +++ II 
Sbjct: 520 ENSYTQFSLKSFLQLWCENRIK-FIKKNYQIKNNNLQKELNIIDLYLTIQ--KKILDIIS 576

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           F           + ++ N   I++ +     S++ +  D   Y+  ++ + ++ ++
Sbjct: 577 F-----------LHKNQNIEQIQNYL----KSNFKLNEDQIKYILSMKIQKLINIK 617


>gi|284154578|gb|ADB78390.1| DNA gyrase [Bacillus sp. B-51240]
 gi|284154594|gb|ADB78398.1| DNA gyrase [Bacillus sp. B-51249]
 gi|284154596|gb|ADB78399.1| DNA gyrase [Bacillus sp. B-51250]
          Length = 189

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D+ +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154560|gb|ADB78381.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+  NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYHDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154526|gb|ADB78364.1| DNA gyrase [Bacillus sp. B-51212]
          Length = 189

 Score =  250 bits (639), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + I++TS  +E+IVVT
Sbjct: 121 DITISELMEFIPGPDFPTAGKILGRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|284154380|gb|ADB78291.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154396|gb|ADB78299.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154398|gb|ADB78300.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154422|gb|ADB78312.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154430|gb|ADB78316.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154442|gb|ADB78322.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154480|gb|ADB78341.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154494|gb|ADB78348.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154504|gb|ADB78353.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154518|gb|ADB78360.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154520|gb|ADB78361.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154522|gb|ADB78362.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154524|gb|ADB78363.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154532|gb|ADB78367.1| DNA gyrase [Bacillus sp. B-51215]
 gi|284154536|gb|ADB78369.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154538|gb|ADB78370.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154540|gb|ADB78371.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154546|gb|ADB78374.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154550|gb|ADB78376.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154552|gb|ADB78377.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154554|gb|ADB78378.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154558|gb|ADB78380.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154568|gb|ADB78385.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154570|gb|ADB78386.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154572|gb|ADB78387.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154574|gb|ADB78388.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154580|gb|ADB78391.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154582|gb|ADB78392.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154584|gb|ADB78393.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154586|gb|ADB78394.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154588|gb|ADB78395.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154590|gb|ADB78396.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154592|gb|ADB78397.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154598|gb|ADB78400.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154600|gb|ADB78401.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154602|gb|ADB78402.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154604|gb|ADB78403.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154612|gb|ADB78407.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154614|gb|ADB78408.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  250 bits (638), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154498|gb|ADB78350.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNXRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154630|gb|ADB78416.1| DNA gyrase [Bacillus tequilensis]
          Length = 189

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV ++P
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154492|gb|ADB78347.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITVQDLMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|117654333|gb|ABK55597.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 196

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 152/196 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKEXIIVT 180

Query: 270 EIPYQVNKAAMLEKIA 285
           E+P QV KA ++E IA
Sbjct: 181 ELPXQVXKAKLIEXIA 196


>gi|31745487|gb|AAP55217.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 183

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/183 (61%), Positives = 147/183 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGC 202
           +GC
Sbjct: 181 NGC 183


>gi|313621658|gb|EFR92451.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           S4-378]
          Length = 192

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 148/190 (77%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVV 199
           IPTH+LGEV+
Sbjct: 183 IPTHHLGEVI 192


>gi|121822754|gb|ABM65606.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 149/187 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+ D + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ +L K+TV
Sbjct: 61  AVDDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAELEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALME 218
            ++ LME
Sbjct: 181 SIEGLME 187


>gi|297519073|ref|ZP_06937459.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 248

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 169/238 (71%), Gaps = 4/238 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  
Sbjct: 8   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL 
Sbjct: 68  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL 
Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V
Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244


>gi|284154452|gb|ADB78327.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154454|gb|ADB78328.1| DNA gyrase [Bacillus sp. B-51174]
          Length = 189

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G G FGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGKFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|221061465|ref|XP_002262302.1| dna gyrase a-subunit [Plasmodium knowlesi strain H]
 gi|193811452|emb|CAQ42180.1| dna gyrase a-subunit, putative [Plasmodium knowlesi strain H]
          Length = 1173

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 157/527 (29%), Positives = 280/527 (53%), Gaps = 63/527 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I D +  ++L+YA  +IL R + D RDGLK V RRI++ M ++     K  Y KCARI
Sbjct: 176 VEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKKCARI 235

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+ +  AA RYTE ++  
Sbjct: 236 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVEYNA-AAMRYTEAKVSN 294

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++  + +++  N+DG+  EP VLC++ P +L+NG  GIAV + +NIP HNL 
Sbjct: 295 FCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPCHNLV 354

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSH 255
           +V++  ++ + + +I  D L  II+GPDF TG +I+ + + ++N Y TG+G+I IR    
Sbjct: 355 DVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIRSNVF 414

Query: 256 IEKTSGDREQI----------------------VVTEIPYQVNKAAMLEKIAELVREKRI 293
           +E T  D+ Q+                      V+  +P  V    ++E +  ++ EK+ 
Sbjct: 415 LEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILNEKKN 474

Query: 294 VD---IADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVAL--- 344
                +  +RDES+++  R+V+EL++ +  + I   ++ +++YT +Q  +  N V +   
Sbjct: 475 EHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVCIGHQ 534

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           N Y   +F+L   L+ +   R    +++   + N+   +   ++ L I +    +++ II
Sbjct: 535 NSY--TQFSLKSFLQLWCENRIN-FIKKNLTIKNQNLQKELHIIDLYILIQ--KKILEII 589

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
            F           +Q++ N  +IK+                   L++ Q   IL +++ +
Sbjct: 590 SF-----------LQKNQNIEEIKNFF------------KENFKLNDYQIHHILSMKIQK 626

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
           L  +   D       +   +++  D++S+  ++  +I  +L  +K++
Sbjct: 627 LVNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNK 673



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 58/318 (18%), Positives = 134/318 (42%), Gaps = 56/318 (17%)

Query: 589  VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            +L   S    Y   V+ L   S  ++G  +  ++  ++   IT +  F E     N  Y+
Sbjct: 893  LLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKN--ITGMTKFEE-----NKKYL 945

Query: 649  VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  +++G ++      F++  + G   ++L    + +    C   ++ ++ T  G  ++F
Sbjct: 946  IVCSENGKMKVINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCIVGTASGHIIQF 1002

Query: 709  PISAIRVFAGRNSVGVRGISLAKGDQVISM-------------AIVLHADADYDERICYM 755
            P++  ++ + +NS+G + I+L K D+V+ +              I+  +   + + I  +
Sbjct: 1003 PLANFKI-SKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQIIFLSKGGHGKMI-NL 1060

Query: 756  KHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            + +  Q++   G    +    K D+ ++G +++E  +E K  E+++    E         
Sbjct: 1061 EELKVQKKKGKGYKIMKFKRAKRDAVLQGEVAKEEDKENKNHEKYVKDADE--------- 1111

Query: 815  YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
                       G +  D++K             NDND +I+++D   LIR  +  ++  +
Sbjct: 1112 ---------FLGFKLYDMTK------------KNDNDFLIMITDHAILIRKNITLLKKKN 1150

Query: 875  RATKGVVIFSTAKDERVV 892
            R     +    +K  R+V
Sbjct: 1151 RKHSSQIYAKLSKLNRLV 1168


>gi|46326990|gb|AAS88433.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 197

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/196 (58%), Positives = 148/196 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 2   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 181

Query: 205 VIDNPDIDLDALMEII 220
           ++D+ D  L+ +M+ I
Sbjct: 182 LLDSKDASLEEIMQFI 197


>gi|28916594|gb|AAO59530.1| gyrase A [Bacillus subtilis subsp. spizizenii]
          Length = 217

 Score =  248 bits (633), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/216 (54%), Positives = 160/216 (74%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE  + K +  +L D+ KDT+D++  Y+G  ++PVV+ +R+PN+LV G  G A GMA 
Sbjct: 2   RYTEAGMSKISMEILRDITKDTLDYQDTYEGPERDPVVMPSRFPNLLVTGAAGFAEGMAP 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H LG+++DG +A  +NP   +  LME I GPDFPT   I G +GI+ AY TGRGSI
Sbjct: 62  NIPPHQLGKIIDGVLAESENPGHTIRELMEFIPGPDFPTAGQIFGPSGIRKAYETGRGSI 121

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + I++TS  +E+IVVTEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G 
Sbjct: 122 TIRAKAEIDQTSSGKERIVVTEIPYQVNKANLIEKIADLVRDKKIEGITDLRDESDRTGM 181

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           R+VIE++R A+A+VILN LY+ T+LQ+ F +N +AL
Sbjct: 182 RIVIEIRRDANANVILNNLYKQTALQASFGINRLAL 217


>gi|284154402|gb|ADB78302.1| DNA gyrase [Bacillus mojavensis]
 gi|284154474|gb|ADB78338.1| DNA gyrase [Bacillus mojavensis]
 gi|284154496|gb|ADB78349.1| DNA gyrase [Bacillus mojavensis]
 gi|284154510|gb|ADB78356.1| DNA gyrase [Bacillus mojavensis]
 gi|284154566|gb|ADB78384.1| DNA gyrase [Bacillus mojavensis]
 gi|284154634|gb|ADB78418.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|117654323|gb|ABK55592.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 187

 Score =  247 bits (630), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 149/187 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVN 276
           E+PYQVN
Sbjct: 181 ELPYQVN 187


>gi|117654325|gb|ABK55593.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  247 bits (630), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 111/187 (59%), Positives = 149/187 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVN 276
           E+PYQVN
Sbjct: 181 ELPYQVN 187


>gi|313799068|gb|ADR82153.1| topoisomerase IV subunit A [Mycoplasma sp. 1220]
          Length = 511

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 160/540 (29%), Positives = 286/540 (52%), Gaps = 40/540 (7%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +L K+ V+F PN+D S  EP VL + +PN+L+NG  GIA+GMAT +P HN  E+
Sbjct: 1   AELILGELKKNPVNFVPNFDDSELEPAVLPSIFPNLLINGTTGIAIGMATEMPPHNFEEI 60

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG-SIVIRGVSHIE 257
           +D  +A + NP++    L  I++GPDFPTG +I G  GI+ ++ TGR     I+  S   
Sbjct: 61  IDATIAKLQNPNLSFSQLCSIVKGPDFPTGGIIYGTKGIEESFETGRTLKNKIQLFSKFV 120

Query: 258 KTSGDREQIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            TS ++ + + +TEIPY V K+ ++  I  L+ +  +  + +++D+SDR+G ++VI L++
Sbjct: 121 ITSDNKNKYIEITEIPYGVVKSDLVYSIDVLISQNEMDGVLEIKDQSDREGIKIVITLEK 180

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A+   I+  L+  T LQ  +S N + +    P+   L  ++ ++V    ++  +   Y 
Sbjct: 181 DANEKSIMRYLFSKTKLQINYSYNNMVIKNNSPQLLNLNNLITSYVEHISDIKTKTLTYD 240

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           + K + R  +++G        DE++ +IR S   +            A  I+DL+++   
Sbjct: 241 VEKHKLRLEIVLGFLKVTEITDEIIEVIRKSEGSK------------AGVIQDLMNIFG- 287

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        ++ Q  AI ELRL +L+    ++ +NE + L  EI     +L  + +
Sbjct: 288 ------------FTKNQATAIAELRLYKLSKTDYNEFKNEKDYLESEINYINSLLEDKDK 335

Query: 497 LLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
               +   L  +++E  +PRRT+IV  E   D +++D I  E + V +S  GY+KR+   
Sbjct: 336 FTFYLINLLKELRNEFPSPRRTQIVDREYNFDYDEKDLIKEEIINVAISKFGYIKRLSQK 395

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           V  +        S  V++DED++T    V+T  + L F++ G      ++++     +  
Sbjct: 396 VIESN-----DFSTYVLKDEDYLTFYNQVNTMDTFLIFTNFGNYAIIPIYKIEECKWKDN 450

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G  L + + L  GE + +++    + S WN NL+V  AT++G V+R  + DF +++R+ K
Sbjct: 451 GIHLSDFVDLQSGEVVVSVI----EVSDWNSNLFVTIATRNGIVKRTPIKDF-EVSRTVK 505


>gi|117654321|gb|ABK55591.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 198

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 152/197 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +++I+V 
Sbjct: 121 EITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKKRIIVP 180

Query: 270 EIPYQVNKAAMLEKIAE 286
           E+ YQ NKA ++EKI +
Sbjct: 181 ELXYQXNKAXLIEKIPK 197


>gi|237846379|gb|ACR22827.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 202

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/197 (57%), Positives = 148/197 (75%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G 
Sbjct: 6   IENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGA 65

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H
Sbjct: 66  VIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSH 125

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++D
Sbjct: 126 ELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELID 185

Query: 201 GCVAVIDNPDIDLDALM 217
           G + ++D+ D  L+ +M
Sbjct: 186 GLLYLLDSKDASLEEIM 202


>gi|308447920|ref|XP_003087560.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
 gi|308254760|gb|EFO98712.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
          Length = 664

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/186 (58%), Positives = 147/186 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A
Sbjct: 6   IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 66  RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K  H +L DL KDTV++  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  HN+
Sbjct: 126 RKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNMAPHNM 185

Query: 196 GEVVDG 201
            EVV+ 
Sbjct: 186 TEVVNA 191



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 102/415 (24%), Positives = 165/415 (39%), Gaps = 117/415 (28%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  E +V+TVS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S H +VL 
Sbjct: 193 LIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLC 252

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPED----- 639
           F+++G VY+ +V+ +P  S  A+G+ ++N+L L+  E IT I+P       F E      
Sbjct: 253 FTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLDAEETITAILPVIDAPKKFTERLTEFR 312

Query: 640 ----------------ESSWNNLYVVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSR 681
                           +S +  L   FA    N   + LSD +  Q+   G      D  
Sbjct: 313 TFVRANVAQLRENTIIDSHYEALKAAFAELGEN--PDDLSDALRKQLKEIGIELSASDLD 370

Query: 682 DEILS-----VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           DE+++     VE+  +   + + T  G   R  +     F    S G+R I L + D +I
Sbjct: 371 DELIAEFAERVESVRKNFYVFMATASGTVKRVELEQ---FGNVRSNGLRAIELKEEDTLI 427

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +AI      D +++I                                            
Sbjct: 428 GVAIT-----DGEQQI-------------------------------------------- 438

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV------------------------ 832
               +  S +G   R S  D R+  R+ KG+R   V                        
Sbjct: 439 ----MLFSNEGKAIRFSETDARVMGRTAKGVRGMRVALAAAQTEEDVEVDVDSDDEDTAD 494

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           S  N +  +V++  V +  +++  S  G   R PV++     R  KGV+   T++
Sbjct: 495 SNTNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSE 549



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 106/241 (43%), Gaps = 29/241 (12%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           ES   N YV  AT  G V+R +L  F  +  +G  A++L   D ++ V     E  I+L 
Sbjct: 382 ESVRKNFYVFMATASGTVKRVELEQFGNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLF 441

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G+ +RF  +  RV  GR + GVRG           M + L A               
Sbjct: 442 SNEGKAIRFSETDARVM-GRTAKGVRG-----------MRVALAA-----------AQTE 478

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +     +E T+  N + V   +S     E       +L  S  G+GKRT   DF  
Sbjct: 479 EDVEVDVDSDDEDTADSNTNVVSRIVSLVVVPETGE----VLCASANGYGKRTPVDDFPT 534

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG+ A   S+ N  G LV    ++++ +++L+SD GTL+R   +E+    R  +G
Sbjct: 535 KKRGGKGVIAIKTSERN--GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQG 592

Query: 880 V 880
           V
Sbjct: 593 V 593



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N++E     L  +EQ +LTVS+ G+ K     D+    R G+G  AT + + + I  L+ 
Sbjct: 184 NMTEVVNAYLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIV 243

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
               +++  ++  ++ G + R+ V E+  ASR  KG
Sbjct: 244 ---TSNHATVLCFTNVGKVYRLRVFEVPQASRGAKG 276


>gi|284154628|gb|ADB78415.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154616|gb|ADB78409.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 148/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|308198937|dbj|BAJ22603.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 193

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 146/192 (76%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+
Sbjct: 1   NSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H L
Sbjct: 61  GRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHEL 120

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG 
Sbjct: 121 LKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 180

Query: 203 VAVIDNPDIDLD 214
           + ++DN D  L+
Sbjct: 181 LYLLDNKDASLE 192


>gi|308198939|dbj|BAJ22604.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 146/192 (76%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+
Sbjct: 1   NSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H L
Sbjct: 61  GRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHEL 120

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG 
Sbjct: 121 LKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 180

Query: 203 VAVIDNPDIDLD 214
           + ++DN D  L+
Sbjct: 181 LYLLDNKDASLE 192


>gi|163784373|ref|ZP_02179268.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880356|gb|EDP73965.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 633

 Score =  245 bits (625), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 200/714 (28%), Positives = 341/714 (47%), Gaps = 114/714 (15%)

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRT 235
           NG  GIAVG++T+IP HN  EV +    + + P+  ++ L + I+GPDFPTG ++     
Sbjct: 2   NGATGIAVGLSTSIPPHNFTEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILTTSHK 61

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            +   Y  GRGSI ++G + IEK +G+R +IV+ EIPYQVNK  ++++IAELVR  +   
Sbjct: 62  DMVKIYEDGRGSITLKGKARIEKLAGNRHRIVIYEIPYQVNKVELIKRIAELVRTGKEKG 121

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR G R+++ELKR A+ + +L +LY+ T LQ    +N+  L G +P+  +L 
Sbjct: 122 ISDLRDESDRDGIRIIVELKREANPEKVLKKLYQRTQLQKSIPINLTVLVGKQPKTLSLK 181

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  F+  R EV+ +RT Y L KA  R H++ GL  A+ N D V+ I+R S +   A+ 
Sbjct: 182 EVLLEFIKHRIEVITKRTLYELQKAEKRLHIIEGLLKALENADRVIEIVRGSKDSAEAKF 241

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L                               LS+ Q +AIL++RL+R T L  + + N
Sbjct: 242 KLTSE--------------------------FQLSDTQAQAILDMRLSRFTSLESEKLYN 275

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E + L  +I+   +ILSS    + +   E+  + ++    R+T ++E     +DE  +  
Sbjct: 276 EADELRKQIERYREILSSEQEKIKVFINEIDELLEKYGDDRKTIVLE-----KDEGKLTF 330

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE--------DFVTDLFIVSTHT 587
           E+  + ++ L   K +   +   + R  K R    + +E        D++  +  + +  
Sbjct: 331 EENYI-IAVLSNGKIINYKIDNPEDREEKERIFNKVINEITSLILPGDYLVSIQEIKSSQ 389

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            + F ++ G      +W L    P+  GK    +  +++ + + T     + E   + L+
Sbjct: 390 PIAFITNDGRC----IWSLAADLPKGEGK----LKYIDENKIVGTAF---KSEGEEDRLF 438

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  TK+G ++R    D    +++ +I + L   DEI+        + I + T     + 
Sbjct: 439 LL--TKNGIIKRMTFEDIFYKSQNQQI-IPLQEDDEIVMAFADDHPSYIAIYTAKADLLI 495

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + IRV  G  + GV GI                   D DE                G
Sbjct: 496 FERNQIRV-TGAKAKGVEGI-------------------DLDE----------------G 519

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D            V+G         L   E++ILT+++ G  K  +  +F I  R+ KG+
Sbjct: 520 DY-----------VKGGF-------LVNSEEYILTITKNGQCKLVNKEEFPIKKRAQKGL 561

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI--ASRATKG 879
            A  + K +E+    +   VN  D++IL +  G + ++ +++ RI  A R   G
Sbjct: 562 MAVKLQKGDELNICTS---VNIEDEVILSTSGGKVFKMIIDDKRIPVAKRTAMG 612


>gi|145629331|ref|ZP_01785130.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978834|gb|EDJ88557.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 187

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 145/191 (75%), Gaps = 7/191 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIP 191
           GIAVGMATNIP
Sbjct: 174 GIAVGMATNIP 184


>gi|327197938|ref|YP_004306255.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
 gi|306009258|gb|ADM73653.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
          Length = 704

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 200/745 (26%), Positives = 361/745 (48%), Gaps = 76/745 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +TD M   Y TY   V+L RAIPD RDGLKP +RRIL+ M +M      ++ K   ++G 
Sbjct: 12  VTDNM-GQYSTY---VLLSRAIPDFRDGLKPSYRRILWAMQEMKA---TRFTKSFNVAGA 64

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAA 139
           VM  YHPHG+   Y  +  MAQ  S    ++ G+GNFG    +    AERYTE +L    
Sbjct: 65  VM-LYHPHGST--YPTMVGMAQKDSQLNPMVIGKGNFGQHASELAFGAERYTEVKLSAIG 121

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++ D+ K  VDF  NYDG+ + P V   +YP +L     GI VG +++IP+ N  E+ 
Sbjct: 122 LDMMADVKKGGVDFIDNYDGTRRIPEVFPVKYPTILAYAQSGIGVGFSSSIPSFNTTELC 181

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEK 258
           +  +  I++ +       + +  PDF TGA I+     IK+    G GSI  R     +K
Sbjct: 182 EAIIKRIEDNE-------QTLLIPDFGTGAYIINDPDVIKSINENGSGSINQRAKVEFDK 234

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D  +I+V EIPY   K  ++E+I +L +E ++ ++A + D S  +G  +VI  KRG 
Sbjct: 235 ---DSREIIVKEIPYGTTKEKIIERIIKLNKEDKLKEVAKVEDTSGLKGLEIVITAKRGV 291

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLL 377
             + +L +LY+ T +Q+ +S N++ +N    PE+  +  ++  ++ +R +   R     +
Sbjct: 292 DLEQLLEKLYQMTPMQASYSTNLMVINREGLPEKMGVWTLIAKWLDWRTDTYQRMITKDI 351

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
              + +  +L GL     +L+ V++IIR                 N++D        D+ 
Sbjct: 352 QTKQVQLEILYGLENIKDDLEHVIKIIR-----------------NSTD--------DNV 386

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              + S+    LS++Q   +  L+L  LT        + + SL  EI++    +    R+
Sbjct: 387 IQNLSSE--FNLSKLQAERVSGLKLKNLTTTFIKKQLSSIKSLEKEIEQLEWTVEKPQRI 444

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLL-----DMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +I Q++  V  +  TPR++++++  +      +   + +   ++ V V+  GYVK++P
Sbjct: 445 HKLIVQDMKDVIAQFGTPRKSQLIDKSIVAKKAKLSPVNTVEEYNVKVIVTKDGYVKKIP 504

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  R       G + +  ++ D  T          +L F++   VYK+++  L    P+
Sbjct: 505 LTSLR-------GNAEIQFKEGDTPTSEIDTDNGEELLIFTNKQNVYKKQLNDLSDTKPK 557

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G  + +++ L +GE I  I+   +D       YV+   + G V +  +  +    +  
Sbjct: 558 DLGNYIPSLIDLEKGEEIKGIITLSKDTK-----YVLLGFEDGKVAKVNVEAYRTSTKRS 612

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS---L 729
           K+   +  +  I+ + T T + DI+  ++  + +   ++   + + +NS   +GI+   L
Sbjct: 613 KLKNGVVGK-MIVLLTTLTDDVDIMSISESNKAI---VTNTSMISAKNSKATQGITNQKL 668

Query: 730 AKGDQVISMAIVLHADADYDERICY 754
            +G+ +  + +VL  D + D R  Y
Sbjct: 669 KEGESIKKL-LVLQEDEE-DNREYY 691


>gi|330864104|emb|CBX74176.1| hypothetical protein YEW_JA39640 [Yersinia enterocolitica W22703]
          Length = 387

 Score =  244 bits (623), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 224/402 (55%), Gaps = 59/402 (14%)

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQ
Sbjct: 3   VIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQ 62

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++
Sbjct: 63  RRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIV 122

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L   ERIT I+P  E E      ++  AT  G V++  L++F +   +G IA+ L+
Sbjct: 123 NLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEFSRPRSAGIIAVNLN 179

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE++ V+     N+++L + LG+ VRFP S +R   GR + GVRGI+L   D+VIS+ 
Sbjct: 180 EGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVRGINLNGDDRVISLI 238

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I                          GD E                             
Sbjct: 239 IP------------------------RGDGE----------------------------- 245

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V    V   DQI++++D 
Sbjct: 246 ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMITDA 303

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E
Sbjct: 304 GTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPE 345


>gi|224458678|gb|ACN43202.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 269

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 138/295 (46%), Positives = 188/295 (63%), Gaps = 26/295 (8%)

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +
Sbjct: 1   AVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGK 60

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VI
Sbjct: 61  ERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVI 120

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT Y L KA  R
Sbjct: 121 LNNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEAR 180

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL IA+ +LD V+ +IR S   E AR  L+++                       
Sbjct: 181 AHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQ----------------------- 217

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L
Sbjct: 218 ---FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVL 269


>gi|284049781|emb|CBJ15408.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 186

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 109/185 (58%), Positives = 147/185 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++V + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVFVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALME 218
             LME
Sbjct: 181 QELME 185


>gi|308198941|dbj|BAJ22605.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198943|dbj|BAJ22606.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198945|dbj|BAJ22607.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198947|dbj|BAJ22608.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198949|dbj|BAJ22609.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198959|dbj|BAJ22614.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198961|dbj|BAJ22615.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/187 (60%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDLD 214
           N D  L+
Sbjct: 181 NKDASLE 187


>gi|308198953|dbj|BAJ22611.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 145/192 (75%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+
Sbjct: 1   NSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H L
Sbjct: 61  GRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHEL 120

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG 
Sbjct: 121 LKDIDKDTVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 180

Query: 203 VAVIDNPDIDLD 214
           + ++D+ D  L+
Sbjct: 181 LYLLDSKDASLE 192


>gi|308072531|dbj|BAJ21888.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 186

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/186 (60%), Positives = 141/186 (75%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPH
Sbjct: 1   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ K
Sbjct: 61  GDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN
Sbjct: 121 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 180

Query: 209 PDIDLD 214
            D  L+
Sbjct: 181 KDASLE 186


>gi|308198957|dbj|BAJ22613.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDLD 214
           + D  L+
Sbjct: 181 SKDTSLE 187


>gi|308198931|dbj|BAJ22600.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDLD 214
           + D  L+
Sbjct: 181 SKDASLE 187


>gi|31745485|gb|AAP55216.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 142/176 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|308198935|dbj|BAJ22602.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198951|dbj|BAJ22610.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198955|dbj|BAJ22612.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLD 214
           + D  L+
Sbjct: 182 SKDASLE 188


>gi|308198933|dbj|BAJ22601.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 190

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 141/186 (75%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ K
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 209 PDIDLD 214
            D  L+
Sbjct: 183 KDASLE 188


>gi|126797800|gb|ABO27419.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score =  240 bits (612), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 117/175 (66%), Positives = 144/175 (82%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIRVIRGAPDPQSAREELMTRRWPAADVESLIQLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I  ELN +G+EIK+ LDILSSR R+  I+K+EL++V+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIDEELNQIGVEIKDYLDILSSRVRIQTIVKEELIAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 121 PRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|31745499|gb|AAP55223.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 141/176 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|126797798|gb|ABO27418.1| DNA gyrase subunit A [Rhizobium tropici]
          Length = 176

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 144/176 (81%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIRVIRHAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K+EL++V+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176


>gi|7264704|gb|AAF44319.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  239 bits (610), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 132/164 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|312600999|gb|ADQ90254.1| Topoisomerase IV subunit A [Mycoplasma hyopneumoniae 168]
          Length = 749

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 175/626 (27%), Positives = 316/626 (50%), Gaps = 52/626 (8%)

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L+E  GN GS+D DPPAA RYTE RL + +  LL+ + K+ V F PN+D S +EP +L A
Sbjct: 5   LVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISKNVVSFYPNFDDSEKEPTILPA 64

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
            +PN+L+NG  GIA G AT IP HNLGEV+D  + +I NP I ++ +  II GPDFPTG 
Sbjct: 65  IFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGG 124

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++ G++GI +A+ TG+G I I     I + +G +  I +T IP+ ++K++++E+I ++  
Sbjct: 125 IVYGKSGIFDAFKTGKGKIKISSDYKIFEKNG-QNVIEITSIPFGISKSSLIEEIDDIRF 183

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           + +I  I ++ D+SD+ G  ++IEL++  + D+I+N L + T LQ  +S N VA+    P
Sbjct: 184 DAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSP 243

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL-DEVVRIIRFSP 408
           +  ++  ++  ++    ++ +    + L K + R  ++ G  + VA++ DEV+++IR S 
Sbjct: 244 KLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIITGF-LKVADITDEVIKVIRASD 302

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           N +               + DLI   +              S+ Q  AI  +RL RL+ +
Sbjct: 303 NSKVGV------------VSDLIKFFN-------------FSQTQAEAIASMRLYRLSKI 337

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT-RIVEGLLDM 527
            +     E  +L   I     ++ ++      +   L   K     PR+T  I   +   
Sbjct: 338 EQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIK 397

Query: 528 EDEDCIVREDMV-VTVSHLGYVKR------VPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            ++D +V+++     ++  G  K+      +P  + + Q   G           DF    
Sbjct: 398 INKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPNG-----------DFFIFQ 446

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            I++     +F ++ G +    V ++P  + +     L   L +   ++I ++      E
Sbjct: 447 GIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFE 506

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLT 699
           SS    +++F +K    +R  L   ++I +   +   +    DE++SV    +  +I+L 
Sbjct: 507 SSQ---FLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLI 563

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVR 725
           T   + ++  IS I ++  RNS G++
Sbjct: 564 TTQNRALKMSISEIPIYT-RNSTGIK 588


>gi|126797802|gb|ABO27420.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 143/176 (81%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+ +IR +P+P++AR ELM R WNA+D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVILVIRQAPDPQSAREELMTRRWNAADVESLIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I  ELN +G EIK+ LDILSSR+R+  I+K+EL +V+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIDEELNQIGAEIKDYLDILSSRARIQTIVKEELSAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176


>gi|28372382|gb|AAO38030.1| GyrA [Campylobacter jejuni]
          Length = 181

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/181 (60%), Positives = 139/181 (76%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+
Sbjct: 1   NSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H L
Sbjct: 61  GRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHEL 120

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG 
Sbjct: 121 LKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 180

Query: 203 V 203
           +
Sbjct: 181 L 181


>gi|308072529|dbj|BAJ21887.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 138/181 (76%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG
Sbjct: 1   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KD
Sbjct: 61  DTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN 
Sbjct: 121 TVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNK 180

Query: 210 D 210
           D
Sbjct: 181 D 181


>gi|224458696|gb|ACN43211.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 191/295 (64%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL+ +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELMEIKERFNDERRTEIV 269


>gi|7264706|gb|AAF44320.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  238 bits (607), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|295394180|gb|ADG03701.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 175

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 140/175 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEV 175


>gi|19702310|gb|AAL93251.1|AF487466_1 DNA Gyrase A [Yersinia pestis]
 gi|7264710|gb|AAF44322.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  238 bits (606), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/164 (66%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDRAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|308072562|dbj|BAJ21898.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072564|dbj|BAJ21899.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072570|dbj|BAJ21902.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072572|dbj|BAJ21903.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072580|dbj|BAJ21907.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198985|dbj|BAJ22627.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198991|dbj|BAJ22630.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199005|dbj|BAJ22637.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199009|dbj|BAJ22639.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199011|dbj|BAJ22640.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199015|dbj|BAJ22642.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199037|dbj|BAJ22653.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199043|dbj|BAJ22656.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199045|dbj|BAJ22657.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199051|dbj|BAJ22660.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  238 bits (606), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|224458690|gb|ACN43208.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458694|gb|ACN43210.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 135/295 (45%), Positives = 190/295 (64%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 269


>gi|308199039|dbj|BAJ22654.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199055|dbj|BAJ22662.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|308072560|dbj|BAJ21897.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 2   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 62  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 122 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 181

Query: 212 DL 213
            L
Sbjct: 182 SL 183


>gi|215480341|gb|ACJ67515.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 190/295 (64%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKKCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 269


>gi|308198965|dbj|BAJ22617.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 110/185 (59%), Positives = 140/185 (75%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG
Sbjct: 4   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 63

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KD
Sbjct: 64  DIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 123

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ 
Sbjct: 124 TVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSK 183

Query: 210 DIDLD 214
           D  L+
Sbjct: 184 DASLE 188


>gi|215480321|gb|ACJ67505.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480333|gb|ACJ67511.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 190/295 (64%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 269


>gi|325136790|gb|EGC59389.1| DNA gyrase, A subunit [Neisseria meningitidis M0579]
          Length = 517

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 165/521 (31%), Positives = 269/521 (51%), Gaps = 40/521 (7%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-----DL----IDDSSYTIG-SDGTM 447
           DE++++I+ SPN   A+ +L+ R W +S +++++     DL     +  +  IG  +   
Sbjct: 1   DEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGY 60

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
           YLSE+Q  AIL + L  LTGL +++I     +L  +I + +DILS   R+  II+ EL  
Sbjct: 61  YLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEE 120

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +K      RR+ I     D+ DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+ 
Sbjct: 121 IKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQ 180

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
               +DEDF+  LF+ +TH  ++ F++LG  +  KV++LP G   +RG+ + N++ L +G
Sbjct: 181 AAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEG 240

Query: 628 ERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
           E+++ I+    FPED+      YV FAT  G V++ +LS F  +   G  A+ L   D +
Sbjct: 241 EKVSAILAVREFPEDQ------YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYL 294

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---V 741
           +        +DI+L + LG+ +RF           N    +  +    D  I   I   +
Sbjct: 295 VGAAQTGGADDIMLFSNLGKAIRF-----------NEYWEKSGNDEAEDADIETEISDGI 343

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFI 800
               AD +  +   KH   +             L  D  +   I+     +E  L+   +
Sbjct: 344 EDETADSENALPSGKH-GVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---V 399

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +  G+GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  G
Sbjct: 400 LTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGG 457

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            LIR  V +IR   RA  GV + +  + E +VS+ER+ E E
Sbjct: 458 VLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 498



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 108/248 (43%), Gaps = 44/248 (17%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+V LS ++  R   +G   + +++ D++           ++ FS+LG  
Sbjct: 258 VFFATAQGLVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 315

Query: 599 YK-EKVWR------------------------------LPIGS----PQARGKALINILS 623
            +  + W                               LP G     P  RG   +  + 
Sbjct: 316 IRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSGGLRGMR 375

Query: 624 LNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS 680
           L    +I +++ F PE E S   L V+ AT +G  +R  ++D+ + N+ G+  IA+    
Sbjct: 376 LPADGKIVSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGE 433

Query: 681 RDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           R+  L   T   E +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++S+ 
Sbjct: 434 RNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLE 492

Query: 740 IVLHADAD 747
            V   +++
Sbjct: 493 RVAEDESE 500



 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 399 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 457

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + + KV ++       R  A + +++L++GE + ++    EDES  ++  V+
Sbjct: 458 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 507


>gi|295092033|emb|CBK78140.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 257

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/217 (52%), Positives = 153/217 (70%), Gaps = 2/217 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K A
Sbjct: 5   IIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE RL
Sbjct: 65  RIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEARL 124

Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +K A    L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 125 EKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           LGEVVD   A IDNP++  + L+  + GPDFPTG +I
Sbjct: 184 LGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGII 220


>gi|215480285|gb|ACJ67487.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480289|gb|ACJ67489.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480301|gb|ACJ67495.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480303|gb|ACJ67496.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480307|gb|ACJ67498.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480309|gb|ACJ67499.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480345|gb|ACJ67517.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480357|gb|ACJ67523.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480359|gb|ACJ67524.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  237 bits (604), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 134/295 (45%), Positives = 190/295 (64%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 269


>gi|308072578|dbj|BAJ21906.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 137/179 (76%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 179


>gi|308198979|dbj|BAJ22624.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 137/179 (76%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 179


>gi|308198989|dbj|BAJ22629.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199007|dbj|BAJ22638.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199059|dbj|BAJ22664.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/179 (60%), Positives = 137/179 (76%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 179


>gi|7264708|gb|AAF44321.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPH ++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHDDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|308072574|dbj|BAJ21904.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072576|dbj|BAJ21905.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198973|dbj|BAJ22621.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198987|dbj|BAJ22628.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198993|dbj|BAJ22631.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198995|dbj|BAJ22632.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198997|dbj|BAJ22633.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198999|dbj|BAJ22634.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199013|dbj|BAJ22641.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199047|dbj|BAJ22658.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDT 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|239737041|gb|ACS13100.1| GyrA [Pseudomonas putida]
          Length = 163

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 107/163 (65%), Positives = 131/163 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           D+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 DWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 163


>gi|215480319|gb|ACJ67504.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480331|gb|ACJ67510.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480335|gb|ACJ67512.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 277

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 4   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 63

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 64  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 123

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 124 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 183

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 184 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 217

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 218 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 268


>gi|217069485|gb|ACJ83231.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 202

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/203 (55%), Positives = 153/203 (75%), Gaps = 1/203 (0%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 61  PPHSLNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKV 120

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RV
Sbjct: 121 RAKTHIEKRA-NKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRV 179

Query: 311 VIELKRGASADVILNQLYRYTSL 333
           VIELKR A ++++LN L++ T++
Sbjct: 180 VIELKRDAMSEIVLNNLFKSTTM 202


>gi|308072558|dbj|BAJ21896.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072566|dbj|BAJ21900.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072568|dbj|BAJ21901.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198969|dbj|BAJ22619.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198977|dbj|BAJ22623.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198981|dbj|BAJ22625.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198983|dbj|BAJ22626.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199001|dbj|BAJ22635.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199017|dbj|BAJ22643.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199021|dbj|BAJ22645.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199025|dbj|BAJ22647.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|295394162|gb|ADG03692.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 175

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/175 (60%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD PAA+RYTE R+ K +  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLIMDNPDVTTRDLMEV 175


>gi|308199027|dbj|BAJ22648.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199033|dbj|BAJ22651.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199049|dbj|BAJ22659.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|295394152|gb|ADG03687.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 175

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD PAA+RYTE R+ K +  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTHDLMEV 175


>gi|7264712|gb|AAF44323.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPH ++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHCDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|308199003|dbj|BAJ22636.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199019|dbj|BAJ22644.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|215480329|gb|ACJ67509.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 3   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 62

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 63  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 122

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 123 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 182

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 183 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 216

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 217 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 267


>gi|215480323|gb|ACJ67506.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480325|gb|ACJ67507.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480337|gb|ACJ67513.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 4   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 63

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 64  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 123

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 124 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 183

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 184 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 217

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 218 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 268


>gi|215480291|gb|ACJ67490.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480347|gb|ACJ67518.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480349|gb|ACJ67519.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480353|gb|ACJ67521.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 3   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 62

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 63  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 122

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 123 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 182

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 183 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 216

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 217 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 267


>gi|215480283|gb|ACJ67486.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480287|gb|ACJ67488.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480293|gb|ACJ67491.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480295|gb|ACJ67492.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480297|gb|ACJ67493.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480299|gb|ACJ67494.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480305|gb|ACJ67497.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480343|gb|ACJ67516.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480351|gb|ACJ67520.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480355|gb|ACJ67522.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 4   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 63

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 64  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 123

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 124 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 183

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 184 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 217

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 218 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 268


>gi|215480339|gb|ACJ67514.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 3   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 62

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 63  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 122

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 123 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 182

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 183 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 216

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 217 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 267


>gi|308199053|dbj|BAJ22661.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|224458676|gb|ACN43201.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 135/295 (45%), Positives = 189/295 (64%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 269


>gi|295394166|gb|ADG03694.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 175

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 108/175 (61%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYDGS +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIAMEMLRDINKNTVDFADNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTRDLMEV 175


>gi|312977113|ref|ZP_07788862.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
 gi|310896441|gb|EFQ45506.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
          Length = 415

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 243/459 (52%), Gaps = 60/459 (13%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L + Q++AIL++RL RLTGL RD +  E   L  +I +  DILS   R+  II  ELL +
Sbjct: 7   LDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDI 66

Query: 509 KDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +      RRT I    ++ +EDED I ++++++TV+H GY+KR+P+  ++ Q RGGKG  
Sbjct: 67  QKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIK 126

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
           G+ ++D DF+  L   STH  +LFF++ G VY +K + +P     A+G  ++N+L L +G
Sbjct: 127 GMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLLQLEKG 186

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E++ T++  PE     ++ Y+ F TK G V+R  +S+F  I  SG IA+ L   DE+ +V
Sbjct: 187 EKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELSNV 243

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
            T   + +IL+ T LG  V F    +R   GR + GVRGI+L + D V+   I L AD  
Sbjct: 244 LTTDGKQNILIGTHLGYAVTFNEGDVRAM-GRTAAGVRGINLREHDYVVGSGI-LGAD-- 299

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            D+ +                                ISE+                  G
Sbjct: 300 -DQVLV-------------------------------ISEK------------------G 309

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT + ++ +  R GKGI+  ++++ N  G L  V  +N N+ +++++  G +IR  +
Sbjct: 310 YGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGVTIINSNNDVMVITTDGIMIRFRI 367

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +++    R+T GV +   + D +V S+  +   E  D+ 
Sbjct: 368 DDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQDQT 406


>gi|308199029|dbj|BAJ22649.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199031|dbj|BAJ22650.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/179 (60%), Positives = 137/179 (76%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKD 179


>gi|224458670|gb|ACN43198.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/286 (46%), Positives = 182/286 (63%), Gaps = 26/286 (9%)

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 1   IQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELP 60

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 61  YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 120

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT Y L KA  RAH+L GL I
Sbjct: 121 LQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARAHILEGLRI 180

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ +LD V+ +IR S   E AR  L+++                            L+E 
Sbjct: 181 ALDHLDAVISLIRSSQTAEIARTGLIEQ--------------------------FSLTEK 214

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           Q +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L
Sbjct: 215 QAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVL 260


>gi|215480317|gb|ACJ67503.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/291 (45%), Positives = 189/291 (64%), Gaps = 26/291 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 2   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 61

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T++Q+ F +N++AL   +P+
Sbjct: 62  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAVQTSFGINLLALVDGQPK 121

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 122 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 181

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 182 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 215

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 216 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 266


>gi|224039159|gb|ACN38390.1| DNA gyrase subunit A [Achromobacter denitrificans]
          Length = 163

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 134/163 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQ 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y  + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K AH LL D+ ++TV
Sbjct: 61  SVYGTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           DF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 DFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHN 163


>gi|28916614|gb|AAO59540.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 197

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 157/197 (79%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIA GMATNIP H LGEV++G +AV +
Sbjct: 1   KDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEVIEGVLAVSE 60

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP+I    LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+
Sbjct: 61  NPEITNQELMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERII 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN L
Sbjct: 121 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNL 180

Query: 328 YRYTSLQSLFSVNMVAL 344
           Y+ T+LQ+ F +N++AL
Sbjct: 181 YKQTALQTSFGINLLAL 197


>gi|153824230|ref|ZP_01976897.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|126518247|gb|EAZ75472.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 411

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 228/444 (51%), Gaps = 90/444 (20%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+S
Sbjct: 1   IAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLS 60

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 61  HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 120

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660
           ++LP+ S  ARGK ++N+L L + ERIT I+P   F ED+      ++  AT  G V++ 
Sbjct: 121 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKT 174

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------ 708
            L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF            
Sbjct: 175 SLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN 234

Query: 709 --PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
             P+             +R   GR + GVRG+ LA GDQV+S+ IV   + D        
Sbjct: 235 GQPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD-------- 284

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                       +LTV+E G+GKRTS  
Sbjct: 285 --------------------------------------------VLTVTENGYGKRTSLS 300

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R
Sbjct: 301 EYPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGR 358

Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899
            T+GV +  T++ E VV ++RI E
Sbjct: 359 NTQGVTLIRTSEGESVVGLQRIDE 382


>gi|215480327|gb|ACJ67508.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 132/290 (45%), Positives = 188/290 (64%), Gaps = 26/290 (8%)

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           LGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K
Sbjct: 3   LGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDK 62

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+ 
Sbjct: 63  KIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKV 122

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E
Sbjct: 123 LTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAE 182

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  L+++                            L+E Q +AIL++RL RLTGL R+
Sbjct: 183 IARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLERE 216

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 217 KIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 266


>gi|224458692|gb|ACN43209.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 191/300 (63%), Gaps = 26/300 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR 
Sbjct: 121 GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 GLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLE 274


>gi|259014742|gb|ACV88661.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 173

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 135/173 (78%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD
Sbjct: 1   DVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  FSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           P VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +D L
Sbjct: 121 PSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDL 173


>gi|308198975|dbj|BAJ22622.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  234 bits (596), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+AL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYNALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|122939091|gb|ABM69127.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|126797790|gb|ABO27414.1| DNA gyrase subunit A [Rhizobium indigoferae]
          Length = 176

 Score =  233 bits (595), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 142/176 (80%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIRVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDLTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K ELL+V+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176


>gi|89515137|gb|ABD75398.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515139|gb|ABD75399.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515145|gb|ABD75402.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515147|gb|ABD75403.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515149|gb|ABD75404.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 141/176 (80%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I +DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINADGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGMA 176


>gi|284154632|gb|ADB78417.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 143/187 (76%)

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+ ++  RMAQD++  + L++G GNFG VDGD  AA RY E R+ K A  +L D+ KDT+
Sbjct: 3   AVXESXVRMAQDFNYVICLVDGHGNFGXVDGDSAAAMRYXEARMXKIAMEILRDITKDTI 62

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI
Sbjct: 63  DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDI 122

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 123 TIQELMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTEL 182

Query: 272 PYQVNKA 278
           PYQVNKA
Sbjct: 183 PYQVNKA 189


>gi|284154626|gb|ADB78414.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 143/189 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ A  +GRGSI  R  + IE TS  +E+I VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRXAXESGRGSITXRAKAEIEXTSSGKERIXVT 180

Query: 270 EIPYQVNKA 278
           E P  V KA
Sbjct: 181 EFPXXVXKA 189


>gi|323651011|ref|YP_004243654.1| ATP-hydrolyzing DNA topoisomerase subunit A [Bacillus subtilis
           subsp. natto]
 gi|323461651|dbj|BAJ77067.1| subunit A of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 664

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 226/401 (56%), Gaps = 21/401 (5%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+ +I   ++N+ + Y+  ++L RA+PDLRDGLKPVHRRIL+ M    ++   K+ K A 
Sbjct: 4   TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP--PAAERYTECR 134
           ++G+VM K HPHG++  Y ++  M Q     + ++EG+GNFG        PAA+RY+E +
Sbjct: 61  VAGQVM-KLHPHGSS--YGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVK 117

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + +  ++ +  K+ VDF  NYDG+ + P VL  ++P++L     GI VG +++IP+ N
Sbjct: 118 LSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFN 177

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGV 253
           L E+ +  V  I+  +       + +  PDF TG +I+    + +     GRG++ IRG 
Sbjct: 178 LKELTEAIVKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK 230

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I K      +I +TEIPY   + A++EKI EL +  ++ ++ D++D +  +G  + I 
Sbjct: 231 AEIVKN-----EIHITEIPYSTTRQAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITIT 285

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            +R    +V+L +LY++T LQS FS NM  L    P+   +   +  ++ +R   + R  
Sbjct: 286 ARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRGL 345

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            + +     + H+L GL   + ++DE + IIR S   +  R
Sbjct: 346 SHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSRDQIER 386


>gi|126797792|gb|ABO27415.1| DNA gyrase subunit A [Rhizobium gallicum]
          Length = 176

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/176 (66%), Positives = 140/176 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K EL SV+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIGDELNKIGDEIKDYLDILSSRVRIQTIVKDELTSVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176


>gi|89515135|gb|ABD75397.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 140/176 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|89515141|gb|ABD75400.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515143|gb|ABD75401.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 141/176 (80%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I +DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINADGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD++ +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEVGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGMA 176


>gi|224458680|gb|ACN43203.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458684|gb|ACN43205.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/295 (44%), Positives = 188/295 (63%), Gaps = 26/295 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 GLEREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 269


>gi|149393056|gb|ABR26590.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393058|gb|ABR26591.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393060|gb|ABR26592.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393062|gb|ABR26593.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
          Length = 176

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 140/176 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|295394170|gb|ADG03696.1| DNA gyrase subunit A [Streptococcus parasanguinis]
          Length = 175

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFADNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLMMDNPEVTTRELMEV 175


>gi|153840091|ref|ZP_01992758.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746311|gb|EDM57376.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 286

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/266 (44%), Positives = 174/266 (65%), Gaps = 10/266 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-----RTGIKNA 240
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+      +  I  A
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISLKRKLKRSIATA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQI 266
            A  R   V  G+   + +S  R  I
Sbjct: 241 VAASR--CVQYGIKKGQTSSSRRFHI 264


>gi|295394172|gb|ADG03697.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|295394174|gb|ADG03698.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 175

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|265679096|gb|ACY76267.1| DNA gyrase A [Mycobacterium chelonae]
          Length = 183

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 133/183 (72%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFSPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 VDG 201
            + 
Sbjct: 181 AEA 183


>gi|89515129|gb|ABD75394.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515131|gb|ABD75395.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515133|gb|ABD75396.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 140/176 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINVDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|221316455|ref|ZP_03598260.1| DNA gyrase/topoisomerase IV, subunit A [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 664

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 224/394 (56%), Gaps = 21/394 (5%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+ +I   ++N+ + Y+  ++L RA+PDLRDGLKPVHRRIL+ M    ++   K+ K A 
Sbjct: 4   TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP--PAAERYTECR 134
           ++G+VM K HPHG++  Y ++  M Q     + ++EG+GNFG        PAA+RY+E +
Sbjct: 61  VAGQVM-KLHPHGSS--YGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVK 117

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + +  ++ +  K+ VDF  NYDG+ + P VL  ++P++L     GI VG +++IP+ N
Sbjct: 118 LSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFN 177

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGV 253
           L E+ +  V  I+  +       + +  PDF TG +I+    + +     GRG++ IRG 
Sbjct: 178 LKELTEAIVKYIETGE-------KTVLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK 230

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I K      +I +TEIPY   + A++EKI EL +  ++ ++ D++D +  +G  + I 
Sbjct: 231 AEIVKN-----EIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITIT 285

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            +R    +V+L +LY++T LQS FS NM  L    P+   +   +  ++ +R   + R  
Sbjct: 286 ARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRGL 345

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            + +     + H+L GL   + ++DE + IIR S
Sbjct: 346 SHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRS 379


>gi|227554720|ref|ZP_03984767.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227176148|gb|EEI57120.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 318

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 122/320 (38%), Positives = 199/320 (62%), Gaps = 26/320 (8%)

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++R  + IE 
Sbjct: 1   IDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVILRAKTKIEP 60

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++V+ELK+  
Sbjct: 61  LKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVVELKKDV 120

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++ R ++ L+
Sbjct: 121 NAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVIINRCQFELD 180

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR R H++ GL  A++ LD+V+  IR S + + A++                +L+ D +
Sbjct: 181 KARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK----------------NLVSDYA 224

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +T          E Q  AI+ L+L RLT     D++ E  +L  +I E L+IL++   L 
Sbjct: 225 FT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELF 274

Query: 499 GIIKQELLSVKDELDTPRRT 518
            ++K+EL  VK +   PR T
Sbjct: 275 SVMKKELREVKKQYGNPRLT 294


>gi|265679090|gb|ACY76264.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679092|gb|ACY76265.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679094|gb|ACY76266.1| DNA gyrase A [Mycobacterium bolletii]
          Length = 183

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 133/183 (72%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 VDG 201
            + 
Sbjct: 181 AEA 183


>gi|295394164|gb|ADG03693.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|295394168|gb|ADG03695.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
          Length = 175

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394160|gb|ADG03691.1| DNA gyrase subunit A [Streptococcus infantis]
          Length = 175

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394154|gb|ADG03688.1| DNA gyrase subunit A [Streptococcus australis]
          Length = 175

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFTDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
            VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNPD+    LME+
Sbjct: 121 NVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLMMDNPDVTTRELMEV 175


>gi|313757053|gb|ADR78334.1| gyrase [Ferroplasma acidiphilum]
          Length = 176

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/170 (62%), Positives = 133/170 (78%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV  +K Y K ARI GE
Sbjct: 5   IEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIGE 64

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            MGKYHPHG+++IY+ALARMAQD+SLR  LI+GQGNFGS+DGD PAA RYTE RL K A 
Sbjct: 65  TMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMAE 124

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            ++ D+ K+TV F PN+DGS  EPV   +R P +L+NG  GIAVGMATN+
Sbjct: 125 EMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNM 174


>gi|295394178|gb|ADG03700.1| DNA gyrase subunit A [Streptococcus sanguinis SK1]
          Length = 175

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/175 (61%), Positives = 136/175 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV   K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPEKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVD+  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           VVL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD     +ME+
Sbjct: 121 VVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDATTRDIMEV 175


>gi|224458674|gb|ACN43200.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 269

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/295 (45%), Positives = 189/295 (64%), Gaps = 27/295 (9%)

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 1   AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 60

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+
Sbjct: 61  RDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLE 120

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L++
Sbjct: 121 HYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIE 180

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            L+E Q +AIL++RL RLTGL R+ I  E  S
Sbjct: 181 Q--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 214

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCI 533
           L   I E  DIL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I
Sbjct: 215 LVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLI 269


>gi|89515119|gb|ABD75389.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797752|gb|ABO27395.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797754|gb|ABO27396.1| DNA gyrase subunit A [Sinorhizobium sp. CFN_EC1002]
          Length = 176

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 142/176 (80%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DE++++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEIIKLIRHAPDPQTAREQLMERRWPAHDVESLIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL++++DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKDELVAIRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRR+ I+EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRSEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|301014718|gb|ADK47158.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 166

 Score =  231 bits (589), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 132/166 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  IVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           YDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC
Sbjct: 121 YDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 166


>gi|217069477|gb|ACJ83227.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 199

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/199 (55%), Positives = 148/199 (74%), Gaps = 1/199 (0%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E+ DG + +IDN +  L+ +M  I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 61  PPHSLNELTDGLLYLIDNKNASLEEIMHFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKV 120

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK + +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RV
Sbjct: 121 RAKTHIEKRA-NKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRV 179

Query: 311 VIELKRGASADVILNQLYR 329
           VIELKR A ++++LN L++
Sbjct: 180 VIELKRDAMSEIVLNNLFK 198


>gi|126797806|gb|ABO27422.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 176

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 141/175 (80%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W + D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRSAPDPQTAREQLMERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRL RLT LGRD+I +ELN++G EIK+ LDILSSR+R+  I+K EL +V+DE  T
Sbjct: 61  RAILELRLQRLTALGRDEIADELNTIGDEIKDYLDILSSRARIQQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT + EG  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+
Sbjct: 121 PRRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175


>gi|295394176|gb|ADG03699.1| DNA gyrase subunit A [Streptococcus salivarius]
          Length = 175

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPV RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVQRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L DL K+TVDF+ NYDGS +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDLNKNTVDFQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R PN+LVNG  GIAVGMATNIP HNL E +D    ++DNP++    LME+
Sbjct: 121 IVLPSRIPNLLVNGATGIAVGMATNIPPHNLAETIDAVKLMMDNPEVTTRELMEV 175


>gi|217069473|gb|ACJ83225.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 200

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 151/201 (75%), Gaps = 1/201 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 1   EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 61  PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIEK + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVV
Sbjct: 121 AKTHIEKRA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 179

Query: 312 IELKRGASADVILNQLYRYTS 332
           IELKR A ++++LN L++ T+
Sbjct: 180 IELKRDAMSEIVLNNLFKSTT 200


>gi|217069481|gb|ACJ83229.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 201

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 149/196 (76%), Gaps = 1/196 (0%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 5   AEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNEL 64

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK
Sbjct: 65  IDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKVRAKTHIEK 124

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 125 RV-NKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRVVIELKRDA 183

Query: 319 SADVILNQLYRYTSLQ 334
            ++++LN L++ T+++
Sbjct: 184 MSEIVLNNLFKSTTME 199


>gi|21327937|dbj|BAC00774.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 177

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 136/177 (76%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+  IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLPIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD+S R  L++GQGNFGS+DGD  AA RYTE R+ K    LL D+ KDT+DF  NYDG
Sbjct: 61  MAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           + +EP VL AR+PN+L NG  GIAVGMATNIP HNL E+++G +++  NPDI +  L
Sbjct: 121 NEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL 177


>gi|262477436|gb|ACY68195.1| DNA gyrase subunit A [Escherichia coli]
          Length = 171

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 135/171 (78%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMVDLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 171


>gi|126797746|gb|ABO27392.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL++V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMKIVKDELIAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|265679098|gb|ACY76268.1| DNA gyrase A [Mycobacterium immunogenum]
          Length = 181

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/180 (58%), Positives = 132/180 (73%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180


>gi|29602635|gb|AAO85704.1| GyrA [Campylobacter jejuni]
          Length = 178

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 132/173 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 6   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 65

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 66  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 125

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 126 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIP 178


>gi|89515125|gb|ABD75392.1| DNA gyrase subunit A [Sinorhizobium medicae]
 gi|126797762|gb|ABO27400.1| DNA gyrase subunit A [Sinorhizobium medicae]
          Length = 176

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 114/176 (64%), Positives = 138/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL SV+DE  T
Sbjct: 61  RAILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|89515115|gb|ABD75387.1| DNA gyrase subunit A [Sinorhizobium arboris LMG 14919]
 gi|126797744|gb|ABO27391.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVEALIRLIDDPRHRINDDATYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMKIVKDELTAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|213864879|ref|ZP_03386998.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 178

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/171 (60%), Positives = 137/171 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGM
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178


>gi|295394156|gb|ADG03689.1| DNA gyrase subunit A [Streptococcus cristatus]
          Length = 175

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVD+  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP+     +ME+
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPEATTRDIMEV 175


>gi|28916606|gb|AAO59536.1| gyrase A [Bacillus mojavensis]
          Length = 197

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 154/197 (78%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDT+D++  Y+G  +EPVV+ +R+PN+LVNG  GIA GMATNIP H LGE++DG +A  +
Sbjct: 1   KDTIDYQDTYEGPEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEIIDGVLAGGE 60

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           N DI +  +M  I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+
Sbjct: 61  NKDITIPEVMAFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIL 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN L
Sbjct: 121 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNHL 180

Query: 328 YRYTSLQSLFSVNMVAL 344
           Y+ T+LQ+ F +NM+AL
Sbjct: 181 YKQTALQTSFGINMLAL 197


>gi|113126858|gb|ABI30277.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243299|gb|ABS71822.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243303|gb|ABS71824.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243305|gb|ABS71825.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/165 (63%), Positives = 132/165 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|89515111|gb|ABD75385.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
 gi|126797784|gb|ABO27411.1| DNA gyrase subunit A [Sinorhizobium sp. GRX8]
          Length = 176

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 139/175 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|126797808|gb|ABO27423.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 176

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 139/175 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W + D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRTAPDPQTAREQLMERRWPSHDVAPLIKLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R+  I+K EL++V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIADELNKIGAEIVDFLDILSSRARIQQIVKDELIAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT + EG  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+
Sbjct: 121 PRRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175


>gi|70940757|ref|XP_740752.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518684|emb|CAH79846.1| hypothetical protein PC000560.03.0 [Plasmodium chabaudi chabaudi]
          Length = 370

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/314 (39%), Positives = 190/314 (60%), Gaps = 29/314 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++    +KK Y KCARI
Sbjct: 58  VEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGSDKKSYKKCARI 117

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+ +  AA RYTE R+  
Sbjct: 118 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEYNA-AAMRYTEARISD 176

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++  + VD+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HNL 
Sbjct: 177 FCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNLV 236

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR---- 251
           +V++  ++ + N  I  D L  II+GPDF TG +I+ +   ++N Y TG+GSI+IR    
Sbjct: 237 DVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTGKGSIIIRSNVF 296

Query: 252 ------------------GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
                              + ++E  +   +++++  +P  V    ++E I  ++ EK+ 
Sbjct: 297 YEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIENIVTVLNEKKN 356

Query: 294 VD---IADLRDESD 304
                ++ +RDES+
Sbjct: 357 EHDNILSKIRDESE 370


>gi|224458686|gb|ACN43206.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 267

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/287 (44%), Positives = 185/287 (64%), Gaps = 26/287 (9%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIE 60

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTL 120

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR
Sbjct: 121 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIAR 180

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 181 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 214

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 EEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 261


>gi|89515127|gb|ABD75393.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797766|gb|ABO27402.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797768|gb|ABO27403.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKDELGAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|126797804|gb|ABO27421.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 176

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 112/175 (64%), Positives = 140/175 (80%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W + D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRL RLT LGRD+I +ELN++G EI + LDILSSR+R+  I+K EL +V+DE  T
Sbjct: 61  RAILELRLQRLTALGRDEIADELNTIGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+
Sbjct: 121 PRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175


>gi|126797742|gb|ABO27390.1| DNA gyrase subunit A [Sinorhizobium fredii]
          Length = 176

 Score =  228 bits (580), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDSLIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|295394158|gb|ADG03690.1| DNA gyrase subunit A [Streptococcus gordonii]
          Length = 175

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 136/175 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFIDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNL E +D    V+DNP+     +ME+
Sbjct: 121 IVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKLVMDNPEATTRDIMEV 175


>gi|126797780|gb|ABO27409.1| DNA gyrase subunit A [Sinorhizobium sp. BR816]
          Length = 176

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|126797770|gb|ABO27404.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +++DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKDELGAIRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|89515121|gb|ABD75390.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|89515123|gb|ABD75391.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797756|gb|ABO27397.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|126797758|gb|ABO27398.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797760|gb|ABO27399.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
          Length = 176

 Score =  227 bits (579), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 138/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|217069483|gb|ACJ83230.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 196

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 148/194 (76%), Gaps = 1/194 (0%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 4   AEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNEL 63

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK
Sbjct: 64  IDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK 123

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 124 RA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDA 182

Query: 319 SADVILNQLYRYTS 332
            ++++LN L++ T+
Sbjct: 183 MSEIVLNNLFKSTT 196


>gi|89515109|gb|ABD75384.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797734|gb|ABO27386.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797736|gb|ABO27387.1| DNA gyrase subunit A [Sinorhizobium americanum]
          Length = 176

 Score =  227 bits (578), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/176 (63%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|67463753|pdb|1ZI0|A Chain A, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
 gi|67463754|pdb|1ZI0|B Chain B, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
          Length = 307

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 209/365 (57%), Gaps = 59/365 (16%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS
Sbjct: 2   QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 61

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +
Sbjct: 62  RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATAN 118

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R
Sbjct: 119 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 178

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G N+ GVRGI L +GD+V+S+ +                          GD   +T+
Sbjct: 179 AM-GCNTTGVRGIRLGEGDKVVSLIVP------------------------RGDGAILTA 213

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +N                             G+GKRT+  ++   +R+ KG+ +  V++
Sbjct: 214 TQN-----------------------------GYGKRTAVAEYPTKSRATKGVISIKVTE 244

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +V    V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV +
Sbjct: 245 RN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 302

Query: 895 ERIRE 899
           +R+ E
Sbjct: 303 QRVAE 307


>gi|217069491|gb|ACJ83234.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 187

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 145/187 (77%), Gaps = 1/187 (0%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG
Sbjct: 2   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 61

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK S 
Sbjct: 62  LLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEKKS- 120

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++
Sbjct: 121 NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSE 180

Query: 322 VILNQLY 328
           ++LN L+
Sbjct: 181 IVLNNLF 187


>gi|89515113|gb|ABD75386.1| DNA gyrase subunit A [Sinorhizobium fredii]
 gi|126797738|gb|ABO27388.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
          Length = 176

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 139/175 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|170676377|gb|ACB30376.1| DNA gyrase subunit A [Burkholderia pseudomallei]
 gi|170676383|gb|ACB30379.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 126/157 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|126797782|gb|ABO27410.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 176

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 139/175 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 121 PRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|154243307|gb|ABS71826.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 132/165 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + R+AQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|31745507|gb|AAP55227.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|217069463|gb|ACJ83220.1| DNA gyrase subunit A [Campylobacter lari subsp. lari]
          Length = 194

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 148/194 (76%), Gaps = 1/194 (0%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 2   AEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNEL 61

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK
Sbjct: 62  IDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK 121

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 122 RA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDA 180

Query: 319 SADVILNQLYRYTS 332
            ++++LN L++ T+
Sbjct: 181 MSEIVLNNLFKSTT 194


>gi|215480311|gb|ACJ67500.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/287 (44%), Positives = 185/287 (64%), Gaps = 26/287 (9%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P+QVNKA ++EKIA+LVR+K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPFQVNKAKLIEKIADLVRDKKIE 60

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTL 120

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR
Sbjct: 121 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIAR 180

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 181 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 214

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 EEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 261


>gi|224458682|gb|ACN43204.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/293 (44%), Positives = 187/293 (63%), Gaps = 26/293 (8%)

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I
Sbjct: 1   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 60

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+   
Sbjct: 61  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLN 120

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E A
Sbjct: 121 LKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIA 180

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+++                            L+E Q +AIL++RL RLTGL R+ I
Sbjct: 181 RTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKI 214

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
             E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLE 267


>gi|126797748|gb|ABO27393.1| DNA gyrase subunit A [Sinorhizobium kostiense]
 gi|126797750|gb|ABO27394.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 140/176 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQSAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL++V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|170676385|gb|ACB30380.1| DNA gyrase subunit A [Burkholderia mallei]
 gi|170676387|gb|ACB30381.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/157 (64%), Positives = 126/157 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|31745481|gb|AAP55214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745489|gb|AAP55218.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745501|gb|AAP55224.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745483|gb|AAP55215.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 163

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745509|gb|AAP55228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|217069487|gb|ACJ83232.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 190

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 144/187 (77%), Gaps = 1/187 (0%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 5   AEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNEL 64

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VDG + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK
Sbjct: 65  VDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEK 124

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            S +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A
Sbjct: 125 KS-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREA 183

Query: 319 SADVILN 325
            ++++LN
Sbjct: 184 MSEIVLN 190


>gi|31745493|gb|AAP55220.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745495|gb|AAP55221.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745503|gb|AAP55225.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  224 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|217069465|gb|ACJ83221.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 194

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/191 (56%), Positives = 146/191 (76%), Gaps = 1/191 (0%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 4   AEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNEL 63

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK
Sbjct: 64  IDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK 123

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 124 RA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDA 182

Query: 319 SADVILNQLYR 329
            ++++LN L++
Sbjct: 183 MSEIVLNNLFK 193


>gi|154243301|gb|ABS71823.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/165 (62%), Positives = 131/165 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SL  +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRMAQPFSLCYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|126797786|gb|ABO27412.1| DNA gyrase subunit A [Sinorhizobium sp. Le39]
 gi|126797788|gb|ABO27413.1| DNA gyrase subunit A [Sinorhizobium sp. Lc56]
          Length = 176

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 139/175 (79%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQSAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           PRRT I +G  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 121 PRRTEIADGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|31745491|gb|AAP55219.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|31745497|gb|AAP55222.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|217069471|gb|ACJ83224.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 190

 Score =  224 bits (570), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 145/188 (77%), Gaps = 1/188 (0%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG
Sbjct: 3   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 62

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK + 
Sbjct: 63  LLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKRA- 121

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++
Sbjct: 122 NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSE 181

Query: 322 VILNQLYR 329
           ++LN L++
Sbjct: 182 IVLNNLFK 189


>gi|80159786|ref|YP_398530.1| putative DNA gyrase A subunit [Clostridium phage c-st]
 gi|78675376|dbj|BAE47798.1| putative DNA gyrase A subunit [Clostridium phage c-st]
          Length = 752

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 196/743 (26%), Positives = 348/743 (46%), Gaps = 75/743 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +Q+ ++ +A  VI+   +P + DGL PV+R++L+ + +  V  +K Y+K  R S   M  
Sbjct: 10  LQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLRASSMSMV- 66

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQKAAHFL 142
           Y+  G+  +  A+  MA +  ++   ++ +G+FG         A+ RY ECRL K +  +
Sbjct: 67  YYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKGASPRYIECRLSKYSMDI 125

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L ++ K+ V  + N+D +  EP+VL +  PNVL+N    IAVG+A+ I  HNL +  D  
Sbjct: 126 LKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGHNLIDTCDSI 185

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           +  I   DI  D  ++II+ PD P G  VI  +      Y TG GS  + G   +++   
Sbjct: 186 INYIQTKDI--DKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLGKYKMKQC-- 241

Query: 262 DREQIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           D+  I  + EIPY+     +  K+ E   +    +I D+ D SDR+G ++ I LK+  + 
Sbjct: 242 DKYNIFSIYEIPYETTIEDIENKLREKCYKGLFKEIIDIHDASDRKGIQLDIYLKKNTNL 301

Query: 321 DVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              +++L +YT  +S F  N  ++ L+G  P   +L  I   ++  R   +     Y + 
Sbjct: 302 KQFISKLRKYTPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIKNEMLYDVK 361

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  +  + L GL I    LD+ ++IIR S   + A  EL++                   
Sbjct: 362 KYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKY------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL----SSR 494
           + +  +   Y++ +           RL  + +D I N+L ++  E+   ++ L    +S 
Sbjct: 404 FKLNKEQAEYIATI-----------RLVNINQDWILNKLQNID-ELSSNVNKLNTDYNSE 451

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV-PL 553
             +  II  +L  VK +   PRRT              I+ ED +  VSH   V+   P 
Sbjct: 452 QTIKEIIISQLEEVKKKFGKPRRTE-------------IIYEDEIADVSHEDLVEDFNPT 498

Query: 554 SVYRAQRRGGKGR---SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            V   Q+   K R       ++D+D +      +    +L F++ G V   KV+ L    
Sbjct: 499 LVLTEQQYIKKNRVFSQSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHK 558

Query: 611 PQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P   G  L N+L   L   E++  I    + + S     V+   ++GNV R  L ++ + 
Sbjct: 559 PSTYGDFLPNLLGEYLQDNEKVIYISTTKDYKGS-----VIAVFENGNVARIDLQEY-KS 612

Query: 669 NRSGKIAMK-LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++ +I M   ++   ++S+   T + D+LL ++ G+ +    S +R    RN+ GV G+
Sbjct: 613 KQNRQIPMSAYNTNSNLISIAVITTDVDVLLVSQEGKALIINTSQLRPTKSRNTQGVVGM 672

Query: 728 SL-AKGDQVISMAIVLHADADYD 749
            +  + ++VI   I +  D +++
Sbjct: 673 KIDPENNKVIGSIIGVTVDDNFN 695


>gi|308198963|dbj|BAJ22616.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 176

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 129/173 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 4   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 63

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS 
Sbjct: 64  QDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSE 123

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D  L+
Sbjct: 124 SEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLE 176


>gi|122939097|gb|ABM69130.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797772|gb|ABO27405.1| DNA gyrase subunit A [Ensifer adhaerens]
          Length = 176

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 136/176 (77%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDSLIRLIDDPRHRINEDNTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL ++  E  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMTIVKDELTAISQEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRR+ I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRSEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|89515117|gb|ABD75388.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 139/176 (78%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  D T  LSE Q 
Sbjct: 1   ANIDEVIKLIRHAPDPQSAREQLMERRWPARDVDALIRLIDDPRHRINEDDTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL++V+DE  T
Sbjct: 61  RAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176


>gi|167957029|ref|ZP_02544103.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 417

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 232/448 (51%), Gaps = 60/448 (13%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE+Q +AIL ++L RLTGL R+ I NEL  L   I++   IL+    +L IIK EL+ +
Sbjct: 16  LSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQEILNIIKNELIEM 75

Query: 509 KDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           K++    RR++++   L    DE+ I  ED VV ++   Y+KR   S YR Q RGGKG+ 
Sbjct: 76  KEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTLASDYRKQNRGGKGKR 135

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
           G+  ++ D +  +    TH  +LFF++ G V++ K + +P  S QA+G A +N+L L   
Sbjct: 136 GMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAAVNLLQLQPE 195

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E+IT I+ F +D  + ++ Y+  AT  G +++  + D+  I  +G IA+KLD  DE+  +
Sbjct: 196 EKITAIIKFEKD--AKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELRWI 253

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +  +  +DIL++T  GQ +RF     R   GR + GVRG+ L   D V+ M I       
Sbjct: 254 KRSSGNDDILISTSAGQAIRFNEKDARSM-GRAARGVRGVRLRPNDSVVGMDIA------ 306

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                        ND                  ++ +L +SE G
Sbjct: 307 -----------------------------ND------------------DRTLLVISENG 319

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVP 866
           +GK T   +F    R G GI+A  V+   + G +++V  +  +D + +LVS +G  IRV 
Sbjct: 320 YGKATKISNFPSHKRGGVGIKAAVVTA--KTGPIISVKTIQQDDIEALLVSTQGQTIRVS 377

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSV 894
           + +I +  R T+GV I  T+ D+ V SV
Sbjct: 378 LKDIPVLGRTTQGVRIMKTSDDDSVASV 405


>gi|170676379|gb|ACB30377.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 125/157 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+Y  + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYGTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|126797794|gb|ABO27416.1| DNA gyrase subunit A [Rhizobium huautlense]
          Length = 176

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 135/176 (76%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DE++ +IR +P+P+TAR +LM R W A D++ LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEIILLIRRAPDPQTAREQLMTRRWPAQDVEALIRLIDDPRHRINDDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I +ELN +G EI + LDILSSR R+  I+K E+  V+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIGDELNKIGAEISDYLDILSSRLRIQQIVKDEMAEVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRRT I+EG  DM+DED I REDMVVTVSHLGY+KRV L  YRAQRRGGKGRSG+ 
Sbjct: 121 PRRTEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVALGTYRAQRRGGKGRSGMA 176


>gi|217069479|gb|ACJ83228.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 185

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 145/186 (77%), Gaps = 1/186 (0%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG + +IDN
Sbjct: 1   DTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYIIDN 60

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK + +++ IV+
Sbjct: 61  KEASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKRA-NKDIIVI 119

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+PYQ NKA ++E+IA+LV+EK+I  I+++RDESDR+G RVVIELKR A ++++LN L+
Sbjct: 120 DELPYQTNKARLIEQIADLVKEKQIEGISEIRDESDREGIRVVIELKREAMSEIVLNNLF 179

Query: 329 RYTSLQ 334
           + T+++
Sbjct: 180 KSTAME 185


>gi|170676381|gb|ACB30378.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  223 bits (567), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 125/157 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPH + A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHCDIAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|31745505|gb|AAP55226.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|289804388|ref|ZP_06535017.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 161

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/161 (63%), Positives = 127/161 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           DG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 161


>gi|47834514|gb|AAT38944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 169

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 129/167 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 122

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           AVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFPT A
Sbjct: 123 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA 169


>gi|217069467|gb|ACJ83222.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 186

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/187 (55%), Positives = 144/187 (77%), Gaps = 1/187 (0%)

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG + +
Sbjct: 1   IDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYL 60

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK + +++ 
Sbjct: 61  IDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKRA-NKDI 119

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++++LN
Sbjct: 120 IVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSEIVLN 179

Query: 326 QLYRYTS 332
            L++ T+
Sbjct: 180 NLFKSTT 186


>gi|217069493|gb|ACJ83235.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 182

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/183 (59%), Positives = 142/183 (77%), Gaps = 1/183 (0%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 60

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK S 
Sbjct: 61  LLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEKKS- 119

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++
Sbjct: 120 NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSE 179

Query: 322 VIL 324
           ++L
Sbjct: 180 IVL 182


>gi|75761793|ref|ZP_00741728.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490726|gb|EAO54007.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 362

 Score =  221 bits (562), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 213/398 (53%), Gaps = 60/398 (15%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTV 542
           I E   IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T+
Sbjct: 4   IAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITL 63

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K
Sbjct: 64  THNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTK 123

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  L
Sbjct: 124 GYEIPEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPL 180

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ 
Sbjct: 181 SSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAA 239

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L + DQV+ M IV                            EE T+        
Sbjct: 240 GVKAITLGEEDQVVGMEIV----------------------------EEDTN-------- 263

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LV
Sbjct: 264 -----------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLV 304

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           AV  V   + I+L++  G +IR+PV++I    R T+GV
Sbjct: 305 AVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGV 342


>gi|255030250|ref|ZP_05302201.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 213

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 144/209 (68%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + 
Sbjct: 5   EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE
Sbjct: 65  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP 
Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           HNL E+++  +  +DNP    D +M+I++
Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVK 213


>gi|126797796|gb|ABO27417.1| DNA gyrase subunit A [Rhizobium galegae]
          Length = 176

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 136/176 (77%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
           AN+DE++ +IR +P+P+TAR +LM R W A D+  LI LIDD  + I  DGT  LSE Q 
Sbjct: 1   ANIDEIILLIRRAPDPQTAREQLMTRRWPAQDVDALIRLIDDPRHKINEDGTYNLSEEQA 60

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           RAILELRLARLT LGRD+I +ELN +G EI + LDILSSR R+  I+K EL +V+DE  T
Sbjct: 61  RAILELRLARLTALGRDEIGDELNKIGAEISDYLDILSSRLRIQTIVKDELAAVRDEFGT 120

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           PRR++I++  L+M+DED I REDMVVTVSHLGY+KRV L  YRAQRRGGKGRSG+ 
Sbjct: 121 PRRSQILDAGLEMDDEDLIAREDMVVTVSHLGYIKRVTLGTYRAQRRGGKGRSGMA 176


>gi|253682983|ref|ZP_04863769.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
 gi|253560812|gb|EES90275.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
          Length = 752

 Score =  220 bits (561), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 197/743 (26%), Positives = 346/743 (46%), Gaps = 75/743 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +Q+ ++ +A  VI+   +P + DGL PV+R++L+ + +  V  +K Y+K  R S   M  
Sbjct: 10  LQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLRASSMSMV- 66

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD--PPAAERYTECRLQKAAHFL 142
           Y+  G+  +  A+  MA +  ++   ++ +G+FG         A+ RY ECRL K +  +
Sbjct: 67  YYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKGASPRYIECRLSKYSMDI 125

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L ++ K+ V  + N+D +  EP+VL +  PNVL+N    IAVG+A+ I  HNL +  D  
Sbjct: 126 LKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGHNLIDTCDSI 185

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           +  I   DI  D  ++II+ PD P G  VI  +      Y TG GS  + G   +++   
Sbjct: 186 INYIQTKDI--DKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLGKYKMKQC-- 241

Query: 262 DREQIV-VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           D+  I  + EIPY+     +  K+ E   +    +I D+ D SDR+G ++ I LK+  + 
Sbjct: 242 DKYNIFSIYEIPYETTIEDIENKLREKCDKGFFKEIIDIHDASDRKGIQLDIYLKKNTNL 301

Query: 321 DVILNQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              +++L +Y   +S F  N  ++ L+G  P   +L  I   ++  R   +     Y + 
Sbjct: 302 KQFISKLRKYIPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIKNEMLYDVK 361

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  +  + L GL I    LD+ ++IIR S   + A  EL++                   
Sbjct: 362 KYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKY------------------ 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL----SSR 494
           + +  +   Y++ +           RL  + +D I N+L ++  E+   ++ L    +S 
Sbjct: 404 FKLNKEQAEYIATI-----------RLVNINQDWILNKLQNID-ELSSNVNKLNTDYNSE 451

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV-PL 553
             +  II  +L  VK +   PRRT              I+ ED +  VSH   V+   P 
Sbjct: 452 QTIKEIIISQLEEVKKKFGKPRRTE-------------IIYEDEIADVSHEDLVEDFNPT 498

Query: 554 SVYRAQRRGGKGR---SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            V   Q+   K R       ++D+D +      +    +L F++ G V   KV+ L    
Sbjct: 499 LVLTEQQYIKKNRVFSQSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHK 558

Query: 611 PQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           P   G  L N+L   L   E++  I    + + S     V+   ++GNV R  L ++ + 
Sbjct: 559 PSTYGDFLPNLLGEYLQDNEKVIYISTTKDYKGS-----VIAVFENGNVARIDLQEY-KS 612

Query: 669 NRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++ +I M   + D  ++S+   T + D+LL ++ G+ +    S +R    RN+ GV G+
Sbjct: 613 KQNRQIPMSAYNTDSNLISIAVITTDVDVLLVSQEGKALIVNTSQLRPTKSRNTKGVVGM 672

Query: 728 SLAKGD-QVISMAIVLHADADYD 749
            +   D +VI   I +  D +++
Sbjct: 673 KIDPEDNKVIGSIIGVTVDHNFN 695


>gi|217069475|gb|ACJ83226.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 191

 Score =  220 bits (561), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 5   AEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNEL 64

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK
Sbjct: 65  IDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK 124

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A
Sbjct: 125 RA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDA 183

Query: 319 SADVILNQ 326
            ++++LN 
Sbjct: 184 MSEIVLNN 191


>gi|298104538|gb|ADI55009.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 160

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 98/160 (61%), Positives = 128/160 (80%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL 
Sbjct: 61  HGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLD 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           K+TVD+ PNYDG+   P V+  + P +LVNG  GIAVGMA
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 160


>gi|118566969|gb|ABL01795.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566973|gb|ABL01797.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 131/163 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|217069469|gb|ACJ83223.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 183

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/184 (57%), Positives = 142/184 (77%), Gaps = 1/184 (0%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 60

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK + 
Sbjct: 61  LLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKRA- 119

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++
Sbjct: 120 NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSE 179

Query: 322 VILN 325
           ++LN
Sbjct: 180 IVLN 183


>gi|21327935|dbj|BAC00773.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 199

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/199 (50%), Positives = 139/199 (69%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 1   LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   
Sbjct: 61  GDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALM 217
           +   +  IDNPDI ++ LM
Sbjct: 181 IQATLKYIDNPDITVNQLM 199


>gi|118566965|gb|ABL01793.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|215480313|gb|ACJ67501.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 260

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/279 (44%), Positives = 179/279 (64%), Gaps = 26/279 (9%)

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDE
Sbjct: 1   SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 60

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++
Sbjct: 61  SDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYL 120

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++  
Sbjct: 121 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ-- 178

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E Q +AIL++RL RLTGL R+ I  E  SL  
Sbjct: 179 ------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVK 214

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            I E  DIL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 LIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIV 253


>gi|329124299|gb|AEB72027.1| DNA gyrase subunit A [Aeromonas sp. A1(2011)]
          Length = 158

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 126/158 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYADYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL 
Sbjct: 61  HGDVAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLD 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVG
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 158


>gi|118566971|gb|ABL01796.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  218 bits (555), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566967|gb|ABL01794.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566975|gb|ABL01798.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  217 bits (553), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/163 (60%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|3510606|gb|AAC33552.1| gyrase subunit A [Chlamydia trachomatis]
          Length = 179

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 129/176 (73%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMA
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179


>gi|1405716|emb|CAA97570.1| gyrase A subunit [Haemophilus influenzae]
          Length = 171

 Score =  217 bits (553), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 132/178 (74%), Gaps = 7/178 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 171


>gi|50660404|gb|AAT80772.1| gyrase A [Brevundimonas diminuta ATCC 11568]
          Length = 156

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 100/156 (64%), Positives = 125/156 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KCAR+ G+V+G++HPHG+A++Y 
Sbjct: 1   VIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCARVVGDVLGRFHPHGDASVYM 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE ++  AA  LL D+ KDTVDF+P
Sbjct: 61  ALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKMAPAAVALLTDIDKDTVDFQP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYD    EPVVL AR PN+LVNG GGIAVGMATNIP
Sbjct: 121 NYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIP 156


>gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 622

 Score =  216 bits (550), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/439 (32%), Positives = 234/439 (53%), Gaps = 51/439 (11%)

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           ++ L   TVDF P Y+G  +EP ++   +PN+L NG  GIAVGMATNIP+HN+ EV+D  
Sbjct: 1   MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGVSH------ 255
           + +IDNP ++ + LME++ GPDF TG  ++    +   AY TGRGS  +RGV H      
Sbjct: 61  LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120

Query: 256 -------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                  IE+  G + Q+V++EIPYQV K  ++E+IA+ + +K++  + D+RDESD    
Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREE 367
            V++   R    D++   +++ T +++ F +NM  L+  + P    L  +L+ + A + E
Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRT+Y L +   R  ++ G  +A  NLD V+ IIR+   P    + +M   ++    
Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEP----KAVMMAEFS---- 292

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AIL +RL  L  L   +++ E + L  E +E 
Sbjct: 293 ---------------------LTDRQAEAILNMRLRSLRKLEEMELKQEKSELLAEQEEL 331

Query: 488 LDILSSRSRLLGIIKQELLSVKDEL--DT---PRRTRIVEG--LLDMEDEDCIVREDMVV 540
             +L S +R    +K++L +++ +   DT    RRTRI E    ++   +  I +E + V
Sbjct: 332 NKLLESPARQRTRLKKDLRALRKDYAEDTALGARRTRIEEAAPAVEFSMDAMIEKEPVTV 391

Query: 541 TVSHLGYVKRVPLSVYRAQ 559
            +S  G+++     V  AQ
Sbjct: 392 ILSQKGWIRAAKGHVDLAQ 410


>gi|227553418|ref|ZP_03983467.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177447|gb|EEI58419.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 198

 Score =  215 bits (548), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 139/193 (72%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCV 203
           PTHNL E++DG V
Sbjct: 185 PTHNLAEIIDGTV 197


>gi|213024898|ref|ZP_03339345.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 161

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 126/160 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 1   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 60

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 61  AHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 120

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
           ++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+
Sbjct: 121 INGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIE 160


>gi|217069489|gb|ACJ83233.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 178

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 137/178 (76%), Gaps = 1/178 (0%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF P YD    EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG + ++D
Sbjct: 2   KDTVDFVPXYDDXMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLLD 61

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           + D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK S +++ IV
Sbjct: 62  HKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEKKS-NKDIIV 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           + E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++++LN
Sbjct: 121 IDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIVLN 178


>gi|29602637|gb|AAO85705.1| GyrA [Campylobacter jejuni]
          Length = 170

 Score =  214 bits (544), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 125/166 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 5   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 65  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAV
Sbjct: 125 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAV 170


>gi|110626537|gb|ABG79009.1| DNA gyrase subunit A [Chromobacterium haemolyticum]
          Length = 163

 Score =  214 bits (544), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 125/162 (77%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y + VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG+ 
Sbjct: 1   YVMGVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKKSARIVGDVIGKYHPHGDT 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+ + AH LL D+ K+TV
Sbjct: 61  AVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEIRMARIAHELLADIEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           DF PNYDGS  EP++L A+ PN+L+NG   IAVG+   I  H
Sbjct: 121 DFGPNYDGSEHEPLILPAKIPNLLINGAPRIAVGVGPPISRH 162


>gi|213419120|ref|ZP_03352186.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 219

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 142/201 (70%), Gaps = 3/201 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  
Sbjct: 20  LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL 
Sbjct: 80  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 138

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL 
Sbjct: 139 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 198

Query: 197 EVVDGCVAVIDNPDIDLDALM 217
           EV    + +I+ P   LD L+
Sbjct: 199 EVAKAAITLIEQPKTTLDQLL 219


>gi|29602633|gb|AAO85703.1| GyrA [Campylobacter jejuni]
          Length = 162

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
            +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G
Sbjct: 1   SIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           +YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL
Sbjct: 61  RYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 KDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 162


>gi|329124303|gb|AEB72029.1| DNA gyrase subunit A [Aeromonas sp. A7(2011)]
          Length = 158

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 124/154 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 2   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 62  AVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           D+ PNYDG+   P V+  + PN+LVNG  GIAVG
Sbjct: 122 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 155


>gi|68010496|ref|XP_670772.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486339|emb|CAI03944.1| hypothetical protein PB301451.00.0 [Plasmodium berghei]
          Length = 267

 Score =  211 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 111/251 (44%), Positives = 162/251 (64%), Gaps = 4/251 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCARI 77
           V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++   ++KK Y KCARI
Sbjct: 7   VEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCARI 66

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+ +  AA RYTE R+  
Sbjct: 67  VGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYNA-AAMRYTEARISD 125

Query: 138 AAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             +  LLD++  + +D+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HN+ 
Sbjct: 126 FCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNIV 185

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSH 255
           +V++  +  + N  I  D L  II  PDF TG +I+  +  +++ Y TG+G+IVIR    
Sbjct: 186 DVINASINFLINEKITHDELFNIIXAPDFSTGGIIIANKDTLRDIYHTGKGNIVIRSNRF 245

Query: 256 IEKTSGDREQI 266
            E    ++  I
Sbjct: 246 YEYAHKNKTDI 256


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 126/175 (72%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   +K +
Sbjct: 374 QQNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPDKAF 433

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC R+ G+VMG++HPHG+ A+YD+L R+ Q WSLR  L  GQGNFGS   D  AA RYT
Sbjct: 434 SKCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYT 493

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           E ++   A  ++ D+ +DTVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGM
Sbjct: 494 ETKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGSVGIAVGM 548



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 183/368 (49%), Gaps = 64/368 (17%)

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G +KR  +  YR Q RGGKG     +R +D V   F+ +TH  +LFF++ G VY+ K +
Sbjct: 546 VGMIKRTRIDNYRTQHRGGKGVKDAALRADDIVEHFFVTTTHHWLLFFTNTGRVYRAKTY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   A+G+ L N+L+L   E +T I+   E E+   + ++V AT+ G V++  L++
Sbjct: 606 EVPEGGRDAKGQHLANLLALAPDESVTQILDLREFEA---DRFLVLATRDGLVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722
           +      G IA+KL   DE++S      ++D+LL +K G  VRF  S  A+R   GR++ 
Sbjct: 663 YDTNRTGGIIAIKLRDEDELVSALIAESDDDVLLISKHGMSVRFTASDQALRPM-GRSTS 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG++   GDQ++  +                       R+  G               
Sbjct: 722 GVRGMNFRDGDQLLQAS-----------------------RITEGG-------------- 744

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GAL 841
                           ++  V+E G+ KRT+  ++R+ NR G GI+   V+K++E  G L
Sbjct: 745 ----------------YVFVVTEGGYAKRTAVDEYRVQNRGGFGIK---VAKLDEARGDL 785

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  F V++ D+++ V   G ++R  V E+    R T GVV     + +R++ + R  E  
Sbjct: 786 VGGFIVDEGDEVLAVLASGKVVRSNVAEVPAKGRNTMGVVFARFPERDRIIGIARNTERG 845

Query: 902 IVD-EAES 908
           + D EAES
Sbjct: 846 LDDAEAES 853


>gi|221504453|gb|EEE30126.1| hypothetical protein TGVEG_051980 [Toxoplasma gondii VEG]
          Length = 1211

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 189/323 (58%), Gaps = 32/323 (9%)

Query: 129 RYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           RYTECRL +     LL +L    V FRPN+D + +EPVV  A  P VL+ G  GIAVGM+
Sbjct: 2   RYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMS 61

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I  AY  GRG 
Sbjct: 62  TQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIPGAYKEGRGR 121

Query: 248 IVIRGVSHIE---------------------KTSGDR---------EQIVVTEIPYQVNK 277
           +++RG  H+E                     +   DR          ++V+TE+PY VNK
Sbjct: 122 VLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNVRNGRKNERRLVITELPYGVNK 181

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L ++T+LQ   
Sbjct: 182 STVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVYI 241

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            ++++AL  G KP RF+L  +L +++AFR   + R       + + R+H+L GL  AV+ 
Sbjct: 242 PMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVSL 301

Query: 397 LDEVVRIIRFSPNPETARRELMQ 419
           +D+VV+ +R S + + A+++L +
Sbjct: 302 MDDVVKTVRESLSADEAKQKLTE 324



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 22/138 (15%)

Query: 691  TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            T    I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V     + + 
Sbjct: 937  TNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEA 996

Query: 751  RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +    K          GD++E  S KN+SS E              E  +L V+  GFGK
Sbjct: 997  KTESRKE---------GDSDETQS-KNESSNEK------------AEPSLLIVTAAGFGK 1034

Query: 811  RTSSYDFRISNRSGKGIR 828
            R      R+  R G G+R
Sbjct: 1035 RIRVSALRMQRRRGVGVR 1052


>gi|238913907|ref|ZP_04657744.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 338

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/368 (34%), Positives = 203/368 (55%), Gaps = 61/368 (16%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 1   MTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 60

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++
Sbjct: 61  WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKK 117

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR
Sbjct: 118 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GR 176

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI LA GD  +   I+                                      
Sbjct: 177 TATGVRGIKLA-GDDKVVSLIIPRG----------------------------------- 200

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G
Sbjct: 201 -----------------EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--G 241

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  
Sbjct: 242 SVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 299

Query: 900 SEIVDEAE 907
           +E VD+ E
Sbjct: 300 AEPVDDEE 307


>gi|149346164|gb|ABR23653.1| gyrase A [Aeromonas hydrophila]
          Length = 152

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 122/152 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           D+ PNYDG+   P V+  + PN+LVNG  GIA
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 152


>gi|315926261|ref|ZP_07922447.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620438|gb|EFV00433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 208

 Score =  211 bits (536), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 144/208 (69%), Gaps = 5/208 (2%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           ++ D+ +DT DF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHNL EV + 
Sbjct: 1   MVRDIDQDTADFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNLREVNEA 60

Query: 202 CVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
               + +P+      L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ +R V  +E
Sbjct: 61  VQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTMRAVIDME 120

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316
           +    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R+VI LKR
Sbjct: 121 EDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQRLVIVLKR 180

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL 344
            A   V++N LY++T+LQ  F  NM+AL
Sbjct: 181 DAQPRVVMNNLYKHTALQDTFGCNMLAL 208


>gi|46191316|ref|ZP_00206762.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
          Length = 720

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 197/338 (58%), Gaps = 27/338 (7%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGR
Sbjct: 1   MATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR
Sbjct: 61  GTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDR 120

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  
Sbjct: 121 HNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDH 180

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM      
Sbjct: 181 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM------ 234

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                   ++ D            L EVQ + IL+LRL RLT + R ++  E + L   I
Sbjct: 235 --------VVFD------------LDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRI 274

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           +E   IL+S   L  ++  E+     +  +PRRT +++
Sbjct: 275 EELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLD 312


>gi|46019110|emb|CAE52019.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 159

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 127/159 (79%)

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G 
Sbjct: 1   LRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGV 60

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  
Sbjct: 61  LAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSG 120

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRD
Sbjct: 121 KERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRD 159


>gi|1296999|emb|CAA64976.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 99/148 (66%), Positives = 115/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + L L++GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|329124301|gb|AEB72028.1| DNA gyrase subunit A [Aeromonas sp. A19(2011)]
          Length = 153

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/152 (61%), Positives = 121/152 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD
Sbjct: 2   VIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYD 61

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 62  TIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVP 121

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           NYDG+   P V+  + PN+LVNG  GIAVG A
Sbjct: 122 NYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWA 153


>gi|257362148|gb|ACV53175.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG++A Y A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|257362154|gb|ACV53177.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|124365597|gb|ABN09827.1| gyrase subunit A [Clostridium difficile]
 gi|124365599|gb|ABN09828.1| gyrase subunit A [Clostridium difficile]
          Length = 154

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 94/154 (61%), Positives = 122/154 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHP
Sbjct: 1   SYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ 
Sbjct: 61  HGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           K+TVDF+PN+D S +EP VL ARYPN+LVNG  G
Sbjct: 121 KETVDFKPNFDESLKEPSVLPARYPNLLVNGSNG 154


>gi|257362157|gb|ACV53178.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDYACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|149346162|gb|ABR23652.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 151

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/151 (60%), Positives = 121/151 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDVA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD
Sbjct: 61  VYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           + PNYDG+   P V+  + PN+LVNG  GIA
Sbjct: 121 WVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 151


>gi|238810482|dbj|BAH70215.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810484|dbj|BAH70216.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810486|dbj|BAH70217.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810488|dbj|BAH70218.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810490|dbj|BAH70219.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810492|dbj|BAH70220.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810494|dbj|BAH70221.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810496|dbj|BAH70222.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810498|dbj|BAH70223.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810500|dbj|BAH70224.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810502|dbj|BAH70225.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810504|dbj|BAH70226.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810506|dbj|BAH70227.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810508|dbj|BAH70228.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 118/149 (79%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|259020306|gb|ACV90437.1| DNA gyrase subunit A [Vibrio cholerae O139]
          Length = 151

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 116/146 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GI
Sbjct: 61  DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGI 120

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDN 208
           AVGMATNIP HNLGEV+DGC+A IDN
Sbjct: 121 AVGMATNIPPHNLGEVIDGCLAYIDN 146


>gi|832878|gb|AAA67419.1| DNA gyrase [Aliivibrio salmonicida]
          Length = 147

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 117/147 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRI 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ +SLR +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMA 187
            Q P VL  R PN+LVNG  GIAVGMA
Sbjct: 121 EQIPAVLPTRVPNLLVNGSSGIAVGMA 147


>gi|139439850|ref|ZP_01773215.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
 gi|133774778|gb|EBA38598.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
          Length = 339

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 200/376 (53%), Gaps = 65/376 (17%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT++H GYVKR+P++ YRAQ+RGGKG SGV ++++D + ++FI STH  VLFFSS G 
Sbjct: 1   MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKH 654
           VY+ KV  LP+G+ QARG A++N+L   +GE+I +++    FP +E      Y++FATK 
Sbjct: 61  VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFPANE------YLMFATKS 114

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  +S + +  R G IA+ L   D +L+V    + + I+L T  G+ + F    +R
Sbjct: 115 GMVKKTVMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVR 174

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR++ GVRGI +  G  V+ M                                E+T+
Sbjct: 175 A-TGRDTSGVRGIGMKDGVSVLGM--------------------------------EVTN 201

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              D                     +  ++E+G+GKRT   D+   NR G+G+    +++
Sbjct: 202 GNGD---------------------LFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTE 240

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G L A+  V    ++ +V++  T+IRV  +EI    RAT+GV + +   ++R+ +V
Sbjct: 241 RK--GNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAV 298

Query: 895 ERIRESEIVDEAESTE 910
            R+  ++   E E  E
Sbjct: 299 ARMTAAKEKPEGEGAE 314


>gi|238810522|dbj|BAH70235.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810524|dbj|BAH70236.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810526|dbj|BAH70237.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810528|dbj|BAH70238.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810530|dbj|BAH70239.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810532|dbj|BAH70240.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810534|dbj|BAH70241.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810536|dbj|BAH70242.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810538|dbj|BAH70243.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810540|dbj|BAH70244.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810542|dbj|BAH70245.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 117/149 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|1296997|emb|CAA64975.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 98/148 (66%), Positives = 114/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIY AL RMAQ +S
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYGALVRMAQPFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + L L++GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAPFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|21732251|emb|CAD37174.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732253|emb|CAD37175.2| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|238810552|dbj|BAH70250.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810554|dbj|BAH70251.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810556|dbj|BAH70252.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810558|dbj|BAH70253.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810560|dbj|BAH70254.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810562|dbj|BAH70255.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 117/149 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|190888708|gb|ACE95979.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888718|gb|ACE95984.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 124/162 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|257362151|gb|ACV53176.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPH ++A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHCDSACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|21732260|emb|CAD37178.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  207 bits (526), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|238810544|dbj|BAH70246.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810546|dbj|BAH70247.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810548|dbj|BAH70248.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810550|dbj|BAH70249.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 118/149 (79%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|21732255|emb|CAD37176.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732258|emb|CAD37177.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732262|emb|CAD37179.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732264|emb|CAD37180.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|190888716|gb|ACE95983.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 124/162 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLIYDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|238810516|dbj|BAH70232.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810518|dbj|BAH70233.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810520|dbj|BAH70234.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 117/149 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|224458688|gb|ACN43207.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 255

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/275 (44%), Positives = 172/275 (62%), Gaps = 26/275 (9%)

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR 
Sbjct: 1   SITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 60

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++
Sbjct: 61  GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQK 120

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++      
Sbjct: 121 VVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ------ 174

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q +AIL++RL RLTGL R+ I  E  SL   I E
Sbjct: 175 --------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAE 214

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
             +IL++  ++L II++EL  +K+  +  RRT IV
Sbjct: 215 LKEILANEEKVLEIIREELTEIKERFNDERRTEIV 249


>gi|89101241|ref|ZP_01174065.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89084047|gb|EAR63224.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 132/198 (66%), Gaps = 1/198 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +SS    EK    + + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G 
Sbjct: 1   MSSASSAEK-FRDLPLEDVLGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMHVEGN 59

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K + K A+  G V+G YHPHG++++YDA+ RM+QDW +R  L+E  GN GS+DGDPP
Sbjct: 60  TNEKGFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNFLVEMHGNNGSIDGDPP 119

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   +  LL D+ K TVDF PN+D +  EP VL A +PN+LVNG  GI+ G
Sbjct: 120 AAMRYTEARLSAISSELLRDIEKHTVDFIPNFDDTSSEPTVLPAMFPNLLVNGSTGISAG 179

Query: 186 MATNIPTHNLGEVVDGCV 203
            AT IP H+LGE++DG +
Sbjct: 180 YATEIPPHHLGEIIDGVI 197


>gi|190888720|gb|ACE95985.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888722|gb|ACE95986.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888724|gb|ACE95987.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888726|gb|ACE95988.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888728|gb|ACE95989.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888730|gb|ACE95990.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|18476193|gb|AAL05404.1| DNA topoisomerase IV subunit C [Enterobacter aerogenes]
          Length = 188

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 98/187 (52%), Positives = 135/187 (72%), Gaps = 3/187 (1%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+
Sbjct: 3   VIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYE 62

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +LG+ TVD+
Sbjct: 63  AMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLLSELGQGTVDW 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    + +++ P   L
Sbjct: 122 VPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAITLLEKPKTTL 181

Query: 214 DALMEII 220
           D L++I+
Sbjct: 182 DELLDIV 188


>gi|193794070|gb|ACF21247.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794156|gb|ACF21290.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794182|gb|ACF21303.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794236|gb|ACF21330.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794248|gb|ACF21336.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794268|gb|ACF21346.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794276|gb|ACF21350.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|238810510|dbj|BAH70229.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810512|dbj|BAH70230.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810514|dbj|BAH70231.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 117/149 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|193794080|gb|ACF21252.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794084|gb|ACF21254.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794100|gb|ACF21262.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794102|gb|ACF21263.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794104|gb|ACF21264.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794112|gb|ACF21268.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794118|gb|ACF21271.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794120|gb|ACF21272.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794122|gb|ACF21273.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794126|gb|ACF21275.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794134|gb|ACF21279.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794140|gb|ACF21282.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794152|gb|ACF21288.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794154|gb|ACF21289.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794162|gb|ACF21293.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794164|gb|ACF21294.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794166|gb|ACF21295.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794168|gb|ACF21296.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794172|gb|ACF21298.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794174|gb|ACF21299.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794184|gb|ACF21304.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794186|gb|ACF21305.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794196|gb|ACF21310.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794214|gb|ACF21319.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794220|gb|ACF21322.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794224|gb|ACF21324.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794226|gb|ACF21325.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794230|gb|ACF21327.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794234|gb|ACF21329.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794244|gb|ACF21334.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794264|gb|ACF21344.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794266|gb|ACF21345.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794270|gb|ACF21347.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794272|gb|ACF21348.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794274|gb|ACF21349.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794286|gb|ACF21355.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794288|gb|ACF21356.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794290|gb|ACF21357.1| DNA gyrase subunit A [Actinomyces naeslundii]
          Length = 188

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    ++
Sbjct: 1   EDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|193794284|gb|ACF21354.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/189 (58%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIHG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|190888706|gb|ACE95978.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888712|gb|ACE95981.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888714|gb|ACE95982.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/162 (57%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVG 162


>gi|193794280|gb|ACF21352.1| DNA gyrase subunit A [Actinomyces johnsonii]
 gi|193794292|gb|ACF21358.1| DNA gyrase subunit A [Actinomyces johnsonii]
          Length = 188

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|190888710|gb|ACE95980.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888736|gb|ACE95993.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888738|gb|ACE95994.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888740|gb|ACE95995.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888742|gb|ACE95996.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888744|gb|ACE95997.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888746|gb|ACE95998.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 122/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|261886134|ref|ZP_06010173.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 430

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 155/484 (32%), Positives = 248/484 (51%), Gaps = 97/484 (20%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSSRSRLLGIIKQELLS 507
           L ++Q+ AIL++RL++L GL R+ +  EL  + +E+ E LD IL S + +  II+ ELL 
Sbjct: 6   LFKLQSNAILDMRLSKLPGLEREKLAAELKEI-LELIEKLDAILKSETLIGNIIRVELLE 64

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+ 
Sbjct: 65  IKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKV 124

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            V   D+DF+   F   +H +++F +  G +Y  KV+++P GS  A+GKA++N++SL   
Sbjct: 125 AVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQAD 184

Query: 628 ERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           E+I  I+P  + DES      + F TK+G V+R  LS+F  I   G  A+ LD  DE+++
Sbjct: 185 EKIKAIIPTTDFDESK----SLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVT 240

Query: 687 V------------------------ETCTQEND---------ILLTTKLGQCVRFPISAI 713
           V                        +T +++N          +   TK G C++F ++ +
Sbjct: 241 VVIANSEPDESYDDSFEDGEGVSNLQTISEDNSENSLESGKMLFAVTKKGMCIKFALNKV 300

Query: 714 RVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           R   GR S GV  I   +  D+V+   ++                               
Sbjct: 301 RQI-GRVSRGVTAIRFKENLDEVVGAVVI------------------------------- 328

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              +NDS                  Q IL+VS+KG GKRT++ ++R+ +R GKG+    +
Sbjct: 329 ---ENDS------------------QEILSVSQKGIGKRTTADEYRLQSRGGKGVICMKL 367

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +   +   LV V  V++   ++ ++  G +IRV +  IR A R T GV++ +   DE VV
Sbjct: 368 TP--KTKDLVGVVMVDEEMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDE-VV 424

Query: 893 SVER 896
           S+ R
Sbjct: 425 SIAR 428


>gi|172073092|gb|ACB71403.1| GyrA [Escherichia coli]
          Length = 152

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 93/152 (61%), Positives = 118/152 (77%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR 
Sbjct: 1   LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + PN+LVNG  GIAVGMATNIP HNL EV++
Sbjct: 121 TKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 152


>gi|832831|gb|AAA87239.1| DNA gyrase [Aeromonas salmonicida]
          Length = 147

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 118/147 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRL 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNYDG+
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMA 187
              P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIAVGMA 147


>gi|238810566|dbj|BAH70257.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810568|dbj|BAH70258.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810570|dbj|BAH70259.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810572|dbj|BAH70260.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810574|dbj|BAH70261.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810576|dbj|BAH70262.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810578|dbj|BAH70263.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810580|dbj|BAH70264.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810582|dbj|BAH70265.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810584|dbj|BAH70266.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810586|dbj|BAH70267.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 116/149 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|190888750|gb|ACE96000.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 122/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|193794068|gb|ACF21246.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794072|gb|ACF21248.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794074|gb|ACF21249.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794076|gb|ACF21250.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794078|gb|ACF21251.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794082|gb|ACF21253.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794086|gb|ACF21255.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794088|gb|ACF21256.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794090|gb|ACF21257.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794092|gb|ACF21258.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794094|gb|ACF21259.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794096|gb|ACF21260.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794098|gb|ACF21261.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794106|gb|ACF21265.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794108|gb|ACF21266.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794110|gb|ACF21267.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794114|gb|ACF21269.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794116|gb|ACF21270.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794124|gb|ACF21274.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794128|gb|ACF21276.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794130|gb|ACF21277.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794132|gb|ACF21278.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794136|gb|ACF21280.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794138|gb|ACF21281.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794142|gb|ACF21283.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794144|gb|ACF21284.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794146|gb|ACF21285.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794148|gb|ACF21286.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794150|gb|ACF21287.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794158|gb|ACF21291.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794160|gb|ACF21292.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794170|gb|ACF21297.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794176|gb|ACF21300.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794178|gb|ACF21301.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794180|gb|ACF21302.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794188|gb|ACF21306.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794192|gb|ACF21308.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794198|gb|ACF21311.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794200|gb|ACF21312.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794202|gb|ACF21313.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794208|gb|ACF21316.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794210|gb|ACF21317.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794212|gb|ACF21318.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794216|gb|ACF21320.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794218|gb|ACF21321.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794222|gb|ACF21323.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794232|gb|ACF21328.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794238|gb|ACF21331.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794240|gb|ACF21332.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794242|gb|ACF21333.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794246|gb|ACF21335.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794250|gb|ACF21337.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794252|gb|ACF21338.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794254|gb|ACF21339.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794256|gb|ACF21340.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794258|gb|ACF21341.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794260|gb|ACF21342.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794262|gb|ACF21343.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794278|gb|ACF21351.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794282|gb|ACF21353.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794298|gb|ACF21361.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|21732266|emb|CAD37181.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  204 bits (518), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 114/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIA GMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAGGMATNIPPHSLNE 154


>gi|238810564|dbj|BAH70256.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 116/149 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           TE R+QK    LL DL K+TVDF PNYDG
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDG 151


>gi|1834401|emb|CAA70292.1| DNA Gyrase subunit A [Chlorobium limicola]
          Length = 148

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 95/148 (64%), Positives = 115/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+GM ++G++  K + K ARI GEV+GKYHPHG+ A+YD+L RM QD+ 
Sbjct: 1   RDGLKPVHRRVLYGMHELGLQAGKPHKKSARIVGEVLGKYHPHGDTAVYDSLVRMVQDFL 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR  LI+GQGNFGSVDGD PAA RYTE R++  A  +L DL K+TVDF  N+D S +EP 
Sbjct: 61  LRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL A  PN+LVNG  GIAVGMATNIP H
Sbjct: 121 VLPAAIPNLLVNGPSGIAVGMATNIPPH 148


>gi|193794194|gb|ACF21309.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794204|gb|ACF21314.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794206|gb|ACF21315.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  204 bits (518), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIHG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|13272209|gb|AAK15778.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 147

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 118/147 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + PN+LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|193794228|gb|ACF21326.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      L+AL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLEALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|193794296|gb|ACF21360.1| DNA gyrase subunit A [Actinomyces viscosus]
          Length = 188

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  +EPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    ++
Sbjct: 1   EDSVDFQDNYDGRNKEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIEQIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|213161597|ref|ZP_03347307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 152

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 119/145 (82%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGS 160
            K AH L+ DL K+TVDF  NYDG+
Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGT 152


>gi|331668933|ref|ZP_08369781.1| DNA gyrase subunit A [Escherichia coli TA271]
 gi|331064127|gb|EGI36038.1| DNA gyrase subunit A [Escherichia coli TA271]
          Length = 167

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 123/156 (78%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            K AH L+ DL K+TVDF  NYDG+ + P     ++
Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKFPTSCQPKF 163


>gi|193794294|gb|ACF21359.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 137/187 (73%), Gaps = 6/187 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYR 329
           +LN LY+
Sbjct: 180 VLNNLYK 186


>gi|193794190|gb|ACF21307.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      LDAL+E I GPDFPTGA ILGR GI++AY +GRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRSGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|13272211|gb|AAK15779.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 147

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 118/147 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + PN+LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|308198967|dbj|BAJ22618.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308198971|dbj|BAJ22620.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199023|dbj|BAJ22646.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199057|dbj|BAJ22663.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 150

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/150 (65%), Positives = 113/150 (75%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
           GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL 
Sbjct: 1   GRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD+S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD
Sbjct: 61  RMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            S  EP VL AR PN+L+NG  GIAVGMAT
Sbjct: 121 DSMSEPDVLPARVPNLLLNGSSGIAVGMAT 150


>gi|161511947|emb|CAP45393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 156

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 116/148 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            + P V+  + PN+LVNG  GIAVGMAT
Sbjct: 121 EKIPDVMPTKIPNLLVNGSSGIAVGMAT 148


>gi|227873176|ref|ZP_03991467.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841007|gb|EEJ51346.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 409

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/438 (31%), Positives = 225/438 (51%), Gaps = 70/438 (15%)

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDME 528
           R+ + NE   L  +I    +IL    RLL +IK+EL  + D+    R+T    + +LD E
Sbjct: 3   RERLENEYQDLLAKIAYYKEILGDERRLLAVIKEELDVIADKYGEDRKTSFSYDDILDAE 62

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D   I  +D+V+T + LGY+KR+    +R Q RGGKG  G+   ++D++ DLF+ + H  
Sbjct: 63  D--LIADDDVVITSTSLGYIKRMSPENFRQQNRGGKGIKGMQTIEKDYIEDLFMTTNHHY 120

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF--PEDESSWNNL 646
           ++FF+++G V++ K + +P  S  ARG AL+N+L L +GE++   +    P+DE      
Sbjct: 121 IMFFTNMGRVFRIKGYEIPEASRTARGTALVNLLPLQEGEKVNASLCLRDPKDEQD---- 176

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  TK G V++  LS++  + R+G IA+ L   D+++  +  +++ +I+L TK G  +
Sbjct: 177 -LILTTKSGMVKKTALSEYANVRRNGLIAISLKEDDQLIEAKLLSKDENIILVTKKGMAI 235

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +F    +R   GR+S+GV GI L  GD+VI M                            
Sbjct: 236 QFNEKDVR-RTGRSSMGVIGIRLNDGDEVIGM---------------------------- 266

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                   QE    E  ++ VSEKG+GK T    F+  NR GKG
Sbjct: 267 ------------------------QESSQGENMLV-VSEKGYGKLTEKSAFKAQNRGGKG 301

Query: 827 IRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           +R   +++  + G LV  F + D D +I+L++ +G +IR+ +  I I  R   GV + + 
Sbjct: 302 MRCYKITE--KTGDLVG-FKLCDQDREILLITTEGIMIRMSLENISIIGRNASGVKLMNL 358

Query: 886 AK--DERVVSVERIRESE 901
            K  D  + SV ++RESE
Sbjct: 359 DKDGDTTIASVAKVRESE 376


>gi|310751822|gb|ADP09360.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751824|gb|ADP09361.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751826|gb|ADP09362.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751828|gb|ADP09363.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751830|gb|ADP09364.1| DNA gyrase A [Pseudomonas andersonii]
          Length = 142

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 113/142 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + PN+L+NG  GIAVGMATN
Sbjct: 121 PTKVPNLLINGSSGIAVGMATN 142


>gi|172073090|gb|ACB71402.1| GyrA [Escherichia coli]
          Length = 149

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 115/148 (77%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPGVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNL 195
             + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|99035108|ref|ZP_01314894.1| hypothetical protein Wendoof_01000268 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 146

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 116/145 (80%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY 157
            RLQK +HFLL+D+ ++TV +   Y
Sbjct: 122 ARLQKVSHFLLNDIDENTVRYLATY 146


>gi|3046558|gb|AAC13492.1| DNA gyrase subunit A [Cronobacter sakazakii]
          Length = 150

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/150 (59%), Positives = 120/150 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           DL K+TVDF  NYDG+ + P V+  + PN+
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNL 150


>gi|172073094|gb|ACB71404.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 149

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 115/148 (77%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNL 195
             + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|13272207|gb|AAK15777.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 117/147 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + P +LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|213023935|ref|ZP_03338382.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 265

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/252 (42%), Positives = 159/252 (63%), Gaps = 4/252 (1%)

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH GYV
Sbjct: 1   DILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYV 60

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP 
Sbjct: 61  KYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPE 120

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F + 
Sbjct: 121 ASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRP 177

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRGI 
Sbjct: 178 RSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRGIK 236

Query: 729 LAKGDQVISMAI 740
           LA  D+V+S+ I
Sbjct: 237 LAGDDKVVSLII 248


>gi|237743166|ref|ZP_04573647.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433462|gb|EEO43674.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 379

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 233/438 (53%), Gaps = 70/438 (15%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + I  E   +   IKE  ++L   +++  I+K+ELL +K++    RRT+I E  +++  E
Sbjct: 1   EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E++++T ++ GYVKR+  S Y+AQRRGGKG S +   ++D+   +   ST  +++
Sbjct: 61  DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI---TTIMPF-PEDESSWNNL 646
            F+  G VY  + + +P  S Q+RG+ L NI++L++GE++     I  F PE E      
Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKE------ 174

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLG 703
            VVF TK+G +++  L +F  IN SG IA+K    D+I+ V   E   +E +IL+ T  G
Sbjct: 175 -VVFITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKE-EILIATHDG 232

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            C RF    IR   GR++ GV+ I+L KGD V+S  ++ + + D                
Sbjct: 233 YCTRFLTDTIRA-TGRSTQGVKAITLRKGDMVVSAMLIKNPETD---------------- 275

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                               ILT++E G+GKRTS  ++   NR 
Sbjct: 276 ------------------------------------ILTITENGYGKRTSLDEYPQYNRG 299

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKG+    V++ N  G +V+V  V+++++++ ++  G +IR  +NEI    RAT+GV I 
Sbjct: 300 GKGVINLKVNEKN--GKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIM 357

Query: 884 STAKDERVVSVERIRESE 901
             A DE+V ++ +I++ E
Sbjct: 358 KVADDEKVAAITKIKKEE 375


>gi|3046556|gb|AAC13491.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 150

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/150 (59%), Positives = 120/150 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH L+ 
Sbjct: 61  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           DL K+TVDF  NYDG+ ++P V+  + PN+
Sbjct: 121 DLEKETVDFVDNYDGTEKKPDVMPTKIPNL 150


>gi|36988482|gb|AAQ87915.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/146 (59%), Positives = 116/146 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYD 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           NYDG+   P V+  + P +LVNG  G
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|190888754|gb|ACE96002.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 159

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 119/159 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GI
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGI 159


>gi|38327349|gb|AAR17702.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327351|gb|AAR17703.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327407|gb|AAR17731.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327409|gb|AAR17732.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 119/150 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|327179192|gb|AEA30139.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 114/148 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHNLTEVI 148


>gi|192382604|gb|ACF04323.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 118/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|194360503|gb|ACF57899.1| DNA gyrase A subunit [Actinomyces gerencseriae]
          Length = 188

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +++VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EESVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVASGVQWFLE 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD      L++L+E + GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPDASREELLESLIERVPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVGGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|36988477|gb|AAQ87914.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/147 (59%), Positives = 116/147 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + P +LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|290790184|pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
 gi|290790185|pdb|3L6V|B Chain B, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
          Length = 370

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 215/381 (56%), Gaps = 29/381 (7%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L
Sbjct: 2   DLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLL 61

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV  
Sbjct: 62  TFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFM 118

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT++G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  
Sbjct: 119 ATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGE 178

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   GR + GVRGI LAKG++V+S+ +   A    DE    ++  SA+  + + D  
Sbjct: 179 STVRSM-GRTATGVRGIRLAKGEEVVSLIVSERAGGVEDE----VEDESAEEVVETTDGA 233

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           E   +  D +  G+++            +ILT +E G+GKRT   ++    R  +G+   
Sbjct: 234 EPAVI--DVADNGDVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGI 279

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E+
Sbjct: 280 QTTERN--GKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEK 337

Query: 891 VVSVERIRES-----EIVDEA 906
           + +VER+  S     ++VDEA
Sbjct: 338 LQAVERLDASLEEPEDVVDEA 358


>gi|190888734|gb|ACE95992.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 119/158 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|327179194|gb|AEA30140.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/147 (61%), Positives = 113/147 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SL
Sbjct: 4   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSL 63

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 64  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 123

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTH 193
           +  + PN+LVNG  GIAVGMATNIP H
Sbjct: 124 MPTKIPNLLVNGSSGIAVGMATNIPPH 150


>gi|192382562|gb|ACF04302.1| GyrA [Neisseria meningitidis]
 gi|192382564|gb|ACF04303.1| GyrA [Neisseria meningitidis]
 gi|192382566|gb|ACF04304.1| GyrA [Neisseria meningitidis]
 gi|192382568|gb|ACF04305.1| GyrA [Neisseria meningitidis]
 gi|192382570|gb|ACF04306.1| GyrA [Neisseria meningitidis]
 gi|192382572|gb|ACF04307.1| GyrA [Neisseria meningitidis]
 gi|192382574|gb|ACF04308.1| GyrA [Neisseria meningitidis]
 gi|192382576|gb|ACF04309.1| GyrA [Neisseria meningitidis]
 gi|192382578|gb|ACF04310.1| GyrA [Neisseria meningitidis]
 gi|192382580|gb|ACF04311.1| GyrA [Neisseria meningitidis]
 gi|192382616|gb|ACF04329.1| GyrA [Neisseria meningitidis]
 gi|192382618|gb|ACF04330.1| GyrA [Neisseria lactamica]
 gi|192382624|gb|ACF04333.1| GyrA [Neisseria lactamica]
 gi|192382626|gb|ACF04334.1| GyrA [Neisseria lactamica]
 gi|192382632|gb|ACF04337.1| GyrA [Neisseria lactamica]
 gi|192382634|gb|ACF04338.1| GyrA [Neisseria lactamica]
 gi|192382636|gb|ACF04339.1| GyrA [Neisseria meningitidis]
 gi|192382638|gb|ACF04340.1| GyrA [Neisseria meningitidis]
 gi|192382640|gb|ACF04341.1| GyrA [Neisseria meningitidis]
 gi|192382642|gb|ACF04342.1| GyrA [Neisseria meningitidis]
 gi|192382646|gb|ACF04344.1| GyrA [Neisseria meningitidis]
 gi|192382648|gb|ACF04345.1| GyrA [Neisseria meningitidis]
 gi|192382654|gb|ACF04348.1| GyrA [Neisseria meningitidis]
 gi|192382656|gb|ACF04349.1| GyrA [Neisseria meningitidis]
 gi|192382660|gb|ACF04351.1| GyrA [Neisseria meningitidis]
 gi|192382662|gb|ACF04352.1| GyrA [Neisseria meningitidis]
 gi|192382664|gb|ACF04353.1| GyrA [Neisseria meningitidis]
 gi|192382666|gb|ACF04354.1| GyrA [Neisseria meningitidis]
 gi|192382668|gb|ACF04355.1| GyrA [Neisseria meningitidis]
 gi|192382670|gb|ACF04356.1| GyrA [Neisseria meningitidis]
 gi|192382672|gb|ACF04357.1| GyrA [Neisseria meningitidis]
 gi|192382674|gb|ACF04358.1| GyrA [Neisseria meningitidis]
 gi|192382676|gb|ACF04359.1| GyrA [Neisseria meningitidis]
 gi|192382678|gb|ACF04360.1| GyrA [Neisseria meningitidis]
 gi|192382680|gb|ACF04361.1| GyrA [Neisseria meningitidis]
 gi|192382682|gb|ACF04362.1| GyrA [Neisseria meningitidis]
 gi|192382684|gb|ACF04363.1| GyrA [Neisseria meningitidis]
 gi|192382686|gb|ACF04364.1| GyrA [Neisseria meningitidis]
 gi|192382688|gb|ACF04365.1| GyrA [Neisseria meningitidis]
 gi|192382690|gb|ACF04366.1| GyrA [Neisseria meningitidis]
 gi|192382692|gb|ACF04367.1| GyrA [Neisseria meningitidis]
 gi|192382694|gb|ACF04368.1| GyrA [Neisseria meningitidis]
 gi|192382696|gb|ACF04369.1| GyrA [Neisseria meningitidis]
 gi|192382698|gb|ACF04370.1| GyrA [Neisseria meningitidis]
 gi|192382700|gb|ACF04371.1| GyrA [Neisseria meningitidis]
 gi|192382702|gb|ACF04372.1| GyrA [Neisseria meningitidis]
 gi|192382704|gb|ACF04373.1| GyrA [Neisseria meningitidis]
 gi|192382706|gb|ACF04374.1| GyrA [Neisseria meningitidis]
 gi|192382708|gb|ACF04375.1| GyrA [Neisseria lactamica]
 gi|192382710|gb|ACF04376.1| GyrA [Neisseria meningitidis]
 gi|192382712|gb|ACF04377.1| GyrA [Neisseria meningitidis]
 gi|192382716|gb|ACF04379.1| GyrA [Neisseria lactamica]
 gi|192382718|gb|ACF04380.1| GyrA [Neisseria lactamica]
 gi|192382720|gb|ACF04381.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|320540723|ref|ZP_08040331.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029214|gb|EFW11285.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 162

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 123/162 (75%), Gaps = 1/162 (0%)

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG  GIAVGMATNIP HNL EV++GC+A
Sbjct: 1   DLEKETVDFVPNYDGTEQIPAVMPAKIPNLLINGASGIAVGMATNIPPHNLSEVINGCLA 60

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
            ID+ +I ++ LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + +E  +   R
Sbjct: 61  YIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAEVESDAKTGR 120

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           E I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+
Sbjct: 121 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 162


>gi|116876157|gb|ABK30938.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876159|gb|ABK30939.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876163|gb|ABK30941.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735118|gb|ACF20068.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  197 bits (502), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 94/156 (60%), Positives = 115/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHGN++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGNSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|38327353|gb|AAR17704.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327405|gb|AAR17730.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 118/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|192382620|gb|ACF04331.1| GyrA [Neisseria lactamica]
 gi|192382622|gb|ACF04332.1| GyrA [Neisseria lactamica]
 gi|192382630|gb|ACF04336.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELRNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|47419992|gb|AAT27348.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/278 (41%), Positives = 170/278 (61%), Gaps = 26/278 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V
Sbjct: 2   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTV 61

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +        
Sbjct: 62  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAK-------- 113

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 114 ------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLD 155

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 156 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 215

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH
Sbjct: 216 KRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTH 253


>gi|190888748|gb|ACE95999.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 118/158 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|192382628|gb|ACF04335.1| GyrA [Neisseria lactamica]
 gi|192382644|gb|ACF04343.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  197 bits (501), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|190888752|gb|ACE96001.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/158 (56%), Positives = 118/158 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|17887472|gb|AAL40896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 149

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 115/149 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           PN+LVNG  GIAVGMATNIP H+L EV++
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHDLTEVIN 149


>gi|161511951|emb|CAP45395.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 113/146 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 67

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNI 190
            V+  + PN+LVNG  GIAVGMATN 
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNF 153


>gi|149346166|gb|ABR23654.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 143

 Score =  197 bits (500), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 113/143 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNYDG+
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIA 183
              P V+  + PN+LVNG  GIA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIA 143


>gi|161511945|emb|CAP45392.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/146 (61%), Positives = 114/146 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 67

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNI 190
            V+  + PN+LVNG  GIAVGMATN 
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNF 153


>gi|37999018|dbj|BAD00079.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 176

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|294992615|gb|ADF57434.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 119/164 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|36988433|gb|AAQ87910.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|36988448|gb|AAQ87911.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 115/146 (78%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYN 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           NYDG+   P V+  + P +LVNG  G
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|226451953|gb|ACO59156.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451959|gb|ACO59159.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 109/138 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDG 201
           VGMATNIP HNL EV+DG
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|194360501|gb|ACF57898.1| DNA gyrase A subunit [Actinomyces odontolyticus]
          Length = 188

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           ++ VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL E+  G    +D
Sbjct: 1   EECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNLRELARGVEWALD 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +P+      L+AL+++I GPDFPTGA ILGR GI++AY TGRGSI  R V  +E+  G R
Sbjct: 61  HPEATREELLEALIKLIPGPDFPTGATILGRKGIEDAYRTGRGSITQRAVVSVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQIGGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|38327355|gb|AAR17705.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327361|gb|AAR17708.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327367|gb|AAR17711.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327375|gb|AAR17715.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327377|gb|AAR17716.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327381|gb|AAR17718.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327385|gb|AAR17720.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327389|gb|AAR17722.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327391|gb|AAR17723.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327403|gb|AAR17729.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 118/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|330939845|gb|EGH43078.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 578

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 180/624 (28%), Positives = 295/624 (47%), Gaps = 79/624 (12%)

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRT 235
           NG  GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R 
Sbjct: 1   NGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRA 60

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            +   Y TGRGS+ +R V  IE   GD   I+VT +P+QV+ A +LE+IA  ++ K++  
Sbjct: 61  DLLKIYETGRGSVRMRAVYRIE--DGD---IIVTSLPHQVSGAKVLEQIAAQMQAKKLPM 115

Query: 296 IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLF--SVNMVALNGYKPER 351
           +ADLRDESD +    ++ + R      D ++  L+  T L+S +  ++N++ L+G KP+ 
Sbjct: 116 VADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDG-KPQL 174

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+
Sbjct: 175 KNLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPK 234

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
               EL+ R                            LSE+Q   IL+ RL +L  L   
Sbjct: 235 A---ELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEM 265

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMED 529
            +R+E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV       + +
Sbjct: 266 KLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSE 325

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVST 585
            + +  E + V +S  G+V            R  KG     +G+  +  D      I  +
Sbjct: 326 NELMPTEPVTVVLSEKGWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRS 373

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           +   +F  S G  Y      LP  S + +G+ L   L    G     ++  PED++    
Sbjct: 374 NQFAVFIDSTGRSYSVAAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA---- 426

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLG 703
           LYV+ A+  G     K  D    N++GK  + L +  +++        ++N +   T  G
Sbjct: 427 LYVI-ASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEG 485

Query: 704 QCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           + + F IS +       G   +G+ G  +A  ++ ++   V+   A           + A
Sbjct: 486 RLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQA 537

Query: 761 QRRLISGDTEEITSLKNDSSVEGN 784
            +R +S   E++   K +    GN
Sbjct: 538 GKRTLSLKPEDLEHYKGERGRRGN 561


>gi|192382658|gb|ACF04350.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GR +PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRELPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|37999020|dbj|BAD00080.1| DNA topoisomerase IV subunit C [Streptococcus canis]
          Length = 176

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|297242245|gb|ADI24795.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242263|gb|ADI24804.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 132/181 (72%), Gaps = 4/181 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 250 I 250
           +
Sbjct: 181 V 181


>gi|218672863|ref|ZP_03522532.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 125

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/124 (70%), Positives = 106/124 (85%), Gaps = 1/124 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER-YTECRLQKAAHF 141
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPA    +     ++  + 
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAGRTLHPNAGSKRPPNS 121

Query: 142 LLDD 145
           LLDD
Sbjct: 122 LLDD 125


>gi|308199035|dbj|BAJ22652.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199041|dbj|BAJ22655.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 158

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 115/156 (73%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+
Sbjct: 61  GNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNL 120

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           L+NG  GIAVGMATNIP H+L E++DG + ++D+ D
Sbjct: 121 LLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKD 156


>gi|47419996|gb|AAT27350.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/281 (39%), Positives = 171/281 (60%), Gaps = 26/281 (9%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RR
Sbjct: 1   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRR 60

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +            
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------ 108

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL 
Sbjct: 109 --------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILK 154

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP
Sbjct: 155 SETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVP 214

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +
Sbjct: 215 SKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 255


>gi|213619192|ref|ZP_03373018.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 318

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 182/315 (57%), Gaps = 19/315 (6%)

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           + S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK 
Sbjct: 1   MGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKY 60

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 61  QPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 120

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F +   
Sbjct: 121 RGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPRS 177

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRGI LA
Sbjct: 178 AGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRGIKLA 236

Query: 731 KGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK---NDSS 780
             D+V+S+       AI+      Y +R    ++ +  R      T+ + S+K    + S
Sbjct: 237 GDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTERNGS 291

Query: 781 VEGNISEERCQELKL 795
           V G +  + C ++ +
Sbjct: 292 VVGAVQVDDCDQIMM 306


>gi|138999588|dbj|BAF51190.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999590|dbj|BAF51191.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999592|dbj|BAF51192.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999598|dbj|BAF51193.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999602|dbj|BAF51194.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999604|dbj|BAF51195.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999606|dbj|BAF51196.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999609|dbj|BAF51197.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999611|dbj|BAF51198.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999614|dbj|BAF51199.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999616|dbj|BAF51200.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999623|dbj|BAF51202.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999625|dbj|BAF51203.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999627|dbj|BAF51204.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999633|dbj|BAF51205.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999635|dbj|BAF51206.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999637|dbj|BAF51207.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999642|dbj|BAF51208.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999644|dbj|BAF51209.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999649|dbj|BAF51210.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999651|dbj|BAF51211.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999653|dbj|BAF51212.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999658|dbj|BAF51213.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999660|dbj|BAF51214.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999662|dbj|BAF51215.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999664|dbj|BAF51216.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999666|dbj|BAF51217.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999668|dbj|BAF51218.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999695|dbj|BAF51227.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999701|dbj|BAF51228.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999705|dbj|BAF51229.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999707|dbj|BAF51230.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999711|dbj|BAF51231.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999731|dbj|BAF51237.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999733|dbj|BAF51238.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999739|dbj|BAF51239.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999760|dbj|BAF51245.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000003|dbj|BAF51146.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000005|dbj|BAF51147.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000008|dbj|BAF51148.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000010|dbj|BAF51149.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000012|dbj|BAF51150.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000017|dbj|BAF51151.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000022|dbj|BAF51152.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000024|dbj|BAF51153.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000030|dbj|BAF51154.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000032|dbj|BAF51155.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000034|dbj|BAF51156.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000038|dbj|BAF51157.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000040|dbj|BAF51158.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000045|dbj|BAF51159.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000050|dbj|BAF51160.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000052|dbj|BAF51161.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000058|dbj|BAF51162.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000060|dbj|BAF51163.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000064|dbj|BAF51164.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000066|dbj|BAF51165.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000068|dbj|BAF51166.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000071|dbj|BAF51167.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000073|dbj|BAF51168.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000079|dbj|BAF51169.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000081|dbj|BAF51170.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000087|dbj|BAF51171.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000089|dbj|BAF51172.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000092|dbj|BAF51173.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000097|dbj|BAF51174.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000099|dbj|BAF51175.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000104|dbj|BAF51176.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000106|dbj|BAF51177.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000108|dbj|BAF51178.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000114|dbj|BAF51179.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000116|dbj|BAF51180.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000119|dbj|BAF51181.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000121|dbj|BAF51182.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000123|dbj|BAF51183.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000128|dbj|BAF51184.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000130|dbj|BAF51185.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000133|dbj|BAF51186.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000135|dbj|BAF51187.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000141|dbj|BAF51188.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000143|dbj|BAF51189.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538783|dbj|BAG67626.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538785|dbj|BAG67627.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538787|dbj|BAG67628.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538789|dbj|BAG67629.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538791|dbj|BAG67630.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538793|dbj|BAG67631.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538795|dbj|BAG67632.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538797|dbj|BAG67633.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538799|dbj|BAG67634.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538801|dbj|BAG67635.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538803|dbj|BAG67636.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538805|dbj|BAG67637.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538807|dbj|BAG67638.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538809|dbj|BAG67639.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538811|dbj|BAG67640.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538813|dbj|BAG67641.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538815|dbj|BAG67642.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538817|dbj|BAG67643.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538819|dbj|BAG67644.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538821|dbj|BAG67645.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538823|dbj|BAG67646.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538825|dbj|BAG67647.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538827|dbj|BAG67648.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538829|dbj|BAG67649.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538831|dbj|BAG67650.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538833|dbj|BAG67651.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538835|dbj|BAG67652.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538837|dbj|BAG67653.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538839|dbj|BAG67654.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538841|dbj|BAG67655.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538843|dbj|BAG67656.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538845|dbj|BAG67657.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538847|dbj|BAG67658.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538849|dbj|BAG67659.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538851|dbj|BAG67660.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538853|dbj|BAG67661.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538855|dbj|BAG67662.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538857|dbj|BAG67663.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538859|dbj|BAG67664.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538861|dbj|BAG67665.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538863|dbj|BAG67666.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538865|dbj|BAG67667.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538867|dbj|BAG67668.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538869|dbj|BAG67669.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538871|dbj|BAG67670.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538873|dbj|BAG67671.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538875|dbj|BAG67672.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538877|dbj|BAG67673.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538879|dbj|BAG67674.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538881|dbj|BAG67675.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538883|dbj|BAG67676.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538885|dbj|BAG67677.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538887|dbj|BAG67678.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538889|dbj|BAG67679.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538891|dbj|BAG67680.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538893|dbj|BAG67681.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538895|dbj|BAG67682.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538897|dbj|BAG67683.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538899|dbj|BAG67684.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538901|dbj|BAG67685.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538903|dbj|BAG67686.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538905|dbj|BAG67687.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538907|dbj|BAG67688.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538909|dbj|BAG67689.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538911|dbj|BAG67690.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538913|dbj|BAG67691.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538915|dbj|BAG67692.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538917|dbj|BAG67693.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538919|dbj|BAG67694.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538921|dbj|BAG67695.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538923|dbj|BAG67696.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538925|dbj|BAG67697.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538927|dbj|BAG67698.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538929|dbj|BAG67699.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538931|dbj|BAG67700.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538933|dbj|BAG67701.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538935|dbj|BAG67702.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538937|dbj|BAG67703.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538939|dbj|BAG67704.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538941|dbj|BAG67705.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538943|dbj|BAG67706.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538945|dbj|BAG67707.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538947|dbj|BAG67708.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538949|dbj|BAG67709.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539001|dbj|BAG67735.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539003|dbj|BAG67736.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539005|dbj|BAG67737.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/145 (60%), Positives = 114/145 (78%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|297242265|gb|ADI24805.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 131/181 (72%), Gaps = 4/181 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 250 I 250
           +
Sbjct: 181 V 181


>gi|138999748|dbj|BAF51242.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/145 (60%), Positives = 114/145 (78%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDALKLVMDNPDVTTRDLMEVLPG 145


>gi|294992609|gb|ADF57431.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992613|gb|ADF57433.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 119/164 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|37999026|dbj|BAD00083.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp. equi]
 gi|197941219|gb|ACH78329.1| DNA topoisomerase [Streptococcus equi subsp. zooepidemicus]
          Length = 176

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 122/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|192382714|gb|ACF04378.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYHTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|108937148|gb|ABG23386.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937150|gb|ABG23387.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937152|gb|ABG23388.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937154|gb|ABG23389.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937156|gb|ABG23390.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937158|gb|ABG23391.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876161|gb|ABK30940.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 115/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|192382650|gb|ACF04346.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDG   EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGREHEPLVLPTRFP 148


>gi|116048067|gb|ABJ53249.1| GyrA [Pseudomonas andersonii]
          Length = 139

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/139 (63%), Positives = 110/139 (79%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR 
Sbjct: 1   LKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ 
Sbjct: 61  LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMA 187
            + PN+L+NG  GIAVGMA
Sbjct: 121 TKVPNLLINGSSGIAVGMA 139


>gi|193735112|gb|ACF20065.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG++  Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|138999757|dbj|BAF51244.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 114/145 (78%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP++L +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLILPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|226451955|gb|ACO59157.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451957|gb|ACO59158.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451961|gb|ACO59160.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451963|gb|ACO59161.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451965|gb|ACO59162.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451967|gb|ACO59163.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451969|gb|ACO59164.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451973|gb|ACO59166.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451975|gb|ACO59167.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451977|gb|ACO59168.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451979|gb|ACO59169.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451981|gb|ACO59170.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451983|gb|ACO59171.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451985|gb|ACO59172.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451987|gb|ACO59173.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451989|gb|ACO59174.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451991|gb|ACO59175.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451993|gb|ACO59176.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451995|gb|ACO59177.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451997|gb|ACO59178.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 108/138 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDG 201
           VGMATNIP HNL EV+DG
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|167861164|gb|ACA05285.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 113/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HNL EV++GC+A
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|297242257|gb|ADI24801.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 132/181 (72%), Gaps = 4/181 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARAVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 250 I 250
           +
Sbjct: 181 L 181


>gi|193735122|gb|ACF20070.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYQ 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|311350453|gb|ADP92423.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|294992605|gb|ADF57429.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 119/164 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|193735128|gb|ACF20073.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 113/156 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG++  Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYQ 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|192382582|gb|ACF04312.1| GyrA [Neisseria gonorrhoeae]
 gi|192382584|gb|ACF04313.1| GyrA [Neisseria gonorrhoeae]
 gi|192382586|gb|ACF04314.1| GyrA [Neisseria gonorrhoeae]
 gi|192382588|gb|ACF04315.1| GyrA [Neisseria gonorrhoeae]
 gi|192382590|gb|ACF04316.1| GyrA [Neisseria gonorrhoeae]
 gi|192382592|gb|ACF04317.1| GyrA [Neisseria gonorrhoeae]
 gi|192382594|gb|ACF04318.1| GyrA [Neisseria gonorrhoeae]
 gi|192382596|gb|ACF04319.1| GyrA [Neisseria gonorrhoeae]
 gi|192382598|gb|ACF04320.1| GyrA [Neisseria gonorrhoeae]
 gi|192382600|gb|ACF04321.1| GyrA [Neisseria gonorrhoeae]
 gi|192382602|gb|ACF04322.1| GyrA [Neisseria gonorrhoeae]
 gi|192382606|gb|ACF04324.1| GyrA [Neisseria gonorrhoeae]
 gi|192382608|gb|ACF04325.1| GyrA [Neisseria gonorrhoeae]
 gi|192382610|gb|ACF04326.1| GyrA [Neisseria gonorrhoeae]
 gi|192382612|gb|ACF04327.1| GyrA [Neisseria gonorrhoeae]
 gi|192382614|gb|ACF04328.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|38327357|gb|AAR17706.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327359|gb|AAR17707.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327363|gb|AAR17709.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327365|gb|AAR17710.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327369|gb|AAR17712.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327371|gb|AAR17713.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327373|gb|AAR17714.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327379|gb|AAR17717.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327383|gb|AAR17719.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327387|gb|AAR17721.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327393|gb|AAR17724.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327395|gb|AAR17725.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327397|gb|AAR17726.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327399|gb|AAR17727.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327401|gb|AAR17728.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/150 (57%), Positives = 117/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|138999618|dbj|BAF51201.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 88/145 (60%), Positives = 114/145 (78%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAIEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|226451971|gb|ACO59165.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 108/138 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDG 201
           VGMATNIP HNL EV+DG
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|37999024|dbj|BAD00082.1| DNA topoisomerase IV subunit C [Streptococcus porcinus]
          Length = 176

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + + 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A YPN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 175


>gi|36988470|gb|AAQ87913.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 145

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 114/145 (78%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PN
Sbjct: 61  IVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGG 181
           YDG+   P V+  + P +LVNG  G
Sbjct: 121 YDGTEMIPAVMPTKVPTLLVNGSSG 145


>gi|193735114|gb|ACF20066.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735120|gb|ACF20069.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735126|gb|ACF20072.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYG 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|194360505|gb|ACF57900.1| DNA gyrase A subunit [Actinomyces meyeri]
          Length = 188

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 105/189 (55%), Positives = 134/189 (70%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           ++ VDF+ NYDG  +EP +L AR+PN+L NG  GIAVGMAT IP HNL EV  G    + 
Sbjct: 1   EECVDFQDNYDGRNKEPTILPARFPNLLANGSEGIAVGMATRIPPHNLREVARGVEWALA 60

Query: 208 NPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +P+      L+AL+ II GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+  G R
Sbjct: 61  HPEATREELLEALLTIIPGPDFPTGATILGRKGIEDAYRTGRGSITQRAVVNVEEIQG-R 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQISGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|167861162|gb|ACA05284.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 114/147 (77%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HN+ EV++GC+A
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLA 147


>gi|193735124|gb|ACF20071.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735134|gb|ACF20076.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+ + Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDNSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735116|gb|ACF20067.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYA 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|61657493|emb|CAI44405.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga sp. KOL6]
          Length = 652

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 208/408 (50%), Gaps = 61/408 (14%)

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E  +IL    ++  I+K+E   +K+    PRRT+I +  L  + E+ I  ED+V+T+
Sbjct: 295 KISEVKEILEKDVKVKEIMKKEFKYLKERYGDPRRTKITDEELRYDMEELIAEEDIVITL 354

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+K  PLS YR+QRRGGKG +   + ++D V  + +    +S LF ++LG  Y  K
Sbjct: 355 SHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKAYVLK 414

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +++       RG+ +   L+L + E++  + P      +     +V  TKHG ++R  L
Sbjct: 415 NYQIETTGRNTRGRHISAFLNLEETEKVVALAPL-----NGKGKDLVIVTKHGKIKRTAL 469

Query: 663 SDFIQINRS-GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F     + G  A+++++ DEI+S      E   +++ TKLG  +RFP+S +R   GRN
Sbjct: 470 EEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRM-GRN 528

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ I L   D+V+SM +V                                     S 
Sbjct: 529 AAGVQAIKLQPDDEVVSMDVV------------------------------------PSE 552

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            EG                ILTV+EKGFGKRT    +RI  R G G+R  ++S + + G 
Sbjct: 553 NEGE---------------ILTVTEKGFGKRTPVELYRIQKRGGTGLR--NISDVKKTGY 595

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +VAV  V  +++I++V+  G +IR+PV++I I  R TKGV +     D
Sbjct: 596 VVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELGDD 643


>gi|167861154|gb|ACA05280.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 113/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HNL EV++GC+A
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|239737043|gb|ACS13101.1| ParC [Pseudomonas putida]
          Length = 142

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 111/142 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M ++G + NK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMSELGNDCNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             R PN+LVNG  GIAVGMATN
Sbjct: 121 PTRIPNLLVNGSSGIAVGMATN 142


>gi|37999014|dbj|BAD00077.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 176

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 122/174 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|224458668|gb|ACN43197.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 239

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 113/259 (43%), Positives = 164/259 (63%), Gaps = 26/259 (10%)

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +E+I+VTE+PYQVNK  ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+V
Sbjct: 1   KERIIVTELPYQVNKGNLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANV 60

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+ RRT Y L KA  
Sbjct: 61  ILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEA 120

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAH+L GL +A+ +LD V+ +IR S   E AR  L+++                      
Sbjct: 121 RAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ---------------------- 158

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II+
Sbjct: 159 ----FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIR 214

Query: 503 QELLSVKDELDTPRRTRIV 521
           +EL  +K+  +  RRT IV
Sbjct: 215 EELTEIKERFNDERRTEIV 233


>gi|226452045|gb|ACO59202.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452047|gb|ACO59203.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452049|gb|ACO59204.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452051|gb|ACO59205.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452053|gb|ACO59206.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452055|gb|ACO59207.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452061|gb|ACO59210.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452063|gb|ACO59211.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452075|gb|ACO59217.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452077|gb|ACO59218.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452079|gb|ACO59219.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452085|gb|ACO59222.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452087|gb|ACO59223.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452089|gb|ACO59224.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 130/173 (75%), Gaps = 3/173 (1%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE +L K A  LL
Sbjct: 65  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFADVLL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 124 GELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|167861158|gb|ACA05282.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 113/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HNL EV++GC+A
Sbjct: 121 GASGIAVGMATNIPPHNLTEVINGCLA 147


>gi|108937160|gb|ABG23392.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735130|gb|ACF20074.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+ + Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDRSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|294992611|gb|ADF57432.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDF 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992603|gb|ADF57428.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 119/164 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|37999016|dbj|BAD00078.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 176

 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|138999671|dbj|BAF51219.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999673|dbj|BAF51220.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999675|dbj|BAF51221.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999677|dbj|BAF51222.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999679|dbj|BAF51223.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999685|dbj|BAF51224.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999687|dbj|BAF51225.1| DNA gyrase subunit A [Streptococcus mutans NN2025]
 gi|138999689|dbj|BAF51226.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999713|dbj|BAF51232.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538951|dbj|BAG67710.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538953|dbj|BAG67711.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538955|dbj|BAG67712.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538957|dbj|BAG67713.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538959|dbj|BAG67714.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538961|dbj|BAG67715.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538963|dbj|BAG67716.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538965|dbj|BAG67717.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538967|dbj|BAG67718.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538969|dbj|BAG67719.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538971|dbj|BAG67720.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538973|dbj|BAG67721.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538975|dbj|BAG67722.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538977|dbj|BAG67723.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538979|dbj|BAG67724.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538981|dbj|BAG67725.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538983|dbj|BAG67726.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538985|dbj|BAG67727.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538987|dbj|BAG67728.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538989|dbj|BAG67729.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538991|dbj|BAG67730.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538993|dbj|BAG67731.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538995|dbj|BAG67732.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538997|dbj|BAG67733.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538999|dbj|BAG67734.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 113/145 (77%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D     +DNPD+    LME++ G
Sbjct: 121 TIDAVKLAMDNPDVTTRDLMEVLPG 145


>gi|138999741|dbj|BAF51240.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999746|dbj|BAF51241.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 114/145 (78%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ +MAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVQMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|161511949|emb|CAP45394.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 151

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 112/144 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMAT 188
            V+  + PN+LVNG  GIAVGMAT
Sbjct: 121 DVMPTKIPNLLVNGSSGIAVGMAT 144


>gi|167945163|ref|ZP_02532237.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 210

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 102/210 (48%), Positives = 145/210 (69%), Gaps = 9/210 (4%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           MAQ +S R  L++GQGN+GS D DP   AA RYTE RL   +  LL +LG+ TV+++PN+
Sbjct: 2   MAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRYTESRLTPYSQVLLSELGQGTVEWQPNF 60

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ QEP +L AR PNVL+NG  GIAVGMAT+IP HNL EV   CV ++++P   LD L+
Sbjct: 61  DGTLQEPSLLPARLPNVLLNGSTGIAVGMATDIPPHNLREVAAACVHLLESPKASLDDLL 120

Query: 218 EIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           + I+GPD+PT A +I     I+  Y +G+GSI +R  +  E+  G   +I+VT +P+QV+
Sbjct: 121 DHIKGPDYPTEAEIITPPEEIRKIYVSGKGSIRMR--ARYEREQG---EIIVTTLPHQVS 175

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            A +LE+IA  ++ K++  + DLRDESD +
Sbjct: 176 GARVLEQIAAQMQAKKLPMVEDLRDESDHE 205


>gi|47419976|gb|AAT27340.1| DNA gyrase A [Campylobacter jejuni]
          Length = 274

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 181/300 (60%), Gaps = 26/300 (8%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT 
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S 
Sbjct: 107 ------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSE 154

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP  
Sbjct: 155 TLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSK 214

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+
Sbjct: 215 QYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T++ +G+ KR  S  +    R GKG  A      + I +    F  N +D ++ V
Sbjct: 196 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 252

Query: 857 SDKGTLIRVPVNEIRIASRATK 878
           +D+G L  + V +I   SR  K
Sbjct: 253 TDRGQLYWLKVYKIPEGSRTAK 274


>gi|294992607|gb|ADF57430.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (491), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDF 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|208972181|gb|ACI32674.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 138

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 112/136 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGS 160
           DL K+TVDF  NYDG+
Sbjct: 121 DLEKETVDFVDNYDGT 136


>gi|33338052|gb|AAQ13648.1|AF173981_1 DNA gyrase [Pasteurella multocida]
          Length = 143

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/142 (64%), Positives = 109/142 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG+ A+YD L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDIAVYDTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVGMAT 188
           L  + P +LVNG  GIAVGMAT
Sbjct: 121 LPTKVPALLVNGSSGIAVGMAT 142


>gi|311350429|gb|ADP92412.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350445|gb|ADP92419.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|308813249|ref|XP_003083931.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
 gi|116055813|emb|CAL57898.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 115/154 (74%), Gaps = 1/154 (0%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           +KPVHRRILFGM ++G+  +K + KCAR+ G+V+GK+HPHG+ A+Y+AL R+AQD+S+  
Sbjct: 31  VKPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSA 90

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            L++G GNFGS+D DPPAA RYTECRL K +   LL D+  + V F   +DGS  EP VL
Sbjct: 91  PLVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVL 150

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
            AR PN+L+NG  GIAV +ATN+  HNLGE + G
Sbjct: 151 PARVPNLLINGSSGIAVAVATNMAPHNLGEALSG 184



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 27/295 (9%)

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIE+KRG  A  +L +LY+ T L+  ++VN VAL G KP    L  +L  F+ FR 
Sbjct: 205 GMRVVIEIKRGHDASTVLAELYKKTRLEVNYNVNNVALVGNKPTVMPLRDMLDEFIKFRV 264

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + RRT+++L KA+DR H++ G A  + + D VV+IIR S +  +A ++L ++      
Sbjct: 265 DTIERRTRFMLGKAQDRKHLVEGFAFVLTDADGVVKIIRGSKDGPSAAKKLREKHG---- 320

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q+ AIL + L RLTGL  D +  EL  L  +I+ 
Sbjct: 321 ----------------------LSEIQSDAILAMPLRRLTGLEADKLDAELKDLNGQIEY 358

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
              +L+ +S+++ ++ QE    K      RRT + + G  D   ED    +D ++T+S  
Sbjct: 359 YQGLLNDKSKVIDVLIQEAQEAKTAFARERRTTLEQTGPSDGVIEDEGPPKDNIITLSER 418

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           GYVKRV  + + AQ RG +G+    +R  D ++    +  H S    S +   +K
Sbjct: 419 GYVKRVCPTNFGAQARGTRGKRMSKLRANDELSTGDALDGHRSKFCSSPIAVEFK 473


>gi|167861160|gb|ACA05283.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 113/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+   P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTESIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HNL EV++GC+A
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|311350421|gb|ADP92408.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350427|gb|ADP92411.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350433|gb|ADP92414.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350435|gb|ADP92415.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350437|gb|ADP92416.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350439|gb|ADP92417.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350442|gb|ADP92418.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350449|gb|ADP92421.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350451|gb|ADP92422.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350455|gb|ADP92424.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|167861166|gb|ACA05286.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 113/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HN+ EV++GC+A
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLA 147


>gi|297242281|gb|ADI24813.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|37999028|dbj|BAD00084.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/174 (52%), Positives = 121/174 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|226452057|gb|ACO59208.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452059|gb|ACO59209.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 129/173 (74%), Gaps = 3/173 (1%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE +L K A  LL
Sbjct: 65  HPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFADVLL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 124 GELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|294992579|gb|ADF57416.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992581|gb|ADF57417.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992587|gb|ADF57420.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992591|gb|ADF57422.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992599|gb|ADF57426.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 119/164 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|226452065|gb|ACO59212.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452067|gb|ACO59213.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452069|gb|ACO59214.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452071|gb|ACO59215.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452073|gb|ACO59216.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452081|gb|ACO59220.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452083|gb|ACO59221.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 129/173 (74%), Gaps = 3/173 (1%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G  D DP   AA RYTE +L K A  LL
Sbjct: 65  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGVPD-DPKSFAAMRYTEAKLSKFADVLL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 124 GELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|297242243|gb|ADI24794.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 129/183 (70%), Gaps = 4/183 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG 
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179

Query: 248 IVI 250
             +
Sbjct: 180 HTV 182


>gi|297242237|gb|ADI24791.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|138999750|dbj|BAF51243.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 113/145 (77%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HN GE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNSGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|311350423|gb|ADP92409.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350425|gb|ADP92410.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350431|gb|ADP92413.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350447|gb|ADP92420.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|33338048|gb|AAQ13646.1|AF173979_1 DNA gyrase [Pasteurella multocida]
          Length = 141

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/141 (64%), Positives = 109/141 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVGMA 187
           L  + P +LVNG  GIAVGMA
Sbjct: 121 LPTKVPALLVNGSSGIAVGMA 141


>gi|167861148|gb|ACA05277.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861150|gb|ACA05278.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861152|gb|ACA05279.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 113/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAVGMATNIP HNL EV++GC+A
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLA 147


>gi|138999717|dbj|BAF51233.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999722|dbj|BAF51234.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999724|dbj|BAF51235.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999729|dbj|BAF51236.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539007|dbj|BAG67738.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539009|dbj|BAG67739.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539011|dbj|BAG67740.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539013|dbj|BAG67741.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539015|dbj|BAG67742.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539017|dbj|BAG67743.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539019|dbj|BAG67744.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539021|dbj|BAG67745.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539023|dbj|BAG67746.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539025|dbj|BAG67747.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539027|dbj|BAG67748.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539029|dbj|BAG67749.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539031|dbj|BAG67750.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539033|dbj|BAG67751.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539035|dbj|BAG67752.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539037|dbj|BAG67753.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539039|dbj|BAG67754.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539041|dbj|BAG67755.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539043|dbj|BAG67756.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539045|dbj|BAG67757.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539047|dbj|BAG67758.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539049|dbj|BAG67759.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539051|dbj|BAG67760.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539053|dbj|BAG67761.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  192 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 113/145 (77%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNP +    LME++ G
Sbjct: 121 TIDAVKLVMDNPYVTTRDLMEVLPG 145


>gi|119952841|ref|YP_945050.1| DNA topoisomerase IV subunit A [Borrelia turicatae 91E135]
 gi|119861612|gb|AAX17380.1| topoisomerase IV subunit A [Borrelia turicatae 91E135]
          Length = 628

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 182/336 (54%), Gaps = 29/336 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTPLAFEVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   + P+YDG   EP++  A+ P +LV G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITSYEPSYDGRNDEPLIFPAKIPVILVQGSEGIAVGMAAKILPHNFNEILSAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     +L         PDFPTG ++       N YA G G +++R  + IE T  D 
Sbjct: 177 SELLGESYEL--------YPDFPTGGIVDV-----NEYADGNGKVLVR--ARIEPTD-DN 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + I++ E+P+     +++  I   +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 221 KAILIKELPFGETTESLIASIERAIR-KNYIKVSSINDFT-TENVEIELTLPRGVYASEV 278

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + +LY YT+ Q   SVN++ L+   P  +T+  I+K
Sbjct: 279 IEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIK 314


>gi|37999022|dbj|BAD00081.1| DNA topoisomerase IV subunit C [Streptococcus iniae]
          Length = 176

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 122/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + + 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKYTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|36988462|gb|AAQ87912.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 144

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/144 (58%), Positives = 113/144 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNY
Sbjct: 61  VRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGG 181
           DG+   P V+  + P +LVNG  G
Sbjct: 121 DGTEMIPAVMPTKVPTLLVNGSSG 144


>gi|294992583|gb|ADF57418.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDP 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|297242227|gb|ADI24786.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242253|gb|ADI24799.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242267|gb|ADI24806.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242289|gb|ADI24817.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 130/183 (71%), Gaps = 4/183 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG 
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179

Query: 248 IVI 250
             +
Sbjct: 180 HTV 182


>gi|193735132|gb|ACF20075.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/156 (58%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPH +++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHCDSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|9081891|gb|AAF82628.1| topoisomerase II subunit A [Staphylococcus capitis]
          Length = 143

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 111/141 (78%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RY
Sbjct: 2   YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 62  TEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNI 121

Query: 191 PTHNLGEVVDGCVAVIDNPDI 211
           P HNL EV+DG +++  NPDI
Sbjct: 122 PPHNLTEVIDGVLSLSKNPDI 142


>gi|3411096|gb|AAC31147.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|297242225|gb|ADI24785.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242231|gb|ADI24788.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242235|gb|ADI24790.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|138999762|dbj|BAF51246.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 87/145 (60%), Positives = 113/145 (77%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K
Sbjct: 1   TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+ K+TVDF  N DGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 61  IAMEMLRDINKNTVDFADNCDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGE 120

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRG 222
            +D    V+DNPD+    LME++ G
Sbjct: 121 TIDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|297242305|gb|ADI24825.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|1296444|emb|CAA64979.1| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 148

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRI+  M +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S
Sbjct: 1   RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R  +++GQGNFG++DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPV
Sbjct: 61  QRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL   +PN+L NG  GIAVGMATNIP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|297242269|gb|ADI24807.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|294992589|gb|ADF57421.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDY 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|47420006|gb|AAT27355.1| DNA gyrase A [Campylobacter fetus]
          Length = 267

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 182/294 (61%), Gaps = 28/294 (9%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +++RDESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ 
Sbjct: 1   SEVRDESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLE 60

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +LK F+  R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  
Sbjct: 61  LLKLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDG 120

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM +                            LSE+Q+ AIL++RL++LTGL R+ +  E
Sbjct: 121 LMAK--------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAE 154

Query: 477 LNSLGIEIKECLD-ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           L  + +E+ E LD IL S + +  II+ ELL +K +   PR T IV+   D++ ED I  
Sbjct: 155 LKEI-LELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPN 213

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F   +H ++
Sbjct: 214 ENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTL 267


>gi|297242259|gb|ADI24802.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242261|gb|ADI24803.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|294992585|gb|ADF57419.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992593|gb|ADF57423.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ 
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDF 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|208972173|gb|ACI32670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972175|gb|ACI32671.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972179|gb|ACI32673.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 135

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 109/133 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGS 160
           K+TVDF  NYDG+
Sbjct: 121 KETVDFVDNYDGT 133


>gi|297242299|gb|ADI24822.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDILEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|187917917|ref|YP_001883480.1| DNA topoisomerase IV subunit A [Borrelia hermsii DAH]
 gi|119860765|gb|AAX16560.1| hypothetical protein BH0035 [Borrelia hermsii DAH]
          Length = 627

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 29/336 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVVGNAM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITSYEPSYDGRNNEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNEILSAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     +L         PDFPTG ++       N YA G G +++R  + IE T  D 
Sbjct: 177 SELLGESYEL--------YPDFPTGGIVDV-----NEYADGNGKVLVR--ARIEPTD-DN 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + I++ E+P+     +++  I   +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 221 KAILIKELPFGETTESLIASIERAIR-KNYIKVSSINDFT-TENVEIELTLPRGVYASEV 278

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + +LY YT+ Q   SVN++ L+   P  +T+  I+K
Sbjct: 279 IEKLYHYTNCQVSISVNLLLLSERYPVIYTITDIIK 314


>gi|203287507|ref|YP_002222522.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084727|gb|ACH94301.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 627

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 185/337 (54%), Gaps = 31/337 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTPLAFEVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNEILRAVK 176

Query: 204 AVIDNPDIDLDALMEIIR-GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +         + L E  +  PDFPTG ++       N YA G G +++R  + IE T+ D
Sbjct: 177 S---------ELLGEAYKLYPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE-TTDD 219

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + I++ E+P+     +++  I   +R K  + ++ + D +  +   + + L RG  A+ 
Sbjct: 220 NKAILIKELPFGETTESLIASIERAIR-KNYIKVSSINDFT-TENVEIELTLPRGVYANE 277

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           I+ +LY YT+ Q   SVN++ L+   P  +T+  I+K
Sbjct: 278 IIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIK 314


>gi|47419982|gb|AAT27343.1| DNA gyrase A [Campylobacter jejuni]
          Length = 261

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 175/287 (60%), Gaps = 26/287 (9%)

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+
Sbjct: 1   GIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRK 60

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +      
Sbjct: 61  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------ 114

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI  
Sbjct: 115 --------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIAR 154

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H G
Sbjct: 155 LEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRG 214

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           Y+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +
Sbjct: 215 YIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 261


>gi|294992595|gb|ADF57424.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 119/164 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|14289141|gb|AAK57747.1| topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 165

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/165 (55%), Positives = 123/165 (74%), Gaps = 3/165 (1%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPH
Sbjct: 1   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDL 146
           G++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +L
Sbjct: 61  GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLLSEL 119

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           G+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 120 GQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 164


>gi|297242271|gb|ADI24808.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242293|gb|ADI24819.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242219|gb|ADI24782.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   L+ ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|167861156|gb|ACA05281.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 112/147 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVA 204
           G  GIAV MATNIP HNL EV++GC+A
Sbjct: 121 GASGIAVRMATNIPPHNLTEVINGCLA 147


>gi|297242221|gb|ADI24783.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242255|gb|ADI24800.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   L+ ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|37999000|dbj|BAD00070.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999008|dbj|BAD00074.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999010|dbj|BAD00075.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999012|dbj|BAD00076.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999030|dbj|BAD00085.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|62084060|dbj|BAD91437.1| DNA topoisomerase subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 121/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A 
Sbjct: 61  VMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|3411104|gb|AAC31151.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411106|gb|AAC31152.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|208972171|gb|ACI32669.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 132

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 108/132 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDG 159
           K+TVDF  NYDG
Sbjct: 121 KETVDFVDNYDG 132


>gi|219815929|gb|ACL37051.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 112/138 (81%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ 
Sbjct: 1   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 61  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 120

Query: 139 AHFLLDDLGKDTVDFRPN 156
           AH L+ DL K+TVDF  N
Sbjct: 121 AHELMADLEKETVDFVDN 138


>gi|77166864|gb|ABA62408.1| DNA gyrase subunit A [Simkania negevensis]
          Length = 152

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 111/150 (74%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           DEM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+LF M Q+ +    K+ KCA+I G+  
Sbjct: 3   DEMKESYLRYSMSVIISRALPDVRDGLKPSQRRVLFAMRQLNLSPGAKHRKCAKICGDTS 62

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G YHPHG   IY  L RMAQDW +   L++GQGNFGS+DGDPPAA RYTE RL +A+  L
Sbjct: 63  GDYHPHGETVIYPTLVRMAQDWVMGYCLVQGQGNFGSIDGDPPAAMRYTEARLTRASMAL 122

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           ++DL K+TV++ PNY+ + QEP V  +++P
Sbjct: 123 MEDLDKETVEYVPNYNETKQEPTVFPSKFP 152


>gi|47419978|gb|AAT27341.1| DNA gyrase A [Campylobacter jejuni]
          Length = 269

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 114/295 (38%), Positives = 178/295 (60%), Gaps = 26/295 (8%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 269


>gi|9081893|gb|AAF82629.1| topoisomerase II subunit A [Staphylococcus simulans]
          Length = 143

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 111/141 (78%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA RY
Sbjct: 2   YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 62  TEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNI 121

Query: 191 PTHNLGEVVDGCVAVIDNPDI 211
           P HNL EV+DG +++  NPDI
Sbjct: 122 PPHNLTEVIDGVLSLSKNPDI 142


>gi|47419974|gb|AAT27339.1| DNA gyrase A [Campylobacter jejuni]
          Length = 264

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 175/288 (60%), Gaps = 26/288 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V
Sbjct: 2   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTV 61

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +        
Sbjct: 62  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-------- 113

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 114 ------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEITRLE 155

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 156 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 215

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G
Sbjct: 216 KRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRG 263


>gi|297242283|gb|ADI24814.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242287|gb|ADI24816.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 128/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   TKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242297|gb|ADI24821.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 129/181 (71%), Gaps = 4/181 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG   
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 180

Query: 250 I 250
           +
Sbjct: 181 V 181


>gi|3411102|gb|AAC31150.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|297242251|gb|ADI24798.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 128/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   TKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242223|gb|ADI24784.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242295|gb|ADI24820.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 128/177 (72%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|203283964|ref|YP_002221704.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
 gi|201083407|gb|ACH92998.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
          Length = 627

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 184/337 (54%), Gaps = 31/337 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNMAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTPLAFEVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNEILRAVK 176

Query: 204 AVIDNPDIDLDALMEIIR-GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +         + L E  +  PDFPTG ++       N YA G G +++R  + IE T  D
Sbjct: 177 S---------ELLGEAYKLYPDFPTGGIVDV-----NEYADGNGKVLVR--AKIEPTD-D 219

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + I++ E+P+     +++  I   +R K  + ++ + D +  +   + + L RG  A+ 
Sbjct: 220 NKAILIKELPFGETTESLIASIERAIR-KNYIKVSSINDFT-TENVEIELTLPRGVYANE 277

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           I+ +LY YT+ Q   SVN++ L+   P  +T+  I+K
Sbjct: 278 IIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIK 314


>gi|294992601|gb|ADF57427.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVN   GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNESSGISAGYATDIPPHNL 167


>gi|3411098|gb|AAC31148.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411100|gb|AAC31149.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG++++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYGAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|37998992|dbj|BAD00066.1| DNA gyrase subunit A [Streptococcus porcinus]
          Length = 140

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|297242229|gb|ADI24787.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 128/177 (72%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|37998990|dbj|BAD00065.1| DNA gyrase subunit A [Streptococcus iniae]
          Length = 140

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQENYDGSEREP 140


>gi|294992597|gb|ADF57425.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 118/164 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG++
Sbjct: 4   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDS 63

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 64  SIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 123

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 124 PFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|116089891|gb|ABJ55665.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 143

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 109/143 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYGTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHN 194
           PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHN 143


>gi|219815937|gb|ACL37055.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 111/135 (82%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ 
Sbjct: 2   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 61

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 62  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 121

Query: 139 AHFLLDDLGKDTVDF 153
           AH L+ DL K+TVDF
Sbjct: 122 AHELMADLEKETVDF 136


>gi|296253510|gb|ADH04216.1| GyrA [Gallibacterium anatis]
 gi|296253518|gb|ADH04220.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 109/143 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y+ L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYNTLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|297242303|gb|ADI24824.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K  R  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSGRTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|37998984|dbj|BAD00062.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 140

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|297242301|gb|ADI24823.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 128/177 (72%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242273|gb|ADI24809.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242291|gb|ADI24818.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 128/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   TKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|224458672|gb|ACN43199.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 235

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/255 (43%), Positives = 160/255 (62%), Gaps = 26/255 (10%)

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           +VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN 
Sbjct: 1   IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 60

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+
Sbjct: 61  LYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHI 120

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           L GL IA+ +LD V+ +IR S   E AR  L+++                          
Sbjct: 121 LEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------------------------- 154

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L+E Q +AIL++RL RLTGL R+ I  E  +L   I E  DIL++  ++L II++EL 
Sbjct: 155 FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQTLVKLIAELKDILANEYKVLEIIREELT 214

Query: 507 SVKDELDTPRRTRIV 521
            +K+  +  RRT IV
Sbjct: 215 EIKERFNDERRTEIV 229


>gi|86279131|gb|ABC88665.1| DNA gyrase A [Ornithobacterium rhinotracheale]
          Length = 136

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 108/136 (79%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+GM +MG+  N+ Y K AR+ GEVMGK+HPHG++++YD + RMAQDWS+R +L+
Sbjct: 1   VHRRVLYGMNEMGLLSNRGYKKSARVVGEVMGKFHPHGDSSVYDTMVRMAQDWSMRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGDPPAA RYTE R+QK +  +L D+ K+TVD + N+D +  EP VL  R 
Sbjct: 61  DGQGNFGSVDGDPPAAMRYTEARMQKISEEMLADIDKETVDQKLNFDDTLYEPTVLPTRI 120

Query: 172 PNVLVNGGGGIAVGMA 187
           PN+LVNG  GIAVGMA
Sbjct: 121 PNLLVNGAAGIAVGMA 136


>gi|297242241|gb|ADI24793.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242247|gb|ADI24796.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242279|gb|ADI24812.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 128/177 (72%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|3411108|gb|AAC31153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 115/165 (69%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|37999002|dbj|BAD00071.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999004|dbj|BAD00072.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999006|dbj|BAD00073.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/175 (52%), Positives = 120/175 (68%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A 
Sbjct: 61  VMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|37998982|dbj|BAD00061.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 140

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|296253512|gb|ADH04217.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 109/143 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG++A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDSAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|27262984|emb|CAD19825.1| gyrase A subunit [Yersinia ruckeri]
 gi|27262986|emb|CAD19826.2| gyrase A subunit [Yersinia ruckeri]
          Length = 134

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/134 (64%), Positives = 104/134 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGS 120

Query: 180 GGIAVGMATNIPTH 193
            GIAVGMATNIP H
Sbjct: 121 SGIAVGMATNIPPH 134


>gi|37998994|dbj|BAD00067.1| DNA gyrase subunit A [Streptococcus equi subsp. equi]
 gi|37998996|dbj|BAD00068.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 140

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDG+ +EP
Sbjct: 121 DINKNTVDFQDNYDGNEREP 140


>gi|219815935|gb|ACL37054.1| GyrA [Salmonella enterica]
          Length = 136

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 110/136 (80%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 141 FLLDDLGKDTVDFRPN 156
            L+ DL K+TVDF  N
Sbjct: 121 ELMADLEKETVDFVDN 136


>gi|37998986|dbj|BAD00063.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|37998988|dbj|BAD00064.1| DNA gyrase subunit A [Streptococcus canis]
          Length = 140

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|3411110|gb|AAC31154.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411112|gb|AAC31155.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411114|gb|AAC31156.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/165 (52%), Positives = 115/165 (69%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|297242239|gb|ADI24792.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242285|gb|ADI24815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y   AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242217|gb|ADI24781.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y   AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|296253506|gb|ADH04214.1| GyrA [Gallibacterium anatis]
 gi|296253516|gb|ADH04219.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 108/143 (75%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDYAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|1296985|emb|CAA64977.1| DNA gyrase subunit A [Sinorhizobium meliloti]
          Length = 148

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 109/148 (73%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRI+  M +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S
Sbjct: 1   RDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R  +++GQGNFG++DGD  AA RYTE ++ + A  LL+    D VDFRP Y+   QEP 
Sbjct: 61  QRYPVVDGQGNFGNIDGDNAAAYRYTEAKMTEVAALLLEGSTLDAVDFRPTYNEEDQEPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL   +PN+L NG  GIAVGMATNIP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|296253508|gb|ADH04215.1| GyrA [Gallibacterium anatis]
 gi|296253514|gb|ADH04218.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 108/143 (75%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|61651648|dbj|BAD91163.1| GyrA protein [Campylobacter fetus subsp. fetus]
          Length = 142

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/142 (64%), Positives = 106/142 (74%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  +
Sbjct: 1   VHRRILYAMNDLGVGSRSPYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQNFSMRVPAV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR 
Sbjct: 61  DGQGNFGSVDGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARV 120

Query: 172 PNVLVNGGGGIAVGMATNIPTH 193
           PN+L+NG  GIAVGMATNIP H
Sbjct: 121 PNLLLNGSSGIAVGMATNIPPH 142


>gi|37998968|dbj|BAD00054.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998976|dbj|BAD00058.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998978|dbj|BAD00059.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998980|dbj|BAD00060.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998998|dbj|BAD00069.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|62084058|dbj|BAD91436.1| DNA gyrase A subunit [Streptococcus agalactiae]
          Length = 140

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|7262517|dbj|BAA92798.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/139 (62%), Positives = 110/139 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 2   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP 
Sbjct: 62  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 121

Query: 193 HNLGEVVDGCVAVIDNPDI 211
           HNL EV++GC+A ID+ DI
Sbjct: 122 HNLTEVINGCLAYIDDEDI 140


>gi|9081889|gb|AAF82627.1| topoisomerase II subunit A [Staphylococcus hominis]
          Length = 143

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 109/141 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RY
Sbjct: 2   YKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 62  TEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNI 121

Query: 191 PTHNLGEVVDGCVAVIDNPDI 211
           P HNL EV+DG + +  NPDI
Sbjct: 122 PPHNLTEVIDGVLRLSQNPDI 142


>gi|219923480|emb|CAQ86602.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 108/139 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTHNLGEVVDG 201
           AVGMATNIP HNL EV++G
Sbjct: 121 AVGMATNIPPHNLTEVING 139


>gi|219815933|gb|ACL37053.1| GyrA [Salmonella enterica]
          Length = 135

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 2   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 61

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 62  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 121

Query: 141 FLLDDLGKDTVDF 153
            L+ DL K+TVDF
Sbjct: 122 ELMADLEKETVDF 134


>gi|37998970|dbj|BAD00055.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998972|dbj|BAD00056.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998974|dbj|BAD00057.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 140

 Score =  187 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 114/140 (81%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L 
Sbjct: 61  YHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|108937138|gb|ABG23381.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|108937142|gb|ABG23383.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 110/141 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|223936082|ref|ZP_03627996.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
 gi|223895304|gb|EEF61751.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
          Length = 701

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 194/373 (52%), Gaps = 30/373 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  S+L YA  VI  RAIP+L DGLKPV RRIL+ + +     + +++K A ISG    +
Sbjct: 64  MDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHEKD---DGRFIKVATISGHC-AQ 119

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG AAI DAL  +      +  LIEGQGNFG++  GDP AA RY ECRL + A   L
Sbjct: 120 YHPHGEAAIGDALVVITN----KRYLIEGQGNFGNIYTGDPAAAPRYIECRLTELARNEL 175

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                +  +F P+YDG  +EPV L ++ P +L+ G  GIAVGM+  I  HN  E+++  +
Sbjct: 176 --FNDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHNFPELLEAQI 233

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A++      +         PDFPTG ++  R      YA G+GSI +R     +  + D 
Sbjct: 234 AILKKQPFKV--------LPDFPTGGLMDAR-----EYADGKGSIKVRA----KIKAKDE 276

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             +V+ EIP      +++  I +  R+ +I  I  + D +  +   + I+   G SAD +
Sbjct: 277 STVVIKEIPPMTTTDSLIGSIEDASRKGKI-KIKSINDFTSEEA-EIEIKAPSGVSADQL 334

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           ++ LY +T  +   S  ++ +   +P   T+  +L+   A   + + R  +    K ++ 
Sbjct: 335 IDALYAFTDCEMSISSRIIVIRNNRPVEMTVSEVLRENTAQLVDTLKRELELKEKKLQEE 394

Query: 384 AHVLVGLAIAVAN 396
            H    + I + N
Sbjct: 395 LHFKTLVRIFIEN 407


>gi|7262519|dbj|BAA92799.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 87/139 (62%), Positives = 109/139 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 2   KSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP 
Sbjct: 62  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 121

Query: 193 HNLGEVVDGCVAVIDNPDI 211
           HNL EV++GC+A ID+ DI
Sbjct: 122 HNLTEVINGCLAYIDDEDI 140


>gi|108937140|gb|ABG23382.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|116582927|gb|ABK00081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|117950173|gb|ABK58470.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 148

 Score =  187 bits (475), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 111/145 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+L
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVD 200
           VNG  GIAVGMATNIP HNL EV++
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTEVIN 145


>gi|297242277|gb|ADI24811.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 130/183 (71%), Gaps = 4/183 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
           ++  R   +V GK+HP G++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   LESGRAGRDVFGKFHPDGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGS+
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179

Query: 249 VIR 251
           ++R
Sbjct: 180 IVR 182


>gi|46406038|gb|AAS93684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 142

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/142 (60%), Positives = 108/142 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+L
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 176 VNGGGGIAVGMATNIPTHNLGE 197
           VNG  GIAVGMATNIP HNL E
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTE 142


>gi|118132715|gb|ABK60210.1| topoisomerase IV [Shigella boydii]
          Length = 167

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 3/168 (1%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  
Sbjct: 1   RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVL 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ PN+
Sbjct: 61  MAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNF 119

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+
Sbjct: 120 DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 167


>gi|261599201|gb|ACX85663.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 113/157 (71%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           + +  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IY
Sbjct: 2   HTLFRRALPDIRDGLKPVQRRILYSMNKYGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIY 61

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F 
Sbjct: 62  DAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFA 121

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            N+D + +EP VL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 WNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATAIP 158


>gi|297242275|gb|ADI24810.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/177 (51%), Positives = 127/177 (71%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+ +GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDGLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|327179196|gb|AEA30141.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 141

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/141 (60%), Positives = 108/141 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 168 CARYPNVLVNGGGGIAVGMAT 188
             + PN+LVNG  GIAVG AT
Sbjct: 121 PTKIPNLLVNGSSGIAVGKAT 141


>gi|33338054|gb|AAQ13649.1|AF173982_1 DNA gyrase [Pasteurella multocida]
          Length = 139

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/139 (63%), Positives = 106/139 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG++A+Y  L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYGTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVG 185
           L  + P +LVNG  GIAVG
Sbjct: 121 LPTKVPALLVNGSSGIAVG 139


>gi|260100989|gb|ACX31659.1| DNA gyrase subunit A [Salmonella enterica]
          Length = 132

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDG 159
           K+TVDF  N+DG
Sbjct: 121 KETVDFVDNHDG 132


>gi|116582925|gb|ABK00080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 110/141 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++A+Y+ + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYNTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|108937144|gb|ABG23384.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|260100984|gb|ACX31657.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 135

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 108/133 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGS 160
           K+TVDF  N+DG+
Sbjct: 121 KETVDFVDNHDGT 133


>gi|297242233|gb|ADI24789.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 128/181 (70%), Gaps = 4/181 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K  R   +  GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSGRAVRDGFGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 250 I 250
           +
Sbjct: 181 V 181


>gi|224531518|ref|ZP_03672150.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
 gi|224510983|gb|EEF81389.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
          Length = 626

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 194/358 (54%), Gaps = 35/358 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ GG GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGGEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGETYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA-----FREEVVVRRTKYL 376
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A      + E+ ++R+K L
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELELQRSKIL 335


>gi|7262521|dbj|BAA92800.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/139 (61%), Positives = 109/139 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 2   KSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP 
Sbjct: 62  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPP 121

Query: 193 HNLGEVVDGCVAVIDNPDI 211
           HNL EV++GC+A ID+ DI
Sbjct: 122 HNLTEVINGCLAYIDDEDI 140


>gi|77166862|gb|ABA62407.1| DNA gyrase subunit A [Neochlamydia hartmannellae]
          Length = 147

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/145 (57%), Positives = 108/145 (74%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EM++SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+  
Sbjct: 2   EEMKDSYLRYSMSVIISRALPDVRDGLKPSQRRILYAMRQLNLSPGAKHRKCAKISGDTS 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G YHPHG   IY  L RMAQ+W +R  LI+GQGNFGS+DGDPPAA RY+E RL  A+  L
Sbjct: 62  GDYHPHGEMVIYPTLVRMAQNWVMRYSLIDGQGNFGSIDGDPPAAMRYSEARLTHASMQL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVL 167
           + DL K+TVD  PNYD + +EPVV 
Sbjct: 122 MKDLDKETVDHVPNYDETKKEPVVF 146


>gi|261599199|gb|ACX85662.1| ParC [Streptococcus oralis]
          Length = 161

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 111/152 (73%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 8   RALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 67

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D 
Sbjct: 68  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDD 127

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           + +EP VL A +PN+LVNG  GI+ G AT IP
Sbjct: 128 TEKEPTVLPAAFPNLLVNGSTGISAGYATEIP 159


>gi|47420008|gb|AAT27356.1| DNA gyrase A [Campylobacter lari]
          Length = 237

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/262 (41%), Positives = 160/262 (61%), Gaps = 26/262 (9%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT Y
Sbjct: 1   RDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLNLFLNHRKTVIIRRTIY 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFG------------- 107

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+    IL S +
Sbjct: 108 -------------LSELQSNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK EL  ++ + D PR T+I E   D++ ED I  E+MVVT++H GY+K VP   
Sbjct: 155 LLENLIKDELKEIRTKFDVPRITQIEEDYDDIDIEDLIPNENMVVTINHRGYIKXVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFV 577
           Y  Q+RGGKG+  V   D+DF+
Sbjct: 215 YEKQKRGGKGKVAVTTYDDDFI 236


>gi|192382652|gb|ACF04347.1| GyrA [Neisseria meningitidis]
          Length = 147

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 111/141 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           +A++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ 
Sbjct: 7   FAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDT 66

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV
Sbjct: 67  AVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETV 126

Query: 152 DFRPNYDGSFQEPVVLCARYP 172
           +F PNYDGS  EP+VL   +P
Sbjct: 127 NFGPNYDGSEHEPLVLPDPFP 147


>gi|261599191|gb|ACX85658.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 86/158 (54%), Positives = 116/158 (73%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           N+I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IY
Sbjct: 3   NIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIY 62

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DA+ARM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV + 
Sbjct: 63  DAMARMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWA 122

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            N+D + +EP VL A +PN+LVNG  GI+ G AT+  T
Sbjct: 123 WNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDNST 160


>gi|116582920|gb|ABK00079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y+ + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|24475515|dbj|BAC22722.1| DNA gyrase subunit A [Wolbachia endosymbiont of Callosobruchus
           chinensis]
          Length = 124

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/124 (66%), Positives = 100/124 (80%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G    K Y   ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+D
Sbjct: 1   RAGYHAGKPYKNAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSID 60

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPA+ RYTE RL K +HFLL+D+ +DT+DFRPNYDG+  EPVVL A +PN+LVNG  G
Sbjct: 61  GDPPASMRYTEARLHKVSHFLLNDIDEDTLDFRPNYDGNETEPVVLPAEFPNLLVNGASG 120

Query: 182 IAVG 185
           +AVG
Sbjct: 121 VAVG 124


>gi|325104895|ref|YP_004274549.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
 gi|324973743|gb|ADY52727.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
          Length = 898

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 137/443 (30%), Positives = 222/443 (50%), Gaps = 54/443 (12%)

Query: 10  EEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           EE E  I    + I+   +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    
Sbjct: 2   EENEDEILHNVIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD--- 58

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPA 126
           + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  A
Sbjct: 59  DGRFNKVANVIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGDPITGDSAA 113

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  ++     DT D++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 114 AARYIEGRLSKFALEVV--FNPDTTDWQLSYDGRNREPVTLPVKFPLLLAQGAEGIAVGL 171

Query: 187 ATNIPTHNLGEVVDGCVAVI--DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           AT +  HN  E++D  + V+  + P+I           PDFPTG +        + Y  G
Sbjct: 172 ATKVMPHNFIELIDASIEVLRGNRPNI----------LPDFPTGGL-----ADFSQYNEG 216

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +    IR  + I +   D++ +V++EIPY      +++ I  +    +        +++ 
Sbjct: 217 QRGGKIRVRAKISEL--DKKTLVISEIPYSTTTTGLIDSI--IAANDKGKIKIKKIEDNT 272

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            +   +VI L  G S D+ ++ LY +T+ ++  S N   +   KP   ++  IL     +
Sbjct: 273 AKNVEIVIHLAPGISPDLTIDALYAFTACETSISPNTCVIKKDKPHFMSVNDILIESTNY 332

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAV-------------ANLDEVVRIIR--FSPN 409
            + ++ R  +  L+  +++      L I +             +N +EVV+++   F P 
Sbjct: 333 TKALLKRELEIKLHDLQEKIFFSSLLKIFIQEGMYKNPEYENSSNFEEVVKVLHRLFDPF 392

Query: 410 PETARRELMQRSWNASDIKDLID 432
             +  RE+      A D K LID
Sbjct: 393 KSSLYREI-----EAEDFKKLID 410


>gi|226321135|ref|ZP_03796676.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
 gi|226233427|gb|EEH32167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
          Length = 626

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|312147811|gb|ADQ30470.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi JD1]
          Length = 626

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|260100980|gb|ACX31655.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Panama]
          Length = 128

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 105/127 (82%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120

Query: 147 GKDTVDF 153
            K+TVDF
Sbjct: 121 EKETVDF 127


>gi|261599189|gb|ACX85657.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 85/156 (54%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           N+D + +EP VL A +PN+LVNG  GI+ G AT+IP
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIP 159


>gi|15594381|ref|NP_212169.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 gi|195941775|ref|ZP_03087157.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 gi|216264420|ref|ZP_03436412.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218249341|ref|YP_002374569.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889128|ref|ZP_03623717.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225549222|ref|ZP_03770195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226322050|ref|ZP_03797575.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|3914263|sp|O51066|PARC_BORBU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2687910|gb|AAC66419.1| DNA topoisomerase IV (parC) [Borrelia burgdorferi B31]
 gi|215980893|gb|EEC21700.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218164529|gb|ACK74590.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885377|gb|EEF56478.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225370080|gb|EEG99520.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226232640|gb|EEH31394.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|312149750|gb|ADQ29821.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi N40]
          Length = 626

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|47419980|gb|AAT27342.1| DNA gyrase A [Campylobacter jejuni]
          Length = 259

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/284 (39%), Positives = 171/284 (60%), Gaps = 26/284 (9%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RR
Sbjct: 1   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRR 60

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +            
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------------ 108

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL 
Sbjct: 109 --------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILK 154

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP
Sbjct: 155 SETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVP 214

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G
Sbjct: 215 SKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRG 258


>gi|260100991|gb|ACX31660.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/131 (62%), Positives = 107/131 (81%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDG 159
           +TVDF  N+DG
Sbjct: 121 ETVDFVDNHDG 131


>gi|221217415|ref|ZP_03588886.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
 gi|221192693|gb|EEE18909.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
          Length = 626

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|224533950|ref|ZP_03674535.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225549759|ref|ZP_03770724.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
 gi|224512953|gb|EEF83319.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225369719|gb|EEG99167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
          Length = 626

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|284803671|emb|CBJ21241.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 142

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 112/142 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVL 175
           + N DGS +EP VL +R+P +L
Sbjct: 121 QDNSDGSKREPAVLPSRFPKML 142


>gi|11967832|emb|CAC19422.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 136

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 106/128 (82%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAHFLL 143
            K AH L+
Sbjct: 128 AKIAHELM 135


>gi|77166858|gb|ABA62405.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 152

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 83/150 (55%), Positives = 109/150 (72%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+  
Sbjct: 2   DEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTS 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYTE RL  A+  L
Sbjct: 62  GDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           ++DL K+TV+  PNYD + +EP V  +++P
Sbjct: 122 MEDLDKNTVEMVPNYDETKKEPTVFPSKFP 151


>gi|225552369|ref|ZP_03773309.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
 gi|225371367|gb|EEH00797.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
          Length = 626

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGESYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 323


>gi|224534930|ref|ZP_03675499.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
 gi|224513870|gb|EEF84195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
          Length = 626

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 30/346 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVR 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGETYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++V+
Sbjct: 278 IEKLYHYTNCQVSISVNLLLLSERYPVVYTIKDLIKFHAAHLQKVL 323


>gi|193735146|gb|ACF20082.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDYAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735136|gb|ACF20077.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|11245231|gb|AAG33513.1|AF302676_1 topoisomerase II [Enterobacter cloacae]
          Length = 135

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 106/134 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD     RYTE R+ K AH L+ DL
Sbjct: 61  PHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAGVMRYTEIRMSKIAHELMADL 120

Query: 147 GKDTVDFRPNYDGS 160
            K+T DF  NY+G+
Sbjct: 121 EKETDDFVDNYNGT 134


>gi|294992569|gb|ADF57411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 110/133 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|111114858|ref|YP_709476.1| DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 gi|216264054|ref|ZP_03436048.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
 gi|110890132|gb|ABH01300.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980098|gb|EEC20920.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
          Length = 626

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 185/342 (54%), Gaps = 34/342 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E+++   
Sbjct: 119 --YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGETYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           + +LY YT+ Q   SVN++ L+    ER+ ++  +K  + F 
Sbjct: 278 IEKLYHYTNCQISISVNLLLLS----ERYPVVYTIKDLIKFH 315


>gi|219923482|emb|CAQ86603.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 104/135 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD
Sbjct: 2   GNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 62  SAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 121

Query: 184 VGMATNIPTHNLGEV 198
           VGMATNIP HNL EV
Sbjct: 122 VGMATNIPPHNLTEV 136


>gi|108937146|gb|ABG23385.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|330837756|ref|YP_004412397.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749659|gb|AEC03015.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
          Length = 667

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 181/339 (53%), Gaps = 32/339 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL YA  VI  RAIPD+ DGLKPV RRI+  + +M    + K+ K A + G  M +Y
Sbjct: 9   RHNYLEYASYVIKERAIPDVVDGLKPVQRRIIHTLFEMD---DGKFHKVANVVGHSM-RY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+IY+AL  MA       L IE QGNFG ++ GD  AA RY ECR+   A  +L 
Sbjct: 65  HPHGDASIYEALVNMAN----FDLFIERQGNFGNALTGDRAAAGRYIECRIFPFAKRVL- 119

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
               +  ++  +YDG  +EPV   A+ P VL+ G  GIAVGM+T +  HN  EV+D   +
Sbjct: 120 -YNPELTEYVDSYDGRNREPVAFPAKIPVVLIQGAEGIAVGMSTKMLPHNAIEVLDAMKS 178

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           V+      L         PD PTG ++         Y  G GSI +R     +  + D +
Sbjct: 179 VLKGESFML--------FPDLPTGGIL-----DVQEYGDGTGSISVRA----KLDTSDPK 221

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD-ESDRQGYRVVIELKRGASADVI 323
           +IV+TE+PY V   AM+E I    R+ R+  +A + D  SD+    V   L RG  +  I
Sbjct: 222 RIVITELPYGVTSEAMIESIEAAARKGRL-KVAAINDYTSDKANIEVC--LARGTYSKDI 278

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            + LY +TS +   SVN + +    PE   +  I++  V
Sbjct: 279 EDALYAHTSCEQKISVNALVIKDNMPEIMPVSAIVRFHV 317


>gi|28865600|emb|CAD48114.1| topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 165

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 119/162 (73%), Gaps = 3/162 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEII 162


>gi|193735144|gb|ACF20081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|51598298|ref|YP_072486.1| DNA topoisomerase IV subunit A [Borrelia garinii PBi]
 gi|51572869|gb|AAU06894.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 626

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 184/342 (53%), Gaps = 34/342 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILSAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G I++R  + IE  + D 
Sbjct: 177 SELLGETYDI--------YPDFPTGGIVDV-----NEYADGNGKILVR--AKIE--TLDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           + +LY YT+ Q   SVN++ L+    ER+ ++  +K  + F 
Sbjct: 278 IEKLYHYTNCQISISVNLLLLS----ERYPVVYTIKDLIKFH 315


>gi|294992571|gb|ADF57412.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDY 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|325279767|ref|YP_004252309.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311576|gb|ADY32129.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 931

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 199/373 (53%), Gaps = 43/373 (11%)

Query: 2   TEHIISSDEE----------EEKG-ITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGL 49
           TE  I  DEE          EE G I S+   D M Q  +L YA  VIL RA+P + DGL
Sbjct: 48  TEQHIEDDEEIPQLIMEHSGEESGKIRSIQHLDGMYQKWFLDYASYVILERAVPYVNDGL 107

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRIL  M ++    + +Y K A I G  M KYHPHG+A+I DAL ++ Q    + L
Sbjct: 108 KPVQRRILHSMRELD---DGRYNKVANIIGNTM-KYHPHGDASIGDALVQLGQ----KDL 159

Query: 110 LIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           LI+ QGN+G++  GD  AA RY E RL K A  ++      T +++P+YDG  +EP+ L 
Sbjct: 160 LIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVV--FNPKTTNWKPSYDGRNREPITLP 217

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
            ++P +L  G  GIAVG+A+ I  HN  E++D C+A + + D  L         PDFPTG
Sbjct: 218 IKFPLLLAQGVEGIAVGLASKILPHNFNELIDACIAHLKHEDFVL--------YPDFPTG 269

Query: 229 AVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            +I       + Y  G   G++ IR  + IEK + +R  + +TEIP+    +++++ I  
Sbjct: 270 GMI-----DVSKYCDGMRGGNVKIR--AKIEKDNNNR-ALKITEIPFGRTTSSLIDSI-- 319

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           +   ++        D++  +   ++I+L  G S+D  ++ LY +T  +   S N   +  
Sbjct: 320 IKANEKGKIKIKKIDDNTARDVEILIQLAPGVSSDKTIDALYAFTDCELSISPNSCVIEE 379

Query: 347 YKPERFTLIGILK 359
            KP    +  IL+
Sbjct: 380 EKPRFMPISDILR 392


>gi|294992573|gb|ADF57413.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|219685308|ref|ZP_03540127.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
 gi|219673081|gb|EED30101.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
          Length = 626

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 192/360 (53%), Gaps = 34/360 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASIVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILSAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGETYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           + +LY YT+ Q   SVN++ L+    ER+ ++  +K  + F  + + +  K  L   R++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLS----ERYPVVYTIKDLIKFHADHLQKILKMELELQRNK 333


>gi|260100986|gb|ACX31658.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 131

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/131 (62%), Positives = 106/131 (80%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDG 159
           +TVDF  N+DG
Sbjct: 121 ETVDFVDNHDG 131


>gi|294992575|gb|ADF57414.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  182 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDF 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|190888732|gb|ACE95991.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 143

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 109/143 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVV 166
            ++ KDTVDF  NYD S QEPVV
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVV 143


>gi|219684816|ref|ZP_03539758.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
 gi|219671761|gb|EED28816.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
          Length = 626

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 192/360 (53%), Gaps = 34/360 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL   A  +L
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNLLTGDPASASRYIECRLTPLAFDVL 118

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E++    
Sbjct: 119 --YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILSAVK 176

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +     D+         PDFPTG ++       N YA G G +++R  + IE  + D 
Sbjct: 177 SELLGETYDI--------YPDFPTGGIVDV-----NEYADGNGKVLVR--AKIE--TIDE 219

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A  +
Sbjct: 220 KTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYASEV 277

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           + +LY YT+ Q   SVN++ L+    ER+ ++  +K  + F  + + +  K  L   R++
Sbjct: 278 IEKLYHYTNCQISISVNLLLLS----ERYPVVYTIKDLIKFHADHLQKILKMELELQRNK 333


>gi|315607502|ref|ZP_07882497.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
 gi|315250685|gb|EFU30679.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
          Length = 912

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 201/399 (50%), Gaps = 52/399 (13%)

Query: 2   TEHIISSDEEEEKGITSVSITDE-----------------MQNSYLTYAINVILGRAIPD 44
            EH+  + EE  + +T  + +D                   QN +L YA  VIL RA+P 
Sbjct: 8   NEHLTGTGEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPH 67

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q  
Sbjct: 68  IEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ-- 121

Query: 105 SLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQ 162
             + LLI+ QGN+G++  GD  AA RY E RL K   F LD      T D++ +YDG  +
Sbjct: 122 --KDLLIDCQGNWGNILTGDRAAAPRYIEARLSK---FALDVVFNPKTTDWQLSYDGRNK 176

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP+ L A++P +L  G  GIAVG+++ +  HNL E+ D  +  +   +  +         
Sbjct: 177 EPITLPAKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRI--------Y 228

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTG  I       + Y  G+    ++  + IEK   D + + V EIPY    A +++
Sbjct: 229 PDFPTGGAI-----DVSKYNDGQRGGALKVRAKIEKV--DNKTLAVREIPYSKTTATLID 281

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            I + V EK  +    + D +  +   ++I L  G S+D  ++ LY ++  +   S N  
Sbjct: 282 SITKAV-EKGKIKARKIEDNTAAE-VEILIHLAPGVSSDKTMDALYAFSDCEINISPNCC 339

Query: 343 ALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
            +   KP   T+  +L+  V       R+E+ +RR + L
Sbjct: 340 VIEDNKPGFLTVSDVLRHSVDRTMGLLRKELQIRRNELL 378


>gi|193735140|gb|ACF20079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYTMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|261599197|gb|ACX85661.1| ParC [Streptococcus parasanguinis]
          Length = 160

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 114/157 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           N+D + +EP VL A +PN+LVNG  GI+ G AT+  T
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDNST 160


>gi|288924619|ref|ZP_06418556.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
 gi|288338406|gb|EFC76755.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
          Length = 912

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 201/399 (50%), Gaps = 52/399 (13%)

Query: 2   TEHIISSDEEEEKGITSVSITDE-----------------MQNSYLTYAINVILGRAIPD 44
            EH+  + EE  + +T  + +D                   QN +L YA  VIL RA+P 
Sbjct: 8   NEHLTGTGEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPH 67

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q  
Sbjct: 68  IEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ-- 121

Query: 105 SLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQ 162
             + LLI+ QGN+G++  GD  AA RY E RL K   F LD      T D++ +YDG  +
Sbjct: 122 --KDLLIDCQGNWGNILTGDRAAAPRYIEARLSK---FALDVVFNPKTTDWQLSYDGRNK 176

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP+ L A++P +L  G  GIAVG+++ +  HNL E+ D  +  +   +  +         
Sbjct: 177 EPITLPAKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRI--------Y 228

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTG  I       + Y  G+    ++  + IEK   D + + V EIPY    A +++
Sbjct: 229 PDFPTGGAI-----DVSKYNDGQRGGALKVRAKIEKV--DNKTLAVREIPYSKTTATLID 281

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            I + V EK  +    + D +  +   ++I L  G S+D  ++ LY ++  +   S N  
Sbjct: 282 SITKAV-EKGKIKARKIEDNTAAE-VEILIHLAPGVSSDKTMDALYAFSDCEINISPNCC 339

Query: 343 ALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
            +   KP   T+  +L+  V       R+E+ +RR + L
Sbjct: 340 VIEDNKPGFLTVSDVLRHSVDRTMGLLRKELQIRRNELL 378


>gi|193735142|gb|ACF20080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++ +Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSPVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|261880504|ref|ZP_06006931.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
 gi|270332844|gb|EFA43630.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
          Length = 916

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 190/358 (53%), Gaps = 43/358 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+PD+ DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 65  KNWFLDYASYVILERAVPDIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 120

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 121 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 174

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ +  HN  E+ D  ++
Sbjct: 175 VFNPKTTEWQQSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLSSKVLPHNFNELCDAAIS 234

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +L         PDFPTG  I       + Y  G+    +R  + IEK   D +
Sbjct: 235 YLRGKEFEL--------YPDFPTGGAI-----DISKYNDGQRGGTVRVRAKIEKL--DSK 279

Query: 265 QIVVTEIPYQVNKAAMLEKIAEL-----VREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
            +V+ E+P+    A++ E I        ++ +R++D+   RD        + ++L  G S
Sbjct: 280 TLVIREVPFTKTAASLQESITRAIEKGKIKARRVIDMT-ARD------VEIQVQLSPGIS 332

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-----AFVAFREEVVVRR 372
           +D  ++ LY +T  +   S N   ++G KP   T+  +LK          R E+++R+
Sbjct: 333 SDKTIDALYAFTDCEINISPNCCVIDGNKPAFLTISDVLKHNADRTMGLLRTELLIRK 390


>gi|260100978|gb|ACX31654.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 128

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/126 (63%), Positives = 104/126 (82%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDF 153
           K+TVDF
Sbjct: 121 KETVDF 126


>gi|294992577|gb|ADF57415.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/133 (61%), Positives = 110/133 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           +F+ NYDGS +EP
Sbjct: 121 NFQDNYDGSEREP 133


>gi|215480315|gb|ACJ67502.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 233

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/250 (43%), Positives = 155/250 (62%), Gaps = 26/250 (10%)

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 2   PSQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 61

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           +LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL 
Sbjct: 62  ALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLR 121

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           +A+ +LD V+ +IR S   E AR  L+++                            L+E
Sbjct: 122 VALDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTE 155

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+ 
Sbjct: 156 KQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKER 215

Query: 512 LDTPRRTRIV 521
            +  RRT IV
Sbjct: 216 FNDERRTEIV 225


>gi|219815939|gb|ACL37056.1| GyrA [Salmonella enterica]
          Length = 130

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 106/129 (82%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+
Sbjct: 2   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 62  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 121

Query: 143 LDDLGKDTV 151
           + DL K+TV
Sbjct: 122 MADLEKETV 130


>gi|261599203|gb|ACX85664.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 112/153 (73%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 8   RALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 67

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D 
Sbjct: 68  MSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDD 127

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           + +EP VL A + N+LVNG  GI+ G AT+IP+
Sbjct: 128 TEKEPTVLPAAFSNLLVNGSTGISAGYATDIPS 160


>gi|320537065|ref|ZP_08037044.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
 gi|320146140|gb|EFW37777.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
          Length = 646

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 192/363 (52%), Gaps = 30/363 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
              ++L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G  M K
Sbjct: 8   FNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGHCM-K 63

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+A+I +AL  +A     + L I  QGNFG++  GD  +A RY ECR+ +    LL
Sbjct: 64  YHPHGDASIGNALVVLAN----KELFISKQGNFGNIYTGDEASAARYIECRITEFGKSLL 119

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                +   + P+YDG  +EP+V  A+ P VLV G  GIAVGM+T I  HN+ E+++  +
Sbjct: 120 --YNPNITQYVPSYDGRNKEPLVFRAKIPVVLVIGAEGIAVGMSTKILPHNIKEILEAEI 177

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             I+     L         PDFPTG +I       + Y  G G +++R     +  + D 
Sbjct: 178 QCIEGKPFAL--------YPDFPTGGLI-----DVSEYGDGLGKVLVRA----KLDTSDE 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           ++I++ E+P+     +M+  I    +  + V ++++ D +  +   + ++L RG  +  +
Sbjct: 221 KRILIKELPFGSTTESMITSIENASKSGK-VKVSEINDYT-AETVEIELKLPRGVYSQDV 278

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           ++ LY +T  +   S N++ +    P++ T+  ++K  V    +++    +Y     ++R
Sbjct: 279 VDSLYAFTECEQSISCNLLVIKNNLPQQMTVTDVIKNHVKQLLQILKDELEYERAMLQER 338

Query: 384 AHV 386
            H+
Sbjct: 339 LHM 341


>gi|44485|emb|CAA37623.1| gyrase A subunit [Mycoplasma pneumoniae]
          Length = 156

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 110/143 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++
Sbjct: 14  ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R
Sbjct: 74  PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVD 152
           YTE RL K A  LL D+ KDTVD
Sbjct: 134 YTEARLSKLAGELLRDIDKDTVD 156


>gi|261599193|gb|ACX85659.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 111/156 (71%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV    
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPLAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           N+D + +EP VL A +PN+LVNG  GI+ G AT  P
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATQFP 159


>gi|121511880|gb|ABM55391.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 168/306 (54%), Gaps = 58/306 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYV 648
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ DES      +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESK----SL 116

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVR 707
           VF T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+R
Sbjct: 117 VFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIR 176

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F +   R   GR++ GVRGI        I   IV++AD                      
Sbjct: 177 FELEKTRD-QGRSTRGVRGIKFK-----IDTDIVVYADV--------------------- 209

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +  +EQ ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 210 -------------------------IDSEEQEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVS 833
            A  +S
Sbjct: 245 IAMKLS 250



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 30/254 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T 
Sbjct: 6   NEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTN 65

Query: 702 LGQCVRFPISAI----RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +GQ     +  I    R   G+  V +  I+L   +++  MAI+   D D  + + +   
Sbjct: 66  MGQLYWLKVYKIPEGSRTAKGKAVVNL--INLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQEL------KLKEQFILTVSEKG 807
               +R         TSL   S++  N    I  +   E+       ++ Q+I+  +  G
Sbjct: 122 NGIIKR---------TSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLG 172

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
              R      R   RS +G+R     KI+    + A    ++  +I+ VS+KG   R  +
Sbjct: 173 QCIRFELEKTRDQGRSTRGVRGIKF-KIDTDIVVYADVIDSEEQEILTVSEKGIGKRTTI 231

Query: 868 NEIRIASRATKGVV 881
            E R+ +RA  GV+
Sbjct: 232 EEYRLTNRAGSGVI 245


>gi|297242249|gb|ADI24797.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 126/183 (68%), Gaps = 4/183 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y   AR  G+V+GK  PHG++  Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YRISARTVGDVLGKLDPHGDSGCYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A +I  ++ I+  Y  GRG 
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179

Query: 248 IVI 250
             +
Sbjct: 180 HTV 182


>gi|295394216|gb|ADG03719.1| DNA topoisomerase IV subunit A [Streptococcus cristatus]
 gi|295394218|gb|ADG03720.1| DNA topoisomerase IV subunit A [Streptococcus gordonii]
 gi|295394238|gb|ADG03730.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK1]
          Length = 151

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 109/148 (73%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 4   RALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 63

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N+D 
Sbjct: 64  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLQDIEKDTVPFAWNFDD 123

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 124 TEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|320540698|ref|ZP_08040319.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029239|gb|EFW11297.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 131

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 102/124 (82%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 68  RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127

Query: 136 QKAA 139
            K A
Sbjct: 128 SKIA 131


>gi|281421903|ref|ZP_06252902.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
 gi|281404145|gb|EFB34825.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
          Length = 953

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 187/354 (52%), Gaps = 35/354 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 65  QNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 120

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 121 HPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSK---FALD 173

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T D++ +YDG  +EP+ L A++P +L  G  GIAVG+++ +  HN  E+ D  V
Sbjct: 174 VVFNPKTTDWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKVLPHNFNEICDAAV 233

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +      L         PDFPTG  I       + Y  G+    ++  + I+K   D 
Sbjct: 234 HYLKGEPFQL--------YPDFPTGGAI-----DVSKYNDGQRGGALKVRAKIDKL--DN 278

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V++EIP+     ++++ I + V + +I   A   D+       +++ L  G S+D  
Sbjct: 279 KTLVISEIPFSKTTGSLIDSITKAVEKGKIK--ARKVDDVTSANVEILVHLAPGTSSDKT 336

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRR 372
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+++R+
Sbjct: 337 MDALYAFSDCEINISPNCCVIEDNKPVFLTISDVLRHSVDRTMGLLRKELMIRK 390


>gi|295092032|emb|CBK78139.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 504

 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 149/515 (28%), Positives = 261/515 (50%), Gaps = 35/515 (6%)

Query: 258 KTSGDREQIVVTEIPYQ-----VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           K   D++++V+TEIPY      +NK  M   IAELV  K++ D+ D+ ++S+++G R+V+
Sbjct: 7   KRKADKDKLVITEIPYTMIGAGINKCLM--DIAELVESKKLTDVVDISNQSNKEGIRIVL 64

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ E   R+
Sbjct: 65  ELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVKGRPETLNLRGILKNYLDFQYENNTRK 124

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            + LL K  ++  +  GL  A   +D ++ ++R S N + A+  L+    +A   K   +
Sbjct: 125 YRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDAKACLINGDTSAIRFK-TPE 183

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L  D+       G +  +E Q  AILE+RL +L GL    +  E      +IKE   ILS
Sbjct: 184 LEKDA-------GKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKILS 236

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +  +  +IK++L ++K E   PRRT I +G   + DE  +   ++V  +   GY + V 
Sbjct: 237 DKGTMDQVIKEDLAAIKREFAYPRRTLIEDGKEVVYDESAVEVREVVFVMDRFGYSRIVD 296

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S Y   R          + +E+  T +        +  F+  G +++ KV  +P+G  +
Sbjct: 297 RSTYDRNRE--------TIENEN--THVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLR 346

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G  + N+   + G +  T+  F  + SS      +FAT+   ++R    +F + N   
Sbjct: 347 DKGTPIDNLCKFD-GTKEQTV--FVTNASSLQGKLFLFATRDAMLKRVPGEEF-ETNNRM 402

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A KL   D ++SV+   + ++++L T  G  +RF +  I V   +N+ GVRGI L +G
Sbjct: 403 VAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISV-QKKNARGVRGIKLGRG 461

Query: 733 DQVISMAIVLHADAD----YDERICYMKHMSAQRR 763
            + +    +L A+ +    Y E+  ++  +   RR
Sbjct: 462 -EALEQVYLLGANTESVITYKEKQVHLNRLKQGRR 495



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 20/114 (17%)

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G  E+   + N SS++G              +  L  +     KR    +F  +NR    
Sbjct: 360 GTKEQTVFVTNASSLQG--------------KLFLFATRDAMLKRVPGEEFETNNR---- 401

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                 +K+ E  +LV+V P ++  +++L +D G  +R  ++EI +  +  +GV
Sbjct: 402 --MVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGV 453


>gi|295394212|gb|ADG03717.1| DNA topoisomerase IV subunit A [Streptococcus anginosus]
          Length = 151

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 109/148 (73%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 4   RALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 63

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N+D 
Sbjct: 64  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKDTVPFAWNFDD 123

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 124 TEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|213865327|ref|ZP_03387446.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 357

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 176/312 (56%), Gaps = 26/312 (8%)

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +T
Sbjct: 6   DINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANT 65

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N 
Sbjct: 66  HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN- 124

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             V  AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ 
Sbjct: 125 --VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKV 182

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISM-------AIVLHADADYDERICYMKHM 758
           VRF   A+R   GR + GVRGI LA  D+V+S+       AI+      Y +R    ++ 
Sbjct: 183 VRFKEDAVRAM-GRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYP 241

Query: 759 SAQRRLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +  R      T+ + S+K    + SV G +  + C +       I+ +++ G   RT   
Sbjct: 242 TKSRA-----TQGVISIKVTERNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVS 289

Query: 816 DFRISNRSGKGI 827
           +  +  R+ +G+
Sbjct: 290 EISVVGRNTQGV 301


>gi|121511874|gb|ABM55388.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
 gi|121511876|gb|ABM55389.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/306 (36%), Positives = 167/306 (54%), Gaps = 58/306 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYV 648
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ DES      +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESK----SL 116

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVR 707
           VF T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+R
Sbjct: 117 VFFTRNGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIR 176

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F +   R   GR++ GVRGI        I   IV+ AD   +E                 
Sbjct: 177 FELEKTRD-QGRSTRGVRGIKFK-----IDTDIVVDADVIDNE----------------- 213

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                        EQ ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 214 -----------------------------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVS 833
            A  +S
Sbjct: 245 IAMKLS 250



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 30/254 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T 
Sbjct: 6   NEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTN 65

Query: 702 LGQCVRFPISAI----RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +GQ     +  I    R   G+  V +  I+L   +++  MAI+   D D  + + +   
Sbjct: 66  MGQLYWLKVYKIPEGSRTAKGKAVVNL--INLRADEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQEL------KLKEQFILTVSEKG 807
               +R         TSL   S++  N    I  +   E+       ++ Q+I+  +  G
Sbjct: 122 NGVIKR---------TSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLG 172

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
              R      R   RS +G+R     KI+    + A    N+  +I+ VS+KG   R  +
Sbjct: 173 QCIRFELEKTRDQGRSTRGVRGIKF-KIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTI 231

Query: 868 NEIRIASRATKGVV 881
            E R+ +RA  GV+
Sbjct: 232 EEYRLTNRAGSGVI 245


>gi|193735138|gb|ACF20078.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  180 bits (457), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 80/141 (56%), Positives = 107/141 (75%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+  +Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDCPVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|256422125|ref|YP_003122778.1| DNA topoisomerase IV subunit A [Chitinophaga pinensis DSM 2588]
 gi|256037033|gb|ACU60577.1| DNA topoisomerase (ATP-hydrolyzing) [Chitinophaga pinensis DSM
           2588]
          Length = 846

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 197/373 (52%), Gaps = 38/373 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + + D  +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + ++ K A + 
Sbjct: 18  LHLGDMYENWFLDYASYVILERAVPSVEDGLKPVQRRILHAMKEMD---DGRFNKVANVI 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M ++HPHG+A+I DA+  + Q    + LLI+ QGN+G V  GD  AA RY E RL K
Sbjct: 75  GSTM-QFHPHGDASIGDAIVNLGQ----KDLLIDTQGNWGDVRTGDDAAAARYIEARLSK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  L       T  ++ +YDG   EP+ L  ++P +L  G  GIAVG++T I  HN  E
Sbjct: 130 FA--LEVGFNSKTTQWQLSYDGRKNEPLALPMKFPLLLAQGAEGIAVGLSTKILPHNFIE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++  +  +     ++         PDFPTG +I     + N Y  GR    +R  +HIE
Sbjct: 188 LLEASIKYLKGKKFEI--------FPDFPTGGMI----DVAN-YNDGRRGGKVRVRAHIE 234

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAEL-----VREKRIVDIADLRDESDRQGYRVVI 312
           +   D++ +++ ++PY V   A++E I +      ++ K++VD       +  +   + +
Sbjct: 235 EK--DKKTLLIKDVPYGVTTTALMESIVKANDNGKIKIKKVVD-------NTAKDVEIEV 285

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L  G S D+ ++ LY +T  +   S N   +   KP   T+  +L++   F + ++ R 
Sbjct: 286 QLAPGISPDITIDALYAFTDCEISISPNACVIIDDKPRFLTVSELLRSSADFTQALLKRE 345

Query: 373 TKYLLNKARDRAH 385
            +  L++ +D+ H
Sbjct: 346 LEIRLSELQDKWH 358


>gi|300726639|ref|ZP_07060075.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299776077|gb|EFI72651.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 912

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 187/353 (52%), Gaps = 33/353 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A + G  M ++
Sbjct: 55  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANVVGHTM-QF 110

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 111 HPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 164

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HN  E+ +  +A
Sbjct: 165 VFNPKTTEWQFSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKVLPHNFIEICNAAIA 224

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   D  L         PDFPTG  I       + Y  G+   V++  + IEK   D +
Sbjct: 225 YLKGEDFHL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRAKIEKV--DNK 269

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + V EIP+  N + ++E I + V EK  +    + D +  Q   ++I L  G S+D  +
Sbjct: 270 TLAVREIPFSKNTSTLIESITKAV-EKGKIKARKIEDNTSAQA-EILIHLAPGVSSDKTM 327

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREEVVVRR 372
           + LY +T  +   S N   +   KP   T+  +L     +     R+E+++R+
Sbjct: 328 DALYAFTDCEINISPNCCVIEDQKPCFLTVSDVLRHSADRTMGLLRQELLIRK 380


>gi|313621653|gb|EFR92449.1| DNA gyrase subunit A [Listeria innocua FSL S4-378]
          Length = 327

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 180/350 (51%), Gaps = 59/350 (16%)

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P
Sbjct: 1   TKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVP 60

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +
Sbjct: 61  EYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAK 117

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI
Sbjct: 118 IRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGI 176

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D+VI M +                                  L++D  V      
Sbjct: 177 RLREDDEVIGMEV----------------------------------LEDDEKV------ 196

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                        L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V
Sbjct: 197 -------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTV 241

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 242 TGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 291


>gi|189502210|ref|YP_001957927.1| DNA topoisomerase IV subunit A [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497651|gb|ACE06198.1| hypothetical protein Aasi_0825 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/402 (33%), Positives = 204/402 (50%), Gaps = 39/402 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I D  Q+ +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G+
Sbjct: 18  IGDMYQSWFLDYASYVILERAVPAIEDGLKPVQRRILHAMKEMD---DGRYNKVANIIGQ 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I +A+  + Q    + LLI+ QGN+G +  GD  AA RY E R    A
Sbjct: 75  TM-QYHPHGDASIAEAIINLGQ----KELLIDMQGNWGDIRTGDSAAAARYIEARPSSLA 129

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H +L         ++ +YDG  +EPV    ++P +L  G  GIAVG+AT I  HN  E++
Sbjct: 130 HAIL--YSPQITSWQLSYDGRKKEPVTFPIKFPLLLAQGAEGIAVGLATKILPHNFCELI 187

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +G +AV+     +L         PDFPTG ++       +AY  G+    IR  + IE  
Sbjct: 188 EGAIAVLQGKTTNL--------LPDFPTGGLVDC-----SAYNEGKRGGRIRLRARIEIL 234

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D++ + + EIPY     +++E I     E+  + I  + D +  +   +++ L  G S
Sbjct: 235 --DKKTLAIREIPYGTTTNSLIESIIR-AYERGKIKIKQVIDNT-AEDVEILVHLAPGQS 290

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            DV+L+ LY +T  +   S N   +   KP   T IG+ +       E    RTK +L +
Sbjct: 291 PDVVLDALYVFTDCEIGISPNTCVIKDEKP---TFIGVNELL-----EYNTYRTKDILQQ 342

Query: 380 ARDRAHVLVGLAIAVANLDEVV---RIIRFSPNPETARRELM 418
                H  +   I  A+L+++    RI R     ET  + L+
Sbjct: 343 ELTLQHKNLQEKILFASLEKLFIEKRIYRDIEESETWEQVLL 384


>gi|261599195|gb|ACX85660.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 111/151 (73%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 9   RALPDIRDGLKPVQRRILYSMNKDGNAHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 68

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N+D 
Sbjct: 69  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWNFDD 128

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           + +EP VL A +PN+LVNG  GI+ G AT+I
Sbjct: 129 TEKEPTVLPAAFPNLLVNGATGISAGYATDI 159


>gi|295394222|gb|ADG03722.1| DNA topoisomerase IV subunit A [Streptococcus intermedius]
          Length = 151

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/148 (56%), Positives = 109/148 (73%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 4   RALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 63

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N+D 
Sbjct: 64  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLAEIAGYLLQDIEKDTVPFAWNFDD 123

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 124 TEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|312889464|ref|ZP_07749016.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
 gi|311298016|gb|EFQ75133.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
          Length = 914

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/426 (31%), Positives = 215/426 (50%), Gaps = 54/426 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    + ++ K A + G  M KY
Sbjct: 24  ENWFLDYASYVILDRAVPHIYDGLKPVQRRILHSLKEMD---DGRFNKAANVIGNTM-KY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DA+ ++ Q    + L+I+ QGN+G  V GD  AA RY E RL K   F +D
Sbjct: 80  HPHGDASIGDAMVQIGQ----KNLMIDCQGNWGDPVTGDSAAAPRYIEARLSK---FAID 132

Query: 145 -DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                DT  ++ +YDG  +EP+ L  ++P +L  G  GIAVG+AT I  HN  E++D  +
Sbjct: 133 VAFNPDTTIWQSSYDGRNREPITLPVKFPLLLAQGAEGIAVGLATKILPHNFVELLDASI 192

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA--YATGRGSIVIRGVSHIEKTSG 261
           AV++    +L         PDFPTG       G+ +A  Y  G+    +R  + I +   
Sbjct: 193 AVLNGIRPNL--------LPDFPTG-------GLADASNYNEGQRGGKVRVRARIAER-- 235

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           D++ +V+TE+P+      ++E +     +K  + I  + D + +    ++I L  G S D
Sbjct: 236 DKKTLVITEVPFSTTTGGLMESVV-AANDKGKIKIKSIVDHTSKN-VEILINLAPGISPD 293

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           V ++ LY +T  +   S N   ++  KP   ++  +L       +E++ +  +  LN+ +
Sbjct: 294 VTIDALYAFTDCEVSISPNTCVIHDDKPRFMSVNDMLTESTYHTKELLKQELEIRLNELK 353

Query: 382 DRAHVLVGLAIAV-------------ANLDEVVRIIR--FSPNPETARRELMQRSWNASD 426
           ++      L I +             AN + VV ++   F P      R ++     A D
Sbjct: 354 EKIFFSSLLKIFIQQGMYKNPAYETSANFEAVVEVLNGLFEPFFSQFYRTIL-----AED 408

Query: 427 IKDLID 432
            K LID
Sbjct: 409 YKKLID 414


>gi|33469556|gb|AAQ19803.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 153

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/153 (54%), Positives = 110/153 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A
Sbjct: 1   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 61  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            F  N+D + +EP VL A +PN+LVNG  GI+ 
Sbjct: 121 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISA 153


>gi|121511878|gb|ABM55390.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/306 (35%), Positives = 167/306 (54%), Gaps = 58/306 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYV 648
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ DES      +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESK----SL 116

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVR 707
           VF T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+R
Sbjct: 117 VFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIR 176

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F +   R   GR++ GVRGI        I   IV+ AD                      
Sbjct: 177 FELEKTRD-QGRSTRGVRGIKFK-----IDTDIVVDADV--------------------- 209

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +  +EQ ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 210 -------------------------IDSEEQEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVS 833
            A  +S
Sbjct: 245 IAMKLS 250



 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 30/254 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T 
Sbjct: 6   NEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTN 65

Query: 702 LGQCVRFPISAI----RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +GQ     +  I    R   G+  V +  I+L   +++  MAI+   D D  + + +   
Sbjct: 66  MGQLYWLKVYKIPEGSRTAKGKAVVNL--INLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQEL------KLKEQFILTVSEKG 807
               +R         TSL   S++  N    I  +   E+       ++ Q+I+  +  G
Sbjct: 122 NGIIKR---------TSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLG 172

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
              R      R   RS +G+R     KI+    + A    ++  +I+ VS+KG   R  +
Sbjct: 173 QCIRFELEKTRDQGRSTRGVRGIKF-KIDTDIVVDADVIDSEEQEILTVSEKGIGKRTTI 231

Query: 868 NEIRIASRATKGVV 881
            E R+ +RA  GV+
Sbjct: 232 EEYRLTNRAGSGVI 245


>gi|198276965|ref|ZP_03209496.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
 gi|198270490|gb|EDY94760.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
          Length = 881

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 199/387 (51%), Gaps = 50/387 (12%)

Query: 9   DEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           ++EE      VS TDE          QN +L YA  VIL RA+P + DGLKPV RRIL  
Sbjct: 18  EKEEHSDYKPVSTTDEAVKHQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHS 77

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G+
Sbjct: 78  MKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGN 129

Query: 120 V-DGDPPAAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           +  GD  AA RY E RL K   F LD      T +++ +YDG  +EPV L  ++P +L  
Sbjct: 130 ILTGDSAAAPRYIEARLSK---FALDVVFNPKTTEWQASYDGRNREPVTLPVKFPLLLAQ 186

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTG 236
           G  GIAVG+++ I  HN  E+ D  +A +   D  L         PDF TG  I + R  
Sbjct: 187 GVEGIAVGLSSKILPHNFNELCDAAIAYLHGEDFQL--------YPDFQTGGSIDVSR-- 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
               Y  G    V+R  + I K   D + + ++EIPY    +++++ I + + + +I   
Sbjct: 237 ----YNDGERGGVVRVRAKISKI--DNKTLCISEIPYGKTTSSLIDSILKAIEKGKI--- 287

Query: 297 ADLRDESDRQGYRV--VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
             +R   D    +V  ++ L  G S+D  L+ LY +T  +   S N   ++  KP   ++
Sbjct: 288 -KVRKVDDNTAGKVEILVHLTPGVSSDKTLDALYAFTDCEVNISPNCCVIDNKKPHFLSV 346

Query: 355 IGILKAFV-----AFREEVVVRRTKYL 376
             +LK  V       R+E+ ++R + L
Sbjct: 347 SKVLKKSVDNTLALLRKELEIQRDETL 373


>gi|153025|gb|AAA26636.1| gyrase A [Staphylococcus aureus]
          Length = 146

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 108/138 (78%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QKAAHFLLDDLGKDTVDF 153
            K    LL D+ KDT+DF
Sbjct: 129 TKITLELLRDINKDTIDF 146


>gi|60678998|gb|AAX33780.1| topoisomerase IV subunit A [Mycoplasma synoviae]
 gi|60679000|gb|AAX33781.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 170

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 115/165 (69%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G++ +K + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN
Sbjct: 6   LYSMWMLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGN 65

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            GS+D DP AA RYTE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LV
Sbjct: 66  KGSIDDDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLV 125

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           NG  GIA G AT+IP HNL E++D C+  + N       + +II+
Sbjct: 126 NGTKGIASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIK 170


>gi|295394220|gb|ADG03721.1| DNA topoisomerase IV subunit A [Streptococcus infantis]
 gi|295394224|gb|ADG03723.1| DNA topoisomerase IV subunit A [Streptococcus mitis]
 gi|295394228|gb|ADG03725.1| DNA topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
          Length = 151

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|219920965|emb|CAQ76660.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 137

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/136 (61%), Positives = 104/136 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNL 195
            GIAVGMATNIP HNL
Sbjct: 121 SGIAVGMATNIPPHNL 136


>gi|224026477|ref|ZP_03644843.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
 gi|224019713|gb|EEF77711.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
          Length = 877

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 150/500 (30%), Positives = 245/500 (49%), Gaps = 54/500 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 41  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 96

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 97  HPHGDASIGDALVQLGQ----KELLIDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 149

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 150 VVFNPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAI 209

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF TG  I + R      Y  G    V+R  + I K   D
Sbjct: 210 AYLHGEEFKL--------YPDFQTGGSIDVSR------YNDGERGGVVRVRAKISKL--D 253

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + ++EIPY    +++++ I + + EK  + I  + D + R+   ++I L  G S+D 
Sbjct: 254 NKTLCISEIPYGKTTSSLIDSILKAI-EKGKIKIRKVDDNTARK-VEILIHLAPGVSSDK 311

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            L+ LY +T  +   S N   ++  KP   T+  +L+  V    +++ +  +   N+  +
Sbjct: 312 TLDALYAFTDCEVNISPNCCVIDNKKPHFLTVSDVLRKSVNNTRDLLRKELEIQKNETLE 371

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H         A+L+++    R   + +  + E M       DI    + ID+      
Sbjct: 372 TLH--------FASLEKIFIEERIYKDKQFEQAENM-------DIA--CEHIDERLTPFY 414

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 +++     ++E+++AR+    +D     +  L  EI+E   I +  + L     
Sbjct: 415 PQFVREVTKEDILRLMEIKMARILKFNKDKADELIARLKAEIEE---IDNHLAHLTEYTI 471

Query: 503 QELLSVKDEL--DTPRRTRI 520
           +    +KD+   D PRRT I
Sbjct: 472 EWYRHLKDKYGKDFPRRTEI 491


>gi|303236883|ref|ZP_07323462.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
 gi|302483051|gb|EFL46067.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
          Length = 990

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 242/503 (48%), Gaps = 60/503 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I+G  M ++
Sbjct: 110 KNWFLDYASYVILERAVPHIDDGLKPVQRRILHSMKRMD---DGRYNKVANIAGHTM-QF 165

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 166 HPHGDASICDALVQMGQ----KDLLIDTQGNWGNIFTGDRAAAPRYIESRLSKFA--LET 219

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EPV L A++P +L  G  GIAVG+++ I  HN+ E+ D  + 
Sbjct: 220 VFNPKTTEWQLSYDGRNKEPVTLPAKFPLLLAQGAEGIAVGLSSKILPHNMVEICDAAIN 279

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +      L         PDFPTG  I         Y  G+    ++  + +EK   D +
Sbjct: 280 YLKEKPFAL--------YPDFPTGGSI-----DVEKYNDGQRGGTLKVRAKVEKI--DNK 324

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V EK  + I  + D +  +   + + L  G S+D  +
Sbjct: 325 TLVIREVPFTKTASSLAESITKAV-EKGKLKIRKVEDMTASE-VEIQLHLTPGTSSDKTM 382

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   ++  KP+  T+  +L+          V  T+ LL +     
Sbjct: 383 DALYAFTDCEVSISPNCCVISDNKPQFLTISDVLRH--------SVNHTQGLLRRE---- 430

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPE---TARRELMQRSW-NASDIKDLIDLIDDSSYT 440
                L I  A L+E +    F  + E      R   +R +  A  + D I  +D     
Sbjct: 431 -----LEIRKAELEEQL----FFSSLERIFIEERIYKERGFETAKTMDDAIKFVDGKLEP 481

Query: 441 IGSDGTMYLSEVQTRAIL---ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +   ++ EV+   IL   E+++ R+    +D     L ++  EI E    LS   R+
Sbjct: 482 FKKN---FIREVKREDILRLMEIKMQRILKFNKDKADELLKNIQAEIAEINKDLSEMVRV 538

Query: 498 LGIIKQELLSVKDELDTPRRTRI 520
             I   + L  K   D PR+T I
Sbjct: 539 T-IEWFKHLKTKYGKDYPRKTEI 560


>gi|121511882|gb|ABM55392.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 166/306 (54%), Gaps = 58/306 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYV 648
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ DES      +
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESK----SL 116

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVR 707
           VF T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+R
Sbjct: 117 VFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIR 176

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F +   R   GR++ GVRGI        I    V+ AD                      
Sbjct: 177 FELEKTRD-QGRSTRGVRGIKFK-----IDTDFVVDADV--------------------- 209

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +  +EQ ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 210 -------------------------IDSEEQEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVS 833
            A  +S
Sbjct: 245 IAMKLS 250



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 30/254 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T 
Sbjct: 6   NEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTN 65

Query: 702 LGQCVRFPISAI----RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +GQ     +  I    R   G+  V +  I+L   +++  MAI+   D D  + + +   
Sbjct: 66  MGQLYWLKVYKIPEGSRTAKGKAVVNL--INLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQEL------KLKEQFILTVSEKG 807
               +R         TSL   S++  N    I  +   E+       ++ Q+I+  +  G
Sbjct: 122 NGIIKR---------TSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLG 172

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
              R      R   RS +G+R     KI+    + A    ++  +I+ VS+KG   R  +
Sbjct: 173 QCIRFELEKTRDQGRSTRGVRGIKF-KIDTDFVVDADVIDSEEQEILTVSEKGIGKRTTI 231

Query: 868 NEIRIASRATKGVV 881
            E R+ +RA  GV+
Sbjct: 232 EEYRLTNRAGSGVI 245


>gi|295394214|gb|ADG03718.1| DNA topoisomerase IV subunit A [Streptococcus australis]
 gi|295394230|gb|ADG03726.1| DNA topoisomerase IV subunit A [Streptococcus parasanguinis]
          Length = 151

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/148 (55%), Positives = 108/148 (72%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 4   RALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 63

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D 
Sbjct: 64  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDD 123

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 124 TEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|317505289|ref|ZP_07963218.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
 gi|315663592|gb|EFV03330.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
          Length = 903

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 188/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 44  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 99

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 100 HPHGDASIGDALVQMGQ----KDLLVDCQGNWGNILTGDRAAAPRYIEARLSK---FALD 152

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ D  +
Sbjct: 153 VVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDSAI 212

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   D  L         PDFPTG  I       + Y  G+   V++  + IEK   D 
Sbjct: 213 KYLKGEDFQL--------YPDFPTGGAI-----DVSKYNDGQRGGVLKVRAKIEKL--DN 257

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S+D  
Sbjct: 258 KTLVIREIPFSKTTTTLIDSILKAIDKGKIK--AKRVDDNTAAEVEIQVHLAPGVSSDKT 315

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+ +RR + L
Sbjct: 316 MDALYAFSDCEINLSPNCCVIEDNKPVFLTVSDVLRHGVDRTMGLLRKELQIRRGELL 373


>gi|149278653|ref|ZP_01884789.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
 gi|149230648|gb|EDM36031.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
          Length = 1019

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 137/439 (31%), Positives = 212/439 (48%), Gaps = 62/439 (14%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T + I    +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    + ++ K A 
Sbjct: 16  TVIPINGLYENWFLDYASYVILDRAVPHIHDGLKPVQRRILHSLKEMD---DGRFNKAAN 72

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRL 135
           + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  AA RY E RL
Sbjct: 73  VIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDSAAAPRYIEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A+ +      DT  ++ +YDG   EP+ L  ++P +L  G  GIAVG+AT +  HN 
Sbjct: 128 SKFANEVA--FNSDTTVWQLSYDGRNNEPITLPIKFPLLLAQGAEGIAVGLATKVMPHNF 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIKNAYATGRGSIV 249
            E+              LDA ME++RG      PDF TG +        +AY  G     
Sbjct: 186 VEL--------------LDASMEVLRGNRPNILPDFFTGGM-----ADFSAYNEGMRGGK 226

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I  T  D++ +V+TEIP+     ++++ I  L    +        +++      
Sbjct: 227 VRVRAKI--TEKDKKTLVITEIPFSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAANVE 282

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V++L  G S DV ++ LY +TS +   S N   + G KP   ++  IL       + ++
Sbjct: 283 IVVQLAPGISPDVTIDALYAFTSCEVSISPNTCIIKGDKPHFMSVNDILTENTMHTKALL 342

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAV-------------ANLDEVVRIIR--FSPN-PETA 413
            +  +  LN+ +++      L I +              N D VV ++   F P  P+  
Sbjct: 343 KQELEIRLNELQEKIFFSSLLKIFIQEGMYKHPEYENSGNFDAVVAVLNNLFEPFLPQ-- 400

Query: 414 RRELMQRSWNASDIKDLID 432
               + R     D K LID
Sbjct: 401 ----LYRPIQPEDFKKLID 415


>gi|34451797|gb|AAQ72394.1| GyrA [Klebsiella variicola]
 gi|34451799|gb|AAQ72395.1| GyrA [Klebsiella variicola]
 gi|34451801|gb|AAQ72396.1| GyrA [Klebsiella variicola]
 gi|34451809|gb|AAQ72400.1| GyrA [Klebsiella variicola]
 gi|34451811|gb|AAQ72401.1| GyrA [Klebsiella sp. 910]
          Length = 131

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 102/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|317474502|ref|ZP_07933776.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
 gi|316909183|gb|EFV30863.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
          Length = 904

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 188/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  V
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASV 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             + N +  L         PDF TG  I       + Y  G     +R  + IEK   D 
Sbjct: 214 KYLHNEEFKL--------YPDFQTGGNI-----DVSKYNDGERGGAVRVRAKIEKV--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIPY    A++ + I +   EK  + I  + D +  +   +++ L  G S+D  
Sbjct: 259 KTLVIREIPYGKTVASVCDSIVK-ASEKGKIKIKKVEDLTS-ENVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +LK  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTLALLRQELEIRKNEIL 374


>gi|295394226|gb|ADG03724.1| DNA topoisomerase IV subunit A [Streptococcus mutans]
          Length = 151

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/148 (56%), Positives = 108/148 (72%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G VMG +HPHG+++IYDA+ R
Sbjct: 4   RALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNVMGNFHPHGDSSIYDAMVR 63

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R  LIE  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N+D 
Sbjct: 64  MSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEIADYLLQDIDKNTVAWAWNFDD 123

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 124 TEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|219815931|gb|ACL37052.1| GyrA [Salmonella enterica]
          Length = 127

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 78/126 (61%), Positives = 103/126 (81%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+
Sbjct: 2   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 62  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 121

Query: 143 LDDLGK 148
           + DL K
Sbjct: 122 MADLEK 127


>gi|47419984|gb|AAT27344.1| DNA gyrase A [Campylobacter jejuni]
          Length = 246

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/269 (40%), Positives = 165/269 (61%), Gaps = 26/269 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V
Sbjct: 1   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTV 60

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +        
Sbjct: 61  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-------- 112

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 113 ------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLE 154

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 155 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 214

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           KRVP   Y  Q+RGGKG+  V   D+DF+
Sbjct: 215 KRVPSKQYEKQKRGGKGKLAVTTYDDDFI 243


>gi|300772555|ref|ZP_07082425.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760858|gb|EFK57684.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 907

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 185/352 (52%), Gaps = 32/352 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E E+   ++ IT   +N +L YA  VIL RA+P + DG KPV RRIL  + +M    + 
Sbjct: 18  QENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKEMD---DG 74

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAE 128
           +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    GD  AA 
Sbjct: 75  RYNKVANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTTGDSAAAP 129

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A  L      +T +++ +YDG  +EPV L  ++P +L  G  GIAVG+AT
Sbjct: 130 RYIEGRLSKFA--LEVTFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLAT 187

Query: 189 NIPTHNLGEVVDGCVAVIDN--PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            I  HN  E++DG + V++   P+I           PDF TG +        +AY  G+ 
Sbjct: 188 KIMPHNFNELIDGSIQVLNGERPNI----------LPDFLTGGM-----ADCSAYNEGQR 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  + IE+   D++ + +TEIP+      ++E +  +    +        +++  +
Sbjct: 233 GGKIRVRAKIEER--DKKTLAITEIPFGTTTGGLIESV--VAANDKGKIKIKKIEDNTAE 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
              +++ L  G S DV ++ LY +T+ +   S N   +   +P   ++  +L
Sbjct: 289 NVEIIVHLAPGISPDVTIDALYAFTACEVSISPNTCVIKNDRPHFMSVNDVL 340


>gi|69250184|ref|ZP_00605120.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
 gi|68193992|gb|EAN08552.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
          Length = 193

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 89/196 (45%), Positives = 127/196 (64%), Gaps = 6/196 (3%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 2   RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 61

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS
Sbjct: 62  DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 121

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  +     +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 122 VRMRAVWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 176

Query: 308 YRVVIELKRGASADVI 323
              ++ + R    D I
Sbjct: 177 PTRLVIVPRSNRVDWI 192


>gi|11863191|gb|AAD43664.2| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 143

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 106/143 (74%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  LL D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+L+NG  GI+ G AT+IP
Sbjct: 121 ARFPNLLINGSTGISSGYATDIP 143


>gi|299141868|ref|ZP_07035003.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
 gi|298576719|gb|EFI48590.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
          Length = 903

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 188/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 44  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 99

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 100 HPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSK---FALD 152

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ D  +
Sbjct: 153 VVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAI 212

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   D  L         PDFPTG  I       + Y  G+   V++  + IEK   D 
Sbjct: 213 KYLRGEDFQL--------YPDFPTGGAI-----DVSKYNDGQRGGVLKVRAKIEKL--DN 257

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S+D  
Sbjct: 258 KTLVIREIPFSKTTTTLIDSILKAIDKGKIK--AKRVDDNTAAEVEIQVHLAPGVSSDKT 315

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+ +RR + L
Sbjct: 316 MDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVDRTMGLLRKELQIRRGELL 373


>gi|219920999|emb|CAQ76677.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921001|emb|CAQ76678.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921003|emb|CAQ76679.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921005|emb|CAQ76680.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921007|emb|CAQ76681.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921013|emb|CAQ76684.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921015|emb|CAQ76685.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921017|emb|CAQ76686.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921019|emb|CAQ76687.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921021|emb|CAQ76688.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 101/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|11863195|gb|AAD43672.2| topoisomerase IV subunit A [Staphylococcus hominis subsp. hominis]
          Length = 143

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 106/143 (74%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|254729442|gb|ACT79805.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 132

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 103/125 (82%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAAH 140
            K AH
Sbjct: 128 AKIAH 132


>gi|115456153|ref|NP_001051677.1| Os03g0812000 [Oryza sativa Japonica Group]
 gi|113550148|dbj|BAF13591.1| Os03g0812000 [Oryza sativa Japonica Group]
          Length = 438

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 218/436 (50%), Gaps = 53/436 (12%)

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           +L++ L +LT L R    +E  SL  EI +  ++LS++  +  +I QE   +K++  TPR
Sbjct: 1   LLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPR 60

Query: 517 RTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R+ I +    +++D D I  E+M++ +S  GYVKR+  + +  Q RG  G+S   MR  D
Sbjct: 61  RSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMND 120

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             +D  +  TH  VL+FS  G VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P
Sbjct: 121 NTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVP 180

Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
              F ED+      Y+V  T +G +++  L+ F  I  SG I+++L   DE+  V  C  
Sbjct: 181 VNEFGEDQ------YLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGD 234

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           ++ + L ++ G  +    + +R   GR + GV  + L +GD++ SM I+           
Sbjct: 235 DDLVALASQNGMVIVNTCNKLRAL-GRKTRGVLAMKLKEGDKMASMDII----------- 282

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                      +   N+ E   +   L   ++L +++ G GKR 
Sbjct: 283 --------------------------PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRV 316

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVND----NDQIILVSDKGTLIRVPV 867
               FR  N +  G++   +     + A+  V F + D    ++Q++LVS  GT+ R+ V
Sbjct: 317 PLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKV 376

Query: 868 NEIRIASRATKGVVIF 883
            +I I SR+ +GV++ 
Sbjct: 377 KDISIRSRSARGVILM 392


>gi|295394232|gb|ADG03727.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|62288333|gb|AAX78442.1| ParC [Brevundimonas diminuta]
          Length = 144

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/137 (58%), Positives = 101/137 (73%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           K VHRRI++ M QM +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  
Sbjct: 4   KAVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYP 63

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFG++DGD  AA RYTEC+L  AA  LLD + +D VDFRP YD   +EPVVL A
Sbjct: 64  LVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPA 123

Query: 170 RYPNVLVNGGGGIAVGM 186
            +PN+L NG  GIAVGM
Sbjct: 124 GFPNLLANGSSGIAVGM 140


>gi|298373528|ref|ZP_06983517.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274580|gb|EFI16132.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 905

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 182/334 (54%), Gaps = 33/334 (9%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + +   +IL RAIP + DGLKPV RR+L+ M +M    + +Y K A + G  M ++HPHG
Sbjct: 55  MDFGSYIILNRAIPHINDGLKPVQRRVLYSMRRME---DGRYNKVANVVGHTM-QFHPHG 110

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDD-LG 147
           +++IY AL  + Q    + +LI+ QGN+G++  GDP AA RY E RL +   F LD    
Sbjct: 111 DSSIYGALVGLGQ----KNILIDTQGNWGNILTGDPAAAARYIEARLSR---FALDTVFN 163

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
             T +++P+YDG   EPV L  ++P +L  G  GI  G+ T I  HN  E++D  +  + 
Sbjct: 164 PKTTEWKPSYDGRNDEPVALPVKFPLLLAQGSEGIGYGLNTKILPHNFNELIDATILYLQ 223

Query: 208 NPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATG-RGSIVIRGVSHIEKTSGDREQ 265
                     E    PDFPTG +I + R      Y  G RG  V+  V +I K S D + 
Sbjct: 224 G--------KEFCLYPDFPTGGMIDVSR------YNDGERGGKVMMRV-NITK-SADNKS 267

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           +++  +PY ++ A ++E I +   EK  ++I  + D++  +G  +++ L+   S D  ++
Sbjct: 268 LIINNVPYGLDTAKLIESIIQ-ANEKGKINIKKI-DDNTAEGVEIILHLEAKTSLDKTID 325

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            LY +T  Q+ +S N   ++  KP   T+  +L+
Sbjct: 326 ALYAFTDCQTQYSPNCCVIDNNKPVFVTVSEVLR 359


>gi|167946605|ref|ZP_02533679.1| DNA gyrase, subunit A, type II topoisomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 102/127 (80%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K +  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK 
Sbjct: 3   EFAKEVLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQK 137
           TE R+ K
Sbjct: 123 TEVRMAK 129


>gi|281426196|ref|ZP_06257109.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
 gi|281399772|gb|EFB30603.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
          Length = 978

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 188/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 119 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 174

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 175 HPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSK---FALD 227

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ D  +
Sbjct: 228 VVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAI 287

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   D  L         PDFPTG  I       + Y  G+   V++  + IEK   D 
Sbjct: 288 KYLRGEDFQL--------YPDFPTGGAI-----DVSKYNDGQRGGVLKVRAKIEKL--DN 332

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S+D  
Sbjct: 333 KTLVIREIPFSKTTTTLIDSILKAIDKGKIK--AKRVDDNTAAEVEIQVHLAPGVSSDKT 390

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+ +RR + L
Sbjct: 391 MDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVDRTMGLLRKELQIRRGELL 448


>gi|34451803|gb|AAQ72397.1| GyrA [Klebsiella variicola]
 gi|34451805|gb|AAQ72398.1| GyrA [Klebsiella variicola]
 gi|34451807|gb|AAQ72399.1| GyrA [Klebsiella variicola]
          Length = 130

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/130 (62%), Positives = 101/130 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIA 120

Query: 184 VGMATNIPTH 193
           VGMATNIP H
Sbjct: 121 VGMATNIPPH 130


>gi|228473476|ref|ZP_04058229.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275083|gb|EEK13886.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 863

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 203/390 (52%), Gaps = 35/390 (8%)

Query: 1   MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M EH I   +S  E ++ IT +S     QN +L YA  VIL RA+P L DG KPV RRI+
Sbjct: 1   MEEHPIPPQASQGEPQETITRIS--GMYQNWFLDYASYVILERAVPALEDGFKPVQRRIM 58

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
             M ++    + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG++
Sbjct: 59  HSMDELE---DGRYNKVANIVGNTM-KYHPHGDASIGDAIIQLGQ----KELLIDTQGSW 110

Query: 118 GSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVL 175
           G++  GD  AA RY E RL K   F LD L    V  ++ +YDG   EPV L  ++P +L
Sbjct: 111 GNILTGDDAAAPRYIEARLSK---FALDVLFSPKVTQWQKSYDGRNDEPVHLPVKFPLLL 167

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T I  HN  E++D  V  ++    +L         PDFPT A I+  T
Sbjct: 168 AQGAEGIAVGLSTKILPHNFNELIDASVLYLEGKPFEL--------YPDFPT-AGIMDAT 218

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G  +    GR    IR  + I +   D+  +V+TEIP+    +++++ I +   EK  + 
Sbjct: 219 GYSDGMRGGR----IRVRARIAQR--DKSTLVITEIPFGTTTSSLIDSILK-ANEKGKIK 271

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +  + D++      +++ L +G S D  ++ LY +T  ++  S     + G +P    + 
Sbjct: 272 VLKV-DDNTAANVEILVHLPKGISPDKTIDALYAFTDCETSVSPLCCVIEGSRPLFIGVS 330

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            ILK       E++ +  +  L+    + H
Sbjct: 331 DILKKSTDRTVEILKKELEVKLDDLEQKWH 360


>gi|207110089|ref|ZP_03244251.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 100/125 (80%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 7   YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 66

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+I
Sbjct: 67  TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 126

Query: 191 PTHNL 195
           P H +
Sbjct: 127 PPHRM 131


>gi|219921009|emb|CAQ76682.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921011|emb|CAQ76683.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 101/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|295394236|gb|ADG03729.1| DNA topoisomerase IV subunit A [Streptococcus salivarius]
          Length = 151

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 108/148 (72%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 4   RALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 63

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N+D 
Sbjct: 64  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWNFDD 123

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 124 TEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|227537923|ref|ZP_03967972.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242225|gb|EEI92240.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 907

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 184/352 (52%), Gaps = 32/352 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E E+   ++ IT   +N +L YA  VIL RA+P + DG KPV RRIL  + +M    + 
Sbjct: 18  QENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKEMD---DG 74

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAE 128
           +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    GD  AA 
Sbjct: 75  RYNKAANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTTGDSAAAP 129

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A  L      +T +++ +YDG  +EPV L  ++P +L  G  GIAVG+AT
Sbjct: 130 RYIEGRLSKFA--LEVAFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLAT 187

Query: 189 NIPTHNLGEVVDGCVAVIDN--PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            I  HN  E++DG + V++   P+I           PDF TG +        +AY  G  
Sbjct: 188 KIMPHNFNELIDGSIQVLNGERPNI----------LPDFLTGGM-----ADCSAYNEGMR 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  + IE+   D++ + +TEIP+      ++E +  +    +        +++  +
Sbjct: 233 GGKIRVRAKIEER--DKKTLAITEIPFGTTTGGLIESV--VAANDKGKIKIKKIEDNTAE 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
              +++ L  G S DV ++ LY +T+ +   S N   +   +P   ++  +L
Sbjct: 289 NVEIIVHLAPGISPDVTIDALYAFTACEVSISPNTCVIKNDRPHFMSVNDVL 340


>gi|47420004|gb|AAT27354.1| DNA gyrase A [Campylobacter fetus]
          Length = 260

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/285 (38%), Positives = 172/285 (60%), Gaps = 28/285 (9%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RR
Sbjct: 1   ELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRR 60

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +            
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK------------ 108

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-IL 491
                           LSE+Q+ AIL++RL++LTGL R+ +  EL  + +E+ E LD IL
Sbjct: 109 --------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI-LELIEKLDAIL 153

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRV
Sbjct: 154 KSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRV 213

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           P   Y  Q+RGGKG+  V   D+DF+   F   +H +++F +  G
Sbjct: 214 PSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRG 258


>gi|33469562|gb|AAQ19806.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 146

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/146 (55%), Positives = 106/146 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A+IYD
Sbjct: 1   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDASIYD 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  
Sbjct: 61  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAW 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 NFDDTEKEPTVLPAAFPNLLVNGSSG 146


>gi|325969897|ref|YP_004246088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025135|gb|ADY11894.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 659

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 35/335 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
            + ++L YA  VI  RAIPDL DG KPV RRI+  + +M    + K+ K A + G  M +
Sbjct: 8   FKRNFLEYASYVIKERAIPDLGDGFKPVQRRIIHTLFEMD---DGKFHKVANVVGWAM-R 63

Query: 85  YHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFL 142
           YHPHG+++IY+AL  +A  D     L IE QGNFG S+ GD  AA RY ECRL   A  +
Sbjct: 64  YHPHGDSSIYEALVNLANCD-----LFIERQGNFGNSLTGDSAAAARYIECRLLPFAKKV 118

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L     +  +F  +YDG  QEPVV  A+ P VL+ G  GIAVGM+T I  HN  EV+D  
Sbjct: 119 L--YNPELTEFVDSYDGRNQEPVVFPAKIPVVLIQGVSGIAVGMSTYILPHNPLEVLDAM 176

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            A +      L         PDF  G ++     +++ Y  GRGS+ +R     +  + D
Sbjct: 177 AASLKGESYQL--------YPDFLGGGIV----DVED-YRDGRGSVSVRA----KLNTTD 219

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            ++I++ E+PY     AM+  + E  ++ ++  I+ + D +  +   + I L R   A  
Sbjct: 220 PKRIIIEELPYGTTSEAMIRSVEEAAKKGKL-KISSINDYTAEK-VNIEINLARNTYAQE 277

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           I++ LY YT  ++  S+N + +    P   T++G+
Sbjct: 278 IVDALYAYTDCETKLSINPLVIRDNVP---TIMGV 309


>gi|288930007|ref|ZP_06423848.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328666|gb|EFC67256.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 896

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 199/394 (50%), Gaps = 54/394 (13%)

Query: 7   SSDEEEEKGITSVS---------------ITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
             DE EE+G+ + S               ++   QN +L YA  VIL RA+P++ DGLKP
Sbjct: 6   QQDENEEEGVETHSDYKPADRFDASAVHHLSGMYQNWFLDYASYVILERAVPNIADGLKP 65

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q    + LLI
Sbjct: 66  VQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLI 117

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCA 169
           + QGN+G++  GD  AA RY E RL K   F LD      T  ++ +YDG  +EP+ L  
Sbjct: 118 DTQGNWGNILTGDRAAAPRYIEARLSK---FALDTVFNPKTTQWQASYDGRNKEPIALPV 174

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           ++P +L  G  GIAVG+++ I  HN+ E+    +  +      L         PDFPTG 
Sbjct: 175 KFPLLLAQGAEGIAVGLSSKILPHNMRELCQAAIHYLKGEPFRL--------FPDFPTGG 226

Query: 230 VILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
            I       + Y  G+  GSI +R  + IEK   D + +V+ EIP+  N   ++E I + 
Sbjct: 227 SIDA-----SRYNDGQRGGSIKVR--AKIEKL--DNKTLVIREIPFSKNTTTLIESILKA 277

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           V + +I   A   D++      + + L  G S+D  ++ LY ++  +   S N   +   
Sbjct: 278 VDKGKIK--AKRVDDNTAAEVEIQVHLAPGISSDKTIDALYAFSDCEINISPNCCVIEDN 335

Query: 348 KPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           KP   T+  +L+  V       R E+ +R+ + L
Sbjct: 336 KPRFLTVSEVLRHNVDSTMGLLRMELQIRKDELL 369


>gi|260591221|ref|ZP_05856679.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
 gi|260537086|gb|EEX19703.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
          Length = 910

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 178/337 (52%), Gaps = 32/337 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ +  V 
Sbjct: 155 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICEAAVQ 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            + N D  L         PDFPTG  I         Y  G+   V++  + IEK   D +
Sbjct: 215 YLRNEDFHL--------YPDFPTGGSIDAA-----KYNDGQRGGVLKVRAKIEKL--DNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK--RGASADV 322
            +V+ E+P+     ++ E I + V + +I     +R   D     V I+L    G S+D 
Sbjct: 260 TLVIREVPFTKTANSLQESITKAVEKGKI----KVRKVEDMTASEVEIQLHLTPGTSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            ++ LY +T  +   S N   +   KP+  T+  +L+
Sbjct: 316 TIDALYAFTDCEINISPNCCVIEDNKPKFLTISDVLR 352


>gi|218131890|ref|ZP_03460694.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
 gi|217986193|gb|EEC52532.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
          Length = 904

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  V
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASV 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             + N +  L         PDF TG  I       + Y  G     +R  + IEK   D 
Sbjct: 214 KYLHNEEFKL--------YPDFQTGGNI-----DVSKYNDGERGGAVRVRAKIEKV--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLVIREIPYGKTVASVCDSIVK-ASEKGKIKIKKVEDLTS-GNVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +LK  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTLALLRQELEIRKNEIL 374


>gi|295394234|gb|ADG03728.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 108/151 (71%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|219921027|emb|CAQ76691.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/127 (62%), Positives = 98/127 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  A
Sbjct: 5   WNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAA 64

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGM
Sbjct: 65  AMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 124

Query: 187 ATNIPTH 193
           ATNIP H
Sbjct: 125 ATNIPPH 131


>gi|254729444|gb|ACT79806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 103/124 (83%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127

Query: 136 QKAA 139
            K A
Sbjct: 128 AKIA 131


>gi|329964604|ref|ZP_08301658.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
 gi|328525004|gb|EGF52056.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
          Length = 893

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 188/367 (51%), Gaps = 40/367 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIADALVQLGQ----KDLLVDCQGNWGNILTGDSAAASRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   D  L         PDF TG  I       + Y  G     +R  S IEK   D 
Sbjct: 214 KYLHKEDFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVRVRSKIEKI--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLAIKEIPYGKTVASVCDSIVK-ASEKGKIKIRKVEDLTS-GSVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA-----FREEVVVRRTKYLLN 378
           ++ LY +T  +   S N   ++  KP   T+  +L+  V       R+E+ +RR     N
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDNQKPHFLTVSDVLRKSVNNTLDLLRQELEIRR-----N 371

Query: 379 KARDRAH 385
           + R+  H
Sbjct: 372 EIRENLH 378


>gi|148985115|ref|ZP_01818354.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922560|gb|EDK73678.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 141

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/137 (56%), Positives = 111/137 (81%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGK 148
           E R+ K A  +L D+ K
Sbjct: 122 EARMSKIALEMLRDINK 138


>gi|77166860|gb|ABA62406.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 144

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/142 (56%), Positives = 104/142 (73%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+  
Sbjct: 3   DEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTS 62

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYTE RL  A+  L
Sbjct: 63  GDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQL 122

Query: 143 LDDLGKDTVDFRPNYDGSFQEP 164
           ++DL K+TV+  PNY+ + +EP
Sbjct: 123 MEDLDKNTVEMVPNYNETKKEP 144


>gi|11863193|gb|AAD43671.2| topoisomerase IV subunit A [Staphylococcus hominis]
 gi|12585588|gb|AAG49419.1| topoisomerase IV subunit A [Staphylococcus hominis subsp.
           novobiosepticus]
          Length = 143

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 105/143 (73%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDFSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|282860360|ref|ZP_06269428.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586858|gb|EFB92095.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
          Length = 917

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 178/340 (52%), Gaps = 32/340 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQMGQ----KYLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++    ++
Sbjct: 155 VFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICSAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   D  +         PDFPTG  I       + Y  G+    ++  + IEK   D +
Sbjct: 215 YLKGKDFSI--------YPDFPTGGSI-----DVSKYNDGQRGGALKVRAKIEKL--DNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK--RGASADV 322
            +V+ E+P+    +++ E I + + + +I     +R   D     V I+L    G S+D 
Sbjct: 260 TLVIREVPFTKTASSLQESITKAIEKGKI----KVRKVEDMTASEVEIQLHLTPGTSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            ++ LY +T  +   S N   +   KP   T+  +LK  V
Sbjct: 316 TIDALYAFTDCEINISPNCCVIEDNKPGFLTVSDVLKYSV 355


>gi|313204243|ref|YP_004042900.1| DNA topoisomerase iv subunit a [Paludibacter propionicigenes WB4]
 gi|312443559|gb|ADQ79915.1| DNA topoisomerase IV subunit A [Paludibacter propionicigenes WB4]
          Length = 951

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 181/331 (54%), Gaps = 35/331 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+PD+ DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 54  QNWFLDYASYVILERAVPDIYDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 109

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 110 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA--LET 163

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+ + I  HN  E++D CVA
Sbjct: 164 VFNPKTTEWKSSYDGRNKEPIALPVKFPLLLAQGVEGIAVGLNSKILPHNFNELLDACVA 223

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGR--GSIVIRGVSHIEKTSG 261
            +   D         I  PDF TG  I + R      Y  G   G++ IR  + I K   
Sbjct: 224 NLKGED--------FILYPDFQTGGSIDVSR------YNDGERGGAVKIR--AKIGKI-- 265

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           D + + +TEIP+  N + ++E I +   +K  + I  + D++      +++ L  G+S+D
Sbjct: 266 DNKTLAITEIPFGTNTSKLIESIIK-ASDKGKIKIRKV-DDNTSANVEILVHLLPGSSSD 323

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             ++ LY +T  +   S N   ++  KP RF
Sbjct: 324 KTIDALYAFTDCELSISPNCCVIHDNKP-RF 353


>gi|219921023|emb|CAQ76689.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/131 (61%), Positives = 100/131 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  G 
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGX 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|297621778|ref|YP_003709915.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297377079|gb|ADI38909.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 633

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 182/344 (52%), Gaps = 48/344 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++Y+ YA  VIL RAIPD+ DGLKPV RRIL  + ++    + K  K A ++G+ M  Y
Sbjct: 9   KDNYIKYASYVILDRAIPDVVDGLKPVQRRILHTLYKI---HDGKLHKVANVAGQTMA-Y 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+AAI DAL  MA     +   ++ QGNFG++  GDP AA RY E RL         
Sbjct: 65  HPHGDAAIIDALVNMAN----KGFFLDCQGNFGNIYTGDPAAAARYIETRLSP------- 113

Query: 145 DLGKDTVDFRPN-------YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            L KDT+ F P+       YDG  QEPV L A+ P VL+ G  GIAVGM+TNI  HN  E
Sbjct: 114 -LAKDTL-FNPDLTETVSSYDGRNQEPVCLPAKVPVVLMQGASGIAVGMSTNILPHNFIE 171

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++   +AV++  D ++         PDF TG ++       + Y  GRG + +R    I+
Sbjct: 172 LLQAEIAVLEGKDFEI--------YPDFITGGIM-----DVSEYDKGRGRLKLRAKIDIQ 218

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-- 315
               D + +V++EI +     +++  I E  +  +I     +   +D    +V IE+K  
Sbjct: 219 ----DPKTLVISEICHGTTTESLIRSIDEAAKRGKI----KIDSINDYTADKVEIEIKLP 270

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RG  A  +++ LY YT  +   +   + +  + P   T+  IL+
Sbjct: 271 RGHYAQDLIDSLYAYTDCEVSINCMCMVIKDHLPWETTVDEILR 314


>gi|34451813|gb|AAQ72402.1| GyrA [Enterobacter sp. B5R5]
          Length = 130

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 101/130 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH L+ DL K+TVD+  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDYVDNYDGTERIPDVMPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTH 193
           VGMATNIP H
Sbjct: 121 VGMATNIPPH 130


>gi|189462865|ref|ZP_03011650.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
 gi|189430481|gb|EDU99465.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
          Length = 879

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 200/389 (51%), Gaps = 46/389 (11%)

Query: 5   IISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           I SSD+E       V   DE          QN +L YA  VIL RA+P + DGLKPV RR
Sbjct: 11  IQSSDKEAHSDYKPVDQGDETVKHQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRR 70

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QG
Sbjct: 71  ILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQG 122

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           N+G++  GD  AA RY E RL K   F LD      T +++ +YDG  +EPV L  ++P 
Sbjct: 123 NWGNILTGDDAAAPRYIEARLSK---FALDVVFNPKTTEWQASYDGRNREPVTLPVKFPL 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-L 232
           +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L         PDF TG  I +
Sbjct: 180 LLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFHL--------YPDFQTGGSIDV 231

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
            R      Y  G    V+R  + I K   D + + ++EIPY    +++++ I + + EK 
Sbjct: 232 SR------YNDGERGGVVRVRAKISKI--DNKTLCISEIPYGKTTSSLIDSILKAI-EKG 282

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + +  + D++      +++ L  G S+D  L+ LY +T  +   S N   ++  KP   
Sbjct: 283 KIKVRKV-DDNTADKVEILVHLAPGVSSDKTLDALYAFTDCEVNISPNCCVIDNKKPHFL 341

Query: 353 TLIGILKAFV-----AFREEVVVRRTKYL 376
           ++  +L+  V       R+E+ ++R + L
Sbjct: 342 SVSVVLRKSVDNTLSLLRQELNIQRNETL 370


>gi|329956024|ref|ZP_08296795.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
 gi|328524783|gb|EGF51837.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
          Length = 904

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 186/358 (51%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  V
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASV 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   +  L         PDF TG  I       + Y  G     +R  + IEK   D 
Sbjct: 214 KYLHKEEFKL--------YPDFQTGGNI-----DVSKYNDGERGGAVRVRAKIEKV--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLVIREIPYGKTVASVCDSIVK-ASEKGKIKIKKVEDLTS-GSVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +LK  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDEQKPHFLTVSAVLKKSVDNTLALLRQELEIRKNEIL 374


>gi|160891364|ref|ZP_02072367.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
 gi|156858771|gb|EDO52202.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
          Length = 893

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 187/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + + N +  L         PDF TG  I       + Y  G     IR  S IEK   D 
Sbjct: 214 SYLHNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAIRVRSKIEKI--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLAIKEIPYGKTVASVCDSIVK-ASEKGKIKIRKVEDLTS-GSVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +L+  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTLALLRQELEIRKGEIL 374


>gi|46445985|ref|YP_007350.1| DNA topoisomerase IV subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399626|emb|CAF23075.1| putative DNA gyrase (topoisomerase) chain A [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 633

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 177/350 (50%), Gaps = 34/350 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ  Y+ YA  VIL RAIP++ DGLKPV RRIL+ +  M    + K  K A ++G+ M  
Sbjct: 8   MQRHYIKYASYVILDRAIPNVIDGLKPVQRRILYTLWLMH---DGKLHKVANVAGQTMA- 63

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
            HPHG+A I +AL  +A     +  L++ QGNFG++  GDP AA RY E RL   A   L
Sbjct: 64  LHPHGDAPITEALINIAN----KGYLLDQQGNFGNLFTGDPAAAARYIETRLTPLAKETL 119

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                D     P+YDG  QEP  L A+ P VL+ G  GIAVGM+T+I  HN  E+++  +
Sbjct: 120 --FNADLTSTIPSYDGRHQEPTCLPAKIPVVLLQGADGIAVGMSTHIFPHNFLELLEAEI 177

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA--YATGRGSIVIRGVSHIEKTSG 261
           A+++     +         PDFPTG       GI +A  Y  G+G + +R    +     
Sbjct: 178 AILEGKPFSI--------LPDFPTG-------GIMDASDYNKGKGKVRLRAKIEVR---- 218

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           D + +V+TEI Y     +++  I E  ++ +I    D  ++   +   + I+L RG  A 
Sbjct: 219 DAKSLVITEICYGTTTESLIRSIDEAAKKGKIK--IDAINDYTAEKVEIEIKLPRGQYAQ 276

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +L  LY YT  Q      +V +    P    +  IL+      +E + R
Sbjct: 277 DLLEALYAYTECQVTLHSQIVVIKDNYPWETDVDSILRLHTEKLQEYLQR 326


>gi|219815927|gb|ACL37050.1| GyrA [Salmonella enterica]
          Length = 123

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 101/123 (82%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+
Sbjct: 1   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 120

Query: 143 LDD 145
           + D
Sbjct: 121 MAD 123


>gi|270295502|ref|ZP_06201703.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274749|gb|EFA20610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 893

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 187/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + + N +  L         PDF TG  I       + Y  G     IR  S IEK   D 
Sbjct: 214 SYLHNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAIRVRSKIEKI--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLAIKEIPYGKTVASVCDSIVK-ASEKGKIKIRKVEDLTS-GSVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +L+  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTLALLRQELEIRKGEIL 374


>gi|78771378|gb|ABB51164.1| GyrA [Escherichia coli]
          Length = 128

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 101/120 (84%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127


>gi|317478494|ref|ZP_07937654.1| topoisomerase IV [Bacteroides sp. 4_1_36]
 gi|316905383|gb|EFV27177.1| topoisomerase IV [Bacteroides sp. 4_1_36]
          Length = 893

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 187/358 (52%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + + N +  L         PDF TG  I       + Y  G     IR  S IEK   D 
Sbjct: 214 SYLHNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAIRVRSKIEKI--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLAIKEIPYGKTVASVCDSIVK-ASEKGKIKIRKVEDLTS-GSVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +L+  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTLALLRQELEIRKGEIL 374


>gi|320353625|ref|YP_004194964.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320122127|gb|ADW17673.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 30/333 (9%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           ++L Y   VI  RAIPD+ DGLKPV RRIL  +  M    + ++ K A + GE M K HP
Sbjct: 19  NFLDYTSYVIRERAIPDVDDGLKPVQRRILQTLANMD---DGRFHKVANVVGETM-KLHP 74

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDL 146
           HG+ +I+DAL  +A     +  LI+ QGNFG++  GD  +A RY ECRL   A   L   
Sbjct: 75  HGDQSIFDALVNLAN----KGYLIDRQGNFGNIFTGDQASAPRYIECRLSPLARETL--F 128

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KD  +F  +YDG  QEPV L A+ P +L+ G  GIAVGMAT I  HN GE++       
Sbjct: 129 NKDLTEFIDSYDGRMQEPVRLPAKIPLLLLLGAEGIAVGMATKIMPHNFGELLQA----- 183

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
               ID     E +  PDFP G +I     + + Y  G G I  R  + +E+   D + I
Sbjct: 184 ---QIDYLRGQEFVLYPDFPRGGII----DVAD-YNHGNGRIRCR--AKLEQP--DSKTI 231

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+TE+PY +   A++E I +  +  ++  IA + D +  +   V I+L RG  A+  ++ 
Sbjct: 232 VITELPYNLTTQALIESIEKAAKANKL-KIASINDYTAEK-VEVEIKLARGVLAEETIDA 289

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           LY +T  +   S ++V +    P +  +  +L+
Sbjct: 290 LYAFTDCELSVSPSLVTIVDNMPRQMAVEEVLR 322


>gi|295394240|gb|ADG03731.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae]
          Length = 151

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 107/151 (70%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G VMG +HPHG+++IYDA
Sbjct: 1   ITRRALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|167764214|ref|ZP_02436341.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
 gi|167698330|gb|EDS14909.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
          Length = 904

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 185/358 (51%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  V
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASV 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   +  L         PDF TG  I       + Y  G     +R  + IEK   D 
Sbjct: 214 KYLHKEEFKL--------YPDFQTGGNI-----DVSKYNDGERGGAVRVRAKIEKV--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLVIREIPYGKTVASVCDSIVK-ASEKGKIKIKKVEDLTS-GSVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +LK  V       R E+ +RR + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTLALLRRELEIRRNEIL 374


>gi|321116500|dbj|BAJ72202.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 160

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 110/158 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNG 158


>gi|282880747|ref|ZP_06289446.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305379|gb|EFA97440.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 906

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 185/358 (51%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T D++ +YDG  +EP+ L A++P +L  G  GIAVG+++ I  HNL E+    +
Sbjct: 154 VVFNPKTTDWQLSYDGRNKEPITLPAKFPLLLTQGAEGIAVGLSSKILPHNLNEICQAAI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +      L         PDFPTG  I         Y  G+    ++  + IEK   D 
Sbjct: 214 HYLKGEPFTL--------YPDFPTGGSIDVE-----KYNDGQRGGTLKVRAKIEKL--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S+D  
Sbjct: 259 KTLVIKEIPFSKTTTTLIDSILKAIDKGKIK--ARKVDDNTAAEVEIQVHLSPGISSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+ +RR + L
Sbjct: 317 IDALYAFSDCEINISPNCCVIEDNKPVFLTVSDVLRHSVDSTMGLLRKELEIRRNELL 374


>gi|219921029|emb|CAQ76692.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 127

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 100/127 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 120

Query: 195 LGEVVDG 201
           L EV++G
Sbjct: 121 LTEVING 127


>gi|219815941|gb|ACL37057.1| GyrA [Salmonella enterica]
          Length = 122

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 100/122 (81%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 141 FL 142
            L
Sbjct: 121 EL 122


>gi|325954945|ref|YP_004238605.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437563|gb|ADX68027.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 847

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/375 (32%), Positives = 197/375 (52%), Gaps = 30/375 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G +   I+   Q  +L YA  VIL RAIP + DGLKPV RRIL  M ++    + +Y 
Sbjct: 4   QEGESIKKISGMYQEWFLDYASYVILERAIPSIYDGLKPVQRRILHSMRELE---DGRYN 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 61  KVANIVGNTM-KYHPHGDASITDAIVQIGQ----KDLLIDTQGNWGNILTGDRAAAARYI 115

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  ++      T  ++P+YDG  +EP+ L  ++P +L  G  GIAVG++T I 
Sbjct: 116 EARLTKFALEVV--YNPKTTHWQPSYDGRNKEPIDLPVKFPLLLAQGVEGIAVGLSTKIL 173

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +      L         PDF TG  I       N    G G + IR
Sbjct: 174 PHNFIELIDASIAYLRGKKFTL--------YPDFQTGGYI--EVADYNDGMRG-GKVRIR 222

Query: 252 G-VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             +S ++KT+     + ++EIP+     ++++ I +   +K  + I  + D +      +
Sbjct: 223 AKISQVDKTT-----LKISEIPFSTTTGSLIDSILK-ANDKGKIKIRKIEDNT-AADVEI 275

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I L+ G S D  ++ LY +T  +   S N   ++  KPE  ++  ILK       +++ 
Sbjct: 276 LIHLQTGTSPDKTIDALYAFTDCEVSLSPNACVIDEQKPEFLSVSEILKRNTDNTVQLLK 335

Query: 371 RRTKYLLNKARDRAH 385
           R  +  L++ +++ H
Sbjct: 336 RELEISLDELQEQWH 350


>gi|42527621|ref|NP_972719.1| DNA topoisomerase IV subunit A [Treponema denticola ATCC 35405]
 gi|41818449|gb|AAS12638.1| topoisomerase IV, A subunit, putative [Treponema denticola ATCC
           35405]
          Length = 703

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 34/338 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
              ++L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G  M K
Sbjct: 8   FNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM-K 63

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+ + A  + 
Sbjct: 64  YHPHGDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNEFAKTIF 119

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                   D+  +YDG  +EP+   A+ P +L  G  GIAVGM+T I  HN+ E+++   
Sbjct: 120 --YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAEK 177

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A +      L         PDFPTG +I       + Y  G G +++R     +  + D 
Sbjct: 178 AFLSGKSFAL--------FPDFPTGGLI-----DVSEYEDGLGKVLVRA----KLDTSDE 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK--RGASAD 321
           ++IV+ E+P+     +M+  I E   +   V I+++   SD  G  V IELK  RG  + 
Sbjct: 221 KRIVIRELPFGSTTESMINSI-EAASKAGKVKISEI---SDYTGENVEIELKLPRGVYSA 276

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++ LY +T  +     N++ +    P + T+  I+K
Sbjct: 277 DVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIK 314


>gi|325474427|gb|EGC77614.1| topoisomerase IV [Treponema denticola F0402]
          Length = 700

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 176/334 (52%), Gaps = 34/334 (10%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G  M KYHPH
Sbjct: 9   FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM-KYHPH 64

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLG 147
           G+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+   A  +     
Sbjct: 65  GDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNDFAKTIF--YN 118

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
               D+  +YDG  +EP+   A+ P +L  G  GIAVGM+T I  HN+ E+++   A + 
Sbjct: 119 PHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAEKAFLS 178

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
                L         PDFPTG +I       + Y  G G +++R     +  + D ++IV
Sbjct: 179 GKSFAL--------FPDFPTGGLI-----DVSEYEDGLGKVLVRA----KLDTSDEKRIV 221

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK--RGASADVILN 325
           + E+P+     +M+  I E   +   V I+++   SD  G +V IELK  RG  +  +++
Sbjct: 222 IRELPFGSTTESMINSI-EAASKAGKVKISEI---SDYTGEKVEIELKLPRGVYSADVVD 277

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            LY +T  +     N++ +    P + T+  I+K
Sbjct: 278 ALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIK 311


>gi|110638041|ref|YP_678249.1| DNA topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280722|gb|ABG58908.1| topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 859

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 202/392 (51%), Gaps = 49/392 (12%)

Query: 1   MTEHIISSDEEEEKGITS----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M + I ++  EE+ G       V +    +N +L YA  VIL RA+P + DGLKPV RRI
Sbjct: 1   MAKDINNNSSEEQSGNEHIHDVVHVNGLYENWFLEYASYVILERAVPHINDGLKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L  M  M    + ++ K A + G  M +YHPHG+A+I DA+  M Q    + LLIE QGN
Sbjct: 61  LHAMRVMD---DGRFNKIANVIGSTM-QYHPHGDASIGDAIVNMGQ----KDLLIEPQGN 112

Query: 117 FGSV-DGDPPAAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           +G +  GD  AA RY E RL K   F LD    +DT +++ +YDG  +EPV L  ++P +
Sbjct: 113 WGDIRTGDSAAAPRYIEGRLSK---FALDVVFNEDTTEWQASYDGRKKEPVTLPVKFPLL 169

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T +  HN  E+++  +AV+ N   ++         PDF TG  I   
Sbjct: 170 LAQGVEGIAVGLSTKVLPHNFVELIEASIAVLKNKKFEI--------FPDFATGGFI--- 218

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL-----VR 289
             + N Y  G+    +R  + IE    D++ +V+ +IP+     +++E I +      ++
Sbjct: 219 -DVSN-YNEGQKGSRVRVRARIEDM--DKKTLVIKDIPFGTTTTSLIESIVKANDTGKIK 274

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
            K+++D       +  +   + ++L  G    + ++ LY +T  +S  S N   +   KP
Sbjct: 275 IKKVID-------NTAKDVEIQVQLLPGTDPGITIDALYAFTECESSISPNACVIVDDKP 327

Query: 350 ERFTLIGILKAFV-----AFREEVVVRRTKYL 376
              ++  IL+          ++E+ +RR++ L
Sbjct: 328 HFLSVHEILRICTRQTVDLLKQELQIRRSELL 359


>gi|326799067|ref|YP_004316886.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326549831|gb|ADZ78216.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 902

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 181/348 (52%), Gaps = 40/348 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++ I+   +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    + ++ K A +
Sbjct: 23  TIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD---DGRFNKAANV 79

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQ 136
            G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    GD  AA RY E RL 
Sbjct: 80  IGNTM-KYHPHGDASIGDAMVQIGQ----KNLLIDCQGNWGDPTTGDSAAAPRYIEGRLS 134

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A+ ++     DT +++ +YDG  +EPV L  ++P +L  G  GIAVG+AT I  HN  
Sbjct: 135 KFANDVV--FNPDTTEWQLSYDGRNREPVTLPVKFPLLLAQGAEGIAVGLATKIMPHNFV 192

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIKNAYATGRGSIVI 250
           E++DG +              E++RG      PDFPTG +        +AY  G     +
Sbjct: 193 ELLDGSI--------------EVLRGGRPNLVPDFPTGGL-----ADVSAYNEGMRGGKV 233

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +  + IE+   D++ + +TEIPY      +++ +  +    +        +++      +
Sbjct: 234 KVRARIEER--DKKTLAITEIPYGTTTGGLIDSV--IAANDKGKIKIKKIEDNTAATVEI 289

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           V+ L  G S DV ++ LY +T  +   S N   +   KP   ++  +L
Sbjct: 290 VVHLAPGISPDVTIDALYAFTDCEVSISPNTCVIRDDKPHFMSVNDVL 337


>gi|260910051|ref|ZP_05916733.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635819|gb|EEX53827.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 913

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 189/360 (52%), Gaps = 39/360 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P++ DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 57  QNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 112

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 113 HPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSK---FALD 165

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T  ++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN+ E+ +  +
Sbjct: 166 TVFNPKTTQWQASYDGRNKEPISLPVKFPLLLAQGAEGIAVGLSSKILPHNMRELCEAAI 225

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSG 261
             +      L         PDFPTG  I       + Y  G+  GSI +R  + IEK   
Sbjct: 226 HYLKGEPFRL--------YPDFPTGGSIDA-----SRYNDGQRGGSIKVR--AKIEKL-- 268

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           D + +V+ EIP+  N   +++ I + V + +I   A   D++      + + L  G S+D
Sbjct: 269 DSKTLVIREIPFSKNTTTLIDSILKAVDKGKIK--AKRVDDNTAAEVEIQVHLAPGVSSD 326

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
             ++ LY ++  +   S N   +   KP   T+  +L+  V       R E+ +R+ + L
Sbjct: 327 KTIDALYAFSDCEINISPNCCVIEDNKPRFLTVSEVLRHNVDSTMGLLRLELQIRKDELL 386


>gi|325268779|ref|ZP_08135405.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
 gi|324988884|gb|EGC20841.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
          Length = 903

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 185/347 (53%), Gaps = 28/347 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  V+
Sbjct: 155 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  L         PDFPTG  I       + Y  G+   V++  + +EK   D +
Sbjct: 215 CLRGEEFHL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRARVEKL--DSK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V EK  + I  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTASSLQESITKAV-EKGKLKIRKVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + LY +T  +   S N   +   KP   T+  +L+  V   + ++ R
Sbjct: 318 DALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKR 364


>gi|288801298|ref|ZP_06406752.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331681|gb|EFC70165.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 906

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 188/360 (52%), Gaps = 39/360 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           Q  +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QGWFLAYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL   + F LD
Sbjct: 101 HPHGDASIGDALVQMGQ----KNLLIDMQGNWGNILTGDRAAAPRYIEARL---SQFALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  QEP+ L A++P +L  G  GIAVG+++ I  HN  E+    +
Sbjct: 154 VVFNPKTTNWQLSYDGRNQEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNPNEICQAAI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSG 261
           + +   +  L         PDFPTG  I       + Y  G   GSI +R  + IEK   
Sbjct: 214 SYLRGEEFQL--------YPDFPTGGSI-----DVSKYNDGLRGGSIKVR--AKIEKL-- 256

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           D + +V+ EIPY     ++++ I + + + +I   A   D++      + I L  G S+D
Sbjct: 257 DSKTLVIREIPYSKTTTSLIDSILKAIDKGKIK--AKKVDDNTAAEVEIQIHLASGVSSD 314

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
             ++ LY ++  +   S N   +   KP   T+  +L   V       R+E+ +R+ + L
Sbjct: 315 KTIDALYAFSDCEVNISPNCCVIEDQKPRFMTVSEVLCHSVDSTMGLLRKELQIRKDELL 374


>gi|323255023|gb|EGA38813.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 311

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 181/341 (53%), Gaps = 61/341 (17%)

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
           S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L  
Sbjct: 1   SAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEA 60

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            ERIT I+P  E E   N   V  AT  G V++  L++F +   +G IA+ L+  DE++ 
Sbjct: 61  NERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIG 117

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V+  +  ++++L +  G+ VRF   A+R   GR + GVRGI LA GD  +   I+     
Sbjct: 118 VDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRGIKLA-GDDKVVSLIIPRG-- 173

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                             E  ILTV++ 
Sbjct: 174 --------------------------------------------------EGAILTVTQN 183

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    V+D DQI++++D GTL+R  
Sbjct: 184 GYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTR 241

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+ E
Sbjct: 242 VSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDEE 280


>gi|302345857|ref|YP_003814210.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149088|gb|ADK95350.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 908

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  ++
Sbjct: 155 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +L         PDFPTG  I       + Y  G+   V++  + +EK   D +
Sbjct: 215 YLRGEEFNL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRAKVEKL--DNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+      + E I + V EK  + I  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTANTLQESITKAV-EKGKLKIRRVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   +   KPE  T+  +L+
Sbjct: 318 DALYAFTDCEINISPNCCVIRDNKPEFLTVSDVLR 352


>gi|265765085|ref|ZP_06093360.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
 gi|263254469|gb|EEZ25903.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
          Length = 851

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 38/340 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 58

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 111

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 112 VVFNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 171

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSG 261
           + + N +  L         PDF TG  I       + Y  G   G++ IR  S I K   
Sbjct: 172 SYLRNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVKIR--SKINKV-- 214

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKRGAS 319
           D + + +TEIPY     ++++ I + V + +I     +R  D++      +++ L  G S
Sbjct: 215 DNKTLAITEIPYGRTTTSVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAPGTS 270

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           +D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 271 SDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLK 310


>gi|325299748|ref|YP_004259665.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324319301|gb|ADY37192.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 879

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 191/359 (53%), Gaps = 37/359 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 42  QNWFLDYASYVILERAVPHINDGLKPVQRRILHAMKRLD---DGRYNKVANIVGHTM-QF 97

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 98  HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDDAAAPRYIEARLSK---FALD 150

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 151 VVFNPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAI 210

Query: 204 AVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF T GAV + R      Y  G    V+R  + I K   D
Sbjct: 211 AYLHGEEFHL--------YPDFQTGGAVDVSR------YNDGERGGVVRVRAKISKI--D 254

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + ++EIPY    +++++ I + V EK  + +  + D++      +++ L  GAS+D 
Sbjct: 255 NKTLCISEIPYGKTTSSLIDSILKAV-EKGKIKVRKV-DDNTADKVEILVHLAPGASSDK 312

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
            L+ LY +T  +   S N   +   KP   ++  +L+  V       R E+ ++R + L
Sbjct: 313 TLDALYAFTDCEVNISPNCCVIEDKKPHFLSVGTVLRKSVDHTLGLLRRELEIQRDETL 371


>gi|288803215|ref|ZP_06408649.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
 gi|288334256|gb|EFC72697.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
          Length = 908

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  ++
Sbjct: 155 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +L         PDFPTG  I       + Y  G+   V++  + +EK   D +
Sbjct: 215 YLRGEEFNL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRAKVEKL--DNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+      + E I + V EK  + I  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTANTLQESITKAV-EKGKLKIRRVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   +   KPE  T+  +L+
Sbjct: 318 DALYAFTDCEINISPNCCVIRDNKPEFLTISDVLR 352


>gi|304384322|ref|ZP_07366733.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
 gi|304334638|gb|EFM00920.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
          Length = 901

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  G   AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGSSAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  V+
Sbjct: 155 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELCDAAVS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  +         PDFPTG  I       + Y  G+    ++  + IEK   D +
Sbjct: 215 CLRGEEFHV--------YPDFPTGGSI-----DVSKYNDGQRGGTVKVRAKIEKQ--DNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ +IP+      +++ I + V EK  + +  + D +      +++ L  G S+D  L
Sbjct: 260 TLVIKDIPFSKTSETLIDSITKAV-EKNKIKVRKVEDLT-AANVEILVHLAPGVSSDKTL 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   +   KP+  T+  +L+
Sbjct: 318 DALYAFTDCEINISPNCCVIEDNKPKFLTVSDVLR 352


>gi|49532775|dbj|BAD26625.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532777|dbj|BAD26626.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532779|dbj|BAD26627.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532781|dbj|BAD26628.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532783|dbj|BAD26629.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532787|dbj|BAD26631.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532789|dbj|BAD26632.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532793|dbj|BAD26634.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532795|dbj|BAD26635.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532797|dbj|BAD26636.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532805|dbj|BAD26640.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532807|dbj|BAD26641.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 101/132 (76%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+A++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDASVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|296085402|emb|CBI29134.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/107 (68%), Positives = 91/107 (85%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y KCAR+ GEV+GK+HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + A+YD+L RMAQD+SLR  LI+G GNFGSVD DPPAA RYTECRL+
Sbjct: 61  DTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLE 107


>gi|255010001|ref|ZP_05282127.1| DNA topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313147794|ref|ZP_07809987.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313136561|gb|EFR53921.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
          Length = 882

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 184/345 (53%), Gaps = 38/345 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 29  LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 85

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M ++HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K  
Sbjct: 86  TM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSK-- 138

Query: 140 HFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD      T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+
Sbjct: 139 -FALDVVFNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNEL 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHI 256
            D  ++ + N +  L         PDF TG  I       + Y  G   G++ IR  S I
Sbjct: 198 CDASISYLRNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVKIR--SKI 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIEL 314
            K   D + + +TEIPY     ++++ I + V + +I     +R  D++      +++ L
Sbjct: 243 NKV--DNKTLAITEIPYGRTTTSVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHL 296

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+
Sbjct: 297 APGTSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLR 341


>gi|145286586|gb|ABP52100.1| topoisomerase IV subunit ParC [Streptococcus pyogenes]
          Length = 147

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 106/146 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IYD
Sbjct: 2   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYD 61

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  
Sbjct: 62  AMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAW 121

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           N+D + +EP VL A +PN+LVNG  G
Sbjct: 122 NFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|91201872|emb|CAJ74932.1| similar to DNA gyrase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 858

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 189/375 (50%), Gaps = 40/375 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++ +++   N +L YA  VIL RA+P L DGLKPV RRIL  M QM    + ++ K A I
Sbjct: 20  ALHVSEMYSNWFLEYASYVILERAVPALLDGLKPVQRRILHSMKQMD---DGRFNKAANI 76

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-GDPPAAERYTECRLQ 136
            G  M +YHPHG+AAI +AL  + Q    + LLIE QGN+G +  GD  AA RY E RL 
Sbjct: 77  IGHTM-QYHPHGDAAIGEALVNLGQ----KDLLIETQGNWGDISTGDSAAAPRYIEARLS 131

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  L       T +++ +YDG  +EPV+L  ++P +L  G  GIAVG+AT I  HN  
Sbjct: 132 KFA--LEVAFNNQTTEWQLSYDGRKKEPVLLPMKFPLLLAQGAEGIAVGLATRIMPHNFI 189

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-IVIRGVSH 255
           E+++  +  +   +++L         PDFPTG    G     N     RG  I +R    
Sbjct: 190 ELLEASIDTLRGKEVNL--------LPDFPTG----GMADFSNYNEGLRGGRINVRAKIE 237

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL-----VREKRIVDIADLRDESDRQGYRV 310
           I     +++ +V+  IPY    A +++ I +      ++ KR+VD       +  +   +
Sbjct: 238 IL----EKKTLVIRSIPYTTTTANVMDSIVKANENGKIKIKRVVD-------NTAKDVEI 286

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL    S DV ++ LY +T  +   S N   +   KP    +  ILK        ++ 
Sbjct: 287 VVELPPNVSPDVTIDALYAFTDCEISISPNACVIIDEKPRFLGVNEILKISAKHTVGLLK 346

Query: 371 RRTKYLLNKARDRAH 385
           R  +  L + R+  H
Sbjct: 347 RELEIKLGELREAWH 361


>gi|208972177|gb|ACI32672.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 120

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/120 (63%), Positives = 99/120 (82%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120


>gi|325855710|ref|ZP_08171901.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
 gi|325483763|gb|EGC86725.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
          Length = 992

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 179/335 (53%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 129 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 184

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 185 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 238

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  V 
Sbjct: 239 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVG 298

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  L         PDFPTG  I       + Y  G+   V++  + +EK   D +
Sbjct: 299 CLRGEEFHL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRARVEKL--DSK 343

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V EK  + I  + D +  +   + + L  G S+D  +
Sbjct: 344 TLVIREVPFTKTASSLQESITKAV-EKGKLKIRKVEDMTASE-VEIQLHLTPGTSSDKTI 401

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   +   KP   T+  +L+
Sbjct: 402 DALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLR 436


>gi|327314054|ref|YP_004329491.1| DNA gyrase/topoisomerase IV subunit A [Prevotella denticola F0289]
 gi|326944941|gb|AEA20826.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola F0289]
          Length = 992

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 179/335 (53%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 129 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 184

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 185 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 238

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  V 
Sbjct: 239 VFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVG 298

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  L         PDFPTG  I       + Y  G+   V++  + +EK   D +
Sbjct: 299 CLRGEEFHL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRARVEKL--DSK 343

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V EK  + I  + D +  +   + + L  G S+D  +
Sbjct: 344 TLVIREVPFTKTASSLQESITKAV-EKGKLKIRKVEDMTASE-VEIQLHLTPGTSSDKTI 401

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   +   KP   T+  +L+
Sbjct: 402 DALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLR 436


>gi|330996113|ref|ZP_08320006.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573884|gb|EGG55465.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 911

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 185/355 (52%), Gaps = 37/355 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DG KPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGFKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HNL E+ D  V
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNLNEICDAAV 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV-IRGVSHIEKTSGD 262
             +      L         PDF TG    G   +      GRG +V +R     + T  D
Sbjct: 214 NYLHGEPFQL--------YPDFLTG----GSIDVSKYNDGGRGGVVKVRA----KITKID 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + + EIPY      +++ I + + EK  + +  + D +  +   +++ L  G S+D 
Sbjct: 258 NKTLAIREIPYGKTTTTLIDSILKAI-EKGKIKVRKVEDNTAAE-VEILVHLTPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRR 372
            L+ LY +T  +   S N   ++  KP   T+  +LK  V       R+E+++R+
Sbjct: 316 ALDALYAFTDCEVSISPNCCVIDDKKPCFLTVSEVLKRSVDNTLGLLRKELLIRK 370


>gi|307566200|ref|ZP_07628651.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345093|gb|EFN90479.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
          Length = 905

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 184/347 (53%), Gaps = 32/347 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P++ DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L  
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LET 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL E+    ++
Sbjct: 155 VFNPKTTNWQQSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNEICSAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D  +         PDF TG  I       + Y  G+  G++ IR  + IEK   D
Sbjct: 215 YLKGKDFSI--------YPDFATGGSI-----DVSKYNNGQRGGTLKIR--AKIEKL--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ E+P+    +++ E I + + EK  + I  + D +  +   + + L    S+D 
Sbjct: 258 HKTLVIREVPFTKTASSIQESITKAI-EKGKIKIRKVEDMTASE-VEIHLHLSPNTSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            ++ LY +T  +   S N   +   KP   T+  +LK  V    E++
Sbjct: 316 TIDALYAFTDCEISISPNCCVIENNKPHFLTISDVLKHSVDHTRELL 362


>gi|33469560|gb|AAQ19805.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 149

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 106/146 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IY+
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYN 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  
Sbjct: 64  AMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           N+D + +EP VL A +PN+LVNG  G
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGSSG 149


>gi|294672800|ref|YP_003573416.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
 gi|294473600|gb|ADE82989.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
          Length = 890

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 188/361 (52%), Gaps = 41/361 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P L DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 36  QNWFLDYASYVILERAVPHLGDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 91

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  G   AA RY E RL K   F LD
Sbjct: 92  HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGSSAAAPRYIEARLSK---FALD 144

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 145 TVFNPKTTEWKMSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFCEICDAAI 204

Query: 204 AVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           + +      L         PDFPT G++ + +      Y  G+   VI+  + IEK   D
Sbjct: 205 SYLHQQPFAL--------YPDFPTSGSIDVSK------YNDGQRGGVIKVRAKIEKI--D 248

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE--LKRGASA 320
           ++ +V+ EIP+      + + I + + + +I      R   D     V I+  L  G S+
Sbjct: 249 QKTLVIREIPFSKTSETLQDSIVKAIEKGKI----KARKVEDLTAAEVEIQVHLAPGVSS 304

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA-----FREEVVVRRTKY 375
           D  ++ LY +T  +   S N   +   KP+  T+  +L+  V       R+E+ +R+ + 
Sbjct: 305 DKTIDALYAFTDCEVSISPNCCVIEDNKPQFLTVSDVLRHSVERTKDLIRQELEIRKGEL 364

Query: 376 L 376
           L
Sbjct: 365 L 365


>gi|259157367|gb|ACV96843.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 129

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 100/129 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPP 120

Query: 193 HNLGEVVDG 201
           HNL EV++G
Sbjct: 121 HNLTEVING 129


>gi|302340476|ref|YP_003805682.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
 gi|301637661|gb|ADK83088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
          Length = 643

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 177/336 (52%), Gaps = 30/336 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
              ++L YA  VI  RAIPD+ DGLKPV RRIL  + ++    + K+ K A I G  M K
Sbjct: 8   FNRNFLEYASYVIKDRAIPDIGDGLKPVQRRILHSLFEVD---DGKFHKVANIVGHCM-K 63

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+A+IY AL  +A     + L I+ QGNFG+ + GD  +A RY ECR+   A  +L
Sbjct: 64  YHPHGDASIYSALVVLAN----KDLFIDKQGNFGNPITGDEASAARYIECRILPFAKKVL 119

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                   ++  +YDG  +EPVV  ++ P +L+ G  GIAVGM+T I  HN  EV+   V
Sbjct: 120 --YSPQVTEYVDSYDGRNREPVVFPSKIPVLLIQGAEGIAVGMSTKILPHNFEEVLRAVV 177

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +      L         PDFP G ++       + Y  G G ++IR     +  + D 
Sbjct: 178 SELKGEPFQL--------FPDFPNGGLV-----DVSDYQDGLGKVLIRA----KLDTKDP 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           ++I++ EIP+     +++  I    R+ R V I+ + D +  +   + I+L RG     +
Sbjct: 221 KRIIIKEIPFGTTTESLIASIEAAARKGR-VKISQINDYTS-EAVEIEIKLARGVYTKEV 278

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           ++ L+ YT  +   SVN++ +    P + T+  +++
Sbjct: 279 VDSLFAYTDCEYSVSVNLLVIKDGLPTQMTVPEVIR 314


>gi|53711702|ref|YP_097694.1| DNA topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60679941|ref|YP_210085.1| DNA topoisomerase IV subunit A [Bacteroides fragilis NCTC 9343]
 gi|253564240|ref|ZP_04841697.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|52214567|dbj|BAD47160.1| topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60491375|emb|CAH06123.1| putative topoisomerase [Bacteroides fragilis NCTC 9343]
 gi|251948016|gb|EES88298.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|301161466|emb|CBW21006.1| putative topoisomerase [Bacteroides fragilis 638R]
          Length = 851

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 182/340 (53%), Gaps = 38/340 (11%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 58

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 111

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 112 VVFNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 171

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSG 261
           + + N +  L         PDF TG  I       + Y  G   G++ IR  S I K   
Sbjct: 172 SYLRNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVKIR--SKINKV-- 214

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKRGAS 319
           D + + +TEIPY     ++++ I + V + +I     +R  D++      +++ L  G S
Sbjct: 215 DNKTLAITEIPYGRTTTSVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAPGTS 270

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           +D  ++ LY +T  +   S N   ++  KP   T+  +L+
Sbjct: 271 SDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLR 310


>gi|49532769|dbj|BAD26622.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532771|dbj|BAD26623.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532773|dbj|BAD26624.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532785|dbj|BAD26630.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532799|dbj|BAD26637.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532801|dbj|BAD26638.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532803|dbj|BAD26639.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532811|dbj|BAD26643.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532813|dbj|BAD26644.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532815|dbj|BAD26645.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532817|dbj|BAD26646.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532819|dbj|BAD26647.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532821|dbj|BAD26648.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 100/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|255533353|ref|YP_003093725.1| DNA topoisomerase IV subunit A [Pedobacter heparinus DSM 2366]
 gi|255346337|gb|ACU05663.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter heparinus DSM 2366]
          Length = 977

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 180/345 (52%), Gaps = 32/345 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T + I    +N +L YA  VIL RA+P + DGLKPV RRI+  + +M    + ++ K A 
Sbjct: 16  TVIPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAAN 72

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRL 135
           + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  AA RY E RL
Sbjct: 73  VIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARL 127

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A+ ++     DT  ++ +YDG   EPV L  ++P +L  G  GIAVG+AT +  HN 
Sbjct: 128 SKFANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNF 185

Query: 196 GEVVDGCVAVIDN--PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            E++D  +  +    P+I           PDF TG +        +AY  G     IR  
Sbjct: 186 IELLDASIEALQGHRPNI----------LPDFFTGGM-----ADFSAYNEGMRGGRIRVR 230

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I  T  D++ +V+TEIPY     ++++ I  L    +        +++      +VI+
Sbjct: 231 AKI--TEKDKKTLVITEIPYSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAAHVEIVIQ 286

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           L  G S DV ++ LY +TS +   S N   +   KP+  ++  IL
Sbjct: 287 LAPGISPDVTIDALYAFTSCEVSISPNTCIIKDEKPQFLSVNDIL 331


>gi|146231451|gb|ABQ12873.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 147

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 105/146 (71%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IYD
Sbjct: 2   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYD 61

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+Q+W  R +L+E  GN GS+DGDPPA  RYTE RL + A +LL D+ K+TV F  
Sbjct: 62  AMVRMSQNWKNREILVEMHGNNGSMDGDPPAVMRYTEARLSEIAGYLLQDIEKNTVSFAW 121

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           N+D + +EP VL A +PN+LVNG  G
Sbjct: 122 NFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|82408805|gb|ABB73196.1| DNA gyrase [Listonella anguillarum]
 gi|82408807|gb|ABB73197.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 97/125 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 174 VLVNG 178
           +LVNG
Sbjct: 121 LLVNG 125


>gi|78771376|gb|ABB51163.1| GyrA [Escherichia coli]
          Length = 128

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 100/120 (83%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 68  RVVGDVIGKYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127


>gi|323344338|ref|ZP_08084563.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
 gi|323094465|gb|EFZ37041.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
          Length = 905

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 185/353 (52%), Gaps = 35/353 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+ + I  HNL ++ D  +
Sbjct: 154 VVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLTSKILPHNLNDICDAAI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +   D  +         PDFPTG  I       + Y  G+    ++  + IEK   D 
Sbjct: 214 SYLKGEDFCI--------YPDFPTGGSI-----DVSKYNDGQRGGTLKVRAKIEKL--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S+D  
Sbjct: 259 KTLVIKEIPFSKTTTTLIDSILKAIDKGKIK--ARKVDDNTAAEVEIQVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVR 371
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+++R
Sbjct: 317 IDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHSVDSTMGLLRKELLIR 369


>gi|171912371|ref|ZP_02927841.1| DNA topoisomerase IV subunit A [Verrucomicrobium spinosum DSM 4136]
          Length = 678

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 185/360 (51%), Gaps = 34/360 (9%)

Query: 15  GITSVSITDEMQ-NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           G     + DE+  + +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K
Sbjct: 16  GELHTKLVDELYGDWFLDYASYVILERAVPHINDGLKPVQRRILHSMRELE---DGRYNK 72

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
            A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E
Sbjct: 73  VANVVGNTM-KYHPHGDASIGDAMVQLGQ----KELLIDTQGNWGNILTGDGAAASRYIE 127

Query: 133 CRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K   F LD +    V ++  +YDG  +EPV L  ++P +L  G  GIAVG++  + 
Sbjct: 128 SRLTK---FALDVVFSPKVTEWANSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSCRVL 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA--YATGRGSIV 249
            HN  E+ D CVA +      L         PDFP G       GI +A  Y  G+    
Sbjct: 185 PHNFNELCDACVAALRGEPFQL--------LPDFPQG-------GIMDAADYNDGQRGGK 229

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE T   R  + +TEIP+     ++ E I     EK  + I  + D +  +   
Sbjct: 230 VRVRAKIE-TVPKRNMVRITEIPFGTTAGSVQESIVA-ANEKGKIKIQKVEDNT-AEFVE 286

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G   D  +  LY +T  +   SVN V +   KP   ++  ILK+   + ++++
Sbjct: 287 ILVHLPSGTDPDQAIQALYAFTDCEVSISVNAVVIQDDKPNFISVTEILKSNAEYAKQLL 346


>gi|11863189|gb|AAD43654.2| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 143

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 104/143 (72%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISSGYATDIP 143


>gi|49532791|dbj|BAD26633.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 100/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|194354444|gb|ACF54720.1| gyrase A [Mycobacterium tuberculosis]
          Length = 156

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 107/156 (68%), Gaps = 4/156 (2%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVG
Sbjct: 1   AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 60

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           MATNIP HNL E+ D     ++N D D    L A+M  ++GPDFPT  +I+G  G  +AY
Sbjct: 61  MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAY 120

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN 
Sbjct: 121 KTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNH 156


>gi|11761820|gb|AAG40200.1|AF303589_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761826|gb|AAG40203.1|AF303592_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761828|gb|AAG40204.1|AF303593_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761830|gb|AAG40205.1|AF303594_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761832|gb|AAG40206.1|AF303595_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761836|gb|AAG40208.1|AF303597_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761838|gb|AAG40209.1|AF303598_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761842|gb|AAG40211.1|AF303600_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761846|gb|AAG40213.1|AF303602_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761854|gb|AAG40217.1|AF303606_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761856|gb|AAG40218.1|AF303607_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761880|gb|AAG40230.1|AF303619_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761882|gb|AAG40231.1|AF303620_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
 gi|82654968|emb|CAJ19550.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654970|emb|CAJ19551.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654972|emb|CAJ19552.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654974|emb|CAJ19553.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654976|emb|CAJ19554.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654978|emb|CAJ19555.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654980|emb|CAJ19556.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654982|emb|CAJ19557.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654984|emb|CAJ19558.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654986|emb|CAJ19559.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654988|emb|CAJ19560.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654990|emb|CAJ19561.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654992|emb|CAJ19562.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654994|emb|CAJ19563.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654996|emb|CAJ19564.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654998|emb|CAJ19565.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655000|emb|CAJ19566.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655002|emb|CAJ19567.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655004|emb|CAJ19568.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655006|emb|CAJ19569.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655008|emb|CAJ19570.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655010|emb|CAJ19571.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655012|emb|CAJ19572.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655014|emb|CAJ19573.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 99/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|332180630|gb|AEE16318.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
          Length = 648

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 180/336 (53%), Gaps = 30/336 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
              ++L YA  VI  RAIPD+ DGLKPV RRIL  + ++    + K+ K A + G+ M K
Sbjct: 8   FDKNFLEYASYVIRDRAIPDIEDGLKPVQRRILHTLFEVD---DGKFNKVANVVGQCM-K 63

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+A+I  AL  +A     + L IE QGNFG++  GD  +A RY ECRL+  A  +L
Sbjct: 64  YHPHGDASIGGALVVLAN----KELFIEKQGNFGNLYTGDGASAARYIECRLKPLARDVL 119

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +       + P+YDG  +EPVV  A+ P  L+ G  GIAVGM+TNI +HN+ EV+   +
Sbjct: 120 YNPA--ITQYVPSYDGRNKEPVVFRAKLPIALILGAEGIAVGMSTNILSHNVREVIQAEI 177

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A +      L         PD  TG +I       + Y  G G I  R     +  + D 
Sbjct: 178 ACLKGEKFAL--------YPDCFTGGLI-----DVSDYQDGLGKITTRA----KLDTSDP 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           ++IVV E+P+  N   + E I +  +  ++  +A + D +  +   + I+L+RG  A+ +
Sbjct: 221 KRIVVRELPFGSNSERLTESIVKAAKNGKL-KVASVTDYTADK-VEIEIKLQRGVYAEDV 278

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           ++ LY +T  +   S N++ +    P+  T+  +++
Sbjct: 279 VSALYAFTECEQSISCNLLVIRDNMPQVMTVSDVIR 314


>gi|309807819|ref|ZP_07701751.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168921|gb|EFO71007.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 136

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 104/130 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K ARI GEVMGK+HPHG+++I
Sbjct: 1   MSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYKKSARIVGEVMGKFHPHGDSSI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+A+A MAQD+S R +L++G GNFGS+DGD PAA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTEARMSKIAMEMLRDINKDTIDW 120

Query: 154 RPNYDGSFQE 163
           + NYD +  E
Sbjct: 121 QRNYDDNENE 130


>gi|256819286|ref|YP_003140565.1| DNA topoisomerase IV subunit A [Capnocytophaga ochracea DSM 7271]
 gi|256580869|gb|ACU92004.1| DNA topoisomerase (ATP-hydrolyzing) [Capnocytophaga ochracea DSM
           7271]
          Length = 864

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 190/348 (54%), Gaps = 30/348 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G + + +T   Q+ +L YA  VIL RA+P + DG KPV RRI+  + ++    + +Y K
Sbjct: 12  QGDSIIKVTGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD---DGRYNK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
            A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E
Sbjct: 69  VANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNILTGDDAAAPRYIE 123

Query: 133 CRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K   F LD +    V +++ +YDG  +EP+ L  ++P +L  G  GIAVG++T I 
Sbjct: 124 ARLSK---FALDVVFSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEGIAVGLSTKIL 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E+++  +A + N   +L         PDFPT A I+  +G  +    GR  +  +
Sbjct: 181 PHNFIELIEASIAYLKNKPFEL--------YPDFPT-AGIMDVSGYNDGARGGRVRVRAK 231

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +S ++K++     + +TEIP+     ++++ I +   EK  + I  + D++      ++
Sbjct: 232 -ISQLDKST-----LCITEIPFTTTTTSLIDSILK-ANEKGKIKIKKV-DDNTAANVEIL 283

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 284 VHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331


>gi|15721889|dbj|BAB68394.1| DNA gyrase subunit A [Salmonella paratyphi]
          Length = 128

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 99/128 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|319900295|ref|YP_004160023.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
 gi|319415326|gb|ADV42437.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
          Length = 881

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 186/367 (50%), Gaps = 40/367 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 31  QNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 86

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 87  HPHGDASIADALVQLGQ----KDLLVDCQGNWGNILTGDSAAASRYIEARLSK---FALD 139

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 140 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 199

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +      L         PDF TG  I       + Y  G     +R  S IEK   D 
Sbjct: 200 RYLHKEGFKL--------YPDFQTGGSI-----DVSKYNDGERGGTVRVRSKIEKI--DN 244

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 245 KTLAIKEIPYGKTVASVCDSIVK-ASEKGKIKIRKVEDLTS-GSVEILVHLAAGVSSDKT 302

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYLLN 378
           ++ LY +T  +   S N   ++  KP   T+  +L+  V       R E+ +RR     N
Sbjct: 303 IDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTLDLLRLELEIRR-----N 357

Query: 379 KARDRAH 385
           + R+  H
Sbjct: 358 EIRESLH 364


>gi|82408809|gb|ABB73198.1| DNA gyrase [Listonella anguillarum]
 gi|82408811|gb|ABB73199.1| DNA gyrase [Listonella anguillarum]
 gi|82408813|gb|ABB73200.1| DNA gyrase [Listonella anguillarum]
 gi|82408815|gb|ABB73201.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 96/125 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 174 VLVNG 178
           +LVNG
Sbjct: 121 LLVNG 125


>gi|2921173|gb|AAC04690.1| topoisomerase IV subunit C [Mycoplasma hominis ATCC 23114]
          Length = 145

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 102/145 (70%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M  + ++ ++ + K ARI G+V+G+YHPHG+++IY+AL RMAQDW  
Sbjct: 1   DGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKS 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
              LIE  GN GS+D DP AA RYTE RL+K +  +L DL +  V   PN+D S  EP+V
Sbjct: 61  NFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATNIP 191
           L A +PN+LVNG  GIA G AT IP
Sbjct: 121 LPALFPNLLVNGAKGIAAGFATEIP 145


>gi|190888608|gb|ACE95929.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888610|gb|ACE95930.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888614|gb|ACE95932.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888616|gb|ACE95933.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888624|gb|ACE95937.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888626|gb|ACE95938.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888628|gb|ACE95939.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888632|gb|ACE95941.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888634|gb|ACE95942.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888636|gb|ACE95943.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888640|gb|ACE95945.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888648|gb|ACE95949.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888650|gb|ACE95950.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888652|gb|ACE95951.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 106/150 (70%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA  +I  RA+PD+RDGLKPV RRIL+GM  +G+ +NK Y K A   GEV+GK+HPHG++
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYTE RL    + +L+++ K+TV
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           +F  N+D S  EP +L +  PN+LVNG  G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|11761822|gb|AAG40201.1|AF303590_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761840|gb|AAG40210.1|AF303599_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761874|gb|AAG40227.1|AF303616_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761876|gb|AAG40228.1|AF303617_1 DNA gyrase subunit A [Raoultella terrigena]
 gi|11761878|gb|AAG40229.1|AF303618_1 DNA gyrase subunit A [Raoultella ornithinolytica]
 gi|11761884|gb|AAG40232.1|AF303621_1 DNA gyrase subunit A [Raoultella planticola]
          Length = 127

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|11761852|gb|AAG40216.1|AF303605_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761868|gb|AAG40224.1|AF303613_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761872|gb|AAG40226.1|AF303615_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|282878744|ref|ZP_06287512.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
 gi|281299135|gb|EFA91536.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
          Length = 911

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 184/358 (51%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T  ++ +YDG  +EP+ L A++P +L  G  GIAVG+++ I  HNL E+ +  +
Sbjct: 154 VVFNPKTTHWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNLNEICEAAI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +      L         PDFPTG  I         Y  G+    ++  + IEK   D 
Sbjct: 214 HYLRGEKFQL--------YPDFPTGGSI-----DVEKYNDGQRGGTLKVRAKIEKL--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + +V+ EIP+      +++ I   + + +I   A   D++      + + L  G S+D  
Sbjct: 259 KTLVIKEIPFSKTTTTLIDSILRAIDKGKIK--AKKVDDNTAAEVEIQVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY ++  +   S N   +   KP   T+  +L+  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFSDCEINVSPNCCVIEDDKPGFLTISDVLRHNVDSTMGLLRKELEIRKNELL 374


>gi|257456947|ref|ZP_05622128.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
 gi|257445656|gb|EEV20718.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
          Length = 642

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 180/338 (53%), Gaps = 34/338 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
              ++L YA  VI  RAIPD+ DGLKPV RRIL  + +M    + K+ K A + G  M K
Sbjct: 8   FNTNFLEYASYVIRDRAIPDVEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGYCM-K 63

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+ + A  +L
Sbjct: 64  YHPHGDASIGNALTVLAN----KSLFIDKQGNFGNLFTGDEASAPRYIECRITEFAKDIL 119

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                    + P+YDG  +EPVV  A+ P VL+ G  GIAVGM+T I  HN+ E+++   
Sbjct: 120 --FNPHITRYVPSYDGRNKEPVVFRAKLPVVLLIGAEGIAVGMSTKILPHNIREIIEAEK 177

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +      L         PDF TG +I       + Y  G+G +++R     +  + D 
Sbjct: 178 DCLSGKSFTL--------YPDFQTGGLI-----DVSEYQDGKGKVLVRA----KLDTSDD 220

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK--RGASAD 321
           ++IV+ E+P+     +++  I    +  + V I+++ D +  Q   V IELK  RG  A 
Sbjct: 221 KRIVIRELPFGSTTESLIASIESASKSGK-VKISEINDYTAEQ---VEIELKLPRGVYAS 276

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++ LY +T  +   S N++ +    P + ++  ++K
Sbjct: 277 DVVDALYAFTDCEQSISCNLLVIQDNLPVQTSVTEVIK 314


>gi|11761862|gb|AAG40221.1|AF303610_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|154493432|ref|ZP_02032752.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
 gi|154086642|gb|EDN85687.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 181/345 (52%), Gaps = 32/345 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S  ++   Q+ +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I
Sbjct: 55  SYHLSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANI 111

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQ 136
            G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL 
Sbjct: 112 VGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLS 166

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  
Sbjct: 167 KFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFN 224

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVS 254
           E++D  VA +   +  L         PDF TG  I       + Y  G   GS+ +R   
Sbjct: 225 ELLDASVAYLRGEEFTL--------YPDFQTGGYI-----DVSKYNDGERGGSVKVRA-- 269

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             + T  D + +V++EIPY    + ++E I +   +K  + I  + D + R    +++ L
Sbjct: 270 --KITKLDNKTLVISEIPYGKTTSTLIESILK-ANDKGKIKIKKVDDNTARN-VEILVHL 325

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             G S+D  ++ LY +T  +   S N   +   KP   T+  +LK
Sbjct: 326 APGVSSDKTIDALYAFTDCEISISPNCCVIMDNKPHFLTVSDVLK 370


>gi|261871070|gb|ACY02504.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 99/125 (79%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|224536481|ref|ZP_03677020.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521923|gb|EEF91028.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 892

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 185/358 (51%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLE---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   +  L         PDF TG  I       + Y  G     +R  + IEK   D 
Sbjct: 214 HYLHEEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVRIRAKIEKI--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A++ + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLAIKEIPYGKTVASVCDSIVK-ASEKGKIKIKKVEDLTS-GNVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  IL+  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDDQKPHFLTVSNILRKSVDNTLSLLRQELEIRKDEIL 374


>gi|218258786|ref|ZP_03475064.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225218|gb|EEC97868.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
          Length = 910

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 181/345 (52%), Gaps = 32/345 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S  ++   Q+ +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I
Sbjct: 55  SYHLSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANI 111

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQ 136
            G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL 
Sbjct: 112 VGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLS 166

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  
Sbjct: 167 KFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFN 224

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVS 254
           E++D  VA +   +  L         PDF TG  I       + Y  G   GS+ +R   
Sbjct: 225 ELLDASVAYLRGEEFTL--------YPDFQTGGYI-----DVSKYNDGERGGSVKVRA-- 269

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             + T  D + +V++EIPY    + ++E I +   +K  + I  + D + R    +++ L
Sbjct: 270 --KITKLDNKTLVISEIPYGKTTSTLIESILK-ANDKGKIKIKKVDDNTARN-VEILVHL 325

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             G S+D  ++ LY +T  +   S N   +   KP   T+  +LK
Sbjct: 326 APGVSSDKTIDALYAFTDCEISISPNCCVIMDNKPHFLTVSDVLK 370


>gi|284097497|ref|ZP_06385584.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830993|gb|EFC35016.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 154

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 111/152 (73%), Gaps = 1/152 (0%)

Query: 243 TGRGSIVIRGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           TGRG + +R  +H+E     DR  I+VTEIPYQVNKA +LEKIAELV+EKR+  I+D+RD
Sbjct: 3   TGRGLLTVRAKTHVETDEKRDRASIIVTEIPYQVNKAKVLEKIAELVQEKRLEGISDIRD 62

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELK+G    VILNQLY++T LQ+ F V M+AL   +PE  TL  IL AF
Sbjct: 63  ESDRDGIRVVIELKKGELPPVILNQLYKHTQLQNTFGVIMLALVHNRPEILTLKQILVAF 122

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           +  R EVV+RRT Y L KA +RAH++ GL IA
Sbjct: 123 LEHRREVVIRRTAYELRKAEERAHIVEGLNIA 154


>gi|15721887|dbj|BAB68393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 128

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/128 (59%), Positives = 99/128 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|11761848|gb|AAG40214.1|AF303603_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|213963463|ref|ZP_03391717.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
 gi|213953871|gb|EEB65199.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
          Length = 864

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 191/355 (53%), Gaps = 30/355 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S     +G + + IT   Q+ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 5   TSQNTASQGDSIIKITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 63  -DGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNILTGDDA 116

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RY E RL K   F LD +    V +++ +YDG  +EP+ L  ++P +L  G  GIAV
Sbjct: 117 AAPRYIEARLSK---FALDVVFSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEGIAV 173

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T I  HN  E+++  +A +     +L         PDFPT A I+  +G  +    G
Sbjct: 174 GLSTKILPHNFIELIEASIAYLKGKSFEL--------YPDFPT-AGIMDVSGYNDGARGG 224

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           R  +  + +S ++K++     + +TEIP+     ++++ I +   EK  + I  + D++ 
Sbjct: 225 RVRVRAK-ISQLDKST-----LCITEIPFTTTTTSLIDSILK-ANEKGKIKIKKV-DDNT 276

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
                +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 277 AANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331


>gi|11761850|gb|AAG40215.1|AF303604_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|189464414|ref|ZP_03013199.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
 gi|189438204|gb|EDV07189.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
          Length = 892

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/358 (33%), Positives = 184/358 (51%), Gaps = 35/358 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRME---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +   +  L         PDF TG  I       + Y  G     +R  + IEK   D 
Sbjct: 214 RYLHEEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVRVRAKIEKI--DN 258

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + + EIPY    A + + I +   EK  + I  + D +      +++ L  G S+D  
Sbjct: 259 KTLAIKEIPYGKTVANVCDSIVK-ASEKGKIKIKKVEDLTS-GNVEILVHLAPGVSSDKT 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFREEVVVRRTKYL 376
           ++ LY +T  +   S N   ++  KP   T+  +L+  V       R+E+ +R+ + L
Sbjct: 317 IDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTLSLLRQELEIRKDEIL 374


>gi|190888606|gb|ACE95928.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888612|gb|ACE95931.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888618|gb|ACE95934.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888620|gb|ACE95935.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888622|gb|ACE95936.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888630|gb|ACE95940.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888638|gb|ACE95944.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888642|gb|ACE95946.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888644|gb|ACE95947.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888646|gb|ACE95948.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888654|gb|ACE95952.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 105/150 (70%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA  +I  RA+PD+RDGLKPV RRIL+GM  +G+ +NK Y K A   GEV+GK+HPHG+ 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDL 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYTE RL    + +L+++ K+TV
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           +F  N+D S  EP +L +  PN+LVNG  G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|11761824|gb|AAG40202.1|AF303591_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761844|gb|AAG40212.1|AF303601_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761858|gb|AAG40219.1|AF303608_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|60416654|emb|CAI43396.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416656|emb|CAI43397.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416660|emb|CAI43399.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416662|emb|CAI43400.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416664|emb|CAI43401.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416666|emb|CAI43402.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416668|emb|CAI43403.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416670|emb|CAI43404.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416672|emb|CAI43405.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416674|emb|CAI43406.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416676|emb|CAI43407.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416678|emb|CAI43408.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416680|emb|CAI43409.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416684|emb|CAI43411.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|261871066|gb|ACY02502.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 98/125 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|261871062|gb|ACY02500.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/125 (62%), Positives = 98/125 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|47420000|gb|AAT27352.1| DNA gyrase A [Campylobacter fetus]
          Length = 248

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/273 (39%), Positives = 164/273 (60%), Gaps = 28/273 (10%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT 
Sbjct: 1   KRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSS 493
                         LSE+Q+ AIL++RL++LTGL R+ +  EL  + +E+ E LD IL S
Sbjct: 107 ------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI-LELIEKLDAILKS 153

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP 
Sbjct: 154 ETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPS 213

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
             Y  Q+RGGKG+  V   D+DF+   F   +H
Sbjct: 214 KSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSH 246


>gi|323575321|dbj|BAJ78200.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575323|dbj|BAJ78201.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575325|dbj|BAJ78202.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575327|dbj|BAJ78203.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575329|dbj|BAJ78204.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575331|dbj|BAJ78205.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575333|dbj|BAJ78206.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575335|dbj|BAJ78207.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575337|dbj|BAJ78208.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575339|dbj|BAJ78209.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575341|dbj|BAJ78210.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575345|dbj|BAJ78212.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575347|dbj|BAJ78213.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575349|dbj|BAJ78214.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575351|dbj|BAJ78215.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 96/132 (72%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 178 GGGGIAVGMATN 189
           G  GIAVGMATN
Sbjct: 121 GSSGIAVGMATN 132


>gi|255692614|ref|ZP_05416289.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
 gi|260621674|gb|EEX44545.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
          Length = 881

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 181/344 (52%), Gaps = 34/344 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK- 138

Query: 139 AHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E
Sbjct: 139 --FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D  ++ +   +  L         PDF TG  I       N    G G++ +R     +
Sbjct: 197 LCDASISYLRGEEFQL--------YPDFQTGGSI--DVAKYNDGERG-GAVKVRA----K 241

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELK 315
            T  D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L 
Sbjct: 242 ITKIDNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLA 297

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 298 PGTSSDRTIDALYAFTDCEVSISPNCCVIDDSKPHFLTISKVLK 341


>gi|89891249|ref|ZP_01202756.1| topoisomerase IV, subunit A [Flavobacteria bacterium BBFL7]
 gi|89516561|gb|EAS19221.1| topoisomerase IV,  subunit  A [Flavobacteria bacterium BBFL7]
          Length = 894

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 177/346 (51%), Gaps = 30/346 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           I+  E +E   +   IT   +  +L YA  VIL RA+P + DG KPV RRI+  M  +  
Sbjct: 11  INDGEIQEPTESITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRRIMQSMKDLD- 69

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDP 124
             + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + +LI+ QGN+G++  GDP
Sbjct: 70  --DGRYNKVANIVGHAM-QYHPHGDASISDAMVQIGQ----KDMLIDMQGNWGNIFTGDP 122

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY E RL K A  +L        +++ +YDG  +EPV L  ++P +L  G  GIAV
Sbjct: 123 AAASRYIEARLSKFALEIL--FNPKITEWQSSYDGRRKEPVNLPVKFPLLLAQGAEGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T +  HN  E++D  +  +      +         PDFPTG    G   + N     
Sbjct: 181 GLSTKVLPHNFIELIDASIKHLQGKRFTI--------YPDFPTG----GEIDVTNYNDGL 228

Query: 245 RGSIV-IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RG  V +R   H    + D+  I++TEIPY  N +++++ I  L   ++        +++
Sbjct: 229 RGGKVRVRAKMH----APDKNTIIITEIPYSTNTSSLIDSI--LKANEKGKIKIKKIEDN 282

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
                 ++I L  G S D  ++ LY +T+ +S  S     +   KP
Sbjct: 283 TAADVEIMIHLHSGISPDKTMDALYAFTNCESSISPLGCVIEDNKP 328


>gi|293370569|ref|ZP_06617121.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298481614|ref|ZP_06999805.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|299147250|ref|ZP_07040315.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
 gi|292634303|gb|EFF52840.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298272155|gb|EFI13725.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|298514528|gb|EFI38412.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
          Length = 881

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 179/343 (52%), Gaps = 34/343 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 29  LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 85

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 86  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK-- 138

Query: 140 HFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+
Sbjct: 139 -FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNEL 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D  ++ +   +  L         PDF TG  I         Y  G     ++  + I K
Sbjct: 198 CDASISYLRGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKINK 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKR 316
              D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L  
Sbjct: 245 I--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAP 298

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 299 GTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPHFLTVSKVLK 341


>gi|297242375|gb|ADI24860.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/121 (63%), Positives = 93/121 (76%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPTLLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|49532809|dbj|BAD26642.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 72/132 (54%), Positives = 99/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++Y A+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYYAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|312130258|ref|YP_003997598.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
 gi|311906804|gb|ADQ17245.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
          Length = 868

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 179/342 (52%), Gaps = 32/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D  +  +L YA  VIL RA+P + DGLKPV RR L  + +M    + ++ K A + G 
Sbjct: 15  LDDMFEKYFLEYASYVILERAVPAIEDGLKPVQRRFLHALKEMD---DGRFNKVANVIGS 71

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DA+  + Q    + LL++ QGN+G V  GD  AA RY E RL K  
Sbjct: 72  TM-QYHPHGDASIGDAIVNIGQ----KELLLDIQGNWGDVRTGDSAAAPRYIEVRLSKFG 126

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H +L    +DT +++ +YDG  +EPV L A++P VL  G  GIAVG++T I  HN  E+ 
Sbjct: 127 HEVL--FNEDTTEWQMSYDGRKREPVTLPAKFPLVLEMGAEGIAVGLSTKILPHNFIELC 184

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV-IRG-VSHIE 257
           +  +  + N           +  PDF TG +I     + N     RG  V +R  +S + 
Sbjct: 185 EASIKYLKNE--------PFVLYPDFLTGGLI----DVSNYNDGARGGKVKMRAKISEV- 231

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               D++ + +TEIP+     +++E I +     +I  I  + D + +    ++I L   
Sbjct: 232 ----DKKTLKITEIPFSTTTGSLIESIIKANDSGKI-KIKKVEDNTAKN-VEIIIHLAPN 285

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            S D+ ++ LY +T+ +   S N V +   KP    +  ILK
Sbjct: 286 TSTDITIDALYAFTNCEVSVSPNAVVIVDQKPHFLGVSDILK 327


>gi|153808895|ref|ZP_01961563.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
 gi|149128228|gb|EDM19447.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
          Length = 881

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 179/344 (52%), Gaps = 34/344 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK- 138

Query: 139 AHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E
Sbjct: 139 --FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D  +  +   +  L         PDF TG  I         Y  G     ++  + I 
Sbjct: 197 LCDASINYLRGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKIN 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELK 315
           K   D + + +TEIPY    +++++ I + V + +I     +R  D++      +++ L 
Sbjct: 244 KL--DNKTLAITEIPYGKTTSSVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLA 297

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 298 PGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLK 341


>gi|315224728|ref|ZP_07866551.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
 gi|314945356|gb|EFS97382.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
          Length = 864

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 189/348 (54%), Gaps = 30/348 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G + + +T   Q+ +L YA  VIL RA+P + DG KPV RRI+  + ++    + +Y K
Sbjct: 12  QGDSIIKVTGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD---DGRYNK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
            A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E
Sbjct: 69  VANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNILTGDDAAAPRYIE 123

Query: 133 CRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K   F LD +    V +++ +YDG  +EP+ L  ++P +L  G  GIAVG++T I 
Sbjct: 124 ARLSK---FALDVVFSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGTEGIAVGLSTKIL 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E+++  +A +     +L         PDFPT A I+  +G  +    GR  +  +
Sbjct: 181 PHNFIELIEASIAYLKKKPFEL--------YPDFPT-AGIMDVSGYNDGARGGRVRVRAK 231

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +S ++K++     + +TEIP+     ++++ I +   EK  + I  + D++      ++
Sbjct: 232 -ISQLDKST-----LCITEIPFTTTTTSLIDSILK-ANEKGKIKIKKV-DDNTAANVEIL 283

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 284 VHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331


>gi|284192203|gb|ADB82821.1| DNA gyrase subunit A [Coxiella burnetii]
          Length = 121

 Score =  167 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 91/121 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK   K ARI G+V+GKYHPHG+ A+Y  + RMAQ +SLR LLI+GQGNFGSVDGD PA
Sbjct: 1   WNKPNKKSARIVGDVIGKYHPHGDVAVYGTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + AH L+ DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGM
Sbjct: 61  AMRYTEIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGM 120

Query: 187 A 187
           A
Sbjct: 121 A 121


>gi|260172283|ref|ZP_05758695.1| DNA topoisomerase IV subunit A [Bacteroides sp. D2]
 gi|315920589|ref|ZP_07916829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694464|gb|EFS31299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 881

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 179/343 (52%), Gaps = 34/343 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 29  LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 85

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 86  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK-- 138

Query: 140 HFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+
Sbjct: 139 -FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNEL 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D  ++ +   +  L         PDF TG  I         Y  G     ++  + I K
Sbjct: 198 CDASISYLRGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKINK 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKR 316
              D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L  
Sbjct: 245 I--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAP 298

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 299 GTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPHFLTVSKVLK 341


>gi|237715450|ref|ZP_04545931.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262405292|ref|ZP_06081842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643163|ref|ZP_06720993.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294810552|ref|ZP_06769204.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229444759|gb|EEO50550.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262356167|gb|EEZ05257.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641508|gb|EFF59696.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294442213|gb|EFG11028.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 881

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 179/344 (52%), Gaps = 34/344 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK- 138

Query: 139 AHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E
Sbjct: 139 --FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D  ++ +   +  L         PDF TG  I         Y  G     ++  + I 
Sbjct: 197 LCDASISYLHGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKIN 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELK 315
           K   D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L 
Sbjct: 244 KI--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLA 297

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+
Sbjct: 298 PGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLR 341


>gi|295086380|emb|CBK67903.1| DNA topoisomerase IV subunit A [Bacteroides xylanisolvens XB1A]
          Length = 881

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 179/344 (52%), Gaps = 34/344 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK- 138

Query: 139 AHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E
Sbjct: 139 --FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D  ++ +   +  L         PDF TG  I         Y  G     ++  + I 
Sbjct: 197 LCDASISYLHGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKIN 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELK 315
           K   D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L 
Sbjct: 244 KI--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLA 297

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+
Sbjct: 298 PGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLR 341


>gi|297242311|gb|ADI24828.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242317|gb|ADI24831.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242325|gb|ADI24835.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242329|gb|ADI24837.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242351|gb|ADI24848.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242353|gb|ADI24849.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242357|gb|ADI24851.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242359|gb|ADI24852.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242361|gb|ADI24853.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242363|gb|ADI24854.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242365|gb|ADI24855.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242367|gb|ADI24856.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242373|gb|ADI24859.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242377|gb|ADI24861.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242379|gb|ADI24862.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242381|gb|ADI24863.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/121 (63%), Positives = 93/121 (76%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|253571133|ref|ZP_04848540.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
 gi|251839086|gb|EES67170.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
          Length = 881

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 178/343 (51%), Gaps = 32/343 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKF 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+
Sbjct: 140 ALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNEL 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D  ++ +      L         PDF TG  I         Y  G     ++  + I K
Sbjct: 198 CDASISYLRGESFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKINK 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKR 316
              D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L  
Sbjct: 245 L--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAP 298

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 299 GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLK 341


>gi|237719816|ref|ZP_04550297.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
 gi|229451085|gb|EEO56876.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
          Length = 881

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 178/343 (51%), Gaps = 34/343 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 29  LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 85

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 86  TM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK-- 138

Query: 140 HFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+
Sbjct: 139 -FALDVVFNPKTTKWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNEL 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D  ++ +   +  L         PDF TG  I         Y  G     ++  + I K
Sbjct: 198 CDASISYLRGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKINK 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKR 316
              D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L  
Sbjct: 245 I--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAP 298

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 299 GTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPHFLTVSKVLK 341


>gi|298386698|ref|ZP_06996253.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
 gi|298260372|gb|EFI03241.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
          Length = 881

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 178/343 (51%), Gaps = 32/343 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKF 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+
Sbjct: 140 ALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNEL 197

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            D  ++ +      L         PDF TG  I         Y  G     ++  + I K
Sbjct: 198 CDASISYLRGESFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKINK 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKR 316
              D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L  
Sbjct: 245 L--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAP 298

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 299 GTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLK 341


>gi|313159342|gb|EFR58706.1| DNA gyrase/topoisomerase IV, A subunit [Alistipes sp. HGB5]
          Length = 1048

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 217/429 (50%), Gaps = 50/429 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   +N +L YA  VIL RA+P + DGLKPV RRIL  M  +    + +Y K A I G+
Sbjct: 56  LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHAMKVVD---DGRYNKVANIVGQ 112

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 113 TM-QYHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFA 167

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           + ++    K T ++   YDG  +EPV L  ++P +L  G  GIAVG+A+ I  HN  E++
Sbjct: 168 NEVV--FNKKTTEWMLTYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELI 225

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGA---VILGRTGIKNAYATGRGSIVIRG-VSH 255
           + C+A +   +  L         PDFPTG    V     G++       G++ +R  +S 
Sbjct: 226 NACIAHLQGREFQL--------YPDFPTGGMADVSRYNDGLRG------GAVKVRAKISK 271

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVIEL 314
           I     D+  + +TEIPY     ++ + I +   +K  + I  + D + DR    +VI++
Sbjct: 272 I-----DKRTLAITEIPYTTTTESIKDSIIK-ANDKGKIKIKKVDDNTADR--VEIVIQV 323

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
               S+D  ++ LY +T  +   + N   +   KP    +  IL+      + ++ R  +
Sbjct: 324 SPDESSDKTIDALYAFTDCEVSIAPNACLIWEDKPHFLGVSEILRRSAEHTKWLLGRELE 383

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR----------RELMQRSWNA 424
             L +  +  H      I + N  ++ ++I  S + E A           ++L++R    
Sbjct: 384 IRLGELNEAWHAASLERIFIEN--KLYQLIEGSKSREEAYAAVDKGLEPFKKLLRREVTL 441

Query: 425 SDIKDLIDL 433
           SD++ L +L
Sbjct: 442 SDVQRLTEL 450


>gi|11761834|gb|AAG40207.1|AF303596_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761860|gb|AAG40220.1|AF303609_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761864|gb|AAG40222.1|AF303611_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|29348988|ref|NP_812491.1| DNA topoisomerase IV subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340895|gb|AAO78685.1| topoisomerase IV subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 850

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 176/338 (52%), Gaps = 34/338 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 58

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 111

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 112 IVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 171

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           + +      L         PDF TG  I         Y  G     ++  + I K   D 
Sbjct: 172 SYLHGESFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKINKL--DN 216

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELKRGASAD 321
           + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L  G S+D
Sbjct: 217 KTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLAPGTSSD 272

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             ++ LY +T  +   S N   ++  KP   T+  +LK
Sbjct: 273 KTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLK 310


>gi|167752022|ref|ZP_02424149.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
 gi|167660263|gb|EDS04393.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
          Length = 918

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 194/378 (51%), Gaps = 34/378 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE G+    +T   +N +L YA  VIL RA+P ++DGLKPV RRIL  M  +    + +Y
Sbjct: 47  EEGGVRK--LTGMYRNWFLDYASYVILERAVPHVQDGLKPVQRRILHAMKAVD---DGRY 101

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERY 130
            K A I G+ M +YHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY
Sbjct: 102 NKVANIVGQTM-QYHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRY 156

Query: 131 TECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            E RL K   F LD    K T ++  +YDG  +EPV L  ++P +L  G  GIAVG+A+ 
Sbjct: 157 IEARLSK---FALDVVFNKKTTEWMRSYDGRNEEPVTLPVKFPLLLAQGADGIAVGLASK 213

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSI 248
           I  HN  E+++  +A +   D  L         PDFPT  +I + R      Y  G    
Sbjct: 214 ILPHNFIELINAAIAHLQGRDFVL--------YPDFPTAGMIDVSR------YNDGLRGG 259

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            ++  + I K   D+  + +TEIPY     ++ + I +   EK  + I  + D++  +  
Sbjct: 260 TVKVRARISKI--DKRTLAITEIPYTTTTESIKDSIVK-ANEKGKIKIRKV-DDNTAEKV 315

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            +++++    S+D  ++ LY +T  +   + N   +   KP    +  IL+       E+
Sbjct: 316 EIIVQVAPDESSDKTIDALYAFTDCEVSIAPNACVICDDKPHFLGVSEILRRSAEHTREL 375

Query: 369 VVRRTKYLLNKARDRAHV 386
           +    +  LN+  +  H 
Sbjct: 376 LKMELEIRLNELNEAWHA 393


>gi|261871072|gb|ACY02505.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 98/125 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|150009781|ref|YP_001304524.1| DNA topoisomerase IV subunit A [Parabacteroides distasonis ATCC
           8503]
 gi|149938205|gb|ABR44902.1| topoisomerase IV subunit A [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 37/365 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A
Sbjct: 52  VTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYNKVA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECR 134
            I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E R
Sbjct: 109 NIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEAR 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN
Sbjct: 164 LSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG 252
             E++D  +A +   +  L         PDF TG    G   I   Y  G   GS+ +R 
Sbjct: 222 FNELLDASIAYLRGEEFAL--------YPDFQTG----GSIDIA-KYNDGERGGSVKVR- 267

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K   D + +V++EIPY    + ++E I +   +K  + I  + D++  +   +++
Sbjct: 268 -AKIGKL--DNKTLVISEIPYGKTTSTVIESILK-ANDKGKIKIKKV-DDNTAKDVEILV 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREE 367
            L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L     +     REE
Sbjct: 323 HLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLHHSTDRTLELLREE 382

Query: 368 VVVRR 372
           + +++
Sbjct: 383 LKIQK 387


>gi|15278103|gb|AAK94038.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 128

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 92/127 (72%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   D
Sbjct: 2   GFRPDRSHAKSARSVAEAMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIA
Sbjct: 62  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 121

Query: 184 VGMATNI 190
           VGMATNI
Sbjct: 122 VGMATNI 128


>gi|160885388|ref|ZP_02066391.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
 gi|156109010|gb|EDO10755.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
          Length = 881

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 179/344 (52%), Gaps = 34/344 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G
Sbjct: 28  QLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVG 84

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 85  HTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK- 138

Query: 139 AHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E
Sbjct: 139 --FALDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D  ++ +   +  L         PDF TG  I         Y  G     ++  + I 
Sbjct: 197 LCDASISYLRGEEFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKIN 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR--DESDRQGYRVVIELK 315
           K   D + + +TEIPY    + +++ I + V + +I     +R  D++      +++ L 
Sbjct: 244 KI--DNKTLAITEIPYGKTTSTVIDSILKAVDKGKI----KIRKVDDNTAANVEILVHLA 297

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+
Sbjct: 298 PGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLR 341


>gi|60678992|gb|AAX33777.1| DNA gyrase subunit A [Mycoplasma synoviae]
          Length = 135

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 105/135 (77%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ M ++G+    +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++
Sbjct: 1   HRRILYDMSELGMTPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVD 60

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           G GNFGS+DGD PA+ RYTE R+ K +  LL+ + K+TVDF  NYD + +EP VL +R+P
Sbjct: 61  GHGNFGSIDGDEPASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFP 120

Query: 173 NVLVNGGGGIAVGMA 187
           N+LV+G  GIAVGMA
Sbjct: 121 NLLVSGSIGIAVGMA 135


>gi|281356735|ref|ZP_06243226.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316862|gb|EFB00885.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
          Length = 877

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 181/364 (49%), Gaps = 33/364 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  ++L YA  VI  RAIPD+ DGLKPV RR+L+ + Q+   ++ +  K A + G  M  
Sbjct: 52  MDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGNTM-H 107

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHGNA+I DAL  +A     +   I  QGNFG++  G P AA RY EC L    H +L
Sbjct: 108 YHPHGNASIEDALVVLAN----KEYYITRQGNFGNILTGSPAAAGRYIECSLSPLGHEVL 163

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                D  +F   YDG   EPV L A+ P++L+ G  GIAVGMAT I  HN  E+++  +
Sbjct: 164 --FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELLEAEI 221

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           AV+   + +L         PDF  G ++  R      Y  G G I +R  + IE    D 
Sbjct: 222 AVLRGEEFEL--------YPDFQQGGLMDVRE-----YNDGNGKITLR--AKIEIVGRD- 265

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD-ESDRQGYRVVIELKRGASADV 322
             +++ EIP   +   ++  I E   EK  + I+ + D  +D+   +VV    RG   + 
Sbjct: 266 --LIIREIPATTSTETLVASI-EKAAEKNKIKISSVNDYTTDKVEIKVVP--TRGYDPEK 320

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            +  LY YT      SVNM  +   +P + ++  +L+       E + R  +  L K  D
Sbjct: 321 TMQGLYMYTDCSVSISVNMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQED 380

Query: 383 RAHV 386
             H 
Sbjct: 381 LFHA 384


>gi|298374175|ref|ZP_06984133.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
 gi|298268543|gb|EFI10198.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
          Length = 911

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 37/365 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A
Sbjct: 52  VTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYNKVA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECR 134
            I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E R
Sbjct: 109 NIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEAR 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN
Sbjct: 164 LSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG 252
             E++D  +A +   +  L         PDF TG    G   I   Y  G   GS+ +R 
Sbjct: 222 FNELLDASIAYLRGEEFAL--------YPDFQTG----GSIDIA-KYNDGERGGSVKVR- 267

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K   D + +V++EIPY    + ++E I +   +K  + I  + D++  +   +++
Sbjct: 268 -AKIGKL--DNKTLVISEIPYGKTTSTVIESILK-ANDKGKIKIKKV-DDNTAKDVEILV 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREE 367
            L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L     +     REE
Sbjct: 323 HLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELLREE 382

Query: 368 VVVRR 372
           + +++
Sbjct: 383 LKIQK 387


>gi|297242355|gb|ADI24850.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242369|gb|ADI24857.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242371|gb|ADI24858.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/121 (63%), Positives = 92/121 (76%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|262382912|ref|ZP_06076049.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
 gi|262295790|gb|EEY83721.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
          Length = 911

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 37/365 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A
Sbjct: 52  VTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYNKVA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECR 134
            I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E R
Sbjct: 109 NIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEAR 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN
Sbjct: 164 LSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG 252
             E++D  +A +   +  L         PDF TG    G   I   Y  G   GS+ +R 
Sbjct: 222 FNELLDASIAYLRGEEFAL--------YPDFQTG----GSIDIA-KYNDGERGGSVKVR- 267

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K   D + +V++EIPY    + ++E I +   +K  + I  + D++  +   +++
Sbjct: 268 -AKIGKL--DNKTLVISEIPYGKTTSTVIESILK-ANDKGKIKIKKV-DDNTAKDVEILV 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREE 367
            L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L     +     REE
Sbjct: 323 HLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELLREE 382

Query: 368 VVVRR 372
           + +++
Sbjct: 383 LKIQK 387


>gi|11761870|gb|AAG40225.1|AF303614_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|255012928|ref|ZP_05285054.1| DNA topoisomerase IV subunit A [Bacteroides sp. 2_1_7]
          Length = 911

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 37/365 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A
Sbjct: 52  VTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYNKVA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECR 134
            I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E R
Sbjct: 109 NIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEAR 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN
Sbjct: 164 LSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG 252
             E++D  +A +   +  L         PDF TG    G   I   Y  G   GS+ +R 
Sbjct: 222 FNELLDASIAYLRGEEFAL--------YPDFQTG----GSIDIA-KYNDGERGGSVKVR- 267

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K   D + +V++EIPY    + ++E I +   +K  + I  + D++  +   +++
Sbjct: 268 -AKIGKL--DNKTLVISEIPYGKTTSTVIESILK-ANDKGKIKIKKV-DDNTAKDVEILV 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREE 367
            L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L     +     REE
Sbjct: 323 HLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELLREE 382

Query: 368 VVVRR 372
           + +++
Sbjct: 383 LKIQK 387


>gi|301312343|ref|ZP_07218260.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
 gi|300829765|gb|EFK60418.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
          Length = 911

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 37/365 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A
Sbjct: 52  VTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYNKVA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECR 134
            I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E R
Sbjct: 109 NIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEAR 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN
Sbjct: 164 LSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG 252
             E++D  +A +   +  L         PDF TG    G   I   Y  G   GS+ +R 
Sbjct: 222 FNELLDASIAYLRGEEFAL--------YPDFQTG----GSIDIA-KYNDGERGGSVKVR- 267

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K   D + +V++EIPY    + ++E I +   +K  + I  + D++  +   +++
Sbjct: 268 -AKIGKL--DNKTLVISEIPYGKTTSTVIESILK-ANDKGKIKIKKV-DDNTAKDVEILV 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREE 367
            L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L     +     REE
Sbjct: 323 HLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELLREE 382

Query: 368 VVVRR 372
           + +++
Sbjct: 383 LKIQK 387


>gi|256838469|ref|ZP_05543979.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
 gi|256739388|gb|EEU52712.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
          Length = 911

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 37/365 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A
Sbjct: 52  VTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYNKVA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECR 134
            I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E R
Sbjct: 109 NIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEAR 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN
Sbjct: 164 LSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG 252
             E++D  +A +   +  L         PDF TG    G   I   Y  G   GS+ +R 
Sbjct: 222 FNELLDASIAYLRGEEFAL--------YPDFQTG----GSIDIA-KYNDGERGGSVKVR- 267

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K   D + +V++EIPY    + ++E I +   +K  + I  + D++  +   +++
Sbjct: 268 -AKIGKL--DNKTLVISEIPYGKTTSTVIESILK-ANDKGKIKIKKV-DDNTAKDVEILV 322

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-----KAFVAFREE 367
            L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L     +     REE
Sbjct: 323 HLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELLREE 382

Query: 368 VVVRR 372
           + +++
Sbjct: 383 LKIQK 387


>gi|313600326|gb|ADR71659.1| DNA gyrase subunit A [Salmonella sp. ES-B43]
          Length = 128

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 98/128 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|167946762|ref|ZP_02533836.1| DNA gyrase subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  + IE   S +R++I+V E+PYQVNKA +LEKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 1   MRARTEIESLDSSNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGM 60

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG  A+V+LN L++ T++QS+F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 61  RMVIELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVDGQPRLLNLKQMLEYFIRHRREV 120

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           V RRT + L KARDRAHVL GLA+A+AN+DEV+
Sbjct: 121 VTRRTLFELRKARDRAHVLEGLAVALANIDEVI 153


>gi|261871068|gb|ACY02503.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 97/125 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|33338050|gb|AAQ13647.1|AF173980_1 topoisomerase IV [Pasteurella multocida]
          Length = 144

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/144 (54%), Positives = 106/144 (73%), Gaps = 3/144 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S 
Sbjct: 1   DGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY 60

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +LG+ TVD++PN+DG+ +EP
Sbjct: 61  RYPLVDGQGNWGAPD-DPKSFAAMRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEP 119

Query: 165 VVLCARYPNVLVNGGGGIAVGMAT 188
             L AR P++L+NG  GIAVGMAT
Sbjct: 120 QYLPARLPHILLNGTTGIAVGMAT 143


>gi|297242309|gb|ADI24827.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242319|gb|ADI24832.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242327|gb|ADI24836.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242331|gb|ADI24838.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242337|gb|ADI24841.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242339|gb|ADI24842.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242341|gb|ADI24843.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242343|gb|ADI24844.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/121 (62%), Positives = 92/121 (76%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+ +GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDAIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|2191121|gb|AAB61011.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 132

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/132 (60%), Positives = 101/132 (76%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +++IY+A+ RMAQD+S R  L+ GQGNFGS+DGD  AA RYTE RL K    LL D+ KD
Sbjct: 1   DSSIYEAMVRMAQDFSYRYPLVNGQGNFGSMDGDGAAAMRYTEARLTKITLELLRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+DG +++  NP
Sbjct: 61  TIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLSLSKNP 120

Query: 210 DIDLDALMEIIR 221
           DI ++ LME I+
Sbjct: 121 DITINELMEDIQ 132


>gi|297242307|gb|ADI24826.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242333|gb|ADI24839.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/121 (62%), Positives = 93/121 (76%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 1   HKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 60

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 61  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 120

Query: 188 T 188
           T
Sbjct: 121 T 121


>gi|255349048|ref|ZP_05381055.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70]
 gi|255503586|ref|ZP_05381976.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70s]
 gi|255507266|ref|ZP_05382905.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D(s)2923]
          Length = 490

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 178/342 (52%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP VL A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDVLAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP+G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------FPDFPSGG-----TMDASDYQAGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|60416658|emb|CAI43398.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416682|emb|CAI43410.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|3411074|gb|AAC31135.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411076|gb|AAC31136.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411078|gb|AAC31137.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 98/122 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QK 137
            K
Sbjct: 129 TK 130


>gi|254444676|ref|ZP_05058152.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258984|gb|EDY83292.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 679

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 175/346 (50%), Gaps = 28/346 (8%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++ ++ EE+ G     + +  QN +L YA  VIL RA+P L DGLKPV RRI+  + ++ 
Sbjct: 22  LVPAETEEKSGNAKAPLANSYQNWFLEYASYVILDRAVPALLDGLKPVQRRIMHSLKELD 81

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGD 123
              + +Y K A + G  M +YHPHG+A+IY A+  M Q    R LLI+ QGN+G ++ GD
Sbjct: 82  ---DGRYNKVANVVGHSM-RYHPHGDASIYSAMVGMGQ----RNLLIDTQGNWGNTLTGD 133

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RY E RL   A  ++      T  ++ +YDG  +EP  L  ++P +L  G  GIA
Sbjct: 134 GAAAARYIEARLSPFARDVV--FNPKTTKWQLSYDGRNKEPTNLPVKFPLLLSEGAEGIA 191

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VG+A  I  HN  E++D  +  ++  + +L         PDF TG V    T   +    
Sbjct: 192 VGLACKILPHNFNEIIDAAIYHLNGDEFEL--------YPDFETGGVA-DFTNYNDGLRG 242

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR  +++R V  I      + QIV+ EIP+     ++++ I  L    +        +++
Sbjct: 243 GR--VLVRAVFDIVS----KYQIVIREIPFGCTTGSLIDSI--LSANSKGKIKIKKIEDN 294

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
             +   ++I L  G+ A   ++ LY +T  Q   + N   +    P
Sbjct: 295 TSEKAEILITLPPGSDAQATIDALYVFTDCQVSIAPNACIIEDDTP 340


>gi|330939843|gb|EGH43077.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 173

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 115/164 (70%), Gaps = 3/164 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K 
Sbjct: 11  GVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 71  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILL 173


>gi|261871064|gb|ACY02501.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 97/125 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|297242345|gb|ADI24845.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 91/121 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDAIEKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|219921025|emb|CAQ76690.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 124

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/123 (62%), Positives = 95/123 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 2   YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 62  TEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 121

Query: 191 PTH 193
           P H
Sbjct: 122 PPH 124


>gi|258648955|ref|ZP_05736424.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
 gi|260850558|gb|EEX70427.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
          Length = 896

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 192/371 (51%), Gaps = 50/371 (13%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   +N +L YA  VIL RA+P   DGLKPV RRIL  M ++    + +Y K A + G 
Sbjct: 32  LTGMYRNWFLDYASYVILERAVPHSDDGLKPVQRRILHAMKRLD---DGRYNKVANVVGH 88

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 89  TM-QFHPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDDAAAPRYIEARLSK-- 141

Query: 140 HFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD      T  ++ +YDG  +EP+ L  ++P +L  G  GIAVG++  I  HN GE+
Sbjct: 142 -FALDVVFNPKTTAWKLSYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSAKILPHNFGEL 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIKNAYATGR--GSIVI 250
              C A I           + +RG      PDF TG    G   + N Y  GR  GS+ +
Sbjct: 201 ---CQAAI-----------QYLRGEAFTIYPDFQTG----GSIDVSN-YKEGRRGGSVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I K   ++  +V+TEIP+     ++++ I     EK  + +  + D +  +   +
Sbjct: 242 R--AKISKLDNNK-TLVITEIPFGTTTQSIIDSILR-ANEKGKIKVRKVDDNTAAE-VEI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-----AFR 365
           ++ L  G S+D  ++ LY +T  +   S N V +   KP   ++  +L+  V       R
Sbjct: 297 LVHLAPGTSSDKAIDALYAFTDCEVSISPNCVVITDKKPRFLSVNEVLQQSVDRTMSLLR 356

Query: 366 EEVVVRRTKYL 376
            E+ +RR + L
Sbjct: 357 SELEIRRHELL 367


>gi|11761866|gb|AAG40223.1|AF303612_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|34541272|ref|NP_905751.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis W83]
 gi|34397588|gb|AAQ66650.1| DNA topoisomerase IV, A subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 898

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 169/327 (51%), Gaps = 31/327 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW--NKKYVKCARISGEVMG 83
           +N YL YA  VIL RA+P + DGLKPV RRIL+ M      W  N +  K A+++G+ M 
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMHH----WFDNGRMNKVAKVTGQTMA 99

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFL 142
             HPHG+A+I DAL ++ Q    +  LIE QGN+G++  GD  AA RY E +L   A   
Sbjct: 100 -LHPHGDASINDALVQLGQ----KGYLIETQGNWGNILTGDEAAAGRYIEAKLSALAQET 154

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L         ++ +YDGS  EPV L  ++P +L  G  GIAVG+ + +  HNLGE++  C
Sbjct: 155 L--FNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMAC 212

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A +     DL         PDFPTG ++       + Y  GR    I+  + I K   D
Sbjct: 213 IAHLRGESFDL--------YPDFPTGGMMDA-----SRYNDGRRGGQIKSRAKIRKL--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              + +TE+P     ++++E I +   EK  + I  + D +  +   + I L  G S+D 
Sbjct: 258 NRTLSITELPCGKTTSSLIESILK-ANEKGKIKIKRIDDMTAAEA-DIRIHLAAGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKP 349
            ++ LY +T  +   S N   +   KP
Sbjct: 316 TIDALYAFTDCEVSQSPNACVIMDDKP 342


>gi|323575343|dbj|BAJ78211.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  165 bits (417), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 95/132 (71%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 178 GGGGIAVGMATN 189
           G  GIAVG ATN
Sbjct: 121 GSSGIAVGRATN 132


>gi|326336678|ref|ZP_08202846.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691148|gb|EGD33119.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 868

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 189/371 (50%), Gaps = 30/371 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T   I+   +  +L YA  VIL RA+P L DG KPV RRI+  M ++    + +Y K A 
Sbjct: 23  TITRISGMYETWFLDYASYVILERAVPALEDGFKPVQRRIMHSMDELE---DGRYNKVAN 79

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG++G++  GD  AA RY E RL
Sbjct: 80  IVGNTM-KYHPHGDASIGDAIIQLGQ----KQLLIDTQGSWGNILTGDDAAAPRYIEARL 134

Query: 136 QKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K   F LD L    V +++ +YDG   EPV L  ++P +L  G  GIAVG++T I  HN
Sbjct: 135 SK---FALDVLFSPKVTEWQKSYDGRNDEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             E++D  V  ++    +L         PDFPT  ++   T     Y  G     IR  +
Sbjct: 192 FNELIDASVLYLEGKPFEL--------YPDFPTAGIMDAAT-----YNDGMRGGRIRVRA 238

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I +   D+  +V+TEIP+    +++++ I +   EK  + I  + D++  +   +++ L
Sbjct: 239 RIAQR--DKATLVITEIPFGTTTSSLIDSILK-ANEKGKIKILKV-DDNTAKDVEILVHL 294

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            +G S D  ++ LY +T  +   S     +   KP    +  IL+       E++ +  +
Sbjct: 295 PKGISPDKTIDALYAFTDCELSISPLCCVIEDNKPHFIGVSDILRKSTDRTVEILKKELE 354

Query: 375 YLLNKARDRAH 385
             L+    + H
Sbjct: 355 VKLDDLEQKWH 365


>gi|188994336|ref|YP_001928588.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis ATCC
           33277]
 gi|188594016|dbj|BAG32991.1| DNA topoisomerase IV A subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 898

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 169/327 (51%), Gaps = 31/327 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW--NKKYVKCARISGEVMG 83
           +N YL YA  VIL RA+P + DGLKPV RRIL+ M      W  N +  K A+++G+ M 
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMHH----WFDNGRMNKVAKVTGQTMA 99

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFL 142
             HPHG+A+I DAL ++ Q    +  LIE QGN+G++  GD  AA RY E +L   A   
Sbjct: 100 -LHPHGDASINDALVQLGQ----KGYLIETQGNWGNILTGDEAAAGRYIEAKLSALAQET 154

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L         ++ +YDGS  EPV L  ++P +L  G  GIAVG+ + +  HNLGE++  C
Sbjct: 155 L--FNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMAC 212

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A +     DL         PDFPTG ++       + Y  GR    I+  + I K   D
Sbjct: 213 IAHLRGESFDL--------YPDFPTGGMMDA-----SRYNDGRRGGQIKSRAKIRKL--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              + +TE+P     ++++E I +   EK  + I  + D +  +   + I L  G S+D 
Sbjct: 258 NRTLSITELPCGKTTSSLIESILK-ANEKGKIKIKRIDDMTAAEA-DIRIHLAAGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKP 349
            ++ LY +T  +   S N   +   KP
Sbjct: 316 TIDALYAFTDCEVSQSPNACVIMDDKP 342


>gi|149199674|ref|ZP_01876706.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
 gi|149137191|gb|EDM25612.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
          Length = 808

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 169/333 (50%), Gaps = 42/333 (12%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  +++ YA  VI  RAIPD+ DGLKPV RRIL  + +     + K+ K A I G  M  
Sbjct: 37  MTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFKAD---DGKFHKVANIVGACMA- 92

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+++IY AL  +A     +   IE QGNFG++  GD  +A RY ECRL   A   L
Sbjct: 93  YHPHGDSSIYGALVTVAN----KEYFIEKQGNFGNILTGDNASAARYIECRLSPLARETL 148

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                +T +F  +YDG  +EPV L A+ P +L+ G  GIAVGMAT I  HN  E+     
Sbjct: 149 --FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNEL----- 201

Query: 204 AVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
                    L A ++I+RG      PDF  G ++       + Y  GRG + +R    I 
Sbjct: 202 ---------LKAQIKILRGQRFEIYPDFLCGGIM-----DISQYDFGRGKVTVRAKIDI- 246

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               + + +V+ ++       +++  I E  +  +I  IA ++D +  +   + I L RG
Sbjct: 247 ---LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKI-KIASIQDYT-AEHVEIEINLPRG 301

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
             AD  LN LY +T  +   S N+  +   +P+
Sbjct: 302 VQADWALNALYAFTQCEVSLSPNITVIQRGRPK 334


>gi|237723599|ref|ZP_04554080.1| topoisomerase IV subunit A [Bacteroides sp. D4]
 gi|229438052|gb|EEO48129.1| topoisomerase IV subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 897

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 185/361 (51%), Gaps = 37/361 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF TG  I + R      Y  G    +++  + I K   D
Sbjct: 214 AYLRGEEFKL--------YPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKI--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + + E+P+      + + I +   EK  + I  + D +  +   +++ L  G S+D 
Sbjct: 258 NKTLSIAEVPFGKTVPGVCDSIVK-ASEKGKIKIRKVEDLTSEK-VEILVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-----AFVAFREEVVVRRTKYLL 377
            L+ LY +T  +   S N   ++  KP   T+  +LK          R+E+ + + + L 
Sbjct: 316 TLDALYAFTDCEVSISPNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLE 375

Query: 378 N 378
           N
Sbjct: 376 N 376


>gi|11863181|gb|AAD43483.2| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 126

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 98/122 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 2   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 62  RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 121

Query: 136 QK 137
            K
Sbjct: 122 TK 123


>gi|212690851|ref|ZP_03298979.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|237712658|ref|ZP_04543139.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
 gi|212666580|gb|EEB27152.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|229453979|gb|EEO59700.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
          Length = 897

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 185/361 (51%), Gaps = 37/361 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF TG  I + R      Y  G    +++  + I K   D
Sbjct: 214 AYLRGEEFKL--------YPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKI--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + + E+P+      + + I +   EK  + I  + D +  +   +++ L  G S+D 
Sbjct: 258 NKTLSIAEVPFGKTVPGVCDSIVK-ASEKGKIKIRKVEDLTSEK-VEILVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-----AFVAFREEVVVRRTKYLL 377
            L+ LY +T  +   S N   ++  KP   T+  +LK          R+E+ + + + L 
Sbjct: 316 TLDALYAFTDCEVSISPNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLE 375

Query: 378 N 378
           N
Sbjct: 376 N 376


>gi|265752343|ref|ZP_06088136.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
 gi|263237135|gb|EEZ22605.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 897

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 185/361 (51%), Gaps = 37/361 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF TG  I + R      Y  G    +++  + I K   D
Sbjct: 214 AYLRGEEFKL--------YPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKI--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + + E+P+      + + I +   EK  + I  + D +  +   +++ L  G S+D 
Sbjct: 258 NKTLSIAEVPFGKTVPGVCDSIVK-ASEKGKIKIRKVEDLTSEK-VEILVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-----AFVAFREEVVVRRTKYLL 377
            L+ LY +T  +   S N   ++  KP   T+  +LK          R+E+ + + + L 
Sbjct: 316 TLDALYAFTDCEVSISPNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLE 375

Query: 378 N 378
           N
Sbjct: 376 N 376


>gi|254882315|ref|ZP_05255025.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319643075|ref|ZP_07997706.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
 gi|254835108|gb|EET15417.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317385243|gb|EFV66191.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
          Length = 897

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 185/361 (51%), Gaps = 37/361 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF TG  I + R      Y  G    +++  + I K   D
Sbjct: 214 AYLRGEEFKL--------YPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKI--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + + E+P+      + + I +   EK  + I  + D +  +   +++ L  G S+D 
Sbjct: 258 NKTLSIAEVPFGKTVPGVCDSIVK-ASEKGKIKIRKVEDLTSEK-VEILVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-----AFVAFREEVVVRRTKYLL 377
            L+ LY +T  +   S N   ++  KP   T+  +LK          R+E+ + + + L 
Sbjct: 316 TLDALYAFTDCEVSISPNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLE 375

Query: 378 N 378
           N
Sbjct: 376 N 376


>gi|150002814|ref|YP_001297558.1| DNA topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294777257|ref|ZP_06742712.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
 gi|149931238|gb|ABR37936.1| topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294448877|gb|EFG17422.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
          Length = 897

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 185/361 (51%), Gaps = 37/361 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 45  QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K   F LD
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSK---FALD 153

Query: 145 D-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                 T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +
Sbjct: 154 VVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASI 213

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           A +   +  L         PDF TG  I + R      Y  G    +++  + I K   D
Sbjct: 214 AYLRGEEFKL--------YPDFQTGGSIDVSR------YNDGERGGMVKVRAKINKI--D 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + + E+P+      + + I +   EK  + I  + D +  +   +++ L  G S+D 
Sbjct: 258 NKTLSIAEVPFGKTVPGVCDSIVK-ASEKGKIKIRKVEDLTSEK-VEILVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-----AFVAFREEVVVRRTKYLL 377
            L+ LY +T  +   S N   ++  KP   T+  +LK          R+E+ + + + L 
Sbjct: 316 TLDALYAFTDCEVSISPNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLE 375

Query: 378 N 378
           N
Sbjct: 376 N 376


>gi|313674754|ref|YP_004052750.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
 gi|312941452|gb|ADR20642.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
          Length = 867

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 186/355 (52%), Gaps = 30/355 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++K    ++++   +N +L YA  VIL RA+P   DG KPV RRI+  M +M    + 
Sbjct: 17  EDKDKLHNVIAVSGMYENWFLDYASYVILERAVPANEDGFKPVQRRIMHAMKEMD---DG 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           ++ K A I G+ M +YHPHG+A+I D++  M Q    + +LIE QGN+G +  GD  AA 
Sbjct: 74  RFNKVANIIGQTM-QYHPHGDASIGDSIVNMGQ----KDILIETQGNWGDIRTGDSSAAP 128

Query: 129 RYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           RY E RL K   F LD      T +++ +YDG  +EPV L  ++P +L  G  GIAVG++
Sbjct: 129 RYIEARLSK---FALDVVFNPQTTEWQLSYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLS 185

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T I  HN  E++  C+ V+ N  I++         PDFPTG +        + Y  G   
Sbjct: 186 TKILPHNFCELIKACIDVLKNKKIEI--------YPDFPTGGM-----ADFSEYNQGLRG 232

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IR  + IE+  G++  +++  IP+      ++E I +   +K  + +  + D + +  
Sbjct: 233 GKIRVRAKIEE--GEKRTLLIKNIPFGTTTTGLIESIIK-ANDKGKIKVKKVVDNTAKD- 288

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
             + ++L  G S D+ ++ LY +T  +   S N   +   KP    +  ILK  V
Sbjct: 289 VEIEVQLAAGQSPDITIDALYAFTDCEISISPNACVIIEDKPIFLPVNEILKKNV 343


>gi|213162316|ref|ZP_03348026.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 134

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 102/134 (76%), Gaps = 1/134 (0%)

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           +VNG  GIAVGMATNIP HNL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR
Sbjct: 1   MVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGR 60

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
            GI+ AY TGRG + IR  + +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+
Sbjct: 61  RGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRV 120

Query: 294 VDIADLRDESDRQG 307
             I+ LRDESD+ G
Sbjct: 121 EGISALRDESDKDG 134


>gi|86143381|ref|ZP_01061783.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
 gi|85830286|gb|EAQ48746.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
          Length = 875

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 175/341 (51%), Gaps = 28/341 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G T   +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  +    + 
Sbjct: 14  EDENSGETITRVTGMFKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DG 70

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAE 128
           +Y K A I G  M +YHPHG+A+I DA+ +M Q    + LLI+ QGN+G ++ GD  AA 
Sbjct: 71  RYNKVANIVGHTM-QYHPHGDASIADAMVQMGQ----KDLLIDTQGNWGNTLTGDSAAAS 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A  +L        D++ +YDG  +EP+ L  ++P +L  G  GIAVG++T
Sbjct: 126 RYIEARLSKFALEVL--FSPKITDWQASYDGRRKEPINLPVKFPLLLAQGAEGIAVGLST 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +  HN  E++D  V  ++     +         PDFP+     G     + Y  G+   
Sbjct: 184 KVLPHNFVELIDASVKHLEGKKFKI--------LPDFPSA----GEADFSD-YKDGKRGG 230

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + I +   D+  +V+TEIP+     ++++ I +   +K  + I  + D +  Q  
Sbjct: 231 RIRVRAKISQL--DKNTLVITEIPFTTTTTSLIDNILK-ANDKGKLKIKRIEDNTSSQ-V 286

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
            +++ L  G S D  +  LY +T+ +   S     +   KP
Sbjct: 287 EILVHLPAGLSPDKTIGALYAFTNCEVSISPLGCVIEDNKP 327


>gi|11863187|gb|AAD43499.2| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 126

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 98/122 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 2   INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+A+IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 62  RIVGDVMGKYHPHGDASIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 121

Query: 136 QK 137
            K
Sbjct: 122 TK 123


>gi|3411080|gb|AAC31138.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411082|gb|AAC31139.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411084|gb|AAC31140.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411086|gb|AAC31141.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411088|gb|AAC31142.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411090|gb|AAC31143.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411092|gb|AAC31144.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 97/122 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 9   INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 69  RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128

Query: 136 QK 137
            K
Sbjct: 129 TK 130


>gi|166154877|ref|YP_001653132.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930865|emb|CAP06427.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 178/342 (52%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP+G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPSGG-----TMDASDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|166154002|ref|YP_001654120.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 434/Bu]
 gi|301335201|ref|ZP_07223445.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis L2tet1]
 gi|165929990|emb|CAP03473.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
          Length = 490

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 178/342 (52%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP+G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPSGG-----TMDASDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|33469558|gb|AAQ19804.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 136

 Score =  164 bits (414), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/136 (55%), Positives = 99/136 (72%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ +IYDA+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + 
Sbjct: 61  QDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTE 120

Query: 162 QEPVVLCARYPNVLVN 177
           +EP VL A +PN+LVN
Sbjct: 121 KEPTVLPAAFPNLLVN 136


>gi|297242321|gb|ADI24833.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 92/121 (76%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +KKYVK AR+ G+ +GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 1   HKKYVKSARVVGDAIGKYHPHGDSAVYDKIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 60

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 61  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 120

Query: 188 T 188
           T
Sbjct: 121 T 121


>gi|294054277|ref|YP_003547935.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613610|gb|ADE53765.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 691

 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 179/358 (50%), Gaps = 39/358 (10%)

Query: 8   SDEEEEKGITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           SDEE     T     D+M    +L YA  VIL RA+P   DGLKPV RRIL  M ++   
Sbjct: 28  SDEEIFNLKTDTGHVDDMFSEWFLDYASYVILERAVPHANDGLKPVQRRILHSMRELE-- 85

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPP 125
            + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G +  GD  
Sbjct: 86  -DGRYNKVANVIGNTM-KYHPHGDASICDAMVQLGQ----KDLLIDTQGNWGNTFTGDSA 139

Query: 126 AAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RY E RL K   F LD      T ++  +YDG  +EP  L  ++P +L  G  GIAV
Sbjct: 140 AAARYIEARLSK---FALDVVFNPKTTNWLASYDGRNKEPETLPVKFPLLLAQGVEGIAV 196

Query: 185 GMATNIPTHNLGEVVDGCVAVI--DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           G+A  I  HN  E++DGC++ +    P+I           PDFPTG +        + Y 
Sbjct: 197 GLACKILPHNFIELIDGCISFLRKQTPEI----------VPDFPTGGI-----ADVSEYN 241

Query: 243 TGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
            G+  G + +R      K    +  + +TE+P+     ++++ I     +K  + I+ + 
Sbjct: 242 NGKRGGRVKVRARMEARK----KNLLAITELPFGKTTTSLIDSILS-ANDKGKIKISRVE 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           D +  +   ++I L  G+  +     LY +T  +   S N+  +   KP  F  + +L
Sbjct: 297 DNTADK-VEILIYLPSGSDPETAEQALYAFTDCEVSVSTNICVIENEKPHFFAAVDLL 353


>gi|291513745|emb|CBK62955.1| DNA topoisomerase IV subunit A [Alistipes shahii WAL 8301]
          Length = 954

 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 185/352 (52%), Gaps = 34/352 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +EE G+    +T   +N +L YA  VIL RA+P + DGLKPV RRIL  M  +    + +
Sbjct: 48  QEEGGVRK--LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHAMKVVD---DGR 102

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAER 129
           Y K A + G+ M +YHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA R
Sbjct: 103 YNKVANLVGQTM-QYHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGR 157

Query: 130 YTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           Y E RL K   F LD    K T ++  +YDG  +EPV L  ++P +L  G  GIAVG+A+
Sbjct: 158 YIEARLSK---FALDVVFNKKTTEWMLSYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLAS 214

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  HN  E+++  +A +   D  L         PDFPTG   +      N    G G++
Sbjct: 215 KILPHNFVELINAAIAHLQGRDFQL--------YPDFPTGG--MADVSRYNDGLRG-GTV 263

Query: 249 VIRG-VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +R  +S I     D+  + +TEIPY     ++ + I +   +K  + I  + D++    
Sbjct: 264 KVRAKISKI-----DKRTLAITEIPYTTTTESIKDSIIK-ANDKGKIKIRKV-DDNTADK 316

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             +VI++    S+D  ++ LY +T  +   + N   +   KP    +  IL+
Sbjct: 317 VEIVIQVSPDESSDKTIDALYAFTDCEVSIAPNSCVIWDEKPHFLGVSEILR 368


>gi|1845587|emb|CAA55580.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 122

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 74/121 (61%), Positives = 95/121 (78%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 L 167
           +
Sbjct: 121 M 121


>gi|297242349|gb|ADI24847.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 91/121 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDALKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|289525704|emb|CBJ15185.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296435273|gb|ADH17451.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/150]
 gi|296438992|gb|ADH21145.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/11023]
          Length = 490

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 177/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPPGGTMDA-----SDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|330980279|gb|EGH78415.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 118

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 92/113 (81%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGD 115


>gi|255311486|ref|ZP_05354056.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276]
 gi|255317787|ref|ZP_05359033.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276s]
          Length = 490

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 177/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPPGG-----TMDASDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|11863185|gb|AAD43498.2| DNA gyrase subunit A [Staphylococcus hominis subsp. hominis]
 gi|12585583|gb|AAG49417.1| gyrase [Staphylococcus hominis subsp. hominis]
          Length = 126

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 98/122 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 2   INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 62  RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 121

Query: 136 QK 137
            K
Sbjct: 122 TK 123


>gi|297242383|gb|ADI24864.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 91/121 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKK+VK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKFVKSARVVGDAIVKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+T++F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|91217686|ref|ZP_01254643.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
 gi|91184190|gb|EAS70576.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
          Length = 863

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 166/320 (51%), Gaps = 32/320 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV +T   Q  +L YA  VIL RA+P + DG KPVHRRIL  M  +    + +Y K A I
Sbjct: 23  SVKVTGMFQEWFLDYASYVILERAVPAIEDGFKPVHRRILHSMKDLD---DGRYTKVANI 79

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQ 136
            G  M +YHPHG+A+I DA+ ++ Q    + +LI+ QGN+G++  GD  AA RY E RL 
Sbjct: 80  VGHTM-QYHPHGDASIGDAIVQIGQ----KDILIDTQGNWGNILTGDRAAASRYIEARLS 134

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  ++      T +++ +YDG  QEPV L  ++P VL  G  GIAVG++T I  HN  
Sbjct: 135 KFALEVV--FNPKTTEWQISYDGRKQEPVNLPVKFPMVLAQGAEGIAVGLSTKILPHNFI 192

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVS 254
           E++D  +  ++     +         PDF TG +      + N Y  G   G I +R   
Sbjct: 193 ELIDASIKHLEGKRFTI--------FPDFATGGI----ADVSN-YNDGLRGGKIRVRATI 239

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            ++    D+  +V+ EIPY  N + +++ I  L    +        +++      +++ L
Sbjct: 240 EVK----DKNLLVINEIPYSTNTSTLIDSI--LKANDKGKIKIKKIEDNTSSDVEILVHL 293

Query: 315 KRGASADVILNQLYRYTSLQ 334
               S D  ++ L+ +T+ +
Sbjct: 294 PNNISPDKTIDALFAFTNCE 313


>gi|269148348|gb|ACZ28545.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148352|gb|ACZ28547.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 115

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 115


>gi|255036406|ref|YP_003087027.1| DNA topoisomerase IV subunit A [Dyadobacter fermentans DSM 18053]
 gi|254949162|gb|ACT93862.1| DNA topoisomerase (ATP-hydrolyzing) [Dyadobacter fermentans DSM
           18053]
          Length = 914

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 190/367 (51%), Gaps = 42/367 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  + D E+      + I+   +N +L YA  VIL RA+P + DGLKPV RRI+  +
Sbjct: 1   MDENGAAPDVEDSGLHDKLPISGLYENWFLDYASYVILERAVPAIEDGLKPVQRRIMHAL 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + ++ K A + G  M +YHPHG+A+IYDA+  + Q    + LL + QGN+G +
Sbjct: 61  NEMD---DGRFNKVANVVGSSM-QYHPHGDASIYDAIVNIGQ----KELLFDTQGNWGDI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL +    ++     DT +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 RTGDGAAAARYIEVRLSRFGKDVV--FNDDTTEWQLSYDGRKREPITLPVKFPLLLTLGV 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  + ++   ++ +         PDF TG ++     + N
Sbjct: 171 EGIAVGLSTKILPHNFCELIEASIGILQGKEVTI--------YPDFLTGGLV----DVSN 218

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI-----AELVREKRIV 294
            Y  G     +R  + IE+   D++ +V+ +IP+     +++E I     A  ++ K++V
Sbjct: 219 -YNDGHRGGKVRVRAKIEEE--DKKMLVIRDIPFGTTTTSLIESIIKANDAGKIKIKKVV 275

Query: 295 D--IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           D   AD+          + + L  G S D+ ++ LY +T  +   S N   +   KP   
Sbjct: 276 DNTAADV---------EIQVHLAPGVSPDITMDALYAFTECEVSISPNACIIIAEKPHFV 326

Query: 353 TLIGILK 359
            +  ILK
Sbjct: 327 GVTDILK 333


>gi|15605393|ref|NP_220179.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|3329110|gb|AAC68255.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|297748791|gb|ADI51337.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749671|gb|ADI52349.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 177/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPPGG-----TMDASDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|219921136|emb|CAQ76693.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 119

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 93/119 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 119


>gi|269148270|gb|ACZ28506.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148290|gb|ACZ28516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148292|gb|ACZ28517.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148300|gb|ACZ28521.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148344|gb|ACZ28543.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148346|gb|ACZ28544.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148364|gb|ACZ28553.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148366|gb|ACZ28554.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148372|gb|ACZ28557.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148380|gb|ACZ28561.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148382|gb|ACZ28562.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148384|gb|ACZ28563.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148386|gb|ACZ28564.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148396|gb|ACZ28569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148432|gb|ACZ28587.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|255570740|ref|XP_002526324.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534351|gb|EEF36060.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 433

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/448 (28%), Positives = 220/448 (49%), Gaps = 44/448 (9%)

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLD 526
           L R    NE   L  +I    ++LSSR  +L +I+QE + +K++  +PRR+ + +     
Sbjct: 3   LQRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASPRRSSLEDSDGSQ 62

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           ++D D +  E+M++  S  GYVKR+    +  Q RG  G+S   +R  D ++D  +   H
Sbjct: 63  LDDIDVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDSIVCRAH 122

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             VL+FS LG VY  + +++P  S  A G  L+ ILSL+ GERIT+I+P  E      + 
Sbjct: 123 DHVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFS---GDQ 179

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +++  T +G +++  L+ F  I  +G IA++L   DE+  V  CT  + + + +  G  +
Sbjct: 180 FLLMLTVNGYIKKVPLNLFSAIRSTGIIAIQLVPGDELKWVRCCTNNDLVAMASLNGMVI 239

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                 IR  + RN+ G   + L  GD++ SM I+  A     ER+              
Sbjct: 240 LSSCENIRALS-RNTRGGVAMRLKGGDKMASMDIIPVAMRKDLERV-------------- 284

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                +   +++S   G               ++L VSE G+GKR     FR+S  +  G
Sbjct: 285 -----LEDPRSNSKGSG--------------PWLLFVSENGYGKRVPLSSFRLSPLNRVG 325

Query: 827 IRATDVSKINEIGALVAV-FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           +     S  +++ A+  V F + +    ++Q++LVS  GT+ R+ V +I I SR  +GV+
Sbjct: 326 LIGYKFSAEDQLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVQDISIQSRFARGVI 385

Query: 882 IFSTAKDERVVSVERIRESEIVDEAEST 909
           +    +  ++ S   I   E  +  EST
Sbjct: 386 LMRLEQAGKIQSASLISTME-AEPKEST 412


>gi|124009385|ref|ZP_01694063.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
 gi|123985047|gb|EAY24998.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
          Length = 663

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 190/370 (51%), Gaps = 45/370 (12%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V+I++  ++ +L YA  VIL RA+P   DGLKPV RRIL  M +M    + +Y K A 
Sbjct: 6   NKVTISEVYKDWFLDYASYVILERAVPSGYDGLKPVQRRILHAMKEMD---DGRYNKVAN 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-GDPPAAERYTECRL 135
           + G+ M +YHPHG+A+I DAL  M Q    + LL++ QGN+G ++ GD  AA RY E RL
Sbjct: 63  VIGQAM-QYHPHGDASIGDALVNMGQ----KDLLVDTQGNWGDINTGDSAAAPRYIEGRL 117

Query: 136 QKAAHFLLDDL-GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K   F LD +    T +++ +YDG  +EPV L  ++P +L  G  GIAVG+AT +  HN
Sbjct: 118 SK---FALDVIFNPQTTEWQLSYDGRKKEPVNLPVKFPLLLAQGTEGIAVGLATKVMPHN 174

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             E++D  + ++   ++ +         PDF TG   +  T  ++    GR    +R   
Sbjct: 175 FNELIDASIELLRGNEVTI--------YPDFATGGT-MDVTNYRHGVKGGR----LRVRV 221

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKI-----AELVREKRIVDIADLRDESDRQGYR 309
            IE+ S  R+ + +  +PY V    ++E I     A  ++ K+I+D       +  +   
Sbjct: 222 DIEQVS--RKILAIKNVPYGVTTENLIESIKKANDANKIKVKKIID-------NTAKDVE 272

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP-----ERFTLIGILKAFVAF 364
           + + L  G   +  ++ LY +T+ +   S N   +   KP     E    I   K     
Sbjct: 273 IQVHLSTGVEPEQTIDALYAFTNCEVSISPNACVILDDKPCFIKVEELLKINTQKTKDLL 332

Query: 365 REEVVVRRTK 374
            +E+++R+++
Sbjct: 333 EQELLIRKSE 342


>gi|297242335|gb|ADI24840.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 91/121 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDAIKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|269148378|gb|ACZ28560.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD   A RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSATAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|237805011|ref|YP_002889165.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273311|emb|CAX10226.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 490

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 178/343 (51%), Gaps = 34/343 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI-- 256
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTMDA-----SDYQDGLGSIVLRATIDIIN 219

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +
Sbjct: 220 DKT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 272 GIYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|11863183|gb|AAD43488.2| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 126

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 97/122 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 2   INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 62  RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 121

Query: 136 QK 137
            K
Sbjct: 122 TK 123


>gi|297242313|gb|ADI24829.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 91/121 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|76789400|ref|YP_328486.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237803090|ref|YP_002888284.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|76167930|gb|AAX50938.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231274324|emb|CAX11119.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|296436200|gb|ADH18374.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9768]
 gi|296438060|gb|ADH20221.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11074]
 gi|297140562|gb|ADH97320.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9301]
          Length = 490

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 177/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPPGG-----TMDASDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|87240782|gb|ABD32640.1| WD40-like [Medicago truncatula]
          Length = 398

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 207/415 (49%), Gaps = 44/415 (10%)

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +I+QE + +K++  +PRR+ I+E   D  +ED D I  E+M++T+S  GY+KR+  S + 
Sbjct: 15  VIEQEAIDLKNKFASPRRS-ILEDTDDGQLEDIDVIPNEEMLLTLSEKGYLKRMKPSTFN 73

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RG  G+S   ++  D ++D  +   H  VL+FS  G VY  + +++P  S  A G  
Sbjct: 74  LQHRGTIGKSVGKLKMNDSMSDFIVCRAHDFVLYFSDKGTVYSARAYKIPECSRTASGTP 133

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+ ILSL+ GERIT+I+P  E     ++ +++  T  G ++R  L+ F  I  SG IA++
Sbjct: 134 LVQILSLSDGERITSIIPVSEFT---DDQFLLMLTMQGYIKRVPLNSFSSIRSSGIIAIQ 190

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE+  V  CT ++ + + +  G  +      IR   GRN+ G   + L +GD++ S
Sbjct: 191 LVPGDELKWVRCCTNDDFVAMASHNGMVILSLCIQIRTL-GRNTRGALAMRLKEGDRMAS 249

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + I+  A  +  E I  +                     N  S +G              
Sbjct: 250 VDIIPAAMWNNLETISKLPE------------------SNGKSYDG-------------- 277

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVND----NDQ 852
            ++L +SE G GKR     FR+S+ +  G+     S  + + A+  V F + +    ++Q
Sbjct: 278 PWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFVVGFTLAEDGESDEQ 337

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++LVS  GT+ R+ V +I I SR  +GV++       ++ +   I  +E   E E
Sbjct: 338 VVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTASLISATECEPEEE 392


>gi|284037117|ref|YP_003387047.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
 gi|283816410|gb|ADB38248.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
          Length = 904

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 183/341 (53%), Gaps = 33/341 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    + ++ K A + G+ M ++
Sbjct: 57  ENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEMD---DGRFNKVANVIGQTM-QF 112

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I +AL  + Q    + LL + QG++G V  GD  AA RY E RL K   F  D
Sbjct: 113 HPHGDASIGEALVNIGQ----KELLFDTQGSWGDVRTGDGAAAPRYIEVRLSK---FAQD 165

Query: 145 DLGKD-TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +  D T +++ +YDG  +EP+ L  ++P +L  G  GIAVG++T I  HN  E++D  +
Sbjct: 166 AIYNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFNELIDASI 225

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            ++ +  + L         PDF TG +I     + N Y  G     +R  + IE+   D+
Sbjct: 226 NILKDKPVSL--------FPDFQTGGLI----DVSN-YNDGHRGGKVRVRAKIEEV--DK 270

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD-----ESDRQGYRVVIELKRGA 318
           + + + ++PY V  + +++ I +     +I   A  R+     ++  +   +++ L+ G 
Sbjct: 271 KILAIRDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEILVHLQPGV 330

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           S DV ++ LY +T  +   S N   + G KP   ++  IL+
Sbjct: 331 SPDVTIDALYAFTDCEVSISPNACVIIGDKPHFVSVTDILR 371


>gi|296437129|gb|ADH19299.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11222]
          Length = 490

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 177/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  +++
Sbjct: 116 KEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
           +  +A++++    L         PDFP G      T   + Y  G GSIV+R    I  +
Sbjct: 174 EAQIAILNDQPFSL--------LPDFPPGG-----TMDASDYQDGLGSIVLRATIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G
Sbjct: 221 KT------LLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             A  +L  LY +T  Q + +    A+   KP   T+  IL+
Sbjct: 273 IYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILR 314


>gi|269148286|gb|ACZ28514.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148330|gb|ACZ28536.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148338|gb|ACZ28540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148340|gb|ACZ28541.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148412|gb|ACZ28577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|294765300|gb|ADF35685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|86133356|ref|ZP_01051938.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
 gi|85820219|gb|EAQ41366.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
          Length = 912

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 193/384 (50%), Gaps = 38/384 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D  +E+ IT V  T   +  +L YA  VIL RA+P L DGLKPV RRI+  M  +   
Sbjct: 20  NTDSPQEETITKV--TGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKDLD-- 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 76  -DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KELLIDMQGNWGNILTGDRA 129

Query: 126 AAERYTECRLQKAAHFLLD-DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RY E RL K   F LD      T +++ +YDG  +EP+ L  ++P +L  G  GIAV
Sbjct: 130 AASRYIEARLSK---FALDVVFNPKTTEWKLSYDGRRKEPIDLPVKFPLLLAQGAEGIAV 186

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T I  HN  E++D  +  +      L         PDF TG    G     N Y  G
Sbjct: 187 GLSTKILPHNFNELIDASIKYLKGRSFKL--------VPDFLTG----GIADFTN-YNDG 233

Query: 245 R--GSIVIRG-VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           +  G + IR  +S +     D++ +V+TEIP+    +++++ I  L    +        +
Sbjct: 234 KRGGKVRIRAKISQL-----DKKTLVITEIPFSTTTSSLIDSI--LKANDKGKIKIKKIE 286

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++      +++ L    S D  ++ LY +T+ ++  S     +    P    +  +LK  
Sbjct: 287 DNTAAEVEILVHLPPNVSPDKSIDALYAFTNCETSISPLACTIKDNTPVFTGVSDMLKHS 346

Query: 362 VAFREEVVVRRTKYLLNKARDRAH 385
                E++ R  +  LN+  ++ H
Sbjct: 347 TDLTVELLKRELEIQLNELEEQWH 370


>gi|269148308|gb|ACZ28525.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVGNYDG 115


>gi|83777805|gb|ABC47039.1| gyrase A subunit [Yersinia enterocolitica]
          Length = 107

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 90/107 (84%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           HG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 107


>gi|269148406|gb|ACZ28574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148414|gb|ACZ28578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148442|gb|ACZ28592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|294765306|gb|ADF35687.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|229496072|ref|ZP_04389794.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
 gi|229316968|gb|EEN82879.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
          Length = 899

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 195/398 (48%), Gaps = 39/398 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+    +  +L YA  VIL RA+P + DGLKPV RRIL+ M       N    K A+I G
Sbjct: 47  SLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQLFE---NGHLHKVAKIVG 103

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKA 138
           + M  +HPHG+A+I DAL ++ Q    +  LI+ QGN+G ++ GD  AA RY E +L   
Sbjct: 104 QTMA-FHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYIEAKLSSL 158

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D      +++  YDG+  EPV L  R+P +L  G  GIAVG+++ I  HN  E+
Sbjct: 159 ALEVLFD--SKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKEL 216

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A +     +L         PDFPTG ++       + Y  G     ++  + IEK
Sbjct: 217 LEAAIAYLRGESFEL--------YPDFPTGGLL-----DVDKYNDGHRGGALKCRAKIEK 263

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D   + +TE+P+     +++E I +   EK  + I  + D +      + I+L  G 
Sbjct: 264 I--DDRVLSITELPFGKTTTSLIESILK-ANEKGKIKIKHIDDMTAATA-DIRIQLPAGV 319

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S D  ++ LY +T  +   S N   +    P    +  +LK      +E++V +  Y L 
Sbjct: 320 STDKTIDGLYAFTDCEVGLSPNACVIKEGTPVFLGVSDLLKYSADRTKELLVAQLNYRLG 379

Query: 379 KARDRAHVLVGLAIAVANLDEVV---RIIRFSPNPETA 413
           + +D        A+  A+L+ +    RI +  P  E A
Sbjct: 380 EVQD--------ALVTASLERIFIENRIYKDKPFEEAA 409


>gi|269148354|gb|ACZ28548.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242323|gb|ADI24834.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/121 (61%), Positives = 90/121 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+   KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   NKKYVKSARVVGDAPDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|225012789|ref|ZP_03703223.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
 gi|225003063|gb|EEG41039.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
          Length = 865

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 28/321 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +T   ++ +L YA  VIL RA+P + DGLKPV RRIL  M  +    + +Y K A I 
Sbjct: 19  VKVTGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRILHSMKDLD---DGRYNKVANIV 75

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K
Sbjct: 76  GHTM-QYHPHGDASIADAMVQVGQ----KELLIDMQGNWGNILTGDSAAASRYIEARLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  ++        D++ +YDG  +EP+ L  ++P +L  G  GIAVG++T I  HN  E
Sbjct: 131 FALEVV--FSPKVTDWQLSYDGRKKEPIHLPVKFPLLLAQGAEGIAVGLSTKILPHNFNE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++   +  +    ID+         PDF TG VI     ++N     RG  V R  + I 
Sbjct: 189 LLQASIQHLKGKKIDV--------YPDFQTGGVI----DVQNYNEGLRGGKV-RVRAKI- 234

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  D+  +V+ EIP+  N +++++ I  L   ++        +++      +++ L   
Sbjct: 235 -TQQDKNTLVINEIPFSTNTSSLIDSI--LKANEKGKIKIKKIEDNTASEVEILVHLPND 291

Query: 318 ASADVILNQLYRYTSLQSLFS 338
            S D +++ LY +T+ ++  S
Sbjct: 292 ISPDKMIDALYAFTACETSIS 312


>gi|12585585|gb|AAG49418.1| gyrase [Staphylococcus hominis subsp. novobiosepticus]
          Length = 126

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 97/122 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K A
Sbjct: 2   INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE ++
Sbjct: 62  RIVGDVMGKYHPHGDFSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 121

Query: 136 QK 137
            K
Sbjct: 122 TK 123


>gi|297242347|gb|ADI24846.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/121 (61%), Positives = 91/121 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +KKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 2   HKKYVKSARVVGDAISKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMA
Sbjct: 62  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMA 121

Query: 188 T 188
           T
Sbjct: 122 T 122


>gi|154362217|gb|ABS80936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 92/116 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|269148296|gb|ACZ28519.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFG++DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGTIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|325287882|ref|YP_004263672.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324323336|gb|ADY30801.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 879

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 190/371 (51%), Gaps = 41/371 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++    + +Y K A + G 
Sbjct: 25  VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD---DGRYNKVANVVGH 81

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 82  TM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSK-- 134

Query: 140 HFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD +    + +++ +YDG  +EPV L  ++P +L  G  GIAVG++T I  HN  E+
Sbjct: 135 -FALDVVFSPKITEWQQSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIEL 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  +      L         PDFPT  +I   TG  +    G+    IR  + I +
Sbjct: 194 IDSSIKHLKGQKFKL--------FPDFPTSGII-DVTGYNDGLRGGK----IRVRAKISQ 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +  D+  +V++EIPY  N +++++ I  L    +        +++      +++ L  G 
Sbjct: 241 S--DKNTLVISEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTAADVEILVHLPAGI 296

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S D  ++ LY +T+ +S  S     +   KP     IG+         E++ R T Y + 
Sbjct: 297 SPDKTIDALYAFTACESSISPLGCIIEDNKP---LFIGVT--------EMLQRSTDYTVE 345

Query: 379 KARDRAHVLVG 389
             ++   + +G
Sbjct: 346 LLKEELEIQLG 356


>gi|76800082|ref|ZP_00781975.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|76584618|gb|EAO61431.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
          Length = 245

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 158/240 (65%), Gaps = 3/240 (1%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL+   R++ IIK+E+  V
Sbjct: 6   LSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEV 65

Query: 509 KDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           K +    RRT ++ G +L +EDED I  ED+++T+S+ GY+KR+    +RAQ+RGG+G  
Sbjct: 66  KRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 125

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
           G  + ++DFV +L   STH +VLFF++LG VY+ K + +P     A+G  ++N+L L++G
Sbjct: 126 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEG 185

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E I TI+   +++ +  N Y  F T+ G V+R  +S+F  I ++G  A+ L   DE+++V
Sbjct: 186 ETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINV 243



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S KG+ KR +  +FR   R G+GI+ T V+  + +  LV+    + +D ++  ++ 
Sbjct: 97  LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVS---TSTHDTVLFFTNL 153

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887
           G + R+   EI    R  KG+ I +  K
Sbjct: 154 GRVYRLKAYEIPEYGRTAKGLPIVNLLK 181


>gi|269148258|gb|ACZ28500.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148262|gb|ACZ28502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148264|gb|ACZ28503.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148266|gb|ACZ28504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148268|gb|ACZ28505.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148272|gb|ACZ28507.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148276|gb|ACZ28509.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148280|gb|ACZ28511.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148282|gb|ACZ28512.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148284|gb|ACZ28513.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148288|gb|ACZ28515.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148294|gb|ACZ28518.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148306|gb|ACZ28524.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148310|gb|ACZ28526.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148314|gb|ACZ28528.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148318|gb|ACZ28530.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148322|gb|ACZ28532.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148324|gb|ACZ28533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148326|gb|ACZ28534.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148334|gb|ACZ28538.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148370|gb|ACZ28556.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148374|gb|ACZ28558.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148376|gb|ACZ28559.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148390|gb|ACZ28566.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148392|gb|ACZ28567.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148394|gb|ACZ28568.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148398|gb|ACZ28570.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148400|gb|ACZ28571.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148404|gb|ACZ28573.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148408|gb|ACZ28575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148418|gb|ACZ28580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148420|gb|ACZ28581.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148424|gb|ACZ28583.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148426|gb|ACZ28584.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148428|gb|ACZ28585.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148430|gb|ACZ28586.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148440|gb|ACZ28591.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148450|gb|ACZ28596.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148452|gb|ACZ28597.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148454|gb|ACZ28598.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|294765303|gb|ADF35686.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|258611761|ref|ZP_05711629.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
 gi|258605976|gb|EEW18584.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
          Length = 504

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 219/423 (51%), Gaps = 51/423 (12%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           +N L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R
Sbjct: 1   MNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARAR 60

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            H+L GL  A++ LDEV+++IR S +   A+  L                          
Sbjct: 61  QHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ------------------------- 95

Query: 444 DGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
             T Y  SE Q  AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K
Sbjct: 96  --TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLK 153

Query: 503 QELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+  GYVKR     Y A  
Sbjct: 154 EELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS- 212

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALI 619
                 + + M++ D    +  +++  S+L F+S G F+Y+  V  LP    +  G  + 
Sbjct: 213 ----NGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVS 267

Query: 620 NILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
           ++ S L+ GE I +   I  F E++        +F TK+G  +++ ++++ +  R  K  
Sbjct: 268 HLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITNY-KPQRYSKSM 320

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +A+KL   DE+LSV       DI L TK G  +R+ I+ I   +G  + GV+ I+L + D
Sbjct: 321 MAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTAGVKAINLKQDD 379

Query: 734 QVI 736
            VI
Sbjct: 380 IVI 382


>gi|126661927|ref|ZP_01732926.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
 gi|126625306|gb|EAZ95995.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
          Length = 902

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 193/383 (50%), Gaps = 30/383 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  M ++
Sbjct: 39  HFYENNENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKEL 96

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + L+I+ QGN+G++  G
Sbjct: 97  D---DGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDLIIDMQGNWGNILTG 148

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E R+ K  H +L        ++  +YDG   EP+ L  ++P +L  G  GI
Sbjct: 149 DSAAASRYIEARISKFGHDVL--YSPKITEWGMSYDGRRAEPINLPVKFPLLLAQGAEGI 206

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG++T +  HN  E++D  + ++      L         PDFPT  +      + N Y 
Sbjct: 207 AVGLSTKVLPHNFNELIDSSIKILKGKPFTL--------FPDFPTAGI----ADVSN-YN 253

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G     +R  + I +   D++ +V+T+IP+  N + +++ I  L   ++        ++
Sbjct: 254 DGLRGGRVRVRAKIGQL--DKQTLVITQIPFSTNTSTLIDSI--LKANEKGKIKIKKIED 309

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +      ++I L  G S D +++ LY +T+ ++  +     +   KP    +  +LK   
Sbjct: 310 NTAAEVEILIHLPAGVSPDKMIDALYAFTACETSVAPLGCVIENNKPLFIGVSDMLKIST 369

Query: 363 AFREEVVVRRTKYLLNKARDRAH 385
               +++ R  +  L++  ++ H
Sbjct: 370 NRTVDLLKRELEIQLDELENKWH 392


>gi|62125791|gb|AAX63809.1| topoisomerase II subunit A [Haemophilus quentini]
          Length = 121

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 89/121 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIA
Sbjct: 61  APAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIA 120

Query: 184 V 184
           V
Sbjct: 121 V 121


>gi|154362219|gb|ABS80937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 91/116 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|269148416|gb|ACZ28579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148422|gb|ACZ28582.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148444|gb|ACZ28593.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148446|gb|ACZ28594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|294765294|gb|ADF35684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242315|gb|ADI24830.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/120 (61%), Positives = 90/120 (75%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 3   KKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|269148260|gb|ACZ28501.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148274|gb|ACZ28508.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148278|gb|ACZ28510.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148298|gb|ACZ28520.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148304|gb|ACZ28523.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148312|gb|ACZ28527.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148316|gb|ACZ28529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148320|gb|ACZ28531.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148328|gb|ACZ28535.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148332|gb|ACZ28537.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148336|gb|ACZ28539.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148342|gb|ACZ28542.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148350|gb|ACZ28546.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|269148356|gb|ACZ28549.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148360|gb|ACZ28551.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148362|gb|ACZ28552.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148368|gb|ACZ28555.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148388|gb|ACZ28565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148402|gb|ACZ28572.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148410|gb|ACZ28576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148434|gb|ACZ28588.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148436|gb|ACZ28589.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148438|gb|ACZ28590.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148448|gb|ACZ28595.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|294765291|gb|ADF35683.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  160 bits (405), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|305666739|ref|YP_003863026.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
 gi|88708963|gb|EAR01197.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
          Length = 892

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 171/333 (51%), Gaps = 34/333 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRIL  + ++    + +Y K A + G 
Sbjct: 33  VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRILHSLKELD---DGRYNKVANVVGH 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 90  TM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSK-- 142

Query: 140 HFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD +    + +++ +YDG  +EPV L  ++P +L  G  GIAVG++T +  HN  E+
Sbjct: 143 -FALDVVFSPKITEWQLSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFNEL 201

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHI 256
           +D  +  +      L         PDFPT  +I       N Y  G   G I +R     
Sbjct: 202 IDASIKHLKGQRFKL--------YPDFPTAGII-----DVNNYNDGLRGGKIRVRA---- 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
             +  D+  +V+ EIPY  N +++++ I  L    +        +++      +++ L  
Sbjct: 245 RMSQKDKNTLVINEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTAADVEILVHLPS 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           G S D  ++ LY +TS +S  S     +   KP
Sbjct: 303 GISPDKTIDALYAFTSCESSISPLSCIIEDNKP 335


>gi|300777684|ref|ZP_07087542.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
 gi|300503194|gb|EFK34334.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
          Length = 863

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 180/355 (50%), Gaps = 28/355 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++++E   +G +   ++   ++ +L YA  VIL RAIP + DGLKPV RRI+  M ++  
Sbjct: 1   MTTEEYSHEGESLKKVSGLYKDWFLDYASYVILDRAIPSIYDGLKPVQRRIMHSMRELE- 59

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDP 124
             + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD 
Sbjct: 60  --DGRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNIYTGDS 112

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY E RL   A  ++      T ++  +YDG   EP+ L  ++P +L  G  GI V
Sbjct: 113 AAAARYIEARLTPFALEVV--FNPKTTEWTKSYDGRNNEPIDLPVKFPLLLAQGVEGIGV 170

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T I  HN  E+++  VA +     +L         PDF T   +       + Y  G
Sbjct: 171 GLSTKILPHNFNELINASVAYLKGKKFEL--------YPDFLTAGYL-----DVSEYNDG 217

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                +R  + I +T  D+  +V++E+PY      +++ I +   + +I       + SD
Sbjct: 218 HRGGKVRARAKITQT--DKHTLVISELPYSKTTTDLIDSILKANEKGKIKIKKIEDNTSD 275

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           +    ++I +    S D  ++ LY +T  Q   S N   + G KP    +  ILK
Sbjct: 276 K--VEILIHIHNDVSPDKTIDALYAFTDCQVTISPNACVIVGDKPMFMNVSEILK 328


>gi|4240541|gb|AAD13612.1| DNA gyrase A [Acinetobacter baumannii]
 gi|28629426|gb|AAO32076.1| DNA gyrase [Acinetobacter genomosp. 3]
 gi|28629430|gb|AAO32078.1| DNA gyrase [Acinetobacter genomosp. 13]
          Length = 115

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 91/115 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|328947272|ref|YP_004364609.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
 gi|328447596|gb|AEB13312.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
          Length = 659

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 174/348 (50%), Gaps = 42/348 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +    +++ YA  VI  RAIPDL DGLKPV RRI+  +  +    + +  K A + G+
Sbjct: 4   IKNLFDKNFIEYASYVIRDRAIPDLEDGLKPVQRRIMHTLFNID---DGRMHKVASVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M K+HPHG+A+I  AL  +A     + + I+ QGNFG++  GD  +A RY EC +   A
Sbjct: 61  CM-KFHPHGDASIGAALVVLAN----KEIFIQRQGNFGNLYTGDTASASRYIECCVHPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     +  ++ P+YDG  +EPV   A+ P VL+ G  GIAVGM+T I  +N+ EV 
Sbjct: 116 KKFL--YNPNITEYVPSYDGRSKEPVAFRAKIPVVLLGGAEGIAVGMSTKILPYNIKEV- 172

Query: 200 DGCVAVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
                        LDA ++ +RG      PD PTG    G   + N Y  G G I+ R  
Sbjct: 173 -------------LDAEIKALRGEPFEIYPDSPTG----GLMDVSN-YNDGNGKIITRAK 214

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +     D ++IV+TE+P +     +L+ I    +  +I  I+ + D +      + I+
Sbjct: 215 FDL----SDEKKIVITELPLETTSKDLLDSIDAAYKAGKI-KISSVEDFTTDHC-NIEIK 268

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           L RG  +  +   LY YTS +   +  M+ +    P   T   I+K +
Sbjct: 269 LPRGVYSKDVEKALYAYTSCEKSIACQMLVIKDNMPVAMTATEIIKYY 316


>gi|218677660|ref|ZP_03525557.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 105

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/105 (66%), Positives = 86/105 (81%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WS
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQPWS 105


>gi|47420002|gb|AAT27353.1| DNA gyrase A [Campylobacter fetus]
          Length = 239

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/266 (38%), Positives = 158/266 (59%), Gaps = 28/266 (10%)

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT + L KAR RA
Sbjct: 1   NNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQKARARA 60

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+D V+ +I+ S +  +AR  LM +                        
Sbjct: 61  HILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK------------------------ 96

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSSRSRLLGIIKQ 503
               LSE+Q+ AIL++RL++LTGL R+ +  EL  + +E+ E LD IL S + +  II+ 
Sbjct: 97  --FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI-LELIEKLDAILKSETLIENIIRD 153

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGG
Sbjct: 154 ELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGG 213

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSV 589
           KG+  V   D+DF+   F   +H ++
Sbjct: 214 KGKVAVTTYDDDFIESFFTCMSHDTL 239


>gi|15834656|ref|NP_296415.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270284821|ref|ZP_06194215.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270288850|ref|ZP_06195152.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Weiss]
 gi|301336201|ref|ZP_07224403.1| DNA topoisomerase IV subunit A [Chlamydia muridarum MopnTet14]
 gi|7190071|gb|AAF38922.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 490

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 176/341 (51%), Gaps = 30/341 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I+D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NISDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    L         PDF +G  +       + Y  G GSIV+R    I  
Sbjct: 173 LKAQIAILNDQPFSL--------FPDFASGGSMDA-----SDYQDGLGSIVLRATIDI-- 217

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              + + +++ EI        ++  I E   ++ I+ I  ++D S    + + I+L +G 
Sbjct: 218 --VNDKTLLIKEICPSTTTETLIRSI-ENAAKRGIIKIDSIQDFSTDLPH-IEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            A  +L  LY +T  Q + +    A+   KP   ++  IL+
Sbjct: 274 HAKDLLQPLYAHTECQVVLTSRPTAIYQGKPWETSVSEILR 314


>gi|260062970|ref|YP_003196050.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
 gi|88784538|gb|EAR15708.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
          Length = 907

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 194/381 (50%), Gaps = 30/381 (7%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +  E E++ +T V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +M   
Sbjct: 11  NQQEAEQEALTRV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMD-- 66

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G+ M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 67  -DGRYNKVANVVGQTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  ++        +++ +YDG  +EPV L  ++P +L  G  GIAVG
Sbjct: 121 AASRYIEARLSKFALEVV--FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVG 178

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++T I  HN  E++D  +  +      L         PDFPT  +I     I N Y  G 
Sbjct: 179 LSTKILPHNFIELIDASIKHLQGKRFKL--------YPDFPTAGII----DIGN-YNDGE 225

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I +   D+  +V++EIPY  N +++++ I  L    +        +++  
Sbjct: 226 RGGKVRVRARIAQQ--DKNTLVISEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTA 281

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               +++ L  G S D  ++ LY +T+ ++  S     +   KP    +  +L+      
Sbjct: 282 AEVEILVHLPSGISPDKTIDALYAFTACETSISPLGCIIEDNKPVFMGVSEMLRRSTDHT 341

Query: 366 EEVVVRRTKYLLNKARDRAHV 386
            E++    + LL + +++ H 
Sbjct: 342 VELLQAELEILLGELQEQWHA 362


>gi|120435835|ref|YP_861521.1| DNA topoisomerase IV subunit A [Gramella forsetii KT0803]
 gi|117577985|emb|CAL66454.1| topoisomerase IV subunit A [Gramella forsetii KT0803]
          Length = 880

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 175/344 (50%), Gaps = 28/344 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + DE+ E     + +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  +   
Sbjct: 8   AQDEQFESKEELIKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD-- 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + +LI+ QGN+G++  GD  
Sbjct: 66  -DGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDILIDTQGNWGNILTGDRA 119

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        +++ +YDG  QEPV L  ++P +L  G  GIAVG
Sbjct: 120 AAPRYIEARLSKFALEVL--YSPKLTEWQLSYDGRKQEPVNLPVKFPMLLAQGAEGIAVG 177

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++T    HN  E++D  +  +      +         PDFPTG +      + N Y+ G+
Sbjct: 178 LSTRFLPHNFNELIDASILHLKGKTFKI--------FPDFPTGGI----ADVSN-YSDGK 224

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I +   D+  +V+ EIPY  N +++++ I  L    +        +++  
Sbjct: 225 RGGRVRIRAKINQL--DKNTLVINEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTA 280

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
               ++I L    S D  ++ LY +T  ++  +     +  +KP
Sbjct: 281 AEVEILIHLPNNMSPDRTIDALYAFTQCENSLAPLGCVIIDHKP 324


>gi|296253494|gb|ADH04208.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 102/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVHRRLIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|269148302|gb|ACZ28522.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 115

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHR +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRSVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|261414926|ref|YP_003248609.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371382|gb|ACX74127.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325658|gb|ADL24859.1| putative DNA topoisomerase IV, A subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 846

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 179/347 (51%), Gaps = 29/347 (8%)

Query: 15  GITSVSITDEMQNS-YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           G+++V+  + + +  +L YA  VIL RA+P   DGLKPV RRIL  M +     + +Y K
Sbjct: 11  GLSNVNHLERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTE 132
            A I G  M  YHPHG+A+I DAL  + Q    + LLI+ QGN+G+   GD  AA RY E
Sbjct: 68  VATIVGRTMA-YHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  ++     +T ++ P+YDG  +EPV L  ++P +L  G  GIAVG++T+I  
Sbjct: 123 GRLTPFAVDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILP 180

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN  E+ +  +A +      L         PDF TG +I       + Y  G+    ++ 
Sbjct: 181 HNFRELCEASIACLRGKKFTL--------YPDFFTGGII-----DVSDYNDGQRGGKVKV 227

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK   D + + + EIPY     +++E I +   +K  + I  + D++  QG  +++
Sbjct: 228 RAKIEKV--DNKTLAIREIPYGTTTVSLIESIVK-ANDKGKIKIKHV-DDNTSQGVEILV 283

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            L+ G    V ++ LY +T  +   S     +    P+   +  ILK
Sbjct: 284 HLQPGTDPQVAIDALYAFTDCEKSLSPCTCVIIDKHPKFVGVSDILK 330


>gi|296253496|gb|ADH04209.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/140 (53%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y A+  MAQ +S R  L
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|89898786|ref|YP_515896.1| DNA topoisomerase IV subunit A [Chlamydophila felis Fe/C-56]
 gi|89332158|dbj|BAE81751.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 479

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 180/340 (52%), Gaps = 30/340 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   VSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E++
Sbjct: 116 KDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYELI 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +A+++N    L         PDF +G V+       + Y  G GSI IR    I   
Sbjct: 174 EAQIAILNNRTFTL--------LPDFYSGGVMDA-----SEYQDGLGSITIRASIQI--- 217

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +++ EI        ++  I E   ++ ++ I  ++D S  Q + + I+L +G  
Sbjct: 218 -VDSKTLIIKEICPSTTTETLIRSI-ENAAKRGVIKIDSIQDFSTDQPH-IEIKLPKGIY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           A  IL  L++YT  Q + +    A+   KP   ++  ILK
Sbjct: 275 AKDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEILK 314


>gi|309049|gb|AAC36878.1| DNA gyrase A subunit [Mycobacterium tuberculosis H37Rv]
 gi|740009|prf||2004291A DNA gyrase:SUBUNIT=A
          Length = 107

 Score =  158 bits (399), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 83/107 (77%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +
Sbjct: 1   GKYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEM 60

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 61  LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 107


>gi|47059210|gb|AAT09328.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 90/115 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|28629428|gb|AAO32077.1| DNA gyrase [Acinetobacter calcoaceticus]
          Length = 115

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMA 115


>gi|30841942|gb|AAP34703.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|30841950|gb|AAP34704.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 115

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF   YDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDTYDG 115


>gi|319955665|ref|YP_004166932.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319424325|gb|ADV51434.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 886

 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 34/333 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++    + +Y K A + G 
Sbjct: 31  VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKELD---DGRYNKVANVVGH 87

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 88  TM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDSAAASRYIEARLSKFA 142

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++         ++ +YDG  +EP  L  ++P +L  G  GIAVG++T +  HN  E++
Sbjct: 143 LEVV--FSPKITAWQSSYDGRKKEPTNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFIELI 200

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG--RGSIVIRG-VSHI 256
           D  +  +      +         PDFPT  +I     + N Y  G   G I +R  +S +
Sbjct: 201 DSSIKHLKGQKFTI--------FPDFPTSGII----DVSN-YNDGIRGGKIRVRAKISQL 247

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +K++     +V+ EIPY  N +++++ I +   EK  + +  + D +      ++I L  
Sbjct: 248 DKST-----LVINEIPYGTNTSSLIDSILK-ANEKGKIRVRKIEDNT-AADVEILIHLPS 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           G S D  ++ LY +T+ +S  S     +   KP
Sbjct: 301 GLSPDKTIDALYAFTACESSISPLGCIIEDNKP 333


>gi|269148358|gb|ACZ28550.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  157 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDG KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGPKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|295134566|ref|YP_003585242.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
 gi|294982581|gb|ADF53046.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
          Length = 873

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 186/369 (50%), Gaps = 34/369 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  +    + +Y K A I G 
Sbjct: 23  VTGMYKDWFLDYASYVILERAVPAMEDGFKPVQRRIMHSMKDLD---DGRYNKVANIVGH 79

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 80  TM-QYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 134

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L        +++ +YDG  +EPV L  ++P +L  GG GIAVG++T +  HN  E++
Sbjct: 135 LEVL--YNPKLTEWQLSYDGRKKEPVNLPVKFPMLLAQGGEGIAVGLSTRLLPHNFNELI 192

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRG-VSHI 256
           D  +  +      L         PDFPTG +        + Y  G+  G + +R  +S +
Sbjct: 193 DASIKHLQGKRFKL--------FPDFPTGGI-----ADISHYNDGKRGGRVRVRAKISQL 239

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +K +     +V+TEIP+     ++++ +  L   ++        +++      + I L  
Sbjct: 240 DKNT-----LVITEIPFGTTTTSLIDSV--LKANEKGKIKIKKIEDNTAAEVEIQIHLPN 292

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S D  ++ LY +T  ++  S     +   KPE   +  IL++       ++ R  +  
Sbjct: 293 NISPDRTIDALYAFTQCENSLSPLGCVIVDNKPEFLGVSDILRSSTDHTLHLLKRELEIT 352

Query: 377 LNKARDRAH 385
           L++  ++ H
Sbjct: 353 LDELEEQWH 361


>gi|163784169|ref|ZP_02179106.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880566|gb|EDP74133.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 331

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 91/115 (79%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    I +E++++YL YA++VI+GRAIPD+RDGLKPV RRIL+ M +  +  N+ Y K A
Sbjct: 4   IIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           R  G V+ KYHPHG++++YDAL RMAQD++LR  L++GQGNFGS+DGDPPAA RY
Sbjct: 64  RTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRY 118


>gi|94270066|ref|ZP_01291646.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93450953|gb|EAT01942.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 662

 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 172/335 (51%), Gaps = 34/335 (10%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           ++L Y   VI  RAIPDL DGLKPV RRIL  +  M    + ++ K A + GE M K HP
Sbjct: 16  NFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHKVANVVGETM-KLHP 71

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-GDPPAAERYTECRLQKAAHFLLDDL 146
           HG+A+I+ AL  +A     +  LI+ QGNFG+V  GD  +A RY ECRL   A   +   
Sbjct: 72  HGDASIFSALVNLAN----KGYLIDRQGNFGNVHTGDGASAPRYIECRLSPLARETM--F 125

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+  +F  +YDG  +EPV L AR P +L+ G  GIAVGMAT I  HN GE++     ++
Sbjct: 126 NKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGELLTASKQIL 185

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
                +L         PDFP G ++       + Y  G G +  R  + IE  + D + I
Sbjct: 186 REEPFEL--------FPDFPQGGLLDA-----SGYEDGNGRLRCR--ARIE--TRDDKTI 228

Query: 267 VVTEIPYQVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           V+ +IPY     +++E + +  R  + +I+ I D   E       + I+L RG  A+  +
Sbjct: 229 VIRDIPYGTTTQSLIESVEKAARAGKFKILSIDDYTAED----VEIEIKLARGFKAEETI 284

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             LY +T  +   S N   +    P   T+  +L+
Sbjct: 285 KALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLR 319


>gi|321268258|gb|ADW78937.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268260|gb|ADW78938.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 115

 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 90/115 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 115


>gi|296253498|gb|ADH04210.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 75/140 (53%), Positives = 102/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|225164319|ref|ZP_03726587.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801081|gb|EEG19409.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 732

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 170/336 (50%), Gaps = 38/336 (11%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +I +  E  K   +  +    +N +L YA  VIL RA+P + DGLKPV RRIL  +    
Sbjct: 64  VIPAAPEPPKNNDNAPLAHAYKNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTL---- 119

Query: 65  VEWNK---KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SV 120
             W K   ++ K A I G  M  YHPHG+A+I  AL  +AQ    R  LIE QGNFG ++
Sbjct: 120 --WEKDDGRFHKVANIVGATMA-YHPHGDASIGAALVAIAQ----RGWLIEPQGNFGNAL 172

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL   A  +L      T  ++ +YDG  +EPV L A++P  L+ G  
Sbjct: 173 TGDDAAAPRYIEARLTPFAREVL--FNPKTTPWQLSYDGRAKEPVTLPAKFPVSLLEGAD 230

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+AT I  HN  ++   C A I++ +        I+  PDF +G +        + 
Sbjct: 231 GIAVGLATKILPHNFNDL---CRAAINHLN---GKKFRIV--PDFASGGI-----ADFSE 277

Query: 241 YATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y  G   G I IR    I      +  + +TE+PY     +++E I      K  + I  
Sbjct: 278 YNDGERGGKIKIRAKIEIRS----KYLLAITELPYGATTVSLIESIVS-ANNKGKIKIRH 332

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           + D +  Q   +++ L +G+ A+ ++NQLY +T  Q
Sbjct: 333 VDDNTADQ-VEILVHLPQGSDAEQVINQLYVFTDCQ 367


>gi|94264176|ref|ZP_01287973.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93455434|gb|EAT05632.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 711

 Score =  157 bits (396), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 173/339 (51%), Gaps = 34/339 (10%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           ++L Y   VI  RAIPDL DGLKPV RRIL  +  M    + ++ K A + GE M K HP
Sbjct: 65  NFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHKVANVVGETM-KLHP 120

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-GDPPAAERYTECRLQKAAHFLLDDL 146
           HG+A+I+ AL  +A     +  LI+ QGNFG+V  GD  +A RY ECRL   A   +   
Sbjct: 121 HGDASIFSALVNLAN----KGYLIDRQGNFGNVHTGDGASAPRYIECRLSPLARETM--F 174

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+  +F  +YDG  +EPV L AR P +L+ G  GIAVGMAT I  HN GE++     ++
Sbjct: 175 NKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGELLTASKQIL 234

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
                +L         PDFP G ++       + Y  G G +  R  + IE  + D + I
Sbjct: 235 REEPFEL--------FPDFPQGGLLDA-----SGYEDGNGRLRCR--ARIE--TRDDKTI 277

Query: 267 VVTEIPYQVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           V+ +IPY     +++E + +  R  + +I+ I D   E       + I+L RG  A+  +
Sbjct: 278 VIRDIPYGTTTQSLIESVEKAARAGKFKILSIDDYTAED----VEIEIKLARGFKAEETI 333

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
             LY +T  +   S N   +    P   T+  +L+   A
Sbjct: 334 KALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENTA 372


>gi|187734641|ref|YP_001876753.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424693|gb|ACD03972.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 697

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 168/332 (50%), Gaps = 27/332 (8%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +L YA  VIL RA+P + DG KPV RRIL  M ++    + +Y K A I G+ M K+HPH
Sbjct: 6   FLDYASYVILERAVPKINDGFKPVQRRILHAMDRLD---DGRYNKVANIVGDTM-KFHPH 61

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLG 147
           G+ +I DAL  + Q    + LLI+ QGN+G++  GDP AA RY E R    A  ++    
Sbjct: 62  GDRSIADALVGLGQ----KGLLIDTQGNWGNILTGDPAAASRYIEARFTSFARDVV--FS 115

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
               +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+++  +A + 
Sbjct: 116 PKVTEWQLSYDGRNKEPVSLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELIEASIAYLR 175

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
                L         PDFPTG V+           TGR  I  R ++  +K       + 
Sbjct: 176 GQPFQL--------LPDFPTGGVMDATNYRDGERGTGRVRIRARILTESKKL------LR 221

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +TEIP+ V    +++ I     EK  + IA + D +  Q   +++ L  GA  +     L
Sbjct: 222 ITEIPFGVTTEILIDSIVSAA-EKGKIKIARIEDNT-AQHVDILVHLPAGADPEQTRKAL 279

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + +++ +   S N   +   KP    +  IL+
Sbjct: 280 FAFSACEVSISPNACVIVEEKPRFMCVSDILR 311


>gi|182411928|ref|YP_001816994.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
 gi|177839142|gb|ACB73394.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
          Length = 708

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 173/337 (51%), Gaps = 32/337 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + ++ K A I G  M ++
Sbjct: 71  RNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEME---DGRFHKLANIVGATM-RF 126

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I  AL  + Q    R  L+E QGNFG++  GD  AA RY E RL   A  +L 
Sbjct: 127 HPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARLTAFAKDVL- 181

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  ++ +YDG  +EPV L A++P VL+ G  GIAVG+AT I  HN  ++   C A
Sbjct: 182 -FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNFNDL---CRA 237

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            I++    L      I  PDFPTG V        + Y  G   G + IR    I      
Sbjct: 238 AINH----LQGKTFRIY-PDFPTGGV-----ADFSEYNDGERGGKVKIRAKIEIR----S 283

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +  + +TE+P+     +++E I      K  + I  + D++      +++ L +G+  + 
Sbjct: 284 KYLLAITELPFGSTTESLIESIL-AANAKGKIKIRHV-DDNTADAVEILVHLPQGSDPEK 341

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           ++ QLY +T+ Q+  S     +   KP    +  ILK
Sbjct: 342 LIQQLYVFTACQTNLSPAACVIEDDKPHFLGVREILK 378


>gi|2588920|dbj|BAA23211.1| GyrA subunit [Klebsiella pneumoniae]
          Length = 109

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 88/109 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 109


>gi|29839794|ref|NP_828900.1| DNA topoisomerase IV subunit A [Chlamydophila caviae GPIC]
 gi|29834141|gb|AAP04778.1| topoisomerase, subunit A, putative [Chlamydophila caviae GPIC]
          Length = 479

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 181/341 (53%), Gaps = 30/341 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +++D  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLAN----KGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +AV++N    L         PDF +G V+       + Y  G GSI +R    I  
Sbjct: 173 IAAQIAVLNNRAFTL--------LPDFYSGGVMDA-----SEYQDGLGSITMRASIQI-- 217

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D++ +++ EI        ++  I E   ++ ++ I  ++D S  Q + + I+L +G 
Sbjct: 218 --ADQKTLIIKEICPSTTTETLIRSI-ENAAKRGVIKIDSIQDFSTDQPH-IEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            A  IL  L+++T  Q + +    A+   KP   T+  IL+
Sbjct: 274 YAKDILETLFQHTECQVVLTSKPTAIYNNKPVETTISEILR 314


>gi|332043817|gb|EGI80012.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
          Length = 907

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 174/344 (50%), Gaps = 34/344 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +E   T   IT   +  +L YA  VIL RA+P + DG KPV RRI+  M  +    + 
Sbjct: 15  ENQEPQETITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DG 71

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA 
Sbjct: 72  RYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAAS 126

Query: 129 RYTECRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           RY E R+ K   F LD +    + +++ +YDG  +EPV L   +P +L  GG GIAVG++
Sbjct: 127 RYIEARISK---FGLDVVYNPKITEWQQSYDGRRKEPVNLPVMFPLLLAQGGEGIAVGLS 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T I  HN  E+++  +  +      L         PDFPT  +        N     RG 
Sbjct: 184 TKILPHNFIELIEASIKHLQGKRFTL--------VPDFPTAGI----ADFSNYNDGLRGG 231

Query: 248 IV-IRG-VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            V +R  +S ++KT+     + +TEIPY    +++++ I  L    +        +++  
Sbjct: 232 KVRVRAKISQVDKTT-----LAITEIPYGTTTSSLIDSI--LKANDKGKIKIKKIEDNTA 284

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
               ++I L  G S D  ++ LY +TS +S  S     +   KP
Sbjct: 285 AEVEILIHLPSGLSPDKTIDALYAFTSCESSISPLGCVIEDNKP 328


>gi|327406037|ref|YP_004346875.1| DNA topoisomerase [Fluviicola taffensis DSM 16823]
 gi|327321545|gb|AEA46037.1| DNA topoisomerase (ATP-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 911

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 167/335 (49%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P L DG KPV RRIL  M ++    + +Y K A + G  M KY
Sbjct: 51  ENWFLDYASYVILERAVPSLHDGFKPVQRRILHSMKELD---DGRYNKVANVIGNTM-KY 106

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G ++ GD  AA RY E RL K A  ++ 
Sbjct: 107 HPHGDASIGDALVQLGQ----KELLIDCQGNWGNTLTGDGAAAPRYIEARLSKFASHVV- 161

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  +  +YDG  +EP  L  ++P +L  G  GIAVGMA  I  HN  E++D  + 
Sbjct: 162 -FNPKTTSWLLSYDGRNKEPDNLPVKFPILLAQGAEGIAVGMACKILPHNFIELIDQSIN 220

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +    I++         PDF  G    G     N Y  G     +R  + I+K   D +
Sbjct: 221 HLRGKKIEI--------FPDFLNG----GMADFTN-YNDGLRGGKVRVRAKIKKV--DNK 265

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +++ EIP+     +++E +  +    +        +++      +VI L  G S D  +
Sbjct: 266 TLIINEIPFGCTTTSLIESV--IKANDKGKIKIKKIEDNTAADAEIVIHLAPGVSPDKTI 323

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   ++G  P    +  ILK
Sbjct: 324 DALYAFTDCEVSISPNASVIDGDTPRFMGVTEILK 358


>gi|2191123|gb|AAB61012.1| DNA gyrase A [Staphylococcus haemolyticus]
          Length = 132

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 98/132 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +++IYDA+ RM Q +S R  L++GQGNFGS+DGD  AA RYTE ++ K    LL D+ KD
Sbjct: 1   DSSIYDAMVRMEQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL EV++G + +  NP
Sbjct: 61  TIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLHLSKNP 120

Query: 210 DIDLDALMEIIR 221
           D+ +  LME I+
Sbjct: 121 DVTIAELMEDIQ 132


>gi|319827182|gb|ADV74809.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 94/117 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|296253502|gb|ADH04212.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 100/140 (71%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|313887294|ref|ZP_07820985.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923213|gb|EFR34031.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176347|gb|AEE12037.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 875

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 227/474 (47%), Gaps = 65/474 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  ++ +E+E +G    ++    ++ +L YA  VIL RA+P + DGLKPV RR+L+ M  
Sbjct: 34  EGYVAPEEDEGEGHLH-TLGGMYRHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMHL 92

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           M    N    K A+I G  M  YHPHG+A+I DAL ++ Q    +  LI+ QGN+G++  
Sbjct: 93  ME---NGTLHKVAKIVGATMA-YHPHGDASINDALVQLGQ----KGYLIDTQGNWGNILT 144

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E +L   A  +L   G     +  +YDG  +EPV L AR+P +L  G  G
Sbjct: 145 GDEAAAGRYIEAKLSNFALEIL--FGDKITPWMKSYDGKSREPVYLPARFPLLLAQGAEG 202

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++  I  HN  E+++   A +      L         PDFPTG +I       + Y
Sbjct: 203 IAVGLSCKILPHNPKELIEAACAYLRGEPFTL--------YPDFPTGGII-----DVDRY 249

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE-----LVREKRIVDI 296
             G+    ++  + IE+   DR  + V ++P+    + +++ I +     L++ KRI D+
Sbjct: 250 NDGKRGGQVKSRARIERIE-DR-VLSVRDLPFGKTTSTLIDSILKANDKGLIKIKRIDDM 307

Query: 297 ----ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
               AD+R           I L  G SAD  ++ LY +T  +   S N   +   KP   
Sbjct: 308 TAETADIR-----------IYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKPRFL 356

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +  +L+  V    E++    +  L+   DR    +G ++    ++   RI +  P  E 
Sbjct: 357 GVSDLLRHSVKHTRELLQEDLRLQLH---DRQEEYMGASLERLFIEH--RIYKLRPFEE- 410

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARL 465
                      A D +  +D+I  +   I  D  +  +++     +LE+++AR+
Sbjct: 411 -----------APDQQTALDVIRKALEPIVGDSLLRPITDDDLARLLEIKMARI 453


>gi|319827180|gb|ADV74808.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827184|gb|ADV74810.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827186|gb|ADV74811.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 93/117 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|28193541|emb|CAD56003.1| DNA gyrase [Proteus mirabilis]
          Length = 115

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 89/115 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L+
Sbjct: 1   VHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           +GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVDF PNYDG+   P V
Sbjct: 61  DGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAV 115


>gi|163756899|ref|ZP_02164007.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
 gi|161323135|gb|EDP94476.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
          Length = 880

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 169/326 (51%), Gaps = 34/326 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T   +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  +    + +Y K A 
Sbjct: 22  TITKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DGRYNKVAN 78

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL
Sbjct: 79  IVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARL 133

Query: 136 QKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K   F LD +    + D++ +YDG   EPV L  ++P +L  G  GIAVG++T I  HN
Sbjct: 134 SK---FALDVVYSPKITDWQLSYDGRKNEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV-IRG- 252
             E++D  +  +      +         PDFPT  ++     + N     RG  V +R  
Sbjct: 191 FIELIDASIKHLQGKRFQI--------YPDFPTSGIM----DVSNYNDGLRGGKVRVRAK 238

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +S ++K +     +V+TEIP+  N  +++E I  L    +        +++      +++
Sbjct: 239 ISQLDKNT-----LVITEIPFGTNTTSLIESI--LKANDKGKIKIKKIEDNTAADVEILV 291

Query: 313 ELKRGASADVILNQLYRYTSLQSLFS 338
            L    S D  ++ LY +T+ +S  S
Sbjct: 292 HLPNNISPDKTIDALYAFTNCESSIS 317


>gi|82502210|gb|ABB80133.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 90/115 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA  YTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMCYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|51246133|ref|YP_066017.1| DNA topoisomerase IV subunit A [Desulfotalea psychrophila LSv54]
 gi|50877170|emb|CAG37010.1| probable topoisomerase IV, subunit A [Desulfotalea psychrophila
           LSv54]
          Length = 663

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 168/328 (51%), Gaps = 34/328 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
            + ++L Y   VI  RAIP + DGLKPV RRIL  +  M    + ++ K A + GE M K
Sbjct: 12  FEYNFLEYTSYVIRERAIPAIDDGLKPVQRRILQTLFNM---EDGRFHKVANLVGETM-K 67

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
            HPHG+A+I+ AL  +A     +  LIE QGNFG++  GD  +A RY ECRL   A  +L
Sbjct: 68  LHPHGDASIFSALVNLAN----KGFLIERQGNFGNIFTGDSASAPRYIECRLSPLAKEVL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
               KD  +F  +YDG   EPV L A+ P +L+ G  GIAVGMAT I  HN  E++    
Sbjct: 124 --FNKDITEFIDSYDGRMVEPVTLPAKLPLLLLQGAEGIAVGMATKIMPHNFCELLQAQK 181

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           AV+ + +  L         PDFP G ++       + Y  G G I  R  + I +   + 
Sbjct: 182 AVLLDEEFTL--------YPDFPQGGLV-----DVSGYEDGNGKIKCR--ARIREL--NE 224

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK--RGASAD 321
           + I++ EIPY     ++ + I +  +  +I  I+     +D    +V IE+K  RG  A 
Sbjct: 225 KTIIIDEIPYSTTTQSLTDSIEKAAKAGKIKIISI----NDYTAEKVEIEIKVARGIYAK 280

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKP 349
             +  LY +T  +   S N+  + G  P
Sbjct: 281 DTIKALYAFTDCEVPISPNLTLIKGKTP 308


>gi|255535416|ref|YP_003095787.1| DNA topoisomerase IV subunit A [Flavobacteriaceae bacterium
           3519-10]
 gi|255341612|gb|ACU07725.1| Topoisomerase IV subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 868

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 171/335 (51%), Gaps = 28/335 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++ +L YA  VIL RAIP + DG KPV RRI+  M ++    + +Y K A + G  M KY
Sbjct: 21  KDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMRELE---DGRYNKVANLVGNTM-KY 76

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL   A  ++ 
Sbjct: 77  HPHGDASITDAMVQIGQ----KELLIDMQGNWGNIYTGDSAAAARYIEARLTPFALEVV- 131

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  +  +YDG   EP+ L  ++P +L +G  GI VG++T I  HN  E+++  +A
Sbjct: 132 -FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLASGVEGIGVGLSTKIMPHNFNELINASIA 190

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            + N   +L         PDF TG    G   + N     RG  +      I+K   ++ 
Sbjct: 191 HLKNKSFEL--------YPDFLTG----GMLDVSNYNDGERGGRIRTRARIIQK---EKN 235

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + +TE+P+  N   +++ I +   + +I       + SD+    + I L    S D  +
Sbjct: 236 TLCITELPFGKNTGDLIDSIIKANEKGKIKIKKIEDNTSDK--VEINIHLNSDVSPDKTI 293

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + LY +T  +   S N   + G +PE  T+  IL+
Sbjct: 294 DALYAFTDCEIPISPNACVIVGNRPEFLTVSEILR 328


>gi|296253492|gb|ADH04207.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253500|gb|ADH04211.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253504|gb|ADH04213.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|150024744|ref|YP_001295570.1| DNA topoisomerase IV subunit A [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771285|emb|CAL42754.1| Topoisomerase IV subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 906

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 173/334 (51%), Gaps = 30/334 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 46  QHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  G
Sbjct: 156 GDSAAASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T +  HN  E++D  + ++      +         PDF T  +      + N Y
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKILKGKPFTI--------YPDFQTAGI----ADVSN-Y 260

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     +R  + I +   D++ +V+T+IP+  N + +++ I  L   ++        +
Sbjct: 261 NDGLRGGRVRVRAKISQL--DKQTLVITQIPFSTNTSTLIDSI--LKANEKGKIKIKKIE 316

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           ++      ++I L  G S D  ++ LY +T+ ++
Sbjct: 317 DNTAAEVEILIHLFPGVSPDKSIDALYAFTACET 350


>gi|196230801|ref|ZP_03129662.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196225142|gb|EDY19651.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 745

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 163/310 (52%), Gaps = 28/310 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RR+L  +  M    + ++ K A + G  M K 
Sbjct: 77  RNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMD---DGRFHKVANVVGATM-KL 132

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I  AL  + Q    R  LIE QGN+G ++ GD  AA RY E RL   A  +L 
Sbjct: 133 HPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARLTPFARDVL- 187

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  ++ +YDG  +EPV L A++P VL+ G  GIAVG++T I  HN     D C A
Sbjct: 188 -FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNFN---DLCRA 243

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I++       ++     PDFPTG      TG    Y  G     ++  + IE+ S  + 
Sbjct: 244 AINHLQGKTFRIL-----PDFPTGG-----TGDFTDYNDGERGGKVKVRARIEEHS--KS 291

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + +TE+PY V   +++E I      K  + I  + D++      +++ L  G+  D ++
Sbjct: 292 VLCITELPYGVTTESLIESIL-AANAKGKIKIKHV-DDNTASKVEILVHLPPGSQPDKVV 349

Query: 325 NQLYRYTSLQ 334
            QLY +TS Q
Sbjct: 350 QQLYVFTSCQ 359


>gi|313205728|ref|YP_004044905.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312445044|gb|ADQ81399.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|315022876|gb|EFT35900.1| DNA topoisomerase IV subunit A [Riemerella anatipestifer RA-YM]
 gi|325336831|gb|ADZ13105.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 857

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 178/352 (50%), Gaps = 28/352 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+ +KG T   ++   ++ +L YA  VIL RAIP + DG KPV RRI+  M ++    +
Sbjct: 2   EEQYQKGETLKKVSRLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMKELE---D 58

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
            +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G+V  GD  AA
Sbjct: 59  GRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNVYTGDSAAA 113

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY E RL   A  ++      T  +  +YDG   EP+ L  ++P +L  G  GI VG++
Sbjct: 114 ARYIEARLTPFALEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGLS 171

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T +  HN  E+++  +A +      L         PDF TG    G   + N Y  G   
Sbjct: 172 TKVMPHNFNELIEASIAYLKGKKFQL--------YPDFMTG----GMLDVSN-YNDGERG 218

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R  + I     D+  + +TE+P+    + +++ I +   EK  + I  + D +  Q 
Sbjct: 219 GRLRARARI--IQKDKHTLCITELPFSKTTSDLIDSIIK-ANEKGKIKIKKIEDNTSDQ- 274

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             + I L    S D +++ LY +T  +   S N   + G KP   ++  ILK
Sbjct: 275 VEINIHLNNDVSPDKMIDALYAFTDCEISISPNACVIVGDKPMFLSVSEILK 326


>gi|311746903|ref|ZP_07720688.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
 gi|126578592|gb|EAZ82756.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
          Length = 872

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 174/339 (51%), Gaps = 40/339 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V ++   ++ +L YA  VIL RA+P + DGLKPV RRI+  M +M    + ++ K A I
Sbjct: 18  TVPVSGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRIMHAMKEMD---DGRFNKVANI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQ 136
            G+ M +YHPHG+A+I DA+  + Q    + LLIE QGN+G +  GD  AA RY E RL 
Sbjct: 75  IGQSM-QYHPHGDASIGDAIVNLGQ----KDLLIETQGNWGDIRTGDRAAAARYIEARLS 129

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  ++      T +++ +YDG  +EP+ L  ++P +L  G  GIAVG++T I  HN  
Sbjct: 130 KFALEVV--FNPQTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFC 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIKNAYATGRGSIVI 250
           E+++G +              EI++G      PDF TG +        + Y  G+    +
Sbjct: 188 ELIEGSI--------------EILKGNKTNVLPDFLTGGL-----ADFSEYNGGQRGGKV 228

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +  + IE+   D + I++ EIP+     ++++ I  L    +         ++  +   +
Sbjct: 229 KVRAKIEEE--DSKTILIKEIPFGTTTDSLIDSI--LKANDKGKIKIKKVVDNTAKDVEI 284

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
            + L  G S DV ++ LY +T  +   S N   +   KP
Sbjct: 285 AVHLAPGISPDVTIDALYAFTDCEVSISPNACVIIDEKP 323


>gi|86130200|ref|ZP_01048800.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
 gi|85818875|gb|EAQ40034.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
          Length = 893

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 179/351 (50%), Gaps = 30/351 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           +   ++SS   E  G T   ++   ++ +L YA  VIL RA+P + DG KPV RRI+  +
Sbjct: 14  LNSDMLSSQTGEGSGETITRVSGMFEDWFLDYASYVILERAVPAIEDGFKPVQRRIMHAL 73

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 74  KELD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGNI 125

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNG 178
             GD  AA RY E RL K   F LD +    + D++ +YDG  +EP+ L   +P +L  G
Sbjct: 126 LTGDRAAASRYIEARLSK---FALDVVYNPKITDWQASYDGRKKEPINLPVMFPLLLAQG 182

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T +  HN  E++D  +  +      +         PDFPT A I   T  K
Sbjct: 183 AEGIAVGLSTKVMPHNFIELIDASIKHLKGKRFTI--------YPDFPT-AGIADFTDYK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +    G+    IR  + + +   D+  +V+TE+P+     ++++ I  L    +      
Sbjct: 234 DGLRGGK----IRCRARMSQQ--DKNTLVITELPFGQTTTSLIDSI--LKANDKGKIKIK 285

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
             +++      +++ L  G S D  ++ LY +T+ ++  S     +   KP
Sbjct: 286 KIEDNTSANVEILVHLPSGISPDKTIDALYAFTNCETSISPLGCVIEDNKP 336


>gi|332171254|gb|AEE20509.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 895

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 184/364 (50%), Gaps = 43/364 (11%)

Query: 1   MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47
           M+E I   +E+EE              G T   ++   ++ +L YA  VIL RA+P + D
Sbjct: 1   MSEEINDHNEDEELNPETLPAEVVDGGGETITRVSGMFEDWFLDYASYVILERAVPSIED 60

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           G KPV RRI+  + ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    +
Sbjct: 61  GFKPVQRRIMHALKELD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----K 112

Query: 108 LLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPV 165
            LLI+ QGN+G++  GD  AA RY E RL K   F LD +    + +++ +YDG  +EP+
Sbjct: 113 DLLIDTQGNWGNILTGDRAAASRYIEARLTK---FALDVVYNPKITEWQASYDGRKKEPI 169

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
            L   +P +L +G  GIAVG++T +  HN  E++D  +  + +    L         PDF
Sbjct: 170 NLPVMFPMLLASGAEGIAVGLSTKVLPHNFIELIDASIKHLKDKKFTL--------YPDF 221

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT A I   T  K+    G+    +R  + I  +  D+  +V+TE+P+     ++++ I 
Sbjct: 222 PT-AGIADFTDYKDGMRGGK----VRCRARI--SQQDKNTLVITELPFGQTTTSLIDSI- 273

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
            L    +        +++      +++ L  G S D  ++ LY +T+ ++  S     + 
Sbjct: 274 -LKANDKGKIKIKKIEDNTSANVEILVHLPGGISPDKTIDALYAFTNCETSISPLSCVIE 332

Query: 346 GYKP 349
             KP
Sbjct: 333 NNKP 336


>gi|289677158|ref|ZP_06498048.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 356

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 170/365 (46%), Gaps = 92/365 (25%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++DED++  L + ++HT++L FSS G VY  K + +P  S  ARG+ L+N+L L+ GE I
Sbjct: 4   IKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYI 63

Query: 631 TTIMPF----------------------PEDESSWNN--------------LYVVFATKH 654
           TT++P                        E+ S                   ++  +T +
Sbjct: 64  TTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTAN 123

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L  F +   SG IA++LD  D ++S      E +I+L +  G+  RF  S +R
Sbjct: 124 GTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVR 183

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRG+ L +G ++ISM                                    
Sbjct: 184 AM-GRTARGVRGMRLPEGQKLISML----------------------------------- 207

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                     I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A   ++
Sbjct: 208 ----------IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNE 249

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   A DE++V +
Sbjct: 250 RN--GRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEKLVGL 307

Query: 895 ERIRE 899
           ER++E
Sbjct: 308 ERVQE 312


>gi|330444050|ref|YP_004377036.1| DNA gyrase/topoisomerase IV subunit A [Chlamydophila pecorum E58]
 gi|328807160|gb|AEB41333.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pecorum E58]
          Length = 474

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 180/341 (52%), Gaps = 32/341 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   VSELFKTQFMHYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M  +HPHG+AAI +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-FHPHGDAAIIEALVVLAN----KGYLIETQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     D +  + +YDG  QEP  L ++ P +L++G  GIAVGM T I  HN  E++
Sbjct: 116 KETL--FNTDLMCMQDSYDGRDQEPKTLPSKLPLLLLHGVDGIAVGMMTKIFPHNFSELI 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              +A++ N    L         PDFP+GA++         Y  G GS+++R    I   
Sbjct: 174 QAQIALLKNRPFTL--------LPDFPSGALMDA-----TQYQDGLGSVLLRAKIQI--- 217

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +++ EI        ++  I E   ++ ++ I  ++D S    + + I+L RG  
Sbjct: 218 -LDDKTLLIQEICPSTTTETLIHSI-ENAAKRGVIKIDSIQDFSTDLPH-IEIKLPRGVH 274

Query: 320 ADVILNQLYRYTSLQ-SLFSVNMVALNGYKPERFTLIGILK 359
           A+ +L  L+ +T  Q  LFS    A++ + P   ++  ILK
Sbjct: 275 AEALLPALFEHTECQVELFS-RPTAIHHHSPIECSVSTILK 314


>gi|29691128|gb|AAO91616.1| DNA gyrase A subunit [Erwinia pyrifoliae]
          Length = 183

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 114/172 (66%), Gaps = 1/172 (0%)

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           ++SY I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  
Sbjct: 8   EASYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIAELLRILGSSE 66

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS 
Sbjct: 67  RLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSD 126

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP
Sbjct: 127 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLP 178


>gi|321268250|gb|ADW78933.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 87/109 (79%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFD 109


>gi|228470872|ref|ZP_04055717.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
 gi|228307269|gb|EEK16283.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 181/360 (50%), Gaps = 48/360 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  ++  EEE +G    ++    ++ +L YA  VIL RA+P + DGLKPV RR+L+ M  
Sbjct: 31  ESYVAPKEEEVEGRLH-TLGGMYRHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMHL 89

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           M    N    K A+I G  M  YHPHG+A+I DAL ++ Q    +  LI+ QGN+G++  
Sbjct: 90  ME---NGTLHKVAKIVGATMA-YHPHGDASINDALVQLGQ----KGYLIDTQGNWGNILT 141

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E +L   A  +L   G     +  +YDG  +EPV L AR+P +L  G  G
Sbjct: 142 GDEAAAGRYIEAKLSNFALEIL--FGDKITPWMKSYDGKSREPVYLPARFPLLLAQGAEG 199

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++  I  HN  E+++   A +      L         PDFPTG +I       + Y
Sbjct: 200 IAVGLSCKILPHNPKELIEAACAHLRGEPFTL--------YPDFPTGGII-----DVDRY 246

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE-----LVREKRIVDI 296
             G+    ++  + IE+   DR  + V ++P+    + +++ I +     L++ KRI D+
Sbjct: 247 NDGKRGGQVKSRARIERIE-DR-VLSVRDLPFGKTTSTLIDSILKANDKGLIKIKRIDDM 304

Query: 297 ----ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
               AD+R           I L  G SAD  ++ LY +T  +   S N   +   KP RF
Sbjct: 305 TAETADIR-----------IYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKP-RF 352


>gi|149370480|ref|ZP_01890169.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
 gi|149356031|gb|EDM44588.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
          Length = 896

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 171/341 (50%), Gaps = 32/341 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE + IT V  T   +  +L YA  VIL RA+P + DG KPV RRI+  M  +    + +
Sbjct: 31  EETETITRV--TGMYREWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DGR 85

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAER 129
           Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA R
Sbjct: 86  YNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           Y E R+ K   F LD +    +  ++ +YDG  +EP+ L   +P +L  G  GIAVG++T
Sbjct: 141 YIEARISK---FGLDVVYNPKITKWQASYDGRRKEPINLPVMFPLLLAQGAEGIAVGLST 197

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +  HN  E++D  V  +      L         PDFPTG ++   T   +    G+   
Sbjct: 198 KVLPHNFLELIDASVKYLQGKRFTL--------FPDFPTGGMV-DVTDYNDGLRGGKIKS 248

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             R + H      D+  +V+ EIP+  N  ++++ I  L    +        +++     
Sbjct: 249 RARILQH------DKNTLVIREIPFGTNTGSLIDSI--LKANDKGKIKIKKIEDNTAADV 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
            ++I +  G S D  ++ LY +T+ ++  S     +   KP
Sbjct: 301 EILIHIAAGLSPDKTIDALYAFTNCETSISPLACVIEDNKP 341


>gi|238810376|dbj|BAH70162.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810378|dbj|BAH70163.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810380|dbj|BAH70164.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810382|dbj|BAH70165.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810384|dbj|BAH70166.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810386|dbj|BAH70167.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810388|dbj|BAH70168.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810390|dbj|BAH70169.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810392|dbj|BAH70170.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810394|dbj|BAH70171.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810396|dbj|BAH70172.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810398|dbj|BAH70173.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810400|dbj|BAH70174.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810402|dbj|BAH70175.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810404|dbj|BAH70176.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810406|dbj|BAH70177.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810408|dbj|BAH70178.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810410|dbj|BAH70179.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810412|dbj|BAH70180.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810414|dbj|BAH70181.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810416|dbj|BAH70182.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810418|dbj|BAH70183.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810420|dbj|BAH70184.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810422|dbj|BAH70185.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810424|dbj|BAH70186.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810426|dbj|BAH70187.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810428|dbj|BAH70188.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810430|dbj|BAH70189.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810432|dbj|BAH70190.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810434|dbj|BAH70191.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810436|dbj|BAH70192.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810438|dbj|BAH70193.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810440|dbj|BAH70194.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810442|dbj|BAH70195.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810444|dbj|BAH70196.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810446|dbj|BAH70197.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810448|dbj|BAH70198.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810450|dbj|BAH70199.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810452|dbj|BAH70200.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810454|dbj|BAH70201.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810456|dbj|BAH70202.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810458|dbj|BAH70203.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/137 (52%), Positives = 100/137 (72%), Gaps = 3/137 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLP 119

Query: 169 ARYPNVLVNGGGGIAVG 185
           AR P++L+NG  GIAVG
Sbjct: 120 ARLPHILLNGTMGIAVG 136


>gi|33322875|gb|AAQ07174.1|AF496482_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 138

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 102/137 (74%)

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G+IV+R  + IE     RE+I+
Sbjct: 2   NPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKGNIVVRAKTEIETEKSGRERII 61

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ G R+ I+++R ASA V+LN L
Sbjct: 62  VSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQSGMRITIDVRRDASASVVLNNL 121

Query: 328 YRYTSLQSLFSVNMVAL 344
           ++ T +QS F++NMVA+
Sbjct: 122 FKETQMQSNFAMNMVAI 138


>gi|85376451|gb|ABC70468.1| DNA gyrase [Listonella anguillarum]
          Length = 100

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/100 (65%), Positives = 85/100 (85%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 100


>gi|62184673|ref|YP_219458.1| DNA topoisomerase IV subunit A [Chlamydophila abortus S26/3]
 gi|62147740|emb|CAH63484.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila abortus S26/3]
          Length = 479

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 180/340 (52%), Gaps = 30/340 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G 
Sbjct: 4   VSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGYLIDMQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E++
Sbjct: 116 KEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCELI 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +A+++N    L         PDF +G V+       + Y  G GSI +R        
Sbjct: 174 EAQIAILNNRAFTL--------LPDFYSGGVMDA-----SEYQDGLGSITMRA----SIQ 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           + D++ +++ EI        ++  I E   ++ ++ I  ++D S  Q + + I+L +G  
Sbjct: 217 TVDQKTLIIKEICPSTTTETLIRSI-ENAAKRGVIKIDSIQDFSTDQPH-IEIKLPKGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           A  I+  L++YT  Q + +    A+   KP   ++  ILK
Sbjct: 275 AKDIIEPLFQYTECQVVLTSRPTAIYNNKPVETSISEILK 314


>gi|88802817|ref|ZP_01118344.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
 gi|88781675|gb|EAR12853.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
          Length = 917

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 193/387 (49%), Gaps = 42/387 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + +++ E   T   IT   +  +L YA  VIL RA+P L DGLKPV RRI+  M  +   
Sbjct: 23  TENDQTETVETITKITGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKDLD-- 80

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 81  -DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KELLIDMQGNWGNILTGDRA 134

Query: 126 AAERYTECRLQKAAHFLLDD-LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RY E RL K   F LD      T  ++ +YDG  +EP+ L  ++P +L  G  GIAV
Sbjct: 135 AASRYIEARLSK---FALDVVFNSKTTAWKQSYDGRRKEPIDLPVKFPLLLAQGAEGIAV 191

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG------PDFPTGAVILGRTGIK 238
           G++T +  HN  E++              DA M+ ++G      PDF TG  I   T   
Sbjct: 192 GLSTKVLPHNFIELI--------------DASMKYLKGRSFKILPDFITGG-IADFTNYN 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +    G+  +  R ++ +     D++ +V+ EIP+      +++ I +   EK  + I  
Sbjct: 237 DGVRGGKVRVRAR-IAQL-----DKKTLVINEIPFGTTTTTLIDSIIK-ANEKGKIKIKK 289

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D +  +   +++ L    S D  ++ LY +TS ++  S     +   KP    +  +L
Sbjct: 290 IEDNTAAE-VEILVHLPPNVSPDKTIDALYAFTSCENSISPLSCTIEDNKPVFVGVSEML 348

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAH 385
           K       +++ +  +  LN+  ++ H
Sbjct: 349 KHSTDLTVDLLKKELEIQLNELEEQWH 375


>gi|29691140|gb|AAO91622.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp. odoriferum]
          Length = 183

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 112/167 (67%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI E L IL+S  RL+ +I++
Sbjct: 15  DGHYYLTEPQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIAELLYILNSPERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 135 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 181


>gi|15836248|ref|NP_300772.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae J138]
 gi|8979088|dbj|BAA98923.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
          Length = 478

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 175/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G 
Sbjct: 4   VSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E++
Sbjct: 116 RETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAELL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
              +A++++    +         PDFP+G ++       + Y  G GSI +R    I  +
Sbjct: 174 KAQIAILNDKKFTV--------FPDFPSGGLM-----DPSEYQDGLGSITLRASIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +VV +I  Q     ++  I E   ++  + I  ++D S    + + I+L +G
Sbjct: 221 KT------LVVKQICPQSTTETLIRSI-ENAAKRGTIKIDTIQDFSTDVPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + A  +L  L+ +T  Q +       +   KP   ++  ILK
Sbjct: 273 SRAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILK 314


>gi|163789018|ref|ZP_02183462.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
 gi|159875682|gb|EDP69742.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
          Length = 891

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 166/334 (49%), Gaps = 36/334 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  +    + +Y K A I G 
Sbjct: 22  VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DGRYNKVANIVGH 78

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K  
Sbjct: 79  TM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSK-- 131

Query: 140 HFLLDDLGKDTV-DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            F LD +    + +++ +YDG  +EP+ L   +P +L  GG GIAVG++T I  HN  E+
Sbjct: 132 -FALDVVYNPKITEWQASYDGRRKEPINLPVMFPLLLAQGGEGIAVGLSTKILPHNFIEL 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV---ILGRTGIKNAYATGRGSIVIRGVSH 255
           +D  V  +      +         PDFPT  +        G++      R  I  R    
Sbjct: 191 IDASVKHLKGKRFTI--------LPDFPTAGIADFTNYNDGLRGGKVRVRAKIAQR---- 238

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
                 D+  + +TEIP+    +++++ I  L    +        +++      ++I L 
Sbjct: 239 ------DKNTLAITEIPFATTTSSLIDSI--LKANDKGKIKIKKIEDNTAAEVEILIHLP 290

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
            G S D  ++ LY +T+ ++  S     +   KP
Sbjct: 291 SGLSPDKTIDALYAFTNCETSISPLGCVIEDNKP 324


>gi|15618626|ref|NP_224912.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae CWL029]
 gi|16752324|ref|NP_444582.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae AR39]
 gi|33242075|ref|NP_877016.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
 gi|4377020|gb|AAD18855.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
 gi|7188969|gb|AAF37925.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|33236585|gb|AAP98673.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 478

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 175/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G 
Sbjct: 4   VSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E++
Sbjct: 116 RETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAELL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
              +A++++    +         PDFP+G ++       + Y  G GSI +R    I  +
Sbjct: 174 KAQIAILNDKKFTV--------FPDFPSGGLM-----DPSEYQDGLGSITLRASIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +VV +I  Q     ++  I E   ++  + I  ++D S    + + I+L +G
Sbjct: 221 KT------LVVKQICPQSTTETLIRSI-ENAAKRGTIKIDTIQDFSTDVPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + A  +L  L+ +T  Q +       +   KP   ++  ILK
Sbjct: 273 SRAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILK 314


>gi|269302504|gb|ACZ32604.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 478

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 175/342 (51%), Gaps = 34/342 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G 
Sbjct: 4   VSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E++
Sbjct: 116 RETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAELL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI--E 257
              +A++++    +         PDFP+G ++       + Y  G GSI +R    I  +
Sbjct: 174 KAQIAILNDKKFTV--------FPDFPSGGLM-----DPSEYQDGLGSITLRASIDIIND 220

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           KT      +VV +I  Q     ++  I E   ++  + I  ++D S    + + I+L +G
Sbjct: 221 KT------LVVKQICPQSTTETLIRSI-ENAAKRGTIKIDTIQDFSTDVPH-IEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + A  +L  L+ +T  Q +       +   KP   ++  ILK
Sbjct: 273 SRAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILK 314


>gi|219815943|gb|ACL37058.1| GyrA [Salmonella enterica]
          Length = 104

 Score =  151 bits (382), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/101 (62%), Positives = 87/101 (86%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+
Sbjct: 2   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 62  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 102


>gi|29691138|gb|AAO91621.1| DNA gyrase A subunit [Pectobacterium wasabiae]
          Length = 183

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 111/167 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I++
Sbjct: 15  DGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIAELLYILNSPERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 135 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 181


>gi|29691130|gb|AAO91617.1| DNA gyrase A subunit [Erwinia amylovora]
          Length = 183

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 110/164 (67%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 15  NGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP
Sbjct: 135 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLP 178


>gi|29691134|gb|AAO91619.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 183

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 111/167 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I++
Sbjct: 15  DGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 135 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 181


>gi|321268246|gb|ADW78931.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268254|gb|ADW78935.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 87/112 (77%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++
Sbjct: 1   HRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVD 60

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 112


>gi|254993922|ref|ZP_05276112.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 492

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 211/410 (51%), Gaps = 51/410 (12%)

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R H+L GL  A++ 
Sbjct: 2   YNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSI 61

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTR 455
           LDEV+++IR S +   A+  L                            T Y  SE Q  
Sbjct: 62  LDEVIKLIRGSKDKRDAKLNLQ---------------------------TKYDFSEKQAE 94

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K+EL  +K +  T 
Sbjct: 95  AIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA 154

Query: 516 RRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
           RRT +   +  + ++ E  +  ED++V+V+  GYVKR     Y A        + + M++
Sbjct: 155 RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS-----NGAELAMKE 209

Query: 574 EDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALINILS-LNQGERIT 631
            D    +  +++  S+L F+S G F+Y+  V  LP    +  G  + ++ S L+ GE I 
Sbjct: 210 ADHAVFIQKMNSLDSLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVSHLASDLSAGEEIR 268

Query: 632 T---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686
           +   I  F E++        +F TK+G  +++ ++++ +  R  K  +A+KL   DE+L+
Sbjct: 269 SAIAIQAFTEEKR------FLFVTKNGMTKQSAITNY-KPQRYSKSMMAIKLKGDDELLN 321

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           V       DI L TK G  +R+ I+ I   +G  + GV+ I+L + D VI
Sbjct: 322 VHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTAGVKAINLKQDDIVI 370


>gi|29691132|gb|AAO91618.1| DNA gyrase A subunit [Pectobacterium betavasculorum]
          Length = 183

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 111/167 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I++
Sbjct: 15  DGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 135 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 181


>gi|218507099|ref|ZP_03504977.1| DNA gyrase subunit A [Rhizobium etli Brasil 5]
          Length = 97

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 83/97 (85%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGR
Sbjct: 1   MATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           GS+++RGV+ IE   GDREQI++TEIPYQVNKA M+E
Sbjct: 61  GSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 97


>gi|60678990|gb|AAX33776.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 136

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/129 (50%), Positives = 95/129 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++++KK+ K ARI G+V+GKYHPHG+ ++YDA+  +AQ W + + L+   GN GS+D 
Sbjct: 7   LGLDFDKKFKKSARIVGDVIGKYHPHGDTSVYDAMINLAQWWKMNIPLLSMHGNIGSIDD 66

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE +L K A++++ D+ K TV F PN+D S  EP+VL + +PN+LVNG  GI
Sbjct: 67  DKQAAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGI 126

Query: 183 AVGMATNIP 191
           A+GMAT +P
Sbjct: 127 AIGMATEMP 135


>gi|329942344|ref|ZP_08291154.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|313847582|emb|CBY16570.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila psittaci RD1]
 gi|325506857|gb|ADZ18495.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|328815254|gb|EGF85242.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|328914216|gb|AEB55049.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila psittaci 6BC]
          Length = 479

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 180/340 (52%), Gaps = 30/340 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G 
Sbjct: 4   VSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M   HPHG+A I +AL  +A     +  LI+ QGNFG+ + GDP AA RY E RL   A
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KGYLIDMQGNFGNPLTGDPHAAARYIEARLSPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E++
Sbjct: 116 KEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCELI 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +A+++N    L         PDF +G V+       + Y  G GSI +R        
Sbjct: 174 EAQIAILNNRAFTL--------LPDFYSGGVMDA-----SEYQDGLGSITMRA----SIQ 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           + D++ +++ EI        ++  I E   ++ ++ I  ++D S  Q + + I+L +G  
Sbjct: 217 TVDQKTLIIKEICPSTTTETLIRSI-ENAAKRGVIKIDSIQDFSTDQPH-IEIKLPKGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           A  I+  L+++T  Q + +    A+   KP   ++  ILK
Sbjct: 275 AKDIIEPLFQHTECQVVLTSRPTAIYNNKPIETSVSEILK 314


>gi|289573609|ref|ZP_06453836.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
 gi|289538040|gb|EFD42618.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
          Length = 252

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 113/186 (60%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL  +
Sbjct: 4   IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEI 63

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
            D     RRTRI+    D+ DED I RED+VVT++  GY KR    +YR+Q+RGGKG  G
Sbjct: 64  VDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQG 123

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG+ + N+L+    E
Sbjct: 124 AGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEE 183

Query: 629 RITTIM 634
           RI  ++
Sbjct: 184 RIAQVI 189



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++  +  EI     D       + +G++S+E   +L  +E  ++T++E G+ KRT +
Sbjct: 52  QRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 108

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  + +G + R    ++  AS
Sbjct: 109 DLYRSQKRGGKGVQGAGLKQDDIVAHF---FVCSTHDLILFFTTQGRVYRAKAYDLPEAS 165

Query: 875 RATKG---VVIFSTAKDERVVSVERIR 898
           R  +G     + +   +ER+  V +IR
Sbjct: 166 RTARGQHVANLLAFQPEERIAQVIQIR 192


>gi|260204186|ref|ZP_05771677.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
          Length = 257

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 113/186 (60%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL  +
Sbjct: 4   IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEI 63

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
            D     RRTRI+    D+ DED I RED+VVT++  GY KR    +YR+Q+RGGKG  G
Sbjct: 64  VDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQG 123

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG+ + N+L+    E
Sbjct: 124 AGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEE 183

Query: 629 RITTIM 634
           RI  ++
Sbjct: 184 RIAQVI 189



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           QR ++  +  EI     D       + +G++S+E   +L  +E  ++T++E G+ KRT +
Sbjct: 52  QRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 108

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++   + + + +      F  + +D I+  + +G + R    ++  AS
Sbjct: 109 DLYRSQKRGGKGVQGAGLKQDDIVAHF---FVCSTHDLILFFTTQGRVYRAKAYDLPEAS 165

Query: 875 RATKG---VVIFSTAKDERVVSVERIR 898
           R  +G     + +   +ER+  V +IR
Sbjct: 166 RTARGQHVANLLAFQPEERIAQVIQIR 192


>gi|146300230|ref|YP_001194821.1| DNA topoisomerase IV subunit A [Flavobacterium johnsoniae UW101]
 gi|146154648|gb|ABQ05502.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacterium johnsoniae
           UW101]
          Length = 906

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 175/336 (52%), Gaps = 33/336 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   + EEE + + +  +T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 45  QHFYENQEEEGEDVIT-KVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        ++  +YDG   EP+ L  ++P +L  G  G
Sbjct: 156 GDGAAAPRYIEARLSKFALEVL--YSPKITEWGLSYDGRKAEPINLPVKFPMLLAQGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T +  HN  E++D  + ++      L         PDF T  +      + N  
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKILKGKPFTL--------YPDFMTQGI----ADVSNYN 261

Query: 242 ATGRGSIV-IRG-VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
              RG  V +R  +S ++K +     +V+T+IP+  N +++++ I  L    +       
Sbjct: 262 DGMRGGRVRVRAKISQLDKNT-----LVITQIPFSTNTSSLIDSI--LKANDKGKIKIKK 314

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
            +++      ++I L  G S D  ++ L+ +T+ ++
Sbjct: 315 IEDNTAADVEILIHLFPGVSPDKTIDALFAFTACET 350


>gi|298208511|ref|YP_003716690.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
 gi|83848434|gb|EAP86303.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
          Length = 897

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 173/343 (50%), Gaps = 30/343 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
             +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  +    + +Y K A I 
Sbjct: 37  TKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DGRYNKVANIV 93

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K
Sbjct: 94  GHTM-QYHPHGDASIGDAMVQVGQ----KDLLIDMQGNWGNILTGDRAAASRYIEARLSK 148

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L        D++ +YDG  +EP+ L  R+P +L  G  GIAVG++T I  HN  E
Sbjct: 149 FALEVL--FNPKITDWQLSYDGRRKEPINLPVRFPLLLAQGAEGIAVGLSTRILPHNFIE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +  +      +         PDF TG    G   I N Y  G     +R  + I 
Sbjct: 207 LIDASIKHLQGKRFKI--------YPDFQTG----GEADISN-YNDGLRGGKVRVRAKI- 252

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +  D+  ++++EIPY      +++ I  L    +        +++      +++ L   
Sbjct: 253 -SQQDKNTLLISEIPYGTTTTTLIDSI--LKANDKGKIKIKKIEDNTAANVEILVHLPPN 309

Query: 318 ASADVILNQLYRYTSL-QSLFSVNMVALNGYKPERFTLIGILK 359
            S D  ++ LY +T   +S+  ++ + +N  +PE   +  IL+
Sbjct: 310 ISPDKTIDALYAFTRCEESISPLSCIIINN-RPEFIGVSEILR 351


>gi|29691136|gb|AAO91620.1| DNA gyrase A subunit [Pectobacterium atrosepticum]
          Length = 183

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 111/167 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL++  RL+ +I++
Sbjct: 15  DGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNNPERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELEAIKTQYSDERRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 135 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 181


>gi|321268236|gb|ADW78926.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268238|gb|ADW78927.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268248|gb|ADW78932.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268252|gb|ADW78934.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 87/113 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           QGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 113


>gi|11095196|gb|AAG29770.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/106 (63%), Positives = 86/106 (81%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           AQ WS R LL++G GNFGS+DGD  AA+RYTE R+ K A  LL D+
Sbjct: 61  AQWWSYRHLLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|7532891|gb|AAF63268.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532893|gb|AAF63269.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532895|gb|AAF63270.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532897|gb|AAF63271.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532931|gb|AAF63288.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532933|gb|AAF63289.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532935|gb|AAF63290.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532937|gb|AAF63291.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532939|gb|AAF63292.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/106 (62%), Positives = 87/106 (82%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           AQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+
Sbjct: 61  AQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|269838905|ref|YP_001950213.2| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|239793701|dbj|BAG41783.2| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 514

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 108/190 (56%), Gaps = 9/190 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +   S+ D  + +   Y   V L R++PDL DGLKPV RRIL+   Q+      ++ 
Sbjct: 18  DRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQVC---RTQFE 74

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR++G  MG YHPHGN+AIY A   M Q  S  LL   G+GNFGS+  D  AAERYT 
Sbjct: 75  KSARLTGHCMGAYHPHGNSAIYSAAVNMVQHPSPTLL---GKGNFGSMT-DGAAAERYTN 130

Query: 133 CRLQKAAHFLLDD--LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            RL        D   +  +T  F PNYD    EPV L A+ PNVL+NGG GI VG+ T +
Sbjct: 131 VRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKL 190

Query: 191 PTHNLGEVVD 200
           PT     V++
Sbjct: 191 PTFTPESVLE 200


>gi|238810460|dbj|BAH70204.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810462|dbj|BAH70205.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810464|dbj|BAH70206.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810466|dbj|BAH70207.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810468|dbj|BAH70208.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810470|dbj|BAH70209.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810472|dbj|BAH70210.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810474|dbj|BAH70211.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810476|dbj|BAH70212.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810478|dbj|BAH70213.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810480|dbj|BAH70214.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 3/137 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLP 119

Query: 169 ARYPNVLVNGGGGIAVG 185
           AR P++L+NG  GIAVG
Sbjct: 120 ARLPHILLNGTMGIAVG 136


>gi|90017826|gb|ABD83869.1| topoisomerase II subunit A [Haemophilus sp. COAD036]
 gi|90017828|gb|ABD83870.1| topoisomerase II subunit A [Haemophilus sp. COAD165]
 gi|90017830|gb|ABD83871.1| topoisomerase II subunit A [Haemophilus sp. COAD591]
          Length = 115

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 67/109 (61%), Positives = 81/109 (74%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 6   GNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 65

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P
Sbjct: 66  APAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIP 114


>gi|309753204|gb|ADO85625.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 80/105 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           HG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE
Sbjct: 61  HGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 105


>gi|321268256|gb|ADW78936.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 86/111 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           QGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 111


>gi|46946646|gb|AAT06571.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 86/112 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG+  +YD + RMAQ++++R +LI+GQGNFGSVDG   A
Sbjct: 2   WNAAYKKSARIVGDVIGKYHPHGDFPVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           A RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG
Sbjct: 62  AMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNG 113


>gi|92919084|gb|ABE96893.1| DNA gyrase A subunit [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 98

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 80/98 (81%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+ G+V+GKYHPHG+ A+YD 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARVVGDVIGKYHPHGDTAVYDT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R
Sbjct: 61  IVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIR 98


>gi|46946650|gb|AAT06573.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 86/112 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   A
Sbjct: 2   WNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSVDGLAAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           A RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG
Sbjct: 62  AMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNG 113


>gi|282889677|ref|ZP_06298216.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500251|gb|EFB42531.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 150/293 (51%), Gaps = 31/293 (10%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           K  K A ++G+ M  YHPHG+A I +AL  MA     R  L++ QGNFG++  GDP AA 
Sbjct: 5   KLHKVANVAGQTMA-YHPHGDAPITEALVNMAN----RGYLLDQQGNFGNIFTGDPAAAA 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL   A   L     D   + P+YDG  QEP+VL A+ P +L+ G  GIAVGM+T
Sbjct: 60  RYIETRLAALAKETL--FNPDLTAYAPSYDGRHQEPIVLPAKIPLLLMQGATGIAVGMST 117

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA--YATGRG 246
           +I  HN  E+++  +A++++ +  +         PDFPTG       GI +A  Y  GRG
Sbjct: 118 SILPHNFEELLEAEIAILEDREFSV--------FPDFPTG-------GIMDASDYNQGRG 162

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            + +R    +     D + +V+TEI Y     +++  I E  +  +I    D  ++   +
Sbjct: 163 KVKLRAKIEVR----DPKTLVITEICYGTTTESLIRSIDEAAKRGKIK--IDAINDYTAE 216

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
              + I+L RG  A+ ++  LY YT  +      +V +    P    +  ILK
Sbjct: 217 KVEIEIKLPRGQYAEELIQALYAYTECEVAIHSQIVVIKDDLPWETDVDSILK 269


>gi|46946648|gb|AAT06572.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 86/112 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   A
Sbjct: 2   WNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           A RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG
Sbjct: 62  AMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNG 113


>gi|309753206|gb|ADO85626.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 80/105 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           HG+A+IY+ L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE
Sbjct: 61  HGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 105


>gi|208972194|gb|ACI32675.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 117

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 87/115 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++G+GNFGS+DGD
Sbjct: 3   GNDWNKAYKKSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGRGNFGSIDGD 62

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG
Sbjct: 63  SAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 117


>gi|110451856|gb|ABG74482.1| mutant ParC [Neisseria gonorrhoeae]
          Length = 125

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 90/125 (72%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           +YL Y ++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHP
Sbjct: 1   AYLEYPMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ 
Sbjct: 61  HGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEIN 120

Query: 148 KDTVD 152
           + TV+
Sbjct: 121 QGTVE 125


>gi|309753208|gb|ADO85627.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           HG+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE
Sbjct: 61  HGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 105


>gi|171850795|emb|CAP11080.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 110

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/110 (60%), Positives = 86/110 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNF 110


>gi|321268234|gb|ADW78925.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|321268242|gb|ADW78929.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 86/112 (76%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 112


>gi|309753212|gb|ADO85629.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           HG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE
Sbjct: 61  HGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 105


>gi|7021435|gb|AAF35344.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021437|gb|AAF35345.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021439|gb|AAF35346.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021441|gb|AAF35347.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532941|gb|AAF63293.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532943|gb|AAF63294.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532945|gb|AAF63295.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532947|gb|AAF63296.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532949|gb|AAF63297.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 88/123 (71%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKN 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 167 LCA 169
           L A
Sbjct: 121 LPA 123


>gi|15215561|gb|AAK91512.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 84/105 (80%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD
Sbjct: 63  GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGD 107


>gi|297568941|ref|YP_003690285.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924856|gb|ADH85666.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 660

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 166/325 (51%), Gaps = 34/325 (10%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           +++ Y   VI  RAIPDL DGLKPV RRIL  +  +    + ++ K A + GE M K HP
Sbjct: 16  NFIDYTSYVIRERAIPDLADGLKPVQRRILQTLHNVD---DGRFHKVANVVGETM-KLHP 71

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDL 146
           HG+A+I+ AL  +A     +  L++ QGNFG++  GD  +A RY ECRL   A   +   
Sbjct: 72  HGDASIFSALVNLAN----KGYLVDRQGNFGNIYTGDSASAARYIECRLTPLARETM--F 125

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            ++  +F  +YDG  +EPV L A+ P +L+ G  GIAVGMAT I  HN  E++     ++
Sbjct: 126 NRELTEFTDSYDGRMKEPVSLPAKLPLLLLQGAEGIAVGMATKIMPHNFCELLQAQKKIL 185

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              +  +         PDF  G ++       +AY  G G +  R  + IE+   D + I
Sbjct: 186 QGEEFAV--------YPDFYQGGLL-----DVSAYDDGNGRLRCR--ARIEEK--DDKTI 228

Query: 267 VVTEIPYQVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           ++ EIP+  N   ++E + +  R  + +I+ I D   E       + I+L RG  A+  +
Sbjct: 229 IIREIPFGTNTQGLIESVEKAARAGKFKILSINDYTAEE----VEIEIKLARGLKAEETI 284

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKP 349
             LY +T  +   S N   +    P
Sbjct: 285 KALYAFTDCELAISPNFTVIRDRNP 309


>gi|225550344|ref|ZP_03771293.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379498|gb|EEH01860.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 143

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 94/136 (69%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y 
Sbjct: 5   QQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGK 148
            RL K A  +L +L K
Sbjct: 125 TRLSKIASVMLTNLKK 140


>gi|309753210|gb|ADO85628.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           HG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE
Sbjct: 61  HGDASIYYTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTE 105


>gi|321268232|gb|ADW78924.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268244|gb|ADW78930.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 110

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|15215563|gb|AAK91513.1| gyrase subunit A [Campylobacter coli]
 gi|15215565|gb|AAK91514.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 84/105 (80%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGD 107


>gi|15215559|gb|AAK91511.1| gyrase subunit A [Campylobacter coli]
          Length = 108

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 84/105 (80%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGD 107


>gi|121822793|gb|ABM65608.1| DNA topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 119

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/119 (58%), Positives = 90/119 (75%), Gaps = 3/119 (2%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 59

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 60  SRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIP 118


>gi|18874556|gb|AAL79843.1|AF473701_1 DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida]
          Length = 134

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 3/135 (2%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++
Sbjct: 1   QRRIIYAMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVD 60

Query: 113 GQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           GQGN+G+ D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ +EPVVL AR
Sbjct: 61  GQGNWGAPD-DPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPAR 119

Query: 171 YPNVLVNGGGGIAVG 185
            P++L+NG  GIAVG
Sbjct: 120 LPHILLNGITGIAVG 134


>gi|7021443|gb|AAF35348.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/123 (54%), Positives = 87/123 (70%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ +IYDA+ RM+QDW  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKN 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 167 LCA 169
           L A
Sbjct: 121 LPA 123


>gi|169787190|gb|ACA80034.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 104/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L ILSS  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILSSSERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|226327145|ref|ZP_03802663.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
 gi|225204363|gb|EEG86717.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 95/135 (70%), Gaps = 3/135 (2%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           MAQ +S R  LI+GQGN+G+ D DP   AA RYTE RL K +  LL +LG  TVD+ PN+
Sbjct: 1   MAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQTLLSELGHGTVDWIPNF 59

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ QEP +L AR PN+++NG  GIAVGMAT+IP HN  E+    V ++DNPD  L  +M
Sbjct: 60  DGTMQEPKMLPARLPNIVLNGTTGIAVGMATDIPPHNAREIGQALVMLLDNPDAGLSDVM 119

Query: 218 EIIRGPDFPTGAVIL 232
           + ++GPD+PT A I+
Sbjct: 120 QYVQGPDYPTEAEII 134


>gi|296005999|gb|ADG65216.1| gyrase subunit A [Mycobacterium tuberculosis]
          Length = 105

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 77/103 (74%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           Y+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPH
Sbjct: 1   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           G+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYT 103


>gi|168480769|gb|ACA24478.1| DNA gyrase [Wolbachia endosymbiont of Romanomermis iyengari]
          Length = 107

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/99 (63%), Positives = 79/99 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RAIPD+RDG KPVHRRIL+ M + G +  K Y K A I GEV+GKYHPHG+AA+YD++
Sbjct: 5   ISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAAGIVGEVIGKYHPHGDAAVYDSM 64

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
            RMAQD++L +LL++G GNFGSV GDP A+ RYTE RLQ
Sbjct: 65  VRMAQDFTLLILLVDGHGNFGSVGGDPAASMRYTEARLQ 103


>gi|290578687|gb|ADD51240.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578689|gb|ADD51241.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578691|gb|ADD51242.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578693|gb|ADD51243.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578695|gb|ADD51244.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578699|gb|ADD51246.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578703|gb|ADD51248.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578705|gb|ADD51249.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578707|gb|ADD51250.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578709|gb|ADD51251.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578711|gb|ADD51252.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578713|gb|ADD51253.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578715|gb|ADD51254.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578717|gb|ADD51255.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|121822824|gb|ABM65609.1| DNA topoisomerase IV subunit [Shigella flexneri]
          Length = 119

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/119 (57%), Positives = 89/119 (74%), Gaps = 3/119 (2%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 59

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 60  SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 118


>gi|169787156|gb|ACA80017.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 103/159 (64%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|169787176|gb|ACA80027.1| GyrA [Pectobacterium atrosepticum SCRI1043]
          Length = 163

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 104/159 (65%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILNSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|45685139|gb|AAS75323.1| DNA gyrase subunit A [Corynebacterium striatum]
          Length = 112

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 82/111 (73%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GG
Sbjct: 62  TECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGG 112


>gi|255022892|ref|ZP_05294878.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-208]
          Length = 303

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 165/304 (54%), Gaps = 35/304 (11%)

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++
Sbjct: 22  GLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQK 81

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E++ +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L Q +++   
Sbjct: 82  EIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTNYD--- 137

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  SE Q  AI+ L+L RLT     ++++E  SL  +I  
Sbjct: 138 ----------------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISV 175

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSH 544
              IL   + L+ ++K+EL  +K +  T RRT +   +  + ++ E  +  ED++V+V+ 
Sbjct: 176 LEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTK 235

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKV 603
            GYVKR     Y A        + + M++ D    +  +++  S+L F+S G F+Y+  V
Sbjct: 236 EGYVKRTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PV 289

Query: 604 WRLP 607
             LP
Sbjct: 290 HELP 293


>gi|290578681|gb|ADD51237.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578683|gb|ADD51238.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578685|gb|ADD51239.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTITV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|290578697|gb|ADD51245.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|124108785|gb|ABM90969.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 98

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 78/98 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 98


>gi|46946652|gb|AAT06574.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 110

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 85/108 (78%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 2   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           TE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG
Sbjct: 62  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNG 109


>gi|28865596|emb|CAD48112.1| gyrase A subunit [Haemophilus influenzae]
          Length = 108

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG
Sbjct: 61  VRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 106


>gi|169787154|gb|ACA80016.1| GyrA [Brenneria rubrifaciens]
 gi|169787160|gb|ACA80019.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787162|gb|ACA80020.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787178|gb|ACA80028.1| GyrA [Pectobacterium atrosepticum]
 gi|169787180|gb|ACA80029.1| GyrA [Pectobacterium carotovorum subsp. odoriferum]
 gi|169787182|gb|ACA80030.1| GyrA [Erwinia chrysanthemi]
 gi|169787184|gb|ACA80031.1| GyrA [Erwinia chrysanthemi]
          Length = 163

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 103/159 (64%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|169787164|gb|ACA80021.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 103/159 (64%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|169787186|gb|ACA80032.1| GyrA [Pantoea agglomerans]
          Length = 163

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 105/156 (67%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I E L ILS+  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELLRILSNADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRGG
Sbjct: 65  ELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787188|gb|ACA80033.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 102/156 (65%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH  +L FSS G VY
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 160


>gi|16754842|emb|CAD10664.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/102 (61%), Positives = 80/102 (78%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDF 102


>gi|16754840|emb|CAD10663.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/102 (61%), Positives = 80/102 (78%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDF 102


>gi|169787138|gb|ACA80008.1| GyrA [Erwinia rhapontici]
          Length = 163

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 103/159 (64%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|18175500|gb|AAL60063.1| topoisomerase IV subunit A [Yersinia enterocolitica]
          Length = 128

 Score =  140 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/127 (52%), Positives = 93/127 (73%), Gaps = 3/127 (2%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           QGN+G+ D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR 
Sbjct: 61  QGNWGAPD-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARL 119

Query: 172 PNVLVNG 178
           PN+L+NG
Sbjct: 120 PNILLNG 126


>gi|169787158|gb|ACA80018.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSDRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRGG
Sbjct: 65  ELELIRDQFGDKRRTEITANSADINMEDLINQEDVVVTLSHQGYVKYQPLTEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787134|gb|ACA80006.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSSDRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|45550208|gb|AAS67882.1| GyrA [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 104

 Score =  140 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|297516663|ref|ZP_06935049.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 510

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 222/493 (45%), Gaps = 68/493 (13%)

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--I 323
           +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ + R    D+  +
Sbjct: 10  VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 69

Query: 324 LNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           +N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L K  
Sbjct: 70  MNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 128

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R H+L GL +A  N+DEV+ IIR    P+ A   LM R                     
Sbjct: 129 KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------------- 164

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                  L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++
Sbjct: 165 -----FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 219

Query: 502 KQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           K+EL +        RR+ +   E    M + D +  E + + +S +G+V           
Sbjct: 220 KKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV----------- 268

Query: 560 RRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
            R  KG      G+  +  D         ++  V+F  S G  Y       PI  P ARG
Sbjct: 269 -RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSARG 323

Query: 616 KA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +   L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR+GK
Sbjct: 324 QGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGK 377

Query: 674 IAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA---GRNSVGVRGISL 729
             + L     ++        +D+LL  T+ G+ + FP+S +   +   G   + +     
Sbjct: 378 ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEA 437

Query: 730 AKGDQVISMAIVL 742
           A+G+  ++   VL
Sbjct: 438 ARGEDGLAQLYVL 450


>gi|169787136|gb|ACA80007.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 102/156 (65%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH  +L FSS G VY
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY 160


>gi|169787140|gb|ACA80009.1| GyrA [Erwinia psidii]
 gi|169787142|gb|ACA80010.1| GyrA [Erwinia psidii]
          Length = 163

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I E + IL S  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELIYILESAERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I  ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELIRDQFGDQRRTEITANSADINIEDLINEEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787170|gb|ACA80024.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 102/159 (64%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  V ++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELVDEQFGDERRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163


>gi|169787168|gb|ACA80023.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 5   DGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLHILNSPERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +G+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|260100982|gb|ACX31656.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 109

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/107 (58%), Positives = 83/107 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++G
Sbjct: 1   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           QGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N+DG+
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNHDGT 107


>gi|169787144|gb|ACA80011.1| GyrA [Brenneria quercina]
 gi|169787146|gb|ACA80012.1| GyrA [Brenneria quercina]
 gi|169787148|gb|ACA80013.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   DGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRGG
Sbjct: 65  ELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|108711710|gb|ABF99505.1| DNA gyrase subunit A, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215765245|dbj|BAG86942.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 356

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 171/354 (48%), Gaps = 52/354 (14%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           M++ +S  GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G 
Sbjct: 1   MLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGI 60

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKH 654
           VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P   F ED+      Y+V  T +
Sbjct: 61  VYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVMLTVN 114

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G +++  L+ F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R
Sbjct: 115 GYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLR 174

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV  + L +GD++ SM I+                                 
Sbjct: 175 AL-GRKTRGVLAMKLKEGDKMASMDII--------------------------------- 200

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +   N+ E   +   L   ++L +++ G GKR     FR  N +  G++   +  
Sbjct: 201 ----PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPP 256

Query: 835 INEIGALVAV-FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              + A+  V F + D    ++Q++LVS  GT+ R+ V +I I SR+ +GV++ 
Sbjct: 257 DCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 310


>gi|42718131|gb|AAS38489.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718133|gb|AAS38490.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718135|gb|AAS38491.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/97 (63%), Positives = 76/97 (78%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 3   NKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 62

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            RYTE R+QK    LL DL K+TV+F PNYDG    P
Sbjct: 63  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|313635489|gb|EFS01727.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 112

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 84/110 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGS
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGS 112


>gi|321268240|gb|ADW78928.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 106

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 82/104 (78%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFD 104


>gi|164456292|dbj|BAF97649.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456302|dbj|BAF97654.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456308|dbj|BAF97657.1| DNA gyrase subunit A [Corynebacterium accolens]
 gi|164456314|dbj|BAF97660.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456318|dbj|BAF97662.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456328|dbj|BAF97667.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 81/111 (72%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|169787194|gb|ACA80036.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   EGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMKVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787174|gb|ACA80026.1| GyrA [Pectobacterium wasabiae]
          Length = 163

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 5   DGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILNSPERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELEAIDTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +G+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787192|gb|ACA80035.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   EGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           KG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|169787172|gb|ACA80025.1| GyrA [Pectobacterium wasabiae WPP163]
          Length = 163

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 5   DGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLEQIAELLHILNSPERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +G+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|75758773|ref|ZP_00738888.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904159|ref|ZP_04068254.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228930729|ref|ZP_04093707.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493783|gb|EAO56884.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828976|gb|EEM74635.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855244|gb|EEM99808.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 745

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 187/396 (47%), Gaps = 31/396 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           Y+ YA  V+  RA+ D+RDGLKPV R  L+ M +   E  K  +K  ++   V+ KYHPH
Sbjct: 52  YIDYAREVLTNRALEDIRDGLKPVQRYALYWMFK---EKAKDMIKSEQVGAGVL-KYHPH 107

Query: 89  GNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFLLDDL 146
              + Y++L +M + + +  + L+ G+G  G       PAA RYT  +  + A  +   +
Sbjct: 108 NADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAKEMFTAM 167

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
             D +D   N+D + + P VL A  P +L+    GIAVG +T  P+    +V +     I
Sbjct: 168 --DGIDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTNLVREYI 225

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
                  D     +  PDF TG  I      ++    TG+GS + RG   I     D + 
Sbjct: 226 R------DGKCSTMIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI-----DGKN 274

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD--LRDESDRQGYRVVIELKRGASADVI 323
           IVVTE+P    +   +EKI + + +  I  I      D + + G    I  +       +
Sbjct: 275 IVVTEVP----QGVTVEKIMKEIEKAEIQGITPNGYSDLTGKDGCYFEITCRAKNRVQEV 330

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           L +LY  TSLQ  F+ N++A+   K     + GI+  +V +R +V+ R+T+  L K  + 
Sbjct: 331 LMELYTKTSLQKKFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLDLAKLVES 390

Query: 384 AHVLVG----LAIAVANLDEVVRIIRFSPNPETARR 415
           A    G    LAI  A  DE+V +     + +  +R
Sbjct: 391 AKYTKGFIDLLAIEGAR-DEIVELTTKKSDNDAIKR 425


>gi|42718129|gb|AAS38488.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/97 (62%), Positives = 77/97 (79%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NKKYVK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA
Sbjct: 3   NKKYVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAA 62

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            RYTE R+QK    LL DL K+TV+F PNYDG    P
Sbjct: 63  MRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|110456319|gb|ABG74700.1| GyrA [Neisseria gonorrhoeae]
          Length = 109

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/108 (57%), Positives = 84/108 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y+ + RMA ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 1   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAHNFAMRYVLIDGQGNFGSVDGLAAAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           TE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG
Sbjct: 61  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNG 108


>gi|169787166|gb|ACA80022.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 5   DGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLHILNSPERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELEAINTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +G+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|319444107|gb|ADV58131.1| GyrA [Acinetobacter baumannii]
          Length = 102

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH 
Sbjct: 1   IGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHE 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIA
Sbjct: 61  LLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIA 102


>gi|169787150|gb|ACA80014.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL++  RL+ +I++
Sbjct: 5   DGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLYILANPERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  +K++    RRT I     D+  ED I +ED+V T+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELEVIKEQYRDERRTEITHNTADINIEDLICQEDVVATLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +G+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|290578671|gb|ADD51232.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578673|gb|ADD51233.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578675|gb|ADD51234.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578677|gb|ADD51235.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578679|gb|ADD51236.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 93/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|164456320|dbj|BAF97663.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 80/111 (72%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+ AIYD L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDLAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|18448212|gb|AAL69651.1|AF372652_1 topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 137

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/135 (48%), Positives = 92/135 (68%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDL 146
           E RL    + +L+++
Sbjct: 122 EARLSHYGNLMLENI 136


>gi|134141855|gb|ABO61322.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141857|gb|ABO61323.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141859|gb|ABO61324.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141861|gb|ABO61325.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141863|gb|ABO61326.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/127 (51%), Positives = 93/127 (73%), Gaps = 3/127 (2%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           QGN+G+ D DP   AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR 
Sbjct: 61  QGNWGAPD-DPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARL 119

Query: 172 PNVLVNG 178
           P++L+NG
Sbjct: 120 PHILLNG 126


>gi|213023343|ref|ZP_03337790.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 169

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/168 (45%), Positives = 106/168 (63%), Gaps = 8/168 (4%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EV
Sbjct: 2   RIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREV 61

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++ 
Sbjct: 62  VTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVA 121

Query: 429 DLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGL 468
            +++   D +          G  DG  YL+E Q +AIL+LRL +LTGL
Sbjct: 122 AMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGL 169


>gi|169787132|gb|ACA80005.1| GyrA [Erwinia amylovora]
          Length = 155

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 101/152 (66%)

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++E
Sbjct: 2   GLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIREE 61

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGK
Sbjct: 62  LELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGK 121

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           G+S   +++EDF+  L + +TH ++L FSS G
Sbjct: 122 GKSAARIKEEDFIDRLLVANTHDTILCFSSRG 153


>gi|164456310|dbj|BAF97658.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 80/111 (72%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+AAIY  L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDAAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|49354925|gb|AAT65185.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 79/101 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|45738080|gb|AAS75837.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Kentucky]
          Length = 104

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 79/104 (75%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|18034055|gb|AAL57340.1|AF397169_1 GyrA [Proteus mirabilis]
          Length = 98

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 78/98 (79%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R 
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|56550031|gb|AAS75324.2| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 112

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 80/111 (72%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK A+   + MG YHPHG++AIYD + RMAQ WS+R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TE RL   A  ++ D+ ++TVDF+PNYDG   EPV+L +R P +L+NG GG
Sbjct: 62  TEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGG 112


>gi|134141865|gb|ABO61327.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/127 (51%), Positives = 92/127 (72%), Gaps = 3/127 (2%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           QGN+G+ D DP   AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR 
Sbjct: 61  QGNWGAPD-DPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARL 119

Query: 172 PNVLVNG 178
           P++L+NG
Sbjct: 120 PHILLNG 126


>gi|94471628|gb|ABF21080.1| DNA gyrase subunit A [Acholeplasma multilocale]
          Length = 345

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 197/404 (48%), Gaps = 61/404 (15%)

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL RL GL R+ I  E+N +   I     ++S +     ++K++L  +  +    RRT  
Sbjct: 1   RLQRLVGLEREKIAEEMNQIQSRIDYLTQLISDKEEQNRVLKEQLSDIALKYGDDRRTET 60

Query: 521 V-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           + E +++++DE+ I     ++ +S  GY++RV    +R Q+RGG+G S V   ++D ++ 
Sbjct: 61  INESVMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGIS-VNSSNDDPISI 119

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPE 638
             +      VLFF++ G V++ K + +   S  +RG  ++N L+ L   ++IT I+P   
Sbjct: 120 ATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTPEDKITAILPMRN 179

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           ++  +   Y+ F T+ G ++R  +S F  IN++GKIA+ L   D++++V   T E+ + +
Sbjct: 180 EKEKFK--YLTFVTEAGMIKRTDISLFDSINQNGKIAITLKDDDQLVTVMPTTGEDTVFI 237

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             K G+ +R     +R  + R + GV+GI L + D      IV+ A   Y          
Sbjct: 238 ANKSGKVIRINEDIVRPLS-RTATGVKGIKLDEDD------IVVGAVTSY---------- 280

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                      E IT                            T+S KG  K+T+  ++R
Sbjct: 281 ---------GIEAIT----------------------------TISSKGNFKKTALDEYR 303

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           IS R+GKGI+  ++++  + G   A+    + D I+++S  G L
Sbjct: 304 ISGRNGKGIKVMNLNE--KTGDFKAIIAARETDLILIISSDGNL 345


>gi|169787152|gb|ACA80015.1| GyrA [Brenneria alni]
          Length = 163

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 72/156 (46%), Positives = 103/156 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++
Sbjct: 5   EGRYYLTEQQAQAILDLRLQKLTGLEHERLLDEYKELLAQIAELLYILESPERLMEVIRE 64

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 65  ELEAIKAQYSDERRTEITVNTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 124

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +G+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 125 RGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 160


>gi|124108787|gb|ABM90970.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 74/93 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 93


>gi|164456288|dbj|BAF97647.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456294|dbj|BAF97650.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456306|dbj|BAF97656.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456312|dbj|BAF97659.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 80/111 (72%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+ AIY+ L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDLAIYNTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|313192242|emb|CBY05929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  137 bits (346), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/100 (62%), Positives = 79/100 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ Q
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNKQ 102


>gi|164456324|dbj|BAF97665.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 80/111 (72%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+ AIY+ L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDLAIYETLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|290578701|gb|ADD51247.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/119 (52%), Positives = 92/119 (77%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            E+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  AELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|49354928|gb|AAT65186.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 78/101 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|52699667|gb|AAU86937.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 98

 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + R+AQ +S+R 
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|164456290|dbj|BAF97648.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456300|dbj|BAF97653.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456326|dbj|BAF97666.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 79/111 (71%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDLAIYHTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|313192286|emb|CBY05951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/98 (62%), Positives = 78/98 (79%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 8   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 67

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           GD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 68  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 105


>gi|313192284|emb|CBY05950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 79/98 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 9   LGMDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 68

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 69  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGN 106


>gi|164456286|dbj|BAF97646.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 79/111 (71%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDLAIYGTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|321268206|gb|ADW78911.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|224178753|ref|XP_002198897.1| PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603,
           partial [Taeniopygia guttata]
          Length = 424

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 177/362 (48%), Gaps = 52/362 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           Q+ +L YA  VIL RA+P++ DGLKPV RRIL  M  +    + ++ K A I G  M ++
Sbjct: 52  QSWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKLLD---DGRFNKVANIVGNTM-QF 107

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+IY+AL ++ Q    + LL+E QGN+G ++ G   AA RY E RL   + F LD
Sbjct: 108 HPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYIEARL---SQFALD 160

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                 V + P           L A           GIAVG+++ I  HN  E++D  ++
Sbjct: 161 ------VVYNPKV-----TEWTLSAE----------GIAVGLSSKILPHNFNEIIDAAIS 199

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +      L         PDF TG  I + R      Y  G    V++  + IEK   D 
Sbjct: 200 YLRGEPFTL--------YPDFFTGGSIDVSR------YNDGERGGVVKIRAKIEKI--DN 243

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + + +TEIPY    A ++E I +  +E   + I  + D +  Q   V++ L  G S+D  
Sbjct: 244 KTLAITEIPYGKTTATLIESIVK-AQEAGKIKIRSVVDNT-AQTANVIVYLLPGTSSDKT 301

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           ++ LY +T  +   S N   ++  KP    +  +L+  V    +++ +  +  L + R++
Sbjct: 302 IDALYAFTDCEVSVSPNCCVISDNKPHFIGVSDVLRHNVDRTRDILGQELRIQLGEVREQ 361

Query: 384 AH 385
            H
Sbjct: 362 LH 363


>gi|29165273|gb|AAO65577.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 100

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/100 (62%), Positives = 77/100 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|313192250|emb|CBY05933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/97 (62%), Positives = 76/97 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|60651670|gb|AAX32846.1| GyrA [Riemerella anatipestifer]
          Length = 105

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/104 (57%), Positives = 79/104 (75%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +GM ++GV  NKKY+  AR  G+V+GKYHPHG+ ++YD + RMAQ WSLR   ++GQGNF
Sbjct: 1   YGMYRLGVFSNKKYLTSARNVGDVLGKYHPHGDRSVYDHMVRMAQPWSLRYPQVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           GS+DGDPPAA RYTE RL+K +  +L DL K+T DF+ N+D S 
Sbjct: 61  GSMDGDPPAAMRYTEARLKKISDEILSDLDKETADFQNNFDDSL 104


>gi|10241567|emb|CAC09567.1| DNA gyrase subunit A [Bacteroides vulgatus]
          Length = 98

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 82/98 (83%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHR IL+GM+++G   +K Y K ARI 
Sbjct: 1   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRSILYGMIELGNTSDKAYKKSARIV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGN
Sbjct: 61  GEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGN 98


>gi|164456316|dbj|BAF97661.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/111 (54%), Positives = 79/111 (71%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDLAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|321268262|gb|ADW78939.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 238

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 46  QHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  G
Sbjct: 156 GDSAAASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVI 206
           IAVG++T +  HN  E++D  + ++
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKIL 238


>gi|255519785|ref|ZP_05387022.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 288

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 153/310 (49%), Gaps = 59/310 (19%)

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  ++   E     ++ Y
Sbjct: 2   TLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSY 58

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           + F TKHG V+R  LS F +I +SG  A++L   DE++SV+      ++++ TK GQ + 
Sbjct: 59  LFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIY 118

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           FP   IRV  GR + GVRGI L + D+VI M +                           
Sbjct: 119 FPEENIRVM-GRTAAGVRGIRLREDDEVIGMEV--------------------------- 150

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                  L++D  V                   L V+EKG+GK+T +  + + NR G G+
Sbjct: 151 -------LEDDEKV-------------------LVVTEKGYGKQTPASQYPLRNRGGMGV 184

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  GV +    +
Sbjct: 185 KTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDE 242

Query: 888 DERVVSVERI 897
           DE+V +V ++
Sbjct: 243 DEKVATVAKV 252


>gi|321268228|gb|ADW78922.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268230|gb|ADW78923.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K 
Sbjct: 1   GEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 60

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           +  ++ D+ K+TVDF+ N+D +  EP V+  + P +L+N
Sbjct: 61  SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLIN 99


>gi|321268214|gb|ADW78915.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268216|gb|ADW78916.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268218|gb|ADW78917.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268222|gb|ADW78919.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268226|gb|ADW78921.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|24216892|ref|NP_714373.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659166|ref|YP_003252.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198273|gb|AAN51391.1|AE011572_13 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602412|gb|AAS71889.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 462

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 55/372 (14%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVKCARIS 78
           D++ +    Y+  V   RAIP   DGLKPV RRIL+ M      WN     +Y K  +++
Sbjct: 20  DQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAM------WNSDARNRYTKTVKVA 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSL--RLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           G  MG YHPHG+ +I DAL++MAQD++    + L+ G+G FG V D    A+ RYTE +L
Sbjct: 74  GLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKL 132

Query: 136 QKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
                  + DLG       +D+  NYD +  EP+    + P VL+N   GIA G    IP
Sbjct: 133 SD----FVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIP 188

Query: 192 THNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            H L ++V   +  + +   + L    +     DF  G V +  T   N         + 
Sbjct: 189 GHRLADIVKSQINYLKSKKPLSLKPWYK-----DF-NGEVKMAETETGN---------IT 233

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              +   K  GD   + +T+ P   N+  ++  + +++ E++   + D  D S  Q +RV
Sbjct: 234 MSTTFAFKWEGD--TLYLTDSPMNWNREKVISLLDDIL-ERKDSWLKDYVDYSS-QTFRV 289

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALNG----YKPERFTLIGILKAFVAF 364
            ++ K+G   S   I+  L+    +Q+L ++N++  +G    +KPE      I+K F  F
Sbjct: 290 ELQYKKGEKPSQKEIM-ALFNKEDVQTL-AMNVITYDGKLKNFKPEE-----IIKRFCDF 342

Query: 365 REEVVVRRTKYL 376
           R+  ++RR K L
Sbjct: 343 RKTHLIRRFKRL 354


>gi|29165271|gb|AAO65576.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 101

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 78/101 (77%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           S+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 101


>gi|195956954|gb|ACG59236.1| GyrA [Acinetobacter baumannii]
          Length = 104

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/100 (64%), Positives = 77/100 (77%)

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL D
Sbjct: 5   HPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLAD 64

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           L KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVG
Sbjct: 65  LEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVG 104


>gi|10802663|gb|AAG23554.1|AF244605_1 DNA gyrase subunit A [Carboxydothermus hydrogenoformans]
          Length = 160

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 108/180 (60%), Gaps = 26/180 (14%)

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELKR A+  V+LNQL+++T LQ  F + M+AL   +P    L  IL  
Sbjct: 6   DESDRKGMRIVIELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFY 65

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +++VV RRT+Y LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR  LM R
Sbjct: 66  YLEHQKDVVTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSR 125

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E Q +AIL++RL RLT L R+ I  E   L
Sbjct: 126 FG--------------------------LTEKQAQAILDMRLQRLTALEREKIDEEYREL 159


>gi|313192252|emb|CBY05934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  135 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGEYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGN 101


>gi|321268282|gb|ADW78949.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 46  QHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  G
Sbjct: 156 GDSAAASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVI 206
           IAVG++T +  HN  E++D  + ++
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKIL 238


>gi|321268266|gb|ADW78941.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268268|gb|ADW78942.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268270|gb|ADW78943.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268272|gb|ADW78944.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268274|gb|ADW78945.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268276|gb|ADW78946.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268278|gb|ADW78947.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268284|gb|ADW78950.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 262

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 46  QHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  G
Sbjct: 156 GDSAAASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVI 206
           IAVG++T +  HN  E++D  + ++
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKIL 238


>gi|185178912|ref|ZP_02964680.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|184209172|gb|EDU06215.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
          Length = 126

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/122 (50%), Positives = 86/122 (70%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y 
Sbjct: 5   QQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYTE
Sbjct: 65  KSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYTE 124

Query: 133 CR 134
            R
Sbjct: 125 TR 126


>gi|321268264|gb|ADW78940.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 261

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 46  QHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  G
Sbjct: 156 GDSAAASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVI 206
           IAVG++T +  HN  E++D  + ++
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKIL 238


>gi|321268212|gb|ADW78914.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|321268280|gb|ADW78948.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 119/205 (58%), Gaps = 13/205 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + +
Sbjct: 46  QHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKE 103

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  
Sbjct: 104 LD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILT 155

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  G
Sbjct: 156 GDSAAASRYIEARLSKFALEVL--YSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEG 213

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVI 206
           IAVG++T +  HN  E++D  + ++
Sbjct: 214 IAVGLSTKVLPHNFNELIDASIKIL 238


>gi|321268224|gb|ADW78920.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|164456296|dbj|BAF97651.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456298|dbj|BAF97652.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456304|dbj|BAF97655.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456322|dbj|BAF97664.1| DNA gyrase subunit A [Corynebacterium mastitidis]
          Length = 112

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/111 (54%), Positives = 79/111 (71%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA RY
Sbjct: 2   YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           TEC+L   A  ++ D+ ++ VDF PNYD    EP VL +R PN+L+NG GG
Sbjct: 62  TECKLTPLAMEMVRDIRENAVDFSPNYDDKTMEPDVLPSRVPNLLMNGSGG 112


>gi|29165298|gb|AAO65582.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 99

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 99


>gi|313192276|emb|CBY05946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 76/97 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++WNK Y K AR+ G+V G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 10  LGMDWNKAYKKSARVVGDVFGEYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 69

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 70  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 106


>gi|168997711|gb|ACA42553.1| DNA gyrase subunit A [Escherichia coli]
          Length = 89

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 73/89 (82%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ
Sbjct: 1   PDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 61  PFSLRYMLVDGQGNFGSIDGDSAAAMRYT 89


>gi|3044112|gb|AAC13292.1| DNA gyrase subunit A [Moraxella catarrhalis]
          Length = 107

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/106 (58%), Positives = 77/106 (72%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  A
Sbjct: 2   WNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           A RYTE R+ K AH LL DL K+T     NYDG+ Q P V+  + P
Sbjct: 62  AMRYTEVRMAKLAHELLADLEKETGRLGANYDGTEQIPAVMPTKIP 107


>gi|124108797|gb|ABM90975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108801|gb|ABM90977.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 74/93 (79%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|29165281|gb|AAO65581.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Kottbus]
          Length = 100

 Score =  134 bits (338), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/100 (61%), Positives = 77/100 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|218662255|ref|ZP_03518185.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 125

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 70/83 (84%)

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
           YDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRIAS
Sbjct: 1   YDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIAS 60

Query: 875 RATKGVVIFSTAKDERVVSVERI 897
           RATKGV IFSTAKDE+VVSVERI
Sbjct: 61  RATKGVTIFSTAKDEKVVSVERI 83


>gi|313192256|emb|CBY05936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 3   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           GD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|124108773|gb|ABM90963.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108775|gb|ABM90964.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108777|gb|ABM90965.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108779|gb|ABM90966.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108781|gb|ABM90967.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108783|gb|ABM90968.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 73/93 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|124108795|gb|ABM90974.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 73/93 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|5739485|gb|AAD50498.1|AF174426_2 DNA topoisomerase IV ParC subunit [Acholeplasma laidlawii]
          Length = 123

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 83/111 (74%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M QMG+ +NK Y 
Sbjct: 13  EEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSYK 72

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++  GN GS+DGD
Sbjct: 73  KSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGD 123


>gi|10241565|emb|CAC09565.1| DNA gyrase subunit A [Parabacteroides distasonis]
          Length = 97

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 80/97 (82%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K ARI G
Sbjct: 1   NIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           EV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGN
Sbjct: 61  EVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGN 97


>gi|10241569|emb|CAC09566.1| DNA gyrase subunit A [Bacteroides uniformis]
          Length = 93

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 78/93 (83%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM++SY+ Y+++VI+ RA+PD+++G KPVHRRILFGMM +G   +K Y K AR+ GEV+G
Sbjct: 1   EMKSSYIDYSMSVIVSRALPDVKNGFKPVHRRILFGMMGLGNTSDKPYKKSARVVGEVLG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           KYHPHG++++Y AL RMAQ W++R +L++GQGN
Sbjct: 61  KYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGN 93


>gi|60651666|gb|AAX32844.1| GyrA [Riemerella anatipestifer]
          Length = 83

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/82 (68%), Positives = 69/82 (84%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+GM  +GV  NKKY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   
Sbjct: 1   PVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQ 60

Query: 111 IEGQGNFGSVDGDPPAAERYTE 132
           ++GQGNFGS+DGDPPAA RYTE
Sbjct: 61  VDGQGNFGSMDGDPPAAMRYTE 82


>gi|260667425|gb|ACX47923.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 98

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 76/98 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 60

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 98


>gi|39980706|gb|AAR33047.1| gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 101

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 77/101 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 101


>gi|33322684|gb|AAQ07076.1|AF496389_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 103

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 80/102 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PAA RYTE R
Sbjct: 2   ARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEAR 61

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           + K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LV
Sbjct: 62  MSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLV 103


>gi|270719656|ref|ZP_06223336.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270315398|gb|EFA27669.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 181

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 109/179 (60%), Gaps = 5/179 (2%)

Query: 404 IRFSPNPETARRELMQRSWN-ASDIKDLIDLI---DDSSYTIGSDGTMY-LSEVQTRAIL 458
           IR S N E A   +  RSW   +DI +L+D+    D+    +G  G  Y LS  Q  AIL
Sbjct: 1   IRNSKNREEAATAISSRSWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 60

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           ELRL RLTG+  +++  E   L ++I + L ILSS  RL+ +I++EL  VK +    R T
Sbjct: 61  ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 120

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
            I     D++ ED I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+
Sbjct: 121 EITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFI 179


>gi|321268210|gb|ADW78913.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 98

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 77/97 (79%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  +
Sbjct: 1   GKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEI 60

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           + D+ K+TVDF+ N+D +  EP V+  + P +L+NGG
Sbjct: 61  MADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGG 97


>gi|1536962|emb|CAA69173.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 102

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/100 (59%), Positives = 80/100 (80%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDF 100


>gi|312192225|gb|ADQ43809.1| topoisomerase IV subunit A [Aerococcus sanguinicola]
          Length = 116

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 80/116 (68%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M   G   +  + K A+  G V+G YHPHG++++YDA+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYAMFVDGNTSSHNFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           QDW  R +LIE  GN GS+DGDP AA RYTE RL K A  LL DL K TV+   N+
Sbjct: 61  QDWKNREVLIEMHGNNGSMDGDPAAAMRYTEARLSKIADELLADLDKQTVETMLNF 116


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 68/302 (22%)

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           RLPI          +N L +++ E I+T++   +  S  +  Y+VFATKHG V+R+KLS+
Sbjct: 337 RLPI----------VNALEIDKDEMISTMIAVKDLSSEED--YLVFATKHGTVKRSKLSN 384

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +IN++GKIA+     DE+++V       +I++ TK    +RF  S +R   GR + GV
Sbjct: 385 FSRINKNGKIAINFKEGDELIAVRLTDGTKEIIIGTKHASLIRFDESKLRPL-GRTAAGV 443

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +GI+L + D+VI + +    D D  + I                                
Sbjct: 444 KGITLREDDEVIGLDVT---DEDQQDEI-------------------------------- 468

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                           L V+EKG+GKRTS+  +RISNR GKGI+   +++ N  G LV +
Sbjct: 469 ----------------LIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKN--GNLVCI 510

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEI 902
             VN ++ +++V++ G +IR+ V +I    R+ +GV +     ++ V +V ++   E+EI
Sbjct: 511 TTVNGDEDLMIVTNSGVIIRLHVADISQNGRSAQGVRLIRLGDNQHVATVAKVEPDENEI 570

Query: 903 VD 904
            +
Sbjct: 571 AE 572



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 107/263 (40%), Gaps = 33/263 (12%)

Query: 490 ILSSRSRLLGIIKQELLSVKD-ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL  R ++L + K  L  V   E+D       +  + D+  E     ED +V  +  G V
Sbjct: 323 ILPLRGKILNVEKARLPIVNALEIDKDEMISTMIAVKDLSSE-----EDYLVFATKHGTV 377

Query: 549 KRVPLSVYRAQRRGGK-------GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           KR  LS +    + GK       G   + +R  D   ++ I + H S++ F        E
Sbjct: 378 KRSKLSNFSRINKNGKIAINFKEGDELIAVRLTDGTKEIIIGTKHASLIRFD-------E 430

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              R     P  R  A +  ++L + + +  +    ED+       ++  T+ G  +R  
Sbjct: 431 SKLR-----PLGRTAAGVKGITLREDDEVIGLDVTDEDQQDE----ILIVTEKGYGKRTS 481

Query: 662 LSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
              +   NR G   K A   +    ++ + T   + D+++ T  G  +R  ++ I    G
Sbjct: 482 ADQYRISNRGGKGIKTATLTEKNGNLVCITTVNGDEDLMIVTNSGVIIRLHVADISQ-NG 540

Query: 719 RNSVGVRGISLAKGDQVISMAIV 741
           R++ GVR I L     V ++A V
Sbjct: 541 RSAQGVRLIRLGDNQHVATVAKV 563



 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIV 583
           LD+ DED   ++D ++ V+  GY KR     YR   RGGKG ++  +      +  +  V
Sbjct: 457 LDVTDED---QQDEILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKNGNLVCITTV 513

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +    ++  ++ G + +  V  +      A+G   + ++ L   + + T+     DE+
Sbjct: 514 NGDEDLMIVTNSGVIIRLHVADISQNGRSAQG---VRLIRLGDNQHVATVAKVEPDEN 568


>gi|313192254|emb|CBY05935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           GD  AA RYTE RL K AH L+ DL K+TVDF   YDG
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVEQYDG 99


>gi|227518802|ref|ZP_03948851.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
 gi|227073797|gb|EEI11760.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
          Length = 465

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 240/483 (49%), Gaps = 52/483 (10%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R+ V++ R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++         
Sbjct: 1   RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------- 51

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  +L+ D ++T          E Q  AI+ L+L RLT     D++ E  +L  +I
Sbjct: 52  -------NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQI 94

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTV 542
            E L+IL++   L  ++K+EL  VK +   PR T+I E + +++ E  ++  +ED+VVTV
Sbjct: 95  AELLNILNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTV 154

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    
Sbjct: 155 THEGYIKRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRP 209

Query: 603 VWRLPIGSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V  LP    +  G+ +   IL+L   E I  + P+ E   +      VF TK G +++ K
Sbjct: 210 VHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTK 266

Query: 662 LSDFIQINRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIR 714
           ++DF +  R+ K      MKL S +DEI +V     ++  D+ L +  G  +R+P+  + 
Sbjct: 267 MADF-EPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVP 325

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           V  G  + GV+ ++L + D V++  +++H++ D    I  +      +R+++ +  ++  
Sbjct: 326 V-VGSKAAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGR 381

Query: 775 LKNDSSVEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            K    V   + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D
Sbjct: 382 AKRGLMVLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVID 441

Query: 832 VSK 834
             K
Sbjct: 442 EQK 444



 Score = 38.1 bits (87), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850
           +E  ++TV+ +G+ KR+S             IR+   SK  EIG      L+    VN  
Sbjct: 147 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 193

Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899
           D ++LV++KG +I  PV+E+       I    ++   I + A DE +++V   +E
Sbjct: 194 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 246


>gi|313192258|emb|CBY05937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 76/98 (77%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGEYHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           GD  AA RYTE RL K AH L+ DL K+TVDF   YDG
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKYDG 99


>gi|13508941|emb|CAC11123.2| DNA gyrase subunit A [Bacteroides ovatus]
          Length = 92

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           YHPHG++++Y A+ RMAQ+W++R  L++GQGN
Sbjct: 61  YHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGN 92


>gi|15593976|emb|CAC11124.2| DNA gyrase subunit A [Bacteroides thetaiotaomicron]
          Length = 92

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           YHPHG++++Y A+ RMAQ+W++R  L++GQGN
Sbjct: 61  YHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGN 92


>gi|116327081|ref|YP_796801.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332262|ref|YP_801980.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119825|gb|ABJ77868.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125951|gb|ABJ77222.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 181/372 (48%), Gaps = 55/372 (14%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVKCARIS 78
           D++ +    Y+  V   RAIP   DGLKPV RRIL+ M      WN     +Y K  +++
Sbjct: 20  DQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAM------WNSDARNRYTKTVKVA 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSL--RLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           G  MG YHPHG+ +I DAL++MAQD++    + L+ G+G FG V D    A+ RYTE +L
Sbjct: 74  GLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKL 132

Query: 136 QKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
                  + DLG       +D+  NYD +  EP+    + P VL+N   GIA G    IP
Sbjct: 133 SD----FVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIP 188

Query: 192 THNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            H L ++V   +  +     + L    +     DF  G V +  T   N         + 
Sbjct: 189 GHRLADIVKSQINYLKTKKPLSLKPWYK-----DF-NGEVKMAETETGN---------IT 233

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              +   K  GD   + +T+ P   N+  ++  + +++ E++   + +  D S  Q +R+
Sbjct: 234 MSTTFAFKWEGD--ILYLTDSPMNWNREKVISLLDDIL-ERKDSWLKEYVDYSS-QTFRI 289

Query: 311 VIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALNG----YKPERFTLIGILKAFVAF 364
            ++ K+G   S   I+  L+    +Q+L ++N++  +G    +KPE      I+K F  F
Sbjct: 290 ELQYKKGEKPSQKEIM-ALFNKEDIQTL-AMNVITYDGKLKNFKPEE-----IIKRFCDF 342

Query: 365 REEVVVRRTKYL 376
           R+  ++RR K L
Sbjct: 343 RKTHLIRRFKRL 354


>gi|83596418|gb|ABC25548.1| GyrA [Streptococcus pneumoniae]
          Length = 97

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 77/97 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A
Sbjct: 1   DVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIA 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
             +L D+ K+TVDF  NYD + +EP+VL AR+PN+LV
Sbjct: 61  LEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLV 97


>gi|15787866|dbj|BAB68536.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 131

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/123 (51%), Positives = 88/123 (71%), Gaps = 3/123 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 8   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 67

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 68  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 126

Query: 144 DDL 146
            +L
Sbjct: 127 SEL 129


>gi|144225422|emb|CAM84042.1| DNA gyrase B [Legionella dresdenensis]
          Length = 100

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD  AA RYTE
Sbjct: 2   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDMAAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
            R+ K AH LL DL K+TVDF PNYD +   P+VL +R
Sbjct: 62  VRMSKVAHALLADLEKETVDFTPNYDETEFAPIVLPSR 99


>gi|190589934|gb|ACE79226.1| DNA gyrase [Pseudomonas aeruginosa]
 gi|190589936|gb|ACE79227.1| DNA gyrase [Pseudomonas aeruginosa]
          Length = 98

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 76/98 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+
Sbjct: 61  KLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNL 98


>gi|313192270|emb|CBY05943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 74/97 (76%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GD  AA RYTE RL K AH L+ DL K+TVDF   YD
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFLGYYD 98


>gi|313192274|emb|CBY05945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 77/98 (78%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKY+PHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 9   RIGHDWNKAYKKSARVVGDVIGKYNPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 68

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           GD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 69  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 106


>gi|164604813|gb|ABY61967.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 79/104 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDFAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVL 104


>gi|164604815|gb|ABY61968.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 79/104 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVL 104


>gi|313192280|emb|CBY05948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 8   RIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 67

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           GD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 68  GDSAAAMRYTEIRLAKIAHGLMADLEKETVDF 99


>gi|313192238|emb|CBY05927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|313192246|emb|CBY05931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 96


>gi|161339335|gb|ABX64408.1| gyrase [Streptococcus suis]
 gi|164604811|gb|ABY61966.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  130 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 79/104 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVL 104


>gi|17932925|emb|CAC84235.1| gyrase A [Stenotrophomonas maltophilia]
          Length = 100

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NK Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA
Sbjct: 6   NKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAA 65

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
            RYTE R+ + AH L+ D+ K+TVDF+PNYD
Sbjct: 66  MRYTEARMSRLAHELMADIDKETVDFQPNYD 96


>gi|291533756|emb|CBL06869.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 159/324 (49%), Gaps = 60/324 (18%)

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           ++ED+V ++ I STH ++LFF++ G VY+ K + +P     A+G A++N+L L + E IT
Sbjct: 4   KEEDYVENMIITSTHNTILFFTNKGLVYQLKGYEIPESGRTAKGTAIVNLLPLAKEETIT 63

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETC 690
            I+P  E      + Y+  AT+HG V++  LS+F     ++G IA+ L   DE++ V+  
Sbjct: 64  AIIPIKE---FSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGVKLT 120

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
                I++ T+ G  + F    +R   GR + GV GI L   D VI M            
Sbjct: 121 DGNRQIIIGTRDGMSICFNEQDVRPM-GRTARGVIGIKLKGEDTVIGMD----------- 168

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                            NI ++ C+        +LTV+E GFGK
Sbjct: 169 ---------------------------------NIRDD-CE--------VLTVTEHGFGK 186

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           RT++ ++R   R G G+    V++  + G ++ +  V+   + +L+S +G +IR  + E+
Sbjct: 187 RTATSEYRTQTRGGIGLINIKVTE--KTGFVIGIKVVDSQQEFMLISTEGIVIRSNIEEV 244

Query: 871 RIASRATKGVVIFSTAKDERVVSV 894
            +  R T+GV + +   +++V ++
Sbjct: 245 SVIGRNTQGVKMMNMDNNDKVAAL 268



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 534 VREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV-VMRDEDFVTDLFIVSTHTSVLF 591
           +R+D  V+TV+  G+ KR   S YR Q RGG G   + V     FV  + +V +    + 
Sbjct: 170 IRDDCEVLTVTEHGFGKRTATSEYRTQTRGGIGLINIKVTEKTGFVIGIKVVDSQQEFML 229

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            S+ G V +  +  + +     +G   + +++++  +++  +  F
Sbjct: 230 ISTEGIVIRSNIEEVSVIGRNTQG---VKMMNMDNNDKVAALAAF 271


>gi|313192240|emb|CBY05928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 93


>gi|29165277|gb|AAO65579.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Reading]
          Length = 95

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 93


>gi|52630911|gb|AAU84919.1| DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 118

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/119 (53%), Positives = 85/119 (71%), Gaps = 3/119 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 1   DGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSY 60

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           R  LI+GQGN+G+ D DP   AA RYTE RL K +  LL +LG  TVD+ PN+DG+ QE
Sbjct: 61  RYPLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQE 118


>gi|124108729|gb|ABM90941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVGGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|16041050|dbj|BAB69702.1| topoisomerase IV [Salmonella paratyphi]
          Length = 126

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/120 (51%), Positives = 87/120 (72%), Gaps = 3/120 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 8   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 67

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 68  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 126


>gi|61654895|gb|AAX48942.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654897|gb|AAX48943.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654899|gb|AAX48944.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654907|gb|AAX48948.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/119 (51%), Positives = 86/119 (72%), Gaps = 3/119 (2%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 62  -DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNG 119


>gi|18389162|gb|AAL67640.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389164|gb|AAL67641.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389166|gb|AAL67642.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389168|gb|AAL67643.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389170|gb|AAL67644.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389172|gb|AAL67645.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389174|gb|AAL67646.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389176|gb|AAL67647.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389178|gb|AAL67648.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 120

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/119 (51%), Positives = 86/119 (72%), Gaps = 3/119 (2%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 1   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 GDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 61  -DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNG 118


>gi|238652845|emb|CAR63882.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 78/103 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHGN A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|124108707|gb|ABM90930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|124108693|gb|ABM90923.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 95

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 95


>gi|124108745|gb|ABM90949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLKKETVDF 91


>gi|2281046|emb|CAB10849.1| DNA Gyrase subunit A [Mycoplasma hominis]
          Length = 90

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 74/90 (82%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD RDGLKPVHRRIL+GM ++G+ +   + K ARI G+V+GKYHPHG++++Y+A+
Sbjct: 1   VSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSARIVGDVLGKYHPHGDSSVYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            RMAQD+SLR  LI+G GNFGSVDGD  AA
Sbjct: 61  VRMAQDFSLRYPLIDGHGNFGSVDGDEAAA 90


>gi|21666246|gb|AAM73627.1|AF363611_1 DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 116

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/117 (52%), Positives = 84/117 (71%), Gaps = 3/117 (2%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R 
Sbjct: 1   LKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            LI+GQGN+G+ D DP   AA RYTE RL K +  LL +LG  TVD+ PN+DG+ QE
Sbjct: 61  PLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQE 116


>gi|558547|emb|CAA57655.1| DNA Gyrase A subunit [Acinetobacter baumannii]
 gi|197725597|gb|ACH73007.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 95

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 74/94 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 2   GDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKL 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           AH LL DL KDTVD+  NYDGS + P VL  R P
Sbjct: 62  AHELLADLEKDTVDWEDNYDGSERIPEVLPTRVP 95


>gi|124108715|gb|ABM90934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108733|gb|ABM90943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|110590001|gb|ABG77447.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 86/121 (71%), Gaps = 3/121 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLP 119

Query: 169 A 169
           A
Sbjct: 120 A 120


>gi|313192262|emb|CBY05939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 75/97 (77%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GD  AA RYTE RL K AH L+ DL K+TVDF  N D
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNND 98


>gi|124108755|gb|ABM90954.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|321268208|gb|ADW78912.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 95

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 75/95 (78%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++
Sbjct: 1   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 60

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 95


>gi|124108743|gb|ABM90948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  129 bits (324), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|19908359|gb|AAL99230.1| gyrase [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 92

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDN 91


>gi|124108739|gb|ABM90946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLKKETVDF 92


>gi|124108705|gb|ABM90929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|61654901|gb|AAX48945.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654903|gb|AAX48946.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654905|gb|AAX48947.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/119 (51%), Positives = 85/119 (71%), Gaps = 3/119 (2%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 62  -DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNG 119


>gi|124108711|gb|ABM90932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|124108723|gb|ABM90938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108767|gb|ABM90960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|238652881|emb|CAX46372.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 79/104 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|124108735|gb|ABM90944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 92


>gi|124108685|gb|ABM90919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108737|gb|ABM90945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   IGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|29165275|gb|AAO65578.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Brandenburg]
          Length = 95

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 73/91 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 93


>gi|124108691|gb|ABM90922.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108695|gb|ABM90924.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108719|gb|ABM90936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108731|gb|ABM90942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|184161295|gb|ACC68679.1| ParC [Escherichia coli]
          Length = 128

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 3/120 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 9   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 68

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 69  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 127


>gi|124108689|gb|ABM90921.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108697|gb|ABM90925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108699|gb|ABM90926.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|124108721|gb|ABM90937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|259089989|gb|ACV91835.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 98

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 76/98 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  +
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 98


>gi|110589997|gb|ABG77445.1| topoisomerase IV subunit [Shigella flexneri]
 gi|110589999|gb|ABG77446.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590003|gb|ABG77448.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590005|gb|ABG77449.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590007|gb|ABG77450.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590009|gb|ABG77451.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590011|gb|ABG77452.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590013|gb|ABG77453.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLP 119

Query: 169 A 169
           A
Sbjct: 120 A 120


>gi|313192264|emb|CBY05940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           GD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDF 93


>gi|124108703|gb|ABM90928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 91


>gi|238652843|emb|CAR63881.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 79/103 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+AA+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDAAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PA+ RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|21326981|gb|AAM48111.1|AF500124_1 gyrase [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 97

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           +DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 94


>gi|124108747|gb|ABM90950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108753|gb|ABM90953.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108757|gb|ABM90955.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108761|gb|ABM90957.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDF 92


>gi|172073098|gb|ACB71406.1| ParC [Escherichia coli]
          Length = 126

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 3/120 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 8   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 67

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 68  HPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 126


>gi|172073100|gb|ACB71407.1| ParC [Escherichia coli]
          Length = 130

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 3/120 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 11  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNTSAKFKKSARTVGDVLGKY 70

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 71  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 129


>gi|21326979|gb|AAM48110.1|AF500123_1 gyrase [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 96

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 73/94 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           +DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 94


>gi|172073096|gb|ACB71405.1| ParC [Escherichia coli]
          Length = 130

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 3/120 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 11  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 70

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 71  HPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 129


>gi|313192248|emb|CBY05932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 94


>gi|238652883|emb|CAX46373.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 78/104 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           VDGD PA  RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  VDGDSPAVMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|171850797|emb|CAP11081.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            LL++G GNFGSVDGD PAA RYTE ++ K
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSK 90


>gi|183220091|ref|YP_001838087.1| DNA gyrase/topoisomerase subunit A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778513|gb|ABZ96811.1| DNA gyrase/topoisomerase, type IV, subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 461

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 173/366 (47%), Gaps = 43/366 (11%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVKCARIS 78
           D++ +    Y+  V   RAIP   DGLKPV RRIL+ M      WN     ++ K  +++
Sbjct: 19  DQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAM------WNSDARNRHTKTVKVA 72

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSL--RLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           G  MG YHPHG+ +I DAL++MAQD++      L+ G+G FG V D +  A+ RYTE +L
Sbjct: 73  GLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASPRYTEVKL 131

Query: 136 QKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              A     DLG       +D+  NYD +  EP+    + P VL+N   GIA G    IP
Sbjct: 132 SDFAK----DLGFFESLPDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQGIATGFRCFIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H L +V++  V  +               G          G  G         G+ V+ 
Sbjct: 188 AHKLSDVIESQVTYLKT-------------GKPKKITPWYKGYGGEVKLSKNDNGNTVMS 234

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                +K  G   ++ + + P   N+  ++  + +L+ E++   + D  D S  Q +++ 
Sbjct: 235 TTFGFKKEDG---KLYLVDSPMNWNREKVVNYLDDLI-ERKDNWLKDYVDHSS-QTFKIE 289

Query: 312 IELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +  K+G   ++  + +L+   + + L ++N++   G K   F    I+K F  FR+  ++
Sbjct: 290 LIAKKGEEPSEKEIKELFTKENNEVL-TINVITHEG-KLRNFGPEEIIKRFCDFRKTHLI 347

Query: 371 RRTKYL 376
           RR K L
Sbjct: 348 RRFKRL 353


>gi|124108727|gb|ABM90940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/87 (64%), Positives = 70/87 (80%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDF 153
           A RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDF 87


>gi|189910211|ref|YP_001961766.1| DNA topoisomerase subunit A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774887|gb|ABZ93188.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 456

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 173/366 (47%), Gaps = 43/366 (11%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN----KKYVKCARIS 78
           D++ +    Y+  V   RAIP   DGLKPV RRIL+ M      WN     ++ K  +++
Sbjct: 14  DQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAM------WNSDARNRHTKTVKVA 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSL--RLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           G  MG YHPHG+ +I DAL++MAQD++      L+ G+G FG V D +  A+ RYTE +L
Sbjct: 68  GLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASPRYTEVKL 126

Query: 136 QKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              A     DLG       +D+  NYD +  EP+    + P VL+N   GIA G    IP
Sbjct: 127 SDFAK----DLGFFESLPDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQGIATGFRCFIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H L +V++  V  +               G          G  G         G+ V+ 
Sbjct: 183 AHKLSDVIESQVTYLKT-------------GKPKKITPWYKGYGGEVKLSKNDNGNTVMS 229

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                +K  G   ++ + + P   N+  ++  + +L+ E++   + D  D S  Q +++ 
Sbjct: 230 TTFGFKKEDG---KLYLVDSPMNWNREKVVNYLDDLI-ERKDNWLKDYVDHSS-QTFKIE 284

Query: 312 IELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +  K+G   ++  + +L+   + + L ++N++   G K   F    I+K F  FR+  ++
Sbjct: 285 LIAKKGEEPSEKEIKELFTKENNEVL-TINVITHEG-KLRNFGPEEIIKRFCDFRKTHLI 342

Query: 371 RRTKYL 376
           RR K L
Sbjct: 343 RRFKRL 348


>gi|4566382|gb|AAD23325.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
 gi|4566384|gb|AAD23326.1| DNA gyrase subunit A [Streptococcus oralis]
 gi|4566390|gb|AAD23329.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566392|gb|AAD23330.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566394|gb|AAD23331.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566398|gb|AAD23333.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566400|gb|AAD23334.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566402|gb|AAD23335.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/97 (57%), Positives = 76/97 (78%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPL 97


>gi|294661428|ref|YP_003579881.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
 gi|292660589|gb|ADE34837.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
          Length = 428

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 145/310 (46%), Gaps = 37/310 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI D +Q   LT+A+  I  RAIP L DG KPVHR  +   MQ G  + K     A I+G
Sbjct: 4   SIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAMQGGTGFQK----VASIAG 59

Query: 80  EV-MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            V M  YH HG  ++ +AL+ MA  W   + L +  G FGS     P A RY +C+L   
Sbjct: 60  GVAMYGYH-HGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIKCKLSPI 118

Query: 139 AHFLLDDLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
              +  D     V   P +   ++  P++     P VLVNG  GIA   ATNIP H+   
Sbjct: 119 FKAIYMDGDLTPVHEDPEHVPPAYYLPII-----PMVLVNGFSGIAKAYATNIPPHDPKS 173

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VV+GC+A +++ D  LD     ++ P F  G +  G         T  G+  ++G     
Sbjct: 174 VVNGCIAYLNDKDFTLD-----LKYPYF-KGEITDG---------TIYGTYELQG----- 213

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                + ++V+TEIP + ++   +  + +L  +  IV   DL  E  R    +  E   G
Sbjct: 214 -----KTKLVITEIPVKYDRVKYIAILDKLEEKGVIVSYKDLSKEDFRYEVTLKREYANG 268

Query: 318 ASADVILNQL 327
            + + IL   
Sbjct: 269 LTREKILKDF 278


>gi|60686900|gb|AAX35540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 97

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQG
Sbjct: 2   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQG 61

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 62  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 97


>gi|124108763|gb|ABM90958.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108765|gb|ABM90959.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|29165279|gb|AAO65580.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Java]
          Length = 95

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 72/91 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDF 93


>gi|255741569|gb|ACU32445.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 97

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 74/95 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVM 95


>gi|124108759|gb|ABM90956.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDF 88


>gi|124108725|gb|ABM90939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|255742424|gb|ACU32466.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 74/95 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVM 95


>gi|124108741|gb|ABM90947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDF 88


>gi|161705231|gb|ABX76740.1| ParC [Escherichia coli]
          Length = 134

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 85/120 (70%), Gaps = 3/120 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 15  ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL
Sbjct: 75  HPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133


>gi|304373560|ref|YP_003858305.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
 gi|299829516|gb|ADJ55309.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
          Length = 428

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 141/300 (47%), Gaps = 43/300 (14%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI D +Q   LT+A+  I  RAIP L DG KPVHR  +    + G  + K     A I+G
Sbjct: 4   SIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAAKGGTGFQK----VASIAG 59

Query: 80  EV-MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK- 137
            V M  YH HG  ++ +AL+ MA  W   + L E  G FGS     P A RY +C+L   
Sbjct: 60  GVAMYGYH-HGETSVEEALSLMAAHWCNNIPLFERDGFFGSRLVKKPGAPRYIKCKLSPL 118

Query: 138 -AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A ++ +DL        P+ D     P       P VLVNG  GIA   ATNIP H+  
Sbjct: 119 FKAIYMDEDLT------LPHEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPV 172

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            V++GCV+ ++  D  LD     ++ P F        +  I+N   T  G   ++G    
Sbjct: 173 SVLNGCVSYLNGKDFTLD-----LKYPHF--------KGDIEN--GTMYGKYELQG---- 213

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                 + ++V+TEIP + ++   +  + +L  +  IV   DL  E     +R  I LKR
Sbjct: 214 ------KTKLVITEIPVKYDRVKYISILDKLEEKGYIVSYKDLSKED----FRYEITLKR 263


>gi|124108687|gb|ABM90920.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108713|gb|ABM90933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108717|gb|ABM90935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108749|gb|ABM90951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108751|gb|ABM90952.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108769|gb|ABM90961.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108771|gb|ABM90962.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/87 (64%), Positives = 69/87 (79%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDF 153
           A RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDF 87


>gi|238652839|emb|CAR63879.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 78/103 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PA+ RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|171850789|emb|CAP11077.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850791|emb|CAP11078.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850793|emb|CAP11079.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            LL++G GNFGSVDGD PAA RYTE ++ K
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSK 90


>gi|124108709|gb|ABM90931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDF 88


>gi|254047463|gb|ACT63871.1| DNA gyrase subunit A [Escherichia coli]
          Length = 100

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 75/100 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 100


>gi|4566386|gb|AAD23327.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/97 (57%), Positives = 75/97 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPL 97


>gi|4566388|gb|AAD23328.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/97 (57%), Positives = 75/97 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPL 97


>gi|313192244|emb|CBY05930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 75/98 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           D  AA RYTE RL K AH L+ DL K+TV     +DG+
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVVSWITFDGN 100


>gi|21666248|gb|AAM73628.1|AF363612_1 DNA topoisomerase IV subunit [Providencia stuartii]
          Length = 116

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 3/117 (2%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRI++ M ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R 
Sbjct: 1   LKPVQRRIVYAMSELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            L++GQGN+G+ D DP   AA RYTE RL K A  LL +L   TVD+ PN+DG+  E
Sbjct: 61  PLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNE 116


>gi|12642570|gb|AAK00288.1|AF302140_1 GyrA [Stenotrophomonas maltophilia]
          Length = 97

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M ++    NK Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++G
Sbjct: 1   RRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           QGNFGS+DGD  AA RYTE R+ + AH L+ D+ K+T
Sbjct: 61  QGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKET 97


>gi|319827192|gb|ADV74813.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  125 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 79/116 (68%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|112383286|gb|ABI17783.1| gyrase [Streptococcus suis]
 gi|112383288|gb|ABI17784.1| gyrase [Streptococcus suis]
 gi|112383290|gb|ABI17785.1| gyrase [Streptococcus suis]
 gi|112383292|gb|ABI17786.1| gyrase [Streptococcus suis]
 gi|112383294|gb|ABI17787.1| gyrase [Streptococcus suis]
 gi|112383296|gb|ABI17788.1| gyrase [Streptococcus suis]
 gi|112383298|gb|ABI17789.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|311992744|ref|YP_004009612.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
 gi|298684527|gb|ADI96488.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
          Length = 442

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 178/379 (46%), Gaps = 37/379 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+ + N    YAI  +  RAIP++ DG+KPVHR +L+  MQ+     +K  K A ++G 
Sbjct: 7   LTEVINNEAKEYAIYTVEQRAIPNMIDGMKPVHRFMLYRAMQLAKGDKEKMHKLASVAGG 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V    + HG  +  DA A MA  WS     ++G+GNFGS      AA RY  CR+ +   
Sbjct: 67  VADAGYHHGEGSAQDAGALMANTWSNNFPFLDGEGNFGSRLVQQAAASRYIFCRISENFS 126

Query: 141 FLLDDLGKDTVDFRPNYDGS-FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
            +  D     V   P +    F  PV+     P VL+NG  GIA G ATNI  H++  V+
Sbjct: 127 KVFKDENVAPVHEDPEHKPPRFYLPVI-----PVVLLNGVEGIATGYATNILPHSIKSVI 181

Query: 200 DGCVAVIDNPDIDLDALMEIIRGP--DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + C     N  +D       I+ P  ++P  +  + R G K           + G   I 
Sbjct: 182 E-CTRQALNGVVD-------IKEPSVEYPKFSGKIYRDGPK---------CELHGTYKI- 223

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            TS  + Q+ +TEIPY  ++A  +EK+ + + +K  +  +   D   + G+   I++++ 
Sbjct: 224 -TS--KTQMEITEIPYSFDRAKYVEKVLDPLEDKGFISYS---DNCGKNGFGFKIKMRKE 277

Query: 318 ASADVI---LNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRR 372
           A  ++     +++ +   L    S N+  +  NG      + + ++K FV  R E V +R
Sbjct: 278 AGLELTEENHDKIMKMFGLIERLSQNITVIDENGKLRVFESAVELIKHFVEVRTEYVKKR 337

Query: 373 TKYLLNKARDRAHVLVGLA 391
               + +   +A +L   A
Sbjct: 338 IHAKIIETDSKAKILTAKA 356


>gi|114228541|gb|ABI58275.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 115

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/116 (51%), Positives = 83/116 (71%), Gaps = 3/116 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 1   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 60

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAA 139
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A
Sbjct: 61  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYA 115


>gi|238652841|emb|CAR63880.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 77/103 (74%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RM QD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMEQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|319827196|gb|ADV74815.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG++ IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSPIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|60651668|gb|AAX32845.1| GyrA [Riemerella anatipestifer]
          Length = 80

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/79 (67%), Positives = 66/79 (83%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +GV  NKKY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++G
Sbjct: 1   RRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDG 60

Query: 114 QGNFGSVDGDPPAAERYTE 132
           QGNFGS+DGDPPAA RYTE
Sbjct: 61  QGNFGSMDGDPPAAMRYTE 79


>gi|112383310|gb|ABI17795.1| gyrase [Streptococcus suis]
 gi|112383312|gb|ABI17796.1| gyrase [Streptococcus suis]
 gi|112383314|gb|ABI17797.1| gyrase [Streptococcus suis]
 gi|112383316|gb|ABI17798.1| gyrase [Streptococcus suis]
 gi|112383318|gb|ABI17799.1| gyrase [Streptococcus suis]
 gi|112383320|gb|ABI17800.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIYDA+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYDAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV++  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNYADNYDASEREP 92


>gi|112383304|gb|ABI17792.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|112383300|gb|ABI17790.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG++AIY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|4566396|gb|AAD23332.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 75/97 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  A +
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAADQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVANYDANEREPL 97


>gi|319827194|gb|ADV74814.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|313192268|emb|CBY05942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           GD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDF 93


>gi|319827190|gb|ADV74812.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|259089987|gb|ACV91834.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667427|gb|ACX47924.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667429|gb|ACX47925.1| DNA gyrase subunit A [Escherichia coli]
          Length = 98

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 74/98 (75%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 60

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN
Sbjct: 61  AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 98


>gi|112383306|gb|ABI17793.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDIAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFSDNYDASEREP 92


>gi|112383302|gb|ABI17791.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDYAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSSEREP 92


>gi|66391455|ref|YP_238980.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
 gi|62288543|gb|AAX78526.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 387

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 188/398 (47%), Gaps = 59/398 (14%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI D +Q   LT+A+  I  RAIP L DG KPVHR  +    + G      + K A I+G
Sbjct: 4   SIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKGG----SGFQKVASIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-- 137
            V    + HG  ++ +AL+ MA  W   + L +  G FGS     P A RY  C+L    
Sbjct: 60  GVAIYGYHHGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLSPLF 119

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A ++ +DL   T+   P+ D     P       P VLVNG  GIA G ATNIP H+   
Sbjct: 120 KAIYMDEDL---TI---PHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPVS 173

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V++GCV+ ++  D  LD     ++ P F  G ++ G         T  G   ++G     
Sbjct: 174 VLNGCVSYLNGKDFTLD-----LKYPQF-KGDIVDG---------TMYGKYELQG----- 213

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                + ++V+TEIP + ++   +  + +L  +  IV   DL  E     +R  I LKR 
Sbjct: 214 -----KTKLVITEIPVKYDRVKYIAILDKLEEKGCIVSYKDLSKED----FRYEITLKRE 264

Query: 318 ASADVILNQLYRYTSL--QSLFSVNMV---ALNGY-KPERFTLIGILKAFVAFREEVVVR 371
            +  +   ++ +   L   S  ++N++    L+ Y +PE      +LK FV  R  V  +
Sbjct: 265 YANGLTHEKILKDFGLIENSNPNINVIFNGKLHSYERPET-----LLKDFVDIRMTVYQQ 319

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           R +  + +A++       LA A+A ++ + ++I  SP+
Sbjct: 320 RIEKRIQEAKE------ALARALAKVEFIDQMIE-SPD 350


>gi|124108701|gb|ABM90927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/87 (63%), Positives = 69/87 (79%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDF 153
           A RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDF 87


>gi|301166553|emb|CBW26129.1| putative DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 480

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 9/197 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S+ + D ++  Y TY I  ++ RAIP L+DGLKP  RRILF + +     +K  +K 
Sbjct: 8   SMESIPLEDIVREEYRTYQIYTLMDRAIPYLKDGLKPGQRRILFTLWK---NQSKGLMKV 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSL--RLLLIEGQGNFGSVDGDPPAAERYTE 132
           +  +G V+   HPHG A++  A+  MAQD++      LI+ +G FG      PAA RY E
Sbjct: 65  SSATGLVLT-LHPHGPASVESAIVNMAQDYTFSNNYPLIDKKGYFGERMETSPAASRYIE 123

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           C+L K +  LL DD+  D V+  PNYD    EPV L  + P +L+NG  GI  G ++ IP
Sbjct: 124 CKLGKISQILLFDDM--DQVEMVPNYDEKVMEPVNLLPKLPLMLLNGAEGIGTGFSSVIP 181

Query: 192 THNLGEVVDGCVAVIDN 208
           + +  EV++  ++ +++
Sbjct: 182 SFSHKEVINSMISFLES 198


>gi|197209604|gb|ACH48044.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 93

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 70/90 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA  Y
Sbjct: 2   YKKAARVVGDVTGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMPY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           TE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 62  TEIRLAKIAHGLMADLEKETVDFVDNYDGT 91


>gi|19549339|gb|AAL89786.2|AF487421_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 94

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA 
Sbjct: 3   QAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 62

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           RYTE RL K AH L+ DL K+TVDF   YDG+
Sbjct: 63  RYTEIRLAKIAHELMADLEKETVDFVDTYDGN 94


>gi|253762209|gb|ACT35556.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 97

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 73/95 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDYAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVM 95


>gi|19526749|gb|AAL89785.1|AF487420_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 92

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/88 (62%), Positives = 70/88 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDF 88


>gi|208972196|gb|ACI32676.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 119

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 3/116 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 4   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 63

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAA 139
           HPHG++A Y A+  MAQ +S R  L++GQGN G+ D DP   AA RYTE RL K A
Sbjct: 64  HPHGDSACYKAMVLMAQPFSYRYPLVDGQGNGGAPD-DPKSFAAMRYTESRLSKDA 118


>gi|799017|emb|CAA60388.1| DNA Gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 95

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 74/95 (77%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 1   DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+
Sbjct: 61  HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNL 95


>gi|7682364|gb|AAF67237.1|AF144786_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 92

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 73/92 (79%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           R+ K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 61  RMSKIALEILRDINKNTVDFVDNYDANEREPL 92


>gi|7682360|gb|AAF67235.1|AF144784_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|7682362|gb|AAF67236.1|AF144785_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 73/91 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R
Sbjct: 2   ARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEAR 61

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 62  MSKIALEMLRDINKNTVDFVDNYDANEREPL 92


>gi|161598227|gb|ABX74934.1| gyrase subunit A [Ureaplasma urealyticum]
          Length = 99

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 72/96 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD  AA
Sbjct: 4   DKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            RYTE RL K ++ LL  + K+TVDF PNYD S QE
Sbjct: 64  MRYTEARLSKISYELLKYIDKETVDFVPNYDASEQE 99


>gi|255742426|gb|ACU32467.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/95 (60%), Positives = 73/95 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVM 95


>gi|112383308|gb|ABI17794.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDFAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD + +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSNEREP 92


>gi|24020928|gb|AAN40859.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 74/104 (71%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|11761920|gb|AAG40243.1|AF303622_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761924|gb|AAG40245.1|AF303624_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761926|gb|AAG40246.1|AF303625_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761928|gb|AAG40247.1|AF303626_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761930|gb|AAG40248.1|AF303627_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761932|gb|AAG40249.1|AF303628_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761934|gb|AAG40250.1|AF303629_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761938|gb|AAG40252.1|AF303631_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761940|gb|AAG40253.1|AF303632_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761942|gb|AAG40254.1|AF303633_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761946|gb|AAG40256.1|AF303635_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761948|gb|AAG40257.1|AF303636_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761950|gb|AAG40258.1|AF303637_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761952|gb|AAG40259.1|AF303638_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761958|gb|AAG40262.1|AF303641_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761960|gb|AAG40263.1|AF303642_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761970|gb|AAG40268.1|AF303647_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761982|gb|AAG40274.1|AF303653_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761984|gb|AAG40275.1|AF303654_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
          Length = 106

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 78/106 (73%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761922|gb|AAG40244.1|AF303623_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761944|gb|AAG40255.1|AF303634_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761976|gb|AAG40271.1|AF303650_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761978|gb|AAG40272.1|AF303651_1 topoisomerase IV subunit C [Raoultella terrigena]
 gi|11761980|gb|AAG40273.1|AF303652_1 topoisomerase IV subunit C [Raoultella ornithinolytica]
 gi|11761986|gb|AAG40276.1|AF303655_1 topoisomerase IV subunit C [Raoultella planticola]
          Length = 106

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 78/106 (73%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILL 106


>gi|94467525|dbj|BAE93904.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           FGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|93278234|gb|ABF06582.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278238|gb|ABF06584.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 72/98 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|11761962|gb|AAG40264.1|AF303643_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|4469257|emb|CAB38319.1| topoisomerase IV [Klebsiella oxytoca]
          Length = 106

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/106 (54%), Positives = 78/106 (73%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP ++ AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMMPARLPNILL 106


>gi|301014720|gb|ADK47159.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 114

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 3/114 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++
Sbjct: 2   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 62  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 114


>gi|7682366|gb|AAF67238.1|AF144787_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI+G+VMGKYHPHG+++IY+A  RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R
Sbjct: 2   ARITGDVMGKYHPHGDSSIYEATVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEAR 61

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + K A  +L D+ K+TVDF  NYD + +EP+
Sbjct: 62  MSKIALEMLRDINKNTVDFVDNYDANEREPL 92


>gi|313192260|emb|CBY05938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 72/92 (78%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WN+ Y K AR+ G+V G+YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 3   RIGHDWNQAYKKSARVVGDVFGEYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           GD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDF 94


>gi|11761966|gb|AAG40266.1|AF303645_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 106

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 77/106 (72%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|27542579|gb|AAO16890.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 69/87 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WN  Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNTAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVD 152
           AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVD 87


>gi|11761936|gb|AAG40251.1|AF303630_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761954|gb|AAG40260.1|AF303639_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761964|gb|AAG40265.1|AF303644_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761968|gb|AAG40267.1|AF303646_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761972|gb|AAG40269.1|AF303648_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 77/106 (72%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761956|gb|AAG40261.1|AF303640_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 77/106 (72%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|156628728|gb|ABU89281.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628730|gb|ABU89282.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628734|gb|ABU89284.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628736|gb|ABU89285.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 113

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 3/114 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 113


>gi|93278232|gb|ABF06581.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278240|gb|ABF06585.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQG
Sbjct: 1   ILYAMHDLSINSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|93278230|gb|ABF06580.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278242|gb|ABF06586.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|24020926|gb|AAN40858.1| ParC [Streptococcus mitis]
 gi|24020932|gb|AAN40861.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 74/104 (71%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|24020930|gb|AAN40860.1| ParC [Streptococcus salivarius]
          Length = 106

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 75/106 (70%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 106


>gi|313192272|emb|CBY05944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 73/97 (75%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GD  AA RYT  RL K AH L+ DL K+TV F   Y+
Sbjct: 62  GDSAAAMRYTVIRLAKIAHQLMADLEKETVYFLDKYE 98


>gi|22094464|gb|AAM91911.1|AF498911_1 gyrase A [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 97

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|65431631|gb|AAY42593.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  121 bits (303), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 61/86 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYT 131
           LR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|17432729|gb|AAL39125.1|AF447053_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432731|gb|AAL39126.1|AF447054_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432733|gb|AAL39127.1|AF447055_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432735|gb|AAL39128.1|AF447056_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Brandenburg]
 gi|17432737|gb|AAL39129.1|AF447057_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Havana]
 gi|17432739|gb|AAL39130.1|AF447058_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|17432741|gb|AAL39131.1|AF447059_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|18389126|gb|AAL67622.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389128|gb|AAL67623.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389130|gb|AAL67624.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389132|gb|AAL67625.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389134|gb|AAL67626.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389136|gb|AAL67627.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389138|gb|AAL67628.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389140|gb|AAL67629.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389142|gb|AAL67630.1| DNA gyrase subunit A [Escherichia coli]
          Length = 90

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|65431749|gb|AAY42594.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 62/86 (72%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY+ L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYT 131
           LR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|93278236|gb|ABF06583.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 72/98 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQG
Sbjct: 1   ILYAMHDLSINSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|295315161|gb|ADF97668.1| gyrase subunit A [Campylobacter coli]
 gi|295315167|gb|ADF97671.1| gyrase subunit A [Campylobacter coli]
 gi|295315169|gb|ADF97672.1| gyrase subunit A [Campylobacter coli]
 gi|295315171|gb|ADF97673.1| gyrase subunit A [Campylobacter coli]
 gi|295315173|gb|ADF97674.1| gyrase subunit A [Campylobacter coli]
 gi|295315179|gb|ADF97677.1| gyrase subunit A [Campylobacter coli]
 gi|295315181|gb|ADF97678.1| gyrase subunit A [Campylobacter coli]
 gi|295315185|gb|ADF97680.1| gyrase subunit A [Campylobacter coli]
 gi|295315187|gb|ADF97681.1| gyrase subunit A [Campylobacter coli]
 gi|295315189|gb|ADF97682.1| gyrase subunit A [Campylobacter coli]
 gi|295315191|gb|ADF97683.1| gyrase subunit A [Campylobacter coli]
 gi|295315193|gb|ADF97684.1| gyrase subunit A [Campylobacter coli]
 gi|295315195|gb|ADF97685.1| gyrase subunit A [Campylobacter coli]
 gi|295315197|gb|ADF97686.1| gyrase subunit A [Campylobacter coli]
 gi|295315201|gb|ADF97688.1| gyrase subunit A [Campylobacter coli]
 gi|295315203|gb|ADF97689.1| gyrase subunit A [Campylobacter coli]
 gi|295315211|gb|ADF97693.1| gyrase subunit A [Campylobacter coli]
 gi|295315213|gb|ADF97694.1| gyrase subunit A [Campylobacter coli]
 gi|295315217|gb|ADF97696.1| gyrase subunit A [Campylobacter coli]
 gi|295315219|gb|ADF97697.1| gyrase subunit A [Campylobacter coli]
 gi|295315221|gb|ADF97698.1| gyrase subunit A [Campylobacter coli]
 gi|295315223|gb|ADF97699.1| gyrase subunit A [Campylobacter coli]
 gi|295315225|gb|ADF97700.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/82 (65%), Positives = 65/82 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGD 123
           QD+S+R   I+GQGNFGS+DGD
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGD 82


>gi|94467527|dbj|BAE93905.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + R+AQ +S+R +L++GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYKTIVRLAQPFSMRYMLVDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           FGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|27542593|gb|AAO16897.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|27542599|gb|AAO16900.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|3152656|gb|AAC17106.1| DNA-gyrase subunit A [Citrobacter freundii]
          Length = 91

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 69/91 (75%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH 
Sbjct: 1   IGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHE 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           L+ DL K+TVDF  NYDG+ Q P V+  + P
Sbjct: 61  LMADLEKETVDFVDNYDGTEQIPDVMPTKIP 91


>gi|34604732|gb|AAQ79817.1| GyrA [Escherichia coli]
          Length = 79

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|190334100|gb|ACE73898.1| topoisomerase IV subunit A [Bartonella vinsonii]
          Length = 100

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/94 (56%), Positives = 73/94 (77%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  LI+GQGNFG++DGD  AA RYTE 
Sbjct: 1   CARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           R+ + A  LL+ + ++ +DFR  Y+   +EPVVL
Sbjct: 61  RMTEVAALLLEGINENAIDFRLTYNEEDEEPVVL 94


>gi|22094462|gb|AAM91910.1|AF498910_1 gyrase A [Salmonella enterica subsp. enterica serovar Derby]
          Length = 101

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 3/102 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDT--VDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+   + + P YDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKERRWISWIP-YDG 101


>gi|156628732|gb|ABU89283.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628738|gb|ABU89286.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628740|gb|ABU89287.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628742|gb|ABU89288.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628744|gb|ABU89289.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 112

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 3/113 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  L
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELL 112


>gi|261599205|gb|ACX85665.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 74/103 (71%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPA
Sbjct: 4   FDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPA 63

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           A RYTE RL + A +LL D+ K+TV F  N+D + +EP  L A
Sbjct: 64  AMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTALPA 106


>gi|93278246|gb|ABF06588.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGSVDGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|295315175|gb|ADF97675.1| gyrase subunit A [Campylobacter coli]
 gi|295315183|gb|ADF97679.1| gyrase subunit A [Campylobacter coli]
 gi|295315199|gb|ADF97687.1| gyrase subunit A [Campylobacter coli]
 gi|295315205|gb|ADF97690.1| gyrase subunit A [Campylobacter coli]
 gi|295315207|gb|ADF97691.1| gyrase subunit A [Campylobacter coli]
 gi|295315209|gb|ADF97692.1| gyrase subunit A [Campylobacter coli]
 gi|295315215|gb|ADF97695.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/82 (65%), Positives = 65/82 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGD 123
           QD+S+R   I+GQGNFGS+DGD
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGD 82


>gi|32481444|gb|AAP84068.1| gyrase [Enterococcus casseliflavus]
          Length = 83

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 70/83 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGKYHPHG++AIY
Sbjct: 1   SVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNF 117
           +++ RMAQ +S R +L++G GNF
Sbjct: 61  ESMVRMAQPFSYRYMLVDGHGNF 83


>gi|63849746|emb|CAI72577.1| gyrA protein [Salmonella enterica subsp. enterica serovar Newport]
 gi|63849750|emb|CAI72578.1| gyrA protein [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 83

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 67/82 (81%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 2   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGS 160
           AH L+ DL K+TVDF  NYDG+
Sbjct: 62  AHELMADLEKETVDFVDNYDGT 83


>gi|122893193|gb|ABM67553.1| DNA gyrase [Staphylococcus intermedius]
 gi|122893201|gb|ABM67557.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 67/79 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|22094466|gb|AAM91912.1|AF498912_1 gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 94

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 69/91 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 4   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 63

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           S+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 64  SIDGDSAAAMRYTEIRLAKIAHELMADLEKE 94


>gi|34604734|gb|AAQ79818.1| GyrA [Escherichia coli]
          Length = 79

 Score =  119 bits (298), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 64/79 (81%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|93278248|gb|ABF06589.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSMRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGSVDGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|175941429|gb|ACB72669.1| GyrA [Streptomyces sp. Ht 020]
          Length = 179

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 108/202 (53%), Gaps = 26/202 (12%)

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM        
Sbjct: 3   EVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM-------- 54

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                             G + + E+Q  AILE++L RL  L    I  E + L  +I E
Sbjct: 55  ------------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINE 96

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL+S ++   I+ +EL ++ D+    RR+ +V    DM  ED I  ED+VVT+S  G
Sbjct: 97  YNEILASPAKQRTIVSEELAAIVDKFGDDRRSALVPFDGDMSIEDLIAEEDIVVTISRSG 156

Query: 547 YVKRVPLSVYRAQRRGGKGRSG 568
           YVKR     YR+Q RGGKG  G
Sbjct: 157 YVKRTKTDDYRSQNRGGKGVRG 178



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            ++L  +E  ++T+S  G+ KRT + D+R  NR GKG+R T
Sbjct: 139 IEDLIAEEDIVVTISRSGYVKRTKTDDYRSQNRGGKGVRGT 179


>gi|175941425|gb|ACB72667.1| GyrA [Streptomyces sp. Bd 205]
          Length = 180

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 26/199 (13%)

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM        
Sbjct: 6   EVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM-------- 57

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                             G + + E+Q  AILE++L RL  L    I  E + L  +I E
Sbjct: 58  ------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINE 99

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  G
Sbjct: 100 YNAILASPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRSG 159

Query: 547 YVKRVPLSVYRAQRRGGKG 565
           YVKR     YR+Q+RGGKG
Sbjct: 160 YVKRTKTDDYRSQKRGGKG 178


>gi|3152709|gb|AAC17123.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 75/107 (70%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E 
Sbjct: 1   RRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEM 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  HGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 107


>gi|146306|gb|AAA23948.1| gyrase A [Escherichia coli]
          Length = 88

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 69/80 (86%)

Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
          IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 8  ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67

Query: 76 RISGEVMGKYHPHGNAAIYD 95
          R+ G+V+GKYHPHG++A+YD
Sbjct: 68 RVVGDVIGKYHPHGDSAVYD 87


>gi|122893199|gb|ABM67556.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYGAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|22094460|gb|AAM91909.1|AF498909_1 gyrase A [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 90

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|122893191|gb|ABM67552.1| DNA gyrase [Staphylococcus intermedius]
          Length = 79

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|24020924|gb|AAN40857.1| ParC [Streptococcus mitis]
          Length = 102

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 72/102 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
            GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 102


>gi|311992987|ref|YP_004009854.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
 gi|295815276|gb|ADG36202.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
          Length = 465

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 180/389 (46%), Gaps = 35/389 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YAI  +  RAIP+L DG KPV R +++  ++M    ++K+ K A ++G V   
Sbjct: 32  INNEALAYAIYTVENRAIPNLMDGFKPVQRFMVYRALEMAKGNHQKFHKLASVAGGVADA 91

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  +A A MA  W+     ++GQGNFGS      AA RY  CR+      +  
Sbjct: 92  GYHHGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQEAAASRYIFCRISDNFRKVFK 151

Query: 145 DLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           D     ++  P + D     P       P VL+NG  GIA G +T+I  H+L  V++ C 
Sbjct: 152 D-----IEIAPQHEDEEHLPPKHYLPVIPTVLLNGVRGIATGYSTSILPHSLESVIE-CT 205

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +     +D +  +     P F  G ++           T  G   ++GV     TS  +
Sbjct: 206 RLALQGKLDKEPEVAF---PQF-NGNIV----------KTEDGKYELQGVYKF--TS--K 247

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS---- 319
            Q+ ++EIPY  ++A  +EK+ + + +K  +      D+  + G+   ++ ++       
Sbjct: 248 TQMYISEIPYSFDRAKYVEKVLDPLEDKGFI---TYDDDCSKHGFGFKVKFRKDYKLPED 304

Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERF-TLIGILKAFVAFREEVVVRRTKYL 376
             ++  ++ R   L       +V +  NG   ++F     ++K FV  R++ V  R +++
Sbjct: 305 EGLMHEKIMRDFKLTEKVPQYIVVIDENGKLNDKFENASDLIKYFVEVRKKYVKGRIEFM 364

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           +NK   +  + +  A+ +  ++    +I+
Sbjct: 365 INKTERQFKLAIAKAMFIKTVNNGETVIK 393


>gi|312183505|gb|ADQ42322.1| DNA gyrase subunit A [Actinobaculum schaalii]
          Length = 105

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 69/100 (69%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  + K A+I G+VMG YHPHG+AAIYD + R+AQ WS+R  L+ GQGNFG+      AA
Sbjct: 5   DSSFSKSAKIVGDVMGHYHPHGDAAIYDTMVRLAQPWSMRYPLVSGQGNFGTSGDLGAAA 64

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            RYTE R+   A  ++ D+ ++TVDF PNYDGS  EP +L
Sbjct: 65  PRYTEARMAPLALEMVRDIKENTVDFEPNYDGSLMEPTIL 104


>gi|24020922|gb|AAN40856.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 73/104 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 104


>gi|156628726|gb|ABU89280.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 114

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 58/114 (50%), Positives = 80/114 (70%), Gaps = 3/114 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA  YTE RL K A  LL
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMCYTESRLSKYAELLL 113


>gi|27542595|gb|AAO16898.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 5   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDG 64

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGK 148
           D  AA RYTE RL K AH L+ DL K
Sbjct: 65  DSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|27542589|gb|AAO16895.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 83

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGK 148
           AA RYTE RL K AH L+ DL K
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEK 83


>gi|27542577|gb|AAO16889.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|27542583|gb|AAO16892.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGK 148
           D  AA RYTE RL K AH L+ DL K
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEK 87


>gi|27542591|gb|AAO16896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/82 (63%), Positives = 64/82 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGK 148
           A RYTE RL K AH L+ DL K
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|215536135|gb|ACJ68515.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 70/91 (76%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVM 91


>gi|312232294|gb|ADQ53543.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  117 bits (293), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/113 (49%), Positives = 80/113 (70%), Gaps = 3/113 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++
Sbjct: 2   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
             Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  L
Sbjct: 62  PCYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 113


>gi|313192266|emb|CBY05941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 101

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 68/90 (75%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K +K   +S  V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 9   KPIKNLPVSLVVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMR 68

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           YTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 69  YTEIRLAKIAHELMADLEKETVDFVDNYDG 98


>gi|213585067|ref|ZP_03366893.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 125

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 83/124 (66%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+S
Sbjct: 1   IAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLS 60

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 61  HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 120

Query: 604 WRLP 607
           ++LP
Sbjct: 121 YQLP 124


>gi|312232292|gb|ADQ53542.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/113 (50%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ 
Sbjct: 2   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDI 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  L
Sbjct: 62  ACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 113


>gi|27542581|gb|AAO16891.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 66/83 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 2   DWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 61

Query: 126 AAERYTECRLQKAAHFLLDDLGK 148
           AA RYTE RL K AH L+ DL K
Sbjct: 62  AAMRYTEIRLAKIAHELMADLEK 84


>gi|215536133|gb|ACJ68514.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 94

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 70/91 (76%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDYAVYFTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVM 91


>gi|82654941|sp|P0C0Q9|GYRA_STAEP RecName: Full=DNA gyrase subunit A
 gi|240997|gb|AAB20672.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 94

 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 72/92 (78%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
            Y K ARI G+VMGKYHPHG+++IY+A+ RMA
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMA 94


>gi|3914279|sp|O68891|PARC_ENTSA RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3046560|gb|AAC13493.1| DNA topoisomerase IV subunit C [Citrobacter freundii]
 gi|3046562|gb|AAC13494.1| DNA topoisomerase IV subunit C [Cronobacter sakazakii]
          Length = 110

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 3/109 (2%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+
Sbjct: 3   VIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYE 62

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  L
Sbjct: 63  AMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 110


>gi|110456308|gb|ABG74699.1| GyrA [Ureaplasma urealyticum]
          Length = 101

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+  +Y  + RMAQD+S+R LL++G GNFGS+DGD  AA RYTE RL K ++
Sbjct: 13  VIGKYHPHGDQVVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARLSKISY 72

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL  + K+TVDF PNYD S QEP VL
Sbjct: 73  ELLKYIDKETVDFVPNYDASEQEPSVL 99


>gi|261599209|gb|ACX85667.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/98 (52%), Positives = 70/98 (71%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           ++K Y K A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPA
Sbjct: 8   FDKSYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPA 67

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           A RYTE RL + A +LL D+ K TV F  N+D + +EP
Sbjct: 68  AMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEP 105


>gi|34604736|gb|AAQ79819.1| GyrA [Escherichia coli]
          Length = 79

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 63/79 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|311993520|ref|YP_004010385.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
 gi|295917477|gb|ADG60148.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
          Length = 447

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 174/386 (45%), Gaps = 33/386 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T   +T  + N    YA+  +  RAIP+L DGLKPV R +L+  +Q+    + K+ K A
Sbjct: 3   LTDRELTQIINNEAKIYAMYTVENRAIPNLIDGLKPVQRFMLYRAIQLAKGKSDKFHKLA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            ++G V    + HG  +  +A A MA  W+     ++GQGNFGS      AA RY  CR+
Sbjct: 63  SVAGGVADAGYHHGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQQAAASRYIFCRV 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +      + + KDT     + D     P       P VL+NG  GIA G +T+I  H+ 
Sbjct: 123 SEN----FNKVYKDTEIAPEHEDLEHLPPRFYLPIIPTVLLNGVRGIATGYSTSILPHDF 178

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             +V      ++   + +            PT A    R  +   Y T      + G  +
Sbjct: 179 ESIVRCTEQALNGETVSM------------PTVAFPQFRGEV---YCTEPNKYELHGTYN 223

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
              TS  + Q+ ++EIPYQ ++A  +EK+ + + +  ++      D+  ++G+   I+ +
Sbjct: 224 F--TS--KTQMYISEIPYQFDRAKYVEKVLDPLEDAGLI---TYDDDCSKEGFGFKIKFR 276

Query: 316 RGASADVILNQL----YRYTSLQSLFSVNMVAL--NGYKPERF-TLIGILKAFVAFREEV 368
           +       + +L     R   L    S N+V +  NG   +RF     +++ FV  R   
Sbjct: 277 KDYKLPTDVTELDEKIKRDFKLVERVSQNIVVIDENGKLHDRFENSAQLVEHFVKVRLSF 336

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAV 394
           V +R  +++ K++    +    A+ +
Sbjct: 337 VEKRIGFMIEKSKHAFELAYAKALFI 362


>gi|175941431|gb|ACB72670.1| GyrA [Streptomyces sp. Md 005]
 gi|175941433|gb|ACB72671.1| GyrA [Streptomyces sp. Md 039]
          Length = 180

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 26/199 (13%)

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM        
Sbjct: 6   EVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM-------- 57

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                             G + + E+Q  AILE++L RL  L    I  E + L  +I E
Sbjct: 58  ------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINE 99

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  R   I+ +EL ++ ++    R +++V    DM  ED I +ED+V+T+S  G
Sbjct: 100 YNAILASPERQRQIVSEELAAIVEKFGDDRCSKLVPFYGDMSIEDLIAKEDIVLTISRSG 159

Query: 547 YVKRVPLSVYRAQRRGGKG 565
           YVKR     YR+Q+RGGKG
Sbjct: 160 YVKRTKTDDYRSQKRGGKG 178



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           ++L  KE  +LT+S  G+ KRT + D+R   R GKG+R
Sbjct: 143 EDLIAKEDIVLTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|175941435|gb|ACB72672.1| GyrA [Streptomyces sp. Md 063]
          Length = 180

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 108/199 (54%), Gaps = 26/199 (13%)

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM        
Sbjct: 6   EVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIVLIRRSKTVKIAREGLM-------- 57

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                             G + + E+Q  AIL+++L RL  L    I  E + L  +I E
Sbjct: 58  ------------------GLLEIDEIQANAILDMQLRRLAALEHQKITAEHDELQAKINE 99

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  R   I+++EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  G
Sbjct: 100 YNAILASPERQRQIVREELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRSG 159

Query: 547 YVKRVPLSVYRAQRRGGKG 565
           YVKR     YR+Q+RGGKG
Sbjct: 160 YVKRTKTDDYRSQKRGGKG 178


>gi|312192221|gb|ADQ43807.1| topoisomerase IV subunit A [Aerococcus urinae]
          Length = 97

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/96 (53%), Positives = 68/96 (70%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M   G   +  + K A+  G V+G YHPHG++++Y+A+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           Q W  R+ LI+  GN GS+DGDP AA RYTE RL K
Sbjct: 61  QAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARLSK 96


>gi|27542587|gb|AAO16894.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 64/81 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLL 143
           D  AA RYTE RL K AH L+
Sbjct: 63  DSAAAMRYTEIRLAKIAHELM 83


>gi|47420010|gb|AAT27357.1| DNA gyrase A [Campylobacter lari]
          Length = 157

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/180 (37%), Positives = 106/180 (58%), Gaps = 26/180 (14%)

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A ++++LN L++ T+++S + V M+A++  +P+ F+   +L  F+  R+ V++RRT Y L
Sbjct: 1   AMSEIVLNNLFKSTTMESTWGVIMLAIHNKEPKVFSFFELLNLFLNHRKTVIIRRTIYEL 60

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+                 
Sbjct: 61  QKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK----------------- 103

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+    IL S + L
Sbjct: 104 ---------FGLSELQSNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSETLL 154


>gi|27542597|gb|AAO16899.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 64/82 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGK 148
           A RYTE RL K AH L+ DL K
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|27542601|gb|AAO16901.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 65/83 (78%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 2   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 61

Query: 126 AAERYTECRLQKAAHFLLDDLGK 148
           AA RYTE RL K AH L+ DL K
Sbjct: 62  AAMRYTEIRLAKIAHELMADLEK 84


>gi|11761974|gb|AAG40270.1|AF303649_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 3/106 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPH ++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKYHPHCDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE R  K A  LL  LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRGSKYAELLLSQLGQGTVDWVPNFDGTLQEPKMLPARMPNILL 106


>gi|328957565|ref|YP_004374951.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673889|gb|AEB29935.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 470

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 193/406 (47%), Gaps = 69/406 (16%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++A++  + EV+ RRT Y L KA  R H++ GL  A++ LD+V+  IR S + + A+  
Sbjct: 1   MIEAYLEHKREVLTRRTNYNLRKAESRQHIVSGLIKALSILDQVIDAIRSSKDKKNAKEN 60

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L++R                             +E+Q  AI+ L+L RLT      + NE
Sbjct: 61  LIER--------------------------FDFTEIQAEAIVSLQLYRLTNTDITALENE 94

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIV 534
             +L   I     ILSS   L  ++K+EL  VK    +PR T I + +  L ++ E  I 
Sbjct: 95  AAALSRAIISYNKILSSSKELDKVMKKELAEVKKNYASPRLTVIQDQIEELKIDTEVLIA 154

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+++V+V+  GY+KR  L  Y A +    G     +++ D+   +  ++T   +L F+S
Sbjct: 155 SEEVIVSVTKEGYIKRTSLRSYGASKPNELG-----IKEGDYPLYIQQLNTLNHLLIFTS 209

Query: 595 LGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDES---------SWN 644
            G +    ++R P+      R K        + GE ++  + F  DE+            
Sbjct: 210 KGNI----IYR-PVNEISDLRWK--------DMGEHLSQNIAFSADETVVKVFGITQQLP 256

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDS-RDEILSVETCTQEN----D 695
                F TK G +++  +S+++ I R+ K     A+KL +  DE++++     EN    D
Sbjct: 257 QATFTFITKEGYIKQTAVSEYV-IGRNYKNKSFSAIKLKTATDELINI--IHTENPLLKD 313

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + L T  G  +R+ +  + V  G  + GV+ I+L +GD VI+  ++
Sbjct: 314 VFLVTHRGFGLRYSLEEVPV-VGSKAAGVKSINLKEGDYVINGVLI 358



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 26/132 (19%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLK-NDSSVEGNISEERCQELKL-------KEQFILTV 803
           I Y K +S+ + L     +E+  +K N +S    + +++ +ELK+        E+ I++V
Sbjct: 103 ISYNKILSSSKELDKVMKKELAEVKKNYASPRLTVIQDQIEELKIDTEVLIASEEVIVSV 162

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-----VNDNDQIILVSD 858
           +++G+ KRTS             +R+   SK NE+G     +P     +N  + +++ + 
Sbjct: 163 TKEGYIKRTS-------------LRSYGASKPNELGIKEGDYPLYIQQLNTLNHLLIFTS 209

Query: 859 KGTLIRVPVNEI 870
           KG +I  PVNEI
Sbjct: 210 KGNIIYRPVNEI 221


>gi|65431527|gb|AAY42592.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 84

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAER 129
           LR  L++GQGNFGS   DPPAA R
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMR 84


>gi|284027745|gb|ADB66699.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 73/104 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G +W K   K AR+ G+V+G YHPHG++A YD + RMAQ +SLR +L++GQG 
Sbjct: 1   LYAMNVLGHDWIKAKKKAARVVGDVIGIYHPHGDSAEYDTIVRMAQPFSLRHMLVDGQGI 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           FGS+DGD  AA R+TE RL   AH L  DL  +TVDF  NYDG+
Sbjct: 61  FGSIDGDCAAAMRHTEIRLALIAHRLKADLEGETVDFVDNYDGT 104


>gi|47420012|gb|AAT27358.1| DNA gyrase A [Campylobacter jejuni]
          Length = 172

 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 26/195 (13%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           IA+ N+DEV+ +I+ S +  TAR  L+ +                            LSE
Sbjct: 2   IALDNIDEVIALIKNSSDNNTARDSLVAK--------------------------FGLSE 35

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
           +Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L  +I+ EL  ++ +
Sbjct: 36  LQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSK 95

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
            D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V  
Sbjct: 96  FDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTT 155

Query: 572 RDEDFVTDLFIVSTH 586
            D+DF+      +TH
Sbjct: 156 YDDDFIESFSTANTH 170


>gi|91093519|gb|ABE11581.1| ParC [Escherichia coli]
 gi|91093593|gb|ABE11592.1| ParC [Escherichia coli]
          Length = 108

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/108 (50%), Positives = 77/108 (71%), Gaps = 3/108 (2%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGK 148
            +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+
Sbjct: 61  PFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQ 107


>gi|3152672|gb|AAC17114.1| DNA gyrase subunit A [Shigella flexneri]
          Length = 81

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 63/80 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR  G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARAVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLL 143
             AA RYTE RL K AH L+
Sbjct: 61  SAAAMRYTEIRLAKIAHELM 80


>gi|93278244|gb|ABF06587.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 91

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 67/91 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 91


>gi|124108799|gb|ABM90976.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 74

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/74 (62%), Positives = 61/74 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGD 123
           L++GQGNFGS+DGD
Sbjct: 61  LVDGQGNFGSIDGD 74


>gi|5453231|gb|AAD43480.1| DNA gyrase subunit A [Staphylococcus simulans]
 gi|5453232|gb|AAD43481.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453233|gb|AAD43482.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453235|gb|AAD43484.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453237|gb|AAD43486.1| DNA gyrase subunit A [Staphylococcus capitis]
          Length = 81

 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 68/81 (83%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|259493809|gb|ACW82745.1| DNA gyrase subunit A [Vibrio cholerae]
          Length = 80

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 62/78 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAH 140
           D  AA RYTE R+ K AH
Sbjct: 63  DSAAAMRYTEVRMSKIAH 80


>gi|261599207|gb|ACX85666.1| ParC [Streptococcus pneumoniae]
          Length = 101

 Score =  114 bits (285), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 50/96 (52%), Positives = 68/96 (70%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA 
Sbjct: 1   QSYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAM 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE RL + A +LL D+ K TV F  N+D + +EP
Sbjct: 61  RYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEP 96


>gi|91093517|gb|ABE11580.1| ParC [Escherichia coli]
 gi|91093521|gb|ABE11582.1| ParC [Escherichia coli]
 gi|91093523|gb|ABE11583.1| ParC [Escherichia coli]
 gi|91093527|gb|ABE11585.1| ParC [Escherichia coli]
 gi|91093531|gb|ABE11587.1| ParC [Escherichia coli]
 gi|91093551|gb|ABE11590.1| ParC [Escherichia coli]
 gi|91093585|gb|ABE11591.1| ParC [Escherichia coli]
 gi|91093595|gb|ABE11593.1| ParC [Escherichia coli]
          Length = 108

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/108 (50%), Positives = 76/108 (70%), Gaps = 3/108 (2%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGK 148
            +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+
Sbjct: 61  PFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQ 107


>gi|321268220|gb|ADW78918.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 89

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 68/87 (78%)

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TV
Sbjct: 3   SVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETV 62

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNG 178
           DF+ N+D +  EP V+  + P +L+NG
Sbjct: 63  DFQLNFDDTLYEPKVMPTKVPTLLING 89


>gi|323694737|ref|ZP_08108895.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501174|gb|EGB17078.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 412

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 201/429 (46%), Gaps = 32/429 (7%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+A+ G +PE  TL GILK ++ F+ E   R+   LL K  ++  +  GL  A   +D +
Sbjct: 1   MLAIAGGRPETLTLKGILKNYLDFQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLI 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + I+R S N + A+  LM+   + S+I       D+ +        +  +E Q  AILE+
Sbjct: 61  IAILRGSKNLKDAKACLME--GDISNIHFKTPGFDEDARK------LRFTEKQASAILEM 112

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L GL    +  E      +IKE   ILSS+  +  +IK++L  +K E  TPRRT I
Sbjct: 113 RLYKLIGLEILALEKEYKETLRKIKEYEKILSSKLTMDDVIKKDLEEIKTEFATPRRTLI 172

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            +G   + DE  +   ++V  +   GY K V  + Y   +   +G +  V          
Sbjct: 173 EDGKEAVYDETAVEIREVVFVMDKFGYGKLVDRATYDRNQETIEGENPHV---------- 222

Query: 581 FIVSTHT-SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPE 638
            I   +T  +  F+  G +++ K   +P G  + +G  + N+   +   ER   I+    
Sbjct: 223 -IPCLNTDKICLFTDTGLLHQVKASDIPFGKMRDKGTPVDNLCKFDGTKERPIFII---- 277

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           + S+     ++FATK   V+     +F + N     A KL   D ++S++      + +L
Sbjct: 278 NASALVGRRLLFATKEAMVKLVPGEEF-ETNNRMVAATKLQDGDMVVSIQLTDGRTEAVL 336

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD----YDERICY 754
            T  G  +RF +  I     +NS GVRGI L +G++ +    +L  D++    Y E+  +
Sbjct: 337 QTTNGVFLRFDLEEISTLK-KNSKGVRGIKLGRGEE-LEQVYLLGTDSEQTVMYKEKQVH 394

Query: 755 MKHMSAQRR 763
           +  +   +R
Sbjct: 395 LNRLKIGKR 403


>gi|218684027|gb|ACL00958.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPH ++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHCDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAH 140
           +DGD  AA RYTE RL K AH
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAH 81


>gi|255030685|ref|ZP_05302636.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 278

 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 156/308 (50%), Gaps = 41/308 (13%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           MVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R H+L GL  A++ LDEV
Sbjct: 1   MVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILE 459
           +++IR S +   A+  L                            T Y  SE Q  AI+ 
Sbjct: 61  IKLIRGSKDKRDAKLNLQ---------------------------TKYDFSEKQAEAIVS 93

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           L+L RLT     ++++E  SL  +I     IL   + L+ ++K+EL  +K +  T RRT 
Sbjct: 94  LQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTARRTE 153

Query: 520 IVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   +  + ++ E  +  ED++V+V+  GYVKR     Y A        + + M++ D  
Sbjct: 154 VQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS-----NGAELAMKEADHA 208

Query: 578 TDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITT--- 632
             +  +++  S+L F+S G F+Y+  V  LP    +  G  + ++ S L+ GE I +   
Sbjct: 209 IFIQKMNSLDSLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIA 267

Query: 633 IMPFPEDE 640
           I  F E++
Sbjct: 268 IQAFTEEK 275


>gi|62005849|dbj|BAD91316.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130102|gb|ACV95499.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130118|gb|ACV95507.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 63/81 (77%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+++IYD L RMAQ WSLR
Sbjct: 61  PHGDSSIYDTLVRMAQPWSLR 81


>gi|218684029|gb|ACL00959.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAH 140
           +DGD  AA RYTE RL K AH
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAH 81


>gi|5453230|gb|AAD43479.1| DNA gyrase subunit A [Staphylococcus simulans]
          Length = 81

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|311993263|ref|YP_004010129.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
 gi|284178101|gb|ADB81767.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
          Length = 460

 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 172/387 (44%), Gaps = 42/387 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N    +AI  +  RAIP+L DG KPV R ++   + +     +K+ K A ++G V   
Sbjct: 28  IDNEAKEFAIYTVENRAIPNLIDGFKPVQRFVIARALDLSRGNKEKFHKLASVAGGVADL 87

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY  CR+         
Sbjct: 88  GYHHGEGSAQDAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASRYIFCRISDN----FR 143

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            + KDT     + D     P       P VL+NG  GIA G AT I  H+   VV+ C  
Sbjct: 144 KVYKDTEIAPEHKDKEHVPPAFYLPIIPTVLLNGVQGIATGYATKILPHSFESVVE-CTK 202

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +     +D +  ++I   P F    V L             GSI  RG+      S    
Sbjct: 203 LALQGKLDKEPEVQI---PQFRGEVVRL-----------EDGSIECRGLYKFTSAS---- 244

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           Q+ ++EIP + ++   +EK+ E + +K  +      D+  + G+   ++ K+    D +L
Sbjct: 245 QMYISEIPAKFDRETYVEKVLEPMVDKNFISYV---DDCSKTGFGFKVKFKK----DYML 297

Query: 325 NQL---YRYTSLQSLFS--------VNMVALNGYKPERF-TLIGILKAFVAFREEVVVRR 372
            +    YR+  +   F         + ++  NG   ++F +   ++K FV  R+  +V+R
Sbjct: 298 GECDEKYRHEKIMRDFKLVEKMSQFIVVIDENGKLNDKFQSSSELIKHFVEVRKTYIVKR 357

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDE 399
            ++ + +  +   + +  A+ +  + E
Sbjct: 358 IEHKIKECDEAFKLALAKAMFIKEVIE 384


>gi|91093525|gb|ABE11584.1| ParC [Escherichia coli]
 gi|91093535|gb|ABE11589.1| ParC [Escherichia coli]
          Length = 105

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/104 (51%), Positives = 74/104 (71%), Gaps = 3/104 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 2   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 61

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGK 148
           R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+
Sbjct: 62  RYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQ 104


>gi|91093529|gb|ABE11586.1| ParC [Escherichia coli]
          Length = 107

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/104 (51%), Positives = 74/104 (71%), Gaps = 3/104 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 4   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 63

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGK 148
           R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+
Sbjct: 64  RYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQ 106


>gi|118139704|gb|ABK63298.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 64/81 (79%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 9   YKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R+ + A  +L DL KDTV
Sbjct: 69  TEARMTRIAEEVLRDLDKDTV 89


>gi|5453238|gb|AAD43487.1| DNA gyrase subunit A [Staphylococcus warneri]
          Length = 81

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 68/81 (83%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQ++S R  L++G
Sbjct: 61  IYEAMVRMAQEFSYRYPLVDG 81


>gi|124108803|gb|ABM90978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 60/73 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDG 122
           L++GQGNFGS+DG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|118139688|gb|ABK63290.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139692|gb|ABK63292.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139694|gb|ABK63293.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139700|gb|ABK63296.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139702|gb|ABK63297.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 64/81 (79%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 9   YKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R+ + A  +L DL KDTV
Sbjct: 69  TEARMTRIAEEVLRDLDKDTV 89


>gi|124108791|gb|ABM90972.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 60/73 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDG 122
           L++GQGNFGS+DG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|259130108|gb|ACV95502.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130126|gb|ACV95511.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 62/81 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+ +IYD L RMAQ WSLR
Sbjct: 61  PHGDISIYDTLVRMAQPWSLR 81


>gi|326536573|ref|YP_004301004.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
 gi|312262919|gb|ADQ53175.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
          Length = 450

 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 141/320 (44%), Gaps = 43/320 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM---QMGVEWNKKYV 72
           I   SI+  + N    +   VI+ RA+P L DGLKP  R +L+  +   Q G + N    
Sbjct: 3   IVERSISSYIDNEAKEFTFYVIVNRALPSLIDGLKPSQRFVLYSAIKTCQCGFKKN---- 58

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
             A + G +    +PHG  + +D  ++MA +++    ++EG+GNFGS      A  RY  
Sbjct: 59  --AYLCGVLSDYGYPHGETSAFDVASKMATEYANNYPVLEGRGNFGSRANRDAAEPRYIF 116

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           C+L    H    D+ KD      N   S+  P       P VL+NG  GIA   ATNIP 
Sbjct: 117 CKLNSNFH----DIFKDEDLLLDNEIVSYSIPKFYLPVIPFVLLNGVKGIASAYATNIPP 172

Query: 193 HNLGEVVDGCVAVI-----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           H++  V+D CV  +     DNP +   + +  +  PD              N   T  G 
Sbjct: 173 HDIHSVIDECVKYVKTGKCDNPKVKYPSFIGKVNTPD--------------NEQWTNEGV 218

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             ++G          + ++ + +IP+  ++   +    +L+   +IV   ++  E D   
Sbjct: 219 YELQG----------KTKLTIKDIPFSYDRIKYVSIRNKLIDSDQIVGYDEIEGEGDFT- 267

Query: 308 YRVVIELKRGASADVILNQL 327
           +RV ++     S + I+ + 
Sbjct: 268 FRVTLKRDFDTSHENIMAKF 287


>gi|259130104|gb|ACV95500.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130106|gb|ACV95501.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130120|gb|ACV95508.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130122|gb|ACV95509.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130124|gb|ACV95510.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 62/81 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+ +IYD L RMAQ WSLR
Sbjct: 61  PHGDRSIYDTLVRMAQPWSLR 81


>gi|118139698|gb|ABK63295.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A   L DL KDTV
Sbjct: 61  DNAAAMRYTEARMTRIAEEALRDLDKDTV 89


>gi|259130110|gb|ACV95503.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130130|gb|ACV95513.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|270055922|gb|ACZ59207.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 63/81 (77%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+++IY+ L RMAQ WSLR
Sbjct: 61  PHGDSSIYNTLVRMAQPWSLR 81


>gi|118139696|gb|ABK63294.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A   L DL KDTV
Sbjct: 61  DNAAAMRYTEVRMTRIAEEALRDLDKDTV 89


>gi|5453236|gb|AAD43485.1| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 81

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|5453246|gb|AAD43495.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|295315177|gb|ADF97676.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I+GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|23428783|gb|AAM21722.1| topoisomerase II subunit A [Legionella pneumophila]
          Length = 78

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 61/75 (81%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE R+ 
Sbjct: 4   IVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRMS 63

Query: 137 KAAHFLLDDLGKDTV 151
           K AH LL DL K+TV
Sbjct: 64  KVAHALLADLEKETV 78


>gi|5453251|gb|AAD43500.1| DNA gyrase subunit A [Staphylococcus lugdunensis]
          Length = 81

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVNG 81


>gi|259130114|gb|ACV95505.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 62/81 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+++IY  L RMAQ WSLR
Sbjct: 61  PHGDSSIYHTLVRMAQPWSLR 81


>gi|90017820|gb|ABD83866.1| topoisomerase IV subunit A [Haemophilus sp. COAD036]
 gi|90017822|gb|ABD83867.1| topoisomerase IV subunit A [Haemophilus sp. COAD165]
          Length = 99

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 3/100 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 1   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 59

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           TE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR
Sbjct: 60  TESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPAR 99


>gi|295315163|gb|ADF97669.1| gyrase subunit A [Campylobacter coli]
 gi|295315165|gb|ADF97670.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  110 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I+GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|118139690|gb|ABK63291.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 63/81 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 9   YKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R  + A  +L DL KDTV
Sbjct: 69  TEVRTTRIAEEVLRDLDKDTV 89


>gi|5453247|gb|AAD43496.1| DNA gyrase subunit A [Staphylococcus hominis]
 gi|5453248|gb|AAD43497.1| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 81

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|62005851|dbj|BAD91317.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130112|gb|ACV95504.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130128|gb|ACV95512.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 62/81 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+++IY  L RMAQ WSLR
Sbjct: 61  PHGDSSIYGTLVRMAQPWSLR 81


>gi|118139708|gb|ABK63300.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ +++DAL RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 9   YKKSARIVGDVIGKYHPHGDTSVHDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R+ + A  +L DL KDTV
Sbjct: 69  TEARMTRIAEEVLRDLDKDTV 89


>gi|5453240|gb|AAD43489.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453241|gb|AAD43490.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453242|gb|AAD43491.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453243|gb|AAD43492.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453244|gb|AAD43493.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453245|gb|AAD43494.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  110 bits (276), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|259130116|gb|ACV95506.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 62/81 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PH +++IYD L RMAQ WSLR
Sbjct: 61  PHCDSSIYDTLVRMAQPWSLR 81


>gi|40781641|gb|AAR89826.1| gyrase [Enterococcus gallinarum]
          Length = 80

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 63/80 (78%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGS 160
            +L D+ KDTVDF+ NYD +
Sbjct: 61  EMLRDINKDTVDFQSNYDDT 80


>gi|259130132|gb|ACV95514.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/81 (58%), Positives = 62/81 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLR 107
           PHG+++IY  L RMAQ WSLR
Sbjct: 61  PHGDSSIYYTLVRMAQPWSLR 81


>gi|5453252|gb|AAD43501.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 81

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ R AQD+S R  L++G
Sbjct: 61  IYEAMVRKAQDFSYRYPLVDG 81


>gi|65431837|gb|AAY42595.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 80

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 56/80 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYYTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPP 125
           LR  L++GQGNFGS   DPP
Sbjct: 61  LRYPLVDGQGNFGSPGNDPP 80


>gi|32453746|ref|NP_861955.1| DNA topisomerase II medium subunit [Enterobacteria phage RB69]
 gi|32350565|gb|AAP76164.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage RB69]
          Length = 441

 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 141/307 (45%), Gaps = 33/307 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S ++   + N  L YA+  +  RAIP++ DG KPV R ++   + +     +K+ K A
Sbjct: 3   LNSRNLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I+G V    + HG ++  DA A MA  W+    L++GQGNFGS      AA RY   R+
Sbjct: 63  SIAGGVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARV 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            K  +    ++ KDT ++ P + D     P       P VL+NG  GIA G ATNI  H+
Sbjct: 123 SKNFY----NVYKDT-EYAPAHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNILPHS 177

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV--ILGRTGIKNAYATGRGSIVIRG 252
              V    +  +   ++        +  P+F  G V  + GR  I   Y           
Sbjct: 178 FKSVKKAVLQALQGKNVTKPK----VEFPEF-RGEVHEVDGRYEIHGTYKF--------- 223

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                 TS  R Q+ +TEIPY+ ++   + K+ + + +K ++      D+    G+   +
Sbjct: 224 ------TS--RTQMQITEIPYKFDRETYVSKVLDPLEDKGLI---SWEDDCGEHGFGFKV 272

Query: 313 ELKRGAS 319
           + ++  S
Sbjct: 273 KFRKEYS 279


>gi|28629432|gb|AAO32079.1| topoisomerase IV [Acinetobacter genomosp. 3]
          Length = 109

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/110 (49%), Positives = 77/110 (70%), Gaps = 3/110 (2%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           LIEGQGN+GS D DP   AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 61  LIEGQGNWGSPD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|202073599|gb|ACH96270.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|202073601|gb|ACH96271.1| DNA gyrase subunit A [Waddlia chondrophila]
          Length = 82

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 57/82 (69%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KP  RRIL+ M  + +    K+ KCA+ISG+  G +HPHG   IY  L RMAQ W +R  
Sbjct: 1   KPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYR 60

Query: 110 LIEGQGNFGSVDGDPPAAERYT 131
           L++GQGNFGSVDGDPPAA RYT
Sbjct: 61  LVDGQGNFGSVDGDPPAAMRYT 82


>gi|3152711|gb|AAC17124.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 77

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 62/77 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAA 139
           D  AA+RYTE R+ K A
Sbjct: 61  DSAAAQRYTEARMSKIA 77


>gi|28629434|gb|AAO32080.1| topoisomerase IV [Acinetobacter genomosp. 13]
          Length = 109

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/110 (49%), Positives = 77/110 (70%), Gaps = 3/110 (2%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           LIEGQGN+GS D DP   AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 61  LIEGQGNWGSPD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|299779202|ref|YP_003734396.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
 gi|298105931|gb|ADI55575.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
          Length = 460

 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 136/297 (45%), Gaps = 42/297 (14%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ K A I+G V   
Sbjct: 30  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGGVADL 89

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  +A A MA  W+    L++GQGNFGS      AA RY   R+   ++F   
Sbjct: 90  GYHHGEGSAQEAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASRYIFARI--GSNFA-- 145

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            + KDT ++ P + D   + P       P VL+NG  GIA G ATNI  H+   V    +
Sbjct: 146 KVYKDT-EYAPVHADVEHKPPAFYLPIIPTVLLNGVSGIATGYATNILPHSFDSVKKAVL 204

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV--------IRGVSH 255
            V+    +                       T  K AY   RG +V        IRG   
Sbjct: 205 QVLQEKRV-----------------------TKPKVAYPEFRGEVVEIEPGSYEIRGTYK 241

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              TS  R Q+ +TEIPY+ ++   + KI + + +K  +   D  DE+   G++V I
Sbjct: 242 F--TS--RTQMHITEIPYKYDRETYVAKILDPLEDKGYITYDDDCDENGF-GFKVKI 293


>gi|325519491|gb|EGC98872.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 108

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/93 (51%), Positives = 71/93 (76%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G  ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF M +MG+  + K VK 
Sbjct: 16  GADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR
Sbjct: 76  ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLR 108


>gi|313633447|gb|EFS00274.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 404

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 23/305 (7%)

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           SE Q  AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K EL  +K
Sbjct: 1   SEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIK 60

Query: 510 DELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            +  TPRRT +   +  + ++ E  +  ED++V+V+  GYVKR     Y A    GK   
Sbjct: 61  KKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS--NGK--- 115

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALINILS-LN 625
            + M++ D    +  +++  ++L F+S G F+Y+  V  LP    +  G  + ++ S L+
Sbjct: 116 ELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVSHLASDLS 174

Query: 626 QGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDS 680
            GE I +   I  F E++        +F TK+G  +++ ++++ +  R  K  M  KL  
Sbjct: 175 AGEEIRSVIDIQTFTEEKR------FLFVTKNGMTKQSLITNY-KPQRYSKSMMGIKLKD 227

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            DE+LSV       DI L TK G  +R+PI+ I   +G  + GV+ I+L + D VI   +
Sbjct: 228 DDELLSVHLIDGTEDIFLATKNGYGLRYPIAEIPE-SGARTAGVKAINLKQDDTVIGGVV 286

Query: 741 VLHAD 745
           +  +D
Sbjct: 287 LTQSD 291


>gi|326536392|ref|YP_004300833.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
 gi|299483473|gb|ADJ19567.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
          Length = 442

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/385 (27%), Positives = 172/385 (44%), Gaps = 43/385 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +TD +      +A+  +  RAIP+L DGLKPV R +L   +Q+       Y K A ++G 
Sbjct: 8   LTDIINGEARDFALYTVENRAIPNLMDGLKPVQRFVLHRAIQLCKSKPDDYHKLAGVAGA 67

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
                + HG  +  DA A MA  W+    +++G+GNFGS      AA RY ECR+    H
Sbjct: 68  AASLGYHHGEVSAQDAGALMANTWNNNCPILDGKGNFGSRLVQKAAASRYIECRV----H 123

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
                  KDT     + D     P       P VL+NG  GI  G ATNI  H+   +++
Sbjct: 124 DNFRKYFKDTEVAPAHKDDDHIPPAYYLPIIPMVLINGVQGIGTGFATNILPHSEASIIE 183

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C  +     +D +  ++    P F  G V+      +N Y+   GS  + G + IE   
Sbjct: 184 -CTKLALQGKLDKEPQVQF---PQF-KGTVVCND---ENKYSL-FGSYKLIGKTQIE--- 231

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS- 319
                  +TEIPY+ ++A  +E   +++    +  I    D   + G+   ++L +  + 
Sbjct: 232 -------ITEIPYKYDRADYVENCLDILESDGL--IVSYDDNCGKHGFGFKVKLAKAFNL 282

Query: 320 --------ADVILNQLYRYTSLQSLFSVNMV-ALNGYKPERFTLIGILKAFVAFREEVVV 370
                   A ++     +    Q +++++ V AL G+ P   +LI     FV  R++ V 
Sbjct: 283 PEDEAKRHAYIVDKFKLKQDITQFIYTIDEVGALRGF-PNASSLI---HHFVEVRKQFVQ 338

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVA 395
            R    ++K  + A   + LAIA A
Sbjct: 339 AR----IDKKTEEARRNLQLAIAKA 359


>gi|115379153|ref|ZP_01466275.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115363848|gb|EAU62961.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score =  108 bits (271), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 69/92 (75%), Gaps = 1/92 (1%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARISG 79
           + +E +  YL YA++VI  RA+PD+RDGLKPV RR+L+GM     +  + KY K A++ G
Sbjct: 42  LAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQKSAKVVG 101

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
            +MG+YHPHG+A+IYDAL R+AQD+SLR  L+
Sbjct: 102 TIMGQYHPHGDASIYDALVRLAQDFSLRYPLV 133


>gi|161622523|ref|YP_001595383.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
 gi|160213829|gb|ABX11168.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
          Length = 442

 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 42/306 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +TS  +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ K A
Sbjct: 3   LTSRGLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I+G V    + HG  +  +A A MA  W+    L++GQGNFGS      AA RY   R+
Sbjct: 63  SIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARI 122

Query: 136 QKAAHFLLDDLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +F    + KDT ++ P + D   + P       P VL+NG  GIA G ATNI  H+
Sbjct: 123 --GTNFA--KVYKDT-EYAPVHADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPHS 177

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----- 249
              V    + V+    +                       T  K AY   RG +V     
Sbjct: 178 FDSVKKAVLQVLQEKRV-----------------------TKPKVAYPEFRGDVVEIEPG 214

Query: 250 ---IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +RG      TS  R Q+ +TEIPY+ ++   + K+ + + +K  +   D  DE+   
Sbjct: 215 SYELRGTYKF--TS--RTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGF- 269

Query: 307 GYRVVI 312
           G++V I
Sbjct: 270 GFKVKI 275


>gi|289677155|ref|ZP_06498045.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 82

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 62/79 (78%)

Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
          E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3  ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71 YVKCARISGEVMGKYHPHG 89
          Y K AR+ G+V+GKYHP G
Sbjct: 63 YKKSARVVGDVIGKYHPPG 81


>gi|62125793|gb|AAX63810.1| topoisomerase IV subunit A [Haemophilus quentini]
          Length = 106

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 3/103 (2%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--A 126
           +KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   A
Sbjct: 5   EKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFA 63

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           A RYTE RL K +  LL +L + TVD++PN+DG+  EP  L A
Sbjct: 64  AMRYTESRLSKISEILLSELEQGTVDYQPNFDGTLAEPQYLPA 106


>gi|60101260|gb|AAX13708.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  108 bits (270), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 56/65 (86%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECR 134
           YTE +
Sbjct: 61  YTEAQ 65


>gi|330721079|gb|EGG99218.1| DNA gyrase subunit A [gamma proteobacterium IMCC2047]
          Length = 225

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 112/245 (45%), Gaps = 56/245 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A   G V++  L +F +   SG IA+ LD  D +++V       DI+L +  G+C RF 
Sbjct: 1   MAMASGTVKKTSLMNFARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFA 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR + GVRGI L +G+++IS+                               
Sbjct: 61  EEDVRPM-GRTARGVRGIRLKEGERLISLI------------------------------ 89

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                          I +E  + L + E         G+GKRT   DF   NR G+G+ A
Sbjct: 90  ---------------IPQEGGRVLSVSEN--------GYGKRTEMTDFPSHNRGGQGVIA 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S+ N  G LV   PV D D+I+L+SDKGTL+R   + I I SR T+GV +   +K E
Sbjct: 127 MQTSERN--GELVGAVPVYDGDEIMLISDKGTLVRTRTDGISIVSRNTQGVSLIKVSKGE 184

Query: 890 RVVSV 894
           R+V V
Sbjct: 185 RLVGV 189



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 101/201 (50%), Gaps = 25/201 (12%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRD---EDFVTDLFIVSTHTSVLFFSSLGFV--YK 600
           G VK+  L  +   R      SG++  D   +D + ++ +      ++ FS+ G    + 
Sbjct: 6   GTVKKTSLMNFARPRS-----SGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFA 60

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           E+  R P+G   ARG   +  + L +GER+ +++  P++        V+  +++G  +R 
Sbjct: 61  EEDVR-PMGR-TARG---VRGIRLKEGERLISLI-IPQEGG-----RVLSVSENGYGKRT 109

Query: 661 KLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +++DF   NR G+  IAM+   R+ E++        ++I+L +  G  VR     I + +
Sbjct: 110 EMTDFPSHNRGGQGVIAMQTSERNGELVGAVPVYDGDEIMLISDKGTLVRTRTDGISIVS 169

Query: 718 GRNSVGVRGISLAKGDQVISM 738
            RN+ GV  I ++KG++++ +
Sbjct: 170 -RNTQGVSLIKVSKGERLVGV 189


>gi|308814624|ref|YP_003934898.1| topoisomerase II medium subunit [Shigella phage SP18]
 gi|308206216|gb|ADO19615.1| topoisomerase II medium subunit [Shigella phage SP18]
          Length = 443

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 27/293 (9%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L+YAI  + GRAIP++ DG KPVHR ++   + +      K+ K A I+G V    + HG
Sbjct: 17  LSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASIAGGVADYGYHHG 76

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
            A+  +A + +   +     + +GQGNFGS      ++ RY   R+ K  +    +L KD
Sbjct: 77  EASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVSKNFY----NLFKD 132

Query: 150 TVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           T ++ P + D   + P       P VL+N   GIAVG AT+I  H+  +V +   A+++ 
Sbjct: 133 T-EYAPVHPDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSFQDVKEAVKAIVEG 191

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
                + +   ++ P+F    V L   G    + T + +               R Q+ +
Sbjct: 192 ----REPVAPKVKYPEFRGEVVELEEPGKYELHGTYKMT--------------SRTQMEI 233

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           TEIP Q N      KI + + EK  +     +D     G+   I+ ++    D
Sbjct: 234 TEIPVQWNLEKYTSKILDPLEEKGFI---TWKDNCGEHGFGFKIKFRKEYKLD 283


>gi|314121841|ref|YP_004063960.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151598|gb|ADR32654.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 444

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 138/303 (45%), Gaps = 27/303 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ D +    L+YAI  + GRAIP++ DG KPVHR ++   + +      K+ K A I+G
Sbjct: 8   SLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASIAG 67

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            V    + HG A+  +A + +   +     + +GQGNFGS      ++ RY   R+ K  
Sbjct: 68  GVADYGYHHGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVSKNF 127

Query: 140 HFLLDDLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +    +L KDT ++ P + D   + P       P VL+N   GIAVG AT+I  H+  +V
Sbjct: 128 Y----NLFKDT-EYAPVHPDEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSFQDV 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            +   A+++      + +   ++ P+F    V L   G    + T + +           
Sbjct: 183 KEAVKAIVEG----REPVAPKVKYPEFRGEVVELEEPGKYELHGTYKMT----------- 227

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R Q+ +TEIP Q N      KI + + EK  +     +D     G+   I+ ++  
Sbjct: 228 ---SRTQMEITEIPVQWNLEKYTSKILDPLEEKGFI---TWKDNCGEHGFGFKIKFRKEY 281

Query: 319 SAD 321
             D
Sbjct: 282 KLD 284


>gi|22953852|gb|AAM21723.1| topoisomerase IV subunit A [Legionella pneumophila]
          Length = 106

 Score =  107 bits (268), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 3/104 (2%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +
Sbjct: 2   IADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPF 61

Query: 105 SLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDL 146
           S R   ++GQGN+GS D DP   AA RYTE RL   A  LL +L
Sbjct: 62  SYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSLYADVLLGEL 104


>gi|312183507|gb|ADQ42323.1| topoisomerase IV subunit A [Actinobaculum schaalii]
          Length = 93

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M QMG+  ++ +VK +R+ G+VMG+ HPHG+ AIYDA+ R+AQ +++RL L++G
Sbjct: 1   RRILFQMGQMGLRPDRAHVKSSRVVGDVMGRLHPHGDTAIYDAMVRLAQPFTMRLPLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
            GNFGS+D D PAA RYTE RL   A  ++  L
Sbjct: 61  HGNFGSLD-DGPAASRYTEARLAAPAMAMISSL 92


>gi|146743236|gb|ABQ42863.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 88

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 63/88 (71%)

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           IY  L R+AQ W++R  L++GQGNFGS   D PAA RYTECR+   A  ++ D+ ++TVD
Sbjct: 1   IYATLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRMTPLAMEMVRDIRENTVD 60

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           F PNYDG  QEP +L +R PN+L+NG G
Sbjct: 61  FSPNYDGKTQEPDILPSRVPNLLMNGSG 88


>gi|60101266|gb|AAX13711.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 55/65 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECR 134
           YTE +
Sbjct: 61  YTEAQ 65


>gi|60101264|gb|AAX13710.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 55/65 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECR 134
           YTE +
Sbjct: 61  YTEAQ 65


>gi|238695410|ref|YP_002922603.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
 gi|220029546|gb|ACL78480.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
          Length = 459

 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 135/297 (45%), Gaps = 42/297 (14%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ K A I+G V   
Sbjct: 29  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGGVADL 88

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  +A A MA  W+    L++GQGNFGS      AA RY   R+    +F   
Sbjct: 89  GYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFARI--GTNFA-- 144

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            + KDT ++ P + D   + P       P VL+NG  GIA G ATNI  H+   V    +
Sbjct: 145 KVYKDT-EYAPVHADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPHSFDSVKKAVL 203

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV--------IRGVSH 255
            V+    +                       T  K AY   RG +V        +RG   
Sbjct: 204 QVLQEKRV-----------------------TKPKVAYPEFRGDVVEIEPGSYELRGTYK 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              TS  R Q+ +TEIPY+ ++   + K+ + + +K  +   D  DE+   G++V I
Sbjct: 241 F--TS--RTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGF-GFKVKI 292


>gi|60651688|gb|AAX32855.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K +RI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSSRIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRL 135
           YTE  L
Sbjct: 61  YTEAHL 66


>gi|60651694|gb|AAX32858.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+  +YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRPVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRL 135
           YTE ++
Sbjct: 61  YTEAQI 66


>gi|60651686|gb|AAX32854.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTE 132
           YTE
Sbjct: 61  YTE 63


>gi|60651684|gb|AAX32853.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTE 132
           YTE
Sbjct: 61  YTE 63


>gi|60651692|gb|AAX32857.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 55/65 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECR 134
           YTE +
Sbjct: 61  YTEAQ 65


>gi|60101262|gb|AAX13709.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTE 132
           YTE
Sbjct: 61  YTE 63


>gi|60101276|gb|AAX13716.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 2   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 61

Query: 130 YTE 132
           YTE
Sbjct: 62  YTE 64


>gi|60101272|gb|AAX13714.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/63 (69%), Positives = 54/63 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTE 132
           YTE
Sbjct: 61  YTE 63


>gi|24020908|gb|AAN40849.1| GyrA [Streptococcus salivarius]
          Length = 76

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 60/76 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKAA 139
             AA+RYTE R+ K A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|169809390|gb|ACA84165.1| GyrA [Veillonella dispar]
          Length = 87

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 68/81 (83%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7  QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72 VKCARISGEVMGKYHPHGNAA 92
           K ARI+G+VMGKYHPHG+++
Sbjct: 67 KKSARITGDVMGKYHPHGDSS 87


>gi|90017824|gb|ABD83868.1| topoisomerase IV subunit A [Haemophilus sp. COAD591]
          Length = 99

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 70/100 (70%), Gaps = 3/100 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 1   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 59

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           TE RL K +  LL +LG+ TVD++ N+DG+  EP  L AR
Sbjct: 60  TESRLSKISEILLSELGQGTVDYQSNFDGTLAEPQYLPAR 99


>gi|24020910|gb|AAN40850.1| GyrA [Streptococcus mitis]
          Length = 76

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 60/76 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKAA 139
             AA+RYTE R+ K A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|161339333|gb|ABX64407.1| DNA topoisomerase IV [Streptococcus suis]
 gi|164612282|gb|ABY63610.1| topoisomerase IV [Streptococcus suis]
 gi|164612284|gb|ABY63611.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RYTE
Sbjct: 2   KSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            RL + +  LL D+ K+TVDF
Sbjct: 62  ARLSQLSGELLKDIDKNTVDF 82


>gi|124108793|gb|ABM90973.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGS 119
           L++GQGNFGS
Sbjct: 61  LVDGQGNFGS 70


>gi|3108059|gb|AAC15758.1| gyrase A [Enterococcus faecium]
          Length = 80

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/79 (59%), Positives = 62/79 (78%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM ++GV  +K + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFG
Sbjct: 1   GMNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFG 60

Query: 119 SVDGDPPAAERYTECRLQK 137
           SVDGD  AA RYTE R+ K
Sbjct: 61  SVDGDGAAAMRYTEARMSK 79


>gi|27542585|gb|AAO16893.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 76

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/76 (63%), Positives = 60/76 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGK 148
            RL K AH L+ DL K
Sbjct: 61  IRLAKIAHELMADLEK 76


>gi|312299479|gb|ADQ73655.1| GyrA [Neisseria meningitidis]
          Length = 80

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRL 135
           FGSVDG   AA RYTE R+
Sbjct: 61  FGSVDGLAAAAMRYTEIRM 79


>gi|24020904|gb|AAN40847.1| GyrA [Streptococcus mitis]
          Length = 75

 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 59/74 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQK 137
             AA+RYTE R+ K
Sbjct: 61  GAAAQRYTEARMSK 74


>gi|326581989|gb|ADZ96943.1| DNA gyrase A subunit [Klebsiella pneumoniae]
          Length = 134

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 15  NGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y  QRRGG
Sbjct: 75  ELELIRDQFGDKRRTEITANPADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEGQRRGG 134


>gi|164612286|gb|ABY63612.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 60/81 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RYTE
Sbjct: 2   KSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTE 61

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            RL + +  LL D+ K TVDF
Sbjct: 62  ARLSQLSGELLKDIDKSTVDF 82


>gi|5456790|gb|AAD43662.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456791|gb|AAD43663.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456793|gb|AAD43665.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456796|gb|AAD43668.1| topoisomerase IV subunit A [Staphylococcus warneri]
          Length = 82

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 62/81 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|175941427|gb|ACB72668.1| GyrA [Streptomyces sp. Fd 004]
          Length = 173

 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 26/199 (13%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM  
Sbjct: 1   WVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM-- 58

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                   G + + E+Q  AILE++L RL  L    I  E + L
Sbjct: 59  ------------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDEL 94

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E   IL S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VV
Sbjct: 95  QAKINEYNAILVSPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVV 154

Query: 541 TVSHLGYVKRVPLSVYRAQ 559
           T+S  GYVKR     YR+Q
Sbjct: 155 TISRGGYVKRTKTDDYRSQ 173


>gi|291290484|dbj|BAI83279.1| topoisomerase II medium subunit [Enterobacteria phage AR1]
          Length = 442

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 124/275 (45%), Gaps = 26/275 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I+G V   
Sbjct: 12  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADL 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K  +    
Sbjct: 72  GYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY---- 127

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           ++ KDT ++ P + D     P       P VL+NG  GIA G AT I  H++  V    +
Sbjct: 128 NVYKDT-EYAPVHQDKEHIPPAFYLPVIPTVLLNGVSGIATGYATYILPHSVSSVKKAVL 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +    +        +  P+F    V +             G   IRG      TS  R
Sbjct: 187 QALQGKKVTKPK----VEFPEFRGEVVEID------------GQYEIRGTYKF--TS--R 226

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            Q+ +TEIPY+ ++   + KI + + +K  +   D
Sbjct: 227 TQMHITEIPYKYDRETYVSKILDPLEDKGFITWDD 261


>gi|325663390|ref|ZP_08151840.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470844|gb|EGC74074.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 214

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 56/244 (22%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++  ++D+  + ++G  A+ L   DE++ V+    E DI++ TK GQC+RF    +R  
Sbjct: 1   MKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVR-S 59

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR S+GVRG++L+  D+VI M   LH   D                             
Sbjct: 60  TGRTSMGVRGMNLSDRDEVIGMQ--LHTQGD----------------------------- 88

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                 ++L  SEKG GKRT+  +F   NR GKG++   +++  
Sbjct: 89  ----------------------YLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE-- 124

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G ++ V  VN++++I++++ +G +IR+    I I  R   GV + +   + +V S+ +
Sbjct: 125 KTGNVIGVKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAK 184

Query: 897 IRES 900
           +RE+
Sbjct: 185 VRET 188


>gi|7243957|gb|AAB46847.2| topoisomerase II subunit A [Coxiella burnetii]
          Length = 106

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/100 (50%), Positives = 67/100 (67%), Gaps = 3/100 (3%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
            G     + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+
Sbjct: 8   FGPGFAHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAM 67

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
             MAQ +S R   ++GQGN+GS D DP   AA RYTE RL
Sbjct: 68  VLMAQPFSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARL 106


>gi|228861574|ref|YP_002854595.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|227438590|gb|ACP30903.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
          Length = 442

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 160/360 (44%), Gaps = 45/360 (12%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I+G V   
Sbjct: 12  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADL 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K  +    
Sbjct: 72  GYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY---- 127

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           ++ KDT ++ P + D     P       P VL+NG  GIA G AT I  H++  V     
Sbjct: 128 NVYKDT-EYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSV----- 181

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV-IRGVSHIEKTSG- 261
                      A+++ ++G            T  K  +   RG +V I G   I  T   
Sbjct: 182 ---------KKAVLQALQGKKV---------TKPKVEFPEFRGEVVEIDGQYEIRGTYKF 223

Query: 262 -DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R Q+ +TEIPY+ ++   + KI + + +K  +   D   E    G+   ++ ++  S 
Sbjct: 224 TSRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGE---HGFGFKVKFRKEYS- 279

Query: 321 DVILNQLYRYTSLQSLF------SVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRR 372
            +  N+  R+  +   F      S N+  +N  G       ++ ++K FV  R+  V +R
Sbjct: 280 -LCDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKR 338


>gi|315613996|gb|ADU52598.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 80

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRL 135
           FGSVDG   AA RYTE R+
Sbjct: 61  FGSVDGLAAAAMRYTEIRM 79


>gi|60651690|gb|AAX32856.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 53/62 (85%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 131 TE 132
           TE
Sbjct: 61  TE 62


>gi|228861192|ref|YP_002854215.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438866|gb|ACP31178.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 442

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 124/275 (45%), Gaps = 26/275 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I+G V   
Sbjct: 12  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADL 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K  +    
Sbjct: 72  GYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY---- 127

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           ++ KDT ++ P + D     P       P VL+NG  GIA G AT I  H++  V    +
Sbjct: 128 NVYKDT-EYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVL 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +    +        +  P+F    V +             G   IRG      TS  R
Sbjct: 187 QALQGKKVTKPK----VEFPEFRGEVVEID------------GQYEIRGTYKF--TS--R 226

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            Q+ +TEIPY+ ++   + KI + + +K  +   D
Sbjct: 227 TQMHITEIPYKYDRETYVSKILDPLEDKGFITWDD 261


>gi|60651678|gb|AAX32850.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTE 132
           YTE
Sbjct: 61  YTE 63


>gi|1542967|gb|AAB08037.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 69

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +
Sbjct: 1   KPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM 60

Query: 110 LIEGQGNFG 118
           L++G GNFG
Sbjct: 61  LVDGHGNFG 69


>gi|124108789|gb|ABM90971.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 70

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGS 119
           L++GQGNFGS
Sbjct: 61  LVDGQGNFGS 70


>gi|116326478|ref|YP_803198.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
 gi|115344071|gb|ABI95080.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
          Length = 442

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 124/275 (45%), Gaps = 26/275 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I+G V   
Sbjct: 12  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADL 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K  +    
Sbjct: 72  GYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY---- 127

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           ++ KDT ++ P + D     P       P VL+NG  GIA G AT I  H++  V    +
Sbjct: 128 NVYKDT-EYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVL 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +    +        +  P+F    V +             G   IRG      TS  R
Sbjct: 187 QALQGKKVTKPK----VEFPEFRGEVVEID------------GQYEIRGTYKF--TS--R 226

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            Q+ +TEIPY+ ++   + KI + + +K  +   D
Sbjct: 227 TQMHITEIPYKYDRETYVSKILDPLEDKGFITWDD 261


>gi|5712089|gb|AAD47358.1|AF038578_1 gyrase A subunit [Pseudomonas stutzeri]
          Length = 255

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 126/266 (47%), Gaps = 60/266 (22%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQ 704
           Y+  AT  G V++  L  F +   SG IA++L+  D +++  V  C QE  +++ +  G+
Sbjct: 6   YIFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCAQE--VMMFSDGGK 63

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF  S +R+  GR + GVRG+ L +G ++ISM I                 + AQ   
Sbjct: 64  VIRFKESKVRMM-GRTARGVRGMRLPEGQRIISMLI---------------PELGAQ--- 104

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              ILT S +G+GKRT+  +     R G
Sbjct: 105 -----------------------------------ILTASVRGYGKRTAMEEVPRRGRGG 129

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +G+ A   ++ N  GALV    V + ++I+L+SD+GTL+R  V+E+    R T+GV +  
Sbjct: 130 QGVIAMVTNERN--GALVGAVQVLEGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIK 187

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
             K+E +V +ER++E    D  E  E
Sbjct: 188 LGKNEHLVGLERVQEPSEEDVLEDVE 213


>gi|5456795|gb|AAD43667.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 82

 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 62/81 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSQLSEELLRDINKETVAF 81


>gi|8248357|gb|AAF74160.1|AF246741_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248359|gb|AAF74161.1|AF246742_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248361|gb|AAF74162.1|AF246743_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248363|gb|AAF74163.1|AF246744_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248365|gb|AAF74164.1|AF246745_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248369|gb|AAF74166.1|AF246747_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248371|gb|AAF74167.1|AF246748_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248373|gb|AAF74168.1|AF246749_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248375|gb|AAF74169.1|AF246750_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248377|gb|AAF74170.1|AF246751_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248379|gb|AAF74171.1|AF246752_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248381|gb|AAF74172.1|AF246753_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248387|gb|AAF74175.1|AF246756_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248393|gb|AAF74178.1|AF246759_1 DNA gyrase subunit A [Streptococcus sanguinis]
 gi|8248395|gb|AAF74179.1|AF246760_1 DNA gyrase subunit A [Streptococcus sanguinis]
          Length = 76

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 58/71 (81%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAA 139
           RYTE R+ K A
Sbjct: 61  RYTEARMSKIA 71


>gi|289677156|ref|ZP_06498046.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 80

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/79 (63%), Positives = 60/79 (75%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K
Sbjct: 1   GDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHK 60

Query: 149 DTVDFRPNYDGSFQEPVVL 167
           +TVD+ PNYDG+   P VL
Sbjct: 61  ETVDWVPNYDGTEMIPAVL 79


>gi|24020912|gb|AAN40851.1| GyrA [Streptococcus mitis]
          Length = 74

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA
Sbjct: 4   DKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAA 63

Query: 128 ERYTECRLQK 137
           +RYTE R+ K
Sbjct: 64  QRYTEARMSK 73


>gi|85707862|ref|ZP_01038928.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689396|gb|EAQ29399.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 156

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   + D +E   I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MAEPTTTDDSDEFDTIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
            Q+ ++ +  + K AR+ GEV+GKYHPHG+ A YDA+ R+AQ
Sbjct: 61  RQLKLDPSSGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQ 102


>gi|122893197|gb|ABM67555.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893205|gb|ABM67559.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 61/79 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 1   IGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 142 LLDDLGKDTVDFRPNYDGS 160
           +L D+ KDTVDF PNYD +
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|9632656|ref|NP_049875.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|1351263|sp|P07065|TOP5_BPT4 RecName: Full=DNA topoisomerase medium subunit; AltName:
           Full=Protein Gp52
 gi|5354280|gb|AAD42487.1|AF158101_74 gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|728620|emb|CAA27959.1| 52-protein [Enterobacteria phage T4]
 gi|299780622|gb|ADJ39984.1| DNA topoisomerase II medium subunit [Enterobacteria phage T4T]
          Length = 442

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 123/275 (44%), Gaps = 26/275 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I+G V   
Sbjct: 12  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADL 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K  +    
Sbjct: 72  GYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFY---- 127

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           ++ KDT ++ P + D     P       P VL+NG  GIA G AT I  H++  V    +
Sbjct: 128 NVYKDT-EYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVL 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +    +        +  P+F    V +             G   IRG      TS  R
Sbjct: 187 QALQGKKVTKPK----VEFPEFRGEVVEID------------GQYEIRGTYKF--TS--R 226

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            Q+ +TEIPY+ ++   + KI + +  K  +   D
Sbjct: 227 TQMHITEIPYKYDRETYVSKILDPLENKGFITWDD 261


>gi|330858778|ref|YP_004415153.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
 gi|327397712|gb|AEA73214.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
          Length = 442

 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 121/275 (44%), Gaps = 26/275 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I+G V   
Sbjct: 12  IDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGGVADL 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K  + +  
Sbjct: 72  GYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSKNFYSVYK 131

Query: 145 DLGKDTVDFRP-NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           D      ++ P + D     P       P VL+NG  GIA G AT I  H++  V    +
Sbjct: 132 D-----TEYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSVKKAVL 186

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +    +        +  P+F    V +             G   IRG      TS  R
Sbjct: 187 QALQGKKVTKPK----VEFPEFRGEVVEID------------GQYEIRGTYKF--TS--R 226

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            Q+ +TEIPY+ ++   + KI + + +K  +   D
Sbjct: 227 TQMNITEIPYKYDRETYVSKILDPLEDKGFITWDD 261


>gi|60101274|gb|AAX13715.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 42/62 (67%), Positives = 54/62 (87%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG++++Y+A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYNAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 131 TE 132
           TE
Sbjct: 61  TE 62


>gi|17932929|emb|CAC84126.1| ParC topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 91

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 3/90 (3%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S 
Sbjct: 3   DGLKPVQRRIIYSMSELGLNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSY 62

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECR 134
           R  LIEGQGNFGS D DP   AA RYTE R
Sbjct: 63  RYPLIEGQGNFGSSD-DPKSFAAMRYTESR 91


>gi|295315229|gb|ADF97702.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315233|gb|ADF97704.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315235|gb|ADF97705.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315237|gb|ADF97706.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315239|gb|ADF97707.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315241|gb|ADF97708.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315243|gb|ADF97709.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315245|gb|ADF97710.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315247|gb|ADF97711.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315249|gb|ADF97712.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315253|gb|ADF97714.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315255|gb|ADF97715.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315257|gb|ADF97716.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315259|gb|ADF97717.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315261|gb|ADF97718.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315263|gb|ADF97719.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315267|gb|ADF97721.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315271|gb|ADF97723.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315273|gb|ADF97724.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315277|gb|ADF97726.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315279|gb|ADF97727.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315281|gb|ADF97728.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315283|gb|ADF97729.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315285|gb|ADF97730.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315287|gb|ADF97731.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315289|gb|ADF97732.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315291|gb|ADF97733.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315293|gb|ADF97734.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315297|gb|ADF97736.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315299|gb|ADF97737.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315301|gb|ADF97738.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315303|gb|ADF97739.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315305|gb|ADF97740.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315307|gb|ADF97741.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315309|gb|ADF97742.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|60651682|gb|AAX32852.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 53/61 (86%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|161598231|gb|ABX74936.1| topoisomerase IV [Ureaplasma urealyticum]
          Length = 89

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA
Sbjct: 4   DKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAA 63

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDF 153
            RYTE RL K A  +L +L KD V F
Sbjct: 64  MRYTETRLSKIASVMLTNLKKDVVKF 89


>gi|5456781|gb|AAD43653.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 62/81 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G++HPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|8248383|gb|AAF74173.1|AF246754_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248389|gb|AAF74176.1|AF246757_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248391|gb|AAF74177.1|AF246758_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAA 139
           RYTE R+ K A
Sbjct: 61  RYTEARMSKIA 71


>gi|8248385|gb|AAF74174.1|AF246755_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYGAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAA 139
           RYTE R+ K A
Sbjct: 61  RYTEARMSKIA 71


>gi|9081881|gb|AAF82623.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 80

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|8248367|gb|AAF74165.1|AF246746_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 76

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/71 (61%), Positives = 57/71 (80%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAA 139
           RYTE R+ K A
Sbjct: 61  RYTEARMSKIA 71


>gi|9081883|gb|AAF82624.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 80

 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|5456789|gb|AAD43661.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 62/81 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  L+ D+ K+TV F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|295315227|gb|ADF97701.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315231|gb|ADF97703.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315251|gb|ADF97713.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315265|gb|ADF97720.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315269|gb|ADF97722.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315275|gb|ADF97725.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315295|gb|ADF97735.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|1498007|gb|AAB06320.1| DNA gyrase A subunit [Campylobacter lari subsp. lari]
          Length = 77

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+
Sbjct: 1   HRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSID 60

Query: 113 GQGNFGSVDGDPPAAER 129
           GQGNFGS+DGD  AA R
Sbjct: 61  GQGNFGSIDGDGAAAMR 77


>gi|4928201|gb|AAD33461.1|AF129762_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 56/67 (83%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 3   KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 62

Query: 133 CRLQKAA 139
            R+ K A
Sbjct: 63  ARMSKIA 69


>gi|122893195|gb|ABM67554.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893203|gb|ABM67558.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  103 bits (257), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 1   IGQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 142 LLDDLGKDTVDFRPNYDGS 160
           +L D+ KDTVDF PNYD +
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|5456797|gb|AAD43669.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  L+ D+ K+TV F
Sbjct: 61  AKLSQLSEELVRDINKETVSF 81


>gi|213579808|ref|ZP_03361634.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 277

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 26/236 (11%)

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  
Sbjct: 2   KVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTA 58

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR +
Sbjct: 59  LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTA 117

Query: 722 VGVRGISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            GVRGI LA  D+V+S+       AI+      Y +R    ++ +  R      T+ + S
Sbjct: 118 TGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVIS 172

Query: 775 LK---NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +K    + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+
Sbjct: 173 IKVTERNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 221



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 77/111 (69%), Gaps = 4/111 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    V+D DQI+++
Sbjct: 140 EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAVQVDDCDQIMMI 197

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+ E
Sbjct: 198 TDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDEE 246


>gi|60651676|gb|AAX32849.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|60651680|gb|AAX32851.1| GyrA [Riemerella anatipestifer]
 gi|60651698|gb|AAX32860.1| GyrA [Riemerella anatipestifer]
 gi|60651700|gb|AAX32861.1| GyrA [Riemerella anatipestifer]
 gi|60651702|gb|AAX32862.1| GyrA [Riemerella anatipestifer]
 gi|60651704|gb|AAX32863.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|325512972|gb|ADZ23659.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 92

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQ +SLR      QGNF S+DGD  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 1   DTIVRMAQPFSLRYCW-RWQGNFSSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 59

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 60  DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 92


>gi|9081885|gb|AAF82625.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 80

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 59/80 (73%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  + K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMYSSGNTFEKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|37651722|ref|NP_932596.1| gp52 [Aeromonas phage 44RR2.8t]
 gi|34733022|gb|AAQ81559.1| topoisomerase II medium subunit [Aeromonas phage 44RR2.8t]
          Length = 555

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 168/373 (45%), Gaps = 50/373 (13%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L +A+  +  RAIP L DGLKPV R  ++  ++   +   K+ K A ++G V    + HG
Sbjct: 124 LEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAGGVSEAGYHHG 183

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
             +   A   +A  W+  + ++EG GNFGS      AA RY  CR+    H    D+ +D
Sbjct: 184 EGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCRV----HQNFWDIYRD 239

Query: 150 TVDFRPNYDGSFQEPVVLCARY-----PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            ++  P +     EP  L  RY     P VL NG  GIA G ATNI  H+   ++    A
Sbjct: 240 -IELAPVHP----EPEHLPPRYYLPVIPMVLANGVKGIATGYATNIFPHSYKSLIKCTKA 294

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I+   I     +E+     FP  + ++ R   K        +I + G+  +   SG + 
Sbjct: 295 AIEGKPI---PRLEV----QFPEFSGVIRRVSAK--------TIEVEGLYEL---SG-QT 335

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR-------- 316
           ++ +TE+P + ++ + +  + +L  + +IV       E  + G+R  + LKR        
Sbjct: 336 KLTITELPVKFDRLSYVILLDKLKDQGKIVSY----KEQHKNGFRFDVTLKRQDKFGEQL 391

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTK 374
             + +    ++ +   L+ + + N+  LN  G   E      +++ FV  R +    R +
Sbjct: 392 QNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEHRRKFTAERVE 451

Query: 375 YLLNK---ARDRA 384
           Y   K   ARD A
Sbjct: 452 YERQKSEHARDLA 464


>gi|5456801|gb|AAD43673.1| topoisomerase IV subunit A [Staphylococcus lugdunensis]
          Length = 82

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKPVGNVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + A  LL D+ K+TV F
Sbjct: 61  AKLSQLAEELLRDINKETVSF 81


>gi|60101268|gb|AAX13712.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 52/63 (82%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KIFKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTE 132
           YTE
Sbjct: 61  YTE 63


>gi|4928203|gb|AAD33462.1|AF129763_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 3   KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 62

Query: 133 CRLQKAA 139
            R+ K A
Sbjct: 63  ARMSKIA 69


>gi|5456786|gb|AAD43658.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  L+ D+ K+TV F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|901985|gb|AAB60062.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 69

 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 56/69 (81%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 1   YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 60

Query: 131 TECRLQKAA 139
           TE RL K A
Sbjct: 61  TEIRLAKIA 69


>gi|9081887|gb|AAF82626.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 80

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILYAMYSSGNTFDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|310722215|ref|YP_003969039.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
 gi|306021058|gb|ADM79593.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
          Length = 547

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 160/367 (43%), Gaps = 39/367 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L +A+  +  RAIP + DG KPV R  ++  ++   +   K+ K A ++G V   
Sbjct: 112 INNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKVAALAGGVSEA 171

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +   A   +A  W+  + ++EG GNFGS      AA RY  CR+ +    +  
Sbjct: 172 GYHHGEGSAASAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCRVHQNFWDIYK 231

Query: 145 DLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           D+    V   P +    F  PV+     P VL NG  GIA G AT I  H+   +V   +
Sbjct: 232 DISLSPVHPDPEHLPPRFYLPVI-----PMVLANGVKGIATGYATTIFPHSYESLVKCTL 286

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A +   +I    +        FP    I+ R   K        SI I G+  +   +   
Sbjct: 287 AAVKGEEIPEPEVQ-------FPCFKGIVRRINSK--------SIEIEGLYELVGQT--- 328

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------ 317
            ++++TE+P + ++   +  + +L  + +IV       E    G+R  + LKR       
Sbjct: 329 -KLIITEVPVRYDRLEYVSILDKLEEQGKIVGYK----EQTSDGFRFEVTLKRQDKFGEL 383

Query: 318 --ASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +V   ++ +  +L+   S N+  L  NG   E      +++ FV +R++   +R 
Sbjct: 384 MEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVEYRKKYTNQRV 443

Query: 374 KYLLNKA 380
            +   KA
Sbjct: 444 IFEKEKA 450


>gi|66392041|ref|YP_238966.1| gp52 [Aeromonas phage 31]
 gi|62114878|gb|AAX63726.1| gp52 [Aeromonas phage 31]
          Length = 554

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 168/373 (45%), Gaps = 50/373 (13%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L +A+  +  RAIP L DGLKPV R  ++  ++   +   K+ K A ++G V    + HG
Sbjct: 124 LEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAGGVSEAGYHHG 183

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
             +   A   +A  W+  + ++EG GNFGS      AA RY  CR+    H    D+ +D
Sbjct: 184 EGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCRV----HQNFWDIYRD 239

Query: 150 TVDFRPNYDGSFQEPVVLCARY-----PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
            ++  P +     EP  L  RY     P VL NG  GIA G ATNI  H+   ++    A
Sbjct: 240 -IELAPVHP----EPEHLPPRYYLPVIPMVLANGVKGIATGYATNIFPHSYKSLIKCTKA 294

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            I+   I     +E+     FP  + ++ R   K        +I + G+  +   SG + 
Sbjct: 295 AIEGKPI---PRLEV----QFPEFSGVIRRVSDK--------TIEVEGLYEL---SG-QT 335

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR-------- 316
           ++ +TE+P + ++ + +  + +L  + +IV       E  + G+R  + LKR        
Sbjct: 336 KLTITELPVKFDRLSYVILLDKLKDQGKIVSYK----EQHKNGFRFDVTLKRQDKFGEQL 391

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTK 374
             + +    ++ +   L+ + + N+  LN  G   E      +++ FV  R +    R +
Sbjct: 392 QNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEHRRKFTAERVE 451

Query: 375 YLLNK---ARDRA 384
           Y   K   ARD A
Sbjct: 452 YERQKSEHARDLA 464


>gi|5456798|gb|AAD43670.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYNAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  L+ D+ K+TV F
Sbjct: 61  AKLSQLSEELVRDINKETVSF 81


>gi|34419516|ref|NP_899529.1| topoisomerase II small subunit [Vibrio phage KVP40]
 gi|34333197|gb|AAQ64352.1| topoisomerase II small subunit [Vibrio phage KVP40]
          Length = 428

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 172/378 (45%), Gaps = 43/378 (11%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA+  I  RA+ +  DGLKPV R +L+ +++   + +  + K A +   V    + HG
Sbjct: 14  LEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAALGSSVSKIGYNHG 70

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
             +  DALA MA +W   + +++G+GNFGS      A+ RY   +L    H   D   KD
Sbjct: 71  ETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKL----HDNFDLYFKD 126

Query: 150 TVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            +   P + D     P       P +L+NG  GIA G A NI  H+   V    +  +  
Sbjct: 127 -IHLSPEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEWVKKAVLEYLAG 185

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            +I       +++ P+F      L      N YA   G++ I G++            VV
Sbjct: 186 KEIS----EPVVKFPEFYGKIEKLEH----NKYAQ-IGTVEISGLT-----------AVV 225

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TEIP   + A  + ++ +LV + +I    D   E+    ++  +  KRGA   +    + 
Sbjct: 226 TEIPTGFDHAKYIIELDKLVEKGKISSYVDETSET----FQFRVRFKRGAK--MTEESVI 279

Query: 329 RYTSLQSLFSVNMVALN-GYKPERFTLI-GILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           +   LQS F+ N+  ++  Y+   F  +  ++K FV FR   + +R +    +   RA  
Sbjct: 280 KTLKLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRIQDSTERTEKRA-- 337

Query: 387 LVGLAIAVANLDEVVRII 404
               ++A+A ++ + R++
Sbjct: 338 ----SLAIAKVEFIKRVV 351


>gi|24020906|gb|AAN40848.1| GyrA [Streptococcus mitis]
          Length = 67

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 2   KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 61

Query: 133 CRLQK 137
            R+ K
Sbjct: 62  ARMSK 66


>gi|313760374|emb|CBY65971.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 54/78 (69%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G   ++ + K AR   E MG YHPHG+A+IY +L RMAQ WSLR  L++GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYASLVRMAQPWSLRYPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTE 132
           GNFGS   DPPAA RYTE
Sbjct: 61  GNFGSPGNDPPAAMRYTE 78


>gi|4566360|gb|AAD23314.1| topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
 gi|4566362|gb|AAD23315.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566368|gb|AAD23318.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566380|gb|AAD23324.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 58/77 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|5456780|gb|AAD43652.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G++HPHG+ ++YDA+ R++QDW LR +LIE  GN G++D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDFSVYDAMVRLSQDWKLRHVLIEMHGNNGNIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|313760372|emb|CBY65970.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760376|emb|CBY65972.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760378|emb|CBY65973.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 53/78 (67%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTE 132
           GNFGS   DPPAA RYTE
Sbjct: 61  GNFGSPGNDPPAAMRYTE 78


>gi|5456794|gb|AAD43666.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 82

 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSQLSEELLRDINKETVSF 81


>gi|121533295|ref|ZP_01665123.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
 gi|121307854|gb|EAX48768.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
          Length = 199

 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 56/245 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            ATK G V++ +L +F    + G IA+ LD  DE++ V+    E  ILL T+ G  + FP
Sbjct: 1   MATKKGIVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFP 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +RV  GR + GV+GI+L  GD V+ M  V                            
Sbjct: 61  ESQVRVM-GRTAHGVKGITLRDGDVVVGMDTV---------------------------- 91

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                 K D  V                   LTV+E G+GKRT   ++R  +R GKG+  
Sbjct: 92  ------KKDGHV-------------------LTVTEAGYGKRTPVEEYRQQSRGGKGLIN 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +++  + G ++ +  V    +++L++  G +IR  V+EI +  R T+GV + S  +++
Sbjct: 127 NKITE--KTGKVIGLKVVRPGQELMLITGDGVVIRTKVDEISVTGRNTQGVKVMSVGEND 184

Query: 890 RVVSV 894
           RVV++
Sbjct: 185 RVVAL 189



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR-SGVVMRDEDFVTDLFIVSTHTSV 589
           D + ++  V+TV+  GY KR P+  YR Q RGGKG  +  +      V  L +V     +
Sbjct: 89  DTVKKDGHVLTVTEAGYGKRTPVEEYRQQSRGGKGLINNKITEKTGKVIGLKVVRPGQEL 148

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           +  +  G V + KV  + +     +G   + ++S+ + +R+  +    +   S
Sbjct: 149 MLITGDGVVIRTKVDEISVTGRNTQG---VKVMSVGENDRVVALAAVDKKSDS 198


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 162/354 (45%), Gaps = 36/354 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R++++G  +  +  ++K  + A    EV   YH HG  ++   +  
Sbjct: 798  RSIPSMVDGLKPGQRKVIYGAFKRNLVNDQKVAELAGYISEVAA-YH-HGEVSLQQTIVG 855

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  ++++ 
Sbjct: 856  LAQTYVGSNNVNCLEPSGNFGSRLSGGSDAASARYIHTRLSPFARRIFSKLDEPNLEYQF 915

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC---VAVIDNPDID 212
            + DG+  EP V     P VLVNG  GI  G +T+IP ++  E+VD     +  +D  D +
Sbjct: 916  D-DGNMIEPKVYVPILPMVLVNGADGIGTGWSTSIPNYHPIEIVDNLKRRMGRLDPEDSE 974

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              A          P      G  G+    + G       G+  I++   +  +I VTE+P
Sbjct: 975  EKAFK--------PMTPWFRGWKGV--LESDGPNRYKFNGI--IQQDEQNPNEIHVTELP 1022

Query: 273  YQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRY 330
             ++       K+ +++R EK    I D R+ +D Q    +I+++ +   A +    L ++
Sbjct: 1023 IRMWTDDFKSKLEDILRAEKTPSFIKDYREFNDHQTVHFIIDMEDKHMKAALDEGLLEKF 1082

Query: 331  TSLQSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
               +S+ + N+VA N          PE      I++ F  +R  +   R K+ L
Sbjct: 1083 KLSKSMTTTNLVAFNTRGQIHKYENPEE-----IMEEFYHYRFNMYTERKKHWL 1131


>gi|69250185|ref|ZP_00605121.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
 gi|68193993|gb|EAN08553.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
          Length = 120

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 3   KNAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 62

Query: 86  HPHGNAAIYDALARMAQDWS--LRLLLIEGQG 115
           HPHG++A Y+A+  MAQ +S  +R L++ G G
Sbjct: 63  HPHGDSACYEAMVLMAQPFSTVIRWLMVRGTG 94


>gi|1053073|gb|AAA80683.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
          Length = 71

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 56/67 (83%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM
Sbjct: 2   ALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRM 61

Query: 101 AQDWSLR 107
            QD+S R
Sbjct: 62  VQDFSSR 68


>gi|4566370|gb|AAD23319.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566376|gb|AAD23322.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 57/77 (74%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 183/423 (43%), Gaps = 55/423 (13%)

Query: 11   EEEKGITSVSITDEMQNSYLTYA--IN---VILG-----RAIPDLRDGLKPVHRRILFGM 60
            E E G   +++ D  Q +Y+TY   I+   VI       RAIP   DGLKP  R++L+  
Sbjct: 658  EFEAGEDELTLYDREQINYVTYKDFIDKELVIFSHESCLRAIPCSADGLKPGQRKVLWTC 717

Query: 61   MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +     +K  VK A++SG V  M  YH HG  ++ D + ++AQ++  +  + L+E  G 
Sbjct: 718  FKRK---DKSKVKVAQLSGSVSEMSAYH-HGEVSLMDTIIKLAQNYVGANNVNLLEPFGQ 773

Query: 117  FGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS-FQEPVVLCARYPN 173
            FGS  V G   AA RY   RL      L  +   D   F+ NYD +   EP   C   P 
Sbjct: 774  FGSRRVGGKDHAAARYIFTRLAPITRKLYPEA--DDALFKRNYDDNRMVEPTHYCPIVPM 831

Query: 174  VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVIL 232
            VLVNG  GI  G +TNIP HN+ + +     +I+  + +DL    E  RG         +
Sbjct: 832  VLVNGSSGIGTGWSTNIPNHNIRDCIKNIRRMIEGKEPLDLVPFYEGYRG--------TI 883

Query: 233  GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---- 288
               G   A + G  +++   V            + +TE+P QV      +K+ ++     
Sbjct: 884  ESLGTARAVSFGEIALLESDV------------VEITELPPQVWTDDYKQKLMKMQGGQD 931

Query: 289  -REKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL--QSLFSVNMVAL 344
             + K +   I D  + S     + ++ +      +     L+ Y  L    +F+  MV  
Sbjct: 932  DKGKELPKLIEDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLF 991

Query: 345  N--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA-IAVANLDEVV 401
            N  G          I+K     R+   ++R  +LL K   R   +   A   + N+++ +
Sbjct: 992  NHAGKLTVYNNTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKI 1051

Query: 402  RII 404
             ++
Sbjct: 1052 TVM 1054


>gi|5456787|gb|AAD43659.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456788|gb|AAD43660.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 61/81 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  L+ D+ K+TV F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|312192217|gb|ADQ43805.1| DNA gyrase subunit A [Aerococcus sanguinicola]
          Length = 68

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 57/68 (83%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+GM ++GV  +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G 
Sbjct: 1   RILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGH 60

Query: 115 GNFGSVDG 122
           GNFGS+DG
Sbjct: 61  GNFGSIDG 68


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 183/423 (43%), Gaps = 55/423 (13%)

Query: 11   EEEKGITSVSITDEMQNSYLTYA--IN---VILG-----RAIPDLRDGLKPVHRRILFGM 60
            E E G   +++ D  Q +Y+TY   I+   VI       RAIP   DGLKP  R++L+  
Sbjct: 658  EFEAGEDELTLYDREQINYVTYKDFIDKELVIFSHESCLRAIPCSADGLKPGQRKVLWTC 717

Query: 61   MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +     +K  VK A++SG V  M  YH HG  ++ D + ++AQ++  +  + L+E  G 
Sbjct: 718  FKRK---DKSKVKVAQLSGSVSEMSAYH-HGEVSLMDTIIKLAQNYVGANNVNLLEPFGQ 773

Query: 117  FGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS-FQEPVVLCARYPN 173
            FGS  V G   AA RY   RL      L  +   D   F+ NYD +   EP   C   P 
Sbjct: 774  FGSRRVGGKDHAAARYIFTRLAPITRKLYPEA--DDALFKRNYDDNRMVEPTHYCPIVPM 831

Query: 174  VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVIL 232
            VLVNG  GI  G +TNIP HN+ + +     +I+  + +DL    E  RG         +
Sbjct: 832  VLVNGSSGIGTGWSTNIPNHNIRDCIKNIRRMIEGKEPLDLVPFYEGYRG--------TI 883

Query: 233  GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---- 288
               G   A + G  +++   V            + +TE+P QV      +K+ ++     
Sbjct: 884  ESLGTARAVSFGEIALLESDV------------VEITELPPQVWTDDYKQKLMKMQGGQD 931

Query: 289  -REKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL--QSLFSVNMVAL 344
             + K +   I D  + S     + ++ +      +     L+ Y  L    +F+  MV  
Sbjct: 932  DKGKELPKLIEDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLF 991

Query: 345  N--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA-IAVANLDEVV 401
            N  G          I+K     R+   ++R  +LL K   R   +   A   + N+++ +
Sbjct: 992  NHAGKLTVYNNTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKI 1051

Query: 402  RII 404
             ++
Sbjct: 1052 TVM 1054


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 177/375 (47%), Gaps = 36/375 (9%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  +S TD + N  + +++   L R+IP + DG+KP  R++++ +M+  +   KK VK  
Sbjct: 770  VAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNI---KKDVKVL 825

Query: 76   RISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
             ++G+V  +  YH HG+A+++  +  +AQD+  S  +  +E  GNFGS    G   ++ R
Sbjct: 826  DLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKGGADASSAR 884

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   RL   A  +        + +  + DG   EP V     P +L+NG  GI  G +T+
Sbjct: 885  YIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGADGIGTGWSTS 943

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            IP +N  ++VD    +I   +I    +    +G  F      LG    K        S +
Sbjct: 944  IPNYNPEDIVDNLKRMIRGEEI--KPMQPWFKG--FKGEVTQLGPDKYK-------FSGL 992

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGY 308
            I+ VS       D+E + VTE+P +      + K+ E+++  +    I D +D +     
Sbjct: 993  IKQVS-------DKE-LEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYKDYNTNSDV 1044

Query: 309  RVVIELKRGASADVILNQLY--RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
             +V++L      + +  +    ++   +++ + N+VA N  G   +   +  IL+ F   
Sbjct: 1045 HLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEEFYRL 1104

Query: 365  REEVVVRRTKYLLNK 379
            R +   +R ++ L++
Sbjct: 1105 RLKFYGKRKQHQLDQ 1119


>gi|60651696|gb|AAX32859.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 51/61 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|4566364|gb|AAD23316.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566366|gb|AAD23317.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566374|gb|AAD23321.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|1515475|gb|AAB06960.1| gyrase A [Enterococcus faecalis]
          Length = 73

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDG
Sbjct: 1   LGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDG 60

Query: 123 DPPAAERYTECRL 135
           D  AA RYTE R+
Sbjct: 61  DGAAAMRYTEARM 73


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
            [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
            nidulans FGSC A4]
          Length = 1709

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 177/375 (47%), Gaps = 36/375 (9%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  +S TD + N  + +++   L R+IP + DG+KP  R++++ +M+  +   KK VK  
Sbjct: 770  VAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNI---KKDVKVL 825

Query: 76   RISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
             ++G+V  +  YH HG+A+++  +  +AQD+  S  +  +E  GNFGS    G   ++ R
Sbjct: 826  DLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKGGADASSAR 884

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   RL   A  +        + +  + DG   EP V     P +L+NG  GI  G +T+
Sbjct: 885  YIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGADGIGTGWSTS 943

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            IP +N  ++VD    +I   +I    +    +G  F      LG    K        S +
Sbjct: 944  IPNYNPEDIVDNLKRMIRGEEI--KPMQPWFKG--FKGEVTQLGPDKYK-------FSGL 992

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGY 308
            I+ VS       D+E + VTE+P +      + K+ E+++  +    I D +D +     
Sbjct: 993  IKQVS-------DKE-LEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYKDYNTNSDV 1044

Query: 309  RVVIELKRGASADVILNQLY--RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
             +V++L      + +  +    ++   +++ + N+VA N  G   +   +  IL+ F   
Sbjct: 1045 HLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEEFYRL 1104

Query: 365  REEVVVRRTKYLLNK 379
            R +   +R ++ L++
Sbjct: 1105 RLKFYGKRKQHQLDQ 1119


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 167/366 (45%), Gaps = 43/366 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 791  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 836

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K +GD E + +T
Sbjct: 837  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDSE-VEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
            E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 328  YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
             ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++ + R  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTRLD 1004

Query: 386  VLVGLA 391
             L   A
Sbjct: 1005 KLSNQA 1010


>gi|289805577|ref|ZP_06536206.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 203

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 59/252 (23%)

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           ++V++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++ 
Sbjct: 11  DEVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKT 67

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR 
Sbjct: 68  ALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRT 126

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA GD  +   I+                                       
Sbjct: 127 ATGVRGIKLA-GDDKVVSLIIPRG------------------------------------ 149

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G+
Sbjct: 150 ----------------EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GS 191

Query: 841 LVAVFPVNDNDQ 852
           +V    V+D DQ
Sbjct: 192 VVGAVQVDDCDQ 203


>gi|109290217|ref|YP_656466.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
 gi|104345890|gb|ABF72790.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
          Length = 544

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 159/367 (43%), Gaps = 39/367 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           + N  L +A+  +  RAIP + DG KPV R  ++  ++   +   K+ K A ++G V   
Sbjct: 109 INNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKVAALAGGVSEA 168

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            + HG  +   A   +A  W+  + ++EG GNFGS      AA RY  CR+ +    +  
Sbjct: 169 GYHHGEGSAAGAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCRVHQNFWDIYK 228

Query: 145 DLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           D+    V   P +    F  PV+     P VL NG  GIA G AT I  H+   +V   +
Sbjct: 229 DISLSPVHPDPEHLPPRFYLPVI-----PMVLANGVKGIATGYATTIFPHSYESLVKCTL 283

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A +   +I    +        FP    I+ R   K        SI I G+  +   +   
Sbjct: 284 AAVKGEEIPEPEVQ-------FPCFKGIVRRINSK--------SIEIEGLYELVGQT--- 325

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------ 317
            ++++TE+P + ++   +  + +L  + +IV       E    G+R  + LKR       
Sbjct: 326 -KLIITEVPVRYDRLEYVSILDKLEEQGKIVGYK----EQTSDGFRFEVTLKRQDKFGEL 380

Query: 318 --ASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +V   ++ +  +L+   S N+  L  NG   E      +++ FV  R++   +R 
Sbjct: 381 MEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVEHRKKYTNQRV 440

Query: 374 KYLLNKA 380
            +   KA
Sbjct: 441 IFEKEKA 447


>gi|310722590|ref|YP_003969413.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
 gi|306021433|gb|ADM79967.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
          Length = 438

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 130/309 (42%), Gaps = 42/309 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T   I+  + N    +A+  I  RA+P + DGLKPV R IL+ +++      K + K A
Sbjct: 3   VTKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILYSVLKNA---GKSFKKNA 59

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I+G +    + HG  A  DA   MA  W+    +I+GQGNFGS      AA RY  C  
Sbjct: 60  AIAGVISEYGYNHGEVAAMDAACLMASTWNNNFPIIQGQGNFGSRAVQEGAAARYIFC-- 117

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
               H   D + KD      +     + P       P VL+NG  GIA G AT I  H+L
Sbjct: 118 --TKHDQFDSMFKDMELLEESTADGSELPRYYLPILPTVLLNGVSGIATGFATKILPHSL 175

Query: 196 GEVVDGCVAVI------DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
             V   CV  +      D P I             FP     +     KN   T  G   
Sbjct: 176 VSVAK-CVEQVLKTGKCDEPQI------------QFPLFYGKITPVVDKNQAWTLEGCYE 222

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES--DRQG 307
           + G          + ++ ++EIP + ++   +  + +LV   +IV      DES  D + 
Sbjct: 223 LSG----------KTKLTISEIPVKYDRVKYVTLLDKLVETDKIVGY----DESKMDDRE 268

Query: 308 YRVVIELKR 316
           +   I LKR
Sbjct: 269 FCFKITLKR 277


>gi|2598663|dbj|BAA23307.1| CfgyrA [Citrobacter freundii]
          Length = 65

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 53/65 (81%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAA 127
           D  AA
Sbjct: 61  DSAAA 65


>gi|2780355|dbj|BAA24278.1| GyrA subunit of Enterobacter cloacae DNA gyrase
          Length = 65

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAA 127
           D  AA
Sbjct: 61  DSAAA 65


>gi|5456783|gb|AAD43655.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456784|gb|AAD43656.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456785|gb|AAD43657.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 60/81 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  L+ D+ K+TV F
Sbjct: 61  AKLSQLSEELVRDINKETVAF 81


>gi|60101270|gb|AAX13713.1| GyrA [Riemerella anatipestifer]
 gi|60651672|gb|AAX32847.1| GyrA [Riemerella anatipestifer]
          Length = 61

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG++++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60


>gi|4566372|gb|AAD23320.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566378|gb|AAD23323.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 58/77 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   ++ +K   ++G V G   + HG+ +++  + 
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTMFKRNV---RRDIKVVELAGYVSGMTAYQHGDNSLHTTIV 732

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 733  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 792

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 793  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 838

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K +GD E + +T
Sbjct: 839  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIT 886

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       VI+++       +   L 
Sbjct: 887  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLE 946

Query: 329  -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 947  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1000


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   ++ +K   ++G V G   + HG+ +++  + 
Sbjct: 677  RSIPSVVDGLKPGQRKVLYTMFKRNV---RRDIKVVELAGYVSGMTAYQHGDNSLHTTIV 733

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 734  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 793

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 794  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 839

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K +GD E + +T
Sbjct: 840  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIT 887

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       VI+++       +   L 
Sbjct: 888  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLE 947

Query: 329  -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 948  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1001


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 165/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   ++ +K   ++G V G   + HG+ +++  + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNV---RRDIKVVELAGYVSGMTAYQHGDNSLHTTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 862  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 921

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 922  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 967

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K +GD E + +T
Sbjct: 968  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       VI+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLE 1075

Query: 329  -RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +   +  R+ T   IL+AF A R ++  +R +YLL++
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1129


>gi|323695898|gb|ADX99573.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 55/64 (85%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 100 MAQD 103
           MAQD
Sbjct: 61  MAQD 64


>gi|60651674|gb|AAX32848.1| GyrA [Riemerella anatipestifer]
          Length = 60

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   LKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 59


>gi|323695904|gb|ADX99576.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 67

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 55/66 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVH RIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHCRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQDWS 105
           MAQD+S
Sbjct: 61  MAQDFS 66


>gi|112383338|gb|ABI17809.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 2   IMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVAG 61

Query: 141 FLLDDLGKDTV 151
           +LL+D+ K TV
Sbjct: 62  YLLEDIEKKTV 72


>gi|194294671|gb|ACF40330.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 79

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 56/79 (70%)

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ AIY  + RMAQ WS+R  L++GQGNFGS   D PAA RYTE RL   A  ++ D+
Sbjct: 1   PHGDIAIYGTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARLTPLAMEMVRDI 60

Query: 147 GKDTVDFRPNYDGSFQEPV 165
            ++TVDF+PNYDG   EPV
Sbjct: 61  RENTVDFQPNYDGRTTEPV 79


>gi|118139706|gb|ABK63299.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 58/81 (71%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+ +GK+ PHG+ + +DAL RMAQ +S R  L++GQGNFG++DGD  AA RY
Sbjct: 9   YKKSARIVGDDIGKHQPHGDTSAHDALVRMAQSFSTRAPLVDGQGNFGTIDGDSAAATRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R+ + A   L DL KDTV
Sbjct: 69  TEARMTRIAEEELRDLDKDTV 89


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1717

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 155/351 (44%), Gaps = 41/351 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   KK +K   + G V G   + HG A++   + 
Sbjct: 810  RSIPSVVDGLKPGQRKVLYAMFKRNV---KKDMKVVELGGYVSGMTAYQHGEASLQQTIV 866

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A    H   + L K  
Sbjct: 867  GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFHAADEPLLKSN 926

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP V     P +L+NG  GI  G +T+IP  N  +VV     ++D   
Sbjct: 927  ID-----DGKVIEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDVVANLRRLMDGES 981

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            +              P      G TG      T  G       S I K +GD E + +TE
Sbjct: 982  L-------------VPMKPWFRGFTG----EVTASGDRY--KFSGIIKQTGDCE-VEITE 1021

Query: 271  IPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL-Y 328
            +P +       +K+ E+++ EK    I D +D +       +I++        + + L  
Sbjct: 1022 LPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNTHSKVHFIIQMDEKHMKKALEDGLEE 1081

Query: 329  RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            R+   +++ + NMVA +  G   +  T   ILKAF A R     +R ++LL
Sbjct: 1082 RFKLSKTIATTNMVAFDAEGRITKYDTAEDILKAFYAVRIRFYEKRKQHLL 1132


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 155/351 (44%), Gaps = 41/351 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   KK +K   + G V G   + HG A++   + 
Sbjct: 810  RSIPSVVDGLKPGQRKVLYAMFKRNV---KKDMKVVELGGYVSGMTAYQHGEASLQQTIV 866

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A    H   + L K  
Sbjct: 867  GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFHAADEPLLKSN 926

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP V     P +L+NG  GI  G +T+IP  N  +VV     ++D   
Sbjct: 927  ID-----DGKVIEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDVVANLRRLMDGES 981

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            +              P      G TG      T  G       S I K +GD E + +TE
Sbjct: 982  L-------------VPMKPWFRGFTG----EVTASGDRY--KFSGIIKQTGDCE-VEITE 1021

Query: 271  IPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL-Y 328
            +P +       +K+ E+++ EK    I D +D +       +I++        + + L  
Sbjct: 1022 LPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNTHSKVHFIIQMDEKHMKKALEDGLEE 1081

Query: 329  RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            R+   +++ + NMVA +  G   +  T   ILKAF A R     +R ++LL
Sbjct: 1082 RFKLSKTIATTNMVAFDAEGRITKYDTAEDILKAFYAVRIRFYEKRKQHLL 1132


>gi|37911071|gb|AAR04870.1| gyrase A [Campylobacter jejuni]
          Length = 77

 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 56/77 (72%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M     +    +VK ARI G V+G+YHPHG+AA+YDAL RMAQD+S+R   I GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQ 60

Query: 115 GNFGSVDGDPPAAERYT 131
           GNFGS+DGD  AA RYT
Sbjct: 61  GNFGSIDGDSAAAMRYT 77


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 155/351 (44%), Gaps = 41/351 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   KK +K   + G V G   + HG A++   + 
Sbjct: 727  RSIPSVVDGLKPGQRKVLYAMFKRNV---KKDMKVVELGGYVSGMTAYQHGEASLQQTIV 783

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A    H   + L K  
Sbjct: 784  GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARYIHTRLSPFARRIFHAADEPLLKSN 843

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP V     P +L+NG  GI  G +T+IP  N  ++V     ++D   
Sbjct: 844  ID-----DGKVIEPEVYVPVVPMILINGADGIGTGWSTSIPNFNPEDIVANLRRLMDGES 898

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            +              P      G TG      T  G       S I K +GD E + +TE
Sbjct: 899  L-------------VPMKPWFRGFTG----EVTASGDRY--KFSGIIKQTGDCE-VEITE 938

Query: 271  IPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL-Y 328
            +P +       +K+ E+++ EK    I D +D +       +I++        + + L  
Sbjct: 939  LPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNTHSKVHFIIQMDEKHMKKALEDGLEE 998

Query: 329  RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            R+   +++ + NMVA +  G   +  T   ILKAF A R     +R ++LL
Sbjct: 999  RFKLSKTIATTNMVAFDAEGRITKYDTAEDILKAFYAVRIRFYEKRKQHLL 1049


>gi|112383322|gb|ABI17801.1| topoisomerase IV [Streptococcus suis]
 gi|112383324|gb|ABI17802.1| topoisomerase IV [Streptococcus suis]
 gi|112383326|gb|ABI17803.1| topoisomerase IV [Streptococcus suis]
 gi|112383328|gb|ABI17804.1| topoisomerase IV [Streptococcus suis]
 gi|112383330|gb|ABI17805.1| topoisomerase IV [Streptococcus suis]
 gi|112383332|gb|ABI17806.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 2   IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 141 FLLDDLGKDTV 151
           +LL D+ K TV
Sbjct: 62  YLLADIEKKTV 72


>gi|323695900|gb|ADX99574.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQD 103
           MAQD
Sbjct: 61  MAQD 64


>gi|8248355|gb|AAF74159.1|AF246740_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEMAGYLLQDI 72


>gi|323695902|gb|ADX99575.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 66

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ 
Sbjct: 2   ARALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMV 61

Query: 99  RMAQD 103
           RMAQD
Sbjct: 62  RMAQD 66


>gi|312877897|ref|ZP_07737842.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795323|gb|EFR11707.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 237

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 61/297 (20%)

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS QA+G A++N++ + + E+IT  M   +    +   Y++  TK+G +++  LS+F
Sbjct: 1   MPEGSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEF 56

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +RV  GR++ GV+
Sbjct: 57  ENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVM-GRSAQGVK 115

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++L  GD ++ M      D  Y   +C  ++   +R  I                    
Sbjct: 116 GMTLESGDFIVGME--KANDGKY--LLCVTENGFGKRSEI-------------------- 151

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             E  ++ K   + +LT              +++++++GK               +V + 
Sbjct: 152 --EEYRKTKRGAKGVLT--------------YKVTDKTGK---------------IVDIK 180

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
            VND+D+I++ S +G  IR+ V+++ +  R T+GV +     D  +V S+ RI+  E
Sbjct: 181 MVNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDGDSIKVSSIARIKAEE 237


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 161/364 (44%), Gaps = 38/364 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG+A++   + 
Sbjct: 803  RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMKVVELAGHVSGMTAYQHGDASLQQTIV 859

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +        + + 
Sbjct: 860  GLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRMFHAADDPLLTYN 919

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P +L+NG  GI  G +++IP +N  ++VD    ++D+      
Sbjct: 920  ED-DGKKIEPEVYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDS------ 972

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                    P  P      G TG   A    R        S I K +GD+E + +TE+P +
Sbjct: 973  -------QPVKPMQPWFRGFTGEVTALGGDRFKF-----SGIIKETGDKE-VEITELPIR 1019

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +K+ E+++ EK    I D +D +       VI++        +   L     L
Sbjct: 1020 TWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKNIKSAVAEGLEEKFKL 1079

Query: 334  -QSLFSVNMVALNGYKPE-RFTLIG----ILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +++ + N+VA +   PE R T       ILK F A R +   RR +Y L++ +     L
Sbjct: 1080 SKTIATTNLVAFD---PEGRITKYASVDDILKEFYAVRLKFYERRKQYQLSELQKELDKL 1136

Query: 388  VGLA 391
               A
Sbjct: 1137 TNQA 1140


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMVGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMVGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|112383354|gb|ABI17817.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 2   IMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVAG 61

Query: 141 FLLDDLGKDTV 151
           +LL D+ K TV
Sbjct: 62  YLLADIEKKTV 72


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMVGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   KK +K   ++G V G   + HG+ +++  + 
Sbjct: 675 RSIPSVVDGLKPGQRKVLYTMFKRNV---KKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 731

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 732 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLANN 791

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 792 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 837

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K +GD E + ++
Sbjct: 838 -----LKRLMAGDELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIS 885

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 886 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 945

Query: 328 YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R ++LL++
Sbjct: 946 EKFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSE 999


>gi|8248317|gb|AAF74140.1|AF246721_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248319|gb|AAF74141.1|AF246722_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248321|gb|AAF74142.1|AF246723_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248323|gb|AAF74143.1|AF246724_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248327|gb|AAF74145.1|AF246726_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248331|gb|AAF74147.1|AF246728_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248333|gb|AAF74148.1|AF246729_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|112383340|gb|ABI17810.1| topoisomerase IV [Streptococcus suis]
 gi|112383342|gb|ABI17811.1| topoisomerase IV [Streptococcus suis]
 gi|112383344|gb|ABI17812.1| topoisomerase IV [Streptococcus suis]
 gi|112383346|gb|ABI17813.1| topoisomerase IV [Streptococcus suis]
 gi|112383348|gb|ABI17814.1| topoisomerase IV [Streptococcus suis]
 gi|112383350|gb|ABI17815.1| topoisomerase IV [Streptococcus suis]
 gi|112383352|gb|ABI17816.1| topoisomerase IV [Streptococcus suis]
 gi|112383356|gb|ABI17818.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 2   IMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 141 FLLDDLGKDTV 151
           +LL D+ K TV
Sbjct: 62  YLLADIEKKTV 72


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 164/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 862  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 921

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 922  ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 967

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 968  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  -RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +   +  R+ T   IL+AF A R ++  +R +YLL++
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1129


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   KK +K   ++G V G   + HG+ +++  + 
Sbjct: 803  RSIPSVVDGLKPGQRKVLYTMFKRNV---KKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 859

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 860  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLANN 919

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 920  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 965

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K +GD E + ++
Sbjct: 966  -----LKRLMAGDELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIS 1013

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
            E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 1014 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 1073

Query: 328  YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R ++LL++
Sbjct: 1074 EKFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSE 1127


>gi|112383334|gb|ABI17807.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 54/71 (76%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 2   IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 141 FLLDDLGKDTV 151
           +LL D+ K TV
Sbjct: 62  YLLADIEKKTV 72


>gi|237511975|gb|ACQ99700.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 77

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 51/75 (68%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA 
Sbjct: 1   RSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAM 60

Query: 129 RYTECRLQKAAHFLL 143
           RYTE RL   A  +L
Sbjct: 61  RYTEARLTPLAMEML 75


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 732

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 733  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 792

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 793  ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 838

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 839  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 886

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 887  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 946

Query: 329  -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 947  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1000


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   KK +K   ++G V G   + HG+ +++  + 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTMFKRNV---KKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 728

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 729 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 788

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 789 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 834

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K +GD E + ++
Sbjct: 835 -----LKRLMAGDELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIS 882

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 883 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 942

Query: 328 YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R ++LL++
Sbjct: 943 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSE 996


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 166/367 (45%), Gaps = 44/367 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHATIV 728

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 729  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 788

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP       P VL+NG  GI  G +T+IP +N  EVVD          
Sbjct: 789  ID-----DGKVIEPETYVPVVPLVLINGADGIGTGWSTSIPNYNPEEVVDN--------- 834

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K +GD E + +T
Sbjct: 835  -----LKRLMAGDELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIT 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIE--LKRGASADVILNQ 326
            E+P +       +K+ ++++ +++   I D RD +       +I+  +K      V    
Sbjct: 883  ELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYRDYNTHTNVHFIIQSGVKNTVKKAVEDGL 942

Query: 327  LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
              R+  ++ + + NMVA +  G      T   IL+AF A R ++  +R ++LL++ + + 
Sbjct: 943  EERFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSQLQSQL 1002

Query: 385  HVLVGLA 391
              L   A
Sbjct: 1003 EKLTNQA 1009


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I++        +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMDEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 159/351 (45%), Gaps = 28/351 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R+++F   +  +  +KK V+ A    E    YH HG A++   +  
Sbjct: 813  RSIPSMIDGLKPGQRKVIFACFKQNLVKDKKVVELAGYVSEKAA-YH-HGEASLQQTIIG 870

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  + + L +  +  + 
Sbjct: 871  LAQNYVGSNNVNCLEPSGNFGSRLQGGSDAASARYIHTRLSPFARRVFNPLDEPVLQHQV 930

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
            + DG   EP V     P VLVNG  GI  G +T+IP ++  E+V      +   D+  + 
Sbjct: 931  D-DGKAIEPKVYAPVIPMVLVNGADGIGTGWSTSIPNYHPEEIVRNIKRRMGRLDVPEEQ 989

Query: 216  LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
              E       P      G  G        R      G+++++  + +  ++V+TE+P ++
Sbjct: 990  EFE-------PMTPWWRGWKGTPEPEDASRIRFKFNGIANLDDKNPN--EVVITELPIRM 1040

Query: 276  NKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGA------SADVILNQLY 328
                   ++ E++R EK    I D ++ +D +    +I+L          S +++L    
Sbjct: 1041 WTDDFKARLEEIIRAEKTPSWIKDYKEFNDHKNVHFIIQLDEKHMKEFRDSPNLLLE--- 1097

Query: 329  RYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            R+   +++   N+VA   NG   +   +  IL+ F  +R  V   R  + L
Sbjct: 1098 RFKLQKNVAITNLVAFDTNGQIRKYDKVEDILEEFYHYRLNVYAARKAHWL 1148


>gi|262411034|gb|ACY66883.1| GyrA [Salmonella enterica]
          Length = 64

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD++ RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPF 60

Query: 105 SLR 107
           SLR
Sbjct: 61  SLR 63


>gi|260890949|ref|ZP_05902212.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859502|gb|EEX74002.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 196

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 55/246 (22%)

Query: 665 FIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F  I ++GK A+KL+  DE++   + + T E+++   T+ G  +RF    +R   G  + 
Sbjct: 2   FDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSM-GTGAA 60

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI+L   D+++  AI+                                         
Sbjct: 61  GVKGITLRDKDKIVGAAII----------------------------------------- 79

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGAL 841
                    E+   E  ILT++E+G+GKRT   ++R+++R GKGI     +K+N+  G +
Sbjct: 80  -------NSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIIN---AKLNDKTGKI 129

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V V  V +ND+I+L++ +GTLIR  VN + +  R+  GV I     +E++ SV +I E  
Sbjct: 130 VDVKIVTENDEIMLITSEGTLIRTSVNNVSVIGRSASGVRIMKVRNNEKIASVVKITEEP 189

Query: 902 IVDEAE 907
            + E E
Sbjct: 190 ELSEDE 195



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF-VTDLFIVSTHTSVLFFSSLGF 597
           ++T++  GY KR  LS YR   RGGKG     + D+   + D+ IV+ +  ++  +S G 
Sbjct: 90  ILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLNDKTGKIVDVKIVTENDEIMLITSEGT 149

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           + +  V  + +    A G   + I+ +   E+I +++   E+
Sbjct: 150 LIRTSVNNVSVIGRSASG---VRIMKVRNNEKIASVVKITEE 188



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 641 SSWNN--LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKL-DSRDEILSVETCTQEND 695
           S  NN  + ++  T+ G  +R KLS++   +R GK  I  KL D   +I+ V+  T+ ++
Sbjct: 81  SEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLNDKTGKIVDVKIVTENDE 140

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           I+L T  G  +R  ++ + V  GR++ GVR + +   +++ S+
Sbjct: 141 IMLITSEGTLIRTSVNNVSVI-GRSASGVRIMKVRNNEKIASV 182


>gi|5456802|gb|AAD43674.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 82

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 60/81 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++Q W L  +LIE QGN GS+D DP AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSRISEELLRDINKETVPF 81


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 164/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 862  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLLVNN 921

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 922  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 967

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 968  -----LKRLMVGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  -RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +   +  R+ T   IL+AF A R ++  +R +YLL++
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1129


>gi|403953|gb|AAB01009.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 98

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++VIR    IE+  
Sbjct: 1   GLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVEIEQLQ 60

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
             R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+
Sbjct: 61  -TRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADI 98


>gi|8248339|gb|AAF74151.1|AF246732_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248351|gb|AAF74157.1|AF246738_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|1017803|gb|AAA79196.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 63

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA
Sbjct: 1   DKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAA 60

Query: 128 ERY 130
           +RY
Sbjct: 61  QRY 63


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 166/357 (46%), Gaps = 49/357 (13%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 728

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 729 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 788

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 789 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 834

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K +GD E + ++
Sbjct: 835 -----LKRLMAGDELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIS 882

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 883 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 942

Query: 328 YRYTSLQSLFSVNMVALNGYKPE----RF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +   PE    R+ T   IL+AF A R ++  +R ++LL++
Sbjct: 943 EKFKLVKQIATSNMVAFD---PEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSE 996


>gi|312207859|pdb|3KUA|A Chain A, Ccdbvfi:gyra14vfi
 gi|312207860|pdb|3KUA|B Chain B, Ccdbvfi:gyra14vfi
          Length = 153

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 10/138 (7%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   + RRT + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P  A+  L+ R W+ 
Sbjct: 17  RGSHMTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDL 76

Query: 425 SDIKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            ++  +++            +  + I  +G  +L+E Q +AILELRL RLTGL  + I +
Sbjct: 77  GNVASMLERAGTDAARPDWLEPEFGI-REGKYFLTEQQAQAILELRLHRLTGLEHEKILD 135

Query: 476 ELNSLGIEIKECLDILSS 493
           E  +L  EI E + IL+S
Sbjct: 136 EYKALLDEIAELMHILAS 153


>gi|8248341|gb|AAF74152.1|AF246733_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248345|gb|AAF74154.1|AF246735_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248347|gb|AAF74155.1|AF246736_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|4928191|gb|AAD33456.1|AF129757_1 DNA topoisomerase IV subunit C [Streptococcus oralis ATCC 35037]
 gi|4928195|gb|AAD33458.1|AF129759_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|4928197|gb|AAD33459.1|AF129760_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 74

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/74 (55%), Positives = 55/74 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKAAHF 141
            RYTE RL + A +
Sbjct: 61  MRYTEARLSEIAGY 74


>gi|4928193|gb|AAD33457.1|AF129758_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis SK1]
          Length = 74

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/74 (55%), Positives = 55/74 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKAAHF 141
            RYTE RL + A +
Sbjct: 61  MRYTEARLSEMAGY 74


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 165/366 (45%), Gaps = 42/366 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   +K +K   ++G V G   + HG+A++   + 
Sbjct: 731  RSIPSVVDGLKPGQRKVLYTCFRRNL---RKDMKVVELAGHVSGMTAYQHGDASLQQTIV 787

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +        + + 
Sbjct: 788  GLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRVFHAADDPLLTYN 847

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P +L+NG  GI  G +++IP +N  ++VD    ++D       
Sbjct: 848  ED-DGKKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDG------ 900

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                    P  P      G TG   A    R        S I K +GD+E + +TE+P +
Sbjct: 901  -------QPVKPMQPWFRGFTGEVTALGGDRFKF-----SGIIKETGDKE-VEITELPIR 947

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRG---ASADVILNQLYRY 330
                   +K+ E+++ EK    I D +D +       VI++      ++ +  L + ++ 
Sbjct: 948  TWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKL 1007

Query: 331  TSLQSLFSVNMVALNGYKPE-RFTLIG----ILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +  +++ + N+VA +   PE R T       ILK F A R +   RR +Y LN+ +    
Sbjct: 1008 S--KTIATTNLVAFD---PEGRITKYASVDDILKEFYAVRLKFYERRKQYQLNELQKELD 1062

Query: 386  VLVGLA 391
             L   A
Sbjct: 1063 KLTNQA 1068


>gi|8248325|gb|AAF74144.1|AF246725_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 72

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 174/396 (43%), Gaps = 37/396 (9%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            V+ITD + N  + ++ N    R+IP + DGLKP  R+ILF  ++  +   K  +K A+++
Sbjct: 668  VTITDFINNELILFS-NQNNIRSIPSIVDGLKPSQRKILFACLKRDL---KDEIKVAQLA 723

Query: 79   GEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
            G V     YH HG  ++Y  +  MAQD+  +  + L+   G FG+    GD  A+ RY  
Sbjct: 724  GYVSEHSAYH-HGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIY 782

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL K    +        +D++   DG   EP       P +LVNG  G+  G +T+IP+
Sbjct: 783  TRLNKLTRLIFLKEDDQILDYQEE-DGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPS 841

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG-RGSIVIR 251
             N        + +ID+ +I LD+  E I     P  ++ +   G K        G  + +
Sbjct: 842  FN-------PIDLIDSLNILLDSNAENIGNVKLP--SLDMWARGFKGKIEMNDSGKFISK 892

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            G+  + K+ GD  +  ++E+P           +  LV++  I      R+  +  G+ + 
Sbjct: 893  GIFKM-KSRGDSIEFDISELPIGEWTENYKSHLQSLVKKGLIKSKITERNTENSVGFTIA 951

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I        D       +   L+  FS+ NM   +    E F +I         ++  +V
Sbjct: 952  IN-----DPDEFSESQLKKLKLEKSFSLSNMTVFS----ENFDIIQFSNVNDIIKQFYLV 1002

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            R + Y     + ++H++  L   +  L   V+ + F
Sbjct: 1003 RLSYY----HQRKSHLMKQLEKQIRILSNKVKFLNF 1034


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 161/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 837 -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P         +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|4928199|gb|AAD33460.1|AF129761_1 DNA topoisomerase IV subunit C [Streptococcus constellatus]
          Length = 74

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/74 (55%), Positives = 55/74 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKAAHF 141
            RYTE RL + A +
Sbjct: 61  MRYTEARLSEIAGY 74


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            S++ TD +    + +++   + R+IP + DGLKP  R++++   +  +  ++K V+ A  
Sbjct: 779  SITYTDFVNKELILFSMADNM-RSIPSVVDGLKPGQRKVIYACFKRNLVKDQKVVELAGY 837

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
              E    YH HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY   
Sbjct: 838  ISEQTS-YH-HGEVSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHT 895

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  +   L  D  +  P Y DG   EP V     P +L NG  GI  G +T+IP 
Sbjct: 896  RLSPFARKIFSPL--DEPNLEPQYEDGKRIEPKVYAPIIPMILCNGADGIGTGWSTSIPN 953

Query: 193  HNLGEVVDGCVAVID--NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            ++  ++V+     +   +P    DA  +       P      G  G        R     
Sbjct: 954  YHPIDIVNNLKRRMGRLDPSNPEDAAFQ-------PMMPWFRGWKGTPEQSEKDR--YKF 1004

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYR 309
             G+  I++ +G   +++VTE+P ++       K+ E++   K  V I D ++ +D +   
Sbjct: 1005 NGICEIDERTG---EVIVTELPIRMWTDDFKAKLEEVISGTKGPVWIKDYKEFNDHKNVH 1061

Query: 310  VVIELKRGASADVILNQLY-RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFRE 366
             VI++    + D++ + L  R+   + + + N+VA +  G   +   +  IL+ F  +R 
Sbjct: 1062 FVIQMDDKHTKDILADGLLERFKLSKQIATSNLVAFDTRGQIRKYEKVEDILEEFYNYRL 1121

Query: 367  EVVVRRTKYLL 377
            ++  +R K+ L
Sbjct: 1122 DMYAQRKKHWL 1132


>gi|8248329|gb|AAF74146.1|AF246727_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 162/354 (45%), Gaps = 42/354 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   +K +K   ++G V G   + HG+A++   + 
Sbjct: 731  RSIPSVVDGLKPGQRKVLYTCFRRNL---RKDMKVVELAGHVSGMTAYQHGDASLQQTIV 787

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +        + + 
Sbjct: 788  GLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRVFHAADDPLLTYN 847

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P +L+NG  GI  G +++IP +N  ++VD    ++D       
Sbjct: 848  ED-DGKKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDG------ 900

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                    P  P      G TG   A    R        S I K +GD+E + +TE+P +
Sbjct: 901  -------QPVKPMQPWFRGFTGEVTALGGDRFKF-----SGIIKETGDKE-VEITELPIR 947

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRG---ASADVILNQLYRY 330
                   +K+ E+++ EK    I D +D +       VI++      ++ +  L + ++ 
Sbjct: 948  TWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKFKL 1007

Query: 331  TSLQSLFSVNMVALNGYKPE-RFTLIG----ILKAFVAFREEVVVRRTKYLLNK 379
            +  +++ + N+VA +   PE R T       ILK F A R +   RR +Y LN+
Sbjct: 1008 S--KTIATTNLVAFD---PEGRITKYASVDDILKEFYAVRLKFYERRKQYQLNE 1056


>gi|8248335|gb|AAF74149.1|AF246730_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248343|gb|AAF74153.1|AF246734_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248349|gb|AAF74156.1|AF246737_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYNAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|112383336|gb|ABI17808.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 2   IMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAG 61

Query: 141 FLLDDLGKDTV 151
           +LL D+ K TV
Sbjct: 62  YLLADIEKKTV 72


>gi|60101258|gb|AAX13707.1| GyrA [Riemerella anatipestifer]
          Length = 57

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/54 (70%), Positives = 47/54 (87%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYTE
Sbjct: 2   GDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTE 55


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 674 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 730

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 731 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 790

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 791 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 836

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      +G G       S I K + D E + +T
Sbjct: 837 -----LKRLMVGEELVPMKPWFRGFKG----EVSGSGDRY--KFSGIIKQTADNE-VEIT 884

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 885 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329 -RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R +YLL++
Sbjct: 945 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 998


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 163/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K VK   ++G V G   + HG+ +++  + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDVKVVELAGYVSGMTAYQHGDNSLHTTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 862  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 921

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 922  ID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 967

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 968  -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P         +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 1016 ELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  -RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +   +  R+ T   IL+AF A R ++  +R +YLL++
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1129


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 164/354 (46%), Gaps = 43/354 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 862  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 921

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD          
Sbjct: 922  VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDN--------- 967

Query: 211  IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                 L  ++ G +  P      G  G      +G G       S I K + D E + +T
Sbjct: 968  -----LKRLMVGEELVPMKPWFRGFKG----EVSGSGDRY--KFSGIIKQTADNE-VEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  -RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++  ++ + + NMVA +   +  R+ T   IL+AF A R ++  +R +YLL++
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSE 1129


>gi|153873423|ref|ZP_02002012.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
 gi|152070113|gb|EDN67990.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
          Length = 203

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 56/248 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT +G V++  L +F +   +G IA+ LD  ++++SV+      D++L ++ G+ VRF 
Sbjct: 1   MATAYGTVKKTALINFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR + GVRGI L                                        
Sbjct: 61  EEKVRSM-GRTARGVRGIRL---------------------------------------- 79

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                + ND  +   I+ E           ILT +  GFGKRT   D+ +  R  KG+ A
Sbjct: 80  -----MPNDKVISLIITRE--------GGMILTATVNGFGKRTQIDDYPVKGRGIKGVIA 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V D++ I+L+S++GTL+R PVN I + SR T+GV +    KDE
Sbjct: 127 IKTSDRN--GKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVISRNTQGVHLIRLKKDE 184

Query: 890 RVVSVERI 897
           ++V ++R+
Sbjct: 185 QLVGLDRL 192


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 161/352 (45%), Gaps = 38/352 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG  ++   + 
Sbjct: 807  RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMKVVELAGHVSGTTAYQHGEGSLQQTIV 863

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + + 
Sbjct: 864  GLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFHNHDDPLLTYN 923

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG+  EP V     P +L+NG  GI  G +++IP +N  ++V+    ++D     L 
Sbjct: 924  ED-DGAKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVENLKRMMDGE--PLK 980

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG  F TG V           A G+      G   I K +GD+E + +TE+P +
Sbjct: 981  PMQPWFRG--F-TGEVT----------AVGQDRFKFSG---IIKETGDKE-VEITELPIR 1023

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +K+ ++++ EK    I D +D +       VI++        I   L     L
Sbjct: 1024 TWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKL 1083

Query: 334  -QSLFSVNMVALNGYKPE-RFTLIG----ILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +   PE R T       I+K F A R +   RR +Y LN+
Sbjct: 1084 SKTMTTTNLVAFD---PEGRITKYASVEDIMKEFYAVRLKYYERRKQYQLNE 1132


>gi|76664751|emb|CAJ17814.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 71

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EP+VL    PN+L+NG  GIAVGMAT IPTHNLGEV+DG ++ I N +I ++ LM+ I+
Sbjct: 2   KEPLVLPTALPNLLINGATGIAVGMATKIPTHNLGEVIDGIISYIHNKNISINQLMQHIK 61

Query: 222 GPDFPTG 228
           GPDFPTG
Sbjct: 62  GPDFPTG 68


>gi|237511973|gb|ACQ99699.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 48/69 (69%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE R
Sbjct: 2   ARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 61

Query: 135 LQKAAHFLL 143
           L   A  +L
Sbjct: 62  LTPLAMEML 70


>gi|237511971|gb|ACQ99698.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 49/69 (71%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   E MG YHPHG+A+IY+ L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE R
Sbjct: 2   ARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 61

Query: 135 LQKAAHFLL 143
           L   A  +L
Sbjct: 62  LTPLAMEML 70


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 180/418 (43%), Gaps = 64/418 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   +
Sbjct: 212 RSIPSLVDGLKPGQRKVLFTCFKRA---DKKEVKVAQLAGAVGEMSAYH-HGEASLMSTI 267

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQD+    ++ LLL  GQ       G   A+ RY   +L      L   + ++ + F
Sbjct: 268 VNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSIDENVLRF 327

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
               +    EP   C   P VLVNG  GI    +T +P +N  E+VD   A+ID  +   
Sbjct: 328 LYEENQKI-EPEWYCPVIPTVLVNGTEGIGTAWSTKVPCYNPREIVDNMRALIDGKE--- 383

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIVVT 269
                              G+      Y   RG+I      R + + E    + E I +T
Sbjct: 384 ---------------PKTFGKKNSIPWYKHFRGTIEQLDDQRFICNGEVAIINNETIEIT 428

Query: 270 EIP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRGASADV 322
           E+P     Q  K A+L  + +   +K+   I D ++       + V+++   K  AS + 
Sbjct: 429 ELPIRTWTQTYKEAVLVPMMD-GNDKQPAVITDFKEYHTDTTVKFVVKMSSDKLRASKEE 487

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY------- 375
            L+++++  S+ +  S+ +    GY      +  I K F   R++  + R  +       
Sbjct: 488 GLHKVFKLQSVINTTSMVLFDPFGYLRRFENVTDICKEFFEIRKKKYIERKSFQEGLLRA 547

Query: 376 ----LLNKARD-----RAHVLVGLAIAVANLDEVVRIIRFSPNP------ETARRELM 418
               L N+AR      +  +L+        ++++++ + F P+P      E  ++ELM
Sbjct: 548 QSERLSNQARFILAKIKGEILIENKRKATIVEQLIK-MSFKPDPVKKWKEERKKQELM 604


>gi|8248337|gb|AAF74150.1|AF246731_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 165/380 (43%), Gaps = 49/380 (12%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            G T +S  + +    + + + V L R+IP L DGLKP  R+IL+ ++ M        +K 
Sbjct: 692  GKTELSYKEFIDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNMD---ESTEMKV 747

Query: 75   ARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAE 128
            ++++G V  +  YH HG  ++   + RM Q +  S  L L++  G FG+    G+  A+ 
Sbjct: 748  SQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASA 806

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L      L      D  + R   +G   EP  LC   P +LVNG  GI  G +T
Sbjct: 807  RYIFTSLASTTRLLFPHADDDLYEKRIE-EGLVVEPRWLCPIIPLILVNGTEGIGTGWST 865

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             I   N  +V+DG    ID+                      + G   I+  Y   RG I
Sbjct: 866  KIVNRNAIDVIDGIRRKIDS----------------------VEGEHEIQPYYEDYRGKI 903

Query: 249  --------VIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                    +  G  H+   E+ +     I ++E+P ++  +   EK++++V    IV+ +
Sbjct: 904  EAVTSKKFITTGKIHLSRPERKNASTFSIEISELPIEIWTSKYKEKLSKIVENLPIVEFS 963

Query: 298  DLRDESDRQGYRVVIELKR-GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTL 354
            + R    R  +R+ ++ K+ G       ++L  +  L+S  + N V    NG   E  ++
Sbjct: 964  E-RHTEKRVNFRLTVDRKKAGRFLQKTNSELLNFFKLRSSITENRVLFDKNGLLKEYKSI 1022

Query: 355  IGILKAFVAFREEVVVRRTK 374
              I   F   R ++  +R K
Sbjct: 1023 SEIASEFFDVRRDLYEKRLK 1042


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 47/357 (13%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R+ILF   +  +      +K A+ SG V     YH HG  ++  A+
Sbjct: 646 RSIPSVVDGLKPSQRKILFAAFKRNLT---NEMKVAQFSGYVAEHSGYH-HGEQSLQGAI 701

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQD+    ++ LLL  GQ  FGS  + G   A+ RY   +L  A   + +      +
Sbjct: 702 VGMAQDYVGSNNMNLLLPNGQ--FGSRLLGGKDSASARYIFTKLSPATRQVFNQSDDVLL 759

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  + DGS  EP       P +LVNG  GI  G +T+IP++N  +++D    +I   ++
Sbjct: 760 KYLED-DGSSIEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEM 818

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                         P      G TG         G+   +GV+ +     + + +VV+E+
Sbjct: 819 -------------VPMTPWYKGFTG--TIVQNDNGTFTCKGVAKV-----NGKVVVVSEL 858

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P     +   + +  LV +K IVD  +   E +     V+ E+      D+ + +L +  
Sbjct: 859 PIGTWTSDYKDFLEGLVEKKVIVDFREKHTEKN-----VMFEIDYSGEPDISILKLEKV- 912

Query: 332 SLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               + + NM A +  G   +    + I++ +   R E   +R  YLL     +A +
Sbjct: 913 ----IRTTNMHAFDPQGKIKKYADPLDIIRDWFEVRREFYTKRKNYLLKDLSHKAAI 965


>gi|49425335|gb|AAT66028.1| gyrase subunit A [Corynebacterium amycolatum]
 gi|49425339|gb|AAT66030.1| gyrase subunit A [Corynebacterium glutamicum]
          Length = 70

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 136 QKAAHFLLDD 145
            K    LL D
Sbjct: 61  TKITLELLRD 70


>gi|70939063|ref|XP_740124.1| DNA GyrAse a-subunit [Plasmodium chabaudi chabaudi]
 gi|56517618|emb|CAH87702.1| DNA GyrAse a-subunit, putative [Plasmodium chabaudi chabaudi]
          Length = 516

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 153/319 (47%), Gaps = 58/319 (18%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           + TNIP+HNL +V++  ++ + N  I  D L  II+GPDF TG +I+ +   ++N Y TG
Sbjct: 1   ILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTG 60

Query: 245 RGSIVIR----------------------GVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           +GSI+IR                       + ++E  +   +++++  +P  V    ++E
Sbjct: 61  KGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIE 120

Query: 283 KIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSL 336
            I  ++ EK+      ++ +RDES++   R+V+EL++ +  + I N    L++YT ++  
Sbjct: 121 NIVTVLNEKKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTPMEIN 180

Query: 337 FSVNMVALNGYKPE--RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
           +  N V + GY+    +F+L   L+ +   R +  +++   + N    +   ++ L + +
Sbjct: 181 YHCNFVCI-GYENSYTQFSLKSFLQLWCENRIK-FIKKNYQIKNNNLQKDLNIIDLYLTI 238

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
               +++ II F           + ++ N   I++ +     S++ +  D        Q 
Sbjct: 239 Q--KKILDIISF-----------IHKNQNIEQIQNYL----KSNFKLNDD--------QI 273

Query: 455 RAILELRLARLTGLGRDDI 473
           + IL +++ +L  +   D 
Sbjct: 274 KYILSMKIQKLVNIKNIDF 292


>gi|8248353|gb|AAF74158.1|AF246739_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYYAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEMAGYLLQDI 72


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 48/351 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP L DG KP  R+I +G    G+E  K  VK A+++G V  +  YH HG A++  A+
Sbjct: 1059 RSIPSLVDGFKPSQRKIFYGANLRGLE--KDQVKVAQLAGFVSDRVAYH-HGEASLMGAI 1115

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+E +G FGS  + G   A+ RY   +L+K A  +        +++
Sbjct: 1116 IGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYIWTKLEKVAGLIFRKEDNPILNY 1175

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              N DG   EP       P +LVNG  GI  G +T+IP ++  E++              
Sbjct: 1176 -INDDGLMVEPEFYLPIIPMILVNGATGIGTGFSTSIPCYHPQELI-------------- 1220

Query: 214  DALMEIIRGPDF----PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            + L ++I+G  +    P      G+  +K    T   S  + G  HI+K    +  IVV 
Sbjct: 1221 EVLKKLIKGEKYKKIHPYYHKFEGK--LKKLDTT---SYQVSGTYHIDK----KNNIVVE 1271

Query: 270  EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            E+P   +  N    LEK+ +        D      +++    +++I LK   +    L++
Sbjct: 1272 ELPVGEWTTNYKQFLEKMLD-------TDTNFTNYDNNSTDEKILITLKF-KNIPTKLDE 1323

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +     +L +++     G+  +   +  I+  F   R E    R KYLL
Sbjct: 1324 KLKMNKKINLTNLHAYTEKGHIQKFKNIDEIINNFYYVRLEGYYNRKKYLL 1374


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 160/349 (45%), Gaps = 26/349 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA-RISGEVMGKYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++LFG  +  +  ++K V+ A  +S E    YH HG  ++   + 
Sbjct: 812  RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKVVELAGYVSKEAA--YH-HGEQSLQQTIV 868

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  ++F+
Sbjct: 869  GLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQ 928

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P VLVNG  GI  G +T+IP ++  ++V+     +       D
Sbjct: 929  FD-DGKLIEPKVYAPILPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGR-----D 982

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            +  +    P  P      G  G       G       G+  +E    +  ++ VTE+P +
Sbjct: 983  SSGDGEEKPFEPMTPWFRGWKGTPE--PDGPNKFKFNGI--VEVNPQNPNEVDVTELPIR 1038

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY-RYTS 332
            +       K+ E++R +K    I D ++ +D Q    +I L+    +  + + L  ++  
Sbjct: 1039 MWTDDFKSKLEEIIRGDKGPSWIKDYKEYNDHQTVHFIIALEEKQMSSALRDGLIEKFKL 1098

Query: 333  LQSLFSVNMVALNG----YKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +++ + N+VA +     YK E      I++ +  +R  +   R K+ L
Sbjct: 1099 TKTVATTNLVAFDTRGKIYKYE--NPQEIMEEYYHYRLNLYGERKKHWL 1145


>gi|49425331|gb|AAT66026.1| gyrase subunit A [Corynebacterium jeikeium]
          Length = 70

 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RIIGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 136 QKAAHFLLDD 145
            K    LL D
Sbjct: 61  TKITLELLRD 70


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 20/247 (8%)

Query: 29   YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYH 86
            + ++A N    R+IP + DGLKP  R+ILF   +  +      +K A++SG V     YH
Sbjct: 796  HYSWAAN---HRSIPSVMDGLKPGQRKILFACFKRNL---THEIKVAQLSGYVAEHTAYH 849

Query: 87   PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFL 142
             HG  ++   + +MAQD+  S  + LI   G FG+  + GD  A+ RY   +L +    +
Sbjct: 850  -HGEQSLSSTIVKMAQDFVGSNNIPLISQGGQFGTRLMGGDDSASPRYIFTKLNQITRLI 908

Query: 143  LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
             +DL +++++F    +G   +P       P +LVNG  GI VGM+ ++P ++  ++++  
Sbjct: 909  YNDLDEESLNFLEE-EGESIQPSYYIPIIPMILVNGSSGIGVGMSNSVPLYSPIDLIEYL 967

Query: 203  VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY--ATGRGSIVIRGVSHIEKTS 260
            +  + N    +  L+   RG  F    VI G++   +     TGR S+ IR +  I K +
Sbjct: 968  LLKLSNQR-QMKKLIPWYRG--FKGNIVISGKSFKTSGLIKITGRNSLSIREIP-IGKWT 1023

Query: 261  GDREQIV 267
             D +Q++
Sbjct: 1024 SDYKQVL 1030


>gi|254486417|ref|ZP_05099622.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043286|gb|EEB83924.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 152

 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            IS+ER  E+   E  +LT++EKG GK +SS+D+ +  R G G+ A D  K    G +VA
Sbjct: 26  TISQERYAEMSAAENLLLTITEKGSGKLSSSHDYPVRGRGGLGVTAMD--KAMRGGDIVA 83

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F T K E VVSV  I
Sbjct: 84  SFPVELDDQIMLATSKGQSIRVPVQGISFRSRSAGGVKVFDTGKGEVVVSVAWI 137


>gi|237511977|gb|ACQ99701.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 48/69 (69%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE R
Sbjct: 2   ARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 61

Query: 135 LQKAAHFLL 143
           L   A  +L
Sbjct: 62  LTPLAMEML 70


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 174/387 (44%), Gaps = 37/387 (9%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            +  ++ TD +    + +++  NV   R+IP + DGLKP  R++L+   +  +   KK +K
Sbjct: 713  VEKITYTDFINKELILFSMADNV---RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMK 766

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
               ++G V G   + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 767  VVELAGHVSGMTAYQHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASA 826

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 827  RYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGWSS 885

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    +++  +I              P      G TG   +    R   
Sbjct: 886  SIPNYNPEDVVDNLKRLMNGEEIK-------------PMQPWFRGFTGEVTSIGGDRFKF 932

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQG 307
                 S I K +G++E + +TE+P +       +K+ ++++ EK    I D +D +    
Sbjct: 933  -----SGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 986

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 987  VHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAV 1046

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLA 391
            R +   RR +Y LN+ +     L   A
Sbjct: 1047 RLKYYERRKQYQLNEMQKELEKLSNQA 1073


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 34/349 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L    +  +   KK +K   ++G V G   YH HG+ ++   +
Sbjct: 677  RSIPSVVDGLKPGQRKVLHTCFRRNL---KKDMKVVELAGHVSGMTAYH-HGDVSLQQTI 732

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  + +   +  + +
Sbjct: 733  VGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASARYIYTRLSPFARKIFNTADEPLLTY 792

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP V     P +L+NG  GI  G +++IP +N  +VV+           +L
Sbjct: 793  NED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEDVVN-----------NL 840

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              LM     P  P      G TG   A    R        S I +  GD+E + +TE+P 
Sbjct: 841  KRLM--AGQPTEPMQPWFRGFTGEVVAVGGDRYKF-----SGIIRECGDKE-VEITELPI 892

Query: 274  QVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYT 331
            +       +K+ E+++ +++   I D RD +       +I+L        +   L  ++ 
Sbjct: 893  RTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKFK 952

Query: 332  SLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              +S+ + N+VA +  G   +  T+  ILK F   R +   RR ++ LN
Sbjct: 953  LTKSIATTNLVAFDPEGRITKYATVDDILKEFYVVRLKYYERRKQFQLN 1001


>gi|157311570|ref|YP_001469613.1| DNA topisomerase II medium subunit [Enterobacteria phage Phi1]
 gi|149380774|gb|ABR24779.1| gp52 topoisomerase II medium subunit [Enterobacteria phage Phi1]
          Length = 448

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 136/309 (44%), Gaps = 37/309 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K
Sbjct: 3   KSVTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRK 62

Query: 74  CARI-SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
            A I SG     YH HG     +A + MA  WS    L++GQGNFGS       A RY  
Sbjct: 63  MADIGSGVAELGYH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIF 121

Query: 133 CRLQKAAHFLLDDLG-----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ +    +  D+      +D     P    +F  PVV     P VL NG  GIA G  
Sbjct: 122 ARVHENFFKIYKDMNCAPKHEDLEHIPP----AFYLPVV-----PMVLANGISGIATGYK 172

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+I  H+L  +++ C  +     +D +  ++    P F TG VI             R  
Sbjct: 173 TDILPHSLESLIE-CTELALAGKLDKEPSVQF---PKF-TGKVIP---------RDDRDG 218

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +++ G   +      +  + ++E+PY+ ++   +  + + + EK +  I    D   + G
Sbjct: 219 VILEGTYEL----NGKTTLTISEVPYKFDREEYV-AVLDALEEKDL--IVSYNDRCSKDG 271

Query: 308 YRVVIELKR 316
           +R  + LKR
Sbjct: 272 FRFEVTLKR 280


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 1101

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 161/356 (45%), Gaps = 58/356 (16%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP L DG KP  R+I +G    G+E  K  VK A+++G V  +  YH HG A++  A+
Sbjct: 672 RSIPSLVDGFKPSQRKIFYGANLRGLE--KDQVKVAQLAGFVSDRVAYH-HGEASLMGAI 728

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++  S  + L+E +G FGS  + G   A+ RY   +L+K A  +        +++
Sbjct: 729 IGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYIWTKLEKVAGLIFRKEDNPILNY 788

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             N DG   EP       P +LVNG  GI  G +T+IP ++  E++              
Sbjct: 789 -INDDGLMVEPEFYLPIIPMILVNGATGIGTGFSTSIPCYHPQELI-------------- 833

Query: 214 DALMEIIRGPDF----PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           + L ++I+G  +    P      G+  +K    T   S  + G  HI+K    +  IVV 
Sbjct: 834 EVLKKLIKGEKYKKIHPYYHKFEGK--LKKLDTT---SYQVSGTYHIDK----KNNIVVE 884

Query: 270 EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           E+P   +  N    LEK+ +        D      +++    +++I LK   +    L++
Sbjct: 885 ELPVGEWTTNYKQFLEKMLD-------TDTNFTNYDNNSTDEKILITLKF-KNIPTKLDE 936

Query: 327 LYRYTSLQSLFSVNMVALNGYKP----ERFTLIG-ILKAFVAFREEVVVRRTKYLL 377
                 L+    +N+  L+ Y      ++F  I  I+  F   R E    R KYLL
Sbjct: 937 -----KLKMNKKINLTNLHAYTEKGHIQKFKNIDEIINNFYYVRLEGYYNRKKYLL 987


>gi|284027754|gb|ADB66702.1| ParC [Salmonella enterica subsp. enterica]
          Length = 100

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/91 (49%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RR+++ M ++G+    K+ + AR  G+V+GKYHPHG++A Y+A+  +AQ +S 
Sbjct: 8   DGLKPVQRRMVYAMSELGLTATFKFKRSARTVGDVLGKYHPHGDSAWYEAMVLLAQPFSY 67

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
           R  L++GQG +G++D DP   AA RYTE RL
Sbjct: 68  RGPLVDGQGFWGALD-DPKSFAAMRYTEYRL 97


>gi|284027749|gb|ADB66700.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 90

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/88 (47%), Positives = 59/88 (67%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L  M  +G +WN+ Y K A + G V+GK+HPH + A Y    RMAQ  SLR +L+EGQG
Sbjct: 2   VLCAMNVLGKDWNEAYKKSALVVGNVIGKFHPHADFAGYYTNVRMAQPSSLRYMLVEGQG 61

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLL 143
            +G++DGD  AA R++E RL + AH L+
Sbjct: 62  TYGTIDGDSAAAMRFSEIRLARIAHGLM 89


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella
           virus FR483]
          Length = 1058

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 163/359 (45%), Gaps = 51/359 (14%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R+ILF   +  +    + +K A+ SG V  +  YH HG  ++  A+
Sbjct: 646 RSIPSVVDGLKPSQRKILFAAFKRNLV---QEIKVAQFSGYVSEISGYH-HGEQSLQGAI 701

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQD+    ++ LLL  GQ  FGS  + G   A+ RY   +L      + +      +
Sbjct: 702 VGMAQDYVGSNNMNLLLPNGQ--FGSRLLGGKDSASARYIFTKLSPVTRQVFNQADDVLL 759

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  + DGS  EP       P +LVNG  GI  G +T+IP++N  +++D    +I   ++
Sbjct: 760 KYLED-DGSSIEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIIDNVKRLISGKEM 818

Query: 212 DLDALMEIIRGPDFP--TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                  +   P +   TG+++              G+   +GV+   K SG  + +VV+
Sbjct: 819 -------VPMSPWYKEFTGSIV----------QNDNGTFTCKGVA---KVSG--KNVVVS 856

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+P     +   + +  LV +K IVD  +   E +     V+ E+      D+ + +L +
Sbjct: 857 ELPIGTWTSDYKDFLEGLVEKKVIVDFREKHTEKN-----VLFEIDYSGEPDISILKLEK 911

Query: 330 YTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
                 + + NM A +  G   +    + I++ +   R+    +R  YL+     +A +
Sbjct: 912 V-----IRTTNMHAFDPQGKIKKYACSLDIIRDWFEVRKTFYTKRKAYLIKDLSHKAAI 965


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 161/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 728

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 729 GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQSDEPLLVNN 788

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 789 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 834

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + +T
Sbjct: 835 -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIT 882

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
           E+P +       +K+ E+++  ++   I D +D +       +I+++       +   L 
Sbjct: 883 ELPIRTWTQDFKDKLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 942

Query: 328 YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R ++LL++
Sbjct: 943 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSE 996


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 15/181 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP + DG KP  R++LFG  +  +   K   K A+++G +     YH HG  ++   +
Sbjct: 681 RSIPSVIDGFKPGQRKVLFGCFKRNL---KNECKVAQLTGYIAEHSAYH-HGENSLQQTI 736

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQD+    ++ LLL  GQ  FGS    G   AA RY   +L     ++        +
Sbjct: 737 VNMAQDFVGSNNINLLLPCGQ--FGSRKEGGKDAAAARYIFTKLSPLTRYIFLQEDDPIL 794

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ N DG   EP       P VLVNG  GI  G +T IP++N  +V+D  V  +DN D+
Sbjct: 795 DYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTGFSTYIPSYNPIDVIDNIVNFLDNKDM 853

Query: 212 D 212
           +
Sbjct: 854 N 854


>gi|315613998|gb|ADU52599.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614000|gb|ADU52600.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614002|gb|ADU52601.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614004|gb|ADU52602.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 68

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 53/65 (81%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 3   YKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRY 62

Query: 131 TECRL 135
           TE R+
Sbjct: 63  TEIRM 67


>gi|38640269|ref|NP_944225.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
 gi|33414954|gb|AAQ17997.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
          Length = 438

 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 134/303 (44%), Gaps = 55/303 (18%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++GI+S+     + N    +A+  I  RA+P + DGLKPV R ILF +++      +++ 
Sbjct: 5   KRGISSL-----VNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLKNA---GREFK 56

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A ++G +    + HG  A  DA   MA  W+    +I+G+GNFG       AA RY  
Sbjct: 57  KNAAVAGVISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIF 116

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           C    + H   + + KD      +  DGS   P       P VL+NG  GIA G AT I 
Sbjct: 117 C----SKHERFESMFKDMELLEESTADGSIL-PRYYLPILPTVLLNGVSGIATGFATKIM 171

Query: 192 THNLGEVVDGCVAVI------DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            H++  V   CV  +      D P+I           P F       G+           
Sbjct: 172 PHSVQSVAK-CVEQVLKSGKCDEPEIQF---------PKF------FGKI---------- 205

Query: 246 GSIVIRGVSHIEKTSGDRE-----QIVVTEIPYQVNKAAMLEKIAELVREKRIV--DIAD 298
             + I G +   K  GD E     ++++ E+P + ++   +  + +LV   +IV  D + 
Sbjct: 206 --LSIEGETQSWKVEGDYELSGKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGYDESK 263

Query: 299 LRD 301
           ++D
Sbjct: 264 MKD 266


>gi|312192213|gb|ADQ43803.1| DNA gyrase subunit A [Aerococcus urinae]
          Length = 64

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+GM ++GV  +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G G
Sbjct: 1   ILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHG 60

Query: 116 NFGS 119
           NFGS
Sbjct: 61  NFGS 64


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 15/181 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP + DG KP  R++LFG  +  +   K   K A+++G +     YH HG  ++   +
Sbjct: 681 RSIPSVIDGFKPGQRKVLFGCFKRNL---KNECKVAQLTGYIAEHSAYH-HGENSLQQTI 736

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQD+    ++ LLL  GQ  FGS    G   AA RY   +L     ++        +
Sbjct: 737 INMAQDYVGSNNINLLLPCGQ--FGSRKEGGKDAAAARYIFTKLSPLTRYIFLQEDDPIL 794

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ N DG   EP       P VLVNG  GI  G +T IP++N  +++D  V  +DN D+
Sbjct: 795 DYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTGFSTFIPSYNPIDIIDNIVNFLDNKDM 853

Query: 212 D 212
           +
Sbjct: 854 N 854


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 162/361 (44%), Gaps = 32/361 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG+ ++   + 
Sbjct: 809  RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMKVVELAGHVSGMTAYQHGDISLQQTIV 865

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 866  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRIFHASDEPLLTYN 925

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P +L+NG  GI  G +++IP +N  +VVD    +++  +I   
Sbjct: 926  VD-DGKTIEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNGEEIK-- 982

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                       P      G TG   +    R        S I K +G++E + +TE+P +
Sbjct: 983  -----------PMQPWFRGFTGEVTSIGGDRFKF-----SGIIKETGEKE-VEITELPIR 1025

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +K+ ++++ EK    I D +D +       VI++        +   L  ++  
Sbjct: 1026 TWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKL 1085

Query: 333  LQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
             +++ + N+VA +  G   +  T+  ILK F A R +   RR +Y LN+ +     L   
Sbjct: 1086 TKTIATTNLVAFDPEGRITKYATVDDILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQ 1145

Query: 391  A 391
            A
Sbjct: 1146 A 1146


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 162/361 (44%), Gaps = 32/361 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG+ ++   + 
Sbjct: 814  RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMKVVELAGHVSGMTAYQHGDISLQQTIV 870

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 871  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRIFHASDEPLLTYN 930

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P +L+NG  GI  G +++IP +N  +VVD    +++  +I   
Sbjct: 931  VD-DGKTIEPEVYMPVVPMILINGADGIGTGWSSSIPNYNPEDVVDNLKRLMNGEEIK-- 987

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                       P      G TG   +    R        S I K +G++E + +TE+P +
Sbjct: 988  -----------PMQPWFRGFTGEVTSIGGDRFKF-----SGIIKETGEKE-VEITELPIR 1030

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +K+ ++++ EK    I D +D +       VI++        +   L  ++  
Sbjct: 1031 TWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKFKL 1090

Query: 333  LQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
             +++ + N+VA +  G   +  T+  ILK F A R +   RR +Y LN+ +     L   
Sbjct: 1091 TKTIATTNLVAFDPEGRITKYATVDDILKEFFAVRLKYYERRKQYQLNEMQKELEKLSNQ 1150

Query: 391  A 391
            A
Sbjct: 1151 A 1151


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 162/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 728

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 729 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 788

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 789 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 834

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K + D E + ++
Sbjct: 835 -----LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTADNE-VEIS 882

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
           E+P +       +K+ E+++ +++   I D +D +       +I+++       +   L 
Sbjct: 883 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 942

Query: 328 YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF A R ++  +R ++LL++
Sbjct: 943 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSE 996


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 1061

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 168/377 (44%), Gaps = 51/377 (13%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
           L R+IP + DG KP  R++++   +  +  +   VK A+ SG V     YH HG A++  
Sbjct: 649 LERSIPSVVDGFKPSQRKVIYSAFKRNLTTD---VKVAQFSGYVAEHSAYH-HGEASLQG 704

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
            +  +AQD+    ++  LL EGQ  FGS    G   A+ RY   +L      +  D   +
Sbjct: 705 TIVNLAQDYVGSNNINWLLPEGQ--FGSRLQGGKDHASARYIYMKLNPQTRQVFVDTDDN 762

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
            + +  + DG   EP       P++LVNG  GI  G +TNIP++N  ++VD    +I   
Sbjct: 763 LLKYMYD-DGDKIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLISGE 821

Query: 210 D-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           D +++    +  +G                    T  G  V +G+        + + IVV
Sbjct: 822 DLVEMKPWYKGFKG----------------KIMETSPGVYVTKGLYM-----PNGKTIVV 860

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           +E+P         E +  L+ +K I D  +   ++D     V+ E+    + ++ + +L 
Sbjct: 861 SELPIGKWTQDYKEHLDGLLEKKIISDFREKHSDTD-----VLFEIDFVGNPNIDILKLE 915

Query: 329 RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
                 ++ S NM A +  G   +  T + I++ +   R+++ V+R  YLL     R ++
Sbjct: 916 -----TTIRSTNMHAFDPSGKIKKYDTPLDIIREWFGVRKDLYVKRKAYLLEDLTHRTNI 970

Query: 387 LVGLA--IAVANLDEVV 401
                  I + N DE++
Sbjct: 971 AQNKHRFITMVNNDEII 987


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 158/362 (43%), Gaps = 38/362 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   +
Sbjct: 696  RSIPSLVDGLKPGQRKVMFTCFKRN---DKREVKVAQLSGSVAEMSAYH-HGEVSLQMTI 751

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    +D+
Sbjct: 752  VNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLDY 811

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG   EP+      P VLVNG  GI  G +T I  HN  E++     +I++ D   
Sbjct: 812  QTD-DGQRIEPLWYLPIIPMVLVNGAEGIGTGWSTKIANHNPREIIRNLRRMINSEDP-- 868

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      GR      Y +  G  V  G  +I+   GDR  I +TE+P 
Sbjct: 869  --------LPMHPWYKNFRGRI----EYVSD-GRYVHTG--NIQMLPGDR--IEITELPL 911

Query: 274  QVNKAAMLEKIAELVR---EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ--LY 328
             V      E + E++    +K    +++ R+       R V+    G    +   +   Y
Sbjct: 912  GVWTQTYKENVLEVLSNGTDKVKAVVSEYREYHTDTTVRFVVSFAPGEFNRLRSEEGGFY 971

Query: 329  RYTSLQSLFSVN-MVALNGYKP-ERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            R   L S  S N M A +      RF + I ILK F   R E   RR  YL+ +   +A 
Sbjct: 972  RVFKLTSSLSTNQMHAFDQSNCLRRFPSSIDILKEFYTLRVEYYCRRKDYLVGQLTAQAD 1031

Query: 386  VL 387
             L
Sbjct: 1032 RL 1033


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 42/354 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   ++ V   KK +K A +SG V+G   + HG+A++   + 
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNV---KKDMKVAELSGYVLGLTAYQHGDASLQQTII 863

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + + 
Sbjct: 864  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLLTYN 923

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP       P +L+NG  GI  G +T+IP +N  E+V            ++ 
Sbjct: 924  VD-DGQVIEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIV-----------ANIK 971

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM  +  P  P      G TG   +    R     R  S I    GD E I +TE+P +
Sbjct: 972  RLM--VGEPVVPMQPWFRGFTGEVVSMGGERYKFSGR-FSQI----GDNE-IEITELPIR 1023

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +++ E+++ ++I   I D +D +       VI+L    +   I   L     L
Sbjct: 1024 SWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKLKL 1083

Query: 334  -QSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++L + N+VA +          PE      IL+ F + R ++  +R ++ L++
Sbjct: 1084 TKTLATSNLVAFDSEGRITKYESPEH-----ILQEFYSVRIKLYEKRKQHQLSQ 1132


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 99/203 (48%), Gaps = 16/203 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K    VS  D   N  L   +N    R+IP L DGLKP  R++LF   +     +KK V
Sbjct: 712 DKNTYVVSFKD-FVNKELVLFLNCDNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEV 767

Query: 73  KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
           K A+++G V  M  YH HG A++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 768 KVAQLAGAVGEMSAYH-HGEASLMSTIVNLAQDFVGSNNINLLLPIGQ--FGTRLQGGKD 824

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            A+ RY   +L      L   + ++ + F    +    EP   C   P VLVNG  GI  
Sbjct: 825 SASPRYIFTQLNPVTKALFPSIDENVLRFLFEENQKI-EPEWYCPVIPTVLVNGAEGIGT 883

Query: 185 GMATNIPTHNLGEVVDGCVAVID 207
             +T +P +N  E+VD   A+ID
Sbjct: 884 AWSTKVPCYNPREIVDNMRALID 906


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 42/354 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   ++ V   KK +K A +SG V+G   + HG+A++   + 
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNV---KKDMKVAELSGYVLGLTAYQHGDASLQQTII 863

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + + 
Sbjct: 864  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLLTYN 923

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP       P +L+NG  GI  G +T+IP +N  E+V            ++ 
Sbjct: 924  VD-DGQVIEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIV-----------ANIK 971

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM  +  P  P      G TG   +    R     R  S I    GD E I +TE+P +
Sbjct: 972  RLM--VGEPVVPMQPWFRGFTGEVVSMGGERYKFSGR-FSQI----GDNE-IEITELPIR 1023

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +++ E+++ ++I   I D +D +       VI+L    +   I   L     L
Sbjct: 1024 SWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKLKL 1083

Query: 334  -QSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++L + N+VA +          PE      IL+ F + R ++  +R ++ L++
Sbjct: 1084 TKTLATSNLVAFDSEGRITKYESPEH-----ILQEFYSVRIKLYEKRKQHQLSQ 1132


>gi|33620672|ref|NP_891840.1| topoisomerase medium subunit [Enterobacteria phage RB49]
 gi|33438555|gb|AAL15130.2| topoisomerase medium subunit [Enterobacteria phage RB49]
          Length = 454

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 144/339 (42%), Gaps = 39/339 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K A
Sbjct: 11  FTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMA 70

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I   V    + HG     +A + MA  WS    L++GQGNFGS       A RY   R+
Sbjct: 71  DIGSGVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARV 130

Query: 136 QKAAHFLLDDLG-----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            +    +  D+      +D     P    +F  PVV     P VL NG  GIA G  T+I
Sbjct: 131 HENFFKIYKDMNCAPKHEDLEHIPP----AFYLPVV-----PMVLANGISGIATGYKTDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             H+L  +++ C  +     +D +  ++    P F TG VI             R  +++
Sbjct: 182 LPHSLESLIE-CTELALAGKLDKEPSVQF---PKF-TGKVIP---------RDDRDGVIL 227

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            G   +      + ++ ++E+PY+ ++   +  + + + EK +  I    D   + G+R 
Sbjct: 228 EGTYEL----NGKTKLTISEVPYKFDREEYV-AVLDALEEKDL--IVSYNDRCSKDGFRF 280

Query: 311 VIELKR----GASADVILNQLYRYTSLQSLFSVNMVALN 345
            + LKR             Q+ +   L  L + N+V +N
Sbjct: 281 EVTLKRDYFKSEDESARHEQIMKDFKLTQLVAQNIVVVN 319


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 146/313 (46%), Gaps = 20/313 (6%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA-RISGEVMGKYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++LFG  +  +  ++K V+ A  +S E    YH HG  ++   + 
Sbjct: 799  RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKVVELAGYVSKEAA--YH-HGEQSLQQTII 855

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  ++F+
Sbjct: 856  GLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQ 915

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP V     P VLVNG  GI  G +T+IP ++  ++V+     +       D
Sbjct: 916  FD-DGKLIEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGR-----D 969

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            +  +    P  P      G  G        R      G+  +E    +  ++ VTE+P +
Sbjct: 970  SSGDGEEKPFEPMTPWFRGWKGTPEPDGPNR--FKFNGI--VEVNPQNPNEVDVTELPIR 1025

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY-RYTS 332
            +       K+ E++R +K    I D ++ +D Q    +I L+    +  + + L  ++  
Sbjct: 1026 MWTDDFKSKLEEIIRGDKSPSWIKDYKEYNDHQTVHFIIALEEKHMSSALRDGLIEKFKL 1085

Query: 333  LQSLFSVNMVALN 345
             +++ + N+VA +
Sbjct: 1086 TKTVATTNLVAFD 1098


>gi|238695150|ref|YP_002922344.1| topoisomerase medium subunit [Enterobacteria phage JSE]
 gi|220029286|gb|ACL78221.1| topoisomerase medium subunit [Enterobacteria phage JSE]
          Length = 454

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 146/340 (42%), Gaps = 41/340 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K A
Sbjct: 11  FTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMA 70

Query: 76  RI-SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
            I SG     YH HG     +A + MA  WS    L++GQGNFGS       A RY   R
Sbjct: 71  DIGSGVAELGYH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFAR 129

Query: 135 LQKAAHFLLDDLG-----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           + +    +  D+      +D     P    +F  PVV     P VL NG  GIA G  T+
Sbjct: 130 VHENFFKIYKDMNCAPKHEDLEHIPP----AFYLPVV-----PMVLANGISGIATGYKTD 180

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  H+L  +++ C  +     +D +  ++    P F TG VI             R  ++
Sbjct: 181 ILPHSLESLIE-CTELALAGKLDKEPSVQF---PKF-TGKVIP---------RDDRDGVI 226

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + G   +      + ++ ++E+PY+ ++   +  + + + EK +  I    D   + G+R
Sbjct: 227 LEGTYEL----NGKTKLTISEVPYKFDREEYV-AVLDALEEKDL--IVSYNDRCSKDGFR 279

Query: 310 VVIELKR----GASADVILNQLYRYTSLQSLFSVNMVALN 345
             + LKR             Q+ +   L  L + N+V +N
Sbjct: 280 FEVTLKRDYFKSEDESARHEQIMKDFKLTQLVAQNIVVVN 319


>gi|166156947|gb|ABY83102.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156949|gb|ABY83103.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score = 92.8 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQG 60

Query: 116 NFGSVDGDPPAAERY 130
           NFGS+DGD  AA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 42/354 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   ++ V   KK +K A +SG V+G   + HG+A++   + 
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNV---KKDMKVAELSGYVLGLTAYQHGDASLQQTII 863

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + + 
Sbjct: 864  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLLTYN 923

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP       P +L+NG  GI  G +T+IP +N  E+V            ++ 
Sbjct: 924  VD-DGQVIEPETYFPVVPMILINGADGIGTGWSTSIPNYNPEEIV-----------ANIK 971

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM  +  P  P      G TG   +    R     R  S I    GD E I +TE+P +
Sbjct: 972  RLM--VGEPVVPMQPWFRGFTGEVVSMGGERYKFSGR-FSQI----GDNE-IEITELPIR 1023

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +++ E+++ ++I   I D +D +       VI+L    +   I   L     L
Sbjct: 1024 SWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVIQLDEKHAKKTIAEGLEEKLKL 1083

Query: 334  -QSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++L + N+VA +          PE      IL+ F + R ++  +R ++ L++
Sbjct: 1084 TKTLATSNLVAFDSEGRITKYESPEH-----ILQEFYSVRIKLYEKRKQHQLSQ 1132


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 170/353 (48%), Gaps = 33/353 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R++++  ++  +  ++K  + A  S   +  YH HG+A+++  +  
Sbjct: 832  RSIPSVVDGLKPGQRKVIYTCLKKNIVKDQKVFELAG-SVSKLAAYH-HGDASLHQTIVG 889

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  + + L +  ++   
Sbjct: 890  LAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIFTRLSPFARRVFNPLDEPVLENNI 949

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD------GCVAVIDNP 209
            + +GS  EP       P VL+NG  GI  G +T+IP +N  +VV+      G +A  +N 
Sbjct: 950  D-EGSVIEPKNYAPIVPMVLINGADGIGTGWSTSIPNYNPVDVVNNLKRRMGRLAGHENE 1008

Query: 210  DIDLDALMEIIRG-PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            ++  ++++   RG    P    + GR                 G+  I +   +  +IVV
Sbjct: 1009 ELPFESMIPWFRGWKGTPEPDSVPGR-------------YRFNGI--IYQDDRNPNEIVV 1053

Query: 269  TEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQ 326
            +E+P ++       K+ E++R EK    I D ++ +D +    VI+++ +   A V    
Sbjct: 1054 SELPVRMWTDDFKAKLEEVIRAEKSPSWIKDYKEFNDHRNVHFVIQMEDKHVQAAVDEGL 1113

Query: 327  LYRYTSLQSLFSVNMVA--LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            + R+   +++ + N+VA  +NG       +  IL+ F  +R  +   R K+ L
Sbjct: 1114 IDRFKLSKTVGTTNLVAFDINGQIRRYEKVEDILEEFFNYRLNMYGLRKKHWL 1166


>gi|304368196|gb|ADM26747.1| ParC [Acinetobacter baumannii]
          Length = 98

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDYACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
            D DP   AA RYTE +L   +  LL +LG+ T +++ N
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDN 98


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 160/357 (44%), Gaps = 36/357 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+ILF   +  +   KK +K A+++G V     YH HG  ++   +
Sbjct: 714  RSIPSIVDGLKPGQRKILFSCFKRNL---KKEIKVAQLAGYVSEQSAYH-HGEDSLNGTV 769

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+    G   A+ RY   +L +   ++        +++
Sbjct: 770  VNMAQNFVGSNNINLLYPGGMFGTRLQGGKDSASPRYIFTKLSEITRYIFPKADDPVLEY 829

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VLVNG  GI    +TNI T+N  ++V+G           L
Sbjct: 830  LDD-DGQSIEPRFYVPILPMVLVNGSEGIGTAWSTNIETYNPVDIVEG-----------L 877

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             AL++     +F       G  GI    A  +     +GV  IEK   D   + ++E+P 
Sbjct: 878  KALIKGEEAKEF--HPWYKGFDGIIERLAPTKWQT--KGV--IEKI--DDNTLDISELPI 929

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            ++   +  E++ +++  +++    D R+          +++      D     LY Y  L
Sbjct: 930  RIWTESFKERLEKMMEAQQV---DDFRENHTDVTVSFTVKMTDKQMKDAEDAGLYDYFKL 986

Query: 334  QSLFSV-NMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
               FS  NMV  +  G   E  T++ ILK F   R +   +R +Y+L K +    +L
Sbjct: 987  FKKFSTSNMVLFSEEGGIKEYETVLDILKEFYPIRLKFYGKRKEYMLEKMKKELEIL 1043


>gi|551907|gb|AAA91334.1| topoisomerase II subunit A [Mycoplasma gallisepticum]
          Length = 86

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          ++K I    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2  DKKKIFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72 VKCARISGEVMGKYHPHGNAAIYDA 96
           K A   GEV+GK+HPHG+++IY+A
Sbjct: 62 RKSAATVGEVIGKFHPHGDSSIYEA 86


>gi|166156951|gb|ABY83104.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156953|gb|ABY83105.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156955|gb|ABY83106.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156957|gb|ABY83107.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156959|gb|ABY83108.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156961|gb|ABY83109.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156963|gb|ABY83110.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156965|gb|ABY83111.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQG 60

Query: 116 NFGSVDGDPPAAERY 130
           NFGS+DGD  AA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|325515305|gb|ADZ24286.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668268|gb|ADZ44578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|226327144|ref|ZP_03802662.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
 gi|225204362|gb|EEG86716.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
          Length = 270

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 34/235 (14%)

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--IL 324
           ++T +P+QV+ A +LE+IA L+R K++  + DLRDESD +    ++ + R    D+  ++
Sbjct: 1   MITALPHQVSGAKVLEQIAALMRAKKLPLVEDLRDESDHENPTRLVIVPRSNRVDLEQVM 60

Query: 325 NQLYRYTSLQSLFSVN--MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             L+  T L+  + VN  M+ L+  +P    L+ IL  ++ +R + V  R  + L K   
Sbjct: 61  YYLFVNTDLEKSYRVNLNMIGLDN-RPAVKGLLTILNEWLVYRRQTVTNRLNHRLEKVLR 119

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R  +L GL IA  N+DEV+ IIR    P+    ELM+R                      
Sbjct: 120 RLEILKGLLIAYLNIDEVIEIIRHEDEPKA---ELMRR---------------------- 154

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                 LS++Q  AILELRL  L  L    ++ E + L  E      +LSS  RL
Sbjct: 155 ----FELSDIQAEAILELRLRHLAKLEEIKLKAESDELEKERDSIEKLLSSPRRL 205


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 161/383 (42%), Gaps = 50/383 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +K   +VS +D +    + ++ N+   R+IP + DGLKP  R++LF  ++     +KK +
Sbjct: 691  QKNTIAVSYSDFINKELVLFS-NLDNERSIPSMVDGLKPGQRKVLFTCLKRN---DKKEI 746

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
            K A+++G V     YH HG A++   +  +AQ++    +L LLL  GQ  FG+    G  
Sbjct: 747  KVAQLAGSVAEHSAYH-HGEASLMGTIINLAQNYVGSNNLNLLLPIGQ--FGTRLQGGKD 803

Query: 125  PAAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             A+ RY    L      +     D L K   D     +  +  P++     P VLVNG  
Sbjct: 804  AASPRYIFTLLNPLTRLIFHVHDDPLLKYNKDDNQKIEPEWYIPII-----PMVLVNGAD 858

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G  T IP HN  E+V     ++D  +               P      G  G   +
Sbjct: 859  GIGTGWMTKIPNHNPREIVQNIKRMLDGDE-------------PLPMKPWYKGFKGDIES 905

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY----QVNKAAMLEKIAELVREKRIVDI 296
            Y   R  +V   +S I        Q+ +TE+P     Q  K  +LE +   V  K    I
Sbjct: 906  YGDSR-YLVSGEISIISNN-----QLEITELPVGTWTQAYKENVLEPLLHGVENKVPPLI 959

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFT 353
             D ++ +     R VI+++           L++   LQS  S+N +     NG       
Sbjct: 960  QDYKEYNTDTTVRFVIQMEPSKLQKFEEEGLHKVFKLQSTISINSMCTFDSNGVLKRSED 1019

Query: 354  LIGILKAFVAFREEVVVRRTKYL 376
            +  ILK F   R    V+R  YL
Sbjct: 1020 VTVILKEFYDLRMLFYVKRKSYL 1042


>gi|2501244|sp|Q49166|GYRA_MYCFV RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mfl
           gyrA intein
 gi|1122290|emb|CAA92433.1| DNA gyrase subunit A [Mycobacterium flavescens]
          Length = 554

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA
Sbjct: 7   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 66

Query: 128 ERY 130
            RY
Sbjct: 67  MRY 69



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 491 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 550

Query: 191 PTHN 194
           P HN
Sbjct: 551 PPHN 554


>gi|312262749|gb|ADQ53044.1| gp52 topoisomerase II medium subunit [Aeromonas phage PX29]
          Length = 438

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 125/297 (42%), Gaps = 42/297 (14%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           +A+  I  RA+P + DGLKP  R IL+ +++      +++ K A I+G +    + HG  
Sbjct: 19  FAMYTIEERALPSVVDGLKPAQRYILYSVLKNA---GREFKKNAAIAGVISEYGYNHGET 75

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A  DA   MA  W+    +I+G+GNFGS      AA RY  C      H   D + KD  
Sbjct: 76  AAMDAACLMASTWNNNFPVIQGRGNFGSRAVQEGAAARYIFC----TKHSNFDSMFKDMD 131

Query: 152 DFRPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
               +  DGS   P       P VL+NG  GIA G +T I  HN+  V      V+    
Sbjct: 132 LLEESLADGSIL-PRYYLPILPTVLLNGVSGIATGFSTKILPHNVQSVAKCVEQVLKTGK 190

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE-----Q 265
            D   L        FP      G+             I I G S      G+ E     +
Sbjct: 191 CDEPELQ-------FPK---FFGKI------------IPIEGKSQSWTLEGEYELSGKTK 228

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG--YRVVIELKRGASA 320
           + +TE+P + ++   +  + +LV   +IV      DES   G  +   I LKR   A
Sbjct: 229 LTITELPPKYDRVKYVTLLNKLVDADKIVSY----DESKFDGREFCFKITLKREFDA 281


>gi|312207855|pdb|3KU8|A Chain A, Ccdbvfi:gyra14ec
 gi|312207856|pdb|3KU8|B Chain B, Ccdbvfi:gyra14ec
          Length = 156

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 8/140 (5%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   + RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W  
Sbjct: 17  RGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQL 76

Query: 425 SDIKDLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            ++  +++   D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E
Sbjct: 77  GNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 136

Query: 477 LNSLGIEIKECLDILSSRSR 496
              L  +I E L IL S  R
Sbjct: 137 YKELLDQIAELLRILGSADR 156


>gi|308235539|ref|ZP_07666276.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 245

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 121/261 (46%), Gaps = 61/261 (23%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-------DSRDEILSVETCTQENDILLT 699
           Y+V AT+ G V++  L ++    + G IA++L       +  DE++    C  E+DI+L 
Sbjct: 15  YLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILV 74

Query: 700 TKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           +KLG  ++F     ++   GR + GV+G+   + D+++ M +V                 
Sbjct: 75  SKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREDDELLDMDVV----------------- 117

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                SVE +             + +L V+ +GF KRT+  ++R
Sbjct: 118 ---------------------SVETS-------------KDLLVVTNEGFAKRTAIEEYR 143

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +  R+G G++A  +++    G+LV    V + DQ++ +   G +IR  VNE++   R T+
Sbjct: 144 LQGRNGYGVKAVQLAEGR--GSLVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQ 201

Query: 879 GVVIFSTAKDERVVSVERIRE 899
           GV +    K + ++S+ R  E
Sbjct: 202 GVTLAKPDKGDEIISIARNEE 222


>gi|2501245|sp|Q49467|GYRA_MYCGO RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mgo
           gyrA intein
 gi|1122292|emb|CAA92432.1| DNA gyrase subunit A [Mycobacterium gordonae]
          Length = 550

 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA
Sbjct: 4   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 63

Query: 128 ERY 130
            RY
Sbjct: 64  MRY 66



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 487 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 546

Query: 191 PTHN 194
           P HN
Sbjct: 547 PPHN 550


>gi|284027757|gb|ADB66703.1| ParC [Salmonella enterica subsp. enterica]
          Length = 86

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 60/84 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 2   YSMYVIIDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQG 115
           A Y+A+  MA  +S R  L++G G
Sbjct: 62  AYYEAMVLMALPFSYRNPLVDGHG 85


>gi|11558104|emb|CAC17731.1| GyrA protein [Mycobacterium gastri]
          Length = 550

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 46/63 (73%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA
Sbjct: 1   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 60

Query: 128 ERY 130
            RY
Sbjct: 61  MRY 63



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 484 TEARLTPLAMEIVREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 543

Query: 191 PTHNLGE 197
           P HN GE
Sbjct: 544 PPHNKGE 550


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 37/351 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG  ++   + 
Sbjct: 741  RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMKVVELAGHVSGTTAYQHGEGSLQQTIV 797

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + + 
Sbjct: 798  GLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYIYTRLWPFARRVFHNHDDPLLTYN 857

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG+  E  V     P +L+NG  GI  G +++ P +N  ++V+    ++D     L 
Sbjct: 858  ED-DGAKIEQEVYVPVVPMILINGADGIGTGWSSSTPNYNPEDIVENLKRMMDGE--PLK 914

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG  F TG V           A G+      G   I K +GD+E + +TE+P +
Sbjct: 915  PMQPWFRG--F-TGEVT----------AVGQDRFKFSG---IIKETGDKE-VEITELPIR 957

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +K+ ++++ EK    I D +D +       VI++        I   L     L
Sbjct: 958  TWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHMKTAIAEGLEEKFKL 1017

Query: 334  -QSLFSVNMVALNGYKPERFTLIG----ILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +   PER T       I+K F A R +   RR +Y L++
Sbjct: 1018 SKTMTTTNLVAFD---PERITKYASVEDIMKEFYAVRLKYYERRKQYQLSE 1065


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 186/450 (41%), Gaps = 82/450 (18%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +K   S+S  D   N  L    N    R+IP L DGLKP  R++LF   +     +KK V
Sbjct: 741  DKDTRSISFKD-FVNKELVLFSNADNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEV 796

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
            K A+++G V  M  YH HG  ++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 797  KVAQLAGAVGEMSAYH-HGEQSLMSTIVNLAQDYVGSNNINLLLPIGQ--FGTRLQGGKD 853

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             A+ RY   +L      L   +  + + F    +    EP   C   P VLVNG  GI  
Sbjct: 854  SASPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGT 912

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
              +T +P +N  E+VD               +  +IRG D P   V          +   
Sbjct: 913  AWSTKVPNYNPREIVDN--------------IRRLIRGED-PKPMVPW--------FKNF 949

Query: 245  RGSIVIRGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDI 296
            RG+I           SG+      + + +TE+P +V      E + E + E   K+   I
Sbjct: 950  RGTIEQLDDQRF-ACSGEIAILRDDTLEITELPIRVWTQNYKESVLEPLLEGSDKQPALI 1008

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
             D ++       R VI++      D  +  L++   LQ+  + + + L       F   G
Sbjct: 1009 QDFKEYHTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVL-------FDAAG 1061

Query: 357  ILKAF---------------------VAFREEVVVRRTKYLLNKARD-----RAHVLVGL 390
             L+ F                      AF+E ++  +++ L N+AR      +  +L+  
Sbjct: 1062 CLRKFRNVEEICKEFFETRKKKYIERKAFQEGMLRAQSERLSNQARFILAKIKGEILIEN 1121

Query: 391  AIAVANLDEVVRIIRFSPNPETARRELMQR 420
               VA ++++V+   F P+P    +EL +R
Sbjct: 1122 KRKVAIVEQLVK-KGFDPDPVKKWKELQRR 1150


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 1062

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 49/360 (13%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
           L R+IP + DG KP  R++++   +  +  +   VK A+ SG V     YH HG A++  
Sbjct: 649 LERSIPSVVDGFKPSQRKVIYSAFKRNLTTD---VKVAQFSGYVAEHSAYH-HGEASLQG 704

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
            +  +AQD+    ++  LL EGQ  FGS    G   A+ RY   +L      +  D   +
Sbjct: 705 TIVNLAQDYVGSNNINWLLPEGQ--FGSRLQGGKDHASARYIFTKLNPQTRQVFVDTDDN 762

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
            + +  + DG   EP       P++LVNG  GI  G +TNIP++N  ++VD    +I   
Sbjct: 763 LLKYLYD-DGDKIEPEYYVPVIPSILVNGSSGIGTGWSTNIPSYNPKDIVDNVKRLIAGE 821

Query: 210 D-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           D +++       +G    T           + Y T +G  +  G           + IVV
Sbjct: 822 DLVEMKPWYRGFKGKIEETSP---------DVYVT-KGLYMPNG-----------KTIVV 860

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           +E+P         E +  L+ +K I D  +   ++D     V+ E+    + +V + +L 
Sbjct: 861 SELPIGKWTQDYKEHLDGLLEKKIISDFREKHTDTD-----VLFEIDFIGNPNVDILKLE 915

Query: 329 RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
                 ++ S NM A + Y K +++ T + I++ +   R+++ V+R  YLL     R ++
Sbjct: 916 -----TTIRSTNMHAFDPYGKIKKYDTPLDIIREWFGVRKDLYVKRKAYLLEDLTHRTNI 970


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 161/354 (45%), Gaps = 43/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
           R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 672 RSIPSVVDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 728

Query: 99  RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     + L  + 
Sbjct: 729 GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVNN 788

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD          
Sbjct: 789 VD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDN--------- 834

Query: 211 IDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                L  ++ G +  P      G  G      TG G       S I K +GD E + ++
Sbjct: 835 -----LKRLMVGDELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEIS 882

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL- 327
           E+P +       +K+ ++++ +++   I D +D +       +I++        +   L 
Sbjct: 883 ELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKAVEEGLE 942

Query: 328 YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++  ++ + + NMVA +  G      T   IL+AF   R ++  +R ++LL++
Sbjct: 943 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYTVRIKLYEKRKQHLLSE 996


>gi|3023910|sp|P72065|GYRA_MYCXE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mxe
           gyrA intein
 gi|1907313|gb|AAB81424.1| gyrase subunit A precursor [Mycobacterium xenopi]
          Length = 327

 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 46/63 (73%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WS+R  L++GQGNFGS   DPPAA
Sbjct: 3   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPPAA 62

Query: 128 ERY 130
            RY
Sbjct: 63  MRY 65



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 47/64 (73%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE  L   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 264 TEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 323

Query: 191 PTHN 194
           P HN
Sbjct: 324 PPHN 327


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 177/380 (46%), Gaps = 43/380 (11%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            ++ ++ TD +    + +++  N+   R+IP + DGLKP  R++L+   +  +   KK +K
Sbjct: 653  LSKITYTDFINKELILFSMADNI---RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMK 706

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
               ++G V G   + HG+A++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  VVELAGHVSGMTAYQHGDASLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLQGGSDCASA 766

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 767  RYIYTRLSPFARRVYHSHDDPLLTYNED-DGEKIEPEIYMPVVPMILVNGTDGIGTGWSS 825

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V+    ++D  +I    +    RG                N   T  G  
Sbjct: 826  SIPNYNPEDIVENLRRMMDGEEI--KPMQPWFRG---------------FNGEVTDMGGD 868

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQG 307
              +  S I K +GD+E + +TE+P +       +K+ ++++ EK    I D +D +    
Sbjct: 869  RYK-FSGIIKETGDKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHHK 926

Query: 308  YRVVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIG----ILKAF 361
               VI++ ++  +A +      ++   +S+ + N+VA +   PE R T       ILK F
Sbjct: 927  VHFVIQMDEKHMTAALSEGLEEKFKLTKSIATSNLVAFD---PEGRITKYAGVDDILKEF 983

Query: 362  VAFREEVVVRRTKYLLNKAR 381
               R +   RR +Y L++ +
Sbjct: 984  YTIRLKYYERRKQYQLSEMQ 1003


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 186/450 (41%), Gaps = 82/450 (18%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +K   S+S  D   N  L    N    R+IP L DGLKP  R++LF   +     +KK V
Sbjct: 741  DKDTRSISFKD-FVNKELVLFSNADNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEV 796

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
            K A+++G V  M  YH HG  ++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 797  KVAQLAGAVGEMSAYH-HGEQSLMSTIVNLAQDYVGSNNINLLLPIGQ--FGTRLQGGKD 853

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             A+ RY   +L      L   +  + + F    +    EP   C   P VLVNG  GI  
Sbjct: 854  SASPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGT 912

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
              +T +P +N  E+VD               +  +IRG D P   V          +   
Sbjct: 913  AWSTKVPNYNPREIVDN--------------IRRLIRGED-PKPMVPW--------FKNF 949

Query: 245  RGSIVIRGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDI 296
            RG+I           SG+      + + +TE+P +V      E + E + E   K+   I
Sbjct: 950  RGTIEQLDDQRFA-CSGEIAILRDDTLEITELPIRVWTQNYKESVLEPLLEGSDKQPALI 1008

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
             D ++       R VI++      D  +  L++   LQ+  + + + L       F   G
Sbjct: 1009 QDFKEYHTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVL-------FDAAG 1061

Query: 357  ILKAF---------------------VAFREEVVVRRTKYLLNKARD-----RAHVLVGL 390
             L+ F                      AF+E ++  +++ L N+AR      +  +L+  
Sbjct: 1062 CLRKFRNVEEICKEFFETRKKKYIERKAFQEGMLRAQSERLSNQARFILAKIKGEILIEN 1121

Query: 391  AIAVANLDEVVRIIRFSPNPETARRELMQR 420
               VA ++++V+   F P+P    +EL +R
Sbjct: 1122 KRKVAIVEQLVK-KGFDPDPVKKWKELQRR 1150


>gi|1212749|emb|CAA65085.1| Topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 3/93 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDT 150
            D DP   AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 163/362 (45%), Gaps = 35/362 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 802  RSIPSVIDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 858

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +  +   
Sbjct: 859  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLL-VN 917

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
               DG   EP       P +L+NG  GI  G +T+IP +N  +VV               
Sbjct: 918  NTDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVAN------------- 964

Query: 215  ALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             L  ++ G +  P      G  G      TG G       S I K +GD E + +TE+P 
Sbjct: 965  -LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEITELPI 1016

Query: 274  QVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYT 331
            +       +++ E+++  ++   I D +D +       +I++        +   L  ++ 
Sbjct: 1017 RTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKALEEGLEEKFK 1076

Query: 332  SLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
             ++ + + NMVA +   +  R+ T   IL+AF A R ++  RR ++LL++ + +   L  
Sbjct: 1077 LIKPIATSNMVAFDAEGRITRYETPEDILQAFYAVRIKLYERRKQHLLSQLQSQLDKLSN 1136

Query: 390  LA 391
             A
Sbjct: 1137 QA 1138


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 168/375 (44%), Gaps = 37/375 (9%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            ++ +S TD +    + +++  NV   R+IP + DGLKP  R++L+   +  +   KK +K
Sbjct: 676  VSKISYTDFINKELILFSMADNV---RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMK 729

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
               ++G V G   + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 730  VVELAGHVSGMTAYQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCASA 789

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 790  RYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSS 848

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D  +               P      G TG        R   
Sbjct: 849  SIPNYNPEDIVDNLKRLMDGEETR-------------PMQPWFRGFTGEVTDVGGDRFKF 895

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQG 307
                 S I K +G++E + +TE+P +       +K+ ++++ EK    I D +D +    
Sbjct: 896  -----SGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 949

Query: 308  YRVVIELKRGASADVILNQLYRYTSL-QSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L        +   L     L +++ + N+VA +  G   +  T+  ILK F  +
Sbjct: 950  VHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTY 1009

Query: 365  REEVVVRRTKYLLNK 379
            R +   +R +Y L++
Sbjct: 1010 RLKFYEKRKQYQLSQ 1024


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 161/362 (44%), Gaps = 35/362 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+ M +  V   +K +K   ++G V G   + HG+ +++  + 
Sbjct: 675  RSIPSVIDGLKPGQRKVLYTMFKRNV---RKDIKVVELAGYVSGMTAYQHGDNSLHTTIV 731

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L      + +   
Sbjct: 732  GLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHP-ADEPLLVN 790

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
               DG   EP       P +L+NG  GI  G +T+IP +N  +VV               
Sbjct: 791  NTDDGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVAN------------- 837

Query: 215  ALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             L  ++ G +  P      G  G      TG G       S I K +GD E + +TE+P 
Sbjct: 838  -LKRLMAGEELVPMKPWFRGFKG----EVTGSGDRY--KFSGIIKQTGDNE-VEITELPI 889

Query: 274  QVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYT 331
            +       +++ E+++  ++   I D +D +       +I++        +   L  ++ 
Sbjct: 890  RTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKALEEGLEEKFK 949

Query: 332  SLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
             ++ + + NMVA +  G      T   IL+AF A R ++  RR ++LL++ + +   L  
Sbjct: 950  LIKPIATSNMVAFDAEGRITRYETPEDILQAFYAVRIKLYERRKQHLLSQLQSQLDKLSN 1009

Query: 390  LA 391
             A
Sbjct: 1010 QA 1011


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 165/389 (42%), Gaps = 61/389 (15%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +K   +VS  D   N  L    N    R+IP L DGLKP  R++LF   +     +KK V
Sbjct: 737  DKDTRAVSFKD-FVNKELVLFSNADNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEV 792

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
            K A+++G V  M  YH HG A++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 793  KVAQLAGAVGEMSAYH-HGEASLMSTIVNLAQDYVGSNNINLLLPIGQ--FGTRLQGGKD 849

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             A+ RY   +L      L   + ++ + F    +    EP   C   P VLVNG  GI  
Sbjct: 850  SASPRYIFTQLNPVTRALFPAVDENVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGT 908

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG----PDFPTGAVILGR-TGIKN 239
              +T IP +N  E+VD               +  +IRG    P  P      G    +  
Sbjct: 909  AWSTKIPNYNPREIVDN--------------MRRLIRGEEPKPLIPWFKNFRGTIEKLDE 954

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP----YQVNKAAMLEKIAELVREKRIVD 295
            +     G I + G   IE          +TE+P     Q  K ++LE + E   +K+   
Sbjct: 955  SRYICSGEIALLGDDTIE----------ITELPIRTWTQNYKESVLESMLE-GSDKQPPL 1003

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            I D ++       + V+++      +  +  L++   LQ+  +++ + L       F  +
Sbjct: 1004 IQDFKEYHTDTTVKFVVKMNPAKLREAKMEGLHKIFKLQTAINISSMVL-------FDPL 1056

Query: 356  GILKAFVAF----REEVVVRRTKYLLNKA 380
            G L+ F       +E   +R+ KY+  KA
Sbjct: 1057 GCLRRFSNVEEICKEFFEIRKKKYIERKA 1085


>gi|315287143|ref|ZP_07872183.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
 gi|313630884|gb|EFR98580.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
          Length = 180

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 113/204 (55%), Gaps = 27/204 (13%)

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL
Sbjct: 2   TALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEGL 61

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            IA+ N+D ++++IR S   + A+  LM + +N                         LS
Sbjct: 62  RIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN-------------------------LS 95

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q +AIL++RL RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K 
Sbjct: 96  DKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKV 155

Query: 511 ELDTPRRTRIVEG-LLDMEDEDCI 533
           +    RRT I+ G L+ +EDED I
Sbjct: 156 KYADKRRTEILAGDLVSLEDEDLI 179


>gi|213950466|gb|ACJ54506.1| ParC [Francisella sp. FSC156]
          Length = 174

 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 103/176 (58%), Gaps = 9/176 (5%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI-ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTL 354
           ++DESD ++  ++V+      ++   I+  L   T L+  F VNM  + L+  +P+   L
Sbjct: 58  IQDESDDKEPVKIVLYSATTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNL 116

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 117 LDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 167/393 (42%), Gaps = 49/393 (12%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   +S  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKHISYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+
Sbjct: 724  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCAS 782

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    +D++ + DG   EP       P VLVNG  GI  G +
Sbjct: 783  ARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPQWYLPIIPMVLVNGAEGIGTGWS 841

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  HN  E+              +  L ++I G + P     +     KN   TGR  
Sbjct: 842  TKISNHNPREI--------------MSNLRKMINGEE-PK----VMHPWYKN--FTGRME 880

Query: 248  IVIRG----VSHIEKTSGDREQIVVTEIPY----QVNKAAMLEKIAELVREKRIVDIADL 299
             V  G      +I+   G+R +I  TE+P     Q  K  +LE +A    + + + I+D 
Sbjct: 881  YVSDGRYVQTGNIQILPGNRAEI--TELPVGVWTQNYKENVLEPLANGTEKVKAI-ISDY 937

Query: 300  RDESDRQGYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVNMVALNGYKP--ERF-TL 354
            R+       R VI    G    +       YR   L +  S N +    +     RF T 
Sbjct: 938  REYHTDTTVRFVISFAPGEFERIQAEDGGFYRVFKLTTTLSTNQMHAFDHNNCLRRFPTA 997

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            I ILK F   R E   RR  +L+ +   +A  L
Sbjct: 998  IDILKEFYELRREYYARRKDFLVGQLTAQADRL 1030


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 163/349 (46%), Gaps = 32/349 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   KK VK A +SG V+G   + HG  ++   + 
Sbjct: 811  RSIPSVIDGLKPGQRKVLYTCFKRNV---KKDVKVAELSGYVLGMTAYQHGEQSLQQTII 867

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + + 
Sbjct: 868  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTYN 927

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V            +L 
Sbjct: 928  VD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIV-----------ANLK 975

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM     P  P      G TG   +    R     R +S I    GD E + +TE+P +
Sbjct: 976  RLM--AGEPLVPMEPWFRGFTGEVVSMGGERYKFSGR-ISQI----GDNE-VEITELPIR 1027

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +++ E+++ +++   I D +D +       +I+L    +   I   L  ++  
Sbjct: 1028 SWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKL 1087

Query: 333  LQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +  G   +  ++  IL+ F + R ++  +R ++ L++
Sbjct: 1088 TKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQ 1136


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 168/375 (44%), Gaps = 37/375 (9%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            ++ +S TD +    + +++  NV   R+IP + DGLKP  R++L+   +  +   KK +K
Sbjct: 670  VSKISYTDFINKELILFSMADNV---RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMK 723

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
               ++G V G   + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 724  VVELAGHVSGMTAYQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCASA 783

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 784  RYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSS 842

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D  +               P      G TG        R   
Sbjct: 843  SIPNYNPEDIVDNLKRLMDGEETR-------------PMQPWFRGFTGEVTDVGGDRFKF 889

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQG 307
                 S I K +G++E + +TE+P +       +K+ ++++ EK    I D +D +    
Sbjct: 890  -----SGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 943

Query: 308  YRVVIELKRGASADVILNQLYRYTSL-QSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L        +   L     L +++ + N+VA +  G   +  T+  ILK F  +
Sbjct: 944  VHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTY 1003

Query: 365  REEVVVRRTKYLLNK 379
            R +   +R +Y L++
Sbjct: 1004 RLKFYEKRKQYQLSQ 1018


>gi|60477491|gb|AAX21682.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477503|gb|AAX21688.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477509|gb|AAX21691.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 103/173 (59%), Gaps = 13/173 (7%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +  S     +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHSN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERF 352
           ++DESD ++  ++V+    +K+      I+  L   T L+  F VNM  + L+  +P+  
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVK 114

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            L+ IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR
Sbjct: 115 NLLDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIR 167


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 164/352 (46%), Gaps = 38/352 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   KK VK A +SG V+G   + HG  ++   + 
Sbjct: 811  RSIPSVVDGLKPGQRKVLYTCFKRNV---KKDVKVAELSGYVLGMTAYQHGEQSLQQTII 867

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + + 
Sbjct: 868  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTYN 927

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V            +L 
Sbjct: 928  VD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIV-----------ANLK 975

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM     P  P      G TG   +    R     R +S I    GD E + +TE+P +
Sbjct: 976  RLM--AGEPLVPMEPWFRGFTGEVVSMGGERYKFSGR-ISQI----GDNE-VEITELPIR 1027

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +++ E+++ +++   I D +D +       +I+L    +   I   L  ++  
Sbjct: 1028 SWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKL 1087

Query: 333  LQSLFSVNMVALNGYKPE-RFT----LIGILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +   PE R T    +  IL+ F + R ++  +R ++ L++
Sbjct: 1088 TKTIATSNLVAFD---PEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQ 1136


>gi|60477495|gb|AAX21684.1| ParC [Francisella tularensis subsp. mediasiatica FSC147]
 gi|60477497|gb|AAX21685.1| ParC [Francisella tularensis subsp. mediasiatica]
 gi|213950476|gb|ACJ54511.1| ParC [Francisella novicida]
          Length = 174

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 13/178 (7%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERF 352
           ++DESD ++  ++V+    +K+      I+  L   T L+  F VNM  + L+  +P+  
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVK 114

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            L+ IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 115 NLLDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 163/354 (46%), Gaps = 32/354 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP   DGLK   R++LF  ++  +    K  + A    E    YH HG A+++  +  
Sbjct: 673  RSIPSAIDGLKTSQRKVLFACLKRKLFQEMKVAQLAGYCSEHTA-YH-HGEASLHSTIVN 730

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            MAQD+  S  + L+   G FG+    G   A+ RY   +L K    +  +     +++  
Sbjct: 731  MAQDYVGSNNITLLYPSGQFGTRLQGGKDAASPRYIFTKLNKHTRLIYPEEDDALLNYND 790

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
            + DG   EP       P +L+NG  GI  G +T IP HN  EV+D  + ++D+ +     
Sbjct: 791  D-DGISVEPQYYVPIIPMLLINGSEGIGTGWSTYIPNHNPIEVIDRMLHLLDSSN----- 844

Query: 216  LMEIIRGPDFPTGAVILGRTGIKNAY-ATGRGSIVIRG-VSHIEKTSGDREQIVVTEIPY 273
                 R    P  +++    G + +  A G  +   +G + H+  T+     + + E+P 
Sbjct: 845  ----SRDHGVPPASLLPWFRGFRGSIEAAGLQTYTTQGTIRHLNPTT-----LEILELPI 895

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA---DVILNQLYRY 330
                    + + + +++K I    +   E +   +R  I+L R  S    D+   +L R+
Sbjct: 896  GKWIDDYKKTLWDFLQKKLIRSFTEHHSE-EHVCFR--IQLSRADSTFFLDMSPIELVRF 952

Query: 331  TSLQS-LFSVNMVALN-GYKPERFTLI-GILKAFVAFREEVVVRRTKYLLNKAR 381
              L+S L + NM A +  Y  +RF+    ++KAF+  R ++  RR +YL+ K +
Sbjct: 953  FKLESKLNTNNMHAFDPNYTLQRFSSSDDVIKAFLPVRLDLYNRRKEYLVKKQQ 1006


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 36/349 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L    +  +   KK +K   ++G V G   YH HG+ ++   +
Sbjct: 683  RSIPSVVDGLKPGQRKVLHTCFRRNL---KKDMKVVELAGHVSGMTAYH-HGDVSLQQTI 738

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 739  VGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASARYIYTRLSPFARKVFHSADEPLLTY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP V     P +L+NG  GI  G +++IP +N  EVV+             
Sbjct: 799  NED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEEVVNN------------ 845

Query: 214  DALMEIIRG-PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              L  ++ G P  P      G TG     A G       G   I +  G++E + +TE+P
Sbjct: 846  --LKRLMAGEPTEPMQPWFRGFTG--EVVAVGGDRFKFSG---IIRECGEKE-VEITELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRY 330
             +       +K+ E+++ +++   I D RD +       +I+L        +   L  ++
Sbjct: 898  IRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKF 957

Query: 331  TSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
               +++ + N+VA +  G   +  T+  ILK F   R +   RR ++ L
Sbjct: 958  KLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVVRLKYYERRKQFQL 1006


>gi|325515303|gb|ADZ24285.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668264|gb|ADZ44576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|325668266|gb|ADZ44577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 59

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|325668260|gb|ADZ44574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668262|gb|ADZ44575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 59

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 168/393 (42%), Gaps = 49/393 (12%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   ++  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 672  KGTKHITYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 727

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 728  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCAS 786

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    ++++ + DG   EP+      P VLVNG  GI  G A
Sbjct: 787  ARYIFTLMSPLTRLIFHPLDDPLLEYQTD-DGQRIEPLWYLPIIPMVLVNGAEGIGTGWA 845

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  HN  E++     +I++ +        +   P +   A              GR  
Sbjct: 846  TKIANHNPREIMKNLRRMINSEE-------PVAMHPWYKNFA--------------GRME 884

Query: 248  IVIRG----VSHIEKTSGDREQIVVTEIP----YQVNKAAMLEKIAELVREKRIVDIADL 299
             V  G      +I+   GDR  + +TE+P     Q  K  +LE +A    + + V +++ 
Sbjct: 885  YVSDGRYVHTGNIQILPGDR--VEITELPVGVWTQNYKENVLEALANGTEKVKAV-VSEY 941

Query: 300  RDESDRQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            R+       R V+     E  R  S D    ++++ TS  S   ++    N       T 
Sbjct: 942  REYHTDTTVRFVVSFAPGEFNRIRSEDGGFYRVFKLTSSLSTNQMHAFDQNNCLRRFPTT 1001

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            + +LK F   R E   RR  YL+ +   +A  L
Sbjct: 1002 MDVLKEFYKLRLEYYARRKDYLVGQLTAQADRL 1034


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 168/382 (43%), Gaps = 49/382 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+ N    R+IP+L DGLKP  R++LF  ++     +K+ V
Sbjct: 685  EKDTRTVSFSDFINVELVLYS-NYDNVRSIPNLMDGLKPGQRKVLFTCLKRN---DKREV 740

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 741  KVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 799

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++      D    R  YD + + EPV      P VLVNG  GI  G
Sbjct: 800  SPRYIFTMLSPLARYIFHK--HDDALLRHEYDDNQKIEPVFYTPVIPMVLVNGADGIGTG 857

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    ++D  D               P   +   +    +  + G 
Sbjct: 858  WMTKIPNYNPREIIENLHRMMDGAD---------------PKPMIPYYKNFKGSVESCGE 902

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIP----YQVNKAAMLEKIAELVREKRIVDIADLRD 301
               VI G    E +    +++ +TE+P     Q  K  +LE +     +K    I D ++
Sbjct: 903  YRYVISG----EISVIGPDKVEITELPIGTWTQTYKETVLEPMLH-GSDKTPAIITDYKE 957

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVA------LNGYKPERFTL 354
             +       ++ + R    ++  + L++   LQ+  S+ +M A      LN Y      +
Sbjct: 958  YNTDTAVHFIVIMNRDKLVELERDGLHKAFKLQTTTSITSMCAFDENQCLNKYD----NV 1013

Query: 355  IGILKAFVAFREEVVVRRTKYL 376
            + ILK F   R ++  +R  YL
Sbjct: 1014 VQILKLFYKVRLDMYHKRKDYL 1035


>gi|60477487|gb|AAX21680.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477499|gb|AAX21686.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477501|gb|AAX21687.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477505|gb|AAX21689.1| ParC [Francisella tularensis subsp. holarctica FSC200]
 gi|60477511|gb|AAX21692.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 13/178 (7%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERF 352
           ++DESD ++  ++V+    +K+      I+  L   T L+  F VNM  + L+  +P+  
Sbjct: 58  IKDESDDKEPVKIVLYSATIKKNIKK--IMGHLLVTTDLEKSFRVNMNMIGLDN-RPQVK 114

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            L+ IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 115 NLLDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 163/349 (46%), Gaps = 32/349 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   KK VK A +SG V+G   + HG  ++   + 
Sbjct: 715  RSIPSVIDGLKPGQRKVLYTCFKRNV---KKDVKVAELSGYVLGMTAYQHGEQSLQQTII 771

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + + 
Sbjct: 772  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTYN 831

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V            +L 
Sbjct: 832  VD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIV-----------ANLK 879

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM     P  P      G TG   +    R     R +S I    GD E + +TE+P +
Sbjct: 880  RLM--AGEPLVPMEPWFRGFTGEVVSMGGERYKFSGR-ISQI----GDNE-VEITELPIR 931

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +++ E+++ +++   I D +D +       +I+L    +   I   L  ++  
Sbjct: 932  SWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKL 991

Query: 333  LQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +  G   +  ++  IL+ F + R ++  +R ++ L++
Sbjct: 992  TKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQ 1040


>gi|4545087|gb|AAD22387.1| DNA gyrase A [Serratia marcescens]
          Length = 60

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|67464191|pdb|1X75|A Chain A, Ccdb:gyra14 Complex
 gi|67464192|pdb|1X75|B Chain B, Ccdb:gyra14 Complex
          Length = 132

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 8/131 (6%)

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +
Sbjct: 2   RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 61

Query: 431 IDLIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++   D +          G  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  
Sbjct: 62  LERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLD 121

Query: 483 EIKECLDILSS 493
           +I E L IL S
Sbjct: 122 QIAELLRILGS 132


>gi|197725599|gb|ACH73008.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDT 150
            D DP   AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|60477489|gb|AAX21681.1| ParC [Francisella novicida]
 gi|213950468|gb|ACJ54507.1| ParC [Francisella sp. FSC159]
 gi|213950470|gb|ACJ54508.1| ParC [Francisella novicida]
 gi|213950472|gb|ACJ54509.1| ParC [Francisella novicida]
 gi|213950474|gb|ACJ54510.1| ParC [Francisella novicida]
          Length = 174

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 102/176 (57%), Gaps = 9/176 (5%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI-ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTL 354
           ++DESD ++  ++V+       +   I+  L   T L+  F VNM  + L+  +P+   L
Sbjct: 58  IQDESDDKEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDN-RPQVKNL 116

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 117 LDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477483|gb|AAX21678.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477485|gb|AAX21679.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 104/178 (58%), Gaps = 13/178 (7%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERF 352
           ++DESD ++  ++V+    +K+      I+  L   T L+  F VNM  + L+  +P+  
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKK--IMGHLLVTTDLEKSFRVNMNMIGLDN-RPQVK 114

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            L+ IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 115 NLLDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|66347012|emb|CAI94714.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Fischerkietz]
 gi|66347014|emb|CAI94715.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 87

 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYAELLL 87


>gi|45550206|gb|AAS67881.1| ParC [Salmonella enterica subsp. enterica serovar Reading]
 gi|324331535|gb|ADY38650.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B]
 gi|324331539|gb|ADY38652.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYAELLL 87


>gi|4545077|gb|AAD22382.1| DNA gyrase A [Escherichia coli]
 gi|4545079|gb|AAD22383.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 60

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|94471631|gb|ABF21082.1| DNA gyrase subunit A [Spiroplasma culicicola]
          Length = 86

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 55/74 (74%)

Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
          I  + I +E++  +L Y+++VI+ RA+PDLRDGLKPVHRRI++ M  + +  +  + K A
Sbjct: 13 ILEIDIKNEVEKDFLEYSMSVIVSRALPDLRDGLKPVHRRIIYAMNDLKITSDTPHKKSA 72

Query: 76 RISGEVMGKYHPHG 89
          RI GEV+GKYHPHG
Sbjct: 73 RIVGEVIGKYHPHG 86


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 171/373 (45%), Gaps = 33/373 (8%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  +   KK +K  
Sbjct: 656  VSKISYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYACFRRNL---KKDMKVV 711

Query: 76   RISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
             ++G V G   + HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ RY
Sbjct: 712  ELAGLVSGMTAYQHGETSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASARY 771

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               RL   A  +     +  + +  + DG   EP       P VL+NG  GI  G +++I
Sbjct: 772  IYTRLSPFARKIFHTADEPLLTYNED-DGKKIEPETYMPVVPMVLINGADGIGTGWSSSI 830

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P +N  +VV+    ++    I  + +    RG  F    V +G    K            
Sbjct: 831  PNYNPEDVVNNLKRLMKGEPI--EPMQPWFRG--FTGEVVNMGGDRFK------------ 874

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYR 309
               S I K +GD+E + +TE+P +       +K+ ++++ +++   I D +D +      
Sbjct: 875  --FSGIIKETGDKE-VEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKDYNTHDKVH 931

Query: 310  VVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFRE 366
             VI+L ++   A +      ++   +S+ + N+VA +  G   +  T+  ILK F   R 
Sbjct: 932  FVIQLDEKNMKAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYATVDDILKEFFTVRL 991

Query: 367  EVVVRRTKYLLNK 379
            +   RR ++ L++
Sbjct: 992  KYYERRKQHQLSE 1004


>gi|11359849|gb|AAG34730.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 90

 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 3/90 (3%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA--A 127
           K+ K  R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+ + D DP +   
Sbjct: 2   KFKKSDRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWRAPD-DPKSFVV 60

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RYTE RL K A  LL +LG+ TVD+ PN+
Sbjct: 61  IRYTESRLSKYAEVLLGELGQVTVDWVPNF 90


>gi|168181190|ref|ZP_02615854.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182667970|gb|EDT79949.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 241

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 120/249 (48%), Gaps = 56/249 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T++G +++ ++S +  I + G  A+ L   DE++ V+     ++I++ T+ G C+RF 
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR + GV+ I+L K D+ +SM +V                            
Sbjct: 61  EEDVRPM-GRVATGVKAITLRKTDKAVSMDVV---------------------------- 91

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                    ++++ +L++SE GFGKRT   ++ I  R GKG+  
Sbjct: 92  -------------------------IEDETLLSISENGFGKRTDIEEYPIHRRGGKGVIT 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++  ++ G +V    V ++D+++LV+     IR+ V+EI   SR   GV +  T+++E
Sbjct: 127 YKIT--DKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEE 184

Query: 890 RVVSVERIR 898
           ++V++ +I+
Sbjct: 185 KIVAIAKIK 193


>gi|319444109|gb|ADV58132.1| ParC [Acinetobacter baumannii]
          Length = 93

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 3/87 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RY
Sbjct: 8   KSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRY 66

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNY 157
           TE +L   +  LL +LG+ T +++ N+
Sbjct: 67  TEAKLSAYSELLLSELGQGTSEWQDNF 93


>gi|4545081|gb|AAD22384.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 60

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 217/509 (42%), Gaps = 80/509 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 635  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 690

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 691  VNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLYPSVDDNLLKF 750

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D     
Sbjct: 751  L--YDDNQRVEPEWYIPIIPLVLVNGAEGIGTGWACKLPNYDTREIVNNVKRMLDG---- 804

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            LD    +    +F      LG+    N YA   G I +           DR  I +TE+P
Sbjct: 805  LDPYPLLPSYKNFKGTIQELGQ----NQYAMS-GEIYVL----------DRNTIEITELP 849

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     EK    I+D ++       + V+++     A      L+
Sbjct: 850  VRTWTQVYKEQVLEPMLNGT-EKTPSLISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 908

Query: 329  RYTSLQSLFSVN-------MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL---- 377
            +   LQ+  + N       M  L  Y+    T+  ILK F   R      R ++L+    
Sbjct: 909  KVFKLQTSLTCNSMVLFDHMGCLKKYE----TVQDILKEFFDLRLNYYTLRKEWLIGMLG 964

Query: 378  -------NKARDRAHVLVG-LAIAVANLDEVVRII---RFSPNPETARRELMQRSWNASD 426
                   N+AR     + G ++I      ++++++    F  +P  A +E  ++   A++
Sbjct: 965  AEAARLNNQARFVLEKIQGKISIENKTKRDLIQMLVQKGFESDPVKAWKEAQEK---ATE 1021

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRN-ELNSLGIEI 484
              DL D  +D+S   G+      + +   ++  L   ++  L R  DI++ ELN L    
Sbjct: 1022 EDDLQDPNEDNSSDSGTGSGPDFNYILNMSLWSLSKEKVDELVRQRDIKSKELNDL---- 1077

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELD 513
                     R     + K++L +  +ELD
Sbjct: 1078 --------KRKSPPDLWKEDLAAFVEELD 1098


>gi|116282951|gb|ABJ97451.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 69

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 51/68 (75%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL
Sbjct: 1   RVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARL 60

Query: 136 QKAAHFLL 143
              A  LL
Sbjct: 61  TPIAELLL 68


>gi|284027743|gb|ADB66698.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 81

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           EWN+   K AR+ G+V+GKY+PHG+ A+YD +  MAQ +S R +L++GQGNFG +DGD  
Sbjct: 11  EWNEAKEKSARVVGDVIGKYNPHGDFAVYDNIVLMAQPFSQRYMLVDGQGNFGCIDGDSA 70

Query: 126 AAERYTECRL 135
           AA R TE RL
Sbjct: 71  AAVRKTELRL 80


>gi|325668272|gb|ADZ44580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|1498005|gb|AAB06319.1| DNA gyrase A subunit [Campylobacter coli]
          Length = 60

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA R
Sbjct: 2   YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMR 60


>gi|308445281|gb|ADO32826.1| ParC [Neisseria gonorrhoeae]
 gi|308445283|gb|ADO32827.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHGN++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGNSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 156/352 (44%), Gaps = 38/352 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG+A++   + 
Sbjct: 803  RSIPSVIDGLKPGQRKVLYVSFRRNL---KKDMKVVELAGHVSGMTAYQHGDASLQQTIV 859

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 860  GLAQTFVGSNNVNCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRMFHPADEPLLTYN 919

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP       P +L+NG  GI  G +++IP +N  ++VD    ++D   I   
Sbjct: 920  VD-DGKQIEPENYVPVVPLLLINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEPIK-- 976

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                       P      G  G   A    R        S I K +GD+E + +TE+P +
Sbjct: 977  -----------PMQPWFRGFNGEVTAIGGDRFKF-----SGIIKEAGDKE-VEITELPIR 1019

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +K+ E+++ +K    I D +D +     R VI++        +   L     L
Sbjct: 1020 TWTQDFKDKLEEIIKADKTPSFIKDYKDYNTHTKVRFVIQMDEKHMQSALSEGLEEKFKL 1079

Query: 334  -QSLFSVNMVALNGYKPE-RFTLIG----ILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +   PE R T       ILK F   R +   RR +Y L++
Sbjct: 1080 SKTIATTNLVAFD---PEGRITKYASVDDILKEFFTVRLKFYERRKQYQLSE 1128


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 156/349 (44%), Gaps = 36/349 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L    +  +   KK +K   ++G V G   YH HG+ ++   +
Sbjct: 807  RSIPSVVDGLKPGQRKVLHTCFRRNL---KKDMKVVELAGHVSGMTAYH-HGDVSLQQTI 862

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 863  VGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASARYIYTRLSPFARKVFHSADEPLLTY 922

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP V     P +L+NG  GI  G +++IP +N  +VV+             
Sbjct: 923  NED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEDVVNN------------ 969

Query: 214  DALMEIIRG-PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              L  ++ G P  P      G TG     A G       G   I +  G++E + +TE+P
Sbjct: 970  --LKRLMAGEPTEPMQPWFRGFTG--EVVAVGGDRFKFSG---IIRECGEKE-VEITELP 1021

Query: 273  YQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRY 330
             +       +K+ E+++ +++   I D RD +       +I+L        +   L  ++
Sbjct: 1022 IRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFIIQLDEKHMKVALTEGLEEKF 1081

Query: 331  TSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
               +++ + N+VA +  G   +  T+  ILK F   R +   RR ++ L
Sbjct: 1082 KLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVVRLKYYERRKQFQL 1130


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1398

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 172/389 (44%), Gaps = 39/389 (10%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   +   K A++ G +     
Sbjct: 724  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNECKVAQLVGYIAEHSA 780

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 781  YHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 840

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  +++D
Sbjct: 841  SIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIID 899

Query: 201  GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                 I+      + L+     P  P      GR  I++   TG  +I I  ++ I    
Sbjct: 900  NIKRYINK-----EPLI-----PMVPWYKDFKGR--IESNGKTGYETIGI--INKI---- 941

Query: 261  GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRG 317
             D + + +TE+P +       E + EL+ +++   I D  D S  +     I++   K  
Sbjct: 942  -DNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLQ 1000

Query: 318  ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKY 375
             + +  L ++++  S  +L + NM   +   K +R+ T + ILK F   R +    R  Y
Sbjct: 1001 KAEEEGLEKVFKLKS--TLTTTNMTLFDPNLKLQRYSTELDILKEFCYQRLKAYENRKSY 1058

Query: 376  LLNKARDRAHVL---VGLAIAVANLDEVV 401
            L++K      ++       +A+ N + +V
Sbjct: 1059 LISKLEKEKRIISNKTKFILAIVNNELIV 1087


>gi|324331537|gb|ADY38651.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDNACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYAELLL 87


>gi|60477493|gb|AAX21683.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477507|gb|AAX21690.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 102/173 (58%), Gaps = 13/173 (7%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESD-RQGYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERF 352
           ++DESD ++  ++V+    +K+      I+  L   T L+  F VNM  + L+  +P+  
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKK--IMGHLLATTDLEKSFRVNMNMIGLDN-RPQVK 114

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            L+ IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR
Sbjct: 115 NLLDILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIR 167


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 156/358 (43%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF  ++  +   K  +K A+++G V  +  YH HG A++   +
Sbjct: 795  RSIPQLVDGWKPGQRKVLFACIKKNM---KHELKVAQLAGYVSEVSAYH-HGEASLQQTI 850

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  L  +E  G FGS    G   +A RY   RL      +  +     +++
Sbjct: 851  VTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPILEY 910

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G   EP +     P VL+NG  GI  G ++ +P +N  +V++     ID    ++
Sbjct: 911  EYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGE--EM 967

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +    RG          GR   +NA  TG  +I +     + +   D  +I  TE+P 
Sbjct: 968  QRMTPWYRG--------FRGRIE-ENAAGTGFETIGL-----VRRCGEDSYEI--TELPI 1011

Query: 274  QVNKAAMLEKIAE--LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +       E + E     EKR   IAD RD S  +     +++            L +Y 
Sbjct: 1012 KRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVKVGEERVERPEREGLEKYF 1071

Query: 332  SLQSLFSVNMVALNGYKP----ERFT-LIGILKAFVAFREEVVVRRTKY---LLNKAR 381
             L+S  S+  + L  + P    +R+   + I+K F   R E   RR  Y   +L KAR
Sbjct: 1072 KLKSSLSITNLTL--FDPHGRVQRYANELEIIKEFAPIRLEFYHRRKAYCLAMLEKAR 1127


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 47/290 (16%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+   S++  D + N  + ++ N    R++P++ DGLKP  R++L+   +  +   K  
Sbjct: 689 DERDGNSITYGDFVDNELIHFS-NANNIRSLPNVVDGLKPSQRKVLYACFKRNL---KDE 744

Query: 72  VKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPP 125
           +K A+++G       YH HG A+++  +  MAQD+  S  + L+   G FG+  + G+  
Sbjct: 745 IKVAQLAGYCAEHTAYH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDA 803

Query: 126 AAERYTECRLQKAAHFLL--DDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGG 180
           A+ RY    L   +  L   DD      D   NY   DG   EP   C   P +LVNG  
Sbjct: 804 ASPRYIFTHLSPLSRLLFPVDD------DMLLNYKEEDGQMIEPEYFCPIIPLLLVNGCQ 857

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GI  G +T IP HN  +V++   A +D  +    A+   ++G  F  G  +  +      
Sbjct: 858 GIGTGWSTFIPQHNPLDVLNYIRAKLD--ETKKPAIRPWVKG--FEGGITVDSK------ 907

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIP-------YQVNKAAMLEK 283
               RG  V  G+   +K S     +V++E+P       Y+    AML+K
Sbjct: 908 ----RGDYVTEGIITPQKNSS----VVISELPVGVWTNDYKATLVAMLKK 949


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 156/358 (43%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF  ++  +   K  +K A+++G V  +  YH HG A++   +
Sbjct: 795  RSIPQLVDGWKPGQRKVLFACIKKNM---KHELKVAQLAGYVSEVSAYH-HGEASLQQTI 850

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  L  +E  G FGS    G   +A RY   RL      +  +     +++
Sbjct: 851  VTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPILEY 910

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G   EP +     P VL+NG  GI  G ++ +P +N  +V++     ID    ++
Sbjct: 911  EYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGE--EM 967

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +    RG          GR   +NA  TG  +I +     + +   D  +I  TE+P 
Sbjct: 968  QRMTPWYRG--------FRGRIE-ENAAGTGFETIGL-----VRRCGEDTYEI--TELPI 1011

Query: 274  QVNKAAMLEKIAE--LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +       E + E     EKR   IAD RD S  +     +++            L +Y 
Sbjct: 1012 KRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVKVGEERVERPEREGLEKYF 1071

Query: 332  SLQSLFSVNMVALNGYKP----ERFT-LIGILKAFVAFREEVVVRRTKY---LLNKAR 381
             L+S  S+  + L  + P    +R+   + I+K F   R E   RR  Y   +L KAR
Sbjct: 1072 KLKSSLSITNLTL--FDPHGRVQRYANELEIIKEFAPIRLEFYHRRKAYCLAMLEKAR 1127


>gi|325668270|gb|ADZ44579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 162/386 (41%), Gaps = 57/386 (14%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   +VS  D   N  L    N    R+IP L DGLKP  R++LF   +     +KK VK
Sbjct: 737  KDTRAVSFKD-FVNKELVLFSNADNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEVK 792

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDPP 125
             A+++G V  M  YH HG A++   +  +AQD+    ++ LLL  GQ  FG+    G   
Sbjct: 793  VAQLAGAVGEMSAYH-HGEASLMSTIVNLAQDYVGSNNINLLLPIGQ--FGTRLQGGKDS 849

Query: 126  AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            A+ RY   +L      L   + ++ + F    +    EP   C   P VLVNG  GI   
Sbjct: 850  ASPRYIFTQLNPVTRALFPIVDENVLRFLFEENQRI-EPEWYCPIIPTVLVNGAEGIGTA 908

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T IP +N  E+VD               +  +IRG +            +   +   R
Sbjct: 909  WSTKIPNYNPREIVDN--------------MRRLIRGEE---------PKSLTPWFKNFR 945

Query: 246  GSIV----IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIAD 298
            G+I      R +   E      + I +TE+P +       E + E + E   K+   I D
Sbjct: 946  GTIEKLDDSRYICSGEIALLSDDTIEITELPIRTWTQNYKETVLEPMLEGSDKQPPLIQD 1005

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             ++       + V+++      +  +  L++   LQS  +++ + L       F  +G L
Sbjct: 1006 FKEYHTDTTVKFVVKMNAAKLREAEMEGLHKIFKLQSAINISSMVL-------FDPLGCL 1058

Query: 359  KAFVAF----REEVVVRRTKYLLNKA 380
            + F       +E   +R+ KY+  KA
Sbjct: 1059 RRFPNVEEICKEFFEIRKKKYIERKA 1084


>gi|12642572|gb|AAK00289.1|AF302141_1 ParC [Stenotrophomonas maltophilia]
          Length = 77

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RY
Sbjct: 1   KSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRY 59

Query: 131 TECRLQKAAHFLLDDLGK 148
           TE +L   A  LL +LG+
Sbjct: 60  TESKLTPIAEVLLGELGQ 77


>gi|330685624|gb|EGG97268.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU121]
          Length = 415

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            +E Q  AI+ L+L RLT      +  E + L   IK+   IL     LL +IK EL  +
Sbjct: 26  FTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVIKNELTEI 85

Query: 509 KDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
           + +  T R + I   + +++ D++ +V  E++V++++  GY+KR     + A      G 
Sbjct: 86  RKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTTTRSFNAS-----GV 140

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
           S V ++D D +     V+T  + L F++ G      V +L     +  G+ +  I+S+++
Sbjct: 141 SEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDE 200

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEI 684
            E++  +  F E + S +  + + AT++G ++++ +  F +  R  K  IAMK+  +DE+
Sbjct: 201 DEQVIDV--FNEKDFSQHEAFYIMATRNGMIKKSSVPQF-KTTRYNKPLIAMKVKDQDEV 257

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +++     +  I + T  G  + +  + +    G  + GV+ I+L   D V+   ++ H+
Sbjct: 258 INIMRVESDQLITVITHKGMSLTYSTNELSD-TGLRAAGVKSINLKDEDFVVMTQMINHS 316

Query: 745 DA 746
           ++
Sbjct: 317 ES 318



 Score = 42.0 bits (97), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ +L+++  G+ KRT++  F  S  S  G++  D     
Sbjct: 95  STIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTTTRSFNASGVSEVGLKDGD----- 149

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
              +L+    VN  D  ++ ++KG  + +PV+   EIR          I S  +DE+V+ 
Sbjct: 150 ---SLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVID 206

Query: 894 V 894
           V
Sbjct: 207 V 207


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 191/466 (40%), Gaps = 74/466 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R++P+  DGLKP  R++L+ +MQ    + K  V+  +++G V     YH HG   + + +
Sbjct: 167 RSVPNAIDGLKPSQRKVLYTLMQ---RFEKSEVRVVQLAGAVAHSCAYH-HGEEPLINTI 222

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            R+AQD+  S  L L++  G FG+  + G+  A+ RY    L     ++      D+V  
Sbjct: 223 VRLAQDFVGSNNLNLLQPIGQFGTRLIGGEDCASARYIYTALSPLVRWIFPR-ADDSVLS 281

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
               D    EP   C   P VLVNG  GI  G AT +  +N  +V+     +ID     L
Sbjct: 282 YIEEDNMRIEPQWFCPIIPMVLVNGAEGIGTGWATKVLCYNPKQVIRNVQRMIDGQ--PL 339

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             ++   R           GR  I        G++ +R      + +    Q  +TE+P 
Sbjct: 340 QKMVPFYRNFTGTIKEASEGRFHIS-------GTVTLRP----SRKNAHFIQAEITELPV 388

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA--------------- 318
            V      EK+ +++ +  I  I+  ++       R ++EL +G+               
Sbjct: 389 GVWTQRYKEKVLDVLAKSGI--ISGYKELHTENAVRFLLELPKGSGIWSSANGGRKHALH 446

Query: 319 ---SADVIL-----------NQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVA 363
                D +L           N L R+T ++ +F +   V    Y   R   IG+L A + 
Sbjct: 447 KTLKLDTVLGTSSMVLFDENNSLRRFTRIEEIFELFFEVRRQKYIERRDHQIGVLDAKLR 506

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           F E    R  + +LNK       +     +  +++  +R   F PNP  A         N
Sbjct: 507 FYEN-QCRFVEAVLNKE------ITIEGKSRTDIESTLRQRHFEPNPLKAPNHEDGNELN 559

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            S+   L+D+             + LS  + ++++E R A++T + 
Sbjct: 560 KSEFSYLLDM-----------PIIRLSNEEVKSLIESRDAKVTEMN 594


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 172/393 (43%), Gaps = 49/393 (12%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   ++  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKHITYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+
Sbjct: 724  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCAS 782

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    +D++ + DG   EP       P VLVNG  GI  G +
Sbjct: 783  ARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPQWYLPIIPMVLVNGAEGIGTGWS 841

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  HN  E+              ++ L ++I G + P     +     KN   TGR  
Sbjct: 842  TKIANHNPREI--------------MNNLRKMINGEE-PK----VMHPWYKN--FTGRME 880

Query: 248  IVIRG----VSHIEKTSGDREQIVVTEIPY----QVNKAAMLEKIAELVREKRIVDIADL 299
             V  G      +I+   G+R  + +TE+P     Q  K  +LE +A    + + + ++D 
Sbjct: 881  YVSDGRYVQTGNIQILPGNR--VEITELPVGVWTQNYKENVLEPLANGTEKVKAI-VSDY 937

Query: 300  RDESDRQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            R+       R VI     E +R  + +   +++++ T+  S   ++    N       T 
Sbjct: 938  REYHTDTTVRFVITFATGEFERIQAEEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFPTA 997

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            + ILK F   R E   RR  +L+ +   +A  L
Sbjct: 998  VDILKEFYQLRREYYARRKDFLVGQLTAQADRL 1030


>gi|18175495|gb|AAL60062.1| DNA gyrase subunit A [Yersinia enterocolitica]
 gi|297374128|emb|CBL88422.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374130|emb|CBL88423.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374132|emb|CBL88424.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374134|emb|CBL88425.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374136|emb|CBL88426.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374138|emb|CBL88427.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374140|emb|CBL88428.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374142|emb|CBL88429.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374144|emb|CBL88430.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374146|emb|CBL88431.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374148|emb|CBL88432.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374150|emb|CBL88433.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374152|emb|CBL88434.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374154|emb|CBL88435.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374156|emb|CBL88436.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374158|emb|CBL88437.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374160|emb|CBL88438.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374162|emb|CBL88439.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374164|emb|CBL88440.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374172|emb|CBL88444.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374174|emb|CBL88445.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374176|emb|CBL88446.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374178|emb|CBL88447.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374180|emb|CBL88448.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374182|emb|CBL88449.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374184|emb|CBL88450.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374186|emb|CBL88451.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374188|emb|CBL88452.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374190|emb|CBL88453.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374192|emb|CBL88454.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374194|emb|CBL88455.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374196|emb|CBL88456.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374198|emb|CBL88457.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374200|emb|CBL88458.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374202|emb|CBL88459.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374204|emb|CBL88460.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374206|emb|CBL88461.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374208|emb|CBL88462.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374210|emb|CBL88463.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374212|emb|CBL88464.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374214|emb|CBL88465.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374216|emb|CBL88466.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374218|emb|CBL88467.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374220|emb|CBL88468.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374222|emb|CBL88469.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374224|emb|CBL88470.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374226|emb|CBL88471.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374228|emb|CBL88472.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374230|emb|CBL88473.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374232|emb|CBL88474.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374234|emb|CBL88475.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374236|emb|CBL88476.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374238|emb|CBL88477.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374240|emb|CBL88478.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374242|emb|CBL88479.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374244|emb|CBL88480.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374246|emb|CBL88481.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374248|emb|CBL88482.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374250|emb|CBL88483.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374252|emb|CBL88484.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374254|emb|CBL88485.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374256|emb|CBL88486.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374258|emb|CBL88487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374260|emb|CBL88488.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374262|emb|CBL88489.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374264|emb|CBL88490.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374266|emb|CBL88491.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374268|emb|CBL88492.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374270|emb|CBL88493.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374272|emb|CBL88494.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374274|emb|CBL88495.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374276|emb|CBL88496.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374278|emb|CBL88497.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374280|emb|CBL88498.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella
           virus MT325]
          Length = 1058

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 161/359 (44%), Gaps = 51/359 (14%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R+ILF   +  +      +K A+ SG V     YH HG  ++  A+
Sbjct: 646 RSIPSVVDGLKPSQRKILFAAFKRNLT---NEMKVAQFSGYVAEHSGYH-HGEQSLQGAI 701

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQD+    ++ LLL  GQ  FGS  + G   A+ RY   +L      + +      +
Sbjct: 702 VGMAQDYVGSNNMNLLLPNGQ--FGSRILGGKDCASARYIFTKLSPVTRQVFNQADDVLL 759

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  + DGS  EP       P +LVNG  GI  G +T+IP++N  ++++    +I   ++
Sbjct: 760 KYLED-DGSSIEPEWYVPAIPFLLVNGANGIGTGFSTDIPSYNPKDIINNVKRLISGKEM 818

Query: 212 DLDALMEIIRGPDFP--TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                  +   P +   TG+++              G+   +GV+   K SG  + +VV+
Sbjct: 819 -------VPMTPWYKEFTGSIV----------QNDNGTFTCKGVA---KVSG--KSVVVS 856

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+P     +   + +  LV +K IVD  +   E +     V+ E+      D+ + +L +
Sbjct: 857 ELPIGTWTSDYKDFLEGLVEKKVIVDFREKHTEKN-----VLFEIDFPGEPDLSILKLEK 911

Query: 330 YTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
                ++ + NM A +  G   +    + I+  +   R+    +R  YLL     +A +
Sbjct: 912 -----AIRTTNMHAFDPEGKIKKYADPLDIILDWFEVRKTFYTKRKNYLLKDLSHKAAI 965


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 157/352 (44%), Gaps = 41/352 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DGLKP  R++LF   +  +   K+ +K  ++ G +     YH HG+ ++   +
Sbjct: 660 RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQLGGYIAEHSAYH-HGDISLVTTI 715

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++    ++ LLL  GQ    ++ G   A+ RY    L K   ++  +     V +
Sbjct: 716 IGMAQNFVGSNNINLLLPRGQFGSRAMGGKDHASARYISTVLNKITRYIFPEQDDHVVKY 775

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + DG   EP       P  LVNG  GI  G +T+I  +N  E+V+     ++      
Sbjct: 776 IED-DGEMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPVELVEQIKKRLNGE--QF 832

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP- 272
           D L    R  D              N      G+ +++G+  IE  + + + + + E+P 
Sbjct: 833 DNLTPYYRNFD-------------GNIETQPNGNSLVKGI--IE-CNEETDIVTIKELPI 876

Query: 273 --YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
             +  N    L+K  E+ +E     I DLR+   +  Y++  E++        L   Y Y
Sbjct: 877 KKWTKNYKEWLDK--EISQEGN--PIMDLREYHTK--YKIHFEIQMTEGYVSQLKNPYEY 930

Query: 331 TSLQSLFS-VNMVALNGY-KPERFTLIG-ILKAFVAFREEVVVRRTKYLLNK 379
             L + FS  NMV  +G  K ++F  I  IL+ F   R +   +R  YLL+K
Sbjct: 931 FKLVTPFSNNNMVLFDGQNKIKKFESIAEILEEFYQVRLQFYQKRKDYLLSK 982


>gi|168997715|gb|ACA42555.1| topoisomerase IV [Escherichia coli]
          Length = 88

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/88 (48%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K +  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYSELLL 87


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 23/270 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DG KP  R++L+   +  +   +  +K A+++G V     YH HG A+++  +
Sbjct: 738 RSIPCLVDGFKPSQRKVLYCCFKRNL---RVEIKVAQLAGYVSEHSSYH-HGEASLHGTI 793

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S    L+   G FG+  + G   A+ RY   +L+  A+   D      +++
Sbjct: 794 INMAQDFIGSNNSNLLSPNGQFGTRILGGKDAASPRYIFTKLEAIAYKFFDPNDNSLLNY 853

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + DG   EP       P VLVNG  GI  G ++ IP +N  ++++   A I   +   
Sbjct: 854 L-DEDGQLIEPEWYVPVIPMVLVNGSEGIGTGWSSFIPNYNPLDLIENLRARIKG-EAPT 911

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             L+   RG  F TG+ I  R+G ++  +    + V+RG+ H+E    D   +V+TE+P 
Sbjct: 912 KPLVPWYRG--F-TGS-IEERSGTRDGDSQ---AFVVRGIFHVE----DDSTLVITELPV 960

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDES 303
           +       + +  L+    I D  +   +S
Sbjct: 961 KTWTHTYKQFLESLMENDTIKDFKENHTDS 990


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 163/363 (44%), Gaps = 32/363 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  +   +  +K A+++G V     YH HG A++   +
Sbjct: 761  RSIPSVMDGFKPSQRKVLFCCFKRNL---RAELKVAQLAGYVSEHSAYH-HGEASLQGCI 816

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  + L+   G FG+  + G   A+ RY    L++    +   L  D + +
Sbjct: 817  VNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKY 876

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VLVNG  GI  G ++++P +N  +++ G   +I+  +I  
Sbjct: 877  L-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWSSSVPNYNPLDIIKGLRQMINGEEI-- 933

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              L    RG  F TG ++       N+  T  G+ +++G+  +     D   +VV+E+P 
Sbjct: 934  APLTPWYRG--F-TGHIVEK----ANSRGTDTGNYIVQGLYEVT----DDSTLVVSELPV 982

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI-----LNQLY 328
            +       + +  L+       I D ++          I ++  A +DV      + + +
Sbjct: 983  KSWTQTYKQFLEGLLDAGT---IKDFKENHTDVKVLFTITMEPKALSDVTKAPGGIVKKF 1039

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            +  S  S  ++++    G+  +      I+  F   R E   RR K +L K +D+  +L 
Sbjct: 1040 KLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQKLQDQIKLLS 1099

Query: 389  GLA 391
              A
Sbjct: 1100 NKA 1102


>gi|2501246|sp|Q49608|GYRA_MYCKA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mka
           gyrA intein
 gi|1122294|emb|CAA92431.1| DNA gyrase subunit A [Mycobacterium kansasii]
          Length = 549

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 44/62 (70%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS    PPAA 
Sbjct: 4   RSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNVPPAAM 63

Query: 129 RY 130
           RY
Sbjct: 64  RY 65



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 486 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 545

Query: 191 PTHN 194
           P HN
Sbjct: 546 PPHN 549


>gi|52352239|gb|AAU43281.1| DNA topoisomerase [Acinetobacter baumannii]
          Length = 92

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 3/93 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+ S
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLIEGQGNWAS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDT 150
            D DP   AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|82502212|gb|ABB80134.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 94

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RY
Sbjct: 9   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRY 67

Query: 131 TECRLQKAAHFLLDDLGKDTVDFR 154
           TE +L   +  LL +LG+ T +++
Sbjct: 68  TEAKLSAYSELLLSELGQGTSEWQ 91


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L + A  L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVVRN-LVPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 125/518 (24%), Positives = 222/518 (42%), Gaps = 83/518 (16%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +     +K+ VK A+++G V     YH HG  ++   +
Sbjct: 734  RSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEHSAYH-HGEVSLMSTI 789

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA--AHFLLDDLGKDTV 151
              +A ++    ++ +LL  GQ     + G   A+ RY    L     A F  DD      
Sbjct: 790  INLAHNFVGSNNINILLPIGQFGTRLLGGRDAASARYIFTMLSPVTRAMFCTDD------ 843

Query: 152  DFRPNYDGSFQ-----EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
               PN +  F+     EP   C   P VLVNG  GI  G +T +P H+   VV     ++
Sbjct: 844  --EPNLNFLFEDNQKIEPFWYCPILPLVLVNGCEGIGTGWSTKVPNHDPRIVVKNLKRLM 901

Query: 207  DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            ++ ++           P +P      G     NA          R V   E  S D   +
Sbjct: 902  NDEEL----------LPMYPWYKNFQGEISTLNAS---------RFVCFGEIASVDDTTL 942

Query: 267  VVTEIP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +TE+P     Q  K ++LE +      K+ V I D ++       R +I + +   A+ 
Sbjct: 943  EITELPIGTWTQNYKESVLEPMLYGADGKQPV-IQDFKEYHTDTTVRFIIRMSKEKMAEA 1001

Query: 323  ILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
              + +++Y  LQ++ + + + L   +G   +  T   IL +F   R ++ V+R  YL   
Sbjct: 1002 NAHGIHKYFKLQTIINSSSMVLFDEHGCLKKFETAKDILISFYKVRLDMYVKRKAYLEGH 1061

Query: 380  ARDRAHVLVGLA-IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK---------- 428
               +A+ L   A   +  ++ V++I       +    +L++R + A  +K          
Sbjct: 1062 LEAQANRLKAQARFIMEKIEGVIKIENMK--KKHIVEQLVERGYPADPVKKWKEAENMRK 1119

Query: 429  -----DLIDLIDDSS---YTIGSDGTMYLSEVQTRAILELRLARLTGLGRD------DIR 474
                 + +D  D+++    T  ++  + LS+     +L + L RL+   +D      D++
Sbjct: 1120 LKAMEEFVDETDEANEVEETGANEEDVCLSDYD--YLLSMALIRLSEEEKDKLLKDRDVK 1177

Query: 475  -NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
             +ELNSL  +  + L I     + L ++ +  LS K+E
Sbjct: 1178 IDELNSLKAKTPKMLWI-EDLDKFLDVLDKHELSEKEE 1214


>gi|308445291|gb|ADO32831.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMGRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|4545085|gb|AAD22386.1| DNA gyrase A [Enterobacter cloacae]
          Length = 55

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/54 (62%), Positives = 46/54 (85%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 55


>gi|313192278|emb|CBY05947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 108

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYD
Sbjct: 47  RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 106

Query: 159 GS 160
           G+
Sbjct: 107 GN 108


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 161/352 (45%), Gaps = 38/352 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   +K +K   ++G V G   + HG+ ++   + 
Sbjct: 815  RSIPSVVDGLKPGQRKVLYTCFKRNV---RKDIKVVELAGYVSGMTAYQHGDVSLQQTIV 871

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 872  GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLLTYN 931

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P VL+NG  GI  G +T+IP +N  ++V     ++D     L 
Sbjct: 932  VD-DGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGE--PLV 988

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG  F    V LG    K    +GR S V           G+ E + +TE+P +
Sbjct: 989  PMQPWFRG--FTGEVVSLGGERYK---FSGRISQV-----------GENE-VEITELPIR 1031

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                   +++ E+++ +++   I D +D +       VI+L    +A  I   L     L
Sbjct: 1032 CWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKL 1091

Query: 334  -QSLFSVNMVALNGYKPE-RFTLI----GILKAFVAFREEVVVRRTKYLLNK 379
             +++ + N+VA +   PE R T       IL+ F + R +   +R +Y L++
Sbjct: 1092 SKTIATSNLVAFD---PEGRITKYDSPEDILREFYSVRIKFYEKRKQYQLSQ 1140


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L + A  L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVVRN-LVPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L + A  L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVVRN-LVPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 166/381 (43%), Gaps = 47/381 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK    VS +D +    + Y+ N    R+IP++ DG KP  R++LF  ++     +K+ V
Sbjct: 726  EKETRDVSFSDFVNVELVLYS-NYDNVRSIPNMMDGFKPGQRKVLFTCLKRN---DKREV 781

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 782  KVAQLAGSVAEHSAYH-HGETSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSA 840

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++      D    +  YD + + EPV      P VLVNG  GI  G
Sbjct: 841  SPRYIFTMLSPLARYIFH--KHDDPLLKYEYDDNQRIEPVYYVPVIPMVLVNGADGIGTG 898

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++               L  ++ G D P   +   +       + G 
Sbjct: 899  WMTKIPNYNPREIIEN--------------LQRMMEGAD-PKPMIPYYKNFKGVVESCGD 943

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDE 302
               VI G    E +    +++ +TE+P      A  E + E +    EK    I D ++ 
Sbjct: 944  FRYVISG----EISVIGPDKVEITELPIGTWTQAYKETVLEPMLHGTEKTPAIITDYKEY 999

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVA------LNGYKPERFTLI 355
            +       ++ + R    ++  + L++   LQ+  ++ +M A      LN Y+    +++
Sbjct: 1000 NTDTAVHFIVMMNRDKLVELERDGLHKTFKLQTTMTITSMCAFDENQCLNKYE----SVV 1055

Query: 356  GILKAFVAFREEVVVRRTKYL 376
             ILK F   R +   +R  YL
Sbjct: 1056 QILKGFYKVRMDTYHKRKDYL 1076


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 47/357 (13%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R++P L DGLKP  R++L+  ++     +K+ VK A+++G V  +  YH HG  ++  
Sbjct: 703  LERSVPSLCDGLKPGQRKVLYTCLRRN---DKREVKVAQLAGSVAELSAYH-HGEQSLLG 758

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  L L++  G FG+    G   A+ RY    L      L   + ++ +
Sbjct: 759  TIINMAQNYVGSNNLNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLTRLLFPQVDENLL 818

Query: 152  DFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
             ++  YD + + EP   C   P VLVNG  GI  G +T +P H++ EVV     +I+  +
Sbjct: 819  TWQ--YDDNQKVEPSWYCPIIPTVLVNGTEGIGTGWSTRVPNHDIREVVKNIKRLINGEE 876

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI----VIRGVSHIEKTSGDREQI 266
                        P  P             +Y   RG+I      R V   E    D + +
Sbjct: 877  ----------PVPMLP-------------SYKNFRGTIEEVEANRYVVSGEAALIDDQTV 913

Query: 267  VVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             +TE+P +    A  E + E +    +K    I + ++ +     R ++++       + 
Sbjct: 914  EITELPIKSWTQAYKESVLEPLVAGTDKAPQQILEYKEYNTDITVRFLVKMGADKLKTME 973

Query: 324  LNQLYRYTSLQSLFSVN--MVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYL 376
             + L+++ SLQ+  S N  +V  + + +  +F T + IL  F   R ++  +R  +L
Sbjct: 974  RSGLHKFLSLQNSLSCNNTLVLFDEFGRLRKFNTTVEILLEFYKIRSKLYEKRKDFL 1030


>gi|1333777|emb|CAA43745.1| unnamed protein product [Mycoplasma genitalium]
          Length = 131

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 79/130 (60%), Gaps = 4/130 (3%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T+S  GY+KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  
Sbjct: 6   ENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDK 65

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ +  ++P G    +G   +N++ + + ERI +++      +++++ Y  F TK+G
Sbjct: 66  GKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSV----NNYDDGYFFFCTKNG 121

Query: 656 NVRRNKLSDF 665
            V+R  L++F
Sbjct: 122 IVKRTSLNEF 131



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T+S  G+ KR     + + +R G G++       + I  L+     +D   ++  
Sbjct: 6   ENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSD---LLFF 62

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +DKG + R+  ++I    R  KG   V +    KDER+ S+
Sbjct: 63  TDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSL 103


>gi|60477417|gb|AAX21645.1| ParC [Wolbachia persica]
          Length = 174

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 101/174 (58%), Gaps = 9/174 (5%)

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +++
Sbjct: 4   YKSGNGSIRQQAVYGYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQ 59

Query: 301 DESD-RQGYRVVI-ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIG 356
           DESD ++  ++V+       +   I+  L   T L+  + VNM  + L+  +P+   L+ 
Sbjct: 60  DESDDKEPVKIVLYSATTKKNIKKIMEHLLATTDLEKSYRVNMNMIGLDN-RPQVKNLLD 118

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           IL  ++ +R+  + RR +  L+K  DR H+L GL +A  N+DEV+ IIR   +P
Sbjct: 119 ILNQWLEYRKHTLRRRLQASLDKVLDRLHILEGLLVAFLNIDEVIDIIRNYDDP 172


>gi|213856910|ref|ZP_03384150.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 66

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 49/64 (76%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG 
Sbjct: 1   TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 60

Query: 248 IVIR 251
           + IR
Sbjct: 61  VYIR 64


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 159/366 (43%), Gaps = 55/366 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP   DGLKP  R+I+  ++       K+  K + +SG V    +YH HG  ++   +
Sbjct: 365 RSIPSSIDGLKPTQRKIIHTLLNHS----KQEYKVSSLSGLVTTYAQYH-HGEQSLQQTV 419

Query: 98  ARMAQDWS----LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ+++    + LLL  GQ    S+ G   A  RY   +L      L ++    T+++
Sbjct: 420 VAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYISTKLSSLTTKLFNEDDLHTLNY 479

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + +G   EP       P VL+NG  GI  G +T +P  N  E+   C  +        
Sbjct: 480 L-DEEGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREI---CQQI-------- 527

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--VSHIEKTSGDREQIVVTEI 271
                 +RG +F    ++    G   +   G    + +G  + H       +  + +TEI
Sbjct: 528 ---KRKLRGEEFE--ELVPWYKGFTGSITAGTNQYIAKGSFIQH-------KNHLYITEI 575

Query: 272 P-------YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           P       YQ    + +E +AE   E  I+D+ +        G +V  ELK   + +V+ 
Sbjct: 576 PPKKSVKEYQAFIQSKME-VAEGKSEPEILDMKEY-----HAGNKVCFELK--VTDEVLK 627

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIG-ILKAFVAFREEVVVRRTKYLLNKAR 381
             + +Y  LQ+  ++  + L   K   +R++ +  IL  F   R +    R +YLL+K +
Sbjct: 628 QDIEKYFKLQTTIAMTNLVLFNEKGLLKRYSNVSEILDEFYQTRIKFYQLRKEYLLSKYQ 687

Query: 382 DRAHVL 387
           +   ++
Sbjct: 688 NELELV 693


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 163/386 (42%), Gaps = 57/386 (14%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+ N    R+IP++ DG KP  R+++F  ++     +K+ V
Sbjct: 679  EKDTRTVSFSDFINVELVLYS-NYDNVRSIPNMIDGFKPGQRKVMFTCLKRN---DKREV 734

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 735  KVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLTGGKDAA 793

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++      D    +  YD + + EPV      P +LVNG  GI  G
Sbjct: 794  SPRYIFTMLSPLARYIFH--KHDDALLKHEYDDNQKIEPVFYVPVIPMILVNGADGIGTG 851

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    ++D  D               P         G+  +    R
Sbjct: 852  WMTKIPNYNPREIIENLHRMMDGADPK-------------PMSPYYKNFKGVVESCGDYR 898

Query: 246  ----GSIVIRGVSHIEKTSGDREQIVVTEIP----YQVNKAAMLEKIAELVREKRIVDIA 297
                G I + G   +E          +TE+P     Q  K  +LE +     EK    I 
Sbjct: 899  YVISGEISVIGPDKLE----------ITELPIGTWTQTYKETVLEPMLH-GSEKIPAIIT 947

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVA------LNGYKPE 350
            D ++ +       +I L R    ++    L++   +QS  ++ +M A      LN Y+  
Sbjct: 948  DYKEYNTDTAVHFIIILNRDKLLELEREGLHKAFKIQSTTTITSMCAFDENQCLNKYE-- 1005

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYL 376
               +I ILK F   R E   +R  YL
Sbjct: 1006 --NVIQILKVFYKVRLETYHKRKDYL 1029


>gi|33578059|gb|AAQ22353.1| ParC [Salmonella enterica subsp. enterica serovar Stanley]
          Length = 83

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAA 139
           G+ D DP   AA RYTE RL K A
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYA 83


>gi|7682321|gb|AAF67217.1|AF144766_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682325|gb|AAF67219.1|AF144768_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682328|gb|AAF67220.1|AF144769_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682330|gb|AAF67221.1|AF144770_1 topoisomerase IV subunit A [Streptococcus sanguinis]
 gi|7682332|gb|AAF67222.1|AF144771_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682323|gb|AAF67218.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 2   FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 166/379 (43%), Gaps = 40/379 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF  ++     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 848  RSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 903

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L +++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 904  VNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSNLLKF 963

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  IP +++ E+V+    ++   +  
Sbjct: 964  L--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDVREIVNNINRMLSRQE-P 1020

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L  L      P +     ++   G      +G  S++            D+  + +TE+P
Sbjct: 1021 LQML------PSYKGFKGVIHELGQNQYLVSGEVSVI------------DKNTVEITELP 1062

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +    A  E + E +    +K    I+D ++       + ++ +     A      L++
Sbjct: 1063 VRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTVKFLVRMSEEKLAQAEAAGLHK 1122

Query: 330  YTSLQSLFSVN-MVALNGYKPER--FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               LQS  + N MV    ++PE   F  +G LK + +  ++++    +  L+  + R   
Sbjct: 1123 VFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESV-QDILKEFFELRLHYYKLRRDW 1181

Query: 387  LVG-LAIAVANLDEVVRII 404
            LVG L    A L    R +
Sbjct: 1182 LVGSLGAEAAKLSNQARFV 1200


>gi|297374168|emb|CBL88442.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|308445279|gb|ADO32825.1| ParC [Neisseria gonorrhoeae]
 gi|308445287|gb|ADO32829.1| ParC [Neisseria gonorrhoeae]
 gi|308445293|gb|ADO32832.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|3767588|dbj|BAA33853.1| ParC subunit of DNA topoisomerase IV [Enterococcus faecalis]
          Length = 69

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M + G  ++K + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN
Sbjct: 1   LFSMNKDGNTFDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGN 60

Query: 117 FGSVDGDPP 125
            GS+DGDPP
Sbjct: 61  NGSMDGDPP 69


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain
           Friedlin]
          Length = 1236

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 126/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G   AA RY   +L + A  L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVVRN-LVPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 1058

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 120/268 (44%), Gaps = 34/268 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R+ILF  ++  +    K  + A  + E  G YH HG A++  A+  
Sbjct: 646 RSIPSVVDGLKPSQRKILFSALKRNLVQEIKVAQFAGYTSENAG-YH-HGEASLQGAIVG 703

Query: 100 MAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           MAQD+    ++ LLL  GQ  FGS    G   A+ RY   +L      +     +  +++
Sbjct: 704 MAQDYVGSNNINLLLPRGQ--FGSRLHGGKDSASARYIFTQLSPNTRDIFHKADERLLNY 761

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + DG   EP       P +LVNG  GI  G +TNIP +N  ++VD    +I+N  +  
Sbjct: 762 LED-DGDRIEPEYYVPTIPFLLVNGSSGIGTGFSTNIPAYNPKDIVDNVKRLINNETM-- 818

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                       P      G  G  +   T  G     GV  I+  +     + V+E+P 
Sbjct: 819 -----------LPMTPWYRGFKG--DIKETSPGVFTCSGVYDIKGKT-----VTVSELPV 860

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRD 301
                   E +  L+ EK+IV  AD R+
Sbjct: 861 GTWTNDYKEHLETLI-EKKIV--ADFRE 885


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 168/381 (44%), Gaps = 44/381 (11%)

Query: 12   EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ G T +S  + +    + + + V L R+IP L DGLKP  R+IL+ ++    E  +  
Sbjct: 693  EDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNNMDESTE-- 749

Query: 72   VKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPP 125
            +K ++++G V  +  YH HG  ++   + RM Q +  S  L L++  G FG+    G+  
Sbjct: 750  IKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDA 808

Query: 126  AAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            A+ RY    L      L     DDL +  V+     +G   EP  LC   P +L+NG  G
Sbjct: 809  ASARYIFTALAPTTRLLFPQADDDLLQKNVE-----EGMVVEPTWLCPIVPLILINGTEG 863

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVID--NPDIDLDALMEIIRGP---DFPTGAVILGRTG 236
            I  G +T I   N  +++D     ID  + + ++    E  RG      PT  +  G+  
Sbjct: 864  IGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKFISSGKIQ 923

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
            +            IR     E+ +     I + E+P  +  +   EK++++V    +++ 
Sbjct: 924  L------------IRP----ERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEF 967

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQ-LYRYTSLQSLFSVNMVAL--NGYKPERFT 353
            ++ R    R  +R+ ++ K+ +      N  L  Y  L++  + N V    NG   E   
Sbjct: 968  SE-RHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGN 1026

Query: 354  LIGILKAFVAFREEVVVRRTK 374
            +  I   F   R ++  +R K
Sbjct: 1027 ISEIAAEFFEVRRDLYEKRLK 1047


>gi|308445285|gb|ADO32828.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYGAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|7682339|gb|AAF67225.1|AF144774_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 2   FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 173/373 (46%), Gaps = 39/373 (10%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            ++ +S TD +    + +++  NV   R+IP + DGLKP  R++L+   +  +   KK +K
Sbjct: 771  VSKISYTDFINKELILFSMADNV---RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMK 824

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
               ++G V G   + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 825  VVELAGHVSGMTAYQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCASA 884

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 885  RYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSS 943

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D          E  R    P      G TG      T  G  
Sbjct: 944  SIPNYNPEDIVDNLKRLMDG---------EETR----PMQPWFRGFTG----EVTDVGGD 986

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
              +  S I K +G++E + +TE+P +       +K+ ++++ ++      ++D  D   +
Sbjct: 987  RFK-FSGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSF--IKDYKDYNTH 1042

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFRE 366
              + E    ++    L + ++ +  +++ + N+VA +  G   +  T+  ILK F  +R 
Sbjct: 1043 TKLDEKNMKSALSEGLEEKFKLS--KTVATTNLVAFDPEGRITKYATVDDILKEFYTYRL 1100

Query: 367  EVVVRRTKYLLNK 379
            +   +R +Y L++
Sbjct: 1101 KFYEKRKQYQLSQ 1113


>gi|329124307|gb|AEB72031.1| DNA topoisomerase IV subunit C [Aeromonas sp. 58(2011)]
          Length = 84

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 3/82 (3%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++
Sbjct: 4   QRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLVD 63

Query: 113 GQGNFGSVDGDPP--AAERYTE 132
           GQGN+G+ D DP   AA R+TE
Sbjct: 64  GQGNWGAPD-DPKSFAAMRFTE 84


>gi|308445289|gb|ADO32830.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 86.3 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial;
           Short=DNA topoisomerase II; Flags: Precursor
          Length = 1054

 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 168/381 (44%), Gaps = 44/381 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+ G T +S  + +    + + + V L R+IP L DGLKP  R+IL+ ++    E  +  
Sbjct: 577 EDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNNMDESTE-- 633

Query: 72  VKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPP 125
           +K ++++G V  +  YH HG  ++   + RM Q +  S  L L++  G FG+    G+  
Sbjct: 634 IKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDA 692

Query: 126 AAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           A+ RY    L      L     DDL +  V+     +G   EP  LC   P +L+NG  G
Sbjct: 693 ASARYIFTALAPTTRLLFPQADDDLLQKNVE-----EGMVVEPTWLCPIVPLILINGTEG 747

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVID--NPDIDLDALMEIIRGP---DFPTGAVILGRTG 236
           I  G +T I   N  +++D     ID  + + ++    E  RG      PT  +  G+  
Sbjct: 748 IGTGWSTKIANRNPIDIIDMIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKFISSGKIQ 807

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           +            IR     E+ +     I + E+P  +  +   EK++++V    +++ 
Sbjct: 808 L------------IRP----ERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEF 851

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQ-LYRYTSLQSLFSVNMVAL--NGYKPERFT 353
           ++ R    R  +R+ ++ K+ +      N  L  Y  L++  + N V    NG   E   
Sbjct: 852 SE-RHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGN 910

Query: 354 LIGILKAFVAFREEVVVRRTK 374
           +  I   F   R ++  +R K
Sbjct: 911 ISEIAAEFFEVRRDLYEKRLK 931


>gi|297374166|emb|CBL88441.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 147/333 (44%), Gaps = 44/333 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 746  RSIPSLVDGFKPGQRKVLFTCCKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 801

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 802  VNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPAVDDNLLKF 861

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  IP ++  E+V+    ++D     
Sbjct: 862  L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDTREIVNNVRRMLDG---- 915

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            LD L  +    +F  GA+             G+   V+ G  ++     DR  + +TE+P
Sbjct: 916  LDPLPMLPNYKNF-KGAI----------QELGQNQYVVSGEIYV----VDRNTVEITELP 960

Query: 273  Y----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     EK    I+D ++       + V+++     A      L+
Sbjct: 961  VRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1019

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            +   LQ+  + N + L       F  +G LK +
Sbjct: 1020 KVFKLQTSLTCNSMVL-------FDHMGCLKKY 1045


>gi|7682337|gb|AAF67224.1|AF144773_1 topoisomerase IV subunit A [Streptococcus oralis]
          Length = 61

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 2   FHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
          Length = 1677

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 172/379 (45%), Gaps = 43/379 (11%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            S+S +D +    + +++   + R+IP + DG KP  R++L+   +  +  +KK V+ +  
Sbjct: 780  SISYSDFINRELILFSMADNM-RSIPSVLDGFKPGQRKVLYACFKRNLVKDKKVVELSGY 838

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
              E    YH HG A++   +  +AQ++  S  +  +E  GNFGS    G   A+ RYT  
Sbjct: 839  VSEQTA-YH-HGEASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGSDAASPRYTFT 896

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            RL   A  +   + +  +  + + DG   EPV      P VLVNG  GI  G +T+IP +
Sbjct: 897  RLSPFARKIFSPMDEPNLQHQ-HEDGKKIEPVAYAPIIPMVLVNGADGIGTGWSTSIPNY 955

Query: 194  NLGEVVD------GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            +  ++V       G +   D  ++  + +M   RG                   A G   
Sbjct: 956  HPEDIVRNLKRRMGRLDEKDGEELPFETMMPWFRG-------------WKGQPEAAGPDR 1002

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESD 304
                G++  ++   +  +I ++E+P +V   +  A LEKI  +        I D ++ +D
Sbjct: 1003 YKFNGIA--QQNERNPNEITISELPIRVWTDDFKARLEKI--ISGNDGPAWIKDYKEFND 1058

Query: 305  RQ--GYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVNMVALN--GYKPERFTLIGIL 358
                 + V+++ K     + +L +  L R+  L+ + + N+VA +  G   +   +  IL
Sbjct: 1059 HSVVHFEVMMDEKH---TEKVLEEGILERFKLLKQVATSNLVAFDSRGQIRKYEKVEDIL 1115

Query: 359  KAFVAFREEVVVRRTKYLL 377
            + +  +R ++   R KY L
Sbjct: 1116 EEYYHYRFDMYTERKKYWL 1134


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 169/367 (46%), Gaps = 21/367 (5%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            +S +  +QN ++ +++   + R+IP + DG KP  R++++   +  +  ++K V+ A   
Sbjct: 788  ISYSQFLQNEFILFSMADNI-RSIPSMIDGFKPGQRKVIYSAFKRNLVNDQKVVELAGYI 846

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECR 134
             E    YH HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ RY   R
Sbjct: 847  SE-QAAYH-HGEQSLQQTIIGLAQTFVGSNNVNCLEPSGNFGSRLSGGKDSASARYIHTR 904

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L   A  +   L +  ++++ + DG+  EP V     P VLVNG  GI  G +T+IP ++
Sbjct: 905  LSPFARKVFSKLDEPNLEYQFD-DGNMIEPKVYAPILPMVLVNGADGIGTGWSTSIPNYH 963

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
               +V+     +   D D     +    P  P      G  G     A  +      G+ 
Sbjct: 964  PMHIVENLRRRMGRFDPD-----DTEEKPFVPMAPWWRGWKGTPEQEAPNKWR--FNGI- 1015

Query: 255  HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIE 313
             I +   +  +I VTE+P ++       K+ ++++ +K    I D ++ +D +    +I+
Sbjct: 1016 -IRQDEQNPNEIHVTELPIRMWTDDFKAKLEDIIQNDKTPTFIKDYKEFNDHKTVHFIID 1074

Query: 314  L-KRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVV 370
            + ++   A +    L ++    ++ + N+VA +  G   +   +  I++ +  +R ++  
Sbjct: 1075 MDEKHREAALREGLLEKFKLTTTVSTTNLVAFDTQGKIRKYDNVEEIMEEYYHYRLKMYT 1134

Query: 371  RRTKYLL 377
             R K+ L
Sbjct: 1135 ERKKHWL 1141


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 39/380 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   +S +D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 667  KGTKHISYSDFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 722

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 723  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCAS 781

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    ++++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 782  ARYIFTLMSPLTRLIYHPLDDPLLEYQTD-DGQRIEPLWYLPIIPMVLVNGAEGIGTGWS 840

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  +N  E+      +I+  +               P        TG     + GR  
Sbjct: 841  TKIANYNPREITRNLRRMINEEE-------------PLPMHPWYKNFTGRMEYISDGR-- 885

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESD 304
             V  G  +I+   G+R  + +TE+P  V      E + E +    EK    +++ R+   
Sbjct: 886  YVHTG--NIQILPGER--VEITELPIGVWTQNYKENVLEALSNGTEKVKAIVSEYREYHT 941

Query: 305  RQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
                R VI     E +R  S D    ++++ +S  S+  ++    N       +   +LK
Sbjct: 942  DTTVRFVISFAPGEFRRIQSEDGGFYRVFKLSSTLSINQMHAFDQNNCLRRYASSTDVLK 1001

Query: 360  AFVAFREEVVVRRTKYLLNK 379
             F   R E   RR +YL+ +
Sbjct: 1002 EFYQLRVEYYGRRKEYLVGQ 1021


>gi|7682335|gb|AAF67223.1|AF144772_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 2   FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 163/380 (42%), Gaps = 39/380 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   +S +D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 667  KGTKHISYSDFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 722

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 723  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCAS 781

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    ++++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 782  ARYIFTLMSPLTRLIYHPLDDPLLEYQTD-DGQRIEPLWYLPIIPMVLVNGAEGIGTGWS 840

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  +N  E+      +I+  +               P        TG     + GR  
Sbjct: 841  TKIANYNPREITRNLRRMINEEE-------------PLPMHPWYKNFTGRMEYISDGR-- 885

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESD 304
             V  G  +I+   G+R  + +TE+P  V      E + E +    EK    +++ R+   
Sbjct: 886  YVHTG--NIQILPGER--VEITELPIGVWTQNYKENVLEALSNGTEKVKAIVSEYREYHT 941

Query: 305  RQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
                R VI     E +R  S D    ++++ +S  S+  ++    N       +   +LK
Sbjct: 942  DTTVRFVISFAPGEFRRIQSEDGGFYRVFKLSSTLSINQMHAFDQNNCLRRYASSTDVLK 1001

Query: 360  AFVAFREEVVVRRTKYLLNK 379
             F   R E   RR +YL+ +
Sbjct: 1002 EFYQLRVEYYGRRKEYLVGQ 1021


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 170/388 (43%), Gaps = 39/388 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           KG  S++  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 553 KGTKSITYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 608

Query: 74  CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A++SG V  M  YH HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+
Sbjct: 609 VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCAS 667

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY    +      +   L    +D++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 668 ARYIFTIMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWS 726

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T I  +N  E++     +I+  +    ++M        P     LGR      Y +  G 
Sbjct: 727 TKISNYNPREIMKNLRKMINGQE---PSVMH-------PWYKNFLGRM----EYVSD-GR 771

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESD 304
            +  G  +I+  SG+R +I  +E+P  V      E + E +    EK    I++ R+   
Sbjct: 772 YIQTG--NIQILSGNRLEI--SELPVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHT 827

Query: 305 RQGYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVN-MVALNGYKP-ERF-TLIGILK 359
               R VI    G    +   +   YR   L +  S N M A +      RF T I ILK
Sbjct: 828 DTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILK 887

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVL 387
            +   R E   RR  +L+ +   +A  L
Sbjct: 888 EYYKLRREYYARRRDFLVGQLTAQADRL 915


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 156/361 (43%), Gaps = 43/361 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             RAIP + DGLKP  R++L+   + G+    + +K A+++G V     YH HG  +++  
Sbjct: 1028 ARAIPSVVDGLKPGQRKVLYASFKRGL---TQEMKVAQLAGYVAEHTAYH-HGEESLHGT 1083

Query: 97   LARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            +  MAQD+    +L LLL  GQ  FG+    G   A+ RY   +L      +  DL    
Sbjct: 1084 IVNMAQDFVGANNLPLLLPSGQ--FGTRLQGGKDAASARYIFTKLAPLTRTIFPDLDDPV 1141

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +++    DG   +P       P VLVNG  G+ +G  T+IP +N   ++D  + ++ N  
Sbjct: 1142 LNYLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTSIPMYNPTNLIDNLLRLLHN-- 1198

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              ++ L    +G  F  G+V L        Y    G I      HI K         ++E
Sbjct: 1199 EPMEPLTPWYKG--F-KGSVELTPPFTFKTY----GVIEPTKKEHIFK---------ISE 1242

Query: 271  IPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ--- 326
            +P +       E +   V+ EK    + D  + +  Q     +   RGA A  I      
Sbjct: 1243 LPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNTDQKVDFEVTFPRGAEAKPIPQNAQD 1302

Query: 327  LYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT----KYLLNKA 380
            L +   L+S F + MV    +G   E    + I++ F   R E   +R     K L N+A
Sbjct: 1303 LLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDIIRDFFEVRMEYYAKRKAAREKVLENEA 1362

Query: 381  R 381
            +
Sbjct: 1363 K 1363


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 130/552 (23%), Positives = 237/552 (42%), Gaps = 63/552 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   KK VK A +SG V+G   + HG  ++   + 
Sbjct: 715  RSIPSVVDGLKPGQRKVLYTCFKRNV---KKDVKVAELSGYVLGMTAYQHGEQSLQQTII 771

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + + 
Sbjct: 772  GLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTYN 831

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V            +L 
Sbjct: 832  VD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIV-----------ANLK 879

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             LM     P  P      G TG   +    R     R +S I    GD E + +TE+P +
Sbjct: 880  RLM--AGEPLVPMEPWFRGFTGEVVSMGGERYKFSGR-ISQI----GDNE-VEITELPIR 931

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY-RYTS 332
                   +++ E+++ +++   I D +D +       +I+L    +   I   L  ++  
Sbjct: 932  SWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFKL 991

Query: 333  LQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
             +++ + N+VA +  G   +  ++  IL+ F + R ++  +R ++ L++ +     +   
Sbjct: 992  TKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTNQ 1051

Query: 391  AIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLIDDSSYTIGSDGTMYL 449
            A  V  + +   +I   P  +  R EL ++ +   + + D      +++  +  D     
Sbjct: 1052 ARFVQMIIDGKFVISKKPKAQLVR-ELKEKGFKPFAKVSDAA-AKGENAPVVEEDEDDDG 1109

Query: 450  SEVQTRA-----ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
             + Q  A     +L + L  LT    + +R ++     EI            L+ + K++
Sbjct: 1110 EDTQIAANSYDYLLGMPLWSLTKERVEKLRRQIGDKETEI----------DTLIKLSKED 1159

Query: 505  LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
            + +   +LD      + E    +EDE+   R     T S     +RV   +  A  +GGK
Sbjct: 1160 IWTA--DLDD----FLAEWKFQLEDEE---RRQTKRTKS----ARRVSTKLKTAATKGGK 1206

Query: 565  GRSGVVMRDEDF 576
             R      D DF
Sbjct: 1207 KRKAADDDDSDF 1218


>gi|329124305|gb|AEB72030.1| DNA topoisomerase IV subunit C [Aeromonas sp. 34(2011)]
          Length = 82

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKP  RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R 
Sbjct: 1   LKPDQRRIVYAMSELGLNASSKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPPA 126
            L++GQGN+G+ D DP +
Sbjct: 61  PLVDGQGNWGAPD-DPKS 77


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L + A  L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP+ +  +V      +I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRGMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVVRN-IVPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 147/356 (41%), Gaps = 47/356 (13%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +       K  K A+ SG V     YH HG  ++  
Sbjct: 661 LQRSIPSMVDGLKPGQRKILFSSFKRNF---VKEAKVAQFSGYVSEHSAYH-HGEQSLAS 716

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQD+  S  + L++  G FG+  + G   A+ RY   RL     FL        +
Sbjct: 717 TIIGMAQDFVGSNNINLLQPNGQFGTRNLGGKDHASARYIYTRLSPITRFLFSKDDDRLL 776

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+  N DG   EP       P VLVNG  GI  G ++ IP +N  ++V     ++D    
Sbjct: 777 DYL-NEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPNYNPRDIVANVRRLLDG--- 832

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGI--KNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
             DA++        P      G TG   K    +G        +  + +TS     + ++
Sbjct: 833 --DAMV--------PMDPWYRGFTGTIEKTVKESGVSYTACGIIEEVSETS-----LRIS 877

Query: 270 EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR----GASADV 322
           E+P   +  +    LE I+E   + +   I      SD     +++ L+      A  + 
Sbjct: 878 ELPIRRWTQDYKEFLESISEGNDKAKDPFIEGFTQHSDHSTVDIIVHLREEKLMAAKQEG 937

Query: 323 ILNQLYRYTSLQS----LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +L +    TS+ +    LF    V      PE+     IL+ F   R E   +R K
Sbjct: 938 LLKKFKLTTSISTSNMHLFDRKGVIKKYDTPEQ-----ILEDFFHLRLEFYEKRKK 988


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
            gallopavo]
          Length = 1688

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 154/352 (43%), Gaps = 40/352 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 800  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 855

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 856  VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKF 915

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 916  L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDG--LD 971

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N Y       V+           DR  + +TE+P
Sbjct: 972  PHPML-----PNYKNFKGTIQELG-QNQYVVSGEIFVV-----------DRNTVEITELP 1014

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     EK    I+D ++       + V+++     A      L+
Sbjct: 1015 VRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1073

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +   LQ+  + N + L    G   +  T+  ILK F   R      R ++L+
Sbjct: 1074 KVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKEWLV 1125


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 168/390 (43%), Gaps = 42/390 (10%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   K   K A++ G +     
Sbjct: 730  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSA 786

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 787  YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 845

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++
Sbjct: 846  SIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIN 904

Query: 201  GCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
                 ID  P + +    +  +G   P G         K+ Y T         +  I K 
Sbjct: 905  NIKKYIDKEPLVPMVPWYKDFKGRIEPNG---------KSGYET---------IGIINKI 946

Query: 260  SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KR 316
              D E + +TE+P +       E + EL+ +++   I D  D S  +     I++   K 
Sbjct: 947  --DDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDVCFTIKMDPIKL 1004

Query: 317  GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTK 374
              + +  L ++++  S  +L + NM   +   K +R+ + + ILK F   R      R  
Sbjct: 1005 KRAEEEGLEKVFKLKS--TLTTTNMTLFDPKLKLQRYASELDILKDFCFHRLNAYTDRKN 1062

Query: 375  YLLNKARDRAHVL---VGLAIAVANLDEVV 401
            YL++K      ++       +A+ N + VV
Sbjct: 1063 YLISKLEKEKRIISNKTKFILAIINGELVV 1092


>gi|308445273|gb|ADO32822.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+   Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L +    L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRYIFTKLSRFGRLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVVRN-LVPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 37/372 (9%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   K   K A++ G +     
Sbjct: 735  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSA 791

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 792  YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 850

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++
Sbjct: 851  SIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIE 909

Query: 201  GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                 I+      + L+ +I     P      GR  I++   TG  +I   G+ H     
Sbjct: 910  NIKRYINK-----EPLLPMI-----PWYKDFKGR--IESNGKTGYETI---GIIH----K 950

Query: 261  GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRG 317
             D E + + E+P +       E + EL+ +++   I D  D S  +     I++   K  
Sbjct: 951  IDDETLEINELPIKKWTQDYKEFLEELLTDEKHQLIVDYIDNSSHEDICFTIKMDPAKMK 1010

Query: 318  ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKY 375
             + +  L ++++  S  +L + NM   +   K +R+ T + ILK F   R +    R  Y
Sbjct: 1011 KAEEEGLEKVFKLKS--TLTTTNMTLFDPNLKLQRYSTELDILKDFCFHRLKAYENRKSY 1068

Query: 376  LLNKARDRAHVL 387
            L++K      ++
Sbjct: 1069 LISKLEKEKKII 1080


>gi|3282089|emb|CAA07512.1| topoisomerase II subunit A [Thermotoga neapolitana]
          Length = 139

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 55/184 (29%)

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RFP+S +R   GRN+ GV+ I L  GD+V+SM +V   + +                 
Sbjct: 1   IIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVVSMDVVPSEEGE----------------- 42

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              ILTV+EKGFGKRT    +R+  R G
Sbjct: 43  -----------------------------------ILTVTEKGFGKRTPVQLYRVQKRGG 67

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+R  ++S +N+ G +VAV  V  +++I++V+  G +IR+PV+EI +  R TKGV +  
Sbjct: 68  TGLR--NISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIE 125

Query: 885 TAKD 888
              D
Sbjct: 126 LGDD 129


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 170/388 (43%), Gaps = 39/388 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG  S++  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKSITYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+
Sbjct: 724  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCAS 782

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    +D++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 783  ARYIFTIMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWS 841

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  +N  E++     +I+  +    ++M        P     LGR      Y +  G 
Sbjct: 842  TKISNYNPREIMKNLRKMINGQE---PSVMH-------PWYKNFLGRM----EYVSD-GR 886

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESD 304
             +  G  +I+  SG+R  + ++E+P  V      E + E +    EK    I++ R+   
Sbjct: 887  YIQTG--NIQILSGNR--LEISELPVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHT 942

Query: 305  RQGYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVN-MVALNGYKP-ERF-TLIGILK 359
                R VI    G    +   +   YR   L +  S N M A +      RF T I ILK
Sbjct: 943  DTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILK 1002

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +   R E   RR  +L+ +   +A  L
Sbjct: 1003 EYYKLRREYYARRRDFLVGQLTAQADRL 1030


>gi|3152674|gb|AAC17115.1| topoisomerase IV subunit A [Shigella flexneri]
          Length = 79

 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+ +  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 1   KFKKSARTVGDVLGKYHPHGDSACYEPMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 59

Query: 128 ERYTECRLQKAAHFLLDDLG 147
            RYTE RL K +  LL +LG
Sbjct: 60  MRYTESRLSKYSELLLSELG 79


>gi|308445277|gb|ADO32824.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 154/352 (43%), Gaps = 40/352 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 734  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 789

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 790  VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKF 849

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 850  L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDG--LD 905

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N Y       V+           DR  + +TE+P
Sbjct: 906  PHPML-----PNYKNFKGTIQELG-QNQYVVSGEIFVV-----------DRNTVEITELP 948

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     EK    I+D ++       + V+++     A      L+
Sbjct: 949  VRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1007

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +   LQ+  + N + L    G   +  T+  ILK F   R      R ++L+
Sbjct: 1008 KVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKEWLV 1059


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 179/376 (47%), Gaps = 40/376 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  +   K  +K A
Sbjct: 806  INEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKL---KSEIKVA 861

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            +++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A R
Sbjct: 862  QLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGKDFSAAR 920

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y    L +    + + L     ++  + D    EP       P +LVNG  GI  G +TN
Sbjct: 921  YIFTELNEITRKIFNPLDDPLYNYVQD-DEQTVEPEWYLPVLPMILVNGAEGIGTGWSTN 979

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            IP++N  ++V     +++    +L  +    +G D   G +   ++G +    TGR    
Sbjct: 980  IPSYNPKDLVANIKRLMNGE--ELQEMTPWYKGWD---GDI--EQSGPQKYKITGR---- 1028

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
                  IE+  GD E + +TE+P +V   N    L  +A    EK    I D+ +E    
Sbjct: 1029 ------IEQV-GDNE-VDITELPVKVWTNNYKEFL--LAGFGTEKTPAWIKDM-EEHHTT 1077

Query: 307  GYRVVIELKRGASADVI-LNQLYRYTSLQSLFSVNMVALNGY-KPERFT-LIGILKAFVA 363
              + V++L        + +  + R+  + SL   NMVA +   + +++T ++ ILK F  
Sbjct: 1078 SIKFVVKLTDAEMQKSLRMGLMERFKLISSLSLGNMVAFDSMGRIKKYTDVLEILKEFYY 1137

Query: 364  FREEVVVRRTKYLLNK 379
             R E   +R  Y+++K
Sbjct: 1138 LRLEYYEKRKSYMVDK 1153


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 171/385 (44%), Gaps = 39/385 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG  S++  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKSITYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+
Sbjct: 724  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCAS 782

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    +D++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 783  ARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWS 841

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  +N  E+++    +I+  +        ++  P +      LGR      Y +  G 
Sbjct: 842  TKISNYNPREIMNNLRKMINGQE-------PVVMHPWYKN---FLGRI----EYVSD-GR 886

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESD 304
             V  G  +++   G+R +I  +E+P  V      E + E +    EK    +++ ++   
Sbjct: 887  YVQTG--NLQILHGNRLEI--SELPVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEYHT 942

Query: 305  RQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
                R VI     E +R  + +   +++++ T+  S   ++    N       T I ILK
Sbjct: 943  DTTVRFVISFAPGEFERIRAEEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILK 1002

Query: 360  AFVAFREEVVVRRTKYLLNKARDRA 384
             F   R E   RR  +L+ +   +A
Sbjct: 1003 EFYKLRREYYARRRDFLVGQLTAQA 1027


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 117/260 (45%), Gaps = 29/260 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R+I+F   +  +  + K V+ A    E    YH HG  ++   +  
Sbjct: 683 RSIPSVIDGLKPGQRKIIFSSFKRRLTRSIKVVQLAGYVSE-HAAYH-HGEQSLVQTIVG 740

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQ++  S  + L++  G FG+    G   AA RY   RL   A ++     +  VD++ 
Sbjct: 741 LAQNFVGSNNVPLLQQDGQFGTRLQGGKDHAAGRYIFTRLTNIARYIYHPSDEFVVDYKD 800

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           + DG   EP       P VLVNG  GI  G ATNIP ++  EV+D               
Sbjct: 801 D-DGLSVEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDN-------------- 845

Query: 216 LMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           LM ++RG +  P      G TG        RG  V  G +++         + +TE+P  
Sbjct: 846 LMRLLRGEEVQPMKPWYFGFTG--TIEEKERGKFVSTGCANVRPDG----VVQITELPIG 899

Query: 275 VNKAAMLEKIAELVREKRIV 294
                  +K  E +REK +V
Sbjct: 900 TWTQG-YKKFLEELREKEVV 918


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
            parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 172/389 (44%), Gaps = 40/389 (10%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   +   K A++ G +     
Sbjct: 724  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNECKVAQLVGYIAEHSA 780

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 781  YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 839

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  +++D
Sbjct: 840  SIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIID 898

Query: 201  GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                 I+      + L+     P  P      GR  I++   TG  +I I  ++ I    
Sbjct: 899  NIKRYINK-----EPLI-----PMVPWYKDFKGR--IESNGKTGYETIGI--INKI---- 940

Query: 261  GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRG 317
             D + + +TE+P +       E + EL+ +++   I D  D S  +     I++   K  
Sbjct: 941  -DNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLQ 999

Query: 318  ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKY 375
             + +  L ++++  S  +L + NM   +   K +R+ T + ILK F   R +    R  Y
Sbjct: 1000 KAEEEGLEKVFKLKS--TLTTTNMTLFDPNLKLQRYSTELDILKEFCYQRLKAYENRKSY 1057

Query: 376  LLNKARDRAHVL---VGLAIAVANLDEVV 401
            L++K      ++       +A+ N + +V
Sbjct: 1058 LISKLEKEKRIISNKTKFILAIVNNELIV 1086


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 169/390 (43%), Gaps = 42/390 (10%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   +   K A++ G +     
Sbjct: 729  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNECKVAQLVGYIAEHSA 785

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 786  YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 844

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++
Sbjct: 845  SIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIN 903

Query: 201  GCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
                 ID  P + +    +  +G   P G         K+ Y T         +  I K 
Sbjct: 904  NIKKYIDKEPLVPMVPWYKDFKGRIEPNG---------KSGYET---------IGIINKI 945

Query: 260  SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KR 316
              D E + +TE+P +       E + EL+ +++   I D  D S  +     I++   K 
Sbjct: 946  --DDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDVCFTIKMDPTKL 1003

Query: 317  GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTK 374
              + +  L ++++  S  +L + NM   +   K +R+ + + ILK F   R      R  
Sbjct: 1004 KRAEEEGLEKVFKLKS--TLTTTNMTLFDPNLKLQRYASELDILKDFCFHRLNAYTDRKN 1061

Query: 375  YLLNKARDRAHVLVGLA---IAVANLDEVV 401
            YL++K      ++   A   +A+ N + VV
Sbjct: 1062 YLISKLEKEKRIISNKAKFILAIINGELVV 1091


>gi|315286960|ref|ZP_07872182.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
 gi|313630887|gb|EFR98581.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
          Length = 75

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 54/73 (73%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
          E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70 KYVKCARISGEVM 82
           Y K ARI GEV+
Sbjct: 63 AYKKSARIVGEVI 75


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 160/363 (44%), Gaps = 50/363 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++L+   +  +   K  +K A+++G +     YH HG+ ++   +
Sbjct: 719  RSIPHIMDGFKPSQRKVLYACFKKKL---KAEIKVAQLAGYIGEHSAYH-HGDMSLNGTI 774

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAH--FLLDDLGKDTV 151
              MAQ +  S  L L+   G FG+  + G   A+ RY   RL+K A   F  DD   D +
Sbjct: 775  IGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFHPDD---DAL 831

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
                N DG   EP       P VLVNG  GI  G ++ I  H+  EV+     +I+  + 
Sbjct: 832  LNYLNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEP 891

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-GSIVIRGVSHIEKTSGDREQIVVTE 270
            +L         P F       G TG   A +  R GS ++ G   IE+T GD   +++TE
Sbjct: 892  EL-------MHPHFA------GYTGEITAESGSREGSYIVEG--KIERT-GDT-TLLITE 934

Query: 271  IP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI---- 323
            +P   +  +    LE +  +  +K   +I+D ++          +     AS D I    
Sbjct: 935  LPIGKWTQDYKGFLEGLM-IGTDKSPSEISDFKENHT----DTTVSFTVTASKDAIDKFE 989

Query: 324  -----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
                 L   ++ ++  S  ++ +   NG   +    + IL+ F   R E  V+R   LL 
Sbjct: 990  KEKGGLVGKFKLSTTISTKNMTLFDTNGKIHKYKASVDILRTFFHHRLEYYVKRKDMLLE 1049

Query: 379  KAR 381
            K R
Sbjct: 1050 KMR 1052


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 20/213 (9%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +       K  K ++ SG V     YH HG  ++  
Sbjct: 690 LQRSIPSMLDGLKPGQRKILFCAFKRNF---VKEAKVSQFSGYVSEHSAYH-HGEQSLSS 745

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQD+  S  + L++  G FG+  + G   A+ RY   RL   A FL      DT+
Sbjct: 746 TIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHASSRYIYTRLSPIARFLFPK-EDDTI 804

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI-DNPD 210
               N DG + EP       P VL+NG  GI  G ++ +P +N  ++V     ++ D P 
Sbjct: 805 HDYLNEDGQYIEPTWYVPIVPMVLINGSEGIGTGWSSYVPNYNPRDLVANVRRLLNDEPM 864

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             +D   +  +G         + +T  K A AT
Sbjct: 865 EPMDPWYKGFKG--------TIEKTATKEAGAT 889


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 172/389 (44%), Gaps = 40/389 (10%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   +   K A++ G +     
Sbjct: 724  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNECKVAQLVGYIAEHSA 780

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 781  YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 839

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  +++D
Sbjct: 840  SIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIID 898

Query: 201  GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                 I+      + L+     P  P      GR  I++   TG  +I I  ++ I    
Sbjct: 899  NIKRYINK-----EPLI-----PMVPWYKDFKGR--IESNGKTGYETIGI--INKI---- 940

Query: 261  GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRG 317
             D + + +TE+P +       E + EL+ +++   I D  D S  +     I++   K  
Sbjct: 941  -DNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLQ 999

Query: 318  ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKY 375
             + +  L ++++  S  +L + NM   +   K +R+ T + ILK F   R +    R  Y
Sbjct: 1000 KAEEEGLEKVFKLKS--TLTTTNMTLFDPNLKLQRYSTELDILKEFCYQRLKAYENRKSY 1057

Query: 376  LLNKARDRAHVL---VGLAIAVANLDEVV 401
            L++K      ++       +A+ N + +V
Sbjct: 1058 LISKLEKEKRIISNKTKFILAIVNNELIV 1086


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 154/352 (43%), Gaps = 40/352 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 739  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 794

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 795  VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKF 854

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 855  L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDG--LD 910

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N Y       V+           DR  + +TE+P
Sbjct: 911  PHPML-----PNYKNFRGTIQELG-QNQYVVSGEIFVV-----------DRNTVEITELP 953

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     EK    I+D ++       + V+++     A      L+
Sbjct: 954  VRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1012

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +   LQ+  + N + L    G   +  T+  ILK F   R      R ++L+
Sbjct: 1013 KVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKEWLV 1064


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 162/351 (46%), Gaps = 36/351 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG  ++   + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTCFKRNL---KKDMKVVELAGHVSGMTAYQHGETSLQQTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  + +   +  + + 
Sbjct: 862  GLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFNQQDEPLLTYN 921

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +++IP +N  ++V     ++D  +   +
Sbjct: 922  ED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEP--E 978

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG                N   T +G    +    I + + D+E + +TE+P +
Sbjct: 979  PMQPWFRG---------------FNGEVTPQGPDRYKFSGRIHELN-DKE-VEITELPIR 1021

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKR---GASADVILNQLYRY 330
                   +K+ ++++ EK    I D +D +       VI++      A+ D  L + ++ 
Sbjct: 1022 TWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKAAVDEGLEEKFKL 1081

Query: 331  TSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +  +++ + N+VA +  G   +  T+  ILK F A R +   RR ++ L++
Sbjct: 1082 S--RTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQHQLSE 1130


>gi|46191315|ref|ZP_00206761.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Bifidobacterium longum
          DJO10A]
          Length = 115

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 50/73 (68%)

Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
          I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +M +  ++ Y+K A
Sbjct: 21 IVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIVYQMGEMNLTPDRPYMKSA 80

Query: 76 RISGEVMGKYHPH 88
          R+ GEVMGK HP 
Sbjct: 81 RVVGEVMGKLHPQ 93


>gi|89243025|gb|ABD64768.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 93

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 9/98 (9%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VIL RAIP + DGLKPV RRIL  +  M    + K  K A ++G+ M  YHPHG+A I +
Sbjct: 4   VILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAPITE 59

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
           AL  MA     R  L++ QGNFG++  GDP AA RY E
Sbjct: 60  ALVNMAN----RGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|89243027|gb|ABD64769.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 94

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 61/98 (62%), Gaps = 9/98 (9%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VIL RAIP + DGLKPV RRIL  +  M    + K  K A ++G+ M  YHPHG+A I +
Sbjct: 4   VILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAPITE 59

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
           AL  MA     R  L++ QGNFG++  GDP AA RY E
Sbjct: 60  ALVNMAN----RGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K ++ +S +D   N  L +  N    R+IP L DGLKP  R++LF   +     +KK +K
Sbjct: 677 KEVSDISYSD-FVNKELIHFSNADNIRSIPSLMDGLKPGQRKVLFTCFKRN---DKKDIK 732

Query: 74  CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A+++G V  M  YH HG A++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 733 VAQLAGSVAEMSAYH-HGEASLMGTIINLAQNFVGSNNINLLQPIGQFGTRLHGGKDSAS 791

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGM 186
            RY    L   A ++ D   +  ++++  ++ + + EP       P VLVNG  GI  G 
Sbjct: 792 ARYIFTMLSPVARYMFDQKDEPLLEYQ--FEDNLRIEPDWYAPLIPVVLVNGAEGIGTGY 849

Query: 187 ATNIPTHNLGEVVD 200
           +T IP +N  E+VD
Sbjct: 850 STRIPNYNPREIVD 863


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 160/354 (45%), Gaps = 42/354 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   KK +K   ++G V G   + HG+ ++   + 
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTCFKRNV---KKDMKVVELAGHVSGMTAYQHGDTSLQQTIV 861

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 862  GLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFHQADEPLLTYN 921

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +++IP +N  EVV     ++D  +   +
Sbjct: 922  ED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEEVVANLKRMMDGEEP--E 978

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-----VSHIEKTSGDREQIVVT 269
             +    RG                      +G +  +G      S + K   D+E + +T
Sbjct: 979  PMQPWFRG---------------------FKGEVTQQGPDRYKFSGLIKEVSDKE-VEIT 1016

Query: 270  EIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIEL-KRGASADVILNQL 327
            E+P +       +K+ ++++ EK    I D +D +       VI++ ++   A V     
Sbjct: 1017 ELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKAAVSEGLE 1076

Query: 328  YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             ++   +++ + N+VA +  G   +  T+  ILK F A R +   RR ++ L++
Sbjct: 1077 EKFKLSRTIATSNLVAFDPEGRITKYATVSDILKEFYAVRLKYYERRKQHQLSE 1130


>gi|1498009|gb|AAB06321.1| DNA gyrase subunit A [Campylobacter sp.]
          Length = 59

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   ++GQGNFGS+DGD
Sbjct: 5   YKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGD 57


>gi|48425718|pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
          Length = 312

 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 128/258 (49%), Gaps = 12/258 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D + +E++VV ++  G++KR+  + Y+ Q  GGKG S   + D D +     V+TH  + 
Sbjct: 3   DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLF 62

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G +Y    + +   S  ++G+ +  +++L   E I TI      +   ++ Y++ 
Sbjct: 63  MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLL 119

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G + R + +DF  +   G I +KL+ +D + S E   ++  ++  +K G    F  
Sbjct: 120 TTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNS 179

Query: 711 SAIRVFAGRNSVGVRGISLAKGD---QVISMA----IVLHADADYDERICYMKHMSAQRR 763
             +R+   R + GV G+ L +GD   +V+S+     +++ ++  Y +R+  M  +S  +R
Sbjct: 180 RDVRL-TNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRL-NMSKISELKR 237

Query: 764 LISGDTEEITSLKNDSSV 781
             +G T    S K   SV
Sbjct: 238 GATGYTSYKKSDKKAGSV 255



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +EI   V    VN +D
Sbjct: 3   DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 59

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879
            + ++S++G L  +   EI+ +SRA+KG
Sbjct: 60  YLFMISNEGKLYLINAYEIKDSSRASKG 87


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R++L+   +  +  +KK V+ A    E    YH HG A++   +  
Sbjct: 816 RSIPSVIDGLKPGQRKVLYACFKRNLTKDKKVVELAGYVSEHTA-YH-HGEASLQQTIIG 873

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQD+  S  + ++E  GNFGS    G   A+ RYT  RL   A  +   L  D    + 
Sbjct: 874 LAQDFVGSNNINVLEPSGNFGSRLAGGSDAASPRYTFTRLAPFAKKIFSPL--DEACLKH 931

Query: 156 NY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
            Y DG   EP V     P VLVNG  GI  G +T IP ++  ++V
Sbjct: 932 QYEDGKRIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIV 976


>gi|69250183|ref|ZP_00605119.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
 gi|68193991|gb|EAN08551.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
          Length = 202

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 34/230 (14%)

Query: 324 LNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           +N L+  T L+  +  ++NM+ L+G +P    L+ IL  ++ FR + V RR  Y L K  
Sbjct: 1   MNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 59

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R H+L GL +A  N+DEV+ IIR    P+ A   LM R                     
Sbjct: 60  KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------------- 95

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                  L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++
Sbjct: 96  -----FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 150

Query: 502 KQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           K+EL +        RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 151 KKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 200


>gi|259493813|gb|ACW82747.1| DNA topoisomerase IV subunit A [Vibrio cholerae]
          Length = 83

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 3/83 (3%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP--AAERYTECRLQKAAHFL 142
            DP   AA RYTE +L K A  L
Sbjct: 62  -DPKSFAAMRYTEAKLSKFAEIL 83


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 42/359 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++L+   +  +   K  +K A+++G +     YH HG+ ++   +
Sbjct: 691  RSIPHIMDGFKPSQRKVLYACFKKKL---KAEIKVAQLAGYIGEHSAYH-HGDMSLNGTI 746

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAH--FLLDDLGKDTV 151
              MAQ +  S  L L+   G FG+  + G   A+ RY   RL+K A   F  DD   D +
Sbjct: 747  IGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFHPDD---DAL 803

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
                N DG   EP       P VLVNG  GI  G ++ I  H+  EV+     +I+  + 
Sbjct: 804  LNYLNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEP 863

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-GSIVIRGVSHIEKTSGDREQIVVTE 270
            +L         P F       G TG   A +  R GS ++ G   IE+T GD   +++TE
Sbjct: 864  EL-------MHPHFA------GFTGEITAESGSREGSYIVEG--KIERT-GDT-TLLITE 906

Query: 271  IP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI-----ELKRGASADV 322
            +P   +  N  A LE +     +K   +I+D ++          +      + +      
Sbjct: 907  LPVGKWTQNYKAFLEGLMSGT-DKDPSEISDFKENHTDTTVSFTVTATEENINKFEYGKG 965

Query: 323  ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
             L + ++ ++  S  ++++ + +G   +    + IL+ F   R E  V+R   LL K R
Sbjct: 966  GLLKKFKLSTTMSTANMHLFSEDGKIVKYNGSVDILRTFFHHRLEYYVKRKDMLLEKLR 1024


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1432

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 85/176 (48%), Gaps = 27/176 (15%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +  V    K +K A++ G V  M  YH HG  ++  
Sbjct: 698 LQRSIPSMVDGLKPGQRKILFTAFKKIV---VKEMKVAQLVGYVSSMSAYH-HGEQSLAS 753

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERY--------TECRLQKAAHFLL 143
           A+  MAQD+  S  + L++  G FG+ +  G   A+ RY        T     K  H LL
Sbjct: 754 AIIGMAQDYVGSNNINLLQPNGQFGTRNSGGKDAASARYIFTILSPVTRILFPKDDHILL 813

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D L         N DG   EP       P VLVNG  GI  G +T IP +N  E+V
Sbjct: 814 DYL---------NEDGQSIEPTWYMPIIPTVLVNGSEGIGTGWSTFIPNYNPREIV 860


>gi|50079973|gb|AAT69559.1| DNA gyrase [Acinetobacter baumannii]
          Length = 52

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           GKYHPH ++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R
Sbjct: 1   GKYHPHCDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVR 52


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 163/396 (41%), Gaps = 50/396 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LFG  +  +      +K  + SG V     YH HG  ++ D 
Sbjct: 708  ARSIPCVVDGLKPSQRKVLFGAFKRKL---TSEIKVVQFSGYVSEHAAYH-HGEQSLNDT 763

Query: 97   LARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQD+  S  + L    G FGS  + G   A+ RY    L      +     K+  D
Sbjct: 764  IIGMAQDFVGSNNINLFVPAGQFGSRLLGGKDAASPRYIYTYLSPITRLIF----KEDDD 819

Query: 153  FRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
               NY   +G   EP       P VLVNG  GI  G +T IP +N  E+ +  +A ++N 
Sbjct: 820  LLCNYLVEEGQSIEPEFYLPIIPMVLVNGAEGIGTGYSTKIPNYNPVEIANYIIAKLNNE 879

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                       + P+        G TG  + Y   +G  +IRG      T  D    V+T
Sbjct: 880  -----------KPPEL--HPWWRGFTG--DIYKRPKG-YLIRG----RITKVDDLTYVIT 919

Query: 270  EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            E+P   +  +   +L ++  ++ EK+   IAD ++          + L    +  +    
Sbjct: 920  ELPIGRWTQDYKQILTEM--MLPEKKAPVIADFKENHTDTTVHFTVMLTPEQAQALQGQD 977

Query: 327  LYRYTSLQSLFSV---NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            LY++  L++  +    N+ +  G      +   I+  F  FR      R  +LL K    
Sbjct: 978  LYKFFKLEAAITTSNFNLFSSTGQITHYASPQHIIDEFFEFRLPYYQERKDFLLAKFEKE 1037

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
               L  +   +  + E   II   P     R+++MQ
Sbjct: 1038 IRRLSNMTRFILEVVEGKLIINNRP-----RKDIMQ 1068


>gi|297374170|emb|CBL88443.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 42/357 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DG KP  R++++   +  +  +KK V+ A    E    YH HG  ++   +  
Sbjct: 786  RSIPSVLDGFKPGQRKVIYACFKRNLIKDKKVVELAGYVSEQTA-YH-HGEQSLQQTIIG 843

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RYT  RL   A  +   +  D  +   
Sbjct: 844  LAQNFVGSNNINCLEPSGNFGSRLAGGSDAASPRYTFTRLSPFARKIFHPM--DEPNLLH 901

Query: 156  NY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD------GCVAVIDN 208
            +Y DG   EP+V     P VLVNG  GI  G ++NIP ++  ++V       G +   D 
Sbjct: 902  HYEDGKKIEPMVYAPILPMVLVNGADGIGTGWSSNIPNYHPADIVQNLRRRMGRLDENDT 961

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
             +   + +M   RG                   A G       GV++  +   +  +IV+
Sbjct: 962  EEKPFETMMPWFRG-------------WKGTPEAAGPDRYKFNGVAYANEQKDN--EIVI 1006

Query: 269  TEIPYQV---NKAAMLEK-IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            TE+P +V   +  A LEK I+  +    I D  +  D S    + + ++ K       ++
Sbjct: 1007 TELPIRVWTDDFKAKLEKVISGELGPSWIKDYKEFNDHSTVH-FEIAVDDKHMGK---VM 1062

Query: 325  NQ--LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +  L R+   + + + N+VA +  G   +   +  IL+ F  +R ++   R K+ L
Sbjct: 1063 EEGILERFKLTKQVATSNLVAFDTSGRIRKYEKVEEILEEFYQYRLDMYTDRKKHWL 1119


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 1]
          Length = 1083

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 144/316 (45%), Gaps = 50/316 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP+L DGLK   R+IL+   +  +      +K A+ SG V     YH HG +++  A+
Sbjct: 664 RSIPNLMDGLKVSQRKILYSAFKKNLV---SEIKVAQFSGYVSEHSGYH-HGESSLNGAI 719

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQ +    ++ +L+  GQ  FG+    G   A+ERY   +L K    +     K   
Sbjct: 720 VNMAQTFVGSNNINVLMPNGQ--FGTRLQGGKDSASERYIFTQLNKITRMIF----KKED 773

Query: 152 DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D   NY   DG+  EPV      P +LVNG  GI  G +T+IP  N  E++D  +  +++
Sbjct: 774 DVILNYLNDDGTPVEPVFYAPILPMILVNGTKGIGTGFSTDIPCFNPKELIDYILKKLED 833

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P+   D +      P +      + +   +     G+ SI               + I++
Sbjct: 834 PNHIRDFI------PYYKHFTGTIEKEDSRRFITKGKYSI-------------QNKTIII 874

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV---IELKRGASADVILN 325
           TE+P  V     +  +     EK IVD   L+D SD+    V+   + LK     + IL 
Sbjct: 875 TELPIGVWNEDYITHL-----EKCIVD-NKLKDYSDQSTDSVIYFKLTLKENMDEEAIL- 927

Query: 326 QLYRYTSLQSLFSVNM 341
           + ++ T+  S+ ++N+
Sbjct: 928 KTFKLTTTLSINNMNL 943


>gi|320089090|emb|CBY98845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 231

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 77/111 (69%), Gaps = 4/111 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    V+D DQI+++
Sbjct: 94  EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAVQVDDCDQIMMI 151

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+ E
Sbjct: 152 TDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDEE 200



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 94/188 (50%), Gaps = 23/188 (12%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF 
Sbjct: 1   MATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQR 762
             A+R   GR + GVRGI LA  D+V+S+       AI+      Y +R    ++ +  R
Sbjct: 61  EDAVRAM-GRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSR 119

Query: 763 RLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                 T+ + S+K    + SV G +  + C +       I+ +++ G   RT   +  +
Sbjct: 120 A-----TQGVISIKVTERNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISV 167

Query: 820 SNRSGKGI 827
             R+ +G+
Sbjct: 168 VGRNTQGV 175


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 172/388 (44%), Gaps = 39/388 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG  S++  D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKSITYADFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+
Sbjct: 724  VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCAS 782

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    +D++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 783  ARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAEGIGTGWS 841

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T I  +N  E+++    +I+  +        ++  P +      LGR      Y +  G 
Sbjct: 842  TKISNYNPREIMNNLRKMINGQE-------PVVMHPWYKN---FLGRI----EYVSD-GR 886

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESD 304
             +  G  +++   G+R  + ++E+P  V      E + E +    EK    +++ ++   
Sbjct: 887  YIQTG--NLQILHGNR--LEISELPVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEYHT 942

Query: 305  RQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
                R VI     E +R  + +   +++++ T+  S   ++    N       T I ILK
Sbjct: 943  DTTVRFVISFAPGEFERIRAEEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILK 1002

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVL 387
             F   R E   RR  +L+ +   +A  L
Sbjct: 1003 EFYKLRREYYARRRDFLVGQLTAQADRL 1030


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 209/478 (43%), Gaps = 61/478 (12%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  +S TD +    + +++   + R+IP + DGLKP  R++L+ M +  V   +K  K  
Sbjct: 782  VEKISYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNV---RKDAKVV 837

Query: 76   RISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
             + G V G   + HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ RY
Sbjct: 838  ELGGYVSGMTGYQHGEVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASARY 897

Query: 131  TECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
               RL   A  +     D L K  VD     DG   EP V     P VL+NG  GI  G 
Sbjct: 898  IHTRLSPFARRIFSTADDPLLKHNVD-----DGKIIEPEVFVPVVPLVLINGADGIGTGW 952

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            +T+IP  N  ++VD    ++D               P  P      G TG   A A  R 
Sbjct: 953  STSIPNFNPEDIVDNLKRLMDGE-------------PVVPMKPWFRGFTGEVTA-AGDRY 998

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDR 305
                   S I K +GD E + +TE+P +       +K+ E+++ EK    I D +D +  
Sbjct: 999  KF-----SGIIKQTGDYE-VEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNTH 1052

Query: 306  QGYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFV 362
                 +I++        + + L  R+   +++ + NMVA +  G   +  T   IL+AF 
Sbjct: 1053 SKVHFIIQMDEKHMKKAVEDGLEERFKLSRTITTSNMVAFDAEGRITKYNTAEDILEAFF 1112

Query: 363  AFREEVVVRRTKYLL-----------NKARDRAHVLVG-LAIA---VANLDEVVRIIRFS 407
            A R     +R +++L           N+AR    ++ G L IA    A L + ++   F 
Sbjct: 1113 AVRIRFYEKRKQFMLAQLHKELEKLTNQARFVQMIIDGKLVIAKKPKAKLMQELKEKAFK 1172

Query: 408  PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            P P+    +  +   +   +++  D  ++     GSDG  YL  +   ++ + R+A+L
Sbjct: 1173 PFPKGV--DAAKEGEDEPTVEN--DESEEEEKKSGSDGYDYLLGMALWSLTQERVAKL 1226


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 166/403 (41%), Gaps = 64/403 (15%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP L DGLKP  R++LF   +     +K+ VK A++
Sbjct: 694  TYLTYNDFINKELVLFSNSDNERSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 750

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 751  AGSVAEMSSYH-HGETSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 809

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L   A      L  + + F  + D    EP       P VL+NG  GI  G +  IP
Sbjct: 810  FTMLSPLARLAFPVLDDNVLKFLFD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIP 868

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             +++ EVV+    ++D      D  + ++  P++      +   G       G  SI+  
Sbjct: 869  NYDVREVVNNIRRMLDG-----DEPLPMM--PNYKNFKGTIDSVGQNQYVVNGEVSII-- 919

Query: 252  GVSHIEKTSGDREQIVVTEIPY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
                      D   I ++E+P     QV K  +LE +     EK    I D ++      
Sbjct: 920  ----------DSTTIEISELPVRTWTQVYKEQVLEPMLNGT-EKTPPLITDYKEYHTDTT 968

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQ-SLFSVNMVALNGYKPERFTLIGILKAFVA--- 363
             R VI++     A+     L++   LQ SL   NMV         F  IG LK +     
Sbjct: 969  VRFVIKMSEQKLAEAEAAGLHKVFKLQSSLACPNMVL--------FDHIGCLKKYETAED 1020

Query: 364  -FREEVVVRRTKYLLNKARDRAHVLVG-LAIAVANLDEVVRII 404
              RE   +R   Y L     R   LVG L    A L+   R I
Sbjct: 1021 ILREFYELRLRYYSL-----RKDWLVGMLGAESAKLNNQARFI 1058


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 1236

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 36/271 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RAIP   DGLKP  R+IL+ M++     + +  K A++SG +     +H HG A++ + 
Sbjct: 682 ARAIPHCVDGLKPSQRKILWAMLR---RHSSEASKVAQLSGYISEASAFH-HGEASLQET 737

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G   AA RY   +L + A  L  +     
Sbjct: 738 IVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPL 795

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+  + +G+F EP       P +L NG  GI  G AT IP  +  +V     A+I+   
Sbjct: 796 LDYM-DEEGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPAFHPLDVSAAVRAMING-- 852

Query: 211 IDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++  +++R    P      G  R G  N + A G+ +    G  HI           
Sbjct: 853 ---ESAKQVMRNL-VPWAVGFQGTVRRGPDNEFIAVGKYTAHPNGRFHI----------- 897

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +EIP+  +  A    I+ L     +  IAD
Sbjct: 898 -SEIPWMTSIEAFRLHISSLASADVVQRIAD 927


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 169/389 (43%), Gaps = 40/389 (10%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
           N  L Y       R+IP++ DG KP  R++L+G  +  +   +   K A++ G +     
Sbjct: 216 NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNECKVAQLVGYIAEHSA 272

Query: 85  YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
           YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +  
Sbjct: 273 YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTR 331

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++
Sbjct: 332 SIFNEFDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIN 390

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                ID   +           P  P      GR  I++   +G  +I I  ++ I    
Sbjct: 391 NIKKYIDKEPL----------VPMVPWYKDFKGR--IESNGKSGYETIGI--INKI---- 432

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRG 317
            D E + +TE+P +       E + EL+ +++   I D  D S  +     I++   K  
Sbjct: 433 -DDETLEITELPIKRWTQDYKEFLEELLTDEKNQLILDYIDNSSHEDVCFTIKMDPVKLK 491

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKY 375
            + +  L ++++  S  +L + NM   +   K +R+ + + ILK F   R      R  Y
Sbjct: 492 KAEEEGLEKVFKLKS--TLTTTNMTLFDSNLKLQRYASELDILKDFCFHRLNAYNERKSY 549

Query: 376 LLNKARDRAHVL---VGLAIAVANLDEVV 401
           L++K      ++       +A+ N + VV
Sbjct: 550 LISKLEKEKRIISNKTKFILAIINGELVV 578


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 155/353 (43%), Gaps = 45/353 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+IL+G  +  +   K  +K A+++  V  +  YH HG  ++   +
Sbjct: 769  RSIPSMLDGLKPGQRKILYGCFKRKL---KNEIKVAQLAAYVADVSSYH-HGEQSLVQTI 824

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L++  G FGS    G   AA RY    L +    + ++     +++
Sbjct: 825  IAMAQNFVGSNNINLLKPNGAFGSRATGGKDAAAARYIFTELNEITRTIFNEADDPLLNY 884

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + D S  EP       P +LVNG  GI  G +TNIP++N  ++V              
Sbjct: 885  LQD-DESTVEPQWYLPVLPMILVNGADGIGTGWSTNIPSYNPLDIVAN------------ 931

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ-----IVV 268
              L  ++RG              +   Y    G I   G     K SG  EQ     I +
Sbjct: 932  --LRRLMRGEPMEE---------MNPWYKGWYGDIEKVGPQKF-KISGRIEQIDDNTIEI 979

Query: 269  TEIPYQVNKAAMLE-KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI-LNQ 326
            +E+P +     + E  +A L  EK +  I D+ +E      R V++L     A  + +  
Sbjct: 980  SEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDM-EEQHTTSIRFVVKLSDAEMAKALSVGL 1038

Query: 327  LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            L ++  + ++   NMVA +  G   +   ++ I+K F   R E   +R  ++L
Sbjct: 1039 LEKFKLVSTISLANMVAFDPHGRIKKYLDVLDIVKDFYFVRLEYYEKRKNHML 1091


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
           topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 15/200 (7%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YH 86
           + ++A N+   R+IP L DGLKP  R+ILF   +  +      +K +++SG V  +  YH
Sbjct: 800 HYSWAANL---RSIPSLIDGLKPGQRKILFASFKRRL---TNEIKVSQLSGYVAEQTSYH 853

Query: 87  PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFL 142
            HG  ++   + +MA ++  S  L L+   G FG+    G   A+ RY   +L+  A +L
Sbjct: 854 -HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYIFTKLEPVARYL 912

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
            ++L    +++      S Q P       P +LVNG  GI VGM+T+IP  +  +++D  
Sbjct: 913 FNELDDPLLNYLEEEGESIQ-PDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQL 971

Query: 203 VAVIDNPDIDLDALMEIIRG 222
           +  ++N  + L  L+   RG
Sbjct: 972 MLRLNN-QVALKKLIPWYRG 990


>gi|312184024|gb|ADQ42775.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 72

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 46/60 (76%)

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             D+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL DL KDTVD+  NYDGS
Sbjct: 10  GSDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEDNYDGS 69


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 163/360 (45%), Gaps = 38/360 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   +K +K   ++G V G   + HG+ ++   + 
Sbjct: 701  RSIPSVVDGLKPGQRKVLYTCFKRNV---RKDIKVVELAGYVSGMTAYQHGDVSLQQTIV 757

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 758  GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLLTYN 817

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P VL+NG  GI  G +T+IP +N  ++V     ++D     L 
Sbjct: 818  VD-DGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGE--PLV 874

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG  F    V LG    K    +GR S V           G+ E + +TE+P +
Sbjct: 875  PMQPWFRG--FTGEVVSLGGERYK---FSGRISQV-----------GENE-VEITELPIR 917

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +++ E+++ +++   I D +D +       VI+L    +A  I   L  ++  
Sbjct: 918  CWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKL 977

Query: 333  LQSLFSVNMVALNGYKPE-RFTLI----GILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +++ + N+VA +   PE R T       IL+ F + R +   +R   L +  ++R   L
Sbjct: 978  SKTIATSNLVAFD---PEGRITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKL 1034


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
           [Crithidia fasciculata]
          Length = 1239

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 138/294 (46%), Gaps = 43/294 (14%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I D +    + +A+ V   RAIP   DGLKP  R+IL+ M++     + +  K A++S
Sbjct: 663 LTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWAMLK---RHSSEAAKVAQLS 718

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERY 130
           G +  +  +H HG A++ + + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY
Sbjct: 719 GYISEVSSFH-HGEASLQETIVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRY 775

Query: 131 TECRLQKAAHFLL---DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
              +L + A  L    DD   D +D     +G+  EP       P +L NG  GI  G A
Sbjct: 776 IFTKLSRFARLLFPEDDDPLLDYID----EEGTMVEPNHYVPILPLLLCNGAVGIGFGFA 831

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG--RTGIKNAY-ATG 244
           TNIP+ +  +V     A+I+      ++  +++R    P      G  R G +  Y A G
Sbjct: 832 TNIPSFHPLDVSAAVRAMING-----ESAKQVVRNL-VPWAVGFQGTVRRGPEKEYIAVG 885

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + +    G  H            V+E+P+  +  A    I+ L     +  IAD
Sbjct: 886 KYTAHRNGRLH------------VSELPWMTSIEAFRSHISSLASSDVVQRIAD 927


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 19/248 (7%)

Query: 5   IISSDEEE---EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++SSD  +   +  I  +S  D +    + Y+      R+IP + DGLKP  R+IL+   
Sbjct: 754 LLSSDTTQLSVDHSIKELSFDDFINKELIHYSW-AANHRSIPSVMDGLKPGQRKILYAAF 812

Query: 62  QMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
           +  +      +K A+ SG V     YH HG  ++   + +MAQD+  S  + L+   G F
Sbjct: 813 KRKLT---SEIKVAQFSGYVAEHTAYH-HGEQSLSSTIVKMAQDFVGSNNIPLLTSGGQF 868

Query: 118 GS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           G+    GD  A+ RY   +L      + +DL  D + +    +G   +P       P +L
Sbjct: 869 GTRLQGGDDSASPRYIFTKLNSITRLIFNDLDDDLLKYLEE-EGEMIQPNYYVPILPMIL 927

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GI VGM+ ++P ++  +++D  + +++N    + AL+   RG    TG ++ G  
Sbjct: 928 VNGSDGIGVGMSNSVPLYSPIDLIDYLLNLLNNQK-QMKALVPWYRG---FTGTIVRGSN 983

Query: 236 GIKNAYAT 243
            +  ++ T
Sbjct: 984 AVNGSFKT 991


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 150/354 (42%), Gaps = 49/354 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWN-KKYVKCARISGEVMGKY-HPHGNAAIYDAL 97
            R++P L DGLK   R+++FG+ Q    WN K  +K A++   V  K  + HG   ++D +
Sbjct: 711  RSLPHLIDGLKESQRKVIFGLKQ----WNGKNNIKVAQLGAFVAQKTDYKHGEQNLFDTI 766

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ +  +  + L+E  G FG+    G   A+ RY           +L+ + +   D 
Sbjct: 767  IKMAQTFVGANNIPLLEEDGQFGTRLSGGKDAASPRYIFVNQPP----ILNKIFRPEDDP 822

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
              NY  DG   EPV      P + +NG  G+  G + NIP  N  E++DG    I+    
Sbjct: 823  ILNYTLDG---EPVFYAPVIPLICINGSVGVGTGFSCNIPMFNPSEIIDGLKQWIN---- 875

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                + E      F       G TG       G G  +  G    E ++    Q  V+E+
Sbjct: 876  ----MREQGEKYVFKYKPWYKGFTG--KIEKNGSGRYISYGTLSNEASNNGMYQYTVSEL 929

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL---- 327
            P  +      +++ +  RE  ++   D   E         +  K  +  ++ +  L    
Sbjct: 930  PINM-WTDKFKEMCDQYRESNLIKTCDNYSEV------TTVNFKISSEHELTIENLKLRS 982

Query: 328  YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            Y +TS       NMV  +  G   +  TL GI++ F   R ++  +R +Y+L K
Sbjct: 983  YIHTS-------NMVMFDHEGKIHKYETLNGIMQRFCKERIKIYEKRRQYMLQK 1029


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 163/360 (45%), Gaps = 38/360 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   +K +K   ++G V G   + HG+ ++   + 
Sbjct: 878  RSIPSVVDGLKPGQRKVLYTCFKRNV---RKDIKVVELAGYVSGMTAYQHGDVSLQQTIV 934

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + + 
Sbjct: 935  GLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLLTYN 994

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P VL+NG  GI  G +T+IP +N  ++V     ++D     L 
Sbjct: 995  VD-DGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGE--PLV 1051

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG  F    V LG    K    +GR S V           G+ E + +TE+P +
Sbjct: 1052 PMQPWFRG--FTGEVVSLGGERYK---FSGRISQV-----------GENE-VEITELPIR 1094

Query: 275  VNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQL-YRYTS 332
                   +++ E+++ +++   I D +D +       VI+L    +A  I   L  ++  
Sbjct: 1095 CWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFKL 1154

Query: 333  LQSLFSVNMVALNGYKPE-RFTLI----GILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +++ + N+VA +   PE R T       IL+ F + R +   +R   L +  ++R   L
Sbjct: 1155 SKTIATSNLVAFD---PEGRITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKL 1211


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 18/203 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K   +VS  D   N  L    N+   R+IP L DGLKP  R++LF   +     +KK V
Sbjct: 685 DKDTHTVSFKD-FVNKELVLFSNLDNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEV 740

Query: 73  KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
           K A+++G V  M  YH HG A++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 741 KVAQLAGAVGEMSAYH-HGEASLMATIINLAQDYVGSNNINLLLPIGQ--FGTRLQGGKD 797

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIA 183
            A+ RY   +L      L   + +  + F   Y+ + + EP   C   P VLVNG  GI 
Sbjct: 798 SASPRYIFTQLNPVTKALFPSVDESVLRFL--YEENQRIEPEWYCPIIPTVLVNGAEGIG 855

Query: 184 VGMATNIPTHNLGEVVDGCVAVI 206
              +T +P +N  E+V+    +I
Sbjct: 856 TAWSTKVPNYNPREIVENIRLMI 878


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  V   KK +K   ++G V G   + HG+ ++   + 
Sbjct: 677  RSIPSVVDGLKPGQRKVLYTCFKRNV---KKDMKVVELAGHVSGMTAYQHGDTSLQQTIV 733

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  + +   +  + + 
Sbjct: 734  GLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFNQQDEPLLTYN 793

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +++IP +N  ++V     ++D  +   +
Sbjct: 794  ED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEP--E 850

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG-----DREQIVVT 269
             +    RG                       G +  +G     K SG     + +++ +T
Sbjct: 851  PMQPWFRG---------------------FHGDVTPQGPDRY-KFSGRIQELNEKEVEIT 888

Query: 270  EIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ ++++ EK    I D +D +       VI++        +   L 
Sbjct: 889  ELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKSAVEEGLE 948

Query: 329  RYTSL-QSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
                L +++ + N+VA +  G   +  T+  ILK F A R +   RR ++ L++
Sbjct: 949  EKFKLSKTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQHQLSE 1002


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
            cuniculus]
          Length = 1667

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF  +      +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 777  RSIPSLVDGFKPGQRKVLFTCLNRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 832

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 833  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 892

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 893  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 948

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 949  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 991

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 992  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1050

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1051 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1098

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1099 EWLVGMLGAESTKLNNQARFI 1119


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 152/351 (43%), Gaps = 38/351 (10%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 653 RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 708

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 709 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 768

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + D    EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D 
Sbjct: 769 LYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LDP 825

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             ++     P++      +   G +N YA      V+           DR  + +TE+P 
Sbjct: 826 HPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELPV 868

Query: 274 ----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
               QV K  +LE +     +K    I+D ++       + V+++     A      L++
Sbjct: 869 RTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHK 927

Query: 330 YTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              LQ+  + N + L    G   +  T+  ILK F   R      R ++L+
Sbjct: 928 VFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLV 978


>gi|98990340|gb|ABF60239.1| DNA gyrase subunit A [Entomoplasma freundtii]
          Length = 88

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 5/87 (5%)

Query: 5  IISSDEEEEKG-----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
          ++S D +E K      I  + I  E++  +L YA++VI+ RA+PDL+DGLKPV RRI++ 
Sbjct: 2  LMSEDNKELKPFNHGKIEPIDIAAEIRKDFLEYAMSVIVSRALPDLKDGLKPVQRRIIYA 61

Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYH 86
          M  +G+  +K + K ARI GEV+GKYH
Sbjct: 62 MDDLGITADKPHKKSARIVGEVIGKYH 88


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 67/415 (16%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   +
Sbjct: 746  RSIPCLVDGFKPGQRKVLFACFKRA---DKREVKVAQLAGAVAELSAYH-HGEVSLMGTI 801

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              +AQD+    ++ +LL  GQ  FG+    G   A+ RY   +L      +      + +
Sbjct: 802  INLAQDYVGSNNINVLLPIGQ--FGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDNVL 859

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             F    +    EP   C   P VLVNG  GI  G +TNIP +N  E+V            
Sbjct: 860  RFLYEENQRI-EPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKN---------- 908

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIV 267
                + ++I G           +  +   Y   RG I+     R   + E    D   + 
Sbjct: 909  ----VKKLIAGE---------AQKALDPWYKNFRGKIIQIDPSRYACYGEVAVLDDNTVE 955

Query: 268  VTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +TE+P +       EK+ E + E   K+   ++D ++       + V++L  G      L
Sbjct: 956  ITELPIKTWTQEYKEKVLESLMESTDKKTPIVSDYKEYHTDTTVKFVVKLSPGK-----L 1010

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV-----VRRTKYLLNK 379
             +L R   L ++F +  V +N      F   G L+ +    EE+      VR+ KY+   
Sbjct: 1011 AELERSGDLHTVFKLQQV-INTTCMVLFDAAGCLRTYTT-PEEITQEFFDVRKEKYI--- 1065

Query: 380  ARDRAHVLVGLAIAVAN-LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
               R   +VG+  A +  L    R I    N E     +M+    AS ++ LI +
Sbjct: 1066 --QRKEYMVGVLQAQSKRLTNQARFILAKINNEI----IMENKKKASIVETLIKM 1114


>gi|118175423|gb|ABK76268.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 83.6 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           KYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSVDG   AA RYTE R++K
Sbjct: 1   KYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEK 54


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 112/500 (22%), Positives = 206/500 (41%), Gaps = 79/500 (15%)

Query: 29   YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YH 86
            + ++A N+   R+IP L DGLKP  R+ILF   +  +      +K +++SG V  +  YH
Sbjct: 791  HFSWAANI---RSIPSLIDGLKPGQRKILFASFKRRL---TSEIKVSQLSGYVAEQTSYH 844

Query: 87   PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFL 142
             HG  ++   + +MA ++  S  + L+   G FG+    GD  A+ RY   +L+  +  L
Sbjct: 845  -HGEQSLNSTIIKMAHNFVGSNNIPLLTPSGQFGTRLQGGDDSASARYIFTKLEPISRHL 903

Query: 143  LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
             +++    +++      S Q P       P VLVNG  GI VGMAT IP  +  ++++  
Sbjct: 904  FNEMDDALLNYLEEEGESIQ-PDYYVPIIPMVLVNGSEGIGVGMATTIPLFSPIDLIEQI 962

Query: 203  VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            +  +DN                 P   +I    G K        S    GV        D
Sbjct: 963  ICRLDNVP---------------PLKKIIPWYRGFKGTIQPNLKSYKTNGVIKF-----D 1002

Query: 263  REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             + +V++E+P     +   + + +L+ +  I    +   E+      ++   +     D+
Sbjct: 1003 GKGLVISELPIGKWTSDYKDVLNDLIEKDVIRGFQEANTENSVHFNILLSNQQMEEMEDL 1062

Query: 323  ILNQLYRYTSLQSLFSVNMVALN------GYK-PERFTLIGILKAFVAFREEVVVRRTKY 375
              N++     L S   +N+   +       Y+ PE      I+  F   R E   +R   
Sbjct: 1063 SENEMITLFKLSSNLHLNLTVFDEKNKIVKYESPEE-----IIDHFFNIRLEFYNKR--- 1114

Query: 376  LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
                   R+H++  L   +  L      I+F     + + ++  R+           LID
Sbjct: 1115 -------RSHLMASLTQQIKRLSST---IKFLETIASGKLKIQGRTKQQ--------LID 1156

Query: 436  D--SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
            D  S +  GS        + + +IL++   R+     D+++++LN   +E  +  D  SS
Sbjct: 1157 DLESQHDFGSHTPEEYQHLFSLSILDITKERI-----DNLQSQLNKRQVEFNQIKDSDSS 1211

Query: 494  RSRLLGIIKQELLSVKDELD 513
                  + K +L  +K+ L+
Sbjct: 1212 -----SLWKADLKQLKEYLE 1226


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 97/202 (48%), Gaps = 16/202 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K   +VS  D   N  L    N+   R+IP L DGLKP  R++LF   +     +KK V
Sbjct: 685 DKDTHTVSFKD-FVNKELVLFSNLDNERSIPSLVDGLKPGQRKVLFTCFKRA---DKKEV 740

Query: 73  KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
           K A+++G V  M  YH HG A++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 741 KVAQLAGAVGEMSAYH-HGEASLMATIINLAQDYVGSNNINLLLPIGQ--FGTRLQGGKD 797

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            A+ RY   +L      L   + +  + F    +    EP   C   P VLVNG  GI  
Sbjct: 798 SASPRYIFTQLNPVTKALFPSVDESVLRFLYEENQRI-EPEWYCPIIPTVLVNGAEGIGT 856

Query: 185 GMATNIPTHNLGEVVDGCVAVI 206
             +T +P +N  E+V+    +I
Sbjct: 857 AWSTKVPNYNPREIVENIRLMI 878


>gi|296427790|gb|ADH16507.1| topoisomerase IV subunit A [Shigella flexneri 2a]
          Length = 83

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 3/83 (3%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP--AAERYTECRLQKAAHFL 142
            DP   AA RYTE RL K +  L
Sbjct: 62  -DPKSFAAMRYTESRLSKYSELL 83


>gi|291163431|gb|ADD80742.1| ParC [Francisella endosymbiont of Dermacentor andersoni]
          Length = 168

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 97/170 (57%), Gaps = 9/170 (5%)

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I  +
Sbjct: 3   VYXSGXGSIRQQAVYEYDXHGN----VVITKLPHQVSXAAVMEQIANELKQQKITWIKXI 58

Query: 300 RDESD-RQGYRVVI-ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLI 355
           +DESD ++  ++V+       +   I+  L   T  +  F VNM  + L+  +P+   L+
Sbjct: 59  QDESDDKEPVKIVLYSATTKKNIKKIMGHLLATTDXEKNFRVNMNMIGLDN-RPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR
Sbjct: 118 DILNQWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIR 167


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 729  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 785  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 844

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 845  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 900

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 901  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 943

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 944  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1002

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1003 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1050

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1051 EWLVGMLGAESTKLNNQARFI 1071


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 729  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 785  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 844

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 845  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 900

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 901  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 943

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 944  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1002

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1003 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1050

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1051 EWLVGMLGAESTKLNNQARFI 1071


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
            Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 722  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 778  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 837

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 838  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 893

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 894  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 936

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 937  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 995

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 996  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1043

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1044 EWLVGMLGAESTKLNNQARFI 1064


>gi|308445295|gb|ADO32833.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHP G+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPRGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 729  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 785  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 844

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 845  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 900

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 901  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 943

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 944  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1002

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1003 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1050

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1051 EWLVGMLGAESTKLNNQARFI 1071


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
          Length = 1626

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 734  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 789

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 790  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 849

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 850  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 905

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 906  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 948

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 949  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1007

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1008 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1055

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1056 EWLVGMLGAESTKLNNQARFI 1076


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 67/415 (16%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   +
Sbjct: 746  RSIPCLVDGFKPGQRKVLFACFKRA---DKREVKVAQLAGAVAELSAYH-HGEVSLMGTI 801

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              +AQD+    ++ +LL  GQ  FG+    G   A+ RY   +L      +      + +
Sbjct: 802  INLAQDYVGSNNINVLLPIGQ--FGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDNVL 859

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             F    +    EP   C   P VLVNG  GI  G +TNIP +N  E+V            
Sbjct: 860  RFLYEENQRI-EPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKN---------- 908

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIV 267
                + ++I G           +  +   Y   RG I+     R   + E    D   + 
Sbjct: 909  ----VKKLIAGE---------AQKALDPWYKNFRGKIIQIDPSRYACYGEVAVLDDNTVE 955

Query: 268  VTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +TE+P +       EK+ E + E   K+   ++D ++       + V++L  G      L
Sbjct: 956  ITELPIKTWTQEYKEKVLESLMESTDKKTPIVSDYKEYHTDTTVKFVVKLSPGK-----L 1010

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV-----VRRTKYLLNK 379
             +L R   L ++F +  V +N      F   G L+ +    EE+      VR+ KY+   
Sbjct: 1011 AELERSGDLHTVFKLQQV-INTTCMVLFDAAGCLRTYTT-PEEITQEFFDVRKEKYI--- 1065

Query: 380  ARDRAHVLVGLAIAVAN-LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
               R   +VG+  A +  L    R I    N E     +M+    AS ++ LI +
Sbjct: 1066 --QRKEYMVGVLQAQSKRLTNQARFILAKINNEI----IMENKKKASIVETLIKM 1114


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 729  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 785  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 844

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 845  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 900

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 901  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 943

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 944  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1002

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1003 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1050

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1051 EWLVGMLGAESTKLNNQARFI 1071


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 159/380 (41%), Gaps = 52/380 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG AA+   +
Sbjct: 1277 RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSSYH-HGEAALMMTI 1332

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  +   +  + + F
Sbjct: 1333 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLVFPPMDDNILRF 1392

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  IP  ++ EVV+    ++D  +  
Sbjct: 1393 L--YDDNQRVEPEWYMPIIPMVLVNGAEGIGTGWACKIPNFDIREVVNNIRRLMDGEE-P 1449

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L  L      P +      +   G      +G  SI+            D   I +TE+P
Sbjct: 1450 LPML------PSYKNFKGTIDELGPNQYVISGEVSIL------------DSTTIEITELP 1491

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +       E++ E +    EK    I D ++       R V+++     A+     L++
Sbjct: 1492 VRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVRFVVKMTEDKLAEAEAVGLHK 1551

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAH 385
               LQ+  + N + L       F  +G LK + +     +E   +R   Y L     R  
Sbjct: 1552 VFKLQTSLTCNSMVL-------FDHVGFLKKYDSPQDILKEFFELRLRYYNL-----RKE 1599

Query: 386  VLVG-LAIAVANLDEVVRII 404
             L+G L    A L    R I
Sbjct: 1600 WLIGMLGAESAKLSNQARFI 1619


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1846

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 163/353 (46%), Gaps = 33/353 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R++++   +  +  + K V+ A    +V   YH HG A++   +  
Sbjct: 831  RSIPSVIDGLKPGQRKVMYACFKRNLTNDMKVVELAGYVSQVSA-YH-HGEASMQMTIVG 888

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L    +++  
Sbjct: 889  LAQNFVGSNNVNCLEPSGNFGSRLQGGSDAASARYIFTRLSPFARRVYSALDDPVLEYNV 948

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC---VAVIDNP--D 210
            + DG   EPV      P VL+NG  GI  G +TNIP ++  E+V+     +  +D+   +
Sbjct: 949  D-DGRSIEPVTYFPVVPMVLINGADGIGTGWSTNIPNYHPVEIVNNLKRRMGRLDDSGEE 1007

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
               + +M   RG                 A   G       G   I + +GD E + +TE
Sbjct: 1008 KPFETMMPWFRG-------------WKGTAEPAGPDRYKFNG---IIRETGDTE-VEITE 1050

Query: 271  IPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIEL-KRGASADVILNQLY 328
            +P ++       K+ E+++ +++   I D ++ +D +   ++I++  +   A ++     
Sbjct: 1051 LPIRMWTDDFKAKLEEIIKAEKVPSFIKDYKEFNDHKTVHMIIQMDDKHMKAALVEGLAE 1110

Query: 329  RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            ++   +++ + N+VA +  G   +   +  IL+ F   R ++   R  Y +NK
Sbjct: 1111 KFKLNKTVATSNLVAFDHRGQIRKYEKVEDILEEFYEQRFKMYTVRKAYWVNK 1163


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 734  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 789

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 790  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 849

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 850  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 905

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 906  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 948

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 949  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1007

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1008 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1055

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1056 EWLVGMLGAESTKLNNQARFI 1076


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 162/351 (46%), Gaps = 36/351 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK +K   ++G V G   + HG  ++   + 
Sbjct: 695  RSIPSVVDGLKPGQRKVLYTCFKRNL---KKDMKVVELAGHVSGMTAYQHGETSLQQTIV 751

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  + +   +  + + 
Sbjct: 752  GLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFNQQDEPLLTYN 811

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G +++IP +N  ++V     ++D  +   +
Sbjct: 812  ED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEP--E 868

Query: 215  ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +    RG                N   T +G    +    I + + D+E + +TE+P +
Sbjct: 869  PMQPWFRG---------------FNGEVTPQGPDRYKFSGRIHELN-DKE-VEITELPIR 911

Query: 275  VNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKR---GASADVILNQLYRY 330
                   +K+ ++++ EK    I D +D +       VI++      A+ +  L + ++ 
Sbjct: 912  TWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKAAVEEGLEEKFKL 971

Query: 331  TSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +  +++ + N+VA +  G   +  T+  ILK F A R +   RR ++ L++
Sbjct: 972  S--RTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQHQLSE 1020


>gi|284027752|gb|ADB66701.1| ParC [Salmonella enterica subsp. enterica]
          Length = 90

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + R +P + DGL PV RRI++ M  +GV    K+   AR  G+ +GK HPHG++A Y+ +
Sbjct: 7   MDRVLPSIGDGLGPVQRRIVYAMSALGVNATAKFKLSARTVGDGLGKNHPHGDSASYEDM 66

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVD 121
             MAQ +S R  L++GQGN+G+ D
Sbjct: 67  FLMAQPFSYRYPLVDGQGNWGAPD 90


>gi|33316585|gb|AAQ04611.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 147

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 8/140 (5%)

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           LFF++ G VY+ K + LP     ARG+ + N+L+    ERI  ++     E +    Y+V
Sbjct: 11  LFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKSYEDA---PYLV 67

Query: 650 FATKHGNVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            AT++G V+++KL+DF   NRSG I A+ L   DE++    C+ E D+LL +  GQ +RF
Sbjct: 68  LATQNGLVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSAEEDLLLVSANGQSIRF 126

Query: 709 PIS--AIRVFAGRNSVGVRG 726
             +  A+R   GR + GV+ 
Sbjct: 127 SATDDALRPM-GRATSGVQA 145


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 729  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 785  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 844

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 845  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 900

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 901  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 943

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 944  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1002

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1003 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1050

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1051 EWLVGMLGAESTKLNNQARFI 1071


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1520

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 152/364 (41%), Gaps = 63/364 (17%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   +
Sbjct: 748  RSIPCLVDGFKPGQRKVLFACFKRA---DKREVKVAQLAGAVAEISAYH-HGEQSLMGTI 803

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              +AQD+    ++ LLL  GQ  FG+    G   A+ RY   +L      L      + +
Sbjct: 804  VNLAQDYVGSNNINLLLPIGQ--FGTRLQGGKDSASARYIFTQLSPVTRTLFPAHDDNVL 861

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             F    +    EP   C   P VLVNG  GI  G +TNIP +N  E+V            
Sbjct: 862  RFLYEENQRI-EPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKN---------- 910

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIV 267
                +  +I G   P  A       +   Y   RG I+     R   + E    D   I 
Sbjct: 911  ----IKRLIAGE--PQKA-------LAPWYKNFRGKIIQIDPSRFACYGEVAVLDDNTIE 957

Query: 268  VTEIP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            +TE+P     Q  K  +LE + E   +K  V I D ++       + V++L  G      
Sbjct: 958  ITELPIKQWTQDYKEKVLEGLMESSDKKSPV-IVDYKEYHTDTTVKFVVKLSPGK----- 1011

Query: 324  LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----------FREEVVVRRT 373
            L +L R   L  +F +  V +N      F   G L+ + +           R+E  V+R 
Sbjct: 1012 LRELERGQDLHQVFKLQAV-INTTCMVLFDAAGCLRTYTSPEAITQEFYDSRQEKYVQRK 1070

Query: 374  KYLL 377
            +YLL
Sbjct: 1071 EYLL 1074


>gi|297521997|ref|ZP_06940383.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 177

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 73/109 (66%), Gaps = 4/109 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V    V+D DQI+++
Sbjct: 43  EGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMI 100

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+  +E VDE
Sbjct: 101 TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 147


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 150/354 (42%), Gaps = 45/354 (12%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALA 98
           +IP L DGLKP  R++LF   +     NK+ VK A+++G V  +  YH HG  ++   + 
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFKRA---NKREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368

Query: 99  RMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
            +AQD+    ++ LLL  GQ       G   A+ R    +L +    L      + + F 
Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFL 428

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
              +    EP   C   P VLVNG  G   G +TNIP +N  E+V               
Sbjct: 429 YEENQRI-EPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKN------------- 474

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIVVTE 270
            +  +I G   P  A       +   Y   RG I+     R   + E +  D   I +TE
Sbjct: 475 -IKRLIAGE--PQKA-------LAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITE 524

Query: 271 IPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ- 326
           +P +       EK+ E + E   K+   I D ++       + V++L  G   ++   Q 
Sbjct: 525 LPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQD 584

Query: 327 LYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           L++   LQ++ +   + L    G+     +   I + F   R+E  V+R +YLL
Sbjct: 585 LHQVFKLQAVINTTCMVLFDAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEYLL 638


>gi|46203155|ref|ZP_00051974.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 363

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 32/237 (13%)

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSL 333
           + KA ++EK+A+L++EK++  +AD+RDES  +  RVV+E + R     +++  L+R + L
Sbjct: 1   MPKARLIEKLADLLQEKKLPLLADVRDESA-EDVRVVLEPRSRSVDPVMLMESLFRLSEL 59

Query: 334 QSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           ++   +N+ V + G  P    L   L+ +V  R  V+ RR+ Y L +   R  +L GL I
Sbjct: 60  EARVPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLI 119

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
              +LDEV+RIIR    P+ A   LM R                            L++V
Sbjct: 120 VYLDLDEVIRIIREEDEPKAA---LMAR--------------------------FELTDV 150

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           Q  AIL+ RL  L  L   +++ E + L  E +   ++L S       I +++ +VK
Sbjct: 151 QANAILDTRLRSLRKLEEMELKREFDELTKEKQGIEELLGSEKLQWADITKQIRAVK 207


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 167/376 (44%), Gaps = 45/376 (11%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            +S  D +   ++ ++I   L R+IP + DGLKP  R++L+   +  +   KK VK   ++
Sbjct: 790  ISYDDFVNKEFILFSIADNL-RSIPSVMDGLKPGQRKVLYTCFRRNI---KKDVKVVELA 845

Query: 79   GEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTEC 133
            G V G   + HG A++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY   
Sbjct: 846  GSVSGSTDYAHGEASMQGTIVGLAQNFVGSNNINYLEPSGNFGSRLRGGADAASARYIYT 905

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            RL   A  L        + +  + DG   EP +     P +LVNG  GI  G ++ IP  
Sbjct: 906  RLSPFARRLFHAHDDALLKYGES-DGHKIEPEMFIPVLPTILVNGSSGIGTGWSSEIPNF 964

Query: 194  NLGEVVDGCVAVIDNPDIDLD--ALMEIIRGPDFPTGAVILGRTGIKNAYATGR----GS 247
            N        + +IDN  I L   A  E ++    P      G TG     A  R    G+
Sbjct: 965  N-------PMDIIDNIRIRLQDGASKEDMK----PMTPWYKGFTGTTETLAADRFQFTGT 1013

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRD--ESD 304
            I   G + +E          VTE+P +       EK+ ++++ EK    I D  D    D
Sbjct: 1014 IRQTGENELE----------VTELPVRYWTQDFKEKLEDIIKAEKTPAFIKDYIDYNTPD 1063

Query: 305  RQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAF 361
            R  + + +E K   +A    L + ++  S QS  + N+VA +  G   +  +++ I++ F
Sbjct: 1064 RVHFIIKMEDKHMLNAVQKGLEETFKLYSKQS--TSNLVAFDAQGRIHKYASVLDIMEEF 1121

Query: 362  VAFREEVVVRRTKYLL 377
               R     +R ++ L
Sbjct: 1122 YHVRLRYYEKRKQHQL 1137


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 49/382 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+ N    R+IP++ DG KP  R+++F  ++     +++ V
Sbjct: 677  EKDTRAVSFSDFINVELVLYS-NYDNVRSIPNMIDGFKPGQRKVMFTCLKRN---DRREV 732

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 733  KVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 791

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++      D    +  YD + + EPV      P VLVNG  GI  G
Sbjct: 792  SPRYIFTMLSPLARYIFHK--HDDALLKHEYDDNQKIEPVFYIPVIPMVLVNGADGIGTG 849

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    ++D   ID   +      P +     ++   G      +G 
Sbjct: 850  WMTKIPNYNPREIIENLQRMMDG--IDPKPMT-----PYYKNFKGVVESCGDFRYVISGE 902

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIP----YQVNKAAMLEKIAELVREKRIVDIADLRD 301
             S++  G   +E          +TE+P     Q  K  +LE +     +K    I D ++
Sbjct: 903  ISVI--GPDKLE----------ITELPIGTWTQTYKETVLEPMLH-GSDKTPAVITDYKE 949

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVA------LNGYKPERFTL 354
             +       ++ L R    ++  + L++   +Q+  ++ +M A      LN Y     ++
Sbjct: 950  YNTDTAVHFIVMLNRDKLLELEKDGLHKAFKIQTTMTITSMCAFDENQCLNKYD----SV 1005

Query: 355  IGILKAFVAFREEVVVRRTKYL 376
            I ILK F   R +   +R  YL
Sbjct: 1006 IQILKRFYKVRMDTYHKRKDYL 1027


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 204/501 (40%), Gaps = 65/501 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+ILF   +  +   K  +K A++SG V     YH HG  ++   
Sbjct: 671  ARSIPSLCDGLKPGQRKILFACFKRNL---KNEIKVAQLSGYVAEHSAYH-HGEQSLEST 726

Query: 97   LARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            +  MAQ +    ++  L+  GQ  FGS  + G   A+ RY    L K    +  +   D 
Sbjct: 727  IVGMAQSFVGTNNINYLMPIGQ--FGSRNMGGKEAASARYIHTCLNKITRCVFPEPD-DH 783

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA-VIDNP 209
            + +    +G   EP+      P  L+NG  GI  G +T+IP +N  E+VD     ++  P
Sbjct: 784  ILYYLEDEGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMGVP 843

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
              DL    +              G TG I N     +  I + G  H+   +     I +
Sbjct: 844  FTDLLPWYK--------------GFTGEISN---NEKSQITVSGKYHLVNETT----IEI 882

Query: 269  TEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
            TE+P +    +    LE+  E  ++K   +I D+++         V+++       V   
Sbjct: 883  TELPIKKWIRDYKNFLEEKLESTKDKD-PEIEDIKEYHAGNRVHFVVKMSEKQMEKVQRE 941

Query: 326  QLYRYTSLQSLF-SVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             + +Y  LQS   + NMV  N   K  R+  +  I++ F   R     RR +YL++K   
Sbjct: 942  GIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVSKIER 1001

Query: 383  RAHVLVGLA-IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
               +L       +A ++E +R+         A+R            KDLI  +    Y  
Sbjct: 1002 DLEILSNKKRFILAVINESIRV-------RNAKR------------KDLIKELSVQGYVQ 1042

Query: 442  GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
              D     S   T  + + +         +   NE+N+        L + S     +  I
Sbjct: 1043 MKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEI 1102

Query: 502  KQELLSVKDELDTPRRTRIVE 522
            KQE  + +DELD    T +++
Sbjct: 1103 KQEQKNKQDELDKLVATEVID 1123


>gi|114586205|ref|XP_516332.2| PREDICTED: DNA topoisomerase II, beta isozyme [Pan troglodytes]
          Length = 1634

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 742  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 797

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 798  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 857

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 858  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 913

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 914  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 956

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 957  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1015

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1016 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1063

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1064 EWLVGMLGAESTKLNNQARFI 1084


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 41/352 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DGLKP  R++LF   +  +   K+ +K  ++ G +     YH HG+ ++   +
Sbjct: 673 RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQLGGYIAEHSAYH-HGDLSLVSTI 728

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++    ++ LLL +GQ    ++ G   A+ RY    L K   ++  +     + +
Sbjct: 729 IGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHLLKY 788

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + + DG   EP       P  LVNG  GI  G +T+I  +N  E+V+     +D      
Sbjct: 789 QED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIELVNQIKNRLDGQ---- 843

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP- 272
                    P  P         GI      G G  +I+G+    + +   + I + E+P 
Sbjct: 844 ---------PFQPMTPFYRNFDGIIENLPNGNG--IIKGIIDCNEAT---DIITIRELPI 889

Query: 273 --YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
             +  N    L+K  E+  E     I DLR+   +      I++  G  +D  L     Y
Sbjct: 890 KKWTRNYKEWLDK--EMAEEGS--QIVDLREYHTKYKIHFEIQMVDGFVSD--LKNPLEY 943

Query: 331 TSLQSLFSV-NMVALN-GYKPERFTLIG-ILKAFVAFREEVVVRRTKYLLNK 379
             L +  S  NMV  +   K +++  +  I++ F   R +   +R +YL++K
Sbjct: 944 FKLSTPASCSNMVLFDSNNKIKKYECVSDIMEEFYQVRLQFYHKRKEYLVSK 995


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 171/402 (42%), Gaps = 39/402 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 711  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEISLMMTI 766

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   L  + + F
Sbjct: 767  INLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPALDDNVLKF 826

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G +  +P ++  E+V+    ++D     
Sbjct: 827  M--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDG---- 880

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
             D   +++  P +     ++   G       G  S++            D   I ++E+P
Sbjct: 881  -DEPQQML--PSYKNFKGVIQELGPNQFILNGEVSVL------------DSTTIEISELP 925

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +       E++ E +    EK    I D ++       R ++++     A+     L++
Sbjct: 926  ARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVRFLVKMTEQKLAEAEAAGLHK 985

Query: 330  YTSLQSLFSVNMVALN---GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               LQ+  + N + L    G   +  T++ IL+ F   R +    R  +L+      A  
Sbjct: 986  VFKLQASLTCNSMVLFDHVGCLRKYETVLDILREFFDLRVKYYSLRKDWLVGMLTAEASK 1045

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            L   A  +    E   +I   P  E  +  L+QR +++  +K
Sbjct: 1046 LSNQARFILEKIEGKIVIENKPKKELIQM-LVQRGYDSDPVK 1086


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1680

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 204/501 (40%), Gaps = 65/501 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+ILF   +  +   K  +K A++SG V     YH HG  ++   
Sbjct: 689  ARSIPSLCDGLKPGQRKILFACFKRNL---KNEIKVAQLSGYVAEHSAYH-HGEQSLEST 744

Query: 97   LARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            +  MAQ +    ++  L+  GQ  FGS  + G   A+ RY    L K    +  +   D 
Sbjct: 745  IVGMAQSFVGTNNINYLMPIGQ--FGSRNMGGKEAASARYIHTCLNKITRCVFPEPD-DH 801

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA-VIDNP 209
            + +    +G   EP+      P  L+NG  GI  G +T+IP +N  E+VD     ++  P
Sbjct: 802  ILYYLEDEGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMGVP 861

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
              DL    +              G TG I N     +  I + G  H+   +     I +
Sbjct: 862  FTDLLPWYK--------------GFTGEISN---NEKSQITVSGKYHLVNETT----IEI 900

Query: 269  TEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
            TE+P +    +    LE+  E  ++K   +I D+++         V+++       V   
Sbjct: 901  TELPIKKWIRDYKNFLEEKLESTKDKD-PEIEDIKEYHAGNRVHFVVKMSEKQMEKVQRE 959

Query: 326  QLYRYTSLQSLF-SVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             + +Y  LQS   + NMV  N   K  R+  +  I++ F   R     RR +YL++K   
Sbjct: 960  GIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVSKIER 1019

Query: 383  RAHVLVGLA-IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
               +L       +A ++E +R+         A+R            KDLI  +    Y  
Sbjct: 1020 DLEILSNKKRFILAVINESIRV-------RNAKR------------KDLIKELSVQGYVQ 1060

Query: 442  GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
              D     S   T  + + +         +   NE+N+        L + S     +  I
Sbjct: 1061 MKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEI 1120

Query: 502  KQELLSVKDELDTPRRTRIVE 522
            KQE  + +DELD    T +++
Sbjct: 1121 KQEQKNKQDELDKLVATEVID 1141


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 821  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 876

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 877  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 936

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 937  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 992

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 993  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 1035

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 1036 VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1094

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1095 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1142

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1143 EWLVGMLGAESTKLNNQARFI 1163


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 1152 RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 1207

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   +  L   +  + + F
Sbjct: 1208 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKF 1267

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 1268 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 1323

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 1324 PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 1366

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 1367 VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1425

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1426 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1473

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1474 EWLVGMLGAESTKLNNQARFI 1494


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1416

 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 160/362 (44%), Gaps = 43/362 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +   K  +K A++ G V     YH HG  ++   +
Sbjct: 681  RSIPSLCDGLKPGQRKILFSCFKRNL---KSEIKVAQLIGYVAEHSAYH-HGEQSLASTI 736

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+ +  G   A+ RY    L K    L  +     + +
Sbjct: 737  IGMAQNFVGSNNINLMMPIGQFGTRNQGGKEHASARYIFTSLSKITRILFPEHDDHVLKY 796

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID-NPDID 212
              + D    EP       P  LVNG  GI  G +T+IP +N  E+V+     ++  P  +
Sbjct: 797  LED-DNQVVEPEWYMPIIPMCLVNGSSGIGTGWSTDIPNYNHKEIVEQIRGKLEGKPFTE 855

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L    +  +G                      +G  +++G   I++     E I +TE+P
Sbjct: 856  LHPWYKGFQG----------------QIEINPKGGYIVKGQYEIDEV---EETIKITELP 896

Query: 273  ---YQVNKAAMLEKIAELVREKRIVDIADLRD--ESDRQGYRVVIELKRGASADVILNQL 327
               +  +    LE++  L   K   +I D+R+   ++R  + V     R      I  +L
Sbjct: 897  VGKWTRDYKNYLEEL--LSPPKGEPEIEDIREYHTNNRVHFEVQAIPGRIQQWGDIEKKL 954

Query: 328  YRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
               T++Q   + N+V  N  YK +R+ + + I++ F A R +   +R  YL++K +    
Sbjct: 955  KLSTTMQ---TTNIVMFNDKYKLKRYQSTVEIMEEFYALRLKCYQKRKDYLVSKIQRDVD 1011

Query: 386  VL 387
            +L
Sbjct: 1012 IL 1013


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 42/332 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 586 RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 641

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 642 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 701

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + D    EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D 
Sbjct: 702 LYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LDP 758

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             ++     P++      +   G +N YA      V+           DR  + +TE+P 
Sbjct: 759 HPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELPV 801

Query: 274 ----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
               QV K  +LE +     +K    I+D ++       + V+++     A      L++
Sbjct: 802 RTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHK 860

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
              LQ+  + N + L       F  +G LK +
Sbjct: 861 VFKLQTTLTCNSMVL-------FDHMGCLKKY 885


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 44/355 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 716  RSIPCMLDGLKPGQRKVMFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQSLCSTI 771

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+   G FG+    G   A+ RY    L      +   L    +++
Sbjct: 772  INLAQNFVGSNNINLLYPGGQFGTRLTGGKDSASPRYIFTMLSTLTRLIFHPLDDPLLEY 831

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--DNPDI 211
            +   D    EPV      P +LVNG  GI  G +T IP HN  +V+     ++  + P +
Sbjct: 832  QYE-DNQRIEPVWYLPIIPMLLVNGAEGIGTGWSTKIPNHNPRDVIANIRRMLNGEEPKV 890

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             L+   +  RG        ++   G +     G  +++            D ++I ++E+
Sbjct: 891  -LNPWYKNFRG--------LVESVGHQKYLTVGNVALL------------DGQKIEISEL 929

Query: 272  P----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI---- 323
            P     Q  K  +LE +     +++ V I+D ++ +     R V+    G  A +     
Sbjct: 930  PIGTWTQTYKENVLEPLLHGSDKQKAV-ISDYKEYNTDTTVRFVVSFLPGEYAKLYAEEG 988

Query: 324  -LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++L++ TS  S  S+N      Y         I + F   R E   +R +YLL
Sbjct: 989  GFHRLFKLTSSISTSSMNAFDDKNYLKRYDHANSIFQDFYTIRLEYYGKRREYLL 1043


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 149/356 (41%), Gaps = 48/356 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF  ++  +   K  +K A+++G V  +  YH HG A++   +
Sbjct: 766  RSIPQLVDGWKPGQRKVLFACIKKNM---KHEIKVAQLAGYVAEVSAYH-HGEASLQQTI 821

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  L  +E  G FGS    G   +A RY   RL      +  +     +++
Sbjct: 822  VTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPILEY 881

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID- 212
                +G   EP +     P VL+NG  GI  G ++ +P +N  +V++     ID  ++  
Sbjct: 882  EYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEEMQR 940

Query: 213  --------LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
                       + E   G  F T  ++            G G+  I  +  I+K + D +
Sbjct: 941  MTPWYRGFRGKIEENSAGTGFETSGLV---------EKCGEGAFEITELP-IKKWTQDYK 990

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + +   +P                 EKR   IAD RD S  +     +++          
Sbjct: 991  EWLEENLP---------------TAEKRDTLIADYRDCSSHEEIHFTVKVSEERLERPER 1035

Query: 325  NQLYRYTSLQ-SLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLL 377
              L +Y  L+ SL + N+   + + + +R+   + I+K F   R +   RR  Y L
Sbjct: 1036 EGLEKYFKLKTSLSTTNLTLFDPHGRVQRYANELEIIKEFAPIRLDFYHRRKAYCL 1091


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 711  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 766

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   +  L   +  + + F
Sbjct: 767  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKF 826

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 827  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 882

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 883  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 925

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 926  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 984

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 985  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1032

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1033 EWLVGMLGAESTKLNNQARFI 1053


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 720  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 775

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   +  L   +  + + F
Sbjct: 776  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKF 835

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 836  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 891

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 892  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 934

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 935  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 993

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 994  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1041

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1042 EWLVGMLGAESTKLNNQARFI 1062


>gi|308445275|gb|ADO32823.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+  E++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVREILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 11/187 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S  D +    +T++++ +L R++P+L DG KP HR++ +G ++  +   K+ +K + ++
Sbjct: 715 ISYYDFIHKELITFSVDDVL-RSVPNLMDGFKPSHRKVFYGSVEKNIY--KQEIKVSDLT 771

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
           G V  M KYH HG+ ++   +  MAQ++  S  L L+   G FGS    G   A+ RY  
Sbjct: 772 GFVSNMTKYH-HGDQSLSSTIVGMAQNYVGSNNLNLLMPLGMFGSRLTGGKDSASPRYLN 830

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  +  D   D +  +   D    EPV      P +LVNG  GI  G +T I  
Sbjct: 831 TKLDDLAKKIFIDYDFDILQHQSE-DNCRIEPVYYAPIIPMILVNGAEGIGTGYSTKIYP 889

Query: 193 HNLGEVV 199
            N  +++
Sbjct: 890 CNPRDII 896


>gi|288565|emb|CAA78821.1| DNA topoisomerase II [Homo sapiens]
          Length = 1031

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 139 RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 194

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 195 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 254

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 255 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 310

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 311 PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 353

Query: 273 ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 354 VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 412

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
           +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 413 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 460

Query: 385 HVLVG-LAIAVANLDEVVRII 404
             LVG L      L+   R I
Sbjct: 461 EWLVGMLGAESTKLNNQARFI 481


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R+++F   +  +  ++K V+ A    E    YH HG  ++   +  
Sbjct: 752  RSIPSVLDGLKPGQRKVMFACFKRNLTKDQKVVELAGYVSEKAA-YH-HGEMSLQQTIIG 809

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  ++ + 
Sbjct: 810  LAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHTRLSPFARKIFSVLDEPNLEVQM 869

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC---VAVIDNPDID 212
              DG   EP V     P VL NG  GI  G +T+IP ++  E+V      +  +D+ D +
Sbjct: 870  E-DGKPIEPKVYAPIIPMVLCNGADGIGTGWSTSIPNYHPMEIVRAIKRRMGRLDSDDTE 928

Query: 213  ---LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                + +M   R           G  G        R      G+   +  +G   +I++ 
Sbjct: 929  GKPFETMMPWFR-----------GWKGTPEPAEKDR--YKFNGIYETDDKTG---EIIIK 972

Query: 270  EIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ-- 326
            E+P ++       K+ E++   K    I D ++ +D +    VI+L      D+      
Sbjct: 973  ELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFNDHKNVNFVIQLDEKHYKDIHKTHEG 1032

Query: 327  -LYRYTSLQSLFSVNMVALNGY----KPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             + R+   + + + N+VA +      K E+  +  IL+ F  +R ++   R K+ L
Sbjct: 1033 IMDRFKLNKQVATSNLVAFDSTGRIRKYEK--VEDILEEFYVYRLDMYSARKKHWL 1086


>gi|62087338|dbj|BAD92116.1| DNA topoisomerase II, beta isozyme variant [Homo sapiens]
          Length = 1009

 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 117 RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 172

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 173 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 232

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 233 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 288

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 289 PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 331

Query: 273 ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 332 VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 390

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
           +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 391 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 438

Query: 385 HVLVG-LAIAVANLDEVVRII 404
             LVG L      L+   R I
Sbjct: 439 EWLVGMLGAESTKLNNQARFI 459


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 48/356 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 869  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 924

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 925  VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPSVDDNLLKF 984

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 985  L--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 1040

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 1041 PHPML-----PNYKNFKGTIQEIG-QNQYAVSGEIFVV-----------DRNTVEITELP 1083

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++            L+
Sbjct: 1084 VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLVQAEAAGLH 1142

Query: 329  RYTSLQSLFSVN-------MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +   LQ+  + N       M  L  Y+    T+  ILK F   R      R ++L+
Sbjct: 1143 KVFKLQTTLTCNSMVLFDHMGCLKKYE----TVQDILKEFFDLRLNYYSLRKEWLV 1194


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
            caballus]
          Length = 1630

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 741  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 796

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 797  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 856

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++   +D
Sbjct: 857  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEG--LD 912

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 913  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 955

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 956  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1014

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 1015 KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1062

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1063 EWLVGMLGAESTKLNNQARFI 1083


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 170/423 (40%), Gaps = 86/423 (20%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   +
Sbjct: 731  RSIPCLVDGFKPGQRKVLFACFKRA---DKREVKVAQLAGAVAEISAYH-HGEQSLMGTI 786

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              +AQD+    ++ LLL  GQ  FG+    G   A+ RY   +L      +      + +
Sbjct: 787  VNLAQDFVGSNNINLLLPIGQ--FGTRLQGGKDSASARYIFTQLSPVTRSIFPAHDDNVL 844

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             F    +    EP   C   P VLVNG  GI  G +TNIP +N  ++V            
Sbjct: 845  RFLYEENQRI-EPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRDIVKN---------- 893

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIV 267
                +  +I G           +  I   Y   RG+I+     R   + E  + D   I 
Sbjct: 894  ----IKRLIAGE---------SQKAIAPWYKNFRGNIIQIDSSRYACYGEVATIDDNTIE 940

Query: 268  VTEIPYQVNKAAMLEKIAELV-----REKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            +TE+P +       EK+ E +     ++K+   + D ++       + V++L  G     
Sbjct: 941  ITELPVKQWTQDYKEKVLEALLDSSDKDKKAPLVLDYKEYHTDTTVKFVVKLAPGK---- 996

Query: 323  ILNQLYRYTSLQSLFSVNMV-------------ALNGY-KPERFTLIGILKAFVAFREEV 368
             L +L R   L  +F +  V              L  Y  PE  T     + F   R+E 
Sbjct: 997  -LRELERGEDLHQVFKLQSVINTTCMVLFDAAGCLRTYSSPEEIT-----QEFYDCRKEK 1050

Query: 369  VVRRTKYLLNKARDRAHVLVGLA----------IAVANLDEVVRI-----IRFSPNPETA 413
             ++R  YLL   + ++  L   A          I + N  + V +     ++F P+P   
Sbjct: 1051 YIQRKDYLLGVLQAQSQRLTNQARFIVAKINNEIVMENKKKAVIVETLIKMKFDPDPVKK 1110

Query: 414  RRE 416
             +E
Sbjct: 1111 WKE 1113


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 162/382 (42%), Gaps = 56/382 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 712  RSIPCMVDGLKPGQRKVVFCCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEVSLMMTI 767

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + +
Sbjct: 768  VGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKY 827

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              NYD + + EP       P VL NGG GI  G A+ IP +++ E+++    +++  +  
Sbjct: 828  --NYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREIINNIHRMLNGEE-- 883

Query: 213  LDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                      P  P+     G      KN Y    G + I   + IE          +TE
Sbjct: 884  --------PLPMLPSYKGFKGTIDELAKNQYVNN-GEVAIIDSTTIE----------ITE 924

Query: 271  IPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E + E++    EK    I D ++       R V+++      +     L
Sbjct: 925  LPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGL 984

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDR 383
            ++   LQ+L + N + L       F  +G LK + +     +E   +R   Y+L     R
Sbjct: 985  HKVFKLQNLLTCNSMVL-------FDHVGSLKKYESVQDILKEFFELRMKYYVL-----R 1032

Query: 384  AHVLVG-LAIAVANLDEVVRII 404
               LVG L    A L    R I
Sbjct: 1033 KDWLVGMLGAESAKLSNQARFI 1054


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 171/402 (42%), Gaps = 39/402 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 711  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEISLMMTI 766

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   L  + + F
Sbjct: 767  INLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPALDDNVLKF 826

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G +  +P ++  E+V+    ++D     
Sbjct: 827  M--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDG---- 880

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
             D   +++  P +     ++   G       G  S++            D   I ++E+P
Sbjct: 881  -DEPQQML--PSYKNFKGVIQELGPNQFILNGEVSVL------------DSTTIEISELP 925

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +       E++ E +    EK    I D ++       R ++++     A+     L++
Sbjct: 926  ARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVRFLVKMTEQKLAEAEAAGLHK 985

Query: 330  YTSLQSLFSVNMVALN---GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               LQ+  + N + L    G   +  T++ IL+ F   R +    R  +L+      A  
Sbjct: 986  VFKLQASLTCNSMVLFDHVGCLRKYETVLDILREFFDLRVKYYSLRKDWLVGMLTAEASK 1045

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            L   A  +    E   +I   P  E  +  L+QR +++  +K
Sbjct: 1046 LSNQARFILEKIEGKIVIENKPKKELIQM-LVQRGYDSDPVK 1086


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R++L+   +  +  +KK V+ A    E    YH HG A++   +  
Sbjct: 807 RSIPSVIDGLKPGQRKVLYACFKRNLIKDKKVVELAGYVSEHTA-YH-HGEASLQQTIIG 864

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQ++  S  + ++E  GNFGS    G   A+ RYT  RL   A  +   L  D    + 
Sbjct: 865 LAQNFVGSNNINILEPSGNFGSRLAGGSDAASPRYTFTRLAPFAKKIFSPL--DEACLKH 922

Query: 156 NY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
            Y DG   EP V     P VLVNG  GI  G +T IP ++  ++V
Sbjct: 923 QYEDGKRIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIV 967


>gi|18202021|sp|O33149|GYRA_MYCMA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mma
           gyrA intein
 gi|2546990|emb|CAA05167.1| DNA gyrase subunit A [Mycobacterium malmoense]
          Length = 473

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 38/50 (76%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           MG YHPHGNA+IY+ L RMAQ WSLR  L+ GQGNFGS   +PPAA RY 
Sbjct: 1   MGNYHPHGNASIYNTLVRMAQPWSLRYPLVNGQGNFGSPGNNPPAAMRYC 50


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f.
           nagariensis]
          Length = 1126

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 29/289 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
           L R+IP++ DGLKP  R+I+F   +  +   KK +K A++S  V     YH HG  ++  
Sbjct: 682 LDRSIPNVLDGLKPGQRKIMFACFKRNL---KKDIKVAQLSAYVAEHSAYH-HGEQSLAS 737

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  +AQD+  S  + L+   G FG+    G   A+ RY   RL+K    L ++   D +
Sbjct: 738 TIVNLAQDFVGSNNINLLHPSGQFGTRLQGGKDAASARYIYTRLEKLTRHLFNE-HDDVL 796

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N +G   EP       P VLVNG  GI  G +T IP +N  +++     +++    
Sbjct: 797 LKYLNEEGQSIEPEWYLPILPTVLVNGAEGIGTGWSTFIPNYNPRDIIANLRRLLNGE-- 854

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           + D L    RG    TG +       +  + +G  S V+ G+  + +T  +   I VTE+
Sbjct: 855 EQDPLHPWYRG---FTGTI------TEVPHKSGSRSYVVGGL--VAQTGPN--TIEVTEL 901

Query: 272 PYQVNKAAMLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRG 317
           P +       E +  L+R +   +   IAD  +         V+EL  G
Sbjct: 902 PVRKWTQDYKEFLETLLRPQDKDEAPLIADYHEHHSDSNVHFVVELLPG 950


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 162/392 (41%), Gaps = 47/392 (11%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   VS +D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKHVSYSDFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 724  VAQLSGSVAEMSAYH-HGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCAS 782

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      +   L    + ++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 783  ARYIFTLMSPLTRLIYHPLDDPLLQYQVD-DGQRIEPLWYIPIIPMVLVNGAEGIGTGWS 841

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-- 245
            T I  +N  +++     +I+N +               P        TG     + GR  
Sbjct: 842  TKIANYNPRDMITNLRRMINNEE-------------PLPLHPWYKNFTGTMEYVSDGRYV 888

Query: 246  --GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR---EKRIVDIADLR 300
              G++ I   + IE          +TE+P  V      E + E++    EK    I+D R
Sbjct: 889  HSGNVQILPDNRIE----------ITELPIGVWTQNYKENVLEVLSNGTEKVKAIISDYR 938

Query: 301  DESDRQGYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVN-MVALNGYKP-ERF-TLI 355
            +       R VI    G    +   +   +R   L S  S N M A +      RF T  
Sbjct: 939  EYHTDTTVRFVITFAPGEFERLRSEEGGFHRVLKLSSSISTNQMHAFDENNCLRRFPTPK 998

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             IL  F   R E   RR  YL+ +   +A  L
Sbjct: 999  DILVEFYKLRLEYYNRRKDYLVGQLTAQADRL 1030


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 722  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 778  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 837

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++   +D
Sbjct: 838  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEG--LD 893

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 894  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 936

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 937  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 995

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 996  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1043

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1044 EWLVGMLGAESTKLNNQARFI 1064


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
            180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 161/376 (42%), Gaps = 44/376 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF  ++     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 733  RSIPSLVDGLKPGQRKVLFTCVKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 788

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + +++  G FG+    G   A+ RY    L   A  L   +    + F
Sbjct: 789  VNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSSLLKF 848

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G A  IP ++  E+V+    ++++ D  
Sbjct: 849  L--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNHQD-P 905

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L  L      P +      +   G      +G  S++            D+  I ++E+P
Sbjct: 906  LPML------PSYKNFKGTIHELGQNQYLVSGEVSVL------------DKNTIEISELP 947

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +    A  E + E +    +K    I+D ++       + V+ +     A      L++
Sbjct: 948  VRTWTQAYKESVLEPMLQGTDKTPPLISDYKEYHTDTTVKFVVRMTEEKLAQAEAAGLHK 1007

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
               LQS  + N + L       F  +G +K + +  +E++    +  L+  + R   LVG
Sbjct: 1008 VFKLQSSLTCNSMVL-------FDHMGCMKRYESV-QEILKEFFELRLHYYKLRKDWLVG 1059

Query: 390  -LAIAVANLDEVVRII 404
             L    A L    R +
Sbjct: 1060 SLGAESAKLSNQARFV 1075


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 29/260 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R+I+F   +  +  + K V+ A    E    YH HG  ++   +  
Sbjct: 683 RSIPSVIDGLKPGQRKIIFSSFKRRLTRSIKVVQLAGYVSE-HAAYH-HGEQSLVQTIVG 740

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQ++  S  + L++  G FG+    G   AA RY   RL   A ++        VD++ 
Sbjct: 741 LAQNFVGSNNVPLLQQDGQFGTRLQGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKD 800

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           + DG   EP       P VLVNG  GI  G ATNIP ++  EV+D               
Sbjct: 801 D-DGLSVEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDN-------------- 845

Query: 216 LMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           LM ++RG +  P      G  G        +G  V  G +++         + +TE+P  
Sbjct: 846 LMRLLRGEEVQPMKPWYFGFAG--TIEEKEKGKFVSTGCANVRPDG----VVQITELPIG 899

Query: 275 VNKAAMLEKIAELVREKRIV 294
                  +K  E +REK +V
Sbjct: 900 TWTQG-YKKFLEELREKEVV 918


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 172/412 (41%), Gaps = 52/412 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +  +
Sbjct: 646  VNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFKRNL 704

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 705  VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 762

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY   RL + +  +        V+++ + DG   EP       P VLVNG  G
Sbjct: 763  GKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTG 821

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD-FPTGAVILGRTGIKNA 240
            I  G +T+IP +N  E++                L  ++RG +         G TG    
Sbjct: 822  IGTGFSTSIPNYNPLEIISN--------------LERLMRGEEVHKMQPWYFGFTGTMEE 867

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G      + VSH          + +TE+P  V   A  +K  E +REK +V     R
Sbjct: 868  KEPG------KFVSHGRYEIRPDGVVCITELPIGVWTQA-YKKFLEDMREKELV--VQYR 918

Query: 301  DES-----DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFT 353
            + +     D + +     L++  S DV+  +L      + + + N++A N  G   +   
Sbjct: 919  EHTTDVTVDFEVFLHPQVLEQWVSQDVVEERL---QLKEYVHATNIIAFNKEGQITKYSD 975

Query: 354  LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
               +LK F   R +   +R +YLL + R             + L+ +VR +R
Sbjct: 976  AESVLKEFYLVRLDYYAKRKQYLLGELRR----------LTSKLENMVRFVR 1017


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 172/412 (41%), Gaps = 52/412 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +  +
Sbjct: 646  VNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFKRNL 704

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 705  VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 762

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY   RL + +  +        V+++ + DG   EP       P VLVNG  G
Sbjct: 763  GKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTG 821

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD-FPTGAVILGRTGIKNA 240
            I  G +T+IP +N  E++                L  ++RG +         G TG    
Sbjct: 822  IGTGFSTSIPNYNPLEIISN--------------LERLMRGEEVHKMQPWYFGFTGTMEE 867

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G      + VSH          + +TE+P  V   A  +K  E +REK +V     R
Sbjct: 868  KEPG------KFVSHGRYEIRPDGVVCITELPIGVWTQA-YKKFLEDMREKELV--VQYR 918

Query: 301  DES-----DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFT 353
            + +     D + +     L++  S DV+  +L      + + + N++A N  G   +   
Sbjct: 919  EHTTDVTVDFEVFLHPQVLEQWVSQDVVEERL---QLKEYVHATNIIAFNKEGQITKYSD 975

Query: 354  LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
               +LK F   R +   +R +YLL + R             + L+ +VR +R
Sbjct: 976  AESVLKEFYLVRLDYYAKRKQYLLGELRR----------LTSKLENMVRFVR 1017


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 722  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 778  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 837

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++   +D
Sbjct: 838  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEG--LD 893

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 894  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 936

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 937  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 995

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 996  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1043

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1044 EWLVGMLGAESTKLNNQARFI 1064


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 40/352 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +++ VK A+++G V  M  YH HG  A+   +
Sbjct: 1037 RSIPSLVDGFKPGQRKVLFTCCKRN---DRREVKVAQLAGSVAEMSAYH-HGEQALMMTI 1092

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 1093 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 1152

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 1153 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 1208

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 1209 PHPML-----PNYKNFRGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 1251

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 1252 VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1310

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +   LQ+  + N + L    G   +  T+  ILK F   R      R ++L+
Sbjct: 1311 KVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNYYSLRKEWLM 1362


>gi|260807655|ref|XP_002598624.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
 gi|229283897|gb|EEN54636.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
          Length = 1181

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 46/343 (13%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DGLKP  R++LF  ++     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 173 RSIPSLVDGLKPGQRKVLFTCLKRN---DKREVKVAQLAGSVAEMSAYH-HGETSLMGTI 228

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L +   +  +++
Sbjct: 229 INLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIFTMLSTLARKLFNTFDEPMLNY 288

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +  YD + + EP       P VLVNG  GI  G +T +P +++ E+++  + +ID  D  
Sbjct: 289 Q--YDDNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPNYDVREIINNMLRMIDGKDP- 345

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI----VIRGVSHIEKTSGDREQIVV 268
                                   +  +Y   +G I      R V++ E    D   I +
Sbjct: 346 ----------------------LPMNPSYKNFKGDIEELEENRFVANGEVAILDNNTIEI 383

Query: 269 TEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           TE+P +       E + E++    EK    I D ++       R V+ +           
Sbjct: 384 TELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTVRFVVSMTEEQLMKAEAA 443

Query: 326 QLYRYTSLQS-LFSVNMVAL--NGYKPERFTLIGILKAFVAFR 365
            L++   LQS + S NMV    NG      ++  IL+ F   R
Sbjct: 444 GLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFFDLR 486


>gi|323695906|gb|ADX99577.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  L
Sbjct: 1   GQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 161/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 706  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 761

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 762  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 821

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 822  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 877

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 878  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 920

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++         V+++     A      L+
Sbjct: 921  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVNSVVKMTEEKLAQAEAAGLH 979

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 980  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1027

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1028 EWLVGMLGAESTKLNNQARFI 1048


>gi|2564211|emb|CAB17081.1| gyrase A [Acholeplasma laidlawii PG-8A]
          Length = 53

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ARI G+VMGKYHPHG+++IY+A+ RMAQ +S R  L++G GNFGSVDGD  AA
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYNAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAA 53


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 115/260 (44%), Gaps = 29/260 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R+I+F   +  +  + K V+ A    E    YH HG  ++   +  
Sbjct: 683 RSIPSVIDGLKPGQRKIIFSSFKRRLTRSIKVVQLAGYVSE-HAAYH-HGEQSLVQTIVG 740

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQ++  S  + L++  G FG+    G   AA RY   RL   A ++        VD++ 
Sbjct: 741 LAQNFVGSNNVPLLQQDGQFGTRLQGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKD 800

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           + DG   EP       P VLVNG  GI  G ATNIP ++  EV+D               
Sbjct: 801 D-DGLSVEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDN-------------- 845

Query: 216 LMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           LM ++RG +  P      G  G        +G  V  G +++         + +TE+P  
Sbjct: 846 LMRLLRGEEVQPMKPWYFGFAG--TIEEKEKGKFVSTGCANVRPDG----VVQITELPIG 899

Query: 275 VNKAAMLEKIAELVREKRIV 294
                  +K  E +REK +V
Sbjct: 900 TWTQG-YKKFLEELREKEVV 918


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1465

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 155/382 (40%), Gaps = 61/382 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+I+F   +  +    + +K AR +G V     YH HG  ++   +
Sbjct: 724  RSIPSVVDGLKPGQRKIMFSAFKRNL---VRSLKVARFAGYVSEHAAYH-HGEQSLVQTI 779

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+    ++ LL  +GQ       G   AA RY   RL   A  +        V++
Sbjct: 780  VGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYISTRLTDIARRIYHPSDDFIVEY 839

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D             
Sbjct: 840  RDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDN------------ 886

Query: 214  DALMEIIRGPDF-PTGAVILGRTGIKNAYATGR----GSIVIR--GVSHIEKTSGDREQI 266
              L  ++ G +  P      G TG       G+    G   +R  GV HI          
Sbjct: 887  --LNRLLSGEELQPMKPWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHI---------- 934

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVIL 324
              TE+P         +K  E +RE+ IV      +      + V I  E+ R   A   +
Sbjct: 935  --TELPIGT-WTQQYKKFLEDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWVAQGCV 991

Query: 325  NQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             +  R    + + + N++A +  G   +      +LK F   R E   RR ++LL +   
Sbjct: 992  EE--RLQLREYIHATNIIAFDREGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQ--- 1046

Query: 383  RAHVLVGLAIAVANLDEVVRII 404
                   L  A   L+ +VR +
Sbjct: 1047 -------LQRAALKLENMVRFV 1061


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 162/381 (42%), Gaps = 54/381 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 722  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 778  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 837

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++   +D
Sbjct: 838  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEG--LD 893

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 894  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 936

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 937  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 995

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRA 384
            +   LQ+  + N + L       F  +G LK +       +E   +R + Y L     R 
Sbjct: 996  KVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RK 1043

Query: 385  HVLVG-LAIAVANLDEVVRII 404
              LVG L      L+   R I
Sbjct: 1044 EWLVGMLGAESTKLNNQARFI 1064


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 159/380 (41%), Gaps = 52/380 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG A++   +
Sbjct: 749  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKGAQLAGSVAEMSSYH-HGEASLMMTI 804

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 805  INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRF 864

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G +  IP  ++ E V+    ++D  +  
Sbjct: 865  L--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE-P 921

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L  L      P +      +   G      +G  SI+            D   I +TE+P
Sbjct: 922  LPML------PSYKNFKGTIDELGPNQYVISGEVSIL------------DSTTIEITELP 963

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +       E++ E +    EK    I D ++       + V+++     A+     L++
Sbjct: 964  VRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHK 1023

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAH 385
               LQ+  + N + L       F  +G LK + +     +E   +R   Y L     R  
Sbjct: 1024 VFKLQTNLTCNSMVL-------FDHVGFLKKYESPQDILKEFFELRLRYYGL-----RKE 1071

Query: 386  VLVG-LAIAVANLDEVVRII 404
             L+G L    A L+   R I
Sbjct: 1072 WLIGMLGAESAKLNNQARFI 1091


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 158/361 (43%), Gaps = 50/361 (13%)

Query: 30   LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHP 87
            L +  NV   R+IP + DG KP  R IL+   + G   + K VK ++++G V     YH 
Sbjct: 824  LIFFSNVDNDRSIPSMIDGFKPSQRMILYCCFKRGR--HSKEVKVSQLAGYVSENTDYH- 880

Query: 88   HGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL 143
            HG A++  A+  MAQ++  S  + ++   GNFG     G   A+ RY    L   A+++ 
Sbjct: 881  HGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYIFTELHPIANYIF 940

Query: 144  DDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
             +   + + +  NYD   + EP V     P  ++NG  GI  G + N+P HN  +VV   
Sbjct: 941  REEDDEILKY--NYDDDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVPPHNPLDVVANL 998

Query: 203  VAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
              +I+  D +D+       +G            T  KN  AT +   +IRG     K   
Sbjct: 999  KRLINEKDPVDMLPWYNGFKG------------TIEKNPKATNK--YIIRG-----KYCI 1039

Query: 262  DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            D  +I + +IP  VN    +E     + +K          E D Q  + + +   G    
Sbjct: 1040 DGNKIHIEDIPI-VN--GWIEPYESKMEQK----------EDDGQELQKLYKTGVGN--- 1083

Query: 322  VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
              L++    T   S+ ++NM    G   +  ++  +L  F  +R E+  +R ++   K +
Sbjct: 1084 --LDKFLNMTQSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQKRKEFFFLKLQ 1141

Query: 382  D 382
            +
Sbjct: 1142 N 1142


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 159/380 (41%), Gaps = 52/380 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG A++   +
Sbjct: 714  RSIPSLVDGLKPGQRKVLFTCFKRN---DKREVKGAQLAGSVAEMSSYH-HGEASLMMTI 769

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 770  INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRF 829

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G +  IP  ++ E V+    ++D  +  
Sbjct: 830  L--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE-P 886

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L  L      P +      +   G      +G  SI+            D   I +TE+P
Sbjct: 887  LPML------PSYKNFKGTIDELGPNQYVISGEVSIL------------DSTTIEITELP 928

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
             +       E++ E +    EK    I D ++       + V+++     A+     L++
Sbjct: 929  VRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHK 988

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAH 385
               LQ+  + N + L       F  +G LK + +     +E   +R   Y L     R  
Sbjct: 989  VFKLQTNLTCNSMVL-------FDHVGFLKKYESPQDILKEFFELRLRYYGL-----RKE 1036

Query: 386  VLVG-LAIAVANLDEVVRII 404
             L+G L    A L+   R I
Sbjct: 1037 WLIGMLGAESAKLNNQARFI 1056


>gi|67590421|ref|XP_665482.1| DNA topoisomerase II [Cryptosporidium hominis TU502]
 gi|54656191|gb|EAL35251.1| DNA topoisomerase II [Cryptosporidium hominis]
          Length = 1069

 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP+L DGLKP  R++LF   +  +      +K A+++G V     YH HG +++   +
Sbjct: 100 RSIPNLLDGLKPGQRKVLFATFKKKLN---NELKVAQLAGYVAEHSAYH-HGESSLQSTI 155

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++  S  L L+E  G FGS    G   +A RY   +L K   ++  +     + +
Sbjct: 156 VNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLLTY 215

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             + DG   EP+      P +LVNG  GI  G ++++P +N  +++
Sbjct: 216 LYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDII 260


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
            magnipapillata]
          Length = 1323

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 158/382 (41%), Gaps = 47/382 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EKG  +V+  D +    + ++ N    R+IP L DG KP  R++LF  M+     +K+ V
Sbjct: 677  EKGTRTVTYQDFINKELILFS-NTDNERSIPSLVDGFKPGQRKVLFTCMKRN---DKREV 732

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPA 126
            K A+++G V  +  YH HG  ++   +  +AQ++    +L +LL  GQ     V G   A
Sbjct: 733  KVAQLAGSVAELSAYH-HGEMSLMGTIVNLAQNFVGSNNLNVLLPIGQFGTRHVGGKDSA 791

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    +      +  +  KD       +D + + EP   C   P  LVNG  GI  G
Sbjct: 792  SPRYIFTMMSSLTRLVFPE--KDDAVLTYLFDDNQKIEPEWYCPIIPMCLVNGAEGIGTG 849

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T IP  ++ ++V+    +I+  +            P FP+     G          G 
Sbjct: 850  YSTKIPNFDIRDIVENVKRMINGEEPQ----------PMFPSYKDFTGEI-----VQEGD 894

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDE 302
               + +G  +I     D   I +TE+P +    A  E + ++     EK    I D ++ 
Sbjct: 895  QKFICQGTINI----IDETTIEITELPVRTWTQAYKETVLDVYLYGNEKSPPCITDYKEY 950

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG------ 356
                  + VI +            L++   L  L S+N+  +  +  + F  I       
Sbjct: 951  HTDSTVKFVITMTPEQMVKAEEEGLHKKFKL--LSSINLSCMVLF--DEFGCIKKYESPT 1006

Query: 357  -ILKAFVAFREEVVVRRTKYLL 377
             I+KAF   R      R K++L
Sbjct: 1007 EIMKAFFNVRMAKYNERKKFIL 1028


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 167/409 (40%), Gaps = 79/409 (19%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP+L DGLKP  R++LF   +  +      +K A+++G V     YH HG +++   +
Sbjct: 830  RSIPNLLDGLKPGQRKVLFATFKKKLN---NELKVAQLAGYVAEHSAYH-HGESSLQSTI 885

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  L L+E  G FGS    G   +A RY   +L K   ++  +     + +
Sbjct: 886  VNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLLTY 945

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-DID 212
              + DG   EP+      P +LVNG  GI  G ++++P +N  +++     ++     + 
Sbjct: 946  LYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDIIMNLKRMLKGEMMVP 1004

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS------------------IVIRG-- 252
            +    +  +G  FP     + +   KN+ + G G+                  I+I    
Sbjct: 1005 MTPWYKSFKGKIFP-----IKQKSKKNSASNGGGNNNRKKTAINSFNNGSNSSILIGSQV 1059

Query: 253  ------VSHIEKTSG-------------------------DREQIVVTEIPYQVNKAAML 281
                  +  I++T+                          + E +V+TE+P +       
Sbjct: 1060 DAEDDDLQQIQRTNNMGNGIIEETLELGANYETFGNWYKKNEETLVITELPVRRWTQDYK 1119

Query: 282  EKIAELVREKRIVD--------IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            E +   +      D        I D RD S  +   + + ++        +  + +   L
Sbjct: 1120 EWLESTLLPAPNADNDNIENSWIIDYRDNSSHESVHITVRMRPEKLQQAEMEGIEKIFRL 1179

Query: 334  QSLFSVNMVALNGYKPE--RF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
            +S  S + + L  +     R+ T + ILK F+  R E+  +R  YLL+K
Sbjct: 1180 KSTLSTSNMTLFDHNSRIVRYETELDILKEFIPIRLEMYEKRKNYLLSK 1228


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 17/171 (9%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +       K  K A+ SG V     YH HG  ++  
Sbjct: 694 LQRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKIAQFSGYVSEHSAYH-HGEQSLAS 749

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL---DDLGK 148
            +  MAQD+    ++ LLL  GQ       G   A+ RY   RL     FL    DD+  
Sbjct: 750 TIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDILL 809

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D +    N DG   EP       P VLVNG  GI  G +++IP +N  +++
Sbjct: 810 DYL----NEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDII 856


>gi|4691547|gb|AAD27958.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 77

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 3/76 (3%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D
Sbjct: 2   ELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD 61

Query: 122 GDPP--AAERYTECRL 135
            DP   AA RYTE +L
Sbjct: 62  -DPKSFAAMRYTEAKL 76


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 17/171 (9%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +       K  K A+ SG V     YH HG  ++  
Sbjct: 694 LQRSIPSMVDGLKPGQRKILFCSFKRNF---IKEAKIAQFSGYVSEHSAYH-HGEQSLAS 749

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL---DDLGK 148
            +  MAQD+    ++ LLL  GQ       G   A+ RY   RL     FL    DD+  
Sbjct: 750 TIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDILL 809

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D +    N DG   EP       P VLVNG  GI  G +++IP +N  +++
Sbjct: 810 DYL----NEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDII 856


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 156/371 (42%), Gaps = 35/371 (9%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L Y       R+IP++ DG KP  R++L+G  +  +   K   K A++ G +     
Sbjct: 724  NKELIYYSRYDTERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSA 780

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH 140
            YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +A RY   +L     
Sbjct: 781  YH-HGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASCTR 839

Query: 141  FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + ++     + +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++
Sbjct: 840  SIFNEYDDPILKYL-NEEGQKIEPKYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIE 898

Query: 201  GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI-VIRGVSHIEKT 259
                 I+      + L+ +I     P      GR  I++   TG  +I +IR +      
Sbjct: 899  NIKRYINK-----EPLIPMI-----PWYKDFKGR--IESNGKTGFETIGIIRKI------ 940

Query: 260  SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              D E + + E+P +       E + EL+ +++   I D  D S  +     I++     
Sbjct: 941  --DDETLEINELPIKKWTQDYKEFLEELLTDEKNQLILDYIDNSSHEEICFTIKMDPAKL 998

Query: 320  ADVILNQLYRYTSLQSLFSVNMVALNGY--KPERF-TLIGILKAFVAFREEVVVRRTKYL 376
                   L +   L+S  +   + L  Y  K +++ T + ILK F   R      R  YL
Sbjct: 999  RKAEEEGLEKVFKLKSTLTTTNMTLFDYNLKLQKYATELDILKEFCFQRLNAYENRKSYL 1058

Query: 377  LNKARDRAHVL 387
            + K      ++
Sbjct: 1059 IAKLEKEKKII 1069


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 163/383 (42%), Gaps = 63/383 (16%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   +
Sbjct: 683  RSIPSVVDGLKPGQRKIMFSAFKRNL---VRSIKVAQLAGYVSEHAAYH-HGEQSLVQTI 738

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  +  + L+   G FG+    G   AA RY   RL   A  +        VD+
Sbjct: 739  VGLAQDYVGANNIPLLHRDGQFGTRLQGGKDHAAGRYIFTRLTNIARRIYHPSDDFVVDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D             
Sbjct: 799  KDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDN------------ 845

Query: 214  DALMEIIRGPDF-PTGAVILGRTGI-----KNAY-ATGRGSIVIRGVSHIEKTSGDREQI 266
              L  ++ G D  P      G TG      K  + ++GR ++   GV            +
Sbjct: 846  --LRRLLSGDDLRPMKPWYFGFTGTIEEREKGKFVSSGRYTVRPDGV------------V 891

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE---LKRGASADVI 323
             +TE+P      +  +K  E +RE+ +V      +      + V I    L++  +   +
Sbjct: 892  CITELPIGT-WTSQYKKFLEDLREREVVVQYREHNTDVTVDFEVFIHPEVLQQWTNQGCL 950

Query: 324  LNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
             ++L      + + + N++A +  G   +      +LK F   R E   RR ++LL +  
Sbjct: 951  EDKL---QLREYIHATNIIAFDREGRITKYLDAESVLKEFYLVRLEYYARRREFLLEQ-- 1005

Query: 382  DRAHVLVGLAIAVANLDEVVRII 404
                    L  +V  L+ +VR +
Sbjct: 1006 --------LQRSVLKLENMVRFV 1020


>gi|402872|gb|AAA21849.1| DNA gyrase subunit A [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 195

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 56/185 (30%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +++ TK GQ V FPIS  R   GR + GV+GI+LA+GD+VIS              + ++
Sbjct: 3   LMIATKNGQAVTFPISCFRAM-GRGTHGVKGITLAEGDEVIS--------------LLWL 47

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K                          GN               ILT++EKG+GKR+   
Sbjct: 48  KA-------------------------GN--------------KILTITEKGYGKRSEPG 68

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            +R++ R  KG+R  +V+  ++IGA V V  V D+  +I+ S  G +IR+   +IR+  R
Sbjct: 69  SYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAADIRLTGR 126

Query: 876 ATKGV 880
             +GV
Sbjct: 127 NAQGV 131


>gi|294637121|ref|ZP_06715432.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
 gi|291089692|gb|EFE22253.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
          Length = 159

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 74/111 (66%), Gaps = 4/111 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILTV++ G+GKR++  ++   +R+ +G+ +  V++ N  G +V    ++D DQI+++
Sbjct: 23  EGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTERN--GRVVGAVQIDDGDQIMMI 80

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E   VD+ E
Sbjct: 81  TDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEP--VDDEE 129


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 158/377 (41%), Gaps = 40/377 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   SVS TD   N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 692  KDTKSVSYTD-FVNLELVLFSNADNIRSIPCLVDGLKPGQRKVMFTCFKRN---DKREVK 747

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 748  VAQLAGSVAEMSAYH-HGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSAS 806

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   ++      + +    D +      D    EPV      P VLVNG  GI  G  
Sbjct: 807  PRYIFTKMSPLTRMIFNP-SDDYLLKHEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWM 865

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  E+V    A++D  +               PT  V   +  I +    G   
Sbjct: 866  TKIPNYNPRELVKNIRAMLDQEE---------------PTNMVPWYKNFIGSIVDCGDNR 910

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESD 304
             V  G   I    GD  ++ +TE+P         E + E +    EK    I D ++ + 
Sbjct: 911  YVASGEIAI---IGDN-RVEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNT 966

Query: 305  RQGYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVNMVALN---GYKPERFTLIGILK 359
                + +I    G   + + N+  L++   LQSL S + + +    G      ++  ILK
Sbjct: 967  DTTVKFIITFLPG-QLETLENEAGLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDILK 1025

Query: 360  AFVAFREEVVVRRTKYL 376
             +   R  +  +R  YL
Sbjct: 1026 DYYKLRLTMYQKRKDYL 1042


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 172/414 (41%), Gaps = 56/414 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +  +
Sbjct: 646  VNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFKRNL 704

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 705  VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 762

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY   RL + +  +        V+++ + DG   EP       P VLVNG  G
Sbjct: 763  GKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTG 821

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD-FPTGAVILGRTGIKNA 240
            I  G +T+IP +N  E++                L  ++RG +         G TG    
Sbjct: 822  IGTGFSTSIPNYNPLEIISN--------------LERLMRGEEVHKMQPWYFGFTGTMEE 867

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G      + VSH          + +TE+P  V   A  +K  E +REK +V     R
Sbjct: 868  KEPG------KFVSHGRYEIRPDGVVCITELPIGVWTQA-YKKFLEDMREKELV--VQYR 918

Query: 301  DES-----DRQGYRVVIELKRGASADVILN--QLYRYTSLQSLFSVNMVALN--GYKPER 351
            + +     D + +     L++  S DV+    QL  Y     + + N++A N  G   + 
Sbjct: 919  EHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEY-----VHATNIIAFNKEGQITKY 973

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                 +LK F   R +   +R +YLL + R             + L+ +VR +R
Sbjct: 974  SDAESVLKEFYLVRLDYYAKRKQYLLGELRR----------LTSKLENMVRFVR 1017


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 158/377 (41%), Gaps = 40/377 (10%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   SVS TD   N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 692  KDTKSVSYTD-FVNLELVLFSNADNIRSIPCLVDGLKPGQRKVMFTCFKRN---DKREVK 747

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 748  VAQLAGSVAEMSAYH-HGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSAS 806

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   ++      + +    D +      D    EPV      P VLVNG  GI  G  
Sbjct: 807  PRYIFTKMSPLTRMIFNP-SDDYLLKHEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWM 865

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  E+V    A++D  +               PT  V   +  I +    G   
Sbjct: 866  TKIPNYNPRELVKNIRAMLDQEE---------------PTNMVPWYKNFIGSIVDCGDNR 910

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESD 304
             V  G   I    GD  ++ +TE+P         E + E +    EK    I D ++ + 
Sbjct: 911  YVASGEIAI---IGDN-RVEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNT 966

Query: 305  RQGYRVVIELKRGASADVILNQ--LYRYTSLQSLFSVNMVALN---GYKPERFTLIGILK 359
                + +I    G   + + N+  L++   LQSL S + + +    G      ++  ILK
Sbjct: 967  DTTVKFIITFLPG-QLETLENEAGLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDILK 1025

Query: 360  AFVAFREEVVVRRTKYL 376
             +   R  +  +R  YL
Sbjct: 1026 DYYKLRLTMYQKRKDYL 1042


>gi|120969678|gb|ABM45913.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           KYHPHG+ A+Y+ + RMAQD+++R +L++GQGNFGS+DG   AA RYTE R+ K
Sbjct: 1   KYHPHGDTAVYNTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAK 54


>gi|313600330|gb|ADR71661.1| topoisomerase IV subunit [Salmonella sp. ES-B43]
          Length = 83

 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 3/83 (3%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHP G+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPRGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP--AAERYTECRLQKAAHFL 142
            DP   AA RYTE RL K +  L
Sbjct: 62  -DPKSFAAMRYTESRLSKYSELL 83


>gi|49425333|gb|AAT66027.1| DNA topoisomerase IV subunit A [Corynebacterium jeikeium]
          Length = 58

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 45/57 (78%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           +V G YHP+G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L+
Sbjct: 1   DVAGPYHPNGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLR 57


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP + DG KP  R++LFG ++  +       K A+++G V     YH HG A++   +
Sbjct: 680 RSIPSVVDGWKPGQRKVLFGCLKRNLVGE---CKVAQLTGYVAEHSAYH-HGEASLQQTI 735

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++  S  + ++E  G FGS    G   +A RY   +L      +  +   + +++
Sbjct: 736 INMAQNFVGSNNINVLEPCGQFGSRKEGGKDASAARYIFTKLNPITRLIFVEEDDNILEY 795

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           + N +G   EP+      P VLVNG  GI  G ++ IP +N  +++D     ++N D+
Sbjct: 796 Q-NEEGQTIEPMYYIPTIPMVLVNGSEGIGTGFSSQIPNYNPLDIIDNLKRYLNNVDM 852


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
           topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
           DNA-dependent ATPase [Arabidopsis thaliana]
          Length = 1438

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +   +  +K +K A++ G V  +  YH HG  ++  
Sbjct: 700 LQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQLVGYVSLLSAYH-HGEQSLAS 755

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+  MAQD+    ++ LLL  GQ    +  G   A+ RY   +L      L        +
Sbjct: 756 AIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLL 815

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D+  N DG   EP       P VLVNG  GI  G +T IP +N  E+V
Sbjct: 816 DYL-NEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIV 862


>gi|218677322|ref|ZP_03525219.1| DNA topoisomerase IV subunit A [Rhizobium etli CIAT 894]
          Length = 78

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 50/72 (69%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M +MG+     +
Sbjct: 7  DDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAF 66

Query: 72 VKCARISGEVMG 83
           KCA+I GEVMG
Sbjct: 67 KKCAKIVGEVMG 78


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 162/377 (42%), Gaps = 42/377 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 712  RSIPCMVDGLKPGQRKVVFCCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEVSLMMTI 767

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + +
Sbjct: 768  VGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKY 827

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              NYD   + EP       P VL NGG GI  G A+ IP +++ E+++    +I+     
Sbjct: 828  --NYDDYLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMING---- 881

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
             +  + ++  P +      +     KN Y    G + I   + IE T    E  V T  P
Sbjct: 882  -EEPLPMVNLPSYKGFKGTIDELA-KNQYVNN-GEVAIIDSTTIEIT----ELPVKTWTP 934

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
                K  +LE +     EK    I D ++       R V+++      +     L++   
Sbjct: 935  GLTYKENVLEVMLNGT-EKVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGLHKVFK 993

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAHVLV 388
            LQ+L + N + L       F  +G LK + +     +E   +R   Y+L     R   LV
Sbjct: 994  LQNLLTCNSMVL-------FDHVGSLKKYESVQDILKEFFELRMKYYVL-----RKDWLV 1041

Query: 389  G-LAIAVANLDEVVRII 404
            G L    A L    R I
Sbjct: 1042 GMLGAESAKLSNQARFI 1058


>gi|323695908|gb|ADX99578.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
 gi|323695910|gb|ADX99579.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  L
Sbjct: 1   GQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 159/383 (41%), Gaps = 59/383 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +
Sbjct: 729  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL---DDLGKDT 150
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A       D+L K  
Sbjct: 785  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLFPAVDDNLLKFL 844

Query: 151  VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
             D     D    EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   
Sbjct: 845  YD-----DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG-- 897

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            +D   ++     P++      +   G +N YA      V+           DR  + +TE
Sbjct: 898  LDPHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITE 940

Query: 271  IP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            +P     QV K  +LE +     +K    I+D ++       + V+++     A      
Sbjct: 941  LPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAG 999

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARD 382
            L++   LQ+  + N + L       F  +G LK +       +E   +R + Y L     
Sbjct: 1000 LHKVFKLQTTLTCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL----- 1047

Query: 383  RAHVLVG-LAIAVANLDEVVRII 404
            R   LVG L      L+   R I
Sbjct: 1048 RKEWLVGMLGAESTKLNNQARFI 1070


>gi|270650935|ref|ZP_06222222.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270317177|gb|EFA28783.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 157

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 28/184 (15%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  +A+R   GR + GVRGI LA           L  D   DE    + 
Sbjct: 1   MLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA-----------LTNDISDDESAVEI- 47

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                        EEI+    ++S++ NI +     +   E  ILT ++ G+GKRT   +
Sbjct: 48  -------------EEISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSE 94

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +   +R+ KG+ +  VS+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R 
Sbjct: 95  YPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRN 152

Query: 877 TKGV 880
           T+GV
Sbjct: 153 TQGV 156


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 160/381 (41%), Gaps = 47/381 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D + N  L    N    R+IP++ DGLKP  R++LF   +     +K+ V
Sbjct: 680  EKDTRAVSFSDFI-NVELVLFSNYDNIRSIPNMMDGLKPGQRKVLFTCFKRN---DKREV 735

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A++   V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 736  KVAQLGASVAEHSAYH-HGEMSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSA 794

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++      D    +  YD + + EP       P VLVNG  GI  G
Sbjct: 795  SPRYIFTMLSPLARYIFHK--HDDPLLKHEYDDNQKIEPTYYVPIIPMVLVNGADGIGTG 852

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    ++D  D               P         G   +    R
Sbjct: 853  WMTKIPNYNPREIIENLQRMMDGADPR-------------PMSPFYKNFKGTIESCGDYR 899

Query: 246  ----GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIAD 298
                G I I G   +E          +TE+P      A  E + E +    +K    I D
Sbjct: 900  YVISGEISIIGPDKVE----------ITELPIGTWTQAYKETVLEPMLHGSDKTPPVITD 949

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVAL-NGYKPERF-TLI 355
             ++ +       V+ L+R   A++  + L++   LQ+  S+ +M A  +    ++F  + 
Sbjct: 950  YKEYNTDTMVHFVVTLQRDKLAELERDGLHKAFKLQTTTSITSMCAFDDNLCLKKFDNVC 1009

Query: 356  GILKAFVAFREEVVVRRTKYL 376
             I++ F   R ++  +R  YL
Sbjct: 1010 QIMRTFFTVRLDLYQKRKDYL 1030


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
           topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
           DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
          Length = 1473

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +   +  +K +K A++ G V  +  YH HG  ++  
Sbjct: 700 LQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQLVGYVSLLSAYH-HGEQSLAS 755

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+  MAQD+    ++ LLL  GQ    +  G   A+ RY   +L      L        +
Sbjct: 756 AIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLL 815

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D+  N DG   EP       P VLVNG  GI  G +T IP +N  E+V
Sbjct: 816 DYL-NEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIV 862


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 14/204 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  D    +   S+S  D   N  L    N    R+IP L DGLKP  R++LF   +
Sbjct: 664 EHNLPEDYLYGQATKSLSYND-FVNKELVLFSNSDNERSIPCLVDGLKPGQRKVLFCCFK 722

Query: 63  MGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG 118
                +K+ VK A+++G V  M  YH HG  ++   +  +AQ++  S  + L++  G FG
Sbjct: 723 RN---DKREVKVAQLAGSVAEMSAYH-HGEVSLMMTIVGLAQNFVGSNNMNLLQPLGQFG 778

Query: 119 S--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVL 175
           +    G   A+ RY    L   A  +   +  + + +  NYD + + EP       P VL
Sbjct: 779 TRLHGGKDSASPRYIFTMLSPLARLVFPSVDDNLLKY--NYDDNQRVEPEWYMPIIPTVL 836

Query: 176 VNGGGGIAVGMATNIPTHNLGEVV 199
           VNG  GI  G A+ IP +N+ E+V
Sbjct: 837 VNGAEGIGTGWASKIPNYNIREIV 860


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1645

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 166/400 (41%), Gaps = 64/400 (16%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP++ DGLKP  R++L+ + +  +      +K A+++G V     YH HG A++   
Sbjct: 825  ARSIPNVIDGLKPGQRKVLYSVFKKKLN---NEMKVAQLAGYVAEHSAYH-HGEASLQST 880

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQD+  S  L L++  G FGS    G   +A RY   +L     ++  +   D + 
Sbjct: 881  IVNMAQDFVGSNNLNLLQPCGQFGSRKEGGKDASAARYIFTKLSTWTRYIFPE-ADDPLL 939

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV-AVIDNPDI 211
                 DG   EP+      P VLVNG  GI  G + ++P +N  ++++    A+  +  +
Sbjct: 940  IYLQDDGQQIEPLFYVPIIPMVLVNGADGIGTGWSCSVPNYNPKDIINNLKRALRGDIMM 999

Query: 212  DLDALMEIIRGPDFPTG-------------AVILGRTGIKNAYATGRGSIVIRGVSHIE- 257
             +       +G   P                V L    I  ++  G  S  I G S  E 
Sbjct: 1000 PMTPWYRSFKGKVTPIKQKNRKNLSKRKNLTVKLQDNNIDISHNNGTVSHTITGCSQSEL 1059

Query: 258  ---------------------KTSG-----DREQIVVTEIP---YQVNKAAMLEK--IAE 286
                                 +T G     D E +++TE+P   +  +    LE   +  
Sbjct: 1060 DEDHVILTIDPDDNLELGANYETFGNWYRKDDETLIITELPVRRWTQDYKEWLESTLLPP 1119

Query: 287  L-VREKRIVD---IADLRDESDRQGYRVVIELKRGA---SADVILNQLYRYTSLQSLFSV 339
            L   E   +D   I D RD S      + I +K      + +  + ++++  S  S  ++
Sbjct: 1120 LNTPEGDDIDHSWIMDYRDNSSHDSVHITIRIKPDKFIQAENEGIEKVFKLKSTLSTSNM 1179

Query: 340  NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             +   N +     T + ILK F+  R ++  +R +YLL+K
Sbjct: 1180 TLFDNNSHIVRYETELDILKEFIPTRLQMYEKRKRYLLSK 1219


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 30/348 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK VK   ++G V G   + HG A++   + 
Sbjct: 822  RSIPSVIDGLKPGQRKVLYTCFRRNI---KKDVKVVELAGSVSGSTDYAHGEASMQGTIV 878

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  +  +  +E  GNFGS    G   A+ RY   RL   A  +    G D    +
Sbjct: 879  NLAQNFVGTNNINFLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFH--GHDDALLK 936

Query: 155  -PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                DG   EP +     P +L+NG  GI  G ++ IP  N  ++++     +  P    
Sbjct: 937  YGESDGHKIEPEMFVPILPTILINGSSGIGTGWSSEIPNFNPMDIIENIKRRM-QPGATK 995

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
            + +  +I            G TG        R        +   + +GD E + +TE+P 
Sbjct: 996  EDMTPMI--------PWYKGFTGTTTELGPDRYQF-----TGTVRQTGDNE-VEITELPV 1041

Query: 274  QVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       EK+ E+++ EK    I D  D +       +I+++    A+ +   L  Y  
Sbjct: 1042 RYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVHFIIKMEDKYMAEAVTKGLEEYFK 1101

Query: 333  L-QSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLL 377
            L +   + N+VA + + +  ++ T++ I++ F   R     +R ++ L
Sbjct: 1102 LFKPQSTSNLVAFDAHGRIHKYATVLDIIEEFYHVRLRYYEKRKQHQL 1149


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 38/351 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++++GM +  +   K   K  +++G +  +  YH HG  ++   +
Sbjct: 741  RSIPSVVDGLKPGQRKVIYGMFKKNL---KNEAKVEQLAGYISEQTAYH-HGETSLQQTI 796

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS-VDGDPPAAE-RYTECRLQKAAHFLLDDLGKDTV 151
              +A ++    ++ LLL +GQ  FGS ++G   AA+ RY      + A  L D      +
Sbjct: 797  IGLAHNFVGSNNINLLLPKGQ--FGSRIEGGKDAAQPRYIFTMPSRMARLLFDKRDDPIL 854

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++  N +G + EP       P +LVNG  GI  G +T IP  N  ++V     +I N  +
Sbjct: 855  NYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPNFNPSDLVKNIRHLIKNEPL 913

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +             P      G  G        R    + G+  IE+ S D   + +TE+
Sbjct: 914  E-------------PMHPWYRGFKGTIQQMTPDR--YKVSGI--IEQVSDD--TVDITEL 954

Query: 272  PYQVNKAAMLEKIAELV-REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL-YR 329
            P ++    M E +  L+  +K+   I D  +    +     ++L +   A  +   L  +
Sbjct: 955  PVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHFRVKLTKEGMATALAEGLENK 1014

Query: 330  YTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +   ++L + NMVA +  G   +  +   ILK F   R     RR ++L+N
Sbjct: 1015 FKVARTLATSNMVAFDPQGRIRKYDSAYDILKEFYEVRLRYYQRRKEHLVN 1065


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 153/348 (43%), Gaps = 30/348 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALA 98
            R+IP + DGLKP  R++L+   +  +   KK VK   ++G V G   + HG A++   + 
Sbjct: 820  RSIPSVIDGLKPGQRKVLYTCFRRNI---KKDVKVVELAGSVSGSTDYAHGEASMQGTIV 876

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  +  +  +E  GNFGS    G   A+ RY   RL   A  +    G D    +
Sbjct: 877  NLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFH--GHDDALLK 934

Query: 155  -PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                DG   EP +     P +L+NG  GI  G ++ IP  N  +++      ++ P    
Sbjct: 935  YGESDGHKIEPEMFVPILPTILINGSSGIGTGWSSEIPNFNPMDIIANIRRRME-PGATK 993

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
            D +  +I            G TG        R        +   + +GD E + +TE+P 
Sbjct: 994  DDMTPMI--------PWYKGFTGTTTEIGPDRYQF-----TGTVRQTGDNE-VEITELPV 1039

Query: 274  QVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       EK+ E+++ EK    I D  D +       +I+++    A+ +   L  Y  
Sbjct: 1040 RYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVHFIIKMEDKYMAEAVTKGLEEYFK 1099

Query: 333  L-QSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLL 377
            L +   + N+VA + + +  ++ T++ I++ F   R     +R ++ L
Sbjct: 1100 LFKPQSTSNLVAFDAHGRIHKYATVLDIIEEFYHIRLRYYEKRKQHQL 1147


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 145/333 (43%), Gaps = 44/333 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG   +   +
Sbjct: 732  RSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEVTLMMTI 787

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F
Sbjct: 788  VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 847

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D
Sbjct: 848  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LD 903

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               ++     P++      +   G +N YA      V+           DR  + +TE+P
Sbjct: 904  PHPML-----PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELP 946

Query: 273  ----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                 QV K  +LE +     +K    I+D ++       + V+++     A      L+
Sbjct: 947  VRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLH 1005

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            +   LQ+  + N + L       F  +G LK +
Sbjct: 1006 KVFKLQTTLTCNSMVL-------FDHMGCLKKY 1031


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 172/414 (41%), Gaps = 56/414 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +  +
Sbjct: 646  VNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFKRNL 704

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 705  VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 762

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY   RL + A  +        V+++ + DG   EP       P VLVNG  G
Sbjct: 763  GKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTG 821

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD-FPTGAVILGRTGIKNA 240
            I  G +T+IP +N  E++                L  ++RG +         G TG    
Sbjct: 822  IGTGFSTSIPNYNPLEIISN--------------LERLMRGEEVHKMQPWYFGFTGTMEE 867

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G      + +SH          + +TE+P  V   A  +K  E +REK +V     R
Sbjct: 868  KEPG------KFISHGRYEIRPDGVVCITELPIGVWTQA-YKKFLEDMREKELV--VQYR 918

Query: 301  DES-----DRQGYRVVIELKRGASADVILN--QLYRYTSLQSLFSVNMVALN--GYKPER 351
            + +     D + +     L++  + DV+    QL  Y     + + N++A N  G   + 
Sbjct: 919  EHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEY-----VHATNIIAFNKEGQITKY 973

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                 +LK F   R +   +R +YLL + R             + L+ +VR +R
Sbjct: 974  SDAESVLKEFYLVRLDYYAKRKQYLLGELRR----------LTSKLENMVRFVR 1017


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 168/384 (43%), Gaps = 47/384 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +  +   KK +K A+++G V     YH HG  ++   +
Sbjct: 714  RSIPSVVDGLKPSQRKVLFACFKRKL---KKEIKVAQLAGYVSEHAAYH-HGEMSLTGTI 769

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAH--FLLDDLGKDTV 151
              MAQD+  S  + L+   G FG+  + G   A+ RY   +L+  A   F  DD      
Sbjct: 770  VGMAQDFVGSNNVNLLTPAGQFGTRIMGGKDAASSRYIFTKLEAVARKVFHPDD------ 823

Query: 152  DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            DF  +Y   DG   EP       P  L NG  GI  G AT++P +    ++ G +  + +
Sbjct: 824  DFVLDYLEDDGQSIEPTYYVPVLPFALCNGADGIGTGWATSVPNYAPRALI-GVLRRMID 882

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
             D+    L    RG     G  I+ + G KNA     G+  + G      T  D   ++V
Sbjct: 883  ADVGAADLAPHYRG----FGGDIVAKGG-KNA-----GAFAVLG----RATRLDDVTVLV 928

Query: 269  TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA---SADVILN 325
             E+P+  +    LE +     +K    + D ++          + + +G     A+  L 
Sbjct: 929  DELPWTHDYKQWLE-VQLSGDDKTKAWVKDFKENHTDTRVSFTVTVTKGEDLDDAEAALG 987

Query: 326  QLYRYTSLQ-SLFSVNMVALN--GYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKAR 381
             L +   L+ SL + NM   +  G   +++     ++KAF   R     +R  +L+   R
Sbjct: 988  GLEKKFKLEGSLATSNMNFFDDTGLVIDKYDAPFDVIKAFYKVRVATYAKRKAHLVKAKR 1047

Query: 382  DRAHVL---VGLAIAVANLDEVVR 402
             R  +L   V   ++V + D VV+
Sbjct: 1048 ARVSLLRNKVRFVLSVLSGDLVVQ 1071


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 162/377 (42%), Gaps = 45/377 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DG KP  R++L+G  +  +   K  +K  +++G V     YH HG  ++   +
Sbjct: 734  RSIPSVLDGFKPGQRKVLYGCFKRNL---KSEIKVNQLAGYVSENTGYH-HGEQSLVQTI 789

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  S  L +++  G+FGS    G   +A RY    + +    + + L      +
Sbjct: 790  IGLAQDFIGSNNLNILKPNGSFGSRAAGGKDFSAPRYIFTEINEITRKIFNPLDNALYKY 849

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + D    EP       P +LVNG  GI  G +TN+P  N  ++V+    +++    ++
Sbjct: 850  VQD-DEQTVEPEWYLPVLPMLLVNGSEGIGTGWSTNVPPFNPTDIVNNIKKLMNGE--EM 906

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
            + +    RG +   G ++              G    R +  IE+T  D  ++ +TEIP 
Sbjct: 907  NEMSPWYRGWE---GEIV------------ANGKDRFRVIGRIEQT--DETEVEITEIPV 949

Query: 274  QVNKAAMLEKIAE-LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI-LNQLYRYT 331
            +     M E +   L  EK    I D+ +E      R V++L     A  + +  L R+ 
Sbjct: 950  KTWTNNMKEFLLNGLGTEKVKPWIKDM-EEQHGMNIRFVVKLSADEMAKSLKVGLLERFN 1008

Query: 332  SLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
             + S+   NMVA +  G   +  + + I++ F   R E   RR          + H+   
Sbjct: 1009 LISSVSLTNMVAFDPMGKIKKYESPLEIMRDFYYVRLEYYQRR----------KDHITDE 1058

Query: 390  LAIAVANLDEVVRIIRF 406
            +   +  L E  R I+ 
Sbjct: 1059 MQHQLTKLSEQARFIKL 1075


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 158/383 (41%), Gaps = 51/383 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK    VS  D   N  L    N+   R+IP L DG KP  R++LF  ++     +KK +
Sbjct: 702  EKDTKRVSYRD-FVNKELVLFSNMDNERSIPSLMDGFKPGQRKVLFTCIKRN---DKKEI 757

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDP 124
            K A+++G V     YH HG A++   +  +AQD+    ++ LLL  GQ  FG+    G  
Sbjct: 758  KVAQLAGSVAEHSAYH-HGEASLMGTIIGLAQDFVGSNNINLLLPNGQ--FGTRLQGGKD 814

Query: 125  PAAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             A+ RY    + K    +     D L K  +D     +  +  P++     P +LVNG  
Sbjct: 815  AASPRYIFTLMSKLTRIIFHPHDDPLLKHQMDDNQRIEPEYYAPII-----PMILVNGTD 869

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI  G  T I  +N  EVV     ++D  + I +D   +  RG         + R   ++
Sbjct: 870  GIGTGWMTKILNYNPREVVANVKRMLDGEEPIPMDPWFKGYRG--------TIERID-RH 920

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
             YA      V+ G            ++ +TE+P +V      E + E +    EK    I
Sbjct: 921  RYAISGELAVLSGT-----------EMEITELPLRVWTQNYKESVMETLLHGSEKIPPLI 969

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFT 353
             D ++       R ++ +            L++   LQ+  S+  + L   NG      T
Sbjct: 970  TDYKEYHTDTTVRFIVTMSEEKMQQAEAEGLHKAFKLQTTHSLTSMVLYDSNGCLKMYDT 1029

Query: 354  LIGILKAFVAFREEVVVRRTKYL 376
            +  ILK F   R     +R  YL
Sbjct: 1030 VEDILKEFFTVRLGYYGKRKDYL 1052


>gi|269967071|ref|ZP_06181139.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828330|gb|EEZ82596.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 205

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 55/182 (30%)

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG+ LA+ DQV+S+ +  H                                  
Sbjct: 38  GRTASGVRGMKLAENDQVVSLIVPSH---------------------------------- 63

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               EG+I               LTV+E G+GKRT+  ++    R  +G+ +  VS+ N 
Sbjct: 64  ----EGDI---------------LTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERN- 103

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI
Sbjct: 104 -GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAEDESVVGLQRI 162

Query: 898 RE 899
            E
Sbjct: 163 EE 164


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 12/200 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           KG   VS +D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 685 KGTKQVSYSDFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 740

Query: 74  CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A++SG V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 741 VAQLSGSVAEMSAYH-HGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCAS 799

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY    +      +   L    + ++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 800 ARYIFTLMSPLTRLIYHPLDDPLLQYQTD-DGQRIEPLWYIPIIPMVLVNGAEGIGTGWS 858

Query: 188 TNIPTHNLGEVVDGCVAVID 207
           T I  +N  E+++    +I+
Sbjct: 859 TKIANYNPRELINNLRRMIN 878


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 151/353 (42%), Gaps = 35/353 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP   DGLKP  R++++ M       +   +K   + G V+G+  YH HG AA+   +
Sbjct: 785  RSIPSAIDGLKPGQRKVMYVMFDRK---SNSELKVNTLVGNVLGQAAYH-HGEAALSMTI 840

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+E +G FG+  + G   A+ RY    L K A  L        +D+
Sbjct: 841  VGLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAASGRYIFTALPKIARALFPATDDALLDY 900

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VL+NG  GI  G +T++P +N  E+V      +   D+  
Sbjct: 901  LED-DGQKVEPHWYIPVVPQVLLNGAEGIGTGWSTSVPNYNPHEIVANLRRRMAGEDV-- 957

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                        P      G  G    +  GR  I  R V+ I     D +   +TE+P 
Sbjct: 958  -----------VPMKPWYRGFNGDVEEFGPGRFKISGR-VTQI-----DEKTYEITELPI 1000

Query: 274  QVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +   +   E + E +   +K    I D ++         ++EL     A++    +  + 
Sbjct: 1001 RTWTSNYKELLEERIVSSDKIPATIKDYKEYHTESTVNFIVELTAKGQAEIADKGVEAFF 1060

Query: 332  SLQSLFS-VNMVALN-GYKPERFTLI-GILKAFVAFREEVVVRRTKYLLNKAR 381
             L    S  NMV  +   K +++T    IL+ F   R     +R +YL+++ +
Sbjct: 1061 KLSCQISTTNMVLFDQDGKIKKYTSAEEILEEFYLLRLSYYQKRKEYLVDQLK 1113


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 156/382 (40%), Gaps = 61/382 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   +
Sbjct: 683  RSIPSVVDGLKPGQRKIMFSAFKRNL---VRSLKVAQLAGYVSEHAAYH-HGEQSLVQTI 738

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+    ++ LL  +GQ       G   AA RY   RL   A  +        V++
Sbjct: 739  VGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D             
Sbjct: 799  RDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDN------------ 845

Query: 214  DALMEIIRGPDF-PTGAVILGRTGIKNAYATGR----GSIVIR--GVSHIEKTSGDREQI 266
              L  ++ G +  P      G TG       G+    G   +R  GV HI          
Sbjct: 846  --LNRLLSGEELQPMKPWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHI---------- 893

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVIL 324
              TE+P         +K  E +RE+ IV      +      + V I  E+ R   A   +
Sbjct: 894  --TELPIGT-WTQQYKKFLEDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWVAQGCV 950

Query: 325  NQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             +  R    + + + N++A +  G   +      +LK F   R E   RR ++LL +   
Sbjct: 951  EE--RLQLREYIHATNIIAFDREGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQ--- 1005

Query: 383  RAHVLVGLAIAVANLDEVVRII 404
                   L  A   L+ +VR +
Sbjct: 1006 -------LQRAALKLENMVRFV 1020


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            SYLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 690  SYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 746

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 747  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 805

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L     KD    R  YD + + EP       P VL+NG  GI  G +  I
Sbjct: 806  FTMLSPLARLLFPP--KDDHTLRFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 863

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 864  PNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQYVIN-GEV 912

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 913  AILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + VI++     A+     L++   LQS  + N + L    G   +  T++ IL+ F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1022

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1023 ELRLKYYGLRKEWLL 1037


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 155/368 (42%), Gaps = 54/368 (14%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
           L R+I  + DGLKP  R++L+      +      +K A+++  V  K  YH HG  ++ D
Sbjct: 659 LKRSIAHVSDGLKPSQRKVLYACFTKNLT---SEMKVAQLAAYVSEKTSYH-HGEVSLAD 714

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            + ++A ++  S  + L+E  G FG+  + G   +  RY   +L K+A  L D      +
Sbjct: 715 TIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQTRYIFTKLTKSARILFDPKDDPVL 774

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           ++  + DG   EP       P VLVNG  GI  G ++ IP  N  ++      +I+  ++
Sbjct: 775 NYLDD-DGKQIEPDYYVPILPTVLVNGTEGIGTGFSSYIPPFNPSDIKHNIERIINGENV 833

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      P  P      GR      ++   G  +  GV    K+SG  + ++VTE+
Sbjct: 834 I----------PMKPWFDKFTGR-----VFSNEDGLWITEGV---WKSSG--KSVIVTEL 873

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P         E +  L+ +K+I +  +    +D   + +      G + + I+       
Sbjct: 874 PPGRWTQDYKEYLDTLIEKKKITNYVN-NSTTDDVNFSI-----EGYTGNDIIKDF---- 923

Query: 332 SLQSLFSV-NMVALNGYK-------PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            LQ  F V NM   +  K       PE      IL  FV  R E   +R  +L+   +++
Sbjct: 924 KLQKTFHVSNMHLFHPTKGIHKYESPEE-----ILTDFVKIRSETYKKRKTHLICVLKEK 978

Query: 384 AHVLVGLA 391
              L  ++
Sbjct: 979 TKKLENMS 986


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           RAIP L DGLKP  R++L+   +  +   K  +K +++SG V  K  YH HG A++   +
Sbjct: 756 RAIPSLMDGLKPGQRKVLYACFKRNL---KSKLKVSQLSGYVSDKAAYH-HGEASLNGTI 811

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ +  S  + L+   G FGS    G   +A RY    L   A +L  +     + +
Sbjct: 812 VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQY 871

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           + + DG   EP       P VL+NG  GI  G +T IP
Sbjct: 872 KED-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 908


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 161/379 (42%), Gaps = 43/379 (11%)

Query: 15   GITSVSIT-DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G T++ +T ++  N  L    N    R+IP + DGLKP  R++LF   +     +K+ VK
Sbjct: 686  GQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVK 742

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+
Sbjct: 743  VAQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSAS 801

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGM 186
             RY    L   A  L     KD    R  YD + + EP       P VL+NG  GI  G 
Sbjct: 802  PRYIFTMLSPLARLLFP--SKDDHTLRFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGW 859

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATG 244
            +  IP  ++ EVV+    ++D  +            P  P+     G       N Y   
Sbjct: 860  SCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQYVIN 909

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRD 301
             G + I   + IE          +TE+P +       E++ E +    EK    I D R+
Sbjct: 910  -GEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYRE 958

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGIL 358
                   + VI++     A+     L++   LQ+  + N + L    G   +  T++ IL
Sbjct: 959  YHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDIL 1018

Query: 359  KAFVAFREEVVVRRTKYLL 377
            + F   R +    R ++LL
Sbjct: 1019 RDFFELRLKYYGLRKEWLL 1037


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 161/379 (42%), Gaps = 43/379 (11%)

Query: 15   GITSVSIT-DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G T++ +T ++  N  L    N    R+IP + DGLKP  R++LF   +     +K+ VK
Sbjct: 685  GQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVK 741

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+
Sbjct: 742  VAQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSAS 800

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGM 186
             RY    L   A  L     KD    R  YD + + EP       P VL+NG  GI  G 
Sbjct: 801  PRYIFTMLSPLARLLFP--SKDDHTLRFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGW 858

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATG 244
            +  IP  ++ EVV+    ++D  +            P  P+     G       N Y   
Sbjct: 859  SCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQYVIN 908

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRD 301
             G + I   + IE          +TE+P +       E++ E +    EK    I D R+
Sbjct: 909  -GEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYRE 957

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGIL 358
                   + VI++     A+     L++   LQ+  + N + L    G   +  T++ IL
Sbjct: 958  YHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDIL 1017

Query: 359  KAFVAFREEVVVRRTKYLL 377
            + F   R +    R ++LL
Sbjct: 1018 RDFFELRLKYYGLRKEWLL 1036


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 16/198 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ + S+S  D +    + ++ +    R+IP + DGLKP  R++L+  ++  +    K +
Sbjct: 648 DQDVDSISYEDFVHKELILFSYDDC-ERSIPSVVDGLKPSQRKVLWTCLEKNI---MKEL 703

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV--DGDP 124
           K +++SG V  K  YH HG  ++   +  MAQ++    ++  LL  GQ  FGS    G  
Sbjct: 704 KVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQ--FGSRLGGGKD 760

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY   RL   + +L        +++  + D    EP   C   P VLVNG  GI  
Sbjct: 761 QAAARYIYTRLSSISRYLCPKDDDQILEYLVDEDRRI-EPKYYCPIIPTVLVNGADGIGT 819

Query: 185 GMATNIPTHNLGEVVDGC 202
           G +T +  +N  ++VD C
Sbjct: 820 GWSTAVSNYNPLDLVDNC 837


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 161/379 (42%), Gaps = 43/379 (11%)

Query: 15   GITSVSIT-DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G T++ +T ++  N  L    N    R+IP + DGLKP  R++LF   +     +K+ VK
Sbjct: 685  GQTTMYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVK 741

Query: 74   CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+
Sbjct: 742  VAQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSAS 800

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGM 186
             RY    L   A  L     KD    R  YD + + EP       P VL+NG  GI  G 
Sbjct: 801  PRYIFTMLSPLARLLFP--SKDDHTLRFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGW 858

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATG 244
            +  IP  ++ EVV+    ++D  +            P  P+     G       N Y   
Sbjct: 859  SCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQYVIN 908

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRD 301
             G + I   + IE          +TE+P +       E++ E +    EK    I D R+
Sbjct: 909  -GEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYRE 957

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGIL 358
                   + VI++     A+     L++   LQ+  + N + L    G   +  T++ IL
Sbjct: 958  YHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDIL 1017

Query: 359  KAFVAFREEVVVRRTKYLL 377
            + F   R +    R ++LL
Sbjct: 1018 RDFFELRLKYYGLRKEWLL 1036


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 160/364 (43%), Gaps = 46/364 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +   K  +K A++ G V     YH HG  ++   +
Sbjct: 681  RSIPSLCDGLKPGQRKILFSCFKRNL---KSEIKVAQLIGYVAEHSAYH-HGEQSLASTI 736

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+ +  G   A+ RY    L K    L  +     + +
Sbjct: 737  IGMAQNFVGSNNINLMMPIGQFGTRNQGGKEHASARYIFTSLSKITRILFPEHDDHVLKY 796

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN-PDID 212
              + D    EP       P  LVNG  GI  G +T+IP +N   +V+     ++  P  +
Sbjct: 797  LED-DNQVVEPEWYMPIIPMCLVNGSSGIGTGWSTDIPNYNHKGIVEQIRGKLEGRPFTE 855

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L    +  +G                      +G  +++G   I++     E I +TE+P
Sbjct: 856  LHPWYKGFQG----------------QIEINPKGGYIVKGQYEIDEV---EETIKITELP 896

Query: 273  YQVNKAAMLEKIAELVRE-----KRIVDIADLRD--ESDRQGYRVVIELKRGASADVILN 325
              V K     K+  L++E     K   +I D+R+   ++R  + V     R      I  
Sbjct: 897  --VGKWTRDYKVV-LIQELLSPPKGEPEIEDIREYHTNNRVHFEVQAIPGRIQQWGDIEK 953

Query: 326  QLYRYTSLQSLFSVNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            +L   T++Q   + N+V  N  YK +R+ + + I++ F A R +   +R  YL++K +  
Sbjct: 954  KLKLSTTMQ---TTNIVMFNDKYKLKRYQSTVEIMEEFYALRLKCYQKRKDYLVSKIQRD 1010

Query: 384  AHVL 387
              +L
Sbjct: 1011 VDIL 1014


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28  SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SYLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 191 SYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 247

Query: 78  SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
           +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 248 AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 306

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
              L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 307 FTMLSPLARLLFPPKDDHTLRFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 364

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
           P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 365 PNFDVREVVNNIRRLLDGEEP----------LPMLPSYKNFKGTIEELASNQYVIN-GEV 413

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 414 AILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTD 463

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
              + VI++     A+     L++   LQS  + N + L    G   +  T++ IL+ F 
Sbjct: 464 TTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 523

Query: 363 AFREEVVVRRTKYLL 377
             R +    R ++LL
Sbjct: 524 ELRLKYYGLRKEWLL 538


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 16/195 (8%)

Query: 16  ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +T + I+D +    + +++  N+   R+IP + DGLKP  R++++   +  +   K  +K
Sbjct: 671 LTEIPISDFINKELILFSLADNI---RSIPSVLDGLKPGQRKVIYACFKRNL---KSEIK 724

Query: 74  CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A++ G V     YH HG  ++Y  +  +AQD+  S  + L++  G FG+    G   AA
Sbjct: 725 VAQLGGYVSEHTGYH-HGEQSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRATGGKDSAA 783

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY    L K    + + L    +++  + D    EP       P VLVNG  GI  G +
Sbjct: 784 PRYIFTELNKLTRKIFNTLDDPLLNYIQD-DEQTVEPEWYLPVIPMVLVNGTEGIGTGWS 842

Query: 188 TNIPTHNLGEVVDGC 202
           TNIP  N  ++V+  
Sbjct: 843 TNIPPFNPMDIVNNV 857


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 177/381 (46%), Gaps = 42/381 (11%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            +T + I+D +    + +++  NV   R+IP + DG KP  R++L+G  +  +   K  +K
Sbjct: 734  LTEIPISDFINQELILFSMADNV---RSIPSVLDGFKPGQRKVLYGCFKRNL---KSEIK 787

Query: 74   CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A++SG V  K  YH HG  ++   +  +AQ++  S  + L++  G FG+    G   +A
Sbjct: 788  VAQLSGYVSEKTGYH-HGEQSLVQTIIGLAQNFVGSNNINLLKPNGAFGTRAAGGKDFSA 846

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    + K    + + L      +  + + S  EP       P +LVNG  GI  G +
Sbjct: 847  ARYIFTEISKITRAIFNPLDDPIYTYVQDDEQSV-EPEWYLPVIPMLLVNGSEGIGTGWS 905

Query: 188  TNIPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP++N  ++VD    +++  P  ++    +   G   P G          + Y     
Sbjct: 906  TNIPSYNPLDLVDNIRRLMNGEPMEEMKPWFKGWEGTIEPNGP---------DKYK---- 952

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE-KIAELVREKRIVDIADLRDESDR 305
              V+  +  I++T+     + +TEIP +     + E  +A L  EK    I D+ +E   
Sbjct: 953  --VVGKIDQIDETT-----VEITEIPVKTWTNNVKEFLLAGLGNEKTPAWIKDM-EEQHG 1004

Query: 306  QGYRVVIELKRGASADVI-LNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIG-ILKAFV 362
               R V+++     A  + +  L ++  + S+   NMVA +   + +R++    IL+ + 
Sbjct: 1005 LNIRFVVKMSPDEMAKALKVGLLEKFKLISSISMSNMVAFDPLGRIKRYSSAQEILRDYY 1064

Query: 363  AFREEVVVRRTKYLLNKARDR 383
              R E   +R  +++++ +++
Sbjct: 1065 YVRLEYYQKRKDFMMDELQNQ 1085


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 126/298 (42%), Gaps = 31/298 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+IL+   +  +   KK +K A++S  V     YH HG  ++  
Sbjct: 697 LDRSIPSMLDGLKPGQRKILYACFKRNL---KKDIKVAQLSAYVAEHSAYH-HGEGSLAS 752

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  +AQD+  S  + L+   G FG+    G   A+ RY   RL      L ++   D +
Sbjct: 753 TIVNLAQDFVGSNNVNLLHPSGQFGTRLQGGKDAASARYIYTRLAALTRHLFNE-NDDQL 811

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               N +G   EP       P VL+NG  GI  G +T IP +N  +++     +++    
Sbjct: 812 LTYLNEEGQSIEPEWYMPILPTVLINGADGIGTGWSTTIPNYNPRDIMANLRRLLEGE-- 869

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             +A+    RG +        G       + +G  S V+ G      T      I +TE+
Sbjct: 870 AQEAMHPWYRGFN--------GNIAEAATHKSGSRSYVVSGTV----TQTGPNTIEITEL 917

Query: 272 P---YQVNKAAMLEKI---AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           P   +  +    LE +    E VR      IAD  +         V+EL  G   +++
Sbjct: 918 PIRKWTQDYKEFLETLLRPTEKVRRDEAPIIADYSEHHSDSNVHFVVELLPGKMEELL 975


>gi|284192199|gb|ADB82819.1| topoisomerase IV subunit A [Coxiella burnetii]
          Length = 76

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G++   KY K AR  G V+GK+HPHG+ A Y+A+  MAQ +S R   ++
Sbjct: 1   QRRIVYAMSELGLKSTAKYKKSARTVGNVLGKFHPHGDIACYEAMVLMAQPFSFRYPFVD 60

Query: 113 GQGNFGSVDGDPPA 126
           GQ N+GS D DP +
Sbjct: 61  GQSNWGSAD-DPKS 73


>gi|315307938|gb|ADU04373.1| ParC [Vibrio cholerae O1 biovar El Tor]
          Length = 73

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 3/68 (4%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 6   KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 64

Query: 128 ERYTECRL 135
            RYTE +L
Sbjct: 65  MRYTEAKL 72


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
            kowalevskii]
          Length = 1649

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 160/397 (40%), Gaps = 60/397 (15%)

Query: 27   NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
            N  L    N+   R+IP + DGLKP  R++LF   +     +K+ VK A+++G V     
Sbjct: 715  NKELVLFSNMDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEHSA 771

Query: 85   YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAH 140
            YH HG A++   +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A 
Sbjct: 772  YH-HGEASLMGTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLAR 830

Query: 141  FLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L+     D  +    +D + + EP   C   P VLVNG  GI  G +T I  +++ E+V
Sbjct: 831  LLMP--ASDDPNLTQLFDDNQRIEPEWYCPIIPMVLVNGAEGIGTGWSTKIANYDVREIV 888

Query: 200  DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-----KNAYATGRGSIVIRGVS 254
                 +ID  +               P      G  G       N YA   G I I    
Sbjct: 889  ANIRLMIDGEE-------------PLPMLPSYKGYKGAIEEIEANRYACS-GEIAIV--- 931

Query: 255  HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVV 311
                   D   + +TE+P +V      E + E +    EK    I D ++       ++V
Sbjct: 932  -------DNNTLEITELPVRVWTQVYKETVLEPMLHGSEKVQPLITDYKEYHTDTTVKIV 984

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEV 368
            +++            L++   LQ+  SV    L   +G   +   ++ ILK F   R   
Sbjct: 985  VKMSDEKLLKAEEQGLHKVFKLQNTISVTNSVLFDSHGCIKKYDDIMEILKEFFELR--- 1041

Query: 369  VVRRTKYLLNKARDRAHVLVGLAIAVAN-LDEVVRII 404
                    L + R R   L GL  A +N LD   R I
Sbjct: 1042 --------LERYRIRKEYLEGLLAAESNKLDNQARFI 1070


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
            cuniculus]
          Length = 1181

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 150/353 (42%), Gaps = 42/353 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 713  RSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L     KD    
Sbjct: 769  INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPP--KDDHTL 826

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            R  YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  +  
Sbjct: 827  RFLYDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE-- 884

Query: 213  LDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                      P  P+     G       N Y    G + I   + IE          ++E
Sbjct: 885  --------PLPMLPSYKNFKGTIEELAPNQYVIN-GEVAILNSTTIE----------ISE 925

Query: 271  IPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E++ E +    EK    I D R+       + V+++     A+     L
Sbjct: 926  LPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGL 985

Query: 328  YRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            ++   LQ+  + N + L    G   +  T++ ILK F   R +    R ++LL
Sbjct: 986  HKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELRLKYYGLRKEWLL 1038


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
            [Canis familiaris]
          Length = 1533

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 692  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 748

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 749  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 807

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 808  FTMLSPLARLLFPPKDDQTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 865

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 866  PNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFRGTIEELAPNQYVIS-GEV 914

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 915  AILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 964

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 965  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1024

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1025 ELRLKYYGLRKEWLL 1039


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 149/321 (46%), Gaps = 39/321 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R++++   +  +  + K V+ A    ++   YH HG A++   +  
Sbjct: 826  RSIPSVIDGLKPGQRKVMYACFKRNLINDMKVVELAGYVSQISA-YH-HGEASMQMTIVG 883

Query: 100  MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L    +++  
Sbjct: 884  LAQNFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIFTRLSPFARRVYSALDDPVLEYNI 943

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC---VAVIDNP--D 210
            + DG   EPV      P VL+NG  GI  G +TNIP ++  EVV+     +  +D+   +
Sbjct: 944  D-DGKSIEPVTYFPVVPMVLINGAEGIGTGWSTNIPNYHPVEVVNNLKRRMGRLDDSGEE 1002

Query: 211  IDLDALMEIIRG----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
               + +M   RG    P+ P G       GI            IR        +GD E +
Sbjct: 1003 KPFETMMPWFRGWKGTPE-PAGPDRYKFNGI------------IR-------ETGDTE-V 1041

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILN 325
             +TE+P ++       K+ E+++ +++   I D ++ +D +   ++I++      + +  
Sbjct: 1042 EITELPIRMWTDDFKAKLEEVIKAEKVPSFIKDYKEFNDHKNVHMIIQMDDKHMKEALKE 1101

Query: 326  QLYRYTSL-QSLFSVNMVALN 345
             L     L +++ + N+VA +
Sbjct: 1102 GLAEKFKLNKTVATSNLVAFD 1122


>gi|262411032|gb|ACY66882.1| GyrA [Salmonella enterica]
          Length = 63

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 44/54 (81%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           RR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD++ RMAQ +SLR
Sbjct: 9   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPFSLR 62


>gi|289064506|gb|ADC80575.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 78.2 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           RAIP L DGLKP  R++L+   +  +   K  +K +++SG V  K  YH HG A++   +
Sbjct: 755 RAIPSLMDGLKPGQRKVLYACFKRNL---KTKLKVSQLSGFVSDKAAYH-HGEASLNGTI 810

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ +  S  + L+   G FGS    G   +A RY    L   A +L  +     + +
Sbjct: 811 VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQY 870

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           + + DG   EP       P VL+NG  GI  G +T IP
Sbjct: 871 KED-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 907


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
            [Macaca mulatta]
          Length = 1481

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 658  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 714

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 715  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 773

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 774  FTMLSSLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 831

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 832  PNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 880

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 881  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 930

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 931  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 990

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 991  ELRLKYYGLRKEWLL 1005


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1404

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 157/356 (44%), Gaps = 46/356 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   ++ + +    +K   ++ +V  K  YH HG  ++   +
Sbjct: 689  RSIPSVLDGFKPGQRKVLFCCFKINLTYE---IKVGTLAAKVSEKTSYH-HGEESLQQTI 744

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  +  + L++  G+FGS    G   AA RY   +L K A  +         ++
Sbjct: 745  VGLAQNFVGTNNIYLLKPAGSFGSRATGGKDAAAARYIHTQLNKVARSIFHPSDDALFNY 804

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DGS  EP       P VLVNG  GI  G +TNIP+ N  +++     +++      
Sbjct: 805  LED-DGSPIEPEWYLPIIPMVLVNGAEGIGTGWSTNIPSFNPLDIIKNIRHLMN------ 857

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI-----VV 268
            D +M+ +    +P              +  G   +V +   H  +  G  EQ+      +
Sbjct: 858  DEVMDEM----YP--------------WYRGWKGVVEKVDDHRFRLYGKVEQVGPNVLEI 899

Query: 269  TEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            TE+P +   +++ E +   +   EK    I D+ +E      R +I L     A      
Sbjct: 900  TEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDM-EEQHTNDIRFIITLTPEEMAKTKKIG 958

Query: 327  LY-RYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
            +Y R+  +  +   NMVA + + K  ++ T++ IL  F   R E   +R  Y+  K
Sbjct: 959  VYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDILTEFYYVRLEFYQKRKDYMSQK 1014


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
            [Canis familiaris]
          Length = 1532

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 159/377 (42%), Gaps = 56/377 (14%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSPLARLLFPPKDDQTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPD---FPTGAVILGRTGIKNAYATGRG 246
            P  ++ EVV+    ++D  + + +    +  RG      P   VI G   I N+      
Sbjct: 865  PNFDIREVVNNIRRLMDGEEPLPMLPSYKNFRGTIEELAPNQYVISGEVAILNSTT---- 920

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDES 303
                               I ++E+P +       E++ E +    EK    I D R+  
Sbjct: 921  -------------------IEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYH 961

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKA 360
                 + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ 
Sbjct: 962  TDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRD 1021

Query: 361  FVAFREEVVVRRTKYLL 377
            F   R +    R ++LL
Sbjct: 1022 FFELRLKYYGLRKEWLL 1038


>gi|289064512|gb|ADC80578.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 78.2 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 11/158 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           RAIP L DGLKP  R++L+   +  +   K  +K +++SG V  K  YH HG A++   +
Sbjct: 756 RAIPSLMDGLKPGQRKVLYACFKRNL---KTKLKVSQLSGFVSDKAAYH-HGEASLNGTI 811

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ +  S  + L+   G FGS    G   +A RY    L   A +L  +     + +
Sbjct: 812 VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQY 871

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           + + DG   EP       P VL+NG  GI  G +T IP
Sbjct: 872 KED-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 908


>gi|114228539|gb|ABI58274.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 77

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K  R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 5   KFKKSCRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 63

Query: 128 ERYTECRLQK 137
            RYTE RL K
Sbjct: 64  MRYTESRLSK 73


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 150/353 (42%), Gaps = 42/353 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 678  RSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 733

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ F
Sbjct: 734  INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPAKDDHTLKF 793

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  +  
Sbjct: 794  L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEE-- 849

Query: 213  LDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                      P  P+     G       N Y    G + I   + IE          ++E
Sbjct: 850  --------PLPMLPSYKNFKGTVEELAPNQYVIS-GEVAILNSTTIE----------ISE 890

Query: 271  IPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E++ E +    EK    I D R+       + V+++     A+     L
Sbjct: 891  LPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERAGL 950

Query: 328  YRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            ++   LQ+  + N + L    G   +  T++ IL+ F   R +    R ++LL
Sbjct: 951  HKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLL 1003


>gi|289064496|gb|ADC80570.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY+ L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 12/204 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           KG   VS +D + N  L    N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 669 KGTKHVSYSDFI-NLELVLFSNADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 724

Query: 74  CARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A++SG V  M  YH HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 725 VAQLSGSVAEMSAYH-HGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCAS 783

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY    +      +   L    + ++ + DG   EP+      P VLVNG  GI  G +
Sbjct: 784 ARYIFTLMSPLTRLIYHPLDDPLLQYQVD-DGQRIEPIWYIPIIPMVLVNGAEGIGTGWS 842

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDI 211
           T I  +N  E++     +I+  ++
Sbjct: 843 TKIANYNPRELISNLRRMINGEEL 866


>gi|129560501|dbj|BAF48801.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|129560503|dbj|BAF48802.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           KPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMR 58


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSPLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 865  PNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 914  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 964  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1023

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1024 ELRLKYYGLRKEWLL 1038


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 157/375 (41%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 690  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 746

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 747  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 805

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L      L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 806  FTMLSPLTRLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 863

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 864  PNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQYVIN-GEV 912

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 913  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + VI++     A+     L++   LQ+  + N + L    G   +  T++ ILK F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFF 1022

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1023 ELRLKYYGLRKEWLL 1037


>gi|129560499|dbj|BAF48800.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           KPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR 58


>gi|289064504|gb|ADC80574.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDESIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 42/353 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 212 RSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 267

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ F
Sbjct: 268 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLKF 327

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  +  
Sbjct: 328 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE-- 383

Query: 213 LDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                     P  P+     G       N Y    G + I   + IE          ++E
Sbjct: 384 --------PLPMLPSYKNFKGTIEELAPNQYVIS-GEVAILNSTTIE----------ISE 424

Query: 271 IPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +P +       E++ E +    EK    I D R+       + V+++     A+     L
Sbjct: 425 LPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGL 484

Query: 328 YRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           ++   LQ+  + N + L    G   +  T++ IL+ F   R +    R ++LL
Sbjct: 485 HKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLL 537


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1239

 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 16/198 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I + +    + +A+ V   RAIP   DGLKP  R+IL+ M++     + +  K A++
Sbjct: 662 SLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWAMLR---RHSSEASKVAQL 717

Query: 78  SGEV--MGKYHPHGNAAIYDALARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAER 129
           SG +     +H HG  ++ + + +MAQ+++    + LL+ EGQ  FGS    G+  AA R
Sbjct: 718 SGYISEASAFH-HGEVSLQETIVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPR 774

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y   +L + A  L  +     +D+  + +G+  EP       P +L NG  GI  G AT 
Sbjct: 775 YIFTKLSRFARLLFPEEDDPLLDYM-DEEGTPVEPHHYVPILPMLLCNGAVGIGFGFATT 833

Query: 190 IPTHNLGEVVDGCVAVID 207
           IP  +  +V     A+I+
Sbjct: 834 IPPFHPLDVSAAVRAMIN 851


>gi|71842516|gb|AAZ43365.1| ParC [Escherichia coli]
          Length = 73

 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 5   KFKKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 63

Query: 128 ERYTECRLQK 137
            RYTE RL K
Sbjct: 64  MRYTESRLSK 73


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSPLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 865  PNFDVREVVNNIRLLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 914  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 964  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1023

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1024 ELRLKYYGLRKEWLL 1038


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 160/353 (45%), Gaps = 40/353 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALA 98
            R+IP + DGLKP  R++++   +  +   KK VK   ++G V G   + HG +++   + 
Sbjct: 823  RSIPSVIDGLKPGQRKVMYTCFRRNI---KKDVKVIDLAGSVSGTTDYAHGESSMQGTIV 879

Query: 99   RMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             +AQ++  +  +  +E  GNFGS    G   A+ RY   RL   A  +        + + 
Sbjct: 880  GLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFHAHDDALLKYG 939

Query: 155  PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             + DG   EP +     P +L+NG  GI  G ++ IP  N  E++D     +        
Sbjct: 940  ES-DGKPIEPEMYIPVLPTILINGSSGIGTGWSSEIPNFNPMEIIDNIRIRMKE-----G 993

Query: 215  ALMEIIRGPDFPTGAVILGRT---GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            A  E +R P  P      GRT   G      TG     IR        +GD E + VTE+
Sbjct: 994  ATKEDMR-PMVPWYKGFTGRTEELGENRYQFTG----TIR-------QTGDNE-VEVTEL 1040

Query: 272  PYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGYRVVIELKRGASADVI-LNQ 326
            P +       EK+ E+++  +    I D  D  +  DR  + + +E K  A+A    L +
Sbjct: 1041 PVRYWTQDFKEKLEEIIKADKTPSFIKDYIDY-NTPDRVHFIIKMEDKYMAAALAKGLEE 1099

Query: 327  LYRYTSLQSLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLL 377
            +++    QS  + N+VA + + +  ++ T++ I++ F   R     +R ++ L
Sbjct: 1100 MFKLFKPQS--TTNLVAFDAHGRIHKYATVLDIIEEFYHVRLRYYEKRKQHQL 1150


>gi|289064500|gb|ADC80572.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPH +A+IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHADASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 157/375 (41%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 690  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 746

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 747  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 805

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L      L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 806  FTMLSPLTRLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 863

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 864  PNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQYVIN-GEV 912

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 913  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + VI++     A+     L++   LQ+  + N + L    G   +  T++ ILK F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFF 1022

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1023 ELRLKYYGLRKEWLL 1037


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 172/384 (44%), Gaps = 40/384 (10%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            IT + I+D +   ++ +++  NV   R+IP + DG KP  R++L+G  +  +   +  +K
Sbjct: 727  ITEIPISDFINKEFILFSMSDNV---RSIPSVLDGFKPGQRKVLYGCFKKKL---RSEIK 780

Query: 74   CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A
Sbjct: 781  VAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKDFSA 839

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L +    + + L      +  + D    EP       P +LVNG  GI  G +
Sbjct: 840  ARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIGTGWS 898

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP++N  ++V     +++      + L E+   P +      L   G +    +GR  
Sbjct: 899  TNIPSYNPKDLVTNIRRLMNG-----EELQEMT--PWYKGWGGDLEPMGPQKFKVSGR-- 949

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE-KIAELVREKRIVDIADLRDESDRQ 306
                    IE+   D   + +TEIP +     + E  ++    EK    I D+ +E    
Sbjct: 950  --------IEQI--DSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM-EEHHTT 998

Query: 307  GYRVVIELKRGASADVI-LNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
              R V++L        + +  L R+  + SL   NMVA +  G   +   ++ I+K F  
Sbjct: 999  SIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKDFYY 1058

Query: 364  FREEVVVRRTKYLLNKARDRAHVL 387
             R E   +R  Y+ +  +++  +L
Sbjct: 1059 VRLEYYQKRKDYMTDNLQNQLLML 1082


>gi|116282956|gb|ABJ97453.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 61

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           YHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL
Sbjct: 1   YHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLL 59


>gi|163788233|ref|ZP_02182679.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
 gi|159876553|gb|EDP70611.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
          Length = 183

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 57/203 (28%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICY 754
           +L  K G+ +RF  +  R   GRN+ GVRGI L     D+VI M  V   D++       
Sbjct: 1   MLALKSGKAIRFEEAKTRPM-GRNASGVRGIRLQDENTDEVIGMIAVDDMDSN------- 52

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                                        IL VSE G+GKR+S 
Sbjct: 53  ---------------------------------------------ILVVSENGYGKRSSL 67

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D+RI+NR GKG++   +++  + G LV++  V D D +++++  G  IR+ V ++R+  
Sbjct: 68  EDYRITNRGGKGVKTISITE--KTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMG 125

Query: 875 RATKGVVIFSTAKDERVVSVERI 897
           RAT+GV + +    + + +V ++
Sbjct: 126 RATQGVKLINLKGKDSIAAVAKV 148



 Score = 44.3 bits (103), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTK 701
           N+ VV    +G  +R+ L D+   NR GK    +   +    ++S++  T E+D+++  K
Sbjct: 52  NILVVSENGYG--KRSSLEDYRITNRGGKGVKTISITEKTGNLVSIKNVTDEDDLMIINK 109

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
            G  +R  ++ +RV  GR + GV+ I+L   D + ++A V+ 
Sbjct: 110 SGIAIRMAVADLRVM-GRATQGVKLINLKGKDSIAAVAKVMK 150


>gi|289672552|ref|ZP_06493442.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 403

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 183/439 (41%), Gaps = 68/439 (15%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P+     
Sbjct: 5   LLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKA---- 60

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                       +LI   D             LSE+Q   IL+ RL +L  L    +R+E
Sbjct: 61  ------------ELIARFD-------------LSEIQADYILDTRLRQLARLEEMKLRSE 95

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIV 534
            ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV       + + + + 
Sbjct: 96  QDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMP 155

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVL 590
            E + V +S  G+V            R  KG     +G+  +  D      I  ++   +
Sbjct: 156 TEPVTVVLSEKGWV------------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAV 203

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP  S + +G+ L   L    G     ++  PED++    LYV+ 
Sbjct: 204 FIDSTGRSYSVAAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPEDDA----LYVI- 255

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F
Sbjct: 256 ASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVF 315

Query: 709 PISAIRVFA---GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            IS +       G   +G+ G  +A  ++ ++   V+   A           + A +R +
Sbjct: 316 KISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTL 367

Query: 766 SGDTEEITSLKNDSSVEGN 784
           S   E++   K +    GN
Sbjct: 368 SLKPEDLEHYKGERGRRGN 386


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo
            abelii]
          Length = 1532

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 692  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 748

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 749  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 807

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 808  FTMLSSLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 865

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ E+V+    ++D  +            P  P+     G       N Y    G +
Sbjct: 866  PNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 914

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 915  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 964

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 965  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1024

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1025 ELRLKYYGLRKEWLL 1039


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 152/371 (40%), Gaps = 56/371 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +     +K+ VK A+++G V  K  YH HG  ++   +
Sbjct: 692  RSIPCMLDGLKPGQRKVLYTCFKRD---DKREVKVAQLAGSVAEKSAYH-HGEMSLCSTI 747

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+   G FG+    G   A+ RY    L      +   L    +++
Sbjct: 748  INLAQNYVGSNNINLLYPGGQFGTRLTGGKDSASPRYIFTMLSALTRHIFHPLDDPLLEY 807

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--DNPDI 211
            +   D    EPV      P +L+NG  GI  G AT IP HN  +V+     ++  D P +
Sbjct: 808  QYE-DNQRIEPVWYLPIIPMLLINGADGIGTGWATKIPNHNPRDVIANIRRMLNGDEPKM 866

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-TSG-----DREQ 265
                                     +   Y   RG  VI  V H +  T+G     D ++
Sbjct: 867  -------------------------LTPWYKNFRG--VIESVGHQKYLTAGTVGLLDGKK 899

Query: 266  IVVTEIP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            I ++E+P     Q  K  +LE +     + + V IAD ++ +     R VI    G    
Sbjct: 900  IEISELPIGTWTQTYKENVLEPLLHGSDKAKAV-IADYKEYNTDTTVRFVISFLPGEYEK 958

Query: 322  VI-----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            +       ++L++ TS  S  S+N      Y         I   F   R +   +R  YL
Sbjct: 959  LYAEEGGFHRLFKLTSSISTASMNAFDDKNYLKRYAHANEIFMEFYTVRLDFYGKRRAYL 1018

Query: 377  LNKARDRAHVL 387
            L   +  A  L
Sbjct: 1019 LGMLQAEADSL 1029


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 58/370 (15%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
           L R+I  + DGLKP  R++L+      +      +K A+++  V  K  YH HG  ++ D
Sbjct: 659 LKRSIAHVSDGLKPSQRKVLYACFTKNLT---SEMKVAQLAAYVSEKTSYH-HGEVSLAD 714

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            + ++A ++  S  + L+E  G FG+  + G   +  RY   +L K A  L D      +
Sbjct: 715 TIVKLAHNFTGSNNINLLEPCGQFGTRLMGGKDASQTRYIFTKLTKNARILFDPKDDPVL 774

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           ++  + DG   EP       P VLVNG  GI  G ++ IP  N                +
Sbjct: 775 NYLDD-DGKQIEPDYYVPILPTVLVNGTEGIGTGFSSYIPPFN---------------PL 818

Query: 212 DLDALME-IIRG----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           D+   +E IIRG    P  P      GR      ++   G  +  GV    K SG  + +
Sbjct: 819 DIKHNIERIIRGETVVPMKPWFDKFTGR-----VFSNEDGLWITEGVW---KYSG--KNV 868

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           +VTE+P         E +  L+ +K+I +     + S       +IE   G       N 
Sbjct: 869 LVTELPPGRWTQDYKEYLDTLIEKKKITNYV---NNSTTDDVNFIIEGYTG-------ND 918

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERF-----TLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           + +   LQ  F V+ + L  + P R      +   IL  FV  R E   +R  +L+   +
Sbjct: 919 IIKDFKLQKTFHVSNMHL--FHPTRGIHKYESPEEILTDFVKIRSETYKKRKAHLIRVLK 976

Query: 382 DRAHVLVGLA 391
           ++   L  ++
Sbjct: 977 EKTKKLENMS 986


>gi|2197131|gb|AAB61299.1| GyrA [Streptomyces ambofaciens]
          Length = 88

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 2/89 (2%)

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           SI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE+  R
Sbjct: 1   SITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSLR 59

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQ 334
            G R+VI LKR   A V+LN LY++T LQ
Sbjct: 60  TGQRLVIVLKRDVVAKVVLNNLYKHTDLQ 88


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 169/414 (40%), Gaps = 56/414 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +E  +  +  VS  D +    + ++I     R+IP   DG KP  R+ILF   +  +
Sbjct: 646  VNVNESMDYSVRQVSYRDFVDKELILFSI-ADCERSIPSAIDGFKPGQRKILFSCFKRNL 704

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 705  VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 762

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY   RL   A  +        V+++ + DG   EP       P VLVNG  G
Sbjct: 763  GKDHAAGRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTG 821

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD-FPTGAVILGRTGIKNA 240
            I  G +T+IP +N  EV+                L  ++RG +         G TG    
Sbjct: 822  IGTGFSTSIPNYNPLEVIRN--------------LERLMRGEEVHKMQPWYFGFTGTMEE 867

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G      + +SH          + +TE+P  V      +K  E +REK +V     R
Sbjct: 868  KEPG------KFISHGRYEVRPDGVVCITELPIGV-WTQTYKKFLEDMREKELV--VQYR 918

Query: 301  DES-----DRQGYRVVIELKRGASADVILN--QLYRYTSLQSLFSVNMVALN--GYKPER 351
            + +     D + +     L++  + DV+    QL  Y     + + N++A N  G   + 
Sbjct: 919  EHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEY-----VHATNIIAFNKEGQITKY 973

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            +    +LK F   R +   +R  YLL + R             + L+ +VR +R
Sbjct: 974  WDAESVLKDFYLVRLDYYAKRKDYLLGELRR----------LTSKLENMVRFVR 1017


>gi|36988567|gb|AAQ87921.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDPP--AAERYTE 132
           + D DP   AA RYTE
Sbjct: 61  APD-DPKSFAAMRYTE 75


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSSLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 865  PNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 914  AILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 964  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1023

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1024 ELRLKYYGLRKEWLL 1038


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1455

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 59/381 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   +
Sbjct: 683  RSIPSVVDGLKPGQRKIMFSAFKRNL---VRSLKVAQLAGYVSEHAAYH-HGEQSLVQTI 738

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+    ++ LL  +GQ       G   AA RY   RL   A  +        V++
Sbjct: 739  VGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   ++  
Sbjct: 799  RDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQ- 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGR----GSIVIR--GVSHIEKTSGDREQIV 267
                        P      G TG       G+    G   +R  GV HI           
Sbjct: 857  ------------PMKPWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHI----------- 893

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVILN 325
             TE+P         +K  E +RE+ IV      +      + V I  E+ R   A   + 
Sbjct: 894  -TELPIGT-WTQQYKKFLEDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWVAQGCVE 951

Query: 326  QLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            +  R    + + + N++A +  G   +      +LK F   R E   RR ++LL +    
Sbjct: 952  E--RLQLREYIHATNIIAFDREGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQ---- 1005

Query: 384  AHVLVGLAIAVANLDEVVRII 404
                  L  A   L+ +VR +
Sbjct: 1006 ------LQRAALKLENMVRFV 1020


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 155/381 (40%), Gaps = 59/381 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   +
Sbjct: 683  RSIPSVVDGLKPGQRKIMFSAFKRNL---VRSLKVAQLAGYVSEHAAYH-HGEQSLVQTI 738

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+    ++ LL  +GQ       G   AA RY   RL   A  +        V++
Sbjct: 739  VGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   ++  
Sbjct: 799  RDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQ- 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGR----GSIVIR--GVSHIEKTSGDREQIV 267
                        P      G TG       G+    G   +R  GV HI           
Sbjct: 857  ------------PMKPWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHI----------- 893

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVILN 325
             TE+P         +K  E +RE+ IV      +      + V I  E+ R   A   + 
Sbjct: 894  -TELPIGT-WTQQYKKFLEDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWVAQGCVE 951

Query: 326  QLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            +  R    + + + N++A +  G   +      +LK F   R E   RR ++LL +    
Sbjct: 952  E--RLQLREYIHATNIIAFDREGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQ---- 1005

Query: 384  AHVLVGLAIAVANLDEVVRII 404
                  L  A   L+ +VR +
Sbjct: 1006 ------LQRAALKLENMVRFV 1020


>gi|56554393|pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
           Topoisomerase Iv
          Length = 323

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 153/369 (41%), Gaps = 69/369 (18%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  ED++VTV+  GYVKR  L  Y A             +D D +      +T   +L F
Sbjct: 2   VASEDVIVTVTKDGYVKRTSLRSYAAS-----NGQDFAXKDTDRLLAXLEXNTKDVLLLF 56

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G      V  LP    +  G+ + NI+ +++ E I   +P  + E    N Y +F T
Sbjct: 57  TNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFEL---NGYFLFVT 113

Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           ++G V++ +L  + +  R  K    + L + D+++ V      N++ L T  G  + F  
Sbjct: 114 RNGXVKKTELKHY-KAQRYSKPLTGINLKNDDQVVDVHLTDGXNELFLVTHNGYALWFDE 172

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S + +  G  + GV+G +L +GD ++S  +                              
Sbjct: 173 SEVSI-VGVRAAGVKGXNLKEGDYIVSGQL------------------------------ 201

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            ITS                     K++ I+  +++G  K+    +F  + R+ +G+   
Sbjct: 202 -ITS---------------------KDESIVVATQRGAVKKXKLTEFEKATRAKRGVVIL 239

Query: 831 DVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              K N   I   V      D+D I L ++K  +  + V +IR + R + G  +    ++
Sbjct: 240 RELKANPHRISGFVVA---QDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEEN 296

Query: 889 ERVVSVERI 897
            RV+SV ++
Sbjct: 297 GRVISVWKV 305


>gi|315307940|gb|ADU04374.1| ParC [Vibrio fluvialis]
 gi|315307942|gb|ADU04375.1| ParC [Vibrio fluvialis]
          Length = 73

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 3/68 (4%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 6   KYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 64

Query: 128 ERYTECRL 135
            RYTE +L
Sbjct: 65  MRYTEAKL 72


>gi|153840090|ref|ZP_01992757.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746310|gb|EDM57375.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 169

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 78/137 (56%), Gaps = 9/137 (6%)

Query: 296 IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVN--MVALNGYKPER 351
           + DLRDESD +    ++ + R      D+++N L+  T L+  + VN  M+ L+  +P+ 
Sbjct: 2   VEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDN-RPQV 60

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L+ IL  ++ FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+
Sbjct: 61  KGLVQILSEWIEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPK 120

Query: 412 TARRELMQRSWNASDIK 428
                LM+R +  +DI+
Sbjct: 121 AV---LMER-FGITDIQ 133


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSSLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ E+V+    ++D  +            P  P+     G       N Y    G +
Sbjct: 865  PNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 914  AILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 964  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1023

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1024 ELRLKYYGLRKEWLL 1038


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSSLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ E+V+    ++D  +            P  P+     G       N Y    G +
Sbjct: 865  PNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 914  AILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + V+++     A+     L++   LQ+  + N + L    G   +  T++ IL+ F 
Sbjct: 964  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1023

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1024 ELRLKYYGLRKEWLL 1038


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 173/414 (41%), Gaps = 56/414 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +  +
Sbjct: 646  VNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFKRNL 704

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 705  VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 762

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY   RL + A  +        V+++ + DG   EP       P VLVNG  G
Sbjct: 763  GKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNGTTG 821

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD-FPTGAVILGRTGIKNA 240
            I  G +T+IP +N  E++            +L+ LM+   G +         G TG    
Sbjct: 822  IGTGFSTSIPNYNPLEIIS-----------NLERLMQ---GEEVHKMQPWYFGFTGTMEE 867

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G+       VSH          + +TE+P  V      +K  E +REK +V     R
Sbjct: 868  KEPGKF------VSHGRYEIRPDGVVCITELPIGV-WTQTYKKFLEDMREKELV--VQYR 918

Query: 301  DES-----DRQGYRVVIELKRGASADVILN--QLYRYTSLQSLFSVNMVALN--GYKPER 351
            + +     D + +     L++  + DV+    QL  Y     + + N++A N  G   + 
Sbjct: 919  EHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEY-----VHATNIIAFNKEGQITKY 973

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                 +LK F   R +   +R +YLL + R             + L+ +VR +R
Sbjct: 974  SDAESVLKEFYLVRLDYYAKRKQYLLGELRR----------LTSKLENMVRFVR 1017


>gi|213024348|ref|ZP_03338795.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 78

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 247 SIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            + IR  + +E  +   RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+
Sbjct: 1   KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 60

Query: 306 QGYRVVIELKRGASADVI 323
            G R+VIE+KR A  +V+
Sbjct: 61  DGMRIVIEVKRDAVGEVV 78


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 147/359 (40%), Gaps = 48/359 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+ILF   +       +  K A+ SG V     YH HG  ++   +
Sbjct: 705  RSIPSMVDGLKPGQRKILFCSFKRNF---VREAKVAQFSGYVSEHSAYH-HGEQSLAGTI 760

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+    ++ LLL  GQ       G   A+ RY   +L     FL        +D+
Sbjct: 761  IGMAQDYVGSNNINLLLPIGQFGTRGQGGKDHASARYVFTQLSPVTRFLFPKADDILLDY 820

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              N DG   EP       P VLVNG  GI  G ++ +P +N  +++     ++++   + 
Sbjct: 821  L-NEDGQSIEPTWYVPIIPMVLVNGSEGIGTGWSSYVPNYNPVDIIANIRHLLNDEATE- 878

Query: 214  DALMEIIRGPDFPTGAVILG---RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                     P  P     LG   +T  K A A+   S +I  V        D   + + E
Sbjct: 879  ---------PMHPWYKGFLGSVEKTATKEAGASYTVSGIIEEV--------DDTTLCIKE 921

Query: 271  IP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK----RGASADVI 323
            +P   +  +    LE ++    + +   I   RD S  +    ++ +K      A  + +
Sbjct: 922  LPIRRWTQDYKEFLESVSAENDKSKDPFIEGCRDYSGSELVNFLVGMKPEKLEAAKREGL 981

Query: 324  LNQLYRYTSLQS----LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            L +    TS+ +    LF    V      PE+     IL+ F   R E+  +R K LL+
Sbjct: 982  LKKFKLTTSISTCNMHLFDSKGVIKKYDTPEQ-----ILEEFFYIRLELYEKRKKVLLD 1035


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 15/186 (8%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV- 81
           D+  N  L       L R+IP + DG KP  R++LF   +  +   K  +K A++SG V 
Sbjct: 707 DDFVNKELILFSRADLMRSIPSVVDGFKPSQRKVLFSCFKRKL---KSDIKVAQLSGYVS 763

Query: 82  -MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECR 134
               YH HG A++   +  +AQD+    ++ LL+  GQ  FG+    G   A+ RY   R
Sbjct: 764 EHSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQ--FGTRLQGGKDHASPRYIFTR 820

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      +  +     +D+  N DG   EP       P VLVNG  GI  G +T+IP +N
Sbjct: 821 LAPICRAIFPEADDALLDYI-NEDGQVIEPDYYLPILPLVLVNGADGIGTGWSTSIPNYN 879

Query: 195 LGEVVD 200
             ++ D
Sbjct: 880 PRDLTD 885


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 179/420 (42%), Gaps = 91/420 (21%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+I++G  +  +   KK +K A++ G V     YH HG  ++   +
Sbjct: 765  RSIPSVADGLKPGQRKIIWGCFKRKL---KKEIKVAQLVGYVSEHAAYH-HGEQSLTMTI 820

Query: 98   ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERY--------TECRLQKAAHFLL 143
              +AQD+    ++ LL+  GQ  +G+ D  G   AA RY        T      A   LL
Sbjct: 821  VNLAQDYVGSNNINLLMPNGQ--YGTRDQGGKDHAAARYIFTELSPLTRSLFNTADEPLL 878

Query: 144  DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                +D     P Y      P++     P VLVNG  GI  G +T+IP++N  ++V    
Sbjct: 879  KQQKEDNQPVEPEY----YMPII-----PMVLVNGADGIGTGWSTSIPSYNPTDIVANIR 929

Query: 204  AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             ++D  +          + P FP      G   IK   +TG+    + G++       + 
Sbjct: 930  RLMDGEE----------QVPMFPWWRGFNGE--IK---STGKNKYDVTGIAR----KLND 970

Query: 264  EQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI-----ELK 315
             Q+ +TE+P   +  N  A LE +  +V EK   +     +  D      +I     ELK
Sbjct: 971  TQVEITELPIHKWTQNFKAELETM--MVSEKG--EAPTYTEHHDNTNVHFIITMSATELK 1026

Query: 316  RGASADVILNQLYRYTSLQSLFSVNMVALN----------------GYKPERFTLIGILK 359
            +      +  + ++ TS   + + NM+A N                 + P+R       K
Sbjct: 1027 KAEEQGFV--EYFKLTS--KISTANMIAFNFDGKITKYDSPEEIVEEFYPQRLMYYQKRK 1082

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV-----VRIIRFSPNPETAR 414
             ++A   +V + R   L N+AR    ++V   + V+N  +V     +R   F P P+ A+
Sbjct: 1083 DYLADELQVQLSR---LNNQAR-FIQMIVDRQLIVSNRKKVDIVADLRKHDFRPFPKIAK 1138


>gi|289064498|gb|ADC80571.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 77.0 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYHTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1164

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 35/350 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  +   K  +K A++ G       YH HG A++   +
Sbjct: 768  RSIPSMVDGFKPGQRKVLFACFKRKL---KAEIKVAQLGGYCSEHSAYH-HGEASLTQTI 823

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + ++   G FG+    G   A+ RY    ++K    +      + +++
Sbjct: 824  VGLAQNFVGSNNINVLSPNGQFGTRASGGKDAASARYIFTNVEKITRVIFPPADDNVLNY 883

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG+  EP       P VLVNG  GI  G +++IP +N  ++V+     + N  ++ 
Sbjct: 884  LTD-DGTQIEPEWYIPILPMVLVNGSSGIGTGWSSDIPNYNPVDIVNNLRRRLANEPME- 941

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                        P      G TG   + A G+  ++       E    D + I +TE+P 
Sbjct: 942  ------------PMHPWFRGFTGQITSEAPGKYKVL------GEWDQPDEDTIEITELPV 983

Query: 274  QVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +V   +  E+I   +   +K    + D R+         +I L       +    + +  
Sbjct: 984  RVWNQSYKEQIEAWINSTDKIPALVKDYREYHTETTVHFIISLTERGKDAIKKEGIEKVF 1043

Query: 332  SLQSLFSV-NMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             L +  S+ NMV  +  G   +  T   IL  F   R     +R +YL+N
Sbjct: 1044 KLSANLSITNMVCFDPSGKIKKYSTPEQILDDFYDVRLAYYQKRKEYLVN 1093


>gi|289064494|gb|ADC80569.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|289064492|gb|ADC80568.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 127/273 (46%), Gaps = 25/273 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R++P + DGLK   R++LF  M+  +      VK A+++G       YH HG A+++  +
Sbjct: 686 RSLPSVVDGLKISQRKVLFACMKRKL---TSEVKVAQLAGYCSEHTAYH-HGEASLHSTI 741

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S  L L+   G FG+    G   A+ RY    LQK    +  +  +D    
Sbjct: 742 VNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIFTLLQKHTRLVFPE--EDDALL 799

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           R   D  F  EPV      P +LVNG  GI  G +++IP H+   V+D  + ++D  +  
Sbjct: 800 RYADDDGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCHHPVLVIDNLLKLLDAEEAG 859

Query: 213 LD-ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            D +++E+     +  G          +   TG+ S V RG  ++E+   +   + VTE+
Sbjct: 860 DDLSIVELSLMTPWAKGFS-------GDIRQTGKHSFVSRG--NVEQV--NTSTVRVTEL 908

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           P         + + +LV +K I   ++   E D
Sbjct: 909 PVGKWVEDYKKFLWDLVGKKAIRSFSEHHSERD 941


>gi|289064502|gb|ADC80573.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPH +A+IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHCDASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|270707329|ref|ZP_06223100.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
 gi|270315774|gb|EFA27905.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
          Length = 170

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 97/175 (55%), Gaps = 8/175 (4%)

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +I  ++ I+  Y  GRGSI +R     +K  G   +I+++ +P+Q + + ++ +IA+ + 
Sbjct: 1   IISPKSEIRKIYEQGRGSIKMRATW--KKEDG---EIIISALPHQSSPSKVIAQIADQMT 55

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-G 346
            K++  + D+RDE+D +    ++ + R      D ++  L+  T L+  + VNM  +   
Sbjct: 56  AKKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLD 115

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           +KP    L+ IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+
Sbjct: 116 HKPAVKGLLEILNEWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVI 170


>gi|114228537|gb|ABI58273.1| DNA topoisomerase IV subunit A [Shigella flexneri]
          Length = 72

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 3/70 (4%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K  R  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 4   KFKKSDRTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 62

Query: 128 ERYTECRLQK 137
            RYTE RL K
Sbjct: 63  MRYTESRLSK 72


>gi|225550343|ref|ZP_03771292.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379497|gb|EEH01859.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 426

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 183/415 (44%), Gaps = 48/415 (11%)

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++ GL   V  
Sbjct: 5   YNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIVEGLIKCVDL 64

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DE+++IIR S + + A+  L+Q                          T   +  Q  A
Sbjct: 65  IDEIIKIIRASDSRQDAKNALIQ--------------------------TFAFTNNQAEA 98

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           I+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++  K E    R
Sbjct: 99  IIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEFGYQR 158

Query: 517 RTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           +T++ +  +  E +ED ++ ++ + + +S  GY+K V    + + +    G     ++  
Sbjct: 159 KTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG-----LKTN 213

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +    ++++H  +L  +S   +      ++     +  G+ L N    +  E++  + 
Sbjct: 214 DLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVY 273

Query: 635 ----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVE 688
                F  DE       +V  +K   ++R +L++ + +N++ K    MKL+  D ++S  
Sbjct: 274 VCNEQFKVDEHQ-----LVLGSKLNLIKRIELNE-LDLNKNSKQISIMKLNENDGLISAN 327

Query: 689 TCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+ IV
Sbjct: 328 LIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSILIV 381


>gi|84500794|ref|ZP_00999029.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84390861|gb|EAQ03279.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 122

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 5/117 (4%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF  R+SVGVRG+ L + D+V SM ++    A+ DER  Y+K     RR ++GD E+ 
Sbjct: 1   MRVFNSRSSVGVRGVRLNEKDEVASMFVLPTFPAESDERASYLK----MRRAMAGDVEQT 56

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           T  + + + +  + ++R  E+   E  ILT++  G G  +SS+D+ +  R G G+ A
Sbjct: 57  TD-EEEGNADMPLPQDRYAEMSAAETLILTITAGGAGHISSSHDYPLRGRGGMGVTA 112


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 150/354 (42%), Gaps = 45/354 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DGLKP  R++LF   +  +   K+ +K  ++ G +     YH HG+ ++   +
Sbjct: 673 RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQLGGYIAEHSAYH-HGDLSLVSTI 728

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++    ++ LLL +GQ    ++ G   A+ RY    L K   ++  +     + +
Sbjct: 729 IGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHLLKY 788

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + DG   EP       P  LVNG  GI  G +T+I  +N                IDL
Sbjct: 789 LED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYN---------------PIDL 832

Query: 214 -DALMEIIRGPDF-PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
              +   + G  F P         GI        G+ VI+G+    + +   + + + E+
Sbjct: 833 VQQIKNRLNGEQFQPMAPFYRNFDGIIENLPN--GNCVIKGLIDCNEAT---DIVTIREL 887

Query: 272 P---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           P   +  N    L+K  E+  E     I DLR+   +      I++  G   D  L    
Sbjct: 888 PIKKWTRNYKEWLDK--EMAEEGS--QIVDLREYHTKYKIHFEIQMVDGFVQD--LKNPL 941

Query: 329 RYTSLQSLFSV-NMVALN-GYKPERFTLI-GILKAFVAFREEVVVRRTKYLLNK 379
            Y  L S  S  NMV  +   K +++  +  I++ F   R E   +R  YL++K
Sbjct: 942 EYFKLSSPASCSNMVLFDSNSKIKKYECVQDIMEEFYQVRLEFYHKRKDYLISK 995


>gi|36988497|gb|AAQ87916.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDPP--AAERYTE 132
           + D DP   AA RYTE
Sbjct: 61  APD-DPKSFAAMRYTE 75


>gi|36988539|gb|AAQ87919.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 74

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 3/75 (4%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP--AAERYTE 132
            D DP   AA RYTE
Sbjct: 61  PD-DPKSFAAMRYTE 74


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 40/384 (10%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            IT + I+D +    + +++  NV   R+IP + DG KP  R++L+G  +  +   +  +K
Sbjct: 727  ITEIPISDFINKELILFSMSDNV---RSIPSVLDGFKPGQRKVLYGCFKKKL---RSEIK 780

Query: 74   CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A
Sbjct: 781  VAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKDFSA 839

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L +    + + L      +  + D    EP       P +LVNG  GI  G +
Sbjct: 840  ARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIGTGWS 898

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP++N  ++V     +++      + L E+   P +      L   G +    +GR  
Sbjct: 899  TNIPSYNPKDLVTNIRRLMNG-----EELQEMT--PWYKGWGGDLEPMGPQKFKVSGR-- 949

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE-KIAELVREKRIVDIADLRDESDRQ 306
                    IE+   D   + +TEIP +     + E  ++    EK    I D+ +E    
Sbjct: 950  --------IEQI--DSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM-EEHHTT 998

Query: 307  GYRVVIELKRGASADVI-LNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
              R VI+L        + +  L R+  + SL   NMVA +  G   +   ++ I+K F  
Sbjct: 999  SIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKDFYY 1058

Query: 364  FREEVVVRRTKYLLNKARDRAHVL 387
             R E   +R  Y+ +  +++  +L
Sbjct: 1059 VRLEYYQKRKDYMTDNLQNQLLML 1082


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1566

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 151/351 (43%), Gaps = 37/351 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  +   K  +K A++ G       YH HG A++   +
Sbjct: 749  RSIPSMVDGFKPGQRKVLFACFKRKL---KAEIKVAQLGGYCSEHSAYH-HGEASLTQTI 804

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + ++   G FG+    G   A+ RY    ++K    +      + +++
Sbjct: 805  VGLAQNFVGSNNINVLSPNGQFGTRASGGKDAASARYIFTNVEKITRVIFPPADDNVLNY 864

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG+  EP       P VLVNG  GI  G +++IP +N  ++V+     + N  ++ 
Sbjct: 865  LTD-DGTQIEPEWYIPILPMVLVNGSSGIGTGWSSDIPNYNPVDIVNNLRRRLANEPME- 922

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                        P      G TG   + A G+  ++       E    D + I +TE+P 
Sbjct: 923  ------------PMHPWFRGFTGQITSEAPGKYKVL------GEWDQPDEDTIEITELPV 964

Query: 274  QVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVVIEL-KRGASADVILNQLYRY 330
            +V   +  E+I   +   +K    + D R+         +I L +RG  A +    + + 
Sbjct: 965  RVWNQSYKEQIEAWINSTDKIPALVKDYREYHTETTVHFIISLTERGKDA-IKKEGIEKV 1023

Query: 331  TSLQSLFSV-NMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              L +  S+ NMV  +  G   +  T   IL  F   R     +R +YL+N
Sbjct: 1024 FKLSANLSITNMVCFDPSGKIKKYSTPEQILDDFYDVRLAYYQKRKEYLVN 1074


>gi|49425512|gb|AAT66071.1| DNA topoisomerase IV subunit A [Shigella dysenteriae]
          Length = 69

 Score = 76.3 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 48/65 (73%), Gaps = 3/65 (4%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 2   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 60

Query: 133 CRLQK 137
            RL K
Sbjct: 61  SRLSK 65


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
           saltans]
          Length = 1247

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 16/267 (5%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           RA+P   DGLKP  R+IL+   + G     + +K +++SG +  +  +H HG  ++   +
Sbjct: 693 RALPSAVDGLKPSQRKILWSCFRRGNA--NESLKVSQLSGYISEVSAFH-HGEMSLQQTI 749

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            +MAQD+  S  + L+E +G FGS    G   AA RY   +L   A  +      + + F
Sbjct: 750 IKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHAAARYIFTKLSPLARLIFPKEDDELLQF 809

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--DNPDI 211
             + +G + EP       P +LVNG  GI  G A  +  H+  +VV     ++  + P  
Sbjct: 810 VED-EGKYVEPRFYVPIIPMLLVNGSVGIGFGFACTVQMHHPLDVVTVVRRMMRKNTPTQ 868

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            L+ L     G    +G+V+   T  +        + V  G     K  G    + V E+
Sbjct: 869 ALEGLRPWAVG---YSGSVVQKTTVDEEGREVVSTTHVAMGRFTTRKVKG-FPVVRVEEL 924

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIAD 298
           P+      +  ++A+L  E +++ IAD
Sbjct: 925 PWDRAIEQLRGRVAKLAEESKVLRIAD 951


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 13/168 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 752 RSIPCLVDGLKPGQRKVLFCCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEVSLMMTI 807

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  L L++  G FG+    G   A+ RY    L   A  +   +  + + +
Sbjct: 808 VGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSSLARLVFPPVDDNLLKY 867

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             NYD + + EP       P VLVNG  GI  G A+ IP +++ E+V+
Sbjct: 868 --NYDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWASKIPNYDIREIVN 913


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 50/357 (14%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 715  RSIPCMVDGLKPGQRKVMFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQSLCGTI 770

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              +AQ++    ++ LL+  GQ  FG+    G   A+ RY    L      +   L    +
Sbjct: 771  VNLAQNYVGSNNINLLVPSGQ--FGTRLAGGKDSASPRYIFTMLSPLTRLIFHPLDDPLL 828

Query: 152  DFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--DN 208
            +++  YD + + EP+      P VLVNG  GI  G +T IP HN  +++     ++  + 
Sbjct: 829  EYQ--YDDNQKIEPLWYLPIIPMVLVNGTEGIGTGWSTKIPNHNPRDIISNLRRMLNGEE 886

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            P I +    +  RG         +   G +     G  S++            D ++I +
Sbjct: 887  PKI-MHPWYKNFRGE--------IESVGHQRYLTVGNVSLL------------DNQKIEI 925

Query: 269  TEIP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI-----ELKRGAS 319
            +E+P     Q  K   LE +A    +++ + I++ ++ +     R VI     E  R  +
Sbjct: 926  SELPIGTWTQTYKENTLEPLANGSDKQKAI-ISEYKEYNTDTTVRFVISFLPGEYDRIYA 984

Query: 320  ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             +   +++++ TS  S  S+N      Y         I   +   R E   +R  YL
Sbjct: 985  EEGGFHRVFKLTSSISTSSMNAFDDKSYLKRYDHANDIFHEYYKLRIEYYGKRKAYL 1041


>gi|32453406|gb|AAP58315.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 60

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  LL D+
Sbjct: 1   PHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDI 60


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 16  ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           I S+ I+D +    + +++  N+   R+IP + DGLKP  R++LFG  +  +    K +K
Sbjct: 761 IQSLPISDFVNKELILFSMADNI---RSIPSVADGLKPGQRKVLFGCFKRNLT---KEIK 814

Query: 74  CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A+++G V  K  YH HG A++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 815 VAQLAGYVSEKTAYH-HGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLAGGKDAAS 873

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY    L +    +        +++    DG   EP       P VL+NG  GI  G +
Sbjct: 874 ARYIFTNLPRMTRAIFHPADDGLLNYLIE-DGMSIEPDYFMPTVPMVLINGADGIGTGWS 932

Query: 188 TNIPTHNLGEVVD 200
           T IP +N  ++V+
Sbjct: 933 TAIPNYNPVDIVE 945


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 156/375 (41%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 690  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 746

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 747  AGSVGEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 805

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L      L       T+ F   YD + + EP       P VL+NG  GI  G +   
Sbjct: 806  FTMLSPLTRLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKT 863

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 864  PNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQYVIN-GEV 912

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 913  AILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + VI++     A+     L++   LQ+  + N + L    G   +  T++ ILK F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFF 1022

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1023 ELRLKYYGLRKEWLL 1037


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 148/356 (41%), Gaps = 56/356 (15%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +YLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 691  TYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 747

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 748  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 806

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +  I
Sbjct: 807  FTMLSSLARLLFPPKDDHTLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKI 864

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ E+V+    ++D  +            P  P+     G       N Y    G +
Sbjct: 865  PNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVIS-GEV 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 914  AILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTD 963

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
               + V+++     A+     L++   LQ+  + N + L       F  +G LK +
Sbjct: 964  TTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVL-------FDHVGCLKKY 1012


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 152/350 (43%), Gaps = 39/350 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF  ++  +   K   K A+  G V     YH HG  ++   +
Sbjct: 706  RSIPSMVDGFKPSQRKVLFCALKRNL---KSDTKVAQFVGYVSEHSAYH-HGEQSLESCI 761

Query: 98   ARMAQDWS----LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD++    L LL   GQ       G   A+ RY   RL K    +      D +++
Sbjct: 762  VGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYTRLSKYTRTIFHPDDDDVLEY 821

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G   EP   C   P VLVNG  GI  G +TN+ +++  E++    A+I    ++L
Sbjct: 822  LTE-EGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPREIIHLLRALIRG--VEL 878

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +    RG  F TG+V       KN Y           V  +   S DR  + +TE+P 
Sbjct: 879  HDIHPWYRG--F-TGSV---ERNDKNGYDF---------VGKVRMASDDR-TVDITELPV 922

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN-QLYRYTS 332
            +       +   +L  +  +V +  L              L+  A+  V+ +  L +   
Sbjct: 923  KT----WTQNYKDL--DTLVVSVILLGRYHTEHSVHFKCTLQNEAAKSVVDSLGLEKAFK 976

Query: 333  LQSLFS-VNMVALN-GYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNK 379
            L+S FS  NMV  +   K  R+ +++ I+K F   R ++ V+R   L+ K
Sbjct: 977  LRSAFSTTNMVLFDRDGKIRRYDSVLDIIKDFADLRLDMYVKRKDSLIAK 1026


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 160/367 (43%), Gaps = 44/367 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F  ++     +K+ VK A+++G V     YH HG  ++   +
Sbjct: 721  RSIPSMIDGLKPGQRKVIFTCIKRN---DKREVKVAQLAGSVAEHSAYH-HGEQSLAMTI 776

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+E +G FG+    G   A+ RY    +      +      D +  
Sbjct: 777  VNLAQNYVGSNNINLLEPRGQFGTRLSGGKDSASPRYIFTLMSPLTRLIFHP-HDDPLLV 835

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID--NPDI 211
                D    EPV      P VLVNG  GI  G +T IP +N  ++ +    ++D   P +
Sbjct: 836  HEFEDNQKIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLDGEKPKV 895

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             +    +  +G             G  + Y       VI G + I    GD+  I +TE+
Sbjct: 896  -MHPWYKNFKG----------NVEGFGDKY-------VISGEAAI--LPGDK--IEITEL 933

Query: 272  PYQVNKAAMLEKIAE--LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            P         E + E  L  +K    I++ R+ +     R V+ L  G  +++    +++
Sbjct: 934  PVGTWTHNYKENVLEPMLGTDKVKPLISEYREYNTDTTVRFVVSLLPGKLSEIEAEGIHK 993

Query: 330  YTSLQSLFSVNMVALNGYKP----ERFTLI-GILKAFVAFREEVVVRRTKYLLNKARDRA 384
               LQ+  +++M  +N +      E++  +  IL+ F   R +  VRR  YL  + +  A
Sbjct: 994  VFKLQT--TISMTCMNAFDYNCCLEKYDKVEEILREFYDLRVKYYVRRKDYLEGQLQAEA 1051

Query: 385  HVLVGLA 391
              L   A
Sbjct: 1052 DKLSNQA 1058


>gi|329725076|gb|EGG61570.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU144]
          Length = 379

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 142/301 (47%), Gaps = 34/301 (11%)

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           L+L RLT    + ++ E   L   IKE  +IL +   LL +IK EL  +K +    R + 
Sbjct: 2   LQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVDRLST 61

Query: 520 IVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           I   + +++ D++ +V  E+++++++  GY+KR     + A      G + + ++D D +
Sbjct: 62  IEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNAS-----GVTEIGLKDGDRL 116

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPF 636
                V+T  +VL F++ G     +   +P+      R K L        G+ I+ I+P 
Sbjct: 117 LKHESVNTQDTVLVFTNKG-----RYLFIPVHKLADIRWKEL--------GQHISQIVPI 163

Query: 637 PEDESS---------WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEIL 685
            EDE            N  + + ATK+G ++++  S F +  R  K  I MK+  +DE++
Sbjct: 164 DEDEEVVNVYNEKDFKNEAFYIMATKNGMIKKSSASQF-KTTRFNKPLINMKVKDKDELI 222

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +V     +  I + T  G  + +  + +    G  + GV+ I+L   D V+    V  +D
Sbjct: 223 NVVRLESDQLITVLTHKGMSLTYSTNELSD-TGLRAAGVKSINLKDEDYVVMTEDVNDSD 281

Query: 746 A 746
           +
Sbjct: 282 S 282



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 121/264 (45%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+HG ++R     F   N SG   + L   D +L  E+   ++ +L+ T  G+ +  P+ 
Sbjct: 87  TQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVH 143

Query: 712 AIRVFAGRNSVGVRGISLAKG-DQVISM-----AIVLHADADYDERICYMKHMSAQRRLI 765
            +          +R   L +   Q++ +      + ++ + D+     Y+  M+ +  +I
Sbjct: 144 KL--------ADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYI--MATKNGMI 193

Query: 766 --SGDTEEITSLKNDSSVEGNISE--ERCQELKLK-EQFILTVSEKGFGKRTSSYDFRIS 820
             S  ++  T+  N   +   + +  E    ++L+ +Q I  ++ KG      S  +  +
Sbjct: 194 KKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGM-----SLTYSTN 248

Query: 821 NRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             S  G+RA  V  IN  +   +V    VND+D II+V+ +G + R+  N ++ A RA +
Sbjct: 249 ELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNVLQEAKRAQR 308

Query: 879 GVVIFSTAKDE--RVVSVERIRES 900
           G+ +    K +  R+V+   ++E+
Sbjct: 309 GITLLKELKKKPHRIVAGAVVKEN 332



 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 779 SSVEGNISEERCQELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           S++E  ISE +  +  +   E+ IL++++ G+ KRTS+  F  S  +  G++  D     
Sbjct: 60  STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD----- 114

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVN---EIRIASRATKGVVIFSTAKDERVVS 893
               L+    VN  D +++ ++KG  + +PV+   +IR          I    +DE VV+
Sbjct: 115 ---RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVN 171

Query: 894 V 894
           V
Sbjct: 172 V 172


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 15/181 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++LF   +  +   K  +K A+++G V     YH HG  ++   +
Sbjct: 732 RSIPSIMDGLKPGQRKVLFSCFKRKL---KDEIKVAQLAGYVSEHSAYH-HGEMSLAGTI 787

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQ +    +L LLL  GQ  FG+    G   A+ RY    L   A  +   L  D +
Sbjct: 788 VGMAQRFVGSNNLNLLLPIGQ--FGTRLAGGKDAASSRYIFTSLSPLARKIFH-LADDAL 844

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
                 DG   EP       P VLVNG  GI  G ++++P +N  ++V+  +A+I+  + 
Sbjct: 845 LNHLEDDGQTIEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQEP 904

Query: 212 D 212
           D
Sbjct: 905 D 905


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 15/181 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++LF   +  +   K  +K A+++G V     YH HG  ++   +
Sbjct: 698 RSIPSIMDGLKPGQRKVLFSCFKRKL---KDEIKVAQLAGYVSEHSAYH-HGEMSLAGTI 753

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQ +    +L LLL  GQ  FG+    G   A+ RY    L   A  +   L  D +
Sbjct: 754 VGMAQRFVGSNNLNLLLPIGQ--FGTRLAGGKDAASSRYIFTSLSPLARKIFH-LADDAL 810

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
                 DG   EP       P VLVNG  GI  G ++++P +N  ++V+  +A+I+  + 
Sbjct: 811 LNHLEDDGQTIEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQEP 870

Query: 212 D 212
           D
Sbjct: 871 D 871


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 171/384 (44%), Gaps = 40/384 (10%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            IT + I+D +    + +++  NV   R+IP + DG KP  R++L+G  +  +   +  +K
Sbjct: 727  ITEIPISDFINKELILFSMSDNV---RSIPSVLDGFKPGQRKVLYGCFKKKL---RSEIK 780

Query: 74   CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
             A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A
Sbjct: 781  VAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGKDFSA 839

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L +    + + L      +  + D    EP       P +LVNG  GI  G +
Sbjct: 840  ARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIGTGWS 898

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP++N  ++V     +++      + L E+   P +      L   G +    +GR  
Sbjct: 899  TNIPSYNPKDLVANIRRLMNG-----EELQEMT--PWYKGWGGDLEPMGPQKFKVSGR-- 949

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE-KIAELVREKRIVDIADLRDESDRQ 306
                    IE+   D   + +TEIP +     + E  ++    EK    I D+ +E    
Sbjct: 950  --------IEQI--DSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDM-EEHHTT 998

Query: 307  GYRVVIELKRGASADVI-LNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
              R V++L        + +  L R+  + SL   NMVA +  G   +   ++ I+K F  
Sbjct: 999  SIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKDFYY 1058

Query: 364  FREEVVVRRTKYLLNKARDRAHVL 387
             R E   +R  Y+ +  +++  +L
Sbjct: 1059 VRLEYYQKRKDYMTDNLQNQLLML 1082


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 11/174 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP   DGLKP  R++L+   +  +   K  +K A+++G       YH HG A++   +
Sbjct: 708 RSIPSAIDGLKPSQRKVLYACFKRKL---KSEIKVAQLTGYCAEHTAYH-HGEASLQSTI 763

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S  + L+   G FG+  + G   A+ RY    L   A  L  +   DT+  
Sbjct: 764 IGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYTYLAPIARSLFPE-ADDTLLS 822

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
               DG   EP   C   P ++VNG  GI  G +T IP H+  +V++  +A +D
Sbjct: 823 YLEDDGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPHSANDVLEYILAKLD 876


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1272

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 16/193 (8%)

Query: 16  ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + S+ I+D +    + +++  N+   R+IP + DGLKP  R++LFG  +  +    K +K
Sbjct: 762 VQSLPISDFVNKELILFSMADNI---RSIPSVADGLKPGQRKVLFGCFKRNL---TKEIK 815

Query: 74  CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A+++G V  K  YH HG A++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 816 VAQLAGYVSEKTAYH-HGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLAGGKDAAS 874

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY    L +    +        +++    DG   EP       P VL+NG  GI  G +
Sbjct: 875 ARYIFTNLPRMTRAIFHPADDGLLNYLVE-DGMSIEPDYFMPTVPMVLINGADGIGTGWS 933

Query: 188 TNIPTHNLGEVVD 200
           T IP +N  ++V+
Sbjct: 934 TAIPNYNPVDIVE 946


>gi|1542969|gb|AAB08038.1| topoisomerase IV subunit; Method: conceptual translation supplied
           by author [Streptococcus pneumoniae]
          Length = 69

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 47/69 (68%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W    +
Sbjct: 1   KPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEI 60

Query: 110 LIEGQGNFG 118
           L+E  GN G
Sbjct: 61  LVEMHGNNG 69


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++L+      +    K     R++GEV  +  YH HG  ++ + +
Sbjct: 666 RSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRLTGEVASVAGYH-HGEKSLTETI 724

Query: 98  ARMAQDW-----SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLL----DDL 146
             MAQD+     ++RLL     G+FG+    G   +A RY    ++K A  +     DDL
Sbjct: 725 IGMAQDFVGCGNNVRLL--NPDGSFGTRLRGGKDHSASRYLSSFVEKIARVVFPPEDDDL 782

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
            +   +     D  + EP+      P ++VNG  GI  G +T IP HN  EV 
Sbjct: 783 YEKVFE-----DNEYNEPINYIPIIPLIVVNGACGIGTGHSTEIPPHNPLEVC 830


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 23/227 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +    K +K A+ S
Sbjct: 644 IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVAQFS 699

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
           G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 700 GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 758

Query: 133 CRLQKAAH--FLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             L       F  DD      D   NY   DG   EP       P VLVNG  GI  G +
Sbjct: 759 TLLSPITRSIFPKDD------DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWS 812

Query: 188 TNIPTHNLGEVVDGCVAVI-DNPDIDLDALMEIIRGPDFPTGAVILG 233
           T IP +N  ++V     ++ D P   +D      +G    TG    G
Sbjct: 813 TFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGG 859


>gi|289064508|gb|ADC80576.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 27/174 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 762 RSIPSIADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEASLAATI 817

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY--TECR-LQKAAHFLLDD----- 145
             +AQD+  S  L L+   G +G+  + G   AA RY  T  + + +A +   DD     
Sbjct: 818 INLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPLLNY 877

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           L  D V   P +      P V     P VL+NG  GI  G +TNIP +N  ++V
Sbjct: 878 LKDDDVPIEPEW----YMPTV-----PMVLINGAEGIGTGWSTNIPPYNPVDIV 922


>gi|3510609|gb|AAC33554.1| topoisomerase IV subunit A [Chlamydia trachomatis]
          Length = 97

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G 
Sbjct: 4   LSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
            M   HPHG+A I +AL  +A     +  LIE QGNFG+
Sbjct: 61  TMA-LHPHGDAPIVEALVVLAN----KRFLIETQGNFGN 94


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 27/174 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 777 RSIPSIADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEASLAATI 832

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY--TECR-LQKAAHFLLDD----- 145
             +AQD+  S  L L+   G +G+  + G   AA RY  T  + + +A +   DD     
Sbjct: 833 INLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPLLNY 892

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           L  D V   P +      P V     P VL+NG  GI  G +TNIP +N  ++V
Sbjct: 893 LKDDDVPIEPEW----YMPTV-----PMVLINGAEGIGTGWSTNIPPYNPVDIV 937


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EHI  +   E+ G+  ++ +D +    + ++I     R+IP++ DGLK  HR+ L+  
Sbjct: 732 MAEHIEGT-FLEQFGVKKLTYSDFINKELVLFSI-ADCERSIPNIVDGLKTSHRKTLYSC 789

Query: 61  MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
            +  +   KK +K A++ G V     YH HG A++Y  +  MAQ++  S  + L+   G+
Sbjct: 790 FKRNL---KKEIKVAQLIGYVSEHSAYH-HGEASLYSTIVGMAQEFVGSNNINLLNPAGS 845

Query: 117 FGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           +G+    G   ++ RY   RL   A    H   D +    VD     DG   +P      
Sbjct: 846 YGTRIAGGKDCSSARYIHTRLNDIARAVYHADDDPILSCVVD-----DGKKVQPKFYIPV 900

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
            P +LVNG  GI  G ++ IP +N  +++      ID
Sbjct: 901 IPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAID 937


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 88/174 (50%), Gaps = 27/174 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 777 RSIPSIADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEASLAATI 832

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY--TECR-LQKAAHFLLDD----- 145
             +AQD+  S  L L+   G +G+  + G   AA RY  T  + + +A +   DD     
Sbjct: 833 INLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRYIFTNAKSITRAIYHPFDDPLLNY 892

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           L  D V   P +      P V     P VL+NG  GI  G +TNIP +N  ++V
Sbjct: 893 LKDDDVPIEPEW----YMPTV-----PMVLINGAEGIGTGWSTNIPPYNPVDIV 937


>gi|289064510|gb|ADC80577.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 S 119
           S
Sbjct: 61  S 61


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 112/246 (45%), Gaps = 39/246 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP L DG KP  R++LF   +  +   KK +K  +++G V     YH HG  ++   +
Sbjct: 710 RSIPCLVDGFKPSQRKVLFSCFKRNL---KKEIKVVQLAGYVSEHSAYH-HGETSLNGTI 765

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAH--FLLDDLGKDTV 151
             MAQ++  S  L L+   G FG+  + G   A+ RY    LQKAA   F  DD   D +
Sbjct: 766 TAMAQNFTGSNNLNLLTPGGQFGTRLMGGKDAASPRYIFTALQKAARAVFHPDD---DAL 822

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
               + DG   EP       P +LVNG  GI  G ++N+P ++  +V++           
Sbjct: 823 LTYLDDDGLSIEPEFYMPIIPLILVNGSDGIGTGWSSNVPNYSPHDVIEN---------- 872

Query: 212 DLDALMEIIRGPDF----PTGAVILGRTGIKNAYATGRGSIVIRGVSH-IEKTSGDREQI 266
               L   I+G  F    P      G    K       GS  +RG+++ I+ T+     +
Sbjct: 873 ----LKRRIKGDKFVEMQPWYKGFAGSIEAKVGKKGFEGSYTVRGIANRIDDTT-----V 923

Query: 267 VVTEIP 272
            +TE+P
Sbjct: 924 EITELP 929


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 92/204 (45%), Gaps = 22/204 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +  +    K +K A+ SG V     YH HG  ++  
Sbjct: 700 LLRSIPSMVDGLKPGQRKILFCSFKRNLV---KEIKVAQFSGYVSEHSAYH-HGEQSLAS 755

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAH--FLLDDLGKD 149
            +  MAQD+  S  + L++  G FG+ D  G   A+ RY    L       F  DD    
Sbjct: 756 TITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLSPITRSIFPKDD---- 811

Query: 150 TVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
             D   NY   DG   EP       P VLVNG  GI  G +T IP +N  ++V     ++
Sbjct: 812 --DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLL 869

Query: 207 -DNPDIDLDALMEIIRGPDFPTGA 229
            D P   +D      +G    TG 
Sbjct: 870 NDEPVEPMDPWYRGFKGSIQKTGT 893


>gi|157890137|dbj|BAF81267.1| topoisomerase IV, A subunit [Pseudomonas putida]
          Length = 68

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M ++G++ + K+ K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQG
Sbjct: 1   IVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYTLVDGQG 60

Query: 116 NFGSVDGDP 124
           N+G+ D DP
Sbjct: 61  NWGAPD-DP 68


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3)
           [Monodelphis domestica]
          Length = 1548

 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 714 RSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 769

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ F
Sbjct: 770 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPAKDDQTLKF 829

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
              YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D
Sbjct: 830 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMD 882


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus anatinus]
          Length = 1746

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 165/390 (42%), Gaps = 72/390 (18%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 741  RSIPSMVDGLKPGQRKVLFTCFRRN---DKREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 796

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L      +T+ F
Sbjct: 797  INLAQNFVGSNNVNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPVKDDNTLKF 856

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G +  +P +++ EVV+    ++D  +  
Sbjct: 857  L--YDDNQRVEPEWYIPIVPMVLVNGAEGIGTGWSCKLPNYDVREVVNNIRRMMDGEEP- 913

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI--------VIRG-VSHIEKTSGDR 263
                      P  P+             Y   +G+I        VI G VS ++ T+   
Sbjct: 914  ---------LPMLPS-------------YKNFKGTIDELAPNQYVINGEVSILDSTT--- 948

Query: 264  EQIVVTEIP----YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              I ++E+P     QV K  +LE +     EK    I D R+       + ++++     
Sbjct: 949  --IEISELPVRTWTQVYKEQVLEPMLNGT-EKTPALIVDYREYHTDTTVKFIVKMTEQKL 1005

Query: 320  ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKY 375
            A+     L++   LQ+  + N + L       F  +G LK +       R+   +R   Y
Sbjct: 1006 AEAEAAGLHKVFKLQTNLTCNSMVL-------FDHVGCLKKYDTALDILRDFFELRLKYY 1058

Query: 376  LLNKARDRAHVLVG-LAIAVANLDEVVRII 404
             L     R   LVG L    A L+   R I
Sbjct: 1059 GL-----RKEWLVGMLGAESARLNNQARFI 1083


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 11/176 (6%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP++ DGLKP  R+I+F   +  +   K  VK +++SG V     YH HG A++  
Sbjct: 691 LERSIPNMVDGLKPGQRKIMFACFKRNL---KTDVKVSQLSGYVSEHSAYH-HGEASLSG 746

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  +AQD+  S  +  +  QG FG+    G   A+ RY   RL      L ++     +
Sbjct: 747 TIVGLAQDFVGSNNVNYLVPQGQFGTRLQGGKDAASPRYIFTRLAPLTRHLFNEHDDRLL 806

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
            +  N +G   EP       P VLVNG  GI  G +T+IP  N  ++V     ++D
Sbjct: 807 AYL-NEEGQSIEPEWYMPVVPTVLVNGAEGIGTGWSTSIPNFNPRDIVANLRLMLD 861


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 44/283 (15%)

Query: 17  TSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           T +SI+D +    + +++  N+   R+IP L DGLKP  R+++F   +  +   +  +K 
Sbjct: 641 TQISISDFVNKELILFSMADNI---RSIPSLVDGLKPGQRKVIFSCFKRNL---RSEIKV 694

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPA 126
           A++ G V     YH HG  ++   +  +AQD+    ++ LLL  GQ  FGS    G   A
Sbjct: 695 AQLVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQ--FGSRLQGGKDAA 751

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           + RY    L      + ++   D +    N D    EP       P VLVNG  GI  G 
Sbjct: 752 SPRYIFTSLSPLTRMIFNE-NDDAILNYLNDDNFSIEPEFYVPIIPMVLVNGAEGIGTGW 810

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           +T+IP  N  +VV+               +  +IRG D P   V   R         G G
Sbjct: 811 STSIPNFNPVDVVEN--------------IRRMIRGED-PVEMVPYYRNFRGTIEKIGEG 855

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAE 286
              + G+       GD + + +TE+P   + +N    LE + +
Sbjct: 856 KFQVSGIYE-----GDMD-LEITELPVGTWTLNYKEFLESLVQ 892


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 23/227 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +    K +K A+ S
Sbjct: 644 IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVAQFS 699

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
           G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 700 GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 758

Query: 133 CRLQKAAH--FLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             L       F  DD      D   NY   DG   EP       P VLVNG  GI  G +
Sbjct: 759 TLLSPITRSIFPKDD------DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWS 812

Query: 188 TNIPTHNLGEVVDGCVAVI-DNPDIDLDALMEIIRGPDFPTGAVILG 233
           T IP +N  ++V     ++ D P   +D      +G    TG    G
Sbjct: 813 TFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGG 859


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 157/381 (41%), Gaps = 47/381 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  ++ITD +    + +++   L R+I  + DGLKP  R++++   Q  +   K  +K A
Sbjct: 637 VKQLNITDFVHKDLVNFSL-ADLKRSIAHVADGLKPSQRKVMYSCFQKNL---KDEMKVA 692

Query: 76  RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           +++  V  K  YH HG  ++ + + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 693 QLAAYVAEKSAYH-HGEVSLAETIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTR 751

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y   +L K A  L D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 752 YIFTKLTKEARKLFDPKDDAILNYLDD-DGRSIEPDFYMPTLPMVLVNGTEGIGTGFSCY 810

Query: 190 IPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP  N  ++ +     ++    ID+       +G  F                    G  
Sbjct: 811 IPPFNPDDIKENIKRSLEGESPIDMKPWFRGFKGKVFKDDV----------------GLW 854

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +  GV    + +G R  + VTE+P         E +  LV +K I    +     D    
Sbjct: 855 ITEGVW---RDTGSR--LKVTELPPGRWTQDYKEYLDTLVDKKMITSFTNNSTTED---- 905

Query: 309 RVVIELKRGASADVILNQLYR---YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            V  E+   +  D+I +   R   +T+   LF           PE      ILK FV  R
Sbjct: 906 -VDFEIFGYSGKDLIKDLKLRKTFHTTNMHLFHPTKGIYKYTSPEE-----ILKDFVELR 959

Query: 366 EEVVVRRTKYLLNKARDRAHV 386
            E   +R  +L++    RA +
Sbjct: 960 LEHYKKRKAHLIDVLEKRAEM 980


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 23/222 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +    K +K A+ S
Sbjct: 682 IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNL---VKEIKVAQFS 737

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
           G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 738 GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 796

Query: 133 CRLQKAAH--FLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             L       F  DD      D   NY   DG   EP       P VLVNG  GI  G +
Sbjct: 797 TLLSPITRSIFPKDD------DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWS 850

Query: 188 TNIPTHNLGEVVDGCVAVI-DNPDIDLDALMEIIRGPDFPTG 228
           T IP +N  ++V     ++ D P   +D      +G    TG
Sbjct: 851 TFIPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTG 892


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 165/370 (44%), Gaps = 57/370 (15%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            ++ +S TD +    + +++  NV   R+IP + DGLKP  R++L+   +  +   KK +K
Sbjct: 778  VSKISYTDFINKELILFSMADNV---RSIPSVVDGLKPGQRKVLYTCFRRNL---KKDMK 831

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
               ++G V G   + HG+ ++   +  +AQ             +FG  D    A+ RY  
Sbjct: 832  VVELAGHVSGMTAYQHGDISLQQTIVGLAQ-------------SFGGSDC---ASARYIY 875

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL   A  +        + +  + DG   EP +     P +LVNG  GI  G +++IP 
Sbjct: 876  TRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSSSIPN 934

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +N  ++VD    ++D          E  R    P      G TG      T  G    + 
Sbjct: 935  YNPEDIVDNLKRLMDG---------EETR----PMQPWFRGFTG----EVTDVGGDRFK- 976

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVV 311
             S I K +G++E + +TE+P +       +K+ ++++ EK    I D +D      Y   
Sbjct: 977  FSGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKD------YNTH 1029

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVV 369
             +  + A ++ +     ++   +++ + N+VA +  G   +  T+  ILK F  +R +  
Sbjct: 1030 TKNMKSALSEGLEE---KFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTYRLKFY 1086

Query: 370  VRRTKYLLNK 379
             +R +Y L++
Sbjct: 1087 EKRKQYQLSQ 1096


>gi|91093533|gb|ABE11588.1| ParC [Escherichia coli]
          Length = 68

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAH 140
           GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K + 
Sbjct: 1   GKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSE 59

Query: 141 FLLDDLGK 148
            LL +LG+
Sbjct: 60  LLLSELGQ 67


>gi|145308241|gb|ABP57384.1| ParC [Brucella abortus]
          Length = 260

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 125/280 (44%), Gaps = 46/280 (16%)

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NL
Sbjct: 1   LNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNL 60

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR    P   ++ELM+                             L++VQ  +I
Sbjct: 61  DEVIRIIREEDEP---KQELMR--------------------------VFELTDVQAESI 91

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--- 514
           L +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++      
Sbjct: 92  LNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTR 151

Query: 515 --PRRTRIVEG-LLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              RRT        D+ED  +  I RE + + VS  G++        RA +      S +
Sbjct: 152 LGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTL 203

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             ++ D +   F   T   +LFF++ G  +      LP G
Sbjct: 204 SFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG 243


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 13/203 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T + I D +    + +++   L R+IP L DGLKP  R+++FG  +  +   K  +K  
Sbjct: 674 LTEIQIGDFINKELILFSLADNL-RSIPHLLDGLKPSQRKVIFGSFKRNI--MKTEIKVQ 730

Query: 76  RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            ++  V G+  YH H   ++   +  +AQD+  +  + L+  +G FG+    G   AA R
Sbjct: 731 ELAAYVSGQTAYH-HTEQSLVQTIVSLAQDFVGANNIYLLMPRGAFGTRATGGKDAAAAR 789

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y   +L   +  + + L    + +  + D    EP       P VLVNG  GI  G +T+
Sbjct: 790 YIFTQLNSISKHVFNPLDNPLLTYVQD-DEKTVEPEWYVPALPMVLVNGAEGIGTGWSTS 848

Query: 190 IPTHNLGEVVDGCVAVI--DNPD 210
           IP  N  ++V+    ++  D PD
Sbjct: 849 IPPFNPIDIVNNLRKLMRGDEPD 871


>gi|4140432|gb|AAD04051.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 55

 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           NFGS+DGDP AA RYTE RL  +A FLL+DL KDTVD  PNYD +  EPVV  ++
Sbjct: 1   NFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSK 55


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 27/176 (15%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG A++  
Sbjct: 694 LARSIPSMVDGLKPGQRKILFCCFKRNF---VTQAKVAQFSGYVSEHSAYH-HGEASLAS 749

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERY--------TECRLQKAAHFLL 143
            +  MAQ++  S  + L+  +G FG+ +  G   A+ RY        T     +A   LL
Sbjct: 750 TIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYIFTCLAPITRALFPQADDVLL 809

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D L +D         G   EP   C   P VLVNG  GI  G ++ +P +N  E+V
Sbjct: 810 DYLKED---------GQSIEPTWYCPIIPLVLVNGSEGIGTGWSSFVPNYNPREIV 856


>gi|36988526|gb|AAQ87918.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 73

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 3/73 (4%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP--AAERYTE 132
            DP   AA RYTE
Sbjct: 62  -DPKSFAAMRYTE 73


>gi|36988511|gb|AAQ87917.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 72

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 3/73 (4%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 1   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 GDPP--AAERYTE 132
            DP   AA RYTE
Sbjct: 61  -DPKSFAAMRYTE 72


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 157/375 (41%), Gaps = 52/375 (13%)

Query: 28   SYLTYA--INVIL--------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            SYLTY   IN  L         R+IP + DGLKP  R++LF   +     +K+ VK A++
Sbjct: 690  SYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFKRN---DKREVKVAQL 746

Query: 78   SGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            +G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY 
Sbjct: 747  AGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYI 805

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNI 190
               L   A  L     KD    R  YD + + EP         VL+NG  GI  G +  I
Sbjct: 806  FTMLSPLARLLFPP--KDDHTLRFLYDDNQRVEPEWYNPINTMVLINGAEGIGTGWSCKI 863

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSI 248
            P  ++ EVV+    ++D  +            P  P+     G       N Y    G +
Sbjct: 864  PNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQYVIN-GEV 912

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
             I   + IE          ++E+P +       E++ E +    EK    I D R+    
Sbjct: 913  AILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFV 362
               + VI++     A+     L++   LQS  + N + L    G   +  T++ IL+ F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1022

Query: 363  AFREEVVVRRTKYLL 377
              R +    R ++LL
Sbjct: 1023 ELRLKYYGLRKEWLL 1037


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 35/353 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++ + M       +   +K   + G VMG+  YH HG+AA+   +
Sbjct: 788  RSIPSVVDGLKPGQRKVFYVMFDRK---SNAELKVNTLVGHVMGQAAYH-HGDAALVMTI 843

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+E +G FG+  + G   A+ RY    L K    L        +D+
Sbjct: 844  VGLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAASGRYIFTALPKITRALFPQADDALLDY 903

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VL+NG  GI  G +T++P +N  E+V          DI  
Sbjct: 904  L-DDDGQKVEPHWYIPVVPQVLMNGAEGIGTGWSTSVPNYNPHEIVANLRRRTAGEDI-- 960

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                        P      G TG    ++ GR  +  R V+ I++ + +     +TE+P 
Sbjct: 961  -----------IPMKPWFRGFTGDVEEFSPGRFKVSGR-VTQIDEKTWE-----ITELPI 1003

Query: 274  QVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +   +   E + E +   EK    I D ++         ++EL     A++       + 
Sbjct: 1004 RTWTSNYKESLEERIVSSEKAQATIKDYKEYHTESTVNFIVELTAKGQAEIAEKGADAFF 1063

Query: 332  SLQSLFS-VNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
             L    S  NMV    +G   +  +   IL+ F   R     +R ++L+++ +
Sbjct: 1064 KLSCQISTTNMVLFDQDGKIKKYSSPEEILEEFYLLRLSYYQKRKEHLVDQLK 1116


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 90/192 (46%), Gaps = 11/192 (5%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV- 81
           D+  N  L       L R+IP + DG KP  R++LF   +  +   K  +K A++SG V 
Sbjct: 707 DDFINKELILFSRADLMRSIPSVVDGFKPSQRKVLFSCFKRKL---KSDIKVAQLSGYVS 763

Query: 82  -MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQ 136
               YH HG A++   +  +AQD+  S  + L+   G FG+    G   A+ RY   RL 
Sbjct: 764 EHSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIFTRLA 822

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                +  +     +D+  + DG   EP       P VLVNG  GI  G +T+IP  N  
Sbjct: 823 PICRVIFPECDDALLDYL-DEDGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIPNFNPR 881

Query: 197 EVVDGCVAVIDN 208
           ++V     ++D+
Sbjct: 882 DIVANIRRILDD 893


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 28/214 (13%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++ GI  V ITD +    + ++I     R+IP + DG K   R+ILF   +  +   KK 
Sbjct: 785 DQYGIKKVKITDFIDKELILFSI-ADCERSIPSIVDGFKTSQRKILFSCFKRNL---KKE 840

Query: 72  VKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPP 125
           +K A++ G V     YH HG+ ++  A+  +AQ +  +  + ++   G FGS    G   
Sbjct: 841 IKVAQLIGYVSEQSAYH-HGDQSLASAIIGLAQTYVGANNINVLYPGGGFGSRLAGGKDS 899

Query: 126 AAERYTECRLQKAA--------HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           +A RY   RL++ A        H LL  L  D    +P +      PV+     P +LVN
Sbjct: 900 SAPRYINTRLEEIARTLFPEEDHALLSHLTDDGKRVQPKW----YIPVI-----PMILVN 950

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           G  GI  G ++ IP +N  ++++    +I+  ++
Sbjct: 951 GSKGIGTGWSSTIPNYNPRDLIENMKLLIEGKEL 984


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 167/406 (41%), Gaps = 51/406 (12%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R++P + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 511 LARSVPSMVDGLKPGQRKILFAAFKRNF---TSQAKVAQFSGYVSEHSAYH-HGEQSLAS 566

Query: 96  ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQ++  S  + ++   G FG  S  G   A+ RY    L      +        +
Sbjct: 567 TIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTSLTPLTRTIFPKPDDILL 626

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI-DNPD 210
           +F    DG   EP       P VLVNG  GI  G +T +P +N  ++V     ++ D P 
Sbjct: 627 NFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEPL 685

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VSHIEKTSGDREQIVVT 269
             +D   +  +G            T +K+A      S  + G V  + +T+     I V 
Sbjct: 686 EPMDPWYKGFKG------------TIVKSASKESGVSYTVTGIVEQVNETT-----IRVL 728

Query: 270 EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI--- 323
           E+P   +  +    LE +     + +   I D R+ +        I L     A+ +   
Sbjct: 729 ELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFEISLSEEKMAEALAEG 788

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT-------KYL 376
           L + ++ ++  S  ++N+   +G+  +  T   IL+ F   R E+ V+R        +Y 
Sbjct: 789 LTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLELYVKRKEVQVENLQYE 848

Query: 377 LNKARDRAHVLVGLA---IAVANLDEVVRIIR-----FSPNPETAR 414
           L K  ++   ++G+    I V N      ++      F+P P+ A+
Sbjct: 849 LLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKAK 894


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP L DG KP  R+ILF   +  +   K  +K A+++G V     YH HG A++   +
Sbjct: 685 RSIPHLLDGFKPSQRKILFACFKRKL---KGEIKVAQLTGYVAEHSAYH-HGEASLQATI 740

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKA--AHFLLDDLGKDTV 151
             MAQ++  S  + L+   G FG+  + G   A+ RY   +L+    A F  DD   D +
Sbjct: 741 VNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASARYIFTKLEPITRAIFHPDD---DEL 797

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
               N DG   EP       P +LVNG  GI  G +T++  +N  E+V
Sbjct: 798 LSYINDDGVTVEPEYYVPVIPMILVNGADGIGTGWSTSVNNYNPREIV 845


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 159/387 (41%), Gaps = 48/387 (12%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + VSI D +    + ++    + R+IP + DGLKP  R++L G +Q  +    K +K  +
Sbjct: 684  SPVSIYDFINKELIQFSRQDCI-RSIPSMIDGLKPSQRKVLHGCIQRNL---TKEIKVVQ 739

Query: 77   ISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
            +SG +     YH HG  ++   +  MAQD+  S  +  +   G FG+  + G   A+ RY
Sbjct: 740  LSGYISESVLYH-HGEQSLNQTIISMAQDFVGSNNMNFLVPNGQFGTRLMGGKDSASPRY 798

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
                L      +  +     +  +   +G   EP       P VLVNG  GI  G +TN+
Sbjct: 799  IYTYLHPITKHVFREEDSALLPSQEE-EGVHIEPSYYLPILPTVLVNGAVGIGTGWSTNV 857

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGR 245
              HN  EV               DAL+  +RG     P +P     +G+   K       
Sbjct: 858  CNHNPIEVA--------------DALIAQLRGTRSNRPLYPWYRGFVGQILKKE-----N 898

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            G  V   VS I     D   + +TE+P         + + +LV +  +V     R+    
Sbjct: 899  GYQVCGNVSWI-----DENTLAITELPVGRWTQDYKQFLCDLVEQGDVV--TGFRENHTD 951

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQ---SLFSVNMVALN--GYKPERFTLIGILKA 360
                  + +K+  +A++  N+      L+   SL + N +  N  G+         I++ 
Sbjct: 952  TEVMFTVTVKKEKAAELKENREKLMKDLRLIGSLTTSNFILFNSKGHIHHYKDANEIMEE 1011

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVL 387
            F+ FR     +R + L+ +   +  +L
Sbjct: 1012 FIEFRLPFYQQRRENLMKQLDKKCKLL 1038


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/432 (21%), Positives = 179/432 (41%), Gaps = 66/432 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP++ DGLK   R+IL+   +  +      +K A+ SG V     YH HG  ++  A+
Sbjct: 183 RSIPNMMDGLKVSQRKILYSAFKKNLVHE---IKVAQFSGYVSEHSGYH-HGENSLNGAI 238

Query: 98  ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQ++    ++ +L+  GQ  FG+    G   A+ERY    L K    +        +
Sbjct: 239 VNMAQNFVGSNNINILMPNGQ--FGTRLQGGKDSASERYIFTNLNKITRMIFKKEDDAIL 296

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  + DG+F EP+      P +LVNG  GI  G +T+IP  +  ++++     + +   
Sbjct: 297 TYLKD-DGTFVEPIYYLPILPMILVNGTKGIGTGFSTDIPCFHPVQLINYIQHKLADKAY 355

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             D +      P +      + + G +     G  +I             D++ I +TE+
Sbjct: 356 TRDFV------PFYQGFQGTIEKDGDRRFITKGNYTI-------------DKQVITITEL 396

Query: 272 P---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQL 327
           P   +  +    LEK  ++++        D +D+S  +     + LK+    +D+I  + 
Sbjct: 397 PIGVWNEDYILHLEKCMDILK--------DYKDQSTDKKVYFKLTLKQPMEESDLI--KT 446

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++ ++  S+ ++N+   N        +  I   F+  R +   +R  +L+   ++   VL
Sbjct: 447 FKLSTTLSINNMNLFDHNDKLKHYNEVYEICDDFIGIRLDYYEKRRLHLIQILKEEMEVL 506

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
                 +  L      +R   N                   D+ D+++   YT  +D   
Sbjct: 507 KNKCNYINELLNDTLDLRKKTN------------------NDICDILEKKKYTKINDSYH 548

Query: 448 YLSEVQTRAILE 459
           YL ++   ++ +
Sbjct: 549 YLIKMSMDSVCQ 560


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 172/399 (43%), Gaps = 62/399 (15%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            ++ + S+S  D +    + ++ +    R+IP + DGLKP  R++L+  ++  +    K +
Sbjct: 648  DQDVDSISYEDFVHKELILFSYDD-CERSIPSVVDGLKPSQRKVLWTCLEKNI---MKEL 703

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV--DGDP 124
            K +++SG V  K  YH HG  ++   +  MAQ++    ++  LL  GQ  FGS    G  
Sbjct: 704  KVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQ--FGSRLGGGKD 760

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             AA RY   RL   + +L        +++  + D    EP       P VLVNG  GI  
Sbjct: 761  QAAARYIYTRLSSISRYLCPKDDDQILEYLIDEDRRI-EPKYYFPIIPTVLVNGADGIGT 819

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYAT 243
            G +T +  +N  ++VD C   ++    +   +    RG    TG +   + G   + Y  
Sbjct: 820  GWSTAVSNYNPLDLVDNCRRYLNGE--EFKEMKPWFRG---WTGQLRKNKDGSGYDCYGK 874

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
             R            + S D+  I +TE+P Q+   +  + + + + E +IV         
Sbjct: 875  WR------------RLSEDK--IEITELPIQIWTDSYKQHLEKCI-EAKIV--------- 910

Query: 304  DRQGY---------RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERF- 352
              +GY           VI+L +  S + I   L   +S++   + NM   N  YK  ++ 
Sbjct: 911  --KGYSEYHMVNTVHFVIDLVQPMSDEDIWTNLKLVSSVK---TTNMHLFNSEYKITKYH 965

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            T++ IL  F   R +    R K ++     +  +L   A
Sbjct: 966  TVLDILSEFCDVRMKGYEERKKAIIESMERQLMILSNKA 1004


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 59/387 (15%)

Query: 23   DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV- 81
            DE  N  L       L R+IP + DG KP  R++LF   +  +   K  +K A++SG V 
Sbjct: 703  DEFINKELILFSRADLLRSIPSMVDGFKPSQRKVLFSCFKRKL---KSDIKVAQLSGYVS 759

Query: 82   -MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECR 134
                YH HG A++   +  +AQD+    ++ LL+  GQ  FG+    G   A+ RY   R
Sbjct: 760  EHSAYH-HGEASLAMTIVNLAQDFVGSNNINLLVPSGQ--FGTRLQGGKDHASPRYIFTR 816

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L +    +  +     +++  + DG   EP       P VLVNG  GI  G +T+IP  N
Sbjct: 817  LHEICRAIFPECDDALLNYL-DEDGQRIEPDFYYPVLPLVLVNGAEGIGTGWSTSIPNFN 875

Query: 195  LGEVVDGCVAVID-------NP---DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
              +++     V++       +P   + +   + EI++G                ++  T 
Sbjct: 876  PRDIISNIKLVLEGEEARQMHPWYRNFNGSIVEEIVKG----------------DSRYTV 919

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GS +IR          D   + +TE+P   +  +    LE +     +     I D ++
Sbjct: 920  TGSYIIR----------DECTLEITELPLRSWTTDYKDFLEDMLAPKTKNEKPFITDYKE 969

Query: 302  ESDRQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
                     VI      L    SA   + + ++ ++  S+ ++++   +G   +  + I 
Sbjct: 970  YHTDTTVHFVITMPPENLAAAQSAPGGIEKKFKLSTKVSISNMHLFNEHGAITKYASPID 1029

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDR 383
            +L+AF+  R +   +R   L+  A  +
Sbjct: 1030 VLQAFIPLRLKAYAQRRDMLIRLAESQ 1056


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 16/200 (8%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YH 86
           + ++A N+   R+IP L DGLKP  R+ILF   +  +      +K +++SG V  +  YH
Sbjct: 799 HYSWAANL---RSIPSLIDGLKPGQRKILFASFKRRL---TNEIKVSQLSGYVAEQTSYH 852

Query: 87  PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFL 142
            HG  ++   + +MA ++  S  L L+   G FG+    G   A+ RY   +L+      
Sbjct: 853 -HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYI-LQLEPVGTLP 910

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
            ++L    +++      S Q P       P +LVNG  GI VGM+T+IP  +  +++D  
Sbjct: 911 FNELDDPLLNYLEEEGESIQ-PDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIIDQL 969

Query: 203 VAVIDNPDIDLDALMEIIRG 222
           +  ++N  + L  L+   RG
Sbjct: 970 MLRLNN-QVALKKLIPWYRG 988


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 108/457 (23%), Positives = 187/457 (40%), Gaps = 74/457 (16%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +  +   K  +K A++ G V     YH HG A++   +
Sbjct: 665  RSIPSVIDGLKPGQRKVIFSCFKRNL---KTEIKVAQLVGYVSEHSAYH-HGEASLAATI 720

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              +A D+    ++ LLL  GQ  FGS  + G   A+ RY    L   +  +  +     +
Sbjct: 721  INLAHDFVGSNNINLLLPLGQ--FGSRLLGGKDSASPRYIFTNLNPLSRLIFHEHDIPIL 778

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            + +   D    EP       P VLVNG  GI  G +TNIP HN  +++     +++N + 
Sbjct: 779  ESQIE-DNLVIEPTYYVPIIPMVLVNGTDGIGTGWSTNIPNHNPLDLIKNIKRLLNNQEP 837

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +     E+I  P +      + +       + G+   V   +        ++++I V E+
Sbjct: 838  E-----EMI--PYYRNYKGTITKINAGKYISCGK---VFENI--------NKKEINVVEL 879

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            P  V   A  E + + + +     I   +D S  +   ++I +          N  +   
Sbjct: 880  PIGVWTQAYKEYLDQAIADNV---IKSFKDYSTDKTIDILIHMN---------NNEFSSK 927

Query: 332  SLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
               S+ + NMV    NG   +    + ILK F   R E   +R  Y L    D       
Sbjct: 928  LTTSISTNNMVCFDRNGKIKKYHNTLEILKDFYEVRLEFYNKRKIYRLKLLADE------ 981

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
                   L+++   +RF     T    + QR  N     ++I  ++   +T   D   YL
Sbjct: 982  -------LNKLKNKVRFIEGVITGSIIITQRPLN-----EIILELERKEFT-RYDNYEYL 1028

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    L+++++ LT    + +R E N+  IE  E
Sbjct: 1029 --------LDMKISSLTKEKINKLREEYNNKNIEYNE 1057


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 155/353 (43%), Gaps = 44/353 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            ++IP L DGLKP  R+IL+ ++    E  +  +K ++++G V  +  YH HG  ++   +
Sbjct: 1970 QSIPSLIDGLKPSQRKILWTLLNNMDESTE--IKVSQLAGAVAHRQSYH-HGEESLVRTI 2026

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLL----DDLGKD 149
             RM Q +  S  L L++  G FG+    G+  A+ RY    L      L     DDL + 
Sbjct: 2027 IRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQK 2086

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID-- 207
             V+     +G   EP  LC   P +L+NG  GI  G +T I   N  +++D     ID  
Sbjct: 2087 NVE-----EGMVVEPT-LCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSI 2140

Query: 208  NPDIDLDALMEIIRGP---DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            + + ++    E  RG      PT  +  G+  +            IR     E+ +    
Sbjct: 2141 STEYEIPPFYEEFRGKLEVVTPTKFISSGKIQL------------IRP----ERKNASTF 2184

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             I + E+P  +  +   EK++++V    +++ ++ R    R  +R+ ++ K+ +      
Sbjct: 2185 SIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSE-RHTEKRVHFRITLDRKKSSRFLQKS 2243

Query: 325  NQ-LYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            N  L  Y  L++  + N V    NG   E   +  I   F   R ++  +R K
Sbjct: 2244 NSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLK 2296


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 167/406 (41%), Gaps = 51/406 (12%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R++P + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 682  LARSVPSMVDGLKPGQRKILFAAFKRNF---TSQAKVAQFSGYVSEHSAYH-HGEQSLAS 737

Query: 96   ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  + ++   G FG  S  G   A+ RY    L      +        +
Sbjct: 738  TIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTSLTPLTRTIFPKPDDILL 797

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI-DNPD 210
            +F    DG   EP       P VLVNG  GI  G +T +P +N  ++V     ++ D P 
Sbjct: 798  NFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEPL 856

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VSHIEKTSGDREQIVVT 269
              +D   +  +G            T +K+A      S  + G V  + +T+     I V 
Sbjct: 857  EPMDPWYKGFKG------------TIVKSASKESGVSYTVTGIVEQVNETT-----IRVL 899

Query: 270  EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI--- 323
            E+P   +  +    LE +     + +   I D R+ +        I L     A+ +   
Sbjct: 900  ELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFEISLSEEKMAEALAEG 959

Query: 324  LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT-------KYL 376
            L + ++ ++  S  ++N+   +G+  +  T   IL+ F   R E+ V+R        +Y 
Sbjct: 960  LTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLELYVKRKEVQVENLQYE 1019

Query: 377  LNKARDRAHVLVGLA---IAVANLDEVVRIIR-----FSPNPETAR 414
            L K  ++   ++G+    I V N      ++      F+P P+ A+
Sbjct: 1020 LLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKAK 1065


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 159/385 (41%), Gaps = 51/385 (13%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +       K  K A+ SG V     YH HG  ++  
Sbjct: 688  LQRSIPSMVDGLKPGQRKILFCSFKRNF---VKEAKVAQFSGYVSEHSAYH-HGEQSLAS 743

Query: 96   ALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++    ++ L+   GQ    +  G   A+ RY   +L   +H       KD  
Sbjct: 744  TIIGMAQNFVGSNNINLMFPGGQFGTRAQGGKDAASPRYIFTKL---SHITRSIFPKDD- 799

Query: 152  DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            D   NY   DG   EP       P VLVNG  GI  G +T IP +N  ++V     +++ 
Sbjct: 800  DILLNYLNEDGQSIEPTWYMPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLLNE 859

Query: 209  PD-IDLDALMEIIRGP-DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
               + +       +G  +      ++G T              + G+  +     D  ++
Sbjct: 860  ESTVPMHPWYRGFKGSIEKTVNTKVVGST------------YTVTGIIEVV----DNSRL 903

Query: 267  VVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA---SA 320
             +TE+P   +  +    LE +     + ++  I D+  + D +   + I+L  G    + 
Sbjct: 904  RITELPIRRWTGDYKEFLESLGPDKNKDKVPFIEDVTAQGDNEDIYIEIQLSEGNMNIAK 963

Query: 321  DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            +  L + ++ T+     ++++   NG   +  T   IL+ F   R E  V+R + LL   
Sbjct: 964  EEGLVKKFKLTTTIGTSNMHLFDSNGKIRKYDTPEQILEEFFQLRLEFYVKRKEALLK-- 1021

Query: 381  RDRAHVLVGLAIAVANLDEVVRIIR 405
                     + + +  L+  VR IR
Sbjct: 1022 --------NIKLELKKLENKVRFIR 1038


>gi|207108362|ref|ZP_03242524.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 220

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 113/243 (46%), Gaps = 60/243 (24%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQ 704
           + F TK+G V+R  LS+F   NRS  G  A+ LD  DE++S +   +    +L+ + LG 
Sbjct: 7   LAFFTKNGVVKRTNLSEFGS-NRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGI 65

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            ++FP+  +R   GRN+ GV GI L K D V+  A+V+  D +                 
Sbjct: 66  FIKFPLEDVREM-GRNARGVIGIKLNKNDFVVG-AVVISDDGNK---------------- 107

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              +L+VSE G GK+T +  +R  +R G
Sbjct: 108 -----------------------------------LLSVSENGLGKQTLAEAYRGQSRGG 132

Query: 825 KGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           KGI    +++  + G LV+V  V+D N  +++++    +IRV + +IR   R   GV + 
Sbjct: 133 KGIIGMRLTQ--KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLI 190

Query: 884 STA 886
           +TA
Sbjct: 191 NTA 193


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 13/167 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 730 RSIPCVLDGLKPGQRKVMFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQSLCSTI 785

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G FG+    G   A+ RY    +      +   L    +++
Sbjct: 786 VNLAQNFVGSNNINLLYPGGQFGTRLAGGKDSASPRYIFTMMSALTRLIFHPLDDPLLEY 845

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           +  YD + + EP+      P VLVNG  GI  G +T IP HN  +++
Sbjct: 846 Q--YDDNQKIEPLWYLPIIPMVLVNGSEGIGTGWSTKIPLHNPRDII 890


>gi|36988551|gb|AAQ87920.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 71

 Score = 73.6 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D 
Sbjct: 1   LGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD- 59

Query: 123 DPP--AAERYTE 132
           DP   AA RYTE
Sbjct: 60  DPKSFAAMRYTE 71


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 164/386 (42%), Gaps = 35/386 (9%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +T + ++D +    + +++   + R+I  + DG KP  R++LFG  +     + +  +  
Sbjct: 760  LTHIPVSDFINKELILFSMADNM-RSIASVCDGFKPGQRKVLFGSFKRKFTVSIRVAQLV 818

Query: 76   RISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYT 131
                E  G YH HG A++   +  MAQD+  S  + L++  G FGS    G   AA RY 
Sbjct: 819  GYISEHTG-YH-HGEASLGSTIMAMAQDFAGSNNIYLMKPDGGFGSRSQGGKDAAAMRYA 876

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            +  L      + +   +   ++  + D +  EP       P +LVNG  GI  G +T+IP
Sbjct: 877  QTELMDITKAIFNKQDEPLYNYVTD-DDTPVEPEYYLPVLPMLLVNGCEGIGSGWSTSIP 935

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             +N  ++VD    ++ +              P  P      G  G       G G   ++
Sbjct: 936  PYNPLDIVDNLRRMLKDE-------------PPVPMIPWFRGWHG--EVEPVGDGRYKVK 980

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLE-KIAELVREKRIVDIADLRDESDRQGYRV 310
            G+  IE+   D   + +TE+P ++   +M E  ++ L+  K   +   + D ++  G+RV
Sbjct: 981  GL--IEQV--DERTLCITELPARMWTISMKEFLLSSLIDSKN--EKGWIEDFTEDHGFRV 1034

Query: 311  VIELKRGASADVILNQL---YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFR 365
               +           Q+    R+  + SL + NMVA +  G   +  +   I+K +   R
Sbjct: 1035 KFNITLSEKEMEKTRQIGLRERFKLISSLSTSNMVAFDPEGRIKKYDSPEAIMKEYFPVR 1094

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLA 391
             E   +R   L++    +   L   A
Sbjct: 1095 LEFYQKRKDRLVSDFEQQLEKLTAQA 1120


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV- 81
           DE  N  L       L R+IP + DG KP  R++LF   +  +   K  +K A++SG V 
Sbjct: 679 DEFINKELILFSRADLLRSIPSMVDGFKPSQRKVLFSCFKRKL---KSDIKVAQLSGYVS 735

Query: 82  -MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQ 136
               YH HG A++   +  +AQD+  S  + L+   G FG+    G   A+ RY   RL 
Sbjct: 736 EHSAYH-HGEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIFTRLH 794

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +    +  +     +++  + DG   EP       P VLVNG  GI  G +T+IP  N
Sbjct: 795 EVCRAMFPECDDALLNYL-DEDGQRIEPDYYYPVLPLVLVNGAEGIGTGWSTSIPNFN 851


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 11/168 (6%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG A++  
Sbjct: 695 LARSIPSMVDGLKPGQRKILFCCFKRNF---VTQAKVAQFSGYVSEHSAYH-HGEASLAS 750

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQ++  S  + L+  +G FG+ +  G   A+ RY    L      L        +
Sbjct: 751 TIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYIFTCLAPITRALFPQPDDVLL 810

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D+    DG   EP   C   P VLVNG  GI  G ++ +P +N  E+V
Sbjct: 811 DYMKE-DGQSIEPSWYCPIIPLVLVNGSEGIGTGWSSFVPNYNPREIV 857


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 1074

 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 159/376 (42%), Gaps = 40/376 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + ++SI++ +    + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640 VRNLSISNFVHKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76  RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696 QLAAFVAEKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755 YIFTKLTKDARKIFDPRDDPILNYLDD-DGRPIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 190 IPTHNLGEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P  N  ++ D     ++      +    +  +G  F                    GS 
Sbjct: 814 VPPFNPKDIKDNIQKALEGHGFTQMRPWFKGFKGKIFKEDE---------------SGSW 858

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +  G+ H    +G R  + +TE+P         E +  LV +K I +  +    +D   +
Sbjct: 859 IAEGIWH---DTGSR--LKITELPPGRWTQDYKEYLDTLVEKKVITNFTN-NSTTDDVDF 912

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            +V    +    D+ L + + +TS   LF           PE      ILK FV  R + 
Sbjct: 913 EIVGYSGKDLVKDLKLRKSF-HTSNMHLFHPTKGIYKYNSPEE-----ILKDFVDLRLDH 966

Query: 369 VVRRTKYLLNKARDRA 384
             +R ++L+   + +A
Sbjct: 967 YKKRREHLIKVLQTKA 982


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DG KP  R++L+   +  +   K  +K A++ G V     YH HG  ++   +
Sbjct: 687 RSIPSVLDGFKPGQRKVLYSCFKRKL---KSEIKVAQLIGYVSEHTSYH-HGEQSLAQTI 742

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S  + L++  G FG+    G   AA RY    L      + + L    + +
Sbjct: 743 VGMAQDYVGSNNIYLLKPNGAFGTRAAGGKDSAAPRYIFTELNNITPNIFNPLDNPLLTY 802

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               D +  EP       P +LVNG  GI  G +TNIP  N  E+V     +++   +D
Sbjct: 803 LQEDDQTI-EPQWYLPVIPMILVNGAEGIGTGWSTNIPCFNPLEIVQNIKKLMNGEPMD 860


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 21/221 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EH+      E+ G+  +S TD +    + ++I     R+IP + DGLK   R+IL+  
Sbjct: 631 MAEHV-EGTYLEQYGVGKLSYTDFINKELILFSI-ADCERSIPSIVDGLKTSQRKILYSC 688

Query: 61  MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
            +  +   KK +K A++ G V     YH HG  ++Y  +  MAQ++  S    L+   G 
Sbjct: 689 FKRNL---KKEIKVAQLIGYVSEHSAYH-HGEMSLYSTILGMAQEYIGSNNANLLYPSGA 744

Query: 117 FGS--VDGDPPAAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           +G+    G   ++ RY   RL   A  L     D++    VD     DG   +P      
Sbjct: 745 YGTRIQGGKDASSARYIHTRLTDVARALYHPDDDNILACVVD-----DGKKVQPKHYIPI 799

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            P +LVNG  GI  G +T IP++N  ++V+    +++  ++
Sbjct: 800 IPMILVNGTVGIGTGWSTTIPSYNPRDLVENMKLLLNKQEL 840


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 176/415 (42%), Gaps = 65/415 (15%)

Query: 8    SDEEEE--KGITSVSITDEMQNSYLTYAINVI----------LGRAIPDLRDGLKPVHRR 55
            SDE +   +G   VS T++++ + L Y   V           L R+IP L DGLKP  R+
Sbjct: 675  SDERKRWIRGSDEVSTTEDVEKTELNYEEFVNSQLMQFGMADLKRSIPSLIDGLKPSQRK 734

Query: 56   ILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLI 111
            IL+ +++M        +K ++++G V  +  YH HG  ++   + RM Q +  +  + L+
Sbjct: 735  ILWTLLKMD---ETTEMKVSQLAGAVAHRQSYH-HGEESLVRTIVRMGQTFCGASNMPLL 790

Query: 112  EGQGNFGS------VDGDPPAAERYTECR--LQKAAHF---------------------- 141
            +  G FG+      +   PP   R++E R  L+K                          
Sbjct: 791  QPIGQFGTRHEVRVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTT 850

Query: 142  -LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             LL  +  D +  +   +G   EP  LC   P +LVNG  GI  G +T +   N  +V+D
Sbjct: 851  RLLFPIADDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVID 910

Query: 201  GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                 ID   + ++ +       D+     I+  T      +TG+  I     S  E+ +
Sbjct: 911  MIRRKIDLSSLVVNEIPPFYE--DYKGKIEIVTPTKF---ISTGKIKI-----SRPERKN 960

Query: 261  GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
                 + ++E+P  V  +   EK++ ++ +  I + ++ R    +  +R++ + K+ A  
Sbjct: 961  ASTFSVEISELPIGVWTSKYKEKLSNILEKLPITEFSE-RHTEKQVNFRLIFDRKKAARF 1019

Query: 321  DVILNQ-LYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRR 372
                N  L  Y  L++  + N V    NG   E   +  I   F   R+++  +R
Sbjct: 1020 LQKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKR 1074


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 157/360 (43%), Gaps = 39/360 (10%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP +R   KP  R++LF   +  +   +  +K A+++G V     YH HG A++   +
Sbjct: 394 RSIPSVR--FKPSQRKVLFCCFKRNL---RAELKVAQLAGYVSEHSAYH-HGEASLQGCI 447

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S  + L+   G FGS  + G   A+ RY    L++    +   L  D + +
Sbjct: 448 VNMAQDFVGSNNIHLLPPIGQFGSRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKY 507

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
               DG   EP       P VLVNG  GI  G +   P +N  +++ G   +I+  +I  
Sbjct: 508 LSE-DGQSIEPEWYIPIIPMVLVNGSDGIGTGWS---PNYNPLDIIKGLRQMINGEEI-- 561

Query: 214 DALMEIIRGPDFPTGAVILGRTGIK-NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                    P  P      G    K N+  T  G+ +++G+  +     D   +VV+E+P
Sbjct: 562 --------APLTPWYREFTGHIVEKANSRGTDTGNYIVQGLYEVT----DDSTLVVSELP 609

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI-----LNQL 327
            +       + +  L+    I D  +  + +D +     I +++ A +DV      + + 
Sbjct: 610 VKSWTQTYKQFLEGLLDAGTIKDFKE--NHTDVK-VLFTITMEQKALSDVTKAPGGIVKK 666

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++  S  S  ++++    G+  +      I+  F   R E   RR K +L K +D+  +L
Sbjct: 667 FKLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQKLQDQIKLL 726


>gi|121883|sp|P21557|GYRA_HALSQ RecName: Full=DNA gyrase subunit A
 gi|149025|gb|AAB09606.1| DNA gyrase subunit A [Haloferax lucentense]
          Length = 82

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
          + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV
Sbjct: 19 VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGV 68


>gi|308743037|gb|ADO39961.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 41/46 (89%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV
Sbjct: 2   ARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 142/325 (43%), Gaps = 52/325 (16%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DG KP  R+IL+G  +  +   +  +K ++++G +     YH HG+ ++  ++
Sbjct: 755  RSIPSMLDGFKPSQRKILYGCYKRNL---RSEIKVSQLAGYIGEHSAYH-HGDQSLIQSI 810

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT----- 150
              +AQD+  S  L L++  G FGS         R    +   AA ++  DL K T     
Sbjct: 811  IGLAQDFVGSNNLNLLQPIGGFGS---------RAQGGKDASAARYIFTDLSKITRKIFH 861

Query: 151  VDFRP--NY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
            VD  P  NY   D    EP       P +L+NG  GI  G +TNIP  N  ++V     +
Sbjct: 862  VDDNPLLNYLQDDEQTVEPEWYLPIVPMLLINGSEGIGTGWSTNIPPFNPVDIVANIRRL 921

Query: 206  IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
            +D    +++ ++   RG                N   T   +   R   +IE+   D E 
Sbjct: 922  MDGQ--EMEEMIPWYRG---------------WNGSITKISADKFRMEGNIEQI--DDET 962

Query: 266  IVVTEIP---YQVN-KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            I +TEIP   + +N K  +L  IA    EK+   I D+ ++       V+   K      
Sbjct: 963  IEITEIPAKTWTINMKEFLLNGIAG--SEKQKSWIKDMEEQHGMDLKFVITLTKEEMKKS 1020

Query: 322  VILNQLYRYTSLQSLFSVNMVALNG 346
            + +    R+  + ++   NMVA + 
Sbjct: 1021 LQMGLKERFKLITTINVGNMVAFDA 1045


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 44/281 (15%)

Query: 19  VSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           +SI+D +    + +++  N+   R+IP L DGLKP  R+++F   +  +   +  +K A+
Sbjct: 643 ISISDFVNKELILFSMADNI---RSIPSLVDGLKPGQRKVMFSCFKRNL---RSEIKVAQ 696

Query: 77  ISGEV--MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAE 128
           + G V     YH HG  ++   +  +AQD+    ++ LLL  GQ  FGS    G   A+ 
Sbjct: 697 LVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQ--FGSRLQGGKDAASP 753

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY    L      + ++   D +    N D    EP       P VLVNG  GI  G +T
Sbjct: 754 RYIFTSLSPLTRLIFNE-NDDAILSYLNDDNLSIEPEFYVPIIPMVLVNGAEGIGTGWST 812

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP  N  +VV+               +  +IRG D P   +   R         G G  
Sbjct: 813 SIPNFNPVDVVEN--------------IRRLIRGED-PVEMIPYYRNFRGTIEKVGEGKY 857

Query: 249 VIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAE 286
            + G+       GD + + ++E+P   + +N    LE + +
Sbjct: 858 QVSGIYE-----GDMD-LEISELPVGTWTLNYKEFLESLVQ 892


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +       K  K ++ SG V     YH HG  ++  
Sbjct: 694 LQRSIPSMVDGLKPGQRKILFCSFKRNFV---KEAKVSQFSGYVSEHSAYH-HGEQSLAG 749

Query: 96  ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQD+  S  + L++  G FG  SV G   A+ RY   +L     FL        +
Sbjct: 750 TIIGMAQDFVGSNNINLLQPNGQFGTRSVGGKDHASARYIYTQLSPITRFLFPKDDDGLL 809

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           D+  + DG   EP       P VLVNG  GI  G +T IP +N  +VV
Sbjct: 810 DYL-DEDGQTIEPTWYMPIIPTVLVNGCEGIGTGWSTFIPNYNPRDVV 856


>gi|221124382|ref|XP_002163411.1| PREDICTED: similar to phosphoserine aminotransferase [Hydra
           magnipapillata]
          Length = 495

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 55/213 (25%)

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +R
Sbjct: 2   GTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVR 61

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GVRG+ L +G  VI+M                         L++ D      
Sbjct: 62  PM-GRNARGVRGMMLDEGQSVIAM-------------------------LVAED------ 89

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                ++Q +LT +E G+GKRT+  ++    R  KG+ A   S+
Sbjct: 90  ---------------------EQQSVLTATENGYGKRTNITEYTRHGRGTKGMIAIQQSE 128

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
            N  G +VA   V+  D+I+L++DKG L   P 
Sbjct: 129 RN--GKVVAATLVHAEDEIMLITDKGVLSAGPA 159


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 167/413 (40%), Gaps = 47/413 (11%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640  VKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696  QLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755  YIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            +P  N  ++ +               +   + G DF          G K       G+ +
Sbjct: 814  VPPFNPKDIKEN--------------IQRSLEGHDFKEMKPWF--RGFKGKVFKEDGTWI 857

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
              GV    + +G R  + VTE+P         E +  LV +K I    +     D     
Sbjct: 858  TEGVW---RDTGSR--LKVTELPPGRWTQDYKEYLDTLVEKKVISGFTNNSTTED----- 907

Query: 310  VVIELKRGASADVILNQLYR---YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
            V  E+      DV+ +   R   +TS   LF           PE      ILK FV  R 
Sbjct: 908  VDFEIMGYTGKDVLKDLKMRKSFHTSNMHLFHPTKGIYKYSSPEE-----ILKDFVDLRL 962

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +   +R ++L+   + +A  + G       +     I+ F    +   R+L Q
Sbjct: 963  DHYKKRKEHLIKVLQTKA-TMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQ 1014


>gi|224533041|ref|ZP_03673647.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512035|gb|EEF82430.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 114

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 8/96 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + G  M K
Sbjct: 7   LKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVVGNTM-K 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           YHPHG+ +IY+AL  +A     + L IE QGNFG++
Sbjct: 63  YHPHGDTSIYEALVNIAN----KDLFIEKQGNFGNL 94


>gi|71842510|gb|AAZ43362.1| GyrA [Escherichia coli]
          Length = 52

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 40/50 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVD 52


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 1221

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 130/289 (44%), Gaps = 33/289 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++TD +    + +A+ V   RA+    DGLKP  R+I++ +M+       +  K A++S
Sbjct: 659 LTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWALMRRS---GNEAAKVAQLS 714

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERY 130
           G +     +H HG  ++ + + +MAQ ++    + LL+ EGQ  FGS    G+  AA RY
Sbjct: 715 GYISEASAFH-HGETSLQETMIKMAQSFTGGNNVNLLVPEGQ--FGSRQQLGNDHAAPRY 771

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
              +L K A  L        +D+    +G   EP       P +L NG  GI  G A+NI
Sbjct: 772 IFTKLSKVARLLFPSEDDPLLDYIVE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNI 830

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG-RGSIV 249
           P  +  +V     A+I       +A   ++R        ++    G +     G  G  +
Sbjct: 831 PPFHPLDVSAAVRAMISG-----EAAKSVVR-------RLVPWAVGFQGEIRRGPEGEFI 878

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             G     K  G R  + VTE+P+  +  A  E I+ L  +  +  IAD
Sbjct: 879 AVGTYTYCK--GGR--VHVTELPWTCSVEAFREHISYLATKDIVNRIAD 923


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 130/289 (44%), Gaps = 33/289 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++TD +    + +A+ V   RA+    DGLKP  R+I++ +M+       +  K A++S
Sbjct: 659 LTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWALMRRS---GNEAAKVAQLS 714

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERY 130
           G +     +H HG  ++ + + +MAQ ++    + LL+ EGQ  FGS    G+  AA RY
Sbjct: 715 GYISEASAFH-HGETSLQETMIKMAQSFTGGNNVNLLVPEGQ--FGSRQQLGNDHAAPRY 771

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
              +L K A  L        +D+    +G   EP       P +L NG  GI  G A+NI
Sbjct: 772 IFTKLSKVARLLFPSEDDPLLDYIVE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNI 830

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG-RGSIV 249
           P  +  +V     A+I       +A   ++R        ++    G +     G  G  +
Sbjct: 831 PPFHPLDVSAAVRAMISG-----EAAKSVVR-------RLVPWAVGFQGEIRRGPEGEFI 878

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             G     K  G R  + VTE+P+  +  A  E I+ L  +  +  IAD
Sbjct: 879 AVGTYTYCK--GGR--VHVTELPWTCSVEAFREHISYLATKDIVNRIAD 923


>gi|33322733|gb|AAQ07101.1|AF496413_1 topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 122

 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 62/101 (61%)

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV +RT++ L
Sbjct: 2   ADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVTKRTQFDL 61

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+
Sbjct: 62  KKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLV 102


>gi|326804513|ref|YP_004327384.1| hypothetical protein Vi01_013 [Salmonella phage Vi01]
 gi|301795163|emb|CBW37881.1| Topoisomerase IIM [Salmonella phage Vi01]
          Length = 467

 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 168/401 (41%), Gaps = 69/401 (17%)

Query: 18  SVSITDEMQNSYLTYAI-NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           S+++TD + N +  +++ N I  R IP L D LKP  R+ILF  ++ G E   + V    
Sbjct: 29  SINVTDYVNNDHKAFSVFNSI--RQIPQLIDSLKPSQRKILFTALEYGKE---EIVDRLG 83

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +       Y   G   + + +  MAQ +  +  +   +  G FGS+ G   ++ RY    
Sbjct: 84  MFAAARTNYK-SGGENMGNTIVNMAQAFPGTNNIPYFDRDGQFGSIMGRDASSARYISVS 142

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +      +     +  +D+  NY G  Q EP       P  LVNG  GI  G +T+ P H
Sbjct: 143 VSDVIRKIFRKEDEGILDY--NYLGEEQLEPKFFLPVIPMFLVNGINGIGSGYSTDTPCH 200

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPD----FPTGAVILGRTGIKNAYATGRGSIV 249
                   CV  +      L AL  ++RG D     P      G TG      T  G   
Sbjct: 201 --------CVKSV------LSALRALLRGEDPTDLKPYWNGYKGETGY-----TEEGRAY 241

Query: 250 IRGV-SHIEKTSGDREQIVVTEIPY-QVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            RG+   I  T+     + +TE+P     K+   + +  L +   + + A   +++   G
Sbjct: 242 SRGIFKRINATT-----LHITEVPIGWFAKSYETKVLLPLYKAGLLTEYA---NDTTEDG 293

Query: 308 YRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + + +  KRG  +   D  + Q+++      L+S N      +  +     G+++ +  +
Sbjct: 294 WDITVVFKRGELSKLDDAQIEQMFK------LYSANKPVWTAWDED-----GVIRRYSGW 342

Query: 365 REEV-------VVR---RTKYLLNKARDRAHVLVGLAIAVA 395
           +E +       ++R   R +YLL +  D+ H L   A+ ++
Sbjct: 343 KEMLLSFFNYRLIRYEDRRQYLLKEMTDKIHRLNNRALFIS 383


>gi|3152658|gb|AAC17107.1| topoisomerase IV subunit A [Citrobacter freundii]
          Length = 69

 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 46/62 (74%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VD 121
            D
Sbjct: 61  PD 62


>gi|308743033|gb|ADO39959.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 72.0 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 40/46 (86%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 2   ARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS---GEV--MGKYHPHGNAA 92
           L R+IP + DGLKP  R+ILF        + + +VK A+IS   G V     YH HG  +
Sbjct: 691 LQRSIPSMVDGLKPGQRKILF------CSFKRNFVKEAKISQFSGYVSEHSAYH-HGEQS 743

Query: 93  IYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           +   +  MAQD+    ++ LLL  GQ    SV G   A+ RY   +L     FL      
Sbjct: 744 LASTIIGMAQDFVGSNNINLLLPNGQFGTRSVGGKDHASARYIYTQLSPITRFLFPKDDD 803

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +D+  + DG   EP       P VLVNG  GI  G +T IP +N  ++V
Sbjct: 804 GLLDYL-DEDGQTIEPNWYMPIIPMVLVNGCEGIGTGWSTFIPNYNPRDIV 853


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 158/374 (42%), Gaps = 38/374 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R++P++ DG KP  R++LF M      + +  V+ ++++G V     YH HG  ++ +
Sbjct: 199 LRRSLPNIVDGYKPSQRKVLFTMFG---RYERDEVRVSQLAGAVSQYCGYH-HGEESLVN 254

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            + R+AQD+  S  L L+   G FG+    G+  A+ RY    L   A  +        +
Sbjct: 255 TIIRLAQDFVGSNNLNLLLPLGQFGTRLAGGEDAASARYIYTSLSPLARIIFPRADDKVL 314

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +    + +F EP   C   P +L+NG  GI  G AT I      +++     +ID   +
Sbjct: 315 KYLME-ENTFIEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQIISNAQRLIDGRPL 373

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             D L      P F      +     +    +G+       +S+    SG R   ++TE+
Sbjct: 374 Q-DML------PHFRKFQGTINEITPRQYSISGK-------ISYHRLRSGLRA--IITEL 417

Query: 272 PYQVNKAAMLEKIAELVREKRIV------DIADLRDESDRQGYRVVIELKRGASADVILN 325
           P  +      EK+ + + +  ++         +L  ES+      VI+ K   S    + 
Sbjct: 418 PTGIWNNKYKEKVLDSIMKSGLISYFICSSYEELHSESNVHFILHVID-KPLISDKKQIK 476

Query: 326 QLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            L R   L+S+ S N + L   K    +  + + I + F   R +  V R +Y L KA D
Sbjct: 477 TLNRLLKLRSVASENSMILFDEKNVLRKYNSTVDIFQEFFEVRRQKYVERREYEL-KAMD 535

Query: 383 RAHVLVGLAIAVAN 396
           +    +G  +   N
Sbjct: 536 KKLKFIGNQVRFVN 549


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 168/406 (41%), Gaps = 51/406 (12%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R++P + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 682  LARSVPSMVDGLKPGQRKILFAAFKRNF---TSQAKVAQFSGYVSEHSAYH-HGEQSLAS 737

Query: 96   ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  + ++   G FG  S  G   A+ RY    L      +        +
Sbjct: 738  TIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTSLTPLTRTIFPKPDDILL 797

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +F    DG   EP       P VLVNG  GI  G +T +P +N  ++V     ++ +  +
Sbjct: 798  NFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRDEQL 856

Query: 212  D-LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VSHIEKTSGDREQIVVT 269
            + +D   +  +G            T +K+A      S  + G V  + +T+     I V 
Sbjct: 857  EPMDPWYKGFKG------------TIVKSATKESGVSYTVTGIVEQVNETT-----IRVL 899

Query: 270  EIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI--- 323
            E+P   +  +    LE +     + +   I D R+ +        I L     A+ +   
Sbjct: 900  ELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFEISLSEEKMAEALAEG 959

Query: 324  LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT-------KYL 376
            L + ++ ++  S  ++N+   +G+  +  T   IL+ F   R E+ V+R        +Y 
Sbjct: 960  LTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLELYVKRKEVQVENLQYE 1019

Query: 377  LNKARDRAHVLVGLA---IAVANLDEVVRIIR-----FSPNPETAR 414
            L K  ++   ++G+    I V N      ++      F+P P+ A+
Sbjct: 1020 LLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKAK 1065


>gi|308743035|gb|ADO39960.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/46 (63%), Positives = 40/46 (86%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 2   ARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
            98AG31]
          Length = 1259

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 148/349 (42%), Gaps = 35/349 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  +   K  +K A++ G       YH HG  ++   +
Sbjct: 794  RSIPSMVDGFKPGQRKVLFACFKRKL---KAEIKVAQLGGYCAEHSAYH-HGEQSLTQTI 849

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + ++   G FG+    G   A+ RY    ++K    +        +++
Sbjct: 850  VALAQNFVGSNNINVLSPNGQFGTRANGGKDAASARYIFTNIEKITRAIFPPQDDHVLNY 909

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              N DG+  EP       P VLVNG  GI  G +++IP +N  ++V+     + +  ++ 
Sbjct: 910  L-NDDGAQIEPEWYVPVLPMVLVNGSSGIGTGWSSDIPNYNPMDIVENLRRKLSDEPLE- 967

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P +P      G TG     A G+  +        E    D + + +TE+P 
Sbjct: 968  ---------PIYP---WFRGFTGHITPEAPGKFKVT------GEWNQPDEDTVEITELPI 1009

Query: 274  QVNKAAMLEKIAELVREKRIVD--IADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +V      E +   +     V   + D R+         +I+L       +  + L +  
Sbjct: 1010 RVWNLTYKELLEAWITSTDKVPALVKDYREYHTETTVHFIIQLTDKGKEAIKKDGLEKVF 1069

Query: 332  SLQ-SLFSVNMVALNGY-KPERF-TLIGILKAFVAFREEVVVRRTKYLL 377
             L  ++ + NMV  + + K +++ T   IL+ F   R E   +R ++L+
Sbjct: 1070 KLTGNVSTTNMVCFDSFGKIKKYSTPEEILEDFYDIRLEYYQKRKEFLV 1118


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 17/180 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++L+      V    K  K  R++G+V  +  YH HG  ++   +
Sbjct: 667 RSIPSVYDGLKPSQRKVLYACFASNVIGPSKTEKVERLAGKVASIAGYH-HGEVSLSGTI 725

Query: 98  ARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLL----DDLGK 148
             MAQ++      + L+   G++G+    G   +A RY           L     DDL +
Sbjct: 726 VGMAQNFVGSGNNIPLLYPDGSYGTRLRGGKDHSAARYLSTYALPLTRILFPAEDDDLYE 785

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
             ++     D    EPV      P +LVNG  GI  G +T IP+HN  ++ +     +DN
Sbjct: 786 RVLE-----DNELNEPVNYLPILPMILVNGACGIGTGHSTEIPSHNPLDICEWIRCWLDN 840


>gi|4545083|gb|AAD22385.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 45

 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 45


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++   +  +       K +R++G V  +  YH HG  ++   +
Sbjct: 743 RSIPSVVDGLKPGQRKVVYYCFKRNLVHE---TKVSRLAGYVASETAYH-HGEVSMEQTI 798

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++    ++ LL+  GQ    S  G   +A RY    L   A  L +      +++
Sbjct: 799 VNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNTALSPLARVLFNSNDDQLLNY 858

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           + N +G + EP       P VLVNG  GI  G +T IP +N  ++ 
Sbjct: 859 Q-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDIT 903


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 167/413 (40%), Gaps = 47/413 (11%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640  VKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696  QLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755  YIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            +P  N  ++ +               +   + G DF          G K       G+ +
Sbjct: 814  VPPFNPKDIKEN--------------IQRSLEGHDFKEMKPWF--RGFKGKVFKEDGTWI 857

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
              GV    + +G R  + VTE+P         E +  L+ +K I    +     D     
Sbjct: 858  TEGVW---RDTGSR--LKVTELPPGRWTQDYKEYLDTLMEKKVISGFTNNSTTED----- 907

Query: 310  VVIELKRGASADVILNQLYR---YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
            V  E+      DV+ +   R   +TS   LF           PE      ILK FV  R 
Sbjct: 908  VDFEIMGYTGKDVLKDLKMRKSFHTSNMHLFHPTKGIYKYSSPEE-----ILKDFVDLRL 962

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +   +R ++L+   + +A  + G       +     I+ F    +   R+L Q
Sbjct: 963  DHYKKRKEHLIKVLQTKA-TMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQ 1014


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++   +  +       K +R++G V  +  YH HG  ++   +
Sbjct: 689 RSIPSVVDGLKPGQRKVVYYCFKRNLVHE---TKVSRLAGYVASETAYH-HGEVSMEQTI 744

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++    ++ LL+  GQ    S  G   +A RY    L   A  L +      +++
Sbjct: 745 VNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNTALSPLARVLFNSNDDQLLNY 804

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           + N +G + EP       P VLVNG  GI  G +T IP +N  ++ 
Sbjct: 805 Q-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNYNPKDIT 849


>gi|18481444|gb|AAL73447.1|AF435418_1 DNA topoisomerase IV subunit C [Aeromonas caviae]
 gi|18481448|gb|AAL73449.1|AF435420_1 DNA topoisomerase IV subunit C [Aeromonas sobria]
 gi|298104542|gb|ADI55011.1| DNA topoisomerase IV subunit C [Aeromonas caviae]
          Length = 68

 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDPPA 126
           + D DP +
Sbjct: 61  APD-DPKS 67


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 30/243 (12%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +  +    K +K  ++ G V     YH HG  ++  
Sbjct: 409 LQRSIPSMVDGLKPAQRKILFSCFKRNL---VKDLKVVQLQGYVSEQSAYH-HGEQSLQS 464

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQ++  S  + L+  +G FG+    G   A+ RY    L     FL        +
Sbjct: 465 TIVGMAQNFVGSNNINLLAPKGQFGTRCSGGKDHASPRYIYTCLSPITRFLFPKDDDCLL 524

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+    DG   EP       P VLVNG  GI  G +T IP +N  ++V      ++   +
Sbjct: 525 DYL-QEDGLSIEPTWYAPIIPLVLVNGCEGIGTGWSTFIPNYNPRDIVANLRRFLNGEKM 583

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGI--KNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +             P      G  G   K+A   G GS  + G+  IE+   +   + +T
Sbjct: 584 E-------------PMHPWYKGFKGTIEKSASKEGGGSYAVNGI--IEEV--NETTVRIT 626

Query: 270 EIP 272
           E+P
Sbjct: 627 ELP 629


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
          Length = 1178

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 156/354 (44%), Gaps = 48/354 (13%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R++P++ DGLKP  R++LF M      + +  ++ ++++G V     YH HG  ++ +
Sbjct: 734  LRRSLPNVVDGLKPSQRKVLFTMFG---RYERGEIRVSQLAGAVSQYCGYH-HGEESLVN 789

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLL----DDLG 147
             + R+AQD+  S  L L+   G FG+    G+  A+ RY    L   A  +     D + 
Sbjct: 790  TIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVASARYIYTSLSPLARAIFPHPDDKVL 849

Query: 148  KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
            K+ V+     + +  EP   C   P +L+NG  GI  G AT I      +V+     +ID
Sbjct: 850  KNLVE-----ENALVEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQVISNAQRLID 904

Query: 208  NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
               +  D L      P F      +  T  +    +G+       VS+    SG R   +
Sbjct: 905  GRPLQ-DML------PHFRKFQGTIYETAPRQYSISGK-------VSYRRLKSGLRA--I 948

Query: 268  VTEIPYQVNKAAMLEKIAE-LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            +TE+P  +      EK+ +  ++   I +  +L  ES+      VI+ K   S    +  
Sbjct: 949  ITELPTGIWNNKYKEKVLDSAIKNGIISNYEELHTESNVHFILHVID-KPLLSDKKQIKA 1007

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYL 376
            L R   L+S+ S N + L       F    +L+ + +    F+E   VRR KY+
Sbjct: 1008 LNRLLKLRSVASENSMIL-------FDEKNVLQKYDSTREIFQEFFEVRRQKYI 1054


>gi|71842508|gb|AAZ43361.1| GyrA [Escherichia coli]
          Length = 52

 Score = 70.9 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 40/50 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVD 52


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 11/167 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R+++F   +  +   K  +K  ++ G V     YH HG+ A+   +
Sbjct: 671 RSIPSVVDGLKPGQRKVIFSCFKRKL---KTEIKVHQLQGYVSEHSAYH-HGDQALTMTI 726

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQD+    ++ LL+  GQ    S+ G   A+ RY    + +    +     +  +++
Sbjct: 727 VGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDAASARYIFTAVPRITRLMFHADDEPLLNY 786

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
             + DG   EP       P VL+NG  GI  G +T +P +N  EVVD
Sbjct: 787 LED-DGQSIEPEWYAPVVPQVLLNGAEGIGTGWSTFVPNYNPREVVD 832


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella
           virus 1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 166/377 (44%), Gaps = 51/377 (13%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
           L R+IP + DG KP  R++L+   +  +  +   VK A+ SG V     YH HG  ++  
Sbjct: 649 LERSIPSVVDGFKPSQRKVLYCAFKRNLTSD---VKVAQFSGYVAEHSAYH-HGEVSLQG 704

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
            +  +AQD+    ++  LL EGQ  FGS    G   A+ RY   +L      +  D   +
Sbjct: 705 TIVNLAQDYVGSNNINWLLPEGQ--FGSRLQGGKDHASARYIFTKLNPKTRQVFVDTDDN 762

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
            + +  + DG   EP       P++LVNG  GI  G +TNIP++N  ++VD    +I   
Sbjct: 763 LLKYLYD-DGDKIEPECYVPIIPSILVNGSSGIGTGSSTNIPSYNPKDIVDNVKRLISGE 821

Query: 210 D-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           D +++    +  +G                    T  G  V +G+        + + IVV
Sbjct: 822 DLVEMKPWYKGFKG----------------KIMETSPGVYVTKGLY-----MPNGKTIVV 860

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           +E+P         E +  L+ +K I    +   ++D     V+ E+    + ++ + +L 
Sbjct: 861 SELPVGKWTHDYKEHLDGLLEKKIISYFREKHSDTD-----VLFEIDFVGNPNIDILKLE 915

Query: 329 RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
                 ++ S NM A +  G   +  T + I++ +   R+++ V+R  YLL     R ++
Sbjct: 916 -----TTIRSTNMHAFDPSGKIKKYDTPLDIIRDWFEVRKDLYVKRKAYLLEDLTHRTNI 970

Query: 387 LVGLA--IAVANLDEVV 401
                  I + N DE++
Sbjct: 971 AQNKHRFITMVNNDEII 987


>gi|262190159|ref|ZP_06048441.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
 gi|262033950|gb|EEY52408.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
          Length = 381

 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 159/368 (43%), Gaps = 54/368 (14%)

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL IA  NLDEV+ IIR   +P+     LM R           DL D           
Sbjct: 1   MQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR----------FDLTD----------- 36

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
                +Q  AIL+ +L  L  L    IR E + L  E K+  ++L S  RL  ++K+E+ 
Sbjct: 37  -----IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIK 91

Query: 507 SVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +  D+    RR+ +V  E    + + D +  E + V +S  G+++         Q    K
Sbjct: 92  ADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYK 151

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                    ++++T     S   +V F  S G  Y  +   LP  S + +G+ +   L++
Sbjct: 152 A-------GDNYLTHACGKSNQQAV-FLGSDGRSYSLESHTLP--SARGQGEPITGRLNV 201

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
            +G  I  ++   ED+     L++V +   +G V   K  D +  NRSGK  + L    E
Sbjct: 202 AEGTTIRQVVMGEEDQ-----LWLVGSDAGYGFV--CKGDDLLSKNRSGKALINLPENSE 254

Query: 684 ILSVETCTQ-END-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG---DQVISM 738
           +++ +     +ND IL  T  G+ + FPI  +   +      +  I  AK    ++V+S 
Sbjct: 255 VMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSN 314

Query: 739 AIVLHADA 746
            +VL   A
Sbjct: 315 LMVLPQGA 322


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DG KP  R++L+G+ +  +    K  +     GE  G YH HG A++   +  
Sbjct: 738 RSIPSVMDGFKPTQRKVLYGVYKRNLTSEIKVAQLVGYIGEHSG-YH-HGEASLTQTIIS 795

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQD+  S  L +++  G FGS    G   +A RY    +      + + L    +++  
Sbjct: 796 LAQDFVGSNNLNILKPNGGFGSRASGGKDASAARYIFTEVTPITRKVYNTLDNPLLNYLQ 855

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           + D    EP       P +LVNG  GI  G +T IP  N  ++V    A+++
Sbjct: 856 D-DEQTVEPQWYVPVLPMILVNGSEGIGSGWSTQIPPFNPVDIVKNIRALMN 906


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
           purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
           purpuratus]
          Length = 1448

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV- 81
           +E  N  L    N    R+IP + DGLKP  R++LF   +   ++ KK +K A+++G V 
Sbjct: 722 NEFINKELVLFSNADNERSIPSMVDGLKPGQRKVLFTCFK---KYEKKEIKVAQMAGAVS 778

Query: 82  -MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQ 136
            +  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ RY   +L 
Sbjct: 779 ELSAYH-HGEQSLMSTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAASARYIFTQLS 837

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             A  +        + +   YD + + EP       P VL+NG  GI  G +T I  +++
Sbjct: 838 PLARLVFPHHDDPLLSYM--YDDNQRIEPEFYAPIIPMVLINGSEGIGTGWSTRICNYDI 895

Query: 196 GEVV 199
            EVV
Sbjct: 896 REVV 899


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 175/420 (41%), Gaps = 55/420 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF  ++  +    + +K A+++G V  +  YH HG  ++   +
Sbjct: 716  RSIPSVVDGLKPGQRKVLFTCLKRNL---IREIKVAQLAGSVAELSAYH-HGEQSLMSTI 771

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAH--FLLDDLGKDTV 151
              +AQ++  S  L L++  G FG+    G   A+ RY    L       F L+D      
Sbjct: 772  IGLAQNFVGSNNLNLLQPIGQFGTRLSGGKDAASPRYIFTALNSLTRLIFHLED------ 825

Query: 152  DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            D   NY   D    EP       P VLVNG  GI  G AT+I  +N+ E+++    ++D 
Sbjct: 826  DPLLNYLYDDNQRIEPEWYAPIIPMVLVNGADGIGTGYATHILNYNVIEIINNLYRMLDG 885

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
             +     ++   RG  F      LG                 R V + E    D + + +
Sbjct: 886  EEP--HRMLPNFRG--FTGTIEDLGSN---------------RYVCYGEVAVLDDDTLEI 926

Query: 269  TEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
            TE+P +V      E + E +    EK    I D ++       R VI++      +    
Sbjct: 927  TELPIRVWTQNYKESVLEPMLNGSEKVPACITDYKEYHTDVTVRFVIKMSPEKLREAEST 986

Query: 326  QLYRYTSLQSLFSV-NMV------ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             L+++  LQ++ S  +MV       L  Y  E    I I++ F   R     +R  YL  
Sbjct: 987  GLHKFFKLQTVMSTGSMVCFDPLGCLKCYPNE----IIIIREFYELRLTWYEKRKVYLEG 1042

Query: 379  KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
                 A  L   A  V    + + +I   P  E  R  L + ++++  +K   + ID ++
Sbjct: 1043 VLSAEARKLENQARFVLEKIQSIMVIENKPKKELIRM-LKEANYDSDPVKAWKESIDKAA 1101


>gi|32453410|gb|AAP58317.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453420|gb|AAP59413.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp.
           aureus]
          Length = 55

 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           HG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   HGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 55


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 30/268 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+ +M+       +  K A++SG +  +  +H HG  ++ + 
Sbjct: 678 ARALAHAVDGLKPSQRKILWAIMRRS---GNESAKVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L   A  L     +  
Sbjct: 734 IIKMAQNFTGGNNINLLIPEGQ--FGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPL 791

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I+   
Sbjct: 792 LDYVTE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMING-- 848

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              +A   ++R        ++    G +     G     I   S+     G   ++ VTE
Sbjct: 849 ---EAAKVVVR-------RLVPWAVGYQGEVRRGPEGEFIAAGSYQYYVDG---RVHVTE 895

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIAD 298
           IP+ ++  A  + I+ L  +  +  IAD
Sbjct: 896 IPWTLSIEAFRDHISVLASKDVVQRIAD 923


>gi|18481446|gb|AAL73448.1|AF435419_1 DNA topoisomerase IV subunit C [Aeromonas hydrophila]
          Length = 68

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDPPA 126
           + D DP +
Sbjct: 61  APD-DPKS 67


>gi|224539990|ref|ZP_03680529.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518395|gb|EEF87500.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 42/50 (84%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
          E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM
Sbjct: 3  EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMM 52


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 30/268 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+ +M+       +  K A++SG +  +  +H HG  ++ + 
Sbjct: 678 ARALAHAVDGLKPSQRKILWAIMRRS---GNESAKVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L   A  L     +  
Sbjct: 734 IIKMAQNFTGGNNINLLIPEGQ--FGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPL 791

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I+   
Sbjct: 792 LDYVTE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMING-- 848

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              +A   ++R        ++    G +     G     I   S+     G   ++ VTE
Sbjct: 849 ---EAAKVVVR-------RLVPWAVGYQGEVRRGPEGEFIAAGSYQYYVDG---RVHVTE 895

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIAD 298
           IP+ ++  A  + I+ L  +  +  IAD
Sbjct: 896 IPWTLSIEAFRDHISVLASKDVVQRIAD 923


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 30/268 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+ +M+       +  K A++SG +  +  +H HG  ++ + 
Sbjct: 678 ARALAHAVDGLKPSQRKILWAIMRRS---GNESAKVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L   A  L     +  
Sbjct: 734 IIKMAQNFTGGNNINLLIPEGQ--FGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPL 791

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I+   
Sbjct: 792 LDYVTE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMING-- 848

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              +A   ++R        ++    G +     G     I   S+     G   ++ VTE
Sbjct: 849 ---EAAKVVVR-------RLVPWAVGYQGEVRRGPEGEFIAAGSYQYYVDG---RVHVTE 895

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIAD 298
           IP+ ++  A  + I+ L  +  +  IAD
Sbjct: 896 IPWTLSIEAFRDHISVLASKDVVQRIAD 923


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640 VKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76  RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696 QLAAYVADKSAYH-HGEVSLADTIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755 YIFTKLTKEARKIFDPRDDPILNYLDD-DGRSIEPDFYMPTIPMVLVNGTEGIGTGFSCY 813

Query: 190 IPTHNLGEV 198
           +P  N  ++
Sbjct: 814 VPPFNPKDI 822


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
           Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 30/268 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+ +M+       +  K A++SG +  +  +H HG  ++ + 
Sbjct: 678 ARALAHAVDGLKPSQRKILWAIMRRS---GNESAKVAQMSGYISEVSAFH-HGEMSLQET 733

Query: 97  LARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY   +L   A  L     +  
Sbjct: 734 IIKMAQNFTGGNNINLLIPEGQ--FGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPL 791

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D+    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I+   
Sbjct: 792 LDYVTE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMING-- 848

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              +A   ++R        ++    G +     G     I   S+     G   ++ VTE
Sbjct: 849 ---EAAKVVVR-------RLVPWAVGYQGEVRRGPEGEFIAAGSYQYYVDG---RVHVTE 895

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIAD 298
           IP+ ++  A  + I+ L  +  +  IAD
Sbjct: 896 IPWTLSIEAFRDHISVLASKDVVQRIAD 923


>gi|186659434|dbj|BAG30948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 54

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y +  RMAQ +SLRL
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRL 52


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 23/240 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           RAIP   DG KP  R+IL+  ++  +   K  +K A++SG+V     YH HG A++ + +
Sbjct: 690 RAIPSSIDGWKPGQRKILWVCLKNNI---KNDLKVAQLSGKVSEQAAYH-HGEASLNETI 745

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             M QD+  S  + + +  G  G+    G+   + RY    L+K    +      D + +
Sbjct: 746 IGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVYTALEKITRTIFMKEDDDLLTY 805

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI-DNPDID 212
             + +G   EPV      P VLVNG  GI VG ++ +P +   +++D     + D P ++
Sbjct: 806 NTD-EGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYCPQDIIDNLRRKMNDEPMVE 864

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +        G   P   +   + G+K          +++ +        D   I +TE+P
Sbjct: 865 MTPWYSGFTGKIIPIQVI---KDGVKQPIVKWESRGIVKKI--------DDTTIEITELP 913


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALA 98
           R+IP + DGLKP  R+ILF   +  +    K +K + +SG V     + HG +++   + 
Sbjct: 698 RSIPSVVDGLKPGQRKILFACFKRKLT---KQLKVSELSGFVSECTAYQHGESSLQVTIT 754

Query: 99  RMAQDW--SLRLLLIEGQGNFGS-VDGDPPAAE-RYTECRLQKAAHFLLDDLGKDTVDFR 154
            MAQ +  S  + L+E +G+FG+ +DG   AA  RY    L   A  L        + + 
Sbjct: 755 GMAQTFVGSNNVNLLEPEGSFGTRLDGGKDAASPRYIYTLLSPFARKLFPATDDPLLTYN 814

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            + D    EP+      P VL+NG  GI  G +T IP +N  +VV     +++N +++
Sbjct: 815 LDDDKKI-EPMWYAPVVPLVLINGADGIGTGWSTTIPNYNPEDVVANIRRLMNNEELE 871


>gi|258611538|ref|ZP_05711544.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
 gi|258601051|gb|EEW14376.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
          Length = 334

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 21/225 (9%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
           + ++ E  +  ED++V+V+  GYVKR     Y A        + + M++ D    +  ++
Sbjct: 8   IKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS-----NGAELAMKEADHAIFIQKMN 62

Query: 585 THTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITT---IMPFPED 639
           +  S+L F+S G F+Y+  V  LP    +  G  + ++ S L+ GE I +   I  F E+
Sbjct: 63  SLDSLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEE 121

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDIL 697
           +        +F TK+G  +++ ++++ +  R  K  +A+KL   DE+LSV       DI 
Sbjct: 122 KR------FLFVTKNGMTKQSAITNY-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIF 174

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           L TK G  +R+ I+ I   +G  + GV+ I+L + D VI   +++
Sbjct: 175 LATKNGYGLRYSITEIPE-SGARTAGVKAINLKQDDIVIGGIVLM 218


>gi|228478510|gb|ACQ41841.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 38/43 (88%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+AA+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDAAVYDRIVRMAQDFSLRYMLIDGQG 44


>gi|530409|emb|CAA83715.1| DNA gyrase (A) [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 200

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 56/224 (25%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R K+S+F  INR+GK A+ L   D+++SV   T ++ I +  + G+ +R   S +   
Sbjct: 2   IKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNP- 60

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R   GVR + L   D V+                                        
Sbjct: 61  QSRVGSGVRALKLETNDVVV---------------------------------------- 80

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                 G IS         K   I TVS KG  K+T   D+RIS R+GKGI+  ++++  
Sbjct: 81  ------GAISS-------FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ-- 125

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
             G   A+    + D I+++S  G LI+  V+ I   SR   GV
Sbjct: 126 RTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGV 169


>gi|228478508|gb|ACQ41840.1| gyrase subunit A [Burkholderia multivorans]
 gi|228478512|gb|ACQ41842.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 38/43 (88%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 12/193 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK   +V+  D   N  L    N+   R+I  + DGLKP  R++LF  ++     +K+ +
Sbjct: 677 EKNTRTVTYKD-FVNKELVLFSNMDNERSIASVVDGLKPGSRKVLFTCIKRN---DKREI 732

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
           K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 733 KVAQLAGSVAEHSAYH-HGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRLQGGKDAA 791

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           + RY    L      +        + +  + D    EPV      P VLVNG  GI  G 
Sbjct: 792 SPRYIFTMLSPLTRLIFHPHDDPLLTYLRD-DNQKIEPVWYMPIIPMVLVNGAEGIGTGW 850

Query: 187 ATNIPTHNLGEVV 199
            T IP HN  EV+
Sbjct: 851 MTKIPNHNPREVI 863


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 126/287 (43%), Gaps = 40/287 (13%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALA 98
           R+IP++ DGLKP  R+ LF    +  +W K   K + ++   + +  + HG  ++   + 
Sbjct: 638 RSIPEMIDGLKPGQRKTLF--CSLARDW-KTECKVSVLTAHAIDRSDYNHGEQSLASTII 694

Query: 99  RMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +MAQD+    ++ LLL  GQ  FGS    G   A+ RY    +  A   L     KD   
Sbjct: 695 KMAQDYVGSSNVNLLLPMGQ--FGSQIFGGQDAASARYLYTMISPATRALFH---KDDDV 749

Query: 153 FRPNYDGSFQ---EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
                DG  Q   EP       P VLVNG  GI  G +T +P ++  +V+   + ++   
Sbjct: 750 LLAWMDGDNQRMIEPKWYIPIIPTVLVNGCEGIGTGWSTFVPKYSTKDVIKNIMRLMSG- 808

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
               +AL  ++  P +          G K       G  + +GV   EK   +   I +T
Sbjct: 809 ----EALEPMV--PSY---------RGFKGTITETEGGFITKGV--FEKNIQN-STIRIT 850

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+P  +   +  +K   +++ +    I ++RD S R    +++ L R
Sbjct: 851 ELP--IKHLSNYKKFLHVLKTEEKF-IKEIRDNSSRSSIDILLTLSR 894


>gi|297464681|ref|XP_002703368.1| PREDICTED: DNA topoisomerase II, beta isozyme, partial [Bos taurus]
          Length = 873

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 155/372 (41%), Gaps = 54/372 (14%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW-- 104
            KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +  +AQ++  
Sbjct: 1   FKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVG 56

Query: 105 SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F   YD + +
Sbjct: 57  SNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFL--YDDNQR 114

Query: 163 -EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
            EP       P VL+NG  GI  G A  +P ++  E+V+    ++D   +D   ++    
Sbjct: 115 VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDG--LDPHPML---- 168

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP----YQVNK 277
            P++      +   G +N YA      V+           DR  + +TE+P     QV K
Sbjct: 169 -PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELPVRTWTQVYK 215

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
             +LE +     +K    I+D ++       + V+++     A      L++   LQ+  
Sbjct: 216 EQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTL 274

Query: 338 SVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAHVLVG-LAI 392
           + N + L       F  +G LK +       +E   +R + Y L     R   LVG L  
Sbjct: 275 TCNSMVL-------FDHMGCLKKYETVQDILKEFFDLRLSYYGL-----RKEWLVGMLGA 322

Query: 393 AVANLDEVVRII 404
               L+   R I
Sbjct: 323 ESTKLNNQARFI 334


>gi|155676194|gb|ABU25360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD+  RMAQ +SL L
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSSVRMAQPFSLPL 51


>gi|228478516|gb|ACQ41844.1| gyrase subunit A [Burkholderia multivorans]
          Length = 43

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 37/43 (86%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQG
Sbjct: 1   ESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 43


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 27/196 (13%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DG KP  R++L+   +  +   KK    A    +    YH HG  A+   +  
Sbjct: 688 RSIPSVLDGFKPGQRKVLYTCFKKNLTTEKKVANLAPAVSDYTA-YH-HGEQALVQTIIG 745

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           MAQ++  +  +  ++  G FG+    G   AA RY    L K A  +          F P
Sbjct: 746 MAQNFVGTNNIYFLKPNGAFGTRATGGKDAAAARYIYTELNKIARKV----------FHP 795

Query: 156 NYDGSFQ---------EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
             D  F+         EP       P VL+NG  GI  G +T+IP  N  +VV+    ++
Sbjct: 796 ADDPLFRYVQEDEKTVEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLL 855

Query: 207 DNPDIDLDALMEIIRG 222
           +  D ++D +    RG
Sbjct: 856 N--DEEMDDMHPWFRG 869


>gi|228478506|gb|ACQ41839.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 37/43 (86%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++TD +    + +A+ V   RA+    DGLKP  R+I++ +M+       +  K A++S
Sbjct: 659 LTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWALMRRS---GNEAAKVAQLS 714

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERY 130
           G +     +H HG  ++ + + +MAQ ++    + LL+ EGQ  FGS    G+  AA RY
Sbjct: 715 GYISEASAFH-HGETSLQETMIKMAQSFTGGNNVNLLVPEGQ--FGSRQQLGNDHAAPRY 771

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
              +L K A  L        +D+    +G   EP       P +L NG  GI  G ++NI
Sbjct: 772 IFTKLSKVARLLFPSEDDPLLDYIVE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFSSNI 830

Query: 191 PTHNLGEVVDGCVAVI 206
           P  +  +V     A+I
Sbjct: 831 PPFHRLDVSAAVRAMI 846


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 32/192 (16%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI D +    + +A+     RAI    DGLKP  R+IL+ + + G     +  K A++S
Sbjct: 663 LSIPDFVHKEMVHFAL-AGNARAIAHSVDGLKPSQRKILWALFKRG---KAESAKVAQLS 718

Query: 79  GEV--MGKYHPHGNAAIYDALARMAQDWS----LRLLLIEGQGNFGSVD--GDPPAAERY 130
           G +  +  +H HG  ++ + + +MAQ+++    + LL+ EGQ  FGS    G+  AA RY
Sbjct: 719 GYISEVSSFH-HGEMSLQETIVKMAQNFTGGNNINLLVPEGQ--FGSRQQLGNDHAAPRY 775

Query: 131 TECRLQKAAHFLLDDLGKDTVDF--------RPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
              +L + A  L  +  +  +D+         PN+      P++     P +L NG  GI
Sbjct: 776 IFTKLSRFARVLFPEDDEPLLDYTEEEGTTTEPNH----YVPII-----PMLLCNGSVGI 826

Query: 183 AVGMATNIPTHN 194
             G A+NIP+++
Sbjct: 827 GFGFASNIPSYH 838


>gi|238592069|ref|XP_002392796.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
 gi|215459345|gb|EEB93726.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
          Length = 321

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 17/170 (10%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +      KK +K  ++ G V  K  YH HG  ++   +
Sbjct: 55  RSIPSVADGLKPGQRKVIWGCFKRNF---KKEIKVMQLVGYVSEKAVYH-HGEQSLMMTI 110

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +AQD+    ++ LL+  GQ  +G+ D  G   A+ RY        A  +      D V
Sbjct: 111 VNLAQDFVGSNNINLLMPNGQ--YGTRDQGGKDHASARYINTLPSLMARTIFHQ--DDDV 166

Query: 152 DFRPNYD-GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
              P  D     EP       P VL+NG  GI  G +TNIP +N  ++VD
Sbjct: 167 LLTPQKDENHIIEPEWYMPVLPMVLINGAEGIGTGWSTNIPCYNPRDIVD 216


>gi|28193545|emb|CAD56005.1| topoisomerase IV [Proteus mirabilis]
          Length = 64

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 43/57 (75%), Gaps = 1/57 (1%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP +
Sbjct: 4   KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKS 59


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1218

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 21/201 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T +S+ D +    + +++     R+IP   DG KP  R+ILF   +  +   K  +
Sbjct: 732 DHSVTEISLPDFINRELILFSM-ADNARSIPSSVDGFKPGQRKILFACFKRNL---KSEI 787

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
           K A+++G V     YH HG  ++   +  MAQ++  S  L ++E  G FG+    G   A
Sbjct: 788 KVAQLAGYVAEHSAYH-HGEQSLNATIVNMAQNFIGSNNLGVLEPLGQFGTRLQGGKDAA 846

Query: 127 AERYTECRLQKAA----HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           + RY    L   A    H   D L    VD     DG   EP       P +LVNG  GI
Sbjct: 847 SPRYIFTNLTPLARTVFHPSDDPLLTYLVD-----DGQNIEPEWYLPVLPMLLVNGADGI 901

Query: 183 AVGMATNIPTHNLGEVVDGCV 203
             G +++IP +N  ++V+ C+
Sbjct: 902 GTGWSSSIPNYNPRDIVE-CL 921


>gi|325068317|ref|ZP_08126990.1| DNA topoisomerase [Actinomyces oris K20]
          Length = 171

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 26/151 (17%)

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ             
Sbjct: 1   TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ------------- 47

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q   ILEL+L RLT     ++  E + L  EI+    IL+
Sbjct: 48  -------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILA 94

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
               L  ++ +EL +V ++  TPRRT ++E 
Sbjct: 95  DDVLLRRVVSRELAAVAEQFGTPRRTVLLEA 125


>gi|32453408|gb|AAP58316.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 55

 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           HG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   HGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 55


>gi|297790981|ref|XP_002863375.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309210|gb|EFH39634.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 34/280 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D   ++ IT +S  D + N  L Y     L R IP + DGLK   R+ILF + +   
Sbjct: 1   MQPDTHLDRSITRISYHDFI-NFELIYFFQANLERCIPSVADGLKLSSRKILFTLFKC-- 57

Query: 66  EWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS- 119
             NKK V   +++ +V     YH H   ++   + RMAQD+      + L++  G FGS 
Sbjct: 58  --NKK-VTVEQLASDVSKTCSYH-HSQQSLAKTIVRMAQDYVGSPNNVNLLDPDGQFGSR 113

Query: 120 VDGDPPAAER---YTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPN 173
           + G   A+     +TE  +     F  DD      D    Y   DG   EP+      P 
Sbjct: 114 ISGGKDASNPKYIFTELSVMARVLFPNDD------DVHLQYLKEDGKTIEPLCYMPVIPT 167

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVIL 232
           VLVNG  G+  G +T IP ++  E+ +    ++     I +D      +G    T   + 
Sbjct: 168 VLVNGARGVGSGWSTFIPKYDPREIAENIRRLLKGEVMIAMDPWYRKFKG----TIEKVK 223

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            + G+  A   G  +    G+  +     +   +V+TE+P
Sbjct: 224 SKAGVTTASKEGPCTYKTSGLFEVI----NETTLVITELP 259


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GK 84
           N  L    N+   R+IP L DGLKP  R++L+   +     +K+ +K A+++G V     
Sbjct: 706 NKELILFSNMDNERSIPSLVDGLKPGQRKVLYTCFKRN---DKREIKVAQLAGSVAEHSA 762

Query: 85  YHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKA 138
           YH HG  ++   +  +AQD+    ++ LLL  GQ  FG+    G   A+ RY    L   
Sbjct: 763 YH-HGEMSLMSTIIGLAQDFVGSNNINLLLPIGQ--FGTRLQGGKDAASPRYIFTMLSPL 819

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           A  ++  L    ++    YD + + EP       P VLVNG  GI  G +T +P ++  E
Sbjct: 820 ARLIVPALDDPVLNHL--YDDNQKIEPEFYMPILPMVLVNGAEGIGTGWSTKVPNYDPRE 877

Query: 198 VV 199
           VV
Sbjct: 878 VV 879


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++   +  +   KK +K  ++ G V     YH HG+A++   +
Sbjct: 795 RSIPSIADGLKPDQRKVIWSCFKRNL---KKEIKVIQLVGYVSEHSVYH-HGDASLTQTI 850

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQD+    +L LL+  GQ     + G   A+ RY    LQ  +  + +    D    
Sbjct: 851 VALAQDFVGSNNLNLLVPCGQYGTRDMGGKDHASARYINTLLQPISRTIFN--PDDDAIL 908

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            P  D +   EP       P VL+NG  GI  G +TN+P  N  ++V     +++N
Sbjct: 909 TPQTDENHVIEPEFYMPIVPMVLINGAEGIGTGWSTNVPGFNPLDIVANIRRLMNN 964


>gi|47094489|ref|ZP_00232164.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|47017134|gb|EAL07992.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
          Length = 334

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 21/225 (9%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
           + ++ E  +  ED++V+V+  GYVKR     Y A        + + M++ D    +  ++
Sbjct: 8   IKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS-----NGAELAMKEADHAIFIQKMN 62

Query: 585 THTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITT---IMPFPED 639
           +  S+L F+S G F+Y+  V  LP    +  G  + ++ S L+ GE I +   I  F E+
Sbjct: 63  SLDSLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEE 121

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDIL 697
           +        +F TK+G  +++ ++++ +  R  K  +A+KL   DE+L+V       DI 
Sbjct: 122 KR------FLFVTKNGMTKQSAITNY-KPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIF 174

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           L TK G  +R+ I+ I   +G  + GV+ I+L + D VI   +++
Sbjct: 175 LATKNGYGLRYSITEIPE-SGARTAGVKAINLKQDDIVIGGIVLM 218


>gi|186659436|dbj|BAG30949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 68.2 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 38/51 (74%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y +  RMAQ +SLR
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLR 51


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 19/170 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 779 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 834

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLL----DDLGKD 149
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      L     D L K 
Sbjct: 835 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTRLLCRPSDDPLLKR 894

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             D     D    EP       P VLVNG  GI  G +T IP +N  ++V
Sbjct: 895 QTD-----DNLLVEPEWYLPIIPMVLVNGAEGIGTGWSTTIPCYNPVDIV 939


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 11/168 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           RAIP   DG KP  R+IL+  ++  +   K  +K A++SG+V     YH HG A++ + +
Sbjct: 690 RAIPSSIDGWKPGQRKILWVCLKNNI---KNDLKVAQLSGKVSEQAAYH-HGEASLNETI 745

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             M QD+  S  + + +  G  G+    G+   + RY    L+K    +      D + +
Sbjct: 746 IGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVYTALEKITRTIFMKEDDDLLTY 805

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
             + +G   EPV      P VLVNG  GI VG ++ +P +   +++D 
Sbjct: 806 NTD-EGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVPQYCPQDIIDN 852


>gi|18104628|gb|AAL59625.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL+ +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELMEIKERFNDE 96

Query: 516 RRTRIV-EGLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTSGLETIEDEDL 114


>gi|4996107|dbj|BAA78332.1| parC [Staphylococcus epidermidis]
          Length = 52

 Score = 67.8 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 40/50 (80%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN
Sbjct: 3   YDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGN 52


>gi|50079975|gb|AAT69560.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 58

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 3/58 (5%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
           +V+GKYHPH ++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L
Sbjct: 1   DVLGKYHPHCDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKL 57


>gi|71842512|gb|AAZ43363.1| ParC [Escherichia coli]
          Length = 65

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP +
Sbjct: 5   KFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKS 60


>gi|294338122|emb|CBJ93960.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CP220]
          Length = 442

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 119/290 (41%), Gaps = 30/290 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI D   N    Y+    L R I    DGLK   R+I+   +   +    K      I  
Sbjct: 5   SIQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETK----VSIFD 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            ++  Y  + + +    +  MA  +  S  + L+EG+GNFGS   + PAA RY   + +K
Sbjct: 60  NMVQSYTQYLHGSCAGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKK 119

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHNLG 196
             + L D   KD +    N++GS  EPV      P +++NG   G+A G   NI   +L 
Sbjct: 120 YINDLFD--IKDVL-ISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLD 176

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            V+     +     +DL            P  A   G   +    ++        GV  +
Sbjct: 177 SVIK---YIKTGKKVDLK-----------PYIAGFKGTVELVEDASSNNTQWNFIGVVEV 222

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            K        ++TEIP  +     LE +  LV  K+I +  DL D+ +++
Sbjct: 223 NKNKA-----IITEIPPFIEYTKYLEILDNLVESKKIKNYKDLSDQRNQE 267


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 169/437 (38%), Gaps = 104/437 (23%)

Query: 8    SDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            SDE +   +G   VS T++++ + L Y        +IP L DGLKP  R+IL+ +++M  
Sbjct: 675  SDERKRWIRGSDEVSTTEDVEKTELNYE------ESIPSLIDGLKPSQRKILWTLLKMD- 727

Query: 66   EWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD 121
                  +K ++++G V  +  YH HG  ++   + RM Q +  +  + L++  G FG+  
Sbjct: 728  --ETTEMKVSQLAGAVAHRQSYH-HGEESLVRTIVRMGQTFCGASNMPLLQPIGQFGTRH 784

Query: 122  --GDPPAAERYTECRL-----QKAAHF--------------------------------- 141
              G+  A+ RY    L     QK   F                                 
Sbjct: 785  EGGNDAASARYIFTSLAYVDIQKTKQFREKRQMPFDSASQKTYMSPESSTSQGGVMTFPG 844

Query: 142  ------------LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
                        LL  +  D +  +   +G   EP  LC   P +LVNG  GI  G +T 
Sbjct: 845  WCYDIMTRPTTRLLFPIADDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTK 904

Query: 190  IPTHNLGEVVDGCVAVIDNPDI----------DLDALMEIIRGPDF-PTGAVILGRTGIK 238
            +   N  +V+D     ID   +          D    +EI+    F  TG + + R   K
Sbjct: 905  VANRNPVDVIDMIRRKIDLSSLVVNEIPPFYEDYKGKIEIVTPTKFISTGKIKISRPERK 964

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            NA                         + ++E+P  V  +   EK++ ++ +  I + ++
Sbjct: 965  NASTFS---------------------VEISELPIGVWTSKYKEKLSNILEKLPITEFSE 1003

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQ-LYRYTSLQSLFSVNMVAL--NGYKPERFTLI 355
             R    +  +R++ + K+ A      N  L  Y  L++  + N V    NG   E   + 
Sbjct: 1004 -RHTEKQVNFRLIFDRKKAARFLQKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVS 1062

Query: 356  GILKAFVAFREEVVVRR 372
             I   F   R+++  +R
Sbjct: 1063 EIANEFFEIRKDLYQKR 1079


>gi|207109271|ref|ZP_03243433.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 58

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
          E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +
Sbjct: 8  ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 27/195 (13%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           +IP + DG KP  R++L+   +  +   KK    A    +    YH HG  A+   +  M
Sbjct: 689 SIPSVLDGFKPGQRKVLYTCFKKNLTTEKKVANLAPAVSDYTA-YH-HGEQALVQTIIGM 746

Query: 101 AQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           AQ++  +  +  ++  G FG+    G   AA RY    L K A  +          F P 
Sbjct: 747 AQNFVGTNNIYFLKPNGAFGTRATGGKDAAAARYIYTELNKIARKV----------FHPA 796

Query: 157 YDGSFQ---------EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
            D  F+         EP       P VL+NG  GI  G +T+IP  N  +VV+    +++
Sbjct: 797 DDPLFRYVQEDEKTVEPEWYLPVVPMVLINGAEGIGTGWSTSIPPFNPLDVVNNIRHLLN 856

Query: 208 NPDIDLDALMEIIRG 222
             D ++D +    RG
Sbjct: 857 --DEEMDDMHPWFRG 869


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1400

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DG KP  R++L+G  +  +   +  +K A++ G +     YH HG  ++   +
Sbjct: 747 RSIPSILDGFKPGQRKVLYGCFKRNL---RSEIKVAQLVGYISEHTGYH-HGEGSLAQTI 802

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  +  L L++  G FGS    G   +A RY    +      + + L  D   +
Sbjct: 803 VGLAQNFVGANNLNLLQPIGLFGSRAAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLYTY 862

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             + D    EP       P +LVNG  GI  G +TNIP+ N  ++V
Sbjct: 863 VQD-DAQTVEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIV 907


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1400

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 11/166 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DG KP  R++L+G  +  +   +  +K A++ G +     YH HG  ++   +
Sbjct: 747 RSIPSILDGFKPGQRKVLYGCFKRNL---RSEIKVAQLVGYISEHTGYH-HGEGSLAQTI 802

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  +  L L++  G FGS    G   +A RY    +      + + L  D   +
Sbjct: 803 VGLAQNFVGANNLNLLQPIGLFGSRAAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLYTY 862

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             + D    EP       P +LVNG  GI  G +TNIP+ N  ++V
Sbjct: 863 VQD-DAQTVEPEAYLPIIPMLLVNGAEGIGTGWSTNIPSFNPVDIV 907


>gi|332141549|ref|YP_004427287.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551571|gb|AEA98289.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 80

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 45/61 (73%)

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K  ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE+KR  SA+V+LN LY   S +  
Sbjct: 19  KHRLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVKRNESAEVLLNHLYAIPSFKRY 78

Query: 337 F 337
           +
Sbjct: 79  W 79


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 37/372 (9%)

Query: 16   ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            +T + I+D +    + +++  N+   R+IP++ DG KP  R++++G  +  +    K   
Sbjct: 666  LTEIPISDFINKELILFSLADNI---RSIPNVLDGFKPGQRKVIYGSFKRNITSEIKIST 722

Query: 74   CARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
             A    E    YH HG  ++   +  +AQ +  S  + ++   G+FG+    G   AA R
Sbjct: 723  LANYVAE-QTDYH-HGPDSLAQTIIGLAQSFVGSNNIYVLNPIGSFGTRATGGKDAAAPR 780

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y    L K    +         ++    D +  EP       P +L+NGG GI  G +TN
Sbjct: 781  YISTELTKITRKIFHPFDDPLYNYL-QEDENTVEPEWYLPILPMLLINGGEGIGTGWSTN 839

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            IP  N  ++V     +++    +L+ +    RG    TG +   + G +     GR    
Sbjct: 840  IPPFNPLDIVRNLRHLMNGE--ELEEMHPWFRG---WTGTI--EKIGPQRYRVYGR---- 888

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQG 307
                  IE+T      + +TE+P ++  + + E +   +   +K    I DL +E    G
Sbjct: 889  ------IEQTGPC--ALEITELPARMWTSTLKEHLLLGLGGNDKMKPWIKDL-EEQHGNG 939

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGY-KPERFTLIG-ILKAFVAF 364
             R V+ L +       +   Y    L S  S+ NMVA + + K +++  +  IL  F   
Sbjct: 940  IRFVVRLTQEEMDKTRVMGFYERFKLISTISLNNMVAFDPHGKIKKYENVSEILTEFYYV 999

Query: 365  REEVVVRRTKYL 376
            R E   +R  Y+
Sbjct: 1000 RLEYYQKRKDYM 1011


>gi|115534553|ref|NP_503483.2| hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
 gi|103472086|gb|AAF60626.2| Hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
          Length = 616

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 75/175 (42%), Gaps = 23/175 (13%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGK 84
           N  L    N+   R+IP L DG KP  R++LF   +     +K  VK A+++G V  M  
Sbjct: 67  NRELVLFSNLDNERSIPCLVDGFKPGQRKVLFACFKRS---DKHGVKVAQLAGGVADMSA 123

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YH HG  ++   +  +AQD+                 G   A+ +Y   +L      L  
Sbjct: 124 YH-HGEQSLMTTIVHLAQDYG----------------GKDSASAQYIFTQLSPVTRTLFP 166

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
               + + F    +    EP   C   P VLVNG  GI  G  TNIP +N  E+V
Sbjct: 167 SHDDNVLRFLYEENQRI-EPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELV 220


>gi|110340818|gb|ABG67976.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 40

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQ
Sbjct: 1   ARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQ 40


>gi|18104624|gb|AAL59623.1| GyrA [Bacillus subtilis]
 gi|18104626|gb|AAL59624.1| GyrA [Bacillus subtilis]
 gi|18104630|gb|AAL59626.1| GyrA [Bacillus subtilis]
 gi|18104632|gb|AAL59627.1| GyrA [Bacillus subtilis]
 gi|18104638|gb|AAL59630.1| GyrA [Bacillus subtilis]
 gi|18104640|gb|AAL59631.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 96

Query: 516 RRTRIV-EGLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTSGLETIEDEDL 114


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|294338321|emb|CBJ94360.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CPt10]
          Length = 442

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 30/290 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ D   N    Y+    L R I    DGLK   R+I+   +   +    K      I  
Sbjct: 5   SVQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETK----VSIFD 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            ++  Y  + + +    +  MA  +  S  + L+EG+GNFGS   + PAA RY   + +K
Sbjct: 60  NMVQSYTQYLHGSCSGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKK 119

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHNLG 196
             + L D   KD +    N++GS  EPV      P +++NG   G+A G   NI   +L 
Sbjct: 120 YINDLFD--IKDVL-ISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLD 176

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            V+     +     +DL            P  A   G   +    ++        GV  +
Sbjct: 177 SVIK---YIKTGKKVDLK-----------PYIAGFKGTVELVEDASSNNTQWNFIGVVEV 222

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            K        ++TEIP  +     LE +  L+  K+I +  DL D+ +++
Sbjct: 223 NKNKA-----IITEIPPFIEYTKYLEILDNLIESKKIKNYKDLSDQRNQE 267


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 17/220 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++ G   + I++ +    + ++I     R+IP + DGLK   R+IL+   +  +   KK 
Sbjct: 786 DQYGAKKIKISEFINKELILFSI-ADCERSIPSIVDGLKISQRKILYSCFKRNL---KKE 841

Query: 72  VKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPP 125
           ++ A++ G V     YH HG A++   +  MAQD+  S  +  +   G+FGS    G   
Sbjct: 842 LRVAQLIGYVSEHSAYH-HGEASLASTIINMAQDYVGSNNINTLYPSGSFGSRLQGGKDS 900

Query: 126 AAERYTECRLQKAAHFLL--DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           +  RY    L+     L   DD   D +    N DG   +P       P VLVNG  GI 
Sbjct: 901 SQPRYIHTCLRDITRTLFHQDD---DNLLTYVNDDGKKVQPKWYMPTIPFVLVNGSSGIG 957

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDI-DLDALMEIIRG 222
            G +++IP +N  +++     ++D  ++ D+       RG
Sbjct: 958 TGYSSSIPNYNPRDLIQCMRDLLDEKEMTDIKPWYRGFRG 997


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 808 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 860

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 861 ELEQMHPWFRG 871


>gi|28193551|emb|CAD56008.1| topoisomerase IV [Providencia stuartii]
          Length = 58

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP +
Sbjct: 1   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKS 53


>gi|71842514|gb|AAZ43364.1| ParC [Escherichia coli]
          Length = 65

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G  D DP +
Sbjct: 5   KFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGVPD-DPKS 60


>gi|32453416|gb|AAP58320.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 53

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 37/47 (78%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           G++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 1   GDSSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 47


>gi|32453412|gb|AAP58318.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 66.2 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   GDSSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 54


>gi|291335074|gb|ADD94703.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 417

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 19/182 (10%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG---EVMGKYHPHGNAAIYD 95
           GR+IP L DGLK   R++L+ + +  + +  K +K  +++G   E  G YH HG   +YD
Sbjct: 126 GRSIPHLLDGLKESQRKVLYAVFKKKLSYKSKTLKVNQLAGFTAEHTG-YH-HGEQCLYD 183

Query: 96  ALARMAQDW----SLRLLLIEGQGNFGS-VDGDPPA-AERY--TECRLQKAAHFLLDDLG 147
            +  +A D     ++  L  +GQ  FGS +DG   A A RY  T+  +     F+  D  
Sbjct: 184 TIINLATDIMGKNNIPYLYRDGQ--FGSRLDGGKDASAGRYIFTKEDMLTRKLFIPSD-- 239

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNG-GGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            D +  R   DG   EP       P  LVNG   GI  G + ++P +N  ++V  C   I
Sbjct: 240 -DNLLPRNTDDGEPVEPRFYVPIIPTALVNGCQAGIGTGWSCSLPLYNPLDLVSSCKKWI 298

Query: 207 DN 208
            N
Sbjct: 299 KN 300


>gi|32453414|gb|AAP58319.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453418|gb|AAP58321.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 54


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 691 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 748

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 749 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 808

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 809 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMN--DE 861

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 862 ELEQMHPWFRG 872


>gi|18104642|gb|AAL59632.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFNDE 96

Query: 516 RRTRIV-EGLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTSGLETIEDEDL 114


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 14/170 (8%)

Query: 40  RAIPDLRDGLKPVHRRILF-GMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
           R+IP + DG K   R+++F  +  +G    K   K A+++G    + +YH HG  ++ + 
Sbjct: 664 RSIPKMLDGQKAGQRKVVFYALNHVG----KNEAKVAQMAGTAAQVTQYH-HGEVSLANT 718

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSVDG-DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           +  MA  +  S  L L+   G FGS    +  AA RY    +      L+     D + +
Sbjct: 719 IIGMAATYTGSHNLPLLYPSGQFGSRHAKNSAAAPRYIFTHISSFLPRLIKSEDNDVLTY 778

Query: 154 RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
             N D + + EP V     P VLVNG  GI  G   ++P +N  EV+D C
Sbjct: 779 --NVDENKKVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDAC 826


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 134/335 (40%), Gaps = 34/335 (10%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLL 109
           R  LFG  +  +    K +K A+  G V     YH HG  ++   +  MAQD+  S  + 
Sbjct: 683 RADLFGSFKKKL---YKEIKVAQFIGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNIN 738

Query: 110 LIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           L++  G FG+ +  G   A+ RY    L      L  +     +++  N DG   EP   
Sbjct: 739 LLKPNGQFGTCNLGGKDHASARYIYTELSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNWY 797

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT 227
               P VLVNG  GI  G ++ IP +N  E++     +++  ++              P 
Sbjct: 798 MPIIPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLLNGEEL-------------VPM 844

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKI 284
                G  G     A   G IV   V+ I     D +   +TE+P   +  +    LE I
Sbjct: 845 DPWYKGFRGTIEKSAKEGGYIVNGTVTEI-----DEQTFRITELPIRKWTQDYKQFLESI 899

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVA 343
            +     +   I D R   D     + I++K    A ++   L++   L S  S  NM  
Sbjct: 900 TDGAPNVKDPLIEDFRQNGDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNMHL 959

Query: 344 LNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLL 377
            +    ++F T   IL+ F   R +   +  +Y+L
Sbjct: 960 FDAEGNKKFDTPEQILEEFFPLRLDYYEKSKEYIL 994


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 272 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 329

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 330 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 389

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 390 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 442

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 443 ELEQMHPWFRG 453


>gi|9957073|gb|AAG09201.1|AF175687_1 topoisomerase IV [Bacteroides fragilis]
          Length = 58

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MA  +S R  L++GQGN+G
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAHPFSYRYPLVDGQGNWG 58


>gi|33316580|gb|AAQ04610.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 97

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F  STH  +LFF++ G VY+ K + LP     ARG+ + N+L+    ERI  ++     E
Sbjct: 9   FCCSTHDWILFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE 68

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +    Y+V AT++G V+++KL+DF   NRSG
Sbjct: 69  DA---PYLVLATQNGLVKKSKLTDF-DSNRSG 96


>gi|18104636|gb|AAL59629.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  +L   I E  DIL++  ++L II++EL  +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYQTLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 96

Query: 516 RRTRIV-EGLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTSGLETIEDEDL 114


>gi|228478514|gb|ACQ41843.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 65.5 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 35/41 (85%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ARI G+V+GKYHPHG+ A+Y  + RMAQD+SLR +LI+GQG
Sbjct: 4   ARIVGDVIGKYHPHGDTAVYGTIVRMAQDFSLRYMLIDGQG 44


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 282 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 339

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA----HFLLDDLGKDTV 151
           +AQ++  S  + L+   G FG+    G   AA RY    L K      H   D L K   
Sbjct: 340 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 399

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D 
Sbjct: 400 E-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--DE 452

Query: 212 DLDALMEIIRG 222
           +L+ +    RG
Sbjct: 453 ELEQMHPWFRG 463


>gi|307101850|gb|EFN50438.1| hypothetical protein CHLNCDRAFT_55891 [Chlorella variabilis]
          Length = 154

 Score = 65.1 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           ++G  ++++D + ++  V+ H  +LFF++ G  Y  + + +P G+  A G A+  +L  +
Sbjct: 1   KAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFD 60

Query: 626 QGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +  RI  ++P     ++  +    VV  T+ G ++R  L  F  INRSG +AM +    E
Sbjct: 61  KSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRVPQE 120

Query: 684 IL--SVETCTQENDILLTTKLGQC 705
           +   S   C  +    L T L  C
Sbjct: 121 LRMKSAVACALDPSRSLATTLAPC 144


>gi|18104620|gb|AAL59621.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRSSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L II++EL  +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFNDE 96

Query: 516 RRTRIVE-GLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTAGLETIEDEDL 114


>gi|406489|gb|AAD12504.1| DNA gyrase B [Mycoplasma genitalium]
          Length = 77

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 38/44 (86%)

Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
          + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G
Sbjct: 20 VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYG 63


>gi|18104634|gb|AAL59628.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 96

Query: 516 RRTRIVE-GLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTAGLETIEDEDL 114


>gi|18104622|gb|AAL59622.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 27/138 (19%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           +LD V+ +IR S   E AR  L+++                            L+E Q +
Sbjct: 3   HLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQAQ 36

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L II++EL  +K+  +  
Sbjct: 37  AILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFNDE 96

Query: 516 RRTRIVE-GLLDMEDEDC 532
           RRT IV  GL  +EDED 
Sbjct: 97  RRTEIVTAGLETIEDEDL 114


>gi|270676214|ref|ZP_06222680.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
 gi|270316446|gb|EFA28324.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
          Length = 76

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 46/70 (65%)

Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
          +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7  EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74 CARISGEVMG 83
           AR  G+V+G
Sbjct: 67 SARTVGDVLG 76


>gi|71842518|gb|AAZ43366.1| ParC [Escherichia coli]
          Length = 65

 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           K+ K AR  G+V+GKYHPHG+ A Y A+  M Q +S R  L++GQGN+G+ D DP +
Sbjct: 5   KFKKSARTVGDVLGKYHPHGDIACYGAMVLMVQPFSYRYPLVDGQGNWGAPD-DPKS 60


>gi|315273180|ref|ZP_07869219.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616193|gb|EFR89279.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 171

 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 56/190 (29%)

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           FP   IRV  GR + GVRGI L + D+VI M +                           
Sbjct: 2   FPEENIRVM-GRTAAGVRGIRLREDDEVIGMEV--------------------------- 33

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                  L++D  V                   L V+EKG+GK+T +  + + NR G G+
Sbjct: 34  -------LEDDEKV-------------------LVVTEKGYGKQTPASQYPLRNRGGMGV 67

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +   +++ N  G LVA+  V   + ++L++  G LIR  +  +    R+  GV +    +
Sbjct: 68  KTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDE 125

Query: 888 DERVVSVERI 897
           DE+V +V ++
Sbjct: 126 DEKVATVAKV 135



 Score = 38.5 bits (88), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           V+  T+ G  ++   S +   NR G   K     +    +++++T T E D++L T  G 
Sbjct: 40  VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 99

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +RF I  +    GR+++GV+ I L + ++V ++A V
Sbjct: 100 LIRFEIETVS-QTGRSAMGVKLIRLDEDEKVATVAKV 135


>gi|3660560|dbj|BAA33440.1| This sequence corresponds to the amino acid positions 54 to 104 of
           E.coli parC gene [Enterococcus faecium]
          Length = 49

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ++K + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  G
Sbjct: 1   YDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHG 49


>gi|202073603|gb|ACH96272.1| topoisomerase IV ParC subunit [Waddlia chondrophila WSU 86-1044]
 gi|202073605|gb|ACH96273.1| topoisomerase IV ParC subunit [Waddlia chondrophila]
          Length = 73

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 9/79 (11%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL  + ++    + K  K A ++G+ M  YHPHG+AAI DAL  MA     
Sbjct: 2   DGLKPVQRRILHTLYKIH---DGKLHKVANVAGQTMA-YHPHGDAAIIDALVNMAN---- 53

Query: 107 RLLLIEGQGNFGSV-DGDP 124
           +   ++ QGNFG++  GDP
Sbjct: 54  KGFFLDCQGNFGNIYTGDP 72


>gi|2598665|dbj|BAA23308.1| CfparC [Citrobacter freundii]
 gi|2780357|dbj|BAA24279.1| parC [Enterobacter cloacae]
          Length = 49

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 37/47 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 2   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 48


>gi|326535809|gb|ADZ76571.1| DNA gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 40

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQ 40


>gi|325972892|ref|YP_004249956.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
 gi|323651494|gb|ADX97576.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
          Length = 335

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 80/377 (21%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +++  S   ++  +P + +    +  KG   SG++  D D + D+  +S++  +L  ++ 
Sbjct: 7   LLLAFSRRNFIVSLPYAEFNLGEKIEKGINLSGLISTD-DMIRDVIALSSNDDLLIITNK 65

Query: 596 GFVYKEKVWRL-PIGSPQARGKALINI------LSLNQG-----ERITTIMPFPEDESSW 643
           G +Y+ +  +L  +    +    L+ +      L L+       E+I  I+   E     
Sbjct: 66  GKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINV-EPSKYL 124

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++ ++  A+K G +++ K+ +F   ++SG I M L   DE++S       ++ILLT+  G
Sbjct: 125 DSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFG 184

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           + VRF    +R   G+ ++GVRGI L  +KG++                          +
Sbjct: 185 RVVRFKSIDLRD-VGKTAMGVRGIKLVNSKGEK--------------------------E 217

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
             LIS            S+ +G            KE F+LT    G GK      FR+++
Sbjct: 218 GELISA----------SSNADG------------KEVFVLT--NLGKGKWVHIDHFRMTS 253

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIRVPVNEI-RIASRAT 877
           R   G+ +         G  +  F +N N+   +I ++++ G + R+PVN + +   RAT
Sbjct: 254 RGVAGVLSQ-----KGYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRAT 308

Query: 878 KGVVI--FSTAKDERVV 892
            GV I   + +++E++V
Sbjct: 309 SGVSIMKLNHSRNEKIV 325



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 113/268 (42%), Gaps = 46/268 (17%)

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRT---RIVEGLLDME-----DEDCIVR---- 535
           L I++++ ++      +LL VK EL +  +    + V  LLD++     D++ I++    
Sbjct: 59  LLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINV 118

Query: 536 -------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTH 586
                     +   S  G +K++ +  ++   + G    G+VM  + ED V    IV   
Sbjct: 119 EPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSG----GIVMGLQGEDEVVSALIVRDA 174

Query: 587 TSVLFFSSLGFVYKEK------VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             +L  SS G V + K      V +  +G    RG  L+N     +GE I+         
Sbjct: 175 DEILLTSSFGRVVRFKSIDLRDVGKTAMG---VRGIKLVNSKGEKEGELISA-------S 224

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILS--VETCTQENDI 696
           S+ +   V   T  G  +   +  F   +R  +G ++ K    DEI S  +       +I
Sbjct: 225 SNADGKEVFVLTNLGKGKWVHIDHFRMTSRGVAGVLSQK-GYGDEIFSFTININNPLEEI 283

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            + T LG+  R P++A+    GR + GV
Sbjct: 284 FMLTNLGKVSRIPVNAVSQRKGRATSGV 311


>gi|148645150|gb|ABR01099.1| GyrA [uncultured Geobacter sp.]
          Length = 131

 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 54/184 (29%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  D++++V     + D+LL T  G+ +RF  S +R  + R S GVRG+SL   D
Sbjct: 2   IAVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVS-RVSRGVRGMSLDADD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI M I+                       +SG T                        
Sbjct: 61  VVIGMEIIND---------------------MSGST------------------------ 75

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 + TV+E GFGKRT   ++R  +R GKGI     ++ N  G +V +  VND + +
Sbjct: 76  ------LFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERN--GCVVDIMQVNDENDL 127

Query: 854 ILVS 857
           +L++
Sbjct: 128 MLIT 131


>gi|1805621|dbj|BAA11412.1| GryA [Staphylococcus haemolyticus]
          Length = 40

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQ
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQ 40


>gi|148645152|gb|ABR01100.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 53/184 (28%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  D++++V       D+LL +K G+C+RF    +R   GR S GVRG++L   D
Sbjct: 2   IAVNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRT-VGRVSRGVRGMTLEDDD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI M I+                            E  T    DS+             
Sbjct: 61  VVIGMTIL---------------------------NENFT----DST------------- 76

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  V+D + +
Sbjct: 77  ------IFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERN--GCVVDIKQVSDENDL 128

Query: 854 ILVS 857
           +L++
Sbjct: 129 MLIT 132


>gi|309800472|ref|ZP_07694627.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
 gi|308115891|gb|EFO53412.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
          Length = 144

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 2/102 (1%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L ++EKG+GKRT + ++    R+GKG++  +V++ N  G L  +  V  ++ +++++D 
Sbjct: 31  VLIITEKGYGKRTVATEYPTKGRAGKGMKTANVTEKN--GPLAGLLTVKGDEDLMIITDT 88

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G +IR  V  I    R+T GV +    +D ++V+   +  +E
Sbjct: 89  GVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTSVAAAE 130


>gi|1041427|emb|CAA60601.1| DNA gyrase [Mycobacterium abscessus]
 gi|1041431|emb|CAA60603.1| DNA gyrase [Mycobacterium avium]
 gi|1041434|emb|CAA60604.1| DNA gyrase [Mycobacterium bovis]
 gi|1041436|emb|CAA60605.1| DNA gyrase [Mycobacterium chelonae]
 gi|1041442|emb|CAA60607.1| DNA gyrase [Mycobacterium kansasii]
 gi|1041444|emb|CAA60608.1| DNA gyrase [Mycobacterium leprae]
 gi|2815371|emb|CAA76163.1| DNA gyrase [Mycobacterium fortuitum]
 gi|2815373|emb|CAA76162.1| DNA gyrase [Mycobacterium gastri]
 gi|2815375|emb|CAA76159.1| DNA gyrase [Mycobacterium intracellulare]
 gi|2815377|emb|CAA76161.1| DNA gyrase [Mycobacterium marinum]
 gi|2815379|emb|CAA76160.1| DNA gyrase [Mycobacterium ulcerans]
 gi|31559441|emb|CAD92759.1| DNA gyrase subunit A [Mycobacterium africanum]
 gi|31559443|emb|CAD92760.1| DNA gyrase subunit A [Mycobacterium smegmatis]
 gi|31559445|emb|CAD92761.1| DNA gyrase subunit A [Mycobacterium gordonae]
 gi|31559447|emb|CAD92762.1| DNA gyrase subunit A [Mycobacterium intracellulare]
 gi|31559449|emb|CAD92763.1| DNA gyrase subunit A [Mycobacterium leprae]
 gi|31559453|emb|CAD92765.1| DNA gyrase subunit A [Mycobacterium malmoense]
 gi|31559455|emb|CAD92766.1| DNA gyrase subunit A [Mycobacterium simiae]
 gi|31559497|emb|CAD92767.1| DNA gyrase subunit A [Mycobacterium szulgai]
 gi|31559499|emb|CAD92768.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|31559501|emb|CAD92769.1| DNA gyrase subunit A [Mycobacterium ulcerans]
 gi|294478221|gb|ADE87458.1| DNA gyrase A [Mycobacterium massiliense]
 gi|313759698|gb|ADR79161.1| DNA gyrase A [Mycobacterium bolletii]
 gi|326535749|gb|ADZ76541.1| DNA gyrase A [Mycobacterium [chelonae] ATCC 14472]
 gi|326535763|gb|ADZ76548.1| DNA gyrase A [Mycobacterium phlei]
 gi|326535765|gb|ADZ76549.1| DNA gyrase A [Mycobacterium porcinum]
 gi|326535769|gb|ADZ76551.1| DNA gyrase A [Mycobacterium smegmatis]
 gi|326535811|gb|ADZ76572.1| DNA gyrase A [Mycobacterium abscessus ATCC 19977]
 gi|326535817|gb|ADZ76575.1| DNA gyrase A [Mycobacterium massiliense]
 gi|328670897|gb|AEB26324.1| DNA gyrase A [Mycobacterium massiliense]
          Length = 40

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|148645148|gb|ABR01098.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 53/184 (28%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  D+++SV       D+LL +K G+ +RF    +R   GR S GVRG+ L   D
Sbjct: 2   IAVNLDEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRT-VGRVSRGVRGMMLEDDD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI MAI+              +H +                  DS+             
Sbjct: 61  VVIGMAIL-------------NEHFT------------------DST------------- 76

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 + TV+E G+GKRT   ++R   R GKGI     ++ N  G +V +  VND++ +
Sbjct: 77  ------LFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERN--GCVVDIKQVNDDNDL 128

Query: 854 ILVS 857
           +L++
Sbjct: 129 MLIT 132


>gi|325989385|ref|YP_004249084.1| similar to DNA gyrase subunit alpha (probable fragment) [Mycoplasma
           suis KI3806]
 gi|323574470|emb|CBZ40120.1| similar to DNA gyrase, A subunit (probable fragment) [Mycoplasma
           suis]
          Length = 335

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 80/377 (21%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +++  S   ++  +P + +    +  KG   SG++  D D + D+  +S++  +L  ++ 
Sbjct: 7   LLLAFSRRNFIVSLPYAEFNLGEKIEKGINLSGLISTD-DMIRDVIALSSNDDLLIITNK 65

Query: 596 GFVYKEKVWRL-PIGSPQARGKALINI------LSLNQG-----ERITTIMPFPEDESSW 643
           G +Y+ +  +L  +    +    L+ +      L L+       E+I  I+   E     
Sbjct: 66  GKIYRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINV-EPSKYL 124

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++ ++  A+K G +++ K+ +F   ++SG I M L   DE++S       ++ILLT+  G
Sbjct: 125 DSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFG 184

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           + VRF    +R   G+ ++GVRGI L  +KG++                          +
Sbjct: 185 RVVRFKSIDLRD-VGKTAMGVRGIKLVNSKGEK--------------------------E 217

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
             LIS            S+ +G            KE F+LT    G GK      FR+++
Sbjct: 218 GELISA----------SSNADG------------KEVFVLT--NLGKGKWVYIDHFRMTS 253

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIRVPVNEI-RIASRAT 877
           R   G+ +         G  +  F +N N+   +I ++++ G + R+PVN + +   RAT
Sbjct: 254 RGVAGVLSQ-----KGYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRAT 308

Query: 878 KGVVI--FSTAKDERVV 892
            GV I   + +++E++V
Sbjct: 309 SGVSIMKLNHSRNEKIV 325


>gi|76664886|emb|CAJ17879.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 135

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 27/159 (16%)

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + ++D  +R+I+ S + + A++ LM                  S Y           E+Q
Sbjct: 2   LKDIDTAIRLIKSSADIKEAQQNLM------------------SQY--------RFDEIQ 35

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
           ++AILE+ L +L       +  E  +L  EI EC  I+ S+++   I+++ELL +K +  
Sbjct: 36  SKAILEMSLQKLANQETQKLITEEANLTQEILECQSIIDSQTKKEKILEKELLEIKKKYQ 95

Query: 514 TPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             R+T +  +  LD++DED I  + +VVT+++ GY+K V
Sbjct: 96  DERKTVLNFDASLDVKDEDLIEEKTIVVTITNEGYIKSV 134


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 18/192 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP++ DG KP  R++L+G  +  ++   K  + A    E    YH HG  ++   +  
Sbjct: 270 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 327

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER---YTECR--LQKAAHFLLDDLGKDT 150
           +AQ++  S  + L+   G FG+    G   AA R   YTE     +K  H   D L K  
Sbjct: 328 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARXYIYTELNKLTRKIFHPADDPLYKYI 387

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +     D    EP       P +LVNG  GI  G +T IP  N  E++     +++  D
Sbjct: 388 QE-----DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMN--D 440

Query: 211 IDLDALMEIIRG 222
            +L+ +    RG
Sbjct: 441 EELEQMHPWFRG 452


>gi|116489836|gb|ABJ98821.1| GyrA [Enterobacter cloacae]
          Length = 40

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 35/40 (87%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQ
Sbjct: 1   ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQ 40


>gi|207110961|ref|ZP_03245123.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D + ED I  E MVV++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +T
Sbjct: 14  DYKIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANT 73

Query: 586 H 586
           H
Sbjct: 74  H 74


>gi|4768994|gb|AAD29710.1|AF140497_1 hypothetical protein [Oryza sativa]
          Length = 142

 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +LSL+ GERIT+I+P   F ED+      Y+V  T +G +++  L+ F  I  SG I+++
Sbjct: 2   LLSLSDGERITSIVPVNEFGEDQ------YLVMLTVNGYIKKVPLNAFSAIRTSGIISIQ 55

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE+  V  C  ++ + L ++ G  +    + +R   GR + GV  + L +GD++ S
Sbjct: 56  LAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGVLAMKLKEGDKMAS 114

Query: 738 MAIVLHADADYDERICYMKHMSAQ 761
           M I+     +  E    ++ +S  
Sbjct: 115 MDIIPATSHNMPETYSRVRDLSPH 138


>gi|312270883|gb|ADQ55849.1| topoisomerase II medium subunit [Escherichia phage PhaxI]
          Length = 446

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 162/397 (40%), Gaps = 61/397 (15%)

Query: 18  SVSITDEMQNSYLTYAI-NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           S+++T+ +   +  +++ N I  R IP L D LKP  R+ILF      +E+NK+ +   R
Sbjct: 8   SITVTEFINGDHKEFSVVNSI--RQIPQLIDSLKPSQRKILFA----ALEYNKEEI-VDR 60

Query: 77  ISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           +      +  +  G   +   +  MAQ +  +  +   +  G FGS+ G    + RY   
Sbjct: 61  LGMFAAARTNYKSGGENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGREAPSARYISV 120

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            + +    +        +++  NY G  + EP       P  LVNG  GI  G AT+ P 
Sbjct: 121 AVSEVIRKIFRKEDDGILEY--NYLGEEKLEPKFFLPILPMFLVNGINGIGSGYATDPPC 178

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD----FPTGAVILGRTGIKNAYATGRGSI 248
           H        CV  +      L AL  ++RG D     P      G TG      T  G  
Sbjct: 179 H--------CVKSV------LSALRALLRGKDPKDLKPYWNGFKGETGY-----TEEGRA 219

Query: 249 VIRGV-SHIEKTSGDREQIVVTEIPY-QVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             RG+   +  T+     + +TE+P    +K    + +  L +   + + A   +++   
Sbjct: 220 YCRGLFPRVNATT-----LNITEVPIGWFSKTYETKVLLPLYKAGVLTEYA---NDTTED 271

Query: 307 GYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPE----RFT-LIGIL 358
           G+ + +  KRG  +   D  + Q++R      L+S N      +  +    R+     +L
Sbjct: 272 GWDITVVFKRGELSKLNDEQVEQMFR------LYSANKPVWTAWDEDGVIHRYDGWKDML 325

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
             F  +R      R +YL+ +  D+ H L   AI + 
Sbjct: 326 LPFFNYRLSRYEDRRQYLIKELTDKIHRLNNRAIFIG 362


>gi|31559503|emb|CAD92770.1| DNA gyrase subunit A [Mycobacterium xenopi]
          Length = 40

 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD L RMAQ WS+R  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQ 40


>gi|1041429|emb|CAA60602.1| DNA gyrase [Mycobacterium aurum]
 gi|1041440|emb|CAA60606.1| DNA gyrase [Mycobacterium fortuitum]
 gi|1041616|emb|CAA60609.1| DNA gyrase [Mycobacterium peregrinum]
 gi|326535743|gb|ADZ76538.1| DNA gyrase A [Mycobacterium agri]
 gi|326535745|gb|ADZ76539.1| DNA gyrase A [Mycobacterium aichiense]
 gi|326535747|gb|ADZ76540.1| DNA gyrase A [Mycobacterium aurum]
 gi|326535751|gb|ADZ76542.1| DNA gyrase A [Mycobacterium chitae]
 gi|326535753|gb|ADZ76543.1| DNA gyrase A [Mycobacterium chubuense]
 gi|326535755|gb|ADZ76544.1| DNA gyrase A [Mycobacterium flavescens]
 gi|326535757|gb|ADZ76545.1| DNA gyrase A [Mycobacterium gadium]
 gi|326535759|gb|ADZ76546.1| DNA gyrase A [Mycobacterium neoaurum]
 gi|326535761|gb|ADZ76547.1| DNA gyrase A [Mycobacterium parafortuitum]
 gi|326535767|gb|ADZ76550.1| DNA gyrase A [Mycobacterium rhodesiae]
 gi|326535771|gb|ADZ76552.1| DNA gyrase A [Mycobacterium vaccae]
 gi|326535813|gb|ADZ76573.1| DNA gyrase A [Mycobacterium chelonae]
 gi|326535815|gb|ADZ76574.1| DNA gyrase A [Mycobacterium fortuitum]
          Length = 40

 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|31559451|emb|CAD92764.1| DNA gyrase subunit A [Mycobacterium fortuitum]
          Length = 40

 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDPLVRMAQPWSLRYPLVDGQ 40


>gi|213025398|ref|ZP_03339845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 98

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ 
Sbjct: 6   GSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV- 64

Query: 899 ESEIVDEAE 907
            +E VD+ E
Sbjct: 65  -AEPVDDEE 72


>gi|313611846|gb|EFR86317.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-208]
          Length = 169

 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 56/189 (29%)

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P   IRV  GR + GVRGI L + D+VI M +                            
Sbjct: 1   PEENIRVM-GRTAAGVRGIRLREDDEVIGMEV---------------------------- 31

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                 L++D  V                   L V+EKG+GK+T +  + + NR G G++
Sbjct: 32  ------LEDDEKV-------------------LVVTEKGYGKQTPASQYPLRNRGGMGVK 66

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              +++ N  G LVA+  V   + ++L++  G LIR  +  +    R+  GV +    +D
Sbjct: 67  TVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDED 124

Query: 889 ERVVSVERI 897
           E+V +V ++
Sbjct: 125 EKVATVAKV 133



 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           V+  T+ G  ++   S +   NR G   K     +    +++++T T E D++L T  G 
Sbjct: 38  VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 97

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +RF I  +    GR+++GV+ I L + ++V ++A V
Sbjct: 98  LIRFEIETVS-QTGRSAMGVKLIRLDEDEKVATVAKV 133


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 15/168 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP + DG KP  R++LF   +  +   K  +K A+++G V     YH HG  ++   +
Sbjct: 717 RSIPSVVDGFKPSQRKVLFACFKRNL---KDEIKVAQLAGYVAEHSAYH-HGEVSLAGTI 772

Query: 98  ARMAQDWS----LRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             MAQ+++    + LLL  GQ  FG+    G   A+ RY   +L      +        +
Sbjct: 773 VNMAQNYTGSNNINLLLPLGQ--FGTRLQGGKDAASARYIFTKLATLTRLIFPANDDSLL 830

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           ++  + DG   EP       P  L+NG  GI  G ++++P  +  +VV
Sbjct: 831 NYL-DEDGQRIEPEWYMPILPLSLINGCEGIGTGWSSSVPNFSPRDVV 877


>gi|317498960|ref|ZP_07957243.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893793|gb|EFV15992.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 194

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           +NM+A+   +PE   L GI++    F  EV  R+ K LL+K  ++  +  GL  A   +D
Sbjct: 1   MNMLAIVDGRPETLDLKGIIENHTQFYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMID 60

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            ++ IIR S + +  +  L +      + K        SS ++     +  ++ Q  AIL
Sbjct: 61  LIIEIIRGSKSQKEVKACLTKGDVGNINFK--------SSDSMIEATKLSFTDKQASAIL 112

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           +L+L RL GL    ++ E   +  +I+E  D+L++   L  +I++EL  +K  LD  
Sbjct: 113 DLKLYRLIGLEILMLKEEYEEILAKIEEYEDVLNNEKSLKNVIRKELDKIKKNLDAK 169


>gi|282599189|ref|YP_003358501.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
 gi|226973495|gb|ACO94248.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
          Length = 446

 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 158/392 (40%), Gaps = 53/392 (13%)

Query: 18  SVSITDEMQNSYLTYAI-NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           S+++TD +   +  +++ N I  R IP L D LKP  R+ILF      +E+NK+ +   R
Sbjct: 8   SITVTDFVNTDHKQFSVVNSI--RQIPQLIDSLKPSQRKILFA----ALEYNKEEI-VDR 60

Query: 77  ISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           +      +  +  G   +   +  MAQ +  +  +   +  G FGS+ G   ++ RY   
Sbjct: 61  LGMFAAARTNYKSGGENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGRDASSARYISV 120

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +      +     +  +++  NY G  + EP       P  LVNG  GI  G +T+ P 
Sbjct: 121 AVSDVIRKIFRKEDEGILEY--NYLGEERLEPKFFLPILPMFLVNGINGIGTGYSTDTPC 178

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD----FPTGAVILGRTGIKNAYATGRGSI 248
           H        CV  +      L AL  ++RG D     P      G TG      T  G  
Sbjct: 179 H--------CVKSV------LSALRALLRGEDPKDLKPYWNGYKGETGY-----TEEGRA 219

Query: 249 VIRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             RG+   +  T+     + +TE+P  V   A   +   L+   +   + +  +++   G
Sbjct: 220 YSRGIFRRVNATT-----LHITEVP--VGWFAKTYETKVLLPLYKAGILTEYANDTTEDG 272

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE----RFT-LIGILKAFV 362
           + + +  KRG  + +   Q+     +  L+S N      +  +    R+     +L  F 
Sbjct: 273 WDITVVFKRGELSKLSDEQV---EQMFKLYSANKPVWTAWDEDGVIHRYAGWQDMLLPFF 329

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
            +R      R +YLL    DR   L   A+ +
Sbjct: 330 NYRLSRYEDRRQYLLKDMADRIRKLGDRAVFI 361


>gi|213025984|ref|ZP_03340431.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 39

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 35/39 (89%)

Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
          ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G
Sbjct: 1  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 39


>gi|197111784|gb|ACH43047.1| ParC subunit A of topoisomerase IV [Enterococcus faecium]
          Length = 51

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           ++K + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE
Sbjct: 2   YDKGFGKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIE 47


>gi|313640113|gb|EFS04735.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 140

 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++ +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V   + ++L+
Sbjct: 7   DEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLM 64

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  G LIR  ++ +    R+  GV +    +DE+V +V ++
Sbjct: 65  TVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 105



 Score = 38.1 bits (87), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           V+  T+ G  ++   S +   NR G   K     +    +++++T T E D++L T  G 
Sbjct: 10  VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGV 69

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +RF I  +    GR+++GV+ I L + ++V ++A V
Sbjct: 70  LIRFEIDTVS-QTGRSAMGVKLIRLDEDEKVATVAKV 105


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent
           virus]
          Length = 1113

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 115/268 (42%), Gaps = 27/268 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   + +  + I+D M +  + ++      R++    DG K   R+I++ + +     + 
Sbjct: 665 DHHREAVIDLKISDFMHHEMIKFSYE-DCRRSLASCIDGFKESQRKIIYAVRKKFRSNST 723

Query: 70  KYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDP 124
           +++K A++SG V  +  + HG   + + + + AQD+  +  + L+E  G FG+    G  
Sbjct: 724 EFIKVAQLSGYVAEQTDYKHGEQNLCETIVKFAQDFVGANNVQLLEPDGQFGTRLEGGKD 783

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY   +  K   ++  +     ++       S  EPV      P VLVNG  GI  
Sbjct: 784 SAAPRYIYTKPHKILPYIFREEDDPILE-----QSSEGEPVHFVPIIPLVLVNGSVGIGT 838

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G +  +P +N  E++    A + + D   +AL+     P  P      G+       ATG
Sbjct: 839 GWSCFVPQYNPLELIRYIEARLTSQDS--EALL-----PAKPWYRNFTGKVA-----ATG 886

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            G     G         D + + VTE+P
Sbjct: 887 PGKFTTFG----RMKQVDADTVRVTELP 910


>gi|282599156|ref|YP_003359073.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
 gi|257219226|gb|ACV50241.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
          Length = 449

 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 128/305 (41%), Gaps = 24/305 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +SI+  +Q  +  YA      R IP + DGLKP  R+I+   ++      K+ VK A
Sbjct: 1   MKEISISQHIQGDHKAYA-TYDNQRNIPHIADGLKPSLRKIIHTAIETMR--GKEEVKVA 57

Query: 76  RISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYT 131
            +      + +Y  HG  +I DA+  + +++  +  L L++ QG FG++  +  +  RY 
Sbjct: 58  ALGSRASDLTEYG-HGEDSIIDAVVTLGRNYRGTNNLPLLQKQGQFGTMVDNDASEPRYI 116

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
                        +  +  +DF+ + +G   EPV      P VL+N   G+  G ++ I 
Sbjct: 117 HVSRHANLSHCFKEEDRAILDFQVS-EGKTIEPVFFLPPLPLVLINASSGVGNGYSSKIL 175

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             +   +++   A+++   I+ +  +     P FP      GR       ATG  S  I 
Sbjct: 176 PRSPQALIEMSKAILNETPINPEWSL-----PHFPG---FKGRVK-----ATGPCSYEIH 222

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   I+     + +  + ++P          K  EL+       I +   +S  Q + + 
Sbjct: 223 GA--IQLNPKAKTEFTIIDLPPDSKYQYEQFKERELLPLLDSKTIKNFESDSTEQAWSIK 280

Query: 312 IELKR 316
           ++  R
Sbjct: 281 VQSTR 285


>gi|71902126|ref|ZP_00684158.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71728115|gb|EAO30314.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 352

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 114/274 (41%), Gaps = 30/274 (10%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LS+ QT  IL+ +L +L  L    IR+E ++L  E  E   IL S  +L  +IK ELL+ 
Sbjct: 21  LSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIKDELLAD 80

Query: 509 KDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
                  RR  +V  +    +++ + +  E M V +S  G++            R  KG 
Sbjct: 81  AKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWI------------RAAKGH 128

Query: 567 ----SGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
               SG+  R+ D  +  +   STH  V F  S G  Y   V  LP  S +  G+ L   
Sbjct: 129 DVDPSGMSYREGDRLLAAVRTRSTH-QVSFLDSEGRAYSTLVHTLP--SARGNGEPLTGR 185

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
            S   G     +       S+ N+   V A+ HG     +  +    N++GK  + L   
Sbjct: 186 FSPAPGASFQAMA------SADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPG 239

Query: 682 DEILSVETCT--QENDILLTTKLGQCVRFPISAI 713
            +++ +   T  Q + I+  T  G  +    S +
Sbjct: 240 AQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASEL 273


>gi|145629329|ref|ZP_01785128.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978832|gb|EDJ88555.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 80

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+ER+
Sbjct: 6   GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLERV 64


>gi|46203585|ref|ZP_00051310.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 66

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 6/66 (9%)

Query: 1  MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
          MT+  ++ D      I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1  MTQPAVTGD------IRDTPLADALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61 MQMGVE 66
           Q+ ++
Sbjct: 55 RQLKLD 60


>gi|28193555|emb|CAD56010.1| DNA gyrase [Providencia stuartii]
          Length = 40

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 35/40 (87%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQ
Sbjct: 1   ARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQ 40


>gi|133853611|gb|ABO39036.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IY+AL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYNALVRMAQDFSMRDPLI 37


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 545 RSIPSVADGLKPGQRKVVWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEASLAATI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G +G+ D  G   A+ RY    +      +    G D +  
Sbjct: 601 INLAQNYVGSNNINLLKPNGQYGTRDQGGKDHASPRYIYTEVMPLTRMICHPAG-DPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYMPVVPLVLVNGAEGIGTGW 692


>gi|167946604|ref|ZP_02533678.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           +LDDL K+TVDF PNYD S  EP VL AR PN+L+NG  GI
Sbjct: 1   MLDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGI 41


>gi|116282953|gb|ABJ97452.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 51

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 34/50 (68%)

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           Y A+ RMAQD++LR  L +G GNFGS DGD  AA RYTE RL   A  LL
Sbjct: 1   YGAMVRMAQDFTLRYPLNDGIGNFGSRDGDGAAAMRYTEARLTPIAELLL 50


>gi|313638139|gb|EFS03398.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 296

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 9/177 (5%)

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQARGKALINILS-LNQ 626
           + M++ D    +  +++  S+L F+S G F+Y+  V  LP    +  G  + ++ S L+ 
Sbjct: 9   LAMKEADHAIFIKKMNSLESLLLFTSKGNFIYR-PVHELPDIRWKNLGDHVSHLASDLSA 67

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEIL 685
           GE I +++  P        L+V   TK+G  +++ ++++  Q      +A+KL   DE+L
Sbjct: 68  GEEIRSVIDIPTFTEEHRFLFV---TKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELL 124

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +V       DI L TK G  +R+PI+ I   +G  + GV+ I+L + D+V+   IVL
Sbjct: 125 NVHLIDGTEDIFLATKNGYGLRYPITEIPE-SGARTAGVKAINLKQDDKVVG-GIVL 179


>gi|133853668|gb|ABO39038.1| GyrA [Brucella abortus]
          Length = 37

 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+ +IYDAL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDVSIYDALVRMAQDFSMRDPLI 37


>gi|75992958|gb|ABA33682.1| GyrA-like protein [Haemophilus parasuis]
          Length = 52

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           ++S  GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L
Sbjct: 1   SLSLAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTIL 50


>gi|49425337|gb|AAT66029.1| DNA topoisomerase IV subunit A [Corynebacterium amycolatum]
          Length = 47

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 36/47 (76%), Gaps = 1/47 (2%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           G+ ++Y+A+ R++QDW LR +LIE  GN GS+D D PAA RYTE +L
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDND-PAAMRYTEAKL 46


>gi|133853699|gb|ABO39039.1| GyrA [Brucella abortus]
          Length = 37

 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IYDAL RMA D+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYDALVRMAXDFSMRDPLI 37


>gi|939957|emb|CAA51386.1| gyrA [Mycobacterium tuberculosis H37Rv]
          Length = 36

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IYD+L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|170783860|gb|ACB37404.1| DNA gyrase subunit A [Spiroplasma eriocheiris]
 gi|170783863|gb|ACB37406.1| DNA gyrase subunit A [Spiroplasma sp. CRAYFISH]
 gi|170783866|gb|ACB37408.1| DNA gyrase subunit A [Spiroplasma sp. SHRIMP]
          Length = 68

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          S++++       ++ D M++ +  YA  +I  RA+PD+RDGLKPV RRILF M ++ + +
Sbjct: 2  SNQKQTDNELVYTLNDIMEDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 68 NKKYVKC 74
          N  Y K 
Sbjct: 62 NSSYKKS 68


>gi|133853638|gb|ABO39037.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 58.2 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IY AL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYYALVRMAQDFSMRDPLI 37


>gi|85376453|gb|ABC70469.1| DNA topoisomerase IV subunit A [Listonella anguillarum]
          Length = 49

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
           KYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 1   KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 49


>gi|321470330|gb|EFX81307.1| hypothetical protein DAPPUDRAFT_317722 [Daphnia pulex]
          Length = 591

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 140/358 (39%), Gaps = 54/358 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALA 98
            +IP + DGL+P  R++LF   +     +K  V+  +++G V     +  G A++   + 
Sbjct: 5   HSIPSVMDGLRPTQRKVLFTCFKRN---DKDKVEVIKLAGSVAADSAYREGEASLMGTII 61

Query: 99  RMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLL----DDLGKDT 150
            +AQD+  S  L L+   G FG+    G   A+ RY    L + A F+     D L K  
Sbjct: 62  GLAQDFVGSNNLNLLVPIGEFGTRHEGGKDAASSRYLSTVLSELARFIFHPSDDPLLKHQ 121

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D     +     P++     P +L+NG  GI  G   +    N   +VD     +D   
Sbjct: 122 IDSNEEIEPESYVPII-----PMILINGTSGIGTGGMIDFLKFNPRHIVDFLKQKLDG-- 174

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGI-----KNAYATGRGSIVIRGVSHIEKTSGDREQ 265
                     + P  P    + G TG       N Y T  G+  +   + +E        
Sbjct: 175 ----------KQP-LPINLWLKGFTGKIEGSGDNQY-TSSGNYAVLSSTQVE-------- 214

Query: 266 IVVTEIPYQV----NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
             +TE+P+ V     K +++EK+     E   + I D ++       +  + +       
Sbjct: 215 --ITELPFGVWTHNYKISVIEKLLRGSEEMSPL-ITDFQEHHTGNTVKFTVTMSEAKMRQ 271

Query: 322 VILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
                LY+   LQS   +  + L   +G     ++   IL+ F   R ++  +R  Y 
Sbjct: 272 AKDEGLYKAFQLQSTHYITSMVLCDPSGSPKIYYSYQQILEDFYPVRLKLYEKRKNYF 329


>gi|541460|pir||S41421 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium smegmatis (fragment)
 gi|629195|pir||S43042 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium avium (fragment)
 gi|452278|emb|CAA54443.1| DNA gyrase subunit A [Mycobacterium smegmatis]
          Length = 36

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 545 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 601 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTR-LLCHPSDDPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYSPIIPMVLVNGAEGIGTGW 692


>gi|297845356|ref|XP_002890559.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336401|gb|EFH66818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 59

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII-RGPDFPTGAVILG 233
           MATNIP HNLGE+V+   A+I NP+  L  L+E +   PDFPTG  I+G
Sbjct: 1   MATNIPPHNLGELVNVLCALIHNPEATLQELLEYMPPAPDFPTGGTIMG 49


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 562 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 617

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 618 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTR-LLCHPSDDPLLK 676

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 677 RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 709


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 545 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 601 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTR-LLCHPSDDPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 545 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 601 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTR-LLCHPSDDPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 533 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 588

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 589 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTR-LLCHPSDDPLLK 647

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 648 RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 680


>gi|48429402|gb|AAT42469.1| ParC [Escherichia coli B]
          Length = 166

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 31/169 (18%)

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H+L GL +A  N+DEV+ IIR    P+ A   LM R                      
Sbjct: 4   RLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR---------------------- 38

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K
Sbjct: 39  ----FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 94

Query: 503 QELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +EL +        RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 95  KELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 143


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 545 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSLSSTI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 601 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIYTEIAPLTR-LLCHPSDDPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|170783857|gb|ACB37402.1| DNA gyrase subunit A [Spiroplasma mirum]
          Length = 68

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          S++++       ++ D M + +  YA  +I  RA+PD+RDGLKPV RRILF M ++ + +
Sbjct: 2  SNQKQTDNELVYTLNDIMDDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 68 NKKYVK 73
          N  Y K
Sbjct: 62 NSSYKK 67


>gi|37542701|gb|AAM13689.1| DNA gyrase [Mycobacterium celatum]
          Length = 147

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 8/111 (7%)

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI-AMKL 678
           N  +    ERI  ++     E +    Y+V AT++G V++ KL+DF   NRSG I A+ L
Sbjct: 40  NWWAFKPEERIAQVIQIRSYEDA---PYLVLATRNGLVKKTKLTDF-DSNRSGGIVAINL 95

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727
              DE++    C+ ++D+LL +  GQ +RF  +  A+R   GR + GV+G+
Sbjct: 96  RDGDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPM-GRATSGVQGM 145


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 554 RSIPSVADGLKPGQRKVIWGCFKRNL---KKEIKVAQLVGYISEHAAYH-HGEASLAATI 609

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +AQ++    ++ LL+  GQ  +G+ D  G   A+ RY    +      +      D +
Sbjct: 610 INLAQNYVGSNNINLLMPNGQ--YGTRDQGGKDHASPRYIFTEVSPLTRMICHP-ADDPL 666

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
             R   D    EP       P VLVNG  GI  G 
Sbjct: 667 LKRQTDDNLLVEPEWYMPILPLVLVNGADGIGTGW 701


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 588 RSIPSVADGLKPGQRKVIWGCFKRNL---KKEIKVAQLVGYISEHATYH-HGEASLAATI 643

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +AQ++    ++ LL+  GQ  +G+ D  G   A+ RY    +      +      D +
Sbjct: 644 INLAQNYVGSNNINLLMPNGQ--YGTRDQGGKDHASPRYIFTEVSPLTRMICHP-ADDPL 700

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
             R   D    EP       P VLVNG  GI  G 
Sbjct: 701 LKRQTDDNLLVEPEWYMPILPLVLVNGADGIGTGW 735


>gi|32481438|gb|AAP84065.1| gyrase [Enterococcus casseliflavus]
          Length = 39

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
          L+GM ++GV  +K + K ARI G+VMGKYHPHG++AIY+
Sbjct: 1  LYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYE 39


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 23/159 (14%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG A++   +
Sbjct: 405 RSIPSVADGLKPGQRKVIWGCFKRNL---KKEIKVAQLVGYISEHAAYH-HGEASLAATI 460

Query: 98  ARMAQDW----SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLL----DDLG 147
             +AQ++    ++ LL+  GQ  +G+ D  G   A+ RY    +      +     D L 
Sbjct: 461 INLAQNYVGSNNINLLMPNGQ--YGTRDQGGKDHASPRYIFTEVSPLTRMICHPEDDPLL 518

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           K   D     D    EP       P VLVNG  GI  G 
Sbjct: 519 KRQTD-----DNLLVEPEWYMPILPLVLVNGADGIGTGW 552


>gi|6166255|gb|AAF04746.1| DNA gyrase subunit A [Bacteroides fragilis]
          Length = 52

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+          +SLR +L++G
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVLQHHRPHGAAFSLRYMLVDG 52


>gi|289803041|ref|ZP_06533670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 92

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 40/53 (75%)

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E
Sbjct: 3   VDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAE 55


>gi|452282|emb|CAA54444.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  +    +
Sbjct: 545 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGEMSSSSTI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L+   G +G+ D  G   A+ RY    +      LL     D +  
Sbjct: 601 VNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHASPRYIFTEIAPLTR-LLCHPADDPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VLVNG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|284052889|ref|ZP_06383099.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 350

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 146/392 (37%), Gaps = 101/392 (25%)

Query: 504 ELLSVKDELDTPRRTRIVEGLL-----------------DMEDEDCIVR------EDMVV 540
           EL S+K     PRRTRIV                         E  I+R      E+ +V
Sbjct: 1   ELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETLV 60

Query: 541 TVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            ++  GYV+RV P ++ R Q R       +    +DF    ++ +T  +++  + +G  Y
Sbjct: 61  EMTLRGYVRRVTPHNLSRPQSREDITIEAI----DDFPVTSYLTTTAETLVIINRMGKAY 116

Query: 600 KEKVWRLPIGSPQARGKALINILS-------------------LNQGERITTIMPFPE-- 638
              V  +P  S ++RG  LI +LS                   L  G + + + P  +  
Sbjct: 117 PLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDAD 176

Query: 639 --DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
             + +  +   ++  +  G ++R   +DF+ ++  G   MKL   DE+         + +
Sbjct: 177 QRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQV 236

Query: 697 LLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L T  G+ +R  I+A ++   GR + G     L K +Q++   I L +  +        
Sbjct: 237 VLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVG-CITLSSTGE-------- 287

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                  L  +FIL VSE+G+ KR S  
Sbjct: 288 ---------------------------------------LNNKFILLVSEQGYFKRISLQ 308

Query: 816 DFRISNRSGKGIRATDVSKINEIG-ALVAVFP 846
             + S R G G +       N+    LVA  P
Sbjct: 309 SLQRSRRGGIGTQMLQFHSRNDACRGLVATTP 340


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 132/315 (41%), Gaps = 65/315 (20%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DG KP  R+IL+G  +  +   +  +K ++++G +     YH HG+ ++  ++
Sbjct: 740 RSIPSMLDGFKPSQRKILYGCYKRNL---RSEIKVSQLAGYIGEHSAYH-HGDQSLIQSI 795

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             +AQD+  S  L L++  G FGS         R    +   AA ++  DL K T   + 
Sbjct: 796 IGLAQDFVGSNNLNLLQPIGGFGS---------RAQGGKDASAARYIFTDLSKIT---KK 843

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+          C            GI  G +TNIP  N  ++V     ++D    +++ 
Sbjct: 844 NFS---------CQ-----------GIGTGWSTNIPPFNPVDIVANIRRLMDGQ--EMEE 881

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP--- 272
           ++   RG                N   T   +   R   +IE+   D E I +TEIP   
Sbjct: 882 MIPWYRG---------------WNGSITKISADKFRMEGNIEQI--DDETIEITEIPAKT 924

Query: 273 YQVN-KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           + +N K  +L  IA    EK+   I D+ ++       V+   K      + +    R+ 
Sbjct: 925 WTINMKEFLLNGIAG--SEKQKSWIKDMEEQHGMDLKFVITLTKEEMKKSLQMGLKERFK 982

Query: 332 SLQSLFSVNMVALNG 346
            + ++   NMVA + 
Sbjct: 983 LITTINVGNMVAFDA 997


>gi|30100900|gb|AAP21087.1| GyrA [Mycobacterium tuberculosis]
          Length = 36

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IY +L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYHSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++G  +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 545 RSIPSVADGLKPGQRKVIWGCFKRKL---KKEIKVAQLVGYISEHAAYH-HGETSLAATI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  + L++  G +G+ D  G   A+ RY    +      +      D +  
Sbjct: 601 VNLAQNYVGSNNINLLKPNGQYGTRDQGGKDHASPRYIYTEVMPLTRMICHP-ADDPLLK 659

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           R   D    EP       P VL+NG  GI  G 
Sbjct: 660 RQTDDNLLVEPEWYMPVVPLVLINGAEGIGTGW 692


>gi|32481442|gb|AAP84067.1| topoisomerase [Enterococcus casseliflavus]
          Length = 38

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 30/38 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           A+  G +MG +HPHG+++IY+A+ RM+QDW LR + IE
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQIXIE 38


>gi|452280|emb|CAA54445.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IY  L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|167946760|ref|ZP_02533834.1| DNA gyrase, A subunit [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 73

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           +TGL +D I  E   L  +I   LDILSS  RL+ +I+ ELL+++++ + PRRT+I++  
Sbjct: 1   MTGLEQDKIIKEYEELLEKIANLLDILSSSFRLMEVIRDELLAIREQYNDPRRTQIIQDR 60

Query: 525 LDMEDEDCI 533
           LD+  ED I
Sbjct: 61  LDLTLEDLI 69


>gi|10444202|gb|AAG17772.1| topoisomerase IV subunit C [Methylobacterium extorquens AM1]
 gi|10444204|gb|AAG17773.1| topoisomerase IV subunit C [Methylophilus methylotrophus]
 gi|10444206|gb|AAG17774.1| topoisomerase IV subunit C [Methylobacillus sp. SK1]
 gi|10444208|gb|AAG17775.1| topoisomerase IV subunit C [Methylovorus sp. SS1]
          Length = 40

 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQ
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQ 40


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 15/139 (10%)

Query: 16  ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +T + I+D +    + +++  N+   R+IP + DGLKP  R++++   +  +   K  +K
Sbjct: 627 LTEIPISDFINKELILFSLADNI---RSIPSVLDGLKPGQRKVIYACFKRNL---KSEIK 680

Query: 74  CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A++ G V     YH HG  ++Y  +  +AQD+  S  + L++  G FG+    G   AA
Sbjct: 681 VAQLGGYVSEHTGYH-HGEPSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRATGGKDSAA 739

Query: 128 ERYTECRLQKAAHFLLDDL 146
            RY    L K    + + L
Sbjct: 740 PRYIFTELNKITRKIFNSL 758


>gi|167949304|ref|ZP_02536378.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 105

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/115 (35%), Positives = 53/115 (46%), Gaps = 29/115 (25%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR +Y L++  DR H+L GL IA  N+DEV+ IIR+  +P+    ELM+R        
Sbjct: 1   MTRRLQYRLDQVLDRLHLLEGLMIAYLNIDEVIAIIRYEDDPKA---ELMRR-------- 49

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                               LSE Q  AIL LRL  L  L    IR E + L  E
Sbjct: 50  ------------------FALSERQAEAILNLRLRHLAKLEEFKIRGEQDELEQE 86


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 25/160 (15%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R +++   +  +   KK +K A++ G V     YH HG A++   +
Sbjct: 549 RSIPSVADGLKPGQREVIWACFKRKL---KKEIKVAQLVGYVSEHAAYH-HGEASLAATI 604

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTEC---RLQKAAHFLLDD----L 146
             +AQD+  S  + L+   G +G+ D  G   AA RY       L +A +   DD    +
Sbjct: 605 VSLAQDFVGSNNVNLLSPNGQYGTRDQGGKDHAAPRYIFTDLPPLTRALYHPSDDPLLAV 664

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            KD        D    EP       P VLVNG  GI  G 
Sbjct: 665 QKD--------DNLVIEPEYYVPVIPLVLVNGAEGIGTGW 696


>gi|321473423|gb|EFX84390.1| hypothetical protein DAPPUDRAFT_30330 [Daphnia pulex]
          Length = 547

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 145/377 (38%), Gaps = 36/377 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VS  D ++   + +  N+   R++P + DG     R+ L+  ++   +      +
Sbjct: 80  KDIKEVSYHDFVKKDLIRFR-NMEYVRSVPSIMDGFNERQRKTLYTCIKRDYKEEINVAQ 138

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAER 129
            A    E    Y P     +   +  +AQD+    ++ LL+  GQ     ++     +  
Sbjct: 139 LAVSVAENCAYYQPD---LLIGTITGLAQDFVGSNNINLLIPNGQFASRHLESKDVGSPD 195

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y    + K    +        + +R + + S  EP       P VLVNG  GI  G  T 
Sbjct: 196 YIFTMMSKITRKIFHPRDDPLLKYRTDGNQSI-EPEYFAPIIPMVLVNGANGIGTGFKTK 254

Query: 190 IPTHNLGEVVDGCVAVID----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP  N  E+++    +++    NP   +D   +  RG         + R    N   +  
Sbjct: 255 IPKQNPREIIENLKRMLNGEKPNP---MDPWFKGYRG--------TVERIDQLNFVIS-- 301

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +   + IE T       +  ++P +  K ++LEK+     E   + I D ++    
Sbjct: 302 GELAVLSPTTIEITE------LPVDVPTENYKKSVLEKLLCGSEECPPI-ITDYQEHHTD 354

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFV 362
              R V+ +       V     +R   LQS++S+  + L   NG      ++  I+  F 
Sbjct: 355 NNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVDDIMNEFY 414

Query: 363 AFREEVVVRRTKYLLNK 379
             R E+  +R  Y   K
Sbjct: 415 EVRLELYRKRRDYFSGK 431


>gi|94502465|ref|ZP_01308887.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94450978|gb|EAT13981.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 66

 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P+VL    P++L  G  GIAVGMAT++P  ++ E  +   +  D  +I ++ LM+ I+ P
Sbjct: 2   PLVLPTCIPHLLFYGSSGIAVGMATHMPPPHIVESFEAICSYFDYKNITIEELMKYIKAP 61

Query: 224 DFPTG 228
            FP+G
Sbjct: 62  AFPSG 66


>gi|452284|emb|CAA54446.1| DNA gyrase [Mycobacterium smegmatis str. MC2 155]
          Length = 36

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IY  L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DVSIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|328697364|ref|XP_003240317.1| PREDICTED: DNA topoisomerase 2-like [Acyrthosiphon pisum]
          Length = 333

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 68  NKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
           +K+ +K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    
Sbjct: 18  DKREIKVAQLAGSVAEHSAYH-HGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGTRLQG 76

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G   A+ RY    L      +        + +  + D    EPV      P VLVNG  G
Sbjct: 77  GKDAASPRYIFTMLSPLTRLIFHPHDDPLLTYLRD-DNQKIEPVWYMPIIPMVLVNGAEG 135

Query: 182 IAVGMATNIPTHNLGEVV 199
           I  G  T IP HN  EV+
Sbjct: 136 IGTGWMTKIPNHNPREVI 153


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 145/377 (38%), Gaps = 36/377 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VS  D ++   + +  N+   R++P + DG     R+ L+  ++   +      +
Sbjct: 263 KDIKEVSYHDFVKKDLIRFR-NMEYVRSVPSIMDGFNERQRKTLYTCIKRDYKEEINVAQ 321

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAER 129
            A    E    Y P     +   +  +AQD+    ++ LL+  GQ     ++     +  
Sbjct: 322 LAVSVAENCAYYQPD---LLIGTITGLAQDFVGSNNINLLIPNGQFASRHLESKDVGSPD 378

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y    + K    +        + +R + + S  EP       P VLVNG  GI  G  T 
Sbjct: 379 YIFTMMSKITRKIFHPRDDPLLKYRTDGNQSI-EPEYFAPIIPMVLVNGANGIGTGFKTK 437

Query: 190 IPTHNLGEVVDGCVAVID----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP  N  E+++    +++    NP   +D   +  RG         + R    N   +  
Sbjct: 438 IPKQNPREIIENLKRMLNGEKPNP---MDPWFKGYRG--------TVERIDQLNFVIS-- 484

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +   + IE T       +  ++P +  K ++LEK+     E   + I D ++    
Sbjct: 485 GELAVLSPTTIEITE------LPVDVPTENYKKSVLEKLLCGSEECPPI-ITDYQEHHTD 537

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFV 362
              R V+ +       V     +R   LQS++S+  + L   NG      ++  I+  F 
Sbjct: 538 NNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVDDIMNEFY 597

Query: 363 AFREEVVVRRTKYLLNK 379
             R E+  +R  Y   K
Sbjct: 598 EVRLELYRKRRDYFSGK 614


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1089

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY---VKCARISGEVM- 82
           N  L +A   IL R+IP L DG +   R++++ + +   E N  +   +K  +++  V  
Sbjct: 639 NEELIFAAQAILERSIPSLIDGFRLAQRKVVYSLFKREQEANVNFEEKIKVTQLASYVSE 698

Query: 83  GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKA 138
              H H   ++   + RMAQ +  S  + L++    FGS    G      RY    L   
Sbjct: 699 HAAHHHCERSLSRTIIRMAQTFVGSNNVNLLQPFCLFGSRASGGTHDVDARYIHTLLSSI 758

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              L+     D +++  N  G  + P       P VLVNG   + +G    IP+++
Sbjct: 759 TRLLIHKDDDDILEYH-NVFGRKRHPECFLPIMPMVLVNGSQSVGMGWNRFIPSYD 813


>gi|16923696|gb|AAL31544.1|AF435074_9 DNA gyrase A [Corynebacterium glutamicum]
          Length = 140

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           +F+L  +  G+GKRT   D+    R G G+         + G LV+   V ++D+I  ++
Sbjct: 1   EFLLVATSGGYGKRTPLEDYSTQGRGGLGV--VTFKYTPKRGRLVSAIAVEEDDEIFAIT 58

Query: 858 DKGTLIRVPVNEIRIASRATKGV 880
             G ++R  V +IR +SRAT GV
Sbjct: 59  SAGGVVRTEVKQIRPSSRATMGV 81


>gi|254168976|ref|ZP_04875815.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
 gi|197622082|gb|EDY34658.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
          Length = 153

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 58/203 (28%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           DI L TK G+ +RF    +RV  GR + GV GI L  GD+VIS                 
Sbjct: 9   DIFLFTKYGKAIRFSEDDVRVM-GRTARGVIGIKLQDGDEVIS----------------- 50

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                   S+VE             +  ++  V   G+GKRT  
Sbjct: 51  ------------------------SAVES------------EGPYVFAVLSSGYGKRTPI 74

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            ++R   R G G+R   +     + +L+      +ND+ +L++  G  IR+ + ++ +  
Sbjct: 75  GEYRRIRRGGMGVRNISIRNATVVKSLLT----TENDEALLLTKNGMSIRIKLRDVSVMG 130

Query: 875 RATKGVVIFSTAKDERVVSVERI 897
           R  +GV +      + VV+  ++
Sbjct: 131 RNARGVKLIKLDDGDEVVNAAKL 153



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILL 698
           ES    ++ V ++ +G  +R  + ++ +I R G     +  R+  +     T END  LL
Sbjct: 54  ESEGPYVFAVLSSGYG--KRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEALL 111

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
            TK G  +R  +  + V  GRN+ GV+ I L  GD+V++ A
Sbjct: 112 LTKNGMSIRIKLRDVSVM-GRNARGVKLIKLDDGDEVVNAA 151


>gi|156311443|ref|XP_001617785.1| hypothetical protein NEMVEDRAFT_v1g69871 [Nematostella vectensis]
 gi|156195794|gb|EDO25685.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +VV  TK G V++ KL DF +  ++G  A+ +   DE+L  +    +N I++  K G+ +
Sbjct: 4   FVVLCTKKGIVKKTKLEDFSRPRQTGVNAITIQEGDELLEAKLTDGDNYIMMAVKSGRAI 63

Query: 707 RFPISAIRVFAGRNSVGVRGISLA 730
            F  S +R   GR ++GV GI L+
Sbjct: 64  CFEESKVRP-TGRGAIGVNGIELS 86


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 136/358 (37%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGVKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             P    DG   EP       P  ++  G   + G         L +++    A +D  + 
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNP 881

Query: 212  DLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L   I+      P  P+     G       Y    G+ VI         S  R  I
Sbjct: 882  KHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVI---------SEQRNII 932

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY------------RVVIEL 314
             +TE+P +V   A +E I +     R+  I ++ D S  +              R+V E 
Sbjct: 933  TITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEF 990

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            K     D I N L     L S   +N V   G   E  T   IL A++ +R E+  +R
Sbjct: 991  KETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNTYYEILYAWLPYRRELYQKR 1046


>gi|10444196|gb|AAG17769.1| gyrase subunit A [Methylobacterium extorquens AM1]
 gi|10444198|gb|AAG17770.1| gyrase subunit A [Methylophilus methylotrophus]
 gi|10444200|gb|AAG17771.1| gyrase subunit A [Methylobacillus sp. SK1]
          Length = 33

 Score = 52.4 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 28/33 (84%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           +GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQ
Sbjct: 1   IGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQ 33


>gi|309806045|ref|ZP_07700068.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167564|gb|EFO69720.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
          Length = 330

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 17/214 (7%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+ V VS  GY+KR  L  Y++      G     +   D V     VST +++  F++ 
Sbjct: 5   EDVRVLVSANGYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNK 59

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +    V+ L     +  G+ L   + L   ERI ++       S   +L  +  T  G
Sbjct: 60  GNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLIFLITTNDG 116

Query: 656 NVRRNKLSDFIQINRSGK----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRF 708
            +++  LSD +Q  R+ K    + +KL D    +L VE      +N+ILL T     +RF
Sbjct: 117 YIKQVALSD-LQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSGSDNEILLVTNSAYALRF 175

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++ + +   R + GV+ I+L   D  +  AI  
Sbjct: 176 DVNEVPLVGPR-AAGVKSINLKNDDDYVVSAITF 208


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 138/358 (38%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGVKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             P    DG   EP       P  ++  G   + G         L +++    A +D  + 
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNP 881

Query: 212  DLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L   I+      P  P+     G       Y    G+ VI         S  R  I
Sbjct: 882  KHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVI---------SEQRNII 932

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-------- 318
             +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK  +        
Sbjct: 933  TITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIMEEF 990

Query: 319  ----SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                  D I N L     L S   +N V   G   E  T   IL A++ +R E+  +R
Sbjct: 991  KCTEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNTYYEILYAWLPYRRELYQKR 1046


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 138/358 (38%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGVKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             P    DG   EP       P  ++  G   + G         L +++    A +D  + 
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNP 881

Query: 212  DLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L   I+      P  P+     G       Y    G+ VI         S  R  I
Sbjct: 882  KHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVI---------SEQRNII 932

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-------- 318
             +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK  +        
Sbjct: 933  TITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIMEEF 990

Query: 319  ----SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                  D I N L     L S   +N V   G   E  T   IL A++ +R E+  +R
Sbjct: 991  KCTEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNTYYEILYAWLPYRRELYQKR 1046


>gi|83416395|gb|ABC18233.1| DNA gyrase subunit A [bacterium Re#58]
          Length = 36

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 28/35 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDALAR+AQ WS+R+ L++  GNFGS   DP
Sbjct: 1   DSSIYDALARLAQPWSMRMPLVDSNGNFGSPGNDP 35


>gi|226327146|ref|ZP_03802664.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
 gi|225204364|gb|EEG86718.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 34/46 (73%)

Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+
Sbjct: 19 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAKF 64


>gi|4140496|gb|AAD04083.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 42

 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 34/42 (80%)

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           L+ EK +  I+D+RDESD+ G RVV+ELK+  S++V++N+LY
Sbjct: 1   LINEKTLTGISDVRDESDKDGIRVVLELKKAESSEVVINRLY 42


>gi|309807647|ref|ZP_07701589.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169113|gb|EFO71189.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
          Length = 323

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 17/214 (7%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+ V VS  GY+KR  L  Y++      G     +   D V     VST +++  F++ 
Sbjct: 5   EDVRVLVSANGYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNK 59

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +    V+ L     +  G+ L   + L   ERI ++       S   +L  +  T  G
Sbjct: 60  GNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLIFLITTNDG 116

Query: 656 NVRRNKLSDFIQINRSGK----IAMKL-DSRDEILSVETCT--QENDILLTTKLGQCVRF 708
            +++  LSD +Q  R+ K    + +KL D    +L VE      +N+ILL T     +RF
Sbjct: 117 YIKQVALSD-LQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRF 175

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++ + +   R + GV+ I+L   D  +  AI  
Sbjct: 176 DVNEVPLVGPR-AAGVKSINLKNDDDYVVSAITF 208


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 144/358 (40%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGLKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID--NP 209
             P    DG   EP       P  ++  G   + G         L +++    A ID  NP
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYIDKNNP 881

Query: 210  DIDL-----DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
              +L     D  + ++  P  P+     G       Y    G+ V+         S  R 
Sbjct: 882  KHELLHYAIDHKITVL--PLRPSNYNFKGHLKRFGQYYYSYGTYVV---------SEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI- 323
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK  + + +I 
Sbjct: 931  MITITELPLRVPTVAYIESIKK--SSNRMAFIEEIVDYSSSETIEILVKLKPNSLSRIIE 988

Query: 324  -------LNQLYRYTSLQSLF--SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    N +  +  L++     +N V   G   E  +   IL A++ +R ++  +R
Sbjct: 989  EFKETEEQNSIENFLRLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRDLYQKR 1046


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 11/153 (7%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++++   +  +   KK +K A++ G +     YH HG  ++   +
Sbjct: 545 RSIPSVADGLKPGQRKVMWACFKRKL---KKEIKVAQLVGYIGEQAAYH-HGEVSLAQTI 600

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +AQ++  S  L L++ +G +G+ +  G   A+ RY   +    +  + +      ++ 
Sbjct: 601 VNLAQNFVGSNNLNLLDPRGQYGTREQGGKNHASPRYIFTQPMSISRVIFNPADDALLNA 660

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           + + D    EP       P  L+NG  GI  G 
Sbjct: 661 QKD-DNMVIEPEWYMPIVPMTLINGAEGIGTGW 692


>gi|83416365|gb|ABC18218.1| DNA gyrase subunit A [bacterium Kar#17]
          Length = 36

 Score = 50.1 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + +IYDAL R+AQ WS+RL L++  GNFGS   DP
Sbjct: 1   DTSIYDALVRLAQPWSMRLPLVDSNGNFGSPGNDP 35


>gi|83416345|gb|ABC18208.1| DNA gyrase subunit A [bacterium BA#39]
          Length = 36

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 1   DSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDP 35


>gi|227542700|ref|ZP_03972749.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181522|gb|EEI62494.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 79

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LELRL RLTGL  + + +E   +   I E + IL++ +RL+ +I++EL +VK E    RR
Sbjct: 1   LELRLHRLTGLEHEKLLSEYQEILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARR 60

Query: 518 TRIVEGLLDMEDEDCIVRE 536
           T IV   +D+   D I  E
Sbjct: 61  TEIVASQVDLTIADLITEE 79


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 11/124 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK   +VS +D +    + Y+ N    R+IP++ DG KP  R++L+  ++     +K+ V
Sbjct: 677 EKDTRTVSFSDFINVELVLYS-NYDNVRSIPNMIDGFKPGQRKVLYTCLKRN---DKREV 732

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
           K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 733 KVAQLAGSVAEHSAYH-HGEVSLMSTIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 791

Query: 127 AERY 130
           + RY
Sbjct: 792 SPRY 795


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
            Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 137/358 (38%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 704  RQIPNFLDGMTRARRKILAGGLKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 762

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 763  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 820

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID--NP 209
             P    DG   EP       P  ++  G   + G         L +++    A +D  NP
Sbjct: 821  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNP 880

Query: 210  DIDLDALM---EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              +L       +I   P  P+     G       Y    G+ V+         S  R  I
Sbjct: 881  KHELLHYAIERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVV---------SEQRNII 931

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY------------RVVIEL 314
             +TE+P +V   A +E I +     R+  I ++ D S  +              R+V E 
Sbjct: 932  TITELPLRVPTVAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEF 989

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            K     D I N L     L S   +N V   G   E  +   IL A++ +R +V  +R
Sbjct: 990  KETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKR 1045


>gi|83416359|gb|ABC18215.1| DNA gyrase subunit A [bacterium Cu#20A]
          Length = 36

 Score = 49.7 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 1   DSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDP 35


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 137/358 (38%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 704  RQIPNFLDGMTRARRKILAGGLKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 762

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 763  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 820

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID--NP 209
             P    DG   EP       P  ++  G   + G         L +++    A +D  NP
Sbjct: 821  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNP 880

Query: 210  DIDLDALM---EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              +L       +I   P  P+     G       Y    G+ V+         S  R  I
Sbjct: 881  KHELLHYAIERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVV---------SEQRNII 931

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY------------RVVIEL 314
             +TE+P +V   A +E I +     R+  I ++ D S  +              R+V E 
Sbjct: 932  TITELPLRVPTVAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEF 989

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            K     D I N L     L S   +N V   G   E  +   IL A++ +R +V  +R
Sbjct: 990  KETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKR 1045


>gi|242032529|ref|XP_002463659.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
 gi|241917513|gb|EER90657.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
          Length = 188

 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 11/97 (11%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN------ 848
           L   ++L V+E G GKR     FR+ N +  G++     K+ E   L AVF         
Sbjct: 71  LSPPWLLFVAENGIGKRVPLNAFRLLNFNAVGLQGY---KLPEDCRLAAVFIAGLSLTED 127

Query: 849 --DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              ++Q++LVS  GT+ R+ V +I I SR ++GV++ 
Sbjct: 128 GESDEQVVLVSQSGTVNRIKVKDISIQSRHSRGVILM 164


>gi|83416335|gb|ABC18203.1| DNA gyrase subunit A [bacterium Ad#39A]
 gi|83416337|gb|ABC18204.1| DNA gyrase subunit A [bacterium Ad#39B]
 gi|83416339|gb|ABC18205.1| DNA gyrase subunit A [bacterium Ad#43]
 gi|83416341|gb|ABC18206.1| DNA gyrase subunit A [bacterium Ad#46]
 gi|83416343|gb|ABC18207.1| DNA gyrase subunit A [bacterium BA#3]
 gi|83416347|gb|ABC18209.1| DNA gyrase subunit A [bacterium CP#9]
 gi|83416349|gb|ABC18210.1| DNA gyrase subunit A [bacterium CP#27]
 gi|83416351|gb|ABC18211.1| DNA gyrase subunit A [bacterium CP#41]
 gi|83416353|gb|ABC18212.1| DNA gyrase subunit A [bacterium CP#58]
 gi|83416355|gb|ABC18213.1| DNA gyrase subunit A [bacterium CP#65]
 gi|83416357|gb|ABC18214.1| DNA gyrase subunit A [bacterium CP#71]
 gi|83416363|gb|ABC18217.1| DNA gyrase subunit A [bacterium Den#20]
 gi|83416367|gb|ABC18219.1| DNA gyrase subunit A [bacterium KC1#4]
 gi|83416369|gb|ABC18220.1| DNA gyrase subunit A [bacterium KC1#5]
 gi|83416371|gb|ABC18221.1| DNA gyrase subunit A [bacterium KC1#8]
 gi|83416373|gb|ABC18222.1| DNA gyrase subunit A [bacterium KC1#11]
 gi|83416375|gb|ABC18223.1| DNA gyrase subunit A [bacterium PP#26A]
 gi|83416377|gb|ABC18224.1| DNA gyrase subunit A [bacterium PP#26B]
 gi|83416379|gb|ABC18225.1| DNA gyrase subunit A [bacterium PP#47]
 gi|83416381|gb|ABC18226.1| DNA gyrase subunit A [bacterium PP#50]
 gi|83416383|gb|ABC18227.1| DNA gyrase subunit A [bacterium PP#59]
 gi|83416385|gb|ABC18228.1| DNA gyrase subunit A [bacterium PP#67]
 gi|83416389|gb|ABC18230.1| DNA gyrase subunit A [bacterium Re#27]
 gi|83416393|gb|ABC18232.1| DNA gyrase subunit A [bacterium Re#38A]
 gi|83416397|gb|ABC18234.1| DNA gyrase subunit A [bacterium Re#60]
 gi|83416401|gb|ABC18236.1| DNA gyrase subunit A [bacterium Re#70B]
 gi|83416403|gb|ABC18237.1| DNA gyrase subunit A [bacterium Va#12]
 gi|83416405|gb|ABC18238.1| DNA gyrase subunit A [bacterium Va#23]
 gi|83416407|gb|ABC18239.1| DNA gyrase subunit A [bacterium WAT#4]
          Length = 36

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDP 35


>gi|506869|dbj|BAA03133.1| DNA topoisomerase IIB [Rattus norvegicus]
          Length = 214

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 33/221 (14%)

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
           A+++G V  M  YH HG  A+   +  +AQ++  S  + L++  G FG+    G   A+ 
Sbjct: 1   AQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMA 187
           RY    L   A  L   +  + + F   YD + + EP       P VL+NG  GI  G A
Sbjct: 60  RYIFTMLSSLARLLFPAVDDNLLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWA 117

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
             +P ++  E+VD    +++   +D   ++     P++      +   G +N YA     
Sbjct: 118 CKLPNYDAREIVDNVRRMLEG--LDPHPML-----PNYKNFKGTIQELG-QNQYAVSGEI 169

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPY----QVNKAAMLEKI 284
            V+           DR  +  TE+P     QV K  +LE +
Sbjct: 170 FVV-----------DRNTVETTELPVRTWTQVYKEQVLEPM 199


>gi|409090|dbj|BAA03132.1| DNA topoisomerase IIA [Rattus norvegicus]
          Length = 214

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 10/140 (7%)

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
           A+++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ 
Sbjct: 1   AQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASP 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMA 187
           RY    L   A  L     KD    R  YD + + EP       P VL+NG  GI  G +
Sbjct: 60  RYIFTMLSPLARLLFPS--KDDHTLRFLYDDNQRVEPEWYILIIPMVLINGAEGIGTGWS 117

Query: 188 TNIPTHNLGEVVDGCVAVID 207
             IP  ++ EVV+    ++D
Sbjct: 118 CKIPNFDVREVVNNIRRLLD 137


>gi|157885972|emb|CAP09241.1| topoisomerase (DNA) II alpha [Danio rerio]
          Length = 810

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 127/320 (39%), Gaps = 50/320 (15%)

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + +  
Sbjct: 10  LAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKY-- 67

Query: 156 NYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           NYD + + EP       P VL NGG GI  G A+ IP +++ E+++    +++  +    
Sbjct: 68  NYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREIINNIHRMLNGEEP--- 124

Query: 215 ALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                   P  P+     G      KN Y    G + I   + IE          +TE+P
Sbjct: 125 -------LPMLPSYKGFKGTIDELAKNQYVNN-GEVAIIDSTTIE----------ITELP 166

Query: 273 YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            +       E + E++    EK    I D ++       R V+++      +     L++
Sbjct: 167 VKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGLHK 226

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAH 385
              LQ+L + N + L       F  +G LK + +     +E   +R   Y+L     R  
Sbjct: 227 VFKLQNLLTCNSMVL-------FDHVGSLKKYESVQDILKEFFELRMKYYVL-----RKD 274

Query: 386 VLVG-LAIAVANLDEVVRII 404
            LVG L    A L    R I
Sbjct: 275 WLVGMLGAESAKLSNQARFI 294


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R++LFG  +  ++   K  + A    E  G YH HG  ++   +  
Sbjct: 652 RSIPSVLDGLKPGQRKVLFGCFKRNLKSEIKVAQLAAYVSENTG-YH-HGEVSLVQTIIG 709

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +AQ++  S  + +++  G FGS    G   AA RY    L      + + L
Sbjct: 710 LAQNFVGSNNINILKPNGAFGSRATGGKDAAAARYIFTELNDITKAIFNPL 760


>gi|1419297|emb|CAA62576.1| gyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 91

 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 2/61 (3%)

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI    D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+  +E VD+ 
Sbjct: 2   VDDCDQIHDDHDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 59

Query: 907 E 907
           E
Sbjct: 60  E 60


>gi|83416361|gb|ABC18216.1| DNA gyrase subunit A [bacterium Cu#22]
          Length = 36

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + +IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 1   DTSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDP 35


>gi|83416333|gb|ABC18202.1| DNA gyrase subunit A [bacterium Ad#33]
          Length = 36

 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 1   DSSIYDALVRLAQPWSMRIPLVDSNGNFGSPGNDP 35


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           R+IP + DGLKP  R++LFG  +  ++   K  + A    E  G YH HG  ++   +  
Sbjct: 652 RSIPSVLDGLKPGQRKVLFGCFKRNLKSEIKVAQLAAYVSENTG-YH-HGEVSLVQTIIG 709

Query: 100 MAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +AQ++  S  + +++  G FGS    G   AA RY    L      + + L
Sbjct: 710 LAQNFVGSNNINILKPNGAFGSRATGGKDAAAARYIFTELNDITKAIFNPL 760


>gi|297180058|gb|ADI16283.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
          subunit [uncultured bacterium HF0010_16H03]
          Length = 89

 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
          ++S+    + SYL YA+ VIL RA+P++ DGLKPV RRI
Sbjct: 9  TISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRI 47


>gi|294463058|gb|ADE77067.1| unknown [Picea sitchensis]
          Length = 183

 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPV 847
           + Q   +   ++L VSE G+GKR     FRI+     G+    +   + + AL  V   +
Sbjct: 53  KSQGKTITAPWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRVAALFVVGLSL 112

Query: 848 NDN----DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +D+    +Q++LVS  G + R+ V  I I SR  KGV +       ++ SV  +  SE+
Sbjct: 113 SDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKGVRLMRLEHGGKIQSVSVVGPSEV 171



 Score = 38.1 bits (87), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 11/118 (9%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           LL  + +   +    ++ VS  GY KRVPLS +R       G  G  +  ED V  LF+V
Sbjct: 49  LLSSKSQGKTITAPWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRVAALFVV 108

Query: 584 STHTS--------VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
               S        V+  S  G V +  V  + I S  A+G   + ++ L  G +I ++
Sbjct: 109 GLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKG---VRLMRLEHGGKIQSV 163


>gi|229086163|ref|ZP_04218382.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
 gi|228697147|gb|EEL49913.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
          Length = 193

 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           GIRA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 63  GIRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 122

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E+V
Sbjct: 123 FKELKRNPYRIVGIEIVRDDELV 145


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGVKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             P    DG   EP       P  ++  G   + G         L +++    A +D  + 
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNP 881

Query: 212  DLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L   I+      P  P+     G       Y    G+  I         S  R  I
Sbjct: 882  KHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYDI---------SEQRNII 932

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY------------RVVIEL 314
             +TE+P +V   A +E I +     R+  I ++ D S  +              R+V E 
Sbjct: 933  TITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEF 990

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            K     D I N L     L S   +N V   G   E  +   IL A++ +R E+  +R
Sbjct: 991  KETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRELYQKR 1046


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGVKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             P    DG   EP       P  ++  G   + G         L +++    A +D  + 
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNP 881

Query: 212  DLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L   I+      P  P+     G       Y    G+  I         S  R  I
Sbjct: 882  KHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYDI---------SEQRNII 932

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY------------RVVIEL 314
             +TE+P +V   A +E I +     R+  I ++ D S  +              R+V E 
Sbjct: 933  TITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEF 990

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            K     D I N L     L S   +N V   G   E  +   IL A++ +R E+  +R
Sbjct: 991  KETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRELYQKR 1046


>gi|313103856|pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103857|pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103858|pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
          Length = 276

 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ ATK G V++  L++F +    G   +KL   DE++S+ +   E  ILL TK G+  R
Sbjct: 83  LLLATKKGYVKKIPLAEF-EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVAR 141

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           F +  +   +   + GV+GI L K D+   + I
Sbjct: 142 FSVREVPP-STPGARGVQGIKLEKNDETSGLRI 173



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 40/240 (16%)

Query: 477 LNSLGIEIKECLDILSSRSRLLGII-KQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +N L +   E L ++S+R R+  I   Q L   K  L + R  +IV            +R
Sbjct: 27  VNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIV---------GAFIR 76

Query: 536 EDM---VVTVSHLGYVKRVPLSV--YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           E     ++  +  GYVK++PL+   Y+AQ     G   + + + D V  +      T +L
Sbjct: 77  EKFGNRLLLATKKGYVKKIPLAEFEYKAQ-----GMPIIKLTEGDEVVSIASSVDETHIL 131

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS----WNN- 645
            F+  G V +  V  +P  +P ARG          QG ++        DE+S    WN  
Sbjct: 132 LFTKKGRVARFSVREVPPSTPGARG---------VQGIKLEK-----NDETSGLRIWNGE 177

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            Y++  T  G V++    +  + NR  K      ++D ++ +    +E ++L+TTK G+ 
Sbjct: 178 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 237


>gi|116489838|gb|ABJ98822.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 34

 Score = 47.8 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S
Sbjct: 2   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS 34


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 41/358 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALA 98
            R IP+  DG+    R+IL G ++     N +  K  +  G V    ++ HG+ ++  ++ 
Sbjct: 705  RQIPNFLDGMTRARRKILAGGVKCFAS-NNRERKVFQFGGYVADHMFYHHGDMSLNTSII 763

Query: 99   RMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            + AQ +   S    +  G G+FGS  + G    + RY   +L  A+ F+      +    
Sbjct: 764  KAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQL--ASEFIKTMFPAEDSWL 821

Query: 154  RPNY--DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             P    DG   EP       P  ++  G   + G         L +++    A +D  + 
Sbjct: 822  LPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKDNP 881

Query: 212  DLDALMEIIRG-----PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L   I+      P  P+     G       Y    G+  I         S  R  I
Sbjct: 882  KHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYDI---------SEQRNII 932

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY------------RVVIEL 314
             +TE+P +V   A +E I +     R+  I ++ D S  +              R+V E 
Sbjct: 933  TITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEF 990

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            K     D I N L     L S   +N V   G   E  +   IL A++ +R E+  +R
Sbjct: 991  KETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRELYQKR 1046


>gi|229025029|ref|ZP_04181458.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
 gi|228736364|gb|EEL86930.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
          Length = 193

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           G+RA  V  IN  E   + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VI
Sbjct: 63  GVRAAGVKAINLKEDDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 122

Query: 883 FSTAKDE--RVVSVERIRESEIV 903
           F   K    R+V +E +R+ E++
Sbjct: 123 FKELKRNPYRIVGIEIVRDDELI 145


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  +   K  +K A
Sbjct: 632 INEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKL---KSEIKVA 687

Query: 76  RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           +++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A R
Sbjct: 688 QLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGKDFSAAR 746

Query: 130 YTECRLQKAAHFLLDDL 146
           Y    L +    + + L
Sbjct: 747 YIFTELNEITRKIFNPL 763


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  +   K  +K A
Sbjct: 632 INEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKL---KSEIKVA 687

Query: 76  RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           +++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A R
Sbjct: 688 QLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGKDFSAAR 746

Query: 130 YTECRLQKAAHFLLDDL 146
           Y    L +    + + L
Sbjct: 747 YIFTELNEITRKIFNPL 763


>gi|313609053|gb|EFR84774.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 2/95 (2%)

Query: 649 VFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +F TK+G  +++ ++++  Q      +A+KL   DE+LSV       DI L TK G  +R
Sbjct: 19  LFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLR 78

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + ++ I   +G  + GV+ I+L + D VI   +++
Sbjct: 79  YAVAEIPE-SGARTAGVKAINLKQDDMVIGGVVLM 112


>gi|289809152|ref|ZP_06539781.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 34

 Score = 47.4 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
           NIP HNL EV++GC+A IDN DI ++ LME I
Sbjct: 2   NIPPHNLTEVINGCLAYIDNEDISIEGLMEHI 33


>gi|49296|emb|CAA78157.1| DNA Gyrase subunit A [Borrelia burgdorferi]
          Length = 96

 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVT 541
           IK+  DIL +  R++ I K+  +++  +    RRT+I+  E +L     D + +E++VV 
Sbjct: 3   IKDYEDILLNPVRIINIYKRRTINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVM 62

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           ++  G++KR+  + Y+ Q  GGKG S   + D D
Sbjct: 63  LTKKGFLKRLSQNEYKLQGTGGKGLSSYDLNDGD 96


>gi|75763518|ref|ZP_00743229.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74488989|gb|EAO52494.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 67

 Score = 47.0 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
          + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K A+
Sbjct: 11 LEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAK 66


>gi|83416399|gb|ABC18235.1| DNA gyrase subunit A [bacterium Re#70A]
          Length = 36

 Score = 47.0 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDAL R+AQ WS+R+  ++  GNFGS   DP
Sbjct: 1   DSSIYDALVRLAQPWSMRMPHVDSNGNFGSPGNDP 35


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 10/102 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R++P + DGLKP  R++++G+ +       +  K   ++G +     YH HG+ ++   +
Sbjct: 645 RSLPCVLDGLKPAQRKVIYGLQKRA---GNREGKVNDLAGYISSNTAYH-HGDQSLVMTI 700

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRL 135
             MAQD+  +  + L+E +GNFGS  + G   +A RY    L
Sbjct: 701 VSMAQDFVGANNINLLEPRGNFGSRFMGGKDASAARYIHTCL 742


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 15/139 (10%)

Query: 16  ITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           IT + I+D +    + +++  NV   R+IP + DG KP  R++L+G  +  +   +  +K
Sbjct: 632 ITEIPISDFINKELILFSMSDNV---RSIPSVLDGFKPGQRKVLYGCFKKKL---RSEIK 685

Query: 74  CARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +A
Sbjct: 686 VAQLAGYVSENTGYH-HGEQSLVPTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGKDFSA 744

Query: 128 ERYTECRLQKAAHFLLDDL 146
            RY    L +    + + L
Sbjct: 745 ARYIFTELSEITRKIFNPL 763


>gi|315273175|ref|ZP_07869218.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616198|gb|EFR89280.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 42

 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
          E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGL
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGL 42


>gi|75763034|ref|ZP_00742824.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489481|gb|EAO52907.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 125

 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)

Query: 846 PVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEI 902
           P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VIF   K    R+V +E +R+ E+
Sbjct: 17  PLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIVGIEIVRDDEL 76

Query: 903 V 903
           V
Sbjct: 77  V 77


>gi|23345305|gb|AAN28728.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R GKGI+  +++  N  G L  +  VND++ I++++D G +IR  V +I    R+
Sbjct: 1   YPTKGRGGKGIKTANITAKN--GPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRS 58

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVD 904
             GV +    ++ ++V+   ++ SE+++
Sbjct: 59  AMGVKVMRLDENAKIVTFALVK-SEVIE 85


>gi|38569887|gb|AAR24461.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R GKGI+  +++  N  G L  +  VND++ I++++D G +IR  V +I    R+
Sbjct: 1   YPTKGRGGKGIKTANITAKN--GPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRS 58

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVD 904
             GV +    ++ ++V+   ++ SE+++
Sbjct: 59  AMGVKVMRLDENAKIVTFALVK-SEVIE 85


>gi|530421|emb|CAA83739.1| DNA gyrase (alpha) [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 257

 Score = 45.4 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 15/257 (5%)

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           +RL RLT    + +  E   L  +IK+  +IL+    L   I   L  VK +    R+++
Sbjct: 1   MRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIKRKSQ 60

Query: 520 IVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            VE L   LD++ ++ I+ +++ + +S  GY+K +  ++         G+     +  D 
Sbjct: 61  -VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGK-----KPNDM 114

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
                + S    ++  S     Y   ++++     + +G  + ++ +    E I   +  
Sbjct: 115 WISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVI 174

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSVETCTQEN 694
            E  +S  +L +V  TK+G ++R ++SD      N+S KI MK+   D ++  +  + + 
Sbjct: 175 KEFINSTQHLLLV--TKNGLIKRTQISDLETKIFNKSFKI-MKISDDDSLVYADLISSKT 231

Query: 695 D-ILLTTKLGQCVRFPI 710
               + TK G  VR+ I
Sbjct: 232 SYCCIVTKNGYAVRYNI 248


>gi|289810787|ref|ZP_06541416.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 229

 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 36/233 (15%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFI 582
           M + D +  E + + +S +G+V            R  KG      G+  +  D       
Sbjct: 18  MSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYKAGDSFKAAVK 65

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDE 640
             ++  V+F  + G  Y       PI  P ARG+   L   L+L  G  +  ++   +D+
Sbjct: 66  GKSNQPVVFIDTTGRSYAID----PITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQ 121

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT- 699
                  ++ A+  G       +D +  NR+GK  + L     ++       E+D+LL  
Sbjct: 122 K------LLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAI 175

Query: 700 TKLGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISMAIVL----HAD 745
           T+ G+ + FP+ ++   +   G   + +     AKGD  ++   VL    H+D
Sbjct: 176 TQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPTKHSD 228


>gi|320540649|ref|ZP_08040296.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029289|gb|EFW11321.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 79

 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 32/45 (71%)

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E
Sbjct: 1   MITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAE 45


>gi|83416387|gb|ABC18229.1| DNA gyrase subunit A [bacterium PS#22]
          Length = 36

 Score = 44.7 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IY AL R+AQ W++R+ L++  GNFGS   DP
Sbjct: 1   DSSIYVALVRLAQPWTMRMPLVDSNGNFGSPGNDP 35


>gi|213618678|ref|ZP_03372504.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 275

 Score = 44.7 bits (104), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 28/224 (12%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFI 582
           M + D +  E + + +S +G+V            R  KG      G+  +  D       
Sbjct: 12  MSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYKAGDSFKAAVK 59

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             ++  V+F  + G  Y      LP  S + +G+ L   L+L  G  +  ++   +D+  
Sbjct: 60  GKSNQPVVFIDTTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK- 116

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TK 701
                ++ A+  G       +D +  NR+GK  + L     ++       E+D+LL  T+
Sbjct: 117 -----LLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQ 171

Query: 702 LGQCVRFPISAIRVFA---GRNSVGVRGISLAKGDQVISMAIVL 742
            G+ + FP+ ++   +   G   + +     AKGD  ++   VL
Sbjct: 172 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVL 215


>gi|255039923|gb|ACT99718.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 30

 Score = 44.3 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 22/30 (73%)

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           QGNFGSVDGD  AA RYTE R+ K  H LL
Sbjct: 1   QGNFGSVDGDNAAAMRYTEIRMAKIGHELL 30


>gi|32481440|gb|AAP84066.1| topoisomerase [Enterococcus casseliflavus]
 gi|32481446|gb|AAP84069.1| topoisomerase [Enterococcus gallinarum]
          Length = 29

 Score = 44.3 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQD 103
           A+  G +MG +HPHG+++IY+A+ RM+QD
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQD 29


>gi|227496005|ref|ZP_03926316.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834493|gb|EEH66876.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+P   G   + +L  L  GE +  ++P  E +       VV AT  G ++R K  D   
Sbjct: 81  GAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQRE----PVVLATAGGVIKRVKPGDEPA 136

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              S ++ + L   D ++        + + L T   Q +RF  S +R   GR + G+ GI
Sbjct: 137 RGESWEV-ISLADGDRVVFAGIAADTDVLTLVTDDAQLLRFEASKVR-PQGRGAAGMAGI 194

Query: 728 SLAKGDQVISMAIV 741
           SL +G +VI+ A V
Sbjct: 195 SLHEGARVIAGASV 208


>gi|167465536|ref|ZP_02330625.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 86

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKGI+  +V+  N  G +V +  V +++ +++++  GT+IR  ++ I I  R T+GV + 
Sbjct: 1   GKGIKTLNVTSKN--GPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLI 58

Query: 884 STAKDERVVSVERI 897
           +T +D+ V +V R+
Sbjct: 59  NTREDDEVATVTRV 72


>gi|325067252|ref|ZP_08125925.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 183

 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 7/134 (5%)

Query: 609 GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+P   G   +  ++ +   E++  ++P      S +N  +V AT  G ++R K  D  +
Sbjct: 37  GAPGLAGATQVRQLVDIEPEEKVVGLVPV----GSADNPPIVLATAEGVIKRVKPGDEPR 92

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              S ++ + L   D ++   T    + + L T   Q +RF  + +R   GR + G+ GI
Sbjct: 93  NAESWEV-ISLSEGDRVVFAGTAADTDFLALVTSDAQLLRFQAAKVR-PQGRGAGGMAGI 150

Query: 728 SLAKGDQVISMAIV 741
           SL +G +VI+ A V
Sbjct: 151 SLHEGARVIAGAAV 164


>gi|83416391|gb|ABC18231.1| DNA gyrase subunit A [bacterium Re#30]
          Length = 36

 Score = 43.9 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +++IYDAL R+AQ WS+R+ L++   NFG    DP
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNDNFGLPGNDP 35


>gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5]
          Length = 455

 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 71/171 (41%), Gaps = 37/171 (21%)

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           L GL IA  N+DEV+RIIR    P    + +M   W         DL D+          
Sbjct: 1   LGGLLIAYLNIDEVIRIIREEDEP----KPVMVARW---------DLTDN---------- 37

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
                 Q  AIL +RL  L  L   +IR E + L  E  E   +L+S  +    +  E+ 
Sbjct: 38  ------QVEAILNMRLRSLRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIG 91

Query: 507 SVKDELDTP-----RRTRIVEGLLDMED---EDCIVREDMVVTVSHLGYVK 549
            VK +         RRT+  +     E+   +  I +E + V +S  G+++
Sbjct: 92  EVKKKFAKATEVGRRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIR 142


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ +E  +  +  VS  D +    + ++I     R+IP   DG KP  R+ILF   +  +
Sbjct: 217 VNVNESMDYSVRQVSYRDFVDKELILFSI-ADCERSIPSAIDGFKPGQRKILFSCFKRNL 275

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
             + K V+ A    E    YH HG  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 276 VNSIKVVQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHG 333

Query: 122 GDPPAAERY 130
           G   AA RY
Sbjct: 334 GKDHAAPRY 342


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score = 42.7 bits (99), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+IP + DG KP  R++L+G  +  +   +  +K A++ G +     YH HG  ++   +
Sbjct: 655 RSIPSILDGFKPGQRKVLYGCFKRNL---RSEIKVAQLVGYISEHTGYH-HGEGSLAQTI 710

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
             +AQ++  +  L L++  G FGS    G   +A RY    +      + + L  D
Sbjct: 711 VGLAQNFVGANNLNLLQPIGLFGSRAAGGKDFSAVRYIHTNITDLTRVIFNPLDDD 766


>gi|20142122|dbj|BAB88924.1| gyrase A [Bacillus cereus]
          Length = 50

 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +V  R  VV RRT + L K +DR H++ GL +A+ ++DEV+ IIR S + 
Sbjct: 1   YVDHRLTVVRRRTAHRLGKRQDRLHLVEGLLLALVDIDEVIEIIRTSDDA 50


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
           tropicalis]
          Length = 1458

 Score = 42.4 bits (98), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 38/241 (15%)

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP       P VLVNG  GI  G +  IP ++  E+V     +       LD L  +   
Sbjct: 780 EPEWYIPIIPTVLVNGAEGIGTGWSCKIPNYDTREIVSNIGRL-------LDGLEPLPML 832

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           P +     ++   G       G  S++            D   I ++E+P +       E
Sbjct: 833 PSYKNFKGLIQELGPNQYILNGEVSVL------------DNTTIEISELPVRTWTQNYKE 880

Query: 283 KIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++ E +    EK    I D ++       + V++L      +     L++   LQ+  + 
Sbjct: 881 QVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVVKLTEQKLMEAEAAGLHKVFKLQTPLTC 940

Query: 340 NMVALNGYKPERFTLIGILKAFVA----FREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
           N + L       F  +G L+ +       RE  V+R   Y L     R   LVG+  A A
Sbjct: 941 NSMVL-------FDHVGCLRKYETATDILREFFVLRLKYYSL-----RKDWLVGMLTAEA 988

Query: 396 N 396
           +
Sbjct: 989 S 989


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 8/84 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
           R+I  + DG KPV R+IL+   +  +   +  +K +++ G +     YH HG+A++  ++
Sbjct: 677 RSIASVMDGFKPVQRKILYACYKRNL---RDEIKVSQLEGYIAEHTGYH-HGDASLMQSI 732

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS 119
             +AQD+  S  + L+   G FGS
Sbjct: 733 IGLAQDFVGSNNINLLVPHGGFGS 756


>gi|169837440|ref|ZP_02870628.1| DNA gyrase, A subunit [candidate division TM7 single-cell isolate
           TM7a]
          Length = 57

 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 589 VLFFS-SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +LFF+ ++G V++ K + +P  S QA+G A +N+L L   E+IT I+ F
Sbjct: 3   LLFFNLTVGRVFRLKAYEVPAASLQAKGVAAVNLLQLQPEEKITAIIKF 51


>gi|224532576|ref|ZP_03673199.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512519|gb|EEF82897.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 422

 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 58/108 (53%), Gaps = 2/108 (1%)

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           D + IV+ E+P+     +++  I + +R K  + ++ + D +  +   + + L RG  A 
Sbjct: 14  DEKTIVIRELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRGVYAS 71

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++
Sbjct: 72  EVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL 119


>gi|38305350|gb|AAR16193.1| antigen MLAA-44 [Homo sapiens]
          Length = 373

 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 25/221 (11%)

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP       P VL+NG  GI  G A  +P ++  E+V+    +++   +D   ++     
Sbjct: 16  EPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEG--LDPHPML----- 68

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           P++      +   G +N YA      V+           DR  + +TE+P +       E
Sbjct: 69  PNYKNFKGTIQELG-QNQYAVSGEIFVV-----------DRNTVEITELPVRTWTQVYKE 116

Query: 283 KIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++ E +    +K    I+D ++       + V+++     A      L++   LQ+  + 
Sbjct: 117 QVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTC 176

Query: 340 NMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           N + L    G   +  T+  ILK F   R      R ++L+
Sbjct: 177 NSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLV 217


>gi|260941163|ref|XP_002614748.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
 gi|238851934|gb|EEQ41398.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
          Length = 134

 Score = 41.2 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 105 SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           S  L L++  G FG+    G   +A RY   +L +    + + L     ++  + D S  
Sbjct: 5   SNNLNLLKPNGGFGTRAAGGKDFSAPRYIFTQLNEITRKVFNPLDDPLYNYLQD-DESTV 63

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           EP       P +LVNG  GI  G +TNIP+ N  ++V     +++  D++
Sbjct: 64  EPEWYLPVIPMLLVNGAEGIGTGWSTNIPSFNPADIVANIRRLMEGGDLE 113


>gi|169842194|ref|ZP_02875299.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 61

 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           ++++Y A+ RMAQD+++R  LI+G GNFG
Sbjct: 33  DSSVYGAMVRMAQDFNMRYELIDGHGNFG 61


>gi|227549737|ref|ZP_03979786.1| acyl-CoA synthetase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078233|gb|EEI16196.1| acyl-CoA synthetase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 567

 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI-AELVREKRIVDIADLRDESDRQG 307
           V  G+S +    GDR  I +   P  V     +  + A +V+   +    +L+D+ D  G
Sbjct: 64  VATGLSGLGVKQGDRVAIALPNCPQHVVSILAVHSLGATVVQHNPLYTAYELKDQFDDHG 123

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            +VVI   + A    +  +L R T L+ + +VNM+
Sbjct: 124 AKVVIAWDKAAP---VYKELARTTQLEKVITVNMI 155


>gi|213027129|ref|ZP_03341576.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 210

 Score = 39.3 bits (90), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 20/146 (13%)

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY------VVFATKHGNVRRN 660
           PI  P ARG          QGE +T  +  P   +  + L       ++ A+  G     
Sbjct: 15  PITLPSARG----------QGEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVC 64

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA-- 717
             +D +  NR+GK  + L     ++       E+D+LL  T+ G+ + FP+ ++   +  
Sbjct: 65  TFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKG 124

Query: 718 -GRNSVGVRGISLAKGDQVISMAIVL 742
            G   + +     AKGD  ++   VL
Sbjct: 125 KGNKIINIPSAEAAKGDDGLAHLYVL 150


>gi|169836657|ref|ZP_02869845.1| hypothetical protein cdivTM_06067 [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +L++ +GTLIR  +N+I + SR+  GV I     +E++ SV +I E+
Sbjct: 1   MLITSEGTLIRTSINDITVQSRSATGVRIMKVRNNEKIASVVKITEA 47


>gi|167948876|ref|ZP_02535950.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 65

 Score = 38.9 bits (89), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++ GTL+R PV ++    R T+GV +    K ER++ +ERI
Sbjct: 1   ITNGGTLVRTPVRDVSQMGRNTQGVTMIRLGKAERLIGIERI 42


>gi|317498959|ref|ZP_07957242.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893792|gb|EFV15991.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score = 38.9 bits (89), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 87/170 (51%), Gaps = 18/170 (10%)

Query: 581 FIVSTHTS--VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ-GERITTIMPFP 637
           FIV    +  +  F++LG +++ KV  +P G  + +G  + N+ + +   E I  ++   
Sbjct: 28  FIVPCMNTDKICIFTNLGVMHQIKVLDIPAGKFRDKGVPIDNLCNYDSTKEYIIQVL--- 84

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI--AMKLDSRDEILSVETCT---- 691
            D  S  +  ++FAT    +   K+ D   +N + +   A KL S DE++ V        
Sbjct: 85  -DAESMIHSSLLFATAKSML---KVMDGELLNAAKRTVQATKL-SEDELIEVIPIDWMEG 139

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            E+ ++L TK G  ++F +S I     ++++GVRG+ L+K D + ++ ++
Sbjct: 140 SEDKVVLQTKEGVFLKFLLSEIPK-KKKSALGVRGMKLSKDDSLTNIYVM 188


>gi|156347131|ref|XP_001621647.1| hypothetical protein NEMVEDRAFT_v1g144180 [Nematostella vectensis]
 gi|156207799|gb|EDO29547.1| predicted protein [Nematostella vectensis]
          Length = 170

 Score = 38.9 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK    VS  D +    + ++ N    R+IP L DGLKP  R+++F   +     +K+ V
Sbjct: 93  EKDTKRVSYCDFVNKELILFS-NTDNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREV 148

Query: 73  KCARISGEV--MGKYHPHG 89
           K A+++G +  +  YH HG
Sbjct: 149 KVAQLAGSIAELSAYH-HG 166


>gi|309807643|ref|ZP_07701585.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169109|gb|EFO71185.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 76

 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            +E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++RL  +I +E   V
Sbjct: 6   FTEKQAEAIVYLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVKEFEDV 65

Query: 509 KDELD 513
           K  LD
Sbjct: 66  KKSLD 70


>gi|253568270|ref|ZP_04845681.1| DNA gyrase [Bacteroides sp. 1_1_6]
 gi|251842343|gb|EES70423.1| DNA gyrase [Bacteroides sp. 1_1_6]
          Length = 113

 Score = 38.1 bits (87), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
           G LV +  V D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++
Sbjct: 8   GKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKV 67

Query: 898 RESEIVDEAESTE 910
               + DE  + E
Sbjct: 68  MTESLEDEVPAEE 80



 Score = 37.7 bits (86), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIV 741
           +++++++ T END+++  K G  +R  ++ +R+  GR + GVR I+L K  DQ+ S+  V
Sbjct: 9   KLVTIKSVTDENDLMIINKSGITIRLKVADVRIM-GRATQGVRLINLEKRNDQIGSVCKV 67

Query: 742 L 742
           +
Sbjct: 68  M 68


>gi|319952720|ref|YP_004163987.1| glycyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
 gi|319421380|gb|ADV48489.1| glycyl-tRNA synthetase [Cellulophaga algicola DSM 14237]
          Length = 513

 Score = 37.7 bits (86), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 20/130 (15%)

Query: 260 SGDREQIVVTE---IPYQVNKAAMLEKIAELVREKRIVDIADLRDE-------------S 303
           S D++Q + T    + YQ     +L+++ + +  + +VD+ +L DE             +
Sbjct: 131 SFDKDQFLATNQRVVDYQEKINTILKRLGKSLENEDLVDVRNLIDELDIVCPISGSKNWT 190

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL-IGILKAFV 362
           D + + ++   K GASAD  ++   R  + Q +F VN   LN  K  R  +  GI +   
Sbjct: 191 DVKQFNLMFGTKLGASADSAMDLYLRPETAQGIF-VNF--LNVQKTGRMKIPFGIAQVGK 247

Query: 363 AFREEVVVRR 372
           AFR E+V R+
Sbjct: 248 AFRNEIVARQ 257


Searching..................................................done


Results from round 2




>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 1036 bits (2677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 910/910 (100%), Positives = 910/910 (100%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM
Sbjct: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV
Sbjct: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA
Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR
Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR
Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL
Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV
Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK
Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN
Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN
Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS
Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA
Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES
Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900

Query: 901 EIVDEAESTE 910
           EIVDEAESTE
Sbjct: 901 EIVDEAESTE 910


>gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 909

 Score =  989 bits (2556), Expect = 0.0,   Method: Composition-based stats.
 Identities = 793/909 (87%), Positives = 857/909 (94%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI+ +DEE EKGITSVSI +EMQNSYLTYAINVILGRAIPDLRDGLK VHRRILFGM
Sbjct: 1   MTEHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS+
Sbjct: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++GC+A+IDNPDIDLD +M+II GPDFPTGA+ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGSIVIRGV+HIEKT GDRE+I+VTEIPYQVNK+AMLEKIAELVREKRIVDI+DLR
Sbjct: 241 YATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI ILK 
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIEILKN 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEVV RRTKYLLNKARDRAHVLVGLAIAV+NLDEVVRIIRFSPNPE+ARRELMQR
Sbjct: 361 FIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +WNA DIKDLIDLIDDSSYTI SDG MYLSEVQTRAILELRLARLTGLGRDDIR+ELNSL
Sbjct: 421 NWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+CL+ILSSRSRLL IIKQEL  +KDELDTPRRT IV+GLLDMEDEDCIVREDMVV
Sbjct: 481 GTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTPRRTEIVDGLLDMEDEDCIVREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPLS+YRAQRRGGKGRSGVV R+EDFVTDLFIV+THT VLFFSSLGFVYK
Sbjct: 541 TVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIGSPQ+RGKALINILSL QGERITTIMP PEDESS ++LYVVFATK GNVRRN
Sbjct: 601 EKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NRSGKIAMKLD  DEILSVETC + ND+LLTTKLGQC+RF I+ +RVF+GRN
Sbjct: 661 KLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDVRVFSGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           SVGVRGI LA+ DQVISMAIVLHADADYDER+CYMK+M++ RRLI+ D +E   LKNDSS
Sbjct: 721 SVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDEGGVLKNDSS 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +EG ISEERC+ELK KEQFILTVSEKGFGKRTSSYDFRIS+R GKGI ATD SK++EIG 
Sbjct: 781 IEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGP 840

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++ FPVND DQIILVSDKGTLIRVPVN+IRIASR+TKGVVIFSTAKDERVVSVERI ES
Sbjct: 841 LISAFPVNDKDQIILVSDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDERVVSVERISES 900

Query: 901 EIVDEAEST 909
           +I+D +E  
Sbjct: 901 DIIDVSEEE 909


>gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419]
 gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419]
          Length = 931

 Score =  973 bits (2514), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/909 (69%), Positives = 757/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDACIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL SV+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS+KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 56/300 (18%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D      +     V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTIMPLPEDETTWQNL----DVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGK--------------ALI 619
           D +  +   +    V+  ++LG   +  V  + +     + G               A++
Sbjct: 683 DEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIGVRGISLGDGDRIISMAIV 742

Query: 620 NILSLNQ------------------GERITTIMPFPE------------DESSWNNLYVV 649
             +                      GE    ++   E            +E      +++
Sbjct: 743 AHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEVTNGGELTNERYEELKAREQFIL 802

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQ 704
             +K G  +R+   DF    R GK     D        E+++       + I+L +  GQ
Sbjct: 803 TVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQ 862

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R P+  IR+ A R + GV   S AK ++V+S+  +   D D +      + + AQ  L
Sbjct: 863 LIRVPVEGIRL-ASRATKGVTIFSTAKDEKVVSVERISEPDGDEEIEAVGAEGVMAQPEL 921


>gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
 gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 927

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 630/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKTPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A+ID+P I+L  LM+I+ GPDFPTGA+ILGR GI+ A
Sbjct: 181 GIAVGMATNIPPHNLSEVINGCIALIDDPAIELPELMQIVPGPDFPTGALILGRAGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVAFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ L+ILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D++LTT +GQC+RFP+S +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAI+ H +A+  ER  Y+K  +A+RR  +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G +S ER +ELK +EQF+LT+SE+GFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 ANGGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV  NDQI+LVSD G LIRVPV+ IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVEHNDQIMLVSDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAES 908
            +  DE E 
Sbjct: 901 PDGEDEIEE 909


>gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021]
 gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021]
          Length = 931

 Score =  972 bits (2511), Expect = 0.0,   Method: Composition-based stats.
 Identities = 633/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 102/299 (34%), Gaps = 56/299 (18%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D            V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTIMPLPEDETTW----ENLDVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGK--------------ALI 619
           D +  +   +    V+  ++LG   +  V  + +     + G               A++
Sbjct: 683 DEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIGVRGISLGDGDRIISMAIV 742

Query: 620 NILSLNQ------------------GERITTIMPFPE------------DESSWNNLYVV 649
             +                      GE    ++   E            +E      +++
Sbjct: 743 AHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTNGGELTNERYEELKAREQFIL 802

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQ 704
             +  G  +R+   DF    R GK     D        E+++       + I+L +  GQ
Sbjct: 803 TVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQ 862

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +R P+  IR+ A R + GV   S AK ++V+S+  +   D D +      + + A+  
Sbjct: 863 LIRVPVEGIRL-ASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVMAEPE 920


>gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
 gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
          Length = 931

 Score =  971 bits (2510), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 102/299 (34%), Gaps = 56/299 (18%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D            V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTIMPLPEDETTW----ENLDVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGK--------------ALI 619
           D +  +   +    V+  ++LG   +  V  + +     + G               A++
Sbjct: 683 DEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIGVRGISLGDGDRIISMAIV 742

Query: 620 NILSLNQ------------------GERITTIMPFPE------------DESSWNNLYVV 649
             +                      GE    ++   E            +E      +++
Sbjct: 743 AHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTNGGELTNERYEELKAREQFIL 802

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQ 704
             +  G  +R+   DF    R GK     D        E+++       + I+L +  GQ
Sbjct: 803 TVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQ 862

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +R P+  IR+ A R + GV   S AK ++V+S+  +   D D +      + + A+  
Sbjct: 863 LIRVPVEGIRL-ASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVMAEPE 920


>gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
 gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
          Length = 931

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 105/305 (34%), Gaps = 56/305 (18%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D            V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTIMPLPEDETTW----ENLDVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGK--------------ALI 619
           D +  +   +    V+  ++LG   +  V  + +     + G               A++
Sbjct: 683 DEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGRNSIGVRGISLGDGDRIISMAIV 742

Query: 620 NILSLNQ------------------GERITTIMPFPE------------DESSWNNLYVV 649
             +                      GE    ++   E            +E      +++
Sbjct: 743 AHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEVTNGGELTNERYEELKAREQFIL 802

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQ 704
             +  G  +R+   DF    R GK     D        E+++       + I+L +  GQ
Sbjct: 803 TVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLVSDGGQ 862

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R P+  IR+ A R + GV   S AK ++V+S+  +   D D +      + + A+  L
Sbjct: 863 LIRVPVEGIRL-ASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVMAEPEL 921

Query: 765 ISGDT 769
            +  T
Sbjct: 922 PTDTT 926


>gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42]
          Length = 941

 Score =  969 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 635/905 (70%), Positives = 754/905 (83%), Gaps = 1/905 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVATIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ LDILSSR R+  I+K EL +V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIRDYLDILSSRVRIQTIVKDELSAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT  +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L +GD++ISM IV H DA+  ER  Y+K  +A+RR I  D E+I  +  + 
Sbjct: 721 NSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVD 904
            E  D
Sbjct: 901 PEEDD 905


>gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
 gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
          Length = 934

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 641/911 (70%), Positives = 759/911 (83%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQK AH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  +M+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSIV+RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSIVMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F  N+VALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K+EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+++THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTIMP PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT LGQC+RF +S +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISLA GD +ISM IV H DA+  ER  Y+K  +++RR  +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK  EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D++QI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVEDSNQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAESTE 910
            E  D+A   +
Sbjct: 901 PEGDDDAVEAD 911



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 108/313 (34%), Gaps = 56/313 (17%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDE      D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTIMPLP---EDETSWDNLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKA--------------LI 619
           D +  +   + H  VL  ++LG   + +V  + +     + G                ++
Sbjct: 683 DEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGRNSIGVRGISLASGDSIISMTIV 742

Query: 620 NILSLNQ------------------GERITTIMPFPE------------DESSWNNLYVV 649
           N +                      GE     +   E            +E      +V+
Sbjct: 743 NHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEVTEEGQLSDERYEELKALEQFVL 802

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQ 704
             ++ G  +R+   DF    R GK     D        E+++       N I+L +  GQ
Sbjct: 803 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPVEDSNQIMLVSDGGQ 862

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R P+  IR+ A R + GV   S AK ++V+S+  +   + D D      +        
Sbjct: 863 LIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERISEPEGDDDAVEADAEDGVPNGEA 921

Query: 765 ISGDTEEITSLKN 777
                E   + + 
Sbjct: 922 EVPAGEAEGTSEE 934


>gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 941

 Score =  962 bits (2487), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/899 (70%), Positives = 751/899 (83%), Gaps = 1/899 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISLA GD++ISM IV H +A+  ER  Y+K  +  RRL +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLAGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK  EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 107/319 (33%), Gaps = 62/319 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D E          V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTILPLPEDEESW----DNLDVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D +  +   +    VL  ++LG   +  V  + +     + G   +  +SL  G+RI ++
Sbjct: 683 DEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGRNSIG---VRGISLAGGDRIISM 739

Query: 634 MPFPE-----------------------------------------------DESSWNNL 646
                                                               +E      
Sbjct: 740 TIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEVTEEGQLSDERYEELKQLEQ 799

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTK 701
           +V+  ++ G  +R+   DF    R GK     D        E+++       + I+L + 
Sbjct: 800 FVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSD 859

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ +R P+  IR+ A R + GV   S AK ++V+S+  +   + D  E    +    A 
Sbjct: 860 GGQLIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAVEVAEGGAP 918

Query: 762 RRLISGDTEEITSLKNDSS 780
                   E   +  + + 
Sbjct: 919 ATDEGAAGEAPIADGDPAG 937


>gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
 gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score =  961 bits (2483), Expect = 0.0,   Method: Composition-based stats.
 Identities = 576/913 (63%), Positives = 720/913 (78%), Gaps = 9/913 (0%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +   S S       I  VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MADQDSSVSGGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDP AA RYTECRLQK AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG 
Sbjct: 121 VDGDPAAAMRYTECRLQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D  +A+++NP + L+ L+EII GPDFPTG +ILGR+GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIILGRSGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+V+RG   +E+    RE ++V+EIPYQVNKA M+EKIAELVREKRI  I+D+
Sbjct: 241 AYETGRGSVVMRGKVEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELK+ A ADVILNQLYR+++LQ+ F  NMVALNG +PE+  L  +LK
Sbjct: 301 RDESDRLGMRVVIELKKDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQMLLSDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEV+ RRT++LL KARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LMQ
Sbjct: 361 AFIAFREEVIGRRTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQ 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R+W A D+  LI LIDD  +T+  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN 
Sbjct: 421 RNWPAMDVAPLILLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           LG EI + L+IL SR R+  II++ELL +++E  TPR+T IVEG  D+EDED I REDMV
Sbjct: 481 LGEEIADYLEILRSRPRIQQIIREELLEIRNEFATPRKTEIVEGGADLEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+G P +RGKAL+N+L L  GE+I++IMP PE+E SW +L V+FAT  G VRR
Sbjct: 601 KMKVWRLPLGGPTSRGKALVNLLPLEAGEQISSIMPLPENEDSWADLDVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF Q+NR+GKIAMKLD  D I+ V TCT+ +D+LLTT  GQC+RFP++ +RVFAGR
Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFPVTDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKN 777
           NSVGVRGI+LA+ D +ISM+I+ H +AD +ER+ Y+K     RRL+ G+TE+  +     
Sbjct: 721 NSVGVRGINLAEDDHLISMSILRHFEADAEERVTYLKR----RRLMRGETEDAGVEDEAE 776

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           ++  EG++S ER  E+   EQ ILTVSE G+GKRTSS+++R++ R GKGI A  V++ N 
Sbjct: 777 EAGAEGHLSLERYAEMSAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMAVTRRN- 835

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA FPV D+DQI+LV+D G LIR PV+ IR+A RAT+GV++F+TA+DE+VV+VER+
Sbjct: 836 -GPLVAAFPVEDSDQIMLVTDGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVERV 894

Query: 898 RESEIVDEAESTE 910
            E E  D    +E
Sbjct: 895 SEDEDGDTGAESE 907


>gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 945

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 627/899 (69%), Positives = 749/899 (83%), Gaps = 1/899 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA+ID+P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+++D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L   D++ISM IV H DA+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER  EL+ +EQF+LTVS+KGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899


>gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
 gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
          Length = 930

 Score =  956 bits (2470), Expect = 0.0,   Method: Composition-based stats.
 Identities = 626/909 (68%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTDQSPPGGGKLPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGNAAIYDALARMAQDWSLRL LI+GQGNFGS+
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+I+GR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIMGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG + IE   GDREQI++TE+PYQVNKA M+EK+AELV+EKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRATIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQ+YRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQIYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KARDRAHVLVGLAI+VAN+DEV+R+IR +P+P +AR ELM R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAQDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI E L+ILSSR R++ I+K EL++++DE  TPRR+ IVEG  DM+DED I REDMVV
Sbjct: 481 GAEISEYLEILSSRLRIMQIVKDELIAIRDEFGTPRRSEIVEGGPDMDDEDLISREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV  LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ++GKALIN+L L  GERITTIMP PEDE++W  L V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KL DF+Q+NR+GKIAMKL +  DEILSVETCT ++D+LLTT LGQC+RFP+  +RVFAGR
Sbjct: 661 KLGDFVQVNRNGKIAMKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI++A GD++ISM IV H +A+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSVGVRGINMADGDRIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +SEER QELK +E+F+LTVSEKG+GKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 AEEGELSEERYQELKAREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV++ DQI+LVSD G LIRVPVN IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVDEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINE 900

Query: 900 SEIVDEAES 908
            E  +EAE+
Sbjct: 901 PEGDEEAEN 909


>gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4]
 gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4]
          Length = 930

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 627/908 (69%), Positives = 751/908 (82%), Gaps = 2/908 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +    I  +SI  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MTEQSTPGG-KMPSDIEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+
Sbjct: 60  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 120 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A+I+NP IDL  LM+II GPDFPTGA+ILGR+GI++A
Sbjct: 180 GIAVGMATNIPPHNLVEVINGCIALIENPAIDLPELMQIIPGPDFPTGALILGRSGIRSA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI  I+DLR
Sbjct: 240 YETGRGSVIMRGVARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQS F  NMVALNG KPE+ TL+ +L+A
Sbjct: 300 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLDMLRA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEV+ RRTKYLL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P+TAR +LM+R
Sbjct: 360 FVSFREEVISRRTKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMER 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I  ELN +
Sbjct: 420 RWPAADVESLIRLIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKI 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI + LDILSSR+R+  I+  EL++V+DE  TPRR++I+EG  DM+DED I REDMVV
Sbjct: 480 GAEISDYLDILSSRTRIQTIVVDELVAVRDEFGTPRRSQIMEGGPDMDDEDLIAREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL  YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 540 TVSHLGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE+SW+NL V+F+T  G VRRN
Sbjct: 600 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRN 659

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT ++D+LLTT LGQ +RFP+  +RVFAGR
Sbjct: 660 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL   D++ISM I+ H DA+  +R  Y+K  + +RR    D ++I  +  + 
Sbjct: 720 NSIGVRGISLQPNDRIISMTILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEV 779

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              G++SEER QELK +EQF+LT+SE+G GKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 780 GEIGDLSEERYQELKAREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIG 839

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LVSD G LIRVPV+ IRIASRATKGV IF+TAKDE+VVSVERI E
Sbjct: 840 QLVAAFPVEDKDQIMLVSDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINE 899

Query: 900 SEIVDEAE 907
            E  ++ E
Sbjct: 900 PEGEEDGE 907



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 110/313 (35%), Gaps = 62/313 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDE      D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 627 ERITTIMPLP---EDEASWDNLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEEEG 681

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D +  +   +    VL  ++LG   +  V  + +     + G   +  +SL   +RI ++
Sbjct: 682 DEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGRNSIG---VRGISLQPNDRIISM 738

Query: 634 MP--------------------------FPED---------------------ESSWNNL 646
                                         ED                     E      
Sbjct: 739 TILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEVGEIGDLSEERYQELKAREQ 798

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTK 701
           +V+  ++ G  +R+   DF    R GK     D        ++++      ++ I+L + 
Sbjct: 799 FVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIMLVSD 858

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ +R P+  IR+ A R + GV   + AK ++V+S+  +   + + D  I         
Sbjct: 859 GGQLIRVPVDGIRI-ASRATKGVTIFNTAKDEKVVSVERINEPEGEEDGEIGAETSAEEG 917

Query: 762 RRLISGDTEEITS 774
               +   +E  +
Sbjct: 918 VATDTATPDESAT 930


>gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 935

 Score =  954 bits (2465), Expect = 0.0,   Method: Composition-based stats.
 Identities = 597/915 (65%), Positives = 733/915 (80%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  L++
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K +  +L D+ KDTVDF+ NYDG  QEPVV+ AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LMEII GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+GI +AY TGRGS+V+RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRSGINSAYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IEGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L+ +L+AFV FREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 NLLDMLRAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A+D+  LI LIDD  +TI  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA GD+VISMAI+ H DAD  ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLADGDKVISMAILHHVDADAAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  +   E  ++EER QELK +EQ +LTVSE G+GKR+SSY+FR+S R GKGIRAT
Sbjct: 781 DIVVVGEEVGNETELNEERYQELKAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVESSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI E++  +E
Sbjct: 901 VVSVERISETDSDEE 915



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 114/309 (36%), Gaps = 63/309 (20%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERIT-- 631
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L  G+++   
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLADGDKVISM 747

Query: 632 TIMPFPEDESSWNNLY-------------------------------------------- 647
            I+   + +++  + Y                                            
Sbjct: 748 AILHHVDADAAERSAYLKRSIAERRAQGADDADDIVVVGEEVGNETELNEERYQELKARE 807

Query: 648 --VVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  +++G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 QTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVESSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +   D+D +           
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISETDSDEENGGEGDASPEG 926

Query: 761 QRRLISGDT 769
           +      + 
Sbjct: 927 EAPAAGSEE 935


>gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 934

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE  W NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDFWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10]
 gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94]
 gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1]
 gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1]
 gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether]
 gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1]
 gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
          Length = 934

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/915 (65%), Positives = 732/915 (80%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
 gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
          Length = 934

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 732/915 (80%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVV+ AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 934

 Score =  952 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/915 (65%), Positives = 732/915 (80%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 913

 Score =  952 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/902 (61%), Positives = 691/902 (76%), Gaps = 6/902 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G E
Sbjct: 9   PGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFE 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PA
Sbjct: 69  WNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPA 128

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGM
Sbjct: 129 AMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGM 188

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR+GI++AY TGRG
Sbjct: 189 ATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIRSAYQTGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+DLRDESDR 
Sbjct: 249 SIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRD 308

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L  FVAFRE
Sbjct: 309 GFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFRE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A+D
Sbjct: 369 QVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAAD 428

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I +EL+ L +EI +
Sbjct: 429 VAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELDKLAVEIAD 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L+IL SR+R+  I+K EL +VK E  TPR+T IVE   ++EDED I REDMVVTVSH G
Sbjct: 489 YLEILRSRARVQTIVKDELGAVKAEFATPRKTVIVEQEGEVEDEDLIQREDMVVTVSHAG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRL
Sbjct: 549 YVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRL 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVRRNKLSDF+
Sbjct: 609 PLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFV 668

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR S+GVRG
Sbjct: 669 DVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRG 728

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN-- 784
           I+L+ GD+VIS++I+ H +A   ER  Y+K   A RR  +G+  E        + EG+  
Sbjct: 729 IALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEESEPIETPEVEAEEGDTS 788

Query: 785 --ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+  N  G LV
Sbjct: 789 AALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNGRN--GKLV 846

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSVERI E++ 
Sbjct: 847 ASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDD 906

Query: 903 VD 904
            D
Sbjct: 907 GD 908



 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 17/253 (6%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    ++  +  + +  DE    +   +E+ ++  +  G   R P+S  R    R   G
Sbjct: 513 EFATPRKTVIVEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLSTYRA-QRRGGKG 567

Query: 724 VRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
             G++  + D V  + +      VL   +        +  +        G          
Sbjct: 568 RSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPLE 627

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  I      E    E  ++  +  G  +R    DF    RSG  I A  +     
Sbjct: 628 QGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSG--IIAMKLDDGE- 684

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896
             A+V V    + D ++L +  G  IR PV ++R+ + R + GV   + +  ++V+S+  
Sbjct: 685 --AIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDKVISLSI 742

Query: 897 IRESEIVDEAEST 909
           +R  E      ST
Sbjct: 743 LRHFEATPAERST 755



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 95/256 (37%), Gaps = 29/256 (11%)

Query: 511 ELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+    +    + D       D V+  +  G   R P+   R    R   G
Sbjct: 666 DFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMG 725

Query: 566 RSGVVMRDEDFVTDL-----FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK---A 617
             G+ +   D V  L     F  +      +    G +              A G+    
Sbjct: 726 VRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAI-----------RRAATGEESEP 774

Query: 618 L-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           +    +   +G+    +      E S +  +V+  +++G  +R    ++    R GK  +
Sbjct: 775 IETPEVEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIV 834

Query: 677 KLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +       ++++       + I+L T  GQ +R P+  IRV AGR++ GV   + A  +
Sbjct: 835 AMSVNGRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRV-AGRSTQGVIVFNTADDE 893

Query: 734 QVISMAIVLHADADYD 749
           +V+S+  +   D   +
Sbjct: 894 KVVSVERIPETDDGDN 909


>gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 934

 Score =  951 bits (2458), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 732/915 (80%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEK+WRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKLWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512]
          Length = 919

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 623/877 (71%), Positives = 742/877 (84%), Gaps = 1/877 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GD
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+V
Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+
Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I 
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG
Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L
Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSR 681
            L  GERITTI+P PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  
Sbjct: 602 PLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H DA+  +R  Y+K  +A+RR    D E+I  +  + + EG +S+ER +ELK +EQF+L
Sbjct: 722 GHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           TVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G 
Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 878



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 63/322 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDE      D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 607 ERITTILPLP---EDEASWDNLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEEEG 661

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D +  +   + H  VL  ++LG   +  V  + +     + G   +  ++L +G+RI ++
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIG---VRGINLGEGDRIISM 718

Query: 634 MPF-----------------------------------------------PEDESSWNNL 646
                                                               +E      
Sbjct: 719 TIVGHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQ 778

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTK 701
           +V+  ++ G  +R+   DF    R GK     D        E+++       + I+L + 
Sbjct: 779 FVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSD 838

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSA 760
            GQ +R P+  IR+ A R + GV   S AK ++V+S+  I    + + +E +   +   A
Sbjct: 839 GGQLIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERISEPEEEETEEAVETAEGAPA 897

Query: 761 QRRLISGDTEEITSLKNDSSVE 782
                +G+T          + E
Sbjct: 898 ADESSAGETPVADGDPAGPAEE 919


>gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840]
 gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840]
          Length = 934

 Score =  951 bits (2457), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TG GS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVIGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVIGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33]
          Length = 934

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/915 (64%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTLKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIA-----MKLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK       +K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|190891755|ref|YP_001978297.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
 gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
          Length = 919

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 624/877 (71%), Positives = 741/877 (84%), Gaps = 1/877 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GD
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+V
Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+
Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I 
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG
Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L
Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSR 681
            L  GERITTI+P PEDE SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  
Sbjct: 602 PLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H DA+  ER  Y+K  +A+RR    D E+I  +  + + EG +S+ER +ELK +EQF+L
Sbjct: 722 GHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           TVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G 
Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 878



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 63/322 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D E          V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 607 ERITTILPLPEDEESW----DNLDVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 661

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D +  +   + H  VL  ++LG   +  V  + +     + G   +  ++L +G+RI ++
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIG---VRGINLGEGDRIISM 718

Query: 634 MPF-----------------------------------------------PEDESSWNNL 646
                                                               +E      
Sbjct: 719 TIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQ 778

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTK 701
           +V+  ++ G  +R+   DF    R GK     D        E+++       + I+L + 
Sbjct: 779 FVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSD 838

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSA 760
            GQ +R P+  IR+ A R + GV   S AK ++V+S+  I    + + +E +   +   A
Sbjct: 839 GGQLIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERISEPEEEETEEAVETAEGAPA 897

Query: 761 QRRLISGDTEEITSLKNDSSVE 782
                +G+T  +       + E
Sbjct: 898 AEEGSAGETPVVDGDPAGPAKE 919


>gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP IDL  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 945

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 625/899 (69%), Positives = 746/899 (82%), Gaps = 1/899 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+ID+P I+L  L++II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K ELL+V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RD DFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L   D++ISM IV H DA+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             EG +S++R  EL+ +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 IEEGQLSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LVA FP++D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 841 ELVAAFPIDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 111/324 (34%), Gaps = 56/324 (17%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDE      D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTILPLP---EDETSWDNLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQ------- 626
           D +  +   + +  VL  ++LG   +  V  + +     + G   IN+   ++       
Sbjct: 683 DEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGDSDRIISMTIV 742

Query: 627 ----------------------------------GERIT---TIMPFPEDESSWNNLYVV 649
                                             GE +     +     DE      +V+
Sbjct: 743 GHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVIEEGQLSDDRYDELRAREQFVL 802

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQ 704
             ++ G  +R+   DF    R GK     D        E+++       + I+L +  GQ
Sbjct: 803 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPIDDGDQIMLVSDGGQ 862

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R P+  IR+ A R + GV   S AK ++V+S+  +   + D  E    +   S     
Sbjct: 863 LIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAVEIAEGSPATEE 921

Query: 765 ISGDTEEITSLKNDSSVEGNISEE 788
            + D                 +EE
Sbjct: 922 GAADEGGGDEAPIADGDPAGPAEE 945


>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
 gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
 gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
 gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 922

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDFWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94]
          Length = 934

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNI  HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
 gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
 gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 922

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ STHT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDFWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308]
 gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457]
 gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1]
 gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA
           gyrase C-terminal repeat, beta-propeller [Brucella
           melitensis biovar Abortus 2308]
 gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457]
 gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90]
          Length = 922

 Score =  950 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99]
          Length = 922

 Score =  950 bits (2454), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915]
 gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915]
          Length = 922

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
 gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 922

 Score =  949 bits (2453), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13]
 gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
 gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
          Length = 934

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/915 (64%), Positives = 730/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ ++HT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGIKLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+ A  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  + L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGIKLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   ++A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNMADGEKVVSVERISDADSDEEN 916


>gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68]
 gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 922

 Score =  949 bits (2452), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  D+ILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
 gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
          Length = 922

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H D    ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDFWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 922

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 726/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 913

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/910 (60%), Positives = 689/910 (75%), Gaps = 8/910 (0%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++      E  +    I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK+Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I D
Sbjct: 241 AAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + L+IL SR+R+  I+K EL  VK E  TPRRT I E   ++EDED I REDM
Sbjct: 481 KLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+L+ GD VIS++I+ H +A   ER  Y+K   A RR  +G+  E       
Sbjct: 721 RTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEA 780

Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+ 
Sbjct: 781 EAEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNS 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSV
Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898

Query: 895 ERIRESEIVD 904
           ERI E++  +
Sbjct: 899 ERIPETDDGE 908



 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 21/265 (7%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G V+    ++F    R+     + +  DE    +   +E+ ++  +  G   R P+S
Sbjct: 505 TELGEVK----AEFATPRRTVIAEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLS 556

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLI 765
             R    R   G  G++  + D V  + +      VL   +        +  +       
Sbjct: 557 TYRA-QRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNG 615

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            G                 I      E    E  ++  +  G  +R    DF    RSG 
Sbjct: 616 RGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSG- 674

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFS 884
            I A  + +     A+V V    + D ++L +  G  IR PV ++R+ + R + GV   +
Sbjct: 675 -IIAMKLDEGE---AIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIA 730

Query: 885 TAKDERVVSVERIRESEIVDEAEST 909
            +  + V+S+  +R  E      ST
Sbjct: 731 LSSGDTVISLSILRHFEATPAERST 755



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 29/256 (11%)

Query: 511 ELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+    +    + D       D V+  +  G   R P+   R    R   G
Sbjct: 666 DFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMG 725

Query: 566 RSGVVMRDEDFVTDL-----FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK---A 617
             G+ +   D V  L     F  +      +    G +              A G+    
Sbjct: 726 VRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAI-----------RRAATGEENEP 774

Query: 618 L-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           +        +G+    +      E S +  +V+  +++G  +R    ++    R GK  +
Sbjct: 775 VETPEAEAEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIV 834

Query: 677 KLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +       ++++       + I+L T  GQ +R P+  IRV AGR++ GV   + A  +
Sbjct: 835 AMSVNSRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRV-AGRSTQGVIVFNTADDE 893

Query: 734 QVISMAIVLHADADYD 749
           +V+S+  +   D   +
Sbjct: 894 KVVSVERIPETDDGEN 909


>gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/910 (60%), Positives = 689/910 (75%), Gaps = 8/910 (0%)

Query: 1   MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++      E  +    I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK+Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I D
Sbjct: 241 AAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + L+IL SR+R+  I+K EL  VK E  TPRRT I E   ++EDED I REDM
Sbjct: 481 KLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+L+ GD VIS++I+ H +A   ER  Y+K   A RR  +G+  E       
Sbjct: 721 RTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEA 780

Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+ 
Sbjct: 781 EAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNS 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSV
Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898

Query: 895 ERIRESEIVD 904
           ERI E++  +
Sbjct: 899 ERIPETDDGE 908



 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 21/265 (7%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G V+    ++F    R+     + +  DE    +   +E+ ++  +  G   R P+S
Sbjct: 505 TELGEVK----AEFATPRRTVIAEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLS 556

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLI 765
             R    R   G  G++  + D V  + +      VL   +        +  +       
Sbjct: 557 TYRA-QRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNG 615

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            G                 I      E    E  ++  +  G  +R    DF    RSG 
Sbjct: 616 RGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSG- 674

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFS 884
            I A  + +     A+V V    + D ++L +  G  IR PV ++R+ + R + GV   +
Sbjct: 675 -IIAMKLDEGE---AIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIA 730

Query: 885 TAKDERVVSVERIRESEIVDEAEST 909
            +  + V+S+  +R  E      ST
Sbjct: 731 LSSGDTVISLSILRHFEATPAERST 755



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 29/256 (11%)

Query: 511 ELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+    +    + D       D V+  +  G   R P+   R    R   G
Sbjct: 666 DFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMG 725

Query: 566 RSGVVMRDEDFVTDL-----FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK---A 617
             G+ +   D V  L     F  +      +    G +              A G+    
Sbjct: 726 VRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAI-----------RRAATGEENEP 774

Query: 618 L-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           +        +G+    +      E S +  +V+  +++G  +R    ++    R GK  +
Sbjct: 775 VETPEAEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIV 834

Query: 677 KLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +       ++++       + I+L T  GQ +R P+  IRV AGR++ GV   + A  +
Sbjct: 835 AMSVNSRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRV-AGRSTQGVIVFNTADDE 893

Query: 734 QVISMAIVLHADADYD 749
           +V+S+  +   D   +
Sbjct: 894 KVVSVERIPETDDGEN 909


>gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
 gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 906

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 624/885 (70%), Positives = 747/885 (84%), Gaps = 1/885 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL+KAAH LLD
Sbjct: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGCVA
Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NP I+L  +M+II GPDFPTGA+I+GR+GI++AY TGRGS+++RGV+ IE   GDRE
Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI++TE+PYQVNKA+M+EK+AELV+EKRI  I+DLRDESDRQGYRVVIELKR A+A+VIL
Sbjct: 241 QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKYLL KARDRA
Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAI+VAN+DEV+R+IR +P+P +AR +LM R W A D++ LI LIDD  + I  D
Sbjct: 361 HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRLARLT LGRD+I +ELN +G EI E LDILSSR R+  I+K E
Sbjct: 421 GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L+S++DE  TPRR++IVEG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGK
Sbjct: 481 LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  RDEDFV  LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++GKALIN+L L
Sbjct: 541 GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDE 683
             GERITTIMP PEDE++W  L V+F+T  G VRRNKL DF+Q+NR+GKIAMKLD   DE
Sbjct: 601 EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ILSVETCT  +D+LLTT LGQC+RFP+  +RVFAGRNSVGVRGI++A+GD++ISM IV H
Sbjct: 661 ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH 720

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +A+  ER  Y+K  + +RR    D E+I  +  + + EG +SEER QELK +E+F+LTV
Sbjct: 721 VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV 780

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S KGFGKR+SSYDFR S R GKGIRATD +K NEIG LVA FPV + DQI+LVSD G LI
Sbjct: 781 SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI 840

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           RVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E  DEAE+
Sbjct: 841 RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAEN 885


>gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 922

 Score =  948 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD  K +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIA-----MKLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK       +K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1]
 gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1]
          Length = 934

 Score =  948 bits (2449), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEI YQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTE 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR   + D +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 636 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 690

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 691 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 747

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 748 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 807

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 808 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 867

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 868 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 916


>gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1]
 gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1]
          Length = 929

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/908 (65%), Positives = 724/908 (79%), Gaps = 3/908 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+      +E +  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+  
Sbjct: 1   MTDQTTRGPDEPD-DIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAS 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWS+R+ LI+GQGNFGS+
Sbjct: 60  YESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YDG+  EP +L AR+PN+LVNG G
Sbjct: 120 DGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GCVA+IDNP + L  L+EII GPDFPTG +ILGR+GI +A
Sbjct: 180 GIAVGMATNIPPHNLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIILGRSGIHSA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGS+V+RG + IE+   +RE I++TE+PYQVNKA M+EK+AELVREKRI  I+D+R
Sbjct: 240 YATGRGSVVMRGKTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYR+T LQ+ F  NMVALNG KPE   L+ +L+A
Sbjct: 300 DESDRQGYRVVIELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLLDMLRA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVV RRTKYLL K R+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 360 FVAFREEVVTRRTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMER 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LI D  + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 420 RWPAQDVESLILLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKI 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ LDILSSR+R+ GI+K EL++V+DE  TPRRT I EG  DMEDED I REDMVV
Sbjct: 480 GAEIQDYLDILSSRARVQGIVKDELIAVRDEFGTPRRTEITEGGADMEDEDLIPREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KRVPLS+YRAQ RGGKGRSG+  +DEDFVT LF+ +THT +LFFSS G VYK
Sbjct: 540 TVTHKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+ GK L N+L L +GERIT+IMP PEDE SW  L V+FAT  G VRRN
Sbjct: 600 EKVWRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFATTRGTVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF Q+NR+GKIAMKLD   DEIL+V TCT+++D+LLT   GQC+RFP++ +RVFAGR
Sbjct: 660 KLSDFTQVNRNGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKND 778
           NS+GVRGI+L  GD+VISMAIV H DA   ER  Y+K  +A+RRL +G D EEI     +
Sbjct: 720 NSIGVRGINLPDGDKVISMAIVGHVDATPAERAAYLKQAAAERRLSNGSDEEEIALTNEE 779

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +S ER +ELK +EQF+LTVSE G+GKR+SSYDFR+  R GKGIRATDVSK  EI
Sbjct: 780 VGEETVLSPERYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEI 839

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+L+A FPV   DQI+LVS+ G +IRVPV  IRIASRATKGV IF+TA  ERVVSV+RI 
Sbjct: 840 GSLIAAFPVAPEDQIMLVSNAGQIIRVPVTGIRIASRATKGVTIFNTADGERVVSVDRIS 899

Query: 899 ESEIVDEA 906
           E +  +E 
Sbjct: 900 EPQNGEED 907



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 107/309 (34%), Gaps = 63/309 (20%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D E    +     V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 627 ERITSIMPLPEDEESWAAL----DVMFATTRGTVRRNKLSDFTQVNRNGK-IAMKLDEEG 681

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D +  +F  +    VL  ++ G   +  V  + +     + G   +  ++L  G+++ ++
Sbjct: 682 DEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGRNSIG---VRGINLPDGDKVISM 738

Query: 634 ----------------------------------MPFPEDESSWN--------------N 645
                                             +    +E                   
Sbjct: 739 AIVGHVDATPAERAAYLKQAAAERRLSNGSDEEEIALTNEEVGEETVLSPERYEELKARE 798

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTT 700
            +V+  +++G  +R+   DF  I R GK     D         +++      E+ I+L +
Sbjct: 799 QFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEIGSLIAAFPVAPEDQIMLVS 858

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GQ +R P++ IR+ A R + GV   + A G++V+S+  +       ++          
Sbjct: 859 NAGQIIRVPVTGIRI-ASRATKGVTIFNTADGERVVSVDRISEPQNGEEDAAVPEGAGEI 917

Query: 761 QRRLISGDT 769
                 G+ 
Sbjct: 918 PPADSEGEG 926


>gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 922

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNI  HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 904


>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
 gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
          Length = 922

 Score =  947 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+ A  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDADSDEE 903



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  + L +G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGIKLAEGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   ++A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNMADGEKVVSVERISDADSDEEN 904


>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
 gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
          Length = 925

 Score =  946 bits (2444), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/911 (60%), Positives = 701/911 (76%), Gaps = 7/911 (0%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+    +        I  +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MTDQENSTPPGGVPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS
Sbjct: 61  MNENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTECRL+K AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D  +AV+ NP + +  LM+I+ GPDFPTG +ILGR+GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIILGRSGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGS+V+R    +E+   DR  ++V+EIPYQVNK++M+EKIAE VR+KRI  I+D+
Sbjct: 241 AYESGRGSVVMRSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELKR A  DV+LNQLYRY+ LQ+ F  NMVALNG KPE+  L  ILK
Sbjct: 301 RDESDRSGMRVVIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGKPEQLNLPDILK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF++FREEVV RRTK+LL KARDRAH+LVGL IAVAN+DEV+ +IR +P+P TAR +LM+
Sbjct: 361 AFISFREEVVQRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ LI LIDD  + +  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RDWPARDVEPLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDIL SR+R+  I++ E+L +K+E  TPR+T IV+G  D +DED I REDMV
Sbjct: 481 IGAEISDFLDILRSRARIQDIVRGEMLEIKEEFATPRKTEIVDGGADFDDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  Y
Sbjct: 541 VTVSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+G P +RGKALIN+L L QGE+I++IMP PEDE SW NL V+F+T  G VRR
Sbjct: 601 KMKVWRLPLGGPISRGKALINMLPLEQGEQISSIMPLPEDEESWANLDVMFSTVRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF QINR+GKIAMKL+  D I++V TC++ +D++LTT  GQC+RFP+  +RVFAGR
Sbjct: 661 NKLSDFTQINRNGKIAMKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI LA GD+VISM I+ H DA+ +ER  ++K      R + G+ +E        
Sbjct: 721 NSVGVRGIRLADGDKVISMQILHHMDAEAEERTAFLK----MSRALRGEADENAGSDETG 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V+  +S+ER  E+   EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V++ N  G
Sbjct: 777 AVDAGLSQERYAEMSAAEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVTERN--G 834

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV+ FPV ++DQI+LV++ G LIR PV+ IRIA RAT+GV++F TA  E VV+VE I E
Sbjct: 835 GLVSSFPVEESDQIMLVTNGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGISE 894

Query: 900 SEIVDEAESTE 910
            +  ++ ++ E
Sbjct: 895 VDDEEDVDAVE 905


>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
 gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
          Length = 940

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/885 (62%), Positives = 689/885 (77%), Gaps = 5/885 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K
Sbjct: 19  SDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRK 78

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTEC
Sbjct: 79  SARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTEC 138

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG GGIAVGMATNIP H
Sbjct: 139 RLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPH 198

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  +A+++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY TGRGS+ +R  
Sbjct: 199 NLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMILGRSGIRSAYETGRGSVPMRAK 258

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+   DR  ++VTEIPYQVNK+ M+EKIAE+VR+KR+  I+D+RDESDR G RVVIE
Sbjct: 259 VDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRDESDRSGMRVVIE 318

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A  DV+LNQLYR++ LQ+ F  NMVALNG KPE+  L  +LKAFVAFREEV+ RRT
Sbjct: 319 LKRDAVPDVVLNQLYRFSQLQTSFGANMVALNGGKPEQMNLSDMLKAFVAFREEVIQRRT 378

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +YLL K RDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W A D++DLI L
Sbjct: 379 RYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMERNWPARDVEDLIRL 438

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD  + +  DGT  LSE Q RAIL+LRL RLT +GRD+I  ELN +G EI + LDIL S
Sbjct: 439 IDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAEISDYLDILRS 498

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R+R+  I++ E+L +++E  TPRRT I+EG  D ++ED I REDMVVTVSH GY+KRVPL
Sbjct: 499 RARIQEIVRNEMLEIREEFATPRRTEIIEGGADFDEEDLIQREDMVVTVSHGGYIKRVPL 558

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KVWRLP+G P +
Sbjct: 559 ATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPTS 618

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGKAL+N+L L QGE+IT+I+P PEDE +W NL V+FAT  G VRRNKLSDF+ INR+GK
Sbjct: 619 RGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLSDFVNINRNGK 678

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL+  D I+ V+TC++ +DI+LTT  GQC+RFP + +RVFAGRNSVGVRGI LA GD
Sbjct: 679 IAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVGVRGIRLADGD 738

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++ISM I+ H D D +ER  Y+K   A R       E   +   D  V G +S+ER  E+
Sbjct: 739 RIISMQILHHIDVDAEERAAYLKLSRAMR---GEADENGAAADEDGVVAGELSQERYAEM 795

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V+  N  G L+A FPV D+DQI
Sbjct: 796 SAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRN--GGLIASFPVEDSDQI 853

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +LV+D G LIR PV  IRIA RAT+GV+IF TA+DE+VV+VE I 
Sbjct: 854 MLVTDGGQLIRCPVEGIRIAGRATQGVIIFKTAEDEKVVAVEGIS 898


>gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 923

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/892 (66%), Positives = 722/892 (80%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    +L D+ KDTVDF+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+I+NP I L+ ++EII GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIILGRAGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+  L+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDILSSR 
Sbjct: 432 DPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMTIVKDEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DAD   R  Y+K   A+RR   + D ++I  +  D   +  ++EE  QEL
Sbjct: 732 VISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGTDAELTEELYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI E++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISEADSDEE 903



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 108/290 (37%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D E    +     V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 624 ERITTIMPLPEDEESWANL----DVMFSTTRGTVRRNKLSDFVQVNRNGK-IAMKLEDEG 678

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L  G+++ + 
Sbjct: 679 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLADGDKVISM 735

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 736 AILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGTDAELTEELYQELKARE 795

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  +++G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 796 ETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQILLVS 855

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 856 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISEADSDEEN 904


>gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
 gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
          Length = 913

 Score =  943 bits (2437), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/903 (62%), Positives = 689/903 (76%), Gaps = 4/903 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +E     +     GI  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   SEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMH 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ II GPDFPTG +ILGR GI++AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIILGRQGIRSAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRGSIV+RG   I+    DRE IV++EIPYQVNKA+M+E+IAELVREK+I  I+DLRD
Sbjct: 244 HLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR+G+RVV+ELKR A  +V+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L  F
Sbjct: 304 ESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P  AR  LM R 
Sbjct: 364 IAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 424 WPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + LDIL SR+R+  IIK EL +VK E  TPRRT IVE   ++EDED I REDMVVT
Sbjct: 484 IEIADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW  L V+FAT  G VRRNK
Sbjct: 604 KVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF+GR S
Sbjct: 664 LSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +GVRGI+LAKGD+VIS++I+ H DA   ER  Y+K   A RR  +G+  E      ++  
Sbjct: 724 MGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783

Query: 782 EGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +    + E R  E+   EQF+LTV+ +G+GKR+SS++FR+S R GKGIRATD +K+ E
Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGE 843

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA DE VVSVE I
Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADDEHVVSVEHI 903

Query: 898 RES 900
           RE 
Sbjct: 904 RED 906



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 88/258 (34%), Gaps = 31/258 (12%)

Query: 511 ELDTPRRTRIVE----GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+         + D       D V+  +  G   R P++  R    R   G
Sbjct: 666 DFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMG 725

Query: 566 RSGVVMRDED-----FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL-I 619
             G+ +   D      +   F  +      +    G +              A G+ +  
Sbjct: 726 VRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAI-----------RRAATGEDIEP 774

Query: 620 NILSLNQGERITTIMPFPED---ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA- 675
              +    E   T +  PE    E      +V+  T  G  +R+   +F    R GK   
Sbjct: 775 EEATPEADEAAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIR 834

Query: 676 ----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
                KL     +++       + I+L +  GQ +R P+  IR+   R S GVR  + A 
Sbjct: 835 ATDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRI-TSRASKGVRVFNTAD 893

Query: 732 GDQVISMAIVLHADADYD 749
            + V+S+  +     + +
Sbjct: 894 DEHVVSVEHIREDGENGN 911



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 94/315 (29%), Gaps = 63/315 (20%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
            L +  A     +R  + S      R   ++    ++D  ++      ++     +  G 
Sbjct: 391 GLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKD--VAAMITLIDDPRHRVSPDGT 448

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                  A  +   R     R  +L + +    +  +    ADY + +     + A  + 
Sbjct: 449 ARLSMEQAKAILDLRLQ---RLTALGREEISEELDKLAIEIADYLDILRSRARVQAIIKT 505

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                +   +    + +     E   ++L  +E  ++TVS  G+ KR     +R   R G
Sbjct: 506 ELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQKRGG 565

Query: 825 KGIRATDVSKIN--------------------------------------EIGALVAVFP 846
           KG         +                                         AL+ + P
Sbjct: 566 KGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILP 625

Query: 847 VNDND------------------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           ++  +                   ++  +  GT+ R  +++     R   G++     + 
Sbjct: 626 LDQGERITTIMPLPEDESSWAALDVMFATTSGTVRRNKLSDFVDVRR--SGIIAMKLGEG 683

Query: 889 ERVVSVERIRESEIV 903
           E +V V+   E + V
Sbjct: 684 ESIVDVQICTERDDV 698


>gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278]
 gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp.
           ORS278]
          Length = 916

 Score =  943 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/909 (61%), Positives = 690/909 (75%), Gaps = 3/909 (0%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E     +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM +
Sbjct: 5   EDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYE 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G EWNK Y K AR  G+V+GKYHPHG+ ++Y AL RMAQD+S+R+ LI+GQGNFGSVDG
Sbjct: 65  NGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFGSVDG 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL K A  LLDDL KDTVDF+PNYD S +EP VL A++PN+LVNG GGI
Sbjct: 125 DMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNGAGGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+D C+A+ DNP + +D L +II GPDFPTG +ILGR GI++AY 
Sbjct: 185 AVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIILGRAGIRSAYH 244

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSIV+RG   I+    DRE I++TEIPYQVNKA+M+E+IAELVREK+I  I+DLRDE
Sbjct: 245 TGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISDLRDE 304

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G+RVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L+ FV
Sbjct: 305 SDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGRPQTMNLKDLLQVFV 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W
Sbjct: 365 AFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLMSRDW 424

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A D+  +I LIDD  + I  DGT  LS  Q +AIL+LRL RLT LGR++I +EL+ L +
Sbjct: 425 PAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELDKLAV 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI + LDIL SR+R+  I+K EL ++K E  TPRRT I E   +MEDED I REDMVVTV
Sbjct: 485 EIADYLDILRSRARVQDIVKTELSAIKAEFATPRRTVIAEQEGEMEDEDLIQREDMVVTV 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KRVPLS YRAQRRGGKGR+G+  R+EDFV+ LF+ STHT VLFFSS G VYKEK
Sbjct: 545 SHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           VWRLPI +P  RGKALINIL L QGERITTIMP PEDESSW NL V+FAT  GNVRRNKL
Sbjct: 605 VWRLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRRNKL 664

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF+ + RSG IAMKLD  +EI++V+ CT+ +D+LLT   GQC+RFP++ +RVF GR S+
Sbjct: 665 SDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSM 724

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+LA+GD++IS+ I+ H +   DER  Y+K   A     + +    T  +  ++  
Sbjct: 725 GVRGIALAEGDKLISLTILRHVETTSDERTAYLKMRRAMSGETAAEEPVETEGEEAAAGA 784

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S+ER  E+  +EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  G LV
Sbjct: 785 IQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVN--NRNGKLV 842

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESE 901
           A FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE I  E+E
Sbjct: 843 ASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIGEEAE 902

Query: 902 IVDEAESTE 910
             + A  TE
Sbjct: 903 NGNGANGTE 911


>gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
 gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
          Length = 938

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/907 (60%), Positives = 693/907 (76%), Gaps = 5/907 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +   +  +     I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M 
Sbjct: 6   DQDNSTPTDGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMH 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVD
Sbjct: 66  ENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDP AA RYTECRL+K AH LLDD+ K+TVDF+ NYD S  EPVVL A++PN+LVNG GG
Sbjct: 126 GDPAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGG 185

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D  +AV++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY
Sbjct: 186 IAVGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMILGRSGIRSAY 245

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            T RGSIV+R    +E+   DR  ++VTEIPYQVNK+ M+EKIAELVR+KRI  I+D+RD
Sbjct: 246 ETARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRD 305

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKR A  DVILNQLYR++ LQ+ F  N+VALNG KPE+  L  +L+AF
Sbjct: 306 ESDRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALNGGKPEQMNLSDMLRAF 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V+FREEV+ RRT+YLL KARDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+
Sbjct: 366 VSFREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMERN 425

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D++ LI LIDD  + +  DGT  LSE Q RAIL+LRL RLT +GRD+I  ELN +G
Sbjct: 426 WPAKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIG 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI + L+IL SR+R+  I++ E+L +K E  TPRRT I+EG  D ++ED I REDMVVT
Sbjct: 486 AEISDYLEILRSRARIQEIVRNEMLEIKQEFATPRRTEIIEGGPDFDEEDLIQREDMVVT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK 
Sbjct: 546 VSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKM 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+G P +RGKALIN+L L QGE+IT+I+P PEDE SW NL V+FAT  G +RRNK
Sbjct: 606 KVWRLPLGGPTSRGKALINLLPLEQGEQITSILPLPEDEDSWANLDVMFATIRGTIRRNK 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ INR+GKIAMKL+  D I+ V+TC++ +D++LTT  GQC+RFP++ +RVFAGRNS
Sbjct: 666 LSDFVNINRNGKIAMKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTDVRVFAGRNS 725

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGVRGI LA  D+VISM I+ H D   +ER  Y+K   A R     +         +  V
Sbjct: 726 VGVRGIRLADEDRVISMQILHHIDVSAEERAAYLKLSRAMRGEADENGN---GADEEGVV 782

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            G++ +ER  ++   EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V+  N  G L
Sbjct: 783 AGDLPQERYAQMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRN--GGL 840

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++ FPV D+ QI+LV+D G LIR PV+ IRIA RAT+GV++F TA DE+VV+VE I E +
Sbjct: 841 ISSFPVEDSHQIMLVTDGGQLIRCPVDGIRIAGRATQGVIVFKTAADEKVVAVEGISEVD 900

Query: 902 IVDEAES 908
             D  E 
Sbjct: 901 EDDVLED 907



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 102/304 (33%), Gaps = 55/304 (18%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           EDED     D++   +  G ++R  LS +    R GK    + + D D +  +   S H 
Sbjct: 642 EDEDSWANLDVMFA-TIRGTIRRNKLSDFVNINRNGK--IAMKLEDGDGIVGVDTCSEHD 698

Query: 588 SVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI-----MPFPEDE- 640
            V+  ++ G   +  V  + +     + G   +  + L   +R+ ++     +    +E 
Sbjct: 699 DVMLTTNFGQCIRFPVTDVRVFAGRNSVG---VRGIRLADEDRVISMQILHHIDVSAEER 755

Query: 641 --------------------------------------SSWNNLYVVFATKHGNVRRNKL 662
                                                  S     ++  +++G  +R   
Sbjct: 756 AAYLKLSRAMRGEADENGNGADEEGVVAGDLPQERYAQMSAAEQIILTISENGYGKRTSS 815

Query: 663 SDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++    R GK    +        ++S       + I+L T  GQ +R P+  IR+ AGR
Sbjct: 816 FEYRVTGRGGKGITAMAVNSRNGGLISSFPVEDSHQIMLVTDGGQLIRCPVDGIRI-AGR 874

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV     A  ++V+++  +   D D                    D    T   +++
Sbjct: 875 ATQGVIVFKTAADEKVVAVEGISEVDEDDVLEDGLEGEAEGSAEPGVSDAGNDTIDGDET 934

Query: 780 SVEG 783
             E 
Sbjct: 935 PPEA 938


>gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 902

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/883 (66%), Positives = 720/883 (81%), Gaps = 2/883 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL 
Sbjct: 61  YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA
Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE
Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+L
Sbjct: 241 AIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRA
Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD  +T+  D
Sbjct: 361 HVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNED 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E
Sbjct: 421 NTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGK
Sbjct: 481 MIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RGKALIN+L L
Sbjct: 541 GRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683
            QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL D  DE
Sbjct: 601 QQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H
Sbjct: 661 ILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHH 720

Query: 744 ADADYDERICYMKHMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            DA   ER  Y+K   A+RR   + D ++I  +  D   E  +SE+R QELK +E+ +LT
Sbjct: 721 VDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLT 780

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           VSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI+LVSD G L
Sbjct: 781 VSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQL 840

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           IRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 841 IRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 883



 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 604 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 658

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 659 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 715

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 716 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 775

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 776 ETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 835

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 836 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 884


>gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 913

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/902 (62%), Positives = 688/902 (76%), Gaps = 4/902 (0%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E     +     GI  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M +
Sbjct: 5   EDTKPEEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYE 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDG
Sbjct: 65  NGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDG 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGI
Sbjct: 125 DMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNGAGGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+D CVA+ID+P + +D L++II GPDFPTG +ILGR GI++AY 
Sbjct: 185 AVGMATNIPPHNLGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIILGRQGIRSAYH 244

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRGSIV+RG   I+    DRE IVV+EIPYQVNKA+M+E+IAELVREK+I  I+DLRDE
Sbjct: 245 LGRGSIVMRGKVSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISDLRDE 304

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR+G+RVV+ELKR A  +++LNQLY+YT LQ+ F  NMVAL+  +P+   L  +L  F+
Sbjct: 305 SDREGFRVVVELKRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGRPQVMNLKDLLTLFI 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P  AR  LM R W
Sbjct: 365 AFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDW 424

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L I
Sbjct: 425 PAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAI 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI + LDIL SR+R+  IIK EL +VK E  TPRRT IVE   ++EDED I REDMVVTV
Sbjct: 485 EIADYLDILRSRARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTV 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VYKEK
Sbjct: 545 SHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           VWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW +L V+FAT  G VRRNKL
Sbjct: 605 VWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVRRNKL 664

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF+GR S+
Sbjct: 665 SDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSM 724

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+LAKGD+VIS++I+ H DA   ER  Y+K   A RR  +G+  E      ++   
Sbjct: 725 GVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEA 784

Query: 783 GN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            +    + E R  E+   EQF+LTV+  G+GKR+SS++FR+S R GKGIRATD +K+ EI
Sbjct: 785 AHTDLSLPEGRYVEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEI 844

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA  E VVSVE IR
Sbjct: 845 GHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADGEHVVSVEHIR 904

Query: 899 ES 900
           E 
Sbjct: 905 ED 906



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 31/258 (12%)

Query: 511 ELDTPRRTRIVE----GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+         + D       D V+  +  G   R P++  R    R   G
Sbjct: 666 DFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMG 725

Query: 566 RSGVVMRDED-----FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL-I 619
             G+ +   D      +   F  +      +    G +              A G+ +  
Sbjct: 726 VRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAI-----------RRAATGEDIEP 774

Query: 620 NILSLNQGERITTIMPFPED---ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA- 675
              +    E   T +  PE    E      +V+  T +G  +R+   +F    R GK   
Sbjct: 775 EEATPEADEAAHTDLSLPEGRYVEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIR 834

Query: 676 ----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
                KL     +++       + I+L +  GQ +R P+  IR+   R S GVR  + A 
Sbjct: 835 ATDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRI-TSRASKGVRVFNTAD 893

Query: 732 GDQVISMAIVLHADADYD 749
           G+ V+S+  +     + +
Sbjct: 894 GEHVVSVEHIREDGENGN 911



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 95/315 (30%), Gaps = 63/315 (20%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
            L +  A     +R  + S      R   ++    ++D  ++      ++     +  G 
Sbjct: 391 GLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKD--VAAMITLIDDPRHRVSPDGT 448

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                  A  +   R     R  +L + +    +  +    ADY + +     + A  + 
Sbjct: 449 ARLSMEQAKAILDLRLQ---RLTALGREEISEELDKLAIEIADYLDILRSRARVQAIIKT 505

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G  +   +    + +     E   ++L  +E  ++TVS  G+ KR     +R   R G
Sbjct: 506 ELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQKRGG 565

Query: 825 KGIRATDVSKIN--------------------------------------EIGALVAVFP 846
           KG         +                                         AL+ + P
Sbjct: 566 KGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILP 625

Query: 847 VNDND------------------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           ++  +                   ++  +  GT+ R  +++     R   G++     + 
Sbjct: 626 LDQGERITTIMPLPEDESSWADLDVMFATTSGTVRRNKLSDFVDVRR--SGIIAMKLGEG 683

Query: 889 ERVVSVERIRESEIV 903
           E +V V+   E + V
Sbjct: 684 ESIVDVQICTERDDV 698


>gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42]
          Length = 908

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 620/872 (71%), Positives = 736/872 (84%), Gaps = 1/872 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAI
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDF
Sbjct: 61  YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC+A+I++P I+L
Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GDREQI++TEIPY
Sbjct: 181 PELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT L
Sbjct: 241 QVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIA
Sbjct: 301 QTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           VAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q
Sbjct: 361 VANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE  
Sbjct: 421 ARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDEFG 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
           TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RD
Sbjct: 481 TPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRD 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           EDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI
Sbjct: 541 EDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQ 692
           +P PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  DEILSVETCT 
Sbjct: 601 LPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTD 660

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+  ER 
Sbjct: 661 RDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERA 720

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
            Y+K  +A+RR I  D E+I  +  + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+
Sbjct: 721 AYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRS 780

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRI
Sbjct: 781 SSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRI 840

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ASRATKGV IFSTAKDE+VVSVERI E E  D
Sbjct: 841 ASRATKGVTIFSTAKDEKVVSVERISEPEEDD 872


>gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/884 (61%), Positives = 678/884 (76%), Gaps = 6/884 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK+Y K AR  G+V+GK
Sbjct: 1   MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL K A  LLD
Sbjct: 61  YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D C+A
Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG   IE    DRE
Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRAAYQTGRGSIVMRGKVEIETVRKDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V+EIPYQVNKA M+E+IAELVREK+I  I DLRDESDR G+RVVIEL+R A  +V+L
Sbjct: 241 AIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLY++T LQ+ F  NMVAL G +P+   L  +L  FVAFRE+VV RRTK+LLNKARDRA
Sbjct: 301 NQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A+D+  +I LIDD  + +  D
Sbjct: 361 HILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNPD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LS  Q +AIL+LRL RLT LGR++I  EL+ L +EI + L+IL SR+R+  I+K E
Sbjct: 421 GTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVKTE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  VK E  TPRRT I E   ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK
Sbjct: 481 LGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+  P  RGKALINIL L
Sbjct: 541 GRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QGERITTIMP PEDE+SW+ L V+FAT  GNVRRNKLSDF+ + RSG IAMKLD  + I
Sbjct: 601 EQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAI 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR S+GVRGI+L+ GD VIS++I+ H 
Sbjct: 661 VDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHF 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQELKLKEQFI 800
           +A   ER  Y+K   A RR  +G+  E        + EG+    +S+ER  E+   EQF+
Sbjct: 721 EATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFV 780

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT+SE G+GKRTSS+++R + R GKGI A  V+  N  G LVA FPV D+DQI+LV+D G
Sbjct: 781 LTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRN--GKLVASFPVEDSDQIMLVTDNG 838

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            LIR PV  IR+A R+T+GV++F+TA DE+VVSVERI E++  +
Sbjct: 839 QLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDDGE 882



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 97/265 (36%), Gaps = 21/265 (7%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G V+    ++F    R+     + +  DE    +   +E+ ++  +  G   R P+S
Sbjct: 479 TELGEVK----AEFATPRRTVIAEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLS 530

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLI 765
             R    R   G  G++  + D V  + +      VL   +        +  +       
Sbjct: 531 TYRA-QRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNG 589

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            G                 I      E    E  ++  +  G  +R    DF    RSG 
Sbjct: 590 RGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSG- 648

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFS 884
            I A  + +     A+V V    + D ++L +  G  IR PV ++R+ + R + GV   +
Sbjct: 649 -IIAMKLDEGE---AIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIA 704

Query: 885 TAKDERVVSVERIRESEIVDEAEST 909
            +  + V+S+  +R  E      ST
Sbjct: 705 LSSGDTVISLSILRHFEATPAERST 729



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 94/256 (36%), Gaps = 29/256 (11%)

Query: 511 ELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+    +    + D       D V+  +  G   R P+   R    R   G
Sbjct: 640 DFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMG 699

Query: 566 RSGVVMRDEDFVTDL-----FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK---A 617
             G+ +   D V  L     F  +      +    G +              A G+    
Sbjct: 700 VRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAI-----------RRAATGEENEP 748

Query: 618 L-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           +        +G+    +      E S +  +V+  +++G  +R    ++    R GK  +
Sbjct: 749 VETPEAEAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIV 808

Query: 677 KLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +       ++++       + I+L T  GQ +R P+  IRV AGR++ GV   + A  +
Sbjct: 809 AMSVNSRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRV-AGRSTQGVIVFNTADDE 867

Query: 734 QVISMAIVLHADADYD 749
           +V+S+  +   D   +
Sbjct: 868 KVVSVERIPETDDGEN 883


>gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 933

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 601/914 (65%), Positives = 730/914 (79%), Gaps = 5/914 (0%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+       +    GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +
Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRGSIV+RG  +IE+   DRE I++TE+PYQVNK++M+EK+AELVR+KRI  I+D+
Sbjct: 241 AYSTGRGSIVMRGRVNIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F  NMVALNG KPE   L  +LK
Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFVAFREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+
Sbjct: 361 AFVAFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W + D++ LI LIDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN+
Sbjct: 421 RRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNT 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDILSSR+R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMV
Sbjct: 481 IGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGSDMEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS+YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW  LYV+FAT  G VRR
Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           N LSDF+Q+NR+GKIAMKL +  DEIL VETCT ++D+LLT   GQC+RF +  +RVF  
Sbjct: 661 NDLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSL 775
           RNSVGVRGI++A+ D++ISM+++ H DA   ER  Y+K  +A+RRL    +G+ EEI   
Sbjct: 721 RNSVGVRGITMAETDRIISMSVIEHVDASPAERAAYLKRAAAERRLATETAGEEEEIALT 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   E  +S+ R +ELK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK 
Sbjct: 781 NEEIGEETELSDSRYEELKAHEQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKA 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE
Sbjct: 841 AEIGRLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900

Query: 896 RIRESEIVDEAEST 909
           RI E +  +E+E T
Sbjct: 901 RISEPQADEESEET 914


>gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
 gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
          Length = 927

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/915 (64%), Positives = 719/915 (78%), Gaps = 8/915 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTPHPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILG +G++ A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIILGLSGVRAA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVEIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELK+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAMDVAPLIKLIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LDIL+SR R++ I+K EL ++++E  TPRRT    G  +ME ED I  EDMVV
Sbjct: 481 GVDIADYLDILASRVRIMCIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRN
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE---ITSLKN 777
           SVGVRGI+LAKGD+VISM I+ H +A   ER  Y+K +  +RR    D +    +T  + 
Sbjct: 721 SVGVRGINLAKGDKVISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEE 780

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D   E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  E
Sbjct: 781 DGGAETELTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAE 840

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV   DQI+LVSD G LIRVPV  IR A R+TKGV IF+TAK ERVVSVERI
Sbjct: 841 IGKLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERI 900

Query: 898 RESE-----IVDEAE 907
            E E     + DE E
Sbjct: 901 SEPEDDTSSLDDEGE 915


>gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
 gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
          Length = 904

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/910 (61%), Positives = 698/910 (76%), Gaps = 10/910 (1%)

Query: 1   MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+    +D+      I  VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 1   MTDPKDPADDSSSPADIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 61  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILG+ GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIILGKQGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVR+K+I  I+DL
Sbjct: 241 AYHLGRGSIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L 
Sbjct: 301 RDESDRDGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ ++ LIDD  + I +DGT  LS  Q +AIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RDWPAKDVETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+ GI++ EL +VK+E  TPRRT IV+   ++EDED I REDMV
Sbjct: 481 LAVEIADYLDILRSRARVQGIVRDELTAVKNEFATPRRTVIVDQEGEVEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL + QGERITTIMP PEDESSW+ L V+FAT  GNVRR
Sbjct: 601 KEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+   + +D+LLT   GQC+RFP++ +RVF GR
Sbjct: 661 NKLSDFVDVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L  GD++IS+ I+ H D + DER  Y++  +A RR   G  +E  +   ++
Sbjct: 721 TSMGVRGINLGDGDKLISLTILRHMDVNADERAAYLRRANAVRR--GGVEDEAGTDSEEA 778

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    + E+R  E+   EQF+LT+SE G+GKRTSSY++R + R GKGI A  V+  N  G
Sbjct: 779 TGAIELGEQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRN--G 836

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D+DQI+LV+DKG LIR PV +IRIA R+T+GV +F+T+ DERVVSVE +  
Sbjct: 837 KLVASFPVEDSDQIMLVTDKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVEHL-- 894

Query: 900 SEIVDEAEST 909
               DE E +
Sbjct: 895 ---TDEGEQS 901



 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 110/299 (36%), Gaps = 27/299 (9%)

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD----ELDTPRRTRIV- 521
               + +  E       I    +  SS S L  +      +V+     +    RR+ I+ 
Sbjct: 617 KALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRRNKLSDFVDVRRSGIIA 676

Query: 522 ---EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577
              +    + D       D V+  +  G   R P++  R  Q R   G  G+ + D D +
Sbjct: 677 MKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGRTSMGVRGINLGDGDKL 736

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L I+     +   +     Y  +   +  G  +          +    E  T  +   
Sbjct: 737 ISLTILR---HMDVNADERAAYLRRANAVRRGGVEDE--------AGTDSEEATGAIELG 785

Query: 638 ED---ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCT 691
           E    E S N  +V+  +++G  +R    ++    R GK  + +       ++++     
Sbjct: 786 EQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRNGKLVASFPVE 845

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + I+L T  GQ +R P+  IR+ AGR++ GV   + +  ++V+S+  +        E
Sbjct: 846 DSDQIMLVTDKGQLIRCPVEDIRI-AGRSTQGVTVFNTSDDERVVSVEHLTDEGEQSGE 903


>gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060]
 gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060]
          Length = 911

 Score =  937 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/904 (61%), Positives = 698/904 (77%), Gaps = 9/904 (0%)

Query: 1   MT---EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT   ++  +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL
Sbjct: 1   MTLAEKNDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M + G   ++KYVK ARI G+VMG+YHPHG+ +IYDAL RMAQD+++R++L++GQGNF
Sbjct: 61  YSMYENGYLPDRKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGDPPAA RYTE RL K A  LL+D+ K+TVDF PNYD S  EP VL AR+PN+LVN
Sbjct: 121 GSIDGDPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGEV+DGCVA+ID+P + ++AL EII GPDFPTG +ILGR G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLILGRAGT 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRGS+V+R  SH+E+   +RE +V TEIPYQVNKA+++EKIA+LVREKRI  +A
Sbjct: 241 RAAYMTGRGSVVMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           DLRDESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +
Sbjct: 301 DLRDESDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDL 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++AF+ FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR  L
Sbjct: 361 IQAFIDFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREAL 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R W A+DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT LGRD++ +EL
Sbjct: 421 MSRDWPAADIAPLIALVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDEL 480

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  EI + LDIL SR+R+LGI+K EL  V+ E  TPR+T I +   ++EDED I RED
Sbjct: 481 KQLADEIADYLDILRSRARILGIVKAELAEVRAEYATPRKTEIQDWDSNVEDEDLIQRED 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTVSH GY+KRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G 
Sbjct: 541 MVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQ 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGN 656
            YKEKVWRLP+ +P ARGKAL+NIL L+Q GERITTIMP PEDE+SW  L V+FAT  GN
Sbjct: 601 AYKEKVWRLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGN 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRRNKLSDF+Q+NR+GKIAMKLD  D I+ VE CT+ +D+LLTT  GQC+RFP++ +RVF
Sbjct: 661 VRRNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVF 720

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GVRGI+L K D+VISM I+ H +A  +ER  Y++  +A RR      +  T+ +
Sbjct: 721 KGRDSTGVRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAPE 780

Query: 777 NDSSVEG---NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            D        ++ +ER  ++   EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+
Sbjct: 781 ADGEETTASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVN 840

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+TAKDERVVS
Sbjct: 841 ARN--GHLVASFPVEPSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVS 898

Query: 894 VERI 897
           VE I
Sbjct: 899 VEHI 902



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 18/251 (7%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++    ++       +  DE    +   +E+ ++  +  G   R P+S  R    R   G
Sbjct: 514 EYATPRKTEIQDWDSNVEDE----DLIQREDMVVTVSHAGYIKRVPLSTYRA-QRRGGKG 568

Query: 724 VRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMS----AQRRLISGDTEEITSLK 776
             G++    D V  + +            +   Y + +     A           I  L 
Sbjct: 569 RSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPLAAPNARGKALVNILPLD 628

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   I      E   +   ++  +  G  +R    DF   NR+GK   A  + + +
Sbjct: 629 QAGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFVQVNRNGK--IAMKLDEGD 686

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVE 895
               +V V    + D ++L +  G  IR PV ++R+   R + GV   +  KD+RV+S+ 
Sbjct: 687 ---HIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTGVRGINLGKDDRVISMT 743

Query: 896 RIRESEIVDEA 906
            +R  E   E 
Sbjct: 744 ILRHFEATPEE 754


>gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 931

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 602/914 (65%), Positives = 733/914 (80%), Gaps = 5/914 (0%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+       +    GI  +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +
Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRGSIV+RG  +IE+   DRE I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+
Sbjct: 241 AYSTGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F  NMVALNG KPE  TL  +LK
Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV+FREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+
Sbjct: 361 AFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ LI LIDD  + I +DGT  LSE Q RAILELRL RLT LGRD+I +ELNS
Sbjct: 421 RRWPAGDVESLILLIDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNS 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDILSSR+R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMV
Sbjct: 481 IGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS+YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW  L V+FAT  G VRR
Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF+Q+NR+GKIAMKL +  DEIL VETCT  +D+LLT   GQC+RF +  +RVF  
Sbjct: 661 NKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS---GDTEEITSL 775
           RNSVGVRGI++A+ D++ISM+++ + DA   ER  Y+K  +A+RRL +   G+ EEI   
Sbjct: 721 RNSVGVRGITMAETDRIISMSVIENVDASPAERAAYLKRAAAERRLAAGANGEEEEIALT 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   E  +S+ER + LK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK 
Sbjct: 781 NEEIGEEAELSDERYEFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKT 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE
Sbjct: 841 AEIGRLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900

Query: 896 RIRESEIVDEAEST 909
           RI E +  +E+E T
Sbjct: 901 RISEPQSDEESEET 914


>gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
 gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
          Length = 914

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/903 (61%), Positives = 689/903 (76%), Gaps = 8/903 (0%)

Query: 1   MT--EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT  E   +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTLAEKDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G    +KYVK ARI G+VMG+YHPHG+ +IYDAL RMAQD+++RL+L++GQGNFG
Sbjct: 61  SMYENGYLPERKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGDPPAA RYTE RL K A  LL+D+ K+TVDF PNYD S  EP VL AR+PN+LVNG
Sbjct: 121 SIDGDPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV++GC+A+ID+P + ++ L EII GPDFPTG  ILGR G +
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQILGRAGTR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+++R  SH+E+   +RE +V TEIPYQVNKA+++EKIAELVR+KRI  ++D
Sbjct: 241 AAYMTGRGSVIMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  ++
Sbjct: 301 LRDESDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLI 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR  LM
Sbjct: 361 QAFIDFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A DI  LI L+DD  + +  DGT  LS+ Q RAIL+LRL RLT LGRD++ +EL 
Sbjct: 421 ARDWPAVDIAPLIALVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELK 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  EI + LDIL SR+R+LGI+K EL  V+ E  TPRRT I +    +EDED I REDM
Sbjct: 481 QLADEIADYLDILRSRARILGIVKAELAEVRAEFATPRRTEIQDWDSTVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  
Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQA 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           YKEKVWRLP+ +P ARGKAL+NIL L+  GERITTIMP PEDE+SW  L V+FAT  G+V
Sbjct: 601 YKEKVWRLPLAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHV 660

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RRNKLSDF+Q+NR+GKIAMKLD  D I+ VE CT+ +D+LLTT  GQC+RFP++ +RVF 
Sbjct: 661 RRNKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFK 720

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR+S GVRGI+L  GD+VISM I+ H +A  +ER  Y++  +A RR      E   + + 
Sbjct: 721 GRDSTGVRGINLGSGDRVISMTILRHFEATPEERQAYLRRANADRRATGEAIELPATPEA 780

Query: 778 DSSVEG---NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           D        ++ +ER   +   EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+ 
Sbjct: 781 DGEETAASIDLDQERYIAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNT 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+TAKDERVVSV
Sbjct: 841 RN--GHLVASFPVETSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSV 898

Query: 895 ERI 897
           E I
Sbjct: 899 EHI 901


>gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
          Length = 918

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/906 (61%), Positives = 674/906 (74%), Gaps = 9/906 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM 
Sbjct: 6   TDDRKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMY 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVD
Sbjct: 66  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GG
Sbjct: 126 GDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 185

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+I++P + +D L +II GPDFPTG +ILGR GI+ AY
Sbjct: 186 IAVGMATNIPPHNLGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIILGRAGIRLAY 245

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IAELVREK+I  I+DLRD
Sbjct: 246 HTGRGSIVMRGKVSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 305

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVVIEL+R A ADV+LNQLYR+T LQ+ F  NMVAL+  +P    L  +L  F
Sbjct: 306 ESDRDGFRVVIELRRDAVADVVLNQLYRFTPLQTNFGANMVALDAGRPLLMNLKDLLTLF 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           VAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 366 VAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRD 425

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 426 WPAQDVAAMITLIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLA 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           +EI + L+IL SR+R+  IIK EL +VK E  TPRRT I+E   ++EDED I REDMVVT
Sbjct: 486 VEIADYLEILRSRARVQTIIKDELAAVKAEFATPRRTEIIEQEGEVEDEDLIQREDMVVT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQRRGGKGR+G+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 546 VSHAGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKE 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+  P  RGKALINIL L QGERI TIMP PEDESSW    V+FAT  G VRRNK
Sbjct: 606 KVWRLPLAPPNGRGKALINILPLEQGERINTIMPLPEDESSWAEFDVMFATTRGTVRRNK 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKLD  + I+ V+ CT  +D+LLT   GQC+RF ++ +RVF  R S
Sbjct: 666 LSDFVDVRRSGIIAMKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTDVRVFQSRAS 725

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +GVRG++LA GDQVIS+ I+ H DA   ER  Y+K   A RR  +G+  E + +   +  
Sbjct: 726 MGVRGMALANGDQVISLTILRHFDATPAERTTYLKQSGAIRRAATGEEVEPSEVVEAAVE 785

Query: 782 E-------GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                     +S ER  E+   EQF+LT+SE GFGKRTSS+++R + R GKGI A  V+ 
Sbjct: 786 PEEETDGLAALSPERYAEMSANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNA 845

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV + DQI+LV+DKG LIR PV  IRI  R+T+GV +F+TA+DE VVSV
Sbjct: 846 RN--GKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSV 903

Query: 895 ERIRES 900
           E I E 
Sbjct: 904 EHIGEE 909



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 98/254 (38%), Gaps = 22/254 (8%)

Query: 511 ELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+    +    + D       D V+  +  G   R  ++  R  Q R   G
Sbjct: 668 DFVDVRRSGIIAMKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTDVRVFQSRASMG 727

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G+ + + D V  L      T +  F +        + +       A G+ +     + 
Sbjct: 728 VRGMALANGDQVISL------TILRHFDATPAERTTYLKQSGAIRRAATGEEVEPSEVVE 781

Query: 626 QG-------ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                    + +  + P    E S N  +V+  +++G  +R    ++    R GK  + +
Sbjct: 782 AAVEPEEETDGLAALSPERYAEMSANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAM 841

Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
                  ++++     +E+ I+L T  GQ +R P+  IR+   R++ GV   + A+ + V
Sbjct: 842 SVNARNGKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVG-RSTQGVTVFNTAEDEHV 900

Query: 736 ISMAIVLHADADYD 749
           +S+  +     + +
Sbjct: 901 VSVEHIGEEAENGN 914



 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 64/260 (24%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    D    E   Y++ + ++ R+ 
Sbjct: 443 HRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQ 502

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+ ++K +      + +     E   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 503 TIIKDELAAVKAEFATPRRTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRA 562

Query: 820 SNRSGKGIRATDVSKIN--------------------------------------EIGAL 841
             R GKG       + +                                         AL
Sbjct: 563 QRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKAL 622

Query: 842 VAVFPVNDND------------------QIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           + + P+   +                   ++  + +GT+ R  +++     R   G++  
Sbjct: 623 INILPLEQGERINTIMPLPEDESSWAEFDVMFATTRGTVRRNKLSDFVDVRR--SGIIAM 680

Query: 884 STAKDERVVSVERIRESEIV 903
                E +V V+   + + V
Sbjct: 681 KLDDGEAIVDVQICTDRDDV 700


>gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
          Length = 927

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/910 (61%), Positives = 681/910 (74%), Gaps = 13/910 (1%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   TDDNKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GG
Sbjct: 124 GDSAAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIILGRAGIRLAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSIV+RG   IE T  DRE I+++EIPYQVNKA M+E+IAELVREK+I  I+DLRD
Sbjct: 244 HTGRGSIVMRGKVAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L+ F
Sbjct: 304 ESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLRLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           VAFRE+VV RRTK+LLNKARDRAHVLVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 364 VAFREQVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  + + +DGT  LS  Q +AIL+LRLARLT LGR++I  EL+ L 
Sbjct: 424 WEAKDVAAMITLIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + L+IL SR+R+  IIK+EL +VK E  TPR+T I+E   ++EDED I REDMVVT
Sbjct: 484 IEIADYLEILRSRARVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLPI  P  RGKALINIL L QGERITTIMP PEDESSW  L V+FAT  G VRRNK
Sbjct: 604 KVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKLD  + I+ V+ CT  +D+LLT   GQC+RF ++ +RVF  R S
Sbjct: 664 LSDFVDVRRSGIIAMKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAVTDVRVFQSRAS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT-------- 773
           +GVRG++LA GDQVIS+ I+ H DA+  ER  Y+K   A RR  +G+  E          
Sbjct: 724 MGVRGMALANGDQVISLTILRHFDANPAERSTYLKQSGAIRRAATGEEAEAVEGSELAAE 783

Query: 774 ---SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              +   +     ++S +R  E+   EQF+LT+SE GFGKRTSS+++R + R GKGI A 
Sbjct: 784 VADAEPEEVDAIASLSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAM 843

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V+  N  G LVA FPV + DQI+LV+DKG LIR PV  IRI  R+T+GV +F+TA+DE 
Sbjct: 844 AVNARN--GKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEH 901

Query: 891 VVSVERIRES 900
           VVSVERI E 
Sbjct: 902 VVSVERIGED 911



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 96/315 (30%), Gaps = 63/315 (20%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
            L +  A     +R  + S      R   +A   +++D  ++      ++        G 
Sbjct: 391 GLAIAVANIDEIIRVIRTSPDPATARDTLMARDWEAKD--VAAMITLIDDPRHRLNADGT 448

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                  A  +   R +   R  +L + +    +  +    ADY E +     +    + 
Sbjct: 449 ARLSFEQAKAILDLRLA---RLTALGREEISEELDKLAIEIADYLEILRSRARVQTIIKE 505

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                +   +    +++     E   ++L  +E  ++TVS  G+ KR     +R   R G
Sbjct: 506 ELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGG 565

Query: 825 KGIRATDVSKIN--------------------------------------EIGALVAVFP 846
           KG       + +                                         AL+ + P
Sbjct: 566 KGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAPPNGRGKALINILP 625

Query: 847 VNDND------------------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +   +                   ++  + +GT+ R  +++     R   G++     + 
Sbjct: 626 LEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNKLSDFVDVRR--SGIIAMKLDEG 683

Query: 889 ERVVSVERIRESEIV 903
           E +V V+   + + V
Sbjct: 684 EAIVDVQICTDRDDV 698


>gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
          Length = 917

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/906 (60%), Positives = 682/906 (75%), Gaps = 10/906 (1%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             + +    I  +SI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM + G E
Sbjct: 9   PGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFE 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVDGD PA
Sbjct: 69  WNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPA 128

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GGIAVGM
Sbjct: 129 AMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGM 188

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV+D C+A+I++P + +D L+ II GPDFPTG +ILGR GI+ AY TGRG
Sbjct: 189 ATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIILGRAGIRLAYHTGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+DLRDESDR 
Sbjct: 249 SIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRD 308

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P    L  +L  FVAFRE
Sbjct: 309 GFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPHLMNLRDLLTLFVAFRE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTKYLL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A+D
Sbjct: 369 QVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMSRDWPAAD 428

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L +EI +
Sbjct: 429 VAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLALEIAD 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL SR+R+  I+K EL++VK E  TPR+T I+E   ++EDED I REDMVVTVSH G
Sbjct: 489 YLDILRSRARVQTIVKDELIAVKTEFATPRKTMIIEQEGEVEDEDLIQREDMVVTVSHAG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRL
Sbjct: 549 YVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRL 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PI  P  RGKALINIL L QGERITTIMP PEDE SW  L V+FAT  GNVRRNKLSDF+
Sbjct: 609 PIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRRNKLSDFV 668

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF GR S+GVRG
Sbjct: 669 DVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFTGRTSMGVRG 728

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE---- 782
           I+LA GD+VIS+ I+ H +A   ER  Y+K   A RR   G+  +++ +   ++      
Sbjct: 729 IALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTDVSEVSEVTAEAESEE 788

Query: 783 ----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +S +R  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+  N  
Sbjct: 789 AEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMSVN--NRN 846

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F TA DE+VVSVE I 
Sbjct: 847 GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVVSVEHIP 906

Query: 899 ESEIVD 904
           E+E  +
Sbjct: 907 EAEEAE 912


>gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1]
 gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1]
          Length = 931

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/911 (64%), Positives = 720/911 (79%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLNPHPERDVMAGIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C+A+IDNPDI LD ++EII GPDFPTG +ILG +G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIILGHSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+T   R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR   ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I +D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAADVAPLIKLIDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SRSR++ IIK EL  +++   TPRRT    G  +M+ ED I  EDMVV
Sbjct: 481 GVDITDYLHILASRSRIMSIIKDELNVLREAFATPRRTVFGFGSAEMDCEDLIAPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G VYK
Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+ W+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+QINR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRN
Sbjct: 661 KLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPVVEVRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDS 779
           SVGVRGI+LA  D+VISM I+ H +A   ER  Y+K +  +RR    D E++ +L + D 
Sbjct: 721 SVGVRGINLANDDKVISMTILEHVEATSVERSAYIKRVINERRAAGSDAEDLVTLDEEDE 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V+  ++E R  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG
Sbjct: 781 AVDTELTEGRYLELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVPV  IRIA R+TKGV IF+TA+ E+VVSVERI E
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISE 900

Query: 900 SEIVDEAESTE 910
           SE  D     E
Sbjct: 901 SEDDDNQLDDE 911


>gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
 gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
          Length = 916

 Score =  933 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/902 (65%), Positives = 716/902 (79%), Gaps = 8/902 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K
Sbjct: 3   SGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSVDGDPPAA RYTEC
Sbjct: 63  SAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTEC 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 123 RLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILGR+G+++AY TGRGSI++R  
Sbjct: 183 NLSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLRDESDR GYRVVIE
Sbjct: 243 VDIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRT
Sbjct: 303 LKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVAFREEVVSRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+  LI L
Sbjct: 363 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 422

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+S
Sbjct: 423 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ I+K EL ++++E  TPRRT    G  +ME ED I  EDMVVTVSH GY+KRVPL
Sbjct: 483 RVRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+
Sbjct: 543 NTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQS 602

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ALIN+L L QGERITTIMP PEDE+SW+ L ++FAT  G VRRNKLSDF+Q+NR+GK
Sbjct: 603 RGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRNGK 662

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRNSVGVRGI+LAKGD
Sbjct: 663 IAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAKGD 722

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE---ITSLKNDSSVEGNISEERC 790
           +VISM I+ H +A   ER  Y+K +  +RR    D +    I+  + D   E ++++ER 
Sbjct: 723 KVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERY 782

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG LVA FPV   
Sbjct: 783 AELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQ 842

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-----IVDE 905
           DQI+LVSD G LIRVPV  IR A R+TKGV IF+TA+ ERVVSVERI E E     + DE
Sbjct: 843 DQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPEDDTRSLEDE 902

Query: 906 AE 907
            E
Sbjct: 903 GE 904


>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 947

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 575/911 (63%), Positives = 709/911 (77%), Gaps = 2/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  I++  E   GI S+SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAEDDITTPPERPTGIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+ +N+ Y K A + GEVMGKYHPHG+++IYDAL RMAQDWSLR  LIEGQGNFGS+
Sbjct: 61  HGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K +  LL D+ K+TV+F+ NYDG  QEPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE+VDGCVA+IDNP I L+ LM  I GPDFPTGA++LGR GI +A
Sbjct: 181 GIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVLGRAGILSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y+TGRGSI++RG +H+E    DRE IV+TE+P+QVNK+ M+EK+A+LVR+KRI  I+D+R
Sbjct: 241 YSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVV+ELKR AS+DVILNQLYR+T LQ+ F  NMVALNG +PE+ TL  +L A
Sbjct: 301 DESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALNGGRPEQMTLPDMLSA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F++FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R
Sbjct: 361 FISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W A D+  LI LIDD  + I  +GT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 AWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI+E L+ILSSR R+  IIK+EL++V+DE  TPRRT + EG  DM+DED I REDMVV
Sbjct: 481 GEEIREYLEILSSRVRVREIIKEELIAVRDEFATPRRTELSEGAADMDDEDLIPREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           TVSH GY+KRVPL+ YR+QRRGGKGR+G+ ++ DED VT LF+ +THT VLFFSS G VY
Sbjct: 541 TVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ SPQ+RGKALIN+L L +GERIT+I+P P D  +   L V+FAT  G VRR
Sbjct: 601 KEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF Q+NR+GKIAMKLD   DEIL+V TC++++D+LLT   GQC+RF  + +RVFAG
Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RNSVGVRGISL +GD+VISMAI+ H DA   ER  Y+K   A      GD     +++ +
Sbjct: 721 RNSVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEE 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            + +  I +ER   L   E+ ILTVSE G+GKR+SSY+FR+  R GKGIRATD S+ +EI
Sbjct: 781 GAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L+A FPV   DQI+LV+D+G LIRVPV  IR A RAT+GV IF TA  ERVVSVERI 
Sbjct: 841 GQLMAGFPVESGDQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADGERVVSVERIP 900

Query: 899 ESEIVDEAEST 909
           +    +  E+ 
Sbjct: 901 DQGADEAGEAE 911



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 123/363 (33%), Gaps = 81/363 (22%)

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S       +   L   K      R T I+     +  +     E  V+  +  G V+R
Sbjct: 609 LASPQSRGKALINMLPLEK----GERITSILP----LPSDPDAAAELNVMFATTRGTVRR 660

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-G 609
             LS +    R GK  +  +  D D +  +   S    VL  ++ G   + +   + +  
Sbjct: 661 NKLSDFTQVNRNGK-IAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFA 719

Query: 610 SPQARGKALINILSLNQGERITTIM---------------------------------PF 636
              + G   +  +SL +G+R+ ++                                  P 
Sbjct: 720 GRNSVG---VRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPT 776

Query: 637 PEDESSWN--------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--- 679
            E+E + +                 ++  ++ G  +R+   +F  I R GK     D   
Sbjct: 777 VEEEGAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSR 836

Query: 680 --SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
                ++++       + ILL T  GQ +R P+  IR  AGR + GV     A G++V+S
Sbjct: 837 ASEIGQLMAGFPVESGDQILLVTDRGQLIRVPVEGIRT-AGRATRGVTIFKTADGERVVS 895

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +  +    AD                    + + I     D  V+G+  +E   +    +
Sbjct: 896 VERIPDQGAD---------------EAGEAEADTIDGDLEDGGVDGSTPDETGPDAAAPD 940

Query: 798 QFI 800
             +
Sbjct: 941 GDV 943


>gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
 gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
          Length = 933

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/914 (64%), Positives = 723/914 (79%), Gaps = 5/914 (0%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+       +    GI  +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL K AH LL+D+ K+TVDF+  YD S  EP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNL EV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +
Sbjct: 181 GGIAVGMATNIPPHNLSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGSIV+RG  +IE+   DRE I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+
Sbjct: 241 AYATGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F  NMVALNG KPE   L  +L+
Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLR 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV+FREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+
Sbjct: 361 AFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W + D++ LI LIDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN+
Sbjct: 421 RRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNT 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDILSSR+R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMV
Sbjct: 481 IGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS+YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW  L V+FAT  G VRR
Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF+Q+NR+GKIAMKL +  DEIL VETCT  +D+LLT   GQC+RF +  +RVF  
Sbjct: 661 NKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS---L 775
           RNSVGVRGI++A  D++ISM+++ H DA   ER  Y+K  +++RRL +    E       
Sbjct: 721 RNSVGVRGITMAATDRIISMSVIEHVDASPAERAAYLKRAASERRLAAETAGEEEEIALT 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   E  +S+ R +ELK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK 
Sbjct: 781 NEEIGEETELSDSRYEELKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKT 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE
Sbjct: 841 AEIGQLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900

Query: 896 RIRESEIVDEAEST 909
           RI E +  +E E  
Sbjct: 901 RISEPQSDEEIEEA 914



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 61/307 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D         E  V+  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 629 ERITTIMPLPEDETSWG----ELDVMFATTRGTVRRNKLSDFVQVNRNGK-IAMKLEEEG 683

Query: 575 DFVTDLFIVSTHTSVLFFSSLG------------------------------FVYKEKVW 604
           D +  +   + +  VL  ++ G                               +    V 
Sbjct: 684 DEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQSRNSVGVRGITMAATDRIISMSVI 743

Query: 605 RLPIGSPQARGKAL-------------------INILSLNQGERITTIMPFPEDESSWNN 645
                SP  R   L                   I + +   GE  T +     +E   + 
Sbjct: 744 EHVDASPAERAAYLKRAASERRLAAETAGEEEEIALTNEEIGEE-TELSDSRYEELKAHE 802

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTT 700
            YV+  T++G  +R+   DF    R GK     D        ++++      ++ I+L +
Sbjct: 803 QYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGNDDQIMLVS 862

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  +R P++ IR FA R + GV   + A+G++V+S+  +    +D +          A
Sbjct: 863 DGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEEIEEAVQGGSEA 921

Query: 761 QRRLISG 767
                +G
Sbjct: 922 NPTPDAG 928


>gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
          Length = 905

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/909 (60%), Positives = 691/909 (76%), Gaps = 5/909 (0%)

Query: 1   MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+    ++       I  VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 1   MTDPKDPTESGSGPVDIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 61  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILGR GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIILGRQGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   IE    DRE IVV+EIPYQVNKA M+E+IAELVR+K+I  ++DL
Sbjct: 241 AYHLGRGSIVMRGKVSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+GYRVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L 
Sbjct: 301 RDESDREGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+P TAR  LM 
Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ ++ LIDD  + I  DGT  LS  Q +AIL+LRL RLT LGRD+I  EL+ 
Sbjct: 421 RDWPARDVETMMMLIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+  I++ EL ++K+E  TPRRT I++   ++EDED I REDMV
Sbjct: 481 LAVEIADYLDILRSRARVQDIVRNELNAIKEEFATPRRTMIIDQEGEVEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQ+RGGKGRSG+  R+EDFV  LF+ STHT VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL + QGERITTIMP PEDESSW  L V+FAT  GNVRR
Sbjct: 601 KEKVWRLPMAAPSARGKALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKL   + I+ V+ C + +D+LLT   GQC+RFPI+ +RVF GR
Sbjct: 661 NKLSDFVDVRRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L +GD++IS+ I+ H D   DER  Y++  +A RR   G  +E  +   ++
Sbjct: 721 TSMGVRGITLGEGDRLISLTILRHMDVSADERAAYLRRANAVRR--GGADDEAGTDHEEA 778

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    + E+R  E+   EQF+LT+SE G+GKR+SSY++R + R GKGI A  V+  N  G
Sbjct: 779 TGAIELGEQRYVEMSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRN--G 836

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L+  FPV+D+DQI+LV+DKG LIR PV +IRI  R+T+GV +F+TA DERVVSVER+ +
Sbjct: 837 KLIGSFPVDDSDQIMLVTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERLTD 896

Query: 900 SEIVDEAES 908
                  E 
Sbjct: 897 EGEHPSDEE 905


>gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
 gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
          Length = 913

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/903 (61%), Positives = 685/903 (75%), Gaps = 4/903 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE   S +     GI  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   TEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQ +S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ I+ GPDFPTG +ILGR GI++AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIILGRQGIRSAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IAELVR+KRI  I+DLRD
Sbjct: 244 HLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVV+ELKR A  +V+LNQLYRYT LQ+ F  NMVAL+  +P+   L  +L  F
Sbjct: 304 ESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 364 IAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  +    DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 424 WPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + LDIL SR+R+  IIK EL +VK E  TPR+T I+E   ++EDED I REDMVVT
Sbjct: 484 IEIADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQ+RGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+ +P ARGKA+INIL L QGERITTIMP PEDESSW NL V+FAT  G VRRNK
Sbjct: 604 KVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP S +RVF+GR S
Sbjct: 664 LSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +GVRGI+LA+GD+VIS++I+ H DA   ER  Y+K   A RR  +G+  E      ++  
Sbjct: 724 MGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783

Query: 782 EGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +    + E R  E+   EQF+LTV+ +G+GKR+SS++FR+S R GKGIRA+D +K+ E
Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGE 843

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA+ E VVSVE I
Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEGEHVVSVEHI 903

Query: 898 RES 900
           RE 
Sbjct: 904 REE 906



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 91/258 (35%), Gaps = 31/258 (12%)

Query: 511 ELDTPRRTRIVE----GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKG 565
           +    RR+ I+         + D       D V+  +  G   R P S  R    R   G
Sbjct: 666 DFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTSMG 725

Query: 566 RSGVVMRDED-----FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL-I 619
             G+ + + D      +   F  +      +    G +              A G+ +  
Sbjct: 726 VRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAI-----------RRAATGEDIEP 774

Query: 620 NILSLNQGERITTIMPFPED---ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA- 675
              +    E   T +  PE    E      +V+  T  G  +R+   +F    R GK   
Sbjct: 775 EEATPEADEAAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIR 834

Query: 676 ----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
                KL     +++       + I+L +  GQ +R P+  IR+   R S GVR  + A+
Sbjct: 835 ASDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRI-TSRASKGVRVFTTAE 893

Query: 732 GDQVISMAIVLHADADYD 749
           G+ V+S+  +   + + +
Sbjct: 894 GEHVVSVEHIREENENGN 911



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 84/275 (30%), Gaps = 61/275 (22%)

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           ++      ++    T+  G        A  +   R     R  +L + +    +  +   
Sbjct: 429 VAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQ---RLTALGREEISEELDKLAIE 485

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
            ADY + +     + A  +   G  +   +    + +     E   ++L  +E  ++TVS
Sbjct: 486 IADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVTVS 545

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL----------------------- 841
             G+ KR     +R   R GKG       + + +  L                       
Sbjct: 546 HAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKV 605

Query: 842 ---------------------------VAVFPVNDND------QIILVSDKGTLIRVPVN 868
                                        + P+ +++       ++  +  GT+ R  ++
Sbjct: 606 WRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNKLS 665

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +     R   G++     + E +V V+   E + V
Sbjct: 666 DFVDVRR--SGIIAMKLGEGEAIVDVQICTERDDV 698


>gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
 gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
          Length = 925

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 557/912 (61%), Positives = 687/912 (75%), Gaps = 16/912 (1%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             + +    I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM + G E
Sbjct: 9   PGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFE 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVDGD PA
Sbjct: 69  WNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPA 128

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K A  LLDDL KDTVD++ NYDGSF EP VL A++PN+LVNG GGIAVGM
Sbjct: 129 AMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNGAGGIAVGM 188

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV+D C+A+ID+P + +D L  II GPDFPTG +ILGR GI+ AY TGRG
Sbjct: 189 ATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIILGRAGIRLAYHTGRG 248

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SIV+RG   IE    DRE I+++EIPYQVNKA M+E+IA+LVREK+I  I+DLRDESDR 
Sbjct: 249 SIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISDLRDESDRD 308

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L  FVAFRE
Sbjct: 309 GFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLTLFVAFRE 368

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTKYLLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A+D
Sbjct: 369 QVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAAD 428

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L +EI +
Sbjct: 429 VAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELDKLALEIAD 488

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL SR+R+  I+K EL++VK E  TPR+T I+E   ++EDED I REDMVVTVSH G
Sbjct: 489 YLDILRSRARVQTIVKDELIAVKTEFATPRKTVIIEQEGEVEDEDLIQREDMVVTVSHAG 548

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRL
Sbjct: 549 YVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRL 608

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PI  P  RGKALINIL L QGERITTIMP PEDE SW  L V+FAT  GNVRRNKLSDF+
Sbjct: 609 PIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRRNKLSDFV 668

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--------RVFAG 718
            + RSG IAMKLD  + I+ V+ CT+ +D+LLTT  GQC+RFP+S          RVF G
Sbjct: 669 DVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKEFGVRVFQG 728

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITS 774
           R+S+GVRGI+LA  D+VIS++I+ H DA  +ER  Y++  +A RR    +     +E   
Sbjct: 729 RSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANAVRRGGVEERAAVEDEAAG 788

Query: 775 LKNDSSVEGNIS--EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           ++ + +  G I   E+R  E+   EQF+LT+SE G+GKRTSS+++R +NR GKGI A  V
Sbjct: 789 VEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNRGGKGIVAMSV 848

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F TA DE+VV
Sbjct: 849 N--NRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKVV 906

Query: 893 SVERIRESEIVD 904
           SVE I E+E  +
Sbjct: 907 SVEHIPEAEETE 918



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 93/259 (35%), Gaps = 25/259 (9%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           ++F    ++  I  + +  DE    +   +E+ ++  +  G   R P+S  R    R   
Sbjct: 512 TEFATPRKTVIIEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLSTYRA-QRRGGK 566

Query: 723 GVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           G  G++  + D V  + +      VL   +        +  +        G         
Sbjct: 567 GRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAPPNGRGKALINILPL 626

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   I      E       ++  +  G  +R    DF    RSG  I A  +    
Sbjct: 627 EQGERITTIMPLPEDEQSWAALDVMFATTGGNVRRNKLSDFVDVRRSG--IIAMKLDDGE 684

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--------IRI-ASRATKGVVIFSTAK 887
              A+V V    + D ++L +  G  IR PV++        +R+   R++ GV   + A 
Sbjct: 685 ---AIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKEFGVRVFQGRSSMGVRGIALAP 741

Query: 888 DERVVSVERIRESEIVDEA 906
           +++V+S+  +R  +   E 
Sbjct: 742 EDKVISLSILRHLDAGSEE 760



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/258 (20%), Positives = 99/258 (38%), Gaps = 23/258 (8%)

Query: 511 ELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-------- 558
           +    RR+ I+    +    + D       D V+  +  G   R P+S  R         
Sbjct: 666 DFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKEFGVRV 725

Query: 559 -QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q R   G  G+ +  ED V  L   S    +   S     Y  +   +  G  + R   
Sbjct: 726 FQGRSSMGVRGIALAPEDKVISL---SILRHLDAGSEERAAYLRRANAVRRGGVEERAAV 782

Query: 618 LINILSLNQGERITTIMPFPED---ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                 +   +     +   E    E S +  +V+  +++G  +R    ++   NR GK 
Sbjct: 783 EDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNRGGKG 842

Query: 675 AMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            + +   +   ++++       + I+L T  GQ +R P+  IRV AGR++ GV     A 
Sbjct: 843 IVAMSVNNRNGKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRV-AGRSTQGVIVFDTAD 901

Query: 732 GDQVISMAIVLHADADYD 749
            ++V+S+  +  A+   +
Sbjct: 902 DEKVVSVEHIPEAEETEN 919


>gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
 gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
          Length = 945

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/902 (65%), Positives = 717/902 (79%), Gaps = 5/902 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S      GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDQKTPSGPITP-GIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  WN+KYVK +RI G+VMGKYHPHG+ +IYDA+ RMAQ WS+  +LI+GQGNFGS+
Sbjct: 60  HEGGYHWNRKYVKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K AH +++D+ KDTVDF+  YD S +EP VL AR+PN+LVNG G
Sbjct: 120 DGDPPAAMRYTESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GC+A++DNP IDL  LM+II GPDFPT  +ILG+ GI+ A
Sbjct: 180 GIAVGMATNIPPHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIILGQAGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS+++RG  H+E    DRE I++TE+PYQVNK++M+EK+AELVR+KRI  I+DLR
Sbjct: 240 FETGRGSVIMRGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+ADVI+NQLYRYT LQS F VNMVALNG KPE   LI +LKA
Sbjct: 300 DESDRQGYRVVIELKRDANADVIINQLYRYTPLQSSFGVNMVALNGGKPELMNLIDMLKA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+V+ RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM R
Sbjct: 360 FVSFREDVITRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +EL  +
Sbjct: 420 RWPAMDVEVLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKI 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ L+IL SR R+  I+K EL++V+DE   PRRT I EG  DM+DED I REDMVV
Sbjct: 480 GEEIKDFLEILGSRIRVQQIVKDELIAVRDEFGVPRRTVIAEGGPDMDDEDLIAREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 540 TVSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L +GERIT+IMP PEDE+S   L V+F+TK G VRRN
Sbjct: 600 EKVWRLPIGTPTSRGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKLD   DEIL+VETC + +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 660 KLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI---SGDTEEITSLK 776
           NSVGVRGI+L +GD +ISM IV H DA+  ER  Y+K   A+RR      GD EE+  + 
Sbjct: 720 NSVGVRGINLGQGDTIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVG 779

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D+  +G +S+ER  ELK +EQFILTVSEKG+GKR+SSY+FRIS R GKGIRATD SK  
Sbjct: 780 EDAVEDGELSDERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTG 839

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           EIG L+A FPV   DQI++VSD G +IRVPV  IR+ASRATKGV IF+TAKDERVVSV+R
Sbjct: 840 EIGPLIAAFPVEPGDQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSVDR 899

Query: 897 IR 898
           I 
Sbjct: 900 IN 901



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 112/328 (34%), Gaps = 65/328 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+     + +++    E  V+  +  G V+R  LS +    R GK  +  +  D 
Sbjct: 627 ERITSIMP----LPEDETSCGELDVMFSTKRGTVRRNKLSDFVQVNRNGK-IAMKLDSDG 681

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D + ++   +    VL  ++LG   +  V  + +     + G   +  ++L QG+ I ++
Sbjct: 682 DEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGRNSVG---VRGINLGQGDTIISM 738

Query: 634 MPFP-----------------------------------------EDESSWNNLY----- 647
                                                        ED    +  Y     
Sbjct: 739 TIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVGEDAVEDGELSDERYAELKA 798

Query: 648 ----VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILL 698
               ++  ++ G  +R+   +F    R GK     D         +++       + I++
Sbjct: 799 REQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAAFPVEPGDQIMM 858

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  GQ +R P+  IR  A R + GV   + AK ++V+S+  +   ++D +         
Sbjct: 859 VSDGGQVIRVPVGGIR-MASRATKGVTIFNTAKDERVVSVDRINEPESDEELEEGVEGET 917

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNIS 786
                  + D     +    S+ E   S
Sbjct: 918 VEGVADAAPDANGTPAPDASSAGEEPQS 945


>gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse]
 gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse]
          Length = 925

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 579/904 (64%), Positives = 713/904 (78%), Gaps = 1/904 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD C+A+ID+P+I LD ++EII GPDFPTG +ILG +GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIILGHSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELK+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR + +P+ AR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SRSR++ I+K EL  +++   TPRRT    G  +M+ ED I  EDMVV
Sbjct: 481 GVDIADYLHILASRSRIMSIVKDELNVLREAFATPRRTIFGFGSAEMDCEDLIAPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVLFFSTRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +R+FAGRN
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRIFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDS 779
           SVGVRGI+L  GD+VISM ++ H +A   ER  Y+K +  +RR    D E+I    +ND 
Sbjct: 721 SVGVRGINLTNGDKVISMTLLEHVEATSVERSAYIKRVIHERRAAGADAEDILVLDENDV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LT+SE G+GKR+SSY+FRIS R GKGIRATD SK  EIG
Sbjct: 781 GTETELTDERYAELNAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVPV+ IRI  R+TKGV IF+TA+ ++VVSVERI E
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSVERISE 900

Query: 900 SEIV 903
           SE  
Sbjct: 901 SEDD 904


>gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 909

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/901 (62%), Positives = 682/901 (75%), Gaps = 3/901 (0%)

Query: 1   MTEHIISSDEE-EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D+  +   I  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G   +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGS
Sbjct: 61  MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE RL KAA  LL D+ KDTVDF+PNYD +  EP VL A++PN+LVNG 
Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D CVA+IDNP + +D L+ I+ GPDFPTG VILGR GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRA 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   IE    +RE +++TEIPYQVNKA M+E+IAELV+EK+I  I DL
Sbjct: 241 AYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVVIELKR A ADV+LNQLYR+T LQ+ F VNMVAL+  +P    L  +L 
Sbjct: 301 RDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLA 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV FRE VV RRTK+LL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 361 IFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++D++ LIDD  + I  DGT+ LS  Q RAIL+LRL RLT LGRD+IR+EL+ 
Sbjct: 421 RDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI + LDIL SR R+LGIIK EL  VK E  TPRRT I+E   ++EDED I REDMV
Sbjct: 481 LAGEIADYLDILRSRERVLGIIKTELAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGR+G+  RDEDFV+ LF+ STHT VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL L QGERITTIMP PEDES+W NL V+FAT  GNVRR
Sbjct: 601 KEKVWRLPMAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF GR
Sbjct: 661 NKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L +GD+VIS+AI+ H +   DER  Y+K   A     + +     +   ++
Sbjct: 721 TSMGVRGIALGEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEET 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S    +++ER  E+   EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  G
Sbjct: 781 SGSFQLAQERYVEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVN--NRNG 838

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LV+DKG LIR PV  IRIA R+T+GV++F TA+DE VVSVE I E
Sbjct: 839 NLVASFPVEDADQIMLVTDKGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE 898

Query: 900 S 900
            
Sbjct: 899 E 899



 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 17/253 (6%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    R+  +  + +  DE    +   +E+ ++  +  G   R P+SA R    R   G
Sbjct: 512 EFATPRRTVIMEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLSAYRA-QRRGGKG 566

Query: 724 VRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
             G+     D V  + +      VL   +        +  +        G          
Sbjct: 567 RAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLE 626

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  I      E       ++  +  G  +R    DF    RSG  I A  + +   
Sbjct: 627 QGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSG--IIAMKLDENE- 683

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896
             A+V V    + D ++L    G  IR PV ++R+   R + GV   +  + ++V+S+  
Sbjct: 684 --AIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAI 741

Query: 897 IRESEIVDEAEST 909
           +R  E   +  S 
Sbjct: 742 LRHVETTSDERSA 754


>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
 gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
 gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
          Length = 928

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 587/915 (64%), Positives = 721/915 (78%), Gaps = 5/915 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTRLPEHDVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ KDTVDF+ NYDG   EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGCVA+IDNP+I +D ++ II GPDFPTG +ILG +G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR + +P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W AS++  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGR++I +ELN++
Sbjct: 421 RWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G +I + L IL+SRSR++ I+K EL ++++   TPRRT    G  +M+ ED IV EDMVV
Sbjct: 481 GEDIADYLGILASRSRIMDIVKSELSALRETFATPRRTVFGFGSAEMDCEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +D+DFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW  L ++FAT  G VRRN
Sbjct: 601 EKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDFIQ+NR+GKIAMKLD   DEILSVETCT+ +D++L T  GQC+RFP++ IRVF+GR
Sbjct: 661 KLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND- 778
           NS+GVRGI++ +GD+VISM I+ H +A   ER  Y+K    +RR+   D E+I ++  D 
Sbjct: 721 NSMGVRGINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDG 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +++ER  EL   EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD+SK  EI
Sbjct: 781 EETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV + DQI+LVSD G LIRVPVN IRIA R+TKGV +F+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVERIS 900

Query: 899 ESEIVD---EAESTE 910
           ESE      + ES E
Sbjct: 901 ESENDTNQLDIESEE 915



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 113/301 (37%), Gaps = 57/301 (18%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D      +     ++  +  G V+R  LS +    R GK  +  +  + 
Sbjct: 628 ERITTIMPLPEDEASWGKL----DIMFATTRGTVRRNKLSDFIQVNRNGK-IAMKLDEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINI------LSLNQG 627
           D +  +   + H  V+  ++ G   +  V  + +     + G   IN+      +S+   
Sbjct: 683 DEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGRNSMGVRGINMVEGDKVISMTIL 742

Query: 628 ERITT-------------------------IMPFPED--------------ESSWNNLYV 648
           E +                           I+   ED              E S +   +
Sbjct: 743 EHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDGEETEVELTDERYAELSAHEQML 802

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLG 703
           +  ++ G  +R+   DF    R GK     D        ++++     + + I+L +  G
Sbjct: 803 LTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEIGKLVAAFPVGERDQIMLVSDGG 862

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +R P++ IR+ AGR++ GV   + AKG++V+S+  +  ++ D ++     +  S    
Sbjct: 863 QLIRVPVNCIRI-AGRSTKGVTVFNTAKGEKVVSVERISESENDTNQLDIESEEHSGTVS 921

Query: 764 L 764
           +
Sbjct: 922 M 922


>gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 910

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/908 (61%), Positives = 686/908 (75%), Gaps = 8/908 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+  
Sbjct: 1   MAENDPTGAAPPASDIRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSA 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G    +KYVK ARI G+V+G YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSV
Sbjct: 61  FESGHLPERKYVKSARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K A  LL D+ K+TVDF PNYD S +EP VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTESRLAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE++D CVA+ID+P + ++ L EI+ GPDFPTG +ILGR G + A
Sbjct: 181 GIAVGMATNIPPHNLGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMILGRAGTRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGS+++R  SH+E+   +RE ++ TEIPYQVNKA ++EKIAELV+EKR+  I+DLR
Sbjct: 241 YATGRGSVIMRAKSHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V+E+KR A ADV+LNQLYR+T LQS F  NMVALNG +PE   L  +L+A
Sbjct: 301 DESDRSGMRIVVEIKRDAMADVVLNQLYRFTPLQSSFGCNMVALNGGRPELMNLKDLLQA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P  AR  LM R
Sbjct: 361 FVDFREEVVSRRTKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT LGRD++ +EL +L
Sbjct: 421 DWPAHDIAPLIALVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI + LDIL SR+R+ GI+K EL  V+++  TPR+T IV+    +EDED I REDMVV
Sbjct: 481 ADEIADYLDILRSRARIQGIVKGELAEVREQFATPRKTEIVDFDGSVEDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YK
Sbjct: 541 TVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           EKVWRLP+ +P ARGKAL+NIL L +  ERITTIMP PEDE+SW  L V+FAT  GNVRR
Sbjct: 601 EKVWRLPMAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF  +NR+GKIAMKLD  D I+ VE C  + ++LLTT LGQC+RFP+  +RVF GR
Sbjct: 661 NKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKND 778
           +S GVRGI L K D+VISM I+   DA  +ER  Y+K     RR ++G++EE   +   D
Sbjct: 721 DSTGVRGILLGKDDKVISMTILNAFDATAEERAGYLK----MRRAVTGESEENGDAEAED 776

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            +    IS +R  E+   EQ++LT+SE+GFGKR+SS+++R S R GKGI A  V+  N  
Sbjct: 777 GAEAAAISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARN-- 834

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+LVA FPV  +DQI+LV+D G LIRVPV++IRI  RA++GV +F+TAKDE+VVSVE I 
Sbjct: 835 GSLVASFPVEASDQIMLVTDGGQLIRVPVDDIRIVGRASQGVTVFNTAKDEKVVSVEHIE 894

Query: 899 ESEIVDEA 906
             +   EA
Sbjct: 895 GEDEGAEA 902


>gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
 gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 915

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/898 (61%), Positives = 691/898 (76%), Gaps = 3/898 (0%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E     +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M +
Sbjct: 5   EDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYE 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDG
Sbjct: 65  QGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDG 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE +L K+A  LLDD+ KDTVDF+ NYD S +EP VL A++PN+LVNG GGI
Sbjct: 125 DPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNGAGGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNL EV+D CVA+IDNP I +D L +II GPDFPTG +ILGR GI++AY 
Sbjct: 185 AVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIILGRAGIRSAYH 244

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRGSI++RG   I+    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+DLRDE
Sbjct: 245 LGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDE 304

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR GYRVVIELKR A ADV+LNQLY++T LQ+ F+ NM+AL+G +P+  TL  +L  FV
Sbjct: 305 SDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGRPQTMTLKDLLTIFV 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFRE VV RRTK+LLNKARDRAH+LVGLA+AVAN+DE++R+IR SPNP +AR  LM R W
Sbjct: 365 AFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALMSRDW 424

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A D++ +I LIDD  + +  DGT+ LS  Q +AIL+LRL RLT LGR++I +EL+ L I
Sbjct: 425 PARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELDKLKI 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI + L+IL SR+R+  IIK EL +VK E  TPRRT I+E   ++EDED I REDMVVTV
Sbjct: 485 EIADYLEILRSRARVQDIIKTELAAVKAEFGTPRRTAIIEQEGEVEDEDLIQREDMVVTV 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEK
Sbjct: 545 SHAGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEK 604

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           VWRLPI +P +RGKALINIL L QGERITTIMP PEDESSW NL V+FAT  GNVRRNKL
Sbjct: 605 VWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRRNKL 664

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF+ + RSG IAMKLD  +EI++V+ CT+ +D+LLT   GQC+RFP++ +RVF GR S+
Sbjct: 665 SDFVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSM 724

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+LA+GD+VIS++I+ H +   DER  Y+K   A     +   E + +   +++  
Sbjct: 725 GVRGIALAEGDKVISLSILRHVETTSDERTAYLKMRRAM-SGETTTEEPVETEGEEAAGA 783

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S+ER  E+  +EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  G LV
Sbjct: 784 IQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVN--NRNGKLV 841

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           A FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE I E 
Sbjct: 842 ASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIGEE 899



 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 90/250 (36%), Gaps = 17/250 (6%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    R+  I  + +  DE    +   +E+ ++  +  G   R P+SA R    R   G
Sbjct: 513 EFGTPRRTAIIEQEGEVEDE----DLIQREDMVVTVSHAGYTKRVPLSAYRA-QRRGGKG 567

Query: 724 VRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
             G+   + D V  + +      VL   +        +  +        G          
Sbjct: 568 RSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAAPNSRGKALINILPLE 627

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  I      E       ++  +  G  +R    DF    RSG  I A  +    E
Sbjct: 628 QGERITTIMPLPEDESSWANLDVMFATTGGNVRRNKLSDFVDVRRSG--IIAMKLDDGEE 685

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896
              +V V    + D ++L +  G  IR PV ++R+   R + GV   + A+ ++V+S+  
Sbjct: 686 ---IVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMGVRGIALAEGDKVISLSI 742

Query: 897 IRESEIVDEA 906
           +R  E   + 
Sbjct: 743 LRHVETTSDE 752



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 102/285 (35%), Gaps = 60/285 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    D      +     V+  +  G V+R  LS +   RR   G   + + D 
Sbjct: 630 ERITTIMPLPEDESSWANL----DVMFATTGGNVRRNKLSDFVDVRRS--GIIAMKLDDG 683

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           + + ++ I +    VL  ++ G   +  V  + +     + G   +  ++L +G+++ ++
Sbjct: 684 EEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGRTSMG---VRGIALAEGDKVISL 740

Query: 634 MPFPEDESSWNNLYVVF------------------------------------------- 650
                 E++ +                                                 
Sbjct: 741 SILRHVETTSDERTAYLKMRRAMSGETTTEEPVETEGEEAAGAIQLSQERYVEMSAQEQV 800

Query: 651 ---ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
               + +G  +R    ++    R GK  + +   +   ++++       + I+L T  GQ
Sbjct: 801 VLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGKLVASFPVEDSDQIMLVTDKGQ 860

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            +R P+  IR+ AGR++ GV   + A  + V+S+  +     + +
Sbjct: 861 LIRCPVDGIRI-AGRSTQGVIVFNTADDEHVVSVEHIGEETENGN 904


>gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 906

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/889 (66%), Positives = 722/889 (81%), Gaps = 4/889 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGK
Sbjct: 1   MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+
Sbjct: 61  YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+  YD S  EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A
Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   DRE
Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGNDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+RDESDRQGYRVVIELKR A ADVIL
Sbjct: 241 SIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F  NMVALNG KPE  TL  +LKAFV+FREEV+ RRTK+LL KARDRA
Sbjct: 301 NQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I +D
Sbjct: 361 HVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRINAD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR+R+  I+K E
Sbjct: 421 GTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVKDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L +V+DE  TPRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGK
Sbjct: 481 LAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RGKALIN+L L
Sbjct: 541 GRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683
            QGERITTIMP PEDE+SW  L V+FAT  G VRRNKLSDF+Q+NR+GKIAMKL +  DE
Sbjct: 601 EQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           IL VETCT  +D+LLT   GQC+RF +  +RVF  RNSVGVRGI++A+ D++ISM+++ +
Sbjct: 661 ILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVIEN 720

Query: 744 ADADYDERICYMKHMSAQRRLIS---GDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            DA   ER  Y+K  +A+RRL +   G+ EEI     +   E  +S+ER + LK  EQ++
Sbjct: 721 VDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLKAHEQYV 780

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK  EIG LVA FPV ++DQI+LVSD G
Sbjct: 781 LTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLVSDGG 840

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           T+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E +  +E+E T
Sbjct: 841 TVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 889


>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
 gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
          Length = 930

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/910 (60%), Positives = 687/910 (75%), Gaps = 11/910 (1%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +  +S         I  VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQD+S+RL LI GQGNFGS
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTECRL+K AH  L D+ KDTV+F  NYDGS QEP VL ARYPN+LVNG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HN+GEV+DG +A+I+ P+I L  LMEII GPDFPTG +ILGR GIK 
Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKA 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGS+++R     E+    R  I+V+EIPYQVNK+AM+EKIAELVREKRI  I+D+
Sbjct: 241 AYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQG RVVIELK+ A  DVI+NQLYRY+ LQ  F  NMVALNG +PE+  L  +LK
Sbjct: 301 RDESDRQGMRVVIELKKDAVPDVIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEVV RRT++LL KARDRAHVLVGLA+A AN+D+V+ +IR +P+P TARR+LM+
Sbjct: 361 AFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R+W A DI+ LI LIDD  Y I  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EIK+ LDIL SR R+L I++ EL  V+DE  TPRRT I +G  D++DED I REDMV
Sbjct: 481 LAAEIKDYLDILKSRERILEIVRTELEEVRDEFATPRRTEITDGGGDLDDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPL  YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  Y
Sbjct: 541 VTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+  PQARG AL+N+L L QGERIT+I+P PE+E +W  L V+FATK G +RR
Sbjct: 601 KMKVWRLPLAGPQARGNALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF QIN++GKIAMKL+  D I++V T T+++D+LLTT  G C+RFP + +RVF+GR
Sbjct: 661 NKLSDFAQINKNGKIAMKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI+LA+GD VISM I+ H D D DER  Y+K   A       ++          
Sbjct: 721 NSVGVRGINLAEGDHVISMTILRHFDCDSDERTAYLKLSRAMSGEEGAESVSFE------ 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  +++ER + +    + ILTVSE G+GKRTSSY++R + R GKGI A  V+  N  G
Sbjct: 775 --DAGMTKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRN--G 830

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA F   ++D+I+LV++ G LIR PV+ IR+A R+T+GV++F+T+ DE+VV+VERI E
Sbjct: 831 RLVASFRSEESDEIMLVTNGGQLIRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERISE 890

Query: 900 SEIVDEAEST 909
           ++  +  E+ 
Sbjct: 891 ADDDENVEAE 900



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 106/309 (34%), Gaps = 53/309 (17%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+    + E       E  V+  +  G ++R  LS +    + GK    + + + 
Sbjct: 629 ERITSILPLPENEETWA----ELDVLFATKRGTIRRNKLSDFAQINKNGK--IAMKLEEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D + ++   +    VL  +S G   +     + +     + G   +  ++L +G+ + ++
Sbjct: 683 DGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGRNSVG---VRGINLAEGDHVISM 739

Query: 634 MPFPEDESSWNNLYVVF---------------------------------------ATKH 654
                 +   +                                              +++
Sbjct: 740 TILRHFDCDSDERTAYLKLSRAMSGEEGAESVSFEDAGMTKERFEAMDENAEVILTVSEN 799

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R    ++    R GK    +   D    +++     + ++I+L T  GQ +R P+ 
Sbjct: 800 GYGKRTSSYEYRTTGRGGKGIAAMTVNDRNGRLVASFRSEESDEIMLVTNGGQLIRCPVH 859

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            IRV AGR++ GV   + +  ++V+++  +  AD D +     +    A           
Sbjct: 860 GIRV-AGRSTQGVIVFNTSADEKVVAVERISEADDDENVEAEGVSEGGADNGEAGAVPPA 918

Query: 772 ITSLKNDSS 780
                 ++ 
Sbjct: 919 PEGDGGETP 927


>gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
 gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
          Length = 912

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/901 (61%), Positives = 684/901 (75%), Gaps = 6/901 (0%)

Query: 1   MTEHIISSDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E     D+ E+ G  I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF
Sbjct: 1   MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL+L++GQGNFG
Sbjct: 61  SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVD DPPAA RYTE RL K A  LL+D+ + TVDF+PNYDG   EP VL AR+PN+LVNG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D  +A+ID PD+ +  LMEI+ GPDFPT A ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATILGRGGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           NAYATGRGSI++R  + IE    +RE I+ TEIPYQVNKAA++E+IAELV+EKR+  IAD
Sbjct: 241 NAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F+VNM+ALNG +PE  TL  +L
Sbjct: 301 LRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALNGGRPELMTLHDVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV FRE VV RRTK+ L KARD AH+ VGLAIAVAN+DEV+R+IR SP+   AR  LM
Sbjct: 361 RAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D+  L++LI D  + +  DGT+ LSE Q RAIL+LRL RLT LGR++I   LN
Sbjct: 421 ARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  EI E L+IL SR +L GIIK E+L+VK+   TPRRT+I +   D+EDED I REDM
Sbjct: 481 KLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATPRRTQITDAEGDVEDEDLIAREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ M++EDFV  LF+ +THT VLFFSS G  
Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKA 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+ +PQARGKAL+N+L L  GERITTIMP PEDESSW  L V+FAT  G VR
Sbjct: 601 YKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + R+G IAMKLD  + I+ V T T+ +DILLTT  GQC+RF +  +RVF G
Sbjct: 661 RNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEVRVFQG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLK 776
           R S+GVRG+SL +GD+VIS++I+ H +A  +ER  Y+K  +A RR +  D   +     +
Sbjct: 721 RTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGEDVSPDAGAEAE 780

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             ++    +++ER   +++ EQ ILTVSE G+GKRTSSY++R + R GKGI A  V+  N
Sbjct: 781 EAATGAVELTDERFAAMQVAEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARN 840

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV   D+I+LV++ G LIR PV+ IRIA R+T+GV++F+TA+DERVVSVE 
Sbjct: 841 --GKLVASFPVGQGDEIMLVTNGGQLIRCPVDGIRIAGRSTQGVIVFNTAEDERVVSVEH 898

Query: 897 I 897
           I
Sbjct: 899 I 899


>gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 915

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/915 (59%), Positives = 688/915 (75%), Gaps = 12/915 (1%)

Query: 1   MTEHIISSDEE----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT++  S DE     E   I  VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI
Sbjct: 1   MTDN--SDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRI 58

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M ++G++WNKKYVK ARI GEVMGKYHPHGN AIYDAL R+AQD+S+R+ L++GQGN
Sbjct: 59  LFAMNELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGN 118

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS+DGDPPAAERYTE RL K A FLLDDL  DTVD+R NYDG+ QEP VL A++PN+LV
Sbjct: 119 FGSIDGDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLV 178

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG GGIAVGMATNIP HNLGEV+D C+A +DNP+I +D L +II+GPDFPT  +ILGR G
Sbjct: 179 NGAGGIAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLILGRGG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY  GRGSI++R    +E    DRE +VV+EIPYQVNK  ++EKIA+LVR+K+I  I
Sbjct: 239 ILSAYHKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGI 298

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +DL DES+R+G R+VIELKR A ADV+LN LY+Y+ LQ+ F  NM+A+NG +PE  TL  
Sbjct: 299 SDLWDESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAINGGRPESLTLKD 358

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            + AF +FR++VV RR K+LLNKARDRAHVLVGLAIAVAN+DEV+++IRFS +P  A+ +
Sbjct: 359 FISAFTSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQ 418

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R W A D+  LI+LI D  + + + GT  LSE Q +AILELRLARLT LGRD+I +E
Sbjct: 419 LMARDWPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADE 478

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           LN +  EI+E L IL+SR+R++ I+K EL ++KDE  TPR+T IV+   ++EDED I RE
Sbjct: 479 LNKIANEIREYLAILASRARVVDIVKGELQTIKDEFATPRKTEIVDIEGEVEDEDLIQRE 538

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D VVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ STHT VLFFSS G
Sbjct: 539 DCVVTVSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y+ KVWRLP  SPQ+ GKAL+N+L L Q E IT+I+P PED S+W+ L ++FAT+ GN
Sbjct: 599 MCYRMKVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGN 658

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RV 715
           VRRN L+DF  INR+GKIAMKLD  D I+ V     + D+LLT+  GQCVRF IS   R+
Sbjct: 659 VRRNALADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRL 718

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           F GR+S GVRGI L  GD+VISMAI+ H +A  +ER  Y+K  SA RR    +  E  + 
Sbjct: 719 FKGRDSTGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRRSEETEDAEPVAE 778

Query: 776 KNDSSVEGN---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +   V      +S ER   ++  EQF+LTVS KGFGKR+SS++FR S R GKGI A  V
Sbjct: 779 ADAEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVV 838

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  N  G L+A FP+++ DQI+LV+D G LIR PV+ +RIA R T+GV IF T  +E+VV
Sbjct: 839 NDRN--GRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVV 896

Query: 893 SVERIRESEIVDEAE 907
           SVERI E E  + +E
Sbjct: 897 SVERITEDETDEGSE 911



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 55/287 (19%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            ++  +L + ++     E  ++  +  G V+R  L+ + +  R GK    + + + D + 
Sbjct: 630 EVITSILPLPEDSSTWSELELIFATRSGNVRRNALADFESINRNGK--IAMKLDEGDSIV 687

Query: 579 DLFIVSTHTSVLFFSSLGF-------------------------------VYKEKVWRLP 607
            + I      VL  S  G                                V    +    
Sbjct: 688 QVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFKGRDSTGVRGIRLGDGDEVISMAILDHF 747

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSW------------------NNLYVV 649
             S + R   L    +L + E      P  E ++                       +V+
Sbjct: 748 EASAEERAAYLKQASALRRSEETEDAEPVAEADAEEVSAEAVTLSPERFAVMQAGEQFVL 807

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCV 706
             +  G  +R+   +F    R GK  + +   D    +L+     +++ I+L T  GQ +
Sbjct: 808 TVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVNDRNGRLLASFPIDEKDQIMLVTDGGQLI 867

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           R P+  +R+ AGRN+ GVR       ++V+S+  +   + D      
Sbjct: 868 RCPVDGVRI-AGRNTQGVRIFKTEAEEKVVSVERITEDETDEGSEGV 913


>gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4]
 gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4]
 gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4]
 gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 911

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/901 (61%), Positives = 677/901 (75%), Gaps = 7/901 (0%)

Query: 1   MTEHIISSD---EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M +               I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL
Sbjct: 1   MADDNDQPGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F   + G    ++YVK ARI G+V+GKYHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNF
Sbjct: 61  FAAHESGHLPERRYVKSARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGDP AA RYTE RL K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVN
Sbjct: 121 GSVDGDPAAAMRYTESRLAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGE++D C+A+ID+P + ++AL EI+ GPDFPTG +ILGR G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLILGRAGT 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AYATGRGSI++R  SHIE+   +RE ++ TEIPYQVNKA ++EKIAELV+EKR+  I+
Sbjct: 241 RQAYATGRGSIIMRAKSHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           DLRDESDR G R+V+E+KR A A+V+LNQLYRYT LQS F  NMVALNG +PE   L  +
Sbjct: 301 DLRDESDRDGMRIVVEIKRDAMAEVVLNQLYRYTPLQSSFGCNMVALNGGRPELMNLKDL 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L AF  FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR  L
Sbjct: 361 LLAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREAL 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R W A DI  LI L+DD  Y +  DGT  LSE+Q RAIL+LRL RLT LGRD++ +EL
Sbjct: 421 MARDWPAHDIAPLIALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDEL 480

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  EI + LDIL SR R+  I+K EL  V+    TPR+T I++    +EDED I RED
Sbjct: 481 KKLADEIADYLDILRSRVRIQAIVKTELAEVRALFATPRKTEIIDSDFSVEDEDLIARED 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTVSH GYVKRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ STHT VLFFS  G 
Sbjct: 541 MVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQ 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            YKEKVWRLP+ +P ARGKAL+NIL L N+GERI+TIMP PEDE+SW+ L V+FAT  GN
Sbjct: 601 AYKEKVWRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDETSWDTLDVMFATASGN 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRRNKLSDF  +NR+GKIAMKLD  D I+ VE C  E ++LLTT LGQC+RFP+  +RVF
Sbjct: 661 VRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPEQNVLLTTALGQCIRFPVEDVRVF 720

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GVRGI+LA+ D+VISMAI+   DA  +ER  Y+K   A     +G+ E   +  
Sbjct: 721 KGRDSTGVRGINLAQDDKVISMAILNAFDASPEERAGYLKMRRAVI-GDAGEAEAEPAEA 779

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++S    IS ER  E+   EQF+LT+S++GFGKR+SSY++R S R GKGI A  V+  N
Sbjct: 780 EEASEASAISLERYNEMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARN 839

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+T K ERVVSVE 
Sbjct: 840 --GNLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEH 897

Query: 897 I 897
           I
Sbjct: 898 I 898


>gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
 gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
          Length = 914

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/913 (59%), Positives = 685/913 (75%), Gaps = 9/913 (0%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +        E    I  VSIT+E+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MADSETPKPGGEPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+V+GKYHPHG+ ++YDAL RMAQ +++RL L++GQGNFGS
Sbjct: 61  MHENGYEWNKSYRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL+K  + LLDDL KDTVDF+ NYD S  EP VL A++PN+LVNG 
Sbjct: 121 VDGDAPAAMRYTEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGE+VD  VA++D+P ++ +AL++++ GPDFPTGA+ILGRTGI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALILGRTGIRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI++R    IE    +RE ++VTEIPYQVNKA M+EK+AELVR+KRI  IA++
Sbjct: 241 AYLTGRGSILMRAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G KP   TL  +L 
Sbjct: 301 RDESDRDGMRVVIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGKPGVLTLHDVLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P +AR  LM 
Sbjct: 361 AFIAFREEVISRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMA 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  LI LI D  + +G D T  LS  Q RAIL+LRL RLT LGRD+I  EL+ 
Sbjct: 421 RDWPAKDMAPLIALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL+SR R+  I++ EL+++K+E  TPRRT IVEG  D+EDED I RE+MV
Sbjct: 481 LAVEIADYLDILASRPRMRAIVRAELIAIKEEFGTPRRTEIVEGFGDLEDEDLIQREEMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS YRAQRRGGKGRS +  RDEDFVT LF+ STH  VLFFSS G VY
Sbjct: 541 VTVSHAGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+ +PQARGKALINIL L Q ERIT+++  PED      L ++FAT  G VRR
Sbjct: 601 KLKVWRLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N L+DF Q+NR+GKIAMKL+  + I  V  CT+++D+LLTT  G C+RFP++ +RVF GR
Sbjct: 661 NALTDFQQVNRNGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFPVTDVRVFKGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +SVGVRGI L  GD +ISMAI+ H DA  +ER+ Y+K     RR ++G+  E   ++ + 
Sbjct: 721 DSVGVRGIRLEDGDTIISMAIIGHVDASAEERLAYIKR----RRALAGEATEAGDVEAEE 776

Query: 780 SVE--GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                G++ ++R  E+  KEQFILTVSE G+GKRTSSY++R++ R GKGI A  V++ N 
Sbjct: 777 GASGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN- 835

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA FPV D DQI+LV+D G LIR PV+ IRI  RA++GV++F TA+ ERVVSVE I
Sbjct: 836 -GRLVASFPVEDQDQIMLVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHI 894

Query: 898 RESEIVDEAESTE 910
            +    + ++  E
Sbjct: 895 SDDAGAENSDGEE 907


>gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 965

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/903 (60%), Positives = 689/903 (76%), Gaps = 12/903 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  ++I DEM++SYL YA++VI+ RA+PD RDGLKPVHRRILF M + G +WNK Y 
Sbjct: 65  ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ +IYDAL RMAQD+S+RL L++GQGNFGSVDGDPPAA RYTE
Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL+D+ K+T+DF+ NYDG+ +EPVVL A  PN+LVNG  GIAVGMATNIP 
Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D C+A+IDNPDI +D L+E +  PDFPTG ++LGR G + AY TG+GS+V+RG
Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIMLGRQGARLAYHTGKGSVVVRG 304

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
               E+   DR+ I+++EIPYQVNKA+M+EKIA+LVREKRI  IADLRDESDR G RVV+
Sbjct: 305 RVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVVV 364

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R A  DV+LNQLYR++ LQ  F  NM+AL+  +PE   L   L+ FVAFREEV+ RR
Sbjct: 365 ELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGRPELMNLKQFLEIFVAFREEVISRR 424

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKARDRAHVLVGLAIAVAN+DEV+++IR +P+P +AR  LM R W A DI  LI 
Sbjct: 425 TKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPLIA 484

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LIDD  + +  DGT+ +SE Q RAILELRL RLT LGRD+I +EL  LG  I++ L IL 
Sbjct: 485 LIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSILR 544

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+R+L I++ EL ++K E  TPRRT I E   D EDED I REDMVVTVSH GY+KRVP
Sbjct: 545 SRARVLDIMRTELTAIKAEFATPRRTEIAESESDFEDEDLIQREDMVVTVSHQGYIKRVP 604

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGRSG+  +DEDFVT LF+ +THT +LFFSS G VYK KVWRLP  +PQ
Sbjct: 605 LSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLKVWRLPQSTPQ 664

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA+INIL L+ GE ITT+MP PEDE+SW++L+V+FAT+ G+VRRNKLSDF+QINR+G
Sbjct: 665 ARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKLSDFVQINRNG 724

Query: 673 KIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           KIAMK    D+ D I+ V+ CT+E+D+LLT   G+CVRFP++ +RVF+ R S GVRGI L
Sbjct: 725 KIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSRKSTGVRGIRL 784

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-------EEITSLKNDSSVE 782
              D++I+M+I+ H D    E   Y+K  +A RR +SG+         E    + +++ E
Sbjct: 785 GDDDKLIAMSIMRHVDVTPAEARAYLKQAAAMRRAVSGEGEEPEAEIVEAEEGEEEAAEE 844

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S ER  EL  +EQF+LTVSEKGFGKR+SSYD+R S R GKGI A  V+  N  G LV
Sbjct: 845 MTLSTERYSELGAREQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRN--GNLV 902

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A FPV+  DQI+LV+D G LIR PV+++R A RAT+GV IF TA DERVVSVER+ E+  
Sbjct: 903 ASFPVDVQDQIMLVTDAGQLIRCPVDDVRAAGRATQGVTIFRTAPDERVVSVERVEETGS 962

Query: 903 VDE 905
            +E
Sbjct: 963 DEE 965


>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
          Length = 922

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 586/913 (64%), Positives = 724/913 (79%), Gaps = 6/913 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+ID+P+I LD ++EII GPDFPTG +ILGR+G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I E L ILSSR R++GI+K EL ++++E  TPRRT    G  +M +ED IV EDMVV
Sbjct: 481 GVDITEYLHILSSRLRIMGIVKDELSTLREEFVTPRRTVFGFGNAEMNNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+ W+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +R+F GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT-SLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    DTE++    +N+ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENED 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SE-----IVDEAE 907
            E     + D++E
Sbjct: 901 PEDDANQLDDDSE 913



 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 96/289 (33%), Gaps = 51/289 (17%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F+   R+       +  +E    +    E+ ++  +  G   R P++  R    R   
Sbjct: 510 EEFVTPRRTVFGFGNAEMNNE----DLIVPEDMVVTVSHSGYIKRVPLNTYRA-QRRGGK 564

Query: 723 GVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           G  G+S    D V  + +      VL   +        +  +        G         
Sbjct: 565 GRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPL 624

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            +      I      E    E  ++  + +G  +R    DF   NR+GK   A  +   +
Sbjct: 625 QEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRNKLSDFIQVNRNGK--IAMKLDDED 682

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVS-- 893
           E   +++V    + D ++L +  G  IR PV ++RI   R + GV   +    ++V+S  
Sbjct: 683 E---ILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRNSVGVRGINMVDGDKVISMT 739

Query: 894 --------------------------------VERIRESEIVDEAESTE 910
                                           V  + E+E  DE E T+
Sbjct: 740 ILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENEDGDETELTD 788



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 106/379 (27%), Gaps = 38/379 (10%)

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY--KP 349
           +  D       S+     +    +     + +          +    VNM+ L       
Sbjct: 572 KDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWRLPIGTPQSRGRALVNMLPLQEGERIT 631

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV----VRIIR 405
               L      +          R     NK  D   V     IA+   DE     V    
Sbjct: 632 TIMPLPEDEAGWSELDVMFATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCT 691

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS-DGTMYLSEVQTRAILELRLAR 464
              +            +   D++  +         I   DG   +S      +    + R
Sbjct: 692 ERDDVVLTTANGQCIRFPVIDVRIFVGRNSVGVRGINMVDGDKVISMTILEHVEATSVER 751

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
                     NE  S G + ++ + +  +                        T + +  
Sbjct: 752 SA--YIKRAINERRSAGADTEDVVIVDENED-----------------GDE--TELTDER 790

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG---VVMRDEDFVTDLF 581
                 +   RE M++TVS  GY KR     +R   RGGKG          +   +   F
Sbjct: 791 YA----ELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIGKLVAAF 846

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V     ++  S  G + +  +  + I     +G   + I +  +GE++ ++    + E 
Sbjct: 847 PVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKG---VTIFNTAKGEKVVSVERISDPED 903

Query: 642 SWNNLYVVFATKHGNVRRN 660
             N L        G V  N
Sbjct: 904 DANQLDDDSEKHSGMVDVN 922


>gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
 gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
          Length = 923

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 579/914 (63%), Positives = 722/914 (78%), Gaps = 7/914 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+T+DF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLY YT LQ+ F  N+VALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAH+LVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  L+ LIDD  + I  + T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SR R++GI+K EL ++++E   PRRT    G ++M++ED IV EDMVV
Sbjct: 481 GVDITDYLHILASRLRIMGIVKDELSTLREEFAAPRRTIFGFGNIEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKLD   D ILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT-SLKND 778
           NSVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    D E++    +N 
Sbjct: 721 NSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRAAGADAEDVVIVDENG 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EI
Sbjct: 781 EGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV   DQI+LVSD G LIR+P+  IRIA R+TKGV IF+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVKAQDQIMLVSDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900

Query: 899 ESE-----IVDEAE 907
           + E     + D++E
Sbjct: 901 DPEDDANQLDDDSE 914


>gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
 gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
          Length = 908

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/898 (61%), Positives = 679/898 (75%), Gaps = 9/898 (1%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+   +
Sbjct: 6   DDTGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFE 65

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G    +KYVK ARI G+V+G+YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDG
Sbjct: 66  SGHLPERKYVKSARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDG 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE RL + A  LL D+ K+TVDF+ NYD S +EP VL AR+PN+LVNG GGI
Sbjct: 126 DPPAAMRYTESRLARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGE+VD CVA+ID+P + ++AL EI+ GPDFPTG +ILGR G + AY 
Sbjct: 186 AVGMATNIPPHNLGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMILGRAGTRQAYT 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI++R  SH+E+   +RE ++ TEIPYQVNKA ++EKIAELV++KRI  I+DLRDE
Sbjct: 246 TGRGSIIMRARSHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDE 305

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+E+KR A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +L AF 
Sbjct: 306 SDRDGMRIVVEIKRDAMADVVLNQLYRYTPLQTSFGANMVALNGGRPELMNLKDLLLAFN 365

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR  LM R W
Sbjct: 366 DFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDW 425

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL  L  
Sbjct: 426 PAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLAD 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI + LDIL SR+R+  I+K EL  V++   TPR+T I++    +EDED I REDMVVTV
Sbjct: 486 EIADYLDILRSRARIQAIVKHELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMVVTV 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKRVPLS YR+Q+RGGKGRSG+  RDEDFVT LF+ +THT VLFFS  G  YKEK
Sbjct: 546 SHAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEK 605

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           VWRLP+ +P ARGKAL+NIL L N+GERITTIMP PEDE+SW  L V+FAT  GNVRRNK
Sbjct: 606 VWRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVRRNK 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+Q+NR+GKIAMKLD  D I+ VE C  + ++LLTT LGQC+RFP+  +RVF GR+S
Sbjct: 666 LSDFVQVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDS 725

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN--DS 779
            GVRGI+L K D+VISMAI+   DA  +ER  Y+K     RR + GD+ E  +     + 
Sbjct: 726 TGVRGINLGKDDKVISMAILNAFDASPEERAGYLK----MRRAVIGDSGEEGTENGEAEE 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    IS ER  ++   EQF+LT+SE+GFGKR+SSY++R S R GKGI A  V+  N  G
Sbjct: 782 ASAAAISPERYTQMGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARN--G 839

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+T K ERVVSVE I
Sbjct: 840 NLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 897


>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 922

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 586/913 (64%), Positives = 726/913 (79%), Gaps = 6/913 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP+I LD ++EII GPDFPTG +ILGR+G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L ILSSR R++GI+K EL ++++E  TPRRT    G  +M++ED IV EDMVV
Sbjct: 481 GVDITDYLHILSSRLRIMGIVKNELSTLREEFVTPRRTVFGFGNAEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVF GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT-SLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    DTE++    +++ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDEDED 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVS+ G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SE-----IVDEAE 907
            E     + D++E
Sbjct: 901 PEDDANQLDDDSE 913



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG---VVMRDEDFVTDLFIVSTHTSVL 590
            RE M++TVS  GY KR     +R   RGGKG          +   +   F V     ++
Sbjct: 796 AREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIM 855

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G + +  +  + I     +G   + I +  +GE++ ++    + E   N L    
Sbjct: 856 LVSNGGQLIRVPIEGIRIAGRSTKG---VTIFNTAKGEKVVSVERISDPEDDANQLDDDS 912

Query: 651 ATKHGNVRRN 660
               G V  N
Sbjct: 913 EKHSGMVDIN 922


>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
          Length = 927

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 584/916 (63%), Positives = 718/916 (78%), Gaps = 6/916 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    ++ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTPLTERDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGS+
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVDGC+A+ID+P I LD +++II GPDFPTG +ILG +GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGSSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  ++DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ IL+A
Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL +AR+RAHVLVGLAIAVAN+DE++ +IR + +P+ AR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI  LI LIDD  + I  D T +LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAVDIAPLIKLIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LDIL+SRSR++GI+K EL ++++   TPRRT    G  DM+ ED I  E+MVV
Sbjct: 481 GVDITDYLDILASRSRIMGIVKDELNALREVFATPRRTVFGFGSADMDSEDLIAPEEMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+ALIN+L L QGERITTIMP P+DE  W  L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMK  +  DEILSVETCT+ +D++LTT  GQC+RFP+S +RVF GR
Sbjct: 661 KLSDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT-SLKND 778
           +S+GVRGI++   D+VISM I+ H +A   ER  Y+K + ++RR    D E+I    +  
Sbjct: 721 HSMGVRGINMGDSDKVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDIVIGDEES 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            +    +++ER  EL   EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD SK  EI
Sbjct: 781 EATVTELTDERYMELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV   DQI+LVSDKG LIRVPVN IRIA R+TKGV IF+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVEAQDQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900

Query: 899 ESEI----VDEAESTE 910
           E E+     DE ES +
Sbjct: 901 EPEVNASEPDEEESEQ 916



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 18/257 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ-RRGGKGRSGVVMRDEDFVTDL 580
           E   ++   +     D VV  +  G   R P+S  R    R   G  G+ M D D V  +
Sbjct: 680 EEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGRHSMGVRGINMGDSDKVISM 739

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED- 639
            I+     V   S+    Y ++V    I   +A G A    + +   E   T+    ++ 
Sbjct: 740 TILK---HVEATSTERSAYIKRV----ISERRAAG-ADDEDIVIGDEESEATVTELTDER 791

Query: 640 --ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQ 692
             E S +   ++  ++ G  +R+   DF    R GK     D        ++++      
Sbjct: 792 YMELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEIGKLVAAFPVEA 851

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           ++ I+L +  GQ +R P++ IR+ AGR++ GV   + AKG++V+S+  +   + +  E  
Sbjct: 852 QDQIMLVSDKGQLIRVPVNGIRI-AGRSTKGVTIFNTAKGEKVVSVERISEPEVNASEPD 910

Query: 753 CYMKHMSAQRRLISGDT 769
                        S + 
Sbjct: 911 EEESEQHCNAVDASDEI 927


>gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2]
 gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2]
          Length = 889

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 579/870 (66%), Positives = 707/870 (81%), Gaps = 2/870 (0%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY AL
Sbjct: 1   MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NY
Sbjct: 61  VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LM
Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNK
Sbjct: 181 ELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F
Sbjct: 241 ASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSF 300

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
             NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+
Sbjct: 301 GCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAI
Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRR
Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRR 480

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I  G  +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFV
Sbjct: 481 TEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFV 540

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           T LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP P
Sbjct: 541 TRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLP 600

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDI 696
           EDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+
Sbjct: 601 EDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDV 660

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K
Sbjct: 661 LLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLK 720

Query: 757 HMSAQRRL-ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              A+RR   + D ++I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY
Sbjct: 721 RSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSY 780

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +F IS R GKGIRATD SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R
Sbjct: 781 EFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGR 840

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 841 STKGVTIFNTADGEKVVSVERISDADSDEE 870



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 111/290 (38%), Gaps = 63/290 (21%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDED     D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 591 ERITTIMPLP---EDEDSWANLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEDEG 645

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITT- 632
           D +  +   +    VL   + G   +  V  + +     + G   +  ++L +G+++ + 
Sbjct: 646 DEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIG---VRGINLAEGDKVISM 702

Query: 633 ----------------------------------IMPFPED-------------ESSWNN 645
                                             I+   ED             E     
Sbjct: 703 AILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKARE 762

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM-----KLDSRDEILSVETCTQENDILLTT 700
             V+  ++ G  +R+   +F    R GK        K D   +++++      + ILL +
Sbjct: 763 ETVLTVSEFGYGKRSSSYEFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVS 822

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             GQ +R P+  IR+ AGR++ GV   + A G++V+S+  +  AD+D + 
Sbjct: 823 DGGQLIRVPVDGIRI-AGRSTKGVTIFNTADGEKVVSVERISDADSDEEN 871


>gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 884

 Score =  915 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/876 (63%), Positives = 671/876 (76%), Gaps = 2/876 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   +KKYVK AR+ G+V+GK
Sbjct: 1   MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL KAA  LL 
Sbjct: 61  YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD +  EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D CVA
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY  GRGSIV+RG   IE    +RE
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETIRKERE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +++TEIPYQVNKA M+E+IAELV+EK+I  I DLRDESDR GYRVVIELKR A ADV+L
Sbjct: 241 ALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F VNMVAL+  +P    L  +L  FV FRE VV RRTK+LL KARDRA
Sbjct: 301 NQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D++D++ LIDD  + I  D
Sbjct: 361 HILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRISPD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT+ LS  Q RAIL+LRL RLT LGRD+IR+EL+ L  EI + LDIL SR R+LGIIK E
Sbjct: 421 GTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIKTE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  VK E  TPRRT I+E   ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK
Sbjct: 481 LAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GR+G+  RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARGKALINIL L
Sbjct: 541 GRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QGERITTIMP PEDES+W NL V+FAT  GNVRRNKLSDF+ + RSG IAMKLD  + I
Sbjct: 601 EQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAI 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + V+ CT+ +D+LLT   GQC+RFP++ +RVF GR S+GVRGI+L +GD+VIS+AI+ H 
Sbjct: 661 VDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHV 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           +   DER  Y+K   A     + +     +   ++S    +++ER  E+   EQ +LTVS
Sbjct: 721 ETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVS 780

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+GKRTSSY++R + R GKGI A  V+  N  G LVA FPV D DQI+LV+DKG LIR
Sbjct: 781 VNGYGKRTSSYEYRTTGRGGKGIVAMSVN--NRNGNLVASFPVEDADQIMLVTDKGQLIR 838

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            PV  IRIA R+T+GV++F TA+DE VVSVE I E 
Sbjct: 839 CPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITEE 874



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 17/253 (6%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    R+  +  + +  DE    +   +E+ ++  +  G   R P+SA R    R   G
Sbjct: 487 EFATPRRTVIMEQEGEVEDE----DLIQREDMVVTVSHAGYVKRVPLSAYRA-QRRGGKG 541

Query: 724 VRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
             G+     D V  + +      VL   +        +  +        G          
Sbjct: 542 RAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPLE 601

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  I      E       ++  +  G  +R    DF    RSG  I A  + +   
Sbjct: 602 QGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSG--IIAMKLDENE- 658

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896
             A+V V    + D ++L    G  IR PV ++R+   R + GV   +  + ++V+S+  
Sbjct: 659 --AIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAI 716

Query: 897 IRESEIVDEAEST 909
           +R  E   +  S 
Sbjct: 717 LRHVETTSDERSA 729


>gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
          Length = 917

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/901 (60%), Positives = 678/901 (75%), Gaps = 7/901 (0%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++            I  VSITDE+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MADNDTPPQGGATPSDIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK+Y K AR+ G+V+GKYHPHGN ++YDAL RM Q +S+R+ LI+GQGNFGS
Sbjct: 61  MHENGYEWNKQYRKSARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE RL+K    LLD+LG+DTVDF+ NYD S  EP VL AR+PN+LVNG 
Sbjct: 121 VDGDPPAAMRYTEVRLEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+DG VA++D+P +D + L++ I GPDFPTGA+I+GR+GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIMGRSGIRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI++R  + IE    +RE I++TEIPYQVNKA M+EKIAELVR+KR+  IA++
Sbjct: 241 AYMTGRGSIMMRARATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G +P   TL   L 
Sbjct: 301 RDESDREGMRVVIEVKRDAQADVVLNNLYRMTPLQTSFGVNMVALSGGRPAVMTLHDTLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DE++++IR +P+P TAR  LM+
Sbjct: 361 AFIAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  L+ LI D  + + SDGT  LS  Q RAIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RHWPAKDVASLVALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI E L+IL+SR R+  II++ELL+++ E +TPRRT I EG  D++DED I REDMV
Sbjct: 481 LALEIAEYLEILASRPRMRAIIREELLALRAEFNTPRRTEITEGFGDLDDEDLIAREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRS +  RDEDFVT LF+ STH  VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP  +PQARGKALINIL L   ERIT+I+P PE+    +   ++FAT  G VRR
Sbjct: 601 KLKVWRLPAAAPQARGKALINILPLQPDERITSIVPLPENLEEHSLWQIMFATTGGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N L+DF Q+NR+GKIAMKL+  ++I SV+ C +  D+LLTT  G C+RFP+  +R+F GR
Sbjct: 661 NALADFSQVNRNGKIAMKLEEGEQIASVQLCNEHQDVLLTTANGACIRFPVPEVRLFKGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +SVGVRGI L +GD++ISMAI+ H DA  +ER+ Y++      R  + +   I       
Sbjct: 721 DSVGVRGIRLEEGDRLISMAIINHTDAAAEERVQYLRQ----SRAQAAEDAPIELEGEAP 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +   +  E++  EQFILT+SE G+GKRTSSY++R++ R GKGI A  V++ N  G
Sbjct: 777 AAEGKLDPVKFLEMETNEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--G 834

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LV+D G LIR PVN IRI  R+++GV++F TA DERVVSVE I E
Sbjct: 835 KLVASFPVRDADQIMLVTDGGQLIRCPVNGIRIVGRSSQGVIVFDTAADERVVSVEHISE 894

Query: 900 S 900
            
Sbjct: 895 D 895


>gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3]
          Length = 922

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 585/913 (64%), Positives = 726/913 (79%), Gaps = 6/913 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LD+L+SR R++GI+K EL +++ E  TPRRT    G  +M++ED IV EDMVV
Sbjct: 481 GVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTPRRTIFGFGNAEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  +DEDFVT LF+ +THTSVLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L + ER+TTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVF GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFMGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR+   D  + +   +++ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDEDEE 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 EIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SE-----IVDEAE 907
            E     + D++E
Sbjct: 901 PEDDANKLDDDSE 913



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV---VMRDEDFVTDLFIVSTHTSVLF 591
           RE M++TVS  GY KR     +R   RGGKG          +   +   F V     ++ 
Sbjct: 797 REQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIGKLVAAFPVKAQDQIML 856

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            S  G + +  +  + I     +G   + I +  +GE++ ++    + E   N L     
Sbjct: 857 VSDGGQLIRVPIEGIRIAGRSTKG---VTIFNTAKGEKVVSVERISDPEDDANKLDDDSE 913

Query: 652 TKHGNVRRN 660
              G V  N
Sbjct: 914 KHSGMVDVN 922


>gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
 gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
          Length = 927

 Score =  908 bits (2346), Expect = 0.0,   Method: Composition-based stats.
 Identities = 540/917 (58%), Positives = 679/917 (74%), Gaps = 9/917 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++  +        I  VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MADNDDTGPGAPGSDIRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +     ++ YVKCARI G+VMGKYHPHG++AIYDAL RMAQ +S+RL LI+GQGNFGSV
Sbjct: 61  HEQNHTPDRPYVKCARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL + A  LL+D+  DTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTESRLARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+IDNP++ ++ LM  + GPDFPTG  ILGRTGI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAILGRTGIQSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++ R    +E    +RE ++VTEIPYQ+NK++++EKIA+LVREKR+  I+DLR
Sbjct: 241 YLTGRGSVLTRAKVEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A A+V+LNQL+RYT+LQS F+ NM+ALNG +PE  TL   L A
Sbjct: 301 DESDRDGMRIVIELKRDAVAEVVLNQLWRYTALQSSFACNMIALNGGRPEMLTLKDFLTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVV RRTKYLL KARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  LM R
Sbjct: 361 FVDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMAR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW A D+  L+ LI D  + +  +G   LSE Q RAILELRL RLT LGR++I   LN L
Sbjct: 421 SWPAHDMAPLVLLIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            +EI + L+IL SR RL  I+K+E+L+VK    TPRRT I++    ++DED I REDMVV
Sbjct: 481 AVEIADYLEILHSRERLFSIVKEEMLAVKAAHATPRRTIILDSATGVDDEDLIQREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPL+ YRAQRRGGKGRS +  RDEDFV  LF+ STH  VLFFSS G VYK
Sbjct: 541 TVSHHGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+ +PQARGKAL+N+L L QGERITTIMP PE+E +W  L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF Q+NR+GKIAM++D  +EI+ V+ C ++ D+LLTT  GQC+RFP++ +RVF GR+
Sbjct: 661 KLSDFAQVNRAGKIAMRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFPVTDVRVFKGRD 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD------TEEITS 774
           S+GVRGISL++GD+VIS+AI+ H +AD  ERI Y+K   A     S +       +    
Sbjct: 721 SMGVRGISLSEGDRVISLAILRHTEADSGERIAYLKMRRAVAGEASAEAGAESPADAQGE 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              + +   ++S +R   +   EQ ILT+S  G+GKRTSSY++RI+ R GKGI A  V+ 
Sbjct: 781 DGAEDAGPQSLSPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNP 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA  PV D D+I+LV++ G LIR PV  IR+A R T+GV++F+T  DE+VVSV
Sbjct: 841 RN--GLLVASMPVEDGDEIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTGADEQVVSV 898

Query: 895 ERIRESEIV-DEAESTE 910
           ERI E +    E E  E
Sbjct: 899 ERITEEDAARGETEEGE 915


>gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
 gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
          Length = 950

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 568/893 (63%), Positives = 702/893 (78%), Gaps = 6/893 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+   + Y K A + 
Sbjct: 27  VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEVMGKYHPHG++AIYDAL RMAQDWSLR  LIEGQGN+GS+DGDPPAA RYTECRL+K 
Sbjct: 87  GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL D+ K+TVDF+ NYDG  QEPVVL A +PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGCVA+IDNP I L  +MEII GPDFPTGA++LG+ GI++AY+TGRGS+++RG  H E 
Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILLGKAGIQSAYSTGRGSLLMRGKVHTET 266

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             GDRE I+VTE+PYQVNKA M+EK+AELVR+KRI  I+D+RDESDR+GYRVV+ELKR A
Sbjct: 267 IRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRDA 326

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           SADVILNQLYR+T LQ+ F  NMVALNG KPE+ TL+ +L AFVAFRE+VV RRTKYLL 
Sbjct: 327 SADVILNQLYRFTPLQTSFGANMVALNGGKPEQLTLMDMLSAFVAFREDVVNRRTKYLLR 386

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R W+A D+  L+ LIDD  
Sbjct: 387 KARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDDPR 446

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + I   GT  LSE Q RAIL+LRL RLT LGRD+I +EL  +G EIK+ L+ILSSR+R++
Sbjct: 447 HRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTRVM 506

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK EL +++DE  TPRRT + EG  D+EDED I REDMVVTVSH GY+KRVPLSVYR+
Sbjct: 507 QIIKDELTAIRDEFATPRRTELSEGAADLEDEDLIPREDMVVTVSHGGYIKRVPLSVYRS 566

Query: 559 QRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           QRRGGKGRSG+ ++ DED VT LF+ +THT VLFFSS G VYKEKVWRLP+ +PQ RGKA
Sbjct: 567 QRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLTTPQGRGKA 626

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+N+L L + ERIT+I+P P +E +     V+FAT  G VRRNKLSDF  +NR+GKIAMK
Sbjct: 627 LVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMK 686

Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           LD   D IL V TC++++D+LLT   GQC+RFP + +RVFAGRNSVGVRGISL K + V+
Sbjct: 687 LDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVV 746

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SMAI+ H DA  +ER  Y+K     RR + GDT   +    ++  +  I +ER  EL  +
Sbjct: 747 SMAILRHVDASAEERATYLK----MRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAR 802

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ILTVSE G+GKR+SSY+FR S R GKGIRATD ++++++GALVA FPV + DQ++LV
Sbjct: 803 EEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLV 862

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D+G +IRVPV+ I +  RAT GV IF TA  ERVVSVERI +    +  E+ 
Sbjct: 863 TDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVSVERIPDQGTDETGEAD 915



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 106/321 (33%), Gaps = 56/321 (17%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS------- 567
            R T I+     + +E+       V+  +  G V+R  LS +    R GK          
Sbjct: 637 ERITSILP----LPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMKLDDEQD 692

Query: 568 -----GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY--------------------KEK 602
                     D+D    L   S+   + F ++   V+                       
Sbjct: 693 SILGVATCSEDDDV---LLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVVSMA 749

Query: 603 VWRLPIGSPQARGKALINILSL--------NQGERITTIMPFPED---ESSWNNLYVVFA 651
           + R    S + R   L    ++        +  E     +   ++   E       ++  
Sbjct: 750 ILRHVDASAEERATYLKMRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAREEMILTV 809

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSR--DEI---LSVETCTQENDILLTTKLGQCV 706
           +++G  +R+   +F    R GK     D+   D++   ++      E+ +LL T  GQ +
Sbjct: 810 SEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLVTDRGQVI 869

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R P+       GR + GV     A G++V+S+  +     D           S       
Sbjct: 870 RVPV-DGIGMKGRATGGVTIFRTADGERVVSVERIPDQGTDETGEADADVTDSVAPDGGD 928

Query: 767 GDTEEITSLKNDSSVEGNISE 787
           GD      +++    EG+I E
Sbjct: 929 GDGGSDGPMRDAEGDEGSIDE 949


>gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510]
 gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510]
          Length = 927

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/909 (54%), Positives = 665/909 (73%), Gaps = 9/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+   +         I  ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSNTPLPP----ASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +  K Y K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S+RL LI+GQGNFGS+
Sbjct: 57  KEGGYDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSM 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL KAA  LLDD+ KDT+DF+ +YD S +EP V+ AR+PN+LVNG G
Sbjct: 117 DGDPPAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+D C A IDNPD+ LD LME + GPDFPTG +ILGR+G + A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLILGRSGSRAA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGSI++R  +H E+   DR  I+ TEIPYQVNKA ++E+I E+V +K I  IADLR
Sbjct: 237 LQTGRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR A  DV+L QL+R+T LQ+ F VNM+ALNG +PE   L+ ++ A
Sbjct: 297 DESDRDGVRVVIELKRDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGRPELMNLLDVITA 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FRE+V+ RRT++LL KAR+RAH LVGLA+AVANLD ++ +IR +P+P  AR E+M R
Sbjct: 357 FVRFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNR 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W   D+  LI+LID+    +   GT  LSEVQ RAIL+LRL RLTGL RD I  EL  +
Sbjct: 417 EWPVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDV 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + L  L++R +L+GI++ EL+ +K+   TPRRT I +   + + ED I REDMVV
Sbjct: 477 TDQIADFLATLANRPKLMGILRDELVEMKERFGTPRRTEIQDLEFEADIEDLIQREDMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVS  GYVKRVPLS YRAQ+RGGKGR+G+ M+ ED V+DLF+ +THT +L FS+ G VYK
Sbjct: 537 TVSQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSNRGMVYK 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP+G+PQARGKA +N+L L  GE ITT++P PEDE++W +L+VVFAT  GNVRRN
Sbjct: 597 LKVYRLPLGNPQARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGNVRRN 656

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           ++SDF  I  +G IAMKL +  + ++ V TC++ +DILL T+ G+C+RFP+  +RVFAGR
Sbjct: 657 RMSDFANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGR 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S GVRGI LA GD+V+S++I+ H DA  +ER  + K    +   +  + E         
Sbjct: 717 TSTGVRGIKLADGDEVVSLSILAHVDATPEERAAFFK--MKRDEGLEMEGEAAPEADEVP 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +++ER +ELK KEQ+ILTVS++G+GKR+SSY++R + R G+GI   ++ + N  G
Sbjct: 775 TDSVTLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERN--G 832

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++VA FPV  N Q+++V++ G +IR+P++++R+A R T GV +F    DERVVSV  I E
Sbjct: 833 SIVAAFPVESNHQVMMVTNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAE 892

Query: 900 SEIVDEAES 908
            +    A++
Sbjct: 893 EDGETGADA 901



 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 96/270 (35%), Gaps = 25/270 (9%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577
           ++ E    +         D ++  +  G   R P+   R    R   G  G+ + D D V
Sbjct: 673 KLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGRTSTGVRGIKLADGDEV 732

Query: 578 TDL-----FIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERIT 631
             L        +      FF     + +++   +    +P+A      +           
Sbjct: 733 VSLSILAHVDATPEERAAFF----KMKRDEGLEMEGEAAPEADEVPTDS----------V 778

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           T+     +E      Y++  +  G  +R+   ++    R G+    ++  +    I++  
Sbjct: 779 TLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAF 838

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + +++ T  GQ +R P+  +RV AGR ++GV    +   ++V+S+A +   D + 
Sbjct: 839 PVESNHQVMMVTNGGQVIRMPLHDVRV-AGRKTLGVTLFRVGADERVVSVATIAEEDGET 897

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKND 778
                      A     S      T+  ND
Sbjct: 898 GADAGAESGGDANGSDGSIGDAGGTAAPND 927


>gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
 gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
          Length = 922

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/909 (55%), Positives = 665/909 (73%), Gaps = 12/909 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  I +        I+ ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTSTIPTP-----SDISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G +  K Y K ARI G+VMGKYHPHG+ AIYDA+ RMAQD+S+RL LI+GQGN+GS+
Sbjct: 56  KDGGYDSTKPYKKSARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSM 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL KAA FLLDD+ K+TVDF+PNYD S  EP VL A++PN+LVNG G
Sbjct: 116 DGDPPAAMRYTEARLAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAG 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+D C A IDNP+I +D L++I+ GPDFPTGA+ILGR+GI++A
Sbjct: 176 GIAVGMATNIPTHNLGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALILGRSGIRSA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSIV+R  + IE+   DR  IVVTEIPYQVNKA + E+IAE+V EK +  I+D+R
Sbjct: 236 YHTGRGSIVMRAKTDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR A ADV+LNQL+R+T LQ+ F VNM+ALNG +PE   L  I+ A
Sbjct: 296 DESDRDGVRVVIELKRDAVADVVLNQLFRFTPLQTSFGVNMLALNGGRPELLDLKSIIAA 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FRE+V+ RRT++ L KAR+RAH LVGLA+AVAN+DE++ +IR +P+P TAR ++M R
Sbjct: 356 FVRFREQVITRRTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LID+    +   GT  LSE Q +AIL+LRL RLTGL RD I  ELN +
Sbjct: 416 EWPALDVAPLIQLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQV 475

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+  L IL+ R  LL I++ EL+ +K     PRRT I E   + + ED I REDMVV
Sbjct: 476 VDQIRHLLAILADRGLLLDILRGELVDMKARFGNPRRTTIEELEFEADVEDLIQREDMVV 535

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            V+  GY+KRVP+S YRAQ RGGKGRSG+ ++ ED V+DLF+ +THT +LFF++ G VY 
Sbjct: 536 IVTQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYT 595

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G+PQ RGKAL+N+L L +G+ ITT+MP PED++SW +L+V+FAT  G VRRN
Sbjct: 596 LKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGVRRN 655

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LSDF  I  +G IAMKL +  + +++   C++ +D+LL+T+LG+C+RFP+  IRVF+GR
Sbjct: 656 RLSDFANIRSNGLIAMKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVFSGR 715

Query: 720 NSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            S GVRGI L   GD+VI M+I+ H D   ++R  Y+K     R+ +   T+   +   +
Sbjct: 716 TSTGVRGIKLVEDGDEVIGMSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAPDVE 775

Query: 779 S---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +        + +E   E++  E+ ILTVSE+GFGKRTS+Y++R++ R G+GI   D+ + 
Sbjct: 776 AEPVETSLVLPQELFIEMQAAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGER 835

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N+  A+ AVFP+++ DQ++++SD G +IR+PV++IR+  R +KGV +F    DERVVSV 
Sbjct: 836 NK--AIAAVFPISETDQVMMISDNGQVIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSVA 893

Query: 896 RIRESEIVD 904
           R+ E    D
Sbjct: 894 RLAEEAAGD 902


>gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506]
 gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506]
          Length = 918

 Score =  903 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/907 (60%), Positives = 684/907 (75%), Gaps = 12/907 (1%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++   +  ++     I  VSITDE+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +      + Y K AR++G+ MGKYHPHGN AIYDAL R+AQD+S+RL LI+GQGNFGS
Sbjct: 61  MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAAERYTE RL K A  LLDDL KDTVDF+ NYDG  QEP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEVVD CVA+ID PD+D++ L++ I GPDFPTGA+ILGR+GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALILGRSGIRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+R  + IE+   DR+ I+VTEIPYQVNKA M+E+IAELVR+KR+  IA++
Sbjct: 241 AYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES R+G RVV E+KR A ADV+LN LYR ++LQ+ F  NMVALNG KP   TL  +L 
Sbjct: 301 RDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALNGGKPALMTLHDLLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFVAFREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+  IR SP+P TAR  LM 
Sbjct: 361 AFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREALMT 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  LI LIDD  + +  DGT  LS  Q RAIL+LRL RLT LGRD++ +EL+ 
Sbjct: 421 RDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           + +EI++ LDIL+SR R+  I+K ELL+VK E  TPR+T I +   D EDED I REDMV
Sbjct: 481 IAVEIRDYLDILASRERIRTIVKDELLAVKAEFGTPRKTEITDAEGDFEDEDLIAREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS YR+QRRGGKGRS +  RDEDFVT +F+ STH  VLFFSS G VY
Sbjct: 541 VTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+ +PQARGKAL+NIL L +GERIT+IM  P DE +W+ L ++F+T  G VRR
Sbjct: 601 KLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALP-DEETWSRLQIMFSTTGGTVRR 659

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N+LSDF  +NR+GKIAMKL+  + I  V+ CT+++D+LLT+  GQC+RFP+  +RVF GR
Sbjct: 660 NELSDFTNVNRNGKIAMKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--------DTEE 771
           +S+GVRGI L +GD++ISMAI+ H DA  +ER  Y+K  +A RR  +G        +T  
Sbjct: 720 DSMGVRGIQLEEGDRLISMAIIRHVDATAEERAAYIKLANAVRRSQAGLENGAEEPETVA 779

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
               +   +   +I + R  E+   EQFILT+SE GFGKRTSS+++R + R GKGI A  
Sbjct: 780 DADAEEAVAAPADIDQARYVEMSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMA 839

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V++ N  G L+A FPV + DQI+LV+D G LIR PVN IRI  R ++GV++F+TA+DE+V
Sbjct: 840 VNERN--GPLIASFPVEEADQIMLVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAEDEKV 897

Query: 892 VSVERIR 898
           VSVER+ 
Sbjct: 898 VSVERVS 904



 Score = 94.2 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 16/249 (6%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    ++     + D  DE    +   +E+ ++  +  G   R P+S  R    R   G
Sbjct: 512 EFGTPRKTEITDAEGDFEDE----DLIAREDMVVTVSHAGYIKRVPLSTYRS-QRRGGKG 566

Query: 724 VRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
              +     D V  + +   HA   +      +  +   R  +S       +L N   + 
Sbjct: 567 RSAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLT 626

Query: 783 GNISEERCQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                     L  +E +    I+  +  G  +R    DF   NR+GK   A  + +    
Sbjct: 627 EGERITSIMALPDEETWSRLQIMFSTTGGTVRRNELSDFTNVNRNGK--IAMKLEEGE-- 682

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERI 897
            A+  V    + D ++L S KG  IR PV E+R+   R + GV      + +R++S+  I
Sbjct: 683 -AIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRLISMAII 741

Query: 898 RESEIVDEA 906
           R  +   E 
Sbjct: 742 RHVDATAEE 750


>gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
 gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
          Length = 941

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/889 (62%), Positives = 695/889 (78%), Gaps = 6/889 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++  K Y K A 
Sbjct: 38  ENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLDHTKSYRKSAA 97

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GEVMGKYHPHG+++IYDAL RMAQD+++R +LI+GQGNFGS+DGD PAA RYTECRL 
Sbjct: 98  VIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSIDGDKPAAMRYTECRLA 157

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + +  LLDD+ K+TVDF+ NYDGS +EP+VL ARYPN+LVNG GGIAVGMATNIP HNLG
Sbjct: 158 RISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAGGIAVGMATNIPPHNLG 217

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DGC+A+ID PDI+L  LME+I GPDFPTG +ILGR GIK+AY TGRGS+++RG +HI
Sbjct: 218 EVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMILGRAGIKSAYETGRGSVIMRGKAHI 277

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E +  DRE I++ E+PYQVNKA+M+EKIAELVR+KRI  I+ +RDESDRQGYRVVIE+KR
Sbjct: 278 ETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAVRDESDRQGYRVVIEVKR 337

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A AD++LNQLYRYT LQS F  N+VALNG KPE+  L+ +L+AFV FREEVV RRTK+L
Sbjct: 338 DAVADIVLNQLYRYTPLQSSFGCNLVALNGGKPEQMNLVDMLRAFVGFREEVVTRRTKFL 397

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           LNK R RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD
Sbjct: 398 LNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLMERRWPAKDVAPLIALIDD 457

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R
Sbjct: 458 PRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNLIGAEIADYLDILSSRAR 517

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L I++ EL  V++E   PRRT I++   + +DED I RE+MVVTV+H GY+KRVPL+ Y
Sbjct: 518 VLDIVRTELGEVREEFANPRRTEIIDSGYEHDDEDLIAREEMVVTVTHGGYIKRVPLAAY 577

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ RGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G  YK KVW+LP+  PQ RGK
Sbjct: 578 RAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIAYKLKVWKLPLAQPQGRGK 637

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L L  GE ITTIMP PEDE SW++L V+FAT  G VRRNKLSDF+Q+NR+GKIAM
Sbjct: 638 AMVNLLPLQAGETITTIMPLPEDEGSWDSLDVMFATTRGTVRRNKLSDFVQVNRNGKIAM 697

Query: 677 KL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           KL D  D I+ VE C+  +D+LLT+  G  +RFP+  +RVF  RNSVGVRGI +   D V
Sbjct: 698 KLDDENDGIIGVEVCSASDDVLLTSSAGYGIRFPVDDVRVFNSRNSVGVRGIRMGASDHV 757

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEERC 790
           ISMAI+    A  +ER+ Y+K  SA RR  S D  E     + +   + +V  ++ EER 
Sbjct: 758 ISMAIMRGFAATPEERVSYIKQASALRRAASADDGEDADLDVVADDEEVTVASSLPEERY 817

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILT++++G+GKR+SSYDFR S R GKGI+ TDVSK  EIG LV  FPV D+
Sbjct: 818 IEMGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKGIKVTDVSKEGEIGQLVGAFPVEDS 877

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           DQI+LVS+ G LIRVPV+ IR ASR+TKGV +F TAKDE VV+VERI E
Sbjct: 878 DQIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAVERISE 926


>gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
 gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
          Length = 911

 Score =  901 bits (2328), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/899 (60%), Positives = 673/899 (74%), Gaps = 6/899 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI+F M + G   +K YVK
Sbjct: 16  SDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMFSMHENGHTPDKPYVK 75

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL LI+GQGNFGSVD DPPAA RYTE 
Sbjct: 76  SARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFGSVDNDPPAAMRYTES 135

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL+DL + TVDF+PNYD    EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 136 RLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNGAGGIAVGMATNIPPH 195

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  +A+ID PD+ +  LMEI+ GPDFPT A ILGR GI+NAY+TGRGSI++R  
Sbjct: 196 NLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATILGRGGIRNAYSTGRGSIIMRAK 255

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE    +RE I+ TEIPYQVNKAA++E+IAELVREK+I  +ADLRDESDR G R+V+E
Sbjct: 256 AEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVADLRDESDRDGMRIVVE 315

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A ADV+LNQL+R+T+LQS F VNM+ALNG +PE  TL  +L AFV FRE VV RRT
Sbjct: 316 LKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGRPELLTLKDVLVAFVDFRESVVTRRT 375

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ LNKARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  LM+R W A D+  L+ L
Sbjct: 376 KFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALMERLWPAKDMAPLVAL 435

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I D  + +  DGT+ LSE Q RAIL+LRL RLT LGR++I   LN L  EI E L+IL S
Sbjct: 436 IADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALNKLAAEIAEYLEILRS 495

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R +L GI+K E+++VK    TPRRT+IV+G  D+EDED I REDMVVTVSH GY+KRVPL
Sbjct: 496 REKLFGIVKDEMIAVKTAYATPRRTQIVDGDGDVEDEDLIAREDMVVTVSHAGYIKRVPL 555

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQRRGGKGRSG+  ++EDFV  LF+ STHT VLFFSSLG  YKEKVWRLP+ +PQA
Sbjct: 556 STYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRAYKEKVWRLPLAAPQA 615

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGKAL+N+L L Q ERITTIMP PEDESSW  L  +FAT  G VRRNKLSDF  + RSG 
Sbjct: 616 RGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGTVRRNKLSDFSDVRRSGI 675

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKLD  + I+ V T ++ +D+LLTT+ GQC+RFP++ +RVF  R+S+GVRG++LA  D
Sbjct: 676 IAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVFQSRSSMGVRGVALAAED 735

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQ 791
           +VIS++I+ H +A  +ER  Y+K  +AQRR  + +               +I  SE R +
Sbjct: 736 RVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAAEAEESSASIELSEARFR 795

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +++  EQ ILTVSE G+GKR+SS+++RI+ R GKGI A  V+  N  G LVA FPV    
Sbjct: 796 DMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARN--GKLVASFPVGSGA 853

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +I+LV+D G LIR PV  IRI  R T+GV++F TA+ ERVVSVE I E+    EAE  E
Sbjct: 854 EIMLVTDGGQLIRCPVEGIRIVGRGTQGVIVFDTAEGERVVSVEHIGETGA--EAEVAE 910


>gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 929

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/900 (60%), Positives = 673/900 (74%), Gaps = 4/900 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H  +        I  VS++DEMQ+SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MADHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +     ++ YVK ARI G+VMGKYHPHG+ AIYDAL RMAQ +S+RL LI+GQGNFGSV
Sbjct: 61  HENNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL + A  LL D+  DTVDF+PNYDG   EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+IDNP++ ++ L  I+ GPDFPTG  ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGS+++R    IE+    RE ++VTEIPYQVNKA ++EKIAELVREKRI  I+DLR
Sbjct: 241 YATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+VIE+KR A  D++LNQL+RYT+LQS F  NM+ALNG +PE  TL   L A
Sbjct: 301 DESDRQGMRIVIEIKRDAVPDIVLNQLWRYTALQSSFPCNMIALNGGRPETLTLRDFLTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRTKYLL KARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  L  R
Sbjct: 361 FIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCAR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LI D  +T+  +GT+ LSE Q RAILELRL RLT LGRD+I   LN L
Sbjct: 421 DWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI + LDIL SR+RL GIIK E+++VK+   TPRRT I++    ++DED I REDMVV
Sbjct: 481 AAEIADYLDILGSRARLFGIIKDEMIAVKEAHATPRRTIILDSDAGVDDEDLIQREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  RD+DFV  LF+ STH  VLFFSS G VYK
Sbjct: 541 TVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFFSSRGQVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+ +PQA GKAL+NIL L Q ERITTIMP PEDE  W +L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF Q+NR+GKIAM+LD  ++I+ V+ CT+++D+LLTT  GQC+RF ++ +RVF GR+
Sbjct: 661 KLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRD 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GVRGI+L +GD+VIS+AI+ H +AD DER  Y+K   A     + +        N   
Sbjct: 721 SMGVRGIALGEGDRVISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEE 780

Query: 781 VEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             G  ++S ER  E+   EQ ILT+S  G+GKRTSS+++RI+ R GKGI A  V+  N  
Sbjct: 781 ALGSTSLSLERYAEMSAGEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARN-- 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA  PV + D I+LV++ G LIR PV  IR+A R T+GV++F+TA+DE+VVSVERI 
Sbjct: 839 GKLVASMPVEEGDGIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTAEDEQVVSVERIP 898



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 108/313 (34%), Gaps = 63/313 (20%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+    D +          V+  +  G V+R  LS +    R GK    + + +
Sbjct: 627 DERITTIMPLPEDEKQW----ESLDVMFATTRGTVRRNKLSDFAQVNRAGK--IAMRLDE 680

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITT 632
            + + D+ I +    VL  ++ G   +  V  + +     + G   +  ++L +G+R+ +
Sbjct: 681 GEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRDSMG---VRGIALGEGDRVIS 737

Query: 633 IMPFPEDESSWNNLYVVF------------------------------------------ 650
           +      E+  +                                                
Sbjct: 738 LAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEEALGSTSLSLERYAEMSA 797

Query: 651 -------ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTT 700
                   + +G  +R    ++    R GK  + +       ++++     + + I+L T
Sbjct: 798 GEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNGKLVASMPVEEGDGIMLVT 857

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GQ +R P+  IRV AGR + GV   + A+ +QV+S+  +   +A+  E     +    
Sbjct: 858 NGGQLIRCPVEGIRV-AGRGTQGVIVFNTAEDEQVVSVERIPEDEAERGEEEGPGEQGPL 916

Query: 761 QRRLISGDTEEIT 773
                S + +   
Sbjct: 917 GDSGPSDNGDTPE 929


>gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
 gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
          Length = 927

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/910 (53%), Positives = 664/910 (72%), Gaps = 13/910 (1%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S        I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G 
Sbjct: 1   MSDISSTHHDIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +W + Y K ARI G+VMG+YHPHG++AIYDA+ RMAQD+S+RL L++GQGNFGS+DGDPP
Sbjct: 61  DWTRPYRKSARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL KAA  LL D+ K+TVD+ PNYD + +EP VL A YPN+LVNG GGIAVG
Sbjct: 121 AAMRYTEARLAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEVVD C+A++DNP I +D L+ ++ GPDFPTG +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHNLGEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLILGRSGIREAYHTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+V+RG + IE+   DR  IVVTEIPYQVNK+ ++E+I E+VR+K +  I+DLRDESDR
Sbjct: 241 GSVVMRGRAEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVV+ELKR A  +V+LNQLYRYT LQ+ F VNM+ALN  +P +  L  ++ AFV FR
Sbjct: 301 DGVRVVVELKRDAIGEVVLNQLYRYTQLQTSFGVNMLALNRGRPVQMNLRDVIFAFVEFR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ RRT++LL+KAR+RAHVL GL +A+ NLD V+ +IR +P+   ARR+L   +W A+
Sbjct: 361 EEVITRRTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPAT 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ D I +IDD  + +  +GT  LS+ Q RAIL+LRL RLTG+ R  + +E   +   IK
Sbjct: 421 DVIDFIAIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIK 480

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + LDIL+SR RL+G+++ ELL  ++     RRT I+E   + + ED I REDMVVTVS+ 
Sbjct: 481 DYLDILTSRPRLMGVLRDELLQTREAWANDRRTEIMESEFEHDIEDLIAREDMVVTVSYS 540

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPL+ YRAQ+RGGKGR+G+  RDED+V  L++ ++H+ +LFF+S G VY+ K +R
Sbjct: 541 GYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKTYR 600

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G+PQ+RG+ ++N+L L +GE I T+MP P DESSW+ L+V+FAT  G +RRN LSDF
Sbjct: 601 LPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALSDF 660

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             INR+GK AMKLD  D +++V  C + +D+LL  + G+ +RF ++ +R+F GR+S+GVR
Sbjct: 661 TNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVRLFRGRDSLGVR 720

Query: 726 GISLAKGDQVISMAIVLH-----ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           GI LAKGD+V+SM+I+ H      D + +ER  Y++  +  RR      E+       S+
Sbjct: 721 GIRLAKGDEVVSMSILHHVDYESVDGEQNERDVYLRQAAWIRRGSGEGDEDA------SA 774

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            +  + E+R   L   E+F+L+V+EKG+GKRTS++++R++ R G+GI + DV+  N  G 
Sbjct: 775 PDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKN--GP 832

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V  FPV   DQI+LV+D G +IR PV++IR+A+R T+GVV+F   +DE+VVSV  + E+
Sbjct: 833 VVTAFPVTPTDQIMLVTDGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGEN 892

Query: 901 EIVDEAESTE 910
              D  E  +
Sbjct: 893 GDDDNVEVAD 902



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 108/291 (37%), Gaps = 53/291 (18%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G ++R  LS +    R GK    + + + D +  +   +    VL  +  G  
Sbjct: 643 VMFATAAGTIRRNALSDFTNINRAGK--RAMKLDEGDRLIAVMPCNEGDDVLLAARSGKA 700

Query: 599 YKEKVWRLPI----------GSPQARGKALINILSL----------NQGERITTIMPFP- 637
            + +V  + +          G   A+G  ++++  L           Q ER   +     
Sbjct: 701 IRFQVADVRLFRGRDSLGVRGIRLAKGDEVVSMSILHHVDYESVDGEQNERDVYLRQAAW 760

Query: 638 ---------EDESSWN--------------NLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                    ED S+ +                +V+  T+ G  +R    ++    R G+ 
Sbjct: 761 IRRGSGEGDEDASAPDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQG 820

Query: 675 AMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              +D   +   +++    T  + I+L T  GQ +R P+  IRV A R + GV    + +
Sbjct: 821 IASMDVTAKNGPVVTAFPVTPTDQIMLVTDGGQIIRCPVDDIRV-AARKTQGVVLFRVGE 879

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            ++V+S+++V     + D+    +   +       G TE     +   + E
Sbjct: 880 DEKVVSVSLV---GENGDDDNVEVADEATDAATGDGPTEAGPDEEQGDATE 927


>gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48]
 gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48]
          Length = 918

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/914 (56%), Positives = 674/914 (73%), Gaps = 8/914 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   +S      GI+ V+I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M
Sbjct: 1   MTD-TPASGLPTPHGISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +KKYVK A I G+VMG+YHPHG+ AIYDAL RMAQ +S+RLLL++GQGNFGSV
Sbjct: 60  YEEGRTHDKKYVKSANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +AA  L+ D+ K+TVDF  NYDG+ QEP VL +R PN+LVNG G
Sbjct: 120 DGDPPAAMRYTESRMTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE+++ C+A++D+P++  + L+ I+ GPDFPTG  ILGR+G + A
Sbjct: 180 GIAVGMATNIPPHNLGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEILGRSGARQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGS+++RG + +E    DRE I+VTE+PYQVNKA ++E IAE+VREKRI  I+D+R
Sbjct: 240 LLTGRGSVIMRGKASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+VIELKR AS DVILNQLYRY++LQ+ F VNM+ALN  +P++  L  +L+ 
Sbjct: 300 DESDRQGMRMVIELKRDASGDVILNQLYRYSALQTSFGVNMLALNHGRPQQMGLRKLLEI 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVVVRRT++ LNKARDR HVLVGLAIAVAN+DE++ IIR S +P  AR  L  +
Sbjct: 360 FLDFREEVVVRRTRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAK 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W A D+  LI+LI D    +   G + L+E Q RAIL L L+RLTGLGRD+I  E  +L
Sbjct: 420 NWPAGDMSPLIELIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTL 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L ILSSR R+LGI+++EL  VK     PRR+ IV+G  D+EDED I REDMVV
Sbjct: 480 AASIAEYLAILSSRERILGIVREELEEVKALYAEPRRSLIVDGEADIEDEDLIPREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GYVKR PLS YR Q RGGKGRSG+ M+DED +T ++  STH  +LFFSS G  YK
Sbjct: 540 TVTHSGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP+G+PQ++GKA +N+L L++ E +T I+  PEDE++W+ L +VFAT+ G+VRRN
Sbjct: 600 LKVWRLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+ +NR+GKIAMKL+  D I+ V  CT++ D+LL+T  G+ +RF +  +RVF GR+
Sbjct: 660 KLSDFVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEVRVFKGRD 719

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLK 776
           S GVRG+ L + D VISMAI+   +A   ER  Y+KH ++ R  ++G     T  +    
Sbjct: 720 STGVRGVRLGEDDTVISMAILRRVEATPAERAAYLKHAASLRAAVTGEGEEATVVVEEEA 779

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + + + ++S ER  EL   E+FILT+++ GFGKRTSSYD+R + R G+GI A D+SK  
Sbjct: 780 EEGAEDASLSVERIAELGAAEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKRG 839

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV D DQ++LV+D G LIR PV++IR+A R T+GV IF T+  E+VVSVER
Sbjct: 840 --GKLVASFPVEDTDQLLLVTDGGQLIRTPVSQIRVAGRNTQGVTIFRTS-GEKVVSVER 896

Query: 897 IRESEIVDEAESTE 910
           + E+   D  +  E
Sbjct: 897 LAETAEEDGPDEAE 910


>gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
          Length = 924

 Score =  893 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/917 (55%), Positives = 663/917 (72%), Gaps = 12/917 (1%)

Query: 2   TEHIIS---SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           TE+I        + E+GI  +SIT+EMQ SYL YA++VI+ RAIPD RDGLKPVHRRIL+
Sbjct: 9   TENIPPQGAGSGDGEEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILW 68

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K++ K A + G+V+GKYHPHG+ A+YDAL RMAQ +S+RL L++GQGNFG
Sbjct: 69  SMQEQGYTHDKRHRKSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFG 128

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+D DPPAA RYTE R+   A  LL D+ KDTVDF   YDG  QEP VL AR+PN+LVNG
Sbjct: 129 SIDNDPPAAMRYTEVRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNG 188

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGE++D  V +ID P +  + L+ I+ GPDFPTGA I+G++G +
Sbjct: 189 AGGIAVGMATNIPPHNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIMGQSGAR 248

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            A  TGRGS+V+R  + +E+   DR  I+V++IP+QVNKAAM+E+IA LVREK++  IAD
Sbjct: 249 QALLTGRGSVVMRATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIAD 308

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G RVVIELKR A+A+V+LN LY+ + LQ+ F+ N++ALN  +PE+ TL  +L
Sbjct: 309 LRDESDRHGIRVVIELKRDANAEVVLNNLYKQSPLQTSFAYNLLALNRGRPEQMTLRTVL 368

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K+FV FREEVV RRTK+LL KARDRAHVLVGLAI+VAN+DEVVR+IR +PNP  AR  LM
Sbjct: 369 KSFVDFREEVVTRRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALM 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R+W A D+  L+ L+ D  +++  DG++ LSE Q RAIL+LRL RLT LGRD+I +EL 
Sbjct: 429 GRNWPAKDLASLVALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQ 488

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           SL  +I + L IL  R R+L IIK EL  V++   TPR+T+ ++  ++MEDED I REDM
Sbjct: 489 SLADKIADYLQILRDRDRVLTIIKDELADVRERFATPRKTQFID-AIEMEDEDLIAREDM 547

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKR  L  YRAQRRGGKGRSG+ M+D+DF++ LF+ +THT +LFF+  G  
Sbjct: 548 VVTVSHAGYVKRTSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMA 607

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YK K+WRLP G P +RGKA IN+L L+QGER+T I+P P+DE+ W ++ +VFAT+ GNVR
Sbjct: 608 YKLKLWRLPEGGPTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVR 667

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF  +N++GKIAMKLD  D ++ V    +  DILLTT+ G  +RFP+ A+RVF+G
Sbjct: 668 RNKLSDFTNVNKAGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSG 727

Query: 719 RNSVGVRGISLAKGDQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R S GVRGI     D+     V+SMAI+ H D   +E   Y+KH +A RR  +G+ E   
Sbjct: 728 RTSTGVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRRA-AGEGETEG 786

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S       E  +S ER   ++  EQFILT +E G+GKRTSS+++R S R G+GI     S
Sbjct: 787 SDAEAEGSEAALSTERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTS 846

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G +VA FPV D D+I+LV+D G LIR  V +IR+A R T+GV I +T + ERVVS
Sbjct: 847 ARN--GRVVASFPVEDADEIMLVTDGGQLIRTGVADIRVAGRNTQGVKILTTRETERVVS 904

Query: 894 VERIRESEIVDEAESTE 910
           VE + E++  D+    E
Sbjct: 905 VEHVPEAQNDDDLPDDE 921


>gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
 gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
          Length = 932

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 520/916 (56%), Positives = 669/916 (73%), Gaps = 8/916 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   +  ++   G+  ++I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MTDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   ++ YVK AR+ G+VMGKYHPHG+ AIYD + RMAQ +S+ LLLI+GQGNFGSV
Sbjct: 61  NEQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE R+ +AA  +L DL KDTVDF+ NYDGS QEPVVL +R PN+LVNG G
Sbjct: 121 DNDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD C+A IDNP+I LD L++I+ GPDFPTG  I+GR+G + A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEIIGRSGARQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGS+++RG + IE+   +RE IV+T IPYQVNKAA++E+IAELVREKRI  +ADLR
Sbjct: 241 LMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+E+KR ASA+VILNQLYRYT LQS F VNM+ALN  +PE+  L  ++ A
Sbjct: 301 DESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGRPEQMGLREMVTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVVVRRTK+ L+KARDR HVLVGLAIAVAN+DE + IIR S +P  AR  L+ +
Sbjct: 361 FVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  L++LI D    +     + L++ Q RAIL L L+RLTGLGRD+I  E   L
Sbjct: 421 DWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEAREL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+  L+IL+SR R++ I+++EL+ V+++   PRRT IVEG  D+EDED I RE+MV+
Sbjct: 481 AGVIRGHLEILASRERVMAIVREELVQVREQFAVPRRTEIVEGDADVEDEDLIAREEMVI 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GYVKR PL+ YR Q RGGKGRSG+  ++ED VT +F  +THT +LFFSS G  YK
Sbjct: 541 TVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP+G+P +RGKA +N+L +  GE IT+I+P PEDE++W+   V+FAT+ GNVRRN
Sbjct: 601 LKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFATRSGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+ I R+GKIAMKLD  D I+ V  C   +ND+LLTT LG+C+RF    +RVFAGR
Sbjct: 661 KLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFATEEVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-----RLISGDTEEITS 774
           +S GVRGI LA+GD VISMAI+  A A   ER  Y+KH  A R          +T     
Sbjct: 721 DSTGVRGIRLAEGDSVISMAILRSAPATPAERAAYLKHAKAMRIATGEAEEGEETAAPEE 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  E  +  ER  E+   E+ ILTVS +G+GKRTS+Y+FR + R G+G+ A D++K
Sbjct: 781 EDEANGEEAALGPERLAEMGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTK 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G L   FPV++ D+I+LVSD+G LIR+PV ++R+A R T+GV+IF  + DE VVSV
Sbjct: 841 RG--GKLAGSFPVDEGDEILLVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSV 898

Query: 895 ERIRESEIVDEAESTE 910
           ER+ E    DE E  +
Sbjct: 899 ERLAEPAGDDEVEDGD 914


>gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 926

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/916 (56%), Positives = 677/916 (73%), Gaps = 16/916 (1%)

Query: 1   MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           M++     DE E           + GI  +SI  E+++SYL YA++VI+ RA+PD+RDGL
Sbjct: 1   MSDPTTPPDEPETPENGAGKPPPQDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRILF M + G   +K Y K ARI G+V+GKYHPHG++A+YDAL RMAQ +S+ + 
Sbjct: 61  KPVHRRILFAMNEGGNTPDKPYSKSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGS+D DPPAA RYTE R+ K    LL DL KDTVDF+ NYDG  +EPVVL A
Sbjct: 121 LVDGQGNFGSIDNDPPAAMRYTESRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPA 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           ++PN+LVNGGGGIAVGMATNIP HNLGE++D  +A+I++P I  +AL EI+ GPDFPTGA
Sbjct: 181 QFPNLLVNGGGGIAVGMATNIPPHNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +I+G++G + A  TGRGS+++R  + IE+    RE I+V+EIPYQVNKAAM+ KIAELVR
Sbjct: 241 LIMGQSGSRKALMTGRGSVIMRSKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVR 300

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           EK+I  I+DLRDESDR G RVVIELKR ASADV+LNQLYR++ LQS F+VNM+ALNG +P
Sbjct: 301 EKKIEGISDLRDESDRNGIRVVIELKRDASADVVLNQLYRFSQLQSSFAVNMLALNGGRP 360

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           E   L  +L+ F+ FREEV+VRRTK+ L KARDRAHVLVGLA+AVAN+DEV+R+IR SP+
Sbjct: 361 ELMNLRKVLEYFITFREEVIVRRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPD 420

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
           P TAR+ L+ ++W   D+  LIDLI D     G  +GT+YLS+ Q R+IL L L RLTGL
Sbjct: 421 PATARQRLLDKAWPQQDMGPLIDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
           GRD+I NE   L  +I E L+IL SR R+LGIIK EL  VK++   PRR++ V+G +DME
Sbjct: 481 GRDEIGNEAKGLADKIAEYLEILRSRPRILGIIKAELAEVKEKFAVPRRSQFVDGGVDME 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I  EDMVVTV+H GYVKR PLS YR Q RGGKGRSG+ M+DEDF+  +F  +THT 
Sbjct: 541 DEDLIEVEDMVVTVTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTE 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFFSS G VYKEKVWRLPIG P +RGKAL+NI  L   ERI ++MP P+ E +  +L V
Sbjct: 601 ILFFSSAGMVYKEKVWRLPIGGPTSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDV 660

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +FAT+ GNVRRN+L+DF ++NR+GKIAMKLD  D I+SV+ C++++D+LLTT LGQ +RF
Sbjct: 661 MFATRSGNVRRNRLADFTRVNRAGKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRF 720

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ +RVFAGR+S GVRGI L   D VISM I+ H     +E   Y+KH +A RR ++G+
Sbjct: 721 AVTDVRVFAGRDSTGVRGIRLGAEDTVISMGILRHMGVTSEEARAYLKHAAAMRRAVTGE 780

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            EEI+  +++   E  +S ER  EL   E+FI TV++ G GKR+S+YD+R++ R GKG+ 
Sbjct: 781 EEEISDDEDEVVAEAALSAERIAELGAAEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLV 840

Query: 829 ATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A ++   ++ G     +   FPV D D+++LV+D G LIR PV++IRIA R+T GV +  
Sbjct: 841 AQNIWGRDKKGGPVKKVAQSFPVGDGDEVMLVTDGGQLIRTPVDQIRIAGRSTGGVWVLR 900

Query: 885 TAKDERVVSVERIRES 900
           T   ERVVS  R+ + 
Sbjct: 901 TGDGERVVSAARLVDD 916



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 19/247 (7%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             RS  +   +D  DE    +    E+ ++  T  G   R P+S  R    R   G  G+
Sbjct: 527 PRRSQFVDGGVDMEDE----DLIEVEDMVVTVTHGGYVKRTPLSTYRT-QNRGGKGRSGM 581

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN------DSS 780
           S+   D ++   +   H +  +      +      R  I G T    +L N      D  
Sbjct: 582 SMKDEDFIVRVFSATTHTEILFFSSAGMVYKEKVWRLPIGGPTSRGKALVNIFPLAADER 641

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E  +     +E   +   ++  +  G  +R    DF   NR+GK   A  + + +    
Sbjct: 642 IESVMPLPDSEE-AAEHLDVMFATRSGNVRRNRLADFTRVNRAGK--IAMKLDEGD---G 695

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE 899
           +V+V   ++ D ++L +  G  IR  V ++R+ A R + GV       ++ V+S+  +R 
Sbjct: 696 IVSVQLCSEKDDVLLTTALGQAIRFAVTDVRVFAGRDSTGVRGIRLGAEDTVISMGILRH 755

Query: 900 SEIVDEA 906
             +  E 
Sbjct: 756 MGVTSEE 762



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 101/293 (34%), Gaps = 61/293 (20%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R    +E ++ + D +       V+  +  G V+R  L+ +    R GK    + + 
Sbjct: 638 ADER----IESVMPLPDSEEAAEHLDVMFATRSGNVRRNRLADFTRVNRAGK--IAMKLD 691

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGK--------------A 617
           + D +  + + S    VL  ++LG   +  V  + +     + G                
Sbjct: 692 EGDGIVSVQLCSEKDDVLLTTALGQAIRFAVTDVRVFAGRDSTGVRGIRLGAEDTVISMG 751

Query: 618 LINILSLNQGE---------------------------RITTIMPFPED---ESSWNNLY 647
           ++  + +   E                            +        +   E      +
Sbjct: 752 ILRHMGVTSEEARAYLKHAAAMRRAVTGEEEEISDDEDEVVAEAALSAERIAELGAAEEF 811

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE-------ILSVETCTQENDILL 698
           +      G  +R+   D+    R GK  +A  +  RD+       +         ++++L
Sbjct: 812 IFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDKKGGPVKKVAQSFPVGDGDEVML 871

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            T  GQ +R P+  IR+ AGR++ GV  +    G++V+S A ++       ++
Sbjct: 872 VTDGGQLIRTPVDQIRI-AGRSTGGVWVLRTGDGERVVSAARLVDDGEGGMDK 923


>gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 898

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/884 (57%), Positives = 664/884 (75%), Gaps = 30/884 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  +NK + K 
Sbjct: 11  DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGDPPAA RYTE R
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K+AH LL+D+ K+TVDF+ NYD S  EP+VL ARYPN+LVNG GGIAVGMATNIP HN
Sbjct: 131 LAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D C A ID+P++ ++ LME++ GPDFPTG  ILGR GI+ A  TGRGS+V+RG  
Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRV 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE+   DRE I+VTEIPYQVNKA MLE+IAELVR+K+I  I+DLRDESDR G RVVIE+
Sbjct: 251 HIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRVVIEI 310

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+V+L QLYR+T LQ+ F VN +ALNG +PE  TL  I+ AF+AFREEV+ RRT 
Sbjct: 311 KRDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTI 370

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P  AR  LM R+W   D++ LI LI
Sbjct: 371 FELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWPVGDVEPLIQLI 430

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D+    I  DG   LSE+Q +AIL+LRL RLTGL RD I +EL  +G +I+  L ILSSR
Sbjct: 431 DEPGRAI-EDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSR 489

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            RL  +++ EL+ ++++  TPRRT I E   + + ED I REDMVVTV++ GY+KRVPLS
Sbjct: 490 PRLFEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVTNTGYIKRVPLS 549

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGGKGRSG+ ++DEDF++ +F+V+THT VLFFSS G  YK KV+RLP+G+PQAR
Sbjct: 550 AYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQAR 609

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L L++GE I+TIMP PEDE+SW +L+V+F T  G+VRRN LSDF ++  +GKI
Sbjct: 610 GKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKI 669

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL   + ++SV+TC  E +D+LL T LG+ +RFP+  +R F  R+S GVRGI L   D
Sbjct: 670 AMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDSTGVRGIRLDGED 729

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VISM+I+ H D D + R  ++K                          G++  E+ +++
Sbjct: 730 EVISMSILRHTDYDSETRDAFLK--------------------------GDLPAEQMEKM 763

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             ++QF+LTV+E GFGKRTS++++RI+ R G GI   D++   + G +VA FPVN  D I
Sbjct: 764 GAEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGTVVASFPVNHEDDI 821

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +LVSD G LIR+PV++IRIA R T+GV +  TA++ERVVS  R+
Sbjct: 822 MLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARL 865



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 105/259 (40%), Gaps = 36/259 (13%)

Query: 521 VEGLLDMEDEDCIVREDM------VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           ++    +     +  ++       V+ V+  G V+R PLS +   R    G+  + + + 
Sbjct: 619 LDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLSDFTEVR--ANGKIAMKLGEG 676

Query: 575 DFVTDLFIVST-HTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERIT- 631
           + +  +   +     VL  + LG   +  V  +    S  + G  +  I    + E I+ 
Sbjct: 677 ERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDSTG--VRGIRLDGEDEVISM 734

Query: 632 TIMPFPEDESSWNN-------------------LYVVFATKHGNVRRNKLSDFIQINRSG 672
           +I+   + +S   +                    +V+  T++G  +R    ++    R G
Sbjct: 735 SILRHTDYDSETRDAFLKGDLPAEQMEKMGAEQQFVLTVTENGFGKRTSAFEYRITGRGG 794

Query: 673 KIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                LD   +   +++      E+DI+L +  G+ +R P+  IR+ AGR + GV  +  
Sbjct: 795 SGIANLDMTAKTGTVVASFPVNHEDDIMLVSDGGKLIRMPVDDIRI-AGRKTQGVTLLRT 853

Query: 730 AKGDQVISMAIVLHADADY 748
           A+ ++V+S A +    ++ 
Sbjct: 854 AENERVVSAARLCDIGSNG 872


>gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100]
 gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 941

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/919 (56%), Positives = 668/919 (72%), Gaps = 24/919 (2%)

Query: 1   MTEHII-SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +    +  +     I  + ITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MADPSDGNKGDRGAGDIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G  WNK Y K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+R+ LI+GQGNFGS
Sbjct: 61  MSENGYSWNKPYRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE RLQK +  LL+DL  DTVDF+ NYD S +EP VL AR+PN+LVNG 
Sbjct: 121 VDGDPPAAMRYTEVRLQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A ++NP + ++ LME I GPDFPTG VI+GR GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIMGRAGIRA 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGS+V+RG  H+E    DR+ ++VTEIPYQVNKA + E+IAELVREKR+  I+D+
Sbjct: 241 AYLKGRGSVVVRGKVHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDV 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVVIELKR A  DV+LNQLYR+TSLQS+F+ NMVALN  +PE+ TL+  ++
Sbjct: 301 RDESDRSGYRVVIELKRDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLDFIQ 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF  FRE V+ RRTK+LL KARDRAHVLVGLA AVAN+DEV+++IR +P+P +AR  LM 
Sbjct: 361 AFTQFRETVITRRTKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A DI  L+ LI+D    I       LS  Q +AILELRL RLT LGRD+I +EL +
Sbjct: 421 RDWPADDIAPLLLLIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKA 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++ L+ILSSR+R++ I++ EL ++K+E  TPRRT I++   +++DED I +EDMV
Sbjct: 481 LADKIRDYLNILSSRARVISIVRDELTAIKEEFATPRRTEILDVEGEVDDEDLIQKEDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLF SS G  Y
Sbjct: 541 VTVSHRGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+ +PQARGKALIN+L L Q E IT+I+P PE E   + ++++FAT+ GNVRR
Sbjct: 601 KMKVWRLPLSAPQARGKALINLLPLQQDETITSILPLPE-ERDESGVFILFATRSGNVRR 659

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N+L+DF ++ ++GKIAMKLD  D+I   + C + +DILLTT  GQ +RFP++ +R+F GR
Sbjct: 660 NELADFAEVRQNGKIAMKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPVTDVRIFKGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-- 777
            S GVRG+ L + D VIS+AI+ H +A   ER  Y+K  +A RR  +G+           
Sbjct: 720 ESTGVRGVRLDEDDTVISLAILRHMNATPAERAAYLKQANAMRRAAAGERAATEGDIVEQ 779

Query: 778 ------------------DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                             +S+   +++  R  E+   EQ++LT+SE+GFGKRTSSY++R 
Sbjct: 780 EAAAAAEAVEALDDGEAIESTDIADLTPARYGEMGAAEQYVLTMSERGFGKRTSSYEYRT 839

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           S R GKGI A  V++ N  G L+A FPV D DQI+LV++ G LIR P+  I I  R+ +G
Sbjct: 840 SGRGGKGIIAMAVNERN--GRLIASFPVEDTDQIMLVTNGGKLIRCPIEGISITGRSAQG 897

Query: 880 VVIFSTAKDERVVSVERIR 898
           V IF T +DERVVS E I 
Sbjct: 898 VTIFRTDQDERVVSAELIS 916


>gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756]
 gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756]
          Length = 918

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/915 (54%), Positives = 658/915 (71%), Gaps = 8/915 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            EH     +     I  ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M 
Sbjct: 3   DEHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMH 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G    + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGSVD
Sbjct: 63  EQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGSVD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTECR+   A  LL DL KDTVDF  NYDG  QEP VL AR PN+LVNG GG
Sbjct: 123 GDMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGAGG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D C+ +ID P+I  D L++++ GPDFPTG  I+GR G + A 
Sbjct: 183 IAVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEIIGRAGPRQAL 242

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+++RGV+ +E     RE I+VTEIPYQVNKA ++E IAELVR+K++  IAD+RD
Sbjct: 243 LTGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADIRD 302

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES+R G R+VIELKR AS +VILNQLYR+T+LQS F VNM+ALN  +PE+  L  +L+ F
Sbjct: 303 ESNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHKLLQLF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ +S
Sbjct: 363 VEFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKS 422

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  L++LI D        G + L++ Q RAIL L L+RLTGLGR++I NE  +L 
Sbjct: 423 WPAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAETLA 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+  L++LS R+ ++ ++++EL+ V+++   PRR +IV+G  DMEDED IVREDMV+T
Sbjct: 483 DAIRGYLELLSDRANIMAVVREELVEVREKFAVPRRCQIVDGDADMEDEDLIVREDMVIT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  GYVKR PL+ YR Q RGGKG+SG+  ++ED VT +F  STH  +LFF+S G VYK 
Sbjct: 543 VTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKM 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+G   +RGKA +N+L +  GE IT+I+  PEDE++W+ L V+FAT+ G+VRRNK
Sbjct: 603 KVWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRRNK 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + R+GKIAMKLD  D I+ V  C  + D+LLTT  G+C+RF +  +RVFA R+S
Sbjct: 663 LSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDS 722

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI---TSLKND 778
            GVRG+ LA+GD+VISMA++   DA   ER  Y+KH  A  R    + ++         +
Sbjct: 723 TGVRGVRLAEGDEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEGDDAPVAAEEGEE 782

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            + E  +S ER  EL   E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK    
Sbjct: 783 DADETTLSPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRG-- 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LV  FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER+ 
Sbjct: 841 GRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLA 900

Query: 899 ESEIVD---EAESTE 910
           +S   D   E    E
Sbjct: 901 DSGGDDNQGEDSGAE 915


>gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
 gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
          Length = 919

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/907 (55%), Positives = 656/907 (72%), Gaps = 6/907 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H     +     I  ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M 
Sbjct: 3   DDHNTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMH 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G    + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGSVD
Sbjct: 63  EQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTECR+   A  LL DL KDTVDF  NYDG  QEP VL +R PN+LVNG GG
Sbjct: 123 GDMPAAMRYTECRMAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGAGG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D C+ +ID PD+  D L++++ GPDFPTG  I+GR G + A 
Sbjct: 183 IAVGMATNIPPHNLGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEIIGRAGPRQAL 242

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+++RGV+ +E+    RE I+VTEIPYQVNKA ++E IAELVR+K+I  +AD+RD
Sbjct: 243 LTGRGSVIMRGVASVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADIRD 302

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES+R G R+V+ELKR AS +VILNQLYR+T+LQS F VNM+ALN  +PE+  L  +++ F
Sbjct: 303 ESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHQLIQLF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ +S
Sbjct: 363 VDFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKS 422

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  L++LI D        G + L++ Q RAIL L L+RLTGLGRD+I NE  +L 
Sbjct: 423 WPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAAALA 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+  L++LS R+ ++ ++++EL+ V+++   PRR +IV+G  DMEDED IVREDMV+T
Sbjct: 483 DAIRGYLELLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVREDMVIT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  GYVKR PL+ YR Q RGGKG+SG+  ++ED VT +F  STH  +LFF+S G VYK 
Sbjct: 543 VTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKM 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+G   +RGKA +N+L +  GE IT+I+  PEDE++W  L V+FAT+ G+VRRNK
Sbjct: 603 KVWRLPLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNK 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + R+GKIAMKLD  D I+ V  C  + D+LLTT  G+C+RF +  +RVFA R+S
Sbjct: 663 LSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDS 722

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS- 780
            GVRG+ L  GDQVISMA++   DA   ER  Y+KH  A  R   G+  E T+   D   
Sbjct: 723 TGVRGVKLLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADDGD 782

Query: 781 ---VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               E +++ ER  EL   E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK   
Sbjct: 783 EEVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRG- 841

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV  FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER+
Sbjct: 842 -GRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERL 900

Query: 898 RESEIVD 904
            +S   D
Sbjct: 901 ADSGGDD 907



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 99/289 (34%), Gaps = 60/289 (20%)

Query: 519 RIVEGLLDMEDEDCIVREDM-----VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            I  G            E       V+  +  G V+R  LS +   RR GK    + + +
Sbjct: 624 PIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNKLSDFVDVRRNGK--IAMKLDE 681

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLN------- 625
            D +  + + +    VL  ++ G   +  V  + +  S  + G   + +L  +       
Sbjct: 682 GDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGVRGVKLLDGDQVISMAV 741

Query: 626 ----------------------------QGERITTIMPFPEDESSWNNLY---------- 647
                                       +GE   T     ++E    +L           
Sbjct: 742 LRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADDGDEEVGEASLTPERIAELGAA 801

Query: 648 ---VVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTK 701
              ++  +  G  +R    DF +  R G    A  L      ++      + + ILL T 
Sbjct: 802 EEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRGGRLVGSFPIDESDQILLVTD 861

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            GQ +R P+S IRV A RN+ GV     A+ + V+S+  +  +  D ++
Sbjct: 862 QGQLIRVPVSQIRV-AARNTQGVTIFRTAQDEHVVSVERLADSGGDDNQ 909


>gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31]
 gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31]
          Length = 922

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/911 (54%), Positives = 654/911 (71%), Gaps = 9/911 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +       +T ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M + G  
Sbjct: 12  PASPASRGDVTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQT 71

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGSVDGD PA
Sbjct: 72  PERSYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPA 131

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECR+   A  LL DL KDTVDF+ NYDG  QEPVVL +R PN+LVNG GGIAVGM
Sbjct: 132 AMRYTECRMAPPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLLVNGAGGIAVGM 191

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGE+VD C+ +ID PD+  D L++++ GPDFPTG  I+GR G + A  TGRG
Sbjct: 192 ATNIPPHNLGEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEIIGRAGPRQALLTGRG 251

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+++RG++ +E+    RE I++T IPYQVNK+ ++E IAE+VR+KRI  ++D+RDES+R 
Sbjct: 252 SVIMRGLATVEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEGVSDIRDESNRD 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELKR AS +VILNQLYR+T+LQS F VNM+ALN  +P +  L  ++  FV FRE
Sbjct: 312 GMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPSQMGLRELIDIFVKFRE 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ ++W A D
Sbjct: 372 EVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKAWPAGD 431

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  L++LI D        G + L++ Q RAIL L L+RLTGLGRD+I NE  SL   IK 
Sbjct: 432 MLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAASLAEAIKG 491

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LD+LS R+ ++ ++++EL+ V+++   PRR +IV+G  D+EDED IVREDMV+TV+  G
Sbjct: 492 FLDLLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADVEDEDLIVREDMVITVTLGG 551

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR PL+ YR Q RGGKG+SG+  + ED VT +F  STH  +LFF+S G VYK KVWRL
Sbjct: 552 YVKRTPLAAYRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSGGKVYKMKVWRL 611

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G   +RGKA +N+L +  GE IT+I+  PEDE++W+ L V+FAT+ G+VRRNKLSDF+
Sbjct: 612 PQGVANSRGKAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATRSGSVRRNKLSDFV 671

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + R+GKIAMKLD  D I+ V  C    DILL T  G+C+RF    +RVFA R+S GVRG
Sbjct: 672 DVRRNGKIAMKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEVRVFASRDSTGVRG 731

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV---EG 783
           + LA GD VISM+++ + DA   ER  Y+KH  A  R +  + +E  +   DS     E 
Sbjct: 732 VRLAPGDSVISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAPAAVEDSEEDVGEA 791

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +++ ER  EL   E+ +LTVS +GFGKRTS+YD+R + R G+G+ A D+SK    G LV 
Sbjct: 792 SLTPERIAELGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDLSKRG--GKLVG 849

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            FPV+++DQI+LV+D G LIRVPV++IR+A+R T+GV IF TA DE VVSVER+ E+   
Sbjct: 850 SFPVDESDQILLVTDAGQLIRVPVSQIRVAARNTQGVTIFRTAADEHVVSVERLAETGGD 909

Query: 904 ----DEAESTE 910
               DE E+ E
Sbjct: 910 DSTGDENEADE 920


>gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 895

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/899 (56%), Positives = 670/899 (74%), Gaps = 32/899 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  +NK + K 
Sbjct: 11  DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGDPPAA RYTE R
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L ++AH LL+D+ K+TVDF+ NYD S  EP+VL ARYPN+LVNG GGIAVGMATNIP HN
Sbjct: 131 LARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D C A ID+P++ ++ LME++ GPDFPTG  ILGR GI+ A  TGRGS+V+RG  
Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRV 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE+   DRE IVVTEIPYQVNKA MLE+IAELVR+K+I  I+DLRDESDR G R+V+E+
Sbjct: 251 HIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVEI 310

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A A+V+L QLYR+T LQ+ F VN +ALNG +PE  TL  I+ AF+AFREEV+ RRT 
Sbjct: 311 KRDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTI 370

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P  AR +LM R+W   D++ LI LI
Sbjct: 371 FELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLIRLI 430

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D+    I  DG   LSEVQ +AIL+LRL RLTGL RD I +EL  +G +I+  L ILSSR
Sbjct: 431 DEPGRAI-EDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSR 489

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            RL+ +++ EL+ ++++  TPRRT I E   + + ED I REDMVVTV++ GY+KRVPLS
Sbjct: 490 PRLMEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVTNTGYIKRVPLS 549

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGGKGRSG+ ++DEDF+T +F+V+THT VLFFSS G  YK KV+RLP+G+PQAR
Sbjct: 550 AYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQAR 609

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L L+ GE I+TIMP PEDE++W +L+V+F T  G+VRRN LSDF ++  +GKI
Sbjct: 610 GKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKI 669

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL   + ++SV+TC+ E +D+LL T  G+ +RFP+  +R F  R+S GVRGI L   D
Sbjct: 670 AMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDSTGVRGIRLDGED 729

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VISM+I+ H D D + R  ++K                          G++  ++  ++
Sbjct: 730 EVISMSILRHTDYDSETRDAFLK--------------------------GDLPADQMDKM 763

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             ++QFILTV+E GFGKRTS++++RI+ R G GI   D++   + G +VA FPVN  D I
Sbjct: 764 VAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGLVVASFPVNHEDDI 821

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAESTE 910
           +LVSD G LIR+PV++IRIA R T+GV +  TA++ERVVS  R+ +  S   +  E+ E
Sbjct: 822 MLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARLCDIGSNGDEPDETDE 880



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 105/257 (40%), Gaps = 30/257 (11%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST-HTSVLFFSSLGF 597
           V+ V+  G V+R PLS +   R    G+  + + + + +  +   S     VL  +  G 
Sbjct: 643 VMFVTSKGDVRRNPLSDFTEVR--ANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGK 700

Query: 598 VYKEKVWRLPI-GSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNN---------- 645
             +  V  +    S  + G  +  I    + E I+ +I+   + +S   +          
Sbjct: 701 AIRFPVQDVREFKSRDSTG--VRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPAD 758

Query: 646 ---------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQE 693
                     +++  T++G  +R    ++    R G     LD   +   +++      E
Sbjct: 759 QMDKMVAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHE 818

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +DI+L +  G+ +R P+  IR+ AGR + GV  +  A+ ++V+S A +    ++ DE   
Sbjct: 819 DDIMLVSDGGKLIRMPVDDIRI-AGRKTQGVTLLRTAENERVVSAARLCDIGSNGDEPDE 877

Query: 754 YMKHMSAQRRLISGDTE 770
             +        ++G  +
Sbjct: 878 TDEGAGDAAEDMAGGED 894


>gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12]
 gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 913

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/913 (53%), Positives = 638/913 (69%), Gaps = 12/913 (1%)

Query: 1   MTEHIISSDEEEE------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+     +  +E      +   ++SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHR
Sbjct: 1   MTDTPEPPENTDETPPGGGRIQETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G    K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQ
Sbjct: 61  RILYAMHETGNTHEKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD PAA RYTE R+ K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+
Sbjct: 121 GNFGSMDGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNM 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           LVNG GGIAVGMATNIP HNLGEV+D  +A+I+ PD++++ LM+ I  PDFPTG  ILGR
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQILGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            G + AY  GRGS++IR  + IE+   DR  IV+ EIPYQVNK++M+EKIAELVREKRI 
Sbjct: 241 GGARKAYLEGRGSVIIRAKTRIEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IA ++DESDR G RVVIELKR A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL
Sbjct: 301 GIAHVQDESDRVGVRVVIELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L +F++FREEVV RRT Y L KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR
Sbjct: 361 KDFLSSFISFREEVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +LM R W A+DI D I LIDD ++T+  DGT  LSE Q RAIL+LRL RLT +G  ++ 
Sbjct: 421 EKLMTRRWPAADIADYIRLIDDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVT 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +EL  L  +I+E LDIL SRSR++ II  EL  VKD+   PRRT I +   DMEDED I 
Sbjct: 481 DELQELAAKIQEYLDILRSRSRIMAIISDELREVKDQFAVPRRTEITDWSGDMEDEDLIE 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           REDMVVTV+  GY+KR PL  +RAQRRGGKG +G+  +++D VT LF+ +THT +L F++
Sbjct: 541 REDMVVTVTSGGYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTT 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VYK K WRLP G   ARGKAL+N+L ++ G  I  IMP    E  W +L +VFAT  
Sbjct: 601 DGMVYKLKTWRLPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSA 660

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+VRRN LSDF  + R+GKIAMKL     ++    C++E+D++L T LG+ +RF  + +R
Sbjct: 661 GDVRRNALSDFTNVMRNGKIAMKLPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           VF GR+S GVRG+ LA+GD+V+SMA++ H  AD  ER  Y+K     RR ++G +EE  S
Sbjct: 721 VFKGRDSTGVRGVRLAEGDRVVSMAVIRHFVADPQERAAYLK----MRRAVAGLSEEAES 776

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              D+   G +S ER  E+   E  ILT++E G GK +SS+D+ +  R G+G+ A D  K
Sbjct: 777 EDEDTVEAGQLSPERYAEMSAAEDLILTITEGGTGKISSSHDYPVRGRGGQGVTAMD--K 834

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LVA FPV  +DQI+L +  G  IR PV+ I   SRA  GV +F+TA  E+VVSV
Sbjct: 835 AMRGGPLVACFPVEIDDQIMLATSTGQSIRCPVDGISFRSRAAGGVKVFNTAPGEQVVSV 894

Query: 895 ERIRESEIVDEAE 907
             I +    D  +
Sbjct: 895 AYIADRGEADGDD 907


>gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814]
          Length = 981

 Score =  880 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/911 (56%), Positives = 676/911 (74%), Gaps = 16/911 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G++ ++I+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  ++K Y 
Sbjct: 40  EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ ++YDAL RMAQ++S+ L L++GQGNFGS+DGDP AA RYTE
Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+K A+ LL D+ KDTV+F+ NYDGS +EP+VL AR+PN+LVNGGGGIAVGMATNIP 
Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +A+I++P+ID +AL+EI+ GPDFPTGA+I+GR G ++   TGRGS+++R 
Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRS 279

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S IE+    RE +V TEIPYQVNKA+M+EKIAELVR+KRI  IAD+RDESDR G RVV+
Sbjct: 280 KSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVV 339

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR AS +V+LNQL+RYT LQ+ F +NM+ALN  +PE  +L  IL+AF+ FREEVV RR
Sbjct: 340 EVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARR 399

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKAR RAH+LVGLA+AVAN+DEV++IIR SP+P TAR +LM R+W A D+  LI+
Sbjct: 400 TKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLIN 459

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI D        G + LSE Q RAIL+LRL RLTGLGRD+I +E   L   I + LDILS
Sbjct: 460 LIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDILS 519

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR R++ II +EL  V++E   PRR++ +E  LDM+DE  I +EDMVV  +H GY KR  
Sbjct: 520 SRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGGYAKRTA 579

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS+YR Q RGG+GRSG+  ++ED VT  F+ +THT VLFFSS G VYK KVWR+P+G+PQ
Sbjct: 580 LSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQ 639

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGKAL+N+L L++GE IT++MP PEDE    N+ ++FAT+ G VRRNKLSDF Q+NR+G
Sbjct: 640 SRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFTQVNRNG 699

Query: 673 KIAMKLDS------RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           KIAMKLD        D I+ V+ C+ ++D++LTT LGQC+RF +  +RVF GR S GVRG
Sbjct: 700 KIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRG 759

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI------TSLKNDSS 780
           I LA GD+VISM ++ H D    E   Y+KH SA RR +  +  +           +D  
Sbjct: 760 IRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEG 819

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            E  +S ER  EL   E+F+LT++E G GKR S+YD+R++ R GKG+ A  +   N    
Sbjct: 820 DEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKL---NAGRR 876

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L A FP+ D D+I+LV+D G LIR P  +IRIA RAT+GV +  T+ +ERVVSVER+ E 
Sbjct: 877 LAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERLAEQ 936

Query: 901 E-IVDEAESTE 910
           E  VDE E+ E
Sbjct: 937 ESDVDENETEE 947



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 106/277 (38%), Gaps = 19/277 (6%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFVTDLF 581
               +  + C   +D+++T + LG   R  +   R    R   G  G+ + + D V  + 
Sbjct: 714 DDGIVGVQICSPDDDVMLT-TALGQCIRFKVEDVRVFTGRTSTGVRGIRLANGDEVISML 772

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK-------ALINILSLNQGERITTIM 634
           ++     +   S     Y +    +     +A G+        +++    +       + 
Sbjct: 773 VLR---HMDITSPEARAYLKHASAM----RRALGEEEGDTEIDVVSEPDADDEGDEAALS 825

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQ 692
           P    E      +++  T+ G  +R    D+    R GK  IA KL++   + +      
Sbjct: 826 PERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRLAAAFPIED 885

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++I+L T  GQ +R P   IR+ AGR + GV+ +  +  ++V+S+  +   ++D DE  
Sbjct: 886 GDEIMLVTDAGQLIRTPAKQIRI-AGRATQGVKVLRTSGEERVVSVERLAEQESDVDENE 944

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                  +   +            N  + + +  ++ 
Sbjct: 945 TEENVDGSAEIVDVAIDGAPEGEPNSETNDSSNDQQE 981


>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 894

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/883 (56%), Positives = 670/883 (75%), Gaps = 29/883 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T V+I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++NK + K 
Sbjct: 11  DVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYNKPFRKS 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG++AIYDA+ RMAQ +S+RL LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 71  ARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAMRYTEAR 130

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + ++AHFL++D+ KDTVDF PNYD S  EP+VL ARYPN+LVNG GGIAVGMATNIP HN
Sbjct: 131 MARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMATNIPPHN 190

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D C A+IDNPDI  + +ME++ GPDFPTG  ILGR+GI+ A  TGRGS+V+RG  
Sbjct: 191 LGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTILGRSGIRAAQLTGRGSVVMRGRC 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE+   DRE I+VTE+PYQVNKA M+E+IAELVR+K+I  ++DLRDESDR G RVVIE+
Sbjct: 251 HIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGVRVVIEI 310

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ADV+L QLY++T LQ+ F VN +ALNG +P+  TL  I+ AF+ FREEV+ RRT 
Sbjct: 311 KRDAIADVVLAQLYKFTPLQTSFGVNSLALNGGRPQMMTLREIIAAFLRFREEVITRRTI 370

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAHVLVGL+IAVAN+D+++++IR + +P  AR +LM R W A D++ LI LI
Sbjct: 371 FELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVEPLIRLI 430

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D+    I  DGT  LSEVQ +AIL+LRL RLTGL RD I +EL  +G +IKE L+ILSSR
Sbjct: 431 DEPGRGI-VDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFLEILSSR 489

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +LL +++ EL+ ++++  TPRRT I +   + + ED I REDMVVTV++ GY+KRVPLS
Sbjct: 490 PKLLEVMRNELIDMRNQFATPRRTTIEDSEFEADIEDLIAREDMVVTVTNTGYIKRVPLS 549

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGGKGRSG+ M+DEDF++ +F+ STHT VLFFSS G  YK KV+RLP+G+PQAR
Sbjct: 550 TYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVYRLPLGTPQAR 609

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++NIL L +GE I+T+MP PEDE++W +L+V FAT  G+VRRN LSDF+ I  +GKI
Sbjct: 610 GKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSDFVDIRANGKI 669

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL+  +++++V+ C+  +DILL T+LG+ +RF +  +RVF GR+S GVRGI L   DQ
Sbjct: 670 AMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTGVRGIRLDDADQ 729

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VISM+++ H + D + R  Y+++                          +++    + + 
Sbjct: 730 VISMSVLRHVEFDMETRDAYLRN--------------------------DLTGPEAERMS 763

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQ ILTV+E G+GKRTS+Y++RI+ R G+GI   D+++ N  G +VA FPV  +D+I+
Sbjct: 764 ESEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKN--GPVVASFPVGHDDEIM 821

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           LVSD GTLIR+PV++IRIA R T+GV++  TA++ERVVS  R+
Sbjct: 822 LVSDGGTLIRMPVDDIRIAGRKTQGVIVLRTAENERVVSTARL 864



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 100/258 (38%), Gaps = 31/258 (12%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G V+R  LS +   R    G+  + + D + +  +   S    +L  + LG  
Sbjct: 643 VAFATSKGDVRRNLLSDFVDIR--ANGKIAMKLNDGEQLIAVQPCSDSDDILLATRLGKA 700

Query: 599 YKEKVWRLPIGS-PQARGKALINILSLNQGERITT--IMPFPEDESSWNNLY-------- 647
            + +V  + +     + G   +  + L+  +++ +  ++   E +    + Y        
Sbjct: 701 IRFQVGDVRVFKGRDSTG---VRGIRLDDADQVISMSVLRHVEFDMETRDAYLRNDLTGP 757

Query: 648 -----------VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQE 693
                      ++  T++G  +R    ++    R G+    +D       +++      +
Sbjct: 758 EAERMSESEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKNGPVVASFPVGHD 817

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I+L +  G  +R P+  IR+ AGR + GV  +  A+ ++V+S A +   +   +E   
Sbjct: 818 DEIMLVSDGGTLIRMPVDDIRI-AGRKTQGVIVLRTAENERVVSTARLCDLNGSNEESEE 876

Query: 754 YMKHMSAQRRLISGDTEE 771
                        G  +E
Sbjct: 877 EFDEGDDTAATPPGGDDE 894


>gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131]
 gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a))
           [Rhodobacter sphaeroides KD131]
          Length = 920

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/919 (52%), Positives = 638/919 (69%), Gaps = 14/919 (1%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+      ++EE      G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRR
Sbjct: 1   MTDRPEEPGDDEEMGRPLSGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQG
Sbjct: 61  ILYAMHETGNTSDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+L
Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNML 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG GGIAVGMATNIP HNLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRS 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + AY  GRGS+++R  + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  
Sbjct: 241 GARKAYLEGRGSVIMRAKARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           IA ++DESDR G RVVIELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL 
Sbjct: 301 IAHVQDESDRVGVRVVIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L  F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR 
Sbjct: 361 DFLIHFLTFREDVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R W A+DI D I LIDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +
Sbjct: 421 RLMTRRWPAADIADYIRLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTD 480

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +I++ LDIL SR R++ II  EL  VKD    PRRT I E   D+EDED I R
Sbjct: 481 ELAELAAKIRDYLDILGSRERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIER 540

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMVVT++  GY+KR PL+ +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ 
Sbjct: 541 EDMVVTITSGGYIKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTD 600

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  K WRLP+G   A+GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G
Sbjct: 601 GMVYDLKCWRLPLGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           +VRRN+LSDF  + R+GKIAMKL     +++V  C +++D+++ T LG+ +RFP + +RV
Sbjct: 661 DVRRNRLSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRV 720

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           F+GR+S GVRGI LA GD+V+SM+++ H +AD  ER  Y+K     R +     E     
Sbjct: 721 FSGRDSTGVRGIRLASGDRVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADE 777

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + D+   G +S  R  E+   E  ILT++ +G GK +SS+D+ +  R G+G+ A + S  
Sbjct: 778 EEDAVEAGQLSPTRYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMR 837

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G LVA FPV  +DQ++L +  G  IRVPV +I   SR+  GV +F T   E VVSV 
Sbjct: 838 G--GQLVASFPVEMSDQVMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVA 895

Query: 896 RIRE----SEIVDEAESTE 910
           RI +    ++ V++AE  E
Sbjct: 896 RIADAGDTADGVEDAEPGE 914


>gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides
           2.4.1]
          Length = 907

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/901 (53%), Positives = 630/901 (69%), Gaps = 9/901 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K
Sbjct: 6   SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  
Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIE
Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT
Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I L
Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRL 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL S
Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL
Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A
Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GK
Sbjct: 606 KGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD
Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM+++ H +AD  ER  Y+K     R +     E     + D+   G +S  R  E+
Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    +E V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029]
          Length = 907

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/901 (53%), Positives = 630/901 (69%), Gaps = 9/901 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K
Sbjct: 6   SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  
Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIE
Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT
Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I L
Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRL 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL S
Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL
Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A
Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GK
Sbjct: 606 KGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD
Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM+++ H +AD  ER  Y+K     R +     E     + D+   G +S  R  E+
Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    +E V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
 gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
          Length = 936

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/904 (52%), Positives = 638/904 (70%), Gaps = 23/904 (2%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
               E   I+ +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G   
Sbjct: 24  PPPIENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVP 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y K A+I G+VMG YHPHG+++IYDALAR+AQDW++R+ LI+GQGNFGS+D DPPA+
Sbjct: 84  GRPYRKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPAS 143

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LLDDL KDTV+F PNYDGS  EP VL AR+PN+LVNG GGIAVGMA
Sbjct: 144 MRYTEARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMA 203

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+  C A +DNP I +D LM I+ GPDFPTGA+ILG++G + AY TGRGS
Sbjct: 204 TNIPPHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALILGQSGARQAYHTGRGS 263

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    +E++ GDR  IV+TEIPYQV K+ ++EKIAE  ++KRI  I+D+RDES+RQG
Sbjct: 264 IIMRSRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQG 323

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V++LKR A+ DV+LNQL+R+T  Q+ F  NM+A+ G +PE   L  I+++FV FREE
Sbjct: 324 VRIVMDLKRDATPDVVLNQLWRHTPAQTSFPANMLAIRGGRPETLNLRDIVESFVKFREE 383

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+K+ LNKAR+RAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R W   +I
Sbjct: 384 VITRRSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEI 443

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           +  I L++    TIG   T  LSEVQ RAIL+LRL RLT LGRD+I +EL  L   I E 
Sbjct: 444 ESYIKLVEAVD-TIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAEL 502

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L+IL +R RL  ++ +E  ++  E  TPRRT I     D++DED I REDMVVTV+H GY
Sbjct: 503 LEILGNRVRLYQVMVEEFDAILVEFATPRRTEIAPAGDDIDDEDLIEREDMVVTVTHGGY 562

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR PL  +RAQRRGGKGRSG+  +DED VT+LF+ STHT VLFFS+ G VY++KVWRLP
Sbjct: 563 IKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVWRLP 622

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G+PQARG+ +IN+L L  GE+ITT++P PEDE SW+ L+VVFAT HGNVRRN +  F  
Sbjct: 623 EGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDAFAN 682

Query: 668 INRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +  +GK AM+ D    D ++ V   T+++D+LL T+ G+ +RF  + +R F  R S GVR
Sbjct: 683 VPTNGKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTSTGVR 742

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+VIS++I+   DA  DER  Y++                 +   D+  +  +
Sbjct: 743 GILLKGDDEVISLSILKGFDASTDERDAYLR----------------AAPWKDNEADPTL 786

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S ER  E +  E+FILTV   G+GKR+S+Y++R + R G+GI   D  + N  G +VA F
Sbjct: 787 SAERMAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERN--GPVVASF 844

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           P ++ +Q++LV+D+  LIR+ V + R+  R + GV +F+ + +E VV   RI ES+  DE
Sbjct: 845 PAHNGEQLMLVTDQAKLIRLSVGDTRVIGRNSAGVRLFNVSDNEHVVGAARIEESD--DE 902

Query: 906 AEST 909
           AE+ 
Sbjct: 903 AEAD 906


>gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10]
 gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10]
          Length = 946

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/903 (56%), Positives = 660/903 (73%), Gaps = 7/903 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++          GI +++I DEM++SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M 
Sbjct: 19  ADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTMH 78

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G    K Y KCA   G+VMG+YHPHG+ A+YD+L R+AQDWS+R+ LI+GQGNFGSVD
Sbjct: 79  ENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSVD 138

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPAA RYTE R+QK A  LL D+ KDTV+F  NY    QEPVVL ARYPN+LVNG GG
Sbjct: 139 GDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAGG 198

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+P HNLGEV+DG +A+++NP +    L++ I GPDFPTG +ILGRTG +NA 
Sbjct: 199 IAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLILGRTGARNAV 258

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSIV+R  + IE+   DR  I+V EIPYQVNKA+M+EKIA+LVR+K+I  IADLRD
Sbjct: 259 LTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADLRD 318

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKR A+ADVILNQL+R++ +Q+ F  NM++L G +P+    + ILK F
Sbjct: 319 ESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLVGGRPQLLGALDILKEF 378

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FREEVV RR K+ LNKARDRAHV++GLA+AVAN+DEV+ +IR +PNP TAR +LM R 
Sbjct: 379 LRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLMARD 438

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  L++L+ D    +  D T+ L+E Q RAILELRL RLTGLGR+++ NE  +L 
Sbjct: 439 WPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAKTLA 498

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LD+L SR R+L II+ EL  V++   TPRR+  V+  LD EDED I R++MVVT
Sbjct: 499 DQIADLLDLLRSRQRVLDIIRDELTEVRENYATPRRSEFVDAELDFEDEDLIPRDEMVVT 558

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+H GY KR  LS YRAQRRGGKGRSG+  +DEDF+  LF+ STH  +LFFS+ G VYK 
Sbjct: 559 VTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLLFFSNRGMVYKT 618

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K WRLP+G+P  RGKALIN+L L QGE IT+IM  PEDES+W ++ V+FAT  G VRRNK
Sbjct: 619 KTWRLPLGAPNTRGKALINLLPLEQGETITSIMALPEDESTWADMNVMFATNKGTVRRNK 678

Query: 662 LSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           LSDF+Q+NR+GKIAMKL +  D+I++V  CT+++D+ LTT  G+ +RFP + +RVFAGRN
Sbjct: 679 LSDFVQVNRNGKIAMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFAGRN 738

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI---TSLKN 777
           SVGVRGI LA+GD++ISMAI+ H D    E   YMKH +A RR +  D E     T    
Sbjct: 739 SVGVRGIRLAEGDELISMAILHHIDVTSPEARAYMKHATAMRRALGDDEEIETVNTDGDE 798

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D   E  +S ER  EL   E+F+LTV+  G GKR+S+YDFR+  R   G+ ATD+     
Sbjct: 799 DGDDEAALSTERLAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIK---R 855

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              L A FPV D DQI+ V+D G LIR PV+ +RIASR+++GV +    + E VV+V RI
Sbjct: 856 DIPLSASFPVEDADQIMAVTDGGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVVRI 915

Query: 898 RES 900
           +++
Sbjct: 916 QDA 918



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 35/268 (13%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577
           ++ E    + +      +D V   +H G   R P +  R    R   G  G+ + + D +
Sbjct: 694 KLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFAGRNSVGVRGIRLAEGDEL 753

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             + I      +   S     Y +    +     +A G            E I T+    
Sbjct: 754 ISMAI---LHHIDVTSPEARAYMKHATAM----RRALG----------DDEEIETVNTDG 796

Query: 638 ED--------------ESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR 681
           ++              E      +++     G  +R+   DF  + R  +G  A  +   
Sbjct: 797 DEDGDDEAALSTERLAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIKRD 856

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             + +       + I+  T  GQ +RFP+  +R+ A R+S GVR I L +G+ V+++  +
Sbjct: 857 IPLSASFPVEDADQIMAVTDGGQLIRFPVDTVRI-ASRSSRGVRLIRLNEGENVVAVVRI 915

Query: 742 LHADADYDERICYMKHMSAQRRLISGDT 769
             A  + DE         A     +GD+
Sbjct: 916 QDAGDEGDEDGDGETVTDAGPAPEAGDS 943


>gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 943

 Score =  875 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/895 (57%), Positives = 684/895 (76%), Gaps = 6/895 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +  +  I+ VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G 
Sbjct: 3   TNTPKPIDLDISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGY 62

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           E+NK Y K ARI G+VMGKYHPHG+ +IYDA+ RM Q++++RL LI+GQGNFGS+DGD  
Sbjct: 63  EFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRA 122

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ KAAH LLDD+ K+TVDF+PNYD + +EP+VL AR+PN+LVNG GGIAVG
Sbjct: 123 AAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVG 182

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+D C A+IDNP +  + L+E++ GPDFPTG  ILGR+G++ A+ TGR
Sbjct: 183 MATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAAHLTGR 242

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+++RG +H E  SG R+ I+VTE+PYQVNKA+M+EKIAELVREK++  I+D+RDESDR
Sbjct: 243 GSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESDR 302

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIE+KR A A+V+LNQL+RYT LQ+ F VNM+ALNG KPE   L  I++AF+ FR
Sbjct: 303 RGVRVVIEVKRDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLALRPIIEAFITFR 362

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ RRT + L KAR+RAH LVGLAIAVANLD V+++IR +P+P+ AR  LM R W A 
Sbjct: 363 EEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWPAM 422

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D++ LI LID+    +  DG   LSE+Q RAIL+LRL RLTGL RD +  EL  +G +I+
Sbjct: 423 DVEPLIKLIDEPGRMV-IDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQIE 481

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL SR+RL  I++ EL+ +K+   TPRRT + E   + + ED I RE+MVVTV++ 
Sbjct: 482 EYLHILRSRARLFEIMRAELVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVVTVTNT 541

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPL+ YRAQRRGG+GR+G+ MRDEDFVT +F+V+TH  +LFFSS G VYK KV+R
Sbjct: 542 GYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYKMKVYR 601

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+G+PQARGKA++NI+ LN+GERITT+MP PEDE +W+ L V+FAT+ GNVRRN+LSDF
Sbjct: 602 LPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRNRLSDF 661

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +GKIAMKLD  D ++ V TCT E D+LLTT LG+ +RF +  +RVFAGR S GVR
Sbjct: 662 TNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVFAGRTSTGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D+V  ++I+ H +A  + R  Y+K  SA RR  SG+TE       D +  G +
Sbjct: 722 GIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALRRA-SGETEGEDDSTLD-AEPGVL 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S E  ++L+ +E+F+LTV+ +GFGKRTS+Y++R++ R G+GI   ++S+ N  G +VA F
Sbjct: 780 SAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERN--GTVVAAF 837

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRE 899
           P+ + DQ+++++D G LIR+PVN++RIA R T+GV +F      E VVSV R+ E
Sbjct: 838 PIANEDQVMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892


>gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264]
 gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 933

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/898 (54%), Positives = 646/898 (71%), Gaps = 6/898 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +SI DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KC
Sbjct: 30  DIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 89

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+LI+GQGNFGSVDGD PA+ RYTE R
Sbjct: 90  ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEAR 149

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  AA  LL D+ KDTVDF+PNYD    EPVVL AR PN+LVNG GGIAVGMATNIP HN
Sbjct: 150 MAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 209

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VD C+A++D+P++  DAL++I+ GPDFPTG  ILGRT  +NA   GRGS+V+RGV+
Sbjct: 210 LGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEILGRTAPRNALRDGRGSVVVRGVA 269

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E    DRE IVVTE+P+QVNK  ++E+IAE+VREKR+  I+D+RDESDR G R+VIEL
Sbjct: 270 SVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIEL 329

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR AS DVILNQL+RYT++QS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR K
Sbjct: 330 KRDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRKLLEVFLDFREEVVVRRVK 389

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  ++W   D+  L++LI
Sbjct: 390 FELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALVELI 449

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D    +    ++ L++ Q RAIL L L+RLTGLGRDDI  E   L   I+  L ILS R
Sbjct: 450 ADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTILSDR 509

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L II+++LL V+++   PRRT I EG  ++EDED I REDMVVTV+H GYVKRV L+
Sbjct: 510 KNILAIIREDLLDVRNQFAVPRRTLIGEGDFELEDEDLIPREDMVVTVTHGGYVKRVALN 569

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG+SG+ M+DED +T +F  STHT VLFF++ G  YK KVWRLP+G+P +R
Sbjct: 570 AYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVWRLPLGAPTSR 629

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA +N+L +  G+ I  ++P PEDE++W +  ++FAT+ G+VRRNKLSDF  +NR+GKI
Sbjct: 630 GKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSDFATVNRAGKI 689

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL+  D ++ V  CT E+D+LLTT  G+ +RF    +RVF GR+S GVRG+ L   D 
Sbjct: 690 AMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGVRGVRLQGDDA 749

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS-----VEGNISEER 789
           VISMA++   DA  DER  Y+KH +A R+      +E T ++ D        +  IS ER
Sbjct: 750 VISMAVLGRVDATPDERAAYVKHANAMRKATGESDDETTGVEADDEGAEEGGDAPISPER 809

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +        L A FPV +
Sbjct: 810 IAALGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGK-RLAAAFPVEE 868

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +D ++LV+  G +IR  V ++RI  R+++GV IF TA+ ERVVSVER+ E+   DE E
Sbjct: 869 SDDLLLVTSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEGERVVSVERLAETGGGDEPE 926


>gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 909

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/910 (52%), Positives = 630/910 (69%), Gaps = 11/910 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E       +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 11  MDE---TPPERPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 67

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 68  HETGNTHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 127

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 128 DGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAG 187

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+E I GPDFPTG V+LGR+G + A
Sbjct: 188 GIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLGRSGARKA 247

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS++IR  + +E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI  ++ ++
Sbjct: 248 YLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVSHVQ 307

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +
Sbjct: 308 DESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTS 367

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+VV RRT Y L KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 368 FIDFREDVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEAREKLMTR 427

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A++I+  + LIDD    +  DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L
Sbjct: 428 RWPAAEIESYLRLIDDPLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEDL 487

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE LDILSSR R++GII  EL  VK+    PRRT+IV+   DMEDED I REDMVV
Sbjct: 488 AAKIKEYLDILSSRERIMGIIADELREVKENFAVPRRTQIVDWSGDMEDEDLIEREDMVV 547

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK
Sbjct: 548 TVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYK 607

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP      +GKA++NIL +  G  I  IMP    +  W NL +VFAT  G+VRRN
Sbjct: 608 LKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRN 667

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  + R+GKIAM L    E+++   C++++D++L T  G+ +RFP + +RVF GR 
Sbjct: 668 ALSDFTNVKRNGKIAMDLPEGVELVNARICSEDDDVMLVTNSGRAIRFPTTDVRVFKGRK 727

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI L  GD+V+SM+++ H+    ++R  Y+K     RR ++G T++      ++ 
Sbjct: 728 STGVRGIRLNDGDRVVSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEPSDEEAV 783

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            + N S E   E+   E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G 
Sbjct: 784 ADPNFSTELYAEMSAVENLILTITAGGSGKLSSSHDYPVRGRGGMGVMAMD--KAMRGGP 841

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV +F+T K E VVSV RI + 
Sbjct: 842 LVASFPVEMDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVARIADQ 901

Query: 901 EIVDEAESTE 910
              D+  S E
Sbjct: 902 G--DDEGSAE 909


>gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
 gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
          Length = 927

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/900 (54%), Positives = 653/900 (72%), Gaps = 5/900 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y K
Sbjct: 20  SDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+L++GQGNFGSVDGD PA+ RYTE 
Sbjct: 80  CARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQGNFGSVDGDMPASMRYTEA 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++  AA  L+ D+ KDTVDF+PNYD    EPVVL +R PN+LVNG GGIAVGMATNIP H
Sbjct: 140 KMAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNLLVNGAGGIAVGMATNIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A++D+P++  DAL++I+ GPDFPTG  I+GRT  +NA   GRGS+++RG 
Sbjct: 200 NLGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGR 259

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DRE IVVTE+PYQVNK  ++E+IAE+VREKR+  I+D+RDESDRQG R+VIE
Sbjct: 260 ASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLEGISDVRDESDRQGMRIVIE 319

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR AS DVILNQL+RYT++QS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR 
Sbjct: 320 LKRDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRDLLQIFLDFREEVVVRRV 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ LNKARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  + W   D+  L++L
Sbjct: 380 KFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEARERLQAKPWPVGDMMALVEL 439

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I D    + +  ++ L++ Q RAIL L L+RLTGLGRDDI  E N L   I+  L ILS 
Sbjct: 440 IADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIFGEANGLADTIQGHLTILSD 499

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R  +L II+ +L+ VKD+   PRRT I EG  +MEDED I REDMVVTV+H GYVKRV L
Sbjct: 500 RKNVLAIIRDDLIDVKDKFAVPRRTLIGEGDGEMEDEDLIPREDMVVTVTHGGYVKRVAL 559

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR Q RGGKG+SG+ M+DED +T +F  STHT VLFF++ G  YK K WRLP+G+PQ+
Sbjct: 560 NAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQS 619

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGKA +N+L +  G+ I  ++P PEDE++W +  ++FAT  G+VRRNKLSDF  +NR+GK
Sbjct: 620 RGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSSGDVRRNKLSDFATVNRAGK 679

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL+  D ++ V  CT ++D+LLTT LG+ +RF    +RVF GR+S GVRG+ L  GD
Sbjct: 680 IAMKLEGDDRMVGVGLCTADDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGVRLQDGD 739

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNISEER 789
           +VISMAI+   DA  +ER  Y+KH +A R+ ++G   E      +   D   +  ++ ER
Sbjct: 740 EVISMAILGRVDATPEERSAYVKHANAMRKALAGAEAEEDVAAPAEAEDEVADAALTVER 799

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             EL   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +        L A FPV +
Sbjct: 800 IAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGT-RLAAAFPVEE 858

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            D ++LV+  G +IR  ++++RI  R+++GV IF T KDE+VVSVER+ ES   DEA+  
Sbjct: 859 TDDLLLVTSGGQMIRTRMDQVRIVGRSSQGVTIFRTGKDEKVVSVERLPESGGSDEADVA 918



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 57/286 (19%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           EDE      D++   +  G V+R  LS +    R GK    + +  +D +  + + +   
Sbjct: 644 EDETTWGDYDIMFA-TSSGDVRRNKLSDFATVNRAGK--IAMKLEGDDRMVGVGLCTADD 700

Query: 588 SVLFFSSLGFVYKEKVWRLPIGS-PQARGK--------------ALINILSLNQGERITT 632
            VL  ++LG   + K   + +     + G               A++  +     ER   
Sbjct: 701 DVLLTTALGRAIRFKADDVRVFKGRDSTGVRGVRLQDGDEVISMAILGRVDATPEERSAY 760

Query: 633 I---------MPFPEDESS-------------------------WNNLYVVFATKHGNVR 658
           +         +   E E                               +++  T+ G  +
Sbjct: 761 VKHANAMRKALAGAEAEEDVAAPAEAEDEVADAALTVERIAELGAAEQFILTVTETGFGK 820

Query: 659 RNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R+   ++ +  R G+      +   +   + +     + +D+LL T  GQ +R  +  +R
Sbjct: 821 RSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAFPVEETDDLLLVTSGGQMIRTRMDQVR 880

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           +   R+S GV      K ++V+S+  +  +    +  +   +   A
Sbjct: 881 IVG-RSSQGVTIFRTGKDEKVVSVERLPESGGSDEADVASEEGGEA 925


>gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
 gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
          Length = 908

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/909 (54%), Positives = 637/909 (70%), Gaps = 12/909 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+     E  + G  +VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MEENT---PERPQYGGPTVSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEGGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  LL D+ KDTVDF+ NYDG   EP VL AR+PN+LVNG G
Sbjct: 118 DGDNAAAMRYTEVRMDKPAAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV D  +A+I+NPD+  + L+E I GPDFPTG ++LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVCDATLALIENPDLGSEDLIEYIPGPDFPTGGIMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS+VIR  + IE+   DR  IV+ EIPYQVNKAAM+EKIAE VREKRI  IA ++
Sbjct: 238 YIEGRGSVVIRSKTRIEEIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL G L A
Sbjct: 298 DESDRHGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLHGFLSA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRT + L KARDR+HVL GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 358 FITFREEVVARRTAFELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI + I LIDD ++T   DGT  LSE Q RAIL+LRL RLT LG  ++ +EL  L
Sbjct: 418 RWPAGDILEYIALIDDPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQEL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L IL+SR R++ II  EL  VK++   PRRT+IV+   DM+DED I REDMVV
Sbjct: 478 AAKIKEYLAILASRERIMEIISTELREVKEQFSVPRRTQIVDWSGDMDDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  L+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK
Sbjct: 538 TVTQGGYIKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP+G   ++GKA++NIL + QG  I  IMP    E  W++L V+FAT  G+VRRN
Sbjct: 598 LKTWRLPLGGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  + R+GKIAM L    E+++   C + +DI+L T  G+ +RFP + +RVF GR 
Sbjct: 658 ALSDFTNVKRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVFKGRK 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI L   D+V+SM+++ H DA  DER  Y+K     RR ++G  ++    +   +
Sbjct: 718 STGVRGIRLQGDDRVVSMSVIRHFDASADERAAYLK----MRRALAGAPDDG---EEPEA 770

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G+I+ +R +E++  E  ILT+S +G GK +SS+D+ +  R G G++A D  K    G 
Sbjct: 771 AAGDITPDRFEEMQAAENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGD 828

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVA FPV  +DQI+L + +G  IRVPV+ I   SR+  GV +F T K E VVSV  I E 
Sbjct: 829 LVASFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVVSVAWIAEK 888

Query: 901 EIVDEAEST 909
              D+  ++
Sbjct: 889 GDQDDDAAS 897


>gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222]
 gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222]
          Length = 913

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/918 (52%), Positives = 635/918 (69%), Gaps = 15/918 (1%)

Query: 1   MTEHIISSDEEEEKGITS----------VSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +   + D+  E G +           + I  EM++SYL YA++VI+ RAIPDLRDGLK
Sbjct: 1   MADIPENDDDTPENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+LF M + G   +K Y K AR  G+ MGKYHPHG+A+IYDAL RMAQD+S+ L L
Sbjct: 61  PVHRRVLFAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS+DGD PAA RYTE R+ K + +LL D+ KDTV+F+ NYDG  +EP VL AR
Sbjct: 121 LDGQGNFGSMDGDSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPAR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+EI+ GPDFPTG +
Sbjct: 181 FPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGI 240

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+G + AY  GRGSI++R  + IE+T   R+ I++ EIP+QVNKA+++EKIAEL +E
Sbjct: 241 ILGRSGARKAYLEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKE 300

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           KRI  IA ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE
Sbjct: 301 KRIEGIAHVQDESDRVGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGANMLALNGGRPE 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + TL   L  F+ FREEVV RRT Y L KAR+RAHVL GLA+AV+N+DEVV  IR S + 
Sbjct: 361 QLTLRDFLTHFLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADA 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
             AR  LM R W A +I + + LIDD  + +  DGT  LSE Q RAILELRL RLT LG 
Sbjct: 421 AEARERLMTRRWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGV 480

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
            ++ +EL SL   I+E L IL+SR R++GII  EL  VK+    PRRT I +   D++DE
Sbjct: 481 QEVTDELKSLAEAIREFLAILASRERIMGIISDELREVKNLFAVPRRTEITDWAGDLDDE 540

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I REDMVVT++  GY+KR  L+ +RAQRRGGKG SG+  +++D VT LF+ +THT +L
Sbjct: 541 DLIEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELL 600

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K WRLP+G   A+GKA++NIL +  G  I  +MP    +S W+   V+F
Sbjct: 601 FFTTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIF 660

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  G+VRRN LSDF  + R+GKIAMKL    E++     T+ +D++L T  G+ +RF  
Sbjct: 661 STSEGDVRRNALSDFANVMRNGKIAMKLPEGVELIGARMATESDDVMLFTAAGRAIRFQT 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF GR+S GVRGI LA GD+V+SM+I+ H +AD  ER  Y+K   A    +    E
Sbjct: 721 TDVRVFKGRDSTGVRGIRLASGDRVVSMSIIRHFEADAGERAAYLKMRRAVEGALDDGAE 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                  D+ VE  IS+ER  E+   E  ILT++ +G GK +SS+D+ +  R G+G+ A 
Sbjct: 781 --ADEDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAM 838

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G LVA FPV+ +DQI+L +  G  IRVPV+ I   SR+  GV +F+TA  E 
Sbjct: 839 D--KAMRGGPLVASFPVDRDDQIMLATSTGQSIRVPVDGISFRSRSAGGVRVFNTAPGEE 896

Query: 891 VVSVERIRESEIVDEAES 908
           VVSV RI E+   DEAE+
Sbjct: 897 VVSVARIAEN-GEDEAEA 913


>gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025]
          Length = 904

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/901 (53%), Positives = 636/901 (70%), Gaps = 9/901 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
               G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K 
Sbjct: 3   RPHGGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RY
Sbjct: 63  YRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNI
Sbjct: 123 TEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++
Sbjct: 183 PPHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RV
Sbjct: 243 RAKVRVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV 
Sbjct: 303 VIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVA 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D 
Sbjct: 363 RRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADY 422

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I LIDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDI
Sbjct: 423 IRLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDI 482

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L SR R++ II  EL  VK     PRRT I E   D+EDED I REDMVVT++  GY+KR
Sbjct: 483 LGSRERIMAIISDELREVKALFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKR 542

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL+ +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G 
Sbjct: 543 TPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGG 602

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++NIL +  G  I  +M   E E+ W+ L VVFAT  G+VRRN+LSDF  + R
Sbjct: 603 RTAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNRLSDFTNVKR 662

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIAMKL     +++V  C + +D+++ T +G+ +RF  + +RVF+GR+S GVRGI LA
Sbjct: 663 NGKIAMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDSTGVRGIRLA 722

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GNISEER 789
           +GD+V+SM+++ H +AD  ER  Y+K     RRL++G TEE  S +++ ++E G +S  R
Sbjct: 723 EGDRVVSMSVIRHFEADPAERAAYLKQ----RRLMAGVTEEAESDEDEDAIEAGQLSPTR 778

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E  ILT++ +G GK +SS+D+ +  R G+G+ + + S     G LVA FP+  
Sbjct: 779 YAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTSFEKSMRG--GPLVACFPIEM 836

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +DQ++L +  G  IRVPV +I   SR+  GV +F T  +E VVSV RI   +  D AE  
Sbjct: 837 SDQVMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGGNEEVVSVARIA--DAGDTAEVI 894

Query: 910 E 910
           E
Sbjct: 895 E 895


>gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 925

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/901 (51%), Positives = 625/901 (69%), Gaps = 21/901 (2%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G      Y
Sbjct: 38  DTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPY 97

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYT
Sbjct: 98  RKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYT 157

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP
Sbjct: 158 EARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIP 217

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI+IR
Sbjct: 218 PHNLGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIR 277

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              +IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G RVV
Sbjct: 278 SRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVV 337

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKR A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV+ R
Sbjct: 338 IDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITR 397

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+   I
Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI+         G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L++L
Sbjct: 458 KLIEAVE-DFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVL 516

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +R RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+KR 
Sbjct: 517 RNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRT 576

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP G+P
Sbjct: 577 PLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAP 636

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +  +
Sbjct: 637 QARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSN 696

Query: 672 GKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK A++ D    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRGI+L
Sbjct: 697 GKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITL 756

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VIS++ +   +   ++R  Y++                ++          +  E+
Sbjct: 757 KDGDEVISLSTLRGFETTVEDRDKYLR----------------SAAWKTDPAPAELPPEK 800

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +  +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP +D
Sbjct: 801 IKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHD 858

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            DQ++LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI +    +E  + 
Sbjct: 859 GDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEEGTV 918

Query: 910 E 910
           E
Sbjct: 919 E 919


>gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45]
 gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45]
          Length = 915

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/920 (51%), Positives = 633/920 (68%), Gaps = 16/920 (1%)

Query: 1   MTEHIISSDEEEEKGITS--------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           MT+     + ++E             +SI DEM++SYL YA++VI+ RAIPDLRDGLKPV
Sbjct: 1   MTDTPEPPENDDEMSGPERPRYSGPGISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ + + G   +K Y KCA   G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+
Sbjct: 61  HRRILYTLWENGQTKSKSYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTE RL++ A  LL+D+ KDTVDF PNY     EPVVL ARYP
Sbjct: 121 GQGNFGSMDGDPPAAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           NVLVNG  GIAVGMAT IP HNLGEV+D  +A+I+ PD+  + L+E I  PDFPTG VIL
Sbjct: 181 NVLVNGAEGIAVGMATRIPPHNLGEVIDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+G + AY  GRGS++IR  + IE+   DR  IV+ EIPYQVNKA M+E+IAE VR+K+
Sbjct: 241 GRSGARKAYLEGRGSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  IA ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q  F  NM+ALNG +PE+ 
Sbjct: 301 IEGIAHVQDESDRSGVRVVVELKRDATAEVVLNQLFRFTPMQVSFGCNMLALNGGRPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL   L AF+ FRE+VV RRT YLL KAR+R+H+L GLA+AVAN+DEVV  IR S +   
Sbjct: 361 TLRAFLTAFLDFREDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASADAAE 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM R W A +I   I LIDD ++ +  DGT  LSE Q RAILELRL RLT LG  +
Sbjct: 421 ARDKLMTRRWPAHEIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +EL  L  +IKE L+IL SR R++ II  E+++VK++   PRRT I +   DM+DED 
Sbjct: 481 VTDELEELAKKIKEYLEILGSRERIMEIITNEMIAVKEQFAVPRRTEIADWAGDMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG  ++++D VT LF+ +THT +LFF
Sbjct: 541 IEREDMVVTVTAGGYIKRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G  YK K WRLP G   ++GKA++NIL + QG  +  IMP   DE  W++L +VFAT
Sbjct: 601 TTEGMAYKLKCWRLPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFAT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
             G+VRRN+LSDF  + R+GKIAMK +  DE   +++   C++++DI+L T  G+ +RFP
Sbjct: 661 SKGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICSEDDDIMLVTDSGRAIRFP 720

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RVF  RNS GVRG+ L  GD+V+SM+++ H +A+ DER  Y+K   A   L     
Sbjct: 721 VPDVRVFNSRNSTGVRGVRLLNGDEVVSMSVIRHFEAESDERASYLKMRRAMAGLA---D 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +  TS + + + +  +S+ER  E+   E  ILT++ KG GK +SS+D+ I  R G G+ A
Sbjct: 778 DAETSDEEEGNADSRLSQERYAEMTAAENLILTITAKGLGKLSSSHDYPIRGRGGMGVTA 837

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            + S     G +VA FPV   DQI+L +  G  IRVPV+ I   SR   GV +F+T   E
Sbjct: 838 WEKSMRG--GEIVASFPVEKGDQIMLATSTGQSIRVPVDGISFRSRGAGGVRVFNTRAGE 895

Query: 890 RVVSVERIRESEIVDEAEST 909
            VVSV  I +    DE    
Sbjct: 896 TVVSVAWIADQGDEDEDAEA 915


>gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 925

 Score =  870 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/901 (51%), Positives = 625/901 (69%), Gaps = 21/901 (2%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G      Y
Sbjct: 38  DTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPY 97

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYT
Sbjct: 98  RKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYT 157

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP
Sbjct: 158 EARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIP 217

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI+IR
Sbjct: 218 PHNLGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIR 277

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              +IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G RVV
Sbjct: 278 SRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVV 337

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKR A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV+ R
Sbjct: 338 IDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITR 397

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+   I
Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI+         G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L++L
Sbjct: 458 KLIEAVE-DFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVL 516

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +R RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+KR 
Sbjct: 517 RNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRT 576

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP G+P
Sbjct: 577 PLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAP 636

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +  +
Sbjct: 637 QARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSN 696

Query: 672 GKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK A++ +    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRGI+L
Sbjct: 697 GKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITL 756

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VIS++ +   +   ++R  Y++                ++          +  E+
Sbjct: 757 KDGDEVISLSTLRGFETTVEDRDKYLR----------------SAAWKTDPAPAELPPEK 800

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +  +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP +D
Sbjct: 801 IKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHD 858

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            DQ++LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI +    +E  + 
Sbjct: 859 GDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEEGTV 918

Query: 910 E 910
           E
Sbjct: 919 E 919


>gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 925

 Score =  870 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/901 (51%), Positives = 625/901 (69%), Gaps = 21/901 (2%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G      Y
Sbjct: 38  DTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPY 97

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYT
Sbjct: 98  RKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYT 157

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP
Sbjct: 158 EARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIP 217

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI+IR
Sbjct: 218 PHNLGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIR 277

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              +IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G RVV
Sbjct: 278 SRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVV 337

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKR A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV+ R
Sbjct: 338 IDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITR 397

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+   I
Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI+         G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L++L
Sbjct: 458 KLIEAVE-DFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVL 516

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +R RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+KR 
Sbjct: 517 RNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRT 576

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP G+P
Sbjct: 577 PLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAP 636

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +  +
Sbjct: 637 QARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSN 696

Query: 672 GKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK A++ +    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRGI+L
Sbjct: 697 GKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITL 756

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VIS++ +   +   ++R  Y++                ++          +  E+
Sbjct: 757 KDGDEVISLSTLRGFETTVEDRDKYLR----------------SAAWKTDPAPAELPPEK 800

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +  +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP +D
Sbjct: 801 IKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHD 858

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            DQ++LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI +    +E  + 
Sbjct: 859 GDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEEGTV 918

Query: 910 E 910
           E
Sbjct: 919 E 919


>gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
 gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
          Length = 905

 Score =  870 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/912 (51%), Positives = 636/912 (69%), Gaps = 20/912 (2%)

Query: 1   MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+ I +  ++  +        +SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI
Sbjct: 1   MTDEIKTPTDDTPEIPSYDGPQISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G   NK Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGN
Sbjct: 61  LYAMHENGYTHNKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS+DGD  AA RYTE RL K + +LL D+ K+TV+F+ NYDG   EP VL ARYPN+LV
Sbjct: 121 FGSMDGDNAAAMRYTEARLDKPSEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLV 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG GGIAVGMATNIP HNLGEV+D  +A+IDNP++    LME +  PDFPTGAVILGR+G
Sbjct: 181 NGAGGIAVGMATNIPPHNLGEVIDATLALIDNPELTSSDLMEYVPAPDFPTGAVILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
              AY  GRGS++IR  + +E+    R  I++ EIPYQVNKA+M+EKIAEL R+K+I  I
Sbjct: 241 AVKAYNEGRGSVIIRAKTRVEEIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGI 300

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           + ++DESDR G RVV+ELKR A+A+V+LNQL+R+T LQ+ F  NM+ALNG KPE+ TL  
Sbjct: 301 SHVQDESDRVGVRVVVELKRDATAEVVLNQLFRFTPLQTSFGCNMLALNGGKPEQLTLYK 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L  F++FREEVV RRT + LNKAR+R+H+L GLA+AV+N+DE+V  IR S +P  AR +
Sbjct: 361 FLSYFISFREEVVARRTAFELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREK 420

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R W A+DI   I LIDD S+T+  D +  LSE Q RAILELRL RLT +G  ++ +E
Sbjct: 421 LMTRRWPAADISQYISLIDDPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  +I+  L+IL SR R++ II  EL  V ++   PRRT I+E   DM+DED I +E
Sbjct: 481 LEELAGKIQNYLEILRSRDRIMSIISDELKEVHEKFAVPRRTEIIEWAGDMDDEDLIEKE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVT+++ GY+KR  L+ +R Q+RGGKG  G+  +DEDFVT++F+ +THT++LFF++ G
Sbjct: 541 DMVVTITNSGYIKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VYK K WRLP+G   A+GKA++NIL ++ G  I  +MP    +  W NL +VFAT  G 
Sbjct: 601 MVYKLKTWRLPLGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATDAGG 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRRN LSDF  +  +GKIAMKL     I++V   T+ +D LLTT LG+ +RFP + +RVF
Sbjct: 661 VRRNALSDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDVRVF 720

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GVRGI LA GD+V+SMA++ H +A  DER  Y K   A              L 
Sbjct: 721 KGRDSTGVRGIKLAPGDKVVSMAVIRHVNASSDERTAYFKMRRA--------------LS 766

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D +   +IS+ER  EL   E +IL ++  GFGKR+S++++R+S R G+G+ A ++ + +
Sbjct: 767 EDETPNNDISQERYNELSELEDWILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRD 826

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +   +VA F V++ DQI+L +  G  IR PV+ I +  R++ GV +F+T   E+VVSV  
Sbjct: 827 DT--VVAAFTVHEEDQIMLATSTGQSIRCPVSGISLQGRSSSGVTVFNTKDGEKVVSVAY 884

Query: 897 IRESEIVDEAES 908
           I ++E  D ++ 
Sbjct: 885 IADTEDSDVSDD 896


>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
 gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040]
          Length = 912

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/920 (53%), Positives = 644/920 (70%), Gaps = 19/920 (2%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++   + +  +E           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPETPENPDENLPQRPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+E + GPDFPTG V+LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYVPGPDFPTGGVMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI
Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRKFLTSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A+DI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT LG  ++
Sbjct: 421 RHKLMTRRWPAADIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+ILSSR R++ II  EL  V++    PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLEILSSRERIMSIIADELAEVRESFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP G   ++GKA++NIL +  G  I  IMP   DE  W++L ++FAT 
Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN+LSDF  + R+GKIAMK +      ++++   C++++DI+L T  G+ +RFP 
Sbjct: 661 AGTVRRNRLSDFTNVMRNGKIAMKFEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPT 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  RNSVGVRGI L + D+V+SM+++ H+    ++R  Y+K     RR ++G T+
Sbjct: 721 TEVRVFNSRNSVGVRGIKLGEDDEVVSMSVIRHSKYTPEQRSAYLK----MRRAMAGLTD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           E  S   D+  + N S E   E+   E  ILT++  G GK +SS+D+ +  R G G+ A 
Sbjct: 777 EDAS-DEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAM 835

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    GALVA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV IF+T K E 
Sbjct: 836 D--KAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEE 893

Query: 891 VVSVERIRESEIVDEAESTE 910
           VVSV  I   +  D+ E+ E
Sbjct: 894 VVSVAWIA--DNGDDEETVE 911


>gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003]
 gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 913

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/916 (51%), Positives = 634/916 (69%), Gaps = 11/916 (1%)

Query: 1   MTEHIISSDEEEEKGITS------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+ I  +D   +    +      VSI +EM+ +YL YA++VI+ RAIPDLRDGLKP HR
Sbjct: 1   MTDIIDPTDPSGDTPKRAHHAGPVVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G   +K Y K AR  G+VMGKYHPHG+AAIYDAL RMAQD+S+ L L++GQ
Sbjct: 61  RILYAMHETGNTHDKPYRKSARPVGDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+
Sbjct: 121 GNFGSMDGDSAAAMRYTEVRMDKPAAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNM 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           LVNG GGIAVGMATNIP HNLGEV+D  +A+I+NPD+  +ALM+ + GPDFPTGA I+GR
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVIDATLALIENPDLSSEALMDYVPGPDFPTGAQIMGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            G + AY  GRGS++IR  + IE+   DR  I++ EIPYQVNKA M+EK+A+LVREK++ 
Sbjct: 241 GGARKAYLEGRGSVIIRAKTRIEEIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IA + DESDR G RVVIELKR A+ADV+LNQLYR+T LQ+ F  NM+ALNG +PE+ TL
Sbjct: 301 GIASIADESDRVGVRVVIELKRDATADVVLNQLYRFTPLQTSFGCNMLALNGGRPEQLTL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L  F+AFREEVV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR
Sbjct: 361 RDFLSHFIAFREEVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R W A +I + + LIDD  + +  DGT  LSEVQ RAIL+LRL RLT +G  ++ 
Sbjct: 421 DRLMERRWPAHEIVEYLRLIDDPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVT 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +EL  L  +I++ L IL+SR R++ II  EL  V+     PRRT IV+   D++DED I 
Sbjct: 481 DELAELAGKIRDYLAILASRERIMAIIATELREVRAAHAVPRRTEIVDWAGDLDDEDLIE 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           REDMVVT++  GY+KR PL+ +RAQRRGGKG + +  +++D VT LF+ +THT +LFF++
Sbjct: 541 REDMVVTITSGGYIKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTT 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  K WRLP+    ++GKA++NIL + QG  + ++MP  E E +W++  V FAT  
Sbjct: 601 DGMVYSLKCWRLPLAGRTSKGKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSD 660

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+VRRN LSDF ++ ++GK AM+L     ++    C +E+DI+L T  G+ +RFP+  +R
Sbjct: 661 GDVRRNALSDFAKVMKNGKRAMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           +F GR+S GVRG+ LA+GD+V+SM+++ H +A+  ER  ++K   A+    + D  E   
Sbjct: 721 IFKGRSSTGVRGVRLAEGDKVVSMSVIRHFEAEPWERDAFVKRYRAELGGETEDEAETDR 780

Query: 775 LKNDSSV--EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              D +   EG +S+ R  E+   +  ILT++ KG GK +SS+ + +  R G+G+ A + 
Sbjct: 781 DAEDEAEGGEGVLSDARYAEMLAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTAFEK 840

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S     GALVA FPV   DQ++L +  G  IR PV  I   SRA  GV +F+T  +E VV
Sbjct: 841 SMRG--GALVASFPVEPTDQVMLATSTGQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVV 898

Query: 893 SVERIRESEIVDEAES 908
           SV R+ +    DEAE+
Sbjct: 899 SVARVADP-GDDEAEA 913


>gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
          Length = 928

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/915 (53%), Positives = 645/915 (70%), Gaps = 16/915 (1%)

Query: 3   EHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           E   + DE      +    +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+
Sbjct: 22  ETPENPDENLPARPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILY 81

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFG
Sbjct: 82  AMHETGNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFG 141

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+ K A F+L D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG
Sbjct: 142 SMDGDNPAAMRYTEVRMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNG 201

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L++ + GPDFPTG V+LGR+G +
Sbjct: 202 AGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGAR 261

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI  +A 
Sbjct: 262 KAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAH 321

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           ++DESDR G RVV+ELKR A+A+V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L
Sbjct: 322 VQDESDRNGVRVVVELKRDATAEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRKFL 381

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM
Sbjct: 382 TSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLM 441

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W ASDI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT LG  ++ +EL 
Sbjct: 442 TRRWPASDIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELE 501

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +IKE L+ILSSR R++GII  EL  V++    PRRT IV+   DM+DED I REDM
Sbjct: 502 ELAAKIKEYLEILSSRERIMGIIADELTEVRNSFAVPRRTEIVDWSGDMDDEDLIEREDM 561

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G V
Sbjct: 562 VVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMV 621

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YK K WRLP G   A+GKA++NIL +  G  I  IMP    E  WN+L ++FAT  G VR
Sbjct: 622 YKLKTWRLPQGGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVR 681

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           RN+LSDF  + R+GKIAMK +  +E   +++   C++++DI+L T  G+ +RFP + +RV
Sbjct: 682 RNRLSDFTNVMRNGKIAMKFEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRV 741

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           F  RNSVGVRGI L  GD+V+SM+++ H+    ++R  Y+K     RR ++G T+E  S 
Sbjct: 742 FNSRNSVGVRGIKLGDGDEVVSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDEDAS- 796

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             D+  + N S E   E+   E  ILT++  G GK +SS+D+ +  R G G+ A D  K 
Sbjct: 797 DEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KA 854

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              GALVA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV IF+T K E VVSV 
Sbjct: 855 MRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVA 914

Query: 896 RIRESEIVDEAESTE 910
            I   +  D+ E+ E
Sbjct: 915 WIA--DNGDDEETVE 927


>gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 924

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/893 (53%), Positives = 630/893 (70%), Gaps = 8/893 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G    K Y K AR 
Sbjct: 25  QVSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARA 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PSASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +A+I NPD+  + L++ +  PDFPTG +ILGRTG + AY  GRGS+VIR  + +E
Sbjct: 205 IIDATLALITNPDLTSEELIQYVPAPDFPTGGIILGRTGARKAYIEGRGSVVIRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNKA+++EKIAE VR+KRI  I+ ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FREEVV RRT + L
Sbjct: 325 ATAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFLDFREEVVARRTAFEL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DE+V  IR S +P  AR +LM R W A+DI + I LIDD 
Sbjct: 385 RKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L   I+E L+IL+SR R+
Sbjct: 445 THRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  VKD+   PRR+ I++   DMEDED I  EDMVVTV+  GY+KR PL+ +R
Sbjct: 505 MGIITDELQEVKDKFAVPRRSEIIDWSGDMEDEDLIESEDMVVTVTATGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  +++D VT+LF+ +THT +LFF++ G VYK K WRLP G   A+GKA
Sbjct: 565 AQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLPQGGRTAKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +INIL + QG  +  +MP   DE  W +L +VFAT  G+VRRN LSDF  + R+GKIAMK
Sbjct: 625 IINILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTNVMRNGKIAMK 684

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C++++D++L T  G+ +RF  + +RVF GR+S GVRGI LA+G  V+S
Sbjct: 685 LPEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGIRLAEGRSVVS 744

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA++ H +A  ++R  Y+K     RR + G ++++    ++ +     + E+ +E++  E
Sbjct: 745 MAVIRHFEASAEDRAAYLK----MRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAE 800

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT+S  G GK +SS+D+ +  R G+G+ A D  K    G LVA FPV   DQI+L +
Sbjct: 801 DLILTISNGGSGKLSSSHDYPVRGRGGQGVAAMD--KAMRGGPLVACFPVEIEDQIMLAT 858

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             G  IR P+  I   SR+  GV +F TAK E VVSV  I +    DEAE  E
Sbjct: 859 STGQSIRCPIKGISFRSRSAGGVKVFDTAKKETVVSVALIADQG--DEAEDAE 909



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 90/268 (33%), Gaps = 53/268 (19%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V  +  G V+R  LS +    R GK    + + +   + +  I S    V+  +  G  
Sbjct: 655 IVFATTAGDVRRNALSDFTNVMRNGK--IAMKLPEGVELVNARICSEDDDVMLVTDAGRA 712

Query: 599 YKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF------- 650
            + +   + +     + G   +  + L +G  + ++      E+S  +            
Sbjct: 713 IRFRTTDVRVFKGRDSTG---VRGIRLAEGRSVVSMAVIRHFEASAEDRAAYLKMRRAVE 769

Query: 651 ------------------------------------ATKHGNVRRNKLSDFIQINRSGKI 674
                                                +  G+ + +   D+    R G+ 
Sbjct: 770 GMSDDVDGEDDEVAASDTFTMEQYEEMRAAEDLILTISNGGSGKLSSSHDYPVRGRGGQG 829

Query: 675 AMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              +D       +++      E+ I+L T  GQ +R PI     F  R++ GV+    AK
Sbjct: 830 VAAMDKAMRGGPLVACFPVEIEDQIMLATSTGQSIRCPI-KGISFRSRSAGGVKVFDTAK 888

Query: 732 GDQVISMAIVLHADADYDERICYMKHMS 759
            + V+S+A++     + ++     +   
Sbjct: 889 KETVVSVALIADQGDEAEDAEIISETGP 916


>gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 940

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/896 (52%), Positives = 642/896 (71%), Gaps = 9/896 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V++ +EM  SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G   +K Y K ARI
Sbjct: 24  PVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSARI 83

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G+VMGKYHPHG+AAIYDAL R+AQ +SLR+ LI+GQGNFGS+DGDP AA RYTE RL +
Sbjct: 84  NGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARLAR 143

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A FLL+D+ +DTVDF+PNYD S  EP VL A YPN+LVNG  GIAVGMAT IPTHN  E
Sbjct: 144 SASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNPTE 203

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+IDNPDI LD LM +I GPDFPTG +ILGR+GI++A+ TG+GSI +R  +  E
Sbjct: 204 VIDATLAMIDNPDITLDELMTVIPGPDFPTGGLILGRSGIRSAFETGKGSITVRARTDFE 263

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +  G R+ IV++EIPYQVNKA + E++AELVR K+I  I+D+RDESDR G RVVIELKR 
Sbjct: 264 EVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELKRD 323

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ DV+LN L+R+T LQ  + +NM+AL+G +P    L  +L  F+ FRE+V++RR ++ L
Sbjct: 324 ATPDVVLNHLFRFTQLQISYGINMLALDGGQPRLMGLRDVLSTFIRFREDVILRRARFEL 383

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKARDRAH+LVGLAIAVAN+DEV+R+IR SP+  +AR  LM+R W A+D+  L+ LIDD 
Sbjct: 384 NKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLIDDG 443

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +    T+ L+EVQ R ILELRL RLTGL RD I NE+  +   I E L+I+ S  R 
Sbjct: 444 GNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHIRR 503

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + ++++EL  ++ EL++PRR+ I + L D +DE  I    MVVT++  G++KR PL V+R
Sbjct: 504 MEVMREELAVIRAELNSPRRSEINDSLADQDDESLIEPGQMVVTITRDGFIKRTPLDVFR 563

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG+GR+   MR +D VT  F   TH  VLFFSS G  Y++KVWRLP   P A+G+A
Sbjct: 564 QQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKGRA 623

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+N+L     + IT ++P P+DES W  L++VFAT  G +RRN+LSDF  +  SG IAMK
Sbjct: 624 LVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKNVRASGLIAMK 683

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAGRNSVGVRGISLAKGDQV 735
           LD  D ++ V TC + +DI+L ++LG+C+RF  +    RVFAGR S GVRG+ LA+GD+V
Sbjct: 684 LDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGDEV 743

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND------SSVEGNISEER 789
           IS++++ H +A  +ER  Y+++ SA+RR  +G+ ++I +   +      +  +  +S ER
Sbjct: 744 ISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVTVDDTALSPER 803

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L+  E+F+LTV+  GFGKR+S+YD+R+S R G+GI   +++  N   A+ A FPV  
Sbjct: 804 IAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGR-AVAATFPVRP 862

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            D ++LV+D G LIRVP +++RI  R+T GV +F   KDE V SV  + E+E VD+
Sbjct: 863 GDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDD 918



 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 85/252 (33%), Gaps = 19/252 (7%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +     RS       D  DE            ++  T+ G   R P+   R    R   G
Sbjct: 517 ELNSPRRSEINDSLADQDDE----SLIEPGQMVVTITRDGFIKRTPLDVFRQ-QHRGGRG 571

Query: 724 VRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
               S+   D V  S     H    +             R   +G T +  +L N     
Sbjct: 572 RAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKGRALVNLLPEL 631

Query: 783 GNISEERCQELKLKEQF-----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           G+        L   E       ++  +  G  +R    DF+  N    G+ A  + + + 
Sbjct: 632 GSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFK--NVRASGLIAMKLDEGDR 689

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRI-ASRATKGVVIFSTAKDERVVSV 894
              L+ V    + D I+L S  G  IR   NE  +R+ A R + GV     A+ + V+S+
Sbjct: 690 ---LIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGDEVISL 746

Query: 895 ERIRESEIVDEA 906
             +R  E   E 
Sbjct: 747 SVLRHVEATPEE 758


>gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
          Length = 935

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/902 (55%), Positives = 660/902 (73%), Gaps = 8/902 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  +SI  E++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G   +KKYVK
Sbjct: 29  QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I G+VMG+YHPHG++AIYDAL RMAQ +S+ LLL++GQGNFGSVDGDPPAA RYTE 
Sbjct: 89  SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ KAA  L+ D+ K T+DF  NYDGS +EP VL +R PN+LVNG GGIAVGMATNIP H
Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VD C+AV+D+P + ++ L+ I+ GPD+PTG  ILGR+G + A  TGRGS+V RG 
Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEILGRSGARLALMTGRGSVVTRGK 268

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE    DRE IV+TEIPYQVNK++M+E IAELVR+KRI  I+D+RDESDRQG RVV+E
Sbjct: 269 ASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVVE 328

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR AS DVILNQLYR+TSLQ+ F VNM+AL+  +P++  L  +L  F+ FRE+VVVRR 
Sbjct: 329 LKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGRPQQMGLRRLLDIFLDFREDVVVRRI 388

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKARDR HVLVG+ IAVAN+DEV+ IIR S +P  AR  L  ++W + D+  LIDL
Sbjct: 389 RFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLIDL 448

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I D    +     + L++ Q RAIL L L+RLTGLGRD+I +E  +L   I   L+ILSS
Sbjct: 449 IADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEILSS 508

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ I+++EL+ VK +   PRRT+I E   D+EDED I REDMVVTV+H GYVKR PL
Sbjct: 509 RERIMAIVREELVEVKAQFAVPRRTQIAESEGDIEDEDLIPREDMVVTVTHSGYVKRTPL 568

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S+YR Q RGGKGRSG+ M+DED +  ++  STH  +LFFSS G  +K KVWRLP+G+PQ+
Sbjct: 569 SMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKVWRLPVGNPQS 628

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA +N+L +  G+ I+ I+  PE+E+ W+ L ++FAT+ G++RRNKLSDF+ +NR+GK
Sbjct: 629 KGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLSDFVNVNRAGK 688

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL+  D I+ V  C+ + D+LL+T  G+ +RF +  +RVF GR+S GVRG+ L   D
Sbjct: 689 IAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTGVRGVRLLGDD 748

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEE 788
           +VISMAI+  +DA   ER  Y+K  SA+R  + G  ++     +     ++S    +++E
Sbjct: 749 KVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEETSDIAELTDE 808

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  ELK +E+FILT+S+ GFGKR+SS++FR + R G+GI A D+SK    G L A FP+ 
Sbjct: 809 RYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKRG--GKLAACFPIE 866

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             D I+LV+  G LIR  V ++RIA R T+GV IF TA  ERVVSVER+ +S   DEA +
Sbjct: 867 ATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTIFRTAGGERVVSVERLPDS-GEDEAGT 925

Query: 909 TE 910
            E
Sbjct: 926 DE 927


>gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
 gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
          Length = 906

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/893 (52%), Positives = 632/893 (70%), Gaps = 7/893 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 1   MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 61  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+IDNPD+  + L++ + GPDFPTGA++LGR+G + AY  GRGS++IR  + +E+
Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRAKTRVEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNKA+M+EKIAE  REKRI  IA ++DESDR G RVV+ELKR A
Sbjct: 241 IRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL G L AF+AFREEVV RRT Y L 
Sbjct: 301 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRGFLTAFIAFREEVVARRTAYDLR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM+R W A DI + I LIDD +
Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPT 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L IL+SR R++
Sbjct: 421 HRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIM 480

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  V+D+   PRRT I +   DM+DED I RE+MVVTV+  GY+KR  L+ +RA
Sbjct: 481 EIIADELREVRDQFAVPRRTEITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTALADFRA 540

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G  YK K WRLP G   A+GKA+
Sbjct: 541 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTAKGKAI 600

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  +  IMP    E  WN+L +VFAT  G VRRN+LSDF  +  +GKIAMK 
Sbjct: 601 VNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNVKSNGKIAMKF 660

Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +    +++   C++E+D++L T  G+ +RFP + +RVF  RNSVGVRGI L+  D+V
Sbjct: 661 EDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKV 720

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H +A  +ER+ Y+K       L   + E  +  +++++V G +S ER  E+  
Sbjct: 721 VSMSVIRHFEASSEERVAYLKQRRLMAGLT--EDEAASDDEDETAVAGQLSPERYAEMSA 778

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++ KG GK +SS+D+ +  R G G+ A   S  N  G ++A FPV   DQ++L
Sbjct: 779 VENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSN--GPIIACFPVEMPDQVML 836

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            + KG  IR+PV+ I   SR+  GV +F+T K+E VVSV  I +    DE E+
Sbjct: 837 ATSKGQSIRIPVDGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEA 889



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 23/238 (9%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFVTDL-----FIVSTHTS 588
            ED V+ V++ G   R P +  R    R   G  G+ +  ED V  +     F  S+   
Sbjct: 677 EEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKVVSMSVIRHFEASSEER 736

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V +           +      S      A+   LS  +   ++ +              +
Sbjct: 737 VAYL--KQRRLMAGLTEDEAASDDEDETAVAGQLSPERYAEMSAV-----------ENLI 783

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAM---KLDSRDEILSVETCTQENDILLTTKLGQC 705
           +  T  G  + +   D+    R G       K  S   I++       + ++L T  GQ 
Sbjct: 784 LTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSNGPIIACFPVEMPDQVMLATSKGQS 843

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +R P+     F  R++ GVR  +  K ++V+S+A +     + ++         AQ +
Sbjct: 844 IRIPV-DGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEAQTENQTEAQDQ 900


>gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
 gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
          Length = 910

 Score =  866 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/912 (50%), Positives = 635/912 (69%), Gaps = 5/912 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+       E   G   V+I  EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTDTT--DQTEGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR+ G+VMGKYHPHG+AAIYDA  RMAQ +S+R+ LI+GQGNFGSV
Sbjct: 59  QEAGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL  AA  LL D+ KDTVDF+P YD S  EP VL A +PN+LVNGG 
Sbjct: 119 DGDPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN  E++D  + +I  P+  LD LM I+ GPDFPTG +ILGR+GI++A
Sbjct: 179 GIAVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE+   DR  I+V+E+PYQVNKA +LE+IAELVR K I  IADLR
Sbjct: 239 FETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P +  L   L  
Sbjct: 299 DESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDC 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFRE+V++RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+  +AR  LM R
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ L++LIDD    I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G  I E L+I++SR R L +++ ELL+V+  +  PR T I + + D +DE  I    MVV
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL  +RAQ RGG+GR+   MR +D +T  F   TH  VLFFS  G  ++
Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  +P A+G+A++NIL    G+ +T ++P P+DES WN+L++VFAT  GNVRRN
Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +L+DF  +  +G IAMKLD  D ++ V TC + +D+ L T+  +C+RF I+    RVFAG
Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+S GVRGI L  GD+VIS++++ H +A  DER  Y+K+ +AQRR    + E      ++
Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++ +  ++ ER   L+  E+ ILTV+  GFGK +S+Y++R++ R G+GI    ++  N  
Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            A+ A FPV   D I+LV+D+G LIR PV+++RI  R   GV +    KDE+V SV  + 
Sbjct: 839 -AVAASFPVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVL 897

Query: 899 ESEIVDEAESTE 910
           +    +  E  +
Sbjct: 898 DDSGDEAGEEQD 909


>gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
 gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
          Length = 910

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/912 (50%), Positives = 635/912 (69%), Gaps = 5/912 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+       E   G   V+I  EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTDTT--DQTEGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR+ G+VMGKYHPHG+AAIYDA  RMAQ +S+R+ LI+GQGNFGSV
Sbjct: 59  QEAGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL  AA  LL D+ KDTVDF+P YD S  EP VL A +PN+LVNGG 
Sbjct: 119 DGDPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN  E++D  + +I  P+  LD LM I+ GPDFPTG +ILGR+GI++A
Sbjct: 179 GIAVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE+   DR  I+V+E+PYQVNKA +LE+IAELVR K I  IADLR
Sbjct: 239 FETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P +  L   L  
Sbjct: 299 DESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDC 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFRE+V++RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+  +AR  LM R
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ L++LIDD    I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G  I E L+I++SR R L +++ ELL+V+  +  PR T I + + D +DE  I    MVV
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL  +RAQ RGG+GR+   MR +D +T  F   TH  VLFFS  G  ++
Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  +P A+G+A++NIL    G+ +T ++P P+DES WN+L++VFAT  GNVRRN
Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +L+DF  +  +G IAMKLD  D ++ V TC + +D+ L T+  +C+RF I+    RVFAG
Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+S GVRGI L  GD+VIS++++ H +A  DER  Y+K+ +AQRR    + E      ++
Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++ +  ++ ER   L+  E+ ILTV+  GFGK +S+Y++R++ R G+GI    ++  N  
Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            A+ A FPV   D I+LV+D+G LIR PV+++RI  R   GV +    KDE+V SV  + 
Sbjct: 839 -AVAASFPVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVL 897

Query: 899 ESEIVDEAESTE 910
           +    +  E  +
Sbjct: 898 DDGGDEAGEEQD 909


>gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 907

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/899 (53%), Positives = 629/899 (69%), Gaps = 8/899 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K
Sbjct: 6   SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  
Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIE
Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT
Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R+H+L GLA+AV+N+DEVV  IR   +P  AR  LM R   ++DI D I L
Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRL 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD S+TI  DGT  LSE+Q RAIL+LRL+ LT +G  ++ +EL  L  +I++ LDIL S
Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL
Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A
Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++NIL +  G  I  +M     E  W+ L VVFAT  G+VRRN+LSDF  + R+GK
Sbjct: 606 KGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD
Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE-EITSLKNDSSVEGNISEERCQE 792
           +V+SM+++ H +AD  ER  Y+K     RRL++G T+      + D+   G +S  R  E
Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQ----RRLMAGVTQEAEADEEEDAVEAGQLSPTRYAE 781

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G LVA FPV  +DQ
Sbjct: 782 MSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQ 839

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAESTE 910
           ++L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI ++ E  D  E  E
Sbjct: 840 VMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGETADGVEDAE 898


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/892 (46%), Positives = 569/892 (63%), Gaps = 67/892 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI ++ LM  I GPDFPT A+I GR GI++AY TGRG I +R  
Sbjct: 186 NLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMINGRKGIEDAYRTGRGKIYLRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVVTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A A+VILN LY  T LQ+ F +NMVAL+  +P  F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVAEVILNNLYAQTQLQTSFGINMVALDNNQPRLFNLKDMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+DE++ +IR +  P  AR  L  R W+   +  +++ 
Sbjct: 366 IFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLEA 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I 
Sbjct: 426 TGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL +V+D     RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLINQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 546 GYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L Q ERIT I+P  E E   ++ +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNLLPLEQDERITAILPVKEYE---DDKFVFMATSDGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+    +ND++L +K G+ VRF  S +R    R + GVR
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +                                             
Sbjct: 722 GIKLAEGDKVVSLIV--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 737 --------PHNEGDVLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERN--GCVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V+   + +++++ GTL+R  V E+    R T+GV +  T++ ERVV ++RI
Sbjct: 787 QVDTGYEFMMITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVVGLQRI 838


>gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
          Length = 877

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/905 (46%), Positives = 579/905 (63%), Gaps = 41/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M   G ++NK Y K
Sbjct: 6   KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVD++PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A IDN  I +D LM  I GPDFPT A+I G+ GI+ AY TGRG I IR  
Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAIINGKRGIEEAYKTGRGKIYIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +++LN LY  T LQ  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEIVLNNLYALTQLQVTFGINIVALDHGQPKLLNLKELIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ + W   +++ ++  
Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAMLAA 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +              G  +LSE Q +AIL+LRL +LTGL  + I +E  SL   I 
Sbjct: 426 AGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLDVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S +RL+ +I++EL  +K + + PRRT I     D+  ED I  ED+VVT+SH 
Sbjct: 486 ELLHILHSPARLMEVIREELEKIKAQYNDPRRTEITASSGDINLEDLINPEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L + ERIT I+P  E      + ++V AT  G V++  L++F
Sbjct: 606 LPQASRGARGRPIVNLLPLEENERITAILPVKEYAE---DKFIVMATAGGLVKKTALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R    R + GVR
Sbjct: 663 SRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA           L  D   +E                 D EE  + + D S++ +I
Sbjct: 722 GIKLA-----------LTNDISDEE----------------NDNEESGNDETDQSLDLSI 754

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 755 DKVVSLVIPKTNGAILTATQNGYGKRTDLAEYPTKSRNTKGVISIKVSERN--GKVVAAA 812

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +NDQI+L++D GTL+R  V EI +  R T+GV +  T+  E+VVS+ER+ + +  ++
Sbjct: 813 QVEENDQIMLITDAGTLVRTRVAEISLVGRNTQGVRLIRTSDTEQVVSIERVCDDDEEND 872

Query: 906 AESTE 910
             + E
Sbjct: 873 TVAEE 877


>gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654]
          Length = 917

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/908 (53%), Positives = 642/908 (70%), Gaps = 17/908 (1%)

Query: 1   MTEHIISSD-------EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +     +       E       S++I  EM+NSYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPEPPENGGELPPERPTYSGPSITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M ++G   +K Y K +R   + MG+YHPHG+AAIYDALARM QD+S+ L L++G
Sbjct: 61  RRILYAMHEVGNTHDKPYRKSSRPVADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R++KAA  LL+D+ KDTVDF+ NYDG  +EP+VL AR+PN
Sbjct: 121 QGNFGSMDGDKPAAFRYTEVRMEKAAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PDI  + LMEII GPDFPTG VILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIESPDISDERLMEIIPGPDFPTGGVILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IVV E+P+QVNKA M+EKIA+LVR+K++
Sbjct: 241 RSGARKAYLEGRGSVILRAKTRVEEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKL 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+ +V+LNQL+R+T LQ+ F  NM+ALNG KPE+ T
Sbjct: 301 EGIAAIQDESDRLGVRVVIELKRDATPEVVLNQLFRFTQLQTSFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L+ F+ FREEVV RRT +LL KARDR+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRDFLRHFITFREEVVARRTAFLLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A DI D I L+DD ++T+  DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAEDIADYIRLVDDPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E LDIL SR R++ II  EL +VKDE   PRR+ IVE   DM+DED I
Sbjct: 481 TDELQELAGKIREYLDILRSRDRIMAIISDELTAVKDEFAVPRRSEIVEWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVT++  G+ KR PL+ YR Q+RGGKG SG+  +DED +T LF+ +THT +LFF+
Sbjct: 541 EREDMVVTITQSGWAKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP+G   +RGKA++NIL +  G  I  IMP   DE+ W++L +VFAT 
Sbjct: 601 TDGMAYKLKTWRLPLGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710
            G+VRRN+LSDF  + R+GKIAMK +  DE   +++   C + +D++L T  G+ +RFP+
Sbjct: 661 KGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICDENDDVMLVTNKGRAIRFPV 720

Query: 711 SAIRVFAGRNSVGVRGIS-LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             +RVF  RNS GVRGI  L K D+V+SM+++ H DA  +ER  Y+K     RR ++G  
Sbjct: 721 PDVRVFNSRNSTGVRGIRLLGKDDEVVSMSVIRHFDATSEERTAYLK----MRRQMAGAD 776

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           E   S   D +VEG I++ER +E++  E+ ILT++EKG GK +SS+D+ +  R G+G+ A
Sbjct: 777 ETDDSDDEDEAVEGAITQERFEEMQAAEELILTITEKGLGKLSSSHDYPVRGRGGQGVTA 836

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +K    G LVA FPV   DQ++L + KG  IR PVN I   SR   GV +F+T K E
Sbjct: 837 --FTKAMPGGDLVACFPVGMEDQVMLATSKGQSIRCPVNGISFRSRGAGGVKVFNTGKGE 894

Query: 890 RVVSVERI 897
            VVSV  I
Sbjct: 895 SVVSVAWI 902


>gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 889

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/885 (53%), Positives = 627/885 (70%), Gaps = 10/885 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SITDEM+NSYL YA++VI+ RAIPDLRDGLKPVHRRILF M ++G   +K Y K AR  
Sbjct: 1   MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 61  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A ++L D+ KDTVDF+ NYDG  +EP VL  R+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+IDNPD+ ++ L++ + GPDFPTG V+LGR+G + AY  GRGS +IR  +H+E+
Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLLGRSGARKAYTEGRGSCIIRAKTHVEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNK+AM+EKIAE VREK+I  I+ ++DESDR G RVV+ELKR A
Sbjct: 241 LRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LNQL+R+T +Q+ F  NM+ALNG +PE  TL G L  F++FREEVV RRT YLL 
Sbjct: 301 TPDVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLYGFLSNFISFREEVVARRTAYLLR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM R W A +I   I LIDD +
Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDDPT 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 421 HRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 480

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  VK+    PRRT IV+   DMEDED I R +MVVT++  GY+KR PL  YRA
Sbjct: 481 QIISDELREVKELFAVPRRTEIVDWSGDMEDEDLIERAEMVVTITQSGYIKRTPLEDYRA 540

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  +D+D VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA+
Sbjct: 541 QKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKAI 600

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP   DE  W +L +VFAT  G VRRN LSDF  +  +GKIAMK 
Sbjct: 601 VNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNVKSNGKIAMKF 660

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +E   +++   C  E+D++L T+ G+ +RF    +RVF  R+SVGVRG+ L + D+V
Sbjct: 661 EGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVRGVRLNEKDEV 720

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            SM ++    A+ DER  Y+K     RR ++GD E+ T+ + + + +  + ++R  E+  
Sbjct: 721 ASMFVLPTFPAESDERASYLK----MRRAMAGDVEQ-TTDEEEGNADMPLPQDRYAEMSA 775

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G G  +SS+D+ +  R G G+ A +  K    G ++A FPV  +DQ++L
Sbjct: 776 AETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWE--KTMRTGEIIAAFPVEMDDQVML 833

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + KG  IRVPV+ I   SR+  GV +F+T K E VVSV RI E 
Sbjct: 834 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGETVVSVARIAEQ 878


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/906 (45%), Positives = 576/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA++N+D ++ +IR +PNP  A+  L+ R W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL S  RL+ +I++EL++V+D+    RRT I E   D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L   ERIT I+P  E E      +V  AT  G V++  L+D
Sbjct: 606 QLPEASRGARGRPIINLLPLEANERITAILPVREYEE---GRHVFMATASGTVKKTALTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+ I                                            
Sbjct: 722 RGINLNGEDRVVSLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGEGDILTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERN--GNVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVDACDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 EAESTE 910
           E    E
Sbjct: 847 EVLDGE 852



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 169/461 (36%), Gaps = 44/461 (9%)

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS- 407
               T            +++     + LL++ ++    +  L   + + D ++ +IR   
Sbjct: 447 HYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAALIFILESPDRLMEVIREEL 506

Query: 408 ----PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
                    ARR  +  +    +I+DLI   D     + +       + Q     E +  
Sbjct: 507 IAVRDQFGDARRTEITENTADINIEDLISQED----VVVTLSHQGYVKYQPLTDYEAQRR 562

Query: 464 RLTGLGRDDIRNE--LNSLG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
              G     I+ E  ++ L      + +   SSR RL      ++  + +     R   I
Sbjct: 563 GGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY---WMKVYQLPEASRGARGRPI 619

Query: 521 V--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           +        E +  +           V   +  G VK+  L+ +   R    G   V + 
Sbjct: 620 INLLPLEANERITAILPVREYEEGRHVFMATASGTVKKTALTDFSRPRSA--GIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + +      V+ FS+ G V +    ++      A G   +  ++LN  +R+ +
Sbjct: 678 EGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSMGRTATG---VRGINLNGEDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E       ++  T++G  +R  ++++   +R+  G I++K+      ++    
Sbjct: 735 LI-IPRGEGD-----ILTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERNGNVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V   + D +
Sbjct: 789 VDACDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                      +   + GD  ++    ND+  +    +E  
Sbjct: 848 VLD------GEEGAAVEGDVADVAEDANDAPEQDEEGDENA 882


>gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
 gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
          Length = 918

 Score =  863 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/920 (52%), Positives = 629/920 (68%), Gaps = 18/920 (1%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + ++E           SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENDDEIPATRPVYDGPSVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+   K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+G
Sbjct: 61  RRIIYSMYEKGITHEKAYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A F+  DL K+TVDF  NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSAAAMRYTESRLDKVASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IV+ EI YQVNK+ M+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 DGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRKFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A  I   I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+IL SR R++GII  EL  VKD+   PRRT IV+   DM+DED I
Sbjct: 481 TDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  ++ED VT LF+ +THT +LFF+
Sbjct: 541 AREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP G   ++GKA++NIL +  G  I  IMP   DE  W++L VVFAT 
Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R SVGVRGI L   D+V+SM+I+ H DA  +ER  Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRASVGVRGIKLNGDDEVVSMSIIRHFDASSEERTAYLK----MRRAMAGLAD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +    ++++  + N S+ER  E+   E  +LT++EKG GK +SS+D+ +  R G G+ A 
Sbjct: 777 DAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAM 836

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F T + E 
Sbjct: 837 D--KAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEV 894

Query: 891 VVSVERIRESEIVDEAESTE 910
           VVSV  I +    DE    E
Sbjct: 895 VVSVAWIADQG--DETGDDE 912


>gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
 gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
          Length = 899

 Score =  863 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/906 (53%), Positives = 629/906 (69%), Gaps = 10/906 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E       SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MDE---TPPERPAYSGPSVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HESGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A +LL D+ K+TV+F+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 118 DGDNAAAMRYTEVRMDKPAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD  +A+IDNPD++ + L++ I GPDFPTG ++LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVVDATLALIDNPDLESEDLIQYIPGPDFPTGGLMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS++IR  +  E+   DR  I++ EIPYQVNKA M+E+IAE  R+KRI  IA ++
Sbjct: 238 YLEGRGSVIIRAKTRTEEIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR A+A+V+LNQLYR+T +Q+ F  NM+ALNG KPE+ TL   L  
Sbjct: 298 DESDRNGVRVVIELKRDATAEVVLNQLYRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSL 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRT Y L KAR+RAHVL GLA+AV+N+DEVV  IR S +   AR++LM+R
Sbjct: 358 FITFREEVVARRTAYDLRKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMER 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI   I LIDD S+   +DGT  LSEVQ RAIL+LRL RLT LG  ++ +EL  L
Sbjct: 418 RWPAGDILPYIALIDDPSHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L IL+SR R++ II  EL  V++    PRRT IV+   DMEDED I REDMVV
Sbjct: 478 AGKIKEYLAILASRERIMQIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  L+ +RAQ+RGGKG SG+  +DED VT LF+ +THT +LFF++ G VYK
Sbjct: 538 TVTSGGYIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP+G   ++GKA++NIL +  G  I  IMP    E  W +L +VFAT  G+VRRN
Sbjct: 598 LKTWRLPLGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  + R+GKIAM L    E+++   C  E+D++L T  G+ +RFP + +RVF GR 
Sbjct: 658 ALSDFTNVMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRK 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI L   D+V+SM+++ H DA  D+R  Y+K     RR ++G  ++ TS  ++ +
Sbjct: 718 STGVRGIRLLGDDRVVSMSVIRHFDASADDRAAYLK----MRRQLAGAEDDGTS-DDEGN 772

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            +  +S E+  E++  E  ILT++ +G GK +SS+D+ +  R G G++A D  K    G 
Sbjct: 773 ADAALSAEQFAEMQAAENLILTITARGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGT 830

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA FPV   DQI+L + KG  IRVPV  I   SR+  GV +F+T   E VVSV  I E 
Sbjct: 831 VVASFPVTLEDQIMLATSKGQSIRVPVMGISFRSRSAGGVKVFNTGAGEEVVSVAWIAEQ 890

Query: 901 EIVDEA 906
              DE 
Sbjct: 891 AEEDET 896


>gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 923

 Score =  863 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/896 (56%), Positives = 644/896 (71%), Gaps = 9/896 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G   +K Y K A + 
Sbjct: 14  VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG+YHPHG++AIYDALARMAQ +S+ L L++GQGNFGS+DGDPPAA RYTE R+   
Sbjct: 74  GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTV+FR NYDGS QEPVVL ARYPN+LVNG GGIAVGMATNIP HNL EV
Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  VA++D PDI    L+E +  PDFPTG  I+GR+G + A   GRGS+++R  + IE 
Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKALLEGRGSVILRAKTSIED 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               RE I+V EIPYQVNKA M+EKIAELVR+KRI  I+DLRDESDR G RVVIELK+ A
Sbjct: 254 IRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIELKKDA 313

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+VILNQLYR++ LQ+ F VNM+AL G +P++  L   L+ F+  R+EVVVRRTK+ L 
Sbjct: 314 NAEVILNQLYRWSPLQTSFGVNMLALIGGRPQQAGLRVFLETFIHHRKEVVVRRTKFDLR 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDRAHVL+GLA+AVAN+DE++ +IR +P+P+TAR++L  ++W A D+  L++L+ D  
Sbjct: 374 KARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVELVADPR 433

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             I  DG + L+E Q +AIL+LRL RLT LGRD+I +E N L   I + LDIL S +R+ 
Sbjct: 434 SQI-RDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRSPTRIR 492

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+ ELL  K      RR+ I+EG L +EDED I REDMVVT++H GYVKR  LS YRA
Sbjct: 493 DIIRNELLDSKASFGVERRSAIIEGDLGIEDEDLIPREDMVVTLTHGGYVKRTALSTYRA 552

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGGKGR+G+ M+DEDFV  LF+ STH  +LFFSS G VYK K WRLP+G+P  +GK L
Sbjct: 553 QNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWRLPLGAPNTKGKYL 612

Query: 619 INILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            N+L  LN G  IT++M  PEDE SW+   V+FAT  G VRRNKLSDF+Q+NR+GKIAMK
Sbjct: 613 TNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRRNKLSDFVQVNRNGKIAMK 672

Query: 678 LD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           LD    +IL V  C ++ D+LL +  G+ +RFP+  +RVFA RNS GVRGI L + D++I
Sbjct: 673 LDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFASRNSTGVRGIRLKENDRLI 732

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG---NISEERCQEL 793
           SMAI+ H D   DE   YM+H +A RR    + ++      +    G    +S ER  EL
Sbjct: 733 SMAILNHIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVALSPERIAEL 792

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E+F+LTV++ G GKR+S+YD+R+  R  +G+ A D+SK+ E   L A FPV D D +
Sbjct: 793 GAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKVKE---LAACFPVIDGDTV 849

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + V+D G LIR PV+ +RIA+RATKGV +   A+ E+VVSV RI ESE    AE  
Sbjct: 850 MAVTDGGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVVSVVRIAESEDDASAEED 905



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 7/255 (2%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577
           ++ E    + D      +  V+ VS  G   R P+   R    R   G  G+ +++ D +
Sbjct: 672 KLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFASRNSTGVRGIRLKENDRL 731

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             + I++    +   +     Y      +   +      A+++     +      + P  
Sbjct: 732 ISMAILN---HIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVALSPER 788

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQEND 695
             E      +V+   + G  +R+   D+  + R   G  A  +    E+ +       + 
Sbjct: 789 IAELGAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKVKELAACFPVIDGDT 848

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++  T  GQ +RFP+  +R+ A R + GVR I LA+G++V+S+  +  ++ D        
Sbjct: 849 VMAVTDGGQLIRFPVDTVRI-AARATKGVRLIRLAEGEKVVSVVRIAESEDDASAEEDGG 907

Query: 756 KHMSAQRRLISGDTE 770
           +   A     + + E
Sbjct: 908 EAGDAPNTPDAPEDE 922


>gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11]
 gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11]
          Length = 913

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/912 (53%), Positives = 641/912 (70%), Gaps = 12/912 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E  +    +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 11  MDE---NKPERPQYDGPTVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 67

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 68  HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 127

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 128 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 187

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+E I GPDFPTG V+LGR+G + A
Sbjct: 188 GIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLGRSGARKA 247

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS++IR  + +E+   DR  IVV EIPYQVNKAAM+EKIAE VREKRI  +A ++
Sbjct: 248 YLEGRGSVIIRAKTKVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQ 307

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +
Sbjct: 308 DESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLSS 367

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 368 FIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 427

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W ASDI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L
Sbjct: 428 RWPASDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 487

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L+ILSSR R+LGII  EL  V+D    PRRT IV+   DMEDED I REDMVV
Sbjct: 488 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 547

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK
Sbjct: 548 TITSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 607

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP G   ++GKA++NIL +  G  I  IMP    +  W  L V+FAT  G+VRRN
Sbjct: 608 LKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATSAGDVRRN 667

Query: 661 KLSDFIQINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +LSDF  + R+GKIAMKL      ++++   C++++D++L T  G+ +RF  + +RVF  
Sbjct: 668 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFRTTDVRVFNS 727

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRGI L   D V+SM+++ H +A  +ER  Y+K     RR ++G  ++  S   D
Sbjct: 728 RESTGVRGIRLNGDDHVVSMSVIRHFEASPEERAAYLK----MRRAVAGIADDGESDDED 783

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V G IS++R  E+   E  ILT++  G GK +SS+D+ +  R G G+ A D  K    
Sbjct: 784 -VVAGAISQDRYAEMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRG 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           GA+VA FPV  +DQI+L + KG  IRVP++ I   SR+  GV +F+T K E VVSV  I 
Sbjct: 841 GAIVASFPVEMDDQIMLATSKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEVVSVAWIA 900

Query: 899 ESEIVDEAESTE 910
           E    DEA+++E
Sbjct: 901 EQSDEDEADTSE 912


>gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3]
 gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 891

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/880 (53%), Positives = 620/880 (70%), Gaps = 3/880 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 5   VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 65  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A FLL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+ID+PD+  + L++ + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E+
Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I+V EIPYQVNKA M+EKIAE VREKRI  +A ++DESDR G RVV+ELKR A
Sbjct: 245 LRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRDA 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L  F+ FREEVV RRT + L 
Sbjct: 305 TPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAHDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR +LM R W A+DI   + LIDD  
Sbjct: 365 KARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDDPL 424

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             +  DGT  L+EVQ RAIL+LRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 425 SKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRERIM 484

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           GII  EL  V+++   PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +RA
Sbjct: 485 GIIADELREVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRA 544

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA+
Sbjct: 545 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 604

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP    +  W+ L +VFAT  G+VRRN LSDF  + R+GKIAMKL
Sbjct: 605 VNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMKL 664

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               E+++   C++E+D++L T  G+ +RFP + +RVF GR+S GVRGI L  GD+V+SM
Sbjct: 665 PEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVSM 724

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           +++ H +A+  ER  ++K           + +   + ++    EG +++ER QE++  + 
Sbjct: 725 SVIRHFEAEPWERAEFIKRFRTI-LGAEMEDDAAETDEDAVEGEGVLTDERYQEMQDAQD 783

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILT++  G GK +SS+D+ +  R G+G++A   S     G L A FPV  +DQI+L + 
Sbjct: 784 LILTITVTGLGKLSSSHDYPVRGRGGQGVKAI--SAGPRGGTLAASFPVLMDDQIMLATS 841

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            G  IRVPV  I   SR+  GV +F+T+K E VVSV RI 
Sbjct: 842 GGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARIA 881


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/906 (45%), Positives = 576/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 9   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 69  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 128

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 129 RMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMATNIPPH 188

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 189 NLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRAR 248

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VI
Sbjct: 249 AEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVI 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 309 EVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRR 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++
Sbjct: 369 TIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWELGNVASMLE 428

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 429 RAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLI 488

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++ELL++K + +  RRT + E   D+  ED I +ED+VVT+SH
Sbjct: 489 GELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADINIEDLINQEDVVVTLSH 548

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 549 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDTILCFSSRGRLYWMKVY 608

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L Q ERIT I+P  E E   + LYV  AT  G V++  L D
Sbjct: 609 QLPEASRSARGRPIINLLPLEQDERITAILPVREYE---DGLYVFMATASGTVKKTALQD 665

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G +A+ L+  DE++ V+     N+++L +  G+ VRF   A+R    R + GV
Sbjct: 666 FSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEEDAVRAMG-RTATGV 724

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D+V+S+                                              
Sbjct: 725 RGIKLNGKDKVVSLI--------------------------------------------- 739

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV+E G+GKRT+  ++ I +R+ +G+ +  VS+ N  G +V  
Sbjct: 740 --------IPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIKVSERN--GNVVGA 789

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E E  +
Sbjct: 790 IQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAEPEDDE 849

Query: 905 EAESTE 910
           +    E
Sbjct: 850 DELVAE 855


>gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
 gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
          Length = 907

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/914 (52%), Positives = 618/914 (67%), Gaps = 15/914 (1%)

Query: 1   MTEHIISSDEEEEKGITS--------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           MT+H    D E    I          VSI+ EM+ +YL YA++VI+ RAIPDLRDGLKPV
Sbjct: 1   MTDH--PEDTETPSEIPERPVFHGPQVSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPV 58

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+LF M + G   +K Y K AR  G+ MGKYHPHG+A+IYDAL RMAQ +S+ L L++
Sbjct: 59  HRRVLFAMHETGNTSDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLD 118

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+P
Sbjct: 119 GQGNFGSMDGDGAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFP 178

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG  GIAVGMAT IP HNLGEV+DG +A+I NPD+  +ALMEII  PDFPTGA IL
Sbjct: 179 NMLVNGAEGIAVGMATRIPPHNLGEVIDGTLALIANPDLSTEALMEIIPAPDFPTGATIL 238

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+G + AY  GRGSI++R  + IE+   DR  I++ EIPYQVNKA M+E IAE VREK+
Sbjct: 239 GRSGARKAYLEGRGSIIVRAKTRIEEIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKK 298

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  IA ++DESDR G RVVIELKR A+ADV+LNQLYR+T +Q  F+ NM+ALNG +PE+ 
Sbjct: 299 IEGIAHVQDESDRIGVRVVIELKRDATADVVLNQLYRFTPMQISFACNMLALNGGRPEQL 358

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L   L  F+ FREEVV RRT + L KAR+R+H+L GLA+AVAN+DEVV  IR S +P  
Sbjct: 359 ALRDFLTHFITFREEVVARRTAFELRKARERSHILCGLAVAVANVDEVVATIRSSADPAE 418

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM R W A +I   I LIDD ++ +  DGT  LSE+Q RAIL+LRL RLT +G  +
Sbjct: 419 ARERLMTRRWPAGEIIPFIKLIDDPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKE 478

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +EL  L  +I++ L+IL SR R++ II  EL  ++     PRRT IV+   DMEDED 
Sbjct: 479 ITDELLDLAGKIRDYLEILGSRDRIMAIISTELAEMRALFAVPRRTEIVDWSGDMEDEDL 538

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVT++  GY+KR PL+ +R+Q RGGKG + +  +++D VT LF+ +THT +LFF
Sbjct: 539 IEREDMVVTITSGGYIKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFF 598

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VYK K WRLP+   QA+GKA++NIL + QG  I  +MP    E  W +L +VFAT
Sbjct: 599 TTDGMVYKLKTWRLPLAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFAT 658

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G+VR+N LSDF  + R+GKIAMKL     +++     + +D++L T  G+ +RFP + 
Sbjct: 659 SDGDVRQNDLSDFTNVMRNGKIAMKLPEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTE 718

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IRVF  R S GVRGI L   D+V+SMAI+ H +AD  ER  Y+K        +  +TE  
Sbjct: 719 IRVFKSRGSTGVRGIRLGAEDRVVSMAIIRHFEADPAEREAYLKQRRLMAGAVDDETEAD 778

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                 +   G +S ER  E+   E  ILT++  G GK TSS+D+ +  R G G++A D 
Sbjct: 779 EDEV--AVAAGQLSTERYAEMSAAEDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMDG 836

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +     G LVA FPV  +DQI+L +  G  IRVPV +I   SR+  GV +F+T  DE+VV
Sbjct: 837 AMRG--GPLVASFPVEMSDQIMLATSTGQSIRVPVAQISFRSRSAGGVKVFNTGGDEQVV 894

Query: 893 SVERIRESEIVDEA 906
           SV R+ E    DEA
Sbjct: 895 SVARVAEQ-GDDEA 907


>gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601]
          Length = 905

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/908 (53%), Positives = 632/908 (69%), Gaps = 7/908 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E    G  ++SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G 
Sbjct: 1   MSGPERPSYGGPAISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQ 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y KCA   G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPP
Sbjct: 61  TKSKPYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL++ A  LL+D+ KDTVDF PNY     EPVVL ARYPNVLVNG  GIAVG
Sbjct: 121 AAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT IP HNLGEV+D  +A+I+NPD+  + L+E I  PDFPTG VILGR+G + AY  GR
Sbjct: 181 MATRIPPHNLGEVIDATLALIENPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS++IR  + IE+   DR  IV+ EIPYQVNKA M+E+IAE VR+K+I  IA ++DESDR
Sbjct: 241 GSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELKR A+A+V+LNQLYR+T +Q  F  NM+ALNG KPE+ TL   L AF+ FR
Sbjct: 301 SGVRVVIELKRDATAEVVLNQLYRFTPMQVSFGCNMLALNGGKPEQLTLRTFLTAFLDFR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT YLL KAR+R+H+L GLA+AVAN+DEVV  IR S +   AR +LM R W A 
Sbjct: 361 EDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAH 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           +I   I LIDD ++ +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IK
Sbjct: 421 EIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIK 480

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L+IL SR R++ II  E+ +V+D+   PRRT IV+   DM+DED I REDMVVTV+  
Sbjct: 481 EYLEILGSRERIMEIISNEMTAVRDQFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTQS 540

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR PL+ YR+Q+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WR
Sbjct: 541 GYIKRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWR 600

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G   ++GKA++NIL + QG  +  IMP    E  W++L +VFAT  G+VRRN+LSDF
Sbjct: 601 LPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDF 660

Query: 666 IQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             + R+GKIAMK +  DE   +++   C++++D++L T  G+ +RFP+  +RVF  RNS 
Sbjct: 661 TNVMRNGKIAMKFEGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNST 720

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ LA GD+V+SM+++ H +A+ DER  Y+K   A   L           + +   +
Sbjct: 721 GVRGVKLANGDEVVSMSVIRHFEAESDERASYLKMRRAMAGLADDAEAASDDDEGN--AD 778

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S ER  E+   E  +LT++ KG GK +SS+D+ I  R G G+ A + S     G +V
Sbjct: 779 SLLSAERYAEMSAAENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRG--GEIV 836

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A FPV   DQI+L +  G  IRVPV  I   SR+  GV +F+T + E VVSV  I +   
Sbjct: 837 ASFPVEMEDQIMLATSTGQSIRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQGD 896

Query: 903 VDEAESTE 910
            DE E+ E
Sbjct: 897 EDEGEAGE 904


>gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
 gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A
 gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
          Length = 906

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/900 (51%), Positives = 639/900 (71%), Gaps = 15/900 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   S        +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M
Sbjct: 1   MTDQNFS-------NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+
Sbjct: 54  YEAGNHASKPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSM 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG G
Sbjct: 114 DGDAAAAMRYTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSG 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++A
Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLR
Sbjct: 234 YLTGRGSIIMRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+ IELK+    +V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ A
Sbjct: 294 DESNKNGVRIFIELKKDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE V+  RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S NP  A++ELM R
Sbjct: 354 FVSFREVVITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMAR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW+A +I  L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L
Sbjct: 414 SWDALNILPLVKLVDDKA-MLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI E L+IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVV
Sbjct: 473 ATEITEYLNILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KRVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY 
Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K+++LP+ +PQ +G+ ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF +I  +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R 
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRT 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRG+ LAK D VISM ++    +  ++R  Y+     +R  I+   E      N   
Sbjct: 713 SDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEE-----FNLEE 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +   ++ +   E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G 
Sbjct: 768 LGVTLTADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGL 825

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V V PV  +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
 gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
          Length = 908

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/914 (50%), Positives = 611/914 (66%), Gaps = 24/914 (2%)

Query: 1   MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++            E     + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 1   MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   + G    K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF
Sbjct: 61  WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D DPPA+ RYTE RL K A  LL D+ KDTVDF+PNYDG+  EP VL AR+PN+LVN
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGEV+D C+A +DNP + +D L++II GPDFPT  +ILG  G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGTAGA 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY  GRGSI++R    IE+  GDR  IV+T IPYQV K+ ++EKIAE  ++KRI  I+
Sbjct: 241 RKAYHEGRGSIIMRARHQIEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDES+R+G RVVI+LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   L  I
Sbjct: 301 DIRDESNREGVRVVIDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEVLNLKDI 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +++FV FREEV+ RRTK+ LNKARDRAH+L+GL IAV NLDEVVRIIR SPNP  AR  L
Sbjct: 361 IESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARETL 420

Query: 418 MQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           + R W   +I   I L++      +    T  LSE+Q RAIL+LRL RLT LGRD+I +E
Sbjct: 421 LAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDEIGDE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L   I E L IL+ R +L G+++QELL V+    TPR++ I      +EDED I RE
Sbjct: 481 LEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRKSEITAPADGIEDEDLIERE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVT++  GY+KR PLS +RAQ RGGKGRSG+  +DED V  +F+ STHT VLFFS+ G
Sbjct: 541 DMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTSTHTPVLFFSTAG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            VY+ KVWRLP G P  RG+ ++N+L  L++ E I T++P PEDE+ W  L VVFAT  G
Sbjct: 601 KVYRLKVWRLPEGGPTTRGRPVVNMLPALDKDETIATVLPLPEDEAEWGKLSVVFATAKG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           NVRRN +  F  I  +GK AMK +    D ++ V      +D+LL T+ G+ +RF    +
Sbjct: 661 NVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKAIRFAGDEV 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R F  R S GVRG++L   D+VIS++I+       DER  Y++                 
Sbjct: 721 REFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPW------------- 767

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             K +   E  +S ER  EL+ +EQFILTV   G+GK +S+Y++R + R G+GI  T++ 
Sbjct: 768 --KGEKEGEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNID 823

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            I   G +VA FP    DQ++LV+D+  LIR+P++ +R+  R + GV +F+ +  E VVS
Sbjct: 824 NIGRNGPVVASFPATQADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVSGGEHVVS 883

Query: 894 VERIRESEIVDEAE 907
             R+ E E  +  +
Sbjct: 884 AVRLAEEEGAESDD 897


>gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 913

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/888 (55%), Positives = 648/888 (72%), Gaps = 5/888 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KC
Sbjct: 5   DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+G++HPHG+A++Y AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE +
Sbjct: 65  ARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  AA  LL D+ KDTVDF+PNYD    EPVVL AR PN+LVNG GGIAVGMATNIP HN
Sbjct: 125 MAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  VA++D+PD+  DAL++I+ GPDFPTG  I+GRT  +NA   GRGS+++RG +
Sbjct: 185 LREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+   DR+ I++TE+P+QVNK  ++E+IAE+VREKR+  IAD+RDESDR G R+VIEL
Sbjct: 245 SIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR AS DVILNQLYRYT+LQS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR K
Sbjct: 305 KRDASGDVILNQLYRYTALQSSFGVNMLALNHGRPEQMGLRKLLELFLDFREEVVVRRVK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  ++W   D+  L++LI
Sbjct: 365 FELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALVELI 424

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D    +     + L++ Q RAIL L L+RLTGLGRDDI  E  +L   I+  L ILS R
Sbjct: 425 ADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTILSDR 484

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L II+++LL VKD+    RRT I EG  +MEDED I REDMVVTV+H GYVKRV L+
Sbjct: 485 KNVLAIIREDLLLVKDQFGVDRRTLIGEGDAEMEDEDLIPREDMVVTVTHSGYVKRVALN 544

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKGRSG+ M+DED VT +F  STHT VLFF++ G  YK K WRLP+G+PQ+R
Sbjct: 545 AYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSR 604

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA +N+L +  G+ I  ++P PEDE++W +  ++FAT+ G+VRRNKLSDF  +NR+GKI
Sbjct: 605 GKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRNKLSDFATVNRAGKI 664

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL+  D ++ V  CT E+D+LLTT LG+ +RF    +RVF GR+S GVRGI L  GD 
Sbjct: 665 AMKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGIRLQDGDT 724

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNISEERC 790
           VISMAI+   DA  +ER  Y+KH +A R+ ++G   E         ++ + +  +S ER 
Sbjct: 725 VISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEADDEEAGDAALSVERI 784

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +        L A FPV ++
Sbjct: 785 AELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGT-RLAAAFPVEES 843

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D ++LV+D G +IR PV+++RI  R+++GV IF T KDE+VVSVER+ 
Sbjct: 844 DDLMLVTDGGQMIRTPVSQVRIVGRSSQGVTIFRTGKDEKVVSVERLA 891


>gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003]
          Length = 883

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/886 (52%), Positives = 621/886 (70%), Gaps = 5/886 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G   +K Y K AR  G+VMGK
Sbjct: 1   MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K A FLL 
Sbjct: 61  YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D  +A
Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD+  +ALM+ + GPDFPTGA I+GR G + AY  GRGS++IR  + IE+   DR 
Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEEIRKDRF 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++ EIPYQVNKA M+EK+A+LVREK++  IA + DESDR G RVVIELKR A+ADV+L
Sbjct: 241 AIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+AFREEVV RRT Y L KAR+R+
Sbjct: 301 NQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARERS 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GLA+AV+N+DEVV  IR S +P  AR  LM+R W A +I + + LIDD  + +  D
Sbjct: 361 HILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSEVQ RAIL+LRL RLT +G  ++ +EL  L  +I++ L IL+SR R++ II  E
Sbjct: 421 GTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  V+     PRRT IV+   D++DED I REDMVVT++  GY+KR PL+ +RAQRRGGK
Sbjct: 481 LREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+    ++GKA++NIL +
Sbjct: 541 GLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAIVNILPI 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QG  + ++MP  E E +W++  V FAT  G+VRRN LSDF ++ ++GK AM+L     +
Sbjct: 601 PQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMELPEGVTL 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +    C +E+DI+L T  G+ +RFP+  +R+F GR+S GVRG+ LA+GD+V+SM+++ H 
Sbjct: 661 VDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSMSVIRHF 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNISEERCQELKLKEQFILT 802
           +A+  ER  ++K   A+    + D  E      D +   EG +S+ R  E+   +  ILT
Sbjct: 721 EAEPWERDAFVKRYRAELGGETEDEAETDRDAEDEAEGGEGVLSDARYAEMLAAQDLILT 780

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++ KG GK +SS+ + +  R G+G+ A + S     GALVA FPV   DQ++L +  G  
Sbjct: 781 ITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRG--GALVASFPVEPTDQVMLATSTGQS 838

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           IR PV  I   SRA  GV +F+T  +E VVSV R+ +    DEAE+
Sbjct: 839 IRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADP-GDDEAEA 883


>gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217]
 gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217]
          Length = 899

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/910 (53%), Positives = 629/910 (69%), Gaps = 12/910 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E       SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MDE---TPPERPSYSGPSVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEGGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A +LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 118 DGDNAAAMRYTEVRMDKPAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD  +A+I+NPD++ + L++ I GPDFPTG ++LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVVDATLALIENPDLESEDLIQYIPGPDFPTGGLMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS++IR  + +E+   DR  I++ EIPYQVNKA M+E+IAE  REKRI  I+ ++
Sbjct: 238 YLEGRGSVIIRAKTRVEEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ TL   L  
Sbjct: 298 DESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSL 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRT + L +AR+RAHVL GLA+AV+N+DEVV  IR S +   AR +LM+R
Sbjct: 358 FIVFREEVVARRTAFELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMER 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A +I   I LIDD S+    DGT  LSEVQ RAIL+LRL RLT LG  ++ +EL  L
Sbjct: 418 RWPAREILPYIALIDDPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L IL+SR R++ II  EL  V+D    PRRT+IV+   DMEDED I REDMVV
Sbjct: 478 AGKIKEYLAILASRERIMQIISDELREVRDLFAVPRRTQIVDWSGDMEDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  L+ +RAQ+RGGKG SG+  +DED VT LF+ +THT +LFF++ G VYK
Sbjct: 538 TVTSGGYIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP+G   ++GKA++NIL +  G  I  IMP    E  W +L +VFAT  G+VRRN
Sbjct: 598 LKTWRLPLGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  + R+GKIAM L    E+++   C  E+D++L T  G+ +RFP + +RVF GR 
Sbjct: 658 ALSDFTNVMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRK 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI L   D+V+SM+++ H DA  DER  Y+K      R      +E  +  ++ +
Sbjct: 718 STGVRGIRLLGNDRVVSMSVISHFDASADERAAYLKM-----RRQLAGADEDAAADDEGN 772

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            +  IS ER +E++L E  ILT++ KG GK +SS+D+ +  R G G++A D  K    G 
Sbjct: 773 ADAAISPERFEEMQLAENLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGT 830

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA FPV   DQI+L + KG  IRVPV  I   SR+  GV +F+T   E VVSV  I E 
Sbjct: 831 VVASFPVTLEDQIMLATSKGQSIRVPVMGISFRSRSAGGVKVFNTGTGEEVVSVAWIAEQ 890

Query: 901 EIVDEAESTE 910
              DE E+ E
Sbjct: 891 --ADEDETAE 898


>gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
          Length = 901

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/882 (53%), Positives = 620/882 (70%), Gaps = 8/882 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 16  VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+I++PD+  + L+E I GPDFPTGA++LGR+G + AY  GRGS++IR  + +E+
Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGALMLGRSGARKAYLEGRGSVIIRAKTRVEE 255

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IVV EIPYQVNKAAM+EKIAE VREK+I  +A ++DESDR G RVV+ELKR A
Sbjct: 256 IRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRDA 315

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT +LL 
Sbjct: 316 TPEVVLNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAHLLR 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV N+DE+V  IR S +   AR +LM R W A  I + I LIDD +
Sbjct: 376 KARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDDPT 435

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IK+ L+ILSSR R++
Sbjct: 436 HTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRERIM 495

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           GII  EL  V+D    PRRT IV+   DMEDED I REDMVVTV+  G++KR PL+ +RA
Sbjct: 496 GIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGWIKRTPLADFRA 555

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA+
Sbjct: 556 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 615

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN+LSDF  + R+GKIAMKL
Sbjct: 616 VNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNVRRNGKIAMKL 675

Query: 679 DSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                 ++++V  C++++D++L T  G+ +RF  + +RVF  R S GVRGI L   D V+
Sbjct: 676 PEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRGIRLTGEDSVV 735

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM+++ H+    ++R  Y+K     RR ++G T++  +   D+  + N S E   E+   
Sbjct: 736 SMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEASDEDAPEDPNFSTELYAEMSAA 791

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L 
Sbjct: 792 ENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGEIVASFPVELDDQIMLA 849

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + KG  IRVPV+ I   SR+  GV +F+T K E VVSV  I 
Sbjct: 850 TSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIA 891


>gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
 gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A
 gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
          Length = 905

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/900 (51%), Positives = 634/900 (70%), Gaps = 15/900 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT++  S        +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M
Sbjct: 1   MTDNNSS-------NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   N+ Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+
Sbjct: 54  HEAGNHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG G
Sbjct: 114 DGDAAAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSG 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C   +DN DI++  L+E+++GPDFPT  +ILG  GIK+A
Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI IRG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLR
Sbjct: 234 YLTGRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+ IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ A
Sbjct: 294 DESNKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE V+  RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +P  A++ELM R
Sbjct: 354 FVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMAR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW+A +I  L+ L+DD +  +  +G    +E Q +AILE+RL RLT + ++ +  +L +L
Sbjct: 414 SWDALNILPLVKLVDDKA-MLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI E L+IL SR RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVV
Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KRVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY 
Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K+++LP+ +PQ +G+ ++NIL L   E IT IMP PE++  W+NL ++FAT  GN+RR+
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF +I  +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R 
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRG+ LA+ D VISM ++    A  +ER  Y+     +R  I+   E      N   
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEE-----FNSEE 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +  +++ E   E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G 
Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGL 825

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V V PV  +D+++L+++ G LIR  +  +RI  R T GV +F     E+VVS   I ES
Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885


>gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
 gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
          Length = 918

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/920 (51%), Positives = 638/920 (69%), Gaps = 18/920 (1%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + +  EE            +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENTEEMPPERPVYDGPQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDALARMAQD+S+ L L++G
Sbjct: 61  RRILYAMYEAGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A ++L D+ KDTVDF+ NYDG  +EP VL +R+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C+ +I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RTG + AY  GRGS++ R  +H E+   DR  I++TEIPYQVNK+ M+++IAE  R+K+I
Sbjct: 241 RTGARKAYLEGRGSVITRAKTHTEEIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+ ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE  T
Sbjct: 301 EGISHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV+RRT + LNKARDRAHVL GLA+AV+N+DEVV  IR S +  +A
Sbjct: 361 LRRFLTSFLDFREDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM R+W A++I   I LIDD ++   +DGT  LSE+Q RAILELRL RLT +G  ++
Sbjct: 421 RAALMTRAWPAAEILPFILLIDDPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L IL+SR R++ II  EL   K     PRRT+IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLAILASRERIMQIITDELAECKTLFAVPRRTQIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVTV+  GY+KR  L  +RAQ+RGGKG SG  ++++D VT LF+ +THT +LFF+
Sbjct: 541 ESQDMVVTVTETGYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP GS  ++GKA++NIL +  G  I  IMP   DE  W++L +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF ++ R+GKIAMK    +   ++++   C+ ++D++L T  G+ +RF  
Sbjct: 661 AGTVRRNKLSDFTKVMRNGKIAMKFEGENEGVQLINARICSDDDDVMLVTNSGRAIRFAS 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R S+GVRGI L   D+++SM+++ H +A+ DER  Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRASLGVRGIRLKGDDKIVSMSVIRHFEAESDERAAYLK----MRRAMAGLAD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +      D +  GNI++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+ A 
Sbjct: 777 DAEIEDEDVTA-GNITQERYAEMSASENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAM 835

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F+T K+E 
Sbjct: 836 D--KAMRGGEIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEI 893

Query: 891 VVSVERIRESEIVD-EAEST 909
           VVSV  I +    D +A+ T
Sbjct: 894 VVSVAYIADRADEDGDADET 913


>gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
 gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
          Length = 916

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/907 (51%), Positives = 627/907 (69%), Gaps = 23/907 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    +   E   I+++SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+  
Sbjct: 1   MADETTLA---EPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G    K Y K ARI G+VMGKYHPHG++AIYDALARMAQDWS+R+ LI+GQGNFGS+
Sbjct: 58  AESGFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K A+ LLDDL KDTVDF+PNYDGS +EP VL A+YPN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVV+ C+A ++N  I ++ L EI+  PDFPTGA+ILGR+G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALILGRSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR  IV+TEIPYQ  K A++EKIAE  +EKRI  I+D+R
Sbjct: 238 YQTGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VI+LKR A+ +V+LNQL+R+T  Q+ F  NM+A+ G +PE   L  I++A
Sbjct: 298 DESNREGVRIVIDLKRDATPEVVLNQLWRHTPAQTSFPANMLAIRGGRPELLNLRDIIQA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FRE+V+ RR+K+ L KAR+RAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   I L++      G   T  LSE Q RAIL+LRL RLT LGRD+I +EL  L
Sbjct: 418 EWPIAEIAPYIRLVEAVESE-GFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+IL++R +L  +++ EL++++D+  TPRR+ I      ++DED I REDMVV
Sbjct: 477 ADSITELLEILANRVKLYEVMRGELVAIRDQFATPRRSEIAAAADGIDDEDLIEREDMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED VT+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSNHGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I+T++P PEDE+ W  L+V+FAT  G VRRN
Sbjct: 597 YKVWRLPEGGPATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAKGAVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  +  +GKIAM+ D    D ++ V     E+D+LL T+ G+ +RF    +R F  
Sbjct: 657 SMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRGI+L   D+VIS++++       +ER  Y++                   K +
Sbjct: 717 RTSTGVRGIALKGEDEVISLSVLHRVGTTQEEREAYLRFAPW---------------KGE 761

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +S ER +EL+  EQFILTV   G+GK +S+Y++R + R G+GI  T++  I   
Sbjct: 762 KEGEPELSVERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIARN 819

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP +   Q++LV+D+  LIR+ +  +R+  R + G+ +F+ A  E VVS  RI 
Sbjct: 820 GDVVASFPASKGHQLMLVTDQAKLIRMSLASLRVIGRGSAGLRLFNVAPGEHVVSAARIE 879

Query: 899 ESEIVDE 905
           E+E   E
Sbjct: 880 ETEEDAE 886


>gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
 gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
          Length = 905

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/891 (51%), Positives = 634/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   NK
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IRG + IE     R+ I++TEIPY VNKA ++EKIA++V+EKRI  I+DLRDES++ G R
Sbjct: 243 IRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE VV
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+   E      N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEE-----FNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  IRI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
 gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
          Length = 905

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/891 (51%), Positives = 634/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFTKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+        + N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EVFNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37]
 gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37]
          Length = 911

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/895 (53%), Positives = 643/895 (71%), Gaps = 11/895 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K A+ 
Sbjct: 22  SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL K
Sbjct: 82  VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A  LL D+ KDTVDF+ NYDG  +EP VL AR+PNVLVNG  GIAVGMAT IP HNLGE
Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A++DNPD+  + LME ++GPDFPTG ++LGR+G + AY  GRGS++IR  + +E
Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAATTVE 261

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV++ IPYQVNKA M+E+IAE  R+K+I  IA ++DESDR G RVV+ELKR 
Sbjct: 262 EIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKRD 321

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR+T +Q+ F  NM+ALNG KPE+ TL G L AF+ FRE+V+ RRT YLL
Sbjct: 322 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGKPEQLTLRGFLSAFLDFREDVIARRTAYLL 381

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR+ LM+R W A DI   I LIDD 
Sbjct: 382 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALIDDP 441

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++    DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IK+ L+ILSSR R+
Sbjct: 442 THKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRERI 501

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII++E+ ++++E   PRRT IV+   DM+DED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 502 MGIIREEMTAIREEFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTAGGYIKRTALADFR 561

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA
Sbjct: 562 AQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKA 621

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 622 IVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 681

Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +  DE   +++   C++E+D++L T  G+ +RFP+  +RVF  RNS GVRGI L  GD+
Sbjct: 682 FEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGVRGIRLKNGDE 741

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H +A+ DER  Y+K     RRL++G TE+      D + +  + +ER  E+ 
Sbjct: 742 VVSMSVIRHFEAESDERASYLK----MRRLMAGVTED-EGSDEDGNADAPLEQERYAEMS 796

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G +VA FPV   DQI+
Sbjct: 797 AAENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRG--GDIVASFPVEQGDQIM 854

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           L +  G  IRVPV+ I   SR+  GV +F+T  +E VVSV  I +    +E E++
Sbjct: 855 LATSTGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWIADQ-ADEEPEAS 908


>gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
 gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
          Length = 889

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/894 (52%), Positives = 624/894 (69%), Gaps = 13/894 (1%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G    K Y K AR  G+VMG+
Sbjct: 1   MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A FLL 
Sbjct: 61  YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVD++ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D  +A
Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I++PD+  + L++ + GPDFPTG ++LGR+G + AY  GRGS+VIR  + +E+   DR 
Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRAKTRVEEIRKDRW 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV+ EIPYQVNKA+M+EKIAE VR+K+I  I+ ++DESDR G RVV+ELKR A+A+V++
Sbjct: 241 AIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVVM 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT YLL KAR+R+
Sbjct: 301 NQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERS 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD ++T   D
Sbjct: 361 HILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R+LGII  E
Sbjct: 421 GTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  V++    PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +RAQRRGGK
Sbjct: 481 LREVRELFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G+  A+GKA++NIL +
Sbjct: 541 GVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKAIVNILPI 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SR 681
             G  +  IMP   DE  W++L VVFAT  G VRRNKLSDF  +  +GKIAMK +     
Sbjct: 601 PTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKIAMKFEGEHEG 660

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             +++    + ++D++L T  G+ +RFP + +R+F  RNSVGVRGI L KGD ++SM+++
Sbjct: 661 TTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRLGKGDNLVSMSVI 720

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H +A  +ER+ Y+K     R +     ++ T  + +    G +S ER  E+   E  IL
Sbjct: 721 RHFEATSEERVAYLKQR---RLMAGLTDDDSTDDEEEQVQAGQLSTERYAEMSAAEDLIL 777

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           T++ KG GK +S++D+ +  R G G+ A   +K    G +VA FPV  +DQ++L + KG 
Sbjct: 778 TITAKGAGKVSSAHDYPVRGRGGMGVTAW--TKAMAHGPIVACFPVEMSDQVMLATSKGQ 835

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAESTE 910
            IRVPV  I   SR+  GV +FST K+E VVSV  I      E + V++  + E
Sbjct: 836 SIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWIADQGNEEDDAVEDDGAAE 889


>gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246]
 gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246]
          Length = 905

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/891 (51%), Positives = 633/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EAFNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
          Length = 941

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/914 (50%), Positives = 640/914 (70%), Gaps = 12/914 (1%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            S     +G   +++ +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  
Sbjct: 15  PSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMQENGFT 74

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K AR+ G+VMGKYHPHG++AIYDA+ RMAQ +SLR+ LI+GQGNFGS+DGDPPA
Sbjct: 75  ADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSMDGDPPA 134

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K+A  LL+ + +DTVDF PNYD S QEP VL A +PN+LVNG  GIAVGM
Sbjct: 135 AMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGANGIAVGM 194

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHN GEV+D  +A+I  P+  L+ LM+I+ GPDFPTGA+ILGR GI++A+ TGRG
Sbjct: 195 ATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALILGRAGIRSAFETGRG 254

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SIV+R  + IE+  G R  I ++EIPYQVNKAA++E+IAELVR K+I  I+DLRDESDR 
Sbjct: 255 SIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDLRDESDRS 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK+ A+ +V+LN LYRYT+LQ+ F+VN +AL+  +P++  L   L+AF+ FRE
Sbjct: 315 GLRIVIELKKDATPEVVLNHLYRYTNLQTSFAVNFLALHQGRPQQMGLRQALQAFIDFRE 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV++RR+++ L KARDR H+LVGLAIAVAN+DEV+R+IR SP+  TAR  LM R W  +D
Sbjct: 375 EVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALMARDWPVAD 434

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  L+ L+DDS   I ++ T+ L+E Q R ILELRL RLTGL RD I  EL+ +   I+E
Sbjct: 435 VGPLLALVDDSG-NIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELDEVAARIRE 493

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L+IL+S  R + ++  EL +V+ ++ +PR + IV+GL D +DE  +    MVVT++  G
Sbjct: 494 LLEILASHPRRMELMADELRAVRAQIASPRLSEIVDGLADQDDESLVEPGLMVVTLTRDG 553

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR PL  +RAQ RGG+GRS   MR +D V   F   TH  VLFF+S G  ++EKVW+L
Sbjct: 554 YVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLFFTSRGMAFREKVWKL 613

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P   P ARG++L  +L L + E +T ++P P+DE  W+NL++VFAT  GNVRRN+LSDF 
Sbjct: 614 PEAGPTARGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFATSEGNVRRNRLSDFK 673

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGV 724
            +  SG IAMKLD  D ++ V TC + ++++L T+ G+ +RF   +  +RVFAGR+S GV
Sbjct: 674 NVRASGLIAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTADVDTLRVFAGRDSTGV 733

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTEEITSLK 776
           RGI LA GDQVI+++++ H +A  +ER  Y+K  + +RR            +        
Sbjct: 734 RGIKLATGDQVIALSVLRHVEASVEERAAYLKQAAQKRRNGEEAAEAAAEAEASLAEENA 793

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + VE  +S ER  EL+ +E+ +LTV++ GFGKR+S+Y++R++ R G+GI    +S   
Sbjct: 794 EAAEVEIALSAERFAELEEQEEILLTVTDGGFGKRSSAYEYRVTGRGGQGITNITLSSRT 853

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              ++VA FPV   D ++LV+D G LIR+P +++R+  R   GV++    + E+V S   
Sbjct: 854 GR-SVVATFPVRMGDDVMLVTDNGRLIRLPADQVRVTGRQAMGVMMLRLNEAEKVTSCFT 912

Query: 897 IRESEIVDEAESTE 910
           + E +  ++  S E
Sbjct: 913 VVEQQGGEDGISEE 926


>gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
 gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
          Length = 894

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/897 (50%), Positives = 638/897 (71%), Gaps = 8/897 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVEAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ S +P TA++E+M R WNA +I  
Sbjct: 363 TNRTVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +A+LE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRERLLKILKEELIKVKEEFATPRLTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I 
Sbjct: 602 NPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A  D VISM ++    +  ++R  Y+     QR  I+          N   +  +++ + 
Sbjct: 722 AGDDSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKG-----KSFNPEELGVSLTLDS 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 ILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I ++   +E 
Sbjct: 835 DDELMLITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIADTSASEED 891


>gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
 gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
          Length = 905

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/891 (51%), Positives = 632/891 (70%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L+EGQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVNFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EAFNSEELGVSLTVPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/905 (45%), Positives = 574/905 (63%), Gaps = 67/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK +INIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIINILPLEEGERITAILPVDE---FSPEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADEDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V + D++++++D GTL+R  V+E+    R T+GV +  TA+DE VV ++RI E E VD 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVDL 846

Query: 906 AESTE 910
            E  +
Sbjct: 847 PEGED 851



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 163/436 (37%), Gaps = 33/436 (7%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R +      RR  
Sbjct: 462 LHKLTGLEHEKILDEYKALLEEIAELMHILASTERLMEVIREELETVRDA--FGDVRRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   I+        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASR--TARGKPIINILPLEEGERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              D    E  +   +  G VK+  L  + A  R   G   V +RD+D +  + I +  +
Sbjct: 634 LPVDEFSPEKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIAVNLRDDDSLIGVDITNGDS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G  +  +   ++ + ++ I+P  E +       
Sbjct: 692 DIMLFSKAGKVVRFNEDKVRAMGRTAAG--VRGMKLADEDQVVSLIVPSNEGD------- 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T  G 
Sbjct: 743 ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  +S +     RN+ GV  I  A+ + V+ +  +   +                  +
Sbjct: 803 LVRTRVSEVSQVG-RNTQGVTLIRTAEDENVVGLQRIDEVEEVDLPEGEDAADTENTAEV 861

Query: 765 ISGDTEEITSLKNDSS 780
            S + E  T      +
Sbjct: 862 TSENPETPTGDDEPQA 877


>gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
 gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 908

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/914 (52%), Positives = 640/914 (70%), Gaps = 19/914 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E  +    +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MDE---NKPERPKYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 118 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS+VIR  + +E+   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  ++ ++
Sbjct: 238 YLEGRGSVVIRAKTRVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+A+V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +
Sbjct: 298 DESDRNGVRVVVELKRDATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTS 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V+ RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 358 FLDFREDVIARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L
Sbjct: 418 RWPAVDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L+ILSSR R+LGII  EL  V+D    PRRT IV+   DMEDED I REDMVV
Sbjct: 478 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY+KR PL  +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK
Sbjct: 538 TITSGGYIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP G   ++GKA++NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN
Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +LSDF  + R+GKIAMKL      ++++   C++++D++L T  G+ +RF  + +RVF  
Sbjct: 658 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNS 717

Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRGI L ++GD+V+SM+++ H  A+  ER  ++K      R  S    E+   +N
Sbjct: 718 RESTGVRGIRLVSEGDEVVSMSVIRHFSAEPWERNAFIK------RFRSELGGEVAEDEN 771

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               EG++SEER QE+      ++T++  G G  TS++D+R+S R G+G+ A       +
Sbjct: 772 GEESEGSLSEERYQEMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAM------K 825

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GA+VA FPV   DQI+L + KG  IR PVN I   SR+  GV +F+TAK E VVSV  I
Sbjct: 826 GGAIVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWI 885

Query: 898 RESEIVD-EAESTE 910
            E +  D E  ++E
Sbjct: 886 AERDDEDAEVPTSE 899


>gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
 gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A
 gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
          Length = 905

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/891 (50%), Positives = 633/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE    +R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +   A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EAFNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
          Length = 908

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/914 (52%), Positives = 640/914 (70%), Gaps = 19/914 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E  +    +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MDE---NKPERPKYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 118 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS+VIR  + +E+   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  ++ ++
Sbjct: 238 YLEGRGSVVIRAKTRVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+A+V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +
Sbjct: 298 DESDRNGVRVVVELKRDATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTS 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V+ RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 358 FLDFREDVIARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L
Sbjct: 418 RWPAVDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L+ILSSR R+LGII  EL  V+D    PRRT IV+   DMEDED I REDMVV
Sbjct: 478 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY+KR PL  +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK
Sbjct: 538 TITSGGYIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP G   ++GKA++NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN
Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +LSDF  + R+GKIAMKL      ++++   C++++D++L T  G+ +RF  + +RVF  
Sbjct: 658 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNS 717

Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRGI L ++GD+V+SM+++ H  A+  ER  ++K      R  S    E+   +N
Sbjct: 718 RESTGVRGIRLVSEGDEVVSMSVIRHFSAEPWERNAFIK------RFRSELGGEVAEDEN 771

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               EG++SEER QE+      ++T++  G G  TS++D+R+S R G+G+ A       +
Sbjct: 772 GEESEGSLSEERYQEMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAM------K 825

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GA+VA FPV   DQI+L + KG  IR PVN I   SR+  GV +F+TAK E VVSV  I
Sbjct: 826 GGAIVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWI 885

Query: 898 RESEIVD-EAESTE 910
            E +  D E  ++E
Sbjct: 886 AERDDEDAEVPTSE 899


>gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
 gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
          Length = 905

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/900 (51%), Positives = 635/900 (70%), Gaps = 15/900 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT++  S        +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M
Sbjct: 1   MTDNNSS-------NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   N+ Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+
Sbjct: 54  HEAGNHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG G
Sbjct: 114 DGDAAAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSG 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C   +DN DI++  L+E+++GPDFPT  +ILG  GIK+A
Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI IRG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLR
Sbjct: 234 YLTGRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+ IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ A
Sbjct: 294 DESNKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE V+  RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +P  A++ELM R
Sbjct: 354 FVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMAR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW+A +I  L+ L+DD +  +  +G    +E Q +AILE+RL RLT + ++ +  +L +L
Sbjct: 414 SWDALNILPLVKLVDDKA-MLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI E L+IL SR RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVV
Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KRVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY 
Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K+++LP+ +PQ +G+ ++NIL L   E IT IMP PE++  W+NL ++FAT  GN+RR+
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF +I  +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R 
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRG+ LA+ D VISM ++    A  +ER  Y+     +R  I+   E      N   
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEE-----FNSEE 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +  +++ E   E+   E+FILTV+E GFGKR+S+Y +RI++RSG GI   D++  ++ G 
Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDIN--DKTGL 825

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V V PV  +D+++L+++ G LIR  +  +RI  R T GV +F     E+VVS   I ES
Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/906 (44%), Positives = 578/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLSEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L+D
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEE---GRHVFMATASGTVKKTALTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L +GD VIS+ +                                            
Sbjct: 722 RGINLGEGDSVISLIV-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDTTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDE 846

Query: 905 EAESTE 910
           E +S E
Sbjct: 847 ELDSLE 852



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 107/266 (40%), Gaps = 19/266 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L+ +   R    G   V + + D +  + 
Sbjct: 629 ERITAILPVREYEEGRHVFMATASGTVKKTALTDFSRPRSA--GIIAVNLNEGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS+ G V +    ++      A G   +  ++L +G+ + +++  P  E 
Sbjct: 687 LTDGSNEVMLFSANGKVVRFPETQVRSMGRTATG---VRGINLGEGDSVISLI-VPRGEG 742

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T++G  +R  ++++   +R+  G I++K+     +++        + I++
Sbjct: 743 D-----ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVDTTDQIMM 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM----AIVLHADADYDERICY 754
            T  G  VR  +S + V   RN+ GV  I  A+ + V+ +      V   + D  E    
Sbjct: 798 ITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLEPGAE 856

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSS 780
           +    A       D+E     + D++
Sbjct: 857 VAEEDAAPLDEGDDSEAPDDAEEDNA 882


>gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
 gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
          Length = 923

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/906 (51%), Positives = 625/906 (68%), Gaps = 14/906 (1%)

Query: 1   MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++   + +++            +SITDEM+ SYL YA++VI+ RAIPDLRDGLKPVHRR
Sbjct: 1   MSDTPDTPEDDNAPAPYVYDGPQISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M + G   +K Y K AR  G+VMGKYHPHG+ AIYDAL RMAQD+S+ L L++GQG
Sbjct: 61  ILYAMYETGNSHDKSYRKSARPVGDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE R+ K A F+L D+ KDTVDF+ NYDG  +EP VL +R+PN+L
Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNML 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  + L+E + GPDFPTG ++LGR+
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLSSEDLIEYVPGPDFPTGGIMLGRS 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + AY  GRGS+++R  + +E+   DR  I++ EIPYQVNKA M+EKIAE VREK+I  
Sbjct: 241 GARKAYLEGRGSVIVRAKTRVEEIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+ ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL 
Sbjct: 301 ISHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L +FV FREEVV RRT + L KAR+R+H+L GLA+AV N+DE+V  IR S +   AR 
Sbjct: 361 RFLTSFVDFREEVVARRTAFELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R W A  I + I+LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++ +
Sbjct: 421 KLMTRRWPAESILEYIELIDDPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTD 480

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +I++ L+IL SR R++ II+ EL  V+D+   PRRT IV+   DM+DED I R
Sbjct: 481 ELQELAGKIRDYLEILGSRERIMQIIRDELHEVRDQFAVPRRTAIVDWSGDMDDEDLIER 540

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMVVTV+  GY+KR PL+ +RAQRRGGKG  G+  ++ED VT LF+ +THT +LFF++ 
Sbjct: 541 EDMVVTVTSGGYIKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTD 600

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  YK K WRLP GS  ++GKA++NIL +  G  +  I+P   DE  W +L V FAT  G
Sbjct: 601 GMAYKLKTWRLPQGSRTSKGKAIVNILPMPVGASVAAILPIDRDEKDWADLQVTFATSAG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISA 712
            VRRN LSDF  +  +GKIAMK +      ++++V     ++D++L T  G+ +RF  + 
Sbjct: 661 TVRRNALSDFTNVKSNGKIAMKFEGEHAETKLINVRITAPDDDVMLVTNSGRAIRFRAND 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF  R S GVRGI L   D V+SM+++ H +AD  ER  Y+K     RR ++G  ++ 
Sbjct: 721 VRVFNSRASTGVRGIKLNGDDTVVSMSVIRHFEADPAERAAYLK----MRRAMAGLADDA 776

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               +D+   G +S+ER  E+   E  ILT++ +G GK +SS+D+ +  R G G+ A D 
Sbjct: 777 EVDDDDAVEAGQLSQERYAEMSAAENLILTITAQGAGKLSSSHDYPLRGRGGMGVTAMD- 835

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K    G +V  FPV+ +DQI+LV+++G  IRVPV  I   SR+  GV +F T K+E V+
Sbjct: 836 -KAMRGGEIVTSFPVDIHDQIMLVTNQGQSIRVPVEGISFRSRSAGGVKVFDTGKNEMVM 894

Query: 893 SVERIR 898
           SV  I 
Sbjct: 895 SVAWIA 900


>gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 896

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/917 (46%), Positives = 581/917 (63%), Gaps = 45/917 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D                        +S++    +   E      ++SS
Sbjct: 721 ATGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEADESS 756

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V  +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 757 VSLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDE-------AESTE 910
           +  DE        ESTE
Sbjct: 875 DDEDENGEALDNVESTE 891


>gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20]
 gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 896

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/917 (46%), Positives = 581/917 (63%), Gaps = 45/917 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D                        +S++    +   E      ++SS
Sbjct: 721 ATGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEADESS 756

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V  +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 757 VSLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDE-------AESTE 910
           +  DE        ESTE
Sbjct: 875 DDEDENSEALDNVESTE 891


>gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193]
 gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193]
          Length = 915

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/916 (51%), Positives = 637/916 (69%), Gaps = 17/916 (1%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MT+   + +  +E           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MTDTPETPENADENFPQRATYDGPTVSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K A F+L+D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNAAAMRYTEVRMDKPAAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+I++PD+  + L++ + GPDFPTGA++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGAIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  + +E+   DR  IVV E+PYQVNKAAM+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+AV N+DE+V  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A  I   I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAQPILQYIALIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+ILSSR R++GII  EL  V+D+   PRRT IV+   DM+DED I
Sbjct: 481 TDELEELAGKIKEYLEILSSRERIMGIICDELREVRDQFAVPRRTEIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL  +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP  S   +GKA++NIL +  G  I  IMP    +  W +L +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQSSRTGKGKAIVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN+LSDF  +  +GKIAMK +      ++++   C++++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNRLSDFTNVKSNGKIAMKFEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPT 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  RNSVGVRGI L++G +V+SM+++ H DA+  ER  ++K   ++      + +
Sbjct: 721 TDVRVFNSRNSVGVRGIKLSEGAEVVSMSVIRHFDAEPWERSAFIKRFRSELGSDVSE-D 779

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +  +   +   EG +SEER QE+      ++T+++ G G  TS++D+R+S R G+G+ A 
Sbjct: 780 DAVAEVAEEIEEGALSEERYQEMLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAM 839

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 + G +VA FPV   DQI+L + KG  IRVPV+ I   SR+  GV +F+T K E 
Sbjct: 840 ------KGGEIVATFPVELGDQIMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEE 893

Query: 891 VVSVERIRESEIVDEA 906
           VVSV  I ES   DE 
Sbjct: 894 VVSVAWIAESGEDDET 909



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 89/266 (33%), Gaps = 53/266 (19%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSLGF 597
           +V  +  G V+R  LS +   +  GK          D  + +  I S    V+  +S G 
Sbjct: 655 IVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEDHADTKLINARICSEDDDVMLVTSTGR 714

Query: 598 VYKEKVWRLPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSW------------- 643
             +     + +  S  + G   +  + L++G  + ++      ++               
Sbjct: 715 AIRFPTTDVRVFNSRNSVG---VRGIKLSEGAEVVSMSVIRHFDAEPWERSAFIKRFRSE 771

Query: 644 ---------------------------------NNLYVVFATKHGNVRRNKLSDFIQINR 670
                                             N  +V   K G        D+    R
Sbjct: 772 LGSDVSEDDAVAEVAEEIEEGALSEERYQEMLAANDLLVTINKPGAGNLTSAHDYRVSGR 831

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G+    +    EI++       + I+L T  GQ +R P+     F  R++ GVR  +  
Sbjct: 832 GGQGVGAMKGG-EIVATFPVELGDQIMLATSKGQSIRVPV-DGISFRSRSAGGVRVFNTG 889

Query: 731 KGDQVISMAIVLHADADYDERICYMK 756
           KG++V+S+A +  +  D +  +   +
Sbjct: 890 KGEEVVSVAWIAESGEDDETAVVSEE 915


>gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 905

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/899 (50%), Positives = 637/899 (70%), Gaps = 8/899 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEVMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +   A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++    +L +L  EI E L+
Sbjct: 423 LVKLVDDKA-MLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I  E+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQHEEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L + E IT IMP PE++  WNNL ++FAT  GN+RR+ L DF +I 
Sbjct: 602 NPQGKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDFKKIQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK+G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+ D VISM ++    +  ++R  Y+     +R  I+          N   +   ++ + 
Sbjct: 722 AREDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKG-----EAFNPEELGVALTADS 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGK++S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 ILEMANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +++++L+++ G LIR  +  +RI  R T GV++F   + E+VVSV  I ES   +E  +
Sbjct: 835 DNELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAESTEGEEDSA 893



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 104/241 (43%), Gaps = 21/241 (8%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR-RGGKGRSGVVMRDEDFV 577
           R+ E    ++ + C   E  ++  + +G   R P+   R  + R   G  G+ +  ED V
Sbjct: 669 RLDEDDKLIDVKPCKEDEH-ILLATKVGKALRFPVESLRVIKSRTSDGVRGMKLAREDSV 727

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ--ARGKALINILSLNQGERITTIMP 635
             +      T +   SS     ++    +P       A+G+A       N  E    +  
Sbjct: 728 ISM------TVLKGISST-KEDRDAYLTVPWEKRLEIAKGEA------FNPEELGVALTA 774

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQ 692
               E +    +++  T++G  +++    +   +R G   + +D  D+   ++ V     
Sbjct: 775 DSILEMANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKM 834

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +N+++L T  G+ +R  + ++R+  GRN+ GV    L +G++V+S++++  +    ++  
Sbjct: 835 DNELMLITNSGKLIRCKLESVRI-TGRNTSGVILFKLDEGEKVVSVSLIAESTEGEEDSA 893

Query: 753 C 753
            
Sbjct: 894 V 894


>gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
 gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
          Length = 898

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/902 (50%), Positives = 640/902 (70%), Gaps = 9/902 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RMAQ +SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +   A++ELM RSW A  I  
Sbjct: 363 TNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +        +E+Q +AILE+RL RLT + ++ +  EL +L  EI E ++
Sbjct: 423 LVKLVDDKA-MLNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYIN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I 
Sbjct: 602 NPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            SGKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SSGKIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++   ++  ++R  Y     A+R  I+   E      N   +   ++ + 
Sbjct: 722 AKEDSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEE-----FNLEELGVTLTADS 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 ILKMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKI 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAES 908
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E SE  +++E 
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETSESAEDSEL 894

Query: 909 TE 910
            E
Sbjct: 895 EE 896


>gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 887

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/906 (47%), Positives = 588/906 (64%), Gaps = 41/906 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAE V++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ R W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADMLAA 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 426 SGVDAARPEDLDEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++
Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMATAGGIVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R    R + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMG-RLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D   DE                 + E+++    + +++ N
Sbjct: 721 RGIKLA-----------LTNDLSDDESAV--------------EIEDVSDDNAEETLDLN 755

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 756 IDKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +NDQI+L++D GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E +  +
Sbjct: 814 AQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEE 873

Query: 905 EAESTE 910
               TE
Sbjct: 874 SENPTE 879


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/904 (45%), Positives = 573/904 (63%), Gaps = 67/904 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MDRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDGC+ +IDN    +D L+EII GPDFPTG +I GR GI  AY TGRG I +R  +
Sbjct: 187 LTEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGIINGRKGIFEAYRTGRGKIYVRAKT 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIEL
Sbjct: 247 EVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   +V+LN LY  T +Q++F +NMVAL   +P+ F L  +L+AF+  R EVV RRT 
Sbjct: 307 KRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQPKIFNLKEMLEAFIRHRREVVTRRTV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+RAH+L GLAIA+AN+D ++ +IR SP P  AR  L+ + W+  ++  +++  
Sbjct: 367 YELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEKA 426

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +             DG  YL+  Q +AIL+LRL +LTGL  + I +E  SL  +I E
Sbjct: 427 GDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL +VK +    R T I     D+  ED I +ED+VVT+SH G
Sbjct: 487 LLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS+G VY  +V++L
Sbjct: 547 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L +GERIT I+P    E    + +++FAT  G V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLGEGERITAILPV---EEYSADKFILFATAKGTVKKTALNAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   SG  A+ L   DE++ V      N+++L +  G+ VRF    +R    R + GVRG
Sbjct: 664 RPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAMG-RTATGVRG 722

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+V+S+ +     A                                        
Sbjct: 723 INLEGSDRVVSLIVPDEDGA---------------------------------------- 742

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        ILTV+E GFGKRT   ++   +R+ KG+ +  VS+ N  G +V    
Sbjct: 743 -------------ILTVTENGFGKRTPQQEYPTKSRATKGVISIKVSERN--GLVVGAVQ 787

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V +ND+I+L++++GTL+R  V+E+    R T+GV +  TA+ E+VV +ERI E E+ +  
Sbjct: 788 VGENDEIMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVEVDESL 847

Query: 907 ESTE 910
              E
Sbjct: 848 LEGE 851



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 167/438 (38%), Gaps = 42/438 (9%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+       E ++   K LL +  +  H+      +   L EV+R    +   +     +
Sbjct: 462 LQKLTGLEHEAILDEYKSLLEQIAELLHI----LGSTERLMEVIREELEAVKTQYGDERM 517

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            + S  ++DI  + DLI      +      Y+ + Q     E +     G     +++E 
Sbjct: 518 TEISAASADI-SMEDLITQEDVVVTLSHQGYV-KYQPLTDYEAQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECL-DILSSRSRLLGIIKQELLSVKDELDTPRRT----RIV--------EGL 524
                 I+  L             I +       +L    RT     IV        E +
Sbjct: 575 ----DFIERLLVANTHDTILCFSSIGKVYWMRVFQLPLASRTARGRPIVNLLPLGEGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +   +    +  ++  +  G VK+  L+ Y   R    G   + + D+D +  + I  
Sbjct: 631 TAILPVEEYSADKFILFATAKGTVKKTALNAY--SRPLSSGIRAINLADDDELIGVNITE 688

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            +  V+ FS  G V +    ++      A G   +  ++L   +R+ +++   ED +   
Sbjct: 689 GNNEVMLFSDAGKVVRFNEDQVRAMGRTATG---VRGINLEGSDRVVSLIVPDEDGA--- 742

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
              ++  T++G  +R    ++   +R+  G I++K+      ++      + ++I+L T 
Sbjct: 743 ---ILTVTENGFGKRTPQQEYPTKSRATKGVISIKVSERNGLVVGAVQVGENDEIMLITN 799

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY---DERICYMKHM 758
            G  VR  +S +     RN+ GVR I  A+G+QV+ +  +   + D    +  I      
Sbjct: 800 RGTLVRTRVSEVSEVG-RNTQGVRLIRTAEGEQVVGLERIDEVEVDESLLEGEIDTEAEG 858

Query: 759 SAQRRLISGDTEEITSLK 776
            +Q    SGDTE   + +
Sbjct: 859 ESQPEAQSGDTEATGADE 876


>gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
          Length = 885

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/905 (47%), Positives = 594/905 (65%), Gaps = 41/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAE V+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE+A+REL+ R W    + +++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEMLAA 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 426 TGVDAARPEDLDEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GELLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P+S Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++
Sbjct: 605 QLPQASRGSRGRPIVNILPLNENERITAILPVTAYEE---DKFVVMATAGGIVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R    R + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAMG-RLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D + DE               +G+ EE++    + +++ N
Sbjct: 721 RGIKLA-----------LTNDLNDDES--------------AGEIEEVSDDNTEETLDLN 755

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 756 IDKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI+L++D GTL+R  V+E+ I  R T+GV +  T+++E VVS+ERI + +  +
Sbjct: 814 TQVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSENEHVVSLERICDVDDEE 873

Query: 905 EAEST 909
             + +
Sbjct: 874 GEQES 878



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 25/258 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  VV  +  G VK++ L+ +   R    G   + +RDED +  + 
Sbjct: 628 ERITAILPVTAYEEDKFVVMATAGGIVKKIALTEFSRPRSS--GIIALNLRDEDELIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA---RGKALINILSLNQGERITTIMPFPE 638
           I   +  ++ FSS G V +     +      A   RG  L     LN  E    I    +
Sbjct: 686 ITDGNNEIMLFSSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAGEIEEVSD 745

Query: 639 DESS----------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
           D +                  N+  ++ AT++G  +R KL ++   +R+  G I++K+  
Sbjct: 746 DNTEETLDLNIDKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSE 805

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              ++++       + I+L T  G  VR  +S + +   RN+ GVR I  ++ + V+S+ 
Sbjct: 806 RNGKVVAATQVVDTDQIMLITDAGTLVRTRVSEVSIVG-RNTQGVRLIRTSENEHVVSLE 864

Query: 740 IVLHADADYDERICYMKH 757
            +   D +  E+   +++
Sbjct: 865 RICDVDDEEGEQESAVEN 882


>gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202]
 gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202]
          Length = 885

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/897 (46%), Positives = 576/897 (64%), Gaps = 38/897 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I++  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A A+V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  +LSE Q RAILELRL RLTGL  + I +E  +L +
Sbjct: 423 LEAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILTSPERLMEVIREELERVKAEFGDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGE-FSADKFIFMATASGTVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  + +R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGMG-RV 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA                           +S +   +  +T E    +  SS
Sbjct: 721 ATGVRGIKLA------------------------TTEISDEVEDVEIETVENEDAEETSS 756

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V     +     +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G 
Sbjct: 757 VNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA DE VVS+ERI
Sbjct: 815 VVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871


>gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 896

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/917 (46%), Positives = 587/917 (64%), Gaps = 45/917 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D        + ++   +  I  +++  A+   +S DT+ + SL     
Sbjct: 721 ATGVRGIKLATTD--------ISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDE-------AESTE 910
           +  DE        ESTE
Sbjct: 875 DDEDENSEALDNVESTE 891


>gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 920

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/920 (51%), Positives = 624/920 (67%), Gaps = 17/920 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + E E           S+SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENEGESQPVVSTYTGPSISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G    K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHEAGNTHEKSYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K A FLL D+ K+TVDF+ NYDG  +EP VL ARYPN
Sbjct: 121 QGNFGSMDGDNAAAMRYTEVRMDKPAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVV   +A+I+NPD+  + L+  + GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVTATLALIENPDLTTEELIAYVPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+VIR  + +E+   DR  IV+ EIPYQVNK+ M+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVVIRSKTRVEEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQL+R+TS+Q+ F  NM+ALNG +PE  T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFTSMQTYFGCNMLALNGGRPETLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +L  R W A +I + I+LIDD ++ +  DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLKTRRWPAIEIAEYINLIDDPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E L+IL SR R++ II+ EL  V+++   PRRT IV+   DMEDED I
Sbjct: 481 TDELKLLAGKIREYLEILGSRDRIMAIIRDELSEVREKFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVT++  GY+KR PL  +RAQRRGGKG +G+  +DED +T LF+ +THT +LFF+
Sbjct: 541 EREDMVVTITSGGYIKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP+G   A+GKA++NIL +  G  I  IMP   DE  W++L VVFAT 
Sbjct: 601 TDGMSYKLKTWRLPLGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK +       ++ V   + ++D++L T  G+ +RF  
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R S GVRGI L   D V+SM+++ H +A  DER  Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRASTGVRGIKLQGKDTVVSMSVIRHFEATSDERAAYLK----MRRAMAGLAD 776

Query: 771 EIT-SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +     + +      I++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+ A
Sbjct: 777 DAELPDEEEGDANSQITQERYAEMSAIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTA 836

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            D S     G +VA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV +F+T K+E
Sbjct: 837 MDKSMRG--GEVVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKNE 894

Query: 890 RVVSVERIRESEIVDEAEST 909
            VVSV  I +    +  E  
Sbjct: 895 SVVSVAWIADQGDDELGEGN 914


>gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
 gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
          Length = 921

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/913 (51%), Positives = 628/913 (68%), Gaps = 17/913 (1%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             E        +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   
Sbjct: 15  PPERPVYDGPQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTH 74

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K AR  G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA
Sbjct: 75  DKAYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAA 134

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A ++L D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMA
Sbjct: 135 MRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMA 194

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGE +D C+ +I+NPD+  + L+E I GPDFPTG ++LGR G + AY  GRGS
Sbjct: 195 TNIPPHNLGEAIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRAGARKAYLEGRGS 254

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           ++ R  +H E+   DR  I+++EIPYQVNK+ M+++IAE  R+K+I  I+ ++DESDR G
Sbjct: 255 VITRAKTHTEEIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNG 314

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE  TL   L +F+ FRE+
Sbjct: 315 VRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFRED 374

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV+RRT + LNKARDRAHVL GLA+AV+N+DEVV  IR S +  +AR  LM R+W A +I
Sbjct: 375 VVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAEEI 434

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              I LIDD ++    DGT  LSE+Q RAILELRL RLT +G  ++ +EL  L  +IKE 
Sbjct: 435 LPFILLIDDPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIKEY 494

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L IL+SR R++ II+ EL   K     PRRT+IV+   DMEDED I  +DMVVTV+  GY
Sbjct: 495 LAILASRERIMQIIRDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTETGY 554

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +RAQ+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP
Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ++GKA++NIL +  G  I  IMP   DE  W++L +VFAT  G VRRN+LSDF  
Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDFTN 674

Query: 668 INRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + R+GKIAMK +      ++++   C+ ++D++L T  G+ +RF  + +RVF  R S+GV
Sbjct: 675 VMRNGKIAMKFEGENAGVQLINARICSADDDVMLVTNSGRAIRFASTDVRVFNSRASLGV 734

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D+++SM+++ H  A+ DER  Y+K     RR ++G  ++      D    GN
Sbjct: 735 RGIKLKGDDKIVSMSVIRHFKAEADERAAYLK----MRRAMAGLADDAEIEDEDVPA-GN 789

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +VA 
Sbjct: 790 ITQERYAEMSAAENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVAS 847

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR------ 898
           FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F+T K+E VVSV  I       
Sbjct: 848 FPVERDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIADQADEG 907

Query: 899 -ESEIVDEAESTE 910
            ++   D  E+TE
Sbjct: 908 GDTGSDDVTETTE 920


>gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 896

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/917 (47%), Positives = 587/917 (64%), Gaps = 45/917 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D        + ++   +  I  +++  A+   +S DT+ + SL     
Sbjct: 721 ATGVRGIKLATTD--------ISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDE-------AESTE 910
           +  DE        ESTE
Sbjct: 875 DDEDENSEALDNVESTE 891


>gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
 gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
          Length = 888

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/903 (47%), Positives = 587/903 (65%), Gaps = 37/903 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   +K 
Sbjct: 3   ELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +
Sbjct: 183 PPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ + D SD++G  +
Sbjct: 243 RAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV 
Sbjct: 303 VIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R W+  ++  +
Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422

Query: 431 ID-------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         +D +   G  DG  YLSEVQ RAILELRL RLTGL  + I +E   L +
Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  +K E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L +G  ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGE-FSADKFIFMATASGTVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  +A+R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMG-RV 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  +       +   DA+  +        + +   ++  T+++ SL     
Sbjct: 721 ATGVRGIKLATTE-------ISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSL----- 768

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G 
Sbjct: 769 -----------VIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GK 815

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA+DE VVS+ERI E 
Sbjct: 816 VVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEI 875

Query: 901 EIV 903
           E  
Sbjct: 876 EDD 878



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 104/260 (40%), Gaps = 32/260 (12%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+              +  +   +  G VK+V L  +   R    G   + +R+ 
Sbjct: 630 ERITAILP-----VPNGEFSADKFIFMATASGTVKKVSLDAFSNVRSS--GLIALKLREG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG----KALINILSLNQGERI 630
           D +  + I +  + ++ FS+ G V +     +      A G    K     +S++  E +
Sbjct: 683 DELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTEISVDDAEEV 742

Query: 631 ------------TTIMPFPEDES-----SWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
                        + +    D+            ++  T++G  +R  L ++   +R+  
Sbjct: 743 DIETVENEEAEEASSVNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATK 802

Query: 672 GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G +++K++    ++++     + + I+L T  G  VR  ++ + +   RN+ GVR I  A
Sbjct: 803 GVVSIKVNERNGKVVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVG-RNTQGVRIIRTA 861

Query: 731 KGDQVISMAIVLHADADYDE 750
           + + V+S+  +   + D  E
Sbjct: 862 EDEHVVSLERICEIEDDGIE 881


>gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305]
 gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305]
          Length = 885

 Score =  853 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/897 (46%), Positives = 579/897 (64%), Gaps = 38/897 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I++  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A A+V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPM 422

Query: 431 ID-------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         +D    +G  DG  +LSE Q RAILELRL RLTGL  + I +E  +L +
Sbjct: 423 LEAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILTSPERLMEVIREELERVKSEFGDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGE-FSADKFIFMATASGTVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  + +R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGMG-RV 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA                           +S +   +  +T E    +  SS
Sbjct: 721 ATGVRGIKLA------------------------TTEISDEVEDVEIETVENEDTEETSS 756

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V     +     +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G 
Sbjct: 757 VNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA DE VVS+ERI
Sbjct: 815 VVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871


>gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
 gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
          Length = 898

 Score =  853 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/910 (46%), Positives = 576/910 (63%), Gaps = 38/910 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422

Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++          D   +    DG  YLSE Q RAILELRL RLTGL  + I  E   L  
Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R    R 
Sbjct: 662 SLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI L                          +  S +         +    ++ SS
Sbjct: 721 ATGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSS 757

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V  +        +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 758 VSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GK 815

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E 
Sbjct: 816 VVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEP 875

Query: 901 EIVDEAESTE 910
           E  DE ES +
Sbjct: 876 E-DDENESLD 884



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 172/458 (37%), Gaps = 71/458 (15%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E +V   K LL +  +  H+L      +  + E   + R   +    RR  
Sbjct: 462 LHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIRE--ELERVKTDFNDERRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRN 475
           +  +    +I+DLI   D       +    Y  LS+ + +     +    T +  DD   
Sbjct: 520 ITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQR-RGGKGKSATKMKEDDFIE 578

Query: 476 ELNSLGIEIKECLDILSSRSRLLGI----------------IKQELLSVKDELDTPRRTR 519
           +L  L     + +   SSR RL  +                I   L  VK+E    R T 
Sbjct: 579 KL--LVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPLVKEE--NERITA 634

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I+              +  +   +  G VK+V L  +   R    G   + +R+ D +  
Sbjct: 635 ILP-----IPNGEFSADKFIFMATASGVVKKVSLDAFSNVR--ASGLIALKLREGDELIG 687

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI------------------ 621
           + I   ++ ++ FS+ G V +     +      A G   I +                  
Sbjct: 688 VDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIEEAEIIET 747

Query: 622 ----------LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                     +SL++   ++ ++P  E +       ++  T++G  +R  +S++   +R+
Sbjct: 748 DNEEAEDSSSVSLDKDRVVSLVIPRTEGD-------ILTVTQNGYGKRTVISEYPVKSRA 800

Query: 672 --GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             G +++K++    ++++     + + I+L T  G  VR  ++ + +   RN+ GVR I 
Sbjct: 801 TKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVG-RNTQGVRIIR 859

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            A+ +QV+S+  V   + D +E +  +++         
Sbjct: 860 TAEDEQVVSLERVCEPEDDENESLDALENAETAETSTE 897


>gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 907

 Score =  853 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/914 (52%), Positives = 637/914 (69%), Gaps = 15/914 (1%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++   + +  +E           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPETPENMDETPPDRPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNTHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAASLLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  + L+E + GPDFPTG V+LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTSEQLIEYVPGPDFPTGGVMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  +  E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI
Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRTEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W AS+I+  + LIDD    +  DGT  L+EVQ RAIL+LRL RLT +G  ++
Sbjct: 421 REKLMTRRWPASEIEGYLRLIDDPLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE LDILSSR R++ II  EL SV+++   PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAAKIKEYLDILSSRERIMSIIGDELRSVREQFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP  S   +GKA++NIL +  G  I  IMP    +  W NL +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQSSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G+VRRN+LSDF  + R+GKIAMKL    E+++   C+++ D++L T  G+ +RF  + +
Sbjct: 661 AGDVRRNRLSDFTNVRRNGKIAMKLPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDV 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           RVF  R S GVRGI L  GD V+SM+++ H +AD DER  Y+K     RR ++G  ++  
Sbjct: 721 RVFNSRESTGVRGIKLTNGDHVVSMSVIRHFEADPDERAAYLK----MRRAVAGIADDGE 776

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           +   D +  G+IS+ER  ++   E  ILT++  G GK +SS+D+ +  R G G+ A D  
Sbjct: 777 T-DEDEATPGSISQERYAQMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMD-- 833

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LVA FPV+ +DQI+L + KG  IRVPV+ I   SR+  GV +F+T K E VVS
Sbjct: 834 RAMRGGELVASFPVDLDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVS 893

Query: 894 VERIRESEIVDEAE 907
           V  I +    +E E
Sbjct: 894 VAWIADQ-GEEETE 906



 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 97/285 (34%), Gaps = 40/285 (14%)

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+  R+    F    R+  +    D  DE    +   +E+ ++  T  G   R P++  R
Sbjct: 509 GDELRSVREQFAVPRRTEIVDWSGDMEDE----DLIEREDMVVTVTSGGYIKRTPLADFR 564

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGD 768
               R   G+ G+   + D V ++ +      +L    D          +    R   G 
Sbjct: 565 A-QKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGK 623

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                           I      + + +   I+  +  G  +R    DF    R+GK   
Sbjct: 624 AIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNVRRNGK--I 681

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAK 887
           A  + +  E   LV     ++++ ++LV++ G  IR    ++R+  SR + GV       
Sbjct: 682 AMKLPEDVE---LVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIKLTN 738

Query: 888 DERVVS-----------------------VERIRESEIVDEAEST 909
            + VVS                       V  I +    DE E+T
Sbjct: 739 GDHVVSMSVIRHFEADPDERAAYLKMRRAVAGIADDGETDEDEAT 783


>gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 898

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/910 (46%), Positives = 576/910 (63%), Gaps = 38/910 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422

Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++          D   +    DG  YLSE Q RAILELRL RLTGL  + I  E   L  
Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R    R 
Sbjct: 662 SLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI L                          +  S +         +    ++ SS
Sbjct: 721 ATGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSS 757

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V  +        +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 758 VSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GK 815

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E 
Sbjct: 816 VVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEP 875

Query: 901 EIVDEAESTE 910
           E  DE ES +
Sbjct: 876 E-DDENESLD 884



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 172/458 (37%), Gaps = 71/458 (15%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E +V   K LL +  +  H+L      +  + E   + R   +    RR  
Sbjct: 462 LHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIRE--ELERVKTDFNDERRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRN 475
           +  +    +I+DLI   D       +    Y  LS+ + +     +    T +  DD   
Sbjct: 520 ITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQR-RGGKGKSATKMKEDDFIE 578

Query: 476 ELNSLGIEIKECLDILSSRSRLLGI----------------IKQELLSVKDELDTPRRTR 519
           +L  L     + +   SSR RL  +                I   L  VK+E    R T 
Sbjct: 579 KL--LVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPLVKEE--NERITA 634

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I+              +  +   +  G VK+V L  +   R    G   + +R+ D +  
Sbjct: 635 ILP-----IPNGEFSADKFIFMATASGVVKKVSLDAFSNVR--ASGLIALKLREGDELIG 687

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI------------------ 621
           + I   ++ ++ FS+ G V +     +      A G   I +                  
Sbjct: 688 VDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIEEAEIIET 747

Query: 622 ----------LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                     +SL++   ++ ++P  E +       ++  T++G  +R  +S++   +R+
Sbjct: 748 DNEEAEDSSSVSLDKDRVVSLVIPRTEGD-------ILTVTQNGYGKRTVISEYPVKSRA 800

Query: 672 --GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             G +++K++    ++++     + + I+L T  G  VR  ++ + +   RN+ GVR I 
Sbjct: 801 TKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVG-RNTQGVRIIR 859

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            A+ +QV+S+  V   + D +E +  +++         
Sbjct: 860 TAEDEQVVSLERVCEPEDDENESLDALENAETVETSTE 897


>gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 887

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/906 (46%), Positives = 587/906 (64%), Gaps = 41/906 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIA+ V++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q    +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTLGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+   W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAA 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 426 SGVDAARPEDLDEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++
Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMATAGGIVKKITLTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R    R + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMG-RLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D + DE                 + E+++    + +++ N
Sbjct: 721 RGIKLA-----------LTNDLNDDESAV--------------EIEDVSDDNAEETLDLN 755

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 756 IDKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +NDQI+L+++ GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E +  +
Sbjct: 814 AQVEENDQIMLITNAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEE 873

Query: 905 EAESTE 910
               TE
Sbjct: 874 SENPTE 879


>gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
 gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
          Length = 906

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/889 (50%), Positives = 628/889 (70%), Gaps = 8/889 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 4   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 64  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 124 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 184 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE    +R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 244 MRGRAEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 304 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM   W A +I  
Sbjct: 364 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILP 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 424 LVKLVDDKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLN 482

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 483 ILGSRTRLLEILKAELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 542

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 543 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 602

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L  F ++ 
Sbjct: 603 NPQGKGRPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAFKKLQ 662

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RF + ++RV   R S GVRG+ L
Sbjct: 663 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGMKL 722

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 723 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EAFNPEELGVSLTAPA 777

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 778 ILEMAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 835

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I 
Sbjct: 836 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIA 884


>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
 gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
          Length = 879

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/904 (45%), Positives = 581/904 (64%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLREVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAI++AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL +++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILASAERLMEVIREELEAMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R    R++ GV
Sbjct: 663 FSRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAMG-RSASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIKLAEGDKVVSLIVPREEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 574/905 (63%), Gaps = 67/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K
Sbjct: 6   KEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDG+ + P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GCVA+I+NP   ++ L+E I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIISGRKGIEEAYRTGRGKIYLRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    +E I+V E+PYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE
Sbjct: 246 AEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR  SA+V+LN LY  T LQ++F +NMVAL+  +P+ F L   L+ F+  R EVV RRT
Sbjct: 306 VKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQPKVFNLKDTLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLAIA+AN+D V+ +I+ SP+P  A+ +L  + W   D+ ++++ 
Sbjct: 366 VYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAEMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  D I +E   L   I 
Sbjct: 426 AGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLLDVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL +++DE    RRT I     D++ ED I RED+VVT+SH 
Sbjct: 486 ELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQ+RGGKG+S   M+DEDF+  L + +TH  +L FS+ G +Y  KV++
Sbjct: 546 GYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++NIL L +GERIT I+P  E     +  YV  AT +G V++ +L+ +
Sbjct: 606 LPLASRNARGRPIVNILPLEEGERITAILPIKE---FVDGKYVFMATTNGTVKKTELTQY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  +E++ V+    +++I+L +  G+ VRF    +R    R + GVR
Sbjct: 663 SRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPMG-RTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +  +V+S+ +                                             
Sbjct: 722 GIRLEEDQKVVSLIV--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT +E G+GKRT   ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 737 --------PQGEGAVLTATENGYGKRTDIAEYPAKSRATKGVVSIKVSERN--GLVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN++D+I+L+SD+GTL+R    E+    R T+GV +  T ++E VV ++RI E E  + 
Sbjct: 787 QVNEDDEIMLISDQGTLVRTRATEVSTVGRNTQGVTLIRTGENENVVGLQRIDEVESSNI 846

Query: 906 AESTE 910
               E
Sbjct: 847 ETDEE 851



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 113/270 (41%), Gaps = 15/270 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +      V    V   +  G VK+  L+ Y   R    G   V + D + +  + 
Sbjct: 628 ERITAILPIKEFVDGKYVFMATTNGTVKKTELTQYSRPR--ANGIIAVNLNDGNELIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +    + ++ FS  G V +    ++      A G   +  + L + +++ +++  P+ E 
Sbjct: 686 LTDGDSEIMLFSDAGKVVRFHEEQVRPMGRTATG---VRGIRLEEDQKVVSLI-VPQGEG 741

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           +     V+ AT++G  +R  ++++   +R+  G +++K+      ++      ++++I+L
Sbjct: 742 A-----VLTATENGYGKRTDIAEYPAKSRATKGVVSIKVSERNGLVVGAVQVNEDDEIML 796

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR   + +     RN+ GV  I   + + V+ +  +   ++   E       +
Sbjct: 797 ISDQGTLVRTRATEVSTVG-RNTQGVTLIRTGENENVVGLQRIDEVESSNIETDEEGNVI 855

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            A    ++ D +    L +D+   G+   E
Sbjct: 856 EADAVTVTTDIDSAQPLASDNESTGSDDTE 885


>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
 gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
          Length = 867

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/907 (45%), Positives = 577/907 (63%), Gaps = 68/907 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK 
Sbjct: 3   EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I
Sbjct: 183 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R
Sbjct: 243 RARAEVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV
Sbjct: 303 IVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ RSW   ++  
Sbjct: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             +G  +L+E Q +AIL+LRL +LTGL  + +  E   L 
Sbjct: 423 MLERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I+E L IL S  RL+ +I++EL +++D  + PRRT I E   D+  ED I +ED+VVT
Sbjct: 483 KQIEELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITENTADINIEDLINQEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  
Sbjct: 543 LSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWM 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +   YV  AT  G V++  
Sbjct: 603 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L DF +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R    R +
Sbjct: 660 LQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAMG-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L   D+V+S+                                           
Sbjct: 719 TGVRGIKLMDNDKVVSLI------------------------------------------ 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                      +   E  ILTV+E GFGKRT   ++   +R+ +G+ +  VS+ N  G +
Sbjct: 737 -----------IPRGEGHILTVTENGFGKRTEEAEYPTKSRATQGVISIKVSERN--GHV 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V D DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E+E
Sbjct: 784 VGAIQVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 843

Query: 902 IVDEAES 908
             +  + 
Sbjct: 844 DDENTDE 850


>gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
 gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
          Length = 888

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/903 (47%), Positives = 587/903 (65%), Gaps = 37/903 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   +K 
Sbjct: 3   ELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +
Sbjct: 183 PPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ + D SD++G  +
Sbjct: 243 RAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV 
Sbjct: 303 VIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R W+  ++  +
Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422

Query: 431 ID-------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         +D +   G  DG  YLSE Q RAILELRL RLTGL  + I +E   L +
Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  +K E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L +G  ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGE-FSADKFIFMATASGTVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  +A+R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMG-RV 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  +       +   DA+  +        + +   ++  T+++ SL     
Sbjct: 721 ATGVRGIKLATTE-------ISVDDAEEVDIETVENEEAEEASSVNLTTDKVVSL----- 768

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G 
Sbjct: 769 -----------VIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GK 815

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA+DE VVS+ERI E 
Sbjct: 816 VVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEI 875

Query: 901 EIV 903
           E  
Sbjct: 876 EDD 878



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 104/260 (40%), Gaps = 32/260 (12%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+              +  +   +  G VK+V L  +   R    G   + +R+ 
Sbjct: 630 ERITAILP-----VPNGEFSADKFIFMATASGTVKKVSLDAFSNVRSS--GLIALKLREG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG----KALINILSLNQGERI 630
           D +  + I +  + ++ FS+ G V +     +      A G    K     +S++  E +
Sbjct: 683 DELIGVDITNGESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTEISVDDAEEV 742

Query: 631 ------------TTIMPFPEDES-----SWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
                        + +    D+            ++  T++G  +R  L ++   +R+  
Sbjct: 743 DIETVENEEAEEASSVNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATK 802

Query: 672 GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G +++K++    ++++     + + I+L T  G  VR  ++ + +   RN+ GVR I  A
Sbjct: 803 GVVSIKVNERNGKVVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVG-RNTQGVRIIRTA 861

Query: 731 KGDQVISMAIVLHADADYDE 750
           + + V+S+  +   + D  E
Sbjct: 862 EDEHVVSLERICEIEDDGIE 881


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/893 (45%), Positives = 565/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFP  A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L  GERIT I+P  E  +   + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFSA---DKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADDDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/893 (45%), Positives = 566/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L  GERIT I+P  E  +   + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFSA---DKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADDDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839


>gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 896

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/909 (46%), Positives = 581/909 (63%), Gaps = 38/909 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M++ DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA           + ++   +  I  +++  A+   +S DT+ + SL     
Sbjct: 721 ATGVRGIKLA--------TTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDEAEST 909
           +  DE    
Sbjct: 875 DDEDENSEA 883



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 109/286 (38%), Gaps = 47/286 (16%)

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I   L  VK+E    R T I+              +  +   +  G VK+V L  +   R
Sbjct: 618 IVNILPLVKEE--NERITAILP-----IPNGEFSADKFIFMATASGVVKKVSLDSFSNVR 670

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
               G   + +R+ D +  + I    + ++ FS+ G V +     +      A G   I 
Sbjct: 671 SS--GLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMGRTATGVRGIK 728

Query: 621 ILS---------------------------LNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + +                           L+    ++ ++P  E +       ++  T+
Sbjct: 729 LATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-------ILTVTQ 781

Query: 654 HGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+  G +++K++    ++++     + + I+L T  G  VR  +
Sbjct: 782 NGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGTLVRTRV 841

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           + + +   RN+ GVR I  A  + V+S+  V   D + +       
Sbjct: 842 AEVSLVG-RNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDN 886


>gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1]
 gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1]
          Length = 919

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/920 (52%), Positives = 630/920 (68%), Gaps = 17/920 (1%)

Query: 1   MTEHIISSD-------EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MT+     +       E  E    S+ I+ EM+ S+L YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MTDTPEPPENGEDTLPERPEYSGPSIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M + G    K Y K AR  G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILFAMHETGNTHEKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+   A +LL+D+ KDTVDF+ NYDG  QEP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDAPAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+ PD+  + L+E +  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIEKPDLSSEELIEYVPAPDFPTGGIILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  +  E+   DR  IV+ EIPYQVNKA+M+E+IAELVR+K+I
Sbjct: 241 RSGAQKAYIEGRGSVIIRAKTRTEEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+ + DESDR G RVV+ELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG KPE+ T
Sbjct: 301 DGISGVADESDRIGVRVVVELKRDATPEVVLNQLFRFTQMQTSFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L G L +F+ FREEVV RRT + L KARDRAHVL GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRGFLTSFLDFREEVVARRTAFELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM R+W A +I   I LIDD ++    DGT  LSE Q RAILELRL RLT LG  ++
Sbjct: 421 RAALMTRAWPAEEILPFIKLIDDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IK+ L IL+SR R+L II  EL  V+ +    RRT IVE   DM+DED I
Sbjct: 481 TDELEELAGKIKDYLAILASRERILEIISNELAEVRAKFAVDRRTEIVEWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            R DMVVT++  GY+KR PL+ +RAQ+RGGKG +G  M+D+D VT +F+ +THT +LFF+
Sbjct: 541 ERSDMVVTITQGGYIKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP GS  +RGKA++NIL +  G  I  IMP   DE  W+ L VVF T 
Sbjct: 601 TGGMVYKLKTWRLPSGSRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVFCTD 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN LSDF  + R+GKIAMK +   E   +++    + ++D++L TK G+ +RFP 
Sbjct: 661 RGTVRRNALSDFANVMRNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R S GVRGI L K D+V+SM+I+ H DA+  ER  Y+K     RRL++G TE
Sbjct: 721 TDVRVFNSRASTGVRGIKLGKDDEVVSMSIIRHFDAEASERAAYLKQ----RRLMAGVTE 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           E  + ++D   EG++S ER  E+   E  ILT++  G GK +SS+D+ +  R G+G+ A 
Sbjct: 777 EAETDEDDVP-EGDLSPERYAEMSAAEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAI 835

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G L+A FPV  +DQI+L +  G  IRVP++ I   SR+  GV +F+TAK E 
Sbjct: 836 D--KAMRGGTLIASFPVEMDDQIMLATSTGQSIRVPIDGISFRSRSAGGVKVFNTAKGED 893

Query: 891 VVSVERIRESEIVDEAESTE 910
           +VSV  I +    D     E
Sbjct: 894 IVSVAYIADQGDEDADVIDE 913


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/894 (45%), Positives = 567/894 (63%), Gaps = 67/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIAREDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVDE---FSPEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADEDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 840



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/436 (16%), Positives = 167/436 (38%), Gaps = 33/436 (7%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL++  +  H+L      +  + E +  +R +     ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKALLDEIAELMHILASTERLMEVIREELETVRDA--FGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASR--TARGKPIVNILPLEEGERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              D    E  +   +  G VK+  L  + A  R   G   V +RD+D +  + I +  +
Sbjct: 634 LPVDEFSPEKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIAVNLRDDDSLIGVDITNGDS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G  +  +   ++ + ++ I+P  E +       
Sbjct: 692 DIMLFSKAGKVVRFNEDKVRAMGRTAAG--VRGMKLADEDQVVSLIVPSNEGD------- 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T  G 
Sbjct: 743 ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +     RN+ GV  I  A+ + V+ +  +   +          +   +    
Sbjct: 803 LVRTRVAEVSQVG-RNTQGVTLIRTAEDESVVGLQRIDEVEEAELPEGEEAEAAESTTET 861

Query: 765 ISGDTEEITSLKNDSS 780
            + D +  T+  +   
Sbjct: 862 SAEDAQTPTADSDTEE 877


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/904 (45%), Positives = 577/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  
Sbjct: 186 NLSEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKDILAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+ N+D ++ +IR +  P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG   L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL +++++ +  RRT I     D+  ED I +E++VVT+SH
Sbjct: 486 AELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+ IV   D D                                     
Sbjct: 722 RGINLQDDDRVVSL-IVPRGDGD------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V  
Sbjct: 744 ---------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA++ERVV ++R+ E    D
Sbjct: 787 VQVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDD 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 102/269 (37%), Gaps = 22/269 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+                 V   +  G VK+  L+ +   R    G   V + D
Sbjct: 628 DERITAILP-------VREYEEGMNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLND 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +  + +      V+ FS+ G V +     +      A G   +  ++L   +R+ ++
Sbjct: 679 GDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATG---VRGINLQDDDRVVSL 735

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETC 690
           +    D        ++  T++G  +R  ++++   +R+  G I++K+     +++     
Sbjct: 736 IVPRGDGD------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQV 789

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + I++ T  G  VR  +S + +   RN+ GV  I  A+ ++V+ +  V     D + 
Sbjct: 790 DTADQIMMITDAGTLVRTRVSEVSIVG-RNTQGVTLIRTAEEERVVGLQRVAEPVEDDEL 848

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDS 779
                      +  I     +  +  +D 
Sbjct: 849 DSVVPVDGELPQEDIDEPESDDDAPADDE 877


>gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 896

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/917 (46%), Positives = 587/917 (64%), Gaps = 45/917 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D        + ++   +  I  +++  A+   +S DT+ + SL     
Sbjct: 721 ATGVRGIKLATTD--------ISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDE-------AESTE 910
           +  DE        ESTE
Sbjct: 875 DDEDENSEALDNVESTE 891


>gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 896

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 431/917 (47%), Positives = 585/917 (63%), Gaps = 45/917 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             D   YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M++ DF+  L I +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D        + ++   +  I  +++  A+   +S DT+ + SL     
Sbjct: 721 ATGVRGIKLATTD--------ISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDE-------AESTE 910
           +  DE        ESTE
Sbjct: 875 DDEDENSEALDNVESTE 891


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/893 (45%), Positives = 566/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L  GERIT I+P  E  +   + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFSA---DKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADDDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 168/439 (38%), Gaps = 38/439 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R       ARR  
Sbjct: 462 LHKLTGLEHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVR--DGFADARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASR--TARGKPIVNILPLEDGERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              D    +  +   +  G VK+  L  + A  R   G   V +RD+D +  + I +  +
Sbjct: 634 LPVDEFSADKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIAVNLRDDDSLIGVDITTGSS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G   +  + L   +++ +++         N   
Sbjct: 692 DIMLFSKAGKVVRFSEDKVRAMGRTAAG---VRGMKLADDDQVVSLIV------PSNEGD 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T  G 
Sbjct: 743 ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +     RN+ GV  I  A+ + V+ +  +     D  E +   +   A+   
Sbjct: 803 LVRTRVAEVSQVG-RNTQGVTLIRTAEDESVVGLQRI-----DEVEEVELPEGEEAETTE 856

Query: 765 ISGDTEEITSLKNDSSVEG 783
            + + +   +   D + EG
Sbjct: 857 ANAEQQAPEAPAEDDAEEG 875


>gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans]
          Length = 887

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/906 (46%), Positives = 586/906 (64%), Gaps = 41/906 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIA+ V++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+   W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAA 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 426 SGVDAARPEDLDEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV  T  G V++  L++
Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMTTAGGIVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R    R + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAMG-RLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D + DE                 + E+++    + +++ N
Sbjct: 721 RGIKLA-----------LTNDLNDDESAV--------------EIEDVSDDNAEETLDLN 755

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +     +      IL  ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 756 IDKVVSLVIPKNNGEILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +NDQI+L++D GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E +  +
Sbjct: 814 AQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEE 873

Query: 905 EAESTE 910
               TE
Sbjct: 874 SENPTE 879


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 579/905 (63%), Gaps = 68/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 72  SARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEI 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ GC+A ID+ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR  
Sbjct: 192 NLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRAR 251

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 252 AEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 312 EVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 372 TIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIARPWDLGNVAAMLE 431

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + +  E   L  +I
Sbjct: 432 RAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLKQI 491

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L IL S  RL+ +I++EL ++++  +  RRT I E   D+  ED I +ED+VVT+SH
Sbjct: 492 EELLYILRSPERLMEVIREELEAIRELYNDARRTEITENTADINIEDLISQEDVVVTLSH 551

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 552 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVY 611

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +   YV  AT  G V++  L D
Sbjct: 612 QLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTALQD 668

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R    R + GV
Sbjct: 669 FSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRPMG-RTATGV 727

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D+V+S+                                              
Sbjct: 728 RGIRLADEDKVVSLI--------------------------------------------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 743 --------IPRGEGHILTVTENGYGKRTAEQEYPTKSRATQGVISIKVSERN--GNVVGA 792

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V++ DQI+++++ GTL+R  V+E+ +  R T+GV +  TA++E+VV ++R+ E+E  +
Sbjct: 793 IQVDETDQIMMITNAGTLVRTRVSEVSVVGRNTQGVTLIRTAEEEKVVGLQRVAETEEDE 852

Query: 905 EAEST 909
            ++  
Sbjct: 853 NSDEA 857


>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 885

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/905 (47%), Positives = 589/905 (65%), Gaps = 41/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAE V+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPETA+REL+ R W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLAA 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                      D  Y I  DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I
Sbjct: 426 AGVDAARPEDLDEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 485 GELLHILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ ++NIL L + ERIT I+P    E    + +V+ AT  G V++  L++
Sbjct: 605 QLPQASRGSRGRPIVNILPLGENERITAILPVTAYEE---DKFVIMATAGGVVKKIALTE 661

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R    R + GV
Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAMG-RLATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA           L  D   DE                 + E+++    + +++ N
Sbjct: 721 RGIKLA-----------LTNDLSDDESAV--------------EIEDVSDDNAEETLDLN 755

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA 
Sbjct: 756 IDKVVSLVVPKNNGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAA 813

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI+L++D GTL+R  V+E+ I  R T+GV +  T++DE VVS+ERI + +  +
Sbjct: 814 TQVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSEDEHVVSLERICDVDDEE 873

Query: 905 EAEST 909
             + +
Sbjct: 874 GEQES 878



 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 108/258 (41%), Gaps = 25/258 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V+  +  G VK++ L+ +   R    G   + +RDED +  + 
Sbjct: 628 ERITAILPVTAYEEDKFVIMATAGGVVKKIALTEFSRPRSS--GIIALNLRDEDELIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA---RGKALINILSLNQGERITTIMPFPE 638
           I      ++ FSS G V +     +      A   RG  L     L+  E    I    +
Sbjct: 686 ITDGSNEIMLFSSQGRVVRFSETAVRAMGRLATGVRGIKLALTNDLSDDESAVEIEDVSD 745

Query: 639 DESS----------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
           D +                  NN  ++ AT++G  +R KL ++   +R+  G I++K+  
Sbjct: 746 DNAEETLDLNIDKVVSLVVPKNNGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSE 805

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              ++++       + I+L T  G  VR  +S + +   RN+ GVR I  ++ + V+S+ 
Sbjct: 806 RNGKVVAATQVIDTDQIMLITDAGTLVRTRVSEVSIIG-RNTQGVRLIRTSEDEHVVSLE 864

Query: 740 IVLHADADYDERICYMKH 757
            +   D +  E+   +++
Sbjct: 865 RICDVDDEEGEQESAVEN 882


>gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 896

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/909 (46%), Positives = 581/909 (63%), Gaps = 38/909 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M++ DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA           + ++   +  I  +++  A+   +S DT+ + SL     
Sbjct: 721 ATGVRGIKLA--------TTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEP 874

Query: 901 EIVDEAEST 909
           +  DE    
Sbjct: 875 DDEDENSEA 883



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 109/286 (38%), Gaps = 47/286 (16%)

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I   L  VK+E    R T I+              +  +   +  G VK+V L  +   R
Sbjct: 618 IVNILPLVKEE--NERITAILP-----IPNGEFSADKFIFMATASGVVKKVSLDSFSNVR 670

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
               G   + +R+ D +  + I    + ++ FS+ G V +     +      A G   I 
Sbjct: 671 SS--GLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAMGRTATGVRGIK 728

Query: 621 ILS---------------------------LNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + +                           L+    ++ ++P  E +       ++  T+
Sbjct: 729 LATTEISSEEIEEAEIVEIENEEAEESSVSLDTDRVVSLVIPRTEGD-------ILTVTQ 781

Query: 654 HGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+  G +++K++    ++++     + + I+L T  G  VR  +
Sbjct: 782 NGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGTLVRTRV 841

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           + + +   RN+ GVR I  A  + V+S+  V   D + +       
Sbjct: 842 AEVSLVG-RNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDN 886


>gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
 gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
          Length = 898

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/910 (45%), Positives = 582/910 (63%), Gaps = 69/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK 
Sbjct: 35  EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKP 94

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RY
Sbjct: 95  YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 154

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 155 TEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 214

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I
Sbjct: 215 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 274

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V+EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R
Sbjct: 275 RASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMR 334

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV
Sbjct: 335 IVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 394

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  
Sbjct: 395 TRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARSWDLGNVAA 454

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             +G  +L+E Q +AIL+LRL +LTGL  + +  E   L 
Sbjct: 455 MLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLL 514

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           ++I+  L IL S  RL+ +I++EL  ++D  + PRRT I E   D+  ED I +ED+VVT
Sbjct: 515 VQIEALLFILRSPERLMEVIREELEIIRDTYNDPRRTEITENTADINIEDLINQEDVVVT 574

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PLS Y AQRRGGKG+S    +DEDF+  L + +TH ++L FSS G +Y  
Sbjct: 575 LSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTHDTILCFSSRGRLYWM 634

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +N   V  AT  G V++  
Sbjct: 635 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN---VFMATASGTVKKTP 691

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R    R +
Sbjct: 692 LQEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFAEDAVRPMG-RTA 750

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L   D+V+S+                                           
Sbjct: 751 TGVRGIKLMDNDKVVSLI------------------------------------------ 768

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                      +   E  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +
Sbjct: 769 -----------IPRGEGHILTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GNV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++ DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E++
Sbjct: 816 VGAIQVDETDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETD 875

Query: 902 IVDEA-ESTE 910
             + A E+TE
Sbjct: 876 DDENAIENTE 885


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/893 (45%), Positives = 566/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL SV++     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK +INIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIINILPLEEGERITAILPVSE---FSPEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADDDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTADDENVVGLQRID 839



 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 166/437 (37%), Gaps = 36/437 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL++  +  H+L      +  + E +  +R +     ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKALLDEIAELMHILASTERLMEVIREELESVREA--FGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   I+        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASR--TARGKPIINILPLEEGERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   E  +   +  G VK+  L  + A  R   G   V +RD+D +  + I    +
Sbjct: 634 LPVSEFSPEKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIAVNLRDDDSLIGVDITDGQS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G   +  + L   +++ +++         N   
Sbjct: 692 DIMLFSKAGKVVRFSEDKVRAMGRTAAG---VRGMKLADDDQVVSLIV------PSNEGD 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T  G 
Sbjct: 743 ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +     RN+ GV  I  A  + V+ +  +   D   +  +   + ++   + 
Sbjct: 803 LVRTRVAEVSQVG-RNTQGVTLIRTADDENVVGLQRI---DEVEEVELAEGEEIADGEQA 858

Query: 765 ISGDTEEITSLKNDSSV 781
            + +  E +  + D + 
Sbjct: 859 TTSEAPEASEQQGDDTE 875


>gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola]
 gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola]
          Length = 885

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 570/901 (63%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GCHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                                            
Sbjct: 722 RGINLNGDDRVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/903 (45%), Positives = 576/903 (63%), Gaps = 68/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKILGLKEILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  ++ 
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAMLA 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L ++I
Sbjct: 426 SAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILS+  RL+ +I++EL +++D+ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L+D
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD V+S+                                              
Sbjct: 722 RGIRLGEGDSVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   +  ILTV++ GFGKRT S ++   +R+ +G+ +  VS+ N  G ++  
Sbjct: 737 --------IPRGDGCILTVTQNGFGKRTESTEYPTKSRATQGVISIKVSERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V++ DQI++++D GTL+R  V+E+    R T+GV +  TA DE VV ++R+ E    +
Sbjct: 787 IQVDEADQIMMITDAGTLVRTRVSEVSTVGRNTQGVTLIRTADDENVVGLQRVAEPVEDE 846

Query: 905 EAE 907
           E +
Sbjct: 847 ELD 849



 Score = 78.8 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 101/264 (38%), Gaps = 15/264 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L+ +   R    G   + + + D +  + 
Sbjct: 629 ERITAILPVREYEEGRHVFMATASGTVKKTALTDFSRPRSA--GIIAINLNEGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS+ G V +     +      A G   +  + L +G+ + +++    D  
Sbjct: 687 LTDGKDEVMLFSAAGKVVRFSEEAVRSMGRTATG---VRGIRLGEGDSVVSLIIPRGD-- 741

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T++G  +R + +++   +R+  G I++K+      ++      + + I++
Sbjct: 742 ----GCILTVTQNGFGKRTESTEYPTKSRATQGVISIKVSERNGPVIGAIQVDEADQIMM 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S +     RN+ GV  I  A  + V+ +  V     D +      +  
Sbjct: 798 ITDAGTLVRTRVSEVSTVG-RNTQGVTLIRTADDENVVGLQRVAEPVEDEELDGVATEAG 856

Query: 759 SAQRRLISGDTEEITSLKNDSSVE 782
             +    +   ++  S  +  + +
Sbjct: 857 ELEAAQAADLPDDAESEDDQPADD 880


>gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
 gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
          Length = 908

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/914 (51%), Positives = 634/914 (69%), Gaps = 15/914 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + +++  +T       SV+I  E++ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENDDDLPVTRMAHAGPSVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYGMYEAGNTHDKSYRKSARSVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K A ++L D+ KDTVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDRAAAMRYTEVRMDKPAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+IDNPD+  + ++E I  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IV+ EIPYQVNK+ M+++IAE  R+KRI
Sbjct: 241 RSGARKAYLEGRGSVIVRAKTVVEEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ T
Sbjct: 301 EGIAHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L AFV FREEV+ RRT + L KAR+RAH+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRAFLVAFVDFREEVIARRTAFELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM R W A+ I + I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 RHTLMTRRWPAAAILEYIKLIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E L+IL SR R+L II+ EL  V+D+   PRRT+IV+   DM+DED I
Sbjct: 481 TDELQELAGKIREYLEILGSRDRILQIIRDELTEVRDQFAVPRRTQIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            +EDMVVTV+  GY+KR  L+ +RAQRRGGKG S +  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EQEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP+GS  A+GKA++NIL + QG  +  IMP    E+ W++L +VFAT 
Sbjct: 601 TDGMAYKLKTWRLPLGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISA 712
            G+VRRN LSDF  +  +GKIAMKL      +++   C+ ++D++L T  G+ +RFP + 
Sbjct: 661 AGDVRRNALSDFTNVKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF GR+S GVRGI L   D+V+SM+I+ H +A+ +ER  Y+K     RR ++G  ++ 
Sbjct: 721 VRVFKGRDSTGVRGIRLQGDDKVVSMSIIRHFEAEAEERAAYLK----MRRAMAGLADDA 776

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             ++++ +  G IS ER   +   E  ILT+S KG GK +SS+D+ +  R G G+ A D 
Sbjct: 777 E-VEDEEAAPGQISPERYAAMSAAENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMD- 834

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K    G LV  FPV  +DQI+LV+  G  IRVPV  I   SR+  GV +F T K E VV
Sbjct: 835 -KAMRGGPLVTSFPVEMSDQIMLVTSTGQSIRVPVEGISFRSRSAGGVKVFDTGKGETVV 893

Query: 893 SVERIRESEIVDEA 906
           SV  I +    ++ 
Sbjct: 894 SVAWIADQGDDEDD 907


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/904 (45%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I G+ GI+ AY TGRG + IR  
Sbjct: 186 NLSEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+ N+D ++ +IR +  P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L++ Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL+++++  +  RRT I     D+  ED I  E++VVT+SH
Sbjct: 486 AELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLISEENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+ +                                            
Sbjct: 722 RGINLQDDDRVVSLIV-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGEGDILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GNVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DERVV ++R+ E    D
Sbjct: 787 VQVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDD 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 100/269 (37%), Gaps = 22/269 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+                 V   +  G VK+  L+ +   R    G   V + D
Sbjct: 628 DERITAILP-------VREYEEGMNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLND 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +  + +      V+ FS+ G V +     +      A G   +  ++L   +R+ ++
Sbjct: 679 GDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATG---VRGINLQDDDRVVSL 735

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETC 690
           +             ++  T++G  +R  ++++   +R+  G I++K+      ++     
Sbjct: 736 IV------PRGEGDILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGNVVGAVQV 789

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + I++ T  G  VR  +S + +   RN+ GV  I  A+ ++V+ +  V     D + 
Sbjct: 790 DSADQIMMITDAGTLVRTRVSEVSIVG-RNTQGVTLIRTAEDERVVGLQRVAEPVEDDEL 848

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDS 779
                         I     +  + ++D 
Sbjct: 849 DSVVPVDGELPEEDIDEPESDDDTPEDDE 877


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/895 (45%), Positives = 568/895 (63%), Gaps = 68/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+VI
Sbjct: 246 AEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LA+A+AN+D ++ +IRF+  P  A+  L+ + W    +  +++
Sbjct: 366 TIFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL+ +I++ELL++K +    RRT I E   D+  ED I +ED+VVT+SH
Sbjct: 486 GELLFILENPERLMEVIREELLAIKAQYSDARRTEITENTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E E     LYV  AT  G V++  L D
Sbjct: 606 QLPEASRGARGRPIVNLLPLEQNERITAILPVREYEE---GLYVFMATASGTVKKTALQD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G +A+ L+  DE++ V+     N+++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFAEEAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D+V+S+                                              
Sbjct: 722 RGIKLNGEDKVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV+E G+GKRT+  ++ I +R+ +G+ +  VS+ N  G ++  
Sbjct: 737 --------IPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIKVSERN--GNVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E
Sbjct: 787 IQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAE 841



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 166/449 (36%), Gaps = 40/449 (8%)

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN---LDEVVR--IIR 405
             T            +++     + LL++ R+   ++  L   + N   L EV+R  ++ 
Sbjct: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIGELLFILENPERLMEVIREELLA 508

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
                  ARR  +  +    +I+DLI+  D     + +       + Q  +  E +    
Sbjct: 509 IKAQYSDARRTEITENTADINIEDLINQED----VVVTLSHQGYVKYQPLSDYEAQRRGG 564

Query: 466 TGLGRDDIRNE--LNSLG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV- 521
            G     I+ E  ++ L      + +   SSR RL      ++  + +     R   IV 
Sbjct: 565 KGKSAARIKEEDFIDKLLVANTHDTILCFSSRGRLY---WMKVYQLPEASRGARGRPIVN 621

Query: 522 -------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
                  E +  +           V   +  G VK+  L  +   R    G   V + D 
Sbjct: 622 LLPLEQNERITAILPVREYEEGLYVFMATASGTVKKTALQDFSRPRSA--GILAVNLNDG 679

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-I 633
           D +  + +      V+ FS+ G V +     +      A G   +  + LN  +++ + I
Sbjct: 680 DELIGVDLTDGSNEVMLFSAEGKVVRFAEEAVRSMGRTATG---VRGIKLNGEDKVVSLI 736

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETC 690
           +P  E E       ++  T++G  +R   +++   +R+  G I++K+      ++     
Sbjct: 737 IPRGEGE-------ILTVTENGYGKRTAENEYPIKSRATQGVISIKVSERNGNVIGAIQV 789

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + I++ T  G  VR  +S + V   RN+ GV  I  A+ ++V+ +  V   + D D+
Sbjct: 790 EPTDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDEKVVGLQRVAEPEDDEDD 848

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDS 779
                      +   +   +  +S   D 
Sbjct: 849 EDGLAAEGEEVKSDSTDLPDANSSESVDP 877


>gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 898

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/910 (46%), Positives = 574/910 (63%), Gaps = 38/910 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422

Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++          D   +    DG  YLSE Q RAILELRL RLTGL  + I  E   L  
Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+ +DF+  L + +T  ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R    R 
Sbjct: 662 SLDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI L                          +  S +         +    ++ SS
Sbjct: 721 ATGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSS 757

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V  +        +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 758 VSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GK 815

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E 
Sbjct: 816 VVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEP 875

Query: 901 EIVDEAESTE 910
           E  DE ES +
Sbjct: 876 E-DDENESLD 884



 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 120/297 (40%), Gaps = 48/297 (16%)

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I   L  VK+E    R T I+              +  +   +  G VK+V L  +   R
Sbjct: 618 IVNILPLVKEE--NERITAILP-----IPNGEFSADKFIFMATASGVVKKVSLDAFSNVR 670

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
               G   + +R+ D +  + I   ++ ++ FS+ G V +     +      A G   I 
Sbjct: 671 --ASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIK 728

Query: 621 I----------------------------LSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +                            +SL++   ++ ++P  E +       ++  T
Sbjct: 729 LSTTEISSEEIEEAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGD-------ILTVT 781

Query: 653 KHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  +S++   +R+  G +++K++    ++++     + + I+L T  G  VR  
Sbjct: 782 QNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTR 841

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           ++ + +   RN+ GVR I  A+ +QV+S+  V   + D +E +  +++         
Sbjct: 842 VAEVSLVG-RNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETVETSTE 897


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 565/909 (62%), Gaps = 67/909 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  ++NK
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D C +++ NP+  ++ L+E++  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVLDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H E    G R+ I++ E+PYQVNK  ++EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHFEDMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 302 RVVIELKRGEIPDVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE++ II+ +P P  A+++LM +SW +  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 422 EMLKRAAMEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL++ +R+  II  EL  ++ +    RR+ IVE   D+  ED I  +D+VV
Sbjct: 482 MDVIADLLDILATAARVTAIITDELTEIRRQFGDKRRSEIVENAQDLSLEDLIAPQDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K  PL  YRAQ+RGG+G+     +++DF+  +F+ +TH  +L FS+ G VY 
Sbjct: 542 TLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L + E+I  I+     +S   N ++  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRTSRGKPIVNLFPLEENEKINAILSV---KSFDENHFIFMATSLGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F    RSG IA+ LD  D ++  E     ND++L +  G+ V F    +R    R 
Sbjct: 659 ALTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQMG-RA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ LA+  QV+S+ I  +                                     
Sbjct: 718 TRGVRGMKLAEDQQVLSLLIASN------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           +Q ++  +E G+GKRT   DFR S R  +G++A  VS+ N  G 
Sbjct: 741 ---------------DQQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERN--GL 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+D D+I+L++  G LIR  V+EIR   RAT+GV + +  + E++  +E+I E+
Sbjct: 784 VVAAKLVSDEDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVET 843

Query: 901 EIVDEAEST 909
           +  ++ E+ 
Sbjct: 844 DDEEDGETE 852



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 103/245 (42%), Gaps = 14/245 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   + LG VK+  L+ +   RR   G   + + + D++    
Sbjct: 629 EKINAILSVKSFDENHFIFMATSLGTVKKTALTEFANPRRS--GIIAINLDEGDYLIGAE 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I +    V+  S+ G         +       RG   +  + L + +++ +++    D+ 
Sbjct: 687 ITNGSNDVVLVSNGGKAVWFDEDEVRQMGRATRG---VRGMKLAEDQQVLSLLIASNDQQ 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           +     V+ AT++G  +R  L+DF +  R   G  A+ +      +++ +  + E++I+L
Sbjct: 744 T-----VMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERNGLVVAAKLVSDEDEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +S IR    R + GV  I+L +G+++  +  ++  D + D        +
Sbjct: 799 ITTGGVLIRTRVSEIRELG-RATQGVTLINLGEGEKLSGIEKIVETDDEEDGETEADNEV 857

Query: 759 SAQRR 763
             +  
Sbjct: 858 GGEIE 862


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/899 (44%), Positives = 569/899 (63%), Gaps = 67/899 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+  NYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+  IDN DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV+EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L  R WN  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL++V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P    +    + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRNARGKPIVNILPLEEGERITAILPV---DQFCEDKFIFMATGDGTVKKTPLTQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L   DQV+S+                                               
Sbjct: 722 GMKLNDDDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   +  +LTV++ G+GKRT   ++ +  R+ +G+ +  VS  N  G +V   
Sbjct: 736 -------VPANDGDVLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E +  D
Sbjct: 787 QVVEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELDETD 845


>gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 879

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/917 (44%), Positives = 574/917 (62%), Gaps = 79/917 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLSEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFVCHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LAIA+AN+D V+ +IR +  P  A+  L+ + W   ++  +++
Sbjct: 366 TIFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 QAGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL+ +I++ELL++K++ +  RRT + E   D+  ED I +ED+VVT+SH
Sbjct: 486 AELLFILENPERLMEVIREELLAIKEQYNDARRTELTENSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S    ++EDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNKGKMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E E   N   +  AT  G V++ KLS+
Sbjct: 606 QLPEASRGARGRPIVNLLPLGQNERITAILPVREYEDGLN---IFMATASGIVKKTKLSE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-------- 716
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF                
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVK 722

Query: 717 ----AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                GR + GVRGI L+ GD+V+S+                                  
Sbjct: 723 GVRAMGRTATGVRGIKLSAGDKVVSLI--------------------------------- 749

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                               +   E  ILTV+E G+GKRT+  ++   +R+ +G+ +  V
Sbjct: 750 --------------------IPRGEGEILTVTENGYGKRTAESEYPTKSRATQGVISIKV 789

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G ++    V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV
Sbjct: 790 SERN--GNVIGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVV 847

Query: 893 SVERIRESEIVDEAEST 909
            ++R+ E +  +E  +T
Sbjct: 848 GLQRVAEPDDEEEDNNT 864



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 101/257 (39%), Gaps = 30/257 (11%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  LS +   R    G   V + + D +  + 
Sbjct: 629 ERITAILPVREYEDGLNIFMATASGIVKKTKLSEFSRPRSA--GIIAVNLNEGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYK-------------EKVWRLPIGSPQARGKALINILSLNQGE 628
           +      V+ FS+ G V +              +V  +      A G   +  + L+ G+
Sbjct: 687 LTDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVKGVRAMGRTATG---VRGIKLSAGD 743

Query: 629 RITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEI 684
           ++ + I+P  E E       ++  T++G  +R   S++   +R+  G I++K+      +
Sbjct: 744 KVVSLIIPRGEGE-------ILTVTENGYGKRTAESEYPTKSRATQGVISIKVSERNGNV 796

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +        + I++ T  G  VR  +S + V   RN+ GV  I  A+ ++V+ +  V   
Sbjct: 797 IGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDEKVVGLQRVAEP 855

Query: 745 DADYDERICYMKHMSAQ 761
           D + ++       +   
Sbjct: 856 DDEEEDNNTMASPLEGH 872


>gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII]
 gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII]
          Length = 897

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 570/901 (63%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GCHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                                            
Sbjct: 722 RGINLNGDDRVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10]
 gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004]
 gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038]
 gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 891

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 570/901 (63%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GCHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                                            
Sbjct: 722 RGINLNGDDRVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
 gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
          Length = 878

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIREQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D V+S+ I     A                                      
Sbjct: 722 RGIKLAGEDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850


>gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
 gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
          Length = 896

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/917 (50%), Positives = 624/917 (68%), Gaps = 29/917 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  + +D      I+ +SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETVLADPS---DISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +N+ Y K AR+ GEVMGKYHPHG+++IYDALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  QESGFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K A  LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A IDNP I  D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    +E+  GDR  IV+T IPYQV K+ ++EKIAE  ++KR+  I+D+R
Sbjct: 238 YNTGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   L  I++A
Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEILGLRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEV+ RRTKY LNKARDRAH+L+GL +AV NLDEVV+IIR S +P  AR  L+ +
Sbjct: 358 FIKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAK 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W   +I   + L++     I  D    LS++Q RAIL+LRL RLT LGRD+I  EL  L
Sbjct: 418 EWPIGEIAPYLRLVEAIENDIDGDS-YRLSDIQVRAILDLRLHRLTALGRDEIGKELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL+ R +L  ++++EL +++ E  TPR + I      +EDED I REDMVV
Sbjct: 477 AEAITEYLAILADRVKLYAVMREELEAIEREFATPRLSEITAAADGIEDEDLIEREDMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I+T++P PEDE  W  L+V+FAT  G+VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAMGSVRRN 656

Query: 661 KLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +  F  +  +GKIAMK    D  D ++ V    + +D+LL T+ G+ +RF    +R F 
Sbjct: 657 SMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAEDVREFQ 716

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RNS GVRG+ LA GD VIS++++  + AD ++R  Y++    +        ++      
Sbjct: 717 SRNSTGVRGMKLADGDAVISLSVLHRSGADGEQREEYLRFAPWKPEKDGEMQDQAM---- 772

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                          ++  EQFILTV   G+GK +S+Y++R + R G+GI  T++  I  
Sbjct: 773 ------------FARMQENEQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIGR 818

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA FP    DQ++LV+D+  LIR+ ++ +R+  R + GV +F+ A +E VVS  +I
Sbjct: 819 NGPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVIGRNSAGVRLFNVADNEHVVSAAKI 878

Query: 898 RESE----IVDEAESTE 910
            ESE    +  E +S+E
Sbjct: 879 EESEAEADLDGETDSSE 895


>gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 891

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 570/901 (63%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                                            
Sbjct: 722 RGINLNGDDRVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
 gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
          Length = 897

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 570/901 (63%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                                            
Sbjct: 722 RGINLNGDDRVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758]
 gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758]
          Length = 897

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/901 (45%), Positives = 570/901 (63%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                                            
Sbjct: 722 RGINLNGDDRVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLSRAESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +G QVI+M +     A   E+                      
Sbjct: 719 RPMG-RQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852

Query: 894 VERIRESEIVDEAEST 909
           ++R+ ES+   E  + 
Sbjct: 853 LQRVVESDAEGEDAAD 868


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  848 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/893 (45%), Positives = 566/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L+ F
Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPVDE---FSPEKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADEDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839


>gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 930

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/905 (51%), Positives = 624/905 (68%), Gaps = 12/905 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE     +      +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEIPDPPEPPAPSDMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  E++D  +A+I NPD+ LD L+ I+ GPDFPTG +ILG  GI++A
Sbjct: 181 GIAVGMATNIPTHNPAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIILGHAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGSI+IR  + IE+   DR  IV+TEIPYQVNKA + E+IAELVR K+I  I+D+R
Sbjct: 241 FETGRGSILIRARAEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+  +P    L  +L+A
Sbjct: 301 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDNGQPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FITFREDVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMAT 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W+A+D++ L+ LI D    + +DG +YL+E Q R ILELRL RLTGL R+ I+ EL+ +
Sbjct: 421 AWDAADVEPLLALIQDEGNVV-TDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L I++SR R + ++ +EL +++ EL TPR T I +   D  DE  I    MVV
Sbjct: 480 AARINELLTIIASRPRRMEVMCEELAAIRAELATPRMTEIAQYAGDQTDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D V   F   TH  VLFFSS G  Y+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L    G+ IT ++P P+DE+ W NL++VFAT  GNVRRN
Sbjct: 600 EKVWRLPEASPTAKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+    RVFAG
Sbjct: 660 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---------DT 769
           R+S GVRGI LA+GD+V S+ ++ H +A  +ER  +++  +A+RR  +          + 
Sbjct: 720 RDSSGVRGIRLAEGDEVNSLCVLNHVEATVEERASFLRMANARRRAENAALQAGEEAEEV 779

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
               S       +  I  ER  E++  E+ +LTVS  GFG+R+S+YD+R+S R G+GI  
Sbjct: 780 AAEPSDDEALPADSVIDPERFAEMEQAEEILLTVSNAGFGRRSSAYDYRVSGRGGQGIAN 839

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +       +VA  PV +   ++LV+D G LIRVPV++IR+ SR   GV +F     E
Sbjct: 840 MTFNGGKRGSEVVATLPVINGTDVMLVTDAGRLIRVPVDQIRVMSRQASGVTLFRLDTTE 899

Query: 890 RVVSV 894
           RV SV
Sbjct: 900 RVTSV 904


>gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430]
 gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430]
 gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 878

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L+D
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIKLAEGDRVVSLIVPRDDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 105/271 (38%), Gaps = 22/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+      E  +       +   +  G VK+  L+ +   R    G   V +R
Sbjct: 627 ANERITAILPVREYAEGWN-------IFMATASGTVKKTALTDFSRPRSA--GIIAVNLR 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+D +  + + +     + FS+ G V +     +      A G   +  + L +G+R+ +
Sbjct: 678 DDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTMGRTASG---VRGIKLAEGDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++   +D +      ++  T++G  +R    ++   +R+  G I++K+      ++    
Sbjct: 735 LIVPRDDGA------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERNGPVIGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V    A+ +
Sbjct: 789 VVDGDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                         +      +  S + D  
Sbjct: 848 LDAIDGSAAEGDDDIAPEVDTDDESPEADDE 878


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/893 (45%), Positives = 566/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L+ F
Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPVDE---FSPEKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADEDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839


>gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638]
 gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638]
          Length = 888

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/904 (45%), Positives = 571/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL KDTVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELVRDQFGDARRTEITANTSDINIEDLINREDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L+ 
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN---VFMATASGTVKKTALTG 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  +D++L +  G+ VRF  +A+R    R + GV
Sbjct: 663 FSRPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D V+S+ I     A                                      
Sbjct: 722 RGIRLAGEDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103]
 gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103]
 gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355]
          Length = 880

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 577/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLREVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATASGTVKKTGLQE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D+V+S+ +     A                                      
Sbjct: 722 RGIKLAQNDRVVSLIVPREEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D+DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVEEE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington]
 gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A
 gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 905

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/902 (50%), Positives = 638/902 (70%), Gaps = 9/902 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKYSSNLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RM QD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH L++D+ K TV F  NYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGKAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GLAIA++N+DE++ II+ S +   A++ELM R W   DI  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI L+DD    +   G +  +EVQ +AILE++L RLT + ++ +  +L  L  EI E L+
Sbjct: 423 LIKLVDDKV-MLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E   PR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILDSRTRLLEILKEELIKVKEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YR+Q+RGGKGRSG+ MRDED    +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L + E IT IMP PE++  W++L ++FAT  GN+RR+ L DF +I 
Sbjct: 602 NPQGKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++R+   R S GVRG+ L
Sbjct: 662 LNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++   ++  ++R  Y+     +R  I+   E      N  ++  +++ + 
Sbjct: 722 AKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEE-----FNLEALGVHLNADS 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 ILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAES 908
           +D+++L+++ G LIR  +  +RI  R T GV++F    DE+VVSV  I E SE  +++E 
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETSESGEDSEL 894

Query: 909 TE 910
            E
Sbjct: 895 VE 896


>gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114]
 gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114]
          Length = 905

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/897 (52%), Positives = 624/897 (69%), Gaps = 9/897 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K AR 
Sbjct: 12  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 72  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I+ PD+  + L++ + GPDFPTG ++LGR G + AY  GRGS++IR  + +E
Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRGGARKAYLEGRGSVIIRAKTRVE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I+V EIPYQVNKA M+EKIAE VREK+I  IA ++DESDR G RVVIELKR 
Sbjct: 252 EIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V++NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT YLL
Sbjct: 312 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAYLL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD 
Sbjct: 372 RKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALIDDP 431

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IKE L+IL SR R+
Sbjct: 432 THTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRDRI 491

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 492 MGIIADELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 551

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG SG  ++++D VT LF+ +THT +LFF++ G  YK K WRLP G+  ++GKA
Sbjct: 552 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGARTSKGKA 611

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL + QG  I  I+P   DE  W+ L +VFAT  G VRRN LSDF  +  +GKIAMK
Sbjct: 612 IVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 671

Query: 678 LDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +       +++    + ++D++L T  G+ +RFP   +RVF  R+SVGVRG+ L+  D+
Sbjct: 672 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGVRGVKLSGHDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H DA  DER  Y+K    +R ++    +  TS ++++S    IS +R  E+ 
Sbjct: 732 VVSMSVIRHFDATADERAAYLK---MRRAMVGLTDDSETSDEDETSANATISPDRYAEMS 788

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++  G GK +SS+D+ +  R G G+ A D  K  + G +VA FPV  +DQI+
Sbjct: 789 AAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWD--KRMQTGQIVASFPVEMDDQIM 846

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EAESTE 910
           L + KG  IRVPV  I   SR+  GV +F+T K E VVSV  I +    D + E  +
Sbjct: 847 LATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQGEDDTDGEDAQ 903


>gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1]
 gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1]
          Length = 890

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/904 (45%), Positives = 579/904 (64%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I++ +I ++ALME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLREVINGCLAYIEDENISIEALMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I
Sbjct: 426 RAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILSS  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILSSAERLMEVIREELELMRDQFGDDRRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIRLAEGDRVVSLIVPREEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------IMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
 gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
          Length = 878

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILASSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIKLAEGDRVVSLIVPRDDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------IMTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 104/271 (38%), Gaps = 22/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+      E  +       +   +  G VK+  L+ +   R    G   V +R
Sbjct: 627 ANERITAILPVREYAEGWN-------IFMATASGTVKKTALTEFSRPRSA--GIIAVNLR 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+D +  + +       + FS+ G V +     +      A G   +  + L +G+R+ +
Sbjct: 678 DDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAMGRTASG---VRGIKLAEGDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++   +D +      ++  T++G  +R   +++   +R+  G I++K+      ++    
Sbjct: 735 LIVPRDDGA------IMTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERNGPVIGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V    A+ +
Sbjct: 789 VVDGDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                         +         + + D  
Sbjct: 848 LDAIDGSLAEGDEDIAPEVDAHDEAPEADDE 878


>gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
 gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
          Length = 895

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/910 (46%), Positives = 586/910 (64%), Gaps = 38/910 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N +I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L +V+TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P  E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGE-FSADKFIFMATASGVVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R    R 
Sbjct: 662 SLDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  +        + ++   D  I  +++  A    +S DT+ + SL     
Sbjct: 721 ATGVRGIKLATTE--------ISSEEIEDAEIVEIENEEADESSVSLDTDRVVSL----- 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G 
Sbjct: 768 -----------VIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GK 814

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V   DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E 
Sbjct: 815 VVAAVQVEKADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEH 874

Query: 901 EIVDEAESTE 910
           +  + +E+ +
Sbjct: 875 DEDENSEALD 884


>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
 gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
          Length = 878

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L+D
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V   +  ++ +L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIKLAEGDRVVSLIVPRDDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 105/271 (38%), Gaps = 22/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+      E  +       +   +  G VK+  L+ +   R    G   V +R
Sbjct: 627 ANERITAILPVREYAEGWN-------IFMATASGTVKKTALTDFSRPRSA--GIIAVNLR 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+D +  + + S     + FS+ G V +     +      A G   +  + L +G+R+ +
Sbjct: 678 DDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTMGRTASG---VRGIKLAEGDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++   +D +      ++  T++G  +R    ++   +R+  G I++K+      ++    
Sbjct: 735 LIVPRDDGA------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERNGPVIGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V    A+ +
Sbjct: 789 VVDGDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                         +      +  + + D  
Sbjct: 848 LDAIDGSAAEGDDEIAPEVDTDDQAPEADDE 878


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/893 (45%), Positives = 566/893 (63%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L+ F
Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPVDE---FSPEKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+                                               
Sbjct: 722 GMKLADEDQVVSLI---------------------------------------------- 735

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 736 -------VPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/895 (45%), Positives = 570/895 (63%), Gaps = 68/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 12  REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A ID+ +I ++ L+E I GPDFPT A+I GR GI +AY TGRG + IR  
Sbjct: 192 NLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRAR 251

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++IE      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 252 ANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A A+V+LN LY  T LQ  F +NMVAL   +P    L  IL+AFV  R EVV RR
Sbjct: 312 EVKRDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQPRLLNLKEILEAFVRHRREVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LA+A+AN+D ++ +IR +  P  A+  L+ R W   ++  ++ 
Sbjct: 372 TIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIARPWQLGNVSAMLA 431

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             +G  YL+E Q +AIL+LRL +LT L  D I +E   L  +I
Sbjct: 432 SAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHDKILDEYRELLKQI 491

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              L IL+S  RL+ +I++EL +VK++    RRT I E   D+  ED I +ED+VVT+SH
Sbjct: 492 AALLYILTSPERLMEVIREELEAVKEQYRDVRRTEITENSADINIEDLINQEDVVVTLSH 551

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 552 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVY 611

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E +   +  YV  AT  G V++  L D
Sbjct: 612 QLPEASRGARGRPIVNLLPLEQNERITAILPVREFD---DGHYVFMATASGTVKKTSLKD 668

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+    +N+++L +  G+ VRF  +A+R    R + GV
Sbjct: 669 FSRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVVRFAENAVRPMG-RTATGV 727

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD+V+S+ +                                            
Sbjct: 728 RGIKLHAGDKVVSLIV-------------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 744 ---------PRGEGDILTVTENGYGKRTEQSEYPTKSRATQGVISIKVSERN--GNVVGA 792

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V   DQI++++D GTL+R  V E+ I  R T+GV +  TA+DE+VV ++R+ +
Sbjct: 793 IQVEKTDQIMMITDAGTLVRTRVAEVSIVGRNTQGVTLIRTAEDEKVVGLQRVVD 847



 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 108/259 (41%), Gaps = 15/259 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L  +   R    G   V + + D +  + 
Sbjct: 635 ERITAILPVREFDDGHYVFMATASGTVKKTSLKDFSRPRSA--GIIAVNLNEGDELIGVD 692

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +    V+ FS+ G V +     +      A G   +  + L+ G+++ +++  P  E 
Sbjct: 693 LTAGKNEVMLFSAGGKVVRFAENAVRPMGRTATG---VRGIKLHAGDKVVSLI-VPRGEG 748

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T++G  +R + S++   +R+  G I++K+      ++      + + I++
Sbjct: 749 D-----ILTVTENGYGKRTEQSEYPTKSRATQGVISIKVSERNGNVVGAIQVEKTDQIMM 803

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  ++ + +   RN+ GV  I  A+ ++V+ +  V+  + + ++    ++  
Sbjct: 804 ITDAGTLVRTRVAEVSIVG-RNTQGVTLIRTAEDEKVVGLQRVVDPEEEEEDNQTLIEDT 862

Query: 759 SAQRRLISGDTEEITSLKN 777
              +     ++ E  +L  
Sbjct: 863 IGVKAEPDINSVENLTLNE 881


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  846 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/930 (43%), Positives = 567/930 (60%), Gaps = 91/930 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LM+ I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG+    ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L  GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 606 LPLASRTSRGRPIVNLLPLADGERITAILPVREYAE---DKYIIMATSNGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRGI L +G +V+S+ +     A               
Sbjct: 723 DEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDGA--------------- 767

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 ILTV+E G+GKRT   ++   +
Sbjct: 768 --------------------------------------ILTVTENGYGKRTELSEYPSKS 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ KG+ +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P N + I  R T+GV 
Sbjct: 790 RATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE-SEIVDEAESTE 910
           I  TA DE+VV ++RI E     DE E  E
Sbjct: 848 IIRTASDEKVVGLQRIDEIQGDEDEVELDE 877


>gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 879

 Score =  846 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEE---GRHIFMATASGTVKKTSLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+                                              
Sbjct: 722 RGINLQGEDRVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V  
Sbjct: 737 --------IPRGEGDILTVTQNGFGKRTAVNEYPTKSRATKGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDE 846

Query: 905 EAE 907
           E +
Sbjct: 847 ELD 849


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  846 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/909 (44%), Positives = 564/909 (62%), Gaps = 67/909 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   +N+
Sbjct: 2   NQFAKETLPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A YD + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H LL D+ KDTVDF PNYDGS  EP+++  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKISHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++ CV ++DNP+I +D L+  I GPDFPT  +I G +GIK  Y TGRG +V
Sbjct: 182 IPPHNLTEVINACVEILDNPNISIDELLNFIPGPDFPTAGIIHGNSGIKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+T    RE I++ E+PYQVNK  +LEKIAELV +K++  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P+   L  +L AF+  R EV
Sbjct: 302 RVVIELKRGEIPDVVLNNLYKQTQLQDSFGINMVALIDGQPKLLNLKQVLDAFLNHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+R H+L GLA+A+ N+DE+++II+ SP+P  A+ ELMQR W +S + 
Sbjct: 362 ITRRTVFELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVS 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            ++   D + Y            +    LS++Q + IL++RL RLTGL +D I NE   +
Sbjct: 422 SMLKQGDATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEI 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + +DIL+   R+  IIK EL  +K+     RR+ IVE   D+  ED I  +DMVV
Sbjct: 482 MDVIADLIDILNKPDRVTSIIKTELEEIKETYGDDRRSEIVENAEDLSIEDLIAPQDMVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K   L  YRAQ+RGG+G+     +D+DF+  +F+ ++H ++L FSS G VY 
Sbjct: 542 TLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L  GE+I  I+   E     +N Y+  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKE---FVDNEYIFMATAKGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF    +SG IA+KLD+ D ++       ENDI+L +  G+ V F  S +R    RN
Sbjct: 659 PLSDFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSMG-RN 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G +V+S+ I  +                                     
Sbjct: 718 ARGVRGMKLTDGGEVLSLLIAEN------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          + Q ++  +E G+GKRT   +FR S R  +G++A  VS  N  G 
Sbjct: 741 ---------------EAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRN--GQ 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V D+D+++L++  G LIR  V+EIR   RAT+GV + + + DE++  +E++ ES
Sbjct: 784 VVGAKLVGDHDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDEKLRGLEKVAES 843

Query: 901 EIVDEAEST 909
           E  DE +  
Sbjct: 844 EHHDEEDGD 852


>gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
 gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
          Length = 914

 Score =  846 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/916 (52%), Positives = 630/916 (68%), Gaps = 16/916 (1%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + E+E           SV+I  E++ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENEDEMPPMRPAYDGPSVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+  +K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRIIYSMYEKGITADKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A +L DDL KDTVDF  NYDG  +EP VL ARYPN
Sbjct: 121 QGNFGSMDGDGAAAMRYTESRLDKVAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+ID+PD+ ++ ++E I  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RTG + AY  GRGS+++R  +++E+   DR  IV+ EIPYQVNKA M++KIAE  REK+I
Sbjct: 241 RTGARKAYIEGRGSVIVRAKTNVEEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ T
Sbjct: 301 EGIAHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L  F+ FRE+VV RRT + L KAR+RAHVL GLA+AV N+DE+V  IR S +  TA
Sbjct: 361 LRAFLAYFIDFREDVVARRTAFELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A DI + I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRKWPAQDILEYIKLIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E L+IL SR R++ II+ EL  V+D    PRRT IV+   DMEDED I
Sbjct: 481 TDELQELAGKIREYLEILGSRERIMQIIRDELTEVRDLFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            +EDMVVTV+  GY+KR  L+ +RAQRRGGKG S +  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EKEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP+GS  A+GKA++NIL +  G  I  IMP    E  W++L VVFAT 
Sbjct: 601 TDGMVYKLKTWRLPLGSRTAKGKAIVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R+SVGVRGI L   D+V+SM+I+ H  A+ +ER  Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRSSVGVRGIKLQGDDKVVSMSIIRHFKAEAEERAAYLK----MRRAMAGLAD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +  +   + +V G IS+ER  E+   E  ILT++ +G GK +SS+D+ +  R G G+ A 
Sbjct: 777 DAETDDEEEAVAGAISQERYAEMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAM 836

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    GALV  FPV  +DQI+LV+  G  IRVP+  I   SR   GV +F T K E 
Sbjct: 837 D--KAMRGGALVTSFPVEISDQIMLVTSTGQSIRVPIEGISFRSRGAGGVKVFDTGKGET 894

Query: 891 VVSVERIRESEIVDEA 906
           VVSV  I +    +E 
Sbjct: 895 VVSVAWIADQGDAEED 910


>gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 901

 Score =  846 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/918 (45%), Positives = 588/918 (64%), Gaps = 42/918 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ +    +   + I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 7   MTDLV---QDNTHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+
Sbjct: 64  HEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSI 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  
Sbjct: 124 DGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A I+N +I +D LM  I GPDFPT A+I GR GI+ A
Sbjct: 184 GIAVGMATNIPPHNLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALINGRKGIEEA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +E      E IVV EIPYQVNKA ++EKIA+LV+EK+I  I+ + 
Sbjct: 244 YKTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAIT 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D SD+ G R+ I++KR A  +V+LN LY  T LQ  F +N+VAL+  +P+   L  +++A
Sbjct: 304 DLSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEA 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT Y L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPETA+REL+ +
Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQ 423

Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            W    + D++      +             DG  YL+EVQ +AIL+LRL +LT LG D+
Sbjct: 424 PWKLGHVADMLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED 
Sbjct: 484 ILDEYQKLLEVIGELLYILRSPERLMEVIREELEQIREQFNDPRRTEITASSGDINLEDL 543

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S    ++EDF+  L + +TH ++L F
Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G +Y  KV++LP  S  +RG+ ++NIL L++ ERIT I+P    E    + +VV AT
Sbjct: 604 SSRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYEE---DKFVVMAT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA
Sbjct: 661 AGGIVKKISLTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESA 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R + GVRGI LA           L  D   DE                 + E+I
Sbjct: 721 VRAMG-RAATGVRGIKLA-----------LTNDLSDDESAV--------------EIEDI 754

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +   +D  ++ N+ +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 755 SDDNSDDILDLNVDKVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKV 814

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  VNEI +  R T+GV +  T +DE +V
Sbjct: 815 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVNEISVVGRNTQGVRLIRTTEDETLV 872

Query: 893 SVERIRESEIVDEAESTE 910
            ++R+ E +   E   +E
Sbjct: 873 GLQRVCEVDEEAEDFDSE 890


>gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 879

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/903 (45%), Positives = 573/903 (63%), Gaps = 68/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+                                              
Sbjct: 722 RGINLQGEDRVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V  
Sbjct: 737 --------IPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDE 846

Query: 905 EAE 907
           E +
Sbjct: 847 ELD 849


>gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895]
          Length = 878

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 574/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLKEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D V+S+ I     A                                      
Sbjct: 722 RGIKLAGEDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 878

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 571/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH
Sbjct: 486 AGLLHILGSADRLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D V+S+ +                                            
Sbjct: 722 RGIKLAGEDAVVSLIV-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V  
Sbjct: 738 ---------PRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 899

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/919 (45%), Positives = 593/919 (64%), Gaps = 43/919 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ +    +   + I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 7   MTDLV---QDTMHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+
Sbjct: 64  HEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSI 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  
Sbjct: 124 DGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A I+N +I +D LM  I GPDFPT A+I GR GI+ A
Sbjct: 184 GIAVGMATNIPPHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALINGRKGIEEA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +E      E IVV EIPYQVNKA ++EKIA+LV+EK++  I+ + 
Sbjct: 244 YKTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAIT 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D SD+ G R+ I++KR A  +V+LN LY  T LQ  F +N+VAL+  +P+   L  +++A
Sbjct: 304 DLSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEA 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT Y L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPE+A+R L+ +
Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQ 423

Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +W    +  ++      +             DG  YL+EVQ +AIL+LRL +LT LG D+
Sbjct: 424 AWELGHVSQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED 
Sbjct: 484 ILDEYKKLLDVIGELLHILRSPERLMEVIREELEQIREQFNDPRRTEITASSADINLEDL 543

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S    ++EDF+  L + +TH ++L F
Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G +Y  KV++LP  S  ARG+ ++NIL L++ ERIT I+P    E    + +VV AT
Sbjct: 604 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYEE---DKFVVMAT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+    +N+I+L +  G+ VRF  +A
Sbjct: 661 AGGIVKKIALTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENA 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R + GVRGI LA           L  D   DE                 D EEI
Sbjct: 721 VRAMG-RAATGVRGIKLA-----------LTNDLSDDESAV--------------DMEEI 754

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    + +++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 755 SDENTNDALDLNIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKV 814

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V ++DQI+L++D GTL+R  VNEI I  R T+GV +  T++ E +V
Sbjct: 815 SERN--GKVVAATQVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIRTSESETLV 872

Query: 893 SVERIRESEIVD-EAESTE 910
            ++R+ + +  D E++++E
Sbjct: 873 GLQRVCDVDEEDIESDASE 891


>gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 878

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/904 (44%), Positives = 574/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSAERLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D V+S+ I     A                                      
Sbjct: 722 RGIKLAGEDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
 gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
          Length = 903

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/891 (53%), Positives = 632/891 (70%), Gaps = 8/891 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G   NK Y KC   
Sbjct: 12  SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL+K
Sbjct: 72  VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A  LL D+ KDTVDF PNY     EP VL ARYPN+LVNG  GIAVGMAT IP HNLGE
Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+IDNPD+  + L++ I  PDFPTG +ILGR+G + AY  GRGS+VIR  +  E
Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLILGRSGARKAYTEGRGSVVIRCKTRTE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNKA M+E+IAE  REKRI  IA ++DESDR G RVVIELKR 
Sbjct: 252 EIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQL+R+T +Q  F+ NM+ALNG KPE  TL G L AF+ FRE+VV +RT + L
Sbjct: 312 ATPEVVLNQLFRFTPMQVSFACNMLALNGGKPETLTLRGFLTAFLDFREDVVAKRTAFEL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM+R W A +I   I LIDD 
Sbjct: 372 NKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLIDDP 431

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++ +  DGT  LS+ Q RAIL+LRL RLT LG  ++ +EL +L  +I+E LDIL SR R+
Sbjct: 432 THKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSRERI 491

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L I+  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 492 LSIVSDELREVRERHAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTQGGYIKRTALADFR 551

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGGKG SG  +++ED VT LF+ +THT +LFF++ G VYK K WRLP+G   +RGKA
Sbjct: 552 SQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSRGKA 611

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 612 IVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFTNVMRNGKIAMK 671

Query: 678 LDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L       +++   C++++D++L T  G+ +RFP++ +RVF+GR+S GVRGI L  GD+V
Sbjct: 672 LPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGVRGIRLQNGDKV 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SMA++ H +A  +ER+ Y+K     RR   G T+E  S   D    G +  +R  E+  
Sbjct: 732 VSMAVIRHFEASPEERVAYLK----MRRAQMGMTDETESDDEDQVEAGQLPLDRFAEMSA 787

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  +LT++ KG GK +SS+ + +  R G+G+ ATD  K    G +V+VFPV  +DQI+L
Sbjct: 788 AENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSATD--KAMRGGPIVSVFPVELDDQIML 845

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+++G  IRVPV+ I   SR+  GV +F+TAK E VVSV  I E    DE 
Sbjct: 846 VTNQGQSIRVPVDGISFRSRSAGGVRVFNTAKGEEVVSVAWIAEQADEDEP 896


>gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34]
 gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus
           metallidurans CH34]
          Length = 897

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/910 (41%), Positives = 562/910 (61%), Gaps = 59/910 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NPD  +D L+E++  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L AF++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +   I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L  GE+I  I+P  + ++     ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAE---HFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L+DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +G  VI+M +     A+ +  +              GD   + 
Sbjct: 719 RPMG-RQARGVRGMNLDEGQAVIAMLVAPAESAETESSVA------------EGDVSPVG 765

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S                         +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 766 S-------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 800

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  
Sbjct: 801 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 858

Query: 894 VERIRESEIV 903
           ++RI ES+  
Sbjct: 859 LQRIVESDAD 868



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 105/241 (43%), Gaps = 19/241 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        E  +   +  G VK+  L+ +   R+   G   V + + DF+    
Sbjct: 636 EKINVILPVRQFDAEHFIFMATARGTVKKTVLTDFSNPRKA--GIIAVDLDEGDFLIGAA 693

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +     QARG   +  ++L++G+ +  ++  P + +
Sbjct: 694 VTDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG---VRGMNLDEGQAVIAMLVAPAESA 750

Query: 642 SWNNLY----------VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVE 688
              +            V+ AT++G  +R  +S++ +  R   G IA++       +++  
Sbjct: 751 ETESSVAEGDVSPVGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGRVVAAA 810

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             + E++I+L T  G  +R  ++ IR    R + GV  I++ +G ++  +  ++ +DAD 
Sbjct: 811 LVSPEDEIMLITTGGVLIRTRVAEIREMG-RATQGVTLINVDEGTKLSGLQRIVESDADN 869

Query: 749 D 749
            
Sbjct: 870 G 870


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/911 (43%), Positives = 555/911 (60%), Gaps = 70/911 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   K    VS+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK
Sbjct: 2   EAFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP+V+ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMARIGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D C+A+++N ++ +D L++++ GPDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLGEIIDACLALLNNAEVTIDELIDLVPGPDFPTAGIIYGVAGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +RG +H E       R+ I++ E+PYQVNK  +LEKI ELV EKRI  I+DLRDESD+ G
Sbjct: 242 MRGRTHFEDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRG  A+V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R E
Sbjct: 302 MRVVIELKRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT + L KAR+RAH+  GLA+A+ N+DE++ +I+ SP P  ARR LM R W +  +
Sbjct: 362 VLTRRTVFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTV 421

Query: 428 KDLIDLIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++      +      G  Y        LSE Q +AILELRL RLTGL RD I  +   
Sbjct: 422 AEMLQRAALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I + +DIL+   R+  +I +EL +++ +    RR+ IV    D+  ED I   DMV
Sbjct: 482 LLARIADLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K  PL+ YRAQRRGG+G+    M+ +DFV  LF+ +TH  +L F++ G VY
Sbjct: 542 VTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G+  +RGK ++N+    +GE+I+ I+P  E     ++ Y+   T  G V++
Sbjct: 602 WLKVYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKE---FTDDRYIFMCTAQGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LSDF    ++G IA+ LD  D ++  E      D++L +  G+ V F    +R    R
Sbjct: 659 TPLSDFSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ LA   QV+S+ +  +                                    
Sbjct: 718 TARGVRGMRLADQQQVLSLLVADND----------------------------------- 742

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +Q +L  +E GFGKRT   DFR S R  +G+ A   S+ N  G
Sbjct: 743 -----------------QQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V D D+I+L++  G LIR  V EIR   RAT+GV + +    E++  +E+I E
Sbjct: 784 RVVAARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGEKLAGLEKIVE 843

Query: 900 SEIVDEAESTE 910
           +E  D+AE  +
Sbjct: 844 TE--DDAEIAD 852


>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
 gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
          Length = 877

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/930 (44%), Positives = 575/930 (61%), Gaps = 92/930 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  
Sbjct: 186 NLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQ 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+
Sbjct: 246 ADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D V+ +IR +P P  A+  L+ + W+   +  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLE 425

Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              DS+              DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++
Sbjct: 426 RAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++EL ++K + + PRRT I E   D+  ED I  E++VVT+S
Sbjct: 486 IAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 546 HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L 
Sbjct: 606 YQLPEASRGARGRPIINLLPLEQDERITAILPVREYEE---GKFVFMATASGTVKKTPLQ 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   +G IA+ L+  DE++ V+     N+ +L +  G+ VRF    +R    R + G
Sbjct: 663 DFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMG-RTATG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L   D+V+S+                                             
Sbjct: 722 VRGMKLVDDDKVVSLI-------------------------------------------- 737

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV+E G+GKRT   ++   NR+ +G+ +  VS+ N  G +V 
Sbjct: 738 ---------IPRGEGDILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERN--GKVVG 786

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER------- 896
              V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T +DE VV ++R       
Sbjct: 787 AIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVVGLQRVEDEDDA 846

Query: 897 ----------------IRESEIVDEAESTE 910
                           + ESE  D+A+S E
Sbjct: 847 LDDDEVDEMISDNISDVPESEPTDDADSEE 876



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 22/268 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+                 V   +  G VK+ PL  +   R    G   V + D
Sbjct: 629 DERITAILP-------VREYEEGKFVFMATASGTVKKTPLQDFSRPRSA--GIIAVNLND 679

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +  + +       + FS+ G V +     +      A G  +  +  ++  + ++ I
Sbjct: 680 GDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGRTATG--VRGMKLVDDDKVVSLI 737

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETC 690
           +P  E +       ++  T++G  +R   S++   NR+  G I++K+     +++     
Sbjct: 738 IPRGEGD-------ILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQV 790

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            + + I++ T  G  VR  +S + +   RN+ GV  I   + + V+ +  V   D   D+
Sbjct: 791 EETDQIMMITNAGTLVRTRVSEVSIVG-RNTQGVTLIRTTEDELVVGLQRVEDEDDALDD 849

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKND 778
                        +   +  +    + +
Sbjct: 850 DEVDEMISDNISDVPESEPTDDADSEEE 877


>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
 gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
          Length = 883

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/930 (44%), Positives = 575/930 (61%), Gaps = 92/930 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  
Sbjct: 192 NLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQ 251

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+
Sbjct: 252 ADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVV 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RR
Sbjct: 312 EIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D V+ +IR +P P  A+  L+ + W+   +  +++
Sbjct: 372 TIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLE 431

Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              DS+              DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++
Sbjct: 432 RAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQ 491

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++EL ++K + + PRRT I E   D+  ED I  E++VVT+S
Sbjct: 492 IAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLS 551

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 552 HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 611

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L 
Sbjct: 612 YQLPEASRGARGRPIINLLPLEQDERITAILPVREYEE---GKFVFMATASGTVKKTPLQ 668

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   +G IA+ L+  DE++ V+     N+ +L +  G+ VRF    +R    R + G
Sbjct: 669 DFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMG-RTATG 727

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L   D+V+S+                                             
Sbjct: 728 VRGMKLVDDDKVVSLI-------------------------------------------- 743

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   E  ILTV+E G+GKRT   ++   NR+ +G+ +  VS+ N  G +V 
Sbjct: 744 ---------IPRGEGDILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERN--GKVVG 792

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER------- 896
              V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T +DE VV ++R       
Sbjct: 793 AIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVVGLQRVEDEDDA 852

Query: 897 ----------------IRESEIVDEAESTE 910
                           + ESE  D+A+S E
Sbjct: 853 LDDDEVDEMISDNISDVPESEPTDDADSEE 882



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 22/268 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+                 V   +  G VK+ PL  +   R    G   V + D
Sbjct: 635 DERITAILP-------VREYEEGKFVFMATASGTVKKTPLQDFSRPRSA--GIIAVNLND 685

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +  + +       + FS+ G V +     +      A G  +  +  ++  + ++ I
Sbjct: 686 GDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPMGRTATG--VRGMKLVDDDKVVSLI 743

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETC 690
           +P  E +       ++  T++G  +R   S++   NR+  G I++K+     +++     
Sbjct: 744 IPRGEGD-------ILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQV 796

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            + + I++ T  G  VR  +S + +   RN+ GV  I   + + V+ +  V   D   D+
Sbjct: 797 EETDQIMMITNAGTLVRTRVSEVSIVG-RNTQGVTLIRTTEDELVVGLQRVEDEDDALDD 855

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKND 778
                        +   +  +    + +
Sbjct: 856 DEVDEMISDNISDVPESEPTDDADSEEE 883


>gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163]
 gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163]
          Length = 879

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/903 (45%), Positives = 572/903 (63%), Gaps = 68/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ DI L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 GEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+                                              
Sbjct: 722 RGINLQGEDRVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V  
Sbjct: 737 --------IPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDE 846

Query: 905 EAE 907
           E +
Sbjct: 847 ELD 849


>gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
 gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
          Length = 877

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/904 (44%), Positives = 577/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D V+S+ I     A                                      
Sbjct: 722 RGIKLAENDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 104/271 (38%), Gaps = 23/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + + S    V+ FS+ G V + K   +      A G   +  + L + + + +
Sbjct: 678 EGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAENDSVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E +     ++  T++G  +R   +++   +R+  G I++K+      ++    
Sbjct: 735 LI-IPRGEGA-----ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDENVVGLQRVAEP-VDDE 846

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           E        +     I+ + +    +  D  
Sbjct: 847 ELDAIDGSAAEGDDDIAPEADTDDDIAEDEE 877


>gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
 gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
          Length = 900

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/907 (46%), Positives = 585/907 (64%), Gaps = 33/907 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +    +NK 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  + ++ LM  I GPDFPTGA+I GR GI++AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAIINGRKGIEDAYCTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +EKT  +REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R+W+  ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             +G  +LSE Q RAILELRL RLTGL  + I +E   L  
Sbjct: 423 LEAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILNSAERLMQVIREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P+ E    + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPKGE-FSTDKFIFMATASGIVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  I  SG I +KL   DE++ V+     ++I+L +  G+ VRF   A+R    R 
Sbjct: 662 CLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVRSMG-RT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D       +L  D +  E +   +  +     ++ + + + SL    +
Sbjct: 721 ATGVRGIKLATSD-------ILADDIEDTEIVEIEQEETEDNTAVNLNIDRVVSLVIPRA 773

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                 +            ILTV+E G+GKRT   ++ I +R+ KG+ +  V++ N  G 
Sbjct: 774 DIATSGD------------ILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERN--GK 819

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V++ DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E 
Sbjct: 820 VVAAVQVDELDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEKVVSLERLCEP 879

Query: 901 EIVDEAE 907
           E  +  E
Sbjct: 880 EEDESNE 886


>gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
 gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
          Length = 877

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/904 (44%), Positives = 577/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D V+S+ I     A                                      
Sbjct: 722 RGIKLAENDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 105/271 (38%), Gaps = 23/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + + S    V+ FS+ G V + K   +      A G   +  + L + + + +
Sbjct: 678 EGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAENDSVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E +     ++  T++G  +R   +++   +R+  G I++K+      ++    
Sbjct: 735 LI-IPRGEGA-----ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDENVVGLQRVAEP-VDDE 846

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           E       ++     I+ + +    +  D  
Sbjct: 847 ELDAIDGSVAEGDDDIAPEADTDDDIAEDEE 877


>gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
 gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
          Length = 907

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/912 (44%), Positives = 579/912 (63%), Gaps = 49/912 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   EIAREILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++S+R +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH LL DL KDTVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMSRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E++DGC+A+ID+  + +D LM  I GPDFPTG +I GR GI  AY TGRG I +
Sbjct: 183 PPHNMREIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGGIINGRAGILEAYRTGRGRIYV 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE      R+ I+VTE+PYQVNKA ++EKIAELV++KRI  IA+LRDESD++G R
Sbjct: 243 RARHTIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+KRG S DV++N L+ +T LQ++F +NMVAL+  +P+   L  IL+AFV  R EVV
Sbjct: 303 VVIEVKRGESGDVVVNNLFAHTQLQTVFGINMVALDNGQPKILNLKEILEAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDR H+L GLA+A++N+DEV+ +I+ SP+   A+ +L+ R+W    + D
Sbjct: 363 TRRTLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTD 422

Query: 430 LIDLID---------DSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +++            +  Y +        LS  Q +AILELRL RLTGL  + + +E  S
Sbjct: 423 MLERAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLS 482

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E  +IL+S  RLL +I++EL +++D+    R+T I    LD+  ED I  EDMV
Sbjct: 483 ILKRIAELNEILASPERLLDVIREELQAIRDQYGDERKTEIQASHLDLTIEDLINEEDMV 542

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S  GY K  PLS Y+AQRRGG+G+S   M+DED +  L + STH +VL FS+ G VY
Sbjct: 543 VTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRGKVY 602

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P  S  +RGK LIN+L L++GE I  I+P  E      + Y+ FAT  G V+R
Sbjct: 603 WLKVYEMPNASRGSRGKPLINLLPLDEGEAINAILPVREYRE---DSYIFFATAKGTVKR 659

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F +    G IA+ L+  D ++     +  +  +L +  G+ +RF    +R    R
Sbjct: 660 TSLEQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAMG-R 718

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ L  G +VIS+ I                                 SL  D+
Sbjct: 719 TARGVRGMRLQGGAEVISLIIPQ-------------------------------SLTIDA 747

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  E   + +   + +ILT SE G+GKRT   +F +  R G+G+ A   S+ N  G
Sbjct: 748 ETDDDAEERPVETVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRN--G 805

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ALVA   V D+D+++L++DKGTL+R  V E+ ++SR T+GV +  T + E +V+  R+ E
Sbjct: 806 ALVAAIQVRDSDEMMLITDKGTLVRTRVGEVSVSSRNTQGVTLIRTGEGEHLVATVRVDE 865

Query: 900 SE-IVDEAESTE 910
            + + D+A   E
Sbjct: 866 PDAVEDDALDAE 877


>gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25]
 gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25]
          Length = 906

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/934 (44%), Positives = 575/934 (61%), Gaps = 95/934 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+   E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDE---FSEDKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    EN+I+L +K G+ VRF  +              
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA+ DQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  ILTV+E G+GKRT+  ++    
Sbjct: 761 -------------------------------VPSHEGDILTVTENGYGKRTALSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRESEIV-----DEAESTE 910
           +  TA+DE VV ++RI E +       +EAE+ E
Sbjct: 848 LIRTAEDESVVGLQRIEEVDDEELPAGEEAEALE 881



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 168/461 (36%), Gaps = 58/461 (12%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R       ARR  
Sbjct: 462 LHKLTGLEHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVR--DGFGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    + +   +K  +L    RT     IV        E +
Sbjct: 575 ----DHIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +   D    +  +   +  G VK+ PL+ + A  R   G   V +R++D +  + I +
Sbjct: 631 TAILRVDEFSEDKFIFMATGDGTVKKTPLNQF-ANVRS-NGLIAVNLREDDSLIGVDITN 688

Query: 585 THTSVLFFSSLGFVYKEK-VWRLPIGSPQAR------GKALINI---------------L 622
               ++ FS  G V + K    +P+     +      G+  I                 +
Sbjct: 689 GENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGM 748

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
            L + +++ +++         +   ++  T++G  +R  LS++    R   G +++K+  
Sbjct: 749 KLAENDQVVSLIV------PSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSE 802

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
               ++      + +++++ T  G  VR  +  +     RN+ GV  I  A+ + V+ + 
Sbjct: 803 RNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVG-RNTQGVTLIRTAEDESVVGLQ 861

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            +   D +        + + +       DT E  +  +   
Sbjct: 862 RIEEVDDEELPAGEEAEALESTDENTQQDTPEAPAADDAEE 902


>gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB]
 gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB]
          Length = 890

 Score =  843 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I+N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLREVINGCLAYIENEDISIEELMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILS   RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILSDADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIRLAEGDRVVSLIVPREEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------IMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEE 846

Query: 905 EAES 908
           E +S
Sbjct: 847 ELDS 850


>gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22]
 gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22]
          Length = 877

 Score =  843 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/904 (44%), Positives = 577/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D V+S+ I     A                                      
Sbjct: 722 RGIKLAENDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 105/271 (38%), Gaps = 23/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + + S    V+ FS+ G V + K   +      A G   +  + L + + + +
Sbjct: 678 EGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAENDSVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E +     ++  T++G  +R   +++   +R+  G I++K+      ++    
Sbjct: 735 LI-IPRGEGA-----ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDENVVGLQRVAEP-VDDE 846

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           E       ++     I+ + +    +  D  
Sbjct: 847 ELDAIDGSVAEGDDDIAPEADTDDDIAEDEE 877


>gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E]
 gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A
 gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii]
 gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
 gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22]
 gi|1093608|prf||2104274A DNA gyrase
          Length = 905

 Score =  843 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/888 (50%), Positives = 634/888 (71%), Gaps = 8/888 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH L++D+ K TV F  NYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGKAEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IA++N+DE++ II+ S +   A++ELM R W   DI  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI L+DD    +   GT+  +EVQ +AILE++L RLT + ++ +  +L  L  +I E L+
Sbjct: 423 LIKLVDDKV-ILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+SR+RLL I+K+EL+ VK+E  +PR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILASRTRLLEILKEELIKVKEEFASPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NILSL + E IT IMP PE++  W++L ++FAT  GN+RR+ L DF +I 
Sbjct: 602 NPQGKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++R+   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++   ++  ++R  Y+     +R  I+   E      N   +  N++ + 
Sbjct: 722 AKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEE-----FNLEELGVNLNADS 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 ILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D+++L+++ G LIR  +  +RI  R T GV++F    DE+VVSV  I
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882


>gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 877

 Score =  843 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D V+S+ I     A                                      
Sbjct: 722 RGIKLAENDSVVSLIIPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V  
Sbjct: 744 ---------------ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 846

Query: 905 EAES 908
           E ++
Sbjct: 847 ELDA 850



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 104/271 (38%), Gaps = 23/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + + S    V+ FS+ G V + K   +      A G   +  + L + + + +
Sbjct: 678 EGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAENDSVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E +     ++  T++G  +R   +++   +R+  G I++K+      ++    
Sbjct: 735 LI-IPRGEGA-----ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDENVVGLQRVAEP-VDDE 846

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           E        +     I+ + +    +  D  
Sbjct: 847 ELDAIDGSAAEGDDDIAPEADTDDDIAEDEE 877


>gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
 gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
          Length = 906

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/934 (44%), Positives = 575/934 (61%), Gaps = 95/934 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+   E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDE---FSEDKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    EN+I+L +K G+ VRF  +              
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA+ DQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  ILTV+E G+GKRT+  ++    
Sbjct: 761 -------------------------------VPSHEGDILTVTENGYGKRTALSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRESEI-----VDEAESTE 910
           +  TA+DE VV ++RI E +       ++AE+ E
Sbjct: 848 LIRTAEDESVVGLQRIEEVDDEELPADEDAEALE 881



 Score = 71.5 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 167/461 (36%), Gaps = 58/461 (12%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R       ARR  
Sbjct: 462 LHKLTGLEHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVR--DGFGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    + +   +K  +L    RT     IV        E +
Sbjct: 575 ----DHIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +   D    +  +   +  G VK+ PL+ + A  R   G   V +R++D +  + I +
Sbjct: 631 TAILRVDEFSEDKFIFMATGDGTVKKTPLNQF-ANVRS-NGLIAVNLREDDSLIGVDITN 688

Query: 585 THTSVLFFSSLGFVYKEK-VWRLPIGSPQAR------GKALINI---------------L 622
               ++ FS  G V + K    +P+     +      G+  I                 +
Sbjct: 689 GENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGM 748

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
            L + +++ +++         +   ++  T++G  +R  LS++    R   G +++K+  
Sbjct: 749 KLAENDQVVSLIV------PSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSE 802

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
               ++      + +++++ T  G  VR  +  +     RN+ GV  I  A+ + V+ + 
Sbjct: 803 RNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVG-RNTQGVTLIRTAEDESVVGLQ 861

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            +   D +        + + +       D  E  +  +   
Sbjct: 862 RIEEVDDEELPADEDAEALESTGENTQQDASEAPAADDAEE 902


>gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E]
 gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 888

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/906 (46%), Positives = 586/906 (64%), Gaps = 40/906 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G  +NK YVK
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNKSYVK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+Q+    LL DL K+TVDF PNYDG    P VL  + P++LVNG  GIAVGMATNIP H
Sbjct: 126 RMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A +DN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     REQI++TEIPYQVNKA ++EKI ELVR+K+I  IA + D S+++G R+ I+
Sbjct: 246 ASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIRLEID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEAFVKHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W+  ++  +++ 
Sbjct: 366 VYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAPMLEA 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +LSE Q RAILELRL RLTGL  + I  E + + ++I 
Sbjct: 426 AGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEILLQIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL  +I++EL  VK   +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELIRILTSSVRLNEVIREELELVKSTYNDERRTEITAASGDINLEDLIAQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++NIL L   ERIT I+P     S   + +VV AT  G V++  L++F
Sbjct: 606 LPEASRGARGRPIVNILPLEDNERITAILPVA---SYDEDKFVVMATACGIVKKTALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R    R + GVR
Sbjct: 663 SRPRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVRAMG-RTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA           L  D   DE                 + EEI+    + +++ NI
Sbjct: 722 GIKLA-----------LTNDISDDESAV--------------EIEEISDDNAEDTLDLNI 756

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILT ++ G+GKRT+  ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 757 DKVVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERN--GKVVAAT 814

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD- 904
            V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+ER+ E E  + 
Sbjct: 815 QVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVAEPEEDEF 874

Query: 905 EAESTE 910
           +AES E
Sbjct: 875 DAESPE 880


>gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 934

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/912 (43%), Positives = 577/912 (63%), Gaps = 26/912 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   REITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V+GC+A+I+N ++ +D LM  I GPDFPTGA+I GR GI  AY TGRGS+ +R  
Sbjct: 186 NLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V E+PYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T LQ+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+ +L+ R W   ++  +++
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  +L+E Q +AIL+LRL +LTGL    I  E  SL   I
Sbjct: 426 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+SH
Sbjct: 486 AELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLITPEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 QGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L +GERIT I+P  E     ++ YV FAT  G V++  LS 
Sbjct: 606 QLPEASRGARGRPIINLLPLEEGERITAILPVKEYA---DDKYVFFATADGTVKKTSLSA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   + R  A    V  
Sbjct: 663 FSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAADADV-- 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                   + VI          + +         + +     G T          + +  
Sbjct: 721 SDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKV 780

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +S      +   E  ILT +E G+GKRT+  ++   +R  +G+R+  V + N  G ++  
Sbjct: 781 VSLI----VPRGEGAILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERN--GKVIDA 834

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI+L+++ GTL+R  V+E+ I  R T GV +  T +DE VV ++RI ES+  +
Sbjct: 835 IQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESDEEE 894

Query: 905 ------EAESTE 910
                 + E +E
Sbjct: 895 NDVMAIDGEVSE 906



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 80/183 (43%), Gaps = 13/183 (7%)

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A G   I +L+   G+++ +++  P  E +     ++ AT++G  +R  L+++   
Sbjct: 762 MGRTAGGVRGIRLLN---GDKVVSLI-VPRGEGA-----ILTATENGYGKRTALTEYPTK 812

Query: 669 NRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +R   G  ++K+D    +++        + I+L T  G  VR  +S + +   RN+ GVR
Sbjct: 813 SRGTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGTLVRTRVSEVSIIG-RNTGGVR 871

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I   + + V+ +  +  +D + ++ +     +S                   S+ EG  
Sbjct: 872 LIRTGEDETVVGLQRIAESDEEENDVMAIDGEVSEGTDTAPDAGSAAAGSFEGSTEEGAA 931

Query: 786 SEE 788
           S+E
Sbjct: 932 SDE 934


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/913 (44%), Positives = 577/913 (63%), Gaps = 79/913 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  
Sbjct: 192 NLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQ 251

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+
Sbjct: 252 ADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVV 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RR
Sbjct: 312 EIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIISAFIRHRREVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KARDRAH+L  LA+A+AN+D V+ +IR +PNP  A+  L+ + W+   +  +++
Sbjct: 372 TIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIAQPWDLGSVSTMLE 431

Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              DS+              DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++
Sbjct: 432 RAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRDLLLQ 491

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++EL ++KD+ + PRRT I E   D+  ED I  E++VVT+S
Sbjct: 492 IAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADINIEDLINEENVVVTLS 551

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 552 HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 611

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L 
Sbjct: 612 YQLPEASRGARGRPIINLLPLEQNERITAILPVREYEE---GKFVFMATASGTVKKTPLQ 668

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF    +R    R + G
Sbjct: 669 DFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKVVRFAEDCVRPMG-RTATG 727

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L+  D+V+S+                                             
Sbjct: 728 VRGMKLSDDDKVVSLI-------------------------------------------- 743

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   +  ILTV+E G+GKRT+  ++   NR+ +G+ +  VS+ N  G +V 
Sbjct: 744 ---------IPRGDGDILTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERN--GKVVG 792

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899
              V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T + E VV ++R+ +    
Sbjct: 793 AIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGELVVGLQRVEDEDDA 852

Query: 900 ------SEIVDEA 906
                 +E++DE 
Sbjct: 853 LDDDEVNEVIDEE 865



 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 100/258 (38%), Gaps = 15/258 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PL  +   R    G   V + + D +  + 
Sbjct: 636 ERITAILPVREYEEGKFVFMATASGTVKKTPLQDFSRPRSA--GIIAVNLNEGDELIGVD 693

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +  +   V+ FS+ G V +     +      A G   +  + L+  +++ +++    D  
Sbjct: 694 LTDSTNEVMLFSADGKVVRFAEDCVRPMGRTATG---VRGMKLSDDDKVVSLIIPRGDGD 750

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T++G  +R   S++   NR+  G I++K+     +++      + + I++
Sbjct: 751 ------ILTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMM 804

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S + +   RN+ GV  I   +G+ V+ +  V   D   D+        
Sbjct: 805 ITNAGTLVRTRVSEVSIVG-RNTQGVTLIRTTEGELVVGLQRVEDEDDALDDDEVNEVID 863

Query: 759 SAQRRLISGDTEEITSLK 776
                    D  +  + +
Sbjct: 864 EELSEAPDSDLADDANEE 881


>gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
 gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
          Length = 886

 Score =  841 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/896 (45%), Positives = 570/896 (63%), Gaps = 68/896 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLAEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILPLKDILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LA+A+AN+D ++ +IR  P P  A+  L+ RSW    +  ++D
Sbjct: 366 TIFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAMLD 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +   L+ +I++EL+++K++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIRILQNPDCLMEVIREELVAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSRGRMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLESNERITAILPVREYEE---GRHVFMATASGTVKKTSLIE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+LA+GD+V+S+ +                                            
Sbjct: 722 RGINLAEGDRVVSLIV-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 738 ---------PRGEGPILTVTQHGYGKRTAQAEYPTKSRATQGVISIKVSERN--GEVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V+D DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++ + E 
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAQDEHVVGLQCVAEQ 842



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 105/267 (39%), Gaps = 17/267 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L  +   R    G   V + D D +  + 
Sbjct: 629 ERITAILPVREYEEGRHVFMATASGTVKKTSLIEFSRPRSA--GIIAVNLNDGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS+ G V +    ++      A G   +  ++L +G+R+ +++       
Sbjct: 687 LTDGSNEVMLFSAYGKVVRFPENQVRSMGRTATG---VRGINLAEGDRVVSLIV------ 737

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T+HG  +R   +++   +R+  G I++K+     E++        + I++
Sbjct: 738 PRGEGPILTVTQHGYGKRTAQAEYPTKSRATQGVISIKVSERNGEVVGAVQVDDCDQIMM 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V     D D         
Sbjct: 798 ITDAGTLVRTRVSEVSIVG-RNTQGVTLIRTAQDEHVVGLQCVAEQVDDDDLDSVVSPDA 856

Query: 759 SAQRRLISGDTEEIT--SLKNDSSVEG 783
            A   L+  D  +     ++ D  V+G
Sbjct: 857 LADDSLVDADDADEADNGVEGDDDVDG 883


>gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z]
 gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z]
          Length = 890

 Score =  841 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/908 (46%), Positives = 583/908 (64%), Gaps = 39/908 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT VSI DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   NK 
Sbjct: 3   ELSQDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A IDN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I      REQIVVTEIPYQVNKA ++EKI EL+REK+I  I+ + D S+++G R+
Sbjct: 243 RAKAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRL 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV 
Sbjct: 303 EIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPKLFNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPM 422

Query: 431 ID-------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++         DD     G  +G  YLSE Q RAILELRL RLTGL  + I +E   + +
Sbjct: 423 LEAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L IL+S  RL  +I++EL  VK   +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 QIGEYLHILTSIERLREVIREELELVKTNFNDARRTEITTASSDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PL+ Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y  K
Sbjct: 543 SHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYWLK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  ARG+ ++NIL L + ERIT I+P     S   + +V+ AT  G V++  L
Sbjct: 603 VYQLPEASRGARGRPIVNILPLEENERITAILPVA---SYDEDKFVLMATAGGIVKKTAL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           ++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R    R + 
Sbjct: 660 TEFSRPRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LA           L  D   +E                 + EE++   +  S++
Sbjct: 719 GVRGIKLA-----------LTNDLSDEESAV--------------EIEEVSEDNSQESLD 753

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +V
Sbjct: 754 LNIDKVVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVV 811

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V + DQI+L++D GTL+R  V E+ +  R T+GV +  TA+DE+VVS+ER+ E + 
Sbjct: 812 AATQVEEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAEDEQVVSLERVAEPDD 871

Query: 903 VDEAESTE 910
             + E  E
Sbjct: 872 EFDGEDVE 879


>gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
 gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 879

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/903 (44%), Positives = 572/903 (63%), Gaps = 68/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ +I L+ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI
Sbjct: 426 RAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+                                              
Sbjct: 722 RGINLQGEDRVVSLI--------------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V  
Sbjct: 737 --------IPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDE 846

Query: 905 EAE 907
           E +
Sbjct: 847 ELD 849


>gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
 gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 901

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/891 (52%), Positives = 624/891 (70%), Gaps = 21/891 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E G++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    +
Sbjct: 2   QPSEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ R
Sbjct: 62  PYKKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL+DL KDTVDF+PNYD S +EP VL AR+PN+LVNG GGIAVGMATN
Sbjct: 122 YTEARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D  +A+IDNP I L+ LM I+ GPDFPTGA++LG+ G ++AYATGRGSI+
Sbjct: 182 IPPHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMMLGQGGARSAYATGRGSIM 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+   DR+ IV+T IP+QV K+ ++EKIAE  R+KRI  +AD+RDES+R+G R
Sbjct: 242 MRSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+A+V+LNQL+R+T  QS F  NM+A+ G +PE   L  IL AF+ FREEV+
Sbjct: 302 VVIELKRDATAEVVLNQLWRHTPAQSSFPANMLAIRGGRPEMMGLKDILSAFIIFREEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KARDRAH+L+GL +AV+NLDEVVRIIR S +P  AR  L+ R W   DI  
Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I L++     +    T  LSEVQ +AIL+LRL RLT LGRD+I  EL  L  EI+E L 
Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+ R +L G++++EL++V+DE  TPRRT +      ++DED I RE+MVVTV+  GY+K
Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATPRRTLLAPAADGIDDEDLIEREEMVVTVTMDGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PL+ +RAQRRGGKGR+G+  +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G
Sbjct: 542 RTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRMKVWRLPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            P  RG+ +IN+L L QGE I+T++P PEDES W  L+V+FAT  G+VRRN +  F  + 
Sbjct: 602 GPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNSMDAFTNVP 661

Query: 670 RSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +GKIAMK    D  D ++ V    + +D+LL T+ G+ +RF    +R F  RNS GVRG
Sbjct: 662 SNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRG 721

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + LA+GD+VIS++I+       DER  Y++                 +   D+  E  + 
Sbjct: 722 MRLAEGDEVISLSILHRVGTTGDEREAYLR----------------AAPWKDNENEPTLP 765

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            ER  EL  +EQFILTV   G+GK +S+Y++R + R G+GI  T++  I   G +VA FP
Sbjct: 766 AERMAELAAREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIARNGPVVASFP 823

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                Q++LV+D+  LIR+ ++ +RI  R + GV +F  A+ E VVS   I
Sbjct: 824 ATQAHQLMLVTDQAKLIRMGLDSLRIIGRGSAGVRLFDVAEGEHVVSAALI 874


>gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
 gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
          Length = 868

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/870 (52%), Positives = 614/870 (70%), Gaps = 15/870 (1%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AI
Sbjct: 1   MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF
Sbjct: 61  YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG  QEP VL AR+PN+LVNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  
Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           + L+E + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E+   DR  IVV EIPY
Sbjct: 181 EQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA+M+EKIAE VREKRI  ++ ++DESDR G RVV+ELKR A+ +V+LNQL+R++ +
Sbjct: 241 QVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSPM 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+A
Sbjct: 301 QTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           V+N+DEVV  IR S +   AR++LM R W ASDI   I LIDD ++ +  D T  LSE Q
Sbjct: 361 VSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSETQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            RAILELRL RLT +G  ++ +EL  L  +IKE LDILSSR R++ II  EL  V+++  
Sbjct: 421 ARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQFA 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++
Sbjct: 481 VPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKE 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           ED VT+LF+ +THT +LFF++ G VYK K WRLP      +GKA++NIL +  G  I  I
Sbjct: 541 EDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETC 690
           MP    ++ W +L +VFAT  G VRRN+LSDF  +  +GKIAMK +      ++++   C
Sbjct: 601 MPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHAETKLINARIC 660

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++E+D++L T  G+ +RFP + +RVF  RNSVGVRGI L  G +V+SM++V H DA+  E
Sbjct: 661 SEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGAEVVSMSVVRHFDAEPWE 720

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R  ++K      R       +++  +     EG +SE+R QE+      ++T+++ G G 
Sbjct: 721 RSAFIK------RFRGELGNDVSDEETSEENEGALSEDRYQEMLAANDLLVTINKAGAGN 774

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            TS++D+R+S R G+G+ A       + G +VA FPV   DQI+L + KG  IRVPV+ I
Sbjct: 775 LTSAHDYRVSGRGGQGVGAM------KGGEIVATFPVTLEDQIMLATSKGQSIRVPVDGI 828

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900
              SR+  GV +F+T K E VVSV  I E+
Sbjct: 829 SFRSRSAGGVRVFNTGKGEEVVSVAWIAEN 858


>gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
 gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
          Length = 910

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/910 (51%), Positives = 623/910 (68%), Gaps = 23/910 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +D      I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETALADPS---DISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NK Y K ARI G+V+GKYHPHG++AIY ALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K  + LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A IDN  I +D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR  IV+T IPYQV K  ++EKIAE  ++KRI  I+D+R
Sbjct: 238 YHTGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   +  I++A
Sbjct: 298 DESSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   + L++     +G D    LS+ Q RAIL+LRL RLT LGRD+I NEL  L
Sbjct: 418 DWPVAEIAPYLKLVEAIETEVGGDS-YRLSDTQVRAILDLRLHRLTALGRDEIGNELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL  R +L  ++++E  +++ +  TPR + I      ++DED I RE+MVV
Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIDDEDLIEREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L+ GE I T++P PEDE SW +L+V+FAT +G VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  I  +GKIAM+ D    D ++ V   T+E+D+LL T+ G+ +RF  + +R F  
Sbjct: 657 SMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRG++L K D+VIS++I+  + A+ +ER  Y++                   K +
Sbjct: 717 RTSTGVRGMTLKKDDEVISLSILHRSGANQEERDDYLRFAPW---------------KAE 761

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +S ER  EL  KEQFILTV   G+GK +S+YD+R + R G+GI  T++  I   
Sbjct: 762 KEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGI--TNIDNIGRN 819

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP    D ++LV+D+  LIR+ +  +R+  R++ GV +F+ + DE VVS  +I 
Sbjct: 820 GPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 879

Query: 899 ESEIVDEAES 908
           ES+   E  +
Sbjct: 880 ESDEETEVST 889


>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
 gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
          Length = 889

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/910 (42%), Positives = 560/910 (61%), Gaps = 65/910 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +  QVI+M +     A                   SG    +T
Sbjct: 719 RPMG-RQARGVRGMNLEENQQVIAMLVAPAETAG--------------EGAQSGAGSVLT 763

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + +N                             G+GKRT   ++    R  KG+ A   S
Sbjct: 764 ATEN-----------------------------GYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852

Query: 894 VERIRESEIV 903
           ++R+ ES+  
Sbjct: 853 LQRVMESDAE 862


>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
 gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
          Length = 887

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/903 (44%), Positives = 573/903 (63%), Gaps = 68/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+
Sbjct: 246 GEVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+ANLD ++ +IR + NP  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIRILESSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATACGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAMG-RTASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+ D+V+S+ +     A                                      
Sbjct: 722 RGIKLAENDRVVSLIVPQEEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++  
Sbjct: 744 ---------------IMTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERN--GPVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEE 846

Query: 905 EAE 907
           E +
Sbjct: 847 ELD 849



 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 115/279 (41%), Gaps = 23/279 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+      E  +       +   +  G VK+  L+ +   R    G   V +R
Sbjct: 627 ANERITAILPVREYAEGWN-------IFMATACGTVKKTALTEFSRPRSA--GIIAVNLR 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           DED +  + + +     + FS+ G V +     +      A G   +  + L + +R+ +
Sbjct: 678 DEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAMGRTASG---VRGIKLAENDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P++E +     ++  T++G  +R   S++   +R+  G I++K+      ++    
Sbjct: 735 LI-VPQEEGA-----IMTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERNGPVIGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V    A+ +
Sbjct: 789 VVDSDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVILIRTAEDENVVGLQRVAEPVAE-E 846

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           E       ++     I+ + E   +   D+  E    +E
Sbjct: 847 ELDGIDGTVAEGDEDIAPEVEVDDAADVDNEDEAPEGDE 885


>gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
 gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
          Length = 934

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/919 (50%), Positives = 631/919 (68%), Gaps = 14/919 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE     ++     +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEI---PEQTPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 58  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL +AA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG  
Sbjct: 118 DGDSPAAMRYTEARLARAASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN GE++D  +A+I+ PD+ LD +++ + GPDFPTG  ILGR GI++A
Sbjct: 178 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDILQYVPGPDFPTGGTILGRAGIRSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS++IR  + +E    DR+ I+VTEIPYQVNKA + E+IAELVR K++  I+D+R
Sbjct: 238 FETGRGSVIIRARAEVEDIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P    L  +L+A
Sbjct: 298 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLQA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEV++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+  TAR  LM+R
Sbjct: 358 FIRFREEVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMER 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W+A DI  L+ LI D    +  D  ++L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 418 AWDAGDIAPLLALIHDEGNVV-VDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEV 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I++SR R + +++ EL +V+ E+ TPR T I +   D  DE  I    MVV
Sbjct: 477 ATRINELLEIIASRPRRMEVMRNELATVRAEIATPRATDIADYAGDQTDESLIEPGQMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D +   F   TH  VLFFSS G  Y+
Sbjct: 537 TITRDGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L     + IT ++P P+DE  W NL++VFAT  GNVRRN
Sbjct: 597 EKVWRLPEASPTAKGRALVNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+    RVFAG
Sbjct: 657 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI--------SGDTE 770
           R S GVRGI LA+GD+V S+ ++ H DA  +ER  Y++  +A+RR          +  T 
Sbjct: 717 RGSSGVRGIRLAEGDEVNSLCVLNHVDATVEERSAYLRIANARRRAENAAQNGEDTDTTP 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I S   +++ +  +  ER  E++  E+ +L VS  GFG+R+S+YD+R+S R G GI   
Sbjct: 777 DIASDDEETATDLALPPERVMEMEGAEEILLIVSNAGFGRRSSAYDYRVSGRGGLGINNM 836

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                    A+VA  PV     ++LV+D G LIR+PV++IRI SR   GV +F     E 
Sbjct: 837 SFPTARRGNAVVATLPVLAGTDVMLVTDAGRLIRLPVDQIRIMSRQASGVTLFRLNDTEE 896

Query: 891 VVSVERIRESEIVDEAEST 909
           V SV  + +    DE ++T
Sbjct: 897 VTSVFPVMDDGEDDETDAT 915



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 81/232 (34%), Gaps = 28/232 (12%)

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-----RG 615
           RG  G  G+ + + D V  L +++               +    R+     +A      G
Sbjct: 717 RGSSGVRGIRLAEGDEVNSLCVLN-------HVDATVEERSAYLRIANARRRAENAAQNG 769

Query: 616 KALINILSL-NQGERITTIMPFPED---ESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +       + +  E   T +  P +   E       ++  +  G  RR+   D+    R 
Sbjct: 770 EDTDTTPDIASDDEETATDLALPPERVMEMEGAEEILLIVSNAGFGRRSSAYDYRVSGRG 829

Query: 672 GKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           G     +        + +++        D++L T  G+ +R P+  IR+ + R + GV  
Sbjct: 830 GLGINNMSFPTARRGNAVVATLPVLAGTDVMLVTDAGRLIRLPVDQIRIMS-RQASGVTL 888

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             L   ++V S+  V+    D +         +      +G+T   T   +D
Sbjct: 889 FRLNDTEEVTSVFPVMDDGEDDE------TDATGTDENATGETGAATDGHDD 934


>gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336]
 gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336]
          Length = 881

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/899 (46%), Positives = 578/899 (64%), Gaps = 39/899 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK YVK 
Sbjct: 7   NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSSNTYNKAYVKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNIP HN
Sbjct: 127 MQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A +DN +I +D LM+ I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE     RE IVVTEIPYQVNKA ++EKIAELVREK+I  I+++RD S+++G RV +E+
Sbjct: 247 EIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVSNKEGNRVEVEV 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EV+ RRT 
Sbjct: 307 KRDAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKLLNLKQIIEAFVRHRREVITRRTV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ ++W   ++  ++   
Sbjct: 367 FELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAWELGNVATMLSAT 426

Query: 435 DDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              S    +        DG  YLS+ Q RAIL+LRL RLTGL  + I  E   + IEI +
Sbjct: 427 GVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIVTEYQEILIEIGK 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL+S  RL  ++ +EL  VK+E    RRT I     D+  ED I +ED++VT+SH G
Sbjct: 487 LLHILNSADRLKEVLCEELEKVKEEFGDARRTEITSASGDINLEDLITQEDVIVTLSHAG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS G +Y  KV++L
Sbjct: 547 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSRGRLYWLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++NIL L + ERIT I+P    E    + ++V AT  G V++  L++F 
Sbjct: 607 PQANRGARGRPIVNILPLQENERITAILPVAAYEE---DKFIVMATAGGLVKKIALTEFS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R    R + GVRG
Sbjct: 664 RPRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENAVRAMG-RLATGVRG 722

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA           L  D   DE                 + E+I+       ++ N+ 
Sbjct: 723 IKLA-----------LTNDISDDESAV--------------EIEDISDEDTKEPLDLNVD 757

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +     +   +  ILT ++ G+GKRT+  ++   +R+ KG+ +  VS  N  G +VA   
Sbjct: 758 KVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSDRN--GKVVAATQ 815

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V +NDQI+L++D GTL+R  V+EI I  R T+GV +  TA+ E+VVS+ER+ +++  +E
Sbjct: 816 VEENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIRTAETEQVVSLERVCDTDEDEE 874



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 25/251 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +V  +  G VK++ L+ +   R    G   + +RDED +  + 
Sbjct: 628 ERITAILPVAAYEEDKFIVMATAGGLVKKIALTEFSRPRSS--GIIALNLRDEDELIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA---RGKALINILSLNQGERITTIMPFPE 638
           I      ++ FSS G V + +   +      A   RG  L     ++  E    I    +
Sbjct: 686 ITDGTNEIMLFSSQGRVVRFEENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISD 745

Query: 639 DESS----------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +++                  N+  ++ AT++G  +R  LS++   +R+ K  + +   D
Sbjct: 746 EDTKEPLDLNVDKVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSD 805

Query: 683 ---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              ++++     + + I+L T  G  VR  +S I +   RN+ GVR I  A+ +QV+S+ 
Sbjct: 806 RNGKVVAATQVEENDQIMLITDAGTLVRTRVSEISIVG-RNTQGVRLIRTAETEQVVSLE 864

Query: 740 IVLHADADYDE 750
            V   D D + 
Sbjct: 865 RVCDTDEDEEN 875


>gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
 gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
          Length = 960

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/916 (44%), Positives = 577/916 (62%), Gaps = 29/916 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GIT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++ C+A+I NPD+ L+ +ME I GPDFPT  +I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGIINGKAGIEQAYRTGRGKVHIRARA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE     RE IVV E+PYQVNKA ++E+IAE V++K+I  I+ LRDESD+ G R+V+E+
Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q +F +NMVAL   +P+ FTL  +L AF+  R EVV RRT 
Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVALIDKQPKIFTLKEMLDAFLRHRREVVTRRTV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LAIA+AN+DE++ +I+ S     A++ L+ R W   D+  +++  
Sbjct: 367 FELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLERA 426

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +             +G+ +L+E+Q +AIL+LRL +LTGL  + I +E   L   I E
Sbjct: 427 GDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL++ SRLL +I +EL + KD     RRT I     D+  ED I RED+VVT+SH G
Sbjct: 487 LLYILNTPSRLLEVITEELQASKDAFGDERRTEISASSADINLEDLIEREDVVVTLSHEG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH  +L FSS G +Y  KV++L
Sbjct: 547 YVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGRLYWMKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARGK ++N+L L  GERIT I+P  + E   ++ +V  AT +G V++  LS + 
Sbjct: 607 PLASRQARGKPIVNLLPLQDGERITAILPVAQFE---DDKFVFMATANGTVKKTALSAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-- 724
           +    G IA+ L+  DE++ V+     NDI+L +  G+ VRF           +   V  
Sbjct: 664 KPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRFCEFEEIPVLDEDGNPVLE 723

Query: 725 --RGISLAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLISGDTE-----EITS 774
             + +   +G+ V+      ++  A    DE    +     +  L     +         
Sbjct: 724 EAKPVLDEEGNPVLDEEGNPVLEEAKPVLDEEGNPVLDEDGKPVLEEAKPKIKFKGVRPM 783

Query: 775 LKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +  + V G   EE  + + L     +  ILT +E GFGKRT+  ++   +R  KG+ + 
Sbjct: 784 GRTATGVRGIKLEEGQKVVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSI 843

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            VS+ N  G +V    V D D+++L+++ GTL+R   +E+ +  R T+GV +  T +DE 
Sbjct: 844 KVSERN--GKVVGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDEL 901

Query: 891 VVSVERIRESEIVDEA 906
           VV ++RI E E  + A
Sbjct: 902 VVGLQRIDEVEEDENA 917



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 79/187 (42%), Gaps = 13/187 (6%)

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A G   +  + L +G+++ +++         N+  ++ AT++G  +R  L ++   
Sbjct: 783 MGRTATG---VRGIKLEEGQKVVSLIV------PKNDGAILTATENGFGKRTALEEYPAK 833

Query: 669 NR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +R   G +++K+     +++        ++++L T  G  VR   S +    GRN+ GVR
Sbjct: 834 SRGTKGVVSIKVSERNGKVVGATQVLDGDELMLITNGGTLVRTRASEV-SMVGRNTQGVR 892

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I   + + V+ +  +   + D +  +   ++  A     +  T+   + +     +   
Sbjct: 893 LIRTGEDELVVGLQRIDEVEEDENAVVVDAENAEAATEAPATPTDATDATEATDVTDATD 952

Query: 786 SEERCQE 792
           S E   E
Sbjct: 953 SAEEATE 959


>gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253]
          Length = 878

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850


>gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469]
 gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia
           fergusonii ATCC 35469]
          Length = 878

 Score =  838 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850


>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
 gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
          Length = 894

 Score =  838 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKAEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 153/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  + A  R   G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++             V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLIV------PKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
 gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
          Length = 893

 Score =  838 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKAEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 152/449 (33%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  + A  R   G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++             V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLIV------PKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +          EE
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDGEEE 893


>gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 894

 Score =  838 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/913 (42%), Positives = 553/913 (60%), Gaps = 65/913 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++   WN+ 
Sbjct: 3   QFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K AH +L+D+ K+TVDF PNYDGS +EP VL AR PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRLAKIAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+VD C+ ++  P+  ++ LMEI+  PDFPT  +I G  G++  Y TGRG +V+
Sbjct: 183 PPHNLNEIVDACLHLLKVPEATIEELMEIVPAPDFPTAGIIYGLEGVREGYRTGRGRVVM 242

Query: 251 RGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H E      R+ I+V EIPYQVNK  +LE+IAELV EK+I  I+ ++DESD+ G R
Sbjct: 243 RAKCHFEDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L  F+  R EVV
Sbjct: 303 VVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPRLCNLKQLLDIFLEHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R HVL GLA+A+AN+DE +  I+ SP P  A+  LM ++W++S +++
Sbjct: 363 TRRTVYELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVRE 422

Query: 430 LIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           ++   ++               + Y + +DG   LSE Q + IL++RL RLTGL +D I 
Sbjct: 423 MLARAEESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKII 482

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDE 530
            E   +  +I + LDIL+   R+  I+ +EL +++ E        RR+ I    L++  E
Sbjct: 483 GEYREVMSQIADLLDILARPERVTAILVEELNALRQEFGQAKVGARRSVIERNALELGTE 542

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I   DMVVT+SH GY+K  PL+ YRAQRRGG+G+     +D+D++  LFI +TH  +L
Sbjct: 543 DLITPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWIL 602

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVV 649
            FS  G VY  KVW +P GS  +RGK ++N+  L  GE+IT ++P   E  S   + YV 
Sbjct: 603 CFSDRGRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVF 662

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            +T  G V++  L +F    ++G IA+ LD  D ++        +D++L +  G+ VRF 
Sbjct: 663 MSTALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFD 722

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R    RN+ GVRG++L  G  VI+M +                         S   
Sbjct: 723 EDDVRPMG-RNARGVRGMALEPGQNVIAMLV-------------------------SDRG 756

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +E   +  DS+                   +LT +E GFGKRT   ++    R  KG+ A
Sbjct: 757 DEARDVGEDSTRVS----------------VLTATENGFGKRTPIGEYTRHGRGTKGMIA 800

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S+ N  G +VA   V + D+I+L++D+G L+R  V EIR   RAT+GV + +     
Sbjct: 801 IQQSERN--GKVVAATLVRETDEIMLITDRGVLVRTRVAEIREMGRATQGVTLIALDDGA 858

Query: 890 RVVSVERIRESEI 902
           ++  ++RI E++ 
Sbjct: 859 KLSGLQRIVENDA 871


>gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227]
          Length = 878

 Score =  838 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + +S
Sbjct: 847 DLDS 850


>gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
 gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
          Length = 912

 Score =  838 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/919 (51%), Positives = 628/919 (68%), Gaps = 21/919 (2%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++     D ++E           SVSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPQPPDSDDEMRPERPVYDGPSVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M + G   +K Y K AR  G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILFAMHETGNTHDKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A +LL D+ KDTV+++ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+I+ PD+  + L++ + GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RTG + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA M+EKIAE VREK+I
Sbjct: 241 RTGARKAYLEGRGSVIIRAKTRVEEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+ ++DESDR G RVV+ELKR A+A+V++NQLYR+T LQ+ F  NM+ALNG +PE+ T
Sbjct: 301 EGISHVQDESDRNGVRVVVELKRDATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L  F+ FREEVV RRT YLL KAR+R+HVL GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRKFLTYFIDFREEVVARRTAYLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A DI   I LIDD ++T   DGT  LSE Q RAIL+LRL RLT +G  ++
Sbjct: 421 RSKLMTRRWPAQDILPYIALIDDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE LDIL SR R++ II  EL  V++    PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLDILGSRDRIMSIISDELREVRELFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +R+QRRGGKG SG  ++++D VT LF+ +THT +LFF+
Sbjct: 541 AREDMVVTVTQGGYIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP G   ++GKA+INIL + QG  I  I+P   DE  W+ L +VFAT 
Sbjct: 601 TDGMAYKLKTWRLPQGGRTSKGKAIINILPIPQGVSIAAILPIDRDEKDWSELQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN LSDF  +  +GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNALSDFTNVKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPS 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R+SVGVRG+ L   D+V+SM+++ H +A  DER+ Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRSSVGVRGVRLTGDDKVVSMSVIRHFNATSDERVAYLK----MRRAMAGLAD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +    + +++ E    +    ++   E  ILT++ +G GK +SS+D+ +  R G G++A 
Sbjct: 777 DAEIEEEETTGESVEID--YAKMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAM 834

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F+T K E 
Sbjct: 835 D--KAMRGGPIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEE 892

Query: 891 VVSVERIR---ESEIVDEA 906
           VVSV  I    E E  D+ 
Sbjct: 893 VVSVAWIADQGEEETGDDE 911


>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
 gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
          Length = 894

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKAEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 152/449 (33%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   V +RD+D +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIAVNLRDDDALIGVEITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 DIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++             V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLIV------PKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 930

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/900 (51%), Positives = 629/900 (69%), Gaps = 10/900 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 1   MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA
Sbjct: 61  GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           + FLLDD+ +DTVDF+PNYD S  EP VL A +PN+LVNG  GIAVGMATNIPTHN GEV
Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R  + IE+
Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR+ I++TEIPYQVNKA + EKIA+LVR K I  I+D+RDESDR G RVVIELKR A
Sbjct: 241 IRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LNQLYR+T LQ+ FS NM+AL+  KP    L  IL+AF+ FREEV++RR ++ LN
Sbjct: 301 TPDVVLNQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLN 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDR H+LVGL +AVAN+DEV+ +IR +P+  TAR  LM R W+AS++  L++LI D  
Sbjct: 361 KARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEG 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             I  DG + L+E Q R ILELRL RLTGL R+ I+ EL  +  +I E L I+ SR R +
Sbjct: 421 NVI-IDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRM 479

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++++ELL+ + E+ TPR T I + L D  DE  I    MVVT++  G++KR PL V+R+
Sbjct: 480 EVMREELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRS 539

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG+GR+    R +D +   F   TH  V+FFSS G  Y+ KVW LP  +P A+G+AL
Sbjct: 540 QNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRAL 599

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L     + IT ++P P+DE  W +L++ FAT  GNVRRN+LSDF  I  SG IAMKL
Sbjct: 600 VNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKL 659

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAGRNSVGVRGISLAKGDQVI 736
           D  D ++ V TC +  D+ L TK  +C+RF I+    RVFAGR S GVRGI L +GD VI
Sbjct: 660 DEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVI 719

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLI------SGDTEEITSLKNDSSVEGNISEERC 790
           S+ I+ H DA  +ER  Y++  +A+RR        S + E ++  +    + G++++ER 
Sbjct: 720 SLCILNHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERF 779

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +EL+ +E+ +LTV++ GFG+R+S+YD+R+S R G+GI     S       +V   P  D 
Sbjct: 780 EELEQQEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDG 839

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++LV+D G LIR+PV+++R+ SR   GV +F     E V+ V  + E +  +E ++ E
Sbjct: 840 TDVMLVTDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICVFPVLEDD-TEEGDTDE 898


>gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS]
 gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS]
          Length = 875

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4]
 gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4]
          Length = 907

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/916 (44%), Positives = 565/916 (61%), Gaps = 90/916 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLVEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDVYGDERRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L  GERIT I+P  E        ++  AT  G V++  L+ F
Sbjct: 606 LPHATRTARGKPIVNILPLEDGERITAILPVDE---FSPEKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF  +              
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA+ DQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  ILTV++ G+GKRT   ++    
Sbjct: 761 -------------------------------VPSNEGDILTVTQNGYGKRTELSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V+E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERI 897
           +  TA+DE VV ++RI
Sbjct: 848 LIRTAEDESVVGLQRI 863



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 175/468 (37%), Gaps = 60/468 (12%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R        RR  
Sbjct: 462 LHRLTGLEHEKILDEYKTLLEEIAELMHILASTERLMEVIREELETVR--DVYGDERRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-----DELDTPRRTRIV--------EGL 524
                 I+  L   +  + L    + +   +K         T R   IV        E +
Sbjct: 575 ----DFIERLLVANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEDGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +   D    E  +   +  G VK+ PL+ + A  R   G   V +RD+D +  + I +
Sbjct: 631 TAILPVDEFSPEKFIFMATGDGTVKKTPLNQF-ANVRS-NGLIAVNLRDDDSLIGVDITN 688

Query: 585 THTSVLFFSSLGFVYKEK-VWRLPIGSPQAR------GKALINI---------------L 622
             + ++ FS  G V + K    +P+   Q +      G+  I                 +
Sbjct: 689 GDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVLDENGQPEIKFKGVRPMGRTASGVRGM 748

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
            L + +++ +++         N   ++  T++G  +R +LS++    R   G +++K+  
Sbjct: 749 KLAENDQVVSLIV------PSNEGDILTVTQNGYGKRTELSEYPTKGRGTQGVVSIKVSE 802

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
               ++      + +++++ T  G  VR  +S +     RN+ GV  I  A+ + V+ + 
Sbjct: 803 RNGPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVG-RNTQGVTLIRTAEDESVVGLQ 861

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   +   +  +   +   A      G   E+ ++  D + EG+  E
Sbjct: 862 RIEEVEEVEEVELPEGEEAEATEANAEGQAPEVPTV--DDAAEGSEEE 907


>gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509]
          Length = 875

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + +S
Sbjct: 847 DLDS 850



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  ++ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDSIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1]
 gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1]
          Length = 875

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 893

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/915 (43%), Positives = 569/915 (62%), Gaps = 76/915 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I N DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIA+LV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            +R A A+V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CRRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GL++A+AN+DE++ +IR +P P  A+  L+ R W+   +  +++ 
Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL RLTGL    I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILS+  RL+ +I++EL   +D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELIHILSNTERLMEVIREELEMARDNFGDARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L+ Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-----SAIRVF---- 716
             +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF           V     
Sbjct: 663 SNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDEGNVKGGVR 722

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRG+ L KGDQV+S+                                     
Sbjct: 723 PMGRTASGVRGMKLVKGDQVVSLI------------------------------------ 746

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                            +   +  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ 
Sbjct: 747 -----------------VPKTDGDILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +V     ++ D+ +++++  TL+R  V+E+    R T+GV +  T++ E+VV ++
Sbjct: 790 N--GKVVGAVQADEGDEFMMITNAATLVRTRVSEVSQVGRNTQGVTLIRTSEGEKVVGLQ 847

Query: 896 RIRESEIVDEAESTE 910
           RI E +  D  +  +
Sbjct: 848 RIEELDEADLPQDDD 862



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 71/446 (15%), Positives = 166/446 (37%), Gaps = 38/446 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L          ++   K LL++  +  H+L      +  + E + + R   N   ARR  
Sbjct: 462 LHRLTGLEHGKILDEYKALLDEIAELIHILSNTERLMEVIREELEMAR--DNFGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q     E +     G     +++E 
Sbjct: 520 ITAASHDIDMEELIARED----VVVTLSHEGYVKYQVLTDYEAQRRGGKGKSATRMKDED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   V +RD+D +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFSNVR--ANGLIAVNLRDDDSLIGVEITDGES 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARG--KAL------INILSLNQGERITTIMPFPED 639
            ++ FS  G V +     +       +G  + +      +  + L +G+++ +++    D
Sbjct: 692 DIMLFSKSGKVVRFNEKPIVDDEGNVKGGVRPMGRTASGVRGMKLVKGDQVVSLIVPKTD 751

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDI 696
                   ++  T++G  +R +LS++   +R+  G +++K+     +++      + ++ 
Sbjct: 752 GD------ILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSERNGKVVGAVQADEGDEF 805

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           ++ T     VR  +S +     RN+ GV  I  ++G++V+ +  +   D     +   + 
Sbjct: 806 MMITNAATLVRTRVSEVSQVG-RNTQGVTLIRTSEGEKVVGLQRIEELDEADLPQDDDVS 864

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVE 782
                    +  +  I +   D + +
Sbjct: 865 SEDQSSVESTSTSTVIDTDSTDVNTD 890


>gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739]
 gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739]
          Length = 875

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+  ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12]
          Length = 921

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/905 (51%), Positives = 629/905 (69%), Gaps = 12/905 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE        E   +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  ++K Y K AR  GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  EV+D  +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +ATGRG+++IR  + IE+   DR+ I+VTEIPYQVNKA + E+IA+LVR K+I  IAD+R
Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP    L  +L+A
Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            WNA+D++ L+ LI D    +  DG + L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 421 QWNAADVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I+ S  R + +++ EL   + E+ TPR T I +   D +DE  I    MVV
Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+G   R +D V   F   TH  V+FFSS G VY+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KVWRLP   P A+G+AL+N+L     + IT ++P P+DE  W  L++VFAT  GNVRRN
Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+    RVFAG
Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI------ 772
           R S GVRGI LA+GD+VIS+A++ H +A  +ER  Y++  +A+RR  +            
Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDADTV 779

Query: 773 ---TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
              +  +  S+ +  +S ER  +L+  E+ +L VS+ GFG+R+S+YD+R+S R G+GI  
Sbjct: 780 QVDSDEEEGSNTDALLSPERFAQLEEAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITN 839

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S       + A  PV +   ++LV+D G LIRVPV+++R+ +R   GV +F    DE
Sbjct: 840 MTFSANKRGKEVAATLPVLEGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDE 899

Query: 890 RVVSV 894
           RV SV
Sbjct: 900 RVTSV 904


>gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
 gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
          Length = 894

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 916

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/916 (50%), Positives = 621/916 (67%), Gaps = 27/916 (2%)

Query: 1   MTEHIISSDEEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ I + D     G      + I DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 1   MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   + G    K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF
Sbjct: 61  WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D DPPA+ RYTE RL K A  LL D+ KDTVDF+PNYDG+ QEP VL AR+PN+LVN
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGEV+DGC+A +DNP I+L+ L+ II GPDFPT  +ILG  G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAPLILGTAGA 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           + AY  GRGSI++R    +E+      R  IV+T IPYQV K+ ++EKIAE  ++KRI  
Sbjct: 241 RKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDES+R+G RVVI+LKR A+ DV+LNQL+R T  QS F  NM+A+ G +PE   L 
Sbjct: 301 ISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPANMLAIRGGRPELLGLK 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+++FV FREEV+ RRTK+ L KARDRAH+L+GL IAV NLDEVV+IIR S NP  AR 
Sbjct: 361 DIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            L+ R W   +I   I L++      +    T  LSE+Q RAIL+LRL RLT LGRD+I 
Sbjct: 421 RLLAREWPIGEIAPYIRLVEAIEDDALTGTETYRLSEIQVRAILDLRLHRLTALGRDEIG 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L   I E L IL+ R +L G++++EL++VK    TPR + I      ++DED I 
Sbjct: 481 EELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATPRLSEITAPADGIDDEDLIE 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           R+DMVVT++  GY+KR PLS +RAQ RGGKGRSG+  +DED +  +F+ STHT VLFFS+
Sbjct: 541 RDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFFST 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATK 653
            G VY++KVWRLP G    RG+ ++N+L  L+QGE I  ++  PEDE+ W  L+V+FAT 
Sbjct: 601 AGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPIS 711
            GNVRRN +  F  I  +GK AMK +  DE  ++ V   ++ +D+LL ++ G+ +RFP  
Sbjct: 661 KGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFPAD 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGDTE 770
            +R F  R S GVRG++L  GD+VIS++I+      D +ER  Y+++             
Sbjct: 721 DVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEERDEYLRYAPW---------- 770

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                K +   E  I+ ER  EL  KEQF+LTV   G+GK +S+Y++R + R G+GI   
Sbjct: 771 -----KAEKDGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNI 825

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  + N  G +VA FP    DQ++LV+D+  LIR+P++ +R+  R + GV +F+ A +E+
Sbjct: 826 DNIERN--GLVVASFPAARADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVADNEQ 883

Query: 891 VVSVERIRESEIVDEA 906
           VVS  R+ E+E  D+A
Sbjct: 884 VVSAVRLAETEGDDDA 899



 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 91/254 (35%), Gaps = 16/254 (6%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +     S   A      DE    +   +++ ++  T  G   R P+S  R    R   G 
Sbjct: 518 YATPRLSEITAPADGIDDE----DLIERDDMVVTITLDGYIKRTPLSTFRA-QNRGGKGR 572

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G++    D + +M +                +     RL  G          +     +
Sbjct: 573 SGMATKDEDAIATMFVASTHTPVLFFSTAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLD 632

Query: 785 ISEERCQELKLKEQF-------ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             E     L L E         ++  + KG  +R +   F     +GK   A    + +E
Sbjct: 633 QGETIAAVLALPEDEAEWGKLHVMFATAKGNVRRNAMDAFANIPSNGK--FAMKFEEGDE 690

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896
              L+ V  +++ D ++L S +G  IR P +++R   SR + GV   +    + V+S+  
Sbjct: 691 -DHLIGVALLSEGDDVLLASRQGKAIRFPADDVREFQSRTSTGVRGMALKDGDEVISLSI 749

Query: 897 IRESEIVDEAESTE 910
           +    + D+ E  E
Sbjct: 750 LHRVGVRDQEERDE 763


>gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
 gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
          Length = 894

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
 gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
          Length = 894

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
 gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
          Length = 894

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
 gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
          Length = 894

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301]
 gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T]
 gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227]
 gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. W3110]
 gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A]
 gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94]
 gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1]
 gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989]
 gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088]
 gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736]
 gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A
 gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A
 gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli]
 gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli]
 gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K12 substr. W3110]
 gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227]
 gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A]
 gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94]
 gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           55989]
 gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI1]
 gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088]
 gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W]
 gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431]
 gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112]
 gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B]
 gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14]
 gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68]
 gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180]
 gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357]
 gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11]
 gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520]
 gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482]
 gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120]
 gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863]
 gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1]
 gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167]
 gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v]
 gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74]
 gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9]
          Length = 875

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905]
 gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82]
 gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024]
 gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026]
 gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359]
 gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354]
 gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185]
 gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299]
 gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli]
 gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           UMN026]
 gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. TW14359]
 gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042]
 gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185]
 gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354]
 gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101]
 gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89]
 gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687]
 gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905]
 gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G]
 gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125]
 gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044]
 gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)]
 gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489]
 gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 106/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++  P  E +     ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLI-VPRGEGA-----ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605]
 gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15]
 gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  ++ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
 gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 574/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69]
 gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88]
 gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a]
 gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206]
 gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           S88]
 gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           ED1a]
 gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82]
 gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034]
 gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972]
 gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146]
 gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3]
 gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1]
 gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3]
 gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327]
 gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1]
 gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252]
 gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263]
 gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2]
 gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  ++ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5]
 gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5]
 gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1]
 gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           parainfluenzae T3T1]
          Length = 881

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/915 (45%), Positives = 589/915 (64%), Gaps = 45/915 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIHSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+   KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E T   +EQI+VTE+PYQVNKA ++EKIAEL+++K+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV+RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S   + A  +L+ R
Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISR 413

Query: 421 SWNASD-IKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            W  ++ I  L+D     +      G      YLS  Q  AILELRL RLTGL  +++ N
Sbjct: 414 PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVIN 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I E L I++S  RL+ +I++EL  V+ +    RRT I     D++ ED I +
Sbjct: 474 EYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +V+ AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEE---DKFVIMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R 
Sbjct: 651 IVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + EE++  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDIADDESAV--------------EIEEVSDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             + +++ NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLE 862

Query: 896 RIRESEIVDEAESTE 910
           R+   ++ DE E TE
Sbjct: 863 RVC--DVDDEDEGTE 875



 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 25/259 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V+  +  G VK++ L+ +   R    G   + +RDED +  + 
Sbjct: 626 ERITAILPISAYEEDKFVIMATAGGIVKKIALTEFSRPRSS--GIIALNLRDEDELIGVD 683

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA---RGKALINILSLNQGERITTIMPFPE 638
           I      ++ FSS G V +     +      A   RG  L     +   E    I    +
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAESAVRAMGRLATGVRGIKLALTNDIADDESAVEIEEVSD 743

Query: 639 DESS----------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
           D +                  N+  ++ AT++G  +R +LS++   +R+  G I++K+  
Sbjct: 744 DNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              ++++     + + I+L T  G  VR  +S + +   RN+ GVR I  A+ + V+S+ 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVG-RNTQGVRLIRTAEDEHVVSLE 862

Query: 740 IVLHADADYDERICYMKHM 758
            V   D + +         
Sbjct: 863 RVCDVDDEDEGTEDVTSEE 881


>gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
 gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
          Length = 875

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
 gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
          Length = 895

 Score =  836 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 564/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 154/451 (34%), Gaps = 52/451 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEIT 773
             +             +        D  E  
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDDGEQE 895


>gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017]
          Length = 875

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/915 (44%), Positives = 567/915 (61%), Gaps = 74/915 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH +L DL K+TVDF PNYDGS Q PVVL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GC+A +DN DI +D LME I GPDFPT A+I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAAIINGRAGILEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE+     +E IV+TEIPYQVNKA ++EKIAELV+EK++  I +LRDES ++G R
Sbjct: 243 RARYEIEQDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG +ADV++N L+  T L+++F +NMVAL   +P+   L   ++ FV  R EVV
Sbjct: 303 VVIELRRGENADVLMNNLFALTPLETVFGINMVALINGEPKLLNLKDCIECFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L G A+A+AN+D V+ +I+ S     A+  LM + W    +  
Sbjct: 363 TRRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTG 422

Query: 430 LIDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++         DD +   G  +G  YLSEVQ ++IL+LRL +LTGL  + I +E  S+ 
Sbjct: 423 MLERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSII 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E L+IL +  RL+ +I++EL +V++E    R T I     D+   D I  EDMVVT
Sbjct: 483 EQIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL  Y+AQ+RGGKG++   +RDEDFV  L I ++H ++L F+S G +Y  
Sbjct: 543 LSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S  +RG+ ++NIL L + ERITT++P  E  +   + YV  AT+ G V++  
Sbjct: 603 KTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTA---DHYVFMATRQGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++       + D++L +  G+ +RF    +R    R +
Sbjct: 660 LENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPMG-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA+G  V+S+ I                                         
Sbjct: 719 RGVRGIRLAQGQTVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++ +ILT S KG+GKRT+  +F +  R G+G+ A   S+ N  G L
Sbjct: 738 ------------PQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN--GDL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+   V   DQ++L+S++GTL+R   +E+ I  R T+GV +   ++ E +V VERI E E
Sbjct: 784 VSAVQVISGDQLMLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPE 843

Query: 902 IV------DEAESTE 910
                   +E E  E
Sbjct: 844 EDESDFQGEEGEGVE 858


>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
          Length = 876

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   REIAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +  LL DL K+TVDF PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMAKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I++ +I ++ LME I GPDFPT A I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             IE      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+  TL  I++AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKEIIEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL S  RL+ +I++EL++++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIHILQSAERLMEVIREELVAMRDQFGDARRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R    R++ GV
Sbjct: 663 FSRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAMG-RSASGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA+GD+V+S+ +     A                                      
Sbjct: 722 RGIRLAEGDKVVSLIVPREEGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGT 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ +    +
Sbjct: 787 VQVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAKPVEEE 846

Query: 905 EAEST 909
           E + +
Sbjct: 847 ELDGS 851



 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 164/435 (37%), Gaps = 35/435 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+       E ++   K LL++  +  H+L      +  + E   ++        ARR  
Sbjct: 463 LQKLTGLEHEKLLDEYKELLDQIAELIHILQSAERLMEVIRE--ELVAMRDQFGDARRTE 520

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  +    +I+DLI+  D     + +       + Q  +  E +     G     I+ E 
Sbjct: 521 ITANSADINIEDLINQED----VVVTLSHQGYVKYQQLSDYEAQRRGGKGKSAARIKEED 576

Query: 477 -LNSLG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLD 526
            ++ L      + +   SSR RL      ++  + +     R   IV        E +  
Sbjct: 577 FIDRLLVANTHDTILCFSSRGRLY---WMKVYQLPEASRGARGRPIVNLLPLEANERITA 633

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +           +   +  G VK+  L  +   R    G   + +R++D +  + + + +
Sbjct: 634 ILPVREYTEGFNIFMATADGTVKKTALQEFSRPRSA--GIIAINLREDDELIGVALTNGN 691

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
              + FS+ G V +     +      A G   +  + L +G+++ +++   E+ +     
Sbjct: 692 DEAMLFSAAGKVVRFAESAVRAMGRSASG---VRGIRLAEGDKVVSLIVPREEGA----- 743

Query: 647 YVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLG 703
            ++  T++G  +R   S++   +R+  G I++K+      ++        + I++ T  G
Sbjct: 744 -ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERNGPVVGTVQVVDSDQIMMITDAG 802

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VR  +S + V   RN+ GV  I  A+ + V+ +  V     + +      +  +    
Sbjct: 803 TLVRTRVSEVSVVG-RNTQGVILIRTAEDENVVGLQRVAKPVEEEELDGSVAEGENDIAP 861

Query: 764 LISGDTEEITSLKND 778
            +  D +   +   +
Sbjct: 862 EVDSDDDAPETDDEE 876


>gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 881

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/915 (45%), Positives = 589/915 (64%), Gaps = 45/915 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIHSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+   KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E T   +EQI+VTE+PYQVNKA ++EKIAEL+++K+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV+RR+ + L KAR+R H+L GLA+A +N+DEV+ IIR S   + A  +L+ R
Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISR 413

Query: 421 SWNASD-IKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            W  ++ I  L+D     +      G      YLS  Q  AILELRL RLTGL  +++ N
Sbjct: 414 PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVIN 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I E L I++S  RL+ +I++EL  V+ +    RRT I     D++ ED I +
Sbjct: 474 EYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +V+ AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEE---DKFVIMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R 
Sbjct: 651 IVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + EE++  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDIADDESAV--------------EIEEVSDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             + +++ NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLE 862

Query: 896 RIRESEIVDEAESTE 910
           R+   ++ DE E +E
Sbjct: 863 RVC--DVDDEDEGSE 875



 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 25/259 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V+  +  G VK++ L+ +   R    G   + +RDED +  + 
Sbjct: 626 ERITAILPISAYEEDKFVIMATAGGIVKKIALTEFSRPRSS--GIIALNLRDEDELIGVD 683

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA---RGKALINILSLNQGERITTIMPFPE 638
           I      ++ FSS G V +     +      A   RG  L     +   E    I    +
Sbjct: 684 ITDGSNEIMLFSSQGRVVRFAESAVRAMGRLATGVRGIKLALTNDIADDESAVEIEEVSD 743

Query: 639 DESS----------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS 680
           D +                  N+  ++ AT++G  +R +LS++   +R+  G I++K+  
Sbjct: 744 DNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSE 803

Query: 681 -RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              ++++     + + I+L T  G  VR  +S + +   RN+ GVR I  A+ + V+S+ 
Sbjct: 804 RNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVG-RNTQGVRLIRTAEDEHVVSLE 862

Query: 740 IVLHADADYDERICYMKHM 758
            V   D + +         
Sbjct: 863 RVCDVDDEDEGSEDVTSEE 881


>gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
          Length = 893

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/908 (44%), Positives = 563/908 (62%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTHMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 ID-------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G    L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL S   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAE---NHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                 +   + D+  I   ++D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIGPTQDDILC- 777

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 778 -----------------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 11/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRA-QKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    +E   +  ++   +
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE-YAENHYVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K+T   +F    R  +G  A ++ + +   AL+ V   +    ++L +  G  +R
Sbjct: 650 RQGTVKKTPLSEFAF--RLARGKIAINLDQGD---ALIGVALTDGERDVLLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 705 FSENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12]
          Length = 875

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I  PDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/906 (43%), Positives = 571/906 (63%), Gaps = 67/906 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +++  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN
Sbjct: 2   EQQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA 
Sbjct: 62  RAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K AH LL DL K+TVDF PNYDGS  EP+V  AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HN+ EVVD C+A++ NPD+D++ L+E++  PDFPT   I G  G+K  Y TGRG +
Sbjct: 182 NIPPHNMTEVVDACLALLKNPDMDIEQLIELVPAPDFPTAGFIYGLAGVKEGYRTGRGRV 241

Query: 249 VIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           V+R  +H E    GDR+ I++ E+PYQVNKA +L KI E+VREKRI  ++++RDESD+ G
Sbjct: 242 VMRARTHFEDIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R VIELKRG +ADVILNQLY+ T +Q  F +NMVA+   +P+   L  +++AF+  R E
Sbjct: 302 MRAVIELKRGENADVILNQLYKDTQMQDSFGINMVAIVDGQPKLCNLKDVIEAFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+RELM R W +S +
Sbjct: 362 VVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLV 421

Query: 428 KDLIDLIDD--------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +D++  +D+          + +      +LS+ Q +AILELRL RLTGL +D I  E   
Sbjct: 422 EDMLSRVDEASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYRE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I + LDIL+  +R+  II  EL++++ +    RR+ IV    DM  ED I  ED+V
Sbjct: 482 VMDKITDLLDILAKPARVTQIIGDELITIRSQFGDKRRSEIVTHTQDMSMEDLIAPEDVV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K   L  YRAQ+RGG+G+     +++DF+ +LFI +TH  +L FS+ G VY
Sbjct: 542 VTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G+  +RGK ++N+L L  GE+I  I+P    +    + ++ FAT  G V++
Sbjct: 602 WLKVYDVPQGTRISRGKPIVNLLPLEAGEKINAILPV---KQFAEDQFIFFATSEGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LSDF    ++G IA+ LD  D ++ V     ++D++L +  G+ VRF    +R    R
Sbjct: 659 TPLSDFANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++LAKG +VI++ +  +                                    
Sbjct: 718 TARGVRGMNLAKGGKVIALLVAEN------------------------------------ 741

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                           +EQ +LT +E G+GKRT   ++    R  +G+ A   S+ N  G
Sbjct: 742 ----------------EEQSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V   D+I+L+   G LIR  VNEIR   RAT+GV + +  + E++  + RI E
Sbjct: 784 KVVAATLVKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGEKLAGLSRIAE 843

Query: 900 SEIVDE 905
           +E   E
Sbjct: 844 TEEESE 849


>gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3]
 gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 897

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 568/905 (62%), Gaps = 48/905 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+I++P + ++ LME I GPDFPT A++ GR GI +AY TGRG  V+R  
Sbjct: 186 NLTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAAIVNGRKGIIDAYKTGRGRAVMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+ + W    +K +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L ILSS  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLLILSSPQRLMEVITEELHEVLENFGDKRRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L++GERIT I+P  E     ++ Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSEGERITAILPVREYA---DDKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF        A     G  
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNE-----KARNAETGEV 717

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I    G++VI++                 +  +  R +   D + + SL          
Sbjct: 718 KIDPETGEEVIAL-------------RAMGRTATGVRGIKLEDGQTVVSLI--------- 755

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +  ++  ILTV+E G+GKRT+  ++   +R  KG+ +  VS+ N  GA+V   
Sbjct: 756 -------VPKEDGAILTVTENGYGKRTALSEYPAKSRGTKGVVSIKVSERN--GAVVGAV 806

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V DND+I+L+SDKGTL+R P   +    R T+GV I  TA+DE+VV ++RI E +  +E
Sbjct: 807 QVGDNDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRTAEDEKVVGLQRIDEIQ-DEE 865

Query: 906 AESTE 910
            E  E
Sbjct: 866 VELDE 870


>gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61]
          Length = 875

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ +FV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIASFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 892

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/922 (41%), Positives = 562/922 (60%), Gaps = 69/922 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF  NYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W+++ ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSALVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAEGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYRDIMAEIADLLDILARPERITTIIIDELTAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L++GE+I  I+P  + ++     ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFDAE---HFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +G  VI+M +     A+                          
Sbjct: 719 RPMG-RQARGVRGMNLEEGQAVIAMLVAPAETAEEAADAGV------------------- 758

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 759 -----------------------RGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 795

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  
Sbjct: 796 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 853

Query: 894 VERIRESEIV-----DEAESTE 910
           ++RI ES+       +E E  +
Sbjct: 854 LQRIVESDADNGGNGEEPEEAD 875



 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 104/247 (42%), Gaps = 14/247 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        E  +   +  G VK+  L+ +   R+   G   V + + D++    
Sbjct: 636 EKINVILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKA--GIIAVDLDEGDYLIGAA 693

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +     QARG   +  ++L +G+ +  ++  P + +
Sbjct: 694 VTDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG---VRGMNLEEGQAVIAMLVAPAETA 750

Query: 642 SWNNL-----YVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQE 693
                      V+ AT++G  +R  ++++ +  R   G IA++       +++    + E
Sbjct: 751 EEAADAGVRGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPE 810

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I+L T  G  +R  ++ IR    R + GV  I++ +G ++  +  ++ +DAD      
Sbjct: 811 DEIMLITTGGVLIRTRVAEIREMG-RATQGVTLINVDEGTKLSGLQRIVESDADNGGNGE 869

Query: 754 YMKHMSA 760
             +    
Sbjct: 870 EPEEADG 876


>gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046]
 gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  ++ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A
 gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum]
          Length = 878

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/903 (45%), Positives = 573/903 (63%), Gaps = 69/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL + K +    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F + + SG IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMG-RTATGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+V+S+                                              
Sbjct: 721 RGINLQGEDRVVSLI--------------------------------------------- 735

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V  
Sbjct: 736 --------IPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 786 VQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDE 845

Query: 905 EAE 907
           E +
Sbjct: 846 ELD 848


>gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39]
 gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI39]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPGATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+S 
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSL 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
 gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  ++ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTSEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
 gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
          Length = 875

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  T +DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I   + + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTTEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 894

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 563/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/921 (42%), Positives = 551/921 (59%), Gaps = 78/921 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP   +D L+EII  PDFPTG +I G +G++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIYGMSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IV+  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   D                  + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 DMLSRADGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II  EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE+IT ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKE---FSEDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R    RN+ GVRG+ L +   VI++ +                             
Sbjct: 719 ENDVRPMG-RNARGVRGMMLEETQTVIALLVAGDET------------------------ 753

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                       Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 754 ----------------------------QTVLTATENGYGKRTPIGEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +  N  G +V    VN  D+I+L++  G L+R  V EIR   RAT+GV + +     
Sbjct: 786 IQTTSRN--GKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGS 843

Query: 890 RVVSVERIRESEIVDEAESTE 910
            +  V R+ ES+  D+ E  E
Sbjct: 844 TLSGVRRVVESDADDDGELDE 864



 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 99/262 (37%), Gaps = 14/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+ PLS +   R+   G   V + D D++    
Sbjct: 640 EKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKA--GIIAVDLDDGDYLIGAD 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  + L + + +  ++      +
Sbjct: 698 LTDGKHDVMLFSDSGKAVRFDENDVRPMGRNARG---VRGMMLEETQTVIALLV-----A 749

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  + ++ +  R  K  + + +     +++        ++I+L
Sbjct: 750 GDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQTTSRNGKVVGAVLVNPTDEIML 809

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  ++ IR    R + GV  I++  G  +  +  V+ +DAD D  +      
Sbjct: 810 ITTGGVLVRTRVAEIREMG-RATQGVTLINVDDGSTLSGVRRVVESDADDDGELDEDVQA 868

Query: 759 SAQRRLISGDTEEITSLKNDSS 780
              +     DT         + 
Sbjct: 869 EDGQAQGGDDTNGAADSTEPTE 890


>gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
 gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
          Length = 875

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTECEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 106/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+     + + +  V+   V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP----VTECEEGVK---VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
 gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
          Length = 894

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 563/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
 gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
          Length = 902

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 636/894 (71%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I++AF+ FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 ELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L +GE IT IMP P    +  N  +VF T +GN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLAEGETITNIMPLPS--ENDENQNIVFTTAYGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + + L+T+ G+ +RF +S +R F  RNS GVRGI LAK 
Sbjct: 660 KIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A +RL +     I S    +  +  I  E   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLA-KRLGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++RI+NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
 gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
          Length = 894

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 563/918 (61%), Gaps = 90/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG   L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+                       
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------------- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                          +   E  +LTV+E G+GKRTS  ++    
Sbjct: 761 -------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERIRE 899
           +  T++ E VV ++RI E
Sbjct: 848 LIRTSEGESVVGLQRIDE 865



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 691

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 752 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 806 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 865 EIEESELPEGEEALVENDAPVAQDDDGEQ 893


>gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c]
 gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c]
          Length = 893

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/908 (44%), Positives = 563/908 (62%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 ID-------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G    L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAE---NHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                 +   + D+  I   ++D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILC- 777

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 778 -----------------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 11/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRA-QKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    +E   +  ++   +
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE-YAENHYVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K+T   +F    R  +G  A ++ + +   AL+ V   +    ++L +  G  +R
Sbjct: 650 RQGTVKKTPLSEFAF--RLARGKIAINLDQGD---ALIGVALTDGERDVLLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 705 FSENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407]
          Length = 875

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQ+NKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12]
 gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12]
          Length = 893

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/908 (44%), Positives = 563/908 (62%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 ID-------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G    L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAE---NHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                 +   + D+  I   ++D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATGVDMLEEAEETADDDIQTANTADSVHIDPTQDDILC- 777

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 778 -----------------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 11/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRA-QKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    +E   +  ++   +
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE-YAENHYVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K+T   +F    R  +G  A ++ + +   AL+ V   +    ++L +  G  +R
Sbjct: 650 RQGTVKKTPLSEFAF--RLARGKIAINLDQGD---ALIGVALTDGERDVLLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 705 FSENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171]
 gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171]
          Length = 875

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  +A+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRSAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRSAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/911 (50%), Positives = 624/911 (68%), Gaps = 24/911 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +D      I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETALADPS---DISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NK Y K ARI G+V+GKYHPHG++AIYDALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K    LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A I+NP I +D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR+ IV+T IPYQV K  ++EKIAE  ++KRI  I+D+R
Sbjct: 238 YHTGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   +  I++A
Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   + L++    T  S  T  LS+ Q RAIL+LRL RLT LGRD+I +EL  L
Sbjct: 418 DWPVAEIAPYLKLVEAIE-TEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL  R +L  ++++E  +++ +  TPR + I      +EDED I RE+MVV
Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIEDEDLIEREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I T++P PEDE SW +L+V+FAT +G VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  +  +GKIAM+ D    D ++ V   T+E+D+LL T+ G+ +RF  + +R F  
Sbjct: 657 SMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRG++L   D+VIS++I+  + AD D+R  Y++    +                 
Sbjct: 717 RTSTGVRGMTLKGDDEVISLSILHRSGADQDQREEYLRFAPWKPEKEGE----------- 765

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                   ++    +K +EQFILTV   G+GK +S+Y++R + R G+GI  T++  I   
Sbjct: 766 -----MQDQDMFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIGRN 818

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP    DQ++LV+D+  LIR+ ++ +R+  R++ GV +F+ + DE VVS  +I 
Sbjct: 819 GPVVASFPATQADQLMLVTDQAKLIRMGLDSLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 878

Query: 899 ESEIVDEAEST 909
           ES+  ++   T
Sbjct: 879 ESDEAEDTAET 889


>gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
 gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
          Length = 920

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/904 (51%), Positives = 629/904 (69%), Gaps = 11/904 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE        E   +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  ++K Y K AR  GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  EV+D  +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +ATGRG+++IR  + IE+   DR+ I+VTEIPYQVNKA + E+IA+LVR K+I  IAD+R
Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP    L  +L+A
Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W+A++++ L+ LI D    +  DG + L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 421 QWDAAEVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I+ S  R + +++ EL   + E+ TPR T I +   D +DE  I    MVV
Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIFTPRMTEIADYAGDQDDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+G   R +D V   F   TH  V+FFSS G VY+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KVWRLP   P A+G+AL+N+L     + IT ++P P+DE  W  L++VFAT  GNVRRN
Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+    RVFAG
Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----- 773
           R S GVRGI LA+GD+VIS+A++ H +A  +ER  Y++  +A+RR  +            
Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDVDAV 779

Query: 774 ---SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              S +  S  +  +S ER ++L++ E+ +L VS+ GFG+R+S+YD+R+S R G+GI   
Sbjct: 780 QPDSDEEGSDTDALLSPERFEQLEVAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNM 839

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S       + A  PV     ++LV+D G LIRVPV+++R+ +R   GV +F    DER
Sbjct: 840 TFSANKRGKEVAATLPVLAGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDER 899

Query: 891 VVSV 894
           V SV
Sbjct: 900 VTSV 903


>gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
 gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
          Length = 875

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 576/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23]
 gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23]
          Length = 893

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/909 (44%), Positives = 564/909 (62%), Gaps = 35/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 ID-------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G  G    L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL S   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAE---NHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                         EE     +D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG-------------------VDMLEEAEETADDDIQT 759

Query: 783 GNISEERCQELKLKEQF-ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            N +E    +    +   ILT +E G+GK T    +    R  +G+     ++ N  G L
Sbjct: 760 ANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRL 817

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900
           VA   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S 
Sbjct: 818 VAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASL 877

Query: 901 EIVDEAEST 909
            I DE E  
Sbjct: 878 SIPDETEDD 886



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 11/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRA-QKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    +E   +  ++   +
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE-YAENHYVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K+T   +F    R  +G  A ++ + +   AL+ V   +    ++L +  G  +R
Sbjct: 650 RQGTVKKTPLSEFAF--RLARGKIAINLDQGD---ALIGVALTDGERDVLLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 705 FSENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197]
 gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
 gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197]
 gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
          Length = 875

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/904 (44%), Positives = 575/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+  ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718]
 gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC
           19718]
          Length = 848

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/905 (42%), Positives = 565/905 (62%), Gaps = 69/905 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C+ ++ +PD+D+  LM  I  PDFPT  +I G +GIK+ Y TGRG ++
Sbjct: 182 IPPHNLGEVIDACLLLLRDPDVDIAELMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   G+R  I++ E+PYQVNKA +L +I ELVR+KRI  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T +Q  F +NMVAL   +P    L  +L  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDHFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A++ LM R+W +S ++
Sbjct: 362 VTRRTLFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVE 421

Query: 429 DLIDLIDDSSYTIGS----------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++      +               D    LS+ Q +AIL+LRL RLTGL ++ I +E  
Sbjct: 422 EMLLRAMIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYR 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I++ LDIL++  R+  II +EL ++K +   PRR+ +V    ++  ED I   DM
Sbjct: 482 EILDKIRDLLDILANPERITTIIVEELTAIKGQFGDPRRSEVVIDAQNLNTEDLITPADM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  YRAQ+RGG+G+  +  R++DF+ +LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P GS  +RG+ + N++ L Q E+I  ++P    +S  +  YV  +T  G V+
Sbjct: 602 YWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPV---KSFDDTRYVFMSTAGGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ V     ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L  G QVIS+ +  +                                   
Sbjct: 718 RNARGVRGMKLGAGQQVISLLVADN----------------------------------- 742

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +   +LT +E G+GKRT   ++   NR  +G+ A + +  N  
Sbjct: 743 -----------------ENMAVLTATENGYGKRTPITEYTRHNRGTQGMIAINTNVRN-- 783

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA   V  +D+I+L++  G +IR  V+EIR   RAT+GV + +    E++  +ERI 
Sbjct: 784 GKVVAAQLVESSDEIMLITTGGVMIRTRVSEIREMGRATQGVTLINLDAGEKLAGLERIV 843

Query: 899 ESEIV 903
           E++  
Sbjct: 844 ETDED 848


>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
 gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
          Length = 861

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/902 (43%), Positives = 561/902 (62%), Gaps = 68/902 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D+   K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +W
Sbjct: 2   TDQFFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR  LI+GQGNFGSVDGD  AA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + AH LL D+ K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DGC+AV+ + DI +D L++II  PDFPT  +I G  G+K  Y TGRG 
Sbjct: 182 TNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGR 241

Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +++R  +H E    GDR+ I+V E+PYQVNKA +LE+I ELVR+K+I  I+DLRDESD+ 
Sbjct: 242 VIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKS 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  IL+ F+  R 
Sbjct: 302 GMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S  P  A+  LM+R W +  
Sbjct: 362 EVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPL 421

Query: 427 IKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++++  +D                +    LSEVQ +AILELRL RLTGL +D I  E  
Sbjct: 422 VEEMLARVDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYR 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +   I + +DIL+   R+  II  EL ++K +    RR+ I     D+  ED I  +DM
Sbjct: 482 EIMEVILDLIDILARPERINQIISDELNAIKTQFGDARRSEIEPFGGDINIEDLITPQDM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+K  P+  YR+QRRGG+G+     +D+DF+  LF+ +TH  VL FSS G  
Sbjct: 542 VVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFGRC 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ LP G   +RGK ++N+L L +GE+I  ++P  E     ++ +V   T +G V+
Sbjct: 602 YWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKEFR---DDQFVFMCTANGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L DF +   +G IA+ LD  D ++ V     ++ ++L +  G+ VRF  + +R    
Sbjct: 659 KTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAMG- 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L +G QVIS+ +    D                                 
Sbjct: 718 RNATGVRGMMLGEGQQVISLLVTCSED--------------------------------- 744

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                              Q +LT S+ G+GKRT + +FR ++R  +G+ A D++  ++ 
Sbjct: 745 -------------------QMVLTASDGGYGKRTRAGEFRHTSRGTQGVIAMDLT--DKT 783

Query: 839 G-ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G  LVA   V + D ++L++  G LIR  V+E+R   R+ +GV + +  + E+++S+ ++
Sbjct: 784 GLKLVAASLVEETDDVMLITTGGVLIRTKVSEVRETGRSAQGVRLINLDEGEKLISLVKV 843

Query: 898 RE 899
            E
Sbjct: 844 AE 845


>gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 924

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/894 (51%), Positives = 624/894 (69%), Gaps = 10/894 (1%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  G+VMGK
Sbjct: 1   MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA+ FLLD
Sbjct: 61  YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ +DTVDF+PNYD S  EP VL A +PN+LVNG  GIAVGMATNIPTHN GEV+D  +A
Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R  + IE+   DR+
Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEEIRKDRQ 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQVNKA + EKIA+LVR K I  I+D+RDESDR G RVVIELKR A+ DV+L
Sbjct: 241 AIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ FS NM+AL+  KP    L  IL+AF+ FREEV++RR ++ LNKARDR 
Sbjct: 301 NQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLNKARDRG 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGL +AVAN+DEV+ +IR +P+  TAR  LM R W+AS++  L++LI D    I  D
Sbjct: 361 HLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVI-ID 419

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G + L+E Q R ILELRL RLTGL R+ I+ EL  +  +I E L I+ SR R + ++++E
Sbjct: 420 GKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMREE 479

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           LL+ + E+ TPR T I + L D  DE  I    MVVT++  G++KR PL V+R+Q RGG+
Sbjct: 480 LLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQNRGGR 539

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GR+    R +D +   F   TH  V+FFSS G  Y+ KVW LP  +P A+G+AL+N+L  
Sbjct: 540 GRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRALVNLLPE 599

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
              + IT ++P P+DE  W +L++ FAT  GNVRRN+LSDF  I  SG IAMKLD  D +
Sbjct: 600 LGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKLDEGDSL 659

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAI--RVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + V TC +  D+ L TK  +C+RF I+    RVFAGR S GVRGI L +GD VIS+ I+ 
Sbjct: 660 IGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVISLCILN 719

Query: 743 HADADYDERICYMKHMSAQRRLI------SGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           H DA  +ER  Y++  +A+RR        S + E ++  +    + G++++ER +EL+ +
Sbjct: 720 HVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERFEELEQQ 779

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ +LTV++ GFG+R+S+YD+R+S R G+GI     S       +V   P  D   ++LV
Sbjct: 780 EEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLV 839

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +D G LIR+PV+++R+ SR   GV +F     E V+ V  + E +  +E ++ E
Sbjct: 840 TDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICVFPVLEDD-TEEGDTDE 892


>gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 900

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 635/894 (71%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTV+FRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  ++NP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLKRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 ELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L+ GE IT IMP P    +  N  +VFAT +GN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLSDGETITNIMPLPS--ENDENQNIVFATAYGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K 
Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A +RL +     I S    +  +  I  E   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLA-KRLGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
 gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
          Length = 880

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/904 (44%), Positives = 566/904 (62%), Gaps = 76/904 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR----------V 715
             +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF    I            
Sbjct: 663 ANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTKGGVR 722

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI L +GDQV+S+                                     
Sbjct: 723 PMGRTAAGVRGIKLVEGDQVVSLI------------------------------------ 746

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                            +   +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ 
Sbjct: 747 -----------------VPKNDGDILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSER 789

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV +  T++ E VV ++
Sbjct: 790 N--GSVVGAVQVTEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQ 847

Query: 896 RIRE 899
           RI E
Sbjct: 848 RIDE 851



 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 158/435 (36%), Gaps = 38/435 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 575

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   V +RD+D +  + I    +
Sbjct: 634 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIAVNLRDDDALIGVEITDGES 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGK--------ALINILSLNQGERITTIMPFPED 639
            ++ FS  G V +     +       +G         A +  + L +G+++ +++     
Sbjct: 692 DIMLFSKSGKVVRFNEKPIEDEEGNTKGGVRPMGRTAAGVRGIKLVEGDQVVSLIV---- 747

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDI 696
               N+  ++  T++G  +R  L ++   +R+  G +++K+      ++     T+ ++ 
Sbjct: 748 --PKNDGDILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSERNGSVVGAVQVTEGDEF 805

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  +   +           
Sbjct: 806 MMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEAL 864

Query: 757 HMSAQRRLISGDTEE 771
             +      + D EE
Sbjct: 865 IENDAPAAQNDDGEE 879


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/901 (44%), Positives = 565/901 (62%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A+I++ +I +D LME I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLSEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAIINGRRGIDEAYRTGRGKIYVRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKEILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           E
Sbjct: 847 E 847


>gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933]
 gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 875

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/904 (44%), Positives = 574/904 (63%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++  ME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE  +V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 905 EAES 908
           + ++
Sbjct: 847 DLDT 850



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
 gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
          Length = 867

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/919 (42%), Positives = 563/919 (61%), Gaps = 77/919 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLSNPDATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + +Y + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL +VK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTTVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  A
Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIALLVA------------------------------ 747

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 748 ----------------------GSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERIRESEIVDEAESTE 910
             +++I E+E  D  E+ E
Sbjct: 844 SGLQQIAEAEEGD-GEADE 861


>gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 900

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 635/894 (71%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTV+FRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 ELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T+LF+ +THTS+LFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L+  E IT IMP P    +  N  +VFAT +GN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLSDSETITNIMPLPS--ENDENQNIVFATAYGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K 
Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A +RL +     I S    +  +  I  E   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLA-KRLGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 900

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/921 (42%), Positives = 569/921 (61%), Gaps = 62/921 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLRKIAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+  C+ V+ NP+  +D L+EII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLDEVISACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+DE + II+ + NP  A++ELM ++W++S ++
Sbjct: 362 VTRRTIFELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  Y + + G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLDME 528
            NE   +  EI + LD+L+   R+  +I+ EL  V+ E       T RR+ I     ++ 
Sbjct: 482 VNEYKEVMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFIEMNATELF 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +DMVVT+S+ GY+K  PLS YRAQ+RGG+G+     ++ED++  LF+ +TH  
Sbjct: 542 TEDLITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDI 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS  G +Y  KVW +P GS  +RGK ++N+  L +GE+IT I+P    +   ++ YV
Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPI---KGYQDDHYV 658

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++ +LSDF    ++G IA+ L+  D ++       ++D++L +  G+ VRF
Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R    R + GVRG++L  G QVI+M +     A+  E      + +A        
Sbjct: 719 DENDVRPMG-RTARGVRGMNLGDGHQVIAMLVAPAEAAEGAEAAVVDANGAAI------- 770

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 771 ----------------------------PSSVLTATENGYGKRTPIAEYTRHGRGTKGMI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   ++ N  G +VA   V+  DQI+L++  G L+R  V+EIR   RAT+GV + +  + 
Sbjct: 803 AIQTTERN--GKVVAAALVSPEDQIMLITTGGILVRTRVSEIREMGRATQGVTLINVDEG 860

Query: 889 ERVVSVERIRESEIVDEAEST 909
            R+  ++RI ES+  DE +  
Sbjct: 861 TRLSGLQRIAESDSDDETDEE 881


>gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
 gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
          Length = 899

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/907 (44%), Positives = 576/907 (63%), Gaps = 48/907 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   REILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL KDTVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+DGC+A+ID+  + +D LME I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NMVEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             IE      R+ I+VTE+PYQVNKA ++EKIAELV++KRI  IA+LRDESD++G RVVI
Sbjct: 246 HTIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +V++N L+  T LQ++F +NMVAL+G +P    +  +L+AF+  R EVV RR
Sbjct: 306 EVKRGESGEVVVNNLFAQTQLQNVFGINMVALDGGEPRTLNIKEVLEAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A++N+DEV+ +I+ SP+   A+ +L++R+W    +  +++
Sbjct: 366 TLFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLE 425

Query: 433 LI-------DDSSYTIG---SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                    +D     G   +     LS  Q +AILELRL RLTGL  + + +E   +  
Sbjct: 426 RAGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILE 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E   IL+S  RLL +I++EL +V+D+    RRT I    LD+  ED I  EDMVVTV
Sbjct: 486 KIAELTAILASADRLLEVIREELTAVRDQFGETRRTEIQASHLDLSIEDLIAEEDMVVTV 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY K  PLS Y+AQRRGG+G+S   M+DED +  L + STH +VL FS+ G VY  K
Sbjct: 546 SRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRGKVYWLK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P  S  +RGK L+N+L L + E I  I+P  + +    + Y+ FAT  G V+R  L
Sbjct: 606 VYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYD---PDSYIFFATAKGTVKRTSL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + F +    G IA+ L+  D ++     +  +  +L +  G+ +RF  S +R    R + 
Sbjct: 663 AQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAMG-RTAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L  G +VIS+ I                                 S   D+  +
Sbjct: 722 GVRGMRLLDGAEVISLIIPR-------------------------------SQLIDAEDQ 750

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            + + +  + L   + +ILT SE G+GKRT   +F +  R G+G+ A   S+ N  G+LV
Sbjct: 751 DDAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERN--GSLV 808

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V  +D+++L++DKGTL+R  V+E+ I+SR T+GV++    + E +V   RI E E 
Sbjct: 809 AAMQVYASDEMMLITDKGTLVRTRVDEVSISSRNTQGVMLIRLGESESLVKTVRIDEPEE 868

Query: 903 VDEAEST 909
           VD AE  
Sbjct: 869 VDAAEVD 875



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 103/276 (37%), Gaps = 25/276 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +   +  G VKR  L+ +   R    G   + + + D +    
Sbjct: 631 EAINAILPVHDYDPDSYIFFATAKGTVKRTSLAQFSRPRS--VGLIAIDLEEGDRLVGAA 688

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP------ 635
           I S     +  SS G   +     +      ARG  +  +  L+  E I+ I+P      
Sbjct: 689 ITSGSDHAMLLSSNGKAIRFDESNVRAMGRTARG--VRGMRLLDGAEVISLIIPRSQLID 746

Query: 636 ---------FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDE 683
                       +      +Y++ A+++G  +R +L +F    R G   IAM+       
Sbjct: 747 AEDQDDAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERNGS 806

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++       ++++L T  G  VR  +  + + + RN+ GV  I L + + ++    V  
Sbjct: 807 LVAAMQVYASDEMMLITDKGTLVRTRVDEVSI-SSRNTQGVMLIRLGESESLVK--TVRI 863

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + +  +        +A     S + E  T+  +D 
Sbjct: 864 DEPEEVDAAEVDPEDAAVESGQSEEGEGDTTQPSDE 899


>gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 900

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 631/894 (70%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  VSI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+ AIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  IDNP++ LD L+E++ GPDFPTG +ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++ EV++IIR + +P  A REL+ + W  S   + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+QT+AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 GLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMVVTV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVVTVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR Q RGGKG+ G  +++ED +T LF+ +THTS+LFFS+ G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L+ GE IT IMP P    +  N  +VF T HGN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLSDGETITNIMPLPS--ENDENQNIVFVTAHGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D ++SV+ C++ + +LL+T LG+ +RF +S +R F  RNS GVRGI LAK 
Sbjct: 660 KIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLAKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A +RL +     I S    +  +  I  +   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLA-KRLGTAINNFIDSKLEKTLNDLGIDNKLFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/911 (43%), Positives = 556/911 (61%), Gaps = 78/911 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEVRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP+  +D L+E+I  PDFPTG +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSVDELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVV 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IVV  IPYQVNK  + E+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +VILN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVILNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIHYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM R+W++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                 S+ +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 EMLSRADLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDVMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS  G VY  KVW +P G+  +RG+ ++N+  L  GE+IT ++P  E      + YV 
Sbjct: 602 LCFSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKE---FSEDNYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R    RN+ GVRG++L  G  VI++                         L++GD 
Sbjct: 719 ENDVRPMG-RNARGVRGMTLEDGQSVIAL-------------------------LVAGD- 751

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRTS  ++    R  KG+ A
Sbjct: 752 --------------------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + S     
Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGS 843

Query: 890 RVVSVERIRES 900
            +  V R+ ES
Sbjct: 844 SLSGVRRVVES 854



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 14/256 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        ++ V   +  G VK+ PLS +   R+   G   V + + D++    
Sbjct: 640 EKITVVLPVKEFSEDNYVFMATSRGTVKKTPLSDFSNPRKA--GIIAVGLDEGDYLIGAD 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  ++L  G+ +  ++      +
Sbjct: 698 LTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG---VRGMTLEDGQSVIALLV-----A 749

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
              +  V+ AT++G  +R  ++++ +  R  K  + + +     +++        ++I+L
Sbjct: 750 GDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIML 809

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S IR    R + GV  IS+  G  +  +  V+ +DAD D+        
Sbjct: 810 ITTGGVLVRTRVSEIREMG-RATQGVTLISVDDGSSLSGVRRVVESDADADDEDAEATDA 868

Query: 759 SAQRRLISGDTEEITS 774
           +      S +  E T 
Sbjct: 869 NDGESGASPEPTEPTE 884


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/905 (45%), Positives = 572/905 (63%), Gaps = 69/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+ID P + ++ LME I GPDFPT A++ GR GI++AY TGRG  V+R  
Sbjct: 186 NLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAIVNGRKGIEDAYKTGRGKAVMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ+ F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 VKRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W   +++ +++ 
Sbjct: 366 VFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I 
Sbjct: 426 AGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V +     RRT +    +D+  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ +IN+L L +GERIT I+P  E ++   + YV+ AT HG V++  L  +
Sbjct: 606 LPLASRQARGRPIINLLPLAEGERITAILPVREYDA---DKYVIMATSHGTVKKTSLDQY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D+++ V+    +N+++L +  G+ VRF    +R    R + GVR
Sbjct: 663 SRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVRGMG-RTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  G  V+S+ +                                             
Sbjct: 722 GIKLEDGQSVVSLIV--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT   ++   +R+ KG+ +  VS+ N  GA+V   
Sbjct: 737 --------PKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERN--GAVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +ND+I+L+SDKGTL+R P + +    R T+GV I  TA DE VV ++RI   EI DE
Sbjct: 787 QVLENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGLQRI--DEIQDE 844

Query: 906 AESTE 910
            E  E
Sbjct: 845 QEFDE 849



 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 110/264 (41%), Gaps = 17/264 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V+  +  G VK+  L  Y   R    G   V ++D D +  + 
Sbjct: 628 ERITAILPVREYDADKYVIMATSHGTVKKTSLDQYSRPR--ANGIIAVNLKDGDQLIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I +    V+ FS+ G V +    ++      A G   +  + L  G+ + +++       
Sbjct: 686 ITNGDNEVMLFSNEGKVVRFSEDQVRGMGRTATG---VRGIKLEDGQSVVSLIV------ 736

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
             N+  ++  T++G  +R +L ++   +R+  G +++K+      ++      + ++I+L
Sbjct: 737 PKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERNGAVVGAVQVLENDEIML 796

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERICYMK 756
            +  G  VR P S +     RN+ GV  I  A  + V+ +  +  +  + ++DE    + 
Sbjct: 797 ISDKGTLVRTPASGVSTIG-RNTQGVTIIRTATDETVVGLQRIDEIQDEQEFDEEGNPII 855

Query: 757 HMSAQRRLISGDTEEITSLKNDSS 780
             + + + + G+  E       + 
Sbjct: 856 TDTVEEQQVEGEAPEAEPDVEPNE 879


>gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44]
 gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44]
          Length = 898

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/924 (41%), Positives = 561/924 (60%), Gaps = 69/924 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +  +G   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL +VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   E+ S   + +
Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDHF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG+++ +   VI+M +    D   +                  
Sbjct: 722 FDENDVRPMG-RNARGVRGMNIEEHQNVIAMLVAEADDGTGN------------------ 762

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +    Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 763 -------------------------VVAGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +  +
Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDE 855

Query: 888 DERVVSVERIRESEIVDEA-ESTE 910
             +++ ++RI E++  D A E  E
Sbjct: 856 GAKLIGLQRIVENDANDNAGEDGE 879


>gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2]
          Length = 898

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/924 (41%), Positives = 562/924 (60%), Gaps = 69/924 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS QEP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +  +G   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL +VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   E+ S   + +
Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDHF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG+++ +   VI+M +    D   +                  
Sbjct: 722 FDENDVRPMG-RNARGVRGMNIEEHQNVIAMLVAEADDGTGN------------------ 762

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +    Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 763 -------------------------VVAGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +  +
Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDE 855

Query: 888 DERVVSVERIRESEIVDEA-ESTE 910
             +++ ++RI E++  D A E  E
Sbjct: 856 GAKLIGLQRIVENDANDNAGEDGE 879


>gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong]
 gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong]
          Length = 905

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/906 (51%), Positives = 652/906 (71%), Gaps = 8/906 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E +E  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G 
Sbjct: 1   MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK+Y K AR+ G+V+GKYHPHG  A+YD+L RMAQD+SLRL L++GQGNFGS+DGD  
Sbjct: 61  HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG  QEP VL A +PN+LVNG GGIAVG
Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD C A IDN +I +  LME+++GPDFPTG  I+G  GIK+AY TGR
Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG + IE  S  +  I++TEIP+ VNKA+++EKIAELV +KRI  I+ +RDES++
Sbjct: 241 GKIIVRGKTDIESDSL-KHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+   P+  TL  I+ AF  FR
Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+  LM R WN S
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ DL+ L+DD +  +  DG  +L+E QT++ILELRL RLT   R  + +ELN+L  EIK
Sbjct: 420 DVYDLVKLVDDRA-ILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL SR +LL  +K EL  +K++  T R T I     + + ED I  E++VVTV+  
Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTARLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPLS YRAQ+RGGKGR G  +++ED +T LFI +THTS+LFFS++G VY  KV++
Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+     Y++FATKHGN+RRN LSD
Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +GKIA++LD  D ++SV++C +EN +LL T+ G+ +RFP+  +RVF  R S GV
Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I LA  D VISM I+   +   + R  Y+    + R LI+ +     S+      + N
Sbjct: 719 KAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSI---DLSKYN 775

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E+    +   E+FILTVSE G+GK +S+Y++R++ R GKG+   +VS  ++ G +V+V
Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVS--SKTGKVVSV 833

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            P   +++++L++  G LIR  +N +RI  R+T GV++F T+KDE+VVS++ I++++  D
Sbjct: 834 LPACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893

Query: 905 EAESTE 910
           +    E
Sbjct: 894 DCSDDE 899


>gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908]
 gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908]
          Length = 905

 Score =  831 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/924 (44%), Positives = 561/924 (60%), Gaps = 86/924 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+NPD+ ++ LME I GPDFPT  +I GR GI +AY TGRG  V+R  
Sbjct: 186 NLNEVVSGCLALIENPDLTINELMEYIPGPDFPTAGIINGRKGIIDAYHTGRGRAVMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E
Sbjct: 246 AEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +QS F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+   W   +++ +++ 
Sbjct: 366 VFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++NIL L++GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNILPLSEGERITAILPVREYAE---DKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+     NDI+L +  G+ VRF   A             
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKLDPE 722

Query: 717 ----------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                      GR + GVRGI L  G QV+S+ +                          
Sbjct: 723 TGEEMIALRAMGRTATGVRGIKLEDGQQVVSLIV-------------------------- 756

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                         E  ILTV+E GFGKRT   ++   +R  KG
Sbjct: 757 ---------------------------PKGEGDILTVTENGFGKRTDLAEYPAKSRGTKG 789

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  TA
Sbjct: 790 VVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTA 847

Query: 887 KDERVVSVERIRE-SEIVDEAEST 909
           +DE+VV ++RI E  E   E +  
Sbjct: 848 EDEKVVGLQRIDEIQEPAPELDEE 871


>gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
 gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
          Length = 893

 Score =  831 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 566/906 (62%), Gaps = 70/906 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 34  DQFAKETLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 93

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD PAA R
Sbjct: 94  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMR 153

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH +L DL K+TVDF PNYDG+ +EP++L  + PN+L+NG  GIAVGMATN
Sbjct: 154 YTEIRMSRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATN 213

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV D C+A++ NP+I ++ L+E+I GPDFPT A+I G TG+K  Y TGRG ++
Sbjct: 214 IPPHNLNEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIYGVTGVKEGYRTGRGRVI 273

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +H E     G R+ IV+ E+PYQVNKA +L +I ELVR+K+I  I+DLRDESD+ G
Sbjct: 274 MRARTHFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSG 333

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R    +V+LN LY+ T +Q  F +NMVAL   +P    L  +L+AF+  R E
Sbjct: 334 MRVVIELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRRE 393

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+ + L KAR+R HVL GLA+A++N+DEV+ +I+ +  P  A+  LM R W +  +
Sbjct: 394 VVTRRSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLV 453

Query: 428 KDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + ++      +     +G            +LS+ Q +AILELRL RLTGL +D I +E 
Sbjct: 454 EQMLARAAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQDKIVSEY 513

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I + LDIL+   R+  II +EL+++K +    RR+ IV    D+  ED I  ED
Sbjct: 514 RDVMERIADLLDILARPERITAIITEELVAMKQQFGDKRRSEIVINTQDLSMEDLIASED 573

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K  PL  YRAQ+RGG+G+     +D+DF+ +LFI +TH  +L FSS G 
Sbjct: 574 VVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILCFSSRGR 633

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  KV+ +P G   +RG+ ++N++ L  GE+I  ++P    ++  +N YV  AT  G V
Sbjct: 634 VYWIKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPI---KTFDDNRYVFMATSLGTV 690

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  LS+F +   SG IA+ LD  D ++ V     ++D++L +  G+ VRF  + +R   
Sbjct: 691 KKTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPMG 750

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GVRG++L KG +VIS+ +                                     
Sbjct: 751 -RGARGVRGMTLGKGQKVISLLVA------------------------------------ 773

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                           + +EQ +LT +E G+GKRT   ++    R  +G+ A   ++ N 
Sbjct: 774 ----------------ESEEQAVLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRN- 816

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V ++D+I+L++  G LIR  V E+R  SRAT+GV++ +  + E++  +ER+
Sbjct: 817 -GKVVGARLVREDDEIMLITTGGVLIRTRVKEVREMSRATQGVILINLDEGEKLAGLERV 875

Query: 898 RESEIV 903
            E++  
Sbjct: 876 VETDEA 881


>gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
 gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
          Length = 905

 Score =  831 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/906 (51%), Positives = 648/906 (71%), Gaps = 8/906 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E +E  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G 
Sbjct: 1   MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK+Y K AR+ G+V+GKYHPHG  A+YD+L RMAQD+SLRL L++GQGNFGS+DGD  
Sbjct: 61  HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG  QEP VL A +PN+LVNG GGIAVG
Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD C A IDN DI +  LME+++GPDFPTG  I+G  GIK+AY TGR
Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG + IE  S  +  I++TEIP+ VNKA+++EKIAELV +K+I  I+ +RDES++
Sbjct: 241 GKIIVRGKTDIESDSL-KHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+   P+  TL  I+ AF  FR
Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+  LM R WN S
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNIS 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ DL+ L+DD +  +  DG  +L+E QT++ILELRL RLT   R  + +ELN+L  EIK
Sbjct: 420 DVYDLVKLVDDRA-ILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL SR +LL  +K EL  +K++  T R T I     + + ED I  E++VVTV+  
Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTTRLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPLS YRAQ+RGGKGR G  +++ED +T LFI +THTS+LFFS++G VY  KV++
Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+     Y++FATKHGN+RRN LSD
Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +GKIA++LD  D ++SV++C + N +LL T+ G+ +RFP+  +RVF  R S GV
Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I LA  D VISM I+   +   + R  Y+      R LI+ +    +   N    + N
Sbjct: 719 KAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIAKNK---SLQPNIDLSKYN 775

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E+    +   E+FILTVSE G+GK +S+Y++R++ R GKGI   +VS   + G +V+V
Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSP--KTGKVVSV 833

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
                +++++L++  G LIR  +N +RI  R+T GV++F T+KDE+VVS++ I++++  D
Sbjct: 834 LSACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893

Query: 905 EAESTE 910
           +    E
Sbjct: 894 DCSDDE 899


>gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium]
          Length = 890

 Score =  831 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/889 (48%), Positives = 621/889 (69%), Gaps = 12/889 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  + + +EM+ SYL YA++VI+ RA+PD+RDG K VHRRIL+ + ++G +  K + K
Sbjct: 8   DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I GEVMGKYHPHG++AIY+ + RMAQD+S+ + LI+GQGNFGS+DGD  AA RYTE 
Sbjct: 68  SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +  +L DL  +TV FRPNYDGS QEP VL  R P++L+NG  GIAVGMATNIP H
Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++D C A+++NP ++L  +ME ++GPDFPTG  ILG +GI NA+ TGRGSIV+RG 
Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVMRGK 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+  GD+E IVVTEIPYQVNKA ++EKI EL R+K +  I ++RDES+R G R+VIE
Sbjct: 248 ASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVIE 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR  ++ VILNQLY++T LQ  FS N++AL    P+   L   L  F+ FR +V+VRRT
Sbjct: 308 IKRDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVIVRRT 367

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KARD+AH+L+G A+A++++D+V+ +I+ + + ++A   LM  +W+A+ IK  + L
Sbjct: 368 RYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYLAL 427

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +       G      LSE+Q  AIL+LRL +LTG+ +++I+++L S    I+E +DIL  
Sbjct: 428 LQGPQAESGP--YYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGK 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+  I+  E  ++K +  TPRR+ I+    D+EDED I  E+MVVT+S  GY+KRVPL
Sbjct: 486 PERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVTISFGGYIKRVPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGGKGRSG+ M++ED+V D+ + +TH  +LFF+++G VY+  V +LPIG+PQA
Sbjct: 546 STYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQLPIGTPQA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+A+IN+L + + E+IT+I+     +   +   ++F T  G VRRN +SDF +I  +GK
Sbjct: 606 KGRAIINVLPIEKDEKITSILDVS--KEMDDASTLLFITSKGQVRRNAVSDFERIQSNGK 663

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            AM L+  + +++V+TC  +N +LL T+ G  +RF  + +RVF+GR S GVRGI LA  D
Sbjct: 664 RAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDD 723

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +IS +++   + D  ER  Y++   A  R I G+TE+      D++VEG +S+ER  EL
Sbjct: 724 TIISASVLEGFNVDPAERALYLR-ARAAERGIQGETED-----QDTTVEGALSDERLLEL 777

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +  EQ+ILT+++ GFGKRTS Y++R + R G G     +S  N  G +V  FPV   DQI
Sbjct: 778 QEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKN--GHVVNAFPVIPQDQI 835

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +L+++KG L+R  VN+IRIA R T+GV++    KDERVV+V RI E+E 
Sbjct: 836 MLITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEE 884


>gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047]
 gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3047]
          Length = 880

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/913 (45%), Positives = 584/913 (63%), Gaps = 43/913 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+T++F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRESEIVDEAES 908
           R+ +++  D  E 
Sbjct: 863 RVCDADEEDSLEE 875


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/906 (44%), Positives = 568/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A+I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+  SW   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 EAESTE 910
           E    E
Sbjct: 847 EILDGE 852


>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
 gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
          Length = 879

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/893 (44%), Positives = 576/893 (64%), Gaps = 63/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + ++ ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K
Sbjct: 6   REVSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF  NYDG+ + P VL  + PN++VNG  GIAVGMATNIP H
Sbjct: 126 RMEKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++G +A+IDNP+I ++ LME I GPDFPT A I GR+GI  AY TGRG I +R  
Sbjct: 186 NLTEVINGTLALIDNPEISIEELMEFIPGPDFPTAASISGRSGIVEAYKTGRGRIHLRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++RG   +V+LN LY  T +Q +F +NMVAL+  +P+ F L  +L AFV  R EVV RR
Sbjct: 306 EIRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQPKLFNLYQVLDAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + Y L KAR+RAH+L GLAI++AN+DEV+ +IR SP P  A++ L+ R W   ++  +++
Sbjct: 366 SVYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG+ YL+E Q +AIL+LRL +LTGL  + I +E   L  +I
Sbjct: 426 SAGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L IL S  RL+ +I++EL+ ++D     R+T I     D+  ED I  ED+VVT+SH
Sbjct: 486 EELLHILRSTERLMEVIREELVEIRDNFGDARKTEITAAAHDISMEDLINEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG++   M+D+DFV  L++ +TH ++L FS+ G +Y  KV+
Sbjct: 546 EGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRGRIYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  +RGK ++N+L L   ERIT I+P  +      + +V+ ATKHG V++  L +
Sbjct: 606 QLPLASRASRGKPIVNLLPLESDERITAILPTRDY---PEDKFVIMATKHGTVKKTPLPE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +    G IA+ L+  DE++ V+    E +I+L +  G+ VRF    +R    R + GV
Sbjct: 663 YSRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +G +V+S+ +    + +                                     
Sbjct: 722 RGIRLEEGQKVVSLIVPGTYEDE------------------------------------- 744

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      ++  ILTV+E GFGKRT   ++   +R+ KG+ +  VS+ N  GA+V  
Sbjct: 745 -----------QQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERN--GAVVGA 791

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D ++I+L+S+KGTL+R  VNE+ +  R T+GV +  T  DE+VV ++RI
Sbjct: 792 MEVVDGNEIMLISNKGTLVRTRVNEVSMVGRNTQGVRLIRTGDDEQVVGLQRI 844


>gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
 gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
          Length = 898

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/924 (41%), Positives = 559/924 (60%), Gaps = 69/924 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +  +G   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL +VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   E+ S   + Y
Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRSFPEDHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG+++ +   VI+M +    D   +                  
Sbjct: 722 FDENDVRPMG-RNARGVRGMNIEEHQNVIAMLVAEADDGTGN------------------ 762

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +    Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 763 -------------------------VVAGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +   
Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDA 855

Query: 888 DERVVSVERIRESEIVDEA-ESTE 910
             +++ ++RI E++  D A E  E
Sbjct: 856 GAKLIGLQRIVENDANDGAGEDGE 879


>gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 889

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/904 (44%), Positives = 565/904 (62%), Gaps = 71/904 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGREGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQ++F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVM 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 TMVERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P  S  ARG+ L+N+L L++GE ITT++P    E      Y+  AT +G V++
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLDEGEYITTMLPV---EEYTEGHYIFMATANGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R    R
Sbjct: 659 TPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ LA+G ++ISM I                                       
Sbjct: 718 TARGVRGMRLAEGQKLISMLI--------------------------------------- 738

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                           +   ILT SE+GFGKRT+  +F    R G+G+ A   ++ N  G
Sbjct: 739 --------------PEEGSQILTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERN--G 782

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    V D ++I+L+SD+GTL+R  V+E+    R T+GV +   A DE +V +ER++E
Sbjct: 783 RLVGAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQE 842

Query: 900 SEIV 903
              +
Sbjct: 843 PSEI 846



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 102/269 (37%), Gaps = 15/269 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M   +       +   +  G VK+ PL  +  QR    G   + + + D +    
Sbjct: 630 EYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRS--VGLIALELDEGDVLISAA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      V+ FS  G V + K   +      ARG   +  + L +G+++ +++  PE+ S
Sbjct: 688 ITDGEREVMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLAEGQKLISML-IPEEGS 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILL 698
                 ++ A++ G  +R  + +F +  R G   IAM  +     ++         +I+L
Sbjct: 744 Q-----ILTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  +  +     RN+ GV  I LA  + ++ +  V        E     +  
Sbjct: 799 ISDQGTLVRTRVDEVSSLG-RNTQGVTLIKLASDETLVGLERVQEPSEIEGEEFEGEEGA 857

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISE 787
             +  ++    +   + +   +      E
Sbjct: 858 EFEGAVLDAVADTDEAAEGQQADAAGEEE 886


>gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 904

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/925 (43%), Positives = 565/925 (61%), Gaps = 88/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV GC+A+I+NPD+ ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  
Sbjct: 186 NINEVVSGCLALIENPDLTINELMEYIPGPDFPTAAIINGRKGIIDAYHTGRGRAVMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E
Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+   W    ++ +++ 
Sbjct: 366 VFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++NIL L++GERIT I+P  E     ++ Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNILPLSEGERITAILPVREYA---DDKYIIMATAHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    E++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 A+R    R + GVRGI L    +V+S+ +                         
Sbjct: 723 TGEEVLALRPMG-RTATGVRGIRLEDDQKVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  ILTV+E G+GKRT   ++   +R+ K
Sbjct: 757 ----------------------------PKDDGAILTVTENGYGKRTDLSEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  +S+ N  GA+V    V +ND+I+L+SDKGTL+R P   +    R T+GV I  T
Sbjct: 789 GVVSIKISERN--GAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
           A++E+VV ++RI E +  DE E  E
Sbjct: 847 AEEEKVVGLQRIDEIQ-DDEVELDE 870



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 71/473 (15%), Positives = 168/473 (35%), Gaps = 52/473 (10%)

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T             ++     + +L +  +   ++  L   + + + ++ +I      
Sbjct: 448 YLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIAALLYILRSPERLMEVIT--EEL 505

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLG 469
           +              +  ++   ++D         T+ +L   + +A+ + +  R  G G
Sbjct: 506 QEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLGYAKYQALTDYQAQRRGGKG 565

Query: 470 R--DDIRNE--LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---- 521
           +    +++E  +  L +       +  S    +  +K   L +     T R   IV    
Sbjct: 566 KAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLPLASR--TARGRPIVNILP 623

Query: 522 ----EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
               E +  +        +  ++  +  G VK+  L+ Y   R    G   V ++D D +
Sbjct: 624 LSEGERITAILPVREYADDKYIIMATAHGTVKKTALTAYSNPR--ANGIIAVNLKDGDQL 681

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEK--------------------VWRLPIGSPQARGKA 617
             + I +    ++ FS  G V +                      V  L      A G  
Sbjct: 682 IGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLDPETGEEVLALRPMGRTATG-- 739

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIA 675
            +  + L   +++ +++   +D +      ++  T++G  +R  LS++   +R+  G ++
Sbjct: 740 -VRGIRLEDDQKVVSLIVPKDDGA------ILTVTENGYGKRTDLSEYPAKSRATKGVVS 792

Query: 676 MKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +K+      ++      + ++I+L +  G  VR P + +     RN+ GV  I  A+ ++
Sbjct: 793 IKISERNGAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIG-RNTQGVTIIRTAEEEK 851

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           V+ +  +     D  E       +          T E+ + K D + E   +E
Sbjct: 852 VVGLQRIDEIQDDEVELDEEGNPIVPATDEAVETTSEVDTPKADDAPEAEPAE 904


>gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli]
          Length = 878

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/907 (44%), Positives = 576/907 (63%), Gaps = 71/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD+V+S+ +     A                                      
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786

Query: 845 FPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             V+D DQ   I++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E  
Sbjct: 787 VQVDDCDQIMMIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPV 846

Query: 902 IVDEAES 908
             ++ ++
Sbjct: 847 DEEDLDT 853



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 112/272 (41%), Gaps = 29/272 (10%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEIL---- 685
           +++    D +      ++ AT++G  +R  ++++   +R+  G I++K+  R+ ++    
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            V+ C Q   I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V    
Sbjct: 788 QVDDCDQIMMIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPV 846

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            + D              +      +    + 
Sbjct: 847 DEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE 878


>gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 933

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/918 (50%), Positives = 632/918 (68%), Gaps = 12/918 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I  D      +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTE--IPDDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 59  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG  
Sbjct: 119 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN GE++D  +A+I+ PD+ LD L++ + GPDFPTG  ILGR GI++A
Sbjct: 179 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTILGRAGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS++IR  + IE+   DR  I+VTEIPYQVNKA + E+IA+LVR K++  I+D+R
Sbjct: 239 FETGRGSVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P    L  +L+A
Sbjct: 299 DESDRSGMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLEA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V++RR ++ LNKARDRAH+LVGL IAVAN+D V+ +IR +P+   AR  LM R
Sbjct: 359 FIRFREDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W+A+D+  L++LI D    I  DG ++L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 419 GWDAADVAPLLELIHDEGNVI-VDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEV 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            + I + L+I++SR R + +++ EL+S++ EL TPR T I +   D  DE  I    MVV
Sbjct: 478 AVRINDLLEIIASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQTDESLIEPGQMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D +   F   TH  VLFFSS G  Y+
Sbjct: 538 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKAYR 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L     + IT ++P P+DE  W NL++VFAT  G+VRRN
Sbjct: 598 EKVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI--RVFAG 718
           +LSDF  I  SG IAMKL+  D ++ V TC +  D+ L T+  +C+RF I+    RVFAG
Sbjct: 658 RLSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----- 773
           R S GVRGI LA+GD V S+ ++ H DA  +ER  Y++  +A+RR  +   +E T     
Sbjct: 718 RGSSGVRGIRLAEGDSVNSLCVLNHVDATVEERAAYLRMANARRRAEAAQEDEETDEITA 777

Query: 774 -SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                  + +  ++ ER  EL+  E+ +L VS  GFG+R+S+YD+R+S R G+GI     
Sbjct: 778 GDDAEIPADDLPLTPERFAELEAAEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMTF 837

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S      A+VA  PV +   ++LV+D G LIR+P+ ++RI SR   GV +F     E V 
Sbjct: 838 SANKRGNAVVATLPVLEGTDVMLVTDAGRLIRLPIGQVRIMSRQASGVTLFRLNDTEEVT 897

Query: 893 SVERIRESEIVDEAESTE 910
           SV  +   +  D  E ++
Sbjct: 898 SVFPVM-DDGEDGGEDSD 914


>gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
 gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
          Length = 855

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/908 (42%), Positives = 559/908 (61%), Gaps = 67/908 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   +N+ 
Sbjct: 3   QFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H +L D+ K+TVDF PNYDGS  EP+++  R PN+L+NG  GIAVGMATN 
Sbjct: 123 TEIRMSKISHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNF 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A++  P+  +D LME I GPDFPT  +I G +G+++ Y TGRG +V+
Sbjct: 183 PPHNLTEVINGLLALLQKPETSIDELMEFIPGPDFPTSGIIHGISGVRDGYRTGRGRVVM 242

Query: 251 RGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           RG +H+E    G+RE I+V E+PYQVNK   +EKIAELV +K+I  I+DLRDESD+ G R
Sbjct: 243 RGKTHVESLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELK+G   +VILN LY+ T LQ  F +NMVAL   +P    L  IL AF+  R EV+
Sbjct: 303 VVIELKKGEIPEVILNNLYKQTQLQDNFGMNMVALIDGQPRLLNLREILDAFLKHRREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GLA+A+AN+DE+++II+ +P P  A++ELM+RSW +  +  
Sbjct: 363 TRRTVYELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDVVSS 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++                    +    LS+ Q + IL+LRL RLTGL ++ I  E +++ 
Sbjct: 423 MLKKSSQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIM 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           + I + LDIL+   R+  II +EL  ++ +    RR+ IV    D+  ED I  +DMVVT
Sbjct: 483 VTIIDLLDILNKSERVTSIISEELTEIRSQYGDDRRSEIVTDAYDLSIEDLIAPQDMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY+K   L  YRAQ+RGG+G+  +  +++DF+  +F+ ++H ++L FSS G VY  
Sbjct: 543 LSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P GS  +RGK ++N+  L  GE+I  I+   +     ++ Y+  AT  G V++  
Sbjct: 603 KVYEVPQGSRISRGKPIVNLFPLMPGEKINAILAVKD---FVDDEYIFMATAKGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF    +SG IA+KL + D ++       E DI+L +  G+ V F    +R    RN+
Sbjct: 660 LSDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSMG-RNA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   +QV+S+ I    +                                    
Sbjct: 719 AGVRGMKLPDTEQVLSLLIASSNEES---------------------------------- 744

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L  +E G+GKRT   +FR S R  +G++A  VS  N  G +
Sbjct: 745 ------------------VLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVSDRN--GIV 784

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V D+D+I+L++  G LIR  V+EIR   RAT+GV + + +  E++  +E+I ES+
Sbjct: 785 VAAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDGEKLSGIEKIVESD 844

Query: 902 IVDEAEST 909
            +D+ +  
Sbjct: 845 HIDDGQDD 852


>gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
 gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
          Length = 880

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/913 (45%), Positives = 585/913 (64%), Gaps = 43/913 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKITLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  ++E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRESEIVDEAES 908
           R+ +++  D  E 
Sbjct: 863 RVCDADEEDSLEE 875


>gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 885

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/901 (44%), Positives = 564/901 (62%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+  SW   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYNDVRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae 10810]
          Length = 880

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1]
 gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans]
 gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1]
          Length = 888

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/926 (42%), Positives = 557/926 (60%), Gaps = 80/926 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +H +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKISHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  P   +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + + +DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDILS   R+  II  EL  +K E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   E  S   + Y
Sbjct: 602 LLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GV+G++L +G  VI+M +                           
Sbjct: 722 FDENDVRPMG-RNARGVKGMNLEEGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846

Query: 888 DERVVSVERIRE---SEIVDEAESTE 910
             ++  ++RI E   SE+ DEA   E
Sbjct: 847 GAKLGGLQRIVENDASEVEDEATGEE 872



 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 102/246 (41%), Gaps = 14/246 (5%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +      +  V   + +G VK+  L  +   R+   G   V + + DF+    +      
Sbjct: 652 EYRSFPADHYVFMSTSMGTVKKTALDEFSNPRKA--GIIAVGLDEGDFLIGAALTDGKHD 709

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ FS  G   +     +      ARG   +  ++L +G+ +  ++   EDES      V
Sbjct: 710 VMLFSDGGKAVRFDENDVRPMGRNARG---VKGMNLEEGQSVIAML-VAEDESQS----V 761

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  + ++ +  R  K  + +       ++++      +++I+L T  G  
Sbjct: 762 LTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  +S IR    R + GV  ISL +G ++  +  ++  DA   E     +  +      
Sbjct: 822 VRTRVSEIRELG-RATQGVTLISLDEGAKLGGLQRIVENDASEVEDEATGEEATGGDEAA 880

Query: 766 SGDTEE 771
           +  T E
Sbjct: 881 AEGTGE 886


>gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
 gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
          Length = 933

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/901 (49%), Positives = 600/901 (66%), Gaps = 21/901 (2%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+ I  +      G   + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   
Sbjct: 5   TDIIDPASPAPADGYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASK 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
                  + YVK A+I G+VMG +HPHG+ AIYDALAR+ Q WS+R+ L++GQGNFGS D
Sbjct: 65  LGNFVAGRPYVKSAKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNFGSPD 124

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DPPA+ RYTE RL + +  LLDDL KDTVDF  NYDG  QEP VL AR+PN+LVNG GG
Sbjct: 125 PDPPASMRYTEARLARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVNGAGG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+P HNLGEV+DGC+A ++NP I  + L+E I GPDFPT  +ILG +G K AY
Sbjct: 185 IAVGMATNVPPHNLGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAPLILGTSGAKAAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI++R    IE   GDRE IV T IPYQV +A ++EKIAE  ++KRI  I+D+RD
Sbjct: 245 TTGRGSILMRCRHEIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGISDIRD 304

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES+R G R+VI+LKR A+A+V+LNQ++R+T  QS F  NM+A+ G +PE   L   ++AF
Sbjct: 305 ESNRDGTRIVIDLKRDATAEVVLNQIWRHTPAQSGFPANMLAIRGGRPETLMLRDFIQAF 364

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FREEV+ RRTK+ LNKAR+RAH+L+GL +AV+NLDEVV IIR +PNP TAR  L+ + 
Sbjct: 365 ISFREEVITRRTKFELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARERLLTKE 424

Query: 422 WNASDIKDLIDLIDDSSYTI-GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           W   DI   I L++    +     GT  LS  Q +AIL+LRL RLT LGRD+I +EL  L
Sbjct: 425 WPIGDIAQYIRLVEAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDELKEL 484

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+E L IL+ R +L  ++++EL  ++    TPR + I      ++DED I R+DMVV
Sbjct: 485 AEKIEEFLAILADRVKLYEVMREELEEIRATYATPRISEIAPAWDGLDDEDLIERDDMVV 544

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PLS +RAQ RGGKGR+G+  +DED + ++F+ STH  VLFFS+ G VY+
Sbjct: 545 TVTLDGYIKRTPLSTFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVLFFSTAGKVYR 604

Query: 601 EKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            KVW+LP G P  RG+ +IN+L  L+  E I T++P PEDE  W  L VVFAT  GNVRR
Sbjct: 605 LKVWKLPEGGPTTRGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVVFATAKGNVRR 664

Query: 660 NKLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           N +  F  I  +GK AMK D    D ++ V      +D++L +K G+ +RF    +R F 
Sbjct: 665 NSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIRFAAEDVREFT 724

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R S GVRG+ LA GD+V+S++ +       +ER  Y+K                   K 
Sbjct: 725 SRTSTGVRGMKLADGDEVVSLSTLGATGTTPEEREQYIKFAPW---------------KG 769

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +   + +++ ER   LK KEQFILTV   G+GK +SSY++R + R G+G+   D   I+ 
Sbjct: 770 EKEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNID--NIDR 827

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G++VA F V   +Q++LV+D+  LIR+ +  +R+  R T GV +F+  K+E VVS  +I
Sbjct: 828 NGSVVASFVVQTGEQLMLVTDQAKLIRIGLESLRVMGRNTAGVRLFTVGKNEHVVSAVKI 887

Query: 898 R 898
            
Sbjct: 888 D 888



 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 102/285 (35%), Gaps = 40/285 (14%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VV  +  G V+R  +  +      GK         ED +  + +V+    V+  S  G  
Sbjct: 653 VVFATAKGNVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKA 712

Query: 599 YKEKVWRLPI-GSPQARGKALINILSLNQGERITTI------------------------ 633
            +     +    S  + G   +  + L  G+ + ++                        
Sbjct: 713 IRFAAEDVREFTSRTSTG---VRGMKLADGDEVVSLSTLGATGTTPEEREQYIKFAPWKG 769

Query: 634 --------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE-- 683
                    P   D       +++    +G  + +   ++ +  R G+  + +D+ D   
Sbjct: 770 EKEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNIDNIDRNG 829

Query: 684 -ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++         ++L T   + +R  + ++RV   RN+ GVR  ++ K + V+S   + 
Sbjct: 830 SVVASFVVQTGEQLMLVTDQAKLIRIGLESLRVMG-RNTAGVRLFTVGKNEHVVSAVKID 888

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             +   +E    +     +RR    +T   T++ +D ++  +  E
Sbjct: 889 ETEEPENEAEEAIVEEMVERRGGGDETTPDTTVHSDDNLGEDPPE 933


>gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
 gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
          Length = 880

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/905 (46%), Positives = 583/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ DL    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + EEI+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILTV++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/901 (44%), Positives = 563/901 (62%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 E 905
           +
Sbjct: 847 D 847


>gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
          Length = 880

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ DL    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++ ++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEALLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/906 (44%), Positives = 565/906 (62%), Gaps = 69/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ DI ++ LME I GPDFPTGA+I GR GI  AY TGRG + +R  
Sbjct: 186 NLSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVYVRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE-DD 845

Query: 905 EAESTE 910
           E E  E
Sbjct: 846 EFEGEE 851



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 170/457 (37%), Gaps = 38/457 (8%)

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN---LDEVVR--IIR 405
             T            +++     + LL++ ++   ++  L   + N   L EV+R  ++ 
Sbjct: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPERLMEVIREELVA 508

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
                  ARR  +  + +  +I+DLI+  D     + +       + Q  +  E +    
Sbjct: 509 IKEQYNDARRTEITANTSDINIEDLINQED----VVVTLSHQGYVKYQPLSDYEAQRRGG 564

Query: 466 TGLGRDDIRNE--LNSLG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV- 521
            G     I+ E  ++ L      + +   SSR RL      ++  + +     R   IV 
Sbjct: 565 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY---WMKVYQLPEASRGARGRPIVN 621

Query: 522 -------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
                  E +  +           V   +  G VK+  L+ +   R    G   V + + 
Sbjct: 622 LLPLEPNERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPRSA--GIIAVNLNEG 679

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +  + +      V+ FS+ G V +    ++      A G   +  ++LN  +R+ +++
Sbjct: 680 DELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI 736

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCT 691
               D        ++  T++G  +R  + ++   +R+  G I++K+     +++      
Sbjct: 737 IPRGDGE------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVA 790

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V   + D  E 
Sbjct: 791 PTDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDEHVVGLQRVAEPEDDEFEG 849

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
                   +        +E    +  + + +    E+
Sbjct: 850 EELDAEEGSAENTAQSASENTNDIATEENGDDEAPED 886


>gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
 gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
          Length = 880

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + EEI+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/906 (44%), Positives = 563/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 GEVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 EAESTE 910
           +    E
Sbjct: 847 DILDGE 852


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  828 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/906 (44%), Positives = 566/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTII 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVTPTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 EAESTE 910
           E    E
Sbjct: 847 EILDGE 852


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  828 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/900 (44%), Positives = 560/900 (62%), Gaps = 68/900 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMV L+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVGLSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDD 846



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 161/418 (38%), Gaps = 38/418 (9%)

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN---LDEVVR--IIR 405
             T            +++     + LL++ ++   V+  L   + N   L EV+R  ++ 
Sbjct: 449 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIAELIFILENPERLMEVIREELVA 508

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
                  ARR  +  + +  +I+DLI+  D     + +       + Q  +  E +    
Sbjct: 509 IKELYNDARRTEITANTSDINIEDLINQED----VVVTLSHQGYVKYQPLSDYEAQRRGG 564

Query: 466 TGLGRDDIRNE--LNSLG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV- 521
            G     I+ E  ++ L      + +   SSR RL      ++  + +     R   IV 
Sbjct: 565 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY---WMKVYQLPEASRGARGRPIVN 621

Query: 522 -------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
                  E +  +           +   +  G VK+  L+ +   R    G   V + + 
Sbjct: 622 LLPLEPNERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSA--GIIAVNLNEG 679

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +  + +      V+ FS+LG V +    ++      A G   +  ++LN  +R+ +++
Sbjct: 680 DELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMGRTATG---VRGINLNGDDRVISLI 736

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCT 691
               D        ++  T++G  +R  + ++   +R+  G I++K+     +++      
Sbjct: 737 IPRGDGE------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVA 790

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + I++ T  G  VR  +S + V   RN+ GV  I   + + V+ +  V   + D +
Sbjct: 791 PTDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTTEDEHVVGLQRVAEPEEDDN 847


>gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20]
 gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
 gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A
 gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20]
 gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
          Length = 880

 Score =  828 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 580/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A ID  +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866]
          Length = 880

 Score =  828 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + EEI+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010]
 gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010]
          Length = 859

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/900 (44%), Positives = 555/900 (61%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S+ I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  WN  Y K 
Sbjct: 7   ELDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K  H +L DL K+TVDF  NYD S  EP VL  + P +LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++  +A+IDNP+I +  LME I GPDFPT A+I G  GI  AYATGRG + IR  +
Sbjct: 187 LTEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGARGIAEAYATGRGRVHIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE   +  ++ IVV E+PYQVNKA +LEKIAELV+EK+I  I  LRDESD+ G R+VI 
Sbjct: 247 DIETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIV 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG   +V+LN LY+ T +Q++F +NMVA+   +P    L  +L AF+  R EVV RR+
Sbjct: 307 LRRGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQPRTLNLKDVLAAFIRHRREVVTRRS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
            + L KARDRAH+L GLA A+AN+DEV+ +I+ SPNP  A+  L+ R W +  I +++  
Sbjct: 367 IFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGE 426

Query: 432 -----DLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   +D     G      +LS  Q +AIL++RL RLTGL +D I  E   +   I 
Sbjct: 427 AGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILS    L+ +I+ EL+++  E    RRT I+   LD+  ED I  E+MVVT+SH 
Sbjct: 487 ELLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANHLDLTLEDLITEEEMVVTLSHA 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L  Y+AQ+RGGKG++   M+DEDF+  LFI +TH ++L FSS G VY +KV+ 
Sbjct: 547 GYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGKVYWKKVYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G   ARGK ++N+L L +GERI  ++   E E+   + ++  AT  G V++  L D+
Sbjct: 607 LPQGGRTARGKPIVNLLPLEEGERINAVLSIREFEA---DKFIFMATASGTVKKTPLVDY 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D+++ V      +DI+L +  G+ +RFP + +R    R S GVR
Sbjct: 664 SRPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSMG-RVSRGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ +A  +++IS+ I     A                                       
Sbjct: 723 GMRIADNEKIISLIIAQEEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT +E G+GKRT+  ++R+  R G+GI +   S  N  G++V   
Sbjct: 744 --------------ILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI+L+++ GTL+R PV ++ +  R T+GV + + +K+E++V VER+ E E   E
Sbjct: 788 QVCDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNEKLVGVERVLEDEEDAE 847


>gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
 gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
          Length = 908

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/896 (51%), Positives = 636/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 10  GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 70  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 190 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 429

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + DS+  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 430 VSDST-GVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L TPR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 489 DSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 548

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 549 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 608

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 609 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 668

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 669 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 728

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 729 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 787

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 788 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 845

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 846 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 901



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 55/272 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTT 700
                VV  T +G V+R KLS++    R GK  +A  +   D    +        +L  +
Sbjct: 529 PKEEMVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFS 588

Query: 701 KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +G+  +  +  + +   + R    V    L+ G+ + S+  +   D             
Sbjct: 589 NVGKVYKLKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCD------------- 635

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E+ +    ++  +  G  +R +  DF+
Sbjct: 636 --------------------------------DEVGIANLDVVFATASGNIRRNALSDFQ 663

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRAT 877
               SGK   A  ++  ++   L++       D ++L S  G  IR  V+ +R    R +
Sbjct: 664 YVPSSGK--IAMVLTPGDQ---LISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTS 718

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            GV     +  ++V+S+  +   E   E + +
Sbjct: 719 DGVRAIRLSAGDQVISMSVLHGIEASSELKES 750


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/900 (44%), Positives = 561/900 (62%), Gaps = 68/900 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDD 846


>gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia]
          Length = 902

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/896 (51%), Positives = 636/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + DS+  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 424 VSDST-GVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L TPR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 781

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 55/272 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTT 700
                VV  T +G V+R KLS++    R GK  +A  +   D    +        +L  +
Sbjct: 523 PKEEMVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFS 582

Query: 701 KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +G+  +  +  + +   + R    V    L+ G+ + S+  +   D             
Sbjct: 583 NVGKVYKLKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCD------------- 629

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E+ +    ++  +  G  +R +  DF+
Sbjct: 630 --------------------------------DEVGIANLDVVFATASGNIRRNALSDFQ 657

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRAT 877
               SGK   A  ++  ++   L++       D ++L S  G  IR  V+ +R    R +
Sbjct: 658 YVPSSGK--IAMVLTPGDQ---LISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTS 712

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            GV     +  ++V+S+  +   E   E + +
Sbjct: 713 DGVRAIRLSAGDQVISMSVLHGIEASSELKES 744


>gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis]
          Length = 888

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/924 (41%), Positives = 558/924 (60%), Gaps = 78/924 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  P   +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + + +DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDILS   R+  II  EL  +K E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   E  S   + Y
Sbjct: 602 LLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GV+G++L +G  VI+M +                           
Sbjct: 722 FDENDVRPMG-RNARGVKGMTLEEGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846

Query: 888 DERVVSVERIRESEIVD-EAESTE 910
             ++  ++RI E++  + E E+T+
Sbjct: 847 GAKLGGLQRIVENDANEVEGEATD 870



 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 102/246 (41%), Gaps = 14/246 (5%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +      +  V   + +G VK+  L  +   R+   G   V + + DF+    +      
Sbjct: 652 EYRSFPADHYVFMSTSMGTVKKTALDEFSNPRKA--GIIAVGLDEGDFLIGAALTDGKHD 709

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ FS  G   +     +      ARG   +  ++L +G+ +  ++   EDES      V
Sbjct: 710 VMLFSDGGKAVRFDENDVRPMGRNARG---VKGMTLEEGQSVIAML-VAEDESQS----V 761

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  + ++ +  R  K  + +       ++++      +++I+L T  G  
Sbjct: 762 LTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  +S IR    R + GV  ISL +G ++  +  ++  DA+  E     +         
Sbjct: 822 VRTRVSEIRELG-RATQGVTLISLDEGAKLGGLQRIVENDANEVEGEATDEEAPGGNEAA 880

Query: 766 SGDTEE 771
           +  T E
Sbjct: 881 AEGTGE 886


>gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
 gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
          Length = 880

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 900

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/893 (51%), Positives = 631/893 (70%), Gaps = 5/893 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGSVDGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQ  +HFLL+D+ ++TVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP 
Sbjct: 122 ARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D CV  IDN ++ LD L++++ GPDFPTG  ILGR+GI++A+ATGRGSIVI+G
Sbjct: 182 HNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTILGRSGIRSAFATGRGSIVIQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+E++I  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L++ A+AD ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNRPVLMSLKEIIVAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++I+R + +PE A ++L+ + W  S   + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+QT+AIL+++L RLTGL RD +  ELNS+   +KE +  L 
Sbjct: 422 GLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  V++    PR+T I E   D+E ED I +EDMVVTV+  GY+KRV 
Sbjct: 482 SEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T LF+ +THTS+LFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L  GE IT IMP P +     N  +VFAT HGN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLADGETITNIMPLPSESDESQN--IVFATAHGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI LAK 
Sbjct: 660 KIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A +RL +     I S       +  I  +   +
Sbjct: 720 DSVISMTILNGIGVTTETKELYLKVPLA-KRLETAVNNSIDSKLEKVLNDLGIDNKLFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+FILT++E GFGKRTS+Y++R++NR G  I  T++   N  G +VA FPV  +D 
Sbjct: 779 LAANEEFILTITENGFGKRTSAYEYRVTNRGG--IGITNILTTNRNGNVVASFPVEQDDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I+L++DKG LIR+ VN IRIA R+T+GV +F T   E+VVS  +I +    +E
Sbjct: 837 IMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESREKVVSAAKIEDPGSTEE 889



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 93/271 (34%), Gaps = 50/271 (18%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           M           +V  +  G ++R  L+ +      GK    + + + D +  + + +  
Sbjct: 623 MPLPSESDESQNIVFATAHGNIRRNSLADFHYIPSNGK--IAIKLDEGDKLVSVKVCNET 680

Query: 587 TSVLFFSSLGFVYKEKVWRLPI-GSPQARGK----------------------------- 616
             VL  + LG   +  V  +    S  + G                              
Sbjct: 681 DHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVTTETKEL 740

Query: 617 ----ALINILSLNQG-------ERITTIMPFPED---ESSWNNLYVVFATKHGNVRRNKL 662
                L   L            E++   +        + + N  +++  T++G  +R   
Sbjct: 741 YLKVPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFLKLAANEEFILTITENGFGKRTSA 800

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   NR G      +  +    +++     Q+++I+L T  G+ +R  ++ IR+ AGR
Sbjct: 801 YEYRVTNRGGIGITNILTTNRNGNVVASFPVEQDDNIMLITDKGKLIRISVNGIRI-AGR 859

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++ GV        ++V+S A +    +  + 
Sbjct: 860 STQGVTLFKTESREKVVSAAKIEDPGSTEEN 890


>gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069]
 gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069]
          Length = 879

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/896 (44%), Positives = 557/896 (62%), Gaps = 68/896 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G ++NK 
Sbjct: 3   ELAKEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF  NYDGS  EP VL  R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A+IDNPDI +  LME I+GPDFPT A+I GR GI +AY TGRG I +
Sbjct: 183 PPHNLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAAIINGRAGIIDAYHTGRGKIYL 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E      ++ IVVTE+PYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R
Sbjct: 243 RSRSHVETDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL++G   +V+LN LY  + +Q++F +NMVAL+  +P  F L   + AFV  R EVV
Sbjct: 303 MVIELRKGEVPEVVLNNLYAQSQMQNVFGINMVALDNNQPRLFNLKDAIDAFVTHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR++AHVL GLAIA+AN+D ++ +I+ SP P+ A+  LM R W    +  
Sbjct: 363 TRRTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVST 422

Query: 430 LIDLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++          ++ +   G     Y LS+ Q +AIL+LRL +LTGL  D I  E   L 
Sbjct: 423 MLARAGTEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+E L IL S  RLL +I++EL  V++     RR+ I++  LD+   D I  ED+VVT
Sbjct: 483 GLIEELLRILMSTERLLEVIREELEEVRENFGDERRSEILDSKLDLTIADLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y+AQRRGG+G+S   M+DEDF+  L + STH ++L FSS G VY  
Sbjct: 543 LSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP     +RGK ++N+L L  GERI  I+P  E      + +V  AT +G V++  
Sbjct: 603 KVFELPNAGRGSRGKPIVNVLPLENGERINAILPIRE---FSEDKFVFMATANGTVKKTS 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F +   +G IA+ +   DE++ V      N I++ +  G+ +RF  + +R    R +
Sbjct: 660 LEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGMG-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L +G +VI M +                                         
Sbjct: 719 RGVRGMKLPEGAKVIQMIVA---------------------------------------- 738

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++  +LT +E G+GKRT+  D  +  R G+G+ +  +S+ N  GA+
Sbjct: 739 -------------EEDGSVLTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERN--GAV 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  PV D D+++L+S  GTLIR  V++IRI  R T+GV +      E +V ++RI
Sbjct: 784 VSAVPVIDGDEVMLISKGGTLIRTGVDDIRIMGRNTQGVRLIKLDDGETLVGLQRI 839



 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 103/263 (39%), Gaps = 15/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+  L  +   R    G   + + D+D +  + 
Sbjct: 629 ERINAILPIREFSEDKFVFMATANGTVKKTSLEQFSRPRS--NGIIALTIADDDELIGVV 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
                  ++ FS  G V +     +      ARG   +  + L +G ++  ++   ED S
Sbjct: 687 ETDGSNHIMMFSDAGKVIRFDEANVRGMGRTARG---VRGMKLPEGAKVIQMIVAEEDGS 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 V+ AT++G  +R  + D     R G+  + +   +    ++S       ++++L
Sbjct: 744 ------VLTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERNGAVVSAVPVIDGDEVML 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +K G  +R  +  IR+   RN+ GVR I L  G+ ++ +  ++  + D D+     +  
Sbjct: 798 ISKGGTLIRTGVDDIRIMG-RNTQGVRLIKLDDGETLVGLQRIVEIEDDEDDEDELEESE 856

Query: 759 SAQRRLISGDTEEITSLKNDSSV 781
             +        +E  S +     
Sbjct: 857 VVETSNNEESLDETDSQEAGDDE 879


>gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
          Length = 890

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/918 (42%), Positives = 557/918 (60%), Gaps = 67/918 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  K    +S+ +EM+ SYL YA++VI+GRA+PD RDG KPVHRR+LF M ++  +WN+
Sbjct: 2   TEFAKETLPISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGDP AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH  L D+ K+TVDF PNYDGS +EP+VL  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLAKIAHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ V+ NP   +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHVLKNPGASIDELMEIIPAPDFPTAGIIYGMQGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK ++LE+IAELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL G +P+   L  ++  F+  R EV
Sbjct: 302 RVVIELKRGELPEVVLNNLYKQTQLQDTFGMNMVALVGGQPKLCNLKDLIVVFLDHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + + +DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRSRADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +  EI+  LDIL+   R+  I+ +EL  +K E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMAEIENLLDILARPERVAAIVGEELAGIKQEFGQTKLGARRSVVEHNAQDLA 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED VVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++P   E  S  ++ Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSSFPSDHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT+ G V++  L +F    ++G IA+ LD+ D ++        +D++L +  G+ VR
Sbjct: 662 VFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG+ L  G  VI+M +      +                    
Sbjct: 722 FDENDVRPMG-RNARGVRGMMLDDGQSVIAMLVAQDETQNDVNGEA-------------- 766

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           +LT +E G+GKRT   ++    R  KG+
Sbjct: 767 ----------------------------ARTSVLTATENGYGKRTPIAEYTRHGRGTKGM 798

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +   
Sbjct: 799 IAIQQSERN--GKVVAATLVHTDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIALDD 856

Query: 888 DERVVSVERIRESEIVDE 905
             ++  ++RI E++   E
Sbjct: 857 GTQLSGLQRIVENDANGE 874


>gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
 gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
          Length = 888

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/904 (45%), Positives = 557/904 (61%), Gaps = 68/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V + DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G  WNKKYVK
Sbjct: 35  KEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYVK 94

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I G+VMGKYHPHG++AIYD L RMAQ +SLR  L++GQGNFGS+DGDPPAA RYTE 
Sbjct: 95  SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPPAAYRYTEA 154

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL D+ K+TVDF PNYDGS QEP VL  R PN+LVNG  GIAVGMATN+P H
Sbjct: 155 RMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVGMATNVPPH 214

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE +D C+ ++D+PD D  ALM  + GPDFPTGA+I G  GI+ AY TGRG I IR  
Sbjct: 215 NLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALINGAKGIREAYETGRGRIYIRAK 274

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +HIE   S  ++ IVV E+PYQVNKA +L KIAELV+EK+I  I  LRDESD+ G R+VI
Sbjct: 275 THIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESDKDGIRMVI 334

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG  A+VILN L++ T LQ +F +NM+AL G +P   +L   L+ F+A R EVV RR
Sbjct: 335 ELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQPRLLSLKEALQVFIAHRREVVTRR 394

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + Y L KAR+RAH+L GLAIA+AN+DE++ +IR S  P  A+  L+ R W    + D++ 
Sbjct: 395 SIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTPGQVVDMLA 454

Query: 433 LIDDSSYTIGSDG--------TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +      G          +LS  Q +AIL+LRL RLTGL +D I  E   +  EI
Sbjct: 455 RAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQEFQEIIHEI 514

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +  L+IL    RLL +IK+ELL +K++ +  RRT+I++  L++  ED I  ED V+T+SH
Sbjct: 515 EALLEILQVPERLLAVIKEELLDIKNQFNDVRRTQILDTHLNLSLEDLIAEEDRVITLSH 574

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PL+ Y AQRRGGKG+S   ++DEDFV  L + +TH ++L F++ G VY  KV+
Sbjct: 575 EGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCFTNRGKVYWLKVY 634

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP     A+GK ++N+L    GER+  ++   +      + Y++FATK G V++  LS+
Sbjct: 635 ELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDY---PEDQYLIFATKSGTVKKTPLSE 691

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +    G IA+ L   DE++ V       DI+L +  G+ VRF  +++R    R+S GV
Sbjct: 692 YSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSMG-RDSTGV 750

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG++L  G +VI++ +V                                           
Sbjct: 751 RGMNLDDGQRVIALCVVEEQGD-------------------------------------- 772

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT++E G+GKRT   D+    R  KG+ +   S  N  G  V  
Sbjct: 773 ---------------ILTITENGYGKRTPVADYPQKGRGTKGVISIACSARN--GQAVCA 815

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +++ I+LV+D GTL+R  V EI  + R T+GV +  T   E++++V +I       
Sbjct: 816 VQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRTTDSEKLIAVAKIVAESEDS 875

Query: 905 EAES 908
           E + 
Sbjct: 876 EGDE 879



 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 17/240 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E L  +        +  ++  +  G VK+ PLS Y   R    G   + +R++D + D+ 
Sbjct: 658 ERLNAVLTTRDYPEDQYLIFATKSGTVKKTPLSEYSRPRS--IGIIAINLREDDELVDVA 715

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
                  ++ FS  G   +     +      + G   +  ++L+ G+R+  +    E   
Sbjct: 716 RTDGSRDIMLFSDAGKAVRFNENSVRSMGRDSTG---VRGMNLDDGQRVIALCVVEEQGD 772

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDIL 697
                 ++  T++G  +R  ++D+ Q  R  K    IA    +   + +V+   ++  I+
Sbjct: 773 ------ILTITENGYGKRTPVADYPQKGRGTKGVISIACSARNGQAVCAVQVL-EDEHIM 825

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L T  G  VR  ++ I   +GRN+ GVR I     +++I++A ++    D +      + 
Sbjct: 826 LVTDNGTLVRTRVAEIST-SGRNTQGVRLIRTTDSEKLIAVAKIVAESEDSEGDEGMTEE 884


>gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
 gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
          Length = 899

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/918 (44%), Positives = 562/918 (61%), Gaps = 91/918 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + +H LL DL K+TVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A+I+NPDI +D L++ I GPDFPT A+I G+ GI+ AY TGRG + IR  
Sbjct: 186 NLNEVINGCLALINNPDITIDELIDYIPGPDFPTAAIISGKKGIEQAYKTGRGKVYIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     +E I+V E+PYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E
Sbjct: 246 AEVETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  TS+Q++F +NMVAL+  +P+   L  +L AFV  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQPKLLNLKEMLHAFVVHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L+ R W+   ++ +++ 
Sbjct: 366 VFDLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQSMLER 425

Query: 434 IDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             +          +     DG  +LS  Q +AILELRL RLTGL  + I  E   L   I
Sbjct: 426 TGESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQELLDLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILSS  RLL +I+ EL   K++    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 AELLHILSSPERLLEVIRDELALAKEQYGDERRTVITAAAHDISLEDLINEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 546 EGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK +IN+L L   ERIT I+P  E E    N Y+  AT  G V++  L+ 
Sbjct: 606 QLPLASRAARGKPIINLLPLEANERITAILPVREYEE---NKYIFMATAFGTVKKTPLTA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-------- 716
           + +   SG IA+ L+  D ++ V+     N+I+L +  G+ VRF  S             
Sbjct: 663 YSRQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDENGNLV 722

Query: 717 ----------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                            GR + GVRGI + +G +V+S+                      
Sbjct: 723 LDENGQPEIKFKGVRPMGRTATGVRGIKMGEGQRVVSLI--------------------- 761

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                           +   +  ILTV+E G+GKRT+  D+   
Sbjct: 762 --------------------------------VPKNDGSILTVTENGYGKRTNLEDYPSK 789

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R+ +G+ +  VS+ N  G +V    V +ND+I+L+S++GTL+R  V E+    R T+GV
Sbjct: 790 SRATQGVVSIKVSERN--GKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVGRNTQGV 847

Query: 881 VIFSTAKDERVVSVERIR 898
           ++  T  +E VV ++RI 
Sbjct: 848 ILIRTIDEELVVGLQRID 865



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 98/283 (34%), Gaps = 40/283 (14%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+ PL+ Y  QR    G   V + + D +  + 
Sbjct: 629 ERITAILPVREYEENKYIFMATAFGTVKKTPLTAYSRQRSS--GIIAVNLNEGDSLIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPI-------------------------GSPQARGK 616
           I      ++ FS  G V + K                                   A G 
Sbjct: 687 ITDGTNEIMLFSDAGKVVRFKESEESEVLDENGNLVLDENGQPEIKFKGVRPMGRTATG- 745

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKI 674
             +  + + +G+R+ +++         N+  ++  T++G  +R  L D+   +R+  G +
Sbjct: 746 --VRGIKMGEGQRVVSLIV------PKNDGSILTVTENGYGKRTNLEDYPSKSRATQGVV 797

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           ++K+     +++      + ++I+L +  G  VR  +  +     RN+ GV  I     +
Sbjct: 798 SIKVSERNGKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVG-RNTQGVILIRTIDEE 856

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            V+ +  +   +                      +  EI + +
Sbjct: 857 LVVGLQRIDEIEEAEYFEEVVATSDDTPASETPDNEAEIPTAE 899


>gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3]
 gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3]
          Length = 904

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/907 (45%), Positives = 567/907 (62%), Gaps = 35/907 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIIAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSM 422

Query: 431 I-------DLIDDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          DD    +G  +G   L+E+Q   ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL+SVK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELISVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     E DILL    G+ VRF    +R    R + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A    DE               + + + +    +D+SV+
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGSEDE-----NEDDNGVEETAANGDAVIDGADDASVQ 773

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 774 ----------------YILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAEST 909
            DE E  
Sbjct: 876 EDEDEVA 882



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 109/281 (38%), Gaps = 35/281 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PL  +    R  +G+  + + + D +  + 
Sbjct: 628 ERVQAVLPVREYADGQFVFFATKNGTVKKTPLGEF--AFRLARGKIAINLDEGDALVGVG 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----- 636
           +      +L F+S G   +    ++      A G   +  + +  GE + +++       
Sbjct: 686 LTDGERDILLFASNGKTVRFGEDKVRSMGRTATG---VRGIKMPAGEEVVSLIVAESAGG 742

Query: 637 PEDESSWNN---------------------LYVVFATKHGNVRRNKLSDFIQINRS--GK 673
            EDE+  +N                      Y++ AT++G  +R  L D+ +  R   G 
Sbjct: 743 SEDENEDDNGVEETAANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           I ++      ++++       +++LL +  G  VR   S I    GRN+ GV  I L+K 
Sbjct: 803 IGIQTTERNGKLVAAVLMGSGDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKD 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +++ ++  +  +  + ++ +      +      +  +E+  
Sbjct: 862 EKLQAVERMDASIDEDEDEVAVAAPAATDGAPAAASSEDAA 902



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 12/226 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+S  R             +  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAST-KEEDFIEQLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    +E     QF+   +
Sbjct: 591 TFTSSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE-YADGQFVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K+T   +F    R  +G  A ++ + +   ALV V   +    I+L +  G  +R
Sbjct: 650 KNGTVKKTPLGEFAF--RLARGKIAINLDEGD---ALVGVGLTDGERDILLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              +++R   R   GV        E VVS+  + ES    E E+ +
Sbjct: 705 FGEDKVRSMGRTATGVRGIKMPAGEEVVSL-IVAESAGGSEDENED 749


>gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846]
          Length = 882

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 580/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRAGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
 gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
          Length = 884

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus
           influenzae F3031]
 gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3031]
          Length = 882

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
 gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
          Length = 904

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/907 (44%), Positives = 567/907 (62%), Gaps = 35/907 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   L+E+Q   ILE+RL RLTGL +D + +E   L  
Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL+SVK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVSVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  +     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYA---DGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     + DILL    G+ VRF    +R    R + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A    DE         +     + + + +    +D+SV+
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGIEDE-----NEDDSGVEEAAANGDAVIEGADDASVQ 773

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 774 ----------------YILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +  +D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSSDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAEST 909
            DE E  
Sbjct: 876 EDEDEVA 882



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 104/282 (36%), Gaps = 38/282 (13%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PL  +    R  +G+  + + + D +  + 
Sbjct: 628 ERVQAVLPVRDYADGQFVFFATKNGTVKKTPLGEF--AFRLARGKIAINLDEGDALVGVG 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---- 637
           +      +L F+S G   +    ++      A G   +  + +  GE + +++       
Sbjct: 686 LTDGQRDILLFASNGKTVRFGEDKVRSMGRTATG---VRGIKMPAGEEVVSLIVAESAGG 742

Query: 638 -EDESSWNN---------------------LYVVFATKHGNVRRNKLSDFIQINRS--GK 673
            EDE+  ++                      Y++ AT++G  +R  L D+ +  R   G 
Sbjct: 743 IEDENEDDSGVEEAAANGDAVIEGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           I ++      ++++       +++LL +  G  VR   S I    GRN+ GV  I L+K 
Sbjct: 803 IGIQTTERNGKLVAAVLMGSSDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKD 861

Query: 733 DQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           ++   V  M   +  D D            A     S D  +
Sbjct: 862 EKLQAVERMDASIDEDEDEVAAAAPATTDGAPAAASSEDAAQ 903



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 79/231 (34%), Gaps = 16/231 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+S  R             +  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAAT-KEEDFIEQLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    ++     QF+   +
Sbjct: 591 TFTSSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRD-YADGQFVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K+T   +F    R  +G  A ++ + +   ALV V   +    I+L +  G  +R
Sbjct: 650 KNGTVKKTPLGEFAF--RLARGKIAINLDEGD---ALVGVGLTDGQRDILLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-----ESEIVDEAESTE 910
              +++R   R   GV        E VVS+         E E  D++   E
Sbjct: 705 FGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGIEDENEDDSGVEE 755


>gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
 gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
          Length = 882

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW    +  ++ D+    D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVRGI LA           L  D   DE                 + E+I+  
Sbjct: 711 MG-RLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi]
          Length = 902

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/896 (51%), Positives = 635/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + DS+  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 424 VSDST-GVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 781

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 55/272 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTT 700
                VV  T +G V+R KLS++    R GK  +A  +   D    +        +L  +
Sbjct: 523 PKEEMVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFS 582

Query: 701 KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +G+  +  +  + +   + R    V    L+ G+ + S+  +   D             
Sbjct: 583 NVGKVYKLKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCD------------- 629

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E+ +    ++  +  G  +R +  DF+
Sbjct: 630 --------------------------------DEVGIANLDVVFATASGNIRRNALSDFQ 657

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRAT 877
               SGK   A  ++  ++   L++       D ++L S  G  IR  V+ +R    R +
Sbjct: 658 YVPSSGK--IAMVLTPGDQ---LISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTS 712

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            GV     +  ++V+S+  +   E   E + +
Sbjct: 713 DGVRAIRLSAGDQVISMSVLHGIEASSELKES 744


>gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12]
 gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12]
          Length = 905

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/924 (43%), Positives = 562/924 (60%), Gaps = 86/924 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R  
Sbjct: 186 NMTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + ++     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+VIE
Sbjct: 246 AEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +++ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMIECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++ 
Sbjct: 366 VFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL++ Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RLL +IK+EL  + +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG+S   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ ++N+L L++GE IT I+P  E     ++ Y++ AT HG V++  L  +
Sbjct: 606 LPLASRQARGRPIVNLLPLSEGEHITAILPVREYA---DDKYIIMATSHGTVKKTALKAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI----SAIRVF----- 716
                +G IA+ L   DE++ V+    +NDI+L +  G+ VRF      S   +      
Sbjct: 663 SNPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRDSETGLVKLDPE 722

Query: 717 ----------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                      GR + GVRGI L  G +V+S+ +                          
Sbjct: 723 TNEELVALRPMGRTATGVRGIRLEDGQKVVSLIV-------------------------- 756

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                        +   ILTV+E G+GKRTS  ++   +R+ KG
Sbjct: 757 ---------------------------PKENGAILTVTENGYGKRTSLEEYPAKSRATKG 789

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + +  VS+ N  GA+V    V +ND+I+L+SD+GTL+R P   +    R T+GV I    
Sbjct: 790 VVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRIV 847

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
           + E+VV ++RI E    DE E  E
Sbjct: 848 EGEKVVGLQRIDEI-HEDEVELDE 870


>gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 889

 Score =  826 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/923 (43%), Positives = 565/923 (61%), Gaps = 78/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS QEP+V+  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPTG +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMEIIPAPDFPTGGIIYGINGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+LKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F++ R EV
Sbjct: 302 RLVIDLKRGEVPEVVLNNLYKQTQLQDTFGINMVALINGQPKLCNLKDLIQVFISHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + IIR +P P  A+ ELM R+W++S ++
Sbjct: 362 VTRRTVFTLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    + S+ +GSDG   LSE QT+ IL++RL RLTGL +D 
Sbjct: 422 EMLTRAHADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +  EI + LDIL+   R+  II QEL ++K E        RR+ I     D+ 
Sbjct: 482 IVAEYKEVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQTKLGARRSHIEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS  G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++    E  S   + Y
Sbjct: 602 ILCFSDRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRSFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L DF    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG++L +G  VI+M +                           
Sbjct: 722 FDENDVRPMG-RNARGVRGMNLEEGQGVIAMLVAEDG----------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                        EQ +LT ++ GFGKRTS  ++    R  KG+
Sbjct: 758 -----------------------------EQSVLTATQMGFGKRTSISEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D+G L+R  V+EIR   RAT+GV +    +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDRGVLVRTRVSEIREMGRATQGVTLIGLDE 846

Query: 888 DERVVSVERIRESEIV-DEAEST 909
             ++  ++RI E++   D+ E T
Sbjct: 847 GSQLSGLQRIVENDATLDDTEKT 869


>gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
 gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
          Length = 908

 Score =  826 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/896 (51%), Positives = 634/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 10  GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 70  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 190 LGEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  + DI+++I+L
Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIEL 429

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + DS+  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 430 VSDST-GVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 489 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 548

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 549 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 608

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 609 RGRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIRRNALSDFQYVPSS 668

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 669 GKIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 728

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 729 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 787

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 788 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 845

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 846 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 901



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 55/272 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTT 700
                VV  T +G V+R KLS++    R GK  +A  +   D    +        +L  +
Sbjct: 529 PKEEMVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFS 588

Query: 701 KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +G+  +  +  + +   + R    V    L+ G+ + S+  +   D             
Sbjct: 589 NVGKVYKLKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCD------------- 635

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E+ +    ++  +  G  +R +  DF+
Sbjct: 636 --------------------------------DEIGIANLDVVFATASGNIRRNALSDFQ 663

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRAT 877
               SGK   A  ++  ++   L++       D ++L S  G  IR  V+ +R    R +
Sbjct: 664 YVPSSGK--IAMVLTPGDQ---LISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTS 718

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            GV     +  ++V+S+  +   E   E + +
Sbjct: 719 DGVRAIRLSAGDQVISMSVLHGIEASSELKES 750


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/915 (42%), Positives = 554/915 (60%), Gaps = 77/915 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 19  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 78

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 79  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 138

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 139 YTEIRLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATN 198

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 199 IPPHNLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVV 258

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 259 MRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 318

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 319 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREV 378

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  ++
Sbjct: 379 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 438

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++    +                  + +   G   LS+ Q + IL++RL RLTGL +D 
Sbjct: 439 EMLTRTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDK 498

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I+  LDIL+  +R+  II +EL +++ E        RR+ I     D+ 
Sbjct: 499 IVAEYKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLS 558

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 559 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 618

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   E  S   + Y
Sbjct: 619 ILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRY 678

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    ++G IA+ LD  D ++       E+D++L +  G+ VR
Sbjct: 679 VFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVR 738

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GV+G+ L  G  VI+M +                           
Sbjct: 739 FDENDVRPMG-RNARGVKGMQLEDGQSVIAMLVAEDE----------------------- 774

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 775 -----------------------------NQSVLTATENGYGKRTSITEYTRHGRGTKGM 805

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 806 IAIQQSERN--GRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 863

Query: 888 DERVVSVERIRESEI 902
             ++  ++RI E++ 
Sbjct: 864 GAKLSGLQRIVENDA 878



 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 14/227 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +      +  V   + +G VK+  L  +   R+   G   V + + D++    +      
Sbjct: 669 EMRSFPADRYVFMATSMGTVKKTALDEFSNPRKA--GIIAVGLDEGDYLIGAALTDGEHD 726

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ FS  G   +     +      ARG   +  + L  G+ +  ++   EDE    N  V
Sbjct: 727 VMLFSDSGKAVRFDENDVRPMGRNARG---VKGMQLEDGQSVIAML-VAEDE----NQSV 778

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  ++++ +  R  K  + +        +++      +++I+L T  G  
Sbjct: 779 LTATENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVL 838

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           VR  +S IR    R + GV  ISL +G ++  +  ++  DA+  E  
Sbjct: 839 VRTRVSEIRELG-RATQGVTLISLDEGAKLSGLQRIVENDANTAEAD 884



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 101/265 (38%), Gaps = 13/265 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G ++   LS++    R   GK A      D I  +      + IL  +  G+ 
Sbjct: 569 VVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGRL 628

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQ 761
               +  +     RNS G   V    L +G+++ + + +     +   +R  +M      
Sbjct: 629 YWLKVWEV-PAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVFMATSMGT 687

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
            +  + D           +V  +  +      L   E  ++  S+ G   R    D R  
Sbjct: 688 VKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVRFDENDVRPM 747

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKG 879
            R+ +G++   +    +  +++A+    D +Q ++  ++ G   R  + E     R TKG
Sbjct: 748 GRNARGVKGMQL---EDGQSVIAMLVAEDENQSVLTATENGYGKRTSITEYTRHGRGTKG 804

Query: 880 VVIFSTAK-DERVVSVERIRESEIV 903
           ++    ++ + RVV+   +   + +
Sbjct: 805 MIAIQQSERNGRVVAATLVHADDEI 829


>gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A
 gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida]
          Length = 922

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/913 (42%), Positives = 566/913 (61%), Gaps = 29/913 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   REITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMA NIP H
Sbjct: 126 RMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V+GC+A+I+N ++ +D LM  I GPDFPTGA+I GR GI  AY TGRGS+ +R  
Sbjct: 186 NLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAK 245

Query: 254 SHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + +E          I+V E+PYQVNKA ++EKIAELV+EK++  I+ LRDESD+   R+V
Sbjct: 246 AEVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KRG S +++LN LY++T LQ+ F +NMVAL+  +P+   L  IL AF+  R EVV R
Sbjct: 306 IEIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+ +L+ R W   ++  ++
Sbjct: 366 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 425

Query: 432 DLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +   D +             +G  +L+E Q +AIL+LRL +LTGL    I  E  SL   
Sbjct: 426 EKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I+ ELL+V+++    R   I     ++  ED I  ED+VVT+S
Sbjct: 486 IAELLFILASPERLMEVIRDELLAVREQYGDERPPEISASSAEINIEDLITPEDVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  P++ Y AQRRGG+G+S   +++E+FV  L + +TH ++L FS+ G VY  KV
Sbjct: 546 HQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTRGKVYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  ARG+ +IN+L L +GERIT I+P  E     ++ YV FAT  G V++  LS
Sbjct: 606 YQLPEASRGARGRPIINLLPLEEGERITAILPVKEYA---DDKYVFFATADGTVKKTSLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   +           
Sbjct: 663 AFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPMQPM---- 718

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +       GD    +      D   +             + +         ++    + G
Sbjct: 719 LMSSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNG 778

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              +     +   E  ILT +E G+GK T+  ++   +R  +G+R+  V +  +    V+
Sbjct: 779 --DKVVSLIVPRGEGAILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDEDGK----VS 832

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SE 901
           +  V+D DQI+L+++ GTL+R  V+E+ I  R T GV +  T +DE VV ++RI E   E
Sbjct: 833 IDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESYEE 892

Query: 902 IVD----EAESTE 910
             D    + E +E
Sbjct: 893 ENDVMAIDGEVSE 905


>gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354]
          Length = 941

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/926 (47%), Positives = 613/926 (66%), Gaps = 36/926 (3%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+ +       E     + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF   
Sbjct: 5   TDTLTPPSPMGEYD--RIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQ 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G    + Y K A+I G+VMG YHPHG++AIYDALARM Q WS+R+ LI+GQGNFGS+D
Sbjct: 63  EGGFVAGRPYRKSAKIVGDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGSMD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DPPA+ RYTE RL+K A+ LLDDL KDTVDF  NYDGS +EP VL A +PN+LVNG GG
Sbjct: 123 PDPPASMRYTEARLEKVANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGAGG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+DGC+A I NP I  + L+E I GPDFPT  +ILG++G ++AY
Sbjct: 183 IAVGMATNIPPHNLGEVIDGCLAFIANPAITSEELIEYIPGPDFPTAPLILGQSGARSAY 242

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI++R    +E    DR+ IV+T IPYQV K  ++EKIAE  ++KRI  I+D+RD
Sbjct: 243 LTGRGSIMMRARHEVETGRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDIRD 302

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES R+G RVV++LKR AS +V+LNQL+RY+  Q+ F  NM+A+ G +PE   L  I++AF
Sbjct: 303 ESSREGVRVVVDLKRDASPEVVLNQLWRYSPAQASFPANMLAIRGGRPEVLALRDIIQAF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FRE+V+ RRTK+ LNKARDRAH+L+GL +AV+N+DEVV IIR + NP  AR +L+++ 
Sbjct: 363 ISFREQVITRRTKFELNKARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLRKE 422

Query: 422 WNASDIKDLIDLIDDSSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           W   DI   I L++    +     GT  LSE Q +AIL+LRL RLT LGRD+I +EL  L
Sbjct: 423 WPIGDIAQYIALVEAIEPSSDEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELKEL 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+  L IL+ R +L  ++++EL +++D+  TPR + I      ++DED I +EDMVV
Sbjct: 483 ATKIEYYLSILADRRKLYQVMREELQAIRDQYATPRMSEIAPAWDGVDDEDLIEQEDMVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR PL  +RAQ RGGKGRS +  +DED V ++F+ STH  VLFF++ G VY+
Sbjct: 543 TVTHGGYIKRTPLHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRVYR 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVW+LP GSP  +G+ ++N+L L + ER+T ++P P+DE+ W+ L +VFAT+ G VRRN
Sbjct: 603 LKVWKLPEGSPTTKGRPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNIVFATEQGMVRRN 662

Query: 661 KLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F +I  +GK AM    DS D ++ V    ++ +I L +  G+ +RF  +  R    
Sbjct: 663 SMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFAATDARETKS 722

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R  +GVRG+ L +GD+V+S+A++     D + R  Y++                 ++  +
Sbjct: 723 RTGIGVRGMKLKEGDKVVSLAVLHPLSHDMETREAYLR----------------GAVWKN 766

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKINE 837
           +  +  +  E  QE++  E+FILT++  G+GK +S+Y++R   R G+GI    + S    
Sbjct: 767 NDTDHTLDTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKR 826

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFS 884
            G +VA FPV    Q++LV+D+  LIR+P++                I  R + GV +F 
Sbjct: 827 NGPVVASFPVRHGMQLMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKVFD 886

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
            AK E++V   RI E +   E E+ E
Sbjct: 887 VAKGEQIVGAARIDE-DADPENEAEE 911



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 58/317 (18%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T ++    D  +   +     +V  +  G V+R  +  +      GK   G V   
Sbjct: 629 DERVTNVLPLPQDEAEWSKLN----IVFATEQGMVRRNSMDAFTRIPSNGKYAMGFVEDS 684

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG-SPQARGKALINILSLNQGERITT 632
            D +  + +++    +   S  G   +          S    G   +  + L +G+++ +
Sbjct: 685 GDRLIGVRLLNEDQEIFLASDAGKAIRFAATDARETKSRTGIG---VRGMKLKEGDKVVS 741

Query: 633 IMPFP-------------------------------EDESSWNNLYVVFATKHGNVRRNK 661
           +                                     E   N  +++  T +G  + + 
Sbjct: 742 LAVLHPLSHDMETREAYLRGAVWKNNDTDHTLDTELAQEMEENEEFILTLTANGYGKISS 801

Query: 662 LSDFIQINRSGKIAMKLDSRDE------ILSVETCTQENDILLTTKLGQCVRFPIS---- 711
             ++  I R G+    +    +      +++         ++L T   + +R PI     
Sbjct: 802 AYEYRTIGRGGQGITNIGEPSDSKRNGPVVASFPVRHGMQLMLVTDQAKLIRLPIDFRHL 861

Query: 712 --------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
                         GR S GV+   +AKG+Q++  A +   DAD +             R
Sbjct: 862 IPDGFVNHKGWSIYGRGSSGVKVFDVAKGEQIVGAARI-DEDADPENEAEEAIMDERMAR 920

Query: 764 LISGDTEEITSLKNDSS 780
                +   T  ++D +
Sbjct: 921 EDQTTSPHTTLDRDDPT 937


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/895 (44%), Positives = 550/895 (61%), Gaps = 67/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G   NK Y K
Sbjct: 6   KEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+G +A+ID P++D+DALM+ I GPDFPT  +I G  GI+ AY TGRG + IR  
Sbjct: 186 NLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAGIINGVGGIQLAYRTGRGRVRIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+ IE
Sbjct: 246 ADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG SA+V+LN LY+ T L+S+F +NMVAL   +P+   L  IL+AF+  R EVV RRT
Sbjct: 306 VKRGESAEVVLNNLYQQTQLESVFGINMVALVDGRPQLVNLKQILEAFLRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID- 432
            + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ A+  ++ R+W    +  L+  
Sbjct: 366 IFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAA 425

Query: 433 ------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                   DD    +G  +G   L+EVQ + ILE+RL RLTGL ++ +  E   L   I+
Sbjct: 426 TGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIR 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             ++IL     LL +I+ EL  +K E    RR+ I     D++  D I  ED+VVT+SH 
Sbjct: 486 ALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR P+S YRAQ+RGG+GRS    +DEDF+  L++V+TH ++L F+S G V+   V +
Sbjct: 546 GYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFWLPVHQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP     ARG+ +IN + L +GE++  ++P  E    +   +V FAT++G V++  L++F
Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGF---FVFFATRNGTVKKTPLTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 GKIA+ LD  D ++ V       D++L    G+ VRF  S +R    R + GVR
Sbjct: 663 AFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAMG-RTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+G+                                                    
Sbjct: 722 GIRLAEGE---------------------------------------------------- 729

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E     +   E  ILT SE+G+GKRT   ++    R  +G+ A   S+ N  G LV   
Sbjct: 730 -EVVSLVVPDGEGDILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERN--GRLVGAI 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +++  +++L+SD GTL+R   +EI    R T+GV +    + E + +VER+  S
Sbjct: 787 QLSEQHEVLLISDGGTLVRTRASEISQVGRNTQGVTLIRLGEGESLQAVERVDAS 841



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 18/256 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PL+ +    R  +G+  + + D D +  + 
Sbjct: 628 EQVQAVLPVREYAEGFFVFFATRNGTVKKTPLTEF--AFRLARGKIAINLDDGDNLVGVA 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ F+S G   +     +      A G   +  + L +GE + + +  P+ E 
Sbjct: 686 LTDGGRDVMLFASNGKAVRFDESEVRAMGRTATG---VRGIRLAEGEEVVS-LVVPDGEG 741

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++ A++ G  +R  LS++ +  R   G IA++       ++     ++++++LL
Sbjct: 742 D-----ILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLL 796

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR   S I     RN+ GV  I L +G+   S+  V   DA  DE        
Sbjct: 797 ISDGGTLVRTRASEISQVG-RNTQGVTLIRLGEGE---SLQAVERVDASLDEAAEEGVAA 852

Query: 759 SAQRRLISGDTEEITS 774
            A  +   G      S
Sbjct: 853 GAPEQPSDGAEATPAS 868


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/906 (44%), Positives = 565/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D+VIS+ I                          GD E +T  +N       
Sbjct: 722 RGINLNGDDRVISLIIPR------------------------GDGEILTVTENGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +                              ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 758 V-----------------------------EEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846

Query: 905 EAESTE 910
           E    E
Sbjct: 847 EILDGE 852



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 104/272 (38%), Gaps = 15/272 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  L+ +   R    G   V + + D +  + 
Sbjct: 629 ERITAILPVREYEEGRHIFMATASGTVKKTALTEFSRPRSA--GIIAVNLNEGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS+LG V +    ++      A G   +  ++LN  +R+ +++    D  
Sbjct: 687 LTDGSNEVMLFSALGKVVRFPESQVRSMGRTATG---VRGINLNGDDRVISLIIPRGDGE 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T++G  +R  + ++   +R+  G I++K+     +++        + I++
Sbjct: 744 ------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMM 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V   + D +         
Sbjct: 798 ITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDG 856

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                  +           D + +G+  +   
Sbjct: 857 EEGSEEKTALNTPEDEDAADEAKDGDDEDNNA 888


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 552/911 (60%), Gaps = 78/911 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP   +D LME+I  PDFPTG +I G +G++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIYGMSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                  + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 EMLSRADGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II  EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L +GE+IT ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKE---FSEDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R    RN+ GVRG+ L     VI++                         L++GD 
Sbjct: 719 ENDVRPMG-RNARGVRGMMLEDTQTVIAL-------------------------LVAGD- 751

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 752 --------------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + +     
Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDGS 843

Query: 890 RVVSVERIRES 900
            +  V R+ ES
Sbjct: 844 SLSGVRRVVES 854


>gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 899

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/935 (44%), Positives = 575/935 (61%), Gaps = 96/935 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            GI  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   HGILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+I NP++ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLALIQNPELSILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR SP P  A+  L  RSW   ++K ++D
Sbjct: 366 TVFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLD 425

Query: 433 --------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                     D  +  +G  DG  ++SE Q +AIL+LRL +LTGL  + I  E  SL   
Sbjct: 426 KAGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL++  RL+ +I+ EL+ +K +    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLHILATPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT I+P  E      + Y+  AT  G V++  L+
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVREYAE---DKYIFMATAFGTVKKTPLT 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF------- 716
            + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +            
Sbjct: 663 AYSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNP 722

Query: 717 -----------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                             GR + GVRGI + +G +V+S+ +                   
Sbjct: 723 VLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRVVSLIV------------------- 763

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                +  ILTV+E G+GKRT   D+  
Sbjct: 764 ----------------------------------PKTDGAILTVTENGYGKRTLLEDYPA 789

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T+G
Sbjct: 790 KSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQG 847

Query: 880 VVIFSTAKDERVVSVERIRESEIVD----EAESTE 910
           V++  T  +E+VV ++RI E E+ +    + E  E
Sbjct: 848 VILIRTIDEEQVVGLQRIEEIEVTESDLIDIEDVE 882


>gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
 gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
          Length = 867

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIALLVA------------------------------ 747

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 748 ----------------------GSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849


>gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666]
 gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666]
          Length = 880

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/923 (42%), Positives = 564/923 (61%), Gaps = 77/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS QEP+V+  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEI+  PDFPTG +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHMLKNPEASIDELMEIVPAPDFPTGGIIYGINGVKDGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F++ R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIQVFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R W++S ++
Sbjct: 362 VTRRTVFTLRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    + ++ +GSDG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +  EI + LDIL+   R+  II +EL ++K E        RR++I     D+ 
Sbjct: 482 IVAEYKEVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQTKLGARRSQIEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++P   E  S   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRSFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG++L  G  VI+M +                           
Sbjct: 722 FDENDVRPMG-RNARGVRGMTLEDGQGVIAMLVAEDE----------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                        +Q +LT ++ G+GKRTS  ++    R  KG+
Sbjct: 758 -----------------------------QQSVLTATQNGYGKRTSITEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV +    +
Sbjct: 789 IAIQQSERN--GKVVAATLVHVDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIGLDE 846

Query: 888 DERVVSVERIRESEIVDEAESTE 910
             ++  ++RI E++   +    E
Sbjct: 847 GSQLSGLQRIVENDATLDDNDVE 869


>gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
 gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
          Length = 867

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++N D  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNADATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIALLVA------------------------------ 747

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 748 ----------------------GSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849


>gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6]
 gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6]
          Length = 867

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIALLVA------------------------------ 747

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 748 ----------------------GSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849


>gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 902

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/910 (43%), Positives = 562/910 (61%), Gaps = 62/910 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLRKIAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV  C+ V+ NP+  +D L+EII  PDFPT  +I G   ++  Y TGRG +V
Sbjct: 182 IPPHNLDEVVTACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQRVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR H L GLA+A+AN+DE + II+ + NP  A++ELM ++W++S ++
Sbjct: 362 VTRRTIFELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  Y + + G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLDME 528
            NE   +  EI + LD+L+   R+  +I+ EL  V+ E       T RR+ I     ++ 
Sbjct: 482 VNEYKEVMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFIEVNATELF 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +D+VVT+S+ GY+K  PLS YRAQ+RGG+G+     ++ED++  LF+ +TH +
Sbjct: 542 TEDLITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDT 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS  G +Y  KVW +P GS  +RGK ++N+  L +GE+IT I+P    +   +N YV
Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPI---KGYQDNQYV 658

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++ +LSDF    ++G IA+ L+  D ++       ++D++L +  G+ VRF
Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R    R + GVRG++L +G QVI+M +     A+  E      +  A        
Sbjct: 719 DENDVRPMG-RTARGVRGMNLGEGHQVIAMLVAPAEAAEGVEAAVVDANGIAI------- 770

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 771 ----------------------------PSSVLTATENGYGKRTPITEYTRHGRGTKGMI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V+  DQI+L++  G L+R  V+EIR   RAT+GV + +  + 
Sbjct: 803 AIQTSERN--GKVVAAALVSPEDQIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDEG 860

Query: 889 ERVVSVERIR 898
            R+  ++RI 
Sbjct: 861 TRLSGLQRIA 870


>gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8]
 gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8]
          Length = 856

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/898 (44%), Positives = 560/898 (62%), Gaps = 69/898 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQGIINGRAGIVEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE+     RE I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G R
Sbjct: 243 RARHEIEQDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DVI+N L+  T L+++F +NMVAL   +P+   L  +L AFV  R EVV
Sbjct: 303 VVIELRRGENPDVIINNLFAQTQLETVFGINMVALINGEPKTLNLKEMLDAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+   A+ +LM + W   D+  
Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL    RL+ +I+ EL  +  +    RRT I     D+   D I  ED+VVT
Sbjct: 483 EKIADLLDILGDPERLMQVIRDELAEIVSQYGDERRTEITSSRRDLTIADLIDEEDLVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDF+  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P GS  +RG+ ++NIL L++GERITT +P  +      + +V+ AT  G V++  
Sbjct: 603 RVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDY---PEDQFVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++         +++L +  G+ VRF    +R  + R +
Sbjct: 660 LPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI + +G  V+S+ I                                         
Sbjct: 719 RGVRGIKMPEGHHVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +   ILT SE G+GKRT+  +F   +R  +G+ A   S+ N  G L
Sbjct: 738 ------------PQEGGVILTASEHGYGKRTAIDEFPAYSRGSQGVIAMQCSERN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIR 898
           V    + D DQ++L+SDKGTL+R   +E+ + SR T+GV +   A +DER+V VERI 
Sbjct: 784 VTALQLFDGDQMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIRLAQEDERLVGVERIA 841


>gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
 gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
          Length = 891

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/917 (44%), Positives = 570/917 (62%), Gaps = 84/917 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A+I NPD+ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVINGCLALIVNPDLTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR SP P  A+  L  RSW   ++K +++
Sbjct: 366 TVFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLE 425

Query: 433 LIDDSSYTIG---------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +++              DG  ++SE Q +AIL+LRL +LTGL  + I +E  +L   
Sbjct: 426 KAGEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLLDL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLHILASPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT I+P  E E    + Y+  AT  G V++  L+
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVREYEE---DKYIFMATAFGTVKKTPLT 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF------- 716
            + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +            
Sbjct: 663 AYSRQRASGIIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAEESAVVDENGNP 722

Query: 717 ---------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                     GR + GVRGI +    +V+S+                             
Sbjct: 723 EIRFKGVRPMGRTATGVRGIKMTDEQRVVSLI---------------------------- 754

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                    +   +  ILTV+E G+GKRT   D+   +R+ +G+
Sbjct: 755 -------------------------VPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGV 789

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  VS+ N  GA+V    V+DND+I+L+S++GTL+R  VNE+    R T+GV++  T  
Sbjct: 790 VSIKVSERN--GAVVGAVQVDDNDEIMLISNRGTLVRTRVNEVSTVGRNTQGVILIRTID 847

Query: 888 DERVVSVERIRESEIVD 904
           +E+VV ++RI E E+ +
Sbjct: 848 EEQVVGLQRIEEIEVTE 864


>gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
          Length = 904

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/905 (45%), Positives = 566/905 (62%), Gaps = 35/905 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNPDID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   L+E+Q   ILE+RL RLTGL +D + +E   L  
Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL++VK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     E DILL    G+ VRF    +R    R + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A    DE              I+ + + +    +D+SV+
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGIEDE-----NEDDNGVEEIAANGDAVIDGADDASVQ 773

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 774 ----------------YILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAE 907
            DE E
Sbjct: 876 EDEDE 880



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 108/281 (38%), Gaps = 35/281 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PL  +    R  +G+  + + + D +  + 
Sbjct: 628 ERVQAVLPVREYADGQFVFFATKNGTVKKTPLGEF--AFRLARGKIAINLDEGDALVGVG 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---- 637
                  +L F+S G   +    ++      A G   +  + +  GE + +++       
Sbjct: 686 RTDGERDILLFASNGKTVRFGEDKVRSMGRTATG---VRGIKMPAGEEVVSLIVAESAGG 742

Query: 638 -EDESSWNN---------------------LYVVFATKHGNVRRNKLSDFIQINRS--GK 673
            EDE+  +N                      Y++ AT++G  +R  L D+ +  R   G 
Sbjct: 743 IEDENEDDNGVEEIAANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           I ++      ++++       +++LL +  G  VR   S I    GRN+ GV  I L+K 
Sbjct: 803 IGIQTTERNGKLVAAVLMGSGDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKD 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +++ ++  +  +  + ++ +      +      +  +E+  
Sbjct: 862 EKLQAVERMDASIDEDEDEVAAAAPAATDGIPAAASSEDAA 902



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 16/231 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+S  R             +  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAAT-KEEDFIEQLWLVNTHDTLL 590

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++ ++          +     I +       E   +    +E     QF+   +
Sbjct: 591 TFTSSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE-YADGQFVFFAT 649

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K+T   +F    R  +G  A ++ + +   ALV V   +    I+L +  G  +R
Sbjct: 650 KNGTVKKTPLGEFAF--RLARGKIAINLDEGD---ALVGVGRTDGERDILLFASNGKTVR 704

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-----ESEIVDEAESTE 910
              +++R   R   GV        E VVS+         E E  D+    E
Sbjct: 705 FGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGIEDENEDDNGVEE 755


>gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
 gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
          Length = 899

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/935 (43%), Positives = 573/935 (61%), Gaps = 96/935 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+I NP++ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLALIQNPELTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L  R W   ++K ++D
Sbjct: 366 TVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLD 425

Query: 433 --------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                     D  +  +G  DG  Y+SE Q +AIL+LRL +LTGL  + I  E  SL   
Sbjct: 426 KAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLEL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL++  RL+ +I+ EL+ +K++    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLFILANPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLINEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   L+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT I+P  + E   ++ Y+  AT  G V++  L+
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVRDYE---DDKYIFMATAFGTVKKTPLT 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF------- 716
            + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +            
Sbjct: 663 AYSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETAVVDENGNP 722

Query: 717 -----------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                             GR + GVRGI +    +V+S+ +                   
Sbjct: 723 VLDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRVVSLIV------------------- 763

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                +  ILTV+E G+GKRT   D+  
Sbjct: 764 ----------------------------------PKNDGAILTVTENGYGKRTQLEDYPS 789

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T+G
Sbjct: 790 KSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQG 847

Query: 880 VVIFSTAKDERVVSVERIRESEIVD----EAESTE 910
           V++  T  +E+VV ++RI E E+ +    + E  E
Sbjct: 848 VILIRTIDEEQVVGLQRIEEIEVTESDLVDIEDVE 882


>gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99]
 gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99]
          Length = 907

 Score =  823 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/924 (43%), Positives = 560/924 (60%), Gaps = 86/924 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI  AY TGRG  ++R  
Sbjct: 186 NITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIEAYKTGRGRAIMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + ++     RE+I+V E+PYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+VIE
Sbjct: 246 ADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ S  P  A+ +L+ + W    +K +++ 
Sbjct: 366 VFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   YL+E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RLL +IK+EL  + +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILHSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG+    ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ ++N+L L++GE IT I+P  +     ++ YV+ AT HG V++  L  +
Sbjct: 606 LPLASRQARGRPIVNLLPLSEGEHITAILPVRDYA---DDKYVIMATSHGTVKKTALKAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI----SAIRVF----- 716
                +G IA+ L   D+++ V+    ++DI+L +  G+ VRF      S   +      
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAE 722

Query: 717 ----------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                      GR + GVRGI L  G +V+S+ +                          
Sbjct: 723 TNEELVALRPMGRTATGVRGIRLEDGQKVVSLIV-------------------------- 756

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                         +  ILT++E G+GKRT+  ++   +R+ KG
Sbjct: 757 ---------------------------PKADGAILTITENGYGKRTALDEYPAKSRATKG 789

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + +  VS+ N  GA+V    V +ND+I+L+SD+GTL+R P   +    R T+GV I  TA
Sbjct: 790 VVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRTA 847

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
           + E+VV ++RI E    DE E  E
Sbjct: 848 EGEKVVGLQRIDEI-HEDEVELDE 870


>gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1]
 gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1]
          Length = 921

 Score =  823 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/953 (42%), Positives = 562/953 (58%), Gaps = 109/953 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELEEADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    RN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+   E E+ D  E+ E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDDVVEADE 899


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  823 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/908 (42%), Positives = 549/908 (60%), Gaps = 78/908 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEVV+GC+  + NP+  +D L+EII  PDFPTG +I G  G++  Y TGRG ++
Sbjct: 182 IPPHNLGEVVEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIYGMVGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IVV  IPYQVNK  + E+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLISYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM R+W++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                  + +  DG   LSE Q + IL +RL RLTGL +D I
Sbjct: 422 EMLARADGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR+ I     +++ 
Sbjct: 482 IGEYKDVMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +
Sbjct: 542 EDLITPMDMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE+IT ++P  E     ++ YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKE---FSDDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R    R + GVRG+ L     VI++ +                             
Sbjct: 719 ENDVRPMG-RAARGVRGMMLEDSQSVIALLVAGD-------------------------- 751

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRTS  ++    R  KG+ A
Sbjct: 752 --------------------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    VN +D+I+L++  G L+R  V+EIR   RAT+GV + S     
Sbjct: 786 IQTSSRN--GRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGS 843

Query: 890 RVVSVERI 897
            +  V R+
Sbjct: 844 SLSGVRRV 851


>gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
 gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
          Length = 866

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/908 (44%), Positives = 557/908 (61%), Gaps = 70/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+N D+ +D LME I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGGIINGRAGILQAYRTGRGRIYVRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H+E+     +  +++TEIPYQ+NKA ++EKIAELV++K+I  I +LRDESD+ G R+VI
Sbjct: 246 HHVEEDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   DV++N L+  T ++S+F +NMVAL   +P+   L   L+ F+  R EVV RR
Sbjct: 306 ELRRGEMPDVVINNLFAQTQMESVFGINMVALVDGQPKILDLKTALECFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLA+A+AN+D V+ +I+ SP P  A+  L+  +W   D+  +++
Sbjct: 366 TVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              + +             +G   LS  Q +AILELRL RLTGL  + +  E   L   I
Sbjct: 426 RAGEDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLERI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL ++ +E    RRT I     D+   D I  EDMVVT+SH
Sbjct: 486 AELLKILGSHERLMEVIREELEAILEEYGDERRTEITASRKDLTVADLITEEDMVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y++QRRGGKG+S   ++DEDF+  L I +TH ++L F+  G VY  +V+
Sbjct: 546 GGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVYWLRVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ S  ARG+ ++NIL L++GERI+TI+P    E    + ++  AT  G V++  L++
Sbjct: 606 EIPVASRTARGRPIVNILPLDEGERISTILPVGGYEE---DKFIFMATASGTVKKTALTN 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   D ++       E+D++L T  G+ +RF    +R    R + GV
Sbjct: 663 FSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ +  G +VIS+ I                                            
Sbjct: 722 RGVKMDDGVKVISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      +   ILT SE G+GK+T+  DF +  R G+G+ A   S  N  G+L   
Sbjct: 738 ---------PQEGGKILTASENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRN--GSLAGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D ++L+SD+GTL+R   +EI    R T+GV +   A DER+VSV RI E E  +
Sbjct: 787 VQVFDGDDVMLISDQGTLVRTGGDEISELGRNTQGVTLIRVADDERLVSVARIEEPEEDE 846

Query: 905 --EAESTE 910
             + E +E
Sbjct: 847 LLQGEESE 854


>gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121]
 gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121]
          Length = 893

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/907 (44%), Positives = 562/907 (61%), Gaps = 77/907 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +   +WNK 
Sbjct: 3   ELAKEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G V+GKYHPHG+ A+YDA+ R+AQ +S+R  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH  L DL K+TVDF PNYDG+   P V+  R P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A+IDN  I +D LME I GPDFPT A I GR GI +AY TGRG I +
Sbjct: 183 PPHNLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFINGRAGIVDAYKTGRGKIYM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   HIE    G+RE IV TEIPYQ+NKA ++EKIAELV++K++  I++LRDESD+ G R
Sbjct: 243 RARHHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG +ADV++N L+  T LQ +F +NMVAL   +PE   L  +L+ FV  R EVV
Sbjct: 303 IVIELRRGENADVVVNNLFIQTQLQGVFGINMVALVDGRPELLNLKQVLECFVKHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R HVL GLA+A+AN++E++ +IR SP    A+ +L+ ++W   D+  
Sbjct: 363 TRRTIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSA 422

Query: 430 LIDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++         DD     G  DG+ YLS VQ +AIL+LRL RLTGL  + ++NE  +L 
Sbjct: 423 MLERAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L IL+S +RL+ +I++EL  +K +    RRT I+    D+   D I    MVVT
Sbjct: 483 ELIAELLHILASPARLMEVIREELEEIKAQFGDVRRTEILTSRQDLTVADLIDEAPMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY K  PL  Y+AQRRGG+G+S   M+DED ++ L + S+H +++ FS+ G VY  
Sbjct: 543 ISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-----------SSWNNLYVVF 650
           +V+ +P+ S  A+G+ ++N+L L++GE I+ ++P    E           S     ++  
Sbjct: 603 RVFEIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKSDAEDAETEVSEDAESFIFM 662

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT +G V++  +  F +   +G IA+ LD  DE++ V      +DI+L +  G+ +RF  
Sbjct: 663 ATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSSTGKTIRFKE 722

Query: 711 SAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S +R    R + GVRGI LA +G +V+S+ +                             
Sbjct: 723 SDVRAMG-RTAAGVRGIKLAAEGAKVVSLIV----------------------------- 752

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     +   +LT  E G+GKRT+  DF +  R G+G+  
Sbjct: 753 ------------------------PEEGMSVLTACEHGYGKRTAIDDFPVYGRGGQGVIG 788

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             VS  N  G +V    V D+D+IIL++D+GTL+R  V+E+    R T+GV +     +E
Sbjct: 789 IQVSDRN--GPVVGAVQVADDDEIILITDQGTLVRTRVSEVSCQGRNTQGVTLIRLTNEE 846

Query: 890 RVVSVER 896
           ++V V R
Sbjct: 847 QLVGVVR 853


>gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
 gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
          Length = 859

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 568/910 (62%), Gaps = 70/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVDF  NYDG+ Q P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+V+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQGIINGRAGIVEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE     +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G R
Sbjct: 243 RARHEIEHDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DV++N L+ +T LQ++F +NMVAL   +P+   L  +L AFV  R EVV
Sbjct: 303 VVIELRRGENPDVVINNLFAHTQLQTVFGINMVALINGEPKILNLKEMLDAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP    A+ +LM + W   D+  
Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + L+IL    RL+ +I++EL +V  E    R T I     D+   D I  ED+VVT
Sbjct: 483 EKIADLLEILGDPDRLMQVIREELEAVVSEFGDNRLTEITSSKRDLTIADLIDEEDLVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  +RG+ ++NIL L +GERITT +P  +      + YV+ AT  G V++  
Sbjct: 603 RVFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDY---PEDQYVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   +G IA+ LD  D ++       + +++L +  G+ VRF   A+R  + R +
Sbjct: 660 LPNFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI + +G  V+S+ I                                         
Sbjct: 719 RGVRGIRMPEGHHVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++  +LT SE G+GKRT+  +F   +R  +G+ A   S+ N  G L
Sbjct: 738 ------------PQEDAVLLTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           V    + + D+++L+SDKGTL+R   +E+ + SR T+GV +   + +DER+V VERI E+
Sbjct: 784 VTALQLFEGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843

Query: 901 EIVDEAESTE 910
           +  +E +  E
Sbjct: 844 DA-EEVDGEE 852


>gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
 gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
          Length = 895

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/911 (43%), Positives = 566/911 (62%), Gaps = 70/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVDF PNYDG+ Q PVV+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV GC+A+ID+PD+ +D LME I GPDFPT  +I GR GI  AY TGRG + I
Sbjct: 183 PPHNLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRVYI 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    +E      R+ +++TE+PYQ+NK+ ++EKIAELV+EKR+  I +LRDES+++G R
Sbjct: 243 RARHEVEHDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DVI+N L++ T L+++F +NMVAL   +P    L  +L AF+  R EVV
Sbjct: 303 VVIELRRGENPDVIINNLFKQTQLETVFGINMVALIDGEPRILNLKEMLDAFIRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+A+AN+DE++ +I+ SP+   A+ +L+ + W + D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I + LDIL +  RL+ +I+ EL ++ +E    RRT I     D+   D I  E++VVT
Sbjct: 483 ERIADLLDILGNPERLMQVIRDELQAIVEEFGDERRTEITSSRRDLTVADLIDEEELVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  +RG+ ++NIL L++GERITT +P  +      + +V+ AT  G V++  
Sbjct: 603 RVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDY---PEDQFVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++         +I+L +  G+ VRF   A+R  + R +
Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI +A+G  V+S+ I                                         
Sbjct: 719 RGVRGIRMAEGHHVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          +  +L  SE G+GKRT+  +F    R  +G+ A   S  N  G L
Sbjct: 738 ------------PQDDAVLLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           V    + D D+++L+SDKGTL+R   +E+ + SR T+GV +   + +DER+V VERI E+
Sbjct: 784 VTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843

Query: 901 EIVD-EAESTE 910
           +  +   E TE
Sbjct: 844 DAEEIIGEDTE 854


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/915 (41%), Positives = 551/915 (60%), Gaps = 77/915 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 13  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 72

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 73  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 132

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 133 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 192

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  PD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 193 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 252

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 253 MRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 313 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIEVFLQHRREV 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  ++
Sbjct: 373 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 432

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +   G   LS+ Q + IL++RL RLTGL +D 
Sbjct: 433 EMLTRTRADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDK 492

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDIL+  +R+  II +EL +++ E        RR+ I     D+ 
Sbjct: 493 IVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLS 552

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 553 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDY 612

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P      +   + Y
Sbjct: 613 ILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADHY 672

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 673 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 732

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    R + GVRG+ L  G  VI+M +                           
Sbjct: 733 FDENDVRPLG-RQARGVRGMMLEDGQSVIAMLVAED------------------------ 767

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 768 ----------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGM 799

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 800 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 857

Query: 888 DERVVSVERIRESEI 902
             ++  ++RI E++ 
Sbjct: 858 GAKLSGLQRIVENDA 872



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 14/224 (6%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
                 +  V   + +G VK+  L  +   R+G  G   V + D D++    +      V
Sbjct: 664 MRTFPADHYVFMATSMGTVKKTALDEFSNPRKG--GIIAVNLDDGDYLIGAALTDGQHDV 721

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + FS  G   +     +     QARG   +  + L  G+ +  ++   EDE    N  V+
Sbjct: 722 MLFSDGGKAVRFDENDVRPLGRQARG---VRGMMLEDGQSVIAML-VAEDE----NQSVL 773

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCV 706
            AT++G  +R  + ++ +  R  K  + +       ++++      +++I+L T  G  V
Sbjct: 774 TATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLV 833

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           R  +S IR    R + GV  ISL +G ++  +  ++  DA+  +
Sbjct: 834 RTRVSEIRELG-RATQGVTLISLDEGAKLSGLQRIVENDANATD 876


>gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
 gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
          Length = 871

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/910 (44%), Positives = 561/910 (61%), Gaps = 70/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAREISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL KDTVD+  NYDG+ Q PVVL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMSKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+ C+A+I++ DI +D LM  + GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLREVVNACLALINDSDITIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I      R+ I++ EIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RAKAEVITDEKTGRDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL++G   DV+LN LY  TSLQ++F +NMVAL   +P    L  IL+AF+  R EVV
Sbjct: 303 VVIELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT YLL KAR+R HVL GLAIA+AN+D V+ +++ SP+P  AR  L+ +SW   ++  
Sbjct: 363 TRRTLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTS 422

Query: 430 LIDLIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +         Y        LS  Q +AIL+LRL RLTGL  + +  E     
Sbjct: 423 MLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + +DIL    RLL +I++EL  +  E    RRT I +   D+  ED I  ED VVT
Sbjct: 483 IEIADLMDILQDPERLLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y+ QRRGG G++ + ++DEDFV  L I +TH ++L FS+ G VY  
Sbjct: 543 LSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWI 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+    +RG+ ++N+L L++GER+T+I+P    E   ++ ++  AT +G V++  
Sbjct: 603 KVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPL---EEHTDDRFIFMATANGYVKKTD 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F     +G  A+ L   D ++         D++L +  G+  RF  SA+R    R S
Sbjct: 660 LASFA-PRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPMG-RAS 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI+LA+G ++IS+ +                                         
Sbjct: 718 RGVRGINLAEGHRMISLLV----------------------------------------- 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +LTVSE G+GKRT+  DF    R GKG+ A   S+ N  G L
Sbjct: 737 ------------PDATGTVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRN--GRL 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V   D+++L+S++GTL+R   +++    R T+GV I  T + E +V  ERI ESE
Sbjct: 783 VGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRAERIVESE 842

Query: 902 I-VDEAESTE 910
             ++  E+TE
Sbjct: 843 ASLESPEATE 852



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/475 (14%), Positives = 163/475 (34%), Gaps = 28/475 (5%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGILKAFVAFREEVVVRR 372
           L +      + + L R  +              +  E   +              +    
Sbjct: 411 LAQSWMPGEVTSMLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLE 470

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            + LL + +D+   +  L   + + + ++ +IR      TA     +R     D ++ + 
Sbjct: 471 HEKLLKEYQDKLIEIADLMDILQDPERLLAVIREELEEITAEFG-DERRTEIRDSQEDLT 529

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--IKECLDI 490
             D  +         +    +T+ + E ++ R  G+G+  +  +         I    D 
Sbjct: 530 AEDLITPEDRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDT 589

Query: 491 LSSRSRLLGIIKQELLSV----KDELDTPRRTRIVEGLLDMEDEDCIVREDM----VVTV 542
           L   S    +   ++  +    +     P    +     +       + E      +   
Sbjct: 590 LLCFSNFGKVYWIKVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEEHTDDRFIFMA 649

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVK+  L+ +  +  G +    +V+ D+D +    I      V+ FSS G   +  
Sbjct: 650 TANGYVKKTDLASFAPRSAGLR---AIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFS 706

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      +RG   +  ++L +G R+ +++             V+  +++G  +R  +
Sbjct: 707 ESAVRPMGRASRG---VRGINLAEGHRMISLLV------PDATGTVLTVSENGYGKRTAV 757

Query: 663 SDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            DF    R GK  + + S      ++        ++++L +  G  VR     +     R
Sbjct: 758 DDFPTKGRGGKGVIAMASSQRNGRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQLG-R 816

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           N+ GVR I   +G+ ++    ++ ++A  +         + +    +G+ E    
Sbjct: 817 NTQGVRIIRTKEGETLVRAERIVESEASLESPEATEGSAATEGTEGAGNIEGGEG 871


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/904 (41%), Positives = 558/904 (61%), Gaps = 86/904 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +E+  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  ++N+L +++GE +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E     
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEEDGSE 816

Query: 907 ESTE 910
           E++E
Sbjct: 817 EASE 820


>gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
 gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
          Length = 856

 Score =  821 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/893 (45%), Positives = 564/893 (63%), Gaps = 58/893 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR+ 
Sbjct: 10  VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGSVDGD PAA RYTE R+ + 
Sbjct: 70  GDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMYQL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL D+ K+TV+  PNYD S +EP+VL A++PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 130 AHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLAEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE- 257
           +DG VAVI NP++  + L+ +I GPDFPT   I GR GI +AY+TGRG I +R  + +E 
Sbjct: 190 IDGIVAVIHNPELTFEELIALIPGPDFPTAGFIYGREGILSAYSTGRGIIQMRARAIVET 249

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +R+ IVVTEIPYQVNKA ++EKIAELVREK+I  I+DLRDESDR+G RVV+ELK+ 
Sbjct: 250 HKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRVVVELKKD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +  ++LN LY+ T +QS F + M+A+   +P+  TL   +  F+  R E+V RRT + L
Sbjct: 310 ENPQIVLNHLYKQTQMQSSFGIIMLAIVNNRPKVLTLRETINHFIDHRREIVTRRTIFDL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+  LD V+ +IR S NP  A+  LM   ++  +    + L   +
Sbjct: 370 KKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEWLKKLGLSLPA 429

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++   +   M LSE+Q +AILE+RL RLTG+ RD I +E + +   I    +IL+S + +
Sbjct: 430 NHAEYAKPVM-LSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLKEILASETEI 488

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L II  ELL +K++    RRT I++   ++  ED IV EDMVVT+SH GY+KR  +++YR
Sbjct: 489 LKIIVGELLELKEKFGDKRRTEIIDQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTMYR 548

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG++G+  ++EDFV  LFI S+   ++FF+  G VY  KV+ +P      RGKA
Sbjct: 549 AQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKA 608

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L+L+  E+IT I+P  E  +   + +++ AT+HG V++  L ++      G IA+ 
Sbjct: 609 IVNLLNLSANEKITAILPVKEFAA---DKFIMMATRHGVVKKTPLMEYSHPRLGGIIAVN 665

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  D+++SV       D+LL ++ G+ +RF  S +R    R S GVRG++L   D VI 
Sbjct: 666 LDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRTVG-RVSRGVRGMTLEDDDVVIG 724

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I+     D                                                  
Sbjct: 725 MEIINEEYTDS------------------------------------------------- 735

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             + TV+E GFGKRT   ++R  +R GKGI     ++ N  G +V +  V D + ++L++
Sbjct: 736 -TLFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTERN--GCVVDIKQVVDENDLMLIT 792

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D+G ++RVPV    I  R T+GV +  T  DERVV+V R+ E E  D  EST+
Sbjct: 793 DQGKILRVPVEGFSIIGRNTQGVRLMVTEDDERVVAVARLAEKEEDDADESTD 845


>gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 900

 Score =  821 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/889 (50%), Positives = 614/889 (69%), Gaps = 61/889 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ MM+   +W K   K ARI 
Sbjct: 20  ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG+++IY+A+ RMAQD+S+RL L++GQGNFGSVDGDP AA RYTE RL +A
Sbjct: 80  GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV+F  NYD +  EP VL A YPN+LVNG  GIAVGMATNIP HN GEV
Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +  C A ++NP+I  + L EI+ GPDFPTGA+I+GR GI+ AY TGRGSI++R  + ++ 
Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGALIMGRHGIREAYRTGRGSIIMRARAEVQT 259

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + DRE I+V EIPYQVNKA +LE+I E+VR+K +  I+D+RDESDR G R+VIE+KR A
Sbjct: 260 NAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRDA 319

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LN+LYR+T LQ+ F VNM+A+N  +P +  L  +++AF  FR++VV++RT +LLN
Sbjct: 320 AGDVVLNKLYRHTRLQTSFPVNMLAMNAGRPIQMGLKDVIEAFCEFRKDVVIKRTTFLLN 379

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+RDRAH+L GL +A+A++DE++ +I+ +P+ ETAR EL   +W A ++   I LIDD  
Sbjct: 380 KSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDDPG 439

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  D    LSEVQ RAILELRL RLTG+ RD +  E   L  +I + LDIL S +R+ 
Sbjct: 440 HAV-VDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRVS 498

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I  EL + ++ L   RRT I + L D +DED I +EDMVVTVSH GY+KRVPLS+YRA
Sbjct: 499 QVILDELAATRERLSDDRRTEITDQLADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYRA 558

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKGR+G+  RDEDFVT LF+ +THT +LFF+S G VY+ K ++LP  +PQ+ GKA+
Sbjct: 559 QRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPESAPQSLGKAM 618

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L +   E I T+MP P+DESSW +L V+FAT  GNVRRN LSDF  I R+GKIAMK+
Sbjct: 619 VNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKRNGKIAMKM 678

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE++ V  C  ++D+L+ T+ G+ +RF  +A+RVF GR+S GVRGI L   D+V+SM
Sbjct: 679 QDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVSM 738

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           +I+   + +                                                   
Sbjct: 739 SIIADPENE--------------------------------------------------- 747

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +IL+V+E G+GKRT   D+R S R G+G+   ++S  N  G ++A F V + DQ++LV++
Sbjct: 748 YILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRN--GQVMASFTVVEEDQLMLVTN 805

Query: 859 KGTLIRVPV-----NEIRIASRATKGVVIFSTAK--DERVVSVERIRES 900
           +G +IR+ V     + IRIASR T GV +F  A   DE+VVS   I ES
Sbjct: 806 QGQIIRIRVHGGEGDSIRIASRKTLGVRLFDVADDNDEKVVSAGLIHES 854


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  821 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 557/903 (61%), Gaps = 86/903 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +E+  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  ++N+L +++GE +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E  D +
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEEEDGS 816

Query: 907 EST 909
           E  
Sbjct: 817 EEA 819


>gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
 gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
          Length = 946

 Score =  821 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/930 (48%), Positives = 615/930 (66%), Gaps = 37/930 (3%)

Query: 1   MTEHIISSDEEEEKGIT--SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I + D     G     + I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+
Sbjct: 1   MADDIDTIDTPVPGGEEHTRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
              + G    + + K A+I G+VMG YHPHG+AAIYDALARM Q+WSLR+ LI+GQGNFG
Sbjct: 61  ASNEGGFVAGRPFRKSAKIVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+D DPPA+ RYTE RL + A+ LLDDL KDTVDF  NYDGS +EP VL AR+PN+LVNG
Sbjct: 121 SMDPDPPASMRYTEARLARVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+DGC A +DNP I  + L EII GPDFPT  +ILG+TG +
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDGCFAYMDNPAITNEELFEIIPGPDFPTAPLILGKTGAR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSI+ R    IE+  GDR+ IV+T IP+QV K+ ++EKIAE  ++KRI  I+D
Sbjct: 241 AAYTTGRGSILQRARHEIEERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDES RQG RVV++LKR ASA+V+LNQ++RYT  QS F  NM+A++G +PE  TL   +
Sbjct: 301 IRDESSRQGVRVVVDLKRDASAEVVLNQIWRYTPAQSSFPANMLAISGGRPEVLTLREFI 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FREEV+ RRTKY LNKARDRAH+L+GL +AV+NLDEVV +IR +P P  AR  L+
Sbjct: 361 QAFITFREEVITRRTKYELNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            + W   DI   I L++    +   + GT  LSE Q +AIL+LRL RLT LGRD+I +EL
Sbjct: 421 AKEWPIGDIAQYIALVEAIEPSDEQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGDEL 480

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L + I+E L IL+ R +L G+++ EL  ++    TPR + I      ++DED I RE+
Sbjct: 481 KLLSLSIEEYLSILADRVKLYGVMRGELEEIRAAYATPRVSEIAPAWDGIDDEDLIEREE 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTV+H GY+KR PL  +RAQ RGGKGRSG+  +DED V +LF+ STH  VLFF++ G 
Sbjct: 541 MVVTVTHGGYIKRTPLDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGR 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ KVW+LP G PQ +G+ ++N+L L   ER+T ++  PEDE+ W  L +VFAT+ G V
Sbjct: 601 VYRMKVWKLPEGGPQTKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMV 660

Query: 658 RRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           RRN +  F  +  +GK AM    DS D ++ VE  T++ +I L +  G+ +RF  +  R 
Sbjct: 661 RRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARE 720

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R  +GVRG+ L +G +V+SMA++   + D + R  Y++                 + 
Sbjct: 721 TKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLR----------------AAE 764

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVS 833
             ++  +  +  E+ +E+   E+FILT++ +G+GK +S+Y++R   R G G+       S
Sbjct: 765 WKNNENDYTLDAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSS 824

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-------------EIRIASRATKGV 880
             +  G +VA FPV    Q++LV+D+  LIR+P+N                I+ R + GV
Sbjct: 825 NPDRNGTVVASFPVKHGSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGV 884

Query: 881 VIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IF+ AK E++V    I E+E   E ++ E
Sbjct: 885 RIFNVAKGEQIVGAALIDETE-EPENQAEE 913



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 112/318 (35%), Gaps = 53/318 (16%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T ++    D  +   +     +V  +  G V+R  +  +      GK   G V  
Sbjct: 629 DDERVTNVLALPEDEAEWAKLN----IVFATEQGMVRRNSMDAFTNVPSNGKYAMGFVED 684

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR----------GKALINIL 622
             D +  + +++    +   S  G   +           +            G+ ++++ 
Sbjct: 685 SGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARETKSRTGIGVRGMKLKEGQKVVSMA 744

Query: 623 SLNQGERITTIM-------------------PFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            L+ GER T +                        +E +    +++  T  G  + +   
Sbjct: 745 VLDAGERDTEVREAYLRAAEWKNNENDYTLDAEKVEEMAEAEEFILTLTSRGYGKISSAY 804

Query: 664 DFIQINRSGKIAMKLDSRDE-------ILSVETCTQENDILLTTKLGQCVRFPIS----- 711
           ++  I R G     +            +++       + ++L T   + +R PI+     
Sbjct: 805 EYRTIGRGGMGLTNIGEPSSNPDRNGTVVASFPVKHGSQLMLVTDQAKLIRLPINFRYLL 864

Query: 712 -------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                       +GR S GVR  ++AKG+Q++  A++   +   ++    ++   A R  
Sbjct: 865 ENGFENHEGYSISGRGSSGVRIFNVAKGEQIVGAALIDETEEPENQAEELVQDEIAARGG 924

Query: 765 ISGDTEEITSLKNDSSVE 782
           ++  TE  T+  +D ++E
Sbjct: 925 LN-KTEPYTTAHSDKNIE 941


>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
 gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
          Length = 848

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/895 (44%), Positives = 564/895 (63%), Gaps = 62/895 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR+ 
Sbjct: 11  VNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSARVV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD PAA RYTE R+++ 
Sbjct: 71  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMKQL 130

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            H LL DL K+TV F PNYD S  EP VL A++PN+LVNG  GIAVGMATNIP HNLGE+
Sbjct: 131 THELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNLGEI 190

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I NP +  + L+E++ GPDFPTG  I GR GI + YATGRG I IR  +H+E 
Sbjct: 191 IDAIIALIHNPALSYEELLELVPGPDFPTGGTIYGRQGIIDGYATGRGVIQIRAKAHVEN 250

Query: 259 TSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DRE IVVTEIPYQVNKA ++  IAELV+EK+I  I+DLRDESDR G R+VI+LK+ 
Sbjct: 251 SKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVIDLKKD 310

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +A+V+LNQLY++T +Q+ F +NM+A+   +P+  +L  ++  F+  R E+V +RT + L
Sbjct: 311 ENAEVLLNQLYKHTQMQTSFGINMLAIVHNRPKLMSLAEMMHYFIEHRREMVTKRTLFEL 370

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+  LD V+ +IR S  P  A+  LM+  +   D    ++L   +
Sbjct: 371 KKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNLPRPA 430

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            Y         LSE+Q +AILE+RL RLTGL RD I  E   +   I    +IL S + +
Sbjct: 431 GYEKAVQ----LSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAEI 486

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  +K+     RRT IV    D+  ED I   +MVVTVSH GY+KR  + +YR
Sbjct: 487 MKIIVGELTEIKERFGDKRRTEIVHQTADISLEDTIEDAEMVVTVSHTGYIKRSAVDLYR 546

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG++G+  R+EDFV  LFI ST   +LFFS +G VY+ KV+ +P GS   +GKA
Sbjct: 547 AQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPEGSRTTKGKA 606

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N++++ +GE+IT I+P  +   +  +LY++ AT++G V++  L +++ I  +G  A+ 
Sbjct: 607 VVNLVNVQEGEKITAILPVKDL--NREDLYLLMATRNGVVKKTPLVEYLNIRTTGINAVN 664

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  D+++SV     + D+ L ++ G+ +RFP S  R    R + GVRG++L   D+VI 
Sbjct: 665 LDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPMG-RVTRGVRGMNLEARDEVIG 723

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M +V                                                        
Sbjct: 724 MEVVDPT--------------------------------------------------ATG 733

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             I T++E GFGKRT   ++R  +R GKG+     +  N  G +V V  VND +Q+++++
Sbjct: 734 STIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRN--GLVVGVMQVNDENQLMVIT 791

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EAESTE 910
           D+G ++RVPV    +  R T+GV +  T + E++V+V ++ E +  D  E E  E
Sbjct: 792 DQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVAKLAERDDEDGIEPEGEE 846


>gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48]
 gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas
           entomophila L48]
          Length = 920

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/953 (42%), Positives = 559/953 (58%), Gaps = 109/953 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAGLINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINIVALIDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             +G  YLS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I++   D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILDARHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
            K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 LKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEELEDGDDGVIE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    R + GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RTARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L     V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLTGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAESTE 910
           TL+R  V E+    R T+GV +   A DE +V VER++   E E+ +  E+ E
Sbjct: 847 TLVRTRVGEVSSLGRNTQGVTLIKLAADETLVGVERVQEPSEEELDELIETDE 899



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 97/257 (37%), Gaps = 15/257 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D  +         +   +  G VK+ PL  +   R    G   + +++ D +    I  
Sbjct: 676 GDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRS--NGLIALKLKEGDTLIAAAITD 733

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ FS  G V +     +      ARG   +  + L +G+RI +++  PE     +
Sbjct: 734 GAKEVMMFSDAGKVIRFAESVVREMGRTARG---VRGMKLGKGQRIISML-IPE-----S 784

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRDEIL-SVETCTQENDILLTTK 701
              ++ A++ G  +R  LS F +  R G   IAM    R+ +L       +  +I+L + 
Sbjct: 785 GAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLTGAIQVQEGEEIMLISD 844

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +     RN+ GV  I LA  + ++ +  V     +  + +       A 
Sbjct: 845 QGTLVRTRVGEVSSLG-RNTQGVTLIKLAADETLVGVERVQEPSEEELDELIETDEEGAP 903

Query: 762 RRLISGDTEEITSLKND 778
              +  D         +
Sbjct: 904 LDAVGEDNAGAEEAPQE 920


>gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN]
 gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN]
          Length = 878

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 556/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R ++H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRALTHFEEIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + S+ + SDG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLSRAETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II  EL S+K E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ++MVVT+SH GYVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +INI  L +GE+IT ++P  E  +   + +V   
Sbjct: 602 FSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMG 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L  G  VI++ +                               
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQNVIALLVAGD---------------------------- 749

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 750 ------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849


>gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1]
          Length = 919

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELLDEADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    RN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 15/256 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D  +         +   +  G VK+ PL  +   R    G   + +++ D +    I  
Sbjct: 676 GDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRS--NGLIALKLKEGDTLIAAAITD 733

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ FS  G V +     +      ARG   +  + L +G+RI +++  PE     +
Sbjct: 734 GAKEVMMFSDAGKVIRFAESVVREMGRNARG---VRGMKLGKGQRIISML-IPE-----S 784

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTK 701
              ++ A++ G  +R  LS F +  R G+  + + ++     ++      +  +I+L + 
Sbjct: 785 GSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISD 844

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +   + RN+ GV  I LA  + ++ +  +     D  + +        +
Sbjct: 845 QGTLVRTRVGEVSSLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVE 903

Query: 762 RRLISGDTEEITSLKN 777
                       + + 
Sbjct: 904 AEAPDEAAGAEEAPQE 919


>gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619]
 gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619]
          Length = 923

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/947 (43%), Positives = 562/947 (59%), Gaps = 108/947 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIVVTE+PYQ+NKA ++EKIAELV++K+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALIDGRPRVLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  AR  L+  +W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  YLS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDESSWNN----- 645
           +K + +P  S  ARG+ L+N+L L +GERIT ++            P++E    +     
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELEDGDEGVIE 662

Query: 646 -------------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                                     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GEVVEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    R + GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RTARGVRGMKLGKGQQIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E   E +DE
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEEELDE 893



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 101/263 (38%), Gaps = 20/263 (7%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D  +         +   +  G VK+ PL  +   R    G   + +++ D +    I  
Sbjct: 676 GDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRS--NGLIALKLKEGDTLIAAAITD 733

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ FS  G V +     +      ARG   +  + L +G++I +++  PE     +
Sbjct: 734 GAKEVMMFSDAGKVIRFAESVVREMGRTARG---VRGMKLGKGQQIISML-IPE-----S 784

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTK 701
              ++ A++ G  +R  LS F +  R G+  + + ++     ++      +  +I+L + 
Sbjct: 785 GAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISD 844

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +   + RN+ GV  I LA  + ++ +  +     +  + +       A 
Sbjct: 845 QGTLVRTRVGEVSSLS-RNTQGVTLIKLAADETLVGLERIQEPSEEELDELV-----GAD 898

Query: 762 RRLISGDTEEITSLKNDSSVEGN 784
              +  D  E     N  + E  
Sbjct: 899 EEGVELDAPEAADDDNAGAEEAP 921



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 15/160 (9%)

Query: 763 RLISGDTEEITSLKNDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            +I  + E I +   D+     ++   +    ++  +E+ ++T+S  G+ K      ++ 
Sbjct: 501 EVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTISHGGYAKTQPLSAYQA 560

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG  AT V   + I  L+     N +  ++L S KG +      EI  ASRA +G
Sbjct: 561 QRRGGKGKSATGVKDEDYIEHLLVA---NSHATLLLFSSKGKVYWKKTYEIPEASRAARG 617

Query: 880 ---VVIFSTAKDERVVSVERIR------ESEIVDEAESTE 910
              V +    + ER+ ++ +I        ++  +E E  +
Sbjct: 618 RPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELEDGD 657


>gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
 gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
          Length = 882

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/906 (42%), Positives = 558/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R ++H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRALTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM R+W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + S+ + SDG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLSRAETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL S+K E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ++MVVT+SH GYVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +INI  L +GE+IT ++P  E  +   + +V   
Sbjct: 602 FSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMG 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L  G  VI++ +                               
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQNVIALLVAGD---------------------------- 749

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 750 ------------------------EQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 14/242 (5%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +  V   + LG VK+ PL  +    R  KG   V + D D++    I      V+ FS  
Sbjct: 652 DKFVFMGTALGTVKKTPLEAFGRVLR--KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDS 709

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G   +     +     +ARG   +  + L  G+ +  ++   +++ S     V+ AT++G
Sbjct: 710 GKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGDEQQS-----VLTATENG 761

Query: 656 NVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R  + ++ +  R   G IA++      ++++     QE  I+L T  G  +R  +S 
Sbjct: 762 FGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTRVSE 821

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR    R + GV  ISL +G ++  +  V  A+A+ D                +G  E  
Sbjct: 822 IREMG-RATQGVTLISLDEGTKLSGLQQVAEAEAEGDAESDAEGPAEGNNAGDNGGEEGG 880

Query: 773 TS 774
            +
Sbjct: 881 AA 882


>gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175]
 gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175]
          Length = 916

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/926 (43%), Positives = 566/926 (61%), Gaps = 88/926 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL+ + DE    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R    R + GVRGI L +G +V+S+ +                         
Sbjct: 723 TGEEVLSLRPMG-RTATGVRGIRLEEGQKVVSLIVP------------------------ 757

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            GD   +T  +N       +SE                                 +R+ K
Sbjct: 758 KGDGAILTVTENGYGKRTQLSEY-----------------------------PAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910
           A DE+VV ++RI E     DE E  E
Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872


>gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185]
 gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223]
 gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185]
 gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223]
          Length = 916

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/926 (43%), Positives = 566/926 (61%), Gaps = 88/926 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL+ + DE    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R    R + GVRGI L +G +V+S+ +                         
Sbjct: 723 TGEEVLSLRPMG-RTATGVRGIRLEEGQKVVSLIVP------------------------ 757

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            GD   +T  +N       +SE                                 +R+ K
Sbjct: 758 KGDGAILTVTENGYGKRTQLSEY-----------------------------PAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910
           A DE+VV ++RI E     DE E  E
Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872


>gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1]
 gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1]
          Length = 919

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    RN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 15/256 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D  +         +   +  G VK+ PL  +   R    G   + +++ D +    I  
Sbjct: 676 GDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRS--NGLIALKLKEGDTLIAAAITD 733

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ FS  G V +     +      ARG   +  + L +G+RI +++  PE     +
Sbjct: 734 GAKEVMMFSDAGKVIRFAESVVREMGRNARG---VRGMKLGKGQRIISML-IPE-----S 784

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTK 701
              ++ A++ G  +R  LS F +  R G+  + + ++     ++      +  +I+L + 
Sbjct: 785 GSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISD 844

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +   + RN+ GV  I LA  + ++ +  +     D  + +        +
Sbjct: 845 QGTLVRTRVGEVSSLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVE 903

Query: 762 RRLISGDTEEITSLKN 777
                       + + 
Sbjct: 904 AEAPDEAAGAEEAPQE 919


>gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195]
 gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195]
 gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678]
          Length = 916

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/926 (43%), Positives = 566/926 (61%), Gaps = 88/926 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL+ + +E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELVQILEEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R    R + GVRGI L +G +V+S+ +                         
Sbjct: 723 TGEEVLSLRPMG-RTATGVRGIRLEEGQKVVSLIVP------------------------ 757

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            GD   +T  +N       +SE                                 +R+ K
Sbjct: 758 KGDGAILTVTENGYGKRTQLSEY-----------------------------PAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910
           A DE+VV ++RI E     DE E  E
Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872


>gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
 gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
          Length = 921

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/944 (42%), Positives = 558/944 (59%), Gaps = 106/944 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    RN+ GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RNARGVRGMKLGKGQQIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V++ ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVHEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDE 890



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 100/256 (39%), Gaps = 17/256 (6%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D  +         +   +  G VK+ PL  +   R    G   + +++ D +    I  
Sbjct: 676 GDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRS--NGLIALKLKEGDTLIAAAITD 733

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ FS  G V +     +      ARG   +  + L +G++I +++  PE     +
Sbjct: 734 GAKEVMMFSDAGKVIRFAESVVREMGRNARG---VRGMKLGKGQQIISML-IPE-----S 784

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTK 701
              ++ A++ G  +R  LS F +  R G+  + + ++     ++      +  +I+L + 
Sbjct: 785 GAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVHEGEEIMLISD 844

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +   + RN+ GV  I LA  + ++ +  +   +   DE    ++     
Sbjct: 845 QGTLVRTRVGEVSSLS-RNTQGVTLIKLAADETLVGLERI--QEPSEDELDDMVEAGEEG 901

Query: 762 RRLISGDTEEITSLKN 777
                 D +E    + 
Sbjct: 902 VEAEVPDNDEAAGAEE 917


>gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
 gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
          Length = 886

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/907 (43%), Positives = 558/907 (61%), Gaps = 69/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+IDNP+I +D LME I GPDFPTGA+I GR GI  AY TGRG I +R  
Sbjct: 186 NLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGAIINGRAGILQAYRTGRGRIYVRAQ 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE IV+ EIPYQVNKA ++EKIAELV+EK+I  I+++RDESD+ G RVV+
Sbjct: 246 AEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +V+LN LY  T LQ++F +N+VAL   +P+   L  +L+ FV  R EVV RR
Sbjct: 306 EIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDDQPKLLNLKELLEYFVKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R HVL G A+A+AN+DEV+ +I+ SP P  AR  ++ R W    + + +D
Sbjct: 366 TVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLD 425

Query: 433 LIDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +           + +  DG+ YLS VQ +AIL+LRL RLTG+  D +  E     I+
Sbjct: 426 RAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   L+IL +  RL+ +I++EL  + ++    RRT I + + D+  ED I  ED VVT+S
Sbjct: 486 IAGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQRRGG G++   ++DEDFV  L I +TH  +L F+S+G V+  KV
Sbjct: 546 HGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKVFWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P+   Q+RG+ ++N+L L +GERIT+I+P  E +   ++ ++  AT  G V++  LS
Sbjct: 606 YQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFD---DDHFIFMATADGTVKKTPLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G  A+ L   D ++         DI+L T  G+  RF    +R    R S G
Sbjct: 663 QFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSMG-RVSRG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ +A    VI+M +                                           
Sbjct: 722 VRGVRMADDVSVIAMVV------------------------------------------- 738

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +   +LTVSE GFGKRT   ++    R  +G+ A  +S+ N  G LV 
Sbjct: 739 ----------PEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSERN--GCLVG 786

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V + D+I+L+S++GTL+R   +E+ ++ R T+GV +    + E +V +ERI E  + 
Sbjct: 787 ATQVFEGDEIMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEGEHIVGLERIDEPPVP 846

Query: 904 DEAESTE 910
           +  E  E
Sbjct: 847 EAVEGGE 853


>gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ]
 gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ]
          Length = 906

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/899 (50%), Positives = 636/899 (70%), Gaps = 8/899 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + +K Y K
Sbjct: 3   DGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGSVDGDPPA+ RYTE 
Sbjct: 63  AARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYD + QEPVVL A +PNVLVNG GG+AVGM+TNIP+H
Sbjct: 123 RLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPSH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++D  V  IDNP++ L+ LM +I GPDFPTG VI+G  GIK+A+ATGRG+I+I+G 
Sbjct: 183 NLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQGK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE+    R+ I++ EIPYQ NKA ++E+I ELV+EK+I  ++DLRDES++ G RV IE
Sbjct: 243 THIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  ++ V+LNQL   T L++ FS+N + L+  +P   +LI I++ FVAFR+EV+VRRT
Sbjct: 303 LKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEVLVRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLID 432
           +Y L K R+RAH+ +G+ IAV N+DE+V IIR S +   A   L +R+W  + +++ +I+
Sbjct: 363 RYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVRGMIE 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ DS+  +   G   L+  Q +AILE+RL RLTGL +  +  EL S+   I E   ILS
Sbjct: 423 LVSDST-GVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTKILS 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + S L+ ++++ LL VK  + TPRRT I E   D++ E  I RE+MVVTV+  G+VKRV 
Sbjct: 482 TDSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDAESLIPREEMVVTVTMNGFVKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPA 601

Query: 613 ARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +RG++L+NI  L +GE IT++MP P+   +    ++ VVFAT  GN+RRN L+DF  +  
Sbjct: 602 SRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALADFQYVPS 661

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIAM L   D+++S   C   + +LL++++G+ +RF +  +R F GR S GVR I LA
Sbjct: 662 NGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKLA 721

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQR-RLISGDTEEITSLKNDSSVEGNISEER 789
           +GDQVISM+++  ++A  + R  Y+K     R +    D E I    +       +SEE 
Sbjct: 722 EGDQVISMSVLHGSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVSGMLEGLQLSEET 781

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  KEQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA F V  
Sbjct: 782 FVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARN--GKVVASFSVAH 839

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAE 907
            DQ++L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV  + +S +  D+ E
Sbjct: 840 TDQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKGEKVVSVALVIDSGDNCDDDE 898


>gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY]
 gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY]
          Length = 877

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 549/912 (60%), Gaps = 77/912 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  PD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  ++K F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIKVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +   G   LS+ Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDIL+  +R+  II +EL +++ E        RR+ I     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P      +   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    R + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPLG-RQARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846

Query: 888 DERVVSVERIRE 899
             ++  ++RI E
Sbjct: 847 GAKLSGLQRIVE 858


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/898 (41%), Positives = 556/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E  +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDEEEE 814


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/896 (41%), Positives = 555/896 (61%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+
Sbjct: 1   MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR
Sbjct: 241 GSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  +
Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R     
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q +AIL++RL RLTGL R+ I  E   L   I 
Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSH 544
           E   IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H
Sbjct: 455 ELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS 
Sbjct: 575 EIPEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGVSKRTPLSS 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV
Sbjct: 632 FANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L   DQV+ M IV                                           
Sbjct: 691 KAITLGDEDQVVGMEIVEE----------------------------------------- 709

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV
Sbjct: 710 ------------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V   + I+L++  G +IR+PV++I    R T+GV +    +D+ V +V + ++ 
Sbjct: 756 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 811


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/894 (42%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGVSKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +    +D+ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 810


>gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440]
 gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440]
          Length = 923

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R    RN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREMG-RNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 98/256 (38%), Gaps = 15/256 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D  +         +   +  G VK+ PL  +   R    G   + +++ D +    I  
Sbjct: 676 GDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRS--NGLIALKLKEGDTLIAAAITD 733

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ FS  G V +     +      ARG   +  + L +G+RI +++  PE     +
Sbjct: 734 GAKEVMMFSDAGKVIRFAESVVREMGRNARG---VRGMKLGKGQRIISML-IPE-----S 784

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTK 701
              ++ A++ G  +R  LS F +  R G+  + + ++     ++      +  +I+L + 
Sbjct: 785 GSQILTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISD 844

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +   + RN+ GV  I LA  + ++ +  +     D  + +        +
Sbjct: 845 QGTLVRTRVGEVSSLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIETDEEGVE 903

Query: 762 RRLISGDTEEITSLKN 777
                 + EE      
Sbjct: 904 AVAPDNENEEAAGADE 919


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/895 (41%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/895 (41%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/895 (41%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901]
 gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901]
          Length = 856

 Score =  818 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/909 (44%), Positives = 554/909 (60%), Gaps = 71/909 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK +H LL DL K+TVDF PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+ +I+NP   +D L+E I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGIINGRAGILMAYRTGRGRIYVRAK 245

Query: 254 SH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +  +     +R+ I++ EIPYQVNKA ++EKIAELV++K+I  I+++RDESD+ G RVVI
Sbjct: 246 AEVVTDEKTNRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   DV+LN LY  T LQS+F +N+VAL   +P+   L  +L+ F++ R EVV RR
Sbjct: 306 EIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDDQPKVLNLKQMLEHFISHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R HVL GLA+A+AN+DEV+ +I+ S  P  AR  L+ R W  + I   ++
Sbjct: 366 TVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTISQFLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD     G  DG  +LS  Q +AILELRL RLTG+  D +  E      +I
Sbjct: 426 RAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEKLQQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+ILS+  RL+ +I++EL +V  E    RRT I     D+  ED I  ED VVT+SH
Sbjct: 486 SEYLEILSNAVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTVEDLINEEDRVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL  Y+AQRRGG G++   ++DEDFV  L I +TH  +L F++ G V+  KV+
Sbjct: 546 GGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCFTNAGKVFWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+   Q+RG+ ++N+L L +GERIT+I+P  E +    + ++V AT  G V++  LS 
Sbjct: 606 QIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDE---DRFIVMATSQGTVKKTPLSQ 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G  A+ L   D ++       + DI+L +  G+  RF    +R    R S GV
Sbjct: 663 FARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRSMG-RTSRGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI +A   +VI+M I                                            
Sbjct: 722 RGIRMADEHRVIAMVI-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LTVSE G+GKRT   DF    R  +G+ A  VS+ N  G LV  
Sbjct: 738 ---------PADGGKVLTVSENGYGKRTDVDDFPTKGRGSQGVIAMQVSERN--GGLVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SE 901
             + D D+++++SD+GTL+R   +E+ + SR T+GV +    + E +V V RI E    +
Sbjct: 787 VQIFDGDELMMISDQGTLVRTRGDEVSLLSRNTQGVRLIKVRESEHIVGVARIAEQLDQD 846

Query: 902 IVDEAESTE 910
             DE ES E
Sbjct: 847 ADDETESNE 855


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/892 (43%), Positives = 560/892 (62%), Gaps = 85/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V + +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  +K + K 
Sbjct: 6   KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+GK+HPHG+ A+YDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R
Sbjct: 66  AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ K+TVDF PNYD S +EPVVL +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DG V +ID+P++++  LM+II+GPDFPTG  I+GR GI+ AY TGRG+I +R V+
Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             EK SG +  I+VTE+PYQVNKA ++EKIAELVR+K+I  IADLRDESDR+G R+VIEL
Sbjct: 246 TFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+  V+LNQL+++T LQ  F + M+AL   +P    L  IL  ++  +++VV RRT+
Sbjct: 306 KRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTRRTR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR  LM R              
Sbjct: 366 YDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSR-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLT L R+ I  E   L  +I+    IL+  
Sbjct: 412 ------------FGLTEKQAQAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             LLG+I+QELL +K++    RRT+I       ++ED I  EDMV+T++H GY+KR+P+ 
Sbjct: 460 RVLLGVIRQELLEIKEKYGDARRTQITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVD 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ QRRGG+G + +  ++EDFV  LF+ STH  +LFF++ G VY+ KV  +P    QA+
Sbjct: 520 TYKNQRRGGRGVTAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAK 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L ++Q ERIT I+P  E     ++ Y+   TK+G V++  LS++    R G I
Sbjct: 580 GTPIVNLLYVDQDERITAIIPVKE---FTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGII 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+  D+++ V+  T + ++++ TK G  +RF  + +R    R + GV+GI+L+ GD+
Sbjct: 637 ALSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPMG-RTARGVKGITLSPGDE 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI + +V                                                     
Sbjct: 696 VIGLEVVDE--------------------------------------------------- 704

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +  +LTV+ KGFGK+T   ++R+  R GKGI    V++ N  G +V +  V   D+++
Sbjct: 705 --QAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKN--GEVVGIVAVRPEDEVM 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +S +G +IRV   EI    RAT+GV +    KD+++ +V +I   E  +  
Sbjct: 761 AISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQEDEEND 812


>gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
 gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/922 (42%), Positives = 552/922 (59%), Gaps = 77/922 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ V+ +PD  +D +MEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  Y +G DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II  EL ++K E        RRT +     D+ 
Sbjct: 482 IVAEYKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D  +   + +
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKGVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    R + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPLG-RAARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+  D+I+L++DKG L+R  V EIR   RAT+GV + +  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDE 846

Query: 888 DERVVSVERIRESEIVDEAEST 909
             ++  ++RI E++    A  T
Sbjct: 847 GAKLSGLQRIVENDANPPAADT 868


>gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 884

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/923 (42%), Positives = 552/923 (59%), Gaps = 77/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ V+ +PD  +D +MEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  Y +G DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDILS   R+  II  EL ++K E        RRT +     D+ 
Sbjct: 482 IVAEYKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D  +   + +
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    R + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPLG-RAARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+  D+I+L++DKG L+R  V EIR   RAT+GV + +  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDE 846

Query: 888 DERVVSVERIRESEIVDEAESTE 910
             ++  ++RI E++    A   +
Sbjct: 847 GAKLSGLQRIVENDANPPAADDD 869


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 554/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VKD  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKDRFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 556/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  ++ I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/904 (42%), Positives = 559/904 (61%), Gaps = 88/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHKPQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ V+
Sbjct: 303 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL +A+ +LDEV+ +IR S   E A+  L+++         
Sbjct: 363 RRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  VK+  +  RRT IV  GL  +EDED I RE++VVT++H GY+
Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDERRTEIVTSGLETIEDEDLITRENIVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPSSTYRSQKRGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +   +  Y+ F TKHG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVGEFD---DESYLFFTTKHGISKRTPLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V        I++ TK G  +RFP + +R    R + GV+GI+
Sbjct: 634 RNNGLIALSLRDEDELIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQMG-RTAAGVKGIN 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+EKG+GK T + ++R+ +R GKG++   +++ N  G+LV V    
Sbjct: 708 --------DSHVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENN--GSLVTVKATT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906
             + +++++  G +IR+ + +I    R T+GV +    + E V +V  + + E  D  E 
Sbjct: 758 GEEDLMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEENDSEEQ 817

Query: 907 ESTE 910
           E+ E
Sbjct: 818 EADE 821


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/897 (41%), Positives = 556/897 (61%), Gaps = 86/897 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+
Sbjct: 1   MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR
Sbjct: 241 GSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  +
Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R     
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q +AIL++RL RLTGL R+ I  E   L   I 
Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSH 544
           E   IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H
Sbjct: 455 ELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS 
Sbjct: 575 EIPEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSS 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV
Sbjct: 632 FANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L + DQV+ M IV                                           
Sbjct: 691 KAITLGEEDQVVGMEIVEE----------------------------------------- 709

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV
Sbjct: 710 ------------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 756 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 812


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum]
          Length = 907

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/898 (44%), Positives = 562/898 (62%), Gaps = 42/898 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+   P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGLPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+ VT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDARRTEITAATHDIDMEELIAREDVAVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH  +L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E     ++ ++  AT  G V++  LS F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVTE---FSDDKFIFMATGDGTVKKTSLSSF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+     ++I+L +K G+ VRF  S        N   V 
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVLDENGQPV- 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                       +      +  +       +  S  R +   + +++ SL          
Sbjct: 722 ------------LDEHGQPEIKFKGVRAMGRTASGVRGMKLAEGDQVVSLI--------- 760

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +   +  ILTV++ G+GKRT+  ++    R+ +G+ +  VS+ N  G +    
Sbjct: 761 -------VPSNDGDILTVTQNGYGKRTTLGEYPTKGRATQGVVSIKVSERN--GQVAGAV 811

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              + D+ ++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E E V
Sbjct: 812 QTEEGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRIEEIEDV 869



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 73/458 (15%), Positives = 163/458 (35%), Gaps = 52/458 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R +     ARR  
Sbjct: 462 LHRLTGLEHEKILDEYKALLEEIAELMHILASTERLMEVIREELETVRDA--FGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D       +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAATHDIDMEELIARED----VAVTLSHAGYVKYQILSDYEAQRRGGKGKSATKMKEED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +       IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDHILCFSTRGKTYRLKVYQLPLASR--TARGKPIVNILPLEEGERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  LS + A  R   G   V +R++D +  + I   ++
Sbjct: 634 LPVTEFSDDKFIFMATGDGTVKKTSLSSF-ANVRS-NGLIAVNLREDDSLIGVDITDGNS 691

Query: 588 SVLFFSSLGFVYK-----------------EKVWRLPIGSPQ---ARGKALINI--LSLN 625
            ++ FS  G V +                       P    +   A G+    +  + L 
Sbjct: 692 EIMLFSKFGKVVRFKESEETPVLDENGQPVLDEHGQPEIKFKGVRAMGRTASGVRGMKLA 751

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
           +G+++ +++         N+  ++  T++G  +R  L ++    R+  G +++K+     
Sbjct: 752 EGDQVVSLIV------PSNDGDILTVTQNGYGKRTTLGEYPTKGRATQGVVSIKVSERNG 805

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           ++       + ++ ++ T  G  VR  ++ +     RN+ GV  I  A+ + V+ +  + 
Sbjct: 806 QVAGAVQTEEGDEFMMITDAGTLVRTRVAEVSQVG-RNTQGVTLIRTAEDENVVGLQRIE 864

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             +         +    A   ++   ++   +    SS
Sbjct: 865 EIEDVELPEGEELPEGEASVAILEVQSDAEETDSEPSS 902


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  816 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKDD 811


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  816 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  816 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/900 (42%), Positives = 552/900 (61%), Gaps = 83/900 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE   +GI  V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R  LI+G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  LL D+ K+TVDF PNYD   +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG V +ID+PD  LD LM +I+GPDFPTG VILGR GI+ AY TGRGS
Sbjct: 182 TNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I  I DLRDESDR+G
Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R     V+LN L+++T+LQ+ F V  +AL   +P+  TL   L+ ++  + +
Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR+ L+         
Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    L G+I+QE+L +K+     RRTRIV    ++ +ED I   D+V+ ++H GY
Sbjct: 456 KAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+PLS Y +QRRGG+G + +   +EDFVT L + STH  +LFF++ G +Y  K + +P
Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               QARG  ++N+L++ QGE++T ++P    D +   + Y+ FAT+ G V++  L+++ 
Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G IA+ L   D+++ V+      +I++ T+ G  +RFP + +R    R + GV+G
Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMG-RAATGVKG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL++G                                                      
Sbjct: 695 ISLSEG-----------------------------------------------------D 701

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E    ++   +  +L V+ +G+GKRT   ++R  +R GKGI+  + +  N  G  + +  
Sbjct: 702 EVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKN--GHAIEMCM 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V ++D +++V+  G  IR+ V ++   SR T+GV + +  +   V SV R+ + +  D  
Sbjct: 760 VTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRVVKDDDEDSE 819


>gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
 gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
          Length = 885

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/915 (42%), Positives = 551/915 (60%), Gaps = 77/915 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHMLRNPETSIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLIVVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +G DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL S+K E        RR+ I     D+ 
Sbjct: 482 IVAEYKEVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGARRSIIEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   D  S   + +
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V   T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    R + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPLG-RAARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIALDE 846

Query: 888 DERVVSVERIRESEI 902
             ++  ++RI E++ 
Sbjct: 847 GSKLSGLQRIVENDA 861


>gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110]
 gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110]
          Length = 881

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/916 (42%), Positives = 556/916 (60%), Gaps = 77/916 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP   +D LMEI+  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVRDGYRTGRGKVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIEVFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++ 
Sbjct: 366 TVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425

Query: 433 LID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                              +  + +GSDG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RSRADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDC 532
              +  EI + LDIL+   R+  II +EL ++K E        RR+ +     D+  ED 
Sbjct: 486 YKEVMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGARRSLVEHSAYDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PL+ YRAQ+RGG+G+   V +++D++  LFI +TH  +L F
Sbjct: 546 ITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I   +    E  +   + YV  A
Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFMA 665

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF   
Sbjct: 666 TSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDEE 725

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    RN+ GVRG+SL  G  VI+M +                               
Sbjct: 726 DVRPLG-RNARGVRGMSLDPGQGVIAMLVAEDE--------------------------- 757

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                    +Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 758 -------------------------QQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 792

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+ +D+I+L++DKG L+R  V EIR   RAT+GV +    +  ++
Sbjct: 793 QSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKL 850

Query: 892 VSVERIRESEIVDEAE 907
             ++RI E++   E+E
Sbjct: 851 SGLQRIVENDANGESE 866


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 555/895 (62%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/893 (41%), Positives = 553/893 (61%), Gaps = 86/893 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQK 809


>gi|118578454|ref|YP_899704.1| DNA gyrase, A subunit [Pelobacter propionicus DSM 2379]
 gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
          Length = 843

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/898 (42%), Positives = 562/898 (62%), Gaps = 61/898 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +   +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  M  +WNK Y K
Sbjct: 6   QNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A YD + RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL++ +H LL DL K+TV   PNY+    EP VL +++PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG +AVI+NPD+  + L+ +I GPDFPTGA I GR GI++AY TGRG I IR  
Sbjct: 186 NLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGATIYGRQGIRDAYTTGRGIIQIRAK 245

Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +HIE     +R+ I+VTE+PYQVNKA ++EKIAELV+EK+I  IA++RDESDR+G R+V+
Sbjct: 246 AHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR  + +V+LN LY+ T +Q+ F + ++A+   +P   +L  ++  F+  R EVV RR
Sbjct: 306 EVKRDDNPEVLLNLLYKLTQMQTSFGIILLAIVHNRPRILSLREMIDCFIEHRAEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA  RAH+L GL IA+  LD V+ +IR S  P  A++ LM+ ++  ++    ++
Sbjct: 366 TNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLARLE 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L     Y  G      LSE+Q +AILE+RL RLTGL RD I +E   +   I    +IL+
Sbjct: 426 LPRPVGYDDGVH----LSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILA 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +  II  EL  ++D+    RR+ I +   D+  ED I+ E+MVVT+SH GY+KR  
Sbjct: 482 SDREIFNIIISELTEIRDKFGDIRRSEISDTTPDISLEDTIMDEEMVVTISHTGYIKRSA 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + +YR+QRRGGKG++G+  R+EDFV  LFI ST   +L F+  G +Y  KV+ +P G+  
Sbjct: 542 VDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVYEIPEGNRT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GKA++N++++   E+ITTI+P  E      + ++  AT++G V++  L ++  +   G
Sbjct: 602 TKGKAVVNLVNVGMEEKITTILPVKE---FSEHTFLFMATRNGVVKKTPLIEYSNVRSGG 658

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  D+++ V       D+ L ++ G+ +RF    +R    R + GVRG++L + 
Sbjct: 659 IIAVNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSMG-RVTRGVRGMNLNED 717

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI M IV +                                                 
Sbjct: 718 DHVIGMEIVHND------------------------------------------------ 729

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             +    I TV E G+GKRT   ++R  +R GKGI     +  N  G++V V  V++++ 
Sbjct: 730 --VVGSTIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN--GSVVNVMQVSNDND 785

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++D G ++RVPV+   +  R T+GV + +T + E+VV+V R+ E E  DE E TE
Sbjct: 786 LMVITDNGKILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVARLAEKEEDDENEGTE 843


>gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
 gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
          Length = 902

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/896 (50%), Positives = 635/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + DS+  +   G   L+  Q +AILE+RL RLTGL ++ +  EL S+   I E   ILS+
Sbjct: 424 VSDST-GVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP P  +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHAIEREQFL 781

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 55/272 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTT 700
                VV  T +G V+R KLS++    R GK  +A  +   D    +        +L  +
Sbjct: 523 PKEEMVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFS 582

Query: 701 KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +G+  +  +  + +   + R    V    L+ G+ + S+  +   D             
Sbjct: 583 NVGKVYKLKVYKLPLGEPSSRGRSLVNIFPLSDGETITSVMPLPSCD------------- 629

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E+ +    ++  +  G  +R +  DF+
Sbjct: 630 --------------------------------DEVGIANLDVVFATASGNIRRNALSDFQ 657

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRAT 877
               SGK   A  ++  ++   L++       D ++L S  G  IR  V+ +R    R +
Sbjct: 658 YVPSSGK--IAMVLTPGDQ---LISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTS 712

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            GV     +  ++V+S+  +   E   E + +
Sbjct: 713 DGVRAIRLSAGDQVISMSVLHGIEASSELKES 744


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/906 (45%), Positives = 567/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 -------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G       LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R    R + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V  +                           +T+ +N      +
Sbjct: 722 RGIRVEKDQAVKSLVVVDPSGGTI-----------------------LTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E                             +R+S R G+G+ +  V++ N  G +V  
Sbjct: 759 IDE-----------------------------YRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
 gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
          Length = 915

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/934 (43%), Positives = 573/934 (61%), Gaps = 85/934 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD         ++I DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G EW
Sbjct: 4   SDTTPTAERLPINIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELGNEW 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R LL++GQGNFGSVDGD  AA
Sbjct: 64  NRSYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDSAAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + A  LL D+ K+TV F PNYDGS +EP VL A+YPN+LVNG  GIAVGMA
Sbjct: 124 MRYTEVRMTRLASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAVGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+D   A+ID+P++D  ALM+ I GPDFPTG  I G+ GI + Y TGRGS
Sbjct: 184 TNIPPHNLGEVIDATCALIDDPELDPRALMQYIPGPDFPTGGSIHGQAGIVSGYETGRGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           ++IR  + IE     +E I+V E+PYQVNKA ++E+IAELVREK++  I+DLRDESDR+G
Sbjct: 244 VIIRAKTVIETRKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDESDREG 303

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIE+KR   ADV+LNQL+++T++QS F +N +AL   +P   +L   L AF+  R E
Sbjct: 304 MRVVIEIKRDHQADVVLNQLFKHTAMQSSFGINALALVDGRPVTLSLKAFLVAFLKHRRE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA+ RAH+L GLA+A+AN+D ++ +IR +     A+  LM   W    +
Sbjct: 364 VVTRRTIFELNKAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERWERGPV 423

Query: 428 KDLIDLI---DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           + ++      +D       +G   LS  Q +AIL++RL RLTGL  + I  E   +  EI
Sbjct: 424 EAMLARALGENDVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEEILKEI 483

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
                IL+S   L+ +I+QELL +K+    PRRT IVE + D    D I  E+MVVTVSH
Sbjct: 484 AYLKGILASDGVLMDVIRQELLEIKERYANPRRTLIVEAVGDFSIADLIPEEEMVVTVSH 543

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR P   Y+AQRRGGKG+S   ++DEDFV  +F+ STH ++  F+  G V+K KV+
Sbjct: 544 GGYIKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGRVFKLKVY 603

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P GS  +RGKA++N+L L +GE++  I+P P  E+ W +  ++FAT+ G +++  LS+
Sbjct: 604 EIPSGSRLSRGKAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFATRRGLIKKTVLSN 663

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCT------------------QEN---------DIL 697
           +  I  +G  A+ L   D+++ V                       E+          I+
Sbjct: 664 YANIRTTGIRAINLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPEDESSADAAPGRIM 723

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L  + G+ VRF         GR S GVRG+ L   D VI++ ++                
Sbjct: 724 LFAQGGKAVRF-ADEKVRRVGRVSQGVRGMRLKGEDGVIALTVI---------------- 766

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                               D    G                +LT++EKG+GKR+    +
Sbjct: 767 --------------------DGEAVGQ---------------LLTITEKGYGKRSDLSQY 791

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R  +G+   DV   ++ G +V+   V++ D++++++D+GT++R  V+ IR+A RAT
Sbjct: 792 PTKGRGTQGVIGMDV--RDKTGNVVSALVVDEQDEVMVITDQGTVLRTKVDSIRVAGRAT 849

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDE-AESTE 910
            GV + + A+ ERVVSV R+ E+E VD   E  E
Sbjct: 850 MGVRVLNVAEGERVVSVARLAEAEEVDAFDEEGE 883


>gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 851

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI++ +                                              
Sbjct: 717 MQLEDGQQVIALLVA--------------------------------------------- 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 732 -------GSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/893 (41%), Positives = 553/893 (61%), Gaps = 86/893 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQK 809


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/916 (41%), Positives = 550/916 (60%), Gaps = 76/916 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L DL K+TVDF PNYDGS +EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  ++ LMEII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAGIIYGINGVREGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKVHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALIDGQPKLCNLKQLLEIFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+DE +  I+ SP P  A+  LM +SW++S ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSVVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  + + +DG   LS+ Q   IL++RL RLTGL +D I
Sbjct: 422 EMLTRAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
             E   +  +I + LDIL+  +R+  II  EL +V+ E        RR+ +   + ++  
Sbjct: 482 VGEYKDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQELGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PL+ YRAQ+RGG+G+     +D+D+V +LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWM 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G VY  KVW +P G   +RGK ++N+  L   E+I  ++P    + S   + Y+
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T  G V++  L DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R    R + GVRG++L +G  VI+M +                            
Sbjct: 722 DEEDVRPLG-RQARGVRGMALDEGQSVIAMLVAED------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      + Q +LT +E G+GKRTS  ++    R  KG+ 
Sbjct: 756 ---------------------------ETQSVLTATENGYGKRTSILEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   ++ N  G +VA   V  ND+I+L++D+G L+R  V EIR   RAT+GV + +  + 
Sbjct: 789 AIQQTERN--GKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALDEG 846

Query: 889 ERVVSVERIRESEIVD 904
            ++  ++RI E++  +
Sbjct: 847 AKLSGLQRIVENDANE 862


>gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
 gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
          Length = 924

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/922 (41%), Positives = 555/922 (60%), Gaps = 29/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E    +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLIT---FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V EIR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E  DE    E
Sbjct: 885 ETLVSLERVAE-EAEDENPEVE 905



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 115/289 (39%), Gaps = 42/289 (14%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D +    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRS--QGIKAIALKEGDHLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----RLPIGSPQARGKALINILS-------------- 623
             S    ++ FS+LG   +   +                 + + L               
Sbjct: 698 QTSGSDDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGK 757

Query: 624 -----------------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                            L    +I +++ F   E++ ++L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-EAAQSDLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G+ +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGKLIRTKVEEIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           VR I+L +G+ ++S+  V     D +  +   +   A+  +   +  E 
Sbjct: 876 VRLINLDEGETLVSLERVAEEAEDENPEVENPEGNEAENAVSDTEGGEA 924


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 555/894 (62%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL+ VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELIEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/906 (45%), Positives = 567/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 14  KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKPYKK 73

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 74  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 134 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 194 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 253

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 254 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 313

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 314 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 373

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 374 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 433

Query: 433 -------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G   +   LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 434 KAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 493

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 494 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 553

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 554 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 613

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 614 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 670

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R    R + GV
Sbjct: 671 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG-RTARGV 729

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V  +                           +T+ +N      +
Sbjct: 730 RGIRVEKDQAVKSLVVVDPSGGTI-----------------------LTATENGYGKRTH 766

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E                             +R+S R G+G+ +  V++ N  G +V  
Sbjct: 767 IDE-----------------------------YRVSGRGGQGVISIQVTERN--GKVVRS 795

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 796 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 855

Query: 904 DEAEST 909
           +EAE +
Sbjct: 856 EEAEDS 861


>gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
 gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
          Length = 906

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/933 (42%), Positives = 565/933 (60%), Gaps = 91/933 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    ++ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK 
Sbjct: 3   EFAPDVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P V+  + PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+I+NPD+ +D L+E I GPDFPT  +I GR GI + Y TGRG + I
Sbjct: 183 PPHNLGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGIINGRKGIIDGYKTGRGKLKI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V E+PYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R
Sbjct: 243 RAKARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KRG   +VILN LY  T +QS F +NMVAL+  +P+   L  +L AF+  R EVV
Sbjct: 303 MVIEVKRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQPKLLNLKEMLHAFILHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR RAH+L GLAI++AN++ ++ +IR S  P  A+  L  + W   ++  
Sbjct: 363 TRRTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAA 422

Query: 430 LID-------LIDDSSYTIGSDGTMYL-SEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++         D  +   G    +Y  ++ Q +AIL++RL +LTGL  + I NE   L 
Sbjct: 423 MLEASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I   L IL +  RL+ +I +EL  V+      RRT I     D+  ED I  ED+VVT
Sbjct: 483 EIITALLFILENPHRLMEVITEELNDVRANFADARRTEITASETDLCMEDLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + STH ++L FS+ G +Y  
Sbjct: 543 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTRGRLYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S QARG+ +INIL L QGERIT I+P    +   ++ +V  AT +G V++  
Sbjct: 603 KVFQLPLASRQARGRPIINILPLEQGERITAILPVRTYD---DDKFVFMATANGTVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF----- 716
           LS + +   SG IA+ L+  +E++       EN+I++ +  G+ VRF  +   +      
Sbjct: 660 LSAYSRPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVDEQG 719

Query: 717 -------------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
                               GR + GVRGI L +G++ +S+ +                 
Sbjct: 720 NPVLDENGVQEIKFKGVRPMGRTATGVRGIKLKEGEKAVSLIV----------------- 762

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     ILT +E G+GKRT   D+
Sbjct: 763 ------------------------------------PNATGHILTCTENGYGKRTPLSDY 786

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +R+ +G+ +  VS+ N  G +V    V++ND+I+L+S++GTL+R PV+ + I  R T
Sbjct: 787 ASKSRATQGVISIKVSERN--GKVVGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRNT 844

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +GV +  T  DE++V+++RI E   +   E  E
Sbjct: 845 QGVTLIRTRDDEKIVALQRIEEVHELPVYEDDE 877



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 105/286 (36%), Gaps = 34/286 (11%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+  LS Y   R    G   + + D++ +    
Sbjct: 629 ERITAILPVRTYDDDKFVFMATANGTVKKTALSAYSRPR--ASGLIAINLNDDNELIGAL 686

Query: 582 IVSTHTSVLFFSSLGFVYKEK--------------------VWRLPIGSPQARGKALINI 621
           I +    ++ FS  G V + K                    V  +     +  G+    +
Sbjct: 687 ITNGENEIMIFSDAGKVVRFKEAEETLVVDEQGNPVLDENGVQEIKFKGVRPMGRTATGV 746

Query: 622 --LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMK 677
             + L +GE+  +++            +++  T++G  +R  LSD+   +R+  G I++K
Sbjct: 747 RGIKLKEGEKAVSLIV------PNATGHILTCTENGYGKRTPLSDYASKSRATQGVISIK 800

Query: 678 LDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +     +++      + ++I+L +  G  VR P+       GRN+ GV  I     ++++
Sbjct: 801 VSERNGKVVGAVQVDENDEIMLISNRGTLVRTPV-HGVSIVGRNTQGVTLIRTRDDEKIV 859

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           ++  +                     +    + +   +  ND ++ 
Sbjct: 860 ALQRIEEVHELPVYEDDETTQNIPVEQKEGAELDPEITESNDETLS 905


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/906 (45%), Positives = 566/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K++  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 -------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G       LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  + +R    R + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V                              +T+ +N      +
Sbjct: 722 RGIRVEKDQAVKSLVVVDPNGGTI-----------------------LTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E                             +R+S R G+G+ +  V++ N  G +V  
Sbjct: 759 IDE-----------------------------YRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 928

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/944 (43%), Positives = 573/944 (60%), Gaps = 104/944 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L++GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +    G IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  V E+    R T+GV +   A DE++V +ER++E   V+  E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889


>gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
          Length = 918

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/921 (41%), Positives = 554/921 (60%), Gaps = 28/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  +S  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEVSDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E +VS+ER+ E E   E    
Sbjct: 885 ETLVSLERVAEDESESELSDA 905


>gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/944 (43%), Positives = 573/944 (60%), Gaps = 104/944 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L++GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +    G IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  V E+    R T+GV +   A DE++V +ER++E   V+  E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889


>gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13]
 gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40]
 gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 928

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/944 (43%), Positives = 573/944 (60%), Gaps = 104/944 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L++GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +    G IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  V E+    R T+GV +   A DE++V +ER++E   V+  E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 102/259 (39%), Gaps = 16/259 (6%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR    G   + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRS--VGLIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++  P
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IP 778

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQEN 694
           E+ S      ++ A++ G  +R  +S+F +  R G   IAM  +     ++         
Sbjct: 779 EEGSQ-----ILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERIC 753
           +I+L +  G  VR  +  +     RN+ GV  I LA  ++++ +  V   ++ + +E   
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSLG-RNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 754 YMKHMSAQRRLISGDTEEI 772
                     +   D +E 
Sbjct: 893 DEVVDGVIVDVDGADADEA 911


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/906 (45%), Positives = 567/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GL IA+AN+DE++ +I+ S  P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 -------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G       LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R    R + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V  +                           +T+ +N      +
Sbjct: 722 RGIRVEKDQAVKSLVVVDPSGGTI-----------------------LTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E                             +R+S R G+G+ +  V++ N  G +V  
Sbjct: 759 IDE-----------------------------YRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/900 (42%), Positives = 549/900 (61%), Gaps = 83/900 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE   +GI  V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R  LI+G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  LL D+ K+TVDF PNYD   +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG V +IDNPD  LD LM +I+GPDFPTG VILGR GI+ AY TGRGS
Sbjct: 182 TNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I  I DLRDESDR+G
Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R     V+LN L+++T+LQ+ F V  +AL   +P+  TL   L+ ++  + +
Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR+ L+         
Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    L  +I+QE+L +K+     RRTRIV    ++ +ED I   D+V+ ++H GY
Sbjct: 456 KAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+PLS Y +QRRGG+G + +   +EDFVT L + STH  +LFF++ G +Y  K + +P
Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               QARG  ++N+L++ QGE++T ++P    D +   + Y+ FAT+ G V++  L+++ 
Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G IA+ L   D+++ V+      +I++ T+ G  +RFP + +R    R + GV+G
Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPMG-RAATGVKG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL++G                                                      
Sbjct: 695 ISLSEG-----------------------------------------------------D 701

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E    ++   +  +L V+ +G+GKRT   ++R  +R GKGI+  + +  N  G  + +  
Sbjct: 702 EVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKN--GHAIEMCM 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   D I++V+  G  IR+ V ++   SR T+GV + +  +   V SV R+ + +  D  
Sbjct: 760 VTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRVVKDDDEDSE 819


>gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
          Length = 921

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/922 (40%), Positives = 554/922 (60%), Gaps = 28/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E    +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLIT---FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E++VS+ER+ E      A   E
Sbjct: 885 EQLVSLERVAEEPEDASASGEE 906


>gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594]
 gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594]
          Length = 931

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/900 (49%), Positives = 598/900 (66%), Gaps = 34/900 (3%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    + Y K A+
Sbjct: 5   ERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAK 64

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ RYTE RL 
Sbjct: 65  IVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLA 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A+ LLDDL KDTVDF  NYDGS +EP VL AR+PN+LVNG GGIAVGMATN+P HNLG
Sbjct: 125 KVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLG 184

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DGC+A I NP I  + LM+ I GPDFPT  +ILG+ G + AY TGRGS+++R    I
Sbjct: 185 EVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARHEI 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+  GDR+ IV T IPYQV K+ ++EKIA+  +EKRI  I+D+RDES R+G RVV++LKR
Sbjct: 245 EEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLKR 304

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            AS +V+LNQ++RYT  Q+ F  NM+A+ G +PE  TL  I++AFV+FREEV+ RRTK+ 
Sbjct: 305 DASPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRTKFE 364

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           LNKAR+RAHVL+GL +AV+NLDEVV +IR S NP+ AR +L  + W   DI   I LI+ 
Sbjct: 365 LNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEA 424

Query: 437 SSYTI-GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              T     GT  LSE Q +AIL+LRL RLT LGRD+I +EL  L  EI+E L IL+ R 
Sbjct: 425 IEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRG 484

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L G+++ EL+ +KDE  TPR + I      +EDED I REDMVVTV+H GY+KR PL+ 
Sbjct: 485 KLFGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTPLAT 544

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGGKGRSG+  +DED V +LF+ STH  VLFF++LG VY+ KVW+LP GSP  +G
Sbjct: 545 FRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEGSPTTKG 604

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L   ER+T ++  PEDE SW  L +VFAT+ G VRRN +  F  +   GK A
Sbjct: 605 RPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYA 664

Query: 676 MKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           M       D ++ VE  +++ +I L +  G+ +RF  +  R    R  +GVRG++L    
Sbjct: 665 MGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDA 724

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SMA++   + D + R  Y++                 ++  ++  E  +  ++  ++
Sbjct: 725 KVVSMAVLDRLEQDMETREAYLR----------------AAIWKNNDAEHTLDSDKVAQM 768

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDND 851
           +  E+FILT++  G+GK +S+Y++R   R G+G+        N    G +VA FPV    
Sbjct: 769 EEGEEFILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGS 828

Query: 852 QIILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVERIR 898
           Q++LV+D+  LIR+P+                 +  R + GV +F  AK E +V    I 
Sbjct: 829 QLMLVTDQAKLIRMPIEFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAIID 888



 Score = 58.0 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 97/320 (30%), Gaps = 58/320 (18%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T ++    D E    +     +V  +  G V+R  +  +     GGK   G V  
Sbjct: 615 DDERVTNVLSLPEDEESWAALN----IVFATEQGMVRRNSMDAFTNVPTGGKYAMGFVEG 670

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG-SPQARGKALINILSLNQGERIT 631
             D +  + ++S    +   S  G   +          S    G   +  ++L    ++ 
Sbjct: 671 TGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIG---VRGMTLKDDAKVV 727

Query: 632 TIMPFPEDESSWN-------------------------------NLYVVFATKHGNVRRN 660
           ++      E                                     +++  T +G  + +
Sbjct: 728 SMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEFILTLTANGYGKIS 787

Query: 661 KLSDFIQINRSGKIAMKLDSRD-------EILSVETCTQENDILLTTKLGQCVRFPIS-- 711
              ++  I R G+    + + D        +++       + ++L T   + +R PI   
Sbjct: 788 SAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQLMLVTDQAKLIRMPIEFR 847

Query: 712 ----------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR S GVR   +AKG+ ++  AI+   +   +E    +      
Sbjct: 848 HMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAIIDETEEPENEAEEAVVEGMVG 907

Query: 762 RRLISGDTEEITSLKNDSSV 781
           R       +      ++   
Sbjct: 908 RGAEETAPDPTMDRDSNEGE 927


>gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
 gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
          Length = 857

 Score =  813 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/900 (43%), Positives = 551/900 (61%), Gaps = 58/900 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+    T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK 
Sbjct: 3   EQTLNKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+++ AH LL+DL K+TVD   NYDGS  EP+VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEQLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A I NP I  + L+ ++ GPDFPTG  I GR GI   Y TGRG + +
Sbjct: 183 PPHNLSEVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIYGREGILQGYRTGRGIVQM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE     +R+ IVVTEIPYQVNKA ++ KIAELVREK++  I+D+RDESDR G R
Sbjct: 243 RARASIETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKR  +  VILN LY+ T +Q+ F +NM+A+   +P+  TL   +  F+  R E+V
Sbjct: 303 IVIDLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPKVLTLQDAIGHFIDHRREIV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L G  IA+  LD V+ +IR S  P  AR  LM   ++  +   
Sbjct: 363 TRRTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQ 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            + L   + ++      + L+EVQ + IL LRL RLTGL RD I  E   +   I    +
Sbjct: 423 KMGLPLPAIHS-QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S + +L II  EL  +K++    RRT IV+   ++  ED IV ED+VVTVSH GY+K
Sbjct: 482 ILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +S YR+QRRGGKG++G+  ++EDFV  LF+ S+   +LFF+  G VY+ KV+ +P G
Sbjct: 542 RTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               RGKA++N+L+L + E+IT I+     +   N   ++ AT+ G V+++ L ++  I 
Sbjct: 602 GRATRGKAIVNLLNLQENEQITAILSVKGFDDERN---ILMATRLGVVKKSPLREYANIR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+ LD  D++++V       D+LL ++ G+ +RF     R    R S GVRG++L
Sbjct: 659 SGGIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPMG-RVSRGVRGMTL 717

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D VI M ++                                                
Sbjct: 718 EDDDVVIGMEVINP---------------------------------------------- 731

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     I TV+E GFGKRT   ++R+ +R GKGI     ++ N  G +V +  V D
Sbjct: 732 ----SATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTD 785

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + ++L++D+G ++R+PV    +  R T+GV + +  ++ER+V+V ++ E +  DE   +
Sbjct: 786 ENDLMLITDQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEGPDS 845


>gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 903

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/906 (43%), Positives = 566/906 (62%), Gaps = 34/906 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M  +G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y L+EVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLISPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ IV    A  +  +               D   I   +ND +  
Sbjct: 719 GVRGIRLTKGEEVVSL-IVAERAAGVESDVEEESVEDVVETTDVADAAVIEVAENDDTA- 776

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 777 ----------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGGTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDAS-- 876

Query: 903 VDEAES 908
           +DE E 
Sbjct: 877 LDEVED 882


>gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA]
 gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA]
 gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400]
          Length = 857

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/890 (43%), Positives = 553/890 (62%), Gaps = 58/890 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+    T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK 
Sbjct: 3   EQSLNKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+AA YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+++ AH LL+DL K+TVD  PNYDGS  EP+VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A I+NP+I  + L+ +I GPDFPTG  I GR GI   Y TGRG + +
Sbjct: 183 PPHNLTEVINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE     +R+ I+VTEIPYQVNKA ++ KIAELVREK++  I+D+RDESDR G R
Sbjct: 243 RARASIETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKR  +  VILN LY+ T +Q+ F +NM+A+   +P   TL   +  F+  R E+V
Sbjct: 303 IVIDLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L G  IA+  LD V+ +IR S  P  A+  LM   ++  +   
Sbjct: 363 TRRTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLR 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            + L   + ++      + L+EVQ + IL LRL RLTGL RD I  E + +   I    +
Sbjct: 423 KMGLPLPAIHS-QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S + +L II  EL  +K++    RRT IV+   ++  ED IV ED+VVTVSH GY+K
Sbjct: 482 ILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +S YR+QRRGGKG++G+  ++EDFV  LF+ S+   +LFF+  G VY+ KV+ +P G
Sbjct: 542 RTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               RGKA++N+L+L + E+IT I+     +   ++  ++ AT+ G V+++ L ++  I 
Sbjct: 602 GRATRGKAIVNLLNLQENEQITAILSV---KGFDDDRNIIMATRLGVVKKSPLREYANIR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+ LD  D++++V       D+LL +K G+ +RF     R    R S GVRG+SL
Sbjct: 659 SGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPMG-RVSRGVRGMSL 717

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D VI M I+                                                
Sbjct: 718 EDDDVVIGMEIINPN--------------------------------------------- 732

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     I TV+E GFGKRT   ++R+ +R GKGI     ++ N  G +V +  V D
Sbjct: 733 -----ATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTD 785

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + ++L++D+G ++R+PV +  +  R T+GV + +  ++ER+V+V ++ E
Sbjct: 786 ENDLMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAE 835


>gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
 gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
          Length = 868

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 553/906 (61%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L  M  +  +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +++R  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L D+ K+TV+F  NYDG+ Q P VL  R P++LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+I+NP+ID+D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAALINGRDGIVDAYRTGRGRIQMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E      +E I+ TEIPYQVNKA ++EKIAELV++K+I  I +LRDESD+ G R+V+
Sbjct: 246 HHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN L+  T LQ++F +N VAL   +P+   L  +L+AFV  R EVV RR
Sbjct: 306 ELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVDGQPKILNLKDMLEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GLA+A+AN+D V+  I+ SP    A+ +L+  +W   D+ ++++
Sbjct: 366 TIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD     G  DG  YLS  Q +AIL++RL +LTGL  D + +E      EI
Sbjct: 426 RAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL S+KDE    R T IVE    +  ED I  EDMVVT+SH
Sbjct: 486 AEYLQILASHERLMEVIREELESIKDEYGDGRLTEIVETRRHLTMEDLIAEEDMVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  P++ Y+AQRRGG+G+S   ++DEDF+  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 GGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ S Q+RG+ ++N+L L Q E ITTI+P  E        Y+  AT  G V++  L+ 
Sbjct: 606 DIPVASRQSRGRPIVNLLPLEQDEWITTILPVREY---TEGHYIFMATSKGTVKKTDLTA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA++L+  D ++  E      D+LL + +G+ VRF  S +R    R + GV
Sbjct: 663 FSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI +    +V+S+                                              
Sbjct: 722 RGIKMQDDQKVVSL---------------------------------------------- 735

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +  +   +LT SE G+GKRT   +F    R  +G+     +  N  G LV  
Sbjct: 736 -------MIPKEGATVLTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRN--GKLVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D ++I+L++++GTL+R  V+E+    R T+GV +    + ER+V +  I + +   
Sbjct: 787 VQVFDGNEIMLITNQGTLVRTRVSEVSTLGRNTQGVTLIRVQEGERLVGIAPIMDEDEDM 846

Query: 905 EAESTE 910
           ++   E
Sbjct: 847 DSVVNE 852



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 97/252 (38%), Gaps = 15/252 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  L+ +   R    G   + + + D +    
Sbjct: 629 EWITTILPVREYTEGHYIFMATSKGTVKKTDLTAFSRPRSS--GLIALELEEGDTLMGAE 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I   +  VL  S +G   +     +      ARG   +  + +   +++ ++M   E   
Sbjct: 687 ITDGNQDVLLMSDVGKAVRFAESNVRAMGRTARG---VRGIKMQDDQKVVSLMIPKE--- 740

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ A++HG  +R  + +F    R   G I M  +    +++        N+I+L
Sbjct: 741 ---GATVLTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRNGKLVGAVQVFDGNEIML 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S +     RN+ GV  I + +G++++ +A ++  D D D  +      
Sbjct: 798 ITNQGTLVRTRVSEVSTLG-RNTQGVTLIRVQEGERLVGIAPIMDEDEDMDSVVNEQTLP 856

Query: 759 SAQRRLISGDTE 770
           +      +   E
Sbjct: 857 AEDDSEEASGEE 868


>gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS]
 gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS]
          Length = 881

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/916 (42%), Positives = 553/916 (60%), Gaps = 77/916 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP   +D LMEI+  PDFPT  +I G  G+K+ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAK 245

Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++ 
Sbjct: 366 TVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425

Query: 433 LID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                              +  + +GSDG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RSRADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDC 532
              +  EI + LDIL+   R+  II  EL ++K E        RR+ +     D+  ED 
Sbjct: 486 YKDVMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGARRSLVEHSAFDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D++  LFI +TH  +L F
Sbjct: 546 ITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I   +    E  +   + YV  +
Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFMS 665

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF   
Sbjct: 666 TSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFAED 725

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    RN+ GVRG+SL  G  VI+M +                               
Sbjct: 726 DVRPLG-RNARGVRGMSLDPGQGVIAMLVAEDE--------------------------- 757

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                    +Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 758 -------------------------QQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 792

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+ +D+I+L++DKG L+R  V EIR   RAT+GV +    +  ++
Sbjct: 793 QSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKL 850

Query: 892 VSVERIRESEIVDEAE 907
             ++RI E++   E+E
Sbjct: 851 SGLQRIVENDANGESE 866


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/906 (43%), Positives = 570/906 (62%), Gaps = 69/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+A+++N ++ +D L+++I GPDFPTG +I GR+GI +AY TGRG I +R  
Sbjct: 186 NLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGGIINGRSGILDAYRTGRGKIYVRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      +E I+VTE+PY VNKA ++EKIAELV++K+I  I  LRDESD+ G RVVI
Sbjct: 246 TEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY +T +Q++F +NMVAL   +P+   L  IL AF+  R EVV RR
Sbjct: 306 ELRRGELTEVMLNNLYTHTQMQNVFGINMVALVNGQPKTLNLKEILAAFIDHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D V+ +I+ S +P  A++ L+ R W    + ++++
Sbjct: 366 TVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             D   +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 RAGGDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL  VK +    RRT I    +++  ED I  ED+VVT+SH
Sbjct: 486 AELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G++   ++DEDFV  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 EGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L++ ERIT I+P    +S  ++ YV FAT  G V++ +LS 
Sbjct: 606 QLPEASRTARGRPIINLLPLDENERITAILPV---KSYDDDKYVFFATGDGTVKKTELSA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   SG  A+ L+  D ++ V      ++I+L +  G+ VRF  S +R    R + GV
Sbjct: 663 YSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L + D+V+S+ +  +  A                         +T+ +N      +
Sbjct: 722 RGMKLGETDKVVSLIVPQNGGA------------------------ILTATENGYGKRTD 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E   +         + V+E                R+GK + A  V + +        
Sbjct: 758 LAEYPVKSRATLGVISIQVTE----------------RNGKVVGAIQVDESD-------- 793

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
                  +I+L+++ GTL+R  V+E+ +  R T GV +  TA+DE++VS+ER+ E E  +
Sbjct: 794 -------EIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVAEPEGDE 846

Query: 905 -EAEST 909
            +AE  
Sbjct: 847 SDAEGD 852


>gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2]
 gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2]
          Length = 920

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/948 (41%), Positives = 564/948 (59%), Gaps = 109/948 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   REVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF  NYDG+ + P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A+ID+  +  D LME I+GPDFPT  +I GR GI  AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      +E I+VTEIPYQVNKA ++EKIAELV++K+I  I +LRDESD++G R+VI
Sbjct: 246 AEIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG +A+V+LN LY+ T ++S+F +N VAL   +P+   L  +L AF+  R EVV RR
Sbjct: 306 ELRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR++AH+L GLA+A++N+D V+ +I+ SP+   A+ +L+ + W   D+  +++
Sbjct: 366 TVYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLE 425

Query: 433 LID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                        D  Y +  DG  +LS  Q +AIL+LRL +LTGL R+ + N+   L  
Sbjct: 426 RAGGENAARPDGLDEQYGL-VDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLE 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L IL +  RL+ +I++EL +V++E    RR+ IV    D   ED I  E +VVT+
Sbjct: 485 QIAELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTL 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ GY K  P+  YRAQ+RGG+G+S   ++D+D+V  L +  TH ++L F++ G V+  +
Sbjct: 545 SNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTNAGKVFWLR 604

Query: 603 VWRLPIGSPQARGKALINILS-LNQGERITTIMPFP------------------------ 637
            + LP G   +RGK ++N+L  L   ERIT I+                           
Sbjct: 605 TFELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGGEEDIVDVDDAADV 664

Query: 638 -EDESSWN---------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
            EDE+  +                 ++  AT  G V+R  L++F +   SG IA+KL   
Sbjct: 665 IEDETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEG 724

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + +++V       DI+L  + G+ VRF  S +RV + R + GVRGI LA+G  VIS+ + 
Sbjct: 725 EHLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDVISLIV- 782

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                                                                 +   IL
Sbjct: 783 ----------------------------------------------------PEENGQIL 790

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           T SE G+GKRT   D+    R G+G+ A  +++ N  G LV    V   + I+L+S++GT
Sbjct: 791 TASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGT 848

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           L+R  VN++  + R T+GV +   A  E +  +  I E E V+E +  
Sbjct: 849 LVRTGVNQVSTSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEDGE 896



 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 21/247 (8%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           V    +   +  G VKR  L+ +   R    G   V +++ + + ++ I   H  ++  +
Sbjct: 686 VPGPFIFMATSSGIVKRTALANFARPRSS--GLIAVKLQEGEHLVNVAITQGHEDIMLVA 743

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +    ++ + S  ARG   +  + L +G  + +++  PE+     N  ++ A++
Sbjct: 744 RNGKAVRFHQSKVRVMSRLARG---VRGIKLAEGVDVISLI-VPEE-----NGQILTASE 794

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           HG  +R  L+D+    R G   IAM ++    E++       E DI+L +  G  VR  +
Sbjct: 795 HGYGKRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGV 854

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRL 764
           + +   +GRN+ GVR I LA G+ +  +A       V   D + DE +       A +  
Sbjct: 855 NQVST-SGRNTQGVRLIRLADGEALCGLATIPELEGVEEEDGEADEVLDGEATPEAPKSD 913

Query: 765 ISGDTEE 771
            S D EE
Sbjct: 914 ASDDAEE 920


>gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2]
 gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2]
          Length = 871

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/913 (42%), Positives = 561/913 (61%), Gaps = 75/913 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  +S+ DEMQ SYL+YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  WNK Y K
Sbjct: 6   REILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS  EP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E V  C+A+IDNP++ +  LME + GPDFPT  +I G  GI+ AY TGRG + +R  
Sbjct: 186 NLNETVSACIALIDNPELTISELMEFLPGPDFPTYGIINGTKGIREAYETGRGRVQMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     +  I+V EIPYQVNKA ++E+IAELV+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 TSVETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V++N LY+ T++Q++F +NMVAL   +P+   L  +L+AF+  R EVV RRT
Sbjct: 306 VKRGEVPEVLINNLYKQTTMQTVFGINMVALINSQPKLLNLKDVLEAFIRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR++AH+L GLA+A+ N+DE++ +I+ SP+P  A+  +++R W+  +++ L++ 
Sbjct: 366 IYDLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLEK 425

Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           ++            +     G   LS  Q +AILE+RL RLTGL +D I  E   L ++I
Sbjct: 426 VEMKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+IL +  RL  ++++EL  V +     RRT I     D++ ED I  E+ +VT+S 
Sbjct: 486 AEFLEILRNPDRLTEVVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVTLSR 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PLS Y+AQRRGG+G+S   M+++D +  + + STH  +L FS+ G +Y +K W
Sbjct: 546 DGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQKTW 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ++GK ++N+L L  GE IT+I+P  E    +   YV  ATK   V+R  LSD
Sbjct: 606 QLPLASRGSKGKPIVNVLPLETGEHITSILPVSEFSEGY---YVFMATKQSTVKRVALSD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L   DE++       E DI+L + +G+ +RF  + +RV   R + GV
Sbjct: 663 FSRPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVMG-RQARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L  G  +ISM +                                            
Sbjct: 722 RGMKLKDGMSIISMQVAR------------------------------------------ 739

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      K+  ILT +E G+GK T   D+   NR G+G+ +   S  N  G +V  
Sbjct: 740 -----------KDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRN--GNVVYS 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI------- 897
             V  + +++L+++KGTL+R  V+EI +  R T+GV + +  K E VV +  +       
Sbjct: 787 VAVTPDQEVVLITNKGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDEL 846

Query: 898 RESEIVDEAESTE 910
            + +I D  ES E
Sbjct: 847 PDIDIEDMPESDE 859



 Score = 88.4 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 16/254 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +    VKRV LS +   R    G   V + D+D +    
Sbjct: 629 EHITSILPVSEFSEGYYVFMATKQSTVKRVALSDFSRPR--ANGIIAVDLLDDDELVGTA 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      ++ FS++G   +     + +   QARG   +  + L  G  I ++      + 
Sbjct: 687 ITDGEQDIMLFSNIGKAIRFDENDVRVMGRQARG---VRGMKLKDGMSIISM------QV 737

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
           +  +  ++ AT+HG  +   + D+  INR G+  + + + D    ++     T + +++L
Sbjct: 738 ARKDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRNGNVVYSVAVTPDQEVVL 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKH 757
            T  G  VR  +S I V   RN+ GV+ I++ KG+ V+ +A+V +  D   D  I  M  
Sbjct: 798 ITNKGTLVRTRVSEISVVG-RNTQGVKLINVGKGEIVVGLAVVDVQEDELPDIDIEDMPE 856

Query: 758 MSAQRRLISGDTEE 771
                 ++S D  E
Sbjct: 857 SDEAPEIVSEDDTE 870


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/894 (45%), Positives = 559/894 (62%), Gaps = 67/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAMLE 425

Query: 433 -------LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G       LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRTSRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R    R + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V  +                           +T+ +N      +
Sbjct: 722 RGIRVEKDQAVKSLVVVDPSGGTI-----------------------LTATENGYGKRTH 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E                             +R+S R G+G+ +  V++ N  G +V  
Sbjct: 759 IDE-----------------------------YRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I 
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIV 841


>gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1]
          Length = 862

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/877 (45%), Positives = 549/877 (62%), Gaps = 68/877 (7%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPV RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD +
Sbjct: 1   VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF PNY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL EV+DGC+A I++ +I ++ LM
Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVN 276
           E I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVN
Sbjct: 181 EYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVT 300

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  IL AFV  R EVV RRT + L KARDRAH+L  LAIA+AN
Sbjct: 301 FGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALAN 360

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMY 448
           +D ++ +IR +  P  A+  L+   W   ++  +++   D +             DG  Y
Sbjct: 361 IDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGKYY 420

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q +AIL+LRL +LTGL  + + +E   L   I E + IL +  RL+ +I++EL+++
Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVAI 480

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K++ +  RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S 
Sbjct: 481 KEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSA 540

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   E
Sbjct: 541 ARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNE 600

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           RIT I+P  E E      +V  AT  G V++  L++F +   +G IA+ L+  DE++ V+
Sbjct: 601 RITAILPVREYEE---GCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVD 657

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                N+++L + LG+ VRFP   +R    R + GVRGI+L   D+VIS+ I        
Sbjct: 658 LTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGVRGINLNGDDRVISLII-------- 708

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                           +  ILTV+E G+
Sbjct: 709 ---------------------------------------------PRGDGEILTVTENGY 723

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT+  ++   +R+ +G+ +  VS+ N  G +V    V   DQI++++D GTL+R  V+
Sbjct: 724 GKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMITDAGTLVRTRVS 781

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 782 EVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 818


>gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642]
          Length = 926

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/936 (43%), Positives = 568/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE------------------- 640
             K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                    
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 641 -----------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                                  ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 104/254 (40%), Gaps = 15/254 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL  +  QR    G   + + + D +    I      ++ FS  G
Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSS--GLIALELDEGDILISAAITDGEQEIMLFSDGG 741

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V + K   +      ARG   +  + L +G+++ +++  PE+ S      ++ A++ G 
Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IPEEGSQ-----ILTASERGY 792

Query: 657 VRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S+F +  R G   IAM  +     ++         +I+L +  G  VR  +  +
Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                RN+ GV  I LA  ++++ +  V        E +   + +       +   +   
Sbjct: 853 SSLG-RNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVVDGVIVDAAEVDDAGE 911

Query: 774 SLKNDSSVEGNISE 787
            L+ D++ + +  +
Sbjct: 912 DLQADAASDEDEPQ 925


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/893 (41%), Positives = 550/893 (61%), Gaps = 86/893 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K +  LL D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NP+I +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R    IE+ +  R+ I+VTEIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR+G
Sbjct: 242 ITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 LRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGEPKVLNLKQTLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FALSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +L+F++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++ E +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLEVDKDEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D V+ M IV                                             
Sbjct: 692 ITLDEDDHVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++RI +R GKG++  ++++ N  G LVAV  
Sbjct: 709 ----------NMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V   + I+L++  G +IR+PV +I    R T+GV +     D+ V +V + ++
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVAKAQK 809


>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
 gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
          Length = 847

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/891 (43%), Positives = 559/891 (62%), Gaps = 61/891 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    VS+  EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M +MG +WNK Y K
Sbjct: 6   KETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R  LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH +L D+ ++TVDF PNYD    EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+++ C+A++D+ D+    L  ++ GPDFPT  ++LG  G   AY +GRG +V+R  
Sbjct: 186 NLTEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAIEAYRSGRGRVVMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      R+ I V+E+PYQVNKA ++E+IAE+V+EKR+  I+DLRDESD+ G R+ I
Sbjct: 246 AEIETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+V+LN LY++T+LQS+F++NMVAL    P+   L   LKAF+  R EVV RR
Sbjct: 306 ELKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L KARDRAH+L GLA+A+ NLD ++ +IR + +P  A+ +++ R W    +  L+ 
Sbjct: 366 SIFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLA 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              + S  + +DG  +LSE Q +AIL+LRL RLTGL +D IR E   L   I+E L+IL 
Sbjct: 426 ERGEPSAGLQADG-YHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILG 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S +RL+ +I+ EL++++D+    RR+ IV     + +ED I  E+MVVT +H GY+K  P
Sbjct: 485 SDARLMAVIRAELVAIRDQYGDARRSEIVADTGVIANEDLIAEENMVVTFTHAGYIKAQP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           ++ + AQRRGG+G+     ++EDFV  +F  STH +VLFFS+LG V+ +KV++LP     
Sbjct: 545 VTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQSGRS 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK ++N+LSL   E ITT++P  E +      YV   T HG V++  L ++ +    G
Sbjct: 605 ARGKPIVNLLSLAPSEGITTVLPVREFQE---GQYVCMVTAHGVVKKTPLMEYSRPRSQG 661

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  D +++V     + + +L T+ G  VRFP   +R    R + GVRGISL   
Sbjct: 662 INAINLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPMG-RTARGVRGISLDAD 720

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS  IV                                                   
Sbjct: 721 DRVISAQIVDP------------------------------------------------- 731

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +Q ILT + KG+GK T+  ++R +NR GKG+ A   +  N  G +V    V ++D+
Sbjct: 732 ----DQVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARN--GQVVGALAVKESDE 785

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++LVS+ GTLIR+ V  IR   R  +GV +   A DE++  +  I +++  
Sbjct: 786 LMLVSNGGTLIRIAVQGIRRTGRNAQGVRLIQLAPDEQLAGLALIADAQEE 836



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 100/238 (42%), Gaps = 15/238 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           EG+  +           V  V+  G VK+ PL  Y   R   +G + + +   D +  + 
Sbjct: 620 EGITTVLPVREFQEGQYVCMVTAHGVVKKTPLMEYSRPRS--QGINAINLDPGDRLVAVC 677

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +       + F+  G   +    ++      ARG   +  +SL+  +R+ +      D+ 
Sbjct: 678 LSDGQREFMLFTRKGMAVRFPEDKVRPMGRTARG---VRGISLDADDRVISAQIVDPDQ- 733

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILL 698
                 ++ AT  G  +   + ++ + NR GK  + + +     +++      + ++++L
Sbjct: 734 -----VILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARNGQVVGALAVKESDELML 788

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            +  G  +R  +  IR   GRN+ GVR I LA  +Q+  +A++  A  +  +    ++
Sbjct: 789 VSNGGTLIRIAVQGIR-RTGRNAQGVRLIQLAPDEQLAGLALIADAQEEAGQCDFELE 845


>gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297]
 gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297]
          Length = 881

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/909 (44%), Positives = 562/909 (61%), Gaps = 68/909 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK 
Sbjct: 3   EIAKEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A+I+NPD+D+D LME I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGAYINGRKGIVEAYRTGRGRIYM 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +       RE I+V EIPYQVNKA ++EKIAELV+EK+I  I++LRDESD++G R
Sbjct: 243 RAKADVVVDEKTGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKRG S DV+LN LY  T L+++F +N VAL   +P+   L  +L+AF+  R EVV
Sbjct: 303 IAIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVDGQPKVLNLKEMLEAFIRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR R H+L GLA+A+AN+DE++ +IR S     A+  ++ RSW   D+  
Sbjct: 363 TRRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSA 422

Query: 430 LIDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++         +D     G  D   YLS  Q + IL++RL +LTGL  D +  E   + 
Sbjct: 423 MLERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQII 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E L IL+S  RL+ +I++EL+ VKDE    R+T I+   LD+  ED I  EDMVVT
Sbjct: 483 DDIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEIMTSRLDLSMEDLITEEDMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y AQ+RGGKGRS   ++D+DF+  L + S+H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  ARG+ ++N+L L   ER+T I+P    +    + ++  AT  G V++  
Sbjct: 603 RVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFD---PDYFIFMATASGTVKKTS 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F +   SG IA+ LD  D ++ V     E +++L +  G+ VRF    +R    R +
Sbjct: 660 LDAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRPMG-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGISL  G  VIS+ +                                         
Sbjct: 719 RGVRGISLEDGQSVISLIV----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +E F+LT SE+G+GKRT   +F    R  KG+ A   +  N  G L
Sbjct: 738 ------------PQEEGFVLTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRN--GKL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + D+++L+SD+GTL+R  V+EI    R T+GV +   A DE++VS+ERI E E
Sbjct: 784 VGAKQVFNGDEVMLISDQGTLVRTRVDEISSLGRNTQGVKLIRVADDEKLVSIERIEEPE 843

Query: 902 IVDEAESTE 910
            V E    E
Sbjct: 844 DVVEPLEGE 852


>gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 899

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/915 (44%), Positives = 570/915 (62%), Gaps = 43/915 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE +VVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                          G  EEI +   D  VE
Sbjct: 719 GVRGIRLTKGEEVVSLIVA---------------------ERAGGVEEEIEADDVDDVVE 757

Query: 783 GNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                E        +    +ILT +E GFGKRT   ++    R  +G+     ++ N  G
Sbjct: 758 TTDGAEAAVIEVADDGNVAYILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTTERN--G 815

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  
Sbjct: 816 KLVRAVLLGATDEVLLISDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDA 875

Query: 900 -----SEIVDEAEST 909
                 ++VDEA ++
Sbjct: 876 SLDEVEDVVDEASAS 890


>gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 929

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/922 (40%), Positives = 557/922 (60%), Gaps = 27/922 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDDTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D P+ D+D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI +LVR+K +  IAD
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R+W +S ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL  +K      R++ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRKSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++ V      +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G         +  +S  +    D +  +          +       
Sbjct: 718 NE-------FWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGRGSG 770

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                 L  +  +   I+     E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 771 GLRGMRLPENGRIVSLIT--FAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 828

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V ++D ++L++  G LIR  V++IR   RA  GV + +  + 
Sbjct: 829 AINTGERN--GDLVAATLVGESDDLMLITSGGVLIRTKVDQIRETGRAAAGVKLINLDEG 886

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E++VS+ER+ E E  D A   E
Sbjct: 887 EQLVSLERVAE-EPEDTAAEDE 907



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 110/294 (37%), Gaps = 44/294 (14%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + ++++D +  + 
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEDDCLVGVA 697

Query: 582 IVSTHTSVLFFSSLGFVYK-------------------------EKVWRLPIGSPQA--R 614
                  ++ FS+LG   +                                 G   A   
Sbjct: 698 KTGGSDDIMLFSNLGKAIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAIS 757

Query: 615 GKALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           GK  +            + L +  RI +++ F   E    +L V+ AT +G  +R  ++D
Sbjct: 758 GKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAP-ECEQGDLQVLTATANGYGKRTPIAD 816

Query: 665 FIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR +
Sbjct: 817 YSRKNKGGQGNIAINTGERNGDLVAATLVGESDDLMLITSGGVLIRTKVDQIRE-TGRAA 875

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GV+ I+L +G+Q++S+  V     D            A          E    
Sbjct: 876 AGVKLINLDEGEQLVSLERVAEEPEDTAAEDESDADTGALENEAENKGAEEAEE 929


>gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 928

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/936 (43%), Positives = 570/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILTQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L++GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +    G IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis]
 gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  811 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/915 (41%), Positives = 550/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 928

 Score =  811 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/935 (43%), Positives = 568/935 (60%), Gaps = 102/935 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------------------- 637
            K + +P  S  ARG+ L+N+L L+ GE ITT++P                         
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 638 -----EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                E+E              ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM      
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML----- 776

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                                   I EE  Q        ILT S
Sbjct: 777 ----------------------------------------IPEEGSQ--------ILTAS 788

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R
Sbjct: 789 ERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVR 846

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V E+    R T+GV +   A DE++V +ER++E
Sbjct: 847 TRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 920

 Score =  811 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/920 (40%), Positives = 553/920 (60%), Gaps = 28/920 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E    +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLIT---FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAES 908
           E +VS+ER+ +    +  E 
Sbjct: 885 ETLVSLERVAKEPEDESNED 904



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 116/285 (40%), Gaps = 42/285 (14%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRS--QGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-------------------------RGK 616
             S    ++ FS+LG   +   +    G+ +A                          GK
Sbjct: 698 QTSGSDDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E++ ++L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-EAAQSDLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           VR I+L +G+ ++S+  V     D              + + S D
Sbjct: 876 VRLINLDEGETLVSLERVAKEPEDESNEDLQDTGTEVGQEIPSDD 920


>gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 928

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/936 (43%), Positives = 570/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
 gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
          Length = 866

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 549/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+     R
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + SDG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYSVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ +INI  L +GE+IT ++P  E  +   + +V   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKTPLEAFG 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQNVIALLVAGD------------------------------------------- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 734 ---------EQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 783 VDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833



 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 14/242 (5%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +  V   + LG VK+ PL  +    R  KG   V + D D++    I      V+ FS  
Sbjct: 636 DKFVFMGTALGTVKKTPLEAFGRVLR--KGIIAVGLDDGDYLIGAAITDGQHDVMLFSDS 693

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G   +     +     +ARG   +  + L  G+ +  ++   +++ S     V+ AT++G
Sbjct: 694 GKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGDEQQS-----VLTATENG 745

Query: 656 NVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R  + ++ +  R   G IA++      ++++     QE  I+L T  G  +R  +S 
Sbjct: 746 FGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTRVSE 805

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR    R + GV  ISL +G ++  +  V  A+A+ D                SG  E  
Sbjct: 806 IREMG-RATQGVTLISLDEGTKLSGLQQVAEAEAEGDAESDAEGPAEGNNAGDSGGEEGG 864

Query: 773 TS 774
            +
Sbjct: 865 AA 866


>gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710]
 gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568]
 gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304]
 gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399]
 gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385]
 gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196]
          Length = 916

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/915 (41%), Positives = 550/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 925

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/936 (43%), Positives = 570/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 925

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/936 (43%), Positives = 570/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 104/277 (37%), Gaps = 20/277 (7%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR    G   + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSS--GLIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++  P
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IP 778

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQEN 694
           E+ S      ++ A++ G  +R  +S+F +  R G   IAM  +     ++         
Sbjct: 779 EEGSQ-----ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +     RN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSLG-RNTQGVTLIKLASDEKLVGLERVQEPSEVEGEEL-- 890

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                     +  D  E+     D   +    E+  Q
Sbjct: 891 ---EGELVDGVIVDAVEVDDAGEDLQADAASDEDEPQ 924


>gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013]
          Length = 916

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/915 (41%), Positives = 550/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPNGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1]
 gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1]
          Length = 896

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/909 (43%), Positives = 554/909 (60%), Gaps = 81/909 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H LL DL K+TVDF PNYDG+   P VL AR P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DGC+AVIDN DI +D L++ I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGAFINGRAGIIEAYKTGRGRIYM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H E    G+R+ IV TEIPYQ+NKA ++EKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG + DV++N ++  T LQS+F +NMVAL   +P+   +  IL+ FV  R EVV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPQLLNIKQILECFVKHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+++AN+D V+ +IR SP    A+ +++  SW   D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVA 422

Query: 430 LIDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++         DD     G  DG  +LS  Q +AIL+LRL RLTGL  D +  E  +L 
Sbjct: 423 MLERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L+ILS+  RL+ +I++EL  VK+     RRT I+    D+   D I    MVVT
Sbjct: 483 ELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLTIADLIDEAPMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY K  PL  Y+AQRRGG+G+S   M+DED +  L + S+H +++ FS+ G VY  
Sbjct: 543 ISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------------EDESSWNN 645
           +V+ +P+ S  A+G+ ++N+L L +GE I+ ++P P                +D     +
Sbjct: 603 RVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDVSDDAIVEAS 662

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            Y+  AT +G V++  +  F +   +G IA+ LD  DE++ V     ENDI+L +  G+ 
Sbjct: 663 SYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDIMLVSSSGKT 722

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  S +R    R + GVRGI L +  +V  +++++  D                    
Sbjct: 723 IRFKESDVRAMG-RTAAGVRGIRLGEDAKV--VSLIVPQDGSA----------------- 762

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                             +L   E G+GKRT   DF +  R G+
Sbjct: 763 ----------------------------------VLMACENGYGKRTLVEDFPVYGRGGQ 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+    VS+ N  G +V    V++ D+IIL++D+GTL+R  V E+    R T+GV +   
Sbjct: 789 GVIGIQVSERN--GPVVGAAQVDETDEIILITDQGTLVRTRVTEVSCQGRNTQGVTLIRL 846

Query: 886 AKDERVVSV 894
             DE +V +
Sbjct: 847 TNDEHLVGI 855



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 71/168 (42%), Gaps = 9/168 (5%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSE 805
            E +  + +      +I  + +E+     D   + +  +  +    +L  +   ++T+S 
Sbjct: 486 GELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLTIADLIDEAPMVVTISN 545

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ K     +++   R G+G  +  +   + I  L      + +D I+L S+ G +  +
Sbjct: 546 TGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHL---LVTSSHDTIMLFSNFGKVYWL 602

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            V EI +ASR+ KG   V +    + E + ++  +   E V+     +
Sbjct: 603 RVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEAD 650


>gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153]
          Length = 916

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/915 (41%), Positives = 550/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
 gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
          Length = 918

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/921 (40%), Positives = 554/921 (60%), Gaps = 28/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+++R +L++GQGNFGS+
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDEAADNENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +  L  DS +   I+     E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGM-RLPVDSKIVSLIT--FSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E +VS+ER+ E E   +    
Sbjct: 885 ETLVSLERVAEDESESDLSDA 905


>gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 928

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/936 (43%), Positives = 570/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILTQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-------------------EDE 640
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                     +D 
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEAELDDA 661

Query: 641 SSWNN-----------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
            + N                   ++  +T +G V++  L  F +    G IA++LD  D 
Sbjct: 662 ENSNETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E            +   +   +  G VK+ PL  +  QR    G   + + + D + 
Sbjct: 666 ETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRS--VGLIALELDEGDILI 723

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++  PE
Sbjct: 724 SAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IPE 779

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQEND 695
           + S      ++ A++ G  +R  +S+F +  R G   IAM  +     ++         +
Sbjct: 780 EGSQ-----ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE 834

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           I+L +  G  VR  +  +     RN+ GV  I LA  ++++ +  V   
Sbjct: 835 IMLISDQGTLVRTRVGEVSSLG-RNTQGVTLIKLASDEKLVGLERVQEP 882


>gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020]
          Length = 928

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/936 (43%), Positives = 569/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGLGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
 gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
          Length = 916

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/915 (41%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 928

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/936 (43%), Positives = 570/936 (60%), Gaps = 104/936 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM     
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML---- 776

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                    I EE  Q        ILT 
Sbjct: 777 -----------------------------------------IPEEGSQ--------ILTA 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+
Sbjct: 788 SERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLV 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 846 RTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881


>gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/915 (41%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 880

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/873 (51%), Positives = 621/873 (71%), Gaps = 5/873 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y K ARI G+VMGKYHPHG+AAI
Sbjct: 1   MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDF
Sbjct: 61  YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           RPNYDG+  EPVVL A +P++LVNG  G+AVGMATNIP+HNLGE++D C+  +DNP++ L
Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           D L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G +HIE    DR+ IV+ EIPY
Sbjct: 181 DELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI+L+R A A  ILNQ+   T L
Sbjct: 241 QVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTPL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           +S FSVN + LN  +P   +L  I++AF+ FR+EV++RRT++ L K R++AH+ +GL IA
Sbjct: 301 RSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           V ++DEV++IIR + +P  A REL+ + W  S+  + I  +   S +   DG   L+E+Q
Sbjct: 361 VLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL+++L RLTGL +D +  EL+S+   IKE +  L S  +L+  IK  L  +K+   
Sbjct: 421 IKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFA 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PR+T I E   D+E ED I +EDMV+TV+  GY+KRV LS YR QRRGGKG+ G  +++
Sbjct: 481 VPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKE 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+  P ARG+AL+NI  L +GE IT I
Sbjct: 541 EDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           MP P    +  N  +VF T +GN+RRN L+DF  I  +GKIA+KLD  D+++SV+ C + 
Sbjct: 601 MPLPS--ENDENQNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEI 658

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + + L+T+ G+ +RF +S +R F  RNS GVRGI LAK D VISM I+       + +  
Sbjct: 659 DHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKEL 718

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           Y+K   A +RL +     I S    +  +  I  E   +L + E+FILT++E GFGKRTS
Sbjct: 719 YLKVPLA-KRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTS 777

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           +Y++RI+NR G GI     +  N  G +VA FPV   D I+L++DKG LIR+ VN+IRIA
Sbjct: 778 AYEYRITNRGGVGITNILTTSRN--GNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIA 835

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 836 GRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 868


>gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 899

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/915 (43%), Positives = 569/915 (62%), Gaps = 43/915 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                          G  EEI   + D  VE
Sbjct: 719 GVRGIRLTKGEEVVSLIVA---------------------ERAGGVEEEIEGDEVDDVVE 757

Query: 783 GNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                E        +    +ILT +E G+GKRT   ++    R  +G+     ++ N  G
Sbjct: 758 ATDGSESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--G 815

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  
Sbjct: 816 KLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDA 875

Query: 900 -----SEIVDEAEST 909
                 E VDEA ++
Sbjct: 876 SLDDVDEGVDEASAS 890


>gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190]
 gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902]
 gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945]
 gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136]
          Length = 916

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/915 (41%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris]
          Length = 899

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/908 (44%), Positives = 568/908 (62%), Gaps = 32/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR L+++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D +  +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LAKG++V+S+ +   A    DE              +  ++ E      D +  
Sbjct: 719 GVRGIRLAKGEEVVSLIVSERAGGVEDE--------------VEDESAEEVVETTDGAEP 764

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I      ++     +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 765 AVIDVADNGDVA----YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGSTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLE 878

Query: 903 VDEAESTE 910
             E    E
Sbjct: 879 EPEDVVDE 886


>gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 900

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/912 (43%), Positives = 571/912 (62%), Gaps = 37/912 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +     A   E     + +        G    +  + +D +V 
Sbjct: 719 GVRGIRLTKGEEVVSLIVAER--AGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNV- 775

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 776 ---------------AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--- 899
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+     
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 900 --SEIVDEAEST 909
              E+VDEA ++
Sbjct: 879 EVDEVVDEAGAS 890


>gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis]
 gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/915 (40%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 899

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/915 (44%), Positives = 569/915 (62%), Gaps = 43/915 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL++V++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINVREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                          G  EEI   + D  VE
Sbjct: 719 GVRGIRLTKGEEVVSLIVA---------------------ERAGGVEEEIEGDEVDDVVE 757

Query: 783 GNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                E        +    +ILT +E G+GKRT   ++    R  +G+     ++ N  G
Sbjct: 758 ATDGGESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--G 815

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  
Sbjct: 816 KLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDA 875

Query: 900 -----SEIVDEAEST 909
                 E VDEA ++
Sbjct: 876 SLDEVDEGVDEASAS 890


>gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans]
          Length = 935

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/950 (42%), Positives = 567/950 (59%), Gaps = 79/950 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +  H L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP ID+D LME I GPDFPT  ++ G  GI   Y TGRG + +
Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG +ADV+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQLLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP  AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422

Query: 431 I-------DLIDDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          DD    +G   G   L+EVQ   ILE+RL RLTGL ++ +  E   L  
Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I++EL+S+++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP   P ARG+ +IN + L QGER+  ++P  E     +  YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYA---DGHYVFFATRKGMVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI------------ 710
           S+F    + GK+A+ LD  D ++ V     E D+LL    G+ VRF              
Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEADEVAV 719

Query: 711 --------------------SAIR----------VFAGRNSVGVRGISLAKGDQVISMAI 740
                                  R             GR+S GVRGI LAK + V+S+ +
Sbjct: 720 DEAAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A+   ++                 + +  T   +D                  + +I
Sbjct: 780 AEPAEGQDEDADD-------ADLAQEAEADAQTRTADD-----------------ADAYI 815

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +E G+GKRT   ++    R  +G+     S+ N  G LV    ++  D+++L+SD G
Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R   +EI    R T+GV +   +K E++ +VER+  S + +E  S E
Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923


>gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275]
 gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149]
 gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 916

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/915 (41%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 916

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355]
          Length = 916

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/915 (40%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18]
 gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140]
 gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1]
 gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
          Length = 916

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
 gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
          Length = 900

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/912 (43%), Positives = 571/912 (62%), Gaps = 37/912 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +++ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVVRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +     A   E     + +        G    +  + +D +V 
Sbjct: 719 GVRGIRLTKGEEVVSLIVAER--AGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNV- 775

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 776 ---------------AYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--- 899
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+     
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 900 --SEIVDEAEST 909
              E+VDEA ++
Sbjct: 879 EVDEVVDEAGAS 890


>gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73]
 gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans]
          Length = 935

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/950 (42%), Positives = 567/950 (59%), Gaps = 79/950 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +  H L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP ID+D LME I GPDFPT  ++ G  GI   Y TGRG + +
Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG +ADV+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP  AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422

Query: 431 I-------DLIDDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          DD    +G   G   L+EVQ   ILE+RL RLTGL ++ +  E   L  
Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I++EL+S+++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP   P ARG+ +IN + L QGER+  ++P  E     +  YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYA---DGHYVFFATRKGMVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI------------ 710
           S+F    + GK+A+ LD  D ++ V     E D+LL    G+ VRF              
Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVDEVAV 719

Query: 711 --------------------SAIR----------VFAGRNSVGVRGISLAKGDQVISMAI 740
                                  R             GR+S GVRGI LAK + V+S+ +
Sbjct: 720 DEAAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A+   ++                 + +  T   +D                  + +I
Sbjct: 780 AEPAEGQDEDADD-------ADLAQEAEADAQTRTADD-----------------ADAYI 815

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +E G+GKRT   ++    R  +G+     S+ N  G LV    ++  D+++L+SD G
Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R   +EI    R T+GV +   +K E++ +VER+  S + +E  S E
Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923


>gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
 gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
          Length = 916

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIRG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
          Length = 916

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 898

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/909 (44%), Positives = 567/909 (62%), Gaps = 40/909 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREY---VDNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                          G  EEI +   D  VE
Sbjct: 719 GVRGIRLTKGEEVVSLIVA---------------------ERAGGADEEIEADDVDDVVE 757

Query: 783 GNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                E        +    +ILT +E G+GKRT   ++    R  +G+     ++ N  G
Sbjct: 758 TTDGAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--G 815

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  
Sbjct: 816 KLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDA 875

Query: 900 SEIVDEAES 908
           S  +DE E 
Sbjct: 876 S--LDEVED 882


>gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013]
          Length = 916

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/915 (41%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594]
          Length = 916

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/915 (40%), Positives = 549/915 (60%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
          Length = 916

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIRG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
 gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
          Length = 836

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/895 (44%), Positives = 560/895 (62%), Gaps = 83/895 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R++
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL D+ K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VA+IDNP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    I
Sbjct: 188 EVIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E +   +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G RVVIELK
Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  +ILN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT +
Sbjct: 308 KDENPTIILNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RLTGL R+ I  EL  +   I    +IL+S +
Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLEREKIMEELREILKYIARLKEILASEA 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L   E+ITTI+P  E     ++ +++ AT++G V++  + ++      G IA
Sbjct: 582 KAIVNLLNLAANEKITTILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V     + D+LL +  G+ +RF    +R    R S GVRG++L   D V
Sbjct: 639 VNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRTVG-RVSRGVRGMTLEGEDVV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I+     D                                                
Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L
Sbjct: 711 ---TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLML 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++D+G ++RVPV    I  R T+GV +    ++ERVV+V R+ E E  DE+E  E
Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGE 820



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 106/252 (42%), Gaps = 12/252 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +      V +  ++  +  G VK+  +  Y   R G  G   V + + D +  + 
Sbjct: 594 EKITTILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVG--GIIAVNLDEGDKLITVA 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      VL  S+ G   + K   +      +RG   + +    +GE +  ++       
Sbjct: 652 LTDGKQDVLLASANGKAIRFKEEDVRTVGRVSRGVRGMTL----EGEDV--VIGMEILNE 705

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
           ++ +  +   T++G  +R ++S++   +R GK  + + + +    ++ ++    +ND++L
Sbjct: 706 NFTDSTIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLML 765

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G+ +R P++   +   RN+ GVR +   + ++V+++A +   +   +     +  M
Sbjct: 766 ITDQGKILRVPVAGFSIIG-RNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGELDEM 824

Query: 759 SAQRRLISGDTE 770
                      E
Sbjct: 825 VELESGEEQGEE 836


>gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 826

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/888 (42%), Positives = 545/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    +  V I  EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 11  EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 70

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD  AA R
Sbjct: 71  PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 130

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ K+T+D+ PNYDG  QEPVVL AR+PN++VNG  GIAVGMATN
Sbjct: 131 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 190

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+NPD+    LM  I+GPDFPTGA ILGR GI+ AY+TGRGS+ 
Sbjct: 191 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+   ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 251 MRAKTTIEEV-NNKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 309

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T+LQS F +  +AL   +P+   L  +L  ++  +  V+
Sbjct: 310 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 370 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L  +I E   
Sbjct: 421 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 463

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II +EL  ++      RRT I  G   +EDED I RE++V+T++H GYVK
Sbjct: 464 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 523

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGG+G  G+  ++ DFV  LF+ ++H  ++FF+  G VY+ K + +P  
Sbjct: 524 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++P    ES  +  ++ FAT+ G V++  L D+  I 
Sbjct: 584 GRTARGTPIINLIQIEQGETVNAVIPI---ESFESGHFLFFATQQGIVKKTPLKDYNNIR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      +I++ T+ G  + FP   +R    R + GV+GI +
Sbjct: 641 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSMG-RAATGVKGIHI 699

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D VI M IV                                                
Sbjct: 700 SEDDAVIDMDIVDE---------------------------------------------- 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+ KGFGKRT   ++RI  R GKGI+  +V+  N  G +V +  V +
Sbjct: 714 -------NNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVVGLKVVEE 764

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++ +++++  GT+IR  ++ I I  R T+GV + +T +D+ V +V R+
Sbjct: 765 DEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATVTRV 812


>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
 gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
          Length = 836

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/895 (45%), Positives = 559/895 (62%), Gaps = 83/895 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R++
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLT 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VAVIDNP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    I
Sbjct: 188 EVIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E +   +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G R+VIELK
Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT +
Sbjct: 308 KDENPTILLNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RLTGL RD I  EL  +   I    +IL+S +
Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEA 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L   E+ITTI+P  E     ++ +++ AT++G V++  + ++      G IA
Sbjct: 582 KAIVNLLNLAANEKITTILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V     + D+LL +  G+ +RF    +R    R S GVRG++L   D V
Sbjct: 639 VNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRTVG-RVSRGVRGMTLEDEDVV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I+     D                                                
Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L
Sbjct: 711 ---TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLML 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++D+G ++RVPV    I  R T+GV +    ++ERVV+V R+ E E  DE E  E
Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGE 820



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 106/252 (42%), Gaps = 12/252 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +      V +  ++  +  G VK+  +  Y   R G  G   V + + D +  + 
Sbjct: 594 EKITTILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVG--GIIAVNLDEGDKLITVA 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      VL  S+ G   + K   +      +RG   +  ++L   + +  +    E+  
Sbjct: 652 LTDGKQDVLLASANGKAIRFKEEDVRTVGRVSRG---VRGMTLEDEDVVIGMEILNEN-- 706

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
            + +  +   T++G  +R ++S++   +R GK  + + + +    ++ ++    +ND++L
Sbjct: 707 -FTDSTIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLML 765

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G+ +R P++   +   RN+ GVR +   + ++V+++A +   +   +     +  +
Sbjct: 766 ITDQGKILRVPVAGFSIIG-RNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGELDEI 824

Query: 759 SAQRRLISGDTE 770
                      E
Sbjct: 825 VELESGEEQGEE 836


>gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
          Length = 916

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis]
 gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis]
 gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis]
 gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/915 (41%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
 gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
          Length = 916

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+D ++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  I     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDGI-EDETADSENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 698 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 757

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 758 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 816

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 817 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 875

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 876 VKLINLDEGETLVSLERVAEDESELSDASV 905


>gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 898

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/897 (48%), Positives = 635/897 (70%), Gaps = 5/897 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K
Sbjct: 5   NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL KAAHFLL+D+ +DTVDFRPNYD +  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+A IDNP+I  D L+ I+RGPDFPTG  ILG  GI++A+ TG+G+I+I+G 
Sbjct: 185 NLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIIQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I EL++EK+I  I DLRDES++ G RV IE
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  VILNQ+   T L++ FS+N + L+  KP+  +L  I+  FV +R+EV+ RRT
Sbjct: 305 LKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R+RAH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + ++++I+
Sbjct: 365 QFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ D S +I  D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L 
Sbjct: 425 LVAD-SKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTELLK 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL +IK     +K +L  PRRT I     + + ED I +EDMVVTV+  GY+KR  
Sbjct: 484 NKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIKRAK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQ+RGGKGR G  +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++MP P++      L +VFAT  GN+RRN LSDF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAM LD+ D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+  
Sbjct: 664 KIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSD 723

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM+++L  D D +++  Y+K +   +R+   +   +         +  + ++    
Sbjct: 724 DNVISMSVLLAMDIDSEKKDLYLK-VPLDKRMCVKEEGVVNGGIAKILCDLGLEQDIFVT 782

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA FPV  ND 
Sbjct: 783 MVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARN--GNVVASFPVESNDH 840

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           I+L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV +I +++   + +  
Sbjct: 841 IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDIDGN 897


>gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 914

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/915 (41%), Positives = 543/915 (59%), Gaps = 77/915 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 31  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDWNR 90

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  G+VMGKYHPHG+ AIYD + RMAQ +SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 91  PYRKSARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAAMR 150

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDG+ +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 151 YTEIRLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMATN 210

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ +PD  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 211 IPPHNLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVV 270

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 271 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKSGM 330

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 331 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLVSVFLQHRREV 390

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+  LM +SW++  ++
Sbjct: 391 VTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDSQLVR 450

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    D    +G DG   LS+ Q + IL++RL RLTGL +D 
Sbjct: 451 EMLTRTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQDK 510

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E       + + LDIL+   R+  II QEL +++ E      + RR+ I     D+ 
Sbjct: 511 IVAEYKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARRSIIEHSAQDLC 570

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 571 TEDLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 630

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P      S   + Y
Sbjct: 631 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAMRSFPADRY 690

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA  LD  D ++       ++D++L +  G+ VR
Sbjct: 691 VFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 750

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R  + R + GVRG+ L +G  VI+M +                           
Sbjct: 751 FDENDVRPLS-RQARGVRGMLLEEGQSVIAMLVAED------------------------ 785

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRT   ++    R  KG+
Sbjct: 786 ----------------------------ETQSVLTATENGYGKRTGIVEYTRHGRGTKGM 817

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S  N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +  +
Sbjct: 818 IAIQQSGRN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIALDE 875

Query: 888 DERVVSVERIRESEI 902
             ++  ++RI E++ 
Sbjct: 876 GAKLSGLQRIVENDA 890


>gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/909 (44%), Positives = 567/909 (62%), Gaps = 40/909 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D    +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREY---VDNRYVFFATRNGTVKKTSL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                          G  EEI +   D  VE
Sbjct: 719 GVRGIRLTKGEEVVSLIVA---------------------ERAGGADEEIEADDVDDVVE 757

Query: 783 GNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                E        +    +ILT +E G+GKRT   ++    R  +G+     ++ N  G
Sbjct: 758 TTDGAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--G 815

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  
Sbjct: 816 KLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDA 875

Query: 900 SEIVDEAES 908
           S  +DE E 
Sbjct: 876 S--LDEVED 882


>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 871

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/912 (42%), Positives = 553/912 (60%), Gaps = 50/912 (5%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             SSD  +++ I    + DEM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G
Sbjct: 2   TFSSDPAQDR-IILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI G GNFGS+D DP
Sbjct: 61  LTPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDP 120

Query: 125 PAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRLQ      LL D+ ++TVDF  N+DGS QEP+VL AR P +L+NG  GIA
Sbjct: 121 PAAMRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG VA+I NP+I    LM+II GPDFPTG  ILG  GI+ AY T
Sbjct: 181 VGMATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGTAGIREAYTT 240

Query: 244 GRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           GRGSI +RGV+ IE        DRE I++TE+P+Q NKAA++E+IAE V +KR+  I+D+
Sbjct: 241 GRGSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIELKR A   V+LN LY+ T +Q+ F  NM+AL G  P+  TL   L 
Sbjct: 301 RDESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLTLRQFLS 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+ FRE+ ++RRT++ L KA++R H+L GL IA+ NLD V+++IR + +   AR+ELM 
Sbjct: 361 VFLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELMD 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LS+ Q  AIL+++L RLT L  + I  E   
Sbjct: 421 --------------------------GFGLSDTQADAILQMQLRRLTALEAEKIEREHQD 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +  DIL+ R R+L II+ E+  +K +  +PRRT I   L D++D D I  +  V
Sbjct: 455 LQERIADLEDILARRERVLEIIETEVTELKTKFASPRRTLIEANLADLDDIDLIANDQAV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + V+  GYVKR+P+  + AQ R  +GR+G  ++++D V   F    H SVLFFS  G VY
Sbjct: 515 ILVTEQGYVKRMPVDTFNAQSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVY 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             + +++P+ S  ARG  L+ +L + + E+IT+++P  E      + Y+V  T  G +++
Sbjct: 575 CLRAYQIPVSSRTARGVPLVQLLPIPREEKITSVIPVSE---FSEDEYLVMMTAGGFIKK 631

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718
             L+ F  I  +G IA+ L+  D +  V     E+ I++ ++ G  + F     ++   G
Sbjct: 632 TALAAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRPLG 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVR + L +GD+ I M I+  A  +                    D ++  +   D
Sbjct: 692 RATRGVRAMRLREGDEFIGMDILSSAVVETLGNAT--------------DADDEETDDPD 737

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             VE + +EE  + ++    ++L ++  GFGKR     FR+ NR+GKG+ AT   K+   
Sbjct: 738 VLVEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTP 797

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             L A+  VN  D+++LV+ +G +IR  V +I   SRA  GV +    +D+ + +V  + 
Sbjct: 798 DQLAALRIVNAEDELMLVTSRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVALVP 857

Query: 899 ESEIVDEAESTE 910
             ++ DE   TE
Sbjct: 858 PEDLSDEEGETE 869



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 105/276 (38%), Gaps = 46/276 (16%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        ++ +V ++  G++K+  L+ +   R    G   + + + D +  +
Sbjct: 602 EEKITSVIPVSEFSEDEYLVMMTAGGFIKKTALAAFSNIR--ANGLIAISLEEGDLLRWV 659

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-- 636
            +     S++  S  G    ++    +L       RG   +  + L +G+    +     
Sbjct: 660 RLTRAEDSIVIGSRRGMSIHFRADHQQLRPLGRATRG---VRAMRLREGDEFIGMDILSS 716

Query: 637 ----------------------------PEDESS---WNNLYVVFATKHGNVRRNKLSDF 665
                                        E+ES        +V+  T +G  +R  ++ F
Sbjct: 717 AVVETLGNATDADDEETDDPDVLVEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQF 776

Query: 666 IQINRSGK-----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              NR+GK        KL + D++ ++     E++++L T  G  +R  ++ I   + R 
Sbjct: 777 RLQNRAGKGVTATKFKKLKTPDQLAALRIVNAEDELMLVTSRGIVIRQAVTDISSQS-RA 835

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           + GVR   L + D + ++A+V   D   +E    ++
Sbjct: 836 ATGVRVQRLDEDDYIAAVALVPPEDLSDEEGETELE 871


>gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
 gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
          Length = 876

 Score =  806 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/920 (45%), Positives = 564/920 (61%), Gaps = 73/920 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E    + +E  + +  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MAE----TPKEIAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WNK Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR  L++GQGNFGS+
Sbjct: 57  NELNNDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TVDF  NYDGS Q PVVL  R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV GC+A IDNP+ID+D LME I GPDFPTGA+I GR GI  A
Sbjct: 177 GIAVGMATNIPPHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAIINGRAGIVQA 236

Query: 241 YATGRGSIVIRGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG I +R  +  I   S  ++ I++ EIPYQ+NKA ++E+IAELV+EK++  I +L
Sbjct: 237 YRTGRGRIYVRARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITEL 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIEL+RG   DV+LN LY  T LQS+  +NMVAL   +P    L+ +++
Sbjct: 297 RDESDKDGLRVVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQPRTLNLLEMIE 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT YLL KAR+R HVL GLAIA+ N+DE++ +I+ SP P  A+  L+ 
Sbjct: 357 AFVRHRREVVTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVA 416

Query: 420 RSWNASDIKDLIDLI-------DDSSYTIGSDG-TMYLSEVQTRAILELRLARLTGLGRD 471
           + W + ++  +++         DD     G  G   +LS  Q +AILELRL RLTGL  +
Sbjct: 417 KPWQSGEVTGMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHE 476

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E +   +EI   L+IL    RL  +I+ EL  + +E    R T I +   D+  ED
Sbjct: 477 KLLQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDDRLTEITDSTHDLSVED 536

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED VVT+SH GY K   LS Y+AQRRGG GRS   ++DEDFV  L I STH ++L 
Sbjct: 537 LITEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILC 596

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS LG VY  KV+ +P+ S  ARG+ ++N+L L++GERIT+I+P    E      ++  A
Sbjct: 597 FSDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPV---EGYEEGHFIFMA 653

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  +  F +    G  A++L++ D ++         D++L +  G+ VRF   
Sbjct: 654 TARGIVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQ 713

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R    R + GVRGI L    ++IS+ IV  AD+                         
Sbjct: 714 AVRAMG-RTARGVRGIKLGDEHRLISL-IVPQADST------------------------ 747

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ILTVSEKG+GKRT + +F    R  KG+ A  
Sbjct: 748 ----------------------------ILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMA 779

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +  N  G LV    V+  D+I+L+SD+GT +R  V EI    R T+GV +  T +DE++
Sbjct: 780 TTAKN--GPLVGAVQVSTGDEIMLISDQGTAVRTRVEEISTLGRNTQGVRVIKTREDEKL 837

Query: 892 VSVERIRESEI-VDEAESTE 910
           V + RI E +  V EAES E
Sbjct: 838 VRLSRIVEDDDAVPEAESAE 857



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 91/256 (35%), Gaps = 15/256 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +       +   +  G VK+  +  +  QR    G   + +  +D++    
Sbjct: 633 ERITSILPVEGYEEGHFIFMATARGIVKKTDMQQFARQRS--VGLRALELEADDWLVGTA 690

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+  SS G   + +   +      ARG   +  + L    R+ +++       
Sbjct: 691 VTDGSCDVMLLSSEGKAVRFQEQAVRAMGRTARG---VRGIKLGDEHRLISLIV------ 741

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILL 698
              +  ++  ++ G  +R    +F    +  +             ++     +  ++I+L
Sbjct: 742 PQADSTILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMATTAKNGPLVGAVQVSTGDEIML 801

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  +  I     RN+ GVR I   + ++++ ++ ++  D    E        
Sbjct: 802 ISDQGTAVRTRVEEISTLG-RNTQGVRVIKTREDEKLVRLSRIVEDDDAVPEAESAETVG 860

Query: 759 SAQRRLISGDTEEITS 774
           S +  +   + +   S
Sbjct: 861 SPESGVPEANGDIGES 876


>gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
 gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
          Length = 923

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/906 (41%), Positives = 549/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D+P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I+D
Sbjct: 241 YKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G    +    D  I          D +     +       R     
Sbjct: 718 NE-------YWEKSG----NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890


>gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A
 gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 916

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE+IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+    A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNDEAEDADIETEISDDL-EDETADNENTLPSGKNGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V         +E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 770 LRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 6/114 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596
           V+T +  GY KR P++ Y  + +GG+G   +    R+ D V    +  T   ++  +S G
Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGET-DDLMLITSGG 856

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + + KV ++      A G  LIN   L++GE + ++    EDES  +   V+ 
Sbjct: 857 VLIRTKVEQIRETGRAAAGVKLIN---LDEGETLVSLERVAEDESELSGASVIS 907


>gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
          Length = 898

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 446/897 (49%), Positives = 644/897 (71%), Gaps = 10/897 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K
Sbjct: 5   NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+A IDNPDI  D L++I+ GPDFPTG  ILG  GI++A+ TG+G+I+++G 
Sbjct: 185 NLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I ELV+EKRI  I DLRDES++ G RV IE
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  V+LNQ+   T L++ FS+N + L+  KP+  +L+ I+  F+ +R+EV+ RRT
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +K++I+
Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ D S +I  +    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L 
Sbjct: 425 LVAD-SKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL ++K  L  +K +L  PR+T I     + + ED I +EDMVVTV+  GY+KRV 
Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGR G  +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++MP PE++     L ++FAT  GN+RRN LSDF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-K 731
           KIAM LD  D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L+ +
Sbjct: 664 KIAMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSE 723

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVISM++++  + D + +  Y+K    +R L+  D   I     +  V+  +S++   
Sbjct: 724 EDQVISMSVLIAMEVDSETKDLYLKVPLEKRLLVKEDG-VINQGVANMLVDLGLSQDVFM 782

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +   E+FILTV+E GFGKRTS+Y++R + R G G+     ++ N  G +++ F V  ND
Sbjct: 783 SMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESND 840

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESEIVD 904
            I+L+++KG LIR+ VN+IRI  R+T+GV +F T K E+VVSV ++     ES+I D
Sbjct: 841 HIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDIDD 897



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E   ++L  KE  ++TV+  G+ KR    ++R   R GKG     + + + I  L   F 
Sbjct: 517 ETDVEDLIPKEDMVVTVTMSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNL---FV 573

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           VN +  ++  S+ G + ++ V ++ +    ++G   V IF  +++E + SV  + E++  
Sbjct: 574 VNTHTSVLFFSNIGRVYKLKVYKLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQED 633

Query: 904 DE 905
            E
Sbjct: 634 TE 635


>gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 902

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/909 (43%), Positives = 568/909 (62%), Gaps = 34/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +          +D +  +G     Y LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R    R + 
Sbjct: 660 SEFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG-RTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI + KG++V+S+ +   A                    I  +++E  + +   + +
Sbjct: 719 GVRGIRMPKGEEVVSLIVSDPAGG------------------IEIESDEDAADEVVDTTD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  +            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--S 900
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+     
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 901 EIVDEAEST 909
           E+ D  E  
Sbjct: 879 EVDDVMEEA 887



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 106/277 (38%), Gaps = 41/277 (14%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PLS +    R  +G+  + + D D +  + 
Sbjct: 628 ERVQAVLPVREYADNRYVFFATRNGTVKKTPLSEF--AFRLARGKIAINLDDGDALVGVA 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP------ 635
           +      VL F+S G   +     +      A G   +  + + +GE + +++       
Sbjct: 686 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATG---VRGIRMPKGEEVVSLIVSDPAGG 742

Query: 636 --FPEDESSWNN---------------------LYVVFATKHGNVRRNKLSDFIQINRS- 671
                DE + +                       Y++ AT++G  +R  L+++ +  R  
Sbjct: 743 IEIESDEDAADEVVDTTDGADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGT 802

Query: 672 -GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G I ++      +++        +++LL +  G  VR   S I    GRN+ GV  I L
Sbjct: 803 QGVIGIQTTERNGKLVRAVLLGATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRL 861

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +KG+++     V   DA  DE    M+  S     ++
Sbjct: 862 SKGEKL---QAVERLDASLDEVDDVMEEASVSAESMA 895


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/889 (43%), Positives = 548/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R A+A VILN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ V+
Sbjct: 303 VVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L II++EL  +K+  +  RRT IV  GL  +EDED I RE++V+T++H GYV
Sbjct: 457 ILANEERVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIERENIVITLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P    +     LY+ F TK G  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVSTFDEE---LYLFFTTKQGVSKRTALSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +  I++ TK G  +RFP   +R    R + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQMG-RTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+E G+GKRT + ++R+ +R GKG++   ++  N  G LV V    
Sbjct: 708 --------DSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATR 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + +++++  G LIR+ +N+I    R T+GV +   +  E V +V  +
Sbjct: 758 GEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806


>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
 gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A
 gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
 gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans]
 gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
          Length = 833

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/888 (42%), Positives = 552/888 (62%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  L+ D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NPDI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     +++I+V EIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKTEIE-EHHGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++A +  V+
Sbjct: 302 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L   I E   
Sbjct: 413 -----------------FELSYEQAQAILDMRLQRLTGLERDKIEAEYKELIERIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++ELL +K++ +  R+T I       EDED I R+++V+T++H GY+K
Sbjct: 456 ILADHEKVLDIIREELLELKEKYNDERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q+RGG+G  G+   ++DFV  LF  ++H ++LFF++ G VY+ K + +P  
Sbjct: 516 RLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L + Q E I+TI+P    E    + Y+ F TK G  +R +LS F  I 
Sbjct: 576 GRTAKGIPIINLLQIEQDEYISTIIPI---EEFTEDHYLFFMTKDGIAKRTQLSSFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   DE+  V     + ++++ T+ G  +RF  + +R+   R + GV+GISL
Sbjct: 633 RGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVRLMG-RTATGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+ M IV                                                
Sbjct: 692 TGDDHVVGMDIVEDG--------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+EKGFGKRT   D+RI  R GKGI+  ++++ N  G LV++  V+ 
Sbjct: 707 --------QDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKN--GPLVSLKVVSV 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  +++++  G +IR+ V +I +  R T+GV +   A+ E V +V R+
Sbjct: 757 DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVARV 804



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 106/252 (42%), Gaps = 15/252 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +    +  +  ++  G  KR  LS +   RRG  G   + +R+ D +  + 
Sbjct: 594 EYISTIIPIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRG--GLFAINLREGDELHGVR 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +    V+  +  G   +     + +    A G   +  +SL   + +  +    + + 
Sbjct: 652 LTNGDKEVIVGTRQGMAIRFHETDVRLMGRTATG---VKGISLTGDDHVVGMDIVEDGQD 708

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
                 V+  T+ G  +R  ++D+    R GK        +    ++S++  + ++D+++
Sbjct: 709 ------VLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKNGPLVSLKVVSVDHDLMI 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +  I V  GR + GV  I +A+G++V ++A V   D + DE     +  
Sbjct: 763 ITASGIIIRLHVKDISV-TGRITQGVTLIRVAEGEEVATVARVDIEDDELDEDESIEEER 821

Query: 759 SAQRRLISGDTE 770
             +  +  G+ E
Sbjct: 822 DDRSEVEQGENE 833


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/885 (42%), Positives = 540/885 (61%), Gaps = 86/885 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+  +K + K 
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I G+VM  +HPHG+ AIYD++ R+AQD+S R  LIEG GNFGS+DGDPPAA RYTE R
Sbjct: 67  AGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ K+TVDF PNYD   +EPV+L A+ PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GEV+DG + +IDNP++  D LM++I+GPDFPTGA I+GR GI+ AY TGRGSI IR  +
Sbjct: 187 IGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIKIRAQA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  +  R  I+V EIP+QVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL
Sbjct: 247 TIETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +VILNQLY++T +Q  F + M+AL   +P+   L  +L  ++  +++V+ RRTK
Sbjct: 307 KKDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKDVITRRTK 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA  RAH++ GL IA+A+LDEV++IIR S   E A++ L+                
Sbjct: 367 YELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTN-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ  AI+E+RL  LTGL  + +  E   L  +I     +L+  
Sbjct: 413 ------------FNLTEVQAEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++LGIIK EL  VK +   PRRT I  E   D + ED I  E MVVT+++ GY+KR+ L
Sbjct: 461 KKVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISL 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+QRRGGKG + +  ++EDFV  LF+ STH  +LFF++ G  Y+ KV  +P     A
Sbjct: 521 DTYRSQRRGGKGITAMGTKEEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  L+N+L ++ GE +TT++P  +        Y+  ATK G V++  LS++    R G 
Sbjct: 581 KGTPLVNLLYISSGEYVTTVIPIKD---FTEEAYLFMATKQGVVKKTNLSEYDTSRRDGI 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ LD  DE+++VE      +I+L+T+ G  +RFP   +R    R + GV+GI+L   D
Sbjct: 638 NAINLDESDELVAVELTHGREEIILSTREGMAIRFPEEDVRPMG-RTARGVKGITLTGDD 696

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++M                                                     ++
Sbjct: 697 SVVNM-----------------------------------------------------DV 703

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+  G+GKRT+  ++R   R GKGI     S  N  G +V    V D+D+I
Sbjct: 704 VKDGGDLLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRN--GPVVGALVVKDDDEI 761

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++S +G +IR+   ++    R T+GV +   A+++ +V+V ++ 
Sbjct: 762 MMISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKVA 806


>gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
 gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
          Length = 923

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 548/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G    +    D  I          D +     +       R     
Sbjct: 718 NE-------YWEKSG----NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890


>gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 912

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/922 (40%), Positives = 550/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +   +   +   +AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNGEAEDADSE---TSDGIEDENADSENALPGGKYGVRPSGRGSGG 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 768 MRGMRLPADGKIVSLITFAPEAGESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
 gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/907 (43%), Positives = 553/907 (60%), Gaps = 67/907 (7%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +  +  +  + +  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ 
Sbjct: 1   MADTPTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+SLR  L++GQGNFGSVDGD 
Sbjct: 61  NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAV
Sbjct: 121 AAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HN+ EV+ GC+A +DN DI +D LM+ I GPDFPTGA+I GR GI  AY TG
Sbjct: 181 GMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAIINGRAGIVQAYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R  + +   S  ++ I+V EIPYQ+NKA ++E+IAELV+EK+I  I +LRDESD
Sbjct: 241 RGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G RVVIEL+RG   DV+LN LY  T+LQS+  +NMVAL   +P+   L  ++ AFV  
Sbjct: 301 KDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQPKVLNLKEMIAAFVRH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT YLL KAR+R HVL GLA+A+AN+DEV+ +I+ SP    AR  L+  +W  
Sbjct: 361 RREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAWAP 420

Query: 425 SDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            D+  +++    ++             +G  +LS  Q +AIL+LRL RLTGL  + +  E
Sbjct: 421 GDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLLQE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
                 EI + LDIL    RL  +I++EL     E    R T I +   D+  ED I  E
Sbjct: 481 YADKLTEIADYLDILEDSERLKRVIREELEETVAEFGDERMTEITDSAHDLTVEDLITEE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D VVT+SH GY K  PL+ Y+AQRRGG GRS   ++DEDFV  L I STH+++L FS+LG
Sbjct: 541 DRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHSTILCFSNLG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  +V+ +P+ S  +RG+ ++N+L L+ GER+T+I+P    E+     Y+  AT  G 
Sbjct: 601 KVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYEAGS---YIFMATAKGT 657

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++ +++ F +    G  A++L+  D ++         D++L +  G+ VRF  +A+R  
Sbjct: 658 VKKTEMTQFARQRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFNEAAVRPM 717

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R + GVRGI L     +IS+ I                                    
Sbjct: 718 G-RTAKGVRGIRLGGDYSLISLII------------------------------------ 740

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              ++  ILTVSE G+GKR+ + DF +  R   G+ A   S  N
Sbjct: 741 -----------------PKQQGRILTVSENGYGKRSETADFPVRGRGTMGVIAMSTSDRN 783

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             GALV    V D D+I+L+S++GT +R  ++EI +  R T+GV +  T  +E +VS+ R
Sbjct: 784 --GALVGAEQVWDGDEIMLISNQGTAVRTRIDEISLQGRNTQGVRVIRTRDEESLVSISR 841

Query: 897 IRESEIV 903
           I E +  
Sbjct: 842 IAEDDDA 848


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/889 (41%), Positives = 550/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  ++ D+ KDT+D+R NYDGS +EP+V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  +P+I +  LM+ I GPDFPT  +I+GR+GI+ AY +G+GSI 
Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIVGRSGIRRAYESGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  +  +E I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 MRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L  ++  ++ V+
Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ +IR S   + AR  LM+          
Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMEN--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL RD I NE   L   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLERDKIENEYQELVKLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV G ++ +EDED I RE++++T++H GY+
Sbjct: 457 ILADEEKVLEIIREELNEIKERFNDERRTEIVAGGIEQIEDEDLIPRENIILTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G  +K K + +P 
Sbjct: 517 KRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +++GE +  ++     E   ++ Y+ F TK G  +R  +SDF  I
Sbjct: 577 FSRTAKGIPIINMLGVDKGEWVNAMIRI---EEFVDDWYLFFTTKQGISKRTPVSDFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+      DI++ T+ G  +RFP + +R    R + GV+GI+
Sbjct: 634 RTNGLIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSMG-RTATGVKGIN 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+   D                                           
Sbjct: 693 LDSEDIVVGMEILEEKDD------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKGFGKRT + ++RI  R GKG++  +++  N  G L++V  V 
Sbjct: 711 -----------VLVVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRN--GELISVKAVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + ++L++  G LIR+ VN+I I  R T+GV +    ++  V +V ++
Sbjct: 758 GEEDLMLITAHGVLIRMDVNDISITGRNTQGVKLIRLDENSSVATVAKV 806



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 15/252 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M   +  V +  +   +  G  KR P+S +   R    G   + +R+ D +  + 
Sbjct: 596 EWVNAMIRIEEFVDDWYLFFTTKQGISKRTPVSDFANIR--TNGLIAINLRENDELISVK 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +  G + +     +      A G   IN+      E I   M   E++ 
Sbjct: 654 LTDGSKDIIIGTQKGMLIRFPETDVRSMGRTATGVKGINL----DSEDIVVGMEILEEKD 709

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
                 V+  T+ G  +R    ++    R GK        D   E++SV+  T E D++L
Sbjct: 710 D-----VLVVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRNGELISVKAVTGEEDLML 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  ++ I +  GRN+ GV+ I L +   V ++A V   +   ++    +   
Sbjct: 765 ITAHGVLIRMDVNDISI-TGRNTQGVKLIRLDENSSVATVAKVEKDEEKEEDIPVDLTEE 823

Query: 759 SAQRRLISGDTE 770
           S+++       E
Sbjct: 824 SSEQAAEDSADE 835


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/889 (42%), Positives = 552/889 (62%), Gaps = 88/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     +  ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DTPNSQVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDG+ +EPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+   PD+ +  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+V EIPYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 LRAKVEIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLQHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM +         
Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I +E +SL   I E   
Sbjct: 414 -----------------FNLSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  VK+  +  RRT IV G ++ +EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDKRRTEIVAGGIEQIEDEDLIPRENIVLTLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YRAQ+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +++ E +  I+P    E   ++ ++ F TK G  +R+ LS F  I
Sbjct: 577 FSRTAKGIPIINLLGVDKDEWVNAIIPV---EEFADDWFLFFTTKQGISKRSPLSSFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV       +I++ T  G  +RFP   +R    R + GV+GIS
Sbjct: 634 RNNGLIALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSMG-RTATGVKGIS 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+ G                                                      E 
Sbjct: 693 LSAG-----------------------------------------------------DEV 699

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E+   +  IL V++ G+GKRT + ++R+  R GKGI+  +++  ++ G+LV++  V 
Sbjct: 700 VGMEVLEDDSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNIT--DKNGSLVSMKAVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVE 895
             + ++L++  G LIR+ VN+I    R T+GV +    +  DE V +V 
Sbjct: 758 GEEDVMLITTGGVLIRMAVNDISTMGRNTQGVRLIRINEDADEAVSTVA 806


>gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640]
 gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica]
 gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06]
          Length = 912

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/922 (40%), Positives = 549/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +   +   +   +AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNGEAEDADSE---TSDGIEDENADSENALPGGKYGVRPSGRGSGG 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 768 MRGMRLPADGKIVSLITFAPEAGESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
 gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
          Length = 923

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 548/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G    +    D  I          D +     +       R     
Sbjct: 718 NE-------YWEKSG----NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890


>gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
 gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
          Length = 935

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/936 (41%), Positives = 554/936 (59%), Gaps = 108/936 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   REVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF  NYDG+ + P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A+ID+  +  D LME I+GPDFPT  +I GR GI  AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      +E I+VTEIPYQVNKA ++EKIAELV++K+I  I +LRDESD++G RVVI
Sbjct: 246 AEIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG +A+V+LN LY+ T ++S+F +N VAL   +P+   L  +L AF+  R EVV RR
Sbjct: 306 ELRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR++AH+L GLA+A++N+D V+ +I+ SP+   A+ +L+ + W   D+  +++
Sbjct: 366 TVFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLE 425

Query: 433 LID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                        D  Y +  DG  +LS  Q +AIL+LRL +LTGL R+ + N+   L  
Sbjct: 426 RAGGENAARPDGLDEQYGL-VDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLE 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L IL +  RL+ +I++EL +V++E    RR+ IV    D   ED I  E +VVT+
Sbjct: 485 QIAELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTL 544

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S+ GY K  P+  YRAQ+RGG+G+S   ++DED+V  L +  TH ++L F+  G V+  +
Sbjct: 545 SNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDAGKVFWLR 604

Query: 603 VWRLPIGSPQARGKALINILS-LNQGERITTIMPFPED---------------------- 639
            + LP G   +RGK ++N+L  L   ERIT I+    +                      
Sbjct: 605 TFELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEEIVDADDVID 664

Query: 640 -----------------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                              +    ++  AT  G V+R  L++F +   SG IA+KL   +
Sbjct: 665 AVDDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGE 724

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +++V       DI+L  + G+ VRF  S +RV + R + GVRGI LA+G  +IS+ +  
Sbjct: 725 HLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDLISLIV-- 781

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                                +   ILT
Sbjct: 782 ---------------------------------------------------PEENGQILT 790

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            SE G+GKRT   D+    R G+G+ A  +++ N  G LV    V   + I+L+S++GTL
Sbjct: 791 ASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTL 848

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +R  VN++  + R T+GV +   A  E +  +  I 
Sbjct: 849 VRTGVNQVSTSGRNTQGVRLIRLADGEALCGLATIP 884



 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 117/274 (42%), Gaps = 15/274 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E   D+E     V    +   +  G VKR  L+ +   R    G   V +++ + + ++ 
Sbjct: 673 EVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPRSS--GLIAVKLQEGEHLVNVA 730

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I   H  ++  +  G   +    ++ + S  ARG   +  + L +G  + +++  PE+  
Sbjct: 731 ITQGHEDIMLVARNGKAVRFHQSKVRVMSRLARG---VRGIKLAEGVDLISLI-VPEE-- 784

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILL 698
              N  ++ A++HG  +R  L+D+    R G   IAM ++    E++       E DI+L
Sbjct: 785 ---NGQILTASEHGYGKRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIML 841

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  ++ +   +GRN+ GVR I LA G+ +  +A +   +   +E     + +
Sbjct: 842 ISNQGTLVRTGVNQVST-SGRNTQGVRLIRLADGEALCGLATIPELEGVEEEEGEDGEVI 900

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
             +    + +++     +         +   C +
Sbjct: 901 EGEASPQAPESDASDDAEEYPVGASLAARFTCDQ 934


>gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4]
 gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
          Length = 832

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/903 (44%), Positives = 552/903 (61%), Gaps = 93/903 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR+ 
Sbjct: 10  VNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARVV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R+ + 
Sbjct: 70  GDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMYQL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL DL K+TV+  PNYD S QEP+VL A++PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 130 AHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLSEV 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE- 257
           +DG +AVI NP +  + L+E+I GPDFPT   I GR GI +AY TGRG I +R  + IE 
Sbjct: 190 IDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIYGREGIVSAYGTGRGIIQMRARAMIET 249

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +R+ IVVTEIPYQVNKA ++EKIAELVREK+I  I+DLRDESDR+G R+VIELK+ 
Sbjct: 250 HKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRIVIELKKD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R E+V RRT + L
Sbjct: 310 ENPQILLNHLYKQTQMQSSFGIIMLAIVNNRPRVLTLRETINYFIDHRREIVTRRTIFDL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM R                 
Sbjct: 370 KKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSR----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE+Q +AIL++RL RLTGL RD I  E   +   I    +IL+S + +
Sbjct: 413 ---------FGLSEIQAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETEI 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L II  EL  +KD+    RRT IV    ++  ED IV EDMVVT+SH GY+KR  +++YR
Sbjct: 464 LNIIVGELRELKDKFGDKRRTEIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTLYR 523

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG++G+  ++EDFV  LFI S+   ++FF+  G VY  KV+ +P      RGKA
Sbjct: 524 AQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKA 583

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L+L+  E+IT I+P  E  +   + +++ AT++G V++  L ++      G IA+ 
Sbjct: 584 IVNLLNLSTNEKITAILPVKEFTA---DKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVN 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  D++++V       D+LL +K G+ +RF  S +R    R S GVRG++L   D VI 
Sbjct: 641 LDEGDKLITVALTDGRQDVLLASKNGKSIRFKESDVRTVG-RVSRGVRGMTLEDDDVVIG 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I+     D                                                  
Sbjct: 700 MEILNENFTDS------------------------------------------------- 710

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             + TV+E GFGKRT   ++R  +R GKG+     ++ N  G +V +  V D + ++L++
Sbjct: 711 -TLFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERN--GCVVDIKQVTDENDLMLIT 767

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----------SEIVDEAE 907
           D+G ++RVPV    I  R T+GV +  T  +ER+V+V R+ E          ++   EAE
Sbjct: 768 DQGKILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVARLAEKEDEEESEETADNGPEAE 827

Query: 908 STE 910
           + E
Sbjct: 828 NVE 830


>gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
          Length = 916

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/922 (40%), Positives = 554/922 (60%), Gaps = 32/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            RSW +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +   +   +   +AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNGEAEDADSE---TSDGIEDENADSENALPGGKYGVRPSGRGSGG 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 768 MRGMRLPADGKIVSLITFAPEAGESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E  DE+E ++
Sbjct: 883 ETLVSLERVAEDE--DESELSD 902



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 111/270 (41%), Gaps = 40/270 (14%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D +    
Sbjct: 640 EKVSAILAVREFPEDQYVFFATAQGIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAA 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW-----------------------------RLPIGS-- 610
                  ++ FS+LG   +   +                              LP G   
Sbjct: 698 QTGGSDDIMLFSNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYG 757

Query: 611 --PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             P  RG   +  + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ + 
Sbjct: 758 VRPSGRGSGGMRGMRLPADGKIVSLITFAP-EAGESGLQVLTATANGYGKRTPIADYSRK 816

Query: 669 NRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + GV+
Sbjct: 817 NKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVK 875

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYM 755
            I+L +G+ ++S+  V   + + +     +
Sbjct: 876 LINLDEGETLVSLERVAEDEDESELSDASV 905


>gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 808

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/895 (44%), Positives = 561/895 (62%), Gaps = 88/895 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + G ++NK Y 
Sbjct: 2   ESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDA+ RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE
Sbjct: 62  KSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL DL K+TVDF PNYDGS QEP+VL AR PN+L+NG  GIAVGMATNIP 
Sbjct: 122 VRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV +  +A I NP I L  LM I+ GPDFPT   I G  GI  AY TG+G I +R 
Sbjct: 182 HNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGSDGIAEAYRTGKGLIRLRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + +E+  G RE I++ E+PYQVNK  ++E+I ELV++K+I  I D+RDESDR+G RVVI
Sbjct: 242 RTFLEQ-RGGREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRVVI 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L++   A  ILNQL+ +T++Q  + +N+VA+   +PE  +L  +L  F+  R EV+VRR
Sbjct: 301 QLRKDELAQPILNQLFAHTNMQVTYGINLVAIVNNRPELLSLKDLLTEFLKHRREVIVRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KA +RAH+L GL IA+ +LD+++ +IR + +P TAR +L++R            
Sbjct: 361 TLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVER------------ 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ +AILE+RL RLTGL R  I +E   L  +I    +IL+
Sbjct: 409 --------------FTLTEVQAQAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILA 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + + +  +I+ +L+ ++D    PRRT I+    ++  ED I  EDMVVTVSH GY+KR P
Sbjct: 455 NEALVYQLIEADLIDLRDRYGDPRRTEIIPETAELTLEDLIPDEDMVVTVSHQGYIKRNP 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L++YR+QRRGGKGR+G+ ++++DFV+ L+I STH   L FS+LG +Y  KV  +P+GSP 
Sbjct: 515 LNLYRSQRRGGKGRTGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPS 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA++N+L+    E++TTI+P  E        Y+V ATK G +++ +L +F +    G
Sbjct: 575 ARGKAIVNLLNFGSQEKLTTILPIRE---FVPEHYLVMATKRGIIKKTELMNFSRPRSGG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA  LD  DE++SV       ++ L T LG+ +RF    +R    R++ GVRG+++A+ 
Sbjct: 632 LIACTLDEGDELVSVALTDGNKEVFLGTSLGKIIRFAEQDVRDMG-RSARGVRGMTVAED 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++ M I+    A                                              
Sbjct: 691 DCIVGMEILSAEGA---------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILTV+  G+GKRT   ++R+  R G G+ A  ++  N  G +V +  V ++D+
Sbjct: 705 -------ILTVTANGYGKRTRHEEYRLQKRGGSGLLALRITDRN--GPVVGIIQVTEDDE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           I+L++D+G +IR+PV  I +  R T+GV +  T  +ERVVS+ R+ E    DE E
Sbjct: 756 IMLITDRGKIIRLPVTGISLIGRVTQGVKLIDTEPEERVVSIARLAEKG--DEGE 808


>gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
 gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
          Length = 843

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/916 (38%), Positives = 522/916 (56%), Gaps = 90/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  +   I  V I  EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D +    A+ME I+GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +   + EV+VRRT+YLL KA++RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLME--------------------------LLDVDEIQADAILGMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNGDDELLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+ KRT   D+ +  R GKG+      K
Sbjct: 722 -----------------------TFLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDK 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V+D+D++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 --KRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRESEIVDEAESTE 910
            R  +      AE+T+
Sbjct: 817 ARNADEPEELAAETTD 832


>gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/922 (40%), Positives = 550/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++++DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            RSW +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +   +   +   +AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNGEAEDADSE---TSDGIEDENADSENALPGGKYGVRPSGRGSGG 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 768 MRGMRLPADGKIVSLITFPAEAGESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
 gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
          Length = 898

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/897 (49%), Positives = 646/897 (72%), Gaps = 10/897 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K
Sbjct: 5   NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+A IDNPDI  D L++I+ GPDFPTG  ILG  GI++A+ TG+G+I+++G 
Sbjct: 185 NLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I ELV+EKRI  I DLRDES++ G RV IE
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  V+LNQ+   T L++ FS+N + L+  KP+  +L+ I+  F+ +R+EV+ RRT
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +K++I+
Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ D S +I  +    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L 
Sbjct: 425 LVAD-SKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL ++K  L  +K +L  PR+T I     + + ED I +EDMVVTV+  GY+KRV 
Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGR G  +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++MP PE++     L ++FAT  GN+RRN LSDF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-K 731
           KIAM LD  D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L+ +
Sbjct: 664 KIAMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSE 723

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVISM++++  + D + +  Y+K +  ++RL+  +   I     +  V+  +S++   
Sbjct: 724 EDQVISMSVLIAMEVDSETKDLYLK-IPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFM 782

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +   E+FILTV+E GFGKRTS+Y++R + R G G+     ++ N  G +++ F V  ND
Sbjct: 783 SMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESND 840

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESEIVD 904
            I+L+++KG LIR+ VN+IRI  R+T+GV +F T K E+VVSV ++     ES+I D
Sbjct: 841 HIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDIDD 897



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 6/122 (4%)

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E   ++L  KE  ++TV+  G+ KR    ++R   R GKG     + + + I  L   F 
Sbjct: 517 ETDVEDLIPKEDMVVTVTMSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNL---FV 573

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           VN +  ++  S+ G + ++ V ++ +    ++G   V IF  +++E + SV  + E++  
Sbjct: 574 VNTHTSVLFFSNIGRVYKLKVYKLPLGDPTSRGRSLVNIFPLSENEVITSVMPLPENQED 633

Query: 904 DE 905
            E
Sbjct: 634 TE 635


>gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
 gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
          Length = 843

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/916 (38%), Positives = 522/916 (56%), Gaps = 90/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  +   I  V I  EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D +    A+ME I+GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +   + EV+VRRT+YLL KA++RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLME--------------------------LLDVDEIQADAILGMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNGDDELLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+ KRT   D+ +  R GKG+      K
Sbjct: 722 -----------------------TFLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDK 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V+D+D++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 --KRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRESEIVDEAESTE 910
            R  +      AE+T+
Sbjct: 817 ARNADEPEELAAETTD 832


>gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/922 (40%), Positives = 550/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            RSW +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +   +   +   +AD +  +   K+        SG 
Sbjct: 718 NE-------YWEKSGNGEAEDADSE---TSDGIEDENADSENALPGGKYGVRPSGRGSGG 767

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +    +   V          E  L+   +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 768 MRGMRLPADGKIVSLITFAPEAGESGLQ---VLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102]
 gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102]
          Length = 923

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 547/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D     +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G    +    D  I          D +     +       R     
Sbjct: 718 NE-------YWEKSG----NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890


>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 815

 Score =  801 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/889 (40%), Positives = 538/889 (60%), Gaps = 81/889 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  + I DE++NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K + K 
Sbjct: 7   KIMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDKPHKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GEV+GKYHPHG+ A+YDA+ R+AQ++S R  L++G GNFGSVDGD  AA RYTE R
Sbjct: 67  ARLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L ++ K+T+DFRPN+D + +EP VL AR+PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MSKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  V +IDNP+ +   +M+ I GPDFPTG +ILGR GI++AY TGRG I IR  +
Sbjct: 187 LREVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLILGREGIRSAYRTGRGIIKIRAKT 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    + +IVVTE+PYQVNKA  +EKIA+LVREK++  I DLRDESDR G R+VIEL
Sbjct: 247 QIERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR  +A V+LNQ++++T LQ  F + M+AL   KP+   L  +L  ++  +++V+ RRT+
Sbjct: 307 KRETNAQVLLNQMFKFTQLQQTFGIIMLALVNNKPQVLNLREMLGHYLEHQKDVITRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +RAH+L GL IA+ NLD V+++IR S N E AR  LM+               
Sbjct: 367 FDLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLMEN-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+++Q +AIL++RL +LTGL R  + +E   L  +I    +IL++ 
Sbjct: 413 ------------FGLTQIQAQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKEILANE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +  IIK E+  ++ +    RRT IV    D   ED I  EDMVVT++H GY+KR+P++
Sbjct: 461 RLVYQIIKDEMGEIRKKYGDDRRTAIVIDEDDFAVEDLIAEEDMVVTLTHNGYIKRLPVT 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q+RGG+G +G+  + +DFV  +F+ STH  +  F++ G +Y++KV+ +P      R
Sbjct: 521 TYRVQKRGGRGITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTR 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L++  GE +T ++P  +  +     ++   T+ G V++  L +FI   + G I
Sbjct: 581 GVAIVNLLAVEPGEYVTAVIPVKDFNA---GQFMFMCTRQGYVKKTPLEEFINARKGGLI 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     + ++ L T  G  +RF    +R    R++ GVRGISL  GD+
Sbjct: 638 ALSLAENDELIDVRLTNGKYEVALVTYHGLSIRFAEENVRSMG-RSARGVRGISLGPGDK 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ ++                                                 +  +
Sbjct: 697 VMSLEVLPP-----------------------------------------------EMEQ 709

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ++T  EKGFGKRT   ++R   R GKGI    + + N  G ++    V   D+++
Sbjct: 710 ETEMLVVT--EKGFGKRTPFSEYRAQTRGGKGIYTIRILEKN--GPVMGAKMVRPGDEVM 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++ +G +IR    +I I  R T+GV +    + +RVVS+ R+   E  
Sbjct: 766 MITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARVVVEENE 814


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  801 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/891 (42%), Positives = 549/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   I    I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EEKFSQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S+R +L+EG GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NP+I    LM+ I+GPDFPT A ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHNLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYILGRSGIRQAYTTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE    ++ +IVV E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRAKTTIE-EHNNKARIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN LY++T+LQS F +NM+A+   +P+  TL  +L  ++  + EVV
Sbjct: 302 VVIELRRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DEV+ +IR S + E AR  L+ R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I +E N L  +I E  +
Sbjct: 413 -----------------FGLSLEQAQAILDMRLRRLTGLEREKIEDEYNELLQKIAEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +++     RRT I  G   + DED I +E++V+T++H GY+K
Sbjct: 456 ILANEQLVLKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +D DFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++   E E   +N Y+ FATK G V++  + D+I I 
Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVI---EVERFDDNKYLFFATKQGIVKKTPIEDYINIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      ++++ T  G  +RFP S +R    R + GV+GI+L
Sbjct: 633 KGGLIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFPESDVRSMG-RAATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD VI M                                                   
Sbjct: 692 DEGDSVIGM--------------------------------------------------- 700

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++ +  Q +L V+  G+GKRT   ++R  +R GKGI+  +V++ N  G +V +  V D
Sbjct: 701 --DVVVPGQDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKN--GTVVGLKVVKD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GTLIR  +  I    R T+GV + +  +D+ V +V R  +S
Sbjct: 757 EEDLMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTDKS 807


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  801 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/887 (42%), Positives = 532/887 (59%), Gaps = 86/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E++   +  +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+GM +MG+  N 
Sbjct: 8   EQQIGRVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNA 67

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K A I GEV+  YHPHG++A+YDAL RM Q +++R  LI+GQGNFGSVDGD  AA R
Sbjct: 68  KYRKSAGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMR 127

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LL D+ K TVDF PNYD S +EP VL AR PN+LVNG  GIAVGMATN
Sbjct: 128 YTEARLAPIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATN 187

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEVVD  V +IDNP+  ++ L+E + GPDFPTG +ILGR GI  AYATGRG IV
Sbjct: 188 IPPHNLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIILGREGILAAYATGRGRIV 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+T   R  I+VTE+PYQVNKAA++E+IAELV+  R+  I DLRDESDR G R
Sbjct: 248 VRARAHIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           +VIELKR A    +LN L+++T LQ+ F VNM+AL     P   TL  +L+ ++  R++V
Sbjct: 308 IVIELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQV 367

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L +A  RAHVL GL IA+ +LDEV+  IR + + E AR++LM R        
Sbjct: 368 IRRRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLMAR-------- 419

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL+++L RL  L R  I +E   L   I E  
Sbjct: 420 ------------------FNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELR 461

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+  +++L ++++ELL +K+    PRRT+I E   ++ DED + R D++VT++  GYV
Sbjct: 462 ALLADAAKILAVVRKELLELKERYGDPRRTQIQEASSEISDEDLVPRVDVIVTLTSRGYV 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     +R Q RGG+G +G+ +RDED +  + + STH S+LFF++ G V++   + LP 
Sbjct: 522 KRSTNGHFRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPD 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG  ++N L+L  GE +TT++P  +  ++    ++ F T+ G V+R +L +F  +
Sbjct: 582 VGRNARGLPIVNFLNLQPGEEVTTLLPVRDFSTA---TFLFFCTRQGRVKRVRLEEFSNV 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IAM LD+ DE+  V   +  ++++L T  GQ +RFP   +R    R + GV G+ 
Sbjct: 639 RASGLIAMSLDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMG-RQAGGVIGVR 697

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD VI+                                                   
Sbjct: 698 LDEGDAVIA--------------------------------------------------- 706

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E+   E  +L VS+ G+GKRTS  +FR   R G G+ A  V+     G + A     
Sbjct: 707 --AEVVRPEGDLLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPR--TGHVAAATVAR 762

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + D ++LVS +G +I VPV +I    R T+GV +    + + V SV 
Sbjct: 763 EEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASVA 809



 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 88/237 (37%), Gaps = 15/237 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+       +  DE    +   + + I+  T  G   R      RV   R   GV G+
Sbjct: 488 PRRTQIQEASSEISDE----DLVPRVDVIVTLTSRGYVKRSTNGHFRV-QHRGGRGVNGM 542

Query: 728 SLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           ++   D +  + +    D+        R+  +          +     I +  N    E 
Sbjct: 543 AVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARGLPIVNFLNLQPGEE 602

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             +    ++      F+   + +G  KR    +F  SN    G+ A  +   +E   L  
Sbjct: 603 VTTLLPVRDFSTA-TFLFFCTRQGRVKRVRLEEF--SNVRASGLIAMSLDAGDE---LAW 656

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V P + +D++ILV+  G  IR P +++R   R   GV+     + + V++ E +R  
Sbjct: 657 VRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDAVIAAEVVRPE 713



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 97/235 (41%), Gaps = 15/235 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VKRV L  +   R    G   + +   D +  + 
Sbjct: 601 EEVTTLLPVRDFSTATFLFFCTRQGRVKRVRLEEFSNVR--ASGLIAMSLDAGDELAWVR 658

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             S    V+  ++ G   +     +     QA G   +  + L++G+ +        +  
Sbjct: 659 PTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGG---VIGVRLDEGDAVIAAEVVRPEGD 715

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILL 698
                 ++  +++G  +R  L +F    R  SG IAMK+  R   + +     +E+ ++L
Sbjct: 716 ------LLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPRTGHVAAATVAREEDTVVL 769

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            ++ G+ +  P++ I    GR++ GV  + L +GD+V S+A+ L  +A    R  
Sbjct: 770 VSRRGRMILVPVAQI-PRQGRHTQGVSVMRLQEGDEVASVAVGLWGEALAPSRST 823


>gi|169830227|ref|YP_001716209.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
 gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 812

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/887 (43%), Positives = 541/887 (60%), Gaps = 86/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  + I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  +K + K 
Sbjct: 7   KIVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEV+ K HPHG+AA+YDAL R+AQD++ R  L++G GNFGS+DGD  AA RYTE R
Sbjct: 67  AYVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +L D+ K+TVDF PNYDG+ +EPVVL +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DG V + D+PD +L+ LM  I GPDFPTG  I+GR GI  AY TGRGSI +RG +
Sbjct: 187 LKEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIMGRHGIVEAYRTGRGSIKMRGHA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+  G R +IV+TE+PYQVNKA ++EKIA LVREK+I  I+DLRDESDR+G RVVIEL
Sbjct: 247 EFERV-GSRTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  + ++ LN LY++T LQ  F V ++AL   +P+   L  IL  ++  + EV+ RR +
Sbjct: 306 RREVNPEITLNLLYKHTQLQDNFGVILLALVDGQPQVLALKDILSHYLGHQREVITRRCR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L++A+ R H++ GL IA+A+LDEV++ IR S +   AR  LM                
Sbjct: 366 YELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMA--------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLT L RD + NE N L   I+    +L+  
Sbjct: 411 -----------GFGLSEKQAQAILDMRLQRLTALERDKLENEFNDLVAAIERLEALLADE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L ++K+ELL+V+D+   PRRT +V    D   ED I +ED V+ +++ GY+KR+P S
Sbjct: 460 QKILAVVKEELLAVRDKFADPRRTELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VYR+QRRGG+G +GV  + +DFV  LF+  TH  +LFF+  G VY+ KV+ +P    QAR
Sbjct: 520 VYRSQRRGGRGIAGVETKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N++ +  GER+T ++P  E      + ++   T+ G V++  L +F    R G I
Sbjct: 580 GTAVVNLIPVANGERVTAVIPVTEY---SGDAFLFMVTRKGIVKKTVLQEFDSARRDGLI 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++ V+    ++++LL T+ G  +RFP   +R    R + GVRGISL +GD 
Sbjct: 637 ALTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPMG-RTAHGVRGISLREGDM 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M IV   D                                                 
Sbjct: 696 VVGMDIVDPDDQ------------------------------------------------ 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L VSEKG+GK T   +FR+ +R G G+ A  VS  N  G LV++  V   ++I+
Sbjct: 708 -----LLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRN--GPLVSLSLVGRGEEIL 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +VS  G LIR+ ++EI    R  +GV +   A  + VV+V  I   +
Sbjct: 761 IVSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPGDAVVAVAWILPED 807



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 70/175 (40%), Gaps = 13/175 (7%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V ++  +    AD  + +  +K      R    D      +  D       ++   +
Sbjct: 443 NDLVAAIERLEALLADEQKILAVVKEELLAVRDKFADPRRTELVAED-------ADFNPE 495

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++ ++  G+ KR     +R   R G+GI   +    + +  L   F    +D
Sbjct: 496 DLIPQEDAVIILTNDGYIKRMPPSVYRSQRRGGRGIAGVETKVQDFVRHL---FVGKTHD 552

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            ++  +++G + RV V EI  A R  +G   V +   A  ERV +V  + E    
Sbjct: 553 YLLFFTERGKVYRVKVYEIPEAGRQARGTAVVNLIPVANGERVTAVIPVTEYSGD 607



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 15/232 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +  V+  G VK+  L  + + RR   G   + + + D + D+ 
Sbjct: 593 ERVTAVIPVTEYSGDAFLFMVTRKGIVKKTVLQEFDSARR--DGLIALTLDEGDELVDVK 650

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I    + VL  +  G V +    ++      A G   +  +SL +G+ +  +     D+ 
Sbjct: 651 ITDGKSEVLLGTRNGMVIRFPEGQVRPMGRTAHG---VRGISLREGDMVVGMDIVDPDDQ 707

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                 ++  ++ G  +   + +F   +R G     A        ++S+    +  +IL+
Sbjct: 708 ------LLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVSLSLVGRGEEILI 761

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +K G  +R  I  I  F  R + GVR + LA GD V+++A +L  D    E
Sbjct: 762 VSKSGILIRMKIDEIPQFG-RQAQGVRLMRLAPGDAVVAVAWILPEDPPQGE 812


>gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
 gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
          Length = 893

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/894 (44%), Positives = 550/894 (61%), Gaps = 68/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G +WNK Y K
Sbjct: 6   QEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL+DL KDTVDF PNYD + Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+NP+I +D LME I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAIINGRAGIIQAYRTGRGRIYVRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I++TEIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G RVVI
Sbjct: 246 ADIEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR    +V+LN L+  T LQS+F +N+VAL   +P+   L  ++  F+  R EVV RR
Sbjct: 306 EIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQPKILNLQQLIHHFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+RAH L G AIA+ N+DE++ +I+ SP+   AR  L+ R WN   +  ++D
Sbjct: 366 TIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQMLD 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  +LS  Q + ILELRL RLTG+  D I  E      EI
Sbjct: 426 RAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKLEEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E  DIL   +RL+ +I++EL +V +E    RRT I+E L D+  ED I  ED VVT+S+
Sbjct: 486 AEYQDILGDLTRLMTVIREELEAVVEEFGDERRTEIIESLHDLTIEDLITEEDRVVTISN 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PLS Y+AQRRGG G+S   ++DEDFV  L + STH ++L F++LG VY  KV+
Sbjct: 546 GGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFTNLGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+    +RG+ +IN+L L +GERI++I+P    E    + +V+ AT +G V++  L  
Sbjct: 606 QIPVAGRNSRGRPVINLLPLGEGERISSILPV---EEYSADKFVIMATANGTVKKTSLEQ 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +    G  A+ L   D ++       ++D++L +  G+ VRF  +  R    R S GV
Sbjct: 663 YSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSMG-RVSKGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G +VISM +                                            
Sbjct: 722 RGMRLPEGHEVISMVV-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      ++ F+LTV E G+GKRT   +F    R GKG+ A   S+ N  G LV  
Sbjct: 738 ---------PEEDGFLLTVCENGYGKRTKVDEFPTKGRGGKGMIAIQASERN--GPLVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +   D+I+L+SD+GT++R   +E+ +  R T+GV I      E +V + RI 
Sbjct: 787 TQLFAGDEIMLISDQGTMVRTRGDEVSVVGRNTQGVRIIRLKDSENLVRLARIA 840


>gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake]
 gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake]
          Length = 898

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/897 (48%), Positives = 636/897 (70%), Gaps = 5/897 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + SVSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K
Sbjct: 5   NNVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYD +  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+A IDNP+I  D L+ I+RGPDFPTG  ILG  GI++A+ TG+G+I+++G 
Sbjct: 185 NLGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I ELV+EK+I  I DLRDES++ G RV IE
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  V+LNQ+   T L++ FS+N + L   KP+  +L+ I+  FV +R EV+ RRT
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTTFSINTLVLENNKPKVMSLLDIISTFVEYRREVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + ++++I+
Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ D+  ++  D    L+ VQ ++ILE++L RLT L ++ +  +L S+   I++  ++L 
Sbjct: 425 LVADTK-SLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELLK 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL +IK  L+ VK +L  PRRT I     + + ED I +EDMVVTV+  GY+KR  
Sbjct: 484 NKEALLKLIKDGLIDVKTKLAVPRRTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRAK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGR G  +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++M  P++     +L +VFAT  GN+RRN L+DF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNALADFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAM LD  D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+  
Sbjct: 664 KIAMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSQ 723

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM+I+L  D   +++  Y+K    +R  +  +    T +    +  G + ++    
Sbjct: 724 DNVISMSILLAMDIGSEKKDLYLKVPLDKRIAVKEEGFIGTGIVKILADLG-LDQDTFMT 782

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA FPV  ND 
Sbjct: 783 MVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTRN--GNVVASFPVESNDH 840

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           I+L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV +I +++   E +  
Sbjct: 841 IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKIIDAKDDSEIDDD 897


>gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
 gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
          Length = 915

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/920 (41%), Positives = 558/920 (60%), Gaps = 36/920 (3%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             S+D +  K   +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ 
Sbjct: 2   THSNDHQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELK 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
             WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGSVDGD 
Sbjct: 62  NNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDA 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K AH +L D+ ++TV+F  NYDGS QEP+VL  R+P +LVNG  GIAV
Sbjct: 122 AAAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL + +  C+ ++  P+ D++ L++II+ PDFPTGA I G TG++  Y TG
Sbjct: 182 GMATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIYGLTGVRAGYQTG 241

Query: 245 RGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           RG +VIR  +H+E    SG+RE I+V EIPYQVNKA ++EKI ELVREK I  IA+LRDE
Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G R+VIELKR  +A+VILNQLY+ T LQ  F +NMVAL   +P    L  IL  F+
Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQPRLLNLKQILSEFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EVV RRT + L KAR   H+  G A+A++N+DE++ +I+ S + E AR  L+ R+W
Sbjct: 362 RHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRAW 421

Query: 423 NASDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            +S + +++   D             +  + +DG  +LS+ Q RAIL + L  LTGL +D
Sbjct: 422 QSSLVSEMLGRSDLDLTQARPEWLPENRGLQADG-YWLSDEQARAILRMSLRNLTGLDQD 480

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDE 530
           +I  E   L   I + LDIL+   R+  II+ EL+ +K +    RR+ I   G  D+ DE
Sbjct: 481 EIVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADE 540

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I   DMVVT++H GY+K  P S Y+AQRRGG+G+     +DEDF+  LFI +TH  ++
Sbjct: 541 DLIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLM 600

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++LG  +  KV+RLP G   +RG+ + N++ L++ E+++ I+P  E      N YV F
Sbjct: 601 CFTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVRE---FPENEYVFF 657

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++ +LS F  ++  G  A+ L   D ++     +  +DI+L + LG+ +RF  
Sbjct: 658 ATALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKALRF-- 715

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +         +         + D  +   +    DAD +       +        SG   
Sbjct: 716 NEYWAGKADAA--------DEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSGGLR 767

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +   +N   V   ++++ C         +LT +  G+GKRT   D+    + G+G  A 
Sbjct: 768 GMRLPENGRIVSLLVAQKNC------GLQVLTATANGYGKRTPIDDYPRKGKGGQGNIAI 821

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           +  + N  G LVA   V+ ND ++L++  G LIR  V ++R   R   GV + +  +   
Sbjct: 822 NTGERN--GDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVKLINLDEGTT 879

Query: 891 VVSVERIRESEIVDEAESTE 910
           +VS+E + ES+  D+A+ TE
Sbjct: 880 LVSIEPVVESDDADDADETE 899


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/889 (43%), Positives = 547/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRILF M + G   +K
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR  G+V+GKYHPHG+AA+YDAL RMAQD+S+R  LIEG GNFGS+DGDPPAA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +DG + +ID PD     LM++I+GPDFPTG +I+GR GI+ AY TGRG I 
Sbjct: 183 IPPHNLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  + +IVVTEIPY+V K+ ++EKIAELV+E+RI  I DLRDE+DR G R
Sbjct: 243 IRAHAQIETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL RGA+ +VILNQLY++T +Q  + +  +AL   +P   TL  +L+ ++  +++V+
Sbjct: 303 VVIELARGANPNVILNQLYKFTPMQVSYGIIQLALVDGQPRVLTLKQLLRHYLDHQKDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA  RAH+L GL IA+ ++D V+ +IR S   + AR  LM+          
Sbjct: 363 VRRTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMEN--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ +  E   L  EI+    
Sbjct: 414 -----------------FNLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S   +L IIKQEL  ++D     RRT+IV G  + E ED I  ED+V+T++H GY+K
Sbjct: 457 VLNSEKMVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  YR+QRRGG+G +G+  R+EDFV+ LFI +TH ++LFF++ G VY  +V  +P  
Sbjct: 517 RLPVDTYRSQRRGGRGITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG A++N++ + Q E++T ++P  +      +  ++  T+ G V+R  L++F  I 
Sbjct: 577 SRTARGTAVVNLIEIGQDEQVTAVIPVRD---FGEDRDLLMCTRRGVVKRTALAEFGHIR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G IA+ LD  DE+++V+      D+LL T+ GQ +RFP++ +R    R + GV GI L
Sbjct: 634 RGGLIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTMG-RTARGVMGIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+V+ M +                                                 
Sbjct: 693 EEGDEVVGMEVADD---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L ++++G+GKRT   +FR   R GKGIRA  ++  N  G +     V  
Sbjct: 707 -------EAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARN--GQVAGFEVVRP 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++++L+S  G ++RVPV+++ I  RA +GV +      +RV +V  + 
Sbjct: 758 GEEVMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVA 806



 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 87/217 (40%), Gaps = 10/217 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADAD 747
              +E+ ++  T  G   R P+   R    R   G+ GI   + D V  + I   H +  
Sbjct: 499 LIAEEDVVITLTHRGYIKRLPVDTYRS-QRRGGRGITGIQTREEDFVSQLFIATTHENLL 557

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKN--DSSVEGNISEERCQELKLKEQFILTVSE 805
           +      + H        +  T   T++ N  +   +  ++         +++ +L  + 
Sbjct: 558 FFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIGQDEQVTAVIPVRDFGEDRDLLMCTR 617

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  KRT+  +F    R G    +      +    LVAV   +    ++L++ +G  IR 
Sbjct: 618 RGVVKRTALAEFGHIRRGGLIALSL-----DPGDELVAVQLTDGRGDVLLLTRQGQAIRF 672

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           PV E+R   R  +GV+     + + VV +E + + E 
Sbjct: 673 PVAEVRTMGRTARGVMGIRLEEGDEVVGME-VADDEA 708



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 82/204 (40%), Gaps = 16/204 (7%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           R  +        + +  +  + L      + ++V      L  + +Y      +      
Sbjct: 407 RTGLMENFNLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEY--LRAVLNSEKMV 464

Query: 762 RRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +I  +  EI     D     +    +E   ++L  +E  ++T++ +G+ KR     +R
Sbjct: 465 LDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYR 524

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R G+GI      + + +  L   F    ++ ++  +++G +    V+E+  ASR  +
Sbjct: 525 SQRRGGRGITGIQTREEDFVSQL---FIATTHENLLFFTNRGKVYHRRVHEVPEASRTAR 581

Query: 879 G---VVIFSTAKDERVVSVERIRE 899
           G   V +    +DE+V +V  +R+
Sbjct: 582 GTAVVNLIEIGQDEQVTAVIPVRD 605


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/889 (43%), Positives = 550/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR  G+V+GKYHPHG+AA+YDAL RMAQD+S+R  LIEG GNFGS+DGDPPAA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +DG + +ID+PD     LM++I+GPDFPTG +I+GR GI+ AY TGRG I 
Sbjct: 183 IPPHNLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE ++  + +IVVTEIPY+V K+ ++EKIAELV+E+RI  I DLRDE+DR G R
Sbjct: 243 IRAHAQIETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL RGA+ +VILNQLY++T +Q  + + ++AL   +P   TL  +L+ ++  +++V+
Sbjct: 303 VVIELARGANPNVILNQLYKFTPMQVSYGIILLALVDGQPRVLTLKQLLRHYLDHQKDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT++ L KA  RAH+L GL IA+ ++D V+ +IR S   + AR  LM+          
Sbjct: 363 LRRTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  L+E Q +AIL++RL RLTGL R+ +  E   L  EI+    
Sbjct: 413 ----------------SFSLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S   +L IIKQEL  ++D     RRT+IV G  D E ED I  ED+V+T++H GY+K
Sbjct: 457 VLNSEKMVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+QRRGG+G +G+  R+EDFV  LFI +TH ++LFF++ G VY  +V  +P  
Sbjct: 517 RMPVNTYRSQRRGGRGVTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG A++N++ + + E++T ++P  +      +  ++  T+ G V+R  L++F  I 
Sbjct: 577 GRTARGTAVVNLIEIERDEQVTAVIPVRD---FGEDRDLLMCTRRGVVKRTALAEFSHIR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G IA+ LD  DE+++VE      D+L+ T+LGQ +RFP++ +R    R + GV GI L
Sbjct: 634 RGGLIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTMG-RAARGVMGIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+V+ M +                                                 
Sbjct: 693 DEGDEVVGMEVADD---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L +++ GFGKRT   +FR   R GKGIRA  ++  N  G +     V  
Sbjct: 707 -------EAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARN--GRVAGFEVVRP 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++++L+S  G ++RVPV+++ +  RA +GV +      +RV +V  + 
Sbjct: 758 GEEVMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVATVA 806



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 20/222 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +E+ ++  T  G   R P++  R    R   GV GI   + D V  + I       +
Sbjct: 499 LIAEEDVVITLTHRGYIKRMPVNTYRS-QRRGGRGVTGIQTREEDFVAQLFIA----TTH 553

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--------KEQFI 800
           +  + +        R +  +  E       ++V   I  ER +++          +++ +
Sbjct: 554 ENLLFFTNRGKVYHRRV-HEIPEAGRTARGTAVVNLIEIERDEQVTAVIPVRDFGEDRDL 612

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  + +G  KRT+  +F    R G    A      +    LVAV   +    +++V+  G
Sbjct: 613 LMCTRRGVVKRTALAEFSHIRRGGLIALAL-----DPGDELVAVELTDGRGDVLVVTRLG 667

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             IR PV E+R   RA +GV+     + + VV +E + + E 
Sbjct: 668 QAIRFPVAEVRTMGRAARGVMGIRLDEGDEVVGME-VADDEA 708


>gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
 gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
          Length = 848

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/890 (43%), Positives = 555/890 (62%), Gaps = 68/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPDDL 436

Query: 438 SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +   G      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 437 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 496

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 497 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 556

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 557 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 616

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA+
Sbjct: 617 PIINLLPLVKDEQISAILPIRAYDGS---HFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 673

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R    R++ GVRGI L     VI
Sbjct: 674 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMG-RSARGVRGIKLKAKQNVI 732

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 733 ALIVVKPKGN-------------------------------------------------- 742

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 743 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 797

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E 
Sbjct: 798 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAIS-AELIEEP 846


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/881 (42%), Positives = 546/881 (61%), Gaps = 85/881 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I  ++I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 6   EFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDK 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD++ R  L++G GNFGS+DGD  AA R
Sbjct: 66  PHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDTVDF PN+D + +EPVVL AR PN+L+NG  GIAVGMATN
Sbjct: 126 YTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++DG + +IDNPD     LM  ++GPDFPTG +I+GR GIK+AY TGRG+I 
Sbjct: 186 IPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIMGREGIKSAYKTGRGAIR 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  S  + +I+V E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G +
Sbjct: 246 IRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQ 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL++ A+  V+LNQL+++T LQ  F V M+AL   +P+   L   L  ++  +++V+
Sbjct: 306 IVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQPKVLNLRDALFYYLEHQKDVI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L+KA  RAH+L GL IA+ +LDEV++ IR S   E AR  LM +         
Sbjct: 366 TRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDK--------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL +LTGL R+ +  E  +L   I     
Sbjct: 417 -----------------FGLSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKA 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L++   +LGIIK+ELL +K++ + PRRT I    ++++ ED I  EDMV+T++HLGY+K
Sbjct: 460 VLANEHMVLGIIKEELLVIKEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIK 519

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR Q+RGG+G + +  ++EDFV  LFI +TH  +LFF++ G VYK KV  +P  
Sbjct: 520 RIALDTYRNQKRGGRGVTAMGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEA 579

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N+L ++  E+IT ++P    ++     Y++  T+ G +++  L ++    
Sbjct: 580 GRQAKGTAIVNLLYISGDEKITAVIPVRSFDTEE---YLLTITRKGVIKKTPLVEYGSTR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD  DE++ V+    +N++++ TK G+ +RF    +R    R + GVRGISL
Sbjct: 637 KDGIIALSLDENDELIDVKLTNGKNEVIIGTKEGKAIRFAEEEVRSMG-RAARGVRGISL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D+VI +  +                                                
Sbjct: 696 SEKDEVIGIDTIEQG--------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+EKGFGKR+   D+R   R GKGI     +K N  G LV +  V  
Sbjct: 711 --------ADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRN--GHLVGIKVVKP 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            D+++L++ +G +IR+ V+ I    R+T+GV +    +++ 
Sbjct: 761 GDELMLITAEGIIIRLDVDGISTMGRSTQGVRLMRLDENDH 801



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 23/241 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD  DE++           +  ++  +  R  +      + + +  +  + L K  
Sbjct: 386 LKIALDHLDEVI---------KTIRESRTVEIARNALMDKFGLSEKQAQAILDMRLQKL- 435

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC--- 790
             +    +     +  ERI Y+K + A   ++ G  +E   +  +   +   +E      
Sbjct: 436 TGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVIKEKYNDPRRTEISINDV 495

Query: 791 ----QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               ++L  +E  ++T++  G+ KR +   +R   R G+G+ A    + + +  L   F 
Sbjct: 496 NIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQKRGGRGVTAMGTKEEDFVEHL---FI 552

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903
              +  ++  ++KG + ++ V+ I  A R  KG  I +    + DE++ +V  +R  +  
Sbjct: 553 TTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVNLLYISGDEKITAVIPVRSFDTE 612

Query: 904 D 904
           +
Sbjct: 613 E 613


>gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
 gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
          Length = 848

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/890 (43%), Positives = 555/890 (62%), Gaps = 68/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-------LIDDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 436

Query: 438 SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +   G      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 437 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 496

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 497 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 556

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 557 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 616

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA+
Sbjct: 617 PIINLLPLVKDEQISAILPIRAYDGS---HFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 673

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R    R++ GVRGI L     VI
Sbjct: 674 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMG-RSARGVRGIKLKAKQNVI 732

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 733 ALIVVKPKGN-------------------------------------------------- 742

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 743 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 797

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E 
Sbjct: 798 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAIS-AELIEEP 846


>gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
 gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
          Length = 850

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/890 (43%), Positives = 555/890 (62%), Gaps = 68/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-------LIDDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 438 SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +   G      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA+
Sbjct: 619 PIINLLPLVKDEQISAILPIRAYDGS---HFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R    R++ GVRGI L     VI
Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMG-RSARGVRGIKLKAKQNVI 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E 
Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAIS-AELIEEP 848


>gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 850

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/890 (43%), Positives = 554/890 (62%), Gaps = 68/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV  E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-------LIDDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 438 SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +   G      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA+
Sbjct: 619 PIINLLPLVKDEQISAILPIRAYDGS---HFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R    R++ GVRGI L     VI
Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMG-RSARGVRGIKLKAKQNVI 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E 
Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAIS-AELIEEP 848


>gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
 gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
          Length = 850

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/890 (43%), Positives = 555/890 (62%), Gaps = 68/890 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-------LIDDS 437
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +          DD 
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 438 SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +   G      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    + S    +V  AT  G +++  L++F Q    GKIA+
Sbjct: 619 PIINLLPLVKDEQISAILPIRAYDGS---HFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R    R++ GVRGI L     VI
Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMG-RSARGVRGIKLKAKQNVI 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I  +E+++E 
Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAIS-AELIEEP 848


>gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 937

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/916 (40%), Positives = 557/916 (60%), Gaps = 51/916 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++  ++NK Y K
Sbjct: 4   DSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ R+AQ +S+R +LI+GQGNFGSVD DP AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+ PNYDGS Q P V+ AR PN+LVNG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  D+P I  + LM+ I GPDFPTG +I GR+GI +AY TG+G + +RG 
Sbjct: 184 NLTEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIYGRSGIVDAYRTGKGRLHLRGK 243

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + +RE+IV TEIPYQ NKA ++EKIAELVR+K++  I+++RDESD+ G 
Sbjct: 244 YHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKDGM 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EV
Sbjct: 304 RIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQPKIMTLRDLIAAFVRHRQEV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KA+ R H+L GL IA+AN+D ++  I+ S N + AR  L+  +W +  + 
Sbjct: 364 VTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGGVI 423

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            +++     S                 I  +    LS  Q  AIL+++L RLTGL +D +
Sbjct: 424 AMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQDKL 483

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           + E   +   I +   IL +  +L+ +IK EL+ ++++    R+T+IV+   D    D I
Sbjct: 484 QQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDFSRADLI 543

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+S Y AQ+RGGKG+S   M+ +D +  + + STH +V+ F+
Sbjct: 544 SEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMVVTSTHNNVMIFT 603

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V+  +V+ +PI S  +RG+ ++N+++L+  E++T I+P  ED    +N YV FAT 
Sbjct: 604 DRGRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDAKQNDNSYVFFATA 663

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R +LS F  +  +G  A++L+  D ++ V     + DI+L +  G+ +RF  S I
Sbjct: 664 SGMVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFSNEGKAIRFNESKI 723

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG+ +                             +        + E+ +
Sbjct: 724 RAMG-RTAKGVRGMRV-------------------------TLLANQGIEDEDTELEDDS 757

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
               D+     +S      +  ++  IL   E+GFGKRT   DF +  R GKGI A   +
Sbjct: 758 QDDQDNDSVVAVSRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTT 817

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G LV    V D D I+L+SD GTL+R PV +I    R  +GV +   ++DE +VS
Sbjct: 818 ARN--GELVQALAVTDADDIVLISDAGTLVRTPVGQIAQTGRNAQGVTLIRISQDESLVS 875

Query: 894 VERIR---ESEIVDEA 906
           +  +    E E+ +++
Sbjct: 876 IALVEGGSEDELDEDS 891



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/289 (19%), Positives = 109/289 (37%), Gaps = 25/289 (8%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V  +L + ++        V   +  G VKRV LS ++  R    G   V + D D +  +
Sbjct: 640 VTAILPVTEDAKQNDNSYVFFATASGMVKRVQLSQFKNLR--ANGLRAVELNDGDNLIGV 697

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG-KALINILSLNQG------------ 627
            I      ++ FS+ G   +    ++      A+G + +   L  NQG            
Sbjct: 698 AITDGDQDIMLFSNEGKAIRFNESKIRAMGRTAKGVRGMRVTLLANQGIEDEDTELEDDS 757

Query: 628 ------ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
                 + +  +        +     ++ A + G  +R  +SDF    R GK  + + + 
Sbjct: 758 QDDQDNDSVVAVSRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTT 817

Query: 682 D---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               E++     T  +DI+L +  G  VR P+  I    GRN+ GV  I +++ + ++S+
Sbjct: 818 ARNGELVQALAVTDADDIVLISDAGTLVRTPVGQI-AQTGRNAQGVTLIRISQDESLVSI 876

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           A+V     D  +       ++        D      L++    E    +
Sbjct: 877 ALVEGGSEDELDEDSLEAALADNIAQDGTDLRNSADLQDIELSEALQQD 925


>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
 gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
          Length = 837

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/893 (44%), Positives = 559/893 (62%), Gaps = 84/893 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R++
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VA+I+NP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    I
Sbjct: 188 EVIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247

Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E +   +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G RVVIELK
Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT +
Sbjct: 308 KDENPTILLNHLYKQTQMQSSFGIIMLAIVHNRPRVLTLRETIDFFIEHRKEIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RLTGL RD I  EL  +   I    +IL+S +
Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEA 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILKIIVGELIELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L   E+IT I+P  E     ++ +++ AT++G V++  + ++      G IA
Sbjct: 582 KAIVNLLNLAANEKITAILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D+++SV     + D+LL T  G+ +RF    +R    R S GVRG++L + D V
Sbjct: 639 VNLDEGDKLISVALTDGKQDVLLATANGKAIRFKEDDVRTVG-RVSRGVRGMAL-EDDVV 696

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I MAI+                                                      
Sbjct: 697 IGMAILNE--------------------------------------------------HF 706

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L
Sbjct: 707 TDSTIFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERN--GQVVDIKQVNDDNDLML 764

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++D+G ++RV V+   I  R T+GV +    ++ERVV+V R+ E E  DE E 
Sbjct: 765 ITDQGKILRVQVSGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENED 817



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 103/253 (40%), Gaps = 13/253 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +      V +  ++  +  G VK+  +  Y   R G  G   V + + D +  + 
Sbjct: 594 EKITAILPVKEFVDDKFIMMATRNGVVKKTNMMEYSHPRVG--GIIAVNLDEGDKLISVA 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      VL  ++ G   + K   +      +RG   +  ++L        ++       
Sbjct: 652 LTDGKQDVLLATANGKAIRFKEDDVRTVGRVSRG---VRGMALEDD----VVIGMAILNE 704

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
            + +  +   T++G  +R ++S++   +R GK  + + +     +++ ++    +ND++L
Sbjct: 705 HFTDSTIFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERNGQVVDIKQVNDDNDLML 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G+ +R  +S   +   RN+ GVR +   + ++V+++A +   +   +         
Sbjct: 765 ITDQGKILRVQVSGFSIIG-RNTQGVRLMVKEENERVVAVARLAEKEEQDENEDGSEIDE 823

Query: 759 SAQRRLISGDTEE 771
             +     GD  E
Sbjct: 824 IVELEADGGDEGE 836


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/889 (41%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   +    I +EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EEDVPRLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ ++YDA+ RMAQD+S R +L+ G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  L+ DL KDTVDF  NYDG+ +EP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NPDI +  LME I GPDFPTG  ILGR+GI+ AY+TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEILGRSGIRKAYSTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I   +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I +LRD SDR G  
Sbjct: 243 VRAKTEI-VENKGKQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMN 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R A+ +VILN L++ T+LQ+ F +NM+AL   +PE   L   L+ ++A + EV+
Sbjct: 302 IVIDVRRDANPNVILNNLFKQTALQTSFGINMLALVNGRPEVLNLKQTLEQYLAHQVEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L GL IA+ ++DE++ +IR S   E AR  L++R         
Sbjct: 362 RRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD +  E   +   I E   
Sbjct: 413 -----------------FELSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +++ +I++E+L++K++ +  RRT I      +EDED I R+++V+T++H GY+K
Sbjct: 456 ILASDEKVIDVIQEEILAIKEKFNDERRTVISASEEHLEDEDLIPRQNIVITITHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YRAQ+RGGKG  G+   D+DFV  LF  +TH +VL F++ G  Y+ K + +P  
Sbjct: 516 RLPISTYRAQKRGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G   IN+L  + GE I+T++P    E   ++ Y+ F T+HG  +R KLS F  I 
Sbjct: 576 GRTAKGIPAINLLPFDPGETISTVIPI---ECFDDDSYLFFVTEHGIAKRTKLSAFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+ L   D +  V       ++++ TK G  +RFP + +R+   R + GV+GI+L
Sbjct: 633 KGGLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLMG-RTAGGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +                                             +ND  V   + +E 
Sbjct: 692 S---------------------------------------------ENDGVVGMEVVDE- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+EKG+GKRT   ++R+ +R GKGI+  +++  ++ G LV++  V D
Sbjct: 706 -------NQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNIT--DKNGPLVSLKMVAD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            D I++V+  G +IR  V+ I    R T+GV +    + E V +V R+ 
Sbjct: 757 EDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVARVN 805


>gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
          Length = 861

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/892 (44%), Positives = 554/892 (62%), Gaps = 68/892 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V++ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G  WNKKY K
Sbjct: 6   REIVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYSK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I G+VMGKYHPHG++AIYD L RMAQ +S+R +L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRYTES 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL D+ K+TVDF PNYDGS +EP VL    PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGE +D  + ++D+P+  +  LM  + GPDFPTGA+I G  GI  AY TG+G I IR  
Sbjct: 186 HLGETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGALINGTKGIYEAYETGKGRIYIRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +HIE      ++ IVV E+PYQVNKA +L KIAELV++K+I  I  LRDESD+ G R+VI
Sbjct: 246 THIETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIRMVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++RG  A+VILNQL++ T LQ+ FSVNMVAL G +P+   L  +L  F+A R EVV RR
Sbjct: 306 EVRRGEVAEVILNQLFQQTQLQTTFSVNMVALVGGQPKLLGLKSLLNVFIAHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+RAH+L GLA+A++N+D+++ +I+ +  P  A+  L+ ++W A  +  ++ 
Sbjct: 366 TIYELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAVMLA 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +              G  YLS  Q +AIL+LRL RLTGL ++ I  E  S+  +I
Sbjct: 426 HAGAENSRPEQLAEEYGLHAGGYYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSIIRDI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +  L IL    RL+ +IK+ELL++K + +  R T I++  LD+  ED I  ED V+T+SH
Sbjct: 486 EGFLAILHIPERLVAVIKEELLAIKAQFNDQRCTHILDTHLDLSMEDLIAEEDRVITLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PLS Y AQRRGGKG+S   ++D+DFV  LFI +TH ++L FS+ G VY  KV+
Sbjct: 546 EGYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S  A+GK ++N+L     ER+  I+   E      +LY+ FAT++G V++  LS+
Sbjct: 606 ELPHASRNAKGKPIVNLLPFEADERLNAILTTREY---PEDLYLFFATQNGTVKKTPLSE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ L   D+++ VE    E +I+L +  G+ VRF    +R    R + GV
Sbjct: 663 YSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSMG-RAAGGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L  G +VI++ ++                                           
Sbjct: 722 RGMRLEAGQKVIALCVLKDQGD-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT++E G+GKRT + D+    R  KG+ +   S+ N  G  V  
Sbjct: 744 ---------------ILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERN--GNAVYA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V +++ I+LV+D GTL+R  V EI  + R T+GV +  TA+ E+V++  +
Sbjct: 787 IQVCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRTAESEKVIAAAK 838


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/893 (42%), Positives = 549/893 (61%), Gaps = 86/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A VILN LY+ T+LQ+ F +N++AL   +P+   L   L  ++  ++ V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLVHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  +
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKE 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GY+
Sbjct: 457 ILANEEKVLEIIREELTEIKERFNDKRRTEIVTAGLETIEDEDLIERENIVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+    +DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +     LY+ F TKHG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDE---KLYLFFTTKHGISKRTTLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V        I++ TK G  +RFP S +R    R + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREMG-RTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDIVVGMEILED--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+E G+GKRT + D+R  +R GKG++   +++ N  G LV V    
Sbjct: 708 --------DSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENN--GRLVTVKATK 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             + +++++  G LIR+ + +I I  R T+GV +    + E V +V  + +++
Sbjct: 758 GEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATVALVEKND 810


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/892 (43%), Positives = 550/892 (61%), Gaps = 85/892 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    +  V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKP+HRRIL+ M ++ +  ++ 
Sbjct: 3   ELGGKVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A I G+VMGKYHPHG+AAIYDA+ R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  HRKSATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG V +I+NPD+    LM  I+GPDFPTG +ILGR GI+  Y TGRGSI++
Sbjct: 183 PPHNLSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIILGREGIREMYTTGRGSIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G +++IVVTEIPY VNKA ++EKIAELVR+K +  I+DLRDESDR G R+
Sbjct: 243 RAKATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A VILNQLY++T +Q  F   M+AL   KP+  TL  ++  ++  ++EVVV
Sbjct: 303 VIELKRDANAHVILNQLYKHTQMQVTFGAIMLALVENKPQVLTLREMIYHYLRHQQEVVV 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L +A +R H+L GL IA+ +LDEV+ +IR S +  TAR  LM+           
Sbjct: 363 RRTKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKN---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q + IL++RL RLT L R  I +E   L  +I     +
Sbjct: 413 ----------------FGLTEKQAQVILDMRLQRLTALERQKIEDEYRELLEKIDYYKRV 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L     +  IIK+ELL +K+     RRTRIV  + D +++D I  ED+V+T++++GYVKR
Sbjct: 457 LGDEKLVFAIIKEELLKIKERFGDERRTRIVAEVKDFDEQDLIPEEDVVITMTYMGYVKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS YR+Q+RGGKG +G+  R+EDFV  + + +TH  VLFF++ G VY+ K   +P   
Sbjct: 517 MPLSSYRSQKRGGKGVTGITTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G A++N+L L   E++  ++P  +   +    Y+V  TK G V++  LS++    +
Sbjct: 577 RTAKGTAIVNLLPLKPQEKVNAVIPIKDFGEAS---YLVMVTKRGLVKKTLLSEYESSRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L S DE++ V+   ++++++L T  G  +RF +  +    GR + GV+ I+L 
Sbjct: 634 TGIIAITLTSGDELIGVKLVGKKDELILGTSHGMSIRFSVEDVTP-TGRTARGVKAITLG 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V SM +                                                  
Sbjct: 693 EGDEVASMDVTSVG---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKGFGKRT   ++RI  R G+GI    V+  +  G LV +  V + 
Sbjct: 707 -------SDVLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVT--DTTGRLVGLRVVAEG 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D IIL +  G +IR+ V+ I   SR T+GV +    + ++V +V  IRESE 
Sbjct: 758 DDIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESED 809


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/894 (41%), Positives = 528/894 (59%), Gaps = 62/894 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I +EM++SY+ Y+++VI+GRA+PD+RDGLKPVHRR+L+GM ++G+  + 
Sbjct: 2   EAEKPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD+++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ KDTVDF+ N+DGS +EPVVL A  PN++VNG  GIAVGMAT 
Sbjct: 122 YTEARLTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATK 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE VD  VA+IDNPDI LD L++ +  PDFPTG +I G +G+K AYATGRG I+
Sbjct: 182 IPPHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVKEAYATGRGRIL 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   H E+    R  +V+TEIPYQVNK++++EKIA LVRE+RI  I D+RDESDR+G R
Sbjct: 242 IRARIHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+EL++ A   VI NQLY+YT  Q  F VNMVAL   +P   TL  +++ ++  R EVV
Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA +RAH+L GL IA+ +LD V+ IIR+S +P+ AR+ LM+         +
Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
             + +      I       L+E Q  AIL LRL+RLTGL R  +  E  +L  EI+    
Sbjct: 422 QRERLGLPVEQISH---FTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRS 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S      II++ELL +K +    RRT I   G  D   ED I  E +VVT+SH G +
Sbjct: 479 ILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLI 538

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+ +YR Q RGG G     MR++D++  LF    H  +LFF+  G  Y  +V+ +P 
Sbjct: 539 KRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPE 598

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNVRRNKLSD 664
           GS  + G+++ N++ +   +R+  ++       E+       YV+ AT+ G V++ +L  
Sbjct: 599 GSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEA 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G IA+     DE++          +LL +  G+ VRF  S +R    RN+ GV
Sbjct: 659 FSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMG-RNTRGV 717

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L  G+QV+ M  V                                           
Sbjct: 718 RGIALETGEQVVGMVAVSPE---------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          IL++S  G+GKRT   ++ +  R GKG+    ++     G L+A+
Sbjct: 738 -----------ASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR--TGRLIAI 784

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V D D +++++  G +IR+ V +I    R T+GV +      + +  V R+ 
Sbjct: 785 KAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQLKPGDAIADVTRLV 838


>gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
          Length = 830

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/893 (43%), Positives = 566/893 (63%), Gaps = 85/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  ++I  EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++GV  +K 
Sbjct: 3   DNKDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R LL++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  ++ D+ K+TVD+RPN+D + +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V +ID+ + +++  ME I+GPDFPTG +ILG  GIK+AY TGRG I +
Sbjct: 183 PPHNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGTEGIKDAYTTGRGKIKV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ S  R+ I+V EIPYQVNKA ++EKIAELVR+K+I  I+DLRDESDR+G R+
Sbjct: 243 RAKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LN+LY++T L+  F V M+A+   +P+   L  +L  ++  +++++V
Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQPKVLNLKEVLTHYLNHQKDIIV 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA DRAH+L GL IA+ NLDEV+++IR S N + A+  LM++          
Sbjct: 363 RRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL +LTGL  + +  E   L   I    +I
Sbjct: 413 ----------------FSLSEKQAQAILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++   LL IIK+ELL ++++    RRT I      +   D +  ED+V+T++H GY+KR
Sbjct: 457 LANERLLLDIIKEELLEIREKYADKRRTEIAIDPGSINMIDLVDEEDVVITLTHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  YR+Q+RGGKG SGV  RDEDFV  L I STH+ +LFF++LG VYK  V+ +P G 
Sbjct: 517 LPIDTYRSQKRGGKGISGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGR 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I  ++P   D    N  Y+V AT+ G +++ +L  F    +
Sbjct: 577 RQAKGTAIVNLLQLSANEKIAAVIPVDRD---CNEQYLVMATQKGIIKKTELCQFDNTRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G +A+ +   DE++SV    +E +I + T  G  +RF    +R    R ++GV+GI+LA
Sbjct: 634 TGLMAINIREDDELISVRLINKEQEIFMITSQGMSIRFKEDNVRDMG-RTAMGVKGINLA 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V++M ++                                                 
Sbjct: 693 EKDYVVAMEVLED----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + +L VSE G GKRT   ++R+  R GKGI+   VSK  + G L+    V D+
Sbjct: 706 ------NKDLLVVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSK--KTGNLIGAKIVEDH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+I+L++++G +IR+ V  I    RAT+GV + +T  ++ +VS+ +I   E V
Sbjct: 758 DEILLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSIVSIAQIPYHEEV 810


>gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1]
 gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1]
          Length = 840

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 520/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D +    A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+ RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNGDDELLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   D+ +  R GKG+      K
Sbjct: 722 -----------------------TYLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDK 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    VND+D++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 --KRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRES--EIVDEAEST 909
            R  +   E  D AES+
Sbjct: 817 ARNADEPDEPDDNAESS 833


>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 843

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/889 (42%), Positives = 550/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  L+ D+ KDT+D++ NYDGS  EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ +NP I    LME I GPDFPTGA I+G +GI+ AY TG+GSI 
Sbjct: 183 IPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIVGVSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  + +I+VTEIPYQVNKA ++EKIAELVR+K++  I DLRDESDR G R
Sbjct: 243 IRAKAEIE-DNNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +A+V+LN LY+ T+LQS F +NM+AL   +P+  ++  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVDGRPKVLSIKEVLYHYLEHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ +IR S   E AR+ LM+          
Sbjct: 362 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLMEN--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L  +IKE   
Sbjct: 413 -----------------FSLSHDQAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++EL  ++D  +  RRT I  G   MEDED I R+++V+T+SH GY+K
Sbjct: 456 ILADDEKVLAIIREELTDIRDRYNDERRTIITFGEDSMEDEDLIPRQNVVITLSHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR+Q+RGG+G  G+   D+DFV  LFI ++H  +LFF++ G VY+ K + +P  
Sbjct: 516 RIPLSTYRSQKRGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSF 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +  A+G  +IN+L + + E ++T++P  E +      Y+ F TK G  +R  L  F  I 
Sbjct: 576 NRTAKGIPIINLLQIEKDEYVSTVIPVDEFDEE---RYLFFMTKDGIAKRTALKVFSNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   D +  V       +I+  T+ G  +RF  + +R+   R + GV+G++L
Sbjct: 633 RGGLFAINLREGDALHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLMG-RTATGVKGVTL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + DQV+ M  +    A                                           
Sbjct: 692 QENDQVVGMDTIEEDQA------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+EKGFGKRT   ++RI  R GKGI+  +++  ++ G L+++  V+D
Sbjct: 709 ----------VLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNIT--DKNGPLISLKVVSD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  ++++++ G +IR+ V EI    R T+GV +     +E V +V R+ 
Sbjct: 757 DHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVARVN 805


>gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
 gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
          Length = 899

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/920 (41%), Positives = 550/920 (59%), Gaps = 83/920 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M Q+  ++NK Y K
Sbjct: 3   DSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR  +++GQGNFGS+D DP AA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  H
Sbjct: 123 RMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  DNP+I  + L   I GPDFPTG +I GR+GI +AY TG+G + IRG 
Sbjct: 183 NLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + DRE+IV TEIPYQ NKA ++E+IAELVR+K+I  I+++RDESD+ G 
Sbjct: 243 YHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L+RG  A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EV
Sbjct: 303 RIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKA+ R H+L GL +A+AN+D+++  I+ S N   AR +L+ + W++  + 
Sbjct: 363 VTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGTVV 422

Query: 429 DLIDLID-----------------------DSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            ++                           +    I       LS  Q  AILE++L RL
Sbjct: 423 AMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLHRL 482

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
           TGL +D +  E   L  +I E   IL+   +L+ +IK E+L + +     RRT IV+   
Sbjct: 483 TGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSRT 542

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D   ED I  + +V+TVS  GY K  P+S Y AQ+RGGKG+S   M+++D +  L + ST
Sbjct: 543 DFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTST 602

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H +VL F+  G V+  + + +PI S  ARG+ L+NI+ L   E +TTI+P P      ++
Sbjct: 603 HATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEIDS 662

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            +V FAT +G V+R +LS F  I  +G IA+ L+  D+++S      E  ++L    G+ 
Sbjct: 663 HFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGKA 722

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  +  RV   R + GVRG+ +A  + + S+ ++                        
Sbjct: 723 IRFDENDARVMG-RTAKGVRGMRIANDEFIKSLVVI------------------------ 757

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                EE  QE       IL   E G+GKRT   +F   NR G 
Sbjct: 758 ---------------------EEDVQE-------ILIACENGYGKRTPVDEFNAQNRGGG 789

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ A   S+ N  GALV    V   D IIL+S+KGTL+R PV ++  + R T+GV +   
Sbjct: 790 GVIAIKTSERN--GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRL 847

Query: 886 AKDERVVSVERIRESEIVDE 905
           +KDE +V++ R+ ++   DE
Sbjct: 848 SKDEALVAMARVEDTGEEDE 867



 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 112/264 (42%), Gaps = 14/264 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            IV  +L + +    +    V   +  G VKRV LS + A  R   G   + + + D + 
Sbjct: 645 EIVTTILPIPNLSEEIDSHFVFFATANGTVKRVELSQF-ANIRS-NGLIAIGLEEGDKLV 702

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              I +    V+ F+S G   +       +    A+G   +  + +   E I +++   E
Sbjct: 703 SARITNGEQQVMLFASSGKAIRFDENDARVMGRTAKG---VRGMRIANDEFIKSLVVIEE 759

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQEND 695
           D        ++ A ++G  +R  + +F   NR G   IA+K       ++       E+D
Sbjct: 760 DVQE-----ILIACENGYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRATKVQPEDD 814

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I+L +  G  VR P++ +   +GRN+ GV  I L+K + +++MA V     + +     +
Sbjct: 815 IILISNKGTLVRTPVAQVAT-SGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEAMI 873

Query: 756 KHMSAQRRLISGDTEEITSLKNDS 779
           ++      ++  D +      +D+
Sbjct: 874 ENGLLTGDVLDADKDSDVVDHSDT 897


>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
 gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
          Length = 818

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/891 (41%), Positives = 553/891 (62%), Gaps = 86/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+  +K Y K 
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I G+VM  +HPHG++AIYDA+ R+AQD++ R  LI+G GNFGS+DGDPPAA RYTE R
Sbjct: 67  AGIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ K+TVDF PNYD   +EP +L ++ PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GEV+DG + +I +P++  D LM++I+GPDFPTGA I+G+ GI+ AY TGRGS+ +R  +
Sbjct: 187 MGEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIMGKDGIRQAYRTGRGSVKMRAQT 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  +  R  I+V EIPYQVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL
Sbjct: 247 TIETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ ++ +VILN LY++T +Q  F + M+AL   +P+   L  ++  ++  +++V+ RRT+
Sbjct: 307 KKDSNPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQVIFHYLEHQKDVITRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA  RAH++ GL IA+ANLDEV++ IR S N E ARR L+ +              
Sbjct: 367 YELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDK-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AI+E+RL  LT L  + +  E   L  +I     IL+  
Sbjct: 413 ------------FNLTEIQAEAIVEMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L II+ ELL VK++    RRT I      D + ED I  EDMVVT+++ GY+KR+ +
Sbjct: 461 QKVLNIIRDELLVVKEKFADARRTLISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISM 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGGKG + +  ++EDFV DLFI STH  +LFF++ G VY+ KV+ +P  S  A
Sbjct: 521 DTYRSQKRGGKGITAMGTKEEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN+LS +  E +TT++P  E E +    Y+  ATKHG V++  L+++    R G 
Sbjct: 581 KGTPIINLLSFDSDEYVTTVIPIKEFEET---AYLFMATKHGIVKKTALTEYNSSRRDGL 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD +D++++VE    + +I++ T+ G  +RF    +R    R + GV+GI+L++ D
Sbjct: 638 IAINLDEKDKLVAVELTHGKEEIIMCTQEGIAIRFSEEDVRPMG-RVTRGVKGITLSQND 696

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ M ++                                                    
Sbjct: 697 HVVKMDVIK--------------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +LTV+  G+GKRT   ++RI  R GKGI     +K N  GA+  V  V++ D++
Sbjct: 706 --EGASLLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRN--GAVTGVLVVSEEDEV 761

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++S +G +IR+ V ++    R T+GV +  T +++ +V++ ++   E  +
Sbjct: 762 MMISAEGIIIRINVKDVSSMGRNTQGVTLMRTGENDHIVAIAKVITEENEE 812



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  L+ Y + RR   G   + + ++D +  + 
Sbjct: 595 EYVTTVIPIKEFEETAYLFMATKHGIVKKTALTEYNSSRR--DGLIAINLDEKDKLVAVE 652

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +  G   +     +       RG   +  ++L+Q + +  +    E  S
Sbjct: 653 LTHGKEEIIMCTQEGIAIRFSEEDVRPMGRVTRG---VKGITLSQNDHVVKMDVIKEGAS 709

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
                 ++  T +G  +R  + ++    R GK  + + +      +  V   ++E+++++
Sbjct: 710 ------LLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRNGAVTGVLVVSEEDEVMM 763

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  G  +R  +  +     RN+ GV  +   + D ++++A V+  + +  +
Sbjct: 764 ISAEGIIIRINVKDVSSMG-RNTQGVTLMRTGENDHIVAIAKVITEENEEKK 814


>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 808

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/887 (42%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  ++ + K 
Sbjct: 7   KVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+ KYHPHG+ A+YDAL R+AQD++ R  L++G GNFGSVDGD  AA RYTE R
Sbjct: 67  AYIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +L D+ K+TV+F PNYDG   EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG + +IDNPD ++  LM +I+GPDFPTG  I+GR GI +AY TGRGSI +R  +
Sbjct: 187 LGEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIMGREGIWDAYRTGRGSIKVRAQA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G R  IVV+EIPYQVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL
Sbjct: 247 SIEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R A+  V+LNQLY++T +Q  F V M+AL   +P    L  +L  ++  +++VVVRRT+
Sbjct: 307 RRDANPQVVLNQLYKHTQMQDSFGVIMLALVEGEPRVLNLKEVLFYYLQHQKDVVVRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LN+A  RAH++ GL IA+A+LDEV++ IR S  PE AR+ LM++              
Sbjct: 367 FELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEK-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q  AI+E+RL +LTGL R+ +  E   L  +I     +L   
Sbjct: 413 ------------FGLTEKQAEAIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++LGIIK ELL+VK +   PRRT I       E+ED I  ED+V+T++  GY+KR+PL 
Sbjct: 461 RKVLGIIKDELLAVKKKFADPRRTAITSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLD 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G + +  ++EDFV  LFI +TH   LFF++ G VY+ KV  +P    QA+
Sbjct: 521 TYRSQRRGGRGVTAMGTKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAK 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L +   E+ITT++P  E + +    Y+  ATK G V++  L+++    R G I
Sbjct: 581 GTAIVNLLYIGSEEKITTVIPVREFDPAQ---YLFMATKRGIVKKTPLNEYDTSRRDGII 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+  D ++ V+      +I+L T+ G  +RF    +R   GR + GV+GI+L     
Sbjct: 638 AISLNEGDHLVDVKLTGGREEIILATRGGLAIRFLEEEVRP-TGRVTQGVKGINLVGD-- 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                                               E    E+ 
Sbjct: 695 ---------------------------------------------------DEVVGMEVA 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             ++F+L+V+  GFGKRT   ++R   R GKGI     +  N  G LVA+  V   ++++
Sbjct: 704 RPDEFLLSVTANGFGKRTRLSEYRAQARGGKGIINIKTTARN--GPLVAIQAVKGEEEVM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++S +G +IR+   +I +  RAT+GV +    + + +V+  ++   E
Sbjct: 762 MISAEGIIIRLKAQDIPVMGRATQGVTLMRLDRGDSLVAAAKVETEE 808


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/902 (42%), Positives = 558/902 (61%), Gaps = 86/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E  I  V++T EM+ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DTPESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGDP AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+DF+ NYDGS +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+VTE+PYQVNKA ++E+IAELV EKRI  I DLRDESDR G R
Sbjct: 243 LRARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY++T++Q+ F +N++AL   +P+   L   LK ++  +EEV+
Sbjct: 303 MVIEVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ ++D ++++IR S   + AR  LM++         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II++ELL +K+  +  RRT I+   +D +EDED I +E + +T++H GY+
Sbjct: 457 VLADEEKVLEIIREELLEIKERFNDERRTEIIAASVDQIEDEDLIPQESIAITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VYK+K + +P 
Sbjct: 517 KRLPISTYRSQKRGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L +++ E I T++     E    + ++ F TK G  +R  +++F  I
Sbjct: 577 YGRTAKGIPIVNLLEIDKDEWINTMIRV---EDFVEDWFLFFTTKKGISKRTPVTEFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+      DI++ TK G  +RFP + +R    R++ GV+GI+
Sbjct: 634 RTNGLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSMG-RSATGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D+V+ M I+   D                                           
Sbjct: 693 LSGDDEVVGMEILEENDD------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V++ G+GKRT   ++RI +R GKG++  +++  N  G LVAV  V 
Sbjct: 711 -----------VLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKN--GPLVAVKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             + I+L++  G LIR+ V +I +  R T GV +     +E V +V ++ + E  +  + 
Sbjct: 758 GEEDIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKDEEENHVDP 817

Query: 909 TE 910
            E
Sbjct: 818 VE 819


>gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
 gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
          Length = 858

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/912 (41%), Positives = 556/912 (60%), Gaps = 72/912 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   +   +    I  V+I DE++ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MSDLTNAPSNQ----ILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+
Sbjct: 57  SELNNDWNKSYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R++K +H +L DL K+TVD+ PNYDG+ Q P V+  + PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEIRMRKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV  C+A+IDNPDI +D L+EII GPDFPT A+I GR GI  A
Sbjct: 177 GIAVGMATNIPPHNLNEVVTACLALIDNPDITIDELIEIIPGPDFPTAAIINGRAGIVQA 236

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TG+G I IR  + +E      ++ I+++E+PYQVNKA ++EKIAELV+EK+I  IA+L
Sbjct: 237 YRTGKGRIYIRSRAVVETNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAEL 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIE+KRG   +V LN LY  T L+++F +N+VAL   +P    L  +L+
Sbjct: 297 RDESDKDGLRVVIEMKRGEMGEVCLNNLYSQTQLENVFGINIVALVDGQPRLLNLKQLLE 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV RRT YLL +AR+R H+L GLA+A++N+D ++ +I+ S     A+ +L  
Sbjct: 357 YFVRHRREVVTRRTVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSA 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471
           + W   D+  ++    +S+             DG  +LS  Q +AIL++RL +LTGL  +
Sbjct: 417 QGWELGDVSQMLARAGESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHE 476

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E      EI E L IL    +L+ +I++EL ++ +E    RR+ I+E   D+  ED
Sbjct: 477 KLLKEYQEKLEEIAEYLSILGDAVKLMTVIREELDAIVNEYGDERRSEIIESTRDLTAED 536

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED VVT+SH GY K   LS Y+AQRRGG G+S   ++DEDFV  L I STH ++L 
Sbjct: 537 LITEEDRVVTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILC 596

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS++G VY  KV+ +P+ S  ARG+ ++N+L L + ERIT+I+P  E        Y+  A
Sbjct: 597 FSNVGKVYWLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEY---TEGHYIFMA 653

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T +G V++ +L++F +    G  A++L+  D ++         D++L +  G+ VRF  +
Sbjct: 654 TANGTVKKTELTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNEN 713

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRGI +A G ++IS+ +                               
Sbjct: 714 DVRAMG-RTAKGVRGIRMADGQKMISLLV------------------------------- 741

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       +L+VSE G+GKR+   +F    R  KG+    
Sbjct: 742 ----------------------PKDGGRMLSVSENGYGKRSEFAEFATKGRGNKGMIFMQ 779

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G ++    V D D+++++SD+GT++R   +EI +  R T+GV +    + E V
Sbjct: 780 ASERN--GEIIGAVQVFDGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHV 837

Query: 892 VSVERIRESEIV 903
           V VERI E E +
Sbjct: 838 VGVERIEEPEEI 849


>gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4]
 gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4]
          Length = 840

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 520/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N + D +    A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+ RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNGDDELLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   D+ +  R GKG+      K
Sbjct: 722 -----------------------TYLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDK 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    VND+D++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 --KRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDNLLAI 816

Query: 895 ERIRES--EIVDEAEST 909
            R  +   E  D AES+
Sbjct: 817 ARNADEPDETDDNAESS 833


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/891 (43%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I +  I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   DQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L DL K+TVDF PNYDG   EPVVL ARYPN+LVNG GGIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I+NPDI    LM+ I+GPDFPT   ILGR+GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+  G++ +I+V E+PYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEI-GNKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN L+++T++QS F +NM+A+   +P+   L  +L  ++  + EV+
Sbjct: 302 VVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+  Q++AIL++RL RLTGL R+ I NE N L  +I E  +
Sbjct: 413 -----------------FSLTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +K+     RRT I  G   + DED I RED+++TV+H GY+K
Sbjct: 456 ILANEHLVLNIISEELNELKERFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +DEDFV  LFI ++H  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E    + Y+ FAT+HG +++  L D+  I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPI---EEFVEDSYLFFATQHGIIKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + ++++ T  G  +RFP S +R    R++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMG-RSATGVKGINL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D VI M IV  +                                             
Sbjct: 692 DESDAVIGMDIVDTS--------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL V+ KG+GKRT   D+RI +R GKGI+  +V+  ++ G +V +  V  
Sbjct: 707 --------LDILIVTAKGYGKRTPVVDYRIQSRGGKGIKTINVT--DKNGPVVGLKVVKT 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GTLIR  + EI    R T+GV + +   D+ V +V R  ++
Sbjct: 757 EEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVCRANKN 807


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/892 (41%), Positives = 546/892 (61%), Gaps = 84/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NP++    LM+II GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S+IE+TS  +++IV+ EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+  V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+          
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMEN--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I +E   L   I E   
Sbjct: 414 -----------------YSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV  G+  +EDED I  E++V+T++H GY+
Sbjct: 457 ILADNEKVLEIIREELTEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +    N Y+ F T+HG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDE---NSYLFFTTRHGVSKRTTLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E  I++ TK G  +RF  + +R    R + GV+GI+
Sbjct: 634 RNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMG-RTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++ D V+ M I+                                               
Sbjct: 693 LSEDDIVVGMEILEP--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+EKG+GK T   ++R+ +R GKG++   ++  N     V      
Sbjct: 708 --------DANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNNGPLVAVKATNAE 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             + +++++  G +IR+ V++I    R T+GV +     +E V +V  + +S
Sbjct: 760 AEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQS 811


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  796 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/898 (42%), Positives = 561/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  +                                                     C 
Sbjct: 693 GDVAV-----------------------------------------------------CM 699

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 700 DIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D  V ++ ++ VS  GY KR  L  Y+ Q RGG G     + D+   V    +      
Sbjct: 699 MDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  ++ G   +  V  + + S  A G  L+  L   + E + TI     D +       
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTL---EDEAVVTIAKISGDTNEEEEEMT 815

Query: 649 VF 650
           + 
Sbjct: 816 LL 817


>gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 825

 Score =  796 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 548/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   I    I  EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EEQSSQIKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL DL KDTVDF PNYDG   EPVVL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG  A+I NPDI    LME I+GPDFPT   ++G +GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLREVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVMGHSGIRQAYTTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  +G + +I+V E+PYQV KA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRARAIIE-DNGGKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN LY+ T +QS F +NM+AL   +P+   L  +L  ++  + E++
Sbjct: 302 VVIELRRDVNPNVVLNNLYKQTQMQSTFGINMLALVNREPKVLNLRDMLYHYLQHQIEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  L+ R         
Sbjct: 362 RRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L  +I E   
Sbjct: 413 -----------------FSLSLEQAQAILDMRLQRLTGLERDKIEAEYAELLAKIAEYKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II  EL  +K+     RRT I  G  ++ DED I RED++++++H GYVK
Sbjct: 456 ILADEQLVLDIISTELNEIKERFGDDRRTEITIGEDEILDEDLIPREDVIISITHSGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+QRRGG+G  G+  +D+DFV  LF+ +TH  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQRRGGRGVIGMDTKDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN+L + QGE +  ++P    E+  N+ Y+ FAT+ G V++  L D+  I 
Sbjct: 576 SRTARGTPIINLLQIEQGEVVNAVIPV---EAFDNDKYLFFATRQGVVKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D+++SV+      +I++ T  G  +RFP   +R    R++ GV+GI L
Sbjct: 633 KVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQDVRSMG-RSATGVKGIQL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+VI M                                                   
Sbjct: 692 DEEDKVIGM--------------------------------------------------- 700

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E  +L V+ KG+GKRT   ++RI +R GKGI+  +V+  ++ G +V +  V +
Sbjct: 701 --EIVHPENDVLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVT--DKNGTIVGLKVVEN 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ +++++  GT+IR  ++ I    R T+GV + +  +D+ V +V R+ ++
Sbjct: 757 DEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDDAVSTVTRVAKN 807


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  796 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/898 (42%), Positives = 561/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  +                                                     C 
Sbjct: 693 GDVAV-----------------------------------------------------CM 699

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 700 DIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D  V ++ ++ VS  GY KR  L  Y+ Q RGG G     + D+   V    +      
Sbjct: 699 MDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  ++ G   +  V  + + S  A G  L+  L   + E + TI     D +       
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTL---EDEAVVTIAKISGDTNEEEEEMT 815

Query: 649 VF 650
           + 
Sbjct: 816 LL 817


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  796 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/898 (42%), Positives = 561/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  +                                                     C 
Sbjct: 693 GDVAV-----------------------------------------------------CM 699

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 700 DIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D  V ++ ++ VS  GY KR  L  Y+ Q RGG G     + D+   V    +      
Sbjct: 699 MDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  ++ G   +  V  + + S  A G  L+  L   + E + TI     D +       
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTL---EDEAVVTIAKISGDTNEEEEEMT 815

Query: 649 VF 650
           + 
Sbjct: 816 LL 817


>gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 894

 Score =  796 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/894 (42%), Positives = 544/894 (60%), Gaps = 77/894 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS  EP+V+  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LM+II  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLNHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ +RIIR SP P  A+ ELM R W++  ++
Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  + +G+DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +  EI++ LDIL+  +R+  II +EL  VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGARRSLVEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D+V  LF+ +TH  
Sbjct: 542 TEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++    E  +   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    RN+ GVRG+ L +G  VI+M +                           
Sbjct: 722 FDENDVRPMG-RNARGVRGMMLDEGQSVIAMLVAEDE----------------------- 757

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                        +Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 758 -----------------------------QQSVLTATENGYGKRTNITEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            A   S+ N  G +VA   V+  D+I+L++DKG L+R  V+EIR   RAT+GV 
Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVSEIREMGRATQGVT 840



 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 101/280 (36%), Gaps = 15/280 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCT 691
                ++       VV  +  G ++   L ++    R   GK A      D +  +    
Sbjct: 538 FDLSTEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVAN 597

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQV-ISMAIVLHADAD 747
             + IL  +  G+     +  +     R S G   V    L +G+++ + +A+       
Sbjct: 598 THDYILCFSNRGRLYWLKVWEV-PQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTF 656

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEK 806
             ++  +M       +  + D           +V+ +  +      L   +  ++  S+ 
Sbjct: 657 PADQYVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDG 716

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTLIR 864
           G   R    D R   R+ +G+R   + +    G  V    V +++Q  ++  ++ G   R
Sbjct: 717 GKAVRFDENDVRPMGRNARGVRGMMLDE----GQSVIAMLVAEDEQQSVLTATENGYGKR 772

Query: 865 VPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIV 903
             + E     R TKG++    ++ + +VV+   +   + +
Sbjct: 773 TNITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEI 812


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/898 (42%), Positives = 561/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  +                                                     C 
Sbjct: 693 GDVAV-----------------------------------------------------CM 699

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 700 DIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D  V ++ ++ VS  GY KR  L  Y+ Q RGG G     + D+   V    +      
Sbjct: 699 MDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  ++ G   +  V  + + S  A G  L+  L   + E + TI     D +       
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTL---EDEAVVTIAKISGDTNEEEEEMT 815

Query: 649 VF 650
           + 
Sbjct: 816 LL 817


>gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 911

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/921 (40%), Positives = 557/921 (60%), Gaps = 35/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  I   D++  K   +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSSEI---DQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +S+R +L++GQGNFGSV
Sbjct: 58  HELKNNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ +DTV+F  NYDGS +EP+VL  R+P +LVNG  
Sbjct: 118 DGDAAAAMRYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSE 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNL + + GC+ ++  P+ D++ L++II+ PDFPTGA I G TGI+  
Sbjct: 178 GIAVGMATSIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGATIYGLTGIRAG 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +VIR  +HIE    + E I+V EIPYQVNK+ ++EKI EL+REK +  IA+LR
Sbjct: 238 YQTGRGRVVIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+VIELKR  +A+VILNQLY+ T LQ  FS+NMVAL   +P    L  IL  
Sbjct: 298 DESDKDGTRIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVDGQPRLLNLKQILSE 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R EVV RRT Y L KAR   H+  G A+A++N+DE++ +I+ S + ++AR  L+ R
Sbjct: 358 FLRHRREVVTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGR 470
           +W +  + ++++  D        +             +LS+ Q RAIL + L  LTGL +
Sbjct: 418 AWQSDLVSEMLNRSDLDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQ 477

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMED 529
           D+I  E   L   I + LDIL+   R+  II  EL++++ +    RR+ I   G  D+ D
Sbjct: 478 DEIIKEYKELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIAD 537

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   +MVVT++H GY+K  P S Y+AQ+RGG+G+     +DEDF+  LF+ +TH  +
Sbjct: 538 EDLIPPREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYL 597

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F++LG  +  KV+RLP G  Q+RG+ + N++ L + E+++ I+P  +      + YV 
Sbjct: 598 MCFTNLGRCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRD---FPEDEYVF 654

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           FAT  G V++ +LS F  ++  G  A+ L   D ++ V   +  +DI+L + LG+ +RF 
Sbjct: 655 FATALGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRFN 714

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                             +     + +S ++   +D +  +    + +   +        
Sbjct: 715 EFYNPTS-----------NDDDESEDVSGSLNDDSDDENSDEFNLLTNKGIRPSGRGSGG 763

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                L  +  +   +  E   +L+     +LT ++ G+GKRT   ++    + G+GI A
Sbjct: 764 LRGMRLPENGRIVSLLVAELGSDLQ-----VLTATQNGYGKRTPIENYSRKGKGGQGIIA 818

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            D  + N  G LV    V+ +D ++L++  G LIR  V ++R   RA +GV + +  +  
Sbjct: 819 IDTGERN--GELVGAALVSPSDDLMLITSGGVLIRTKVEQVRETGRAAQGVRLINLDEGT 876

Query: 890 RVVSVERIRESEIVDEAESTE 910
            +VS+ER+ E    +EAE  E
Sbjct: 877 TLVSIERVAEENSDEEAELVE 897



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 112/272 (41%), Gaps = 43/272 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        ++ V   + LG VK+V LS ++      KG   + ++D D +  + 
Sbjct: 636 EKVSAILPVRDFPEDEYVFFATALGVVKKVQLSAFK--NVSVKGIKAIALKDGDSLVGVA 693

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS------------------ 623
             S  + ++ FS+LG   +   +  P  +     + +   L+                  
Sbjct: 694 KTSGSSDIMLFSNLGKAIRFNEFYNPTSNDDDESEDVSGSLNDDSDDENSDEFNLLTNKG 753

Query: 624 ---------------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L +  RI +++         ++L V+ AT++G  +R  + ++ + 
Sbjct: 754 IRPSGRGSGGLRGMRLPENGRIVSLLV----AELGSDLQVLTATQNGYGKRTPIENYSRK 809

Query: 669 NRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            + G+  + +D+ +   E++     +  +D++L T  G  +R  +  +R   GR + GVR
Sbjct: 810 GKGGQGIIAIDTGERNGELVGAALVSPSDDLMLITSGGVLIRTKVEQVRE-TGRAAQGVR 868

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKH 757
            I+L +G  ++S+  V   ++D +  +  +  
Sbjct: 869 LINLDEGTTLVSIERVAEENSDEEAELVELMD 900


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/895 (42%), Positives = 559/895 (62%), Gaps = 86/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  +                                                     C 
Sbjct: 693 GDVAV-----------------------------------------------------CM 699

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 700 DIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E 
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEED 812



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 4/121 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D  V ++ ++ VS  GY KR  L  Y+ Q RGG G     + D+   V    +      
Sbjct: 699 MDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  ++ G   +  V  + + S  A G  L+  L   + E + TI     D +   +  +
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTL---EDEAVVTIAKISGDTNEEEDTNI 815

Query: 649 V 649
           +
Sbjct: 816 I 816


>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 812

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/893 (42%), Positives = 566/893 (63%), Gaps = 83/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  + I+ EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M++ G+  +K 
Sbjct: 2   ENKSKIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++++Y A+ +MAQD++ R LL++GQGNFG+VDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL D+ K+TVDF PN+D S QEP+VL A+YPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEARMSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V  IDN D   + LME I GPDFPTGA+I+G  GIK AY TGRG + +
Sbjct: 182 PPHNLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGRGKVRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIV+TEIP+QVNK+ ++E+IA+LVR+K++  I+DLRDE++R G RV
Sbjct: 242 RARAEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A++ILN LY+++ L+  FS+  +A+    P+   L   L+ +V  +++V+ 
Sbjct: 302 VIELKRDVNANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKDVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA+ RAH+L GL IA+ N+D V+ IIR S N + A+ +L++           
Sbjct: 362 RRTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q +AIL++RL RLTGL RD I NE   L   I     I
Sbjct: 412 ----------------FALSDIQAQAILDMRLQRLTGLERDKIDNEYKELMERITYLESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  ++L G+IK E+L++KD+   PRRT I     ++  +D    E++ +T++HLGY+KR
Sbjct: 456 LADENKLFGVIKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFVTDL   +TH+ +LFF++ G VYK   + +P G 
Sbjct: 516 LPADTYKSQKRGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPED-ESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G A++N+L LN GE+I   + F  D + + +  Y++FATK G V++  +SDF  IN
Sbjct: 576 RTSKGTAIVNLLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNIN 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SG IA+ L   DE++ V     E DI+L T+ G  +RF  + +R    R + GV+GI+L
Sbjct: 636 KSGLIAINLKDGDELIGVNRTNGEEDIILVTENGMSIRFNENDVRSMG-RTATGVKGITL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +KGD V+SM                                                   
Sbjct: 695 SKGDHVVSM--------------------------------------------------- 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L      +L VSEKGFGKRT + ++R   R+GKGI+  +++  ++ G LV    V++
Sbjct: 704 --DLISNGTDLLVVSEKGFGKRTETEEYRPQIRAGKGIKTYNIN--SKTGKLVGATLVDE 759

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +D++++++  G LIR+ VNEI I  R T GV +  T ++  VVS+ +++  E 
Sbjct: 760 DDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDEEVEVVSIAKLKGEEE 812



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 99/294 (33%), Gaps = 76/294 (25%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ D ++S         I+  ++ GQ  +  +      +   +  +  + L +  
Sbjct: 381 LKIALDNIDRVIS---------IIRGSENGQIAKEKLIEEFALSDIQAQAILDMRLQRL- 430

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE- 792
             +    + +   +  ERI Y++ + A    + G  ++      D   +   +E +  E 
Sbjct: 431 TGLERDKIDNEYKELMERITYLESILADENKLFGVIKDEMLAIKDKYADPRRTEIKPAEG 490

Query: 793 ------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN---------- 836
                 L  +E+  +T++  G+ KR  +  ++   R G+GI A    + +          
Sbjct: 491 EIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQKRGGRGISALTTREEDFVTDLISTTT 550

Query: 837 ----------------------------EIGALVAVFPVNDNDQI--------------- 853
                                       +  A+V +  +N  ++I               
Sbjct: 551 HSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKIARTISFNTDSKENED 610

Query: 854 ----ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +  +  G + + P+++ +       G++  +    + ++ V R    E +
Sbjct: 611 LKYLLFATKSGIVKKTPISDFKNI--NKSGLIAINLKDGDELIGVNRTNGEEDI 662


>gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
 gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE]
 gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
          Length = 904

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/898 (42%), Positives = 548/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G   + Y LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++      + + +   DAD +         S    L+S     +   +   
Sbjct: 720 TAKGVRGMRVS-----FASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVVPETGE 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 775 --------------------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 631 TETVTAILPLTEFPENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 688

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 749 DDNDDSTDSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 803 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +            + E+ +  
Sbjct: 862 ETLVGVVSIEAVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/895 (45%), Positives = 563/895 (62%), Gaps = 68/895 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D+P+I LD +M+II GPDFPT A+I GR GI   Y TG+G  +IR  
Sbjct: 186 NLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAIINGRAGIIQGYRTGKGRAIIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      R+ I++TE+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADVILN LY  T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRQEIADVILNNLYTQTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A++ L+ + W    +K +++
Sbjct: 366 TLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G S     LSE Q +AILELRL RLT L +D I +E   L   I
Sbjct: 426 RAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L+IL+S  RL+ +I+ E + +K +    RRT I+E   D+  ED I  E++VVT+SH
Sbjct: 486 RELLEILASPERLMQVIRDEFVEIKTQFGDERRTEIIESQEDLTIEDLITEENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P+S Y+AQRRGGKG+S   ++DEDFV+ L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP+ S  +RG+ +INIL L +GE I  ++P  E     +  YV  ATK G V++  L+ 
Sbjct: 606 ELPLASRISRGRPIINILPLAEGEEINAMLPVREY---LDGYYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ LD  D ++ V+      DI+L T  G+ VRF  + +R    R + GV
Sbjct: 663 FSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + +   VIS+ +                           D   +T+ +N      +
Sbjct: 722 RGIRIEEEQAVISLVVAHP------------------------DGTILTATENGYGKRTS 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I E                             +R+S R G+G+ +  V++ N  G +V  
Sbjct: 758 IDE-----------------------------YRVSGRGGQGVISIQVNERN--GKVVRS 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V D D+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E+VV +++I +
Sbjct: 787 VQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGMQKIED 841



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 103/232 (44%), Gaps = 15/232 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M      +    V   +  G VK+VPL+ +   R    G   V + D+D +  + 
Sbjct: 629 EEINAMLPVREYLDGYYVFMATKKGTVKKVPLNAFSRPRS--NGIIAVDLDDDDSLVGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      ++ F+  G V +    ++      ARG   +  + + + + + +++       
Sbjct: 687 ITDGSKDIMLFTDAGKVVRFDENKVRPMGRTARG---VRGIRIEEEQAVISLVV------ 737

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILL 698
           +  +  ++ AT++G  +R  + ++    R G+  + +   +   +++     T  ++ +L
Sbjct: 738 AHPDGTILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNERNGKVVRSVQVTDADEAML 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            T  G  VRF ++ + V   RN+ GVR I+++ G++V+ M  +     D ++
Sbjct: 798 ITDKGTLVRFKVNELSVIG-RNTQGVRLINVSSGEKVVGMQKIEDLGEDSND 848



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 499 GIIKQELLSVKDELDTPR--RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +++ +   V+    T R  R   +E    +        +  ++T +  GY KR  +  Y
Sbjct: 702 KVVRFDENKVRPMGRTARGVRGIRIEEEQAVISLVVAHPDGTILTATENGYGKRTSIDEY 761

Query: 557 RAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           R   RGG+G   + + +    V     V+     +  +  G + + KV  L +     +G
Sbjct: 762 RVSGRGGQGVISIQVNERNGKVVRSVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQG 821

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNN 645
              + +++++ GE++  +    +     N+
Sbjct: 822 ---VRLINVSSGEKVVGMQKIEDLGEDSND 848


>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
 gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
          Length = 835

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/889 (42%), Positives = 551/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++++  +T ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   DQDQSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +A+  NP+I ++ LME I GPDFPTGA I+G +GI+ AY TG+GSI+
Sbjct: 183 IPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIVGISGIRRAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE     +  I+V E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 IRSNARIE-DHNGKPWIIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +A+V+LN LY+ T+LQ+ F +N +AL   +P+   L   L  ++  +  V+
Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGRPQVLNLKETLVHYLDHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 362 RRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I NE N L   I E   
Sbjct: 413 -----------------FDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++ELL ++D     RRT I  G   MEDED I R+++V+TVSH GY+K
Sbjct: 456 ILADDEKVLEIIREELLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q+RGG+G  G+   DEDFV  LF+ ++H  +LFF++ G VY+ K + +P  
Sbjct: 516 RIPVSTYRSQKRGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQ 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ++G  +IN+L + + E I+T++P  E ++   N  ++F TK+G  +R +L  F  I 
Sbjct: 576 KRTSKGIPIINLLQIEKDEYISTVIPISEFDA---NHSLIFMTKYGVSKRTELDAFKNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+KL   DE+  V       ++++ TK G  +RF  + +R+   R + GV+G+ L
Sbjct: 633 KGGLFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLMG-RTATGVKGLRL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M I+                                                
Sbjct: 692 QSEDEVVGMDIIEP---------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  IL V+E GFGKRT   ++R  +R GKGI+  +++  ++ G LV++  V  
Sbjct: 706 -------DSDILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNIT--DKNGQLVSLKVVGS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  +++++  G LIR+ V++I   SR T+GV +     +E V +V R+ 
Sbjct: 757 DHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVARVN 805



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 103/274 (37%), Gaps = 26/274 (9%)

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I   L   KDE            +  +           ++ ++  G  KR  L  ++  R
Sbjct: 584 IINLLQIEKDEY-----------ISTVIPISEFDANHSLIFMTKYGVSKRTELDAFKNIR 632

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           +G  G   + +R+ D +  + +      ++  +  G   +     + +    A G   + 
Sbjct: 633 KG--GLFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLMGRTATG---VK 687

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMK 677
            L L   + +  +     D        ++  T++G  +R  + ++ Q +R GK       
Sbjct: 688 GLRLQSEDEVVGMDIIEPDSD------ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNI 741

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D   +++S++    ++D+++ T  G  +R  +S I     RN+ GVR I L   + V +
Sbjct: 742 TDKNGQLVSLKVVGSDHDLMMITTNGVLIRIHVSDI-SKTSRNTQGVRLIRLGDEEFVST 800

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +A V   D D ++                 +TEE
Sbjct: 801 VARVNVNDDDVEDADDPDADEVESDVEHIEETEE 834


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/898 (42%), Positives = 561/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+D+V+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  +                                                     C 
Sbjct: 693 GDVAV-----------------------------------------------------CM 699

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 700 DIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D  V ++ ++ VS  GY KR  L  Y+ Q RGG G     + D+   V    +      
Sbjct: 699 MDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGATVCKEDDE 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  ++ G   +  V  + + S  A G  L+  L   + E + TI     D +       
Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTL---EDEAVVTIAKISGDTNEEEEEMT 815

Query: 649 VF 650
           + 
Sbjct: 816 LL 817


>gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
 gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
          Length = 909

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/911 (41%), Positives = 545/911 (59%), Gaps = 46/911 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +L EV+  C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 HLNEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+D+++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G S+    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  +  +    RRT+IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E IT I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTE---FLENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V     +  I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+       V   A V   D + D                     +      +S
Sbjct: 720 TAKGVRGMR------VTLAAAVDSEDTELDH--------------------DELDDSEES 753

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 754 TDSSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 811

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    ++   +++L+SD GTL+R    E+ +  R  +GV +   +  E +V V  I  
Sbjct: 812 ELVGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSIEA 871

Query: 900 SEIVDEAESTE 910
            E  +  E  E
Sbjct: 872 VEDDEFIEVVE 882


>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
 gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
          Length = 852

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/902 (41%), Positives = 560/902 (62%), Gaps = 87/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ERPSSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  GYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  LL DL K+TVD+R NYDG  +EP+VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESKMSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ DNP I  + LME I GPDFPTG +ILGR+GI+ AY TG+GS++
Sbjct: 183 IPPHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVL 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR V  IE     +E I+V EIP+QVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 IRSVVDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R ASA V+LN LY+ T++Q+ F +NM+AL   +P+  +L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++D ++ +IR S   E AR  LM           
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMT---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q++AIL++RL RLTGL RD I  E  +L   I+E   
Sbjct: 413 ----------------DFNLTERQSQAILDMRLQRLTGLERDKIEEEYQALVKLIEELRY 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L IIK+E+L +KD     RRT I  G  +M EDED I  E  V+T++H GY+
Sbjct: 457 ILANEYRILEIIKEEMLEIKDRFSDKRRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY++K +++P 
Sbjct: 517 KRLPANTYRSQKRGGRGVQGMGTNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  L+N+L +++ E++T ++   E +    + +  F T+ G  +R  ++++  I
Sbjct: 577 YGRTAKGLPLVNLLEISKEEKVTAVIRVKEFKE---DSFFFFTTREGLSKRTPVTNYANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IA+ L   DE++SV+      ++++ TK G  +RFP + IR    R + GVRGI 
Sbjct: 634 RQNGLIAISLREEDELISVKLTDGTKEMVIGTKDGALIRFPETDIRSMG-RTASGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+ M I+   D                                           
Sbjct: 693 LREGDAVVGMEILDPNDN------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GK+T   ++R+ +R G GI+   ++  ++ G LVAV  VN
Sbjct: 711 -----------VLVITEKGYGKQTKESEYRVQSRGGMGIKTCQIT--DKNGPLVAVRTVN 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAE 907
             + I+L++  G LIR+ VN+I    R+T+GV +     DE V +V ++++  ++ +E E
Sbjct: 758 GTEDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKKDIDVPEELE 817

Query: 908 ST 909
             
Sbjct: 818 DD 819



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 20/275 (7%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +      +  G  KR P++ Y   R+   G   + +R+ED +  +
Sbjct: 595 EEKVTAVIRVKEFKEDSFFFFTTREGLSKRTPVTNYANIRQ--NGLIAISLREEDELISV 652

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            +      ++  +  G + +     +      A G   +  + L +G+ +  +      E
Sbjct: 653 KLTDGTKEMVIGTKDGALIRFPETDIRSMGRTASG---VRGIRLREGDAVVGM------E 703

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDIL 697
               N  V+  T+ G  ++ K S++   +R G   K     D    +++V T     DI+
Sbjct: 704 ILDPNDNVLVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGTEDIM 763

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L T  G  +R  ++ I    GR++ GVR I L   D+V++    +  D D  E +     
Sbjct: 764 LITVNGILIRMDVNDIST-TGRSTQGVRLIRLG-DDEVVATVAKVKKDIDVPEEL----E 817

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  I+ + E   S+ ND       + E   E
Sbjct: 818 DDNTETTINENAEANESVANDQVDSIEETPEEDGE 852


>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/899 (44%), Positives = 566/899 (62%), Gaps = 74/899 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I S+  +  + I +VSI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R  L++GQGNFGSV
Sbjct: 60  RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF P YD S  EP+V  AR PN+LVNG  
Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG  I GR GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR   HIEK    RE IV+TEIPYQ NK+ +LEKIA L++EKRI  IA+ R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELK+   A+V++NQLY+ T LQ  F + M+++   +PE   L  IL+ 
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR  L+ R
Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E ++L
Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI     +L   S ++ II++E  ++++     RRT I++   ++  ED I RE+MVV
Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+  YR+QRRGGKG  G    DEDFV+ + + STH ++LFFS+ G V+ 
Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E +     Y++ ATK G V++
Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +  + GKIA+ +   DEIL     T +N++LL ++ G  VRF    IR    R
Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAMG-R 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+LA GD+                          Q+ + + +   +  L  D 
Sbjct: 693 GASGVRGITLAAGDE--------------------------QKGIPADELIGLQVLSGDP 726

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  IL VSE GFGKR+   ++R+  R GKG+ A   S+ N  G
Sbjct: 727 -----------------EASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERN--G 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V +  V D+DQ+++++++G +IR+P+  IR+  R+T+GV +F+   +E+VV+++R+ 
Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRLA 826


>gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900]
 gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
 gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
 gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
          Length = 904

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/898 (42%), Positives = 550/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++      + + +   DAD +         SA   L+S     +   +   
Sbjct: 720 TAKGVRGMRVS-----FASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGE 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 775 --------------------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 631 TETVTAILPLTEFPENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 688

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 803 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +            + E+ +  
Sbjct: 862 ETLVGVVSIEAVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
 gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
          Length = 835

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/892 (43%), Positives = 550/892 (61%), Gaps = 84/892 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+   +V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  +NK Y 
Sbjct: 4   EQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + R+AQD+++R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL K+TVDF PNYD S QEP+VL  ++PN+LVNG  GIAVGMAT IP 
Sbjct: 124 VRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG VA+ID+P +D + L  +I GPDFPT   ILGR GI+ AY TGRG + +R 
Sbjct: 184 HNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFILGREGIRKAYETGRGIVQMRA 243

Query: 253 VSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + +EK     RE+IVVTEIPYQVNKA ++EKIAELV+ ++I  I+DLRDESDR+G RVV
Sbjct: 244 RALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGIRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+    +VILNQLY+ T++QS F + M+A+   +P   +L  +L+ F+  R+E+V R
Sbjct: 304 VELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQPRVLSLRAVLEHFIEHRKEIVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L KA ++AH+L G  IA+ NLDEV+ II+ S NP  A++ LM+R           
Sbjct: 364 RCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMER----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AIL++RL RLTG+ RD I  E   +   I    +IL
Sbjct: 413 ---------------FALSEIQAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   +L IIK EL  ++++   PRRT IV+   D+  ED IV EDMVVTVSH GY+KR 
Sbjct: 458 ASEVEILKIIKSELSEIREKFADPRRTEIVDHRGDLSLEDLIVDEDMVVTVSHSGYIKRN 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +S+YR+QRRGGKG +G+  ++EDFV  LFI STH+ VL F+  G VY  KV  +P G  
Sbjct: 518 AVSLYRSQRRGGKGVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RGKA++N+L L  GE +T+I+P  E        Y++FAT++G V++  L  +      
Sbjct: 578 ASRGKAIVNLLQLQSGENVTSILPVRE---FTEGRYIIFATQNGIVKKTDLMAYANPRSG 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ +D  D ++S      E D+LL ++ G+ +RFP    R    R S GVRG++L  
Sbjct: 635 GIIALTIDEGDRLVSTRLSDGEMDVLLASQNGKAIRFPEKDARAMG-RTSRGVRGMALEG 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVI M +V    A     +                                       
Sbjct: 694 DDQVIGMEVVSDTTAATLVTVT-------------------------------------- 715

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                        E G+GKRT+  ++R   R GKGI     S+ N  G +V +  +ND+ 
Sbjct: 716 -------------EHGYGKRTNLDEYRQQGRGGKGIITIKTSERN--GKVVDIKLINDDF 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++ ++D G ++R  V ++ +  R T+GV +      ER+V+V ++ E E  
Sbjct: 761 DLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVLEPGERIVAVAKLAEKEED 812



 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 97/252 (38%), Gaps = 13/252 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           ++  +  G VK+  L  Y A  R G G   + + + D +    
Sbjct: 594 ENVTSILPVREFTEGRYIIFATQNGIVKKTDLMAY-ANPRSG-GIIALTIDEGDRLVSTR 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      VL  S  G   +            +RG   +  ++L   +++  +    +  +
Sbjct: 652 LSDGEMDVLLASQNGKAIRFPEKDARAMGRTSRG---VRGMALEGDDQVIGMEVVSDTTA 708

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
           +          +HG  +R  L ++ Q  R GK  + + +     +++ ++    + D++ 
Sbjct: 709 ATLVTVT----EHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMF 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G+ +R  ++ + V   RN+ GVR + L  G++++++A +   + D          +
Sbjct: 765 ITDGGKVLRTRVADLSVIG-RNTQGVRLMVLEPGERIVAVAKLAEKEEDNGTAEAEEAAL 823

Query: 759 SAQRRLISGDTE 770
                  + D E
Sbjct: 824 EGGTGEGAQDVE 835


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/887 (42%), Positives = 555/887 (62%), Gaps = 86/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM++S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  LL D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPDI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    + +I+V+E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAQTEIEEYK-GKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  + +V+
Sbjct: 302 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLTLKECLEHYLGHQVQVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM++         
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I NE   L  +I E   
Sbjct: 413 -----------------FSLSYEQAQAILDMRLQRLTGLERDKIENEYKELIAKIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++EL+ VK++ +  RRT I      +EDED I R+++V+T++H GY+K
Sbjct: 456 ILADGEKVLEIIREELIEVKEKFNDERRTVISMNEDHLEDEDLIPRQNVVITLTHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGGKG  G+   D+DF+  LF  ++H ++LFF++ G VY+ K + +P  
Sbjct: 516 RMPISTYRSQRRGGKGIQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L + Q E I+T++P    E   +N Y+ F TKHG  +R +LS F  I 
Sbjct: 576 GRTAKGIPIINLLQIEQDETISTVIPI---EEFDDNSYLFFLTKHGIAKRTQLSSFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   DE+  V       ++++ TK G  +RF  + +R+   R + GV+GISL
Sbjct: 633 RGGLFAITLRGDDELHGVRLTDGGQEVIIGTKHGMAIRFHETDVRLMG-RTAGGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +                                               D  V  +I EE 
Sbjct: 692 SDD---------------------------------------------DHVVGMDILEEN 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            Q        +L V+E G+GKRT   ++R+ NR GKGI+  ++++ N  G+LV++  V+D
Sbjct: 707 HQ--------VLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKN--GSLVSLKVVSD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              I++++  G +IR+ V  I    R T+GV +    + E V +V R
Sbjct: 757 EHDIMIITASGIIIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVAR 803



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 109/274 (39%), Gaps = 15/274 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +       +  ++  G  KR  LS +   RRG  G   + +R +D +  + 
Sbjct: 594 ETISTVIPIEEFDDNSYLFFLTKHGIAKRTQLSSFANIRRG--GLFAITLRGDDELHGVR 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+  +  G   +     + +    A G   +  +SL+  + +  +    E   
Sbjct: 652 LTDGGQEVIIGTKHGMAIRFHETDVRLMGRTAGG---VKGISLSDDDHVVGMDILEE--- 705

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
              N  V+  T++G  +R  + ++   NR GK        +    ++S++  + E+DI++
Sbjct: 706 ---NHQVLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKNGSLVSLKVVSDEHDIMI 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +       GRN+ GV  I + + ++V ++A V   D + +E      + 
Sbjct: 763 ITASGIIIRMHV-EGISTTGRNTQGVTLIRVNEKEEVATVARVDIEDEEIEEIDEVEGND 821

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                 ++ +       + +SS+     +   +E
Sbjct: 822 DGASEEVTSEETASIEEQEESSMPEAEEDLDKEE 855


>gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 897

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/925 (42%), Positives = 562/925 (60%), Gaps = 93/925 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H         + I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDHA--------QEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV
Sbjct: 53  NELKNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF PNYDG+   P VL  + PN+L+NG  
Sbjct: 113 DGDSAAAMRYTEIRMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ A
Sbjct: 173 GIAVGMATNIPPHNLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + IE+    +E I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LR
Sbjct: 233 YRTGRGKIYMRARAEIEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALR 292

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+V+E+KR  S +V+LN LY  T +Q++F +NMVAL+  +P+ F L+ ILKA
Sbjct: 293 DESDKDGMRIVVEVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLDILKA 352

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P  A+  L  +
Sbjct: 353 FVLHRREVVTRRTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQ 412

Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            W   D+ ++++   + +             DG  YL+E Q +AIL+LRL +LTGL  + 
Sbjct: 413 GWQLGDVSEMLERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEK 472

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++DE    RRT I     D++ ED 
Sbjct: 473 ILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDL 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE++VVT+S  GYVK   L+ Y +QRRGGKG+S   M++EDF+  L + +TH  +L F
Sbjct: 533 IEREEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCF 592

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G +Y  KV++LP+ S  ARG+ ++NIL L + ERIT I+P  E E      YV+ AT
Sbjct: 593 STRGRLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFEE---GKYVLMAT 649

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            +G V++  L  + +   +G IA+ L+  DE++ V+     +DI+L +  G+ VRF   A
Sbjct: 650 ANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKA 709

Query: 713 IRV-------------------FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
                                   GR + GVRGI L +G +V+S+ +             
Sbjct: 710 RDSETGAVKIDPETGEEILALRPMGRTATGVRGIRLQEGQRVVSLIVPQ----------- 758

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                        GD   +T+ +N       + +   +    +    + VSE        
Sbjct: 759 -------------GDGAILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSE-------- 797

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
                   R+GK + A  V++ +               +I+L+SD+GTL+R  V E+   
Sbjct: 798 --------RNGKVVGAVQVNESD---------------EIMLISDQGTLVRTRVGEVSTV 834

Query: 874 SRATKGVVIFSTAKDERVVSVERIR 898
            R T+GV +  T  DE VV ++RI 
Sbjct: 835 GRNTQGVRLIRTGADEHVVGLQRID 859


>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 813

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/890 (41%), Positives = 530/890 (59%), Gaps = 83/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +  I  EM+ SYLTY+++VI+GRA+PD+RDGLKPV RRIL+ M + G   +K + K
Sbjct: 7   QRILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+V+ KYHPHG+AA+YD + RMAQD+ LR  L+EGQGNFGS+DGDPPAA RYTE 
Sbjct: 67  SAKTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + AH +L D+ K+TVDF  NYD S +EP VL +R+PN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG + +ID PDI ++ L  II+GPDFPTGA+ILG  GI+ AY TG+GSI +R  
Sbjct: 187 NLGEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALILGHEGIRRAYQTGKGSITLRAR 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     R +IVVTE+PY VNKA ++E+IAEL R+++I  I DLRDESDR G R+ IE
Sbjct: 247 TQIETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+R A+  VILNQL++YT+LQ  F + M+AL   +P    L  +L  ++  + EV+VRRT
Sbjct: 307 LRRDANPHVILNQLFKYTALQQNFGIIMLALVENRPRLLNLKQMLHYYLQHQLEVIVRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DRAH+L GL  A+  +DEV+  IR SP  + AR  LM               
Sbjct: 367 QFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSN------------- 413

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +EVQ + IL+++L RLT L R+ ++ E + L   I     +L+S
Sbjct: 414 -------------FGFTEVQAQHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLAS 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
                 IIKQEL  +K +   PRRTRI     D++ ED I  ED+VVT+SH GY+KRVPL
Sbjct: 461 EKMQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVVVTISHSGYIKRVPL 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR QRRGG+G  G   ++EDF+  +F  +TH  ++FF+  G VY+ +   +P  S QA
Sbjct: 521 STYRQQRRGGRGVQGAGTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG A++N++ L  GE++ T++P  E +      Y+ FAT+ G V++  +++F  +  +G 
Sbjct: 581 RGTAIVNLIPLLPGEKVNTVIPVKEGDQEEG--YIFFATRSGWVKKTAVTEFQNVRSTGI 638

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+KL+  D ++        ++I+L +  G  +RF    +R    R++ GV+GI+L   +
Sbjct: 639 IAIKLEEGDTLVGARLTRGNDEIILVSSAGYALRFHEDDVRPMG-RDTRGVKGITLGPDE 697

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ M  V+                                                   
Sbjct: 698 YVVGMDGVVPG------------------------------------------------- 708

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L VSE G GKRT   ++    R  +G+    +      G LV V  V + + +
Sbjct: 709 ----ADLLVVSETGVGKRTPLTEYPTYKRGARGVITIQLLP-ERHGRLVGVKAVTEGNDL 763

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +LVS++G LIR+PV E+R + R T+GV + +   ++RV +V ++   +  
Sbjct: 764 MLVSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQVVTRDEE 813



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 99/259 (38%), Gaps = 22/259 (8%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPI 710
           VRR +      ++R+  +      LD  DE+++       T E    L +  G       
Sbjct: 363 VRRTQFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSNFG-FTEVQA 421

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY--MKHMSAQRRLISGD 768
             I     R    +    L +    +   I  +      E++ Y  +K    + +   GD
Sbjct: 422 QHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGD 481

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                   +D  ++        ++L   E  ++T+S  G+ KR     +R   R G+G++
Sbjct: 482 PRRTRITPDDGDID-------IEDLIADEDVVVTISHSGYIKRVPLSTYRQQRRGGRGVQ 534

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
                + + I  +   F    +  ++  +D+G + R+  +EI  ASR  +G   V +   
Sbjct: 535 GAGTKEEDFIEHI---FTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARGTAIVNLIPL 591

Query: 886 AKDERVVSVERIRESEIVD 904
              E+V +V  ++E +  +
Sbjct: 592 LPGEKVNTVIPVKEGDQEE 610


>gi|153007330|ref|YP_001381655.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 891

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/907 (43%), Positives = 544/907 (59%), Gaps = 102/907 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 27  QVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTE RL++
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLER 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A FLL D+ K+TVD+ PN+D S  EP+VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D    +I+NP + +  LM  I GPDFPT  +I GR GI+ AY  GRG+I +R  + IE
Sbjct: 207 VLDAVEHLIENPKVTIPELMRFIPGPDFPTAGIIQGRDGIRAAYEKGRGTIQVRARASIE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IA+LVREKR+  I+DLRDES R+G RVVIELKR
Sbjct: 267 VHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q+ F V ++A++G +P    L  +L+ FVA R +VV RRT++ 
Sbjct: 327 DAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQPRILNLKELLERFVAHRRDVVTRRTRFE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+GL IA+ +LDE++ +IR +P+ + AR  L+ R                
Sbjct: 387 LRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKIILRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I+    D   ED I  E+MVVTVSH GYVKR P+S+Y
Sbjct: 481 LMEVIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGG+G++G   RDEDF+  +F+ STH+ +L FS  G VY  KV  +P     ARGK
Sbjct: 541 RAQRRGGRGKTGAATRDEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGK 600

Query: 617 ALINILSLNQGERITTIMPFPEDES-------------------------SWNNLYVVFA 651
            ++N++ L+QGE++  I+P                                    YV  A
Sbjct: 601 PIVNLVQLSQGEKVAAILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFMA 660

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G +++ +L  F +   +G IA+ ++  DE+++      ++ +LL+T  G  +RF  S
Sbjct: 661 TRRGLIKKTRLEQFSRPRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEES 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GV+GI+L  GD V+S   +  A    +                      
Sbjct: 721 DVRAMG-RTAYGVKGITLEPGDAVVSAETIPAAPPQGEPAPT------------------ 761

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ILTV+  G+GKRT   ++R+ +R GKGI    
Sbjct: 762 ----------------------------ILTVTRNGYGKRTELAEYRVQSRGGKGIITIK 793

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDER 890
            ++ N  G +VA   V+D ++++L+++ G LIR+P   I +  R T+GV + +   K+E 
Sbjct: 794 TTERN--GPVVAAALVSDVEEVMLITNGGMLIRMPAKGISVIGRNTQGVRLITLESKEEE 851

Query: 891 VVSVERI 897
           VV V R+
Sbjct: 852 VVGVARV 858


>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  794 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/899 (44%), Positives = 566/899 (62%), Gaps = 74/899 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I S+  +  + I +VSI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R  L++GQGNFGSV
Sbjct: 60  RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF P YD S  EP+V  AR PN+LVNG  
Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG  I GR GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR   HIEK    RE IV+TEIPYQ NK+ +LEKIA L++EKRI  IA+ R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELK+   A+V++NQLY+ T LQ  F + M+++   +PE   L  IL+ 
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR  L+ R
Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E ++L
Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI     +L   S ++ II++E  ++++     RRT I++   ++  ED I RE+MVV
Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+  YR+QRRGGKG  G    DEDFV+ + + STH ++LFFS+ G V+ 
Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E +     Y++ ATK G V++
Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +  + GKIA+ +   DEIL     T +N++LL ++ G  VRF    IR    R
Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAMG-R 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+LA GD+                          Q+ + + +   +  L  D 
Sbjct: 693 GASGVRGITLAAGDE--------------------------QKGIPADELIGLQVLSGDP 726

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  IL VSE GFGKR+   ++R+  R GKG+ A   S+ N  G
Sbjct: 727 -----------------EASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERN--G 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V +  V D+DQ+++++++G +IR+P+  IR+  R+T+GV +F+   +E+VV+++R+ 
Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRLA 826


>gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|294837788|ref|ZP_06782471.1| DNA gyrase, A subunit [Acinetobacter sp. 6013113]
 gi|294858569|ref|ZP_06796338.1| DNA gyrase, A subunit [Acinetobacter sp. 6013150]
 gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058]
 gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
          Length = 904

 Score =  794 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/898 (42%), Positives = 548/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++      + + +   DAD +         S    L+S     +   +   
Sbjct: 720 TAKGVRGMRVS-----FASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVVPETGE 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 775 --------------------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 631 TETVTAILPLTEFPENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 688

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 749 DDNDDSTDSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 803 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +            + E+ +  
Sbjct: 862 ETLVGVVSIEAVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|294840722|ref|ZP_06785405.1| DNA gyrase, A subunit [Acinetobacter sp. 6014059]
 gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056]
 gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059]
 gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
 gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2]
 gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 904

 Score =  794 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/898 (42%), Positives = 549/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++      + + +   DAD +         SA   L+S     +   +   
Sbjct: 720 TAKGVRGMRVS-----FASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGE 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 775 --------------------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 631 TETVTAILPLTEFPENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 688

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 803 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +            + E+ +  
Sbjct: 862 ETLVGVVSIEAVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 877

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/881 (47%), Positives = 607/881 (68%), Gaps = 16/881 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I   ++TDEM+ SYL+YA++VI+ RA+PD RDGLKPVHRRI+F M + G +W+K++ 
Sbjct: 3   DKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L L++GQGNFGS+DGD  AA RYTE
Sbjct: 63  KSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A FL+ D+ K+TVDF+ NYD +  EPVVL A+YPN+LVNG  GIAVGMATNIP 
Sbjct: 123 TRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV++G +  IDN +I +  LM++I GPDFPTG +I+G+  I   Y  GRGSI IRG
Sbjct: 183 HNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIIIGQNDIIPGYEKGRGSIKIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E+ S D++ IV+  +PYQVNK  ++EKIAEL+R+K+I  I+DLRDES++ G R+ I
Sbjct: 243 EIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            +K+  S  +I+NQLY+++ LQ+ F  N +A+N  KPE   L   +K FV FRE+V+ +R
Sbjct: 303 TVKKNVSEAIIINQLYKFSPLQTSFGFNTLAINEKKPELLNLKQFIKIFVDFREKVLTKR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+DR H+L+GL I++ N+DEV+ IIR S +P  A+  L+++ W+    K   D
Sbjct: 363 TLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSKIDKD 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           +++ +   + +     LS+ Q +AILELRL +LT +G ++I +EL  L   I +   IL+
Sbjct: 423 VLEVNE--LSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKILN 480

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +  L  +IK EL  +K +   PRRT++V  + +++ ED I  E ++VTV++ GY+KR P
Sbjct: 481 DKKELQNLIKTELAEIKKKFAVPRRTKLVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTP 540

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  RAQ+RGGKG++G+V R+EDFV+ LF VST T VLFFSS G VY+ K W++P GS  
Sbjct: 541 LTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNT 600

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++GKAL NI  +    +I++I+P P D+S+W + +++F T +G +R+N + DF  I  +G
Sbjct: 601 SKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSILDFENIQANG 660

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAMKL+  D+I+SV+   + +D++L T  G+ +R   S IR+F GR+S G++GI+L   
Sbjct: 661 KIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNN 720

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS+ ++ H     +E   Y+K                  L+N       IS ++ +E
Sbjct: 721 DKVISLTVLNHVTTTSEETKAYIKR------------TRKDDLENTDDTNFEISTKKYEE 768

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           LKL+E+FILT++E G+GKR+SSY+FR S R G+GI     S+ N  G + A + V ++D 
Sbjct: 769 LKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERN--GNIAASYSVKNDDD 826

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           I+L+++KG +IR  V++IRI  R T+GV IF   K+E+VVS
Sbjct: 827 IMLITNKGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVS 867



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 14/238 (5%)

Query: 677 KLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           KL    E + VE    +E  I+  T  G   R P+++IR    R   G  GI   + D V
Sbjct: 507 KLVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTPLTSIRA-QKRGGKGKTGIVTREEDFV 565

Query: 736 I------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                  ++  VL   +           +        G            +   +I    
Sbjct: 566 SQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNTSKGKALANIFPIKADAQISSILPLP 625

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +   K+ F++ V+  G  ++ S  DF     +GK   A  + K ++   +V+V  V  
Sbjct: 626 YDQSTWKDNFLIFVTANGKIRKNSILDFENIQANGK--IAMKLEKDDK---IVSVKIVKK 680

Query: 850 NDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ND ++L +  G  +R+  ++IRI   R++KG+   +   +++V+S+  +       E 
Sbjct: 681 NDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEE 738



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 103/249 (41%), Gaps = 39/249 (15%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +++ ++ V+  G +++  +  +        G+  + +  +D +  + IV  +  V+  + 
Sbjct: 632 KDNFLIFVTANGKIRKNSILDFE--NIQANGKIAMKLEKDDKIVSVKIVKKNDDVMLNTY 689

Query: 595 LGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPF---------------PE 638
            G   +    ++ I     ++G   IN+ + ++   +T +                   +
Sbjct: 690 SGKSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEETKAYIKRTRKD 749

Query: 639 DESSWNNL-----------------YVVFATKHGNVRRNKLSDFIQINRSG---KIAMKL 678
           D  + ++                  +++  T++G  +R+   +F +  R G      +  
Sbjct: 750 DLENTDDTNFEISTKKYEELKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISS 809

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +    I +  +   ++DI+L T  GQ +R  +S IR+  GRN+ GVR   + K ++V+S 
Sbjct: 810 ERNGNIAASYSVKNDDDIMLITNKGQMIRCAVSDIRI-TGRNTQGVRIFKVEKNEKVVSS 868

Query: 739 AIVLHADAD 747
             +  + AD
Sbjct: 869 VCLTDSVAD 877


>gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
 gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
          Length = 904

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/899 (41%), Positives = 544/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  +    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D +                     + +    DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEVEN------------------DESDDNEDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADLNVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    ++++ +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 104/282 (36%), Gaps = 37/282 (13%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  + 
Sbjct: 632 ETVTAILPLTEFPENHYVFMATASGTVKRVDLEQF-ANIRS-NGLRAIELNEEDTLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------- 628
           I   +  ++ FS+ G   +     +      A+G          + LS    E       
Sbjct: 690 ITDGNQQIMLFSNEGKAIRFAETDVRSMGRTAKGVRGMRVSFASSTLSEEDAEVENDESD 749

Query: 629 ------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
                       RI +++  PE         V+ A+ +G  +R  ++DF    R GK  I
Sbjct: 750 DNEDSADLNVVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGVI 803

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           A+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ +
Sbjct: 804 AIKTSERNGELVGAVSIDESKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEE 862

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            ++ +  +   + + +     +              ++++  
Sbjct: 863 TLVGVVSIEAVEDEEEFLEGEVDTSEVDGEDAVSTNDDVSEE 904


>gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 904

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/898 (42%), Positives = 550/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D +                       +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEVEND------------------ESDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 105/283 (37%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 631 TETVTAILPLTEFPENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 688

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    E      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDES 748

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 803 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +         +  + E+ +  
Sbjct: 862 ETLVGVVSIEAVEDEEELLEGEVDTTETDSEEVVSNNEDTSEE 904


>gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 910

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/899 (41%), Positives = 542/899 (60%), Gaps = 46/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G       LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDGRRTEIVESGVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+ +G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVLCFTDVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ +IN+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L+ F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +++A  + ++    +      +  +    +              
Sbjct: 720 TAKGVRGMR-------VTLAAAVDSEDADLDNDDSDDNDDSSDSNV-------------- 758

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 759 -----LSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 811

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +  E +V V  I 
Sbjct: 812 ELVGAVSIDETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSID 870



 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 109/287 (37%), Gaps = 36/287 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VKRV L+ +   R    G   + + +ED +  + 
Sbjct: 632 ETVTAILPLTEFPENHYVFMATASGTVKRVELAQFSNIR--ANGLRAIELNEEDTLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGE----------- 628
           I   +  ++ FS+ G   +     +      A+G     + + +    E           
Sbjct: 690 ITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVTLAAAVDSEDADLDNDDSDD 749

Query: 629 -----------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IA 675
                      RI +++  PE         V+ A+ +G  +R  ++DF    R GK  IA
Sbjct: 750 NDDSSDSNVLSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGVIA 803

Query: 676 MKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +K      E++   +  +  +++L +  G  VR   + +    GRN+ GVR I L+  + 
Sbjct: 804 IKTSERNGELVGAVSIDETKELMLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSDAET 862

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           ++ +  +   + + ++ +  ++ +       +   E     K+D+  
Sbjct: 863 LVGVVSIDAVEVEDEDELELIEGVENPEAQTATSEEVAVEPKDDTPE 909


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/888 (43%), Positives = 541/888 (60%), Gaps = 85/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  V + +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  +K 
Sbjct: 12  ETSGKIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKP 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A + G V+ +YHPHG+AA+Y+ + R+AQD++ R  LI+G GNFGSVDGD PAA RY
Sbjct: 72  YKKSAVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRY 131

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ KDTVDF  NYDGS +EPVVL AR P +LVNG  GIAVGMATNI
Sbjct: 132 TEARLSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNI 191

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V +ID PD DL  + +II+GPDFPT  +I+GR GI+NAY TGRGSI +
Sbjct: 192 PPHNLGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLIIGREGIRNAYRTGRGSIKV 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E  S  + QIVVTEIPYQVNKA +++ I +LVREK+I  I DLRDESDR G R+
Sbjct: 252 RAKAQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRI 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R     VILNQLY++T +Q  F V M+AL   +P    L  +L  ++  ++EV+ 
Sbjct: 312 VIELRRDVQPKVILNQLYKHTQMQENFGVIMLALVDGRPRVLNLREMLTLYLDHQKEVIT 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL +A  RAH++ GL IA+  LDEV+RIIR +PN   A R LM+R          
Sbjct: 372 RRTRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMER---------- 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL RLT L R+ +  E   L   I    ++
Sbjct: 422 ----------------FQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEV 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S +R+  I++ ELL +K +   PRRT+IV    ++E ED I RED+VVT++H GY+KR
Sbjct: 466 LASEARVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+  YR+Q+RGG+G   +  R+ED V D+F+ +TH  +LFF++ G V++ +   +P   
Sbjct: 526 QPVDTYRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAG 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QARG  L+N+L LN+GE IT ++P  E E    + Y++ AT+ G V++  L ++    R
Sbjct: 586 RQARGTPLVNLLYLNKGETITAVIPIRELEE---DSYLLMATRKGIVKKTSLGEYHTSRR 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ LD  D+++ V      N+++L T+ G+ +RF    +R    R + GVRGI+L 
Sbjct: 643 DGLLAINLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPMG-RAARGVRGIALD 701

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+ +  V                                                 
Sbjct: 702 DDDMVVGLVKVR------------------------------------------------ 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++  ++ VSE+GFGKRT+  ++R   R GKGI   +V+  +  G + AV  V   
Sbjct: 714 -----EDAELVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVT--DRTGPVAAVAVVKLE 766

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D+++L+S +G LIR+ V +I    R T+GV +      +RVV++ RI+
Sbjct: 767 DELMLISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDRVVAMARIQ 814



 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 61/258 (23%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  T  G ++R  +  +    R   G  AM     D +  +   T  + +L  T  G+ 
Sbjct: 514 VVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRV 573

Query: 706 VRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            R     I   AGR + G   ++L    KG+ + ++  +   + D               
Sbjct: 574 FRLRGHEI-PEAGRQARGTPLVNLLYLNKGETITAVIPIRELEEDS-------------- 618

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                               ++L  + KG  K+TS  ++  S R
Sbjct: 619 ------------------------------------YLLMATRKGIVKKTSLGEYHTSRR 642

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G  + A ++ + +    LV V     N++++LV+ +G  IR   +E+R   RA +GV  
Sbjct: 643 DG--LLAINLDEDD---DLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPMGRAARGVRG 697

Query: 883 FSTAKDERVVSVERIRES 900
            +   D+ VV + ++RE 
Sbjct: 698 IALDDDDMVVGLVKVRED 715



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DE++ +               G   RF +S  +  A  +    R  +L +         +
Sbjct: 399 DEVIRIIRQAPNEPEACR---GLMERFQLSDKQAKAIVDMRLGRLTALEREKLEEEWQEL 455

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
               A Y E +     + A  R    + +   +    + +         ++L  +E  ++
Sbjct: 456 QKRIAYYQEVLASEARVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVV 515

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           T++ +G+ KR     +R   R G+GI+A    + +    +  +F    +  ++  +++G 
Sbjct: 516 TLTHRGYIKRQPVDTYRSQKRGGRGIQAMGTREED---IVRDIFVTTTHHYLLFFTNQGR 572

Query: 862 LIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903
           + R+  +EI  A R  +G  + +     K E + +V  IRE E  
Sbjct: 573 VFRLRGHEIPEAGRQARGTPLVNLLYLNKGETITAVIPIRELEED 617


>gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 790

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/874 (42%), Positives = 535/874 (61%), Gaps = 86/874 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    +  V I  EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ K+T+D+ PNYDG  QEPVVL AR+PN++VNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+NPD+    LM  I+GPDFPTGA ILGR GI+ AY+TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+   ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEV-NNKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T+LQS F +  +AL   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 362 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L  +I E   
Sbjct: 413 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II +EL  ++      RRT I  G   +EDED I RE++V+T++H GYVK
Sbjct: 456 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGG+G  G+  ++ DFV  LF+ ++H  ++FF+  G VY+ K + +P  
Sbjct: 516 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++P    ES  +  ++ FAT+ G V++  L D+  I 
Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIPI---ESFESGHFLFFATQQGIVKKTPLKDYNNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      +I++ T+ G  + FP   +R    R + GV+GI +
Sbjct: 633 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSMG-RAATGVKGIHI 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D VI M IV                                                
Sbjct: 692 SEDDAVIDMDIVDEN--------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V+ KGFGKRT   ++RI  R GKGI+  +V+  N  G +V +  V +
Sbjct: 707 --------NTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVVGLKVVEE 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           ++ +++++  GT+IR  ++ I I  R T+GV + 
Sbjct: 757 DEDLMIITASGTVIRTSMSGISIMGRNTQGVRLI 790



 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 107/272 (39%), Gaps = 8/272 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
              +++       V+  T  G V+R  +S +    R   G + M   + D +  +     
Sbjct: 492 AIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNS 551

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + ++  T  G+  R     I     R + G   I+L + +Q  ++  V+  ++      
Sbjct: 552 HHYLMFFTDKGKVYRLKAYEIPELG-RTARGTPIINLIQIEQGETVNAVIPIESFESGHF 610

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGKR 811
            +        +                ++     +     +L      I+  + +G    
Sbjct: 611 LFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIH 670

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               D R   R+  G++   +S+ +   A++ +  V++N+ +++V+ KG   R P++E R
Sbjct: 671 FPERDVRSMGRAATGVKGIHISEDD---AVIDMDIVDENNTVLIVTSKGFGKRTPMSEYR 727

Query: 872 IASRATKGVVIFS-TAKDERVVSVERIRESEI 902
           I +R  KG+   + T+K+  VV ++ + E E 
Sbjct: 728 IQTRGGKGIKTLNVTSKNGPVVGLKVVEEDED 759



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 21/242 (8%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+     +    DE    +   +E  ++  T  G   R P+S  R    R   GV G+ 
Sbjct: 482 RRTEITIGEDAIEDE----DLIPREEVVITITHSGYVKRLPVSTYRS-QRRGGRGVVGMD 536

Query: 729 LAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
               D V  + +           D     R+   +     R         +  ++   +V
Sbjct: 537 TKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPELGRTARGTPIINLIQIEQGETV 596

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              I  E  +       F+   +++G  K+T   D+    + G  + A ++ + +    L
Sbjct: 597 NAVIPIESFE----SGHFLFFATQQGIVKKTPLKDYNNIRKGG--LIAINLREDDR---L 647

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + V   + N  II+ + +G  I  P  ++R   RA  GV     ++D+ V+ ++ + E+ 
Sbjct: 648 IGVKLTDGNCNIIMGTRQGMSIHFPERDVRSMGRAATGVKGIHISEDDAVIDMDIVDENN 707

Query: 902 IV 903
            V
Sbjct: 708 TV 709


>gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
 gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
          Length = 904

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 548/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G +D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D +                       +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEVEND------------------ESDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871



 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 106/282 (37%), Gaps = 37/282 (13%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +       V   +  G VKRV L  + A  R   G   + + +ED +  + 
Sbjct: 632 ETVTAILPLNEFPENHYVFMATASGTVKRVDLEQF-ANIRS-NGLRAIELNEEDTLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------- 628
           I   +  ++ FS+ G   +     +      A+G          + LS    E       
Sbjct: 690 ITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESD 749

Query: 629 ------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
                       RI +++  PE         V+ A+ +G  +R  ++DF    R GK  I
Sbjct: 750 DNDDSADSNLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGVI 803

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           A+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ +
Sbjct: 804 AIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEE 862

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            ++ +  +   + + +     +         +  + E+ +  
Sbjct: 863 TLVGVVSIEAVEDEEEFLEGEVDTTETDSEEVVSNNEDASEE 904


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/901 (41%), Positives = 545/901 (60%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  + ++ +IVV EIPYQVNKA ++EKIAELVREKRI  I DLRDESDR G R
Sbjct: 243 MRAKATIE-ENNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L   I E  +
Sbjct: 413 -----------------FGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E+  ++ Y+ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNYLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R    R++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMG-RSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                                                    E  
Sbjct: 692 DDN-----------------------------------------------------DEVI 698

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  +E  IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 699 GMDVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S+  D  E  
Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDSDEEG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/901 (41%), Positives = 545/901 (60%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  + ++ +IVV EIPYQVNKA ++EKIAELVREKRI  I DLRDESDR G R
Sbjct: 243 MRAKATIE-ENNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L   I E  +
Sbjct: 413 -----------------FGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E+  ++ Y+ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNYLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R    R++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSMG-RSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                                                    E  
Sbjct: 692 DDN-----------------------------------------------------DEVI 698

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  +E  IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 699 GMDVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S+  D  E  
Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDADEEG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 904

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 548/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G ++    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++      + + +   DAD +         SA   L+S     +   +   
Sbjct: 720 TAKGVRGMRVS-----FASSTLSEEDADVENDESDDNDDSADSNLVSRIVSLVVVPETGE 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 775 --------------------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 104/282 (36%), Gaps = 37/282 (13%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  + 
Sbjct: 632 ETVTAILPLTEFPENHYVFMATASGTVKRVDLEQF-ANIRS-NGLRAIELNEEDTLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------- 628
           I   +  ++ FS+ G   +     +      A+G          + LS    +       
Sbjct: 690 ITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDESD 749

Query: 629 ------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
                       RI +++  PE         V+ A+ +G  +R  ++DF    R GK  I
Sbjct: 750 DNDDSADSNLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGVI 803

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           A+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ +
Sbjct: 804 AIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEE 862

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            ++ +  +   + + +     +            + E+ +  
Sbjct: 863 TLVGVVSIEAVEDEEEFLEGEVDTTETDSEEAVSNNEDASED 904


>gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 904

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 433 LID------DSSYTIGSDGTMYLSE-------VQTRAILELRLARLTGLGRDDIRNELNS 479
                    D       D    LSE        Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+ +DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ +IN+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTE---FLENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VDLEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++     I+   +   DA+ +                     + +    DS
Sbjct: 720 TAKGVRGMRVS-----IASNTLSEEDAEIEN--------------------DESDDNEDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 AELSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    ++++ +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii SDF]
 gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii]
          Length = 904

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/898 (42%), Positives = 549/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPT  +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G SD    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FLENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++      + + +   DAD +         SA   L+S     +   +   
Sbjct: 720 TAKGVRGMRVS-----FASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGE 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 775 --------------------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 105/283 (37%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +      +    V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 631 TETVTAILPLTEFLENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 688

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    +      
Sbjct: 689 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 748

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 749 DDNDDSADSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 802

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 803 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 861

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +            + E+ +  
Sbjct: 862 ETLVGVVSIETVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4]
 gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4]
          Length = 960

 Score =  791 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/921 (41%), Positives = 559/921 (60%), Gaps = 42/921 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S++I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++ NKKY KC
Sbjct: 29  HMISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKC 88

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ G  MG YHPHG++AIYDA+ R+AQ +S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 89  AKVVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 148

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  ++ D+  DTVDF PNYD S  EP VL ARYPN++VNG  GIAVGMATNIP HN
Sbjct: 149 LMKIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHN 208

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++ C+ +++NP   L  ++E ++GPDFPT   I G++GI NAY TGRG  ++R   
Sbjct: 209 LTEVINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIYGKSGIANAYRTGRGKFLMRAKC 268

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E  SG RE I+V+EIPYQVNK  ++++IAELV EK I DI+D+RDESDR G R+VIEL
Sbjct: 269 SRENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIEL 328

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +++LNQL+++TS+Q  FS+  +A++  +P    L   ++AF+  R +VV RRT 
Sbjct: 329 KRTAQPEIVLNQLFKHTSMQESFSMIFLAVHNGRPVELPLPDAIRAFIDHRVDVVRRRTA 388

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +LLNKARDR H+L+G  IA+ +LD V+R IR S +   AR  L +     +      +L 
Sbjct: 389 FLLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELA 448

Query: 435 ----DDSSYTI----------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               D S Y I          G+ GT+ LS  Q   ILEL+L RLT L  D++  EL  +
Sbjct: 449 GVTLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQV 508

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E   IL+S  +L  +I +EL  V+++    RRT+I++   ++  ED I  E + V
Sbjct: 509 RENIAEYESILASDKKLRRVIIKELEEVREKYGDVRRTQIIDESSELTLEDLIADEQVAV 568

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KR P+S YR QRRGG GR G+  R+EDFV  L + STH  +L F++ G V+ 
Sbjct: 569 TVSHSGYLKRTPISTYRQQRRGGTGRIGMKTREEDFVAQLIVDSTHAYLLCFTNSGRVFW 628

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K++ +P      +GK + ++L+L  GE++   +P    E +  + Y+ FAT+ G V++ 
Sbjct: 629 LKIYEIPDVLAAGKGKHIASLLALQPGEKVVAYLPVRNLEDA--SKYIFFATREGIVKKT 686

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF---- 716
            L DF  +   G IA+ +D  DE+++V   + E+ + L T+ G  VRF            
Sbjct: 687 PLPDFSNVMARGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKYDPEKSGGL 746

Query: 717 --AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ G +GI+L KGD VI  A+    +    +R         ++ L +   E   +
Sbjct: 747 RPMGRNAGGNKGITLKKGDYVIGAAVTDSREKRDGQRDELAVATKLEKELAAVRAEIAAA 806

Query: 775 LKNDSSVEGNISEERCQE------------------LKLKEQFILTVSEKGFGKRTSSYD 816
                    + +EE  +                   L L    IL+V+E G+GKRT   +
Sbjct: 807 EAELQKARDSKNEEEAKAARKALDVVEEKLCKLDGKLGLSPCLILSVTENGYGKRTDVEE 866

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +R++NR G G+     S   + G + ++  V++  +++ +S  G +IR+  N IR A R+
Sbjct: 867 YRLTNRGGSGVINMKASA--KTGKVSSIQLVDETTELMAISQFGKIIRIDTNTIRAAGRS 924

Query: 877 TKGVVIFSTAKDERVVSVERI 897
           T+GV + +   D++V +   I
Sbjct: 925 TQGVKLLNLDTDDKVAAAVTI 945


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/892 (43%), Positives = 560/892 (62%), Gaps = 84/892 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I    I+ EM++SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 4   EENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPDKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 64  YRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGMAT+I
Sbjct: 124 TEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMATSI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE +D  V +IDNPD D+D LM+ I+GPDFPTGA+I+G+  I  AY TGRG + +
Sbjct: 184 PPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIMGKDSIAEAYRTGRGKVKV 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIVVTEIPYQVNKA ++E+IAELV++KRI  I+DLRDES+R G R+
Sbjct: 244 RSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGMRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A+++LN LY+++ L+  FS+ M++L    P    L  IL  +V  +++VV 
Sbjct: 304 VIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNGVPRILNLKQILHYYVEHQKDVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA+ RAH+L GL IA+  +DEV+ +IR S N + A+  LM +          
Sbjct: 364 RRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDK---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL +LTGL R+ +  E N L  +I+    I
Sbjct: 414 ----------------FKLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LLG+IK E+L +K +    RRT I     +++ +D I  E++ +T++H GY+KR
Sbjct: 458 LADEQLLLGVIKDEILEIKKKYSDARRTEIRHAEGEIDIKDLIDDEEITITLTHFGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y++QRRGG+G S + +R+EDFV  L    TH  +LFF++ G V++   + +P G 
Sbjct: 518 LPLDTYKSQRRGGRGISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGK 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L   E+I T++    D  + ++ Y++ ATK G V++ K S+F  IN+
Sbjct: 578 RQAKGTAIVNLLQLGPNEKIATLIEV--DGRADDDSYLLLATKKGIVKKTKRSEFKNINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ V+T   E D+LL T  G  +RF    IR    R ++GV+GI+L+
Sbjct: 636 SGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRPMG-RTAMGVKGITLS 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+SM+                                                   
Sbjct: 695 EGDKVVSMS--------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L  + + +L VS+ G+GKRT   ++R   R+GKGI+  ++S+  + G +V    VN+ 
Sbjct: 704 --LSDEGEDLLVVSQNGYGKRTDINEYRSQIRAGKGIKTYNMSE--KTGEIVGATMVNNE 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D+++L++  G LIR+ V++I +  R T GV +  T  +  VVS+ +I   E 
Sbjct: 760 DELMLINSDGVLIRLRVDDISVFGRITSGVKLMKTDDEVNVVSIAKIDTEEE 811



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 101/260 (38%), Gaps = 26/260 (10%)

Query: 658 RRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           RR K        R+  +    + LD  DE++S         ++ ++   Q  +  +    
Sbjct: 364 RRTKFELNKAQARAHILEGLRIALDYIDEVIS---------LIRSSANTQIAKSGLMDKF 414

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             +   +  +  + L K    +    V     +  ++I Y++ + A  +L+ G  ++   
Sbjct: 415 KLSEIQAQAILDMRLQKL-TGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEIL 473

Query: 775 LKNDSSVEGNISEERCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                  +   +E R  E       L   E+  +T++  G+ KR     ++   R G+GI
Sbjct: 474 EIKKKYSDARRTEIRHAEGEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQRRGGRGI 533

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
            A  V + + +  L+       +++++  +++G + R+   E+    R  KG   V +  
Sbjct: 534 SALTVREEDFVKHLITTRT---HNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIVNLLQ 590

Query: 885 TAKDERVVSVERIRESEIVD 904
              +E++ ++  +      D
Sbjct: 591 LGPNEKIATLIEVDGRADDD 610


>gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A
 gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 842

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/912 (38%), Positives = 523/912 (57%), Gaps = 90/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     ++N     +   +A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + ++Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KLSDF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+   + D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNEDDRLLSLNVVRP------------------------------- 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + ++L  +  G+ KRTS  ++ +  R GKGI      +
Sbjct: 721 ----------------------DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDR 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G+LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ + ++++
Sbjct: 759 --KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAI 816

Query: 895 ERIRESEIVDEA 906
            R  + +   E+
Sbjct: 817 ARNADEDEAAES 828


>gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
 gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
          Length = 836

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/916 (37%), Positives = 519/916 (56%), Gaps = 90/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N + D +    A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGS+ +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRIV    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPNERIAQVIQIKSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSRLTDFDSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNADDELLSLNVVRP------------------------------- 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + ++L  +  G+ KRTS  ++    R GKGI      +
Sbjct: 721 ----------------------DTYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDR 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 R--RGNLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAI 816

Query: 895 ERIRESEIVDEAESTE 910
            R  E+    +  +T+
Sbjct: 817 ARNAEAGDSTDEVNTD 832


>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
 gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
          Length = 893

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/904 (40%), Positives = 541/904 (59%), Gaps = 41/904 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL       +L D+  +TVDF  N+DGS QEP+VL +R P +LVNG  GIAVGMATNIP
Sbjct: 125 CRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++G +A+I NP+I    LM+ I GPDFPTGA ILG+  I+ AY TGRGSI +R
Sbjct: 185 PHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQILGKASIREAYTTGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        D+E I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR G
Sbjct: 245 GVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  +L   L  F+ FR E
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLSLKQFLSVFLDFRIE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL+         
Sbjct: 365 TITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELID-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSEVQ+ AIL+++L RLT L    I  E   L  +I + 
Sbjct: 417 ------------------TYGLSEVQSDAILQMQLRRLTALEAQKITQEHEELLEKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           LDIL+ R R+L II+ E+  +K +  +PRRT I     ++++ D I  E  ++ ++  GY
Sbjct: 459 LDILAKRERILEIIQTEVAEIKLKFASPRRTIIEHAEGEIDETDLIANEQAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S + AQ R  +G++G  M+++D V        H SVLFFS  G VY  + +++P
Sbjct: 519 IKRMPVSTFEAQSRATRGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ARG  ++ +L +   E+IT+I+   E     N  Y++  T+ G +++  LS F  
Sbjct: 579 VSSRTARGTPIVQLLPIPIEEKITSIVSVTE---FSNEEYLIMLTRSGFIKKTVLSAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V     ++ I++ ++ G  + F  +  ++   GR + GV+ 
Sbjct: 636 IRANGLIAISLEEGDQLRWVRLARVDDSIIIGSRQGMTIHFRTNHEQLRPVGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  GD++I M I+  +       +        +  L     E    ++     +    
Sbjct: 696 MKLRAGDELIGMDILPSSIVASIAELETEDSELEEEELEVSAQEIEVQVEEIEGSDA--- 752

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E       +  + L ++  G+GKR     FR+  R+GKG+ AT          + A+  
Sbjct: 753 -EEIPTASSQGPWALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAALRI 811

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN+ND++++V+ +G +IR  VN I   SR   GV +    +D+ +V+V  +  S   +E+
Sbjct: 812 VNENDELMIVTSRGIIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSG--EES 869

Query: 907 ESTE 910
           ES E
Sbjct: 870 ESDE 873



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVTD 579
           G    E      +    + ++  GY KRVP++ +R QRR GKG +    + +   D+V  
Sbjct: 749 GSDAEEIPTASSQGPWALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAA 808

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-E 638
           L IV+ +  ++  +S G + ++ V  +   S  A G  +     L++ + I  +   P  
Sbjct: 809 LRIVNENDELMIVTSRGIIIRQTVNAISTQSRNATGVRVQ---RLDEDDSIVAVALVPLS 865

Query: 639 DESSWNNLYVVFATKHG 655
            E S ++  V   +  G
Sbjct: 866 GEESESDEAVDLVSVSG 882


>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
 gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
          Length = 837

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/889 (42%), Positives = 541/889 (60%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     ++ ++I++EM+ S+L YA++VI+ RA+PD+RDG+KPVHRRIL+ M  +G+  +K
Sbjct: 3   DINRPRVSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDG+ +EPVV  AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP H+LGE +D  +A+  NPDI +D +ME  + GPDFPT   ILGR+GI+ AY TG+GSI
Sbjct: 183 IPPHHLGETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQILGRSGIRKAYETGKGSI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR   +IE+   D+E I+VTE+PYQVNKA ++EKIAELVR+K++  I DLRDESDR G 
Sbjct: 243 TIRAKLNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+R A+A+V+LN LY++TSLQ+ F +NM+AL   +P    +   L  ++  ++ +
Sbjct: 303 RIVIELRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQPRVLNIKQCLSYYLEHQKVI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ LNKA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM+R        
Sbjct: 363 IKRRTQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL R+ I +E   L   I+E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLQRLTGLEREKIEDEYKELQALIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   ++L II++EL  +K++    RRT IV  G    EDED I  E++V+T++H GY
Sbjct: 457 AILADEEKVLEIIREELTEIKEKYKEDRRTEIVAGGAGFFEDEDLIPEENIVITLTHQGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YR Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRTQKRGGRGIQGMGTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L + +GE +  ++   + +      Y+ F TKHG  +R  L  F  
Sbjct: 577 EFSRTAKGIPIINLLQVEKGEWVNAVISVNQFDEE---AYLFFTTKHGIAKRTSLEKFRN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G IA+ L   DE++SV     + ++++ TK G  +RF  + IR    R + GV+GI
Sbjct: 634 IRKGGLIAVGLREEDELISVRLTDGQKEMMIATKNGYLIRFEETQIRSMG-RTAAGVKGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL   D V+SM I+                                              
Sbjct: 693 SLRGDDVVVSMEIIEPGSK----------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+ KGFGK+T   ++R  NR GKG+    + +  + G +VAV  V
Sbjct: 712 ------------ILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDE--KTGNVVAVKAV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           N ++ ++L++  G LIR+ V +I    R TKGV +      E V +V R
Sbjct: 758 NGDEDLMLITIAGVLIRIQVQDISQTGRNTKGVHLIRLQDGEEVATVTR 806


>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
 gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
          Length = 812

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/891 (40%), Positives = 550/891 (61%), Gaps = 85/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G   +K Y K 
Sbjct: 7   KVVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + G+VMG+YHPHG++AIYDA  R+AQD+S R +LI+G GNFGS+DGDP AA RYTE R
Sbjct: 67  AGLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K   ++L D+ K+TVDF+PNYD   +EP VL +R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MAKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++D  + +I+NP   ++ LM +++GPDFPTGA+I+GR GI+ AY TGRGSI++R  +
Sbjct: 187 LAEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIMGREGIRQAYTTGRGSIIMRAKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK +G++ +I+V EIPYQVNK+ +LE+IAELVR+KR+  I DLRDESDR+G ++VIEL
Sbjct: 247 RIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +  ++LNQL++YT +Q  F V M+AL    P+   L  +L  ++  +++V+VRRT+
Sbjct: 307 RRDVNPQIVLNQLFKYTQMQETFGVIMLALVDGVPKVLNLRDMLYYYLEHQKDVIVRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA  RAH+L GL IA+ N+D ++ IIR S + + AR  LM                
Sbjct: 367 YDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILM---------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                     G   LSE Q +AIL++RL RL GL R+ I NE   L   I     +L S 
Sbjct: 411 ----------GEFNLSEKQAQAILDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L IIK+E+  +K++   PRRT I     D++ ED I  ED V+T++H GY+KR+P++
Sbjct: 461 KMVLDIIKKEISEIKEKFADPRRTEITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVN 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+AQRRGG+G +G+  +++DFV  LF+ +TH ++LFF+  G VY+ K   +P  S  A+
Sbjct: 521 TYKAQRRGGRGVTGMGTKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAK 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L++   E++  ++P  E  +   + Y+  AT+ G V++  L  +  + + G I
Sbjct: 581 GTAIVNLLAITGDEKVNAVIPVKEFAA---DQYLFTATRSGIVKKTSLQHYDTVRKEGLI 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++ V+    ++DILL T+ G  VRF  + +R    R + GV+GI L +GD 
Sbjct: 638 ALTLDEGDELIGVKLTDGKSDILLATRNGMAVRFNETNVREMG-RTARGVKGIELTQGDF 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+++  V   D                                                 
Sbjct: 697 VVALDAVKDDD------------------------------------------------- 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++E G GKRT   ++R  NR GKGI A  ++  N+ G +  +  V   D+++
Sbjct: 708 ----ELLMITELGMGKRTPLSEYRKQNRGGKGILAMRLT--NKTGLMAGIKVVRPGDELM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++S +G +IR+ V+EI + SR T+GV I     +++VV++ R+   E  +E
Sbjct: 762 VISAEGVIIRLNVDEINVLSRVTQGVSIMRMNANDKVVALARVAMREEDEE 812


>gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 832

 Score =  789 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 560/900 (62%), Gaps = 86/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + +   I S +IT E+++S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   DIQHGHIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGK+HPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+ PNYDGS  EP+VL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +DG +AV DNP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGS+ 
Sbjct: 183 IPPHHLGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ S  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR G R
Sbjct: 243 IRAKVEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN L++ T++QS F VNM+AL   +P+  +L  +L  ++  ++ V+
Sbjct: 303 IVIEVRRDANANVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA +RAH+L GL IA+ ++DE++ IIR S + E AR +LM+R         
Sbjct: 363 KRRTAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L   I E   
Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+  +K+     RRT I  G L+ +EDED I RE+ V+T++H GY+
Sbjct: 457 ILADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLEMIEDEDLIPRENSVLTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L++++GE +T ++   E +    + Y +F TK G  +R  +  F  I
Sbjct: 577 FGRQAKGLPIVNLLNIDKGEHVTAMIRVTEFKE---DAYFIFTTKTGVTKRTPVDQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV       +I++ T  G  VRF    IR    R++ GVRGI 
Sbjct: 634 RTNGLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDDIRSMG-RSAAGVRGIK 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+ M I+                                               
Sbjct: 693 LREGDFVVGMEILEPG-------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +E  ++T +  G  KRT   ++R+ +R G G++   ++  ++ G + AV  V+
Sbjct: 709 -------QEILVVTENGYG--KRTPESEYRLQSRGGLGLKTMQIT--DKNGKMCAVKAVD 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++  G LIR+ VN+I +  R+T+GV +   A+ E V +V R+++ E   + E 
Sbjct: 758 GSEDIMLITINGMLIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVARVKKEEDAPDDEE 817



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 15/248 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M        +   +  +  G  KR P+  +   R    G   + +R++D +  + 
Sbjct: 596 EHVTAMIRVTEFKEDAYFIFTTKTGVTKRTPVDQFANIR--TNGLIAITLREDDDLISVH 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +S G + + K   +      A G   +  + L +G+ +  +      E 
Sbjct: 654 LTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSAAG---VRGIKLREGDFVVGM------EI 704

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                 ++  T++G  +R   S++   +R G   K     D   ++ +V+      DI+L
Sbjct: 705 LEPGQEILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCAVKAVDGSEDIML 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  ++ I V   R++ GVR I LA+G+ V ++A V   +   D+     +  
Sbjct: 765 ITINGMLIRMDVNDISVIG-RSTQGVRLIRLAEGEYVATVARVKKEEDAPDDEEIDSEIE 823

Query: 759 SAQRRLIS 766
                 I 
Sbjct: 824 GESDSGID 831


>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
 gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
          Length = 795

 Score =  789 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/870 (42%), Positives = 536/870 (61%), Gaps = 86/870 (9%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+ K +  L+ D+ K+T+D+
Sbjct: 61  YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NPDI +
Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT  +ILGR+GI+ AY TGRGSI++R    IE+    ++ I+VTE+PY
Sbjct: 181 AELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIAELVR+K+I  I DLRDESDR G R+V+E++R A+A+V+LN LY++T+L
Sbjct: 241 QVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +NM++L   +P+   L   L  ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 301 QTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLRIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LDEV+ +IR S   + AR+ LM+R                            LSE Q
Sbjct: 361 LDHLDEVITLIRSSKTADIARQGLMER--------------------------FGLSEKQ 394

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E   L   I E   IL+   ++L II++EL  VK+  +
Sbjct: 395 AQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFN 454

Query: 514 TPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT I  G ++ +EDED I  +++ +T++H GY+KR+P S Y+ Q RGG+G  G+   
Sbjct: 455 DKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTN 514

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+DFV  L   STH  +LFF++ G VY+ K + +P  S  A+G  +IN+L +++GE +  
Sbjct: 515 DDDFVEQLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNA 574

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  E     ++ Y+ F TK+G  +R  LS F  I  +G IA+ L   DE++SV   + 
Sbjct: 575 IIPIRE---FGDDQYLFFTTKYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSG 631

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           + DI++ T  G  +RF    +R    RN+ GV+ I+L   DQV+ M IV           
Sbjct: 632 DKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKAITLGDEDQVVGMEIVEE--------- 681

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       +  +L V++ G+GKRT
Sbjct: 682 --------------------------------------------DMNVLIVTKNGYGKRT 697

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              ++R+ +R GKG++  +++  ++ G LVAV  V   + I+L++  G +IR+PV++I  
Sbjct: 698 PIEEYRLQSRGGKGLKTCNIT--DKNGKLVAVKSVTGEEDIMLITAAGIIIRMPVDQISQ 755

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEI 902
             R T+GV +     ++ V +V + ++ E 
Sbjct: 756 MGRNTQGVRLIRLENEQEVATVAKAQKDED 785


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  789 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/891 (43%), Positives = 553/891 (62%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I +  I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   DQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L DL K+TVDF PNYDG   EPVVL ARYPN+LVNG GGIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I+NPDI    LM+ I+GPDFPT   ILGR+GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+  G++ +I+V E+PYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEI-GNKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T++QS F +NM+A+   +P+   L  +L  ++  + EV+
Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+  Q +AIL++RL RLTGL R+ I NE N L  +I E  +
Sbjct: 413 -----------------FSLTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +K      RRT I  G   + DED I RED+++TV+H GY+K
Sbjct: 456 ILANEHLVLNIISEELNELKGRFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +DEDFV  LFI ++H  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E    + Y+ FAT+HG +++  L D+  I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPI---EEFVEDSYLFFATQHGIIKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + ++++ T  G  +RFP S +R    R++ GV+GISL
Sbjct: 633 KGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMG-RSATGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D VI M                                                   
Sbjct: 692 DESDAVIGM--------------------------------------------------- 700

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++   +  IL V+ KG+GKRT + D+RI +R GKGI+  +V+  ++ G +V +  V  
Sbjct: 701 --DIVNTDLDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTINVT--DKNGPVVGLKVVKA 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GTLIR  + EI    R T+GV + +   D+ V +V R  ++
Sbjct: 757 EEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVCRANKN 807



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 115/303 (37%), Gaps = 31/303 (10%)

Query: 507 SVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            + D   T R T I+        E +  +   +  V +  +   +  G +K+ PL  Y  
Sbjct: 571 EIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFVEDSYLFFATQHGIIKKTPLDDYAN 630

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R+G  G   + +R++D + ++ +      ++  ++ G   +     +      A G   
Sbjct: 631 IRKG--GLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSMGRSATG--- 685

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +  +SL++ + +  +     D      L ++  T  G  +R    D+   +R GK    +
Sbjct: 686 VKGISLDESDAVIGMDIVNTD------LDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTI 739

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  D+   ++ ++    E D+++ T  G  +R  +  I     RN+ GVR I++   D V
Sbjct: 740 NVTDKNGPVVGLKVVKAEEDLMIITASGTLIRTSMGEISTMG-RNTQGVRLINIRDDDSV 798

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            ++            +      +        G  EE T    + ++E N  +    + + 
Sbjct: 799 ATVC--------RANKNEEQDELLEDLLEDGGTGEEPTLSSAEPTLEVNTEDTEGNDSES 850

Query: 796 KEQ 798
            E 
Sbjct: 851 SED 853


>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
 gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
          Length = 892

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/902 (43%), Positives = 563/902 (62%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   I E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELENDESISTMIAVKDLESEDD--YLVFATRKGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     E DIL+ T     +RF   A+R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    R+ +GV +     D+ V +V ++++ +  DEAE
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAE 820

Query: 908 ST 909
           S 
Sbjct: 821 SD 822


>gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K]
 gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K]
          Length = 906

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/918 (42%), Positives = 541/918 (58%), Gaps = 104/918 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL+K
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ K+TVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT   I GR GI+ AY  GRG+I +R  + +E
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 327 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 481 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNN------------------------LYVVFAT 652
            ++N++ L  GE++  I+P                                   +V   T
Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G IA+ ++  DE+++       + ILL+T  G  +RF  S 
Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R + GV+GI+L  GD+V+                                    
Sbjct: 721 VRPMG-RTAYGVKGITLEAGDEVV------------------------------------ 743

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        +         +   +LTV+  G+GKRT   ++R+  R GKG+     
Sbjct: 744 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV + +   K+E+V
Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850

Query: 892 VSVERIRESEIVDEAEST 909
           V V R+ E+    EAE  
Sbjct: 851 VGVARVAET--TPEAEEA 866


>gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 907

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/918 (42%), Positives = 545/918 (59%), Gaps = 104/918 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 28  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL++
Sbjct: 88  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ K+TVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT   I GR GI+ AY  GRG+I +R  + +E
Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 267

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 328 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 387

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 388 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 431

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 432 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 481

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 482 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 541

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 542 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601

Query: 617 ALINILSLNQGERITTIMPFP--------EDESSWNN----------------LYVVFAT 652
            ++N++ L  GE++  I+P           DE++                    +V   T
Sbjct: 602 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVT 661

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G IA+ ++  DE+++       + ILL+T  G  +RF  S 
Sbjct: 662 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 721

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R + GV+GI+L  GD+V+                                    
Sbjct: 722 VRPMG-RTAYGVKGITLEAGDEVV------------------------------------ 744

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        +         +   +LTV+  G+GKRT   ++R+  R GKG+     
Sbjct: 745 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 793

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV + +   K+E+V
Sbjct: 794 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 851

Query: 892 VSVERIRESEIVDEAEST 909
           V V R+ E+    EAE  
Sbjct: 852 VGVARVAET--TPEAEEA 867


>gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
          Length = 892

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/902 (43%), Positives = 563/902 (62%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   I E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELENDESISTMIAVKDLESEDD--YLVFATRKGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     E DIL+ T     +RF   A+R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    R+ +GV +     D+ V +V ++++ +  DEAE
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAE 820

Query: 908 ST 909
           S 
Sbjct: 821 SD 822


>gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
 gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
          Length = 865

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 535/903 (59%), Gaps = 54/903 (5%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S D    + I  ++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M  MG+ 
Sbjct: 14  SGDGGNPQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLL 73

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+K+VKCA++ GEV+GKYHPHG++A+YDA+ RMAQD+SLR  L++GQGNFGSVDGDPPA
Sbjct: 74  HNRKHVKCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPA 133

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+   A  LL D+ KDTVDF  N+D +  EP++L  + PN+L+NG  GIAVGM
Sbjct: 134 AYRYTEARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGM 193

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E+VD C+ +++NP   LD +++ ++GPDFPTG  I G+ GIKNAY  GRG
Sbjct: 194 ATNIPPHNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHGKGGIKNAYQNGRG 253

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             ++R    +E     ++ IVVTEIPYQVNK+ +++KIA+LV +K I +I+D+RDESDR 
Sbjct: 254 RFMMRAKVAVEHLPN-KDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRD 312

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A  +++LNQLY++T +Q  FS+  +A+   +P+   L+  L  F+  R 
Sbjct: 313 GMRIVIELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMGLVQALNHFIDHRI 372

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRT YLL KA+DR H+L G  +A+ +LD V+ IIR S N   AR  L+        
Sbjct: 373 DVVRRRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKK- 431

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  I+ +      D     S  Q  AILEL+L RLT L  D+I +EL  +   I E
Sbjct: 432 -----ITINTTGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  +L  +I +EL  ++ +    RRT I +   ++  ED I  E + VTVSH G
Sbjct: 487 YESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLIADEQVAVTVSHSG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR P+S YR QRRGG GR G+  RDEDFV  +F+ STH  +L F++ G VY  KV+ +
Sbjct: 547 YLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEV 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +   +GK + N+++L  GE +  I+P    E    + YV F T+ G V++  L DF 
Sbjct: 607 PEIAAAGKGKHIGNLVALQPGESVRAILPVKSLEE--ESRYVFFTTRKGTVKKTALVDFS 664

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +   G IA+ +D  DE+++ +       + L +  G  +RF  + +R+   R + GVRG
Sbjct: 665 NVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIMG-RPAYGVRG 723

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + +   D ++ MAI                +                             
Sbjct: 724 MDIGAKDYIVGMAITPKERKKGKNGGADTAN----------------------------- 754

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL+V+E G+GKRT   ++R+  R GKG+     ++ N  G +VA+  
Sbjct: 755 ------------LILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERN--GKVVAIML 800

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V ++ + +++S  G +IR   + IR A R+T+GV +      ++V +   I + E   EA
Sbjct: 801 VTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDEKA-EA 859

Query: 907 EST 909
           E T
Sbjct: 860 EPT 862


>gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
          Length = 978

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/929 (41%), Positives = 559/929 (60%), Gaps = 41/929 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A
Sbjct: 50  MNSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 109

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G VMG YHPHG++AIYD + R+AQ +SLR  LI+GQGNFGSVDGDPPAA RYTE R+
Sbjct: 110 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRM 169

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  DTVDF PNYD S  EP VL AR PN++VNG  GIAVGMATNIP HNL
Sbjct: 170 TRLAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNL 229

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV++  +A++         DL+ ++E ++GPDFPTG  + GR  +   Y TGRG  ++R
Sbjct: 230 TEVLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLYGRGNLVQTYKTGRGRFMMR 289

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E+ +G R+ I+ TEIPYQVNK+ ++++IAELV EK + DI+D+RDESDR G R+V
Sbjct: 290 AKCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIV 349

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRGA  +++LNQLY++TS+Q  FS+  +A++  +P+   L   + AF+  R +VV R
Sbjct: 350 IELKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQPKELPLNEAIWAFIEHRIDVVRR 409

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ----RSWNASDI 427
           RT +LLNKAR+R HVL+G  IA+ +LD+V+RIIR S +   AR  L      R  N    
Sbjct: 410 RTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGT 469

Query: 428 KDLIDLIDDSSYTI-------------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           +     +D + Y I              + GT+ LS  Q  AILEL+L RLT L  D++ 
Sbjct: 470 ELQGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDELL 529

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           NEL ++   I E   IL+S  +L  +I +EL  ++D+    RRT I++   ++  ED I 
Sbjct: 530 NELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDARRTTILDESTELTLEDLIA 589

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + VTVS+ GY+KR P+S YR QRRGG GR G+  R+EDFV  L I STH  +L F++
Sbjct: 590 DEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTHAYLLCFTN 649

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  KV+ +P      +GKA+ +++ L  GE++ TI+P  +        YV+FAT++
Sbjct: 650 SGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPVKDLAE--EGKYVLFATRN 707

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L DF  +   G IA+ +D  DE+++      E  I L T  G  +RF    +R
Sbjct: 708 GTVKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRFNEQDLR 767

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R + G RGI+L K D VI  A+    +A   +R+          ++ +   E   S
Sbjct: 768 PMG-RPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLELAAKTGLTAQVEAVLDEAGES 826

Query: 775 LKNDSSVEGNISE---------------ERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                       E               +  ++L L    IL+VS+ G+GKRT    +R+
Sbjct: 827 AAAQPLELAEPGELGAPVISEAAAAKLQQLDEKLGLTPCLILSVSDNGYGKRTDVDSYRL 886

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R GKG+     +   +IG + ++  V+D  +++++S  G +IR+    +R A RAT G
Sbjct: 887 QSRGGKGVINMKSTP--KIGKVASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRATMG 944

Query: 880 VVIFSTAKDERVVSVERIRESEIVDEAES 908
           V +     D++V +   I   +     E+
Sbjct: 945 VKLLDLDTDDKVAAAMVIPPEDPKSPTEN 973


>gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
 gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
          Length = 902

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/904 (40%), Positives = 551/904 (60%), Gaps = 33/904 (3%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   
Sbjct: 4   ANDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNN 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +S+R +L++GQGNFGSVDGD  A
Sbjct: 64  WNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K AH +L D+ ++TV+F  NYDGS +EP+VL  R+P +LVNG  GIAVGM
Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT+IP HNL + + GC+ ++++P+  +D L++I++ PDFPTGA I G TGI+  Y TGRG
Sbjct: 184 ATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIYGLTGIRAGYQTGRG 243

Query: 247 SIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +VIR  SHIE    +G+RE IVV EIPYQVNK+ ++EKI ELVREK +  IA+LRDESD
Sbjct: 244 RVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDESD 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIELKRG +A+V+LNQLY+ T LQ  FS+NMVAL   +P    L  IL  F+  
Sbjct: 304 KDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQPRLLNLKQILNEFLRH 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT + L KAR   H+  G A+A++N+DE++ +I+ S + + AR  LM R+W +
Sbjct: 364 RREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRAWQS 423

Query: 425 SDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           + + +++   D                      +LS+ Q RAIL + L  LTGL +D+I 
Sbjct: 424 ALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLDQDEIV 483

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCI 533
            E  SL   I + LDIL+   R+  II+ EL+ ++ +    RR+ I   G  D+ DED I
Sbjct: 484 KEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDERRSEINPFGGGDIADEDLI 543

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              +MVVT++H GY+K  P S Y+AQ+RGG+G+     +DEDF+  LF+ +TH  ++ F+
Sbjct: 544 PPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFT 603

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  +  KV+RLP G   +RG+ + N++ L+ GE+++ I+P  E      + YV FAT 
Sbjct: 604 NLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVRE---FPEDEYVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++ +LS F  ++  G  A+ L   D ++ V   +  +DI+L + LG+ +RF  +  
Sbjct: 661 MGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGKAIRF--NEY 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                    G  G    + +  +S ++    +   +       +   +            
Sbjct: 719 W-------AGGAG-DEDEAENDVSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGGLRGM 770

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L  +  +   ++ E   +L+     +LT ++ G+GKRT   D+    + G+GI A D  
Sbjct: 771 RLPENGRIVSLLTAEIGSDLQ-----VLTATQNGYGKRTPIADYTRKGKGGQGIIAIDTG 825

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G L+    V+  D ++L++  G LIR  V ++R   RA  GV + +  +   +VS
Sbjct: 826 ERN--GELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAAGVRLINLDEGTTLVS 883

Query: 894 VERI 897
           +ER+
Sbjct: 884 LERV 887


>gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 907

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/918 (42%), Positives = 544/918 (59%), Gaps = 104/918 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+ +NK+Y KCA +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL++
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ KDTVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT  +I GR GI+ AY  GRG+I +R  + +E
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 481 LMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600

Query: 617 ALINILSLNQGERITTIMPFP------------------------EDESSWNNLYVVFAT 652
            ++N++ L  GE++  I+P                          E  +     +V   T
Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G I + ++  DE+++         ILL+T  G  +RF  S 
Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R + GV+GI+L +GD+V+                                    
Sbjct: 721 VRPMG-RTAYGVKGITLEEGDEVV------------------------------------ 743

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        +         +   +LTV+  G+GKRT   ++R+  R GKG+     
Sbjct: 744 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV + +   K+E+V
Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850

Query: 892 VSVERIRESEIVDEAEST 909
           V V R+ E+    EAE  
Sbjct: 851 VGVARVAET--TPEAEEA 866



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 10/237 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V  V+  G +K+  L  +   R    G  G+ + + D +    +      +L  ++ G 
Sbjct: 655 FVFMVTRKGLIKKTRLEQFARPR--AAGIIGLGIEEGDELITARLTDGGGHILLSTARGM 712

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             + +   +      A G   +  ++L +G+ +      P          V+  T +G  
Sbjct: 713 AIRFEESDVRPMGRTAYG---VKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYG 769

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R +L+++    R GK  + + + +    +++        +++L T  G  +R P   I 
Sbjct: 770 KRTELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNAGMLIRMPARGIS 829

Query: 715 VFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           V   RN+ GVR I+L  K +QV+ +A V     + +E     +   A     +   E
Sbjct: 830 VIG-RNTQGVRLITLESKEEQVVGVARVAETTPEAEEAGVREEPEGAAPVETAPQDE 885


>gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 850

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/896 (40%), Positives = 550/896 (61%), Gaps = 86/896 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV  +K Y K 
Sbjct: 19  RITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKS 78

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R
Sbjct: 79  ARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 138

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 139 LSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+     ++DNPD     LME++ GPDFPTG V++G++GI+ AY TGRGSI++R   
Sbjct: 199 LSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYETGRGSIILRAKV 258

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  +  +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR+G RVVI++
Sbjct: 259 EIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDV 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R ASA+VILN LY+ T +Q+ FS NM+A+    P   +L  IL+ ++  + EV+ RRTK
Sbjct: 319 RRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLEHQVEVITRRTK 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ RAH+L GL IA+ ++DE+++IIR S   E A+ +L+                
Sbjct: 379 YELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT--------------- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q +AIL++RL RLTGL R+ I  E N L  +I++   ILSSR
Sbjct: 424 -----------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSR 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            R+  II +ELL ++ +    RRT + V  +L +EDED I  ED++V+++H GY+KR+P 
Sbjct: 473 DRVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPT 532

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF+  G VY+ K + +P     A
Sbjct: 533 TEFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSA 592

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N+L++N GE+I  ++    D  +     ++F T +G V+R  +SDF  I  +G 
Sbjct: 593 KGIPIVNLLNINSGEKIEAVINVS-DRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGL 651

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   D++++     Q  ++++ T LG  + F  S +R    R++ GVRGI L + D
Sbjct: 652 IAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSMG-RSATGVRGIRLREND 710

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+   ++                                                    
Sbjct: 711 YVVGADVLNP-------------------------------------------------- 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  +  +SEKGFGKRT + D+ I  R GKG++  ++++ N  G L  +  V+ N+ I
Sbjct: 721 ---DSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLSGLTTVSGNEDI 775

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +L++DKG +IR  + ++    R+T GV +    +D +V ++ ++ + E  DEA S 
Sbjct: 776 MLITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQE--DEASSD 829


>gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 811

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/891 (41%), Positives = 548/891 (61%), Gaps = 86/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K
Sbjct: 5   ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG+AAIYD + RMAQD+SLR  L++GQGNFGS+DGDP AA RYTE 
Sbjct: 65  SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK AH +L+DL K+TVDF PNYD + QEP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+ D   A+I+NP +  + L++ + GPDFPTG +I GR GI +AY+TGRG I IR  
Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGGIIYGRAGIHSAYSTGRGIIKIRAR 244

Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +EK +   +E +VVTE+PYQVNKA ++EKIA L+++K I  +A +RDESDR+G R+ +
Sbjct: 245 IMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIAM 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            LK+   A +I+N+LY++T L++ F + ++++   +PE   L   L+ F+A R+ VV+RR
Sbjct: 305 GLKKDEMASIIINKLYKHTQLENSFGIILLSIVNNRPELLNLKETLQYFIAHRKVVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L KA  RAH+L G  IA+ NLDEVV++IR S  P  AR  LM R            
Sbjct: 365 TKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMAR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+++Q +AIL++RL +LTGL  + +  E   L   I    +IL+
Sbjct: 413 --------------FDLTQIQAQAILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L I++ ELL V+ E    RRT IV+   ++  ED IV EDMVVT+SH GY+KR P
Sbjct: 459 SDQLVLEIVRDELLEVRTEYVDERRTEIVDDEGEITIEDMIVEEDMVVTISHRGYIKRNP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L++Y +QRRGGKG+ G+   DEDFV+ LF+ STH ++LFF++LG VY  KV+ +P     
Sbjct: 519 LTLYHSQRRGGKGKIGMGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRA 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+GK + N+L+L   E++ T++   E E  +N   ++ ATK G +++  L  +     +G
Sbjct: 579 AKGKFISNLLNLAPDEQLATVLDVKEFEPGYN---IIMATKDGIIKKTDLLAYSNPRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D++++        ++ L +  G+ +RF  S +R    R S GV+G++LA G
Sbjct: 636 IIALSLGEGDQLIAARISDGTQNVFLGSAFGKSIRFHESDVRAMG-RVSRGVKGMTLAAG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++ M ++ H                                                 
Sbjct: 695 DHLVGMEVLTHG------------------------------------------------ 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                + + + +E GFGKRTS  ++ +  R GKG+      + N  GA+V++  V+++D 
Sbjct: 707 -----KTLFSCTENGFGKRTSLDEYPLQKRGGKGVITIRTHERN--GAVVSILVVSNDDD 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++L++D G +IR+P+ +I + SR T GV +      E+++  +R+ E +  
Sbjct: 760 LMLMTDAGKIIRMPMGDISVISRNTMGVRLMGMEPGEKLIGAQRLAEKDEE 810


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 568/891 (63%), Gaps = 85/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I  ++I  EM+NSY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++G+  +K 
Sbjct: 3   EKRGNIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R +L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ KDTVD+RPN+D S +EP VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG V +IDN +  ++ LME I+GPDFPT A I+G  GIK AY TGRG I +
Sbjct: 183 PPHNLGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGTEGIKEAYTTGRGRIKV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ +  R+QI++TEIPYQVNKA ++EKIAELVR+K++  I+DLRDESDR+G R+
Sbjct: 243 RAKASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LN+LY++T L+  F V M+A+   +P+   L  +L  ++  +++++ 
Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGEPKVLNLKEVLTHYLDHQKDIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA +RAH+L GL IA+ NLDEV+++IR S N + A+  LM+           
Sbjct: 363 RRTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLME----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q +AIL++RL +LTGL  + +  E   L   I    +I
Sbjct: 412 ---------------TFTLSEKQAQAILDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++   +L IIK EL+ +K++    RRT I   + ++  ED I  E++V+T++H GY+KR
Sbjct: 457 LANERLMLNIIKDELIEIKEKYGDERRTEITRAIGEINIEDMITEEEVVITLTHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGGKG + +  R+EDFV +L   S+H  +LFF++ G VYK  V+ +P   
Sbjct: 517 LPADTYKSQKRGGKGIAALTTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEAR 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ L+  E +   +P       +++ Y+V ATK+G +++ +LS F    +
Sbjct: 577 RQAKGTAIVNLIPLSPNETVAATIPVG---RQFDSKYLVLATKNGIIKKTQLSQFESTRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ +   DE++ V+   ++++I+L T  G  +RF    +R    R+++GV+GI+L+
Sbjct: 634 SGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRDMG-RSAMGVKGINLS 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+SM                                                    
Sbjct: 693 PKDHVVSM---------------------------------------------------- 700

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+  + + +L +SEKGFGKRT + ++R+  R GKGI+  +V+   + G LV    V D 
Sbjct: 701 -EIVEENKDLLVISEKGFGKRTDTSEYRLQTRGGKGIKTYNVT--GKTGPLVGAKIVTDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+++L+++ GT+IR+ V+ I    R TKGV +    +D+ ++++  +  +E
Sbjct: 758 DEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQSIITIALMASTE 808


>gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
 gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
          Length = 909

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/898 (41%), Positives = 540/898 (60%), Gaps = 46/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G  G    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L   E IT I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L+ F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+                           +   S    +   + E   S  ND 
Sbjct: 720 TAKGVRGMR--------------------------VSFASNTIDVEDAEVENDDSDDNDD 753

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S + N+       +  +   +L     G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 754 SSDSNVVSRIVSLVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--G 811

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            L++   +++  +++L+SD GTL+R    E+    R  +GV +   +  E +V V  I
Sbjct: 812 ELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVVSI 869



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 105/283 (37%), Gaps = 26/283 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VKRV L+ +   R    G   + + +ED +  + 
Sbjct: 632 ETITAILPLTEFPENHYVFMATASGTVKRVELAQFSNIR--ANGLRAIELNEEDTLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMP 635
           I   +  ++ FS+ G   +     +      A+G          N + +   E       
Sbjct: 690 ITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSD 749

Query: 636 FPEDESS------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS- 680
             +D S                  V+ A  +G  +R  + DF    R GK  IA+K    
Sbjct: 750 DNDDSSDSNVVSRIVSLVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSER 809

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             E++S  +  +  +++L +  G  VR   + +    GRN+ GVR I L+  + ++   +
Sbjct: 810 NGELISAVSIDETKELMLISDGGTLVRTRAAEVAT-TGRNAQGVRLIRLSDAETLVG--V 866

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V     + DE +  ++       L + ++EE      D + E 
Sbjct: 867 VSIEAVEEDEELETIEQSVENTELDAVNSEEALVEPKDDTPEA 909


>gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
 gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
          Length = 910

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/898 (41%), Positives = 540/898 (60%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423

Query: 433 LI------------DDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D +   G  G    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L   E IT I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTE---FPENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  +  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R    R
Sbjct: 661 VELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-R 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+             V  A    D     +++  +     S D+  ++ +    
Sbjct: 720 TAKGVRGMR------------VSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRI---- 763

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                        +  +   +L     G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 764 ---------VSLVVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            L++   +++  +++L+SD GTL+R    E+    R  +GV +   +  E +V V  I
Sbjct: 813 ELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVVSI 870



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 108/290 (37%), Gaps = 39/290 (13%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VKRV L  +   R    G   + + +ED +  + 
Sbjct: 632 ETITAILPLTEFPENHYVFMATASGTVKRVELEQFSNVRS--NGLRAIELNEEDTLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------- 628
           I   +  ++ FS+ G   +     +      A+G          N + +   E       
Sbjct: 690 ITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSD 749

Query: 629 ------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674
                       RI +++  PE         V+ A  +G  +R  + DF    R GK  I
Sbjct: 750 DNDDSSDSNVVSRIVSLVVVPETGE------VLCACANGYGKRTPVDDFPTKKRGGKGVI 803

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           A+K      E++S  +  +  +++L +  G  VR   + +    GRN+ GVR I L+  +
Sbjct: 804 AIKTSERNGELISAVSIDETKELMLISDGGTLVRTRAAEVAT-TGRNAQGVRLIRLSDAE 862

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            ++   +V     + DE +  ++       L + ++EE      D + E 
Sbjct: 863 TLVG--VVSIEAVEEDEELETIEQSVENTELDAVNSEEALVEPKDDTPEA 910


>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
 gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
          Length = 844

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 540/899 (60%), Gaps = 85/899 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE      V I+ EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M  MG+  +K 
Sbjct: 3   EETARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A + GEVM  YHPHG+++IY+A+ RMAQD+++R +L+EGQGNFGSVDGDP AA RY
Sbjct: 63  FRKSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R  K A  LL D+ K+TVDF PNYDG  +EPVVL +R+PN+L+NG  GIAVGMATNI
Sbjct: 123 TESRFSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +A+IDNPDI +  LM+II+GPDFPT   ILG +GI+ AY TGRGSI++
Sbjct: 183 PPHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +I+VTEIPYQVNKA ++EKIAELVREK+I  I DLRDESDR+G R+
Sbjct: 243 RAKTQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R     V+LN L+++T +QS F VNM+AL   +P    L  +L  ++  +  ++ 
Sbjct: 303 VMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVIIR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A  RAH+L GL IA+ ++DE++ +IR S   E AR  LM+           
Sbjct: 363 RRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMEN---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS  Q +AIL++RL RLTGL R+ I NE   L ++I E   I
Sbjct: 413 ----------------YSLSYEQAQAILDMRLQRLTGLEREKIENEYQELMVKIAELRAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  +++  II+ EL  +K++    RRT I      +ED D I  ED+V+T++H GY+KR
Sbjct: 457 LADEAKIYAIIRDELGEIKEKFGDERRTEITFDENHIEDADLIPEEDVVITLTHDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S YR+Q+RGG+G  G+  +D+DFV  L+I ++H  ++FF+S G VY+ K + +P  S
Sbjct: 517 LPVSTYRSQKRGGRGVQGLGTKDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN++ + +GER++ ++P  E +      Y+ FATK G +++  L  +  I +
Sbjct: 577 RTAKGTPIINLIQIEKGERVSAVIPVKEFDQE---HYLFFATKKGIIKKTTLESYENIRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ L   DE++ V     +  I++ T  G  VRF    +R    RN+ GV+GI+L 
Sbjct: 634 GGLIAVNLREDDELIGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTMG-RNATGVKGITL- 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                                                              + +   +  
Sbjct: 692 --------------------------------------------------DDDDDVIDMD 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T +  G  KRT   ++RI +R GKGI+  +V+  +  G +V +  V   
Sbjct: 702 VIKPNAEVLIVTANGYG--KRTPVDEYRIQSRGGKGIKTHNVT--DRSGPVVGLKVVEPE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + +++++  G +IR  +  I +  R T+GV +   +++E+V SV +   +E  D  +  
Sbjct: 758 EDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVAKCPPTEEEDMTDED 816



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 94/262 (35%), Gaps = 18/262 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       +E  +   +  G +K+  L  Y   R+G  G   V +R++D +  + 
Sbjct: 594 ERVSAVIPVKEFDQEHYLFFATKKGIIKKTTLESYENIRKG--GLIAVNLREDDELIGVR 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +  G   +     +      A G          +G  +       + + 
Sbjct: 652 LTDGQQQIIMGTHKGMSVRFNEGDVRTMGRNATGV---------KGITLDDDDDVIDMDV 702

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
              N  V+  T +G  +R  + ++   +R GK     +  D    ++ ++    E D+++
Sbjct: 703 IKPNAEVLIVTANGYGKRTPVDEYRIQSRGGKGIKTHNVTDRSGPVVGLKVVEPEEDLMI 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R          GR + GV+ I L++ +QV S   V       +E +      
Sbjct: 763 ITTSGIIIR-TEMKGISVMGRYTQGVKLIRLSENEQVGS---VAKCPPTEEEDMTDEDAE 818

Query: 759 SAQRRLISGDTEEITSLKNDSS 780
                L  G+T E T     + 
Sbjct: 819 EGIEDLQDGETVEATEPIEPTE 840


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/844 (46%), Positives = 540/844 (63%), Gaps = 18/844 (2%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K +  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   EFAKEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL D+ K+TVDF  NYDGS +EP V   R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EVVD CVA+ID+P I +  LME + GPDFPT AVI G TGI  AY TGRG I +
Sbjct: 183 PPHNMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAAVINGATGIHEAYHTGRGRIYL 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E   G  R+ +VVTE+PYQVNKA +LEKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG   +VILN LY++T +Q++F +NMVAL   +P    L  +L+AF+  R EVV
Sbjct: 303 MVIELKRGEVPEVILNNLYQHTQMQNVFGINMVALVDGQPRLLDLKQVLEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S +P  A+  LM R+W +  + +
Sbjct: 363 TRRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDE 422

Query: 430 LIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++             D+++ I +DG  YLS+ Q +AIL+LRL RLTGL ++ + +E   L
Sbjct: 423 MLARAGAATSRPEDLDAAFGIHADG-YYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKEL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL S  RL+ +I+ ELL ++++    RRT I+E  LD+  ED I  ED+VV
Sbjct: 482 LEKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLTLEDLITEEDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  P+S YRAQ+RGG+G+S    +DEDFV  L + STH ++L FSS G  Y 
Sbjct: 542 TLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRGKAYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP GS  ARGK ++N+L L +GERI  I+P  E      +LYV  +T  G V++ 
Sbjct: 602 LKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVREY---LEDLYVFMSTSSGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF +   +G IA+ L   D+++ V       D++L T  G+ +RF    +R    R 
Sbjct: 659 PLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPMG-RT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ LA+  +VIS+ IV            Y K        + G   +         
Sbjct: 718 ACGVRGVRLAEDQRVISLIIVDEGTVLIATENGYGKRTPPDDFPVHGRGGQGVIAIQTGG 777

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G +       L   E  ++ +++ G   RT   D  +  R+ +G+R   ++    +  
Sbjct: 778 RNGAV---VGATLVADEDEVMLITDGGTLVRTPVADISVLGRNTQGVRLIRLTDQEHLVE 834

Query: 841 LVAV 844
           L  V
Sbjct: 835 LARV 838


>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 864

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/906 (41%), Positives = 542/906 (59%), Gaps = 52/906 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E  ++ I +  + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   SQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTP 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGS+D DPPAA
Sbjct: 64  DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAA 123

Query: 128 ERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL+      LL D+ ++TVDF  N+DGS QEP+V+ AR P +L+NG  GIAVGM
Sbjct: 124 MRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGE+++G +A+I NP+I  + LM+ I GPDFPTGA ILG TGI+ AY TGRG
Sbjct: 184 ATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGTTGIREAYTTGRG 243

Query: 247 SIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDE
Sbjct: 244 SITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDE 303

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIELKR A   V+LN LY+ T LQ  F  NM+AL   +P+  TL   L  F+
Sbjct: 304 SDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGEPQLLTLKEFLHEFL 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR +V+ RRT+Y   KA +R H+L GL IA++NLD V+ +IR + +  TA++EL+    
Sbjct: 364 KFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELID--- 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                  +  LSE Q  AIL+++L RLT L  + I+ E   L  
Sbjct: 421 -----------------------SYGLSEPQADAILQMQLRRLTALEAEKIQREHEDLVA 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL    R+L II+ E+  +K    +PRRT I +   +++  D I  +  V+ V
Sbjct: 458 QIADFQDILDRPERILSIIQTEVEQLKTRFASPRRTVIEQLEGEIDTTDLIANQKAVILV 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+P+  + AQ R G+GR G  ++++D V   F    H  +LFFS  G  Y  K
Sbjct: 518 TEQGYIKRMPVDTFEAQSRDGRGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLK 577

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +++PIGS  ARG  ++ +L + + E+IT+++P  E      + Y+V  T  G +++  L
Sbjct: 578 AYQIPIGSRNARGVPIVQLLPIPREEKITSVVPVDEFRE---DEYLVMLTAGGYIKKTAL 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNS 721
           S F  I  +G IA+ L++ D++  V    + + I++ ++ G  + F     ++   GR +
Sbjct: 635 SAFSNIRANGLIAIALETGDQLRWVRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLGRAT 694

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVR ++L  GD++I M I+  A             + ++        EEI    ++   
Sbjct: 695 RGVRAMALRAGDELIGMDILPSAIVANLAVATSDAEVESEEGAEEMPLEEIPINADNP-- 752

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                            ++L V+  GFGKR     FR+ NR+GKGI AT          L
Sbjct: 753 ---------------GPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITATKFKTRQTQDQL 797

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            A+  VN  D++++V+++G +IR  V  I   SRA  GV +    +++ + +V  +  +E
Sbjct: 798 AALRIVNGEDELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRLDEEDSIAAVTIVPSTE 857

Query: 902 IVDEAE 907
           + D  E
Sbjct: 858 LTDSEE 863


>gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
 gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
          Length = 861

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/917 (43%), Positives = 583/917 (63%), Gaps = 72/917 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++  +S    E     V+I  EM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSKYTENS-TNFESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  DVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL KDTVDF  NYDGS  EP VL AR PN+L NG  
Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++ C+  I+N DI +D L+EI+ GPDFPT  +I G +GI+ A
Sbjct: 180 GIAVGMATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGIINGTSGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R VSHIE    ++  I+VTE+PYQVNKA ++ KIAELV++KRI  I  LR
Sbjct: 240 YETGKGKIYLRCVSHIE--GEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G  +VIEL+RG   +VILN LY+ T +Q++F +NMVA++   P+  TL  IL+A
Sbjct: 298 DESDKDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKGIPKLMTLKDILEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R +VV RR+ + LNKAR+R H+L GL++A+ N+D +V +I+ +P+   AR  L+ +
Sbjct: 358 FIAHRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAK 417

Query: 421 SWNASDIKDLIDLIDDSSY---------TIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +W +S I +L+   D + +          +   G   LS+ Q +AIL+L+L RLTG  +D
Sbjct: 418 TWRSSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKD 477

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E N L   IK  LDIL +  RL+ +I +EL+ ++      R T+I+E  +D+  ED
Sbjct: 478 KIFDEFNELLERIKYLLDILQTPERLMQVICEELIDIQSNYGNARMTQILEHNIDLTLED 537

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E+ VVT+SH GYVK   LS Y+AQ RGGKG+S   ++DEDFV  LFI ++H  VL 
Sbjct: 538 LIAQEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIANSHDIVLC 597

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G VY  KV+ LP+ S  +RGK +IN+L L + E I  I+P  + +    N +V  A
Sbjct: 598 FSSFGKVYWLKVYDLPMASRISRGKPIINLLPLEKKEIINAILPILKFDE---NHFVFMA 654

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G  ++  L++F +  + G IA++L + D+++ VE  + E+DI+L +  G+ +RF  S
Sbjct: 655 TSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKSIRFKES 714

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R+   R ++GVRGI L  GD+V+S+ +                               
Sbjct: 715 DVRIVG-RTAIGVRGIKLVDGDKVVSLIV------------------------------- 742

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++  +LT +EKGFGKRT   ++R+ +R G G+ +  
Sbjct: 743 ----------------------TNQDSPVLTATEKGFGKRTHLNEYRVQSRGGSGVISIK 780

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S  N  G ++    V + D+++L+S+KG L+R    ++ I  R T+GV++ + +KDE++
Sbjct: 781 TSDRN--GKIIGAIQVTNEDEMMLISNKGILVRARAADVSIIGRNTQGVILINISKDEKL 838

Query: 892 VSVERIRESEIVDEAES 908
           VS+ ++ E+E  D++ES
Sbjct: 839 VSIAKVVETE-DDKSES 854



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 10/154 (6%)

Query: 506 LSVKDELDTPR---RTRIVEGLLDMEDEDCIV------REDMVVTVSHLGYVKRVPLSVY 556
            S++ +    R   RT I    + + D D +V      ++  V+T +  G+ KR  L+ Y
Sbjct: 707 KSIRFKESDVRIVGRTAIGVRGIKLVDGDKVVSLIVTNQDSPVLTATEKGFGKRTHLNEY 766

Query: 557 RAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           R Q RGG G   +   D    +     V+    ++  S+ G + + +   + I     +G
Sbjct: 767 RVQSRGGSGVISIKTSDRNGKIIGAIQVTNEDEMMLISNKGILVRARAADVSIIGRNTQG 826

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             LINI    +   I  ++   +D+S   +   V
Sbjct: 827 VILINISKDEKLVSIAKVVETEDDKSESKSKNYV 860


>gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
 gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
          Length = 807

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/883 (43%), Positives = 543/883 (61%), Gaps = 85/883 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M  +   +N+ + K AR+ 
Sbjct: 10  VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + 
Sbjct: 70  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L DL K+TVDF P YDG+  EP+VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
             G   V+DNP+I L  LM +I GPDFPT   ILG+ GI +AY+TGRG I IR  + +EK
Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFILGKQGIIDAYSTGRGIIKIRSRAFVEK 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + ++E+I+V+EIPYQVNK  +LEKIA  VREK+I  I+++RDESDR G R+VIE+KR A
Sbjct: 250 FAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A VILNQLY++T ++  F + ++A+   +PE  TL G++  F+  R E++VRRT + L 
Sbjct: 310 YALVILNQLYKFTQMEVSFGIILLAIVNGRPEILTLKGMIDHFIKHRREIIVRRTIFDLK 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL  A+  LDEV+ +IR S + + A+  LM                    
Sbjct: 370 KAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAE------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE+Q +AIL++RL RLTGL R+ I  E  +L  +I     IL++ S +L
Sbjct: 412 --------FQFSEIQAQAILDMRLQRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVL 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK+ELL +++     RR+ I++   +++ ED I  EDMVVTVSH GY+KR P+S+YRA
Sbjct: 464 DIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEEDMVVTVSHQGYIKRNPISLYRA 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG +G   ++EDFV  LF+ S+H   LFF++ G VY +KV  +P G   +RGKA+
Sbjct: 524 QRRGGKGLTGAKPKEEDFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAI 583

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L L +GER+ TI+P  + E      YVV ATK G V++ +L  +      G I +K+
Sbjct: 584 VNLLDLKKGERLATILPVRDYEE---GKYVVMATKMGFVKKTELKAYSHPRSVGTIGLKI 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+++V   + + DI LTTK G+ +RF  S +R    R + G  GI +  G++V+ M
Sbjct: 641 RENDELIAVRVSSGDQDIFLTTKEGKSIRFKESELRSMG-RVAAGNIGIKMETGNEVVGM 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                                                                E   +  
Sbjct: 700 -----------------------------------------------------ETLGEGA 706

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILTV+E GFGKRT+  ++    R+GKG+     S+ N  G +V  + V D D++++++ 
Sbjct: 707 TILTVTENGFGKRTNREEYPTQARAGKGVITIKTSERN--GLVVYAYEVTDQDELMIITG 764

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            G +IR+   +I +  R T+GV +    + E+VV V +I E +
Sbjct: 765 HGKIIRIRAADISVIGRNTQGVKLIDLGEGEKVVGVAKIMEDD 807



 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS---EERCQELKLKEQFILTV 803
           D       +   S    +I  +  EI +   D      I    E   ++L  +E  ++TV
Sbjct: 448 DIAHYKAILATPSMVLDIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEEDMVVTV 507

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S +G+ KR     +R   R GKG+      + + +  L   F  + +D  +  ++KG + 
Sbjct: 508 SHQGYIKRNPISLYRAQRRGGKGLTGAKPKEEDFVEHL---FVASSHDYFLFFTNKGRVY 564

Query: 864 RVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
              V+EI    R ++G   V +    K ER+ ++  +R+ E 
Sbjct: 565 WKKVHEIPEGGRMSRGKAIVNLLDLKKGERLATILPVRDYEE 606


>gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
 gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
          Length = 850

 Score =  786 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/896 (40%), Positives = 549/896 (61%), Gaps = 86/896 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV  +K Y K 
Sbjct: 19  RITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKS 78

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L+ G GNFGSVDGD  AA RYTE R
Sbjct: 79  ARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGDGAAAMRYTEAR 138

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 139 LSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+     ++DNPD     LME++ GPDFPTG V++G++GI+ AY TGRGSI++R   
Sbjct: 199 LSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYETGRGSIILRAKV 258

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  +  +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR+G RVVI++
Sbjct: 259 EIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDV 318

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R ASA+VILN LY+ T +Q+ FS NM+A+    P   +L  IL+ ++  + EV+ RRTK
Sbjct: 319 RRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLEHQVEVITRRTK 378

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ RAH+L GL IA+ ++DE+++IIR S   E A+ +L+                
Sbjct: 379 YELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT--------------- 423

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q +AIL++RL RLTGL R+ I  E N L  +I++   ILSSR
Sbjct: 424 -----------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSR 472

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            R+  II +ELL ++ +    RRT + V  +L +EDED I  ED++V+++H GY+KR+P 
Sbjct: 473 DRVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPT 532

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF+  G VY+ K + +P     A
Sbjct: 533 TEFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSA 592

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  ++N+L++N GE+I  ++    D  +     ++F T +G V+R  +SDF  I  +G 
Sbjct: 593 KGIPIVNLLNINSGEKIEAVINVS-DRKNDVQKDLLFVTLYGTVKRTPVSDFANIRSNGL 651

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   D++++     Q  ++++ T LG  + F  S +R    R++ GVRGI L + D
Sbjct: 652 IAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSMG-RSATGVRGIRLREND 710

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+   ++                                                    
Sbjct: 711 YVVGADVLNP-------------------------------------------------- 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  +  +SEKGFGKRT + D+ I  R GKG++  ++++ N  G L  +  V+ N+ I
Sbjct: 721 ---DSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLSGLTTVSGNEDI 775

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +L++DKG +IR  + ++    R+T GV +    +D +V ++ ++ + E  DEA S 
Sbjct: 776 MLITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQE--DEASSD 829


>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
 gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
          Length = 833

 Score =  786 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/904 (41%), Positives = 551/904 (60%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NP++    LM+II GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+TS  +++IV+ EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKSDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+  V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+          
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMEN--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I +E   L   I E   
Sbjct: 414 -----------------YSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ +K+  +  RRT IV  G+  +EDED I  E++V+T++H GY+
Sbjct: 457 ILADNEKVLEIIREELIEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +    N Y+ F T+HG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDE---NSYLFFTTRHGVSKRTTLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E  I++ TK G  +RF  + +R    R + GV+GI+
Sbjct: 634 RNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREMG-RTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++ D V+ M I+                                               
Sbjct: 693 LSEDDIVVGMEILEP--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+E+G+GK T   ++R+  R GKG++   ++  N     V      
Sbjct: 708 --------DANVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNNGPLVTVKATNAE 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE--A 906
             + +++++  G +IR+ V++I    R T+GV +     +E V +V  + +S+  DE   
Sbjct: 760 AEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQSQEDDEDNE 819

Query: 907 ESTE 910
           E+ E
Sbjct: 820 ENVE 823



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 98/247 (39%), Gaps = 17/247 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G  KR  LS +   R    G   + +RDED +  + 
Sbjct: 596 EWINAIIPVSEFDENSYLFFTTRHGVSKRTTLSQFANIR--NNGLIALSLRDEDELMAVR 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +    ++  +  G + +     +      A G   +  ++L++ + +  +      E 
Sbjct: 654 LTNGEKQIIIGTKKGMLIRFAETDVREMGRTAAG---VKGITLSEDDIVVGM------EI 704

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQE--NDI 696
              +  V+  T+ G  +     ++    R GK        D+   +++V+    E   D+
Sbjct: 705 LEPDANVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNNGPLVTVKATNAEAEEDL 764

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           ++ T  G  +R  +S I    GR + GVR I L   + V ++A+V  +  D ++    ++
Sbjct: 765 MIITGSGVIIRMAVSDIST-TGRVTQGVRLIRLGDEEHVATVALVEQSQEDDEDNEENVE 823

Query: 757 HMSAQRR 763
           ++ + + 
Sbjct: 824 NIESDQE 830


>gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 861

 Score =  786 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/907 (44%), Positives = 574/907 (63%), Gaps = 69/907 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+EH  +     +  +  V+I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSEHTENP-THFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF  NYDGS  EP+VL  R PN+L NG  
Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV++ C+  IDN DI +D L+EI+ GPDFPT  +I G +GI+ A
Sbjct: 180 GIAVGMATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGIINGASGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R V HIE    D++ IVVTE+PYQVNKA ++ KIA+LV++KRI  I  LR
Sbjct: 240 YETGKGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+VIEL+RG   +V+LN LY+ T +Q++F +NMVA++   P+  TL  IL+A
Sbjct: 300 DESDKDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKGMPKLMTLKNILEA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R +VV RR+ + LNKAR+ AH+L GLA+A+ N+D+++ +I+ + N   A+  L+ +
Sbjct: 360 FIAHRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAK 419

Query: 421 SWNASDIKDLIDLIDDSSY---------TIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +W  S IK+LI   D   +          +  DG   LS+ Q +AIL+L+L RLTGL ++
Sbjct: 420 TWQGSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKN 479

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E N L   IK  LDIL +  RL+ +I++EL+ ++      R T+I+E  +D+  ED
Sbjct: 480 KIFDEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANARMTQILEHKIDLTLED 539

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E  VVT+SH GYVK   LS Y+AQRRGGKG+    ++DEDFV  LFI ++H +VL 
Sbjct: 540 LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVLC 599

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSSLG VY  KV+ LP+ S  ARGK ++N+L L + E I  I+   + +    N +V   
Sbjct: 600 FSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDE---NHFVFMV 656

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G  ++  L++F +  + G IA++L   D+++ VE  + E+DI+L +  G+ +RF  S
Sbjct: 657 TSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFKES 716

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +RV   R ++GVRGI LA  D+V+S+ +V   +                          
Sbjct: 717 DVRVVG-RTAIGVRGIKLANADKVVSLIVVNQDNP------------------------- 750

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ILT +EKGFGKRT   ++R   R G G+ +  
Sbjct: 751 ----------------------------ILTTTEKGFGKRTRLNEYRSQARGGLGVISIK 782

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S  N  G +V    + D D+++L+S+KGTL+R    ++ I  R T+GV + +  K E++
Sbjct: 783 TSDRN--GKVVGAIQITDEDEMMLISNKGTLVRARAVDVSIIGRNTQGVTLINIIKGEKL 840

Query: 892 VSVERIR 898
           VS+ +I 
Sbjct: 841 VSIAKIA 847



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  +E+ ++T+S  G+ K  S  D++   R GKG  AT V   + +  L   F  N +
Sbjct: 538 EDLITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQL---FIANSH 594

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
           D ++  S  G +  + V E+ +ASR  +G   V +    K+E + ++  + + + 
Sbjct: 595 DTVLCFSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDE 649


>gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21]
 gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21]
          Length = 862

 Score =  786 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/908 (40%), Positives = 553/908 (60%), Gaps = 86/908 (9%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +   + D        I  +SI +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+
Sbjct: 1   MADETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM+ +GV   K Y K ARI G+V+GKYHPHG++++YD + RMAQ+WSLR  L++GQGNFG
Sbjct: 61  GMLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE RL++ A  +L D+ KDT+D++ N+D S QEP VL  + PN+LVNG
Sbjct: 121 SIDGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATN+  HNL EV+DG VA IDN DI +  LM+ I+ PDFPTG VI G  G++
Sbjct: 181 ASGIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIYGYAGVQ 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +A+ TGRG +V+R  + IE +  D+E I+VTEIPYQVNKA M+++ A+LV EK+I  I+ 
Sbjct: 241 DAFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISA 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESDR G R+V ++KR A+A ++LN L++YT+LQ+ FSVN +AL   +P    L  ++
Sbjct: 301 IRDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALVHGRPMLLNLKDMI 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EV++RRTK+ L +A  RAH+L GL IA+ +LDEV+++IR S  PE AR  LM
Sbjct: 361 HHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           ++                            LS++Q RAIL++ L RLTGL RD I+ E  
Sbjct: 421 EK--------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYA 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I+    +L+     + IIK ELL VK++    RR++IV    DM  ED I  E++
Sbjct: 455 ELMKTIEYLKSVLADEGLRMKIIKDELLEVKEKFGDERRSQIVHSAEDMRMEDFIDDEEI 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T+SH GYVKR PL+ YR Q RGGKG  G   ++EDF   +   S H  +LFF+  G  
Sbjct: 515 VITISHEGYVKRTPLTEYRLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRC 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGN 656
           +  + + +P G+  +RG+A+ NI+++ + E+I   +      D+    N +++  TK G 
Sbjct: 575 FWLRAFEIPEGTRTSRGRAIQNIINIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGT 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++  L  + +   +G  A+ ++  D++L        ++I++  K G+ +RF  S +R  
Sbjct: 635 IKKTSLEAYSRPRANGINAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPM 694

Query: 717 AGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             R + GVRG++LA   D+V+ M  V   DA                             
Sbjct: 695 G-RTATGVRGVTLAGPDDEVVGMISVNTNDAT---------------------------- 725

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   IL VSEKG+GKRT   D+R++NR GKG++  +V++ 
Sbjct: 726 ------------------------ILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTE- 760

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G LVA+  V DND +++++  G +IR+ V+++R+  RAT+GV + +  +++++ S+ 
Sbjct: 761 -KTGLLVAIKDVTDNDDLMIINRSGIVIRIAVSQLRVMGRATQGVRLINLKENDQIASIT 819

Query: 896 RIRESEIV 903
           ++   E+ 
Sbjct: 820 KVDHDEVE 827



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 101/255 (39%), Gaps = 13/255 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +  + ++  +  G +K+  L  Y   R    G + + + + D + +  + + ++ ++
Sbjct: 618 QDYLENNFIIMCTKGGTIKKTSLEAYSRPR--ANGINAININEGDQLLEACLTNGNSEIV 675

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +     +      A G  +  +      + +  ++         N+  ++ 
Sbjct: 676 MALKSGRAIRFNESTVRPMGRTATG--VRGVTLAGPDDEVVGMISVN-----TNDATILV 728

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R  + D+   NR GK    L+  ++   +++++  T  +D+++  + G  +R
Sbjct: 729 VSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTEKTGLLVAIKDVTDNDDLMIINRSGIVIR 788

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S +RV   R + GVR I+L + DQ+ S+  V H + +  +         A       
Sbjct: 789 IAVSQLRVMG-RATQGVRLINLKENDQIASITKVDHDEVEGLDVTETSVGNDASTENEGE 847

Query: 768 DTEEITSLKNDSSVE 782
                +    D + E
Sbjct: 848 VDNSTSDKGQDETNE 862


>gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152]
 gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152]
          Length = 836

 Score =  786 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 518/916 (56%), Gaps = 92/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   E     +  V I  EMQNSY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MTDITLPP-ESAGDRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG YHPHG++AIYD L RMAQ W++R  L++GQGNFGS 
Sbjct: 60  YDNGYRPDRGYVKSARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEPVVL +R PN+L+NG  
Sbjct: 120 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSN 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     +DN D D +    A ME I+GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGTQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ +  R  IV+TE+PYQVN    +  IAE V++ +I  I
Sbjct: 240 IHDAYTTGRGSIKMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 300 ADIHDESSDRVGLRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V++RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S N +TAR 
Sbjct: 360 QMIRLYVNHQLDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL+++L RL+ L R  I +
Sbjct: 420 GLME--------------------------LLDIDEIQATAILDMQLRRLSALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL    R   I++ EL  + ++    RRT+IV    D+ DED I R
Sbjct: 454 DLARIEAEIADYKDILDKPERQRAIVRDELAEIVEKYGDERRTQIVSADGDVADEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I  I+     E   +  Y+V ATK+G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIAQIIQIKTYE---DAPYLVLATKNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++LSDF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSRLSDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNAEDELLSLNVVRPG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++    R GKG+       
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFDA 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+D++  ++  G +IR   N++R A R TKGV + +  + + ++++
Sbjct: 758 R--RGTLVGALIVDDDDELYAITSGGGVIRTAANQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIR-ESEIVDEAEST 909
            R   E + VD  + T
Sbjct: 816 ARNADEPDAVDGGDDT 831


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/907 (43%), Positives = 565/907 (62%), Gaps = 88/907 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES     Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDETISTMIAVKDLES--EEHYLVFATKRGIVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RFP SA+R    R + GV+GI
Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+ + +      D                                        
Sbjct: 694 TLREGDVVVGLDVAHAESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV---- 903
              + +++V++ G +IR+ V +I    RA +GV +    + + V +V +++E E      
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADS 820

Query: 904 DEAESTE 910
           D+ +++E
Sbjct: 821 DDTDASE 827


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/903 (43%), Positives = 564/903 (62%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G RE+IVVTEIP+QVNKA M+EKIA+LVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   ++DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     +  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNKD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 714 -----------EILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
             ++ +++V+++G +IR+ V+ I +  R  +GV +     ++ V +V ++ +E E ++  
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESD 820

Query: 907 EST 909
           E T
Sbjct: 821 EDT 823


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/898 (43%), Positives = 559/898 (62%), Gaps = 84/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +      D                                        
Sbjct: 694 SLREGDTVVGLDVADSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              + +++V++ G +IR+ V++I    RA +GV +      + V +V +++E +  +E
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEE 818


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 549/911 (60%), Gaps = 95/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E + SS         SV I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRRILF M
Sbjct: 1   MDETLNSS--------VSVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G  ++K + K AR+ G+V+GKYHPHG++A+YDAL RMAQ WS+R +L++GQGNFGSV
Sbjct: 53  QDLGSTFDKPFKKSARVVGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSV 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ + A  LL D+ KDTVDF PNYD S +EP VL ARYPN+L+NG  
Sbjct: 113 DGDSPAAMRYTEARMSRLAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQ 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E ++  +A+++NP+ID D LM+I+ GPDFPTG  I GR+GI++A
Sbjct: 173 GIAVGMATNIPPHNLAETINATIALVNNPEIDDDELMQIMPGPDFPTGGFIYGRSGIRSA 232

Query: 241 YATGRGSIVIRGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           + TGRGS+ +R  + +E      R+ +++TE+PYQVNKA ++E IA  VR+K++  I DL
Sbjct: 233 FMTGRGSVTMRARAIVEVNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDL 292

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+ IELK+    +V+LN LY++T LQ  F  N++AL   +P+   +  +L 
Sbjct: 293 RDESDRDGMRIAIELKKNEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQPKLCGVRELLL 352

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R +VV RR  + L KA  RAH+L GL IA+  +DEV+++IR S     A+  LM+
Sbjct: 353 HFLDHRRQVVTRRCLFDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLME 412

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LS++Q +AIL++RL RLTGL RD I+ E   
Sbjct: 413 H--------------------------FGLSDLQAQAILDMRLQRLTGLERDKIKAEYEE 446

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I     IL+    L+ +I +E+ +V+D    PRR+ I++   ++  ED I  EDMV
Sbjct: 447 IQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADPRRSEIMDETAELSVEDLITEEDMV 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S+ GY+KR   S+YRAQRRGG+G++ +  +DEDFV  L + STH  +LFFS  G V+
Sbjct: 507 VTISNEGYIKRNATSLYRAQRRGGQGKTAMTTKDEDFVAQLMVASTHDYLLFFSDQGRVF 566

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           ++KV+ +P     ARGKAL+N+L + + ERI+  +   E +    N +++ ATK+G V++
Sbjct: 567 RKKVYEVPQAGSTARGKALVNLLPVEKDERISATLAIREFDE---NRFIIMATKNGVVKK 623

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +LS++  I  +G IA+KLD  D ++SV     + D++L T  G+ +RF  S +R    R
Sbjct: 624 TRLSEYQNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATSGGKAIRFAESDVRPMG-R 682

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GV G+ L     VISM                                         
Sbjct: 683 STRGVTGMRLPGDCNVISMT---------------------------------------- 702

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                        L   E  +L VSE GFGKRTS  ++ +  R G+G+        N  G
Sbjct: 703 -------------LVSDEATLLAVSENGFGKRTSVSEYNVQKRGGQGVFTLKTGGRN--G 747

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V+D+DQ+++++D G L+R+ +N + +  R T+GV + +  + ERV+   R+ E
Sbjct: 748 DMVAALLVHDDDQVMMMTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAE 807

Query: 900 SEIVDEAESTE 910
               DE  + E
Sbjct: 808 Q-ADDELATDE 817



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 99/257 (38%), Gaps = 15/257 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               ++  +  G VK+  LS Y  Q     G   + + D+D +  + + +    V+  +S
Sbjct: 608 ENRFIIMATKNGVVKKTRLSEY--QNIRANGIIAIKLDDDDGLISVLVSNGDEDVMLATS 665

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +       RG   +  + L     + ++    ++        ++  +++
Sbjct: 666 GGKAIRFAESDVRPMGRSTRG---VTGMRLPGDCNVISMTLVSDE------ATLLAVSEN 716

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  +S++    R G+    L +      +++      ++ +++ T  G+ VR  ++
Sbjct: 717 GFGKRTSVSEYNVQKRGGQGVFTLKTGGRNGDMVAALLVHDDDQVMMMTDSGRLVRIRLN 776

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            + V   RN+ GV+ I+  +G++VI    V     D       ++  + +         E
Sbjct: 777 GVSVIG-RNTQGVKLIACKEGERVIGAVRVAEQADDELATDELIEGTADEATANDAAAGE 835

Query: 772 ITSLKNDSSVEGNISEE 788
                 +S V  +  ++
Sbjct: 836 QQEAAGESDVSNDEGDD 852


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKEADVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQDK--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 106/266 (39%), Gaps = 13/266 (4%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +    
Sbjct: 603 IAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGK--IAIKFRDDDELIAVRLTDGE 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  ++   + + K   +   S  A G   +  + L  G+ +  +    +D       
Sbjct: 661 KHILIGTAQASLIRFKEADVRAMSRIAAG---VKGIRLRDGDEVIGLDVADDDNQDK--- 714

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            ++  T+ G  +R  + D+   NR G   K A   +    ++ + T   + D+++ T  G
Sbjct: 715 -ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  +S I V   R + GVR I L +   V ++A V     D +         ++   
Sbjct: 774 VIIRMEVSNISVNG-RMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDV 832

Query: 764 LISGDTEEITSLKNDSSVEGNISEER 789
            +  D        +  + E  +S ER
Sbjct: 833 EVVVDDVTPGDTIHTEAPEPEVSPER 858


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/898 (43%), Positives = 558/898 (62%), Gaps = 84/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +      D                                        
Sbjct: 694 SLREGDTVVGLDVADSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEE 818


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/907 (43%), Positives = 565/907 (62%), Gaps = 88/907 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 64  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 184 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 244 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 304 RIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 364 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 416 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 458 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 518 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES     Y+VFATK G V+R+ LS+F +
Sbjct: 578 ELSRQSKGIPVVNAIELENDETISTMIAVKDLES--EEHYLVFATKRGIVKRSALSNFSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RFP SA+R    R + GV+GI
Sbjct: 636 INKNGKIAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPLG-RTAAGVKGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+ + +      D                                        
Sbjct: 695 TLREGDVVVGLDVAHAESED---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 -----------EVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE----IV 903
              + +++V++ G +IR+ V +I    RA +GV +    + + V +V +++E E      
Sbjct: 762 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADA 821

Query: 904 DEAESTE 910
           D+ +++E
Sbjct: 822 DDTDASE 828


>gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S]
 gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
 gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi]
 gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S]
 gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
          Length = 839

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/909 (38%), Positives = 514/909 (56%), Gaps = 90/909 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +E     I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ ++  DTVDF PNYDG  QEP VL +R PN+LVNG G
Sbjct: 121 GNDGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     +DN     +  L+A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +RGV  IE++     QIV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ +KR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 301 SKIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV++RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVART 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLMD--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I+K EL  + ++    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRQIVKDELSEIVEKYGDDRRTRIIAADGDVTDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ ED V + F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTRTDLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I +I+     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIQSIIHIKSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSRLADFDSNRSGGIVAINLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+   + D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNQDDELLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   D+    R GKG+       
Sbjct: 722 -----------------------TYLLVATSGGYAKRTPIEDYVAQGRGGKGVLTIQYDP 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V+D+D++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 --KRGTLVGAVIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRESEIV 903
            R  +    
Sbjct: 817 ARNADEPEE 825


>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 815

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/883 (42%), Positives = 543/883 (61%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   K Y 
Sbjct: 7   EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 247 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L  +++ +E V+ RR
Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 414 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 461 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P     
Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E +    + ++   T+ G V++  L++F  I +SG
Sbjct: 581 AKGTAIVNLLAVEADERITAVIQVREFK---PDRFLFLGTRKGVVKKTPLAEFANIRKSG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+LG+ + FP   +R    R + GVRGI+L+ G
Sbjct: 638 LRAVNLDEDDELIGVKFTDGENRIMLGTRLGKAITFPEDGVRSMG-RIARGVRGITLSDG 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I+                                                   
Sbjct: 697 DEVVAMDILKSG------------------------------------------------ 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V  + +
Sbjct: 709 -----SEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRGSQE 761

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++L++ +G +IR  V+EI + SR T+GV + + A+++RV S+ 
Sbjct: 762 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 804



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 120/314 (38%), Gaps = 21/314 (6%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-----IMPFPEDESSWNNLYV 648
            +      + ++L     QA     +  L+  + E+I       +    E +S   +   
Sbjct: 405 DIARTALMEGFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNK 464

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V A     + +N+L +        +         E+   +   +E+ ++  T      R 
Sbjct: 465 VLA-----IIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRI 519

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRL 764
           P+   R    R  VGV+G+   + D V  + I              R   +K        
Sbjct: 520 PLDTYR-RQRRGGVGVKGMGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESG 578

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +     I +L    + E   +  + +E K  ++F+   + KG  K+T   +F    +SG
Sbjct: 579 RAAKGTAIVNLLAVEADERITAVIQVREFK-PDRFLFLGTRKGVVKKTPLAEFANIRKSG 637

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +RA ++ + +E   L+ V   +  ++I+L +  G  I  P + +R   R  +GV   +
Sbjct: 638 --LRAVNLDEDDE---LIGVKFTDGENRIMLGTRLGKAITFPEDGVRSMGRIARGVRGIT 692

Query: 885 TAKDERVVSVERIR 898
            +  + VV+++ ++
Sbjct: 693 LSDGDEVVAMDILK 706



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           AD ++ +  +K+   + R   GD        +        SE   ++L  +E  ++T++ 
Sbjct: 460 ADRNKVLAIIKNELIEVRDKYGDERRTEITFD-------ASEMDIKDLIAEEDVVVTLTM 512

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             + KR     +R   R G G++     + + +  L+       + +I+  +++G    +
Sbjct: 513 SNYIKRIPLDTYRRQRRGGVGVKGMGTKETDVVSDLLITTT---HHEILFFTNRGRAFVL 569

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
              EI  + RA KG   V + +   DER+ +V ++RE
Sbjct: 570 KAYEIPESGRAAKGTAIVNLLAVEADERITAVIQVRE 606


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  784 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/898 (43%), Positives = 557/898 (62%), Gaps = 84/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +      D                                        
Sbjct: 694 SLREGDTVVGLDVADSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEE 818


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  784 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/898 (43%), Positives = 558/898 (62%), Gaps = 84/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +      D                                        
Sbjct: 694 SLREGDTVVGLDVADSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEE 818


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  784 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/873 (41%), Positives = 542/873 (62%), Gaps = 28/873 (3%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            I+   ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++
Sbjct: 127 PIVRPMDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEL 186

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
             +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD
Sbjct: 187 NNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGD 246

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR PN+L+NG  GIA
Sbjct: 247 NAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIA 306

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y T
Sbjct: 307 VGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRT 366

Query: 244 GRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           GRG +V+R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDE
Sbjct: 367 GRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDE 426

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+
Sbjct: 427 SDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFL 486

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW
Sbjct: 487 LHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSW 546

Query: 423 NASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTG 467
           ++  ++D++   +  +               + +  DG   LS+ Q + IL++RL RLTG
Sbjct: 547 DSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTG 606

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     ++
Sbjct: 607 LEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATEL 666

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH 
Sbjct: 667 DTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHD 726

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +
Sbjct: 727 YILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HF 783

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VR
Sbjct: 784 VFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVR 843

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R    R + GVRG++L +G QVI+M +     A   E+      ++A       
Sbjct: 844 FDENDVRPMG-RQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGK 902

Query: 768 DTEEITSLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            T      ++    +G I+ +  +         L   E  I+ ++  G   RT   + R 
Sbjct: 903 RTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIRE 962

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             R+ +G+    V + N++  L  V   +   +
Sbjct: 963 MGRATQGVTLIAVGEGNKLSGLQRVVESDAEGE 995


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  784 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/886 (42%), Positives = 543/886 (61%), Gaps = 85/886 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y 
Sbjct: 5   QGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF PNYD S +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 125 VRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG + +ID+PD  +D LM++I+GPDFPT  +ILG+ GI+ AY TGRG I +R 
Sbjct: 185 HNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE  S  + +I+VTE+PYQVNKA ++EKIA+LVR+K+I  I  L DESDR G R+VI
Sbjct: 245 NARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A+A+VILNQLY++T LQ  F V M+AL   KP+   L  +L  ++A +E+V+ RR
Sbjct: 305 DLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  L+              
Sbjct: 365 TRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALIS------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 412 -------------GFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              R+L IIK EL +VK +    RRTR+     +++ ED I  ED+V+T++H  Y+KR+ 
Sbjct: 459 DEGRILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMA 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR Q RGGKG  G+  +++DFV +L I +TH ++LFF++ G VY  K + +   S  
Sbjct: 519 LDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRA 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L L + E+IT ++     +    + Y+  ATK G V++  L +F  +++ G
Sbjct: 579 AKGTAIINLLQLEKDEKITAVIQV---KGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    E D++L TK G  + F    +R    R + GV+GISL  G
Sbjct: 636 LNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAMG-RAARGVKGISLNDG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M  +                                                   
Sbjct: 695 DEVIGMDTLSP------------------------------------------------- 705

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTV+ +G+GKRT + ++R  NR GKG+    V++  + G ++ +  V+ + +
Sbjct: 706 ----NAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTE--KTGDVIGLRVVHPDQE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++L++ +G +IR  +++I + SR T+GV + ST +++ V S+  + 
Sbjct: 760 LMLITTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASMAVMD 805


>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
          Length = 805

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/877 (41%), Positives = 544/877 (62%), Gaps = 86/877 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GK
Sbjct: 1   MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+++ RMAQ+++ R +L++G GNFGSVDGD  AA RYTE R+ K +  L+ 
Sbjct: 61  YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDT+D++ NYDG  +EP VL AR+PN+LVNG  GIAVGMATNIP H LGE++DG +A
Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  N DI +  LME I GPDFPT  +I+GR+GI+ AY TG+GSI++R    IE+ S  +E
Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIVGRSGIRRAYETGKGSIMMRAKVEIEQKSNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+V+L
Sbjct: 241 TIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT+Y L KA  RA
Sbjct: 301 NNLYKQTALQTSFGINMLALVDGQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S   + A+  LM +                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQ------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q +AIL++RL RLTGL R+ I  E  +L   I E   IL+   ++L II++E
Sbjct: 397 --FNLSEKQAQAILDMRLQRLTGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           LL +KD  +  RRT IV G ++ +EDED I RE++V+T++H GY+KR+P S YR+Q+RGG
Sbjct: 455 LLEIKDRFNDVRRTEIVAGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+   D+DFV  L   STH ++LFF++ G  Y+ K + +P  +  A+G  +IN+L 
Sbjct: 515 RGVQGMGTNDDDFVEHLLYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           + + E I T++   E +      Y+ F T+ G  +R  +SDF  I  +G IA+ L   DE
Sbjct: 575 IEKDEWINTMIRIEEFDEES---YLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDE 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV+    +  IL+ TK G  +RF    +R    R + GV+GI+L   D+V+SM I+  
Sbjct: 632 LISVKLTDGDKQILIGTKNGLLIRFDEKDVRSMG-RTATGVKGITLVNDDEVVSMEIIEE 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            D                                                      +L +
Sbjct: 691 DD-----------------------------------------------------HVLVI 697

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ GFGKRT + ++R+ +R GKG++  +++  ++ G LVAV  V   + ++L++  G LI
Sbjct: 698 TKHGFGKRTPASEYRLQSRGGKGLKTCNIT--DKNGPLVAVKSVTGEEDLMLITVHGVLI 755

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           R+ ++ I I  R T+GV + S  ++E V +  ++ + 
Sbjct: 756 RMDIHAISITGRNTQGVKLISLREEEYVATAAKVAKE 792


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/894 (43%), Positives = 566/894 (63%), Gaps = 90/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + +++ I  V+I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G   +K
Sbjct: 6   DVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLGFTPDK 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCA   GEV+GKYHPHG+AA+YD+L RMAQ++SLR   I+G GNFGS+DGDPPAA R
Sbjct: 66  AYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDPPAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 126 YTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG + VID+P++ LD LM+II+GPDFPT  +I+G+ GI++AYATG+G I+
Sbjct: 186 IPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIVGKQGIRDAYATGKGKII 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE+  G++++IVVTE+PYQVNKA ++E+IAELV+EKRI  I+DLRDESD+ G R
Sbjct: 246 VRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDESDKDGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAF 364
           +VIELK+ A+A+V+LNQLY+ T +Q  F+VNMVAL       ++P    L   +  ++  
Sbjct: 306 IVIELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAIDYYIKH 365

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+VRRTK+ L+KA  RAH+L GL IA+ NLDEV+ IIR S N   A+  L+QR    
Sbjct: 366 QEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALIQR---- 421

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    SE Q +AI+++RL RLT L R+ I NE   L  EI
Sbjct: 422 ----------------------FGFSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEI 459

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           K   D+L+++S +L IIK+EL  +K +    RRT+I+    ++E ED I  E+ VVT++H
Sbjct: 460 KYYKDVLANKSMVLDIIKKELEEIKQKYGDERRTKIIPDEDEIEIEDLIEVEENVVTLTH 519

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S Y++Q+RGGKG  G+  R+EDFV  LFI STH  +LFF++ G VY+ K +
Sbjct: 520 FGYIKRLPTSTYKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTY 579

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P    QA+G A++N+L L+Q E+ITT++P  E +     LY+  ATKHG V++  L +
Sbjct: 580 EIPEAGRQAKGTAIVNLLQLDQNEKITTVIPISEYKE---GLYLFMATKHGIVKKTDLME 636

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I + G  A+ L   DE++ V       +ILL T+ G  +RF    +R    R + GV
Sbjct: 637 FDNIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRPLG-RAAQGV 695

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +GI+L +                                      +E+  +  D      
Sbjct: 696 KGITLEED-------------------------------------DEVVGMSAD------ 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     ++   +L V+E+GFGKRT   ++++  R GKGI    V++  + G +  +
Sbjct: 713 ----------IENASVLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTE--KTGKVAGM 760

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V+++D ++++S  G++IR+   +I +  RAT+GV +    +   VVSV RI 
Sbjct: 761 KLVSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVSVVSVARIV 814


>gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 879

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/904 (42%), Positives = 565/904 (62%), Gaps = 86/904 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  +   +I  EM++S+L YA++VI+ RA+PD+RDG+KPVHRRIL+GM   G+  +K 
Sbjct: 4   DHDSKLKEQNIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R +L++GQGNFGS+DGD  AA RY
Sbjct: 64  YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  L+ D+ KDT+DF  NYDG+ +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 124 TEARMSKIAMELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G + +  NPDI +  LME+I+GPDFPT  +ILGR+GI+ AY TGRGS+++
Sbjct: 184 PPHNLTEVINGVLELSKNPDISIPELMELIQGPDFPTAGLILGRSGIRRAYETGRGSVIM 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R  + IE     +E I+++EIPYQVNKA ++EKIAEL R+K++  I DLRDE+  ++G R
Sbjct: 244 RAKTLIETRPNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R A+A+VILN LY+ T LQ+ F VNM+AL   KP+   +   +  ++  ++ VV
Sbjct: 304 IVIDVRRDANANVILNNLYKQTPLQTSFGVNMLALVDGKPQVLNIKQAIYHYLEHQKTVV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA DRAH+L GL IA+ ++DE++ +IR S N   A + L ++         
Sbjct: 364 RRRTAYNLKKAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQ--------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL RD I +E   L   I E   
Sbjct: 415 -----------------FKLSERQAQAILDMRLRRLTGLERDKIESEYQELLKYIDELRA 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   +LL II++EL+ ++D+    RRT IV  GL D+EDED I  E++V+T+S   Y+
Sbjct: 458 ILADEEKLLQIIREELIEIRDKYGDERRTEIVAGGLEDLEDEDLIDEENIVITLSSNNYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YRAQ RGG+G  G+   DEDFV+ +   STH +VLFF++ G VYK K + +P 
Sbjct: 518 KRLPASTYRAQHRGGRGIQGMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  ++N++ L++ E I+T++     E    + Y+VFATKHG ++R+ LS F +I
Sbjct: 578 LSRQSKGIPIVNVIDLDKDESISTMIAVKNLE--REDAYIVFATKHGLIKRSNLSHFSRI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N++GKIA+     DE+++V        +++ TK    +RF  + +R    R + GV+GIS
Sbjct: 636 NKNGKIAINFREEDELIAVRLTDGNKQLIIGTKHASLIRFEENKLRPLG-RTAAGVKGIS 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI + ++   D                                           
Sbjct: 695 LREGDEVIGLDVIESND------------------------------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L V+E G+GKRT   ++RISNR GKGI+   +++ N  G LV +  VN
Sbjct: 712 --------EHEVLVVTENGYGKRTKESEYRISNRGGKGIKTATITEKN--GNLVCITTVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV--DEA 906
            N+ I++V+D G +IR+ V E     R+ +GV +    + + V +V ++ + E V  ++ 
Sbjct: 762 GNEDIMIVTDHGVIIRLDVAEFSQNGRSAQGVRLIRLDEGQFVATVAKVEKEEEVMDEDK 821

Query: 907 ESTE 910
           E  E
Sbjct: 822 EPGE 825



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 109/269 (40%), Gaps = 16/269 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  +V  +  G +KR  LS +   R    G+  +  R+ED +  + +   +  ++  + 
Sbjct: 611 EDAYIVFATKHGLIKRSNLSHF--SRINKNGKIAINFREEDELIAVRLTDGNKQLIIGTK 668

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
              + + +  +L      A G   +  +SL +G+ +  +        S +   V+  T++
Sbjct: 669 HASLIRFEENKLRPLGRTAAG---VKGISLREGDEVIGLDVI----ESNDEHEVLVVTEN 721

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R K S++   NR GK    A   +    ++ + T     DI++ T  G  +R  ++
Sbjct: 722 GYGKRTKESEYRISNRGGKGIKTATITEKNGNLVCITTVNGNEDIMIVTDHGVIIRLDVA 781

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGD 768
                  R++ GVR I L +G  V ++A V   +    +  E    +    A    ++ +
Sbjct: 782 EFSQNG-RSAQGVRLIRLDEGQFVATVAKVEKEEEVMDEDKEPGEVIAEQGADLTEVAKE 840

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
           + + T    D  V G +       L+  E
Sbjct: 841 SIDETIEVEDGHVMGTVDVSEQNLLERSE 869


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/905 (43%), Positives = 563/905 (62%), Gaps = 86/905 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D   +  I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  
Sbjct: 2   ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGS
Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLILGKSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R  + IE+  G R++IVVTEIPYQVNKA M+EKIAEL REKRI  I DLRDE+  R 
Sbjct: 242 IQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLRT 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVI++++ A+A+VILN LY++T LQ+ F VNM+AL   +P+   L   L  ++  ++
Sbjct: 302 GVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALVNGRPKLINLKEALVEYLEHQK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L +R      
Sbjct: 362 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQER------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q +AIL++RL RLTGL RD I NE N L   I E
Sbjct: 416 --------------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAE 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHL 545
             +IL++   LL +++ EL  +K+     RRT I  G LD +EDED I  E +V+T+SH 
Sbjct: 456 LEEILANEEVLLQLVRDELTEIKERFGDERRTEIQLGGLDHLEDEDLIPEEQIVITLSHN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + 
Sbjct: 516 NYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYE 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S Q++G  +IN + L   E I+T++   + E    N ++VFATK G V+R+ LS+F
Sbjct: 576 VPELSRQSKGIPVINAIELENDEVISTMIAVRDLED--ENSFLVFATKKGIVKRSALSNF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN++GKIA+     DE+++V     + DILL T     +RFP +++R    R + GVR
Sbjct: 634 SHINKNGKIAIGFKEDDELIAVRLTDGKQDILLGTAHASLIRFPENSLRPLG-RTASGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL + D V+ + +      D                                      
Sbjct: 693 GISLRENDVVVGLDVAYAESED-------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V+EKG+GKRT   ++R+SNR GKGI+   +++ N  G +V + 
Sbjct: 715 -------------EVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNVVCIT 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  + +++V+D G +IR+ V +I    RAT+GV +     ++ V +V ++   +  ++
Sbjct: 760 TVSGQEDLMIVTDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKVI--DKTED 817

Query: 906 AESTE 910
             +TE
Sbjct: 818 EAATE 822


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/891 (43%), Positives = 558/891 (62%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++++ A+A VILN LY+ T LQS F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RIVIDVRKDANASVILNNLYKQTPLQSSFGVNMIALVNGRPKLINLKEALIHYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++     ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELENDETISTMIAVRNLESEDD--YLVFATKRGIVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RFP SA+R    R + GV+GI
Sbjct: 635 INKNGKIAISFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHAESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +    + + V +V +++
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTVAKVK 811


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/894 (42%), Positives = 551/894 (61%), Gaps = 87/894 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+GM ++G  ++K Y 
Sbjct: 4   QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMGKYHPHG+ AIYD + RM QD+SLR  LI+GQGNFGSVDGD  AA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +LDDL K+TV+F PN+D S +EP VL A+ PN+L+NG  GIAVGMATNIP 
Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG VA+I++P I+   L+++I GPDFPTGA I GR GIK+AY TGRGSI IR 
Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIYGREGIKDAYLTGRGSIKIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I    G R  I+VTEIPY VNKA ++E IA+LVR+K++  I+DLRDESDR G R+VI
Sbjct: 244 KAEI-TEEGGRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+GA+A+V+LNQLYR+T +++ F VN +AL   +P   +L   L+ ++  R+EVV RR
Sbjct: 303 ELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQPRTLSLKETLEYYLKHRQEVVTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L KA+ R H+L GL +A+ N+D+ V I+R S + + A+   M +            
Sbjct: 363 SQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSK------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q++AIL++RL  LTGL R  I +E   L   I    ++L+
Sbjct: 411 --------------YGLSEEQSKAILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L IIK ELL ++ +    RRT I E   ++ DED I  E++VVT+S+ GY+KR P
Sbjct: 457 SPQMVLDIIKNELLELRAKYGDGRRTIIKESDGEIVDEDLIPVENVVVTISNTGYIKRQP 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  YR QRRGG G  G+  ++EDFV D+F  STH  +LFF++ G VY  KV+ +P  S Q
Sbjct: 517 VDTYRTQRRGGMGIMGMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQ 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGKA++N+L+L   E +  ++P  E +      Y++  T+ G +++  LS F  I R+G
Sbjct: 577 SRGKAIVNLLTLMPNESVNAMIPIKEFDE---KHYLIMCTREGTIKKTALSSFQNIRRTG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  DE++SV+      ++L+ T+ G+  RF  S +R    R + GV GI L + 
Sbjct: 634 IIAIGLDEGDELISVKLTNGGQEVLIATRNGKANRFSESEVRPMG-RQAGGVIGIRLTEK 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M                                                     E
Sbjct: 693 DKVIGM-----------------------------------------------------E 699

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +   ILTV E GFGKRT+  ++   +R G+G+     +  N  G +VA+  V D+DQ
Sbjct: 700 VVSESASILTVCENGFGKRTAISEYTPHHRGGQGMINIKTTLRN--GGVVAIASVTDDDQ 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDE 905
           +++V+  G ++R+ V +I   SR T+GV I +   +++ VV V ++   +  +E
Sbjct: 758 LLVVTRDGIMMRINVKDISEISRNTQGVKIITLKSENDAVVGVAKLVSEKKEEE 811


>gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.]
          Length = 808

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/891 (40%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + ++ ++I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++  +WNK Y
Sbjct: 3   ETEKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGDPPAA RYT
Sbjct: 63  KKSARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + A  +++DL K+TVD  PNYD S  EP +L A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 EIRLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV +    +IDNPDI  + L++I+ GPDFPT  +I GR+GI +AY+TGRG + +R
Sbjct: 183 PHNLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGIIHGRSGIYDAYSTGRGKVKVR 242

Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E    ++ E IVVTE+PY VNKA ++EKIAEL+R+K+I  +  +RDESDR+G R+
Sbjct: 243 ARVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            + LK+   + +I+N LY++T ++S F +  +A+   +PE  TL  IL+ FV  R+++++
Sbjct: 303 ALGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVVNNRPEVLTLKQILEYFVLHRKDIII 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTK+ L KA  RAH+L GL +A+ N+DEV+ +I+ S +P  A++ L+ R          
Sbjct: 363 KRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISR---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++ +Q +A+L++RL RLTGL R+ I  E ++L  +I    +I
Sbjct: 413 ----------------FDMTPIQAQAVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S + +L IIK EL  +K+E    RRT I++   ++  ED IV EDMVVTVS  GY+KR
Sbjct: 457 LASETLVLNIIKDELTQIKNEYGDLRRTEIIDETENISIEDLIVEEDMVVTVSKDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+Y +Q RGGKG++ ++ ++EDFV+ LF+ STH   LFF++ G VY  KV+ +P   
Sbjct: 517 TPASIYNSQSRGGKGKTAMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GKA++N+L+  +GE++TT++   + E      +V+ AT+ G ++R  +  + +   
Sbjct: 577 RTSKGKAIVNLLNFAEGEKLTTVLAVKDFE---PGSFVIMATRSGQIKRTDIMAYSRPRA 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+KLD  DE+++V       ++ + + +G+ +RF  S IR   GR + G+RG+ LA
Sbjct: 634 GGIKALKLDEGDELIAVRITDGTLNVFVCSAMGKSIRFHESDIRA-TGRVTGGIRGMRLA 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           KGD+++ M                                                    
Sbjct: 693 KGDRIVGM---------------------------------------------------- 700

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+    Q +  V+E GFGKRTS  ++ +  R GKG+     S+ N  G +VA+  V+++
Sbjct: 701 -EVLTHGQTLFAVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERN--GQVVAILIVDED 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D ++L++D G +IR P++ I + SR T+GV + +    E+V+   R+ E +
Sbjct: 758 DDLMLMADSGKIIRTPISGISVISRNTQGVKLINREATEKVIGAARLAEKD 808



 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 109/287 (37%), Gaps = 24/287 (8%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEIL 685
           E I        ++       VV  +K G ++R   S +   +R   GK AM     D + 
Sbjct: 485 EIIDETENISIEDLIVEEDMVVTVSKDGYIKRTPASIYNSQSRGGKGKTAMMTKEEDFVS 544

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVL 742
            +   +  +  L  T  G+     +  I   AGR S G   V  ++ A+G+++ ++  V 
Sbjct: 545 MLFVASTHHYFLFFTNQGKVYWCKVYDI-PEAGRTSKGKAIVNLLNFAEGEKLTTVLAVK 603

Query: 743 HADADYDERICYMK------HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
             +      +           + A  R  +G  + +   + D  +   I++         
Sbjct: 604 DFEPGSFVIMATRSGQIKRTDIMAYSRPRAGGIKALKLDEGDELIAVRITD--------G 655

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +   S  G   R    D R + R   GIR   ++K +    +V +  +     +  V
Sbjct: 656 TLNVFVCSAMGKSIRFHESDIRATGRVTGGIRGMRLAKGDR---IVGMEVLTHGQTLFAV 712

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEI 902
           ++ G   R  ++E  +  R  KGV+   T++ + +VV++  + E + 
Sbjct: 713 TENGFGKRTSIDEYPVHKRGGKGVICIKTSERNGQVVAILIVDEDDD 759


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/898 (43%), Positives = 559/898 (62%), Gaps = 84/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +      D                                        
Sbjct: 694 SLREGDNVVDLDVADSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              + +++V++ G +IR+ V++I    RA +GV +      + V +V +++E +  +E
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEE 818


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/891 (41%), Positives = 542/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG   EPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  + ++ +IVV EIPYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKATIE-ENNNKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFYYLEHQVIVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I NE   L  +I E  +
Sbjct: 413 -----------------FGLSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFSDERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    E+  ++ ++ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNFLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R    R++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMG-RSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                                                                    E  
Sbjct: 692 DDD-----------------------------------------------------DEVI 698

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  +E  IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 699 GMDVVDRELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S
Sbjct: 757 EEDLMIITSSGTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVCRADKS 807


>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A
 gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A
 gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
 gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
 gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 887

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
 gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
          Length = 813

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/884 (42%), Positives = 547/884 (61%), Gaps = 87/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +++I DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRI + M ++  ++NK Y K 
Sbjct: 2   DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+YDAL RMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +  H  + D+ K+T+ F+PNYD +  EPVVL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+  G +A++D+PDI +  LM  I GPDFPT   I G  GIK+AY TGRG+I +R   
Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCVGIKDAYETGRGTIKMRARV 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E  SG R  +++TE+PYQVNKA +LE+IAELV++K+I  I D+RDESDR+G RVV+ L
Sbjct: 242 EVE-ESGRRNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLTL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++G    VI NQLY++T+L+S F V M+A+   KPE   L G+L  F+ FR  V++RRT+
Sbjct: 301 RQGDEPRVIENQLYKHTALESSFGVIMLAVVDNKPEVLNLKGVLNNFLDFRRLVIIRRTQ 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A  RAH+L GL  A+ +LDEV+ +IR +  P  A++ LM+R              
Sbjct: 361 YELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMER-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S+VQ +AILE+RL RLTGL R+ I  E   +  EI+    ILSS 
Sbjct: 407 ------------FEFSDVQAQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSA 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +  +I++E+  + D+    R+T I+    ++  ED I  E+MVVT+S  GY+KR PLS
Sbjct: 455 ALVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLS 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VYR+QRRGGKGR+G+  R+ED VT LF  STH  +L F++ G VY  KV+ +P   P A 
Sbjct: 515 VYRSQRRGGKGRTGMSTREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSAL 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L + + ERI T++P  E +  +   + V AT++G +++  LS +     +G  
Sbjct: 575 GKAIVNLLPVQKDERIQTVLPVKEFKEGF---FAVMATRNGVIKKTDLSAYSNPRSTGIR 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++SV      +D+ L ++ G+ +R      R    R S GVRG+ L  G +
Sbjct: 632 AIVLDDDDELISVCVTDGSHDLFLMSRAGKSIRVNEREFRPLG-RVSRGVRGMKL-DGSR 689

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ M ++    A                                                
Sbjct: 690 MVGMDVIEEGKA------------------------------------------------ 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL ++EKGFGKRT++ ++R  +R GKG+    V++ N  G++V    V +++QI+
Sbjct: 702 -----ILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERN--GSVVGFRQVGEDEQIL 754

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++D G LIR+PV +I    R T+GV + +  + E+VV V  + 
Sbjct: 755 MITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDVAVLP 798


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/898 (43%), Positives = 558/898 (62%), Gaps = 84/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R    R + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +      D                                        
Sbjct: 694 SLREGDTVVGLDVADSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEE 818


>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 893

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/912 (43%), Positives = 560/912 (61%), Gaps = 86/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E ++ + E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+
Sbjct: 1   MKEELLMA-ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGL 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+
Sbjct: 60  NEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSM 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  
Sbjct: 120 DGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ A
Sbjct: 180 GIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLR
Sbjct: 240 YETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLR 299

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE+  R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L 
Sbjct: 300 DETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALV 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L Q
Sbjct: 360 HYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQ 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE Q +AIL++RL RLTGL RD I  E N 
Sbjct: 420 R--------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDM 538
           L   I E   IL+    LL +++ EL  ++D     RRT I  G  + +EDED I  E +
Sbjct: 454 LLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQI 513

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T+SH  Y+KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G V
Sbjct: 514 VITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRV 573

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YK K + +P  S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+
Sbjct: 574 YKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R+ LS+F +INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    
Sbjct: 632 RSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG- 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+GI+L +GD+V+ + +      D                               
Sbjct: 691 RTATGVKGITLREGDEVVGLDVAHANSVD------------------------------- 719

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  
Sbjct: 720 --------------------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN-- 757

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V +  V   + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 758 GNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 817

Query: 899 ESEIVDEAESTE 910
           E +  DE    E
Sbjct: 818 E-DAEDETNEDE 828



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 609 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 666

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 667 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 719

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 720 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 779

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 780 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 834

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 835 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 874


>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 837

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/883 (43%), Positives = 557/883 (63%), Gaps = 81/883 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ ++K ARI 
Sbjct: 13  ISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARIV 72

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD L RMAQ +S+R  L++GQGNFGSVDGDPPAA RYTE R+ + 
Sbjct: 73  GDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTRI 132

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              L+ DL K+TVDF PNYD S  EP+VL AR PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 133 DQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLREV 192

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG +A+I++P+I + ALME I GPDFPTGA I GR GI+ AY TGRGS+++R    +EK
Sbjct: 193 IDGLIAMIEDPNITVSALMEHISGPDFPTGAYICGRAGIREAYETGRGSLMLRSRCEVEK 252

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               RE I++TEIPYQ NK  ++E+IA LV+EK+I  I+++RDESDRQG R+V++LK+  
Sbjct: 253 QKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLKKDE 312

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V++NQLY+ T LQ  + + ++++   +PE   L  IL+ F+  R+ VV RRT + L 
Sbjct: 313 NAEVVINQLYKMTPLQRGYGIILLSIVNNRPEILNLRQILEHFILHRKTVVYRRTAHDLR 372

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA ++AH+L GL IA+ NLDEVV +I+ S NP  AR  L+ R                  
Sbjct: 373 KAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINR------------------ 414

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LS +Q +AILE+RL RLTGL R+ I  E  +L  EI+    +L+  S +L
Sbjct: 415 --------FALSAIQAQAILEMRLHRLTGLEREKIIEEYQALMKEIEWLRRVLADESLVL 466

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II+QE  +++++    RRT I+E   ++  ED I REDMVVTV+H GY+KR P+ +YRA
Sbjct: 467 QIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVVTVTHAGYIKRNPVDLYRA 526

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG  G    D+DF++ + + STH ++LFF++ G V+  KV+ +P     ARGKA+
Sbjct: 527 QRRGGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLARGKAV 586

Query: 619 INILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +N+L L   E++  I+P    E       Y++ AT+ G V++  + +F +  R GKIA+ 
Sbjct: 587 VNLLDLAPEEKLAAILPVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIALT 646

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               DEIL+      +N+ILL ++ G  VRF    IR    R + GVRGI+L   D+++ 
Sbjct: 647 FREDDEILAAALTYGDNEILLLSRKGMAVRFHEGDIRPMG-RGATGVRGINLGSADELVG 705

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           ++++                                                       E
Sbjct: 706 VSVLSGD---------------------------------------------------PE 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             IL V+E G+GKRT   ++R+  R GKG+ A   S+ N  GA+V +  V D DQ+++++
Sbjct: 715 TSILVVTENGYGKRTLVDEYRLIRRGGKGVMAIKASERN--GAVVGMLQVTDEDQVMMIT 772

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + G +IR+P+ ++R+  R T+GV +F+   +E+VV+++R+ ES
Sbjct: 773 NAGQIIRMPMTDLRVIGRNTQGVRLFNLGAEEKVVALDRLAES 815


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/904 (43%), Positives = 558/904 (61%), Gaps = 85/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVT+IPYQVNKA M+EKIAELVREK+I  I DLRDE+  R G 
Sbjct: 243 MRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A+VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I NE N L   I E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADDEVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L+  E I+T++     E    + Y+VFATK+G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVINAIELDNDETISTMIAVRNLED--EDSYLVFATKNGIVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V       DIL+ T     +RF  +++R    R + GVRGI
Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPLG-RTAAGVRGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL + D V+ + +      D                                        
Sbjct: 694 SLREDDVVVGLDVAHADSED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEA 906
           N  + +++V++ G +IR+ V +I    RAT+GV +     D+ V +V + I ++E  D  
Sbjct: 761 NGEEDLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDAT 820

Query: 907 ESTE 910
           E+ +
Sbjct: 821 EAAQ 824


>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 884

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/904 (43%), Positives = 559/904 (61%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 906 AEST 909
            +ST
Sbjct: 821 EQST 824



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 109/273 (39%), Gaps = 14/273 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L   DQ +S    +  DAD                
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTE 831

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                     +  N    E   SEE  ++ +++
Sbjct: 832 QQREAVVSDEAPGNAIHTEVIDSEENDEDGRIE 864


>gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
 gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
          Length = 914

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/913 (41%), Positives = 541/913 (59%), Gaps = 66/913 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  + +    E +    ++I +E++ SYLTYA++VI+ RA+PD RDGLKP  RRIL  M
Sbjct: 1   MSIAVATPPPSEPREPLPLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+       KCA I GE M +YHPHG+ +IY  LARMAQ W++R LL+ GQGNFGS+
Sbjct: 61  LDLGLTPGGSTSKCAGIVGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G PPAA RYTE +L   A  +LDD+  DTVDF+P+YD   QEP VL AR+PN+LVNG G
Sbjct: 121 HGLPPAAMRYTEAKLSPVAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGEV D  +A+IDNP ID + L+E + GPDFPTG VI GR GI+ A
Sbjct: 181 GIAVGMATSIPPHNLGEVCDALIALIDNPAIDFEDLIEKLPGPDFPTGGVICGRMGIREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R    +E+T   R QIV TEIPYQ+ K  +L+K+ +LV   RI  IAD+ 
Sbjct: 241 YLTGRGRIVLRAKHVVEETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVV 300

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DESD RQ  R+V++LKR    +VILNQLY+Y+ LQ  F V M+AL   +P+  TL  +LK
Sbjct: 301 DESDRRQPVRIVVKLKRNEDPNVILNQLYQYSPLQDTFGVIMLALVDGRPKTLTLRELLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  V+ RRT +LL + R RAHV+ GL IA+  +DE++ IIR SPNP  AR  LM 
Sbjct: 361 IYLDHRANVIRRRTAFLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMG 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +     ++  ++  +       +  T  L+  Q  AIL +RL +LTGL  D +  E   
Sbjct: 421 MAVGPDVMRRALNDPE-------AQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRE 473

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED-M 538
           L   I +  DIL+   R+  IIK +L  +K +   PRRT I +  L   D++ ++RE+ M
Sbjct: 474 LRAAIADAEDILAREVRVREIIKADLEELKRKYADPRRTVISDEELGSYDKEALIREEYM 533

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT++  GY+KR+P S YRAQ RGG+G++    ++ DF+  +F+  TH  +LFF+  G +
Sbjct: 534 VVTITDGGYIKRLPPSTYRAQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLI 593

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +  KV+ +PI    A G+A++N+L L +GERIT ++P        +N ++  AT+ G V+
Sbjct: 594 HWLKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVR---RFPDNEFLFMATRRGTVK 650

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS + +  R G IA+ L+  D++++V      + ++L+T+ G  +RF  S +R    
Sbjct: 651 KTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPMG- 709

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L   DQV+ M +    D                                 
Sbjct: 710 RPACGVRGIRLEGDDQVVGMVVANGPD--------------------------------- 736

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LTV   GFGKRT   ++R  +R GKG+     ++ N  
Sbjct: 737 -----------------DPASLLTVCSNGFGKRTRLSEYRAQHRGGKGLIDIKTTERN-- 777

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA+  V D D+++L +++G LIR  ++E R   R T+GV +    + +RVV++ ++ 
Sbjct: 778 GPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRVVALAKLP 837

Query: 899 ESEI-VDEAESTE 910
           ESE+  D+ +  E
Sbjct: 838 ESELSQDQPDVAE 850


>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A
 gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 887

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I  G  + +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
 gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
          Length = 887

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTAHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSID---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 112/281 (39%), Gaps = 15/281 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 597 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 652

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  ++   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 653 AVRLTSGQEDILIGTAHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 706 VAHANSIDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 765

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     D        
Sbjct: 766 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQS 824

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                             +  N    E   SEE  ++ +++
Sbjct: 825 TVSEDGTEQQHEAVVNDETPGNAIHTEVIESEETDEDGRIE 865


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/891 (44%), Positives = 557/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIE-EHHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  + E   +  Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSE---DIKYIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR    R + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPMG-RVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHP----------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 705 ------NSEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 115/292 (39%), Gaps = 25/292 (8%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L+L  GE    I+   +    + +      T+       K  +   I    KIA  LD 
Sbjct: 332 MLALVDGEP--KILNLKQIIEKYVDHQADVVTRRTKFDLRKAEERAHILEGLKIA--LDH 387

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQV 735
            DE+++         I+ +++     +  +      + + +  +  + L      +  +V
Sbjct: 388 IDEVIN---------IIRSSRTEAIAKQNLMDKFGLSEKQAQAIVDMRLGRLTGLERQKV 438

Query: 736 IS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              +  ++    +  E +   + +    +    + ++  +    +S+     E   ++L 
Sbjct: 439 EDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLV 498

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ++T++  G+ KR     ++   R GKGI      + + +  +   F    +D+++
Sbjct: 499 QLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDFVEDI---FITTTHDRLL 555

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
             ++KG +  +   +I    R  KG   V +   A+ E+V +V  +++SE +
Sbjct: 556 FFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDI 607


>gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 861

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/891 (41%), Positives = 536/891 (60%), Gaps = 55/891 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  ++I +EM+ SYL Y+++VI+GRA+PD+RDG KPVHRRIL+ M +MG++ NKKY KC
Sbjct: 2   NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ G+ MG YHPHG++AIYD L R+AQ +SLR  +I+GQGNFGSVDGDPPAA RYTECR
Sbjct: 62  AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+  +TVDF PNYD S  EP VL  + PN++VNG  GIAVGMATNIP HN
Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++  + +++NP   L  +++ ++GPDFPTG  I GR+GI NAY TGRG  ++R  +
Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIYGRSGIANAYRTGRGRFLMRAKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    R  I+VTEIPYQVNKA ++E++A+LV +K I +I+D+RDESDR G R+VIEL
Sbjct: 242 SIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA A ++LNQLY++T +Q  FS+  +A+   +P    L   ++ F+  R +VV RRT 
Sbjct: 302 KRGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQPRELPLPDAIRHFIDHRVDVVRRRTA 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ----RSWNASDIKDL 430
           YLL KAR+R H+L+G  IA+ +LD V++IIR S +   AR  L Q    R+    D    
Sbjct: 362 YLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEALA 421

Query: 431 IDLIDDSSYTIGS----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              +D   Y I      + T+ LS  Q  AILEL+L RLT L  D++  EL  +   I E
Sbjct: 422 GVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERIAE 481

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  +L  +I +EL  V+      RRT+IV+   +++ ED I  E + VTVSH G
Sbjct: 482 YESILASEKKLRSVIVKELEDVRKAYGDERRTQIVDETAELQLEDLIADEQVAVTVSHSG 541

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR P+S YR Q+RGG GR G+  R+EDFV  L + STH  +L F++ G VY  K++ +
Sbjct: 542 YLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTGRVYWLKIYEI 601

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +GK++ ++L+L  GE++  IM   +   +    ++ FAT++G V++  L DF 
Sbjct: 602 PDVGAAGKGKSIASLLNLQPGEQVRAIMAVRDL--TEEGKFIFFATRNGTVKKTPLKDFS 659

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +   G IA+ +D  DE++          + L T  G  +RF  + +R    R + GVRG
Sbjct: 660 NVMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSMG-RPARGVRG 718

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L K D V+ MA                       R +  D                  
Sbjct: 719 IDLGKKDHVVGMAATPKD------------------RGVGDDG----------------- 743

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                  K     IL+V++ G+GKRT   ++R+  R GKG+     +  N  G +V++  
Sbjct: 744 -------KACACLILSVTQNGYGKRTDVDEYRLQTRGGKGVINVKTTAKN--GKVVSIQL 794

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+D  +++++S  G +IR+    +R A R+T+GV + +   +++V +   I
Sbjct: 795 VDDTSELMVISQYGKIIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAAAVVI 845


>gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A
          Length = 889

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|167036442|ref|YP_001664020.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/891 (44%), Positives = 557/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGSVDGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIE-EHHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  + E   +  Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSE---DIKYIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR    R + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPMG-RVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHP----------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 705 ------NSEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 114/292 (39%), Gaps = 25/292 (8%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L+L  GE    I+   +    + +      T+       K  +   I    KIA  LD 
Sbjct: 332 MLALVDGEP--KILNLKQIIEKYVDHQADVVTRRTKFDLRKAEERAHILEGLKIA--LDH 387

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQV 735
            DE++++   ++   I          +  +      + + +  +  + L      +  +V
Sbjct: 388 IDEVINIIRSSKTEAIA---------KQNLMDKFGLSEKQAQAIVDMRLGRLTGLERQKV 438

Query: 736 IS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              +  ++    +  E +   + +    +    + ++  +    +S+     E   ++L 
Sbjct: 439 EDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLV 498

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ++T++  G+ KR     ++   R GKGI      + + +  +   F    +D+++
Sbjct: 499 QLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDFVEDI---FITTTHDRLL 555

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
             ++KG +  +   +I    R  KG   V +   A+ E+V +V  +++SE +
Sbjct: 556 FFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDI 607


>gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
 gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
          Length = 841

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/916 (40%), Positives = 522/916 (56%), Gaps = 93/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +  +       +  V I  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPPN---SRGRVEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 58  YDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL +R PN+LVNGG 
Sbjct: 118 GNDPAAAMRYTEARLDPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EVVDG +  +DNPD D +     LM+ I+GPDFPT   ILG  G
Sbjct: 178 GIAVGMATNIPPHNLREVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGTQG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V  +E+ +  R  +VVTE+PYQVN   ++E IA L R+ +I  I
Sbjct: 238 IADAYRTGRGSIRMRAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGI 297

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+ DES+ R G R+VI LKR A A V+LN LY++T LQ  F VNM+AL    P    L 
Sbjct: 298 ADIADESNSRGGMRIVITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAHVL GLA A+ +LD V+ +IR SPN + AR 
Sbjct: 358 QMVRHYVNHQIDVIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEART 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + EVQ  AIL+++L +L  L R  I +
Sbjct: 418 GLME--------------------------LLDIDEVQATAILDMQLRKLAALERQRILD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +I +  D+L    R   I++ ELL + ++    RRT+I+    D+  ED I  
Sbjct: 452 ELAELEAKIADLQDVLDKPERQREIVRTELLEITEKYGDDRRTKIIPYEGDVSIEDLIAE 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  VLFF++ 
Sbjct: 512 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNK 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI +++  P  E +    Y++  TK G
Sbjct: 572 GRVYRAKAYDLPEANRNARGQHVANLLAFQPDERIASVIQIPNYEVA---PYLILGTKKG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+DF      G I + L   DE++     + E+D+LL +  GQ +RF  +   +
Sbjct: 629 LVKKSRLADFDSPRSGGLIGINLREGDELVGAVLASAEDDLLLVSSDGQSIRFHANDEVL 688

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+   +G +++S+ ++                                 
Sbjct: 689 RPMGRATSGVLGMRFNEGAELLSINVIKPG------------------------------ 718

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +E G+ KRT+  D+ +  R GKG+      +
Sbjct: 719 -----------------------TFLLVATEGGYAKRTAVEDYPVQGRGGKGVLTIQHDE 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LVA   V+ +D++  ++  G +IR P  E+R ASR TKGV + +  +   +++V
Sbjct: 756 --KRGRLVAALIVDADDELYAITSSGGVIRTPAAEVRRASRQTKGVRLINLGEGNTLLAV 813

Query: 895 ERIRESEIVDEAESTE 910
            R  +      AE  E
Sbjct: 814 ARNADRPSDVSAEEAE 829


>gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
 gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
          Length = 915

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/898 (41%), Positives = 543/898 (60%), Gaps = 30/898 (3%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D    K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN
Sbjct: 6   DHRFAKETIPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWN 65

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R +L++GQGNFGSVDGD  AA 
Sbjct: 66  SSYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAM 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K AH +L D+ +DTV+F PNYDGS QEP+V+  R+P++L NG  GIAVGMAT
Sbjct: 126 RYTEIRMAKIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLG+ VD C+ ++ +PD  +DAL++ I+ PDFPTGA I G  G++  Y TGRG +
Sbjct: 186 NIPPHNLGDTVDACLQLLADPDTSIDALIDTIKAPDFPTGATIYGLAGVREGYRTGRGRV 245

Query: 249 VIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           V+RG +HIE     G+RE I++ EIPYQVNKA ++EKI ELVREK +  I+DLRDESD+ 
Sbjct: 246 VMRGKTHIEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKS 305

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL  F+  R 
Sbjct: 306 GMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQILAEFLRHRR 365

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR   H+  G A+A++N+D ++++I+ S +   A+ +L+ R W +  
Sbjct: 366 EVVTRRTLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGL 425

Query: 427 IKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           + D++   D        +G            YLS++Q  AIL + L  LTGL +D I  +
Sbjct: 426 VGDMLSRTDLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILAD 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
             ++  +I + LDIL+   R+  II  EL+ +K     PRR+ I     D+ DED I   
Sbjct: 486 YKTIMAQIIDFLDILAKPERITQIIHDELIEIKTNFGDPRRSEINPFGGDIADEDLIPPR 545

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  ++ F++ G
Sbjct: 546 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG 605

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             +  KV++LP G   +RG+ + N++ L++ E+++ I+P  +      + YV FAT  G 
Sbjct: 606 RCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRD---FPEDEYVFFATAMGV 662

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++ +LS F  +++ G  A+ L   D ++ V   +  NDI+L + LG+ +RF     R  
Sbjct: 663 VKKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIRFNEYWERSS 722

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
               +           D  IS +     D + +      KH        SG    +   +
Sbjct: 723 DDEETG-------DDNDTEISGS---QEDDNAESAPISGKHGVRPSGRGSGGLRGMRLPE 772

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V        C++    E  +LT +  G+GKRT    +   N+ G+G  A +  + N
Sbjct: 773 NGRIVSLITFAPECEQ---SELQVLTATANGYGKRTPIASYSRKNKGGQGNIAINTGERN 829

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             G LVA   V+++D ++L++  G LIR  V +IR   RA  GV + +  + E +VS+
Sbjct: 830 --GDLVAATLVSESDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSL 885


>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 889

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/904 (43%), Positives = 557/904 (61%), Gaps = 85/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVT+IPYQVNKA M+EKIAELVREK+I  I DLRDE+  R G 
Sbjct: 243 MRARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A+VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I NE N L   I E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADDEVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L+  E I+T++     E    + Y+VFATK+G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVINAIELDNDETISTMIAVRNLED--EDSYLVFATKNGIVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V       DIL+ T     +RF  +++R    R + GVRGI
Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPLG-RTAAGVRGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL + D V+ + +      D                                        
Sbjct: 694 SLREDDVVVGLDVAHADSEDG--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEA 906
           N  + +++V++ G +IR+ V +I    RAT+GV +     D+ V +V + I ++E  D  
Sbjct: 761 NGEEDLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDAT 820

Query: 907 ESTE 910
           E+ +
Sbjct: 821 EAAQ 824


>gi|167038685|ref|YP_001661670.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/891 (44%), Positives = 557/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +V
Sbjct: 243 RAKAEIE-EHHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P    + S +  YVV  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIGQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR    R + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPMG-RVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHPG---------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+EKGFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 706 -------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 112/292 (38%), Gaps = 25/292 (8%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L+L  GE    I+   +    + +      T+       K  +   I    KIA  LD 
Sbjct: 332 MLALVDGEP--KILNLKQIIEKYVDHQADVVTRRTKFDLRKAEERAHILEGLKIA--LDH 387

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQV 735
            DE++++   ++   I          +  +      + + +  +  + L      +  +V
Sbjct: 388 IDEVINIIRSSKTEAIA---------KQNLMDKFGLSEKQAQAIVDMRLGRLTGLERQKV 438

Query: 736 IS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              +  ++    +    +   + +    +    + ++  +    +++     E   ++L 
Sbjct: 439 EDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLV 498

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ++T++  G+ KR     ++   R GKGI      + +    +  +F    +D+++
Sbjct: 499 QLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDD---FVRDIFITTTHDRLL 555

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
             ++KG +  +   +I    R  KG   V +    + E+V +V  +++S+ +
Sbjct: 556 FFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPLKKSQDI 607


>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 840

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 532/894 (59%), Gaps = 78/894 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +EMQ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+  ++ Y KCA
Sbjct: 4   IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL R+AQD+S R LLI+G GNFGSVD DPPAA RYTECRL
Sbjct: 64  RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  L  DL  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H 
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG  A++ NP++ +  LM  I GPDFPTG  ILG++GI+ AY TGRGSI +RGV+
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243

Query: 255 HIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE        DRE IV+TE+PYQV KAA++EKIAELV +KRI  I+D+RDESDR G R 
Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN L++ T LQ+ F  NM+AL   +P    L   L+ F+ FR EV+ 
Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L+G+ +A+ANL+ V+ +IR + +  +AR EL+ R          
Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTG+    I  E   L  +I +  D+
Sbjct: 414 ----------------FELSEAQAEAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+  II+ ELL+ K  L+ PRRT I +   +++D D I  ++MVV V+  GY+KR
Sbjct: 458 LERRERIDQIIRDELLTAKQRLNDPRRTIIEKAEGEIDDADLIANQEMVVLVTEQGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  +  QRR  +G+SG  MR++D V        H +VLFF++ G VY  + +++P GS
Sbjct: 518 LPVDTFDRQRRATRGKSGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L +   E++T+I+P  E  S   + ++V  T+ G +++  L+ F  +  
Sbjct: 578 RTAKGTPVVQLLPIPIEEKVTSIVPVQEFAS---DEFLVMLTRTGFIKKTALAAFANLRA 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA+ L+  DE+  V     E+DIL+ ++ G  +RF     ++   GR + GV+ + L
Sbjct: 635 NGLIAIGLEEGDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARGVKSMEL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            KGD+++SM I+                                              ER
Sbjct: 695 RKGDELVSMDIL-----------------------------------------SCEQRER 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +       ++L V+  GFGKR    +FR  NR G G+ AT     ++   L A+  V+ 
Sbjct: 714 AEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKF--RDQGDELAALRVVSC 771

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            D++++V+ +G +IR    EI   SRA  GV +    +D+ +V V  + ES   
Sbjct: 772 EDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVVPESAED 825


>gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
 gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
 gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
 gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
          Length = 887

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I  G  + +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
          Length = 889

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHENSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/891 (44%), Positives = 557/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIE-EHHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  + E   +  Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSE---DIKYIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR    R + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFDEKDIRPMG-RVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHP----------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 705 ------NSEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 115/292 (39%), Gaps = 25/292 (8%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L+L  GE    I+   +    + +      T+       K  +   I    KIA  LD 
Sbjct: 332 MLALVDGEP--KILNLKQIIEKYVDHQADVVTRRTKFDLRKAEERAHILEGLKIA--LDH 387

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQV 735
            DE+++         I+ +++     +  +      + + +  +  + L      +  +V
Sbjct: 388 IDEVIN---------IIRSSRTEAIAKQNLMDKFGLSEKQAQAIVDMRLGRLTGLERQKV 438

Query: 736 IS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              +  ++    +  E +   + +    +    + ++  +    +S+     E   ++L 
Sbjct: 439 EDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLV 498

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ++T++  G+ KR     ++   R GKGI      + + +  +   F    +D+++
Sbjct: 499 QLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDFVEDI---FITTTHDRLL 555

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
             ++KG +  +   +I    R  KG   V +   A+ E+V +V  +++SE +
Sbjct: 556 FFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDI 607


>gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
 gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
          Length = 886

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/904 (43%), Positives = 559/904 (61%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 906 AEST 909
            +ST
Sbjct: 821 EQST 824



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--ADADYDERICYMKHMSAQ 761
             +R  ++ I     R + GVR I L     V ++A V     + + DE+    +  + Q
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQ 832

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +R    + E   +  +   ++   ++E  +
Sbjct: 833 QREAVVNDETPGNAIHTEVIDSEENDEDGR 862


>gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 839

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/900 (38%), Positives = 511/900 (56%), Gaps = 90/900 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L  + ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN + D +A    +ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D ++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNADDYLLSLNVVR-------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                +  ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 720 ---------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 757 DRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLAI 816


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/856 (44%), Positives = 550/856 (64%), Gaps = 28/856 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGDPPAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF PNYD S +EP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+A+I+NP+  +  LM  + GPDFPT  +I G  GI+ AY TGRG I +R  
Sbjct: 186 NLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGIINGAAGIREAYLTGRGRIYLRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E   G R+ I+V E+PYQVNKA +LEKIAELV+E ++  I+ LRDESD+ G R+VIE
Sbjct: 246 CQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGMRMVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG + +V+LN LY+ T +QS+F +NMVAL   +P    L  ++ AF+  R EVV RRT
Sbjct: 306 LRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGRPRLMNLRDLIAAFIDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL GLA+A+AN+DEV+ +I+ SP+P  A+  L+ R+W    + +L++ 
Sbjct: 366 LHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVVTELLER 425

Query: 434 IDDSSYTIGSD---------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D +  +   D         G   LS +Q +AIL+LRL RLTGL +D I  E  +L  +I
Sbjct: 426 ADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYRALLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL+  +RL+ +I+ EL++++++   PRRT I+   LD+  ED I  EDMVVTVSH
Sbjct: 486 ADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDMVVTVSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS YRAQRRGG+G+     ++ED++  L + +TH ++L FSS G VY  KV+
Sbjct: 546 EGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP+ S  ARG+  +N+L L +GERI  I+P  E + +    ++  AT  G V++  LS+
Sbjct: 606 ELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEA---HFIFMATASGTVKKVALSE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SGKIA++L   D ++ V     E D++L +  G+ V F  + +R    R + GV
Sbjct: 663 FERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRAMG-RTAAGV 721

Query: 725 RGISLAKGDQVISMAI-----VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RG++L +G +VI++ I     VL+   +   +   ++     RR   G     TS +N +
Sbjct: 722 RGMTLQEGRKVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSARNGA 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + E+        E  I+ +++ G   RT   +  + +R+ +G+    ++   ++ 
Sbjct: 782 VVGAALVED--------EDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEKVV 833

Query: 840 AL--VAVFPVNDNDQI 853
            +  +   P  + D++
Sbjct: 834 GMDRIGSLPGGEEDEL 849


>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 886

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/904 (43%), Positives = 559/904 (61%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELGNDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 906 AEST 909
            +ST
Sbjct: 821 EQST 824



 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--ADADYDERICYMKHMSAQ 761
             +R  ++ I     R + GVR I L     V ++A V     + + DE+    +  + Q
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQ 832

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +R    + E   +  +   ++   ++E  +
Sbjct: 833 QREAVVNDETPGNAIHTEVIDSEENDEDGR 862


>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
 gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
          Length = 824

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/883 (42%), Positives = 544/883 (61%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   K Y 
Sbjct: 16  EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYDGS +EP+VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L  +++ +E V+ RR
Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 376 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 423 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 469

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 470 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 529

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P     
Sbjct: 530 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 589

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E +    + ++   T+ G V++  L++F  I +SG
Sbjct: 590 AKGTAIVNLLAVEADERITAVIQVREFK---PDRFLFLGTRKGVVKKTPLAEFANIRKSG 646

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R    R + GVRGI+L+ G
Sbjct: 647 LRAVNLDEDDELIGVKFTDGENRIMLGTRHGKAITFPEDGVRSMG-RIARGVRGITLSDG 705

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I+                                                   
Sbjct: 706 DEVVAMDILKSG------------------------------------------------ 717

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G++V +  V  + +
Sbjct: 718 -----SEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGSVVGIRVVRGSQE 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++L++ +G +IR  V+EI + SR T+GV + + A+++RV S+ 
Sbjct: 771 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 813



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 120/314 (38%), Gaps = 21/314 (6%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-----IMPFPEDESSWNNLYV 648
            +      + ++L     QA     +  L+  + E+I       +    E +S   +   
Sbjct: 414 DIARTALMEGFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNK 473

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V A     + +N+L +        +         E+   +   +E+ ++  T      R 
Sbjct: 474 VLA-----IIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRI 528

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRL 764
           P+   R    R  VGV+G+   + D V  + I              R   +K        
Sbjct: 529 PLDTYR-RQRRGGVGVKGMGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESG 587

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +     I +L    + E   +  + +E K  ++F+   + KG  K+T   +F    +SG
Sbjct: 588 RAAKGTAIVNLLAVEADERITAVIQVREFK-PDRFLFLGTRKGVVKKTPLAEFANIRKSG 646

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +RA ++ + +E   L+ V   +  ++I+L +  G  I  P + +R   R  +GV   +
Sbjct: 647 --LRAVNLDEDDE---LIGVKFTDGENRIMLGTRHGKAITFPEDGVRSMGRIARGVRGIT 701

Query: 885 TAKDERVVSVERIR 898
            +  + VV+++ ++
Sbjct: 702 LSDGDEVVAMDILK 715



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           AD ++ +  +K+   + R   GD        +        SE   ++L  +E  ++T++ 
Sbjct: 469 ADRNKVLAIIKNELIEVRDKYGDERRTEITFD-------ASEMDIKDLIAEEDVVVTLTM 521

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             + KR     +R   R G G++     + + +  L+       + +I+  +++G    +
Sbjct: 522 SNYIKRIPLDTYRRQRRGGVGVKGMGTKETDIVSDLLITTT---HHEILFFTNRGRAFVL 578

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
              EI  + RA KG   V + +   DER+ +V ++RE
Sbjct: 579 KAYEIPESGRAAKGTAIVNLLAVEADERITAVIQVRE 615


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/889 (44%), Positives = 553/889 (62%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y 
Sbjct: 3   EDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RYTE
Sbjct: 63  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 123 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+R 
Sbjct: 183 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +VVI
Sbjct: 243 KAEIE-EHHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV RR
Sbjct: 302 ELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +            
Sbjct: 362 TKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   IL+
Sbjct: 410 --------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR+P
Sbjct: 456 DERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P    Q
Sbjct: 516 LDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQ 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + QGE++T ++P    + S +  YVV  TK G +++  + +F  I R+G
Sbjct: 576 AKGTAIVNLIQIAQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNG 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+++ +    E +I++ T  G  +RF    IR    R + GV  ISL + 
Sbjct: 633 IIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPMG-RVAKGVIAISLRED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M +V                                                   
Sbjct: 692 DEVVEMDLVHPG------------------------------------------------ 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL V+EKGFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  D+
Sbjct: 704 -----SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPEDE 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +++S  G LIR+ V+EI    R T+GV +      +RVVS  RI   E
Sbjct: 757 FMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           + ++  +    +++     E   ++L   E  ++T++  G+ KR     ++   R GKGI
Sbjct: 470 EIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
                 + +    +  +F    +D+++  ++KG +  +   +I    R  KG   V +  
Sbjct: 530 LGISTREDD---FVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQ 586

Query: 885 TAKDERVVSVERIRESEIV 903
            A+ E+V +V  +++S+ +
Sbjct: 587 IAQGEKVTAVIPLKKSQDI 605


>gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 826

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/916 (41%), Positives = 554/916 (60%), Gaps = 99/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID+      +  ++ +++I++GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S+R+G R+ IEL+R A+A+VILNQLY++T +Q  F V M+AL   +P    L+
Sbjct: 294 ITDLSDQSNREGMRICIELRRDANANVILNQLYKHTQMQDTFGVIMLALVNNEPRVMNLL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S   + A+ 
Sbjct: 354 DMLNHYLKHQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                              L+EVQ +AI+++RL  LTGL R+ +  
Sbjct: 414 GLIA--------------------------AFDLTEVQAQAIVDMRLRALTGLEREKLET 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+ R  LLG+IK+E++ ++D+    RRT I     D+  ED I R
Sbjct: 448 EYAELMKRIGELKAILADRKLLLGVIKEEIIVIRDKYGDERRTAIGFDEYDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+V+T++ LGY+KR+ +  +++Q RGGKG  G+   +ED++ DLF+ STH  V+FF++ 
Sbjct: 508 EDVVITMTKLGYIKRMTVDTFKSQNRGGKGIKGMQTLEEDYIEDLFMTSTHHYVMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT I+P  E        Y+  ATK G
Sbjct: 568 GRVYRLKAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPIKEY---VQGEYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++D+  + ++G  A+ L   DE++ V+    E DI+L TK GQC+RF    +R 
Sbjct: 625 LVKKTPITDYANVRKTGLAAITLREEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L   D+V+ M +                                   
Sbjct: 685 -TGRTSMGVRGMNLGDRDEVVGMQL----------------------------------- 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               + + +L VSEKG GKRT   +F   NR GKG++   +++ 
Sbjct: 709 ------------------NTQGEHLLIVSEKGMGKRTEMSEFTSQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  V+++++I++++ +G +IR+  N I +  R T GV + +   DE+V S+ 
Sbjct: 750 -KTGNVVGVKAVSEDNEIMIINTEGIIIRMECNSISVLGRITSGVKLINLHDDEKVASIA 808

Query: 896 RIRE--SEIVDEAEST 909
           ++RE  SE+ + AE T
Sbjct: 809 KVREASSELEENAEET 824


>gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 886

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/904 (43%), Positives = 559/904 (61%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 906 AEST 909
            +ST
Sbjct: 821 EQST 824



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--ADADYDERICYMKHMSAQ 761
             +R  ++ I     R + GVR I L     V ++A V     + + DE+    +  + Q
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQ 832

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +R    + E   +  +   ++   ++E  +
Sbjct: 833 QREAVVNDETPGNAIHTEVIDSEENDEDGR 862


>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
          Length = 886

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/904 (43%), Positives = 559/904 (61%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL R+ I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERNKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELGNDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 906 AEST 909
            +ST
Sbjct: 821 EQST 824



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--ADADYDERICYMKHMSAQ 761
             +R  ++ I     R + GVR I L     V ++A V     + + DE+    +  + Q
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQ 832

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +R    + E   +  +   ++   ++E  +
Sbjct: 833 QREAVVNDETPGNAIHTEVIDSEENDEDGR 862


>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
 gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
 gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A
 gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
          Length = 889

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
 gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
          Length = 830

 Score =  781 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/891 (42%), Positives = 550/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE       +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M ++  EWNK
Sbjct: 2   EETAVRHEEISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+S+R +L++GQGNFGSVDGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+QK AH +L+D+ K+TVD   NYD S  EP+VL +R P +L+NG  GIAVGMATN
Sbjct: 122 YTEVRMQKLAHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV D   A+IDNPD+ ++ALM+ + GPDFPT  +I G  GI   YATGRG I 
Sbjct: 182 IPPHNLSEVADAITALIDNPDMSVEALMQHVPGPDFPTCGIIHGTDGIAEGYATGRGKIR 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG   +EK   D  E IVV E+PYQVNKA ++EK+AELV++K I  I  +RDESD++G 
Sbjct: 242 VRGRVFVEKGKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I LKR   ADV++NQLY++T L++ F +NM+A+   +PE  TL  IL+ F+  R+E+
Sbjct: 302 RIAIGLKRNQFADVVINQLYKHTQLENTFGINMLAVVNNRPELLTLKEILEYFILHRKEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L KA +RAH+L GL IA+ NLDEVV +IR S +P  AR  LM++        
Sbjct: 362 IVRRTRFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q +AIL++RL +LTGL R+ I  E      +I    
Sbjct: 414 ------------------FGLTQIQAQAILDMRLQKLTGLEREKIIEEYKETLKQIAWFN 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S   +L +IK+EL  +K E    RRT+I+    ++  ED I RE+MVVTVS  GY+
Sbjct: 456 EILGSERIVLDLIKKELADLKAEFGDERRTQIMGQKKEILLEDMIAREEMVVTVSRAGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+++YR QRRGG+G++ +  R++DFV  LF+ S+H + LFF++ G V+  KV+ +P 
Sbjct: 516 KRNPITLYRKQRRGGRGKTAMGTREDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               +RG A++N+L+ N+GE + T++  PE       L+V+ AT+ G V++  + D+ + 
Sbjct: 576 AGRASRGTAIVNLLNFNEGEDLATVLSVPE---FSPGLFVLMATRKGMVKKTDIMDYSRP 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+ L   DE+++V       ++ L ++ G+ VRF  S +R    R + GV+G++
Sbjct: 633 RSGGLIALGLADGDELIAVRITDGSWNVFLGSQNGKSVRFLESDVRPMG-RLARGVKGMT 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V+ M                                                  
Sbjct: 692 LEKDDHVVGM-------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E+      ++T++E G+GKRT   ++ ++ R GKG+     +K N  G +VA+  V 
Sbjct: 702 ---EVLSHGNTLMTITENGYGKRTEIDEYPVNRRGGKGVITIKTTKRN--GKVVAILLVE 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++D++++++D+G LIR+PV  + + SR T+GV +    + E V    R+ E
Sbjct: 757 NDDELMIMTDRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETVTGAARLAE 807


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/895 (41%), Positives = 545/895 (60%), Gaps = 86/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE     R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR+G R
Sbjct: 242 VRAKSEIE-EENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDE--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 412 -----------------FNLSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LLG+IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +      + Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTITD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R    R + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHMG-RTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +  +                                            
Sbjct: 691 KDDDIAVCMDIAVDEE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   +++I +R G G+    +S+  + G LV       
Sbjct: 707 ---------ELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +D+++L++  G  IR+ V++I   SRA  GV +  T ++E++V++ +I +S+  D
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDED 810


>gi|297543508|ref|YP_003675810.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/889 (44%), Positives = 553/889 (62%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y 
Sbjct: 3   EDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RYTE
Sbjct: 63  KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 123 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+R 
Sbjct: 183 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +VVI
Sbjct: 243 KAEIE-EHHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV RR
Sbjct: 302 ELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +            
Sbjct: 362 TKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   IL+
Sbjct: 410 --------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR+P
Sbjct: 456 DERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P    Q
Sbjct: 516 LDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQ 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + QGE++T ++P    + S +  YVV  TK G +++  + +F  I R+G
Sbjct: 576 AKGTAIVNLIQIGQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNG 632

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+++ +    E +I++ T  G  +RF    IR    R + GV  ISL + 
Sbjct: 633 IIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPMG-RVAKGVIAISLRED 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ M +V                                                   
Sbjct: 692 DEVVEMDLVHPG------------------------------------------------ 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL V+EKGFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  D+
Sbjct: 704 -----SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPEDE 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +++S  G LIR+ V+EI    R T+GV +      +RVVS  RI   E
Sbjct: 757 FMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           + ++  +    +++     E   ++L   E  ++T++  G+ KR     ++   R GKGI
Sbjct: 470 EIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
                 + +    +  +F    +D+++  ++KG +  +   +I    R  KG   V +  
Sbjct: 530 LGISTREDD---FVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQ 586

Query: 885 TAKDERVVSVERIRESEIV 903
             + E+V +V  +++S+ +
Sbjct: 587 IGQGEKVTAVIPLKKSQDI 605


>gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8]
          Length = 888

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/917 (40%), Positives = 554/917 (60%), Gaps = 58/917 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K
Sbjct: 3   DSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEM 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  H
Sbjct: 123 KMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG 
Sbjct: 183 NLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G 
Sbjct: 243 YHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EV
Sbjct: 303 RVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ + 
Sbjct: 363 VTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++D     S                 I +     LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I
Sbjct: 483 TGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F+
Sbjct: 543 PEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT 
Sbjct: 603 NTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLKD--ENSFVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG+ +                                    + + E + 
Sbjct: 721 RAMS-RVAKGVRGMRV-------------------------------NLLATTDEEELLD 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
              ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 749 EDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +   D       V   +  G VKRV LS + A  R G G   + + + D +  + I    
Sbjct: 643 LPVNDLKDENSFVFFATASGTVKRVALSQF-ANLRAG-GLRAIDLAEGDTLIGVAITDGE 700

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGERIT-----------TI 633
             ++ FS+ G   + K   +   S  A+G     +N+L+    E +             +
Sbjct: 701 QEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETC 690
                   +     ++ A ++G  +R  + D+    R GK  IA+K      +++     
Sbjct: 761 SRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAV 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           T E D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H D + +E
Sbjct: 821 TGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEIEE 879

Query: 751 RICY 754
               
Sbjct: 880 SEVL 883


>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
 gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
          Length = 882

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/903 (41%), Positives = 541/903 (59%), Gaps = 45/903 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL       +L D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+VDG VA+I NP+I    LM  I GPDFPTGA ILGR+GI+ AY TGRGSI +R
Sbjct: 185 PHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR+G
Sbjct: 245 GVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A   V+LN LY+ T LQ+ F  NM+AL   KPE  TL   L  F+ FR +
Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKRYLHVFLDFRID 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y   KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL++R       
Sbjct: 365 TIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AIL+++L RLT L    I  E   L  +I + 
Sbjct: 418 -------------------FGLSEPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L I++QE   +K    TPRRT I     ++ED D I  E  ++ ++  GY
Sbjct: 459 NDILNRRERILEIVEQEAQEIKQRHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D V        H S++FF+  G  Y  K +++P
Sbjct: 519 IKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           IGS  ARG  ++ +L + + E+IT+++   E     N+ Y+V  TK G +++  LS F  
Sbjct: 579 IGSRIARGVPIVQMLPIPRDEKITSLVAVGE---FSNDEYLVMLTKGGYIKKTALSAFNN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  DE+  V +   ++ +++ ++LG  + F     ++   GR + GV+ 
Sbjct: 636 IRSNGIIAISLNEGDELRWVRSAKVDDSVIIGSRLGMAIHFHTDDKQLRPLGRATRGVKA 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++I M I+            ++     +      + EE  +   +   +    
Sbjct: 696 MKLKPDDELIGMDIL----------PSFIVASIPKLGGEETEIEEEENTTVEEVDDTESE 745

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E    E++     IL ++ +G+GKR     FR+ NR+GKGI AT          +VA+  
Sbjct: 746 EIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVALQV 805

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V++ D+++L++ +G +IR  ++ I   SR   GV +    K++ + +V  +  S   D+ 
Sbjct: 806 VHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGEGDDT 865

Query: 907 EST 909
           E  
Sbjct: 866 EVD 868


>gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
 gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
          Length = 802

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/886 (42%), Positives = 543/886 (61%), Gaps = 86/886 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + IT+EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  ++ + K 
Sbjct: 3   KVIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+ +YHPHG+A +YDAL R+AQD++ R  L++G GNFGS+DGD PAA RYTE R
Sbjct: 63  AYIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L D+ KDTVDF PNYDG+ QEP VL +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 123 LSRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG +A+IDNPD+ L+ LM  + GPDFPTG +ILGR GI+ AYATGRG IV+RG +
Sbjct: 183 LGEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIILGREGIRTAYATGRGGIVVRGKA 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+  G+R  IV+TEIPYQVNKA +LE+IAELV+EKR+  +ADLRDESDR G RVV+EL
Sbjct: 243 TIER-KGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A   VILN+LY++T L+  F V M+AL   +PE  +L  +++ ++  ++EVVVRR +
Sbjct: 302 KRDADPQVILNRLYKHTQLEETFGVIMLALVNGQPEVLSLKEMMRHYLNHQKEVVVRRCQ 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A+ R  V+ GL +AV N+D VV++I+ +P+  TA+  L+                
Sbjct: 362 YELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLIS--------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T  L+E Q +AIL++RL RLT L R+ +  EL  L  +I     +L+  
Sbjct: 407 -----------TFGLTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +++ GI+K+EL ++K+    PRRT IV+  +    ED I  E +VV +SH GY+KR   S
Sbjct: 456 AKVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKS 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q RGG+G +G+ ++D DFV  L++ +TH  +LFF+S G V++ KV+ +P      R
Sbjct: 516 LYRSQHRGGRGVTGLKLKDGDFVRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGR 575

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G AL N+L L+  E++T I+P  +      + YV+  T+ G V++  L +   I R G  
Sbjct: 576 GTALPNLLQLSPEEQVTAIIPVAD---FSEDKYVLLVTRQGVVKKLPLGELANIRRVGLN 632

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE+++      E ++LL T+ G+ +RF  + +R    R + GVRG+ L  GD+
Sbjct: 633 AISLDPGDELVAAALPGPEEEVLLVTEGGKAIRFRAAEVRPMG-RAARGVRGMKLRPGDR 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +A++                                                     
Sbjct: 692 VAGLAVLD---------------------------------------------------G 700

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ++T    G  KR  + DF +  R G G+ A  VSK +  G +V V  V D ++I+
Sbjct: 701 AGEVLLVTAGGYG--KRVKTADFPLQGRGGMGVTALAVSKTS--GPVVGVEVVRDEEEIL 756

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L S  G L R+ V E+ +  R  +GVV+     ++R+V++ +I E 
Sbjct: 757 LASAAGWLTRLKVKEVPVMGRQARGVVLMRLQPEDRLVALAKIGED 802


>gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104]
 gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104]
          Length = 839

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/900 (38%), Positives = 512/900 (56%), Gaps = 90/900 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN + D +A    +ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D ++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNADDYLLSLNVVR-------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                +  ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 720 ---------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 757 DRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLAI 816


>gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
 gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
          Length = 853

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/906 (39%), Positives = 543/906 (59%), Gaps = 84/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I+ V+++  M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+     ++DNPD  +  LME++ GPDFPTG +++G++GI+ AY TGR
Sbjct: 181 MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I++R    I+     +++I+VTE+PY VNKA ++E+IA L R+K I  I D+ DESDR
Sbjct: 241 GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+++R ASA VILN LY+ T +Q+ F  NM+A+    P+  +L  IL  ++  +
Sbjct: 301 EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+V+ RRT++ L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+ +LM       
Sbjct: 361 EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDN----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL R+ I +E   L   I 
Sbjct: 416 ---------------------YGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  +IL+S+ R+  II +EL+ ++ +    RRT + V  +L +EDED I  E++ VT++H
Sbjct: 455 DYKEILASKDRINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P + +++Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPTTEFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L +N GE+I  ++    D S+ +N Y+ F T  G V+R  + +
Sbjct: 575 EIPEYGRTAKGIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE++ V       +I++ T  G  V F  + +R    R + GV
Sbjct: 634 FANIRSNGLKAITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSMG-RTASGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D VI   ++                                           
Sbjct: 693 RGIRLRDDDFVIGFDVLKP----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +  ++EKG+GK+T + D+ I  R GKGI+  +V++ N  G L  +
Sbjct: 712 ------------DSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  + I++++++G +IR  +  +    RAT GV +     D +V ++ ++     VD
Sbjct: 758 TTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVD 817

Query: 905 EAESTE 910
           E  +T+
Sbjct: 818 ETVATD 823



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 16/245 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR P+  + A  R   G   + ++D+D +  + I   H +++  +  G+     
Sbjct: 621 TVKGVVKRTPVQEF-ANIRS-NGLKAITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFD 678

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L   + +        D +      V   T+ G  ++   
Sbjct: 679 ETTVRSMGRTASG---VRGIRLRDDDFVIGFDVLKPDSN------VFIITEKGYGKQTPA 729

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A   +    +  + T   + DI++ T  G  +RF I+ +    GR
Sbjct: 730 ADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVMTNQGVMIRFNIATVSQ-TGR 788

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            ++GVR + L    QV +MA V   + + DE +       A     + + +  T+     
Sbjct: 789 ATLGVRLMRLGDDGQVATMAKV-DPEPEVDETVATDATTEAPVDDQTVNADATTTEPTTD 847

Query: 780 SVEGN 784
           S + N
Sbjct: 848 SNDSN 852


>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
 gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
          Length = 889

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/900 (41%), Positives = 547/900 (60%), Gaps = 86/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE     R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR+G R
Sbjct: 242 VRAKSEIE-EENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDE--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 412 -----------------FNLSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LLG+IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +      + Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTVTD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R    R + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHMG-RTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +  +                                            
Sbjct: 691 KDDDIAVCMDIAVDEE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   +++I +R G G+    +S+  + G LV       
Sbjct: 707 ---------ELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D+++L++  G  IR+ V++I   SRA  GV +  T ++E++V++ +I +S+  D  E+ 
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDEDLEENE 815


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/900 (42%), Positives = 546/900 (60%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NEGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GIK AY TGRG +VIR
Sbjct: 183 PHNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKRAYETGRGKVVIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDRQG R+V
Sbjct: 243 SKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+A+V+LNQLY++T +Q  F + M+AL   +P   +L  +LK ++ F+EEV+ R
Sbjct: 303 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  LM +           
Sbjct: 363 RTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL+++L RLTGL R+ I  E   L   IK   +IL
Sbjct: 412 ---------------FNLSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
           S++  LL IIK EL  +K +    RRT IV G   D++ ED I  +D+V+T++H GY+KR
Sbjct: 457 SNKDLLLKIIKDELNEIKIKYGDERRTEIVHGDGNDIDIEDLIEEKDVVITLTHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y AQRRGG+G   +  +++DFV  +   STH ++LFFS+ G VYK K +++P   
Sbjct: 517 LPVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  LIN+L L + E+I  ++   E +    + Y++  TK+G +++  L  +  I +
Sbjct: 577 RTAKGMNLINLLPLEKNEKIQNVIYLKEFK---PDRYLIMGTKNGLIKKTSLDQYSSIRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++SV   T + +I+  TK G  ++F  +  R    RN+ GV+ I+L 
Sbjct: 634 NGLNAINLRENDELISVRVTTGDCNIIYATKNGYAIKFDENDARPMG-RNATGVKAITLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                                                                   E   
Sbjct: 693 DD-----------------------------------------------------DEVVS 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   E+ +L VSE G+GKRT   ++ +  R GKG+    +S+  + G L+    V D 
Sbjct: 700 MEVASDERDLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVEDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D+++L++D G  IR+ V++I + SR   GV +  T ++E+VV++ ++  +E   E  S +
Sbjct: 758 DELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITEEEMEEGSND 817


>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A
 gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
          Length = 889

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 556/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A + L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
 gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
 gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
          Length = 889

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 111/280 (39%), Gaps = 17/280 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L     V ++A V     D           S    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNED----EQSTSTV 828

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              G  ++  ++ ND +    I  E     +  E   + V
Sbjct: 829 SEDGTEQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEV 868


>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
          Length = 887

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D++DED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLDDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K +  P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 64/153 (41%), Gaps = 9/153 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST-HTSVLFFSSL 595
           D V+ V+  GY KR P++ YR   RGGKG     + + +         T    ++  ++ 
Sbjct: 713 DEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNA 772

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---EDESSWNNLYVVFAT 652
           G + +  V  +      A+G   + ++ L   + ++T+       EDE++ +       +
Sbjct: 773 GVIIRLDVADISQNGRAAQG---VRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVS 829

Query: 653 KHGNVRRNK--LSDFIQINRSGKIAMKLDSRDE 683
           + G  ++ +  ++D    N      +  +  DE
Sbjct: 830 EDGTEQQREAVVNDETPGNAIHTEVIDSEENDE 862


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/888 (42%), Positives = 539/888 (60%), Gaps = 86/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I    I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NEGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD+L RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GIK AY TGRG ++IR
Sbjct: 183 PHNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKKAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+V
Sbjct: 243 SKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+A+V+LNQLY++T +Q  F + M+AL   +P   +L  +LK ++ F+EEV+ R
Sbjct: 303 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  L+ +           
Sbjct: 363 RTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL+++L RLTGL R+ I  E   L   IK   +IL
Sbjct: 412 ---------------FNLSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
           S +  LL IIK EL  +K +    RRT IV G   D++ ED I   D+V+T++H GY+KR
Sbjct: 457 SDKDLLLKIIKDELNEIKVKYGDERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y AQRRGG+G   +  +++DFV  +   STH ++LFFS+ G VYK K +++P   
Sbjct: 517 LPVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  L+N+L L + E+I  ++   E +    + Y++  TK+G +++  L  +  I +
Sbjct: 577 RTAKGMNLVNLLPLEKDEKIQNVIYLKEFK---PDRYLIMGTKNGLIKKTSLDKYSSIRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++SV   T + +I+  TK G  ++F  + +R    RN+ GV+ I+L 
Sbjct: 634 NGLNAINLRENDELISVRVTTGDCNIIYATKNGYAIKFDENDVRPMG-RNATGVKAITLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                                                                   E   
Sbjct: 693 DD-----------------------------------------------------DEVVS 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   E+ +L VSE G+GKRT   ++ +  R GKG+    +S+  + G L+    V D 
Sbjct: 700 MEVASDERDLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVEDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D+++L++D G  IR+ V++I + SR   GV +  T ++E+VV++ ++ 
Sbjct: 758 DELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTIAKVN 805


>gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 853

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/906 (38%), Positives = 543/906 (59%), Gaps = 84/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I+ V+++  M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+     ++DNPD  +  LME++ GPDFPTG +++G++GI+ AY TGR
Sbjct: 181 MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I++R    I+     +++I+VTE+PY VNKA ++E+IA L R+K I  I D+ DESDR
Sbjct: 241 GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+++R ASA VILN LY+ T +Q+ F  NM+A+    P+  +L  IL  ++  +
Sbjct: 301 EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+V+ RRT++ L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+ +LM       
Sbjct: 361 EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDN----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL R+ I +E   L   I 
Sbjct: 416 ---------------------YGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  +IL+S+ R+  II +EL+ ++ +    RRT + V  +L +EDED I  E++ VT++H
Sbjct: 455 DYKEILASKDRINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P + +++Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPTTEFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L +N GE+I  ++    D S+ +N Y+ F T  G V+R  + +
Sbjct: 575 EIPEYGRTAKGIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE++ V       ++++ T  G  V F  + +R    R + GV
Sbjct: 634 FANIRSNGLKAITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSMG-RTASGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D VI   ++                                           
Sbjct: 693 RGIRLRDDDFVIGFDVLKP----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +  ++EKG+GK+T + D+ I  R GKGI+  +V++ N  G L  +
Sbjct: 712 ------------DSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  + I++++++G +IR  +  +    RAT GV +     D +V ++ ++     VD
Sbjct: 758 TTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVD 817

Query: 905 EAESTE 910
           E  +T+
Sbjct: 818 ETVATD 823



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 16/245 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR P+  + A  R   G   + ++D+D +  + I   H +V+  +  G+     
Sbjct: 621 TVKGVVKRTPVQEF-ANIRS-NGLKAITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFD 678

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L   + +        D +      V   T+ G  ++   
Sbjct: 679 ETTVRSMGRTASG---VRGIRLRDDDFVIGFDVLKPDSN------VFIITEKGYGKQTPA 729

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A   +    +  + T   + DI++ T  G  +RF I+ +    GR
Sbjct: 730 ADYPIKGRGGKGIKTANVTEKNGHLAGLTTVDGQEDIMVMTNQGVMIRFNIATVSQ-TGR 788

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            ++GVR + L    QV +MA V   + + DE +       A     + + +  T+     
Sbjct: 789 ATLGVRLMRLGDDGQVATMAKV-DPEPEVDETVATDATTEAPVDDQTVNADATTTEPTTD 847

Query: 780 SVEGN 784
           S + N
Sbjct: 848 SNDSN 852


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 544/905 (60%), Gaps = 86/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +   + +  V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+
Sbjct: 1   MGGGDGGRRNMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             N+   K A+I+G+VMGKYHPHG++AIYD+L RMAQ +++R  L++GQGNFGSVDGDPP
Sbjct: 61  APNRPTTKSAKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  LL+D+ K+TVDF+PNYD +  EP VL  R PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL E+++  + +I +P  +L  +ME ++GPDFPTG  ILGR GI +A+  GR
Sbjct: 181 MATNIPPHNLTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFILGRQGILDAFIRGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  + IEK   DREQI+VTEIPYQVNK+ ++E  + LV EK++  I D+RDESDR
Sbjct: 241 GQLKLRAKAAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V ELKRG  A+VILN LY++T LQ  F + M+++   +P    L+ ++K F+  R
Sbjct: 301 DGMRIVFELKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRELGLVDMIKHFIDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT+Y L KARDR H+L+G   A+ +LDEV+R+IR S +P+ AR  L+       
Sbjct: 361 IEVVRRRTEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLIT------ 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               T   S+ Q +AI+EL+L RLTG+ R  I +EL  +   I 
Sbjct: 415 --------------------TFQFSDKQAQAIIELQLQRLTGMERQKILDELGEIQRRIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E ++IL S   L  +I +EL  V+      RRT+I+E   ++  ED +  ED+ +TV+  
Sbjct: 455 EYVEILGSDKVLRDLIIKELKEVQKNYGDERRTQIIEDTGEIRLEDLVAVEDVAITVTRG 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  +  YR Q RGGKGR G+  R EDFV  L + STH+ +L F++ G VY  K + 
Sbjct: 515 GYLKRTSVDTYRRQTRGGKGRIGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  +   +GK L N+++L   E     +   +      N Y+V  TKHG +++++L++F
Sbjct: 575 IPDATTIGKGKHLTNLINLQGDEEAKAFLSVKD---FVANQYIVMVTKHGVIKKSELTEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 G IA+ LD  DE++  +    +N I L +  GQ +RF    +R    R + GVR
Sbjct: 632 DNPLSRGIIAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAMG-RQARGVR 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +SLA GD ++ M +V                                            
Sbjct: 691 AMSLADGDYLVGMEVV-------------------------------------------- 706

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     K+  IL+++E G+GKRT   D+R+++R GKG+     +  N+ G +V + 
Sbjct: 707 ---------EKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTT--NKTGRVVGIL 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-D 904
            V ++ ++++VS  G +IR+  + IR A R+T+GV + +   D++V +   I ES++V D
Sbjct: 756 SVKEDSELMIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDKVAAASVIPESDVVPD 815

Query: 905 EAEST 909
           + + T
Sbjct: 816 DGQET 820



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 103/237 (43%), Gaps = 15/237 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E           V    +V V+  G +K+  L+ +       +G   V + + D +    
Sbjct: 597 EEAKAFLSVKDFVANQYIVMVTKHGVIKKSELTEFD--NPLSRGIIAVSLDEGDELIGAK 654

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      +   S  G   + +   +     QARG   +  +SL  G+ +  +      E 
Sbjct: 655 ITMGDNYIFLGSHEGQAIRFREEDVRAMGRQARG---VRAMSLADGDYLVGM------EV 705

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
              +  ++   ++G  +R  L D+   +R GK  + + + ++   ++ + +  +++++++
Sbjct: 706 VEKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTTNKTGRVVGILSVKEDSELMI 765

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            ++ G+ +R   S IR  AGR++ GVR ++L   D+V + +++  +D   D+    +
Sbjct: 766 VSQNGKMIRIESSTIRQ-AGRSTQGVRLVNLEPDDKVAAASVIPESDVVPDDGQETL 821


>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
 gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
          Length = 894

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/902 (42%), Positives = 551/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG + +  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIPYQVNKA M+EKIAELVR+K++  I DLRDE+  R G 
Sbjct: 243 MRARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A+VILN LY+ T LQ+ F  NM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  +K+     RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 RILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  Y++FATK+G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVVNAIELANDESISTMIAVNDLESEGN--YLIFATKNGIVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     + DIL+ T     +RF  +++R    R + GV+GI
Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+ + +      D                                        
Sbjct: 694 TLREGDTVVGLDVAHSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     ++ V +V +++     DE  
Sbjct: 761 TGEEDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDEQS 820

Query: 908 ST 909
             
Sbjct: 821 EA 822


>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
 gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
          Length = 820

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/902 (44%), Positives = 561/902 (62%), Gaps = 87/902 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             ++ +  ++I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL GM +MG+  N+ 
Sbjct: 2   PPDERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+I GE+MG YHPHG++AIYD L RMAQ++++R +L++GQGN+GS+DGD  AA RY
Sbjct: 62  YRKSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL D+ K+TVDF PNYD S  EP+VL +R PN+LVNG GGIAVG ATNI
Sbjct: 122 TEARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV++G + +++NP++ +  LM+ I GPDFPT   I G +GIK+AY TGRG + +
Sbjct: 182 PTHNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGTSGIKDAYETGRGLLTV 241

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE     DRE++++TEIPYQVNK+ ++EKIA+L +E R+  I+D+RDESDR+G R
Sbjct: 242 RAKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR     V+LN LY+++ LQ+ F VNM+AL   +PE   L  IL+AFV  R EVV
Sbjct: 302 VVIELKRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNNRPEVLNLKRILEAFVEHRREVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT Y L KA +RAH+L GL IA+ NLD V+ +IR S +P+ AR  LMQ+         
Sbjct: 362 VRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AILE+RL RLT L RD +  E   +   I+    
Sbjct: 413 -----------------FRLSEIQANAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L S + +  II+ EL  +K++    RRT+IV+   ++  ED I  E++VVT+SH GY+K
Sbjct: 456 VLGSEALVRKIIRDELTEIKEKYQDERRTKIVKEEAELTLEDLIAEEEVVVTISHAGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +++YRAQRRGGKG+  + +++EDFV  LF  STH S+LFF+  G VY  KV  +P  
Sbjct: 516 RNAVTLYRAQRRGGKGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+GKAL+N+L+L++ E++T  +P  E  +   + +V+  TK G +++ +LS +    
Sbjct: 576 SRAAKGKALVNLLALSKDEKVTATLPVKEYRA---DRFVIMGTKQGVIKKTELSAYSNPR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD+ D+++ V+    + +ILL TK G  +RF    +R    R + GVRGI+L
Sbjct: 633 QGGIIALSLDAGDKLIGVDLTDGQREILLGTKQGITIRFKEEDVRAMG-RTAHGVRGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VI M  +                                                
Sbjct: 692 EPGDEVIGMETITPDSTTA----------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTV+E G+GKRT   ++R+  R GKGI +   ++ N  G  V    V D
Sbjct: 711 ----------ILTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERN--GPAVGFLQVRD 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESE--IVDEA 906
            D+I+L++ +G ++R  V++IR   R T+GV +     D +RVV+V R+ E E  + +E 
Sbjct: 759 EDEIMLMAAQGKVLRCKVDDIREIGRNTQGVRLLDMDGDEDRVVAVVRLVEREEGVPEEG 818

Query: 907 ES 908
           ES
Sbjct: 819 ES 820


>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
 gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 850

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/901 (39%), Positives = 549/901 (60%), Gaps = 84/901 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + DE     +T+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV 
Sbjct: 6   NHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHELGVT 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQD+S R +L++G GNFGSVDGD  A
Sbjct: 66  PDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAA 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K A  +L D+ KDT+DF+PNYDG+ +EP VL +R+PN+LVNG  GIAVGM
Sbjct: 126 AMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIAVGM 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV+     ++ NPD     LME + GPDFPTG V++G++GI+ AY TG+G
Sbjct: 186 ATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYETGKG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +I++R    IE  +G +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR+
Sbjct: 246 TIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDRE 305

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+    P+  +L  IL  ++  + 
Sbjct: 306 GMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLEHQV 365

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRTKY LNKA+ RAH+L GL IA+ ++DE+++IIR S   + A+ +L++       
Sbjct: 366 EVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIE------- 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL R+ I  E N L  +I+E
Sbjct: 419 -------------------GFGLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEE 459

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
              IL+SR R+  II QELL ++++   PRRT + V  +L +EDED I  ED++++++H 
Sbjct: 460 YKAILASRERVNEIIYQELLEIQNKFGDPRRTELLVGEVLSLEDEDLIEEEDVIISLTHN 519

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P S ++AQ RGG+G  G+ + ++DFV  L   STH  +LFF+  G VY+ K + 
Sbjct: 520 GYIKRLPTSEFKAQNRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYE 579

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  +IN+L++   E+I  ++    D+++     + F T  G V+R  +SDF
Sbjct: 580 IPEYGRSAKGIPVINLLNIGNNEKIQAVINVS-DKNNDIEKDLFFVTLMGTVKRTPVSDF 638

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G  A+ L   D++ +V   +++ +I++ T  G  V F  + +R    R++ GVR
Sbjct: 639 ANIRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSMG-RSATGVR 697

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L + D V+   I+                                            
Sbjct: 698 GVRLRENDYVVGSDILKP------------------------------------------ 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +  +SE G+GKRT + ++ I  R GKGI+  ++++ N  G L  + 
Sbjct: 716 -----------DSEVFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKN--GPLAGLT 762

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN  + I+L++D+G +IR  V ++    RAT GV +       +V ++ ++ + +  ++
Sbjct: 763 TVNGEEDIMLITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQDDSED 822

Query: 906 A 906
            
Sbjct: 823 D 823


>gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
 gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
          Length = 900

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/911 (42%), Positives = 564/911 (61%), Gaps = 72/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WNK 
Sbjct: 3   ELAKEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDGS Q P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D C A +D+ +I ++ LM+ I+GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYGIINGRAGIIEAYRTGRGRIRI 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E+     R+ I+VTEIPYQ+NKA ++E+IAELV+EK I  I +LRDESD+   R
Sbjct: 243 RARATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKN-IR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++RG +ADV+LN LY  T ++S+F +NMVAL   +P    L G+++AFV  R+EVV
Sbjct: 302 IVIEVRRGENADVVLNNLYSQTQMESVFGINMVALVDGQPRLLNLRGVIEAFVRHRQEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAH+L GLA+A+AN+D V+ +I+ S +   A   L+ + W   ++  
Sbjct: 362 TRRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIA 421

Query: 430 LIDLIDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++   +          ++    +G  YLS+VQ R ILE+RL RLTGL  + +  E    
Sbjct: 422 MLERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEK 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E L IL+SR RL+ +I+ EL ++++     R+T IV   LD+ DED I  E +VV
Sbjct: 482 LEIIRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQLDINDEDLIPEETVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GY K  PL  Y+AQ RGG+G++   +++ED +  L +VSTH ++L F+S G V+ 
Sbjct: 542 TLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKVFW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P    QA+G+ ++N+LSL + E+IT I+P    +    + +V  AT +G V++ 
Sbjct: 602 LKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLRGYD---GDRFVFMATSNGTVKKV 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +    G IA++L+  + ++ V       DI+L +  G+ VRF  + +R    R 
Sbjct: 659 ALQEFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAMG-RT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG++L +   VI++ +                           D + +T+ +N   
Sbjct: 718 ARGVRGMNLPEDAAVIALIVPDP------------------------DAQILTACENGFG 753

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               +SE                             F    R GKG+ A   S+ N  G 
Sbjct: 754 KRTLVSE-----------------------------FPTKGRGGKGMIAIRTSERN--GK 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899
           L+    VND ++++L+SD+GT++R+  +E+ +  R T+GV +    + ER+V +E++ E 
Sbjct: 783 LMGAVQVNDGNEVMLISDQGTMVRIRADEVSLMGRDTQGVTLIRLNEGERLVGIEQVEEV 842

Query: 900 -SEIVDEAEST 909
               V+EA+++
Sbjct: 843 SDAAVEEAKAS 853



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 87/551 (15%), Positives = 191/551 (34%), Gaps = 47/551 (8%)

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQGYRVVIE 313
           IE     R+++V     Y++ KA     I E   V    I  + +L   S  +       
Sbjct: 350 IEAFVRHRQEVVTRRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERL 409

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEVVVR 371
           L +G     ++  L R     +     + A  G +      + +   +        +   
Sbjct: 410 LAQGWQPGNVIAMLERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGL 469

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            T+ L+ + +++  ++  L   +A+ + ++++IR   +  TA RE    +     +   +
Sbjct: 470 ETEKLIQEYQEKLEIIRELLAILASRERLMQVIR---DELTAIREGFADARKTEIVASQL 526

Query: 432 DLIDDSSYTI----------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           D+ D+               G   T  L   Q +        +     +++   E   + 
Sbjct: 527 DINDEDLIPEETVVVTLSNDGYAKTQPLDHYQAQH--RGGRGKAAAQVKEEDCIEHLLVV 584

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDMEDEDCI 533
                 L   S+       + Q   + +     P    IV        E +  +      
Sbjct: 585 STHDTILCFTSAGKVFWLKVYQIPQAGRQAKGRP----IVNLLSLGENEKITAILPLRGY 640

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +  V   +  G VK+V L  +   R   +G   + + + + +  + I   H  ++  S
Sbjct: 641 DGDRFVFMATSNGTVKKVALQEFSRPRS--QGLIALELEENNRLVGVAITEGHQDIMLLS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G   +     +      ARG   +  ++L +   +  ++    D        ++ A +
Sbjct: 699 SEGKAVRFDENEVRAMGRTARG---VRGMNLPEDAAVIALIVPDPDAQ------ILTACE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  +S+F    R GK  + + +     +++        N+++L +  G  VR   
Sbjct: 750 NGFGKRTLVSEFPTKGRGGKGMIAIRTSERNGKLMGAVQVNDGNEVMLISDQGTMVRIRA 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDT 769
             + +   R++ GV  I L +G++++ +  V   +DA  +E                   
Sbjct: 810 DEVSLMG-RDTQGVTLIRLNEGERLVGIEQVEEVSDAAVEEAKASGAKKLRATDFNGESV 868

Query: 770 EEITSLKNDSS 780
           E I   + D +
Sbjct: 869 EGIDDAEQDKT 879


>gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
          Length = 973

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/925 (41%), Positives = 552/925 (59%), Gaps = 37/925 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +TS++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A
Sbjct: 49  MTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 108

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G VMG YHPHG++AIYD + R+AQ +SLR L+++GQGNFGSVDGD PAA RYTE RL
Sbjct: 109 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNFGSVDGDSPAAMRYTESRL 168

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L D+  DTVDF PNYD S  EP VL AR PN+++NG  GIAVGMATNIP HNL
Sbjct: 169 TRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIINGSSGIAVGMATNIPPHNL 228

Query: 196 GEVV-DGCVAVIDNPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EVV      +  +P      L   ++ + GPDFPTG  + GRT I  AY TGRG  ++R
Sbjct: 229 TEVVSACISLLQKSPQDTTPDLELVLQHVLGPDFPTGGTLFGRTNIPQAYRTGRGRFMMR 288

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA--DLRDESDRQGYR 309
              HIE  SG R+ IVV EIPYQVNK+ ++E+IAELV E  I DIA  + RDESDR G R
Sbjct: 289 AKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGIITDIARDEFRDESDRDGMR 348

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI +KRGA   ++LNQL+++T +Q  FS+  +A++  +P+   L   ++AF+  R EVV
Sbjct: 349 IVIGIKRGAEHQIVLNQLHKHTQMQESFSMIFLAVHNGQPKELPLDKAIRAFLDHRIEVV 408

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS-------- 421
            RRT +LL KARDR  +L+GL IA+ +LD+V+RIIR S +   AR  L            
Sbjct: 409 RRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRADARENLFAYFSNRTITLR 468

Query: 422 --------WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                    + +       LI       G+  T+ L+  Q  AILEL+L RLT L  D++
Sbjct: 469 GTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQIDAILELQLYRLTQLSIDEL 528

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             EL  +   I E   IL+S ++L  +I  EL  ++D+   PRRT I++   ++  ED I
Sbjct: 529 LKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDPRRTIILDETAELGLEDLI 588

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + VTVS+ GY+KR P+S YR QRRGG GR G+  RDEDFV  L I STH  +L F+
Sbjct: 589 ADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDEDFVAQLIIESTHAYLLCFT 648

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY  K++ +P      +GKA+ +++ L  GE++ TI+P         N  ++FAT+
Sbjct: 649 NSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILPVKNLTEEGKN--ILFATR 706

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V++  L DF  +   G IA+ +D  DE+++    T  + + L T  G  +RF    +
Sbjct: 707 NGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDVVFLATHDGMAIRFNEQDL 766

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE--- 770
           R    R + G RGI+L KGD VI  A+    +A   +R    + +    +L    TE   
Sbjct: 767 RPMG-RPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERAEALGLLAQLEDAITEATD 825

Query: 771 -------EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                  + + +     V     ++  ++L L    ILTVSE GFGKRT    +R+ +R 
Sbjct: 826 ASLVLEGDPSDVAAAPPVSSAKLDKLDEKLGLTPCLILTVSENGFGKRTDVDRYRLQSRG 885

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G G+         + G + ++  V+D  +++L+S  G +IR+   ++R A R+T GV + 
Sbjct: 886 GTGVINMKTGT--KTGKVTSISLVDDTTEMMLISQFGKIIRIDTKQVRAAGRSTSGVKLL 943

Query: 884 STAKDERVVSVERIRESEIVDEAES 908
              +D++V +   I   +  ++ E+
Sbjct: 944 DLDQDDKVAAAMTIPPEDPKEKLEN 968


>gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 889

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DADDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 106/258 (41%), Gaps = 14/258 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T +G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNVG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ I     R + GVR I L   DQ +S    +  DAD +         +    
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLG-DDQFVSTVAKVKEDADDETNEDEQSTSTVSED 831

Query: 764 LISGDTEEITSLKNDSSV 781
                 E + + +   + 
Sbjct: 832 GTEQQREAVVNDETPGNA 849



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST-HTSVLFFSSL 595
           D V+ V+  GY KR P++ YR   RGGKG     + + +         T    ++  +++
Sbjct: 713 DEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNV 772

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFAT 652
           G + +  V  +      A+G   + ++ L   + ++T+    E   DE++ +       +
Sbjct: 773 GVIIRLDVADISQNGRAAQG---VRLIRLGDDQFVSTVAKVKEDADDETNEDEQSTSTVS 829

Query: 653 KHGNVRRNK--LSDFIQINRSGKIAMKLDSRDE 683
           + G  ++ +  ++D    N      +  +  DE
Sbjct: 830 EDGTEQQREAVVNDETPGNAIHTEVIDSEENDE 862


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/899 (41%), Positives = 550/899 (61%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  V I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   DEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +IDNPDI +  LM  I+GPDFPT  +I+G +GI++AY TGRG I++R
Sbjct: 183 PHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGTSGIRSAYETGRGKILVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I++TEIPYQVNK+ ++E +A+LV+ K+I  I+D+RDESDR G R+V
Sbjct: 243 AKAEIEEVK-GRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LNQLY++T +Q  F + M++L   +P+   L  +L  ++ F+EE+V R
Sbjct: 302 IELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNEPKVLNLKQMLVYYLQFQEEIVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA+ RAH+L GL IA+ ++DEV+ +IR S   E AR  LM             
Sbjct: 362 RTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 411 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIENEYNELMETIKHLKEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++  LL IIK EL+ ++D+    R+T I     D+  ED I  +++V+T++H GY+KR+
Sbjct: 456 ENKELLLKIIKDELIEIRDKYGDERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH ++LFF++ G VYK K + +P    
Sbjct: 516 SADTYSSQRRGGKGIQAMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N++ L   E+I  ++ F E +    + Y + AT+ G +++ K+S +  I ++
Sbjct: 576 TAKGTNLVNLIPLQGDEQIQAVISFKEVD---KDNYFIMATRCGLIKKTKISQYASIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V   T E++IL+ TK G  +RF    +R   GRN+ GVR I+L  
Sbjct: 633 GLNAINLKDEDELIGVRMTTGESEILIFTKNGYAIRFSEDDVRP-TGRNTTGVRAITLRT 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  ++M IV  +                                               
Sbjct: 692 GDIAVAMDIVDKS----------------------------------------------- 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 Q +L +SE GFGKRT   ++ I  R GKGI    V++  + G +V    V D D
Sbjct: 705 ------QDVLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTE--KTGLIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++L++     IR+ V+EI + +R T GV +  T +++RVV++ +I  S+   +  S +
Sbjct: 757 EMMLINSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSDDTSDNTSND 815


>gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74]
 gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74]
          Length = 838

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/910 (40%), Positives = 545/910 (59%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +     D E    I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM
Sbjct: 1   MADET--PDLESPSNIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV +NK + K ARI GEV+GKYHPHG++++YD + RMAQDWSLR  L++GQGNFGS+
Sbjct: 59  AELGVNYNKPHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL++ A  LL D+ K+TVDF+ N+D S QEP V+ A+ PN+L+NG  
Sbjct: 119 DGDSPAAMRYTEARLKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EVVDG +A ++N +I ++ LM+ ++ PDFPTGA I G  G+K+A
Sbjct: 179 GIAVGMATNMAPHNLTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIYGMEGVKSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG +V+R  + IE  +  + QI+VT++PY VNKA MLEK AEL+ +K+I  I   R
Sbjct: 239 FKTGRGRVVMRAHATIE-ENRGKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV +L++ A  +V+LN LY++T+LQS FS+N VAL   +P    L  ++K 
Sbjct: 298 DESDRDGLRVVYDLRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGRPMMLNLKDMMKY 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R EV+ RRT+Y L +A  RAH+L GL IA+ N+D V+ +IR S +PE AR  LM+R
Sbjct: 358 YVEHRFEVITRRTQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMER 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q +AILE+RL RLTGL RD ++ E + L
Sbjct: 418 --------------------------FSLSDLQAKAILEMRLQRLTGLERDKLQAEYDEL 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539
             EI +  +IL+S  R   +IK+EL  ++      RRT I   G  ++ D   I  EDMV
Sbjct: 452 MTEIADLKEILASEERKRQVIKEELTDIRARYGDERRTEINPLGDGNISDLSLIADEDMV 511

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH GY+KR P + YR+Q RGG G      ++EDF   LF  + H ++L F+  G +Y
Sbjct: 512 ITISHEGYIKRTPTTEYRSQGRGGVGAKAASTKEEDFTEHLFTATMHNTLLAFTQKGRMY 571

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657
              V+ LP GS  ++G+ L N +++   +++  ++   +  +E   NN Y+V  T+ G +
Sbjct: 572 WLPVYELPEGSRTSKGRPLANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTI 631

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  + +  ++G IA+ +D  D++L V     +NDI++ +  G+ VRF  S +R   
Sbjct: 632 KKTMLEAYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPMG 691

Query: 718 GRNSVGVRGISLAKG---DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            R + GVRGISL +    D VI M  +   DA                            
Sbjct: 692 -RTAAGVRGISLDEEDPTDHVIGMVCISSQDAQ--------------------------- 723

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L VS+ G+GKR+    +RI+NR  KG+    +++
Sbjct: 724 -------------------------LLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITE 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++G LVAV  V DND +++++  G  IR PV+ I +  R T+GV +    + + + SV
Sbjct: 759 --KVGRLVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSV 816

Query: 895 ERIRESEIVD 904
            +I++ E  +
Sbjct: 817 TKIKKEEGEE 826


>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
 gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
          Length = 886

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/904 (43%), Positives = 559/904 (61%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDE 905
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E   E+ ++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 906 AEST 909
            +ST
Sbjct: 821 EQST 824



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 115/270 (42%), Gaps = 15/270 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S  
Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELIAVRLTSGQ 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L +G+ +  +    +   + +  
Sbjct: 661 EDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----DVAHANSVD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--ADADYDERICYMKHMSAQ 761
             +R  ++ I     R + GVR I L     V ++A V     + + DE+    +  + Q
Sbjct: 774 VIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQ 832

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +R    + E   +  +   ++   ++E  +
Sbjct: 833 QREAVVNDETPGNAIHTEVIDSEENDEDGR 862


>gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1]
 gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7]
 gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1]
          Length = 888

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/917 (40%), Positives = 554/917 (60%), Gaps = 58/917 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K
Sbjct: 3   DSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEM 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  H
Sbjct: 123 KMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG 
Sbjct: 183 NLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G 
Sbjct: 243 YHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EV
Sbjct: 303 RVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ + 
Sbjct: 363 VTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++D     S                 I +     LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I
Sbjct: 483 TGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F+
Sbjct: 543 PEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT 
Sbjct: 603 NTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD--ENSFVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG+ +                                    + + E + 
Sbjct: 721 RAMS-RVAKGVRGMRV-------------------------------NLLATTDEEELLD 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
              ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 749 EDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +   D       V   +  G VKRV LS + A  R G G   + + + D +  + I    
Sbjct: 643 LPVNDLKDENSFVFFATASGTVKRVALSQF-ANLRAG-GLRAIDLAEGDTLIGVAITDGE 700

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGERIT-----------TI 633
             ++ FS+ G   + K   +   S  A+G     +N+L+    E +             +
Sbjct: 701 QEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETC 690
                   +     ++ A ++G  +R  + D+    R GK  IA+K      +++     
Sbjct: 761 SRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAV 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           T E D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H D + +E
Sbjct: 821 TGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEIEE 879

Query: 751 RICY 754
               
Sbjct: 880 SEVL 883


>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 894

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/902 (42%), Positives = 551/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   DLPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG + +  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIPYQVNKA M+EKIAELVR+K++  I DLRDE+  R G 
Sbjct: 243 MRARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A+VILN LY+ T LQ+ F  NM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  +K+     RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 RILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  Y++FATK+G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVVNAIELANDESISTMIAVNDLESEGN--YLIFATKNGIVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     + DIL+ T     +RF  +++R    R + GV+GI
Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+ + +      D                                        
Sbjct: 694 TLREGDTVVGLDVAHSESED---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     ++ V +V +++     DE  
Sbjct: 761 TGEEDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDEQS 820

Query: 908 ST 909
             
Sbjct: 821 EA 822


>gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c]
 gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c]
          Length = 897

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/925 (42%), Positives = 556/925 (60%), Gaps = 93/925 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H         + I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDHA--------QEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV
Sbjct: 53  NELKNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF PNYDG+   P VL  + PN+L+NG  
Sbjct: 113 DGDSAAAMRYTEIRMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ A
Sbjct: 173 GIAVGMATNIPPHNLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + IE+    +E IVV EIPYQVNKA ++EKIAELV+EK+I  I+ LR
Sbjct: 233 YRTGRGKIYMRARAEIEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALR 292

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+V+E+KR  S +V+LN LY  T +Q++F +NMVAL+  +P+ F L+ IL+A
Sbjct: 293 DESDKDGMRIVVEVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLEILQA 352

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P  A+  L  +
Sbjct: 353 FVLHRREVVTRRTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQ 412

Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            W   D+ D+++   + +             DG  YL+E Q +AIL+LRL +LTGL  + 
Sbjct: 413 GWALGDVSDMLERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEK 472

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++DE    RRT I     D++ ED 
Sbjct: 473 ILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDL 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE++VVT+S  GYVK   L+ Y +QRRGGKG+S   M++EDF+  L + +TH  +L F
Sbjct: 533 IEREEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCF 592

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G +Y  KV++LP+ S  ARG+ ++NIL L   ERIT I+P  E E      YV+ AT
Sbjct: 593 STRGRLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFEE---GKYVLMAT 649

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            +G V++  L  + +   +G IA+ L+  DE++ V+     +DI+L +  G+ VRF   A
Sbjct: 650 ANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKA 709

Query: 713 IRV-------------------FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
                                   GR + GVRGI L  G +V+S+ +             
Sbjct: 710 RDSETGAVKIDPETGEEILALRPMGRTATGVRGIRLQDGQKVVSLIVPQ----------- 758

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                        GD   +T+ +N       + +   +    +    + VSE        
Sbjct: 759 -------------GDGAILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSE-------- 797

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
                   R+GK + A  V+  +EI  +        +DQ  LV       R  V E+   
Sbjct: 798 --------RNGKVVGAVQVNDSDEIMLI--------SDQGTLV-------RTRVGEVSTV 834

Query: 874 SRATKGVVIFSTAKDERVVSVERIR 898
            R T+GV +  T +DE VV ++RI 
Sbjct: 835 GRNTQGVRLIRTGEDEHVVGLQRID 859


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/895 (41%), Positives = 548/895 (61%), Gaps = 87/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I  + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G    IDNP+I +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +++R
Sbjct: 183 PHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVILR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+V
Sbjct: 243 SRAEIEEDK-GKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+A+V+LNQLY++T +Q  F + M+AL   +P+  +L  +L+ ++ F+EEV+ R
Sbjct: 302 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+R+IR S     A+  LM +           
Sbjct: 362 RTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL+++L RLTGL R+ I  E   L   +K    IL
Sbjct: 411 ---------------FGLSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
           S +S LL IIK EL  +K +    R++ I++    D++ ED I  +D+V+T++H GY+KR
Sbjct: 456 SDKSLLLKIIKDELNEIKTKYGDERKSEIIQDEGNDIDIEDLIEEKDVVITLTHAGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y AQ+RGG+G   +  +++DFV  +   STH ++LFF++LG VY+ K +++P   
Sbjct: 516 LPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  LIN++ L++ E+I  ++   E +    + +++  TK G +++  L  +  I +
Sbjct: 576 RTAKGMNLINLIPLDKEEKIQNVIYLKEFKE---DTFLIMGTKKGLIKKTSLDKYASIRK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE++SV   T + +++  TK G  +RF  + +R    R + GV+ I+L 
Sbjct: 633 NGLNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPMG-RTATGVKAITLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+SM +                                                  
Sbjct: 692 EDDEVVSMEVASE----------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + +L VSE G+GKRT    + +  R GKG+    +S+  + G L+    V D 
Sbjct: 705 ------NRDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISE--KTGLLIGARFVEDK 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           D+++L++D G  IR+ V++I   SR   GV +  T  +E+VV++ ++  SEI D+
Sbjct: 757 DELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISEIEDD 811


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  779 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/885 (42%), Positives = 542/885 (61%), Gaps = 86/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +   +I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K
Sbjct: 5   DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+ KYHPHG++++YDA+ RMAQD+S R  L++G GNFGS+DGD  AA RYTE 
Sbjct: 65  SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  ++ D+ K+T+DF+PN+DG   EPVVL AR+P++LVNG  GIAVGMATNIP H
Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A ++NP+ID+  LME I+GPD PTGA+ILG  GI+NAY TG GSI++R  
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTKGIRNAYETGNGSIMMRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I +  G +  I+VTEIPYQVN+  ++EKIAELV+EKR+  I DLR+ES+R+G R+VIE
Sbjct: 245 CEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  +  V+LN L++ T LQ  + +NM+AL   +P+   L  I+ A++  + EV+VRRT
Sbjct: 305 LRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQPKVLNLKEIIAAYIKHQVEVIVRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA DRAH+L G  IA+ ++D ++ IIR S N E A   L+               
Sbjct: 365 QFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISE------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q +AILE+RL RLTGL RD I +E  +L   I +  DIL++
Sbjct: 412 -------------FSFSERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILAN 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+ GII+ EL  V  +    RRT IV G   D+EDED I  E +++T+++ GY+KR P
Sbjct: 459 EYRVHGIIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S YR+Q RGG+G  G+   D+D+V +L   STH  +LFF++ G VY++K + +P     
Sbjct: 519 ISTYRSQNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ + Q E I+ I+P  E      N ++ FAT+ G V+R  LS F  I  +G
Sbjct: 579 AKGLPIVNIIEIAQDEEISAIIPVKEFNE---NEFLFFATRTGVVKRTTLSAFGNIRTNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V   T  NDI++ +  G+ V F    +R    R + GVRGI+L +G
Sbjct: 636 LIALSLREDDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSMG-RTAAGVRGINLEEG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +  + M IV                                                   
Sbjct: 695 EVAVGMEIVTED------------------------------------------------ 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q IL VSEKGFGKRT   ++R ++R GKG++  +++  ++ G+LVA+  V   + 
Sbjct: 707 -----QEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINIT--DKNGSLVAMKTVTGEED 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++V++KG +IR P+++I    RAT+GV +     D+ V SV  +
Sbjct: 760 LLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVALV 804


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  779 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/902 (41%), Positives = 546/902 (60%), Gaps = 89/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V I+ EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y
Sbjct: 3   NEGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R  L+ G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L D+ K+TVDF PN+DG  QEP V+ AR+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G   +IDNP++ +  LM  I+GPDFPT  +ILG+ GI++AY TGRG +++R
Sbjct: 183 PHNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIILGKLGIRDAYETGRGKVIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTEIPYQVNKA ++E IA+LV++K+I  I+D+RDESDR+G R+V
Sbjct: 243 AKTDIEEEK-GRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +VILNQLY++T +Q  F + M+AL   KPE   L  IL  ++ F++EV+ R
Sbjct: 302 IELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNKPEVLNLKQILVHYLEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+ +IR S N E A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMN------------ 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         +  LSE Q +AIL++RL RLTGL R+ I NE   L   I    D+L
Sbjct: 410 --------------SFNLSEKQAQAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +    +L IIK+EL  +K++    RRT I +   ++  ED I  +++VVT++H GY+KR+
Sbjct: 456 AKEELVLKIIKEELTEIKNKYGDDRRTEIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y AQ+RGGKG   +  +++DFV  +F+ STH ++LFF++ G VYK K + LP    
Sbjct: 516 AADTYSAQKRGGKGIQAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  LIN+L +   E+I  ++ F E + +    Y +  T+ G +++ ++S +  I ++
Sbjct: 576 TAKGVNLINLLPIETNEKIQAVITFKEFDKT---NYFIMGTRQGLIKKTQVSQYSSIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V   T E++IL+ TK G  +RF    +R    R + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIGVRMTTGESEILVFTKNGYAIRFNERDVRPMG-RTATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M                                                     
Sbjct: 692 EDIAVAM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++  + Q +L +SE GFGKRT   ++    R GKG+    +++  + GA+V    V D D
Sbjct: 699 DIVCEGQDVLVISENGFGKRTPVSEYTPHRRGGKGMITYKITE--KTGAIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---EAES 908
           +++LV+     IR+ V+ I   SR   GV +  T ++++VV++ +I   E V+   E + 
Sbjct: 757 EMMLVNSSNVAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIAKINYDENVEKIAEEKD 816

Query: 909 TE 910
            E
Sbjct: 817 DE 818


>gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1]
          Length = 836

 Score =  779 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/920 (38%), Positives = 514/920 (55%), Gaps = 95/920 (10%)

Query: 1   MTEHIISS-----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+ I  +     D E    +  V I  EMQ SY+ YA++VI+GRA+P + DGLKPVHRR
Sbjct: 1   MTDTIDPAAPAAGDGEGGGRVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M + G   ++ +VKCAR+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI GQG
Sbjct: 61  VLYSMGENGFRPDRSFVKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTECRL   A  +L D+ ++TVDF  NYDG  QEPVVL +R PN+L
Sbjct: 121 NFGSRGNDPAAAMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV  G    ++NPD   D     LME I+GPDFPT  +I
Sbjct: 181 INGSSGIAVGMATNIPPHNLREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI++AY TGRGSI +R V  +E  +  R  +VVTE+PY VN   ++E IA +VR+ 
Sbjct: 241 VGRDGIESAYRTGRGSIRMRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDG 300

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +I  I+++ DE SDR G R+V+ LKR A A V+LN LY++T LQ  F  NM+++    P 
Sbjct: 301 KIAGISEIVDESSDRIGMRIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVDGVPR 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  I++ +V  + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   
Sbjct: 361 TLRLDQIVRHYVRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATV 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + AR  L+                            + + E+Q +AIL+++L RL  L R
Sbjct: 421 DVARAGLID--------------------------LLTVDEIQAQAILDMQLRRLAALER 454

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I +EL  +  EI +  DIL+   R   I++ EL  + ++    RRTRIV    D+ DE
Sbjct: 455 QKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHGDDRRTRIVGYDGDVTDE 514

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +L
Sbjct: 515 DLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVNHFFVCSTHDWML 574

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP  +  ARG+ L N+L+L   E I  +M   + ++     Y+V 
Sbjct: 575 FFTNRGRVYRLKAYELPEANRTARGQHLANLLALQPDEEIAQVMQIKDYQAR---PYLVL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT++G V++++L+DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  
Sbjct: 632 ATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVGAVLCSGDDDLLLVSAEGQSIRFTA 691

Query: 711 SAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +   +   GR + GV G+    GD+++++ ++                            
Sbjct: 692 TDDALRPMGRATSGVLGMRFNSGDKLLALGVIRP-------------------------- 725

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      + ++L  +  G+ KRT   D+ +  R GKG+  
Sbjct: 726 ---------------------------DTYLLVATTGGYAKRTPIEDYPVQGRGGKGVLT 758

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
               +    G LV    V  +D++  ++  G +IR    E+R A R TKGV + +  +  
Sbjct: 759 LQYDRR--RGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGESS 816

Query: 890 RVVSVERIRESEIVDEAEST 909
            +++V R  E    D  +  
Sbjct: 817 TLLAVARNAEETEEDPGQQA 836


>gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72]
 gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E]
          Length = 888

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/917 (41%), Positives = 557/917 (60%), Gaps = 58/917 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K
Sbjct: 3   DSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEM 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  H
Sbjct: 123 KMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG 
Sbjct: 183 NLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G 
Sbjct: 243 YHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EV
Sbjct: 303 RVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ + 
Sbjct: 363 VTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++D     S                 I +     LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I
Sbjct: 483 TGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F+
Sbjct: 543 PEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT 
Sbjct: 603 NTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD--ENSFVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG+        +++   +  +   DE    +    A  R++S       
Sbjct: 721 RAMS-RVAKGVRGMR-------VNLLATIDEEELLDEDGDEISDDFAVSRVVS------- 765

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                              +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 766 -----------------LVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +   D       V   +  G VKRV LS + A  R G G   + + + D +  + I    
Sbjct: 643 LPVNDLKDENSFVFFATASGTVKRVALSQF-ANLRAG-GLRAIDLAEGDTLIGVAITDGE 700

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGERIT-----------TI 633
             ++ FS+ G   + K   +   S  A+G     +N+L+    E +             +
Sbjct: 701 QEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATIDEEELLDEDGDEISDDFAV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETC 690
                   +     ++ A ++G  +R  + D+    R GK  IA+K      +++     
Sbjct: 761 SRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAV 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           T E D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H D + +E
Sbjct: 821 TGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEIEE 879

Query: 751 RICY 754
               
Sbjct: 880 SEVL 883


>gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX]
 gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX]
          Length = 848

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/927 (39%), Positives = 522/927 (56%), Gaps = 98/927 (10%)

Query: 1   MTEHIISSDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+   + +  +  G  I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+
Sbjct: 1   MTDVNTTPEAPDNTGGRIEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ Y KCAR+ G+VMG YHPHG++AIY+ L R+AQ W++R+ L++G GNFG
Sbjct: 61  AMYDSGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S   DP AA RYTEC+L   A  +L D+ K+TVDFRPNYDG  QEPVVL AR+PN+LVNG
Sbjct: 121 SPGNDPAAAMRYTECKLAPLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGR 234
             GIAVGMATNIP HNL EV +G    +D+PD   + L+    E I+GPDFPT   I+GR
Sbjct: 181 SSGIAVGMATNIPPHNLREVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIVGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI+  Y TGRGSI +R V  IE+    R+ +VVTE+PYQVN   +  KIAELV+E +I 
Sbjct: 241 RGIEETYRTGRGSITMRAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKIS 300

Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD++DES  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    
Sbjct: 301 GIADVKDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLR 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +++ +VA + EV+VRRT+YLL KA +RAH+L  L  A+  +DEV+ +IR S + + A
Sbjct: 361 LDQMIRHWVAHQIEVIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +  LM+                           + + +VQ RAIL+++L +L  L R  +
Sbjct: 421 KNGLME--------------------------LLAIDDVQARAILDMQLRKLAALERQQL 454

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E + L  +I +  +IL S  R   II+ EL  + ++    RRT IV    DM  ED I
Sbjct: 455 TSEYDELMAQIADYNEILESPERQRRIIRDELAEIVEKYGDDRRTEIVPYEGDMRMEDFI 514

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  GY KR  L  YRAQ+RGGKG  G  ++ +D V   F+ +TH  +LFF+
Sbjct: 515 AEEDIVVTITRGGYAKRTRLDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFT 574

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + LP  +  +RG  + N++     E I  ++   + +++    Y+V AT+
Sbjct: 575 NKGRVYRTKAYELPELARDSRGHHVANLVPFLPDEEIAQVLALRDYDAA---PYLVLATR 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++ KL++F     SG IA+ L   DE+++       +D+LL +   Q +RFP S  
Sbjct: 632 SGLVKKTKLAEFDSARSSGIIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDD 691

Query: 714 RVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            +   GR + GV G+  A+GD ++SM ++   +   D                       
Sbjct: 692 SLRPMGRATSGVIGMRFAEGDYLLSMDVIREGEGATD----------------------- 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                      +L  +E G+ KRT +  + +  R GKG+    +
Sbjct: 729 ---------------------------VLVATEGGYAKRTPADQYPVQKRGGKGVLTARI 761

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            +    G LV    V+  D+I+ ++  G +IR    EI+ + RAT GV +   +K   VV
Sbjct: 762 VES--RGKLVGALMVDPEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKGNHVV 819

Query: 893 SVERIRESEIVD---------EAESTE 910
           ++ R  E    D         +AE TE
Sbjct: 820 AIARNTEGMGDDAENGAHGSEDAEDTE 846


>gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
 gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
          Length = 848

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/919 (41%), Positives = 558/919 (60%), Gaps = 101/919 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MEDNIF-------DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +IDN      D  ++ L+EI++GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPER 351
           I DL D S R+G R+ I+L++ A+A+V+LNQLY++T LQ  F V M+ L       +P+ 
Sbjct: 294 ITDLNDHSSREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKV 353

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            TL  +LK ++A +E+VV RRTKY LNKA++RAH+L GL  A+ N+DEV+RIIR S + +
Sbjct: 354 LTLPEMLKHYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQ 413

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A++ELM R                            L++VQ +AI+++RL  LTGL R+
Sbjct: 414 VAKQELMDR--------------------------FELTDVQAQAIVDMRLRALTGLERE 447

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E   L  +I++   IL+ R+ LL +I++E+L++ ++    RRT I     D+  ED
Sbjct: 448 KLEAEYAELMEKIRKLKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAFDISMED 507

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE+ V+T++ LGY+KR+ +  +R+Q RGG+G  G+   D+D++ +L + +TH  V+F
Sbjct: 508 MIPRENTVITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMF 567

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + +P     ARG A+IN+L L  GERIT ++P  + E      Y++ A
Sbjct: 568 FTNTGRVYRLKAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFEE---GQYLMMA 624

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G V++  + D+  + + G  A+ L   DE++ V+    + DI+L TK GQC+RF  S
Sbjct: 625 TRKGLVKKTPIQDYANVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKES 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR S+GVRGI+L  GD+V++M +                               
Sbjct: 685 DVRS-TGRVSMGVRGINLLDGDEVVAMQL------------------------------- 712

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +  ++L VSE G GKRTS  +F   NR GKG++   
Sbjct: 713 ----------------------NTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYK 750

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++  + G ++    VN+ ++I++++ +G +IR+  ++I I  R T GV + + +    V
Sbjct: 751 ITE--KTGNVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTV 808

Query: 892 VSVERIRESEIVDEAESTE 910
            S  ++RE E    +E TE
Sbjct: 809 ASFAKVREKEEDKNSEKTE 827



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 110/280 (39%), Gaps = 23/280 (8%)

Query: 507 SVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            + +   T R T I+        E +  +           ++  +  G VK+ P+  Y  
Sbjct: 581 EIPEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGQYLMMATRKGLVKKTPIQDYAN 640

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R+   G + + +RD+D + ++        ++  +  G   + K   +      + G   
Sbjct: 641 VRK--IGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRSTGRVSMGVRG 698

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           IN+L    G+ +  +      + +    Y++  +++G  +R  +S+F   NR GK     
Sbjct: 699 INLL---DGDEVVAM------QLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCY 749

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              ++   ++  +   +EN+I++ T  G  +R   S I +   R + GV+ I+L+ G  V
Sbjct: 750 KITEKTGNVIGAKAVNEENEIMMITTEGIIIRLQCSDISILG-RITSGVKLINLSDGVTV 808

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            S A V   + D +         +      S +  + T  
Sbjct: 809 ASFAKVREKEEDKNSEKTEESSENVSTEENSNENTDSTEE 848


>gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii]
          Length = 829

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/913 (37%), Positives = 513/913 (56%), Gaps = 90/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     +DN + D +A    + E ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IHDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ KL+DF      G +A+ L   DE++    C+ + D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D ++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNADDYLLSLNVVR-------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                +  ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 720 ---------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  ++  ++++
Sbjct: 757 DRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLAI 816

Query: 895 ERIRESEIVDEAE 907
            R  E+   +  E
Sbjct: 817 ARNAEANADEAVE 829


>gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169]
 gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1]
          Length = 888

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/917 (41%), Positives = 557/917 (60%), Gaps = 58/917 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K
Sbjct: 3   DSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEM 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  H
Sbjct: 123 KMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG 
Sbjct: 183 NLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G 
Sbjct: 243 YHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EV
Sbjct: 303 RVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ + 
Sbjct: 363 VTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++D     S                 I +     LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I
Sbjct: 483 TGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F+
Sbjct: 543 PEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT 
Sbjct: 603 NTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD--ENSFVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG+        +++   +  +   DE    +    A  R++S       
Sbjct: 721 RAMS-RVAKGVRGMR-------VNLLTTIDEEELLDEDGDEVGDDFAVSRVVS------- 765

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                              +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 766 -----------------LVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIRESEIVDEAESTE 910
           +  +   +  DE E +E
Sbjct: 867 MACVEHDD--DEIEESE 881



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 19/244 (7%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +   D       V   +  G VKRV LS + A  R G G   + + + D +  + I    
Sbjct: 643 LPVNDLKDENSFVFFATASGTVKRVALSQF-ANLRAG-GLRAIDLAEGDTLIGVAITDGE 700

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGERIT-----------TI 633
             ++ FS+ G   + K   +   S  A+G     +N+L+    E +             +
Sbjct: 701 QEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLTTIDEEELLDEDGDEVGDDFAV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETC 690
                   +     ++ A ++G  +R  + D+    R GK  IA+K      +++     
Sbjct: 761 SRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAV 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           T E D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H D + +E
Sbjct: 821 TGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEHDDDEIEE 879

Query: 751 RICY 754
               
Sbjct: 880 SEVL 883


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/905 (41%), Positives = 554/905 (61%), Gaps = 91/905 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E  +  V I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+   K
Sbjct: 2   DFNEGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++DG + +IDNP+  +  LM  I GPDFPTGA I+G+ GI+ AY TG+G I+
Sbjct: 182 IPPHNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIMGKAGIRAAYETGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     R  I+VTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R
Sbjct: 242 VRANAEIE-EENGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+  V+LN LY++T LQ  F + M+AL   +P+   L  IL+ +V F++EV+
Sbjct: 301 IVIELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYVEFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM+R         
Sbjct: 361 TRRTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMER--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE+RL RLTGL R  I  E N L  +I+    
Sbjct: 412 -----------------FELSEKQSQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LL +IK+ELL +K+     R+++I + + +++ ED I  ED+V+T++H GY+K
Sbjct: 455 ILASEEKLLDVIKEELLEIKNRYSDERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y +QRRGGKG   +  +++DFV  L I STH+ VLFF++ G VYK + + +   
Sbjct: 515 RISADTYSSQRRGGKGIQAMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  LIN++++   E+I T++   +++      ++   TK G V++  LS+F  + 
Sbjct: 575 GRQAKGTNLINLIAIEPDEKIQTVLTVTDEKKEG---FLFMGTKQGIVKKTPLSEFKNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +I++ T+ G  V+F    +R    R + GV+ I+L
Sbjct: 632 KNGLIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSMG-RTASGVKAINL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D  + M I +  +                                            
Sbjct: 691 KEDDIAVCMDIAVDGE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE G+GKRT   ++++ NR G G+    +S+  + G L        
Sbjct: 707 ---------ELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISE--KTGKLAGATICKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVD 904
           +D+++L++  G  IR+ V +I + SR+  GV +  T +DE+VV++ +I     +E+E  D
Sbjct: 756 DDELMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIAKILSSDDQETESGD 815

Query: 905 EAEST 909
           EAES 
Sbjct: 816 EAESE 820


>gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489]
 gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489]
          Length = 851

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/902 (42%), Positives = 555/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D S +EP VL AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA IDN DI++D L+  I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE IVVTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKATFEEVQ-GRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN L++YT+LQ+ FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGRPQLLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  L++R           
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I +  DIL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R + IIK ELL VK++    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ANEERRMQIIKDELLEVKEKYGDERRSEINFAGGDLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + I L  K G+ +RF  S  R    RN+ GVRGI+L
Sbjct: 636 LNGINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESKTRPMG-RNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V + D D                                         
Sbjct: 695 ADDNDEVVGMVSVHNFDDD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+RI+NR GKG++   V+  ++ G LVA+  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVT--DKTGGLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D+D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ + E   + E 
Sbjct: 761 DSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDEEG 820

Query: 909 TE 910
            E
Sbjct: 821 LE 822


>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
          Length = 793

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/865 (42%), Positives = 533/865 (61%), Gaps = 86/865 (9%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +N++AL   +P+  +L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 301 QTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LD V+ +IR S   E AR  L+++                            L+E Q
Sbjct: 361 LDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQ 394

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E  SL   I E  DIL++ +R+L II++EL  +K+  +
Sbjct: 395 AQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEARVLEIIREELNEIKERFN 454

Query: 514 TPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT IV  GL  +EDED I RE++V+T++H GYVKR+P S YR+Q+RGGKG  G+   
Sbjct: 455 DERRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTN 514

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           ++DFV  L   STH ++LFFS+ G VY+ K + +P     A+G  +IN+L + +GE I  
Sbjct: 515 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 574

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P    +      Y+ F TK G  +R  LS F  I  +G IA+ L   DE+++V     
Sbjct: 575 IIPVSTFDEEQ---YLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDG 631

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I++ TK G  +RFP   +R    R + GV+GI+L   D V+ M I+           
Sbjct: 632 KKQIIIGTKNGLLIRFPEEDVRQMG-RTAAGVKGITLTDDDVVVGMEILEE--------- 681

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       +  +L V+E G+GKRT
Sbjct: 682 --------------------------------------------DSHVLIVTENGYGKRT 697

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
            + ++R+ +R GKG++   ++  N  G LV V      + +++++  G LIR+ +N+I  
Sbjct: 698 PASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATKGEEDLMIITASGVLIRMDINDIST 755

Query: 873 ASRATKGVVIFSTAKDERVVSVERI 897
             R T+GV +   +  E V +V  +
Sbjct: 756 TGRVTQGVRLIRMSDQEHVATVALV 780


>gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
 gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 884

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 540/903 (59%), Gaps = 43/903 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL       +L D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+VDG VAVI NP+I    LM  I GPDFPTGA ILGR+GI+ AY TGRGSI +R
Sbjct: 185 PHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR+G
Sbjct: 245 GVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A   V+LN LY+ T LQ+ F  NM+AL   KPE  TL   L  F+ FR  
Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGKPELLTLKRYLHVFLDFRIH 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y   KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL++R       
Sbjct: 365 TIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AIL+++L RLT L    I  E   L  +I + 
Sbjct: 418 -------------------FGLSEPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L I++QE + +K+   TPRRT I     ++ED D I  E  ++ ++  GY
Sbjct: 459 NDILNRRERILEIVEQEAIQIKERHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D V        H S+LFF+  G  Y  K +++P
Sbjct: 519 IKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           IGS  ARG  ++ +L + + E+IT+++   E     N+ Y+V  TK G +++  LS F  
Sbjct: 579 IGSRIARGVPIVQMLPIPRDEKITSLVAVGE---FTNDEYLVMLTKGGYIKKTALSAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  DE+  V +   ++ I++ ++LG  + F     ++   GR + GV+ 
Sbjct: 636 IRSNGLIAISLNEGDELRWVRSARVDDSIIIGSRLGMAIHFHTDDKQLRPLGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++I M I+                          + EE T+   D     +  
Sbjct: 696 MKLKPNDELIGMDILPS--------FIVATIPQLGGEEPEIEEEENTTAVEDVEDMDSSE 747

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E    E++     IL ++ +G+GKR     FR+ NR+GKGI AT          +VA+  
Sbjct: 748 ELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVALQV 807

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V++ D+++L++ +G +IR  ++ I   SR   GV +    K++ + +V  +  S   D+ 
Sbjct: 808 VHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGEGDDT 867

Query: 907 EST 909
           E  
Sbjct: 868 EVD 870


>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
 gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 849

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/895 (41%), Positives = 543/895 (60%), Gaps = 86/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  S+IE     R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR G R
Sbjct: 242 IRAKSNIE-EENGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  +V F++EV+
Sbjct: 301 IVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYVDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDE--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 412 -----------------FALSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LL +IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLEVIKNELLEIKAKYGDERRTSIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +      + Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEPDEKIQTVLTVTD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R    R + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHMG-RTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +  +                                            
Sbjct: 691 KGDDIAVCMDIAVDEE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   ++++ +R G G+    +S+  + G LV       
Sbjct: 707 ---------ELLVISENGFGKRTPVNEYKVQHRGGVGLITYKISE--KTGKLVGATICKL 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +D+++L++  G  IR+ V++I   SR+  GV +  T ++E++V++ +I + +  D
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEKIVAIAKILKGDDED 810


>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
 gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 853

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/893 (41%), Positives = 541/893 (60%), Gaps = 60/893 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I    + +E+  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 6   DSSRIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPF 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++A+YDAL RMAQD+S+R  LIEG GNFGS+D DPPAA RYT
Sbjct: 66  RKCARVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYT 125

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ      LL D+ ++TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 126 ECRLQALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA+I +P +    LM  I GPDFPTG  ILG+ GI+ AY TGRGS+ +
Sbjct: 186 PPHNLGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHILGQGGIEEAYTTGRGSMTL 245

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           R V+ IE         RE I++TE+PYQ NKAA++EKIAELV EK+I  IADLRDESDR 
Sbjct: 246 RAVATIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRD 305

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN LY+ T LQ  F  NM+A+   +P+  TL   L+ F+ FRE
Sbjct: 306 GIRVVIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGEPQLLTLKRSLEVFLRFRE 365

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL +A+ANLD V+++IR + +   AR++LMQ       
Sbjct: 366 EAIARRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQ------- 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  LSE Q  AIL+++L RLT L  + I  E   L  +I +
Sbjct: 419 -------------------TYALSEAQADAILQMQLRRLTALEAEKIEREHAELQRQIAD 459

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II++E+  +K +  TPRR+RIV+   ++ D D I  +  V+ V+  G
Sbjct: 460 YRDILAHRQRVLEIIEKEVTELKAKFATPRRSRIVQADGEISDIDLIANDKSVILVTQQG 519

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+  + AQ R G+GR G  ++++D V   F  + H  +LFFS  G VY    +++
Sbjct: 520 YIKRMPVDTFEAQSRDGRGRKGAEIKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQI 579

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS QARG  ++ +L + + E+IT+++   E      + Y+V  T+ G +++  L+ F 
Sbjct: 580 PSGSRQARGTPIVQLLPIPREEKITSVIAVQE---FSEDEYLVMLTRKGFIKKTPLAAFS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L+  D++  V    +++ I++ ++ G  + F  S  ++   GR + GV+
Sbjct: 637 HIRSNGLIAISLEEGDQLRWVRRTREQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVK 696

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L  GD+++ M I+  A A+                          +   D S E   
Sbjct: 697 SMNLRPGDELVGMDILPAAIAN-----------------------RFATPSEDDSGEIED 733

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           SEE       +  ++L ++  G+GKR     FR+ NR+G GI AT     +    L A+ 
Sbjct: 734 SEETVA--HSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNEDQLAALR 791

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN  D++++V+ +G +IR  V +I   SR+  GV +    +D+ +V+   + 
Sbjct: 792 IVNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDAIVTAAVLP 844



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 101/250 (40%), Gaps = 17/250 (6%)

Query: 669 NRSGKIAMKLDSRDEILS---VETCTQENDILLT--TKLGQCVRFPISAIRVFAGRNSVG 723
            R+     K + RD +L    V     +  I L          R  +      +   +  
Sbjct: 370 RRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQTYALSEAQADA 429

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND----- 778
           +  + L +   + +  I         +   Y   ++ ++R++    +E+T LK       
Sbjct: 430 ILQMQLRRLTALEAEKIEREHAELQRQIADYRDILAHRQRVLEIIEKEVTELKAKFATPR 489

Query: 779 -SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            S +     E    +L   ++ ++ V+++G+ KR     F   +R G+G +  ++ + + 
Sbjct: 490 RSRIVQADGEISDIDLIANDKSVILVTQQGYIKRMPVDTFEAQSRDGRGRKGAEIKEDD- 548

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
             A+   F  ND+D+I+  SD+G +  +   +I   SR  +G   V +    ++E++ SV
Sbjct: 549 --AVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGSRQARGTPIVQLLPIPREEKITSV 606

Query: 895 ERIRESEIVD 904
             ++E    +
Sbjct: 607 IAVQEFSEDE 616


>gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 845

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/923 (38%), Positives = 523/923 (56%), Gaps = 99/923 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +  + +     I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPPAPDH--DRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 59  FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL +R+PN+LVNGG 
Sbjct: 119 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  ++NP+   D L+      I+GPDFPT A+ILG +G
Sbjct: 179 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +R V  +E+ +  R  +VV+E+PYQVN   ++E IA LVR+ ++  I
Sbjct: 239 IEDAYRTGRGSVRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGI 298

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DES+ R G R+V+ +KR A A V+LN L+++T LQ  F VNM+AL    P    L 
Sbjct: 299 SDIADESNSRSGMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +V  + +V+VRRT+Y L K  +RAH+L GL  A+  LDEV+ +IR SP+ + AR 
Sbjct: 359 QIIRHYVKHQMDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARP 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+++L RL  L R  I +
Sbjct: 419 ALMT--------------------------LLDIDEIQAVAILDMQLRRLAALERQRIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + IEI +  DIL    R   II+ EL+++ D+    RRT+I+    D+ DE+ I  
Sbjct: 453 ELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDKYGDDRRTKIIGFSGDVTDEELIAV 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+++    E+I  ++     E +    Y+V ATK G
Sbjct: 573 GRVYRTKAYELPEANRNARGQHVANLMAFQPDEQIAQVIQIKNYEVA---PYLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ KL+DF      G IA+ L   DE++       E+D+LL +  GQ +RF  +   +
Sbjct: 630 LVKKTKLTDFDSNRSGGLIAINLREGDELVGAVLAAAEDDLLLVSAEGQSIRFHATDEAL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+    GD+++ +++V                                 
Sbjct: 690 RPMGRPTSGVMGMRFNDGDELLGISVVKEG------------------------------ 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  +F+L  ++ G+ KRT+  D+ +  R GKG+      +
Sbjct: 720 -----------------------KFLLVATDGGYSKRTAIEDYPVQGRGGKGVLTIQHDR 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V+  D++  ++  G +IR P  ++R A R TKGV + +  +   +++V
Sbjct: 757 --KRGRLVGALIVDAEDELYAITSSGGVIRTPAGDVRKAGRQTKGVRLMNLGEGTTLLAV 814

Query: 895 ERIRES-------EIVDEAESTE 910
            R  +        E  +  E+ E
Sbjct: 815 ARNADEPSDVANGEAPEAPEAGE 837


>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
          Length = 886

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/891 (43%), Positives = 551/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 597 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 652

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  +S   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 653 AVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 706 VAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 765

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERIC 753
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     + + DE+  
Sbjct: 766 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEENEDEQST 824

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
             +  + Q+R    + E   +  +   ++  +++E  +
Sbjct: 825 VSEDGTEQQREAVVNDETPGNAIHTEVIDSEVNDEDGR 862


>gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523]
          Length = 862

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/907 (42%), Positives = 564/907 (62%), Gaps = 69/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDN ++ ++ L+  I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNSELTIEDLIHYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QIVVTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I SD +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIER 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS  + L+ ++K+EL+ ++D     R++ I+E  LD+  ED I  E+MVVT+S
Sbjct: 486 IKYLIGILSDVNELIRVVKEELVEIRDNYGDERKSEIIESRLDLTREDLIAEENMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  AT+ G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATRLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ +    +++SM +                                           
Sbjct: 722 VTGMRIHPDQKIVSMLVTNPD--------------------------------------- 742

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V 
Sbjct: 743 -------------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVV 787

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S+ ++ + + V
Sbjct: 788 AVLVENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISL-KVVKQDDV 846

Query: 904 DEAESTE 910
           D  E  E
Sbjct: 847 DNGEDIE 853


>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 886

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/891 (43%), Positives = 551/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+A+IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 597 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 652

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  +S   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 653 AVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 706 VAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 765

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERIC 753
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     + + DE+  
Sbjct: 766 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEENEDEQST 824

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
             +  + Q+R    + E   +  +   ++  +++E  +
Sbjct: 825 VSEDGTEQQREAVVNDETPGNAIHTEVIDSEVNDEDGR 862


>gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec]
 gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec]
          Length = 837

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/915 (39%), Positives = 518/915 (56%), Gaps = 92/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPP---PGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYD L R+AQ WSLR  L++G GNFGS 
Sbjct: 58  YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 118 GNDPPAAMRYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +D+P+   + L+E    II+GPDFPT  +I+GR G
Sbjct: 178 GIAVGMATNIPPHNLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIVGRNG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E  +  R Q+VVTE+PYQVN   + EKIAELVR+ ++  I
Sbjct: 238 IEDAYRTGRGSIRMRAVVNVE-ENKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+RDE+  R G R+VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L 
Sbjct: 297 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ++  +V  + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + E AR 
Sbjct: 357 QMISYYVEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 417 QLMAR--------------------------FSLSEIQATAILDMQLRRLAFLERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I E   IL+S  R   II QEL  V ++    RRTR+V    DM  ED I R
Sbjct: 451 EAAELRAKIDELEAILASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMSVEDLIAR 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+ +Q ERI  +M   + +++    Y+V ATK G
Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDYQAA---PYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++  L+DF      G +A+ L   DE++S       +D+LL ++  Q +RF     ++
Sbjct: 628 LCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQL 687

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+   + D+++SM +V+                                
Sbjct: 688 RPMGRATSGVIGMRFDEADELLSMDVVVPE------------------------------ 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +  G+ KRT   ++ I  R GKG+    +  
Sbjct: 718 ---------------------SPADLLVATSGGYAKRTPLAEYPIQGRGGKGVLTAKI-- 754

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++  G LV    V  NDQ+  ++  G ++R    ++R A R T GV +       +VV V
Sbjct: 755 VSTRGGLVGALVVEPNDQLYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGV 814

Query: 895 ERIRESEIVDEAEST 909
            R  ++   D    T
Sbjct: 815 ARNADANDSDGDGET 829


>gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
 gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
          Length = 829

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/907 (40%), Positives = 554/907 (61%), Gaps = 86/907 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G+IV+R  ++IE     RE+IVV+E+PY VNKA +++KIA+L REK I  I  +RDESD
Sbjct: 241 KGNIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  
Sbjct: 301 QTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q     
Sbjct: 361 QEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q++AIL++RL RLTGL RD I  E   L  +I
Sbjct: 417 ----------------------FGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  DIL+   R+  II  ELL ++      RRT+I E   + +EDED I ++D+++T++
Sbjct: 455 ADYKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K 
Sbjct: 515 HNGYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S
Sbjct: 575 YEIPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + G
Sbjct: 632 EFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMG-RTAAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L   D V+   I+                                          
Sbjct: 691 VRGINLRDNDYVVGSDILEP---------------------------------------- 710

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  
Sbjct: 711 -------------DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   
Sbjct: 756 VTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDE 815

Query: 904 DEAESTE 910
           DE  + E
Sbjct: 816 DEEATDE 822


>gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
 gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
          Length = 839

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/918 (37%), Positives = 516/918 (56%), Gaps = 93/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D D +A +    E ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V++RRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARV 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATQNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ E D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNADDRLLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   ++ +  R GKG+      +
Sbjct: 722 -----------------------TYLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDR 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 R--RGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRESEIVDE--AESTE 910
            R  E E  DE  AE+T+
Sbjct: 817 ARNAE-ENADEAVAEATD 833



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 94/241 (39%), Gaps = 13/241 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           +V  +  G VK+  L+ + + R G  G   + +R ED +   
Sbjct: 606 EERIAQVIQIKSYEDAPYLVLATQNGLVKKSKLTDFDSNRSG--GIVAINLRGEDELVGA 663

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + S+   +L  S+ G   +       +  P  R  + +  +  N  +R+ ++    E  
Sbjct: 664 VLCSSEEDLLLVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVRE-- 720

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
                 Y++ AT  G  +R  + ++    R GK  + +        ++       ++++ 
Sbjct: 721 ----GTYLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELY 776

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T  G  +R     +R  AGR + GVR ++L +GD ++++A     +AD          
Sbjct: 777 AITSGGGVIRTAARQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEENADEAVAEATDTD 835

Query: 758 M 758
            
Sbjct: 836 E 836


>gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501]
 gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501]
          Length = 848

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/891 (42%), Positives = 549/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV     +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + R+AQDWS+R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ K+TVD + N+D S +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A ID+ DI ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIYGYDGVKEAFETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE IVVTEIPYQVNKA M++K  +L+ EK+I  IA +RDES+R+G R+V
Sbjct: 243 AKATFEEVQ-GRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+Y++LQS FSVN +AL G +PE   L  ++  FV  R +VVVR
Sbjct: 302 YVLKRDAIPNIVLNMLYKYSALQSSFSVNNIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +RAH+L GL IA  N+DEV+ IIR S N E AR  L++R           
Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSEVQ RAI+E+RL +LTGL +D +R+E   +   I++  DIL
Sbjct: 411 ---------------FELSEVQARAIVEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + IIK EL  V+D+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 AREERRMEIIKDELREVRDKYGDDRRSEINYAGGDLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  Y  +V+ +P GS 
Sbjct: 516 PLTEYKTQHRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   N+ +V+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ +   DE+L     T  + I L  K G+ +RF  S  R    R++ GVRGI+L
Sbjct: 636 QNGIIAIGIREGDELLEARLTTGSSQIFLGLKSGKAIRFEESKTRPMG-RSASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V   D D                                         
Sbjct: 695 ADDNDEVIGMVSVHDFDED----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   +SK  + G LVA+  V+
Sbjct: 714 -----------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISK--KTGGLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D+D +++++  G  IR+ V ++R   RAT+GV + +   ++ + +V ++ +
Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVAKVMK 811


>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
 gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
          Length = 884

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/894 (41%), Positives = 543/894 (60%), Gaps = 53/894 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   EERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+R  LI G GNFGS+D DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMRYTE 124

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL+      +L D+  +TV+F  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VDG VA+I NP+I    LM+ I GPDFPTGA ILGR+GI+ AY TG+GSI +R
Sbjct: 185 PHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKILGRSGIREAYTTGQGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        +RE I++T++PYQ NKAA++EKIAE+V +KRI  I+D+RDESDRQG
Sbjct: 245 GVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRQG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A   V+LN LY+ T LQS F  NM+AL   +PER TL   LK F+ FR E
Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPERLTLSRYLKVFLEFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA++R H+L GL IA+ NLD ++ +IR + +  TA++EL++R       
Sbjct: 365 TIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L    I+ E   L   I + 
Sbjct: 418 -------------------FELSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ E + +K+   +PRRT I     ++ED D I  E  ++ V+  GY
Sbjct: 459 QDILARRERILDIIESEAIELKERHGSPRRTEIEHTEGELEDTDLIANEKAIILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D +        H S+LFFS  G VY  K +++P
Sbjct: 519 IKRMPVNTFDAQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ARG  ++ +L + + ERIT+++P  E     ++ Y+V  TK G +++ +LS F  
Sbjct: 579 VASRTARGVPIVQMLPIPKQERITSVVPVSE---FSDDEYLVMLTKGGYIKKTELSAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L   DE+  V     ++ I++ ++LG  + F     ++   GR + GV+ 
Sbjct: 636 IRANGLIAISLGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L K D++ISM I+  A      ++                  E      +        
Sbjct: 696 MKLGKKDELISMDILPSAIVSSIAQL------------------ESEETDIEDEEVLETE 737

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E       +E  I+ ++  G+GKR     FR+ NR+GKGI AT   +      +V +  
Sbjct: 738 TEETTVENNQELAIMVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVGLQV 797

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           VN++++++L++ +G +IR  VN I   SR+  GV +     ++ + +V  +  S
Sbjct: 798 VNEDNELMLITSRGIIIRQAVNAIPTQSRSATGVRVQRLDDEDAIAAVAIVPPS 851


>gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
 gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
          Length = 955

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/905 (39%), Positives = 542/905 (59%), Gaps = 67/905 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WN ++ K AR
Sbjct: 71  EPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSAR 130

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+AA Y+ + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE RL+
Sbjct: 131 VVGDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLK 190

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  +L  L +D VDF PNYDG+ +EP VL   +P +L+NG  GIAVGMATNIP HNL 
Sbjct: 191 KLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLR 250

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E V+ C+ V+ NP+  +D +++++  PDFPTG ++ G + +  AY TGRG  +IR  +HI
Sbjct: 251 ETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAIIRAKTHI 310

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +G+RE I++ EIPYQVNK  +LEKIA+LV EK+I  ++ +RDESD+ G R VIELK
Sbjct: 311 EEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELK 370

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+A+V+LN LY+ T LQ  F +N+VAL   +P++  +  IL  F++FR EVV R T +
Sbjct: 371 RGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVVTRVTMF 430

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434
             +KAR R +++ G AIA+ANLD+ + IIR S N + A   L++R W A +  ++I    
Sbjct: 431 RRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRAN 490

Query: 435 ----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                     +D +  +    T  LS +Q + IL++RL  LTGL ++ I  E   L   I
Sbjct: 491 LDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKELVDTI 550

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R+  II   L +V  E    R+T+IV    +++ +D I   +MVVT++ 
Sbjct: 551 IDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTD 610

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K      YRAQ+RGG+G+    M++ D +  LF+ +TH  +L F++ G ++   VW
Sbjct: 611 TGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLHWLNVW 670

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P GS  ++G+ ++N+L L   E++T ++P   DE    +LY+  AT  G V++  + D
Sbjct: 671 DVPEGSSSSKGRPIVNMLELTDDEKVTAVLPIS-DEDYAKDLYIFMATADGTVKKTPIGD 729

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    R+G  A+ L   D ++       ++D++L +  G+ VRF    +R    R + GV
Sbjct: 730 FKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAMG-RAATGV 788

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G +VISM +                          GD E++T           
Sbjct: 789 RGMRLDEGQKVISMLV-------------------------CGDDEDVT----------- 812

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LT +E G+GKR+   ++    R  KGI +   ++ N  G +V+ 
Sbjct: 813 ---------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN--GKVVSA 855

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +ND+IIL++  G L+R  VNEIR+  R T+GV + S  +  ++V +ER+ E++  D
Sbjct: 856 LLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVTENDDGD 915

Query: 905 EAEST 909
            A   
Sbjct: 916 NASDN 920



 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 19/288 (6%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E + TI+   +  +    +  + A     V      +     ++  +A      + + + 
Sbjct: 545 ELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDE----RKTQIVANA----ENVKTK 596

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
           +       ++  T  G          R    R   G R   + +GD +  + +    D  
Sbjct: 597 DLIPLREMVVTLTDTGYIKSQASIEYRA-QKRGGQGKRAAQMKEGDIINQLFVATTHDVL 655

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILT 802
                  R+ ++          S     I ++   +  E   +      E   K+ +I  
Sbjct: 656 LCFTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFM 715

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            +  G  K+T   DF+   R+G  I A ++ + +    LV     +    ++L SD G +
Sbjct: 716 ATADGTVKKTPIGDFKNQRRAG--INAINLLEGD---VLVGAAVTDGKHDVMLFSDNGKV 770

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +R   +E+R   RA  GV      + ++V+S+    + E V    +TE
Sbjct: 771 VRFSEDEVRAMGRAATGVRGMRLDEGQKVISMLVCGDDEDVTVLTATE 818


>gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
 gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
          Length = 829

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/907 (40%), Positives = 554/907 (61%), Gaps = 86/907 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G+IV+R  ++IE     RE+IVV+E+PY VNK+ +++KIA+L REK I  I  +RDESD
Sbjct: 241 KGNIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  
Sbjct: 301 QTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q     
Sbjct: 361 QEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q++AIL++RL RLTGL RD I  E   L  +I
Sbjct: 417 ----------------------FGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  DIL+   R+  II  ELL ++      RRT+I E   + +EDED I ++D+++T++
Sbjct: 455 ADYKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K 
Sbjct: 515 HNGYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S
Sbjct: 575 YEIPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + G
Sbjct: 632 EFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMG-RTAAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L   D V+   I+                                          
Sbjct: 691 VRGINLRDNDYVVGSDILEP---------------------------------------- 710

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  
Sbjct: 711 -------------DSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   
Sbjct: 756 VTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDE 815

Query: 904 DEAESTE 910
           DE  + E
Sbjct: 816 DEEATDE 822


>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A
 gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
 gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 886

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/891 (43%), Positives = 550/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 597 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 652

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  +S   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 653 AVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 706 VAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 765

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERIC 753
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     + + DE+  
Sbjct: 766 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEENEDEQST 824

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
             +  + Q+R    + E   +  +   ++  +++E  +
Sbjct: 825 VSEDGTEQQREAVVNDETPGNAIHTEVIDSEVNDEDGR 862


>gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2]
 gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2]
          Length = 870

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/888 (43%), Positives = 542/888 (61%), Gaps = 86/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+   ++SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y
Sbjct: 4   QEEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 64  KKSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K AH +L DL K+TVDF PNYD +  EP VL  ++P +LVNG  GIAVGM TNIP
Sbjct: 124 EVRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+GEVV G +A+++ PDI ++ LM  I GPDFPT   I GR GI  AY TGRG I +R
Sbjct: 184 PHNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIYGRKGIHEAYTTGRGIITVR 243

Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E  S  + E IVVTE+PYQVNKA ++EKIAEL+R K I   + +RDESDRQG R+
Sbjct: 244 AKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I LKR    DV++NQLY++T++ + F +  +A+   +PE FTL  +L+ F+  R  V++
Sbjct: 304 AIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNRPELFTLKELLEQFLNHRRSVII 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT +   KA DRAH+L GL  A+ NLD VV +IR S +PE A+  L+Q           
Sbjct: 364 RRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQ----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +  L+++Q +AILE+RL RLTGL RD I  E   L  ++    +I
Sbjct: 413 ---------------SFELTQIQAQAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LSS   +  IIKQEL  +KDE    RRT+IVE   ++  ED I  EDMVVTV+  GY+KR
Sbjct: 458 LSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+++Y +Q RGGKG++ +  +DEDFV  LF+ STH + LF ++LG VY+ KV+ LP+  
Sbjct: 518 NPITLYASQHRGGKGKTAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAG 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             + GKA++N+L+  QGE++ T++  PE      + YVV ATK G V++  L  + +   
Sbjct: 578 RTSLGKAIVNLLNFEQGEKLATVLTVPE---FVEDRYVVMATKLGRVKKTDLMAYSRPRS 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G I +KL   DE+++      + DI L ++ G+ +RF  + +R    R S+GVRG+ + 
Sbjct: 635 GGLIGIKLADDDELIAAGITDGKTDIFLGSEGGKVIRFDENDVRT-TARGSMGVRGMRID 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G  V+ M                                                    
Sbjct: 694 PGSCVVGM---------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+    Q +LTV+E G+GKRT   ++R   R GKG+ +   S+ N  G +VA+  V D 
Sbjct: 702 -EVLNHGQTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERN--GKMVALLLVEDE 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D+++LV+D G LIR  + +I + SR T+GV + + +  E+++   R+ 
Sbjct: 759 DELMLVTDGGKLIRTGIQDISVISRNTQGVKLINLSPGEKLIGAARLP 806



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 112/274 (40%), Gaps = 15/274 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E L  +      V +  VV  + LG VK+  L  Y   R G  G  G+ + D+D +    
Sbjct: 595 EKLATVLTVPEFVEDRYVVMATKLGRVKKTDLMAYSRPRSG--GLIGIKLADDDELIAAG 652

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I    T +   S  G V +     +   +  + G   +  + ++ G  +  +      E 
Sbjct: 653 ITDGKTDIFLGSEGGKVIRFDENDVRTTARGSMG---VRGMRIDPGSCVVGM------EV 703

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
             +   ++  T++G  +R  + ++    R GK    + +     +++++     E++++L
Sbjct: 704 LNHGQTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKMVALLLVEDEDELML 763

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G+ +R  I  I V + RN+ GV+ I+L+ G+++I  A +   + +  +     +  
Sbjct: 764 VTDGGKLIRTGIQDISVIS-RNTQGVKLINLSPGEKLIGAARLPEEEEEEKDESEASEQS 822

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
              R       +E  + ++         +++  +
Sbjct: 823 EEGRVDPHEGPDEFDAGESHEPDSTESEDDKPDD 856


>gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 955

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/905 (39%), Positives = 541/905 (59%), Gaps = 67/905 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WN ++ K AR
Sbjct: 71  EPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSAR 130

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A Y+ + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE RL+
Sbjct: 131 VVGDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLK 190

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  +L  L +D VDF PNYDG+ +EP VL   +P +L+NG  GIAVGMATNIP HNL 
Sbjct: 191 KLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLR 250

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E V+ C+ V+ NP+  +D +++++  PDFPTG ++ G + +  AY TGRG  +IR  +HI
Sbjct: 251 ETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAIIRAKTHI 310

Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  +G+RE I++ EIPYQVNK  +LEKIA+LV EK+I  ++ +RDESD+ G R VIELK
Sbjct: 311 EEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELK 370

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+A+V+LN LY+ T LQ  F +N+VAL   +P++  +  IL  F++FR EVV R T +
Sbjct: 371 RGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVVTRVTMF 430

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434
             +KAR R +++ G AIA+ANLD+ + IIR S N + A   L++R W A +  ++I    
Sbjct: 431 RRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRAN 490

Query: 435 ----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                     +D +  +    T  LS +Q + IL++RL  LTGL ++ I  E   L   I
Sbjct: 491 LDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKELVDTI 550

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R+  II   L +V  E    R+T+IV    +++ +D I   +MVVT++ 
Sbjct: 551 IDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTD 610

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K      YRAQ+RGG+G+    M++ D +  LF+ +TH  +L F++ G ++   VW
Sbjct: 611 TGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLHWLNVW 670

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P GS  ++G+ ++N+L L   E++T ++P   DE    +LY+  AT  G V++  + D
Sbjct: 671 DVPEGSSSSKGRPIVNMLELTDDEKVTAVLPIS-DEDYAKDLYIFMATADGTVKKTPIGD 729

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    R+G  A+ L   D ++       ++D++L +  G+ VRF    +R    R + GV
Sbjct: 730 FKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAMG-RAATGV 788

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G +VISM +                          GD E++T           
Sbjct: 789 RGMRLDEGQKVISMLV-------------------------CGDDEDVT----------- 812

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LT +E G+GKR+   ++    R  KGI +   ++ N  G +V+ 
Sbjct: 813 ---------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN--GKVVSA 855

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +ND+IIL++  G L+R  VNEIR+  R T+GV + S  +  ++V +ER+ E++  D
Sbjct: 856 LLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVTENDDGD 915

Query: 905 EAEST 909
            A   
Sbjct: 916 NASDN 920



 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 19/288 (6%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E + TI+   +  +    +  + A     V      +     ++  +A      + + + 
Sbjct: 545 ELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDE----RKTQIVANA----ENVKTK 596

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
           +       ++  T  G          R    R   G R   + +GD +  + +    D  
Sbjct: 597 DLIPLREMVVTLTDTGYIKSQASIEYRA-QKRGGQGKRAAQMKEGDIINQLFVATTHDVL 655

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILT 802
                  R+ ++          S     I ++   +  E   +      E   K+ +I  
Sbjct: 656 LCFTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPISDEDYAKDLYIFM 715

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            +  G  K+T   DF+   R+G  I A ++ + +    LV     +    ++L SD G +
Sbjct: 716 ATADGTVKKTPIGDFKNQRRAG--INAINLLEGD---VLVGAAVTDGKHDVMLFSDNGKV 770

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +R   +E+R   RA  GV      + ++V+S+    + E V    +TE
Sbjct: 771 VRFSEDEVRAMGRAATGVRGMRLDEGQKVISMLVCGDDEDVTVLTATE 818


>gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 873

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/876 (42%), Positives = 535/876 (61%), Gaps = 60/876 (6%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             VSI DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRIL+ M +  +     + KCAR
Sbjct: 11  VPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCAR 70

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YDAL RM Q +SLR  LI+GQGN+GSVDGD PAA RYTE RL 
Sbjct: 71  VVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLS 130

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  LL DL KDTVDF PNYD S  EP VL A++P +LVNG GGIAVGMATNIP HNLG
Sbjct: 131 RMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLG 190

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++D  +A+I NPD+ L+ L+ ++ GPDFPTG +I G++GI  AY TGRGSI +RG S +
Sbjct: 191 EIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGSITMRGRSQV 250

Query: 257 EK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           EK   GDREQ+V TEIPYQVNKA ++ KIAE ++EKRI  I+++RDESDR+G R+V+ELK
Sbjct: 251 EKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELK 310

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +     V+LNQLYR T LQ+ F V  +++   +P   +L   L  F+  R EVV RR ++
Sbjct: 311 KDIFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRREVVTRRCRF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDLI 434
            L +A  +  ++ GL +A +++D +V  IR S +P+ AR  L +       +        
Sbjct: 371 ELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRAGRP 430

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           +       + G  +LSE Q +AILE+RL+RLTGL R+ +  E   L   I+    IL+  
Sbjct: 431 EPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAILADM 490

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L+ +I  EL  +K      RRT IV    +++ ED I  EDMVVT+SH GY+KR P S
Sbjct: 491 GLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHAGYLKRTPTS 550

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQRRGGKG  G+  R+ED+V+ LF+ STH+ V FFS  G V+ +KV+ +P     A+
Sbjct: 551 TYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIPQAPRNAK 610

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+A++N + +  GE++  I P P   S     +VV  T+ G +++  L+++      G I
Sbjct: 611 GRAIVNFVGMEPGEKVAAITPVP---SFDGETFVVTLTRRGQIKKTALNEYENYRDKGII 667

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            ++++  D++ +      + ++++ T+ G  +RFP   +R   GR ++GV+GI L +GD 
Sbjct: 668 GVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP-TGRATMGVKGIELDEGDV 726

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ + +                         SGD  +                       
Sbjct: 727 VVGLGV-------------------------SGDGRD----------------------- 738

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V E+G+GK+T   +FR+ +R GKG+   D S+ N  G +V V  V+ +D+++
Sbjct: 739 ----RVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERN--GPVVGVAMVSPSDEVL 792

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           +V+D+G +IR   +EIR   R  +GV I    +DER
Sbjct: 793 IVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 9/161 (5%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE---RCQELKLKEQFILTVSE 805
           +     +  M     +I  + EEI +   D      +  E   + ++L  +E  ++T+S 
Sbjct: 481 ERLRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISH 540

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ KRT +  +R   R GKG+   +  + + +  L   F  + +  +   SDKG +   
Sbjct: 541 AGYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQL---FVASTHSYVFFFSDKGKVFVK 597

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            V EI  A R  KG   V        E+V ++  +   +  
Sbjct: 598 KVYEIPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGE 638


>gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
 gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
          Length = 834

 Score =  776 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/905 (38%), Positives = 510/905 (56%), Gaps = 92/905 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+      E     I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTQDTTLPPE--GGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVKCAR+ G+V+G YHPHG+AA+YD L R+AQ W +R  L++GQGNFGS 
Sbjct: 59  YDGGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  +L D+GK+TVDF PNYDG   EPV+L AR+PN+LVNG  
Sbjct: 119 GNDPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +++PD   + L+    E I+GPDFPTG VI+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIVGHAG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSIV+R V  +E+ +  R+ +VVT++PYQVN   +  +IAELV E RI  I
Sbjct: 239 IEEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGI 298

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RD+S  R G R+VI LKR A   V+L  LY++T LQ  F  NMVAL    P   +L 
Sbjct: 299 ADIRDDSSSRTGQRLVISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVDNVPRTLSLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +VA + +V+VRRT+Y L +A  RAH+L GL  A+  LD V+ +IR S + + AR 
Sbjct: 359 AFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARS 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + EVQ  AIL+++L +L  L R  I +
Sbjct: 419 GLME--------------------------LLDVDEVQATAILDMQLRKLAALERQAIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L     EI +  DIL++ SR   I+ +EL  + D+    RRT IV    D+  ED I  
Sbjct: 453 DLAKHEAEIADLNDILANESRQRAIVSEELKEIVDKYGDERRTAIVPADGDVSIEDLIAE 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR   S+YR+QRRGGKG  G  +R +D V   F+ +TH  +LFF+  
Sbjct: 513 EDVVVTITRGGYAKRTKTSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  +  ARG+ + N+L+    E+I  ++   + +++    Y+V AT+ G
Sbjct: 573 GRVYRLKAYEIPEAARSARGQHVANLLAFQPDEKIAQVLALRDYDAA---PYLVLATRSG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L +F      G IA+ L   D ++     + ++++LL ++  Q +RF      +
Sbjct: 630 LVKKTALREFDSNRTGGIIAINLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEAL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D +++M +V                                 
Sbjct: 690 RPMGRATSGVIGMRFHDDDALLAMMVVRP------------------------------- 718

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + ++   + KG+ KRT   ++ +  R G G+    ++ 
Sbjct: 719 ----------------------QAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKITA 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             E G LV    V++ D+++ ++  G +IR  V+E+R  SRAT GV +   A+++ +V++
Sbjct: 757 --ERGDLVGALMVDEEDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDLAENDALVAI 814

Query: 895 ERIRE 899
            R  E
Sbjct: 815 TRNAE 819



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 103/302 (34%), Gaps = 61/302 (20%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   + + D++ +V    + +      + G      +  ++  
Sbjct: 373 VRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARSGLMELLDVDEVQAT 432

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           A    + ++   LA  ++   +  +   +A+  +    + + S QR ++S + +EI    
Sbjct: 433 A---ILDMQLRKLAALERQAIIDDLAKHEAEIADLNDILANESRQRAIVSEELKEIVDKY 489

Query: 777 NDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            D      +    +   ++L  +E  ++T++  G+ KRT +  +R   R GKGI+   + 
Sbjct: 490 GDERRTAIVPADGDVSIEDLIAEEDVVVTITRGGYAKRTKTSLYRSQRRGGKGIQGAQLR 549

Query: 834 KIN--------------------------------------EIGALVAVFPVNDNDQI-- 853
           + +                                          +  +     +++I  
Sbjct: 550 QDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAARSARGQHVANLLAFQPDEKIAQ 609

Query: 854 -------------ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                        +L +  G + +  + E    S  T G++  +   D+ V+    +   
Sbjct: 610 VLALRDYDAAPYLVLATRSGLVKKTALREF--DSNRTGGIIAINLRDDDVVIGARLVSPD 667

Query: 901 EI 902
           + 
Sbjct: 668 DE 669


>gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99]
 gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99]
          Length = 839

 Score =  776 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/918 (37%), Positives = 516/918 (56%), Gaps = 93/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ ++    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   +  + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D D +A +    + ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V +RRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R+ I +
Sbjct: 421 GLIE--------------------------LLGIDEIQAQAILDMQLRRLAALERERIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATQNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ E D+LL +  GQ +RF  +   +
Sbjct: 632 VVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNADDRLLSLNVVREG------------------------------ 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   ++ +  R GKG+      +
Sbjct: 722 -----------------------TYLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDR 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 759 R--RGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRESEIVDE--AESTE 910
            R  E E  DE  AE+T+
Sbjct: 817 ARNAE-ENADEAVAEATD 833



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 94/241 (39%), Gaps = 13/241 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           +V  +  G VK+  L+ + + R G  G   + +R ED +   
Sbjct: 606 EERIAQVIQIKSYEDAPYLVLATQNGVVKKSKLTDFDSNRSG--GIVAINLRGEDELVGA 663

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + S+   +L  S+ G   +       +  P  R  + +  +  N  +R+ ++    E  
Sbjct: 664 VLCSSEEDLLLVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVRE-- 720

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
                 Y++ AT  G  +R  + ++    R GK  + +        ++       ++++ 
Sbjct: 721 ----GTYLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELY 776

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T  G  +R     +R  AGR + GVR ++L +GD ++++A     +AD          
Sbjct: 777 AITSGGGVIRTAARQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEENADEAVAEATDTD 835

Query: 758 M 758
            
Sbjct: 836 E 836


>gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 829

 Score =  776 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/907 (40%), Positives = 553/907 (60%), Gaps = 86/907 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG
Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G+IV+R  ++IE     RE+IVV+E+PY VNKA +++KIA+L REK I  I  +RDESD
Sbjct: 241 KGNIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+ I+++R ASA V+LN L++ T LQ+ F +NMVA+    P   TL  +L+ ++  
Sbjct: 301 QTGMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNGAPHFLTLKQMLEYYLHH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+ RRTK+ L KA  RAH+L GL IA+ ++DE++RIIR S N + A+ +L+Q     
Sbjct: 361 QEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q++AIL++RL RLTGL RD I  E   L  +I
Sbjct: 417 ----------------------FGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  DIL+   R+  II  ELL ++      RRT+I E   + +EDED I ++D+++T++
Sbjct: 455 ADYKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K 
Sbjct: 515 HNGYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S
Sbjct: 575 YEIPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + G
Sbjct: 632 EFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMG-RTAAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L   D V+                                               
Sbjct: 691 VRGINLRDNDYVVG---------------------------------------------- 704

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   ++      +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  
Sbjct: 705 -------SDILEPNSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   
Sbjct: 756 VTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDE 815

Query: 904 DEAESTE 910
           DE  + E
Sbjct: 816 DEKSTDE 822


>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 887

 Score =  776 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/891 (43%), Positives = 550/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 64  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 184 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 244 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 304 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 364 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 416 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 458 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 518 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 578 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 636 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 695 TLREGDEVVGLDVAHANSVD---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 762 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 812



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 502 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 560

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 561 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFAT 620

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 621 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 675

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 676 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 721



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 598 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 653

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  +S   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 654 AVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 706

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 707 VAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 766

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERIC 753
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     + + DE+  
Sbjct: 767 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEENEDEQST 825

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
             +  + Q+R    + E   +  +   ++  +++E  +
Sbjct: 826 VSEDGTEQQREAVVNDETPGNAIHTEVIDSEVNDEDGR 863


>gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 865

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/909 (41%), Positives = 552/909 (60%), Gaps = 88/909 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  IS        I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MSDQPISGGT----NIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV +NK Y K ARI GEV+GKYHPHG++++YD + RMAQ+WSLR  +++GQGNFGSV
Sbjct: 57  EDLGVHYNKAYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL++ A  +L D+ KDTVDF+PN+D S QEP VL ++ PN+L+NG  
Sbjct: 117 DGDSPAAMRYTEARLKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HN+ EV+DG +A IDN DI +  LM  ++GPDFPTGA I G  GI++A
Sbjct: 177 GIAVGMATNMAPHNITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIYGYQGIRSA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  S IE TS  +EQI+V+EIPY VNKAAM+EKIA +V EK+I  I+D+R
Sbjct: 237 FETGRGRIVLRSRSTIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+V +LKR A A+V+LN L++Y+ LQS FSVN V L   +P    L  ++  
Sbjct: 297 DESDREGMRIVFDLKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGRPMTLNLKEMIMY 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT++ LN+A  RAH+L G  IA+ +LDEV+++IR S +PE AR  LM  
Sbjct: 357 FVEHRHEVVTRRTQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMTN 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +SE+Q +A+L+LRL RLTG+ RD I  E   +
Sbjct: 417 --------------------------FGMSEIQAKAVLDLRLQRLTGMERDKIIKEYEEI 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I    +IL+S+   + IIKQEL  +K+     RR+ IV    D+  ED I  E MV+
Sbjct: 451 MALINRLKEILASKELRMEIIKQELDEMKERYGDKRRSDIVHASDDINIEDMIPEEQMVI 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR  LS YR Q RGG G  G   ++ DF   LF+ STH  +LFF+  G V+ 
Sbjct: 511 TISHEGYIKRTALSEYRTQGRGGVGSKGAGSKESDFTEHLFVASTHNYLLFFTEYGKVFW 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            KV+ +P G    +G+A+ N++ +  G+++ T++      D+   NN Y+V  T+ G ++
Sbjct: 571 LKVYEIPEGGKTTKGRAIQNVIQIEPGDKVRTVINVKTLTDDDYINNNYLVMCTEQGVIK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +    G  A+ +   D +L V+  +  +++++  + G+ +RF  S +R    
Sbjct: 631 KTTLEAYSRPRSGGINAITIHEGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPMG- 689

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GV+G++LA   D V+ +  V   D                                
Sbjct: 690 RTAAGVKGVTLAHDKDVVVGLVAVSSPDTT------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKR+   D+R++NR GKG++  ++S+  +
Sbjct: 720 ----------------------LLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV++  VND  QI++++  G  IR+ V+++R+  RAT+GV +      + + SV + 
Sbjct: 756 TGDLVSILGVNDQYQIMIINKSGITIRMAVSDLRVMGRATQGVRLIKIQDGDSIASVAKF 815

Query: 898 RESEIVDEA 906
             ++I+DE 
Sbjct: 816 EFTDIIDEE 824



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 108/283 (38%), Gaps = 18/283 (6%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
               RT I    L  +D    +  + +V  +  G +K+  L  Y   R G  G + + + 
Sbjct: 597 GDKVRTVINVKTLTDDDY---INNNYLVMCTEQGVIKKTTLEAYSRPRSG--GINAITIH 651

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D + D+ + S    ++     G   +    ++      A G   +  ++L   + +  
Sbjct: 652 EGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPMGRTAAG---VKGVTLAHDKDVVV 708

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVE 688
            +       S  +  ++  ++ G  +R+ + D+   NR GK    L     + D ++S+ 
Sbjct: 709 GLV----AVSSPDTTLLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISEKTGD-LVSIL 763

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               +  I++  K G  +R  +S +RV   R + GVR I +  GD + S+A     D   
Sbjct: 764 GVNDQYQIMIINKSGITIRMAVSDLRVMG-RATQGVRLIKIQDGDSIASVAKFEFTDIID 822

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +E     K       +      +    + +     + +EE  +
Sbjct: 823 EEGGELAKPDLGDVIVAEEGAADEAEDETEEDAAEDSTEESPE 865


>gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 850

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 550/898 (61%), Gaps = 84/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K
Sbjct: 6   NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP H
Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R  
Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM               
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q +AIL++RL RLTGL RD + NE +     I +  DIL+ 
Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  II +ELL ++++    RRT + V  +L +EDED I  E++VVT++H GY+KR+P
Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     
Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  +IN+L ++  E+I T++  P D+  +   +Y+ F T+ G V+R  +S+F  I ++
Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE+++V       +I++ T  G  V F    IR    R++ GVRGI L  
Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSMG-RSAAGVRGIRLRD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  AI+                                                  
Sbjct: 699 NDYVIGSAILEP------------------------------------------------ 710

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +  +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++
Sbjct: 711 -----ESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   +  + +E T
Sbjct: 764 DIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821


>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
 gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
          Length = 871

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/897 (41%), Positives = 539/897 (60%), Gaps = 90/897 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPD-----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN        D++ L+ I++GPDFPTGA+ILG TGI  AY T
Sbjct: 182 NIPPHNLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGTTGINEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R +++IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DLRDES
Sbjct: 242 GRGKIRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DRQG R+ IEL+R  + +V+LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 302 DRQGMRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQPKVLNLQEMLGYYLD 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N   A+  L++R   
Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ +AI+++RL  LTGL R+ I  E   L   
Sbjct: 419 -----------------------FSLTDVQAQAIVDMRLRALTGLEREKIEAEYAELMDR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LLG+I++E+L + ++    RRT I     D+  ED I   + V+ ++
Sbjct: 456 IAELKAILADEKKLLGVIREEILLIAEKYGDERRTSIGFDEYDISMEDLIPVTNTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ L  +RAQ RGGKG  G+   DED++ +L + ++H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSLDNFRAQNRGGKGIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L  GE+IT ++P  E        Y+  ATK+G V++  ++
Sbjct: 576 YEIPEAGRTARGTAIINLLQLQPGEKITAVIPIKEY---TEGHYLFMATKNGIVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    E DI L TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRS-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G++L  GD+V+ M +    DA                                     
Sbjct: 692 VIGMNLTDGDKVVGMQMESQGDA------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++ VSEKG GK T + +F   NR GKG++   +++  + G +V 
Sbjct: 715 ----------------LMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITE--KTGNIVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V  VN +D+++L++ +G +IR+ V++  +  R T GV + + A D  V S+ ++RE 
Sbjct: 757 VKAVNQDDEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMNLADDVTVASIAKVRED 813


>gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
 gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
          Length = 848

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/901 (42%), Positives = 547/901 (60%), Gaps = 90/901 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                           GR + GVRG+ LA GDQV+S+ +                     
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKT------------------ 764

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                 + + +T  +N      ++SE                  KG G +      ++S 
Sbjct: 765 ------EGDVLTVTENGYGKRTSLSEYPT---------------KGRGTQGVVS-IKVSE 802

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+G  + A  V++                D+ +++++ GTL+R  V E+    R T+GV 
Sbjct: 803 RNGSVVGAVQVAE---------------GDEFMMITNAGTLVRTRVAEVSQVGRNTQGVT 847

Query: 882 I 882
           +
Sbjct: 848 L 848



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 105/304 (34%), Gaps = 33/304 (10%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEIL 685
           E          +E       VV  +  G V+   LSD+    R   GK A K+   D I 
Sbjct: 519 EITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIE 578

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +      ++ILL +  G+  R  +  +   A R + G   ++L   ++   +  +L   
Sbjct: 579 RLLVANTHDNILLFSTRGKTYRMKVYQL-PLASRTARGKPIVNLLPLEENERITAILPVT 637

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVS 804
              +++  +M       +  S D           ++     +     ++   E  I+  S
Sbjct: 638 EFSEDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFS 697

Query: 805 EKGFGKRTSSYD-------------------------FRISNRSGKGIRATDVSKINEIG 839
           + G   R    +                          R   R+  G+R   ++  ++  
Sbjct: 698 KFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQ-- 755

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
            +V++        ++ V++ G   R  ++E     R T+GVV    ++ +  VV   ++ 
Sbjct: 756 -VVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVA 814

Query: 899 ESEI 902
           E + 
Sbjct: 815 EGDE 818



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +  +A ++H  A  +  +  ++      R    D          + +     +   +EL 
Sbjct: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARR-------TEITAATHDIDMEELI 533

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E  ++T+S +G+ K     D+    R GKG  AT + + + I  L+     N +D I+
Sbjct: 534 AREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVA---NTHDNIL 590

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           L S +G   R+ V ++ +ASR  +G   V +    ++ER+ ++  + E
Sbjct: 591 LFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE 638


>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
 gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
          Length = 872

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/900 (41%), Positives = 538/900 (59%), Gaps = 40/900 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ      L  D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG VAVI NP+I    LM+ I GPDFPTGA ILG   IK AY TGRGSI +R
Sbjct: 185 PHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGVGAIKEAYTTGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV++IE        DRE I++TE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR G
Sbjct: 245 GVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+   L   L  F+ FR E
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILNLKQFLNVFLDFRIE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+++LD ++ +IR + +  TA+ EL+         
Sbjct: 365 SITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELIT-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSEVQ  AIL+++L RLT L  D IR E   L  +I + 
Sbjct: 417 ------------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ E+  +K    TPRRT I     ++++ D I  E  ++ ++  GY
Sbjct: 459 QDILARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G++   ++D+D +        H SVLFFS  G VY  K +++P
Sbjct: 519 IKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           +GS  +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++ +L+ F  
Sbjct: 579 LGSRTSRGTPIVQLLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTELAAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V     E+ I++ ++LG  + F  +  ++   GR + GV+ 
Sbjct: 636 IRANGLIAISLEEGDQLRWVRRARVEDSIIVGSRLGMAIHFRCTHEQLRPLGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L KGD+++ M I+  A  D                + + D E             N+ 
Sbjct: 696 MKLKKGDELVGMDILPAAILDTLN-----TEEPDIDDIETEDIETAVETTEVLETLENLE 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +  
Sbjct: 751 AVEVSSTASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATLGI 810

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN +++I++V+++G +IR  VN I I SR+  GV +    +D+ +  V  +      +E 
Sbjct: 811 VNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDTGDEEE 870


>gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
 gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
          Length = 845

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/894 (43%), Positives = 563/894 (62%), Gaps = 90/894 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ +++ I  V I  EM+NS++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM  +G   +
Sbjct: 5   NDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLGFTPD 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCA   GEV+GKYHPHG+AA+YD++ RMAQD+SLR  L++G GNFGSVDGDPPAA 
Sbjct: 65  KAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDPPAAM 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  ++ D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 125 RYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP  NL EV+DG V VI+ P   +D L +II+GPDFPT  +I+G++GI++AY TGRG I
Sbjct: 185 NIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIVGKSGIRDAYRTGRGRI 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R V++IE+ S ++++IVVTE+PYQVNKA ++EKIA+LV+EKRI +I+DLRDESDR G 
Sbjct: 245 IMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDESDRTGM 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVA 363
           R+VIELKR A+A+++LNQL+++T +Q  FSVNM+AL       ++P    L   +  +V 
Sbjct: 305 RIVIELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAIDHYVD 364

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++V+VRRT++ L+KA  RAH+L GL IA+ NLDEV+RIIR S N   A+  LM+R   
Sbjct: 365 HQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMER--- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     SE Q +AI+++RL RLT L R+ +  E   L  +
Sbjct: 422 -----------------------FSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAK 458

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK   D+L++   +L IIK+EL  +K +    RRT+I+    D + ED I  +D V+T++
Sbjct: 459 IKYYKDVLANEFMVLDIIKEELGEIKGKFGDERRTKIIPDETDFDVEDLIEEQDSVITLT 518

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVKR+P   Y++QRRGGKG  G+  R+EDFV +LF  STH  ++FF++ G VY+ K 
Sbjct: 519 HFGYVKRLPTDTYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKT 578

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P    QA+G A++N+L L+Q E++TT++P  E +     +Y++ ATK+G V++  L 
Sbjct: 579 YEIPEAGRQAKGTAIVNLLQLDQEEKVTTVIPIKEYKE---GMYLILATKNGVVKKTDLM 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I + G  A+ L   DE++ V       DILL TK G  +RF    +R    R S G
Sbjct: 636 EYDHIRKGGLTAVALRENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPLG-RVSQG 694

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L   D VI M +                                           
Sbjct: 695 VRGIKLDDDDVVIGMGV------------------------------------------- 711

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                      +++  +L V+E+GFGKRT   ++++  R GKGI    V++  + G +  
Sbjct: 712 ----------FIEDTSLLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTE--KTGKIAG 759

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  VN+ D ++L+S  GT+IR+ VN+I +  RAT+GV +    +   +V + RI
Sbjct: 760 MKLVNEKDDVMLISSDGTIIRINVNDISVLGRATQGVTLMRMDESVYLVGIARI 813


>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 815

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/883 (42%), Positives = 539/883 (61%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y 
Sbjct: 7   QGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 127 VRMSKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNP+  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 187 HNMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 247 RAHIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  IL  +++ +E V+ RR
Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM              
Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMD------------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 414 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILA 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R ++L IIK EL+ V+D+    RRT I     +M+  D I  ED+VVT++   Y+KR+P
Sbjct: 461 DRMKVLAIIKDELIEVRDKYGDERRTEITFDASEMDITDLIAEEDVVVTLTMSNYIKRIP 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G V+  K + +P    Q
Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQ 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L++   ERIT ++   E +    + ++   TK G V++  L++F  I +SG
Sbjct: 581 AKGTAIINLLAVEADERITAVIQVREFK---PDRFLFLGTKRGVVKKTPLAEFANIRKSG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+LG+ + FP S +R    R + GVRGI LA G
Sbjct: 638 LKAVNLDEEDELIGVKFTDGENRIMLGTRLGKAIAFPESGVRSMG-RVTRGVRGIMLADG 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                                                 E    +
Sbjct: 697 -----------------------------------------------------DEVVAMD 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V ++ +
Sbjct: 704 ILKSDSEVLTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVREDQE 761

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++L++ +G +IR  VNEI   SR T+GV + + A+++RV S+ 
Sbjct: 762 LMLITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASMA 804



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              E+   +   +E+ ++  T      R P+   R    R  VGV+G+   + D ++S  
Sbjct: 491 DASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETD-IVSDL 548

Query: 740 IVLHADAD-----YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++     D        R+  +K               I +L    + E   +  + +E K
Sbjct: 549 LITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQVREFK 608

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             ++F+   +++G  K+T   +F    +SG  ++A ++ + +E   L+ V   +  ++I+
Sbjct: 609 -PDRFLFLGTKRGVVKKTPLAEFANIRKSG--LKAVNLDEEDE---LIGVKFTDGENRIM 662

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           L +  G  I  P + +R   R T+GV     A  + VV+++ ++    V
Sbjct: 663 LGTRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDILKSDSEV 711


>gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11]
 gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987]
 gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A]
 gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85]
 gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503]
 gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A]
 gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
 gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210]
 gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11]
 gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A]
 gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148]
          Length = 838

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/912 (37%), Positives = 513/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
 gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
          Length = 837

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/920 (40%), Positives = 563/920 (61%), Gaps = 102/920 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRI++ M
Sbjct: 1   MEDNIF-------DKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ K+TVDF PN+D + +EP VL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTG +ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +I+V+E+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G RVVIEL+R A+A+VILNQLY++T LQ  F V M+AL G +P+   L+
Sbjct: 294 ITDLSDQSSREGMRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLALVGNEPKVMNLM 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S   + A+ 
Sbjct: 354 EMLNYYLKHQEEVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKS 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM+R                            L++VQ++AI+++RL  LTGL R+ +  
Sbjct: 414 ELMER--------------------------FGLTDVQSQAIVDMRLRALTGLEREKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E  +L  +I+    IL+ R  LLG+IK+E+L ++D+    RRT I     D+  ED I R
Sbjct: 448 EYKALMEQIEHLRAILADRKLLLGVIKEEILVIRDKYGDERRTSIGFDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+V+T++ LGY+KR+    ++AQ RGGKG  G+   DED+V +LF+ +TH  ++FF++ 
Sbjct: 508 EDVVITMTKLGYIKRMSHDTFKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  +RG A++N+L L  GE+I+ ++P    E   ++ Y++ ATK G
Sbjct: 568 GRVYRMKAYEIPEASRTSRGTAIVNLLQLMPGEKISAVIPI---EKYNDDEYLLMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++  + ++  + ++G  A+ L   DE++ V+    ++D+ + TK GQC+RF  S +R 
Sbjct: 625 LIKKTPIKEYANVRKTGLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRP 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L   D+VI M I                                   
Sbjct: 685 -TGRTSMGVRGMNLVDRDEVIGMQI----------------------------------- 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +   +L VSE G GKRTS  +F   NR GKG++   +++ 
Sbjct: 709 ------------------DSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  V+++++I++++ +G +IR+  + I    R T GV + +  + ++V  + 
Sbjct: 750 -KTGNVVGVKAVDEDNEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIA 808

Query: 896 RIR-----ESEIVDEAESTE 910
           ++R     E ++V+  ESTE
Sbjct: 809 KVRRGDESEDDLVEPEESTE 828


>gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803]
 gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803]
          Length = 843

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/903 (41%), Positives = 564/903 (62%), Gaps = 86/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++++YD + RMAQ WS+R +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L DL K+TVD + N+D S  EPVV+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+N DID+D L++ I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             SH+E+  G RE +VVTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G RVV
Sbjct: 243 AKSHMEEI-GGREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKR A  +++LN L+++T+LQS FSVN +AL   +PE   L  ++  FV  R +VVVR
Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGRPEMLNLKDLIYHFVEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+ +IR S N E AR +L++R           
Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I++   IL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + +IK ELL VK++    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDERRSQIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+ G   R+EDF+  LF+ + H  +LFF+  G  Y  +V+ +P GS 
Sbjct: 516 SLSEYKTQNRGGVGQKGSNTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++++  +++   +   +  DE   N+ +V+ ATK G V++ +L  + +  
Sbjct: 576 ASKGRAIQNLINIDPEDKVNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + ++L  + G+ +RF  S  R    RN+ GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGNSQVMLGLRSGKAIRFEESKTRPMG-RNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   ++D                                         
Sbjct: 695 ADDKDEVVGMIAVNDFESD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V+
Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAE 907
           D D +++++  G +IR+ V ++R+  RAT+GV + +   ++ + +V ++   E   D  E
Sbjct: 761 DIDDLMIINKSGIVIRMAVEDLRVMGRATQGVRLINLKGNDAIAAVAKVLHDEDDLDSME 820

Query: 908 STE 910
             E
Sbjct: 821 DAE 823


>gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
 gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
          Length = 828

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/917 (41%), Positives = 557/917 (60%), Gaps = 99/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL E+++  V +ID+      +  ++ +++II+GPDFPTG +ILG  
Sbjct: 174 GIAVGMATNIPPHNLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +I+VTE+PY VNKA ++EKIAE+VR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G RVVIEL++  +A+V+LNQLY++T LQ  F V M+AL   +P    ++
Sbjct: 294 ITDLSDQSSREGMRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVNNEPRVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S   + A+ 
Sbjct: 354 DMLNYYLQHQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM+R                            LSEVQ++AI+++RL  LTGL R+ + N
Sbjct: 414 ELMER--------------------------FGLSEVQSQAIVDMRLRALTGLEREKLEN 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ R  LLG+IK+E+L ++D+    RRT I     D+  ED I +
Sbjct: 448 EYQELMKQIRELKAILADRKLLLGVIKEEILIIRDKYGDERRTSIGFDEFDISMEDLIPK 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+V+T++ LGY+KR+    +++Q RGGKG  G+    ED+V +LF+  TH  ++FF++ 
Sbjct: 508 EDVVITMTKLGYIKRMSHDTFKSQNRGGKGIKGMQTLKEDYVEELFMTHTHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  +RG A++N+L L  GE+I+ ++P    E   +  Y+  ATK G
Sbjct: 568 GRVYRMKGYEIPEASRTSRGTAIVNLLQLMPGEKISAVIPI---EEYKDGEYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++++  + ++G  A+ L   DE++ V+    + D+LL TK GQC+RF    +R 
Sbjct: 625 LVKKTPITEYAHVRKTGLAAITLREEDELIEVKYTDNDRDVLLVTKYGQCIRFDEKDVRP 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++LA  D+VI M +                                   
Sbjct: 685 -TGRTSMGVRGMNLADRDEVIGMQL----------------------------------- 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +   +L VSEKG GKRTS  +F   NR GKG++   +++ 
Sbjct: 709 ------------------DSQGCDLLIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  VN +D++++++ +G +IR+    I +  R T GV + +  + + V S+ 
Sbjct: 750 -KTGNVVGVKAVNHDDEVMIINTEGIIIRMKCEGISVLGRVTSGVKLINLQEGDIVASIA 808

Query: 896 RIRE--SEIVDEAESTE 910
           ++R+   E +D  E T+
Sbjct: 809 KVRKGDEEPIDSVEDTD 825


>gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
 gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
          Length = 850

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 550/898 (61%), Gaps = 84/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K
Sbjct: 6   NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP H
Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R  
Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM               
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q +AIL++RL RLTGL RD + NE +     I +  DIL+ 
Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  II +ELL ++++    RRT + V  +L +EDED I  E++VVT++H GY+KR+P
Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     
Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  +IN+L ++  E+I T++  P D+  +   +Y+ F T+ G V+R  +S+F  I ++
Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE+++V       +I++ T  G  V F    IR    R++ GVRGI L  
Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSMG-RSAAGVRGIRLRD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  AI+                                                  
Sbjct: 699 NDYVIGSAILEP------------------------------------------------ 710

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +  +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++
Sbjct: 711 -----ESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   +  + +E T
Sbjct: 764 DIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821


>gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2]
          Length = 827

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/912 (41%), Positives = 556/912 (60%), Gaps = 96/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+ I         +  + +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MDENTI------FDKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 55  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQ 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  + +IDN      +  ++ L+EII+GPDFPTGA ILGR+
Sbjct: 175 GIAVGMATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRS 234

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI  AY TGRG I +R V+ IE  +  +++I+VTE+PY VNKA ++EKIA LVREK++  
Sbjct: 235 GIDQAYRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEG 294

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I +LRDESDR G R+ IEL+R A+A+VILNQLY++T LQ  F V M+AL   +P+   L 
Sbjct: 295 ITELRDESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLH 354

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +++VV RRT+Y LNKA +RAH+L GL IA  N+DEV++IIR + N + A+ 
Sbjct: 355 EMLDYYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKL 414

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM+R                            LS+ Q +AI+++RL  L GL R  +  
Sbjct: 415 ELMER--------------------------FGLSDAQAQAIVDMRLRALNGLERAKLEK 448

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+   +LLG+IK E+  ++D+    RRT+I   + D+  ED I R
Sbjct: 449 EYKELMERIGELKAILADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPR 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E+ V+T++ LGY+KR+ +  +++Q RGGKG  G+   DED++ +LF+ +TH  ++FF++ 
Sbjct: 509 ENTVITMTKLGYIKRMTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNT 568

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A++N+L L  GE+IT ++P  + E      Y++ ATK+G
Sbjct: 569 GRVYRLKAYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYEE---GKYLLMATKYG 625

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++ + ++  I ++G  A+ L   D+++ V+    + D+ L TK GQC+RF  S +R 
Sbjct: 626 VVKKSSIMEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRC 685

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R S+GVRGI+L                                        +E+  +
Sbjct: 686 IG-RTSMGVRGINLTGD-------------------------------------DEVIGM 707

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + DS  E                 +L VS  G GKRT + +F   +R GKGI+   +++ 
Sbjct: 708 QLDSQGEA----------------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE- 750

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  VND+++I++++ +G +IR  V+ I I  R T GV + +  ++  V S+ 
Sbjct: 751 -KTGDVVGVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIA 809

Query: 896 RIRESEIVDEAE 907
           ++RE ++ DE E
Sbjct: 810 KVREEKLEDEME 821


>gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 811

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/890 (41%), Positives = 541/890 (60%), Gaps = 85/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  +++ DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRI++ M  +G+  +K + KC
Sbjct: 5   KVVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+ KYHPHG+ A+YDAL RMAQ +S+R  L++G GNFGSVDGD  AA RYTE R
Sbjct: 65  AHIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L D+ K+TVDF PNYD S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 MTKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DG + ++DNP+ D   LM+ ++GPDFPT   I+G  GI +AY TGRGSI IR  +
Sbjct: 185 LAEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIMGVQGIISAYTTGRGSIKIRAQA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+ SG + +IVV EIPYQVNKA ++EKIAELVR+K+I  I+DLRDESDR+G R+VIEL
Sbjct: 245 EIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR     ++LNQLY++T +Q  F V M+AL   +P    L  +L  ++  ++++++RRT 
Sbjct: 305 KRDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPNVLNLRDMLYYYLEHQKDIIIRRTT 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA  RAH++ GL IA+ANLDEV+  IR S   E A++ L+++              
Sbjct: 365 FDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEK-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q +AILE+RL RLTGL  + +  E   L  +I     ILS  
Sbjct: 411 ------------FLLTEIQAQAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L IIK ELL ++ +    RRT I +     + ED I  EDMV+T++  GY+KR+PL 
Sbjct: 459 GKILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLD 518

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGG+G S + ++++DF+  LFI STH  +LFF++ G VY+ KV  +P    Q++
Sbjct: 519 TYRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSK 578

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A+IN+L +   E++TT++P  E      + ++   TK+G V++  L++F    R G I
Sbjct: 579 GTAIINLLFVGTEEKVTTVIPVKEFN---KDEFLFMCTKNGIVKKTSLNEFDTSRRDGII 635

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  D+++ V     + +I++ T+ G  +RF    +R    R + GVRGI L +GD 
Sbjct: 636 ALTLDDHDDLVDVRLTNGQEEIIIGTQKGLAIRFSEDDVRKLG-RIAKGVRGIGLIEGDF 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M  V +                                                   
Sbjct: 695 VVGMDTVRNEGD------------------------------------------------ 706

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ GFGK+T   ++R+  R GKGI    +S  N  G +V++  V  +++I+
Sbjct: 707 -----LLVVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRN--GPVVSLLVVKPDEEIM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++S +G +IR+ VNEI    RAT+GV +   +  + V ++ ++      D
Sbjct: 760 MLSSEGIIIRMKVNEISTTGRATQGVTLMKLSSGDSVATIAKVNAEVDAD 809


>gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 840

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/912 (41%), Positives = 556/912 (60%), Gaps = 96/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+ I         +  + +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MDENTI------FDKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 55  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQ 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  + +IDN      +  ++ L+EII+GPDFPTGA ILGR+
Sbjct: 175 GIAVGMATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRS 234

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI  AY TGRG I +R V+ IE  +  +++I+VTE+PY VNKA ++EKIA LVREK++  
Sbjct: 235 GIDQAYRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEG 294

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I +LRDESDR G R+ IEL+R A+A+VILNQLY++T LQ  F V M+AL   +P+   L 
Sbjct: 295 ITELRDESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLH 354

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +++VV RRT+Y LNKA +RAH+L GL IA  N+DEV++IIR + N + A+ 
Sbjct: 355 EMLDYYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKI 414

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM+R                            LS+ Q +AI+++RL  L GL R  +  
Sbjct: 415 ELMER--------------------------FGLSDAQAQAIVDMRLRALNGLERAKLEK 448

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+   +LLG+IK E+  ++D+    RRT+I   + D+  ED I R
Sbjct: 449 EYKELMERIGELKAILADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPR 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E+ V+T++ LGY+KR+ +  +++Q RGGKG  G+   DED++ +LF+ +TH  ++FF++ 
Sbjct: 509 ENTVITMTKLGYIKRMTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNT 568

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A++N+L L  GE+IT ++P  + E      Y++ ATK+G
Sbjct: 569 GRVYRLKAYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYEE---GKYLLMATKYG 625

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++ + ++  I ++G  A+ L   D+++ V+    + D+ L TK GQC+RF  S +R 
Sbjct: 626 VVKKSSIMEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRC 685

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R S+GVRGI+L                                        +E+  +
Sbjct: 686 IG-RTSMGVRGINLTGD-------------------------------------DEVIGM 707

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + DS  E                 +L VS  G GKRT + +F   +R GKGI+   +++ 
Sbjct: 708 QLDSQGEA----------------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE- 750

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  VND+++I++++ +G +IR  V+ I I  R T GV + +  ++  V S+ 
Sbjct: 751 -KTGDVVGVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIA 809

Query: 896 RIRESEIVDEAE 907
           ++RE ++ DE E
Sbjct: 810 KVREEKLEDEME 821


>gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
 gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
          Length = 841

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/915 (39%), Positives = 554/915 (60%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +ID+      +  ++ +++II+GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R +++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL G +P+   L+
Sbjct: 294 ITDLSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVGNQPKVMNLL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +E+VV RRTKY LNKA++RAH+L GL IA+ N+DEV++IIR S N + A++
Sbjct: 354 EMLNYYLKHQEDVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQ 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL++R                            LSEVQ +AI+++RL  LTGL R+ I  
Sbjct: 414 ELIKR--------------------------FGLSEVQAQAIVDMRLRALTGLEREKIEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ +  LLG+IK+E+L + ++    RRTRI     D+  ED I R
Sbjct: 448 EYAELMKKIEEFKAILADKKLLLGVIKKEILVISEKYGDDRRTRIGYDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++ LGY+KR+ +  +++Q RGGKG  G+   ++D++ +LF+ ++H  ++FF++ 
Sbjct: 508 ENVVITMTKLGYIKRMTMDTFKSQNRGGKGIKGMQTLEDDYIRELFVTTSHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT I+P  E E      Y+  AT+ G
Sbjct: 568 GRVYRMKAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYEE---GKYLFMATEKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D+  + ++G  A+ L   D ++ V+      DILL T+ G C+RF  + +R 
Sbjct: 625 LVKKTPIQDYANVRKTGLAAIALREDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L   D VI M                                     
Sbjct: 685 -TGRVSMGVRGMNLTDNDVVIGM------------------------------------- 706

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                           +   +   +L VSEKG GKRT+  +F   NR GKG++   +++ 
Sbjct: 707 ----------------QTASQGTDLLIVSEKGMGKRTNMDEFTRQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V +  V+++ +I++++ +G +IR+  ++I +  R T GV + +  + ++V SV 
Sbjct: 750 -KTGNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEKDKVASVA 808

Query: 896 RIRESEIVDEAESTE 910
           ++R++    + E  E
Sbjct: 809 KVRKASAEIDGEQVE 823


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/889 (41%), Positives = 544/889 (61%), Gaps = 86/889 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D   E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE++DG + +IDNP++ +  LM  I+GPDFPTGA I+G+ GI+ AY TGRG I
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE     R +IVVTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G 
Sbjct: 242 VVRADAEIE-EENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELKR A+ +V+LN LY++T LQ  F V M+AL   +P    +  IL  ++ +++EV
Sbjct: 301 RIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM++        
Sbjct: 361 ITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AILE+RL RLTGL R+ I  E   L  +I+   
Sbjct: 413 ------------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLK 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S  +LLG+IK EL  +K +    RRT+I + + +++ ED I  ED+V+T+++ GY+
Sbjct: 455 SILASEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    Y AQRRGGKG   +  +++DFV  + I STH+ VLFF++ G VYK + + +P 
Sbjct: 515 KRISADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPD 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  +IN++++   E+I T++   + +      ++  ATK+G V++  +S+F  +
Sbjct: 575 AGRQAKGTNVINLIAIEPDEKIQTVLTVSDGKKEG---FLFMATKNGIVKKTHISEFKNL 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IA+ L   DE+L V+    + +I++ T+ G  VRF    +R    R + GV+ I+
Sbjct: 632 RKNGLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAMG-RTASGVKAIN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D  + M I +  +                                           
Sbjct: 691 LKDDDVAVCMDIAVDGE------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L +SE GFGKRT   ++++ NR G G+    +S+  + G L       
Sbjct: 708 ----------ELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICK 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +D+++L++  G  IR+ V +I + +R+  GV +  T +DE+VV++ +I
Sbjct: 756 VDDELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 93/224 (41%), Gaps = 15/224 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       +E  +   +  G VK+  +S ++  R+   G   + ++D D +  + 
Sbjct: 594 EKIQTVLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRK--NGLIALSLKDNDELLKVK 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
                 +++  +  G+  +     +      A G   IN+    + + +   M    D  
Sbjct: 652 NTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINL----KDDDVAVCMDIAVDGE 707

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++  +++G  +R  +S++   NR G   +     ++   +     C  +++++L
Sbjct: 708 E-----LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGATICKVDDELML 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
               G  +R  ++ I V   R+++GV  +   + ++V+++A +L
Sbjct: 763 INSSGVAIRINVADISV-TNRSAMGVTLMRTTEDEKVVAIAKIL 805


>gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1]
          Length = 872

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/905 (40%), Positives = 548/905 (60%), Gaps = 56/905 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K
Sbjct: 3   DSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEM 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  H
Sbjct: 123 KMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG 
Sbjct: 183 NLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G 
Sbjct: 243 YHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+EV
Sbjct: 303 RVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ + 
Sbjct: 363 VTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++D     S                 I +     LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED I
Sbjct: 483 TGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F+
Sbjct: 543 PEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT 
Sbjct: 603 NTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKD--ENSFVFFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +I
Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  + R + GVRG+ +                                    + + E + 
Sbjct: 721 RAMS-RVAKGVRGMRV-------------------------------NLLATTDEEELLD 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
              ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   S
Sbjct: 749 EDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V 
Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866

Query: 894 VERIR 898
           +  + 
Sbjct: 867 MACVE 871



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    D  +    +  + +     +   ++L  ++  +LTVS  G+ K     D+
Sbjct: 506 LMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDY 565

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           +   R GKG  AT + + + I  L      + +  I+  ++ G + R+   EI IASR +
Sbjct: 566 QAQKRGGKGRSATAMKEDDVIEHL---LVTSTHAHILCFTNTGRVFRLRGFEIPIASRGS 622

Query: 878 KG---VVIFSTAKDERVVSVERIRESEIVDE 905
           KG   V + +   DE V ++  +  +++ DE
Sbjct: 623 KGRPLVNLINLESDELVTAILPV--NDLKDE 651



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 19/233 (8%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +   D       V   +  G VKRV LS + A  R G G   + + + D +  + I    
Sbjct: 643 LPVNDLKDENSFVFFATASGTVKRVALSQF-ANLRAG-GLRAIDLAEGDTLIGVAITDGE 700

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKA--LINILSLNQGERIT-----------TI 633
             ++ FS+ G   + K   +   S  A+G     +N+L+    E +             +
Sbjct: 701 QEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETC 690
                   +     ++ A ++G  +R  + D+    R GK  IA+K      +++     
Sbjct: 761 SRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAV 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           T E D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H
Sbjct: 821 TGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEH 872


>gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713]
          Length = 850

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 551/898 (61%), Gaps = 84/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K
Sbjct: 6   NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP H
Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R  
Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM               
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q +AIL++RL RLTGL RD + NE +   + I +  DIL+ 
Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMVAIADYEDILAK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  II +ELL ++++    RRT + V  +L +EDED I  E++VVT++H GY+KR+P
Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     
Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  +IN+L ++  E+I T++  P D+  +   +Y+ F T+ G V+R  +S+F  I ++
Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE+++V       +I++ T  G  V F    IR    R++ GVRGI L  
Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSMG-RSAAGVRGIRLRD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  AI+                                                  
Sbjct: 699 NDYVIGSAILEP------------------------------------------------ 710

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +  +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++
Sbjct: 711 -----ESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   +  + +E T
Sbjct: 764 DIMVITDKGVMIRFNISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821


>gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A
 gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 838

 Score =  774 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/912 (37%), Positives = 513/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+  +D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLVSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190]
 gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 839

 Score =  774 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/917 (38%), Positives = 513/917 (55%), Gaps = 95/917 (10%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+ +  +            I  V I  EMQ SY+ YA++VI+GRA+P + DGLKPVHRR
Sbjct: 1   MTDTLDPTVPPTGGAGGGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M + G   ++ YVKCAR+ GEVMG YHPHG++AIYDAL R+AQ WS+R  LI+GQG
Sbjct: 61  VLYSMGENGFRPDRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTECRL   A  +L D+ ++TVDF  NYDG  QEPVVL +R PN+L
Sbjct: 121 NFGSRGNDPAAAMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV  G V  ++N +   +     LM  I GPDFPT  +I
Sbjct: 181 INGSVGIAVGMATNIPPHNLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI++AY TGRGSI +R V  +E+ +  R  +VVTE+PYQVN   ++E IA +VR+ 
Sbjct: 241 VGRDGIESAYRTGRGSIRMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDG 300

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           ++  IA++ DE SDR G R+V  LKR A A V+LN LY++T LQ+ F VNM+A+    P 
Sbjct: 301 KLTGIAEINDESSDRIGMRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDGVPR 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +++ ++  + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   
Sbjct: 361 TLRLDQVVRNYIRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETV 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + AR+ L+                            + + ++Q +AIL+++L RL  L R
Sbjct: 421 DVARQGLID--------------------------LLDVDDIQAQAILDMQLRRLAALER 454

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I +EL  +  EI +  DIL+   R   I++ EL  + D+    RR+R+V    D+ +E
Sbjct: 455 QKIIDELAEIEREIADYQDILARPERQRQIVRDELTEIVDKHGDERRSRLVADDGDVTNE 514

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +L
Sbjct: 515 DLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGKGVQGATLKQDDIVAHFFVCSTHDWML 574

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP  +  ARG+ + N+L+L   E I  +M   + +++    Y+V 
Sbjct: 575 FFTNKGRVYRLKAYELPEANRNARGQHVANLLALQPDEHIAQVMQIKDYQAA---PYLVL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT+ G V++++L DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  
Sbjct: 632 ATRSGLVKKSRLEDFDSNRSGGLIGINLRDEDELVGAVLCSADDDLLLVSAEGQSIRFTA 691

Query: 711 SAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
               +   GR + GV G+    GD+++S+ +V                            
Sbjct: 692 DDAALRPMGRATSGVLGMRFNDGDRLLSIGVVQD-------------------------- 725

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      ++F+L  +  G+ KRT   D+ +  R GKG+  
Sbjct: 726 ---------------------------DKFVLVATAGGYAKRTPIEDYPVQGRGGKGVLT 758

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
               +    G LV    V  +D++  ++  G +IR    E+R A R TKGV + +   + 
Sbjct: 759 LQYDRR--RGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGDNA 816

Query: 890 RVVSVERIRESEIVDEA 906
            + +V R  E +  D  
Sbjct: 817 TLQAVARNAEDDADDSE 833


>gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
 gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
          Length = 892

 Score =  774 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/898 (43%), Positives = 542/898 (60%), Gaps = 72/898 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+V+E
Sbjct: 246 ASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +VILN LY  T LQ+ F +NMVAL+  +P+ F+L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFSLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+ N+DE++ +I+ +P P+ AR EL+ R W   D+  +++ 
Sbjct: 366 IYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +              G  +L+E Q +AILELRL RLTGL  + I  E   L   I+
Sbjct: 426 AGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIE 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I+ EL +VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+    M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N            I+P  EDE                         
Sbjct: 606 LPLASRTARGKPIVN------------ILPLEEDERITA--------------------- 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                             IL V     +  + + T  G   + P++    F+   S G+ 
Sbjct: 633 ------------------ILPVREYEADKYVFMATADGTVKKTPLTD---FSRPRSAGII 671

Query: 726 GISLAKGDQVISMAIVLHADA------DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            ++L +GD +I + I    D              Y       +  + G       ++   
Sbjct: 672 AVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMK 731

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             EG   +     +   E  +LTV+E G+GKRT+  ++   +R+ +G+ +  VS  N  G
Sbjct: 732 LAEG--DKVVSLIVPHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN--G 787

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++V      D D+ +++++ GTL+R  V E+    R T+GV +  TA++E VV ++RI
Sbjct: 788 SVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEEELVVGLQRI 845



 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 113/282 (40%), Gaps = 23/282 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+              +  V   +  G VK+ PL+ +   R    G   V +R+
Sbjct: 627 DERITAILP-------VREYEADKYVFMATADGTVKKTPLTDFSRPRSA--GIIAVNLRE 677

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGK--ALINILSLNQGER 629
            D +  + I ++   ++ FS  G V  + E       G  +  G+  A +  + L +G++
Sbjct: 678 GDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMKLAEGDK 737

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILS 686
           + +++         N   V+  T++G  +R  L+++   +R+  G +++K+      ++ 
Sbjct: 738 VVSLIV------PHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVG 791

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                  ++ ++ T  G  VR  ++ +    GRN+ GV  I  A+ + V+ +  +   + 
Sbjct: 792 AVQAEDGDEFMMITNGGTLVRTRVAEV-SRVGRNTQGVTLIRTAEEELVVGLQRIDELEV 850

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              E    +    A       DT+     + DS  +    EE
Sbjct: 851 VELEEDAIVDGEIAVDGEQVVDTDAAQQPEADSEQDEATDEE 892



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +     +   ++L  +E  ++T+S +G+ K     D+    R GKG  AT +   + I
Sbjct: 518 TEITAASHDIDLEDLITQEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFI 577

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
             L+     N +D I+  S +G +  + V ++ +ASR  +G   V I    +DER+ ++ 
Sbjct: 578 ERLLVA---NTHDTILCFSSRGRMYWLKVYQLPLASRTARGKPIVNILPLEEDERITAIL 634

Query: 896 RIRESEIV 903
            +RE E  
Sbjct: 635 PVREYEAD 642


>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 824

 Score =  774 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/899 (41%), Positives = 543/899 (60%), Gaps = 85/899 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  I   + E   +  V I DEM+ SY+ Y+++VI+GRA+PD RDGLKPVHRRIL  M +
Sbjct: 11  DEKIEQHDGEGGRVVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNE 70

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  +K Y K AR+ G+V+GK+HPHG+ A+YD+L RM QD+SLR  LI+GQGNFGSVDG
Sbjct: 71  AGITHDKAYKKSARVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDG 130

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K    +L+D+ K TVDF+PNYDGS +EP VL ++ PN+L+NG  GI
Sbjct: 131 DSAAAMRYTEVRMDKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGI 190

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEVVD  V +ID+P+ +L  L +I++GPDFPTG +I+G +GIK+AY 
Sbjct: 191 AVGMATNMAPHNLGEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGTSGIKSAYE 250

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGR  I +R V+ IE+   D+ +IVV E+PYQVNKA ++E IA LVR+K+I  I+DLRDE
Sbjct: 251 TGRSPIYLRAVTEIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDE 310

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R+G RVVIELK+ A+  V+LNQLY+ T L++ F +  +AL    P    L  +++ ++
Sbjct: 311 SGREGMRVVIELKKAANPKVLLNQLYKQTQLETTFGIINLALVDGVPRVLNLRELIQIYL 370

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+ RRT + L KA +RAH+L GL +A+ N+DEV+++IR S   E AR  L+    
Sbjct: 371 KHRIDVISRRTVFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLISN-- 428

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L E+Q +AIL+++L RLTGL R  I  E N L  
Sbjct: 429 ------------------------FDLDEIQAKAILDMKLQRLTGLERQKIDEEYNGLID 464

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL++  R   II+ E+L +KD+    RRT I     ++ DED I  E++VVT 
Sbjct: 465 TIADLKDILANDERKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVVVTS 524

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+K +PL  Y  Q RGG+G  G+  +++D V  +F+ STH  +LFF++ G VY +K
Sbjct: 525 TQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVGSIFVASTHDYILFFTNRGKVYWQK 584

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P GS Q+RGKA++N+L L +GE +  ++P  + E   N+ Y+   T+ G V+R  L
Sbjct: 585 VYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHDFE---NDRYLFMGTRDGTVKRCSL 641

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF    ++G IA+ L   DE+++V       DI+L ++ G+ +R     +RV   R + 
Sbjct: 642 SDFSNPRKAGIIAISLKEGDELVNVLQTDGNQDIMLASRHGKALRISEEDVRVMG-RTAR 700

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ LA  D ++S+ +V                                         
Sbjct: 701 GVRGMKLAGPDVIVSLDVVDSDG------------------------------------- 723

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +LTV+E GFGKRT   ++R   R G+G+        N  G +V
Sbjct: 724 ----------------TLLTVTENGFGKRTPFDEYRTLRRGGQGVITIFTDMRN--GPVV 765

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V  V D+D+IIL S  G ++R+PV +IR+  R TKGV I +  + +++VS+ RI++ E
Sbjct: 766 TVKTVEDDDEIILTSSAGIVMRIPVTDIRVQGRNTKGVKIMNIREKDKLVSLARIKKEE 824



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++   AD  + +   +   A  R    + ++    +  + ++ +  E   ++L  +E+ +
Sbjct: 462 LIDTIADLKDILANDERKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVV 521

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T ++ G+ K      + + +R G+G+R  +  + + +G   ++F  + +D I+  +++G
Sbjct: 522 VTSTQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVG---SIFVASTHDYILFFTNRG 578

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            +    V +I   SR ++G   V +   A+ E V ++  + + E  
Sbjct: 579 KVYWQKVYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHDFEND 624


>gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92]
 gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054]
 gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17]
 gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
 gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
          Length = 838

 Score =  774 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/912 (37%), Positives = 512/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L K  +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
 gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
          Length = 816

 Score =  774 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/897 (41%), Positives = 547/897 (60%), Gaps = 86/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     +  V I +EM+ +YL YA++VI+ RA+PD+RDGLKPV RRIL+ +  +G+  NK
Sbjct: 4   DINNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ GEV+GKYHPHG+ A+YD + RMAQ++S R  L++G GNFGS+DGD  AA R
Sbjct: 64  PHKKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +    LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGM+TN
Sbjct: 124 YTEVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG VA+IDNPD+++  LM+II+GPDFPTG +I+G+  I  AY TGRG + 
Sbjct: 184 IPPHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLK 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    + +I++TEIPYQVNKA ++EKIA LVR+++I  I+DLRDESDR+G R
Sbjct: 244 VRGKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+G    VILN+LY+YT LQ  + V M+AL    P   TL  +L  ++  ++EVV
Sbjct: 304 IVIELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKY L+KA  RAH+L GL IA+AN+D++V++IR +P+ +TARR L++          
Sbjct: 364 TRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIEN--------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  AIL +RL RLTGL RD I  E   L  +I     
Sbjct: 415 -----------------FNLTEKQAEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRS 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +LLGIIK ELL +K++    RRT I    +D++ ED I  E +V+T++H GY+K
Sbjct: 458 ILADEGKLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVVITLTHHGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+ +YR+QRRGGKG  G+  ++EDFV  +F  STH   LFF++ G VY+ +V+ +P  
Sbjct: 518 RMPIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQA 577

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S QARG A++N+L L + ERITT++P  E +      Y+V  T++G +++  L+++    
Sbjct: 578 SRQARGTAIVNLLELEEEERITTVIPIREFDEE---RYLVMVTRNGMIKKTPLAEYES-R 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G I + L   DE++ V+       +++ T  G+ + F  + +R    R ++GV+ I+L
Sbjct: 634 YTGLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSMG-RTAMGVKAITL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD V+ M +                                                 
Sbjct: 693 EDGDYVVGMGV------------------------------------------------- 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +   +L ++EKG+GKRT   ++R+ +R GKG+   ++++ N  G L  V  V +
Sbjct: 704 ----DSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN--GNLAGVKVVRE 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +  +IL++ +G +IR  V  I    R T GV +    + +RVVS+ RI   E   E 
Sbjct: 758 DHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEKDIEE 814


>gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97]
 gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
          Length = 838

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/912 (37%), Positives = 512/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+ F      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTAFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
 gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
          Length = 872

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/900 (41%), Positives = 538/900 (59%), Gaps = 40/900 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ      L  D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG VAVI NP+I    LM+ I GPDFPTGA ILG   IK AY TGRGSI +R
Sbjct: 185 PHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGMGAIKEAYTTGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV++IE        DRE I++TE+PYQ NKAA++EKIAELV EKRI  IAD+RDESDR G
Sbjct: 245 GVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  TL   L  F+ FR E
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRIE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+++LD ++ +IR + +  TA+ EL+         
Sbjct: 365 SITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELIT-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSEVQ  AIL+++L RLT L  D IR E   L  +I + 
Sbjct: 417 ------------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ E+  +K    TPRRT I     ++++ D I  E  ++ ++  GY
Sbjct: 459 QDILARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G++   ++D+D +        H SVLFFS  G VY  K +++P
Sbjct: 519 IKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++ +L+ F  
Sbjct: 579 VSSRTSRGTPIVQLLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTELAAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V     E+ I++ ++LG  + F  +  ++   GR + GV+ 
Sbjct: 636 IRANGLIAISLEEGDQLRWVRRARVEDSIIIGSRLGMAIHFRCTHEQLRPLGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L KGD+++ M I+  A  D                + + D E             N+ 
Sbjct: 696 MKLKKGDELVGMDILPAAILDTLN-----TEEPDIDDIETEDIETAVETTEVLETLENLE 750

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +  
Sbjct: 751 AVEVSSNASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATLGI 810

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN +++I++V+++G +IR  VN I I SR+  GV +    +D+ +  V  +      +E 
Sbjct: 811 VNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDTGDEEE 870


>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
 gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
          Length = 826

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/897 (40%), Positives = 537/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+++YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ NK +
Sbjct: 2   QREKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EVV G +A+ID+P+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PHNMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR+G R+
Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN A  RAH+L GL I + NLDEV+  IR SP+  TA+  L+ R          
Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDR---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ +AILE+RL RLTG+ R  I +E       I+E   I
Sbjct: 412 ----------------FGLTEVQAKAILEMRLQRLTGMERQKIDDEYKQTMALIEELKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S ++ + IIK+ELL V +     RRT +     D   ED I +ED+V+T++H G++KR
Sbjct: 456 LASPAKQMEIIKEELLKVSEVYGDERRTEMRPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G +G   ++EDF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I T +     +   +  +++ AT +G V++  L  +    R
Sbjct: 576 RSARGRSLANIMELPPGEKIRTYINIRNFD---DPHFIIMATANGIVKKTDLKQYSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       ++ ++L    G  VRFP S +R    R ++GV+GI+L 
Sbjct: 633 TGINAITIEEGDELIEARLTDGDHQVILAKSSGYAVRFPESEVRSMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + ++ ISM      D                                             
Sbjct: 692 EAERCISMVTTKRNDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ G+GKR+   D+R++ R  +G+      +  +IG LV +  VND 
Sbjct: 709 ---------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHE--KIGNLVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++  G +IR  V++IR+  R T GV +      +R+ +  R+ +S+    +E
Sbjct: 758 DDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDEPTSE 814



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 14/234 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +    +         ++  +  G VK+  L  Y   RR   G + + + + D + +  
Sbjct: 593 EKIRTYINIRNFDDPHFIIMATANGIVKKTDLKQYSNPRRT--GINAITIEEGDELIEAR 650

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+   S G+  +     +      A G   +  ++L++ ER  +++      +
Sbjct: 651 LTDGDHQVILAKSSGYAVRFPESEVRSMGRTAMG---VKGITLDEAERCISMVT-----T 702

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILL 698
             N+  ++  T +G  +R+K+ D+    R   G I +K   +   ++ +     E+D+++
Sbjct: 703 KRNDTSLLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHEKIGNLVGLLDVNDEDDLII 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            T  G  +R  +S IRV   RN+ GVR I L  GD++ + A V  +D +     
Sbjct: 763 ITTNGIVIRQHVSDIRVLG-RNTSGVRLIRLDAGDRISATARVPKSDDEPTSEP 815


>gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207]
 gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475]
 gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207]
          Length = 838

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/912 (37%), Positives = 512/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY T RGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 833

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/892 (43%), Positives = 552/892 (61%), Gaps = 84/892 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++   SV+I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G E+NK Y 
Sbjct: 4   QQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +H LL D+ K+TVDF PNYD S  EP+VL  ++PN+LVNG  GIAVGMAT IP 
Sbjct: 124 VRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV++G V++ID+P +  + L++II GPDFPT   ILG   ++ AY TGRG I +R 
Sbjct: 184 HNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFILGHEDVQEAYRTGRGIIQMRA 243

Query: 253 VSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + +E      RE IV+ EIPYQVNKA ++EKIA L++EK+I  I+DLRDESDR G R+V
Sbjct: 244 KAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKR A A V+LNQLY+ T++QS F + M+A+ G +P+  TL  +L  F+  R+E+V R
Sbjct: 304 IDLKREAVAGVVLNQLYKMTAMQSSFGIIMLAIVGGQPKILTLREVLDQFIDHRKEIVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L KA  RAH+L GL IA+ NLDE+++II+ S N + A+  L++R           
Sbjct: 364 RCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIER----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S++Q +AIL++RL RLTGL RD I NE N +  +I    +IL
Sbjct: 413 ---------------FTFSDIQAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S   +L II+ EL+ VK+  D PRRT I+    D+  ED IV EDMVVTVSH GY+KR 
Sbjct: 458 GSEVEILKIIRAELIEVKENYDDPRRTEIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKRN 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +S+YR+QRRGGKG++G+  ++EDFV  LFI STH+ +L F+  G VY  KV  +P G  
Sbjct: 518 AVSLYRSQRRGGKGKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARGKA++N+L L   ER+ TI+P  E      + Y++ ATK+G V++ +L  +    + 
Sbjct: 578 AARGKAIVNLLQLAPEERVMTILPVKE---FVEDKYIIAATKNGVVKKTELMAYANPRQG 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G I+M +D  D +++        D+LL +  G+ +RF  + +R    R + GVRG+ L  
Sbjct: 635 GIISMTIDEGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRPMG-RTARGVRGMQLEG 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D +I M +V    +                                             
Sbjct: 694 DDTIIGMEVVNDNTS--------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +++V+E G+GKRT+  ++R+ +RSGKGI     S  N  G +V +  V D +
Sbjct: 709 ------ASLVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRN--GYVVDIKLVTDEE 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++ ++D+G ++R  V  + I  R T+GV +     DER+V+V ++ E E  
Sbjct: 761 DLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVAKLAEKEEE 812


>gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
 gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
          Length = 838

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/912 (37%), Positives = 513/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+  +D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
 gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
          Length = 838

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/912 (37%), Positives = 513/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+  +D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
 gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
          Length = 814

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/906 (41%), Positives = 550/906 (60%), Gaps = 97/906 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ K+TVDF PN+D + +EP VL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +ID+      +  ++ +++II+GPDFPTGA+ILG  
Sbjct: 174 GIAVGMATNIPPHNLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S+R+G R+ IEL+R  +A+VILNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSNREGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ 
Sbjct: 354 DMLNYYLKHQEEVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                             L+EVQ +AI+++RL  LTGL R+ +  
Sbjct: 414 GLIE--------------------------AFELTEVQAQAIVDMRLRALTGLEREKLET 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+ R  LLG+IK+E+L +  +    RRT I     D+  ED I R
Sbjct: 448 EYAELMKRIGELKAILADRKLLLGVIKEEILIIDGKYSDERRTSIGFDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+V+T++ LGY+KR+ +  +++Q RGGKG  G+   DED+V +LF+ STH  ++FF++ 
Sbjct: 508 QDVVITMTKLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  ARG A+IN+L L   E+IT ++P  E +      Y+  ATK G
Sbjct: 568 GRVYRLKGYEIPEASRTARGTAIINLLQLMPDEKITAMIPIDEYKE---GQYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++D+  + ++G  A+ L   DE++ V+   Q+ DI+L TK GQC+RF    +R 
Sbjct: 625 LVKKTPITDYANVRKTGLAAITLREEDELIEVKFTDQDQDIILVTKYGQCIRFNEKDVRA 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++LA  D+V+ M +                                   
Sbjct: 685 -TGRTSMGVRGMNLADRDEVVGMQL----------------------------------- 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +   +L VSEKG GKRT+  +F   NR GKG++   +++ 
Sbjct: 709 ------------------HTQGTHLLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  VN++++I++++ +G +IR+  N I +  R T GV + +   +  V S+ 
Sbjct: 750 -KTGNVVGVKAVNEDNEIMIINTEGIVIRMECNSISVLGRITSGVKLINLNDNATVASIA 808

Query: 896 RIRESE 901
           ++RE+E
Sbjct: 809 KVRETE 814


>gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 875

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/916 (39%), Positives = 520/916 (56%), Gaps = 95/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +      E   I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MTETLPP----EHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WSLR  LI+GQGNFGS 
Sbjct: 57  FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSS 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDFR NYDG  QEP VL +R+PN+LVNGG 
Sbjct: 117 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  ++NP+   D L+      I+GPDFPT A+ILG +G
Sbjct: 177 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  +E+ +  R  +VV+E+PYQVN   ++E IA LVR+ +I  I
Sbjct: 237 IEDAYRTGRGSIRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+ DES+ R G R+VI +KR A A V+LN L+++T LQ  F VNM+AL    P    L 
Sbjct: 297 ADIADESNSRSGMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDDVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +V  + +V+VRRT++ L KA +RAH+L GL  A+  LDEV+ +IR SP+ + AR 
Sbjct: 357 QIIRHYVKHQVDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARP 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+++L RL  L R  I +
Sbjct: 417 GLMS--------------------------LLEIDEIQATAILDMQLRRLAALERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            L  + +EI +  DIL    R   II+ EL+ + D+    RRT+I+    D+  ED I +
Sbjct: 451 TLAEIELEIADLKDILEKPERQRSIIRDELMEIVDKYGDDRRTQIIPFDGDVSVEDLIAQ 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 511 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I  ++  P  E +    Y+V ATK G
Sbjct: 571 GRVYRAKAYDLPEANRNARGQHVANLLAFQPDEQIAQVIEIPNYEVA---PYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ KL+DF      G IA+ L   DE++       E+D+LL +  GQ +RF  +   +
Sbjct: 628 LVKKTKLTDFDSNRAGGLIAINLREGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEAL 687

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+    GD+++ +++V                                 
Sbjct: 688 RPMGRPTSGVLGMRFNDGDELLGISVVKP------------------------------- 716

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 ++F+L  ++  + KRT   D+ +  R GKG+       
Sbjct: 717 ----------------------DKFLLVATDGAYAKRTPIEDYPVQGRGGKGVLTIQHD- 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ G LV    V+++D++  ++  G +IR P  ++R A R TKGV + +      +++V
Sbjct: 754 -SKRGRLVGALIVDEDDELFAITSSGGVIRTPARDVRKAGRQTKGVRLMNLGDGTTLLAV 812

Query: 895 ERIRESEIVDEAESTE 910
            R    E  D A   E
Sbjct: 813 ARNA-DEGSDVANGGE 827


>gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 897

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/891 (43%), Positives = 559/891 (62%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL DL KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G +++  NPDI +  LME I+GPDFPT  +ILG++GI+ A+ TGRGSI 
Sbjct: 183 IPPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIILGKSGIRRAFETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTE+PYQVNKA M+EKIAEL R+K+I  I DLRDE+  R G 
Sbjct: 243 LRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A V+LN LY+ T LQ+ F VNM+AL   +P+  +L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKDALVEYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA DRAH+L GL IA+ ++DE++R+IR S N + A   L ++        
Sbjct: 363 VRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQ-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I+E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL I++ EL+ V++     R+T I + GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 SILADEEKLLQIVRDELIDVRERYGDERKTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+  E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVVNAIELDNDESISTMIAVKDLESEED--YLVFATQKGRVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     E DIL+ T     +RFP +A+R    R + GV+GI
Sbjct: 635 INKNGKIAISFKQDDELIAVRLTDGETDILIGTSHASLIRFPETALRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+V+ + +      D                                        
Sbjct: 694 TLREDDKVVGLDVTKAESDD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERN--GNVVCITSV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +    +++ V +V ++ 
Sbjct: 761 TGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKVN 811



 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 98/242 (40%), Gaps = 16/242 (6%)

Query: 669 NRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            ++      LD   DE    +   +E  ++  +      R P+S  R    R   GV+G+
Sbjct: 484 RKTEIQLGGLDDIEDE----DLIPEEQIVITLSHNNYIKRLPVSTYRA-QHRGGRGVQGM 538

Query: 728 SLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +  + D V  +  +   D         R+  +K               + +     + E 
Sbjct: 539 NTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELDNDES 598

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             +    ++L+ +E +++  ++KG  KR++  +F   N++GK   +           L+A
Sbjct: 599 ISTMIAVKDLESEEDYLVFATQKGRVKRSALSNFSHINKNGKIAISFKQDDE-----LIA 653

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V   +    I++ +   +LIR P   +R   R   GV   +  +D++VV ++ + ++E  
Sbjct: 654 VRLTDGETDILIGTSHASLIRFPETALRPLGRTAAGVKGITLREDDKVVGLD-VTKAESD 712

Query: 904 DE 905
           DE
Sbjct: 713 DE 714



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 105/259 (40%), Gaps = 15/259 (5%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ED +V  +  G VKR  LS +        G+  +  + +D +  + +    
Sbjct: 603 IAVKDLESEEDYLVFATQKGRVKRSALSNF--SHINKNGKIAISFKQDDELIAVRLTDGE 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
           T +L  +S   + +     L      A G   +  ++L + +++  +    +   + ++ 
Sbjct: 661 TDILIGTSHASLIRFPETALRPLGRTAAG---VKGITLREDDKVVGL----DVTKAESDD 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            ++  T++G  +R  + D+   NR GK    A   +    ++ + + T E D+++ T  G
Sbjct: 714 EILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERNGNVVCITSVTGEEDLMVVTNSG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR- 762
             +R  +  I     R + GVR I L +   V ++A V   D    E             
Sbjct: 774 VIIRIDVEDISQNG-RAAQGVRLIKLGENQFVSTVAKVNEEDEAETETEAIASDSENTDA 832

Query: 763 -RLISGDTEEITSLKNDSS 780
              ++ D+++  ++  D +
Sbjct: 833 TEQMAQDSQQGEAVIEDDA 851


>gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
 gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
          Length = 873

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/899 (41%), Positives = 547/899 (60%), Gaps = 86/899 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R    R++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMG-RSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDD 816


>gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
 gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
          Length = 848

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/887 (46%), Positives = 614/887 (69%), Gaps = 44/887 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K + + +I+DEM++SYL+YA++VI+ RA+PD RDGLKPVHRRI++ M + G +W+K++ K
Sbjct: 4   KNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQFRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+   L+EGQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYTET 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K + FL+ D+ K+TV+F+ NYD +  EPVVL A++PN+LVNG GGIAVGMATNIP H
Sbjct: 124 KLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG +A +DN  I +  +M+ I GPDFPTG +ILG+  IKN Y  GRGSI IRG 
Sbjct: 184 NLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIILGKNEIKNGYEKGRGSIKIRGE 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+ S DR+ I++  +PYQVNK  ++EKIA L+R+K++  IADLRDES+++G R+VIE
Sbjct: 244 IEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIVIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++G + ++I+NQLY+++ L+S F  N +A+N  KPE   L   ++ FV+FRE+ +++RT
Sbjct: 304 LRKGVNQEIIINQLYKFSPLESSFGFNTLAINEKKPELLNLKQFIEIFVSFREKTIIKRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA+DR+H+L+GL IA+ N+DE++ IIR S  P  A+  L++++WN    K   ++
Sbjct: 364 LFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSKLNKNI 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           ++ +   +       LS+ Q +AIL+LRL +LT +G D+I NEL+ L   I +   IL+ 
Sbjct: 424 LNINE--LSDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKILND 481

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           ++ L+ +IK EL+ +K++  TPR+T+IV+ +  +E ED I +E ++VTV++ GY+KR P+
Sbjct: 482 KTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKRTPI 541

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           +  +AQ+RGG+G+ G+V R+EDFVT LF V+T T VLFFS+ G VYK K W++P GS Q+
Sbjct: 542 TNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEGSNQS 601

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GK+L N+L ++    +++IMP PE+E+ W++L +VF TK G +R+N L DF  I  +GK
Sbjct: 602 KGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNLEDFKNIQSNGK 661

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKLD  DEI+SV+      D+++ +  G+ +R     IR+F GR+S GV+G++L   D
Sbjct: 662 IAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSKGVKGMNLKNND 721

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VIS++I+       D+                                         E+
Sbjct: 722 RVISLSILNPNIISSDK----------------------------------------DEM 741

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K KE+FILT++E G+GKR+S+Y+FR + R G+GI     ++ N  G + A FP+  +D I
Sbjct: 742 KSKEEFILTITENGYGKRSSAYEFRETGRGGQGIINISTTERN--GNVAASFPIKSDDDI 799

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +LV+ KG +IRV VNEIR+A R T+GV IF T+ DE+VV+  R+ ++
Sbjct: 800 MLVTSKGQMIRVKVNEIRVAGRNTQGVRIFKTSSDEKVVTAVRLADN 846



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S    + +   I+    +++  KEQ I+TV+ KG+ KRT   + +   R G+G       
Sbjct: 501 STPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKRTPITNIKAQKRGGRGKIGIVTR 560

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDER 890
           + + +  L +V  +     ++  S+KG + ++   +I   S  +KG  + +         
Sbjct: 561 EEDFVTQLFSVNTLTP---VLFFSNKGIVYKLKTWKIPEGSNQSKGKSLHNLLPIDNQSY 617

Query: 891 VVSVERIRESEIV 903
           V S+  + E+E  
Sbjct: 618 VSSIMPLPENENE 630


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/852 (45%), Positives = 539/852 (63%), Gaps = 26/852 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVVTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L + ERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPQASRTARGKPIVNILPLEENERITAILPVSE---FSPEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ LA  DQV+S+ +      +L    +   +   +     + R   G      S +N S
Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGS 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V     EE           ++ +++ G   RT   +     R+ +G+     ++   + 
Sbjct: 782 VVGAVQVEE--------GDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVV 833

Query: 840 ALVAVFPVNDND 851
            L  +  V ++D
Sbjct: 834 GLQRIDEVEESD 845



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 165/441 (37%), Gaps = 39/441 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+       E ++   K LL +  +  H+L      +  + E +  +R       ARR  
Sbjct: 462 LQKLTGLEHEKILDEYKQLLEEIAELMHILASTERLMEVIREELEAVR--DGFGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAAIHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    + +   +K  +L    RT     IV        E +
Sbjct: 575 ----DYIERLLVANTHDNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEENERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +        E  +   +  G VK+  L  + A  R   G   V +R++D +  + I  
Sbjct: 631 TAILPVSEFSPEKFIFMATGDGTVKKTSLDQF-ANVRS-NGLIAVNLREDDSLIGVDITD 688

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
             + ++ FS  G V +    ++      A G   +  + L   +++ +++         N
Sbjct: 689 GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAG---VRGMKLADDDQVVSLIV------PSN 739

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
              ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T 
Sbjct: 740 EGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGSVVGAVQVEEGDEMMMITD 799

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  ++ +     RN+ GV  I  A+ + V+ +  +   +         ++    +
Sbjct: 800 AGTLVRTRVAEVSQVG-RNTQGVTLIRTAEDENVVGLQRIDEVEESDLPEGEELEGQEGE 858

Query: 762 RRLISGDTEEITSLKNDSSVE 782
               + ++     +  D+  +
Sbjct: 859 VSEAAPESTPDAEVDTDADEQ 879


>gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
          Length = 831

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/903 (39%), Positives = 519/903 (57%), Gaps = 94/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +      E   I  V I  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPP----EHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVKC+R+ G+VMG YHPHG+++IYD L R+AQ WS+R  LI+GQGNFGS 
Sbjct: 57  YDSGYRPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL AR PN+LVNGGG
Sbjct: 117 GNDPAAAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV DG V  ++NP+ D +AL+    E I+GPDFPT  +I+G   
Sbjct: 177 GIAVGMATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGTNA 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V  +E+ +  R  +VVTE+PYQVN   ++E IA + RE ++  I
Sbjct: 237 IADAYRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DES+ R+G R+VI LKR +   V+LN LY++T LQ  F VNM+AL    P    L 
Sbjct: 297 SDIADESNSRRGMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALVEGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 357 QVIRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDART 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + EVQ  AILE++L RL  L R  I +
Sbjct: 417 GLIE--------------------------LLEVDEVQANAILEMQLRRLAALERQKIVD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI++  DIL    R   II+ EL+++ D+    RRTRIV    ++  ED I  
Sbjct: 451 QLAEIEREIEDLKDILDKPERQRQIIRDELMAIVDKHGDDRRTRIVPHEGEVSMEDLIAD 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 511 EDVVVTLTRTGYAKRTRTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E I  +M   +  ++    Y+V AT++G
Sbjct: 571 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEHIAQVMQIKDYTAA---PYLVLATRNG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  S   +
Sbjct: 628 LVKKSRLTDFDSNRSGGLIGVNLKDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEAL 687

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+   +GD++++M +V                                 
Sbjct: 688 RPMGRATSGVLGMRFNEGDELLAMGVVRP------------------------------- 716

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 ++++L  ++ G+ KRT   D+ +  R GKG+      +
Sbjct: 717 ----------------------DRYVLVATDGGYAKRTPIDDYPVQGRGGKGVLTIQYDR 754

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V+ +D++  ++  G +IR    E+R A R TKGV + +      VV+V
Sbjct: 755 --KRGRLVGALIVDVDDELYAITSTGGVIRTTAKEVRKAGRQTKGVRLMNLGDGTSVVAV 812

Query: 895 ERI 897
            R 
Sbjct: 813 ARN 815


>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
 gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
          Length = 830

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 551/899 (61%), Gaps = 83/899 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            I   + +  + I+ V I +EM+ SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M + 
Sbjct: 14  EIDVQETDTGEDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMKEA 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+ ++K Y K AR+ G+V+GK+HPHG+ A+YD+L RM Q++S+R  L++GQGNFGS+DGD
Sbjct: 74  GITYDKPYKKSARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSIDGD 133

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R++K +  +L D+ K+TV F+PNYDG+  EP VL A+ PN++VNG  GIA
Sbjct: 134 SAAAMRYTEVRMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTGIA 193

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNL EV DG + +IDNPD+ +  L   I+GPDFPT   ILG  GIK+AY T
Sbjct: 194 VGMATNIPPHNLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGTEGIKSAYET 253

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I IR V+ IE+   D+ +IVV+E+PYQVNKA ++E IA LVR+K+I  I+DLRDES
Sbjct: 254 GRGRIKIRSVADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRDES 313

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIEL R  + +VILNQLY++T LQ  + +  +AL    P+   L  +L+ ++ 
Sbjct: 314 DREGIRIVIELARNTNPNVILNQLYKHTQLQVTYGIINLALVDGVPKVLNLYELLQIYLN 373

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +V+ +R++Y L KA +RAH+L GL I + NLDEV+  IR S     A+  L+++   
Sbjct: 374 HRMDVIQKRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEK--- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L E Q +AIL++RL  LT + +D I +E N L  +
Sbjct: 431 -----------------------FQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELVEK 467

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I +  +I++S SR   IIK EL  +K+     RRT I     ++ +ED I  ED+++T++
Sbjct: 468 IADLKEIIASDSRKYNIIKDELTELKENYADERRTDIQSSDEELSEEDLIPEEDVLITIT 527

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GY+KR+P++ Y  Q RGG+G +G+ ++D+DFV D+F+ ST   +L F++ G V  +KV
Sbjct: 528 NSGYIKRLPVTTYSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKV 587

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P GS Q+RGKAL+N+  L   E +++++   E    WN   ++ ATK+G V++  LS
Sbjct: 588 YEIPQGSKQSRGKALVNLFELENDEAVSSMITVKEFSDDWN---LLMATKYGTVKKTPLS 644

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F    +SG IA+ L+  DE+++V     +NDI+L +  G+ +RF  + +R    R + G
Sbjct: 645 SFKTRKKSGLIAINLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPMG-RAAQG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L   D++ISM  +   +                                      
Sbjct: 704 VRGIRLNPDDRIISMDTISDDE-------------------------------------- 725

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +LT+++ G+GKRT   ++R  NR G+G+    ++  N  G +V 
Sbjct: 726 -------------NAKLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRN--GPVVN 770

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           V  V D+D I++ S +G +IR+PV +IR+  R T+GV I +  ++++V+ V RI++ + 
Sbjct: 771 VKTVRDDDDIVVTSYQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKKDDD 829



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/230 (22%), Positives = 113/230 (49%), Gaps = 15/230 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M        +  ++  +  G VK+ PLS ++ +++   G   + + + D + ++ 
Sbjct: 612 EAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSFKTRKKS--GLIAINLNENDELVNVI 669

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  SS G   +     +      A+G   +  + LN  +RI ++    +DE 
Sbjct: 670 LTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQG---VRGIRLNPDDRIISMDTISDDE- 725

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDIL 697
              N  ++  T++G  +R K  ++ ++NR G+    I M   +   +++V+T   ++DI+
Sbjct: 726 ---NAKLLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRNG-PVVNVKTVRDDDDIV 781

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +T+  G  +R P+  IRV  GRN+ GV+ +++ + D+VI +A +   D +
Sbjct: 782 VTSYQGLVIRIPVKDIRV-QGRNTQGVKIMNMRENDKVIGVARIKKDDDN 830


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/898 (41%), Positives = 553/898 (61%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  + S+ I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 4   NEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEKGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G++GI+ AY TG+G I++R
Sbjct: 184 PHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIMGKSGIRAAYETGKGRIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE    +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+V
Sbjct: 244 AKAEIE-EENNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ +VILN LY++T +Q  F V M+AL   +P+   L  +L  ++ F++EVV R
Sbjct: 303 IELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNEPQVLNLKQVLANYIEFQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AILE+RL RLTGL RD I  E   L   I     IL
Sbjct: 412 ---------------FQLSEKQAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  +LL +IK EL+ +K+  +  RRT I + + D++ ED I  E++V+T++H GY+KR+
Sbjct: 457 ASEEKLLSVIKDELIEIKNRYNDERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGG+G   +  +++DFV  + +VSTH+ VLFF++ G VYK + + +P    
Sbjct: 517 SADTYSSQRRGGRGIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN++++ Q E+I T++   +D    N  ++   TK G V++  LS+F  + ++
Sbjct: 577 TAKGTNIINLIAIEQDEKIETVLSVKDD---VNEGFLFMGTKQGLVKKTPLSEFKNLRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L V+    + DI++ T+ G  +RF  + +R    R + GVR I+L K
Sbjct: 634 GLIAINLRDGDELLKVKITRGDADIVIVTQDGNAIRFNETDVRPMG-RTASGVRSINLRK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  + M I +  +                                              
Sbjct: 693 DDIAVCMDIAVEGED--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE GFGKRT   +++   R G G+    +S+  + G ++       +D
Sbjct: 708 --------LLVISENGFGKRTPITEYKRQKRGGTGLITYKLSE--KTGKVIGATICKIDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++  G  IR+ V++I + SR+T GV +  T ++E++ ++ +I  S    E + T
Sbjct: 758 ELMLINTSGVAIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDKEEQLT 815


>gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
 gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
          Length = 826

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/897 (41%), Positives = 533/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K Y
Sbjct: 2   QREKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL A  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EVV G +A+I+NP+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PHNMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR+G R+
Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN A  RAH+L GL I + NLDEV+  IR SP+   A+  LM R          
Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDR---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q++AILE+RL RLTG+ R  I +E       I+E   I
Sbjct: 412 ----------------FGLTEAQSKAILEMRLQRLTGMERQKIDDEYRETLALIEELKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S ++ + IIK ELL V D     RRT +     D   ED I +ED+V+T++H G++KR
Sbjct: 456 LESPAKQMEIIKAELLKVSDVYGDERRTELRPQEGDFSIEDMIAQEDVVITITHEGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G +G   ++EDF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I T +     +   +  +++ AT  G V++  L ++    R
Sbjct: 576 RAARGRSLANIMELPPGEKIRTYINVRNFD---DPHFIIMATAKGIVKKTSLEEYSHPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D  DE++       ++ I+L    G  VRFP S +R    R ++GV+GI+L 
Sbjct: 633 TGINAITIDEGDELIEARLTDGDHQIILAKSSGYAVRFPESEVRSMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + ++ ISM      D                                             
Sbjct: 692 EDERCISMVTTKRNDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ G+GKR+   D+R++ R  +G+      +  +IG LV +  VND 
Sbjct: 709 ---------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHE--KIGNLVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++  G +IR  V++IR+  R T GV +      +R+ +  R+ +S+     E
Sbjct: 758 DDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDDSATE 814



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 14/234 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +    +         ++  +  G VK+  L  Y   RR   G + + + + D + +  
Sbjct: 593 EKIRTYINVRNFDDPHFIIMATAKGIVKKTSLEEYSHPRRT--GINAITIDEGDELIEAR 650

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++   S G+  +     +      A G   +  ++L++ ER  +++      +
Sbjct: 651 LTDGDHQIILAKSSGYAVRFPESEVRSMGRTAMG---VKGITLDEDERCISMVT-----T 702

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILL 698
             N+  ++  T +G  +R+K+ D+    R   G I +K   +   ++ +     E+D+++
Sbjct: 703 KRNDTSLLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHEKIGNLVGLLDVNDEDDLII 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            T  G  +R  +S IRV   RN+ GVR I L  GD++ + A V  +D D     
Sbjct: 763 ITTNGIVIRQHVSDIRVLG-RNTSGVRLIRLDAGDRISATARVPKSDDDSATEP 815


>gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14]
          Length = 849

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/915 (39%), Positives = 555/915 (60%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ K+TVDF PN+D + +EP VL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +ID+   D     ++ ++EI++GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S+R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   L+
Sbjct: 294 ITDLSDQSNREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVDNQPKVMNLL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++  +E+VV RRT+Y LNKA++RAH+L GL IA+ N+DEV+RIIR S N + A+ 
Sbjct: 354 EMLQYYLRHQEDVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL++R                            LS+VQ +AI+++RL  LTGL R+ I  
Sbjct: 414 ELIKR--------------------------FGLSDVQAQAIVDMRLRALTGLEREKIEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ +  LLG+IK+E+L + ++    RRT+I     D+  ED I R
Sbjct: 448 EYAELMKKIEEYKAILADKKLLLGVIKKEILVIAEKYGDDRRTKIGFDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++ LGY+KR+ +  +++Q RGGKG  G+   ++D++ +LFI ++H  ++FF++ 
Sbjct: 508 ENVVITMTKLGYIKRMSMDTFKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT I+P  E E      Y+  AT+ G
Sbjct: 568 GRVYRLKAYEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYEE---GKYLFMATEKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D+  + ++G  A+ L   D+++ V+      DI L TK G C+RF  + +R 
Sbjct: 625 LVKKTPIQDYANVRKTGLAAIVLREDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L   D VI M I                                   
Sbjct: 685 -TGRVSMGVRGMNLTDNDVVIGMQI----------------------------------- 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                             + + + +L VSE+G GKRT   +F   NR GKG++   +++ 
Sbjct: 709 ------------------ESQGKDMLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V +  V+++ +I++++ +G +IR+  ++I +  R T GV + +  +++ V SV 
Sbjct: 750 -KTGNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVA 808

Query: 896 RIRESEIVDEAESTE 910
           ++R++    + E  E
Sbjct: 809 KVRKASAEIDGEEVE 823


>gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
 gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506]
 gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
          Length = 838

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/912 (37%), Positives = 511/912 (56%), Gaps = 91/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY T RGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + ++++
Sbjct: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815

Query: 895 ERIRESEIVDEA 906
            R  E    D A
Sbjct: 816 ARNAEESGDDNA 827


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/854 (46%), Positives = 545/854 (63%), Gaps = 26/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L+ Y AQRRGGKG++   M+DEDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVKEYEA---DKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+     NDI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           GI LA+ D V+S+ +      VL    +   +   ++   A+ R   G      S +N S
Sbjct: 722 GIKLAESDNVVSLIVPHNDGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNGS 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V             L+    + ++  G   RT   +     R+ +G+     ++  ++ 
Sbjct: 782 VV--------GAVQVLEGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTTEDEKVV 833

Query: 840 ALVAVFPVNDNDQI 853
            L  +   +++D I
Sbjct: 834 GLQRIDEPDEDDII 847



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 166/435 (38%), Gaps = 39/435 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E + +++       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKTLLEEIAELLHILSSAERLMEVIREELELVK--EQFNDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D++DLI+  D     + +       + Q     E +     G     +++E 
Sbjct: 520 ITAATHDIDLEDLINQED----VVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    +  +  +K  +L    RT     IV        E +
Sbjct: 575 ----DFIERLLVANTHDTILCFSTRGRMYWLKVYQLPLASRTARGKPIVNILPLEENERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +        +  V   +  G VK+ PL+ +   R    G   V +RDED +  + I  
Sbjct: 631 TAILPVKEYEADKFVFMATADGTVKKTPLTDFSRPRSA--GIIAVNLRDEDTLIGVDITD 688

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            +  ++ FS  G V +    ++      A G   +  + L + + + +++         N
Sbjct: 689 GNNDIMLFSKAGKVVRFNEGQVRAMGRTAAG---VRGIKLAESDNVVSLIV------PHN 739

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
           +  V+  T++G  +R +L ++   +R+  G +++K+      ++      + ++ ++ T 
Sbjct: 740 DGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITN 799

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  ++ +    GRN+ GV  I   + ++V+ +  +   D D       +  +   
Sbjct: 800 GGTLVRTRVAEV-SRVGRNTQGVTLIRTTEDEKVVGLQRIDEPDEDDIIEDAEITEVENT 858

Query: 762 RRLISGDTEEITSLK 776
               +   +  +S +
Sbjct: 859 ETPAADSEQGDSSEE 873


>gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334]
 gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
          Length = 873

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/899 (41%), Positives = 546/899 (60%), Gaps = 86/899 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA  R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R    R++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMG-RSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDD 816


>gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131]
          Length = 886

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/891 (43%), Positives = 549/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++ QGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 714 -----------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 501 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 560 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFAT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 675 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 720



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 597 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 652

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  +S   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 653 AVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 706 VAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 765

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERIC 753
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     + + DE+  
Sbjct: 766 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEENEDEQST 824

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
             +  + Q+R    + E   +  +   ++  +++E  +
Sbjct: 825 VSEDGTEQQREAVVNDETPGNAIHTEVIDSEVNDEDGR 862


>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
 gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
          Length = 873

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/899 (41%), Positives = 547/899 (60%), Gaps = 86/899 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R    R++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMG-RSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDD 816


>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 873

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/899 (41%), Positives = 547/899 (60%), Gaps = 86/899 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E E+  ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R    R++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMG-RSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDD 816


>gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/897 (41%), Positives = 563/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R    R + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMG-RTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  ++ G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVA--DKNGSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R]
 gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 856

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/914 (37%), Positives = 526/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +  +   +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MSD----DNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   + MG +HPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 57  FDNGYRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD +     +A M+ ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE   G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I
Sbjct: 237 IHDAYTTGRGSIRMRGVTSIE-EEGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN L++++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP P+ AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E Q  AIL ++L RL  L R  I +
Sbjct: 416 GLMS--------------------------LLDVDEAQADAILAMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+S  R   I++ EL  + ++    RR++I+    D+ +ED I R
Sbjct: 450 ELAEIELEIADLKDILASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++  GY KR  +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 510 ENVVITITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNY 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L    GE+I  ++     ES  +  Y+V AT HG
Sbjct: 570 GRVYRLKAFELPEASRTARGQHVANLLEFQPGEQIAQVIQL---ESYNDFPYLVLATAHG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L D+      G IA+ L+  D ++    C +E+D+LL ++ GQ +RF     ++
Sbjct: 627 RVKKSRLLDYESARSGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++SM++V   +                             
Sbjct: 687 RPMGRATAGVKGMRFRDNDQLLSMSVVRDGE----------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+GKRT   D+    R G G+     + 
Sbjct: 718 ------------------------FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV+   V ++D+I  ++  G ++R  V +IR +SRAT GV + +  +   ++++
Sbjct: 754 --KRGRLVSAIAVEEDDEIFAITSAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           ++  E +    AE+
Sbjct: 812 DKNVEDQGEASAEA 825


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/867 (41%), Positives = 539/867 (62%), Gaps = 28/867 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM R+W++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +   G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +G QVI+M +     A   E+      ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   E  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQ 852
           G+    V + N++  L  V   +   +
Sbjct: 838 GVTLIAVGEGNKLSGLQRVVESDAEGE 864


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/889 (41%), Positives = 544/889 (61%), Gaps = 86/889 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D   E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   
Sbjct: 2   DIFNEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA 
Sbjct: 62  KGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE++DG + +IDNP++ +  LM  I+GPDFPTGA I+G+ GI+ AY TGRG I
Sbjct: 182 NIPPHNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE     R +IVVTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G 
Sbjct: 242 VVRADAEIE-EENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELKR A+ +V+LN LY++T LQ  F V M+AL   +P    +  IL  ++ +++EV
Sbjct: 301 RIVVELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM++        
Sbjct: 361 ITRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AILE+RL RLTGL R+ I  E   L  +I+   
Sbjct: 413 ------------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLK 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S  +LLG+IK EL  +K +    RRT+I + + +++ ED I  ED+V+T+++ GY+
Sbjct: 455 SILASEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    Y AQRRGGKG   +  +++DFV  + I STH+ VLFF++ G VYK + + +P 
Sbjct: 515 KRISADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPD 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  +IN++++   E+I T++   + +      ++  ATK+G V++  +S+F  +
Sbjct: 575 AGRQAKGTNVINLIAIEPDEKIQTVLTVSDGKKEG---FLFMATKNGIVKKTHISEFKNL 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IA+ L   DE+L V+    + +I++ T+ G  VRF    +R    R + GV+ I+
Sbjct: 632 RKNGLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAMG-RTASGVKAIN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D  + M I +  +                                           
Sbjct: 691 LKDDDVAVCMDIAVDGE------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L +SE GFGKRT   ++++ NR G G+    +S+  + G L       
Sbjct: 708 ----------ELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICK 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +D+++L++  G  IR+ V +I + +R+  GV +  T +DE+VV++ +I
Sbjct: 756 VDDELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 93/224 (41%), Gaps = 15/224 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       +E  +   +  G VK+  +S ++  R+   G   + ++D D +  + 
Sbjct: 594 EKIQTVLTVSDGKKEGFLFMATKNGIVKKTHISEFKNLRK--NGLIALSLKDNDELLKVK 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
                 +++  +  G+  +     +      A G   IN+    + + +   M    D  
Sbjct: 652 NTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINL----KDDDVAVCMDIAVDGE 707

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++  +++G  +R  +S++   NR G   +     ++   +     C  +++++L
Sbjct: 708 E-----LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISEKTGKLTGATICKVDDELML 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
               G  +R  ++ I V   R+++GV  +   + ++V+++A +L
Sbjct: 763 INSSGVAIRINVADISV-TNRSAMGVTLMRTTEDEKVVAIAKIL 805


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/901 (42%), Positives = 560/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVCLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  ++T    G  KRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 714 ---------EILVVTEKGYG--KRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 106/266 (39%), Gaps = 13/266 (4%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +    
Sbjct: 603 IAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGK--IAIKFRDDDELIAVCLTDGE 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  ++   + + K   +   S  A G   +  + L  G+ +  +    +D       
Sbjct: 661 KHILIGTAQASLIRFKETDVRAMSRIAAG---VKGIRLRDGDEVIGLDVADDDNQDE--- 714

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            ++  T+ G  +R  + D+   NR G   K A   +    ++ + T   + D+++ T  G
Sbjct: 715 -ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  +S I V   R + GVR I L +   V ++A V     D +         ++   
Sbjct: 774 VIIRMEVSNISVNG-RMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDV 832

Query: 764 LISGDTEEITSLKNDSSVEGNISEER 789
            +  D        +  + E  +S ER
Sbjct: 833 EVVVDDVTPGDTIHTEAPEPEVSPER 858


>gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 843

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/902 (40%), Positives = 539/902 (59%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    IT V+++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K
Sbjct: 3   EELSGRITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ K+TVDF+ NYDG+ +EP +L AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TG G+I+
Sbjct: 183 IPPHNLSEVISAIHILMNNEDATTADLMEAVPGPDFPTGGIVMGKSGIRKAYETGHGTII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G R
Sbjct: 243 LRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+   L  IL+ ++  +EEV+
Sbjct: 303 VVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLGLKEILQHYLVHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM           
Sbjct: 363 RRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLMNN--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ + +E N +   I +  D
Sbjct: 414 -----------------YSLSSKQAQAILDMRLVRLTGLEREKVEDEYNKVMAAITDYRD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ R R+  II +ELL +++     RRT + V  +L +EDED I  ED++VT++H GY+
Sbjct: 457 ILAHRERINEIIYKELLEIQERFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S ++ Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P 
Sbjct: 517 KRMATSEFKTQNRGGRGIQGMGVHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPED--ESSWNNLYVVFATKHGNVRRNKLSDFI 666
            S  A+G  +IN+L ++ GE I  ++    D  +    N Y+ F T +G  +R  +++F+
Sbjct: 577 YSRTAKGIPVINLLGISSGENIQAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFL 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     E +I++ T  G  V F  + +R    R++ GVRG
Sbjct: 637 NIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSMG-RSATGVRG 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  AI+                                             
Sbjct: 696 IRLRDEDYVVGSAILKP------------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  +  
Sbjct: 713 ----------ESKVLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKN--GPLAGLVT 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + ++L++D+G +IR  VN +    RAT GV +  T ++ +V ++  + E+ + DE 
Sbjct: 761 VEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVIKTDENSKVATMAIVDEAPVDDEN 820

Query: 907 ES 908
           ++
Sbjct: 821 QT 822



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 98/249 (39%), Gaps = 15/249 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           ++ D       +   +  G  KR P++ +   R    G   + +++ D V ++ I     
Sbjct: 607 DNGDEDNENRYLFFTTLNGVTKRTPVAEFLNIRS--NGLKAISLKENDEVINVVITDGEQ 664

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +++  +  G+    K   +      A G  +  I   ++   + + +  PE +       
Sbjct: 665 NIIIGTHNGYAVSFKEADVRSMGRSATG--VRGIRLRDEDYVVGSAILKPESK------- 715

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           V+  T+ G  ++   S++    R GK    A   +    +  + T     D++L T  G 
Sbjct: 716 VLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGTEDVMLITDRGV 775

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF ++ +    GR ++GV  I   +  +V +MAIV  A  D + +       +A+   
Sbjct: 776 MIRFDVNNVST-TGRATLGVHVIKTDENSKVATMAIVDEAPVDDENQTQTPATEAAETES 834

Query: 765 ISGDTEEIT 773
           ++ +     
Sbjct: 835 VTVEESSEE 843


>gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 817

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/871 (43%), Positives = 540/871 (61%), Gaps = 68/871 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI LA  D+V+S+ I                          G+   +T  +N       
Sbjct: 722 RGIKLAGDDKVVSLIIPR------------------------GEGAILTVTQNGYGKRTA 757

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             E   +    +    + V+E                R+G  + A  V            
Sbjct: 758 ADEYPTKSRATQGVISIKVTE----------------RNGSVVGAVQV------------ 789

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
              +D DQI++++D GTL+R  V+EI +  R
Sbjct: 790 ---DDCDQIMMITDAGTLVRTRVSEISVVGR 817



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 15/230 (6%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+   A   D   E    +  +QEN ++  +  G     P++       R   G     
Sbjct: 517 RRTEITANSADINIE----DLISQENVVVTLSHQGYVKYQPLTDYEA-QRRGGKGKSAAR 571

Query: 729 LAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + D +  + +    D         R+ +MK               I +L    + E  
Sbjct: 572 IKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 631

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +    +E   +   +   +  G  K+T+  +F     +G  I A +++  +E   L+ V
Sbjct: 632 TAILPVRE-YEEGVNVFMATASGTVKKTALTEFSRPRSAG--IIAVNLNDGDE---LIGV 685

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 686 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 735



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 8/258 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   L+D+    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
               +  +   A R + G   ++L   +    +  +L      +    +M   S   +  
Sbjct: 600 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKT 658

Query: 766 SGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           +             +V  N  +E    +L      ++  S  G   R      R   R+ 
Sbjct: 659 ALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTA 718

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+R   ++  ++   +V++        I+ V+  G   R   +E    SRAT+GV+   
Sbjct: 719 TGVRGIKLAGDDK---VVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 775

Query: 885 -TAKDERVVSVERIRESE 901
            T ++  VV   ++ + +
Sbjct: 776 VTERNGSVVGAVQVDDCD 793



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +A +LH     D  +  ++      R   GD          + +  N ++   ++L  +E
Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQFGDERR-------TEITANSADINIEDLISQE 537

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ++T+S +G+ K     D+    R GKG  A  + + + I  L+     N +D I+  S
Sbjct: 538 NVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVA---NTHDTILCFS 594

Query: 858 DKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            +G L  + V ++  ASR  +G   V +     +ER+ ++  +RE E 
Sbjct: 595 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 642


>gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 856

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/914 (37%), Positives = 525/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +  +   +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MSD----DNTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   + MG +HPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 57  FDNGYRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD +     +A M+ ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE   G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I
Sbjct: 237 IHDAYTTGRGSIRMRGVTSIE-EEGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN L++++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP P+ AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E Q  AIL ++L RL  L R  I +
Sbjct: 416 GLMS--------------------------LLDVDEAQADAILAMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +   IL+S  R   I++ EL  + ++    RR++I+    D+ +ED I R
Sbjct: 450 ELAEIELEIADLKAILASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++  GY KR  +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 510 ENVVITITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNY 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L    GE+I  ++     ES  +  Y+V AT HG
Sbjct: 570 GRVYRLKAFELPEASRTARGQHVANLLEFQPGEQIAQVIQL---ESYNDFPYLVLATAHG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L D+      G IA+ L+  D ++    C +E+D+LL ++ GQ +RF     ++
Sbjct: 627 RVKKSRLLDYESARSGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++SM++V   +                             
Sbjct: 687 RPMGRATAGVKGMRFRDNDQLLSMSVVRDGE----------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+GKRT   D+    R G G+     + 
Sbjct: 718 ------------------------FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV+   V ++D+I  ++  G ++R  V +IR +SRAT GV + +  +   ++++
Sbjct: 754 --KRGRLVSAIAVEEDDEIFAITSAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           ++  E +    AE+
Sbjct: 812 DKNVEDQGEASAEA 825


>gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 881

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/878 (42%), Positives = 536/878 (61%), Gaps = 45/878 (5%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL DL KDTVD+
Sbjct: 61  YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+ EVV+ C+A  DNP+I +
Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIP 272
           + LME I GPDFPTG +I G++GI +AY TG+G + IRG  H E+     R  IV TEIP
Sbjct: 181 EGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEIP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+LKRG +A+V++N L+  T 
Sbjct: 241 YQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNTQ 300

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT + L KAR+R H+L GL +
Sbjct: 301 LENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGLTV 360

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI------------DDSSYT 440
           A+AN+DE++  I+ S NP  AR  L+   W    +  L++              +D +  
Sbjct: 361 ALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRP 420

Query: 441 IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            G SD    LS  Q  AILELRL RLTGL +D +  E   +  +I E   IL+  + L+G
Sbjct: 421 FGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLLMG 480

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I++EL  V  +    RRT IVE  +D   ED I  E +V+TVS  GY K  PLS Y+AQ
Sbjct: 481 VIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQ 540

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ KV+ +P  S  A+G+ ++
Sbjct: 541 RRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIV 600

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L+  E +T I+P  E      N YV  AT  G V+R +L  F  I  +G  A++L+
Sbjct: 601 NLLPLDATETVTAILPLTE---FPENHYVFMATASGTVKRVELEQFANIRSNGLRAIELN 657

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D ++ V        I+L +  G+ +RF  + +R    R + GVRG+ ++      + +
Sbjct: 658 EEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMG-RTAKGVRGMRVS-----FASS 711

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +   DAD +         SA   L+S     +   +                       
Sbjct: 712 TLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVVPETGE-------------------- 751

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  S  G+GKRT   DF    R GKG+ A   S+ N  G LV    +++  +++L+SD 
Sbjct: 752 VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GELVGAVSIDETKELLLISDG 809

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 810 GTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 847



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 104/283 (36%), Gaps = 37/283 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           V   +  G VKRV L  + A  R   G   + + +ED +  +
Sbjct: 608 TETVTAILPLTEFPENHYVFMATASGTVKRVELEQF-ANIRS-NGLRAIELNEEDTLIGV 665

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGE------ 628
            I   +  ++ FS+ G   +     +      A+G          + LS    +      
Sbjct: 666 AITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDS 725

Query: 629 -------------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-- 673
                        RI +++  PE         V+ A+ +G  +R  ++DF    R GK  
Sbjct: 726 DDNDDSADSSLVSRIVSLVVVPETGE------VLCASANGYGKRTPVNDFPTKKRGGKGV 779

Query: 674 IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K      E++   +  +  ++LL +  G  VR   + +    GRN+ GVR I L++ 
Sbjct: 780 IAIKTSERNGELVGAVSIDETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEE 838

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +  +   + + +     +            + E+ +  
Sbjct: 839 ETLVGVVSIEAVEDEEELLEGEVDTTETDSEEAVSNNEDTSEE 881


>gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis]
 gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1]
 gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14]
          Length = 814

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/897 (41%), Positives = 563/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R    R + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMG-RTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  ++ G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVA--DKNGSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNGEAKIMTFALVDAAEIKEEKE 814


>gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 844

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/898 (42%), Positives = 545/898 (60%), Gaps = 70/898 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I  E+ +SYL YA++VI+GRA+PD+RDG KPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL KDTV+F PNYD + Q P V+  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+  C+A ID+ +I ++ LM+ + GPDFPT  +I G  GI+ AY TGRG I IR  
Sbjct: 186 NISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSKGIEQAYGTGRGRIYIRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++IE      R+ I+V EIPYQVNK  ++EKIAELV+EKR+  I+ LRDESD++G R++I
Sbjct: 246 ANIEVDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRILI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+VILNQLY  T LQ  F +NMVAL+  +P+  TL  IL+AF+  R EVV RR
Sbjct: 306 ELKRDAIAEVILNQLYSLTQLQVSFGINMVALDHGQPKVMTLKDILRAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++++IR + NP  A+  L+ ++W    +  ++D
Sbjct: 366 TLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSMLD 425

Query: 433 LIDDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            + D                 +G  + +E Q +AIL+LRL +LTGL  D++ NE   L  
Sbjct: 426 CVGDEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKELLN 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   ILS   RLL +I++E LS+K +   PRRT I     D+  ED I +ED+VVT+
Sbjct: 486 AIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQEDVVVTL 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+K  PLS Y AQ RGGKG+S    +DEDF+  L + +TH ++L FSS G +Y  K
Sbjct: 546 SHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGRLYWLK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  +RG+ ++N+L LN  ERIT I+P    E+     YV  AT  G V++  L
Sbjct: 606 VYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYET---GQYVFMATACGVVKKIAL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +   +G   + LD  DE++ V+     N+++L +  G+ +RF    +R    R + 
Sbjct: 663 LEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAMG-RTAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV GI LA+ D+V+S+ I                          GD + +T   N    +
Sbjct: 722 GVGGIRLAQEDRVVSLIIPR------------------------GDGDILTVTANGYGKK 757

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +  E   +            S  G G        +++ R+G  + A  V + + +  + 
Sbjct: 758 TSKEEYPTR------------SRNGMG----VISIKVNGRNGNVVGAIQVDENDHLMMI- 800

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                         +D GTL+R   +E+   SR TKGV +  T  +E+VV ++R+ E 
Sbjct: 801 --------------TDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEKVVGLQRLVED 844



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 6/126 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + ++ N ++   ++L  +E  ++T+S +G+ K     D+   +R GKG  A      + I
Sbjct: 521 TEIKINTADIHLEDLIPQEDVVVTLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFI 580

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
             L+     N +D I+  S +G L  + V ++  ASR ++G   V +     DER+ ++ 
Sbjct: 581 ERLLVA---NTHDNILCFSSRGRLYWLKVYQLPEASRGSRGRPIVNLLPLNPDERITAIL 637

Query: 896 RIRESE 901
            I+  E
Sbjct: 638 PIKNYE 643


>gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977]
 gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 839

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/916 (36%), Positives = 510/916 (55%), Gaps = 91/916 (9%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+  +    ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ 
Sbjct: 1   MTDTTLPPGGDDAVDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 61  MYDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              DP AA RYTE RL   A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG 
Sbjct: 121 PGNDPAAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRT 235
           GGIAVGMATN+P HNL E+ +     +DN + D +    A+ E I GPDFPT  +I+G  
Sbjct: 181 GGIAVGMATNMPPHNLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGTQ 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI +AY TGRGSI +RGV+ IE+ S  R  +V+TE+PYQVN    +  IAE VR+ +I  
Sbjct: 241 GIHDAYTTGRGSIRMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAG 300

Query: 296 IADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+++ D+S DR G R+V+ LKR A A V+LN LY++T LQ+ F  NM+++    P    L
Sbjct: 301 ISNIEDQSSDRVGLRIVVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +++ +V  + +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR
Sbjct: 361 DQLIRLYVNHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L++                           + + E+Q +AIL+++L RL  L R  I 
Sbjct: 421 TGLIE--------------------------LLDVDEIQAQAILDMQLRRLAALERQKII 454

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           ++L  +  EI +  DIL+   R   I+K EL  + ++    RRTRI+    D+ DED I 
Sbjct: 455 DDLAKIEAEIADLEDILAKPERQRAIVKDELAEITEKYGDDRRTRIISADGDVADEDLIA 514

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++
Sbjct: 515 REDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTT 574

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     E   +  Y+V ATK+
Sbjct: 575 KGRVYRAKAYDLPEAARTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATKN 631

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V+++KL++F      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   
Sbjct: 632 GLVKKSKLTEFDSNRSGGLVAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEA 691

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +   GR + GV+G+     D ++S+ +V                                
Sbjct: 692 LRPMGRATSGVQGMRFNGEDDLLSLNVVR------------------------------- 720

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 +  ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 721 ----------------------EGTYLLVATSGGYSKRTAIEEYPVQGRGGKGVLTVQYD 758

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                G+LV    V++  ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 759 PR--RGSLVGALVVDEESELYAITSGGGVIRTIAKQVRKAGRQTKGVRLMNLGEGDTLLA 816

Query: 894 VERIRESEIVDEAEST 909
           +    +    D  E  
Sbjct: 817 IAHNADEGDADPDEDA 832


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/855 (44%), Positives = 541/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 47  REITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 106

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + R+AQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 107 SARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 166

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 167 RMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 226

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 227 NLSEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 286

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+
Sbjct: 287 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVV 346

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 347 EVKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRR 406

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ + W+  ++  +++
Sbjct: 407 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAMLE 466

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 467 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFI 526

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL S  RL+ +I++EL +V+D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 527 AELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLSH 586

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 587 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 646

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 647 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEE---GRHVFMATASGTVKKTALTE 703

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP S +R    R + GV
Sbjct: 704 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSMG-RTATGV 762

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI+L +GD VIS+ +      +L    +   +   +     + R   G      S +N 
Sbjct: 763 RGINLGEGDSVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNG 822

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     E   Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 823 QVVGAVQVETTDQ--------IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENV 874

Query: 839 GALVAVFPVNDNDQI 853
             L  V    +++++
Sbjct: 875 VGLQRVAEPVEDEEL 889



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 101/271 (37%), Gaps = 22/271 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 668 ADERITAILP-------VREYEEGRHVFMATASGTVKKTALTEFSRPRSA--GIIAVNLN 718

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + +      V+ FS+ G V +    ++      A G   +  ++L +G+ + +
Sbjct: 719 EGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSMGRTATG---VRGINLGEGDSVIS 775

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E       ++  T++G  +R  ++++   +R+  G I++K+     +++    
Sbjct: 776 LI-VPRGEGD-----ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQ 829

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 830 VETTDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 888

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                          +    +       D  
Sbjct: 889 LDSIEPGEAIDDGTPLDDSDDGEVVDDADDE 919


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/892 (43%), Positives = 552/892 (61%), Gaps = 86/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            EE   +  V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 2   NEEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA R
Sbjct: 62  PYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG I+
Sbjct: 182 IPPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     + +IV+TEIPY V KA ++EKIAELV  K+I  IADLRDESDR G +
Sbjct: 242 VRAKAEIE-EHKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMK 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV
Sbjct: 301 IVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L GL IA+  +DEV+ IIR S     A+  LM+R         
Sbjct: 361 TRRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKR--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AI+++RL RLTGL R  + +EL  L  +IKE  +
Sbjct: 412 -----------------FGLSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L IIK+ELL +K++  +PR+T IV    +++ ED +  ED+VVT++H GY+K
Sbjct: 455 ILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL  Y++Q+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P  
Sbjct: 515 RMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPES 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N++ ++QGE++T ++P    + S +  YV+  TK G +++  + +F  I 
Sbjct: 575 GRQAKGTAIVNLIQISQGEKVTAVIPL---KKSDDIKYVLMCTKKGIIKKTSIEEFKSIK 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ LD  DE+++V+    E ++++ T  G  +RF    +R    R + GV  ISL
Sbjct: 632 RNGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPMG-RVARGVMAISL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +                                                       E  
Sbjct: 691 RED-----------------------------------------------------DEVV 697

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L   +  +LTV+EKGFGKRT   ++RI  R+GKGI A  +SK  + G LV++  V  
Sbjct: 698 EMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSK--KTGKLVSIRCVQP 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            D+ +++S  G LIR+ V +I    R T+GV +      +RVVS  RI   E
Sbjct: 756 EDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807



 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 9/250 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + + +L +      S +  + +   +E+   +    E+ ++  T  G   R P+   +  
Sbjct: 465 IIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKS- 523

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEIT 773
             R   G+ GIS  + D V  + I    D      ++   Y                   
Sbjct: 524 QKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAI 583

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 S    ++     +     +++L  ++KG  K+TS  +F+   R+G  I A  + 
Sbjct: 584 VNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNG--IIAITLD 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + +E   L+ V   N   ++I+ + KG  IR    ++R   R  +GV+  S  +D+ VV 
Sbjct: 642 ENDE---LINVKLTNGEREVIIGTAKGYAIRFNEKDVRPMGRVARGVMAISLREDDEVVE 698

Query: 894 VERIRESEIV 903
           ++ +     V
Sbjct: 699 MDLVHPDGEV 708


>gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833]
 gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833]
          Length = 834

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/911 (37%), Positives = 519/911 (56%), Gaps = 90/911 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE         ++ I  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTEVNTPPGPPADR-IEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   ++ Y K +RI G+VMG YHPHG+A+IYD + R+AQ WSLR  L++GQGNFGS 
Sbjct: 60  FEGGYRPDRGYFKSSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE R+   A  +L D+ KDTVDF+PNYDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 GNDPAAAMRYTESRMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E  +     +++P++  + L+E     I+GPDFPTGA+I+GR G
Sbjct: 180 GIAVGMATNIPPHNLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIVGRRG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI++R V  +E+ +  R+ +VVTE+PY VN   +   IAELVRE +I  I
Sbjct: 240 IEEAYRTGRGSIIMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGI 299

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDES  R G R+VI LKR A   V+LN LY++T LQ+ F  NM+AL    P    L 
Sbjct: 300 ADVRDESSSRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ ++  + +VVVRRT++LL KA +RAH+L GL  A+  +DEV+ +IR SP+   A+ 
Sbjct: 360 QFVRHYIRHQIDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQT 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + EVQ +AIL+++L +L  L R  I++
Sbjct: 420 GLMA--------------------------LLEIDEVQAQAILDMQLRKLAALERQQIQD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E + L  +I +  DIL S  R   ++ +EL  +  +    RRT+I     DM +ED I  
Sbjct: 454 EYDGLMAQIADYNDILGSEMRQRRLVSEELGEIIAKYGDERRTKITAYEGDMSEEDLIAE 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YRAQRRGGKG  G  +R +D V   F+ STH  +L F++ 
Sbjct: 514 EDVVVTITRGGYAKRTSIDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ L N+L++   E +  I+     + +    Y+V AT+ G
Sbjct: 574 GRVYRFKAYELPEAARDARGQHLANLLAMQPDEHVMEILSLRNYDEA---PYLVLATRSG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ +L+++      G IA+ L   DE+++    ++E+D+LL +K  Q +RF  +   +
Sbjct: 631 MVKKTRLAEYDSPRSGGLIAINLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+  A+GD++++M                                    
Sbjct: 691 RPMGRATAGVIGMRFAEGDELLAM------------------------------------ 714

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                           + ++  ++ +L  +E G+ KRT +  + +  R GKG+    +  
Sbjct: 715 ----------------EVIRDGDEEVLVATEGGYAKRTPADQYPVQGRGGKGVLTAKI-- 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   G L+    V   D++  ++  G +IR    EI+ + R T GV +   ++ + +V++
Sbjct: 757 VQSRGKLIGAIMVRPEDEVFAITSNGGVIRTRAAEIKRSGRQTMGVRLMHLSEGDSLVAL 816

Query: 895 ERIRESEIVDE 905
            R  ES   +E
Sbjct: 817 ARNAESLNNEE 827


>gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 818

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/888 (41%), Positives = 550/888 (61%), Gaps = 85/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRQGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R    R++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNMG-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V                                                 
Sbjct: 693 EGDRVVGASVV------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +++++D G +IR  V  I    R+T+GV +    +D ++V+   ++
Sbjct: 758 EDLMIITDTGVMIRTGVANISQTGRSTQGVKVMRLDQDAKIVTFTTVQ 805


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/901 (42%), Positives = 560/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  ++T    G  KRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 714 ---------EILVVTEKGYG--KRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 106/266 (39%), Gaps = 13/266 (4%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +    
Sbjct: 603 IAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGK--IAIKFRDDDELIAVRLTDGE 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  ++   + + K   +   S  A G   +  + L  G+ +  +    +D       
Sbjct: 661 KHILIGTAQASLIRFKETDVRAMSRIAAG---VKGIRLRDGDEVIGLDVADDDNQDE--- 714

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            ++  T+ G  +R  + D+   NR G   K A   +    ++ + T   + D+++ T  G
Sbjct: 715 -ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  +S I V   R + GVR I L +   V ++A V     D +         ++   
Sbjct: 774 VIIRMEVSNISVNG-RMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDV 832

Query: 764 LISGDTEEITSLKNDSSVEGNISEER 789
            +  D        +  + E  +S ER
Sbjct: 833 EVVVDDVTPGDTIHTEAPEPEVSPER 858


>gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 835

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/905 (40%), Positives = 549/905 (60%), Gaps = 97/905 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +ID+      +  ++ +++I++GPDFPTGA+ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S+R+G R+ IEL+R  +A+V+LNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSNREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ 
Sbjct: 354 EMLNYYLRHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                             L++VQ +AI+++RL  LTGL R+ + N
Sbjct: 414 GLIE--------------------------AFQLTDVQAQAIVDMRLRALTGLEREKLEN 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+ R  LLG+IK+E+L +  +    RRT I    LD+  ED I  
Sbjct: 448 EYKELMERIGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPE 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+V+T++ LGY+KR+    +++Q RGGKG  G+   +ED+V +LF+ STH  ++FF++ 
Sbjct: 508 QDVVITMTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT ++P  E E   +  Y+  ATK G
Sbjct: 568 GRVYRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE---DGKYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++D+  + ++G  A+ L   DE++ V+    E DI++ TK GQC+RF    +R 
Sbjct: 625 LVKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L+  D+VI M +    D                              
Sbjct: 685 -TGRTSMGVRGMNLSDRDEVIGMQLHTQGD------------------------------ 713

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                  ++L  SEKG GKRT+  +F   NR GKG++   +++ 
Sbjct: 714 -----------------------YLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G ++ V  VN++++I++++ +G +IR+    I I  R   GV + +   + +V S+ 
Sbjct: 750 -KTGNVIGVKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIA 808

Query: 896 RIRES 900
           ++RE+
Sbjct: 809 KVRET 813


>gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162]
 gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162]
          Length = 837

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/917 (37%), Positives = 513/917 (55%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    ++      I  V I  EMQ SY+ YA++VI+GRA+P++RDG+KPV RRIL+  
Sbjct: 1   MTDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   E MG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  YDAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L  + ++TVDF PNYDG  QEP VL AR PN+L+NG G
Sbjct: 121 GNDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D      L+A ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY+TGRGSI +RGV  +E+ S    ++V+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+S DR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 301 SKIEDQSSDRVGMRIVVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRTK+LL KA +RAH+L GL  A+  LDEV+ +IR S   E AR 
Sbjct: 361 QMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIART 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL+++L +L  L R  I +
Sbjct: 421 GLME--------------------------LLDVDELQANAILDMQLRKLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + ++    RRT+I+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILDKPERQRAIVRDELGEIVEKFGDDRRTKIIAADGDVTDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     +   +  Y+V ATK+G
Sbjct: 575 GRVYRAKAYELPEQSRTARGQHVANLLAFQPEERIAQVIQIKGYD---DAPYLVLATKNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L DF      G +A+ L   DE++     + E+D+LL +K  Q +RF  +   +
Sbjct: 632 LVKKSRLEDFDSNRSGGIVAINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++++ +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNGDDQLLALNVV--------------------------------- 718

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                ++ ++L  +  G+ KRT+  D+ +  R GKG+       
Sbjct: 719 --------------------QEDTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFDP 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    VND  ++  ++  G +IR    ++R A R TKGV + +  +   ++++
Sbjct: 759 --KRGDLVGALIVNDETELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGTTLLAI 816

Query: 895 ERIRES--EIVDEAEST 909
            R  +   E  DE E  
Sbjct: 817 ARNADETDETSDETEQA 833


>gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162]
          Length = 851

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/920 (40%), Positives = 559/920 (60%), Gaps = 102/920 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MEDNIF-------DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL ARYPN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +IDN      D  ++ L+EI++GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVREK+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPER 351
           I DL D S R+G R+ I+L++ A+A+V+LNQLY++T LQ  F V M+ L       +P+ 
Sbjct: 294 ITDLNDHSSREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKV 353

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            TL  +LK ++A +E+VV RRTKY LNKA++RAH+L GL  A+ N+DEV+RIIR S + +
Sbjct: 354 LTLPEMLKYYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQ 413

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A++ELM R                            L++VQ +AI+++RL  LTGL R+
Sbjct: 414 VAKQELMDR--------------------------FELTDVQAQAIVDMRLRALTGLERE 447

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E   L  +I++   IL+ R+ LL +I++E+L++ ++    RRT I     D+  ED
Sbjct: 448 KLEAEYAELMEKIRKLKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAYDISMED 507

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE+ V+T++ LGY+KR+ +  +R+Q RGG+G  G+   D+D++ +L + +TH  V+F
Sbjct: 508 MIPRENTVITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMF 567

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + +P     ARG A+IN+L L  GERIT ++P  + E      Y++ A
Sbjct: 568 FTNTGRVYRLKAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFEE---GHYLMMA 624

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G V++  + D+  + + G  A+ L   DE++ V+    + D++L TK GQC+RF  +
Sbjct: 625 TRKGLVKKTPIQDYANVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKET 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR S+GVRGI+L  GD+V++M +                               
Sbjct: 685 DVRS-TGRVSMGVRGINLLDGDEVVAMQL------------------------------- 712

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +  ++L VSE G GKRTS  +F   NR GKG++   
Sbjct: 713 ----------------------NTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYK 750

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++  + G ++    VN+ ++I++++ +G +IR+  ++I I  R T GV + + +    V
Sbjct: 751 ITE--KTGNVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTV 808

Query: 892 VSVERIRESEIVD-EAESTE 910
            S  ++RE +    E ES+E
Sbjct: 809 ASFAKVREKDEDKAEKESSE 828



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 112/283 (39%), Gaps = 23/283 (8%)

Query: 507 SVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            + +   T R T I+        E +  +           ++  +  G VK+ P+  Y  
Sbjct: 581 EIPEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGHYLMMATRKGLVKKTPIQDYAN 640

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R+   G + + +RD+D + ++   +    V+  +  G   + K   +      + G   
Sbjct: 641 VRK--IGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVRSTGRVSMGVRG 698

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           IN+L    G+ +  +      + +    Y++  +++G  +R  +S+F   NR GK     
Sbjct: 699 INLL---DGDEVVAM------QLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCY 749

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              ++   ++  +   +EN+I++ T  G  +R   S I +   R + GV+ I+L+ G  V
Sbjct: 750 KITEKTGNVIGAKAVNEENEIMMITTEGIIIRLQCSDISILG-RITSGVKLINLSDGVTV 808

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            S A V   D D  E+       + +        EE      +
Sbjct: 809 ASFAKVREKDEDKAEKESSEDTENTEEISEDATIEENQDSTEE 851


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/892 (43%), Positives = 552/892 (61%), Gaps = 86/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            EE   +  V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 2   NEEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA R
Sbjct: 62  PYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG I+
Sbjct: 182 IPPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     + +IV+TEIPY V KA ++EKIAELV  K+I  IADLRDESDR G +
Sbjct: 242 VRAKAEIE-EHKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMK 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV
Sbjct: 301 IVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L GL IA+  +DEV+ IIR S     A+  LM+R         
Sbjct: 361 TRRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKR--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AI+++RL RLTGL R  + +EL  L  +IKE  +
Sbjct: 412 -----------------FGLSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L IIK+ELL +K++  +PR+T IV    +++ ED +  ED+VVT++H GY+K
Sbjct: 455 ILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL  Y++Q+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P  
Sbjct: 515 RMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPES 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N++ ++QGE++T ++P    + S +  YV+  TK G +++  + +F  I 
Sbjct: 575 GRQAKGTAIVNLIQISQGEKVTAVIPL---KKSDDIKYVLMCTKKGIIKKTSIEEFKSIK 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ LD  DE+++V+    E ++++ T  G  +RF    +R    R + GV  ISL
Sbjct: 632 RNGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPMG-RVARGVMAISL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +                                                       E  
Sbjct: 691 RED-----------------------------------------------------DEVV 697

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L   +  +LTV+EKGFGKRT   ++RI  R+GKGI A  +SK  + G LV++  V  
Sbjct: 698 EMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSK--KTGKLVSIRCVQP 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            D+ +++S  G LIR+ V +I    R T+GV +      +RVVS  RI   E
Sbjct: 756 EDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807



 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 98/250 (39%), Gaps = 9/250 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + + +L +      S +  + +   +E+   +    E+ ++  T  G   R P+   +  
Sbjct: 465 IIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKRMPLDTYKS- 523

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEIT 773
             R   G+ GIS  + D V  + I    D      ++   Y                   
Sbjct: 524 QKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAI 583

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 S    ++     +     +++L  ++KG  K+TS  +F+   R+G  I A  + 
Sbjct: 584 VNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNG--IIAITLD 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + +E   L+ V   N   ++I+ + KG +IR    ++R   R  +GV+  S  +D+ VV 
Sbjct: 642 ENDE---LINVKLTNGEREVIIGTAKGYVIRFNEKDVRPMGRVARGVMAISLREDDEVVE 698

Query: 894 VERIRESEIV 903
           ++ +     V
Sbjct: 699 MDLVHPDGEV 708


>gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
 gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
          Length = 883

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/898 (40%), Positives = 549/898 (61%), Gaps = 84/898 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   + D   +  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG++++Y  + RMAQ+WSLR  L++GQGN+GS+
Sbjct: 61  LNLGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL K A  +L D+ KDT+D++ N+D + QEP VL A++PN+LVNG  
Sbjct: 121 DGDNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV++  +A ID+ +I++  LM+ ++GPDFPTG +I G  G + A
Sbjct: 181 GIAVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIYGFEGAREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG I++R  + IE  + DRE+I+VTEIPYQ+NK+ M+E+ AELV EK++  I+ +R
Sbjct: 241 SETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RVV E+KR A+A ++LN L++YTSLQ+ FSVN +AL   +P    L  ++  
Sbjct: 301 DESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGRPMLLNLKDLIHH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EV+VRRTK+ L +A  RAH+L GL IA+ +LDEV+++IR S  P+ AR  LM R
Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I+ E N L
Sbjct: 421 --------------------------FNLSDIQARAILDMTLRRLTGLERDKIKAEYNEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL+     + IIK EL+ +K++    RRT+IV    +M+ ED I  E++V+
Sbjct: 455 MKLIDYLKSILADEGLRMEIIKNELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR PL+ YR Q RGGKG  G   RD DF+  L I S H  +LFF+  G  + 
Sbjct: 515 TISHEGYIKRTPLTEYRTQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ NI+++ + E I   +     +D     N +++  T+ G ++
Sbjct: 575 LRVFEIPEGTRTSKGRAIQNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D +L     T  ++I++  K G+ +RF  S +R    
Sbjct: 635 KTSLEAYSRPRANGINAININEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPMG- 693

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGI+LA + D+V+ M  +  A                                 
Sbjct: 694 RTATGVRGITLAGENDEVVGMIAIDDA--------------------------------- 720

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              E  +L VSEKG+GKRT   D+R++NR GKG++  +V++  +
Sbjct: 721 -------------------ETTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTE--K 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            G LVA+  V D   +++++  G +IR+ +N++R   RAT+GV + S  +++ + SV 
Sbjct: 760 TGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRATQGVRLISLKENDSIASVA 817



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 110/261 (42%), Gaps = 17/261 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +  + ++  +  G +K+  L  Y   R    G + + + + D +    + +  + ++
Sbjct: 616 RDYLENNFIIMCTRKGVIKKTSLEAYSRPR--ANGINAININEGDTLLQATLTTGSSEIV 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +     +      A G  +  I    + + +  ++   + E++     V+ 
Sbjct: 674 MALKSGRAIRFNESTVRPMGRTATG--VRGITLAGENDEVVGMIAIDDAETT-----VLV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R  + D+   NR GK    ++  ++   +++++  T E+D+++  + G  +R
Sbjct: 727 VSEKGYGKRTDIEDYRVTNRGGKGVKTINVTEKTGQLVAIKGVTDEHDLMIINRSGIIIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +R    R + GVR ISL + D + S+A         +E    +  + A+   ++ 
Sbjct: 787 ISMNQLRTMG-RATQGVRLISLKENDSIASVA----QVEREEEVAEEISEIIAETEALAD 841

Query: 768 DTEEITSLKNDSSVEGNISEE 788
           D  + + + +D   E +  E+
Sbjct: 842 DENKTSVIVDDVVPEHDNVED 862


>gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
          Length = 862

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/914 (38%), Positives = 530/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    + +    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  YDSGYRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNP+   +      ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+  G+R+ IV+TE+PYQVN   M+  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEEV-GNRQTIVITELPYQVNPDNMISNIAESVVNGKIAGI 295

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DES DR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 AKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VA + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  E AR 
Sbjct: 356 QMLSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LMQ                           + + E+Q  AIL +RL RL  L R  I +
Sbjct: 416 GLMQ--------------------------LLGVDEIQADAILAMRLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +  DIL+   R   I+  EL  + ++    RRT+IV    D+ DED I R
Sbjct: 450 ELAEIEEIIADLKDILAREERQREIVHDELEEIVEKYGDERRTQIVAASGDVSDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITATGYAKRTKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++  +   + +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++SM++V                                 
Sbjct: 687 RPMGRATAGVKGMRFRGDDQLLSMSVVSD------------------------------- 715

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  QF+L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 716 ----------------------GQFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+A   V+++D+I  ++  G ++R  VN+IR +SRAT GV + + A D  ++++
Sbjct: 754 --KRGKLIAAISVDEDDEIFAITSAGGVVRTEVNQIRPSSRATMGVRLVNLADDVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           +R  E +  ++A++
Sbjct: 812 DRNVEDDGEEDAQA 825


>gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
 gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
          Length = 818

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/888 (41%), Positives = 550/888 (61%), Gaps = 85/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + +  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRQGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R    R++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNMG-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V                                                 
Sbjct: 693 EGDKVVGASVV------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +++++D G +IR  V  I    R+T+GV +    +D ++V+   ++
Sbjct: 758 EDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVTFTTVQ 805


>gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
 gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
          Length = 863

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/903 (38%), Positives = 519/903 (57%), Gaps = 95/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     + E    I  + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRR+L+ M
Sbjct: 1   MSD----DNNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   + MG YHPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 57  YDNGYRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD D     +  ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE   G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I
Sbjct: 237 IHDAYTTGRGSIRMRGVTSIE-EEGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN L++++ LQS F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  E AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARD 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + ++Q  AILE++L RL  L R+ I N
Sbjct: 416 GLMS--------------------------LLDVDQIQADAILEMQLRRLAALEREKIVN 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           ELN L   I +  DIL+S  R   I++ EL  + ++    RR++I+    D+ +ED I R
Sbjct: 450 ELNELETIIADLKDILASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     ERI  ++     E   +  Y+V AT  G
Sbjct: 570 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQTYE---DAPYLVLATAQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++      + +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+   +GDQ+++M++V   +                             
Sbjct: 687 RPMGRATAGVKGMRFREGDQLLAMSVVRDGE----------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+GKRT   ++    R G G+     + 
Sbjct: 718 ------------------------FLLVATSGGYGKRTPISEYSTQGRGGLGVVTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V ++D+I  ++  G +IR  VN+IR +SRAT GV + +   D  ++++
Sbjct: 754 --KRGRLIGALAVEEDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLQDDVELLAI 811

Query: 895 ERI 897
           ++ 
Sbjct: 812 DKN 814


>gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a]
 gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a]
          Length = 834

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/910 (39%), Positives = 518/910 (56%), Gaps = 92/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPP---PGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYD L R+AQ WSLR  L++G GNFGS 
Sbjct: 58  YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 118 GNDPPAAMRYTEARMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +D+ +   + L+E    II+GPDFPT  +I+GR+G
Sbjct: 178 GIAVGMATNIPPHNLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIVGRSG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E  +  R Q+VVTE+PYQVN   + EKIAELVR+ ++  I
Sbjct: 238 IEDAYRTGRGSIRMRAVVNVE-ENKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+RDE+  R G R+VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L 
Sbjct: 297 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR 
Sbjct: 357 QMIRYYVEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 417 QLMER--------------------------FTLSEIQATAILDMQLRRLAALERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+S  R   II +EL  V ++    RRTR+V    DM  ED I +
Sbjct: 451 EAAELRARISELEAILASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQ 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+QRRGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+ +Q ERI  ++   + E +    Y+V ATK G
Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVIALKDYEVA---PYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++  LSDF      G +A+ L   DE+++       +D+LL ++  Q +RF     ++
Sbjct: 628 LCKKTALSDFDSNRAGGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQL 687

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D+++SM +V+                                
Sbjct: 688 RPMGRATSGVIGMRFDAEDELLSMDVVVPG------------------------------ 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +  G+ KRT   ++ +  R GKG+    +  
Sbjct: 718 ---------------------TTADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI-- 754

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++  G LV    V+ +DQ+  ++  G ++R    ++R A R T GV +       +VV V
Sbjct: 755 VSTRGGLVGALVVDPDDQLYAIASNGGVLRTIAKDVRRAQRQTMGVRLIDLETGVQVVGV 814

Query: 895 ERIRESEIVD 904
            R  ++E  +
Sbjct: 815 ARNADAEDTE 824


>gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
 gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
          Length = 822

 Score =  771 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 559/905 (61%), Gaps = 90/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE VD    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIYKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPDRVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    D    ++ Y+ F T+ G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSERSDDAYLFFTTRAGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TKLG  VRF  S +R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V+  ++ G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVT--DKNGPLAGLLTVTGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-----E 905
           + +++++DKG +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDKGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGAENE 817

Query: 906 AESTE 910
            ES E
Sbjct: 818 IESEE 822


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  771 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/901 (42%), Positives = 560/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I  G +D +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQD---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  ++T    G  KRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 714 ---------EILVVTEKGYG--KRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 106/266 (39%), Gaps = 13/266 (4%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +    
Sbjct: 603 IAVKDLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGK--IAIKFRDDDELIAVRLTDGE 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  ++   + + K   +   S  A G   +  + L  G+ +  +    +D       
Sbjct: 661 KHILIGTAQASLIRFKETDVRAMSRIAAG---VKGIRLRDGDEVIGLDVADDDNQDE--- 714

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            ++  T+ G  +R  + D+   NR G   K A   +    ++ + T   + D+++ T  G
Sbjct: 715 -ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  +S I V   R + GVR I L +   V ++A V     D +         ++   
Sbjct: 774 VIIRMEVSNISVNG-RMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDV 832

Query: 764 LISGDTEEITSLKNDSSVEGNISEER 789
            +  D        +  + E  +S ER
Sbjct: 833 EVVVDDVTPGDTIHTEAPEPEVSPER 858


>gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68]
 gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3]
 gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis]
 gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3]
          Length = 814

 Score =  771 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/897 (41%), Positives = 562/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS  Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R    R + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMG-RTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  ++ G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVA--DKNGSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3]
 gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3]
          Length = 834

 Score =  771 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/910 (39%), Positives = 516/910 (56%), Gaps = 92/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPP---PGDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG+ AIYD L R+AQ WSLR  L++G GNFGS 
Sbjct: 58  YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 118 GNDPPAAMRYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +D+PD     L+E    +I+GPDFPT  +I+GR G
Sbjct: 178 GIAVGMATNIPPHNLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIVGRNG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI +R V ++E  +  R Q+VVTE+PYQVN   + EKIAELVR+ R+  I
Sbjct: 238 IEEAYRTGRGSIRMRAVVNVE-ENKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE+  R G R+VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L 
Sbjct: 297 ADVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR 
Sbjct: 357 QMVRYYVEHQIDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 417 QLMER--------------------------FSLSEIQATAILDMQLRRLAALERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +   IL+S +R   II +EL  V ++    RRTR+V    DM  ED I +
Sbjct: 451 EAAELRAKISDLEAILASPTRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQ 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+QRRGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+  Q ERI  ++   + E++    Y+V ATK G
Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFGQDERIAEVIAVKDYEAA---PYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++  L DF      G +A+ L   DE+++       +D+LL ++  Q +RF     ++
Sbjct: 628 LCKKTALHDFDSNRAGGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQL 687

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D+++SM +V+                                
Sbjct: 688 RPMGRATSGVIGMRFDAEDELLSMDVVVPG------------------------------ 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +  G+ KRT   ++ +  R GKG+    +  
Sbjct: 718 ---------------------TTADLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI-- 754

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++  G LV    V+ +DQ+  ++  G ++R    ++R A R T GV +       +VV V
Sbjct: 755 VSTRGGLVGALVVDPDDQLYAIASNGGVLRTVAKDVRRAQRQTMGVRLIDLESGVQVVGV 814

Query: 895 ERIRESEIVD 904
            R  ++E  D
Sbjct: 815 ARNADAEDTD 824


>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 836

 Score =  771 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/901 (40%), Positives = 544/901 (60%), Gaps = 83/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++EE    IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   AEEEMSNRITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     ++DNPD   + LM+++ GPDFPTG V+LG++GI+ AY TG+G+
Sbjct: 182 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVLGKSGIRKAYETGKGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+T   R+QI+V EIPY VNKA ++E+IAEL REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL  ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL IA+ ++DE+++IIR S   E A+ ELM +       
Sbjct: 362 VVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSK------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL++RL RLTGL R+ I  E   L   I + 
Sbjct: 415 -------------------YGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ R R+  II  EL  ++      RRT + V  + ++EDED I ++D+VVT++H G
Sbjct: 456 KDILAHRERIQQIIYDELKEIQRRFGDARRTELQVGDITNLEDEDLIEQQDIVVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YIKRLPVDEFKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E+I  ++          +  + F TK G V+R  + +F 
Sbjct: 576 PEYGRSAQGIPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFK 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++VE    + ++++ T  G  V F  SA+R    R + GVRG
Sbjct: 636 NIRSNGLKAINLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSMG-RAAAGVRG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD VI    +                                             
Sbjct: 695 VRLREGDFVIGAGQLNP------------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L +SEKGFGK+T + ++ I  R GKGI+  +V++ N  G L  +  
Sbjct: 712 ----------DSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKN--GPLAGLTT 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+ ++ I+LV+ +G +IR  V  +    RAT GV +       +V ++ R+ + E  D+ 
Sbjct: 760 VDGDEDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEAADDE 819

Query: 907 E 907
           +
Sbjct: 820 Q 820



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 94/240 (39%), Gaps = 15/240 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +  ++++ +      +  +  V+  G VKR  +  ++  R    G   + + D D +  +
Sbjct: 599 INAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFKNIRS--NGLKAINLHDGDELIAV 656

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            I+    +++  +  G+        +      A G   +  + L +G+ +        D 
Sbjct: 657 EIIDHDQNMIIGTHEGYAVSFSASAVRSMGRAAAG---VRGVRLREGDFVIGAGQLNPD- 712

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
                  V+  ++ G  ++   +++    R GK    ++  ++   +  + T   + DI+
Sbjct: 713 -----SRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKNGPLAGLTTVDGDEDIM 767

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L T  G  +RF +       GR ++GV  I L  G +V +M  V   +A  DE+      
Sbjct: 768 LVTTEGVIIRFGV-ETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEAADDEQPDLSTE 826


>gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
 gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
          Length = 833

 Score =  771 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/904 (41%), Positives = 550/904 (60%), Gaps = 97/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTG +ILG  
Sbjct: 174 GIAVGMATNIPPHNLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG + +R V+ IE     + +I+V+E+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKVRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S+R+G RV IEL+R A+A+VILNQLY++T LQ  F V M++L   +P    L+
Sbjct: 294 ITDLSDQSNREGMRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSLINNEPRVMNLL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ 
Sbjct: 354 DMLNYYLEHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM+R                            LS+VQ++AI+++RL  LTGL R+ + N
Sbjct: 414 ELMER--------------------------FGLSDVQSQAIVDMRLRALTGLEREKLEN 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I E   IL+ R  LLG+IK+E++ ++D+    RRT I     D+  ED I R
Sbjct: 448 EYKELMEKIGELKAILADRKLLLGVIKEEIIIIRDKYGDERRTSIGFDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+V+T++ LGY+KR+    ++AQ RGGKG  G+   +ED+V +LF+ +TH  ++FF++ 
Sbjct: 508 QDVVITMTKLGYIKRMSNDTFKAQHRGGKGIKGMQTLEEDYVEELFMTNTHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  +RG A+IN+L L   E+IT ++P  E +      Y+  +TK G
Sbjct: 568 GRVYRLKAYEIPEASRTSRGTAIINLLQLMPEEKITAVIPIEEYKEGE---YLFMSTKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++D+  + ++G  A+ L   DE++ V+    E DI+L TK GQC+RF    +R 
Sbjct: 625 LVKKTPITDYANVRKTGLAAITLREEDELIEVKYTNNERDIILITKYGQCIRFNERDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++LA  D+VI M +                                   
Sbjct: 685 -TGRTSMGVRGMNLADRDEVIGMQL----------------------------------- 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               +   +L VSEKG GKRT   +F   NR GKG++   +++ 
Sbjct: 709 ------------------DSQGTHLLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V V  V+ +D+I++++  G +IR+  + I    R T GV + +    E V S+ 
Sbjct: 750 -KTGNVVGVKAVDLDDEIMIINTGGIIIRMKCDNISSLGRVTSGVKLINLPDGETVASIA 808

Query: 896 RIRE 899
           ++R+
Sbjct: 809 KVRK 812


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/913 (42%), Positives = 554/913 (60%), Gaps = 70/913 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEVVD C+ ++++P+ DL+AL+EI++ PDFPT  +I G  G+   Y TGRG +V
Sbjct: 182 IPPHNLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGLIYGLHGVHEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +HIE      DRE I+V E+PYQVNK  +LE+IAELV EK++  I+++RDESD+ G
Sbjct: 242 MRARTHIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR    +V+LN LY++T LQ  F +NMVAL   KP    L  +L  F+  R E
Sbjct: 302 MRVVIELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGKPRLLNLKQMLVCFLEHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KARDR H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W +  +
Sbjct: 362 VVTRRTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLV 421

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++      SY           S     LS+ Q +AILELRL RLTGL +D I  E   
Sbjct: 422 EEMLSRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYRE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I + LDIL+   R+  II +EL +++++   PRR+ IV    ++  ED I  EDMV
Sbjct: 482 VMDLITDLLDILARPERITAIIVEELTAIRNQFGDPRRSEIVLSTAEINIEDLITPEDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY KR PL+ YRAQRRGG+G+    M+DEDF+  LF+ +TH +VL FSS G  Y
Sbjct: 542 VTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSSRGRAY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G+  +RGK ++N+  L +GE+IT ++P    ++     +V  AT  G V++
Sbjct: 602 WLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPV---QTFDEEHFVFMATSEGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L+ F    ++G IA+ LD  D ++ V     E D++L +  G+ VRF  S +R    R
Sbjct: 659 TALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESDVRPMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L  G +VI+M +                               +T+ +N  
Sbjct: 718 EARGVRGMTLEDGQRVIAMLVAKGETQSV-----------------------LTATENGY 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                ++E                +  G G +      + S+R+GK + A  V   +E+ 
Sbjct: 755 GKRTPVAEY---------------TRHGRGTKGMIA-IQTSDRNGKLVGAVLVDPTDEV- 797

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L++   V       L+  K   IR          RAT+GV + +  +   +  +E++ E
Sbjct: 798 MLISTGAV-------LIRTKVQDIR-------ELGRATQGVTLINLDEGTYLAGIEKVAE 843

Query: 900 S--EIVDEAESTE 910
           S  E  +  E  E
Sbjct: 844 SGAEADELVEGGE 856


>gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
 gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
          Length = 813

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/895 (40%), Positives = 545/895 (60%), Gaps = 85/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++  +   E+ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVE 813


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/867 (41%), Positives = 539/867 (62%), Gaps = 28/867 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L  G QVI+M +     A   E+      ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLEDGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   E  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQ 852
           G+    V + N++  L  V   +   +
Sbjct: 838 GVTLIAVGEGNKLSGLQRVVESDAEGE 864


>gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 829

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/897 (40%), Positives = 547/897 (60%), Gaps = 86/897 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G+IV+R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD
Sbjct: 241 KGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  
Sbjct: 301 QTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q     
Sbjct: 361 QEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q++AIL++RL RLTGL RD I  E   L  +I
Sbjct: 417 ----------------------FGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  DIL+   R+  II  ELL ++      RRT+I E   + +EDED I ++D+++T++
Sbjct: 455 ADYKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K 
Sbjct: 515 HNGYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S
Sbjct: 575 YEIPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R    R + G
Sbjct: 632 EFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMG-RTAAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L   D V+                                               
Sbjct: 691 VRGINLRDNDYVVG---------------------------------------------- 704

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   ++   +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  
Sbjct: 705 -------SDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V  VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++
Sbjct: 756 VTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKA 812


>gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
 gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
          Length = 829

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/897 (40%), Positives = 547/897 (60%), Gaps = 86/897 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM TNIP HNL EV+ G   ++DNPD+    L+++I GPDFPTG +++GR GI  AY TG
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVMGRGGIYRAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G+IV+R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD
Sbjct: 241 KGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  
Sbjct: 301 QTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q     
Sbjct: 361 QEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q++AIL++RL RLTGL RD I  E   L  +I
Sbjct: 417 ----------------------FGLDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  DIL+   R+  II  ELL ++      RRT+I E   + +EDED I ++D+++T++
Sbjct: 455 ADYKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K 
Sbjct: 515 HNGYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S
Sbjct: 575 YEIPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R    R + G
Sbjct: 632 EFQNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMG-RTAAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L   D V+                                               
Sbjct: 691 VRGINLRDNDYVVG---------------------------------------------- 704

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   ++   +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  
Sbjct: 705 -------SDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V  VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++
Sbjct: 756 VTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKA 812


>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
 gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
          Length = 832

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/916 (37%), Positives = 507/916 (55%), Gaps = 91/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +      I  V +  EMQNSY+ YA++VI+GRA+P++RDGLKPVHRR+L+  
Sbjct: 1   MSDETDLPENNGGDRIEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   E MG YHPHG+++IYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  FDAGFRPERGYVKSARPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  +L D+ ++TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D     ++NP+ D +    A ME+++GPDFPT A+I+G  G
Sbjct: 181 GIAVGMATNIPPHNLNEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE+      Q++VTE+PYQVN   ++  IAE V + ++  I
Sbjct: 241 IRDAYMTGRGSIRMRSVVDIEEVK-GTTQLIVTELPYQVNPDNLISSIAEQVNDGKLKGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+VI L+R   A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SKIEDQSSDRAGLRIVITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S N E AR 
Sbjct: 360 QMIRYYVAHQIDVIIRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL+ L R  I +
Sbjct: 420 GLMD--------------------------LLDIDEIQADAILAMQLRRLSALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  V D+    RRTRI+    D+ DED I R
Sbjct: 454 ELAEIEREIADLKDILERPERQRAIVRDELKEVVDKYGDDRRTRIIPAEGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIRISGYE---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL  F      G  A+ L   DE++    C+ ++D+LL +K GQ +RF      +
Sbjct: 631 LVKKSKLDAFDSNRSGGIAAINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRQTSGVQGMRFNDDDELLSLTVVRP------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + F+L  +  G+ KRT   ++    R GKG+       
Sbjct: 720 ----------------------DTFLLVATSGGYAKRTDIEEYSAQGRGGKGVLTIQHDP 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V+ + +I  ++  G +IR    ++R A R TKGV + + +  + ++++
Sbjct: 758 --KRGDLVGALVVDIDSEIYAITSGGGVIRTKAKQVRKAGRQTKGVRLMNLSDGDNLIAI 815

Query: 895 ERIRESEIVDEAESTE 910
            R  +    DE  + +
Sbjct: 816 ARNADEPDEDEGAADD 831


>gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
 gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
          Length = 822

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 553/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+  LDEV+ IIR S     A+ +LM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 EKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASENN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  ++++ N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+   +E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDSARIVTFALVEPEEVEQASEDQE 818


>gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 876

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/913 (41%), Positives = 545/913 (59%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   N  Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R LL++GQGNFGSV
Sbjct: 57  LGIGNTSNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL KDTVD   N+D + +EP V+  + PN+LVNG  
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNPDIDLD LM+ I+ PDFPTGA I G  G++ A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE      ++IVVTEIPY VNKA ++E IAELV+E +I  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIESDDN-HDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+V++LKR ++A+VILN+L++ T+LQS FSVN +AL   +P    L   +K 
Sbjct: 296 DESGRQGMRIVVDLKRDSNANVILNKLFKMTALQSSFSVNCIALVKGRPRLLGLKDCVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRT+Y L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L QR
Sbjct: 356 FVEHRHDVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     ILS       ++K ELL VK++    RRT I     +   ED    + +V+
Sbjct: 450 ERMIDYYNQILSDPELCKKVMKDELLEVKEKYGDARRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KR PLS +R Q RGG G  G   R++DF  +++  + H ++L F+  G  Y 
Sbjct: 510 TVSHLGYIKRTPLSDFREQARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++ + + +   +      DE   N+ YV+FATK+G V+
Sbjct: 570 LKCYEIPEGDRNSKGRAIQNMLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ L   DE++ V     EN++++  + G+  RF  + IR    
Sbjct: 630 KTCLEAYSRPRANGVIAINLAEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTMG- 688

Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG+ L    D V+ M  V +AD +                              
Sbjct: 689 RTATGVRGMKLDGDDDAVVGMVPVNNADVE------------------------------ 718

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE+G+GKR+   D+RI+NR GKG++   +++  +
Sbjct: 719 ---------------------TVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D + +++++  G  IR+ V ++R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVAIKNVTDENDLMIINKSGIAIRLSVADVRVMGRATQGVRLINLSKKNDIIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEASVEEE 828



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 109/273 (39%), Gaps = 13/273 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+  L  Y   R    G   + + + D + D+ + +    ++
Sbjct: 611 EEFINSHYVIFATKNGTVKKTCLEAYSRPR--ANGVIAINLAEGDELVDVRLTNGENELI 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      A G  +  +      + +  ++P        +   V+ 
Sbjct: 669 IANRNGRACRFHENTIRTMGRTATG--VRGMKLDGDDDAVVGMVPVNN----ADVETVMV 722

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R+++ D+   NR GK    L   +    +++++  T END+++  K G  +R
Sbjct: 723 VSEQGYGKRSQVEDYRITNRGGKGVKTLAITEKTGRLVAIKNVTDENDLMIINKSGIAIR 782

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +RV   R + GVR I+L+K + +I+ ++     ++ +  +         ++    
Sbjct: 783 LSVADVRVMG-RATQGVRLINLSKKNDIIA-SVCKVMSSELEASVEEESRAQWAKKSEEI 840

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
             +   S  +  +VE    EE   +       +
Sbjct: 841 KADTTGSAASVETVESADDEEVKADTSDDNTPV 873


>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
 gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 871

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/907 (41%), Positives = 546/907 (60%), Gaps = 49/907 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ      L  D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  VAVI NP+I    LM+ + GPDFPTGA ILG + I+ AY TGRGSI +R
Sbjct: 185 PHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGTSAIREAYTTGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV++IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  IAD+RDESDR G
Sbjct: 245 GVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  TL   L  F+ FR E
Sbjct: 305 MRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQVLTLKQFLSVFLDFRIE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA++ LD ++ +IR +P+  TA+ EL+         
Sbjct: 365 SIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELIT-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSEVQ  AIL+++L RLT L  D IR E + L  +I + 
Sbjct: 417 ------------------TYGLSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ E+  +K    TPRRT I+ G  +++D D I  E  ++ V+  GY
Sbjct: 459 QDILARRERVLEIIETEVAQLKTNFATPRRTVILPGEGELDDRDLIANEKAIILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G++   ++D+D +        H S+LFFS  G VY  + +++P
Sbjct: 519 IKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++ +L+ F  
Sbjct: 579 ASSRTSRGTPIVQMLPIPKEEKITSIVPVDEFSSEE---YLVMLTKGGNIKKTELAAFSH 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V     E+ +++ ++ G  + F  +  ++    R + GV+ 
Sbjct: 636 IRANGLIAISLEEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKA 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+++ M I+             ++ +       + D E I +++ +       +
Sbjct: 696 MKLKNKDELVGMDILPA---------AILETLDIVTEAETEDIEAIETIETEDIEITETT 746

Query: 787 EERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           EE  +         ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +
Sbjct: 747 EESAEVPSTGIVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATL 806

Query: 845 FPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V ND+D+I++V+++G +IR  VN I I SR+  GV +    +D+ +  V  +      
Sbjct: 807 RIVNNDDDEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDAA- 865

Query: 904 DEAESTE 910
            +AE  E
Sbjct: 866 -DAEEAE 871


>gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
 gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
          Length = 894

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/848 (46%), Positives = 537/848 (63%), Gaps = 31/848 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   PVV+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     RE I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+V+E
Sbjct: 246 ANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +VILN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFGLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +I+ +P P+ AR  L+   W   D+  +++ 
Sbjct: 366 IFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +              G  +L+E Q +AILELRL RLTGL  + I  E   L   I+
Sbjct: 426 GGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIE 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I+ EL +VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLLILGSPERLMEVIRDELHAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+    M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E E+   + YV  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVREYEA---DKYVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR------VFAGR 719
            +   +G IA+ L   D ++ V+     +DI+L +K G+ VRF  SA           GR
Sbjct: 663 SRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGMGR 722

Query: 720 NSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            + GVRG+ LA GD+V+S+ +      VL    +   +   +    A+ R   G      
Sbjct: 723 TAAGVRGMKLAAGDKVVSLIVPHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKV 782

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +N S V    +E+            + ++  G   RT   +     R+ +G+     +
Sbjct: 783 SDRNGSVVGAVQAED--------GDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTA 834

Query: 834 KINEIGAL 841
               +  L
Sbjct: 835 DKELVVGL 842



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 110/276 (39%), Gaps = 18/276 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+ PL+ +   R    G   V +RD D +  + 
Sbjct: 628 ERITAILPVREYEADKYVFMATADGTVKKTPLTDFSRPRSA--GIIAVNLRDGDSLIGVD 685

Query: 582 IVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGK--ALINILSLNQGERITTIMPFP 637
           I ++   ++ FS  G V  + E       G  +  G+  A +  + L  G+++ +++   
Sbjct: 686 ITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMKLAAGDKVVSLIV-- 743

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQEN 694
                 N   V+  T++G  +R  L+++   +R+  G +++K+      ++        +
Sbjct: 744 ----PHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGD 799

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           + ++ T  G  VR  ++ +    GRN+ GV  I  A  + V+ +  +   +    E    
Sbjct: 800 EFMMITNGGTLVRTRVAEV-SRVGRNTQGVTLIRTADKELVVGLQRIDELEVVELEEDAI 858

Query: 755 M--KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +      A       DT+     + DS    +  EE
Sbjct: 859 VDGDVEVAVDGEQVVDTDAAQQPEADSEQGESTDEE 894


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/890 (41%), Positives = 548/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +  + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +I+NP++ +  LM  I+GPDFPT  +I+G +GIK+AY TGRG I++R
Sbjct: 183 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    + +IV+TEIPYQVNK+ ++E +A+LV+ KRI  I+D+RDESDR G R+V
Sbjct: 243 AKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+A++ LNQLY++T +Q  F V M+ L   +P+   L  +L  ++ F+EE++ R
Sbjct: 302 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+  +DEV+ +IR S   E AR  L+ +           
Sbjct: 362 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++S LL +IK EL+ ++D+    RRT I     D+  ED I  E++V+T++H GY+KR+
Sbjct: 456 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH+ +LFF++ G VYK K + +P    
Sbjct: 516 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L+  E+I  ++ F E +   ++ Y + ATK G V++ +++ +  I ++
Sbjct: 576 TAKGTNLVNLLPLDGDEQIQAVISFKEID---DDNYFIMATKRGLVKKTEINQYASIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+  T ++++L+ TK G  +RF    +R   GRN+ GV+ I+L K
Sbjct: 633 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M I  + +                                              
Sbjct: 692 KDIAVAMDIASNKED--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL VSE GFGKRT   ++ I  R GKGI     ++  + G +V    V D D
Sbjct: 707 --------ILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V++I   SR   GV +  T +++RVV++ +I  +E
Sbjct: 757 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 806



 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 9/218 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADAD 747
              +E  ++  T  G   R           R   G++ ++  + D V  + I   H+   
Sbjct: 496 LIEEEEVVITLTHAGYIKRISA-DTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHIL 554

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--KEQFILTVSE 805
           +      +  +       +G T + T+L N   ++G+   +     K    + + +  ++
Sbjct: 555 FFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDGDEQIQAVISFKEIDDDNYFIMATK 614

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+T    +    ++G  + A ++   +E   L+ V     + ++++ +  G  IR 
Sbjct: 615 RGLVKKTEINQYASIRKNG--LNAINLRDGDE---LIGVKMTTGDSEVLIFTKNGYAIRF 669

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              ++R   R T GV   +  K +  V+++     E +
Sbjct: 670 SEKDVRPTGRNTTGVKAITLRKKDIAVAMDIASNKEDI 707


>gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/897 (41%), Positives = 562/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS  M+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFTMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+ +  + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R    R + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNMG-RTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  ++ G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVA--DKNGSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/860 (42%), Positives = 534/860 (62%), Gaps = 28/860 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +  QVI+M +     A    +      ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSVAGSVLTATENGYGKRTPISE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   E  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVF 845
           G+    V + N++  L  V 
Sbjct: 838 GVTLISVGEGNKLSGLQRVM 857


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/853 (45%), Positives = 547/853 (64%), Gaps = 29/853 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIVDAYKTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ ++R +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YL+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL  VK++    RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYEA---DKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+    +NDI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           GI LA+ D+V+S+ +      VL    +   +   +    A+ R   G      S +N S
Sbjct: 722 GIKLAESDKVVSLIVPHNEGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGS 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V    +E+            + ++  G   RT   +     R+ +G+     ++  +  
Sbjct: 782 VVGAVQAED--------GDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEDEQ-- 831

Query: 840 ALVAVFPVNDNDQ 852
            +V +  +++ ++
Sbjct: 832 -VVGLQRIDEPEE 843


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/855 (44%), Positives = 543/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R  
Sbjct: 186 NLAEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYALTQLQVTFGINMVALHQGQPKLLNLKDILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ + W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL S  RL+ +I++EL++VK+  +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI+L +GD VIS+ +      +L    +   +   +     + R   G      S +N 
Sbjct: 722 RGINLGEGDSVISLIVPRGEGDILTVTQNGFGKRTAVTEYPTKSRATQGVISIKVSERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     E   Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 QVVGAVQVETSDQ--------IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    +++++
Sbjct: 834 VGLQRVAEPVEDEEL 848



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 107/272 (39%), Gaps = 24/272 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYEEGRHVFMATASGTVKKTALTEFSRPRSA--GIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D +  + +      V+ FS+ G V +    ++      A G   +  ++L +G+ + +
Sbjct: 678 EGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATG---VRGINLGEGDSVIS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++  P  E       ++  T++G  +R  ++++   +R+  G I++K+     +++    
Sbjct: 735 LI-VPRGEGD-----ILTVTQNGFGKRTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--ADAD 747
               + I++ T  G  VR  +S + V   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 789 VETSDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            D      + +      +    +    + +D+
Sbjct: 848 LDSLEPGAEAVEEDTTPLDDGDDAAEPVDDDN 879


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/890 (41%), Positives = 548/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +  + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 4   DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +I+NP++ +  LM  I+GPDFPT  +I+G +GIK+AY TGRG I++R
Sbjct: 184 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    + +IV+TEIPYQVNK+ ++E +A+LV+ KRI  I+D+RDESDR G R+V
Sbjct: 244 AKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+A++ LNQLY++T +Q  F V M+ L   +P+   L  +L  ++ F+EE++ R
Sbjct: 303 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+  +DEV+ +IR S   E AR  L+ +           
Sbjct: 363 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 412 ---------------FNLSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++S LL +IK EL+ ++D+    RRT I     D+  ED I  E++V+T++H GY+KR+
Sbjct: 457 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH+ +LFF++ G VYK K + +P    
Sbjct: 517 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L+  E+I  ++ F E +   ++ Y + ATK G V++ +++ +  I ++
Sbjct: 577 TAKGTNLVNLLPLDGDEQIQAVISFKEID---DDNYFIMATKRGLVKKTEINQYASIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+  T ++++L+ TK G  +RF    +R   GRN+ GV+ I+L K
Sbjct: 634 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M I  + +                                              
Sbjct: 693 KDIAVAMDIASNKED--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL VSE GFGKRT   ++ I  R GKGI     ++  + G +V    V D D
Sbjct: 708 --------ILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V++I   SR   GV +  T +++RVV++ +I  +E
Sbjct: 758 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 807



 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 9/218 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADAD 747
              +E  ++  T  G   R           R   G++ ++  + D V  + I   H+   
Sbjct: 497 LIEEEEVVITLTHAGYIKRISA-DTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHIL 555

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--KEQFILTVSE 805
           +      +  +       +G T + T+L N   ++G+   +     K    + + +  ++
Sbjct: 556 FFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLLPLDGDEQIQAVISFKEIDDDNYFIMATK 615

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+T    +    ++G  + A ++   +E   L+ V     + ++++ +  G  IR 
Sbjct: 616 RGLVKKTEINQYASIRKNG--LNAINLRDGDE---LIGVKMTTGDSEVLIFTKNGYAIRF 670

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              ++R   R T GV   +  K +  V+++     E +
Sbjct: 671 SEKDVRPTGRNTTGVKAITLRKKDIAVAMDIASNKEDI 708


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/855 (44%), Positives = 544/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLSEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+
Sbjct: 246 AEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTFI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL++VK+  +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEE---GRHVFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI+L +GD VIS+ +      +L    +   +   +     + R   G      S +N 
Sbjct: 722 RGINLGEGDGVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     E   Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 QVVGAVQVETTDQ--------IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    +++++
Sbjct: 834 VGLQRVAEPVEDEEL 848


>gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
 gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
          Length = 822

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 553/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S  GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L V+EKG+GKRTS+ ++    R GKGI+  +++  ++ G L  +  V+ +
Sbjct: 705 ----TEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANIT--DKNGNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+    E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818


>gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 841

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/891 (41%), Positives = 545/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDNYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI M ++   +                                           
Sbjct: 693 LREGDEVIGMEVLEDDEK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 711 -----------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 808


>gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
 gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
          Length = 903

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/901 (38%), Positives = 512/901 (56%), Gaps = 89/901 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           I  D ++   +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G 
Sbjct: 35  IERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGY 94

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ Y KCAR+ G+VMG YHPHG++AIYDAL R+ QDWS+R  L++GQGNFGS   D  
Sbjct: 95  RPDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGA 154

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+   A  ++ D+ +DTVDF PNYDG   +P VL +R+PN+LVNG  GIAVG
Sbjct: 155 AAPRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVG 214

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAY 241
           MAT IP HNL EV +G    + +P+I  + L+E    II+GPDFPTG++I+G  GI++AY
Sbjct: 215 MATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHRGIEDAY 274

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI++R + ++E+    R+ +VVT++PYQVN   +  KIA+LV++ +I  IAD+ D
Sbjct: 275 RTGRGSIIMRAIVNVEEIKN-RQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIAD 333

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           E+  R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P    L G ++ 
Sbjct: 334 ETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDDVPRTLPLDGFIRH 393

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+ RRT + L KA    H+L G   A+  LDEV+ +IR S   E AR  L+Q 
Sbjct: 394 WVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ- 452

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                     + + E Q +AIL ++L RL  L R+ I+ + + L
Sbjct: 453 -------------------------LLDIDETQAQAILNMQLRRLAALERERIQQQHDEL 487

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E   IL+S  R   I+ +EL  + D+    RRT IV    DM  ED I  ED+VV
Sbjct: 488 QELIDEYQAILASEVRQREIVSEELQGIVDKYGDERRTEIVPFDGDMSMEDLIPEEDVVV 547

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY KR    +YR+QRRGGKG  G  +R ED V   F  +TH  +LFF++LG VY+
Sbjct: 548 TITRGGYAKRTRTDLYRSQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYR 607

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + LP GS  ++G+ + N+L+   GE+I  ++   + E++    Y+V AT+ G V++ 
Sbjct: 608 AKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVLAIHDYEAAD---YLVLATRAGLVKKT 664

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGR 719
           +L D+      G IA+ L   DE++        +D+LL ++ G  VRF  +   +   GR
Sbjct: 665 RLRDYDSPRSGGLIAINLREGDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPMGR 724

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GV G+    GD ++SM+ V                                      
Sbjct: 725 STSGVTGMKFRPGDTLLSMSRVPAE----------------------------------- 749

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +  V E G  KRT   ++R+  R G GI+   +S+  + G
Sbjct: 750 ----------------TDVDVFVVFENGLAKRTPVSEYRVQGRGGYGIQVAKLSE--KGG 791

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    V  ND++++V +KG ++R  V+E+R  SR+T+GV   +  K + +V+V R  E
Sbjct: 792 DLVGALTVTGNDEVMVVMEKGKIVRSRVDEVRHTSRSTQGVRFAAPDKGDAIVAVARNAE 851

Query: 900 S 900
           S
Sbjct: 852 S 852


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/842 (44%), Positives = 533/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+D+++ +IR +  P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L   ERIT I+P  E     ++ ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEDNERITAILPVTE---FSDDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF    +R    R + GVR
Sbjct: 663 SNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L +GDQV+S+ +      +L    +   +   +    A+ R   G      S +N  
Sbjct: 722 GMKLMEGDQVVSLIVPKTDGDILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNGR 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V    ++E            + ++  G   RT   +     R+ +G+     S+  ++ 
Sbjct: 782 VVGAVQADE--------GDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVV 833

Query: 840 AL 841
            L
Sbjct: 834 GL 835



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 163/436 (37%), Gaps = 33/436 (7%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E ++ +R       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAELMHILASTERLMEVIREELQAVR--DGYGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDLEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEDNERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   V +RD+D +  + I +  +
Sbjct: 634 LPVTEFSDDKFIFMATGDGTVKKTSLDQFSNVRS--NGLIAVNLRDDDSLIGVDITNGDS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G   +  + L +G+++ +++    D        
Sbjct: 692 EIMLFSKSGKVVRFNEDQVRAMGRTASG---VRGMKLMEGDQVVSLIVPKTDGD------ 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  L+++   +R+  G +++K+      ++      + ++ ++ T  G 
Sbjct: 743 ILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +     RN+ GV  I  ++ +QV+ +  +   +            M+     
Sbjct: 803 LVRTRVAEVSQVG-RNTQGVTLIRTSEDEQVVGLQRIEEIEESELLEGEEGSEMTENVDA 861

Query: 765 ISGDTEEITSLKNDSS 780
           +     E  +  +  +
Sbjct: 862 VEAPAPEAPTEGDSEA 877


>gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
 gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
          Length = 818

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/901 (40%), Positives = 555/901 (61%), Gaps = 86/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  + EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQTEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   R+  IIK+EL  VK +    RRT + +  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 SKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRKGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R    R++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNTDVIIGTKYGYSVRFNEAVVRNMG-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V                                                 
Sbjct: 693 EGDKVVGASVV------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R+GKGI+  ++++ N  G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE-AEST 909
           + +++++D G +IR  V  I    R+T+GV +    +D ++V+   ++  +  +E  E  
Sbjct: 758 EDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVTFTTVQPDDKDEEVVEEN 817

Query: 910 E 910
           E
Sbjct: 818 E 818


>gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 816

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/893 (41%), Positives = 548/893 (61%), Gaps = 84/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  NK 
Sbjct: 4   EPQENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+A++YDA+ RMAQDWSLR  L++GQGNFGS+DGD PAA RY
Sbjct: 64  FKKSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L DL KDTVDF+ N+D S QEP VL A+ P +L+NG  GIAVGMATN+
Sbjct: 124 TEARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNM 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A I+N DI ++ LM+ I+GPDFPT  +I G  GI+ AY TGRG +++
Sbjct: 184 PPHNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGSQGIREAYRTGRGKVLM 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE T   +EQI+VTEIPY VNKA ++E+ A+LV EK+I  I+D+RDESD+ G R+
Sbjct: 244 RAKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V +LKR A   V+LN LY+ TSLQ  F VN VAL   KP+   L  +++ FVA R EV++
Sbjct: 304 VYDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGKPQTLNLKELIQHFVAHRHEVLL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+TKY LN+A+ R H+L G  IA+ NLD ++ +IR S + E A++ L+Q           
Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQ----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q +AILELRL RLTG+ RD I  E       I+    I
Sbjct: 413 ---------------TYQLSEQQAKAILELRLQRLTGMERDKILQEHRETTQLIERLQLI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS R   + +IK EL  +K++    RRT I     D+  ED I  EDMV+T+S  GY+KR
Sbjct: 458 LSDRDLQMTLIKNELAELKEQYGDARRTVIEHNTDDITLEDMIAEEDMVITISQQGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS YR Q RGG G      +++D++T LF+ STH  +L F++LG V+ +KV+ LP GS
Sbjct: 518 TPLSEYRIQNRGGVGARSTATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N++ +  G+++ +++      DE+  N+ Y++  T  G +++  L  +I  
Sbjct: 578 KSSKGRAIQNLIPIAPGDQVQSVIKVRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINP 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+K++  D +L+V+    +N +++  + G+ + F    +R    R S GVRGI+
Sbjct: 638 RTNGIQAIKINEGDRLLTVKLTKGDNHVIIALRSGRAIHFHERDVRSMG-RVSTGVRGIT 696

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA   D+V+ M  V   D +                                        
Sbjct: 697 LAGPEDRVVGMVTVYKPDIE---------------------------------------- 716

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+EKG GKR++  D+RI+ R GKG++  ++++  + GAL A+  V
Sbjct: 717 ------------LLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITE--KTGALAAIEAV 762

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            D D++++++  G  IR+ V+ +RI  R T+GV +    + + + S+ +I E+
Sbjct: 763 TDADELLIINTSGIAIRIEVSTLRIMGRNTQGVRLIRLNEGDAITSIAKITEN 815


>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
 gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
 gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
          Length = 830

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/902 (39%), Positives = 551/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I+ EM+  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++Y AL R+AQD++LR  +++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  ++ D+GK+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG   +IDNP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG I +R
Sbjct: 183 PHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE     +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+V
Sbjct: 243 AKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+ A++++ILNQLY++T LQ  F +NM+AL   +PE   L  IL+ ++ F+E+V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA+ ++DEV+ +IR S   + A+  LM +           
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+L+L RLTGL R+ I +E N L   I E   IL
Sbjct: 412 ---------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +++L II+ EL  +K +    R+T I     D++ ED I  E++V+T++H GY+KR+
Sbjct: 457 ADENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +Q+RGG+G   +  +++DFV ++FI STH ++LFF++ G +YK K +++P    
Sbjct: 517 NADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L L+  E+I  ++   E +      ++V  TK G +++  +  +  I +S
Sbjct: 577 AAKGTNVVNLLQLDPNEKIQAVISIKEFDEES---FLVMCTKKGIIKKTVVGMYKNIRKS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE++SV     ++DI++ T  G  +RF    +R    RN++GV+GI+L +
Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPLG-RNALGVKGITLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +                           +++ +   +N      ++ E +C 
Sbjct: 693 DDFVVGMEVPNQ------------------------ESDVLVVSENGFGKRTHVGEYKC- 727

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                                        +R GKG+    VS  ++ G LV V  V D D
Sbjct: 728 ----------------------------QHRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE---IVDEAES 908
           +++L+++ G  IR+ V++I   SR   GV +     DE+V+++ +I + +   + D  E 
Sbjct: 758 ELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSEEV 817

Query: 909 TE 910
           +E
Sbjct: 818 SE 819


>gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17]
 gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17]
          Length = 881

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/913 (41%), Positives = 551/913 (60%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E++      +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDENL----TIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSV
Sbjct: 57  LGIGNTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNLGEV+DGC A IDNP+IDL+ LM  I+ PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNMPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE +    ++IV+TEIPY VNKA ++E IAELV+E +I  I++  
Sbjct: 237 YETGRGRVVMRAKAEIE-SDESHDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DESGRQGMRIVIDVKRDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL+       ++K EL  VK++   PRRT I     +   ED    + +V+
Sbjct: 450 ERMIDYYNRILNDPELCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH+GY+KR PLS +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHMGYIKRTPLSEFREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++   +++   +     +DE   N+ YVVFATK+G V+
Sbjct: 570 LKCYEIPEGDRNSKGRAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ +   DE++ V      N++++  + G+ VRF  S IR    
Sbjct: 630 KTLLEAYSRPRANGVIAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTMG- 688

Query: 719 RNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRG+ L +GD  V+ M +V  ++ +                              
Sbjct: 689 RVSTGVRGMRLDEGDDAVVGMIVVNDSETEN----------------------------- 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE G+GKR+   D+RI+NR GKG++   V++  +
Sbjct: 720 ----------------------VMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVAIKNVTDDNDLMIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEATVEEE 828



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 116/268 (43%), Gaps = 17/268 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D++  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + + +  
Sbjct: 609 DDEEFINSHYVVFATKNGTVKKTLLEAYSRPR--ANGVIAINIVEGDEVVDVRLTNGNNE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     +      + G  +  +      + +  ++   + E+      V
Sbjct: 667 LIIANRNGRAVRFHESTIRTMGRVSTG--VRGMRLDEGDDAVVGMIVVNDSETEN----V 720

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  +++G  +R+++ D+   NR GK    L   ++   +++++  T +ND+++  K G  
Sbjct: 721 MVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTEKTGRLVAIKNVTDDNDLMIINKSGVV 780

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHMSA 760
           +R  ++  RV   R + GVR I+LAK + VI+     M+  L A  + + R  + K    
Sbjct: 781 IRLAVADCRVMG-RATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWAKKSDE 839

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEE 788
            R+  + D    T+ ++D   +     E
Sbjct: 840 IRQDATADGSGGTAGEDDPDEDEGNGGE 867


>gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
 gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
          Length = 881

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/913 (40%), Positives = 551/913 (60%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E++      +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDENL----TIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSV
Sbjct: 57  LGIGNTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNLGEV+DGC A IDNP+IDL+ LM  I+ PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNMPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE +    ++IV+TEIPY VNKA ++E IAELV++ +I  I++  
Sbjct: 237 YETGRGRVVMRAKAEIE-SDESHDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DESGRQGMRIVIDVKRDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL+       ++K EL  VK++   PRRT I     +   ED    + +V+
Sbjct: 450 ERMIDYYNRILNDPELCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH+GY+KR PLS +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHMGYIKRTPLSEFREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++   +++   +     +DE   N+ YVVFATK+G V+
Sbjct: 570 LKCYEIPEGDRNSKGRAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ +   DE++ V      N++++  + G+ VRF  S IR    
Sbjct: 630 KTLLEAYSRPRANGVIAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTMG- 688

Query: 719 RNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRG+ L +GD  V+ M +V  ++ +                              
Sbjct: 689 RVSTGVRGMRLDEGDDAVVGMIVVNDSETEN----------------------------- 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE G+GKR+   D+RI+NR GKG++   V++  +
Sbjct: 720 ----------------------VMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVAIKNVTDDNDLMIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEATVEEE 828



 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 116/268 (43%), Gaps = 17/268 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D++  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + + +  
Sbjct: 609 DDEEFINSHYVVFATKNGTVKKTLLEAYSRPR--ANGVIAINIVEGDEVVDVRLTNGNNE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     +      + G  +  +      + +  ++   + E+      V
Sbjct: 667 LIIANRNGRAVRFHESTIRTMGRVSTG--VRGMRLDEGDDAVVGMIVVNDSETEN----V 720

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  +++G  +R+++ D+   NR GK    L   ++   +++++  T +ND+++  K G  
Sbjct: 721 MVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTEKTGRLVAIKNVTDDNDLMIINKSGVV 780

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHMSA 760
           +R  ++  RV   R + GVR I+LAK + VI+     M+  L A  + + R  + K    
Sbjct: 781 IRLAVADCRVMG-RATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWAKKSDE 839

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEE 788
            R+  + D    T+ ++D   +     E
Sbjct: 840 IRQDATADGSGGTAGEDDPDEDEGNGGE 867


>gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
 gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
          Length = 852

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 549/916 (59%), Gaps = 99/916 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++G   +
Sbjct: 2   DDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS+R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L+ D+GK+TVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HNL EVV+  V +IDN     +  +D L+++++GPDFPTG +ILG +GIK AY TG
Sbjct: 182 NIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R V++IE     + +IVVTE+PY VNKA ++EKIAEL ++K+I  I DLRDE+ 
Sbjct: 242 RGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETS 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+V+EL+R  +  V+LN L+++T LQ  F V  +AL   +P+   L  +L  ++  
Sbjct: 302 REGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIH 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK+ L+KA  RAH++ GL IA  N+DEV+ IIR S   + A+  LM+R    
Sbjct: 362 QKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMER---- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q++AI+++RL  LTGL R+ +  E   L  +I
Sbjct: 418 ----------------------FGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +   IL+   +LLG+I++E++++ D+    R+T I     DM  ED I   + V+T++ 
Sbjct: 456 AQLKAILADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTK 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +GY+KR+    ++AQ RGGKG  G+   ++D++ ++ + ++H  ++FF++ G VY+ K +
Sbjct: 516 VGYIKRMSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAY 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  +RG A+IN++ L   E+IT ++P  E E   ++ Y+  AT++G V++  + D
Sbjct: 576 EIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYE---DDKYLFMATRNGIVKKTPIKD 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I ++G  A+ L   D+++ V+      DILL TK GQC+RF  + +R   GR ++GV
Sbjct: 633 YENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRS-TGRTTMGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G++LA  D +I+M      +A                                      
Sbjct: 692 IGMNLAPNDVIIAMQTASMGEA-------------------------------------- 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L VS  G GKRT   +F   NR GKG++   +++  + G LV V
Sbjct: 714 ---------------VLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITE--KSGNLVGV 756

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---- 900
             V ++D+++L++ +G +IR+ V+++ +  R T GV + +  +   V S+ ++ E     
Sbjct: 757 KSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVEDKTLM 816

Query: 901 ------EIVDEAESTE 910
                 E  DE+E+++
Sbjct: 817 PPEEAKEENDESENSD 832


>gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 828

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/907 (41%), Positives = 550/907 (60%), Gaps = 91/907 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E     I  V +  +M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E+V+  V +IDN      +  +D L+ I++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + QI+VTE+PY VNKA ++EKIAELVR+K+I  I D+ D S
Sbjct: 242 GRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ I L+R A+A+VILN+LY++T +Q  F V M+AL G  P+  +L+ +L+ ++A
Sbjct: 302 NREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLA 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA  RAH++ GL  A+  +D++++IIR S   + A+  LM     
Sbjct: 362 HQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMD---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T   SEVQ + I+ +RL +LTG+ R+ +  E   L I+
Sbjct: 418 ----------------------TFGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   ILS R+ LL +I+QE+L++ ++    RRT I     D+  ED I +E+ V+ ++
Sbjct: 456 IRELKAILSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGGKG  G+   D+D++ +L + +TH  ++FF+S G VY+ K 
Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+IN+L L   E+IT ++P  E +      Y+  ATK+G V++  + 
Sbjct: 576 YEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFK---KGNYLFMATKNGLVKKTPIE 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    + DI+L TK GQC+RF  + +R   GR S+G
Sbjct: 633 DYENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L + D+VI M +    D                                      
Sbjct: 692 VRGINLLEEDEVIGMQLTCQGD-------------------------------------- 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L VSEKG GKRTS  +F   NR GKG++   +++  + G ++ 
Sbjct: 714 ---------------YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITE--KTGNVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN  ++I++++ +G +IR+    I I  R T GV +     D  V S+ ++RE E  
Sbjct: 757 VKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKE-E 815

Query: 904 DEAESTE 910
           + +E+TE
Sbjct: 816 EISENTE 822


>gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
 gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
          Length = 822

 Score =  769 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 552/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S  GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTVINAKSDEGSDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L V+EKG+GKRTS+ ++    R GKGI+  +++  ++ G L  +  V+ +
Sbjct: 705 ----TEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANIT--DKNGNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+    E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818


>gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
 gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
          Length = 930

 Score =  769 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/938 (39%), Positives = 543/938 (57%), Gaps = 101/938 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M  +  ++NK Y K
Sbjct: 3   ESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR  +++GQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+L+NG  GIAVGMATN+  H
Sbjct: 123 RMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  +NP I  + LM  I GPDFPTG +I GR GI +AY TG+G + +RG 
Sbjct: 183 NLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIYGRAGILDAYRTGKGRLHVRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             IE       + DRE+IV TE+PYQ NKA ++E+IAELVR+K+I  I+++RDESD+ G 
Sbjct: 243 YIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EV
Sbjct: 303 RIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKAR R H+L GL +A+AN+DE++  I+ S N   AR  L+   W +  + 
Sbjct: 363 VTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGSGSVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++      S                 I +  +  LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   L  EI     IL    +L+ II  E++ ++D     RRT I++  +D   ED I
Sbjct: 483 TEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+  Y AQ+RGGKG+S   M+++D +  L + STH +VL F+
Sbjct: 543 PEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--------------- 638
             G V+  + + +PI S  ARG+ L+N++ L+  E +TTI+P P+               
Sbjct: 603 DTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVEELSVKGETSSTD 662

Query: 639 -----------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                      D +     +V FAT +G V+R +L  F  I  +G IA+ L+  D+++S 
Sbjct: 663 ALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSA 722

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  +++L    G+ +RF  +  R    R + GVRG+ L   + + S+ ++      
Sbjct: 723 RITNGSQEVMLFASSGKAIRFNENDARAMG-RTAKGVRGMRLTADEFIKSLVVI------ 775

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                  E+  +E       IL   E G
Sbjct: 776 ---------------------------------------EDDVRE-------ILIACENG 789

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           FGKRT   +F   NR G G+ A   S  N  G LV    V   D IIL+SDKGTL+R PV
Sbjct: 790 FGKRTFIDEFNTQNRGGGGVIAIKTSARN--GELVRATKVEPEDDIILISDKGTLVRTPV 847

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             +  + R T+GV +   +KDE++V++ R+   E  +E
Sbjct: 848 QHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGDNE 885



 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 114/281 (40%), Gaps = 17/281 (6%)

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           +V+   D+ D+        V   +  G VKRV L  + A  R   G   V + + D +  
Sbjct: 664 LVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQF-ANIRS-NGLIAVGLEEGDKLVS 721

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
             I +    V+ F+S G   +            A+G   +  + L   E I +++   +D
Sbjct: 722 ARITNGSQEVMLFASSGKAIRFNENDARAMGRTAKG---VRGMRLTADEFIKSLVVIEDD 778

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDI 696
                   ++ A ++G  +R  + +F   NR G   + + +     E++       E+DI
Sbjct: 779 VRE-----ILIACENGFGKRTFIDEFNTQNRGGGGVIAIKTSARNGELVRATKVEPEDDI 833

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G  VR P+  +   +GRN+ GV  I L+K +++++MA V H + D +      +
Sbjct: 834 ILISDKGTLVRTPVQHVAS-SGRNTQGVTLIRLSKDEKLVAMARVEHEEGDNELIDAMKE 892

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             + +   + G  +      N  + E    E    E    E
Sbjct: 893 DGTFE---VKGQEQMDVDAANSDATETYFDEASHSETDTDE 930


>gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK150]
          Length = 826

 Score =  769 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D     +DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
 gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
          Length = 831

 Score =  769 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/899 (41%), Positives = 546/899 (60%), Gaps = 85/899 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E   I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+  N  
Sbjct: 2   SEGDKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG++++YD + RMAQ+WSLR LL++GQGNFGSVDGD PAA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK +  LL D+ K+TVD + N+D + +EP VL  R PN+L+NG  GIAVGMATN+
Sbjct: 122 TEARMQKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +  I+N DI ++ L++ I+ PDFPTG  I G  G++ A+ TGRG IVI
Sbjct: 182 PPHNLTEVVDGTIQYIENNDITIEELIKTIKAPDFPTGGTIYGYDGVREAFLTGRGRIVI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  ++IE+    RE I+VTEIPYQVNKA M+ K AE+V +K++  I+ +RDESDR G R+
Sbjct: 242 RAKANIEEV-NGRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LKR A  +++LN+LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R +VVV
Sbjct: 301 VYILKRDAVPNIVLNKLYKYTALQSSFSVNNIALVKGRPQMLNLKEMIHHFVEHRHDVVV 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA DRAH+L GL IA  N+DEV++IIR S + + AR  L+++          
Sbjct: 361 RRTQFELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQ---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AI+E+RL +LTGL +D +R E N L + I +  DI
Sbjct: 411 ----------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  + R + IIK EL+ +KD+    RR+ I     D   ED I  E +V+T+SH GY+KR
Sbjct: 455 LDKKERRMEIIKLELVEIKDKYGDERRSNIEYAGGDFSMEDMIPDEQVVITISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL  Y+ Q RGG G+     RDEDF+ DLF+ + H  +LFF+  G  +  +V+ +P GS
Sbjct: 515 TPLIEYKTQNRGGVGQKASTTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGS 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N++++ Q +++   +   +  DE   NN YV+ ATK G V++  L  + + 
Sbjct: 575 KTAKGRAIQNLINIEQDDKVQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ +   DE+L  +     + ++L  K G+ +RF  S  R    R + GVRGI+
Sbjct: 635 RANGINAINVREDDELLEAKLTNGNSHVMLAVKSGKAIRFEESKTRPMG-RGASGVRGIT 693

Query: 729 LAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA   D+V+ M  V   DA+                                        
Sbjct: 694 LADSKDEVVGMVAVNDMDAN---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL VSE G+GKR+S  D+RI+NR GKG++   ++  ++ G LV +  V
Sbjct: 714 ------------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISIT--DKTGKLVTIKTV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            D D +++++  G  IR+ V  +R+  RAT+GV + +   D+ + +V ++   +   E 
Sbjct: 760 TDTDDLMIINKSGIAIRMEVAALRVMGRATQGVRLINLKGDDTIAAVAKVMNDDTPIED 818


>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
 gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
          Length = 929

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/889 (41%), Positives = 526/889 (59%), Gaps = 87/889 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 80  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  LL
Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP  L AR+PN+LVNG  GIAVGMATNI  HN+GE V+   
Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATC 259

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +ID+PD  +D LM I+ GPDFPTGA+I+G  GI+ +Y TGRGSI +R  +H+E T   R
Sbjct: 260 YLIDHPDATVDELMRIMPGPDFPTGALIMGTDGIRQSYETGRGSITVRAKAHVESTKTGR 319

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPY VNK  + EKIA LV EKRI  I+D+RDES ++G R+VIELK+G    V+
Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+YTSLQ+ F  N +AL    P+R +L  +L+ ++  + +VV RRT++ L KA+ R
Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G   A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 440 AHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 S  QT AILE++L RLTGL RD I  EL  L   I    D+L+   ++LG+IK+
Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKE 533

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +    RRT+I     D+  ED I  EDMVVT++H GYVKR+P+  YRAQ+RGG
Sbjct: 534 EMREIARKFGDKRRTQITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGG 593

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFS+ G VY+ KV  LP G+ QARG A++N+L 
Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLP 653

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
              GE+I +++   E      + Y++FAT HG V++  ++ + +  R G IA+ +   D 
Sbjct: 654 FEDGEKIASVISCRE---FPEDEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDR 710

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L V      + I++ T  G+ + F    +R   GR++ GVRGI +    +V+ M I   
Sbjct: 711 LLGVRRVKPGDKIIMATTAGKAIMFSEDQVRA-TGRDTSGVRGIGMKADAEVLGMEITNG 769

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
           +                                                       +  +
Sbjct: 770 SG-----------------------------------------------------ELFVI 776

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E+G+GKRT   D+   NR G+G+    ++  +  GAL A+  V    +++++++  T++
Sbjct: 777 TERGYGKRTPVADYPEQNRGGQGVYTIQMT--DRKGALAAMKVVGPQHELLIITEGATVL 834

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAESTE 910
           RV   EI    RAT+GV + S  + +RV +V R+   + +  D AE  E
Sbjct: 835 RVKTAEISQTGRATQGVKMMSVDEGDRVTAVARMTAAKKKDGDSAEGEE 883


>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG]
          Length = 870

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/890 (41%), Positives = 543/890 (61%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E ++  ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R    R + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMG-RTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I+                                              
Sbjct: 693 RLRDHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807


>gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 809

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/894 (40%), Positives = 562/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EEFDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  +++V+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLLDMLNYYIEHQKDVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L++R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FGFTEVQAQAILDMRLQRLTGLERQKIEEELAELLKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYV 548
           +L++ + +  IIK+E+L +K++    RRT+I++   +  +E+ +++E D V+T++H GY+
Sbjct: 456 VLANEAMVKEIIKKEILEIKEKYKDERRTKIIQDEQEDFEEEELIQEQDTVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGGKG +G+  R+EDFV ++F+ +TH  +LFF+  G  Y+ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGKGITGISTREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G A++N++ + + E+IT  M   + +      +++  TK+G +++  LS+F   
Sbjct: 576 ASRQAKGTAIVNLIQIGKDEKITACMTVKDFKEG----FLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV   R++ GV+G++
Sbjct: 632 TKAGKKAITLAEDDCLIDVKLTSGNDEMVLVSSGGYCVVFNENDVRVMG-RSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+ M                                                  
Sbjct: 691 LEDGDFVVGM-------------------------------------------------- 700

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E     +++L V+E GFGKR+   ++R + R  KG+    V++  + G +V +  VN
Sbjct: 701 ---EKASDGKYLLCVTENGFGKRSDIEEYRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ ++++ +  R T+GV +     D  +V S+ RI+  +
Sbjct: 756 DEDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDSDSIKVSSIARIKAEQ 809


>gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 854

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/901 (37%), Positives = 512/901 (56%), Gaps = 91/901 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                  ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YD-SASSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG  
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSR 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATN P HNLGE+ +     ++N     +   +A+ME ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + ++Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV     + DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +Y +Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KLSDF      G +A+ L   DE++    C+ E+D+LL +   Q +RF  +   +
Sbjct: 631 LVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+   + D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNEDDRLLSLNVVRP------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + ++L  +  G+ KRTS  ++ +  R GKGI      +
Sbjct: 720 ----------------------DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDR 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G+LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ + ++++
Sbjct: 758 --KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAI 815

Query: 895 E 895
            
Sbjct: 816 A 816



 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 13/250 (5%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + R++L + +  +   +    + +  ++   +   +E+ ++  T+ G   R   + +   
Sbjct: 478 IVRDELKEIVDKHGDARRTRIVPADGQVSDEDLIAREDVVVTITETGYAKRTK-TDLYHS 536

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEI 772
             R   GV+G  L + D V    +    D         R+   K         +   + +
Sbjct: 537 QKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHV 596

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +L      E      + +  +     +L  +  G  K++   DF  SNRSG GI A ++
Sbjct: 597 ANLLAFQPEERIAQVIQIKSYEDAPYLVL-ATRNGLVKKSKLSDFD-SNRSG-GIVAINL 653

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDER 890
            + +E   LV     +  D ++LVS     IR    +  +R   RAT GV      +D+R
Sbjct: 654 REGDE---LVGAVLCSAEDDLLLVSANRQSIRFSATDEALRPMGRATSGVQGMRFNEDDR 710

Query: 891 VVSVERIRES 900
           ++S+  +R  
Sbjct: 711 LLSLNVVRPD 720



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 96/300 (32%), Gaps = 57/300 (19%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   + + D +  V    + +  +   + G      I  I+  
Sbjct: 374 VRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDIDDIQAQ 433

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           A  +    R  +L +   V  +A +    AD ++ +   +      R    +  +     
Sbjct: 434 AILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDA 493

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +     +   ++L  +E  ++T++E G+ KRT +  +    R GKG++   + + +
Sbjct: 494 RRTRIVPADGQVSDEDLIAREDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGLKQDD 553

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS------------------RATK 878
               +   F  + +D I+  + +G + R    E+  AS                  R  +
Sbjct: 554 ---MVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQ 610

Query: 879 ------------------------------------GVVIFSTAKDERVVSVERIRESEI 902
                                               G+V  +  + + +V        + 
Sbjct: 611 VIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDD 670


>gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985]
 gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985]
          Length = 826

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/916 (38%), Positives = 512/916 (55%), Gaps = 96/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       I  V +  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDPTDPT--PSRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+ AIYDAL RMAQ WSLR  L++GQGNFGS 
Sbjct: 59  QDQGFRPDRGYVKSARPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  ++ D+ ++TVDF PNYDG  +EP VL AR PN+LVNG G
Sbjct: 119 GNDGAAAMRYTEARLAPLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D     +++ D      L+A+ EI++GPDFPT  +I+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIVGTDG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           + +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN   M+  IAE VR+ +I  I
Sbjct: 239 VHDAYTTGRGSIRMRGVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+A+    P    L 
Sbjct: 299 SAIDDETSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++A + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 359 QILRLYIAHQIEVIVRRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 419 GLME--------------------------LLDVDEIQADAILAMQLRRLAALERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +  DIL+   R   I++ EL  + D     RRTRI+    ++ DED I R
Sbjct: 453 ELAEIEEAIADYQDILARPERQRAIVRDELKEIVDRHGDERRTRIIAAEGEVRDEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+L   E+I  ++     E   ++ Y+V ATK G
Sbjct: 573 GRVYRIKAYELPETSRAARGQHVANLLALQTDEKIAQVIHLQTYE---DSPYLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             +++KL++F      G IA+ L   DE++    C+ ++D+LL ++ GQ +RF  +  ++
Sbjct: 630 LTKKSKLTEFDSNRSGGLIAVNLRDEDELVGAALCSSDDDLLLVSEHGQSIRFHANDEQL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+   + DQ+++M +V                                 
Sbjct: 690 RPMGRATSGVLGMRFNEDDQLLAMNVVRDG------------------------------ 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+      +
Sbjct: 720 -----------------------AYLLVATSGGYAKRTALGEYPVQGRGGKGVLTVQYDR 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + +R+++V
Sbjct: 757 R--RGGLVGAVIVDDDTELYAITQGGGVIRTDARQVRRAGRQTKGVRLMNLGEGDRLIAV 814

Query: 895 ERIRESEIVDEAESTE 910
            R  E    D AE  E
Sbjct: 815 ARNDE----DSAEVAE 826


>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
 gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/889 (41%), Positives = 532/889 (59%), Gaps = 89/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSIT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM  MG   N+ Y K A
Sbjct: 6   VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK HPHG++A+YDALARMAQ WS+R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ KDTVDFR N+DGS++EPVVL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ D    +ID+P+  ++ LMEII GPDFPT  +ILG  GI  AY+TGRG I +R  +H
Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+       IVVTE+PYQVNKA + E+IAELV++++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILLK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F +NM+AL  +G +P   TL  +L+ ++  R+EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR+RAH+L GL IA+ NLD V++ IR S   E+AR  LM+              
Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMRN------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q +AILEL+L RL  L R  I  E   +   I E  DIL++
Sbjct: 413 -------------FSLTERQAQAILELQLRRLAALERQKIEEEYREVIKLIAELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IK++L  +K++   PRRTRI+  +  ++ DED I    +++T++  GY+KR  
Sbjct: 460 PRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR QRRGG+G  G++ R++D V  L   ++  ++LFF+  G VY+ K   +P  S  
Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE++T+++   E ++     Y+V AT  G ++R +L ++ Q+  +G
Sbjct: 580 AKGLPLVNLVSLEPGEQVTSMLAVREFDAE----YLVMATVRGKIKRTQLREYSQVRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D +  V       DILLTT  GQ +RF  S +R    R + GV GI+LA+G
Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPMG-RPATGVIGINLAEG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM                                                     +
Sbjct: 695 DRVVSM-----------------------------------------------------D 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +   +L V+ +G GKRT+  ++ +  R+  G+    +   NE   + A   V ++  
Sbjct: 702 LAEEGADLLVVTARGIGKRTALSEYPLKGRATGGVITIKL--RNETDEVAAAAVVREHSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  ++  G ++R   +EI    RAT+GV + + A  +RV ++      E
Sbjct: 760 LTFITTGGMVMRTSASEISRLGRATQGVTVVNVASGDRVAALSVEDPDE 808



 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 15/222 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             + +V  +  G +KR  L  Y +Q R   G   + + + D +  + +   H  +L  ++
Sbjct: 607 DAEYLVMATVRGKIKRTQLREY-SQVRS-NGLIAIGLEEGDVLGWVRVSHGHEDILLTTA 664

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + +   +      A G   +  ++L +G+R+ ++      + +     ++  T  
Sbjct: 665 RGQTLRFEQSEVRPMGRPATG---VIGINLAEGDRVVSM------DLAEEGADLLVVTAR 715

Query: 655 GNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  LS++    R+  G I +KL +  DE+ +     + + +   T  G  +R   S
Sbjct: 716 GIGKRTALSEYPLKGRATGGVITIKLRNETDEVAAAAVVREHSLLTFITTGGMVMRTSAS 775

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            I     R + GV  +++A GD+V ++++    +        
Sbjct: 776 EISRLG-RATQGVTVVNVASGDRVAALSVEDPDENGNGNGAA 816



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 10/147 (6%)

Query: 764 LISGDTEEITSLKNDSSVEGNISE---ERCQELKLKEQFIL-TVSEKGFGKRTSSYDFRI 819
           LI  D   +     D      I +   E   E  + +  ++ T++++G+ KR     +R 
Sbjct: 466 LIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQLPDAYRT 525

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R G+GI+     + + +  L      N  D ++  +D+G + ++  +E+  +SR  KG
Sbjct: 526 QRRGGRGIKGMLTREQDIVRHL---LTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRTAKG 582

Query: 880 ---VVIFSTAKDERVVSVERIRESEIV 903
              V + S    E+V S+  +RE +  
Sbjct: 583 LPLVNLVSLEPGEQVTSMLAVREFDAE 609


>gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
 gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
          Length = 828

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/907 (41%), Positives = 550/907 (60%), Gaps = 91/907 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E     I  V +  +M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E+V+  V +IDN      +  +D L+ I++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + QI+VTE+PY VNKA ++EKIAELVR+K+I  I D+ D S
Sbjct: 242 GRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ I L+R A+A+VILN+LY++T +Q  F V M+AL G  P+  +L+ +L+ ++A
Sbjct: 302 NREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLA 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA  RAH++ GL  A+  +D++++IIR S   + A+  LM     
Sbjct: 362 HQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMD---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T   SEVQ + I+ +RL +LTG+ R+ +  E   L I+
Sbjct: 418 ----------------------TFDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   ILS R+ LL +I+QE+L++ ++    RRT I     D+  ED I +E+ V+ ++
Sbjct: 456 IRELKAILSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGGKG  G+   D+D++ +L + +TH  ++FF+S G VY+ K 
Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+IN+L L   E+IT ++P  E +      Y+  ATK+G V++  + 
Sbjct: 576 YEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFK---KGNYLFMATKNGLVKKTPIE 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    + DI+L TK GQC+RF  + +R   GR S+G
Sbjct: 633 DYENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L + D+VI M +    D                                      
Sbjct: 692 VRGINLLEEDEVIGMQLTCQGD-------------------------------------- 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L VSEKG GKRTS  +F   NR GKG++   +++  + G ++ 
Sbjct: 714 ---------------YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITE--KTGNVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN  ++I++++ +G +IR+    I I  R T GV +     D  V S+ ++RE E  
Sbjct: 757 VKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKE-E 815

Query: 904 DEAESTE 910
           + +E+TE
Sbjct: 816 EISENTE 822


>gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
 gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
          Length = 846

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/904 (41%), Positives = 551/904 (60%), Gaps = 97/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + K ARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKSARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDI-----DLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+D  V +IDN         ++ ++EII+GPDFPTG  ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K++  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G R+VIEL++  +A+V+LNQLY++T LQ  F V M+AL G +P+   ++
Sbjct: 294 ITDLSDQSSREGMRIVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVGKQPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +E+VV RRTKY LNKA++RAH+L GL IA+ N+DEV+RIIR S   + A+ 
Sbjct: 354 ELLGYYLKHQEDVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM++                            L +VQ +AI+++RL  LTGL R+ +  
Sbjct: 414 ELMEK--------------------------FELDDVQAQAIVDMRLRALTGLEREKLEK 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+    IL+    LLG+I++E+L +KD+    RRT I     D+  ED I +
Sbjct: 448 EYAELMAQIERLEAILADEKLLLGVIREEILVIKDKYGDDRRTSIGFDEYDISMEDLIPK 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++ LGY+KR+    ++AQ RGGKG  G+   DED+V +LF+ +TH  ++FF++ 
Sbjct: 508 ENIVITMTKLGYIKRMSDDTFKAQNRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  +RG A+IN+L L  GE+IT ++P    +   +  Y++ ATK G
Sbjct: 568 GRVYRLKGYEIPEASRTSRGTAIINLLQLMPGEKITAVIPI---DYYRDQDYLIMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L +++ + ++G  A+ L   DE++ V+      +I+L TK GQC+RF  + +R 
Sbjct: 625 LVKKTSLREYMNVRKTGLAAITLRDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRA 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRNS+GVRGI+LA  D+VI M +V                                  
Sbjct: 685 -TGRNSMGVRGINLADRDEVIGMQLVTQG------------------------------- 712

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L VSEKG GKRT  ++F   NR GKG++   +++ 
Sbjct: 713 ----------------------HDLLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G ++ +  V+++D+I++++  G +IR+  + I +  R T GV + +    E V S+ 
Sbjct: 750 -KTGNVIGIKAVDEDDEIMIINTDGIIIRMLCSGISVLGRITSGVKLINLKDKETVASIA 808

Query: 896 RIRE 899
           ++R+
Sbjct: 809 KVRD 812


>gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
 gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
          Length = 837

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/904 (37%), Positives = 518/904 (57%), Gaps = 92/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    SD   ++ +T + + +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDNNGSDNLFDR-VTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG++AIYD L R+AQ WS+R  L++GQGNFGS 
Sbjct: 60  FDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ D+ ++TV+F+PNYDG   EP VL +R PN+L+NG G
Sbjct: 120 GNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNPD +     +A ME ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV+ IE   G+R+ I++TE+PYQVN   ++  IAE +R+ +I  I
Sbjct: 240 IQDTYRTGRGSIRMRGVTSIE-EEGNRQVIIITELPYQVNPDNLVASIAEQIRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+VI LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 299 SKIDDESSDRVGMRIVITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + +V+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 359 QMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEART 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + EVQ   IL ++L RL  + R  I +
Sbjct: 419 GLID--------------------------LLDVDEVQADHILAMQLRRLAAMERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L   I +   IL S  R   I++ EL  + D+    RRT+I+    D+ +ED I R
Sbjct: 453 ELAELEETIADLKAILESPQRQRDIVRTELAEIVDKYGDERRTQIIAASGDVSEEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR+QRRGGKG  G  ++ +D V   F+ STH ++LFF++ 
Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNF 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ + + LP  +  ARG+ + N+L    GE+I  ++     +S  +  Y+V AT HG
Sbjct: 573 GRVYRLRAFELPEATRTARGQHVANLLEFQPGEQIAQVIQI---QSYEDAPYLVLATAHG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+      G IA+ L+  D ++  + CT E+D+LL ++ GQ +RF      +
Sbjct: 630 RVKKSRLTDYDTARSGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDETL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+   + DQ++++ +V    +                            
Sbjct: 690 RPMGRATAGVKGMRFREEDQLLALTVVAEDSS---------------------------- 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +   +  G+GKRT   ++    R G G+ A    K
Sbjct: 722 -------------------------LFVATSGGYGKRTPMEEYPTKGRGGLGVVAFKYDK 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    VND+D+I+ ++  G +IR  V++IR + RAT GV +   AK   +V+V
Sbjct: 757 --KRGKLIGALTVNDDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDLAKGNELVAV 814

Query: 895 ERIR 898
           +R  
Sbjct: 815 DRNV 818


>gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
 gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
          Length = 862

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/912 (37%), Positives = 547/912 (59%), Gaps = 87/912 (9%)

Query: 2   TEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           +++ + ++EE+    E  I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 11  SKNNMLTEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRIL 70

Query: 58  FGMM-QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           + M  ++ +  +K   K ARI G+V+GK+HPHG++++Y+A+ RMAQDWS+R  L++GQGN
Sbjct: 71  YDMSAELNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGN 130

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS+DGD PAA RYTE R+QK    ++ D+ KDT+D+  N+D +  EP VL  + P +LV
Sbjct: 131 FGSMDGDSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLV 190

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATN+  HNLGEV+D C A +DNP+I  + L++ ++GPDFPTG +I G  G
Sbjct: 191 NGASGIAVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIYGYEG 250

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++ A  TGRG +V+R  + IE T+  RE IV+TEIPY VNKA M++KIA+L+ EK+I  I
Sbjct: 251 VREALLTGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEGI 310

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           + + DESDR G R+++ LK  A A V+LN LY+ T LQ+ F+VN +AL   +P    L+ 
Sbjct: 311 SYINDESDRNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALVNGRPMMLNLLD 370

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++ FV  R +V+VRRT++ L KA  R H+++GL IA  N+DE++ IIR + NP+ A++ 
Sbjct: 371 LVQHFVEHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAKQA 430

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           +M+R                            LS+ Q  AI+E+RL  LTGL  D +  E
Sbjct: 431 MMER--------------------------FSLSDAQASAIIEMRLRALTGLEHDKLVAE 464

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
            N L  +I    D+L SR   + I+K ELL VK +    RR+ IV    +   ED    +
Sbjct: 465 RNELEAQIAYFNDVLGSRELQMKIVKDELLEVKAKYGDERRSEIVYASEEFNPEDFYADD 524

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MV+T+SHLGY+KR PL+ YR Q RGG G  G   RDEDF+  +++ + H ++LFF+  G
Sbjct: 525 EMVITISHLGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKG 584

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKH 654
             Y  KV+ +P G+  ++G+A+ N++ +   +++   +     +D    NN Y++  TK 
Sbjct: 585 RCYWLKVYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKD 644

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G +++ KL  + +  ++G  A+ +   D+++  +  +   ++++  + G+ +RF  + +R
Sbjct: 645 GTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVR 704

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R   GVRGISL +GD+V+ M  +                                 
Sbjct: 705 PIG-RVGAGVRGISLDEGDEVVGMICIEPN------------------------------ 733

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  Q +L +SE G+GKRT   ++RI+NR GKG++  ++++
Sbjct: 734 ---------------------SSQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITE 772

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+++  V D + +++++  G  IR  V++IR+A RAT+GV I +  + + + SV
Sbjct: 773 --KTGKLISIQAVTDENDLMIINRSGLTIRTAVDQIRVAGRATQGVRIINLREGDAIASV 830

Query: 895 ERIRESEIVDEA 906
             +  +E  + A
Sbjct: 831 IAVPANEEEEPA 842


>gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
 gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
          Length = 875

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/895 (39%), Positives = 516/895 (57%), Gaps = 88/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +  +   I  V ++ EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G   
Sbjct: 29  PEIPQHGRIEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRP 88

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ G+VM  YHPHG++AIYDA+ R++Q WS+R  LI+GQGNFGS   D PAA
Sbjct: 89  DRSYNKCARVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAA 148

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+Q  A  L+ D+ +DTVDF PNYDG   +P VL AR+PN+LVNG  GIAVGMA
Sbjct: 149 PRYTECRMQPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMA 208

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           T IP HNL EV +GC  ++DNP+   +     L+++I+GPDFPTGA+I+GR+GI++AY T
Sbjct: 209 TQIPPHNLREVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIMGRSGIEDAYRT 268

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI +R V  +E+    R  +VVTE+PYQVN  A+  KIAELV+  ++  IADLRDE+
Sbjct: 269 GRGSITMRAVVEVEEIQ-GRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDET 327

Query: 304 D-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
             R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    +   ++ +V
Sbjct: 328 SGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPINAFVRHWV 387

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + EV+VRRT+Y L +A ++ H+L GL  A+  LDEV+ +IR SP  E AR  LM    
Sbjct: 388 DHQVEVIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLMD--- 444

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + EVQ RAIL+++L RL  L R  I +E + L  
Sbjct: 445 -----------------------LLDIDEVQARAILDMQLRRLAALERQKIIDEHDRLQA 481

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I++  DIL++ +R   II +EL ++ ++    RRT IV    ++  ED I  E++VVT+
Sbjct: 482 LIEDLEDILATPARQRTIISEELAAIVEQYGDERRTEIVPSDAEVNMEDLIPDENVVVTI 541

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR+ +  YR+QRRGGKG  G  +R +D V   F   TH  +LFF+  G VY+ +
Sbjct: 542 TRGGYAKRIRVDAYRSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRAR 601

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            W LP GS  ++G+ + NI++    E+I  ++   + +++    Y+V ATK+G V++ +L
Sbjct: 602 AWELPEGSRDSKGQHVANIMAFGPDEKIAQVLTIKDYQAA---PYLVLATKNGLVKKTRL 658

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           +++      G IA+ L   DE++  E  +  +DIL+ ++ GQ +RF  S  ++   GR +
Sbjct: 659 TEYDSPRSGGLIAVNLREGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPMGRAT 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV G+     D++++M +V     D +                                
Sbjct: 719 SGVTGMRFRGDDELLAMRVVPSDAEDAE-------------------------------- 746

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V + G  KRT+   +R+  R G G++    S  ++ G L
Sbjct: 747 ------------------VFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKAS--DKGGDL 786

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V    V   D++++V   G ++R  V+E+R+  R T GV      K E +V+V R
Sbjct: 787 VGALVVGQQDEVMVVMSSGKVVRSRVDEVRMTGRDTSGVRFADPGKKEHIVAVAR 841


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/891 (42%), Positives = 544/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     +  + I +EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRILF M  +G+   K
Sbjct: 3   DTMRGKVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD+S R  L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ K+T+D++ N+D + +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVRMAKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG VA+I+NP+I  + LM  I+GPDFPTG +ILGR GIK+AY+TGRG + 
Sbjct: 183 IPPHNLDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIILGRNGIKDAYSTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE   G++ +I+VTEIPYQVNKA ++E IA LVREK+I  I+DLRDESDR G R
Sbjct: 243 IRAKTEIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  + +V+LNQLY+YT+L+  F + ++AL   +P+  +L  IL  ++ F++EV+
Sbjct: 303 VVIELKRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDHYLEFQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRTKYLL KA  RAH+L GL IA+ NLD V+++IR S   + A+  LM           
Sbjct: 363 IRRTKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNN--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL +LT L RD I  E + L  +I     
Sbjct: 414 -----------------FSLSDKQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L     +L IIK+E+  +K++    RRT I     ++++ED I  E++++T++H GYVK
Sbjct: 457 VLGDEQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YR Q+RGG+G SG+  +++DFV  LF  STH  +LFF++ G VY+ KV+ +P  
Sbjct: 517 RVPLSTYRNQKRGGRGISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S QARG A++N+L+++  E IT ++P  E      + Y+ F TK G  ++  LS+     
Sbjct: 577 SRQARGTAIVNLLAIDPDEHITAVIPIQE---FTEDDYLFFVTKQGVAKKVILSELKAYR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L+  DE++ V     + +I+L T+ G  ++F    +R    RNS GV+GISL
Sbjct: 634 KDGLIAINLNEDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSMG-RNSRGVKGISL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M I                           +++ +   +N       +SE R
Sbjct: 693 KDNDRVIGMDIAQE------------------------NSDLLIVSENGYGKRTPVSEYR 728

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            Q                             +R GKGI     S+  + G L     VN+
Sbjct: 729 TQ-----------------------------SRGGKGIYTFKPSE--KSGNLAGCIVVNE 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++IILV+ +G + R  V  I   SR T+GV +     D++VVS+  I ES
Sbjct: 758 DEEIILVTAQGVINRQQVEGISQMSRRTQGVRLIKLKDDDQVVSLA-IPES 807



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 16/200 (8%)

Query: 716 FAGRNSVGVRGISLAK-----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            + + +  +  + L K      D++      L    DY  R+   + +     +I  + +
Sbjct: 416 LSDKQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLN--IIKEEIQ 473

Query: 771 EITSLKNDSS---VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           EI    +DS    +     E   ++L   E+ I+T++ +G+ KR     +R   R G+GI
Sbjct: 474 EIKEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGI 533

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-- 885
                   + +  L A    + ++ I+  ++KG + R+ V EI  ASR  +G  I +   
Sbjct: 534 SGMTTKNDDFVEHLFAT---STHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLA 590

Query: 886 -AKDERVVSVERIRESEIVD 904
              DE + +V  I+E    D
Sbjct: 591 IDPDEHITAVIPIQEFTEDD 610


>gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146]
 gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 878

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/854 (44%), Positives = 541/854 (63%), Gaps = 28/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++ 
Sbjct: 366 TIFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLA 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALAE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA  D+V+S+ +      +L    +   +   +     + R   G      + +N 
Sbjct: 722 RGIKLAGDDRVVSLIVPHGEGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S V     E+  Q        I+ +++ G   RT   +  I  R+ +G+     ++   +
Sbjct: 782 SVVGAVQVEDSDQ--------IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHV 833

Query: 839 GALVAVF-PVNDND 851
             L  V  PV+D D
Sbjct: 834 VGLQRVVEPVDDED 847



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 98/256 (38%), Gaps = 22/256 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYAEGVNVFMATASGTVKKTALAEFSRPR--AAGIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D D +  + +   +  V+ FS+ G V + K   +      A G   +  + L   +R+ +
Sbjct: 678 DGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGDDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++             ++  T++G  +R+ ++++   +R+  G I++K+      ++    
Sbjct: 735 LIV------PHGEGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V+    D D
Sbjct: 789 VEDSDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDEHVVGLQRVVEPVDDED 847

Query: 750 ERICYMKHMSAQRRLI 765
                         ++
Sbjct: 848 LDSIDGSAAEGDDEIV 863


>gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 848

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/902 (41%), Positives = 552/902 (61%), Gaps = 85/902 (9%)

Query: 1   MTEHIISSDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M E   + +     G I  ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+G
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M+ +GV   K Y K ARI G+V+GKYHPHG++++YDA+ R+AQDWS+R  L++GQGN+GS
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL+K A  +L D+ KDTVDF+ N+D S +EP VL  R PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTEARLKKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVVDG VA IDN +I++  LM+ I+GPDFPTG +I G  G+K 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTVAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A  TGRG +V+R  + IE T   RE I+VTEIPYQVNKA M+++ AELV EK+I  I+++
Sbjct: 241 ACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G+RVV ++KR A+A+V+LN LY+YT+LQ+ FSVN +AL   +P    L  ++ 
Sbjct: 301 RDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIH 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV+RRTK+ L +A  RAH+L G  IA+ +LDEV+++IR S  PE AR  LM+
Sbjct: 361 EFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++Q RAIL++ L RLTGL RD I+ E N 
Sbjct: 421 R--------------------------FALSDLQARAILDMTLRRLTGLERDKIKEEYNE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I+   ++LS     + IIK ELL +KD+    RR+ IV    DM  ED I  E++V
Sbjct: 455 LMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH  YVKR PLS Y+ Q RGG+G  G   R+EDF   +   S H  +LFF+  G  +
Sbjct: 515 ITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCF 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657
             + + +P GS  +RG+AL NI+++ + E+I   +      D+    N +++  TK G +
Sbjct: 575 WLRAFEIPEGSRTSRGRALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  + +   +G  A+ ++  D+++        ++I++  + G+ +RF  S +R   
Sbjct: 635 KKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPMG 694

Query: 718 GRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            R + GVRGI+LA + D+V+ M  V + +                               
Sbjct: 695 -RTATGVRGITLAHEKDEVVGMISVNNPEVT----------------------------- 724

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  +L VSEKG+GKRT   D+R++NR GKG++  +V+  +
Sbjct: 725 -----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--D 759

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G LVA+  V D++ +++++  G +IR+ V ++R+  RAT+GV + +   ++ + S+ +
Sbjct: 760 KTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITK 819

Query: 897 IR 898
           + 
Sbjct: 820 VE 821


>gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4]
 gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4]
          Length = 842

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/916 (37%), Positives = 520/916 (56%), Gaps = 85/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG++AIYD L R+AQ W++R  +++GQGNFGS 
Sbjct: 61  WDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTEC++   A  ++ D+ K+TVDF+PNYDG   EPVVL +R PN+LVNG  
Sbjct: 121 GNDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT +P HNL EV +     +DNPD   +      ME I+GPDFPT   I+G  G
Sbjct: 181 GIAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIVGDQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY+TGRGSI +RG + IE   G+R  IV+TE+PY+VN   M+  IAE +R+ +I  I
Sbjct: 241 IKDAYSTGRGSIRMRGKTSIE-EEGNRTVIVITELPYEVNPDNMILSIAEQLRDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLALN 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+VRRT+YLL++A  RAH+L GL  A+  LDEV+ +IR S   E AR 
Sbjct: 360 HLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIARE 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L          KDL+++ DD                Q +AIL+++L RL  L R  I +
Sbjct: 420 GL----------KDLLEIDDD----------------QAQAILDMQLRRLAALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L ++ +EI +  DIL+   R   I+  EL  + ++    RRTRI+    D+ DED I R
Sbjct: 454 QLAAIELEIADYKDILAKPERQRAIVGDELREIVEKYGDDRRTRIIPADGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTRTDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 574 GRVYRIKAYELPEANRTARGQHVANLLAFQPEERIAGVIRI---KSYQDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L D+      G IA+ L   DE++       ++D+LL ++ GQ +RF  +   +
Sbjct: 631 LVKKSRLEDYDSPRSGGLIAVNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+    GD ++SM++V    +D ++                        
Sbjct: 691 RPMGRATSGVMGMRFNDGDALLSMSVVRADTSDQEK------------------------ 726

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +E+G+ KRT+  ++    R GKG+       
Sbjct: 727 -----------------------YFLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFDP 763

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G LV    V   D++  ++  G +IR    ++R A R TKGV + + A+ + ++++
Sbjct: 764 --KRGKLVGATIVELQDELYAITSSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLAI 821

Query: 895 ERIRESEIVDEAESTE 910
            R  +    ++    E
Sbjct: 822 ARNADEPDDEDKAEAE 837



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST----HTSVL 590
            +  ++  +  GY KR  LS Y AQ RGGKG   ++    D      + +T       + 
Sbjct: 725 EKYFLLVATERGYSKRTALSEYTAQGRGGKGVLTLMF---DPKRGKLVGATIVELQDELY 781

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V +    ++     Q +G   + +++L +G+ +  I    ++    +      
Sbjct: 782 AITSSGGVIRTFAKQVRKAGRQTKG---VRLMNLAEGDSLLAIARNADEPDDEDKAEAES 838

Query: 651 ATK 653
            T+
Sbjct: 839 ITE 841


>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 869

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/905 (40%), Positives = 535/905 (59%), Gaps = 47/905 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ      L  D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG VA+I N +I    LM+ + GPDFPTGA ILG + IK AY TGRGS+ +R
Sbjct: 185 PHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSVTMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        +RE I++TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G
Sbjct: 245 GVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQS F  NM+AL   +P+  TL   L  F+ FR  
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGEPQLLTLKNFLSVFLDFRIA 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT Y L KA +R H+L GL IA+++LD ++  IR + +  +A+ EL+         
Sbjct: 365 TINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELITN------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L  D IR E   L ++I + 
Sbjct: 418 -------------------YGLSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL  R R+L II+ E+  +K +  TPRRT I     D++D D I  E +++ ++  GY
Sbjct: 459 QDILDRRERVLEIIETEVTQIKTQFATPRRTIITHAEGDIDDIDLIANEKVLILLTKQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G++G  ++D+D +        H SVLFFS  G VY  + +++P
Sbjct: 519 IKRMPVNTFEAQSRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           IGS  +RG  ++ +L + + E+IT+I+P  E  S     Y+V  TK GN+++  L  F  
Sbjct: 579 IGSRTSRGTPIVQMLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTALEAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V     E+ I++ ++ G  + F  +  ++   GR + GV+ 
Sbjct: 636 IRANGLIAISLEEGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  GD+++ M I+  A  +  +     +       +      E  S   ++       
Sbjct: 696 MKLKPGDELVGMDILPAAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNS---- 751

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +  
Sbjct: 752 -------NSTGPWVLVITMGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDKLATLRI 804

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           VN +++I++ +++G +IR  VN I + SR+  GV +    +D+ +  V  +  ++    E
Sbjct: 805 VNSDEEIMMATNRGIIIRQTVNAISVQSRSATGVRVQRLDEDDAITGVAIVPPDTGDTGE 864

Query: 906 AESTE 910
            E  E
Sbjct: 865 LEEVE 869


>gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3]
 gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3]
          Length = 828

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/897 (41%), Positives = 535/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K +
Sbjct: 2   QRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG+ A+YD+L R+ QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATN+ 
Sbjct: 122 EVRMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLA 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A+I+ P+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PHNLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR+G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V  +AL    P+   L  +++ +V  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVINLALVDGVPKILNLKEMMQYYVKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R          
Sbjct: 362 RRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AILE+RL RLTG+ R  I  E   +   I+E   I
Sbjct: 412 ----------------FGLSEIQAKAILEMRLQRLTGMERQKIDTEYIEVLALIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  + + II++ELL VKD     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LNSPEKQMEIIREELLKVKDVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   +++DF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I T +     E      ++V AT HG V++  L +F    R
Sbjct: 576 RAARGRSLANIMELPPGEKIRTYINIRNFEE---PGFIVMATTHGIVKKTALEEFSHPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D  DE+L       ++ I+L    G  VRFP + +R    R ++GV+GI+L 
Sbjct: 633 TGIAAITIDEGDELLDARLTDGDHQIILAKNSGFVVRFPENEVRPMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + ++ I+M      D                                             
Sbjct: 692 EDEKCIAMVTTRRMD--------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+         +IGALV +  VND 
Sbjct: 707 -------TALLAVTDNGFGKRSRVEDYRLTRRGARGVITLK--PHEKIGALVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +IL++  G + R  V++IRI  R T GV +    + + + ++ R+ +S+   + +
Sbjct: 758 DDLILITVNGIVNRQHVSDIRITGRNTSGVRLIRLMQGDSISALARVPKSDEEGDGD 814


>gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 553/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834


>gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
 gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
          Length = 859

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/897 (41%), Positives = 553/897 (61%), Gaps = 84/897 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E  E  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEETDNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ GEV+GKYHPHG++++YD + RMAQ WSLR +LI+GQGNFGS+
Sbjct: 61  QGLGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL+K A  +L D+ KDTVDFR N+D S +EP VL AR PN+LVNG  
Sbjct: 121 DGDGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNI  HNL EV+D  +A ID+ +I +  LM+ ++ PDFPTG +I G  G++ A
Sbjct: 181 GIAVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIYGYEGVREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE  S +RE+I+VTEIPYQVNKA M+E+ AELV EK+I  I+++R
Sbjct: 241 FETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V E+KR A+A ++LN LY+YT+LQ+ FSVN +AL   +P    L  ++  
Sbjct: 301 DESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGRPMLLNLKDMIVH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVVVRRTK+ L +A  RAH+L GL IA+ +LDEV+ +IR S  P+ AR  LM +
Sbjct: 361 FVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I+ E   L
Sbjct: 421 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYADL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+    +L+  S  + IIK+EL+ VK+     RRT IV    ++  ED I  E++V+
Sbjct: 455 MKQIEYLKSVLADESLRMSIIKEELVEVKEAYGDERRTEIVHSAAELMTEDFIEDENVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR PL+ YR Q RGGKG  G   RDEDF+  +F+ S H  +LFF+  G  Y 
Sbjct: 515 TISHEGYIKRTPLTEYRTQGRGGKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P GS  ++G+A+ NI+++++ E+I   +      D+    N +++  TK G ++
Sbjct: 575 LRVFEIPEGSRTSKGRAIQNIINIDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  DE+L     T  ++I++  + G+ +RF  S +R    
Sbjct: 635 KTTLEAYSRPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPMG- 693

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGISLA   D+V+ M  +   ++                               
Sbjct: 694 RTATGVRGISLAHDKDEVVGMISIDSPEST------------------------------ 723

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKRT   D+R++NR GKG++  +++  ++
Sbjct: 724 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINIT--DK 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G LVA+  V DND +++++  G +IR+ ++ +R+  RAT+GV + +  + + + SV
Sbjct: 760 TGQLVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESDEIASV 816


>gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 848

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/902 (41%), Positives = 552/902 (61%), Gaps = 85/902 (9%)

Query: 1   MTEHIISSDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M E   + +     G I  ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+G
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M+ +GV   K Y K ARI G+V+GKYHPHG++++YDA+ R+AQDWS+R  L++GQGN+GS
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL+K A  +L D+ KDTVDF+ N+D S +EP VL  R PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTEARLKKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVVDG +A IDN +I++  LM+ I+GPDFPTG +I G  G+K 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTIAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A  TGRG +V+R  + IE T   RE I+VTEIPYQVNKA M+++ AELV EK+I  I+++
Sbjct: 241 ACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G+RVV ++KR A+A+V+LN LY+YT+LQ+ FSVN +AL   +P    L  ++ 
Sbjct: 301 RDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIH 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV+RRTK+ L +A  RAH+L G  IA+ +LDEV+++IR S  PE AR  LM+
Sbjct: 361 EFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++Q RAIL++ L RLTGL RD I+ E N 
Sbjct: 421 R--------------------------FALSDLQARAILDMTLRRLTGLERDKIKEEYNE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I+   ++LS     + IIK ELL +KD+    RR+ IV    DM  ED I  E++V
Sbjct: 455 LMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH  YVKR PLS Y+ Q RGG+G  G   R+EDF   +   S H  +LFF+  G  +
Sbjct: 515 ITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCF 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657
             + + +P GS  +RG+AL NI+++ + E+I   +      D+    N +++  TK G +
Sbjct: 575 WLRAFEIPEGSRTSRGRALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  + +   +G  A+ ++  D+++        ++I++  + G+ +RF  S +R   
Sbjct: 635 KKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPMG 694

Query: 718 GRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            R + GVRGI+LA + D+V+ M  V + +                               
Sbjct: 695 -RTATGVRGITLAHEKDEVVGMISVNNPEVT----------------------------- 724

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  +L VSEKG+GKRT   D+R++NR GKG++  +V+  +
Sbjct: 725 -----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--D 759

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G LVA+  V D++ +++++  G +IR+ V ++R+  RAT+GV + +   ++ + S+ +
Sbjct: 760 KTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITK 819

Query: 897 IR 898
           + 
Sbjct: 820 VE 821


>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
          Length = 903

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/891 (42%), Positives = 559/891 (62%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  LI+GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G +++  NPDI +  LME ++GPDFPT  +ILG++GI+ A+ TGRGSI 
Sbjct: 183 IPPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIILGKSGIRRAFETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTE+PYQVNKA M+EKIAEL R+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A V+LN LY+ T LQ+ F VNM+AL   +P+  +L   L+ ++  ++ V
Sbjct: 303 RVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKEALEEYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA DRAH+L GL IA+ ++DE++R+IR S   + A   L ++        
Sbjct: 363 VRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQ-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E   L   I+E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYIELIAYIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+   +LL I++ EL+ +++     RR+ I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEKLLQIVRNELIDIRERYGDERRSEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+  E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVVNAIELDNDESISTMIAVKDLESEDD--YLVFATRKGRVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+   + DE+++V     E DIL+ T     +RF  + +R    R + GV+GI
Sbjct: 635 INKNGKIAISFKNDDELIAVRLTDGEQDILIGTSHASLIRFNETTLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+VI + +                                               
Sbjct: 694 TLREDDKVIGLDVTNAE------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 711 --------SDEEILVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERN--GNIVCITSV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +    +++ V +V ++ 
Sbjct: 761 TGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKVN 811



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 110/275 (40%), Gaps = 13/275 (4%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +D    +D +V  +  G VKR  LS +        G+  +  +++D +  + +    
Sbjct: 603 IAVKDLESEDDYLVFATRKGRVKRSALSNF--SHINKNGKIAISFKNDDELIAVRLTDGE 660

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  +S   + +     L      A G   +  ++L + +++  +    +  ++ ++ 
Sbjct: 661 QDILIGTSHASLIRFNETTLRPLGRTAAG---VKGITLREDDKVIGL----DVTNAESDE 713

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLG 703
            ++  T++G  +R  + D+   NR GK    A   +    I+ + + T E D+++ T  G
Sbjct: 714 EILVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERNGNIVCITSVTGEEDLMVVTNSG 773

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  +  I     R + GVR I L +   V ++A V   D   ++        S    
Sbjct: 774 VIIRIDVEDISQNG-RAAQGVRLIKLGENQFVSTVAKVNEEDEITEDDESTEAIASDVDN 832

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +  T+   S  +++ VE     +        E+
Sbjct: 833 ANASQTDLQGSQNSEAVVEDGAPGDAIHTEVEDEE 867


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/894 (40%), Positives = 561/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   + +      Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +RV   R++ GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVMG-RSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGM-------------------------------------------------- 700

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E     +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 701 ---EKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D+D+I++ S +G  IR+ V+++ +  R T+GV +        +V S+ RI+  E
Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809


>gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CMR15]
          Length = 885

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/867 (41%), Positives = 539/867 (62%), Gaps = 28/867 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLHNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM R+W++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +   G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  +T 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMSTS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +G QVI+M +     A   E+      ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGSVLTATENGYGKRTPISE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   E  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGKVVAAALVAAEDEIMLITTGGVLIRTRVDEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQ 852
           G+    V + N++  L  V   +   +
Sbjct: 838 GVTLIAVGEGNKLSGLQRVVESDAEGE 864


>gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 554/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834


>gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b F2365]
 gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459]
 gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816]
 gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220]
          Length = 842

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/891 (41%), Positives = 542/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +                                           
Sbjct: 693 LREDDEVIGMEVLEDDEK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 711 -----------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 808



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 593 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 650

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 651 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 707

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 708 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 761

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 762 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 820

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 821 ETLITQVPDESFEDAPGSDIEE 842


>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 826

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/893 (44%), Positives = 556/893 (62%), Gaps = 87/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+GM ++G   +K Y K
Sbjct: 19  ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG+AAIYD + RMAQD+SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 79  SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL++ A  +L DL K+TVDF PN+D + +EPVVL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +AVIDNP+I+   L+  ++GPDFPT   I G+ GIK AY TGRGSI +R  
Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAK 258

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I      +  I+VTEIPY VNKA ++E IA+LV++K+I  I+DLRDESDR G R+VIE
Sbjct: 259 AEI-VDENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIE 317

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+A+VILNQL+++T ++S F VN +AL    P   +L   +  F+  R+EVV RR+
Sbjct: 318 LKKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRRS 377

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ R H+L GL IA+ N+D+ VRIIR S N + A+  LM++             
Sbjct: 378 QFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEK------------- 424

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q+RAIL++RLARLT L R  I +E   L  EI    ++L+S
Sbjct: 425 -------------YGLSDEQSRAILDMRLARLTALERQKIDDERADLIKEIAHLNEVLAS 471

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              +L IIK ELL +K +    RRT+IVE   ++ DED I  E++VVT+S+ GY+KR+P+
Sbjct: 472 PQMVLDIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISNTGYIKRMPV 531

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612
             YR QRRGG G  G+  ++EDFV DLF+ STH ++LFFS+ G VY  KV+ +P   S Q
Sbjct: 532 DTYRTQRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQ 591

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA+IN++++  GE I  ++P    ++  +  ++V  T+ G +++  LS F  I  +G
Sbjct: 592 ARGKAIINLINIEPGEAINAMIPI---KTFDDQHFLVMCTREGTIKKTALSAFQNIRSTG 648

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+S DE++SV+      ++L+ T+ G+C RF  S +R    R ++GV GI L + 
Sbjct: 649 IIAIGLESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTMG-RPAMGVIGIRLTEN 707

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI+M                                                     E
Sbjct: 708 DKVIAM-----------------------------------------------------E 714

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +LT+ E GFGKRT   ++   +R G+G+     +  N  GA+VAV  V  +DQ
Sbjct: 715 IVSPGQSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRN--GAVVAVISVMPDDQ 772

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I++ S +G + R+ V +I    R T+GV +     ++ VV+V R+   +  DE
Sbjct: 773 IVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKEDE 825


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/894 (41%), Positives = 561/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   + +      Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R    R + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMG-RTAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGM-------------------------------------------------- 700

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E     +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 701 ---EKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ V++I +  R T+GV +     D  +V S+ RIR +E
Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVNE 809


>gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK405]
          Length = 826

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 553/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G   V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823


>gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 807

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/889 (40%), Positives = 543/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++  +
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVV 807



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  T  G   R   S  R    R   GV+G+ +   D V ++      D         +
Sbjct: 507 VITLTNNGYIKRMANSEFRA-QRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGK 565

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +   K         +     + +L    S E   +    +      +++   + KG  KR
Sbjct: 566 VYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKR 625

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T+   F  SN    G+ A  + + +E   LV V   N N ++I+ +  G  +    N +R
Sbjct: 626 TAVTAF--SNIRSNGLIAISLKEDDE---LVNVVTTNGNQKMIIGTHAGYSVTFDENTVR 680

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R   GV      +++ VV    + E++ V
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEV 712


>gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247]
 gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247]
          Length = 827

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/913 (38%), Positives = 508/913 (55%), Gaps = 92/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +     E   +  V +  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+  
Sbjct: 1   MTDTTLPPAGGEGDRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   E MG YHPHG+ AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  YDAGFRPDRSYVKSAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  +L D+ ++TVDF PNYDG   EP VL AR PN+L+NG G
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D  +  +++PD D +    A ME I+GPDFPT A+I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE  +     +VVTE+PYQVN   +++ IAE V E ++  I
Sbjct: 241 IRDAYTTGRGSIRMRSVVDIE-ENKGTTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ L+R A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SRIEDQSSDRVGMRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S N E AR 
Sbjct: 360 QMIRYYVAHQIDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL+ L R  I +
Sbjct: 420 GLMD--------------------------LLEIDEIQADAILAMQLRRLSALERQKIVD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I++ EL  V D+    RRT+I+    D+ DED I R
Sbjct: 454 ELAEIEREIADLQDILAKPERQRAIVRDELKVVVDKYGDDRRTKIIAADGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQRRGGKGVQGAGLKQDDIVKHFFVSSTHDWILFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     +S  +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIQL---KSYQDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL DF      G  A+ L   DE++  + C+ ++D+LL ++ GQ +RF      +
Sbjct: 631 LVKKSKLEDFDSNRSGGIAAINLRGEDELVGAQLCSADDDLLLVSQKGQSIRFHADDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D ++S+ +V                                 
Sbjct: 691 RPMGRQTSGVQGMRFNADDTLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   D+ +  R GKG+      +
Sbjct: 721 -----------------------TYLLVATSGGYAKRTGMDDYPVQGRGGKGVLTIAHDR 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G L+    V+D+ ++  ++  G +IR    ++R A R TKGV + +  +   V+++
Sbjct: 758 R--RGELIGALIVDDDSELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNIDEGTTVIAI 815

Query: 895 ERIRESEIVDEAE 907
            R    E  D  E
Sbjct: 816 ARNA-DEPDDAGE 827


>gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
 gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
          Length = 820

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/893 (40%), Positives = 548/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL +++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLREILGSYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV++IIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT + V  +L +EDED I   ++++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSLEDEDLIEETNVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+   +D S   + Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDDGESIQTIINVAQDRS--EDAYLFFTTRSGLVKRTSVAEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  S +R    R++ GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESVVRNMG-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  +++                                                 
Sbjct: 693 PGDQVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKGI+  +V+  ++ G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTRADEYPTKGRGGKGIKTANVA--DKNGPLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + ++++++ G +IR  V  I    R+T GV +    +D ++V+   ++  E  
Sbjct: 758 EDLMIITNTGVMIRTSVANISQTGRSTMGVKVMRLDQDAQIVTFTTVQADEKD 810


>gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
 gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
          Length = 842

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/891 (41%), Positives = 541/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  NP+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +                                           
Sbjct: 693 LREDDEVIGMEVLEDDEK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 711 -----------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + ++L++  G LIR  +  +    R+  GV +    +DE+V +V ++ +
Sbjct: 758 GEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 808



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 593 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 650

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 651 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 707

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 708 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 761

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 762 LMLMTVSGVLIRFEI-ETVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 820

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 821 ETLITQVPDESFEDAPGSDIEE 842


>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
 gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
          Length = 870

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/890 (41%), Positives = 543/890 (61%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E ++  ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R    R + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMG-RTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I+                                              
Sbjct: 693 RLRDHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807


>gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 817

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 552/900 (61%), Gaps = 88/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +  +KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+L II++EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S   + Y+ F T+ G V+R  ++DF  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVEQDHS--QDSYLFFTTRLGVVKRTSVADFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +V                                                 
Sbjct: 693 DGDQVVGAGVVSD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN  
Sbjct: 706 ------NDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +    + E+ DE E
Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 817


>gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 824

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 552/900 (61%), Gaps = 88/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 9   QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+ G  P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQGGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +  +KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL  D I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLEHDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+L II++EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S   + Y+ F T+ G V+R  ++DF  I +
Sbjct: 583 RTAKGLPIVNLLKLDEGETIQTIINVEQDHS--QDSYLFFTTRLGVVKRTSVADFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +V                                                 
Sbjct: 700 DGDQVVGAGVVSD----------------------------------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN  
Sbjct: 713 ------NDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +    + E+ DE E
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 824


>gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
 gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
          Length = 878

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/842 (44%), Positives = 533/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+D+++ +IR +  P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L   ERIT I+P  E     ++ ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEDNERITAILPVTE---FSDDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF    +R    R + GVR
Sbjct: 663 SNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L +GDQV+S+ +      +L    +   +   +    A+ R   G      S +N  
Sbjct: 722 GMKLMEGDQVVSLIVPKTDGDILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNGR 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V    ++E            + ++  G   RT   +     R+ +G+     S+  ++ 
Sbjct: 782 VVGAVQADE--------GDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVV 833

Query: 840 AL 841
            L
Sbjct: 834 GL 835



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 161/437 (36%), Gaps = 33/437 (7%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E ++ +R       ARR  
Sbjct: 462 LHKLTGLEHEKILDEYKQLLEEIAELMHILASTERLMEVIREELQAVR--DGYGDARRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAASHDIDLEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEDNERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   V +RD+D +  + I +  +
Sbjct: 634 LPVTEFSDDKFIFMATGDGTVKKTSLDQFSNVRS--NGLIAVNLRDDDSLIGVDITNGDS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G   +  + L +G+++ +++    D        
Sbjct: 692 EIMLFSKSGKVVRFNEDQVRAMGRTASG---VRGMKLMEGDQVVSLIVPKTDGD------ 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  L+++   +R+  G +++K+      ++      + ++ ++ T  G 
Sbjct: 743 ILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +     RN+ GV  I  ++ +QV+ +  +   +            M+     
Sbjct: 803 LVRTRVAEVSQVG-RNTQGVTLIRTSEDEQVVGLQRIEEIEESELLEGEEGSEMTENVDA 861

Query: 765 ISGDTEEITSLKNDSSV 781
                      + DS  
Sbjct: 862 AEAPAAPEAPTEGDSEA 878


>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
 gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
          Length = 853

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/904 (41%), Positives = 542/904 (59%), Gaps = 60/904 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             + I    ++ EM  SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+  ++ +
Sbjct: 4   HPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LIEG GNFGS+D DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RLQ    + LL D+  +TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ESRLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+I NP+I    LM+ I GPDFPTGA ILGR+GIK+AY  GRGSI +
Sbjct: 184 PPHNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQILGRSGIKDAYTNGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        +RE I+VTE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR 
Sbjct: 244 RGVAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T +Q+ F  NM+AL   +P+  TL   L+ F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPQVLTLKDFLEVFLDFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT Y L KA +R HVL GL +A+ANLD ++++IR + +  TA+REL+ +      
Sbjct: 364 EVITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ  AIL+++L RLT L  + I+ E   L  +I +
Sbjct: 418 --------------------FGLSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL  R R+  II++EL  +K    TPRRT I++   ++ D D I  E  V+ ++  G
Sbjct: 458 LRDILERRERVDHIIEEELNQLKTTHATPRRTEIIQEDGELIDLDLIANEQAVILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S +  Q R  +G+S   ++++D V        H  +LFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFGQQSRATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+++   E      + Y++  T+ G +++  LS + 
Sbjct: 578 PSSSRTARGVPIVQMLPIPKNEKITSMLAVSE---FSEDCYLIMLTRQGYIKKTVLSAYS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNSVGVR 725
            I  +G IA+ L   D++  V    +E+ I++ T+ G  + F   + ++    R + GV+
Sbjct: 635 NIRANGLIAITLSEGDQLRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D++IS+ I+                        S     I + +++   E   
Sbjct: 695 SMKLKGTDEIISVDILP-----------------------SQVVANIATSEDEVEDETLE 731

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +EE   E      ++L ++  G+GKR     FR+  R+G G++A      N+   LVA+ 
Sbjct: 732 TEEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFK--NDHDQLVAIH 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN +D++++V+++G +IR  V+ I   SR   GV +    +D+ + +V  +  S   ++
Sbjct: 790 VVNQDDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPPSAEGED 849

Query: 906 AEST 909
            ES 
Sbjct: 850 PESE 853


>gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 870

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/897 (39%), Positives = 509/897 (56%), Gaps = 88/897 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +  + +       I  V I  EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M 
Sbjct: 13  GDSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAMY 72

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KCAR+ G+VMG YHPHG++AIYD L R+AQ WS+R+ L++  GNFGS  
Sbjct: 73  DGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSAG 132

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTEC+L   A  +L D+ KDTVDFRPNYDG   EPVVL AR+PN+LVNG  G
Sbjct: 133 NDPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSSG 192

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HNL EV DG    +DNP+   + L++     ++GPDFPT  +I+G+ GI
Sbjct: 193 IAVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKRGI 252

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   +  KIA+LV++ +I  IA
Sbjct: 253 EEAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITGIA 312

Query: 298 DLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDES  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    L  
Sbjct: 313 DVRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQ 372

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++ +V  + EV+VRRT+YLL KA +RAH+L  L  A+  +DEV+ +IR S + + AR  
Sbjct: 373 MIRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQARTG 432

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                            + + ++Q RAIL+++L +L  L R+ +  E
Sbjct: 433 LMD--------------------------LLEIDDIQARAILDMQLRKLAALERNALTAE 466

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
            + L  +I +  DIL S +R   II++EL  + ++    RRT I+    DM  ED I  E
Sbjct: 467 YDELMAQIADYNDILESDTRQRSIIREELGEIVEKYGDERRTHIIPFEGDMRMEDFIAEE 526

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D+VVT+S  GY KR  +  YRAQ+RGGKG  G  ++ +D V   F+ +TH  +L F++ G
Sbjct: 527 DVVVTISRGGYAKRTRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQG 586

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP  +  ARG+ + N+L    GE I  IM   + E++    Y+V AT+ G 
Sbjct: 587 RVYRTKAYELPEAARDARGQHVANLLPFQPGEEIAQIMALRDYEAA---PYLVLATREGL 643

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++++L DF     +G IA+ L   DE+++      ++D+LL +   Q +RFP S   + 
Sbjct: 644 VKKSRLEDFDSARAAGIIAINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLR 703

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV G+   + D ++SM ++   D   D                          
Sbjct: 704 PMGRATSGVIGMRFLEDDYLLSMDVIRPGDGSTD-------------------------- 737

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L  +E G+ KRT S  + + NR GKG+    V + 
Sbjct: 738 ------------------------VLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKVVEA 773

Query: 836 NEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              G LV    ++   D++  ++  G +IR   +E++ + R T GV + + AK  ++
Sbjct: 774 --RGKLVGALMIDPEVDEVFAITSAGGVIRTGADEVKRSGRTTMGVRLMNLAKGNKI 828


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/850 (44%), Positives = 540/850 (63%), Gaps = 17/850 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D ++ +IR +  P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E+Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL++++++ +  RRT I     D+  ED I +E++VVT+SH
Sbjct: 486 AELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L   D+V+S+ +     D     +  + K  +     +     +       S   G
Sbjct: 722 RGINLQDDDRVVSLIVPRGEGDILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNG 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +              I+ +++ G   RT   +  I  R+ +G+     ++  ++  L  
Sbjct: 782 KV---VGAVQVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEQVVGLQR 838

Query: 844 VFPVNDNDQI 853
           V    ++D++
Sbjct: 839 VAEPVEDDEL 848



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 102/269 (37%), Gaps = 22/269 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+                 V   +  G VK+  L+ +   R    G   V + D
Sbjct: 628 DERITAILP-------VREYEEGMNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLND 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +  + +      V+ FS+ G V +     +      A G   +  ++L   +R+ ++
Sbjct: 679 GDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATG---VRGINLQDDDRVVSL 735

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETC 690
           +  P  E       ++  T++G  +R  ++++   +R+  G I++K+     +++     
Sbjct: 736 I-VPRGEGD-----ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQV 789

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + I++ T  G  VR  +S + +   RN+ GV  I  A+ +QV+ +  V     D + 
Sbjct: 790 DSADQIMMITDAGTLVRTRVSEVSIVG-RNTQGVTLIRTAEDEQVVGLQRVAEPVEDDEL 848

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDS 779
                         I     +  +  +D 
Sbjct: 849 DSVVPVDGELPEEDIDEPENDDDTPADDE 877


>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
 gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
          Length = 929

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/898 (41%), Positives = 529/898 (58%), Gaps = 97/898 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
               EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   G
Sbjct: 76  EFGKEMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVG 135

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG++A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A
Sbjct: 136 EVIGKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPA 195

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL DL KDTVD++PNYD S  EP  L AR+PN+LVNG  GIAVGMATNI  HN+ E +
Sbjct: 196 MELLRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAI 255

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +    +ID+PD  +D LM+I+ GPDFPTGA+I+G  GI+ +Y TGRGSI +R  +H+E T
Sbjct: 256 EATCYLIDHPDATVDELMQIMPGPDFPTGALIMGTEGIRQSYETGRGSITVRAKAHVEST 315

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              R ++V TEIPY VNK  + EKIA LV EKRI  I+D+RDES ++G R+VIELK+G  
Sbjct: 316 KTGRSRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVI 375

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN LY+YTSLQ+ F  N +AL    P+  +L  +L+ ++  + +VV RRT++ L K
Sbjct: 376 PQVVLNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKK 435

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A+ RAH+L G  IA+ ++DEV+ IIR S     A   L++R                   
Sbjct: 436 AQARAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIER------------------- 476

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                     S  QT AILE++L RLTGL RD I  EL+ L   I    D+L+   ++LG
Sbjct: 477 -------FGFSPEQTTAILEMKLRRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILG 529

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +IK+E+  +  +    RRT+I     D++ ED I  EDMVVT++H GYVKR+P++ YRAQ
Sbjct: 530 VIKEEMREIARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQ 589

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG SGV ++++D + ++FI STH  VLFFSS G VY+ KV  LP G+ QARG A++
Sbjct: 590 KRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIV 649

Query: 620 NILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           N+L    GE+I +++    FPEDE      Y++FAT  G V++  ++ + +  R G IA+
Sbjct: 650 NLLPFEDGEKIASVISCRAFPEDE------YLMFATASGMVKKTAMAAYDRSRRDGLIAI 703

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            + + D +L V      + I++ T  G+ + F    +R   GR++ GVRGI++  G    
Sbjct: 704 NIKAGDRLLGVRRVKPGDKIIMATTAGKAIMFCEDQVRA-TGRDTSGVRGITMKGG---- 758

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                                                            +E    E+   
Sbjct: 759 -------------------------------------------------TEVLGMEITNG 769

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +  V+E G+GKRT   ++   NR G+G+    +++    GAL A+  V    ++ ++
Sbjct: 770 SGELFVVTEHGYGKRTPVAEYPEQNRGGQGVYTIQMTER--KGALAAMKVVGPQHELFII 827

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI------RESEIVDEAES 908
           ++  T+IRV   EI    RAT+GV + S  + +RV +V R+       E  + DE E 
Sbjct: 828 TENATVIRVKTAEISQTGRATQGVKMMSVDEGDRVCAVARMTAGKDKPEDSVEDEGEE 885


>gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 809

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/894 (41%), Positives = 561/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R+++VVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   + +      Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SGK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R    R++ GV+G++
Sbjct: 632 GKSGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMG-RSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGM-------------------------------------------------- 700

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E     +++L V+E GFGKR+   ++R + R  KG+    V++  + G +V +  VN
Sbjct: 701 ---EKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ V++I +  R T+GV +     D  +V S+ RIR  E
Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVDE 809


>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 832

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 548/891 (61%), Gaps = 88/891 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y 
Sbjct: 24  QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 83

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 84  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 144 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  +D LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 204 HNMVEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 263

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  + DLRDESDR G R+VI
Sbjct: 264 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVI 323

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L+ ++  +E V+ RR
Sbjct: 324 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQETVITRR 383

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM              
Sbjct: 384 TRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMD------------- 430

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 431 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILA 477

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R ++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 478 DRMKVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIP 537

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P    Q
Sbjct: 538 LDTYRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQ 597

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E  +   + Y+   TKHG V++  LS+F  I ++G
Sbjct: 598 AKGTAIVNLLAVENDERITAVIQVKEFRA---DRYLFLGTKHGVVKKTPLSEFGNIRKNG 654

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R    R + GVRGI+LA G
Sbjct: 655 LRAVNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEDGVRSMG-RVARGVRGITLADG 713

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M ++                                                   
Sbjct: 714 DEVVAMDVLR-------------------------------------------------- 723

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V +N +
Sbjct: 724 ---SDSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQE 778

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE---RIRES 900
           ++L++ +G +IR  V+EI + SR T+GV + + A+ +RV S+    RI +S
Sbjct: 779 LMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMNRIVDS 829



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 84/220 (38%), Gaps = 13/220 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
              +E+ ++  T      R P+   R                K   ++S  ++     D 
Sbjct: 517 LIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVG--VRGMGTKETDIVSDLLITTTHHDI 574

Query: 748 ----YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R   +K               I +L    + E   +  + +E +  ++++   
Sbjct: 575 LFFTNRGRAFVLKSYEIPESGRQAKGTAIVNLLAVENDERITAVIQVKEFRA-DRYLFLG 633

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+T   +F    ++G  +RA ++ + +E   L+ V   +  ++I+L +  G  I
Sbjct: 634 TKHGVVKKTPLSEFGNIRKNG--LRAVNLDEDDE---LIGVKFTDGENRIMLGTRGGKAI 688

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             P + +R   R  +GV   + A  + VV+++ +R    V
Sbjct: 689 TFPEDGVRSMGRVARGVRGITLADGDEVVAMDVLRSDSEV 728


>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
 gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
          Length = 842

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/891 (41%), Positives = 542/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +                                           
Sbjct: 693 LREDDEVIGMEVLEDDEK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 711 -----------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 808



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 593 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 650

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 651 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 707

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 708 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 761

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 762 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 820

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 821 ETLITQVPDESFEDAPGSDIEE 842


>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988]
 gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
 gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
 gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161]
 gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
 gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
 gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
 gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
          Length = 842

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/891 (41%), Positives = 542/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +                                           
Sbjct: 693 LREDDEVIGMEVLEDDEK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 711 -----------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 808



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 593 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 650

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 651 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 707

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 708 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 761

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 762 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 820

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 821 ETLITQVPDESFEDAPGSDIEE 842


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/837 (45%), Positives = 535/837 (63%), Gaps = 16/837 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A+I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V++     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+ L + DQV+S+ +  +  D     +  Y K          G   +       S   G 
Sbjct: 722 GMKLPEDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGP 781

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +      E   +   ++ +++ G   RT   +     R+ +G+     S    +  L
Sbjct: 782 VVGAVQVE---EGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTSDDENVVGL 835


>gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 843

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/892 (39%), Positives = 532/892 (59%), Gaps = 85/892 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+    IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   
Sbjct: 2   PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TGRG+I
Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G 
Sbjct: 242 ILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 302 RVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM          
Sbjct: 362 VRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNN-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS  Q +AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------YSLSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++++    RRT + V  +L +EDED I  ED++VT++H GY
Sbjct: 456 DILAHTERIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S ++ Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 IKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDF 665
             S  A+G  +IN+L ++ GE I  ++       +    + Y+ F T  G  +R  +++F
Sbjct: 576 EYSRTAKGIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEF 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + I  +G  A+ L   DE+++V       +I++ T  G  + F    +R    R++ GVR
Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMG-RSATGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L + D V+  A++                                            
Sbjct: 695 GIRLRENDYVVGSAVLAP------------------------------------------ 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ++ ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  + 
Sbjct: 713 -----------ESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GPLAGLV 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V  N+ ++L++D+G +IR  V+ +    R+T GV +  T ++ +V ++  +
Sbjct: 760 TVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 15/242 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               +   +  G  KR P++ +   R    G   + ++D D V ++ I   H +++  + 
Sbjct: 614 EHRYLFFTTLQGVAKRTPVAEFMNIRS--NGLKAINLKDGDEVINVVITDGHQNIIIGTH 671

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+    K   +      A G   +  + L + + +        +        V+  T+ 
Sbjct: 672 NGYAISFKEGEVRSMGRSATG---VRGIRLRENDYVVGSAVLAPESK------VMVITEK 722

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  ++    ++    R GK    A   +    +  + T     D++L T  G  +RF + 
Sbjct: 723 GYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGNEDVMLITDRGVMIRFNVD 782

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR+++GV  I   +  +V +MAIV     D  E        + +    S +T+ 
Sbjct: 783 NVST-TGRSTLGVHVIKTDENSKVATMAIVEEEKDDESEDSADTSTATHEAPSASTETQS 841

Query: 772 IT 773
             
Sbjct: 842 EE 843


>gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60]
          Length = 878

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/854 (44%), Positives = 543/854 (63%), Gaps = 28/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYTQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++ 
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLA 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA  D+V+S+ +      +L    +   +   +     + R   G    I   + +
Sbjct: 722 RGIKLAGEDRVVSLIVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVIS-IKVTERN 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            SV G +  E C +       I+ +++ G   RT   +  I  R+ +G+     ++   +
Sbjct: 781 GSVVGAVQVEDCDQ-------IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHV 833

Query: 839 GALVAVF-PVNDND 851
             L  V  PV+D D
Sbjct: 834 VGLQRVVEPVDDED 847



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 22/256 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R    G   V + 
Sbjct: 627 ADERITAILP-------VREYAEGVNVFMATASGTVKKTALTEFSRPR--AAGIIAVNLN 677

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +  + +   +  V+ FS+ G V + K   +      A G   +  + L   +R+ +
Sbjct: 678 YGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGEDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++             ++  T++G  +R+ ++++   +R+  G I++K+      ++    
Sbjct: 735 LIV------PHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +  V+    D D
Sbjct: 789 VEDCDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDEHVVGLQRVVEPVDDED 847

Query: 750 ERICYMKHMSAQRRLI 765
                         ++
Sbjct: 848 LDSIDGSAAEGDDEIV 863


>gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1]
 gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4]
          Length = 874

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 547/906 (60%), Gaps = 91/906 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+GKDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +IDN      D D++ L+ I++GPDFPTG +ILG  GI  AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGTAGINEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R ++ IE     + +IVVTE+PY VNKA ++EKIAELVR+K++  I DLRDES
Sbjct: 242 GRGKVRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DRQG R+ IEL+R  + +V+LN LY++T LQ  F V M+AL   +P+   L  +LK ++ 
Sbjct: 302 DRQGMRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALVNNEPKVLNLYDMLKYYLI 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N + A+  LM+R   
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ +  E   L   
Sbjct: 419 -----------------------FSLSDAQSQAIVDMRLRALTGLEREKLEAEYAELMDR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ + +LLG+I+ E+L + D+    RRT I     D+  ED I   + V+T++
Sbjct: 456 IAELRAILADKKKLLGVIRTEILLIADKYGDDRRTSIGFDEYDISMEDLIPVTNTVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ L  +RAQ RGGKG  G+   D+D++ +L + ++H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSLDNFRAQNRGGKGIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A++N+L L  GE+IT ++P  E        ++  ATK G V++  ++
Sbjct: 576 YEIPEASRTARGTAIVNLLQLQPGEKITAVIPIREY---TEGHFLFMATKKGIVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+      D+ L TK GQC+RF  + +R   GR S+G
Sbjct: 633 DYANVRKTGLAAISLREDDELIEVKKTDNNQDVFLVTKYGQCIRFKETDVR-KTGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G++L  GD+VI M +    DA                                     
Sbjct: 692 VIGMNLTDGDEVIGMQMQSQGDA------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++ VSEKG GK T   +F   NR GKG++   +++  + G +V 
Sbjct: 715 ----------------LMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITE--KTGNIVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EI 902
           V  VN +++++L++ +G +IR+ V++  +  R T GV + +  ++  V S+ ++RE   +
Sbjct: 757 VKAVNQDNELMLITTEGIIIRIKVSDTTLLGRITSGVKLINLDENVTVASIAKVREDKSL 816

Query: 903 VDEAES 908
           +D A++
Sbjct: 817 IDNADT 822


>gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
 gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
          Length = 843

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/892 (39%), Positives = 532/892 (59%), Gaps = 85/892 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+    IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   
Sbjct: 2   PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TGRG+I
Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G 
Sbjct: 242 ILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 302 RVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM          
Sbjct: 362 VRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNN-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS  Q +AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------YSLSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++++    RRT + V  +L +EDED I  ED++VT++H GY
Sbjct: 456 DILAHTERIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S ++ Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 IKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDF 665
             S  A+G  +IN+L ++ GE I  ++       +    + Y+ F T  G  +R  +++F
Sbjct: 576 EYSRTAKGIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEF 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + I  +G  A+ L   DE+++V       +I++ T  G  + F    +R    R++ GVR
Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMG-RSATGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L + D V+  A++                                            
Sbjct: 695 GIRLRENDYVVGSAVLAP------------------------------------------ 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ++ ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  + 
Sbjct: 713 -----------ESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GPLAGLV 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V  N+ ++L++D+G +IR  V+ +    R+T GV +  T ++ +V ++  +
Sbjct: 760 TVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 91/242 (37%), Gaps = 15/242 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               +   +  G  KR P++ +   R    G   + ++D D V ++ I   H +++  + 
Sbjct: 614 EHRYLFFTTLQGVAKRTPVAEFMNIRS--NGLKAINLKDGDEVINVVITDGHQNIIIGTH 671

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+    K   +      A G   +  + L + + +        +        V+  T+ 
Sbjct: 672 NGYAISFKEGEVRSMGRSATG---VRGIRLRENDYVVGSAVLAPESK------VMVITEK 722

Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  ++    ++    R GK    A   +    +  + T     D++L T  G  +RF + 
Sbjct: 723 GYGKQTPAEEYPIKGRGGKGIKTANITEKNGPLAGLVTVEGNEDVMLITDRGVMIRFNVD 782

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR+++GV  I   +  +V +MAIV     D  E        + +   +S +T+ 
Sbjct: 783 NVST-TGRSTLGVHVIKTDENSKVATMAIVEEEKDDESEDSADTSTATNEAPSVSTETQS 841

Query: 772 IT 773
             
Sbjct: 842 EE 843


>gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1]
          Length = 881

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/900 (41%), Positives = 532/900 (59%), Gaps = 74/900 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WNK 
Sbjct: 3   ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H LL DL K+TVDF PNYD S   P VL AR P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A+ID P+I++D LME I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGAFINGRAGIVEAYKTGRGRIYM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E    G+R+ IV TEIPYQ+NKA ++EKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARHHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG + DV++N ++  T LQS+F +NMVAL   +PE   L  IL+ FV  R EVV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPELLNLKQILECFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+A+AN+D V+ +IR SP+   AR +L+  SW   D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMA 422

Query: 430 LIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++            D  +    +G   LS  Q +AIL+LRL RLTGL  + + +E   L
Sbjct: 423 MLERAGADACRPDDLDPQFGFN-NGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+IL + +RL+ +I +EL +V+D+    R T I+    D+   D I    MVV
Sbjct: 482 IAVIAELLEILGNPTRLMEVICEELEAVRDQFGDERLTEILTSRQDLTIADLIDEAPMVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY K  PL  Y+AQRRGG+G+S   M+DED ++ L + S+H +V+ FS+ G VY 
Sbjct: 542 TISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +V+ +P+ S  A+G+ ++N+L L +GE I+ ++P  ++                     
Sbjct: 602 LRVFEIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDE--------------------- 640

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                                          +++ I + T  G   +  +     FA   
Sbjct: 641 ------------------------------MEDSYIFMATANGTVKKTAVE---YFARPR 667

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G+  +SL + D+++ +A         +  I  +       R    D   +        
Sbjct: 668 STGLIALSLDENDELVGVA-----QTSGENDIMLVSSSGKTIRFKESDVRAMGRTAAGVR 722

Query: 781 VEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 E +   L    +   +L   E GFGKRT + DF +  R G+G+    VS+ N  
Sbjct: 723 GIRLADEYKVVSLIVPQEGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERN-- 780

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V    V D D+I+L+SD+GTL+R   +E+    R T+GV +     DE +V VER+ 
Sbjct: 781 GPVVGATQVEDTDEIMLISDQGTLVRTRASEVSCQGRNTQGVTLIRLMNDEHLVGVERVV 840



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 99/264 (37%), Gaps = 15/264 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +  + +  +   +  G VK+  +  Y A+ R   G   + + + D +  + 
Sbjct: 629 EHISALLPLNDEMEDSYIFMATANGTVKKTAV-EYFARPRST-GLIALSLDENDELVGVA 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             S    ++  SS G   + K   +      A G  +  I   ++ + ++ I+P      
Sbjct: 687 QTSGENDIMLVSSSGKTIRFKESDVRAMGRTAAG--VRGIRLADEYKVVSLIVP------ 738

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILL 698
                 V+FA ++G  +R    DF    R G   I +++      ++        ++I+L
Sbjct: 739 -QEGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERNGPVVGATQVEDTDEIML 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR   S +    GRN+ GV  I L   + ++ +  V+  D D  E     +  
Sbjct: 798 ISDQGTLVRTRASEVSC-QGRNTQGVTLIRLMNDEHLVGVERVVDEDDDAGEDAESEERG 856

Query: 759 SAQRRLISGDTEEITSLKNDSSVE 782
             Q         E T    DS  E
Sbjct: 857 EEQATTPDAPEAEKTDEAPDSEGE 880


>gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
 gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
          Length = 931

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/906 (38%), Positives = 525/906 (57%), Gaps = 83/906 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G   ++ Y K
Sbjct: 69  HRVDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNK 128

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMG+YHPHG++AIYDAL R+ Q WS+R  L++GQGNFGS   D  AA RYTEC
Sbjct: 129 CSRVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTEC 188

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  L+ D+ ++TVDF PNYDG   +P VL +R+PN+LVNG  GIAVGMAT IP H
Sbjct: 189 RMAPLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPH 248

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV D    ++ NP+   +AL+E     I GPDFPTGA+I+G+ G+++AY TGRGSI 
Sbjct: 249 NLREVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKRGVEDAYRTGRGSIT 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V ++E+    R+ +VVTE+PYQVN  A+ EKIA LV++ ++  IAD+RDE+  R G 
Sbjct: 309 MRAVVNVEEIQ-GRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTGQ 367

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    +   ++ +V  + +V
Sbjct: 368 RLVIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPISAFIRYWVEHQIDV 427

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L++A  R H+L GL  A+  LDEV+ +IR SP  + AR  L++         
Sbjct: 428 IVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGLIE--------- 478

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + E+Q  AILE++L RL  L R  I  + + L  +I +  
Sbjct: 479 -----------------LLDIDEIQANAILEMQLRRLAALERQRIIEQHDELQSKIDDYK 521

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  + ++    RR++IV    DM  ED I  ED+VVT++  GYV
Sbjct: 522 DILAKPERQRQIVSDELAEIVEKYGDDRRSQIVPFDGDMNMEDLIPEEDVVVTITRGGYV 581

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +S YR+QRRGGKG  G  +R +D V   F  STH  +LFF++ G VY+ K + LP 
Sbjct: 582 KRTKVSEYRSQRRGGKGVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPE 641

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L+   GE+I  +M      +  ++ Y++ AT++G V++ +LS++   
Sbjct: 642 GSRDSKGQHVANLLAFQPGEQIAQVMALR---TYADSEYLLLATRNGLVKKTRLSEYDSP 698

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
              G IA+ L   DE++     T ++D+LL ++ GQ VRF  +   +   GR++ GV G+
Sbjct: 699 RSGGLIAVNLRDGDELVGAGLATHDDDVLLVSRKGQAVRFAATDDSLRPMGRSTSGVTGM 758

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD+++SM +V                                  K  + VE    E
Sbjct: 759 KFREGDELLSMNVVP---------------------------------KGANEVERGADE 785

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           + C         +  V E G  KRT   ++    R+  G++   +S+    G LV    V
Sbjct: 786 KLC---------VFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERG--GDLVGALVV 834

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVD 904
            + D++++V +KG ++R  V E+R   R T+GV   +  K + +V+V R  E    EI D
Sbjct: 835 ENRDEVMVVMEKGKIVRSAVAEVRETGRNTQGVQFATPGKGDSIVAVARNAEKDSEEIDD 894

Query: 905 EAESTE 910
           +A  +E
Sbjct: 895 DAVVSE 900



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 112/279 (40%), Gaps = 16/279 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         + ++  +  G VK+  LS Y + R G  G   V +RD D +    
Sbjct: 661 EQIAQVMALRTYADSEYLLLATRNGLVKKTRLSEYDSPRSG--GLIAVNLRDGDELVGAG 718

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--- 638
           + +    VL  S  G   +       +  P  R  + +  +   +G+ + ++   P+   
Sbjct: 719 LATHDDDVLLVSRKGQAVRFAATDDSL-RPMGRSTSGVTGMKFREGDELLSMNVVPKGAN 777

Query: 639 --DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
             +  +   L V    ++G  +R  + ++    R+    K+A   +   +++        
Sbjct: 778 EVERGADEKLCVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERGGDLVGALVVENR 837

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +++++  + G+ VR  ++ +R   GRN+ GV+  +  KGD ++++A     D++  +   
Sbjct: 838 DEVMVVMEKGKIVRSAVAEVRE-TGRNTQGVQFATPGKGDSIVAVARNAEKDSEEIDDDA 896

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +   +         T++ T   +D S     +E    E
Sbjct: 897 VVSETNEAAES----TQDATHAPDDESASTENNESGDSE 931


>gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
 gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
          Length = 863

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/907 (40%), Positives = 550/907 (60%), Gaps = 89/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSV
Sbjct: 57  QGLGNTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DDL KDTVD   N+DG+ +EP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNPDID + LM  I+ PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIYGIQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G +VIR  + IE +    ++IVVTEIPY VNKA ++E IA+LV+E +I  I+++ 
Sbjct: 237 YETGKGRVVIRAKAEIE-SHESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   TL   +K 
Sbjct: 296 DESGRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLTLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRT++ L KA++RAH+L GL IA  N+DEVV +IR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  + +  E   L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLSQLTGLRMEQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL        ++K EL +VK++    RRT I     +   ED    + +V+
Sbjct: 450 EKLIAYLQSILDDPELCKKVMKDELQAVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KR  LS ++ Q RGG G  G   R+EDF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHLGYIKRTALSEFKEQARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G+  ++G+A+ N+L+++  + +   +     +DE+  N+ YVVFATK+G V+
Sbjct: 570 LKCYEIPEGTKDSKGRAIQNMLNIDSDDSVNAFLRLKGLDDEAFLNSHYVVFATKNGVVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ +   DE+++V      N+++L  + G+ VRF   A+R    
Sbjct: 630 KTLLKAYSRPRANGVNAINIVDGDEVVNVRLTNGSNELILANRNGRAVRFDEKAVRTMG- 688

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRG+ L  G D+V+ M +V  AD +                              
Sbjct: 689 RVSTGVRGMRLDGGDDEVVGMVVVNEADKES----------------------------- 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE G+GKR+S  D+R +NR GKG++   ++  ++
Sbjct: 720 ----------------------VMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LV++  V D + +++++  G  IR+ V+ +R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVSIKNVTDENDLMIINKSGITIRLAVSNVRVMGRATQGVRLINLTKKNDVIASVCK 815

Query: 897 IRESEIV 903
           +  SE+ 
Sbjct: 816 VMSSELE 822



 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 73/179 (40%), Gaps = 15/179 (8%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC------- 790
           M  +     + ++ I Y++ +     L     ++      +   +   +E +        
Sbjct: 439 MEQLHAEYEELEKLIAYLQSILDDPELCKKVMKDELQAVKEKYGDERRTEIKYSSEEFNP 498

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++    +  ++TVS  G+ KRT+  +F+   R G G R +   + +    +   +P   +
Sbjct: 499 EDFYPNDPVVITVSHLGYIKRTALSEFKEQARGGVGSRGSRTREEDFTEFI---YPATMH 555

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVDEA 906
           + ++  + KG    +   EI   ++ +KG  I    +   D+ V +  R++   + DEA
Sbjct: 556 NTMLFFTRKGRCYWLKCYEIPEGTKDSKGRAIQNMLNIDSDDSVNAFLRLK--GLDDEA 612


>gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 829

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/897 (40%), Positives = 546/897 (60%), Gaps = 86/897 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++G
Sbjct: 1   MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD 
Sbjct: 61  VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG
Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G+I++R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD
Sbjct: 241 KGNIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  
Sbjct: 301 QTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q     
Sbjct: 361 QEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L + Q++AIL++RL RLTGL RD I  E   L  +I
Sbjct: 417 ----------------------FGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            +  DIL+   R+  II  ELL ++      RRT+I E   + +EDED I ++D+++T++
Sbjct: 455 ADYKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+    ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K 
Sbjct: 515 HNGYIKRMSADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S
Sbjct: 575 YEIPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I RSG IA+ L   DE+ +V T   + +I++ T LG  V F    +R    R + G
Sbjct: 632 EFQNIRRSGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSMG-RTAAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L   D V+                                               
Sbjct: 691 VRGINLRDNDYVVG---------------------------------------------- 704

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   ++   +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  
Sbjct: 705 -------SDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V  VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++
Sbjct: 756 VTVVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKA 812


>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 870

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E ++  ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R    R + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMG-RTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I+                                              
Sbjct: 693 RLRDHDYVVGSDILKP-------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 709 ---------DSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807


>gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
 gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
          Length = 822

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 556/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + +  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
 gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
          Length = 822

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 556/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + +  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGVVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK678]
          Length = 826

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEIKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
 gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
          Length = 889

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/860 (41%), Positives = 533/860 (61%), Gaps = 28/860 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQ---HFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +  QVI+M +          +      ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLEETQQVIAMLVAPAETEGEGAQSVAGSVLTATENGYGKRTPISE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   E  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVF 845
           G+    V + N++  L  V 
Sbjct: 838 GVTLISVGEGNKLSGLQRVM 857


>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
          Length = 837

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/902 (42%), Positives = 553/902 (61%), Gaps = 87/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  ++ +  V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL  M ++G+  +K
Sbjct: 2   DLNKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++ D+ K+TVDF PNYD    EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNL E +D   A++DNPDI +  LM+  I+GPDFPTG +ILGR GI+ A+ TGRGSI
Sbjct: 182 IPPHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R   H+E     + +IVVTE+PYQVNKA ++ KIA+LVREK+I  I  L DES+R+G 
Sbjct: 242 LVRSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL++ A  DVILNQLYR T LQ+ F VNM+AL    P++  +   L+ +V  + +V
Sbjct: 302 RIVIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVDKTPKQMGIREALQHYVDHQIDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            VRRTK+ L KA DRAH+L GL IA+ ++DE++ +IR S N   AR  LM++        
Sbjct: 362 TVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AILE+RL RLTGL RD I NE   L   I +  
Sbjct: 414 ------------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMATIADLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++  R+L II+ EL  VK+     RRT I E   DM+DED I  ED+V+T++  GY+
Sbjct: 456 DILANHDRVLSIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P 
Sbjct: 516 KRMPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPN 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+L++ E++  ++P   D  S    +++F TK+G V+R  +S+F  I
Sbjct: 576 SGRTAKGLPVVNLLNLDKEEKVRALVPVRPDSESS---FLLFVTKNGLVKRTPMSEFDSI 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GKIA+ L   DE++ V+  T +++I++    G+ VRF    IR    R + GV+G +
Sbjct: 633 RQNGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAMG-RTASGVKGFN 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +  G  V+  A                                                 
Sbjct: 692 V-DGSIVVGAA------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +   +L VSE G+GKRT+  ++R++ R  KG++  +V+  N+ G LV+V  VN
Sbjct: 702 ----TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++  ++V+D G +IR+ V +I I SR T+GV + + + DE V  V  + + E V+EA  
Sbjct: 756 GDEDAMIVTDSGIIIRISVGDIGIYSRNTQGVKLINVSGDESVAKVAIVEKEEDVEEASD 815

Query: 909 TE 910
            E
Sbjct: 816 QE 817



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 96/257 (37%), Gaps = 16/257 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           ++ V+  G VKR P+S + + R+ GK    + +R+ D +  +
Sbjct: 594 EEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGK--IAITLREFDELVGV 651

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              +    ++   S G   +     +      A G    N+     G  +          
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDDIRAMGRTASGVKGFNV----DGSIVVGA------A 701

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDIL 697
           +S    +++  +++G  +R  + ++    R  K        +   E++SV     + D +
Sbjct: 702 TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVTNKTGELVSVRAVNGDEDAM 761

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  +R  +  I +++ RN+ GV+ I+++  + V  +AIV   +   +        
Sbjct: 762 IVTDSGIIIRISVGDIGIYS-RNTQGVKLINVSGDESVAKVAIVEKEEDVEEASDQEAVS 820

Query: 758 MSAQRRLISGDTEEITS 774
            ++      G       
Sbjct: 821 ENSNETAAEGIDNPAEE 837


>gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 835

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/907 (40%), Positives = 548/907 (60%), Gaps = 90/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRILF M ++G   +
Sbjct: 2   DEHIFDKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R  L++G GNFGS+DGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   + +IDN      D  +D LMEI++GPDFPTGA ILG++GI+ AY T
Sbjct: 182 NIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATILGKSGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R VS I      + +I++TE+PY VNKA +++KIAELV++K+I  I  + D+S
Sbjct: 242 GRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           + QG RV IEL+R  +A+VILNQLY++T LQ  F VNM+AL   +P+   L  +L  ++ 
Sbjct: 302 NMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLE 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA++RAH+L GL IA+ N+DEV+ IIR S +   A+++L++R   
Sbjct: 362 HQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ I  E N L   
Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRTLTGLEREKIEAEYNELMKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LL +I++EL  + D+    RRT I     D+  ED I  E  V+T++
Sbjct: 456 IDELKAILADNKKLLMVIREELSIIMDKYGDDRRTAIGYDEFDISMEDMIPNESTVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGY+KR+    +R+Q RGG+G  G+   D+D++ D+ + +TH  VLFF++ G VYK K 
Sbjct: 516 NLGYIKRMTPDNFRSQNRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N+L+L  GE+I+ I+P    +   +N Y+  ATK G V++    
Sbjct: 576 YEIPEAGRTARGTAIVNLLTLQAGEKISAIVPV---DGIKDNEYLFMATKQGIVKKTYCK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I ++G  A+ L   DE++ V+      +I L TK G C+RF  + +R   GR+++G
Sbjct: 633 EYANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRP-TGRSAMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+++ +GD+V+ M +    D                                      
Sbjct: 692 VIGMNILEGDEVVGMQLNTQGD-------------------------------------- 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L VSE G GKRT   +F + NR GKG++   +++  + G ++ 
Sbjct: 714 ---------------TLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINE--KSGNVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  V++  +I+L++ +G +IR+ V  I    R T GV + +     +V  V ++RE ++ 
Sbjct: 757 VKAVSNTREIMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKVAKVREEDVS 816

Query: 904 DEAESTE 910
           DE ES E
Sbjct: 817 DETESEE 823


>gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150]
 gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150]
          Length = 823

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 555/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V +T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G+TGI  AY TG+GSIV+R
Sbjct: 182 PHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKTGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPGRVIAIIKEELDESKRKFGDARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASENN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF  + IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L +SEKG+GKRTS+ ++    R GKGI+  +++  ++ G L  +  V+ N
Sbjct: 705 ----TDDQEVLIISEKGYGKRTSATEYPTKGRGGKGIKTANIT--DKNGHLAGIATVSGN 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+V   E+ +
Sbjct: 759 EDIMVMTDTGVIIRTAVANISQTGRATQGVKVMRLDNSARIVTFALVEPEEVVKAPEADQ 818


>gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 552/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D +++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834


>gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300]
 gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300]
          Length = 822

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 556/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + +  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
 gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 809

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/894 (41%), Positives = 562/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ +         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+IV+    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIVQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   + +      Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R    R + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSMG-RTAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGM-------------------------------------------------- 700

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E     +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G++V +  VN
Sbjct: 701 ---EKASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGSIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D+D+I++ S +G  IR+ V+++ +  R T+GV +     D  +V S+ RI+  E
Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809


>gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1]
          Length = 826

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
 gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
          Length = 887

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/863 (44%), Positives = 545/863 (63%), Gaps = 38/863 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YL+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMYILSSSERLMEVIREELELVKEQFNDERRTEITAASHDIDMEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E      + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREY---TEDKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
            +   +G IA+ L   D ++ V+    + DI+L +  G+ VRF  S +            
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVR 722

Query: 717 -AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDT 769
             GR + GVRGI LA+GD+VIS+ +      VL    +   +   +    A+ R   G  
Sbjct: 723 GMGRTAAGVRGIKLAEGDKVISLIVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQGVV 782

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
               S +N   V    +E+            + ++  G   RT   +     R+ +G+  
Sbjct: 783 SIKVSERNGRVVGAVQAED--------GDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTL 834

Query: 830 TDVSKINEIGALVAVFPVNDNDQ 852
              ++  +   +V +  +++ ++
Sbjct: 835 IRTTEGEK---VVGLQRIDEPEE 854


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
          Length = 858

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/907 (40%), Positives = 548/907 (60%), Gaps = 86/907 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ +E+    I S  + ++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MAEEEQTNSRIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K++ K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGDP 
Sbjct: 61  TPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+
Sbjct: 181 MATNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  + IE     +E I+VTE+PY VNKA ++E+IAEL R+KRI  I  + DESD+
Sbjct: 241 GVVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+ IE++R  SA V+LN LY+ T +Q+ FS NM+A+   +P+  +L  +L A++  +
Sbjct: 301 EGNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGRPKLLSLKDMLVAYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRT++ L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+++LM       
Sbjct: 361 QKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLMV------ 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q++AIL++RL RLTGL RD I  E   L   I 
Sbjct: 415 --------------------DYALSDKQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL V+ +    RRT + +  +  +EDED I  ED++V+++H
Sbjct: 455 DFQDILAKPERIDEIIYTELLEVQSKYGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+  S +RAQ RGG+G  G+ + D+DF+ +L   STH ++LFF++ G VYK K +
Sbjct: 515 AGYIKRMLQSEFRAQNRGGRGIQGMGVNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L +  GE I T++    D S  ++ Y+ F T+ G V+R  +++
Sbjct: 575 EVPEYGRTAKGIPVVNLLGIESGESIQTVINVRGDASESSD-YLFFTTRQGVVKRTPVNE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I   G  A+ L   DE+++V     + +I++ T  G  V F   A+R    R++ GV
Sbjct: 634 FGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIGTHGGYAVSFNSEAVRSMG-RSAAGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 693 RGITLRPDDYVVGAQVL------------------------------------------- 709

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     +    +L ++EKG+GK+T    + I  R GKGI+   V++ N  G L  +
Sbjct: 710 ----------IDNGHVLIITEKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKN--GPLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEI 902
             V+ ++ I+L ++KG +IR  V+ I    RAT+GV +     D  V +  ++    +E 
Sbjct: 758 KVVDGSEDIMLTTNKGVMIRFTVDSISETGRATQGVRVIRLDDDSAVATFAKVEHVVAEE 817

Query: 903 VDEAEST 909
           VD+ ++ 
Sbjct: 818 VDDEDTD 824


>gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 838

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/902 (40%), Positives = 538/902 (59%), Gaps = 88/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E ++ I  + I +EM++SYL+YA++VI+ RA+PD RDGLKP  RRIL  M  + +    
Sbjct: 2   TERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K+ KCA+I+G+  G YHPHG   +Y  L RMAQD++ R  LI+GQGNFGS+DGDPPAA R
Sbjct: 62  KFRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+      +++DL K TVD+ PNYD +  EPVVL +++PN+L NG  GIAVGMAT+
Sbjct: 122 YTEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN  E+ DG   VIDNP++ ++ LM +I GPDFPTGA I G +GIK  Y TGRG+I+
Sbjct: 182 IPPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGTSGIKEGYKTGRGTII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +H+E +   R+ IVVTEIPYQ+N+  +LE+IA LVRE+ +  I+D+R+ESDR G R
Sbjct: 242 VRAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LK+G   +V+LNQLY++T LQ  FS+ M+AL   +PE   L  +L  ++  R+ V+
Sbjct: 302 LVIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNRPETLNLKQMLICYIEHRKVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           V+RT++LL KA++RAHVL GL IA+ N+D V+ +I+ S   + ARR L+           
Sbjct: 362 VKRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLIS---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q  AIL++RL RLTGL +  I  E   L  +IKE   
Sbjct: 412 ----------------TFSLSEIQANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L IIK+++  +K++    RRT IV  + D+E ED I  E++ V +SH GY+K
Sbjct: 456 ILANEKLVLDIIKKDVAEIKEQFGDKRRTEIVGAVGDLEREDLITEENVTVIISHEGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR Q+RGGKG  G  M++ DF   LF+ STH  +LFF+  G VY  KV+ +P  
Sbjct: 516 RLPLSAYRKQQRGGKGVIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQM 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +G+ALIN+L L +GE +T+ +P        ++  +V AT HG +++  L  +    
Sbjct: 576 GKITKGRALINLLELKEGENVTSFIPVRNF----DDRQLVMATSHGIIKKTVLKAYGNPK 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD  D ++ V+    + D++L T+ G+ VRF    +R    R S GV+GI L
Sbjct: 632 KGGIIAINLDEGDTLIGVKLTNGKQDLILGTEQGKAVRFSEEDVRSVG-RVSRGVKGIKL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+V  M +V    +                                           
Sbjct: 691 KNGDKVCGMVVVDDESS------------------------------------------- 707

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ++T+ E GFGKRT+  ++   NR G+G+     ++ N  G +V +  V +
Sbjct: 708 ----------LMTICENGFGKRTNFEEYSAKNRGGQGVINIKTTERN--GKVVGLLDVRE 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE--IVDEAE 907
            D++I+++  G +IR PVN IRI  R T+GV +F   K ++++SV R+   E    D+ E
Sbjct: 756 TDELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKADKLISVARVIPEENPATDDLE 815

Query: 908 ST 909
           + 
Sbjct: 816 TE 817


>gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK115]
          Length = 826

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1058]
          Length = 826

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDVSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 836

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/916 (38%), Positives = 518/916 (56%), Gaps = 94/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     +    + I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTD----VNTPLVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG+++IY  + R+AQ W+LR  LI+GQGNFGS 
Sbjct: 57  YDGGYRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ KDTVDF+PNYDG  QEP+VL +R+PN+LVNG  
Sbjct: 117 GNDMPAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV DG    + NP+   + L+E     ++GPDFPTGA+I+GR G
Sbjct: 177 GIAVGMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIVGRRG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R +  +E+ +  R+ +VVTE+PYQVN   +   IAE V+E RI  I
Sbjct: 237 IDDAYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDES  R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P    L 
Sbjct: 297 ADVRDESSSRVGQRLVIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +VA + EVVVRRT+YLL KA +RAH+L  L  A+  +DEV+ +IR SP+   A+ 
Sbjct: 357 QFVRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q +AIL+++L +L  L R  I +
Sbjct: 417 GLMA--------------------------LLEIDEIQAQAILDMQLRKLAALERQQITD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E ++L   I +   IL+S  R   I+  EL  +  +    R+T I+    DM  ED +  
Sbjct: 451 EYDTLMAHITDYQAILASPERQRTIVFDELSEIVSKYGDERKTEIIAYEGDMSIEDLLAE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMVVT++  GY KR    +YRAQ+RGGKG  G  +R +D V   F+ +TH  +LFF++ 
Sbjct: 511 EDMVVTITRGGYAKRTNTDLYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ L N+L++   E +  ++   + E +    Y+V AT+ G
Sbjct: 571 GRVYRVKAYELPDSGRDARGQHLANLLAMQPDEVVMEVLDLRDYEVA---PYLVLATRSG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ +LS++      G IA+ L   DE+++    ++E+D+LL ++  Q +RF  S   +
Sbjct: 628 LVKKTRLSEYDSPRSGGLIAINLREDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEAL 687

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+    GD++++M                        R+  GD      
Sbjct: 688 RPMGRATSGVIGMRFLGGDELLAM-----------------------NRIGDGDD----- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +E G+ KRT +  + +  R GKG+    +  
Sbjct: 720 -------------------------VLIATEGGYAKRTPADQYPVQGRGGKGVLTAKI-- 752

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++  G LV    V   D++  ++  G +IR    EI+ + R T GV + + A+ + VV++
Sbjct: 753 VSARGKLVGAAMVRPEDEVFAITSAGGVIRTSAGEIKQSGRQTMGVRLMNLAEGDSVVAL 812

Query: 895 ERIRESEIVDEAESTE 910
            R  E+   +  ++ E
Sbjct: 813 ARNAEALETEHNDALE 828


>gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
 gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
          Length = 822

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 556/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + +  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK160]
          Length = 826

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 836

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/897 (41%), Positives = 548/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+++P+     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ TSLQ+ FS NM+A+    P+  TL  I+  +++ ++EV+ R
Sbjct: 302 IEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FQLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II QE+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPDRISAIIIQEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEVEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+     +   +N +  F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEEETIQTIINAR--KEDIDNKFFFFTTRQGLVKRTNASEFGNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ TK G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALNLKDGDELINVLLTDGSEDIIIGTKSGYSVRFEEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD VI  + +  +                                              
Sbjct: 693 DGDLVIGASRISDS---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V  +
Sbjct: 707 -------QEVLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKN--GQLAGLVTVTGH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I+++++KG +IR  + ++    R+T GV +    +D ++V+   +      D AE
Sbjct: 758 EDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVTFALVDPEAEKDFAE 814


>gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 857

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/905 (40%), Positives = 536/905 (59%), Gaps = 85/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++++  ++  I +V+++  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MANENGQDGRIENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K Y K ARI G+VMGKYHPHG++AIY+A+ RMAQ++S R +L++G GNFGSVDGD  
Sbjct: 61  TPEKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D+ PNYD S +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+     ++DNPD     LM+ + GPDFPTG +++G++GI++AY +G+
Sbjct: 181 MTTNIPPHNLAEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVMGKSGIRHAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I +R    +E     RE+I+VTEIPY VNKA ++E+IAEL R+KR+  I DL DESDR
Sbjct: 241 GTITLRAKVDVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VI+++R  SA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +
Sbjct: 301 DGMRIVIDVRRDMSASVILNNLYKLTPLQTSFSFNMVAIVNGAPKVLSLKSILEHYLVHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ RRT++ L KA  RAH+L GL IA+ ++D +++IIR S   +TA+  LM+R     
Sbjct: 361 EEVIRRRTEFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL RD + NE N+L   I 
Sbjct: 416 ---------------------YDLSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALIT 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++ +    RRT + V  +L +EDED I  ED+V+ ++H
Sbjct: 455 DLKDILAKPERIKKIIYDELLEIQSKFGDKRRTELLVGEVLSIEDEDLIEEEDVVIALTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S ++ Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPASEFKVQNRGGRGIQGMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L +N  ER+ T++     +       + F T+ G V+R  + +
Sbjct: 575 EIPEYGRTAKGIPIINLLGINSDERVQTVVNI--GKEVKPEQALFFITRLGTVKRTAVGE 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE+ +V     + +I + T  G  V F  +A+R    R + GV
Sbjct: 633 FANIRSNGLKALTLHEDDELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSMG-RTAAGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD V+                                                
Sbjct: 692 RGIRLREGDYVVG----------------------------------------------- 704

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  +L +  Q IL +SEKG+GKRT+  D+ I  R GKG++  ++++ N  G L  +
Sbjct: 705 ------SDLLIPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKN--GPLAGI 756

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   + I+L++D G LIR  V  +    RAT GV +     + +V ++  +       
Sbjct: 757 AAVTGEEDILLITDTGVLIRFKVANVSQTGRATLGVRLIRVDDEAKVATMATVEAEPDEP 816

Query: 905 EAEST 909
           E ++ 
Sbjct: 817 ETQTA 821


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/883 (41%), Positives = 526/883 (59%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+   K Y 
Sbjct: 5   EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF PNYD S +EP VL A++P +L NG  GIAVGMATNIP 
Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG + +ID PD  ++ LM +I+GPDFPT  +ILG  GI+ AY TGRG I +R 
Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             HIE TS  R +I+VTE+PYQVNKA ++EKIAELVR+K I  I  L DESDR G R+VI
Sbjct: 245 RVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +++R A+A+VILNQLY++T LQ  F V M+AL    P   TL  +L  ++  +++V+ RR
Sbjct: 305 DVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 365 TKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLME------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+LRL RLTGL R+ I  E   +   I     +L+
Sbjct: 412 -------------DFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++  IIK ELL+V+++    RRT I     ++  ED I +ED+V+T++H  Y+KR+P
Sbjct: 459 DEGKIDKIIKDELLAVREKYGDERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR Q+RGG G +G+  ++ DFV ++ + +TH ++LFF++ G VY  K + +   S Q
Sbjct: 519 LDTYRRQKRGGVGVTGMGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQ 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L L   E+IT ++   E        Y+  ATK G V++  LS+F  I R G
Sbjct: 579 AKGTAIINLLQLESEEKITAVIQVKE---FLPERYLFMATKKGIVKKTSLSEFQSIRRGG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  D+++ V+    E  ++L T  G  V F    +R    R + GV+GI+L  G
Sbjct: 636 LNAINLDEDDDLIGVKFTDGEKHVILGTAGGMAVAFAEDDVRSMG-RTARGVKGINLKAG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  +V+  D                                               
Sbjct: 695 ------DVVVGMDN---------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +   +LT++ +G+GKRT++ ++R+  R GKG+    V++  + GA++ +  V    +
Sbjct: 703 -LARNAEVLTITAEGYGKRTATSEYRLQTRGGKGLINMKVTE--KTGAVIGLKVVRPGQE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +IL++  G +IR  V+EI + SR T+GV +    + ++  S  
Sbjct: 760 LILITTDGIVIRTKVDEISVISRNTQGVKVVRLGEGDKAASFA 802



 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 15/228 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  +      + E  +   +  G VK+  LS +++ RRG  G + + + ++D + 
Sbjct: 591 ESEEKITAVIQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRG--GLNAINLDEDDDLI 648

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            +        V+  ++ G         +      ARG   +  ++L  G+ +  +     
Sbjct: 649 GVKFTDGEKHVILGTAGGMAVAFAEDDVRSMGRTARG---VKGINLKAGDVVVGMDNLAR 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQEND 695
           +        V+  T  G  +R   S++    R GK  + +   ++   ++ ++      +
Sbjct: 706 NAE------VLTITAEGYGKRTATSEYRLQTRGGKGLINMKVTEKTGAVIGLKVVRPGQE 759

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++L T  G  +R  +  I V + RN+ GV+ + L +GD+  S A +  
Sbjct: 760 LILITTDGIVIRTKVDEISVIS-RNTQGVKVVRLGEGDKAASFAAMEQ 806



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           SE   ++L  +E  ++T++   + KR     +R   R G G+      + + +  ++   
Sbjct: 491 SEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTGMGTKEADFVENILVTT 550

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRE 899
               +  I+  +++G +  +   EI  ASR  KG  I +      +E++ +V +++E
Sbjct: 551 T---HHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEEKITAVIQVKE 604


>gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
 gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
          Length = 833

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTSVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1057]
          Length = 826

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 554/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823


>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
 gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
          Length = 911

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 537/906 (59%), Gaps = 65/906 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 3   SPQERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RY
Sbjct: 63  FRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      L  D+  +TVDF  N+DGS QEPVVL AR P +L+NG  GIAVGMATN
Sbjct: 123 TESRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG VA+IDNP +    LME I GPDFPTGA I+G  GI+ AYATGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSRGIREAYATGRGSVT 242

Query: 250 IRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE    +   DRE I++TE+PYQ NKAA++EKIA++V E R+  I+DLRDESDR
Sbjct: 243 MRGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDR 302

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A   V+LN LY+ T LQ+ F VNM+ L   +P+  +L+  L+ F+ FR
Sbjct: 303 DGMRIVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSEPQLLSLLDFLQVFLDFR 362

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+Y L KA++R H+L G  IA+ NLD V+ +IR S +  +A+ EL++      
Sbjct: 363 IETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIE------ 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               +   S  Q  AIL+++L RLT L  + I+ E  +L  +I 
Sbjct: 417 --------------------SYGFSATQADAILQMQLRRLTALEAEKIQQEHEALTEKIA 456

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL++R R+L IIK+E++ +++     RRT I     D+ D   I  E + + V+  
Sbjct: 457 DLEDILANRDRILAIIKEEVIQIRNAYANERRTLIKADENDLSDISLIANEQVAILVTEQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+ +  + AQ R  +G+SG  M+D+D +       +H  VLFFS  G  Y  + ++
Sbjct: 517 GYIKRMLVDTFEAQNRATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQ 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  L+ +L + + E++T+++   E      + Y+V  T+ G +++  LS F
Sbjct: 577 IPESSRTAKGYPLVQMLPIPKEEKVTSVIGVSE---FSEDDYLVMLTQGGFIKKTALSAF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
            +I  +G IA+ L+  DE+  V   T ++ +L+ ++ G  + F     ++   GR + GV
Sbjct: 634 NRIRTNGLIAISLEDGDELRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPLGRPTKGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +SL +GDQ+ISM I+                        S   EE+    +DS  + +
Sbjct: 694 KSMSLREGDQLISMDILP-----------------------SQVVEEVEGAIDDSDEDAD 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                 Q       ++L VS  G GKR    +FR+ NR+G G+ A    K  +   LVA+
Sbjct: 731 ELANADQ-----GPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKFRKDGD--ELVAL 783

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
                +D++++VS +G ++R  V+ I + SR   GV +     D+ + +V  +   +  D
Sbjct: 784 RIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAVALVPHLDESD 843

Query: 905 EAESTE 910
               +E
Sbjct: 844 NEMPSE 849


>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
 gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
          Length = 828

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/902 (40%), Positives = 547/902 (60%), Gaps = 87/902 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E +   I  + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+  
Sbjct: 2   STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NK Y K AR+ G+ MGK+HPHG+++IYDA+ R+AQD+S R  LI+G GNFGSVDGD  AA
Sbjct: 62  NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K   ++L D+ KDTVDF+PNYD   QEP V+ A++PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++G +A IDNP+I++  LM  I+GPDFPTGA I+G  GI +AY TG+GS
Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASIMGTEGIISAYRTGKGS 241

Query: 248 IVIRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              R  +H+ E     + +I+VTEIPY VNKA ++EKIAELVREKRI  I DLRDESDR 
Sbjct: 242 FRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRT 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R  +  V+LNQLY++T ++  F VN++AL   +P+   L  I+  F+  ++
Sbjct: 302 GMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA   AH+L GL IA+  +DEV+ IIR S + ++A+  LM R      
Sbjct: 362 DVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q++AI+++RL RLTGL R+ I  +   +   I  
Sbjct: 416 --------------------FGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+S   +L IIKQEL  VK++    RRT I      M  ED I  E++V+T+SH G
Sbjct: 456 LKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+PL+ Y++QRRGGKG  G+  R+EDFV  +F  STH  +LFF++ G VY+ K   +
Sbjct: 516 YIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEI 575

Query: 607 PIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P      +G AL+N+LS+N   E+IT ++   +      + ++  AT+ G V++  L ++
Sbjct: 576 PEAGRTGKGTALVNLLSINPSEEKITAVLSIRKYNE---DFHLFMATRKGIVKKTLLKEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               + G IA+ L   DE++ V     +  I++ TK G C+RF  S +R    R + GV+
Sbjct: 633 DSPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQMG-RTAHGVK 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL K D V+SM ++   +A+                                      
Sbjct: 692 GISLEKEDLVVSMDVIYEEEAE-------------------------------------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         IL+++E GF KRTS  ++R+  R GKGI AT ++   + G LV + 
Sbjct: 714 --------------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNA--KTGKLVGLK 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +   + ++++++ G +IR  V+ I    R+ +GV+   T +  +VV++  +   E  +E
Sbjct: 758 VMRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRTGES-KVVAIAVVDNKEDAEE 816

Query: 906 AE 907
           ++
Sbjct: 817 SD 818


>gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 838

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis]
 gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76]
 gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137]
 gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000]
 gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017]
 gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027]
 gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141]
 gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244]
 gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031]
 gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043]
 gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312]
 gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342]
 gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346]
 gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B]
 gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A]
 gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62]
          Length = 833

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
 gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
          Length = 826

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 554/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+I+VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGTADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +  ++  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEANDKEDVAEEE 823


>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
 gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
          Length = 824

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/891 (43%), Positives = 548/891 (61%), Gaps = 88/891 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y 
Sbjct: 16  QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 75

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 136 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  +D LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 196 HNMVEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L+ ++  +E V+ RR
Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQEMVITRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM              
Sbjct: 376 TRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMD------------- 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 423 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILA 469

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R ++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 470 DRMKVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIP 529

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P    Q
Sbjct: 530 LDTYRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQ 589

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L++   ERIT ++   E  +   + Y+   TKHG V++  LS+F  I R+G
Sbjct: 590 AKGTAIINLLAVENDERITAVIQVKEFRA---DRYLFLGTKHGVVKKTPLSEFGSIRRNG 646

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R    R + GVRGI+LA G
Sbjct: 647 LKAVNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEEGVRSMG-RVARGVRGITLADG 705

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M ++                                                   
Sbjct: 706 DEVVAMDVLR-------------------------------------------------- 715

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V +N +
Sbjct: 716 ---SDSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQE 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE---RIRES 900
           ++L++ +G +IR  V+EI + SR T+GV + + A+ +RV S+    RI +S
Sbjct: 771 LMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMNRIVDS 821



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 13/220 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
              +E+ ++  T      R P+   R                K   ++S  ++     D 
Sbjct: 509 LIAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVG--VRGMGTKETDIVSDLLITTTHHDI 566

Query: 748 ----YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R   +K               I +L    + E   +  + +E +  ++++   
Sbjct: 567 LFFTNRGRAFVLKSYEIPESGRQAKGTAIINLLAVENDERITAVIQVKEFRA-DRYLFLG 625

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+T   +F    R+G  ++A ++ + +E   L+ V   +  ++I+L +  G  I
Sbjct: 626 TKHGVVKKTPLSEFGSIRRNG--LKAVNLDEDDE---LIGVKFTDGENRIMLGTRGGKAI 680

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             P   +R   R  +GV   + A  + VV+++ +R    V
Sbjct: 681 TFPEEGVRSMGRVARGVRGITLADGDEVVAMDVLRSDSEV 720


>gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630]
 gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 833

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            N+ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK330]
          Length = 826

 Score =  766 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 839

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/907 (39%), Positives = 538/907 (59%), Gaps = 88/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M+N Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   DEHIFDKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  DL KDTVDF PN+D + +EP VL +RYPN+L NG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      D  ++ +++I++GPDFPTG  I+G+ GI+ AY T
Sbjct: 182 NIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTIIGKLGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR  I +R V++IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DLRDES
Sbjct: 242 GRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+ IEL+R  + +++LNQLY++T LQ  F V M+AL   +P+   L  +LK ++ 
Sbjct: 302 DREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVDNQPKVLNLYDMLKYYLL 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTK+ LNKA +RAH+L GL IA+ N+D V+ IIR S N + A+  L+     
Sbjct: 362 HQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAE--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AI+++RL  LTGL R  +  EL  L  +
Sbjct: 419 -----------------------FALSEAQAQAIVDMRLRALTGLERSKLEAELKELHEK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IKE   IL+ +  LLG+IK E+  + D+    RRT I     D+  ED I  E  V+  +
Sbjct: 456 IKEYKAILADKKLLLGVIKNEISEIADKYGDDRRTSIGYDEYDISMEDLIPDEPCVIART 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGYVKR+    +++Q RGGKG  G+   D+D++ DLF+ ++H  + FF++ G  YK K 
Sbjct: 516 NLGYVKRMTPDNFKSQHRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG A+IN+L L  GE IT ++P   D +  +  Y+  ATK G V++  + 
Sbjct: 576 YEIPEASRTSRGTAIINLLQLAPGETITAVVPVKID-TLQDTDYLFMATKKGIVKKTPVK 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  I ++G  A+ L   DE++ V+    + +IL+ T LGQC+RF  + +R   GR+++G
Sbjct: 635 EFANIRKTGIQAINLREDDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRP-TGRSAMG 693

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+SL   D+V+ + +    D                                      
Sbjct: 694 VIGMSLMDEDEVVGVQVSTQGD-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L VSE G GKRT   ++ + +R GKG++   +++  + G +V 
Sbjct: 716 ---------------TMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITE--KTGNVVG 758

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+D+ +++L++ +G +IR+  ++I    R T GV + +  +  +V ++ ++R+    
Sbjct: 759 AKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIAKVRKQPAD 818

Query: 904 DEAESTE 910
           ++ +  E
Sbjct: 819 EDGKDAE 825



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 97/237 (40%), Gaps = 15/237 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             D +   +  G VK+ P+  +   R+   G   + +R++D + ++ +      +L  + 
Sbjct: 615 DTDYLFMATKKGIVKKTPVKEFANIRKT--GIQAINLREDDELIEVKLTDDQAEILMVTM 672

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG   + K   +      A G  +I +  +++ E +   +    D        ++  +++
Sbjct: 673 LGQCIRFKETDVRPTGRSAMG--VIGMSLMDEDEVVGVQVSTQGD-------TMLIVSEN 723

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + ++   +R GK        ++   ++  +      +++L T  G  +R   S
Sbjct: 724 GMGKRTDIDEYTVQHRGGKGVKCYKITEKTGNVVGAKAVDDSREVMLITTEGIIIRLQCS 783

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            I     R + GV+ I+L +G +V ++A V    AD D +          + + S D
Sbjct: 784 DISNLG-RITSGVKLINLDEGIKVATIAKVRKQPADEDGKDAEGFEEDTDKTVESED 839


>gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK408]
          Length = 826

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 553/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 812

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/902 (42%), Positives = 554/902 (61%), Gaps = 90/902 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++       EE  +  V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSDNT----NNEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K   + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R  L++G GNFGS+
Sbjct: 57  NGLGLTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG  
Sbjct: 117 DGDPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQ 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DG +A IDNP I  D LM  I+GPDFPTG +I+G+ GI+  
Sbjct: 177 GIAVGMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIVGKDGIRET 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE     R +IVVTE+PY V K+ ++EKIAELVR+K I  I+DLR
Sbjct: 237 YETGRGKIIVRAKAEIE-EHNGRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR  +  V+LN+LY +T +Q  F   M+AL    P+  +L  I++ 
Sbjct: 296 DESDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEK 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + +V+ RRTK+ L KA +RAH+L GL IA+ ++DEV+ +IR S     A+  LM +
Sbjct: 356 YVDHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AI+++RL RLTGL R  I +ELN L
Sbjct: 416 --------------------------FGLSDRQAQAIVDMRLGRLTGLERQKIEDELNDL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE   ILS   ++L IIK+EL  VKD+  + RRT IV    +++ ED +  ED VV
Sbjct: 450 YQKIKELKSILSDEKKVLDIIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+PL  Y+AQ+RGGKG SG+  R++DFV ++F  +TH  +LFF++ G VY 
Sbjct: 510 TMTHFGYIKRMPLDAYKAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYS 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P    QA+G A+IN++ ++Q E++  ++P    + S N  YVV  TK+G +++ 
Sbjct: 570 LRTIDIPESGRQAKGTAIINLIQIDQDEKVNAVIPI---KKSHNAKYVVMCTKNGIIKKT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++ DF +I +SG  A+KLD  DE+++V       +I++ T  G C+RF    +R    R 
Sbjct: 627 EIDDFPKIKKSGNTAIKLDDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPMG-RQ 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV  ++L   D V+ M +V                                       
Sbjct: 686 ARGVIAVTLRDDDYVVEMDLVD-------------------------------------- 707

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +++ IL V+E G+GKR+ + ++R   R+GKGI A  ++K  + G 
Sbjct: 708 ---------------RDKDILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITK--KTGK 750

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV++  V++ D+++++S  G LIR  + +I    R T GV++    + +RVVS  RI   
Sbjct: 751 LVSIMSVSEKDELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIAND 810

Query: 901 EI 902
           E 
Sbjct: 811 EE 812



 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 93/250 (37%), Gaps = 9/250 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + + +L D      SG+    +   DE+   +    E+ ++  T  G   R P+ A +  
Sbjct: 469 IIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKA- 527

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEIT 773
             R   G+ GIS  + D V ++      D      ++   Y                   
Sbjct: 528 QKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAI 587

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                   +  ++     +     ++++  ++ G  K+T   DF    +SG    A  + 
Sbjct: 588 INLIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGN--TAIKLD 645

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E   L+ V   + N +II+ +  G  IR   + +R   R  +GV+  +   D+ VV 
Sbjct: 646 DGDE---LINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDYVVE 702

Query: 894 VERIRESEIV 903
           ++ +   + +
Sbjct: 703 MDLVDRDKDI 712


>gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4]
 gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688]
 gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4]
 gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688]
          Length = 848

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/859 (43%), Positives = 531/859 (61%), Gaps = 28/859 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D L++II  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTLGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E    G+R+ +++ E+PYQVNK  ++EKIAELV +K+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHVEDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P  A++ LM R+W +  ++
Sbjct: 362 ITRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 422 EMLKRAAMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  +I  EL +++ +    RR+ IV    D+  ED I  +D+VV
Sbjct: 482 MDVIADLLDILAKPERVTQMIVDELAAIRQQFGDERRSEIVHNAQDLSLEDLITPQDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 542 TLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L  GE+I  I+P  E +    N ++  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRISRGKPIVNLFPLEDGEKINAILPVKEFDE---NHFIFMATAQGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F    R+G IA+ LD  D ++  E     NDI+L +  G+ V F    +R    RN
Sbjct: 659 ALVEFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMG-RN 717

Query: 721 SVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           + GVRG+ L    +VIS+ I       VL A  +   +   +       R   G     T
Sbjct: 718 TRGVRGMKLMAKQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIAT 777

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +N S V           L   E  I+ ++  G   RT   + R   R+ +G+   ++ 
Sbjct: 778 SERNGSVV--------AARLVSDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLG 829

Query: 834 KINEIGALVAVFPVNDNDQ 852
           +  ++  L  V   +D D+
Sbjct: 830 ENEKLSGLEKVVETDDADE 848


>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
          Length = 835

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/897 (39%), Positives = 541/897 (60%), Gaps = 84/897 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K
Sbjct: 3   NRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 63  SARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTH
Sbjct: 123 RMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R  
Sbjct: 183 NLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +++I+V EIPY VNKA ++ +IA+L R K I  I D+ DE+DR G R+VI+
Sbjct: 243 VDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVID 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E+VV RRT
Sbjct: 303 VRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ R H++ GL IA+ ++DE++ IIR S   E A+ ELM               
Sbjct: 363 EFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM--------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                      G   LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  DIL+ 
Sbjct: 408 -----------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILAH 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + R+  II  EL+ ++ +    RRT + V  + ++EDED I  +D++VT++H GY+KR+P
Sbjct: 457 KERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLP 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  +++Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY  K + +P     
Sbjct: 517 VDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRS 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  +IN+L+++  E+I+ ++     E++ ++ ++ F TK+G V+R  + +F  I  +G
Sbjct: 577 AQGIPIINLLNIDSQEKISAVINVSH-ETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE++ V+    +  +++ T+ G  + F  + +R    R + GVRGI L   
Sbjct: 636 LKAINLHDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVVRSMG-RGAAGVRGIRLRDH 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI  A +   D                                               
Sbjct: 695 DFVIGAAPLHQDDN---------------------------------------------- 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L +SE GFGK+T + ++ I  R G G++  +V+K N  G LV +  V  ++ 
Sbjct: 709 -------VLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDED 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           I+LV+D+G +IR  +  +    R+  GV +       +V ++ ++ + +  D+A + 
Sbjct: 760 IMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDGDDAPAA 816


>gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
 gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
          Length = 816

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
 gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
          Length = 848

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/890 (40%), Positives = 548/890 (61%), Gaps = 85/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+  +  +
Sbjct: 3   EGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD + N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A IDN D+ +D LME ++ PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE I+VTEIPYQVNKA M++K A+++ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKAEFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +KR A  +++LN+L++YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YVIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA  N+DEV+ IIR S N + AR+ L++R           
Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R+E   +   I++  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + II++EL  +KD+    RR+ I     D+   D I  + +V+T+S+ GY+KR 
Sbjct: 456 AKKERRMSIIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G      R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q + +   +   +  DE   NN Y++ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDEVKAFVCTGDLKDEDYINNHYIIMATKKGQVKKTALEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+LS +  T E+ ++L  K G+ +RF  S  R    RN+ GVRGI+L
Sbjct: 636 TNGINAITIKDNDELLSAKLTTGESQVMLALKSGKAIRFEESKTRPMG-RNASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   +++                                         
Sbjct: 695 ANDEDEVVGMVSVNDTESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+RI+NR GKG++   V++  + G LV++  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVSIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V +++
Sbjct: 761 DADDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVK 810


>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 847

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/903 (39%), Positives = 545/903 (60%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K
Sbjct: 3   EDMSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY TGRGSI+
Sbjct: 183 IPTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +++I+V EIPY VNKA ++ +IA+L R K I  I D+ DE+DR G R
Sbjct: 243 VRAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E+VV
Sbjct: 303 IVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA+ R H++ GL IA+ ++DE++ IIR S   E A+ ELM           
Sbjct: 363 RRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G   LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  D
Sbjct: 412 ---------------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ R R+  II  EL+ ++ +    RRT + V  + ++EDED I  +D++VT++H GY+
Sbjct: 457 ILAHRERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+  +++Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY  K + +P 
Sbjct: 517 KRLPVDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L+++  E+I+ ++     E++ ++ ++ F TK G V+R  + +F  I
Sbjct: 577 YGRAAQGIPIINLLNIDSKEKISAVINVSH-ETNDDDKFLFFTTKDGTVKRTPVPEFKNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++ V+    +  +++ T+ G  + F  + +R    R + GVRGI 
Sbjct: 636 RSNGLKAINLHDDDELIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSMG-RGAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI  A +   D                                           
Sbjct: 695 LRDNDSVIGAAPLHQDDN------------------------------------------ 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L +SE GFGK+T + ++ I  R G G++  +V+K N  G LV +  V 
Sbjct: 713 -----------VLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVA 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
            ++ I+LV+D+G +IR  +  +    R+  GV +       +V ++ ++ +E +  D+A+
Sbjct: 760 GDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDSDDDAQ 819

Query: 908 STE 910
            TE
Sbjct: 820 GTE 822


>gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/906 (39%), Positives = 539/906 (59%), Gaps = 73/906 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M Q+     + Y K AR+ 
Sbjct: 8   LNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKKSARVV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL R+AQD+++R  L++GQGNFGS+DGD PAA RYTE R+QK 
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEVRMQKL 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K TVD+ PNYD    EP VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 128 ASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPHNLTEL 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+ID+P I +  L   ++GPDFPTG VILG  GI++AY TGRGS+ +R    IE+
Sbjct: 188 LDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGTAGIRSAYLTGRGSVKVRARCEIEE 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               RE I+VTEIPYQVNK  ++E+IA LVR+K++  I+D++D SDR G R+ I++K+  
Sbjct: 248 DKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWIQVKKDH 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A ++LN+LY+ + LQ+ F VNM+A+   +PE   L   L+ F+  R  VV RR +Y L 
Sbjct: 308 AAQIVLNKLYKMSDLQTSFGVNMIAIVNGRPEVLNLEKCLRHFIDHRRTVVTRRCRYELA 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R  ++ GL +AV ++D V+ +IR S +P+ A+ +LM            ++  +  +
Sbjct: 368 KAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAE--PLDGFAKFLERCERPA 425

Query: 439 YTIGS--DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             I     G   L+E Q +AIL++RL RLTGL RD +  E   L   I E   IL+   +
Sbjct: 426 EEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESILTDPDK 485

Query: 497 LLGIIKQELLSVKDELDTP---------------RRTRIVEGLLDMEDEDCIVREDMVVT 541
           L+ +I++ELL+++ E   P               RRT ++   L+++  D +  E MVV 
Sbjct: 486 LMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVADESMVVM 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++   YVKR+P   YR Q RGG G      R D+D + +LF  S H  VL F++ G V++
Sbjct: 546 ITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFTNTGRVFR 605

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           ++V+  P+G+   R KAL+N L L +GE+I  ++ + E E   ++ +VV A++ G ++R 
Sbjct: 606 KRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYRE-EEVDDDHFVVLASRQGYIKRT 664

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS+F  I  SG IA  +   D ++  +      DI++ ++ GQ +RF  + +R    R 
Sbjct: 665 SLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVRPMG-RT 723

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  GD+V+++ ++                                    D  
Sbjct: 724 ARGVRGMGLRDGDEVVNILVL------------------------------------DRE 747

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            EG +               LTV EKG+GKRT + ++R  +RSG G++   VS+ N  G 
Sbjct: 748 NEGEVG-------------FLTVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V +  V + DQ+++V+ +G +IR PV  I    RAT+GV +     +E VV + R+ + 
Sbjct: 793 VVGMVKVREADQLMVVTSQGKIIRTPVAGISELGRATQGVRLIRLNDEEVVVGLARVDDP 852

Query: 901 EIVDEA 906
              +E 
Sbjct: 853 SDGEEP 858



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 17/275 (6%)

Query: 520 IVEGLLDMEDEDCIVRE----DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           + EG   +E       E      VV  S  GY+KR  LS +  Q     G     + + D
Sbjct: 629 LKEGEQILEMVAYREEEVDDDHFVVLASRQGYIKRTSLSEF--QNIRSSGLIAANVVEGD 686

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            + D  + +    ++  S  G   +     +      ARG   +  + L  G+ +  I+ 
Sbjct: 687 MLIDAKLTNGGCDIIMASREGQAIRFDEADVRPMGRTARG---VRGMGLRDGDEVVNILV 743

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQ 692
              D  +   +  +   + G  +R   S++   +RSG   K     +   +++ +    +
Sbjct: 744 L--DRENEGEVGFLTVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERNGKVVGMVKVRE 801

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + +++ T  G+ +R P++ I     R + GVR I L   + V+ +A V   D    E  
Sbjct: 802 ADQLMVVTSQGKIIRTPVAGISELG-RATQGVRLIRLNDEEVVVGLARV--DDPSDGEEP 858

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +  +      +         ++  +  G  ++
Sbjct: 859 TEGEAAALAEGEAAPAEAADGPAEDAEAESGADAD 893


>gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 823

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 538/905 (59%), Gaps = 87/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P      ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLP---QGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R    R++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMG-RSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+                                            
Sbjct: 693 GINLREGDYVVGSGILKP------------------------------------------ 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 711 -----------EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +  E+E   
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 905 EAEST 909
           E E+ 
Sbjct: 818 EPETE 822


>gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 823

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/905 (39%), Positives = 539/905 (59%), Gaps = 87/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P      ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLP---QGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R    R++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMG-RSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+                                            
Sbjct: 693 GINLREGDYVVGSGILKP------------------------------------------ 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 711 -----------EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +  E+E   
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 905 EAEST 909
           E E+ 
Sbjct: 818 EPETE 822


>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
 gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
          Length = 879

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/863 (42%), Positives = 531/863 (61%), Gaps = 25/863 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H +L+DL K+TVDF PNYDGS  EP+V+ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIGHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+ GC+A+++NP + ++ L+  I  PDFPT  +I G TG++  Y TGRG ++
Sbjct: 182 IPPHNLNEVIAGCLALLENPALSIEDLIAYIPAPDFPTAGLIYGMTGVREGYQTGRGRVI 241

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +H E    S  R+ ++V EIPYQVNK +++EKIAELV EK+I  I+D+RDESD+ G
Sbjct: 242 MRARTHFEDMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+ F++ R E
Sbjct: 302 MRIVIELKRGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLSHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W ++ +
Sbjct: 362 VITRRTVYELRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVV 421

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++      +            S     LS+ Q +AILELRL RLTGL +D I  E   
Sbjct: 422 EEMLVRAASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKD 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I + LDIL+   R+  II  EL++++++    RR+ I+    ++  ED I  +DMV
Sbjct: 482 VMAKILDLLDILAKPERITEIIVTELVAIREQFGDERRSEIILQTHELSLEDLITPQDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K  PL+ YRAQRRGG+G+    ++DEDFV  LF+ +TH  +L FS+ G  Y
Sbjct: 542 VTLSHGGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+  P GS  +RGK ++N+  L +GERI  ++P  E     ++ ++  AT+ G V++
Sbjct: 602 WLKVYEAPQGSRVSRGKPIVNLFPLEEGERINAVLPVKEFA---DDKFIFMATRAGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LSDF    ++G IA+ L   D ++ VE  T ++DI+L +  G+ V F    +R    R
Sbjct: 659 TPLSDFSNPRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKN 777
            + GVRG+ L  G  VIS+ +               + K         SG   +      
Sbjct: 718 GARGVRGMKLQAGQAVISLLVAESDQQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIA 777

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           DS   G +      +L      ++ ++  G   RT   + R   R+ +G+    +    +
Sbjct: 778 DSERNGVV---IGAKLVDDNDEVMLITTGGVLIRTRVSEIRGMGRATQGVTLISLDDGEK 834

Query: 838 IGAL------VAVFPVNDNDQII 854
           +  L      VA   V    +++
Sbjct: 835 LAGLEKVAESVAEAEVEGESEVV 857



 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 104/260 (40%), Gaps = 14/260 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +   +  G VK+ PLS +   R+   G   V + D+D++  + 
Sbjct: 630 ERINAVLPVKEFADDKFIFMATRAGTVKKTPLSDFSNPRKA--GIIAVDLLDDDYLIGVE 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +  + ++  S+ G         +      ARG   +  + L  G+ + +++    D+ 
Sbjct: 688 LTTGQSDIVLVSNAGKAVWFDEEDVRPMGRGARG---VRGMKLQAGQAVISLLVAESDQQ 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           +     V+ AT++G  +R  L+DF    R   G  A+        ++  +     ++++L
Sbjct: 745 T-----VLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERNGVVIGAKLVDDNDEVML 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +S IR    R + GV  ISL  G+++  +  V  + A+ +         
Sbjct: 800 ITTGGVLIRTRVSEIRGMG-RATQGVTLISLDDGEKLAGLEKVAESVAEAEVEGESEVVA 858

Query: 759 SAQRRLISGDTEEITSLKND 778
                    + +  ++   +
Sbjct: 859 PETGDAAPSEGDVASNEGGE 878


>gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341]
          Length = 833

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSTEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
          Length = 878

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/855 (44%), Positives = 542/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+  TL  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI L +GD V+S+ +      +L A  +   +   ++    + R   G      + +N 
Sbjct: 722 RGIRLGEGDSVVSLIVPRGEGAILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     ++  Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 PVVGAVQVDDADQ--------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    D++++
Sbjct: 834 VGLQRVAEPVDDEEL 848


>gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 843

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/900 (43%), Positives = 558/900 (62%), Gaps = 68/900 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K IT ++I +E+ +SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +G  WN+
Sbjct: 2   NDFAKEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ + +R  L++GQGNFGSVDGDP AA R
Sbjct: 62  NYKKSARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ LL DL K+TVD+  NYDG+   P +L AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEVRMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI ++ LM+ I GPDFPT A+I    G+K AY+TGRG I 
Sbjct: 182 IPPHNLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDSGGLKEAYSTGRGKIY 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  S IE      RE IV+ EIPYQVNKA +LEKIAEL + KRI  I +LRDESD+ G 
Sbjct: 242 IRARSEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A ++VILN LY  TSLQ+ F +NMVAL+  +P+  +L  IL AFV  R  V
Sbjct: 302 RIVVEIKRDAISEVILNNLYSLTSLQTSFGINMVALHQGQPKIMSLKDILSAFVCHRRAV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR  + L KAR R H+L GLAIA+ N+D V+++IR S +   A   L+  SWN  ++ 
Sbjct: 362 VIRRVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVF 421

Query: 429 DLIDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D+                     +    L++ Q +AIL+L+L +LT L  + +  E +SL
Sbjct: 422 DMKQRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IK  + IL     L+ +I+QELL +++E +  RRT I   + ++  E+ I ++D+VV
Sbjct: 482 LEKIKNLISILKDPKCLMRVIRQELLMIQEEYNDSRRTEISSNIENINVENLINQKDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y 
Sbjct: 542 TLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNYGRIYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP  S  +RGK +IN+L L+  ERIT I+P    ++      V  AT  G V++ 
Sbjct: 602 MKVYRLPAASRGSRGKPIINLLPLDVNERITAILPI---QNYTTGHQVFMATSSGVVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F +    G IA+ L+  DE++  +     N+++L T  G+ VRF  + +R    R+
Sbjct: 659 PLTEFSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRSVG-RS 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           ++GV+GI L +GD+V+S+ I                                        
Sbjct: 718 AIGVKGIHLLQGDRVVSLII---------------------------------------- 737

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           +  ILTV+  GFGKRT+  ++ I +R+ +G+ +  V++ N  G 
Sbjct: 738 -------------PKDKSSILTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTERN--GN 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++    VN +DQI++++D G L+R  V+E+ I  R T+GV++  TA +E VV ++ + ES
Sbjct: 783 VIGAVQVNQSDQIVMITDLGRLVRTRVSEVNIIRRNTQGVMLIRTACNECVVGLQCVVES 842


>gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
 gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
          Length = 850

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/896 (41%), Positives = 552/896 (61%), Gaps = 85/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV     +
Sbjct: 3   EGEKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A I+NP+I++D L+  I+ PDFPTG VI G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGGVIFGYEGVKEAFHTGRGRVVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    +E I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKAIIEEVQ-GKECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YTSLQS FSVN +AL   +P++  +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALVNGRPQQLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA DRAH+L GL IA  N+DEV+++IR S +P+ AR  LM+R           
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E N +   I +  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDIIATIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  VK +    RR+ I      +  ED I  E +V+T+SH GY+KR 
Sbjct: 456 GDKERRMSIIKEELQEVKTKYGDARRSEINYAGGSLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 ALSEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++++Q +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINISQEDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + + L  K G+ +RF  S  R    R + GVRG+SL
Sbjct: 636 TNGINAIGVREGDELLEAKLTTGTSQVFLGLKSGKAIRFEESKTRPMG-RGASGVRGVSL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V + +                                           
Sbjct: 695 ANDQDEVIGMITVHNEE------------------------------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R++NR GKG++   +++  + G LVA+  V 
Sbjct: 712 ---------DHILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITE--KTGGLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D+D +++++  G  IR+ V ++R+  RAT+GV + +  +++ + +V ++ + E  +
Sbjct: 761 DSDDLMIINKSGIAIRLGVEDLRVMGRATQGVKLINIRENDSIAAVAKVMKEEEEE 816


>gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302]
          Length = 833

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK72]
          Length = 826

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 553/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+I+VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADNRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823


>gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 834

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 553/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAAADTTPNNDKE 834


>gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
 gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
          Length = 816

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/886 (40%), Positives = 509/886 (57%), Gaps = 89/886 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+R+ G+VMG 
Sbjct: 1   MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYD L R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+   A  +L 
Sbjct: 61  YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDG   EP+VL +R+PN+LVNG GGIAVGMATNIP HNL EV  G   
Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180

Query: 205 VIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            +D+PD     L+E    I++GPDFPT  +I+GR GI++AY TGRGSI +R V ++E  +
Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIVGRNGIEDAYRTGRGSIRMRAVVNVE-EN 239

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGAS 319
             R Q+VVTE+PYQVN   + EKIAELVR+ +I  I+D+RDE+  R G R+VI+LKR A 
Sbjct: 240 KGRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDAV 299

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A V+LN LY++T LQ  F VNM+A+    P    L  I+  +V  + EV+VRRT+Y L K
Sbjct: 300 AKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQIISYYVEHQIEVIVRRTRYQLRK 359

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R                   
Sbjct: 360 ARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMER------------------- 400

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE+Q  AIL+++L RL  L R  I +E   L  ++ E   IL+S +R   
Sbjct: 401 -------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVSELEAILASPARQRE 453

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II QEL  V ++    RRTR+V    DM  ED I RED+VVTV+  GY KR    +YR+Q
Sbjct: 454 IIGQELAEVVEKYGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQ 513

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +  A+G+ + 
Sbjct: 514 KRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 573

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           NIL+ +Q ERI  +M   + E++    Y+V ATK G  ++  L+DF      G +A+ L 
Sbjct: 574 NILAFSQDERIAEVMAIQDYEAA---PYLVLATKRGLCKKTALTDFDSNRAGGLVAINLR 630

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISM 738
             DE++S       +D+LL ++  Q +RF     ++   GR + GV G+     D+++SM
Sbjct: 631 DDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDDSDELLSM 690

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V+                                                        
Sbjct: 691 DVVVPD---------------------------------------------------TTA 699

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L  +  G+ KRT   ++ +  R GKG+    +  ++  G LV    V  +DQ+  ++ 
Sbjct: 700 DLLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVAPDDQLYAITS 757

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            G ++R    ++R A R T GV +       +VV V R  ++   D
Sbjct: 758 NGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVARNADANDSD 803


>gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 834

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 553/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A         +E
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNSDKE 834


>gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 834

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 554/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEAIEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 IEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A   +   + EE
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDMTPNNDEE 834


>gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 822

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/902 (41%), Positives = 558/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM             
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        G   LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 409 -------------GKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S  GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSDKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 DGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  V  I    R+T GV +    +D ++V   +V+ + + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVDAVEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK353]
          Length = 826

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 553/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
 gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
          Length = 877

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/897 (43%), Positives = 541/897 (60%), Gaps = 75/897 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD S  EP VL  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+  C+A+ID PD+ +  LM  I GPDFPT A+I G +GI NAY TGRG I +R  
Sbjct: 186 NLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAAIINGASGIYNAYTTGRGKIYLRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E      R+ I+ TE+PYQVNKA +LEKIAELV+E ++  I+ LRDESD+ G R+VI
Sbjct: 246 CHFEDIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY+ T  Q++F +NMVAL   +P    L  I+ AF+  R E+V RR
Sbjct: 306 ELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLDGRPHCMNLREIISAFINHRREIVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+RAH+L GLAIA+AN+DE++ +I+ +  P  A+  L++++W+A  +  L+D
Sbjct: 366 TIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALLD 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D                 G   LSE Q +AILELRL RLTGL +D I NE   L  +I
Sbjct: 426 RADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ II++EL+++K++    RRT I++   D+ DED I  EDMVVT+SH
Sbjct: 486 DEYLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y+AQRRGG+G+S    ++ D+V  L + +TH ++L FSS G VY  KV+
Sbjct: 546 EGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK  +N+L                                       L +
Sbjct: 606 QLPVASRAARGKPFVNLL--------------------------------------PLEE 627

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             +IN              IL +   T    I + T  G   + P+        + + G 
Sbjct: 628 GEKINA-------------ILPIREFTDSKFIFMATTAGTVKKTPLKEFE---NQRANGK 671

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             I L + D ++ +A+        D +   +   S  + +   + +  +  +  S V G 
Sbjct: 672 IAIDLREDDTLVGVAVT-------DGQQNVLLFSSTGKAVCFNEADVRSMGRTASGVRGI 724

Query: 785 ISEERCQELKL---KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +E  + + L    E  +L ++E G+GKRT   +F    R G+G+ A   S  N  GA+
Sbjct: 725 RLQEGQKVISLIIATEGTVLNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARN--GAV 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V    VNDND+I+L++D GTL+R PV+ I +  R T+GV I    K+E+V+ V+RI 
Sbjct: 783 VGAVLVNDNDEIMLITDGGTLVRTPVDGISVVGRNTQGVTIIKLGKNEKVIGVDRIE 839



 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 102/262 (38%), Gaps = 16/262 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+ PL  +  QR    G+  + +R++D +  + 
Sbjct: 629 EKINAILPIREFTDSKFIFMATTAGTVKKTPLKEFENQR--ANGKIAIDLREDDTLVGVA 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +     +VL FSS G         +      A G   +  + L +G+++ +++   E   
Sbjct: 687 VTDGQQNVLLFSSTGKAVCFNEADVRSMGRTASG---VRGIRLQEGQKVISLIIATE--- 740

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 V+  T++G  +R KL +F    R G+  + + +      ++        ++I+L
Sbjct: 741 ----GTVLNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARNGAVVGAVLVNDNDEIML 796

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR P+       GRN+ GV  I L K ++VI +  +       D     +   
Sbjct: 797 ITDGGTLVRTPV-DGISVVGRNTQGVTIIKLGKNEKVIGVDRIEGLAGVDDADEDDLLEG 855

Query: 759 SAQRRLISGDTEEITSLKNDSS 780
           +      S +T    S   + S
Sbjct: 856 AESELGASEETTNDDSEPGEES 877


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/905 (40%), Positives = 552/905 (60%), Gaps = 89/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905
            N+ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  + E E V+   E
Sbjct: 759 GNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817

Query: 906 AESTE 910
            ++TE
Sbjct: 818 EQATE 822


>gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233]
 gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233]
          Length = 831

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/907 (38%), Positives = 511/907 (56%), Gaps = 91/907 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +   +  E      V I  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+GM   G
Sbjct: 1   MTGPNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              ++  VK +R+ G+VMG YHPHG++ IYD + RMAQ WSLR  +I+GQGNFGS+  DP
Sbjct: 61  FRPDRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDP 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECRL + A  +LD +G+ TVD  PNYD    EP VL AR PN+LVNG  GIAV
Sbjct: 121 PAAMRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNA 240
           GMATNIP HNL EV    V  ++NP+   + L    ME I+GPDFPTGA+I+G+ GI +A
Sbjct: 181 GMATNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIVGKDGIADA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R V +IE+ +  R  +VVTE+PYQVN   ++E IA L ++ +I  IAD+ 
Sbjct: 241 YRTGRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADIA 300

Query: 301 DES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DES DR G R+VI LKR A A V+L  L+++T+LQ+ F  NM+A+    P    L  ++ 
Sbjct: 301 DESSDRIGMRLVITLKRDAVAKVVLANLFKHTALQTSFGANMLAIVDGVPRTLRLDQMIS 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +VA + EV+VRRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP+ E ++  LM+
Sbjct: 361 LYVAHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                      + + E+Q  AIL+++L RL  L R  I +EL  
Sbjct: 421 --------------------------LLDVDEIQATAILDMQLRRLAALERQRIIDELAE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +  DIL+   R   II+ EL    D+    RRTR+V    D+  ED I  ED+V
Sbjct: 455 LERVIADLKDILAKPERQRAIIRDELTEAVDKHGDDRRTRLVPYDGDVSVEDLIAVEDVV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++  GY KR    +YRAQRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY
Sbjct: 515 VTITRTGYAKRTKTDLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVY 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + LP  +  ARG+ + N+L+    ERI  ++  P  +++    Y+V ATK G V++
Sbjct: 575 RAKAYELPEANRNARGQHVANLLAFQPDERIAEVIQIPHYQAA---PYLVLATKGGLVKK 631

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
           ++L+ F      G +A+ L   DE++    C    D+LL +  GQ +RF  +   +   G
Sbjct: 632 SELAAFDSNRAGGIVAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPMG 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV G+    GD+++SM++V                                     
Sbjct: 692 RATSGVLGMRFNAGDELLSMSVVY------------------------------------ 715

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +   +L  +E+G+ KRT   ++ +  R GKG+      +    
Sbjct: 716 -----------------EGAQVLVATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRR--R 756

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LV    V+ + ++  ++    +IR    E+R A R T GV + + ++ + +V++ R  
Sbjct: 757 GKLVGALIVDLDTEVYAITSGAGVIRTQAREVRKAKRQTMGVRLMNLSEGDSLVAIARNA 816

Query: 899 ES-EIVD 904
           +  + VD
Sbjct: 817 DDADTVD 823


>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
          Length = 874

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/855 (45%), Positives = 546/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE +    +E I+VTEIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RR
Sbjct: 306 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             D   YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 486 AELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L+ Y AQRRGGKG++   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 546 EGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P  E E+   + +V  AT  G V++  L+D
Sbjct: 606 QLPLASRTARGKPIVNILPLEENERITAILPVKEYEA---DKFVFMATADGTVKKTPLTD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L + D ++ V+     NDI+L +K G+ VRF    +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLRNEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAMG-RTAAGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA+ D V+S+ +      VL    +   +   ++   A+ R   G      S +N 
Sbjct: 722 RGIKLAESDNVVSLIVPHNDGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S V      E            + ++  G   RT   +     R+ +G+     ++  ++
Sbjct: 782 SVVGAVQVLE--------GDEFMMITNGGTLVRTRVREVSRVGRNTQGVTLIRTTEEEKV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  +   +++D I
Sbjct: 834 VGLQRIDEPDEDDII 848



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 165/435 (37%), Gaps = 39/435 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E + +++       ARR  
Sbjct: 463 LHKLTGLEHEKILDEYKALLEEIAELLHILSSAERLMEVIREELELVK--EQFNDARRTE 520

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D++DLI+  D     + +       + Q     E +     G     +++E 
Sbjct: 521 ITAATHDIDLEDLINQED----VVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDE- 575

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    +  +  +K  +L    RT     IV        E +
Sbjct: 576 ----DFIERLLVANTHDTILCFSTRGRMYWLKVYQLPLASRTARGKPIVNILPLEENERI 631

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +        +  V   +  G VK+ PL+ +   R    G   V +R+ED +  + I  
Sbjct: 632 TAILPVKEYEADKFVFMATADGTVKKTPLTDFSRPRSA--GIIAVNLRNEDTLIGVDITD 689

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            +  ++ FS  G V +    ++      A G   +  + L + + + +++         N
Sbjct: 690 GNNDIMLFSKAGKVVRFNEGQVRAMGRTAAG---VRGIKLAESDNVVSLIV------PHN 740

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
           +  V+  T++G  +R +L ++   +R+  G +++K+      ++      + ++ ++ T 
Sbjct: 741 DGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITN 800

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +  +    GRN+ GV  I   + ++V+ +  +   D D       +  +   
Sbjct: 801 GGTLVRTRVREV-SRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDEDDIIEDAEITEVENT 859

Query: 762 RRLISGDTEEITSLK 776
               +   +  +S +
Sbjct: 860 ETPAADSEQGDSSEE 874


>gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 833

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 552/905 (60%), Gaps = 89/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  + E E V+   E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817

Query: 906 AESTE 910
            ++TE
Sbjct: 818 EQATE 822


>gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/887 (41%), Positives = 552/887 (62%), Gaps = 85/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+++    Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--EHYLFFATRQGIVKRANVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R    R + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNMG-RTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                                                 
Sbjct: 693 EGDHLVGATIVS------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L +SE G+GKRT + ++    R GKGI    V+  ++ G L  +  V  +
Sbjct: 705 -----DDQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVA--DKNGPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + I++++D G +IR  +  I    R+T GV +    ++ ++++   +
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALV 804


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/888 (43%), Positives = 551/888 (62%), Gaps = 51/888 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK 
Sbjct: 3   DNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GCVA+I +P I +D LM  I GPDFPT A+I GR GI++AY TGRG I +
Sbjct: 183 PPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE  S  +E IVV EIPYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+
Sbjct: 243 RAKAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR  SA+V+LN LY  T LQ++F +NMVAL+  +P+ F L   L+ F+  R EVV 
Sbjct: 303 VIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P  A++ L+ + W+  D+  +
Sbjct: 363 RRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++   D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   L  
Sbjct: 423 LERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E L IL+S  RL+ +I++EL  V+DE    RRT I     D++ ED I +ED+VVT+
Sbjct: 483 IIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIEQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GYVK   L+ Y AQRRGG+G+S   M+DEDF+  L + +TH  +L FS+ G +Y  K
Sbjct: 543 SREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYWLK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  ARG+ ++NIL L + ERIT I+P  E E      +V+ AT +G V++  L
Sbjct: 603 VYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEE---GKFVLMATANGTVKKTDL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS----------- 711
           S + +   SG IA+ L+  DE++ V+    ++DI+L +  G+ VRF              
Sbjct: 660 SLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKR 719

Query: 712 ---------AIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMK 756
                    A+R    R + GVRGI L  G +V+S+ +      +L A  +   +   ++
Sbjct: 720 DPETGEELLALRPMG-RTATGVRGIRLQDGQKVVSLIVPKGDGPILTATENGFGKRTPLE 778

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A+ R   G      S +N   V     +E  +        I+ +S++G   RT   +
Sbjct: 779 DYPAKSRATQGVVSIKVSERNGKVVGAVQVDETNE--------IMLISDQGTLVRTRVGE 830

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI-----ILVSDK 859
             +  R+ +G+R     +   +  L  +  V +  +      +++SD 
Sbjct: 831 VSVVGRNTQGVRLIRTVEGEHVVGLQRIEEVEELQEFDEDGNLIISDD 878


>gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
 gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
          Length = 816

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/888 (40%), Positives = 547/888 (61%), Gaps = 85/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D  S +N Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGETIQTIINVQQD--SSDNSYLFFTTRLGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 693 DGDQVVGAGVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 704 ----TEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   + 
Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVA 805


>gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 815

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/897 (41%), Positives = 554/897 (61%), Gaps = 88/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ K+TVDF  NYD S +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM R           
Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------YKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQRRGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+         +N Y+ F T++G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINV--QAEHDDNSYLFFTTRYGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK+G  VRF  S +R    R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNMG-RAATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 AGDHVVGASVISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++   +R GKG++  ++++ N  G L  +  VN +
Sbjct: 706 ------DQEVLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKN--GPLAGLMAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVD 904
           + ++++++ G +IR  V  I    RAT GV +    K  ++V   SV    E E+ +
Sbjct: 758 EDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVDE 814


>gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 849

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/900 (45%), Positives = 595/900 (66%), Gaps = 53/900 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D    K I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MKDTEIPKD----KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+
Sbjct: 57  YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG G
Sbjct: 117 DGDPAAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGE++DG +A+I+N DI +  LM+ I GPDFPTG VI+G+  IK  
Sbjct: 177 GIAVGMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IRG   +E     RE++V+T +PYQVNK+ + E+IA+LVREK+I  I D+R
Sbjct: 237 YNVGRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RV I+L+ G   + I   LY+ TS++S F  N +A+   KP+   L   L  
Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICNLKEFLTN 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+VV+++TK+ L KA DRAH+L+GL+++V NLD++++IIR S  P+ A++ L+  
Sbjct: 357 FLTFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNT 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  +    LI L++D            LS+ Q  AILELRL +LT LG ++I  E+  L
Sbjct: 417 KWKINKSLKLISLVEDK----KEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK    I++S+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I +E +++
Sbjct: 473 ADLIKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVII 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  LS  + Q+RGGKG+SG+  RDED V     V+THTSVLFFS+ G VYK
Sbjct: 533 TVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYK 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K W++P GS  ++GK+L NIL L   + I++IMPFP++ES   NL +VFAT  G VR+N
Sbjct: 593 IKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKN 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF  IN +GKIA+KLD  D+I+ VE C  + D++L+TK G+C+RF    +R+F GR+
Sbjct: 653 SLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRS 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G++GI L+  D+++S++I        D                               
Sbjct: 713 SKGIKGIELSPNDEIVSLSITNKEKIKKDT------------------------------ 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                        K   +F+L+++E G+GK+T + ++R++NR GKGI     S  N  G+
Sbjct: 743 -------------KSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GS 787

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + + FPV + D +++ ++KG +IRV V EIR A R T+GV I   + DE+VVS  +I ++
Sbjct: 788 ICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDDN 847



 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 17/249 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+  I   L+   E    ET  +E+ I+  T  G   R  +S+++    R   G  GI
Sbjct: 507 PRRTKIIDAILNYDIE----ETIQKESVIITVTLQGYIKRGALSSVKQ-QKRGGKGKSGI 561

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-----DSSV 781
           +    D V+ ++++  H    +      +  + A +      T +  SL N     +   
Sbjct: 562 TTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLFNILPLKNHQS 621

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +I     +E   K   I+  + KG  ++ S  DF   N +GK   A  +   ++   +
Sbjct: 622 ISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIKLDPNDK---I 676

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRES 900
           V V    D+  ++L +  G  IR    ++RI   R++KG+     + ++ +VS+    + 
Sbjct: 677 VGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKE 736

Query: 901 EIVDEAEST 909
           +I  + +S 
Sbjct: 737 KIKKDTKSD 745


>gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012]
          Length = 828

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36]
 gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36]
          Length = 826

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G   +N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPAVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R    R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMG-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 823

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 539/905 (59%), Gaps = 87/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRI++GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P      ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLP---QGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R    R++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMG-RSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+                                            
Sbjct: 693 GINLREGDYVVGSGILKP------------------------------------------ 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 711 -----------EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +  E+E   
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 905 EAEST 909
           E E+ 
Sbjct: 818 EPETE 822


>gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
          Length = 831

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/912 (39%), Positives = 521/912 (57%), Gaps = 89/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +            +  V + DEMQ  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MDDQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  NK Y K ARI G+V+GKYHPHG++++YDA+ R+AQD+S R L+++G GNFGSV
Sbjct: 61  NEAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+ K A  +L D+ KDTVDF PNYD S +EP VL A+ P +L+NG  
Sbjct: 121 DGDPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSA 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD CV +ID+PD  ++ LM  ++GPDFPTGA ILG +GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGLSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +H+E    ++ +IVVTEIPYQVNKA ++E IA LV++K +  I DLR
Sbjct: 241 YTTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIEL+     +++LN+LY++T LQ  F + M+AL    P    L  IL+ 
Sbjct: 301 DESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRILNLKQILEY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +++V+ R+ +Y L KA++RAH+L GL IA+ +LDEV+  IR S N E A+  LM++
Sbjct: 361 YLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALMEK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I +E   +
Sbjct: 421 --------------------------FGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEV 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I    D+LS   +++GI +++LL VK      RRT IV    D+E ED I  ED+V+
Sbjct: 455 MATIAYLEDVLSDEHKIMGIAREDLLDVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--------DEDFVTDLFIVSTHTSVLFF 592
           T+SH  Y+KR  L+ +R Q RGG+G      +          DF   L + STH ++LFF
Sbjct: 515 TISHQSYIKRQALTNFRNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY++K + +P  S  A+G  + N+L L + E++  ++      S     ++  AT
Sbjct: 575 TNRGRVYRQKGFEIPEASRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMAT 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  +S+F    + G IA+ L   +E++ V+  +  NDILL T+ G  + F    
Sbjct: 635 NLGYVKRTSVSEFKSARKGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDD 694

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R S GVRGISL   D V+SM   +    +                         
Sbjct: 695 VRPMG-RTSHGVRGISLRPHDSVVSMDSCVDDTGE------------------------- 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                      +LTV++KG GKRT   ++R+  R GKGI    V
Sbjct: 729 ---------------------------VLTVTDKGQGKRTDISEYRVQTRGGKGIINLKV 761

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  +  G +V    +N+   I+L+S  G +IR+   +I    R  +GV +      ++V 
Sbjct: 762 T--DRTGLIVGSKFINETHDIMLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVA 819

Query: 893 SVERIRESEIVD 904
           ++  +      +
Sbjct: 820 ALAIVNTVSEDE 831



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 100/250 (40%), Gaps = 31/250 (12%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD  DE+++          +  +  G+  +  +      + R +  +  + L    
Sbjct: 390 LKIALDHLDEVIA---------TIRASANGEVAKAALMEKFGLSDRQAQAILDMRLQRLT 440

Query: 731 -------KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                  + +    MA +    A  ++ +     +    R    D ++       +S+  
Sbjct: 441 GLERQKIEDEYKEVMATI----AYLEDVLSDEHKIMGIAREDLLDVKKRFGDARRTSIVP 496

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +  +   ++L  +E  ++T+S + + KR +  +FR  NR G+GI+A     + E   +  
Sbjct: 497 DTGDLETEDLIAEEDVVITISHQSYIKRQALTNFRNQNRGGRGIKAGSGKIVKEDNKVKG 556

Query: 844 -----VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVE 895
                +   + +D I+  +++G + R    EI  ASR  KG     +    ++E+V +V 
Sbjct: 557 DFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTFIRNLLPLEENEKVNAVI 616

Query: 896 RIRESEIVDE 905
            ++     DE
Sbjct: 617 AVKSGISEDE 626


>gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
 gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
          Length = 832

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
 gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 833

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 832

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/898 (41%), Positives = 554/898 (61%), Gaps = 86/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +V I DEM+N Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M QMG+  +K + K
Sbjct: 12  HNLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPFRK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++++YDA+ RMAQD+S R + + GQGNFGSVDGD  AA RYTE 
Sbjct: 72  SARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYTEA 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + +  +L D+ K+TVDF  N+DGS QEPVVL +R+P++LVNG  GIAVGMATNIP H
Sbjct: 132 RMSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG +A ID+PDI +D LM  I+GPDFPT  VILG++GI+ AY TGRG I IR  
Sbjct: 192 NLGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVILGKSGIREAYETGRGRIKIRSK 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVI 312
             ++  +  ++QIV++EIPY VNKA +++KIAELV++KR+  I D+RDE+D + G R+V+
Sbjct: 252 VAVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIRIVV 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR  +A ++LNQLY++T LQ  + V  +AL   +P+  +L  IL  +VA ++E++VRR
Sbjct: 312 ELKRDTNATIVLNQLYKHTQLQDTYGVINLALVDGQPKVLSLKQILHYYVAHQKEIIVRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA  RAH+L G  IA+ N+DEV++IIR S + + A+  LM R            
Sbjct: 372 TKFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDR------------ 419

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+++Q +AIL++RL RLTGL R+ I  E   L  +I E   IL+
Sbjct: 420 --------------FALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILA 465

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
               +LGIIK EL  +KD+    RRT     + D + ED I  E++VVT++H+GYVKR+ 
Sbjct: 466 DEKLVLGIIKDELTEIKDKYGDDRRTSFDIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIA 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YRAQ RGGKG S +  R+ DF+  +F  STH  +LFF++ G  Y+ K + +P+G   
Sbjct: 526 ADTYRAQNRGGKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRT 585

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG A++NIL L+  E ITT++     E+   + Y V AT+HG +++  ++D+    ++G
Sbjct: 586 SRGTAIVNILQLDPDESITTMIQVKTFEA---DKYFVMATRHGLIKKTAMTDYESSRKNG 642

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + L   DE++ V+      D+++ T LG  +RF +  +    GR S+GVRGI L   
Sbjct: 643 INGINLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNA-TGRMSMGVRGIGLRAD 701

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M +++                                                  
Sbjct: 702 DHVVGMDLLI-------------------------------------------------- 711

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +L V+EKG+GKRTS+  +R+  R GKGI+    +K  + G LV    + D  +
Sbjct: 712 ---ADNNVLCVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTK--KTGNLVGFSVLEDGGE 766

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           I+++++ G +I++  ++I    R+T+GV +     DER+ ++ +++  E +D+ +  +
Sbjct: 767 IMMINNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIATICKVQNEEPLDDVDIED 824


>gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
          Length = 850

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/914 (37%), Positives = 530/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNPD D +A     ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE  SG R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIE-ESGSRQTIVITELPFQVNPDNLISNIAESVASGKIAGI 295

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y LN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L +L  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRKLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I+  EL  + D+    RRT I+    D+ DED I R
Sbjct: 450 ELAEIEREIADLKDILAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPEGGRAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++SM++V                                 
Sbjct: 687 RPMGRATAGVKGMRFRGDDQLLSMSVVHD------------------------------- 715

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  +F+L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 716 ----------------------GEFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V+++D+I  ++  G +IR  V++IR +SRAT GV + + A D  ++++
Sbjct: 754 --KRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLADDVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           +R  E +  ++A++
Sbjct: 812 DRNVEEDGEEDAQA 825



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 97/260 (37%), Gaps = 13/260 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +           +V  +  G VK+  L+ Y + R    G   + + + D +   
Sbjct: 601 EEKIAQVIQIQSYEDAPYLVLATQQGRVKKSRLTDYESARSA--GLIAINLNEGDALIGA 658

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            +VS    +L  S  G   +          P  R  A +  +     +++ ++    + E
Sbjct: 659 QLVSEGDDILLTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVVHDGE 717

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDIL 697
                 +++ AT  G  +R  + ++    R G   M       R +++   +  ++++I 
Sbjct: 718 ------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIF 771

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T  G  +R  +  IR  + R ++GVR ++LA   +++++   +  D + D +      
Sbjct: 772 AITSAGGVIRTEVDQIRP-SSRATMGVRLVNLADDVELLAIDRNVEEDGEEDAQAVAKGE 830

Query: 758 MSAQRRLISGDTEEITSLKN 777
            +           + +  + 
Sbjct: 831 KTVDEVQQEHKAGDASKDEE 850


>gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645]
          Length = 833

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            N+ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 828

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/902 (40%), Positives = 546/902 (60%), Gaps = 87/902 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E +   I  + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+  
Sbjct: 2   STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NK Y K AR+ G+ MGK+HPHG+++IYDA+ R+AQD+S R  LI+G GNFGSVDGD  AA
Sbjct: 62  NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K   ++L D+ KDTVDF+PNYD   QEP V+ A++PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMAKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++G +A IDNP+I++  LM  I+GPDFPTGA I+G  GI +AY TG+GS
Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGS 241

Query: 248 IVIRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              R  +H+ E     + +I+VTEIPY VNKA ++EKIAELVREKRI  I DLRDESDR 
Sbjct: 242 FRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRT 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R  +  V+LNQLY++T ++  F VN++AL   +P+   L  I+  F+  ++
Sbjct: 302 GMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA   AH+L GL IA+  +DEV+ IIR S + ++A+  LM R      
Sbjct: 362 DVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q++AI+++RL RLTGL R+ I  +   +   I  
Sbjct: 416 --------------------FGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+S   +L IIKQEL  VK++    RRT I      M  ED I  E++V+T+SH G
Sbjct: 456 LKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+PL+ Y++QRRGGKG  G+  R+EDFV  +F  STH  +LFF++ G VY+ K   +
Sbjct: 516 YIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEI 575

Query: 607 PIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P      +G AL+N+LS+N   E+IT ++   +      + ++  AT+ G V++  L ++
Sbjct: 576 PEAGRTGKGTALVNLLSINPSEEKITAVLSIRKYNE---DFHLFMATRKGIVKKTLLKEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               + G IA+ L   DE++ V     +  I++ TK G C+RF  S +R    R + GV+
Sbjct: 633 DSPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQMG-RTAHGVK 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL K D V+SM ++   +A+                                      
Sbjct: 692 GISLEKEDLVVSMDVIYEEEAE-------------------------------------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         IL+++E GF KRTS  ++R+  R GKGI AT ++   + G LV + 
Sbjct: 714 --------------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNA--KTGKLVGLK 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +   + ++++++ G +IR  V+ I    R+ +GV+     +  +VV++  +   E  +E
Sbjct: 758 VMRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIGES-KVVAIAVVDNKEDAEE 816

Query: 906 AE 907
           ++
Sbjct: 817 SD 818


>gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 823

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 538/905 (59%), Gaps = 87/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D ++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDALLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P      ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLP---QGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R    R++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMG-RSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+                                            
Sbjct: 693 GINLREGDYVVGSGILKP------------------------------------------ 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 711 -----------EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +  E+E   
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 905 EAEST 909
           E E+ 
Sbjct: 818 EPETE 822


>gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 833

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 543/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L I I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLIFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 553/905 (61%), Gaps = 89/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+ +++++ N  G L  +  V+
Sbjct: 705 ----LMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  + E E V+   E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817

Query: 906 AESTE 910
            ++TE
Sbjct: 818 EQATE 822


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/855 (44%), Positives = 541/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLA+A+ N+D ++ +IR +  P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              L IL S  RL+ +I++EL ++K++ +  RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRGRLYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI+L   D+V+S+ +      +L    +   +   +     + R   G      S +N 
Sbjct: 722 RGINLQDDDRVVSLIVPRGEGDILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + V     +   Q        I+ +++ G   RT   +  I  R+ +G+     ++   +
Sbjct: 782 NVVGAVQVDTTDQ--------IMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    ++D++
Sbjct: 834 VGLQRVAEPVEDDEL 848



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 97/262 (37%), Gaps = 15/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L+ +   R    G   V + D D +  + 
Sbjct: 629 ERITAILPVREYEEGLNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLNDGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS+ G V +     +      A G   +  ++L   +R+ +++       
Sbjct: 687 LTDGSNEVMLFSAEGKVVRFSESAVRTMGRTATG---VRGINLQDDDRVVSLIV------ 737

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  T++G  +R  ++D+   +R+  G I++K+      ++        + I++
Sbjct: 738 PRGEGDILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERNGNVVGAVQVDTTDQIMM 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S + +   RN+ GV  I  A+ ++V+ +  V     D +         
Sbjct: 798 ITDAGTLVRTRVSEVSIVG-RNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDGVVAVDG 856

Query: 759 SAQRRLISGDTEEITSLKNDSS 780
                 +  + +       D  
Sbjct: 857 EELAEDMPDEPDNEDDAPVDDE 878


>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
 gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
          Length = 878

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/855 (44%), Positives = 542/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMALKEILAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI L +GD V+S+ +      +L A  +   +   ++    + R   G      + +N 
Sbjct: 722 RGIRLGEGDSVVSLIVPRGEGAILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     ++  Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 PVVGAVQVDDADQ--------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    D++++
Sbjct: 834 VGLQRVAEPVDDEEL 848


>gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 850

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/914 (37%), Positives = 529/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNPD D +A     ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE  SG R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIE-ESGSRQTIVITELPFQVNPDNLISNIAESVASGKIAGI 295

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y LN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L +L  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRKLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I+  EL  + D+    RRT I+    D+ DED I R
Sbjct: 450 ELAEIEREIADLKDILAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPEGGRAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++SM++V                                 
Sbjct: 687 RPMGRATAGVKGMRFRGDDQLLSMSVVHD------------------------------- 715

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  +F+L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 716 ----------------------GEFLLVATSGGYGKRTAIEEYTTQGRGGLGVMTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V+++D+I  ++  G +IR  V++IR +SRAT GV + +   D  ++++
Sbjct: 754 --KRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLGDDVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           +R  E +  ++A++
Sbjct: 812 DRNVEEDGEEDAQA 825


>gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch
           sediment']
          Length = 841

 Score =  764 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/908 (42%), Positives = 556/908 (61%), Gaps = 86/908 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E            +    I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MPEEQQHIGLNRVGEVRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+   + Y K ARI GEV+GKYHPHG+ A+YD + R+ QD+S+R  LI+GQGNFGSV
Sbjct: 61  QELGLSAGRSYKKAARIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL K A  +L D+ K+TVD  PN+D + +EP +L A  PN+LVNG  
Sbjct: 121 DGDAPAAMRYTEVRLAKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E VD  + ++++PD   D LM ++ GPDFPTGA I GRTGI++A
Sbjct: 181 GIAVGMATNIPPHNLSETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIYGRTGIRDA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +EK+ G RE I+V+E+PYQVNKA ++E+IAELVR+++I  IADLR
Sbjct: 241 YLTGRGLIRMRAKAFVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELK+   A  ILNQL+++T++QS F   M+AL   +P+   L   L  
Sbjct: 301 DESDREGMRIVIELKKEQPAPPILNQLFKHTAMQSTFGAIMLALVEGQPKVLALKEALSH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +V+RRT++ L KA +RAH+L G  IA+ +LD V+ +IR S + + AR  LM++
Sbjct: 361 FIEHRKTIVIRRTRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQ 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +S++Q +AILELRL RLT L R  I++E +  
Sbjct: 421 --------------------------FGMSQIQAQAILELRLQRLTQLERQKIQDEYSET 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL+S + +  IIK+ELL++K+     RRT I+E   ++E ED +  E+MV+
Sbjct: 455 IAAIERYRAILASEALVCQIIKEELLAIKETYGDLRRTEILEETTEIELEDMLADEEMVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++H GY+KR  L+ YR+QRRGGKG +G+  ++ED+V  LF+ +TH+ +L F++ G V+ 
Sbjct: 515 PITHGGYIKRSNLNAYRSQRRGGKGMTGMATKEEDYVEHLFVATTHSHLLLFTNQGKVHW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP     A+GKAL N L L  GE+ITT++P  + E    + Y++ AT+ G V++ 
Sbjct: 575 LKVYGLPQLGHAAKGKALANFLQLGVGEQITTVIPIRQFE---VDRYLLMATRRGIVKKT 631

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +L+ +      G IA+ LD  DE+++V     +++ILL T+ G  +RF    +R  AGR 
Sbjct: 632 ELNAYGNPRAGGIIAITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFKEDEVRS-AGRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GISL  GD+V+   +V    A                                  
Sbjct: 691 ARGVKGISLEGGDEVVGAEVVAQGAA---------------------------------- 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+E+G+GKRT   ++R+ +R GKGI     +  N  G 
Sbjct: 717 -------------------VLTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRN--GP 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE 899
            V V  V   DQI+++S +G + R+ V+EI +  RAT+GV +      +RV +V R + +
Sbjct: 756 AVGVMLVQSGDQIMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSD 815

Query: 900 SEIVDEAE 907
            E V+EA+
Sbjct: 816 DEGVEEAD 823


>gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143]
 gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143]
          Length = 827

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/894 (41%), Positives = 554/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKR+  I  +RDES+R+G R V
Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 307 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 367 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 416 ---------------FRLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               R+  IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 461 VKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 521 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 581 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 639 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 698 EGDTVVGASVITDQD--------------------------------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 713 --------EVLIITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKN--GPLAGLLTVKGD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +
Sbjct: 763 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEE 816


>gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1087]
          Length = 826

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+ IIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKARGGKGIKTANIT--DKNGPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
          Length = 899

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/916 (37%), Positives = 515/916 (56%), Gaps = 58/916 (6%)

Query: 1   MTEHII--SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MTE              I +V +   MQ SY+ YA+ VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MTETPPEGPGQTSAGGRIETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + KCAR+ GEVMG YHPHG++AIYD L R+AQ W LR  LI GQGNFG
Sbjct: 61  AMYDGGYRPDRGFSKCARVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S   DP AA RYTECR+   A  ++ D+ +DTVDF PNYDG  QEP +L +R+PN+LVNG
Sbjct: 121 SPGNDPAAAMRYTECRMAPLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGR 234
             GIAVGMATNIP HNL EV  G    +++PD   +     L+E ++GPDFP GA+I+GR
Sbjct: 181 SAGIAVGMATNIPPHNLREVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIVGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI+ AY TGRGSI  R V  +++ +  R  +V+TE+PY VN   + +KIA+L    ++ 
Sbjct: 241 EGIEQAYRTGRGSITQRAVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQ 300

Query: 295 DIADLR-DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD++ + S R G ++V+ LKR A A V+LN L ++T LQ+ FS NM+AL    P   +
Sbjct: 301 GIADVKDNTSSRTGQQLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLS 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           +   +  +V  + +V+ RRT + L KA + AH+  GL  A+  LD V+ +IR SP  + A
Sbjct: 361 IDQFISNWVEHQIDVIRRRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R+ L++                           + + E+Q  AIL+++L RL  L R  I
Sbjct: 421 RQGLIR--------------------------LLEIDEIQANAILDMQLRRLAALERQKI 454

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            + L  L + I +  DIL++ +R   I+  EL  +  +    RRT+I+    D+  ED I
Sbjct: 455 IDRLAELELIIADLEDILANVARQRQIVGDELDEIVAKYGDDRRTQIIAADGDLSMEDLI 514

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E++VV+++  GY KR   + YR Q+RGGKG  G  +R +D V      + H  +LFF+
Sbjct: 515 PDEELVVSITRGGYAKRTLANEYRTQKRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFT 574

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + LP  +  A+G  +  +LS    E I  ++   + E +    Y+V AT+
Sbjct: 575 TAGRVYRIKAYNLPEAARDAKGGHVAGLLSFQPDESIAQVLAIRDYEQA---PYLVLATR 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            G +++ +L D+    ++G IA+      DE++  E    E+DILL ++ GQ +RF    
Sbjct: 632 SGLIKKTRLGDYNSPRQAGVIAINFREDDDELIGAELVNSEDDILLVSRKGQAIRFRADD 691

Query: 713 IRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++   GR + GV G+    GD ++SM+++       +               I+    E
Sbjct: 692 NQLRPMGRATSGVTGMKFRDGDSLLSMSVIRAEHVAAE---------------IAAGLSE 736

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                 D +   + +E   Q   +KEQF+ T+++ GF KRT   ++R+ +R G GI+   
Sbjct: 737 ANEDTADVAAPVSGAESPDQ---VKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTMA 793

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV-NEIRIASRATKGVVIFSTAKDER 890
           ++  +  G LV  F V D D+++ ++  G ++R P+ ++ R   R+T+GV   S  K + 
Sbjct: 794 LANADR-GGLVGAFIVVDGDEVLSITASGQVVRSPINSDFRATGRSTQGVKFVSPKKGDS 852

Query: 891 VVSVERIRESEIVDEA 906
           V  V R  E+  VD+ 
Sbjct: 853 VAVVARSVEAREVDDE 868



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 35/294 (11%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       +   +V  +  G +K+  L  Y + R+ G   +     D+D +    
Sbjct: 609 ESIAQVLAIRDYEQAPYLVLATRSGLIKKTRLGDYNSPRQAGV-IAINFREDDDELIGAE 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRL---PIGSPQA-------------------RGKALI 619
           +V++   +L  S  G   + +       P+G   +                   R + + 
Sbjct: 668 LVNSEDDILLVSRKGQAIRFRADDNQLRPMGRATSGVTGMKFRDGDSLLSMSVIRAEHVA 727

Query: 620 NILSLNQGE------RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
             ++    E       +   +   E        +V   T  G  +R K+S++   +R G 
Sbjct: 728 AEIAAGLSEANEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYRLQSRGGL 787

Query: 673 -KIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
               M L + D   ++        +++L  T  GQ VR PI++     GR++ GV+ +S 
Sbjct: 788 GIKTMALANADRGGLVGAFIVVDGDEVLSITASGQVVRSPINSDFRATGRSTQGVKFVSP 847

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            KGD V    +    +A   +         A    I GD E     +  +  E 
Sbjct: 848 KKGDSV--AVVARSVEAREVDDEIVPGTEVADDVTIDGDGEHGAPSETTTEDES 899


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/851 (44%), Positives = 533/851 (62%), Gaps = 17/851 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 RAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTII 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL +  RL+ +I++EL+++K++ + PRRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 GELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L   D+V+S+ I     D        Y K              +       S   G
Sbjct: 722 RGINLNGDDKVVSLIIPRGDGDILTVTENGYGKRTEVTEYPTKSRATQGVISIKVSERNG 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +              I+ +++ G   RT   +  I  R+ +G+     ++   +  L  
Sbjct: 782 KV---VGAVQVATTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQR 838

Query: 844 VFPVNDNDQII 854
           V    ++D I+
Sbjct: 839 VAEPEEDDDIL 849


>gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A]
          Length = 858

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +                                              
Sbjct: 695 DNDGQDEVVGMICIKD-------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  LK + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 711 -------LKTESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+  MAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR    R++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNMG-RSATGVRGVSLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRT + ++    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+++++KG +IR  V  I    RAT GV +     D ++V+   ++  +  +     E
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 93/232 (40%), Gaps = 15/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQ--NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  +SL + +R+       + +       V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATG---VRGVSLREDDRVVGASRINDHQE------VLVITENGYGKRTEA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++GV+ + L    ++++ A+V   D +          + A         +E
Sbjct: 783 ATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNSDKE 834


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/899 (40%), Positives = 557/899 (61%), Gaps = 86/899 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++     E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+
Sbjct: 1   MNYMNNNEGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K Y KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  
Sbjct: 61  SPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K    +L D+ K+TVDF PN+DGS +EP V+ +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV+DG   +I++PD  +  LM  I+GPDFPT  +I+G++GI++AY TGR
Sbjct: 181 MATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIMGKSGIRSAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G +++R  + IE+    R +I+VTE+PYQVNKA ++E +AELV++KRI  I+D+RDESDR
Sbjct: 241 GKVIMRAKAEIEEEK-GRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+E+KR ++ +V+LNQLY++T +Q  F V M+AL   +P+   L  IL  ++ F+
Sbjct: 300 EGMRIVVEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNEPKVLNLKEILVNYIEFQ 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E++ RRTK+ L+KA  RAH+L GL IA+ ++DEV+ +IR S N + AR  LM +     
Sbjct: 360 KEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E Q +AIL++RL RLTGL RD I  E N L   IK
Sbjct: 415 ---------------------FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIK 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +L IIK+EL  +K++    R+T I   + ++  ED I  E++VVT+++ 
Sbjct: 454 YLRDILNNEDLVLKIIKEELHEIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNS 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    Y +Q+RGGKG   +  +++DFV  +FI STH+ +LFF+++G VYK K + 
Sbjct: 514 GYIKRISSDAYSSQKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYE 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L ++  E +  ++   +D       Y++  TK G +++  L+ F
Sbjct: 574 IPEAGRTAKGTNIVNLLPVDANEHVREVIALKKD---LEEGYLIIGTKQGLIKKTSLNQF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G IA+ L   DE+L V+    + +I++ T+ G  +RF    +R    RNS GV+
Sbjct: 631 KNIRKNGIIAINLKDEDELLKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPMG-RNSTGVK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ISL K D  +SM IV+  +                                        
Sbjct: 690 AISLRKDDVAVSMDIVVEDE---------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTV+E GFGKRT + ++ + NR+GKG+    V+  ++ G +V+  
Sbjct: 710 -------------YVLTVTENGFGKRTLASEYTLQNRNGKGLITHRVT--DKTGKIVSAR 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              D+D+++L++   T IR+ V+++ I +R+  GV +  T ++E+++++ +I   E  +
Sbjct: 755 VAKDSDELMLINSSNTAIRICVSDVSITNRSAMGVTLMRTYEEEKILAIAKISSDEDSE 813


>gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
 gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
          Length = 828

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/898 (41%), Positives = 537/898 (59%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++A+YD+L R+ QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG +AVI+NP+I++  +M+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PQNLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  ++  +V  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVDGVPRVLNLKEMMHYYVKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  LM+R          
Sbjct: 362 RRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E     + I     I
Sbjct: 412 ----------------FGLSEIQSKAILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LASPQKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L   E+I   +     E   +  Y+V AT +G V++  L DF    R
Sbjct: 576 RAARGRSLANIMELRPTEQIKAYINIRNFE---DPGYIVMATTNGIVKKTPLDDFSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE+L       ++ I+L       VRFP + IR    R ++GV+GI+L 
Sbjct: 633 TGIAAITIEEGDELLDARLTDGDHQIILAKSSAYAVRFPENEIRSMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 EGEKCISMVTTKRTD--------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  +IGALV +  VND+
Sbjct: 707 -------TALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KIGALVGLIDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I+++  G + R  V+++R+  R T GV +      +++ ++ R+ +S+   +++S
Sbjct: 758 DDLIIITTNGIVNRQHVSDVRMTGRNTSGVRLIRLMAGDKISALARVPKSDEEVDSDS 815


>gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 823

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 538/905 (59%), Gaps = 87/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P      ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLP---QGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R    R++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMG-RSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+                                            
Sbjct: 693 GINLREGDYVVGSGILKP------------------------------------------ 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 711 -----------EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +  E+E   
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 905 EAEST 909
           E E+ 
Sbjct: 818 EPETE 822


>gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
 gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
          Length = 817

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/898 (41%), Positives = 551/898 (61%), Gaps = 84/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  ++ G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANIT--DKNGNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI    E 
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEIDQVTED 816


>gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311]
 gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311]
          Length = 811

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/893 (41%), Positives = 550/893 (61%), Gaps = 84/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLIALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  ++ G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANIT--DKNGNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI 
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 103/258 (39%), Gaps = 19/258 (7%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   L + D +  V T  + +      +     RF ++     
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTE---- 415

Query: 717 AGRNSVGVRGISLA-----KGDQVIS--MAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             R S  +  + L      + D++ +    ++       D      + ++  +  +    
Sbjct: 416 --RQSQAILDMRLRRLTGLERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESK 473

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ 
Sbjct: 474 RKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQG 533

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886
           T V+  + +  +V+    + +D +  +++KG + R+   EI    R  KG   V +    
Sbjct: 534 TGVNDDDFVRDIVST---STHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLD 590

Query: 887 KDERVVSVERIRESEIVD 904
           + E + +V   +  E  D
Sbjct: 591 EGETIQTVINAKSDEASD 608


>gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 823

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 538/905 (59%), Gaps = 87/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++  P      ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLP---QGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R    R++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAMG-RSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+                                            
Sbjct: 693 GINLREGDYVVGSGILKP------------------------------------------ 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 711 -----------EDEVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +  E+E   
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 905 EAEST 909
           E E+ 
Sbjct: 818 EPETE 822


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 547/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 826

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/908 (41%), Positives = 548/908 (60%), Gaps = 106/908 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I +EM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M + G+   KKY KC
Sbjct: 3   NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEV+ KYHPHG+ A+YDAL R+AQD+++R  LI+GQGNFGS+DGDPPAA RYTE R
Sbjct: 63  AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL D+ K+TV F PN+D + QEP+VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+VD  + +++NP I ++ L+E ++GPDFPTG  I G  GI++ Y TGRG I IR   
Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIYGIEGIRDLYLTGRGLIRIRAKV 242

Query: 255 HIEKTSGDRE------------------QIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
            IE+ +  ++                  +I++TEIPYQVNKA ++EKIAELVREK+I  I
Sbjct: 243 KIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEGI 302

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            ++RDES+R+G RVV+ELK+G   +V+LN LY++T +++ F   ++A+   +P    L  
Sbjct: 303 TEIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQPRILNLKE 362

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L  F+  R++VV++RT + L KA  +AH+L+GL IAV NLDEV+ IIR S NPE A+ +
Sbjct: 363 ALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAKMK 422

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R                            L+E+Q +AIL++RL RLTGL R+ I  +
Sbjct: 423 LMNR--------------------------FPLTEIQAQAILDMRLQRLTGLEREKIIQD 456

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
             ++  EI+    IL S   +  IIK EL+ +K +    R+T IV    ++  ED I +E
Sbjct: 457 YETILKEIERLKAILESEELVRNIIKDELIEIKQKYGDERKTEIVTETKEINIEDLITQE 516

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMV+T++HLGY+KR  LS YR+Q+RGGKG + +    +D++  + I STH  ++FFS+ G
Sbjct: 517 DMVITLTHLGYIKRTSLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFG 576

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  KV+++P     ++GKA++N+L L +GE+ITT +   + E      Y++  TK G 
Sbjct: 577 RVYCLKVYQIPEAGRVSKGKAIVNLLPLQEGEKITTALVCKDIEEG----YLMMFTKKGF 632

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F  I + G IA+ L+  DE++SV   T  N +++ TK+G  VRF    +R  
Sbjct: 633 VKKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPM 692

Query: 717 AGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             R + GV GI  ++  D+V+S  +V                                  
Sbjct: 693 G-RTARGVIGIRFSEPEDEVVSADVVSEG------------------------------- 720

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                  F+LT++EKG GK+T   ++R+ +R G G++   +S  
Sbjct: 721 ----------------------SFVLTITEKGIGKKTPIEEYRLQHRGGTGVKNIKLSL- 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V+   V ++D+II+ S    +IR+ V++IR   RAT GV +   + D+ VVS+ 
Sbjct: 758 -KTGNVVSSLQVKEDDEIIICSSS-KMIRLKVSQIRPQGRATTGVRLIDLSADDTVVSMG 815

Query: 896 RIRESEIV 903
           RI E E  
Sbjct: 816 RILEGEDD 823


>gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066]
 gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066]
 gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03]
          Length = 811

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/893 (41%), Positives = 550/893 (61%), Gaps = 84/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S NN ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  ++ G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANIT--DKNGNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI 
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 102/258 (39%), Gaps = 19/258 (7%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   L + D +  V T  + +      +     RF ++     
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTE---- 415

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R S  +  + L +   +    I    D            ++   R+I+   EE+   K
Sbjct: 416 --RQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESK 473

Query: 777 ND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                      + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ 
Sbjct: 474 RKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGVQG 533

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886
           T V+  + +  +V+    + +D +  +++KG + R+   EI    R  KG   V +    
Sbjct: 534 TGVNDDDFVRDIVST---STHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLD 590

Query: 887 KDERVVSVERIRESEIVD 904
           + E + +V   +  E  D
Sbjct: 591 EGETIQTVINAKSDEASD 608


>gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
 gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
          Length = 856

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/914 (37%), Positives = 522/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     + +    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDQ----NGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNP+   +      ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE  SG+R+ IV+TE+PYQVN   M+  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIE-ESGNRQTIVITELPYQVNPDNMISNIAESVANGKIAGI 295

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DES DR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 AKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L                             + + +VQ  AIL ++L RL  L R  I +
Sbjct: 416 GLKT--------------------------LLAVDDVQADAILAMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +  DIL+   R   I+  EL  + ++    RRT+IV    D+ DED I R
Sbjct: 450 ELAEIEEIIADLKDILAREERQRQIVHDELAEIVEKYGDERRTQIVAASGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     +S  +  Y+V ATK G
Sbjct: 570 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATKQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++      + +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++SM++V                                 
Sbjct: 687 RPMGRATAGVKGMRFRGDDQLLSMSVVHDGG----------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 718 ------------------------YLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V++ D+I  ++  G +IR  VN+IR +SRAT GV + + + D  ++++
Sbjct: 754 --KRGKLIGAIAVDEEDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLSNDVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           +R  E    ++A++
Sbjct: 812 DRNVEDHGEEDAQA 825


>gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 849

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/900 (45%), Positives = 595/900 (66%), Gaps = 53/900 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D    K I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MKDTEIPKD----KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+
Sbjct: 57  YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG G
Sbjct: 117 DGDPAAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGE++DG +A+I+N DI +  LM+ I GPDFPTG VI+G+  IK  
Sbjct: 177 GIAVGMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IRG   +E     RE++V+T +PYQVNK+ + E+IA+LVREK+I  I D+R
Sbjct: 237 YNVGRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RV I+L+ G   + I   LY+ TS++S F  N +A+   KP+   L   L  
Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTN 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+VV+++TK+ L KA DRAH+L+GL+++V NLD++++IIR S  P+ A++ L+  
Sbjct: 357 FLTFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNT 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  +    LI L++D            LS+ Q  AILELRL +LT LG ++I  E+  L
Sbjct: 417 KWKINKSLKLISLVEDK----KEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK    I++S+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I +E +++
Sbjct: 473 ADLIKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVII 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  LS  + Q+RGGKG+SG+  RDED V     V+THTSVLFFS+ G VYK
Sbjct: 533 TVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYK 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K W++P GS  ++GK+L NIL L   + I++IMPFP++ES   NL +VFAT  G VR+N
Sbjct: 593 IKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKN 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF  IN +GKIA+KLD  D+I+ VE C  + D++L+TK G+C+RF    +R+F GR+
Sbjct: 653 SLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRS 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G++GI L+  D+++S++I        D                               
Sbjct: 713 SKGIKGIELSPNDEIVSLSITNKEKIKKDT------------------------------ 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                        K   +F+L+++E G+GK+T + ++R++NR GKGI     S  N  G+
Sbjct: 743 -------------KSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GS 787

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + + FPV + D +++ ++KG +IRV V EIR A R T+GV I   + DE+VVS  +I ++
Sbjct: 788 ICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDDN 847



 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 17/249 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+  I   L+   E    ET  +E+ I+  T  G   R  +S+++    R   G  GI
Sbjct: 507 PRRTKIIDAILNYDIE----ETIQKESVIITVTLQGYIKRGALSSVKQ-QKRGGKGKSGI 561

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-----DSSV 781
           +    D V+ ++++  H    +      +  + A +      T +  SL N     +   
Sbjct: 562 TTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLFNILPLKNHQS 621

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +I     +E   K   I+  + KG  ++ S  DF   N +GK   A  +   ++   +
Sbjct: 622 ISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIKLDPNDK---I 676

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRES 900
           V V    D+  ++L +  G  IR    ++RI   R++KG+     + ++ +VS+    + 
Sbjct: 677 VGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKE 736

Query: 901 EIVDEAEST 909
           +I  + +S 
Sbjct: 737 KIKKDTKSD 745


>gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183]
 gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183]
          Length = 839

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/916 (37%), Positives = 505/916 (55%), Gaps = 92/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE + +      + I  V I  E+Q SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTE-VTTGGSGPGERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KCAR+ G+VMG YHPHG++AIYD L R+AQ W++R  L++G GNFGS 
Sbjct: 60  YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  +L D+ K+TVDF PNYDG   EP VL AR+PN+LVNG  
Sbjct: 120 GNDPAAAMRYTECRLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    +DN  +  + L+    E I+GPDFPT A+I+GR G
Sbjct: 180 GIAVGMATNIPPHNLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIVGRKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE+    R  +VVTE+PYQVN   +  KIAELV+E ++  I
Sbjct: 240 IEDAYRTGRGSITMRAVVEIEEIQ-GRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGI 298

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE+  R G R+VI LK+ A A V+LN LY++T LQ  F  NM+AL    P    L 
Sbjct: 299 ADVRDETSGRTGQRLVIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +V  + +V+VRRT++LL KA +RAH+L  L  A+  ++EV+ +IR S + + A+ 
Sbjct: 359 QFIRYWVDHQIDVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + EVQ +AIL+++L +L  L R  I +
Sbjct: 419 GLMA--------------------------LLQIDEVQAQAILDMQLRKLAALERQAITD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  EI +  +IL+S  R   I+++EL  + +     RRT+IV    D+  ED I  
Sbjct: 453 EYERLMAEIADFNEILASPERQRRIVREELEPIVERYGDERRTQIVPFDGDVSYEDLIPE 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YR Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ 
Sbjct: 513 EDIVVTITRGGYAKRTRVDAYREQKRGGKGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   +RG+ + N+L+    E I  ++   + + +    Y+V AT+ G
Sbjct: 573 GRVYRAKAYELPEGGRDSRGQHVANMLAFQPEEHIAEVLDLRDYDVA---PYLVLATRQG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L DF      G IA+ L   DE+++       +D+LL     Q +RF     ++
Sbjct: 630 KVKKTALKDFDSPRTGGIIAINLAEGDEVIAARLVFPTDDLLLVGTNAQAIRFHADDEQL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+    G  ++ M ++   D D                           
Sbjct: 690 RPMGRATSGVIGMRFDTG-HLLDMHVIRDGDED--------------------------- 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +E G+ KRT    + +  R GKG+    + +
Sbjct: 722 -------------------------VLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKIVQ 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V   D +  ++  G +IR    EI+ + R T GV + + A+ + VV++
Sbjct: 757 A--RGKLVGALMVRPEDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNLAEGDSVVAI 814

Query: 895 ERIRESEIVDEAESTE 910
            R  ES + +E E+ +
Sbjct: 815 ARNVESSMEEEPEAGD 830


>gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827]
 gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/916 (38%), Positives = 512/916 (55%), Gaps = 91/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +              +  EMQNSY+ YA++VI+GRA+PD+RDGLKPVH R+L+ M
Sbjct: 1   MSETTLPPIGGGSDRTEPRDLQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                   + Y KCAR+ G+VMG YHPHG++AIYDAL R+AQ W++R  LI+GQGNFGS 
Sbjct: 61  FDSRFLPERSYNKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQ 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  +L D+ +DTVDFR NYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDPAAAMRYTECRLTPLAMRMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  +DNP+   +  +E     I+GPDFPT   ILG  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEGVVWALDNPEASDEETLEAMIARIKGPDFPTYGQILGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +R V  +++ +  R  +VV+E+PYQVN   ++E IA LVR+++I  I
Sbjct: 241 IEDAYRTGRGSVKMRAVVEMDEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGI 300

Query: 297 ADLRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ DES+R  G R+V+ +KR A A V+LN LY++T LQ  F VNM++L    P    L 
Sbjct: 301 SNIADESNRRSGMRIVVTVKRDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + EV+VRRTK+ L KA +RAHV  GL  A+  LD V+ +IR S   E+AR 
Sbjct: 361 QMIRHYVKHQIEVIVRRTKFRLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARS 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + EVQ+ AILE++L RL  L R  I +
Sbjct: 421 GLME--------------------------LLSVDEVQSNAILEMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  + ++I +  DIL+   R   I++ ELL + D+    RRT+IV    D+  ED I  
Sbjct: 455 QLAEIELQIADLKDILAKPERQRAIVRGELLEIVDKHGDDRRTKIVPFDGDVSMEDLIAV 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVQHFFVCSTHDWILFFTNK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    E I  ++     E++    Y+V AT++G
Sbjct: 575 GRVYRTKAYDLPEASRNARGQHVANLLAFQPDEEIAQVIQIKNYEAA---PYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KLSDF      G I + L   DE++      + +D+LL +K GQ +RF  S   +
Sbjct: 632 LVKKSKLSDFDSNRSGGLIGINLREEDELVGAVLTGEGDDLLLVSKDGQSIRFHSSDDVL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++SM +V                                 
Sbjct: 692 RPMGRATSGVQGMRFNSDDELLSMGVV--------------------------------- 718

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                +  F+L  ++ G+ KRT   D+ +  R GKG+      +
Sbjct: 719 --------------------QEGLFVLVATDGGYAKRTPIEDYPVQGRGGKGVLTIQHDR 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+  D++  ++  G +IR    EIR A R TKGV + +  +   +++V
Sbjct: 759 R--RGRLVGALIVDVEDELYAITSAGGVIRTSAKEIRKAGRQTKGVRLMNLGEKSTLIAV 816

Query: 895 ERIRESEIVDEAESTE 910
            R    E  D +   E
Sbjct: 817 ARNA-DEPADVSTGEE 831


>gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132]
 gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132]
          Length = 837

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/899 (41%), Positives = 550/899 (61%), Gaps = 85/899 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  + + E    I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM
Sbjct: 1   MAEN--NENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  N+ Y K ARI GEV+GKYHPHG++++YD + RMAQDWSLR  L++GQGNFGSV
Sbjct: 59  SELGVYHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL++ A  +L D+ K+TVDFR N+D S QEP VL +R PN+L+NG  
Sbjct: 119 DGDSPAAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV +G  A IDNP+I ++ LM  I+ PDFPTG +I G  G+K A
Sbjct: 179 GIAVGMATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTGGIIYGYGGVKAA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG +VIR V++ E +   +EQIVVTEIPY VNKAAM+EK AELV +K+I  I+ +R
Sbjct: 239 FETGRGRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+V +LK+ A  +V+LN LY+YT LQ+ FS+N VAL   KPE   L  +++ 
Sbjct: 299 DESDRQGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALVHGKPETLNLKQLIEH 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R +V+ RRT+Y L +A  RAH+L GL IA+ +LDEV+ +IR S +P+ AR  LM++
Sbjct: 359 YVKHRLDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEK 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q RAIL++RL RLTGL RD I  E   +
Sbjct: 419 --------------------------FALSEIQARAILDMRLQRLTGLERDKITEEYKQI 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E   IL+S  +   +IK +LL +K +    RR++I     +   ED I  ++M+V
Sbjct: 453 KALIEELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNIEDMIPDDEMLV 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  LS Y++Q RGG G  GV  +D+D+   LF+ + H  +LFF+  G +Y 
Sbjct: 513 TVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMATNHNYLLFFTEKGRLYW 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ N++++   ++I  ++      DE    N Y+V  T++G V+
Sbjct: 573 LRVFEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVK 632

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +  ++G IA+ ++  D+++ V      + I++    G+ VRF  S IR    
Sbjct: 633 KTLLEMYSRPRQNGIIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPMG- 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+GISLA+ D+ I M  V   DA                                
Sbjct: 692 RGATGVKGISLAEDDKAIGMICVNRPDAQ------------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L VSEKG+GKR+   D+RI++R  KG++  ++S+  ++
Sbjct: 721 ---------------------LLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSE--KV 757

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LVA+  V D D +++++ +G  IR+ V+++R+  R T+GV +      + + S+ RI
Sbjct: 758 GNLVAIKEVTDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASITRI 816


>gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 878

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
          Length = 819

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/899 (40%), Positives = 552/899 (61%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +IDN D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNK+ ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   + +   +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 DDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+ L ++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 EVVLGDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I++E    E
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDIIEEEILNE 815


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 547/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKGNQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
 gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
          Length = 864

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/854 (43%), Positives = 529/854 (61%), Gaps = 18/854 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 14  DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 74  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 134 YTEIRMARIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+  C+A++ NP+  +D L+EII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 194 IPPHNLNEVIAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTVGVREGYRTGRGRVV 253

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E    G+R+ ++V E+PYQVNK   +EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 254 MRGRTHVEDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGM 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 314 RVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P  A+RELM R+W +  ++
Sbjct: 374 VTRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVE 433

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 434 EMLKRAAMEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEI 493

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  II +EL ++ ++    RR+ IV    D+  ED I  +D+VV
Sbjct: 494 MDVIADLLDILARSERVTQIIVEELTAILNQFGDKRRSEIVHNAQDLSLEDLITPQDVVV 553

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 554 TLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGRVYW 613

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L  GE+I  I+P  E +    N +V  AT  G V++ 
Sbjct: 614 LKVYEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFDE---NHFVFMATAKGTVKKT 670

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F    RSG IA+ LD  D ++  E     NDI+L +  G+ V F    +R    R 
Sbjct: 671 ALTEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPMG-RA 729

Query: 721 SVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKND 778
           + GVRG+ L    QVIS+ I  +            Y K         SG   +       
Sbjct: 730 ARGVRGMKLQGKQQVISLLIADNDKQTVLVATENGYGKRTVLADFRHSGRGTQGVKAIAT 789

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S   G +   R   L   +  I+ ++  G   RT   + R   R+ +G+   ++ +  ++
Sbjct: 790 SERNGIVVGAR---LVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKL 846

Query: 839 GALVAVFPVNDNDQ 852
             L  V   +D+++
Sbjct: 847 SGLEKVVETDDDNE 860


>gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 848

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/897 (39%), Positives = 541/897 (60%), Gaps = 84/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +EQIVVTE+PY VNKA ++E+I+EL R+K+I  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A++   P+  +L  IL A++A + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLIN---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 413 ----------------GYALSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT + V  +L +EDED I  ED++VT+++ GY+
Sbjct: 457 ILAHEERVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV    ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVATGEFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I T++     E+  +N Y+ F T+ G V+R  + +F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEGNEKIQTVINVR-GEAGESNDYLFFVTRLGVVKRTAVKEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+      +I++ T  G  V F  + +RV   R++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVMG-RSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+   ++                                               
Sbjct: 695 LREGDLVVGSDVL----------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+  +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+
Sbjct: 708 ------EKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVS 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             + I++ + +G +IR  V+ +    RAT GV +     + +V ++ ++   E++++
Sbjct: 760 GQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 15/248 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D +  V+ LG VKR  +  +   R    G   + + D+D V  + I     +++  +  G
Sbjct: 613 DYLFFVTRLGVVKRTAVKEFANIR--TNGLKALTLHDDDEVLSVQITDGTQNIIIATHNG 670

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +        + +    A G   +  + L +G+ +         +    +  V+  T+ G 
Sbjct: 671 YSVSFAENDVRVMGRSAAG---VRGIRLREGDLVVG------SDVLEKDHNVLIITEKGY 721

Query: 657 VRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            ++  +S++    R GK    A   +    +  +   + + DI++TT  G  +RF +   
Sbjct: 722 GKQTPVSEYPIKGRGGKGIKTANITEKNGPLAGMTIVSGQEDIMVTTTQGVMIRFNV-DS 780

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR ++GVR I L    +V ++A V H +   D             + I   +E + 
Sbjct: 781 VSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLEDVSRETSDKAPLDEQQIDQVSELLD 840

Query: 774 SLKNDSSV 781
             ++D+  
Sbjct: 841 RAQDDTDK 848


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 547/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 878

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + NE   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
 gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
 gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 532/889 (59%), Gaps = 89/889 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+IT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM  MG   N+ Y K A
Sbjct: 6   VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK HPHG++A+YDALARMAQ WS+R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ KDTVDFR N+DGS++EPVVL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ D    +I++P+  ++ LM+II GPDFPT  +ILG  GI  AY+TGRG I +R  +H
Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+       IVVTE+PYQVNKA + E+IAELV++++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F +NM+AL  +G +P   TL  +L+ ++  R+EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR+RAH+L GL IA+ NLD V++ IR S   E+AR  LM               
Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSN------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q +AIL+L+L RL  L R  I +E   +   I E  DIL++
Sbjct: 413 -------------FSLTERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +I+Q+L  +K++   PRRTRI+  +  ++ DED I    +++T++  GY+KR  
Sbjct: 460 PRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR QRRGG+G  G++ R++D V  L   ++  ++LFF+  G VY+ K   +P  S  
Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE++T+++   E ++     Y+V AT  G ++R +L ++ Q+  +G
Sbjct: 580 AKGLPLVNLISLEPGEQVTSMLAVREFDAE----YLVMATVRGKIKRTQLREYSQVRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D +  V       DILLTT  GQ +RF  S +R    R + GV GI+LA G
Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPMG-RPATGVIGINLADG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM                                                     +
Sbjct: 695 DRVVSM-----------------------------------------------------D 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +   +L V+ +G GKRT+  ++ +  R+  G+    +   N++  + A   V ++  
Sbjct: 702 LAEEGADLLVVTARGIGKRTALSEYPVKGRATGGVITIKL--RNDLDEVAAAAVVREHSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  ++  G ++R   +EI    RAT+GV I + A  +RV ++      E
Sbjct: 760 LTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAALSVEDPEE 808



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 15/224 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             + +V  +  G +KR  L  Y +Q R   G   + + + D +  + +   H  +L  ++
Sbjct: 607 DAEYLVMATVRGKIKRTQLREY-SQVRS-NGLIAIGLEEGDVLGWVRVSHGHEDILLTTA 664

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + +   +      A G   +  ++L  G+R+ ++      + +     ++  T  
Sbjct: 665 RGQTLRFEQSEVRPMGRPATG---VIGINLADGDRVVSM------DLAEEGADLLVVTAR 715

Query: 655 GNVRRNKLSDFIQINRS--GKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  LS++    R+  G I +KL +  DE+ +     + + +   T  G  +R   S
Sbjct: 716 GIGKRTALSEYPVKGRATGGVITIKLRNDLDEVAAAAVVREHSLLTFITTGGMVLRTSAS 775

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I     R + GV  +++A GD+V ++++    +         +
Sbjct: 776 EISRLG-RATQGVTIVNVATGDRVAALSVEDPEENGNGSTPTLI 818



 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 98/259 (37%), Gaps = 25/259 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RR +        R+  +     + D + +V    ++      ++  +  R  + +     
Sbjct: 363 RRTEFDLARARERAHILEGLKIALDNLDAVIQTIRD------SRTAESARNNLMSNFSLT 416

Query: 718 GRNSVGVRGISLA----------KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            R +  +  + L           + +    + ++   +         +  +      +  
Sbjct: 417 ERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKE 476

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              +    +    V G +S+E   +L    + ++T++++G+ KR     +R   R G+GI
Sbjct: 477 KYGDPRRTRIIPDVTGEVSDE---DLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGI 533

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
           +     + + +  L      N  D ++  +D+G + ++  +E+  +SR  KG   V + S
Sbjct: 534 KGMLTREQDIVRHL---LTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLIS 590

Query: 885 TAKDERVVSVERIRESEIV 903
               E+V S+  +RE +  
Sbjct: 591 LEPGEQVTSMLAVREFDAE 609


>gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/857 (43%), Positives = 537/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/877 (42%), Positives = 535/877 (61%), Gaps = 49/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 32  SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 91

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 92  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 151

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 152 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 211

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R +
Sbjct: 212 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 271

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 272 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 331

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 332 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 391

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 392 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 451

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 452 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 511

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 512 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 571

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 572 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 631

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 632 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYAE---DKYIIMATSNGTVKKTALTAY 688

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 689 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNPVL 748

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRGI L +G +V+S+ +      +L    +   +   +
Sbjct: 749 DEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTEL 808

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
               ++ R   G      S +N + V                  I+ +S+KG   RT + 
Sbjct: 809 SEYPSKSRATKGVVSIKVSERNGAVV--------GAVQVGGNDEIMLISDKGTLVRTPAN 860

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              I  R+ +G+     +   ++  L  +  +  ++ 
Sbjct: 861 GVSIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDED 897



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 109/273 (39%), Gaps = 34/273 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  ++  +  G VK+  L+ Y   R    G   V ++D D +  + 
Sbjct: 654 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPR--ANGIIAVNLKDGDQLIGVD 711

Query: 582 IVSTHTSVLFFSSLGFVYKEK----VWRLPIGS------------------PQARGKALI 619
           I +    ++ FS+ G V + K    V  L                      P  RG   +
Sbjct: 712 ITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNPVLDEEGNPQINFKGVRPMGRGATGV 771

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMK 677
             + L +G+++ +++          +  ++  T++G  +R +LS++   +R+  G +++K
Sbjct: 772 RGIKLEEGQKVVSLIV------PKGDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIK 825

Query: 678 LDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +      ++        ++I+L +  G  VR P + + +   RN+ GV  I  A  ++V+
Sbjct: 826 VSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIG-RNTQGVTIIRTASDEKVV 884

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +  +     D DE       M     +  G++
Sbjct: 885 GLQRIDEIQGDEDEVELDENGMPIVPVVAEGNS 917


>gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
 gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/913 (40%), Positives = 549/913 (60%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  LI+GQGNFGSV
Sbjct: 57  LGIGNTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL K+TVD   N+D + QEP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNLGEV+DGC A IDNPDID D LM+ I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIYGIQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  + IE +S + ++IV+TEIPY VNK  ++  IA+L +E R+  IA++ 
Sbjct: 237 YETGRGRIVVRATAEIE-SSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+V+++KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DESGRQGMRIVVDVKRDANANVLLNKLFKLTALQSSFSVNCIALVNGRPRLLSLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  + + NE N L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLSQLTGLRLEQLHNEFNEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL+       ++K EL  VK++    RRT I     +   ED    + +V+
Sbjct: 450 MKTIDYLNQILNDPELCKKVMKDELNEVKEKYGDARRTMIKPDDHEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KR PLS +R Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHLGYIKRTPLSEFREQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++   +++   +      D    NN YVVFATK+G V+
Sbjct: 570 LKCYEIPEGDRNSKGRAIQNLLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR    
Sbjct: 630 KTCLEAYSRPRANGVIAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTMG- 688

Query: 719 RNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRG+ L +GD  V+ M +V   + +                              
Sbjct: 689 RTSTGVRGMRLDEGDDAVVGMIVVNDPEKE------------------------------ 718

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE+G+GKR+   D+R++ R GKG++  +++  ++
Sbjct: 719 ---------------------TVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNIT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVAIKNVTDDNDLMIINQSGIVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEASVEEE 828



 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 107/263 (40%), Gaps = 17/263 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + + H  ++  
Sbjct: 613 FINNHYVVFATKNGTVKKTCLEAYSRPR--ANGVIAINIVEGDEVVDVRLTNGHNELIIA 670

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     +      + G  +  +      + +  ++   + E       V+  +
Sbjct: 671 NRNGRAVRFDENEIRTMGRTSTG--VRGMRLDEGDDAVVGMIVVNDPEKE----TVMVVS 724

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+    R GK    L+  D+   +++++  T +ND+++  + G  +R  
Sbjct: 725 EQGYGKRSDVLDYRVTKRGGKGVKTLNITDKTGRLVAIKNVTDDNDLMIINQSGIVIRLA 784

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRL 764
           ++  RV   R + GVR I+LAK + VI+     M+  L A  + + R  + K        
Sbjct: 785 VADCRVMG-RATQGVRLINLAKKNDVIASVCKVMSSELEASVEEESRSAWAKKSEEIEND 843

Query: 765 ISGDTEEITSLKNDSSVEGNISE 787
             G      + + ++ +    SE
Sbjct: 844 TVGAKTAEEAAEAEAHLADEASE 866


>gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
 gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/855 (44%), Positives = 541/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSWN  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA+ D V+S+ +      +L    +   +    +    + R   G      + +N 
Sbjct: 722 RGIKLAESDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S V     E+  Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 SVVGAVQVEDTDQ--------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    D++++
Sbjct: 834 VGLQRVAEPVDDEEL 848


>gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/857 (43%), Positives = 538/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/857 (43%), Positives = 537/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 548/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
 gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
          Length = 802

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/889 (42%), Positives = 553/889 (62%), Gaps = 88/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +EKGI  V+I D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MGV  NK Y
Sbjct: 2   KEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG++A+YD L RMAQD+S+R  L++GQGNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVDF PNYDGS +EPVVL  R PN+L+NG  GIAVGMATNIP
Sbjct: 122 EVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  V +IDNP    + ++  I+GPDFPT  +I G+  I  AY TG+G I +R
Sbjct: 182 PHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E T+  +E +VVTE+PYQVNKA ++EKIA L R+K+I  I DLRDESDR G R+V
Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG +AD+I+NQLY++T ++  + +N+V +   KP+  TL  +L+ F+  R+ VV+R
Sbjct: 302 IELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+LL KA DR H+L GL  AV N+DEVV +I+ S N   A+ +LM R           
Sbjct: 362 RTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q +AIL++RL RLTGL  + +RNE       I+    IL
Sbjct: 411 ---------------FELSDKQAQAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++S L+GIIK+EL+ +K++    RRT+IV    ++  ED I  +++VVT+S+ G++KR 
Sbjct: 456 NNKSVLMGIIKEELIDIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +++Q+RGGKG++G     EDF+ D+ + + H++++FF++ G ++  KV+ LP  + 
Sbjct: 516 PLSNFKSQKRGGKGKTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELAR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GK + N++SL++ E++  ++   E +    + Y+   TK G V++  L D     RS
Sbjct: 576 DAKGKYIANLISLDKDEKVAAMISTKEFD---RDRYIFMCTKEGIVKKTSL-DAFSSGRS 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+KL   DEI+     ++ + I ++T+ G+C++F  S +R    RN+ GV+GI+L K
Sbjct: 632 GIIAIKLRDGDEIVDASLISKNDSIFISTRKGKCIQFNSSEVRNMG-RNATGVKGITLTK 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM  V                                                  
Sbjct: 691 DDKVVSMEAV-------------------------------------------------- 700

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                +  ILTV+ KGFGK +   D+RI +R GKGI+ + V++    G +V    V   D
Sbjct: 701 ---KGDPLILTVTTKGFGKSSLITDYRIQSRGGKGIKLSKVTER--TGEIVGARQVKLED 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            ++L+S    +IR+ V++I I  R T+GV +     D+ ++S + IRE 
Sbjct: 756 DVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGL--DDEIISFDVIRED 802



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--K 794
           S  I +      DE +  + +    +R    + +         +  GN+ E+  +++   
Sbjct: 488 SEEINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGKTGAGNVKEDFIKDILVT 547

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDND 851
                ++  + KG       Y+     R  KG        + K  ++ A+++    + + 
Sbjct: 548 TNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLISLDKDEKVAAMISTKEFDRDR 607

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            I + + +G + +  ++    + R   G++       + +V    I +++ +
Sbjct: 608 YIFMCTKEGIVKKTSLDAFS-SGR--SGIIAIKLRDGDEIVDASLISKNDSI 656


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 548/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
 gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/854 (44%), Positives = 538/854 (62%), Gaps = 25/854 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREELELIRDQFGDARRTEITANSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGEDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQI 853
            L  V    D++++
Sbjct: 835 GLQRVAEPVDDEEL 848


>gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 538/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 546/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A
 gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 878

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
 gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
          Length = 899

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/905 (41%), Positives = 547/905 (60%), Gaps = 91/905 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   DENIFDKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP+VL ARYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HN+ E++   V +IDN     +  ++ L+EI++GPDFPTGA+ILG  GI+ AY TG
Sbjct: 182 NIPPHNMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTRGIEEAYRTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R V++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K+I  I +LRDESD
Sbjct: 242 RGKIRVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESD 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+ IEL+R  +A+VILNQLY++T LQ  F V M+AL   +P+  TL+ +L  ++  
Sbjct: 302 REGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNQPKVLTLLEMLSYYLKH 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +EEVV RR  Y LNKA++RAH+L GL  A+  +DEV+ IIR S N   A+  L++R    
Sbjct: 362 QEEVVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIER---- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                     ++Q +AI+++RL  LTGL R+ +++E   L   I
Sbjct: 418 ----------------------FEFDDIQAQAIIDMRLRALTGLEREKLQDEFAELQRRI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E   IL+    LLG+IK E+  + D+    RRT I     D+  ED I  E+ V+ ++ 
Sbjct: 456 AEFEAILADEKLLLGVIKGEIQVINDKFGDERRTSIGFDEFDISMEDLIPDENTVIAMTR 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           LGY+KR+ +  +++Q RGGKG  G+   DEDF+ DLF+ +TH  ++FF++ G VY+ K +
Sbjct: 516 LGYIKRMTIDNFKSQHRGGKGIKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAY 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  ARG A++N+L L   ERIT I+   E +   +N Y+  ATK G V++ K+ +
Sbjct: 576 EIPESSRTARGTAIVNLLQLLPEERITAIIALKEYK---DNRYLFMATKDGIVKKTKIKE 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I ++G  A+ L   DE++ V+T   + DI+L TK G C+RF    +R   GR S+GV
Sbjct: 633 YQNIRKTGLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDVR-NTGRASMGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G++L  GD+V++M I                                            
Sbjct: 692 IGMNLTNGDEVVAMQI-------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      + +++LTVSE G GK T   +F    R GKG++   +++  + G +V  
Sbjct: 708 ---------HTQGKYLLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITE--KTGNVVGA 756

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902
             VN+  ++++++++G +IR+ VN I I  R T GV + +    KD RV S+ +++ES +
Sbjct: 757 KAVNEEHEVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGKDIRVASLAKVKESSM 816

Query: 903 VDEAE 907
             E +
Sbjct: 817 NSEED 821


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/877 (42%), Positives = 535/877 (61%), Gaps = 49/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 32  SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 91

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 92  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 151

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 152 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 211

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R +
Sbjct: 212 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 271

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 272 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 331

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 332 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 391

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 392 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 451

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 452 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 511

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 512 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 571

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 572 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 631

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 632 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYAE---DKYIIMATSNGTVKKTALTAY 688

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 689 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVL 748

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRGI L +G +V+S+ +      +L    +   +   +
Sbjct: 749 DEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTEL 808

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
               ++ R   G      S +N + V                  I+ +S+KG   RT + 
Sbjct: 809 SEYPSKSRATKGVVSIKVSERNGAVV--------GAVQVGGNDEIMLISDKGTLVRTPAN 860

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              I  R+ +G+     +   ++  L  +  +  ++ 
Sbjct: 861 GVSIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDED 897



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 109/273 (39%), Gaps = 34/273 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  ++  +  G VK+  L+ Y   R    G   V ++D D +  + 
Sbjct: 654 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPR--ANGIIAVNLKDGDQLIGVD 711

Query: 582 IVSTHTSVLFFSSLGFVYKEK----VWRLPIGS------------------PQARGKALI 619
           I +    ++ FS+ G V + K    V  L                      P  RG   +
Sbjct: 712 ITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVLDEEGNPQINFKGVRPMGRGATGV 771

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMK 677
             + L +G+++ +++          +  ++  T++G  +R +LS++   +R+  G +++K
Sbjct: 772 RGIKLEEGQKVVSLIV------PKGDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIK 825

Query: 678 LDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +      ++        ++I+L +  G  VR P + + +   RN+ GV  I  A  ++V+
Sbjct: 826 VSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIG-RNTQGVTIIRTASDEKVV 884

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +  +     D DE       M     +  GD+
Sbjct: 885 GLQRIDEIQGDEDEVELDENGMPIVPVVAEGDS 917


>gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467]
          Length = 833

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 ISIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+    +  +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISV--EGKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
 gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
          Length = 823

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/889 (41%), Positives = 543/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I SV++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEAKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     ++DNPD+    LME++ GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   I++ S  +E+I++TE+PY VNKA ++E+I+EL R+KRI  I  LRDES R+G R
Sbjct: 243 VRGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VILN +Y+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EV+
Sbjct: 303 IVIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL R+ I NE   L   I +  D
Sbjct: 414 -----------------FDFSDRQAQAILDMRLRRLTGLEREKIENEYQELLAFIADLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK+ELL +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVVQIIKEELLDLGKRFGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV  + +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P 
Sbjct: 517 KRVANTEFRAQRRGGRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  ERI  I+     E++    Y+ F TK G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSSERIQAIIAVKNHEAA--EQYLFFTTKLGVVKRTDVQAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L  +DE+++V      + I++ T  G  V F  S +R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDMG-RAAAGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  AI+                                               
Sbjct: 694 LREGDYVVGTAILTP--------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L ++E G+GKRT+S ++ +  R GKGI+  +++  N  G L  +  V+
Sbjct: 709 --------ESEVLVITENGYGKRTASSEYPVKGRGGKGIKTANITPKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + I++++DKG +IR  V  +    RAT GV +     + +VV++  +
Sbjct: 759 GEEDILVITDKGVIIRFNVATVSQTGRATLGVRLMKMENEAKVVTMATV 807


>gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 878

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
 gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
          Length = 887

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/863 (44%), Positives = 545/863 (63%), Gaps = 38/863 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E      + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREY---TEDKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
            +   +G IA+ L   D ++ V+    + DI+L +  G+ VRF  S +            
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVR 722

Query: 717 -AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDT 769
             GR + GVRGI LA+GD+VIS+ +      VL    +   +   +    A+ R   G  
Sbjct: 723 GMGRTAAGVRGIKLAEGDKVISLIVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQGVV 782

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
               S +N S V    +E+            + ++  G   RT   +     R+ +G+  
Sbjct: 783 SIKVSERNGSVVGAIQAED--------GDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTL 834

Query: 830 TDVSKINEIGALVAVFPVNDNDQ 852
               +  +   +V +  +++ D+
Sbjct: 835 IRTIEGEK---VVGLQRIDEPDE 854


>gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 878

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 538/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
 gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
          Length = 855

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 562/905 (62%), Gaps = 87/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A+                                        
Sbjct: 695 DEDGGDEVIGMICIKDPEAES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE
Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821

Query: 906 AESTE 910
             +T+
Sbjct: 822 NSNTD 826



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 115/255 (45%), Gaps = 13/255 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++  
Sbjct: 608 FINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDKVIEVRMTNGDNEIIIA 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     + +    A G      L  + G+ +  ++   + E+      ++  +
Sbjct: 666 NRNGRAIRFHESAVRVMGRTATGVR-GMTLDEDGGDEVIGMICIKDPEAES----IMVVS 720

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+ + NR GK    L+  D+   ++++++ T END+++  K G  +R  
Sbjct: 721 EQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLK 780

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMA--IVLHADADYDERICYMKHMSAQRRLISG 767
           ++ +R+   R + GVR I+L K +  I     +    +   +     +++++      + 
Sbjct: 781 VAEVRIMG-RATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTT 839

Query: 768 DTEEITSLKNDSSVE 782
           +++  + L  +++ E
Sbjct: 840 NSDTNSDLTAEANSE 854


>gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
 gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
          Length = 822

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/905 (40%), Positives = 562/905 (62%), Gaps = 90/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   + A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK + +  RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKYEDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+ G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINIESERS--DDAYIFFTTRAGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TKLG  VRF  S++R  + R++ GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMS-RSATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+   ++                                                 
Sbjct: 693 EGDAVVGARVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R+GKG++  +++  ++ G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANIT--DKNGHLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-----E 905
           + +++++D G +IR  V  I    R+T GV +    ++ ++V+   +  +E  +     E
Sbjct: 758 EDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLDENAKIVTFTTVAAAEKEEVGADNE 817

Query: 906 AESTE 910
            ES E
Sbjct: 818 TESEE 822


>gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12]
 gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 845

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 547/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E + +  +I     IL
Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   + +                                        
Sbjct: 695 DDDGQDEVIGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
 gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
          Length = 827

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/898 (40%), Positives = 533/898 (59%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ A+YD+L R+ QD+S+R  LI+GQGNFGS+DGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG +A+I+NPDI++  LM+ +  PDFPT  +I G  G+K AY TGRG +VIR
Sbjct: 182 PQNLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIYGYEGVKQAYLTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGMPRVLNLKQMMEYYIRHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  LM++          
Sbjct: 362 RRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q++AILE+RL RLTG+ R  I  E     + I E   I
Sbjct: 412 ----------------FGLTEIQSKAILEMRLQRLTGMERKKIDMEYQETLLLIDELRSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  + + II++ELL VKD     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LANPQKQMQIIREELLKVKDVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DFV  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVAGAQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L   E+I   +     +      ++V AT +G V++  L +F +  R
Sbjct: 576 RTARGRSLANIMELQPAEKIRAYINIRNFDE---PGFIVMATGNGTVKKTGLDEFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       ++ I+L    G  VRFP S IR    R ++GVRGI+L 
Sbjct: 633 NGIAAITIEENDELIDARLTDGDHQIILAKSSGYVVRFPESEIRSMG-RTAMGVRGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             ++ ISM      D                                             
Sbjct: 692 ADEKCISMVTTKRFDTT------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  + GA+V +  VND 
Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTKRGARGVITLKAHE--KTGAMVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I++++ G + R  V++IR+  R T GV +      + + ++ R+ +S+   + +S
Sbjct: 758 DDLIIITNNGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDIISALARVPKSDEEIDPDS 815


>gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
 gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
          Length = 846

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/889 (41%), Positives = 554/889 (62%), Gaps = 85/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ+WS+R +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D S  EPVV+  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG VA ID+ DI++D LM+ I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S +E+    +E I+VTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKSSLEEV-NGKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKR A  +++LN L+++T+LQS FSVN +AL   +PE   L  I+  FV  R EVVVR
Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGRPEMLNLKDIIYHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DRAH+L GL IA  N+DEV+ +IR S N E AR++L+ R           
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +R E + +   IK+  DIL
Sbjct: 411 ---------------FELSELQARAIVEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + +IK ELL VK++    RR+ I     D+  ED I  E +++T+SH GY+KR 
Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+ G   R+EDF+  LF  + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLNEYKRQNRGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +R+   +   +  DE   NN +V+ ATK G V++  L  + +  
Sbjct: 576 SSKGRAIQNLINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L  K G+ +RF     R    RN+ GVRGI+L
Sbjct: 636 TNGINAITIKEDDELLEAKLTTGDSQVMLAVKSGKAIRFEEGKTRPMG-RNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   +++                                         
Sbjct: 695 ADDNDEVVGMISVDDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   +++  + G LVA+  V 
Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D+D +++++  G  IR+ V+++R+  RAT+GV + +    + + +V ++
Sbjct: 761 DDDDLMIINKSGIAIRLEVSDLRVMGRATQGVRLINLKGKDSIAAVAKV 809



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 107/251 (42%), Gaps = 13/251 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  V    V+  +  G VK+  L  Y   R    G + + ++++D + +  + +  + V+
Sbjct: 606 EEYVNNHFVIMATKKGQVKKTSLEQYSRPR--TNGINAITIKEDDELLEAKLTTGDSQVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   + +  +       A G  +  I   +  + +  ++   + ES+     ++ 
Sbjct: 664 LAVKSGKAIRFEEGKTRPMGRNASG--VRGITLADDNDEVVGMISVDDMESN-----ILV 716

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R+ L D+   NR GK    +   ++   +++++  T ++D+++  K G  +R
Sbjct: 717 VSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVAIKNVTDDDDLMIINKSGIAIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S +RV   R + GVR I+L   D + ++A VLH + + +                  
Sbjct: 777 LEVSDLRVMG-RATQGVRLINLKGKDSIAAVAKVLHEEDEIEVEDIEDVENPDNAGEALD 835

Query: 768 DTEEITSLKND 778
            T+ +     +
Sbjct: 836 GTDIVQDDSEE 846


>gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1]
 gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22]
 gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1]
 gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22]
          Length = 858

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   + +                                        
Sbjct: 695 DNDGQDEVVGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 845

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/905 (42%), Positives = 554/905 (61%), Gaps = 70/905 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K    VS+  EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +M  +WNK 
Sbjct: 3   EFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R  LI+GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH +L DL K+TVDF PNYD    EP+V+ AR PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSRIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+  C+A++D+P+   + L  ++  PDFPT   I GR G   AY TGRG +V+
Sbjct: 183 PPHNLTEVISACLALVDDPETPDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVM 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R     E     +R+ I+VTE+PYQVNKA ++E+IAE+V+EKR+  I+DLRDESD+ G R
Sbjct: 243 RARCEFETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELKR A+ADV+LN LY++T +QS+F++NMVAL    P    L  +L+AF+  R EVV
Sbjct: 303 IAIELKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L GLA+A+ NLD ++ +IR + +P  A+ +++ +SW    +  
Sbjct: 363 TRRTVFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAA 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+    + S  + +DG  +LSE+Q +AIL+LRL RLTGL +D IR+E  +L   I+E L+
Sbjct: 423 LLVERGEPSEGMHADG-YHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S++RL+ +I++EL++++D+    RR+ IV    D+  ED I  E+MVVT +H GY+K
Sbjct: 482 ILGSKTRLMEVIREELVAIRDQYGDARRSEIVADTGDISTEDLITEEEMVVTFTHAGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             P++V+ AQRRGGKG+     ++EDFV  +F  STH   LFFS+LG V+ +KV++LP  
Sbjct: 542 AQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQA 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+GK ++N+LSL   ERIT                                      
Sbjct: 602 GRGAKGKPIVNMLSLAPTERITA------------------------------------- 624

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                         +L V   T+   + + T LG   + P+      +   S G+  I+L
Sbjct: 625 --------------VLPVRDFTEGQFVCMVTSLGVVKKTPVMEY---SRPRSQGINAINL 667

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+++++ +         E + + +H  A R     + +     +N   V G   EE 
Sbjct: 668 DPGDRLVAVGL----SDGQREFMLFTRHGMAVRF---PEAKVRAMGRNARGVRGISLEEN 720

Query: 790 CQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            + +        Q ILT +  G+GK T   ++R +NR GKG+ A   ++ N  G +V   
Sbjct: 721 DRVISAQWVDSSQVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERN--GDVVGAL 778

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V + D+++LVSD GTLIR+ VN IR   R  +GV + +  + E++  +  I +++  +E
Sbjct: 779 AVTERDELMLVSDHGTLIRIAVNSIRRTGRNAQGVRLINLGEGEQLAGLALIADTD-EEE 837

Query: 906 AESTE 910
            E T+
Sbjct: 838 GEQTD 842


>gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
 gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
          Length = 815

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/898 (41%), Positives = 550/898 (61%), Gaps = 88/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ K+TVDF  NYD S +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IDVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM R           
Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------YELSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQRRGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+         ++ Y+ F T++G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINV--QAEHDDHSYLFFTTRYGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ TK+G  VRF  + +R    R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNMG-RAATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  +++                                                 
Sbjct: 693 TNDYVVGASVISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKG++  ++++ N  G L  +  VN +
Sbjct: 706 ------NQEVLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKN--GPLAGLMAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDE 905
           + ++++++ G +IR  V  I    RAT GV +    K  ++V   SV    E E+ +E
Sbjct: 758 EDLMVITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVNEE 815


>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
 gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
          Length = 840

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/904 (41%), Positives = 548/904 (60%), Gaps = 92/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + K
Sbjct: 7   DKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+GK+TVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EV+   V +IDN      + +++ ++EII+GPDFPTGA ILG+ GI+ AY TGRG I
Sbjct: 187 NLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATILGKMGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V+ IE     + +I+VTE+PY VNKA ++EK+AEL +EK+I  I DLRDESDR G 
Sbjct: 247 RVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+R  +A+VILNQL ++T LQ  F V M+AL   +P    L+ +LK ++  ++EV
Sbjct: 307 RIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNLMQMLKLYLEHQKEV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ ELM+R        
Sbjct: 367 VTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q +AI+++RL  LTGL R+ + NE   L  +I+E  
Sbjct: 419 ------------------FGLSDAQAQAIVDMRLRALTGLEREKLENEFKELEAKIEELR 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+   +LLG+I++E++ + D+    RRT I     DM  ED I  E+ +V ++ LGY+
Sbjct: 461 AILADEKKLLGVIREEIMLISDKYGDDRRTSIGFDEFDMSMEDLIPDENTIVAMTKLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +++Q RGGKG  G+   D+D++ DL + + H  ++FF++ G VY+ K + +P 
Sbjct: 521 KRMSVDNFKSQNRGGKGIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ARG A+IN+L L  GE IT I+P  E +   ++ ++  ATK+G V++  + ++  +
Sbjct: 581 GSRTARGTAIINLLQLLPGESITAIIPMKEYD---DDKFLFMATKNGMVKKTPMMEYANV 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DI L TK+GQC+RF  + +RV  GR S+GV G+ 
Sbjct: 638 RKNGLQAIVLREDDELIEVKATDNSKDIFLITKMGQCIRFNETDVRV-TGRVSMGVIGMK 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+V+ M                                                  
Sbjct: 697 LNDDDEVVGM-------------------------------------------------- 706

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              ++  + + +L VSE G GKRT   +F    R GKG+    +++  + G +V    V+
Sbjct: 707 ---QMDTQGEKLLIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITE--KTGKIVGAKLVH 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEIVDEA 906
           D+  I++++++G +IR+ V +I +  R T GV + +     D RV S+ ++R+     E 
Sbjct: 762 DDHDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVASIAKVRDDGSKSEG 821

Query: 907 ESTE 910
           E  E
Sbjct: 822 EGLE 825


>gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 878

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 538/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A]
 gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A]
          Length = 855

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 561/905 (61%), Gaps = 87/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A+                                        
Sbjct: 695 DEDGGDEVIGMICIKDPEAES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE
Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821

Query: 906 AESTE 910
             +T+
Sbjct: 822 NSNTD 826



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 115/255 (45%), Gaps = 13/255 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++  
Sbjct: 608 FINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDKVIEVRMTNGDNEIIIA 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     + +    A G      L  + G+ +  ++   + E+      ++  +
Sbjct: 666 NRNGRAIRFHESAVRVMGRTATGVR-GMTLDEDGGDEVIGMICIKDPEAES----IMVVS 720

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+ + NR GK    L+  D+   ++++++ T END+++  K G  +R  
Sbjct: 721 EQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLK 780

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMA--IVLHADADYDERICYMKHMSAQRRLISG 767
           ++ +R+   R + GVR I+L K +  I     +    +   +     +++++      + 
Sbjct: 781 VAEVRIMG-RATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTT 839

Query: 768 DTEEITSLKNDSSVE 782
           +++  + L  +++ E
Sbjct: 840 NSDTNSDLTAEANSE 854


>gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6]
 gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6]
          Length = 822

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDESESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  S +R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSTVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 DGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170]
 gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170]
          Length = 844

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 557/900 (61%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D S QEP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA IDN DI++D L+  I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR+G RVV
Sbjct: 243 AKAVIEEVQ-GRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YT+LQS FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  LM+R           
Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R+E   +   I +  DIL
Sbjct: 411 ---------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK ELL VKD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DRKERRMQIIKDELLEVKDKYGDERRSEINFAGGDLSIEDMIPNEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   NN +V+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   DE+L  +  T  ++I L  K G+ +RF  S  R    RN+ GVRGI L
Sbjct: 636 QNGINAIGIRENDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPMG-RNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V + + +                                         
Sbjct: 695 ADDNDEVIGMVSVNNFEDN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR++  D+R++NR GKG++   +++  + G LV++  V+
Sbjct: 714 -----------ILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITE--KTGGLVSIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
           D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ ++ + V+E +
Sbjct: 761 DADDLMIINKSGIAIRMSVEDLRVMGRATQGVKLINIKGADSIAAVAKVMKDDDAVEEVD 820


>gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 878

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/857 (43%), Positives = 539/857 (62%), Gaps = 25/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           RGI LA  D+V+S+ I     A                    +   +     I   + + 
Sbjct: 722 RGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNG 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++   + 
Sbjct: 782 SVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVV 834

Query: 840 ALVAVFPVNDNDQIILV 856
            L  V    D++++  +
Sbjct: 835 GLQRVAEPVDDEELDAI 851


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 547/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
 gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
          Length = 867

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/836 (44%), Positives = 525/836 (62%), Gaps = 15/836 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L D+ K+TVDF  NYDGS  EP V   R P +LVNGG GIAVGMATNIP H
Sbjct: 126 RMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+DGCVA+ID P++D+  LME I GPDFPT  +I G  GI+ AY TGRG I +R  
Sbjct: 186 NINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGARGIREAYRTGRGRIYMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+    +  IVVTEIPYQVNKA +LEKIAELV+EK+I  I  LRDESD+ G R+VIE
Sbjct: 246 ASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG   +VILN LY  T LQ++F +NMVAL+  +P    L  +L+AF+A R EVV RRT
Sbjct: 306 LRRGEVGEVILNNLYAQTQLQTVFGINMVALDKGQPRLMNLKQVLEAFIAHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R H+L GLA+A++N+D ++ +I+ S NP  AR++L+   W    +  +++ 
Sbjct: 366 LYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGMLER 425

Query: 434 IDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +    +            +LS  Q +AIL+L+L RLTGL +D I  E   L  +I 
Sbjct: 426 AGADATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEKIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L+IL +  RL  +++ EL+ ++D     RRT I +   D+  ED I  +D+VVT+SH 
Sbjct: 486 ELLNILRNPDRLTEVVRDELVELRDSYGDERRTEIYQNQSDLTVEDLINEQDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL  Y+AQ+RGG+GRS   M+DEDF+  LF+  TH ++L FSS G VY +KV+ 
Sbjct: 546 GYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYWKKVYE 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LPIGS  ARGK ++N+L L +GERI+ ++P  E     ++ +V  AT +G V+R  LS+F
Sbjct: 606 LPIGSRNARGKPIVNLLPLEEGERISAVLPVRE---FTDDEFVFMATANGTVKRTALSNF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ +   D ++ V     + DI+L    G+ +RF    +R    R + GVR
Sbjct: 663 SRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L+    ++ + IV   D        Y K  + +     G           S   G +
Sbjct: 722 GIRLSDEQTMVGLIIVEDGDILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRNGGV 781

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                      E  I+ +S  G   RT+  D  + +R+ +G+R   +    ++  L
Sbjct: 782 ---VGAVQVATEDEIMLISNGGVLVRTAVEDISVMSRNTQGVRLIRLDDKEQLVEL 834



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 97/253 (38%), Gaps = 16/253 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        ++ V   +  G VKR  LS +   R    G   + +RD D +  + 
Sbjct: 628 ERISAVLPVREFTDDEFVFMATANGTVKRTALSNFSRPRS--NGIIALDIRDGDRLVGVA 685

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
                  ++ F+  G   +     +      A G   +  + L+  + +  ++   + + 
Sbjct: 686 RTDGQRDIMLFADSGKAIRFNEQDVRPMGRTAAG---VRGIRLSDEQTMVGLIIVEDGD- 741

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++ AT +G  +R  + D+    R G   + + + D    ++       E++I+L
Sbjct: 742 ------ILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRNGGVVGAVQVATEDEIML 795

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  +  I V + RN+ GVR I L   +Q++ +  +     + +E        
Sbjct: 796 ISNGGVLVRTAVEDISVMS-RNTQGVRLIRLDDKEQLVELERIPFLGDEDEEAGGDDGDD 854

Query: 759 SAQRRLISGDTEE 771
           +A     +   EE
Sbjct: 855 NAGENSSASGEEE 867


>gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110]
 gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 841

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/889 (41%), Positives = 540/889 (60%), Gaps = 85/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  ++I DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  + Y
Sbjct: 2   QREKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD++ RM Q++SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + +  +L DL K+T+DF PN+D S +EP+VL A +PN+L+NG  GIAVGMATNIP
Sbjct: 122 EVRMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+NP+I ++ LM  I+ PDFPT  +I G  G+++AY TGRG IV+R
Sbjct: 182 PHNLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIYGYNGVRDAYLTGRGKIVLR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E T    RE I++TE+PYQVNKA ++EKIA LV++K++  IADLRDESDR G RV
Sbjct: 242 AKVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A   V++N+L++ T LQ  F V M+AL G  P   TL   ++ +V  R EV++
Sbjct: 302 VIELKKDAVTQVVINRLFKLTQLQETFGVIMLALVGGIPRVLTLKETIQYYVNHRHEVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL I + NLDE++  IR SP+ ETAR  LM            
Sbjct: 362 RRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMA----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LS++Q +AIL++RL RLTGL R  I +E   L   I+    I
Sbjct: 411 ---------------TFSLSDLQAKAILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++    + +IK+ELL +K      RRT+IV    D   ED I  ED+V+T++H GY+KR
Sbjct: 456 LANEKLQMQLIKKELLQIKKTYGDERRTQIVYETEDFSVEDMIAEEDVVITITHQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G SGV  R++DF+  +FI STH  +LFF+S G  Y  KV  +P   
Sbjct: 516 FPVSGYRRQGRGGRGISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+++ N++    GE+I   +   E     +  ++V ATK+G +++  LS++    R
Sbjct: 576 RTARGRSITNLIEFATGEKIKASINVKEFN---DTQFIVMATKNGTIKKTPLSEYSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ +   DE++        + I+L    G  VRFP   +R    RNS+GV+G S++
Sbjct: 633 SGIIAINITDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPMG-RNSIGVKGASIS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + +ISM      DA                                            
Sbjct: 692 GDEAIISMVSTPRNDAT------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +++ G+GKR++  D+R++ R   G+     ++  ++G LV +  VND 
Sbjct: 709 ---------LLAITDNGYGKRSAIEDYRMTKRGANGVITLKANE--KVGKLVDMLEVNDG 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + II++++KG + R  + +IR+  R T GV +    +D+ V +V R+ +
Sbjct: 758 EDIIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVARVPK 806


>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 838

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/918 (40%), Positives = 539/918 (58%), Gaps = 91/918 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +            +  V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MDDQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  NK Y K ARI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+
Sbjct: 61  NEAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ K A  +L D+ KDTVDF PNYD S +EP VL ++ P +L+NG  
Sbjct: 121 DGDPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSA 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD  V +ID+PD  ++ LM  I+GPDFPTGA ILG +GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGVSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +H+E    ++ +IVVTEIPYQVNKA ++E IA LV++K +  I DLR
Sbjct: 241 YTTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIEL+     +++LN+LY++T +Q  F +  +AL    P    L  IL  
Sbjct: 301 DESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRILNLKEILVY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++EV+ R+T+Y LNKA++RAH+L GL IA+ +LDEV+  IR S   E AR  L+ +
Sbjct: 361 YLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLISK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q +AIL++RL RLTGL R  I +E   +
Sbjct: 421 --------------------------FGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEV 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     +L+   +++GI K + L VK     PRRT IV    +++ ED I  ED+V+
Sbjct: 455 MATIAYLESVLADEHKIMGIAKDDFLDVKKRFGDPRRTSIVPDAGEIDAEDLIAEEDIVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRS---GVVMRDE-----DFVTDLFIVSTHTSVLFF 592
           T+SH  Y+KR  L+ +R Q RGG+G     G +++++     DF   L + STH ++LFF
Sbjct: 515 TISHQSYIKRQALTNFRNQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY++K + +P    QA+G  + N+L L + E+IT I+      S   N ++  AT
Sbjct: 575 TNQGRVYRQKGYEIPEAGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMAT 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G +++  +S+F    R+G IA+ LD  ++++ V+  +  +DILL T+ G  +RF  S 
Sbjct: 635 NKGVIKKTSVSEFKTARRAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESD 694

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R    R + GVRGI+L   D ++SM                            GD+ E+
Sbjct: 695 VRPMG-RTAHGVRGITLRHHDVLVSMD------------------------SCEGDSGEV 729

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                       LTV+E G GKRT   ++R+  R GKGI    V
Sbjct: 730 ----------------------------LTVTEGGLGKRTDISEYRLQTRGGKGIINLKV 761

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  N+ G +V    VND+  I+L+S  G +IR+  ++I   SR  +GV +    K ++V 
Sbjct: 762 T--NKTGDIVGSKLVNDHHDILLISAAGIIIRMKASDISSYSRNAQGVKMMDLEKGDKVA 819

Query: 893 SVERIRESEIVDEAESTE 910
           ++  +    + DE + TE
Sbjct: 820 ALAIV--DTVSDEEKETE 835



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVS 584
           +  + C      V+TV+  G  KR  +S YR Q RGGKG   + +  +  D V     V+
Sbjct: 717 VSMDSCEGDSGEVLTVTEGGLGKRTDISEYRLQTRGGKGIINLKVTNKTGDIVGSKL-VN 775

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDES 641
            H  +L  S+ G + + K   +   S  A+G   + ++ L +G+++     +    ++E 
Sbjct: 776 DHHDILLISAAGIIIRMKASDISSYSRNAQG---VKMMDLEKGDKVAALAIVDTVSDEEK 832

Query: 642 SWNNL 646
              N 
Sbjct: 833 ETENA 837


>gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
 gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 831

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/893 (41%), Positives = 548/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +EKRI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+     +    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAK--KEDILDKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR    R++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                                 
Sbjct: 693 EEDWVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 706 ------NQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+   ++  +  
Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 108/259 (41%), Gaps = 23/259 (8%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RR +        R+  +   L + D +  V    + ++  +  +     RF +S      
Sbjct: 361 RRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSE----- 415

Query: 718 GRNSVGVRGISLA-----KGDQVIS----MAIVLHADADYDERICYMKHMSAQRRLISGD 768
            R S  +  + L      + D++ S    +  ++   AD   R   ++ +   +  +   
Sbjct: 416 -RQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAII--KEEMEEI 472

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  + +    + G +     ++L  +E  ++T+S  G+ KR +  +FR   R G+G++
Sbjct: 473 KRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
            T V+  + +  LV+    + +D ++  ++ G + R+   EI    RA KG   + +   
Sbjct: 533 GTGVNDDDFVRELVST---STHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKL 589

Query: 886 AKDERVVSVERIRESEIVD 904
              E + ++   ++ +I+D
Sbjct: 590 DDGETIQTIINAKKEDILD 608


>gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
 gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
          Length = 823

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 548/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
 gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
          Length = 840

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/898 (40%), Positives = 552/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++G+     +
Sbjct: 3   DGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+Q+ +  +L D+ K+TVD + N+D +  EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A ID+ +I +D LME I+ PDFPTG +I G  G+K+A+ TGRG +V+R
Sbjct: 183 PHNLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIYGYDGVKDAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE I+V+EIPYQVNKA M++K A+LV EK+I  IA++RDESDR G R+V
Sbjct: 243 AKASFEEVQ-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+YLL KA +RAH+L GL IA  N+DEV+R+IR S N + AR  L++            
Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIE------------ 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E   L   I +  DIL
Sbjct: 410 --------------AFKLTEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIADYKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++ R + IIK+ELL V+ +    RR+ I     D+   D I  E +V+T+SH GY+KR 
Sbjct: 456 ANKERRMNIIKEELLEVQRKYGDDRRSVIEYAGGDVSITDLIPDEQVVLTISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEPDDKVMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +    ++ ++L  K G+ +RF  S  R    RN+ GVRGI L
Sbjct: 636 TNGINAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPMG-RNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  +   +++                                         
Sbjct: 695 ADDNDEVVGMIAINDLESE----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VS+KG+GKR+S  D+RI+NR GKG++  +V++  + G LVA+  V 
Sbjct: 714 -----------ILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTE--KTGQLVAIKNVI 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D+D +++++  G  IR+ V+ +R+  RAT+GV +    +D+ + +V ++ + E   E 
Sbjct: 761 DSDDLMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKDENEVED 818



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 102/244 (41%), Gaps = 13/244 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  V    V+  +  G VK+ PL  Y   R    G + + ++D+D + +  +    + V+
Sbjct: 606 EEYVNSRYVIMATKKGQVKKTPLEQYSRPR--TNGINAITIKDDDELLEAKLTRGDSQVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   + +  +       A G  +  I   +  + +  ++   + ES      ++ 
Sbjct: 664 LAVKSGKAIRFEESKTRPMGRNASG--VRGIRLADDNDEVVGMIAINDLESE-----ILV 716

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            +  G  +R+ + D+   NR GK    ++  ++   +++++     +D+++  K G  +R
Sbjct: 717 VSDKGYGKRSSIEDYRITNRGGKGVKTINVTEKTGQLVAIKNVIDSDDLMIINKSGIAIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S++RV   R + GVR I + + D + ++A V+  + + ++                 
Sbjct: 777 MDVSSLRVMG-RATQGVRLIKVREDDSIAAVAKVMKDENEVEDAEAVEVEGVEVDGTSLD 835

Query: 768 DTEE 771
             EE
Sbjct: 836 SNEE 839


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 547/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836]
 gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836]
          Length = 907

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/916 (37%), Positives = 508/916 (55%), Gaps = 89/916 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  IS        I  + +  EMQ SYL YA+ VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MTETPISPG---HDRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+RI G+VMG+YHPHG++AIYD L R+AQ W +R  +I+ QGNFGS 
Sbjct: 58  YDGGYRPDRGFSKCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  ++ D+ ++TVDFRPNYDG  QEPV+L +R+PN+LVNG  
Sbjct: 118 GNDPAAAMRYTECRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSA 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV       ++NPD   + +    ME I+GPDFP GA+I+G  G
Sbjct: 178 GIAVGMATQIPPHNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIVGYKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +R V  IE+ +  R  +VV+E+PY VN   + +KIAELV   ++  I
Sbjct: 238 IDDAYRTGRGSVTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RD+ S R G R+VI LKR A   V+LN LY++T LQ  F  NM+AL    P   +L 
Sbjct: 298 ADIRDDTSSRTGQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVDGVPRTLSLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +  ++  + EV+ RRT+Y L +A   AHV  G   A+  LDEV+ +IR SP+ + AR+
Sbjct: 358 LFITHWIDHQIEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQ 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + E+Q +AIL+++L RL  L R  I +
Sbjct: 418 GLIS--------------------------LLDIDEIQAQAILDMQLRRLAALERQKIID 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            LN L   I +  DIL+   R   I++ EL  + D+    RRT I+    D+  +D +  
Sbjct: 452 RLNELEAVIADLEDILADPVRQRHIVRDELAEIVDKFGDDRRTTIIAADGDLSVQDLVPD 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR Q RGGKG  G  MR ED +   F  + H  +LFF++ 
Sbjct: 512 EDVVVTITRGGYAKRTKTDLYRVQNRGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTK 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ KVW+LP  +  A+G  +  +LS    E I  ++   + + +    Y+V ATK G
Sbjct: 572 GRVYRAKVWQLPESARDAKGSHVAGLLSFQPDEEIAQVLTLRDYDQAD---YLVLATKKG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            V++  L D+    +SG IA+      DE++  +  + E+D+LL +K GQ +RF  +  +
Sbjct: 629 LVKKTPLRDYDSARQSGIIAVNFREADDELIGADLASAEDDLLLVSKKGQSIRFTANDEQ 688

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +   GR + GV G+    GD+++SM+++     +                          
Sbjct: 689 LRPMGRATSGVTGMKFRAGDELLSMSVIRAGSEE-------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                   QF+ TV++ G+ KR+   ++R   R G GI+A  ++
Sbjct: 723 ----------------------DTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKLN 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E G+LV    V D+DQ++ +   G ++R  V+ + +  R T GV        + VV+
Sbjct: 761 --DERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSVPVKGRDTMGVRFAGVGASDAVVA 818

Query: 894 VERIRESEIVDEAEST 909
           + R  +  + DE ++ 
Sbjct: 819 IARNTDLTVADELDAA 834



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 99/283 (34%), Gaps = 9/283 (3%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDL 580
           E +  +       + D +V  +  G VK+ PL  Y + R+   G   V  R+ +D +   
Sbjct: 604 EEIAQVLTLRDYDQADYLVLATKKGLVKKTPLRDYDSARQS--GIIAVNFREADDELIGA 661

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + S    +L  S  G   +          P  R  + +  +    G+ + ++       
Sbjct: 662 DLASAEDDLLLVSKKGQSIRFTAND-EQLRPMGRATSGVTGMKFRAGDELLSMSVIRAG- 719

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
           S  +  +V   T  G  +R+++S++ Q  R G     +   DE   ++        + +L
Sbjct: 720 SEEDTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGALIVVDSDQVL 779

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
                GQ VR  +       GR+++GVR   +   D V+++A         +        
Sbjct: 780 AIKTSGQVVRSRV-DSVPVKGRDTMGVRFAGVGASDAVVAIARNTDLTVADELDAAAGTD 838

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                 ++  +   +  +  DS       +      +   + +
Sbjct: 839 ALVVDGVVQDEAGSLDGVVVDSGEVDGAQDVDGSTTEPAPESV 881


>gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 848

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/897 (39%), Positives = 541/897 (60%), Gaps = 84/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +EQIVVTE+PY VNKA ++E+I+EL R+K+I  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A++   P+  +L  IL A++A + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLIN---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 413 ----------------GYALSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT + V  +L +EDED I  ED++VT+++ GY+
Sbjct: 457 ILAHEERVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV    ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVATGEFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I T++     E+  +N Y+ F T+ G V+R  + +F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEGNEKIQTVINVR-GEAGESNDYLFFVTRLGVVKRTAVKEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+      +I++ T  G  V F  + +RV   R++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVMG-RSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+   ++                                               
Sbjct: 695 LREGDLVVGSDVL----------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+  +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+
Sbjct: 708 ------EKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVS 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             + I++ + +G +IR  V+ +    RAT GV +     + +V ++ ++   E++++
Sbjct: 760 GQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 98/248 (39%), Gaps = 15/248 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D +  V+ LG VKR  +  +   R    G   + + D+D V  + I     +++  +  G
Sbjct: 613 DYLFFVTRLGVVKRTAVKEFANIR--TNGLKALTLHDDDEVLSVQITDGTQNIIIATHNG 670

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +        + +    A G   +  + L +G+ +         +    +  V+  T+ G 
Sbjct: 671 YSVSFAENDVRVMGRSAAG---VRGIRLREGDLVVG------SDVLEKDHNVLIITEKGY 721

Query: 657 VRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            ++  +S++    R GK    A   +    +  +   + + DI++TT  G  +RF +   
Sbjct: 722 GKQTPVSEYPIKGRGGKGIKTANITEKNGPLAGMTIVSGQEDIMVTTTQGVMIRFNV-DS 780

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR ++GVR I L    +V ++A V H +   D             + I   +E + 
Sbjct: 781 VSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLEDVSRETSDKAPLDEQQIDQVSELLD 840

Query: 774 SLKNDSSV 781
             ++D+  
Sbjct: 841 RAQDDTDK 848


>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
 gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
          Length = 859

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/893 (41%), Positives = 541/893 (60%), Gaps = 60/893 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ    + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP++    L++II GPDFPTG  ILGR+GI +AY +GRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQILGRSGIHDAYLSGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++T++PYQ NKAA++E+IA+LV +KRI  I+D+RDESDR 
Sbjct: 244 RGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L+ F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  TA++EL+++      
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L ++I +
Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II++EL  +K    TPRRT IV    ++ D D I  E  ++ ++  G
Sbjct: 458 LKDILARRERIEAIIEEELAQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++   ++++D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S  ARG  ++ +L + + E+IT+I+   E     +++++V  T++G +++  LS F 
Sbjct: 578 QAASRTARGIPIVQMLPIPKDEKITSIVAVSE---FSDDVFLVMLTRNGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L   D++  V    +E+ I+L T  G  + F     ++   GR + GV+
Sbjct: 635 NIRTNGLIAISLGDGDQLRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPLGRATRGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L KGD++ISM I                       L +  T  +   + D  +  N 
Sbjct: 695 AMKLKKGDELISMDI-----------------------LTAQVTAGMAYTEEDEEILDNE 731

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +EE  +E      +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++ 
Sbjct: 732 NEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVRAIKFK--SDSDCLASLR 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN  D++++VS++G +IR  V+ I + SRA  GV +     ++ + +V  + 
Sbjct: 790 VVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDAIAAVALVP 842


>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
 gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
          Length = 827

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/899 (42%), Positives = 534/899 (59%), Gaps = 83/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M ++G+    KY
Sbjct: 6   NEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNKY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK A + GEV+ KYHPHG+ AIYDA+ RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 66  VKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  +L D+ K+TVDF+ N+DG+  EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 126 EARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++DNP+I LD LME I+GPDFPTG V + RTGI+ A+ TGRGSI +R
Sbjct: 186 PHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGGV-MSRTGIRQAFETGRGSIRLR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E   G    IVVTEIPYQVNK ++++  A LVR KRI DIA++RDESDRQG R+V
Sbjct: 245 AKVRFE-ERGRGTSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELKRGA  +++LNQLY+YT LQS FSVN +A+    P    L   L  F+  R +VV R
Sbjct: 304 FELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRSPRVLPLKDALALFLDHRADVVRR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+RAH+L G  IA+  LDEV+ +IR S +  TAR  L+             
Sbjct: 364 RTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAE----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ +A+L++RL RLTGL R+ ++ E   L  EI     IL
Sbjct: 413 ---------------FGLTEVQAQAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              + L  +IK+EL  VK      RRT+I +   D+  ED I  E MVVT++  GY+KR 
Sbjct: 458 GDANELRKVIKRELREVKKNFADARRTQISDNDSDISKEDLIAEEHMVVTLTRGGYIKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ YRAQ RGG+G +    +++D  + L + +TH  +LFF+  G VY+EK++ LP    
Sbjct: 518 PLAAYRAQARGGRGVNAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAER 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG  L NIL L + ER+ T++   +  +     Y VFAT+ G +++  + ++  +N S
Sbjct: 578 AARGSHLRNILPLAEDERVATVLSVRDFNAEG---YFVFATRQGMIKKTAIREYGNLNAS 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++SV        ++L T+ GQ +RFP + +R   GR + GVRGI L  
Sbjct: 635 GLIAINLIEGDELVSVRHGWDGAHVVLATREGQAIRFPEADVR-DTGRATQGVRGIRLKP 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D ++S++++                                                  
Sbjct: 694 NDALVSLSVIAGE----------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
              L +  +L V+E G+GKRT   D+ +  R G+G+    V+   + G LV++  V  ++
Sbjct: 707 --HLGDAELLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTP--KTGPLVSLDYVRGDE 762

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++S+ G LIR  V E+    R ++GV I      +RVVSV  +   E +  A  T+
Sbjct: 763 ELLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLGDGDRVVSVMVMLAEETLGRAADTD 821


>gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 860

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/918 (38%), Positives = 509/918 (55%), Gaps = 93/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E+    I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+ 
Sbjct: 61  YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
               PAA RYTEC++   A  ++ D+ +++VDF+ NYDG  QEP +L AR+PN+LVNG  
Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV  G    +++PD   + L+    E I GPDFPTGA ILGR G
Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATILGRRG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+ ++  I
Sbjct: 241 IEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGI 299

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE+  R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L 
Sbjct: 300 ADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V  + +V+VRR+++ L KA++R H+L G   A+  LD V+ +IR S   + AR 
Sbjct: 360 GFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEARG 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                          G + + EVQ  AIL L+L RL  L R  I+ 
Sbjct: 420 GLM--------------------------GLLGVDEVQADAILALQLRRLAALERLKIQQ 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++ +  DI++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  
Sbjct: 454 EAEELQAKVADLKDIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPE 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++L
Sbjct: 514 EEVVVTITRSGYAKRTRTDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNL 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   A+G+ + N+L+   GE I  +M   + E +    ++V ATK G
Sbjct: 574 GRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEEIAQVMELKDYEQAD---FLVLATKRG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +LS++      G IA+ L        DE++S    ++  D+LL ++ GQ  RF  
Sbjct: 631 LVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHA 690

Query: 711 SAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S   +    R + GV G+    GD +++M +V     D D                    
Sbjct: 691 SDDVLRPTGRATSGVTGMRFRDGDWLLAMDVVDPQWTDAD-------------------- 730

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +  V+E G+ KRT+  ++    R G G++ 
Sbjct: 731 ------------------------------LFVVTEGGYAKRTNVAEYPTKGRGGLGVKV 760

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ +  E G LV       +D+++ + + G ++R  V+E+ +  R T+GV        +
Sbjct: 761 ANLVE--ERGDLVGALVTAPSDEVLCIMESGKVVRSRVDEVSVTGRNTQGVTFAKPDDGD 818

Query: 890 RVVSVERIRESEIVDEAE 907
           R+++V R  E E+  + E
Sbjct: 819 RIIAVARNTERELDGDDE 836



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 104/257 (40%), Gaps = 15/257 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  + +     + D +V  +  G VK+  LS Y + R G  G   + +R++     D 
Sbjct: 606 EEIAQVMELKDYEQADFLVLATKRGLVKKTRLSEYDSNRSG--GVIAINLREDADGNPDE 663

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    ++S    +L  S  G   +       +  P  R  + +  +    G+ +  +   
Sbjct: 664 LVSARLLSEGQDLLLVSRHGQSARFHASD-DVLRPTGRATSGVTGMRFRDGDWLLAMDVV 722

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
              +  W +  +   T+ G  +R  ++++    R G   K+A  ++ R +++        
Sbjct: 723 ---DPQWTDADLFVVTEGGYAKRTNVAEYPTKGRGGLGVKVANLVEERGDLVGALVTAPS 779

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +++L   + G+ VR  +  + V  GRN+ GV       GD++I++A     + D D+   
Sbjct: 780 DEVLCIMESGKVVRSRVDEVSV-TGRNTQGVTFAKPDDGDRIIAVARNTERELDGDDEPA 838

Query: 754 YMKHMSAQRRLISGDTE 770
                +     +S D E
Sbjct: 839 APADQAQDAVALSEDDE 855


>gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
 gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
          Length = 879

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/855 (44%), Positives = 540/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIREQFGDARRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA+ D V+S+ +      +L    +   +    +    + R   G      + +N 
Sbjct: 722 RGIKLAEKDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S V     E+  Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 SVVGAVQVEDTDQ--------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    D++++
Sbjct: 834 VGLQRVAEPVDDEEL 848


>gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 817

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/888 (42%), Positives = 554/888 (62%), Gaps = 85/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVITIIKEEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQRRGG+G  G  + D+DFV +L   +TH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   E  S  N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTII--SEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      +DI++ TK G  VRF  S +R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKEGDELINVIRTNGNDDIIIGTKTGYSVRFNESDVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+VI  + +                                                 
Sbjct: 693 EGDEVIGASRI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN +
Sbjct: 704 ----TDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLVTVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + I++++D G +IR  V +I    RAT GV I    +D +++++  ++
Sbjct: 758 EDIMVITDTGVMIRTSVADISQTGRATLGVKIMRLDQDAKIMTLALVQ 805


>gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
 gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
          Length = 867

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/913 (40%), Positives = 547/913 (59%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDNDRILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGS+
Sbjct: 57  LGIGNTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNL EV++GC A IDNPDIDLD LM+ I+ PDFPTGA I G  G++ A
Sbjct: 177 GIAVGMATNMPTHNLSEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  + IE +    ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  
Sbjct: 237 YETGRGRIVMRAKAEIE-SGESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DESGRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L QR
Sbjct: 356 FVEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     IL        ++K EL  VK++    RRT I     +   ED    + +V+
Sbjct: 450 ERQIAYLQQILDDPELCKKVMKDELNEVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH+GY+KR PLS +R Q RGG G      R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHMGYIKRTPLSEFREQARGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++   + I  I+      DES  N+ YV+FATK+G V+
Sbjct: 570 LKCFEIPEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR    
Sbjct: 630 KTSLEAYSRPRANGVIAINIVDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTMG- 688

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG+ L  G D+V+ M  V  A+++                              
Sbjct: 689 RTATGVRGMRLDGGDDEVVGMVTVNEAESES----------------------------- 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE+G+GKR+   D+R++NR GKG++   +++  +
Sbjct: 720 ----------------------VMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LV++  V D + +++++  G +IR+ V ++R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVSIKNVTDENDLMIINKSGVVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEATVEEE 828



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 109/276 (39%), Gaps = 21/276 (7%)

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R T + +                V+  +  G VK+  L  Y   R    G   + + D D
Sbjct: 604 RLTTLTDES--------FNNSHYVIFATKNGTVKKTSLEAYSRPR--ANGVIAINIVDGD 653

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            V D+ + +    ++  +  G   +     +      A G  +  +      + +  ++ 
Sbjct: 654 EVVDVRLTNGSNELIMANRNGRAVRFNENTIRTMGRTATG--VRGMRLDGGDDEVVGMVT 711

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQ 692
             E ES      V+  ++ G  +R+++ D+   NR GK    L   +    ++S++  T 
Sbjct: 712 VNEAESES----VMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTD 767

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           END+++  K G  +R  ++ +RV   R + GVR I+LAK + VI+ ++     ++ +  +
Sbjct: 768 ENDLMIINKSGVVIRLAVADVRVMG-RATQGVRLINLAKKNDVIA-SVCKVMSSELEATV 825

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
                     +      + ++   +D   E  +  E
Sbjct: 826 EEESRAQWANKTEEIKKDSLSETNSDVEEEPLVDFE 861


>gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 915

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/891 (43%), Positives = 549/891 (61%), Gaps = 66/891 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V+GC+A+I+N D+ +D LM  I GPDFPTG +I GR+GI  AY TGRGS+ +R  
Sbjct: 186 NLTEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T +Q+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EIKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D V+ +IR S  P  A+  L+ R W   ++  +++
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  YL+E Q +AIL+LRL +LTGL  + I  E  SL   I
Sbjct: 426 KAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+SH
Sbjct: 486 AELLFILASPVRLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L++GERIT I+P  E ++   + YV FAT +G V++  LSD
Sbjct: 606 QLPEASRGARGRPIINLLPLDEGERITAILPVKEYDA---DKYVFFATANGTVKKTSLSD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV--------- 715
           F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   + R          
Sbjct: 663 FSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADATDEVD 722

Query: 716 ----------------------------FAGRNSVGVRGISLAKGDQVISMAI------V 741
                                         GR + GVRGI L  GD+V+S+ +      +
Sbjct: 723 TDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGDGAI 782

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
           L A  +   +   +     + R   G        +N   ++    E+  Q        I+
Sbjct: 783 LTATENGYGKRTALDEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQ--------IM 834

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            ++  G   RT   +  +  R+  G+R     +      +V +  V ++D+
Sbjct: 835 LITNGGTLVRTRVSEVSVIGRNTGGVRLIRTGEDE---TVVGLQRVAESDE 882



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 108/301 (35%), Gaps = 57/301 (18%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+  LS +   R    G   + +++ D +  + 
Sbjct: 629 ERITAILPVKEYDADKYVFFATANGTVKKTSLSDF--SRPLSSGIRAINLKEGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA---------------------------- 613
           I      ++ FS  G V      R   GS +A                            
Sbjct: 687 ITDGSNEIMLFSDAGKVV-----RFAEGSGRADADATDEVDTDDDAGNDDDGSDNGEGTE 741

Query: 614 -RGK-----------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
            +G            A +  + L  G+++ +++    D +      ++ AT++G  +R  
Sbjct: 742 SKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGDGA------ILTATENGYGKRTA 795

Query: 662 LSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           L ++   +R   G I++K+D    +++        + I+L T  G  VR  +S + V   
Sbjct: 796 LDEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVSEVSVIG- 854

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVR I   + + V+ +  V  +D D +E +     +S      +           D
Sbjct: 855 RNTGGVRLIRTGEDETVVGLQRVAESDEDENEVLAVEGEVSEGTDTAADTGAVDAGEAGD 914

Query: 779 S 779
            
Sbjct: 915 E 915


>gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 878

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/855 (44%), Positives = 540/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH
Sbjct: 486 AELLHILGSAERLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA  D V+S+ +      +L    +   +         + R   G      + +N 
Sbjct: 722 RGIKLAGEDSVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S V     ++  Q        I+ +++ G   RT   +  +  R+ +G+     ++   +
Sbjct: 782 SVVGAVQVDDADQ--------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    D++++
Sbjct: 834 VGLQRVAEPVDDEEL 848


>gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160]
 gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160]
          Length = 822

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/909 (38%), Positives = 505/909 (55%), Gaps = 97/909 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE            I  V +  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTET------PARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVKCAR+ GEVMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 55  YDQGFRPDRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L ++ ++TVDF+PNYDG  QEP+VL  R PN+L+NG  
Sbjct: 115 GNDPAAAMRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATN+P HNL EV D    ++D+P+ + +      ME ++GPDFPT  +I+GR G
Sbjct: 175 GIAVGMATNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIVGREG 234

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGS+ +R V  +E+ +  R Q+VVTE+PYQVN   + E IAE VR+ R+  I
Sbjct: 235 IEEAYRTGRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGI 294

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ DES DR G R+VI L+R A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 295 SEIADESSDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDGVPRTLRLD 354

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + EV+ RRT+Y L KA +RAH+L GLA A+  LD V+ +IR S + + AR 
Sbjct: 355 ELVRYYVLHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARS 414

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+++L RL  L R  I +
Sbjct: 415 GLMD--------------------------LLDIDEIQATAILDMQLRRLAALERQRILD 448

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L   I +   IL S  R   II+ EL  + ++    RRT+ V    D+  ED I  
Sbjct: 449 ELAELEDRIADLQAILDSPERQRQIIRDELAEIVEKYGDDRRTKFVANDGDVSMEDLIAE 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR    +YR+QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 509 EEVVVTITRTGYAKRTKSDLYRSQRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNK 568

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG  + NIL+    E+I  +M   +        Y+V AT +G
Sbjct: 569 GRVYRAKAYELPEANRTARGAHVANILAFQPDEKIAQVMQIKDY---GVAPYLVLATANG 625

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ +L+DF      G IA+ L   DE++       + D+LL T+    +RF      +
Sbjct: 626 QVKKTRLTDFDSPRSGGVIAINLRESDELVGAALIDPDQDLLLVTRKAMSIRFKADDATL 685

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRGI+L+  D ++SM +V                                 
Sbjct: 686 RPMGRATEGVRGIALSPDDSLLSMIVV--------------------------------- 712

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                +   +L  +E+GF KRT   ++    R GKG+   D   
Sbjct: 713 --------------------EEGVDVLVATERGFAKRTGIENYPAQGRGGKGVLTAD--P 750

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVS 893
            +  G LV    V   D++  ++  G +IR PVN +R    RAT GV + +  +D  +V+
Sbjct: 751 KSRKGNLVGALSVRLGDELYAITSGGGVIRTPVNGVRHNKDRATMGVKLMNLPEDVSIVA 810

Query: 894 VERIRESEI 902
           + R  +++ 
Sbjct: 811 IARTTDNDE 819


>gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 861

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/907 (36%), Positives = 515/907 (56%), Gaps = 91/907 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SDE     ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   
Sbjct: 2   SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + +VK +R   + MG++HPHG++AIYD L R+AQ WS+R  +++GQGNFGS   D PAA
Sbjct: 62  ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC+L   A  ++ D+ +DTV+F+PNYDG   EP VL +R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL E+ +    +++NPD      L+A ME ++GPDFPT A+I+G  GIK+AY T
Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGS+ +RGV+ IE+    R  IV+TE+PY VN   ++  IA+ +   ++   + + DE 
Sbjct: 242 GRGSVKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ LKR A   V+LN L+++++L+S F VNM+++    P    L  +L  + 
Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ LN A  RAH+L GL  A+  LDEV+ +IR S   E AR+ LM+   
Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E Q + IL+++L +L  L R  I +EL  L  
Sbjct: 418 -----------------------LLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEE 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   I++ EL  + D+    RRT++V    D+ DED I +E++VVT+
Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR  +  YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ + N+L    GE I  ++     +S  +  Y+V AT+ G V++++L
Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQI---QSYEDEPYLVLATRKGRVKKSRL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           +D+     +G IA+ L+  D ++     + E+D+LL ++ GQ +RF  +   +   GR +
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRAT 691

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+     D+++SM +    D                                    
Sbjct: 692 AGVKGMRFKDDDELLSMCVTSDGD------------------------------------ 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                            ++L  +E G+GKRT+  ++    R G G+         + G L
Sbjct: 716 -----------------YLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQP--KRGKL 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +    VN+ D+I+ ++  G +IR  V++IR +SR+T GV + +      + +++R  E  
Sbjct: 757 IGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDRNVEDS 816

Query: 902 IVDEAES 908
             ++AE+
Sbjct: 817 GEEQAEA 823


>gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4]
 gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4]
          Length = 852

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 561/906 (61%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A+                                        
Sbjct: 695 DEDGGDEVIGMICIKDPEAES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 EAESTE 910
           E  + +
Sbjct: 822 ENSNAD 827



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 105/253 (41%), Gaps = 11/253 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++  
Sbjct: 608 FINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDKVIEVRMTNGDNEIIIA 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     + +    A G      L  + G+ +  ++   + E+      ++  +
Sbjct: 666 NRNGRAIRFHESAVRVMGRTATGVR-GMTLDEDGGDEVIGMICIKDPEAES----IMVVS 720

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+ + NR GK    L+  D+   ++++++ T  ND+++  K G  +R  
Sbjct: 721 EQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLK 780

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +R+   R + GVR I+L K +  I     + ++ +                   G  
Sbjct: 781 VAEVRIMG-RATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSI 839

Query: 770 EEITSLKNDSSVE 782
                +   +S E
Sbjct: 840 TNPDLIAEANSEE 852


>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 850

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/901 (39%), Positives = 532/901 (59%), Gaps = 62/901 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTE 124

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL     + LL D+  +TVDF  N+DGS QEPVVL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++DG VA+I NPD+    L   I GPDFPTG  ILGR GI+ AY TGRGSI +R
Sbjct: 185 PHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        DR+ I++TE+PYQ NKAA++EKIA+LV +++I  I+D+RDESDR G
Sbjct: 245 GVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A   V+LN LY+ T LQS F  NM+AL   +P   TL   L+ F+ FR E
Sbjct: 305 IRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + +  +A+  L+Q        
Sbjct: 365 VITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQN------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L  + I+ E   L  +I + 
Sbjct: 418 -------------------FGLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ + R+  II++EL  +K    TPRRT I +   ++ + D I  E  ++ V+  GY
Sbjct: 459 QDILAKKERIDSIIEEELQQIKTIHATPRRTHIEQREGEIAETDLIANEQALILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + +Q R  +G++G  M+++D +        H SVLFF+  G VY    + +P
Sbjct: 519 IKRMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ARG  ++ +L + +GE+IT+++   E      + Y++  T+ G +++  L+ F  
Sbjct: 579 TGSRTARGVPIVQLLEIPKGEKITSVVAVSE---FSEDNYLIMLTQKGFIKKTALAAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V    +E+ +++ ++ G  + F   + ++ + GR + GV+ 
Sbjct: 636 IRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  GD++ISM I+              +       +                      
Sbjct: 696 MKLRSGDELISMDILPSQIVAQIAESNEEETEDESEEI---------------------- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                E+     ++L ++  G GKR      R+ NR+G G+R     K N+   L A+  
Sbjct: 734 ---NPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKND--KLAALHV 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN +++ ++++++G +IR  V+ I   SR+  G+ +    +D+ + +V  +  S+  +  
Sbjct: 789 VNPHEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAEESE 848

Query: 907 E 907
           +
Sbjct: 849 D 849


>gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria
           bacterium BBFL7]
 gi|89516338|gb|EAS18999.1| DNA  gyrase (type IIA topoisomerase),  subunit A [Flavobacteria
           bacterium BBFL7]
          Length = 840

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/900 (40%), Positives = 556/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   DGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGDPPAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG VA IDN DI++D L+  ++ PDFPTG +I G  G+K+A  TGRG + IR
Sbjct: 183 PHNLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIYGYDGVKDAMHTGRGRVKIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E+    RE I+V E+PYQVNKA M++K A+L+ EK++  I+ +RDESDR G R+V
Sbjct: 243 GRVRLEEVK-GRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  ++++N+LY++T+LQS FSVN +AL   +P+   +  ++  FV  R +VVVR
Sbjct: 302 YILKRDAIPNIVINKLYKHTALQSSFSVNNIALVKGRPQLLNVKEMIHYFVEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA +RAH+L GL IA  N+DEV+ +IR S N E AR +L++R           
Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +RNE N L   I +  DIL
Sbjct: 411 ---------------FELSEIQARAIVEMRLRQLTGLEQDKLRNEYNDLIATITDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL+ +K++    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMDIIKEELIEIKEKYGDERRSQIEYAGGDLSIEDMIADEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P++ Y+ Q RGG G+     RDEDF+ D+F+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PITEYKTQNRGGVGQKASTTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q + +  ++   +  DE   N+ YV+  TK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDNVKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D +L  +  T ++ ++L  K G+ +RF  +  R    RN+ GVRGI L
Sbjct: 636 TNGINAITIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRAMG-RNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V   D++                                         
Sbjct: 695 ADDNDEVIGMVAVNDMDSN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R +NR GKG++   V++  + G LVA+  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTE--KTGGLVALKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D+D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V ++ + E  +  E 
Sbjct: 761 DDDGLMIINKSGVAIRIDVKNLRVMGRATQGVRLINLKGNDSIAAVAKVAQEEDSEINED 820



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 102/244 (41%), Gaps = 13/244 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+  L  Y   R    G + + +R+ D + +  + +  + V+
Sbjct: 606 EEYINSHYVIMCTKKGVVKKTSLEQYSRPR--TNGINAITIREGDTLLEAKLTTGDSHVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +    +       A G  +  I   +  + +  ++   + +S+     ++ 
Sbjct: 664 LGLKSGKAIRFDEAKTRAMGRNASG--VRGIRLADDNDEVIGMVAVNDMDSN-----ILV 716

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R+ L D+ + NR GK    +   ++   +++++  T ++ +++  K G  +R
Sbjct: 717 VSEKGYGKRSSLDDYRETNRGGKGVKTISVTEKTGGLVALKNVTDDDGLMIINKSGVAIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +RV   R + GVR I+L   D + ++A V   +         +  ++     ++ 
Sbjct: 777 IDVKNLRVMG-RATQGVRLINLKGNDSIAAVAKVAQEEDSEINEDGSVADLNTDGMTVAK 835

Query: 768 DTEE 771
           D  E
Sbjct: 836 DDSE 839


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/853 (42%), Positives = 531/853 (62%), Gaps = 20/853 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C A++ +P++ ++ L+E++  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNINEVLDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E    G R+ ++V E+PYQVNK   +EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHVEDLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG  A+V+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 302 RVVIELKRGEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR R H+L GLA+A+AN+DE++ II+ +P P  A+  LM ++WN+  ++
Sbjct: 362 ITRRTVFELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +                  LS++Q + IL++RL RLTGL +D + +E   +
Sbjct: 422 EMLKRAAMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL++ +R+  II  EL  ++ +    RR+ IV    D+  ED I  +D+VV
Sbjct: 482 MDIIADLLDILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 542 TLSHTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS   RGK ++N+  L +GE+I  I+   E +    N ++  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFDE---NHFIFMATSLGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF    +SG IA+ LD  D ++  E     ND++L +  G+ V F    +R    R 
Sbjct: 659 PLSDFANPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMG-RA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKND 778
           + GVRG+ LA   QV+S+ I   AD D    +   ++   +R +++    +   T     
Sbjct: 718 TRGVRGMKLADNQQVLSLLI---ADNDQQSVLVATENGYGKRTVLADFRHSGRGTQGVKA 774

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            ++          +L  ++  I+ ++  G   RT   + R   R+ +G+   ++ +  ++
Sbjct: 775 IAISERNGLVVAAKLVNEDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKL 834

Query: 839 GALVAVFPVNDND 851
             L     V  +D
Sbjct: 835 SGL--EKIVESDD 845



 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 106/262 (40%), Gaps = 14/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   + LG VK+ PLS +   R+   G   + + + DF+    
Sbjct: 629 EKINAILSVKEFDENHFIFMATSLGTVKKTPLSDFANPRKS--GIIAINLDEGDFLIGAE 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I +    V+  S+ G         +       RG   +  + L   +++ +++    D+ 
Sbjct: 687 ITNGANDVILVSNGGKAVWFTEDDVRSMGRATRG---VRGMKLADNQQVLSLLIADNDQQ 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           S     V+ AT++G  +R  L+DF    R   G  A+ +      +++ +   ++++I+L
Sbjct: 744 S-----VLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +  IR    R + GV  I+L +G+++  +  ++ +D    E        
Sbjct: 799 ITTGGVLIRTRVKEIRELG-RATQGVTLINLGEGEKLSGLEKIVESDDPESEVDADATVE 857

Query: 759 SAQRRLISGDTEEITSLKNDSS 780
                  + + E  T+   ++ 
Sbjct: 858 LDASIDSNSEVESDTNDNAEAD 879


>gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2]
 gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 858

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   + +                                        
Sbjct: 695 DNDGQDEVVGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
 gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
          Length = 890

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/842 (45%), Positives = 535/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L  F
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+     +DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L + DQV+S+ +      +L    +   +   +     + R   G      S +N  
Sbjct: 722 GMKLPEDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGP 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V     EE           ++ +++ G   RT   +     R+ +G+     ++   + 
Sbjct: 782 VVGAVQVEE--------GDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVV 833

Query: 840 AL 841
            L
Sbjct: 834 GL 835



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 174/451 (38%), Gaps = 41/451 (9%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R        RR  
Sbjct: 462 LHRLTGLEHEKILDEYKALLEEIAELMHILASTERLMEVIREELEAVR--DIYGDERRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAAVHDIDMEELIAQED----VVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    + +   +K  +L    RT     IV        E +
Sbjct: 575 ----DYIERLLVANTHDNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEEGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +        E  +   +  G VK+  L  +   R    G   V +RD+D +  + I  
Sbjct: 631 TAILPVSEFSNEKFIFMATGDGTVKKTSLDQFANVR--ANGLIAVNLRDDDSLIGVDITD 688

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            ++ ++ FS  G V +    ++      A G   +  + L + +++ +++         N
Sbjct: 689 GNSDIMLFSKSGKVVRFNEDKVRPMGRTASG---VRGMKLPEDDQVVSLIV------PSN 739

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
              ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T 
Sbjct: 740 EGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITD 799

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  ++ +     RN+ GV  I  A+ + V+ +  +   + +  E +   +   A 
Sbjct: 800 AGTLVRTRVAEVSQVG-RNTQGVTLIRTAEDENVVGLQRI--DEVEEAEIVEGEETEEAN 856

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQE 792
              ++ +T  ++    + + + + SE   ++
Sbjct: 857 ADAVNAETAVVSESSEEQASDASGSESDSEQ 887


>gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
 gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
          Length = 825

 Score =  761 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/894 (41%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D     +DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  IL  ++  ++EV+VR
Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  +K +    RRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+    D+  +++ Y+ F T+ G V+R  +S F  I +
Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDD--FHDKYLFFTTRQGVVKRTSVSAFGNIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T LG  VRF  SA+R    R + GV+G++L 
Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNMG-RLATGVKGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI    +                                                 
Sbjct: 698 KNDYVIGADHI------------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + +LT++EKG+GK+T + ++    R GKGI+  +++  N  G L  +  VND+
Sbjct: 709 ----ADNRNVLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + I++++D G +IR  V +I    R+  GV +    ++ ++V+   + +SE+++
Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALV-KSEVIE 815


>gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159]
 gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159]
          Length = 825

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/894 (41%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  IL  ++  ++EV+VR
Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  +K +    RRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+    D+  +++ Y+ F T+ G V+R  +S F  I +
Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDD--FHDKYLFFTTRQGVVKRTSVSAFGNIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T LG  VRF  SA+R    R + GV+G++L 
Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNMG-RLATGVKGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI    +                                                 
Sbjct: 698 KNDYVIGADHI------------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + +LT++EKG+GK+T + ++    R GKGI+  +++  N  G L  +  VND+
Sbjct: 709 ----ADSRNVLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + I++++D G +IR  V +I    R+  GV +    ++ ++V+   + +SE+++
Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALV-KSEVIE 815


>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
 gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
          Length = 895

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/842 (45%), Positives = 536/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L  F
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+     +DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L + DQV+S+ +      +L    +   +   +     + R   G      S +N  
Sbjct: 722 GMKLPEDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGP 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V     EE           ++ +++ G   RT   +     R+ +G+     ++   + 
Sbjct: 782 VVGAVQVEE--------GDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVV 833

Query: 840 AL 841
            L
Sbjct: 834 GL 835



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 172/464 (37%), Gaps = 46/464 (9%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E +  +R        RR  
Sbjct: 462 LHRLTGLEHEKILDEYKALLEEIAELMHILASTERLMEVIREELEAVR--DIYGDERRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D+++LI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 ITAAVHDIDMEELIAQED----VVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    + +   +K  +L    RT     IV        E +
Sbjct: 575 ----DYIERLLVANTHDNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEEGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +        E  +   +  G VK+  L  +   R    G   V +RD+D +  + I  
Sbjct: 631 TAILPVSEFSNEKFIFMATGDGTVKKTSLDQFANVR--ANGLIAVNLRDDDSLIGVDITD 688

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            ++ ++ FS  G V +    ++      A G   +  + L + +++ +++         N
Sbjct: 689 GNSDIMLFSKSGKVVRFNEDKVRPMGRTASG---VRGMKLPEDDQVVSLIV------PSN 739

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
              ++  T++G  +R +L+++    R+  G +++K+      ++      + +++++ T 
Sbjct: 740 EGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITD 799

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  ++ +     RN+ GV  I  A+ + V+ +  +       DE          +
Sbjct: 800 AGTLVRTRVAEVSQVG-RNTQGVTLIRTAEDENVVGLQRI-------DEVEEAEIVEGEE 851

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               + D     ++  + +V    SEE+  +    E      +E
Sbjct: 852 TEEANADAVNAETVNAEGTVVSESSEEQASDASDSESDSEQDTE 895


>gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
          Length = 852

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 560/906 (61%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A+                                        
Sbjct: 695 DEDGGDEVIGMICIKDPEAES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 EAESTE 910
           E  + +
Sbjct: 822 ENSNAD 827



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 105/253 (41%), Gaps = 11/253 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++  
Sbjct: 608 FINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDKVIEVRMTNGDNEIIIA 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     + +    A G      L  + G+ +  ++   + E+      ++  +
Sbjct: 666 NRNGRAIRFHESAVRVMGRTATGVR-GMTLDEDGGDEVIGMICIKDPEAES----IMVVS 720

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+ + NR GK    L+  D+   ++++++ T  ND+++  K G  +R  
Sbjct: 721 EQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLK 780

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +R+   R + GVR I+L K +  I     + ++ +                   G  
Sbjct: 781 VAEVRIMG-RATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSI 839

Query: 770 EEITSLKNDSSVE 782
                +   +S E
Sbjct: 840 TNPDLIAEANSEE 852


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/905 (40%), Positives = 548/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R    R + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMG-RTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  A                                                 
Sbjct: 694 LREEDYVVGAA------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  ++
Sbjct: 705 ----LMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTIS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SEIVDE 905
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +      + V+E
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818

Query: 906 AESTE 910
             S E
Sbjct: 819 QGSEE 823


>gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
 gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
          Length = 831

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/893 (41%), Positives = 549/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +EKRI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+     +    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAK--KEDILDKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR    R++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                                 
Sbjct: 693 EEDWVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 706 ------KQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+   ++  +  
Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 108/259 (41%), Gaps = 23/259 (8%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RR +        R+  +   L + D +  V    + ++  +  +     RF +S      
Sbjct: 361 RRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSE----- 415

Query: 718 GRNSVGVRGISLA-----KGDQVIS----MAIVLHADADYDERICYMKHMSAQRRLISGD 768
            R S  +  + L      + D++ S    +  ++   AD   R   ++ +   +  +   
Sbjct: 416 -RQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAII--KEEMEEI 472

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  + +    + G +     ++L  +E  ++T+S  G+ KR +  +FR   R G+G++
Sbjct: 473 KRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
            T V+  + +  LV+    + +D ++  ++ G + R+   EI    RA KG   + +   
Sbjct: 533 GTGVNDDDFVRELVST---STHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKL 589

Query: 886 AKDERVVSVERIRESEIVD 904
              E + ++   ++ +I+D
Sbjct: 590 DDGETIQTIINAKKEDILD 608


>gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
 gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
          Length = 858

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   + +                                        
Sbjct: 695 DNDGQDEVVGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAGE 825


>gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 879

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/855 (44%), Positives = 543/855 (63%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P  A+  L+ ++W    +  +++
Sbjct: 366 TIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI
Sbjct: 426 RAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI+L   D+V+S+ I      +L    +   +   +     + R   G      S +N 
Sbjct: 722 RGINLQGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     +   Q        I+ +++ G   RT   +  I  R+ +G+     ++   +
Sbjct: 782 KVVGAVQVDAADQ--------IMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHV 833

Query: 839 GALVAVFPVNDNDQI 853
             L  V    +++++
Sbjct: 834 VGLQRVAEPVEDEEL 848


>gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
          Length = 850

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 538/902 (59%), Gaps = 62/902 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTE 124

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL     + LL D+  +TVDF  N+DGS QEPVVL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++DG VA+I NPD+    L   I GPDFPTG  ILGR GI+ AY TGRGSI +R
Sbjct: 185 PHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        DR+ I++TE+PYQ NKAA++EKIA+LV +++I  I+D+RDESDR G
Sbjct: 245 GVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A   V+LN LY+ T LQS F  NM+AL   +P   TL   L+ F+ FR E
Sbjct: 305 IRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + +  +A+  L+Q        
Sbjct: 365 VITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQN------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L  + I+ E   L  +I + 
Sbjct: 418 -------------------FGLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ + R+  II++EL  +K    TPRR+ I +   ++ + D I  E  ++ V+  GY
Sbjct: 459 QDILAKKERIDSIIEEELQQIKTIHATPRRSHIEQREGEIAETDLIANEQALILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + +Q R  +G++G  M+++D +        H SVLFF+  G VY    + +P
Sbjct: 519 IKRMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ARG  ++ +L + +GE+IT+++   E      + Y++  T+ G +++  L+ F  
Sbjct: 579 TGSRTARGVPIVQLLEIPKGEKITSVVAVSE---FSEDNYLIMLTQKGFIKKTALAAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L+  D++  V    +E+ +++ ++ G  + F   + ++ + GR + GV+ 
Sbjct: 636 IRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  GD++ISM I+                                  +++     + S
Sbjct: 696 MKLRSGDELISMDILPSQ-------------------------IVAQIAESNQEETEDES 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           EE   E+     ++L ++  G GKR      R+ NR+G G+R     K N+   L A+  
Sbjct: 731 EEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKND--KLAALHV 788

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN N++ ++++++G +IR  V+ I   SR+  G+ +    +D+ + +V  +  S+  +  
Sbjct: 789 VNPNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAEESE 848

Query: 907 ES 908
           +S
Sbjct: 849 DS 850


>gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302]
 gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302]
          Length = 867

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/913 (40%), Positives = 545/913 (59%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGS+
Sbjct: 57  LGIGNTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G  G++ A
Sbjct: 177 GIAVGMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  + IE +    ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  
Sbjct: 237 YETGRGRIVMRAKAEIE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DESGRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     IL        ++K EL  VKD+    RRT I     +   ED    + +V+
Sbjct: 450 ERQIAYFQQILDDPELCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH+GY+KR PLS +  Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHMGYIKRTPLSEFHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++   + I  I+      DE+  N+ YV+FATK+G V+
Sbjct: 570 LKCFEIPEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR    
Sbjct: 630 KTSLEAYSRPRANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMG- 688

Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG+ L    D+V+ M  V  A+ +                              
Sbjct: 689 RTATGVRGMRLDGSDDEVVGMVTVNEAETE------------------------------ 718

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE+G+GKR+   D+R++NR GKG++   +++  +
Sbjct: 719 ---------------------TVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LV++  V D + +++++  G +IR+ V ++R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVSIKNVTDENDLMIINKSGIVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEATVEEE 828



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 114/281 (40%), Gaps = 21/281 (7%)

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R T + +                V+  +  G VK+  L  Y   R    G   + + D D
Sbjct: 604 RLTTLTDE--------TFNNSHYVIFATKNGTVKKTSLEAYSRPR--ANGVIAINIADGD 653

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            V D+ + +    ++  +  G   +     +      A G  +  +      + +  ++ 
Sbjct: 654 EVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATG--VRGMRLDGSDDEVVGMVT 711

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQ 692
             E E+      V+  ++ G  +R+++ D+   NR GK    L   +    ++S++  T 
Sbjct: 712 VNEAETE----TVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTD 767

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDER 751
           END+++  K G  +R  ++ +RV   R + GVR I+LAK + VI S+  V+ ++ +    
Sbjct: 768 ENDLMIINKSGIVIRLAVADVRVMG-RATQGVRLINLAKKNDVIASVCKVMSSELEATVE 826

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  + +   I  DT+   S   + +   +  ++  +E
Sbjct: 827 EESRAQWANKSEEIKKDTQAEASESAEDAPFVDFEDDNKEE 867


>gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
 gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
          Length = 852

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/906 (40%), Positives = 561/906 (61%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL E++D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A+                                        
Sbjct: 695 DEDGGDEVIGMICIKDPEAES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 EAESTE 910
           E  + +
Sbjct: 822 ENSNAD 827



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 105/253 (41%), Gaps = 11/253 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++  
Sbjct: 608 FINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDKVIEVRMTNGDNEIIIA 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     + +    A G      L  + G+ +  ++   + E+      ++  +
Sbjct: 666 NRNGRAIRFHESAVRVMGRTATGVR-GMTLDEDGGDEVIGMICIKDPEAES----IMVVS 720

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+ + NR GK    L+  D+   ++++++ T  ND+++  K G  +R  
Sbjct: 721 EQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLK 780

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +R+   R + GVR I+L K +  I     + ++ +                   G  
Sbjct: 781 VAEVRIMG-RATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSI 839

Query: 770 EEITSLKNDSSVE 782
                +   +S E
Sbjct: 840 TNPDLIAEANSEE 852


>gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
 gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
          Length = 873

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/913 (41%), Positives = 552/913 (60%), Gaps = 74/913 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  +   +  V +++EM++ ++ YA++VI+ RA+PD+RDGLKP  RRILF M ++G+  N
Sbjct: 17  DSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPN 76

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           +K++KCA+I GE MG +HPHG+ AIY  L  MAQ W++R +LI+GQGNFGS++GDPPAA 
Sbjct: 77  RKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAM 136

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  A   L+ D+ KDTVDF PNYD +  EP V  A +PN++VNG  GIAVGMAT
Sbjct: 137 RYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMAT 196

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +DG VA+ID+P +  + L+E I+GPDFPTG VILGR GI N + TGRGS+
Sbjct: 197 NIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVILGREGIVNYFTTGRGSL 256

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG  H+E+  G +  IV+ EIPY VN+A+++EKI ELV +K I +IAD+RDESD    
Sbjct: 257 KVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDENTR 316

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            VVIELKR A A V+ N LYR+T LQ+ F+VNMVA++  +P+   L  +L  ++  R EV
Sbjct: 317 -VVIELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLRPKSLNLKELLSCYLDHRHEV 375

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ LNKA +RA VL G  IA++ L E + IIR S N + ARR+L+ R ++   I+
Sbjct: 376 VTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIE 435

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L   +D    T G+     LS  Q  AIL+LRL +LTGL R+ I  E   L  +IK+  
Sbjct: 436 SLGIPLDGQRMTEGAM--YRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFR 493

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S  ++  I+K ELL +K++   PR+T+I+    ++  ED +  + +V+T++H G++
Sbjct: 494 LILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVITLTHNGFI 553

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRD------EDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KR  L  YR+QRRGG+G  G+  +D      +DFV  LF  STH  +LFF++ G VY ++
Sbjct: 554 KRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVYIQR 613

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-------ESSWN-NLYVVFATKH 654
           V+ +P     ++GK + +IL L   E I +++    +       ESSW+   Y+ F T  
Sbjct: 614 VYEIPEKERASKGKNIASILELKPTEEIASMLRIVANTQASDGRESSWDKEGYIFFCTLK 673

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  +S+F  I + G  A+ ++  D+++       + +I+L TK GQ +RF  S +R
Sbjct: 674 GKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDVR 733

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               RN+ GV GI L  GD+V+ M+IV H                               
Sbjct: 734 PMG-RNAAGVIGIDLQPGDEVVGMSIVDH------------------------------- 761

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L VSEKG GKRTS  ++R   R G+G+     S 
Sbjct: 762 ----------------------RATLLVVSEKGMGKRTSFEEYRKQKRGGQGVITMKTS- 798

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ G +V    V D+D++++++ KG +IR+ V ++R   R T+GV +     +++V S+
Sbjct: 799 -DKTGKVVKAITVLDDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTSI 857

Query: 895 ER-IRESEIVDEA 906
            R I + E  +E 
Sbjct: 858 ARIIPDKEDNEEP 870


>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
 gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
          Length = 852

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/898 (41%), Positives = 549/898 (61%), Gaps = 91/898 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   SI DE+++S+L+YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G++ N+ Y K 
Sbjct: 8   NIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYRKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEV+GKYHPHG+AA+YD L R+AQD+S+R  L++GQGNFGSVDGDP AA RYTE R
Sbjct: 68  ATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTEAR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L D+  DTV+F PN+D S +EP VL AR+PN+LVNG  GIAVGMAT IP HN
Sbjct: 128 LTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  VA+I++P++D + L   I+GPDFPTG +++G  GI+ A  TGRGS+ +R  +
Sbjct: 188 LGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTRGIREAIRTGRGSVRVRAKA 247

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+  G+R QIVVTE+PYQVNKA +L+KIAELV++++I DIADLRDESDR G R+VIEL
Sbjct: 248 HTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMRIVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A   V+LN L+++T +Q  F VN+VAL    P+  +    L+ ++A + EVV RRT+
Sbjct: 308 KREAVPKVVLNNLFKHTQMQQSFGVNLVALVDGVPKTLSYKEALRHYIAHQFEVVTRRTR 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +AR RAH+L GL IA++NLDEVV  IR S N ETARR L++R              
Sbjct: 368 HELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKR-------------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL+LRL RLT L R  +  +   L  +I+    +L+  
Sbjct: 414 ------------FRLSERQAQAILDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           S++ GII++ELL +K      RRT I  +   + E ED I  E+MV+++SH GY+K VP+
Sbjct: 462 SKVYGIIREELLEIKAAYADERRTAITAQEGAEFEVEDLIAEEEMVISISHEGYLKSVPI 521

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +R Q RGG G +G+ +++ D++  LFI +TH  +LFF++ G VY+ KV +LP     A
Sbjct: 522 GSFRKQGRGGVGVAGMELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAA 581

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-G 672
           +G+ + N+L L  GERI  ++   + + +    Y++FAT+ G V++    D+    ++ G
Sbjct: 582 KGRHVANLLPLAPGERIAAVISTRDFDEAE---YLLFATRRGMVKKTPFRDYNTPLKNEG 638

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+KL   DE+++V   + E++++  T+ G+ +RF    +R    R + GV+GI+L   
Sbjct: 639 IIAIKLAGGDELIAVRHASDEDEVVFVTRDGKGLRFRQGDVRPMG-RATAGVKGITLKGD 697

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++SM +V    AD                                             
Sbjct: 698 DALLSMDVVSDEAAD--------------------------------------------- 712

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-D 851
                  +  V+EKGFGKRT+  +FR   R G+G+ A  V+   E G +  V  V     
Sbjct: 713 -------LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVN--GERGKIAGVQVVRPGLH 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR----ESEIVDE 905
           ++++VS+ GT IR+  + +    RA +GV + +  + + V ++ ++     E    DE
Sbjct: 764 ELVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKVVSSRGEPGEPDE 821



 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 103/263 (39%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         + ++  +  G VK+ P   Y    +  +G   + +   D +  + 
Sbjct: 596 ERIAAVISTRDFDEAEYLLFATRRGMVKKTPFRDYNTPLKN-EGIIAIKLAGGDELIAVR 654

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             S    V+F +  G   +   +R     P  R  A +  ++L   + + ++    ++ +
Sbjct: 655 HASDEDEVVFVTRDGKGLR---FRQGDVRPMGRATAGVKGITLKGDDALLSMDVVSDEAA 711

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLD-SRDEILSVETCTQE-NDIL 697
                 +   T+ G  +R  +S+F    R G   IAMK++  R +I  V+      ++++
Sbjct: 712 D-----LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVNGERGKIAGVQVVRPGLHELV 766

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + + +G  +R   S      GR + GVR ++L +GD V ++A V+ +  +  E       
Sbjct: 767 IVSNMGTTIRID-SDSVPRQGRAAQGVRVMNLREGDSVSALAKVVSSRGEPGEPDELALD 825

Query: 758 MSAQRRLISGDTEEITSLKNDSS 780
              +       T    +   +  
Sbjct: 826 GITEEEAERSATGSRPAPAANGG 848


>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 874

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/901 (39%), Positives = 516/901 (57%), Gaps = 77/901 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E   I  V I ++++ +YL Y+++VI+ RA+PD+RDGLKP  RRI++ M ++ +     
Sbjct: 2   SETTNIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSH 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I+G+  G YHPHG   +Y  L R+AQ W +R  LIEGQGNFGS+DGDPPAA RY
Sbjct: 62  FRKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RLQK    +L +L KDTV+FR NYD + QEP V  AR+PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GEV D  +A+IDNPD+    L+E I+GPDFPTG  ILG  GI+  + TGRG I++
Sbjct: 182 PPHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    D EQI++  IPYQ++ + ++E++ ELV++K+I  I+D+RDES R G R+
Sbjct: 242 RGETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR   A V+ N LY+YT LQS F V  + L    P+   +  +L+ F+ FR EVV+
Sbjct: 302 VIQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGVPQVVNMKEMLQNFIDFRHEVVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A++R H+L GL IA+ NLDEV+ +IR S  P  A   L ++          
Sbjct: 362 RRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLTGL RD I  E   L I I    ++
Sbjct: 412 ----------------FGLSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTEL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549
           +  +   + +IK+E   ++D+    R T I+         ED I  E +VVT++H GYVK
Sbjct: 456 VEHKELRMNLIKEETAEIRDKFADKRLTTIIPAPAGSFNMEDLIADEMVVVTITHDGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y+ Q RGGKG S   +++EDF+  LF+ STH+ +L F+  G  Y  KV+ +P  
Sbjct: 516 RLPVDTYKVQARGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARGKA++N++ L +G+RI   +   +     N   +V  T++G V++  L+ F    
Sbjct: 576 SRTARGKAIVNLVKLAEGDRIKAFVTLKDFHPEQN---IVMCTRNGLVKKTPLTAFSHPR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G  A+KL   DE++    C   +DILL T  G+C RF  S IR    R S GV+GI L
Sbjct: 633 SIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSM-RRFSQGVKGIRL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD VISM I    D                                           +
Sbjct: 692 RNGDYVISMTIATAQD-------------------------------------------Q 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +  K     IL +SEKG+GKR+    + ++ R   G+     ++ N  G L A+  V D
Sbjct: 709 LENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERN--GYLAALMLVRD 766

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D +++++  G +IR  V+EI +  R T GV + + A ++ V  +  +  SE  +E+   
Sbjct: 767 DDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVVRDISLV-HSEPDEESLDK 825

Query: 910 E 910
           E
Sbjct: 826 E 826



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 104/245 (42%), Gaps = 8/245 (3%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           + +           E  +V  +  G VK+ PL+ +   R    G   + +R+ D + D  
Sbjct: 594 DRIKAFVTLKDFHPEQNIVMCTRNGLVKKTPLTAFSHPRS--IGIKAIKLREGDELIDAR 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      +L  +  G   +     +      ++G   I + + +    +T      + E+
Sbjct: 652 ICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDYVISMTIATAQDQLEN 711

Query: 642 SWNNLYVVFA-TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
              N   + A ++ G  +R+ +S +    R     + L + +    + ++     ++D++
Sbjct: 712 GKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAALMLVRDDDDLM 771

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T+ G  +R  +S I V   RN++GVR I+LA  D V  +++V H++ D +     ++ 
Sbjct: 772 IITQGGMIIRQRVSEISVVG-RNTLGVRLINLAPNDVVRDISLV-HSEPDEESLDKEVET 829

Query: 758 MSAQR 762
           + A+ 
Sbjct: 830 LKAKP 834


>gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 861

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/907 (36%), Positives = 515/907 (56%), Gaps = 91/907 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SDE     ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   
Sbjct: 2   SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + +VK +R   + MG++HPHG++AIYD L R+AQ WS+R  +++GQGNFGS   D PAA
Sbjct: 62  ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC+L   A  ++ D+ +DTV+F+PNYDG   EP VL +R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL E+ +    +++NPD      L+A ME ++GPDFPT A+I+G  GIK+AY T
Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +RGV+ IE+    R  IV+TE+PY VN   ++  IA+ +   ++   + + DE 
Sbjct: 242 GRGSIKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ LKR A   V+LN L+++++L+S F VNM+++    P    L  +L  + 
Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ LN A  RAH+L GL  A+  LDEV+ +IR S   E AR+ LM+   
Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E Q + IL+++L +L  L R  I +EL  L  
Sbjct: 418 -----------------------LLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEN 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   I++ EL  + D+    RRT++V    D+ DED I +E++VVT+
Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR  +  YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ + N+L    GE I  ++     +S  +  Y+V AT+ G V++++L
Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQI---QSYEDEPYLVLATRKGRVKKSRL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           +D+     +G IA+ L+  D ++     + E+D+LL ++ GQ +RF  +   +   GR +
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPMGRAT 691

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+     D+++SM +    D                                    
Sbjct: 692 AGVKGMRFKDDDELLSMCVTSDGD------------------------------------ 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                            ++L  +E G+GKRT+  ++    R G G+         + G L
Sbjct: 716 -----------------YLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQP--KRGKL 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +    VN+ D+I+ ++  G +IR  V++IR +SR+T GV + +      + +++R  E  
Sbjct: 757 IGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDRNVEDS 816

Query: 902 IVDEAES 908
             ++AE+
Sbjct: 817 GEEQAEA 823


>gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10]
 gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10]
          Length = 840

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/897 (41%), Positives = 544/897 (60%), Gaps = 91/897 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE  E+ I  + I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K Y K     GE +  YHPHG+AA+YD+L RMAQD+SLR  L++G GNFGS DGD  AA
Sbjct: 62  EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGE +DG  AV+DNP+I +D LM+ I+GPDFPT A I+G+ GI+ A+ TGRG 
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKRGIREAFKTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306
           +V+R  + IE+  G+R +I++TEIPY VNKA ++EKIA+LV++KRI  I+ ++DES R+ 
Sbjct: 242 LVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGREE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAF 361
             R+VI+LKR A+ +V+LNQLY+ T LQ  FSVNMVA+       Y+P    L  I+  +
Sbjct: 302 PVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDYY 361

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A +E+V+ RRTK+ L+KA  RAH+L GL  A+ +LDEV++ IR S     A+  L +R 
Sbjct: 362 IAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSER- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                       S+ Q +AI+++RL RLTGL R+ +  E N L 
Sbjct: 421 -------------------------FGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELL 455

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +IK   D+L++   +  IIK EL  +K++    RRT+I     +++ ED I  E+ V+T
Sbjct: 456 EKIKYYKDVLANEILVHQIIKDELSVIKNKYADERRTKIEIDEDEIDIEDLIQEEESVIT 515

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++H GY+KR+P   Y++QRRGGKG  G+  R+EDFV +LF+ STH  ++FF++ G VY+ 
Sbjct: 516 MTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRL 575

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P    QA+G A++N+L L+  E++TT++P  E +     LY++ ATK+G V++  
Sbjct: 576 KAYEIPESGRQAKGTAIVNLLQLDGDEKVTTVIPIQEYKE---GLYLIMATKNGLVKKTD 632

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L ++  I + G  A+ L   D+++ V+      DI+L+T  G  +RF  +  R    R S
Sbjct: 633 LMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPIG-RVS 691

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+GI L +GD VI M                                           
Sbjct: 692 QGVKGIELDEGDFVIGM------------------------------------------- 708

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                     E+      +L V+E GFGKRT   ++++  R GKG+    +++  + G  
Sbjct: 709 ----------EVCTDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGKS 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +  V++ D I+L+S  G++IR+ V+EI I  RAT+GV +   ++   VVSV R+ 
Sbjct: 757 IGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLMRMSEGNNVVSVARMV 813


>gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
 gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
          Length = 878

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/842 (45%), Positives = 536/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N +I +D LM  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I+ EL+ V+D     RRT I   + D++ ED I +ED+VVT+S  
Sbjct: 486 ELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSRE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVFQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILPVSEY---SEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +G IA+ L   D ++ V+     ++I+L +K G+ VRF    +R    R + GVR
Sbjct: 663 AKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L+  DQV+S+ +      +L    +   +   +    A+ R   G      S +N S
Sbjct: 722 GMKLSGEDQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERNGS 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V    +E+            + +++ G   RT   +     R+ +G+     S+   + 
Sbjct: 782 VVGAVQAED--------GDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVV 833

Query: 840 AL 841
           AL
Sbjct: 834 AL 835


>gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126]
 gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126]
          Length = 839

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 543/891 (60%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E + I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G+  N+
Sbjct: 3   EGENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR  +++GQGNFGS+DGD PAA R
Sbjct: 63  PYKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  +L D+ K+TVDF+ N+D S +EP VL A+ PN+L+NG  GIAVGMATN
Sbjct: 123 YTEARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV+G  A IDN DI +  LME I  PDFPTGA I G  G+K A+ TGRG IV
Sbjct: 183 MAPHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIYGYQGVKAAFETGRGRIV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     RE+++VTEIPY VNKA M+EK A LV EK+I  I+D+RDESDR G R
Sbjct: 243 MRAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V E+++ A  +V+LN LY+YT LQ+ FSVN VAL   +PE   L  ++K +V  R +V+
Sbjct: 303 IVYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGRPETLNLKDMIKHYVEHRHDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L +A+ RAH+L G  IA+ NLDEV+++IR S +PE AR  LM +         
Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q +AIL++RL RLTGL R+ I  E   +   I+    
Sbjct: 414 -----------------FKLSEIQAKAILDMRLQRLTGLEREKIIQEYEEIKKLIEYLES 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+     + IIK E+  ++D     RRT I+    +  DED I  ED+V+T+SH GY+K
Sbjct: 457 VLADEGLRMNIIKDEMQEIQDRYGDERRTEIIHSAEEFTDEDMIPNEDVVITLSHQGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L+ Y+ Q RGG G  G   +D+DF   LF+  TH  +L F+ LG VY  KV+RLP G
Sbjct: 517 RTLLNEYKTQGRGGVGSKGAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+A+ N++++   + +  ++     +D    NN ++V  T+ G +++  L  + +
Sbjct: 577 SKTSKGRAIQNLINIESEDSVRAVINVENLDDADYINNNFLVMCTEKGTIKKTTLEAYSR 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G  A+ ++  D +L+V+    +N+I++  + G+ +RF  S +R    R + GVRGI
Sbjct: 637 PRANGINAISINEGDRLLNVKLTNGDNNIIIAARSGRAIRFHESNVRPMG-RTAAGVRGI 695

Query: 728 SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L  G D V+ M  +   +A+                                       
Sbjct: 696 TLKDGKDIVVEMVAITRENAN--------------------------------------- 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L VSEKG+GKR+   D+RI+ R GKG++  +V++  + G LVA+  
Sbjct: 717 -------------LLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTE--KTGELVAIKE 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V D+D +++++  G  IR+ V  +R+  RAT+GV +    +++ + SVE++
Sbjct: 762 VIDSDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVNENDSISSVEKV 812


>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
 gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
          Length = 852

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/928 (39%), Positives = 545/928 (58%), Gaps = 110/928 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D      I  V + + M+ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M+++    
Sbjct: 2   DDSNIFDKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IY AL  +AQDWS R  L++G GNFGSVDGD  AA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +  D+ KDTVDF PN+D + +EP +L +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL E +DG V +IDN      D ++D L+EI++GPDFPTGA ILGR GI  AY 
Sbjct: 182 TNIPPHNLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAILGRKGIDQAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V++IE     +++I+VTE+PY VNKA ++EKIA+LV+EKRI  I +LRDE
Sbjct: 242 TGRGKIKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+ IE ++  +A+V+L QL+++T LQ  F V M+AL   +P+   L  +L  ++
Sbjct: 302 SDRSGMRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQPKVLNLKEMLVHYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +++VV RRTKY LNKA++RAH+L GL  A+  +DEV+ IIR S N   AR  L++R  
Sbjct: 362 NHQKDVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKR-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                      S+ Q +AI+++RL  LTGL R+ ++NE + L  
Sbjct: 420 ------------------------FEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEK 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E   IL+    LLG+I++E+L ++D+    RRT I   + D+ DE  I R+D ++T 
Sbjct: 456 KIAELEAILADEKVLLGVIREEILLIRDKYGDDRRTSIEMDMEDLSDEALIPRKDAIITF 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S LGY+KR+    + +Q RGGKG  G+ + DED + DLF+ STH  ++FF++ G VY+ K
Sbjct: 516 SKLGYIKRMTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG  +IN+L L   E+IT I+P  ED       Y+V AT++G V++   
Sbjct: 576 GYEIPESSRTARGVNIINLLQLQPEEKITAIIPLSED---GKQHYLVMATRNGIVKKTGF 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            ++  + ++G  A+ L   DE++ V+   +  DI L ++ GQC+RF +  +R   GR S+
Sbjct: 633 DEYKNVRKNGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRE-TGRVSM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G++L   D+V+ M I    D                                     
Sbjct: 692 GVIGMNLGDTDEVVGMQIHSEGDD------------------------------------ 715

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L VSEKG GKRT   +F + +R GKG+R   +++  + G ++
Sbjct: 716 -----------------LLIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKITE--KTGYVI 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIR-- 898
            V  +   ++I+L++ +G +IR+  + I +  R T GV + +   D   +V SV ++R  
Sbjct: 757 GVKTIKPEEEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADSDIKVASVAKVRFQ 816

Query: 899 ----------------ESEIVDEAESTE 910
                           E  + DE E+ E
Sbjct: 817 EEDESEDMEEDISEVSEETVSDENEAIE 844


>gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
          Length = 858

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   + +                                        
Sbjct: 695 DNDGQDEVVGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
 gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 838

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/903 (37%), Positives = 504/903 (55%), Gaps = 92/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D   ++ I  + +  EMQNSY+ YA++VI+GRA+P++RDG+KPVHRRIL+ M
Sbjct: 1   MSDDTNGGDNLFDR-IEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   E MG YHPHG++AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 60  FDNGHRPERGYVKSAKPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  ++ D+ +DTV F+PNYDG   EP VL +R PN+L+NG G
Sbjct: 120 GNDGAAAMRYTECRLTPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NP       L+A M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLNELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIVGEKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RG + IE   G R+ IV+TE+PYQVN   ++  IAE VR+ ++  I
Sbjct: 240 IDDAYRTGRGSIRMRGKAEIE-EEGSRQVIVITELPYQVNPDNLVSSIAEQVRDGKLKGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 299 SKIDDESSDRVGLRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +V  + +V+VRRT++ L KA + AH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 359 QMLSLYVKHQIDVIVRRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDIARE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL  L R  I +
Sbjct: 419 GLMD--------------------------LLTVDEIQANAILAMQLRRLAALERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  L   I +  DIL+   R   I++ EL  + ++    RRT+IV    D+ +ED I R
Sbjct: 453 QLAELERIIADLEDILAKPERQRAIVRDELAEIVEKYGDERRTQIVSATGDVSEEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR QRRGGKG  G  +R +D V   F+ STH +VLFF+++
Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNM 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y+ K + LP  +  ARG+ + N+L    GE+I  ++     +S  +  Y+V AT  G
Sbjct: 573 GRMYRLKTYELPEATRTARGQHVANLLEFQPGEQIAQVIQI---QSFEDAPYLVLATAQG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     SG IA+ L+  D+++  + C+ E+D+LL ++ GQ +RF      +
Sbjct: 630 RVKKSRLTDYATTRSSGLIAINLNEGDKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     DQ+++M +V    A                            
Sbjct: 690 RPMGRATAGVYGMRFRGEDQLLAMTVVQEDSA---------------------------- 721

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +   +  G+GKRT   ++    R G G+ A    K
Sbjct: 722 -------------------------LFVATSGGYGKRTPMEEYPAKGRGGLGVVAFKYQK 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G L+    V ++D+I+ ++  G +IR  VN+IR   R+T GV +    K   +V+V
Sbjct: 757 S--RGKLIGALTVTEDDEILAMTSAGGVIRTEVNQIRETGRSTMGVRLVDLDKGVELVAV 814

Query: 895 ERI 897
           +R 
Sbjct: 815 DRN 817


>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
 gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
          Length = 862

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/890 (41%), Positives = 536/890 (60%), Gaps = 60/890 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ    + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP++    L++II GPDFPTG  ILGR+GI +AY TGRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++T++PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR 
Sbjct: 244 RGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L  F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKEFLSVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  +A+ EL+Q       
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L ++I +
Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II++EL  +K    TPRRT IV    ++ D D I  E  ++ ++  G
Sbjct: 458 LQDILARRERIEAIIEEELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++   ++D+D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+I+   E      ++++V  T  G +++  LS F 
Sbjct: 578 PSSSRTARGIPIVQMLPIPKDEKITSIVAVSE---FTEDVFLVMLTHKGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L   D++  V    +E+ I+L T+ G  + F     ++   GR + GV+
Sbjct: 635 NIRTNGLIAISLGEGDQLRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPLGRATRGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L KGD++ISM ++                        +  T  I     D  V  N 
Sbjct: 695 AMKLKKGDELISMDVLP-----------------------AQVTAGIADAAEDEDVLDNE 731

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +EE  +E      +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++ 
Sbjct: 732 TEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFK--SKTDCLASLH 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            VN  D++++VS++G +IR  V+ I + SRA  GV +     D+ + +V 
Sbjct: 790 VVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDAIAAVA 839


>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
 gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
          Length = 865

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/899 (42%), Positives = 544/899 (60%), Gaps = 84/899 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  ++I DEM+++Y+ YA++VI+ RA+PD+RDGLKPVHRR+L+GM  +G+ +NK 
Sbjct: 3   ESSSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+A++YD + RMAQ WSLR  L++GQGNFGS+DGD PAA RY
Sbjct: 63  FKKSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL++ A  LL DL KDT+DF+PN+D S +EP VL  + P++L+NG  GIAVGMATN+
Sbjct: 123 TEARLKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +A +DN DI ++ L++ I  PDFPTG +I G  G+K A  TGRG +VI
Sbjct: 183 PPHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIYGYQGVKKAMLTGRGRVVI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RGV+ IE T   RE+I+VTEIPY VNKA ++EK A LV+EKRI  I+D+RDESDR G R+
Sbjct: 243 RGVAEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELKR A   V LNQLY+YT+LQS F VN VAL   +PE   L  ++  FV  R EV+ 
Sbjct: 303 VYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKGRPEILNLRDMIYHFVEHRHEVIY 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L +A+ R H+L GL IA+ N+DEV+ +IR S + ETA+  L+++          
Sbjct: 363 RRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLT + RD I  E   +   IKE   I
Sbjct: 413 ----------------FELSEIQAKAILDIRLQRLTAMERDKIVAEHKQISELIKELEAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +   + IIK+EL  +KD     RRT I     D+ DED I  E+MV+T+SH GY+KR
Sbjct: 457 LADKLLRVDIIKEELTEMKDRYGDARRTDIEHMADDLTDEDMIPVEEMVITISHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  YR Q RGG G  G   +D+DF   LF+ STH  +L F++ G V+  K + +P  +
Sbjct: 517 TSLDEYRTQNRGGVGSRGTSKKDDDFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVA 576

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N+L + +G+ I  ++     +D     N Y+V  T+ G +++ +L  F + 
Sbjct: 577 KTAKGRAIQNLLQMEKGDSIRAVINVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRP 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ ++  D++L V+    EN+I+L  + G+ + F    +R    R + GVRGI+
Sbjct: 637 RQNGIHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHFHEDQVRSMG-RTAAGVRGIT 695

Query: 729 LAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D +V+ M  V   DA                                         
Sbjct: 696 LDGDDNRVVGMVCVARDDAS---------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+GKR+S  D+RI+NR GKG+    ++  ++ G LVA+   
Sbjct: 716 ------------LLVVSETGYGKRSSIEDYRITNRGGKGVITMQIT--DKTGRLVAIKEA 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            D D +IL++  G  IR+ ++++R+  RAT+GV +    +D+ + SV ++    ++ + 
Sbjct: 762 VDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKVDAESLLSDD 820


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/870 (42%), Positives = 540/870 (62%), Gaps = 37/870 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +M   WN+
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VKCAR+ GEVMGKYHPHG+A+IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA R
Sbjct: 62  PFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K ++ LL D+ K+TVDF PNYDG  +EP VL  R PN+LVNG  GIAVGMATN
Sbjct: 122 YTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV++G + ++ N    +D L+E++  PDFPTG +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H  E     R  I+V E+PYQVNK A+LE+IAELVR+K++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++S ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    +++               Y I SDG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
            NE   +  +I + LDIL+  +R+  II  EL + K++        RR+ I     D+  
Sbjct: 482 VNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLAT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P+S YRAQ+RGG+G+  +  +D+D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P    + S  ++ YV
Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRYV 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQ 761
             + +R    R + GVRG++L +  QVI++ +       VL A  +   +   +   +  
Sbjct: 722 DENDVRPMG-RTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            R   G     TS +N   V   + +            I+ ++  G   RT   + R   
Sbjct: 781 GRGTKGMIAIQTSERNGKVVAATLVD--------STDEIMLITTGGVLIRTRVSEIREMG 832

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDND 851
           R+ +G+    V    ++  L  V   +  D
Sbjct: 833 RATQGVTLIAVEDGTKLSGLQRVVESDVED 862


>gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
 gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
          Length = 835

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/888 (39%), Positives = 533/888 (60%), Gaps = 84/888 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K ARI G+
Sbjct: 1   MSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIY+++ RMAQD+S R LL++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 61  VMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIAL 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDTVDF+PNYD + +EPVVL +R+PN+LVNG  GIAVGM TNIP HNL EV+ 
Sbjct: 121 EMLRDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVIS 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G   +++NPD     LME I GPDFPTGA+++G++GI+ AY TG G++ +R    IE+ S
Sbjct: 181 GLHLLMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAKVDIEEQS 240

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + +I+V EIPY VNKA ++ +IA+L REK+I  I D+ DESDR+G R+ I+++R  S 
Sbjct: 241 NGKSRIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSP 300

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY+ T +QS F+ NM+A+    P+   L  IL+ ++  +E+V+ RRT + L KA
Sbjct: 301 SVVLNNLYKLTLMQSSFTFNMLAIVDGTPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + RAH+L GL IA+ ++D ++ IIR S + E A+  LM                      
Sbjct: 361 QARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNE-------------------- 400

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+ Q +AIL++RL RLTGL R+ +  E       I +  DIL+   R+  I
Sbjct: 401 ------YELSDKQAQAILDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSI 454

Query: 501 IKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I QELL ++++    RRT + V  +L +EDED I  E++V+ ++H GY+KR+P S ++ Q
Sbjct: 455 IYQELLEIQEKFGDDRRTELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG+G  G+ + D+DF+  L   STH  VLFF+++G VY+ K + +P     A+G  +I
Sbjct: 515 RRGGRGVQGMGVHDDDFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVI 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L++GE+I T++   + E   ++ ++ F T  G V+R  +++F  I ++G  A+ L 
Sbjct: 575 NLLDLSEGEKIQTVINV-DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLR 633

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+L+V       +I++ T  G  V F  +A+R    R + GVRGI L   D  +   
Sbjct: 634 EGDELLNVSITDGNQNIIIGTHGGYAVSFSENAVRQMG-RTASGVRGIRLRDDDYAVGSD 692

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++                                                       +  
Sbjct: 693 VLKP-----------------------------------------------------DSN 699

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +  +SEKG+GK+T + D+ I  R GKGI+ +++++ N  G+L  +  V+  + I++++DK
Sbjct: 700 VFVISEKGYGKQTPASDYPIKGRGGKGIKTSNITEKN--GSLAGLTIVDGTEDIMVITDK 757

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           G +IR  V  +    R+T GV + +   D +V ++ ++   +   + E
Sbjct: 758 GVMIRFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKVEPEQPEADDE 805



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 92/246 (37%), Gaps = 15/246 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D +       +   +  G VKR  ++ +   R+   G   + +R+ D + ++ I   + +
Sbjct: 592 DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRK--NGLKAITLREGDELLNVSITDGNQN 649

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G+        +      A G   +  + L   +          D +      V
Sbjct: 650 IIIGTHGGYAVSFSENAVRQMGRTASG---VRGIRLRDDDYAVGSDVLKPDSN------V 700

Query: 649 VFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
              ++ G  ++   SD+    R GK    +   +    +  +       DI++ T  G  
Sbjct: 701 FVISEKGYGKQTPASDYPIKGRGGKGIKTSNITEKNGSLAGLTIVDGTEDIMVITDKGVM 760

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF + ++    GR+++GV  I+L    +V ++A V     + D+        ++  +  
Sbjct: 761 IRFNVKSVST-TGRSTMGVHLINLDDDAKVSTIAKVEPEQPEADDEKNLSNDENSTEQTE 819

Query: 766 SGDTEE 771
           S +  +
Sbjct: 820 SSNDRK 825


>gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129]
 gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae]
          Length = 856

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/903 (37%), Positives = 523/903 (57%), Gaps = 93/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ ++  D      +  + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDLLGGDGY--DRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG++HPHG++AIYD L R+AQDW++R  +++GQGNFGS 
Sbjct: 59  YDSGYRPDRSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECRL   A  ++ D+ ++TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    ++DNP+ D     +A M+ ++GPDFPT   I+G  G
Sbjct: 179 GIAVGMATNIPPHNLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGSQG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE   G+R+ IV+TE+PYQVN   M+  IAE VR+ ++  I
Sbjct: 239 INDAYTTGRGSIRMRGVTSIE-EEGNRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRHYVTHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIART 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 418 GLME--------------------------LLTVDEIQADAILAMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRT+I+    D+ +ED I R
Sbjct: 452 ELAEIELEIADYKDILARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVSSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G
Sbjct: 572 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATAQG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++LSD+      G IA+ L+  D+++    C  ++D+LL ++ GQ +RF  +  ++
Sbjct: 629 RVKKSRLSDYESNRSGGLIAINLNEGDKLIGAALCDNDDDLLLVSEEGQSIRFNANDDQL 688

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M +V                                 
Sbjct: 689 RPMGRATAGVKGMRFKGDDQLLAMTVVKP------------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + F+L  +  G+GKRTS  ++    R G+G+     + 
Sbjct: 718 ----------------------DAFLLVATSGGYGKRTSLDEYSPQGRGGQGVLTFKYTP 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+A   V+++D+I+ ++  G +IR  VN+IR +SRAT GV + +      ++++
Sbjct: 756 --KRGKLIAAVVVDEDDEILAITSAGGVIRTVVNQIRPSSRATMGVRLVNLEDGVELLAI 813

Query: 895 ERI 897
           +R 
Sbjct: 814 DRN 816



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 101/250 (40%), Gaps = 6/250 (2%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   + + D +  V    + +  +   + G      +  I+  
Sbjct: 372 VRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIARTGLMELLTVDEIQAD 431

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           A       R  +L +   V  +A +    ADY + +   +   A  R    +  +     
Sbjct: 432 AILAMQLRRLAALERQKIVDELAEIELEIADYKDILARPERQRAIVRDELAEIVDKYGDD 491

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +     +   ++L  +E  ++T++  G+ KRT    ++   R GKG+R  ++ + +
Sbjct: 492 RRTQIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDD 551

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVS 893
               +   F  + +D I+  ++ G + R+   E+  ASR  +G  + +  +   +ER+  
Sbjct: 552 ---VVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQ 608

Query: 894 VERIRESEIV 903
           V +I+  E  
Sbjct: 609 VIQIQSYEDA 618


>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
 gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
          Length = 831

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/890 (40%), Positives = 547/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +IDN D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNK+ ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   + +   +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 DDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+ L ++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 EVVLGDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 848

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/900 (40%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+  +  + K
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK +  +L D+ KDTVD + N+D + +EP VL  R P +L+NG  GIAVGMATN+P H
Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDG  A IDN D+ +D LME ++ PDFPTG  I G  G++ A+ TGRG +V+R  
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E+    RE I+VTEIPYQVNKA M++K A+++ +K+I  I+ +RDESDR G R+V  
Sbjct: 245 ATFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVYV 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +++LN+LY+YT+LQS FSVN +AL   +PE   L  ++  FV  R  VVVRRT
Sbjct: 304 IKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHVVVVRRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA  RAH+L GL IA  N+DEV+ IIR S N + AR+ L++R             
Sbjct: 364 EYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIER------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q +AI+E+RL +LTGL +D +R+E   +   I++  DIL+ 
Sbjct: 411 -------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAK 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + R + II++EL  +KD+    RR+ I     D+   D I  + +V+T+S+ GY+KR  L
Sbjct: 458 KERRMSIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y+ Q RGG G      R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS  +
Sbjct: 518 TEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS 577

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+A+ N++++ Q + +   +   +  DE   NN +++ ATK G V++  L  + +   +
Sbjct: 578 KGRAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTN 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   DE+LSV+  T E+ ++L  K G+ +RF  S  R    RN+ GVRGI+LA 
Sbjct: 638 GINAITIKDDDELLSVKLTTGESQVMLALKSGKAIRFEESKTRPMG-RNASGVRGITLAN 696

Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M  V   +++                                           
Sbjct: 697 DQDEVIGMVSVNDVESN------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL VSEKG+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V D 
Sbjct: 714 ---------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVAIKNVTDA 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V +++  +   + E  E
Sbjct: 763 DDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVKSDDEAIDEEDLE 822



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 105/253 (41%), Gaps = 13/253 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    ++  +  G VK+  L  Y   R    G + + ++D+D +  + + +  + V+
Sbjct: 606 EEYINNHFIIMATKKGQVKKTALEQYSRPR--TNGINAITIKDDDELLSVKLTTGESQVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   + +  +       A G  +  I   N  + +  ++   + ES+     ++ 
Sbjct: 664 LALKSGKAIRFEESKTRPMGRNASG--VRGITLANDQDEVIGMVSVNDVESN-----ILV 716

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R+ L D+   NR GK    +   +   E+++++  T  +D+++  K G  +R
Sbjct: 717 VSEKGYGKRSSLEDYRITNRGGKGVKTISVTEKTGELVAIKNVTDADDLMIINKSGIAIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++++RV   R + GVR I+L   D + ++A V   D   DE                 
Sbjct: 777 MEVASLRVMG-RATQGVRLINLKGNDSIAAVAKVKSDDEAIDEEDLEGVVGETTENPAGE 835

Query: 768 DTEEITSLKNDSS 780
            T +  +  N+  
Sbjct: 836 STTQEQNTSNEEE 848


>gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
 gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
          Length = 890

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/842 (45%), Positives = 535/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E     N  ++  AT  G V++  L  F
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+     +DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L + DQV+S+ +      +L    +   +   +     + R   G      S +N  
Sbjct: 722 GMKLPEDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGP 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V     EE           ++ +++ G   RT   +     R+ +G+     ++   + 
Sbjct: 782 VVGAVQVEE--------GDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVV 833

Query: 840 AL 841
            L
Sbjct: 834 GL 835


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/877 (42%), Positives = 535/877 (61%), Gaps = 49/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R +
Sbjct: 186 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 606 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYAE---DKYIIMATSNGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNAVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRGI L +G +V+S+ +      +L    +   +   +
Sbjct: 723 DEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKGDGAILTVTENGYGKRTEL 782

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
               ++ R   G      S +N + V                  I+ +S+KG   RT + 
Sbjct: 783 SEYPSKSRATKGVVSIKVSERNGAVV--------GAVQVGGNDEIMLISDKGTLVRTPAN 834

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              I  R+ +G+     +   ++  L  +  +  ++ 
Sbjct: 835 GVSIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDED 871



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 109/273 (39%), Gaps = 34/273 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  ++  +  G VK+  L+ Y   R    G   V ++D D +  + 
Sbjct: 628 ERITAILPVREYAEDKYIIMATSNGTVKKTALTAYSNPR--ANGIIAVNLKDGDQLIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEK----VWRLPIGS------------------PQARGKALI 619
           I +    ++ FS+ G V + K    V  L                      P  RG   +
Sbjct: 686 ITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNAVLDEEGNPQINFKGVRPMGRGATGV 745

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMK 677
             + L +G+R+ +++          +  ++  T++G  +R +LS++   +R+  G +++K
Sbjct: 746 RGIKLEEGQRVVSLIV------PKGDGAILTVTENGYGKRTELSEYPSKSRATKGVVSIK 799

Query: 678 LDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +      ++        ++I+L +  G  VR P + + +   RN+ GV  I  A  ++V+
Sbjct: 800 VSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIG-RNTQGVTIIRTASDEKVV 858

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +  +     D DE       M     +  GD+
Sbjct: 859 GLQRIDEIQGDEDEVELDENGMPIVPVVTEGDS 891


>gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 854

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/847 (51%), Positives = 598/847 (70%), Gaps = 5/847 (0%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G +  K Y K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS
Sbjct: 1   MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG 
Sbjct: 61  IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            G+AVGMATNIP+HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++
Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRS 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A+ATGRGSIV++G +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++
Sbjct: 181 AFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEI 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVI+L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I++
Sbjct: 241 RDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIE 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+ FR+EV++RRT++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ 
Sbjct: 301 AFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLN 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           + W  S+  + I  +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S
Sbjct: 361 KEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSS 420

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   IKE +  L S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV
Sbjct: 421 MINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMV 480

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TV+  GY+KRV LS YR QRRGGKG+ G  +++ED +T+LF+ +THTSVLFFS++G VY
Sbjct: 481 ITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVY 540

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV++LP+  P ARG+AL+NI  L +GE IT IMP P    +  N  +VF T +GN+RR
Sbjct: 541 RLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPS--ENDENQNIVFTTAYGNIRR 598

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N L+DF  I  +GKIA+KLD  D+++SV+ C + + + L+T+ G+ +RF +S +R F  R
Sbjct: 599 NSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSR 658

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS GVRGI LAK D VISM I+       + +  Y+K   A +RL +     I S    +
Sbjct: 659 NSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLA-KRLGTAINNSIDSKLEKT 717

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I  E   +L + E+FILT++E GFGKRTS+Y++RI+NR G GI     +  N  G
Sbjct: 718 LNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRN--G 775

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA FPV   D I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I +
Sbjct: 776 NVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIED 835

Query: 900 SEIVDEA 906
            +  +++
Sbjct: 836 PDSTEDS 842


>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
          Length = 829

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 550/902 (60%), Gaps = 89/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I+ EM+  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++Y AL R+AQD++LR  +++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  ++ D+GK+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG   +IDNP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG I +R
Sbjct: 183 PHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE     +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+V
Sbjct: 243 AKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+ A++++ILNQLY++T LQ  F +NM+AL   +PE   L  IL+ ++ F+E+V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA+ ++DEV+ +IR S   + A+  LM +           
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+L+L RLTGL R+ I +E N L   I E   IL
Sbjct: 412 ---------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +++L II+ EL  +K +    R+T I     D++ ED I  E++V+T++H GY+KR+
Sbjct: 457 ADENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +Q+RGG+G   +  +++DFV ++FI STH ++LFF++ G +YK K +++P    
Sbjct: 517 NADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L L+  E+I  ++   E +      ++V  TK G +++  +  +  I +S
Sbjct: 577 AAKGTNVVNLLQLDPNEKIQAVISIKEFDEES---FLVMCTKKGIIKKTVVGMYKNIRKS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE++SV     ++DI++ T  G  +RF    +R    RN++GV+GI+L +
Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPLG-RNALGVKGITLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +                           +++ +   +N      ++ E +C 
Sbjct: 693 DDFVVGMEVPNQ------------------------ESDVLVVSENGFGKRTHVGEYKC- 727

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                                        +R GKG+    VS  ++ G LV V  V D D
Sbjct: 728 ----------------------------QHRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE---IVDEAES 908
           +++L+++    IR+ V++I   SR   GV +     DE+V+++ +I + +   + D  E 
Sbjct: 758 ELMLINNL-HSIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSEEV 816

Query: 909 TE 910
           +E
Sbjct: 817 SE 818


>gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 872

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/906 (41%), Positives = 545/906 (60%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y
Sbjct: 8   DHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYT
Sbjct: 68  KKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 128 ECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAVGMATNMP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DGC A IDNPDI+L+ LM+ I+ PDFPTG  I G  G+K+AY TGRG I++R
Sbjct: 188 THNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRIILR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IVVTEIPY VNK  ++E IA LV+E ++  IA+  DES RQG R+V
Sbjct: 248 AKAEIE-SDESHDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDESGRQGMRIV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +R
Sbjct: 307 IDVKRDANANVILNKLFKMTALQSSFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA+DRAH+L GL IA  N+DEVV IIR S  P  A+  L +R           
Sbjct: 367 RTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RL++LTGL  + +  E + L   I    +IL
Sbjct: 416 ---------------FDLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S       ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLGY+KR 
Sbjct: 461 SDPELCKKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRT 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +R Q RGG G  G   R+ DF   ++  + H ++LFF+  G  Y  K + +P G+ 
Sbjct: 521 PLSDFREQARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTK 580

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   + I  I+     +DE   N+ YVVFATK+G V++  L  + +  
Sbjct: 581 DSKGRAIQNLLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRPR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ +   DE++ V     EN++++  + G+ VRF    IRV   R + GVRG+ L
Sbjct: 641 TNGVIAINIAEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVMG-RTATGVRGMRL 699

Query: 730 AKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             GD  VI M +V     +                                         
Sbjct: 700 DDGDDAVIGMIVVDDPINE----------------------------------------- 718

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++ VSE G+GKR+S  D+R +NR GKG++   ++  ++ G LVA+  V 
Sbjct: 719 ----------TVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVT 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV---D 904
           D++ +++++  G  IR+ V E R+  RAT+GV + +   K++ + SV R   SE+    +
Sbjct: 767 DDNDLMIINKSGITIRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSELEASFE 826

Query: 905 EAESTE 910
           E   +E
Sbjct: 827 EDNRSE 832



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 113/269 (42%), Gaps = 17/269 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D++  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + +    
Sbjct: 609 DDEEFINSHYVVFATKNGTVKKTCLEAYSRPR--TNGVIAINIAEGDEVVDVRLTNGENE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     + +    A G  +  +   +  + +  ++   +      N  V
Sbjct: 667 LIMANRNGRAVRFDERTIRVMGRTATG--VRGMRLDDGDDAVIGMIVVDD----PINETV 720

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  +++G  +R+ + D+ + NR GK    L   D+   +++++  T +ND+++  K G  
Sbjct: 721 MVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVTDDNDLMIINKSGIT 780

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHMSA 760
           +R  ++  RV   R + GVR I+L+K + +I+     M+  L A  + D R  + K    
Sbjct: 781 IRLSVAECRVMG-RATQGVRLINLSKKNDIIASVCRTMSSELEASFEEDNRSEWDKTQDE 839

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEER 789
           +  L   +  E            +I +E 
Sbjct: 840 ENELRPSEPAEDQEDHAPLVDFDDIEDEN 868


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/921 (40%), Positives = 544/921 (59%), Gaps = 84/921 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K  H LL D+ K+TVDF PNYDGS  +P VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLAKIGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++++P   +D L+EI+  PDFPT  ++ G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNHPQASIDELIEIVPAPDFPTAGIVYGVQGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQPKLLNLRELLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L +AR+R HVL GLA+A+AN+DE + II+ +P P  A++ LM R+W+++ ++
Sbjct: 362 VTRRTLYELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++      +               + + SDG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLSRAQGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II  EL+++K E   PRR++I     ++  ED I
Sbjct: 482 TAEYREVMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  PLS YRAQ+RGG+G+  +VM+D+D++  LFI +TH  +L FS
Sbjct: 542 TPQDMVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY  KV+ +P GS  +RG+             I  + P  E E             
Sbjct: 602 NRGRVYWLKVYEVPQGSRNSRGRP------------IVNMFPLQEGEKIN---------- 639

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
                                         +L V+  + +  + L T LG   + P+ A 
Sbjct: 640 -----------------------------VVLPVKEFSADKFVFLATSLGTVKKTPLEA- 669

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
             F+     G+  + L  GD +I   I        D +   M    A + +   + +   
Sbjct: 670 --FSRPLRKGIIAVGLDDGDFLIGAQIT-------DGQHDVMLFSDAGKAVRFDENDVRP 720

Query: 774 SLKNDSSVEGNISEERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +    V G   EE  Q + L     + Q +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 721 MGREARGVRGMQLEEGQQVIALLVAGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMI 780

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V  + +I+L++  G LIR  V+EIR   RAT+GV + S  + 
Sbjct: 781 AIQTSERN--GRVVAATLVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEG 838

Query: 889 ERVVSVERIRESEIVDEAEST 909
            ++  +++I E++   +AES 
Sbjct: 839 TKLSGLQQIAETDAEADAESD 859


>gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289]
 gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289]
          Length = 860

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/914 (39%), Positives = 551/914 (60%), Gaps = 90/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM
Sbjct: 1   MDEN----QTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSV
Sbjct: 57  RGIGNFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIESDEN-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+ RQG R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL G +P   +L   +K 
Sbjct: 296 DETGRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRT++ L KA++RAH+L  L  A  N+DEVV +IR S  P  A++ L +R
Sbjct: 356 FVEHRHDVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                         E+Q++AI+++RL++LTGL  D +  E + L
Sbjct: 416 --------------------------FGFDELQSKAIVDMRLSQLTGLRLDQLHQEFDEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL +  R   ++K EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 MQTIKDLQEILDNPERCREVMKAELQEVKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TISHLGYIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   A+G+A+ N+LSL  G+ +   +     +D++  ++ +VVFATK G V+
Sbjct: 570 MKCYDIPEGDKNAKGRAIQNMLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ ++  DE++ V     +N++++  + G+  RF  S IR    
Sbjct: 630 KTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTMG- 688

Query: 719 RNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R S GVRG+ L +   D+V+ M +V     +                             
Sbjct: 689 RVSTGVRGMRLDEDGQDEVVGMIVVNDPVNE----------------------------- 719

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  ++ VSE+G+GKR+   D+R++NR GKG++  ++++  
Sbjct: 720 ----------------------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITE-- 755

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
           + G LVA+  V D + +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV 
Sbjct: 756 KTGKLVAIKNVTDANDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVC 815

Query: 896 RIRESEIVDEAEST 909
           ++  SE+  + E  
Sbjct: 816 KVMSSEMETQVEEE 829



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 108/258 (41%), Gaps = 16/258 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D+D  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + +    
Sbjct: 609 DDDAFLDSHFVVFATKQGIVKKTSLRAYSRPR--TNGVIAININEGDEVVDVRLTNGKNE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNL 646
           ++     G   +     +      + G   +  + L++   + +  ++   +      N 
Sbjct: 667 LIMADRNGRACRFDESNIRTMGRVSTG---VRGMRLDEDGQDEVVGMIVVND----PVNE 719

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703
            V+  ++ G  +R+++ D+   NR GK    L+      ++++++  T  ND+++  K G
Sbjct: 720 TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITEKTGKLVAIKNVTDANDLMIINKSG 779

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++  RV   R + GVR I+LAK + VI+ ++     ++ + ++         + 
Sbjct: 780 IVIRMSVAECRVMG-RATQGVRLINLAKKNDVIA-SVCKVMSSEMETQVEEESREQWSKT 837

Query: 764 LISGDTEEITSLKNDSSV 781
                ++ +   + + + 
Sbjct: 838 SEEIKSDTVAPGETEDTT 855


>gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
 gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
          Length = 878

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/842 (45%), Positives = 536/842 (63%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N +I +D LM  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I+ EL+ V+D     RRT I   + D++ ED I +ED+VVT+S  
Sbjct: 486 ELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSRE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVFQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILPVSEY---SEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +G IA+ L   D ++ V+     ++I+L +K G+ VRF    +R    R + GVR
Sbjct: 663 AKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGMG-RTASGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L+  DQV+S+ +      +L    +   +   +    A+ R   G      S +N S
Sbjct: 722 GMKLSGEDQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERNGS 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V    +E+            + +++ G   RT   +     R+ +G+     S+   + 
Sbjct: 782 VVGAVQAED--------GDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVV 833

Query: 840 AL 841
           AL
Sbjct: 834 AL 835



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 163/440 (37%), Gaps = 39/440 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL++  +  H+L      +  + + + ++R        RR  
Sbjct: 462 LHRLTGLEHEKILDEYKALLDEIAELMHILASTERLMEVIRDELVMVR--DMYGDERRTE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  + +  D++DLI   D     + +       + Q  +  E +     G     +++E 
Sbjct: 520 IGAAIHDIDMEDLITQED----VVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDE- 574

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKD-ELDTPRRT----RIV--------EGL 524
                 I+  L   +  + L    + +  S+K  +L    RT     IV        E +
Sbjct: 575 ----DFIERLLVANTHDNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERI 630

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +        +  +   +  G VK+  L  +   R    G   V +R++D +  + I  
Sbjct: 631 TAILPVSEYSEDKFIFMATGDGTVKKTSLDQFAKVR--ANGLIAVNLREDDSLIGVDITD 688

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
             + ++ FS  G V +    ++      A G   +  + L+  +++ +++         N
Sbjct: 689 GSSEIMLFSKAGKVVRFNEEQVRGMGRTASG---VRGMKLSGEDQVVSLIV------PSN 739

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTK 701
              ++  T++G  +R  LS++   +R+  G +++K+      ++        ++ ++ T 
Sbjct: 740 EGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITD 799

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +S +     RN+ GV  I  ++ + V+++  +   +          +   A 
Sbjct: 800 AGTLVRTRVSEVSQVG-RNTQGVTLIRTSENENVVALQRIDEVEEAEIIEGEEGEVTEAT 858

Query: 762 RRLISGDTEEITSLKNDSSV 781
               + D  +  +    +  
Sbjct: 859 VTTEATDAPQADTDAESTEE 878


>gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
 gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
          Length = 837

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/908 (39%), Positives = 555/908 (61%), Gaps = 97/908 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ K+TVDF PN+D + +EP VL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL E++   V +ID+      +  +D +++I++GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R +++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K++  
Sbjct: 234 GIEEAYRTGRGKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRT+Y LN+A +RAH+L GL IA+ N+DEV+RIIR S N +TA+ 
Sbjct: 354 DMLKHYLKHQEEVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L+EVQ  AI+++RL  LTGL R+ +  
Sbjct: 414 ELMAR--------------------------FDLTEVQASAIVDMRLRALTGLEREKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I E   IL+ R  LLG+IK+E+L + ++    RRT I     D+  ED I R
Sbjct: 448 EYEELMKKIGELKAILADRKLLLGVIKKEILVISEKYGDERRTSIGFDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++ +GY+KR+ +  +++Q RGGKG  G+ + D+D++ +LFI +TH  ++FF++ 
Sbjct: 508 ENVVITMTKMGYIKRMSMDTFKSQNRGGKGIKGMQILDDDYIKELFITTTHHYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  ARG A+IN+L L   E+IT ++P  E E   +  Y++ AT+ G
Sbjct: 568 GRVYRLKGYEIPEASRTARGTAIINLLQLMPDEKITAMIPIREYE---DGQYLLMATEKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D+  + ++G  A+ L   D+++ V+    E D++L TK G C+RF    +R 
Sbjct: 625 LVKKTPIKDYANVRKTGLAAIVLREDDKLIEVKITDDEQDVILVTKYGMCIRFSEKDVRP 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L                                     GD +E+  +
Sbjct: 685 -TGRVSMGVRGMNL-------------------------------------GDHDEVIGM 706

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                           ++  + +++L  SEKG GK T   +F   NR GKG++   +++ 
Sbjct: 707 ----------------QISDQGKYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V +  V+++ +I++++ +G +IR+  ++I +  R T GV + +  ++E+V S+ 
Sbjct: 750 -KTGDVVGMKAVDEDSEIMMINTEGIVIRMKCSDISVYGRITSGVKLINLPENEKVASIA 808

Query: 896 RIRESEIV 903
           ++R++   
Sbjct: 809 KVRKASAE 816


>gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415]
 gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415]
          Length = 829

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/887 (41%), Positives = 549/887 (61%), Gaps = 85/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+D P+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ +LM R           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK E+  +K +   PRRT + V  +L +EDED I  E++++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEENVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV DL   STH  VLFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E   +   + F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLTDGETIQTIISLNQNE--IDEKSLFFTTRQGLVKRTSISEFTNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V   T +++I++ T  G  VRF    +R    R + GV+GI+L 
Sbjct: 634 NGLRALNLKDGDELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNMG-RGATGVKGITLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             DQV+  +++                                                 
Sbjct: 693 DADQVVGASVIRD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++    R GKGI+  +++  ++ G+L  +  V+ +
Sbjct: 706 ------DQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANIT--DKNGSLAGLVTVDGH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + I++++D G +IR  V+ I    R+T GV +    ++ ++V+   I
Sbjct: 758 EDIMIMTDTGVIIRTGVSNISQTGRSTMGVKVMRLDENAKIVTFALI 804


>gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
          Length = 834

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/904 (40%), Positives = 558/904 (61%), Gaps = 97/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MEDNIF-------DKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +L D+ K+TVDF PN+D + +EPVVL +RYPN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+DG V +IDN      D  L+ ++++I+GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGTH 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +I+VTE+PY VNKA ++EKIAELVR+K++  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D S+R+G R+ I+LK+ A+A+V+LNQLY++T LQ  F V M+AL   +P+   L+
Sbjct: 294 ITDLNDHSNREGMRICIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALINNQPKIMNLL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++A +EEVV RRT+Y LNKA++RAH+L GL  A+ N+DEV+RIIR +  P+TA+ 
Sbjct: 354 EMLKHYLAHQEEVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            L+EVQ +AI+++RL  LTGL R+ +  
Sbjct: 414 QLMER--------------------------FGLTEVQAQAIIDMRLRALTGLEREKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I++   IL+ R+ LL ++++E+L + ++    RRT+I     D+  ED I +
Sbjct: 448 EYAELMEKIRKYKAILADRNLLLRVVREEILLISEKYGDDRRTQIGFDEFDISMEDLIPK 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ++ V+T++ LGY+KR+ +  +R+Q RGGKG  G+   + D++ +L + +TH  ++FF++ 
Sbjct: 508 QNTVITMTKLGYIKRMTVDNFRSQNRGGKGIKGMQTIENDYIEELLMTTTHHYLMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L  GE+IT ++P  + E      Y++  TK G
Sbjct: 568 GKVYRLKAYEIPEAGRTARGTAIINLLQLAPGEKITAVIPLNKFEE---GKYLMMVTKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R  + D+  + ++G  A+ L   DE++ V+    +  I+L TK G C+RF  + +R 
Sbjct: 625 LVKRTPILDYEHVRKTGLAAIVLRDEDELIEVKYTDNKKHIILVTKEGMCIRFKENDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L+                                     D++E+  +
Sbjct: 685 -TGRVSMGVRGMNLS-------------------------------------DSDEVVGM 706

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + D+                +   +L VSEKG GKRTS  +F   NR GKG++   +++ 
Sbjct: 707 QLDT----------------QGDCLLFVSEKGMGKRTSISEFTCQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G ++ V  VN+ +++++++ +G +IR+  ++I +  R T GV + +  +  +V SV 
Sbjct: 750 -KTGNVIGVKAVNEENEVMMITTEGIIIRLQCSDISMLGRITSGVKLINLDEGVKVASVA 808

Query: 896 RIRE 899
           ++RE
Sbjct: 809 KVRE 812


>gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni]
 gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 866

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/905 (39%), Positives = 539/905 (59%), Gaps = 85/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   +++   +  I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSV
Sbjct: 60  NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ A
Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R    IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +R
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R
Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I  E   L
Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIEAEYTDL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I++  DIL+   R+  II QELL + ++    RRT + V  +  +EDED I  E+++
Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           ++++H GY+KR+  S +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VY
Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + +P    QA+G  +IN+L L+ GER+  ++    D ++  + ++ F TK G V+R
Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +S+F  I +SG  A+ L   D ++SV     + +I++ +  G  V F  S +R    R
Sbjct: 633 TAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L   D V+                                           
Sbjct: 692 TASGVRGMNLRDKDYVVG------------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L +    +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G
Sbjct: 710 -----------ADLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V+ ++ I++ +D G +IR    ++ I  RAT GV +    +  +V ++ ++ +
Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816

Query: 900 SEIVD 904
            E  +
Sbjct: 817 EEDEE 821


>gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
 gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
          Length = 851

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 529/892 (59%), Gaps = 85/892 (9%)

Query: 11  EEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           E+  GI    VSI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI++   ++   +N
Sbjct: 3   EQNSGIQQPQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELANSYN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD  AA 
Sbjct: 63  RPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ + A   L D+ K+TVDFRPNYD + QEP VL  + PN+L+NG  GIAVGMAT
Sbjct: 123 RYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE+ D    ++D+P   +  LME+++GPDFPT   +    G+ +AY TGRG++
Sbjct: 183 NIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGKGLSDAYHTGRGTV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG   +E+     + IV+ EIP+ +NK++++EKIA LV + +I  I+DLRDESDR+G 
Sbjct: 243 KVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDESDRKGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+LKRG   D+++N LY+YT L++ F +NM+A+   +P    L   L  FV  R EV
Sbjct: 303 RVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALSCFVDHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RRT+Y L KA  RAH+L GL IA+ ++DEVV +IR S +P+ AR  LMQR        
Sbjct: 363 VIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSEVQ RAIL++RL RLTGL R+++  E   L  +I+   
Sbjct: 415 ------------------FELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +L +   L   +K+E+  +++   TPRRT  + + L  ++ ED I  E++V+T+S  GY
Sbjct: 457 SVLENPEVLRSELKREIREIRETFATPRRTEVLTDALGGIDIEDLIPDEEVVITLSRRGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  Y+ Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P
Sbjct: 517 MKRTSLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  A+G  + N+L L +GE +TT++   E      + Y +F TK G V+R+  S + +
Sbjct: 577 EGSRTAKGVHINNLLPLEEGEWVTTVLAVREFAE---DKYFLFVTKRGMVKRSSASLYAR 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +SG +A+ L   DE++ V    +++ I+L T  G  +RF    +R    R + GV+GI
Sbjct: 634 CRKSGLMAVGLREDDELVVVRPIREDSHIVLATADGYSIRFACKDVRPMG-RVATGVKGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V++  I+   D   +                                      
Sbjct: 693 ALRRQDVVVAGVILKENDQTTE-------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+++S  GFGKRT    +R+ +R GKGI    V+  ++ G +V   PV
Sbjct: 715 ------------IMSISANGFGKRTRVDLYRLQSRGGKGIINFKVT--SKTGPVVGAMPV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            DND +I+++    ++R+ V ++R   RAT GV++    +   VV  +R+ E
Sbjct: 761 RDNDGLIMLTSANKVVRIGVEDVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 812


>gi|220903292|ref|YP_002478604.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 855

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/902 (40%), Positives = 534/902 (59%), Gaps = 91/902 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +SI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++   +N+ + K ARI
Sbjct: 8   QISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARI 67

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD PAA RYTE R+ +
Sbjct: 68  VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSR 127

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L DL K+TVDFRPNYD + QEP V+ ++ PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 128 LAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D    ++D+P   +D LME ++GPDFPT   +    G+ +AY TGRG++ +RG   IE
Sbjct: 188 LCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGKGLYDAYHTGRGTVKVRGRMEIE 247

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 + IV+ EIPY +NK++++EKIA LV +++I  I DLRDESDR+G RVVI+LKRG
Sbjct: 248 DRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKRG 307

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++++N LY++T L+S F +NM+A+   +P+   L   L  FV  R EVV+RRT+Y L
Sbjct: 308 TIPEIVINALYKFTPLESSFGINMLAVVDNRPQLLNLKSALTCFVDHRREVVIRRTRYDL 367

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL +A+ N+DEVV +IR S +P+ AR  LM+R                 
Sbjct: 368 EKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKR----------------- 410

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE+Q +AILE+RL RLTGL R+++  E   L  +I+    IL +   L
Sbjct: 411 ---------FELSELQAKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVL 461

Query: 498 LGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G +K+E+  +++   TPRRT  + E L D++ ED I  ED+V+T+S  GY+KR  L  Y
Sbjct: 462 RGELKREIREIRETFATPRRTEVLREALTDIDIEDLIPDEDVVITLSRRGYMKRTGLENY 521

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P GS  A+G 
Sbjct: 522 QQQKRGGKGIAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGV 581

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L  GE +TT++   E      + Y +F TK G V+R+  S + +  ++G +A+
Sbjct: 582 HINNLLPLEDGEWVTTVLALREFAE---DKYFLFVTKRGMVKRSSASLYARCRKTGLMAV 638

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V     ++ I+L T  G  +RF    +R    R + GV+GI+L + D V+
Sbjct: 639 GLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDVRPMG-RVATGVKGIALRRQDFVV 697

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  IV   D   +                                               
Sbjct: 698 AGVIVKETDQTTE----------------------------------------------- 710

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I+++S  GFGKRTS   +R+ +R GKGI    V+   + G +V   PV D+D +IL+
Sbjct: 711 ---IMSISANGFGKRTSIELYRLQSRGGKGIINFKVT--GKTGPVVGAMPVRDDDSLILL 765

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--------SEIVDEAES 908
           +    ++R+ ++E+R   RAT GV++    +   VV  +R+ E        SE +DE   
Sbjct: 766 TSANKIVRIGLDEVRSKGRATMGVMLVRLDEGAHVVGFDRVDEGGQTGRDLSEDMDEDAV 825

Query: 909 TE 910
            E
Sbjct: 826 PE 827



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 97/272 (35%), Gaps = 12/272 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +   + V+  G VKR   S+Y   R+   G   V +R++D +  + 
Sbjct: 593 EWVTTVLALREFAEDKYFLFVTKRGMVKRSSASLYARCRKT--GLMAVGLREDDELVVVR 650

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            +   + ++  ++ G   +     +      A G   +  ++L + + +   +   E + 
Sbjct: 651 PIRNDSHIVLATADGIAIRFSCKDVRPMGRVATG---VKGIALRRQDFVVAGVIVKETDQ 707

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
           +     ++  + +G  +R  +  +   +R GK  +      +   ++       ++ ++L
Sbjct: 708 TTE---IMSISANGFGKRTSIELYRLQSRGGKGIINFKVTGKTGPVVGAMPVRDDDSLIL 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T   + VR  +  +R    R ++GV  + L +G  V+    V        +    M   
Sbjct: 765 LTSANKIVRIGLDEVRSKG-RATMGVMLVRLDEGAHVVGFDRVDEGGQTGRDLSEDMDED 823

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +          +  +S   D       + E  
Sbjct: 824 AVPEGSAPAAQDAPSSAPADRGAGEGGTGEDA 855


>gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
          Length = 859

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/914 (39%), Positives = 550/914 (60%), Gaps = 90/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM
Sbjct: 1   MDEN----QTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSV
Sbjct: 57  RGIGNFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIESDEN-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+ RQG R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DETGRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RR ++ L KA++RAH+L  L  A  N+DEVVRIIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                         E+Q+RAI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FEFDELQSRAIVDMRLSQLTGLRLDQLHQEFEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL++  R   ++K+EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 MQTIKDLQEILNNPERCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TISHLGYIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+LSL  G+ +   +     +D+   ++ YVVFATK G V+
Sbjct: 570 MKCYDIPEGDKNSKGRAIQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ ++  DE++ V      N++++  + G+  RF  S IR    
Sbjct: 630 KTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMG- 688

Query: 719 RNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R S GVRG+ L +   D+V+ M +V     +                             
Sbjct: 689 RVSTGVRGMRLDEDGQDEVVGMIVVNDPVNE----------------------------- 719

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  ++ VSE+G+GKR+   D+R++NR GKG++  +++  +
Sbjct: 720 ----------------------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--D 755

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
           + G LVA+  V D++ +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV 
Sbjct: 756 KTGKLVAIKNVTDDNDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVC 815

Query: 896 RIRESEIVDEAEST 909
           ++  SE+  + E  
Sbjct: 816 KVMSSEMESQVEDD 829


>gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 841

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/890 (40%), Positives = 538/890 (60%), Gaps = 85/890 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA VILN LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV
Sbjct: 303 IVIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++  NKA  RAH+L GL IA+ ++DE++ +IR S + + A+  +M+R         
Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L II+ EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV  S +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P 
Sbjct: 517 KRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  ERI  I+            Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRAAKGIPVINLLGIDSSERIEAIISASG--GPQEGRYLFFTTRLGVVKRTSVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E+ +++ T  G  V F  + +R    R + GVRGI 
Sbjct: 635 RANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDMG-RTAAGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+  A++                                               
Sbjct: 694 LRDGDYVVGAAVI----------------------------------------------- 706

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  ++  +L ++E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+
Sbjct: 707 ------TEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             + I+++++KG LIR  V  +    RAT GV +     + +VV++  + 
Sbjct: 759 GEEDIMVITNKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMATVE 808


>gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
          Length = 836

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/913 (37%), Positives = 512/913 (56%), Gaps = 91/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E     IT + +T+EM+NSY+ YA++VI+GRA+P++RDG+KPVHRR+++ M
Sbjct: 1   MSDDTNGGGETLFDRITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 61  YDNGFRHDRGYVKSARPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECRL   A  ++ D+ ++TV+F PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGPAAMRYTECRLTPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    +++NP+ D     +A M+ ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLNELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIVGDQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RG S IE   G R+ I++TE+PY VN   ++  IAE VR+ +I  I
Sbjct: 241 IKDAYTTGRGSIRMRGKSTIE-EEGSRQIIIITELPYMVNPDNLVSSIAEQVRDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 AKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDSVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QMLRLYVKHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDIARE 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L                             + + ++Q  AIL ++L RL  L R  I +
Sbjct: 420 GLKD--------------------------LLDIDDIQADAILAMQLRRLAALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +   IL+S  R   I++ EL  + ++    RRT IV    D+ +ED I R
Sbjct: 454 ELAEIEETIADLKAILASPERQRAIVRDELTEIVEKFGDERRTEIVGATGDVSEEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR+QRRGGKG  G  ++ +D V   F+ STH  ++F ++ 
Sbjct: 514 ENVVVTITSTGYAKRTKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNY 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L    GE+I  I+     +S  +  Y+V AT+ G
Sbjct: 574 GRVYRLKAYELPEASRTARGQHVANLLEFQPGEQIAEIIQI---QSFEDAPYLVLATQQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+      G IA+ L+  D+++  + CT ++D+LL ++ GQ +RF      +
Sbjct: 631 RVKKSRLTDYDTARSGGLIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ++++ +V                                 
Sbjct: 691 RPMGRATAGVKGMRFRGEDQLLALTVVHD------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 +  +L  +  G+GKRT   ++ +  R   G+       
Sbjct: 720 ----------------------DSCLLVATSGGYGKRTPMEEYPVKGRGTMGVVTFKYDP 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V ++D+I  V+  G +IR  V +IR  SRAT GV +   AK   ++++
Sbjct: 758 --KRGKLIGAVTVTEDDEIFAVTSAGGIIRTEVGQIRKTSRATMGVRLVDLAKGVELLAI 815

Query: 895 ERIRESEIVDEAE 907
           +R  E E  + A+
Sbjct: 816 DRNVEDEGEESAQ 828


>gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977]
 gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977]
          Length = 804

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/886 (41%), Positives = 535/886 (60%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M Q G+   +K+ K A
Sbjct: 4   VLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+ A+YDA+ R+AQ+W+LR  LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  GVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  N+DG+ +EP VL A +PN+L NG  GIAVGMAT+IP HNL
Sbjct: 124 SPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++   A+ID+P+I LD +M+ + GPDFPTG   L R G+K AY TG+GS+ +R    
Sbjct: 184 GELINALAAMIDDPEITLDGVMQHLPGPDFPTGG-RLNRVGLKRAYETGKGSLRLRARVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E   G R+ +VVTEIPYQVNKA+++ +IA LVR K++ DI+ LRDESDRQG R+VIELK
Sbjct: 243 TE-ERGGRKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+LNQL++ T+LQ+ F++NM+A+   +P    L+ +++A++  R EVVVRRT++
Sbjct: 302 RGANPDVVLNQLFKQTNLQTSFTINMLAIVNGEPRVLPLLAMMRAYLDHRREVVVRRTRF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA DRAHVL GL IA+ +LDEV+ +IR S +   A+  LMQR               
Sbjct: 362 DLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ +AIL++RL RLTGL R+ ++ E   L   I     IL+  +
Sbjct: 407 -----------FALSEVQAQAILDMRLQRLTGLEREKLQAEYRELQETIAYLRAILADET 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G++K ELL+++++    RRT I E       ED I  E MV+T++  G++KR PL  
Sbjct: 456 RLWGVVKDELLAIREKFADERRTLITEFAEGFNPEDLIEDEPMVITMTAAGFLKRTPLED 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      +DED  T +F+   H  +LFF++ G VY+EKV+ LP     ARG
Sbjct: 516 YRAQGRGGMGAKAGRTKDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + + L L +GE I  ++      S  +  Y VFAT+ G V++  + D+  +N SG IA
Sbjct: 576 THVKSFLPLEEGEEIKALLSLR---SLTDPGYFVFATRKGVVKKTAIRDYQNLNASGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D+++ V        +++ T+ G+ +RFP+  +R   GR S GVRGI L +GD+V
Sbjct: 633 INLVEGDDLVDVRIAGSGAQVVMATRGGKAIRFPLDEVRA-TGRASQGVRGIRLKEGDEV 691

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S+ IV+  D + D                                              
Sbjct: 692 VSL-IVVPKDWEGD---------------------------------------------- 704

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L +S  G+GKRT   ++ +  R G+G+    +++  ++G L A+  V+ ++ +++
Sbjct: 705 ----LLAISSHGYGKRTPLEEYPLQGRGGQGVITFKLNE--KVGHLTALLAVDGDEDLLV 758

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +S  G  IR  V  I   SR T GV + + A  + + S   I+  +
Sbjct: 759 LSRGGLAIRTRVRTISQYSRPTSGVKVMNLAAGDEIASAFVIKPHD 804


>gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
 gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
          Length = 874

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/853 (44%), Positives = 541/853 (63%), Gaps = 27/853 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 72  SARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEI 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR  
Sbjct: 192 NLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRAR 251

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 252 AEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 312 EIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ RSW    +  +++
Sbjct: 372 TIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRSWALGTVAAMLE 431

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  +L+E Q +AIL+LRL +LTGL  + +  E   L  +I
Sbjct: 432 RAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLKQI 491

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L IL S  RL+ +I++EL ++++  +  RRT I E   D+  ED I +ED+VVT+SH
Sbjct: 492 EELLFILRSPDRLMEVIREELEAIRNVYNDARRTEITENTADINIEDLINQEDVVVTLSH 551

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 552 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVY 611

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +   YV  AT  G V++  L D
Sbjct: 612 QLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTPLQD 668

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R    R + GV
Sbjct: 669 FSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAMG-RTATGV 727

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI L   D+V+S+ I      +L    +   +         + R   G      S +N 
Sbjct: 728 RGIKLMDDDKVVSLIIPRGEGHILTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERNG 787

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V     E+  Q        I+ +++ G   RT   +  +  R+ +G+     ++  ++
Sbjct: 788 HVVGAIQVEDTDQ--------IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKV 839

Query: 839 GALVAVFPVNDND 851
             L  V    D+D
Sbjct: 840 VGLQRVAETEDDD 852


>gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
 gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
          Length = 862

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/914 (39%), Positives = 550/914 (60%), Gaps = 90/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM
Sbjct: 1   MDEN----QTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSV
Sbjct: 57  RGIGNFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIESDEN-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+ RQG R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DETGRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RR ++ L KA++RAH+L  L  A  N+DEVV IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                         E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL++  R   ++K+EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 MQTIKDLQEILNNPERCKEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TISHLGYIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+LSL+ G+ +   +     +D+   ++ YVVFATK G V+
Sbjct: 570 MKCYDIPEGDKNSKGRAIQNMLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ ++  DE++ V      N++++  + G+  RF  S IR    
Sbjct: 630 KTSLRAYSRPRTNGVIAININDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMG- 688

Query: 719 RNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R S GVRG+ L +   D+VI M +V     +                             
Sbjct: 689 RVSTGVRGMRLDEDGQDEVIGMIVVNDPVNE----------------------------- 719

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  ++ VSE+G+GKR+   D+R++NR GKG++  +++  +
Sbjct: 720 ----------------------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--D 755

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
           + G LVA+  V D++ +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV 
Sbjct: 756 KTGKLVAIKNVTDDNDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDIIASVC 815

Query: 896 RIRESEIVDEAEST 909
           ++  SE+  + E  
Sbjct: 816 KVMSSEMESQVEDD 829


>gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
 gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
          Length = 849

 Score =  759 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/904 (40%), Positives = 538/904 (59%), Gaps = 92/904 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D++    I+ V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    
Sbjct: 2   DDDKIFDKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IYDAL ++AQDW+ R  L++G GNFGS DGD  AA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL EV+   V +IDN      +  +D +M+II+GPDFP GA ILG  GIK AY 
Sbjct: 182 TNIPPHNLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHRGIKEAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V+ IE     + +IVVTE+PY VNKA +++KI ELV+ KR+  I D+RDE
Sbjct: 242 TGRGKIKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R+G RVVIELK+  +A+V+LNQLY++T LQ  F VNM+AL    P+   +  +L  ++
Sbjct: 302 SSREGIRVVIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVDGVPKILNISQMLGYYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+  L++R  
Sbjct: 362 KHQEDVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIER-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E+Q +AI+++RL  LTGL R+ +  E   L  
Sbjct: 420 ------------------------FGLTEIQAQAIVDMRLRALTGLEREKLEAEYKELMD 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I     IL+   +LLG+IK ELL +  +    RRT +   + ++ DE+ I RE++V+T+
Sbjct: 456 KISYLKAILADEKKLLGVIKDELLVISQKYGDERRTALGRDVDEVTDEELIERENIVITM 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LGY+KR+P  +++AQ RGGKG  G+   DED++  + + +TH  ++FF++ G VY+ K
Sbjct: 516 TKLGYIKRMPEDIFKAQNRGGKGIRGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     ARG A++N+L L  GE+IT ++P    E   +  Y+  AT++G V++  +
Sbjct: 576 GYEIPEAGRTARGVAIVNLLQLQAGEKITAVIPLKSYE---DGKYLFMATRNGMVKKTDI 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S++  + ++G  A+ L   DE++ V+    E+DI L TK G  +RF    +R   GR S+
Sbjct: 633 SEYQNVRKTGLTAIVLRDNDELIEVKATNGEDDIFLITKKGMTIRFNEKNVRQ-TGRTSM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI L K D VISM                                            
Sbjct: 692 GVKGIHLGKDDIVISM-------------------------------------------- 707

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                    ++  + + IL V+E G GKRT   +F + NR GKG++   ++  ++ G LV
Sbjct: 708 ---------QMSSQGEKILLVTENGMGKRTLISEFNVQNRGGKGVKCYKIT--DKTGDLV 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
               V D + I++++ +G +IR     I    R T GV + +     + +V S+  +++ 
Sbjct: 757 GAKIVTDENDIMIITTEGIIIRTSCEGISTLGRVTSGVKVINLNYDNNVKVASMTEVQKE 816

Query: 901 EIVD 904
           E  D
Sbjct: 817 EFDD 820


>gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231]
 gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002]
 gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19]
          Length = 854

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/904 (37%), Positives = 513/904 (56%), Gaps = 93/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ ++    E    I  + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDLLGG--EGFDRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS 
Sbjct: 59  YDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECRL   A  ++ D+ ++TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD D  A     M  ++GPDFPT   I+G  G
Sbjct: 179 GIAVGMATNIPPHNLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGSQG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE+  G R+ IV+TE+PYQVN   M+  IAE VR+ ++  I
Sbjct: 239 INDAYTTGRGSIRMRGVTSIEEE-GSRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGI 297

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT++ L +A  RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 358 QMLRYYVTHQIEVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARS 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + E+Q  AIL ++L RL  L R  I +
Sbjct: 418 GLID--------------------------LLTIDEIQADAILAMQLRRLAALERQKIID 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + IEI +  DIL+   R   I++ EL  +  +    RRT+I+    D+ +ED I R
Sbjct: 452 ELAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G
Sbjct: 572 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQL---QSYEDAPYLVLATAQG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++LSD+      G IA+ L   D+++    C+ ++++LL ++ GQ +RF     ++
Sbjct: 629 RVKKSRLSDYESNRSGGLIAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQL 688

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M +V                                 
Sbjct: 689 RPMGRATAGVKGMRFRGDDQLLAMTVVR-------------------------------- 716

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 + ++L  +  G+GKRTS  ++    R G G+     + 
Sbjct: 717 ---------------------SDAYLLVATSGGYGKRTSLEEYSQQGRGGLGVVTFKYTP 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+A   V+++DQI  ++  G +IR  VN+IR +SRAT GV + +      ++++
Sbjct: 756 --KRGKLIAAVVVDEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGVELLAI 813

Query: 895 ERIR 898
           +R  
Sbjct: 814 DRNV 817



 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 101/250 (40%), Gaps = 6/250 (2%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   + + D +  V    + +  +   + G      I  I+  
Sbjct: 372 VRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARSGLIDLLTIDEIQAD 431

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           A       R  +L +   +  +A +    ADY + +   +   A  R    +       +
Sbjct: 432 AILAMQLRRLAALERQKIIDELAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKYGDE 491

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +     +   ++L  +E  ++T++  G+ KRT    ++   R GKG+R  ++ + +
Sbjct: 492 RRTQIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDD 551

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVS 893
               +   F  + +D I+  ++ G + R+   E+  ASR  +G  + +  +   +ER+  
Sbjct: 552 ---VVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQ 608

Query: 894 VERIRESEIV 903
           V +++  E  
Sbjct: 609 VIQLQSYEDA 618


>gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 825

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/892 (40%), Positives = 537/892 (60%), Gaps = 86/892 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ K+T+D++ NYD +  EP+VL AR P++LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG VI+GR+GI +AY +G+G+
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V+R  ++IE+    RE+I+VTEIP+ VNKA +++KIAEL R+K I  I  +RDESDR G
Sbjct: 242 VVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E+
Sbjct: 302 MRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQED 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L+KA  RAH+L GL IA+ ++DE+V IIR S + + A+  L+ R       
Sbjct: 362 VVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L ++I + 
Sbjct: 415 -------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H G
Sbjct: 456 KDILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S +R Q RGG+G  G+ ++D+DF+  L   STH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L L++GE+I  ++  PE      +  + F TK G V+R  + +F 
Sbjct: 576 PEYSRTAKGLPIINLLQLDKGEKIQAMINVPE---GHEDGNLFFITKMGVVKRTSVEEFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  SG IA+ L   DE+ +V T   + +I++ T +G    F  S +RV   R++ GVRG
Sbjct: 633 NIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHMGYAASFKESDVRVMG-RSAAGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D V+                                                  
Sbjct: 692 INLRENDYVVG------------------------------------------------- 702

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                E+      +L +SE G+GKRT+  ++ I  R GKGI  T + K N  G L  +  
Sbjct: 703 ----SEVLKPGAEVLVISENGYGKRTAVSEYPIKGRGGKGILTTKLGKKN--GPLAGMTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V+    I+L++  G +IR    ++    RAT GV +    + + V S+  + 
Sbjct: 757 VDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVP 808



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 140/454 (30%), Gaps = 45/454 (9%)

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +   +   ++   +    A   L   +     Q+        L+        L       
Sbjct: 389 DHIDEIVNIIRNSESSDIAKATLISRFELDDKQA-----QAILDMRLVRLTGLERDKVEQ 443

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
                 V +   K +L K     H+     I    LD   R         TA   +    
Sbjct: 444 EYQDLLVKIADYKDILAKPERIDHI-----IYTELLDIQKRFGDDRRTEITASEVVSIED 498

Query: 422 WNASDIKDLIDLIDDSSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +  + ++++  +  + Y                R I  + +     + R    +  + L
Sbjct: 499 EDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYL 558

Query: 481 GIEIKECLDILSSRSRLLGI--------IKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
                +          +           I   L   K            E +  M +   
Sbjct: 559 LFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQLDK-----------GEKIQAMINVPE 607

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +  ++ +G VKR  +  +   R    G   + +RD D ++++       +++  
Sbjct: 608 GHEDGNLFFITKMGVVKRTSVEEFSNIRNS--GLIALTLRDGDELSNVLTTDGKQNIIIG 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           + +G+    K   + +    A G   IN+   +              E       V+  +
Sbjct: 666 THMGYAASFKESDVRVMGRSAAGVRGINLRENDY---------VVGSEVLKPGAEVLVIS 716

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  +S++    R GK  +      +   +  +       DI+L T  G  +RF 
Sbjct: 717 ENGYGKRTAVSEYPIKGRGGKGILTTKLGKKNGPLAGMTVVDGTTDIMLITTDGIMIRFK 776

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
              +    GR ++GVR I L +GD V S+  V +
Sbjct: 777 TEDVSQ-TGRATMGVRLIKLGEGDSVASLTAVPN 809


>gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
 gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
          Length = 847

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/891 (40%), Positives = 542/891 (60%), Gaps = 86/891 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCAR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARV 61

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYTECRL K
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNLGE
Sbjct: 122 MGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGE 181

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + IE
Sbjct: 182 VIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAEIE 241

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +    ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQG R+V+++KR 
Sbjct: 242 -SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKRD 300

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RR ++ L
Sbjct: 301 ANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQFDL 360

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++RAH+L  L  A  N+DEVVRIIR S  P  A++ L +R                 
Sbjct: 361 KKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKR----------------- 403

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        E+Q++AI+++RL++LTGL  D +  E   L   IK+  +IL++  R 
Sbjct: 404 ---------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERC 454

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ ++
Sbjct: 455 KEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFK 514

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G+A
Sbjct: 515 EQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRA 574

Query: 618 LINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + N+LSL  G+ +   +     +D+   ++ YVVFATK G V++  L  + +   +G IA
Sbjct: 575 IQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--D 733
           + ++  DE++ V      N++++  + G+  RF  S IR    R S GVRG+ L     D
Sbjct: 635 ININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTMG-RVSTGVRGMRLDDDGQD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ M +V     +                                              
Sbjct: 694 EVVGMIVVNDPVKE---------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LVA+  V D++ +
Sbjct: 708 -----TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
           ++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++  SE+ 
Sbjct: 761 MIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEME 811


>gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237]
 gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237]
          Length = 844

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/901 (41%), Positives = 555/901 (61%), Gaps = 86/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV     +
Sbjct: 3   EGEKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A I+N DI++D L+  I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKASFEEVQ-GRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +KR A  +++LN LY+YT+LQS FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YIIKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  LM+R           
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I +  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL  VK +    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMEIIKEELAEVKAKYGDERRSEINFAGGDLSMEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 ALSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++S+   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 SSKGRAIQNLISIESDDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   DE+L  +  T  ++I L  K G+ +RF  S  R    RN+ GVRGI+L
Sbjct: 636 QNGINAIGIREDDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPMG-RNASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V + + +                                         
Sbjct: 695 ANDDDEVIGMVSVQNLEEE----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R++NR GKG++   ++  ++ G LVA+  V+
Sbjct: 714 -----------ILVVSEKGYGKRSSIEDYRVTNRGGKGVKTISIT--DKTGGLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
           D+D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ ++ + VDE E
Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDELE 820

Query: 908 S 908
            
Sbjct: 821 E 821


>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6]
 gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6]
          Length = 797

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/882 (39%), Positives = 526/882 (59%), Gaps = 88/882 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V+IT+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  ++ Y K AR
Sbjct: 4   VQVNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSAR 63

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+VMGKYHPHG+AAIY+ + RMAQ +S+R  LI+GQGNFGS+DGDP AA RYTE RL 
Sbjct: 64  VVGDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLS 123

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  +L D+ K+TVDF PNYDGS +EP VL  + PN+L+NG  GIAVGMATNIP HNL 
Sbjct: 124 KIAEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLN 183

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+    + +IDNP   +  LM  + GPDFPTG  I+GR GI++AY TG+GSI+++  S I
Sbjct: 184 ELAGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIVGRAGIESAYLTGKGSIIMQAKSEI 243

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+ +    +I+ +E+PYQVNKA ++E +AE+V+  R+  I+DLRDESD++G R+V+++K 
Sbjct: 244 EEGAKS-TRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKT 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G +A+V+LNQL+++T+LQ+ + +N + L    P   +L   L+ ++ +R  VV RRT++ 
Sbjct: 303 GFNANVVLNQLHKHTALQTSYGINNMVLVDGMPRILSLKETLEQYIYYRSIVVERRTRFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+ A  RAH+L GL IA+ N+DEV+RII+ +P P  AR  L++                 
Sbjct: 363 LDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIE----------------- 405

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q +AIL++RL RLTGL ++ I +E   L   I     ILSS   
Sbjct: 406 ---------AFLLSEEQAKAILDMRLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLE 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L IIK EL  +  +    RRT+I+E   ++ +ED I  E++ VT++  GY+KR P++ Y
Sbjct: 457 ILSIIKDELTELISKYGDERRTQIIEADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGG+G  G   + E+FVTD+   ST   +LFF+  G  +  KV+ +P     ARGK
Sbjct: 517 RMQRRGGRGVIGAETKTEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGK 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           +++N+L L   ERI   +P    ++     Y+V  T+ GN+ +  L  F    + G  A+
Sbjct: 577 SIVNLLQLEPDERIAGAIPVKSFQAG----YIVLVTRSGNIVKMPLQAFSNPRKGGIKAV 632

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D ++S +    E ++L+ TK G+ +RF    +R  + R ++GV+ ISL  GD++I
Sbjct: 633 NLK-GDSLVSAKLTNGEKELLVATKFGKAIRFKEGDVRA-SNRGTMGVKAISLNMGDELI 690

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM ++                                                       
Sbjct: 691 SMDVIEPG---------------------------------------------------S 699

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LTV+ +G+GKRT   ++    R GKG++  D       G +     V++ D++++ 
Sbjct: 700 GSTLLTVTNQGYGKRTELEEYPQQRRGGKGVKNID----ARKGYVCCTTTVSEEDELLVT 755

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  G +IR+P ++IR+  R+T+GV I +    + V ++ RI 
Sbjct: 756 TRDGVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARIN 797


>gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 832

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/901 (42%), Positives = 556/901 (61%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            ++   +  + I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+  NK
Sbjct: 2   NQKAARVEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YD + RMAQD+S R  LI+G GNFGSVDGD  AA R
Sbjct: 62  PHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+      LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGM+T+
Sbjct: 122 YTEARMSSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG V +I  P+I    LM II+GPDFPTG  I+GR  I  AY TGRG + 
Sbjct: 182 IPPHNLGEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIMGRGSIYKAYKTGRGKLT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE    +R+QI+V E+P+QVNKA +++KIA LV++++I  I+D+RDESDR G R
Sbjct: 242 VRAKTRIEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ +V+LNQLY+++ LQ  FS  M+AL   +P+  +L  IL+ ++  +++V+
Sbjct: 302 IVIELKREATPEVVLNQLYKHSRLQITFSTIMIALVNNEPKVLSLKEILEHYLEHQKKVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKY L+KA DRAH+L G  IA+AN+DE+V +I+ + + +TAR  LM           
Sbjct: 362 TRRTKYDLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTARIALMD---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AIL +RL  LTGL R+ I  E + L  +I     
Sbjct: 412 ----------------DYELSEIQANAILRMRLQSLTGLERNKIDTEYDELQAKITRYRS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +LL I+K+E+L +KD+ +  RRT+I++ + D+E ED I  E +V+T++H GY+K
Sbjct: 456 ILADEDKLLNIVKKEILEIKDKYNDKRRTKIMDKVTDLEIEDLIEEEQIVITMTHQGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L +YR+QRRGGKG  G+  ++EDFV ++F  +TH   LFFS+ G VY+ K +++P  
Sbjct: 516 RMALDLYRSQRRGGKGVIGISTKEEDFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QARG A+IN+L L + ERIT ++P  E      + Y++ ATK+G +++  L D    N
Sbjct: 576 GRQARGTAIINLLELKEEERITAVIPVKE---FPEDAYLIMATKNGLIKKTSL-DAYDTN 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G I + L   DE++ V    ++ +I+L +K  + + F  S +R    RNS GVRGI L
Sbjct: 632 YTGLIGINLRENDELIGVRIIDEDENIILVSKNAKAIHFNESDVRSVG-RNSYGVRGIRL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D VI M I                                                 
Sbjct: 691 SEEDYVIDMGI------------------------------------------------- 701

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + +L ++E G+GK+T   ++RI NR GKGI   ++++ N  G L A   V+ 
Sbjct: 702 ----DSAGEHLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKN--GQLAAAKIVDA 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           N ++++++ +G +IRV   EI    R T GV I +  +D++VVS+ RI E EIVDE E  
Sbjct: 756 NSEMMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVSLARINEDEIVDELEEL 815

Query: 910 E 910
           +
Sbjct: 816 D 816


>gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
 gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
          Length = 883

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/866 (40%), Positives = 532/866 (61%), Gaps = 28/866 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +   I + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L+ GE+I  I+P  + ++     ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAE---HFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L +   VI+M +     A+  E       ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGSVLTATENGYGKRTPIAE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   +  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVFPVNDND 851
           G+   +V +  ++  L  +   + ++
Sbjct: 838 GVTLINVDEGTKLSGLQRIVETDADN 863



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 103/235 (43%), Gaps = 13/235 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        E  +   +  G VK+  L+ +   R+   G   V + + D++    
Sbjct: 636 EKINVILPVRQFDAEHFIFMATARGTVKKTALTEFSNPRKA--GIIAVDLDEGDYLIGAA 693

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---- 637
           +      V+ FS  G   +     +     QARG   +  ++L++ + +  ++  P    
Sbjct: 694 VTDGQHDVMLFSDAGKAVRFDENDVRPMGRQARG---VRGMNLDESQTVIAMLVAPAETA 750

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQEN 694
           E   + +   V+ AT++G  +R  ++++ +  R   G IA++       +++    + ++
Sbjct: 751 EQTEAGSPGSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPDD 810

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           +I+L T  G  +R  ++ IR    R + GV  I++ +G ++  +  ++  DAD  
Sbjct: 811 EIMLITTGGVLIRTRVAEIREMG-RATQGVTLINVDEGTKLSGLQRIVETDADNG 864


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/862 (43%), Positives = 534/862 (61%), Gaps = 46/862 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E  +   + Y++ AT +G V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSNGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMS 759
                 ++R    R + GVRGI L +G +V+S+ +      +L    +   +   +    
Sbjct: 723 TGEEVLSLRPMG-RTATGVRGIRLEEGQKVVSLIVPKGDGAILTVTENGYGKRTQLSEYP 781

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           A+ R   G      S +N + V                  I+ +S+KG   RT +    I
Sbjct: 782 AKSRATKGVVSIKVSERNGAVV--------GAVQVGSNDEIMLISDKGTLVRTPAKGVSI 833

Query: 820 SNRSGKGIRATDVSKINEIGAL 841
             R+ +G+     +   ++  L
Sbjct: 834 IGRNTQGVTIIRTASDEKVVGL 855


>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
 gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
          Length = 823

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/903 (41%), Positives = 542/903 (60%), Gaps = 84/903 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ ++ LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK+EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKEELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF  S +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVSVTTGNQDILIGTKLGIAIRFSESDVRLM-KRAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLNTGDVVVGAGVLNADE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  +EI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818

Query: 904 DEA 906
           DE 
Sbjct: 819 DEE 821


>gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 828

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 536/900 (59%), Gaps = 87/900 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +      +SI + ++NSYL YA++VI+GRA+PD+RDGLKPVHRR LF M +MGV +NK 
Sbjct: 2   SDTSKTIDISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GK+HPHG++A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RY
Sbjct: 62  YKKSARIVGDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL DL KDTVDF  NYDG+  EP VL  R P +LVNG  GIAVGMATNI
Sbjct: 122 TEIRLSKISDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E++     +ID P  D + ++  + GPDFPT  +I+G   I+ AY TGRGSI I
Sbjct: 182 PPHNITEIISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKDIQTAYRTGRGSITI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE+T   +  I+V EIPY VNKA+M+EKIA+LV+EK+I  I DLRDESD+ G RV
Sbjct: 242 RARVLIEETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+G + DV+LN+LY++T LQ+ F  NMVA+   KP+  +L  IL+ F+  R  VV 
Sbjct: 302 VIELKKGENVDVVLNRLYKFTQLQTSFGFNMVAIVDGKPQTLSLREILEEFLKHRVTVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++LL KA  R H+L GL  AV N+DEV++ I+ S +   A+  L  +          
Sbjct: 362 RRTQFLLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQ---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E+Q ++ILE+RL +LTGL  + ++ E  ++  +I+    I
Sbjct: 412 ----------------FGFTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +RS ++ +IK EL  V D+    RRT I  GL + EDED I   + VVT++H GY+K 
Sbjct: 456 LGNRSVMMSVIKDELQDVLDKYGDDRRTEIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKA 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y AQ+RGGKG++G   +DEDFV  L + + HT ++FF++ G V+  KV+ LP   
Sbjct: 516 TLLSSYVAQKRGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQ 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+L   E + +++  P   +  +  Y+ FATK G +++  L +F    R
Sbjct: 576 RDAKGRHISNLLTLEPEEFVASVLALP---AETDGKYLFFATKSGTIKKTSLEEFKS-GR 631

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG +A+KL   DEIL+ +  T E+ ++L+TK G+ ++F  +  R    R++ GVRGI+L 
Sbjct: 632 SGIVAIKLRDGDEILTADITTDEDTVILSTKAGKTIQFSSTDARPMG-RSTSGVRGITLE 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+++SM ++  A                                              
Sbjct: 691 ARDELMSMEVLTGA---------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   +IL+V+  G+GKRT   ++R+  R GKG++   VS   + G +V    V DN
Sbjct: 705 -------PYILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSP--KTGFVVGAKQVTDN 755

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D +++++     IR  V  I    R T GV +  T  D+ +++   I+E  I +++++ E
Sbjct: 756 DDVMIITRSAKTIRTEVQGISKMGRDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNE 814


>gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
 gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
          Length = 849

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/903 (41%), Positives = 556/903 (61%), Gaps = 86/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++GV  +  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD   N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A IDN DI++D L++ ++ PDFPTG +I G  G++ A+ TGRG IV+R
Sbjct: 183 PHNLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIYGYDGVREAFKTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E+    RE I+VTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR+G R+V
Sbjct: 243 GKAVMEEVQ-GRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R EVV R
Sbjct: 302 YILKRDAIPNIVLNKLYKYTALQSSFSVNNIALVHGRPQLLNLKDMIHYFVEHRHEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA +RAH+L GL IA  N+DEV+ IIR S N E AR  L++R           
Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E + +   I++  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++SR + IIK+EL  +KD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ANKSRRMNIIKEELEVIKDKYGDERRSMIEYAGGDVSIEDLIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+ G   R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKRQNRGGVGQKGSATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ + +++   +      DE   NN YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEKDDKVKAFICTQNLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + ++L  K G+ +RF     R    RN+ GVRGI L
Sbjct: 636 TNGINAITIKDGDELLEAKLTTGNSQVMLAVKSGKAIRFEEEKTRPMG-RNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   +++                                         
Sbjct: 695 ADDNDEVVGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V 
Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA-E 907
           D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++R  +  +EA E
Sbjct: 761 DEDGLMIINKSGIAIRMAVADLRVMGRATQGVRLINIKGKDSIAAVAKVRNEQQEEEAIE 820

Query: 908 STE 910
             E
Sbjct: 821 GAE 823


>gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
 gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
          Length = 876

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/910 (39%), Positives = 539/910 (59%), Gaps = 92/910 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +++D++    I  V +  +M++SY+ YA++VI  RA+PD+RDG+KPV RRIL+ M+++  
Sbjct: 1   MATDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNN 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + KCARI G+ MGKYHPHG+++IY A+  MAQDW++R  L++G GNFGSVDGD  
Sbjct: 61  GPDKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K +  ++ DL KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVG 180

Query: 186 MATNIPTHNLGEVVDGC-----VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           MATNIPTHNL EV+          + ++ D +LD +M+I++GPDFPTG  ILG  GI+ A
Sbjct: 181 MATNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTRGIEEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +RG+S IE     + +I++TE+PY VNKA ++EKIAELVR+K+I  I  + 
Sbjct: 241 YRTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGIS 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S R+G R+VI+++R A+A+VILN+LY++T LQ  F V M+AL   +P+   L+ IL+ 
Sbjct: 301 DHSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVDNQPKVLNLLQILEY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEVV RRT+Y LNKA++RAH+L GL  A+  +DEV+  IR S     A+  L+ +
Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +E Q +AI+++RL  LTGL RD ++ E + L
Sbjct: 421 --------------------------FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE   IL+ R  LLG+I+ E+  + D+    RRTRI   + D+  ED I  ++ V+
Sbjct: 455 QKKIKEYQAILADRKVLLGVIRDEIQIISDKFGDERRTRIGHDVYDITTEDLIPNDNNVL 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR+    + AQ RGGKG  G    + D++ DLF+  +H  ++FF++LG  Y 
Sbjct: 515 TMSHLGYIKRMSPENFHAQNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYT 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG A+IN+L L  GE+IT I+P  E +    N Y+  ATK G V++ 
Sbjct: 575 LKAYEIPEASRTARGTAIINLLQLMPGEKITAIIPVSEFKE---NQYLFMATKKGMVKKT 631

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +  F  + +SG  A+ L   D+++ V+    + D+ L T  G  +RF    +R   GR 
Sbjct: 632 PVPAFRNMRKSGLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRA-TGRG 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GVRGI L   D+VI M +                                        
Sbjct: 691 SMGVRGIWLDGEDEVIGMQL---------------------------------------- 710

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                        + + +++L  SE G GKRT   +FRI  R GKGI     ++    G 
Sbjct: 711 -------------QAQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNER--TGK 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV V  VND D+++L++  G +IR+ V+++ +  R+  GV +      + V S+ ++R+ 
Sbjct: 756 LVGVKAVNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLMDVM--DSVASIAKVRKD 813

Query: 901 EIVDEAESTE 910
           +  +  E ++
Sbjct: 814 DSDEGEEDSD 823


>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 824

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 541/906 (59%), Gaps = 84/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I +E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   ILSS +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILSSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVQEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV       DILL TKLG  +RF  + +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDHLISVNVTNGSQDILLGTKLGIAIRFSENDVRLM-KRAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLNAGDVVVGAGVLNADE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +V+V
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVSV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGSEIE 818

Query: 904 DEAEST 909
           ++A   
Sbjct: 819 EDATEE 824


>gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472]
 gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472]
          Length = 866

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/862 (43%), Positives = 540/862 (62%), Gaps = 34/862 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D    K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +W
Sbjct: 2   TDNLFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDW 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K ARI G+V+GKYHPHG+ A+YD + R+AQD+SLR  L++GQGNFGSVDGD  AA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + AH LL D+ K+TVDF PNYDGS  EP++L A+ PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EVVD C+A++ N D+ +D L++II  PDFPT  +I G  G+K  Y TGRG 
Sbjct: 182 TNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGR 241

Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +++R  +H E    GDRE I+V EIPYQVNKA +LE+I+ELVR+K+I  I+DLRDESD+ 
Sbjct: 242 VIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDKS 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKRG   +V+LN L++ T LQ  F +NMVAL   +P    L  IL+ F+  R 
Sbjct: 302 GMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQPRLLNLKQILEEFLRHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S  P  A+  LM R+W +S 
Sbjct: 362 EVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRSSL 421

Query: 427 IKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++D++  ++         D ++ +  DG  +LS+ Q +AIL++RL RLTGL +D I  E 
Sbjct: 422 VEDMLSRVEGDKARPENIDPAFGMKEDG-YHLSDTQAQAILDMRLQRLTGLEQDKIVGEY 480

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I + LDIL+   R+  II +EL +++ +   PRR+ I     D+  ED I  +D
Sbjct: 481 REIMDVILDLLDILAKPERISQIIGEELTAIRAQFGDPRRSEIEPYGGDINIEDLITPQD 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT+SH GY+K  P+  Y +QRRGG+G+     +D+DF+  LF+ +TH  VL FSS G 
Sbjct: 541 MVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSRGR 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y  KV+ LP G  Q+RGK ++N+L L +GE+I  ++P  E     ++ +V   T +G V
Sbjct: 601 CYWRKVYDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKEFR---DDQFVFMCTANGTV 657

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L DF +   +G IA+ LD  D ++ V     ++ I+L +  G+ VRF  + +R   
Sbjct: 658 KKTPLVDFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSETDVRPMG 717

Query: 718 GRNSVGVRGISLAKGDQVISMA--------IVLHADADYDERICYMKHMSAQRRLISGDT 769
            RN+ GVRG+ L    QVIS+         ++  +D  Y +R C        R       
Sbjct: 718 -RNATGVRGMMLGDDHQVISLLVSNSEQQMVLTASDGGYGKRTCVGDFRRTSRGTQGVIA 776

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            ++T       V  ++ EE           I+ ++  G   RT   + R + RS +G+R 
Sbjct: 777 MDLTDKTGLKLVAASLVEET--------DDIMLITTGGVLIRTKVAEVRETGRSAQGVRL 828

Query: 830 TDVSKINEIGALVAVFPVNDND 851
            ++ +  +   L+ +  V +++
Sbjct: 829 INLDEGEK---LIGLEIVAESE 847


>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
 gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
          Length = 834

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/905 (41%), Positives = 547/905 (60%), Gaps = 93/905 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V+I +EM++ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K  
Sbjct: 6   EYDRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPT 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ A+YDA+ RMAQ++S R + I GQGNFGS+DGD  AA RYT
Sbjct: 66  RKSARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF PN+D S  EP VL AR P++LVNG  GIAVGMATNIP
Sbjct: 126 EAKMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A IDNPDI +D LM  I+GPDFPT  ++LG++GIK AY TGRG I IR
Sbjct: 186 PHNLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILLGKSGIKEAYRTGRGRIKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
               +E T   R+QIVVTEIPY VNK+ ++EKIAELV+EKR+  IADLRDE+D ++G R+
Sbjct: 246 SKVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRI 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP-------ERFTLIGILKAFVA 363
           VIELKR A+  +ILNQLY++T LQ  F V M+AL G +        +   L  +L  +V 
Sbjct: 306 VIELKRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVE 365

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E++ RRT + L KA  RAH+L GL IA+ N+DEV+ +IR + + + A+ +LM+R   
Sbjct: 366 HQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMER--- 422

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q +AIL++RL RLTGL R+ I  E   L   
Sbjct: 423 -----------------------FALTEIQAQAILDMRLQRLTGLEREKIEEEYAELQKM 459

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+    +L IIK EL  +K++    RRT     + D + ED I  E++V+T++
Sbjct: 460 IAEYKAILADEQLVLNIIKDELTEIKEKYGDERRTSFDIDVEDFDVEDLIEEEEVVITMT 519

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H+GYVKR+    YR+Q+RGGKG + +  R+ DFV  LF  +TH  +LFFS+ G VY+ K 
Sbjct: 520 HIGYVKRISADTYRSQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKA 579

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P G   ARG A++NIL L+  E+ITT++P  E  +   +  ++ ATK G +++  L+
Sbjct: 580 FEVPEGGRTARGTAIVNILQLDPDEKITTMIPVKEFTA---DKCLIMATKQGIIKKTDLT 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++    ++G I + L   DE+++V    +  DI++ T+ G  +RF    +R    R S+G
Sbjct: 637 EYDSSRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPL-KRTSIG 695

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L   D V+ M IV                                          
Sbjct: 696 VRGIELRDDDVVVGMDIVSD---------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        + F+L VS+ G+GK TS   +R   R GKG++   V+K  + G LV 
Sbjct: 716 -------------DLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTK--KTGELVG 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              ++ + +I++++++G +I++  N+I    R T+GV +      E++ ++ ++ + +  
Sbjct: 761 FCVISRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKVYKEDPE 820

Query: 904 DEAES 908
           ++ E 
Sbjct: 821 EDIED 825


>gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 831

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/893 (41%), Positives = 548/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +E RI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+     +    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAK--KEDILDKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR    R++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                                 
Sbjct: 693 EEDWVVGASRIND----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ N
Sbjct: 706 ------KQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+   ++  +  
Sbjct: 758 EDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 108/259 (41%), Gaps = 23/259 (8%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RR +        R+  +   L + D +  V    + ++  +  +     RF +S      
Sbjct: 361 RRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSE----- 415

Query: 718 GRNSVGVRGISLA-----KGDQVIS----MAIVLHADADYDERICYMKHMSAQRRLISGD 768
            R S  +  + L      + D++ S    +  ++   AD   +   ++ +   +  +   
Sbjct: 416 -RQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERIEAII--KEEMEEI 472

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  + +    + G +     ++L  +E  ++T+S  G+ KR +  +FR   R G+G++
Sbjct: 473 KRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQ 532

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
            T V+  + +  LV+    + +D ++  ++ G + R+   EI    RA KG   + +   
Sbjct: 533 GTGVNDDDFVRELVST---STHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKL 589

Query: 886 AKDERVVSVERIRESEIVD 904
              E + ++   ++ +I+D
Sbjct: 590 DDGETIQTIINAKKEDILD 608


>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
 gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
          Length = 822

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/904 (42%), Positives = 540/904 (59%), Gaps = 84/904 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ S  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILGSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF    +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLM-KRAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLNAGDVVVGAGVLNTDE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  +EI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818

Query: 904 DEAE 907
           +E E
Sbjct: 819 EEVE 822


>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
          Length = 841

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/897 (42%), Positives = 552/897 (61%), Gaps = 92/897 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE  E+ I  + I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K     GE +  +HPHG+AA+YD+L RMAQD+SLR  L++G GNFGS DGD  AA
Sbjct: 62  DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K +  +L D+ KDTVDF+PN+D    EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           TNIP HNLGE +DG  AV+DNP+I +D L M+ I+GPDFPT A I+G+ GI++AY TGRG
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKRGIRDAYKTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +++R  + IE+  G+R +IVVTEIPY VNKA ++EKIA+LV++K+I  I+ ++DES R+
Sbjct: 242 RLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGRE 301

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKA 360
              R+VI+LKR A+ +V+LNQLY+ T LQ  FSVNMVA+       Y+P    L  ++  
Sbjct: 302 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDY 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A +E+V+ RRTK+ L+KA  RAH+L GL IA+ NLDEV+RIIR S     A+ +L +R
Sbjct: 362 YIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSER 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q++AI+++RL RLTGL R+ + +E N L
Sbjct: 422 --------------------------FGFSDKQSQAIVDMRLGRLTGLEREKLESEYNEL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IK   D+L++   +  IIK EL  +K++    RRT+I     +++ ED I  ++ V+
Sbjct: 456 LEKIKYFRDVLANEILVHQIIKDELTVIKNKYADERRTKIEIDEDEIDIEDLIQEQESVI 515

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+P   Y++QRRGGKG  G+  R+EDFV +LF+ STH  ++FF++ G VY+
Sbjct: 516 TMTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYR 575

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P    QA+G A++N+L LN  E++TT++P  E +     LY+V ATK+G V++ 
Sbjct: 576 LKAYEIPESGRQAKGTAIVNLLQLNGDEKVTTVIPIQEYKE---GLYLVMATKNGLVKKT 632

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L ++  I + G  A+ L   DE++ V+      DI+L+T  G  +RF  +  R    R 
Sbjct: 633 DLMEYDSIRKGGLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPIG-RV 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV+G+ L +GD +I M                                          
Sbjct: 692 SQGVKGMELDEGDFIIGM------------------------------------------ 709

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                      E+      +L V+E GFGKRT   ++++  R GKG+    +++  + G 
Sbjct: 710 -----------EVCTDNTTLLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGK 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + +  V+++D I+L+S  GT+IR+ VNEI I  RAT+GV +   ++   VVSV R+
Sbjct: 757 SIGMLLVSEDDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVARM 813


>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
          Length = 844

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/914 (41%), Positives = 546/914 (59%), Gaps = 95/914 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +++     I    I DEMQN Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+
Sbjct: 1   MDTNDVTYDRIIHRDINDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K+Y K ARI G+ MGKYHPHG+++IY A+ RMAQ++S R  L++GQGNFGS+DGD P
Sbjct: 61  GSDKQYRKSARIVGDTMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ KDTV+FRPN+D S +EP VL +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKMTALMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPD----------IDLDALMEIIRGPDFPTGAVILGRT 235
           MATNIP HNL EVV+G + +IDN             +++ LM II GPDFPTGA I GR 
Sbjct: 181 MATNIPPHNLTEVVNGVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIYGRY 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI  AY TGRG + ++  + IE   G + +IVVTEIPY VNK++++EK+A+LV+E++I  
Sbjct: 241 GIDQAYRTGRGKVKVKAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I D+RDESDR G  +VIEL+R  +  VILNQLY+YT LQ  FS+NM+AL   KP+   L 
Sbjct: 301 ITDIRDESDRNGISMVIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDKPKVLNLK 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++  ++EVV RRT++ LNKA  RAH+L GL  A+ N+D VV +IR S N + A+ 
Sbjct: 361 QILEEYLKHQKEVVTRRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKD 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+                           + L+E+Q +AI+E+RL  LTGL R+ I  
Sbjct: 421 KLME--------------------------AIELTEIQAQAIVEMRLRALTGLEREKIDQ 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+    IL+S  +LL +IK E+  VK +    RRT I     + + ED I  
Sbjct: 455 EYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGDGRRTDITIDEDEYDIEDLIDE 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++ LGY+KR+PL  Y+ Q RGGKG  GV   ++DF+  LF+ +    ++FF++ 
Sbjct: 515 ENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y+ K +R+P     ARG A++N+L L++ E+IT + P  E E   +N ++   TK G
Sbjct: 575 GKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVFPIKEFE---DNTFLTMVTKKG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++  L DF  I + G IA+ L+  DE++ V   T ++ IL+ T+ GQ + F  + +R 
Sbjct: 632 QIKKTPLKDFRNIRKGGLIALSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRP 691

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GVR I+L + D+VI   +    +                              
Sbjct: 692 MG-RTARGVRAINLGETDEVIGATVPKEGEQ----------------------------- 721

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   ILT +EKG GKRT    FR   R GKG+R   +++ 
Sbjct: 722 ------------------------ILTTTEKGLGKRTQIEAFRAQKRGGKGLRINKITE- 756

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G ++ V  V++ D+++L++ +G +IR+ V +I    R  +GV + + A D +VV +E
Sbjct: 757 -KTGCIIGVASVSEEDELLLITSQGIIIRIKVAQISSIGRNAQGVKLINVADDVQVVCME 815

Query: 896 RIRESEIVDEAEST 909
           ++ E  I D  E  
Sbjct: 816 KVNEEFIDDNVEEA 829


>gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
 gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
          Length = 828

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R LL++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 ----QDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   +F    ++G  +RA  + + ++   L+ V   +  D II+ +  G  +R     IR
Sbjct: 623 TEVSEFNNIRQNG--LRALKLKEGDQ---LINVLLTSGQDDIIIGTHSGYSVRFNEASIR 677

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R+  GV      +D+RVV   RI++++ V
Sbjct: 678 NMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQ--NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + +R+       +++       V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATG---VRGVKLREDDRVVGASRIQDNQE------VLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++GV+ + L    ++++  +V   D+   E
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAE 813


>gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735]
 gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735]
          Length = 867

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/913 (40%), Positives = 545/913 (59%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG+A++Y AL RM QDW++R  L++GQGNFGS+
Sbjct: 57  LGIGNTSDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G  G++ A
Sbjct: 177 GIAVGMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  + IE +    ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  
Sbjct: 237 YETGRGRIVMRAKAEIE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DESGRQGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     IL        ++K EL  VKD+    RRT I     +   ED    + +V+
Sbjct: 450 ERQIAYFQQILDDPELCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH+GY+KR PLS +  Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHMGYIKRTPLSEFHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L++   + I  I+      DE   N+ YV+FATK+G V+
Sbjct: 570 LKCFEIPEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR    
Sbjct: 630 KTSLEAYSRPRANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMG- 688

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG+ L  G D+V+ M  V  A+ +                              
Sbjct: 689 RTATGVRGMRLDGGDDEVVGMVTVNEAETE------------------------------ 718

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE+G+GKR+   D+R++NR GKG++   +++  +
Sbjct: 719 ---------------------TVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LV++  V D + +++++  G +IR+ V ++R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVSIKNVTDENDLMIINKSGIVIRLVVADVRVMGRATQGVRLINLAKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
           +  SE+    E  
Sbjct: 816 VMSSELEATVEEE 828



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 112/281 (39%), Gaps = 25/281 (8%)

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R T + + +              V+  +  G VK+  L  Y   R    G   + + D D
Sbjct: 604 RLTTLTDEI--------FNNSHYVIFATKNGTVKKTSLEAYSRPR--ANGVIAINIADGD 653

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            V D+ + +    ++  +  G   +     +      A G  +  +      + +  ++ 
Sbjct: 654 EVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATG--VRGMRLDGGDDEVVGMVT 711

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQ 692
             E E+      V+  ++ G  +R+++ D+   NR GK    L   +    ++S++  T 
Sbjct: 712 VNEAETE----TVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTGRLVSIKNVTD 767

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADAD 747
           END+++  K G  +R  ++ +RV   R + GVR I+LAK + VI+     M+  L A  +
Sbjct: 768 ENDLMIINKSGIVIRLVVADVRVMG-RATQGVRLINLAKKNDVIASVCKVMSSELEATVE 826

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + R  +       ++    +  E    +     E +  EE
Sbjct: 827 EESRAQWANKSEEIKKDTQAEASESAEDEPLVDFEDDNKEE 867


>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
          Length = 822

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/892 (40%), Positives = 552/892 (61%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I    I +EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + ++K
Sbjct: 8   QDIHGRIEDRDIVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDK 67

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+ MGKYHPHG+++IYDA+ R+AQD+S R  L++G GNFGS+DGD  AA R
Sbjct: 68  PYRKSARIVGDTMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMR 127

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    +L D+ K+TVD+ PN+D + +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 128 YTEAKMTKMTGEMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATN 187

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD  +A+I+NP+I+++ L++ ++GPDFPTG +I+G+TGI NAY TGRG I 
Sbjct: 188 IPPHNLREVVDAIIALIENPNIEINDLIKYVKGPDFPTGGIIMGKTGIYNAYTTGRGRIK 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+ S  R++IVVTEIPY VNKA M+EKIA+LVR+K++V I+D+RDESDR G R
Sbjct: 248 LRSKTHIEEISKKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNGIR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+L++  +A +ILNQLY+YT LQ  FSV  +AL   +P+   L  IL  ++  +++++
Sbjct: 308 VAIDLRKDVNASIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVHYLNHQKDII 367

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA+ RAH++ GL IA+ N+DE+++IIR S N   A  +LM+R         
Sbjct: 368 VRRTEYDLKKAKARAHIVEGLLIALDNIDEIIKIIRASYN--DAEEKLMER--------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSEVQ +AI+++RL RL GL R+ + NE   L   I+    
Sbjct: 417 -----------------FDLSEVQAKAIVDMRLRRLQGLEREKLENEYAELLKTIEYLES 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S   ++ IIK+EL  +KD+    RRT       D + ED I  ED+VVT++H+GYVK
Sbjct: 460 VLASDELVMSIIKEELSEIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVVTITHVGYVK 519

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P S Y+ Q+RGGKG + +  R+ DFV  LF  +TH  ++FF++ G VY+ K + +P  
Sbjct: 520 RLPASTYKTQKRGGKGVTALSTRENDFVKHLFFTTTHHYIMFFTNKGKVYRLKGYEIPDA 579

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G A++N+L+L+ GE+IT ++P  E +   ++ Y+V AT++G  ++  L+++    
Sbjct: 580 SRIAKGTAIVNLLALDPGEKITAVIPIKEFK---DDEYLVMATRNGVFKKTSLTEYDSSR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G +A+ L   DE++ V       +I+L T  G  ++F  + +R    R S GV+GISL
Sbjct: 637 KNGIVAINLAEDDELIGVSLTDGNQNIILGTHKGLAIKFNEADVRAIG-RVSKGVKGISL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D +I M I                                                 
Sbjct: 696 KDDDYLIGMDIATD---------------------------------------------- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN- 848
                    ++L+V+EKG+GK T +  +    R+GKG+    ++K  + GAL  +  +  
Sbjct: 710 -------NAYVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTK--KTGALSGMCVIEK 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + D I+++S  GT+IR+  + I    R+T GV + +  +D  + ++ ++   
Sbjct: 761 EKDDIMVISIDGTVIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIAKVPSQ 812


>gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365]
          Length = 891

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/896 (41%), Positives = 539/896 (60%), Gaps = 59/896 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T V+I  EM++S++ YA++VI+ RA+PD RDGLKPVHRRILF    +   WN+ Y+KC
Sbjct: 6   NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKC 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECR
Sbjct: 66  ARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL DL K+TVD++PNYD    EP VL  + PN+L+NG  GIAVGMATNIP HN
Sbjct: 126 MARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  +A++++PD+  + L EI+ GPDFPTG +I GR GI+ A+  GRG++VIRG +
Sbjct: 186 LGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAVVIRGRT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E    +R+ IVVTE+P+ VNK+  +E  A LVR+KRI  I+D+RDESDR+G RVV EL
Sbjct: 246 QFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+  V+LN L++ T+LQ+ F+VNM+A+   +P+  +L   L+ F+  R  VV RR  
Sbjct: 306 KRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRTVVRRRCL 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDL 433
           + L +AR+R  ++ GL +AV  +D V+ IIR S + + A+  LM +R        +    
Sbjct: 366 FELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERAGR 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
             D    + + G ++LS  Q +AIL++RL RLTGL R+ +  E   L         IL  
Sbjct: 426 PADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEITDYLEGILGD 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +L G+I  EL  ++D+   PRRT IV+   ++ DE  I  EDMVVT +  GYVKR  L
Sbjct: 486 DVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTAL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y AQ RGGKG  G    D+DFV D+F+ STH  +L F+++G VY++KV+ LP GS  +
Sbjct: 546 DEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRIS 605

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G+  +N++  L   E +  ++P  E     ++L    AT+ G V++   + F +I  +G
Sbjct: 606 KGRPFVNVIEALQPDEYVVGMLPVKE---FTDDLSAFMATRMGTVKKTVAAAFSRIRVTG 662

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ +D  DE++ V     + D+LL TK GQ +RF    +R    R + GVRGI LA G
Sbjct: 663 IKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPMG-REARGVRGIGLAGG 721

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M++      D                                             
Sbjct: 722 DAVVGMSVFERDCEDA-------------------------------------------- 737

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILTV E G+GKRT    +    R GKG+     ++ N  G +  V  V ++D 
Sbjct: 738 -------ILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERN--GPVSGVRLVGEDDH 788

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +I++S  G LIR+ V +I + SRAT+GV +      E+V S+ER+ E +   ++E+
Sbjct: 789 VIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLERLAEPDDDADSEA 844



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 88/214 (41%), Gaps = 13/214 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + +G VK+   + +   R    G   + + D D + ++ +      VL  +  G   + +
Sbjct: 642 TRMGTVKKTVAAAFSRIR--VTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQ 699

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++     +ARG   +  + L  G+ +  +  F  D        ++   ++G  +R  L
Sbjct: 700 EDQVRPMGREARG---VRGIGLAGGDAVVGMSVFERDCEDA----ILTVCENGYGKRTLL 752

Query: 663 SDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S +    R GK  + + + +    +  V    +++ +++ +  G+ +R  +  I     R
Sbjct: 753 SAYSTQGRGGKGLITIKTTERNGPVSGVRLVGEDDHVIMISSTGKLIRMRVRDI-PVQSR 811

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            + GVR + L  G+QV S+  +   D D D    
Sbjct: 812 ATQGVRLMRLDPGEQVASLERLAEPDDDADSEAV 845


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/842 (45%), Positives = 530/842 (62%), Gaps = 26/842 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W    +  +++ 
Sbjct: 366 IFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I +EL  V+      RR+ I   + D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVSE---FSPEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 SNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ LA  DQV+S+ +      +L    +   +   ++    + R   G      S +N  
Sbjct: 722 GMKLADEDQVVSLIVPSNQGDILTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERNGP 781

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V     EE           ++ +++ G   RT   +     R+ +G+     +    + 
Sbjct: 782 VVGAIQVEE--------GDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTASDESVV 833

Query: 840 AL 841
            L
Sbjct: 834 GL 835



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 166/444 (37%), Gaps = 33/444 (7%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +  +  H+L      +  + E + +++        RR  
Sbjct: 462 LHRLTGLEHEKILDEYKALLEEIAELMHILASTERLMEVITEELELVQA--TYGDERRSE 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 520 ITAAVHDIDMEELIARED----VVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEED 575

Query: 477 LNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDTPRRTRIV--------EGLLDM 527
                +      +IL   +R     +K   L +     T R   IV        E +  +
Sbjct: 576 YIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASR--TARGKPIVNILPLEEGERITAI 633

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   E  +   +  G VK+  L  +   R    G   V +RD+D +  + I    +
Sbjct: 634 LPVSEFSPEKFIFMATGDGTVKKTSLDQFSNVR--ANGLIAVNLRDDDSLIGVDITDGQS 691

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ FS  G V +    ++      A G   +  + L   +++ +++         N   
Sbjct: 692 DIMLFSKQGKVVRFSEDKVRAMGRTAAG---VRGMKLADEDQVVSLIV------PSNQGD 742

Query: 648 VVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R +L ++    R+  G +++K+      ++      + +++++ T  G 
Sbjct: 743 ILTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERNGPVVGAIQVEEGDEMMMITDAGT 802

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +     RN+ GV  I  A  + V+ +  +   +         ++  +  +  
Sbjct: 803 LVRTRVAEVSQVG-RNTQGVTLIRTASDESVVGLQRIDEVEELELPEGEEVEANAETQAP 861

Query: 765 ISGDTEEITSLKNDSSVEGNISEE 788
            SGD     S  +DS+ + + +EE
Sbjct: 862 ESGDLAADDSAADDSAADDSATEE 885


>gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS]
 gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
 gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A
 gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes]
 gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS]
 gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
          Length = 828

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 ----QDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   +F    ++G  +RA  + + ++   L+ V   +  D II+ +  G  +R     IR
Sbjct: 623 TEVSEFNNIRQNG--LRALKLKEGDQ---LINVLLTSGQDDIIIGTHSGYSVRFNEASIR 677

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R+  GV      +D+RVV   RI++++ V
Sbjct: 678 NMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQ--NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + +R+       +++       V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATG---VRGVKLREDDRVVGASRIQDNQE------VLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++GV+ + L    ++++  +V   D+   E
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAE 813


>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
 gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
 gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
 gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/886 (41%), Positives = 534/886 (60%), Gaps = 58/886 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM +SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   PQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ    + LL D+  +TVDF  N+DGS QEPVVL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP++    L ++I GPDFPTG  ILGR+GI++AY +GRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQILGRSGIRDAYTSGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DR+ I+VTE+PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR 
Sbjct: 244 RGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T +QS F  NM+AL   +P+  TL   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGEPQLLTLKQFLTVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA++R H+L GL IA+ NLD V+++IR + +  TAR  L+++      
Sbjct: 364 ETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L  +I +
Sbjct: 418 --------------------FGLSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II++EL  +K    TPRRT I+    ++ D D I  E  ++ ++  G
Sbjct: 458 LQDILARRERIEAIIEEELTQIKTIHATPRRTEIIHDEGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ R  +G++   ++++D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFGAQSRATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+I+   E      ++Y +  T+ G +++  LS F 
Sbjct: 578 PAASRTARGVPIVQMLPIPKDEKITSIVAVSEFRE---DVYFIMLTRKGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L   D++  V+   +E+ I++ T+LG  + F     ++   GR++ GV+
Sbjct: 635 NIRTNGLIAIVLGEGDQLRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPLGRSTRGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L KGD++ISM I+          +   +            T E TS           
Sbjct: 695 AMKLKKGDELISMDILSSQVIAGISTVHEGEEEEDLLENEEELTVEETS----------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        +ILT++  G+GKR     FR+ NR+G G+R       ++   L ++ 
Sbjct: 744 ----------GGPWILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKFKSPSDR--LASLL 791

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            VN+ D++++VS++G +IR  V+ I   SR   GV +    +D+ +
Sbjct: 792 VVNEEDELMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLDEDDAI 837


>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
 gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
          Length = 841

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/892 (40%), Positives = 530/892 (59%), Gaps = 63/892 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLL 143
           YHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DP AA RYTECRLQ    + LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+  +TVDF  N+DGS QEPVVL +R P +LVNG  GIAVGMATNIP HNLGE++DG  
Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--- 260
           A+I NP+I +  LM+ I  PDFPTGA ILGR+GIK+AY TGRGSI +RGV+ IE      
Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQILGRSGIKDAYMTGRGSITMRGVAEIETLRQNG 240

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            ++E I+VT++PYQ NKAA++E+IA++V +K+I  I+D+RDESDRQG R+VIELKR A  
Sbjct: 241 REKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAYP 300

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY++T LQ+ F  NM+AL   +P+   L   L+ F+ FR EV+ RRT+Y L KA
Sbjct: 301 RVVLNNLYKHTPLQANFGANMLALVNGEPQLLNLKQFLQVFLDFRVEVITRRTRYELRKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++R H+L GL IA+ NLD V+ +IR + +   AR+ LM                      
Sbjct: 361 QERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMD--------------------- 399

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+ Q  AIL+++L RLT L  D I  E   L ++I +  DIL+ R R+  I
Sbjct: 400 -----GYNLSQAQADAILQMQLRRLTALEADKIEAEHQDLLLKITDLEDILARRERVYAI 454

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I+ EL  +K    + RRT +V    D++D D I  E   + ++  GY+KR+P++ + AQ 
Sbjct: 455 IEAELTEIKTIHQSDRRTELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQN 514

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           R  +G++   M+++D V        H  VLFF+  G VY    +++P  S  ARG   I 
Sbjct: 515 RATRGKAATKMKEDDGVDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQ 574

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L + + E+IT ++   E      + Y+V  T++G +++  LS F +I  +G IA+ L+ 
Sbjct: 575 LLPIPKDEKITAMLAVSE---FTEDEYLVMLTQNGYIKKTALSAFAKIRSNGLIAISLED 631

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLA-KGDQVISM 738
            DE+  V    QE+ I++ +  G  + F     ++   GR++ GVR + L    D+++SM
Sbjct: 632 GDELRWVRLARQEDSIIVASSEGMAIHFQADHNQLRPLGRSTRGVRAMKLKSDDDKLVSM 691

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            IV                           ++   ++    + E     E   E   +  
Sbjct: 692 DIVS--------------------------SQITAAIAAADTAEDEDDNEEVTENVDQGP 725

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +++ V+ KGFGKR     FR+ NR+G G+RA      ++   L ++  VN  D+++LV+ 
Sbjct: 726 WVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFK--SKADRLASLRIVNPEDELMLVTG 783

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +G +IR  V  I + SR+  GV +     D+ +V+V  +      D  E+ +
Sbjct: 784 RGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAVALVPPPAEEDGLETVD 835


>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
 gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
          Length = 821

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/904 (40%), Positives = 548/904 (60%), Gaps = 83/904 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S +    + I  V I  EM+++Y+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++GV
Sbjct: 1   MSEETLFPEDIQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK Y K ARI G+V+GKYHPHG++A+YD + RM QD+SLR  LI+GQGNFGSVDGD  
Sbjct: 61  AYNKPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL++ +  LL DL K+TV+F+ NYD + QEP +L AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEVVDG + ++D P+ D+  +M++I+GPDFPT   I G+ GI +AY TGR
Sbjct: 181 MATNIPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFITGKQGIIDAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R  + IE +   RE I+VTEIPYQVNK+ +LEKI ELV+EKRI  IADLRDESDR
Sbjct: 241 GRIRMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+E+KRG  A+ ILN+LY++T ++  F V  +AL    P    L  IL+ F+  R
Sbjct: 301 EGMRIVVEIKRGEHAESILNRLYKFTPMEGTFGVINLALVNNSPRVLNLKEILEYFIEHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+V+ R K+ L  A  +AH+L GL +A+ NLDEV+  IR S   + A+ +L+ R     
Sbjct: 361 REIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIAR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   S+ Q +AIL++RL RLTGL  + I  +   +   I 
Sbjct: 416 ---------------------FQFSDEQAQAILDMRLQRLTGLEIEKIIRDYEEVLALID 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL++ SR++ II+ EL  ++++   PRRT I++   +++ ED I  E  V+T+++ 
Sbjct: 455 DLQDILANDSRVIDIIRTELHEIREKYADPRRTIIIDDHEEIDLEDLIADEPTVITLTND 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR P   Y++Q RGGKG+ G+ +++ DFVTD+F+ STH  ++ F+  G VY  K + 
Sbjct: 515 GYVKRTPADTYKSQHRGGKGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYN 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     +RGKA++N + L + E+I+T+ P  E      + +++F TK+G  ++  LS++
Sbjct: 575 IPEQGRNSRGKAIVNFVDLEKDEKISTVFPVRE---FSEDKFLLFITKNGIAKKTPLSEY 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I + G  A+ LD  DE++ V      N +++TT+ G  + F    +R    R S GV+
Sbjct: 632 ANIRKKGVNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRAVG-RVSRGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+S   +                                            
Sbjct: 691 GITLVNNDYVVSAETISKD----------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                    +   +ILTV++ G+GKRT + ++R+ +R GKG      +  N  G +V   
Sbjct: 710 ---------IDPSYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKN--GLVVRGL 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D D+I+L+S +G +IR+    IRI  R T+GV +   ++D+R++SV  + +++  +E
Sbjct: 759 QVVDGDEILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISVA-VAKTDDEEE 817

Query: 906 AEST 909
           A+  
Sbjct: 818 AQQA 821


>gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1]
 gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
 gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A
 gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1]
 gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
          Length = 828

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 ----QDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   +F    ++G  +RA  + + ++   L+ V   +  D II+ +  G  +R     IR
Sbjct: 623 TEVSEFNNIRQNG--LRALKLKEGDQ---LINVLLTSGQDDIIIGTHSGYSVRFNEASIR 677

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R+  GV      +D+RVV   RI++++ V
Sbjct: 678 NMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQ--NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + +R+       +++       V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATG---VRGVKLREDDRVVGASRIQDNQE------VLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++GV+ + L    ++++  +V   D+   E
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAE 813


>gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
 gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
          Length = 866

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/905 (39%), Positives = 538/905 (59%), Gaps = 85/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   +++   +  I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSV
Sbjct: 60  NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ A
Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R    IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +R
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R
Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I  E   L
Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIETEYTDL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I++  DIL+   R+  II QELL + ++    RRT + V  +  +EDED I  E+++
Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           ++++H GY+KR+  S +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VY
Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + +P    QA+G  +IN+L L+ GER+  ++    D ++  +  + F TK G V+R
Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKDS-LFFTTKLGTVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +S+F  I +SG  A+ L   D ++SV     + +I++ +  G  V F  S +R    R
Sbjct: 633 TAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L   D V+                                           
Sbjct: 692 TASGVRGMNLRDKDYVVG------------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L +    +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G
Sbjct: 710 -----------ADLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V+ ++ I++ +D G +IR    ++ I  RAT GV +    +  +V ++ ++ +
Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816

Query: 900 SEIVD 904
            E  +
Sbjct: 817 EEDEE 821


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/909 (40%), Positives = 562/909 (61%), Gaps = 91/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIEVE-NNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR
Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV   R + GV+G+
Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVMG-RTASGVKGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L +   D+V+ M  +   + +                                      
Sbjct: 695 TLDEDNTDEVVGMICIKDKEKE-------------------------------------- 716

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 717 -------------TVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESE 901
            V D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++    E E
Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821

Query: 902 IVDEAESTE 910
           I ++    E
Sbjct: 822 IAEQKAEQE 830



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 116/278 (41%), Gaps = 15/278 (5%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +  +  +   +    ++  +  G +K+  L  Y   R+   G + + +R++D +  + + 
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQ--NGVNAITLREDDGLIQVCMT 658

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           + +  V+  +  G   +     + +    A G   + +   N  E +  ++   + E   
Sbjct: 659 NGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDE-VVGMICIKDKEKE- 716

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTT 700
               V+  ++ G  +R+ + D+   NR GK        +   ++++++  T END+++  
Sbjct: 717 ---TVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIIN 773

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMS 759
           K G  +R  ++ + V   R + GVR I+L K  D++ S+  VL   ++ +E I   K   
Sbjct: 774 KSGIAIRMKVADLNVIG-RATQGVRLINLEKRNDEIASVCKVL---SESEEEIAEQKAEQ 829

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             R+   G           + V+   SE   +    +E
Sbjct: 830 EARQENEGRELSENQASLGTDVDLPESEMDNELDNNEE 867


>gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
          Length = 846

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/884 (40%), Positives = 527/884 (59%), Gaps = 85/884 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + +  V I +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +     Y
Sbjct: 4   DGQKLIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTNAY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   G V+G+YHPHG+A++YDAL RMAQ +SLR  L++G GNFGS+DGD PAA RYT
Sbjct: 64  RKSATTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + +  +L D+ K+TVDF+PN+D   +EP+V+ +R+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EARMSRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG   +IDNPD  L+ L   I+GPDFPTG +I+GR GI+ AY  GR  I +R
Sbjct: 184 PHNLGEVIDGMALLIDNPDATLEELTAHIQGPDFPTGGIIMGRAGIREAYVKGRSRITLR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTEIPY V+KA ++E IAEL +EKRI  I+DLRDESDR+G R+V
Sbjct: 244 AKATIEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+  V+LN+LY Y+ LQ    V M+AL    P    L  IL  ++ F+E+VV R
Sbjct: 304 VELKRDANPQVVLNRLYTYSQLQETVPVIMLALVNGHPRVLPLRDILTEYIHFQEQVVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA +RAH+L GL IA+  +DEV+RI+R S +    +  LM+R           
Sbjct: 364 RTQYDLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMER----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q +AI+++RL +LT L R+ I  EL +L  +I     IL
Sbjct: 413 ---------------FELDDIQAQAIVQMRLGQLTNLEREKIEEELAALETKIANFKAIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R+L I+K+E L VK +    RRTRI     +++ ED I  ED+V+T+++ GY+KR+
Sbjct: 458 ADEQRILQIVKEEALEVKAKFGDERRTRIENVSGEVDVEDLIPVEDVVLTLTNFGYIKRL 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P + Y +QRRGG+G +G+  R+ED   +LF+ STH  VLFF+S G  Y+ K + +P GS 
Sbjct: 518 PAAAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++G  + NIL + Q E IT ++  P+ E    + Y+V  TK G V+R  L ++    ++
Sbjct: 578 TSKGMNVANILPVAQDENITAMIKVPKFEE---DCYLVMVTKKGIVKRTSLKEYDTARKA 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G I + L+  DE++ V        IL+ T+ G  +RF  +  R    R + GV+ ISL  
Sbjct: 635 GVIGILLEEDDELVGVLLTDGSAHILVGTRNGVAIRFVETDARPMG-RAAHGVKAISLEG 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+ + +   A +                                             
Sbjct: 694 GDYVVGVTVPNGAGS--------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L ++E G+GKR    DFR+ NR GKG+ + ++++  + G +  +  V ++D
Sbjct: 709 --------LLLITENGYGKRVPFEDFRVQNRGGKGLTSYNINE--KTGPVAGLRVVEESD 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             + +S  G +IRVPV EI + SR  +GV +    ++ +VV+V 
Sbjct: 759 DALFISSDGVVIRVPVAEIPVYSRYAQGVRVMRVGEETKVVTVT 802



 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 101/261 (38%), Gaps = 15/261 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M        +  +V V+  G VKR  L  Y   R+   G  G+++ ++D +  + 
Sbjct: 594 ENITAMIKVPKFEEDCYLVMVTKKGIVKRTSLKEYDTARKA--GVIGILLEEDDELVGVL 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      +L  +  G   +            A G   +  +SL  G+ +  +        
Sbjct: 652 LTDGSAHILVGTRNGVAIRFVETDARPMGRAAHG---VKAISLEGGDYVVGVTV------ 702

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++  T++G  +R    DF   NR GK     +  ++   +  +    + +D L 
Sbjct: 703 PNGAGSLLLITENGYGKRVPFEDFRVQNRGGKGLTSYNINEKTGPVAGLRVVEESDDALF 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  +R P++ I V++ R + GVR + + +  +V+++    H +   +E     +  
Sbjct: 763 ISSDGVVIRVPVAEIPVYS-RYAQGVRVMRVGEETKVVTVTSAAHEEESEEESETSPEDA 821

Query: 759 SAQRRLISGDTEEITSLKNDS 779
                  + ++E+      D+
Sbjct: 822 EQPETETAENSEKPDGGSTDN 842


>gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
 gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A
 gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
          Length = 828

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   +F    ++G  +RA  + + ++   L+ V   +  D II+ +  G  +R     IR
Sbjct: 623 TEVSEFNNIRQNG--LRALKLKEGDQ---LINVLLTSGQDDIIIGTHSGYSVRFNEASIR 677

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R+  GV      +D+RVV   RIR+++ V
Sbjct: 678 NMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQ--NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + +R+       +++       V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATG---VRGVKLREDDRVVGASRIRDNQE------VLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++GV+ + L    ++++  +V   D+   E
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAE 813


>gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 853

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 551/915 (60%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ 
Sbjct: 354 DMLKYYLKHQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ R                            LSEVQ +AI+++RL  LTGL R+ +  
Sbjct: 414 ELISR--------------------------FDLSEVQAQAIVDMRLRALTGLEREKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ R  LLG+I++E+L + ++    RRT I     D+  ED I R
Sbjct: 448 EYAELMKKIEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+TV+++GY+KR+ +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ 
Sbjct: 508 ENVVITVTNMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNK 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT  +P  E E   +  Y+  ATK G
Sbjct: 568 GRVYRLKAYEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D++ + ++G  A+ L   D ++ V+      DILL TK GQC+RF    +R 
Sbjct: 625 LVKKTPIQDYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L+                                             
Sbjct: 685 -TGRVSMGVRGMNLSDN------------------------------------------- 700

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                      E    ++  + + +L VSEKG GKRTS  +F   NR GKG++   +++ 
Sbjct: 701 ----------DEIIGMQMSSQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V +  V++  +I++++ +G +IR+  ++I    R T GV + +  + E+V SV 
Sbjct: 750 -KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKEKVASVA 808

Query: 896 RIRESEIVDEAESTE 910
           ++R +    + E  E
Sbjct: 809 KVRTASAEIDGEEVE 823


>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 862

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/880 (42%), Positives = 534/880 (60%), Gaps = 60/880 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ    + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NPD+    L++II GPDFPTG  ILGR+GI +AY TGRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++T++PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR 
Sbjct: 244 RGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L+ F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLDFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  +A+ EL+Q       
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L ++I +
Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II+ EL  +K    TPRRT IV    ++ D D I  E  ++ ++  G
Sbjct: 458 LKDILARRERIEAIIEDELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++   ++D+D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+I+   E      ++++V  T++G +++  LS F 
Sbjct: 578 PSSSRTARGIPIVQMLPIPKDEKITSIVAVSEFRE---DVFLVMLTRNGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L   D++  V    +E+ I+L T+ G  + F     ++   GR + GV+
Sbjct: 635 NIRTNGLIAISLGDGDQLRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPLGRATRGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L KGD++ISM ++                        +  T  I     D  V  N 
Sbjct: 695 AMKLKKGDELISMDVLP-----------------------AQVTAGIGDAAEDEDVLENE 731

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +EE  +E   +  +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++ 
Sbjct: 732 TEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFK--SKTDCLASLH 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            VN  D++++VS++G +IR  V+ I + SRA  GV +   
Sbjct: 790 VVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRL 829


>gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565]
 gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565]
          Length = 915

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/890 (42%), Positives = 547/890 (61%), Gaps = 63/890 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V+GC+A+I+N D+ +D LM  I GPDFPTG +I GR+GI  AY TGRGSI +R  
Sbjct: 186 NLTEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T +Q+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EIKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+  L+ + W   ++  +++
Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  +L+E Q +AIL+LRL +LTGL  + I  E  SL   I
Sbjct: 426 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S +RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+SH
Sbjct: 486 AELLHILASPARLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L +GERIT I+P  E ++     YV FAT +G V++  LSD
Sbjct: 606 QLPEASRGARGRPIINLLPLEEGERITAILPVKEYDAE---KYVFFATANGTVKKTSLSD 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV--------- 715
           F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   + R          
Sbjct: 663 FSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDVE 722

Query: 716 ----------------------------FAGRNSVGVRGISLAKGDQVISMAI------V 741
                                         GR + GVRGI L  GD+V+S+ +      +
Sbjct: 723 TDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGEGAI 782

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
           L A  +   +   +     + R   G        +N   ++    E+  Q        I+
Sbjct: 783 LTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQ--------IM 834

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            ++  G   RT   +  +  R+  G+R     +   +  L  +   ++++
Sbjct: 835 LITNGGTLVRTRVAEVSVIGRNTGGVRLIRTGEDETVVGLQRIAESDEDE 884



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 108/296 (36%), Gaps = 47/296 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        E  V   +  G VK+  LS +   R    G   + +++ D +  + 
Sbjct: 629 ERITAILPVKEYDAEKYVFFATANGTVKKTSLSDF--SRPLSSGIRAINLKEGDELIGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKE---------KVWRLPIG----------------------- 609
           I      ++ FS  G V +           V                             
Sbjct: 687 ITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDVETDDDAGNDDDGSDNGEGTESKGTF 746

Query: 610 ---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               P  R  A +  + L  G+++ +++  P  E +     ++ AT++G  +R  L+++ 
Sbjct: 747 KGVRPMGRTAAGVRGIKLGAGDKVVSLI-VPRGEGA-----ILTATENGYGKRTALAEYP 800

Query: 667 QINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
             +R   G I++K+D    +++        + I+L T  G  VR  ++ + V   RN+ G
Sbjct: 801 TKSRGTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVAEVSVIG-RNTGG 859

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           VR I   + + V+ +  +  +D D ++ +     +S      +G          D 
Sbjct: 860 VRLIRTGEDETVVGLQRIAESDEDENDALAVDGEVSEGTDTATGTDAVDAGEAGDE 915


>gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/909 (38%), Positives = 517/909 (56%), Gaps = 96/909 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMD--------- 447

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L   I +  
Sbjct: 448 -----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F  +  ++   GR +
Sbjct: 668 RQGGLIAVRLMTGENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD++++M +V                                        
Sbjct: 728 AGVQGMKFREGDELLAMDVVWGD------------------------------------- 750

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +  V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 751 --------------SDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--RGSL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V ++DQI+ +   G +IR  V+E++   R T+GV      K++ ++S+ R  E +
Sbjct: 795 VGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKD 854

Query: 902 IVDEAESTE 910
             + AES E
Sbjct: 855 -DESAESGE 862



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 103/270 (38%), Gaps = 13/270 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+  L+ Y + R+GG     ++  +     D +
Sbjct: 630 ETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTGENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +   +G+ +  +    
Sbjct: 690 IGAALCNAEDDIILVSKLGMSLKFQAND-EQLRPMGRQTAGVQGMKFREGDELLAMDVVW 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K     + R  ++      +++
Sbjct: 749 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGAVIVEEDD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I+   K G+ +R  +  ++   GR + GV      K D++IS+A     D +  E    
Sbjct: 805 QIMAIMKSGKVIRSNVDEVK-RTGRTTQGVTFAKPDKNDEIISIARNEEKDDESAESGES 863

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++   +     +    E  S  ++++ E N
Sbjct: 864 VEKTESAEHGTNATVNEGASASSEAATEAN 893


>gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/897 (40%), Positives = 554/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+++  + Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--DHYLFFATRQGIVKRTNVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R    R + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNMG-RTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                                                 
Sbjct: 693 EGDHLVGATIVSDD---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +E  +L+ +  G   RT + ++    R GKGI    V+  ++ G L  +  V  +
Sbjct: 707 -----QEVLVLSENGYGK--RTPASEYPTKGRGGKGIITLKVA--DKNGPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  +  I    R+T GV +    ++ ++++   +  ++  ++ E
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAADQKEQEE 814


>gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5]
          Length = 850

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/918 (39%), Positives = 553/918 (60%), Gaps = 103/918 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MEDNIF-------DKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTT 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL E ++  V +IDN      +  ++ L+EI++GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY----KPER 351
           I DL D S R+G R+ I+L++ A+A+VILN LY++T LQ  F V M++L       +P+ 
Sbjct: 294 ITDLNDHSSREGMRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKV 353

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ ++  +E VV RRT+Y LNKA++RAH+L GL  A+ N+DEV+RIIR S N +
Sbjct: 354 LNLKEMLEYYLEHQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQ 413

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A++EL+ R                            L++VQ +AI+++RL  LTGL R+
Sbjct: 414 IAKQELIDR--------------------------FELTDVQAQAIVDMRLRALTGLERE 447

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E   L  +I++   IL+ R  LL +I++E+L++ ++    R+T I   + D+  ED
Sbjct: 448 KLEAEYAELMEKIRKFQAILADRKLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTED 507

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE+ V+ ++ LGY+KR+ +  +R+Q RGG+G  G+   ++D++ +L + +TH  ++F
Sbjct: 508 LIPRENTVIAMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTIEDDYIEELLMTTTHHYLMF 567

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ KV+ +P     ARG A+IN+L L  GE+IT ++P  + E      Y++ A
Sbjct: 568 FTNTGRVYRLKVYEIPEAGRTARGTAIINLLQLAPGEKITAVIPLRKYEE---GHYLMMA 624

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G V++  + D+  + ++G  A+ L   DE++ V+      DI+L T+ GQC+RF  +
Sbjct: 625 TKKGLVKKTPIKDYENVRKTGLTAIVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKET 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR S+GVRG++L  G                                       
Sbjct: 685 DVRS-TGRASMGVRGMNLTDG--------------------------------------- 704

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                          E    +L  +  ++L VSE G GKRT+  +F + NR GKG++   
Sbjct: 705 --------------DEVVAMQLNTQGDYLLVVSENGMGKRTAMSEFVVQNRGGKGVKCYK 750

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++  + G +V    VN+ ++I++++ +G +IR+   +I +  R T GV + +  +   V
Sbjct: 751 ITE--KTGNVVGAKAVNEENEIMMITTEGIIIRLQCADISVLGRITSGVKMINLTEGVTV 808

Query: 892 VSVERIRESEIVDEAEST 909
            S+ ++R+ +   EA++T
Sbjct: 809 ASIAKVRDKDP--EADTT 824


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/909 (40%), Positives = 562/909 (61%), Gaps = 91/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIEVE-NNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR
Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV   R + GV+G+
Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVMG-RTASGVKGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L +   D+V+ M  +   + +                                      
Sbjct: 695 TLDEDNTDEVVGMICIKDKEKE-------------------------------------- 716

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 717 -------------TVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESE 901
            V D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++    E E
Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821

Query: 902 IVDEAESTE 910
           I ++    E
Sbjct: 822 IAEQKAEQE 830



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 118/278 (42%), Gaps = 15/278 (5%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +  +  +   +    ++  +  G +K+  L  Y   R+   G + + +R++D +  + + 
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQ--NGVNAITLREDDGLIQVCMT 658

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           + +  V+  +  G   +     + +    A G   + +   N  E +  ++   + E   
Sbjct: 659 NGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDE-VVGMICIKDKEKE- 716

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTT 700
               V+  ++ G  +R+ + D+   NR GK        +   ++++++  T END+++  
Sbjct: 717 ---TVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIIN 773

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMS 759
           K G  +R  ++ + V   R + GVR I+L K  D++ S+  VL   ++ +E I   K   
Sbjct: 774 KSGIAIRMKVADLNVIG-RATQGVRLINLEKRNDEIASVCKVL---SESEEEIAEQKAEQ 829

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             R+   G           + V+   SEE  ++   +E
Sbjct: 830 EARQENEGREFSENQASLGTDVDLPESEEDNEQNDNEE 867


>gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 871

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/915 (39%), Positives = 544/915 (59%), Gaps = 90/915 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSV
Sbjct: 57  LGLGNTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNL EV+DGC A IDNP+ID + LM  I+ PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  + IE +    ++IV++EIPY VNKA ++E IA+LV+E R+  I++  
Sbjct: 237 YETGRGRIVLRAKAEIE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+V+++KR A+A+V+LN+L++ T LQS FSVN +AL   +P   TL   +K 
Sbjct: 296 DESGRQGMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTK+ L KA++RAH+L GL IA  N+DEVV+IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  + +  E   L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYQEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL        ++K EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 EELIARLQLILDDPEECKRVMKAELEEVKEKFGDERRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KR PLS +  Q RGG G  G   RD+DF   ++  + H ++LFF+  G  + 
Sbjct: 510 TVSHLGYIKRTPLSEFHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L+++  + +   +      D     N ++VFATK+G V+
Sbjct: 570 LKCYEIPEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ +   DE++ V     +N +++  + G+ V F  + +R    
Sbjct: 630 KTSLEAYSRPRTNGVNAITIAEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTMG- 688

Query: 719 RNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG+ L  GD  V+ M +V + + +                              
Sbjct: 689 RTATGVRGMRLDGGDDAVVGMIVVNNPETE------------------------------ 718

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE G+GKR+   D+R +NR GKG++  +++  ++
Sbjct: 719 ---------------------TVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNIT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D++ +++++  G  IR+ V   R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGKLVAIKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCK 815

Query: 897 IRESEIVDE-AESTE 910
           ++ S+  D+  E+ E
Sbjct: 816 VKTSDKEDDLNENDE 830



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 113/258 (43%), Gaps = 13/258 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            ++   +V  +  G VK+  L  Y   R    G + + + + D V D+ + +    ++  
Sbjct: 613 FIKNHFIVFATKNGTVKKTSLEAYSRPR--TNGVNAITIAEGDEVVDVRLTNGKNQLIMA 670

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G         +      A G  +  +      + +  ++     E+      V+  +
Sbjct: 671 NRNGRAVYFDENTVRTMGRTATG--VRGMRLDGGDDAVVGMIVVNNPETE----TVMVVS 724

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ +SD+ Q NR GK    L+  D+   +++++  T +ND+++  K G  +R  
Sbjct: 725 ETGYGKRSIVSDYRQTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIAIRLA 784

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++  RV   R + GVR I+L+K + VI+ ++     +D ++ +            ++   
Sbjct: 785 VANFRVMG-RATQGVRLINLSKKNDVIA-SVCKVKTSDKEDDLNENDEEHPNNEAMNTAE 842

Query: 770 EEITSLKNDSSVEGNISE 787
           +   +  ND+ ++GN ++
Sbjct: 843 QGTANANNDAQIQGNDAD 860


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/909 (40%), Positives = 562/909 (61%), Gaps = 91/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIEVE-NNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR
Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV   R + GV+G+
Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVMG-RTASGVKGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L +   D+V+ M  +   + +                                      
Sbjct: 695 TLDEDNTDEVVGMICIKDKEKE-------------------------------------- 716

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 717 -------------TVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESE 901
            V D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++    E E
Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821

Query: 902 IVDEAESTE 910
           I ++    E
Sbjct: 822 IAEQKAEQE 830



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 118/278 (42%), Gaps = 15/278 (5%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +  +  +   +    ++  +  G +K+  L  Y   R+   G + + +R++D +  + + 
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQ--NGVNAITLREDDGLIQVCMT 658

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           + +  V+  +  G   +     + +    A G   + +   N  E +  ++   + E   
Sbjct: 659 NGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDE-VVGMICIKDKEKE- 716

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTT 700
               V+  ++ G  +R+ + D+   NR GK        +   ++++++  T END+++  
Sbjct: 717 ---TVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIIN 773

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMS 759
           K G  +R  ++ + V   R + GVR I+L K  D++ S+  VL   ++ +E I   K   
Sbjct: 774 KSGIAIRMKVADLNVIG-RATQGVRLINLEKRNDEIASVCKVL---SESEEEIAEQKAEQ 829

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             R+   G           + V+   SEE  ++   +E
Sbjct: 830 EARQENEGRELSENQASLGTDVDLPESEEDNEQNDNEE 867


>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
 gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
          Length = 929

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/875 (42%), Positives = 537/875 (61%), Gaps = 85/875 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  NK + K A   GEV+G
Sbjct: 91  EMEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVIG 150

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YDA+ R+AQ +S+R  L++G GNFG++DGD  AA RYTE RL + A  LL
Sbjct: 151 KYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMELL 210

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDT+D++ NYD S QEPVVL AR+PN+LVNG  GIAVGMATNIP HNL E +    
Sbjct: 211 RDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAVC 270

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +IDNPD  +D LM ++ GPDFPTGAVI+G  GI+ AY TGRG I IR  +H+E T   R
Sbjct: 271 MLIDNPDATVDDLMTVMPGPDFPTGAVIMGSEGIRQAYETGRGIITIRAKAHVESTKTGR 330

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TE PY VNK  + EKIA+LV EKR+  I+D+RDES+R+G R+VIELK+GA  +V+
Sbjct: 331 NKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAIPEVV 390

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+Y++LQS F +  +AL    P   TL  +L+ ++  + +VV RRT++ L KAR R
Sbjct: 391 LNNLYKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKARAR 450

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL +A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 451 AHILEGLLLALDHIDEVISIIRSSRTDTQASERLIER----------------------- 487

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 ++ QT AILE+RL RLTGL RD I+ EL+ L   I+   D+L+   ++L +IK 
Sbjct: 488 ---FGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVIKS 544

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  + ++    RRT I +  + ++ ED I  EDMVVTV+H GYVKR+P++ YR+Q+RGG
Sbjct: 545 EMSEIGEKYGDKRRTTISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGG 604

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG  G+ ++D DFV DLF+ STH  V+FF++ G VY+ KV  LPIGS  ARG AL+N+L 
Sbjct: 605 KGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLP 664

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L +GE  T ++   E      + Y++FAT +G V++  +SD+ +  R G IA+ L   DE
Sbjct: 665 LGEGEHPTAVITTRE---FPADEYLMFATANGMVKKTAMSDYDKSRRDGIIAINLKRDDE 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V        ++L +++G+ + F  S +R   GR++ GVRGI+L    +++ M     
Sbjct: 722 LVNVRRVKPGQKVILCSEVGKAILFDESEVRP-TGRDTSGVRGITLKDDVKMLGM----- 775

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                           E+      +L +
Sbjct: 776 ------------------------------------------------EITNGNGDLLVM 787

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E+G+GKRT  +++    R G+G+    ++  ++ G LVA   V    ++++VS++G +I
Sbjct: 788 TERGYGKRTPVFEYPEHKRGGQGVATIAMT--SKKGNLVACRVVGPQHELMIVSEEGVVI 845

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           RV   +I    RAT+GV I +  ++++V +V R+ 
Sbjct: 846 RVKTADISKLGRATQGVKIMNMGENDKVSAVARMV 880



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 99/264 (37%), Gaps = 17/264 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E    +        ++ ++  +  G VK+  +S Y   RR   G   + ++ +D + ++ 
Sbjct: 669 EHPTAVITTREFPADEYLMFATANGMVKKTAMSDYDKSRR--DGIIAINLKRDDELVNVR 726

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V     V+  S +G         +        G   +  ++L    ++  +      E 
Sbjct: 727 RVKPGQKVILCSEVGKAILFDESEVRPTGRDTSG---VRGITLKDDVKMLGM------EI 777

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG----KIAMKLDSRDEILSVETCTQENDIL 697
           +  N  ++  T+ G  +R  + ++ +  R G     IAM       +++      +++++
Sbjct: 778 TNGNGDLLVMTERGYGKRTPVFEYPEHKRGGQGVATIAMTSKKG-NLVACRVVGPQHELM 836

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + ++ G  +R   + I     R + GV+ +++ + D+V ++A ++       +     + 
Sbjct: 837 IVSEEGVVIRVKTADISKLG-RATQGVKIMNMGENDKVSAVARMVAHKKKAAKANPMQRS 895

Query: 758 MSAQRRLISGDTEEITSLKNDSSV 781
           +          ++E      D   
Sbjct: 896 LDLSAAGARDASDEDPVDIGDEEE 919


>gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 859

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/900 (45%), Positives = 605/900 (67%), Gaps = 43/900 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D      I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MQKTEIPKDN----NIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+
Sbjct: 57  YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K + +L+DD+ K+T+ F+ NYD + +EP VL A+YPN+LVNG G
Sbjct: 117 DGDPAAAMRYTETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGE+++G +A+IDN DI +  LM+ + GPDFPTG VI+G+  IK+ 
Sbjct: 177 GIAVGMATSIPPHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IRG   +E     RE++V+T IPYQVNK+ + E+IA+LVREK+I  I D+R
Sbjct: 237 YNNGRGSFKIRGEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RV I+L+ G   + I  QLY+ T ++S F  N +A+   KP+  TL   L  
Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSN 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F++FRE++V+++TK+ L KA +RAH+L+GL+++V NLD++++IIR S  PE A++ +++ 
Sbjct: 357 FLSFREDIVIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKT 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  +  + LI L++         G   LSE Q  AILELRL +LT LG ++I  E+  L
Sbjct: 417 KWKINKSQKLISLVE----GKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     I+SS+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I ++ +++
Sbjct: 473 AELIARYKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVII 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  L   + Q+RGGKG+SG+  RD+D V     V+THTSVLFFS+ G VYK
Sbjct: 533 TVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYK 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K W++P GS  ++GK+L NIL L   + I++IMP PE+E+   N  ++FAT  G VR+N
Sbjct: 593 VKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKN 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF  IN SGKIAMKLD+ D+I+ V+ C  + DI+L+TK G+C+RF    +RVF GR+
Sbjct: 653 SLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRS 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G++GI LA  DQ++S++++                                   + + 
Sbjct: 713 SKGIKGIELAPNDQIVSLSVI---------------------------------DNDKTK 739

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G  S++   E+K KE+F+L++SE G+GK+TS  D+R++NR GKGI     S  N  G 
Sbjct: 740 KNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRN--GN 797

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + + FPV + D+I++ ++KG +IRV V EIR A R T+GV I   + +E+VVS  +I ++
Sbjct: 798 ITSSFPVFEGDEILISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKIDDN 857



 Score = 41.4 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 58/231 (25%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   +  + +  +    A Y + I   K +         + +E  ++   + +   +   
Sbjct: 460 LGINEIEVEIKKLAELIARYKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNY 519

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV---- 844
             +E   K+  I+TV+ +G+ KR S    +   R GKG         + +   ++V    
Sbjct: 520 DIEETIQKQSVIITVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHT 579

Query: 845 ------------------------------------------------FPVNDND----Q 852
                                                            P N+ D    Q
Sbjct: 580 SVLFFSTEGLVYKVKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQ 639

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           II  + +G + +  + +         G +      ++++V V+  ++ + +
Sbjct: 640 IIFATAQGKVRKNSLEDFSSI--NASGKIAMKLDNNDKIVGVKICQDDQDI 688


>gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23]
 gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23]
          Length = 843

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/894 (40%), Positives = 538/894 (60%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM +     + Y
Sbjct: 6   DNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 66  KKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL K+TVD  PN+D S +EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 126 ECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATNMP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+DGC A IDNPDID + LM+ I GPDFPTGA I G  G+K+AY TGRG IV+R
Sbjct: 186 THNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIYGLQGVKDAYETGRGRIVMR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA ++  IA+L  + +I  +A++ DES RQG R+V
Sbjct: 246 AKAEIESGDT-HDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGMRIV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           ++ KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +R
Sbjct: 305 VDCKRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA++RAH+L GL IAV N+DEVV IIR S  P  A+R L  R           
Sbjct: 365 RTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEAR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RLA+LTGL  D +  E + L   I E  +IL
Sbjct: 414 ---------------FELDELQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +  R   ++K +L  VK++    RRT I+    +   ED    + +V+T+SH+GY+KR 
Sbjct: 459 DNPERCKEVMKADLQEVKEKYGDERRTEIIPFDHEFNAEDFYPDDPVVITISHMGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +  Q RGG G      RD DF   ++  + H ++LFF+  G  Y +K + +P G  
Sbjct: 519 PLSEFHEQGRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDK 578

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   + I  ++      D    N+ YVVFATK G +++  L  + +  
Sbjct: 579 NSKGRAIQNMLNIEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPR 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ ++  D+++ V      N++LL  + G+ VRF  + +RV   R S GV G+ L
Sbjct: 639 ANGVIAININEGDQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVMG-RVSTGVIGMRL 697

Query: 730 AKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             GD +V+ M  V   + +                                         
Sbjct: 698 DGGDDEVVGMVCVNDPNTE----------------------------------------- 716

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      I+ VSE G+GKR+   D+R ++R  KG++   +++  + G LVA+  V 
Sbjct: 717 ----------TIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITE--KTGRLVAIKVVT 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           D + +++++  G LIR+ V ++R+  RAT+GV + +   K++ + SV ++  S+
Sbjct: 765 DENDLMIINKSGVLIRLKVADVRVMGRATQGVRLINLTKKNDSIASVCKVMHSQ 818


>gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 857

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/891 (39%), Positives = 531/891 (59%), Gaps = 83/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++     ++I  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++   +N+
Sbjct: 3   EAQDGQHPQINIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++A+YDAL R+AQ++S+R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A   L DL K+TVDFRPNYD + QEP V+  + PN+L+NG  GIAVGMATN
Sbjct: 123 YTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+ D    ++DNP   +D LME ++GPDFPT   +    G+ +AY TGRG++ 
Sbjct: 183 IPPHNLGELCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGKGLYDAYHTGRGTVK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+     + +V+ EIP+ +NK++++EKIA LV +++I  IADLRDESDR+G R
Sbjct: 243 MRGRVEIEERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKRG   D+++N LY++T L+S F +NM+A+   +P   TL   L  FV  R EVV
Sbjct: 303 IVIDLKRGVIPDIVVNALYKFTPLESSFGINMLAVVDNRPVLLTLKSALSCFVDHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT+Y L KA  RAH+L GL IA+ ++D+VV +IR S NPE AR+ LM           
Sbjct: 363 IRRTRYDLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMA---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q RAIL++RL RLTGL R+++  E   L  +I+    
Sbjct: 413 ----------------TFELSEIQARAILDMRLQRLTGLQREELLAEYKDLLQKIEFYKS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L +   L   +K+E+  +++   TPRRT  + E L  ++ ED I  +++V+T+S  GY+
Sbjct: 457 VLDNSEVLRSEMKREIREIRETFVTPRRTEVLTEALGGIDIEDLIPDDEVVITLSRRGYM 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+ Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P 
Sbjct: 517 KRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  A+G  + N+L L +GE +TT++   E      + Y +F T+ G V+R+  S + + 
Sbjct: 577 GSRTAKGVHINNLLPLEEGEWVTTVLALREFAE---DKYFLFVTRRGMVKRSSASLYARC 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G +A+ L   DE++ V    ++N I+L T  G  +RF    IR    R + GV+GI+
Sbjct: 634 RKTGLMAVGLREDDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPMG-RVATGVKGIA 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V++  ++   D   +                                       
Sbjct: 693 LRRQDSVVAGVVLKDVDQTTE--------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      I+++S  G+GKRT    +R+ +R GKGI    V+   + G +V   PV 
Sbjct: 714 -----------IMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTA--KTGPVVGAMPVR 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           DND +IL++    ++R+ V+E+R   RAT GV++    +  RVV  +R+ E
Sbjct: 761 DNDGLILLTSANKIVRIGVDEVRSKGRATMGVMLVRLDEGARVVGFDRVDE 811



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 96/265 (36%), Gaps = 55/265 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTT 700
            ++  V+  ++ G ++R  L ++ Q  R GK    L     D +    T T    + L T
Sbjct: 502 PDDEVVITLSRRGYMKRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFT 561

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+  +  +        R + GV   +L   ++   +  VL                  
Sbjct: 562 NKGRMHQLKV-HQVPEGSRTAKGVHINNLLPLEEGEWVTTVL------------------ 602

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                              ++++ L V+ +G  KR+S+  +   
Sbjct: 603 -----------------------------ALREFAEDKYFLFVTRRGMVKRSSASLYARC 633

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            ++G  + A  + + +E   LV V P+ +++ I+L +  G  IR    +IR   R   GV
Sbjct: 634 RKTG--LMAVGLREDDE---LVVVRPIREDNHIVLATADGFAIRFSCGDIRPMGRVATGV 688

Query: 881 VIFSTAKDERVVSVERIRESEIVDE 905
              +  + + VV+   +++ +   E
Sbjct: 689 KGIALRRQDSVVAGVVLKDVDQTTE 713



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 101/271 (37%), Gaps = 13/271 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +   + V+  G VKR   S+Y   R+   G   V +R++D +  + 
Sbjct: 596 EWVTTVLALREFAEDKYFLFVTRRGMVKRSSASLYARCRKT--GLMAVGLREDDELVVVR 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            +     ++  ++ GF  +     +      A G   +  ++L + + +   +   + + 
Sbjct: 654 PIREDNHIVLATADGFAIRFSCGDIRPMGRVATG---VKGIALRRQDSVVAGVVLKDVDQ 710

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
           +     ++  + +G  +R ++  +   +R GK  +      +   ++        + ++L
Sbjct: 711 TTE---IMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTAKTGPVVGAMPVRDNDGLIL 767

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T   + VR  +  +R    R ++GV  + L +G +V+    V        +    +   
Sbjct: 768 LTSANKIVRIGVDEVRSKG-RATMGVMLVRLDEGARVVGFDRVDEGGQIVRDLSVELDEA 826

Query: 759 SAQRRLIS-GDTEEITSLKNDSSVEGNISEE 788
                + S  D+ +    K D     +  E+
Sbjct: 827 DGMPSVASASDSADGRGSKPDPEPNQDGDED 857


>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 838

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/871 (42%), Positives = 529/871 (60%), Gaps = 54/871 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRLQ      LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HNLGE+VDG VA+I NP+I 
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT----SGDREQIVV 268
              LM+ I  PDFPTG  ILGR+GIK+AY TGRGSI +RGV+ +E        D+E I+V
Sbjct: 181 EKELMQYIPAPDFPTGGQILGRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAIIV 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAE+V +KRI  I+D+RDESDR+G RVVIELKR A   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQS F  NM+AL G +P+  T+   L+ F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQSNFGANMLALVGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+ NLD V+ +IR + +  TA+ +L+++                            
Sbjct: 361 GLLIALDNLDAVIAVIRAANDTATAKSQLIEQ--------------------------FG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE Q  AIL+++L RLT L    I+ E   L + I +  DIL++RSR+L II+ E L +
Sbjct: 395 LSEPQADAILQMQLRRLTALEAQKIQAEHEELQVRIADLQDILANRSRILEIIETEALQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K   DTPRRT I E   +++D D I  E  V+ V+  GY+KR+P+  + AQ R  +G++ 
Sbjct: 455 KTTHDTPRRTAIQEVEGELDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAA 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             M+++D V        H S+LFFS  G VY  + +++P  S  ARG  ++ +L +   E
Sbjct: 515 ARMKEDDGVEHFLTCCDHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+++P  E     +++Y+V  T+ G +++  L  F  I  +G IA+ L   D++  V 
Sbjct: 575 KITSVVPVSE---FTDDVYLVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
            C  E+ I++ +  G  + F     ++   GR + GV+ + L   D++ISM I+      
Sbjct: 632 LCRAEDSIIIGSSQGMAIHFKADHDQLRPLGRATRGVKAMKLRSKDELISMDILP----- 686

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                          RLI+    E    ++D+S E  ++ E   E   +  ++L V+  G
Sbjct: 687 ----------AQVVERLIATANSEEVETEDDTSDE--VNGEEVHETAGQGPWVLVVTTGG 734

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
            GKR     FR+ NR+G G+        ++   L A+  VN+ D++++V+ +G +IR  +
Sbjct: 735 LGKRVPVSQFRLQNRAGMGLVTIKF--RHKKDKLAALRVVNEGDELMMVTMRGIIIRQAL 792

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + I   SR   G+ +    +++ + +V  + 
Sbjct: 793 DAISPQSRMATGIRVQRLDEEDAIAAVALVP 823


>gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
 gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
          Length = 856

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +KRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIEIGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KAR+RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    NN YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   + +                                        
Sbjct: 695 DNDGQDEVVGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 853

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 551/915 (60%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ 
Sbjct: 354 DMLKYYLKHQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ R                            LSEVQ +AI+++RL  LTGL R+ +  
Sbjct: 414 ELISR--------------------------FDLSEVQAQAIVDMRLRALTGLEREKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ R  LLG+I++E+L + ++    RRT I     D+  ED I R
Sbjct: 448 EYAELMKKIEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+TV+++GY+KR+ +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ 
Sbjct: 508 ENVVITVTNMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNK 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT  +P  E E   +  Y+  ATK G
Sbjct: 568 GRVYRLKAYEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D++ + ++G  A+ L   D ++ V+      DILL TK GQC+RF    +R 
Sbjct: 625 LVKKTPIQDYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L+                                             
Sbjct: 685 -TGRVSMGVRGMNLSDN------------------------------------------- 700

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                      E    ++  + + +L VSEKG GKRTS  +F   NR GKG++   +++ 
Sbjct: 701 ----------DEIIGMQMSSQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V +  V++  +I++++ +G +IR+  ++I    R T GV + +  + ERV SV 
Sbjct: 750 -KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVA 808

Query: 896 RIRESEIVDEAESTE 910
           ++R +    + E  E
Sbjct: 809 KVRTASAEIDGEEVE 823


>gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614]
 gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614]
          Length = 922

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/925 (38%), Positives = 516/925 (55%), Gaps = 68/925 (7%)

Query: 1   MTEHIISSDE-------EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MTE                   I  V +   MQ +Y+ YA+ VI+GRA+PD+RDGLKPVH
Sbjct: 1   MTETPTDGGSTPPSDGGGPGGRIEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G   ++ + KC+R+ G+VMG+YHPHG+ AIYD L R+AQ W +R  LI G
Sbjct: 61  RRVLYAMYDGGYRPDRGFSKCSRVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   D  AA RYTECR+   A  ++ D+ +DTVDF+PNYDG  QEPVVL AR+PN
Sbjct: 121 QGNFGSPGNDSAAAMRYTECRMAPLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV +G    +++PD   +     L+E I+GPDFP GA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAEGARWALEHPDATREELQDALIERIKGPDFPNGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +I+GR GI+ AY TGRGSI  R V  +++ +  R  +V+TE+PY VN   +  KIAEL  
Sbjct: 241 LIVGRQGIEQAYRTGRGSITQRAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELAD 300

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
             ++  I+D+RD+ SDR G R+V+ LKR A A V+LN L ++T LQ+ FS NM+AL    
Sbjct: 301 SGKVQGISDVRDDTSDRTGQRLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGV 360

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P    +   +  +V  + +V+ RRT+Y L +A  RAHVL GL  A+  LDEV+ +IR SP
Sbjct: 361 PRTLAIDQFISNWVTHQIDVIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSP 420

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           +   AR  L+                            + + EVQ  AIL+++L +L  L
Sbjct: 421 DVAEAREGLIA--------------------------LLDIDEVQATAILDMQLRQLAAL 454

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I ++L  +   I +  DIL++ +R   I+  EL  + +     RR++I+    D+ 
Sbjct: 455 QRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYGDDRRSQIIAADGDLS 514

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  E++VV+++  GY KR     YR QRRGGKG  G  +R +D V      + H  
Sbjct: 515 MEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKGVRGATLRGDDVVEHFIATTNHHW 574

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP  S  A+G  +  +LS    E I  ++   + + +    Y+
Sbjct: 575 LLFFTTAGRVYRTKAYNLPEASRDAKGGHVAGLLSFQPDENIAQVLAIRDYDQA---PYL 631

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
           V AT+ G V++ +L D+    ++G IA+      DE++  E    E+ ILL ++ GQ VR
Sbjct: 632 VLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGAELVNPEDHILLVSRKGQSVR 691

Query: 708 FPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+    GD ++SM+++                     R   
Sbjct: 692 FQADDSQLRPMGRATGGVTGMKFRDGDSLLSMSVI---------------------RAAQ 730

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            + EE      +S  E  ++E R Q   L  Q++ T+++ GF KRT   ++R+ +R G G
Sbjct: 731 VEAEEAAEASGESVEE--MAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIG 788

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE-IRIASRATKGVVIFST 885
           IRA  ++  +  G LV  F V D D+I+ ++  G ++R P++E  R   R+T GV   + 
Sbjct: 789 IRAMKLANEDR-GELVGAFIVEDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVTP 847

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
            K + V  V R  E+   DE +  +
Sbjct: 848 KKGDSVAVVARSVEANGDDELDELD 872



 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 118/304 (38%), Gaps = 29/304 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       +   +V  +  G VK+  L  Y + R+ G   +     ++D +    
Sbjct: 614 ENIAQVLAIRDYDQAPYLVLATRDGLVKKTRLGDYNSPRQAGV-IAINFRSEDDELIGAE 672

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRL---PIGSPQA--------RGKALINI--------- 621
           +V+    +L  S  G   + +       P+G             G +L+++         
Sbjct: 673 LVNPEDHILLVSRKGQSVRFQADDSQLRPMGRATGGVTGMKFRDGDSLLSMSVIRAAQVE 732

Query: 622 ---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAM 676
               +   GE +  +          +  YV   T  G  +R ++ ++   +R G    AM
Sbjct: 733 AEEAAEASGESVEEMAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAM 792

Query: 677 KLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           KL + D  E++        ++IL  T  GQ VR PI       GR+++GV+ ++  KGD 
Sbjct: 793 KLANEDRGELVGAFIVEDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVTPKKGDS 852

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +A  + A+ D DE     +    +     G+ +E      D++++G+ + +  +   
Sbjct: 853 VAVVARSVEANGD-DELDELDESALDEGGAEGGEVDESADAGTDATIDGSAASDVARTEG 911

Query: 795 LKEQ 798
             E 
Sbjct: 912 DTEP 915


>gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 832

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/901 (40%), Positives = 547/901 (60%), Gaps = 86/901 (9%)

Query: 1   MTEHIISSD--EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   + +  E     I  ++I +EM+N YL YA++VI+GRA+PD+RDGLKPVHRR L+
Sbjct: 1   MSDENNTPENGEINHGNIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +    NK ++K AR+ G+V+GKYHPHG++A+Y+ L RMAQD+S+R +L++GQGNFG
Sbjct: 61  AMYSLNNYHNKPFLKSARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA RYTE R++K +  +L DL KDTVD++PNYD S +EP VL  + PN+LVNG
Sbjct: 121 SIDGDAAAAMRYTEIRMKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL E++     +IDN D+ ++ LM+ I GPDFPT   I G  GIK
Sbjct: 181 SSGIAVGMATNIPPHNLTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSIHGTEGIK 240

Query: 239 NAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +AY TGRG I IR    IE     +RE+IV+TE+PYQVNKA ++EKIA+LV  K I  I+
Sbjct: 241 SAYHTGRGIIQIRAKVDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDES R+G RVVI+LK+G  A VI+N+LY+ T LQ  F +  ++++   P+   L  +
Sbjct: 301 DIRDESSREGIRVVIDLKKGEIASVIVNRLYKATQLQVSFGIIFLSISNGSPKVMNLKEM 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+  R EVV+RRT + L KA++RAH+L GL +AV N+DEVV I++ S  P  A+ +L
Sbjct: 361 LECFIDHRREVVIRRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKL 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            LSE+Q++AIL++RL RLTGL RD I  + 
Sbjct: 421 ISR--------------------------FSLSEIQSQAILDMRLQRLTGLERDKIIADY 454

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            ++  EI    +IL S   + GIIK E   + +     RRT IV    +++ ED +  ED
Sbjct: 455 EAIMKEIARLEEILGSEDLIRGIIKTEFQEINENYGDERRTAIVAKADEIQIEDLVKNED 514

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++VT++H GY+KR+ +  YR Q+RGGKG  G    DEDF TD+F  +TH+++LFF++ G 
Sbjct: 515 VLVTITHKGYIKRMTMDTYRTQKRGGKGVKGASNADEDFFTDIFTANTHSTILFFTNRGS 574

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V+ +KV+ +P G+  A+G+ + N++ +  G++I  IM  P  E      Y++FAT+ G V
Sbjct: 575 VFSKKVYNIPEGTRTAKGRNIANLIPVPPGDKIKEIMCIPP-EDEREGKYLMFATEKGLV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +++ L+D+  I +SG  A+K+   D + SV       D+LL +  G+ +RF  S  R   
Sbjct: 634 KKSALTDYNNIKQSGLRAIKVQDGDSVCSVRVSDGTKDVLLCSTSGKIIRFDESDARPMG 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R S GV+GI++   +++I M ++  +                                 
Sbjct: 694 -RVSQGVKGINIDDDERIIGMELIDDS--------------------------------- 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 IL+++E G+GKRT++  +R   R GKGI A  ++  ++
Sbjct: 720 --------------------VEILSITENGYGKRTAASQYRKQTRGGKGILAMRLT--DK 757

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +  + PV+D D +++++DKG ++R  ++ I +  RAT+GV I    + E VVSVE+I
Sbjct: 758 NGEIKQIKPVSDKDDLMVITDKGQVVRTKISGISLMGRATQGVRIIKLKEGESVVSVEKI 817

Query: 898 R 898
            
Sbjct: 818 V 818


>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
 gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
 gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 860

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/910 (41%), Positives = 544/910 (59%), Gaps = 61/910 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    + +  + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++
Sbjct: 2   TDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMR 121

Query: 130 YTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+    + LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMAT
Sbjct: 122 YTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+I NP+I    LM+II GPDFPTGA ILGR+GI+ AY TGRGSI
Sbjct: 182 NIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSI 241

Query: 249 VIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +RGV+ IE        DR+ I+VTE+PYQ NKAA++E+IA+LV +K+I  IAD+RDESD
Sbjct: 242 TMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESD 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VIELKR A A V+LN LY+ T +QS F  N++AL    PE  T+   L  F  F
Sbjct: 302 RDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEF 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E + RRT+Y L KA +R H+L GL IA+ NLD V+R+IR + +  +A+ EL++     
Sbjct: 362 RIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVE----- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSEVQ  AIL+++L RLT L  D I  E + L  +I
Sbjct: 417 ---------------------GFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+ R R+  II++EL  +K    TPRRT IV+   ++ D D I  +  ++ ++ 
Sbjct: 456 ADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIANDQALILLTE 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S +  Q R  +G++   ++D+D V        H  VLFFS  G VY    +
Sbjct: 516 QGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAY 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++PI S  ARG  ++ +L + + E+IT+++   E +   ++ Y +  TK G +++  LS 
Sbjct: 576 QIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFD---DDTYFIMLTKQGYIKKTALSA 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723
           F  I  +G IA+ L   D++  V     E+ +++ ++ G  + F      + A GR + G
Sbjct: 633 FSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRG 692

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L  GD +ISM I+                       +  + E    L  D     
Sbjct: 693 VKSMRLRSGDALISMDILPSQ--------------VVANIAVGSEDEPDEDLGGD----- 733

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             ++   +E      ++L V+ KGFGKR     FR+ +R+G G++A      ++   LVA
Sbjct: 734 --TDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDD--QLVA 789

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ES 900
           +  VN +D++++V+++G +IR  VN+I   SR+  GV +     D+ + +V  +    E 
Sbjct: 790 LHVVNADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALVPPSGEE 849

Query: 901 EIVDEAESTE 910
           E+ + +ES E
Sbjct: 850 ELAEMSESEE 859


>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 842

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/891 (41%), Positives = 540/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEANIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +G                                                      E 
Sbjct: 693 LREG-----------------------------------------------------DEV 699

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E+    + +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V 
Sbjct: 700 IGMEVLEDNEKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + ++L++  G LIR  ++ +    R+  GV +    ++E+V +V ++ +
Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKVPK 808



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 106/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 593 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 650

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L +G+ +  +    +
Sbjct: 651 SVQMTDGSKNMIIATKHGQSIYFPEANIRVMGRTAAG---VRGIRLREGDEVIGMEVLED 707

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           +E       V+  T+ G  ++   + +   NR G   K     +    +++++T T E D
Sbjct: 708 NEK------VLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 761

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 762 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDENEKVATVAKVPKEEDEVELEEEID 820

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 821 ETLITQVPDESFEDAPGSDIEE 842


>gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
 gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
          Length = 859

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/912 (39%), Positives = 554/912 (60%), Gaps = 69/912 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++   + +  +++ +EM  S+L Y+++VI+ RA+PD RDGLKP  RRIL  M  +GV  
Sbjct: 2   PNQNPNEKVQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+K++KCA+I G+ MG YHPHG+ AIY  L  MAQ W++R +L++GQGNFGSV+GDPPA+
Sbjct: 62  NRKHIKCAKIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPAS 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL+     L+DD+ K+TVDF P YD    EPVVL A +PN+LVNGG GIAVGMA
Sbjct: 122 MRYTEARLRWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E ++G  A IDNP+I LD LM+ ++GPDFPTG ++ G  GI++ + TGRGS
Sbjct: 182 TNIPPHNLSECINGICAQIDNPNITLDELMQYVKGPDFPTGCILQGSAGIRSYFETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +RG +  E+  G REQI+VTEIPY VN+A ++++IAEL  EK +  I+D+RDESD   
Sbjct: 242 VRVRGRASFEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESDENT 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             VVI+LKR  +  VILN L+++T+L+S FSVNM+A++  +P    L   +  ++  R E
Sbjct: 302 R-VVIDLKRDGNPKVILNNLFKHTALESSFSVNMLAIDHGRPRLLGLKDAIACYIEHRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +++RRT++LLN A   A  L G  IA+ANLD+ +RIIR S + + A+ +LM  SW  + +
Sbjct: 361 IILRRTRFLLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARAAV 420

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           + L  LI   +  +   G    +E Q   IL+LRL +LTGL R+ I++E + L + I++ 
Sbjct: 421 EQLGVLIRSEARVVD--GQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDL 478

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +DIL+   R+L IIK EL +++D+  + RRT IV    ++  ED I  E ++VT++H G+
Sbjct: 479 MDILAKEHRVLTIIKDELRAIQDKYGSERRTEIVPEQGEIAIEDLIANEGVIVTLTHNGF 538

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +KR  +S YRAQRRGGKG  G+  R+       DFV  LF  +TH  ++FF+  G  Y E
Sbjct: 539 IKRTAVSAYRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFTVEGRCYVE 598

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDESSWNNLYVVFATKHGNV 657
           +V+ +P G+  ++G+++ N+L L Q E+I   +       E+E+  + L++VFAT+ G V
Sbjct: 599 RVFEIPEGTRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIVFATRSGIV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +++ L++F  I + G IA+++++ D ++  +  T  ++I+L T  G  +RF    +R   
Sbjct: 659 KKSNLNEFKNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFNEGELR-DQ 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN+VGV GI     D V++ A+V                                    
Sbjct: 718 GRNTVGVWGIRPDTKDYVVAAALV------------------------------------ 741

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                             KE  +L   E G GKRT   ++RI +R GKGI     +  ++
Sbjct: 742 -----------------NKEAMLLVAGENGIGKRTGFDEYRIQSRGGKGIITMKTT--DK 782

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G++     V + D+++L+++KG ++R  V EIR   R  +GV +    ++E +  +  +
Sbjct: 783 TGSVAGALTVVETDELMLITNKGKMVRTRVAEIRETGRNAQGVKLIDLRENEILQGIAPV 842

Query: 898 RESEIVDEAEST 909
             +E  ++AE  
Sbjct: 843 VSNEDEEKAEGE 854


>gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
 gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
          Length = 853

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 551/915 (60%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSSREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ 
Sbjct: 354 DMLKYYLKHQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ R                            LSEVQ +AI+++RL  LTGL R+ +  
Sbjct: 414 ELISR--------------------------FDLSEVQAQAIVDMRLRALTGLEREKLEA 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ R  LLG+I++E+L + ++    RRT I     D+  ED I R
Sbjct: 448 EYAELMKKIEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+TV+++GY+KR+ +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ 
Sbjct: 508 ENVVITVTNMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNK 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     ARG A+IN+L L   E+IT  +P  E E   +  Y+  ATK G
Sbjct: 568 GRVYRLKAYEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D++ + ++G  A+ L   D ++ V+      DILL TK GQC+RF    +R 
Sbjct: 625 LVKKTPIQDYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L+                                             
Sbjct: 685 -TGRVSMGVRGMNLSDN------------------------------------------- 700

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                      E    ++  + + +L VSEKG GKRTS  +F   NR GKG++   +++ 
Sbjct: 701 ----------DEIIGMQMSSQGKDMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V +  V++  +I++++ +G +IR+  ++I    R T GV + +  + ERV SV 
Sbjct: 750 -KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVA 808

Query: 896 RIRESEIVDEAESTE 910
           ++R +    + E  E
Sbjct: 809 KVRTASAEIDGEEVE 823


>gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
          Length = 845

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/894 (39%), Positives = 540/894 (60%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   + +                                        
Sbjct: 695 DDDGQDEVIGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++   
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSE 815


>gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279]
 gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279]
          Length = 806

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/888 (41%), Positives = 531/888 (59%), Gaps = 87/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+G  Q GV  ++K+VKCA
Sbjct: 4   VLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGK+HPHG+AAIYD L R+AQ W+LR  LI+GQGNFGSVDGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 LL DL K+TV F PNYDG+ ++P VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVD  V +IDNP++ L+ +M+++ GPDFPTGA  L R GIK AYATGRGS+ +R    
Sbjct: 184 GEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAK-LSRRGIKEAYATGRGSLKVRARVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R  +V TEIPYQVNKA ++ +IA LVR K I +IA LRDESDRQG R+ +ELK
Sbjct: 243 NE-DKNGRAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LN+LY+++ LQ+ F+VN++A+   +P+  TL+ +++ ++  R  VV +RT+Y
Sbjct: 302 RGANPQVVLNKLYKHSRLQTSFTVNLLAIVKGEPKVLTLLELMRHYLDHRGLVVRKRTEY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR+RAHVL GL IA+ ++DEV+ +IR S +   AR  LM R               
Sbjct: 362 ELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLMGR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+EVQ +AIL++RL RL GL RD ++ E   L  EI     IL    
Sbjct: 407 -----------FSLTEVQAQAILDMRLQRLVGLERDKLQAEYRELMEEIGRLEAILGDEK 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL  +++ ELL++KD+    RRT+I E       ED I  E MV+T++  G+VKR PL  
Sbjct: 456 RLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      ++ED    +F+ S H ++L F++ G VY EKV  LP  S QARG
Sbjct: 516 YRAQGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++++L L +GE +  ++   +        Y VFATK+G +++ ++ ++  ++ +G IA
Sbjct: 576 THIVSLLPLQEGEEVAALLNVRD---LTQEGYFVFATKNGLIKKTEIKEYQNLSSAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--D 733
           + L   D ++ V    + + ++L T+ GQ +RF +S +R   GR S GV GI   +G  D
Sbjct: 633 INLLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRA-TGRASQGVTGIRFKEGRDD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ I+   +                                                
Sbjct: 692 RVVSLVILPKGE------------------------------------------------ 703

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L V   G+GKRT   ++ +  R G G+   + ++  ++G L A+  V  N+ +
Sbjct: 704 ---ESEVLAVGSHGYGKRTPISEYPLQGRGGMGVITFNTNE--KVGQLAALMRVQGNEDL 758

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++S +G  IR  V+ I    RAT GV + + +  + + S   I   +
Sbjct: 759 LVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKDEIASAFVIAPQD 806



 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 105/276 (38%), Gaps = 63/276 (22%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQE 693
           F  ++   +   V+  T  G V+R  L  +    R G    A K    DE +SV   +  
Sbjct: 487 FSLEDLIEDEPMVITLTSQGFVKRTPLEAYRAQGRGGMGAQAGKTKEEDEAISVFVASMH 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+     +  +   A R + G   V  + L +G++V ++  V         
Sbjct: 547 DTLLIFTNRGRVYGEKVHEL-PEASRQARGTHIVSLLPLQEGEEVAALLNVRDL------ 599

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        +E + +  ++ G  K
Sbjct: 600 --------------------------------------------TQEGYFVFATKNGLIK 615

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +T   ++   N S  G+ A ++ + +   ALV V    + DQ++L +  G  IR  ++++
Sbjct: 616 KTEIKEY--QNLSSAGLIAINLLEND---ALVGVAIAQEGDQVMLATQSGQAIRFELSDV 670

Query: 871 RIASRATKGVVIFSTAK--DERVVSVERIRESEIVD 904
           R   RA++GV      +  D+RVVS+  + + E  +
Sbjct: 671 RATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESE 706


>gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
 gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 886

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/908 (38%), Positives = 517/908 (56%), Gaps = 95/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 20  ERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 80  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 140 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L++    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 200 NMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 259

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 260 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 318

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 319 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEV 378

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 379 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMD--------- 429

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L  +I +  
Sbjct: 430 -----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 472

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 473 DILAKPERQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 532

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 533 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 592

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  + +    Y+V AT+ G V++  L+++   
Sbjct: 593 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYDVA---KYLVLATRSGKVKKTALAEYDSP 649

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  ++DI+L +K G  ++F  +  ++   GR +
Sbjct: 650 RQGGLIAVRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQT 709

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+    GD++++M +V   D+D D                                
Sbjct: 710 AGVQGMKFRDGDELLAMDVV-QGDSDRD-------------------------------- 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 737 ------------------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGSL 776

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V ++DQI+ +   G +IR  V E++   R T+GV +    K++ ++S+ R  E++
Sbjct: 777 VGAVIVEESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEETD 836

Query: 902 IVDEAEST 909
             D  ++ 
Sbjct: 837 EDDAEQAA 844



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 96/272 (35%), Gaps = 13/272 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+  L+ Y + R+GG     ++  +     D +
Sbjct: 612 ETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENADEL 671

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S  G   K +        P  R  A +  +    G+ +  +    
Sbjct: 672 IGAALCNADDDIILVSKQGMSLKFEAND-EQLRPMGRQTAGVQGMKFRDGDELLAMDVVQ 730

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  ++  T  G  +R  +S++    R+G   K     + R  ++      + +
Sbjct: 731 GD----SDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGAVIVEESD 786

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I+   K G+ +R  ++ ++   GR + GV      K D++IS+A     D D  E+   
Sbjct: 787 QIMAIMKSGKVIRSNVAEVK-RTGRTTQGVTLAKPDKNDEIISIARNEETDEDDAEQAAA 845

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                          E  T    ++  E    
Sbjct: 846 ENGAVQNDAAAQSQAETTTENSAETGTEATSD 877


>gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
 gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
          Length = 843

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/902 (40%), Positives = 548/902 (60%), Gaps = 87/902 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGS+DGD PAA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN DID D LM+ I+ PDFPTG  I G +G++ AY TGRG IV+
Sbjct: 182 PTHNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIYGVSGVREAYETGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++I+V EIPY VNK  ++EKIA LV EK++  I+ + DE+DR+G R+
Sbjct: 242 RAKTEIE-SHPTHDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T LQS F+VN +AL   +P   +L  +++ FV  R EVV+
Sbjct: 301 VIDVKRDANASVVLNKLFKMTELQSSFNVNNIALVHGRPRLLSLKDLIRLFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ RAI+E+RL +LTGL ++ +  E   L  +I    +I
Sbjct: 411 ----------------FQLTEVQARAIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS+      +IK ELL VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +R Q RGG G  G   RDEDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L++   +++T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 RTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V     +NDI++  + G+ +RF  +A+R    R + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREMG-RTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+V+ M  +     +                                       
Sbjct: 694 LDEDGQDEVVGMICIKDPQKE--------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        I+ +SE G+GKR+   D+R +NR GKG++  ++++  + G LVA+  
Sbjct: 715 ------------TIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITE--KTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K ++ + SV ++  S+  ++
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLGKRNDSIGSVCKVN-SDTEEQ 819

Query: 906 AE 907
            E
Sbjct: 820 ME 821


>gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
 gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
          Length = 828

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/896 (41%), Positives = 554/896 (61%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  D L
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 704 ----QDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   +  E   +DE
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSIDE 813


>gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
 gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
          Length = 830

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/915 (39%), Positives = 515/915 (56%), Gaps = 93/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +    +     I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPPGD----RIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+RI G+VMG YHPHG+ +IYD + R+AQ WSLR  L++G GNFGS 
Sbjct: 57  YDGGYRPDRGYFKCSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+  DTVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 117 GNDPPAAMRYTEARMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    ++NPD   + L+E    II+GPDFPT  +I+GR G
Sbjct: 177 GIAVGMATNIPPHNLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIVGRQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E  +  R Q+VVTE+PYQVN   + EKIAELVR+ RI  I
Sbjct: 237 IEDAYRTGRGSIRMRAVVNVE-ENKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGI 295

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+RDE+  R G R+VI+LKR A A V+LN LY++T LQ  F  NM+A+    P    L 
Sbjct: 296 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA++R HVL GL IA+ +LD+V+ +IR + + + AR 
Sbjct: 356 QMIRYYVEHQVDVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARG 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 416 QLMTR--------------------------YSLSEIQATAILDMQLRRLAALERQRIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++ E   IL+S  R   II +EL  V D+    RRTRIV    +M  ED I +
Sbjct: 450 EAAELRAKVTELEAILASPQRQREIIGEELKEVVDKFGDERRTRIVPFEGEMSIEDLIAQ 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 510 EDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNK 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+  Q ERI  +M   +  ++    Y+V ATK G
Sbjct: 570 GRVYRAKAHELPEQARSAKGQHVANILAFGQDERIAEVMAIRDYAAA---PYLVLATKRG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             +++ L+DF      G +A+ L   DE++       ++D+LL ++  Q +RF     ++
Sbjct: 627 LCKKSALTDFDSNRAGGLVAINLREDDEVIGARLVGADDDLLLVSRNAQSIRFHADDEQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+     D+++S+ ++                                 
Sbjct: 687 RPMGRATAGVIGMRFDADDELLSIEVIKPD------------------------------ 716

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L  +  GF KRT   ++ +  R GKG+    +  
Sbjct: 717 ---------------------STASLLVATSGGFAKRTHLNEYPLQGRGGKGVLTARI-- 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   G LV    V  +DQ+  ++  G ++R    ++R A R T GV +       +VV V
Sbjct: 754 VPSRGNLVGALVVEPDDQLYAIASNGGVLRTVARDVRQAQRQTMGVKLIDLETGVQVVGV 813

Query: 895 ERIRESEIVDEAEST 909
            R  +++  D  E T
Sbjct: 814 ARNADADDGDGDEPT 828


>gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
 gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
          Length = 866

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/905 (39%), Positives = 538/905 (59%), Gaps = 85/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   +++   +  I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSV
Sbjct: 60  NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ A
Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R    IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +R
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R
Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I  E   L
Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIETEYTDL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I++  DIL+   R+  II QELL + ++    RRT + V  +  +EDED I  E+++
Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           ++++H GY+KR+  S +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VY
Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + +P    QA+G  +IN+L L+ GER+  ++    D ++  + ++ F TK G V+R
Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +S+F  I + G  A+ L   D ++SV     + +I++ +  G  V F  S +R    R
Sbjct: 633 TAVSEFTNIRQLGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L   D V+                                           
Sbjct: 692 TASGVRGMNLRDKDYVVG------------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L +    +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G
Sbjct: 710 -----------ADLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V+ ++ I++ +D G +IR    ++ I  RAT GV +    +  +V ++ ++ +
Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816

Query: 900 SEIVD 904
            E  +
Sbjct: 817 EEDEE 821


>gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
 gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
          Length = 904

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/908 (38%), Positives = 517/908 (56%), Gaps = 95/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L++    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMD--------- 447

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L  +I +  
Sbjct: 448 -----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  + +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYDVA---KYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  ++DI+L +K G  ++F  +  ++   GR +
Sbjct: 668 RQGGLIAVRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+    GD++++M +V   D+D D                                
Sbjct: 728 AGVQGMKFRDGDELLAMDVV-QGDSDRD-------------------------------- 754

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 755 ------------------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGSL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V ++DQI+ +   G +IR  V E++   R T+GV +    K++ ++S+ R  E++
Sbjct: 795 VGAVIVEESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEETD 854

Query: 902 IVDEAEST 909
             D  ++ 
Sbjct: 855 EDDAEQAA 862



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 97/272 (35%), Gaps = 13/272 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+  L+ Y + R+GG     ++  +     D +
Sbjct: 630 ETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S  G   K +        P  R  A +  +    G+ +  +    
Sbjct: 690 IGAALCNADDDIILVSKQGMSLKFEAND-EQLRPMGRQTAGVQGMKFRDGDELLAMDVVQ 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  ++  T  G  +R  +S++    R+G   K     + R  ++      + +
Sbjct: 749 GD----SDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGRGSLVGAVIVEESD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I+   K G+ +R  ++ ++   GR + GV      K D++IS+A     D D  E+   
Sbjct: 805 QIMAIMKSGKVIRSNVAEVK-RTGRTTQGVTLAKPDKNDEIISIARNEETDEDDAEQAAA 863

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                     +    E  T    ++  E    
Sbjct: 864 ENGAVQNDAAVQSQAETTTENSAETGTEATSD 895


>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
 gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
          Length = 833

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 545/891 (61%), Gaps = 87/891 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SY+ YA++VI+GRAIPD+RDGLKPVHRR+LF M +MG  WNK Y K ARI 
Sbjct: 12  VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+++GKYHPHG+AA YD + R+AQD+S+R  LI+GQGNFGS+D DPPAA RYTE R+ + 
Sbjct: 72  GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              +L DL KDTVDF PNYD S  EP +L +R P +L+NG  GIAVG+ATNIP HN+ EV
Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE- 257
           + G +A+I NP++ L+ +M+ I GPDFPT   I GR GI +AY TGRG I +R    IE 
Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFINGREGIISAYRTGRGIIRLRAKVVIEK 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               DRE IVVTEIPYQVNKAA++EKI+ELV+EK+I  I+DLRDESDR+G R+VI+LKR 
Sbjct: 252 NERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +++VILNQLY++T ++S F + M+A+   +P  F LI ILK+F+ FR+ V+VRRT + +
Sbjct: 312 ENSNVILNQLYKHTQMESTFGIIMLAIENGQPHVFNLIEILKSFIEFRKVVIVRRTTFEV 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKAR+RAH+L GL IA+ N+DEVV +I+ S +P+ A   L  R                 
Sbjct: 372 NKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSR----------------- 414

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+++Q RAIL++RL RLTGL +  I+ E ++L  EI+    IL    ++
Sbjct: 415 ---------FSLTDIQARAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKV 465

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L +I  E+  + D     RRT IV    D++ ED I  E+MVVT S  GY+KR P S+YR
Sbjct: 466 LEVIISEMEEIIDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYR 525

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGG+G+ G++ ++ED V  LFI STH  VL F++ G +Y  KV+++P     A+GK 
Sbjct: 526 TQRRGGRGKVGMMTKEEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKP 585

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N++++   ER+  ++P    E       V+ AT+ G V++  L+ +      G IA+ 
Sbjct: 586 IVNLINIGPDERVAAVLPVRSFEEGQA---VIMATRAGIVKKTDLTAYSNPRSGGIIALS 642

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           +D  DE++ V+    + D+ L T+ G+ +RF    IR    R + GVRGIS+   D VI 
Sbjct: 643 IDEGDELVDVKLTGGDQDVFLATRKGKAIRFKEDDIRTMG-RTARGVRGISMDSDDAVIG 701

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I    +A                                                   
Sbjct: 702 MDIPREGNA--------------------------------------------------- 710

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             I+TVSEKG GKRT+  ++R+  R GKG+    +  + + G +  +  V   + ++L+S
Sbjct: 711 --IVTVSEKGCGKRTAVSEYRLQKRGGKGMINLRI--VPKGGLVADILQVTGEEDLLLMS 766

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + G +IR+ V ++ +  R T+GV +     +E++V +    E E+ +E ++
Sbjct: 767 NSGKIIRMKVEDVPLIHRVTQGVKLIELDAEEQLVGMTS-AEREVREEEDN 816


>gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
 gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
          Length = 867

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/917 (39%), Positives = 522/917 (56%), Gaps = 96/917 (10%)

Query: 1   MTEHIISSDEEEEKGI-----TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++   +       G+       + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR
Sbjct: 1   MSDDNNNDGSSFGSGVLGHQVRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M   G    + YVK A+   + MG YHPHG++AIYD + RMAQ WS+R  L++GQG
Sbjct: 61  ILYAMFDNGYRPERGYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   D PAA RYTE RL   A  ++ D+ ++TVDF+PNYDG   EPV+L +R P +L
Sbjct: 121 NFGSRGDDGPAAMRYTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVI 231
           +NG GGIAVGMATNIP HNL EV D     +DNPD      LDA+ME I+GPDFPT A I
Sbjct: 181 MNGSGGIAVGMATNIPPHNLREVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +G  GIK AY TGRGSI +RGV+ IE+  G R+ IV+TE+PYQVN   M+  IA+ V++ 
Sbjct: 241 VGDKGIKEAYTTGRGSIRMRGVTSIEQE-GTRQSIVITELPYQVNPDRMIANIADQVKDG 299

Query: 292 RIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           R+  IA + DESD + G R+V++LKR A   V+LN LY+++ LQ+ F  NM+A+    P 
Sbjct: 300 RLQGIASIDDESDLKWGMRIVVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              +  ++  +VA + EV+VRRT+Y L++   RAH+L GL  A+  LDEV+ +IR S   
Sbjct: 360 TLRIDQMVTLYVAHQIEVIVRRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSATV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +TAR  LM                          G + + E+Q  AIL ++L RL  L R
Sbjct: 420 DTARTGLM--------------------------GLLDIDEIQADAILAMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I +EL  + +EI +  DIL++  R   I+K+EL  V ++    RRT+IV    D+ +E
Sbjct: 454 QKIIDELAEIELEIADLKDILANPDRQRAIVKEELGEVVEKYGDDRRTQIVAAEGDVTEE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I RE++VVT++  GY KR  +  Y+AQRRGGKG  G  ++ +D V   F+ STH  +L
Sbjct: 514 DLIARENVVVTITSTGYAKRTKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWIL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP  +  ARG+ + N+L     ERI  ++     +S  ++ Y+V 
Sbjct: 574 FFTNKGRVYRLKAYELPEATRAARGQHVANLLEFQPEERIAEVLQI---QSYQDSPYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++++L D+     +G IA+ L   D ++    C+ ++D+LL ++ GQ +RF  
Sbjct: 631 ATSEGKVKKSRLEDYESARSAGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTA 690

Query: 711 SAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S   +   GR + GV+G+     D+++SM +V                            
Sbjct: 691 SDDALRPMGRATAGVQGMRFKGDDKLLSMVVVEE-------------------------- 724

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      E  +L  +  GFGK+T   ++   NR G G+  
Sbjct: 725 ---------------------------EHNLLVATTGGFGKKTKLSEYTPQNRGGMGVLT 757

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                  + G L+    V+++D+I  V+  G +IR  VNEIR  SRATKGV + + A   
Sbjct: 758 LKYDP--KRGPLMGALVVDNDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADGV 815

Query: 890 RVVSVERIRESEIVDEA 906
            +++++R  E E  + A
Sbjct: 816 ELLAIDRNVEDEGEETA 832



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 100/266 (37%), Gaps = 14/266 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E + ++           +V  +  G VK+  L  Y + R    G   + +R+ D +   
Sbjct: 610 EERIAEVLQIQSYQDSPYLVLATSEGKVKKSRLEDYESARSA--GLIAINLREGDSLIGA 667

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + S    +L  S  G   +       +  P  R  A +  +     +++ +++   E+ 
Sbjct: 668 RLCSADDDLLLVSERGQAIRFTASDDAL-RPMGRATAGVQGMRFKGDDKLLSMVVVEEE- 725

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
                  ++ AT  G  ++ KLS++   NR G   + L    +   ++       +++I 
Sbjct: 726 -----HNLLVATTGGFGKKTKLSEYTPQNRGGMGVLTLKYDPKRGPLMGALVVDNDDEIF 780

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI-VLHADADYDERICYMK 756
             T  G  +R  ++ IR    R + GVR ++LA G +++++   V     +   ++    
Sbjct: 781 AVTSAGDIIRTNVNEIRA-TSRATKGVRLVNLADGVELLAIDRNVEDEGEETASKVSEAG 839

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVE 782
            +    +          +   DS  E
Sbjct: 840 TLDVVPKRTGAAKSTGAAESGDSEAE 865


>gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672]
          Length = 805

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/889 (42%), Positives = 551/889 (61%), Gaps = 87/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +EKGI  +SI D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MG+  NK Y
Sbjct: 4   KEKGIIDISIEDSIKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GK+HPHG++A+YD L R+AQD+S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 64  KKSARVVGDVIGKFHPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K    LL D+ KDTVDF PNYDGS +EP+VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 124 EVRMAKITDELLLDIDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  +  IDNP+  LD +++ I+GPDFPT  +++G + +K AY TGRG+I IR
Sbjct: 184 PHNLGEVVDALIHRIDNPESTLDDILKFIKGPDFPTAGILMGVSDLKTAYLTGRGAIKIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    +EQIV+TEIPYQVNK++++EKIAELVR+K IV I +LRDESDR G RVV
Sbjct: 244 ARAEIQQLKSGKEQIVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+G   DVILNQLY++T ++  F +N VAL   +P+   L+ IL  F+  R  +V R
Sbjct: 304 IEIKKGELPDVILNQLYKFTQMEVTFGINTVALVNGRPQTLPLLKILDEFIGHRITIVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+LL KA +R H+L GL  AV N+DEV+ II+ S + + A+ +L+ R           
Sbjct: 364 RTKFLLRKAEERLHILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDR----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S++Q  AIL+++L +LTGL  + +  E       I+    IL
Sbjct: 413 ---------------FSFSDLQVSAILDMKLQKLTGLEIEKLVEEYKETLKNIEYYKSIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++   L+GIIK ELL +KD+    RRT IV    ++  ED I   +MVVT+++ GY+KR 
Sbjct: 458 NNHQILMGIIKDELLEIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS + +Q+RGGKG+S  + + EDF+  L + S H+ +LFF++ G ++  KV+ LP  +P
Sbjct: 518 PLSFFSSQKRGGKGKSATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAP 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
             RG+ + N+LS +QGE I +++   + +   ++ Y+   TK+G V++  + +F    RS
Sbjct: 578 GTRGRHISNLLSFSQGEYIASVVTLSDLD---HDKYIFMCTKYGIVKKTAVEEFKS-GRS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G +AMKL   DE++S    T  ++I + T+ G+ ++F    +R    R + GVRGI+L +
Sbjct: 634 GIVAMKLRENDELVSTVITTDNDNITIATRNGKTIQFESKEVRDMG-RTATGVRGITLEE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SM ++  A                                               
Sbjct: 693 DDYVVSMEVLTGA----------------------------------------------- 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                  FILTV+  G+GK +   D+RI +R GKG++ + V+   + G +V    V   D
Sbjct: 706 ------PFILTVTSNGYGKCSLVSDYRIQSRGGKGLKLSKVTP--KTGPIVGAKQVKLED 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            ++L+S  G +IR+ V++I +  R T+GV + S A DE +VS   ++E 
Sbjct: 758 DVMLMSKTGKIIRIAVSDIPVLGRDTQGVKLMSVADDE-IVSFAIVKEE 805


>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
          Length = 845

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/894 (39%), Positives = 539/894 (60%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNFLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   + +                                        
Sbjct: 695 DDDGQDEVIGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++   
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSE 815


>gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
 gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
          Length = 842

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V++NP++    LME+I GPDFPTGA+++GR+GI  AY TGRGSIV+R
Sbjct: 182 PHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVMGRSGIHRAYDTGRGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L ++KRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYILHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELMQR           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E ++L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDALIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   R+  II +E+  VK +    RRT + V  +L +EDED I  ED+++T+S++GY+KR
Sbjct: 456 SKPERVQTIIIEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+   + E    + Y  F TK G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDDGETIQTIINARKVE--VADKYFFFTTKGGVVKRTSASEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ T+ G  VRF  S+IR    R++ GVRG+ L 
Sbjct: 634 NGLRALNLKEDDELINVLLTDGTEDIIIGTRSGYSVRFNESSIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  + +                                                 
Sbjct: 693 DEDMVVGASRI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRT++ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 704 ----TDDQEVLIITENGYGKRTAASEYPTKGRGGKGIKTANITAKN--GPLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++++++KG +IR  ++ +    RAT GV +    +D ++V+   +     V+E  STE
Sbjct: 758 EDMMIITNKGVIIRTSISNVSQTGRATLGVRVMRLDQDSKIVTFALVEPEPEVEEVNSTE 817


>gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 858

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 545/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   + +                                        
Sbjct: 695 DNDGQDEVIGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 110/253 (43%), Gaps = 11/253 (4%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D+   +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + + +  
Sbjct: 604 DDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQ--NGVNAITIREDDSVIEVRMTNGNNE 661

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     + +    A G   I + +  Q E +  ++   + E+      V
Sbjct: 662 IIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDE-VIGMICIKDLETES----V 716

Query: 649 VFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +  ++ G  +R+++ D+ + NR GK        +   +++++++ T END+++  K G  
Sbjct: 717 MVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGIT 776

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  ++ +R+   R + GVR I+L K +  I     +  ++  DE        +    L 
Sbjct: 777 IRLKVADVRIMG-RATQGVRLINLEKRNDQIGSVCKVMTESLEDEVPAEEAEGTIVSDLT 835

Query: 766 SGDTEEITSLKND 778
           +    +      D
Sbjct: 836 TDQDVDNADTATD 848


>gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
 gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
          Length = 859

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/894 (39%), Positives = 543/894 (60%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 ARAEIESGQA-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALIHGRPKTLNLRDLIKYFIEHRREVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   + +                                        
Sbjct: 695 DNDGQDEVVGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++   
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTE 815


>gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9]
          Length = 920

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/907 (38%), Positives = 516/907 (56%), Gaps = 95/907 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + DEM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 48  QRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNK 107

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTEC
Sbjct: 108 CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRYTEC 167

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 168 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 227

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV DG    +D+P+   + L+    E I+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 228 NMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATILGHKGIEQAYRTGRGLIT 287

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 288 MRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSGRTGQ 346

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + +V
Sbjct: 347 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDV 406

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S   E AR  LM          
Sbjct: 407 IARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTGLMD--------- 457

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + +VQ  AIL ++L RL  L R  I +E + L   I +  
Sbjct: 458 -----------------LLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYA 500

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +       RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 501 DILAKPERQRKIVGDELDEIVARYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHAGFI 560

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +RD+D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 561 KRTKADEYRAQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPE 620

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P+ E +    Y+V AT+ G V++ +LS++   
Sbjct: 621 GSRDSKGQHVANLLQFTPDESIQTVLSIPDYEVAD---YLVLATRSGKVKKTRLSEYDSP 677

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L         DE++    C   +DI+L +KLG  ++F     ++   GR +
Sbjct: 678 RQGGLIAVRLMQDESGETADELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPMGRQT 737

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+    GD++++M ++                                        
Sbjct: 738 AGVQGMKFRAGDELLAMDVIWGE------------------------------------- 760

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +L V+ +GF KRT+  ++R+  R+G G++A  ++  +E G L
Sbjct: 761 --------------TDKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLT--DERGTL 804

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++ DQI+ +   G +IR  V+E+++  R T+GV +      + ++S+ R  E+E
Sbjct: 805 VGAVVVSEEDQIMAIMKSGKVIRSNVSEVKLTGRTTQGVTLAKPDAGDEIISIARNAETE 864

Query: 902 IVDEAES 908
              + ++
Sbjct: 865 DEADGDT 871


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/871 (43%), Positives = 532/871 (61%), Gaps = 37/871 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K   S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M   WN+
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL + +  +L D+ K+T+DF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G + ++  PD  +D L++II  PDFPTG +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIYGVSGVREGYRTGRGRVV 241

Query: 250 IRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H  E     R+ I+V E+PYQVNK  +LE+IAE VREK++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN L++ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+D+ + IIR +P P  AR+ELM RSWN+S +K
Sbjct: 362 VTRRTIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVK 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            +++                     + I SDG   LSE Q   IL++RL RLTGL +D I
Sbjct: 422 SMLERTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
            NE   +  +I E LDIL+   R+L II  EL  V  E        RR+ I     D+E 
Sbjct: 482 LNEYGDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRSEIELNASDLET 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY K  PLS YRAQ+RGG+GR     +++D+V  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS  G +Y  KVW +P GS  +RGK ++N+  L   E+IT I+P   E+ +  +N Y+
Sbjct: 602 LCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNFPDNHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  L+DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDAGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQ 761
             + +R    R + GVRG++L    +VI+M +       VL A  +   +   +   +  
Sbjct: 722 DENDVRPMG-RTARGVRGMNLEDDQKVIAMLVAGDESQSVLTATENGFGKRTPIAEYTRH 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            R   G     TS +N   V   +  E           I+ ++  G   RT   + R   
Sbjct: 781 GRGTKGMIAIQTSERNGKVVAATLVNE--------NDEIMLITTGGVLIRTRVSEVREMG 832

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R+ +G+    V +   +  L  +   +  D+
Sbjct: 833 RATQGVTLIAVEEGTTLSGLQRILESDIEDE 863


>gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
 gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
          Length = 858

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 545/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   + +                                        
Sbjct: 695 DNDGQDEVIGMICIKDLETES--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PTEE 825



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 110/253 (43%), Gaps = 11/253 (4%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D+   +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + + +  
Sbjct: 604 DDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQ--NGVNAITIREDDSVIEVRMTNGNNE 661

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     + +    A G   I + +  Q E +  ++   + E+      V
Sbjct: 662 IIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDE-VIGMICIKDLETES----V 716

Query: 649 VFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +  ++ G  +R+++ D+ + NR GK        +   +++++++ T END+++  K G  
Sbjct: 717 MVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDENDLMIINKSGIT 776

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  ++ +R+   R + GVR I+L K +  I     +  ++  DE        +    L 
Sbjct: 777 IRLKVADVRIMG-RATQGVRLINLEKRNDQIGSVCKVMTESLEDEVPTEEAEGTIVSDLT 835

Query: 766 SGDTEEITSLKND 778
           +    +      D
Sbjct: 836 TDQDVDNADTATD 848


>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
 gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
          Length = 885

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/854 (44%), Positives = 544/854 (63%), Gaps = 29/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           KGIT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI +D L+  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 252 ANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN L+  T LQ+ F VNMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 312 CKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +I+ +P+P  A++ L+ R W+  ++ D+++ 
Sbjct: 372 IFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADMLER 431

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 432 AGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 491

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ II+ EL++V+D     RRT I   + D++ ED I +ED+VVT+S  
Sbjct: 492 ELMHILASTERLMEIIRDELITVRDTYGDERRTEIGAAIHDIDIEDLITQEDVVVTLSRE 551

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L  Y AQRRGGKG+S   M+D D++  L + +TH ++L FS+ G  Y  KV++
Sbjct: 552 GYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFSTRGKAYSLKVFQ 611

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 612 LPQASRTARGKPIVNILPLEEGERITAILPVSEY---SEDKFIFMATGDGTVKKTSLDQF 668

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +G IA+ L   D ++ V+  T  N+I+L +K G+ VRF    +R    R + GVR
Sbjct: 669 AKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVRFSEEHVRGMG-RTASGVR 727

Query: 726 GISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ L   DQV+S+ +      +L    +   +   +     + R   G      S +N S
Sbjct: 728 GMKLTGEDQVVSLIVPSNEGDILTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRNGS 787

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V    +E+            + +++ G   RT   +     R+ +G+     ++     
Sbjct: 788 VVGAVQAED--------GDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDE--- 836

Query: 840 ALVAVFPVNDNDQI 853
            +V +  +++ +++
Sbjct: 837 NVVGLQRIDEPEEL 850



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 100/264 (37%), Gaps = 15/264 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +   +  G VK+  L  +   R    G   V +R++D +  + 
Sbjct: 634 ERITAILPVSEYSEDKFIFMATGDGTVKKTSLDQFAKVR--ANGLIAVNLREDDSLIGVD 691

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I +    ++ FS  G V +     +      A G   +  + L   +++ +++       
Sbjct: 692 ITTGSNEIMLFSKAGKVVRFSEEHVRGMGRTASG---VRGMKLTGEDQVVSLIV------ 742

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
             N   ++  T++G  +R K+S++   +R+  G +++K+      ++        ++ ++
Sbjct: 743 PSNEGDILTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMM 802

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  +S +     RN+ GV  I  A+ + V+ +  +   +         ++  
Sbjct: 803 ITDAGTLVRTRVSEVSQVG-RNTQGVTLIRTAEDENVVGLQRIDEPEELEILEGDVVEGE 861

Query: 759 SAQRRLISGDTEEITSLKNDSSVE 782
                +             D++ E
Sbjct: 862 EEATVITEATETPDAESDEDTTEE 885


>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
 gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
          Length = 864

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/878 (42%), Positives = 537/878 (61%), Gaps = 38/878 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GK
Sbjct: 1   MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLL 143
           YHPHG+ A+YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRLQ   +  LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG V
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT---- 259
           A+I NP+I    LM+ I GPDFPTGA +LG +GI+ AY TGRGSI +RGV+ IE      
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGTSGIREAYTTGRGSITMRGVATIETVQQRG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DRE I++TE+PYQ NKAA++EKIA++V EKR+  IAD+RDESDR G R+VIELKR + 
Sbjct: 241 RQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDSY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN LY+ T LQ+ F  NM+AL   KPE   L   L+ F+ FR E + RRT+Y L K
Sbjct: 301 PRVVLNNLYKQTPLQANFGANMLALVNGKPEILNLKKFLEVFLDFRIESITRRTRYELRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A  R H+L GL IA++ LDE++ +IR +P+  TA+ EL+                     
Sbjct: 361 AEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELITN------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DIL+ R R+L 
Sbjct: 402 -------YGLSEVQADAILQMQLRRLTALEADKIRQEHEDLQTQIADLQDILARRERILE 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II+ E+  +K+   TPRRT I+ G  ++++ D I  E  ++ V+  GY+KR+P++ + AQ
Sbjct: 455 IIETEIAQLKESFSTPRRTVILPGEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            R  +G++   ++D+D +        H S+LFFS  G VY  K +++P+ S  +RG A++
Sbjct: 515 SRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+I+P  E        Y+V  TK GN+++ +L+ F  I  +G IA+ L+
Sbjct: 575 QMLPIPREEKITSIVPVDE---FSREEYLVMLTKGGNIKKTELASFSNIRANGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISM 738
             D++  V     E+ IL+ ++LG  + F  +  ++    R + GVR + L KGD+++ M
Sbjct: 632 EGDQLRWVRRARVEDSILVGSRLGMAIHFRCTHEQLRPLSRATRGVRAMKLKKGDELVGM 691

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I+  A  D                + + + E +     ++  +   +E           
Sbjct: 692 DILPAAILDTLNTDEPETAEIEAVEIEAVEIEAVEIEAVETENQEETAEVTS--TGSIGP 749

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVS 857
           ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +  V ND+D+I++V+
Sbjct: 750 WVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKGKDKLATLRIVNNDHDEIMMVT 809

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +G +IR  VN I I SR+  GV +    +++ +  V 
Sbjct: 810 KRGIIIRQAVNAISIQSRSATGVRVQRLDEEDAINGVA 847


>gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
 gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
          Length = 884

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/913 (43%), Positives = 548/913 (60%), Gaps = 76/913 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADSCRPETLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + ILSS  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P  S  ARG+ L+N+L            P   DE           T       
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLL------------PLDSDE--------YITT------- 634

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                                   +L VE  T+ + I + T  G   + P+     F+ +
Sbjct: 635 ------------------------MLPVEEYTEGHFIFMATAKGTVKKTPLE---SFSRQ 667

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            SVG+  + L +GD +IS AI      D +  +          R    D   +       
Sbjct: 668 RSVGLIALELDEGDVLISAAIT-----DGEREVMLFSDGGKVTRFKESDVRAMGRTARGV 722

Query: 780 SVEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                   ++   +    +   ILT SE+G+GKRT+  +F    R G+G+ A   +  N 
Sbjct: 723 RGMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN- 781

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   AKDE++V +ER+
Sbjct: 782 -GRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERV 840

Query: 898 RESEIVDEAESTE 910
           +E   V E E+ E
Sbjct: 841 QEPSEV-EGEALE 852



 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 112/270 (41%), Gaps = 18/270 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M   +       +   +  G VK+ PL  +  QR    G   + + + D +    
Sbjct: 630 EYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRS--VGLIALELDEGDVLISAA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      V+ FS  G V + K   +      ARG   +  + L +G+++ +++  PE+ S
Sbjct: 688 ITDGEREVMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IPEEGS 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++ A++ G  +R  +S+F +  R G+  + + S D    ++         +I+L
Sbjct: 744 Q-----ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  ++ +     RN+ GV  I LAK ++++ +  V        E    ++  
Sbjct: 799 ISDQGTLVRTRVAEVSSLG-RNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEA---LEGE 854

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +  +I+   + +     D++ +    +E
Sbjct: 855 EFEGEVIAAGDDNVDEPTLDAAADEEEPQE 884


>gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
 gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
          Length = 844

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/903 (40%), Positives = 537/903 (59%), Gaps = 97/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M+  Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R +L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +  D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +ID+      +  ++ +MEII+GPDFPTGA ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R VS+IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S R+G RV IEL+R  + +V+LNQLY++T LQ  F V M+AL   +P+  +L+
Sbjct: 294 ITDLSDQSSREGMRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMSLL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++  +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S   + A+ 
Sbjct: 354 EILNHYLKHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKA 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q++AI+++RL  LTGL R+ +  
Sbjct: 414 ELMSR--------------------------FNLSDAQSQAIVDMRLRALTGLEREKLET 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I E   IL+ R  LLG+IK+E+L + ++    RRT I     D+  ED I R
Sbjct: 448 EYAELEKKIAEYKAILADRKLLLGVIKKEILVISEKYGDDRRTAIGFDEYDISTEDLIPR 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+V+T++ +GY+KR+    +++Q RGGKG  G+   DED+V +LF+ +TH  ++FF++ 
Sbjct: 508 EDVVITMTKMGYIKRMSNDTFKSQNRGGKGIKGMQTLDEDYVEELFMTNTHQYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y+ K + +P     +RG A+INIL L   E+IT ++P  + +      Y+  ATK G
Sbjct: 568 GRCYRLKGYEIPEAGRTSRGTAIINILQLQPDEKITAMIPIKDFKEGD---YLFMATKKG 624

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  + D+  + ++G  A+ L   DE++ V+    E D++L T+ GQC+RF  S +R 
Sbjct: 625 LVKKTPILDYANVRKTGLAAITLREDDELIEVKITDDERDVILVTQYGQCIRFHESDVRS 684

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR S+GVRG++L+  D+V++M +    DA  +E +   +                   
Sbjct: 685 -TGRTSMGVRGMNLSDRDEVVAMQL----DAQGEELLIVSEKGMG--------------- 724

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                             KRT   +F   NR GKG++   +++ 
Sbjct: 725 ----------------------------------KRTRMEEFTAQNRGGKGVKCYKITE- 749

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V    V  +D+I++++  G +IR+    I +  R T GV + +  + E V S+ 
Sbjct: 750 -KTGNVVGAKAVGPDDEIMIINTDGIVIRMECAGISVLGRITSGVKLINLKEHEEVASIA 808

Query: 896 RIR 898
           ++R
Sbjct: 809 KVR 811


>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
 gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 831

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/887 (39%), Positives = 542/887 (61%), Gaps = 86/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL R+AQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKADIEEEK-GRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V+LNQLY++T LQ  F + M+AL   +P+   L  IL  ++ F++EV+ R
Sbjct: 302 IELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYLEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L   I     IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL  +K++    RRT IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELTEIKNKYGDERRTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   + +   +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEIVKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+ I+L +
Sbjct: 633 GLIAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPMG-RTASGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 DDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ L+++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 DVVLEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803


>gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
 gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
          Length = 848

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/893 (40%), Positives = 547/893 (61%), Gaps = 86/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGS+DGD  AA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG  I G +G+++AY TGRG +V+
Sbjct: 182 PTHNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++IVVTEIPY VNKA +++ IA+L  +K+I  I+++ DE+DR+G R+
Sbjct: 242 RAKAEIE-SHPTHDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R EVV+
Sbjct: 301 VIDIKRDANASVVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMAR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS+      +IK ELL VK++    RR+ IV    +   ED    ++MV+T+SH+GY+KR
Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDNRRSEIVYASEEFNPEDFYADDEMVITISHMGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   R+EDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L++   + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIEADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R    R + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMG-RTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M  +   + +                                       
Sbjct: 694 LDEDGQDEVIGMICIKDPETE--------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        I+ VSE G+GKR+   D+R +NR GKG++  +++  ++ G+LVA+  
Sbjct: 715 ------------TIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGSLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K ++++ SV ++ 
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEKRNDQIGSVCKVA 813


>gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232]
 gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A
 gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232]
          Length = 828

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 554/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++++++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   +F    ++G  +RA  + + ++   L+ V   +  D II+ +  G  +R     IR
Sbjct: 623 TEVSEFNNIRQNG--LRALKLKEGDQ---LINVLLTSGQDDIIIGTHSGYSVRFNEASIR 677

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R+  GV      +D+RVV   RIR+++ V
Sbjct: 678 NMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 88/211 (41%), Gaps = 15/211 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQ--NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + +R+       +++       V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATG---VRGVKLREDDRVVGASRIRDNQE------VLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A       ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++GV+ + L    ++++  +V   D+   E
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAE 813


>gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2]
          Length = 864

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/913 (42%), Positives = 550/913 (60%), Gaps = 76/913 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   EFAQEIFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YDAL RMAQ++S+R +LI+GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH L  DL K+TVDF  NYDGS  EP V  ARYPN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +A+ID+PD D + L+  + GPDFPT  +I G  GI+ AY TGRG +V+
Sbjct: 183 PPHNLTEILNATIALIDDPDTDDETLLSHVPGPDFPTAGIINGAAGIREAYLTGRGRVVM 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +H E+     +  I+VTE+PYQVNKA ++E+IAELVREK+I  I +LRDESD+ G R
Sbjct: 243 RARTHFEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG   DV+LN LY+ T +QS+F +NMVA+ G +P    L  IL  F+  R EVV
Sbjct: 303 IVIELRRGELPDVMLNNLYQQTQMQSVFGINMVAIVGGQPRTLGLRDILTVFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAH+L GLA+A+AN+D ++ +I+ +P    AR  LM ++W++  +  
Sbjct: 363 TRRTIYDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHA 422

Query: 430 LIDLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           L++  D ++         + +  D +  LS+ Q +AILE+RL RLTGL +D I  E  SL
Sbjct: 423 LLERADAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSL 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL S SRL+ +I+ EL+++ +E    RRT IV    D+  ED I  ED VV
Sbjct: 483 LEKIIDLLDILRSESRLMQVIRDELVAMIEEFGDARRTEIVFDYEDLSIEDLIAEEDRVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY+K   LS Y++QRRGG+G+S   M+DED +  L + STH   L F++LG VY 
Sbjct: 543 TLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGRVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP G+  ARG+ ++NIL L +GER+                              
Sbjct: 603 RKVYQLPQGARGARGRPVVNILPLQEGERVNA---------------------------- 634

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                                  +L V     ++ I   T  GQ  + P+     F+   
Sbjct: 635 -----------------------LLPVREFVDDHYIFFATATGQVKKTPLVD---FSRPR 668

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             G+  I L   D+++   +        D     M   +A + +   + +  +  +    
Sbjct: 669 QAGIIAIDLRDDDRLVGARLT-------DGSRELMLFSNAGKSIRFAEADVRSMGRTAGG 721

Query: 781 VEGNISEERCQELKL---KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           V G   +E  + + L    E  +LT +E G+GKRT   DF +  R G+G+ A   S+ N 
Sbjct: 722 VRGIRMDEMQRVVSLLVVGEGQVLTATEHGYGKRTPIDDFPLQGRGGQGVIAIQTSERN- 780

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GALV    V D D++IL+SD GTL+R  +++I   SR T+GV++   + DE++V +  +
Sbjct: 781 -GALVGAALVQDEDEVILISDAGTLVRTEISQISSVSRNTQGVILIRLSDDEKLVQLAAV 839

Query: 898 RESEIVDEAESTE 910
               +  +A+  E
Sbjct: 840 SAMSVDSDADRDE 852


>gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
          Length = 894

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/908 (38%), Positives = 514/908 (56%), Gaps = 95/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + E AR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLMD--------- 447

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L   I +  
Sbjct: 448 -----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F  +  ++   GR +
Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD+++ M +V                                        
Sbjct: 728 AGVQGMKFREGDELLDMDVVWGD------------------------------------- 750

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +  V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 751 --------------SDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--RGSL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V ++DQI+ +   G +IR  V+E++   R T+GV      K++ ++S+ R  E +
Sbjct: 795 VGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKD 854

Query: 902 IVDEAEST 909
             + AE+ 
Sbjct: 855 DDESAENA 862



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 100/267 (37%), Gaps = 13/267 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+  L+ Y + R+GG     ++  +     D +
Sbjct: 630 ETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMADENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +   +G+ +  +    
Sbjct: 690 IGAALCNAEDDIILVSKLGMSLKFQAND-EQLRPMGRQTAGVQGMKFREGDELLDMDVVW 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K     + R  ++      +++
Sbjct: 749 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGRGSLVGAVIVEEDD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I+   K G+ +R  +  ++   GR + GV      K D++IS+A     D D       
Sbjct: 805 QIMAIMKSGKVIRSNVDEVK-RTGRTTQGVTFAKPDKNDEIISIARNEEKDDDESAENAT 863

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSV 781
           +   +AQ    + +    T+ ++    
Sbjct: 864 VNEDTAQSSESAVEAPAETNAESGDGE 890


>gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
 gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
          Length = 874

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/837 (45%), Positives = 535/837 (63%), Gaps = 16/837 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVDE---FSEDKFIFMATGDGTVKKTPLTQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R    R + GVR
Sbjct: 663 ANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMG-RTAAGVR 721

Query: 726 GISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+ LA+ DQV+S+ +     D     +  Y K          G   +       S   G 
Sbjct: 722 GMKLAEDDQVVSLIVPANEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGP 781

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +      E   +   ++ +++ G   RT   +     R+ +G+     ++   +  L
Sbjct: 782 VVGAVQVE---EGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGL 835


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/891 (41%), Positives = 549/891 (61%), Gaps = 87/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSI + +  SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+     Y K A
Sbjct: 3   VIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG++A+Y+AL RMAQ +S+R+ LI+GQGNFGS+DGD  AA RYTE RL
Sbjct: 63  RIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEARL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++D  + +IDN D  L+ +++ ++GPDFPTG  I G++GI  AY TGRGSI IR   H
Sbjct: 183 EELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIFGKSGIIEAYKTGRGSIKIRAKHH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G++E IV+ E+P+QVNKA ++EKI++LV++K +  I+++RDESDR+G RVVIELK
Sbjct: 243 IEH-KGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +++ILN LY++T +Q  F +NM+ +   +P+ F L  +L  F+  R+ VV+RRT Y
Sbjct: 302 KDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTIY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+  L+ R               
Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++VQ +AIL++RLARLT L  + + NE   L  +I+    IL   +
Sbjct: 407 -----------FELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDEN 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L G+IK ELL +K +  TPR T I E    ++ ED I  E+MVVT++H GYVKRVPL  
Sbjct: 456 ILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+  + + ++DF+ D ++ ++H +++  +  G ++  KV+R+P GS  ++G
Sbjct: 516 YERQNRGGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+++L++ E+I TI+   + E    +  + F TK+G V+R  LS+F  I  +G  A
Sbjct: 576 KAIVNLINLDKDEKIQTII---KTEDFDESKSLAFFTKNGIVKRTNLSEFKNIRSTGVRA 632

Query: 676 MKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           + +D  DE+++ +     +  + + TK G  +RFP+  +R    R + GV GI    +GD
Sbjct: 633 ITIDEGDELVTAKIVEPGDKELFIVTKKGMAIRFPVDTVREMG-RTARGVTGIRFKIEGD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+    +                                                    
Sbjct: 692 EVVGALALQD-------------------------------------------------- 701

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             + Q ILT+SEKGFGKRT +  +R++NR GKG+ A  ++  N+ G LV V     +  +
Sbjct: 702 --ENQEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEKDHDL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++++  G +IRV ++ I    + T+GV +      ++VVS+ +    +  +
Sbjct: 758 MVLTSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEEE 808



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 71/133 (53%), Gaps = 9/133 (6%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +++E +      ++L   E+ ++T++ +G+ KR     +   NR GKG +A  + + + I
Sbjct: 478 TNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYEDDFI 537

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
                 +  N +D +++++D+G L  + V  I   SR +KG   V + +  KDE++ ++ 
Sbjct: 538 ED---FYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQTII 594

Query: 896 RIRESEIVDEAES 908
           +   +E  DE++S
Sbjct: 595 K---TEDFDESKS 604


>gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/897 (40%), Positives = 554/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  +  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D+++  + Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--DHYLFFATRQGIVKRTNVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R    R + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNMG-RTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                                                 
Sbjct: 693 EGDHLVGATIVSDD---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +E  +L+ +  G   RT + ++    R GKGI    V+  ++ G L  +  V  +
Sbjct: 707 -----QEVLVLSENGYGK--RTPASEYPTKGRGGKGIITLKVA--DKNGPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  +  I    R+T GV +    ++ ++++   +  ++  ++ E
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAADQKEQEE 814


>gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 839

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/895 (39%), Positives = 540/895 (60%), Gaps = 84/895 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ ++     IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MAENDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGS+DGD P
Sbjct: 61  TPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIPTHNLGEV+     ++DNPD   + LM+++ GPDFPTG V++G++GI+ AY TGR
Sbjct: 181 MATNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVMGKSGIRKAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R    IE+    R+QIVV EIPY VNKA ++E+IA+L R K I  I D+ DE+DR
Sbjct: 241 GTIVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +
Sbjct: 301 EGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKEILQYYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E VV RRT++ L KA +RAH++ GL IA+ ++DE++ IIR S   E A+ +LM+      
Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMEN----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL R+ I  E   L   I 
Sbjct: 416 ---------------------YGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+ + R+  II  ELL ++ +    RRT + V  + ++EDED I  E ++VT++H
Sbjct: 455 DYKDILAHQERINQIIYDELLEIQKKFGDKRRTELQVGDITNIEDEDLIEEESIIVTLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L    TH  +LFF++ G VY  K +
Sbjct: 515 NGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L ++  E+I+ ++     E++ ++ ++ F TK G V+R  +++
Sbjct: 575 EIPEYGRSAQGIPIINLLGIDNKEKISAVINVSH-ETNDDDKFLFFTTKQGTVKRTPVTE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE++ V+    + ++++ T  G  + F  S +R    R++ GV
Sbjct: 634 FKNIRSNGLKAINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVRSMG-RSAAGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D  +     L  D++                                     
Sbjct: 693 RGIRLR-DDDYVIGTAPLDDDSN------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SE G+GK+T + ++ I  R G G++  +V+K N  G LV +
Sbjct: 715 ---------------VLVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKN--GPLVGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V  ++ I+LV+D G +IR  V  +    R+  GV +        V ++ ++ +
Sbjct: 758 TTVKGDEDIMLVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTHVATIAKVEK 812


>gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
 gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
          Length = 848

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/893 (41%), Positives = 547/893 (61%), Gaps = 82/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   HGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +++K A  ++ D+ KDTVD   N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EAKMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A ID+ DID++ LME ++ PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G +  E+    RE +VVTEIPYQVNKA M++K A+LV EK+I  I+ +RDESDR G R+V
Sbjct: 243 GKAVFEEVQ-GRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +LM+R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R+E + L   I++  DIL
Sbjct: 411 ---------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK EL  +KD+    RR+ I     DM  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKERRMQIIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y+ Q RGG G+     R+EDF+ D+F+ + H  ++FF+  G  +  +V+ +P GS 
Sbjct: 516 PLTEYKTQNRGGVGQKASTTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEPDDKVKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T +++I+L  K G+C+RF  S  R    R++ GVRGI L
Sbjct: 636 INGINAITIKEDDELLEAKLTTGDSEIMLAVKSGKCIRFEESKTRPMG-RSASGVRGIRL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A                                                   E       
Sbjct: 695 AD--------------------------------------------------EKTDEVVG 704

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   +  IL VSE G+GKR+S  D+R++NR GKG++   V+  ++ G LVA+  V D
Sbjct: 705 MVVVNNNDSDILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVT--SKTGELVAIKNVTD 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +D +++++  G  IR+ V  +R+  RAT+GV + +   D+ + +V ++++ E 
Sbjct: 763 DDDLMIINKSGIAIRLSVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDED 815



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 102/252 (40%), Gaps = 12/252 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+  L  Y   R    G + + ++++D + +  + +  + ++
Sbjct: 606 EDYINSHYVIMATKKGQVKKTSLEQYSRPR--INGINAITIKEDDELLEAKLTTGDSEIM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   + +  +       A G   I +      E +  ++    D        ++ 
Sbjct: 664 LAVKSGKCIRFEESKTRPMGRSASGVRGIRLADEKTDEVVGMVVVNNNDSD------ILV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R+ L D+   NR GK    +       E+++++  T ++D+++  K G  +R
Sbjct: 718 VSENGYGKRSSLEDYRMTNRGGKGVKTISVTSKTGELVAIKNVTDDDDLMIINKSGIAIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +RV   R + GVR I+L   D + ++A V   + + +E     +    Q +    
Sbjct: 778 LSVENLRVMG-RATQGVRLINLKGDDAIAAVAKVKQDEDNVEELEHEAEIEEDQSKKAME 836

Query: 768 DTEEITSLKNDS 779
           +        ++ 
Sbjct: 837 NLGTDVENDSEE 848


>gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
 gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
          Length = 907

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/904 (37%), Positives = 516/904 (57%), Gaps = 95/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 52  ERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYSK 111

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 112 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 171

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 172 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 231

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+P+   + L++    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 232 NMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 291

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 292 MRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSGRTGQ 350

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ ++  + +V
Sbjct: 351 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQIDV 410

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT YL  +A +R H+L GL  A+  ++EV+++IR S   E AR +LM+         
Sbjct: 411 VARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLME--------- 461

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + +VQ  AIL ++L RL  +    I +E N L  +I +  
Sbjct: 462 -----------------FLDIDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYN 504

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 505 DILAKPERQRRIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIPEENVVVTVTHSGFI 564

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 565 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 624

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 625 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSP 681

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  ++DI+L ++ G  ++F  +  ++   GR +
Sbjct: 682 RQGGLIAVRLMTDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPMGRQT 741

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+    GD++++M +V                                        
Sbjct: 742 AGVQGMKFRDGDELLAMDVVWGD------------------------------------- 764

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +L V+++GF KR++  ++R+  R+G G++A  +++    G+L
Sbjct: 765 --------------SDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEG--RGSL 808

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V+++DQ++ +   G +IR  V E++   R T+GV +    K++ ++S+    E +
Sbjct: 809 VGALIVSEDDQVMAIMKSGKVIRSDVAEVKRTGRNTQGVTLAKPDKNDEIISIALNAEKD 868

Query: 902 IVDE 905
             D+
Sbjct: 869 DADD 872



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 99/269 (36%), Gaps = 13/269 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+  L+ Y + R+GG     ++  +     D +
Sbjct: 644 ETIQTVLSIPNYEVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENADEL 703

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S  G   K          P  R  A +  +    G+ +  +    
Sbjct: 704 IGAALCNADDDIMLVSRKGMSLKFTAND-EQLRPMGRQTAGVQGMKFRDGDELLAMDVVW 762

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  ++  T  G  +R+ +S++    R+G   K     + R  ++     ++++
Sbjct: 763 GD----SDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEGRGSLVGALIVSEDD 818

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++   K G+ +R  ++ ++   GRN+ GV      K D++IS+A+    D   D+    
Sbjct: 819 QVMAIMKSGKVIRSDVAEVK-RTGRNTQGVTLAKPDKNDEIISIALNAEKDDADDQNDVQ 877

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                          +       ++  +G
Sbjct: 878 PAQSEQSDSAEQQAEQPADVQNVNTESDG 906


>gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 871

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/905 (39%), Positives = 539/905 (59%), Gaps = 89/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSV
Sbjct: 57  LGLGNTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNL EV+DGC A IDNPDID + LM+ I+ PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  + IE +    ++IV++EIPY VNKA ++E IA+LV+E R+  I++  
Sbjct: 237 YETGRGRIVLRAKAEIE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+V+++KR A+A+V+LN+L++ T LQS FSVN +AL   +P   TL   +K 
Sbjct: 296 DESGRQGMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRTKY L KA++RAH+L GL IA  N+DEVV+IIR S  P  A+R L +R
Sbjct: 356 FVEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  + +  E   L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYKEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL        ++K EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 EELIARLQLILDDPEECKRVMKLELEEVKEKFGDVRRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KR PLS +  Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHLGYIKRTPLSEFHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+L+++  + +   +      D     N Y+VFATK+G V+
Sbjct: 570 LKCYEIPEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ +   DE++ V     +N +++  + G+ V F  + +R    
Sbjct: 630 KTSLEAYSRPRTNGVNAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTMG- 688

Query: 719 RNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG+ L  GD  V+ M +V   + +                              
Sbjct: 689 RTATGVRGMRLDGGDDAVVGMIVVNDPETE------------------------------ 718

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 ++ VSE G+GKR+   D+R +NR GKG++  +++  ++
Sbjct: 719 ---------------------TVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNIT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D++ +++++  G  IR+ V   R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGKLVAIKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCK 815

Query: 897 IRESE 901
           ++ S+
Sbjct: 816 VKTSD 820



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 117/263 (44%), Gaps = 13/263 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            ++   +V  +  G VK+  L  Y   R    G + + + + D V D+ + +    ++  
Sbjct: 613 FIKNHYIVFATKNGTVKKTSLEAYSRPR--TNGVNAITIAEGDEVVDVRLTNGKNLLIMA 670

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G         +      A G  +  +      + +  ++   + E+      V+  +
Sbjct: 671 NRNGRAVYFDENTVRTMGRTATG--VRGMRLDGGDDAVVGMIVVNDPETE----TVMVVS 724

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ ++D+ + NR GK    L+  D+   +++++  T +ND+++  K G  +R  
Sbjct: 725 ETGYGKRSFVADYRKTNRGGKGVKTLNITDKTGKLVAIKNVTDDNDLMIINKSGIAIRLA 784

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++  RV   R + GVR I+L+K + VI+ ++     +D +  +      +    ++  D 
Sbjct: 785 VANFRVMG-RATQGVRLINLSKKNDVIA-SVCKVKTSDKEAELNENDEENPNNGVMLTDE 842

Query: 770 EEITSLKNDSSVEGNISEERCQE 792
             + +  N++ +EGN + +  +E
Sbjct: 843 HGVANATNEAQIEGNDASDGVEE 865


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/840 (44%), Positives = 523/840 (62%), Gaps = 34/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY++T++Q+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+  LDEV+ +IR S   E AR  LMQ+         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G  + EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L L++ E I TI+P   D    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++S +       I++ TK G  +RFP + +R    R++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMG-RSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+    D     +  Y K   A    I     +     N +   G I  
Sbjct: 694 LEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +       E+ ++ ++  G   R +  D     R+ +G++   +S  NE   +  V  V
Sbjct: 754 VKTV---TGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810


>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 827

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/898 (39%), Positives = 536/898 (59%), Gaps = 91/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ +YL YA++VI+ RA+PD RDGLKPV RRIL+ M + G+  N +Y KCA
Sbjct: 6   VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+A++YDAL R+AQ W++R  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 66  GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  LL D+ +DTV+F PN+DG +QEP+VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ DG   ++DNPD  ++ L++ I GPDFPTG  ILG  GI +AY++GRG I+IR  +H
Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGTEGIISAYSSGRGRILIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA ++E+IAELV++KRI  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN L++YTS+Q+ F  NM+AL  +G +P   +L   L+ ++  R+ V+ RRT
Sbjct: 306 QDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+  LDEV+  IR S   ETAR  LM+              
Sbjct: 366 EHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMKN------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q++AILE++L RL GL R  I +E   +   I +  DILS 
Sbjct: 413 -------------FKLSELQSQAILEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  IIK ++  +K++    RR+RI+ +   D+  ED I   +++VTV+  GY+K++P
Sbjct: 460 PERVFKIIKDDVAELKEKYGDVRRSRIIADATGDISTEDLIPDMNVLVTVTDRGYIKKLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR Q RGG+G  G+  +++D V  L + +T   +LFF++ G VY+ KV  +P  S  
Sbjct: 520 GDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE +T+++  P+ +   +  Y+V  T  G ++R KLS++  +  +G
Sbjct: 580 AKGLPLVNLISLEPGELVTSLIAVPDFD---DGEYLVMTTVKGRIKRTKLSEYSSVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD+ DE+  V+T   + DIL+TT+ GQ +RF  + +R    R + GV GI ++  
Sbjct: 637 LIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRPMG-RPASGVIGIKMSAK 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQV+ M +V                                                   
Sbjct: 696 DQVVGMDLVRP------------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +L ++  G GKRT   D+ +  R+ +G+    +   +    + A   + D+D 
Sbjct: 707 ----DSQLLVITSHGMGKRTDLEDYPVKGRATQGVITMRLKPGD---IIAAALVLTDSDI 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +  ++  G ++R   ++I    R T+GV + +  K + V +V    E  + D+++ ++
Sbjct: 760 VTTITRNGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAVS--AEPPVDDKSDDSD 815



 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 14/234 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         + +V  +  G +KR  LS Y + R    G   + +   D +  + 
Sbjct: 595 ELVTSLIAVPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRS--NGLIAIGLDTGDELRWVK 652

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             +    +L  +  G   +     +      A G   +  + ++  +++  +     D  
Sbjct: 653 TSNGDEDILMTTQHGQTIRFSQAEVRPMGRPASG---VIGIKMSAKDQVVGMDLVRPDSQ 709

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLT 699
                 ++  T HG  +R  L D+    R+  G I M+L   D I +    T  + +   
Sbjct: 710 ------LLVITSHGMGKRTDLEDYPVKGRATQGVITMRLKPGDIIAAALVLTDSDIVTTI 763

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           T+ G  +R          GR + GV  I+L K D V +++     D   D+   
Sbjct: 764 TRNGVVMRTRA-DKISKYGRTTQGVTVINLDKKDLVAAVSAEPPVDDKSDDSDA 816


>gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 862

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/835 (45%), Positives = 527/835 (63%), Gaps = 14/835 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   REILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +++R +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL D+ K+TVD+  NYDGS  EP VL  R PN+LVNGG GIAVGMATNIP H
Sbjct: 126 RMSRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+D CVA+ID+  +D+DALM+ + GPD PT  +I G  GI  AY TGRG +V+R  
Sbjct: 186 NIREVIDACVALIDDDSLDVDALMQYLPGPDLPTAGIINGTAGIHEAYRTGRGRMVMRAR 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E     + +I+V+E+PYQVNKA +LEKIAELV+EKR+  I +LRDESD+ G RVVI
Sbjct: 246 ARIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY++T LQ++F +NMVAL   +P+   L  IL AFV  R EVV RR
Sbjct: 306 ELRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQPKLLNLRQILDAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAHVL GLA+A+AN+D V+ +I+ SP P  A+  LM R W    + D+++
Sbjct: 366 TIFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDMLE 425

Query: 433 LI-----DDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  DD S  +G       LS  Q +AILELRL RLTGL ++ I  E   L  +I E
Sbjct: 426 RADATTPDDLSPDVGLGEDGYRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIGE 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL S  RL+ +I++EL++++++    RR+ I+   LD+  ED I  +D+VVT+SH G
Sbjct: 486 LIHILESGERLMEVIREELVAIREQYGDERRSEIIPQALDLTLEDLITPQDVVVTLSHSG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL  YRAQRRGG+G+S   M+D DFV  LF+ +TH ++L FSS G  Y  KV+ L
Sbjct: 546 YAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGKCYWLKVYEL 605

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS Q+RGK ++N+L L   ERI  ++P  E +   +  +V  AT +G V++  LS F 
Sbjct: 606 PQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFD---DAHFVFMATHNGTVKKTPLSHFS 662

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L + D ++ V       D++L +  G+ +RF  S +R    R + GVRG
Sbjct: 663 RPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAMG-RTAAGVRG 721

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L  G +VI++ I+   D        Y K    +     G           S   G   
Sbjct: 722 IRLEPGQRVIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSDRNG--- 778

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           E         E  I+ ++  G   RT   D    +R+ +G++   + +   +  L
Sbjct: 779 EVVGAVQVADEDEIMLITRHGTLVRTPVADISRLSRNTQGVKLISLDEDETLVGL 833


>gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
 gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
          Length = 884

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/902 (43%), Positives = 542/902 (60%), Gaps = 75/902 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADSCRPETLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P  S  ARG+ L+N+L            P   DE           T       
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLL------------PLDSDE--------YITT------- 634

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                                   +L VE  T+ + I + T  G   + P+     F+ +
Sbjct: 635 ------------------------MLPVEEYTEGHFIFMATAKGTVKKTPLE---SFSRQ 667

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            SVG+  + L +GD +IS AI      D +  +          R    D   +       
Sbjct: 668 RSVGLIALELDEGDVLISAAIT-----DGEREVMLFSDGGKVTRFKESDVRAMGRTARGV 722

Query: 780 SVEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                   ++   +    +   ILT SE+G+GKRT+  +F    R G+G+ A   +  N 
Sbjct: 723 RGMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN- 781

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   AKDE++V +ER+
Sbjct: 782 -GRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERV 840

Query: 898 RE 899
           +E
Sbjct: 841 QE 842



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 105/264 (39%), Gaps = 15/264 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M   +       +   +  G VK+ PL  +  QR    G   + + + D +    
Sbjct: 630 EYITTMLPVEEYTEGHFIFMATAKGTVKKTPLESFSRQRS--VGLIALELDEGDVLISAA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      V+ FS  G V + K   +      ARG   +  + L +G+++ +++  PE+ S
Sbjct: 688 ITDGEREVMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IPEEGS 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++ A++ G  +R  +S+F +  R G+  + + S D    ++         +I+L
Sbjct: 744 Q-----ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  ++ +     RN+ GV  I LAK ++++ +  V        E +   +  
Sbjct: 799 ISDQGTLVRTRVAEVSSLG-RNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEELEGEEFD 857

Query: 759 SAQRRLISGDTEEITSLKNDSSVE 782
                    + +E T        E
Sbjct: 858 GEVVAAGDDNVDEPTLDAAADEEE 881


>gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 868

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/912 (37%), Positives = 515/912 (56%), Gaps = 93/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  ++ D      I  + I DEMQ SY+ YA++VI+GRA+PD+RDG+KPVHRR+++ M
Sbjct: 1   MSDDTLTGDGF--DRIQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+  GE M   HPHG++AIYD L RMAQ WS+R  LI+GQGNFGS 
Sbjct: 59  YDSGYRPERSYVKSAKPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC++   A  ++ D+ ++TV+F PNYDG  +EP +L +R PN+L+NG G
Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DN        LDA+ME ++GPDFPT  +I+G TG
Sbjct: 179 GIAVGMATNIPPHNLRELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIVGDTG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+  G R+ IV+TE+PYQVN    +  IA+ +   ++   
Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEI-GSRQVIVITELPYQVNPDNFIANIADHIANGKLPGA 297

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+V+ LKR A   V+LN LY+++ L++ FS NM+++    P    L 
Sbjct: 298 SRIDDESSDRVGMRIVVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEART 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q   IL ++L RL  L R  I +
Sbjct: 418 GLIE--------------------------LLDVDEIQANEILSMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  +I +  DIL+S  R   I+  EL  + +     RRTR++    D+ +ED I R
Sbjct: 452 DLAEIERQIADLKDILASPERQRAIVGDELAEIVERYGDDRRTRLIAATGDVSEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + FI STH  +LFF++ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKAQKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     ERI  ++     E   +  Y+V AT+ G
Sbjct: 572 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEERIAQVIQIHSYE---DAPYLVLATREG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D+++     + E+D+LL ++ GQ +RF     ++
Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDQLIGAALASDEDDVLLVSEQGQAIRFTADDEQL 688

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M +V                                 
Sbjct: 689 RPMGRATAGVKGMRFRGDDQLLAMTVVHD------------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 718 ----------------------NDFLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYTP 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V + DQI  ++  G +IR  V +IR +SRAT GV +    +D  ++++
Sbjct: 756 --KRGKLIGALAVEEEDQIFAITSAGGVIRTEVAQIRPSSRATMGVRLVDLGEDVELLAI 813

Query: 895 ERIRESEIVDEA 906
           ++  E E  +EA
Sbjct: 814 DKNVEDEGEEEA 825


>gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
 gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
          Length = 822

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 553/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASVITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G+L  +  V  +
Sbjct: 708 ------EVLIITDKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAAEKEEVGTENE 817


>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
 gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
          Length = 814

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/897 (42%), Positives = 554/897 (61%), Gaps = 85/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  +++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVD + NYDG+ QEP VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTGA +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+I++TEIPYQVNKA ++EKIAEL R+K+I  I DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQ  F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVDGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+           
Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q +AIL++RL RLTGL RD I  E   L   I++  D
Sbjct: 413 -----------------FSLSEIQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L I+K+ELL VK++    RR+ I+EG +D +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVLEIVKEELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +       ++F+T+ G V+++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQE--EGTSLMFSTRFGIVKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T E DI++ T  GQ +R     +R    R S GV+GI+
Sbjct: 634 LKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQMG-RVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D VI M +V  +                                            
Sbjct: 693 LSPDDYVIGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  V+
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSVS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + EI +E
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814


>gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
 gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
          Length = 852

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/849 (44%), Positives = 522/849 (61%), Gaps = 17/849 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+AA+YD + RMAQ +++R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF  NYDGS QEP VL  R PN LVNGG GIAVGMATN+P H
Sbjct: 126 RMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+A+ID+  + +D LM  + GPD PT A+I G  GI+ AY TGRG +VIR  
Sbjct: 186 NLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAIINGVAGIREAYRTGRGRMVIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              E+     +  ++VTE+PYQVNKA +LEKIA LV+EKRI  I +LRDESD+ G RVVI
Sbjct: 246 CEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY++T L+S+  +NMVAL   +P+  +L  +L AF+  R EVV RR
Sbjct: 306 ELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQPKLHSLRDVLDAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD-IKDLI 431
           T Y L KAR+R HVL GLA+A+AN+DEV+ +I+ SP P  A+  L+ RSW     I +++
Sbjct: 366 TVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGITEML 425

Query: 432 DLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL+LRL RLTGL ++ I  E   L   
Sbjct: 426 QRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRDLLGS 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++ELL++K+    PRRT I    +D+  ED I  ED+VVT+S
Sbjct: 486 INELLAILGSGDRLMAVIREELLAIKEHYADPRRTEITANRVDLTLEDLIQPEDVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQ RGGKG++   M+DEDF+  LF+ +TH ++L FSS G  Y  KV
Sbjct: 546 HGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLCFSSHGKCYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP GS  +RGK ++N+L L+  ERI+ ++   E +   +  +V  AT+ G V++  LS
Sbjct: 606 YELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFD---DQHFVFMATRKGTVKKTPLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF +   SG IA+ L   D +++V     E +I+L T  G+ +RFP  A+R    R + G
Sbjct: 663 DFSRPRSSGIIAVNLQEDDWLVNVGITDGEREIMLLTDAGKAIRFPEDAVRPMG-RTAGG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L  G  VI + I+   D        Y K                      S   G
Sbjct: 722 VRGIQLGTGQSVIQLLILGEGDILTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERNG 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           N+          +E  I+ ++  G   R    +  I +R+ +G++   +     +  +  
Sbjct: 782 NV---VGAAQVTEEDEIMLITNAGTLVRIPVAEISIVSRNTQGVKLIALGGEERLAGVAR 838

Query: 844 VFPVNDNDQ 852
           + P+ND  +
Sbjct: 839 IEPLNDTVE 847


>gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8]
 gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus]
 gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8]
          Length = 805

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/886 (42%), Positives = 533/886 (60%), Gaps = 86/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDAL RMAQ W+LR  LI+GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ KDTVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+I+NP I L+ +M  + GPDFPTG   L + GIK AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGK-LSKKGIKEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E   G R  +VVTEIPYQVNKA+++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 VE-EKGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LNQLY++T+LQ+ F+VN++A+   +P+  +L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR  LM+R               
Sbjct: 362 ELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   +
Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL  +K +LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLES 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED  T +F+   H  +L F++ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + ++L L + E +  ++     +      Y+VFAT+ G V+R  L ++  + ++G IA
Sbjct: 576 VHVKSLLPLAEDEEVAALLSVRGLDQEG---YLVFATERGLVKRTALKEYQNLGQAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734
           ++L   D ++ V     E++ +L T+ GQ +RFP+  +R   GR++ GV G+   K  D+
Sbjct: 633 IRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKKPEDR 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +V   +                                                 
Sbjct: 692 VVSLVVVKPGEM------------------------------------------------ 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L+VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   + ++
Sbjct: 704 ---VDLLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVST--KVGRLAALLKVRGGEDLL 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++S +G  IR PV EIR  SRAT GV + +  +D+ V S   + E 
Sbjct: 759 VLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEE 804



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 62/276 (22%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQ 692
            F  ++   +   V+  T  G ++R  L  +    R GK  +A +    DE   V     
Sbjct: 486 TFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEATHVFVADA 545

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYD 749
            +D+LL T  G+  R  +  +     R + GV     + LA+ ++V ++  V   D    
Sbjct: 546 HDDLLLFTNRGRVYRLKVYELPEMG-RQARGVHVKSLLPLAEDEEVAALLSVRGLD---- 600

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                         +E +++  +E+G  
Sbjct: 601 ----------------------------------------------QEGYLVFATERGLV 614

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT+  ++   N    G+ A  + + +    LV V   +  D+ IL + +G  IR P+ E
Sbjct: 615 KRTALKEY--QNLGQAGLIAIRLQEGDR---LVGVALSDPEDEAILATQEGQAIRFPLEE 669

Query: 870 IRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +R   R T+GV+     K ++RVVS+  ++  E+VD
Sbjct: 670 VRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVD 705



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 99/300 (33%), Gaps = 89/300 (29%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD  DE+++         ++  ++     R  +      +   +  +  + L +  
Sbjct: 376 LLIALDHIDEVIA---------LIRGSEDAPKARIALMERFGLSEAQAQAILDMRLQR-- 424

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-------------SS 780
                 + L  +   +E    M+ ++  + ++  +   +  +K D             + 
Sbjct: 425 -----LVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDARRTL 479

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +         ++L   E  ++T++ +GF KR     +R   R GKG+ A    + +E   
Sbjct: 480 ITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEA-- 537

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNE----------------------------IRI 872
              VF  + +D ++L +++G + R+ V E                            + +
Sbjct: 538 -THVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSV 596

Query: 873 AS-----------------RAT---------KGVVIFSTAKDERVVSVERIRESEIVDEA 906
                              R            G++     + +R+V V     S+  DEA
Sbjct: 597 RGLDQEGYLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVAL---SDPEDEA 653


>gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
 gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
          Length = 867

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 549/902 (60%), Gaps = 90/902 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM
Sbjct: 1   MDEN----QTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSV
Sbjct: 57  RGIGNFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DD+ K+TVD   N+D + +EP V+  + PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+PTHNL EV+DGC A IDNP+I ++ LM+ I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE      ++IVVTEIPY VNKA ++E IA+LV+E ++  I+++ 
Sbjct: 237 YETGRGRIIMRAKAEIESDDT-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+ RQG R+V+++KR A+A++ILN+L++ T+LQS FSVN +AL   +P   +L   +K 
Sbjct: 296 DETGRQGMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVKGRPRLLSLQECVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRT++ L KA++RAH+L GL IA  N+DEVVRIIR S  P  A+  L +R
Sbjct: 356 FVEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L ++Q++AI+++RL++LTGL  +++  E + +
Sbjct: 416 --------------------------FDLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEI 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL++  R   ++K+EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 MQTIKDLQEILNNPERCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  + 
Sbjct: 510 TISHLGYIKRTPLADFKEQARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   A+G+A+ N+L+L+  + +   +      DE   ++ YVVFATK G V+
Sbjct: 570 MKCYDIPEGDKTAKGRAIQNMLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ ++  DE++ V      N++++  + G+  RF   A+R    
Sbjct: 630 KTSLRHYSRPRTNGVIAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTMG- 688

Query: 719 RNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R S GVRG+ L     D VI M +V   + +                             
Sbjct: 689 RVSTGVRGMRLDDDGEDGVIGMIVVNDTEKE----------------------------- 719

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  ++ VSE+G+GKR+   D+R++NR GKG++  ++++  
Sbjct: 720 ----------------------TVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITE-- 755

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
           + G LVA+  V D + +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV 
Sbjct: 756 KTGKLVAIKNVTDENDLMIINQSGIVIRLAVAECRVMGRATQGVRLINLAKKNDVIASVC 815

Query: 896 RI 897
           ++
Sbjct: 816 KV 817


>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
 gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
 gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
          Length = 841

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   + +   +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    + ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
          Length = 836

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   + +   +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    + ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
 gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
          Length = 826

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+V
Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+ +LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   + +   +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 DDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+ L+++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 EVVLEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
 gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
          Length = 821

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+V
Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+ +LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   + +   +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 DDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+ L+++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 EVVLEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/840 (44%), Positives = 524/840 (62%), Gaps = 34/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY++T++Q+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LMQ+         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G  + EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L L++ E I TI+P   D    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++S +       I++ TK G  +RFP + +R    R++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAMG-RSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+    D     +  Y K   A    I     +     N +   G I  
Sbjct: 694 LEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +       E+ ++ ++  G   R +  D     R+ +G++   +S  NE   +  V  V
Sbjct: 754 VKTV---TGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810


>gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 889

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/895 (38%), Positives = 514/895 (57%), Gaps = 95/895 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM++SYL+YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+P+   + L++    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + +V
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMD--------- 447

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L  +I +  
Sbjct: 448 -----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 668 RQGGLIAVRLMTDENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD++++M +V                                        
Sbjct: 728 AGVQGMKFREGDELLAMDVVWGD------------------------------------- 750

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 751 --------------SDKDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGSL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V    V ++DQ++ +   G +IR  V E++   R T+GV +    K++ ++S+ R
Sbjct: 795 VGAVIVEEDDQVMAIMKSGKVIRSNVAEVKRTGRNTQGVTLAKPDKNDEIISIAR 849


>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
 gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
          Length = 846

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/890 (39%), Positives = 548/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+V
Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN++ +   E+I T++   + +   +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIINLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R    R + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMG-RVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 DDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+ L+++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 EVVLEDEALLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
 gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
          Length = 880

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/855 (44%), Positives = 534/855 (62%), Gaps = 38/855 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  
Sbjct: 186 NLSEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQ+NKA ++EKIAELV++KRI  I+ LRDESD+ G R+VI
Sbjct: 246 AKIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A A+V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 306 EVKRDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFINHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L  LA+A+ N+D  + +IR +  P  A+  L+ ++W   ++  +++
Sbjct: 366 TIFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I
Sbjct: 426 QAGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL  +I++ELL++KD+ +  RRT + E   D+  ED I +ED+VVT+SH
Sbjct: 486 GELLFILENPERLREVIREELLAIKDQYNDARRTELTENSADINIEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKGKMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ ++N+L L Q ERIT I+P  E E   N   +  AT  G V++ KLS+
Sbjct: 606 QLPEASRGARGRPIVNLLPLEQEERITAILPVREYEDGLN---IFMATASGTVKKTKLSE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-------- 716
           F +   +G IA+KL   DE++ V+     N+++L +  G+ VRF                
Sbjct: 663 FSRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVK 722

Query: 717 ----AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLIS 766
                GR + GVRGI L+ GD+V+S+ I      +L    +   +         + R   
Sbjct: 723 GVRAMGRTAAGVRGIKLSAGDKVVSLIIPRGEGEILTVTENGYGKRTAQSEYPTKSRATQ 782

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G      S +N   +     E   Q        I+ +++ G   RT   +  +  R+ +G
Sbjct: 783 GVISIKVSERNGDVIGAIQVETTDQ--------IMMITDAGTLVRTRVSEVSVVGRNTQG 834

Query: 827 IRATDVSKINEIGAL 841
           +     ++  ++  L
Sbjct: 835 VTLIRTTEDEKVVGL 849



 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 157/431 (36%), Gaps = 50/431 (11%)

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN---LD 398
             ++  K    T            +++     + LL++ R+   ++  L   + N   L 
Sbjct: 441 YGIHDGKY-YLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLIGELLFILENPERLR 499

Query: 399 EVVR--IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           EV+R  ++        ARR  +  +    +I+DLI+  D     + +       + Q  +
Sbjct: 500 EVIREELLAIKDQYNDARRTELTENSADINIEDLINQED----VVVTLSHQGYVKYQPLS 555

Query: 457 ILELRLARLTGLGRDDIRNE-LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
             E +     G     I+ E      +       IL   ++      +    + +     
Sbjct: 556 DYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKGKMYWMKVYQ-LPEASRGA 614

Query: 516 RRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           R   IV        E +  +           +   +  G VK+  LS +   R    G  
Sbjct: 615 RGRPIVNLLPLEQEERITAILPVREYEDGLNIFMATASGTVKKTKLSEFSRPRSA--GII 672

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-------------EKVWRLPIGSPQAR 614
            V + D D +  + +      V+ FS+ G V +              +V  +      A 
Sbjct: 673 AVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVKGVRAMGRTAA 732

Query: 615 GKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
           G   +  + L+ G+++ + I+P  E E       ++  T++G  +R   S++   +R+  
Sbjct: 733 G---VRGIKLSAGDKVVSLIIPRGEGE-------ILTVTENGYGKRTAQSEYPTKSRATQ 782

Query: 672 GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G I++K+     +++        + I++ T  G  VR  +S + V   RN+ GV  I   
Sbjct: 783 GVISIKVSERNGDVIGAIQVETTDQIMMITDAGTLVRTRVSEVSVVG-RNTQGVTLIRTT 841

Query: 731 KGDQVISMAIV 741
           + ++V+ +  V
Sbjct: 842 EDEKVVGLQRV 852


>gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
 gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
          Length = 846

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/896 (43%), Positives = 555/896 (61%), Gaps = 68/896 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G  WNK Y K
Sbjct: 6   KEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQ + +R +LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K ++ LL DL K+TVD+  NYDG+ + P VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A IDN +I +D LM+ I GPDFP+ AVI   + +K AY TG+G I IR  
Sbjct: 186 NLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSELKKAYETGKGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I       RE I+V EIPYQVNK+ +LEKIAELV+ KRI  I  LRDESD+ G RVVI
Sbjct: 246 AEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ++K  A ++++LN LY  T LQ  F +NMVAL+  +P+  +L  IL AF+  R  V+ RR
Sbjct: 306 DIKHDAISEIVLNNLYSLTQLQVSFGINMVALHHGQPKVMSLKDILSAFICHRRSVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L KA +R HVL GL IA++N+D V+ +IR S +   A   L  +SW A+D+ ++  
Sbjct: 366 ILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNMRK 425

Query: 433 LIDD--------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            I                 +   Y ++ Q RAIL+LRL +LT L  D +  E +SL  ++
Sbjct: 426 SISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLKKM 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           ++ +  L ++S L+ +I+QEL+S+K+E    RRT I   +  ++ E+ I + D+VVT+S+
Sbjct: 486 EKLIFTLKNKSSLMDVIRQELVSIKEEYSDIRRTEINNTIPSIDVENLINQRDVVVTLSY 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y  KV+
Sbjct: 546 QGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           RLP     +RG+ +IN+L L+  ERITTI+P    +       V  AT  G V++  L +
Sbjct: 606 RLPEVKRSSRGRPIINLLPLDVNERITTILPI---QKYTKGHQVFMATSSGFVKKTALME 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G IA+ L+  DE++  +     N+++L T  G+ VRF  + +R    R++VGV
Sbjct: 663 FSRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSMG-RSAVGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +GI L +GD+V+S+ I                                            
Sbjct: 722 KGIHLLQGDRVVSLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILT+++ GFGKRT   ++ + +RS KG+ +  V++ N  G +V  
Sbjct: 738 ---------PKNKSSILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERN--GNVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V+ +DQI++++D G L+R+ V+E+ I  R TKGV++  TA DE VV ++R+ ES
Sbjct: 787 VQVSHDDQIMIITDAGRLVRIRVSEVNIIKRNTKGVMLIRTACDEHVVGLQRVVES 842


>gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
 gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
          Length = 863

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/902 (39%), Positives = 540/902 (59%), Gaps = 90/902 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM
Sbjct: 1   MDEN----QTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   N+ Y KCAR+ GEV+GK+HPHG++++Y AL RM Q+W++R  L++GQGNFGSV
Sbjct: 57  RGIGNFSNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DD+ KDTVD   N+D +  EP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+DGC A IDNP+I  + LM+ I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE      ++IVVTEIPY VNKA ++E IA+LV+E R+  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIEAGD-SHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+ RQG R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P    L   +K 
Sbjct: 296 DETGRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLNLRECIKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R
Sbjct: 356 FVEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RLA+LTGL  D +  E   L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK   +IL +  R   ++K+EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 MQTIKSLQEILDNPERCKEVMKEELNEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TISHLGYIKRTPLTDFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+LSL  G+ +   +     ++E   +  YVVF TK G V+
Sbjct: 570 MKCYDIPEGDKNSKGRAIQNMLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ ++  DE++ V      +++++  + G+  RF    +R    
Sbjct: 630 KTSLRAYSRPRTNGVIAININESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTMG- 688

Query: 719 RNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R S GVRG+ L     D+VI M +V  A+                               
Sbjct: 689 RVSTGVRGMKLDDDCEDEVIGMVVVNDAE------------------------------- 717

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  
Sbjct: 718 --------------------NETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITE-- 755

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
           + G LVA+  V D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV 
Sbjct: 756 KTGKLVAIKTVTDDNDLMIINKSGIVIRMAVAKCRVMGRATQGVRLINLSKKNDTIASVC 815

Query: 896 RI 897
           ++
Sbjct: 816 KV 817



 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 16/265 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D +  + +  VV V+  G VK+  L  Y   R    G   + + + D V D+ + + +  
Sbjct: 609 DNEEFLDKHYVVFVTKKGLVKKTSLRAYSRPR--TNGVIAININESDEVVDVRLTNGNDE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNL 646
           ++  +  G   +     +      + G   +  + L+    + +  ++   + E    N 
Sbjct: 667 LIIANRNGRACRFHEKHVRTMGRVSTG---VRGMKLDDDCEDEVIGMVVVNDAE----NE 719

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703
            V+  ++ G  +R+ + D+   NR GK    L+      ++++++T T +ND+++  K G
Sbjct: 720 TVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITEKTGKLVAIKTVTDDNDLMIINKSG 779

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
             +R  ++  RV   R + GVR I+L  K D + S+  V+ A+ +               
Sbjct: 780 IVIRMAVAKCRVMG-RATQGVRLINLSKKNDTIASVCKVMSAEMEERIEEESKADWEKTN 838

Query: 763 RLISGDTEEITSLKNDSSVEGNISE 787
           + I  DT  I +      V  N +E
Sbjct: 839 QQIKNDTSSIDTKLEAEGVNTNETE 863


>gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
 gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
          Length = 875

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/854 (44%), Positives = 547/854 (64%), Gaps = 28/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   ++DEDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R     N+ GV
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMG-CNTTGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI L +GD+V+S+ +      +L A  +   +   ++    + R   G    I   + +
Sbjct: 722 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVEEYPTKSRATKGVIS-IKVTERN 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK-INE 837
             V G +  + C +       I+ +++ G   RT   +  I  R+ +G+     ++  N 
Sbjct: 781 GLVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEGENV 833

Query: 838 IGALVAVFPVNDND 851
           +G      PV+D D
Sbjct: 834 VGLQRVAEPVDDED 847



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + +
Sbjct: 628 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVE 678

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 679 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 733

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  + ++   +R+ K  + +   +    ++   
Sbjct: 734 SLIVPRGDGA------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTERNGLVVGAV 787

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+G+ V+ +  V     D 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEGENVVGLQRVAEPVDDE 846

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 847 DLDAIDGSAAEGDDEIAPEVDVDDEPEEE 875


>gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
 gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
          Length = 826

 Score =  754 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 513/906 (56%), Gaps = 92/906 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE   +S       I  V +  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTEPTDTSPP--RDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG++AIYDAL RMAQ WSLR  LI+GQGNFGS 
Sbjct: 59  QDQGFRPDRGYVKSARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  ++ D+  +TVDF PNYDG  +EP VL AR PN+LVNG G
Sbjct: 119 GNDGAAAMRYTEARLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D     +++ D      L+A+ EI++GPDFPT  +I+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIVGTDG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ SG R  +V+TE+PYQVN   M+  IAE VR+ +I  I
Sbjct: 239 IADAYTTGRGSIRMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+A+    P    L 
Sbjct: 299 AQIDDESSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +VA + EV+VRRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S + + AR 
Sbjct: 359 QIIRLYVAHQIEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARV 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q RAIL ++L RL  L R  I +
Sbjct: 419 GLME--------------------------LLDVDEIQARAILAMQLGRLAALERQKIFD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I +
Sbjct: 453 ELAEIEEEIADYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQ 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITETGYAKRTKTELYRSQKRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTTR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+L   E+I  ++     E   +  Y+V ATK G
Sbjct: 573 GRVYRIKAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYE---DAPYLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++++L++F      G +A+ L   DE++    C+ ++D+LL ++ GQ +RF  +  ++
Sbjct: 630 LTKKSRLTEFDSNRSGGIVAVNLKDDDELVGAALCSADDDLLLVSEHGQSIRFHANDEQL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV G+   + DQ+++M +V                                 
Sbjct: 690 RPMGRATSGVLGMRFNEDDQLLAMNVVRDG------------------------------ 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT   ++    R GKG+      +
Sbjct: 720 -----------------------AYLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYDR 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ +R+++V
Sbjct: 757 R--RGGLVGAVIVDDDTELYAITSGGGVIRTAARQVRRAGRQTKGVRLMNLAEGDRLIAV 814

Query: 895 ERIRES 900
            R  E 
Sbjct: 815 ARNDED 820



 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 92/235 (39%), Gaps = 13/235 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
           +  E +  +           +V  +  G  K+  L+ + + R G  G   V ++D+D + 
Sbjct: 602 QTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTEFDSNRSG--GIVAVNLKDDDELV 659

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              + S    +L  S  G   +          P  R  + +  +  N+ +++  +     
Sbjct: 660 GAALCSADDDLLLVSEHGQSIRFHAND-EQLRPMGRATSGVLGMRFNEDDQLLAMNVVR- 717

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQEND 695
                +  Y++ AT  G  +R  L ++    R GK  + +        ++       + +
Sbjct: 718 -----DGAYLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTE 772

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +   T  G  +R     +R  AGR + GVR ++LA+GD++I++A      A   E
Sbjct: 773 LYAITSGGGVIRTAARQVR-RAGRQTKGVRLMNLAEGDRLIAVARNDEDSAGSGE 826


>gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
          Length = 831

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/890 (39%), Positives = 547/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   + +   +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R    R + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMG-RVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 ADKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 DVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
 gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
          Length = 815

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/898 (41%), Positives = 554/898 (61%), Gaps = 85/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTG+ +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+IV+TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+ +         
Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++RL RLTGL RD I  E + L   I +  D
Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K ELL VK++    RR+ I+EG +D +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +       ++F+TK+G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQE--EGTSLIFSTKYGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R    R S GV+GI+
Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMG-RVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V  +                                            
Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + EI +E 
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEEE 815


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/901 (43%), Positives = 551/901 (61%), Gaps = 51/901 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ R+AQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+ID P + ++ LME I GPDFPT A I GR GI +AY TGRG  V+R  
Sbjct: 186 NLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRAVMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  + I +E   L I I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V ++    RRT I E  +DM  ED I  ED+VVT+SH 
Sbjct: 486 GLLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVVTLSHT 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E     ++ +++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---DDKFIIMATAHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV---------- 715
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF   A             
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAE 722

Query: 716 ---------FAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSA 760
                      GR + GVRGI L  G +V+S+ +      +L    +   +   +    A
Sbjct: 723 TGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIVPKGDGAILTVTENGYGKRTELNEYPA 782

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           + R   G      + +N + V      E  +        I+ +S+KG   RT +    I 
Sbjct: 783 KSRGTKGVVSIKVTERNGAVVGAVQVGEFDE--------IMLISDKGTLVRTPAEGVSII 834

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR----VPVNEIRIASRA 876
            R+ +G+     ++  ++  L  +  +  ++   ++   G +I     V  +E+   +RA
Sbjct: 835 GRNTQGVTIIRTAEDEKVVGLQRIEEIQTDE---ILDADGNVIVPAESVDGDELSTDTRA 891

Query: 877 T 877
           T
Sbjct: 892 T 892


>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
 gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
          Length = 861

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/892 (39%), Positives = 549/892 (61%), Gaps = 86/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   + +   +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R    R + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMG-RVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 TDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 DVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I+
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 856

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/892 (39%), Positives = 549/892 (61%), Gaps = 86/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   + +   +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R    R + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMG-RVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 TDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 DVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I+
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
          Length = 878

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/913 (40%), Positives = 547/913 (59%), Gaps = 98/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSV
Sbjct: 57  LGLGNTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTECRL K    ++DD+ KDTVD   N+D +  EP V+  R PN+LVNGG 
Sbjct: 117 DGDSPAAMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNP+ID + LM+ I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIYGIQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE +    ++IVVTEIPY VNK  ++E IAELV+E +I  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIE-SDESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-------KPERFT 353
           DE+ RQG R+V+++KR A+A VILN+L++ T+LQS FSVN +AL          +P+  +
Sbjct: 296 DETGRQGMRIVVDVKRDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLS 355

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   +  F+  R EV +RRTK+ L KA++RAH+L GL IA  N+DEVV IIR S  P  A
Sbjct: 356 LRECISYFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEA 415

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +  L +R                            L  +Q++AI+++RL++LTGL  D +
Sbjct: 416 QANLEKR--------------------------FELDNLQSKAIVDMRLSQLTGLRMDQL 449

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   L   I E   +L    +   ++K EL +VK +    RRTRI+    +   ED  
Sbjct: 450 HAEYEDLMKLIDELQSVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFNAEDFY 509

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVSHLGY+KR PLS +R Q RGG G  G   RD+DF   ++  + H +++FF+
Sbjct: 510 PNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFT 569

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVV 649
             G  Y    + +P G   ++G+A+ N+L+++  + +   +       EDE   N+ YVV
Sbjct: 570 KKGRCYWLHCYDIPEGDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVV 629

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           FATK+G V++  L ++ +   +G IA+ +   DE++ V      N+++L  + G+ VRF 
Sbjct: 630 FATKNGTVKKTNLKEYSRPRANGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFD 689

Query: 710 ISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             AIR    R S GVRG+ +  +GD V+ M +V +A+ +                     
Sbjct: 690 EQAIRSMG-RVSTGVRGMRIDDEGDAVVGMIVVNNAETE--------------------- 727

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          ++ VSE+G+GKR+   D+R +NR GKG++
Sbjct: 728 ------------------------------TVMVVSEEGYGKRSDVADYRKTNRGGKGVK 757

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-K 887
              +++  + G LVA+  V D + +++++  G +IR+ V E+R+  RAT+GV + + A K
Sbjct: 758 TMSITE--KTGRLVAIKNVTDENDLMIINKSGIVIRLAVAEVRVMGRATQGVRLINLARK 815

Query: 888 DERVVSVERIRES 900
           ++ + SV ++  S
Sbjct: 816 NDTIASVCKVMSS 828



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 113/264 (42%), Gaps = 13/264 (4%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +++  V    VV  +  G VK+  L  Y   R    G   + + + D V D+ + + +  
Sbjct: 618 EDEEFVNSHYVVFATKNGTVKKTNLKEYSRPR--ANGVIAINIVEGDEVVDVRLTNGNNE 675

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     +      + G  +  +   ++G+ +  ++     E+      V
Sbjct: 676 LILANRNGRAVRFDEQAIRSMGRVSTG--VRGMRIDDEGDAVVGMIVVNNAETE----TV 729

Query: 649 VFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +  ++ G  +R+ ++D+ + NR GK        +    +++++  T END+++  K G  
Sbjct: 730 MVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITEKTGRLVAIKNVTDENDLMIINKSGIV 789

Query: 706 VRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +R  ++ +RV   R + GVR I+LA K D + S+  V+ ++    E     +  S   ++
Sbjct: 790 IRLAVAEVRVMG-RATQGVRLINLARKNDTIASVCKVMSSELAAAEEEEKQEAESDGAQV 848

Query: 765 ISGDTEEITSLKNDSSVEGNISEE 788
              D     S ++  +      +E
Sbjct: 849 DLSDNASEASSESRDADSSAGDDE 872


>gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 829

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/903 (40%), Positives = 542/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 2   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 411 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT  +V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAA---KYLFFTTRNGIVKRTSTSQFSNIRT 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R    R + GV+G++L 
Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDMG-RAAAGVKGVNLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +                                                 
Sbjct: 692 EGDFVVGTSRIDD----------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 705 ------NQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +    E E  D  E
Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 816

Query: 908 STE 910
            T+
Sbjct: 817 VTD 819


>gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16]
 gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16]
          Length = 888

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/866 (40%), Positives = 535/866 (61%), Gaps = 28/866 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF  NYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W+++ ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSALVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  + + +DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAEGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +   I + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYRDIMAVITDLLDILARPERITAIIVDELTAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L++GE+I  I+P  + ++     ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFDAE---HFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R + GVRG++L  G  VI+M +     A+  E       ++A        T    
Sbjct: 719 RPMG-RQARGVRGMNLEDGQTVIAMLVAPAETAEEAEAGMRGSVLTATENGYGKRTPIAE 777

Query: 774 SLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             ++    +G I+ +  +         L   E  I+ ++  G   RT   + R   R+ +
Sbjct: 778 YTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQ 837

Query: 826 GIRATDVSKINEIGALVAVFPVNDND 851
           G+   +V +  ++  L  +   + ++
Sbjct: 838 GVTLINVDEGTKLSGLQRIVESDADN 863


>gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 836

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/903 (40%), Positives = 542/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT  +V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAA---KYLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R    R + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDMG-RAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +                                                 
Sbjct: 699 EGDFVVGTSRIDD----------------------------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 712 ------NQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +    E E  D  E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 823

Query: 908 STE 910
            T+
Sbjct: 824 VTD 826


>gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
 gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
          Length = 832

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/908 (39%), Positives = 540/908 (59%), Gaps = 91/908 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     I  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M ++    +
Sbjct: 2   DENIFDRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ WS R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++    +IDN      D D+D +++I++GPDFPTGA ILGR GI+ AY T
Sbjct: 182 NIPPHNLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHILGRAGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I++R V+ IE  +  + +IVVTE+PY VNKA ++E IA++V+ KRI  I +LRDES
Sbjct: 242 GRGKIIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R G R+ IEL+R  +  +IL +LY++T LQ+ F  NM+ L   +P    L  +L  ++ 
Sbjct: 302 NRNGMRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLVNNEPVVMNLKQMLGFYLE 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E VV RR++Y LNKA +RAH+L GL +A+  +DEV+ IIR S     A+ +L+ R   
Sbjct: 362 HQENVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLIGR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L +VQ +AI+++RL  LTGL R+ ++ E +SL   
Sbjct: 419 -----------------------FSLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQER 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IKE  +IL    +LLG+IK+E+  ++D+    RR++IV    D+ ++D I  E+ V+ ++
Sbjct: 456 IKELKEILGDIKKLLGVIKEEINVIRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           ++GY+KR+    +++Q RGGKG  G+   +EDF+ DL + +TH  +LFF++ G VY+ K 
Sbjct: 516 NMGYIKRMTTDNFKSQNRGGKGIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P  S  ARG A++N+L L   E++  ++   ++++   + Y+  ATK G V++  LS
Sbjct: 576 YQIPEASRTARGTAMVNLLQLQPDEQVKAVINIRKEKT---DGYLFMATKRGIVKKTALS 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I ++G  A+ L   D+++ V+    ENDI L TK G C+RF    +R   GR S+G
Sbjct: 633 EYANIRKTGLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRFNEKDVRP-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+++   D++++M +                                           
Sbjct: 692 VIGMTIDDTDEIVAMQL------------------------------------------- 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +   +L VSE G GKRT   +F   +R GKG++   + +  + G ++ 
Sbjct: 709 ----------DTQGAKLLIVSENGLGKRTEISEFTTQHRGGKGVKCYKIVE--KTGLVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-I 902
              VNDN++I+L++  G +IR+ V  I    R T GV + +   D  +  + ++RE +  
Sbjct: 757 AKSVNDNNEIMLITKAGIIIRMAVESISTLGRITSGVKLMNVDGDNVIAKIAKVREDDKA 816

Query: 903 VDEAESTE 910
             E E+TE
Sbjct: 817 AAEEETTE 824


>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
 gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
 gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
          Length = 945

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/900 (40%), Positives = 548/900 (60%), Gaps = 90/900 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +   + + K A
Sbjct: 97  LKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSA 156

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG+++IYDA+ RMAQ++S+RL L++G GNFGS+DGDPPAA RYTE RL
Sbjct: 157 WTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRL 216

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG  GIAVGMATN+P HNL
Sbjct: 217 THAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNL 276

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV      +IDNPD  ++ LM+++ GPDFPTG +I+G  GI++AY TGRGSI IR   H
Sbjct: 277 AEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGTDGIRDAYTTGRGSITIRSKVH 336

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E    G R+++V+TEIPYQVNK  + E+IA+ V EKRI  I+D+RDES+R+G R+VI+L
Sbjct: 337 VENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVIDL 396

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K GA   V+LN LY+ T LQ  F V  +AL    P   TL  ++  ++  ++++V RRT+
Sbjct: 397 KSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDGVPRTLTLREMIYYYIEHQKDIVTRRTQ 456

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  R H+L GL IAV N+DEVV IIR S + + A++ + +R              
Sbjct: 457 FDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNER-------------- 502

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         + ++Q  AIL++RL RLTGL R+++  ++  L   I+   D+L+  
Sbjct: 503 ------------FGIDDIQGEAILQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHP 550

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +LL +IK+EL  +       RRT+I   G+ +++ ED I  EDMV+TV+H  Y+KR+P+
Sbjct: 551 QKLLEVIKEELTEISTRFSDKRRTQISALGVQNLDIEDLIAEEDMVITVTHASYIKRLPV 610

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q+RGGKG  G+ ++D DFV ++F+ STH  VLFF++ G VY+ KV  LP+GS  A
Sbjct: 611 ATYKSQKRGGKGVQGLSLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHA 670

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG ALIN+L L++GE  T ++   +  +     +++FATK G V++  +SD+ +  R G 
Sbjct: 671 RGSALINVLPLSEGEYPTAVITTRDFPAEE---HLMFATKSGMVKKTAMSDYDKSRRDGL 727

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+++V    +   ++L +  G+ + F  S IR   GR + GVRGI+L  G 
Sbjct: 728 IAINLKDGDELVNVRRVKESEYVILCSSAGKAIMFEESDIRP-TGRGTSGVRGITLKDGA 786

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++ M                                                     E+
Sbjct: 787 TMLGM-----------------------------------------------------EI 793

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  +L V+E G+GKRT   ++ +  R G G+    +++  + G L A   V    ++
Sbjct: 794 SNGKGDLLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIAMTQ--KKGKLSACRVVGPQHEL 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910
           ++VS++G +IRV   +I + SRAT+GV I + A+ + V ++ R+   ++ +  ++ +S +
Sbjct: 852 MIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALARMHIHKKKDTNEQPDSNQ 911



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 18/265 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E    +        E+ ++  +  G VK+  +S Y   RR   G   + ++D D + ++ 
Sbjct: 685 EYPTAVITTRDFPAEEHLMFATKSGMVKKTAMSDYDKSRR--DGLIAINLKDGDELVNVR 742

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V     V+  SS G       +      P  RG + +  ++L  G  +  +      E 
Sbjct: 743 RVKESEYVILCSSAGKAIM---FEESDIRPTGRGTSGVRGITLKDGATMLGM------EI 793

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDIL 697
           S     ++  T+HG  +R  +S++    R G     IAM      ++ +      +++++
Sbjct: 794 SNGKGDLLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIAMTQKKG-KLSACRVVGPQHELM 852

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMK 756
           + ++ G  +R     I + + R + GV+ ++LA+ D V ++A + +H   D +E+    +
Sbjct: 853 IVSEEGVMIRVQSQDISLLS-RATQGVKIMNLAESDSVSALARMHIHKKKDTNEQPDSNQ 911

Query: 757 HMSAQRRLISGDTEEITSLKNDSSV 781
                  L     EE  ++ +D  +
Sbjct: 912 PQLPLDFLSQKHQEEEINIGDDEQI 936


>gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
 gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
          Length = 828

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNF S+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR    R++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIRDN---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  ++   N  G L  +  V+  
Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANIIPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   +F    ++G  +RA  + + ++   L+ V   +  D II+ +  G  +R     IR
Sbjct: 623 TEVSEFNNIRQNG--LRALKLKEGDQ---LINVLLTSGQDDIIIGTHSGYSVRFNEASIR 677

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R+  GV      +D+RVV   RIR+++ V
Sbjct: 678 NMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 89/211 (42%), Gaps = 15/211 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+   G   + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQ--NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + +R+       +++       V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATG---VRGVKLREDDRVVGASRIRDNQE------VLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A  +    ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANIIPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQ-TGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++GV+ + L    ++++  +V   D+   E
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAE 813


>gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
 gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
          Length = 836

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/903 (40%), Positives = 543/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT  +V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAA---KYLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R    R + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDMG-RAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +  +                                              
Sbjct: 699 EGDFVVGTSRIDDS---------------------------------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +    E E  D  E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 823

Query: 908 STE 910
            T+
Sbjct: 824 VTD 826


>gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
          Length = 840

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/892 (40%), Positives = 553/892 (61%), Gaps = 87/892 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYTE RL+K    ++ 
Sbjct: 61  YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+PTHNL EV+D C+A
Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R  + IE T    +
Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMRAKAEIE-THTTHD 239

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+VI++KR A+A V+L
Sbjct: 240 KIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVVL 299

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+RRT+Y L KA++RA
Sbjct: 300 NKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQERA 359

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA  N+DEV+RIIR +  P  A   L++R                        
Sbjct: 360 HILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER------------------------ 395

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +ILS+      +IK E
Sbjct: 396 --FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDE 453

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR PLS +RAQ RGG 
Sbjct: 454 LVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGV 513

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+  A+G+A+ N+L++
Sbjct: 514 GSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNI 573

Query: 625 NQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +  + +T  +      D    N+ YV+F TK+G +++  L  + +  ++G  A+ +   D
Sbjct: 574 DSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 633

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAI 740
           +++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L +  GD+VI M  
Sbjct: 634 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTLDEDGGDEVIGMIC 692

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +   +A+                                                    I
Sbjct: 693 IKDPEAES---------------------------------------------------I 701

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V D + +++++  G
Sbjct: 702 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSVTDENDLMIINKSG 759

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDEAESTE 910
             IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE  +T+
Sbjct: 760 ITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTD 811



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 115/255 (45%), Gaps = 13/255 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++  
Sbjct: 593 FINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDKVIEVRMTNGDNEIIIA 650

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     + +    A G      L  + G+ +  ++   + E+      ++  +
Sbjct: 651 NRNGRAIRFHESAVRVMGRTATGVR-GMTLDEDGGDEVIGMICIKDPEAES----IMVVS 705

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+ + NR GK    L+  D+   ++++++ T END+++  K G  +R  
Sbjct: 706 EQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLK 765

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMA--IVLHADADYDERICYMKHMSAQRRLISG 767
           ++ +R+   R + GVR I+L K +  I     +    +   +     +++++      + 
Sbjct: 766 VAEVRIMG-RATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTT 824

Query: 768 DTEEITSLKNDSSVE 782
           +++  + L  +++ E
Sbjct: 825 NSDTNSDLTAEANSE 839


>gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 856

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/899 (38%), Positives = 516/899 (57%), Gaps = 91/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  + I +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G    + YVK
Sbjct: 10  DKIHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   + MG +HPHG++AIYDAL R+AQ W++R  +++GQGNFGS   D PAA RYTEC
Sbjct: 70  SARPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSPGNDGPAAMRYTEC 129

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GGIAVGMATNIP H
Sbjct: 130 RMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSGGIAVGMATNIPPH 189

Query: 194 NLGEVVDGCVAV----IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL E+ D    +      + +  L+A M+ ++GPDFPT  +I+G +GIK+AY TGRGSI 
Sbjct: 190 NLKELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYGLIVGDSGIKDAYTTGRGSIR 249

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RGV+ IE   G R+ IV+TE+PYQVN   ++  IAE V   +I  I+ + DE SDR G 
Sbjct: 250 MRGVTSIE-EQGSRQTIVITELPYQVNPDNLVTNIAESVANGKIAGISKIEDESSDRVGM 308

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY+++ LQ+ F  NM+++    P    +  +L+ +VA + EV
Sbjct: 309 RIVITLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRIDQMLRYYVAHQIEV 368

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT+Y L++A  RAHVL GL  A+  LDEV+ +IR SP  + AR  LM          
Sbjct: 369 IVRRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEAREGLMS--------- 419

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + +  +Q  AIL ++L RL  L R  I +EL  + +EI +  
Sbjct: 420 -----------------LLDVDTIQADAILAMQLRRLAALERQKIVDELAEIELEIADYK 462

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  + D+    RRT+IV    D+ DED I RE++VVT++  GY 
Sbjct: 463 DILAKPERQRAIVHDELQEIVDKYGDERRTQIVAATGDVTDEDLIARENVVVTITSTGYA 522

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y+AQ+RGGKG  G  ++ +D V + FI STH  +LFF++ G VY+ K + LP 
Sbjct: 523 KRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNFGRVYRLKAYELPE 582

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ + N+L     E+I  ++     +S  +  Y+V ATK G V++++L+D+   
Sbjct: 583 ASRTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATKQGRVKKSRLTDYESA 639

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
             +G IA+ L+  D ++  E  +  +DILLT++ GQ +RF     ++   GR + GV+G+
Sbjct: 640 RSAGLIAINLNEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGM 699

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                DQ++S+++V                                              
Sbjct: 700 RFRDDDQLLSLSVVQEGG------------------------------------------ 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      ++L  +  G+GKRT+  ++    R G G+     +   + G L+    V
Sbjct: 718 -----------YLLVATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTP--KRGKLIGAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++D+I  ++  G +IR  VNEIR +SRAT GV + + + D  ++ ++R  E +  +EA
Sbjct: 765 MEDDEIFAITSVGGVIRTEVNEIRPSSRATMGVRLVNLSDDVELLVIDRNVEDDGEEEA 823


>gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 846

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/890 (39%), Positives = 547/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNN----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   + +   +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKDID---DMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R    R + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMG-RVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM                                                     
Sbjct: 692 TDKAVSM----------------------------------------------------- 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++ ++++ +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 699 DVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1]
 gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae]
 gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1]
          Length = 869

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/860 (43%), Positives = 535/860 (62%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L  G QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271]
 gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271]
          Length = 826

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 537/900 (59%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  +SI +EM+ +YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K Y
Sbjct: 2   QRDKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++A+YD+L RM QD+SLR  LI+GQGNFGS+DGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVV G +A+I+NP+I +D +ME I  PDFPTG +I G  G+K AY TGRG +VIR
Sbjct: 182 PQNLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIYGYEGVKQAYRTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE IVVTE+PYQVNK  ++EKI +LV +K+I  IAD+RDESDR G R+
Sbjct: 242 ARAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V ++AL    P+  T+  +++A++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLTIKEMMEAYILHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L+ A  +AH+L GL I + NLDEV+  IR SPN   A+  LM+R          
Sbjct: 362 RRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ++AILE+RL RLTG+ R  I N+       I+E   I
Sbjct: 412 ----------------FALTEVQSKAILEMRLQRLTGMERSKIDNDYKETLAHIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R + IIK+ELL VK      RRT IV    +   ED I +ED+V+TV+H G++KR
Sbjct: 456 LANPERQMEIIKEELLRVKAVFGDERRTEIVPQEGEFSIEDMIAQEDVVITVTHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DFV  +FI STH  +LFF+S+G  +  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L +GE I   +     ++  + L++V AT  G +++ ++  F +  R
Sbjct: 576 RTARGRSLANIMELQKGETIRAYINV---KTFDDPLFIVMATARGLIKKTEIEAFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       E+DI++    G  VRF    +R    R ++GV+GI+L 
Sbjct: 633 NGIAAISIEDGDELIEARLTDGEHDIIMAKNSGYAVRFAERDVRAMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             +  ISM     +D                                             
Sbjct: 692 DDEYCISMVTSKRSDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  ++G LV +  VND 
Sbjct: 709 ---------LLAVTDNGFGKRSLVDDYRLTRRGARGVITLKAHE--KVGNLVGLLDVNDG 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D +I+++  G + R  V+ IR+  R T GV +    + +++ +  R+ +++  D  +  E
Sbjct: 758 DDLIIITANGIVNRQHVSNIRLTGRNTSGVRLIRLMQGDKISATARVPKTDDPDVIDGPE 817


>gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
 gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
          Length = 809

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/892 (41%), Positives = 554/892 (62%), Gaps = 85/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIIDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LD+V+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPDRVITIIKEEMDEIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQRRGG+G  G  + D+DFV +L   +TH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+    ++ + N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN--YLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     ++DI++ TK G  VRF  S++R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKESDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G                                                      E   
Sbjct: 693 EG-----------------------------------------------------DEVVG 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++    R GKGI+  +++K N  G L  +  VN +
Sbjct: 700 ASRITNDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKN--GKLAGLVTVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + I++++D G +IR  V +I    RAT GV I    ++ +++++  ++  E 
Sbjct: 758 EDIMVITDTGVMIRTNVADISQTGRATLGVKIMRLDENAKIMTLALVQAEEE 809



 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/540 (14%), Positives = 176/540 (32%), Gaps = 77/540 (14%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT+    K+     V+      V        I+R +          ++   +   ++ 
Sbjct: 241 RSRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRF 300

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +I++  D+S  +  +    L+ +QT     + LA   G+    I +    +   I+   +
Sbjct: 301 IIEVRRDASANVILNNLFKLTSLQTNFSFNM-LAIENGVP--KILSLKQIIIDYIEHQKE 357

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT----VSHL 545
           ++  R+       ++   + + L       I    LD         E  V+     +S  
Sbjct: 358 VIVRRTEFDKAKAEKRAHILEGL------LIALDHLDDVISIIRNSETDVIAQSELMSRF 411

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
              +R   ++   + R   G     ++ E       I          +    V       
Sbjct: 412 NLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIA---DLADILAKPDRVITIIKEE 468

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +     +           L  GE    ++   +++       ++  +  G ++R    +F
Sbjct: 469 MDEIKRKYVD---PRRTELMVGE----VLSIEDEDLIEEEDVLITLSNKGYIKRLAQDEF 521

Query: 666 IQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               R   G     ++  D +  + +    + +   T  G+  R     I  +  R + G
Sbjct: 522 RAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYG-RTAKG 580

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +  ++L K D+  ++  ++    + +                                  
Sbjct: 581 LPIVNLLKLDEGETVQTIISEKGNDET--------------------------------- 607

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E ++  V+ +G  KRT   +F    ++G  ++A ++ + +E   L+ 
Sbjct: 608 -------------ENYLFFVTRQGVVKRTKESEFSNIRQNG--LKALNLKESDE---LIN 649

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V   N +D II+ +  G  +R   + +R  SR+  GV   +  + + VV   RI   + V
Sbjct: 650 VIRTNGDDDIIIGTKTGYSVRFNESSVRSMSRSATGVRGVNLREGDEVVGASRITNDQEV 709



 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 55/262 (20%), Positives = 107/262 (40%), Gaps = 22/262 (8%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   L + D +  V +  + ++  +  +     RF +S     
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSRFNLSE---- 415

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R S  +  + L +   +    I    D            ++   R+I+   EE+  +K
Sbjct: 416 --RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMDEIK 473

Query: 777 ND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                      + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ 
Sbjct: 474 RKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQG 533

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886
           T V+  + +  LV+    N +D +  +++KG + R+   EI    R  KG   V +    
Sbjct: 534 TGVNDDDFVRELVST---NTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLD 590

Query: 887 KDERVVSVERIRESEIVDEAES 908
           + E V   + I   +  DE E+
Sbjct: 591 EGETV---QTIISEKGNDETEN 609


>gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
 gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
          Length = 840

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/906 (41%), Positives = 553/906 (61%), Gaps = 91/906 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+  NK + K
Sbjct: 5   EQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K +  +L D+ K+TVDF  N+D + +EP VL  R PN+LVNG  GIAVGMATN+  H
Sbjct: 125 RMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++G  A I+N DI+++ LM  I+ PDFPTG +I G  G+++A+ TGRG +V+R  
Sbjct: 185 NLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGGIIYGYEGVRDAFMTGRGRVVMRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           S +E+    RE I++TEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V  
Sbjct: 245 SSVEEV-NGRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVYI 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +  +V+LN L+++T+LQS FSVN +AL   +P+   L  I+  FV  R EVV+RRT
Sbjct: 304 LKKDSLPNVVLNTLFKHTALQSTFSVNNIALVKGRPQMLNLKDIIYNFVEHRHEVVIRRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KYLL KA +RAH+L GL IA  N+DEV+ +IR S N E AR +L++R             
Sbjct: 364 KYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVER------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q +AI+E+RL +LTGL +D +R E + L I I++  DILSS
Sbjct: 411 -------------FQLSEIQVKAIVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R + II+ ELL +K++    RR+ I     D   ED I  E +V+T+SH GY+KR PL
Sbjct: 458 EDRRMEIIQTELLEIKEKYGDDRRSEINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y+ Q RGG G+     RDEDF+  +F  + H  +LFF+  G  +  +V+ +P GS  +
Sbjct: 518 KEYKIQNRGGVGQKASTTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTS 577

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+A+ N+++L+  +RI   +      +E   NN YV+  TK G V++  L  + +   +
Sbjct: 578 KGRAIQNLMNLDPDDRINAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRIN 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
           G  A+ +   DE+LS      EN ++L  + G+ +RF    IR    R + GV+GI+LA 
Sbjct: 638 GINAISVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPMG-RGAAGVKGITLAS 696

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VI M  V +                                               
Sbjct: 697 EKDEVIGMICVKNP---------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALVAV 844
                +E+ +L VSEKG+GKRT   D      +RI+NR GKG++   +S+  + G LVA+
Sbjct: 711 -----QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISE--KTGQLVAM 763

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D D ++++   G  IR+ V++IR   R+T+GV + S   D+ + +V +I  +E  D
Sbjct: 764 KTVHDEDDLMIIKKSGVAIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKII-NEDED 822

Query: 905 EAESTE 910
           E E  +
Sbjct: 823 ETEIND 828


>gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259]
 gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259]
          Length = 849

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/855 (42%), Positives = 545/855 (63%), Gaps = 19/855 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   EQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR  LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP+VL  + PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMARIAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL ++ +   A++D P  D+++L+ I++ PDFPT  +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNLTDICNALFALLDAPATDIESLISIVQAPDFPTAGIIYGLSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R   H+E    SG ++ I++ E+PYQVNKA +L +I ELVR+K+I  IADLRDESD+ G
Sbjct: 242 MRATCHVEDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV IELKRG +ADV+LN LY+ T +Q  F +NMVAL   +P    L  +L AF+  R E
Sbjct: 302 MRVYIELKRGENADVVLNNLYKQTQMQDTFGMNMVALIDGQPRLLNLKEMLDAFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+R H+L GLA+A+AN+DE+V +I+ S  P  A+  L+ R+W ++ +
Sbjct: 362 VVTRRTVFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMV 421

Query: 428 KDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++  ID       + G          +LSE+Q + ILE++L RLT L  D I  E   
Sbjct: 422 EEMLARIDPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I + LDIL++ +R+  II++EL  V+D+    RR+ IVE   DM  ED I  E+MV
Sbjct: 482 IMAKIADLLDILANPARITQIIREELTQVRDQFGDGRRSTIVENAQDMSMEDLIKPEEMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K  PL  YRAQ+RGG+G+     +DEDF+  +F+ +TH  +L FS+ G +Y
Sbjct: 542 VTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRLY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G   ARGK ++N+L L  GE+I+ ++P    ++  +  YV  AT +G V++
Sbjct: 602 WLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPV---KTFDDEHYVFMATANGIVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +   +G IA+ LD  D +         +D++L +  G+ VRF  + +R    R
Sbjct: 659 TPLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV G+ LAKG ++IS+ +   A+ + D  +   ++   +R  I+  T    + +   
Sbjct: 718 AARGVIGMKLAKGAKLISLLV---AEDENDFVLTATENGYGKRTPIAEYTRHARATQGMI 774

Query: 780 SVEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +++      +     L   +  I+ ++  G   RT   + R  +R+ +G+   ++ K  +
Sbjct: 775 AIQTSERNGKVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRATQGVTLINLDKGEK 834

Query: 838 IGALVAVFPVNDNDQ 852
           + +L  V   ++ ++
Sbjct: 835 LISLEKVAETDNEEE 849


>gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 887

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/902 (43%), Positives = 539/902 (59%), Gaps = 75/902 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P  S  ARG+ L+N+L                                     
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLL------------------------------------- 624

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L D   I               +L VE  T+ + I + T  G   + P+     F+ +
Sbjct: 625 -PLDDGEYIT-------------TMLPVEEYTEGHYIFMATANGTVKKTPLE---SFSRQ 667

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            SVG+  + L +GD +IS AI      D +  +          R    D   +       
Sbjct: 668 RSVGLIALELDEGDVLISAAIT-----DGEREVMLFSDGGKVTRFKESDVRAMGRTARGV 722

Query: 780 SVEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                   ++   +    +   ILT S +G+GKRT+  +F    R G+G+ A   +  N 
Sbjct: 723 RGMRLPEGQKLISMLIPEEGSQILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRN- 781

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   A DE +V +ER+
Sbjct: 782 -GRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLASDETLVGLERV 840

Query: 898 RE 899
           +E
Sbjct: 841 QE 842



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 112/274 (40%), Gaps = 19/274 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M   +       +   +  G VK+ PL  +  QR    G   + + + D +    
Sbjct: 630 EYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRS--VGLIALELDEGDVLISAA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      V+ FS  G V + K   +      ARG   +  + L +G+++ +++  PE+ S
Sbjct: 688 ITDGEREVMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IPEEGS 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++ A+  G  +R  +S+F +  R G+  + + S D    ++         +I+L
Sbjct: 744 Q-----ILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  ++ +     RN+ GV  I LA  + ++ +  V    ++ +      +  
Sbjct: 799 ISDQGTLVRTRVAEVSSLG-RNTQGVTLIKLASDETLVGLERVQEP-SEVEGEELEGEEG 856

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            A    +  D +++T    D  ++    EE  Q+
Sbjct: 857 VAFEGTLGADVDDVT---GDQPLDAAADEEEPQD 887


>gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
          Length = 917

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/907 (39%), Positives = 512/907 (56%), Gaps = 95/907 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V +  EM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 40  ERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNK 99

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 100 CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 159

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   +  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 160 RMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 219

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV DG    +D+PD   + L+E     I+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 220 NLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATILGHKGIEQAYRTGRGLIT 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 280 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSGRTGQ 338

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +VA + +V
Sbjct: 339 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVAHQIDV 398

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM          
Sbjct: 399 VARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLMD--------- 449

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L   I +  
Sbjct: 450 -----------------LLDVDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYE 492

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +       RRTRI+    +M  ED I  E++VVTV+H G++
Sbjct: 493 DILAKPERQRQIVGDELDEIVSRYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHAGFI 552

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF+  G VY+ K + LP 
Sbjct: 553 KRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPE 612

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V ATK G V++ +LS++   
Sbjct: 613 GSRDSKGQHVANLLQFAPDEHIQTVLSIPNYEVAE---YLVLATKSGKVKKTRLSEYDSP 669

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C   +DI+L ++ G  ++F     ++   GR +
Sbjct: 670 RQGGLIAVRLMTDENGEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQT 729

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD ++SM +V                                        
Sbjct: 730 AGVQGMKFREGDSLLSMDVVW--------------------------------------- 750

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +  V+ +GF KRT+  ++R+  R+G G++A  + +    G L
Sbjct: 751 ------------GQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEG--RGEL 796

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V+++DQ++ +   G +IR  VNE+    R T+GV +    K + ++S+ R  E+E
Sbjct: 797 VGALVVDESDQVLAIMKSGKVIRSNVNEVNRTGRTTQGVTLAKPDKGDEIISIARNAETE 856

Query: 902 IVDEAES 908
              E ++
Sbjct: 857 DELEEQA 863



 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 13/273 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +         + +V  +  G VK+  LS Y + R+GG     ++  +     D +
Sbjct: 632 EHIQTVLSIPNYEVAEYLVLATKSGKVKKTRLSEYDSPRQGGLIAVRLMTDENGEHADEL 691

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S  G   K K        P  R  A +  +   +G+ + ++    
Sbjct: 692 IGANLCNDTDDIVLVSRKGMSLKFKA-DNDQLRPMGRQTAGVQGMKFREGDSLLSMDVV- 749

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
                  +  +   T  G  +R  +S++    R+G   K    ++ R E++      + +
Sbjct: 750 ---WGQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEGRGELVGALVVDESD 806

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            +L   K G+ +R  ++ +    GR + GV      KGD++IS+A     + + +E+   
Sbjct: 807 QVLAIMKSGKVIRSNVNEVN-RTGRTTQGVTLAKPDKGDEIISIARNAETEDELEEQAKG 865

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               + +      + E   + +   SV     E
Sbjct: 866 TSEGAVEGAAQPDNAEVAQTAELAESVTVENGE 898


>gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
 gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
          Length = 837

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/897 (40%), Positives = 544/897 (60%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+ NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  TL  I+  ++  + EV+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYIKHQIEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++  R+  II +E+  +K +    RRT + +  +L +EDED I  ED+++T S+ GY+KR
Sbjct: 456 ANPERVKAIIIEEMDEIKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITFSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+            Y  F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEEETIQTII--KAKREDIEGKYFFFTTRQGLVKRTNASEFHNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+LG  VRF  S+IR    R++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLMTNGQEDIIIGTRLGYSVRFNESSIRQMG-RSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  A +                                                 
Sbjct: 693 DQDLVVGAARI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GK+T + ++    R GKGI+  +++  N  G +  +  V+  
Sbjct: 704 ----TDDQEVLIITENGYGKKTLASEYPTKGRGGKGIKTANITAKN--GPIAGLVTVSGQ 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I+++++KG +IR  ++++    RAT GV +    +D ++V+   +      ++ E
Sbjct: 758 EDIMIITNKGVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVTFALVEAEAETEDIE 814


>gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
 gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
          Length = 829

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/903 (40%), Positives = 544/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 2   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 411 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT  +V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAA---KYLFFTTRNGIVKRTSTSQFSNIRT 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R    R + GV+G++L 
Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDMG-RAAAGVKGVNLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +  +                                              
Sbjct: 692 EGDYVVGTSRIDDS---------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 706 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +    E E VD  E
Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 816

Query: 908 STE 910
            T+
Sbjct: 817 LTD 819


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/861 (42%), Positives = 540/861 (62%), Gaps = 29/861 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP+VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+VD C+ ++  PD D++AL++I++ PDFPT  +I G  G++  Y TGRG ++
Sbjct: 182 IPPHNLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIYGLAGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     DR+ I+V E+PYQVNK  + E++AELV EK+I  I+++RDESD+ G 
Sbjct: 242 MRARTHFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN+L+++T LQ  F +NMVAL   KP    L  +L  F+  R EV
Sbjct: 302 RLVIELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGKPRLLNLKQMLVCFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR H+L GLA+A++N+DE++ +I+ +P P  A+RELM R W ++ ++
Sbjct: 362 VTRRTIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      SY                 LSE Q +AILELRL RLTGL +D I  E   +
Sbjct: 422 EMLSRALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYREV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  II +EL +++++   PRR+ +V    ++  ED I  EDMVV
Sbjct: 482 MDVITDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIEDLITPEDMVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY KR PL+ YRAQRRGG+G+    M+DEDF+  LF+ +TH +VL FS+ G  Y 
Sbjct: 542 TLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGRCYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P G+  +RGK ++N+  L +GE+IT ++P  E +      +V  AT  G V++ 
Sbjct: 602 LKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEE---HFVFMATSEGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F    ++G IA+ LD  D ++ V     + D++L +  G+ VRF  + +R    R+
Sbjct: 659 ALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDVRPMG-RD 717

Query: 721 SVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           + GVRG++L  G  VI+M +       VL A  +   +   +   +   R   G     T
Sbjct: 718 ARGVRGMTLEDGQAVIAMLVAKDESQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQT 777

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +N   V   + E            ++ +S  G   RTS    R   RS +G+   ++ 
Sbjct: 778 SDRNGRLVGAVLVE--------PSDEVMLISTGGVLIRTSVESIREMGRSTQGVTLINLD 829

Query: 834 KINEIGALVAVFPVNDNDQII 854
           +   + ++  V   +++D+ +
Sbjct: 830 EGTFLASIEKVAE-SESDESM 849


>gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147]
          Length = 836

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/903 (40%), Positives = 544/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT  +V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAA---KYLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R    R + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDMG-RAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +  +                                              
Sbjct: 699 EGDYVVGTSRIDDS---------------------------------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +    E E VD  E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 823

Query: 908 STE 910
            T+
Sbjct: 824 LTD 826


>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
 gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
 gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
          Length = 856

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/905 (40%), Positives = 532/905 (58%), Gaps = 67/905 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 4   QERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGS+D DPPAA RYTE
Sbjct: 64  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTE 123

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL+      LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP
Sbjct: 124 SRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++ G +A+I NP+I    LM  I GPDFPTG  +LG  GI++AY TG+GSI +R
Sbjct: 184 PHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMR 243

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ I+         R+ I++TE+PYQ NKAA++E+IAE+V EKR+  I+D+RDESDR G
Sbjct: 244 GVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDG 303

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQS FS NM+AL   +P   TL   L+ F+ FR E
Sbjct: 304 MRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR S +   A++EL+         
Sbjct: 364 TIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELID-------- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ+ AIL+++L RLT L  + I  E   L   I++ 
Sbjct: 416 ------------------VYGLSEVQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDY 457

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ EL  ++     PRRT ++E   ++E  D I  E  ++ ++  GY
Sbjct: 458 RDILARRERVLEIIETELEQLQQRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ RG +G++G   +D+D V        H ++LFFS  G VY    +R+P
Sbjct: 518 IKRMPVNEFTAQSRGTRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG  ++ +L + + ERIT+I+P     +  ++ Y+V  T+ G +++  LS F  
Sbjct: 578 AASRNARGVPIVQLLPIPREERITSIVPVS---AFSDDEYLVMLTQGGYIKKTALSAFAN 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L   D++  V     E+ IL+ ++ G  + F  S   +   GR + GVR 
Sbjct: 635 IRSNGLIAIALSEGDQLRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRA 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +SL  GD +ISM ++  +                   L +  TE     + D +VE    
Sbjct: 695 MSLRSGDTLISMDVLPAS-------------------LTANMTETGDEDEADDAVE---- 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 +     ++L V+ +G GKR   + FR+  R+G G+RA      ++   LV++  
Sbjct: 732 -----VVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKF--RSKQDELVSLRI 784

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVD 904
           V   D+++++S +  +IR   + I   SRA  GV +     D+ + +V  +   E E+ +
Sbjct: 785 VESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGEEELDE 844

Query: 905 EAEST 909
            +E  
Sbjct: 845 TSEDA 849



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 95/245 (38%), Gaps = 17/245 (6%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L++  E+ +++    E  ILL T+ G   R P++     + R + G  G      D V 
Sbjct: 490 LLEADGELETIDLIANEKSILLLTQQGYIKRMPVNEFTAQS-RGTRGKAGAKTKDDDSVE 548

Query: 737 SMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                   D      D  + Y                           E  I+       
Sbjct: 549 HFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLPIPREERITSIVPVSA 608

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +++++ +++ G+ K+T+   F  +N    G+ A  +S+ +++  +    P    D I
Sbjct: 609 FSDDEYLVMLTQGGYIKKTALSAF--ANIRSNGLIAIALSEGDQLRWVRLAKP---EDSI 663

Query: 854 ILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------EIVDE 905
           ++ S KG  I  R   +++R   RAT+GV   S    + ++S++ +  S      E  DE
Sbjct: 664 LIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPASLTANMTETGDE 723

Query: 906 AESTE 910
            E+ +
Sbjct: 724 DEADD 728


>gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27]
 gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27]
          Length = 805

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/886 (42%), Positives = 533/886 (60%), Gaps = 86/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDAL RMAQ W+LR  LI+GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ KDTVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+I+NP I L+ +M  + GPDFPTG   L + GIK AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGK-LSKKGIKEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E   G R  +VVTEIPYQVNKA+++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 VE-EKGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LNQLY++T+LQ+ F+VN++A+   +P+  +L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR  LM+R               
Sbjct: 362 ELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   +
Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RLL  +K +LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLES 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED  T +F+   H  +L F++ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + ++L L + E +  ++     +      ++VFAT+ G V+R  L ++  + ++G IA
Sbjct: 576 VHVKSLLPLAEDEEVAALLSVRGLDQEG---HLVFATERGLVKRTALKEYQNLGQAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734
           ++L   D ++ V     E++ +L T+ GQ +RFP+  +R   GR++ GV G+   K  D+
Sbjct: 633 IRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKKPEDR 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ +V   +                                                 
Sbjct: 692 VVSLVVVKPGEM------------------------------------------------ 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L+VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   + ++
Sbjct: 704 ---VDLLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVST--KVGRLAALLKVRGGEDLL 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++S +G  IR PV EIR  SRAT GV + +  +D+ V S   + E 
Sbjct: 759 VLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEE 804



 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 107/276 (38%), Gaps = 62/276 (22%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQ 692
            F  ++   +   V+  T  G ++R  L  +    R GK  +A +    DE   V     
Sbjct: 486 TFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEATHVFVADA 545

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYD 749
            +D+LL T  G+  R  +  +     R + GV     + LA+ ++V ++  V   D    
Sbjct: 546 HDDLLLFTNRGRVYRLKVYELPEMG-RQARGVHVKSLLPLAEDEEVAALLSVRGLD---- 600

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                         +E  ++  +E+G  
Sbjct: 601 ----------------------------------------------QEGHLVFATERGLV 614

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT+  ++   N    G+ A  + + +    LV V   +  D+ IL + +G  IR P+ E
Sbjct: 615 KRTALKEY--QNLGQAGLIAIRLQEGDR---LVGVALSDPEDEAILATQEGQAIRFPLEE 669

Query: 870 IRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +R   R T+GV+     K ++RVVS+  ++  E+VD
Sbjct: 670 VRATGRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVD 705



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 99/300 (33%), Gaps = 89/300 (29%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD  DE+++         ++  ++     R  +      +   +  +  + L +  
Sbjct: 376 LLIALDHIDEVIA---------LIRGSEDAPKARIALMERFGLSEAQAQAILDMRLQR-- 424

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-------------SS 780
                 + L  +   +E    M+ ++  + ++  +   +  +K D             + 
Sbjct: 425 -----LVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDARRTL 479

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +         ++L   E  ++T++ +GF KR     +R   R GKG+ A    + +E   
Sbjct: 480 ITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEA-- 537

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNE----------------------------IRI 872
              VF  + +D ++L +++G + R+ V E                            + +
Sbjct: 538 -THVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSV 596

Query: 873 AS-----------------RAT---------KGVVIFSTAKDERVVSVERIRESEIVDEA 906
                              R            G++     + +R+V V     S+  DEA
Sbjct: 597 RGLDQEGHLVFATERGLVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVAL---SDPEDEA 653


>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 821

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/903 (41%), Positives = 537/903 (59%), Gaps = 84/903 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKDELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++     E    N+ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHENVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +R     +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLM-KRAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLKTGDVVVGAGVLESDE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+G+GKR  +  + +  R G G +   ++  ++ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIE 818

Query: 904 DEA 906
            E 
Sbjct: 819 SED 821


>gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 813

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/871 (42%), Positives = 514/871 (59%), Gaps = 87/871 (9%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
            RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+
Sbjct: 9   ARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDF 68

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGSVDGD  AA RYTE RL K AH +L D+ K+TVDF PNYDGS QEP
Sbjct: 69  SLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEP 128

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           +VL  R PN+LVNG  GIAVGMATNIP HNL EVVD C+ ++ +P+  +DALMEII  PD
Sbjct: 129 LVLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPD 188

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEK 283
           FPT  +I G  G+K+ Y TGRG +V+R   H E      R+ I+V E+PYQVNK  + E+
Sbjct: 189 FPTAGIIYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQER 248

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           +AELV EK++  I+ ++DESD+ G R+VIELKRG   +V+LN LY+ T LQ  F +NMVA
Sbjct: 249 MAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVA 308

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           L   +P    L  ++  F+  R EVV RRT + L KARDR HVL GLA+A+AN+DE +RI
Sbjct: 309 LVDGQPRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIRI 368

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR SP P  A+ ELM                              LS+ Q + IL++RL 
Sbjct: 369 IRESPTPPVAKAELMS--------------------------LYRLSDTQAQEILQMRLQ 402

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTR 519
           RLTGL +D I  E   +   I++ LDIL+   R+  II +EL +V++E        RR+ 
Sbjct: 403 RLTGLEQDKIVAEYKEVMAHIEDLLDILAKPERVSTIIGEELTAVREEFGQTKLGARRSE 462

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I     D+  ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  
Sbjct: 463 IEHSAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQ 522

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           LFI +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D
Sbjct: 523 LFIANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGD 582

Query: 640 -ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
             S   + YV  AT  G V++  L +F    ++G IA+ LD  D ++       ++D++L
Sbjct: 583 MRSFPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVML 642

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G+ VRF  + +R    R + GVRG++L     VI+M +                  
Sbjct: 643 FSDGGKAVRFDENDVRPLG-RQARGVRGMTLEDSQSVIAMLVAED--------------- 686

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                + Q +LT +E G+GKRTS  ++ 
Sbjct: 687 -------------------------------------ESQSVLTATENGYGKRTSIVEYT 709

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R  KG+ A   S+ N  G +VA   V+ +D+I+L++D G L+R  V EIR   RAT+
Sbjct: 710 RHGRGTKGMIAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVAEIRELGRATQ 767

Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           GV + +  +   +  ++RI E++  +   + 
Sbjct: 768 GVTLIALDEGATLSGLQRIVENDANENDATD 798


>gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
 gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
          Length = 861

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/902 (40%), Positives = 546/902 (60%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I +V ++ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEFKENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQDWS R  L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++NPD     LME I GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     +E+I+V E+PY VNKA ++E+IA+L R+KRI  I DL DESDR G R
Sbjct: 243 VRAKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ TS+Q+ F  NM+A+    P+  +L  IL+ ++  +E V+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y   KA  RAH+L GL IA+ +++E++RIIR S   + A+  L++          
Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE Q +AIL++R+ RLTGL RD I +E   L   I++  D
Sbjct: 413 ----------------TYGLSEKQAQAILDMRMVRLTGLERDKIESEYTELIALIEDMAD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II+ ELL V+++    RRT + V  +L +EDED I  ED+V+T++  GY+
Sbjct: 457 ILAKPERIHKIIETELLEVQEKFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S +++QRRGG+G  G+ + D+DF+  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPSSEFKSQRRGGRGIQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++ GE +  ++    +    + LY+ F T+ G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSGETVQAVINVRGEAE--DGLYLFFTTRLGTVKRTDVKAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++SV     + +I++ T +G  V F    +R    R + GVRGI 
Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDENIIIGTHMGYAVSFHEKDVRNMG-RTAGGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI +                                                  
Sbjct: 694 LRENDYVIGV-------------------------------------------------- 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +L  ++  +L ++EKG+GKRT + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 704 ---DLLKEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L+++ G +IR  V+ +    RAT GV +   A++ +V ++ ++    I DE + 
Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEEVKVSTMAKVDAEVIEDEIDE 818

Query: 909 TE 910
           TE
Sbjct: 819 TE 820


>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
 gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
          Length = 850

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/898 (40%), Positives = 529/898 (58%), Gaps = 93/898 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + K
Sbjct: 7   DKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTV+F PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EVV   V +IDN      +  ++ LMEI++GPDFPTGA ILGR  I+ AY TGR  I
Sbjct: 187 NLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATILGRRAIEQAYRTGRSKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V++IE  +  + +I+V+E+PY VNKA ++EKIA+LV+EK+I  I  + DES+R+G 
Sbjct: 247 KVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L  ++  +E+V
Sbjct: 307 RINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQPKVLNLHQMLDYYLKHQEDV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y LNKA +RAH+L GL IA+ ++DEV+ IIR S N   A+R L +R        
Sbjct: 367 VRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q +AI+++RL  LTGL R+ I NE   L   I E  
Sbjct: 419 ------------------FGLSDAQAQAIVDMRLRALTGLEREKIENEYKELQARISELK 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+   +LL +IK E+  + D+    RRT I     DM  ED I  ED V+ ++HLGY+
Sbjct: 461 AILADEKKLLTVIKDEITVIADKYGDDRRTAIGYD-DDMSMEDLIPDEDTVIAMTHLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +R+Q RGGKG  G+   +ED++ DL + + H  V+ F++ G VY+ K + +P 
Sbjct: 520 KRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A++N+L L   E+IT I+P  E      + Y+  ATK G V++  + ++  +
Sbjct: 580 AGRTARGTAIVNLLQLQPEEKITAIIPMREYNE---DKYLFMATKGGMVKKTPMCEYENV 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+    + DI L TK G C+RF  + +RV  GR S+GV G+ 
Sbjct: 637 RKNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDVRV-TGRVSMGVIGMR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD+VI M +    D+                                          
Sbjct: 696 FEDGDEVIGMQMASQGDS------------------------------------------ 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L VSE G GKRT   +F   NR GKG+    +++  + G L+    V+
Sbjct: 714 -----------LLVVSENGMGKRTVINEFSAQNRGGKGVICYKITE--KTGCLIGAKLVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVD 904
           D  +I++++ +G +IR+ V++I +  R T GV + +   D   +V S+ ++RES   D
Sbjct: 761 DGREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVASIAKVRESVTKD 818



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 91/240 (37%), Gaps = 15/240 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +  +   +  G VK+ P+  Y   R+   G   +V+R+ D + ++
Sbjct: 598 EEKITAIIPMREYNEDKYLFMATKGGMVKKTPMCEYENVRK--NGLQAIVLRENDELIEV 655

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
                   +   +  G   +     + +    + G   +  +    G+ +  +      +
Sbjct: 656 KATDNQEDIFLITKNGMCIRFHETDVRVTGRVSMG---VIGMRFEDGDEVIGM------Q 706

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
            +     ++  +++G  +R  +++F   NR GK  +     ++   ++  +      +I+
Sbjct: 707 MASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVICYKITEKTGCLIGAKLVDDGREIM 766

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  +R  +  I V   RN+ GV+ +++     +   +I    ++   +   Y + 
Sbjct: 767 MITTEGIVIRMVVDDISVIG-RNTSGVKLMAIDHDSDIKVASIAKVRESVTKDSNVYNEE 825


>gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3]
 gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3]
          Length = 871

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/869 (42%), Positives = 537/869 (61%), Gaps = 37/869 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPQASIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  ++V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLECFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+D+ + +I+ +P P  AR+ELM RSW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLARAEAENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIIGEELTAVKSEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMG 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L  G QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + E         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGKVVAATLVE--------PESEIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +G+    + +   +  L  +   + + +I
Sbjct: 830 QGVTLISLDEGTRLSGLQQIAEADADSEI 858


>gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5]
          Length = 851

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/895 (36%), Positives = 533/895 (59%), Gaps = 83/895 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVK 73
            I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M  ++ +  +K   K
Sbjct: 14  RIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELNLYSDKPTRK 73

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GK+HPHG+ ++YDA+ R+AQDWS+R  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 74  SARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDSPAAMRYTEA 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    ++ D+ K+TVD+  N+D +  EP VL  + P ++VNG  GIAVGMATN+  H
Sbjct: 134 RMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAVGMATNMAPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C A IDNP+I  + +++ I+GPDFPTG +I G  G++ A  TGRG +++R  
Sbjct: 194 NLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIYGYEGVREAMLTGRGRVMMRAK 253

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE T   RE IV+TEIPY +NKA M++KIA+++ EK+I  I+ + DESDR G R++I 
Sbjct: 254 TDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDESDRNGLRIIII 313

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK  A A V+LN L++ T LQ+ F+VN +AL   +P+   +  ++K FV  R +VVVRR 
Sbjct: 314 LKHDAVASVVLNTLFKNTPLQTSFAVNNIALVNGRPQMLPMRDLVKHFVDHRHDVVVRRA 373

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA +R H++ GL IA  N+DE+V IIR S  P+ A++ +++R             
Sbjct: 374 RFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIER------------- 420

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS++Q  AI+E+RL  LTGL    +  E + L  +I    ++L +
Sbjct: 421 -------------FNLSDIQASAIIEMRLRALTGLEYGKLIAERDELTKQIAYLKEVLEN 467

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               + IIK ELL +K++    RR+ IV    +   ED    +DMV+T+SH+GY+KR PL
Sbjct: 468 VGMQMQIIKDELLEIKEKYGDERRSEIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPL 527

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR Q RGG G  G   RDEDF+  +++ S H ++LFF+  G  +  KV+ +P G+  +
Sbjct: 528 AEYRTQNRGGVGAKGSATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSS 587

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+A+ N++ +   +++   +      DE   NN +++  TK G +++ KL  + +  ++
Sbjct: 588 KGRAIQNVIQIEPDDKVRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQN 647

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   D+++  +  + + ++++  + G+ +RF  S +R    R   GVRGIS+ +
Sbjct: 648 GVNAIVIREGDQLIEAKLTSGQAEVMIAARDGKAIRFNESTVRPIG-RVGAGVRGISIEE 706

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V                                                  
Sbjct: 707 SDEVVGMICVEPD----------------------------------------------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                +Q +L +SE G+GKRT   ++RI+NR GKG++  +V++  + G L+++  V D++
Sbjct: 720 ----SKQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTE--KTGKLISIQAVTDDN 773

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +++++  G  IR  V++IR+A RAT+GV I +  + + + SV  +  +   DE 
Sbjct: 774 DLMIINRSGLTIRTAVSQIRLAGRATQGVRIINLREGDAIASVMAVPAAGDEDEE 828



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 106/241 (43%), Gaps = 13/241 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  V  + ++  +  G +K+  L  Y   R+   G + +V+R+ D + +  + S    V+
Sbjct: 616 EEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQ--NGVNAIVIREGDQLIEAKLTSGQAEVM 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +        G   +  +S+ + + +  ++    D        V+ 
Sbjct: 674 IAARDGKAIRFNESTVRPIGRVGAG---VRGISIEESDEVVGMICVEPDSKQD----VLV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R  L ++   NR GK    ++  ++   ++S++  T +ND+++  + G  +R
Sbjct: 727 LSENGYGKRTDLDEYRITNRGGKGVKTINVTEKTGKLISIQAVTDDNDLMIINRSGLTIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S IR+ AGR + GVR I+L +GD + S+  V  A  + +E        +        
Sbjct: 787 TAVSQIRL-AGRATQGVRIINLREGDAIASVMAVPAAGDEDEEVQSAEVAATGNDATPEA 845

Query: 768 D 768
           D
Sbjct: 846 D 846


>gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519]
 gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium
           sticklandii]
          Length = 817

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/904 (39%), Positives = 545/904 (60%), Gaps = 89/904 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E       E    I  + I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRILF M
Sbjct: 1   MSEE----KNEMIDKIVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+   K Y K A + G+V+GKYHPHG+ A+YDA+ ++AQD+S R  L+ G GNFGS+
Sbjct: 57  NDLGLVPEKSYRKSATVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++QK    LL D+ K+TVDF  NYD   +EP VL ARYPN+LVNG  
Sbjct: 117 DGDSAAAMRYTEAKMQKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNL EV+D  V +IDN +  ++ +M+ I+GPDFPTGA I+G+  I++A
Sbjct: 177 GIAVGMATSIPPHNLREVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIMGKGSIRDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + IE+    + QI+VTEIPYQVNKA M+EKIA+LV++KRI  I DLR
Sbjct: 237 YMTGRGKVTVRSKADIEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R G R+VIE++R  + +++LN LY+++ LQ +FS+ M++L   +P+   +  +L  
Sbjct: 297 DESNRDGIRIVIEVRRDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGEPKVLNIRDMLVH 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++ VV RRT+Y L KA++RAH+L GL IA+ N+D V++IIR S N   A+ +L + 
Sbjct: 357 YLNHQKNVVRRRTEYDLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEE 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q++AIL++RL RLTGL R  I  E   L
Sbjct: 417 --------------------------FGLSDIQSQAILDMRLQRLTGLERGKIEEEFAEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL  +S LLGIIK E+L ++++    RRT I E   ++   D I  E++ V
Sbjct: 451 MKNIAYYESILQDQSILLGIIKDEMLKIREKHGDKRRTEITEAADEINILDTIPDEEVTV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T +H GY+KR+P+  Y+AQRRGGKG + +  RD+DFV  L + + H+ +LF ++ G +Y+
Sbjct: 511 TFTHYGYIKRIPMDTYKAQRRGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYR 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
              + +P     A+G  ++N++ L + E++T+ +   +        Y+V  TK G +++ 
Sbjct: 571 LNAYEIPQSGRIAKGTNIVNLIPLEKNEKVTSFISIRD---VPAENYLVMCTKKGVIKKT 627

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++S+F +  R+G IA+ L   DE+++V+T   E D ++ TK G  + F    +R    R 
Sbjct: 628 QISEFRKSTRNGLIAISLREDDELINVKTTDGEQDFIIVTKKGMAISFDEKQVRDMG-RA 686

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           ++GVR I LA  D+V++M +V                                       
Sbjct: 687 AMGVRAIRLAPDDEVVAMELVDP------------------------------------- 709

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            + +L +SEKG+GKRT++ D+R+  R GKG++   +S+  + G 
Sbjct: 710 ----------------NKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISE--KTGI 751

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V  +++I++++  G+LIR+ VN+I I SR T GV +  T ++  VV++ RI   
Sbjct: 752 LVGAKAVYKDEEIMIINSDGSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALARIVVP 811

Query: 901 EIVD 904
           +  +
Sbjct: 812 KEDE 815


>gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
 gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
          Length = 825

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/889 (40%), Positives = 537/889 (60%), Gaps = 85/889 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K 
Sbjct: 3   EAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     +++NP++  + LME++ GPDFPTG +++G++GI+ AY TG+GSI +
Sbjct: 183 PPHNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSITV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG   + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+
Sbjct: 243 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+++R  SA VILN LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV 
Sbjct: 303 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++  NKA  RAH+L GL IA+ ++DE++ +IR S + + A+  +M+R          
Sbjct: 363 RRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AIL++RL RLTGL RD I NE  SL   I +  DI
Sbjct: 413 ----------------FSLSDRQAQAILDMRLRRLTGLERDKIENEYQSLLELIADLKDI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L++  R+L II+ EL  +       RRT + V  +L +EDED I  E++V+T+++ GY+K
Sbjct: 457 LANPQRVLEIIQTELQELGQRFGDERRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV  S +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF+++G VYK K + +P  
Sbjct: 517 RVANSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEY 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L ++  ERI  I+            Y+ F T+ G V+R  ++ F  I 
Sbjct: 577 GRAAKGIPVINLLGIDSNERIEAIISASG--GPQEGRYLFFTTRLGIVKRTSVTAFSNIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE+++V     ++ +++ T  G  V F    +R    R + GVRGI L
Sbjct: 635 ANGLIAIGLRENDELVNVVETNGQDVMIIGTHNGYSVTFKEELVRDMG-RTAAGVRGIRL 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+  +++                                                
Sbjct: 694 REDDYVVGASVIK----------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 ++  +L ++E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+ 
Sbjct: 707 ------EDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            + I+L++DKG +IR  V  +    RAT GV +       +VV++  + 
Sbjct: 759 KEDIMLITDKGVIIRFNVETVSQTGRATLGVRLMKMENGAKVVTMATVD 807



 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 15/223 (6%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
              +           +   + LG VKR  ++ +   R    G   + +R+ D + ++   
Sbjct: 598 EAIISASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVVET 655

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +    ++  +  G+    K   +      A G   +  + L + + +       ED    
Sbjct: 656 NGQDVMIIGTHNGYSVTFKEELVRDMGRTAAG---VRGIRLREDDYVVGASVIKEDSE-- 710

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTT 700
               V+  T++G  +R K S++    R GK    A        +  + T + + DI+L T
Sbjct: 711 ----VLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGKEDIMLIT 766

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
             G  +RF +       GR ++GVR + +  G +V++MA V  
Sbjct: 767 DKGVIIRFNV-ETVSQTGRATLGVRLMKMENGAKVVTMATVDP 808


>gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
 gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
          Length = 889

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/928 (40%), Positives = 550/928 (59%), Gaps = 90/928 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 24  DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 84  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN
Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 204 IPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 383

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S ++
Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 443

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 444 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 504 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +                                 
Sbjct: 624 FSNRGRVYWIKVYEVPQGSRNSRGRPI--------------------------------- 650

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                V    L D  +IN              +L V+  + +  + + T LG   + P+ 
Sbjct: 651 -----VNMFPLQDGEKIN-------------VVLPVKEFSADKFVFMATSLGTVKKTPLE 692

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A   F+     G+  + L +GD +I  +I        D     M    A + +   + + 
Sbjct: 693 A---FSRPMKKGIIAVGLDEGDYLIGASIT-------DGAHDVMLFSDAGKAVRFDENDV 742

Query: 772 ITSLKNDSSVEGNISEERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    V G   +E  Q + L     ++Q +LT +E GFGKRT   ++    R  KG
Sbjct: 743 RPMGREARGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKG 802

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  
Sbjct: 803 MIAIQTSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLD 860

Query: 887 KDERVVSVERIRESE----IVDEAESTE 910
           +  ++  +++I E+E      DEA   E
Sbjct: 861 EGTKLSGLQQIAEAEDGDGEADEASDGE 888


>gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
 gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
          Length = 827

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/901 (42%), Positives = 544/901 (60%), Gaps = 86/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + +EEKG+T V I+ EM+ +YL Y+++VI+GRA+PD+RDGLKPVHRR+LF   +M    
Sbjct: 2   ENNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRH 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y+K AR+ G+V+GKYHPHG+A++YD + RMAQD+SLR  L +GQGNFGS+DGD PAA
Sbjct: 62  NRPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  LL+DL K+TV F PNYD S   P VL +++PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DGC+ +I NPD  ++ LM+ I+GPDFPT  VI GR GI  AY  GRG 
Sbjct: 182 TNIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIAGREGILQAYKKGRGI 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + I+ V+ I +   DRE+I++TEIPYQVNKA ++E +A+LVR+K+I  I+D+RDES R+G
Sbjct: 242 VTIKAVAEIVQVK-DREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
            R+V+ LKRG +A VILN+LY+YT +Q+ F + M+AL+   +P  F L G+L+AFV  R 
Sbjct: 301 MRIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV +R  + L KA++RAH+L GL  A+ +++EV++ IR S     AR  LM +      
Sbjct: 361 DVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSK------ 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  SE Q  AILE+RL RLTGL RD I  EL  L  +I  
Sbjct: 415 --------------------FEFSERQAVAILEMRLQRLTGLERDKIVAELAELMKQIDW 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +LS    +  II  EL  VK     PRRT+I   L D+EDED I  E MVVTV++ G
Sbjct: 455 LKFVLSDVREIYKIIVSELEDVKKRYADPRRTQITGDLSDLEDEDLIADEQMVVTVTNTG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +KR+P+  YR Q+RGGKG  G+  ++ED+VTD+F  ST T +L F+  G VY  KV RL
Sbjct: 515 LIKRIPVEEYRVQKRGGKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRL 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+G+  ++GK+L N++ L+ GE +  I+P  E      N Y V  T+ G +++  L  F 
Sbjct: 575 PLGTRTSKGKSLANVVQLSNGESVRAILPVNE---FSENKYAVMLTEKGVIKKTSLDAFA 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +G IA+  D  D ++ V+    ++DI + TK G  +RF  + +R    R + GV+ 
Sbjct: 632 NPRTAGIIALTTDLDDGVIDVKISDGQSDIFIATKEGMSIRFNEADVREMG-RTARGVKA 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+LAK D V++M ++     D                                       
Sbjct: 691 ITLAKDDVVVAMEVLEKNTKD--------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL V+ KG+GKR+ + ++RI +R G GI     +  +++G ++    
Sbjct: 712 ------------TILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTT--DKVGLVIGTKK 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V DN ++IL +DKG +IR+ V +I +  R T+GV + +  + DE V  V  + E E   E
Sbjct: 758 VADNMELILSTDKGQVIRMKVTDISVLGRNTQGVRLINIDEKDETVTGVAVVAEDETATE 817

Query: 906 A 906
            
Sbjct: 818 E 818


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
          Length = 893

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/854 (42%), Positives = 523/854 (61%), Gaps = 29/854 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++  +D                  Y +  DG   LSE Q + IL +RL RLTGL +D I
Sbjct: 422 EMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR  I     +++ 
Sbjct: 482 IGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +
Sbjct: 542 EDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE++T ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKE---FSEDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISG 767
            + +R    RN+ GVRG+ L +G  VI++ +               Y K          G
Sbjct: 719 ENDVRPMG-RNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHG 777

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              +       SS  G +       L +    I+ ++  G   RT   + R   R+ +G+
Sbjct: 778 RGTKGMIAIQTSSRNGRV---VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGV 834

Query: 828 RATDVSKINEIGAL 841
               V   + +  +
Sbjct: 835 TLISVDDGSSLSGV 848



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 14/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+ PLS +   R+   G   V + D D++    
Sbjct: 640 EKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKA--GIIAVDLDDGDYLIGAD 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  + L +G+ +  ++   ++  
Sbjct: 698 LTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG---VRGMMLEEGQTVIALLVAGDETQ 754

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
           S     V+ AT++G  +R  ++++ +  R  K  + + +      ++        ++I+L
Sbjct: 755 S-----VLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIML 809

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  ++ IR    R + GV  IS+  G  +  +  V+ +
Sbjct: 810 ITTGGVLVRTRVAEIREMG-RATQGVTLISVDDGSSLSGVRRVVES 854


>gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
 gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
          Length = 879

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/912 (37%), Positives = 514/912 (56%), Gaps = 93/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +S D      I  + I +EMQ SY+ YA++VI+GRA+PD+RDG+KPVHRRI++ M
Sbjct: 1   MSDDTLSGDTY--DRIFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W +R  L++GQGNFGS 
Sbjct: 59  YDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC++   A  ++ D+ ++ VDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +    ++DN D      LDA ME ++GPDFPT  +I+G +G
Sbjct: 179 GIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIVGDSG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+  G R+ IV+TE+PY VN    +  IAE V   ++  I
Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEV-GTRQVIVITELPYNVNPDNFISGIAEQVAAGKMTGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ L++ FS NM++L    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + EVQ  AIL ++L RL  L R  I +
Sbjct: 418 GLMS--------------------------LLDVDEVQADAILAMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L ++  EI +  DIL+   R   I+  EL  V D+    RRT++V    D+ +ED I R
Sbjct: 452 DLAAIEAEIADYKDILAKPERQRAIVADELREVVDKHGDERRTKLVAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     ++  +  Y+V AT+ G
Sbjct: 572 GRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVIQI---QTYQDAPYLVLATRDG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++       ++DILL ++ GQ +RF     ++
Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDDDILLVSEQGQSIRFTADDEQL 688

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M  V                                 
Sbjct: 689 RPMGRATAGVKGMRFRGDDQLLAMTTVSDG------------------------------ 718

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  Q++L  +  G+GKRT   ++    R G G+     + 
Sbjct: 719 -----------------------QYLLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTP 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V ++DQI  ++  G +IR  VN+IR +SRAT GV +     D  ++++
Sbjct: 756 --KRGKLIGALAVEEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLGDDVELLAI 813

Query: 895 ERIRESEIVDEA 906
           +   E E   EA
Sbjct: 814 DVNVEDEGEQEA 825


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/848 (43%), Positives = 545/848 (64%), Gaps = 17/848 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 6   REILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+AA+YD + R+AQ +S+R  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL D+ K+TVDF  NYDGS QEP VL  R PN+LVNGG GIAVGMATNIP H
Sbjct: 126 RMARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D CVA++D+P++ +++L+E +  PD PTG +I G  GI  A+ TGRG +V+R  
Sbjct: 186 NLREVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGTAGIHQAFRTGRGRMVLRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+ + DRE+IVVTE+PYQVNKA ++EKIAELV+E+R+  I++LRDESD++G R+V+E
Sbjct: 246 AEVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG + +++LN LYR+T +Q++F +N+VAL+  +P    L  +L+AF+  R EVV RRT
Sbjct: 306 LKRGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQPRTLNLRQVLEAFIRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S  P  A+ EL+ R W    + ++++ 
Sbjct: 366 IYELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLER 425

Query: 434 IDDSSYTI----------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              ++                G   LSE Q +AIL+LRL RLT + +D I  E ++L   
Sbjct: 426 AGAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLER 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E + IL S  RL+ +I++EL++++D+    R+T I E   ++  ED I  EDMVVT+S
Sbjct: 486 IAELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL  YRAQRRGG+G+S   M+DEDF+  LFI +TH ++L FSS G  Y  KV
Sbjct: 546 HHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP GS  +RG+ ++N+L L + ERI  ++P  E +    + +V  AT++G V++  LS
Sbjct: 606 YELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFDE---DHFVFMATRNGTVKKTPLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +   SG IA++L   D ++  E    + +++L +  G+ +RF  S +R    R + G
Sbjct: 663 HFSRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAMG-RTAGG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L  G +VI++ I+   D        Y K    +     G           +   G
Sbjct: 722 VRGIRLESGQRVIALLILGEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNG 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +          ++  I+ VS  G   RT   D     R+ +G++   + +  ++  L  
Sbjct: 782 RV---VGAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAEQLVGLER 838

Query: 844 VFPVNDND 851
           V  + + +
Sbjct: 839 VEGLAEGE 846


>gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537]
          Length = 851

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/902 (40%), Positives = 554/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ERNDMRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +LI+G GNFGSVDGD PAA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMAT+
Sbjct: 123 YTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     ++DNPD+    LM  + GPDFPTGA+++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   REQI+VTE+PY VNKA ++E+++ELVR+KRI  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A++  KP+   L  IL A++  + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGKPKTLNLKEILVAYLEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   + A+  L++          
Sbjct: 363 RRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 ----------------SYSLSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+  +R+  II  ELL ++ +    RRT + V  + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHSARVDKIIYNELLDIQQKFGDERRTELQVGDVTNIEDEDLIEEEDVIVTLTSNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + D+D +  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPTAEFKAQNRGGRGVQGMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+ +  E+I T++    D+++ +  Y+ F T+ G V+R  + DF  I
Sbjct: 577 YGRHAKGIPVVNLLNFDNDEKIQTLISVS-DQTAASESYLFFVTQLGVVKRTAVKDFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+L+V     E +I++ T  G  V F  S +RV   R++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVMG-RSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D ++  A +L+  A+                                         
Sbjct: 695 LRDDD-IVIGADILNPKAN----------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++E G+GK+T++ ++ I  R GKGI+  +++  N  G+LV +  V+
Sbjct: 713 -----------VLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKN--GSLVGMTIVD 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L +++G +IR   + +    RAT GV +    K+ +V ++ ++    +  E   
Sbjct: 760 GDEDIMLTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTD 819

Query: 909 TE 910
           ++
Sbjct: 820 SQ 821



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 90/236 (38%), Gaps = 15/236 (6%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +  V+ LG VKR  +  +   R    G   + + D+D V ++ I +   +++  +  
Sbjct: 612 ESYLFFVTQLGVVKRTAVKDFSNIR--TNGLKALTLHDDDEVLNVMITNGEQNIIIATHD 669

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+        + +    A G   +  + L   + +                 V+  T++G
Sbjct: 670 GYSVSFSESDVRVMGRSAAG---VRGIRLRDDDIVIGADILN------PKANVLVITENG 720

Query: 656 NVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             ++   +++    R GK    A        ++ +     + DI+LTT  G  +RF    
Sbjct: 721 YGKQTAATEYPIKGRGGKGIKTANITAKNGSLVGMTIVDGDEDIMLTTNQGVMIRFTA-D 779

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                GR ++GVR I L K  +V ++A V     D +      K +   +   + +
Sbjct: 780 SVSQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTDSQAKAVDETQSEQASE 835


>gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
 gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
          Length = 867

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/855 (42%), Positives = 525/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNPGATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ LM+RSW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLARAETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI+M +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGMIAIQTSERNGKV---VAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4]
          Length = 840

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/903 (39%), Positives = 541/903 (59%), Gaps = 93/903 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++    +K + K
Sbjct: 7   DKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY AL  MAQ WS+R +L++G GNFGS+DGD  AA RYTE 
Sbjct: 67  SARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNGG GIAVGMATNIP H
Sbjct: 127 RLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EV+   V +IDN         ++ +++II+GPDFPTGA ILG  GI+ AY TGRG I
Sbjct: 187 NLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTRGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V++IE     +  I+VTE+PY VNKA ++EKIAELV+ K+I  I  + DES+R+G 
Sbjct: 247 RVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREGI 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  +A+V+LNQL ++T LQ  F V M+AL   +P+   ++ +L+ ++  +++V
Sbjct: 307 RINIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALVNNEPKVLNILQMLEYYLDHQKDV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA +RAH+L GL  A+ ++DEV+RIIR S N   A+R LM+R        
Sbjct: 367 VTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q +AI+++RL  LTGL R+ + NE   L  +I E  
Sbjct: 419 ------------------FELTDPQAQAIVDMRLRALTGLEREKLENEYKELEAKIAELR 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+  ++LLG+IK+E+L + ++    RRT+I     DM  ED I  +D V+ +++LGY+
Sbjct: 461 AILADENKLLGVIKKEILVISEKYGDDRRTKIGFE-DDMSVEDLISDDDTVIAMTNLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +++Q RGGKG  G+   DEDF+ DL + + H  ++FF++ G  Y+ K + +P 
Sbjct: 520 KRMSVDNFKSQNRGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A++N+L L  GE++T  +P  E +   ++ Y+  ATK G V++ ++ ++  +
Sbjct: 580 AGRTARGTAIVNLLQLQPGEKVTAAIPMREID---DDKYLFMATKGGMVKKTRMCEYSNM 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DI L TK G  +RF  +  R+  GR S GV G+ 
Sbjct: 637 RKTGLQAILLREGDELIEVKVTDNTEDIFLATKFGMSIRFKETDARI-TGRVSYGVIGMK 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI M +    +                                           
Sbjct: 696 LDEGDEVIGMQMASQGE------------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  SEKG+GKRT   +F++  R GKG+   +V++  + G LV +  ++
Sbjct: 713 ----------YMLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTE--KTGNLVGMKLLD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRESEIVDEA 906
           D   I+L++++G LIR+ V++I I  R T GV + S     D RV S+ ++RES   DE 
Sbjct: 761 DGRDIMLITNEGILIRMGVDDISIIGRNTSGVKLMSIDADSDVRVASIAKVRESSRQDEE 820

Query: 907 EST 909
           +  
Sbjct: 821 DEN 823


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/854 (42%), Positives = 523/854 (61%), Gaps = 29/854 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++  +D                  Y +  DG   LSE Q + IL +RL RLTGL +D I
Sbjct: 422 EMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR  I     +++ 
Sbjct: 482 IGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +
Sbjct: 542 EDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE++T ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKE---FSEDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISG 767
            + +R    RN+ GVRG+ L +G  VI++ +               Y K          G
Sbjct: 719 ENDVRPMG-RNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHG 777

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              +       SS  G +       L +    I+ ++  G   RT   + R   R+ +G+
Sbjct: 778 RGTKGMIAIQTSSRNGRV---VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGV 834

Query: 828 RATDVSKINEIGAL 841
               V   + +  +
Sbjct: 835 TLISVDDGSSLSGV 848



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 14/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+ PLS +   R+   G   V + D D++    
Sbjct: 640 EKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKA--GIIAVDLDDGDYLIGAD 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  + L +G+ +  ++   ++  
Sbjct: 698 LTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG---VRGMMLEEGQTVIALLVAGDETQ 754

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
           S     V+ AT++G  +R  ++++ +  R  K  + + +      ++        ++I+L
Sbjct: 755 S-----VLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIML 809

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  ++ IR    R + GV  IS+  G  +  +  V+ +
Sbjct: 810 ITTGGVLVRTRVAEIREMG-RATQGVTLISVDDGSSLSGVRRVVES 854


>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
 gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
          Length = 823

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 536/895 (59%), Gaps = 84/895 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ S  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++     E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF    +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLM-KRAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++ + +                                       
Sbjct: 691 RGIKLNAGDVVVGAGVLNNDE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIR 898
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIP 813



 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 91/260 (35%), Gaps = 26/260 (10%)

Query: 656 NVRRNKLSDFIQ----INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
            + +++L D  +      RS       D   E    +    E  ++  TK G   R   +
Sbjct: 468 QIIKDELDDMKKKYGDPRRSEITIDTSDLDVE----DLIADEEMVITLTKQGYIKRMNAN 523

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLH--------ADADYDERICYMKHMSAQRR 763
             R    +   GV G+   + D V  +  V          +         Y    +  R 
Sbjct: 524 VYR-NQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRN 582

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                   +  L    SV   I  ER  E    +  +  V+E G  KRT+  ++R   RS
Sbjct: 583 SRGTAMVNVLPLAVGESVTTMIDLERVHE----DVNLFMVTEFGVVKRTAIEEYRNIRRS 638

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G  + A ++ + +    L++V     N  I++ +  G  IR   +++R+  RA  GV   
Sbjct: 639 G--LNAINLDEGDR---LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGI 693

Query: 884 STAKDERVVSVERIRESEIV 903
                + VV    +   E  
Sbjct: 694 KLNAGDVVVGAGVLNNDESE 713


>gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
 gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
          Length = 901

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/875 (42%), Positives = 540/875 (61%), Gaps = 49/875 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P++ ++ LME I GPDFPT A+I G+ GI+ AY TGRG  ++R  
Sbjct: 186 NLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKAIMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +QS F +NMVAL   +P+ F L  +L+AF+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L  LA+A+AN+D ++ +I+ S +P  A+  L+ + W    +K +++ 
Sbjct: 366 VYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +++E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  + ++    RRT I    +D+  ED I  ED+VVT+SHL
Sbjct: 486 GLLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDISLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ ++N+L L +GERIT I+P  E E      Y++ AT HG V++  L+++
Sbjct: 606 LPLASRQARGRPIVNLLPLQEGERITAILPVREYEE---GKYILMATSHGTVKKTALTEY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
            +   +G IA+ L   D+++ V+     ++I+L +  G+ VRF                 
Sbjct: 663 SRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRGI+L +G +V+S+ +      +L   A+   +   +
Sbjct: 723 DEEGKPQINFKGVRPMGRGATGVRGIALEEGQRVVSLIVPKDDSAILTVTANGFGKRTEL 782

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
               A+ R   G      + +N   V      E           I+ +S+KG   RT + 
Sbjct: 783 AEYPAKSRATKGVVSIKVTERNGPVVGAVQVGE--------NDEIMLISDKGTLVRTPAI 834

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
              I  R+ +G+     +    +  L  +  + D+
Sbjct: 835 GVSIIGRNTQGVTIIRTADDETVVGLQRIDEIQDD 869



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 110/283 (38%), Gaps = 34/283 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           ++  +  G VK+  L+ Y   R    G   V ++D D +  + 
Sbjct: 628 ERITAILPVREYEEGKYILMATSHGTVKKTALTEYSRPRS--NGIIAVNLKDGDQLIGVD 685

Query: 582 IVSTHTSVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI------------- 621
           I    + ++ FS  G V + K       V           GK  IN              
Sbjct: 686 ITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLDEEGKPQINFKGVRPMGRGATGV 745

Query: 622 --LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMK 677
             ++L +G+R+ +++   +D +      ++  T +G  +R +L+++   +R+  G +++K
Sbjct: 746 RGIALEEGQRVVSLIVPKDDSA------ILTVTANGFGKRTELAEYPAKSRATKGVVSIK 799

Query: 678 LDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +      ++      + ++I+L +  G  VR P   + +   RN+ GV  I  A  + V+
Sbjct: 800 VTERNGPVVGAVQVGENDEIMLISDKGTLVRTPAIGVSIIG-RNTQGVTIIRTADDETVV 858

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            +  +     D  E +      +    +   DT+      +++
Sbjct: 859 GLQRIDEIQDDGSEYLEEGVEGAEGDIIAEADTQPTDDANDEA 901


>gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 911

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/888 (38%), Positives = 495/888 (55%), Gaps = 76/888 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V +T E+QNS+L YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 37  RVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRGWNKC 96

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L+ GQGNFGS   D  AA RYTECR
Sbjct: 97  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRYTECR 156

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ + TVDF+PNYD    EP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 157 MAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNIPPHN 216

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     +++P+   + L    M  ++GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 217 LREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIVGRKGIEDAYRTGRGSVTM 276

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V +IE+    R ++VVTE+PY  N   + +KIA+LV   R+  I+D+RD+S  R G R
Sbjct: 277 RAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSARTGQR 336

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I LKR A   V++N LY++T LQ  F  NM+AL    P    L   ++ +V  + EV+
Sbjct: 337 LAIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVDNVPRTLRLDQFIRYWVLHQIEVI 396

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L +A   AH+  GL  A+  LDEV+ +IR SP  E A   L +          
Sbjct: 397 VRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQASAGLQK---------- 446

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +++  L   I +  D
Sbjct: 447 ----------------LLDIDDVQAAAILNMQLRRLAALERQKIIDKMKELDTLIADLKD 490

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R R   I+  EL  +  +    RRT+I+    D  DED I  +DMVVT++  GY K
Sbjct: 491 ILANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDDDMVVTITRGGYAK 550

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR QRRGGKG  G  +R +D V  LF  + H  +LFF+  G VY+ K W+LP G
Sbjct: 551 RTRTDQYRPQRRGGKGVRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQLPEG 610

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +  +LS    E+I  ++     E +    Y+V ATK G V++  LS +    
Sbjct: 611 GRDAKGGHVAGLLSFLPDEKIAQVLALRSYEDAE---YLVLATKQGLVKKTALSAYDSPR 667

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E     +D+LL ++LGQ +RF     ++   GR + GV G+
Sbjct: 668 QAGLIAVNFRADDDELIGAELVDASDDVLLISRLGQAIRFRADDEQMRPMGRTTSGVTGM 727

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD+++SM++V                                      +  G  S+
Sbjct: 728 RFREGDELLSMSVV-------------------------------------PAERGEASD 750

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           E   E + +  ++ TV+  GF KRT   D+R+ NR G GI+A  +   +E G LV    V
Sbjct: 751 EHADE-EDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMD--DERGHLVGGLVV 807

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            D+D++I +   G + R  V E+    R T GV        + V+++ 
Sbjct: 808 TDSDEVIAIKASGQVTRSSVAEVNPTGRDTMGVKFVGVRGKDEVIAIA 855



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 15/231 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         + +V  +  G VK+  LS Y + R+ G   +     D+D +    
Sbjct: 629 EKIAQVLALRSYEDAEYLVLATKQGLVKKTALSAYDSPRQAGL-IAVNFRADDDELIGAE 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-- 639
           +V     VL  S LG   + +        P  R  + +  +   +G+ + ++   P +  
Sbjct: 688 LVDASDDVLLISRLGQAIRFRADD-EQMRPMGRTTSGVTGMRFREGDELLSMSVVPAERG 746

Query: 640 -------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVET 689
                  +     LYV   T  G  +R  + D+   NR G     +   DE   ++    
Sbjct: 747 EASDEHADEEDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMDDERGHLVGGLV 806

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            T  ++++     GQ  R  ++ +    GR+++GV+ + +   D+VI++A+
Sbjct: 807 VTDSDEVIAIKASGQVTRSSVAEVNP-TGRDTMGVKFVGVRGKDEVIAIAL 856


>gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
 gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
          Length = 896

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/908 (38%), Positives = 516/908 (56%), Gaps = 95/908 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ 
Sbjct: 36  ESGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 95

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS   DP AA RY
Sbjct: 96  YNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRY 155

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 156 TECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNI 215

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HN+ EV +G    +++PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG
Sbjct: 216 PPHNMREVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRG 275

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
            I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R
Sbjct: 276 LITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGR 334

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  +
Sbjct: 335 TGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQ 394

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM+      
Sbjct: 395 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME------ 448

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + +VQ  AIL ++L  LT + RD I  E   L  +I 
Sbjct: 449 --------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIA 488

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + +DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H 
Sbjct: 489 DYIDILAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEENVVVTVTHS 548

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 549 GFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYE 608

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP GS  ++G+ + N+L     E I  ++  P  E +    Y+V AT+ G V++  L+++
Sbjct: 609 LPEGSRDSKGQHVANLLQFAPDESIQAVLSIPNYEVA---KYLVLATRSGKVKKTPLAEY 665

Query: 666 IQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
               + G IA++L +       DE++    C  E+DI+L +KLG  ++F  +  ++   G
Sbjct: 666 DSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMG 725

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G+   +GD++++M +V                                     
Sbjct: 726 RQTAGVQGMKFREGDELLAMDVVWGD---------------------------------- 751

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             ++ +  V+ +GF KRT+  ++R+  R+G GI+A  + +    
Sbjct: 752 -----------------SDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEG--R 792

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+LV    V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  
Sbjct: 793 GSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDEILSIARNE 852

Query: 899 ESEIVDEA 906
           E +  +E 
Sbjct: 853 EKDDPEEE 860



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 103/265 (38%), Gaps = 13/265 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+ PL+ Y + R+GG     ++  +     D +
Sbjct: 631 ESIQAVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADEL 690

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +   +G+ +  +    
Sbjct: 691 IGAALCNAEDDIILVSKLGMSLKFQAND-EQLRPMGRQTAGVQGMKFREGDELLAMDVVW 749

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K    ++ R  ++     ++++
Sbjct: 750 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGSLVGALVVSEDD 805

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++   K G+ +R  +  ++   GRN+ GV      KGD+++S+A     D   +E    
Sbjct: 806 QVMAIMKSGKVIRSNVDEVK-RTGRNTQGVTFAKPDKGDEILSIARNEEKDDPEEEVADN 864

Query: 755 MKHMSAQRRLISGDTEEITSLKNDS 779
               + Q      +    T+   ++
Sbjct: 865 GTAEAGQSPAEPVNESNETAQSGEN 889


>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
 gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
          Length = 796

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/882 (41%), Positives = 540/882 (61%), Gaps = 89/882 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V +T+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + GV +++ Y K AR
Sbjct: 4   IDVDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSAR 63

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMGKYHPHG+ AIYD + RMAQD+S+R  LI+GQGNFGSVDGDPPAA RYTE RL 
Sbjct: 64  IVGDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLS 123

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  +L D+ KDTVDF PNYDGS +EP VL +R PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 124 KIAGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLR 183

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVV   + +I+NPD  +  LM  IRGPDFPTG  I+GR+GI++AY+TGRG+I IR  S I
Sbjct: 184 EVVYALIHLIENPDASVTDLMNFIRGPDFPTGGYIVGRSGIESAYSTGRGTITIRARSEI 243

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+      +I+ TE+PYQVNKA ++E IAELV+  R+  I+++RDESDR+G R+V+ELK+
Sbjct: 244 EEGRRG-SRIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELKQ 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G +  V+LNQL+++T L++ + +  + L   +P   TL   L+ ++ +R EV+ RRT++ 
Sbjct: 303 GVNPQVVLNQLHKHTQLETTYGIINLVLVDGQPRTLTLKETLEQYINYRAEVIERRTRFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L +A  RAH+L G+ IA+ ++DEV+ +IR SP+P  AR  LM R                
Sbjct: 363 LEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNR---------------- 406

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q RAIL++RL RLTGL ++ + +E   L   I     IL+SR+ 
Sbjct: 407 ----------FGLSEEQARAILDMRLQRLTGLEQEKVASEARELESTIARLKGILASRTE 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L IIK EL  + +     RRT I+E +  +  ED I  E++ V +++ GY+KR PLSVY
Sbjct: 457 VLDIIKNELRELDEIYGDDRRTEILESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGGKG  G   + EDFVTD+F  ST   ++ F+  G  +  +V+ +P+ S  ARG+
Sbjct: 517 RMQRRGGKGSIGAETKSEDFVTDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGR 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + ++L L + ERIT  +P    ES   + Y+V AT++G++ +  L  F    R G  A+
Sbjct: 577 PIASLLQLEENERITEAIPV---ESFGTDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAV 633

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D +++        ++++ TK G+ +RF  S +R  +GR S+GV+ I+L++GD++I
Sbjct: 634 NLR-GDSLVAARLTDGSRELIVATKKGKAIRFHESDVRS-SGRGSMGVKAINLSEGDELI 691

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM                                                     ++  +
Sbjct: 692 SM-----------------------------------------------------DVVKE 698

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            + + T++ +G+GKRT   ++ +  R GKG++  D       G +VA   V+D+D +++ 
Sbjct: 699 GETLFTITTQGYGKRTELSEYPLQRRGGKGVKNIDT----RRGDVVAAITVSDDDGLLIT 754

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +G +IR+  +++R+  RAT+GV I      + +  V R+ 
Sbjct: 755 TKEGVMIRIAASDVRVQGRATQGVKIMDVKPGDEISDVARVD 796



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 111/287 (38%), Gaps = 14/287 (4%)

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN--VRRNKLSDFIQINRSGKIAMK 677
             L+  + E++ +     E ES+   L  + A++     + +N+L +  +I    +    
Sbjct: 423 QRLTGLEQEKVAS--EARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDDRRTEI 480

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+S + +   +    E   ++ T  G   R P+S  R    R   G  G      D V  
Sbjct: 481 LESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVYR-MQRRGGKGSIGAETKSEDFVTD 539

Query: 738 MAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +      D      D    +   +     +         +          I+E    E  
Sbjct: 540 IFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVESF 599

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +++I+  +  G   +T    F    R G  I+A ++       +LVA    + + ++I
Sbjct: 600 GTDEYIVLATRNGSIVKTPLRAFSNPRRGG--IKAVNL----RGDSLVAARLTDGSRELI 653

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + + KG  IR   +++R + R + GV   + ++ + ++S++ ++E E
Sbjct: 654 VATKKGKAIRFHESDVRSSGRGSMGVKAINLSEGDELISMDVVKEGE 700


>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 821

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/903 (41%), Positives = 536/903 (59%), Gaps = 84/903 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG+ ++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I +E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++     E    N+ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHENVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +R     +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLM-KRAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLKTGDVVVGAGVLESDE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+G+GKR  +  + +  R G G +   ++  ++ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIE 818

Query: 904 DEA 906
            E 
Sbjct: 819 SED 821


>gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 887

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/902 (43%), Positives = 542/902 (60%), Gaps = 75/902 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W ++ + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P  S  ARG+ L+N+L                                     
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLL------------------------------------- 624

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L D   I               +L VE  T+ + I + T  G   + P+     F+ +
Sbjct: 625 -PLDDGEYIT-------------TMLPVEEYTEGHYIFMATANGTVKKTPLE---SFSRQ 667

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            SVG+  + L +GD +IS AI      D +  +          R    D   +       
Sbjct: 668 RSVGLIALELDEGDVLISAAIT-----DGEREVMLFSDGGKVTRFKESDVRAMGRTARGV 722

Query: 780 SVEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                   ++   +    +   ILT SE+G+GKRT+  +F    R G+G+ A   ++ N 
Sbjct: 723 RGMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERN- 781

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV    V D ++I+L+SD+GTL+R  V+E+    R T+GV +   AKDE +V +ER+
Sbjct: 782 -GRLVGAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERV 840

Query: 898 RE 899
           +E
Sbjct: 841 QE 842



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 109/270 (40%), Gaps = 15/270 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M   +       +   +  G VK+ PL  +  QR    G   + + + D +    
Sbjct: 630 EYITTMLPVEEYTEGHYIFMATANGTVKKTPLESFSRQRS--VGLIALELDEGDVLISAA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      V+ FS  G V + K   +      ARG   +  + L +G+++ +++  PE+ S
Sbjct: 688 ITDGEREVMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IPEEGS 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILL 698
                 ++ A++ G  +R  +++F +  R G   IAM  +     ++         +I+L
Sbjct: 744 Q-----ILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR  +  +     RN+ GV  I LAK + ++ +  V        E +   + +
Sbjct: 799 ISDQGTLVRTRVDEVSSLG-RNTQGVTLIKLAKDETLVGLERVQEPSEVEGEELEGEEGV 857

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +  +I  + ++        + +   S++
Sbjct: 858 ELEDGVIGAEPDDAVDNLQADAADEEESQD 887


>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
 gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
          Length = 815

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/898 (41%), Positives = 554/898 (61%), Gaps = 85/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTG+ +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+I++TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+ +         
Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++RL RLTGL RD I  E + L   I +  D
Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K ELL VK++    RR+ I+EG +D +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSIIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +    N  ++F+TK+G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTN--LIFSTKYGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R    R S GV+GI+
Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMG-RVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V  +                                            
Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + E  ++ 
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEESYEDE 815


>gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 836

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/903 (40%), Positives = 544/903 (60%), Gaps = 89/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 9   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 69  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT  +V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+++    Y+ F T++G V+R   S F  I  
Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAA---KYLFFTTRNGIVKRTSTSQFSNIRT 639

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R    R + GV+G++L 
Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDMG-RAAAGVKGVNLR 698

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +  +                                              
Sbjct: 699 EGDYVVGTSRIDDS---------------------------------------------- 712

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +    E E VD  E
Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 823

Query: 908 STE 910
            T+
Sbjct: 824 LTD 826


>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/892 (42%), Positives = 535/892 (59%), Gaps = 86/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I +V+I ++M  +YL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M QMG++ N+ Y KC
Sbjct: 5   NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A   GEV+  YHPHG+A++Y+AL RMAQ WS+R  L+ GQGNFGS D DPPAA RYTE +
Sbjct: 65  AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF PNYD   +EPVV  AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ DG + +I+NP+   + L  I+RGPDFPTG +I GR GI+N YA GRG IVIR  +
Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLIQGREGIRNTYANGRGRIVIRART 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE+    R  I+ TE+PYQVNKA +++KIAEL R+KRI  I+++RDESDRQG R+V+EL
Sbjct: 245 HIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+   ILN L++YT++QS F+ NM+AL   +P+  TL   L+ ++  RE+V+ RRT+
Sbjct: 305 KRDANPRSILNSLFKYTAMQSSFNTNMLALVDSQPQTLTLKKFLQHYITHREQVITRRTQ 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA  R H+L GL IA+ NLDEV+ IIR S            R   A   ++L    
Sbjct: 365 FELRKAEARKHILEGLKIAMDNLDEVINIIRGS------------RRETAGLAEEL---- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   S  Q RA+L++RLA L  L R  + +EL  +   I     +LS  
Sbjct: 409 ---------QQTFGFSNEQARAVLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDI 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + + GII  +L  +K++    RRT I E  + D +DED I  E++VVT++  GY+KR+P 
Sbjct: 460 NEIRGIIMADLKELKEKFGDARRTEIEEGEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPS 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQRRGG+G +G+  R++D V  L +  TH S+LFF+  G V++ +V+ LP  S  A
Sbjct: 520 GTYRAQRRGGRGVTGMATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTA 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ LIN++S+ Q ER+T I+  P       + ++V ATK G V++  +SDF  + RSG 
Sbjct: 580 RGEHLINLISIEQRERVTAIVYVP---KGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAM L+  DE++  +    E D+LL T  G  +RF +  +R  A R S GVRGI L   D
Sbjct: 637 IAMNLEDDDELIGAKLVGPEADVLLITLHGHAIRFGVDQLRS-ASRTSGGVRGIRLTDDD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S+  V+                                                   
Sbjct: 696 TVVSLNAVIPGG------------------------------------------------ 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-Q 852
                 +L V+E G+GKRT   ++   NR G G+  + V++  + G + +   V + D  
Sbjct: 708 -----ELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTE--KTGKVASARMVTEEDND 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L+S  G +IR  V+ +R A RAT+GV + + A+D++VV+V      +  D
Sbjct: 761 LMLISASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAVAVANGKKTDD 812



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 107/265 (40%), Gaps = 16/265 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         D +V  +  G VK+  +S +   RR   G   + + D+D +    
Sbjct: 594 ERVTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRS--GLIAMNLEDDDELIGAK 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V     VL  +  G   +  V +L   S  + G   I +   +    +  ++P  E   
Sbjct: 652 LVGPEADVLLITLHGHAIRFGVDQLRSASRTSGGVRGIRLTDDDTVVSLNAVIPGGE--- 708

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE----TCTQENDIL 697
                 ++  T+HG  +R  + ++   NR G   +     ++   V        ++ND++
Sbjct: 709 ------LLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASARMVTEEDNDLM 762

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G  +R  +S +R  AGR + GV  ++LA+ D+V+++A+      D +E+      
Sbjct: 763 LISASGVVIRTDVSLVRQ-AGRATQGVTLMNLAEDDKVVAVAVANGKKTDDEEKAEAEVV 821

Query: 758 MSAQRRLISGDTEEITSLKNDSSVE 782
              +  +   +     +++ D    
Sbjct: 822 EGEETAITEVEEVIPDAIEEDEETS 846


>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
 gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
          Length = 885

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/893 (40%), Positives = 539/893 (60%), Gaps = 47/893 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   ESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ      +L D+  +TVDF  N+DGS QEP+VL +R P + +NG  GIAVGMATNIP
Sbjct: 125 CRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG VA+I N +I  + L++ I GPDFPTGA ILG++GI++AY  GRGSI +R
Sbjct: 185 PHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQILGKSGIRDAYTLGRGSITMR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        D+E I+VTE+PYQ NKAA++EKIAELV +K+I  I+D+RDESDR G
Sbjct: 245 GVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRNG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQ+ F  N++AL   +P+  TL   L+ F+ FR E
Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSEPQLLTLKKYLEVFLEFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+ NLDE++++IR + +   A++EL++        
Sbjct: 365 TITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIEN------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ+ AIL+++L RLT L    I+ E   L ++I + 
Sbjct: 418 -------------------YGLSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ E + +K+   TPRRT I     +++D D I  E  ++ ++  GY
Sbjct: 459 QDILAKRERILEIIETEAIEIKERHATPRRTVIELAEGELDDTDLIANEKAIILLTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ R  +G+SG  M+++D V        H S+LFFS  G VY    +++P
Sbjct: 519 IKRMPVNSFEAQSRATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           IGS  ARG  ++ +L + + E++T+I+   E     ++ Y+V  TK G +++  LS F  
Sbjct: 579 IGSRVARGVPIVQMLPIPRDEKVTSIVAVSE---FTDDKYLVMLTKGGYIKKTSLSAFAN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726
           I  +G IA+ L   D +  V     ++ +++ +  G  + F     ++   GRN+ GV+ 
Sbjct: 636 IRSNGLIAISLGEGDSLRWVRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPLGRNTRGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L KGD++ISM I+  +  +    I        +  L     E      ++ +   NI 
Sbjct: 696 MKLIKGDELISMDILPSSIVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNNI- 754

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF- 845
                       ++L ++  G+GKR     F + NR GKG  AT   +  +    VA   
Sbjct: 755 ----------GSWVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAALR 804

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN+++++++++ KG +IR  ++ I I SR+  GV +      + +  V  + 
Sbjct: 805 VVNESEELMIITAKGIIIRQAIDAISIQSRSATGVRVQKLDDADAIAEVALVP 857


>gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
          Length = 812

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/886 (41%), Positives = 544/886 (61%), Gaps = 86/886 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S EE    I  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q  +  
Sbjct: 2   SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A I G+V+GKYHPHG+ A+YDAL +MAQD+S+R  L++G GNFGS+DGD  AA
Sbjct: 62  DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R++K +  +L DL K+TVD  PNYD +  EP VL ARYPN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+IP HNLGEV+D  V +IDN D  L+ +++ I+GPDFPTGA I+G + +  AY TGRG 
Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIMGNSSMLQAYRTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V R  +  E+ SG + +IVVTEIPYQVNKA ++EKIAEL+++KRI  I  + DES+R+G
Sbjct: 242 VVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIEL+R  + D++LNQL++++ LQ +FS+ M+AL    P+  TL  +L+ ++  +EE
Sbjct: 302 MRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNNIPKVLTLEQMLRLYLKHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA+DR H++ GL  A+ ++DEV+ IIR S +   A   LM+R       
Sbjct: 362 VVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYS--DAMERLMER------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 SE+Q +AIL+++L RL GL ++ + +E   L  +I   
Sbjct: 413 -------------------FDFSEIQAKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYY 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +ILS RS LL IIK+E+L +K +    RRT  +    D++ +D I  +++ VT++HLGY
Sbjct: 454 QEILSDRSLLLSIIKEEILEIKAKYGNERRTTFLASYEDIDIKDMIPDDEVTVTLTHLGY 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV +  Y+ Q+RGGKG + +  RDEDFV  L + S H+ V+FF+++G +Y+   + +P
Sbjct: 514 IKRVGIDTYKTQKRGGKGIASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIP 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  ++NIL L  GE++ T++   E+++S    +VV  T+ G +++  L +F +
Sbjct: 574 ESSRTAKGTNIVNILPLEDGEKVNTMLSIREEQASSG--FVVMCTRKGIMKKTPLEEFQR 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            NR+G IA+ L   DE++ VE      +I+   + G+ + F  S IR    R + GVR +
Sbjct: 632 SNRNGLIAISLKEDDELIGVELTDGNCNIICVARNGKAIMFDESDIRSMG-RTAQGVRAM 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+++SM I                                               
Sbjct: 691 NLEEGDEIVSMMIADPE------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + +L +SE+G+GKRT   ++ +  R GKG R   +++  + G LV    V
Sbjct: 708 ----------KDVLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITE--KTGRLVGGKVV 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +++D+I++V+  GTLIR+ V  I + SR T GV +  TA+++ + S
Sbjct: 756 SNDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMKTAENQDIAS 801


>gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/860 (43%), Positives = 533/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVRE---FLADKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L  G QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315]
 gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315]
          Length = 867

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/855 (41%), Positives = 525/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI++ +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGMIAIQTSERNGKV---VAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/854 (43%), Positives = 546/854 (63%), Gaps = 30/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H LL D+ K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ +++NPD D++ L+ +++ PDFPT A+I G +G+ + Y TGRG +V+R  
Sbjct: 186 NLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAALIYGLSGVHDGYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H E    G+R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+++RDESD+ G RVVI
Sbjct: 246 THFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +V+LN L++ T LQ  F +NMVAL   KP    L  +L  F++ R EV+ RR
Sbjct: 306 ELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGKPRTLNLKQMLDCFLSHRREVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W+++ +++++ 
Sbjct: 366 TVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVEEMLA 425

Query: 433 LIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               +SY   S             LS+ Q +AILELRL RLTGL +D I  E   +   I
Sbjct: 426 RALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREVMDVI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL++  R+  II +EL +++ + D PRR+ IV    ++  ED I  EDMVVT+SH
Sbjct: 486 TDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIEDLIAPEDMVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY KR PL+ YRAQRRGG+G+    M+D+DF+  LF+ +TH  +L FSS G VY  KV+
Sbjct: 546 AGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGRVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G+  +RG+ ++N+  L +GE+I  ++P    ++  ++ +V  AT  G V++  L+ 
Sbjct: 606 EVPEGTRNSRGRPIVNLFPLMEGEKINAVLPV---QAFDDDHFVFMATAEGTVKKTALTA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    ++G IA  LD  D ++ V      +D++L +  G+ VRFP   +R    R + GV
Sbjct: 663 FSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRPMG-REARGV 721

Query: 725 RGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           RG++L +G +VI+M +       VL A  +   +   +   +   R   G     TS +N
Sbjct: 722 RGMNLEEGQRVIAMLVAKDEELSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN 781

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              V   + EE           ++ +S  G   RT   D R   R+ +G+   ++ +   
Sbjct: 782 GKLVGACLVEE--------SDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEGTS 833

Query: 838 IGAL--VAVFPVND 849
           +  +  VA   V++
Sbjct: 834 LAGIEKVAESEVDE 847



 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 101/235 (42%), Gaps = 14/235 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+  L+ +   R+   G     + D D +  + 
Sbjct: 629 EKINAVLPVQAFDDDHFVFMATAEGTVKKTALTAFSNPRKA--GIIAANLDDGDRLIGVA 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I   ++ V+ FS  G   +     +     +ARG   +  ++L +G+R+  ++   ++E 
Sbjct: 687 ITDGNSDVMLFSDAGKAVRFPEGDVRPMGREARG---VRGMNLEEGQRVIAMLVAKDEE- 742

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILL 698
               L V+ AT++G  +R  ++++ +  R  K  + + + D   +++      + ++++L
Sbjct: 743 ----LSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGACLVEESDEVML 798

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            +  G  +R  +  IR    R + GV  I+L +G  +  +  V  ++ D      
Sbjct: 799 ISTGGVLIRTRVQDIRELG-RATQGVTLINLDEGTSLAGIEKVAESEVDEPAADV 852


>gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100]
          Length = 836

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/903 (37%), Positives = 515/903 (57%), Gaps = 92/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +   ++ +  + +  EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDTTGGENLFDR-VEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG+ AIY  L RMAQ W++R  L++GQGNFGS 
Sbjct: 60  YDNGYRPERGYVKSAKPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ ++ ++TVDF+PNYDG  +EPV+L +R PN+L+NG G
Sbjct: 120 GNDGAAAMRYTECRMTPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    ++DN + +        M+ ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLNELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +RGV+ IE+  G+R+ IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 240 IQDAYRTGRGSIRMRGVTSIEEE-GNRQVIVITELPYQVNPDNLVHNIAEQVRDGKIAGI 298

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DES DR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 299 ARIDDESSDRVGLRIVVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 359 QMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDIARE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + E+Q  AILE++L RL  L R  I +
Sbjct: 419 GLID--------------------------LLDIDEIQANAILEMQLRRLAALERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            L  +   I +  DIL+   R   I++ EL  + ++    RRT+IV    D+ +ED I R
Sbjct: 453 ALAEIEETIADLKDILARPERQRDIVRGELEEIVEKFGDERRTKIVAASGDVSEEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR+QRRGGKG  G  ++ +D V   F+ STH ++LFF++ 
Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNF 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ + + LP  S  ARG+ + N+L    GE+I  ++     +S  +  Y+V AT HG
Sbjct: 573 GRVYRLRAFELPEASRTARGQHVANLLEFQPGEQIAQVIQI---QSYEDAPYLVLATSHG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+      G IA+ L+  D ++  + CT E+D+LL ++ GQ +RF      +
Sbjct: 630 RVKKSRLTDYDSPRSGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVL 689

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+   + DQ++++ +V                                 
Sbjct: 690 RPMGRATAGVKGMRFREDDQLLALTVV--------------------------------- 716

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                ++ ++   +  G+GKRT   ++    R G G+      K
Sbjct: 717 --------------------QEDAYLFVATSGGYGKRTKMEEYPAKGRGGLGVVTFKYDK 756

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    V ++D+I+ ++  G +IR  VN+IR  SRAT GV +    KD  +V+V
Sbjct: 757 --KRGKLIGALTVQEDDEILAITSAGGVIRTEVNQIRHTSRATMGVRLVDLGKDVELVAV 814

Query: 895 ERI 897
           +R 
Sbjct: 815 DRN 817


>gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868]
 gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868]
 gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 841

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 546/905 (60%), Gaps = 86/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  NKK
Sbjct: 3   KEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 63  YLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K +  +L DL K+TVDF+ N+D S QEP VL  + PN+LVNG  GIAVGMATN+
Sbjct: 123 TEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E VD   A IDN +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+
Sbjct: 183 APHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+  G+R  I+VTEIPY VNKA M+ + +ELV+E +I  I ++RDESDR+G RV
Sbjct: 243 RAKVAFEEI-GNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +P++  L  I+  FV  R E+V+
Sbjct: 302 VYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           RRT+Y L KAR+RAH+L G          LD+ + IIR S  P+ A+  L+         
Sbjct: 362 RRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAE------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS++Q +AIL+LRLARLTG+  D IR+E  ++   I + 
Sbjct: 415 -------------------FELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++ +R   IIK ELL VK++    RRT I     +M  ED I  E++V+T+SH GY
Sbjct: 456 EDILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  Y  +V+ +P
Sbjct: 516 IKRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDF 665
            GS  A+G+A+ N++++   ++I   +   +  D      +YVV  TK+G +++  L  +
Sbjct: 576 EGSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAY 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G  A+++   D++L        ++I++ TK G+C+RFP    R    R S+GVR
Sbjct: 636 SRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARAVG-RTSIGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL   D+VI M +V                                            
Sbjct: 695 GISLEDNDEVIGMIVVND------------------------------------------ 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                    ++ + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+ 
Sbjct: 713 ---------MENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQ 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D + +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++   + V++
Sbjct: 762 SVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVED 821

Query: 906 AESTE 910
            E  E
Sbjct: 822 EEIEE 826



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V++  VV ++  G +K+  L  Y   R    G   + +R++D +    + + ++ ++  
Sbjct: 612 YVKQMYVVMITKNGTIKKTSLEAYSRPR--TNGIHAIEIREDDQLLGARLTNGNSEIMIA 669

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    +       + G   +  +SL   + +  ++   + E    N  V+  +
Sbjct: 670 TKNGKCIRFPEEKARAVGRTSIG---VRGISLEDNDEVIGMIVVNDME----NETVLVVS 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + D+   NR GK  + L+  ++   ++++++    ND+++  K G  +R  
Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMS 782

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RV   RN+ GVR I+L   D++ ++A V       DE I      +      + + 
Sbjct: 783 VDNMRVMG-RNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSEE 841


>gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
 gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
          Length = 855

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/917 (38%), Positives = 513/917 (55%), Gaps = 83/917 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I     E   I  V + DEMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTPI-----ERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+RI G+VMG+YHPHG+ AIYD L R+AQ W +R  +I GQGNFGS 
Sbjct: 56  YDGGYRPDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSP 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTEC+L   A  ++ D+ ++TVDF+PNYDG   EP VL +R PN+LVNG  
Sbjct: 116 GDDPAAAMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSA 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    + +P+         L+E I+GPDFPT  +I+G +G
Sbjct: 176 GIAVGMATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGTSG 235

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGS+ +R +  IE+ +  R Q+VVTE+PYQVN  +++ KIA+LV   R+  +
Sbjct: 236 IEDMYRTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGV 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +DLRDE S R G R+VIE++R A A V+LN LY++T LQS FS NM+AL    P   TL 
Sbjct: 296 SDLRDESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDDVPRTLTLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G +  ++  + +V+ RRT+Y L KA +RAH+  GL  A+  LD+V+ +IR SP  + AR 
Sbjct: 356 GFITNWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AILE++L RL  L R  I +
Sbjct: 416 GLIE--------------------------LLEIDEIQANAILEMQLRRLAALERQKILD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L   I +  DIL    R   I+  EL  + D+    RR+RI+    D+ DED I  
Sbjct: 450 ELAELERMIADFTDILERPERQREIVSTELAEIVDKYGDDRRSRIIPADGDLSDEDLIPD 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR    +YR Q RGGKG  G  +RD DFV  LF  + H  +LFF++ 
Sbjct: 510 EEVVVTITSGGYAKRTKTDLYRVQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTA 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     A+G  +  +LS    E+I  ++   + E +    Y+V AT+ G
Sbjct: 570 GRVYRAKAYHLPEAGRDAKGGHVAGLLSFQPDEQIAQVLAVRDYEQA---PYLVLATRKG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            V++ +L+D+    ++G IA+   D  DE++  E    ++D+LL ++  Q +RF     +
Sbjct: 627 LVKKTRLTDYNSPRQAGVIAINFRDDDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQ 686

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +   GR + GV G+     D ++SM ++                   +R   + D EE+ 
Sbjct: 687 LRPMGRATSGVTGMKFRGEDDLLSMTVI-------------------RREHAALDAEEVA 727

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++ TV++ GF K+T   ++R+  R G GI+A  ++
Sbjct: 728 DEDK--------------------LYVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQIT 767

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                G LV    + D D +I V+  G + R  V+ +    R T GV       D+RVV+
Sbjct: 768 --GARGELVGGLVLKDTDDVISVTSGGQVTRSLVSGVNPTGRGTMGVSFVKFKGDDRVVT 825

Query: 894 VERIRESEIVDEAESTE 910
           + R  E    D AE  E
Sbjct: 826 IARNAEV-AADVAEIEE 841


>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
 gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
          Length = 821

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/903 (41%), Positives = 530/903 (58%), Gaps = 87/903 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE++   +  V +  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N
Sbjct: 2   DEQQFDKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG++++YDA  R+AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF PNYDGS QEP VL A+ PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG V +ID+PD+ LD LM  I+GPDFPTGA ILGR GI  AY+TGRGS+
Sbjct: 182 NIPPHNLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKILGREGILKAYSTGRGSV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE  S  + +IV+TEIPYQVNKA ++E IA+L R K I  I  LRDESDR+G 
Sbjct: 242 KMRSCAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+   + D+ILN+LY++T LQ  F V M+AL    P   TL  +L  ++  R+ V
Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGHPRVLTLREVLAYYLEHRKVV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+KA  RAH+L GL IA+ ++DEV++ IR S   E A+  LM +        
Sbjct: 362 VTRRCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q+ AIL++RL RLTGL RD I+ E   L   I    
Sbjct: 414 ------------------FDLSEKQSIAILDMRLRRLTGLERDKIQEEYAELEKTIDYLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +L+GII+ ELL  K +    RRT+I     ++  ED I  E MV+T++  GY+
Sbjct: 456 SVLADEHKLMGIIRDELLETKKKYADKRRTQIEADTSELNVEDLIPNERMVLTLTRRGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  +VY  Q +GG+G  G+  +DED V  L   S H +VLFF++ G VY+ K + +P 
Sbjct: 516 KRINANVYHTQNKGGRGIKGMATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPE 575

Query: 609 G-SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G A IN+L L+QGE++  ++   + +   N   +  AT+ G V++  L +F  
Sbjct: 576 ANSRNSKGIAAINLLPLSQGEKVNALIDVDQVDPQAN---LFMATERGLVKKTSLQEFSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G IA+ L   D +  V     + +I+L TK G  + F  + +R    RN+ GVRGI
Sbjct: 633 VRRNGLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPMG-RNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +LA+ D VI   I+                                              
Sbjct: 692 TLAEDDMVIGADILAD-------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +LTVSE+GFGKR +   +++  R GKG++   ++   + G +V V  V
Sbjct: 708 ---------DSQVLTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITP--KTGVIVGVEVV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +  ++IL++  G +IR  +  I +   R T GV I    ++++V +++ I      +  
Sbjct: 757 RNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTISVEGSDEPV 816

Query: 907 EST 909
           + T
Sbjct: 817 QDT 819


>gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9]
 gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9]
          Length = 859

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/868 (43%), Positives = 532/868 (61%), Gaps = 34/868 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H+ +      K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDHLFA------KETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WN+ Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGS+
Sbjct: 55  HELSNDWNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL D+ K+TVDF PNYDGS  EP+VL A+ PN+L+NG  
Sbjct: 115 DGDNAAAMRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD  +A++ N D+ +D L++II  PDFPT  +I G  G++  
Sbjct: 175 GIAVGMATNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIYGLAGVREG 234

Query: 241 YATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y +GRG +VIR  +H+E    GDR+ +++ E+PYQVNKA +L KI ELVREK I  I+DL
Sbjct: 235 YRSGRGRVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDL 294

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P    L  IL+
Sbjct: 295 RDESDKSGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQPRLLNLKQILE 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R EVV RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P  A+ ELM 
Sbjct: 355 EFLRHRREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMA 414

Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           R W +  +++++  ++                     LSE Q +AILELRL RLTGL +D
Sbjct: 415 RQWRSPLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQD 474

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +   I + LDIL+   R+  II  EL  +K +    RR+ I     D+  ED
Sbjct: 475 KIVAEYRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGDTRRSEIEPFGGDINLED 534

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GY+K  P++ Y+AQRRGG+G+     +DEDF+ +LF+ +TH  +L 
Sbjct: 535 LITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDFLLC 594

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV+ LP GS Q+RGK ++N+L L +GE+I  I+P    +   +  YV  A
Sbjct: 595 FSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPV---KGFSDTEYVFMA 651

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  LS F     +G IA+ LD  D ++     +  ++++L +  G+ VRF  +
Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    RN+ GVRG+ L    QVI M +       VL A A+   +   +      RR 
Sbjct: 712 DVRPMG-RNARGVRGMELGDAQQVIGMLVSNEETSQVLTATANGYGKRTPIGDYRKSRRG 770

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     T  +N + V           L      ++ ++  G   RT   + R + R+ 
Sbjct: 771 TQGVIAIDTGERNGALV--------AVALVADSDELMLMTTGGVLIRTRVSEVRETGRAA 822

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +G+R  ++    ++ +L  +   ++ D 
Sbjct: 823 QGVRLINLDAGEQLVSLEKIAESDEPDD 850


>gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
 gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
          Length = 845

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 552/906 (60%), Gaps = 89/906 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN DID+D LM  I+ PDFPTG  I G +G+++AY TGRG +V+
Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+
Sbjct: 242 RAKTEIE-SHPTHDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R EVV+
Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIRLFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ+RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FQLTEVQSRAIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++      +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LTNEELCKKVIKDELIEVKEKYGDQRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQHRGGVGSKGSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R    R + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMG-RTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M  + +                                           
Sbjct: 694 LDEDGTDEVIGMICIKNP------------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +E+ I+ +SE G+GKR+   D+R +NR GKG++   +++  + G LVA+  
Sbjct: 712 ---------QEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITE--KTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEI 902
           V D + +++++  G  IR+ V  +RI  RAT+GV +    K ++++ SV ++    E E 
Sbjct: 761 VTDENDLMIINKSGITIRLHVASVRIMGRATQGVRLIDLEKRNDQIGSVCKVTSESEEEN 820

Query: 903 VDEAES 908
           VD  +S
Sbjct: 821 VDNEDS 826


>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
 gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
          Length = 837

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/889 (42%), Positives = 548/889 (61%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  ++ +  V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL  M ++G+  +K
Sbjct: 2   DLNKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++ D+ KDTVDF PNYD    EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNL E +D   A++DNP+I +  LM+  I+GPDFPTG +ILGR GI+ A+ TGRGSI
Sbjct: 182 IPPHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R   H+E     + +IVVTEIPYQVNKA ++ KIA+LVREK+I  I  L DES+R+G 
Sbjct: 242 MVRSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL++ A  DVILNQLYR T LQ+ F VNM+AL    P++  +   L+ +V  + +V
Sbjct: 302 RIVIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            VRRTK+ L KA DRAH+L GL IA+ ++DE++ +IR S N   AR  LM++        
Sbjct: 362 TVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AILE+RL RLTGL RD I NE   L   I +  
Sbjct: 414 ------------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMNTIADLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++  R+LGII+ EL  VK+     RRT I E   DM+DED I  ED+V+T++  GY+
Sbjct: 456 DILANHDRVLGIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P 
Sbjct: 516 KRMPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPN 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+L++ E++  ++P   D  S    +++F TK+G V+R  +S+F  I
Sbjct: 576 SGRTAKGLPVVNLLNLDKEEKVRALVPVRPDSESS---FLLFVTKNGLVKRTPMSEFDSI 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GKIA+ L   DE++ V+  T +++I++    G+ VRF    IR    R + GV+G +
Sbjct: 633 RQNGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAMG-RTASGVKGFN 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +  G  V+  A                                                 
Sbjct: 692 V-DGSIVVGAA------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +   +L VSE G+GKRT+  ++R++ R  KG++  +V+  N+ G LV+V  VN
Sbjct: 702 ----TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++  ++V++ G +IR+ V++I I SR T+GV + + A +E V  V  +
Sbjct: 756 GDEDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADEESVAKVAIV 804


>gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
          Length = 869

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/909 (40%), Positives = 561/909 (61%), Gaps = 91/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   ++++  LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE T G+ E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIE-TEGNHEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P +  L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRQLNLKDLIKAFVDHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P  A   LM+R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q+RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSEIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK EL  +KD+    R+T IV    ++  ED    ++M++T+SH+GY+KR
Sbjct: 456 LENDDLCMKVIKDELKEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++L F++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ++G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNSKGRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++L+  + G+ +RF  +A+RV   R + GVRG+
Sbjct: 636 PRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVMG-RTASGVRGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L     D+V+ M  +   + +                                      
Sbjct: 695 TLDDDPNDEVVGMVCIKDKEKE-------------------------------------- 716

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE+G+GKR++  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 717 -------------TVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESE 901
            V + + I++++  G  IR+ V+++ +  RAT+GV + +  K ++ + SV ++    E E
Sbjct: 762 NVTEENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEE 821

Query: 902 IVDEAESTE 910
           I +E    E
Sbjct: 822 IAEEKAQRE 830



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 117/277 (42%), Gaps = 16/277 (5%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +  +  +   +    ++  +  G +K+  L  Y   R+   G + + +R++D + ++ + 
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQ--NGVNAITLREDDGLIEVCMT 658

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           + +  VL  +  G   +     + +    A G      L  +  + +  ++   + E   
Sbjct: 659 NGNNEVLIANRNGRAIRFHENAVRVMGRTASGVR-GMTLDDDPNDEVVGMVCIKDKEKE- 716

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTT 700
               V+  ++ G  +R+ + D+   NR GK        +   ++++++  T+ENDI++  
Sbjct: 717 ---TVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIIN 773

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHAD----ADYDERICYM 755
           K G  +R  +S + V   R + GVR I+L K  D++ S+  VL       A+   +   +
Sbjct: 774 KSGITIRMKVSDLNVIG-RATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEEKAQREAL 832

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +  +           E  S   +S+   + +EE  +E
Sbjct: 833 EDGANHEHPTENTDFEDVSNDIESNENADDTEETTEE 869


>gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 866

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/902 (37%), Positives = 505/902 (55%), Gaps = 91/902 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRRI++ M   G    + YVK
Sbjct: 15  DRVSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYAMYDNGYRPERSYVK 74

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   + MG +HPHG++AIYD L RMAQ WS+R  L++GQGNFGS   D PAA RYTEC
Sbjct: 75  SARPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTEC 134

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG GGIAVGMATNIP H
Sbjct: 135 RLTPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGSGGIAVGMATNIPPH 194

Query: 194 NLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL E+       +D+ D      L+A+ME ++GPDFPT  +I+G  GIK+AY TGRGSI 
Sbjct: 195 NLTELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDKGIKDAYTTGRGSIK 254

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RGV+ IE     R  IV+TE+PYQVN   ++  IAE VR+ +I  I+ + DE SDR G 
Sbjct: 255 MRGVTSIE-EERGRTIIVITELPYQVNPDNLVSSIAEQVRDGKIAGISKIDDESSDRVGM 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +V  + +V
Sbjct: 314 RIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQLLRLYVDHQIDV 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR S  PE AR  LM          
Sbjct: 374 IVRRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEIARTGLMD--------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + E+Q  AIL +RL +L  L R  I +EL  L + I +  
Sbjct: 425 -----------------LLDIDELQADAILRMRLRQLAALERQKIIDELKELELTIADLK 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I++ EL  + +     RRT+I+    D+ +ED I RE++V T++  GY 
Sbjct: 468 DILARPERQRQIVRDELEEIVNNYGDDRRTQIIAATGDVTEEDLIARENVVATITSTGYA 527

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  + +YR Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 528 KRTKVDLYRNQKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTNFGRVYRLKAYELPE 587

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ + N+L    GE I  ++     E   +  Y+V ATK G V+++KL+D+   
Sbjct: 588 ASRTARGQHVANLLEFQPGEHIAQVIQLQTYE---DAPYLVLATKQGRVKKSKLTDYDSA 644

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
              G IA+ L+  D ++  + C+  +D+LL ++ GQ +RF      +   GR + GV+G+
Sbjct: 645 RSGGLIAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDTLRPMGRATAGVKGM 704

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D ++++ +V                                              
Sbjct: 705 RFRGEDALLALTVVRE-------------------------------------------- 720

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    + +++  +  G+ KRT   ++    R G G+     +K  + G L+    V
Sbjct: 721 ---------DSYLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKYNK--KRGKLIGALVV 769

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + +D+I  ++  G+++R  V +IR +SR T GV +    K   +++++R  E E  + A 
Sbjct: 770 DQDDEIFCITTDGSVVRSNVKDIRPSSRQTMGVRLVHLDKGSELLAIDRNVEDEGEEHAA 829

Query: 908 ST 909
            T
Sbjct: 830 KT 831


>gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A
 gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A
           [imported] - Buchnera sp. (strain APS)
 gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/890 (43%), Positives = 576/890 (64%), Gaps = 71/890 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK 
Sbjct: 3   DPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I I
Sbjct: 183 PPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYI 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IEK   ++++ IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R
Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E++
Sbjct: 303 IVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  
Sbjct: 363 IRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINY 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L    +            Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +
Sbjct: 423 LAKKHE-----------YYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKE 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK
Sbjct: 472 ILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +  
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R    R + GV+GI +
Sbjct: 649 FAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMG-RTASGVKGIKI 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+S+ +                                                 
Sbjct: 708 KKNDKVVSLIV------------------------------------------------- 718

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V +
Sbjct: 719 ----PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIE 772

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +
Sbjct: 773 KDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVD 822



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  LS ++  R    G   + +   D +  + 
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFA--GIIAINLHANDELIGVA 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   + +++ F+  G V +     +      A G   +  + + + +++ +++       
Sbjct: 668 LTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG---VKGIKIKKNDKVVSLIV------ 718

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILL 698
             N   ++ ATK+G  +R K+SDF   +R+  G I++K+     +I+      +++ I++
Sbjct: 719 PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMM 778

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  +S + V   RN+ GV  I  +K ++V+++  ++  
Sbjct: 779 ITDAGTLVRIRVSEVGVL-KRNTQGVILIRTSKNEKVVALQKIVDP 823


>gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383]
 gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383]
          Length = 867

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/855 (41%), Positives = 523/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A+ ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI++ +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIALLVAGSEEQTVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGMIAIQTSERNGKV---VAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/844 (42%), Positives = 526/844 (62%), Gaps = 34/844 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+VTE+PYQVNKA ++E+IAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY++T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMAR--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLVRLIAELRG 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G ++  +DED I +E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P   +    +  Y+VFATK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI--ESEFSDERYLVFATKQGIAKRSPLSAFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R    R++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISVRLTDGKKHLIIGTKNGMLIRFPETDVRAMG-RSATGVKAIT 693

Query: 729 LAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+  H D     +  + K   A    +     +     N +   G +  
Sbjct: 694 LDDGDEVVGMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  +  + ++ ++  G   R +  D   + R  +G++   +S  +    +  V  V
Sbjct: 754 VTTV---VGNEDVMVITTGGVLIRIAVSDISRTGRIAQGVKLIRLSGEDGHECVATVAKV 810

Query: 848 NDND 851
            + +
Sbjct: 811 PEEE 814


>gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
          Length = 841

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 21  QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 81  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 653 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 712 EGDTVVGASLITDQD--------------------------------------------- 726

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 727 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/854 (42%), Positives = 521/854 (61%), Gaps = 29/854 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP   +D LMEII  PDFPTG VI G +G++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIYGMSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                  + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 EMLSRADGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L +GE+IT ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKE---FSEDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISG 767
            + +R    RN+ GVRG+ L     VI++ +               Y K          G
Sbjct: 719 ENDVRPMG-RNARGVRGMMLEDTQNVIALLVAGDETQSVLTATENGYGKRTPITEYTRHG 777

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              +       SS  G +       L +    I+ ++  G   RT   + R   R+ +G+
Sbjct: 778 RGTKGMIAIQTSSRNGKV---VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGV 834

Query: 828 RATDVSKINEIGAL 841
              +V   + +  +
Sbjct: 835 TLINVDDGSSLSGV 848



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 14/260 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+ PLS +   R+   G   V + D D++    
Sbjct: 640 EKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKA--GIIAVDLDDGDYLIGAD 697

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  + L   + +  ++   ++  
Sbjct: 698 LTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG---VRGMMLEDTQNVIALLVAGDETQ 754

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
           S     V+ AT++G  +R  ++++ +  R  K  + + +     +++        ++I+L
Sbjct: 755 S-----VLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGKVVGAVLVMPSDEIML 809

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  ++ IR    R + GV  I++  G  +  +  V+ +DAD D         
Sbjct: 810 ITTGGVLVRTRVAEIREMG-RATQGVTLINVDDGSSLSGVRRVVESDADDDSEDLDDGQE 868

Query: 759 SAQRRLISGDTEEITSLKND 778
             Q           ++   +
Sbjct: 869 EGQEEGNGDAGATDSTEPTE 888


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/865 (43%), Positives = 533/865 (61%), Gaps = 34/865 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DSFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+TVDF PNYDGS +EP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EVV  C+  ID P+  +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 MPPHNLKEVVAACLYAIDAPECTVDDLIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKNTQLQDTFGINMVALVDGQPRLLNLRDLIFYFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KARDR HVL GLA+A+AN+DE + II+ +P P  A+ +L+ +SW++S ++
Sbjct: 362 ITRRTVFELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                +   +  DG   LSEVQ + IL +RL RLTGL +D I
Sbjct: 422 EMLSRTELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            NE   +  +I + LDILS   R+  IIK EL S+ +E    RR+ I     ++  ED I
Sbjct: 482 LNEYKEVIDQIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  PL+ YRAQ+RGG+G+     +++D++  LF+ +TH ++L+FS
Sbjct: 542 TPQDMVVTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY  KV+ +P GS  +RG+ +IN+  L +GE+IT ++P    E    + YV  AT 
Sbjct: 602 NAGRVYWLKVYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFED--EDKYVFMATS 659

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+++KLSDF +  + G IA+ LD  D ++        ND++L +  G+ VRF  + +
Sbjct: 660 LGTVKKSKLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDV 719

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLIS 766
           R    RN+ GVRG++L +G +VI+M +       VL A  +   +   +   +   R   
Sbjct: 720 RAMG-RNARGVRGMNLEEGQRVIAMLVAESEQQSVLTATENGFGKRTPVSEYTRHGRGTK 778

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G     TS +N   V           L      I+ ++  G   RT   + R   R+ +G
Sbjct: 779 GMIAIQTSERNGKVV--------SAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQG 830

Query: 827 IRATDVSKINEIGALVAVFPVNDND 851
           +    V +   +  L  +   +  D
Sbjct: 831 VTLISVDEGTWLSGLQRIVESDAED 855


>gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 841

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 549/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 21  QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 81  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 653 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 712 EGDTVVGASLITDQD--------------------------------------------- 726

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 727 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836


>gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
          Length = 809

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/888 (40%), Positives = 549/888 (61%), Gaps = 84/888 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S+ I +E++ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M  +G  +N+ Y K A
Sbjct: 2   LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+AA+YDAL RMAQD+++R  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 62  RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +   L D+ K TV+FR NYD +  EP VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV D  +A++D+P + LD L+  I+GPDFPT A++ GR G++ AYATGRGSI +R   H
Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMYGRQGMRQAYATGRGSIKLRSRLH 241

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E++   RE IV+TEIP+ +NKA+++EKIA+LV E ++  I+DLRDESDR G R+VI+LK
Sbjct: 242 VEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDLK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +D+++N LY+YT+L++ + +N++A+   +P+  +L  IL+ F+  R+EV++RR++Y
Sbjct: 302 RNTLSDIVINTLYKYTALETSYGINLLAVVNNRPQLLSLKQILELFLEHRKEVILRRSRY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ N+DEVVR+IR S  P  A+  LMQR               
Sbjct: 362 DLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ++AIL++RL RLT L RD +  E  ++   I+    I+    
Sbjct: 407 -----------FELSEVQSQAILDMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSE 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G+++ EL  ++    +PRRT I+E    +++ ED I  E++V+T++  GY+KR PLS
Sbjct: 456 VLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDLIPDEEVVITLTRNGYIKRTPLS 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q+RGGKG SG  +  +DFVTDL   + H  +L F++ G +++ KV+++P G   AR
Sbjct: 516 AYQQQKRGGKGVSGANVAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTAR 575

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L++ E + T++   + ++   N   +FATK G V+R+ +  +      G I
Sbjct: 576 GTHIANLLPLDKEEYVATVLCMKDFDA---NHSFLFATKKGMVKRSAVHLYRNYRPHGLI 632

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++V    +E++I L T  G  +RF  S +R    R + GV+GI+L + D 
Sbjct: 633 AVNLRDGDELIAVREVDEESEIFLITHHGVAIRFACSEVRSMG-RGAAGVKGIALRQEDA 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S  I+     D                                               
Sbjct: 692 VVSCVIINGDGRDQ---------------------------------------------- 705

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LTVSE+G+GKRT+   +R  +R GKGI    ++  ++ G ++    V++ D++I
Sbjct: 706 -----LLTVSEQGYGKRTAIDYYRQQSRGGKGIINMRLT--SKTGGVLGAMMVDETDELI 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++    ++R+   +IRI  RAT+GV + S   +  VV  +RI   E 
Sbjct: 759 MLTSMHKMLRIGTADIRICGRATQGVKLVSLDSEATVVCFDRIVSEEA 806



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 101/285 (35%), Gaps = 61/285 (21%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ DE++      + +      K G   RF +S ++  A  +    R  +L +  
Sbjct: 376 LRIALDNIDEVV---RLIRASATPAEAKAGLMQRFELSEVQSQAILDMRLHRLTNLERDK 432

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQE 792
            +     VL         I   + +    R    +  +   S +    +E + +E   ++
Sbjct: 433 LLEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASPRRTEILESDPNEIDIED 492

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+ ++T++  G+ KRT    ++   R GKG+   +V++ +    +  +    ++  
Sbjct: 493 LIPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGANVAQKD---FVTDLMTGTNHQY 549

Query: 853 IILVSDKGTLIRVPVNEI---RIASRATK------------------------------- 878
           ++L ++KG + ++ V +I   R  +R T                                
Sbjct: 550 LLLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYVATVLCMKDFDANHSFLFA 609

Query: 879 --------------------GVVIFSTAKDERVVSVERIRESEIV 903
                               G++  +    + +++V  + E   +
Sbjct: 610 TKKGMVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREVDEESEI 654


>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
 gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
          Length = 843

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/895 (42%), Positives = 549/895 (61%), Gaps = 87/895 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++   E  +G+  V I + +Q SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+
Sbjct: 1   MNDLFENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGS+DGD  
Sbjct: 61  THRAAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  LL D+ KDTVDF PNYD S +EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H L E++D  +  ++NP+ +++ LM++++GPDFPTG VI G+ GI +AY+TGR
Sbjct: 181 MATNIPPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIFGKKGIIDAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R  +HIE+    RE IV+ E+PYQVNK+ ++E IA+LVR+K+I  I+++RDESDR
Sbjct: 241 GRIKVRAKTHIEQHKN-REAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A +D++LN L++ T +Q+ F + M+A+   +P+ FTL  +L  F+  R
Sbjct: 300 EGIRVVIELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKEPKVFTLPELLDLFINHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IAV N+DEV++IIR S +   AR  LM R     
Sbjct: 360 KTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSR----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q RAILE+RL RLTGL  + I +EL  L   I+
Sbjct: 415 ---------------------FDLSEIQARAILEMRLRRLTGLEIEKIESELAELRKTIE 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL S + +  IIK+ELL VK+     RRT IV+   D++ ED I  E MVVT++H 
Sbjct: 454 YLESILKSETMIEEIIKKELLEVKEAFSDERRTEIVDDYDDIDIEDLIPNEPMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP+  Y  QRRGGKG++ V   ++DF+   FI +TH +++F +  G +Y  KV+R
Sbjct: 514 GYIKRVPVKQYEKQRRGGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYR 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L++ E+I  I+P  +      +  +VF T++G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLDKDEKIKAIIPTQDFNE---DKSLVFFTRNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             I   G  A+ LD  DE++  +    +   + + TK G C+RFP+S +R    R + GV
Sbjct: 631 SNIRSVGVRAINLDENDELIDAKIIKPDTKWLFVVTKKGMCIRFPVSDVREIG-RVARGV 689

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             I     GD V     + + + +                                    
Sbjct: 690 TAIKFKIDGDYVCGATTIENEEDE------------------------------------ 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           IL VSEKG GKRT + ++R  +R+GKG+ A  ++   + G +V 
Sbjct: 714 ----------------ILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTP--KTGDVVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V  V ++  ++ ++  G +IRV +  IR A RAT GV I +    +RVVS+ +  
Sbjct: 756 VVFVEEDKDLMCLTSAGKMIRVDMQSIRRAGRATSGVKIVNVEGKDRVVSIAKCP 810



 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 103/260 (39%), Gaps = 24/260 (9%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + +D+ DE++ +   + ++         +        +
Sbjct: 364 IRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADD------SEARANLMSRFDL 417

Query: 714 RVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                R  + +R   L   + +++ S    L    +Y E    +K  +    +I  +  E
Sbjct: 418 SEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLE--SILKSETMIEEIIKKELLE 475

Query: 772 ITSLKNDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +    +D     +  +  +   ++L   E  ++T++ +G+ KR     +    R GKG  
Sbjct: 476 VKEAFSDERRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKQYEKQRRGGKGKT 535

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
           A    + + I      F  N +D ++ V+DKG L  + V  I   SR  KG   V + + 
Sbjct: 536 AVTTYEDDFIER---FFISNTHDTLMFVTDKGQLYWLKVYRIPEGSRTAKGKAVVNLINL 592

Query: 886 AKDERVVSVERIRESEIVDE 905
            KDE++ ++  I   +  ++
Sbjct: 593 DKDEKIKAI--IPTQDFNED 610


>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
 gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
          Length = 852

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/903 (41%), Positives = 541/903 (59%), Gaps = 60/903 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I    ++ EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   QPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LIEG GNFGS+D DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  + + LL D+  +TVDF   +DGS QEPVVL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+I NP+I    LM+ I GPDFPTG  ILGR+GIK+AY +GRGSI +
Sbjct: 184 PPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQILGRSGIKDAYISGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DR+ I+VTE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR 
Sbjct: 244 RGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A A V+LN LY+ T +Q+ F  NM+AL   +P+   L   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGEPQILNLKDFLGVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V++RRT Y L KA +R H+L GL +A+ANLD ++++IR + +  +A+REL+++      
Sbjct: 364 QVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ  AIL+++L RLT L  + I+ E   L  +I +
Sbjct: 418 --------------------FGLSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL  R R+  II++EL  +K    TPRRT+IVE    + D D I  E  V+ ++  G
Sbjct: 458 LTDILQRRERVDQIIQEELTQLKSTHATPRRTQIVEEEGGIVDIDLIANEQAVILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ +  Q R  +G+SG  ++++D V        H  +LFFS  G VY    +++
Sbjct: 518 YIKRMPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+++   E      + Y+V  T+ G +++  LS + 
Sbjct: 578 PSSSRTARGVPIVQMLPIPKDEKITSMVAVSE---FTEDQYLVMLTRQGYIKKTALSAYA 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L   D++  V    +E+ I++ T+ G  + F     ++   GR + GVR
Sbjct: 635 NIRANGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D++IS+ I+                              I + +++   E   
Sbjct: 695 SMKLKGTDEIISVDILP-----------------------GQVVANIGTSEDEIEDENLE 731

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           SEE   E      ++L ++  G+GKR     FR+ NR+G G++A      N    L A+ 
Sbjct: 732 SEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRFK--NAQDQLAAIH 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN  D++++V+ +G +IR  V+ I   SR   G+ +     D+ + +V  +  +   DE
Sbjct: 790 IVNQEDEMMIVTSRGIIIRQAVDAISPQSRMATGIRVQRLDDDDAIAAVALVPPAGEDDE 849

Query: 906 AES 908
           +E 
Sbjct: 850 SEE 852


>gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
 gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
          Length = 869

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 558/900 (62%), Gaps = 88/900 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +   + +E   I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM
Sbjct: 1   MAEDL---ENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGNFGS+
Sbjct: 58  LDLGLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R QK A  +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG  
Sbjct: 118 DGDFPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HN+ E ++  VA ID+ DI++  LM+ ++ PDFPTGA+I G TG++ A
Sbjct: 178 GIAVGMATNMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIYGYTGVQEA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE T+ +RE I+VTEIPYQVNKA M+E+ AEL+ EK+I  I++++
Sbjct: 238 FETGRGRIVMRAKAEIE-TNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIK 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL   +P+   L  +++ 
Sbjct: 297 DESNKDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGRPQLLNLKDLIRH 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +VVVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++
Sbjct: 357 FVDHRHDVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQ 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I++E N L
Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL S+   + IIK EL  +K++    RRT IV    DM  ED I  ED+V+
Sbjct: 451 MKTIEYLQSILDSKELRMQIIKDELNEMKEKYGDERRTTIVHSAEDMSMEDFIEDEDVVI 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR P + YR Q RGGKG  G   R+EDF+  L + S H  +LFF+  G  + 
Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFW 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P GS  ++G+A+ NI+++ + E+I   +      D+    N Y++  TK G ++
Sbjct: 571 LRVYEIPEGSRLSKGRAIQNIINIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D++L     T  ++I++  + G+ +RF    +R    
Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMG- 689

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++LA   D+V+ M  V                                    
Sbjct: 690 RTATGVRGVTLAHDQDEVVGMIAVDDP--------------------------------- 716

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKRT   D+R++NR GKG++   V++  +
Sbjct: 717 -------------------NVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GALVA+  V D D +++++  G +IR+ V+E+R+  RAT+GV + +   ++ + SV +I
Sbjct: 756 TGALVAIKNVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDAIASVAKI 815



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 100/233 (42%), Gaps = 13/233 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +  + ++  +  G +K+  L  Y   R    G + + + + D + +  + +  + ++
Sbjct: 612 QEYLENNYIIMCTKKGTIKKTSLEAYSRPR--VNGINAININEGDQLLEASLTTGSSEIV 669

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +    ++      A G   + +   +Q E +  ++   +      N+ V+ 
Sbjct: 670 MALRSGRAIRFNEEKVRPMGRTATGVRGVTLAH-DQDE-VVGMIAVDD-----PNVTVLV 722

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R  + D+   NR GK    +   ++   +++++  T  +D+++  K G  +R
Sbjct: 723 VSEKGYGKRTDIEDYRVTNRGGKGVKTISVTEKTGALVAIKNVTDADDLMIINKSGIVIR 782

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             +S +RV   R + GVR I+L   D + S+A + H D + +E        SA
Sbjct: 783 IVVSELRVMG-RATQGVRLINLKGNDAIASVAKIEHEDEETEEGEVLDAEASA 834


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/881 (41%), Positives = 525/881 (59%), Gaps = 33/881 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L DL K TVDF PNYDGS +EP+V+  R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E VD C+ ++ NP+  +D LMEII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAGIIYGLNGVREGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V EIPYQVNK  +LE++AELV EK++  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPKLCNLRDLVEVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ SP P  A++ LM +SW++S ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++      +               Y + +DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLVRAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
             E   +   I + LDILS   R+  II +EL++VK E        RR+ I   + ++  
Sbjct: 482 IGEYKEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQELGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GYVK  PL+ YRAQRRGG+G+     +D+D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWM 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G VY  KVW +P G   ARGK ++N+  L   E+IT ++P   E  +  ++ Y+
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLIS 766
               +R    RN+ GVRG++L  G  VI+M +               Y K  S       
Sbjct: 722 DEDDVRPMG-RNARGVRGMALEPGQNVIAMLVAEDESQSVLTATENGYGKRTSITEYTRH 780

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G   +       +   G +       L   E  I+ ++++G   RT   + R   R+ +G
Sbjct: 781 GRGTKGMIAIQQTERNGRV---VAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRATQG 837

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +    +   +++G L  +   +        SD G     P 
Sbjct: 838 VTLISLDDGSQLGGLQRIVENDAG------SDAGDTEETPA 872


>gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/855 (42%), Positives = 526/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+  YL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI+M +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGVIAIQTSERNGRV---VAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301]
 gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 883

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/905 (38%), Positives = 515/905 (56%), Gaps = 95/905 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +
Sbjct: 447 ----------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYI 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFAPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTPLAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+     D +++M +V   D+D D                                
Sbjct: 728 AGVQGMKFRNDDSLLAMDVV-PGDSDKD-------------------------------- 754

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+ +GF KRT+  ++R+  R+G GI+A  + +    GAL
Sbjct: 755 ------------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEG--RGAL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 795 VGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854

Query: 902 IVDEA 906
             +++
Sbjct: 855 EPEDS 859



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 13/239 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+ PL+ Y + R+GG     ++  +     D +
Sbjct: 630 ETIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +     + +  +   P
Sbjct: 690 IGAALCNAEDDIILVSKLGMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVP 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K    ++ R  ++     ++++
Sbjct: 749 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            ++   K G+ +R  +  ++   GRN+ GV      KGD ++S+A     D   D    
Sbjct: 805 QVMAIMKSGKVIRSNVDEVK-RTGRNTQGVTFAKPDKGDTILSIARNEEKDEPEDSGDA 862


>gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
 gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
          Length = 853

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/909 (39%), Positives = 540/909 (59%), Gaps = 97/909 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+ SY+ YA++VI+ RA+PD+RDGLKPV RR+L+ M+++    +K + K
Sbjct: 7   DKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EV+   V +IDN      +  ++ ++EII+GPDFPTGA ILG+ GI+ AY TGRG I
Sbjct: 187 NLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKRGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R VS IE  +  + +I+VTE+PY VNKA ++EKIAELV++K++  I DLRDESDR G 
Sbjct: 247 RVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGILKAFVA 363
           R+ IEL+R A+A+V+LNQL ++T LQ  F V M+AL        +P+   ++ +L  ++ 
Sbjct: 307 RICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYLD 366

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM R   
Sbjct: 367 HQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSR--- 423

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+VQ++AI+++RL  LTGL R+ + NE   L   
Sbjct: 424 -----------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYRELEAR 460

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LLG+IK+E+  +  +    RRT I     DM  ED I  E  +V ++
Sbjct: 461 IAELKSILADEKKLLGVIKEEISIISAKYGDDRRTSIGFDEFDMSMEDLIPDESTIVAMT 520

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  ++ Q RGG+G  G+   D+D++ DL + +TH  ++FF++ G VY+ K 
Sbjct: 521 KLGYIKRMSVDNFKNQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKT 580

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P GS  +RG A++N+L +  GE IT I+P  E +   ++ ++  AT++G V++  + 
Sbjct: 581 YMIPEGSRTSRGTAIVNLLQMLPGESITAIIPMKEYD---DDKFLFMATRNGMVKKTPMM 637

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L TK GQC+RF    +R+  GR S+G
Sbjct: 638 EYANVRKNGLQAIVLRENDELIEVKATDDTKDIFLVTKKGQCIRFHEKDVRI-TGRVSMG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ L + DQV+ M                                             
Sbjct: 697 VIGMKLNEDDQVVGM--------------------------------------------- 711

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   + + +   +L VS  G GKRT   +F    R GKG+    +++  + G +V 
Sbjct: 712 --------QKESQGPKLLIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITE--KTGDIVG 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
              V D+  ++L++ +G +IR+ VN+I +  R T GV + +  +D    V S+ ++R+  
Sbjct: 762 AKLVEDDHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQDSDITVASIAKVRDDG 821

Query: 902 IVDEAESTE 910
              + E  E
Sbjct: 822 SKSDGEGLE 830


>gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
 gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
          Length = 822

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/900 (40%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL I++ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RIAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  +RF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++   D                                             
Sbjct: 693 DGDTVVGASVITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G+L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
 gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
          Length = 867

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/855 (42%), Positives = 524/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI+M +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGMIAIQTSERNGKV---VAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/860 (43%), Positives = 533/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L  G QVI M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIPMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
 gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 822

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLVITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
 gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
          Length = 869

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/908 (43%), Positives = 542/908 (59%), Gaps = 72/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ++ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   HDVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+SLR  LI+GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF PNYDGS Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A I+N DI +D LMEII GPDFPTGA I GR GI  AY TGRG I +R  
Sbjct: 186 NLKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATINGRAGIVQAYRTGRGRIYVRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +H+E     ++E I++TEIPYQ+NKA ++E+IAELV+EK+I  I++LRDES +   RVVI
Sbjct: 246 AHVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKD-IRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   DVILN LY  T ++ +F +N+VAL   +P+   L  +L+ FV  R EVV RR
Sbjct: 305 ELKRGEIGDVILNNLYAQTQMEGVFGINVVALVDGQPKILNLKQLLECFVRHRREVVTRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P  AR  L+ R W ++ +   ++
Sbjct: 365 TIYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFLE 424

Query: 433 LIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +      G          YLS  Q +AILELRL RLTG+  D + +E       I
Sbjct: 425 RAGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVARI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+IL S +RL+ +I++EL  ++      RRT I     D+  ED I  ED VVT+SH
Sbjct: 485 AEFLEILGSSTRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVVTISH 544

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K   LS Y+AQRRGG G++   ++DEDFV  L I STH ++L F++ G VY  KV+
Sbjct: 545 GGYAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNAGKVYWLKVF 604

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+   Q+RG+             I  ++P  E E   +                    
Sbjct: 605 QIPLAGRQSRGRP------------IINLLPLDESERITS-------------------- 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                              IL V    +++ I + T  G   + P++    FA   + G+
Sbjct: 633 -------------------ILPVREYDEDHFIFMATANGTVKKTPLTQ---FARPRTSGL 670

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R I L + + ++  A V   ++D        K +      +         ++     EG 
Sbjct: 671 RAIDLEEDNHLVGTA-VTDGNSDVMLFSSEGKAVRFNENDVRSMGRTSRGVRGIRLAEGY 729

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             E     L  ++  +LTVSE G+GKRT   ++    R+GKG+ A   S+ N  G +V  
Sbjct: 730 --EVISMVLPTEDGKVLTVSENGYGKRTKVDEYATKGRAGKGMIAMQTSERN--GKVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESE 901
             V D D+I+L+SD+GT++R  V+E+ ++ R T+GV +      E ++ VERI    + E
Sbjct: 786 VQVFDGDEIMLISDQGTMVRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVERIESIADDE 845

Query: 902 IVDEAEST 909
           IVD AES 
Sbjct: 846 IVDTAESA 853


>gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
          Length = 883

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/904 (38%), Positives = 513/904 (56%), Gaps = 95/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIY  L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +
Sbjct: 447 ----------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYI 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVA---KYLVLATRSGKVKKTPLAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+     D +++M +V   D+D D                                
Sbjct: 728 AGVQGMKFRNDDSLLAMDVV-PGDSDKD-------------------------------- 754

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+ +GF KRT+  ++R+  R+G GI+A  + +    GAL
Sbjct: 755 ------------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEG--RGAL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 795 VGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854

Query: 902 IVDE 905
             ++
Sbjct: 855 EPED 858



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 13/239 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+ PL+ Y + R+GG     ++  +     D +
Sbjct: 630 ESIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +     + +  +   P
Sbjct: 690 IGAALCNAEDDIILVSKLGMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVP 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K    ++ R  ++     ++++
Sbjct: 749 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            ++   K G+ +R  +  ++   GRN+ GV      KGD ++S+A     D   D    
Sbjct: 805 QVMAIMKSGKVIRSNVDEVK-RTGRNTQGVTFAKPDKGDTILSIARNEEKDEPEDGGDA 862


>gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
          Length = 864

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/901 (41%), Positives = 554/901 (61%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +++   +  + I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K
Sbjct: 2   DQKAARVKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YD + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 62  PHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  ++ D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGM+T+
Sbjct: 122 YTEARMSPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+ P+I+   LM  I+GPDFPTG  I+GR  I  AY  GRG + 
Sbjct: 182 IPPHNLGEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIMGRGSIYKAYKNGRGKLT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + +E  S  R+QI+V E+PYQVNKA +++KIA+LV+ +++  I+D+RDESDR G R
Sbjct: 242 VRAKTRVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+  V+LNQLY+++ LQ  FSV M+AL   +P+  +L  IL+ ++  ++EVV
Sbjct: 302 IVIELKREATPKVVLNQLYKHSRLQVTFSVIMIALVDKEPKVLSLKQILEHYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L+KA DRAH+L G  IA+AN+DE+V +I+ +   +TAR  LM+          
Sbjct: 362 RRRTQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLMEN--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q  AIL +RL  LTGL RD I +E   L  +I     
Sbjct: 413 -----------------YKLSETQANAILRMRLQSLTGLERDKIESEYTDLQEQITYYRS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LL IIK+E+L++K + +  RRT I+    D+E ED I  E +VVT+++ GY+K
Sbjct: 456 ILASEEKLLEIIKEEILAIKAKYNDERRTSIMNRATDLELEDLIEEEQIVVTMTNQGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL +YR+QRRGGKG  G+  ++EDFV ++F  +TH   LFF++ G VY+ K +++P  
Sbjct: 516 RMPLDLYRSQRRGGKGVIGISTKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPET 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QARG A+IN+L L +GE+I  ++P  E      + Y++ ATK+G +++  L ++   N
Sbjct: 576 GRQARGTAIINLLELEEGEKINAVIPIKE---FPADAYLIMATKNGLIKKTALEEY-NTN 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE++ V     + +I L T+  + + F  + +R    RNS GV+GI+L
Sbjct: 632 YTGLIAINLRENDELIGVRVIEAKENIFLVTRNAKAIHFSEADVRSVG-RNSYGVKGINL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI +                                                   
Sbjct: 691 ETEDEVIDLG-------------------------------------------------- 700

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +      +L ++E G+GKRT   ++R+ NR GKGI   ++++ N  G L A   V+D
Sbjct: 701 ---IDSAGDELLVITENGYGKRTLISEYRVQNRGGKGILTANLTEKN--GQLAAARIVDD 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + +++ ++  G +IRV  +EI    R T GV I +  ++++VVS+ RI +  + D+ ++ 
Sbjct: 756 SLEMMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEEDQVVSLARINDDILEDQEDNK 815

Query: 910 E 910
           E
Sbjct: 816 E 816



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 101/270 (37%), Gaps = 16/270 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  ++  +  G +K+  L  Y        G   + +R+ D +  + 
Sbjct: 594 EKINAVIPIKEFPADAYLIMATKNGLIKKTALEEYNTN---YTGLIAINLRENDELIGVR 650

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           ++    ++   +            +      + G   IN+      E    ++    D +
Sbjct: 651 VIEAKENIFLVTRNAKAIHFSEADVRSVGRNSYGVKGINL------ETEDEVIDLGIDSA 704

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
                 ++  T++G  +R  +S++   NR GK    A   +   ++ +        +++ 
Sbjct: 705 GDE---LLVITENGYGKRTLISEYRVQNRGGKGILTANLTEKNGQLAAARIVDDSLEMMA 761

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T+ G  +R   S I    GRN++GV+ I++ + DQV+S+A +     +  E     K  
Sbjct: 762 ITQAGIIIRVAASEIST-TGRNTMGVKIINVGEEDQVVSLARINDDILEDQEDNKEEKEE 820

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            +          +I +  +    E  +SE+
Sbjct: 821 LSPEAKAEARFNKIVAKIDKEDREKELSEQ 850


>gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM]
          Length = 841

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 545/905 (60%), Gaps = 86/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  NKK
Sbjct: 3   KEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 63  YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K +  +L DL K+TVDF+ N+D S QEP VL  + PN+LVNG  GIAVGMATN+
Sbjct: 123 TEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E VD   A IDN +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+
Sbjct: 183 APHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+  G+R  I+VTEIPY VNKA M+ + +ELV+E +I  I ++RDESDR+G RV
Sbjct: 243 RAKVAFEEI-GNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +P++  L  I+  FV  R E+V+
Sbjct: 302 VYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           RRT+Y L KAR+RAH+L G          LD+ + IIR S  P+ A+  L+         
Sbjct: 362 RRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAE------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS++Q +AIL+LRLARLTG+  D IR+E  ++   I + 
Sbjct: 415 -------------------FELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++ +R   IIK ELL VK++    RRT I     +M  ED I  E++V+T+SH GY
Sbjct: 456 EDILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  Y  +V+ +P
Sbjct: 516 IKRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDF 665
            GS  A+G+A+ N++++   ++I   +   +  D      +YVV  TK+G +++  L  +
Sbjct: 576 EGSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAY 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G  A+++   D++L        ++I++ TK G+C+RFP    R    R S+GVR
Sbjct: 636 SRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARAVG-RTSIGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL   D+VI M +V                                            
Sbjct: 695 GISLEDNDEVIGMIVVND------------------------------------------ 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                    ++ + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+ 
Sbjct: 713 ---------MENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQ 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D + +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++   + V++
Sbjct: 762 SVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVED 821

Query: 906 AESTE 910
            E  E
Sbjct: 822 EEIEE 826



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 105/240 (43%), Gaps = 13/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V++  VV ++  G +K+  L  Y   R    G   + +R++D +    + + ++ ++  
Sbjct: 612 YVKQMYVVMITKNGTIKKTSLEAYSRPR--TNGIHAIEIREDDQLLGARLTNGNSEIMIA 669

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    +       + G   +  +SL   + +  ++   + E    N  V+  +
Sbjct: 670 TKNGKCIRFPEEKARAVGRTSIG---VRGISLEDNDEVIGMIVVNDME----NETVLVVS 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + D+   NR GK  + L+  ++   ++++++    ND+++  K G  +R  
Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMS 782

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RV   RN+ GVR I+L   D++ ++A V       DE I      +      + + 
Sbjct: 783 VDNMRVMG-RNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSEE 841


>gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA]
 gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA]
 gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200]
 gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
          Length = 822

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 851

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/890 (38%), Positives = 513/890 (57%), Gaps = 91/890 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK
Sbjct: 18  DRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RYTEC
Sbjct: 78  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 137

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 138 RLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPH 197

Query: 194 NLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL E+ D    +++NPD D     +A ME I+GPDFPT  +I+G  GIK+AY TGRGSI 
Sbjct: 198 NLRELADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIVGTQGIKDAYTTGRGSIR 257

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RGV+ IE   G R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR G 
Sbjct: 258 MRGVTSIE-EEGSRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGM 316

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA + EV
Sbjct: 317 RIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEV 376

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + ARR L+          
Sbjct: 377 IVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLID--------- 427

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +EL  +   I +  
Sbjct: 428 -----------------LLTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIADLK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+S  R   I++ EL  + D+    RR++I+    D+ +ED I RE++VVT++  GY 
Sbjct: 471 DILASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITSTGYA 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 531 KRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G V++++LSD+   
Sbjct: 591 ASRTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATVQGRVKKSRLSDYESA 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
              G IA+ L+  D+++    C+ E+D+LL ++ GQ +RF     ++   GR++ GV+G+
Sbjct: 648 RSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGM 707

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D +++M +V                                              
Sbjct: 708 RFRGDDHLLAMTVVRDG------------------------------------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      ++L  +  G+GKRTS  ++ +  R G G+     +   + G L+    V
Sbjct: 725 ----------SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP--KRGKLIGALAV 772

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D+DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R 
Sbjct: 773 DDDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDRN 822


>gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4]
 gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae
           TIGR4]
 gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A
 gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4]
 gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375]
          Length = 822

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 549/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEELDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D  S ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESD--SSDDAYLFFTTRHGIVKRTSIKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39]
 gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
 gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A
 gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39]
 gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
          Length = 822

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141]
          Length = 822

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLVITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 824

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/904 (40%), Positives = 552/904 (61%), Gaps = 93/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
                + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + K
Sbjct: 7   DKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQDWS+R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKIAMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV+D  V +IDN     D  +D ++ II+GPDFPTGA ILG  GIK AY TGRG I 
Sbjct: 187 NIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTGRGKIK 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE  S  + +IVV+E+PY VNKA ++EKIAELV++KRI  I DLRDES+R+G R
Sbjct: 247 VRAVTEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGMR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL++  +A++ILN+LY++T LQ  F VNM+AL   +P+   ++ +L+ ++A +E+VV
Sbjct: 307 VVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYLAHQEDVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKY LNKA++RAH+L GL IA+ N+DE+++IIR S N   A+ EL++R         
Sbjct: 367 TRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+VQ +AI+++RL  LTGL R+ + +E N L  +I+    
Sbjct: 418 -----------------FGLSDVQAQAIVDMRLRALTGLERERLESEYNELLAKIEYFEG 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +LL +IK+E+L V+D+    RRT  ++     +++    +ED+++ ++ LGY+K
Sbjct: 461 ILADEKKLLTLIKEEILVVEDKYKDDRRTGFMQDDDMEDEDLIQ-KEDIIIAMTKLGYIK 519

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    +  Q RGGKG  G+   D+DF+ D+ + +TH  + FF++ G VY  K +++P  
Sbjct: 520 RMSPDNFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEA 579

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG A++N+L L   E+I+ I+P    E+  N+ Y+   TK+G +++ +++ F  I 
Sbjct: 580 SRTARGIAIVNLLQLQPDEKISAIIP---SEAKSNDGYLFMVTKNGTIKKCQINLFDNIR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+    ++D+++ +K G C+R     IR    R + GVRG+ L
Sbjct: 637 KNGLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAVG-RGATGVRGMRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VI M +    +                                            
Sbjct: 696 NTGDEVIGMQLASQGE-------------------------------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    ++L VSE G+GKRT   +F++ NR GKGI     ++  + G LV    VN+
Sbjct: 712 ---------YLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNE--KTGKLVGAKLVNE 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVD-EA 906
           + +I+L++ +G +IR+ V+ I I  R   GV + +  +  D ++ S+ +IRE +  + + 
Sbjct: 761 DREILLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASIAKIREEKNTESDE 820

Query: 907 ESTE 910
           ES E
Sbjct: 821 ESNE 824


>gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616]
 gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
          Length = 867

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/928 (40%), Positives = 550/928 (59%), Gaps = 90/928 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +                                 
Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPI--------------------------------- 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                V    L D  +IN              +L V+  + +  + + T LG   + P+ 
Sbjct: 629 -----VNMFPLQDGEKIN-------------VVLPVKEFSADKFVFMATSLGTVKKTPLE 670

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A   F+     G+  + L +GD +I  +I        D     M    A + +   + + 
Sbjct: 671 A---FSRPMKKGIIAVGLDEGDYLIGASIT-------DGAHDVMLFSDAGKAVRFDENDV 720

Query: 772 ITSLKNDSSVEGNISEERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    V G   +E  Q + L     ++Q +LT +E GFGKRT   ++    R  KG
Sbjct: 721 RPMGREARGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKG 780

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  
Sbjct: 781 MIAIQTSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLD 838

Query: 887 KDERVVSVERIRESE----IVDEAESTE 910
           +  ++  +++I E+E      DEA   E
Sbjct: 839 EGTKLSGLQQIAEAEDGDGEADEASDGE 866


>gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265]
 gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265]
          Length = 827

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/898 (41%), Positives = 540/898 (60%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  V+I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRQRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TV++  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG  A+IDNPDI+++ LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PQNLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIYGYEGVRLAYTTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE IVVTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQFYIQHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R          
Sbjct: 362 RRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E       I+E  DI
Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYAETIALIEELRDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R + II+ ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LASPERQMQIIRTELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   +++DF+  +F+ STH  +LFF+S G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ LN GE I T +     +      +++ AT  G V++  L +F +  R
Sbjct: 576 RAARGRSLANIMELNPGETIKTYINIRNFDE---PGFIMMATADGIVKKTALEEFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D+ D +L       ++ ++L    G  VRFP S +R    R ++GV+GI+L 
Sbjct: 633 NGIAAITIDTGDALLDARLTDGDHQVILAKSSGLVVRFPESQVRPMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 RGEKCISMVTTKRLD--------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  +IGALV +  VND+
Sbjct: 707 -------TALLAVTDNGFGKRSKVEDYRLTKRGARGVITLKAHE--KIGALVGLLDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I+++  G + R  V++IRI  R T GV +    + + V ++ R+ +++   + E+
Sbjct: 758 DDLIIITSHGIVNRQHVSDIRITGRNTSGVRLVRLMEGDAVSALARVPKTDEDTDTET 815


>gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 818

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/887 (41%), Positives = 547/887 (61%), Gaps = 85/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   +     N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTII--SQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      +DI++ TK G  VRF  SA+R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDGDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G                                                      E   
Sbjct: 693 EG-----------------------------------------------------DEVVG 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN +
Sbjct: 700 ASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLATVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + I++++D G +IR  V  I    RAT GV I    +D ++++   +
Sbjct: 758 EDIMVITDTGVIIRTNVASISQTGRATLGVKIMRLDQDAKIMTFALV 804


>gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
 gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
          Length = 842

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 553/906 (61%), Gaps = 89/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ ++++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIQNKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A+                                        
Sbjct: 695 DEDGQDEVVGMICIKDPEAE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIV 903
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++    E +I+
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEEDII 821

Query: 904 DEAEST 909
            E + T
Sbjct: 822 AEEDDT 827


>gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
 gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
          Length = 883

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/915 (39%), Positives = 543/915 (59%), Gaps = 56/915 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    +D   +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MAD---PTDPNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+++RL L++G GNFGSV
Sbjct: 58  YELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           DGDPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP V+ AR P +L+NG 
Sbjct: 118 DGDPPAAMRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGS 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL E++DG +A+I +PD++   LM II GPDFPTG  ILGR GI+ 
Sbjct: 178 TGIAVGMATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQILGRRGIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y TGRGS+ +RGV+ +E        DR+ I++TE+P+Q NKA+++E+IAELV +K++  
Sbjct: 238 TYTTGRGSVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDG 297

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDESDR G R+VIEL+R A   V+LN L++ T LQ+ FS  M+AL   +P   TL 
Sbjct: 298 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLR 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR E + RRT++LL KA +R H+L+GL IA+ +LD ++ +IR + +  +AR 
Sbjct: 358 KMLEVFLEFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARS 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ +                            L+E+Q  AIL+++L RLT L  D IR 
Sbjct: 418 ELVAQ--------------------------FGLTEIQADAILQMQLRRLTALEADKIRL 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL+ R R+ GII  EL ++++   +PRRT I++    +ED D I  
Sbjct: 452 EHEDLLAKITDYKDILARRERVFGIITDELGAIRNRYLSPRRTEILDLEGGLEDIDLIAN 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  
Sbjct: 512 ERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDR 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY    +R+PI S  A+G  ++ +L + + E+IT+++      +      +V  T  G
Sbjct: 572 GVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQITSLLAVS---AFSEEAMLVMLTSGG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R +LS F  I  +G IA+ L+  D++  V      + +L+ +  G  + F ++   +
Sbjct: 629 YIKRTRLSAFSNIRSNGLIAISLEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEEL 688

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVR ++L  GDQ++SM ++    AD              R   S D+  +  
Sbjct: 689 RPLGRTARGVRAMNLRAGDQLVSMDVLSAELAD--------------RVASSSDSAGLEE 734

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + +  V   ++ E       +  ++L  S  G GKR     FR+  R+G G+RA    +
Sbjct: 735 SEPEELVADEVAAEEVAV--SEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKFRR 792

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +   LV +  +   ++++LVS++G ++R   + I   SRA  GV +      +R+V V
Sbjct: 793 DGDT--LVGLKVLGAGEEVLLVSERGVIVRTEADAIPQQSRAATGVRLQRLDAGDRLVEV 850

Query: 895 ERIRESEIVDEAEST 909
             +  +   DE ++ 
Sbjct: 851 VLVPPAASEDELDAA 865



 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 100/284 (35%), Gaps = 36/284 (12%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        E M+V ++  GY+KR  LS +   R    G   + + D D +  +
Sbjct: 603 EEQITSLLAVSAFSEEAMLVMLTSGGYIKRTRLSAFSNIRS--NGLIAISLEDGDDLRWV 660

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINI----------------- 621
            +     SVL  S  G    ++     L      ARG   +N+                 
Sbjct: 661 RLALPGDSVLIGSLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAELA 720

Query: 622 -----------LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
                      L  ++ E +       E+ +     +V+ A+  G  +R  +  F    R
Sbjct: 721 DRVASSSDSAGLEESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQKR 780

Query: 671 SGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +G     +      D ++ ++      ++LL ++ G  VR   +       R + GVR  
Sbjct: 781 AGMGLRAIKFRRDGDTLVGLKVLGAGEEVLLVSERGVIVR-TEADAIPQQSRAATGVRLQ 839

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            L  GD+++ + +V  A ++ +        + A     + D  +
Sbjct: 840 RLDAGDRLVEVVLVPPAASEDELDAAVDAELDAAVDAEAQDPAD 883


>gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
 gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A]
 gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
 gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A]
 gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
          Length = 883

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/904 (38%), Positives = 514/904 (56%), Gaps = 95/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +
Sbjct: 447 ----------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYI 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVA---KYLVLATRSGKVKKTPLAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+     D +++M +V   D+D D                                
Sbjct: 728 AGVQGMKFRNDDSLLAMDVV-PGDSDKD-------------------------------- 754

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+ +GF KRT+  ++R+  R+G GI+A  + +    GAL
Sbjct: 755 ------------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEG--RGAL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 795 VGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854

Query: 902 IVDE 905
             ++
Sbjct: 855 EPED 858



 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 13/239 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+ PL+ Y + R+GG     ++  +     D +
Sbjct: 630 ESIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +     + +  +   P
Sbjct: 690 IGAALCNAEDDIILVSKLGMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVP 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K    ++ R  ++     ++++
Sbjct: 749 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            ++   K G+ +R  +  ++   GRN+ GV      KGD ++S+A     D   D    
Sbjct: 805 QVMAIMKSGKVIRSNVDEVK-RTGRNTQGVTFAKPDKGDTILSIARNEEKDEPEDGGDA 862


>gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  +IL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLANIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
 gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
          Length = 803

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 534/885 (60%), Gaps = 84/885 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K ARI G+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  AA RYTE R+ K    +L 
Sbjct: 61  YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGMATNIP HNL EV +G   
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R  + IE+ S  + 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQG R+VIEL+     D++L
Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+LY++T LQ  F V M+AL    P    L  +L  ++  R +V+VRRT++ LNKA  RA
Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+  IR S   E AR  LMQ+                        
Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q  AIL++RL RLTGL R+ I  E   L   I++   IL+S +R   IIK E
Sbjct: 397 --FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  +K +   PRR+ I     D++ ED I  E+MV+T++  GY+KR+  +VYR Q +GG 
Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILS 623
           G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +P  GS  +RG A++N+L 
Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  GE +TT++     E    ++ +   T+ G V+R  + ++  I RSG  A+ LD  D 
Sbjct: 575 LAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV   T   DIL+ TKLG  +RF    +R+   R + GVRGI L  GD V+   ++  
Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLM-KRAAHGVRGIKLNAGDVVVGAGVLNT 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +                                                   E  + T+
Sbjct: 691 DE--------------------------------------------------SEAQVFTI 700

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV  V+++D+++L+S++G +I
Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758

Query: 864 RVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  +N+I +   +A  GV   +  + ++V S+  I  +EI +E E
Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803


>gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 858

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/896 (39%), Positives = 550/896 (61%), Gaps = 85/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM  +G   +  Y
Sbjct: 3   DQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K   +++DDL KDTVD  PN+D +  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 123 ECRLEKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DGC A IDN +I+ + LM+ I+ PDFPTG  I G  G+K+AY TGRG +V+R
Sbjct: 183 THNLSEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     +++I++TEIPY VNK  ++E IA+LV+E ++  I++  DES RQG R+V
Sbjct: 243 AKAEIESDEN-QDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   TL   +K FV  R +V +R
Sbjct: 302 IDVKRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLTLKDCIKYFVEHRHDVTIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA +RAH+L G+ IA  N+DEVV+II+ S  P  AR  L QR           
Sbjct: 362 RTKFELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RL+++TGL  +++  + + L   I     IL
Sbjct: 411 ---------------FNLDELQSQAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +    ++K EL  +K++    RRT+I+    +   ED    + +V+TVSHLGY+KR 
Sbjct: 456 TDDNLCKKVMKDELNELKEKFGDERRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +R Q RGG G  GV  R++DF   ++  + H ++LFF+  G  Y  K + +P G+ 
Sbjct: 516 PLSEFREQARGGVGSKGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +  I+     +DE   N+  VVFATK+G +++  L  + +  
Sbjct: 576 DSKGRAIQNLLNIDPDDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ +   DE++ V     +N+I++  K G+ VRF    +R    R + GVRG+ L
Sbjct: 636 ANGVIAINIAEGDEVVDVRLTNGKNEIIMANKNGRAVRFNEETVRAMG-RTATGVRGMKL 694

Query: 730 -AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               DQV+ M +V  A+A+                                         
Sbjct: 695 DGDDDQVVGMIVVNDAEAE----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +++ +  G  KR+S  D+R++NR GKG++  ++++  + G +VA+  VN
Sbjct: 714 --------NVMVVSETGYG--KRSSVEDYRVTNRGGKGVKTLNITE--KTGRVVAIKNVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
           D++ +++++  G  IR+ V+E+R+  RAT+GV + +   K++ + SV ++  SE+ 
Sbjct: 762 DDNDLMIINKSGITIRLAVSEVRVMGRATQGVRLINLSKKNDVIASVCKVMSSELE 817


>gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
 gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
          Length = 822

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL  ++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDTYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
          Length = 817

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 541/903 (59%), Gaps = 93/903 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +   S+ +EM+ SYL YA++VI+ RA+PD+RDGLKPV RR+L+ M ++G  ++K Y 
Sbjct: 3   DQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKPYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+ +GKYHPHG+  +Y+A+ RM Q +S+R  LI+GQGNFGSVDGD PAA RYTE
Sbjct: 63  KSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K+TVDFR NYDGS  EPVVL AR+PNVLVNG  GIAVGM+TNIP 
Sbjct: 123 VRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++++P   +D LM+ ++GPDFPT   I GRTGI++AY TGRGS+ +R 
Sbjct: 183 HNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFICGRTGIRDAYLTGRGSVTLRA 242

Query: 253 VSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            + I+  +G    +R+ IVVTE+PYQVNKA++LEKIAELV EK+I  IADLRDESDR+G 
Sbjct: 243 RAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDREGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A V+LN L++YT +QS   + M+A+   +P+   L+ +L  FV  R EV
Sbjct: 303 RVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGRPQVLNLVEMLNYFVEHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KA  R H+L GL  A+  L+ ++ +IR + +   AR  LM R        
Sbjct: 363 VRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS VQ +AILE++L RLT L R  +  E   L   + E  
Sbjct: 415 ------------------FALSRVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELR 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL   ++L  +I QEL  V+    TPRRT+IV+    D   ED I +E++V+T++  GY
Sbjct: 457 EILDKEAKLREVIVQELQEVRKAYGTPRRTQIVDCESTDFTIEDLIPKEEVVITITREGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR P+S YR Q+RGG GR G+  + ED V  L+I STH+ +L F++ G VYK +V  +P
Sbjct: 517 IKRTPVSAYRTQKRGGVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +   RGKA++N++ L +GERI   +P  E  S     ++VFAT+ G +++ +LS++  
Sbjct: 577 DAATSGRGKAIVNLIELPEGERIAGTIPVREFAS---GQFIVFATRRGIIKKTELSEYAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G +AM +   DE+++V+       IL++T  GQ + F  S +R   GR + G+ GI
Sbjct: 634 IRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAICFKESDVRP-TGRMAQGIIGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V  M++V   +                                          
Sbjct: 693 RLRENDYVTGMSVVGRTED----------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL++SE G  KRT   ++ + +R G+G+    V++    G ++   PV
Sbjct: 712 ------------ILSLSELGLSKRTPITEYPVHHRGGQGVATMYVTER--TGGVIKTLPV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +++D+ ++++ +G + R+ V+++R   R  +GV + + A+ +RVV    +   E+  E  
Sbjct: 758 HEDDEFMVITQQGQVARLKVSDVRQTKRLAQGVKVIALAEGDRVVDACLV---ELSAEEP 814

Query: 908 STE 910
            TE
Sbjct: 815 VTE 817


>gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15]
          Length = 873

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/855 (43%), Positives = 539/855 (63%), Gaps = 25/855 (2%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE  +  +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G R
Sbjct: 243 RARHEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DV++N L+  T L+++F +NMV L   +P+   L  +L AFV  R EVV
Sbjct: 303 VVIELRRGENPDVVVNNLFAQTQLETVFGINMVGLINGEPKTLNLKQLLDAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+   A+ +L+ + W+  D+  
Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL    RLL +I++EL ++  E    RRT I     D+   D I  ED+VVT
Sbjct: 483 DKIADLLDILGDPERLLQVIREELEAIVTEFGDERRTEITSSRRDLTIADLIDEEDLVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  +RG+ ++NIL L++GERITT +P  +      + +V+ AT  G V++  
Sbjct: 603 RVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDY---PEDQFVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++       + +++L +  G+ VRF   A+R  + R +
Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRFNEEAVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI + +G  V+S+ I        D  +      +   +  + D     S  +   +
Sbjct: 719 RGVRGIKMPQGHHVVSLII------PQDGGVILTASENGYGKRTAIDEFPTYSRGSQGVI 772

Query: 782 EGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               SE     +          ++ +S+KG   RT + +  + +R+ +G+R   +S+ +E
Sbjct: 773 AMQCSERNGNLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDE 832

Query: 838 IGALVAVFPVNDNDQ 852
              LV V  + + D 
Sbjct: 833 R--LVGVERIAETDD 845


>gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/890 (43%), Positives = 576/890 (64%), Gaps = 71/890 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK 
Sbjct: 3   DPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I I
Sbjct: 183 PPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYI 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IEK   ++++ IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R
Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E++
Sbjct: 303 IVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  
Sbjct: 363 IRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINY 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L    +            Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +
Sbjct: 423 LAKKHE-----------YYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKE 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK
Sbjct: 472 ILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +  
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R    R + GV+GI +
Sbjct: 649 FAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMG-RTASGVKGIKI 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+S+ +                                                 
Sbjct: 708 KKNDKVVSLIV------------------------------------------------- 718

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V +
Sbjct: 719 ----PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIE 772

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +
Sbjct: 773 KDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVD 822



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  LS ++  R    G   + +   D +  + 
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFA--GIIAINLHANDELIGVA 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   + +++ F+  G V +     +      A G   +  + + + +++ +++       
Sbjct: 668 LTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG---VKGIKIKKNDKVVSLIV------ 718

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILL 698
             N   ++ ATK+G  +R K+SDF   +R+  G I++K+     +I+      +++ I++
Sbjct: 719 PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMM 778

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  +S + V   RN+ GV  I  +K ++V+++  ++  
Sbjct: 779 ITDAGTLVRIRVSEVGVL-KRNTQGVILIRTSKNEKVVALQKIVDP 823


>gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6]
 gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585]
 gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B]
 gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585]
 gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570]
 gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545]
          Length = 822

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  N
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
 gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
          Length = 867

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/855 (42%), Positives = 524/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI+M +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGMIAIQTSERNGKV---VAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
 gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
          Length = 842

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/891 (40%), Positives = 547/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ALM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A+                                        
Sbjct: 695 DEDGQDEVVGMICIKDPEAE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812


>gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107]
 gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107]
          Length = 883

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/838 (45%), Positives = 533/838 (63%), Gaps = 17/838 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV GC+A++DNPDI +D LME I GPDFPTGA+I GR GI  AY TGRG +V+R  
Sbjct: 186 NLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGAIINGRAGIVEAYRTGRGRVVMRAK 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+VTEIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R+VI
Sbjct: 246 AEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+  S DV+LN L+  T LQ+ F VNMVAL+  +P+   L  +L+AF+  R EVV RR
Sbjct: 306 EVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQPKLLNLKDMLEAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P  A+  L  R W A  +   ++
Sbjct: 366 TVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             DG  YLS  Q +AIL+LRL RLTG+  D +  E +    EI
Sbjct: 426 RAGDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+IL +  RL+ +I+ EL  V  +    RRT I+   LD+  ED I  ED VVT+SH
Sbjct: 486 AEYLEILGNAIRLMEVIRAELEQVIADFGDARRTEIIASSLDLTTEDLIAVEDRVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y+AQRRGG G+S   ++DEDFV  L I STH ++L F+S+G VY  KV+
Sbjct: 546 GGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKVYSLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P    Q+RG+ ++N+L L +GERIT+I+P    +S  N+ ++  AT+ G V++  L++
Sbjct: 606 MIPEAGRQSRGRPVVNLLPLEEGERITSILPV---KSYDNDHFIFMATRKGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +GK A++LD  D ++         D++L +  G+  RF  S +R    R+S GV
Sbjct: 663 FQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAMG-RSSRGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYD-ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI +A+G  ++ M I L            Y K          G   +       +   G
Sbjct: 722 RGIRIAEGQFIVGMVIPLAGGQVLTVSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRNG 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              E          + I+ +S++G   RT   +  + +R+ +G+R   +     +  +
Sbjct: 782 ---ELVGAVQVFDGEEIMLISDQGTMVRTRVDEVSLLSRNTQGVRLIKLKDGERMQGI 836



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 101/253 (39%), Gaps = 17/253 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +   +  G VK+  L+ +++ R    G+  + + + D +    
Sbjct: 629 ERITSILPVKSYDNDHFIFMATRKGTVKKTVLTEFQSLR--ANGKRAIELDEGDTLVGTA 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-IMPFPEDE 640
           + +    V+ FSS G   + +  ++      +RG   +  + + +G+ I   ++P    +
Sbjct: 687 VTNGACDVILFSSSGKAARFRESQVRAMGRSSRG---VRGIRIAEGQFIVGMVIPLAGGQ 743

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDIL 697
                  V+  +++G  +R  + +F    R  +  + + + D   E++         +I+
Sbjct: 744 -------VLTVSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRNGELVGAVQVFDGEEIM 796

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G  VR  +  + + + RN+ GVR I L  G+++  +  +  +  +  +R      
Sbjct: 797 LISDQGTMVRTRVDEVSLLS-RNTQGVRLIKLKDGERMQGIERIEESADENAKRELANAE 855

Query: 758 MSAQRRLISGDTE 770
                     D +
Sbjct: 856 EGDVEISDESDID 868



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 72/173 (41%), Gaps = 12/173 (6%)

Query: 740 IVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSLKNDSSVEGNIS---EERCQEL 793
           ++   D    E   Y++ +    RL   I  + E++ +   D+     I+   +   ++L
Sbjct: 474 LLAEYDDKIKEIAEYLEILGNAIRLMEVIRAELEQVIADFGDARRTEIIASSLDLTTEDL 533

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ++T+S  G+ K     D++   R G G  AT V   + +  L      + +D I
Sbjct: 534 IAVEDRVVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHL---LIASTHDTI 590

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +  +  G +  + V  I  A R ++G   V +    + ER+ S+  ++  +  
Sbjct: 591 LCFTSVGKVYSLKVYMIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYDND 643


>gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2]
 gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1]
 gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 921

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/899 (42%), Positives = 546/899 (60%), Gaps = 67/899 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+    G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   
Sbjct: 423 AMVERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED V
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE--------- 640
             + + +P  S  ARG+ L+N+L L++GERIT ++             +D+         
Sbjct: 602 WLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVL 661

Query: 641 ---------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
                                +     Y+  AT  G V++  L  F +   SG IA+KL+
Sbjct: 662 EGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLE 721

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D +++        +++L +  G+ +RF  S +R+   RN+ GVRG+ L KG Q+ISM 
Sbjct: 722 EGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMG-RNARGVRGMRLGKGQQLISML 780

Query: 740 I------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           I      +L A      +   +     + R   G    +T+ +N + +     +E     
Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQE----- 835

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               + I+ +S++G   RT   +  +S R+ +G+    ++    +  L  V   +  D 
Sbjct: 836 ---GEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDD 891



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+ PL  +   R    G   + + + D +    I      V+ FS
Sbjct: 685 PTGAYIFMATAFGTVKKTPLVQFSRPRSS--GLIALKLEEGDTLIAAAITDGAKEVMLFS 742

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V +     + I    ARG   +  + L +G+++ +++  PE     +   ++ A++
Sbjct: 743 SAGKVIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML-IPE-----SGAQILTASE 793

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  LS F +  R G   IAM  +     +++     +  +I+L +  G  VR  +
Sbjct: 794 RGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRV 853

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + + +GRN+ GV  I LA  + ++ +  V       DE
Sbjct: 854 DEVSL-SGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDE 892


>gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/890 (43%), Positives = 576/890 (64%), Gaps = 71/890 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK 
Sbjct: 3   DPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I I
Sbjct: 183 PPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYI 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IEK   ++++ IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R
Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E++
Sbjct: 303 IVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  
Sbjct: 363 IRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINY 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L    +            Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +
Sbjct: 423 LAKKHE-----------YYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKE 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK
Sbjct: 472 ILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +  
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R    R + GV+GI +
Sbjct: 649 FAGIIAINLHTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMG-RTASGVKGIKI 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+S+ +                                                 
Sbjct: 708 KKNDKVVSLIV------------------------------------------------- 718

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V +
Sbjct: 719 ----PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIE 772

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +
Sbjct: 773 KDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVD 822



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  LS ++  R    G   + +   D +  + 
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFA--GIIAINLHTNDELIGVA 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   + +++ F+  G V +     +      A G   +  + + + +++ +++       
Sbjct: 668 LTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG---VKGIKIKKNDKVVSLIV------ 718

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILL 698
             N   ++ ATK+G  +R K+SDF   +R+  G I++K+     +I+      +++ I++
Sbjct: 719 PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMM 778

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  +S + V   RN+ GV  I  +K ++V+++  ++  
Sbjct: 779 ITDAGTLVRIRVSEVGVL-KRNTQGVILIRTSKNEKVVALQKIVDP 823


>gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 822

 Score =  749 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
          Length = 876

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/908 (38%), Positives = 513/908 (56%), Gaps = 93/908 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ 
Sbjct: 24  DHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRS 83

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA RY
Sbjct: 84  FNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRY 143

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATNI
Sbjct: 144 TETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNI 203

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HNL EV +G    + NP    + L    M  I+GPDFPTGA ILG  GI++AY TGRG
Sbjct: 204 PPHNLREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRG 263

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           SI +R V ++E+    R  +VVTE+PYQ N   +  KIAEL+++ ++  IADLRDE+  R
Sbjct: 264 SITMRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGR 322

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VI LKR AS  V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  +
Sbjct: 323 TGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQ 382

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM+      
Sbjct: 383 MDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME------ 436

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + E Q +AIL ++L RL  L R  I++  + L   I 
Sbjct: 437 --------------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIA 476

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSH 544
           E   I++S +R   II +EL  + +     RRT+I+ G   DM  ED I  E++VVT++ 
Sbjct: 477 EYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITR 536

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K +
Sbjct: 537 GGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGY 596

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L      A+G+ + N+L    GE I  +M   E +S  +  Y+V AT+ G V++++LSD
Sbjct: 597 ELQEAGRDAKGQHIANLLEFQGGEHIAQVM---ELKSYEDAEYLVLATRGGMVKKSRLSD 653

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
           +     +G IA+ L   DE++S  T + ++DILL ++ G  +RF      +   GR++ G
Sbjct: 654 YDTNRTAGLIAINLREGDEVVSAFTVSDKDDILLVSRNGMSLRFHADDASLRPMGRSTSG 713

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+   +GD++I                                               
Sbjct: 714 VTGMKFREGDELI----------------------------------------------- 726

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +  +  F+  V+E G+ KRTS  ++R+  R+G GI+   + +  + GALV 
Sbjct: 727 ------SANVVTEGSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVE--DRGALVG 778

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V++ D++++V   G ++R  VNE+    R T GV+     K + ++ V R ++ ++ 
Sbjct: 779 GLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLD 838

Query: 904 D-EAESTE 910
           D + E+TE
Sbjct: 839 DSDDETTE 846



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 13/265 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + +       + +V  +  G VK+  LS Y   R    G   + +R+ D V   F
Sbjct: 620 EHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTA--GLIAINLREGDEVVSAF 677

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            VS    +L  S  G   +       +  P  R  + +  +   +G+ + +     E   
Sbjct: 678 TVSDKDDILLVSRNGMSLRFHADDASL-RPMGRSTSGVTGMKFREGDELISANVVTE--- 733

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                +V   T+ G  +R  + ++    R+G   K+A  ++ R  ++      +E+++L+
Sbjct: 734 ---GSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLV 790

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++ +     R+++GV      KGD +I +A       D  +        
Sbjct: 791 VMASGKVVRSNVNEVPAKG-RDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDDETTENTE 849

Query: 759 SAQRRLISGDTEEITSLKNDSSVEG 783
           +++     G   E  +   D +  G
Sbjct: 850 ASESSEAPGTDNEGEAAAADLTATG 874


>gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
 gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
          Length = 859

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/914 (40%), Positives = 550/914 (60%), Gaps = 86/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+    + +++  I  ++I ++M+ +Y+ Y+++VI+GRA+PD+RDGLKPVHRR+LFGM
Sbjct: 1   MSENT---ENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   NK Y K ARI GEVMGK+HPHG+A+IYD + RMAQ WSLR +L++GQGNFGSV
Sbjct: 58  NELGNNSNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RLQ+ A  +L+D+ K+TVDF  N+D + +EP VL  R PN+L+NG  
Sbjct: 118 DGDMPAAMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNI  HNL EVVDG +A IDN DI ++ L++ ++ PDFPTG +I G  G+K  
Sbjct: 178 GIAVGMATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIYGYEGVKQG 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG +V+RG  ++E +   RE++V+ E+PYQ+NKAA+ +KIA+L  +K I  I++ R
Sbjct: 238 FETGRGRVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEAR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VI+LKR A A+V++NQLY+Y+ LQ+ + +N VAL   +P    L  +L  
Sbjct: 298 DESDRDGMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVKGRPRVLNLKDMLSE 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FR EVVVRRT++ L KA ++AH+L G  IA+ +LDEV+ +IR S  PE A+  LM R
Sbjct: 358 FVDFRHEVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILELRL RLTG+ RD I+ E + +
Sbjct: 418 --------------------------FELSEIQSKAILELRLQRLTGMERDKIKEEYDEV 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I    +ILS       IIK EL  VK      R+T I     +M  ED I  ED+V+
Sbjct: 452 MKLIAYLKEILSDEGLRFKIIKDELEDVKKRFGDERKTEIQYLASEMRMEDIIAEEDVVI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR     YR Q+RGG+G  G   R+ED++  LF+ STH ++LFF+  G  Y 
Sbjct: 512 TISHLGYIKRTSAYDYRQQKRGGRGALGGKTREEDYIEHLFVASTHHTMLFFTEKGRCYW 571

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+ +P G    +G+A+ N+++L   ++I  I+   +  D+   ++ Y+V  T +G ++
Sbjct: 572 LKVYEIPEGEKSGKGRAIQNLINLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L DF +  ++G  A+ ++  D++L  +     + I++  K G+ +RFP + +R   G
Sbjct: 632 KTLLEDFSRPRQNGVNAITINEGDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVR-DTG 690

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R ++GVRGI +    D+V+ M  V   D      +   K                     
Sbjct: 691 RGAIGVRGIEVDNDKDEVVGMICVNKEDETRTVLVVSEK--------------------- 729

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                        GFGKRT   ++RI+NR GKG++  ++++  +
Sbjct: 730 -----------------------------GFGKRTDIEEYRITNRGGKGVKTINITE--K 758

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G+L+A+  V + D +++    G  IR+ V +IR A RAT+GV +      + + +V R+
Sbjct: 759 TGSLIAILDVTEKDDLMITCKSGITIRMAVADIREAGRATQGVRLIRLDDSDEIAAVARL 818

Query: 898 RESEIVD-EAESTE 910
            E E    + E+ E
Sbjct: 819 DEQEEQRLDEEALE 832



 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 106/249 (42%), Gaps = 11/249 (4%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G +K+  L  +   R+   G + + + + D + +  + + ++ ++     G
Sbjct: 619 HYIVLCTANGIIKKTLLEDFSRPRQ--NGVNAITINEGDQLLEAKLTNGNSQIMMAIKSG 676

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +     +      A G   I + + ++ E +  I    EDE+      V+  ++ G 
Sbjct: 677 RAIRFPENTVRDTGRGAIGVRGIEVDN-DKDEVVGMICVNKEDET----RTVLVVSEKGF 731

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + ++   NR GK    ++  ++   ++++   T+++D+++T K G  +R  ++ I
Sbjct: 732 GKRTDIEEYRITNRGGKGVKTINITEKTGSLIAILDVTEKDDLMITCKSGITIRMAVADI 791

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R  AGR + GVR I L   D++ ++A +   +    +          +         +  
Sbjct: 792 RE-AGRATQGVRLIRLDDSDEIAAVARLDEQEEQRLDEEALEGMEGNESNQDGSSATQGD 850

Query: 774 SLKNDSSVE 782
           +  +++  E
Sbjct: 851 APVDETPAE 859


>gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +  +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
 gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A
 gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1]
 gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
          Length = 923

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/899 (42%), Positives = 546/899 (60%), Gaps = 67/899 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+    G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   
Sbjct: 423 AMVERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED V
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE--------- 640
             + + +P  S  ARG+ L+N+L L++GERIT ++             +D+         
Sbjct: 602 WLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVL 661

Query: 641 ---------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
                                +     Y+  AT  G V++  L  F +   SG IA+KL+
Sbjct: 662 EGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLE 721

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D +++        +++L +  G+ +RF  S +R+   RN+ GVRG+ L KG Q+ISM 
Sbjct: 722 EGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMG-RNARGVRGMRLGKGQQLISML 780

Query: 740 I------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           I      +L A      +   +     + R   G    +T+ +N + +     +E     
Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQE----- 835

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               + I+ +S++G   RT   +  +S R+ +G+    ++    +  L  V   +  D 
Sbjct: 836 ---GEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDD 891



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 103/251 (41%), Gaps = 16/251 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+ PL  +   R    G   + + + D +    I      V+ FS
Sbjct: 685 PTGAYIFMATAFGTVKKTPLVQFSRPRSS--GLIALKLEEGDTLIAAAITDGAKEVMLFS 742

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V +     + I    ARG   +  + L +G+++ +++  PE     +   ++ A++
Sbjct: 743 SAGKVIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML-IPE-----SGAQILTASE 793

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  LS F +  R G   IAM  +     +++     +  +I+L +  G  VR  +
Sbjct: 794 RGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRV 853

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDT 769
             + + +GRN+ GV  I LA  + ++ +  V   +  D ++     +   +       ++
Sbjct: 854 DEVSL-SGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESES 912

Query: 770 EEITSLKNDSS 780
           E     + +  
Sbjct: 913 EPAAEAEGNEE 923


>gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
 gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
          Length = 867

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/928 (40%), Positives = 550/928 (59%), Gaps = 90/928 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EVVD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 VPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +                                 
Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPI--------------------------------- 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                V    L D  +IN              +L V+  + +  + + T LG   + P+ 
Sbjct: 629 -----VNMFPLQDGEKIN-------------VVLPVKEFSADKFVFMATSLGTVKKTPLE 670

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A   F+     G+  + L +GD +I  +I        D     M    A + +   + + 
Sbjct: 671 A---FSRPMKKGIIAVGLDEGDYLIGASIT-------DGAHDVMLFSDAGKAVRFDENDV 720

Query: 772 ITSLKNDSSVEGNISEERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    V G   +E  Q + L     ++Q +LT +E GFGKRT   ++    R  KG
Sbjct: 721 RPMGREARGVRGMQLDEGQQVIALLVAGSEDQSVLTATENGFGKRTPITEYTRHGRGTKG 780

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  
Sbjct: 781 MIAIQTSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLD 838

Query: 887 KDERVVSVERIRESE----IVDEAESTE 910
           +  ++  +++I E+E      DEA   E
Sbjct: 839 EGTKLSGLQQIAEAEDGDGEADEASDGE 866


>gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
 gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
          Length = 842

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/891 (40%), Positives = 546/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C++ IDN +ID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 AKAEIE-TGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YVVF TK+G V++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   D +                                        
Sbjct: 695 DEDGQDEVVGMICIKDPDTE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812


>gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1]
 gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
 gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1]
 gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
          Length = 888

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/860 (42%), Positives = 528/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 24  DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 84  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 204 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 383

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 443

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 444 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 504 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 624 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMT 680

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 681 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 740

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L    QVI+M +       VL A  +   +   +   +   R 
Sbjct: 741 DVRPMG-REARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 799

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 800 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 851

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 852 QGVTLISLDEGTKLSGLQQI 871


>gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
 gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
          Length = 888

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/860 (42%), Positives = 528/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 24  DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 84  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 204 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 383

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 443

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 444 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 504 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 624 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMT 680

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 681 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 740

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L    QVI+M +       VL A  +   +   +   +   R 
Sbjct: 741 DVRPMG-REARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 799

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 800 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 851

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 852 QGVTLISLDEGTKLSGLQQI 871


>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
          Length = 846

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/880 (40%), Positives = 526/880 (59%), Gaps = 65/880 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA-HFLL 143
           YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RLQ      LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+  +TVDF  N+DGS QEP V+ +R P +L+NG  GIAVGMATNIP HNL E++DG +
Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT---- 259
           A+I+NP+++   LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ +RGV+ IE      
Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQILGRSGIREMYTTGRGSVTMRGVASIETIEAKG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DR+ +++TE+PYQ NKAA++E+IAELV +K++  IAD+RDESDR G R+VIEL+R A 
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + RRT+YLL K
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVKGEPVLLTLRKMLEVFLDFRVETIERRTRYLLRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R H+L+GL IA+ NLD ++ +IR + +  TAR +L+++                   
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE+Q  AIL+++L RLT L  D IR E   L  +I +  DIL+ + R+L 
Sbjct: 402 -------FGLSEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVLA 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I +EL  ++   D+PRRT I++    +ED D I  E  VV ++  GY+KR+P+S + A 
Sbjct: 455 LITEELGVLRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG +G++G   + E+ V      + H S+L FS  G VY    +R+P  S  A+G  ++
Sbjct: 515 SRGTRGKAGTRSQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+++   E      +  +V  T  G ++R +LS F  I  +G IA+ L+
Sbjct: 575 QLLPIPREEQITSLLAVSEFAE---DAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISM 738
             D +  V      + +L+ ++ G  + F +S   +   GR + GVR ++L  GDQ++SM
Sbjct: 632 EGDALTWVRLAQPGDSLLIGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSM 691

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++    AD  E                            SS      E+  +    +  
Sbjct: 692 DVLPVELADRVE----------------------------SSSAAADEEDTEEVPPSEGP 723

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           ++L  S  G GKR     FR+  R+G G+R     +  ++  LV +  +   ++++LVS+
Sbjct: 724 WVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKFRRDGDV--LVGLKVLGAGEELLLVSE 781

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           KG ++R+  + +   SRA  GV +      +R+  V  + 
Sbjct: 782 KGVIVRMQADAVPQQSRAATGVRLQRLDSGDRLSEVVLVP 821


>gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
 gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
          Length = 818

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/887 (41%), Positives = 545/887 (61%), Gaps = 85/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   +        Y+ F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTII--SQSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      NDI++ TK G  VRF  SA+R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDGDELINVIRTNGNNDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G                                                      E   
Sbjct: 693 EG-----------------------------------------------------DEVVG 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN +
Sbjct: 700 ASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLATVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + I++++D G +IR  V  I    RAT GV I    +D ++++   +
Sbjct: 758 EDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQDAKLMTFALV 804


>gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
 gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
          Length = 842

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/891 (40%), Positives = 547/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID+++LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A+                                        
Sbjct: 695 DEDGQDEVVGMICIKDPEAE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812


>gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GFLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/892 (40%), Positives = 544/892 (60%), Gaps = 86/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V+I  EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM ++G   +K Y
Sbjct: 3   DQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++Y AL RMAQ+WS+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RLQ     ++DDL K+TVD   N+D + +EP V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 123 EARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+D CVA IDN DID+D LME ++ PDFPTG  I G  G++ AY TGRG +V+R
Sbjct: 183 THNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIYGMQGVREAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE    + ++IV+TEIPY VNKA ++++IA+LV EK+I  I++  DESDR+G R+V
Sbjct: 243 ARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +++KR A+A+V+LN+L++ T LQ+ FSVN +AL   +P   +L   +  FV  R +VV+R
Sbjct: 302 VDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVKGRPRLLSLKDCISNFVNHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA +RAH+L GL IA  N+DEVV IIR + NP+ A   LM R           
Sbjct: 362 RTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L EVQ +AI+E+RL +LT L ++ +RNE + L  +I+    IL
Sbjct: 411 ---------------FELDEVQAKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S     + +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SH+GY+KR 
Sbjct: 456 SDEDLCMKVIKDELIEVKEQFGDERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H ++LFF+  G  +  KV+ +P G+ 
Sbjct: 516 PLAEFRAQARGGVGSKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + I   +      D     + YVVF TK+G +++  L ++ +  
Sbjct: 576 NSKGRAIQNMLNIDPDDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D ++ V     EN+I++  + G+ +RF  S +R    R + GVRG+++
Sbjct: 636 ANGVNAITIREDDRVIGVRLTNGENEIIIANRNGRAIRFHESKVRAMG-RTATGVRGMTI 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  V     +                                        
Sbjct: 695 DEDGSDEVVGMVCVNDPQTE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R++NR  KG++  ++++  + G LVA+  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITE--KTGKLVAIKVV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV +++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQISSVCKVQ 813



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 106/255 (41%), Gaps = 11/255 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             R   VV  +  G +K+  L  Y   R    G + + +R++D V  + + +    ++  
Sbjct: 608 FCRSHYVVFCTKNGIIKKTCLQEYSRPR--ANGVNAITIREDDRVIGVRLTNGENEIIIA 665

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    ++      A G   + I      E +  ++   + ++      ++  +
Sbjct: 666 NRNGRAIRFHESKVRAMGRTATGVRGMTIDEDGSDE-VVGMVCVNDPQTE----TIMVVS 720

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R+ + D+   NR  K    L+      ++++++  T END+++  K G  +R  
Sbjct: 721 EQGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVAIKVVTDENDLMIINKSGITIRLK 780

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +R+   R + GVR I+L K +  IS    +  + + +E       ++     + G +
Sbjct: 781 VADVRIMG-RATQGVRLINLEKRNDQISSVCKVQTEDEEEETEMLSDGVAPVMDELEGSS 839

Query: 770 EEITSLKNDSSVEGN 784
           +   S   D   E N
Sbjct: 840 DASVSESRDEETETN 854


>gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
 gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 883

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/904 (38%), Positives = 514/904 (56%), Gaps = 95/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R G 
Sbjct: 278 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + +V
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + +VQ  AIL ++L  LT + RD I  E   L  +I + +
Sbjct: 447 ----------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYI 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G+  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++   
Sbjct: 611 GARDSKGQHVANLLQFAPDESIQTVLSIPNYEVA---KYLVLATRSGKVKKTPLAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQT 727

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+     D +++M +V   D+D D                                
Sbjct: 728 AGVQGMKFRNDDSLLAMDVV-PGDSDKD-------------------------------- 754

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+ +GF KRT+  ++R+  R+G GI+A  + +    GAL
Sbjct: 755 ------------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEG--RGAL 794

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  E +
Sbjct: 795 VGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854

Query: 902 IVDE 905
             ++
Sbjct: 855 EPED 858



 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 13/239 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE----DFV 577
           E +  +           +V  +  G VK+ PL+ Y + R+GG     ++  +     D +
Sbjct: 630 ESIQTVLSIPNYEVAKYLVLATRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADEL 689

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + +    ++  S LG   K +        P  R  A +  +     + +  +   P
Sbjct: 690 IGAALCNAEDDIILVSKLGMSLKFQADD-EQLRPMGRQTAGVQGMKFRNDDSLLAMDVVP 748

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
            D    ++  +   T  G  +R  +S++    R+G   K    ++ R  ++     ++++
Sbjct: 749 GD----SDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDD 804

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            ++   K G+ +R  +  ++   GRN+ GV      KGD ++S+A     D   D    
Sbjct: 805 QVMAIMKSGKVIRSNVDEVK-RTGRNTQGVTFAKPDKGDTILSIARNEEKDEPEDGGDA 862


>gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/890 (43%), Positives = 576/890 (64%), Gaps = 71/890 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK 
Sbjct: 3   DPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I I
Sbjct: 183 PPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYI 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IEK   ++++ IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R
Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E++
Sbjct: 303 IVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  
Sbjct: 363 IRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINY 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L    +            Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +
Sbjct: 423 LAKKHE-----------YYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKE 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL +  ++  +IK ELLS+++     RRT+I E   ++  ED I +ED+VVT+SH GYVK
Sbjct: 472 ILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSNINMEDLINQEDVVVTLSHSGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +  
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R    R + GV+GI +
Sbjct: 649 FAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMG-RTASGVKGIKI 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+S+ +                                                 
Sbjct: 708 KKNDKVVSLIV------------------------------------------------- 718

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V +
Sbjct: 719 ----PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIE 772

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +
Sbjct: 773 KDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVD 822



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  LS ++  R    G   + +   D +  + 
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFA--GIIAINLHANDELIGVA 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   + +++ F+  G V +     +      A G   +  + + + +++ +++       
Sbjct: 668 LTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG---VKGIKIKKNDKVVSLIV------ 718

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILL 698
             N   ++ ATK+G  +R K+SDF   +R+  G I++K+     +I+      +++ I++
Sbjct: 719 PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMM 778

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  +S + V   RN+ GV  I  +K ++V+++  ++  
Sbjct: 779 ITDAGTLVRIRVSEVGVL-KRNTQGVILIRTSKNEKVVALQKIVDP 823


>gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/894 (41%), Positives = 546/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811


>gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda]
          Length = 878

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/854 (43%), Positives = 535/854 (62%), Gaps = 28/854 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A    +LN LY  T +Q  F +NMVAL+  +P+   L   L+AFV  R EVV RR
Sbjct: 306 EVKRDAVGRGVLNNLYTQTQMQVSFGINMVALHQGQPKLLDLKECLEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++ 
Sbjct: 366 TIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLA 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++ED +  L + +TH ++L F S G +Y  K++
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFSRGRMYWMKMY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +L   S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++
Sbjct: 606 QLAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+  +  DE++ V+     ++++L +  G+ VRF   A+R    R + GV
Sbjct: 663 FSRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAMG-RTATGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI LA  D+V+S+ +      +L    +   +   +     + R   G    I   + +
Sbjct: 722 RGIKLAGEDRVVSLIVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVIS-IKVTERN 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            SV G +  E C +       I+ +++ G   RT   +  I   + +G+     ++   +
Sbjct: 781 GSVVGAVQVEDCDQ-------IMMITDAGTLVRTRVSEVSIVGCNTQGVILIRTAEDEHV 833

Query: 839 GALVAVF-PVNDND 851
             L  V  PV+D D
Sbjct: 834 VGLQRVVEPVDDED 847



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 22/256 (8%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T I+                 V   +  G VK+  L+ +   R  G         
Sbjct: 627 ADERITAILP-------VREYAEGVNVFMATASGTVKKTALTEFSRPRAAGIIAVNPNYG 679

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           DE    DL   +    V+ FS  G V + K   +      A G   +  + L   +R+ +
Sbjct: 680 DELIGVDLTDGN--DEVMLFSVAGKVVRFKEDAVRAMGRTATG---VRGIKLAGEDRVVS 734

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVET 689
           ++             ++  T++G  +R+ ++++   +R+  G I++K+      ++    
Sbjct: 735 LIV------PHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQ 788

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + I++ T  G  VR  +S + +    N+ GV  I  A+ + V+ +  V+    D D
Sbjct: 789 VEDCDQIMMITDAGTLVRTRVSEVSIVG-CNTQGVILIRTAEDEHVVGLQRVVEPVDDED 847

Query: 750 ERICYMKHMSAQRRLI 765
                         ++
Sbjct: 848 LDSIDGSAAEGDDEIV 863


>gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031]
 gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031]
 gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104]
          Length = 822

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/894 (41%), Positives = 547/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811


>gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 883

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/911 (38%), Positives = 516/911 (56%), Gaps = 95/911 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ 
Sbjct: 35  ESGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RY
Sbjct: 95  YNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRY 154

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNI 214

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HN+ EV DG    +D+PD   + L+E    II+GPDFPTGA ILG  GI+ AY TGRG
Sbjct: 215 PPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRG 274

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
            I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE+  R
Sbjct: 275 LITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGR 333

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  +
Sbjct: 334 TGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQ 393

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  LM+      
Sbjct: 394 LDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME------ 447

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + +VQ  AIL ++L  LT + RD I  E   L   I 
Sbjct: 448 --------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRRIA 487

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + +DIL+   R   II  EL  +  +    RRTRI+    +M  ED I  E++VVTV+H 
Sbjct: 488 DYIDILAKPERQRKIIGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTHS 547

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 548 GFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYE 607

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++
Sbjct: 608 LPEGSRDSKGQHVANLLQFAPDETIQTVLSIPNYEVA---RYLVLATRSGKVKKTPLAEY 664

Query: 666 IQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
               + G IA++L +       DE++    C  ++DI+L ++LG  ++F     ++   G
Sbjct: 665 DSPRQGGLIAVRLMADENGENADELIGAALCNAQDDIILVSRLGMSLKFQADDEQLRPMG 724

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G+     D +++M +V  +D+D D                             
Sbjct: 725 RQTAGVQGMKFRADDSLLAMDVV-PSDSDKD----------------------------- 754

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +  V+ +GF KRT+  ++R+  R+G G++A  + +    
Sbjct: 755 ---------------------LFVVTNEGFAKRTAIGEYRLQGRNGLGVKAVQLVEG--R 791

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           GALV    V+++DQ++ +   G +IR  V+E++   R T+GV      K + ++S+ R  
Sbjct: 792 GALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDMILSIARNE 851

Query: 899 ESEIVDEAEST 909
           E +  +E   T
Sbjct: 852 EKDEPEEDGGT 862


>gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
 gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
          Length = 803

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/885 (42%), Positives = 533/885 (60%), Gaps = 84/885 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K ARI G+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA  R+AQD++ R LL++G GNFGS+DGD  AA RYTE R+ K    +L 
Sbjct: 61  YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGMATNIP HNL EV +G   
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R  + IE+ S  + 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQG R+VIEL+     D++L
Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+LY++T LQ  F V M+AL    P    L  +L  ++  R +V+VRRT++ LNKA  RA
Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+  IR S   E AR  LMQ+                        
Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q  AIL++RL RLTGL R+ I  E   L   I++   IL++ +R   IIK E
Sbjct: 397 --FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILANEARQRQIIKDE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  +K +   PRR+ I     D++ ED I  E+MV+T++  GY+KR+  +VYR Q +GG 
Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILS 623
           G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +P  GS  +RG A++N+L 
Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  GE +TT++     E    ++ +   T+ G V+R  + ++  I RSG  A+ LD  D 
Sbjct: 575 LAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV   T   DIL+ TKLG  +RF    +R+   R + GVRGI L  GD V+   ++  
Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLM-KRAAHGVRGIKLNAGDVVVGAGVLNT 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +                                                   E  + T+
Sbjct: 691 DE--------------------------------------------------SEAQVFTI 700

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV  V+++D+++L+S++G +I
Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758

Query: 864 RVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  +N+I +   +A  GV   +  + ++V S+  I  +EI +E E
Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803


>gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366]
 gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366]
          Length = 869

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 555/900 (61%), Gaps = 88/900 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +   + +E   I  + I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEDL---ENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGN+GS+
Sbjct: 58  LDLGLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R QK A  +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG  
Sbjct: 118 DGDSPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HN+ E ++  +A IDN +I +  LM+ I+ PDFPTGA+I G TG++ A
Sbjct: 178 GIAVGMATNMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE    DRE I+VTEIPYQVNKA M+E+ AELV EK++  I++++
Sbjct: 238 FETGRGRIVMRAKAEIEAAK-DREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIK 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL   +P+   L  ++  
Sbjct: 297 DESNKDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHY 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVVVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++
Sbjct: 357 FVEHRHEVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I++E N L
Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL   S+ + IIK EL  +K++    RRT IV    DM  ED I  E++V+
Sbjct: 451 MKTIEYLQSILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVI 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR P + YR Q RGGKG  G   R+EDF+  L I S H  +LFF+  G  + 
Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFW 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ NI+++ + E+I   +      D+    N Y++  TK G ++
Sbjct: 571 LRVYEIPEGTRLSKGRAIQNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D++L     T  ++I++  + G+ +RF    +R    
Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMG- 689

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++LA + D+V+ M  V    A                               
Sbjct: 690 RTATGVRGVTLAHEKDEVVGMIAVDDPGAT------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 IL VSEKG+GKRT   D+R++NR GKG++  +V+  ++
Sbjct: 720 ----------------------ILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA+  V D D +++++  G +IR+ V+E+R+  RAT+GV + +   ++ + SV RI
Sbjct: 756 TGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 101/228 (44%), Gaps = 13/228 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +  + ++  +  G +K+  L  Y   R    G + + + + D + +  + +  + ++
Sbjct: 612 QEYLENNYIIMCTKKGTIKKTSLEAYSRPR--VNGINAININEGDQLLEASLTTGSSEIV 669

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +    ++      A G  +  +   ++ + +  ++   +         ++ 
Sbjct: 670 MALRSGRAIRFNEEKVRPMGRTATG--VRGVTLAHEKDEVVGMIAVDD-----PGATILV 722

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R  + D+   NR GK    ++  D+   ++++++ T  +D+++  K G  +R
Sbjct: 723 VSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVAIKSVTDADDLMIINKSGIVIR 782

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
             +S +RV   R + GVR I+L   D++ S+A + H D + +E   ++
Sbjct: 783 IVVSELRVMG-RATQGVRLINLKGNDEIASVARIEHEDEEVEEAESHV 829


>gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE  D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+   G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRCVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 842

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/881 (41%), Positives = 529/881 (60%), Gaps = 45/881 (5%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL-DDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRLQ      L  D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG VA+I NP+I 
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT----SGDREQIVV 268
              LM+ + GPDFPTGA ILG + IK AY TGRGSI +RG++ IE        +RE I++
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAIII 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+VIELKR +   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+A+LD ++ +IR +P+  TA+ EL+                           +  
Sbjct: 361 GLLIALAHLDSIINLIRSAPDAPTAKGELIN--------------------------SYG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSEVQ  AIL+++L RLT L  D IR E   L ++I +  DIL  R R+L II+ E   +
Sbjct: 395 LSEVQADAILQIQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K +  TPRRT I     +++D D I  E +++ ++  GY+KR+P+S + AQ R  +G++G
Sbjct: 455 KTQFATPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAG 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++D+D +        H SVLFFS  G VY  K +++P GS  +RG  ++ +L + + E
Sbjct: 515 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+I+   E  S     Y+V  TK GN+++  L  F  I  +G IA+ L+  D++  V 
Sbjct: 575 KITSIVSVSEFSSEE---YLVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               E+ +++ ++ G  + F     ++   GR + GV+ + L  GD++I M I+  A  +
Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRGVKSMKLKTGDELIGMDILPAAILN 691

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  M+    +   +S + EE ++++  +    NI             ++L ++  G
Sbjct: 692 TLNTDTEMEEEPTEVEELSDNIEETSNIEIATGEPANIL----------GPWVLIITIGG 741

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKR     FR+ NR+G+G+ AT          L  +  VN +++I++ +++G +IR  +
Sbjct: 742 YGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQSI 801

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           N I I SR   GV +    +D+ +  V  +       E   
Sbjct: 802 NAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAGDGEESE 842


>gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
 gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
          Length = 869

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/909 (40%), Positives = 561/909 (61%), Gaps = 91/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   ++++  LM+ I+ PDFPTGA I G  G+K+A+ TG+G IV+
Sbjct: 183 THNLSEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGKGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE T  + E+I+++EIPY VNKA +++ IA+LV EKRI  I+++ DESDRQG R+
Sbjct: 243 RGKAEIE-TENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P+   L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKMTALQSSFSVNNIALVNGRPKLLNLKDLIKAFVDHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P  A   LM+R          
Sbjct: 362 RRTKYDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q+RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK EL  +KD+    R+T IV    ++  ED    ++M++T+SH+GY+KR
Sbjct: 456 LENDDLCMKVIKDELQEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++L F++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ++G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNSKGRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++L+  + G+ +RF  +A+RV   R + GVRG+
Sbjct: 636 PRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVMG-RTASGVRGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L     D+V+ M  +   + +                                      
Sbjct: 695 TLDDDSNDEVVGMVCIKDKEKE-------------------------------------- 716

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE+G+GKR++  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 717 -------------TVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESE 901
            V + + I++++  G  IR+ V+++ +  RAT+GV + +  K ++ + SV ++    E E
Sbjct: 762 NVTEENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEE 821

Query: 902 IVDEAESTE 910
           I +E    E
Sbjct: 822 IAEEKAQRE 830



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 113/273 (41%), Gaps = 15/273 (5%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +  +  +   +    ++  +  G +K+  L  Y   R+   G + + +R++D + ++ + 
Sbjct: 601 VKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQ--NGVNAITLREDDGLIEVCMT 658

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           + +  VL  +  G   +     + +    A G      L  +  + +  ++   + E   
Sbjct: 659 NGNNEVLIANRNGRAIRFHENAVRVMGRTASGVR-GMTLDDDSNDEVVGMVCIKDKEKE- 716

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTT 700
               V+  ++ G  +R+ + D+   NR GK        +   ++++++  T+ENDI++  
Sbjct: 717 ---TVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIIN 773

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMS 759
           K G  +R  +S + V   R + GVR I+L K  D++ S+  VL   +  +E I   K   
Sbjct: 774 KSGITIRMKVSDLNVIG-RATQGVRLINLGKRNDEIASVCKVL---SQTEEEIAEEKAQR 829

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                 +     I +   +   +   S E   +
Sbjct: 830 EALEDAAIHEHPIENTDFEDVSDDVESNENADD 862


>gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 838

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/890 (38%), Positives = 513/890 (57%), Gaps = 91/890 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ YVK
Sbjct: 5   DRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RYTEC
Sbjct: 65  SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG  GIAVGMATNIP H
Sbjct: 125 RLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL E+ D    +++NPD D     +A ME I+GPDFPT  +I+G  GIK+AY TGRGSI 
Sbjct: 185 NLRELADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIVGTQGIKDAYTTGRGSIR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RGV+ IE   G R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR G 
Sbjct: 245 MRGVTSIE-EEGSRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGM 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA + EV
Sbjct: 304 RIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + ARR L+          
Sbjct: 364 IVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLID--------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +EL  +   I +  
Sbjct: 415 -----------------LLTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIADLK 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+S  R   I++ EL  + D+    RR++I+    D+ +ED I RE++VVT++  GY 
Sbjct: 458 DILASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITSTGYA 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 518 KRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ + N+L     ERI  ++     +S  +  Y+V AT  G V++++LSD+   
Sbjct: 578 ASRTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATVQGRVKKSRLSDYESA 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
              G IA+ L+  D+++    C+ E+D+LL ++ GQ +RF     ++   GR++ GV+G+
Sbjct: 635 RSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGM 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D +++M +V                                              
Sbjct: 695 RFRGDDHLLAMTVVRDG------------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      ++L  +  G+GKRTS  ++ +  R G G+     +   + G L+    V
Sbjct: 712 ----------SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP--KRGKLIGALAV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R 
Sbjct: 760 DNDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDRN 809



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 100/250 (40%), Gaps = 6/250 (2%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   + + D +  V    + ++ +   + G      I  ++  
Sbjct: 365 VRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLIDLLTIDEVQAD 424

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           A       R  +L +   +  +A +    AD  + +       A  R    +  +     
Sbjct: 425 AILAMQLRRLAALERQKIIDELAEIEAIIADLKDILASPGRQRAIVRDELKEIVDKYGDD 484

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             S +     +   ++L  +E  ++T++  G+ KRT    ++   R GKG+R  ++ + +
Sbjct: 485 RRSQIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDD 544

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVS 893
               +   F  + +D I+  ++ G + R+   E+  ASR  +G  + +  +   +ER+  
Sbjct: 545 ---VVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQ 601

Query: 894 VERIRESEIV 903
           V +I+  E  
Sbjct: 602 VIQIQSYEDA 611


>gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
 gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
          Length = 842

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/891 (39%), Positives = 547/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 ARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A ++LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A+                                        
Sbjct: 695 DEDGQDEVVGMICIKDPEAE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/858 (42%), Positives = 526/858 (61%), Gaps = 35/858 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ ++ NP   ++ LME +  PDFPT  +I G +G+++AY TGRG +V+R  
Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  +LE+IAELV+EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F VNMVAL   +P    L  ++ AF++ R E++ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P  A+  L+ ++W   + + ++ 
Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425

Query: 433 LID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            ++           D+ Y +  DG  YLSE Q + IL++RL RLTGL +D I  E   + 
Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDG-YYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVM 484

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL+   R+  II  E+ +++ E    RR+ I     D++ ED I  +D+VVT
Sbjct: 485 EQIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ YRAQRRGG+G+     +++D+V  LF+ +TH  +L FS+ G VY  
Sbjct: 545 ISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWM 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+  P+G   +RGK L+N+  L  GE+ITT++P    +      YV  AT  G V++  
Sbjct: 605 KVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQ---HYVFMATARGTVKKTP 661

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F+    +G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R +
Sbjct: 662 LTAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMG-REA 720

Query: 722 VGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            GVRG+ L     VI++ +       VL A  +   +   +   +   R   G     TS
Sbjct: 721 RGVRGMQLEADQSVIALLVAEDETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTS 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +N   V           L      I+ +++ G   RT   + R   R+ +G+    +  
Sbjct: 781 ERNGKVVAAC--------LVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIAL-- 830

Query: 835 INEIGALVAVFPVNDNDQ 852
            +    L+ V PV + D 
Sbjct: 831 -DAKAHLIQVQPVVEADD 847


>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
 gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
          Length = 820

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/901 (40%), Positives = 544/901 (60%), Gaps = 91/901 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E  +  + I+DE++ S+L Y+++VI  RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 2   DIFEGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+ MGK+HPHG+++IYDA+ RMAQ++S R  LI+G GNFGSVDGD  AA R
Sbjct: 62  SYSKSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A ++L D+ KDTVDF PNYD   +EP VL +++PN+LVNG  GIAVGMATN
Sbjct: 122 YTEVKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDID--------LDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IP HNLGEV+DG   +ID    +         + L+++I+GPDFPT  +++G  GI+ AY
Sbjct: 182 IPPHNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLMGTEGIQKAY 241

Query: 242 ATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
            TGRGS+ IR  + IEK    ++ QI+VTEIP+ VNK+ ++EKIAELV+EK+I  I DLR
Sbjct: 242 TTGRGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDLR 301

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL+R  +  +ILN LY++T ++  F +N++AL    P+  TL  +L+ 
Sbjct: 302 DESNRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDGTPKTLTLKAMLEY 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A ++EV++RRT + L KA+D AH++ GL  A+  +DEV+ IIR S N ETAR  LM R
Sbjct: 362 FIAHQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLMTR 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE Q++AIL++RL RLTGL R+ +  +   L
Sbjct: 422 --------------------------FEFSERQSQAILDMRLRRLTGLEREKLDAQFQKL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI   L +L S   +  IIK EL  ++ + D PRR+ I      M+ ED I  ED+V+
Sbjct: 456 SDEIAYHLAVLQSDKMVREIIKTELGEIRVKYDNPRRSIITIDTTKMDIEDLIADEDVVI 515

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR+PL+ YR+QRRGG+G +G+   + DFV  LFI STH  +LFFS+ G VY+
Sbjct: 516 TVTHKGYIKRLPLTTYRSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYR 575

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P     A+G A+IN+L+L+Q E+IT  +   + +   ++ Y++  T+ G +++ 
Sbjct: 576 LRAHAIPDAGRTAKGTAMINLLNLSQDEKITATIAVKDFK---DDSYLLTVTRKGIIKKT 632

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L ++    + G IA+ LD  DE+++V     ++DILL T  G+ +RFP + +R    R 
Sbjct: 633 ALEEYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPMG-RT 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L K + V+ + ++   D D +                               
Sbjct: 692 ARGVRGMKLGKKEYVVGVDVIGGYDKDME------------------------------- 720

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LT++E GF KRT   +FRI NR G G+    V+K  + G 
Sbjct: 721 -------------------LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNK--KTGK 759

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L  +  V   +++++++D G +IR  V+ I +  R+ +GV    T +D +VV++ +    
Sbjct: 760 LAGIKVVTSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMKTGEDNKVVALAKFVSK 819

Query: 901 E 901
           +
Sbjct: 820 D 820



 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 93/263 (35%), Gaps = 5/263 (1%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           +   V+  T  G ++R  L+ +    R   G   M     D +  +   +  + IL  + 
Sbjct: 510 DEDVVITVTHKGYIKRLPLTTYRSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFST 569

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  R         AGR + G   I+L    Q   +   +      D+           
Sbjct: 570 KGKVYRLRA-HAIPDAGRTAKGTAMINLLNLSQDEKITATIAVKDFKDDSYLLTVTRKGI 628

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRIS 820
            +  + +           ++  +  +E     + K    IL  +  G   R    D R  
Sbjct: 629 IKKTALEEYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPM 688

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R+ +G+R   + K   +  +  +   + + +++ +++ G   R  ++E RI +R   GV
Sbjct: 689 GRTARGVRGMKLGKKEYVVGVDVIGGYDKDMELLTMTENGFAKRTRLDEFRIQNRGGMGV 748

Query: 881 VIFST-AKDERVVSVERIRESEI 902
           +      K  ++  ++ +   E 
Sbjct: 749 IGHKVNKKTGKLAGIKVVTSEEE 771


>gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
 gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
          Length = 868

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/858 (42%), Positives = 526/858 (61%), Gaps = 35/858 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ ++ NP   ++ LME +  PDFPT  +I G +G+++AY TGRG +V+R  
Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E    G R+ I+V E+PYQVNK  +LE+IAELV+EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F VNMVAL   +P    L  ++ AF++ R E++ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P  A+  L+ ++W   + + ++ 
Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425

Query: 433 LID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            ++           D+ Y +  DG  YLSE Q + IL++RL RLTGL +D I +E   + 
Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDG-YYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVM 484

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL+   R+  II  E+ +++ E    RR+ I     D++ ED I  +D+VVT
Sbjct: 485 EQIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ YRAQRRGG+G+     +++D+V  LF+ +TH  +L FS+ G VY  
Sbjct: 545 ISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWM 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+  P+G   +RGK L+N+  L  GE+ITT++P    +      YV  AT  G V++  
Sbjct: 605 KVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQ---HYVFMATARGTVKKTP 661

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F     +G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R +
Sbjct: 662 LTAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPMG-REA 720

Query: 722 VGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            GVRG+ L     VI++ +       VL A  +   +   +   +   R   G     TS
Sbjct: 721 RGVRGMQLEADQSVIALLVAEDETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTS 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +N   V           L      I+ +++ G   RT   + R   R+ +G+    +  
Sbjct: 781 ERNGKVVAAC--------LVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIAL-- 830

Query: 835 INEIGALVAVFPVNDNDQ 852
            +    L+ V PV + D 
Sbjct: 831 -DAKAHLIQVQPVVEADD 847


>gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
 gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
          Length = 903

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/876 (43%), Positives = 538/876 (61%), Gaps = 49/876 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E  +   + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  +              
Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRG+ LA GDQV+S+ +      VL    +   +   +
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGDVLTVTENGYGKRTVL 782

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                + R   G      S +N S V     E+            + +++ G   RT   
Sbjct: 783 SEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED--------GDEFMMITDAGTLVRTRVA 834

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +     R+ +G+     ++   +  L  +  V + D
Sbjct: 835 EVSQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETD 870


>gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 886

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/936 (39%), Positives = 558/936 (59%), Gaps = 122/936 (13%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +++  I  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKP HRRIL+ M  +G+  +K 
Sbjct: 3   DQQGIIKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG++A+YD + RMAQD+S R  L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  ++ D+ K+TV+F+ NYDGS +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H LGEV+DG +A+  NPDI +  LM+ I GPDFPT   ILGR+GI+ AY TGRGS+++
Sbjct: 183 PPHQLGEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSLIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+T  DRE+I+VTE+PYQVNKA ++EKIA+LVREK+I  I DLRDESDR+G RV
Sbjct: 243 RAKAEIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E++R A+A VILN LY+ TS+Q+ F VNM+A+   +P   TL  +L  ++  ++E+V 
Sbjct: 303 VMEIRRDANASVILNNLYKQTSMQTTFGVNMLAIVSGRPRTLTLKEMLYHYLEHQKEIVR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA  R H+L GL IA+ +LDEV++IIR +   + AR +LM+R          
Sbjct: 363 RRTQFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q++AIL++RL RLTGL R+ I  E + +   I E   I
Sbjct: 413 ----------------FELSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S   LL +I+ EL  VK+  +  RRT I    ++ EDED I  +D+++T++  GY+KR
Sbjct: 457 LESDEVLLELIRTELEEVKERFNDQRRTEIRMDHIEFEDEDLIPEKDIIITLTSSGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    YRAQRRGG+G  G+   D D+VT L   STH ++LFF++ G VY+ + + +P  S
Sbjct: 517 LTTDSYRAQRRGGRGVQGIGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFP--------------------------------- 637
             ++G  +IN++ + + E++ T++P                                   
Sbjct: 577 RTSKGVPIINLIQIERDEKVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEE 636

Query: 638 -------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
                  E+        ++F T+ G V+R+ LS + +IN++G IA++L   DE+ SV   
Sbjct: 637 PEEALDAEEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLA 696

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           + E+++   +  G+ +RFPI+ +R    R + GV+ ++L+    VI M +          
Sbjct: 697 STEDEVFTVSNTGKAIRFPITNVRSMG-RGARGVKAMNLSADAIVIGMELARDE------ 749

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                          Q +L ++EKGFGK
Sbjct: 750 -----------------------------------------------QDVLVITEKGFGK 762

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           RT   +FR  +R GKG+ A+ V+  + +G +VA+  V+ +D I+++++ G +IR     I
Sbjct: 763 RTPMTEFRTQSRGGKGLIASKVT--DRVGQIVALRIVDVDDDIMIMTESGIVIRTDSQNI 820

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
               R  +GV +    + +RV +V ++++ + V+E 
Sbjct: 821 SSVGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEE 856



 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 109/245 (44%), Gaps = 16/245 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E  LD E+      +  ++ ++  G VKR PLS Y   R    G   + + ++D +T + 
Sbjct: 638 EEALDAEEVMQD-EQKSLIFMTRKGRVKRSPLSAY--ARINKNGLIAIRLFEDDELTSVR 694

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + ST   V   S+ G   +  +  +      ARG   +  ++L+    +  +      E 
Sbjct: 695 LASTEDEVFTVSNTGKAIRFPITNVRSMGRGARG---VKAMNLSADAIVIGM------EL 745

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILL 698
           + +   V+  T+ G  +R  +++F   +R GK  +     D +   +++     ++DI++
Sbjct: 746 ARDEQDVLVITEKGFGKRTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMI 805

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T+ G  +R   S      GRN+ GV+ I + +GD+V ++A +   DA  +E I   +  
Sbjct: 806 MTESGIVIRTD-SQNISSVGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEEGIVLEEGE 864

Query: 759 SAQRR 763
           +    
Sbjct: 865 TGSEE 869


>gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/894 (41%), Positives = 546/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLVITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811


>gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 812

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/892 (39%), Positives = 529/892 (59%), Gaps = 83/892 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             VSI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++G  + +   K AR
Sbjct: 3   QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YDAL RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   L D+ K+TVDFRPNYD +  EP VL  + PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+    + ++D P   ++ LM+ ++GPDFPT   +    G+ +AY TGRG++ +RG   I
Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEI 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+     + IV+ EIP+ +NK++++EKIA LV E++I  +ADLRDESDR+G RVVI+LKR
Sbjct: 243 EERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKR 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D+++N LY+YT L+S F +NM+A+ G +P+   L   L+ F+  R EV++RRT+Y 
Sbjct: 303 GTIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYD 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LM R                
Sbjct: 363 LRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGR---------------- 406

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q +AIL++RL RLT L  + +  E N L  +I+    +L +   
Sbjct: 407 ----------FTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEV 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  +I++E+  ++D   T RRT ++E  LD ++ ED I  ED+V+T+S  GY+KR  L  
Sbjct: 457 LRSVIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDN 516

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +GV   ++DFV D    + H  +L F++ G +++ KV R+P GS  A+G
Sbjct: 517 YQQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKG 576

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N++ L++ E +T ++   E      + Y +F T+ G V+R+  S + +  ++G IA
Sbjct: 577 VHIANLVQLDKDELVTNVLTVREFAE---DRYFLFVTRRGMVKRSSASLYAKCRKTGLIA 633

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V    +   I+LTT  G  +RF    +R    R++ GV+GI+L   D+V
Sbjct: 634 VGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPMG-RSATGVKGIALRGKDRV 692

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  I+   D                                                  
Sbjct: 693 VACVILAEEDTTS----------------------------------------------- 705

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I++VS  GFGKRT +  +R+ +R G G++   V+   + G ++   PV D+D ++L
Sbjct: 706 ---MIMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTP--KTGDVIGAMPVRDDDALVL 760

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++    ++R+ +N++R   RAT+GV +    +   VV  +RI E E+VD  E
Sbjct: 761 LTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGALVVGFDRIDEREVVDGEE 812


>gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 811

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 528/887 (59%), Gaps = 84/887 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I DE++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+   K AR+
Sbjct: 4   QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L+ GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   + D+ K+TV+FRPNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +VDG +  +D+P+  +  L  +++GPDFPTG       G+++AY TGRG++ IRG   +E
Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGRGLRDAYETGRGTVKIRGRVEVE 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +     + IV+ EIPY +NK++++EKIA L  E+RI  I DLRDESDR+G RVVI+LKRG
Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKRG 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++++NQLY+YT L++ F +NM+A+ G +P+  TL  + + F+  R EV++RRT Y L
Sbjct: 304 TIPEIVINQLYKYTPLETSFGINMLAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHYDL 363

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ N+DEVV +IR S  P  A+  LMQR                 
Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQR----------------- 406

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSEVQ +AIL++RL RLT L  + +  E   L  +I+    IL +   L
Sbjct: 407 ---------FSLSEVQAQAILDMRLQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVL 457

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G+I+ EL  +K+   TPRRT ++E  L+ ++ ED I  ED+V+T+S  GY+KR PL  Y
Sbjct: 458 RGVIRDELKELKETYATPRRTEMLEDELEGIDIEDLIPDEDVVITLSRRGYIKRTPLDSY 517

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + QRRGGKG +GV   D DFV D  + + H  +L F++ G +++ KV ++P GS  A+G 
Sbjct: 518 QQQRRGGKGIAGVHTGDGDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGM 577

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L + + E + T +   E        Y +F+T+ G V+R+  S + +  R+G IA+
Sbjct: 578 HINNLLPMEENEWVNTALTIRE---FTEEKYFLFSTRKGMVKRSSASLYAKARRTGLIAV 634

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V       +++LTT+ G  +RF    +R    R++ GV+GI+L++ D V+
Sbjct: 635 GLREGDELIMVREVDDNCEVVLTTEKGIAIRFGCGDVRPMG-RSATGVKGIALSQDDSVV 693

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +   V                                                       
Sbjct: 694 ACVTVQGGL--------------------------------------------------- 702

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  I+TVS  G+GKRT    +R+ +R GKG+    V+   + G ++    V  NDQ+IL+
Sbjct: 703 ESEIMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTP--KTGEVLGAMTVVSNDQLILL 760

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    +IR+ V E+R   RAT+GV +    + + VV  +R+ E E  
Sbjct: 761 TSTNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVVGFDRVSEQEQE 807


>gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 804

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/886 (41%), Positives = 530/886 (59%), Gaps = 85/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M+Q G+  N+K+ K A
Sbjct: 4   VLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+ A+YDA+ R+AQDW+LR  L++GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  GVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TVDF+PN+DG+  EP VL A +PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  VA+ID P+I LD +M  + GPDFPTG   L + GI+ AYATGRGS+ +R    
Sbjct: 184 SEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGG-RLHKGGIREAYATGRGSLKLRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R  +VVTEIPYQVNKA ++ +IA LV+ K+I DIA LRDESDRQG R+ IELK
Sbjct: 243 QE-EKNGRVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+ DV+LNQL+++T+LQ+ F+VNM+A+   +P    L+ +++ ++  R +VV RRT++
Sbjct: 302 RGANPDVVLNQLFKHTNLQTSFTVNMLAIVDGEPRVLPLLELMRHYLEHRRQVVTRRTRF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ NLDEV+ +IR S +   A+  L+ R               
Sbjct: 362 ELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIAR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+EVQ +AIL++RL RLTGL R+ I+ E   L   I     IL   +
Sbjct: 407 -----------FGLTEVQAQAILDMRLQRLTGLEREKIQAEHRELQETIAYLRAILEDEA 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G++K+ELL+VK+     RRT I E       ED I  E MV+T++  G++KR PL  
Sbjct: 456 RLWGVVKEELLAVKERHGDTRRTVINEFAGGFNPEDLIEDEPMVITMTAAGFLKRTPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      +DED  T LF+ + H  +LFF++ G VY+EKV+ LP  S QARG
Sbjct: 516 YRAQGRGGVGVQASRSKDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + +IL L + E + T++            + VFAT+ G +++  + ++  +  SG IA
Sbjct: 576 VHIRSILPLAEDEEVATLLSVR---GLTIPGHFVFATRRGLIKKTPIREYQNLTASGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++ V    ++ +++L T+ GQ +RF ++ +R   GR S GVRG+ L  GD+V
Sbjct: 633 INLVDGDTLIQVGVAQEDAEVILATRNGQAIRFALTEVRA-TGRASQGVRGVRLKDGDEV 691

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S+ +V                                                      
Sbjct: 692 VSLIVVPKGWTG------------------------------------------------ 703

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L V  +G+GKRT   ++    R G G+     +   ++G L A+  V  ++ +++
Sbjct: 704 ---DLLAVGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTP--KVGQLAALLAVEGDEDLLV 758

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +S +G  IR  V+++   SRAT GV I +  +++ + +   IR  +
Sbjct: 759 LSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRPQD 804


>gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
 gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
          Length = 923

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/899 (42%), Positives = 546/899 (60%), Gaps = 67/899 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+    G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   
Sbjct: 423 AMVERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED V
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE--------- 640
             + + +P  S  ARG+ L+N+L L++GERIT ++             +D+         
Sbjct: 602 WLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVL 661

Query: 641 ---------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
                                +     Y+  AT  G V++  L  F +   SG IA+KL+
Sbjct: 662 EGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLE 721

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D +++        +++L +  G+ +RF  S +R+   RN+ GVRG+ L KG Q+ISM 
Sbjct: 722 EGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMG-RNARGVRGMRLGKGQQLISML 780

Query: 740 I------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           I      +L A      +   +     + R   G    +T+ +N + +     +E     
Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQE----- 835

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               + I+ +S++G   RT   +  +S R+ +G+    ++    +  L  V   +  D 
Sbjct: 836 ---GEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDD 891



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 103/251 (41%), Gaps = 16/251 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+ PL  +   R    G   + + + D +    I      V+ FS
Sbjct: 685 PTGAYIFMATAFGTVKKTPLVQFSRPRSS--GLIALKLEEGDTLIAAAITDGAKEVMLFS 742

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V +     + I    ARG   +  + L +G+++ +++  PE     +   ++ A++
Sbjct: 743 SAGKVIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML-IPE-----SGAQILTASE 793

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  LS F +  R G   IAM  +     +++     +  +I+L +  G  VR  +
Sbjct: 794 RGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRV 853

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDT 769
             + + +GRN+ GV  I LA  + ++ +  V   +  D ++     +   +       ++
Sbjct: 854 DEVSL-SGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESES 912

Query: 770 EEITSLKNDSS 780
           E     + +  
Sbjct: 913 EPAAEAEGNEE 923


>gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
 gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
          Length = 846

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 535/900 (59%), Gaps = 69/900 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  + +  V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  LI+GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL  R PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++  C+A+ID+P + +  LM  I GPDFPT  ++ G  GI+ AY TGRG I 
Sbjct: 182 IPPHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGARGIQEAYLTGRGRIF 241

Query: 250 IRGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H+E   G  ++ I+VTE+PY VNKA +LEKI  LV+EK+IV I  LRDESD+ G 
Sbjct: 242 MRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL+R    +V+LNQLY +T LQS+F +NMVAL   +P+   L   L+AF+  R+EV
Sbjct: 302 RMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEAFLRHRQEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAHVL GLAIA+AN+D ++ +I+ S +P  AR  L+ R W    + 
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 429 DLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D++      S       T          LS  Q +AILE+RL RLTGL +  I +E   +
Sbjct: 422 DMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            I I   L+IL++  RL+ +I++E + ++++  TPRRT I +  +D+  ED I  E++VV
Sbjct: 482 IIFILGLLEILANPERLMAVIREEFMEMREQYSTPRRTEIQDNHVDLRLEDLIQEENVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY 
Sbjct: 542 TLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KV+ LP GS  ARGK  +N+L                                      
Sbjct: 602 KKVYELPQGSRVARGKPFVNLL-------------------------------------- 623

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +  +IN              +LS+    ++  I + T  G   +  ++    F+   
Sbjct: 624 PLEEGERIN-------------TVLSIREFEKDKYIFMVTASGVVKKTSLAD---FSRPR 667

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G+  + L +GDQ++   +         E + +       R           + +    
Sbjct: 668 SSGIIALDLREGDQLVGADLT----DGVQEIMLFSSGGKVIRFSERDVRPVGRTARGVKG 723

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E          +      ILT +E G+GKRT+  ++R+  R G+GI +   +  N  G 
Sbjct: 724 MELPSEHRVIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGRGIISIRTTPRN--GE 781

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V   D+++L+SD GTLIR PV+ I +  R T+GV + +  + ER+V +ERI E 
Sbjct: 782 VVGAVQVEKEDEVVLISDGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVED 841


>gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/860 (42%), Positives = 533/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+R GLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFSA---DKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L  G QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLEDGQQVIAMLVAGGEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
          Length = 826

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/904 (40%), Positives = 544/904 (60%), Gaps = 86/904 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM++I GPDFPTG +I+GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +LK ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDGAPHFLTLKQMLKYYLDHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTK+ L KA  RAH+L GL IA+ ++DE+V+IIR S + + A+  L+ R      
Sbjct: 363 DVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVISIEDEDLIEKQNVLLTLTHK 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ ++ Q RGGKG  G+ +++ DF   L   STH  +LFF++ G VY +K + 
Sbjct: 517 GYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L +GE+I T++  PE     ++ Y+ F TK G V+R  +S+F
Sbjct: 577 IPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPE---GADDNYLFFITKMGTVKRTHVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R    R + GVR
Sbjct: 634 SNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPMG-RTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+                                                 
Sbjct: 693 GINLRDNDYVVG------------------------------------------------ 704

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E+      ++ +SEKG+GKRT + ++ I  R GKGI+ T+VS+ N  G L  V 
Sbjct: 705 -----SEVIKPNDEVMVISEKGYGKRTPASEYPIKGRGGKGIKTTNVSEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+ +  I++++  G +IR  ++++    R T GV +     D +V S+  +   +  + 
Sbjct: 758 VVDGSKDIMVITTDGIMIRFKISDVPQTGRNTLGVRLIKVNGDSKVSSLAIVPTEDDQET 817

Query: 906 AEST 909
            +++
Sbjct: 818 TDNS 821


>gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
 gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
          Length = 860

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/854 (42%), Positives = 529/854 (61%), Gaps = 37/854 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+     R
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + +I+ +P P  A++ELM RSW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERISAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L  G  VI++ +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGR 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +   Q        I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVDPEAQ--------IMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAVFPVNDNDQI 853
            L  V       +I
Sbjct: 829 GLQQVAEAEGESEI 842


>gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
 gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
          Length = 824

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/875 (40%), Positives = 528/875 (60%), Gaps = 85/875 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+     
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG   + +    +E
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+VI+++R  SA VIL
Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV RRT++  NKA  RA
Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S + + A+  +M+R                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMER------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL RD I NE   L   I +  DIL++  R+L II+ E
Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTE 454

Query: 505 LLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  +       RRT + V  +L +EDED I  E++V+T+++ GY+KRV  S +RAQRRGG
Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P     A+G  +IN+L 
Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           ++  ERI  I+            Y+ F T+ G V+R  ++ F  I  +G IA+ L   DE
Sbjct: 575 IDSSERIEAIISASG--GPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     E+ +++ T  G  V F  + +R    R + GVRGI L  GD V+  A++  
Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDMG-RTAAGVRGIRLRDGDYVVGAAVI-- 689

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                               ++  +L +
Sbjct: 690 ---------------------------------------------------TEDSEVLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+  + I++++DKG LI
Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           R  V  +    RAT GV +     + +VV++  + 
Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTMATVE 791


>gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/873 (43%), Positives = 536/873 (61%), Gaps = 39/873 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+
Sbjct: 2   DQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGSVDGD  AA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A+ +L D+ KDTVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG + V+ N D  +D L+EII  PDFPT  +I G +G+++ Y TGRG IV
Sbjct: 182 IPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGRIV 241

Query: 250 IRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H  E     R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L +AR+R HVL GLA+A+AN+D+ + II+ +P P  A+ ELM R+W++S ++
Sbjct: 362 VTRRTIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    + +               Y I  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLVRTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
            NE   +  +I + LDILS   R+  II  EL + K E        RR+ I     D+  
Sbjct: 482 VNEYKEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERRSYIEHNATDLGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P+S YR+Q+RGG+G+  +  +D+D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE++T I+P   D  S   + Y+
Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSFPEDRYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             +T  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQ 761
             + +R    R + GVRG++L +G QVI++ +       VL A  +   +   +   +  
Sbjct: 722 DENDVRPMG-RTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGYGKRTPITEYTRH 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            R   G     TS +N   V   + E            I+ ++  G   RT   + R   
Sbjct: 781 GRGTKGMIAIQTSERNGRVVAATLVE--------PSDEIMLITTGGVLIRTRVAEIREMG 832

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQ 852
           R+ +G+    V    ++  L  +    V + D 
Sbjct: 833 RATQGVTLIAVEDGTKLSGLQRIVEPDVEEGDD 865


>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
 gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
          Length = 861

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/899 (40%), Positives = 534/899 (59%), Gaps = 89/899 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +  E+   S  +   M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MSEEV----KHFEETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R  LI+G GNFGSV
Sbjct: 57  SELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDT++FR NYD + +EP VL AR PN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGAT 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+     ++ NPD+    LME + GPDFPTG ++LG++GI+ A
Sbjct: 177 GIAVGMATNIPPHNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVLGKSGIRRA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +RG   IE+    +E+I++TE+PY VNKA ++E+IA+L  EK+I  I  L 
Sbjct: 237 YETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLN 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE++R  SA V+LN LY+ T LQS F  NM+A+   +P+  +L  IL+ 
Sbjct: 297 DESDRVGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVNQEPKVLSLKEILRH 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEVV RR+ +   KA DRAH+L GL IA+ ++D +V I+R S + + A+   M  
Sbjct: 357 YLDHQEEVVRRRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNE 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++R+ RLTGL R+ I  E N L
Sbjct: 417 --------------------------YGLSDKQAQAILDMRMVRLTGLEREKIDAEYNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I+    +L+S      II+QELL ++   D PRRT + V   L +EDED I +ED+V
Sbjct: 451 QATIQYLEKVLASEELRYEIIEQELLEIQQRFDNPRRTELLVGEALSLEDEDLIEQEDVV 510

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++  GY+KR+  + ++AQRRGG+G  G+ + D+D+V ++   STH S+LFF++ G VY
Sbjct: 511 ITLTKNGYIKRLANTEFKAQRRGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  A+G  +IN+L+++  E+I  I+  PE + +    Y+ F T  G V+R
Sbjct: 571 QAKGYEIPEYSRTAKGLPVINLLNIDSAEKIQAIISVPESDET--ERYLFFTTLRGTVKR 628

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +LS+F  I  +G  A++L   DE++ V   +  + I+L T  G  V F    +R    R
Sbjct: 629 VRLSEFKNIRTNGLRAIQLREDDELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAMG-R 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+SL  GD VI M                                         
Sbjct: 688 TASGVRGVSLRDGDYVIGM----------------------------------------- 706

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       ++   +  +L VSEKG+GKRT++ ++ +  R GKG+R   +++ N  G
Sbjct: 707 ------------DILTPDNEVLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKN--G 752

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV +  V  ++ ++++++KG +IR    ++    R   GV +    +D  V S+  + 
Sbjct: 753 PLVCLRTVTGDEDLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSLAIVD 811


>gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20]
 gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20]
          Length = 842

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/891 (39%), Positives = 546/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG+ ++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 ARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A ++LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A+                                        
Sbjct: 695 DEDGQDEVVGMICIKDPEAE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812


>gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
 gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
          Length = 824

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/875 (40%), Positives = 528/875 (60%), Gaps = 85/875 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+     
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG   + +    +E
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+VI+++R  SA VIL
Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV RRT++  NKA  RA
Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S + + A+  +M+R                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL RD I +E   L   I +  DIL++  R+L II+ E
Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTE 454

Query: 505 LLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  +       RRT + V  +L +EDED I  E++V+T+++ GY+KRV  S +RAQRRGG
Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P     A+G  +IN+L 
Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           ++  ERI  I+            Y+ F T+ G V+R  ++ F  I  +G IA+ L   DE
Sbjct: 575 IDSSERIEAIISASG--GPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     E+ +++ T  G  V F  + +R    R + GVRGI L  GD V+  A++  
Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDMG-RTAAGVRGIRLRDGDYVVGAAVI-- 689

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                               ++  +L +
Sbjct: 690 ---------------------------------------------------TEDSEVLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+  + I++++DKG LI
Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           R  V  +    RAT GV +     + +VV++  + 
Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTMATVE 791


>gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7]
 gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7]
          Length = 921

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/899 (42%), Positives = 545/899 (60%), Gaps = 67/899 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+    G REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  YLS  Q +AILELRL RLTGL  + + +E   
Sbjct: 423 AMVERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED V
Sbjct: 482 ILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------- 636
             + + +P  S  ARG+ L+N+L L++GERIT ++                         
Sbjct: 602 WLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVL 661

Query: 637 -----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
                             E  +     Y+  AT  G V++  L  F +   SG IA+KL+
Sbjct: 662 EGEVVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLE 721

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D +++        +++L +  G+ +RF  S +R+   RN+ GVRG+ L KG Q+ISM 
Sbjct: 722 EGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMG-RNARGVRGMRLGKGQQLISML 780

Query: 740 I------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           I      +L A      +   +     + R   G    +T+ +N + +     +E     
Sbjct: 781 IPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQE----- 835

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               + I+ +S++G   RT   +  +S+R+ +G+    ++    +  L  V   +  D 
Sbjct: 836 ---GEEIMLISDQGTLVRTRVDEVSLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDD 891



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 15/226 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +         +   +  G VK+ PL  +   R    G   + + + D +    I      
Sbjct: 680 ELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSS--GLIALKLEEGDTLIAAAITDGAKE 737

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ FSS G V +     + I    ARG   +  + L +G+++ +++  PE     +   +
Sbjct: 738 VMLFSSAGKVIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML-IPE-----SGAQI 788

Query: 649 VFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + A++ G  +R  LS F +  R G   IAM  +     +++     +  +I+L +  G  
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTL 848

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           VR  +  + + + RN+ GV  I LA  + ++ +  V       DE 
Sbjct: 849 VRTRVDEVSL-SSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEE 893


>gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
 gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/906 (39%), Positives = 552/906 (60%), Gaps = 89/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D CVA IDN DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYMTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++IVVTEIPY VNKA +++ IA+L  EK+I  I++  DESDR+G R+V
Sbjct: 243 AKAEIE-TSSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +K +    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKTKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   + +                                        
Sbjct: 695 DEDGQDEVVGMICIKDPETE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIV 903
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++    E +I+
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSETEEDII 821

Query: 904 DEAEST 909
            E +S 
Sbjct: 822 AEEDSD 827


>gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684]
 gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684]
          Length = 883

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/908 (41%), Positives = 547/908 (60%), Gaps = 89/908 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D+     I   ++ +EM+++YL YA++VI+GRA+PD+RDGLKPVHRR+LF M +MGV+
Sbjct: 3   ATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMGVQ 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+   K +RI GEVMGKYHPHG+A+IYD L RMAQD+S+R LL++GQGNFGSVD DP A
Sbjct: 63  PNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDPAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + A  +L D+  DTVDF PNYDG  QEP+VL AR+PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E +   +A I+NP+ID+D LM+ IRGPDFPTG +ILG  GI++AYATGRG
Sbjct: 183 ATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTGGIILGVGGIRDAYATGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDES 303
            + ++  +HIE  S  +E IVVTE+PYQV       +++KIA+LV EK+I +I DLRDES
Sbjct: 243 RVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLRDES 302

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R VIELKR     V+LN+LY++T +Q+ F VNMVAL    P+  +L  ++  +V 
Sbjct: 303 DRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVDNVPKTLSLREVIGRYVD 362

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+VRRTKY L +A DRAH+L GL IA AN+DEV+ IIR S + E AR  L+ R   
Sbjct: 363 HQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVNR--- 419

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q  AIL++ L RLT L  D +R E   L   
Sbjct: 420 -----------------------FELSERQAEAILQMTLGRLTALEVDKLRQEHADLMER 456

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E  +IL    R + IIK+EL  + D     RRT I     +++ ED I  + MV+T++
Sbjct: 457 IRELREILGDEDRQMAIIKEELQEISDAYGNERRTAISYAEGEIDIEDLIADQQMVITIT 516

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K +PL+ YR QRRGG G +G+ M+D D++  LF+ STH  +LFF++ G VY+ KV
Sbjct: 517 KTGYIKSLPLATYRQQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKV 576

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP  S  A+G+AL+NIL L +GER+ +++   +   +    Y++FAT+ G V++ +L 
Sbjct: 577 YELPEASRTAKGRALVNILPLREGERVQSVLSTRDFSEA---PYLLFATRKGTVKKTELQ 633

Query: 664 DF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +   I   G IA+K+   DE+++V    + +++++ ++ G  VRF     R    R++ 
Sbjct: 634 AYNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMG-RDTS 692

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ +    +VI+M I                                          
Sbjct: 693 GVRGMDVGDSGEVIAMDIARD--------------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +Q +L ++E GFGKRT   ++R + R  KG+R   +++    G L 
Sbjct: 714 --------------DQDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTEA--RGGLA 757

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V ++ +++ +S  G + R  V  I    RA++GV + +  +D+ V ++  + ES+ 
Sbjct: 758 GALVVREHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIALVVESDT 817

Query: 903 VDEAESTE 910
            +  E+ E
Sbjct: 818 AEADEALE 825


>gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 882

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/908 (38%), Positives = 513/908 (56%), Gaps = 93/908 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ 
Sbjct: 30  DHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRS 89

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA RY
Sbjct: 90  FNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRY 149

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATNI
Sbjct: 150 TETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNI 209

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HNL EV +G    + NP    D L    M  I+GPDFPTGA ILG  GI++AY TGRG
Sbjct: 210 PPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRG 269

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           SI +R V ++E+    R  +VVTE+PYQ N   +  KIAEL+++ ++  IADLRDE+  R
Sbjct: 270 SITMRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGR 328

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VI LKR AS  V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  +
Sbjct: 329 TGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQ 388

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM+      
Sbjct: 389 MDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME------ 442

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + E Q +AIL ++L RL  L R  I++  + L   I 
Sbjct: 443 --------------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIA 482

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSH 544
           E   I++S +R   II +EL  + +     RRT+I+ G   DM  ED I  E++VVT++ 
Sbjct: 483 EYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITR 542

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K +
Sbjct: 543 GGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGY 602

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L      A+G+ + N+L    GE I  +M   E +S  +  Y+V AT+ G V++++LSD
Sbjct: 603 ELQEAGRDAKGQHIANLLEFQGGEHIAQVM---ELKSYEDAEYLVLATRGGMVKKSRLSD 659

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
           +     +G IA+ L   DE++S  T + ++DILL ++ G  +RF      +   GR++ G
Sbjct: 660 YDTNRTAGLIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPMGRSTSG 719

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+   +GD++I                                               
Sbjct: 720 VTGMKFREGDELI----------------------------------------------- 732

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +  +  F+  V+E G+ KRTS  ++R+  R+G GI+   + +  + GALV 
Sbjct: 733 ------SANVVTEGSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVE--DRGALVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V++ D++++V   G ++R  VNE+    R T GV+     K + ++ V R ++ ++ 
Sbjct: 785 GLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLD 844

Query: 904 D-EAESTE 910
           D + E+TE
Sbjct: 845 DSDDETTE 852



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 13/265 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + +       + +V  +  G VK+  LS Y   R    G   + +R+ D V   F
Sbjct: 626 EHIAQVMELKSYEDAEYLVLATRGGMVKKSRLSDYDTNRTA--GLIAINLREGDEVVSAF 683

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            VS    +L  S  G   +       +  P  R  + +  +   +G+ + +     E   
Sbjct: 684 TVSAQDDILLVSRNGMSLRFHADDASL-RPMGRSTSGVTGMKFREGDELISANVVTE--- 739

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                +V   T+ G  +R  + ++    R+G   K+A  ++ R  ++      +E+++L+
Sbjct: 740 ---GSFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLV 796

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++ +     R+++GV      KGD +I +A       D  +        
Sbjct: 797 VMASGKVVRSNVNEVPAKG-RDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDDETTENTE 855

Query: 759 SAQRRLISGDTEEITSLKNDSSVEG 783
           +++     G   E  +   D +  G
Sbjct: 856 ASESSEAPGTDNEGEAAAADLTATG 880


>gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/894 (41%), Positives = 548/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811


>gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01]
 gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01]
          Length = 805

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/887 (42%), Positives = 529/887 (59%), Gaps = 86/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDALAR+AQ W+LR  L++GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ K+TVDFRPNYDGS +EP VL +  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+IDNP I L+ +M  + GPDFPTG   L R GI+ AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGK-LSRKGIQEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 IE-EKGQRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGAS  V+LNQLY++T+LQ+ F+VN++A+   +P+   L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGASPQVVLNQLYKHTALQTSFTVNLLAIVNGEPKVLPLLSLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR+ LM+R               
Sbjct: 362 DLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RL  L R+ +  E   L  EI     IL    
Sbjct: 407 -----------FGLSEIQAQAILDMRLQRLVALEREKLLEEYRELMEEIARLKAILEEEG 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL   +K++LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLWAEVKKDLLRVKEKYGDARRTVITEFEDSFNPEDLIEDEPMVITLTAQGFLKRLPLES 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED    +F+   H  +L F++ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLIAGKTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             +  +L L + E +  ++     +      Y+VFAT+ G V+R  L ++  +  +G IA
Sbjct: 576 VHVKTLLPLAEEEEVAALLSVRGLDGEG---YLVFATERGLVKRTALREYQNLGAAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734
           ++L   D ++ V     E++ +L T+ GQ +RF +  +R   GR+S GV GI   K GD+
Sbjct: 633 IRLLEGDRLIGVALSDPEDEAILATEEGQAIRFALEEVRA-TGRDSQGVTGIRFKKPGDR 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+  V   +                                                 
Sbjct: 692 VVSLVTVKPGEM------------------------------------------------ 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   + ++
Sbjct: 704 ---VDLLAVSTRGYGKRTPLAEYPLQGRGGMGVITYKVST--KVGRLAALLKVRGTEDLL 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++S KG  IR PV +IR  SR T GV + +  +D+ VVS   + E +
Sbjct: 759 VLSKKGLAIRTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEEQ 805



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 105/276 (38%), Gaps = 62/276 (22%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQ 692
            F  ++   +   V+  T  G ++R  L  +    R GK  IA K    DE + V     
Sbjct: 486 SFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAGKTKEEDEAIQVFVAQA 545

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYD 749
             D+LL T  G+  R  +  +     R + GV     + LA+ ++V ++  V   D    
Sbjct: 546 HEDLLLFTNRGRVYRLKVYELPEMG-RQARGVHVKTLLPLAEEEEVAALLSVRGLDG--- 601

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                          E +++  +E+G  
Sbjct: 602 -----------------------------------------------EGYLVFATERGLV 614

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT+  ++   N    G+ A  + + +    L+ V   +  D+ IL +++G  IR  + E
Sbjct: 615 KRTALREY--QNLGAAGLIAIRLLEGDR---LIGVALSDPEDEAILATEEGQAIRFALEE 669

Query: 870 IRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +R   R ++GV      K  +RVVS+  ++  E+VD
Sbjct: 670 VRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVD 705



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 97/286 (33%), Gaps = 61/286 (21%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD  DE++++   +Q+       + G   RF +S I+  A  +    R ++L +  
Sbjct: 376 LLIALDHIDEVIALIRASQD---ASEARKGLMERFGLSEIQAQAILDMRLQRLVALEREK 432

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +     ++   A     +     + A+ +      +E       + +         ++L
Sbjct: 433 LLEEYRELMEEIARLKAILEEEGRLWAEVKKDLLRVKEKYGDARRTVITEFEDSFNPEDL 492

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN----------------- 836
              E  ++T++ +GF KR     +R   R GKG+ A    + +                 
Sbjct: 493 IEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAGKTKEEDEAIQVFVAQAHEDLLLF 552

Query: 837 ---------------------EIGALVAVFPVNDNDQ---------------IILVSDKG 860
                                    +  + P+ + ++               ++  +++G
Sbjct: 553 TNRGRVYRLKVYELPEMGRQARGVHVKTLLPLAEEEEVAALLSVRGLDGEGYLVFATERG 612

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            + R  + E +       G++     + +R++ V     S+  DEA
Sbjct: 613 LVKRTALREYQNLG--AAGLIAIRLLEGDRLIGVAL---SDPEDEA 653


>gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54]
 gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54]
          Length = 822

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHXAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVT  PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVIIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/873 (42%), Positives = 538/873 (61%), Gaps = 39/873 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VKCAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A  LL DL K+TVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG + V+ N D  +D L+EII  PDFPTG +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H  E    +R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A+ +LM R+W++S ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    +                 Y I +DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
            NE   +  +I + LDIL+   R+  II  EL   K+E        RR+ I     D+  
Sbjct: 482 VNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIELNATDLGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P+S YRAQ+RGG+G+  +  +D+D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P   E+ +   + Y+
Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQ 761
             + +R    R + GVRG++L +G QVI++ +       VL A  +   +   +   +  
Sbjct: 722 DENDVRPMG-RTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            R   G     TS +N   V   + +            I+ ++  G   RT   + R   
Sbjct: 781 GRGTKGMIAIQTSERNGKVVAATLVD--------ASDEIMLITTGGVLIRTRVAEIREMG 832

Query: 822 RSGKGIRATDVSKINEIGALVAVFP--VNDNDQ 852
           R+ +G+    V    ++  L  +    V  +D 
Sbjct: 833 RATQGVTLIAVEDGTKLSGLQRILESDVEVDDD 865


>gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003]
 gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003]
          Length = 862

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/854 (42%), Positives = 526/854 (61%), Gaps = 37/854 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NPD  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+     R
Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L  G  VI++ +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGK 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +   Q        I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVDPEAQ--------IMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAVFPVNDNDQI 853
            L  V        +
Sbjct: 829 GLQQVAEAEAEGDL 842


>gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 818

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/897 (40%), Positives = 537/897 (59%), Gaps = 95/897 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + K
Sbjct: 7   DKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVDF+PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDL-----DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EV+   V +IDN   +      + +++II+GPDFPTGA ILG  GI+ AY TGRG I
Sbjct: 187 NLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTRGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V++IE     +  I+VTE+PY VNKA ++EKIA+LV+EK+I  I  L DES R+G 
Sbjct: 247 RVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGILKAFVA 363
           R+ IEL+R  +A+VILNQLY++T LQ  F V M+A+        +P+   L+ +L  ++ 
Sbjct: 307 RINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDYYLK 366

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+  LM R   
Sbjct: 367 HQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMAR--- 423

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++ Q +AI+++RL  LTGL R+ +  E   L   
Sbjct: 424 -----------------------FELTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKR 460

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+    LLG+IK+E+  + D+    R+T I     D   ED I  E++V+T++
Sbjct: 461 IGELKAILADEKLLLGVIKKEITEISDKYGDDRKTSIGFDEFDFTVEDLIPEENVVITMT 520

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    +++Q RGGKG  G+   DED + +LF+ STH  ++FF++LG VY+ K 
Sbjct: 521 RLGYIKRMTPDNFKSQNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKA 580

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT ++P  E      + Y+  ATK G V++  ++
Sbjct: 581 YEIPEAGRTARGTAIINLLQLAPEEKITAVIPIREYNE---DHYLFMATKKGLVKKTPIT 637

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+      DILL T  GQC+RF  + +R   GR S+G
Sbjct: 638 DYANVRKTGLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRS-TGRVSMG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI+L  GD+V+ M +                                           
Sbjct: 697 VIGINLMDGDEVVGMQL------------------------------------------- 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       + +++L VSEKG GK T+  +F++ NR GKG++   + +  + G ++A
Sbjct: 714 ----------DCQGEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKILE--KTGNVIA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              VN +  I++++ +G +I++P ++I + +R T GV + +  KD +V S+ ++RES
Sbjct: 762 AKAVNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASITKVRES 818



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 25/241 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ DE++          I+  ++  Q  +  + A        +  +  + L    
Sbjct: 393 LLIALDNIDEVI---------HIIRGSRSTQIAKESLMARFELTDAQAQAIVDMRLRTLT 443

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + +++ +    L       E    +        +I  +  EI+    D        +E
Sbjct: 444 GLERERLEAEYAELM--KRIGELKAILADEKLLLGVIKKEITEISDKYGDDRKTSIGFDE 501

Query: 789 ---RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                ++L  +E  ++T++  G+ KR +  +F+  NR GKGI+       + I  L   F
Sbjct: 502 FDFTVEDLIPEENVVITMTRLGYIKRMTPDNFKSQNRGGKGIKGMQTIDEDNIEEL---F 558

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEI 902
             + ++ ++  ++ G + R+   EI  A R  +G  I +    A +E++ +V  IRE   
Sbjct: 559 MTSTHEYLMFFTNLGKVYRLKAYEIPEAGRTARGTAIINLLQLAPEEKITAVIPIREYNE 618

Query: 903 V 903
            
Sbjct: 619 D 619


>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 835

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/911 (39%), Positives = 547/911 (60%), Gaps = 86/911 (9%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +     DE+E     I   +I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+
Sbjct: 1   MPKEKNIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M +MG++ N  Y K ARI G+V+GKYHPHG++A+Y A+ RM QD+SLR  +I+GQGNFG
Sbjct: 61  AMKEMGLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA RYTE R+      +L DL K+TVDF PNYDGS +EPV+L  + P++L+NG
Sbjct: 121 SIDGDFAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLING 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HN+ EV D  V +ID+ +I +  +++ I+GPDFPTGA+ILG++GIK
Sbjct: 181 SAGIAVGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIILGKSGIK 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +    GRGS+ IR  + IE+    RE I+V EIPYQVNKA ++  IA+LV++K+I  IAD
Sbjct: 241 DYMEKGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+VIE+KR A+  V+LNQLY++T +Q  F V M+AL   +P+   +  IL
Sbjct: 301 LRDESDRDGIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNNRPKVMNVKEIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
              +  R+ +++RRTK+ L KA  R H+L GL IA+ N+D V++II+ S + + AR  LM
Sbjct: 361 IHHIEHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            +                          + L+++QT AILE+++ +LTGL R +I +E  
Sbjct: 421 SK--------------------------LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYL 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I++   +L+   ++L IIK E L +K +    RRT+I     D   ED I  E++
Sbjct: 455 ELIRLIEKLRSVLADPKKVLDIIKNEALDIKRKYGDKRRTQIQAAEADFNIEDLIQEEEV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            VT+SH GY+KR+PL  Y+AQ RGG+G + +  R+EDFV +LFI S+H+ +LFF++ G +
Sbjct: 515 AVTMSHAGYIKRIPLDTYKAQHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRL 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDE-SSWNNLYVVFATKHGN 656
           Y  +++ +P G+  ++GKA++N+L L    E+IT  +P          + Y++  T++G 
Sbjct: 575 YWMRIYEIPEGARTSKGKAIVNLLQLQGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGI 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++  L  FI   + G IA+KL+  D +  V+   +  ++++ TK G  +RF  S IRV 
Sbjct: 635 IKKIALDKFINPRKRGIIAIKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVI 694

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R   GV+GI L KGD+VI M +    D                               
Sbjct: 695 G-RAGRGVKGIELKKGDEVIGMEVFSPDDV------------------------------ 723

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                   L++SE G+GKRT    +R+  R+G G+    +S+ N
Sbjct: 724 -----------------------FLSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERN 760

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G ++ +   ND +++++++  G  IR+ VN I +  R T+GV +      ++V ++  
Sbjct: 761 --GNMIGIKKANDGEEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIAC 818

Query: 897 IRESEIVDEAE 907
           + + E  +E +
Sbjct: 819 VVKDENSEEPQ 829


>gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
 gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
          Length = 830

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/859 (42%), Positives = 515/859 (59%), Gaps = 90/859 (10%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP 
Sbjct: 61  VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R 
Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRS 180

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 181 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 240

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RR
Sbjct: 241 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRR 300

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++
Sbjct: 301 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 360

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 361 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 420

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 421 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 480

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 481 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 540

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  
Sbjct: 541 QLPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQ 597

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-------- 716
           F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S             
Sbjct: 598 FANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPV 657

Query: 717 ----------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                            GR + GVRG+ LA GDQV+S+                      
Sbjct: 658 LDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI--------------------- 696

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                           +   E  +LTV+E G+GKRTS  ++   
Sbjct: 697 --------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPTK 724

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 725 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 782

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 783 TLIRTSEGESVVGLQRIDE 801



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 398 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 455

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 456 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 511

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 512 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 569

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 570 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 627

Query: 588 SVLFFSSLGFVYKEKVWR----------------------LPIGSPQARGKALINILSLN 625
            ++ FS  G V + K                              P  R  A +  + L 
Sbjct: 628 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 687

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 688 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 741

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 742 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 800

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 801 EIEESELPEGEEALVENDAPVAQDDDGEQ 829


>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 824

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/902 (40%), Positives = 551/902 (61%), Gaps = 92/902 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
                + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + K
Sbjct: 7   DKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY +L  MAQ+WS+R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L D+ KDTVDF PN+D + +EP V+ ARYPN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKIAMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV++  V +I+N   + +     +++I++GPDFPTGA ILG  GI++AY TGRG I 
Sbjct: 187 NLSEVINAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIKGIRDAYTTGRGKIK 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R VS IE     + +IVVTE+PY VNKA ++EKIAELV++K++  I DLRDES+R+G R
Sbjct: 247 VRAVSEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGMR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  +A+VILN+LY++T LQ  F VNM+AL   +P+   ++ +L+ ++A +E+VV
Sbjct: 307 VVIELRRDVNANVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYLAHQEDVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKY LNKA++RAH+L GL IA+ N+DE+++IIR S N   A+ EL++R         
Sbjct: 367 TRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+VQ +AI+++RL  LTGL R+ +  E N L  +I+    
Sbjct: 418 -----------------FGLSDVQAQAIVDMRLRALTGLERERLEAEYNELLSKIEYFES 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +LLG+IK+E+L V+ +    RRT  ++   +MEDED I +ED+++ ++ LGY+K
Sbjct: 461 ILADNKKLLGVIKEEILIVEGKYKDDRRTGFIQD-DEMEDEDLIQKEDIIIAMTKLGYIK 519

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    +  Q RGGKG  G+   D+DF+ D+ + +TH  + FF++ G VY  K +++P  
Sbjct: 520 RMSPDNFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEA 579

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG A++N+L L   E+I+ I+P    E+S    Y+   TK G +++ +++ F  I 
Sbjct: 580 SRTARGIAIVNLLQLQPDEKISAIIP---SEASSGEGYLFMVTKKGTIKKCRINLFDNIR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++ V+    ++D+++ +K G C+R     IR    R + GVRG+ L
Sbjct: 637 KNGLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAMG-RGATGVRGMRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+VI M +    +                                            
Sbjct: 696 NEADEVIGMQLASQGE-------------------------------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    ++L VSE G+GKRT   +F++ NR GKGI        ++ G LV    VN+
Sbjct: 712 ---------YLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK--DNDKTGKLVGAKLVNE 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAE 907
           + +I+L++ +G +IR+ V+ I +  RA  GV + +  +  D ++ S+ ++RE +  +  E
Sbjct: 761 DREILLITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASIAKVREEKNTESVE 820

Query: 908 ST 909
            +
Sbjct: 821 ES 822


>gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622]
 gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622]
          Length = 942

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/916 (41%), Positives = 550/916 (60%), Gaps = 84/916 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M  +G   N+ Y K 
Sbjct: 23  ELIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKS 82

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++++YDA+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R
Sbjct: 83  ARVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVR 142

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +++ A  LL D+ K+TVDF PNYD S +EP+VL +++PN+LVNG  GIAVGM TNIP HN
Sbjct: 143 MERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHN 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV+ G + +IDNP   +  LME I GPDFPTGA+I GR GI  AY TGRG + IR  S
Sbjct: 203 MTEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIITGREGIVRAYETGRGQVTIRARS 262

Query: 255 HIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE +  GDRE I+ +EIPYQVNKA ++EKIAELVREK++  I+D+RDESDRQG R+VIE
Sbjct: 263 DIETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVIE 322

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A + V+LN LY  TSL++ F   M+A++G +P    L  +L  F+A R +VV RRT
Sbjct: 323 LKRDAISQVVLNNLYAMTSLETTFGAVMLAIDGGQPRTLNLKEMLDRFIAHRRDVVTRRT 382

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA--------- 424
           +Y L KA  R H++ GL +A   +D VV +IR S +P+ AR  LM     +         
Sbjct: 383 RYELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERFAT 442

Query: 425 ----------SDIKDLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGR 470
                     + ++ L+    +   +       Y     SE Q + ILE+RL RLTGL R
Sbjct: 443 LQRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGFSEGQAQNILEMRLQRLTGLQR 502

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           +++  EL  L  +I    DIL++   LL +IK EL+ +++     RRT I   + +M  E
Sbjct: 503 EELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGDKRRTEITGAVDEMTSE 562

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E MVVT+SH GY+KR PL+ YRAQ+RGG+G++G   +++DFV+ LF+ STH  ++
Sbjct: 563 DLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKLFVASTHAYLM 622

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G +Y  KV ++P  S  +RGKA++N++   +GER+  ++   +      N YV F
Sbjct: 623 PITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGERLAQVLVTRD---FPENRYVFF 679

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            TK G V+R  LS F  +  SG IA+ +D  DE+++V       DILL+T  G  +RFP 
Sbjct: 680 VTKRGVVKRTDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDILLSTASGMSIRFPE 739

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R    R + GV+GI+L  GD+V+   +V                          D  
Sbjct: 740 TEVRSMG-RQAYGVKGITLEDGDEVVGADVVET------------------------DAA 774

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +T  +N        +E R Q               G G      D + + R+GK +   
Sbjct: 775 ILTVTENGYGKRTQEAEYRQQ------------GRGGKG----IIDIKTTERNGKVVGLL 818

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDE 889
            V +                D+++LV++ G LIR+ V EI +  R T+GV + +   + E
Sbjct: 819 QVKEA---------------DEVMLVTNGGMLIRMRVKEISVIGRNTQGVRLIALENEQE 863

Query: 890 RVVSVERIRESEIVDE 905
           +V+++ ++ ES+  +E
Sbjct: 864 KVMAISKLPESDESEE 879



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 15/256 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E L  +           V  V+  G VKR  LS +   R    G   + + D D +  + 
Sbjct: 660 ERLAQVLVTRDFPENRYVFFVTKRGVVKRTDLSAFENVRSS--GIIALGIDDGDELVAVM 717

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      +L  ++ G   +     +     QA G   +  ++L  G+ +        D +
Sbjct: 718 ITDGSKDILLSTASGMSIRFPETEVRSMGRQAYG---VKGITLEDGDEVVGADVVETDAA 774

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
                 ++  T++G  +R + +++ Q  R GK  + + +     +++ +    + ++++L
Sbjct: 775 ------ILTVTENGYGKRTQEAEYRQQGRGGKGIIDIKTTERNGKVVGLLQVKEADEVML 828

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +  I V   RN+ GVR I+L    + +     L    + +E    +   
Sbjct: 829 VTNGGMLIRMRVKEISVIG-RNTQGVRLIALENEQEKVMAISKLPESDESEENGEAVAPA 887

Query: 759 SAQRRLISGDTEEITS 774
                    +  E T 
Sbjct: 888 EGAVPTAEANAPEATD 903


>gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91]
          Length = 866

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/860 (42%), Positives = 528/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L    QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
 gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 859

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/913 (40%), Positives = 534/913 (58%), Gaps = 69/913 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   + +  E   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MADPTGAGNPSE--RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSV
Sbjct: 59  YELGLTAERPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG 
Sbjct: 119 DNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGS 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE++DG +A+I +P I+   LM II GPDFPTG  ILGR GI+ 
Sbjct: 179 AGIAVGMATNIPPHNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQILGRKGIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y  GRGSI +RGV+ IE        DR+ +++TE+PYQ NKA+++E+IAELV +K++  
Sbjct: 239 TYTGGRGSITMRGVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEG 298

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           IAD+RDESDR G R+VIEL+R A   V+LN LY+ T LQ+ FS   +AL   +P    L 
Sbjct: 299 IADIRDESDRDGMRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGEPVVLNLK 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR E + RRTKYLL KA +R H+L GL +A+ +LD ++++IR + +  TAR+
Sbjct: 359 RMLEVFLDFRIETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQ 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                              LSE+Q  AIL+++L RLT L  D IR 
Sbjct: 419 GLVN--------------------------DHGLSEIQADAILQMQLRRLTALEADKIRL 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL  R R+L II++EL  +K+  +TPRRT I++    +ED D I  
Sbjct: 453 EHEDLIAKIADYKDILQRRERVLSIIEEELRQLKERHNTPRRTEILDLEGGLEDIDLIAN 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + +  RG +G++G   + E+ V      + H S+L FS  
Sbjct: 513 ERSVVLLTENGYLKRMPVSEFESTSRGTRGKAGTKSQGEEAVRLFISCNDHDSLLLFSDR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY    +R+PI S  A+G  ++ +L + + E+IT+++     E    ++ +V  T  G
Sbjct: 573 GVVYSLPAYRVPIASRAAKGTPVVQLLPIPREEQITSLLAVSAFEE---DVQLVMLTTGG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R  LS F  I  +G IA+ L+  D +  V      + +L+ +  G  + F I+   +
Sbjct: 630 FIKRTPLSAFSNIRANGLIAINLEDADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDL 689

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVR ++L  GD ++SM ++    AD          ++A      G++EE  S
Sbjct: 690 RPLGRTARGVRAMALRDGDSLVSMDVLPAELAD---------RIAAAGEASDGESEEAAS 740

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G GKR     FR+  R+G G+R      
Sbjct: 741 SDG--------------------PWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKF-- 778

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  ALV +  +   ++++LVS++G ++R+  + I   SRA  GV +    K +R+  V
Sbjct: 779 RRDGDALVGLCVMGAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEV 838

Query: 895 ERI-RESEIVDEA 906
             +  E+E  DE+
Sbjct: 839 VLVPPEAETDDES 851


>gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344]
 gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229]
 gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247]
 gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
 gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344]
 gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229]
 gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247]
 gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
          Length = 866

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/860 (42%), Positives = 528/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L    QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243]
 gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b]
 gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668]
 gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a]
 gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98]
 gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14]
 gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9]
 gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210]
 gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894]
 gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177]
 gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112]
 gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215]
 gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
 gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243]
 gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b]
 gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668]
 gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a]
 gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
          Length = 866

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/860 (42%), Positives = 528/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L    QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
 gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
          Length = 854

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 540/902 (59%), Gaps = 86/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y
Sbjct: 8   DHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYT
Sbjct: 68  KKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DD+ KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATNIP
Sbjct: 128 ECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DGC A IDNP I  + LM+ I  PDFPTGA I G  G+KNAY TGRG +V+R
Sbjct: 188 THNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIYGLQGVKNAYETGRGRVVMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +    ++IVVTEIPY VNKA ++E IA+LV+E ++  I+++ DE+ RQG R+V
Sbjct: 248 AKAEIE-SGETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQGMRIV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +++KR A+A++ILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R +V +R
Sbjct: 307 VDVKRDANANIILNKLFKMTALQSSFSVNCIALVNGRPRLLNLQECIKYFVEHRHDVTIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R           
Sbjct: 367 RTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RLA+LTGL  D +  E   L   IK   +IL
Sbjct: 416 ---------------FNLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +  R   ++K EL  +K++    RRT I+    +   ED    + +V+T+SHLGY+KR 
Sbjct: 461 DNPERCKEVMKNELYDIKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRT 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G  
Sbjct: 521 PLTDFKEQARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDK 580

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+LSL  G+ +   +     ++E   +  YVVF TK G V++  L  + +  
Sbjct: 581 SSKGRAIQNMLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAYSRPR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ ++  DE++ V      +++++  K G+  RF  + +R    R S GVRG+ L
Sbjct: 641 NNGVIAININDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTMG-RVSTGVRGMKL 699

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+VI M +V   D++ +  +   +    +R L                       
Sbjct: 700 DEDGEDEVIGMVVV--NDSENETVMVVSEEGYGKRSL----------------------- 734

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                       D+R++NR GKG++  ++++  + G LVA+  V
Sbjct: 735 --------------------------VSDYRLTNRGGKGVKTLNITE--KTGKLVAIKTV 766

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIVDEA 906
            D++ +++++  G +IR+ V+E R+  RAT+GV + + +K  + + SV ++R +E+ ++ 
Sbjct: 767 TDDNDLMIINKSGIVIRMAVSECRVMGRATQGVRLINLSKKSDTIASVCKVRSAEMEEKV 826

Query: 907 ES 908
           + 
Sbjct: 827 DE 828


>gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301]
          Length = 822

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 548/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
 gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
          Length = 848

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/914 (39%), Positives = 546/914 (59%), Gaps = 90/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM
Sbjct: 1   MDEN----QTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSV
Sbjct: 57  RGIGNFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+DGC A IDNPDI  D LME I  PDFPTGA I G  G+K+A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIYGLQGVKDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +V+R  + IE +    ++IVVTEIPY VNK  ++E IA+LV+E +I  I+++ 
Sbjct: 237 YETGRGRVVMRAKAEIE-SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+ RQG R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL G +P   +L   +K 
Sbjct: 296 DETGRQGMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +V +RR ++ L KA++RAH+L  L  A  N+DEVV +IR S  P  A++ L +R
Sbjct: 356 FVEHRHDVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                         E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FGFDELQSKAIVDMRLSQLTGLRLDQLHQEFEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL +  R   ++K EL  VK++    RRT I+    +   ED    + +V+
Sbjct: 450 MQTIKDLQEILDNPERCKEVMKAELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR PL+ ++ Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TISHLGYIKRTPLADFKEQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G   ++G+A+ N+LSL+ G+ +   +     ++E   ++ +VVFATK G V+
Sbjct: 570 MKCYDIPEGDKNSKGRAIQNMLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ ++  DE++ V     +N++++  + G+  RF  S IR    
Sbjct: 630 KTSLRAYSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSMG- 688

Query: 719 RNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R S GVRG+ L +   D+V+ M +V     +                             
Sbjct: 689 RVSTGVRGMRLDEDGQDEVVGMIVVNDPVNE----------------------------- 719

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   +SEE                    GKR+   D+R++NR GKG++  +++  +
Sbjct: 720 ----TVMVVSEEGY------------------GKRSQVADYRLTNRGGKGVKTLNIT--D 755

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
           + G LVA+  V D + +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV 
Sbjct: 756 KTGRLVAIKNVTDANDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVC 815

Query: 896 RIRESEIVDEAEST 909
           ++  SE+  + E  
Sbjct: 816 KVMSSEMESQVEEE 829



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 108/249 (43%), Gaps = 20/249 (8%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D +  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + +    
Sbjct: 609 DNEEFLDSHFVVFATKQGIVKKTSLRAYSRPR--TNGVIAININEGDEVVDVRLTNGKNE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNL 646
           ++     G   +    ++      + G   +  + L++   + +  ++   +      N 
Sbjct: 667 LIMADRNGRACRFDESKIRSMGRVSTG---VRGMRLDEDGQDEVVGMIVVND----PVNE 719

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLG 703
            V+  ++ G  +R++++D+   NR GK    L+  D+   +++++  T  ND+++  K G
Sbjct: 720 TVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNITDKTGRLVAIKNVTDANDLMIINKSG 779

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHM 758
             +R  ++  RV   R + GVR I+LAK + VI+     M+  + +  + + R  + K+ 
Sbjct: 780 IVIRMSVAECRVMG-RATQGVRLINLAKKNDVIASVCKVMSSEMESQVEEESREQWAKNS 838

Query: 759 SAQRRLISG 767
              +   + 
Sbjct: 839 EDIKNDTAS 847


>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 814

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/892 (42%), Positives = 523/892 (58%), Gaps = 88/892 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I SV I ++M+ +YL YA++VI+ RA+PD RDGLKPVHRRIL+ M  MG+  N  Y K A
Sbjct: 6   IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ARMAQD+S+R  LI+GQGNFGS+DGD PAA RYTE RL
Sbjct: 66  RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  N+DG+ +EPVVL AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV      +I+N     DI  + LM II GPDFPTG +I+GR GI + Y+TGR  + +R
Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIVGREGILHGYSTGRSRLTVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV+ IE+  G R  I++TEIPYQVNKA ++E+IAELVRE ++ +I+DLRDESDR G  +V
Sbjct: 246 GVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RGA    +LNQLY+YT LQS FSVNM+AL   +P    L   L+ F+  R+EV+ R
Sbjct: 306 IELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNEPRLLPLKRALQVFIQHRQEVLTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KAR RAH+L GL IA+ANLD V+ IIR SP+ ETAR+ L++R           
Sbjct: 366 RTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIER----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ +AIL+++L RL  L R  I +E   +   I    D+L
Sbjct: 415 ---------------FKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++  ++L +I+ ++  + ++    RRTRI  E   D  +ED +  E +++T++  GY+KR
Sbjct: 460 ANPRKILALIQTDMKELAEKYGDNRRTRIAAEAKEDFSEEDLVADEAVLITLTARGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V  S YR Q RGGKG  G  +++ED +T +    T  ++LFF+  G VY +K  ++P   
Sbjct: 520 VNASAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAG 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              +G   IN+L+L   ERIT  +      S  +  Y + AT +G V+R  LS+F  +  
Sbjct: 580 RTDKGIPAINVLALEANERITVAVAVR---SFADARYCLMATVNGKVKRVDLSEFESVRP 636

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L++ D++  V        +LL T+ G  VRF  S +R    R + GV GISL 
Sbjct: 637 SGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESEVRSMG-RQASGVTGISLR 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V SM IV                                                 
Sbjct: 696 EGDRVASMDIVEEGGG-------------------------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V+ KGFGKR    +F +  R+  G+ A D   I + G L     V +N
Sbjct: 712 ---------LLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVVQEN 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D++ L S  G  +RV V+ I    R  +GV I    + + V S+ RI + E 
Sbjct: 763 DEVALFSASGVALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIARIPQEEA 814


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/851 (43%), Positives = 531/851 (62%), Gaps = 18/851 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + +  V+I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  L++GQGNFGS+DGDPPAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL  R PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+  C+A+ID+P +D+  +M  I GPDFPT  ++ G  GI+ AY TGRG I 
Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSRGIQEAYLTGRGRIF 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H+E   +  R+ I+VTE+PY VNKA +LEKI ELV+EK+I  I  LRDESD++G 
Sbjct: 242 LRARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL+R    +V+LN LY +T LQ++F +NMVAL   +P+   L   L+AF+  R+EV
Sbjct: 302 RMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQPQVLNLKLALEAFLRHRQEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAHVL GLAIA+ N+D V+ +I+ S +P  AR  L+ RSW    + 
Sbjct: 362 VTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVVI 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D++      S             +G   LS  Q +AIL++RL RLTGL +  I +E   +
Sbjct: 422 DMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+IL++  RL+ +I++EL+ ++ +    RRT I    +D+  ED I  E++VV
Sbjct: 482 IELISELLEILANPERLMAVIREELVEMRQQYGELRRTEIQYNHVDLRLEDLIQEENVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY 
Sbjct: 542 TLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KV+ LP G+  ARGK ++N+L L +GERI T++P  E E      YV   T  G V++ 
Sbjct: 602 KKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEE---GKYVFMVTASGVVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F +   SG IA++L   D+++  +    E +I+L +  G+ +RF    +R    R 
Sbjct: 659 SLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKVRPMG-RT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+ L    +VI++ I  +        + Y K  +     + G   +       + 
Sbjct: 718 ARGVKGMELPPEHRVIALIIARNGTILTATELGYGKRTAIAEYRLQGRGGQGIISIQTTP 777

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G +      E   +E  I+ ++ +G   RT   D  +  R+ +G++  ++ +   +  
Sbjct: 778 RNGQVVGAVQVE---EEDEIVLITNRGTLIRTPVCDISLMGRNTQGVKLINLLEGERLVG 834

Query: 841 LVAVFPVNDND 851
           +     V D +
Sbjct: 835 V--ERIVEDGE 843



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 101/321 (31%), Gaps = 59/321 (18%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCT 691
           +    ++       VV  +  G  +   L  +    R   GK A  +   D I  +    
Sbjct: 526 VDLRLEDLIQEENVVVTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIAN 585

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             + +L  +  G+     +  +     R + G   ++L   ++   +  VL      + +
Sbjct: 586 THDTLLCFSSRGKVYWKKVYEL-PQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGK 644

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGK 810
             +M   S   +  S             ++E    ++    +L   EQ I+  S  G   
Sbjct: 645 YVFMVTASGVVKKTSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVI 704

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R S    R   R+ +G++  ++   + + AL+       N  I+  ++ G   R  + E 
Sbjct: 705 RFSEQKVRPMGRTARGVKGMELPPEHRVIALIIAR----NGTILTATELGYGKRTAIAEY 760

Query: 871 RIAS---------------------------------------------------RATKG 879
           R+                                                     R T+G
Sbjct: 761 RLQGRGGQGIISIQTTPRNGQVVGAVQVEEEDEIVLITNRGTLIRTPVCDISLMGRNTQG 820

Query: 880 VVIFSTAKDERVVSVERIRES 900
           V + +  + ER+V VERI E 
Sbjct: 821 VKLINLLEGERLVGVERIVED 841


>gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160]
 gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160]
          Length = 860

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/853 (42%), Positives = 527/853 (61%), Gaps = 37/853 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+     R
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + +I+ +P P  A++ELM R+W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERISAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L  G  VI++ +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGK 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +   Q        I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVDPEAQ--------IMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAVFPVNDNDQ 852
            L  V       +
Sbjct: 829 GLQQVAEAEGESE 841


>gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
 gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
          Length = 864

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/913 (40%), Positives = 542/913 (59%), Gaps = 89/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+       ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM
Sbjct: 1   MDEN----QTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G   +K Y KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSV
Sbjct: 57  LGIGNTNDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTECRL K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG 
Sbjct: 117 DGDSAAAMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+DGC A IDNP ID D LME I+ PDFPTGA I G  G+++A
Sbjct: 177 GIAVGMATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIYGLQGVRDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IVIR  + IE    + ++IV+TEIPY VNK  ++E IA+LV+E ++  I++  
Sbjct: 237 YETGRGRIVIRAKAEIE-VGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNAN 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES RQG R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P    L   +K 
Sbjct: 296 DESGRQGMRIVIDVKREANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLALKDCVKY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EV +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A++ L  R
Sbjct: 356 FVEHRHEVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RL++LTGL  D +  E   L
Sbjct: 416 --------------------------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL        ++K EL  VK++    RRT+I+    +   ED    + +V+
Sbjct: 450 ERLIAHLQQILEDPELCKKVMKDELNEVKEKYGDDRRTKIIPAEHEFNAEDFYPNDPVVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KR PLS +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y 
Sbjct: 510 TVSHLGYIKRTPLSEFREQARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            K + +P G+  A+G+A+ N+L++   + +  I+     +DE   N+ YVVFATK+G V+
Sbjct: 570 LKCYNIPEGAKDAKGRAIQNLLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVK 629

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G IA+ + + DE++ V      N++++  + G+ VRF    IR    
Sbjct: 630 KTSLEAYSRPRTNGVIAINIANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTMG- 688

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGI L KG DQV+ M +V   D+  +  +   ++   +R  +            
Sbjct: 689 RTATGVRGIRLDKGDDQVVGMIVV--NDSVQETVMVVSENGYGKRSGV------------ 734

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                                 D+R +NR GKG++  +++  ++
Sbjct: 735 -------------------------------------EDYRKTNRGGKGVKTMNIT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVER 896
            G LVA+  V D++ +++++  G  IR+ V + R+  RAT+GV + +   K++ + SV +
Sbjct: 756 TGRLVAIKNVTDDNDLMIINKSGITIRLAVADCRVMGRATQGVRLINLSKKNDVIASVCK 815

Query: 897 IRESEIVDEAEST 909
              SE+    E  
Sbjct: 816 TMSSELEATVEEE 828



 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 111/258 (43%), Gaps = 17/258 (6%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D++  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + + H  
Sbjct: 609 DDEEFINSHYVVFATKNGTVKKTSLEAYSRPR--TNGVIAINIANGDEVVDVRLTNGHNE 666

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     +      A G  +  I      +++  ++   +         V
Sbjct: 667 LIMANRNGRAVRFDEKTIRTMGRTATG--VRGIRLDKGDDQVVGMIVVNDSVQE----TV 720

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  +++G  +R+ + D+ + NR GK    ++  D+   +++++  T +ND+++  K G  
Sbjct: 721 MVVSENGYGKRSGVEDYRKTNRGGKGVKTMNITDKTGRLVAIKNVTDDNDLMIINKSGIT 780

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHMSA 760
           +R  ++  RV   R + GVR I+L+K + VI+     M+  L A  + + R  + +    
Sbjct: 781 IRLAVADCRVMG-RATQGVRLINLSKKNDVIASVCKTMSSELEATVEEESRSQWAQKNEN 839

Query: 761 QRRLISGDTEEITSLKND 778
                S + ++  +   D
Sbjct: 840 APLNNSEEGDKTVTSPLD 857


>gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 876

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/912 (38%), Positives = 517/912 (56%), Gaps = 100/912 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD   + L+E     I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMN---------- 450

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + EVQ  AIL ++L RL  L R  I +E   L I+I +  D
Sbjct: 451 ----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFAPGETIQAVLSIPNYDVA---KYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQT 731

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD+++ M +V    +                                   
Sbjct: 732 AGVQGMRFREGDELLDMDVVAAETS----------------------------------- 756

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 757 ----------------KDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGSL 798

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E++
Sbjct: 799 VGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858

Query: 902 IV----DEAEST 909
                 +E E+T
Sbjct: 859 DEENQLEEKEAT 870


>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
 gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
          Length = 811

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/896 (41%), Positives = 553/896 (61%), Gaps = 86/896 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E +++  TSV+I +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q+G+  N
Sbjct: 2   PELKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI GEV+GKYHPHG+ A+YD + RMAQ++S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KSHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  LL D+ KDTVDF+PN+D + +EP VL +R PN+L+NG  GIAVGM+T
Sbjct: 122 RYTEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMST 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+DG +A+IDNPD+D+  LM+II+GPDFPTG +I+GR GIK A+ TG+G +
Sbjct: 182 NIPPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIMGRKGIKKAFETGKGKV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE+   +RE+I+V E+PYQVNKA ++EK A LVR+  +  IADLRDESDR G 
Sbjct: 242 KVRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L++ A+  ++LN+L+++T LQ  F + M+AL   +PE  +L  +L+ ++  ++EV
Sbjct: 302 RISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVDGEPEVLSLKEVLQHYLEHQKEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY L+KA+ R H+L GL  A  N+D VV+ IR S +   A+  L+          
Sbjct: 362 VTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLIS--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q +AIL +RL RLTGL  + I +E   L  EI+   
Sbjct: 413 -----------------DFDLTKKQAKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S  +LL IIK E+L +K++    RRT+IV+  +D+  ED I  E++++T++   Y+
Sbjct: 456 SILASEEKLLDIIKDEILVLKEKYKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  YR+Q RGG+G  G+    +D V  L+  STH  +LFF++ G  Y+ K +++P 
Sbjct: 516 KRIPLDTYRSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPD 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G A+IN+L +   ER+T ++P    E    + Y++  T+ G V+R +L +F   
Sbjct: 576 ASRQAKGTAIINLLDMEPNERVTAVIPV---EDFDLDDYLLMVTEQGIVKRTELQEF-NT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +G IA+ L   DE++ V   T + DI+L T+LG  +RF  S +R    R + GV+GI 
Sbjct: 632 NYTGLIALDLQQNDELIEVRLTTGQEDIILGTELGLAIRFNESEVRSMG-RTARGVKGID 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA  D+V+   I+                                               
Sbjct: 691 LASQDKVVGADIIKDGGK------------------------------------------ 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V++KG+GK+T    +R  +R+GKG+      + ++ G L A+  V 
Sbjct: 709 -----------LLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIK--RTDKNGKLTALKVVE 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++D+++L+S +G +IR+ V+EI   SR T+GV + S  + +RVVS+  I + +  +
Sbjct: 756 EDDEVMLISKEGIVIRMSVSEISSTSRNTQGVNLMSLVEGDRVVSLAHIEDEDGNE 811


>gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 876

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/912 (38%), Positives = 517/912 (56%), Gaps = 100/912 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD   + L+E     I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MCEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMN---------- 450

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + EVQ  AIL ++L RL  L R  I +E   L I+I +  D
Sbjct: 451 ----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDVA---KYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQT 731

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD+++ M +V    +                                   
Sbjct: 732 AGVQGMRFREGDELLDMDVVAAETS----------------------------------- 756

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 757 ----------------KDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGSL 798

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E++
Sbjct: 799 VGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858

Query: 902 IV----DEAEST 909
                 +E E+T
Sbjct: 859 DEENQLEEKEAT 870


>gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH]
          Length = 866

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/860 (42%), Positives = 531/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLIDD-----------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L  G QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------AEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
 gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
          Length = 848

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/906 (39%), Positives = 552/906 (60%), Gaps = 89/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D CVA IDN +ID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 AKAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  +++ F+  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIRYFIEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELVEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YVVF TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   D +                                        
Sbjct: 695 DEDGQDEVVGMICIKDPDTE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE- 905
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++  SE  DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVT-SENEDEI 820

Query: 906 -AESTE 910
             E  E
Sbjct: 821 LEEGNE 826



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 113/253 (44%), Gaps = 15/253 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +    VV  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++
Sbjct: 606 QEFINSHYVVFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDRVIEVRMTNGDNEII 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYV 648
             +  G   +     + +    A G   +  ++L++   + +  ++   +     +   +
Sbjct: 664 IANRNGRAIRFHESAVRVMGRTATG---VRGMTLDEDGQDEVVGMICIKD----PDTETI 716

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  ++ G  +R+ + D+ + NR GK    ++  D+   ++++++ T END+++  K G  
Sbjct: 717 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGIT 776

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  ++ +R+   R + GVR I+L K +  I     + ++ + +      + +    +  
Sbjct: 777 IRLKVADVRIMG-RATQGVRLINLEKRNDEIGSVCKVTSENEDEILEEGNEIIPENSQNT 835

Query: 766 SGDTEEITSLKND 778
               +EI ++  +
Sbjct: 836 KDSQDEINNVNEE 848


>gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 881

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/907 (38%), Positives = 507/907 (55%), Gaps = 92/907 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++GM   G   ++
Sbjct: 26  DNPHGNIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDR 85

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCARI G+VMG++HPHG++AIYDAL R+ Q W++R  L  GQGNFGS   D  AA R
Sbjct: 86  AFNKCARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPR 145

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 146 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATN 205

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV  G    + NP+   +     LME I+GPDFPTGA ILG  GI++AY TGR
Sbjct: 206 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGR 265

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD- 304
           GSI +R V ++E+    R  +VVTE+PYQ N   +  KIA+L++E ++  I+DLRDE+  
Sbjct: 266 GSITMRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSG 324

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VI LKR A   V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  
Sbjct: 325 RTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNH 384

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM      
Sbjct: 385 QMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMD----- 439

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + E Q +AIL ++L RL  L R  I++  + L   I
Sbjct: 440 ---------------------FLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLI 478

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVS 543
            E   I++S  R   II +EL  + +     RRT I+ G   DM  ED I  E++VVT++
Sbjct: 479 AEYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTIT 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K 
Sbjct: 539 RGGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKG 598

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + L      A+G+ L N+L     E I  +M     E +    Y+V ATK G V++++LS
Sbjct: 599 YELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAE---YLVLATKGGLVKKSRLS 655

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSV 722
           D+     +G IA+ L   DE++S    + E+DILL ++ G  +RF  +   +   GR++ 
Sbjct: 656 DYDTNRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPMGRSTS 715

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+    GD++IS  +V+                                        
Sbjct: 716 GVTGMKFRDGDELISAQVVIP--------------------------------------- 736

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         E F+  V+E G+ KRT    +R+  R+G GI+   + +    GALV
Sbjct: 737 --------------ESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEG--RGALV 780

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V++ND++++V   G ++R  V+E+    R T GV+     K + ++ + R ++ ++
Sbjct: 781 GGLIVSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQL 840

Query: 903 VDEAEST 909
            ++ E  
Sbjct: 841 DEQKEDD 847


>gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
 gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
          Length = 848

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/859 (42%), Positives = 539/859 (62%), Gaps = 30/859 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C+ ++ +PDID+  LM  I  PDFPT  +I G +GIK+ Y TGRG ++
Sbjct: 182 IPPHNISEVIDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   G+R  I++ E+PYQVNKA +L +I ELVR+KRI  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T +Q  F +NMVAL   +P    L  +L  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDYFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM R+W +S ++
Sbjct: 362 ITRRTVFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVE 421

Query: 429 DLIDLIDDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++      +              S+    LS+ Q +AIL+LRL RLTGL ++ I +E  
Sbjct: 422 EMLRRAMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYK 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I++ L++L++  R+  II +EL ++K +   PRR+ +V    D+  ED I   DM
Sbjct: 482 EILDKIRDLLNMLANSERITAIIIEELTAIKGQFGDPRRSEVVIDAQDLSTEDLITPTDM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  Y+AQ+RGG+G+  +  R++DF+ +LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P GS  +RG+ + N++ L Q E+I  ++P    +S  +  YV  AT  G V+
Sbjct: 602 YWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPV---KSFDDTRYVFMATAGGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ V     ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717

Query: 719 RNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEE 771
           RN+ GVRG+ L    +VIS+ +       VL A  +   +   +   +   R   G    
Sbjct: 718 RNARGVRGMKLGAEQKVISLLVADSENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAI 777

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T+ +N   V   + E            I+ ++  G   RT   + R   R+ +G+   +
Sbjct: 778 NTNKRNGKVVAAQLVE--------PNDEIMLITTGGVMIRTRVSEIREMGRATQGVILIN 829

Query: 832 VSKINEIGALVAVFPVNDN 850
           +    ++  L  +   ++N
Sbjct: 830 LDAGEKLAGLERIVETDEN 848



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/576 (14%), Positives = 193/576 (33%), Gaps = 54/576 (9%)

Query: 366 EEVVVRRTKYL-LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             ++  RT +  L+K    + ++  L   V   + +VRI     +        ++   + 
Sbjct: 239 RVIMRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDK 298

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQ-------------------TRAILELRLARL 465
           S ++ +I+L       +  +     +++Q                    + +L+  L   
Sbjct: 299 SGMRVVIELKRGEVPEVILNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDYFLRHR 358

Query: 466 TGLGRDDIRNELNSLGIEIKECLDI---LSSRSRLLGIIKQELLSVKDELD-TPR--RTR 519
             +       EL            +   LS+   ++ +IK      + +     R  R+ 
Sbjct: 359 REVITRRTVFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSS 418

Query: 520 IVEGLLDMEDEDCIVREDMVVT----VSHLGY----VKRVPLSVYRAQRRGGKGRSGVVM 571
           +VE +L     D        +     +S+  Y     +   +   R QR  G      ++
Sbjct: 419 LVEEMLRRAMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGL-EQEKIV 477

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
            +   + D         +   ++   +    +  L     Q  G          + E + 
Sbjct: 478 SEYKEILDKI----RDLLNMLANSERITAIIIEELTAIKGQ-FGDP-------RRSEVVI 525

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVET 689
                  ++       VV  +  G ++   L D+    R   GK A+     D I ++  
Sbjct: 526 DAQDLSTEDLITPTDMVVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFI 585

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               + IL  + LG+     +  +     R S G    +L   +Q   +  VL   +  D
Sbjct: 586 ANTHDFILCFSSLGRVYWIKVYNV-PQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFDD 644

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGF 808
            R  +M       +                +V  +  +      L   +  ++  S+ G 
Sbjct: 645 TRYVFMATAGGTVKKTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGK 704

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
             R    D R + R+ +G+R   +    ++ +L+     ++N  ++  ++ G   R  + 
Sbjct: 705 AMRFDENDVRPTGRNARGVRGMKLGAEQKVISLLVAD--SENMTVLTATENGYGKRTSIT 762

Query: 869 EIRIASRATKGVVIFSTAK-DERVVSVERIRESEIV 903
           E    +R T+G++  +T K + +VV+ + +  ++ +
Sbjct: 763 EYTRHNRGTQGMIAINTNKRNGKVVAAQLVEPNDEI 798


>gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
 gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
          Length = 828

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/898 (40%), Positives = 532/898 (59%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  +SI DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K Y
Sbjct: 2   QRDKILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG+ A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TV F  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVV+G +A+I+NP+I +D +ME I  PDFPT  +I G  G+K AY TGRG +VIR
Sbjct: 182 PQNLSEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIYGYEGVKQAYHTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI EL+  K+I  IAD+RDESDR G R+
Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V ++AL    P+   L  +++A++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLNLKEMMEAYLKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L  A  +AH+L GL I + NLDEV+  IR SPN   A+ +LM++          
Sbjct: 362 RRTTYELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q++A+LE+RL RLTG+ RD I  + N     I+E   I
Sbjct: 412 ----------------FGLTELQSKAVLEMRLQRLTGMERDKIEKDYNETLALIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  + + IIK ELL VK      RRT I     +   ED I +ED+V+T++H  ++KR
Sbjct: 456 LANPEKRMQIIKDELLKVKQVYGDERRTEIRPQEGEFSIEDMIAQEDVVITITHETFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   R EDFV  +F+ STH  +LFF++ G  +  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQARHEDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I   +     ++  + L+++ AT  G++++ ++  F +  R
Sbjct: 576 RAARGRSLANIMELQPGEKIKAYINV---KTFDDPLFIIMATAKGSIKKTEIEAFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       E+DI+L    G  VRF    +R    R ++GV+GISL 
Sbjct: 633 NGIAAITIEDGDELIDARLTDGEHDIILAKNTGYAVRFAEKDVRPMG-RTAMGVKGISLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G+  ISM      D                                             
Sbjct: 692 EGETCISMVTSKRPDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  KG+      +  ++G LV +  VND+
Sbjct: 709 ---------LLAVTDNGFGKRSKVEDYRLTRRGAKGVITLKAHE--KVGHLVGLLDVNDS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I+++  G + R  V+ IR+  R T GV I    + + + +  R+ +S   +E E+
Sbjct: 758 DDLIIITSNGIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTISATARVPKSVDEEENEA 815


>gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  N
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
 gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
          Length = 866

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/860 (42%), Positives = 528/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLMRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L    QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264]
          Length = 866

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/855 (42%), Positives = 524/855 (61%), Gaps = 27/855 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLIDD-----------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDT 769
            +R    R + GVRG+ L  G QVI+M +    +          Y K          G  
Sbjct: 719 DVRPMG-REARGVRGMQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRG 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +       S   G +       L   E  I+ ++  G   RT   + R   R+ +G+  
Sbjct: 778 TKGMIAIQTSERNGRV---VAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTL 834

Query: 830 TDVSKINEIGALVAV 844
             + +  ++  L  +
Sbjct: 835 ISLDEGTKLSGLQQI 849


>gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001]
 gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001]
          Length = 862

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/854 (42%), Positives = 526/854 (61%), Gaps = 37/854 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+     R
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L  G  VI++ +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLEDGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGK 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +   Q        I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVDPEAQ--------IMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAVFPVNDNDQI 853
            L  V        +
Sbjct: 829 GLQQVAEAEAEGDV 842


>gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147]
          Length = 866

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/860 (42%), Positives = 533/860 (61%), Gaps = 37/860 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRL 764
            +R    R + GVRG+ L +G QVI+M +       VL A  +   +   +   +   R 
Sbjct: 719 DVRPMG-REARGVRGMQLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRG 777

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             G     TS +N   V   + +         E  I+ ++  G   RT   + R   R+ 
Sbjct: 778 TKGMIAIQTSERNGRVVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRAT 829

Query: 825 KGIRATDVSKINEIGALVAV 844
           +G+    + +  ++  L  +
Sbjct: 830 QGVTLISLDEGTKLSGLQQI 849


>gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
 gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
          Length = 856

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/899 (39%), Positives = 549/899 (61%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DI+++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++IV+TEIPY VNKA +++ IA+L  +K+I  I++  DESDR+G R+V
Sbjct: 243 ARAEIE-TSSTHDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ FSVN VAL   +P    L  ++K FV  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLKDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +   I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +I  EL+ VK +    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 SNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV   R + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMG-RTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A+                                        
Sbjct: 695 DEDGQDEVVGMICIKDPEAE---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 715 -----------TIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
            D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++    + DE
Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSESMEDE 820



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 114/254 (44%), Gaps = 15/254 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++
Sbjct: 606 TDFINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDRVIEVRMTNGDNEII 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYV 648
             +  G   +     + +    A G   +  ++L++   + +  ++   + E+      +
Sbjct: 664 IANRNGRAIRFHESAVRVMGRTATG---VRGMTLDEDGQDEVVGMICIKDPEAE----TI 716

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  ++ G  +R+ + D+ + NR GK    ++  D+   ++++++ T +ND+++  K G  
Sbjct: 717 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGIT 776

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  ++ +R+   R + GVR I+L K +  I     + +++  DE     ++      + 
Sbjct: 777 IRLKVADVRIMG-RATQGVRLINLEKRNDEIGSVCKVTSESMEDEIPVDDENSPIPPTIN 835

Query: 766 SGDTEEITSLKNDS 779
             + EE     ++ 
Sbjct: 836 EVEGEEKDYNSDNG 849


>gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 870

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/844 (45%), Positives = 534/844 (63%), Gaps = 18/844 (2%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK 
Sbjct: 3   EFAKEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YDA+ RMAQ +S+R +L +GQGNFGS+DGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL D+ K+TVDF  NYDGS  EP VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++ CVA+ID+P+I ++ LME + GPDFPT  +I G  G++ AY TGRG ++I
Sbjct: 183 PPHNLREVINACVALIDDPEISIEGLMEHVPGPDFPTAGIINGVEGVREAYRTGRGRVLI 242

Query: 251 RGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E   G  RE IVVTE+PYQVNKA + EKIAELV+EKRI  I++LRDESD+ G R
Sbjct: 243 RARSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG  A+V+LN LY +T +Q++F +N+VAL   +P+   L  +L++F+  R EVV
Sbjct: 303 LVIELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVDGQPKVLDLRQVLESFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR +PNP  A+  L+ RSW    + D
Sbjct: 363 TRRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSD 422

Query: 430 LIDLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++D    S+         Y +G DG   LSE Q +AIL+LRL RLTGL +D I +E   L
Sbjct: 423 MLDRAGASASRPEDLAADYGVGDDG-YRLSEAQAQAILDLRLHRLTGLEQDKILDEYREL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++ LDIL S  RL   I+ ELL+V ++    RR+ I E   ++  ED I  ED+VV
Sbjct: 482 LDLIEDLLDILGSGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  P++ YRAQRRGG+G++    ++EDFV  L + +TH +VL FSS G VY 
Sbjct: 542 TLSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP GS  +RGK ++N+L L   ERI  I+P  E +    + YV   T  G V++ 
Sbjct: 602 LKVYELPQGSRASRGKPIVNLLPLEADERINAILPVREYD---PDHYVFMVTARGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+DF +   +G IA+ L   D ++ V     + D++L T  G+ VRF  + +R    R 
Sbjct: 659 PLTDFSRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPMG-RT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ +    +VI++  V    A       Y K        +     +         
Sbjct: 718 ACGVRGVRMESDHRVIALLNVAEGAALLATENGYGKRTRFDEFPVHRRGGQGVIGIQTEG 777

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G +         L++   + ++  G   RT      +  R+ +G+R   + +   +  
Sbjct: 778 RNGPL---VGAARVLEDDEAMLITTGGTLVRTPVDQIPLIGRNTQGVRLIRLDEGERLVE 834

Query: 841 LVAV 844
           L  V
Sbjct: 835 LARV 838



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 103/255 (40%), Gaps = 16/255 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V  V+  G VK+ PL+ +   RR   G   V +RD+D++ D+ 
Sbjct: 629 ERINAILPVREYDPDHYVFMVTARGTVKKTPLTDF--SRRRSTGIIAVDLRDDDYLVDVS 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+  ++ G   +     +      A G   +  + +    R+  ++   E  +
Sbjct: 687 LTDGQMDVMLVTTAGKAVRFSENDVRPMGRTACG---VRGVRMESDHRVIALLNVAEGAA 743

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                  + AT++G  +R +  +F    R G+  + + +      ++      ++++ +L
Sbjct: 744 -------LLATENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRNGPLVGAARVLEDDEAML 796

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR P+       GRN+ GVR I L +G++++ +A V     + ++        
Sbjct: 797 ITTGGTLVRTPV-DQIPLIGRNTQGVRLIRLDEGERLVELARVEKLQGEDEDLDDDSDSE 855

Query: 759 SAQRRLISGDTEEIT 773
             +    + D  +  
Sbjct: 856 DDESTQNTMDNGDPE 870


>gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 879

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/907 (38%), Positives = 505/907 (55%), Gaps = 92/907 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++
Sbjct: 24  DDPHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA R
Sbjct: 84  AFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATN
Sbjct: 144 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV  G    + NP+   +     LME I+GPDFPTGA ILG  GI++AY TGR
Sbjct: 204 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGR 263

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD- 304
           GSI +R V ++E+    R  +VVTE+PYQ N   +  KIA+L++E ++  I+DLRDE+  
Sbjct: 264 GSITMRAVVNVEEIH-GRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSG 322

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VI LKR A   V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  
Sbjct: 323 RTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNH 382

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM      
Sbjct: 383 QMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMD----- 437

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + E Q +AIL ++L RL  L R  I++  + L   I
Sbjct: 438 ---------------------FLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLI 476

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVS 543
            E   I++S  R   II +EL  + +     RRT I+ G   DM  ED I  E++VVT++
Sbjct: 477 SEYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTIT 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K 
Sbjct: 537 RGGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKG 596

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + L      A+G+ L N+L     E I  +M     E +    Y+V ATK G V++++LS
Sbjct: 597 YELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAE---YLVLATKGGLVKKSRLS 653

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSV 722
           D+     +G IA+ L   DE++S    + E+DILL ++ G  +RF  +   +   GR++ 
Sbjct: 654 DYDTNRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPMGRSTS 713

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+    GD++IS  +V+                                        
Sbjct: 714 GVTGMKFRDGDELISAQVVIP--------------------------------------- 734

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         E F+  V+E G+ KRT    +R+  R+G GI+   + +    GALV
Sbjct: 735 --------------ESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEG--RGALV 778

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V++ND++++V   G ++R  V+E+    R T GV+     K + ++ + R ++ ++
Sbjct: 779 GGLIVSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQL 838

Query: 903 VDEAEST 909
            ++ E  
Sbjct: 839 DEQKEDD 845


>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
 gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 846

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/896 (40%), Positives = 531/896 (59%), Gaps = 76/896 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S  +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 4   RIISTDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGS+D DPPAA RYTECR
Sbjct: 64  ARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECR 123

Query: 135 LQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       LL D+  +TVDF  NYDGS QEP+VL AR P +L+NG  GIAVGMATNIP H
Sbjct: 124 LTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+I NP++    LM+ I  PDFPTG +I+G+ GI+ AY TGRGSI +RGV
Sbjct: 184 NLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIMGQEGIREAYTTGRGSITLRGV 243

Query: 254 SHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + +E         RE I++TE+PYQ NKAAM+EKIAELV EK++  IAD+RDESDR+G R
Sbjct: 244 ATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGMR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A   V+LN LY+ T LQS F VNM+A+   +P   TL   L+AF+ FR EV+
Sbjct: 304 VVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGEPRTLTLRDALQAFLDFRAEVI 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +R H+L G  +A+  LD V+ +IR + +  TAR EL            
Sbjct: 364 ERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAELQA---------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T+ LSE Q   IL+++L RLT L  + I+ E   L  +I +  D
Sbjct: 414 ----------------TLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRD 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+ R R++ II +EL  +K    +PRR+R+     +++  D I   + V+ ++  GY+K
Sbjct: 458 ILARRERVMQIISEELQQLKSRFASPRRSRLCLEDCELKVADLIENRETVIFLTEQGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  ++ Q R  +G++G  ++D+D +   F   +H ++LFF+  G VY    + +P G
Sbjct: 518 RMDLEEFQVQGRATRGKAGARIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQG 577

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG A++ +L + + ER+T+++P  E     ++ Y+V  T+ G +++  LS F  + 
Sbjct: 578 SRTARGSAIVQLLPITREERVTSMVPVSE---FSDDEYLVMLTRAGYIKKTALSAFANVR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
            +G IA+ L+  DE+  V      +D+++ T+ G C+RF     ++   GR + GVR I+
Sbjct: 635 SNGLIAISLEENDELRWVRRARSSDDVVMATRQGMCIRFRADDEQLRPLGRATRGVRAIT 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++SM I+        ER                                     
Sbjct: 695 LNPGDDIVSMDIIFAESVMAAER------------------------------------- 717

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +  +L   ++L ++++G GKR++   FR  NR GKG+ AT      E   L A+  VN
Sbjct: 718 --EGERLANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATKF--RQESDELAALRIVN 773

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             D+I+LV+ +G ++R     I   SR   GV++     ++ +V V  +  S I D
Sbjct: 774 AEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPASFIRD 829


>gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4]
 gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4]
          Length = 856

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/898 (38%), Positives = 539/898 (60%), Gaps = 86/898 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+ + K AR
Sbjct: 24  QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 83

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+YDA+ RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 84  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 143

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   + D+ K+TVDFRPNYD +  EPVVL  R PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 144 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 203

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ +  + ++D+    +D LM+ ++GPDFPTG  +    G+ +AY TGRG++ +RG   I
Sbjct: 204 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEI 263

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+     + IV+ EIPY +NK++++EKIA LV E+RI  +ADLRDESDR+G RVVI+LKR
Sbjct: 264 EERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKR 323

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D+++N LY+YT L+S + +NM+A+   +P+   L   L  F+  R E+++RRT+Y 
Sbjct: 324 GTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYD 383

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LMQR                
Sbjct: 384 LRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR---------------- 427

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q++AIL++RL RLT L  + + +E   L  +I+    IL +   
Sbjct: 428 ----------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEV 477

Query: 497 LLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  ++++E   ++D   T RRT  +++ L  +  ED I  +D+V+T+S  GY+KR  L  
Sbjct: 478 LRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDN 537

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +G+   D+DFV +    + H  +L F++ G +++ KV ++  GS  A+G
Sbjct: 538 YQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKG 597

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N+L L + E +TT++   E      + + +F TK G V+R+  S + +  + G IA
Sbjct: 598 VHIANLLPLEKDEWVTTVLSVREFAE---DRFFLFVTKRGMVKRSSASLYARARKGGLIA 654

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     ++ ++LTT  G  +RF    +R    R++ GV+G++L+  D+V
Sbjct: 655 VGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMG-RSATGVKGVALSGDDRV 713

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++ A++   D   +                                              
Sbjct: 714 VACAVLPGDDTSTE---------------------------------------------- 727

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I+++S  G+GKRT    +R+ +R GKG++   V+   + G ++   PV D++ ++L
Sbjct: 728 ----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALVL 781

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE---AESTE 910
           ++    +IR+ V+E+R   RAT GV++    +   VV  +R+ E E+V+E   A+S+E
Sbjct: 782 LTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 839



 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 93/257 (36%), Gaps = 14/257 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +   + V+  G VKR   S+Y   R+G  G   V +RD+D +  + 
Sbjct: 610 EWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKG--GLIAVGLRDDDELIMVR 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            +     V+  +  G   +     +      A G   +  ++L+  +R+      P D++
Sbjct: 668 EIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATG---VKGVALSGDDRVVACAVLPGDDT 724

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDIL 697
           S     ++  + +G  +R ++  +   +R GK          + D ++       +  ++
Sbjct: 725 STE---IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALV 780

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L T   + +R  +  +R    R ++GV  + L +G  V+    V   +   +        
Sbjct: 781 LLTSTNKIIRMSVDEVRSVG-RATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 839

Query: 758 MSAQRRLISGDTEEITS 774
                      TE    
Sbjct: 840 QKTAPEGGDAGTEGTAG 856


>gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6]
 gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6]
          Length = 903

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/872 (43%), Positives = 536/872 (61%), Gaps = 49/872 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E  +   + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEESERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  +              
Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPAL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRG+ LA GDQV+S+ +      VL    +   +   +
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGDVLTVTENGYGKRTVL 782

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                + R   G      S +N S V     E+            + +++ G   RT   
Sbjct: 783 SEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED--------GDEFMMITDAGTLVRTRVA 834

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     R+ +G+     ++   +  L  +  V
Sbjct: 835 EVSQVGRNTQGVTLIRTAEDESVVGLQRIDEV 866


>gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
          Length = 867

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/923 (37%), Positives = 512/923 (55%), Gaps = 98/923 (10%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   ++     + + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDEQTTNARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    +++PD   + L+E    +I GPDFPTGA ILG 
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+  I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299

Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE+  R G R+VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRTK+ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L++                           + +  +Q  AIL L+L RL  L R  I
Sbjct: 420 RAGLIE--------------------------LLDVDAIQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL+   R   II  EL  + D+    RRTRI+    +M  ED I
Sbjct: 454 MDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    E I  ++     E +    ++V ATK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---FLVLATK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V++  LS +      G IA+ L        DE++S +T   + D++L ++ GQ VRF
Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRF 690

Query: 709 PISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  ++   GR++ GVRG+     D+++SM +                           
Sbjct: 691 TATEDQLRSMGRSTSGVRGMKFRGDDELLSMEV--------------------------- 723

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           +L V+E G+ KRT   ++   +R   G+
Sbjct: 724 --------------------------PRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGV 757

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           R   +  ++E G LV    V  ++ ++++++ G L++V  +++R  +R T GV+     +
Sbjct: 758 RVGKL--VDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDE 815

Query: 888 DERVVSVERIRESEIVDEAESTE 910
            +R++++ R  +S   DE + +E
Sbjct: 816 GDRIIAITRNPDSGDEDETDESE 838



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 108/273 (39%), Gaps = 24/273 (8%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  +         D +V  +  G VK+ PLS+Y + R G  G   + +R++     D 
Sbjct: 608 EHIAQVLAIRTYEDADFLVLATKRGLVKKTPLSLYNSPRSG--GIIAINLREDEDGKPDE 665

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIM 634
           +     +     ++  S  G   +           ++ G++   +  +     + + ++ 
Sbjct: 666 LVSAQTIMADEDLILVSRDGQAVRFTA---TEDQLRSMGRSTSGVRGMKFRGDDELLSM- 721

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCT 691
                E   +N  ++  T+ G  +R  + ++   +R   G    KL D R  ++      
Sbjct: 722 -----EVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGGLVGALVVR 776

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            + D+++ T+ G+ V+   S +R    RN++GV      +GD++I  AI  + D+  ++ 
Sbjct: 777 PDEDVMVITESGKLVQVNASDVRP-TARNTMGVIFARPDEGDRII--AITRNPDSGDEDE 833

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
               ++  +     +   E       D + + +
Sbjct: 834 TDESENTESMEGTDAPADEASAPAGGDDTADAD 866


>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 816

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/897 (39%), Positives = 529/897 (58%), Gaps = 86/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  V I +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+   K
Sbjct: 4   ENTTGKVLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGD PAA R
Sbjct: 64  PYKKSARIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+D+ KDTVDF PNYD S +EP VL ++ P +L+NG  GIAVGMATN
Sbjct: 124 YTEVRMAKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+G V +IDNPD+++  LM  I+GPDFPTGA ILG+ GI +AY TGRG + 
Sbjct: 184 IPPHNLCEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACILGKEGITSAYNTGRGVVK 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           IR  + I   +  +  IV+TEIPYQVNKA +++ IA L ++  I  I  + D S  + G 
Sbjct: 244 IRAKAEIVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGM 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++V+ELK  A  DV+LN+LY++T+LQS F + M+AL   +P    L  +L+ ++  +++V
Sbjct: 304 KIVVELKSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQPRVLNLKQVLEYYLEHQKDV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+DRAH+L GL IA+ N+D V+  IR S   E AR  LM+         
Sbjct: 364 ITRRTRYELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALMEN-------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q +AIL++RL RLTGL R  I  E   L   I    
Sbjct: 416 ------------------FKLSQRQAQAILDMRLQRLTGLERKKIDEEYVDLLETIDWLE 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +++ IIK++L  +K      RRT I     +M+ ED I  ED+VVT+SH GY+
Sbjct: 458 SVLADEHKVMNIIKEDLQEMKKRFGDERRTEISIDSSEMDIEDLIAEEDIVVTISHQGYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR  L  +R+Q+RGG G++G   +  +D    LF+ +TH ++LFF++ G VY++K + +P
Sbjct: 518 KRQTLDNFRSQKRGGVGKTGGSGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G A+IN+L+L  GE+IT ++P  E        Y+  AT  G V++  L D   
Sbjct: 578 EASRTAKGTAIINLLALMPGEKITAVIPVKEFREEQ---YMFMATNKGTVKKINLKDLES 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + ++G IA+ LD  ++++ VE     ++I+L T+ G  +RF    +R    R + GV+GI
Sbjct: 635 VRKNGMIAINLDDDEDLIGVELTDGNSEIILATRNGIAIRFDEQDVRTMG-RTAHGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL  GD+V++M  V   D++                                        
Sbjct: 694 SLNYGDEVVAMDSVSDEDSE---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LT +E G GKRT   ++R   R GKGI    +++  + G ++ +  +
Sbjct: 714 ------------VLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITE--KTGLVIGMKVI 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           N + +I++++  G +IR  V++I    R T+GV + +   D++VVS+  I   E  +
Sbjct: 760 NPDQEIMMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEEDAE 816


>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 806

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 542/887 (61%), Gaps = 87/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +KG+  V + ++M+ SYL Y+++VI+ RA+PD++DGLKPVHRRI++GM  +G++ N 
Sbjct: 3   EIYDKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNG 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+VMGK+HPHG+++IYDA  R+AQ+++ R  L++GQGNFG++DGD  AA R
Sbjct: 63  PYRKSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTELRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EV++G ++ IDN +I +D LM  I+GPDFPTGA I+GR GIK AY TGRG I 
Sbjct: 183 MPPHNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGKIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE+    R +IVV EIPYQVNK+ ++ KIAELV+ K I  I+ +RDES R+G R
Sbjct: 243 VRAVAEIEEEKNKR-RIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKR A+ +V+LN+LY+ T +Q+ F +  +AL    P+   L  ++  +V  +  VV
Sbjct: 302 IAIDLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA+ RAH++ GL IA+ N+D ++ I+R S N + A+ +  +          
Sbjct: 362 TRRTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++R+ RLTGL R+ +  E   L   I E  +
Sbjct: 413 -----------------FGLTEIQGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL +  +L+ IIK EL+ ++D+    RRT I     +++ ED I  ED+V+T++  GY+K
Sbjct: 456 ILENHEKLMSIIKDELIEIRDKFGDLRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P   Y+ Q+RGG+G S +  R+EDFV DLFI STH  +LFF++LG  Y  K + +P  
Sbjct: 516 RMPEGTYKPQKRGGRGISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPES 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q++G A+INIL+L+  E++ +I+P  E +    NL +V ATK G ++R    +   I 
Sbjct: 576 SRQSKGTAIINILNLSANEKVQSIIPVREYD---PNLNIVMATKDGIIKRISFEEIKNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SG  AM L   D I+     T E++++L TK G  +RF    +R+  GR S+GV+ I L
Sbjct: 633 KSGINAMTLRDGDSIIGTRLTTGEDELILVTKKGMSIRFKEDEVRL-TGRTSMGVKAIEL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+   +V                                                
Sbjct: 692 NKDDEVVGFDVVS----------------------------------------------- 704

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  ++++L +S+ GFGK T   ++RI +R+GKGI    V   ++ G LV+   ++ 
Sbjct: 705 ------ADKYLLVISQNGFGKLTPIDEYRIQSRAGKGIITYKVK--DKTGDLVSAKIIDK 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ND+I++++ +G +IR+    I +  R+T GV + +  KD  VV+V +
Sbjct: 757 NDEIMMITSEGIIIRIETEGISVMGRSTSGVKLMNI-KDSEVVAVAK 802



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 79/216 (36%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ ++  T+ G   R P    +    R   G+  ++  + D V  + I    D   
Sbjct: 498 IIKEEDVVITLTQFGYIKRMPEGTYKP-QKRGGRGISALTTREEDFVNDLFITSTHDLIL 556

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R   +K               I ++ N S+ E   S    +E       ++  +
Sbjct: 557 FFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPVREYDPNLNIVM-AT 615

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  KR S  + +   +SG            +  +++        D++ILV+ KG  IR
Sbjct: 616 KDGIIKRISFEEIKNIRKSGINAMTLR-----DGDSIIGTRLTTGEDELILVTKKGMSIR 670

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +E+R+  R + GV      KD+ VV  + +   
Sbjct: 671 FKEDEVRLTGRTSMGVKAIELNKDDEVVGFDVVSAD 706



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 115/292 (39%), Gaps = 25/292 (8%)

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAM 676
            I++L     +  I+   E  S + +  +   T+     R K        R+     + +
Sbjct: 330 GIINLALVNGVPKILNLKELISYYVDHQINVVTR-----RTKFDLEKAKARAHIVEGLKI 384

Query: 677 KLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQ 734
            LD+ D I+  V +   +++  +       +        +    R   G+    L +  +
Sbjct: 385 ALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEIQGQAILDMRIRRLTGLEREKLDEEYK 444

Query: 735 VISMAIVLHAD--ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +   I    +   ++++ +  +K    + R   GD            ++    E   ++
Sbjct: 445 ELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFGDLRRTV-------IKSAAGEIDLED 497

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +E  ++T+++ G+ KR     ++   R G+GI A    + + +  L   F  + +D 
Sbjct: 498 IIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRGISALTTREEDFVNDL---FITSTHDL 554

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
           I+  ++ G    +   EI  +SR +KG  I +    + +E+V S+  +RE +
Sbjct: 555 ILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPVREYD 606


>gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345]
 gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345]
          Length = 903

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/877 (43%), Positives = 526/877 (59%), Gaps = 50/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  
Sbjct: 186 NLNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIE-EENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 305 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+   W    +K +++ 
Sbjct: 365 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEK 424

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 425 AGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIA 484

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V       RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 485 ALLFILGSPERLMEVIKEELEEVLTNFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 544

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 545 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 604

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L +GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 605 LPLASRTARGRPIVNLLPLAEGERITAILPVREYAE---DKYIIMATSHGTVKKTALTAY 661

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF   A             
Sbjct: 662 SNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721

Query: 717 ----------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSA 760
                      GR + GVRGI L  G  V+S+ +      +L    +   +   +    A
Sbjct: 722 TGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPA 781

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           + R   G      S +N + V      E           I+ +S KG   RT +      
Sbjct: 782 KSRGTKGVVSIKVSERNGAVVGAVQVGE--------NDEIMLISNKGTLVRTPATGVSSI 833

Query: 821 NRSGKGIRATDVSKINEIGAL-----VAVFPVNDNDQ 852
            R+ +G+     ++  ++  L     + V  V  +++
Sbjct: 834 GRNTQGVTIIRTAEDEKVVGLQRIDEIQVPDVELDEE 870



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 106/289 (36%), Gaps = 35/289 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  ++  +  G VK+  L+ Y   R    G   V ++D D +  + 
Sbjct: 627 ERITAILPVREYAEDKYIIMATSHGTVKKTALTAYSNPR--VNGIIAVNLKDGDQLIGVD 684

Query: 582 IVSTHTSVLFFSSLGFVYKEK--------------------VWRLPIGSPQARGKALINI 621
           I   +  ++ FS+ G V +                      V  L      A G   +  
Sbjct: 685 ITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATG---VRG 741

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLD 679
           + L  G+ + +++             ++  T++G  +R  L+++   +R   G +++K+ 
Sbjct: 742 IKLEDGQTVVSLIV------PKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVS 795

Query: 680 S-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
                ++      + ++I+L +  G  VR P + +     RN+ GV  I  A+ ++V+ +
Sbjct: 796 ERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIG-RNTQGVTIIRTAEDEKVVGL 854

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             +        E       +  +    +    E  + + + +    I +
Sbjct: 855 QRIDEIQVPDVELDEEGNPIIVEGAAGTEVQAEAVNTEAEVTETPKIED 903


>gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191]
 gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191]
          Length = 840

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/899 (41%), Positives = 540/899 (60%), Gaps = 82/899 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S  I +EM+ SY+ YA++VI+GRA+PD+RDGLKP+HRR+L+GM +MG+++NK + K 
Sbjct: 14  NIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMNEMGLKYNKSFKKS 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMGKYHPHG++AIYD+L R+AQD+SLR  L++GQGNFGSVDGD  AA RYTE R
Sbjct: 74  ARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVDGDMAAAMRYTEVR 133

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L++ A  +L+D+ K+TV F  NYDGS QEP VL A+ PN+LVNG  GIAVGMATNIPTHN
Sbjct: 134 LERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSGIAVGMATNIPTHN 193

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV D  + VI NP +    LM II+GPDFPTGA+I GR GI + + TG+GS+ ++  +
Sbjct: 194 LSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIICGRKGIFDYFETGKGSVKVQARA 253

Query: 255 HIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE+   G R  IVVTEIPYQVNK  ++E IA LV++K++ DIAD+RDESDR+G R+VIE
Sbjct: 254 EIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADIRDESDRRGMRLVIE 313

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR   A V+LN LY++T LQ+ FSVNM+A+   +P    +  ++K +V  R+EVV  RT
Sbjct: 314 VKRDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGRPRILPIKEVMKCYVKHRKEVVTART 373

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA+ R H+L GL IA+ANLD+V++IIR + +P  A+  L++              
Sbjct: 374 RFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALIRE------------- 420

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q++AIL++RL +LT L    I  E   L   I E   IL  
Sbjct: 421 -------------FALSEPQSQAILDMRLHQLTQLSSASIEKEQKELLALIAELKGILED 467

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L II  EL  +K +  T R+T I    L DM  ED I  ED+V+T+S+ GY KR+P
Sbjct: 468 PQKVLAIIVDELKGLKKDYGTERKTEISNTELSDMTMEDLIEEEDVVITLSNDGYAKRIP 527

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR Q RGGKG  G   ++EDF+  LF+ STH ++L F++ G V+  + + +P G+  
Sbjct: 528 LDTYRTQNRGGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRL 587

Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           ++GKA++N+L ++  E+IT+ +   + D  +    Y+   T+ G ++R +L DF  I +S
Sbjct: 588 SKGKAIVNLLQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKS 647

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  D + SV+    ++D+++ T+ G+ +RF    IR    R + GVRGI L K
Sbjct: 648 GIIAIGLEDGDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAMG-RQAKGVRGIRLGK 706

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M   L      D                                          
Sbjct: 707 DDIVVGMEHALKDAPGPD------------------------------------------ 724

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L+V E G+GKRT   ++R  NR G G      ++ N  G +V +  V+++ 
Sbjct: 725 --------VLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERN--GKVVGIKLVDESK 774

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            ++++++ G  +R+   EIR   R  +GV +   A+ +++  +  + +    +     E
Sbjct: 775 DLMVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARIAPVIKDNDEEACGGEE 833


>gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
 gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
          Length = 812

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/893 (39%), Positives = 524/893 (58%), Gaps = 85/893 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +V+I  EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF   ++   +N+   KCAR
Sbjct: 3   QNVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+Y+AL R+AQD+S+R  L +GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 63  IVGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   L+D+ K+TVDFRPNYD +  EPVVL  + PN+L+NG  GIAVGMATNIP HNL 
Sbjct: 123 RLASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLS 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ D  + +ID P+  ++ LM++++GPDFPTG  +    G+ +AY TGRG++ +RG   I
Sbjct: 183 ELSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAGQGLYDAYTTGRGTVKVRGKVEI 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E      + +++ EIP+ +NK++++EKIA L+ +++I  ++DLRDESDR+G RVVIELKR
Sbjct: 243 EDRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKR 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   ++++N LY+YT L++ F +NM+A+   +P    L   L  F+  R EVVVRRTK+ 
Sbjct: 303 GTMPEIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALAYFLDHRREVVVRRTKFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL  A+ ++DEVV +IR S  P  A+  LMQR                
Sbjct: 363 LRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQR---------------- 406

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSEVQ +AIL++RL RLTGL R  I  EL  L  +I     IL   S 
Sbjct: 407 ----------FELSEVQAQAILDMRLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASV 456

Query: 497 LLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L G+I+ E+  +K    TPRRT  I E L +++ ED +  +D+V+T+S  GY+KR  L +
Sbjct: 457 LWGVIRDEVEYIKQTYSTPRRTEVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGI 516

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +GV   ++DFV +    + H  +L F++ G +++ KV ++P GS  A+G
Sbjct: 517 YQQQRRGGKGVAGVHTGEDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKG 576

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N++ + + E + TI+   E      +   +FAT+ G V+R+  + + +  + G IA
Sbjct: 577 VHIANLVPMEKDEWVNTILTVREFAE---DKSFLFATRRGMVKRSSAALYARSRKGGLIA 633

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V   T ++ ++L T  G  +RF    +R    R + GV+GI+L  GD V
Sbjct: 634 VGLREDDELIMVREITDDDFVVLATADGIAIRFSCRDVRNMG-RGATGVKGIALRHGDTV 692

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  +                                                    LK 
Sbjct: 693 VACLV----------------------------------------------------LKE 700

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I+T+S  GFGKRT+   +R+ +R GKGI    V+   + G ++    V D++ ++L
Sbjct: 701 DSPAIMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTP--KTGPVIGAKSVLDDEALVL 758

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++    +IR+ V+EIR   RAT GV +       RVV  + +      +  E+
Sbjct: 759 LTSTNKIIRMGVDEIRSVGRATIGVRLVKLDDGARVVGFDTVNSDADAEGEEA 811


>gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152]
 gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152]
          Length = 838

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/890 (40%), Positives = 553/890 (62%), Gaps = 85/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++    Y
Sbjct: 3   EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQDWS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD   N+D + QEPVVL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G VA I+N DI++D LM+ +  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE I+VTEIPYQVNKA M++K A+LV EK+I  IA++RDESDR G R+V
Sbjct: 243 AKAVIEEVK-GRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA  RAH+L GL IA  N+DEV++IIR S N + AR  L++R           
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E + + + I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK ELL +K++    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYQIIKDELLHIKEKYGDERRSTIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLDEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++ Q + +   +   +  +E   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L    G+ +RF  +  R    R + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPMG-RTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D+VI M  V   +++                                         
Sbjct: 695 QHENDEVIGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+RI+NR GKG++  ++S+  + G LVA+  V+
Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D++ +++++  G +IR+ V ++R+  RAT+GV + +   D+ + +V ++ 
Sbjct: 761 DSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINIKDDDSIAAVAKVV 810



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 107/244 (43%), Gaps = 13/244 (5%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
            +  +    V+  +  G VK+  L  Y   R    G + + +++ D + +  + +  + V
Sbjct: 605 NEEYINSHYVIMATKKGQVKKTSLEQYSRPR--TNGINAITIKEGDELLEAKLTTGDSQV 662

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +   + G   + +  +       A G  +  I   ++ + +  ++   + ES+     ++
Sbjct: 663 MLALASGKSIRFEEAKTRPMGRTASG--VRGITLQHENDEVIGMVAVNDMESN-----IL 715

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCV 706
             ++ G  +R+ L D+   NR GK    L+  ++   +++++     ND+++  K G  +
Sbjct: 716 VVSEKGYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINKSGLVI 775

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  +  +RV   R + GVR I++   D + ++A V+H +   +E     ++ +      S
Sbjct: 776 RMAVEDLRVMG-RATQGVRLINIKDDDSIAAVAKVVHEEEAEEESADETENGTNIENNTS 834

Query: 767 GDTE 770
            + E
Sbjct: 835 DNQE 838


>gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
 gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
          Length = 805

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/886 (43%), Positives = 526/886 (59%), Gaps = 86/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILF   Q GV   +K+VK A
Sbjct: 4   VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I GEVMGKYHPHG+AAIYDALAR+AQ W+LR  L++GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 +L D+ K+TVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HNL
Sbjct: 124 SPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EVVD  VA+IDNP I L+ +M  + GPDFPTG   L R GIK AYATGRGS+ +R    
Sbjct: 184 SEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGG-RLSRKGIKEAYATGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E   G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DI  LRDESDRQG R+ IELK
Sbjct: 243 VE-EKGSRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LNQLY++T+LQS F+VN++A+   +P   +L+ +++ ++  R+EVV RR+ +
Sbjct: 302 RGANPQVVLNQLYKHTALQSSFTVNLLAIVEGEPRVLSLLDLMRHYLDHRKEVVRRRSLF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ ++DEV+ +IR S +   ARR LM+R               
Sbjct: 362 DLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL    
Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEG 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G +K+ELL VK++    RRT + E       ED I  E MV+T++  G++KR+PL  
Sbjct: 456 RLWGEVKRELLRVKEKYGDARRTLLTEFEESFNPEDLIEDEPMVITLTAQGFLKRLPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGGKG      ++ED  T +F+   H  +L FS+ G VY+ KV+ LP    QARG
Sbjct: 516 YRAQGRGGKGLMAGKTKEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             +  +L L + E +  ++     E      Y+VFAT+ G V+R  L ++  +   G IA
Sbjct: 576 VHVKTLLPLAEEEEVAALLAVRGLEGEG---YLVFATERGLVKRTALKEYANLGTGGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734
           ++L   D ++ V     E++ +L T  GQ +RFP+  +R   GR++ GV GI   K  D+
Sbjct: 633 IRLLEGDRLVGVALSDPEDEAILATAEGQAIRFPLEEVRA-TGRDTQGVVGIRFKKPQDR 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+  V   +                                                 
Sbjct: 692 VVSLVTVKPGEM------------------------------------------------ 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L+VS +G+GKRT   ++ +  R G G+    VS    +G L A+  V   + ++
Sbjct: 704 ---VDLLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVSAR--VGRLAALLKVRGTEDLL 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++S KG  +R PV EIR  SRAT GV I +  +++ + S   + E 
Sbjct: 759 VLSKKGLTLRTPVAEIRQYSRATAGVKIMNLPEEDEIASAFVVEEE 804



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 61/286 (21%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD  DE++++   +++       + G   RF +S  +  A  +    R ++L +  
Sbjct: 376 LLIALDHIDEVIALIRASEDAP---AARRGLMERFGLSEAQAQAILDMRLQRLVALEREK 432

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +     ++   A     +     +  + +      +E       + +         ++L
Sbjct: 433 LLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDARRTLLTEFEESFNPEDL 492

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV--------- 844
              E  ++T++ +GF KR     +R   R GKG+ A    + +E   +            
Sbjct: 493 IEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGKTKEEDEATHVFVADAHDDLLVF 552

Query: 845 -----------------------------FPVNDNDQ---------------IILVSDKG 860
                                         P+ + ++               ++  +++G
Sbjct: 553 SNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEVAALLAVRGLEGEGYLVFATERG 612

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            + R  + E       T G++     + +R+V V     S+  DEA
Sbjct: 613 LVKRTALKEYANLG--TGGLIAIRLLEGDRLVGVAL---SDPEDEA 653


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/893 (40%), Positives = 530/893 (59%), Gaps = 86/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+  +K + K
Sbjct: 2   ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GE +GK+HPHG+ A+YDAL RMAQD+S+R  LIEGQGNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL D+ KDTVDF+PN+DGS +EP VL A++PN+LVNG  GIAVGMATNIP H
Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV      ++D+P+   + LM+ I+GPDFPTGA ++    +   Y  GRGS+ IR  
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINPEELPKIYKKGRGSVTIRAK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    R  IV+TE+PYQVNKA +++KIAELV+EK+I  IAD+RDESDR+G RVVIE
Sbjct: 242 HTIEEVRK-RSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+  V+LN+LY+ T LQ+ F+ NM+AL   +P+   L   L+ F+ FR EV++RRT
Sbjct: 301 LKRDATPQVVLNRLYKLTPLQTNFNFNMIALVNGEPKLLNLKRYLEEFIGFRREVILRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            YLL KA  R H+L GL  A+ N+D VV++++ +P+P+ A   L ++             
Sbjct: 361 AYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREK------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL+++L RLTGL R+ I  E  +L  E      ++ S
Sbjct: 408 -------------FELSEAQAKAILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMES 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
                 +IK+E+  + ++    RRT+IV    +++ E  I  E++++ ++H G+V RV  
Sbjct: 455 DQEQRRLIKEEMAQIIEKFGDQRRTKIVSKESEIDIESMIEDEEVIIFLTHKGFVARVSA 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q R G G  G+  R+ DFV D+   S+   +L F++ G VY  K + +P     +
Sbjct: 515 GTYRTQSRSGTGVRGIKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPS 574

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           RG ++ N L  +   E ++ I+P  E   + +   V F T+ G V+R  L +F     +G
Sbjct: 575 RGHSIRNFLPGMAGNEIVSRIIPVKEFSLNKD---VFFVTQRGYVKRTPLKEFSNPRSTG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L+  D ++ V   + +++I+L +K G+ ++FP++ +R    RN+ GVRGI L   
Sbjct: 632 INAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQMG-RNARGVRGILLDPD 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V++ A+V   D                                               
Sbjct: 691 DSVVAAAVVEPED----------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                +F+L V+EKG+GKR    +F +  R GKG+ A  +S+  + G +     + D++ 
Sbjct: 704 -----RFLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSE--KTGKVADATTLKDDEP 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           IILVS KG +IRV   +I +  R T+GV I   A+D+ VVSV ++ E+E  ++
Sbjct: 757 IILVSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAEEEND 809


>gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ]
 gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ]
          Length = 910

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/901 (42%), Positives = 539/901 (59%), Gaps = 66/901 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A+ID+P++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE     G R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARAEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQPRLLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVE 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  YLS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S  RLL +I++EL  +K E    RRT IV   +D+   D I  E+ VV
Sbjct: 483 LGQIGELIRILTSPERLLEVIREELEKIKAEFGDARRTEIVASQVDLTIADLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG++   ++DED+V  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE---------- 640
            K + +P  S  +RG+ L+N+L L++GE IT ++             +DE          
Sbjct: 603 LKTYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDEAEGALLE 662

Query: 641 --------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                               +     Y+  AT  G V++  L  F +  ++G IA+ L  
Sbjct: 663 GEVVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGLIALDLVE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++  T     +++L +  G+ +RF    +R    RN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTMG-RNARGVRGMKLGKGQRLISMLI 781

Query: 741 ------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +L A      +   +     + R   G    +T+ +N + +      E      
Sbjct: 782 PESGAQILTASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIGAVQVRE------ 835

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF-PVNDNDQI 853
              + I+ +S++G   RT   +     R+ +G+    +++   +  L  V  P ++ D++
Sbjct: 836 --GEEIMLISDQGTLVRTRVDEVSSLGRNTQGVMLIKLARDETLVGLERVQEPSDNGDEL 893

Query: 854 I 854
            
Sbjct: 894 F 894



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 15/238 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+VPL  +   R+   G   + + + D +           V+ FS
Sbjct: 685 PTGAYIFMATAFGTVKKVPLVQFSRPRKA--GLIALDLVEGDTLIAAATTDGAKEVMLFS 742

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V +     +      ARG   +  + L +G+R+ +++  PE     +   ++ A++
Sbjct: 743 DAGKVIRFAERVVRTMGRNARG---VRGMKLGKGQRLISML-IPE-----SGAQILTASE 793

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  LS F +  R G   IAM  +     ++      +  +I+L +  G  VR  +
Sbjct: 794 RGYGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIGAVQVREGEEIMLISDQGTLVRTRV 853

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     RN+ GV  I LA+ + ++ +  V     + DE     +   A       D
Sbjct: 854 DEVSSLG-RNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDEETTPAGVAEGGED 910


>gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49]
          Length = 851

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/909 (41%), Positives = 541/909 (59%), Gaps = 87/909 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +++NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWIKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ +                                      V    L D  
Sbjct: 601 PQGSRNSRGRPI--------------------------------------VNMFPLQDGE 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +IN              +L V+  + +  + + T LG   + P+ A   F+     G+  
Sbjct: 623 KIN-------------VVLPVKEFSADKFVFMATSLGTVKKTPLEA---FSRPMKKGIIA 666

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  GD +I  +I        D     M    A + +   + +     +    V G   
Sbjct: 667 VGLDDGDYLIGASIT-------DGAHDVMLFSDAGKAVRFDENDVRPMGREARGVRGMQL 719

Query: 787 EERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           E+  Q + L     +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +
Sbjct: 720 EDGQQVIALLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKV 777

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E
Sbjct: 778 VAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837

Query: 902 IVDEAESTE 910
             D  E+ E
Sbjct: 838 EGD-GEADE 845


>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
          Length = 848

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/898 (40%), Positives = 539/898 (60%), Gaps = 93/898 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + K
Sbjct: 7   DKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVDF PN+D + +EP+VL +RYPN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL E++   V +IDN      +  L+ +MEI++GPDFPTGA ILGR GI+ AY TGR  I
Sbjct: 187 NLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATILGRRGIEEAYRTGRAKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V++IE  +  + +I+VTE+PY VNKA ++EKIA+LV+EK+I  I  + DES+R+G 
Sbjct: 247 KVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L+ ++  +EEV
Sbjct: 307 RINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQPKVLNLHQMLEEYLKHQEEV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR + N   A+ +LM+R        
Sbjct: 367 VTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AI+++RL  LTGL R+ + NE   L  +I+E  
Sbjct: 419 ------------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELK 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+   +LL +I+ E++ + D+    RRT I     DM  ED I  ED ++ ++HLGY+
Sbjct: 461 AILADEKKLLTVIRDEIMIISDKYGDDRRTAIGYD-DDMSMEDLIPDEDTIIAMTHLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +R+Q RGGKG  G+   +ED++ DL + + H  ++FF++ G VY+ K + +P 
Sbjct: 520 KRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKAYEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A+IN+L L   E+IT I+P  E     ++ Y+  AT++G V++  + ++  +
Sbjct: 580 AGRTARGTAIINLLQLMPEEKITAIIPMREFN---DDKYLFMATRNGMVKKTPMVEYEHV 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DILL T+ G C+RF  + +RV  GR S+GV G+ 
Sbjct: 637 RKNGLQAIVLRDGDELIEVKATDNSQDILLVTRKGMCIRFNETDVRV-TGRVSMGVIGMR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+VI M +    D+                                          
Sbjct: 696 FEDDDEVIGMQMQSQGDS------------------------------------------ 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L VSE G GKRT   +F   NR GKG+     +  ++ G LV    VN
Sbjct: 714 -----------LLVVSENGMGKRTMITEFSAQNRGGKGVICYKCT--DKTGYLVGAKLVN 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVD 904
           D  +I++++ +G +IR+ V++I +  R T GV + S  +D   +V S+ ++RES   D
Sbjct: 761 DGREIMIITTEGIIIRMTVDDISVIGRNTSGVKLMSIDQDSDIKVASIAKVRESVTKD 818



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 71/464 (15%), Positives = 153/464 (32%), Gaps = 47/464 (10%)

Query: 340 NMVALNGYKPERFTLIGI---------LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           N+        ERF L            L+A      E +    + L  K  +   +L   
Sbjct: 407 NVADAKNQLMERFGLSDAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAILADE 466

Query: 391 AIAVANLDEVVRIIRFS--PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              +  + + + II      +  TA            D   + DLI D    I      Y
Sbjct: 467 KKLLTVIRDEIMIISDKYGDDRRTA--------IGYDDDMSMEDLIPDEDTIIAMTHLGY 518

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNS--LGIEIKECLDILSSRSRLLGIIKQELL 506
           +  +                G   I  +     L       +   ++  R+  +   +  
Sbjct: 519 IKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRL---KAY 575

Query: 507 SVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            + +   T R T I+        E +  +        +  +   +  G VK+ P+  Y  
Sbjct: 576 EIPEAGRTARGTAIINLLQLMPEEKITAIIPMREFNDDKYLFMATRNGMVKKTPMVEYEH 635

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R+   G   +V+RD D + ++        +L  +  G   +     + +    + G  +
Sbjct: 636 VRK--NGLQAIVLRDGDELIEVKATDNSQDILLVTRKGMCIRFNETDVRVTGRVSMG--V 691

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I +   +  E I         +       ++  +++G  +R  +++F   NR GK  +  
Sbjct: 692 IGMRFEDDDEVI-------GMQMQSQGDSLLVVSENGMGKRTMITEFSAQNRGGKGVICY 744

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              D+   ++  +      +I++ T  G  +R  +  I V   RN+ GV+ +S+ +   +
Sbjct: 745 KCTDKTGYLVGAKLVNDGREIMIITTEGIIIRMTVDDISVIG-RNTSGVKLMSIDQDSDI 803

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              +I    ++   +   Y +    +    S +  E     +++
Sbjct: 804 KVASIAKVRESVTKDSNVYDEEYYEEENGDSEEESEADVDSDET 847


>gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 814

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/896 (40%), Positives = 558/896 (62%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I +V + ++M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK  
Sbjct: 3   EDNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF PN+D    EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D CVA + NP+I ++ L +I+ GPDFPTGA ILG++GIK+AY TGRG + +R
Sbjct: 183 PHNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYILGKSGIKDAYQTGRGKVKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE    +RE+I+V+EIPYQVNK+ ++EKIA+LV++K+I  I+D+RDESDR+G R+V
Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ++A+++LN LY+YT L++ F +  +AL    P+   L  +++ ++  ++EVV R
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGIPQVLNLKELIEYYIDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + +  ++   ++           
Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q++AIL+++L RL+GL  D +  E   L   I   L IL
Sbjct: 412 ---------------FNLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETISYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +KD+    RR++I+    +++ E+ I +ED+++T+++ GY+KR+
Sbjct: 457 NSEENLIKLIISEMEEIKDKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTNDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+SLG VY  K + +P GS 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q+RG A+INIL+L  GERIT +M   E      +  +V  TK G +++ +  +F  I ++
Sbjct: 577 QSRGTAIINILNLESGERITEMMTLSELNE---DSQIVLQTKDGTIKKTEAENFTNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    +E +++++TK G  ++F    +R    R + GVR I LA+
Sbjct: 634 GIIAISLKDGDKLISVRQIDKEEELIISTKKGMTIQFNSQDLRSMG-RIAQGVRAIKLAE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+SM I                                                   
Sbjct: 693 GDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K  E ++L V+E GFGK+TS  +F+  NR GKG++   V+  ++ G +V   PV+ ++
Sbjct: 702 --KGDETYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVT--DKTGKVVDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906
            I++VS  G +IR+ V +I I  R T GV + +     +R+VSV +    E  +E 
Sbjct: 758 DIMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSVTKYSALEEEEED 813


>gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
 gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
          Length = 900

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/872 (43%), Positives = 536/872 (61%), Gaps = 49/872 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E  +   + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  +              
Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
                           GR + GVRG+ LA GDQV+S+ +      VL    +   +   +
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKNDGDVLTVTENGYGKRTVL 782

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                + R   G      S +N S V     E+            + +++ G   RT   
Sbjct: 783 SEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED--------GDEFMMITDAGTLVRTRVA 834

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     R+ +G+     ++   +  L  +  V
Sbjct: 835 EVSQVGRNTQGVTLIRTAEDESVVGLQRIDEV 866


>gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
 gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
          Length = 852

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/860 (42%), Positives = 539/860 (62%), Gaps = 30/860 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   NQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYD S +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+ C+A++ N +I +D L+++I  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVEACLALLKNSNISIDELIDLIPAPDFPTAGIIYGVNGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G+R+ I++ E+PYQVNKA +L +I ELVR+K+I  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T +Q  F +NMVAL   +P    L  IL AF+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQILDAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+  LM ++W++  ++
Sbjct: 362 VTRRTVFELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVE 421

Query: 429 DLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++      +  +  +G            +LS+ Q +AILELRL RLTGL ++ I  E  
Sbjct: 422 EMLTRAMADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYK 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I + LDIL++  R+  II +EL ++K +    RR+ IV    D+  ED I   D+
Sbjct: 482 DVIEKIIDYLDILANPERITQIITEELDAIKLQFGDERRSEIVVDTQDLSMEDLITPADV 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  YRAQ+RGG+G+     +++DF+  LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P G  Q+RGK +IN + L +GE+I  I+P    ++   N +V  AT  G V+
Sbjct: 602 YWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPV---KTFDENRFVFMATSFGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ VE    ++D++L +  G+ +RF  + +R    
Sbjct: 659 KTPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPMG- 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD-------ADYDERICYMKHMSAQRRLISGDTEE 771
           R + GVRG+ L  G +VISM +  + D        +   +   +   +   R   G    
Sbjct: 718 RTARGVRGMKLGPGHKVISMLVAENEDLAVLTATENGYGKRTPISEYTRHNRGTQGMIAI 777

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           ITS +N   V          +L   +  I+ ++  G   RT   + R  +R+ +G+   +
Sbjct: 778 ITSARNGKVV--------TAKLVKPDDEIMLITSGGVLIRTRVNEVREMSRATQGVTLIN 829

Query: 832 VSKINEIGALVAVFPVNDND 851
           +    ++  L  V    D+D
Sbjct: 830 LDAGEKLAGLERVVESEDDD 849



 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 100/232 (43%), Gaps = 14/232 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+ PLS +   R    G   + + + DF+  + 
Sbjct: 631 EKINAILPVKTFDENRFVFMATSFGTVKKTPLSEFSRPR--NNGIIAIGLDEGDFLIGVE 688

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  + L  G ++ +++      +
Sbjct: 689 LTEGKHDVMLFSDNGKAMRFSENDVRPMGRTARG---VRGMKLGPGHKVISMLV-----A 740

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
              +L V+ AT++G  +R  +S++ + NR        +      ++++ +    +++I+L
Sbjct: 741 ENEDLAVLTATENGYGKRTPISEYTRHNRGTQGMIAIITSARNGKVVTAKLVKPDDEIML 800

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            T  G  +R  ++ +R  + R + GV  I+L  G+++  +  V+ ++ D  +
Sbjct: 801 ITSGGVLIRTRVNEVREMS-RATQGVTLINLDAGEKLAGLERVVESEDDDGD 851


>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 853

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/918 (40%), Positives = 539/918 (58%), Gaps = 107/918 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + K
Sbjct: 7   DKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL E++   V +IDN      +  L+ +MEI++GPDFPTGA ILGR  I+ AY TGR  I
Sbjct: 187 NLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATILGRRSIEEAYRTGRAKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V++IE  +  + +I+VTE+PY VNKA ++EKIA+LV+EK+I  I  + DES+R+G 
Sbjct: 247 KVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L  ++  +EEV
Sbjct: 307 RINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQPKVLNLHQMLDEYLKHQEEV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y LNKA +RAH+L GL IA+ ++DEV+RIIR S N   A+ +LM+R        
Sbjct: 367 VRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AI+++RL  LTGL R+ + NE   L  +I+E  
Sbjct: 419 ------------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQ 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+   +LL +IK+E+  + D+    RRT I     D+  ED I  ED V+ ++HLGY+
Sbjct: 461 AILADVKKLLTVIKEEIQIIADKYGDDRRTAIGYD-DDVSMEDLIPDEDTVIAMTHLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +R+Q RGGKG  G+   +ED++ DL + + H  ++FF++ G VY+ K + +P 
Sbjct: 520 KRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A+IN+L L   E+IT I+P  E      + Y+  AT++G V++  + ++  +
Sbjct: 580 AGRTARGTAIINLLQLQPDEKITAIIPMREYNE---DKYLFMATRNGMVKKTPMVEYEHV 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DI L T+ G C+RF  + +RV  GR S+GV G+ 
Sbjct: 637 RKNGLQAIVLREDDELIEVKATDNNQDIFLVTRKGMCIRFNETDVRV-TGRVSMGVIGMR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D+VI M +    ++                                          
Sbjct: 696 FEEDDEVIGMQMESQGES------------------------------------------ 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L VSE G GKRT   +F   NR GKG+     ++  + G +V    VN
Sbjct: 714 -----------LLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTE--KTGNIVGAKLVN 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRE------- 899
           D  +I+L++ +G +IR+ V++I I  R T GV + +     D +V S+ ++RE       
Sbjct: 761 DGREIMLITTEGIVIRMSVDDISIIGRNTSGVKLMNIDQESDIKVASIAKVRESVTKESN 820

Query: 900 -------SEIVDEAESTE 910
                   E   EAE  E
Sbjct: 821 VFDEEFYDEETAEAEDVE 838



 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 72/469 (15%), Positives = 159/469 (33%), Gaps = 47/469 (10%)

Query: 338 SVNMVALNGYKPERFTLIGI---------LKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           S N+        ERF L            L+A      E +    K LL K  +   +L 
Sbjct: 405 SSNVADAKNQLMERFGLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAILA 464

Query: 389 GLAIAVANLDEVVRIIRFS--PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
            +   +  + E ++II      +  TA            D   + DLI D    I     
Sbjct: 465 DVKKLLTVIKEEIQIIADKYGDDRRTA--------IGYDDDVSMEDLIPDEDTVIAMTHL 516

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNS--LGIEIKECLDILSSRSRLLGIIKQE 504
            Y+  +                G   I  +     L       +   +++ R+  +   +
Sbjct: 517 GYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRL---K 573

Query: 505 LLSVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
              + +   T R T I+        E +  +        +  +   +  G VK+ P+  Y
Sbjct: 574 AYEIPEAGRTARGTAIINLLQLQPDEKITAIIPMREYNEDKYLFMATRNGMVKKTPMVEY 633

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R+   G   +V+R++D + ++     +  +   +  G   +     + +    + G 
Sbjct: 634 EHVRK--NGLQAIVLREDDELIEVKATDNNQDIFLVTRKGMCIRFNETDVRVTGRVSMG- 690

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
             +  +   + + +  +      +       ++  +++G  +R  +S+F   NR GK  +
Sbjct: 691 --VIGMRFEEDDEVIGM------QMESQGESLLIVSENGMGKRTVISEFSAQNRGGKGVI 742

Query: 677 KLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
                ++   I+  +      +I+L T  G  +R  +  I +   RN+ GV+ +++ +  
Sbjct: 743 CYKCTEKTGNIVGAKLVNDGREIMLITTEGIVIRMSVDDISIIG-RNTSGVKLMNIDQES 801

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            +   +I    ++   E   + +    +    + D E   +   D   E
Sbjct: 802 DIKVASIAKVRESVTKESNVFDEEFYDEETAEAEDVEAGNADAEDVEAE 850


>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
 gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 881

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/918 (38%), Positives = 545/918 (59%), Gaps = 64/918 (6%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  ++    E E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPVEPNNGVPGEFEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ L++G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GS+D DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSIDNDPPAAMRYTESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G +A+I NP++  + L +II+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQILGRNG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV+ IE        DR+ +++T++PYQ NKAA++E+IA++V +K+
Sbjct: 241 IQETYLTGRGSVTMRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R +   V+LN L++ T LQS FS NM+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPVTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L+ +L+ F+ FR E + RRT YLL KA +R H+L+GL +A+  LD ++ +IR + +   
Sbjct: 361 SLLRMLQVFLDFRVETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSV 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+ +L +                             L+EVQ  AIL+++L RLT L  D 
Sbjct: 421 AKAKLQE--------------------------LHRLTEVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L   I +  DIL+++ R+  +IK+EL+ +K++ + PRRT I++    ++D D 
Sbjct: 455 IRLEHEDLLKRIADFQDILANKPRVFDLIKKELIQLKEKYEAPRRTEILDLGGGIDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G+SG   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVNQFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+PI S  A+G  ++ +L + + E IT+++      S  ++ +++  T
Sbjct: 575 SDRGVAYSLPAYRVPISSRSAKGTPVVQLLPIPREEAITSLLSVS---SFDDDNHLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  +S F +I  +G IA+ L+  D +  V      + +L+ ++ G  + F ++ 
Sbjct: 632 KGGYIKRTLVSAFSKIRANGLIAISLEDGDALTWVRLAASGDSVLIGSRKGMTIHFRLND 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L KGD ++ M ++    AD                        
Sbjct: 692 DELRPLGRTARGVRSMNLRKGDSLVGMDVLPRELAD-----------------------R 728

Query: 772 ITSLKNDSSVEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           I    ND S   + S+    E+ + E  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 729 IAGTNNDDSDSDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAI 788

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                N+  +LV +  +   ++++ V++KG ++R   ++I   SRA  GV +      + 
Sbjct: 789 KF--RNDGDSLVGLKVLGHGEELLFVTEKGIIVRTSADKISQQSRAATGVRLQRLDSGDH 846

Query: 891 VVSVERIRESEIVDEAES 908
           +  V  +   + V + +S
Sbjct: 847 LSEVVLVPPEQEVQDDDS 864



 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 99/274 (36%), Gaps = 36/274 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        ++ ++ ++  GY+KR  +S +   R    G   + + D D +T +
Sbjct: 609 EEAITSLLSVSSFDDDNHLLMLTKGGYIKRTLVSAFSKIR--ANGLIAISLEDGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + ++  SVL  S  G    ++     L      ARG   +  ++L +G+ +  +   P 
Sbjct: 667 RLAASGDSVLIGSRKGMTIHFRLNDDELRPLGRTARG---VRSMNLRKGDSLVGMDVLPR 723

Query: 639 DESS-------------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           + +                              +V+ A+  G  +R  ++ F    R+G 
Sbjct: 724 ELADRIAGTNNDDSDSDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGM 783

Query: 674 IAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               +      D ++ ++      ++L  T+ G  VR           R + GVR   L 
Sbjct: 784 GLRAIKFRNDGDSLVGLKVLGHGEELLFVTEKGIIVRTSA-DKISQQSRAATGVRLQRLD 842

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            GD +  + +V       D+    ++ + ++   
Sbjct: 843 SGDHLSEVVLVPPEQEVQDDDSPGVEEIQSENNA 876


>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii]
          Length = 857

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 547/899 (60%), Gaps = 87/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE +   ++ IV+ E+PYQVNKA ++E+IA+L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-SKSKKDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N + A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q +AIL++RL RLTGL RD +  E   L I I +   IL
Sbjct: 414 ---------------FGLSAIQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  IIK+EL  +K++   PRRT I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEDRLNEIIKEELNEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + + + +   + F TK+G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTSDFDEAKS---LTFFTKNGIVKRTSLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +        +++ T LGQC+RF +   R   GR++ GVR I   
Sbjct: 636 GVRAIVLDDDDEIVTAKIATVDTKYLMVFTSLGQCIRFEVDKARE-QGRSTRGVRAIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   I+   D +                                          
Sbjct: 695 IDSDIVVDAEIIDSEDQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTVSEKG GKRT+  ++R++NR+G G+ A  +S   + G ++    V+D
Sbjct: 713 ----------ILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
              ++L++  G +IRV +  IR A R T GV+I +  KD++VVS+ +  + +   E + 
Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAKCPKEDEEIELDE 819


>gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 828

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/897 (40%), Positives = 533/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ A+YD+L R+ QD+S+R  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K TVDF  N+D S +EP VL +  PN+L NG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E+VDG +A+I NP++++  LM+ +  PDFPTG +I G  G++NAY TGRG +VIR
Sbjct: 182 PQNLREIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIYGYEGVRNAYMTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  ++  ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMIYYIKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L+ A  RAH+L GL I + NLDEV+  IR SP+  TA+ +LM+R          
Sbjct: 362 RRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E       I+    I
Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDMEYTETLALIEALKFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LSS  + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LSSPEKQMEIIREELLKVREVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G +G   + +DF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGQGVTGAQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+AL NI+ L  GE+I   +     +      ++V AT +G V++  L DF    R
Sbjct: 576 RAARGRALANIMELQPGEKIRAYINIRNFDE---PGFIVMATTNGIVKKTPLDDFSHPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE+L       E+ I+L    G  VRF  + IR    R ++GV+GI+L 
Sbjct: 633 NGLAAITIEEHDELLDARLTDGEHQIILAKSSGFVVRFAEAEIRSMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 EGEKCISMVTTKRFD--------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  +IGALV +  VND+
Sbjct: 707 -------TALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KIGALVGLLDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++  G + R  V++IR+  R T GV +      + + ++ R+ +S+   +++
Sbjct: 758 DDLIIITTHGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALARVPKSDDEGDSD 814


>gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 919

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/917 (41%), Positives = 535/917 (58%), Gaps = 84/917 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M  +G   N+ Y K 
Sbjct: 23  ELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKS 82

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R
Sbjct: 83  ARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVR 142

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL D+ K+TVDF PNYD S  EP+V+  ++PN+LVNG  GIAVGM TNIP HN
Sbjct: 143 MDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHN 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GEV+DG + +ID+P   +  LM+ I GPDFPT A I GR GI  AY TGRG I IR  +
Sbjct: 203 MGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATITGREGIARAYETGRGQITIRART 262

Query: 255 HIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE    GDRE I++TEIPYQVNKA ++EKIA+LVREK++  I+D+RDESDRQG R+ IE
Sbjct: 263 EIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIE 322

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A + V+LN L+  T L++ F   M+A++G +P    L  +L  F++ R +V+ RRT
Sbjct: 323 LKRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRTLNLKELLDRFISHRRDVITRRT 382

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL----------MQRSWN 423
           +Y L KA  R H++ GL +A   +D VV +IR S +P+ AR  L           +R  N
Sbjct: 383 RYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERFGN 442

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTM-------------YLSEVQTRAILELRLARLTGLGR 470
              I               +                   SE+Q + ILE+RL RLTGL R
Sbjct: 443 LPRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGLQR 502

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           +++  EL +L  +I    DIL+  S LL +IK EL  ++      RRT I   + ++  E
Sbjct: 503 EELFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGDKRRTEITGEVSEITSE 562

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  EDMVVT+SH GYVKR PL+ YRAQ+RGG+G++G   +++DFVTDLF+ STH  ++
Sbjct: 563 DLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLFVASTHAFLM 622

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G +Y  KV ++P  S  +RGKA+IN++   + E++  ++   +      N +V F
Sbjct: 623 PITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRD---FPENRFVFF 679

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            TK G V+R  LS F  +  SG IA+ ++  DE+++V+      D+LL+T  G  +RFP 
Sbjct: 680 VTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVKITDGSKDVLLSTAQGMSIRFPE 739

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R    R + GV+GI+L  GD+V+   +V                          D  
Sbjct: 740 EEVRSMG-RQAYGVKGITLVDGDEVVGADVV------------------------EKDAT 774

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +T  +N        +E R Q               G G      D + + R+GK +   
Sbjct: 775 ILTVTENGYGKRTQEAEYRVQ------------GRGGKG----IIDIKTTERNGKVVGLV 818

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-E 889
            V                D D+++LV++ G LIR+   EI +  R T+GV + +     E
Sbjct: 819 QVK---------------DADEVLLVTNGGMLIRMKAREISVIGRNTQGVRLIALENGTE 863

Query: 890 RVVSVERIRESEIVDEA 906
           +V  + ++ ES    E 
Sbjct: 864 KVTGISKLPESSNESED 880



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 104/271 (38%), Gaps = 15/271 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E L  +           V  V+  G VKR  LS +   R    G   + + + D +  + 
Sbjct: 660 EKLAQVLVTRDFPENRFVFFVTKKGVVKRTDLSAFANVRVS--GIIALGIEEGDELVAVK 717

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      VL  ++ G   +     +     QA G   +  ++L  G+ +       +D  
Sbjct: 718 ITDGSKDVLLSTAQGMSIRFPEEEVRSMGRQAYG---VKGITLVDGDEVVGADVVEKD-- 772

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
                 ++  T++G  +R + +++    R GK  + + +     +++ +      +++LL
Sbjct: 773 ----ATILTVTENGYGKRTQEAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADEVLL 828

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R     I V   RN+ GVR I+L  G + ++    L   ++  E     +  
Sbjct: 829 VTNGGMLIRMKAREISVIG-RNTQGVRLIALENGTEKVTGISKLPESSNESEDTLEGEAA 887

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             + + ++  +EE  +  +  +  G    E 
Sbjct: 888 GGEPQALAESSEEPPAEPSGEAESGGDPSEE 918


>gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
 gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
          Length = 876

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/912 (38%), Positives = 517/912 (56%), Gaps = 100/912 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD   + L+E     I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMN---------- 450

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + EVQ  AIL ++L RL  L R  I +E   L I+I +  D
Sbjct: 451 ----------------LLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDVA---KYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQT 731

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   +GD+++ M +V    +                                   
Sbjct: 732 AGVQGMRFREGDELLDMDVVAAETS----------------------------------- 756

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 757 ----------------KDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGSL 798

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + DQ++ +   G +IR  +NE++   R T+GV +    K + ++S+ R  E++
Sbjct: 799 VGALIVEETDQVMAIMKSGKVIRSDINEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858

Query: 902 IV----DEAEST 909
                 +E E+T
Sbjct: 859 DEENQLEEKEAT 870


>gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1]
          Length = 837

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/898 (38%), Positives = 539/898 (60%), Gaps = 86/898 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+ + K AR
Sbjct: 5   QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+YDA+ RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 65  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   + D+ K+TVDFRPNYD +  EPVVL  R PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ +  + ++D+    +D LM+ ++GPDFPTG  +    G+ +AY TGRG++ +RG   I
Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEI 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+     + IV+ EIPY +NK++++EKIA LV E+RI  +ADLRDESDR+G RVVI+LKR
Sbjct: 245 EERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKR 304

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D+++N LY+YT L+S + +NM+A+   +P+   L   L  F+  R E+++RRT+Y 
Sbjct: 305 GTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYD 364

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LMQR                
Sbjct: 365 LRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR---------------- 408

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q++AIL++RL RLT L  + + +E   L  +I+    IL +   
Sbjct: 409 ----------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEV 458

Query: 497 LLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  ++++E   ++D   T RRT  +++ L  +  ED I  +D+V+T+S  GY+KR  L  
Sbjct: 459 LRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDN 518

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +G+   D+DFV +    + H  +L F++ G +++ KV ++  GS  A+G
Sbjct: 519 YQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKG 578

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N+L L + E +TT++   E      + + +F TK G V+R+  S + +  + G IA
Sbjct: 579 VHIANLLPLEKDEWVTTVLSVREFAE---DRFFLFVTKRGMVKRSSASLYARARKGGLIA 635

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     ++ ++LTT  G  +RF    +R    R++ GV+G++L+  D+V
Sbjct: 636 VGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMG-RSATGVKGVALSGDDRV 694

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++ A++   D   +                                              
Sbjct: 695 VACAVLPGDDTSTE---------------------------------------------- 708

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I+++S  G+GKRT    +R+ +R GKG++   V+   + G ++   PV D++ ++L
Sbjct: 709 ----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALVL 762

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE---AESTE 910
           ++    +IR+ V+E+R   RAT GV++    +   VV  +R+ E E+V+E   A+S+E
Sbjct: 763 LTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 820



 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 93/257 (36%), Gaps = 14/257 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +   + V+  G VKR   S+Y   R+G  G   V +RD+D +  + 
Sbjct: 591 EWVTTVLSVREFAEDRFFLFVTKRGMVKRSSASLYARARKG--GLIAVGLRDDDELIMVR 648

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            +     V+  +  G   +     +      A G   +  ++L+  +R+      P D++
Sbjct: 649 EIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATG---VKGVALSGDDRVVACAVLPGDDT 705

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDIL 697
           S     ++  + +G  +R ++  +   +R GK          + D ++       +  ++
Sbjct: 706 STE---IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALV 761

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L T   + +R  +  +R    R ++GV  + L +G  V+    V   +   +        
Sbjct: 762 LLTSTNKIIRMSVDEVRSVG-RATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 820

Query: 758 MSAQRRLISGDTEEITS 774
                      TE    
Sbjct: 821 QKTAPEGGDAGTEGTAG 837


>gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
 gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
          Length = 868

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/845 (42%), Positives = 525/845 (62%), Gaps = 37/845 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+     R
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKSEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L +G  VI++ +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLDEGQNVIALLVAGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGR 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + ++  Q        I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVDQEAQ--------IMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAV 844
            L  V
Sbjct: 829 GLQQV 833


>gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A
 gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 847

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/895 (41%), Positives = 540/895 (60%), Gaps = 68/895 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  + I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK 
Sbjct: 3   EVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKT 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +LI+GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A+ LL+DL K+TV F  NYDG+ + P VL A+ PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EV++GC+A ID+ +I L  LME I GPDFPT  +I G+ GI+ AY TG+G I I
Sbjct: 183 PPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKIYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  S IE +    ++ I++ E+PYQVNKA +++ IA LV+EK+I  I  LRDESD++G R
Sbjct: 243 RAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+   A++ILNQLY  T L+  F +NMVAL   +P+  TL  IL AF+  R +++
Sbjct: 303 IVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRKII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ + LNK R + H+L GL I++ N+D ++ +I+ S   E A+ +L    W +   + 
Sbjct: 363 MRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQY 422

Query: 430 LIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              L          D           +L+  Q +AILELRL +LT L    + +E   L 
Sbjct: 423 TQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQLF 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
                  +IL + + L  I+K EL+ ++D     RRT+I     D+   D I +E++V+T
Sbjct: 483 KTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVVIT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GYVK   LS Y AQ+RGGKG+  V  ++EDF+ +L + +TH  +L FSS G +Y  
Sbjct: 543 LSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYWM 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L+  ERIT I+P  E + S N   +  AT  G V++  
Sbjct: 603 KVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSIN---IFMATSKGMVKKTS 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +    G IA+ L + DE++ V      N I+L T  G+ V F    +R   GR +
Sbjct: 660 LYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVR-KTGRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +GV+GI + K D+V+S+ +                                         
Sbjct: 719 IGVQGIKIKKSDKVVSLVV----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         K   IL ++E G+GKRT  ++F I +R+ +G  A  ++K N  G +
Sbjct: 738 ------------PKKHGNILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN--GIV 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +    V + DQII++++ GTL+R  V EI I  R T+GV+I  T+K E+VV++++
Sbjct: 784 IGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQK 838



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTV 803
             +     +K+ +   +++  +  +I     D   + +  N S+    +L  KE  ++T+
Sbjct: 484 TSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVVITL 543

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S  G+ K      +    R GKG  A    + + I  L+     N +D I+  S KG L 
Sbjct: 544 SYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVA---NTHDIILCFSSKGILY 600

Query: 864 RVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            + V ++  ASR  +G   V +   + +ER+ ++  I E
Sbjct: 601 WMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISE 639


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  744 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/840 (43%), Positives = 525/840 (62%), Gaps = 34/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQNPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A I GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEVVD  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A++ VILN LY++T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM++         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G+ + +DED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVIGGIEEFDDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG  +IN+L L++ E I TI+P        +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTARGIPIINLLELDKDEWINTIIPINN--EFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+       I++ TK G  +RFP + +R    R++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTMG-RSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+    D     +  Y K   A    I     +     N +   G++  
Sbjct: 694 LEDGDEVVGMEILEDDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +       E+ ++ ++  G   R +  D     R+ +G++   +S  +E   +  V  V
Sbjct: 754 VKTV---TGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKV 810


>gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 880

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/887 (39%), Positives = 527/887 (59%), Gaps = 84/887 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE K      I+ EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K 
Sbjct: 3   EEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ K+TVDF PNYDG  +EP VL +R+PN+LVNG  GIAVGM TNI
Sbjct: 123 TEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     ++ NP      LME + GPDFPT  +++G+ GIK AY TG+G I++
Sbjct: 183 PPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVIGKAGIKKAYETGKGRIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+  +  +E+I+V+EIPY VNKA ++E+IA+L R+KRI  I  +RDE+ RQG R+
Sbjct: 243 RARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE ++ ASA VILN L++ T +Q+ F+ NMVA++   P+  +L  IL+ ++  +EE++ 
Sbjct: 303 VIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQGVPKTLSLKQILRRYLDHQEEIIR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   KA  RAH+L GL IA+ ++DE+V I+R S   + A+   M +          
Sbjct: 363 RRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQ---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AIL++RL RLTGL R+ I NE   L  EI    ++
Sbjct: 413 ----------------YGLSDKQAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEV 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+S  +   II QELL ++      RRT I V  + ++EDED I   ++++T+S  GY+K
Sbjct: 457 LASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV  S YR Q RGG+G  G+ ++D D +  +   STH  +L F+  G V++ K + +P  
Sbjct: 517 RVEDSEYRTQNRGGRGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEY 576

Query: 610 SPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              A+G  ++N+L+L + E++  ++   P D+ + +  Y  F TK G V+R  + ++  I
Sbjct: 577 GRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNI 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V   + E++I+L +  G  V F    +R    R + GVRGI 
Sbjct: 637 RNNGLIAINLRDDDELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSMG-RTATGVRGIR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  +I+                                               
Sbjct: 696 LDQDDYVVGASILGP--------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +Q +L V+EKG+GKRT + ++ I +R GKG++  ++++ N  G LV +  V+
Sbjct: 711 --------DQDVLIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKN--GPLVGLATVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L++D+G +IR    +I    RAT+GV +    +   V ++ 
Sbjct: 761 LDEDIMLMTDEGVVIRFHSVDISQTGRATQGVRLMRLDEAAHVSTMA 807



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 101/251 (40%), Gaps = 34/251 (13%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD  DEI++         IL ++K G   +         + + +  +  + L    
Sbjct: 382 LQIALDHIDEIVN---------ILRSSKTGDQAKTIFMDQYGLSDKQAQAILDMRL---- 428

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             + +  +     D + +    +       L S +       +    +E    +ER  E+
Sbjct: 429 --VRLTGLEREKIDNEHKDLMAEIAYLNEVLASEEKRYEIIYQELLEIEKRFGDERRTEI 486

Query: 794 KLKE-------------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           ++ E               ++T+S KG+ KR    ++R  NR G+G++   +   +    
Sbjct: 487 RVGEITNLEDEDLIEESNVLITLSRKGYIKRVEDSEYRTQNRGGRGVKGMALQDGD---H 543

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           + A+   + +D I+  +D+G + ++   EI    RA KG   V + +  +DE+V  V  +
Sbjct: 544 IDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEYGRAAKGLPIVNLLNLQEDEQVRGVINV 603

Query: 898 RESEIVDEAES 908
             S+   ++E 
Sbjct: 604 TPSDKETDSED 614



 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 15/269 (5%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED    V+  G VKR P+  Y   R    G   + +RD+D +  +   S   +++  S  
Sbjct: 613 EDYFFFVTKQGTVKRTPVEEYFNIR--NNGLIAINLRDDDELVAVLQTSGEDNIILGSHQ 670

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+        +      A G   +  + L+Q + +        D+       V+  T+ G
Sbjct: 671 GYAVSFAEDDVRSMGRTATG---VRGIRLDQDDYVVGASILGPDQD------VLIVTEKG 721

Query: 656 NVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R    ++   +R GK        +    ++ + T   + DI+L T  G  +RF    
Sbjct: 722 YGKRTPADEYSIKHRGGKGVKTVNITEKNGPLVGLATVDLDEDIMLMTDEGVVIRFHSVD 781

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           I    GR + GVR + L +   V +MA+V   + D +E +        Q    +G ++  
Sbjct: 782 ISQ-TGRATQGVRLMRLDEAAHVSTMAVVDPEEVDEEEVVASDPEQRGQYATETGLSDPD 840

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFIL 801
               +D++ +    E+   +++     +L
Sbjct: 841 IDSGDDNAPDRLSQEQIRDKMQDFSSQVL 869


>gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 908

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/877 (43%), Positives = 526/877 (59%), Gaps = 50/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  
Sbjct: 186 NINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIE-EENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 305 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+   W    +K +++ 
Sbjct: 365 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEK 424

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 425 AGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIA 484

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V       RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 485 ALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 544

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 545 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 604

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L +GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 605 LPLASRTARGRPIVNLLPLAEGERITAILPVREYAE---DKYIIMATSHGTVKKTALTAY 661

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
                +G IA+ L   D+++ V+     NDI+L +  G+ VRF   A             
Sbjct: 662 SNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721

Query: 717 ----------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSA 760
                      GR + GVRGI L  G  V+S+ +      +L    +   +   +    A
Sbjct: 722 TGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPKGEGDILTVTENGYGKRTDLAEYPA 781

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           + R   G      S +N + V      E           I+ +S KG   RT +      
Sbjct: 782 KSRGTKGVVSIKVSERNGAVVGAVQVGE--------NDEIMLISNKGTLVRTPATGVSSI 833

Query: 821 NRSGKGIRATDVSKINEIGAL-----VAVFPVNDNDQ 852
            R+ +G+     ++  ++  L     + V  V  +++
Sbjct: 834 GRNTQGVTIIRTAEDEKVVGLQRIDEIQVPEVELDEE 870



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 109/294 (37%), Gaps = 40/294 (13%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  ++  +  G VK+  L+ Y   R    G   V ++D D +  + 
Sbjct: 627 ERITAILPVREYAEDKYIIMATSHGTVKKTALTAYSNPR--ANGIIAVNLKDGDQLIGVD 684

Query: 582 IVSTHTSVLFFSSLGFVYKEK--------------------VWRLPIGSPQARGKALINI 621
           I   +  ++ FS+ G V +                      V  L      A G   +  
Sbjct: 685 ITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATG---VRG 741

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLD 679
           + L  G+ + +++             ++  T++G  +R  L+++   +R   G +++K+ 
Sbjct: 742 IKLEDGQTVVSLIV------PKGEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVS 795

Query: 680 S-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
                ++      + ++I+L +  G  VR P + +     RN+ GV  I  A+ ++V+ +
Sbjct: 796 ERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIG-RNTQGVTIIRTAEDEKVVGL 854

Query: 739 -----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                  V   + D +     ++  +           + ++ + +S+      +
Sbjct: 855 QRIDEIQVPEVELDEEGNPIIVEGAAETEGQTEAANTDASNTEGESTETPKTED 908


>gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 809

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/894 (39%), Positives = 560/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I++TE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++E++
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+QR         
Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++VQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FKFTDVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ VVT++H GY+
Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVVTLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R++DFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ +++ E+IT  M   + +      Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQISKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV   R + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVMG-RLAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD ++ M       +D    +C  ++   +R  I                       
Sbjct: 691 LEEGDFIVGM----EKASDGKYLLCVTENGFGKRSEIE---------------------- 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                      ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 725 ---------------------------EYRKTKRGAKGVLTYKVT--DKTGKIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I++ S +G  IR+ ++++ +  R T+GV +     ++ RV S+ RI+  E
Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIRVSSIARIKAEE 809


>gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 879

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/909 (38%), Positives = 513/909 (56%), Gaps = 96/909 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD     L+E     I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + +TAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMN---------- 450

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I++  D
Sbjct: 451 ----------------LLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  + +    Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDVA---KYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           + G IA++L       +  DE++    C  E+DI+L +KLG  ++F     ++   GR +
Sbjct: 672 QGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQT 731

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+G+   + D+++ M +V    +                                   
Sbjct: 732 AGVQGMRFREDDELLDMDVVSVETS----------------------------------- 756

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+L
Sbjct: 757 ----------------KDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGSL 798

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E +
Sbjct: 799 VGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEERD 858

Query: 902 IVDEAESTE 910
              + ++ E
Sbjct: 859 DESDNKNEE 867



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 99/251 (39%), Gaps = 14/251 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  +           +V  +  G VK+  L  Y + R+GG     ++  +E     D 
Sbjct: 633 ETIQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADE 692

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    + ++   ++  S LG   K +        P  R  A +  +   + + +  +   
Sbjct: 693 LIGAALCNSEDDIILVSKLGMSLKFRADD-EQLRPMGRQTAGVQGMRFREDDELLDMDVV 751

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
             + S      ++  T  G  +R  + ++    R+G   K     + R  ++      + 
Sbjct: 752 SVETSKD----LLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEET 807

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + ++   K G+ +R  ++ ++   GR + GV      KGD++IS+A     D + D +  
Sbjct: 808 DQVMAIMKSGKVIRSDVNEVK-RTGRTTQGVTLAKPDKGDEIISIARNEERDDESDNKNE 866

Query: 754 YMKHMSAQRRL 764
            ++  +++R L
Sbjct: 867 EVEENTSRRNL 877


>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 842

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/909 (40%), Positives = 537/909 (59%), Gaps = 77/909 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD E    I S  +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   SDNESTARIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVD DPPAA
Sbjct: 62  DRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAA 121

Query: 128 ERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL       LL D+  +TVDF  NYDGS QEP+VL AR P +L+NG  GIAVGM
Sbjct: 122 MRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E+VDG +A+I NP++    LM+ I  PDFPTGA+I+G+ GI+ AY TGR 
Sbjct: 182 ATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIMGQEGIREAYTTGRS 241

Query: 247 SIVIRGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ +E         R+ I++TE+PYQ NKAAM+EKIAELV EK++  IAD+RDE
Sbjct: 242 SITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RVVIELKR A   V+LN LY+ T LQ+ F VNM+A+   +P   TL   L+AF+
Sbjct: 302 SDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGEPRTLTLRDALQAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEV+ RRT+Y L KA +R H+L G  +A+  LD V+ +IR + +  TAR EL     
Sbjct: 362 DFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREELQA--- 418

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + LSE Q   IL+++L RLT L  + I+ E   L  
Sbjct: 419 -----------------------VLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVR 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL+ R R++ II +EL  +K    +PRR+R+     ++  +D I   + V+ +
Sbjct: 456 QIADLRDILARRERVMQIISEELQQLKARFASPRRSRLCLEDGELGTDDLIENRETVIFL 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+ L  ++ Q R  +G++G  ++++D +   F   +H ++LFF++ G VY   
Sbjct: 516 TEQGYIKRMGLEEFQVQGRATRGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLP 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++P GS  ARG A++ +L + + ER+T+++P        ++ Y+V  T+ G +++  L
Sbjct: 576 AHQIPQGSRAARGSAIVQLLPITREERVTSMVPVS---QFSDDEYLVMLTRGGYIKKTAL 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNS 721
           S F  +  +G IA+ L+  DE+  V      +D+++ T+ G  +RFP    ++   GR +
Sbjct: 633 SAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMSIRFPADDEQLRPLGRAT 692

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVR I+L  GD ++SM I+        ER                              
Sbjct: 693 RGVRAITLNAGDDIVSMDIISAESVMAAER------------------------------ 722

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                    +  KL   ++L ++++G GKR++  +FR  NR GKG+ AT          L
Sbjct: 723 ---------EGEKLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKF--RQASDEL 771

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            A+  VN  D+I+LV+ +G ++R     I   SR   GV++     ++ +V V  +  + 
Sbjct: 772 AALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPAAL 831

Query: 902 IVDEAESTE 910
           + +E E++E
Sbjct: 832 VAEE-ETSE 839


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/894 (39%), Positives = 559/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++E++
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+QR         
Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +++Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTDIQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I++    D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R++DFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   + +      Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV   R++ GV+G++
Sbjct: 632 TRAGKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVMG-RSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M       +D    +C  ++   +R  I                       
Sbjct: 691 LEDGDFIVGM----EKASDGKYLLCVTENGFGKRSEIE---------------------- 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                      ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 725 ---------------------------EYRKTKRGAKGVLTYRVT--DKTGKIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I++ S +G  IR+ ++++ +  R T+GV +     ++ +V S+ RI+  E
Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIKVSSIARIKAEE 809


>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
 gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
          Length = 868

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/882 (40%), Positives = 531/882 (60%), Gaps = 85/882 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K Y K 
Sbjct: 13  KVIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYENGIFPDKAYRKS 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A   G V+G+YHPHG+A++YDAL RMAQD+SLR  L++G GNFGSVDGDPPAA RYTE +
Sbjct: 73  ADTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAK 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K +  +L D+ K+TV+F  NYD   +EP+VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 133 MSKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D    +IDNPD +L  +M  I+GPDFPT  +I+G++GI+ AYATGRG I +R  +
Sbjct: 193 LREVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIMGQSGIRAAYATGRGKIQVRARA 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+ +  R +IVVTE+PYQVNKA ++E IA  V++KRI  I+ LRDES+R+G R+VIEL
Sbjct: 253 EIEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRDESNREGMRIVIEL 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+  +ILN+LY +T +Q  F V  +AL    P+  TL  +L+ ++ F+ EV+ +RT+
Sbjct: 313 KRDANPQIILNKLYSFTQMQETFGVINLALVNGVPKVMTLKEMLEHYIEFQSEVIRKRTE 372

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+R H+L GL IA+  +DEV++ IR S     ++  L++R              
Sbjct: 373 YDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER-------------- 418

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E+Q  AI+++RL +L+GL R  I  EL  L  +IKE   IL   
Sbjct: 419 ------------FGLDELQADAIVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDD 466

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +L I+++EL +++D+    RRT I+    +++ ED I  ED VVT++H GY+KR P  
Sbjct: 467 ALILVIVREELAAIRDKFGDERRTEILAVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTD 526

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +Y+ Q+RGG+G +G+  R+EDF  +LFI STH +VLF ++ G +YK K + +P G   ++
Sbjct: 527 IYKTQKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSK 586

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L +   E++T+++   + +    + Y+V  TK G ++R  L  +  + ++G I
Sbjct: 587 GTNIVNLLPIEGDEKVTSMIRITDFD---PDQYLVMVTKSGMIKRTVLDAYKNVRKNGLI 643

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+  V      + +++ T+ G  +RF  +  R  + R++ GVR I L   D 
Sbjct: 644 AISLLEGDELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLS-RSAKGVRAIKLRGDD- 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                  +    RL  G T                         
Sbjct: 702 ----------------------EVVGMARLREGAT------------------------- 714

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ++TV+++G G+RT   D+RI  R G G     VS  +E G +VAV  V+++D +I
Sbjct: 715 -----VMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVS--DEKGHVVAVKVVDEDDDLI 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           L+S+ G +IR+ V+++ + SR   GV +     D RVV+  R
Sbjct: 768 LISNDGVIIRIRVSDVNVMSRYAGGVKVMRVQGDARVVTFAR 809



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 160/422 (37%), Gaps = 29/422 (6%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL K ++   +L   A+ +  + E +  IR     +  R E++  S    DI+DLI   D
Sbjct: 452 LLEKIKEYETILGDDALILVIVREELAAIRD-KFGDERRTEILAVSGEV-DIEDLIPEED 509

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                + +       + Q   I + +     G+     R E  +  + I    D +   +
Sbjct: 510 ----CVVTLTHYGYIKRQPTDIYKTQKRGGRGVAGMKQREEDFAEELFIASTHDNVLFIT 565

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGY 547
               + K +   + +   T + T IV        E +  M        +  +V V+  G 
Sbjct: 566 NRGRMYKLKCYEIPEGGRTSKGTNIVNLLPIEGDEKVTSMIRITDFDPDQYLVMVTKSGM 625

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  Y+  R+   G   + + + D +  + + + ++ ++  +  G   +       
Sbjct: 626 IKRTVLDAYKNVRK--NGLIAISLLEGDELAWVRLTNGNSQLIVATRNGMAIRFDENDAR 683

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G   +  + L   + +  +    E         V+  T  G  RR K+ D+  
Sbjct: 684 PLSRSAKG---VRAIKLRGDDEVVGMARLRE------GATVMTVTDRGLGRRTKIEDYRI 734

Query: 668 INRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             R G   +     DE   +++V+   +++D++L +  G  +R  +S + V + R + GV
Sbjct: 735 QTRGGYGKINYHVSDEKGHVVAVKVVDEDDDLILISNDGVIIRIRVSDVNVMS-RYAGGV 793

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + +    +V++ A   H + +    +   +        I+    + + +    + +  
Sbjct: 794 KVMRVQGDARVVTFARADHEEEEEIAEVETAEESEPTSEEIAELQAQESEIDASEAADEL 853

Query: 785 IS 786
           I 
Sbjct: 854 IE 855



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 95/249 (38%), Gaps = 6/249 (2%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R +        R   +     + D I  V    + +  +  +K     RF +  ++  A
Sbjct: 369 KRTEYDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIERFGLDELQADA 428

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                  +   L +      +A +L    +Y+  +     +    R       +    + 
Sbjct: 429 IVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDDALILVIVREELAAIRDKFGDER 488

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            + +     E   ++L  +E  ++T++  G+ KR  +  ++   R G+G+      + + 
Sbjct: 489 RTEILAVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTDIYKTQKRGGRGVAGMKQREEDF 548

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSV 894
              L   F  + +D ++ ++++G + ++   EI    R +KG  I +      DE+V S+
Sbjct: 549 AEEL---FIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSKGTNIVNLLPIEGDEKVTSM 605

Query: 895 ERIRESEIV 903
            RI + +  
Sbjct: 606 IRITDFDPD 614


>gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
 gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
          Length = 885

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/935 (37%), Positives = 518/935 (55%), Gaps = 112/935 (11%)

Query: 1   MTEHIISSDEEE----------------EKGITSVSITDEMQNSYLTYAINVILGRAIPD 44
           MT+   + DE +                   +  V +  EMQ SYL YA++VI+GRA+P+
Sbjct: 1   MTQPPETPDERDAETTDAVVSAAGASALRDRVEQVDLQLEMQRSYLDYAMSVIVGRALPE 60

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M   G   +  + KCAR+ G+VMG YHPHG+ AIYDAL R+ Q W
Sbjct: 61  VRDGLKPVHRRVLYAMFDGGYRPDSAFSKCARVVGDVMGNYHPHGDTAIYDALVRLVQPW 120

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S+R  L+ GQGNFGS   D  AA RYTEC++   A  ++ D+ KDTVDF  NYDG  QEP
Sbjct: 121 SMRYPLVAGQGNFGSPGDDSAAAPRYTECKMAPLAMEMVRDIDKDTVDFGDNYDGRTQEP 180

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----II 220
           ++L AR+PN+LVNG  GIAVGMATNIP HNL EV +G    +++PD   + L+      I
Sbjct: 181 LILPARFPNLLVNGSAGIAVGMATNIPPHNLREVAEGVEWFLEHPDATNEELLGALLLRI 240

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
           +GPDFPTGA ILG  GI++AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   +
Sbjct: 241 KGPDFPTGAQILGHRGIEDAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDRL 299

Query: 281 LEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
             KI E+VRE RI  IADLRDE+  R G R+VI LKR A A V+LN LY++T LQ  F  
Sbjct: 300 AAKIGEMVREGRISGIADLRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGA 359

Query: 340 NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           NM+AL    P   +L   ++ +   + +V+VRRT+YLL +   R H+L GL  A+  LDE
Sbjct: 360 NMLALVDGVPRTLSLDAFVRHWTMHQIDVIVRRTRYLLAEDERRIHILRGLLKALNALDE 419

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           V+ +IR SP+ + AR  LM+                           + + EVQ  AIL+
Sbjct: 420 VIALIRRSPSSDEARTGLME--------------------------LLEIDEVQATAILD 453

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           ++L RL  L +  I +E  ++   I +  DIL+S  R   I++ EL ++ +     RRT 
Sbjct: 454 MQLRRLAALEQQRIMDEHAAIEARILDYQDILASEERQRSIVRSELGAIVERYGDERRTT 513

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I+    +M  ED I  ED+VVT++  GY KR     YRAQRRGGKG  G  +R++D V  
Sbjct: 514 ILPFDGEMSVEDLIPEEDVVVTITRGGYAKRTRTDNYRAQRRGGKGVRGAQLREDDVVDH 573

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F+ +TH  +LFF++LG VY+ K + LP G   A+G+ + N+L+   GE+I  ++   + 
Sbjct: 574 FFVTTTHHWLLFFTNLGRVYRAKGYELPEGGRDAKGQHVANLLAFQPGEKIAQVLALRDY 633

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQEN 694
           + +    Y+V ATK G V++ +L+++      G IA+ L +      DE++S      E+
Sbjct: 634 DQAD---YLVLATKRGLVKKTRLAEYDSSRTGGVIAINLRTDDGGAVDEVVSARIVGAED 690

Query: 695 DILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           D+LL ++ GQ +RF  +   +    R + GV G+     D++++M +V   DAD      
Sbjct: 691 DLLLVSRKGQSIRFTATDEALRPMARATSGVTGMKFRADDELLAMDVV-ETDAD------ 743

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                         +  V+E GF KRT+
Sbjct: 744 ----------------------------------------------LFVVTEGGFAKRTA 757

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             ++R+  R G GI+  ++ +    G LV    V+ +D+++++ ++G ++R  V+E+   
Sbjct: 758 LGEYRVQGRGGLGIKVANLVEA--RGDLVGALVVDSDDEVLVIMERGKIVRSAVDEVTRT 815

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            R T+GV        +R++++    E  + D  E 
Sbjct: 816 GRNTQGVTFAKPDAGDRIIAIALGEERAVADAGEE 850



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 95/262 (36%), Gaps = 14/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +       + D +V  +  G VK+  L+ Y + R GG     +   D    D V 
Sbjct: 622 EKIAQVLALRDYDQADYLVLATKRGLVKKTRLAEYDSSRTGGVIAINLRTDDGGAVDEVV 681

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              IV     +L  S  G   +       +  P AR  + +  +     + +  +     
Sbjct: 682 SARIVGAEDDLLLVSRKGQSIRFTATDEAL-RPMARATSGVTGMKFRADDELLAMDVVET 740

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           D        +   T+ G  +R  L ++    R G   K+A  +++R +++       +++
Sbjct: 741 DAD------LFVVTEGGFAKRTALGEYRVQGRGGLGIKVANLVEARGDLVGALVVDSDDE 794

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L+  + G+ VR  +  +    GRN+ GV       GD++I++A+               
Sbjct: 795 VLVIMERGKIVRSAVDEV-TRTGRNTQGVTFAKPDAGDRIIAIALGEERAVADAGEEPVE 853

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           +           + + + S   
Sbjct: 854 ESAEGAPTTDPAEGDGVPSSPE 875


>gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
 gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
          Length = 850

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/907 (39%), Positives = 538/907 (59%), Gaps = 98/907 (10%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++      EE     + I    +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSKKPQYDPEEIRYPNQHIEVSPLVPEMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M +  +  +K + K A   G+V+G+YHPHG+A++YDAL R+AQD+S+R +L++G GNF
Sbjct: 61  YAMYEDNLTADKPFKKSATCVGDVLGRYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGDPPAA RYTE RL K +  +L D+ KDTVD+ PN+D + +EP VL +R+PN+LVN
Sbjct: 121 GSIDGDPPAAYRYTEARLSKISDEMLRDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNL EV++  + V+DNP+ +L  LME I+GPDFPT  +I+GR+GI
Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINATICVLDNPEAELCDLMEHIKGPDFPTKGIIMGRSGI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AYATGRG + +R  +  E+   DR +I+VTEIPYQVNK  +++ +A+ V +KR+  I+
Sbjct: 241 RAAYATGRGRLCVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPERFT 353
           D+RDESDR G R+VIELKR A+  V+LN+L+  T LQ+ F++NM+AL       +P   +
Sbjct: 301 DIRDESDRNGMRIVIELKRDANPQVVLNRLFAQTQLQTTFAINMLALVEVNGKLQPRILS 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++A++E+V++RRTKY L KA++RAH+L GL IA  N+DEV+ IIR   +   A
Sbjct: 361 LRHILDEYIAYQEQVIIRRTKYDLKKAQERAHLLEGLLIAQDNIDEVIHIIRSRYD--DA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +LM+R                            L +VQ +AIL++RL  L GL R+ +
Sbjct: 419 KEKLMER--------------------------FSLDDVQAQAILDMRLKALQGLDREKL 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            NE   L   I     +L S   L G++K EL++++D+    R T I +   +++ ED I
Sbjct: 453 ENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKYGDERVTEIQDVEDEIDIEDLI 512

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E+ V T++  GY+KR+P S Y+ QRRGGKG + +  ++ED+V  +F  STH  +LFF+
Sbjct: 513 EEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDTVFTASTHDFILFFT 572

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V+++K +++P     A+G  L+NIL +  GE++T ++   E      + Y+   T+
Sbjct: 573 NKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLRE---FPEDRYLAMVTR 629

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V+R +LS      ++G   + LD  DE+++V     +  IL+ T  G  + F  + +
Sbjct: 630 NGTVKRIQLSAINTARKAGIRCITLDEGDELIAVRETDGDQAILIATHDGMSICFKETDV 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R++ GVRGI L +GD VI  A                                  
Sbjct: 690 RCMG-RDACGVRGIKLREGDYVIGAA---------------------------------- 714

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI----SNRSGKGIRA 829
                                     +L V+E G+GKRT   ++       NR G G++ 
Sbjct: 715 -------------------RAKAGHQVLMVTENGYGKRTDMDEYIRSDGPQNRGGYGLKG 755

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +V++  + G +V V  V+D D I++++D G +IR+ V+ I    RA +GV + +  +  
Sbjct: 756 YNVTE--KTGPVVGVKVVSDADDILVINDAGVIIRMAVSGISTYGRAAQGVKLMNLDEGV 813

Query: 890 RVVSVER 896
           +V+S  R
Sbjct: 814 KVISFAR 820


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/903 (40%), Positives = 536/903 (59%), Gaps = 88/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              E     V I++EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   NNNEGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCARI G+V+GKYHPHG++++YDAL R+AQD+S+R  L++G GNFGSVDGD  AA R
Sbjct: 62  PHRKCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ ++ D+ K+TVDF PNYDG  QEP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMDKMANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG   +I+NP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +V
Sbjct: 182 IPPHNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIMGKSGIREAYETGRGKVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R
Sbjct: 242 VRANATIE-EDGGRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ +VILNQLY++T LQ  F + M+AL   +P+   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNVILNQLYKHTKLQDSFGIIMLALVDNQPKVLNLKEVLVHYLNFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+DEV+ IIR S +   A+  L +R         
Sbjct: 361 TRRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQER--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q+ AI+E+RL  LTGL R  I +EL+ L   I +  +
Sbjct: 412 -----------------FALSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++ + +L II+ EL  +K      RRT I     D+  ED I    +VVT++  GY+K
Sbjct: 455 ILANEALILNIIRDELNEIKGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+  S Y AQ+RGGKG      +++D V ++F+ STH  +LFFS+ G VY  K + +P  
Sbjct: 515 RIAESTYSAQKRGGKGIQAATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L L   E+I  ++   E E S    Y+VF TK G +++  L DF  I 
Sbjct: 575 GRTAKGTNVINLLLLRPEEKIQAVITLSEFEKSQ---YLVFGTKKGIIKKTTLEDFSNIR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++SV   + E+ I++ T+ G  +RF    +R    R + GV+GISL
Sbjct: 632 KNGLNAVGLREDDELISVRLSSGEDQIIMVTQNGYSIRFKEEDVRPMG-RTATGVKGISL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+SM IV  +                         + +   +N       I E +
Sbjct: 691 RDEDNVVSMEIVDES------------------------MDILVVSENGYGKRTPIGEYK 726

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           CQ            +  G G  T    +++S ++GK + AT                VND
Sbjct: 727 CQ------------NRGGMGIIT----YKVSEKTGKVVAAT---------------MVND 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAE 907
             +I++++    +IR+   EI    R+  GV +     + +V+++ ++   + EI D  E
Sbjct: 756 EHEIMIINSADIVIRINSKEISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEEIEDLQE 815

Query: 908 STE 910
             E
Sbjct: 816 HNE 818


>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
 gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
          Length = 891

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 536/902 (59%), Gaps = 62/902 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+ + LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G +A+I+NP++D +ALM II GPDFPTG  ILGR+GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L +R     
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQER----- 428

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 429 ---------------------HGLSEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+ G+I++EL  ++D     RRT I++    ++D D I  E  VV ++  
Sbjct: 468 DYKDILGRRERVFGLIQEELTQLRDRYPIERRTEILDLAGGLDDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +GR+G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  ++ +L + + E IT+++      +  ++  ++  T+ G ++R +LS F
Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREELITSLLAVS---AFNDDTDLLMLTQGGYIKRTRLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
             I  +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +   GR + GV
Sbjct: 645 SNIRSNGLIAIGLEDGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGV 704

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R ++L +GD ++SM ++    AD   +              S D  E  +   D      
Sbjct: 705 RSMNLREGDALVSMDVLPVELADRVAQS-------------SDDGGEAEADAEDGPTAS- 750

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      +  ++L  S  G GKR     FR+  R+G G+RA      +++  LV +
Sbjct: 751 -----------EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDV--LVGL 797

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +  +   D
Sbjct: 798 RVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVLVPPAPEED 857

Query: 905 EA 906
           E 
Sbjct: 858 EE 859



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 90/258 (34%), Gaps = 18/258 (6%)

Query: 660 NKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +L D   I  R+  + +     D    ++    E  ++L T+ G   R P+S       
Sbjct: 488 TQLRDRYPIERRTEILDLAGGLDD----IDLIANERSVVLLTETGYLKRMPVSEFEA-TS 542

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADAD----YDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  G   ++G++ + + I  +         D  + Y        +           
Sbjct: 543 RGTRGRAGTR-SQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVV 601

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                  E  I+          +  +L +++ G+ KRT    F     +G          
Sbjct: 602 QLLPIPREELITSLLAVSAFNDDTDLLMLTQGGYIKRTRLSAFSNIRSNGLIAIGL---- 657

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVV 892
             +  AL  V      D +++ S  G  I  R+   E+R   R  +GV   +  + + +V
Sbjct: 658 -EDGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDALV 716

Query: 893 SVERIRESEIVDEAESTE 910
           S++ +        A+S++
Sbjct: 717 SMDVLPVELADRVAQSSD 734


>gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 867

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/911 (40%), Positives = 545/911 (59%), Gaps = 89/911 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+     ++    I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM
Sbjct: 1   MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSV
Sbjct: 57  HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A +DNPDI +  LM+ I+GPDFPTG  ILG TG++ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQILGITGLRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R    I   + +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLR
Sbjct: 237 YETGKGIIAVRAQHEI-VETKNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  
Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A + E++ RRT++ L KA  R H+L  L  A+ ++D V++II+ + NPE AR  L+  
Sbjct: 356 YIAHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIA- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    T   +E+Q R+IL ++L RLTGL  D I  E ++L
Sbjct: 415 -------------------------TYDFTEIQARSILTMQLQRLTGLEIDKIHEEADNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
             +I E   IL      + IIK EL  +KD+ D PR + + +   LD+++ED I  ED+V
Sbjct: 450 AHKITEYKQILGDEDLKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDIV 509

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV++ GY+KR+ L  Y+ Q RGG G SGV + D+DFV  + + STH   LFF++LG V+
Sbjct: 510 VTVTNNGYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVF 569

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + LP GS Q++G  ++N L+   GE++ +     + ++   + Y+ F TK G V+R
Sbjct: 570 KLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDA--EDHYLFFVTKRGIVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++++  I ++G IA+ L   DE+L  ++      ILL    G+ + F  + IR    R
Sbjct: 628 THINNYKNIRQNGIIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREIG-R 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ +   ++++  A+V   + D                                
Sbjct: 687 TATGVRGMDIPDDEEIVGFAVVDGIEDD-------------------------------- 714

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               IL ++E G+GKRTS  ++R+ NR GKG++  +V+  ++ G
Sbjct: 715 --------------------ILVITENGYGKRTSITEYRLQNRGGKGVKTLNVT--DKNG 752

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V +++ II+VSD+G  IR+P+++I    RAT+GV I +   D++V ++  +  
Sbjct: 753 KLKTLRKVTNDEDIIVVSDRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDH 812

Query: 900 SEIVDEAESTE 910
            E  +E  S E
Sbjct: 813 QEPEEEVVSNE 823


>gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
 gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
          Length = 857

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/896 (40%), Positives = 539/896 (60%), Gaps = 85/896 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +    +K Y KCAR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARV 61

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL K
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               ++DDL KDTVD   N+D + QEP V+  R PN+LVNGG GIAVGMATN+PTHNL E
Sbjct: 122 MGEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLRE 181

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V++GC A IDNP+I+LD LM+ I+ PDFPTGA I G  G+K+AY TGRG I+IR  + IE
Sbjct: 182 VIEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIYGLQGVKDAYETGRGRIIIRAKAEIE 241

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +    ++IVVTEIPY VNK  ++E IA LV+E ++  I+++ DES RQG R+VI++KR 
Sbjct: 242 -SDESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKRD 300

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTK+ L
Sbjct: 301 ANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKFEL 360

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R                 
Sbjct: 361 KKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKR----------------- 403

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L  +Q++AI+++RL++LTGL  D +  E + L   I    +ILS     
Sbjct: 404 ---------FDLDNLQSKAIVDMRLSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELC 454

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLGY+KR PLS +R
Sbjct: 455 KKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFR 514

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +P G+  ++G+A
Sbjct: 515 EQARGGVGSKGATHRDQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRA 574

Query: 618 LINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + N+L+++  + I  I+      DE   N+ YVVFATK+G V++  L  + +   +G IA
Sbjct: 575 IQNLLNIDSDDAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ- 734
           + +   DE++ V     EN++++  + G+ VRF  + +R    R + GVRG+ L  GD  
Sbjct: 635 INIAEGDEVVDVRLTNGENELIMANRNGRAVRFDENTVRTMG-RTATGVRGMRLDDGDDA 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M +V   D   +  +   ++   +R L+                             
Sbjct: 694 VVGMIVV--NDPVNETVMVVSENGYGKRSLV----------------------------- 722

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                                D+R +NR GKG++   ++  ++ G LVA+  V D++ ++
Sbjct: 723 --------------------EDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDLM 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAEST 909
           +++  G  IR+ V+E R+  RAT+GV + +   K++ + SV +   SE+    E  
Sbjct: 761 IINKSGITIRLAVSECRVMGRATQGVRLINLSKKNDVIASVCKTMSSELEASLEED 816



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 109/254 (42%), Gaps = 17/254 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    VV  +  G VK+  L  Y   R    G   + + + D V D+ + +    ++
Sbjct: 599 EEFINSHYVVFATKNGTVKKTSLEAYSRPR--TNGVIAINIAEGDEVVDVRLTNGENELI 656

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      A G  +  +   +  + +  ++   +      N  V+ 
Sbjct: 657 MANRNGRAVRFDENTVRTMGRTATG--VRGMRLDDGDDAVVGMIVVND----PVNETVMV 710

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R+ + D+ + NR GK    L   D+   +++++  T +ND+++  K G  +R
Sbjct: 711 VSENGYGKRSLVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVTDDNDLMIINKSGITIR 770

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVIS-----MAIVLHADADYDERICYMKHMSAQR 762
             +S  RV   R + GVR I+L+K + VI+     M+  L A  + D +    +      
Sbjct: 771 LAVSECRVMG-RATQGVRLINLSKKNDVIASVCKTMSSELEASLEEDNKEELDQPDREGE 829

Query: 763 RLISGDTEEITSLK 776
             ++  T++ T+ +
Sbjct: 830 DTMNSGTDKSTAEE 843


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/841 (43%), Positives = 529/841 (62%), Gaps = 35/841 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  +E I+V+E+PYQVNKA ++E+IAELVRE++I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   +   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G ++ ++DED I  E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P    E+  +  Y+VF+TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ETFDDERYLVFSTKQGIAKRSSLSSFAHI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R    R++ GV+ I+
Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTMG-RSATGVKAIT 692

Query: 729 LAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+V+SM I+  H D     +  + K   A    +     +     N +   G++  
Sbjct: 693 LDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  +  + ++ ++  G   R S  D   + R  +G++   +S  +E   +  V  V
Sbjct: 753 VTTV---VGNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVATVAKV 809

Query: 848 N 848
            
Sbjct: 810 T 810


>gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
 gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
          Length = 870

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/918 (38%), Positives = 518/918 (56%), Gaps = 101/918 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE   +  E E   I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE---TPGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++++ KC+R+ G+VMGKYHPHG++AIYDAL R+ QDWSLR  L+ GQGNFGS 
Sbjct: 58  YDGGYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTEC++   A  ++ D+ +D VDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 118 GDDPAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSA 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +++PD   +     LM  I+GPDFPT A ILGR G
Sbjct: 178 GIAVGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATILGRKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ R+  I
Sbjct: 238 IEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE+  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   ++ 
Sbjct: 297 ADIRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSID 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +V+ + +V+ RRT++ L KA +  H+  G   A+  LDEV+ +IR SP+ E AR 
Sbjct: 357 AFVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARN 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q +AIL L+L RL  L R +I +
Sbjct: 417 GLME--------------------------LLGIDELQAQAILNLQLRRLAALQRQEIMD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
             ++L  +I E   IL S  R   I+ +EL +V D+    RRT I+    ++  ED I  
Sbjct: 451 RHDALEADITELNAILGSPERQRTIVSEELATVVDKFGDERRTHILPFDGEVSIEDLIAE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YRAQRRGGKG  G  +R++D V   F+ +TH  +LFF++L
Sbjct: 511 EDVVVTITRGGYAKRTRVDAYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     A+G+ + N+L+   GE+I  ++   + E +    ++V ATK G
Sbjct: 571 GRVYRAKAYELPEAGRDAKGQHVANLLAFQPGEKIAQVLDLRDYEQAE---HLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +L+++      G IA+ L        DE+++      + D++L ++ GQ VRF  
Sbjct: 628 LVKKTRLTEYDSNRSGGVIAINLREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTA 687

Query: 711 SAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S   +   GR + GV G+     D +++M +V                            
Sbjct: 688 SDEALRPMGRATSGVTGMKFRGDDDLLAMDVVRE-------------------------- 721

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS--SYDFRISNRSGKGI 827
                                      + F+ TV+E G  KRT+    ++R   R G GI
Sbjct: 722 ---------------------------DAFLFTVTEGGIAKRTALTVENYRQQGRGGLGI 754

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++ + N  G LV     + +D+++++ ++G ++R   +E+    R T+GV+      
Sbjct: 755 KVANLPEAN--GDLVGALVTDADDEVLVIMERGKIVRSATSEVNATGRTTQGVIFAKPDT 812

Query: 888 DERVVSVERIRESEIVDE 905
            +R+++V R  E  + D+
Sbjct: 813 GDRIIAVARNSERHLEDD 830


>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
 gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
          Length = 809

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/890 (41%), Positives = 552/890 (62%), Gaps = 89/890 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D E +  I  V I  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M  +G+  
Sbjct: 2   ADIENKMNIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +R+ GEVMGKYHPHG++AIYDA  R+AQD++LR  L++GQGNFG++DGD  AA
Sbjct: 62  DKPYKKSSRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK A  +L D+ KDTVDF PNYD + +EPVVL +++PN+LVNG  GIAVGMA
Sbjct: 122 PRYTEVRMQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+D     IDN DI +D LM+ ++GPDFPTGA I+G  GIK AY TGRG 
Sbjct: 182 TNMPPHNLNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V++IE    ++ +I+VTEIPYQVNK  ++ KI EL+++KRI  I+DLRDES+ +G
Sbjct: 242 ITVRAVANIE-EHNNKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ ++ILN LY++T +Q+ F V  +AL   +P+   L  ++  +V  + +
Sbjct: 301 IRIVIELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR ++ L KA DRAH++ GL  A+ ++DE+++IIR S +   A+ +LM+R       
Sbjct: 361 VITRRCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYS--DAQEKLMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +++Q  +ILE+RL RL GL R+ +++E NSL  EI   
Sbjct: 412 -------------------FGFTKIQAESILEMRLRRLQGLEREKLQDEYNSLIKEIARL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL +   +L IIK+EL+ +K++    RRT I     ++E E+ I  ED+V+T++  GY
Sbjct: 453 KEILGNERLILNIIKEELIEIKEKFGDDRRTEIKPNFDEIEIEELIKEEDVVITLTKQGY 512

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   Y+ Q RGGKG   +  +++D+V  LF+ STH+ +LFF++ G VYK K + +P
Sbjct: 513 IKRIPSDTYKVQNRGGKGVVALTTKEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIP 572

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  QA+G+ +IN+L L  GE++  ++P  +   + ++ Y++ ATK G ++R  +  F  
Sbjct: 573 EGKRQAKGQNIINLLELMHGEKVNAVIPVKD---AGSDEYLIMATKKGTIKRTSVELFKA 629

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G  A+ L   DE++ V   T E+  +L TK G  ++F +S IR    R   GVRGI
Sbjct: 630 IRKVGMKAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREIG-RTGQGVRGI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D+V+SM +                                               
Sbjct: 689 KLDKDDEVVSMNLASEG------------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + +L +SE G+GKRT + ++++ NR GKG++   V+  ++ G +V+   V
Sbjct: 706 ----------KHLLVISEYGYGKRTLASNYKVQNRGGKGVKTYKVT--DKTGFVVSSKMV 753

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896
           N +D+II+++  G +IR+ V +I +  R T+GV+I    KD +++V+V +
Sbjct: 754 NPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAK 803


>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
 gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
          Length = 876

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/919 (38%), Positives = 540/919 (58%), Gaps = 64/919 (6%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        + ++ I    + +EM  SY+ YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADSVGPGGGGPGDSDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I+NP+I    LM +I GPDFPTG  ILGRTG
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQILGRTG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y +GRGS+ +RGV+ +E        DR+ +++T +PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLSGRGSVTMRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L  R                            LS VQ  AIL+++L RLT L  D 
Sbjct: 421 ARTQLQDR--------------------------HGLSAVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+LGII++EL  +++    PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRERHSVPRRTEILDLAGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++   E     ++  ++  T
Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 QGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLAD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L KGD ++SM ++    AD                       +
Sbjct: 692 GELRPLGRTARGVRSMNLRKGDSLVSMDVLPAELAD-----------------------Q 728

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           I +  +D     +  +     +  +  ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 729 IAASADDVGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 788

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+
Sbjct: 789 F--RTDADELVGLRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRL 846

Query: 892 VSVERI-RESEIVDEAEST 909
             V  +  E+E  D+ E++
Sbjct: 847 ADVVLVPPEAETDDDNEAS 865



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 35/270 (12%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +  ++ ++  G++KR  LS +   R    G   + + D D +T +
Sbjct: 609 EEAITSLLAVSEFNDDTDLLMLTQGGFIKRTRLSAFSNIRS--NGLIAIGLEDGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP- 637
            +     SVL  S  G    ++     L      ARG   +  ++L +G+ + ++   P 
Sbjct: 667 RLSIPGDSVLIGSKAGMTIHFRLADGELRPLGRTARG---VRSMNLRKGDSLVSMDVLPA 723

Query: 638 -----------------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-- 672
                                  E   +    +V+ A+  G  +R  ++ F    R+G  
Sbjct: 724 ELADQIAASADDVGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMG 783

Query: 673 KIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             AMK     DE++ +       ++LL ++ G  VR           R + GVR   L K
Sbjct: 784 LRAMKFRTDADELVGLRVLGAGEELLLVSEKGVIVRTSA-DAIPQQSRAATGVRLQRLDK 842

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQ 761
           GD++  + +V       D+     +  S  
Sbjct: 843 GDRLADVVLVPPEAETDDDNEASAEESSEP 872


>gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
 gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
          Length = 869

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/896 (45%), Positives = 604/896 (67%), Gaps = 37/896 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++   WNK Y K A
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  + FLLDDL +++VDFR NYD S  EPVVL A++PN+LVNG  G+AVGMATN+PTHNL
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C   ++N ++  D L+++I+GPDFPTG +I+G  GIK ++ TG+GSI+IR  +H
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFETGKGSIIIRSKTH 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+T   R+ I+V E+PYQVNKA ++E IA LV+EKR+  I+DLRDES+++G RVVIELK
Sbjct: 244 FEETET-RKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGAS +V+LNQL++ T LQ+ +S NM+ L+  +P   +L  IL AF+A R+EV+ RRT++
Sbjct: 303 RGASFEVVLNQLFQMTQLQTSYSTNMMLLDNMRPTLMSLRDILAAFIAHRKEVISRRTEF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR++A+VLV L +A+ N+DEVVRI++ S + ETA + L  + W   +  +L+  ++
Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELL--VE 420

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             S     +    LS  Q++AILE+++ R+T   +  +  E+++    +KEC  IL S +
Sbjct: 421 TISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEA 480

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMVVTVSHLGYVKRVPLS 554
            L  +I QEL  +K +    R++ I++ +  +  +ED I RE +VVT ++ GY+KRV +S
Sbjct: 481 VLTNVIVQELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVQIS 540

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGGKGR    ++ ED +  +F++STH  +LFFSS G VYK K ++LPIG PQ+R
Sbjct: 541 NYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIGEPQSR 600

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+AL+NI  L   E IT+I+P      S +   ++F T  G V+RN +SDF  +  +GK+
Sbjct: 601 GRALVNIFDLADDESITSILPLK----SSDAENLIFLTAQGKVKRNSMSDFAYVPANGKV 656

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KL+  D ++SV+T   E+ I ++T+ G+C+RF +  +RV   R+S GV+ I+L K D 
Sbjct: 657 AIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITLGKDDS 716

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            IS++I+       +++  YMK    +R     + E                        
Sbjct: 717 AISLSILNRRILSPEDKAEYMKTKFFERIQNPENHE------------------------ 752

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQF+LTV+E G+GK TSSY++RI+NR G GI     S+ N  G +V+ F V  ++ I+
Sbjct: 753 --EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNHIM 808

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           LV+++G +IR+  + I +  R T+GV +FS   +ERV SV  + E E  D++E+TE
Sbjct: 809 LVTNRGQVIRIEASNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863


>gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
 gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
          Length = 825

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/908 (39%), Positives = 539/908 (59%), Gaps = 90/908 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ K+T+D++ NYD +  EP+VL AR P++LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG VI+GR+GI +AY +G+G+
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V+R  ++IE+    RE+I+VTEIP+ VNKA +++KIAEL R+K I  I  +RDESDR G
Sbjct: 242 VVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E+
Sbjct: 302 MRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQED 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L+KA  RAH+L GL IA+ ++DE+V IIR S + + A+  L+ R       
Sbjct: 362 VVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L ++I + 
Sbjct: 415 -------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H G
Sbjct: 456 KDILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S +R Q RGG+G  G+ ++D+DF+  L   STH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L L++GE+I  ++  PE     N   + F TK G V+R  + +F 
Sbjct: 576 PEYSRIAKGLPIINLLQLDKGEKIQAMINVPEGHEEGN---LFFITKMGVVKRTSVEEFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  SG IA+ L   DE+ +V T   + +I++ T LG    F  S +RV   R++ GVRG
Sbjct: 633 NIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHLGYAASFKESDVRVMG-RSAAGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   ++                                             
Sbjct: 692 INLRENDYVIGSEVLKPG------------------------------------------ 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +++ +  G   RT+  ++ I  R GKGI  T V K N  G L  +  
Sbjct: 710 ---------AEVLVISENGYGK--RTAVSEYPIKGRGGKGILTTKVGKKN--GRLAGMTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV--- 903
           V+    I+L++  G +IR    ++    RAT GV +    + + V S+  +   +     
Sbjct: 757 VDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVPNDDDDSEK 816

Query: 904 -DEAESTE 910
            DE   +E
Sbjct: 817 RDENSKSE 824


>gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
 gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
          Length = 922

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/898 (42%), Positives = 534/898 (59%), Gaps = 72/898 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A+IDN D+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R    +E     G R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   DV+LN LY  T +QS+F +N+VAL   +P+   L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  +G  YLS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADSCRPEGLDPQYGL-REGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E + IL+S  RL+ +I++EL  VK E    RRT I+    D+   D I  E+ V
Sbjct: 482 ILSLIGELIRILTSPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y AQRRGGKG+S   ++DED+V  L + ++H ++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------------EDE----- 640
             + + +P  S  ARG+ L+N+L L++GERIT ++                 +DE     
Sbjct: 602 WLRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGLVIE 661

Query: 641 -----------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                                  +     ++  AT  G V++  L  F +   +G IA+K
Sbjct: 662 GEATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALK 721

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  D +++        +++L +  G+ +RF  S +R    R + GVRG+ L K  ++IS
Sbjct: 722 LEEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTMG-RTARGVRGMRLGKDQRLIS 780

Query: 738 MAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           M I      +L A      +   +     + R   G    +TS +N   V     ++   
Sbjct: 781 MLIPESGAQILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQD--- 837

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + I+ +S++G   RT   +   S R+ +G+    ++K      LV +  V +
Sbjct: 838 -----GEEIMLISDQGTLVRTRVDEVSSSGRNTQGVTLIKLAKDE---TLVGLERVQE 887



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 86/216 (39%), Gaps = 15/216 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+ PL  +   R    G   + + + D +    I      V+ FS
Sbjct: 687 PTGAFIFMATAFGTVKKTPLVQFSRPRSA--GLIALKLEEGDTLIAAAITDGAKEVMLFS 744

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V +    ++      ARG   +  + L + +R+ +++  PE     +   ++ A++
Sbjct: 745 DAGKVLRFAESKVRTMGRTARG---VRGMRLGKDQRLISML-IPE-----SGAQILTASE 795

Query: 654 HGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  L  F +  R G      +  +   +++         +I+L +  G  VR  +
Sbjct: 796 RGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRV 855

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             +   +GRN+ GV  I LAK + ++ +  V     
Sbjct: 856 DEVSS-SGRNTQGVTLIKLAKDETLVGLERVQEPTP 890


>gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/871 (42%), Positives = 536/871 (61%), Gaps = 37/871 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VKCAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A  LL DL K+TVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG + V+ N +  +D L+EII  PDFPTG +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H  E    +R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A+ +LM R+W++S ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    +                 Y I  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
            NE   +  +I + LDIL+   R+  II  EL   K+E        RR+ I     D+  
Sbjct: 482 VNEYKEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSSIELNATDLGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P++ YRAQ+RGG+G+  +  +++D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P   E+ +   + Y+
Sbjct: 602 LCFSNRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTFPEDRYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             +T  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQ 761
             + +R    R + GVRG++L +G QVI++ +       VL A  +   +   +   +  
Sbjct: 722 DENDVRPMG-RTARGVRGMNLEEGQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            R   G     TS +N   V   + +            I+ ++  G   RT   + R   
Sbjct: 781 GRGTKGMIAIQTSERNGKVVAATLVD--------AADEIMLITTGGVLIRTRVAEIREMG 832

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R+ +G+    V    ++  L  +   +  + 
Sbjct: 833 RATQGVTLIAVEDGTKLSGLQRILESDIEED 863


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/870 (43%), Positives = 535/870 (61%), Gaps = 37/870 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K   S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M   WN+
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A  +L D+ K+T+DF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+ G + ++ +PD  +D L++II  PDFPTG +I G TG++  Y TGRG +V
Sbjct: 182 IPPHNLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIYGVTGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   D R+ I++ E+PYQVNK  +LE+IAE VREK++  I+D+RDESD+ G 
Sbjct: 242 MRARTHFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR   A+V+LN L++ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  AR+ELM RSW++S ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            +++   +                 Y I SDG   LSE Q   IL++RL RLTGL +D I
Sbjct: 422 SMLERTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMED 529
            NE   +  +I E LDIL+   R+L II  EL +V  E        RR+ I     D+E 
Sbjct: 482 LNEYGDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDTRRSEIELNASDLET 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  PLS YRAQ+RGG+GR     +++D+V  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS  G +Y  KVW +P GS  +RGK ++N+  L   E+IT I+P   E+ +   N Y+
Sbjct: 602 LCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNFPENHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  L+DF    ++G IA+ LD  D ++        +D++L +  G+ VRF
Sbjct: 662 FMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDAGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQ 761
             + +R    R + GV+G++L    +VI++ +       VL A  +   +   +   +  
Sbjct: 722 DENDVRPMG-RTARGVKGMNLEDEQKVIALLVAGDENQSVLTATENGFGKRTPIAEYTRH 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            R   G     TS +N   V   +  E           I+ ++  G   RT   + R   
Sbjct: 781 GRGTKGMIAIQTSERNGKVVAATLVSE--------NDEIMLITTGGVLIRTRVSEIREMG 832

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDND 851
           R+ +G+    + +   +  L  +   +  D
Sbjct: 833 RATQGVTLISIEEGTTLSGLQRILESDIED 862


>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
 gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
          Length = 818

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/899 (41%), Positives = 563/899 (62%), Gaps = 85/899 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +++   + I    I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM  +G+
Sbjct: 1   MDNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + K AR  GEVM KYHPHG+++IYDA+ RMAQD+S+R +L++G GNFGS++GD  
Sbjct: 61  TPDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  +L D+ K TVDF PN+D   +EP VL +R+P +LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT+IP HNLGEV+D  V +ID+ +  ++ L +II+GPDFPTGA ILGR GI+  Y TG+
Sbjct: 181 MATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKILGRAGIREGYLTGQ 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I IR    IE+T   +EQ+VV+EIPYQVNK  ++EKI ELV+EK I  I+++RDE+++
Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+A ++LN+LY++TSLQ   S+ M+AL   +P++ TL+ IL  ++  +
Sbjct: 301 EGIRIVIELKRDANASIVLNKLYKHTSLQESMSMIMIALVNGEPKKLTLLQILNEYIKHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RRT++ L KA +RAH+L GL IA+ N+DE+++IIR S +   A+++LM       
Sbjct: 361 KEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYD--DAKQKLMD------ 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               T  LSEVQT+AIL+++LARL GL R+ I NE + L  +I 
Sbjct: 413 --------------------TFSLSEVQTQAILDMKLARLQGLEREKIENEYSELQKKIS 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +ILS+   L+ +IK+ELL +K++    RRT+IV+   ++E+ED I R+++ +T++H 
Sbjct: 453 YYKEILSNEGLLMNVIKEELLEIKEKYADERRTQIVDDDTNIEEEDLIERKNVTITLTHK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR+ +  Y+ Q+RGGKG +G+  R+ DFV ++   STH  +LFF++ G  +K K ++
Sbjct: 513 GYAKRMDVDEYKTQKRGGKGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQ 572

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  +  A+G  +IN ++L++ E IT ++P  E      + Y++  T  G +++ KLS+F
Sbjct: 573 IPEATRTAKGIPIINFVNLDKTEEITAVIPIDEFRE---DKYLIAVTSQGLIKKVKLSEF 629

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               +SG IA+KL   D+++++E    ++D+L+ T+ G  +RF  + +R   GR S+GV+
Sbjct: 630 ESNRKSGLIAVKLHDGDKLIAIEKTNGDDDVLIVTRKGMSIRFNENDVRA-TGRQSIGVK 688

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I+L   D++ISM +V                                            
Sbjct: 689 AITLKGDDEIISMQLVS------------------------------------------- 705

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     K + +L VS+KG+GKRT +  + +  R GKG +  D  K +  G L    
Sbjct: 706 ----------KGKELLVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGAL 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V++ D I+L++  G +IR+   EI   SRATKGV I    +D  ++S+ ++   E  +
Sbjct: 756 IVDEEDDIMLINSDGIVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVMNEEDSE 814


>gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 827

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 535/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVISIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SE G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 709 -----------ADDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+  +   
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/841 (42%), Positives = 528/841 (62%), Gaps = 35/841 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  +  I+V+E+PYQVNKA ++E+IAELVRE++I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   +   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G ++ ++DED I  E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P    E+  +  Y+VF+TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ETFDDERYLVFSTKQGIAKRSSLSSFAHI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R    R++ GV+ I+
Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTMG-RSATGVKAIT 692

Query: 729 LAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+V+SM I+  H D     +  + K   A    +     +     N +   G++  
Sbjct: 693 LDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  +  + ++ ++  G   R S  D   + R  +G++   +S  +E   +  V  V
Sbjct: 753 VTTV---VGNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVATVAKV 809

Query: 848 N 848
            
Sbjct: 810 T 810


>gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/900 (40%), Positives = 546/900 (60%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  + D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+H  ++R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHVLLKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
 gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
          Length = 851

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 525/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+      +++NP    D  L A ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE  SG R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIE-ESGSRQTIVITELPFQVNPDNLISNIAESVANGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L RL  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRRLAALERQKIVD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +   IL+   R   I+  EL ++ ++    RRT I+    ++ DED I R
Sbjct: 450 ELAEIEEEIADLKHILAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITATGYAKRTKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPESGRAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M++V   +                             
Sbjct: 687 RPMGRATAGVKGMRFRGDDQLLAMSVVHDGE----------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 718 ------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    ++ +D+I  ++  G +IR  VN+IR +SRAT GV +   A D  ++++
Sbjct: 754 --KRGKLIGAISIDKDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           +R  E +  ++A++
Sbjct: 812 DRNVEEDGEEDAQA 825


>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
 gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
          Length = 852

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/889 (41%), Positives = 539/889 (60%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E + I  ++I +EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRILFGM ++GV  NK
Sbjct: 3   EGENENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR  L++GQGNFGS+DGD PAA R
Sbjct: 63  PHKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  +L D+ KDTVD++ N+D S +EPVVL A+ P +L+NG  GIAVGMATN
Sbjct: 123 YTEARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEV+ G +A I+N +I +  LME +  PDFPTG +I G  G+K A+ TGRG IV
Sbjct: 183 MAPHNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIYGYNGVKAAFETGRGRIV 242

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG ++IE   G  +E IV+TEIPY VNKA+M+EK A+L+ EK+I  I+ +RDESDR G 
Sbjct: 243 MRGKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V ELKR A   VILN LY++T LQ+ FSVN VAL   +P    L  ++  +V  R EV
Sbjct: 303 RIVYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVHYVDHRHEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RRT+Y L +A  RAH+L G  IA+ +LDEV+ +IR S +PETAR  L++R        
Sbjct: 363 VIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAIL++RL RLTG+ R+ I  E   +   I+E  
Sbjct: 415 ------------------FDLSEIQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  + + IIK EL  +KD     RRT I     D   ED I  E++++TVSH GYV
Sbjct: 457 EILENEDKRMEIIKTELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L+ YR Q RGG G  GV  +++DF   LF  STH  +L F+  G ++  K + +P 
Sbjct: 517 KRTALTEYRTQGRGGVGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G+  ++G+ + N++++   +RI +I+   +  D    NN ++V  TK G +++  L  + 
Sbjct: 577 GNKTSKGRPIQNLINIQSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ +   D++++V+    +  I++  K G+ + FP +A+R    R + GV+ 
Sbjct: 637 RPRTNGIIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPMG-RTATGVKA 695

Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I+L  + D VI M       A                                       
Sbjct: 696 ITLTGQDDFVIGMVCASEDTAT-------------------------------------- 717

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE G+GKR+   ++RI+NR GKG++A +V+  ++ GALVA+ 
Sbjct: 718 --------------LLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVT--DKTGALVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V D D +++++  G +IR+ ++ +RI  RAT+GV +      +++ SV
Sbjct: 762 EVTDADDLMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810


>gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
          Length = 864

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/857 (43%), Positives = 524/857 (61%), Gaps = 40/857 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K AH LL 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV++GC+ 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263
            + NPD  ++ L+E+I  PDFPTG +I G +G++  Y TGRG +++R  +H E    G+R
Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + I+V  +PYQVNK  + EKIA+LV +KRI  I+D+RDESD+ G R+VIELKRG   +VI
Sbjct: 241 QAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVI 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P    L  I++ F+  R EVV RRT + L KAR+R
Sbjct: 301 LNNLYKNTQLQDTFGMNMVALVDGQPRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD------- 436
            HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++   DD       
Sbjct: 361 GHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPGGR 420

Query: 437 ---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                      + +  DG   LSEVQ + IL +RL RLTGL +D I  E   +   I + 
Sbjct: 421 AAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADL 480

Query: 488 LDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           LDIL+   R+  II  ELL++K E        RR+ I     +++ ED I   DMVVT+S
Sbjct: 481 LDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTLS 540

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K  PLS YRAQ+RGG+G+    M++ D+V  LFI +TH  +L FS  G VY  KV
Sbjct: 541 QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYWLKV 600

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           W +P GS  +RG+ ++N+  L   E+IT ++P  E      + YV  AT  G V++  LS
Sbjct: 601 WEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKE---FSEDHYVFMATSRGTVKKTPLS 657

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF    ++G IA+ LD  D ++  +     +D++L +  G+ VRF  + +R    R + G
Sbjct: 658 DFSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPMG-RTARG 716

Query: 724 VRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           VRG+ L +G  VI+M +       VL A  +   +   +   +   R   G     TS +
Sbjct: 717 VRGMMLEEGQVVIAMLVAGDETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTSAR 776

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V           L      I+ ++  G   RT   + R   R+ +G+    V   +
Sbjct: 777 NGKVV--------GAVLVRPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDNS 828

Query: 837 EIGALVAVFPVNDNDQI 853
            +  +  V   + +D +
Sbjct: 829 MLSGVRRVVESDADDDV 845


>gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
 gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
          Length = 822

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/901 (41%), Positives = 550/901 (61%), Gaps = 85/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++GI    +T+EM+ S+++YA++VI+ RA+PD+RDGLKPV RRI+ GM ++G   +K Y
Sbjct: 2   EQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R ++++G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ D+ KDTV+F PNYDG   EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGEV+D  +AV  NPDI +  LME  I+GPDFPTGA ILG++ IK AY TG G I++
Sbjct: 182 PHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYILGKSAIKKAYETGNGLIIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I    G ++ I+V EIPY VNKA ++EK+AE V+EKRI  I ++RDES+R+G R+
Sbjct: 242 RAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++    +VILNQL++ TSLQ+ F VN +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 302 VIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALVNNEPQTLNLKQMITYYLDHQEEVIK 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA DRAH+L GL  A+  +D ++ +IR S   E  ++ LM            
Sbjct: 362 RRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q +AI E++L RL GL R+ I NELN L   I +  DI
Sbjct: 412 ----------------FDMSERQAKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R R+L II+ ELL +KD+    RRT I++G  D+EDED I  ED++++++  GYVKR
Sbjct: 456 LENRERILAIIEAELLQLKDKFADKRRTEIIQGTFDLEDEDLIPVEDIIISLTTNGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ Q RGG+G  G+   ++D V  L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 516 MPVDTYKTQNRGGRGIKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L+L++ E + +++    ED       Y+ F T +G V++  + +F  I 
Sbjct: 576 RTAKGLPVVNLLNLDKDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++SV+  T    IL+    G+ +RF  S +R    R + GVRGI++
Sbjct: 636 QSGKIAIGLKEDDQLVSVKLTTGNAQILVAASNGKLIRFKESDVRKMG-RTASGVRGINV 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G  VI M                                                   
Sbjct: 695 DGG-HVIGMT-------------------------------------------------- 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + QFI+ +SE G+GK +   D+R S+R GKG++  + +   + G LVA+  VN 
Sbjct: 704 ---TDQEGQFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTA--KTGQLVALRAVNG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++ +++++ +G +IR+P+++++ A R T+GV +   A+   V SVE + ++E  +E  S 
Sbjct: 759 DEDLLIITSEGIVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSSVEVVEKAEEDNEEPSD 818

Query: 910 E 910
           E
Sbjct: 819 E 819



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 109/224 (48%), Gaps = 16/224 (7%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           + +  V+  G VK+  +  +   R+ GK    + ++++D +  + + + +  +L  +S G
Sbjct: 612 EYLFFVTLNGLVKKTHIDEFENIRQSGK--IAIGLKEDDQLVSVKLTTGNAQILVAASNG 669

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            + + K   +      A G   +  ++++ G     ++    D+      +++  +++G 
Sbjct: 670 KLIRFKESDVRKMGRTASG---VRGINVDGG----HVIGMTTDQE---GQFIMAISENGY 719

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAI 713
            + + L D+ + +R GK    +++  +   ++++     + D+L+ T  G  +R P+  +
Sbjct: 720 GKMSPLDDYRESHRGGKGVKTINTTAKTGQLVALRAVNGDEDLLIITSEGIVIRLPMDQV 779

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +  AGRN+ GVR I +A+G  V S+ +V  A+ D +E    +K 
Sbjct: 780 KT-AGRNTQGVRLIKVAEGSTVSSVEVVEKAEEDNEEPSDEIKE 822


>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
 gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 865

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/919 (38%), Positives = 542/919 (58%), Gaps = 69/919 (7%)

Query: 1   MTEHIISSDE----EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M++ I+ SD     E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRI
Sbjct: 1   MSD-ILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRI 59

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GN
Sbjct: 60  LYAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGN 119

Query: 117 FGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           FGSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L
Sbjct: 120 FGSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVGMATNIP HNLGE+++G  ++I+NP I+   L EII+GPDFPTG  ILGR 
Sbjct: 180 LNGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQILGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GI+  + TGRGSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK
Sbjct: 240 GIRETFKTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P  
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  
Sbjct: 360 LSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSI 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +AR +L                               LS +Q  AIL+++L RLT L  D
Sbjct: 420 SAREKL--------------------------QNDHKLSSIQADAILQMQLRRLTALEAD 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I+ E N L  +I     IL+S+ R+  II +EL  + +   +PR+T I++    ++D D
Sbjct: 454 KIKGEHNDLTQKINLYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDID 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  E  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L 
Sbjct: 514 LIANERSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLL 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G  Y    +R+P+ S  A+G   + +L + + E+IT+I+     +S  ++ Y++  
Sbjct: 574 FSDKGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSIVAV---DSFVDDSYLLML 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +K G  + F + 
Sbjct: 631 TKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGMAIHFRLD 690

Query: 712 AIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              +   GR + GV+ ++L +GD ++SM ++    AD   +I Y K              
Sbjct: 691 INELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLADQLAKIEYPKEDL----------- 739

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           ++  +E      ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 740 ----------------DDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV++  + + ++++LV++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKYDQLVSLKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGVKLQRLDDGDH 841

Query: 891 VVSVERIRESEIVDEAEST 909
           +  V  +   +I +E + +
Sbjct: 842 LSEVVLVPREQIEEEDQPS 860



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +   D  V +  ++ ++  G++KR  LS +   R    G   + + D D +T +
Sbjct: 609 EEKITSIVAVDSFVDDSYLLMLTKAGFIKRTALSAFSKIRS--NGLIAINLEDGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTI----- 633
            +     SVL  S  G    ++  +  L      ARG   +  ++L +G+ + ++     
Sbjct: 667 RLSKEGDSVLIGSKTGMAIHFRLDINELRPLGRTARG---VKSMNLREGDNLVSMDVLTS 723

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +    +E+S +  +V+ A+  G  +R  ++ F    R+G     +
Sbjct: 724 NLADQLAKIEYPKEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 679 DSR---DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
             R   D+++S++   +  ++LL T+ G  VR           R + GV+   L  GD +
Sbjct: 784 KFRIKYDQLVSLKVLGEGEELLLVTEKGVIVRTNA-DQISQQSRAATGVKLQRLDDGDHL 842

Query: 736 ISMAIVLHADADYDERICYMKH 757
             + +V     + +++   ++ 
Sbjct: 843 SEVVLVPREQIEEEDQPSSVEQ 864


>gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
 gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
          Length = 922

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/898 (41%), Positives = 535/898 (59%), Gaps = 72/898 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A++DN ++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYV 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R    +E     G R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T +QS+F +N+VAL   +P+   L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D+ Y +  DG  YLS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADSCRPEGLDAQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E + IL++  RL+ +I++EL  VK E    RRT I+    D+   D I  E+ V
Sbjct: 482 ILALIGELIRILTNPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y AQRRGGKG+S   ++DED+V  L + ++H ++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------------EDE----- 640
             + + +P  S  ARG+ L+N+L L++GERIT ++                 +DE     
Sbjct: 602 WLRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGVVIE 661

Query: 641 -----------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                                  +     ++  AT  G V++  L  F +   +G IA+K
Sbjct: 662 GEATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALK 721

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  D +++        +++L +  G+ +RF  S +R    R + GVRG+ L K  Q+IS
Sbjct: 722 LEEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTMG-RTARGVRGMRLGKDQQLIS 780

Query: 738 MAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           M I      +L A      +   +     + R   G    +TS +N   V     ++   
Sbjct: 781 MLIPESGAQILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQD--- 837

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + I+ +S++G   RT   +   S R+ +G+    ++K      LV +  V +
Sbjct: 838 -----GEEIMLISDQGTLVRTRVDEVSSSGRNTQGVTLIKLAKDE---TLVGLERVQE 887



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 93/248 (37%), Gaps = 15/248 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+ PL  +   R    G   + + + D +    I      V+ FS
Sbjct: 687 PTGAFIFMATAFGTVKKTPLVQFSRPRSA--GLIALKLEEGDTLIAAAITDGAKEVMLFS 744

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V +    ++      ARG   +  + L + +++ +++  PE     +   ++ A++
Sbjct: 745 DAGKVLRFAESKVRTMGRTARG---VRGMRLGKDQQLISML-IPE-----SGAQILTASE 795

Query: 654 HGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  L  F +  R G      +  +   +++         +I+L +  G  VR  +
Sbjct: 796 RGFGKRTGLGKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRV 855

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +   +GRN+ GV  I LAK + ++ +  V       ++ +   +  +           
Sbjct: 856 DEVSS-SGRNTQGVTLIKLAKDETLVGLERVQEPTPVEEDELVEGEEGAEVAENADAPVA 914

Query: 771 EITSLKND 778
           +      +
Sbjct: 915 DAEEGSEE 922


>gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
 gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
          Length = 851

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 525/914 (57%), Gaps = 95/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+      +++NP    D  L A ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE  SG R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIE-ESGSRQTIVITELPFQVNPDNLISNIAESVANGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L RL  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRRLAALERQKIVD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +   IL+   R   I+  EL ++ ++    RRT I+    ++ DED I R
Sbjct: 450 ELAEIEEEIADLKHILAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITATGYAKRTKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     +S  +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPESGRAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF     ++
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     DQ+++M++V   +                             
Sbjct: 687 RPMGRATAGVKGMRFRGDDQLLAMSVVHDGE----------------------------- 717

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   F+L  +  G+GKRT+  ++    R G G+     + 
Sbjct: 718 ------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP 753

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+    ++ +D+I  ++  G +IR  VN+IR +SRAT GV +   A D  ++++
Sbjct: 754 --KRGKLIGAISIDKDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLAI 811

Query: 895 ERIRESEIVDEAES 908
           +R  E +  ++A++
Sbjct: 812 DRNVEEDGEEDAQA 825


>gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis]
 gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
          Length = 877

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/839 (43%), Positives = 516/839 (61%), Gaps = 29/839 (3%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K AH LL 
Sbjct: 61  YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EVVDGC+ 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263
            + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG +++R  +H E    G+R
Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG   +V+
Sbjct: 241 QAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EVV RRT + L KAR+R
Sbjct: 301 LNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++  +D        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGGVA 420

Query: 436 -------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                     Y +  DG   LSE Q + IL +RL RLTGL +D I  E   +   I + L
Sbjct: 421 AFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLL 480

Query: 489 DILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           DIL+   R+  II +EL ++K E        RR  I     +++ ED I   DMVVT+SH
Sbjct: 481 DILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSH 540

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +L FS+ G VY  KVW
Sbjct: 541 GGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVW 600

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G+  +RGK ++N+  L  GE++T ++P  E      + YV  AT  G V++  LSD
Sbjct: 601 EVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKE---FSEDHYVFMATSRGTVKKTPLSD 657

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R    RN+ GV
Sbjct: 658 FSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMG-RNARGV 716

Query: 725 RGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +G  VI++ +               Y K          G   +       SS  
Sbjct: 717 RGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRN 776

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           G +       L +    I+ ++  G   RT   + R   R+ +G+    V   + +  +
Sbjct: 777 GRV---VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGV 832



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 14/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+ PLS +   R+   G   V + D D++    
Sbjct: 624 EKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKA--GIIAVDLDDGDYLIGAD 681

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  + L +G+ +  ++   ++  
Sbjct: 682 LTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG---VRGMMLEEGQTVIALLVAGDETQ 738

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
           S     V+ AT++G  +R  ++++ +  R  K  + + +      ++        ++I+L
Sbjct: 739 S-----VLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVMPSDEIML 793

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  ++ IR    R + GV  IS+  G  +  +  V+ +
Sbjct: 794 ITTGGVLVRTRVAEIREMG-RATQGVTLISVDDGSSLSGVRRVVES 838


>gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius]
          Length = 858

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 548/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + V     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSKAAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG++++YDAL RMAQ +S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKEAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E N L I I E   IL
Sbjct: 414 ---------------FNLSHIQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  IIK+EL  +K++   PRRT I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIKEELTEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + + S +   + F T++G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS---LAFFTRNGVVKRTSLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +        +++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIATPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++ + + +                                          
Sbjct: 695 IDTDFVVDADVINNIEQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTV +KG GKRT+  ++R++NR+G G+ A  +S   + G +V    V+D
Sbjct: 713 ----------ILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +  IR A R T GV+I +  KD++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAKCPKEDEEIELDEN 820


>gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu]
          Length = 851

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/847 (42%), Positives = 521/847 (61%), Gaps = 27/847 (3%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F+A R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLAHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDILS   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILSRPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHSG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + L  G QVI+M +    +          Y K          G   +       S   G 
Sbjct: 717 MQLEDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGK 776

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +       L   E  I+ ++  G   RT   + R   R+ +G+    + +  ++  L  +
Sbjct: 777 V---VAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833

Query: 845 FPVNDND 851
               D D
Sbjct: 834 AEAEDGD 840


>gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
 gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
          Length = 861

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/892 (41%), Positives = 540/892 (60%), Gaps = 78/892 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM  +GV  N+ Y
Sbjct: 3   DGEKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ WSLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K A  +LDDL K+TVDF PN+D S QEP VL ++ PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  +  +DN DI+ + L++ ++ PDFPTG +I G  G ++A  TGRG IVIR
Sbjct: 183 PHNLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIYGVDGARDALLTGRGRIVIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  SG REQI+VTEIPYQVNKA M++K A+LV +K+I  I+D+RDESDR G R+V
Sbjct: 243 AKAEIE-ESGGREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELKR A  +V+LN+LY+YTSLQS FS+N + L   +P    L  ++  FV FR EVVVR
Sbjct: 302 YELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVDGRPRLLNLREMITEFVKFRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ IIR S +PE AR  LM+R           
Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q+RAI+E+RL +LTGL +D +R E   L   I +  DIL
Sbjct: 411 ---------------FALSDLQSRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + IIK EL+ ++ +    RR+RI     +M+ ED I  E++V+T+SH GY+KR 
Sbjct: 456 AREERRMQIIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++ Q RGG G  G   RD+DF+  LF+ + H  +L F+  G  +  +V+ +P G+ 
Sbjct: 516 NLDEFKVQSRGGMGSKGSTTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L++ Q ++I   +   +  D+    N ++V  TK G +++  L  + +  
Sbjct: 576 TAKGRAIQNLLNIEQDDKIKAYVKVKDLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L        N+++L TK G+ +RF  + +R    RN+ GVR ++L
Sbjct: 636 ANGINAITIRENDELLEARLTDGTNEMVLATKAGRAIRFNEAKVRPMG-RNASGVRAVTL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+V+ M  V     D  E I  +      +R    D E+   +             
Sbjct: 695 QNDTDEVVGMICV----KDNTETIMVVSEKGYGKRSFLNDPEDGEPV------------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                       +RI+NR GKG++  +++  ++ G L+A+  V 
Sbjct: 738 ----------------------------YRITNRGGKGVKTINIT--DKTGPLLAIKTVA 767

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D D +++++  G  IR+ ++ IR+  RA +GV + +      + +V R+  S
Sbjct: 768 DEDDLMIITKAGVTIRMHIDGIRVMGRAAQGVRLINLKGTAAIAAVARVPRS 819



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 108/261 (41%), Gaps = 20/261 (7%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              V+ + +V  +  G +K+  L  Y   R    G + + +R+ D + +  +      ++
Sbjct: 606 KEYVQNNFIVMCTKEGIIKKTSLEAYSRPR--ANGINAITIRENDELLEARLTDGTNEMV 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +    ++      A G   + +   N  + +  ++   +     N   ++ 
Sbjct: 664 LATKAGRAIRFNEAKVRPMGRNASGVRAVTL--QNDTDEVVGMICVKD-----NTETIMV 716

Query: 651 ATKHGNVRRNKLSDFIQ-------INRSGKIAMKLDSRDE---ILSVETCTQENDILLTT 700
            ++ G  +R+ L+D           NR GK    ++  D+   +L+++T   E+D+++ T
Sbjct: 717 VSEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINITDKTGPLLAIKTVADEDDLMIIT 776

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           K G  +R  I  IRV   R + GVR I+L     + ++A V  +D + +        ++ 
Sbjct: 777 KAGVTIRMHIDGIRVMG-RAAQGVRLINLKGTAAIAAVARVPRSDEEEEFEGEDGIIVAG 835

Query: 761 QRRLISGDTEEITSLKNDSSV 781
               IS D+ E      D++ 
Sbjct: 836 PVEEISDDSTEPDDSTEDTTE 856


>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
          Length = 843

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/892 (40%), Positives = 526/892 (58%), Gaps = 65/892 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA-HFLL 143
           YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL+      LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+  +TVDF  N+DGS QEP V+ AR P +L+NG  GIAVGMATNIP HNL E++DG +
Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT---- 259
           A+I NP++    L   + GPDFPTG  ILGR GI+  Y TGRGS+ +RGV+ IE      
Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQILGRRGIREMYETGRGSVTMRGVAAIETVEAKG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DR+ +++TE+PYQ NKAA++E+IAELV +K++  IAD+RDESDR G R+VIEL+R A 
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + RRT+YLL K
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVNGEPVLLTLRKMLQVFLDFRVETIERRTRYLLRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R H+L+GL IA+ NLD ++ +IR + +  +AR EL+++                   
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DIL+ + R+ G
Sbjct: 402 -------FGLSEVQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVYG 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I  EL  ++   D+PRRT I++    +ED D I  E  VV ++  GY+KR+P+S + A 
Sbjct: 455 LITDELGVIRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG +G++G   + E+ V      + H S+L FS  G VY    +R+P+ S  A+G  ++
Sbjct: 515 SRGTRGKAGTKTQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+++   E      +  +V  T  G V+R +LS F  I  +G IA+ L+
Sbjct: 575 QLLPIPREEQITSLLAVSE---FTEDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISM 738
             D +  V      + +L+ ++ G  + F +S   +   GR + GVR ++L  GDQ++SM
Sbjct: 632 EGDALTWVRLAQPGDSVLIGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPGDQLVSM 691

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++    AD  E                 DTEE+                       +  
Sbjct: 692 DVLPVELADRVEGSSAASD--------EDDTEEVA--------------------PSEGP 723

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           ++L  S  G GKR     FRI  R+G G+RA    +  ++  LV +  +   ++++LVS+
Sbjct: 724 WVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFRRDGDV--LVGLRVLGAGEELLLVSE 781

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +G ++R+  + +   SRA  GV +      +R+  V  +  +   DE    +
Sbjct: 782 RGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVVLVPPALEEDEESGED 833


>gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815]
 gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815]
          Length = 859

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/853 (42%), Positives = 528/853 (61%), Gaps = 37/853 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF+PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL E+VD C  
Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +VI
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVI 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSHFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  A++ELM RSW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATSGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + +Y + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL ++K E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITSIIFDELTTIKSEFGDERRSKIEMNATELNTEDLITPQDMVVTMSHSG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVYWLKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E  +   + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L  G  VI++ +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLEDGQSVIALLVAGDEQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGK 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +   Q        I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVDPEAQ--------IMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAVFPVNDNDQ 852
            L  +     +  
Sbjct: 829 GLQQIAEAEADVD 841


>gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
 gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
          Length = 858

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 542/910 (59%), Gaps = 69/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH +L DL K+TVDF  NYDG+ + P VL  R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EVV  C+A+++NP+I +D LME I GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAIISGRAGILQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I   + +R+ I++ EIPYQ+NKA ++E+IAELV+EK+I  I++LRDESD+ G R
Sbjct: 243 RAKAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRG   DV+LN LY  T LQS+F +NMVAL   +P+   L  I+ AF+  R EVV
Sbjct: 303 VVIELKRGEMGDVVLNNLYAQTQLQSVFGINMVALENGQPKVMNLKEIIDAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT YLL KAR+R H+L GLAIA+AN+D ++ +I+ SP+P  AR  L+ + W+  D+  
Sbjct: 363 TRRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             DG   LS  Q +AILELRL RLTGL  + + NE     
Sbjct: 423 MLEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI + L IL    RL  +I++EL  V +E    R T IV+   D+  ED I  ED VVT
Sbjct: 483 KEIADYLHILGDSDRLKQVIREELEEVVEEFGDERLTEIVDSQHDLSVEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PLS Y+AQRRGG G+S   ++DEDFV  L + STH+++L F++LG VY  
Sbjct: 543 ISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+   Q+RG+                                        V    
Sbjct: 603 KVYQIPVAGRQSRGRP--------------------------------------MVNLLP 624

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L    ++               IL V   T+++ I + T  G   +  ++    F+   S
Sbjct: 625 LDPGERVTS-------------ILPVAEYTEDHYIFMATAKGIVKKTALTD---FSRPRS 668

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VG+R + LA+ D ++  AI  H ++D        K +    + +         ++     
Sbjct: 669 VGLRALELAEDDVLVGTAIT-HGESDVMLMSSAGKAVRFAEQDVRPMGRTARGVRG--IR 725

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            G+  E     +  +  ++LT S  G+GK+T + +F    R  KG+ A   +  N  G L
Sbjct: 726 MGDEDEMIALIIPQEGSYVLTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRN--GPL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-S 900
           V    V + D+++L+S++GT++R  V+EI    R T+GV +    + E +V + +I E  
Sbjct: 784 VGAVQVGEADELMLISNQGTMVRTRVSEISTLGRNTQGVRVIRLKEGEELVRITQIEESD 843

Query: 901 EIVDEAESTE 910
           E+  EAE+ E
Sbjct: 844 ELPSEAEAAE 853


>gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
 gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
          Length = 905

 Score =  742 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/862 (43%), Positives = 538/862 (62%), Gaps = 36/862 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             ++  K    +S+  EM+ S+L YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   W
Sbjct: 9   DQDQFAKETVPISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVW 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y+K AR+ G+VMGKYHPHG++AIYD + RMAQD+SLR  L++GQGNFGSVDGDPPAA
Sbjct: 69  NRPYLKSARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL+K A  ++ D+ KDTVDF PNYDGS  EP VL A+ PN+L+NG  GIAV MA
Sbjct: 129 MRYTEIRLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EVV  C+ +++NPD  +D L+E I  PDFPTGA+I G  G++  Y TGRG 
Sbjct: 189 TNIPPHNLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGALIYGVAGVREGYRTGRGR 248

Query: 248 IVIRGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +V+R  +H E     G+R+ I+V EIPYQVNKA + +KIAELV EK+I  I+D+RDESD+
Sbjct: 249 VVMRAKTHFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDK 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG RVVIELKRG +A+V+LN L++ T LQ  F +NMVAL   +P    L  +L+AF+A R
Sbjct: 309 QGMRVVIELKRGENAEVVLNNLFKLTQLQDSFGINMVALVDGQPRLLNLKQVLEAFLAHR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT Y LNKARDR H+L GLA+AV N+DE++ +I+ SP P  A+  L+ R+W A 
Sbjct: 369 REVVTRRTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKERLLARTWAAG 428

Query: 426 DIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
              ++++              D +  +  DGT  LSEVQ   IL++RL RLTGL ++ I 
Sbjct: 429 IAAEMVERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIV 488

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDE 530
            E   +   I + LDIL+  +R+  II+ EL  V +E       PRR++I     +++ E
Sbjct: 489 TEYREVVDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIE 548

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  +DMVVT+S+ GY+K  PLS YR+QRRGG+G+     +D+D+V  LFI +TH ++L
Sbjct: 549 DLITPQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTIL 608

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G VY  KVW +P GS  +RG+ ++N+  L + E+IT ++P    ++  +  YV  
Sbjct: 609 CFSDRGRVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPI---KTFDDEHYVFM 665

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  LSDF    ++G IA+ LD  D ++       E+D++L +  G+ VRF  
Sbjct: 666 ATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSE 725

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRR 763
             +R    R + GVRG++L +G +VI+M +       VL A  +   +   +   +   R
Sbjct: 726 GDVRAMG-RTARGVRGMALEEGQKVIAMLVADDERRSVLTATENGYGKRTPLIEHTRHGR 784

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
              G     +S +N   V   + EE           I+ ++  G   RT   + R   R+
Sbjct: 785 GTKGMIAIQSSERNGRMVAAILVEE--------GDEIMLITTGGVLVRTRVDEIREMGRA 836

Query: 824 GKGIRATDVSKINEIGALVAVF 845
            +G+    V + + +  +  V 
Sbjct: 837 TQGVTLIGVEEGDTLSRVQRVV 858



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 14/228 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        E  V   + LG VK+  LS +   R+   G   V + + D++    
Sbjct: 646 EKITVVLPIKTFDDEHYVFMATSLGTVKKTALSDFSNPRKA--GIIAVDLDEGDYLIGAA 703

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V+ FS  G   +     +      ARG   +  ++L +G+++  ++   +DE 
Sbjct: 704 VTDGEHDVMLFSDAGKAVRFSEGDVRAMGRTARG---VRGMALEEGQKVIAML-VADDE- 758

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  L +  +  R   G IA++       +++     + ++I+L
Sbjct: 759 ---RRSVLTATENGYGKRTPLIEHTRHGRGTKGMIAIQSSERNGRMVAAILVEEGDEIML 815

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            T  G  VR  +  IR    R + GV  I + +GD +  +  V+ +D+
Sbjct: 816 ITTGGVLVRTRVDEIREMG-RATQGVTLIGVEEGDTLSRVQRVVGSDS 862


>gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
 gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
          Length = 938

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/911 (40%), Positives = 542/911 (59%), Gaps = 18/911 (1%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              ++        I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +  
Sbjct: 17  PPGDDGTRFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTP 76

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
               VKCA+ISG+  G YHPHG + IY  L RMAQ+W++R +LI+ QGNFGS+ G PPAA
Sbjct: 77  GAPRVKCAKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAA 136

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  +L+DL  DTVDF P YD   QEP VL  R+PN+LVNG  GIAVGMA
Sbjct: 137 MRYTEARLSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMA 196

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+IP HNLGEV +  V VID+P++ L  L EII+GPDFPTG  I GR GI+  Y  GR +
Sbjct: 197 TSIPPHNLGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGGTICGRAGIRRGYRDGRST 256

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           IV+R  + IE+   DR +I++TEIPYQ  +  ++EKIAELV E+RI  I+ + D SD ++
Sbjct: 257 IVLRAKTRIEEHKKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKE 316

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +VI++KR A   V+LNQLY+++ LQ   S+ ++AL   KP   +L  +L+ F+  R 
Sbjct: 317 PVHLVIDIKRDADPYVVLNQLYQFSPLQDSISIILLALVDGKPRELSLKELLEEFLRHRV 376

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT++LL+KAR R H + GL +A+AN+DE++RIIR S     A+  LM     A+ 
Sbjct: 377 TVIRRRTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAM 436

Query: 427 IKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           ++  +  +         G+  T  L+ VQ+ AIL + L +L  L ++ +  E   L  EI
Sbjct: 437 MQRALGEEGFAMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEI 496

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVS 543
            E L IL+  + +  +IK+EL+++  +    RRT I  E + D+  ED I  E MVV++S
Sbjct: 497 AEYLRILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMVVSIS 556

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR P S YRAQRRGGKG  G    DED +  LF+ STH  +LFF++LG VY +KV
Sbjct: 557 HRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKV 616

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP  S ++RG+A++N+L+L++GE+I   +   + +      +++ AT+ G V+++ L 
Sbjct: 617 YDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQ--QGHFLMMATRKGLVKKSPLE 674

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+ +  + G IA+KL   DE++ V      ++++L+T  G  +RF  S  R    RN+ G
Sbjct: 675 DYSRPKKGGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPMG-RNTSG 733

Query: 724 VRGISLAKGDQVISMAIVLHADADY----DERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           V+GISLA GD ++ M +V   DA      +       +      ++     +  S+   S
Sbjct: 734 VKGISLASGDSLVGM-VVADPDATLLTVCENGYGKRTNFGPNAEVVGPPPADDDSIDTGS 792

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
               +   E                ++G  + +S   +R   R GKG+R    +  N  G
Sbjct: 793 IDTSSAEAETVVAEPPAPAEEAAAEDEGDEEGSSGSRYRTQRRGGKGLRDIKTTTRN--G 850

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++AV  V+D +++++++ +G L R+   EI+   R T+GV I S   D+++V+V R+  
Sbjct: 851 TVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRIMSLDDDDKLVAVVRVPR 910

Query: 900 SEIVDEAESTE 910
               DEAE T+
Sbjct: 911 ----DEAEVTD 917


>gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 827

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 534/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEKDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SE G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 709 -----------ADDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+  +   
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
          Length = 819

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/886 (42%), Positives = 540/886 (60%), Gaps = 82/886 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M ++G+ ++K Y K AR
Sbjct: 12  KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG++A+Y A+ R+AQ+++ R LLI G GN+GS+DGD  AA RYTE R+ 
Sbjct: 72  IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K ++ LL+D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HN G
Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV DG VA+I+NPDI +D L+  I GPDFPTG +I GR+GI  AY TGRG + + G   I
Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGIINGRSGIIEAYKTGRGKVRVAGKIKI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E++   +E I+V E+PYQVNKA ++E+IAELVR K++  I+DLRDESDR G RVVIELKR
Sbjct: 252 EESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELKR 311

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  +++ILN LY+YT LQ+ F +  +AL    P    L  IL+ ++  R  VV RRTK+ 
Sbjct: 312 GEESELILNSLYKYTDLQNTFGIIFLALVDNAPRVLNLKEILQNYLKHRYSVVTRRTKFE 371

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+KA  RAH+L G  IA+ N+DEV++IIR S +   A+ +LM                  
Sbjct: 372 LDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLMA----------------- 414

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        SEVQ +AIL++RL RLTGL R  I  E   L + I+E   ILS   +
Sbjct: 415 ---------GFAFSEVQAKAILDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDK 465

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +  IIK+E+  +K++   PRRT I +  +++  ED I  E++VVT++  GYVKR P+ VY
Sbjct: 466 IYAIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVY 525

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG G S   + ++D + D++I     S+L F++ G V+  KV+ +P  S QARG+
Sbjct: 526 RAQKRGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGR 585

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + NI+ L + E ++TI+   E E   +   + F T+ G V++  L  F  IN++G  A+
Sbjct: 586 LISNIIKLQEDEMVSTIIKVREFEKDKD---IFFVTRKGVVKKTNLELFASINKAGIKAI 642

Query: 677 KLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            L   DE++     +    ++I L T+ G  +RF  + +R    R + GV+GI+L   D 
Sbjct: 643 GLKDDDELIFAGLTSGTLKDEIFLATREGFAIRFSENDVRSMG-RTASGVKGITLRPEDV 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +++ AI+  ++                                                 
Sbjct: 702 IVAGAIIYASED------------------------------------------------ 713

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           L  + ILT+SE+G+GKRT   ++R+ +R GKGI  T++ K  + G +  V  V+D+ +I+
Sbjct: 714 LSGKTILTISEEGYGKRTKLEEYRLQSRGGKGI--TNLKKNTKTGKISDVKIVDDSSEIM 771

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++ +GTLIR  VN I I  RAT GV I    ++E+V S  +I   
Sbjct: 772 LITSEGTLIRTQVNSISIIGRATSGVRIMKVRENEKVASTVKITPE 817



 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 106/280 (37%), Gaps = 12/280 (4%)

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           + E    ++   E ++  ++   ++A     V++ K  DF    R+     +++   E  
Sbjct: 443 EEEYKELMLLIEELKAILSDPDKIYAIIKEEVKKIK-EDFSDPRRTEIRDARVEIGIE-- 499

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             +    E  ++  T  G   R PI   R    R  +GV   ++ + D +  M I  + D
Sbjct: 500 --DLIKDEEVVVTLTDKGYVKRTPIDVYRA-QKRGGIGVSATNILEDDIIKDMYIAKNLD 556

Query: 746 A---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           +      +   +   +             + S       +  +S         K++ I  
Sbjct: 557 SLLIFTTKGKVHDIKVYEIPEASKQARGRLISNIIKLQEDEMVSTIIKVREFEKDKDIFF 616

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+ KG  K+T+   F   N++G  I+A  +   +E+     +      D+I L + +G  
Sbjct: 617 VTRKGVVKKTNLELFASINKAG--IKAIGLKDDDEL-IFAGLTSGTLKDEIFLATREGFA 673

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           IR   N++R   R   GV   +   ++ +V+   I  SE 
Sbjct: 674 IRFSENDVRSMGRTASGVKGITLRPEDVIVAGAIIYASED 713



 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 108/260 (41%), Gaps = 24/260 (9%)

Query: 658 RRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           RR K        R+  +    + LD+ DE++          I+  ++ G   +  + A  
Sbjct: 366 RRTKFELDKAEKRAHILEGFKIALDNIDEVI---------KIIRGSQDGNEAKDKLMAGF 416

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            F+   +  +  + L +   +    I                 +S   ++ +   EE+  
Sbjct: 417 AFSEVQAKAILDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIYAIIKEEVKK 476

Query: 775 LKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +K D      + +     E   ++L   E+ ++T+++KG+ KRT    +R   R G G+ 
Sbjct: 477 IKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRAQKRGGIGVS 536

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
           AT++ + +    +  ++   + D +++ + KG +  + V EI  AS+  +G     I   
Sbjct: 537 ATNILEDD---IIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLISNIIKL 593

Query: 886 AKDERVVSVERIRESEIVDE 905
            +DE V ++ ++RE E   +
Sbjct: 594 QEDEMVSTIIKVREFEKDKD 613


>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
          Length = 849

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/907 (41%), Positives = 545/907 (60%), Gaps = 90/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V + + M+  Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   DDKIFDKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGS+DGD  AA 
Sbjct: 62  KPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  ++ D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E +DG + +ID     N +  ++ LMEII+GPDFPTGA+ILG+ GI  AY T
Sbjct: 182 NIPPHNLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMILGKNGINQAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R V+ IE     R +IV TE+PY VNKA ++EKIAELV++KRI  I+DLRDES
Sbjct: 242 GRGKLKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G RVVIELK+ A+ +V+LNQLY++T LQ  + V M+AL   +P    L  +L+ ++ 
Sbjct: 302 SREGLRVVIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQPMILNLKQMLELYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT++ LNKA +RAH+L GL IA+ ++DEV+ IIR S N   A+  LM+    
Sbjct: 362 HQEEVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLME---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T  L+EVQ +AI+++RL  LTGL R+ I NE N L   
Sbjct: 418 ----------------------TFGLTEVQAQAIVDMRLRALTGLEREKIENEYNELMKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+    LLG+I++E+  ++D+    R+T +     ++  ED I RE+ V+ ++
Sbjct: 456 IGELKAILADEKLLLGVIREEIKLIRDKYGDDRKTSLGVDDDEITVEDLIKRENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGG+G  G+   DED +T+L + +TH  +LFF++ G V++ K 
Sbjct: 516 QLGYIKRMTMDNFRSQNRGGRGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG ALIN+L L  GE++T  +P    E   N+ Y+  ATK+G V++  + 
Sbjct: 576 YEIPEASRIARGTALINLLQLEPGEKVTATIPL---EKYENDKYLFMATKNGMVKKTSIM 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++I + ++G +A+ L   DE++ V+   + + I L ++ G  + F    +R   GR S+G
Sbjct: 633 EYINVRKTGLLAIGLREDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRA-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ L   D ++ M +    +A                                     
Sbjct: 692 VIGMDLDADDLIVGMQVSSQGEA------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L VSEKG GKRT   +F + NR GKG++   ++  ++ G +V 
Sbjct: 715 ----------------VLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYKIT--DKTGLVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN  D++++++  G +IR+PV  I I  R T GV +    +   V S+ +IRE    
Sbjct: 757 VKCVNAEDELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVVASIAKIREDMKD 816

Query: 904 DEAESTE 910
           DE  S E
Sbjct: 817 DEETSDE 823



 Score = 41.8 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI-IKQELLSVKDELDT 514
           +I+E    R TGL    +R E + L          L       G+ I  +  +V+     
Sbjct: 630 SIMEYINVRKTGLLAIGLR-EDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRATG-- 686

Query: 515 PRRTRI------VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
             RT +      ++    +       + + V+ VS  G  KR  L  +  Q RGGKG   
Sbjct: 687 --RTSMGVIGMDLDADDLIVGMQVSSQGEAVLIVSEKGLGKRTMLEEFNVQNRGGKGLKC 744

Query: 569 VVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
             + D+   V  +  V+    ++  ++ G + +  V  + I      G   + ++ L++G
Sbjct: 745 YKITDKTGLVVGVKCVNAEDELMIITTGGIIIRMPVEGISILKRITSG---VKLIQLDEG 801

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +I    ED           + + G       +D +  +
Sbjct: 802 SVVASIAKIREDMKDDEETSDEQSEEDGMTEEVLENDSVDNS 843


>gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514]
 gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514]
          Length = 893

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/925 (39%), Positives = 551/925 (59%), Gaps = 87/925 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + +  +++ DE++NS+L Y+++VI+ RA+PD+RDGLKP  RRILF M  + +  N+++ 
Sbjct: 21  NEKVAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDLSLYPNRQHR 80

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I G+  G YHPHG A IY  L  MAQ W++R  LI+GQGNFGS++GDPPAA RYTE
Sbjct: 81  KCAKICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGDPPAAMRYTE 140

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+      L+ D+ KDTVDF PNYD + +EP V  A +PN+LVNGG GIAVGMATN+  
Sbjct: 141 ARMTHLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIAVGMATNMAP 200

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG  A ID+P I +  LM+ I+GPDFPTG ++ G  GIK  +ATGRG I +RG
Sbjct: 201 HNLGEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMVCGLEGIKKYFATGRGQIKMRG 260

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E+    REQIV++ +P+ VN A + E+IAELV EK I DI+ LR+ESD     +VI
Sbjct: 261 KVDVEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNESDENTR-IVI 319

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR AS  V++N LY +TSL+S F+VN +A++  +P+   L  ++ A++  R EV++RR
Sbjct: 320 ELKRDASPKVVINNLYNHTSLESSFAVNALAIDHGRPKTLGLKDLINAYIEHRREVIMRR 379

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA +RA  L G  IA++N+DE +RIIR S N E AR +L+   +N   ++ +  
Sbjct: 380 TRFELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFDFNRQQVEQIGI 439

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI D +    ++G    SE Q  AIL+LRL +LTGL  D +R E  +L   IK+ LDIL+
Sbjct: 440 LIRDEARL--TNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIERIKDLLDILA 497

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             SR+L IIK EL  +K++  TPR T +V    +M  ED I  E +++T++H G +KR  
Sbjct: 498 KESRVLEIIKAELREIKEKYATPRMTDLVPDEGEMALEDLITNEGVIITITHGGLIKRTN 557

Query: 553 LSVYRAQRRGGKGRSGVVMRD--------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +S YRAQRRGGKG  G+  R+        +DF+  LF   TH  ++FF++ G V+ E+V 
Sbjct: 558 VSSYRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTHDYLMFFTNSGRVFVERVH 617

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM-------PFPEDESSWNNLYVVFATKHGNV 657
            +P  +  ++G+++ N+L L   E+I  ++       P  ED++   +  + FAT+ G V
Sbjct: 618 EIPDMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKEDQTWTQSGELFFATQQGTV 677

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ------------ENDILLTTKLGQC 705
           ++  L+DF  + + G IA+ ++  D ++ V+                  D++L T+ G  
Sbjct: 678 KKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLITREGMS 737

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  S +R    RN+ GVRGI+L K D V+++A+++                       
Sbjct: 738 IRFAESNVRSMG-RNATGVRGINLEKTDAVVALAVLVP---------------------- 774

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  +L   E G GKRT   ++R+ +R GK
Sbjct: 775 -------------------------------DATLLVAGENGIGKRTDFGEYRVQSRGGK 803

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI     +  ++ G +V    V DND+I+L+++ G ++R+ V +IR A R T+GV + + 
Sbjct: 804 GIITMKTN--DKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDIREAGRNTQGVKLINL 861

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
              +++ ++  +  SE  +EAE+ +
Sbjct: 862 EAGDKLQAISPVI-SEEKEEAETGD 885


>gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
 gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
          Length = 954

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 547/900 (60%), Gaps = 69/900 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 22  ELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 81

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 82  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 141

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 142 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 201

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 202 PPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 261

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 262 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 321

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 322 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREV 381

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 382 VTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVE 441

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  +LS  Q +AIL+LRL RLTGL  + +  E   
Sbjct: 442 AMVERAGADACRPENLDPQYGL-RDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 500

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL++  RL+ +I++EL  VK +    RRT I+E  LD+   D I  E+ V
Sbjct: 501 ILTQIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERV 560

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGG+G++   +++ED+V  L + ++HT++L FSS G VY
Sbjct: 561 VTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVY 620

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  +RG+ L+N+L L++GERIT ++                         
Sbjct: 621 WLKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLV 680

Query: 638 ---------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                          +++      Y+  AT  G V++  L  F +   SG IA+KL+  D
Sbjct: 681 IEHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGD 740

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI-- 740
            +++        ++++ +  G+ +RF  S +R+   RN+ GVRG+ L +G ++ISM I  
Sbjct: 741 TLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMG-RNARGVRGMRLPEGQRIISMLIPE 799

Query: 741 ----VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
               +L A      +   M+    + R   G    +T+ +N   V             L+
Sbjct: 800 PDAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLV--------GAVQVLE 851

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854
            + I+ +S++G   RT   +     R+ +G+    +SK      LV +  V +   ++++
Sbjct: 852 GEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGE---HLVGLERVQEPSEEEVL 908


>gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 869

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/897 (39%), Positives = 525/897 (58%), Gaps = 88/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E  I  + I  EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M +MG  +++
Sbjct: 2   EDIEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQ 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K A+  GEV+ KYHPHG++A+Y  L R+AQ W+LR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E +DGCVA ID     ++  LM  I+ PDFPTG  I G  G+K A+ TGRG I
Sbjct: 182 MAPHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIYGYAGVKEAFETGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-G 307
           V+R  + IE  S  RE I+VTEIPYQVNKA ++  IA+LV E+RI  I+++ DES  + G
Sbjct: 242 VLRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A+A V+LN L++ T LQS F+VN +AL   +P    L  ++  FV  R +
Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+ + L KAR+RAH+L GL IAV N+DEV+ IIR S N + A+  L +R       
Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q RAI+++RL  LTGL  D +R E + L   I+  
Sbjct: 415 -------------------FELSELQARAIVDMRLRALTGLESDKLRAEFDELMKTIQYL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             +L+  + L+ ++K ELL VK++   PRRT IV    +   ED    ++M++T+SHLGY
Sbjct: 456 EGLLADDNLLMQVVKDELLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR PL  +R+Q RGG G  G   R+EDF+  ++  S H ++L F++ G  +   V+++P
Sbjct: 516 IKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFP---EDESSWNNLYVVFATKHGNVRRNKLSD 664
            G+   +G+A+ NIL++   +RIT  +      +D     + Y+VFAT  G +++  L  
Sbjct: 576 EGAKSTKGRAIQNILNIEADDRITACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +      G  A+KL+  D ++SV     + +ILL  K G+ +RFP S +R    R + GV
Sbjct: 636 YSNPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSMG-RVTTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +G  D ++ M  +   + +                                   
Sbjct: 695 RGMILDEGGEDAIVGMVALKDPEKE----------------------------------- 719

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            IL VSE G+GKRT+   +RI+NR GKG++   +++  + G+LV
Sbjct: 720 ----------------TILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITE--KTGSLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIR 898
               V D   +++++  G  IR+P++ I +  RAT+GV + +  ++ + + SV  + 
Sbjct: 762 DFRSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGVKLINLSSRGDEIASVCIVA 818



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/289 (20%), Positives = 123/289 (42%), Gaps = 22/289 (7%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R T  +  +  ++ +   V    +V  +  G +K+ PL  Y   R   KG   + + 
Sbjct: 594 ADDRITACI-RIKKLQKDPEFVASHYLVFATLQGMIKKTPLEAYSNPRS--KGVFAIKLN 650

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK---ALINILSLNQGER 629
           + D V  + + +  T +L  +  G        R P    ++ G+    +  ++    GE 
Sbjct: 651 EGDSVVSVRLTNGKTEILLANKGGR-----AIRFPESKVRSMGRVTTGVRGMILDEGGED 705

Query: 630 -ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEIL 685
            I  ++   + E       ++  ++ G  +R  L  +   NR GK        +    ++
Sbjct: 706 AIVGMVALKDPEKE----TILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITEKTGSLV 761

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHA 744
              + T E D+++  + G  +R P+S+I V   R + GV+ I+L ++GD++ S+ IV   
Sbjct: 762 DFRSVTDELDLMIINRSGVAIRMPMSSINVIG-RATQGVKLINLSSRGDEIASVCIVASE 820

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQE 792
           +A+ ++ +        +  L S  D+ +   +++D   + + +EE   E
Sbjct: 821 EAEAEKALLKEGASDEEVNLTSEIDSNDYEEIEDDLQEQQSKTEEDKTE 869


>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
 gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
          Length = 820

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/891 (41%), Positives = 544/891 (61%), Gaps = 87/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 6   EKNQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAA 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+R+ L++GQGNFGS+DGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD +  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L E++D  V +I+NP  +L  +ME I+GPDFPTG +I G+ GI NAY TGRG I +
Sbjct: 186 PPHRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIFGKQGILNAYKTGRGRIKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK    RE IV+ EIPYQVNKA ++E+IA++VREK++  I+++RDESDR+G RV
Sbjct: 246 RAKTHIEKVKN-REVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+   +D+ILN LY+ T ++  F + ++A+   +P+ FTL+ +L  F+  R  +V+
Sbjct: 305 VIELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKEPKVFTLLELLHLFLNHRRTIVI 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA+ RAH+L GL  A+ N+DEV+  I+ S +  TAR  LM++          
Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AIL+++L RLTGL R+ + NE   L  EI+    I
Sbjct: 415 ----------------FELTEIQANAILDMKLQRLTGLEREKLENEYKELMEEIERLSAI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  +L  IIK ELL +K++  TPR T IVE   +++ ED I  E MVVT++H GY+KR
Sbjct: 459 LKSEEKLNEIIKTELLEIKEKFTTPRLTEIVESYEEIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPL  Y  Q+RGGKG++ V   ++DF+ D FI +TH +++F +  G +Y  KV+++P   
Sbjct: 519 VPLKQYEKQKRGGKGKTAVTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAG 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+L L   E+I  I+P  +      +  + F TK+G V+R  L++F  I  
Sbjct: 579 RTAKGKAVVNLLQLQPDEKIKAIIPTTD---FSEDKSLAFFTKNGIVKRTNLAEFSNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE++  +    E   + + TK G C+RFP+  +R    R++ GV GI  
Sbjct: 636 KGVRAITLDESDELVEAKIVKPETKWLFIITKKGMCIRFPVHDVREMG-RSARGVTGIRF 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +GD V+                                                    
Sbjct: 695 KYEGDYVVGA-------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + +  +EQ +LTVSEKG GKRT + ++R  +R GKG+ A  ++  ++ G +V V  V 
Sbjct: 705 --ETIAQEEQELLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLT--HKTGDVVGVVTVE 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +N  +++++  G +IRV +  IR A R T GV+I      ++VVS+ +  +
Sbjct: 761 NNKDLMVLTSSGKMIRVDMESIRKAGRNTSGVMIVRLESGDKVVSIAKCPK 811


>gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 935

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/900 (42%), Positives = 547/900 (60%), Gaps = 69/900 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVE 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++            D  Y +  DG  +LS  Q +AIL+LRL RLTGL  + +  E   
Sbjct: 423 AMVERAGADACRPENLDPQYGL-RDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL++  RL+ +I++EL  VK +    RRT I+E  LD+   D I  E+ V
Sbjct: 482 ILTQIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+ Y+AQRRGG+G++   +++ED+V  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  +RG+ L+N+L L++GERIT ++                         
Sbjct: 602 WLKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLV 661

Query: 638 ---------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                          +++      Y+  AT  G V++  L  F +   SG IA+KL+  D
Sbjct: 662 IEHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGD 721

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI-- 740
            +++        ++++ +  G+ +RF  S +R+   RN+ GVRG+ L +G ++ISM I  
Sbjct: 722 TLIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIMG-RNARGVRGMRLPEGQRIISMLIPE 780

Query: 741 ----VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
               +L A      +   M+    + R   G    +T+ +N   V             L+
Sbjct: 781 PGAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLV--------GAVQVLE 832

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854
            + I+ +S++G   RT   +     R+ +G+    +SK      LV +  V +   ++++
Sbjct: 833 GEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGE---HLVGLERVQEPSEEEVL 889


>gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 898

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/917 (36%), Positives = 511/917 (55%), Gaps = 108/917 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC
Sbjct: 20  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKC 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR
Sbjct: 80  SRVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 139

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP+HN
Sbjct: 140 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHN 199

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + E+ +G    +++P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 200 MREIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 259

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 260 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQR 318

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY++T LQ  F  NM+AL    P   +L   ++ ++  + +VV
Sbjct: 319 LVLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQLQVV 378

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  ++EV+ +IR SP+ E AR  LM           
Sbjct: 379 ERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLMD---------- 428

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + ++Q  AIL ++L RL  L R  I +E   L   I++  D
Sbjct: 429 ----------------LLDVDQIQADAILAMQLRRLAALERQKIIDEHEELLRRIEDYND 472

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R   I+  E+  + D+    RRT+I+    +M  ED I  E++VVTV+H GY+K
Sbjct: 473 ILAKPDRQRKIVGDEMDEIVDKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGYIK 532

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P G
Sbjct: 533 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEG 592

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L L   E+I  ++   + +++    Y+V AT+ G +++ +L ++    
Sbjct: 593 SRDSKGQHVANLLQLGPDEKIQQVLSIKDYQTAS---YLVLATRSGKIKKTRLDEYDSAR 649

Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           + G IA++L                   DE++    C  +++I++ ++ G  V+F     
Sbjct: 650 QGGLIAVRLREIEGAFRTDKEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQ 709

Query: 714 RVF-AGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +   GR + GV+ +        D ++SM +V                            
Sbjct: 710 TLRPMGRQTAGVQAMKFRGKPGDDLLLSMDVVPQG------------------------- 744

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      +  +L V+ +GF KRT+  ++R+  R+G G++A
Sbjct: 745 --------------------------TDSDLLVVTNEGFAKRTALSEYRLQGRNGYGVKA 778

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ +    G L+    V ++DQ++ +   G +IR  V+EI+   R T+GV +    K +
Sbjct: 779 INLVEG--RGNLIGAIVVAEDDQVMAIMKSGKVIRSDVSEIKRTGRNTQGVTLAKPDKGD 836

Query: 890 RVVSVERIRESEIVDEA 906
            ++SV R  E+E  DE 
Sbjct: 837 EIISVARNAETEDQDEP 853


>gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 893

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/908 (37%), Positives = 506/908 (55%), Gaps = 93/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K
Sbjct: 21  ERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSK 80

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            +R+ G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC
Sbjct: 81  SSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 140

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP H
Sbjct: 141 KMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPH 200

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV  G    +++PD   + L+    E I GPDFPTGA ILGR GI++AY TGRGSI 
Sbjct: 201 NLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSIT 260

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
            R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G 
Sbjct: 261 QRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQ 319

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L G ++ +V+ + +V
Sbjct: 320 RLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVSHQIDV 379

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP  E AR  LM          
Sbjct: 380 IVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM---------- 429

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + E Q  AIL L+L RL  L R  I+ E + L   +K+  
Sbjct: 430 ----------------GLLDVDEAQAEAILSLQLRRLAALERLKIQEESDELRARVKDLR 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +I++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  ED+VVT++  GY 
Sbjct: 474 EIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP 
Sbjct: 534 KRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPE 593

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G   ++G+ + N+L+   GE I  +M   + + +    ++V AT+ G V++ +LS++   
Sbjct: 594 GGRDSKGQHVANLLAFQPGEEIAQVMELRDYDQAD---FLVLATRRGLVKKTRLSEYNSN 650

Query: 669 NRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNSV 722
              G IA+ L        DE++S    +   D+LL +  GQ +RF      +    R + 
Sbjct: 651 RSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRPTGRATS 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   +GD +++M +V  +  D D                                 
Sbjct: 711 GVTGMRFREGDYLLAMDVVDPSWQDAD--------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +  V+E G+ KRT+  D+ +  R G G++  ++ +    G LV
Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEA--RGNLV 778

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                +  D+++ +   G ++R  V E+    R T+GV        +R+++V R  E ++
Sbjct: 779 GALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARNTERDM 838

Query: 903 VDEAESTE 910
            +  ++ +
Sbjct: 839 EEAVDAAD 846


>gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3]
 gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 851

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/840 (42%), Positives = 517/840 (61%), Gaps = 27/840 (3%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + ++  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + L  G QVI+M +    +          Y K          G   +       S   G 
Sbjct: 717 MQLEDGQQVIAMLVAGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGK 776

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +       L   E  I+ ++  G   RT   + R   R+ +G+    + +  ++  L  +
Sbjct: 777 V---VAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 833


>gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 869

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/896 (45%), Positives = 601/896 (67%), Gaps = 37/896 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  V++  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++   WNK Y K A
Sbjct: 4   IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 64  RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +  + FLLDDL +++VDFR NYD S  EPVVL A++PN+LVNG  G+AVGMATN+PTHNL
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++ C   ++N ++  D L+++I+GPDFPTG +I+G  GIK ++ +GRGSI+IR  +H
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTH 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+T   +  I+V E+PYQVNKA ++E IA LV+EKR+  I+DLRDES+++G RVVIELK
Sbjct: 244 FEETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGAS +V+LNQL++ T LQ+ +S NMV L+  +P   +L  IL AF+A R+EV+ RRT++
Sbjct: 303 RGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTEF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR++A+VLV L +A+ N+DEVV I++ S + E A + L  + W   +  +L+  ++
Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELL--VE 420

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             S     +    LS  Q++AILE+++ R+T   +  +  E+++    +KEC  IL S +
Sbjct: 421 TISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEA 480

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMVVTVSHLGYVKRVPLS 554
            L  +I +EL  +K +    R++ I++ +  +  +ED I RE +VVT ++ GY+KRV +S
Sbjct: 481 VLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVHIS 540

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGGKGR    ++ ED +  +F++STH  +LFFSS G VYK K ++LPIG PQ+R
Sbjct: 541 NYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQSR 600

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+AL+NI  L   E IT+I+P      S +   ++F T  G V+RN +SDF  +  +GK+
Sbjct: 601 GRALVNIFDLADDESITSILPLK----SSDAENLIFLTAQGKVKRNSMSDFAYVPANGKV 656

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A++L+  D ++SV+T   E+ + ++T+ G+C+RF +  +RV   R+S GV+ I+L K D 
Sbjct: 657 AIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDDN 716

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            IS++I+       +++  YMK    +R     + E                        
Sbjct: 717 AISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHE------------------------ 752

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             EQF+LTV+E G+GK TSSY++RI+NR G GI     S+ N  G +V+ F V  ++ I+
Sbjct: 753 --EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNHIM 808

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           LV+++G +IR+  N I +  R T+GV +FS   +ERV SV  + E E  D++E+TE
Sbjct: 809 LVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863


>gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
 gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
          Length = 860

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/904 (38%), Positives = 545/904 (60%), Gaps = 91/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D+     I  V +   M++ Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 11  MPDDVF--DKTTTDRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 68

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS+R  L++G GNFGSV
Sbjct: 69  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSV 128

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  ++ D+ KDTVDF PN+D + +EP +L +RYPN+LVNG  
Sbjct: 129 DGDGAAAMRYTEARLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTT 188

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EVV+  V +IDN      + +++ +++II+ PDFPTG +ILG  
Sbjct: 189 GIAVGMATNIPPHNLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTR 248

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + AY TGRG +++R V++IE     + +IVVTE+PY VNKA M+ KIAELV+ K++  
Sbjct: 249 GAEEAYRTGRGKVIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDG 308

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  LRDESDR+G RVVIEL+   + +++LN+LY++T +Q  F + M+AL   +P+  ++ 
Sbjct: 309 ITALRDESDREGMRVVIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALVNNEPKVLSIT 368

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRTKY LNKA +R H+L GL IA+ N+DEV++IIR S     A+ 
Sbjct: 369 EMLKHYIKHQEEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKE 428

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R                            L++VQ +AI+++RL  LTGL RD +  
Sbjct: 429 QLMGR--------------------------FGLTDVQAQAIVDMRLRTLTGLERDKLEQ 462

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ R  LLG+I+ E+  + ++    R+++I +   D++ ED I  
Sbjct: 463 EHADLLKKIEELKAILADRKVLLGVIRTEISEIANKYGDDRKSQIGQDDSDIDTEDLIPN 522

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            + V+ ++ LGY+KR+ +  ++AQ RGGKG  G+   D D+V D+ + +TH  V+FF++ 
Sbjct: 523 VNTVIAMTSLGYIKRMSIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNT 582

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K +++P  S  +RG A++N+L L  GE+I+ ++P    E       +   TK G
Sbjct: 583 GRVYRLKAYQIPEASRTSRGMAIVNLLQLAPGEKISAMIPVKGFEDEEK--CLFMVTKKG 640

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++DF  + ++G  A+ L   DE++ V+T T++ ++ L TK G C+ F  S +R+
Sbjct: 641 TVKKTPITDFSNVRKTGLAAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRI 700

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R+S+GVRG+ L   D+++ M +    D+                             
Sbjct: 701 -TSRSSIGVRGMMLDDTDEIVGMQLNTQGDS----------------------------- 730

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L VSEKG+GKRT+  +F    R GKG++   +++ 
Sbjct: 731 ------------------------LLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITE- 765

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G ++ V  VND+++I+++++ G +I++ ++EI I  R T GV + +  K   V  + 
Sbjct: 766 -KTGNVIGVKAVNDDNEIMMITNAGIIIQLRMDEITIHGRVTSGVKMINLDKGVTVAKIA 824

Query: 896 RIRE 899
           ++RE
Sbjct: 825 KVRE 828



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +     E  +  V+  G VK+ P++ +   R+   G + + +RD+D + ++  V+  
Sbjct: 621 IPVKGFEDEEKCLFMVTKKGTVKKTPITDFSNVRKT--GLAAITLRDDDELIEVKTVTKD 678

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V   +  G         + I S  + G   +  + L+  + I  +      + +    
Sbjct: 679 AEVFLVTKNGMCIHFDESDVRITSRSSIG---VRGMMLDDTDEIVGM------QLNTQGD 729

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLG 703
            ++  ++ G  +R  L +F    R GK        ++   ++ V+    +N+I++ T  G
Sbjct: 730 SLLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITEKTGNVIGVKAVNDDNEIMMITNAG 789

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             ++  +  I    GR + GV+ I+L KG  V  +A V    +D D 
Sbjct: 790 IIIQLRMDEI-TIHGRVTSGVKMINLDKGVTVAKIAKVREKISDGDH 835


>gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 893

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/908 (37%), Positives = 505/908 (55%), Gaps = 93/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G      + K
Sbjct: 21  ERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSK 80

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            +RI G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ GQGNFG+     PAA RYTEC
Sbjct: 81  SSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 140

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP H
Sbjct: 141 KMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPH 200

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV  G    +++PD   + L+    E I GPDFPTGA ILGR GI++AY TGRGSI 
Sbjct: 201 NLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSIT 260

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
            R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G 
Sbjct: 261 QRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQ 319

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L G ++ +VA + +V
Sbjct: 320 RLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVAHQIDV 379

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP  E AR  LM          
Sbjct: 380 IVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM---------- 429

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + E Q  AIL L+L RL  L R  I+ E   L   +K+  
Sbjct: 430 ----------------GLLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLR 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +I++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  ED+VVT++  GY 
Sbjct: 474 EIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP 
Sbjct: 534 KRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPE 593

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G   ++G+ + N+L+   GE I  +M   + + +    Y+V AT+ G V++ +LS++   
Sbjct: 594 GGRDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD---YLVLATRRGLVKKTRLSEYNSN 650

Query: 669 NRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNSV 722
              G IA+ L        DE++S    +   D+LL ++ GQ +RF      +    R + 
Sbjct: 651 RSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRPTGRATS 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   + D +++M +V  +  D D                                 
Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +  V+E G+ KRT+  D+ +  R G G++  ++ +    G LV
Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEA--RGNLV 778

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                +  D+++ +   G ++R  V E+    R T+GV        +R+++V R  E ++
Sbjct: 779 GALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARNTERDM 838

Query: 903 VDEAESTE 910
            +  ++ +
Sbjct: 839 EEAVDAAD 846


>gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113]
 gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113]
          Length = 846

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/852 (43%), Positives = 535/852 (62%), Gaps = 20/852 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  + +  V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  LI+GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL AR PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++ C+A+ID+P + +  LM  I GPDFPT  ++ G  GI+ AY TGRG IV
Sbjct: 182 IPPHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIRGIQEAYLTGRGRIV 241

Query: 250 IRGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H+E   G  ++ I+VTE+PY VNKA +LEKI  LV++K+IV I  LRDESD+ G 
Sbjct: 242 MRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL+R    +V+LNQLY +T LQS+F +NMVAL   +P+   L   L+ F+  R+EV
Sbjct: 302 RMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEVFLRHRQEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAHVL GLAIA+ N+D ++ +I+ S +P  AR  L+ R W    + 
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           D++             +++Y +  DG   LS  Q +AILE+RL RLTGL +  I +E   
Sbjct: 422 DMLQRAGAASSPPEELEAAYGLQRDG-YRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQ 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           + I I E L+IL++  RL+ +I++EL+ + ++   PRRT I +  +D+  ED I  E++V
Sbjct: 481 VIIFISELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY
Sbjct: 541 VTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            +KV+ LP GS  ARGK  +N+L L +GERI T++   E E    + Y+   T  G V++
Sbjct: 601 WKKVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIREFE---KDKYIFMVTALGVVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L+DF +   SG IA+ L   D+++  +    E +I+L +  G+ +RF    +R    R
Sbjct: 658 TSLADFSRPRSSGIIALDLREGDQLVGADLTDGEQEIMLFSSGGKVIRFSERDVRPLG-R 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+G+ L    +VI++ I           + Y K  +     + G   +       +
Sbjct: 717 TARGVKGMELPSKHRVIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGKGIISIRTT 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              G +      E   KE  ++ +S  G   RT   +  +  R+ +G++  ++ +   + 
Sbjct: 777 PRNGAVVGAVQVE---KEDEVVLISNGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLV 833

Query: 840 ALVAVFPVNDND 851
            +     V D +
Sbjct: 834 GI--ERIVEDGE 843



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 59/322 (18%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETC 690
            +    ++       VV  +  G  +   L  +    R   GK A  +   D I  +   
Sbjct: 525 YVDLRLEDLIQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIA 584

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + +L  +  G+     +  +     R + G   ++L   ++   +  VL       +
Sbjct: 585 NTHDTLLCFSSRGKVYWKKVYEL-PQGSRIARGKPFVNLLPLEEGERINTVLSIREFEKD 643

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFG 809
           +  +M       +  S             +++    ++    +L   EQ I+  S  G  
Sbjct: 644 KYIFMVTALGVVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGEQEIMLFSSGGKV 703

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            R S  D R   R+ +G++  ++   + + AL+          I+  ++ G   R  + E
Sbjct: 704 IRFSERDVRPLGRTARGVKGMELPSKHRVIALIIAASGT----ILTATELGYGKRTAIAE 759

Query: 870 IRIAS---------------------------------------------------RATK 878
            R+                                                     R T+
Sbjct: 760 YRLQGRGGKGIISIRTTPRNGAVVGAVQVEKEDEVVLISNGGTLIRTPVDNISLMGRNTQ 819

Query: 879 GVVIFSTAKDERVVSVERIRES 900
           GV + +  + ER+V +ERI E 
Sbjct: 820 GVKLINLQEGERLVGIERIVED 841


>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
 gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
          Length = 859

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/896 (40%), Positives = 546/896 (60%), Gaps = 90/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +         +  V I  EMQ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+  
Sbjct: 15  MDEKNMEP----RSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQ 70

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  +K Y KCA   G V+G+YHPHG+A++YDAL R+AQD+S+   L++G GNFGSV
Sbjct: 71  YEDGLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSV 130

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ K +  +L D+ KDTV+F  NYD S +EP VL +R+PN+LVNG  
Sbjct: 131 DGDPPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGST 190

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE +D    +IDNPD  L+ LME I+GPDFPTGA+I+GR GI+ A
Sbjct: 191 GIAVGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIMGRAGIRAA 250

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +R V+ I +    R +I+VTE+PYQVNKA ++E IA++V++KRI  I+++ 
Sbjct: 251 YATGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNID 310

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D SDR G  + I+LKR AS  ++LNQLY YT +Q+ F V M+A+   +P+  TL  +L+ 
Sbjct: 311 DHSDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGEPKTLTLKEMLQE 370

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ F+EEV+ RRT Y L KAR+RAH+L GL IA+ N+DE++ IIR S +  TA+  + +R
Sbjct: 371 YIKFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTER 430

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L +VQT AI+++RL +LTGL R  I +EL +L
Sbjct: 431 --------------------------FGLDDVQTEAIVQMRLGQLTGLERQKIEDELAAL 464

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            ++IK+  DIL+   R+  I+K EL+ ++++    R+T I+    +++ ED I +E+ V+
Sbjct: 465 ELKIKDYEDILAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVDIEDLIPQEECVL 524

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+++ GYVKR  +  YR QRRGG+G SG+  R+ED  T++F++++H  V+FF+S G VY+
Sbjct: 525 TLTNFGYVKRQKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYR 584

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P GS  ++G  + N+L +   E++T+++  PE +      Y+V  T++G ++R 
Sbjct: 585 LKCYEIPEGSRTSKGMNIANLLPITAEEKVTSMIRVPEFDEE---KYLVMVTRNGIIKRT 641

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS +    + G IA++LD  DE+  V      N++++ TK G  +RF    +R+   R 
Sbjct: 642 LLSAYNSARKGGLIAIELDEGDELAWVRVTDGSNELIVATKKGMAIRFHERDVRLVG-RT 700

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ I+L + D V+ MA +                                       
Sbjct: 701 ARGVKAITLGEDDCVVGMARLREGGK---------------------------------- 726

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTVSE G+G+ +   D+RI  R GKG+    V   ++ G 
Sbjct: 727 -------------------VLTVSETGYGRLSPISDYRIQYRGGKGLLNYHV---DKYGD 764

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + A+  V+ +D +IL+S  G +IR+  + IR  +R +KGV +    +D +VV++ R
Sbjct: 765 VAAIKVVDLDDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKVVTLAR 820



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 106/261 (40%), Gaps = 14/261 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  M        E  +V V+  G +KR  LS Y + R+G  G   + + + D +  +
Sbjct: 611 EEKVTSMIRVPEFDEEKYLVMVTRNGIIKRTLLSAYNSARKG--GLIAIELDEGDELAWV 668

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            +      ++  +  G   +     + +    ARG   +  ++L + + +  +    E  
Sbjct: 669 RVTDGSNELIVATKKGMAIRFHERDVRLVGRTARG---VKAITLGEDDCVVGMARLRE-- 723

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILL 698
                  V+  ++ G  R + +SD+    R GK  +        ++ +++    ++D++L
Sbjct: 724 ----GGKVLTVSETGYGRLSPISDYRIQYRGGKGLLNYHVDKYGDVAAIKVVDLDDDVIL 779

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  +R    +IR    R S GVR + + + ++V+++A   H + D  E +  +++ 
Sbjct: 780 ISADGVIIRIQADSIRE-CARPSKGVRVMRIGEDNKVVTLARAPHEEEDDGEELEGLENT 838

Query: 759 SAQRRLISGDTEEITSLKNDS 779
                 I     +  +   + 
Sbjct: 839 EGGEEEIPDSAGDEEAQTPEE 859


>gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 1003

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/888 (40%), Positives = 520/888 (58%), Gaps = 33/888 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +    K VKC
Sbjct: 105 RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 164

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+ISG+  G YHPHG + IY  L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R
Sbjct: 165 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 224

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  +LDDL  DTVD+ P YD +  EP VL +++PN+L+NG GGIAVGMAT+IP HN
Sbjct: 225 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 284

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             EV D  + +I+ PD  +D L EII GPDFPTG +I GR G++  Y TGR ++V+R   
Sbjct: 285 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARC 344

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313
            IE+  G+R +IVVTEIPYQ  +  ++EKIA LV   RI  I+ +RDESD ++  R+V+E
Sbjct: 345 QIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVE 404

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG   DVILNQLY+++ LQ  FS+  +AL   KP   TL  +L  F+  R  V+ RRT
Sbjct: 405 LKRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRT 464

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
           ++LL +AR R H + GL +A+AN+DE+++ IR S     A+  LM  +  AS ++  +  
Sbjct: 465 QFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGD 524

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +         G   +  L+ VQT  IL +RL +L  L ++ +  E   L  EI + +DIL
Sbjct: 525 EGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYIDIL 584

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            S SR+ GIIK++L  +K      RRT I  E L +++ ED I  E MVV++SH GY+KR
Sbjct: 585 GSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYIKR 644

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P SVY  QRRGGKG  G    +ED +  LF+ STH  +LFF++ G V  +KV+ +P  +
Sbjct: 645 TPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQLA 704

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+A++N+L + +GE+I   +   +   +     +V  TK G V++  L  + +  R
Sbjct: 705 RDAKGRAIVNLLQMEEGEQIAECLAVRDF--NQPGHTIVMTTKSGLVKKTPLEQYSRPKR 762

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+KL   DE++        ++I++ T  G  +RF  S  R    RN+ GV+GISL 
Sbjct: 763 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPMG-RNTSGVKGISLV 821

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+ M +           +   K+   +R     +  +++    D S EG   E   
Sbjct: 822 GDDAVVGMVVTDPE----ATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDE--- 874

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                        +  G      S  +R   R GKG+R    SK N  G ++ +  VND+
Sbjct: 875 -----------AATASG------SARYRTQKRGGKGLRDIKTSKRN--GKVIGIARVNDD 915

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D++ L++ KG L R+   +I +  R T+GV I +  + + +++V R+ 
Sbjct: 916 DELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRVP 963



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 101/291 (34%), Gaps = 44/291 (15%)

Query: 524  LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
               +   D       +V  +  G VK+ PL  Y   +RG  G   + +R+ D + D  +V
Sbjct: 725  AECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRG--GIIAIKLREGDELVDAAVV 782

Query: 584  STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
                 ++  +S G   +   +R     P  R  + +  +SL   + +  ++       + 
Sbjct: 783  GPGDEIIMVTSDGMAIR---FRESDSRPMGRNTSGVKGISLVGDDAVVGMVV------TD 833

Query: 644  NNLYVVFATKHGNVRRNKLSD-----------------------------FIQINRSGKI 674
                ++   K+G  +R                                  +    R GK 
Sbjct: 834  PEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKG 893

Query: 675  AMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
               + +     +++ +     ++++ L T  G+  R     I V   RN+ GVR +++ +
Sbjct: 894  LRDIKTSKRNGKVIGIARVNDDDELFLMTAKGKLQRISAGDINVIG-RNTQGVRIMNVDE 952

Query: 732  GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            GD++I++  V   +   +        ++          E     + D++ E
Sbjct: 953  GDELIAVVRVPAEENAEEAAEAEATAVAEPVAETDASPEADAGSETDAAPE 1003


>gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
 gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 859

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 547/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E +DGCVA I+   DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  + IE+   + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G 
Sbjct: 242 VIRSRAEIEQ-HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EV
Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R        
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q R+I+++RL  LTGL RD +R E   +   I    
Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+
Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P 
Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           G+  A+G+A+ N+L+++  +++   +       D+   N+ Y++F TK G +++  L  F
Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+
Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           G++L     D+V+ M  + H +                                      
Sbjct: 694 GMTLDDDGEDEVVGMISIKHPE-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV 
Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEI 902
           +  V D + +++++  G  IRV V ++ I  RAT+GV +   +K  + + SV  +   E 
Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVVSEEE 820

Query: 903 VDEAE 907
            ++AE
Sbjct: 821 ENKAE 825


>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
 gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
          Length = 865

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/919 (39%), Positives = 529/919 (57%), Gaps = 74/919 (8%)

Query: 1   MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+ +             I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MTDSVGPGSGGPGDSDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP+I    L+++I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y  GRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAELV +K+
Sbjct: 241 IRETYLGGRGSVTMRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS  M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L  R                            LS++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQDR--------------------------HGLSDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  +++   TPRRT I++    + D D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYPTPRRTEILDLGGGLSDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + ED V      + H +++ F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E ITT++P  E     ++  +V  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSE---FSDDTDLVMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F +S 
Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L   D ++SM ++    AD                        
Sbjct: 692 EELRPLGRTARGVRSMNLRDADALVSMDVLPVELAD------------------------ 727

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                     +   S +   +   +  ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 728 ----------QVAASADDEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 777

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+
Sbjct: 778 F--RTDADELVGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRL 835

Query: 892 VSVERIRESEIVDEAESTE 910
           + V  +      D A+ TE
Sbjct: 836 LKVVLVPPEAEDDSADDTE 854



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 96/258 (37%), Gaps = 24/258 (9%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +  +V ++  G++KR  LS +   R    G   + + + D +T +
Sbjct: 609 EEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRS--NGLIAINLEEGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            +     SVL  S  G    ++     L      ARG   +  ++L   + + ++   P 
Sbjct: 667 RLAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARG---VRSMNLRDADALVSMDVLPV 723

Query: 639 DESSW-------------NNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLD-SRD 682
           + +                  +V+ A+  G  +R  ++ F    R+G    AMK     D
Sbjct: 724 ELADQVAASADDEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDAD 783

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++ +       ++LL ++ G  VR           R + GVR   L KGD+++ + +V 
Sbjct: 784 ELVGLSVLGAGEELLLVSEKGVIVRTSA-DAIPQQSRAATGVRLQKLDKGDRLLKVVLVP 842

Query: 743 HADADYDERICYMKHMSA 760
               D            A
Sbjct: 843 PEAEDDSADDTESNDTEA 860


>gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
 gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
          Length = 809

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 532/889 (59%), Gaps = 94/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K 
Sbjct: 5   NTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DP AA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 LAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+      +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +
Sbjct: 185 LAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HI +    R+ I VTEIPYQVNKA ++ KIAELV+++++V I+DLRDESDRQG RVVIEL
Sbjct: 245 HIGEVDN-RKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A+DRAH+L GL  A+  +D ++ IIR S N +TAR+ LM                
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S +Q +AIL+L+L RL  L R  I +E   L   I    D+LS  
Sbjct: 410 ------------FDFSAIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++  ++K++   ++     PR T I  +G+++  +ED +   D++VT+S  G++KRVP 
Sbjct: 458 EKIYALVKEDAKDLRGSYGQPRATEISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPA 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQ 612
           +V+R Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P   S  
Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRI 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + Q ERIT I+     +S   + +++ AT  G +++  L +F  +  SG
Sbjct: 578 AKGTAIVNLIPVTQDERITAILDL---KSFPADHFLLMATNKGEIKKTSLQEFTAVRSSG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAM L + DE+++    T+E DILL T+LGQ +RFP+S +R  + R S GV+ I L+  
Sbjct: 635 LIAMDLATSDELVAAVETTEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLS-- 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                                      K D  V  ++++E    
Sbjct: 692 -------------------------------------------KGDEVVSMDVAQE---- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++TV+E G GK T+  ++   +R+G G+    V  +++ G +VA   V++ DQ
Sbjct: 705 ----GTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSETDQ 758

Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895
           ++L+S  G + R  V E      I I  RAT+GV +    + +RVV+V 
Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 18/219 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I+  ++ G   R P +  R+   R   G+ G+   + D V  +++       +
Sbjct: 496 LVPHMDVIVTLSERGFIKRVPANVFRL-QHRGGTGIMGMPTREADAVRFLSV----SDTH 550

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--------KEQFI 800
           D  + +               ++ + +   +++   I   + + +           + F+
Sbjct: 551 DTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPADHFL 610

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  + KG  K+TS  +F     SG  + A D++  +E   LVA     +   I+L +  G
Sbjct: 611 LMATNKGEIKKTSLQEFTAVRSSG--LIAMDLATSDE---LVAAVETTEEKDILLATRLG 665

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             IR PV+E+R + RA+ GV     +K + VVS++  +E
Sbjct: 666 QSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQE 704



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 113/295 (38%), Gaps = 13/295 (4%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             + G+     +S         ++ F E++   +   +V  ++ G ++R   + F   +R
Sbjct: 472 RGSYGQPRATEISNQG------VIEFREEDLVPHMDVIVTLSERGFIKRVPANVFRLQHR 525

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G + M     D +  +      + +L  T  G+        I   A R + G   ++
Sbjct: 526 GGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVN 585

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L    Q   +  +L   +   +    M     + +  S             +++   S+E
Sbjct: 586 LIPVTQDERITAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDE 645

Query: 789 RCQELKL-KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               ++  +E+ IL  +  G   R    + R S R+  G++A  +SK +E   +V++   
Sbjct: 646 LVAAVETTEEKDILLATRLGQSIRFPVSELRTSLRASGGVKAIVLSKGDE---VVSMDVA 702

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESE 901
            +   +I V++ G      + E     RA  GV+ F    K   VV+ + + E++
Sbjct: 703 QEGTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASKVVSETD 757


>gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4]
          Length = 844

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/919 (38%), Positives = 538/919 (58%), Gaps = 102/919 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V + + M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   DDKIFDNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+W+ R  L++G GNFGS DGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLL------------DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           RYTE RL K +  +              D+  D VDF PN+D + +EP VL ARYPN+LV
Sbjct: 122 RYTEARLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLV 181

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVI 231
           NG  GIAVGMATNIP HNL E++     +IDN      + ++D L+EI++GPDFPTG VI
Sbjct: 182 NGTTGIAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVI 241

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           LG+ GI+ AY TGR  I +R VS IE     + +IVVTE+PY VNKA ++E IA+LV++K
Sbjct: 242 LGKAGIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDK 301

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I  I DLRDES R+G RV IEL+R  + ++ILNQLY++T LQ  F V M+AL   +P+ 
Sbjct: 302 KIDGITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALVNNQPKI 361

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L  ++  +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S +  
Sbjct: 362 LNLKQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVN 421

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +A+  LM+R                            LS+ Q +AI+++RL  LTGL RD
Sbjct: 422 SAKATLMER--------------------------FGLSDAQAQAIVDMRLRALTGLERD 455

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I+ E + L I I +   IL     LLG+IK E+  + D+    RRT I     D+  ED
Sbjct: 456 KIQKEYDDLQILIGKLKAILGDEKILLGVIKTEITEIADKYGDDRRTSIGFDEFDISMED 515

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I   + VVT + LGY+KR+    ++AQ RGGKG  G+   D+D+VT++ ++S+H  +LF
Sbjct: 516 MIPVTNTVVTFTKLGYIKRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLF 575

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + +P  S  +RG A++NIL L   E+IT ++P    E    + Y+  A
Sbjct: 576 FTNKGRVYRIKAYEIPESSRTSRGIAIVNILQLQPDEKITAMIPI---EDYHEDKYLFMA 632

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++ K++++  I ++G  A+ L   D ++ V+    + D+++ TK GQ +RF  +
Sbjct: 633 TADGFVKKTKITEYDNIRKNGLTAITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSET 692

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR ++GV G++L+  D++I M ++   ++                         
Sbjct: 693 EVRS-TGRATMGVIGMNLSADDEIIGMQLISQGES------------------------- 726

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ++TVSE G GK T   +F   +R GKG++   
Sbjct: 727 ----------------------------LMTVSENGLGKCTLMTEFNTIHRGGKGVKCYK 758

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++  + G L+    V  +D+++L++  GT+IR+ V    + SR T GV +    ++ ++
Sbjct: 759 ITE--KTGNLIGAKAVEKDDEVMLINTAGTIIRIEVAGTTLLSRITSGVKLIDLKENTKL 816

Query: 892 VSVERIRESEIVDEAESTE 910
           +S+ ++R+S+ +   E  E
Sbjct: 817 ISIAKVRKSDTILAEEVEE 835


>gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
 gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
          Length = 882

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/914 (38%), Positives = 534/914 (58%), Gaps = 90/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I       +  I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 4   MGDDIFDQTVRSD-TIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSM 62

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS+R +L++G GNFGS+
Sbjct: 63  IELNNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSI 122

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  ++ D+ KDTVDF PN+D + +EPVVL AR PN+LVNG  
Sbjct: 123 DGDGAAAMRYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTT 182

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+  CV +IDN        D+  ++ I++GPDFPTG +ILGR 
Sbjct: 183 GIAVGMATNIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIILGRA 242

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +I+V+EIPY VNKA M+EKIA++V++KR+  
Sbjct: 243 GIEEAYRTGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDG 302

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  LRDE+ R+G RVVIEL++  + +V+LN+LY+ T LQ  + V M+AL G +P   +L 
Sbjct: 303 ITALRDETSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALVGNQPRIMSLK 362

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +E+VV RRT++ LNKA++R H+L GL  A+ N+DEV++IIR S +   A+ 
Sbjct: 363 EVLDHYILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKE 422

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R                            LSE Q +AI+++RL  LTGL R+ +  
Sbjct: 423 QLMGR--------------------------FALSEAQAQAIVDMRLRALTGLEREKLEA 456

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I     IL+   +LL ++K+E+  + D+    RRT+I     D+  ED I  
Sbjct: 457 EHRELMEKIAYFKGILADHKKLLTVVKEEMQEIADKYGDDRRTQIGFDDDDISAEDLIPV 516

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              ++T +  GY+KR+    +RAQ RGGKG  G+    +D++ +L    +H  + FF++ 
Sbjct: 517 THPIITFTKFGYIKRMSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNK 576

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  ARG A++N+L L   E IT+++P    E    + Y+  AT+ G
Sbjct: 577 GRVYRLKAYEIPEASRTARGTAIVNLLQLMPDETITSMIPVVPGED--EDKYLFMATQRG 634

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ +L ++  I +SG  A+ L   D ++ V+     ++++L T+ GQCVRF  S +R 
Sbjct: 635 IVKKTRLREYENIRKSGLAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVRG 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+++GV GI+L+  D VI+M +    ++                             
Sbjct: 695 -TGRSTMGVIGINLSDQDCVIAMQLASQGES----------------------------- 724

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   ++ VS++G GK T + +F   +R GKG++   +++ 
Sbjct: 725 ------------------------LVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITE- 759

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G LV V  V+ ++Q++L++  GT+IR+ + +  +  R T GV +     D+ V S+ 
Sbjct: 760 -KTGDLVGVKSVDKDNQLMLINRAGTIIRINIADTALLGRITSGVKLIDLKGDDEVASIS 818

Query: 896 RIRESEIVDEAEST 909
            ++  ++  E E T
Sbjct: 819 VVQREDLPLEDEDT 832


>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 860

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 549/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V + D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE +   ++ +V+ E+PYQVNKA ++E IA L ++K+I  IA++RDESDR G RVV
Sbjct: 246 AKHHIE-SKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L + I E   IL
Sbjct: 414 ---------------FGLSSIQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  IIK+EL  +K++  TPR+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIKEELNEIKEKFSTPRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ + S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTPDFDESKS---LVFFTRNGVIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDTDEIVTAKIADVQTQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
               ++  A V+  +                                             
Sbjct: 695 IDTDIVVDADVIDNE--------------------------------------------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ ILTVSEKG GKRT+  ++R++NR+G G+ A  +S   + G +V    V+D 
Sbjct: 710 ------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDDT 761

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
             ++L++  G +IRV VN IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 762 QDLMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 809

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/890 (40%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S +   E GI  V I  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  + +
Sbjct: 1   MSENNIIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             N  Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD++ R  L++GQGNFG++DGD  
Sbjct: 61  ASNGPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+TVDF PN+D + +EP +L AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HN+ E +DG +A IDN +I +  L +II+GPDFPTGA I+G  GIK AY TGR
Sbjct: 181 MATNMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGTEGIKEAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I+    +RE+IV+TE+PYQVNK+A++ KIAEL + K I  I+++ D S+R
Sbjct: 241 GKITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G  +++ELKR A+A+V+LN+LY+ T +Q+ F +  +AL   +PE   L  I++ +V  +
Sbjct: 301 KGINIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRTK+ L+KA  RAH++ GL IA+ N+D +++I+R S + + A+ +  +      
Sbjct: 361 VEVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEE----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E Q++AIL++R+ RLTGL RD +  E   L  +IK
Sbjct: 416 ---------------------FKLTEEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK+ELL +K++    RRT I     D+E ED I +ED+V+T++  
Sbjct: 455 WFKEILENNDVLMNLIKEELLEIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQF 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    Y+ Q+RGG+G S   MRD+DFV +LF+ STH  +LFF+SLG V+K K + 
Sbjct: 515 GYIKRMSEGTYKPQKRGGRGVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  +RG A+IN+L L++ ER+T+I+P  E +    +L  +  T+ G ++R    D+
Sbjct: 575 IPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYD---PDLNFLMVTEKGLIKRTPFKDY 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I +SG IA+KL+  D+++ V     + D++L TK G  +RF    +R  +GRNS+GV+
Sbjct: 632 KNIRKSGIIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVR-KSGRNSMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L K D V+S                                                
Sbjct: 691 SMDLDKDDIVVS------------------------------------------------ 702

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L + ++++L +SE G+GK T    +R  NR GKG+    ++  N+ G + +  
Sbjct: 703 -----SDLVVDDKYLLVISENGYGKLTEIDKYRPQNRGGKGLLTYKIT--NKTGDVASAA 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            V   D ++++++ G +IR+   +I +  R T GV + +   D +VV+V 
Sbjct: 756 VVEKEDDVMIIANSGIIIRILTEDISVQGRNTSGVKLMNL-TDAKVVAVA 804



 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ ++  T+ G   R      +    R   GV   ++   D V  + +    D   
Sbjct: 501 IIKKEDVVITLTQFGYIKRMSEGTYKP-QKRGGRGVSSGNMRDKDFVKELFVTSTHDMIL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                  +  +K         +     I +L +    E   S    +E      F L V+
Sbjct: 560 FFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYDPDLNF-LMVT 618

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           EKG  KRT   D++   +SG  I A  +++ ++   L+ V    D++ +ILV+ KG  IR
Sbjct: 619 EKGLIKRTPFKDYKNIRKSG--IIAIKLNEGDK---LIDVHLTKDDEDVILVTKKGLSIR 673

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R + R + GV      KD+ VVS + + + 
Sbjct: 674 FNEEQVRKSGRNSMGVKSMDLDKDDIVVSSDLVVDD 709



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 105/255 (41%), Gaps = 18/255 (7%)

Query: 658 RRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           RR K        R+     + + LD+ D I+ +   ++++      K  +   +    + 
Sbjct: 366 RRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDD------KEAKEKFYEEFKLT 419

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               +  + +R   L   ++    A      AD       +++      LI  +  EI  
Sbjct: 420 EEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILENNDVLMNLIKEELLEIKE 479

Query: 775 LKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              D   + +    ++   +++  KE  ++T+++ G+ KR S   ++   R G+G+ + +
Sbjct: 480 KYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVSSGN 539

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKD 888
           +   + +  L   F  + +D I+  +  G + ++   EI   SR ++G  I +     +D
Sbjct: 540 MRDKDFVKEL---FVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDED 596

Query: 889 ERVVSVERIRESEIV 903
           ERV S+  ++E +  
Sbjct: 597 ERVTSIIPVKEYDPD 611



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 72/191 (37%), Gaps = 19/191 (9%)

Query: 727 ISLAKGD---QVISMA---IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           I    GD    VIS A   I +      ++ +  +      +R+  G  +         S
Sbjct: 477 IKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVS 536

Query: 781 VEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFR---ISNRSGKGIRATDVSKI 835
                 ++  +EL        IL  +  G   +  +Y+      ++R    I   D+ + 
Sbjct: 537 SGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDED 596

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVV 892
             + +++ V   + +   ++V++KG + R P  +   IR       G++     + ++++
Sbjct: 597 ERVTSIIPVKEYDPDLNFLMVTEKGLIKRTPFKDYKNIRK-----SGIIAIKLNEGDKLI 651

Query: 893 SVERIRESEIV 903
            V   ++ E V
Sbjct: 652 DVHLTKDDEDV 662


>gi|256830857|ref|YP_003159585.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
 gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 848

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/886 (40%), Positives = 537/886 (60%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++++SI  E+Q SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++G  +N+ Y K A
Sbjct: 1   MSNISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG++A+YDAL RMAQ++++R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A   L D+ KDTV+FRPNYD S QEP VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 SKLAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDG + ++D+P + +D LM+ I+ PDFPTGA+I G+ GI+ AY TGRGS+ IR    
Sbjct: 181 GEVVDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIYGKAGIREAYRTGRGSVRIRSRIE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  GD E IVV EIPY +NK+ ++EKIA LV E++I  I+DLRDESD +G R+V++LK
Sbjct: 241 IEKRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G  +DVI+NQL+++TSL++ F +NM+A+   +P+   +  +L+ F+ +R EVV+RR+++
Sbjct: 301 KGVFSDVIVNQLFKFTSLETSFGINMMAVVNNRPQLLNVKQVLEYFLDYRREVVIRRSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+ RAH+L GL IA+  +DEVV +IR S  P+ A+  L +R               
Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRER--------------- 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLT L R+ +  E   L  +I+    ++ +  
Sbjct: 406 -----------FGLSEIQAQAILDMRLQRLTNLEREKLLEEYAELLKQIEYLTSVIENTE 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L  +I+QEL  ++D   TPR++ I+    D ++ ED I  E +V+T+S  GY+KR  L 
Sbjct: 455 VLKSVIRQELQDLRDNFATPRKSEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLD 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGG G +GV + +EDF+T +   S H  +  FS+ G +Y+ KV ++P G   AR
Sbjct: 515 NYRQQRRGGTGITGVQVAEEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK + N+L L+  E I   M   + +      +  F TK G V+R+ +  +  I   G I
Sbjct: 575 GKHVANLLPLDSNEYIAAAMTCRDLDQE---KFYFFYTKLGVVKRSSVHLYRNIRAVGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ +   DE++ V      ++++L T  G  +RF  S +R    R + GV+G++L KGDQ
Sbjct: 632 ALGMRDDDELIGVREVETNDEMVLVTVDGYSIRFACSDVRAMG-RTATGVKGLALRKGDQ 690

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++  +V                                                    K
Sbjct: 691 VVAGVVVN---------------------------------------------------K 699

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +Q +LT++E G+GKRT    FR  +R GKGI    ++   + G +V    V   D++I
Sbjct: 700 DTQQELLTIAENGYGKRTQVEHFRAQSRGGKGIINMRITP--KTGKVVGAMMVYPTDELI 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++    +IR+ +++I +  RAT+GV +     ++ VV  + +   
Sbjct: 758 LLTSGSKIIRIGISDISLVGRATQGVRLVRLEDEQTVVCFDHVPTD 803


>gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 979

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/888 (40%), Positives = 520/888 (58%), Gaps = 33/888 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +    K VKC
Sbjct: 81  RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 140

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+ISG+  G YHPHG + IY  L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R
Sbjct: 141 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 200

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  +LDDL  DTVD+ P YD +  EP VL +++PN+L+NG GGIAVGMAT+IP HN
Sbjct: 201 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 260

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             EV D  + +I+ PD  +D L EII GPDFPTG +I GR G++  Y TGR ++V+R   
Sbjct: 261 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARC 320

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313
            IE+  G+R +IVVTEIPYQ  +  ++EKIA LV   RI  I+ +RDESD ++  R+V+E
Sbjct: 321 QIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVE 380

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG   DVILNQLY+++ LQ  FS+  +AL   KP   TL  +L  F+  R  V+ RRT
Sbjct: 381 LKRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRT 440

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
           ++LL +AR R H + GL +A+AN+DE+++ IR S     A+  LM  +  AS ++  +  
Sbjct: 441 QFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGD 500

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +         G   +  L+ VQT  IL +RL +L  L ++ +  E   L  EI + +DIL
Sbjct: 501 EGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYIDIL 560

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            S SR+ GIIK++L  +K      RRT I  E L +++ ED I  E MVV++SH GY+KR
Sbjct: 561 GSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYIKR 620

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P SVY  QRRGGKG  G    +ED +  LF+ STH  +LFF++ G V  +KV+ +P  +
Sbjct: 621 TPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQLA 680

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+A++N+L + +GE+I   +   +   +     +V  TK G V++  L  + +  R
Sbjct: 681 RDAKGRAIVNLLQMEEGEQIAECLAVRDF--NQPGHTIVMTTKSGLVKKTPLEQYSRPKR 738

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+KL   DE++        ++I++ T  G  +RF  S  R    RN+ GV+GISL 
Sbjct: 739 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPMG-RNTSGVKGISLV 797

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+ M +           +   K+   +R     +  +++    D S EG   E   
Sbjct: 798 GDDAVVGMVVTDPE----ATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDE--- 850

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                        +  G      S  +R   R GKG+R    SK N  G ++ +  VND+
Sbjct: 851 -----------AATASG------SARYRTQKRGGKGLRDIKTSKRN--GKVIGIARVNDD 891

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D++ L++ KG L R+   +I +  R T+GV I +  + + +++V R+ 
Sbjct: 892 DELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRVP 939



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 101/291 (34%), Gaps = 44/291 (15%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
              +   D       +V  +  G VK+ PL  Y   +RG  G   + +R+ D + D  +V
Sbjct: 701 AECLAVRDFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRG--GIIAIKLREGDELVDAAVV 758

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
                ++  +S G   +   +R     P  R  + +  +SL   + +  ++       + 
Sbjct: 759 GPGDEIIMVTSDGMAIR---FRESDSRPMGRNTSGVKGISLVGDDAVVGMVV------TD 809

Query: 644 NNLYVVFATKHGNVRRNKLSD-----------------------------FIQINRSGKI 674
               ++   K+G  +R                                  +    R GK 
Sbjct: 810 PEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKG 869

Query: 675 AMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              + +     +++ +     ++++ L T  G+  R     I V   RN+ GVR +++ +
Sbjct: 870 LRDIKTSKRNGKVIGIARVNDDDELFLMTAKGKLQRISAGDINVIG-RNTQGVRIMNVDE 928

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GD++I++  V   +   +        ++          E     + D++ E
Sbjct: 929 GDELIAVVRVPAEENAEEAAEAEATAVAEPVAETDASPEADAGSETDAAPE 979


>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
 gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
          Length = 830

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/881 (40%), Positives = 524/881 (59%), Gaps = 57/881 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL-DDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRLQ      L  D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG VA+I NP+I 
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT----SGDREQIVV 268
              LM+ + GPDFPTGA ILG + IK AY TGRGSI +RGV+ IE        +RE I++
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAIII 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+VIELKR +   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+A+LD ++ +IR +P+  TA+ EL+                           +  
Sbjct: 361 GLLIALAHLDSIINLIRNAPDAPTAKGELIN--------------------------SYG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSEVQ  AIL+++L RLT L  D IR E   L ++I +  DIL  R R+L II+ E   +
Sbjct: 395 LSEVQADAILQMQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K +  TPRRT I     +++D D I  E +++ ++  GY+KR+P+S + +Q R  +G++G
Sbjct: 455 KTQFTTPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAG 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++++D +        H SVLFFS  G VY  K +++P GS  +RG  ++ +L + + E
Sbjct: 515 AKVKEDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+I+   E  S     Y+V  TK GN+++  L  F  I  +G IA+ L+  D++  V 
Sbjct: 575 KITSIVSVSEFSSEE---YLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               E+ +++ ++ G  + F     ++   GR + GV+ + L  GD++I M I+    A 
Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRGVKSMKLKTGDELIGMDILPA--AI 689

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +     M+    +    S + EE +++                       ++L ++  G
Sbjct: 690 LNTLNTEMEEELTEVEETSDNIEETSNILG--------------------PWVLIITIGG 729

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKR     FR+ NR+G+G+ AT          L  +  VN +++I++ +++G +IR  +
Sbjct: 730 YGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQSI 789

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           N I I SR   GV +    +D+ +  V  +       E   
Sbjct: 790 NAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAGDGEESE 830


>gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
          Length = 888

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/909 (38%), Positives = 512/909 (56%), Gaps = 97/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M   G   ++ Y
Sbjct: 15  DDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGY 74

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNFGS   DPPAA RYT
Sbjct: 75  SKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYT 134

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP
Sbjct: 135 ECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIP 194

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HN+ E+ +G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG 
Sbjct: 195 PHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGL 254

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R 
Sbjct: 255 ITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRT 313

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + 
Sbjct: 314 GQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQL 373

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT+YL  +A +R H+L GL  A+  +DEV+R+IR S   E AR +LM+       
Sbjct: 374 EVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLME------- 426

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + +VQ  AIL ++L RL  + R  I +E   L  +I +
Sbjct: 427 -------------------FLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIAD 467

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G
Sbjct: 468 YNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSG 527

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++KR   + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + L
Sbjct: 528 FIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYEL 587

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++ 
Sbjct: 588 PEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRTGKVKKTALAEYD 644

Query: 667 QINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
              + G IA++L +        DE++    C   +DI+L +K G  ++F     ++   G
Sbjct: 645 SPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMG 704

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G+     D++++M +V                                     
Sbjct: 705 RQTAGVQGMKFRGDDELLAMDVVPED---------------------------------- 730

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             +Q +L V+ +GF KRT+  ++R+  R+G G++A  +++    
Sbjct: 731 -----------------SKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--R 771

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+LV    V+++DQ++ +   G +IR  V E++   R T+GV +    K + ++S+ R  
Sbjct: 772 GSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNE 831

Query: 899 ESEIVDEAE 907
           E+   DE E
Sbjct: 832 ET-GEDEVE 839


>gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 827

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 535/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NSYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 709 -----------ADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+  +   
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.]
          Length = 848

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 553/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + +  ++I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++    Y
Sbjct: 3   DGEKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD++ RMAQ+WS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD R N+D + QEP VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G +A I+N +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + +E+    RE I+VTEIPYQVNKA M++K AELV +K+I  I+++RDESDR G R+V
Sbjct: 243 AKAIVEEVK-GRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA  N+DEV+  IR S N + AR +L+ R           
Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E +++ + I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK+EL  +KD+    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYDIIKEELAHIKDKYGDERRSIIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEPDDKVKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L    G+ +RF  +  R    R + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPMG-RTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D+VI M  V   +++                                         
Sbjct: 695 QHENDEVIGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKGFGKR+   D+R++NR GKG++  ++S+  + G LVA+  V+
Sbjct: 714 -----------ILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D++ +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++   E V+E   
Sbjct: 761 DSNDLMIINKSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDVEEDLE 820

Query: 909 TE 910
            E
Sbjct: 821 GE 822


>gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946]
 gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946]
          Length = 805

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/886 (39%), Positives = 519/886 (58%), Gaps = 84/886 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + IT+E++ S++ YA++ I+ RA+PD+RDGLKPV RRIL+   Q G+   +K+ K A
Sbjct: 4   VLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSKSA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEVM KYHPHG+AAIYD LAR+AQ W+ R  LI+GQGNFGS+DGDPPAA+RYTE RL
Sbjct: 64  GIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
               + +L D+ K+TV+F PNYDG+ ++P VL A  PN+LVNG  GIAVGMAT+IP HNL
Sbjct: 124 SSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  VA+ID P + LD +M+++ GPDFPTGA  L R GI+ AYA+GRGS+ +R    
Sbjct: 184 SEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGA-RLSRKGIREAYASGRGSLKVRAKVR 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R  +V TEIPYQVNKA ++ +IA L + K I +IA LRDESDRQG R+ +ELK
Sbjct: 243 NE-DKNGRAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA+  V+LN+LY+++ LQ+ F+VN++A+   +P+  +L  +L+ ++  R EVV RRT+Y
Sbjct: 302 RGANPQVVLNKLYKHSRLQASFTVNLLAIVNGEPKVLSLPELLRHYLNHRREVVYRRTQY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L++A+ RAHVL GL IA+ ++DEV+ +IR S +   AR  L+ R               
Sbjct: 362 ELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIAR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RL GL R+ ++ E   L   I     IL    
Sbjct: 407 -----------FALSDIQAQAILDMRLQRLVGLEREKLQEEYRELQETIAYLSAILQDEK 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL G++K+ELL +K++    RRT++ E       ED I  E MV+T++  G++KR PL  
Sbjct: 456 RLWGVVKEELLEIKNKYGDARRTQLTEFEEGFNPEDLIEDEPMVITLTSQGFLKRTPLEA 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQ RGG G      ++ED    +F+ S H  +LFF++ G VY+EKV+ LP  S QARG
Sbjct: 516 YRAQGRGGVGAQAGKTKEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQARG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             ++++L L +GE +  ++      S     Y VFAT+ G ++R ++ ++  ++ +G IA
Sbjct: 576 THVVSMLPLIEGEEVAALLGVR---SLSEAGYFVFATRQGLIKRTEIQEYQNLSSAGLIA 632

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++ V        I+L T  GQ +RF +  +R   GR S GV GI        
Sbjct: 633 INLLENDALIGVGIAQDGEQIMLATAYGQAIRFDLEDVRA-TGRASQGVTGIRFKDEGDQ 691

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   ++L    + +                                              
Sbjct: 692 VVSLVILPKGYEGE---------------------------------------------- 705

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L V  KG+GKRTS  ++ +  R G+G+     ++  ++G L A+  V  ++ +++
Sbjct: 706 ----VLAVGTKGYGKRTSVAEYPVQGRGGQGVITFKTTE--KVGKLAALMRVAGDEDLLV 759

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +S +G  IR  V  I +  R T GV I + A+D+ VVS   I+  +
Sbjct: 760 LSRRGIAIRTKVGSISLYGRPTSGVKIMNLAEDDEVVSAFVIKPQD 805


>gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
          Length = 840

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/903 (39%), Positives = 540/903 (59%), Gaps = 86/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + I  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+   K
Sbjct: 2   ENGGEKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++Y A+ RMAQ+WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDTVD   N+DGS +EP VL  R P +LVNG  GIAVGMATN
Sbjct: 122 YTEARMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HN+ + +D   A IDN DID++ L++II+ PDFPTG  I G +G++ +Y TGRG +V
Sbjct: 182 MPPHNIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIYGYSGVRESYLTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + +E     RE+++V EIPY VNKA ++ +IA+L+ EK+I  I+++ DESDR+G R
Sbjct: 242 IRPKTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+ A ++V+LN L ++T+LQS F VN VAL   +P    L  I++ FV  R +VV
Sbjct: 302 IVIDIKKDAISNVVLNTLLKHTALQSSFGVNNVALVHGRPRLLNLKDIIRYFVEHRHDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL IA  ++DEV+R+IR S  P+ A+  LM           
Sbjct: 362 VRRTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMD---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q  AI+ +RL +LTGL +D +R E   +   I    D
Sbjct: 412 ----------------AFSLTDKQAAAIVAMRLGQLTGLEQDKLRAEYEDIEKLIAHLND 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+     + IIK ELL+VK +    RRT IV    +   ED    E+MV+T+SH+GY+K
Sbjct: 456 VLAHVELRMEIIKNELLAVKAQYGDDRRTDIVYASEEFNPEDFYADEEMVITISHMGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS Y+ Q RGG G  G   RDEDF+  + + + H ++LFF+  G  +  KV+ +P G
Sbjct: 516 RTPLSEYKVQNRGGVGSKGSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEG 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + Q++G+A+ N+L++   +++   +   +  D    N+ Y+V  TK G +++  L  + +
Sbjct: 576 TKQSKGRAIQNLLNIEPDDKVKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ +   D++L  +    ENDI++  K G+ +RFP S +R    R + GVRGI
Sbjct: 636 PRQNGVNAITIKEGDQLLEAKLTNGENDIMIAVKSGKAIRFPESKVRPMG-RTASGVRGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+ I M  V   +A+                                        
Sbjct: 695 WMDDDDEAIGMVCVEPNNAN---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL VSE GFGKR++  D+RI+NR GKG++  ++++  + G L+A+  V
Sbjct: 715 ------------ILVVSENGFGKRSAIEDYRITNRGGKGVKTINMTE--KTGNLIALIDV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D +++++  G  IR+ V+ +R+  R T+GV + +   ++   S+  + +     E E
Sbjct: 761 TDEDNLMIINRSGLTIRLEVSSLRVMGRNTQGVKLINLRNED---SIAAVAKVSAAKEEE 817

Query: 908 STE 910
           ++E
Sbjct: 818 NSE 820


>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
 gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
          Length = 854

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 549/905 (60%), Gaps = 61/905 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   K +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  L++G GNFGS+D DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL+      LL D+  +TVDF  N+DGS +EPVVL +R P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP+++   L++II GPDFPTG  ILGR+GI  AY TGRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQILGRSGIHEAYMTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        +R+ I++T++PYQ NK+A++E+IA++V +KRI  I+D+RDESDR+
Sbjct: 244 RGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDESDRE 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A + V+LN +Y+ T +Q+ F  NM+AL   +P+  TL   L  F++FR 
Sbjct: 304 GMRIVIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGEPQLLTLKNFLTVFISFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E ++RR+KY L KA +R H+L GL IA+ +LD ++ IIR + +  TA+++L+ +      
Sbjct: 364 ETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQ  AIL+++L RLT L  + I  E   L I+I  
Sbjct: 418 --------------------FELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIAN 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DILS + R+  II++EL+ +K+   TPR T I+    ++ D D I  E  ++ ++  G
Sbjct: 458 LNDILSKKERIEAIIEEELVQIKNIHGTPRCTEIIHDEGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++G  +++ D V        H  VL FS  G VY    +++
Sbjct: 518 YIKRMPVSSFDAQQRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  +RG  ++ +LS+++ E+IT+I+   E +    ++++V  T+ G +++  LS F 
Sbjct: 578 PSSSRTSRGVPIVQMLSISKSEKITSIISVSEFKE---DIFLVMLTRQGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVR 725
            I  +G IA+ L   D++  V    +E+ ++L T+LG  + F     ++   GR + GV+
Sbjct: 635 NIRTNGLIAISLGEGDQLRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPLGRATRGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L K D++ISM I+                        +  T  +   +++  V    
Sbjct: 695 SMRLKKKDELISMDILS-----------------------AQVTIGVEESQDNEEVLEIE 731

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            EE  ++      +IL ++ KG+GKR     FR+  R+G G+RA       +   L ++ 
Sbjct: 732 PEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRAGMGVRAIKFKSGKDN--LTSLR 789

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN  D++++VS++G +IR  V  I + SR+  GV +    +D+ + +V  +      ++
Sbjct: 790 VVNAEDELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDDAIAAVALVPPV-PEED 848

Query: 906 AESTE 910
            E+ E
Sbjct: 849 GENEE 853


>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
          Length = 892

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/906 (40%), Positives = 530/906 (58%), Gaps = 65/906 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL+D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATN
Sbjct: 134 TESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++ G +A+I NP+I    LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +V+T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVV+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILLTLRKMLEVFLEFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L +R     
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQER----- 428

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS VQ  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 429 ---------------------HGLSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+ GII+ EL  ++D    PRRT I++    +ED D I  E  VV ++  
Sbjct: 468 DYKDILGRRERVFGIIEDELGQLRDRHAVPRRTEILDLAGGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYAVPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  ++ +L + + E IT+++   E     ++  ++  T  G ++R +LS F
Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLAVSEFN---DDTDLLMLTTGGYIKRTRLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
             I  +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +   GR + GV
Sbjct: 645 SNIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDNELRPLGRTARGV 704

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R ++L +GD ++SM ++    AD                            ++D   +G 
Sbjct: 705 RSMNLREGDSLVSMDVLPAELADQIAASV---------------------DEDDEGSDGG 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            S         +  ++L  S  G GKR     FR+  R+G G+RA       +   LV +
Sbjct: 744 ESA------AAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTDADELVGL 795

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIV 903
             +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +  E+E  
Sbjct: 796 RVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAETD 855

Query: 904 DEAEST 909
           D+ ES 
Sbjct: 856 DDTESD 861



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 104/282 (36%), Gaps = 31/282 (10%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +  ++ ++  GY+KR  LS +   R    G   + + + D +T +
Sbjct: 609 EEAITSLLAVSEFNDDTDLLMLTTGGYIKRTRLSAFSNIRS--NGLIAIGLEEGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP- 637
            +     SVL  S  G    ++     L      ARG   +  ++L +G+ + ++   P 
Sbjct: 667 RLAVPGDSVLIGSRAGMTIHFRLSDNELRPLGRTARG---VRSMNLREGDSLVSMDVLPA 723

Query: 638 -----------EDESSWNN--------LYVVFATKHGNVRRNKLSDFIQINRSG--KIAM 676
                      ED+   +          +V+ A+  G  +R  ++ F    R+G    AM
Sbjct: 724 ELADQIAASVDEDDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 783

Query: 677 KLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           K     DE++ +       ++LL ++ G  VR           R + GVR   L KGD++
Sbjct: 784 KFRTDADELVGLRVLGAGEELLLVSEKGVIVRTGA-DAIPQQSRAATGVRLQRLDKGDRL 842

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
             + +V       D+                   E+  + ++
Sbjct: 843 ADVVLVPPEAETDDDTESDSAGEPNSNSAPDVVAEQAATPED 884


>gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20]
          Length = 893

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/928 (37%), Positives = 511/928 (55%), Gaps = 100/928 (10%)

Query: 1   MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++ +         ++    + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MSDEVEEIIGDEGATNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G      + K +RI G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ G
Sbjct: 61  RRVLYAMYDGGYRPTASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN
Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGA 229
           +LVNG  GIAVGMAT IP HNL EV  G    +++PD   + L+    E I GPDFPTGA
Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR
Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299

Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE+  R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    
Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G ++ +VA + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP
Sbjct: 360 PRTLSLDGFVRHWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E Q  AIL L+L RL  L
Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I+ E   L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M 
Sbjct: 454 ERLKIQEESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + + +    Y+
Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD---YL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L        DE++S    +   D+LL ++ G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAG 690

Query: 704 QCVRFPISAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           Q +RF      +    R + GV G+   + D +++M +V  +  D D             
Sbjct: 691 QSLRFHADDDTLRPTGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------- 737

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                                +  V+E G+ KRT+  D+ +  R
Sbjct: 738 -------------------------------------LFVVTEGGYAKRTNVVDYPVKGR 760

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G G++  ++ +    G LV     +  D+++ +   G ++R  V E+    R T+GV  
Sbjct: 761 GGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTF 818

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
                 +R+++V R  E ++ +  ++ +
Sbjct: 819 AKPDAGDRIIAVARSTERDMEEAVDAAD 846


>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
 gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
          Length = 922

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/874 (41%), Positives = 529/874 (60%), Gaps = 85/874 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 85  EMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 144

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL + A  LL
Sbjct: 145 KYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELL 204

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP VL AR+PN+LVNG  GIAVGMATNIP HNL E V+   
Sbjct: 205 RDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAAC 264

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A+ID+P+I  D LM+II GPDFPTGAVI+G  GI  AY TGRGSI +R  +HIE T   R
Sbjct: 265 ALIDDPEITTDELMQIIPGPDFPTGAVIMGTEGIHKAYETGRGSITVRAKAHIESTKTGR 324

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPYQVNK ++ EKIA+LV EKR+  I+D+RDES  +G R+VIELK+G    V+
Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGVIPQVV 384

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY++TSLQS F +N +AL    P+  +L  +L  ++A + +VV RRT++ L KAR R
Sbjct: 385 LNNLYKFTSLQSTFGINNLALVEGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKARAR 444

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  IA+ ++DEV+ IIR S     A   L +R                       
Sbjct: 445 AHILEGYLIALDHIDEVISIIRSSETDAEASARLTER----------------------- 481

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 ++ QT AILE++L RLTGL R  I  EL++L   I+   D+L+ + ++L +IK+
Sbjct: 482 ---FGFTDRQTAAILEMKLRRLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKE 538

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +   PRRT I E   +++ ED I  EDMVVT++H GYVKR+P++ YR+Q+RGG
Sbjct: 539 EMREIARKFGDPRRTEIREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGG 598

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFS+ G VY+ KV  LP+GS QARG A++N+L 
Sbjct: 599 KGVSGVNLKEDDVIAEMFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLP 658

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
             +GE+I +++   +     ++ +++FAT+ G V++  +S + +  R G IA+ L + D 
Sbjct: 659 FEEGEKIASVISTRD---FPDDEFLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKTDDA 715

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L V     ++ I++ T  G+ + F    +R   GR++ GVRGI L    +V+ M I   
Sbjct: 716 LLDVRRVRPQDKIIMATTEGKAIMFEQEQVRA-TGRDTSGVRGIDLRGSARVLGMEITN- 773

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                                + F++T 
Sbjct: 774 --------------------------------------------------GQGDLFVITE 783

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +  G  KRT   D+   +R G+G+    +++    G L A+  V    ++ +++   T+I
Sbjct: 784 NGYG--KRTPVRDYPTQHRGGQGVYTIQMTQR--KGMLAAMKTVGPQHELFIITKGATVI 839

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           RV   EI    RAT+GV + + A  + V++V R+
Sbjct: 840 RVKTGEISQTGRATQGVKMMNVADGDLVIAVARM 873



 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 96/236 (40%), Gaps = 15/236 (6%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFP--ISAIRVFAGRNSVGVRGISLAKGD 733
           + LD  DE++S+   ++ +         +        +AI     R   G     L +G 
Sbjct: 453 IALDHIDEVISIIRSSETDAEASARLTERFGFTDRQTAAILEMKLRRLTG-----LERGK 507

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
               +  +  A   Y++ + + + + A  +    +          + +     E   ++L
Sbjct: 508 IAAELDALRQAIEYYEDLLAHKEKVLAVIKEEMREIARKFGDPRRTEIREAEKELDVEDL 567

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ++T++  G+ KR     +R   R GKG+   ++ + +    +  +F  + ++ +
Sbjct: 568 IADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDD---VIAEMFIASTHEFV 624

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDEA 906
           +  S +G + R+ V+E+ + SR  +G  I +     + E++ SV  I   +  D+ 
Sbjct: 625 LFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIASV--ISTRDFPDDE 678


>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 817

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/901 (41%), Positives = 527/901 (58%), Gaps = 87/901 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+    +  V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N
Sbjct: 2   DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG+ ++YDA  R+AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF PNYDGS QEP VL ++ PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEVVDGCV +ID PD  L+ +M  I+GPDFPTGA I+GR GI  AYATGRGS+
Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + +E  +  + +IVVTEIPYQVNKA ++E IAEL R + I  I  LRDESDR+G 
Sbjct: 242 KMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+   + D+ILN+LY++T LQ  F + M+AL    P   +L+ +L+ ++  + +V
Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L+KA  RAH+L GL IA+ ++DEV+R IR S   ETA+  LM          
Sbjct: 362 ITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMT--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL++RL RLTGL R+ I  E   L   I    
Sbjct: 413 -----------------AFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +++ I+K ELL  K      RRT++     ++  ED I  E MV+T++  GY+
Sbjct: 456 SVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYM 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  +VY  Q +GG+G  G+  +DED V  L   S   +VLFF++ G VY+ K + +P 
Sbjct: 516 KRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPE 575

Query: 609 G-SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G A INIL L+ GE++  ++   + + S N   +  AT++G V++ +L++F  
Sbjct: 576 ANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMN---LFMATENGLVKKTELAEFKN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G IA+ L   D +  V     +  I+L TKLG  + F  S +R    RN+ GVRGI
Sbjct: 633 VRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPMG-RNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SLA GD+VI   ++                                              
Sbjct: 692 SLAPGDRVIGADVLAP-------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +LTVSE+GFGKR +   ++I  R GKG +   ++   + G +V V  V
Sbjct: 708 ---------DCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITP--KTGVIVGVEVV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ +++L++  G +IR  +  I I   R T GV I     D++V +++ I       EA
Sbjct: 757 REDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEEREA 816

Query: 907 E 907
           E
Sbjct: 817 E 817


>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 815

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/897 (40%), Positives = 556/897 (61%), Gaps = 86/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I ++ +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Q+G++ NK  
Sbjct: 3   ENQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+GKDTVDF PN+DG   EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + NP+I +D L++ I GPDFPTGA+ILG+TGIK AY TGRG I  R
Sbjct: 183 PHNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALILGKTGIKEAYTTGRGKIKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE    +RE+I+++EIPYQVNKA ++EKIA+LV+EKRI  I+D+RDESDR+G R+V
Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KR ++A+++LN LY+YT L++ F +  +AL G +P+   L  +++ +V  ++EVV R
Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALVGGEPKILNLKELIEYYVDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L++AR+R H++ GL IA+ ++DE+++IIR S + +  ++    R           
Sbjct: 363 RTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q++AIL+++L RL+GL  + +  E   L   I+  L IL
Sbjct: 412 ---------------YKLSDAQSQAILDMQLKRLSGLEIEKLNAENKELADTIEYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +K++    RRT+IV    +++  + I  ED+++ ++  GY+KR+
Sbjct: 457 NSEENLINLIIDEITEIKEKYSDERRTKIVPDEGEIDITELIEEEDILINLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+SLG VY  + +++P GS 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG+A+INIL+L  GE+IT +M   E      N  +V  T+ G +++    +F  I R+
Sbjct: 577 TSRGQAIINILNLETGEKITEMMTLSE---LSKNSQLVLQTQQGQIKKTDAENFTNIRRN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    ++ +++++T+ G  ++F    +R    R++VGVR I L K
Sbjct: 634 GIIAISLKDWDKLISVRQIDKDEELIISTQNGMTIQFNTKDVRSMG-RSAVGVRAIRLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SM I                                                   
Sbjct: 693 DDAVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K +E ++L V+E GFGK+TS  +F+  NR GKG+R   VS+  + G +V   PV+ + 
Sbjct: 702 --KGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSE--KTGKVVDTLPVDLDT 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDEAE 907
            I++VS KG +IR+   ++    R T GV + + A +++ +VSV         +E +
Sbjct: 758 DIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLASEEDAIVSVTTYDNMLEDEEKD 814


>gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
 gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
          Length = 886

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/855 (45%), Positives = 532/855 (62%), Gaps = 27/855 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L+++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K +H +L DL K+TVDF  NYDG+ + P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A++ +PD+ +D LME I GPDFPTGA+I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGAIINGRAGIIQAYRTGRGRIYVRAR 245

Query: 254 SH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +  I      ++ I+V EIPYQ+NKA ++E+IAELV+EK+I  I +LRDESD+ G RVVI
Sbjct: 246 AEVIHDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   DV+LN LY  T LQS+F +NMVAL   +P+   L  IL+AFV  R EVV RR
Sbjct: 306 ELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVDGQPKILNLKEILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLAIA+AN+D V+ +I+ SP+   A+ +L+ RSW   D+  +++
Sbjct: 366 TVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YLS  Q +AILELRL RLTGL  + + NE      EI
Sbjct: 426 RAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLREI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+ILS   RL  +I++EL  +  E    RRT I     D+  ED I  ED VVT+SH
Sbjct: 486 AEYLEILSDADRLKAVIREELEEIVTEYGDERRTEITASQHDLTVEDLITEEDRVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y+AQRRGG G+S   ++DEDFV  L I STH ++L FS+LG VY  KV+
Sbjct: 546 GGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+    +RG+ +IN+L L +GER+T+I+P    E      Y+  AT  G V++  L +
Sbjct: 606 QIPLAGRNSRGRPMINLLPLEEGERVTSILPV---EDYTEGHYIFMATASGTVKKTALIN 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G  A++L+  D ++     T + D++L +  G+ VRF    +R    R + GV
Sbjct: 663 FARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAMG-RTARGV 721

Query: 725 RGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RGI L  G ++IS+ I      VL    +   +   M     + R   G     TS +N 
Sbjct: 722 RGIKLGDGHEMISLIIPREGGRVLTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERNG 781

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + V      +  Q        ++ +S +G   RT + +  +  R+ +G+R         +
Sbjct: 782 TLVGAVQVFDGDQ--------LMLISNQGTLVRTRADEISVLGRNTQGVRVIRTKTDESL 833

Query: 839 GALVAVFPVNDNDQI 853
            ++  +    D+D++
Sbjct: 834 VSVERIEEPEDDDEL 848



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 94/253 (37%), Gaps = 15/253 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +       +   +  G VK+  L  +  QR    G   + + + D +    
Sbjct: 629 ERVTSILPVEDYTEGHYIFMATASGTVKKTALINFARQRS--VGLRALELEEGDVLVGTA 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +    V+  SS G   + K   +      ARG  +  I   +  E I+ I+P      
Sbjct: 687 VTTGDCDVMLLSSEGKAVRFKEGDVRAMGRTARG--VRGIKLGDGHEMISLIIP------ 738

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+  +++G  +R ++S+F    R   G IAM+       ++        + ++L
Sbjct: 739 -REGGRVLTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERNGTLVGAVQVFDGDQLML 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR     I V   RN+ GVR I     + ++S+  +   + D +     +   
Sbjct: 798 ISNQGTLVRTRADEISVLG-RNTQGVRVIRTKTDESLVSVERIEEPEDDDELATEALSEG 856

Query: 759 SAQRRLISGDTEE 771
             +    +   ++
Sbjct: 857 VDETAAPAATEDD 869


>gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 827

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/897 (40%), Positives = 535/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K +
Sbjct: 2   QRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG+ A+YD+L R+ Q++S+R  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K TVDF  N+D S +EP VL +  PN+L NG  GIAVGMATNIP
Sbjct: 122 EVRMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG +A+I NP++++  LM+ +  PDFPTG +I G  G+++AY TGRG +VIR
Sbjct: 182 PQNLREVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIYGYEGVRSAYMTGRGKVVIR 241

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E T    RE IVVTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR G R+
Sbjct: 242 ARAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  ++  ++  R E+V+
Sbjct: 302 VIELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMVYYIKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R          
Sbjct: 362 RRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E   +   I+E   I
Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LGSPEKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHEGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DFV  +FI STH  +LFF++ G  +  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+AL NI+ L QGE+I   +     +      ++V AT +G V++  L DF    +
Sbjct: 576 RAARGRALANIMELQQGEKIRAYINIRNFDE---PGFIVMATTNGIVKKTPLEDFSHPRK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D  DE+L       ++ I+L    G  VRFP + IR    R ++GV+GI+L 
Sbjct: 633 NGIAAITIDEHDELLDARLTDGDHQIILAKNSGFVVRFPEAEIRSMG-RTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 EGEKCISMVTTKRFD--------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  ++GAL+ +  VND+
Sbjct: 707 -------TALLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KVGALIGLLDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++ +G + R  V++IR+  R T GV +      + + ++ R+ +S+   +++
Sbjct: 758 DDLIIITAQGIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALARVPKSDEEVDSD 814


>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
 gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 863

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/916 (37%), Positives = 538/916 (58%), Gaps = 70/916 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S D    E  + I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDIVDSGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I NP ++   L E+I+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  + +GRGSI +RGV+ IE+       +++ +++TE+P+Q NKAA++E+IA+LV +K+
Sbjct: 241 IKETFKSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR   + RRT +LL KA +R H++ GL +A+  +D ++ +IR + +  +
Sbjct: 361 SLRKMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L +                             LS +Q  AIL+++L RLT L  D 
Sbjct: 421 AREQLQK--------------------------DHELSVIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I++E + L  +I +  +IL  + R+  II +EL  + +   +PR+T I+     ++D D 
Sbjct: 455 IKSEHDELTRKITDYKNILQDKDRINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + +  RG +G++G   +++D V      + H ++L F
Sbjct: 515 IANERSVVLLTSAGYLKRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+I+     ES  N+ Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSIVSV---ESFDNDRYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +  G  + F +  
Sbjct: 632 KAGFIKRTPLSAFSKIRSNGLIAINLEEGDALTWVRLSKEGDSVLIGSSKGMTIHFRLDN 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GV+ ++L  GD+++SM +                       L S   ++
Sbjct: 692 NELRPLGRTARGVKSMNLKDGDKLVSMDV-----------------------LTSDLVDQ 728

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           + SL+N++       +E  +    K  ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 729 LASLENEN-------DEDIESNSSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIK 781

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +  +LV +  + + +++I V+++G ++R   ++I   SRA  GV +      + +
Sbjct: 782 F--RIKDDSLVGLKVLGEGEELIFVTERGVIVRTNADKISQQSRAATGVRLQRLDDGDHL 839

Query: 892 VSVERIRESEIVDEAE 907
             V  +   +I D  +
Sbjct: 840 SEVVLVPHEQIDDSDQ 855


>gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
 gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
          Length = 993

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/973 (39%), Positives = 553/973 (56%), Gaps = 84/973 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL DL KDTV++  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  ++P I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L++ T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLE 423

Query: 433 LI------------DDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D S   G DG    LS  Q  AI+ELRL RLTGL +D +  E + 
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    R+T IVE  +D   ED I  E MV
Sbjct: 484 ILSQIAELTAILNDFNLLMNVIREELALILQQYGDARKTSIVESRIDFSREDLIPEEQMV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S+H +VL F+++G VY
Sbjct: 544 LTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L++ E IT I+P  +    +       A     V+ 
Sbjct: 604 RLKVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKER---LAAFKAFVKA 660

Query: 660 N-----------------------------KLSDFIQINRS--GKIAMKLDSRDEILS-- 686
           N                              +SD ++I     G      D  D+I++  
Sbjct: 661 NAAQLQANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSATDLDDDIINDF 720

Query: 687 ---VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI--- 740
               E   +   + + T+ G   R     +  F+   S G+R I L   D +I +AI   
Sbjct: 721 AQQAEAVRKNFYVFMATEYGTIKRV---ELEQFSNVRSNGLRAIELNGDDTLIGVAITDG 777

Query: 741 -------------VLHADADYDERICYMKHMSAQRRLISG-------DTEEITSLKNDSS 780
                        +  A+ D        K +   R  I         D  EI S   D S
Sbjct: 778 EQQIMLFSNEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGS 837

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               IS      +  +   +L  SE G+GKRT   DF    R GKG+ A   S+ N  G 
Sbjct: 838 DSALISRIVSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GQ 895

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVERI 897
           LV    ++ + +++L+SD GTL+R   +E+    R  +GV +     +E    VVS+E +
Sbjct: 896 LVGAVAIDASKELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAV 955

Query: 898 RESEIVDEAESTE 910
            E E V+  E  E
Sbjct: 956 EEDEFVEAIEGAE 968



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 114/336 (33%), Gaps = 46/336 (13%)

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED-- 537
           +     E    L+        I   L     +L       +    LD +  +   ++   
Sbjct: 671 INAHFAELEAALTESEDGADDISDALRIQLKQLGL----ELSATDLDDDIINDFAQQAEA 726

Query: 538 -----MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G +KRV L  +   R    G   + +  +D +  + I      ++ F
Sbjct: 727 VRKNFYVFMATEYGTIKRVELEQFSNVRS--NGLRAIELNGDDTLIGVAITDGEQQIMLF 784

Query: 593 SSLGFVYKEKVWRLPIGSPQARGK--------ALINILSLNQGE---------------R 629
           S+ G   +     +      A+G         A   +   ++ E               R
Sbjct: 785 SNEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGSDSALISR 844

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILS 686
           I +++  PE         V+ A+++G  +R  + DF    R GK  IA+K      +++ 
Sbjct: 845 IVSLVVVPETGE------VLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGQLVG 898

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                   +++L +  G  VR   S +    GRN+ GVR I L   + ++ +  +   + 
Sbjct: 899 AVAIDASKELMLISDGGTLVRTRASEV-AQTGRNAQGVRLIRLGNEELLVGVVSIEAVEE 957

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           D                 ++ +TE++     +S  E
Sbjct: 958 DEFVEAIEGAESLVAETDVAAETEQVAKDGENSVEE 993


>gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1]
 gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1]
          Length = 826

 Score =  739 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 543/906 (59%), Gaps = 86/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT++ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFSENDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + +  +  + VL AD                                       
Sbjct: 691 RGINLRE-NDYVVGSGVLGADDQ------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 713 ---------------VLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +N N+ +++++  G +IR  + ++    R+T GV +       +V S+  +   E  D
Sbjct: 756 TIINSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDGSQVASLTIVPTEEEQD 815

Query: 905 EAESTE 910
           +    +
Sbjct: 816 QTGDDD 821


>gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
 gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
          Length = 879

 Score =  739 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/846 (44%), Positives = 529/846 (62%), Gaps = 21/846 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYDGS  EP+V  AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C+A++ NP++D++ L+E +  PDFPT   I G  G+K  Y TGRG ++
Sbjct: 182 IPPHNMTEVIDACLALLKNPEMDIEELIEYVPAPDFPTAGFIYGLAGVKEGYRTGRGRVI 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E    G+R+ I++ E+PYQVNKA +L KI E+VREKR+  I+++RDESD+ G 
Sbjct: 242 MRARCHFEDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R VIELKRG +ADV+LN+LY+ T +Q  F +NMVA+   +P    L  ++ AF+  R EV
Sbjct: 302 RAVIELKRGENADVLLNKLYKDTQMQDSFGINMVAIVDGQPRLLNLKQVMDAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P  A+RELM +SW +  ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVE 421

Query: 429 DLIDLIDDSSYTIGSDGTM-----------YLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           D++  + D+S   G                +LS+ Q +AILELRL RLTG+ +D I  E 
Sbjct: 422 DMLSRVSDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEY 481

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I + LDIL+   R+  II  EL++VK +    RR+ IV    DM  ED I  ED
Sbjct: 482 REVMDKIADLLDILAKPERVTAIIGDELVAVKTQFGDKRRSEIVTHTHDMSMEDLIPPED 541

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K   +  Y+AQ+RGG+GR     +D+DF+ +LF+ +TH  +L FS+ G 
Sbjct: 542 VVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKGR 601

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  KV+ +P GS  ARGK ++N+L L +GE+I  I+P  E      + YV FAT +G V
Sbjct: 602 VYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFAE---DKYVFFATANGTV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+DF +  + G IA+ LD  D ++ V      +D++L +  G+ VRF  + +R   
Sbjct: 659 KKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVRE-T 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSL 775
           GR S GVRG+ L +  QVISM +  +            Y K          G   +    
Sbjct: 718 GRASRGVRGMKLHENQQVISMLVAENEQQSVLTATENGYGKRTPVGEYTRHGRGTQGMIA 777

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              S   G +       L   E  I+ +   G   RT   + R   R+ +G+   ++ K 
Sbjct: 778 IQTSERNGKV---VAATLVNPEDEIMMIGTNGVLIRTRVREIREMGRTTQGVTLMNLEKG 834

Query: 836 NEIGAL 841
             +  L
Sbjct: 835 ERLAGL 840



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 115/259 (44%), Gaps = 14/259 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+  L+ +   R   +G   + + ++D++  + 
Sbjct: 632 EKINAILPVTEFAEDKYVFFATANGTVKKTTLTDF--SRPMKRGIIAINLDEDDYLIGVA 689

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I   H  V+ FS+ G   +     +      +RG   +  + L++ +++ +++    ++ 
Sbjct: 690 ITDGHHDVMLFSNSGKAVRFDEADVRETGRASRG---VRGMKLHENQQVISMLVAENEQQ 746

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           S     V+ AT++G  +R  + ++ +  R   G IA++      ++++      E++I++
Sbjct: 747 S-----VLTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSERNGKVVAATLVNPEDEIMM 801

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G  +R  +  IR    R + GV  ++L KG+++  ++ +  +D +  E +     +
Sbjct: 802 IGTNGVLIRTRVREIREMG-RTTQGVTLMNLEKGERLAGLSRIAESDEEELEELDSGSGI 860

Query: 759 SAQRRLISGDTEEITSLKN 777
                +I G  E+ +  ++
Sbjct: 861 EDSGNVIDGQEEQESGTED 879


>gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273]
 gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273]
          Length = 815

 Score =  739 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/884 (41%), Positives = 521/884 (58%), Gaps = 85/884 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K AR+ GEV+GK
Sbjct: 1   MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YD+L R+ QD+SLR  LI+GQGNFGS+DGD PAA RYTE R+++ A  +L 
Sbjct: 61  FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL EVVDG +A
Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDR 263
           +I NP++++  LM+ +  PDFPT  +I G  G++ AY TGRG +VIR  + IE T    R
Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAGIIYGYEGVRQAYLTGRGKVVIRARALIEVTQKNGR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E IVVTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR G R+VIELKR A A V+
Sbjct: 241 ESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT++ L  A  R
Sbjct: 301 LNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERR 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL I + NLDEV+  IR SP+  TA+  LM+R                       
Sbjct: 361 AHILEGLKICLDNLDEVITTIRESPDANTAQDRLMER----------------------- 397

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                LSE+Q +AILE+RL RLTG+ R  I  E       I E   IL S  R + II+ 
Sbjct: 398 ---FALSEIQAKAILEMRLQRLTGMERQKIDAEYKETLATIDELRLILQSPERQMEIIRT 454

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           ELL VK+     RRT IV    D   ED I +ED+V+TV+H G++KR P+S YR Q RGG
Sbjct: 455 ELLKVKEVYGDERRTEIVPQEGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG +G   + +DF+  +F+ STH  +LFF++ G  Y  KV+ +P     ARG+AL NI+ 
Sbjct: 515 KGVTGAQAKHDDFIEHMFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIME 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L+  E+I   +     +      Y++ AT  G V++  L +F +  R+G  A+ +D  D 
Sbjct: 575 LHPDEKIKAYINIRNFDE---PGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDA 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L       ++ ++L    G  VRFP   +R    R ++GV+GI+L +G++ I+M     
Sbjct: 632 LLDARLTDGDHQVILAKSSGLVVRFPEVQVRPMG-RTAMGVKGITLDRGEKCIAMVTTKR 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            D                                                      +L V
Sbjct: 691 TD----------------------------------------------------TALLAV 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ GFGKR+   D+R++ R  +G+      +  +IG+LV +  VND+D +IL++  G + 
Sbjct: 699 TDNGFGKRSRVEDYRLTKRGARGVITLKAHE--KIGSLVGLLDVNDDDDLILITTHGIVN 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  V++IRI  R T GV +      + + ++ R+ +S+   +++
Sbjct: 757 RQHVSDIRITGRNTSGVKLIRLMAGDTISALARVPKSDEETDSD 800


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  739 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/907 (41%), Positives = 565/907 (62%), Gaps = 88/907 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  + +    I   +I++EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+
Sbjct: 1   MEDNTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG+ A+YD++ RMAQ++S R +LI+G GNFGS+DGD  
Sbjct: 61  TSDKPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+TVDF  NYDG  +EPVVL +R+PNVLVNGG GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATG 244
           MATNIP HNLGEV+D  +A+IDNPDI +  LME  I GPDFPTGA++LGR+GIK+A+ TG
Sbjct: 181 MATNIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGALLLGRSGIKSAFETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+V+R    IE+    + +I+++EIPYQVNKA ++EKIA LVR+K I  I DLRDES+
Sbjct: 241 RGSVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESN 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+V+EL+R   A+V+LNQLYR T+LQS F VNM+AL   +PE   L+ +L  +   
Sbjct: 301 REGIRIVVELRREVQAEVVLNQLYRLTALQSSFGVNMLALVNGRPELLNLLQVLSHYRDH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + E+V RRT++ L KA DRAH+L GL IA+ ++DEV+ IIR S +   A   L +     
Sbjct: 361 QIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNE----- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E+Q++A+L+++L RLTGL RD + NE N L I I
Sbjct: 416 ---------------------AFDLTEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL++  RLL IIK EL+ +K +    RR+ IVE  +DM DED I  ED+VVT++ 
Sbjct: 455 VDLKDILANHDRLLTIIKDELIEIKTKFGDDRRSEIVEADIDMLDEDLIPVEDIVVTMTM 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR  +  +  Q RGGKG  G+   DED V     +STH  +L F++LG VY+ + +
Sbjct: 515 NGYIKRTTVDSFNTQNRGGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGF 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  ++G  ++N+L+L +GE + T++   +D+ S    Y  F TK G V+R ++ +
Sbjct: 575 NVPSSSRTSKGIPVVNLLNLTEGETVKTLVKVAKDDES---KYAFFVTKQGIVKRVEVQE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I ++GKIA+ L   DE++ V     +N+I++    G+ VRF  + +R    R + GV
Sbjct: 632 FESIRQNGKIAITLREDDELVGVRMTNGDNEIIIGGSNGKAVRFDENEVRSMG-RTASGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G ++ +G +V+ +                                              
Sbjct: 691 IGFNVDEG-EVVGI---------------------------------------------- 703

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      + Q+IL V+EKG+GKRT   ++R + R  KG++  ++++ N  G LV++
Sbjct: 704 -------ATDREGQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKN--GNLVSL 754

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIV 903
             VN +++ +++S++GT+IR  ++ I I  R+T GV + +  + + V  V  ++ + E  
Sbjct: 755 RAVNGDEEALIISNEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAILQPTVEEP 814

Query: 904 DEAESTE 910
           DE ++T+
Sbjct: 815 DEEQTTD 821



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 101/248 (40%), Gaps = 16/248 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +              V+  G VKRV +  + + R+ GK    + +R++D +  + 
Sbjct: 598 ETVKTLVKVAKDDESKYAFFVTKQGIVKRVEVQEFESIRQNGK--IAITLREDDELVGVR 655

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +    ++   S G   +     +      A G   +   ++++GE    ++    D  
Sbjct: 656 MTNGDNEIIIGGSNGKAVRFDENEVRSMGRTASG---VIGFNVDEGE----VVGIATDRE 708

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
                Y++  T+ G  +R  ++++ +  R  K        +    ++S+     + + L+
Sbjct: 709 ---GQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKNGNLVSLRAVNGDEEALI 765

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  +R  IS I ++  R+++GVR I++ + D V  +AI+     + DE     +  
Sbjct: 766 ISNEGTVIRTEISNIGIYG-RSTIGVRLINVGETDSVSQVAILQPTVEEPDEEQTTDQVE 824

Query: 759 SAQRRLIS 766
               + I 
Sbjct: 825 PVNEKEIE 832


>gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37]
 gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37]
          Length = 898

 Score =  739 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/887 (42%), Positives = 538/887 (60%), Gaps = 55/887 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    ++ ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK 
Sbjct: 3   EFVSDVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK AH LL DL K+TVDF PNYDG+   P V+  + PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+I++ DI +D L+E I GPDFPT  +I GR GI +AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGIINGRKGIIDAYHTGRGKIKV 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE      RE IVV E+PYQVNKA ++EKIAE V++K+I  I+ LRDESD+ G R
Sbjct: 243 RAKADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+KRG   +V+LN LY  T +Q  F +N VAL+  +P+ F L  +L+AF+  R EVV
Sbjct: 303 MVVEVKRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQPKLFNLKEMLEAFILHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLAI++AN++ ++ +IR S  P  A+  L  + WN   +  
Sbjct: 363 TRRTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             D   +++EVQ +AIL+LRL +LTGL  + I  E   L 
Sbjct: 423 MLEASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I   L IL +  RL+ +I++EL  +K     PRRT I     D+  ED I  ED+VVT
Sbjct: 483 EIIAALLFILENPERLMEVIREELEEIKANFADPRRTEITASETDLSIEDLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y +QRRGGKG++   M+DEDF+  L + STH ++L FS+ G +Y  
Sbjct: 543 LSHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTRGRLYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S QARG+ ++NIL L +GERIT I+P  +     ++ +V  AT +G V++  
Sbjct: 603 KVFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYA---DDKFVFMATANGTVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF----- 716
           LS + +   SG IA+ L+  +E++ V      N+I++ +  G+ VRF  +          
Sbjct: 660 LSAYSRPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLDENG 719

Query: 717 -------------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDER 751
                               GR + GVRGI L +G++V+S+ I      +L    +   +
Sbjct: 720 APVLDEEGNPEIKVKGVRAMGRTATGVRGIKLKEGEKVVSLIIPNETGHILTTTENGYGK 779

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              ++  S++ R   G      S +N   V     +            I+ ++ +G   R
Sbjct: 780 RTPLEDYSSKSRATQGVISIKVSERNGKVVGAVQVD--------TNDEIMLITNRGTLVR 831

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAV-----FPVNDNDQI 853
           T   +  +  R+ +G+     ++  +I AL  +      PV + D++
Sbjct: 832 TRVSEVSVVGRNTQGVTLIRTAEGEKIVALQRIEEIEDLPVYEEDEV 878


>gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 820

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/892 (40%), Positives = 538/892 (60%), Gaps = 83/892 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF   ++G  + +   KCARI 
Sbjct: 8   ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL RMAQD+S+R  L EGQGNFGS+DGD PAA RYTE R+ + 
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TVDFRPNYD S +EP+VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            +  + +ID+PD+ +D L+ II GPDFPTG  I    G+ +AY  GRG++ +RG   IE+
Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIEE 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                + IV+ EIP+ +NK++++EKIA LV E++I  IADLRDESDR+G RVVIELK+G 
Sbjct: 248 RKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKGV 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++I+N LY++T L++ F +NM+A+   +P+  T+   L  F+  R EV+VRRT++ LN
Sbjct: 308 IPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRFELN 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H+L+GL  A+ ++DEVV +IR S  P  A+  L++R                  
Sbjct: 368 KAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIER------------------ 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q ++IL++RL RLTGL R+ +  E++ L  +I     IL     L 
Sbjct: 410 --------FSLSEIQAQSILDMRLQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILW 461

Query: 499 GIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           G+I+ E+  +K+   TPRRT  I E L ++E ED I  +D+V+T+S  GY+KR  L++Y+
Sbjct: 462 GVIRDEVTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQ 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKG +G+   ++DFV +    + H  +L F++ G +++ KV ++P GS  A+G  
Sbjct: 522 QQRRGGKGVAGLHTSEDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTH 581

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NI+ L + E +TTI+   E     +N + +FAT+ G V+R+  S + +  R+G +A+ 
Sbjct: 582 IANIVPLEKEEWVTTILTVRE---FSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVG 638

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V+  T  + I+L T  G  +RF    +R    R + GV+GI+L  GD V++
Sbjct: 639 LREDDELIMVKEVTNNDFIVLATAEGFAIRFSCEDVRNMG-RGAAGVKGIALRPGDSVVA 697

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             I+                                                    K   
Sbjct: 698 CLILQE--------------------------------------------------KQDT 707

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             I+TVS  G+GKRTS   +R+  R GKGI    V++  + G ++   PV+D++ ++L++
Sbjct: 708 PAIMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQ--KTGLVIGAKPVSDDNALVLLT 765

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
               +IR+ V+E+R A RAT GV +        VV  + +  +      ++T
Sbjct: 766 STNKIIRMSVDEVRSAGRATMGVRLVKLDDGAYVVGFDTVDGTVDDSCDDAT 817


>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
 gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
          Length = 809

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 532/889 (59%), Gaps = 94/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K 
Sbjct: 5   NTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DPPAA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 LAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+      +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +
Sbjct: 185 LAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HI +    R+ I VTEIPYQVNKA ++ KIAELV++++IV I+DLRDESDRQG RVVIEL
Sbjct: 245 HIGEVDN-RKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A+DRAH+L GL  A+  +D ++ IIR S N +TAR+ L+                
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S +Q +AIL+L+L RL  L R  I +E   L   I    D+LS  
Sbjct: 410 ------------FDFSVIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++  ++K++   +K     PR T I  +G+++   ED +   D++VT+S  G++KRVP 
Sbjct: 458 EKIYALVKEDAKDLKGSYGQPRATEISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPA 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQ 612
           +V+R Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P   S  
Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRI 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + Q ERIT I+     +S   + +++ AT  G +++  L +F  +  SG
Sbjct: 578 AKGTAIVNLIPVTQDERITAILDL---KSFPADHFLLMATNKGEIKKTSLQEFTAVRSSG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAM L + DE+++    T+E DILL T++GQ +RFP+S +R  + R S GV+ I L+  
Sbjct: 635 LIAMDLATSDELVAAVETTEEKDILLATRMGQSIRFPVSELRT-SLRASGGVKAIVLS-- 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                                      K D  V  ++++E    
Sbjct: 692 -------------------------------------------KGDEVVSMDVAQE---- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++TV+E G GK T+  ++   +R+G G+    V  +++ G +VA   V++ DQ
Sbjct: 705 ----GTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSETDQ 758

Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895
           ++L+S  G + R  V E      I I  RAT+GV +    + +RVV+V 
Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807



 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 18/219 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I+  ++ G   R P +  R+   R   G+ G+   + D V  +++       +
Sbjct: 496 LVPHMDVIVTLSERGFIKRVPANVFRL-QHRGGTGIMGMPTREADAVRFLSV----SDTH 550

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--------KEQFI 800
           D  + +               ++ + +   +++   I   + + +           + F+
Sbjct: 551 DTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPADHFL 610

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  + KG  K+TS  +F     SG  + A D++  +E   LVA     +   I+L +  G
Sbjct: 611 LMATNKGEIKKTSLQEFTAVRSSG--LIAMDLATSDE---LVAAVETTEEKDILLATRMG 665

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             IR PV+E+R + RA+ GV     +K + VVS++  +E
Sbjct: 666 QSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQE 704



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 107/273 (39%), Gaps = 7/273 (2%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETC 690
           ++ F  ++   +   +V  ++ G ++R   + F   +R  +G + M     D +  +   
Sbjct: 488 VIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREADAVRFLSVS 547

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + +L  T  G+        I   A R + G   ++L    Q   +  +L   +   +
Sbjct: 548 DTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPAD 607

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFG 809
               M     + +  S             +++   S+E    ++  +E+ IL  +  G  
Sbjct: 608 HFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKDILLATRMGQS 667

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            R    + R S R+  G++A  +SK +E   +V++    +   +I V++ G      + E
Sbjct: 668 IRFPVSELRTSLRASGGVKAIVLSKGDE---VVSMDVAQEGTLVITVTENGAGKLTAIEE 724

Query: 870 IRIASRATKGVVIFS-TAKDERVVSVERIRESE 901
                RA  GV+ F    K   VV+ + + E++
Sbjct: 725 YPQQHRAGSGVINFKVVDKTGEVVASKVVSETD 757


>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
 gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
          Length = 874

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/918 (39%), Positives = 531/918 (57%), Gaps = 74/918 (8%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+ +        + +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MTDSVGPVGGGPGDSDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP+I    L+++I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y  GRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAELV +K+
Sbjct: 241 IRETYLGGRGSVTMRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS  M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L  R                            LS++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQDR--------------------------HGLSDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  +++   T RRT I++    + D D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQERYPTRRRTEILDLGGGLSDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + ED V      + H +++ F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E ITT++P  E     ++  +V  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSE---FSDDTDLVMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F +S 
Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L  GD ++SM ++    AD                        
Sbjct: 692 EELRPLGRTARGVRSMNLRDGDALVSMDVLPVELAD------------------------ 727

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                     +   S E  ++   +  ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 728 ----------QVAASAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 777

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+
Sbjct: 778 F--RTDTDELVGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRL 835

Query: 892 VSVERIRESEIVDEAEST 909
           + V  +      D A+ T
Sbjct: 836 LKVVLVPPEAEDDPADDT 853



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 110/301 (36%), Gaps = 27/301 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            + + L   + +T I  + +       ++ +  ++ G      L +     R  +I   L
Sbjct: 452 ADKIRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQ-----LQERYPTRRRTEI---L 503

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--- 735
           D    +  ++    E  ++L T+ G   R P+S       R + G  G      D V   
Sbjct: 504 DLGGGLSDIDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEDAVKLF 562

Query: 736 ISM----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           IS      +VL +D      +   +     R        ++  +  + ++   I      
Sbjct: 563 ISCNDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFS 622

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +    +  ++ ++  GF KRT    F  SN    G+ A ++ + +   AL  V      D
Sbjct: 623 D----DTDLVMLTRGGFIKRTRLSAF--SNIRSNGLIAINLEEGD---ALTWVRLAVPGD 673

Query: 852 QIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            +++ S  G  I  R+   E+R   R  +GV   +    + +VS++ +        A S 
Sbjct: 674 SVLIGSKAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADQVAASA 733

Query: 910 E 910
           E
Sbjct: 734 E 734



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 105/268 (39%), Gaps = 24/268 (8%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +  +V ++  G++KR  LS +   R    G   + + + D +T +
Sbjct: 609 EEAITTLIPVSEFSDDTDLVMLTRGGFIKRTRLSAFSNIRS--NGLIAINLEEGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP- 637
            +     SVL  S  G    ++     L      ARG   +  ++L  G+ + ++   P 
Sbjct: 667 RLAVPGDSVLIGSKAGMTIHFRLSDEELRPLGRTARG---VRSMNLRDGDALVSMDVLPV 723

Query: 638 ------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-D 682
                       E++++    +V+ A+  G  +R  ++ F    R+G    AMK  +  D
Sbjct: 724 ELADQVAASAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTD 783

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++ +       ++LL ++ G  VR           R + GVR   L KGD+++ + +V 
Sbjct: 784 ELVGLSVLGAGEELLLVSEKGVIVRTSA-DAIPQQSRAATGVRLQKLDKGDRLLKVVLVP 842

Query: 743 HADADYDERICYMKHMSAQRRLISGDTE 770
               D           S+     + + +
Sbjct: 843 PEAEDDPADDTLNDSESSDTETTNTEND 870


>gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 910

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/909 (37%), Positives = 512/909 (56%), Gaps = 97/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M   G   ++ Y
Sbjct: 37  DDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGY 96

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNFGS   DPPAA RYT
Sbjct: 97  SKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYT 156

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP
Sbjct: 157 ECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIP 216

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HN+ E+ +G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG 
Sbjct: 217 PHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGL 276

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R 
Sbjct: 277 ITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRT 335

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + 
Sbjct: 336 GQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQL 395

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT+YL  +A +R H+L GL  A+  +DE++R+IR S   E AR +LM+       
Sbjct: 396 EVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDARPKLME------- 448

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + +VQ  AIL ++L RL  + R  I +E   L  +I +
Sbjct: 449 -------------------FLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIAD 489

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G
Sbjct: 490 YNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSG 549

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++KR   + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + L
Sbjct: 550 FIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYEL 609

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++ 
Sbjct: 610 PEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRTGKVKKTALAEYD 666

Query: 667 QINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
              + G IA++L +        DE++    C   +DI+L +K G  ++F     ++   G
Sbjct: 667 SPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMG 726

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G+     D++++M +V                                     
Sbjct: 727 RQTAGVQGMKFRGDDELLAMDVVPED---------------------------------- 752

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             +Q +L V+ +GF KRT+  ++R+  R+G G++A  +++    
Sbjct: 753 -----------------SKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--R 793

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+LV    V+++DQ++ +   G +IR  V E++   R T+GV +    K + ++S+ R  
Sbjct: 794 GSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNE 853

Query: 899 ESEIVDEAE 907
           E+   DE E
Sbjct: 854 ET-GEDEVE 861


>gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
          Length = 910

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/909 (38%), Positives = 512/909 (56%), Gaps = 97/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M   G   ++ Y
Sbjct: 37  DDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGY 96

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNFGS   DPPAA RYT
Sbjct: 97  SKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYT 156

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP
Sbjct: 157 ECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIP 216

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HN+ E+ +G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG 
Sbjct: 217 PHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGL 276

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R 
Sbjct: 277 ITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRT 335

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + 
Sbjct: 336 GQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQL 395

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT+YL  +A +R H+L GL  A+  +DEV+R+IR S   E AR +LM+       
Sbjct: 396 EVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLME------- 448

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + +VQ  AIL ++L RL  + R  I +E   L  +I +
Sbjct: 449 -------------------FLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIAD 489

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G
Sbjct: 490 YNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSG 549

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++KR   + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + L
Sbjct: 550 FIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYEL 609

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  ++G+ + N+L     E I T++  P  E +    Y+V AT+ G V++  L+++ 
Sbjct: 610 PEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRTGKVKKTALAEYD 666

Query: 667 QINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
              + G IA++L +        DE++    C   +DI+L +K G  ++F     ++   G
Sbjct: 667 SPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMG 726

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G+     D++++M +V                                     
Sbjct: 727 RQTAGVQGMKFRGDDELLAMDVVPED---------------------------------- 752

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             +Q +L V+ +GF KRT+  ++R+  R+G G++A  +++    
Sbjct: 753 -----------------SKQDLLVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--R 793

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+LV    V+++DQ++ +   G +IR  V E++   R T+GV +    K + ++S+ R  
Sbjct: 794 GSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNE 853

Query: 899 ESEIVDEAE 907
           E+   DE E
Sbjct: 854 ET-GEDEVE 861


>gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786]
          Length = 850

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/845 (42%), Positives = 526/845 (62%), Gaps = 37/845 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELNAVKVEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L +G QVI+M +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLDEGQQVIAMLVAGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGR 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +         E  I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAV 844
            L  +
Sbjct: 829 GLQQI 833


>gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 893

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/928 (37%), Positives = 510/928 (54%), Gaps = 100/928 (10%)

Query: 1   MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++ +         +D    + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MSDEVEEIIGNEGLTDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G      + K +R+ GEVMG YHPHG++AIYDALAR+ Q WS+R  L+ G
Sbjct: 61  RRVLYAMYDGGYRPTASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L AR+PN
Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGA 229
           +LVNG  GIAVGMAT IP HNL E+  G    +++PD   + L+    E I GPDFPTGA
Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR
Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299

Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE+  R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    
Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP
Sbjct: 360 PRTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E Q  AIL L+L RL  L
Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I+ E   L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M 
Sbjct: 454 ERLKIQQESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + + +    ++
Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD---FL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L        DE++S    +   D+LL +  G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690

Query: 704 QCVRFPISAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           Q +RF      +    R + GV G+   + D +++M +V  +  D D             
Sbjct: 691 QSLRFHADDDTLRPTGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------- 737

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                                +  V+E G+ KRT+  D+ +  R
Sbjct: 738 -------------------------------------LFVVTEGGYAKRTNVVDYPVKGR 760

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G G++  ++ +    G LV     +  D+++ +   G ++R  V E+    R T+GV  
Sbjct: 761 GGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTF 818

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
                 +R+++V R  E ++ +  ++ +
Sbjct: 819 AKPDAGDRIIAVARSTERDMEEAVDAAD 846



 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 110/285 (38%), Gaps = 12/285 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  + +     + D +V  +  G VK+  LS Y + R GG     +   ++   D + 
Sbjct: 613 EEIAQVMELQDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELV 672

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              ++ST   +L  S  G   +       +  P  R  + +  +   + + +  +     
Sbjct: 673 SARLLSTGQDLLLVSHAGQSLRFHADDDTL-RPTGRATSGVTGMRFREDDYLLAMDVV-- 729

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
            + SW +  +   T+ G  +R  + D+    R G   K+A  +++R  ++        ++
Sbjct: 730 -DPSWQDADLFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGALVTDSGDE 788

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L     G+ VR  +  +    GR + GV       GD++I++A     D + +      
Sbjct: 789 VLCIMASGKVVRSAVVEV-SRTGRTTQGVTFAKPDAGDRIIAVARSTERDME-EAVDAAD 846

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              SA     +G+ +  T+ + ++      S      L+  E  +
Sbjct: 847 SAPSADSADSTGEEQAPTTPEGETGDSPADSAADTVALEDNESEV 891


>gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/898 (41%), Positives = 549/898 (61%), Gaps = 86/898 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++ ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G  +N+ Y K A
Sbjct: 1   MSQITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +   L DL K TVDFR NYD S QEP VL  + PN+L+NG  GIAVGMATNIP HNL
Sbjct: 121 SKLSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+++G V ++DNP+ +++ LM+ I+GPDFPTGA+  G  G++ AY TGRGSI IRGV +
Sbjct: 181 GELINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGKGLREAYLTGRGSIKIRGVVN 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+    R+ IV+TEIPY +NK++M+EKIA+LV E +I  ++DLRDESDR+G RVV++LK
Sbjct: 241 IEEKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA AD+I+N LY++T L+  F +NM+A+N  +P+   L  IL AF+  R EV++RRT++
Sbjct: 301 KGAIADIIINSLYKFTQLEQSFGINMMAVNANRPQLMNLKQILAAFLEHRREVIIRRTRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+K   RAH+L GL IA+ N+DEVV+IIR S N + AR  LM R               
Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDR--------------- 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+VQ +AIL++RL RLT L  + +  E   +  +I+    IL++  
Sbjct: 406 -----------FELSKVQAQAILDMRLQRLTNLEHEKLLEEYAEILKKIEYFKSILANEE 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G+I+ EL+ +KD   T R+T +++    D++ ED I  +D V+T+S  GY+KR PLS
Sbjct: 455 VLKGVIRDELVEIKDNYATERKTVLMDHNPDDIDIEDLIPDDDAVITLSRRGYIKRTPLS 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q+RGGKG +GV  +D DF+      S H  +L F+S G ++K KV ++P  S  AR
Sbjct: 515 NYQKQKRGGKGIAGVQTKDGDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L + E I T M   E E     L+V   TK G ++R+ ++ +    +SG  
Sbjct: 575 GAHIANLLPLEKDETIATAMTMREFEEECFFLFV---TKSGMIKRSSIALYRNCRQSGIR 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D +++V+  + +++ +L T+ G  +RF     R    R + GV+GI+L  GD+
Sbjct: 632 AVALKEGDALITVKEVSADSEAVLVTRNGTSIRFSCQDARAMG-RVASGVKGIALRPGDE 690

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S  +                                              EER Q   
Sbjct: 691 VVSGVV-------------------------------------------TGDEERVQ--- 704

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LT+SE G+GKRT     RI  R GKGI +  V+   + G ++    V+  D+++
Sbjct: 705 -----LLTISEGGYGKRTDIDQHRIQTRGGKGIISMRVTT--KTGKVLGSIMVSPEDEVV 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAESTE 910
           L++    +IR+ V ++ +  RAT+GV +      + VV  + +++   EI  E E  E
Sbjct: 758 LLTSGNKIIRMGVKDVSLVGRATQGVRLVRMDDGDHVVGFDLVQDANEEITSEPEGEE 815


>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
 gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 875

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/918 (38%), Positives = 535/918 (58%), Gaps = 69/918 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  SD    E +  I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPSDGGPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP+VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP++    LM +I GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR + V RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  T
Sbjct: 361 TLRKMLQVFLDFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L +                             L+E+Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQEH--------------------------HGLTEIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I    DIL  R R+  +I+ EL  ++++   PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIANYKDILGRRERVFALIEDELAKLREKHCLPRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++      S  ++ +++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVI---SFDDDTHLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ ++ G  + F +  
Sbjct: 632 KGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L  GD ++SM ++    AD   +                    
Sbjct: 692 EELRPLGRTARGVRAMNLRGGDSLVSMDVLPVELADQVAKS------------------- 732

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +    +DS     +S+           ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 733 LEDDPDDSVETVVVSD---------GPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIK 783

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                E   LV +  +   ++++LVS++G ++R   ++I   SRA  GV +      +R+
Sbjct: 784 F--RREGDELVGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRL 841

Query: 892 VSVERI-RESEIVDEAES 908
             V  +  +SE  D+ + 
Sbjct: 842 SEVVLVPPDSEDQDQPDD 859


>gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 867

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/926 (37%), Positives = 515/926 (55%), Gaps = 101/926 (10%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++  ++      + + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDEQMTDVRHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   +  + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPSSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    + +P+   + L+E    II GPDFPTGA ILGR
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATILGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V  +E+    R+ +VVTE+PYQVN   + +KIA+LVR+  I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVSVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299

Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE+  R G R+VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRT++ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWITHQIDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L             IDL+D  +             VQ  AIL L+L RL  L R  I
Sbjct: 420 RVGL-------------IDLLDVDA-------------VQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL++  R   II  EL  + D+    RRTRI+    +M  ED I
Sbjct: 454 MDEHAELKARVDDLNDILATPERQRAIISAELSEIVDKFGDERRTRILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +RD+D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    E I  ++     E +    Y+V ATK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---YLVLATK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V++  LS +      G IA+ L        DE++S +    + D++L ++ GQ VRF
Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRF 690

Query: 709 PISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  ++   GR++ GVRG+     D+++SM +                           
Sbjct: 691 TATDEQLRSMGRSTSGVRGMKFRGDDELLSMEV--------------------------- 723

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       +   +L V+E G+ KRT   ++   +R   G+
Sbjct: 724 --------------------------PHEGTDLLIVTESGYAKRTPVEEYPTKSRGTLGV 757

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           R   +  ++E G LV    V  ++ ++++++ G L++V  +++R  +R T GV+      
Sbjct: 758 RVGKL--VDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDD 815

Query: 888 DERVVSVERIRE---SEIVDEAESTE 910
            +R++++ R  +    E  D+A + E
Sbjct: 816 GDRIIAITRNSDSAGEEDEDDASAAE 841


>gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis]
          Length = 859

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/896 (39%), Positives = 541/896 (60%), Gaps = 88/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E +DGCVA I+   DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  + IE+   + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G 
Sbjct: 242 VIRSRAEIEQ-HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EV
Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R        
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q R+I+++RL  LTGL RD +R E   +   I    
Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+
Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P 
Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           G+  A+G+A+ N+L+++  +++   +       D+   N+ Y++F TK G +++  L  F
Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+
Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           G+ L     D+V+ M  + H +                                      
Sbjct: 694 GMRLDDDGQDEVVGMISIKHPE-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV 
Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           +  V D + +++++  G  IRV V ++ I  RAT+GV +   +K  + + SV  + 
Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVV 816


>gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
 gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
          Length = 850

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/845 (42%), Positives = 521/845 (61%), Gaps = 37/845 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L    QVI+M +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGR 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +         E  I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVD--------PEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAV 844
            L  +
Sbjct: 829 GLQQI 833


>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
 gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
          Length = 886

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/919 (38%), Positives = 539/919 (58%), Gaps = 64/919 (6%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        + ++ I    + +EM  SY+ YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADSVGPGGGGPGDSDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVD+  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I+NP+I    L+ +I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQILGRAG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y +GRGS+ +RGV+ +E        DR+ +++T +PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLSGRGSVTMRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L  R                            LS VQ  AIL+++L RLT L  D 
Sbjct: 421 ARTQLQDR--------------------------HGLSAVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+LG+I++EL+ +++    PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRERHSVPRRTEILDLAGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++   E     ++  ++  T
Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 QGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLAD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L KGD ++SM ++    AD                       +
Sbjct: 692 GELRPLGRTARGVRSMNLRKGDSLVSMDVLPAELAD-----------------------Q 728

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           I +  +D+    +  +     +  +  ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 729 IAASADDAGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 788

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+
Sbjct: 789 F--RTDADELVGLRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRL 846

Query: 892 VSVERI-RESEIVDEAEST 909
             V  +  E+E  D+ +  
Sbjct: 847 ADVVLVPPEAETDDDGDQA 865


>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 814

 Score =  737 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/896 (40%), Positives = 554/896 (61%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I ++ +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M  +G++ NK  
Sbjct: 3   ENQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+GKDTVDF PN+D    EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + +P+I +D L+EII GPDFPTGA+ILG++GIK AY TGRG I  R
Sbjct: 183 PHNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALILGKSGIKEAYKTGRGKIKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE    +RE+I++TEIPYQVNKA ++EKIA+LV+EKR+  I+D+RDESDR+G R+V
Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KR ++ +++LN LY+YT L++ F +  +AL   +P+   L  +++ +V  ++EVV R
Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGEPKILNLKELIEYYVDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KARDR H++ GL IA+ ++DE+++IIR S + +  ++    +           
Sbjct: 363 RTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ++AIL+++L RL+GL  + +  E + L   I   L IL
Sbjct: 412 ---------------FKLTEVQSQAILDMQLKRLSGLEIEKLNAENDELARMIDYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +K++    RRT+IV    ++E  +   RED+++T++  GY+KR+
Sbjct: 457 NSEETLINLIIDEMTEIKEKYADDRRTQIVPDEGEIEISELFEREDILITLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+S+G V+  + + +P  S 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG+A+INIL+L  GERIT +M   +      N  +V  TK+G +++    +F  I ++
Sbjct: 577 TSRGQAIINILNLESGERITEMMTLSD---LHKNSQIVLQTKNGTIKKTDAENFANIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    +E ++L++TK G  ++F    +R    R + GV+ I L K
Sbjct: 634 GIIAISLQENDKLISVRQIDKEEELLISTKNGMTIQFNSKDLRSMG-RIAQGVKAIKLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM I                                                   
Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K +E ++L V+E  +GK+TS  +F+  NR GKG++   V++  + G +V   PV+ ++
Sbjct: 702 --KGEETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKVVDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIVDEA 906
            I++VS  G +IR+ V +I I  R T GV + +   D +R+VSV +    E  +E 
Sbjct: 758 DIMMVSLSGDMIRLSVRDISITGRNTVGVKLKNLTDDKDRIVSVTKYSTLEEEEED 813


>gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43]
          Length = 850

 Score =  737 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/845 (42%), Positives = 523/845 (61%), Gaps = 37/845 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L    QVI+M +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLDDAQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGR 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +         E  I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVD--------AEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAV 844
            L  +
Sbjct: 829 GLQQI 833


>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
 gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 875

 Score =  737 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/918 (38%), Positives = 536/918 (58%), Gaps = 69/918 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  SD    E +  I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPSDGGPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP+VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP++    LM +I GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR + V RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  T
Sbjct: 361 TLRKMLQVFLDFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L +                             L+E+Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQEH--------------------------HGLTEIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I    DIL  R R+ G+I+ EL  ++++   PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKLREKHCLPRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++      S  ++ +++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVI---SFDDDTHLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ ++ G  + F +  
Sbjct: 632 KGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L  GD ++SM ++    AD                      + 
Sbjct: 692 EELRPLGRTARGVRAMNLRGGDSLVSMDVLPVELAD----------------------QV 729

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
             SL++D    G         +     ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 730 AKSLEDDQDESGET------VVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIK 783

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                E   LV +  +   ++++LVS++G ++R   ++I   SRA  GV +      +R+
Sbjct: 784 F--RREGDELVGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDRL 841

Query: 892 VSVERI-RESEIVDEAES 908
             V  +  +SE  D+ + 
Sbjct: 842 SEVVLVPPDSEDQDQPDD 859



 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 33/261 (12%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+      LD    +  ++    E  ++L T+ G   R P+S       R + G  G 
Sbjct: 497 PRRTEI----LDLGGGLEDIDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGT 551

Query: 728 SLAKGDQVISM--------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             ++G++ + +         ++L +D      +   +     R        ++  +  + 
Sbjct: 552 R-SQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREE 610

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           ++   +S     +    +  +L +++ GF KRTS   F     +G            E  
Sbjct: 611 AITSLLSVISFDD----DTHLLMLTKGGFIKRTSLSAFSKIRSNGLIAIGL-----EEGD 661

Query: 840 ALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER- 896
           AL  V      D +++ S  G  I  R+   E+R   R  +GV   +    + +VS++  
Sbjct: 662 ALTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVL 721

Query: 897 -------IRESEIVDEAESTE 910
                  + +S   D+ ES E
Sbjct: 722 PVELADQVAKSLEDDQDESGE 742


>gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83]
 gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83]
          Length = 859

 Score =  737 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/896 (39%), Positives = 542/896 (60%), Gaps = 88/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E +DGCVA I+   DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  + IE+   + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G 
Sbjct: 242 VIRSRAEIEQ-HNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EV
Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R        
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q R+I+++RL  LTGL RD +R E   +   I    
Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+
Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P 
Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           G+  A+G+A+ N+L+++  +++   +       D+   N+ Y++F TK G +++  L  F
Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+
Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           G++L     D+V+ M  + H +                                      
Sbjct: 694 GMTLDDDGQDEVVGMISIKHPE-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV 
Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           +  V D + +++++  G  IRV V ++ I  RAT+GV +   +K  + + SV  + 
Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVV 816


>gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
          Length = 813

 Score =  737 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/892 (38%), Positives = 522/892 (58%), Gaps = 83/892 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M  +   +N+ Y K AR+ 
Sbjct: 5   IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQD+S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TVDFRPNYD S +EP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG + ++D P   +  ++ +++GPDFPTGA I G  G+  AY TGRG+I IRG + +E+
Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGKGLTEAYTTGRGTIKIRGRAEVEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D   +V+ EIPY +NK++++EKIA L+ + RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 245 RKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKGV 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L++ F +NM+ +   +P    +  +L+ F+  R +V++RRT++ L 
Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIKQVLEHFLTHRRDVILRRTRFDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMER------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL +   L 
Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLR 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  ++D   TPR+T I+E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 459 GVIRDEIKEIQDRYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 519 QKRGGKGIAGVATAGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +   E        Y +F T+ G V+R     +     +G IA+ L
Sbjct: 579 ANLLPMDKEEFVATALSIREFSEE---RYFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGL 635

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+    E ++LL T+ G   RF IS +R   GR + GV+GI+L   D+V + 
Sbjct: 636 KENDELLTVKEIDDETEVLLATQQGLSNRFHISGVRP-TGRGAAGVKGIALKGNDRVAAG 694

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++                                                     +   
Sbjct: 695 VVIT---------------------------------------------------SVSRS 703

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LTVS  G+GKRTS   + I NR G G+    V+   + G ++    V D+D+++L++ 
Sbjct: 704 EVLTVSANGYGKRTSIEHYPIRNRGGSGVINMRVTP--KTGQVIGAVMVGDDDELLLLTS 761

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              +IR+ V+ I    RAT+GV++    +++ V+  + +  S++   A S E
Sbjct: 762 ANKIIRLSVSGISSVGRATQGVMLVRMDENDTVMGFDLVDPSDLDRCAPSGE 813


>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
 gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
          Length = 742

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/823 (43%), Positives = 513/823 (62%), Gaps = 84/823 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    RN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-RNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                     +  +L V++ G+GKRT   ++R+ +R GKG++ 
Sbjct: 709 ----------DVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741



 Score = 91.5 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 100/256 (39%), Gaps = 7/256 (2%)

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILS 686
            I  +    +++        +  T +G ++R   S +   NR   G   M  +  D +  
Sbjct: 489 TIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEH 548

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           + T +  + IL  T  G+  R     I  ++ R + G+  I+L   D+   +  ++    
Sbjct: 549 LLTTSTHDHILFFTNKGKVYRTKGYEIPEYS-RTAKGIPIINLLGVDKGEWINAIIPIRE 607

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSE 805
             D+   +        +     +          ++     +E     L   ++ I+  + 
Sbjct: 608 FGDDEFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTS 667

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G   R +  D R   R+  G++A  + + ++   +V +  V ++  +++V+  G   R 
Sbjct: 668 NGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQ---VVGMEIVEEDVNVLIVTKNGYGKRT 724

Query: 866 PVNEIRIASRATKGVV 881
           P++E R+ SR  KG+ 
Sbjct: 725 PIDEYRLQSRGGKGLK 740



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 17/247 (6%)

Query: 660 NKLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            ++ +     R  +I +       DE    +   ++N  +  T  G   R P S  +   
Sbjct: 474 TEVKERFNDKRRTEITIGGMESIEDE----DLIPEQNIAITLTHNGYIKRLPASTYKT-Q 528

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
            R   GV+G+     D V  +      D         ++   K         +     I 
Sbjct: 529 NRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPII 588

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           +L      E   +    +E    E F+   +++G  KRT    F  +N    G+ A  + 
Sbjct: 589 NLLGVDKGEWINAIIPIREFGDDE-FLFFTTKQGISKRTPLSSF--ANIRTNGLIAISLR 645

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + +E   +++V   + +  II+ +  G LIR    ++R   R   GV   +  ++++VV 
Sbjct: 646 EEDE---VISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVG 702

Query: 894 VERIRES 900
           +E + E 
Sbjct: 703 MEIVEED 709



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K +   R  ++   E     +      G +     ++L  ++   +T++  G+ KR  + 
Sbjct: 464 KVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPAS 523

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            ++  NR G+G++    +  + +  L      + +D I+  ++KG + R    EI   SR
Sbjct: 524 TYKTQNRGGRGVQGMGTNDDDFVEHL---LTTSTHDHILFFTNKGKVYRTKGYEIPEYSR 580

Query: 876 ATKGVVIFST---AKDERVVSVERIRESEIVD 904
             KG+ I +     K E + ++  IRE    +
Sbjct: 581 TAKGIPIINLLGVDKGEWINAIIPIREFGDDE 612


>gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
 gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
          Length = 814

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/885 (39%), Positives = 519/885 (58%), Gaps = 83/885 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++   +N+ Y K AR+ 
Sbjct: 5   INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQ++S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TV FRPNYD S  EP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG +  +DNP  D++ L+ +++GPDFPTGA I G  G+  AY TGRGSI IRG + IE+
Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGKGLIEAYTTGRGSIKIRGKAEIEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +V+ EIPY +NK++++EKIA L+ E RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 245 RKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKGV 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L++ F +NM+ +   +P    +  +L+ F++ R EVV+RRT + L 
Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIQQVLEHFLSHRREVVLRRTAFDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMER------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL +   L 
Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLR 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  +KD+  TPR+T I+E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 459 GVIRDEITEIKDKYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQ 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 519 QKRGGKGVAGVSTSGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +   E        Y +F T+ G V+R+    +     +G IA+ L
Sbjct: 579 ANLLPMDKEEFVATALAIREFSFE---RYFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTL 635

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+      ++LL T  G   RF IS IR   GR + GV+GI+L   D+V + 
Sbjct: 636 KEGDELLTVKEIDDNAEVLLATNQGLSNRFHISGIRP-TGRAAAGVKGIALKGQDRVAAG 694

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I+                                                         
Sbjct: 695 VIMTGNG---------------------------------------------------RN 703

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LT+S  G+GKRTS   + + NR G G+    V+   + G ++    VN +D+++L++ 
Sbjct: 704 EVLTISAHGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVNADDELLLLTS 761

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +IR+ V++I    RAT+GV++     +  V   + +  S+ +
Sbjct: 762 ANKIIRLSVSDISAVGRATQGVMLVRMEGEVTVTGFDLVDPSDPI 806


>gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 839

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/918 (38%), Positives = 512/918 (55%), Gaps = 93/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN + D +    A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  +  +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D ++S+ +V                           T  + +
Sbjct: 692 RPMGRATSGVQGMRFNADDYLLSLNVVREG------------------------TYLLVA 727

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +    I E   Q               G G  T  YD     R G+ + A  V +
Sbjct: 728 TSGGYAKRTAIEEYPVQ------------GRGGKGVLTVMYD----RRRGRLVGALIVDE 771

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +E+ A+ +   V       + +  G +        R A R TKGV + +  + + ++++
Sbjct: 772 DSELYAITSGGGV-------IRTAAGQV--------RKAGRQTKGVRLMNLGEGDTLLAI 816

Query: 895 ERIRES---EIVDEAEST 909
            R  E    E VDE++  
Sbjct: 817 ARNAEEAADEAVDESDGA 834


>gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
 gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
          Length = 814

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/896 (40%), Positives = 552/896 (61%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I +V +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK  
Sbjct: 3   EDNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVDF PN+D    EPVVL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + +P+I ++ L +II GPDFPTGA ILG+ GIK+AY+TGRG + +R
Sbjct: 183 PHNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYILGKAGIKDAYSTGRGKVKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE    +RE+IV+TEIPYQVNK+ ++EKIA+LV++KRI  I+D+RDESDR+G R+V
Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ++A+++LN LY+YT L++ F +  +AL    P+   L  +++ ++  +++VV R
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGVPKVLNLKELIEYYIEHQKDVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + +  ++   ++           
Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q++AIL+++L RL+GL  D +  E   L   I   L IL
Sbjct: 412 ---------------FGLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETIAYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   LL +I  E+  +K++    RR++I+    +++ E+ I +ED+++T++  GY+KR+
Sbjct: 457 NSEENLLNLIIDEMEEIKEKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+S G VY  K + +P GS 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q+RG A+INIL L  GE+IT +M   E      +  +V  TK G +++    +F  I ++
Sbjct: 577 QSRGIAIINILKLESGEKITEMMTLSELN---KDSQIVLQTKMGTIKKTDAENFTNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D ++SV    +E +++++TK G  ++F  + +R    R + GVR I L K
Sbjct: 634 GIIAISLKEYDRLISVRQIDKEEELIISTKNGMTIQFNSADLRSMG-RIAQGVRAIKLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM I                                                   
Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K  E ++L V+E  +GK+TS  +F+  NR GKG++   V++  + G ++   PV+ ++
Sbjct: 702 --KGDETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKIIDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906
            I++VS  G +IR+ V +I I  R T GV + +   +++R+VSV +    E  +E 
Sbjct: 758 DIMMVSLSGDMIRLNVRDISITGRNTVGVKLKNLTDENDRIVSVTKYSTLEEEEED 813


>gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 844

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/908 (39%), Positives = 515/908 (56%), Gaps = 89/908 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE I    + E   I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   
Sbjct: 13  TEEI--KQQLEGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAF 70

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+  +K Y K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+D
Sbjct: 71  ENGMTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSID 130

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  G
Sbjct: 131 GDSAAAMRYTEARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTG 190

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNL EV     A   N DI +  +ME ++GPDFPTGA I G +GI N +
Sbjct: 191 IAVGMATNIPPHNLTEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYF 250

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+ IR    IE     R  IVVTEIPY VNK  ++EKI ELV  K+I  I+DLRD
Sbjct: 251 NTGRGSVTIRSKYEIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES R G R+VIE+KR    +V+LN+L++ T+LQ+ FSVN +AL    P    +  ++K +
Sbjct: 311 ESSRDGIRIVIEVKRDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYY 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              + EV+VRRTK+ L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R 
Sbjct: 371 FEHQIEVLVRRTKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+E+QT+AILE+RL  LTGL  D ++ E   L 
Sbjct: 430 -------------------------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLL 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540
           + IK+  DIL +  R + II + L  + ++    RRT I+ G+   ++DED I  ED+VV
Sbjct: 465 LIIKDLEDILENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVV 524

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY KR+P+  Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+
Sbjct: 525 TMSKRGYFKRLPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYR 584

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P+GS Q++G   IN L + + E I TI+P    E       + F T  G ++R 
Sbjct: 585 LRGHEVPLGSRQSKGIPAINFLPIEKSESILTILPIDNYEQGS----LFFTTSKGIIKRA 640

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  I  +GKIA+ L   D++ SV      +++ +    G  +RF  +  R    R 
Sbjct: 641 NLSDFESIRANGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREMG-RI 699

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GI+L   + V+   +  H +                                   
Sbjct: 700 ATGVKGINLEDDEYVVGTGLSSHGE----------------------------------- 724

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++L V  KG GK T   D+R++ R  KG+    V+  +  G 
Sbjct: 725 ------------------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DRTGN 764

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV++  VN +++ ++++  G +IR+ + +I +  R T GV + S    E V S+   ++ 
Sbjct: 765 LVSIKVVNRDEEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKE 824

Query: 901 EIVDEAES 908
           EI D  + 
Sbjct: 825 EIDDNDDE 832



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 15/222 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +KR  LS + + R    G+  + +++ D +  +     +  V   +S G V +  
Sbjct: 632 TSKGIIKRANLSDFESIR--ANGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFN 689

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                     A G   +  ++L   E +           S +  YV+     G  +   +
Sbjct: 690 ENDAREMGRIATG---VKGINLEDDEYVVG------TGLSSHGEYVLAVGSKGLGKLTDI 740

Query: 663 SDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R  K    L   D    ++S++   ++ + L+ T  G+ +R  I  I V   R
Sbjct: 741 NDYRLTKRGAKGVNTLKVNDRTGNLVSIKVVNRDEEALIITTSGKVIRLSIQDISVIG-R 799

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           N+ GV+ ISL   ++V S+AI    + D ++      H +  
Sbjct: 800 NTSGVKLISLENKEEVKSIAIFKKEEIDDNDDEQQTSHGNEH 841


>gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4]
          Length = 850

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/845 (42%), Positives = 524/845 (62%), Gaps = 37/845 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ +  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+     R
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD------- 436
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAAGG 420

Query: 437 ----------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E  +   + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R    R + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPMG-REARGVRG 716

Query: 727 ISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + L  G QVI+M +       VL A  +   +   +   +   R   G     TS +N  
Sbjct: 717 MQLDDGQQVIAMLVAGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGR 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   + +         E  I+ ++  G   RT   + R   R+ +G+    + +  ++ 
Sbjct: 777 VVAATLVD--------TEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLS 828

Query: 840 ALVAV 844
            L  +
Sbjct: 829 GLQQI 833


>gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A
 gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 876

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/856 (42%), Positives = 535/856 (62%), Gaps = 24/856 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++G +A +++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + I   
Sbjct: 186 NLTEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYICAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A   V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T   L KARDRA +L  L+IA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++
Sbjct: 366 TILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAMLE 425

Query: 433 LIDDSSYTI-------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             DD++            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 426 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I    +D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILGSADRLMEVIREELELVREQFGDARRTDITANSVDINIEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  ARG+ ++N+L L   ER T I+P  E E   N   V  AT  G V++    +F
Sbjct: 606 VPEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVN---VFMATASGTVKKTPADEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF    +R    R + GVR
Sbjct: 663 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAMG-RTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHAD-----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           GI LA  D+V+S+ +           +   R          +   +     I   + + S
Sbjct: 722 GIKLAGEDKVVSLIVPRGEGRILTATENGYRKRTAVAEYPTKSRATQGVISIKVTERNGS 781

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V G +  + C +       I+ +++ G   R    +  I  R+ +G+     ++   + A
Sbjct: 782 VVGAVQVDDCDQ-------IMMITDAGTLVRIRVSEVSIVGRNTQGVILIRTAEDENVVA 834

Query: 841 LVAVFPVNDNDQIILV 856
           L  V    D++++  +
Sbjct: 835 LQRVAEPVDDEELDAI 850



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 78/437 (17%), Positives = 160/437 (36%), Gaps = 36/437 (8%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+       E ++   K LL +  +  H+L      +  + E + ++R       ARR  
Sbjct: 462 LQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELVR--EQFGDARRTD 519

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  +    +I+DLI   D     + +       + Q     E +     G     I+ E 
Sbjct: 520 ITANSVDINIEDLITQED----VVVTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEED 575

Query: 477 -LNSLG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLD 526
            ++ L      + +   SSR RL      ++  V +     R   IV        E    
Sbjct: 576 FIDRLLVANTHDTILCFSSRGRLY---WMKVYQVPEASRGARGRPIVNLLPLEANERYTA 632

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +           V   +  G VK+ P   +   R    G   V + + D +  + + S  
Sbjct: 633 ILPVREYEEGVNVFMATASGTVKKTPADEFSRPRSA--GIIAVNLNEGDELIGVDLTSGQ 690

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ FS+ G V + K   +      A G   +  + L   +++ +++            
Sbjct: 691 DEVMLFSAAGKVVRFKEDDVRAMGRTATG---VRGIKLAGEDKVVSLIV------PRGEG 741

Query: 647 YVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLG 703
            ++ AT++G  +R  ++++   +R+  G I++K+      ++        + I++ T  G
Sbjct: 742 RILTATENGYRKRTAVAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAG 801

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VR  +S + +   RN+ GV  I  A+ + V+++  V     D +E        +    
Sbjct: 802 TLVRIRVSEVSIVG-RNTQGVILIRTAEDENVVALQRVAEP-VDDEELDAIDGSAAEGDE 859

Query: 764 LISGDTEEITSLKNDSS 780
            I+ + +    +  D  
Sbjct: 860 DIAPEADTDDDIAEDEE 876


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/836 (43%), Positives = 522/836 (62%), Gaps = 35/836 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  VSI+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K
Sbjct: 3   ERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA RYTE 
Sbjct: 63  SARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 123 RMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  + ++ +PD+ +  LME + GPDFPTGA I+GR GI+ AY TGRGSI +R  
Sbjct: 183 QLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITLRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    +E I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R+VIE
Sbjct: 243 AEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+ RRT
Sbjct: 303 VRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQPKVLNLKQCLQHYLDHQKIVIRRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  RAH+L GL IA+ +LDEV+ +IR S   + A+  LM +             
Sbjct: 363 QFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL++RL RLTGL R+ I  E   L   I     IL+ 
Sbjct: 410 -------------FQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L II+ ELL +K++ +  RRT IV G L+ ++DED I RE++VVT++H GY+KR+P
Sbjct: 457 EQKVLQIIRDELLEIKEKFNDYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLP 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S YR+QRRGG+G  G+   ++DFV  L I STH  VLFF++ G VYK K + +P  S  
Sbjct: 517 VSTYRSQRRGGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRT 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N+L++ + E I T++     E    + ++ F TK G  +R+ LS F  I   G
Sbjct: 577 AKGIPIVNLLNIEKDEVINTVIAI---EQFREDAFLFFTTKQGIAKRSPLSSFANIRNHG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++SV+       I++ TK G  +RFP + +R    R + GV+ I+L  G
Sbjct: 634 LIAIHLHEGDELISVKLTDGHKHIIVGTKNGMLIRFPETDVRSMG-RTAAGVKAITLCSG 692

Query: 733 DQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           D+V+ M  +    +     R  Y K   A    I     +     N +   G++   +  
Sbjct: 693 DEVVGMESLNGDEEILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGDVVAVKTV 752

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                E+ ++ ++  G   R +  D  I  R+ +G++   + + NE   +  V  V
Sbjct: 753 ---TGEEDLMLMTASGVMIRMAVSDISIMGRNTQGVKLIRLDEENEQEYVATVAKV 805


>gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 816

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/892 (37%), Positives = 504/892 (56%), Gaps = 87/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + +E+++SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ + K
Sbjct: 12  QKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE MGKYHPHG+AAIY+ + RM+QD+S+R  L++GQGNFGS+DGDPPAA RYTE 
Sbjct: 72  SARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEA 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL      +L D+ +DTVD+ PN+D S +EP VL +R PN+LVNG  GIAVGMATN+P H
Sbjct: 132 RLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C  ++DNPD+++  LM  + GPDFPTG VI+GR GI +AY TGRG IV+RG 
Sbjct: 192 NLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIVVRGC 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     ++ IV+T+IPY VNK+ ++E I + V+  ++  I D+RDES+R+G R+V+E
Sbjct: 252 AEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGIRLVLE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L R +   ++L QLY  T LQ+ F V  +AL   +P    L G+L+ F+  R  VV RRT
Sbjct: 312 LHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMVVRRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAH+L GL  A+  +D V+ +IR S +P  A+  L++              
Sbjct: 372 QYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE------------- 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                        +  +E Q +AIL++RL RLT L +  ++ EL  L  +I     IL  
Sbjct: 419 -------------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGD 465

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + L  ++++ELL VK      RRT I + + D+  ED I   ++VV ++  G+++R+PL
Sbjct: 466 PAELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVVAMTRDGFIRRMPL 525

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGGKG  G  ++ ED V+ + + +TH S+  F+  G V+  K   +P      
Sbjct: 526 QDYRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPE-PKSG 584

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK +   +SL++GE + T      D +     +V   TK G  +R  + +   I R+G+
Sbjct: 585 RGKHVSTFISLDEGESVVTF----RDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGR 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + L+  D I  V     E+ +LLTT  GQ +R   +  R   GR + GVRGI L   D
Sbjct: 641 RILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRP-QGRAAKGVRGIKLDPDD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+   +++                                                   
Sbjct: 700 LVVGCDVIMPG------------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
               + +L +S+ G GKRT   +F + +R G G+RA  + +    G LV  + V D+D+I
Sbjct: 711 ----RQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGER--TGHLVGAWGVADDDEI 764

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++++ +G ++R    ++   SR+  G+ +    + ++V  V  IR S    E
Sbjct: 765 MVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRCSMEEGE 816


>gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
 gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
          Length = 848

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/898 (40%), Positives = 552/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++    Y
Sbjct: 3   EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD++ RMAQ WS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD R N+D +  EPVVL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G +A IDN +ID+D LM+ I  PDFPTG +I G  G+K+A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIYGYDGVKDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE+    RE I+V+EIPYQVNKA M++K AELV EK+I  I+++RDESDR G R+V
Sbjct: 243 AKSVIEEVK-GRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA  RAH+L GL IA  N+DEV+  IR S N + AR +L+ R           
Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E +++   I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK EL  +KD+    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYEIIKGELAHIKDKYGDDRRSVIEYAGGDMSIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++ Q +++   +   +  DE+  N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEQDDKVKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L  K G+ +RF  +  R    R + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALKSGKSIRFEEAKTRPMG-RTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+VI M  V   +++                                         
Sbjct: 695 QHDKDEVIGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKGFGKR+   D+RI+NR GKG++  ++S+  + G LVA+  V+
Sbjct: 714 -----------ILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D++ +++++  G  IR+ V ++R+  RAT+GV + +   ++ + +V ++   E V E 
Sbjct: 761 DSNDLMIINRSGLTIRMAVEDLRVMGRATQGVRLINIKDNDSIAAVAKVAHEEEVPED 818


>gi|307693840|ref|ZP_07636077.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
          Length = 852

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/913 (39%), Positives = 547/913 (59%), Gaps = 92/913 (10%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++      EE    ++ I +  +  EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSKKPQYDPEEIRFPDQVIKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M + G+  +K + K A   G+V+G+YHPHG+ ++YDAL R+ QD+S+R +L++G GNF
Sbjct: 61  YAMYEDGLTSDKPFKKSATCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGDPPAA RYTE R+ K ++ +L D+ K+TVD+ PN+D S +EP VL +R+PN+LVN
Sbjct: 121 GSIDGDPPAAYRYTEARMSKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNL EV++  + V+DN +  LD LME I+GPDFPT  +I+GR+GI
Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIMGRSGI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AYATG+G I +R  +  E+   DR +I+VTEIPYQVNK  +++ +A+ V +KR+  I+
Sbjct: 241 RAAYATGKGHIRVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLI 355
           D+RDESDR G R+VIELKR A+  V+LN+L   T LQ  F++NM+AL  +  +P+  TL 
Sbjct: 301 DIRDESDRNGMRIVIELKRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++AF+E+++ RRT Y   KA++RAH+L GL IA  N+DEV++IIR S +   A+ 
Sbjct: 361 EILDEYIAFQEQIITRRTIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYDN--AKE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            L +VQ +AIL++RL  L GL R+ +  
Sbjct: 419 RLMTR--------------------------FGLDDVQAQAILDMRLKALQGLDREKLEA 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I     +LS    L  ++K EL  ++D+    R+T I     D++ ED I  
Sbjct: 453 EYKELEERIAYYDKLLSDEGLLRQVLKDELTEIRDKYGDQRKTEIAFVEDDLDIEDLIEE 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  V T++  GY+KR P+S Y AQ +GG+GR G+  RDED V D+F  STH  + FF+  
Sbjct: 513 EQCVFTLTQAGYIKRTPVSEYAAQSKGGQGRKGITTRDEDCVVDVFTASTHDYLFFFTDT 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY++K +++P     A+G  ++NIL + QGE++ T++   E ++   +LY+V  T++G
Sbjct: 573 GKVYRKKGYQIPESGKTAKGTNIVNILQVEQGEKVQTMIHTRELDN--PDLYLVMVTRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R  ++    I  SG  A++L+  D+++SV        IL+ T  G  V F  + +R 
Sbjct: 631 TVKRLPVTALKNIRNSGIRALRLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRP 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R++VGVRGI L +GD V+S                                      
Sbjct: 691 MG-RDAVGVRGIRLREGDYVVS-------------------------------------- 711

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                 + +LT++EKG+GKRT   D+RI+NR G GI+   V++ 
Sbjct: 712 ---------------AARATAGRTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTE- 755

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSV 894
            + G +V +  V+ ++ ++LV+  G LIR  V+ IR A RAT+GV++     + ++V+S+
Sbjct: 756 -KTGKIVGIKVVDGSEDLLLVTQAGILIRTHVDAIREAGRATQGVIVMRFKEEGDKVISL 814

Query: 895 ERIRESEIVDEAE 907
                 E  + A+
Sbjct: 815 ALAEREETAEVAQ 827


>gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
 gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
          Length = 854

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/905 (40%), Positives = 549/905 (60%), Gaps = 87/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF+ N+D + QEPVV+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG  I G +G+++AY TGRG +++
Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE +    ++IVV EIPY VNK  ++E IA LV EK+I  I+ + DESDR+G R+
Sbjct: 242 RAKAEIE-SHPTHDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R EV++
Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIQLFVEHRHEVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R          
Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FQLSEVQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +      +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LVNEELCKKVIKDELIEVKEKYGDKRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIDADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R    R + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMG-RTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M  +   D   +  +   ++   +R                        
Sbjct: 694 LDEDGQDEVIGMICI--KDPLKETIMVVSENGYGKR------------------------ 727

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                    +   D+R +NR GKG++  +++  ++ G LVA+  
Sbjct: 728 -------------------------SDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K ++++ SV ++  SE  +E
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEKRNDQIGSVCKVT-SETEEE 819

Query: 906 AESTE 910
               E
Sbjct: 820 GSVAE 824


>gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 844

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/908 (39%), Positives = 515/908 (56%), Gaps = 89/908 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE I    + E   I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   
Sbjct: 13  TEEI--KQQLEGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAF 70

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+  +K Y K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+D
Sbjct: 71  ENGMTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSID 130

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  G
Sbjct: 131 GDSAAAMRYTEARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTG 190

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNL EV     A   N DI +  +ME ++GPDFPTGA I G +GI N +
Sbjct: 191 IAVGMATNIPPHNLTEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYF 250

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+ IR    IE     R  IVVTEIPY VNK  ++EKI ELV  K+I  I+DLRD
Sbjct: 251 NTGRGSVTIRSKYEIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES R G R+VIE+KR    +V+LN+L++ T+LQ+ FSVN +AL    P    +  ++K +
Sbjct: 311 ESSRDGIRIVIEVKRDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYY 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              + EV+VRRTK+ L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R 
Sbjct: 371 FEHQIEVLVRRTKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+E+QT+AILE+RL  LTGL  D ++ E   L 
Sbjct: 430 -------------------------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLL 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540
           + I++  DIL +  R + II + L  + ++    RRT I+ G+   ++DED I  ED+VV
Sbjct: 465 LIIEDLEDILENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVV 524

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY KR+P+  Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+
Sbjct: 525 TMSKRGYFKRLPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYR 584

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P+GS Q++G   IN L + + E I TI+P    E       + F T  G ++R 
Sbjct: 585 LRGHEVPLGSRQSKGIPAINFLPIEKSESILTILPIDNYEQGS----LFFTTSKGIIKRA 640

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  I  +GKIA+ L   D++ SV      +++ +    G  +RF  +  R    R 
Sbjct: 641 NLSDFESIRANGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREMG-RI 699

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GI+L   + V+   +  H +                                   
Sbjct: 700 ATGVKGINLEDDEYVVGTGLSSHGE----------------------------------- 724

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++L V  KG GK T   D+R++ R  KG+    V+  +  G 
Sbjct: 725 ------------------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DRTGN 764

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV++  VN +++ ++++  G +IR+ + +I +  R T GV + S    E V S+   ++ 
Sbjct: 765 LVSIKVVNRDEEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKE 824

Query: 901 EIVDEAES 908
           EI D  + 
Sbjct: 825 EIDDNDDE 832



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 15/222 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +KR  LS + + R    G+  + +++ D +  +     +  V   +S G V +  
Sbjct: 632 TSKGIIKRANLSDFESIR--ANGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFN 689

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                     A G   +  ++L   E +           S +  YV+     G  +   +
Sbjct: 690 ENDAREMGRIATG---VKGINLEDDEYVVG------TGLSSHGEYVLAVGSKGLGKLTDI 740

Query: 663 SDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R  K    L   D    ++S++   ++ + L+ T  G+ +R  I  I V   R
Sbjct: 741 NDYRLTKRGAKGVNTLKVNDRTGNLVSIKVVNRDEEALIITTSGKVIRLSIQDISVIG-R 799

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           N+ GV+ ISL   ++V S+AI    + D ++      H +  
Sbjct: 800 NTSGVKLISLENKEEVKSIAIFKKEEIDDNDDEQKTSHGNEH 841


>gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400]
 gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 909

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/890 (43%), Positives = 543/890 (61%), Gaps = 49/890 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I++P + ++ LME I GPDFPT A I GR GI +AY TGRG  ++R  
Sbjct: 186 NLTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYNTGRGRAIMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+V EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++ 
Sbjct: 366 VFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L + I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELLVLIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL + SRL+ +IK+EL  + ++    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GE IT I+P  E     ++ Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGEHITAILPVREYA---DDKYIIMATAHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV---------- 715
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF   A             
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAE 722

Query: 716 ---------FAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSA 760
                      GR + GVRGI L  G +V+S+ +      +L    +   +   +    A
Sbjct: 723 TGEEIIALRPMGRTATGVRGIKLDAGQKVVSLIVPKGDGAILTVTENGYGKRTELSEYPA 782

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           + R   G      S +N   V         +        I+ +S KG   RT +    I 
Sbjct: 783 KSRGTKGVVSIKVSERNGEVVGAVQVGTFDE--------IMLISNKGTLVRTPAEGVSII 834

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            R+ +G+     ++  ++  L  +  +   +   L+ ++G +I  PV+++
Sbjct: 835 GRNTQGVTIIRTAEDEKVVGLQRIEEIQTEE---LLDEEGNVI--PVSDV 879


>gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 809

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/884 (41%), Positives = 532/884 (60%), Gaps = 86/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM++SYL YA++VI+ RA+PD+RDGLKPV RR L+ M Q+G+  + +Y K A
Sbjct: 6   VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+  YHPHG++A+YD L RMAQD++LR  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 66  GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD S +EPVVL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ DG + +ID+PD  ++ L +I++GPDFPTG +ILGR GI +AY TG+G I++R  +H
Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIILGREGILSAYGTGKGKIIVRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G+R  I+VTE+PYQVNKAA++EKIAELV+E+RI  I+D+RDESDR G R+VIEL+
Sbjct: 246 IEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIELR 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           R A    +LNQLY++T +Q+ F VN +AL     P   TL  +++ ++  R+ V+ RRT+
Sbjct: 306 REAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRTE 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR RAHVL GL IA++NLD V+  IR S + + A+ +LMQ               
Sbjct: 366 YDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQ--------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ +AIL+++L RL  L R  I +EL  +  +I+E   IL+S 
Sbjct: 411 -----------DFGLTEVQAQAILDMQLRRLAALERQKIEDELKEVRAQIREYESILASP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L I+K +L  ++D+    RRT+IVE   D+ DED I   ++ V+V+  GY+KR+P  
Sbjct: 460 EKVLAIVKSDLQEIRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPD 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGG+G +GV ++D D V  L + +T  SVLFF++ G VY+ K   +P  S  ++
Sbjct: 520 TYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSK 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  L+N+++L   ER+T ++   E +    + Y+   TK+G ++R  L ++  +  +G I
Sbjct: 580 GLPLVNLINLEPHERVTEVIAVREFK---PDRYLTTITKNGKIKRTSLEEYSSVRSNGLI 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM L+  DE+  V      +DIL+ T  GQ +RFP S +R   GR ++GV  I L++G  
Sbjct: 637 AMSLEEGDELRDVRLLGDNDDILVLTAKGQSIRFPASDVRP-TGRQAIGVTAIRLSEG-- 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                                               E    E+ 
Sbjct: 694 ---------------------------------------------------DEVVAMEVV 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL V++KGFGKRTS  +F    R+G G RA  + +  + G L       ++ +++
Sbjct: 703 QSGAEILLVTKKGFGKRTSIDEFNRQARAGSGARAIKIDE--KTGDLATARMAPEDSEVL 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + S  G ++R+  N I   S+A +GV + +   ++ V S+  I 
Sbjct: 761 IASASGQVVRLKTNTISKQSKAARGVSLMTLKPNDSVTSLAIIA 804



 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 107/276 (38%), Gaps = 17/276 (6%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLS--DFIQINRSGKIAMKLDSRDEILSVETCTQE 693
             +++   N    V  T  G ++R         +    G   + +   D +  +  C   
Sbjct: 492 IRDEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTM 551

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  T  G+  +     I   + R S G   V  I+L   ++V  +  V     D   
Sbjct: 552 DSVLFFTNKGKVYQIKAHEI-PDSSRTSKGLPLVNLINLEPHERVTEVIAVREFKPDR-- 608

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI---SEERCQELKLKEQFILTVSEKG 807
              Y+  ++   ++     EE +S++++  +  ++    E R   L      IL ++ KG
Sbjct: 609 ---YLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDVRLLGDNDDILVLTAKG 665

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
              R  + D R + R   G+ A  +S+ +E   +VA+  V    +I+LV+ KG   R  +
Sbjct: 666 QSIRFPASDVRPTGRQAIGVTAIRLSEGDE---VVAMEVVQSGAEILLVTKKGFGKRTSI 722

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +E    +RA  G       +    ++  R+   +  
Sbjct: 723 DEFNRQARAGSGARAIKIDEKTGDLATARMAPEDSE 758



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 97/226 (42%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E + ++        +  + T++  G +KR  L  Y + R    G   + + + D + D+ 
Sbjct: 593 ERVTEVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSVRS--NGLIAMSLEEGDELRDVR 650

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           ++  +  +L  ++ G   +     +     QA G   +  + L++G+ +  +      E 
Sbjct: 651 LLGDNDDILVLTAKGQSIRFPASDVRPTGRQAIG---VTAIRLSEGDEVVAM------EV 701

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
             +   ++  TK G  +R  + +F +  R+G  A  +   ++   + +     +++++L+
Sbjct: 702 VQSGAEILLVTKKGFGKRTSIDEFNRQARAGSGARAIKIDEKTGDLATARMAPEDSEVLI 761

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            +  GQ VR   +       + + GV  ++L   D V S+AI+ + 
Sbjct: 762 ASASGQVVRLKTN-TISKQSKAARGVSLMTLKPNDSVTSLAIIANN 806


>gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
 gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
          Length = 880

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/856 (42%), Positives = 520/856 (60%), Gaps = 28/856 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    VS+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS +EP+VL  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLRNPEASIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKVHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  ++K F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPKLCNLKDLIKVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + IIR +P P  A+ ELM + W++  ++
Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKLVR 421

Query: 429 DLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                    +  Y +GSDG   LS+ Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDME 528
           I  E   +  EI++ LDIL+   R+  II +EL ++K E        RR+ +     D+ 
Sbjct: 482 IVAEYKEVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQTKLGARRSLVEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++    E  S   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC--YMKHMSAQRRLI 765
           F  + +R    RN+ GVRG+ L  G  VI+M +               Y K  S      
Sbjct: 722 FDENDVRPMG-RNARGVRGMMLEDGQGVIAMLVAEDELQSVLTATVNGYGKRTSITEYTR 780

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            G   +       S   G +       L   +  I+ +++KG   RT   + R   R+ +
Sbjct: 781 HGRGTKGMIAITQSERNGKV---VAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQ 837

Query: 826 GIRATDVSKINEIGAL 841
           G+    + + +++  L
Sbjct: 838 GVTLIGLDEGSKLSGL 853


>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
          Length = 855

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/895 (41%), Positives = 552/895 (61%), Gaps = 82/895 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
              ++V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K
Sbjct: 38  SNESNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE 
Sbjct: 98  SARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEA 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ KDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 158 RMAKITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G 
Sbjct: 218 NLGEVVDGIIALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGR 277

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E +   +E I+VTE+PYQVNKA ++EKIA+LVR+K+I  I+DLRDE+DR G R+VIE
Sbjct: 278 VEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIE 337

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G  +++ILN LY++T LQ+ F V M+AL    P    L  IL+ ++  R EV+ RRT
Sbjct: 338 LKKGEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQILQKYLEHRFEVITRRT 397

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA++RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +             
Sbjct: 398 EFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAK------------- 444

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE+Q +AIL++RL RLTGL RD I  E N L + I+E   ILS 
Sbjct: 445 -------------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSD 491

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++ GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +
Sbjct: 492 DSKIYGIIKEEGLKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAI 551

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGG G +     ++D V D++I     ++L F++ G V+  KV+ +P    QA
Sbjct: 552 DTYRSQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQA 611

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK + NI++L+  E+++TI+   E E + N   + F T++G V++++L+ F  I ++GK
Sbjct: 612 RGKLIGNIINLDDDEKVSTIIKVREFEKNKN---LFFVTRNGVVKKSELTLFDNIKKAGK 668

Query: 674 IAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A++L+  DE++ +     + E++I   TK G  +RF    +R      + GVRGI+L  
Sbjct: 669 RAIRLNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSMGT-GAAGVRGINLRD 727

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+++  AI+       D RI  +                                    
Sbjct: 728 EDKIVGAAIISSEMNKDDARILTIT----------------------------------- 752

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                        E+G+GKRT   ++R+++R GKGI    +++  + G +V V  V D+D
Sbjct: 753 -------------EEGYGKRTKLLEYRLTSRGGKGIINAKLNE--KTGKIVDVKIVKDDD 797

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +I+L++ +GTLIR  V ++ +  R+  GV I     +E++ S+ +I E   +D+ 
Sbjct: 798 EIMLITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKIASIVKITEEPKLDDE 852


>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 550/900 (61%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L +R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ E S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFEESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D +                                          
Sbjct: 695 IDTDFVVDADVISSEDQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 713 ----------ILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132]
 gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132]
          Length = 815

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/890 (40%), Positives = 538/890 (60%), Gaps = 86/890 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +++I  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M  +G  +N+ Y K AR
Sbjct: 3   DTITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMA 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +     L D+ K+TVDF PNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 123 RLCSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLG 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++DG V ++DNP+  +++LM+ I+GPDFPTG  I G  G+ +AY TGRGSI IRGV  +
Sbjct: 183 ELIDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGGQGLIDAYTTGRGSIKIRGVVEL 242

Query: 257 EKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E+     +E I++ EIPY +NK+ ++EKIA LV EK+I  +ADLRDESDR+G R+V+ELK
Sbjct: 243 EEARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA AD+I+N LY++T L++ F +NM+A+ G +P    L  +L  F+  R EV++RRTK+
Sbjct: 303 RGAIADIIINSLYKFTPLETSFGINMMAVVGKRPMLLNLKEVLGHFLEHRREVIIRRTKF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+K   R H+L GL IA+ N+DEVV++IR S  PE AR  LM R               
Sbjct: 363 DLDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSR--------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL +LTGL  D +  EL  L  +I+    ILS+  
Sbjct: 408 -----------FSLSDIQAKAILDMRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDE 456

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G+I+ EL  +K    TPR++ ++   LD ++ ED I  E+ V+T+S  GY+KR PLS
Sbjct: 457 VLKGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLS 516

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQ+RGGKG +GV   D DF+    + + H  ++ F++ G ++K KV ++P GS  A+
Sbjct: 517 NYTAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAK 576

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L++ E I T +   E     ++ + +F TK G ++R+ +  +     +G  
Sbjct: 577 GGHVNNLLPLDKDEHIATCLSLREFA---DDRFFLFVTKKGMIKRSSIGLYGNCRTTGIR 633

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     E D +L ++ G  +RF I+  R    R + GV+G++L   D+
Sbjct: 634 AVNLRDHDELMDVREIEPEVDCILVSREGSAIRFNINDARPMG-RATAGVKGMALRPNDE 692

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++  +    + D                                               
Sbjct: 693 VVACVVTGDQERDQ---------------------------------------------- 706

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LTVSE G+GKRT+   +R+  R GKGI    ++  N+ G +V    VN++D +I
Sbjct: 707 -----LLTVSEGGYGKRTTIDQYRVQTRGGKGILNMRLT--NKTGMVVGACMVNESDDVI 759

Query: 855 LVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIV 903
           L++ +  +IR+ V+E+     RAT+GV +     D +V+  + + + +  
Sbjct: 760 LLTSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDNKVIGFDLVMDDDED 809



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 89/226 (39%), Gaps = 12/226 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +   + V+  G +KR  + +Y   R    G   V +RD D + D+  +      +
Sbjct: 599 REFADDRFFLFVTKKGMIKRSSIGLYGNCR--TTGIRAVNLRDHDELMDVREIEPEVDCI 656

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +   + +    P  R  A +  ++L   + +   +   + E       ++ 
Sbjct: 657 LVSREGSAIR---FNINDARPMGRATAGVKGMALRPNDEVVACVVTGDQERDQ----LLT 709

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            ++ G  +R  +  +    R GK  + +   ++   ++      + +D++L T   + +R
Sbjct: 710 VSEGGYGKRTTIDQYRVQTRGGKGILNMRLTNKTGMVVGACMVNESDDVILLTSQNKIIR 769

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +S +    GR + GVR + +   ++VI   +V+  D D  E   
Sbjct: 770 MSVSEVSQTRGRATQGVRLVRMDDDNKVIGFDLVMDDDEDLGEVQA 815


>gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
 gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
          Length = 809

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 528/889 (59%), Gaps = 94/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K 
Sbjct: 5   NTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DP AA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 LAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+      +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +
Sbjct: 185 LAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HI +    R+ I VTEIPYQVNKA ++ KIAELV+E+++  I+DLRDESDRQG RVVIEL
Sbjct: 245 HIGEVET-RKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A+DRAH+L GL  A+  +D ++ IIR S N + AR+ L+                
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S VQ +AIL+L+L RL  L R  I +E   L   I    D+LS  
Sbjct: 410 ------------FDFSVVQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++  ++K++   +K     PR T I  +G+++   ED +   D++VT+S  G++KRVP 
Sbjct: 458 EKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPA 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQ 612
           +V+R Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P   S  
Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRI 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + Q ERIT I+     +S   + +++ AT  G +++  L +F  +  SG
Sbjct: 578 AKGTAIVNLIPVTQDERITAILDL---KSFPADHFLLMATNKGEIKKTSLQEFTAVRSSG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAM L + DE+++     +E DILL T+LGQ +RFP+S +R  + R S GV+ I     
Sbjct: 635 LIAMDLTASDELVAAVETIEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAI----- 688

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
             V+SM                                       D  V  ++++E    
Sbjct: 689 --VLSM--------------------------------------EDEVVSMDVAQE---- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++TV+E G GK T+  ++   +R+G G+    V  +++ G +VA   V+  DQ
Sbjct: 705 ----GTMVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSVTDQ 758

Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895
           ++L+S  G + R  V E      I I  RAT+GV +    + +RVV+V 
Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 92/219 (42%), Gaps = 18/219 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I+  ++ G   R P +  R+   R   G+ G+   + D V  +++       +
Sbjct: 496 LVPHMDVIVTLSERGFIKRVPANVFRL-QHRGGTGIMGMPTREADAVRFLSV----SDTH 550

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--------KEQFI 800
           D  + +               ++ + +   +++   I   + + +           + F+
Sbjct: 551 DTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITAILDLKSFPADHFL 610

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  + KG  K+TS  +F     SG  + A D++  +E   LVA     +   I+L +  G
Sbjct: 611 LMATNKGEIKKTSLQEFTAVRSSG--LIAMDLTASDE---LVAAVETIEEKDILLATRLG 665

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             IR PV+E+R + RA+ GV     + ++ VVS++  +E
Sbjct: 666 QSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMDVAQE 704



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 123/350 (35%), Gaps = 83/350 (23%)

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            +N+L+L  G+    ++   E   ++ +   +  T+          D   I    K A  
Sbjct: 327 FVNMLALVDGQP--QVLSLKEVLKNFIDFRHLIITRRSQFELKAAKDRAHILEGLKKA-- 382

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           LD  D I++         I+  ++ G   R  + A   F+   +  +  + L +   +  
Sbjct: 383 LDFIDRIIA---------IIRGSENGDAARKNLIAEFDFSVVQAQAILDLQLRRLANLER 433

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE--------R 789
             I L   A+  +RI Y++ + +    I    +E       S  +   +E         R
Sbjct: 434 QKI-LDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFR 492

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L      I+T+SE+GF KR  +  FR+ +R G GI      + +     V    V+D
Sbjct: 493 VEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREAD----AVRFLSVSD 548

Query: 850 -NDQIILVSDKGTLIRVPVNEIRI-ASRATKG---VVIFSTAKDER-------------- 890
            +D ++  +++G +  +   +I   +SR  KG   V +    +DER              
Sbjct: 549 THDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITAILDLKSFPADH 608

Query: 891 --------------------------------------VVSVERIRESEI 902
                                                 V +VE I E +I
Sbjct: 609 FLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLTASDELVAAVETIEEKDI 658


>gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
 gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
          Length = 857

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/915 (40%), Positives = 545/915 (59%), Gaps = 86/915 (9%)

Query: 1   MTEHIISSDEEE-----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +   + DE       E+ I +V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRR
Sbjct: 4   MKQEHDAKDEAFDPVLIEQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRR 63

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ + + G+  +K Y KCA   G V+G+YHPHG+A++YDA+ R+AQD+S+R  L++G G
Sbjct: 64  ILYTLHENGLTPDKPYRKCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHG 123

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGDPPAA RYTE R+ K +  +L D+ K+TVDF  NYD   QEP VL +R+PN+L
Sbjct: 124 NFGSVDGDPPAAYRYTESRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLL 183

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            NG  GIAVGMATNIP HNLGEV+D    +IDNPD  LD +M+ I+GPDFPTG VI+GR 
Sbjct: 184 CNGSTGIAVGMATNIPPHNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIMGRA 243

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGR  + +R  + IE+ +  RE+IVVTEIPY VNKA ++E IA+LV++KRI  
Sbjct: 244 GIRAAYATGRARLTLRARTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQ 303

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR G R+VIELKR A+A V+LN+LY Y+ LQ    V M+AL G  P+   L 
Sbjct: 304 ISDLRDESDRDGMRIVIELKRDANAQVVLNRLYSYSQLQDTVGVIMLALVGGVPKVMPLK 363

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+ E+V RRTKY L +A++R H+L GL +   N DEV+ IIR S +   ++ 
Sbjct: 364 DVLTHYIDFQGEIVTRRTKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKV 423

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            ++++Q  AI+ ++L +L+GL R  I  
Sbjct: 424 NLIAR--------------------------FGITDIQATAIVAMQLGQLSGLERIRIEE 457

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   +KE   IL   +R++ I+K+EL  ++ +    RRT IV    +++ ED I  
Sbjct: 458 ELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVDIEDLIPV 517

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED V+T++H GY+KR P+  YR QRRGG+G SG+  R+EDFV +LFI STH  ++FF+S 
Sbjct: 518 EDCVITLTHFGYLKRQPVDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFIMFFTSK 577

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  ++ K + +  GS  +RG  ++N+LS++  E++T ++    DE    +  +V  T+ G
Sbjct: 578 GRCFRLKGYEISEGSRTSRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLVMVTRKG 637

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R  L  +  + R G IA+ LD  DE+  V      +++++ TK G  +RF     R 
Sbjct: 638 IIKRTPLGAYKNVRRMGLIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIRFDEQDARP 697

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            + R + GV+ I+L  GD+V+ MA V                                  
Sbjct: 698 LS-RTARGVKAITLEDGDEVVGMARVR--------------------------------- 723

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                             K     +LTVSE G G+RT    +R+ +R GKGIR   V   
Sbjct: 724 ------------------KESGATLLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYV--- 762

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++ G +  V  V+++D +I+++D G +IR+PV EI + SR   GV     +++ RVV++ 
Sbjct: 763 DKNGPVAGVRMVDEDDDVIIITDDGVIIRIPVREITVQSRYGGGVRAMRVSEESRVVTLA 822

Query: 896 RIRESEIVDEAESTE 910
           R  + E   +    E
Sbjct: 823 RAPKEETSGDDGQEE 837



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 107/258 (41%), Gaps = 14/258 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V  L+ +  ++    +  +V V+  G +KR PL  Y+  RR   G   + + D D +  +
Sbjct: 612 VTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRM--GLIAIGLDDGDELAWV 669

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
                 + ++  +  G   +         S  ARG   +  ++L  G+ +  +    ++ 
Sbjct: 670 RQTDGTSELIIATKNGMAIRFDEQDARPLSRTARG---VKAITLEDGDEVVGMARVRKE- 725

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILL 698
              +   ++  ++ G  RR ++S +   +R GK       D    +  V    +++D+++
Sbjct: 726 ---SGATLLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYVDKNGPVAGVRMVDEDDDVII 782

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R P+  I     R   GVR + +++  +V+++A     +   D+     +  
Sbjct: 783 ITDDGVIIRIPVREI-TVQSRYGGGVRAMRVSEESRVVTLARAPKEETSGDDGQ--EESQ 839

Query: 759 SAQRRLISGDTEEITSLK 776
            A     +G+T++    +
Sbjct: 840 IAAGDEAAGETDKTAEDR 857


>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 812

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/890 (42%), Positives = 561/890 (63%), Gaps = 87/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I D +  SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +  Y K A
Sbjct: 3   VIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  LI+GQGNFGS+DGD  AA RYTE RL
Sbjct: 63  RIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEARL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE++D  V +IDN + +L+ +++ I+GPDFPTG +I GR GI  AY +GRGSI IR   H
Sbjct: 183 GELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILEAYKSGRGSIKIRAKHH 242

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   G+RE IV+ E+PYQVNKA ++EKI+ELV++K I  I+++RDESDR+G RVVIELK
Sbjct: 243 IEH-RGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A +++ILN LY++T +Q  F +NM+A+   +P+ F L+ IL  F+ FR+ VV+RRT Y
Sbjct: 302 KDAMSEIILNNLYKHTQMQVSFGINMLAILDKEPKLFNLMEILNTFIKFRKTVVIRRTIY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+  L++R               
Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIER--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ +AIL+++L+RLT L  + ++ E + L  +I     IL   S
Sbjct: 407 -----------FDLSEVQAQAILDMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEES 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK+E L ++ +    R+T IV+   D++ ED I  EDMVVT++H GYVKRVPL  
Sbjct: 456 VLNNVIKEEFLEIRKKYANERKTEIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKT 515

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q RGGKG+  +   + DF+ D +I   H +++  ++ G ++  KV+++P GS  ++G
Sbjct: 516 YERQNRGGKGKKALTTYENDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSKG 575

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+++L++ E+I TI+   + +    N  + F TK+G V+R  LS+F  I  +G  A
Sbjct: 576 KAIVNLINLDKDEKIQTIIKTSDFDE---NKSLAFFTKNGIVKRTNLSEFKNIRSTGVRA 632

Query: 676 MKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           + +D  DE+++ +   +++  + + TK G  +RFP+ A+R    RN+ GV+GI+   +GD
Sbjct: 633 IVIDKDDELVTAKIVKEDDKYLFIVTKKGMAIRFPVDAVREMG-RNARGVKGITFKIEGD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+                                                        L
Sbjct: 692 EVVGAL----------------------------------------------------SL 699

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + ++Q IL+VSEKGFGKRT +  +R++NR GKG+ A  ++  N+ G LV V    +N  +
Sbjct: 700 RDEKQEILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEENHDL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L++ KG +IRV ++ I    + T+GV +     D++VVSV +    +  
Sbjct: 758 MLLTSKGKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAKTPSQKEE 807


>gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A
 gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] -
           Ureaplasma urealyticum
 gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 840

 Score =  734 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/905 (39%), Positives = 516/905 (57%), Gaps = 89/905 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE I    + E   I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   
Sbjct: 13  TEEI--KQQLEGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAF 70

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+  +K Y K AR  G+V+GKYHPHG+ A+Y  + RMAQD+S+R LL++G GNFGS+D
Sbjct: 71  ENGMTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSID 130

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  G
Sbjct: 131 GDSAAAMRYTEARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTG 190

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNL EV     A   N ++ +  +ME ++GPDFPTGA I G +GI   +
Sbjct: 191 IAVGMATNIPPHNLTEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYF 250

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+ IR    IE     R  IVVTEIPY VNKA ++EKI ELV  K+I  I+DLRD
Sbjct: 251 NTGRGSVTIRSKYEIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES R G R+VIE+KR    +V+LN+L++ T LQ+ FSVN +AL    P    +  ++K +
Sbjct: 311 ESSRDGIRIVIEVKRDVIPEVLLNKLFKTTPLQTNFSVNNLALVNGVPMVLNIKEMIKYY 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              + E++VRRT + L KA++R H++ GL IAV N+DEV++II+ S + + A + L+QR 
Sbjct: 371 FEHQIEILVRRTNFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQR- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+E+QT+AILE+RL  LTGL  D ++ E   L 
Sbjct: 430 -------------------------FDLTELQTKAILEMRLRALTGLNIDKLKKEYEDLI 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540
           + IK+  D+L++ +R + II + L  + ++    RRT I+ G+   ++DED I  ED+VV
Sbjct: 465 LVIKDLEDVLNNYNRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVV 524

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY KR+P+  Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+
Sbjct: 525 TMSKRGYFKRLPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYR 584

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P+GS Q++G   IN L + + E I TI+P    +       + F T  G ++R 
Sbjct: 585 LRGHEVPLGSRQSKGIPAINFLPIEKSESILTILPIDNYDQGS----LFFTTSKGIIKRA 640

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  I  +GKIA+ L   D++ SV      +++ +    G  +RF  +  R    R 
Sbjct: 641 NLSDFESIRANGKIAITLKDGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREMG-RI 699

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GI+L   + V+   +  H +                                   
Sbjct: 700 ATGVKGINLENDEYVVGTGLSSHGE----------------------------------- 724

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++L V  KG GK T   D+R++ R  KG+    V+  ++ G 
Sbjct: 725 ------------------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DKTGN 764

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV++  VN  ++ ++++  G +IR+ + +I +  R T GV + S    E V S+   ++ 
Sbjct: 765 LVSIKVVNREEEALIITTSGKVIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKE 824

Query: 901 EIVDE 905
           EI DE
Sbjct: 825 EINDE 829


>gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
 gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
          Length = 866

 Score =  734 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/857 (44%), Positives = 537/857 (62%), Gaps = 28/857 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ALM  I GPDFPTGA+I G  GI  AY TGRG I +R  
Sbjct: 186 NLTEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGRGIAEAYRTGRGKIYLRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +       RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G RVVI
Sbjct: 246 AEVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL++FV+ R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQPKILPLKEILQSFVSHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  L +A+A++D ++ +IR +P    A+  LM+ +W  SD+ +++ 
Sbjct: 366 TMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLK 425

Query: 433 LIDDSSYTIGSDGT----------------MYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                  TIG +                   +L+E Q +AIL+LRL +LTG+  D + +E
Sbjct: 426 RSSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLDE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L I+I E + IL +  RL+ IIK EL ++K++   PRRT I+   L++ +ED I +E
Sbjct: 486 YKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDPRRTNIIVNNLEINNEDLINQE 545

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D+VVT+SH GYVK  PL+ Y AQRRGGKG+S   ++ EDF+  L + +TH ++L FSS G
Sbjct: 546 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHDTILCFSSKG 605

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +Y  KV++LP  S  ARG+ +IN+L L + ERIT I+P  E ++     +V  AT  G 
Sbjct: 606 SLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVREYDA---GHHVFMATACGI 662

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L  F +  + G IA+ L+  DE++ V      N+++L +  G+ VRF  S +R  
Sbjct: 663 VKKTALDCFSRPRKDGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRFSESKVRSV 722

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             R + G+RGI L   D+++S+ I     +     +  Y K   A+     G   +    
Sbjct: 723 G-RKAAGMRGIKLNDDDRLVSLIIPQKEGEILTITKNGYGKRTLAEEYPTKGRATKGVLS 781

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              S   GN+         +    I+ +++ G   RT   +  +  R+ +G+R    +K 
Sbjct: 782 IKTSERNGNV---VAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRLIRTAKN 838

Query: 836 NEIGALVAVFPVNDNDQ 852
                +V +  V + D 
Sbjct: 839 E---HVVGLQRVAEQDD 852



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 17/225 (7%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L  +   R+   G   + + + D +  + +      V+ FS+ G  
Sbjct: 654 VFMATACGIVKKTALDCFSRPRK--DGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKA 711

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNV 657
            +    ++     +A G      + LN  +R+ + I+P  E E       ++  TK+G  
Sbjct: 712 VRFSESKVRSVGRKAAGM---RGIKLNDDDRLVSLIIPQKEGE-------ILTITKNGYG 761

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++    R+ K  + + + +    +++       + I++ T  G  VR  +S I 
Sbjct: 762 KRTLAEEYPTKGRATKGVLSIKTSERNGNVVAAIQVMTSDQIMIITDAGTLVRTRVSEIN 821

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           V  GRN+ GVR I  AK + V+ +  V   D D       +    
Sbjct: 822 V-QGRNTQGVRLIRTAKNEHVVGLQRVAEQDDDIVNEENVVNDQP 865


>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
 gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
          Length = 860

 Score =  734 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 549/900 (61%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ + S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D +                                          
Sbjct: 695 IDTDFVVDADVISSEDQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 713 ----------ILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
 gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
          Length = 840

 Score =  734 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/891 (40%), Positives = 535/891 (60%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +T +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNDRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y  + RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I++  LME I GPDFPT  +I+GR+GI+ AY TGRGSIV
Sbjct: 183 IPTHHLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIMGRSGIRRAYETGRGSIV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +E I++TEIPYQVNKA ++E+IAEL REK+I  I D+ DESDR G R
Sbjct: 243 VRARVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N LY+ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIINNLYKMTALQTTFGINMLALVDNHPKVLNLKQILYHYLEHQKIVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D V+ +IR S   ETA+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R  I  E  +L   I +   
Sbjct: 414 -----------------FQLSDKQAQAILDMRLQRLTGLERSKIEEEYQNLMTLINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   R+L II++EL  +K +    RRT I+   ++++EDED I  E++ +T++  GY+
Sbjct: 457 VLADEERILEIIREELEEIKIKYADKRRTEILTGDIVNIEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   S+H ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L +   E++  ++   E      N ++ F TKHG V+R  +S F +I
Sbjct: 577 YGRTAKGIPLINLLGIESQEQVNAVINVSE---FTENSHLFFTTKHGVVKRTDISQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A+ L   DE++SV+      +I++ TK GQ + FP + IRV   R + GVRGI 
Sbjct: 634 RQSGLRAVDLRENDELISVQITDGNKNIIIATKQGQSIYFPENNIRVMG-RTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M I+                                    D      ++E+
Sbjct: 693 LREDDEVIGMEIL-----------------------------------EDDQKVLIVTEK 717

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +     Q+ L                   NR G G++   +++ N  G LVA+  V+
Sbjct: 718 GYGKQTPAAQYPL------------------RNRGGMGVKTVTITEKN--GNLVAMKTVS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + I+L++  G +IR  +  +    R+  GV +    ++E+V +V ++ +
Sbjct: 758 GEEDIMLMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKVPK 808


>gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51]
 gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51]
          Length = 770

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/759 (47%), Positives = 501/759 (66%), Gaps = 35/759 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--------- 716
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 717 ---------------AGRNSVGVRGISLAKGDQVISMAI 740
                           GR + GVRG+ LA GDQV+S+ +
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIV 761



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 13/168 (7%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +  +A ++H  A  +  +  ++      R    D          + +     +   +EL 
Sbjct: 481 LEEIAALMHILASTERLMEVIREELEAIRAGFSDARR-------TEITAATHDIDMEELI 533

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E  ++T+S +G+ K     D+    R GKG  AT + + + I  L+     N +D I+
Sbjct: 534 AREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVA---NTHDNIL 590

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           L S +G   R+ V ++ +ASR  +G   V +    ++ER+ ++  + E
Sbjct: 591 LFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE 638



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 81/303 (26%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEIL 685
           E          +E       VV  +  G V+   LSD+    R   GK A K+   D I 
Sbjct: 519 EITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIE 578

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +      ++ILL +  G+  R  +  +   A R + G   ++L   ++   +  +L   
Sbjct: 579 RLLVANTHDNILLFSTRGKTYRMKVYQL-PLASRTARGKPIVNLLPLEENERITAILPVT 637

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +++                                               FI   + 
Sbjct: 638 EFSEDK-----------------------------------------------FIFMATG 650

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR- 864
            G  K+TS   F  +N    G+ A ++   +   +L+ V   +   +I+L S  G ++R 
Sbjct: 651 DGTVKKTSLDQF--ANVRANGLIALNLRDED---SLIGVDITDGESEIMLFSKFGKVVRF 705

Query: 865 ------------------------VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                                   +    +R   R   GV     A  ++VVS+  + ++
Sbjct: 706 KESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKT 764

Query: 901 EIV 903
           E+ 
Sbjct: 765 EVT 767


>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
 gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
          Length = 823

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/896 (40%), Positives = 527/896 (58%), Gaps = 93/896 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   +ITDEM+++YL YA++VI+ RA+PD RDGLKPV  RIL+GM  MG+  N+ + KCA
Sbjct: 6   VRPRNITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE++GK HPHG++A+YDAL R+AQ W++R  L+EGQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D    +IDNPD  ++ L  I+ GPDFPT  +ILG  GI NAY+TGRG I IR  +H
Sbjct: 186 NEVCDAITHLIDNPDATIEDLARIMPGPDFPTAGMILGTEGIMNAYSTGRGHITIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA + E+IAEL R+++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F VNM+AL   G +P   TL  +L+ ++  R EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KAR RAH+L GL IA+ NLD V+  IR S + + AR  LM               
Sbjct: 366 EFDLDKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMN-------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AILE++L RL  L R  I  E   +   I E  DIL++
Sbjct: 412 ------------GFALSEAQANAILEMQLGRLAALERQRIEEEYREVIQLIGELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IKQ+L  +K +   PRRTRI+ +   ++ DED I    +++T++  GYVKR  
Sbjct: 460 PRKILHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVRVLITLTDRGYVKRQS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             +YR QRRGG+G  G  +R++D V  +   ST   +LFF+  G VY+ K   LP  S  
Sbjct: 520 PDIYRTQRRGGRGIRGATIREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N+++L  GE++T+++  P+ E +    Y++ AT  G ++R  + ++ Q+  +G
Sbjct: 580 AKGLPLVNLIALEPGEQVTSVLAVPDFEKAE---YLIMATVRGKIKRTSIKEYSQVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+  V       D+LLTT  GQ +RF    +R    R + GV GI+LA+G
Sbjct: 637 LIAIGLEDGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPMG-RPATGVIGIALAEG 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM                                                     +
Sbjct: 696 DRVVSM-----------------------------------------------------D 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +   +L V+  G+GKRT+  ++ +  R+  G+    +   +E   +     V+++  
Sbjct: 703 LARENAALLVVTANGYGKRTALEEYPVKGRATGGVITIRLRPGDE---VAVAHVVHEHSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +  +++ G ++R   + I +  R T+GV I + A ++RV ++      E  DE+E 
Sbjct: 760 LTFITESGMVMRTEADGISMFGRNTQGVTIVNLAPNDRVAALCV----EEPDESEE 811



 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 99/241 (41%), Gaps = 14/241 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       + + ++  +  G +KR  +  Y +Q R   G   + + D D +  + 
Sbjct: 595 EQVTSVLAVPDFEKAEYLIMATVRGKIKRTSIKEY-SQVRS-NGLIAIGLEDGDELGWVA 652

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   H  VL  ++ G   + +   +      A G   +  ++L +G+R+ ++      + 
Sbjct: 653 MTQGHEDVLLTTARGQTIRFRQEEVRPMGRPATG---VIGIALAEGDRVVSM------DL 703

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLT 699
           +  N  ++  T +G  +R  L ++    R+  G I ++L   DE+       + + +   
Sbjct: 704 ARENAALLVVTANGYGKRTALEEYPVKGRATGGVITIRLRPGDEVAVAHVVHEHSLLTFI 763

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T+ G  +R   +      GRN+ GV  ++LA  D+V ++ +    +++       +    
Sbjct: 764 TESGMVMR-TEADGISMFGRNTQGVTIVNLAPNDRVAALCVEEPDESEERSDRVLIDPTR 822

Query: 760 A 760
            
Sbjct: 823 G 823


>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 549/900 (61%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ + S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D +                                          
Sbjct: 695 IDTDFVVDADVISSEDQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 713 ----------ILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1]
          Length = 874

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/901 (40%), Positives = 539/901 (59%), Gaps = 62/901 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             +   + +  I DEMQNS L YA++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K
Sbjct: 3   YNDNSKVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCA   G V+G+YHPHG+A++YDAL R+AQD+S+R  L++G GNFGS+DGD PAA R
Sbjct: 63  AYRKCADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    +L D+ K+TVDF  NYD   +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D    +I++PD  L+ LME I+GPDFPTG +I+G+ GI+ AYATGRG I+
Sbjct: 183 IPPHNLGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIMGKAGIRAAYATGRGKII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +H E+    R  I++ EIP+ + K  +L+ I +LV++KRI  +  +RDESD+ G R
Sbjct: 243 LRSRTHFEEIK-GRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELK+ A  +++LN+L+  T LQ    + M+AL   +P+  TL  +L+ ++ F+ +V+
Sbjct: 302 VVIELKKDAMPEIVLNKLFALTQLQDTVGIIMLALVNGEPKILTLKQMLQHYLDFQVDVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L G  +A   +DEV+ IIR S   + A+  +++R +   D+  
Sbjct: 362 QRRTRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIER-FKDVDMSA 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+D        +  +    LSE Q  AI+++RL +LTGL R  I +EL  L  +I +  D
Sbjct: 421 LLDRAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFED 480

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+  +R+ GII  +L +++ +    RRT I     +++ ED I  ED VVT+++ GY+K
Sbjct: 481 ILADVNRVYGIIIDDLNTIRKKFSDDRRTSIENVSGEVDIEDLIPEEDCVVTLTNNGYIK 540

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL+ Y+ Q RGG+G +G+  R+EDFV ++FI  +H +VLF S+LG +YK K + +P G
Sbjct: 541 RMPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKCYEVPDG 600

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  +RG  LIN++ L++GE+I  ++   +      + Y+   TK G ++R+ LS +  + 
Sbjct: 601 SKASRGFNLINLIPLSEGEKIAAMIKTTD---FSEDKYITIVTKKGKIKRSNLSLYKNVR 657

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ LD  DEI  V        I + T+ G  +R   +  R  + R++ GVR I L
Sbjct: 658 KNGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMS-RSAHGVRAIKL 716

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD V+S+A V                                                
Sbjct: 717 REGDYVVSIARVREG--------------------------------------------- 731

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +LTV+E G+GKRT    +RI NR G G+    V   +  G +  +  V++
Sbjct: 732 --------ATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVD--DVRGHVCGIKIVDE 781

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            D IILVS  G +IR+  ++IR+  R  KGV +    +  +VV+  R  E +   E E  
Sbjct: 782 EDDIILVSSDGIIIRILASDIRVMGRIAKGVRVMRVNEGAQVVAFTR-AEHDDNAETEKV 840

Query: 910 E 910
           E
Sbjct: 841 E 841



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 98/238 (41%), Gaps = 15/238 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M        +  +  V+  G +KR  LS+Y+  R+   G   + + + D +  + 
Sbjct: 619 EKIAAMIKTTDFSEDKYITIVTKKGKIKRSNLSLYKNVRK--NGLIAIGLDEGDEIAGVR 676

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  +   +  G   + +  +    S  A G   +  + L +G+ + +I    E   
Sbjct: 677 MTDGNAQIFVATRNGMAIRIEENKGRSMSRSAHG---VRAIKLREGDYVVSIARVRE--- 730

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILL 698
                 ++  T++G  +R +L  +   NR G         D    +  ++   +E+DI+L
Sbjct: 731 ---GATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCGIKIVDEEDDIIL 787

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            +  G  +R   S IRV   R + GVR + + +G QV++     H D    E++  + 
Sbjct: 788 VSSDGIIIRILASDIRVMG-RIAKGVRVMRVNEGAQVVAFTRAEHDDNAETEKVEQLT 844


>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
 gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
          Length = 823

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/895 (40%), Positives = 525/895 (58%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + +IT+EM+++YL YA++VI+ RA+PD RDGLKPV  RIL+GM  MG+  N+ + KCA
Sbjct: 6   VRTRNITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE++GK HPHG++A+YDAL R+AQ W++R  L+EGQGNFGSVDGDPPAA RYTE RL
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D    +IDNPD  ++ L++I+ GPDFPT  +ILG  GI NAY+TGRG I+IR  +H
Sbjct: 186 SEVCDAITHLIDNPDATVEDLVKILPGPDFPTAGMILGTEGIMNAYSTGRGHIIIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA + E+IAEL R+++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F VNM+AL   G +P   TL  +L+ ++  R EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KAR RAH+L GL IA+ +LD V+  IR S + + AR  LM               
Sbjct: 366 EFDLDKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLMN-------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AILE++L RL  L R  I  E   +   I E  DIL++
Sbjct: 412 ------------GFALSEAQANAILEMQLGRLAALERQRIEEEYREVIRLIGELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IKQ+L  +K +    RRTRI+ E   ++ D+D I    +++T++  GYVKR  
Sbjct: 460 PRKILHLIKQDLADLKAKYGDARRTRIIPEANGEVSDDDLIPDVKVLITLTDRGYVKRQS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VYR QRRGG+G  G   R++D V  +   +T   +LFF+  G VY+ K   LP  S  
Sbjct: 520 PDVYRTQRRGGRGIRGATTREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N+++L  GE++T+++  P+ E +    Y++ AT  G ++R  + ++ Q+  +G
Sbjct: 580 AKGLPLVNLIALEPGEQVTSVLAVPDFEKAE---YLIMATVRGKIKRTSIREYSQVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+  V       D+LLTT  GQ +RF    +R    R + GV GI+LA+G
Sbjct: 637 LIAIGLEEGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPMG-RPATGVIGIALAEG 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +     A                                              
Sbjct: 696 DRVVSMDLAQENAA---------------------------------------------- 709

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L V+  G+GKRT   ++ +  R+  G+    +   +E   +     V +N  
Sbjct: 710 -------LLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDE---VAVAHVVRENSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++ G ++R   + I +  R T+GV I +   ++RV ++      E  + +E
Sbjct: 760 LTIITESGMVMRTEASGISMFGRNTQGVTIVNLTSNDRVAALCVEAPDENEERSE 814



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 98/241 (40%), Gaps = 14/241 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       + + ++  +  G +KR  +  Y +Q R   G   + + + D +  + 
Sbjct: 595 EQVTSVLAVPDFEKAEYLIMATVRGKIKRTSIREY-SQVRS-NGLIAIGLEEGDELGWVA 652

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   H  VL  ++ G   + +   +      A G   +  ++L +G+R+ ++      + 
Sbjct: 653 MTQGHEDVLLTTARGQTIRFRQEEVRPMGRPATG---VIGIALAEGDRVVSM------DL 703

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLT 699
           +  N  ++  T HG  +R  L ++    R+  G I ++L   DE+       + + + + 
Sbjct: 704 AQENAALLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDEVAVAHVVRENSLLTII 763

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T+ G  +R   S      GRN+ GV  ++L   D+V ++ +    + +       +    
Sbjct: 764 TESGMVMRTEAS-GISMFGRNTQGVTIVNLTSNDRVAALCVEAPDENEERSERVLIDPTQ 822

Query: 760 A 760
            
Sbjct: 823 G 823


>gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424]
 gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424]
          Length = 815

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/898 (41%), Positives = 550/898 (61%), Gaps = 85/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   ++G+  +K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG+ A Y  + R+AQD++ R  +++GQGNFGS+DGD  AA R
Sbjct: 62  PYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG VA+ DN +I +  LM  I+GPDFPTGA +LGR+GI  AY TGRGSI+
Sbjct: 182 IPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLLGRSGIVKAYTTGRGSII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+IV+TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L   L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEALYHYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S   E A+  LM++         
Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++VQ +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 413 -----------------FSLTDVQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-EDMVVTVSHLGYV 548
           IL+   R++ I+K+ELL +KD+    RR+ I+EG +D  D + ++  E +++T+SH  Y+
Sbjct: 456 ILAKPERVIEIVKEELLEIKDKYGDKRRSVIIEGQIDQIDNEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED +  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   + +    +  ++F+TK G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQE--EDTSLIFSTKFGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R    R S GV+GI+
Sbjct: 634 LKKGKIALKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQMG-RVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V  +                                            
Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            N+ +++++D+G +IR+ ++ I    R   GV + +   D++V +V    + E  ++ 
Sbjct: 758 GNEDLMIMTDQGIIIRIDISTISTLGRTATGVKVINLVDDQKVATVTLAEKEENYEDD 815


>gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
          Length = 787

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/870 (41%), Positives = 537/870 (61%), Gaps = 85/870 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++   D                                             
Sbjct: 693 EGDTVVGASLITDQD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 708 ------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           + +++++D G +IR  +  I    RAT GV
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGV 787



 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/536 (14%), Positives = 176/536 (32%), Gaps = 69/536 (12%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT+    K      V+      V        I+R            ++   N   ++ 
Sbjct: 241 RSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRF 300

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +I++  D+S  +  +    ++++QT     + LA   G     I +    L   I+   +
Sbjct: 301 VIEVKRDASANVILNNLFKMTQMQTNFGFNM-LAIQNG--IPKILSLRQILDAYIEHQKE 357

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ++  R+R      +    + + L        ++ ++ +        E     +S     +
Sbjct: 358 VVVRRTRFDKEKAEARAHILEGLLIA--LDHIDEVIRIIRASETDAEAQAELMSKFKLSE 415

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R   ++   + R   G     ++ E       I          +    V +     L   
Sbjct: 416 RQSQAILDMRLRRLTGLERDKIQSEYDDLLALIA---DLADILAKPERVSQIIKDELDEV 472

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +   K    ++       I  ++   +++    +  ++  +  G ++R    +F    
Sbjct: 473 KRKFSDKRRTELM-------IGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQK 525

Query: 670 R--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           R   G     +   D +  + + +  + +L  T  G+  R     I  +  R + G+  +
Sbjct: 526 RGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG-RTAKGLPVV 584

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D+  S+  V++ ++D                                        
Sbjct: 585 NLLKLDEDESIQTVINVESD---------------------------------------- 604

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                 +  + ++   +  G  KRTS  +F    ++G  ++A ++   +E   L+ V   
Sbjct: 605 ------RSDDAYLFFTTRHGIVKRTSVKEFANIRQNG--LKALNLKDEDE---LINVLLA 653

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             +  II+ +  G  +R   + +R  SR   GV   +  + + VV    I + + V
Sbjct: 654 EGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLITDQDEV 709



 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 106/265 (40%), Gaps = 30/265 (11%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           VRR +        R+  +    + LD  DE++ +   ++ +       + +         
Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFK------- 412

Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              + R S  +  + L      + D++ S        A   +    +       ++I  +
Sbjct: 413 --LSERQSQAILDMRLRRLTGLERDKIQSEY--DDLLALIADLADILAKPERVSQIIKDE 468

Query: 769 TEEITSLKND----SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +E+    +D      + G +     ++L  +   ++T+S +G+ KR    +F    R G
Sbjct: 469 LDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGG 528

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VV 881
           +G++ T V   + +  LV+    + +D ++  ++KG + R+   EI    R  KG   V 
Sbjct: 529 RGVQGTGVKDDDFVRELVST---STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVN 585

Query: 882 IFSTAKDERVVSVERIRESEIVDEA 906
           +    +DE + +V    ES+  D+A
Sbjct: 586 LLKLDEDESIQTV-INVESDRSDDA 609


>gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101]
 gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/897 (38%), Positives = 538/897 (59%), Gaps = 76/897 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV     
Sbjct: 2   SEGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  R P +LVNG  GIAVGMATN+
Sbjct: 122 TEARMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A +DN DI++D LM  I+ PDFPTG +I G  G++ A+ TGRG IV+
Sbjct: 182 PPHNLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+    RE I+VTEIPYQVNKA M+++ A+LV EK+I  IA++RDESDR G R+
Sbjct: 242 RAKVGFEEV-EGRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LKR A+ +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  F+  R +VVV
Sbjct: 301 VYILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQLLNLKDMIHYFIEHRHDVVV 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R          
Sbjct: 361 RRTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q RAI+E+RL +LTGL +D +R E + L   I+    +
Sbjct: 411 ----------------FKLSDIQARAIVEMRLRQLTGLEQDKLRAEYDELMKLIEHLKAL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  +  + +IK+EL  ++D+    RR++I     D+  ED I  E++V+T+SH GY+KR
Sbjct: 455 LADVNLRIDLIKEELTEIRDKYGDDRRSQIEYSGGDVSIEDLIADENVVITISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y+ Q RGG G+     RD+DF+  +F+ + H  ++FF+  G  +  +V+ +P GS
Sbjct: 515 TNLSEYKTQNRGGVGQKSAGTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGS 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N++++   +++   +   +  D+   N   +V  TK G V++  L  + + 
Sbjct: 575 KTAKGRAIQNLINIESDDKVKAFICTQDLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ +   DE+L  +    E+ I+L  K G+ VRF  +  R    R + GVRGI+
Sbjct: 635 RANGVAAITIKEGDELLEAKLTDGESQIILAVKSGKLVRFEETKTRPMG-RTASGVRGIT 693

Query: 729 LAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L    D+VI M  V   D    + +   ++   +R  +  D  E                
Sbjct: 694 LKDDTDEVIGMVTVGKNDVADSQILVVTENGYGKRTKLVDDDGEDV-------------- 739

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                        +RI+NR GKG++  +++  ++ G L+++  V
Sbjct: 740 -----------------------------YRITNRGGKGVKTLNIT--DKTGKLISINAV 768

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            D+D +++++  G  IR+ + ++R+  RAT+GV + +    + + +V ++ + +  +
Sbjct: 769 TDSDDLMIINKSGLTIRMAIEDLRVMGRATQGVRLINLKGKDSIAAVTKVMKDDAEE 825


>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 549/900 (61%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ + S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D +                                          
Sbjct: 695 IDTDFVVDADVISSEDQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 713 ----------ILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
 gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/897 (40%), Positives = 547/897 (60%), Gaps = 59/897 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +     +K Y K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA   GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDGDPPAA RYTE 
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GIAVGMATNIP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG 
Sbjct: 193 NLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGK 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I    G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDESD+ G R+V E
Sbjct: 253 AEI-VEEGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVYE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++AF+++++ RRT
Sbjct: 312 LKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R       K L   
Sbjct: 372 AFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQRA 431

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + ++   +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  +I + LDILSS
Sbjct: 432 MGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSS 491

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+  IIK+E+ ++K++    RRT I     +++ ED I  E+ V+T +++GY+KR P+
Sbjct: 492 DERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECVLTYTNIGYIKRQPV 551

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
            VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q+
Sbjct: 552 DVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQS 611

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L DF  + ++G 
Sbjct: 612 RGTNIVNLLQLDEGERIAAMMKTSDFAE---NKYFICVTKYGKIKRTPLYDFRNVRKNGL 668

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DEI +      ++ I++ T LG  + F    IR    R + GVR I L + D
Sbjct: 669 RAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMG-RLAAGVRAIKLREDD 727

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++  A V   D                                                
Sbjct: 728 YIVGAAKVYSDD------------------------------------------------ 739

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILTV++KG+G+ ++  D+R+ NR G G++   +   ++ G +  +  +  +D +
Sbjct: 740 ----MRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVCGIRSIQADDDV 793

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E  D  E  +
Sbjct: 794 ILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETADIEEVEQ 850


>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
 gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
          Length = 866

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/919 (38%), Positives = 541/919 (58%), Gaps = 69/919 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MADPTGPG--ESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSV
Sbjct: 59  YELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP V+ AR P++L+NG 
Sbjct: 119 DNDPPAAMRYTESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGS 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL E+++G +A+I +P++D  AL+ +I GPDFPTG  ILGR GI+ 
Sbjct: 179 SGIAVGMATNIPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQILGRRGIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y TGRGS+ +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  
Sbjct: 239 TYTTGRGSVTMRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDG 298

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDESDR G R+VIEL+R A   V+LN L++ T LQS FS +M+AL   +P   TL 
Sbjct: 299 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSEPVLLTLR 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR E + RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  TAR 
Sbjct: 359 RMLQVFLEFRIETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARL 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L +R                            LSE+Q+ AIL+++L RLT L  D IR 
Sbjct: 419 QLQER--------------------------HGLSEIQSDAILQMQLRRLTALEADKIRL 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL  R R+LG+I+ EL+ +++   + RRT I++    +ED D I  
Sbjct: 453 EHEDLVTKIADYKDILGRRERVLGLIEAELIQLRERYPSERRTEILDLEGGLEDIDLIAN 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  
Sbjct: 513 ERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY    +R+P+GS  A+G  ++ +L + + E+IT+++      +  +++ ++  T  G
Sbjct: 573 GVVYAVPAYRVPVGSRGAKGTPVVQLLPIPREEQITSLVAVS---AFDDDVQLLMLTSGG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R +LS F  I  +G IA+ L+  D +         + +L+ +  G  + F ++   +
Sbjct: 630 YIKRTRLSAFANIRSNGLIAISLEDGDALRWARLALPGDSVLIGSLKGMTIHFRLTDGEL 689

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVR ++L  GD+++SM ++    AD        ++           ++    
Sbjct: 690 RPLGRTARGVRAMALRPGDELVSMDVLPAELADQVASSSASENEEEDAPEAGESSD---- 745

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  S  G GKR     FR+  R+G G+RA    +
Sbjct: 746 ----------------------GPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKFRR 783

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++  LV +  +   ++++LVS++G ++R+  + I   SRA  GV +      +R+  V
Sbjct: 784 DGDV--LVGLTVMGPGEELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLSEV 841

Query: 895 ERIR----ESEIVDEAEST 909
             +     E ++ D AE++
Sbjct: 842 VLVPPAPDEEDLADTAETS 860


>gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
 gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
          Length = 885

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/857 (42%), Positives = 522/857 (60%), Gaps = 30/857 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAREISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL KDTVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMSKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+ C+A+I +  I +D LM  + GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLREVVNACLALIGDAHISIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I      R+ I+V EIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARAEVITDEKTGRDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL++G   DV+LN LY  TSLQ++F +NMVAL   +P    L  IL+AF+  R EVV
Sbjct: 303 VVIELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +LL KAR+R HVL GLAIA+AN+D+V+ +++ SP+P  AR  L+   W   ++  
Sbjct: 363 TRRTLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTS 422

Query: 430 LIDLIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +         Y        LS  Q +AIL+LRL RLTGL  + +  E     
Sbjct: 423 MLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI + LDIL  R RLL +I++EL  +  E    RRT I +   D+  ED I  ED VVT
Sbjct: 483 AEIADLLDILQDRERLLAVIREELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y+ QRRGG G++ + ++DEDFV  L I +TH ++L F++LG VY  
Sbjct: 543 LSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWI 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+    +RG+ ++N+L L++GER+T+I+P    E   ++ ++  AT  G V++  
Sbjct: 603 KVYQIPVAGRSSRGRPMVNLLQLDEGERVTSILPL---EEHSDDRFIFMATAQGYVKKTD 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F     +G  A+ L   D ++         D++L +  G+  RF  SA+R    R S
Sbjct: 660 LASFA-PRSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAMG-RAS 717

Query: 722 VGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GVRGI+LA G ++IS+ +      VL    +   +   +     + R   G     +S 
Sbjct: 718 RGVRGINLADGHRMISLLVPDARGTVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSE 777

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +N   V                  ++ +S +G   RT         R+ +G+R     + 
Sbjct: 778 RNGRLVGAL--------QVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEG 829

Query: 836 NEIGALVAVFPVNDNDQ 852
             +  +     V+  ++
Sbjct: 830 ETLVRV--ERIVDSGEE 844



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 71/461 (15%), Positives = 166/461 (36%), Gaps = 28/461 (6%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              L+  +  R +              +     + LL + +D+   +  L   + + + +
Sbjct: 440 FYGLHDGEY-RLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLAEIADLLDILQDRERL 498

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR     E A     +R     D ++ +   D  +         +    +T+ + E 
Sbjct: 499 LAVIR-EELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSHGGYAKTQPLAEY 557

Query: 461 RLARLTGLGRDDIRNELNSLGIE--IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           ++ R  G+G+  +  +         I    D L   + L  +   ++  +     + R  
Sbjct: 558 QVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWIKVYQIPVAGRSSRGR 617

Query: 519 RIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
            +V        E +  +   +    +  +   +  GYVK+  L+ +  +  G +    +V
Sbjct: 618 PMVNLLQLDEGERVTSILPLEEHSDDRFIFMATAQGYVKKTDLASFAPRSAGLR---AIV 674

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           + ++D +    I   +  V+ FSS G   +     +      +RG   +  ++L  G R+
Sbjct: 675 LGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAMGRASRG---VRGINLADGHRM 731

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSV 687
            +++             V+  +++G  +R  + DF    R GK  IAM        ++  
Sbjct: 732 ISLLV------PDARGTVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSERNGRLVGA 785

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                 ++++L +  G  VR     +     RN+ GVR I   +G+ ++ +  ++ +  +
Sbjct: 786 LQVFSGDELMLISNQGTLVRTQCDQVSQLG-RNTQGVRIIRTKEGETLVRVERIVDSGEE 844

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            D+        +A     S D    +   + S       ++
Sbjct: 845 GDKVAAAADDSAAVSVSTSVDEYPASDNNDASESPVESGDD 885


>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
 gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
          Length = 860

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 548/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T   +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ + S +   +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    E   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D +                                          
Sbjct: 695 IDTDFVVDADVISSEDQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 713 ----------ILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740]
 gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes]
          Length = 828

 Score =  732 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/901 (41%), Positives = 544/901 (60%), Gaps = 86/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
              + I  V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV     
Sbjct: 6   SNNEDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGVGARAA 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +A+  +L D+ K+TVDF  NYD + +EP VL +R PN+LVNG  GIAVGMATNI
Sbjct: 126 TEARMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L EVV+  + +ID+P  +L+ LM  + GPDFPTG +I G+ GI  AY TGRG I +
Sbjct: 186 PPHRLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIYGKQGIIEAYRTGRGRIRV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK    ++ IV+ E+PYQ NKA ++E+IAEL +EK I  IA++RDESDR+G RV
Sbjct: 246 RAKTHIEKNKT-KDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A ++++LN L++ T++++ F + ++A++  +P+ FTL+ +L  F+  R+ VV+
Sbjct: 305 VIELKKDAMSEIVLNHLFKSTAMETTFGIILLAIHNKEPKIFTLLELLNLFLNHRKTVVI 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L GL IA+ ++DE+V +IR S + + A+  LM R          
Sbjct: 365 RRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMAR---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AIL++RL RLTGL R+ I NE   L  EI+    I
Sbjct: 415 ----------------FGLSEIQSQAILDMRLQRLTGLEREKIENEYQELLKEIERLTAI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  +L  IIKQEL+ ++++  T R+T I E    ++ ED I  E  VVT+SH GYVKR
Sbjct: 459 LRSEEKLNEIIKQELIEIREKFSTKRKTTIEEDYESIDIEDLIPNEPTVVTMSHRGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPL  Y  Q RGGKG+      D+DF+   F+ +TH ++LF +  G +Y  KV+R+P   
Sbjct: 519 VPLRSYEKQNRGGKGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAG 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A GKA++N++ +   E+I   +   +      +  ++F TK+G V+R+ LS+F  I  
Sbjct: 579 RTAIGKAVVNLIQIGADEKIMATITTQDFNE---DKSLMFFTKNGIVKRSNLSEFKNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE+++         +I + T  G C+RFP+  IR    R + GV GI  
Sbjct: 636 VGIRAINLDDNDELVTARIIDSNVKEIFVATYKGMCIRFPVEDIREIG-RVARGVTGIRF 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +  ++ A  +  + +                                          
Sbjct: 695 KEDEDYVAGATTIGDEKE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +LTVSEKG GKRT + ++R+ +R GKG+ A  ++   + G LV V  V++
Sbjct: 713 ---------ELLTVSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTP--KTGQLVGVVNVDE 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +  ++L++  G +IRV +  IR A R T GV+I + + D++VVS+ R  + E  +E  S 
Sbjct: 762 SMDLMLLTSTGKMIRVDMQTIRKAGRNTSGVIIVNVS-DDKVVSIARCPKEENPEEEASD 820

Query: 910 E 910
           E
Sbjct: 821 E 821


>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
 gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
          Length = 876

 Score =  732 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 530/902 (58%), Gaps = 66/902 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 18  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE R
Sbjct: 78  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137

Query: 135 LQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L+      LL+D+  +TVD+  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H
Sbjct: 138 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++ G +A+I+NP++    LM +I GPDFPTG  ILGRTGIK  Y +GRGS+ +RGV
Sbjct: 198 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 257

Query: 254 SHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + IE        DR+ +++T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR G R
Sbjct: 258 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 317

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR E +
Sbjct: 318 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 377

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L +R         
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQER--------- 428

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSEVQ  AIL+++L RLT L  D IR E   L  +I +  D
Sbjct: 429 -----------------HGLSEVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKD 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL  R R+ GII+ EL  ++D    PRRT I++    ++D D I  E  VV ++  GY+K
Sbjct: 472 ILGRRERVFGIIQDELAQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  
Sbjct: 532 RMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQC 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  ++ +L + + E IT+++   E     ++  ++  T+ G ++R +LS F  I 
Sbjct: 592 SRTAKGTPVVQLLPIPREEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
            +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +   GR + GVR ++
Sbjct: 649 SNGLIAIGLEEGDALTWVRLAVSGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSMN 708

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++SM ++    AD               R+     ++    +  ++ +G     
Sbjct: 709 LRDGDALVSMDVLPVELAD---------------RVAQSGDDDSDDDEAGAASDG----- 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA       +  ALV +  + 
Sbjct: 749 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTDADALVGLRVLG 797

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +      D+A  
Sbjct: 798 AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVPPEAESDDATE 857

Query: 909 TE 910
            E
Sbjct: 858 GE 859



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 112/278 (40%), Gaps = 33/278 (11%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R  ++  LL + + +    +  ++ ++  G++KR  LS +   R    G   + + + D 
Sbjct: 608 REEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIRS--NGLIAIGLEEGDA 662

Query: 577 VTDLFIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           +T + +  +  SVL  S  G    ++     L      ARG   +  ++L  G+ + ++ 
Sbjct: 663 LTWVRLAVSGDSVLIGSRAGMTIHFRLSDDELRPLGRTARG---VRSMNLRDGDALVSMD 719

Query: 635 PFP------------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KI 674
             P                  E  ++ +  +V+ A+  G  +R  ++ F    R+G    
Sbjct: 720 VLPVELADRVAQSGDDDSDDDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLR 779

Query: 675 AMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMK     D ++ +       ++LL ++ G  VR           R + GVR   L KGD
Sbjct: 780 AMKFRTDADALVGLRVLGAGEEVLLVSEKGVIVRTSA-DAIPQQSRAATGVRLQRLDKGD 838

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           ++ S  +++  +A+ D+              +S + ++
Sbjct: 839 RL-SEVVMVPPEAESDDATEGEGEEVTAETAVSAEPQD 875


>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
          Length = 808

 Score =  732 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/890 (39%), Positives = 517/890 (58%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  V +  EM++SYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+  N+ Y
Sbjct: 3   EKNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R  LI+G GNFGS+DGD PAA RYT
Sbjct: 63  RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  L+ D+ KD VDF PNYD S +EPVVL  + P +L+NG  GIAVGMATNIP
Sbjct: 123 EVRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +I+ P+ +++ L+  I+GPDFPTG  I+G  GI+ +Y TG+G +++R
Sbjct: 183 PHNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTKGIRESYLTGKGKLIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+T    + I++ EIPY VNK+ +L +IAELV+E++I  I DLRDESDR G RVV
Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+     +++NQLY++T LQ+ F V M+A+   +P+ F L  +L  F+  R+ VV R
Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQPKVFNLKELLNIFLEHRKNVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KAR RAH+L GL IA+ +LDEV+ IIR S N E AR +LM +           
Sbjct: 363 RTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+++Q +AIL++RL +LT L ++ +  E+N +   I +   IL
Sbjct: 412 ---------------FKLTQIQAQAILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
                L  +I +EL  +K +    R+T I E    D+  ED +     VV ++   Y+KR
Sbjct: 457 KDEKELWRVISEELKEIKRKYADERKTLIEEEEKSDITIEDILPDNPEVVCITQDSYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS Y+ QRRGGKG + +   ++D +T   + ST +++  FS+ G VY  K + L   S
Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G  +   L+++  E+IT I+   E      NLY  F T  G V++  + +F  + +
Sbjct: 577 RQSKGVPIKEYLNIDNDEKITEIISVNE---FPKNLYFFFVTSKGIVKKTSIEEFENVRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+KL   D +++V   +  ++I++ TK G  +RF    +R    R + GV GI L 
Sbjct: 634 SGIYAIKLGEEDYLVNVFLTSGNDEIMIFTKKGNAIRFHEKDVREMG-RIAQGVIGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI                                                      
Sbjct: 693 KDDSVIGG---------------------------------------------------- 700

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             +  + + I+ V+  G GKR +  +F +  R G G+RA  ++   + G LV V  V++N
Sbjct: 701 -VIFKESKQIVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITP--KTGDLVGVKNVSEN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++ + +G +IR+PVN I I SR ++GV +    +D+ VVS++ +   
Sbjct: 758 DEILISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSIDLVENE 807


>gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 815

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/898 (39%), Positives = 549/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D+S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDNSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E                  KG+GKRT + ++ I +R   G++ T+V++ N  G LV V  
Sbjct: 717 E------------------KGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
 gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
          Length = 836

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/847 (42%), Positives = 529/847 (62%), Gaps = 35/847 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DKPNSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TG+GSI+
Sbjct: 183 IPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  ++ I+V E+PYQVNKA ++EKIAEL R+K+I  I DLRDESDR G R
Sbjct: 243 VRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN LY+ TSLQ+ F +N +AL   +P+   L   L+ ++  +  V+
Sbjct: 303 IVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ NLD V+ +IR S   + AR  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ VK+  +  RRT IV G  + +EDED I R+D+V++++H GY+
Sbjct: 457 ILADEEKVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +++GE +  I+   E     ++ Y+ F TK G  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVDKGEWVNAIIRVDE---FVDDWYLFFTTKQGISKRTPLSSFENI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IA+ L   DE++SV+    + D+++ TK G  +RF  + +R    R + GV+GI+
Sbjct: 634 RNSGLIALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSMG-RTATGVKGIT 692

Query: 729 LAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+VI M I+   +D     +  Y K    +   +     +     N +   G++  
Sbjct: 693 LDSEDEVIGMEILEEQSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +C     +E+ I+ ++  G   R S  D     R+ +G++   +     +  +  V   
Sbjct: 753 LKCV---SQEEDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809

Query: 848 NDNDQII 854
            D D+++
Sbjct: 810 EDEDEVL 816



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 99/241 (41%), Gaps = 15/241 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   D  V +  +   +  G  KR PLS +   R    G   + +R+ED +  + 
Sbjct: 596 EWVNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNS--GLIALNLREEDELISVK 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +  G + +     +      A G   +  ++L+  + +  +    E   
Sbjct: 654 LTDGKRDMVIGTKKGMLIRFNENDVRSMGRTATG---VKGITLDSEDEVIGMEILEEQSD 710

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
                 V+  TK+G  +R  + ++    R GK        D   ++++++  +QE DI+L
Sbjct: 711 ------VLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVALKCVSQEEDIML 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +S I     RN+ GV+ I L   + V ++A V  ++ + +      +H 
Sbjct: 765 ITVSGVLIRVSVSDISQMG-RNTQGVKVIRLGDEEFVSTVAKVQTSEDEDEVLDELDEHE 823

Query: 759 S 759
            
Sbjct: 824 E 824


>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 829

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/888 (42%), Positives = 543/888 (61%), Gaps = 88/888 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY 
Sbjct: 6   NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  V +IDNP  +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R 
Sbjct: 186 HRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  I+++RDESDR+G RVVI
Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+ +            
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL R+ I NE   L  EI+    IL 
Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILR 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 459 SEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  
Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +      +  + F TK+G ++R  LS+F  I   G
Sbjct: 579 AIGKAVVNLINLAPDEKIMATITTKDFNE---DKSIAFFTKNGIIKRTNLSEFKNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +  +     IL+ T  G CVRF +  +R    R + GV  I    
Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREIG-RVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V +                                               
Sbjct: 695 PKDYVIGATVVSNE---------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 709 ------NEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCP 807


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/829 (43%), Positives = 524/829 (63%), Gaps = 35/829 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +T ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPSSRVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDG  +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +A+   PDI +  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  S  +E I+V EIPYQVNKA ++EKIAELVR+K++  I DLRDESDR G R
Sbjct: 243 LRAKVDIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY+ T+LQ+ F +NM+AL   +P+   L   LK ++  ++ V+
Sbjct: 303 IVIEVRKDANASVILNNLYKLTALQTSFGINMLALVDGQPKVLNLKQCLKYYLDHQQVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA+ RAH+L GL IA+ +LDEV+ +IR S   E AR  LM +         
Sbjct: 363 RRRTEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I +E  SL   I E   
Sbjct: 414 -----------------FELSDKQAQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV G ++ +EDED I RE++V+T++H GYV
Sbjct: 457 ILADEEKVLEIIREELTEIKERFNDERRTEIVSGGIEQIEDEDLIPRENIVITLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YRAQ+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +N+ E +  ++P    E   +  ++ F TK G  +R+ L+ F  I
Sbjct: 577 FSRTAKGIPIINLLGINKDEWVNAVIPV---EEFVDEWFLFFTTKEGISKRSPLTSFGNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV       +I++ TK GQ +RFP + +R    R + GV+GI+
Sbjct: 634 RNNGLIALNLREGDELISVRLTDGSKEIIIGTKNGQLIRFPETDVRSMG-RTATGVKGIT 692

Query: 729 LAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+V+ M ++   ++     +  Y K        + G   +     N +   G I  
Sbjct: 693 LDSDDEVVGMEVLEENSEILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTI-- 750

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
               ++   E+ I+ ++  G   R +  D     R+ +G+R   ++   
Sbjct: 751 -VAVKVVTGEEDIMLITTGGVLIRMAVGDISTMGRNTQGVRLIRINDSE 798



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 17/219 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   +  V E  +   +  G  KR PL+ +   R    G   + +R+ D +  + 
Sbjct: 596 EWVNAVIPVEEFVDEWFLFFTTKEGISKRSPLTSFGNIR--NNGLIALNLREGDELISVR 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +  G + +     +      A G   +  ++L+  + +  +    E+  
Sbjct: 654 LTDGSKEIIIGTKNGQLIRFPETDVRSMGRTATG---VKGITLDSDDEVVGMEVLEENSE 710

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++  TK G  +R    ++    R GK     +  D+   I++V+  T E DI+L
Sbjct: 711 ------ILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVAVKVVTGEEDIML 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISL--AKGDQV 735
            T  G  +R  +  I     RN+ GVR I +  ++G+ V
Sbjct: 765 ITTGGVLIRMAVGDISTMG-RNTQGVRLIRINDSEGEYV 802


>gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894]
 gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 856

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/938 (38%), Positives = 522/938 (55%), Gaps = 114/938 (12%)

Query: 1   MTEHIISS----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+ I        E     +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+
Sbjct: 1   MTDEIPGGIPELPEVHHGHVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           ++ M   G   ++ + KCAR+ G+VMGKYHPHG++AIYDA+ R+ QDWSLR  L+ GQGN
Sbjct: 61  IYAMYDGGYRPDRGFSKCARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTECR+   A  ++ D+ KDTVDF+ NYDG  QEPVVL AR+PN+LV
Sbjct: 121 FGSPGNDPAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLV 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV +G    + +P+   +     LM+ ++GPDFPTGA IL
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           G  GI+ AY TGRGSI +R V ++E+    R  +VVTE+PYQVN   +  KIA+LV + R
Sbjct: 241 GTKGIEEAYRTGRGSITMRAVVNVEEIQN-RICLVVTELPYQVNPDNLAAKIADLVNDGR 299

Query: 293 IVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE+  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P  
Sbjct: 300 LQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +   + EV+ RRT YLL  A  R H+L G   A+  LD+V+ +IR SP+ +
Sbjct: 360 LSLDAFIRHWTTHQMEVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDAD 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM+                           + + E+Q  AIL L+L RL  L R 
Sbjct: 420 QARAGLME--------------------------LLEIDEIQANAILNLQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E  ++  EI +  DIL+   R   I+ +EL  + ++    RRT I+    DM  ED
Sbjct: 454 RIIDEHAAIEAEITDLQDILAKPERQRSIVGEELDGIVEKYGDERRTHILPYDGDMSMED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  E++VVT++  GY KR     YR Q+RGGKG  G  +R++D V   F+ +TH  +LF
Sbjct: 514 LIPEEEVVVTITRGGYAKRTRSDAYRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP GS  ++G+ + N+L+   GE I  ++   + +++    Y+V A
Sbjct: 574 FTNFGRVYRAKGYELPEGSRDSKGQHVANMLAFQPGEHIAQVLDLRDYDAAE---YLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCV 706
           T+ G V++ +L ++     +G IA+ L        DE++         D++L ++ GQ +
Sbjct: 631 TRRGLVKKTRLQEYNSPRSAGLIAINLREDEDGQPDELIGAMLVDSSQDLILVSRKGQSI 690

Query: 707 RFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RFP +   +   GR + GV G+   +GD+V++ A+V                        
Sbjct: 691 RFPAADESLRPLGRATSGVTGMKFREGDEVLTAAVVRE---------------------- 728

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT--SSYDFRISNRS 823
                                          + F+ TV+E G  KRT  S  ++R   R 
Sbjct: 729 -------------------------------DAFLFTVTESGLAKRTELSVDNYRQQGRG 757

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G GIR  ++ +  E G LV    V+D+D+++++ ++G ++R  V E+R   R T+GV   
Sbjct: 758 GLGIRVANLPE--ERGDLVGALVVDDDDEVLVIMERGKIVRSAVAEVRATGRTTQGVTFA 815

Query: 884 STAKDERVVSVER------------IRESEIVDEAEST 909
              K +R+++V R            + ES  VDEA+  
Sbjct: 816 KPDKGDRIIAVARNVERREEEESASVDESVPVDEADDD 853


>gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/897 (40%), Positives = 547/897 (60%), Gaps = 59/897 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +     +K Y K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA   GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDGDPPAA RYTE 
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GIAVGMATNIP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGK 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I    G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDESD+ G R+V E
Sbjct: 253 AEI-VEEGNHSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVYE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++AF+++++ RRT
Sbjct: 312 LKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R       K L   
Sbjct: 372 AFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQRA 431

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + ++   +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  +I + LDILSS
Sbjct: 432 MGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSS 491

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+  IIK+E+ ++K++    RRT I     +++ ED I  E+ V+T +++GY+KR P+
Sbjct: 492 DERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECVLTYTNIGYIKRQPV 551

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
            VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q+
Sbjct: 552 DVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQS 611

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L DF  + ++G 
Sbjct: 612 RGTNIVNLLQLDEGERIAAMMKTSDFAE---NKYFICVTKYGKIKRTPLYDFRNVRKNGL 668

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DEI +      ++ I++ T LG  + F    IR    R + GVR I L + D
Sbjct: 669 RAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMG-RLAAGVRAIKLREDD 727

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++  A V   D                                                
Sbjct: 728 YIVGAAKVYSDD------------------------------------------------ 739

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILTV++KG+G+ ++  D+R+ NR G G++   +   ++ G +  +  +  +D +
Sbjct: 740 ----MRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVCGIRSIQADDDV 793

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E  D  E  +
Sbjct: 794 ILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETADIEEVEQ 850


>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 867

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/914 (37%), Positives = 528/914 (57%), Gaps = 65/914 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S +    E    I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDIVDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE++DG  A+I NP  +   L E+I+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  + +G+GSI +RGV+ IE+       +++ +++TE+P+Q NKAA++E+IA+LV EKR
Sbjct: 241 IKETFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LDGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +D ++ +IR + +  +
Sbjct: 361 SLRKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS +Q  AIL+++L RLT L  D 
Sbjct: 421 AREQL--------------------------QNDHELSVIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I++E + L  +I +  +IL+ + R+  II +EL  + +   +PR+T I+     ++D D 
Sbjct: 455 IKSEHDELTKKITDYKNILNDKERINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + +  RG +G++G   + +D V      + H ++L F
Sbjct: 515 IANERSVVLLTTAGYLKRMPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +S  N  Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSLVSV---DSFDNECYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  LS F ++  +G IA+ L+  D +  V   T+ + +L+ +  G  + F +  
Sbjct: 632 KAGFIKRTPLSAFSKVRSNGLIAINLEEGDALTWVRLSTEGDSVLIGSSRGMTIHFRLDT 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GV+ ++L +GD+++SM ++     D    +      +     +      
Sbjct: 692 NELRPLGRTARGVKSMNLKEGDKLVSMDVLSCDLVDQLANLEEEDIENENEEDLESK--- 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                      +IL  S  G GKR     FR+  R+G G+RA  
Sbjct: 749 ----------------------SSNGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRAIK 786

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +  +LV +  + + ++++LV+++G ++R   ++I   SRA  GV +      + +
Sbjct: 787 F--RIKDDSLVGLKVLGEGEELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDHL 844

Query: 892 VSVERIRESEIVDE 905
             V  +   +I ++
Sbjct: 845 SEVVLVPHEQIEED 858


>gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 853

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/904 (38%), Positives = 544/904 (60%), Gaps = 69/904 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +  V I ++M+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM ++G   +K Y
Sbjct: 3   EQGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY  L R+AQ W++R  L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF+PN+D + +EPVVL AR PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D  VA I NP I ++ LM  I+ PDFPTG +I G  G++ A+ TGRG I+IR
Sbjct: 183 PHNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIYGYAGVREAFETGRGRIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE ++   ++IVVTEIPY VN+A +++ IA L  EK++  IA++ DESDRQG R+V
Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR  +A+VILN+LY+Y+ LQS FSVN VAL   +P    LI ++  FV  R EVV R
Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVKGRPRTLNLIDLISNFVEHRHEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA +RA +L GL I + NLDE ++IIR S  P  A+  L+ R           
Sbjct: 363 RTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q   ++ELRL +LT + +D +R E   L   I++  DIL
Sbjct: 412 ---------------FSLTERQAAYVVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + II+ EL+ +  +    RRT IV    DM  ED    + M++T+SH GY+KR 
Sbjct: 457 AKVERRMKIIEDELMELGSKFGDKRRTEIVYATEDMNPEDFYADDQMIITISHQGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ ++AQ RGG G  G   +DEDF+  ++  + H  +LFF+  G  Y  KV+ +P GS 
Sbjct: 517 ALAEFKAQNRGGVGSKGGATKDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSK 576

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   ++I   +      D    +  Y+VF T++G +++  L  + +  
Sbjct: 577 TSKGRAVQNMLNIEADDKINAFIRVKNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V      ++I++  + G+ +RF  S +R    R + GV  +++
Sbjct: 637 QNGVNAITIRENDQVIQVRLTDGNSEIVIANRQGRAIRFHESKVREMG-RTATGVNAMAI 695

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            K  GD+V+ M  V    AD  E +  +      +R    + +E  ++K D + E     
Sbjct: 696 DKANGDEVVGMVAV----ADKTETVLVVSEKGYGKRSQLDELDENGNIKLDENGE----- 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                        +R++NR GKG++  ++++  + G LV++  V
Sbjct: 747 -------------------------PIAIYRVTNRGGKGVKTMNITE--KTGKLVSIKLV 779

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDEA 906
           +D++ I++++  G  IR+ V++IR+  RAT+GV + +   +++ + +V ++ +++I +E 
Sbjct: 780 DDSNDIMIINKSGMAIRMHVSDIRVMGRATQGVRLINLERRNDEIAAVCKV-DADIEEEN 838

Query: 907 ESTE 910
           +S +
Sbjct: 839 DSVD 842


>gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
 gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
          Length = 831

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/900 (42%), Positives = 547/900 (60%), Gaps = 88/900 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY 
Sbjct: 6   NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  V +ID+P  +L+ +++ I GPDFPTG +I G+ GIK AY TGRG I IR 
Sbjct: 186 HRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIYGKNGIKEAYETGRGRIKIRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  IA++RDESDR G RVV+
Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIRVVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLALFISHRKSVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+++            
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL RD I NE   L  EI+    IL 
Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILR 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 459 SEELLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  
Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N++SL   E+I   +   +      +  + F TK+G ++R  LS+F  I   G
Sbjct: 579 AIGKAVVNLISLAPDEKIMATITTKDFNE---DKSIAFFTKNGIIKRTNLSEFKNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +    E   IL+ T  G CVRF +  +R    R + GV  I    
Sbjct: 636 VKAINLDGDDELVTAKIIHPEIQQILVVTYEGMCVRFGVDNVREIG-RVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                                                 
Sbjct: 695 PKDYVIGATVVSSE---------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 709 ------NEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  + E   E +  E
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCPKEEKEIEEDLPE 819


>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
 gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
          Length = 875

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/907 (39%), Positives = 526/907 (57%), Gaps = 71/907 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        + +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADSVGPGGGGPGDSDDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E+++G +A+I+NPD+    L+ +I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y  GRGSI +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IAELV +K+
Sbjct: 241 IRETYLGGRGSITMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T+LQS FS  M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L  R                            LS++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQDR--------------------------HGLSDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  + D   TPRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV V+  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLVTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++P  E     +++ ++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLIPVSEFN---DDMDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +  G  + F +S 
Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALRWVRLAVPGDSVLIGSNAGMTIHFRLSD 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L +GD ++SM ++    A                         
Sbjct: 692 EELRPLGRTARGVRSMNLREGDGLVSMDVLPVELA------------------------- 726

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                 D   +    +E          ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 727 ------DRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMK 780

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               ++  ALV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R+
Sbjct: 781 FRTTDD--ALVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRL 838

Query: 892 VSVERIR 898
             V  + 
Sbjct: 839 SEVVLVP 845


>gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 928

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/883 (43%), Positives = 539/883 (61%), Gaps = 61/883 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   
Sbjct: 423 EMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ V
Sbjct: 482 ILNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY
Sbjct: 542 VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---------------------- 637
             K + +P  S  ARG+ L+N+L L+ GE ITT++P                        
Sbjct: 602 WLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDA 661

Query: 638 ------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                 E+E              ++  +T +G V++  L  F +   SG IA++LD  D 
Sbjct: 662 ENSSETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDI 721

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L++G ++ISM I   
Sbjct: 722 LISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLSEGQKLISMLI--- 777

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-----KLKEQ 798
                +E    +          +  +E     +    V   +S ER   L      L  +
Sbjct: 778 ----PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            I+ +S++G   RT   +     R+ +G+    ++   ++  L
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEKLVGL 876


>gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
 gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 871

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/894 (37%), Positives = 533/894 (59%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +G+     + K
Sbjct: 5   EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K +  ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG  GIAVGMATN+P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++G +A ++N DI++D LM+ I+ PDFPTG +I G  G++ A+ TGRG IV+R  
Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+    RE I+V+EIPYQVNKA M+++ A+LV EK+I  I+++RDESDR G R+V  
Sbjct: 245 VGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVYI 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  FV  R +VVVRRT
Sbjct: 304 LKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIHYFVEHRHDVVVRRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L KA +RAH+L GL IA  N+DEV+ +IR S N + A+ +L++R             
Sbjct: 364 KFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIER------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS++Q+RAI+E+RL +LTGL +D +R E   L   I+    +L+ 
Sbjct: 411 -------------FKLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLAD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +    +IK+EL  ++ +    RR++I     D+  ED I  E++V+T+SH GY+KR  L
Sbjct: 458 VNLRTALIKEELEDMRAKYGDERRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y+ Q RGG G+     RD DF+  +++ + H  ++FF+  G  Y  +V+ +P GS  A
Sbjct: 518 NEYKTQNRGGVGQKSAGTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTA 577

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+AL N++++   +++   +   +  D+    +  ++  TK G V++  L  + +   +
Sbjct: 578 KGRALQNLINIESDDKVKAFICTQDLKDKDYTTSHNLIMVTKKGMVKKTSLDKYSKPRVN 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   DE+LS +     + I++  K G+ +RF  +  R    R + GVRGI L  
Sbjct: 638 GVAAITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRFEETKTRPMG-RTASGVRGIRLKD 696

Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI +  V                                                 
Sbjct: 697 ESDEVIGLVSVND----------------------------------------------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E  ++  +  G  KR+S  ++RI+NR GKG++  ++++  + G L+++  V D 
Sbjct: 710 ---MNSEILVVAENGYG--KRSSLDEYRITNRGGKGVKTLNITE--KTGQLISINTVTDA 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ + ++ +
Sbjct: 763 DDLMIINKSGLTIRMAVEDLRVMGRATQGVKLINLKGKDSIAAVTKVMKDDVEE 816


>gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
 gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
          Length = 843

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/916 (40%), Positives = 542/916 (59%), Gaps = 100/916 (10%)

Query: 1   MTEHIISSDEEEEKGITS-----------VSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           M +  I+S+  +E  +              ++   M++S+L Y+++VI+ RA+PD+RDGL
Sbjct: 1   MNDDTITSNTAQEGEVIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRILF M + G     ++VK ARI+G+VMGKYHPHG+AAIYD++ R+AQDWS+R +
Sbjct: 61  KPVHRRILFSMEKNGWRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYM 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGS+DGDPPAA RYTE R+ K    LL DL K+TVDFR NYDG  +EP VL A
Sbjct: 121 LVDGQGNFGSMDGDPPAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPA 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTG 228
           + PN+L+NG  GIAVGMATNIP HNL E+VD  V +ID PD   L+ L++ ++GPDFPTG
Sbjct: 181 KLPNLLLNGQIGIAVGMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTG 240

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
            ++ G   ++ AYATGRG I +R ++ IE+T   + QIVVTE+PY VNKA ++E+IAEL 
Sbjct: 241 GIVYGGDSMRQAYATGRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELH 300

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY- 347
           +EK+I  I D+RDES R   R+VIELK+ +    +LNQLY+ T+LQ+ F  NM+AL    
Sbjct: 301 KEKKIT-IQDVRDESARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDGI 359

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P    L  IL+ ++  R+ VV RRT++ L KA+DRAH+L G  IA+ N+DEV++IIR S
Sbjct: 360 QPRVLGLQDILEEYLKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRAS 419

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
            N + A R LM +                            LSEVQ ++IL L L  LTG
Sbjct: 420 QNTDEAARNLMDK--------------------------FKLSEVQAKSILALPLRTLTG 453

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLD 526
           L R  I +EL  L   I +   IL+    +L IIK ELL +K++    RRT+I+ + L  
Sbjct: 454 LERQKIEDELAELRALIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGK 513

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
             DE+ I  ED++V ++   Y+KR  +S YR Q RGGKG+ G+  ++ D +  L   STH
Sbjct: 514 FSDEELIPDEDVIVLLTTENYIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTH 573

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +LFF++ G V++ K + +P  S  A+G A +N+L L   ERIT+I+    ++   ++ 
Sbjct: 574 EWLLFFTNRGRVFRIKTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRL--EKGQKDDG 631

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+  AT HG V++  L ++  I  +G IA+KLD  DE+  +   + +N+++++T  GQ +
Sbjct: 632 YLFMATTHGTVKKTPLKEYSNIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAI 691

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  S  R    R++ GVRGI L  GD+++ M                            
Sbjct: 692 RFNESDARPMG-RSARGVRGIRLRPGDRLVGM---------------------------- 722

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                    +L  ++  +L VS+KG+GK T + +F    R G G
Sbjct: 723 -------------------------DLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVG 757

Query: 827 IRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           I++  V+   + G +VAV  +     +++++S KG  IRV + +I    R T+GV I   
Sbjct: 758 IKSAVVTA--KTGNVVAVRSLEPEASEVLIISTKGQAIRVGLQDIPTLGRTTQGVRIMRL 815

Query: 886 AKDERVVSVERIRESE 901
           ++ + V S+  I E +
Sbjct: 816 SEGDEVASLGIIPEQQ 831


>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 812

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/891 (39%), Positives = 533/891 (59%), Gaps = 86/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + I  E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K + K
Sbjct: 8   EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I GEVMGKYHPHG+AAIY  + ++AQ++++R  L++G GNFGS+DGD  AA RYTE 
Sbjct: 68  SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  LL D+ KDTVD+RPNYD S +EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V G    IDNPDI ++ LM+ I GPDFPTG  IL   GI+ AY TGRG+I  R  
Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGG-ILEARGIRQAYETGRGTIRTRAR 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+  G +  IVVTEIPYQVNKA ++EKIAELVR+K++  I DLRDESDR+G R+VIE
Sbjct: 247 YEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  + +VILN+L+R+T ++  F + M++L   +P    L  +++ +V  R+EV+ RRT
Sbjct: 307 LRKDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGEPRILNLKEMIQYYVEHRQEVINRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y LN A++R H+L GL IA+ NLDE++ +IR S + E AR EL  R             
Sbjct: 367 TYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSR------------- 413

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q  AIL++RL +LTGL R  + NE   + + I +  DIL+ 
Sbjct: 414 -------------FNLSEIQANAILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILAR 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+L +IK++L  ++      RRT I +     E+ED I   ++V+T+S+ GYVKR PL
Sbjct: 461 PERVLSMIKEDLDDIEKRYGDNRRTEISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPL 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGGKG S   +R EDF  D+ + S   ++LFF++ G V+  + +++P  S QA
Sbjct: 521 DTYRSQKRGGKGVSATTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  L+N L L  GE++TTI+   E        +++  TK G +++  L  F  + +SG 
Sbjct: 581 KGMPLVNFLELRPGEKVTTIVGAREFN---REHHLLMVTKKGIIKKTALKAFQNVRKSGL 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V      + +++    G  + F    +R    R + GV+ I+L+K D
Sbjct: 638 IAVNLREDDELVGVIRVKTGSKVMIANSRGISIMFDEKQVRSMG-RTAAGVKAINLSKDD 696

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ +                                                     + 
Sbjct: 697 YVVGL-----------------------------------------------------DR 703

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +L V+EKG+GKRT+  +F++ NR GKG++A ++++ N  G LVA   V+  D++
Sbjct: 704 YREGADVLLVTEKGYGKRTALSEFKLQNRGGKGLKAIEITRRN--GKLVAFQIVSKEDEL 761

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++++ +G +IR+ V +I    R ++GV++    +++R+V V R +  +  D
Sbjct: 762 VILTSEGNIIRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFKIEKEED 812


>gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 813

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/895 (40%), Positives = 539/895 (60%), Gaps = 85/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           ++++SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G  +N+ Y K A
Sbjct: 1   MSNISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL RMAQD+++R  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A   L D+ K+TV+FR NYD +  EP VL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 SRLAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+D  + ++DNP+ ++  LM+ I+ PD PTGA I    G+  AY TGRGS  IR    
Sbjct: 181 GEVIDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLKGVLEAYRTGRGSFKIRSRLD 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E  S   E IV+ E+PY +NKA ++EKIA LV +K+I  I+DLRDESDR G R+VI+LK
Sbjct: 241 VETRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +GA +DVI+N+LY+ T+L++ F +NM+A+   +P+   L  +L+ F+  R+EV++RR+++
Sbjct: 301 KGAISDVIINKLYKLTALETSFGINMMAVVNNRPQLLNLKQVLEYFLEHRKEVILRRSRH 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ N+DEVVR+IR S     AR +L+                 
Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLISN--------------- 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS+VQ +AIL++RL RLT + R+ +  E   L  +I+    IL +  
Sbjct: 406 -----------FSLSQVQAQAILDMRLQRLTNMEREKLMQEYRELLQQIEFLKSILENID 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G IK+EL  +K    TPRRT+I+E   D +E  D I   D+VVT+S  GY+KR  L 
Sbjct: 455 ILKGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLE 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG +G  + D+DF+T LF  S H  +  FS+ G  Y  K + +P GS  AR
Sbjct: 515 YYHQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L+  E I T +    + +     Y +F TK G V++  +  F  +   G I
Sbjct: 575 GVHIKNLLPLDNEEYIATALS---ERNFHQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V+    E+++++TT  G  +RF    +R    RN+ GV+GISL +GD+
Sbjct: 632 AVNLKPGDELIGVKVVKDESEVIITTHDGLAIRFACRELRAMG-RNAAGVKGISLRQGDE 690

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S A++   +A                                                
Sbjct: 691 VVSGAVLDPGEA------------------------------------------------ 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              + + T+SEKGFGK+TS   +++  R GKG+    V+  ++ G +V+  PV+D +++I
Sbjct: 703 ---RELFTISEKGFGKKTSLDMYKLQARGGKGLINMKVT--SKTGKVVSSMPVSDQEELI 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE-RIRESEIVDEAES 908
           + +    +IR+  ++IR   R+T+GV +     D++V+  +  I E  ++ + E 
Sbjct: 758 IFTSANKIIRLGTSDIRSVGRSTQGVKMVDLENDQKVICADLIIPEQHLLGDKEE 812


>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
 gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 865

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/919 (37%), Positives = 536/919 (58%), Gaps = 69/919 (7%)

Query: 1   MTEHIISSDE----EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M++ I+ SD     E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRI
Sbjct: 1   MSD-ILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRI 59

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GN
Sbjct: 60  LYAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGN 119

Query: 117 FGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           FGSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L
Sbjct: 120 FGSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVGMATNIP HNLGE+++G  ++I NP ++   L EII+GPDFPTG  ILGR 
Sbjct: 180 LNGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQILGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GIK  + TGRGSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK
Sbjct: 240 GIKETFKTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P  
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  
Sbjct: 360 LSLRKMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTV 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +AR  L                               LS  Q  AIL+++L RLT L  D
Sbjct: 420 SARENL--------------------------QADHELSATQAEAILQMQLRRLTALEAD 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I+ E + L  +I     IL+S+ R+  II +EL  + +   +PR+T I++    ++D D
Sbjct: 454 KIKGEHDELTRKINLYKQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDID 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L 
Sbjct: 514 LIANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLL 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +S  N+ Y++  
Sbjct: 574 FSDRGVSYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFDNDCYLLML 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ ++ G  + F + 
Sbjct: 631 TKAGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLD 690

Query: 712 AIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              +   GR + GV+ ++L KGD ++SM ++                           T 
Sbjct: 691 INELRPLGRTARGVKSMNLRKGDNLVSMDVL---------------------------TS 723

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           ++      S      S+E  +    +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 724 DLVDQLAKSEDITKESDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                +++  LV +  + + ++++ V++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KFRIKDDV--LVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDMGDH 841

Query: 891 VVSVERIRESEIVDEAEST 909
           +  V  +   +  +  +S 
Sbjct: 842 LSEVVLVPHEQTEEADQSN 860



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 96/259 (37%), Gaps = 25/259 (9%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +   D    +  ++ ++  G++KR  LS +   R    G   + + D D +T +
Sbjct: 609 EEKITSLVAVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIRS--NGLIAINLEDGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINIL---------------- 622
            +     SVL  S  G    ++  +  L      ARG   +N+                 
Sbjct: 667 RLSREGDSVLIGSRTGMAIHFRLDINELRPLGRTARGVKSMNLRKGDNLVSMDVLTSDLV 726

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-- 679
             L + E IT       + +S    +V+ A+  G  +R  ++ F    R+G     +   
Sbjct: 727 DQLAKSEDITKESDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFR 786

Query: 680 -SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++ ++   +  ++L  T+ G  VR           R + GV+   L  GD +  +
Sbjct: 787 IKDDVLVCLKVLGEGEELLFVTEKGVIVRTNA-DKISQQSRAATGVKLQRLDMGDHLSEV 845

Query: 739 AIVLHADADYDERICYMKH 757
            +V H   +  ++    K 
Sbjct: 846 VLVPHEQTEEADQSNSDKE 864


>gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
 gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 856

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/902 (40%), Positives = 547/902 (60%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I D +++SYL Y+++VI+GRA+PD +DGLKPVHRRILF M  + +     Y
Sbjct: 6   ENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSARAPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  LI+GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R  K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 ESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++D  + ++DNP+   D LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE T G +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR G RVV
Sbjct: 246 AKHHIE-TRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A +++++N LY+ T +++ F + ++A+   +P+ FTL  +L  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLNVFISHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L   I E   IL
Sbjct: 414 ---------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+ IIK+EL  ++++  + R T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 KSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + + S +   + F T++G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS---LAFFTRNGVVKRTSLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +  T     +++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKFK 694

Query: 731 KG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   +V + + +                                          
Sbjct: 695 HDTDFVVDANVVDNIEQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +LTVS+KG GKRT+  ++R +NR+G G+ +  +S   + G +V    V++
Sbjct: 713 ----------LLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--KTGNVVGAVLVDE 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EAES 908
              +++++  G +IRV +  IR A R T GV+I +    ++VVS+ +  + +  + + E+
Sbjct: 761 AQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKEDDDELDIEN 820

Query: 909 TE 910
            +
Sbjct: 821 AD 822


>gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3]
          Length = 878

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/897 (40%), Positives = 547/897 (60%), Gaps = 59/897 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +     +K Y K
Sbjct: 13  EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA   GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDGDPPAA RYTE 
Sbjct: 73  CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GIAVGMATNIP H
Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG 
Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGK 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I    G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDESD+ G R+V E
Sbjct: 253 AEI-VEEGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVYE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++AF+++++ RRT
Sbjct: 312 LKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R       K L   
Sbjct: 372 AFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQRA 431

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + ++   +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  +I + LDILSS
Sbjct: 432 MGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSS 491

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+  IIK+E+ ++K++    RRT I     +++ ED I  E+ V+T +++GY+KR P+
Sbjct: 492 DERVKEIIKEEITAIKEKYGDERRTAIEPISGEVDIEDLIPEEECVLTYTNIGYIKRQPV 551

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
            VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q+
Sbjct: 552 DVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQS 611

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L DF  + ++G 
Sbjct: 612 RGTNIVNLLQLDEGERIAAMMKTSDFAE---NKYFICVTKYGKIKRTPLYDFRNVRKNGL 668

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DEI +      ++ I++ T LG  + F    IR    R + GVR I L + D
Sbjct: 669 RAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSMG-RLAAGVRAIKLREDD 727

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++  A V   D                                                
Sbjct: 728 YIVGAAKVYSDD------------------------------------------------ 739

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ILTV++KG+G+ ++  D+R+ NR G G++   +   ++ G +  +  +  +D +
Sbjct: 740 ----MRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVCGIRSIQTDDDV 793

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E  D  E  +
Sbjct: 794 ILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETADIEEVEQ 850


>gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1]
 gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
          Length = 815

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/898 (39%), Positives = 549/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D+S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDNSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E                  KG+GKRT + ++ I +R   G++ T+V++ N  G LV V  
Sbjct: 717 E------------------KGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
 gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
          Length = 815

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D+S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDNSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E                  KG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 E------------------KGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
 gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
          Length = 819

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/889 (40%), Positives = 537/889 (60%), Gaps = 86/889 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y+ + RMAQD++ R  LI+G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++DG +A+I+N +I  + LME + GPDFPTG +I G  GI  AY TGRG + +RG 
Sbjct: 182 NLGELLDGVLALIENKEITPEELMEYVTGPDFPTGGIIDGTKGIYEAYTTGRGRVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVI 312
             IE+    +  I++TEIP+QVNKA ++EKIAELV+EK+I  I DLRDES  R+G R+V+
Sbjct: 242 VDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVV 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +++LN++Y+YT LQ+ F + ++AL    P+   L  IL  ++  R +V+ RR
Sbjct: 302 ELKRDEEPEIVLNKIYKYTELQNTFGIILLALVDNMPKVLNLKEILSHYINHRFDVITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L K+ +RAH+L G  +A+ N+D ++ IIR S +  TAR  L+++            
Sbjct: 362 TKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S++Q R+IL+++L RLTGL R+ + NE  +L   IKE  DILS
Sbjct: 410 --------------YSFSDIQARSILDMKLQRLTGLEREKVENEYTALMEHIKELKDILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +  R+  IIK++   +K++    RRT+I E  LD+  ED I  E ++VT+++ GYVKR+ 
Sbjct: 456 NDQRVYDIIKEDCEELKEKYSDERRTQIEEERLDINIEDLIKDEKVIVTLTNKGYVKRMN 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+AQ+RGGKG S     + DF+ +++  S   +++ F+  G VY  KV+ +P  S Q
Sbjct: 516 LDKYKAQKRGGKGVSTQNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQ 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGK + N+++L + E++ +I+   E   + +   ++F TK G V++  LS+F  +NRSG
Sbjct: 576 SRGKLIANLINLQENEKVKSIIKTREFSDTQD---LLFVTKEGLVKKTVLSEFKNLNRSG 632

Query: 673 KIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+KL   D+++ V       + + + TK G  ++FP    R    R ++GVRGI+L K
Sbjct: 633 LRAIKLKDGDDLIFVGLVESPNDQVFIATKNGYSIKFPHENARNMG-RATIGVRGINLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+S  I+   D                                              
Sbjct: 692 DDDVVSAVIIKRDDTT-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILTV+E G+GKRT   ++ + +RSGKG+     ++  + G +V V  V + +
Sbjct: 708 --------ILTVTENGYGKRTREDEYPLQSRSGKGVINLRCNE--KTGVVVEVTSVTEEE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ ++  G +IR P + I +  RAT+GV I    +DE++VS+ ++ ++
Sbjct: 758 ELMAITSNGIVIRTPADTISLIGRATQGVRIMRVEEDEKLVSIVKVMKN 806


>gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 815

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D+S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDNSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E                  KG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 E------------------KGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
 gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
          Length = 851

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/904 (38%), Positives = 543/904 (60%), Gaps = 77/904 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV     
Sbjct: 2   SEGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K +  +L D+ K+TVDF+ N+D + QEP V+  + P +L+NG  GIAVGMATN+
Sbjct: 122 TEARMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL EVVDG +A IDN DI++D L+  I+ PDFPTG +I G  G++ A+ TGRG IV+
Sbjct: 182 APHNLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIYGYEGVREAFKTGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+    RE I+VTEIPYQVNKA M++  A+LV +K+I  I+++RDESDR G RV
Sbjct: 242 RAKVGFEEV-NGREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELKR A  +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  FV  R +VVV
Sbjct: 301 VYELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIYHFVEHRHDVVV 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA +RAH+L GL IA  N+DEV++IIR S + + AR  L++R          
Sbjct: 361 RRAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    ++
Sbjct: 411 ----------------FKLSEIQARAIVEMRLRQLTGLEQDKLRAEYEEIMKLITYLKEL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S+   + +IK EL  ++D+    RR++I     D+  ED I  E +V+T+SH GY+KR
Sbjct: 455 LASKEMRMQVIKDELAEIRDKYGDERRSQIEYSGGDVSIEDLIADESVVITISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y+ Q RGG G+     RD+DF+  LF+ + H  +++F+  G  Y  +V+ +P G+
Sbjct: 515 TSLSEYKTQNRGGVGQKSAGTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGT 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N++++   +++   +   +  D+    +  ++  TK G V++  L  + + 
Sbjct: 575 KASKGRAIQNLINIESDDKVKAFICTQDLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ +   DE+L  +     + +L+  K G+ VRF     R    R + GVRGI+
Sbjct: 635 RVNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPMG-RTASGVRGIT 693

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA + D+VI +  V   D +  + +   ++   +R  +                      
Sbjct: 694 LADENDEVIGIVTVNKEDVNETQILVVTENGYGKRTKL---------------------- 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V E G         +RI+NR GKG++  ++++  + GAL+A+  V
Sbjct: 732 ---------------VEEDG------VDVYRITNRGGKGVKTLNITE--KTGALIAINNV 768

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
            D+D +++++  G  IR+ V+++R+  RAT+GV + +   ++ + +V ++ RE E +   
Sbjct: 769 TDDDDLMIINKSGLTIRMMVSDLRVMGRATQGVKLINIKGNDSIAAVTKVLREDEEIVLD 828

Query: 907 ESTE 910
           E+ E
Sbjct: 829 ENGE 832


>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
 gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
          Length = 872

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/917 (38%), Positives = 537/917 (58%), Gaps = 71/917 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  +     E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I NP+++   LM II+GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  Y +GRGSI +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IA++V +K+
Sbjct: 241 IKETYLSGRGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  IAD+RDESDR G R+V+EL+R +   V+LN L++ T LQ+ FS NM+AL   +P   
Sbjct: 301 LEGIADIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVIL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L+ F+ FR E + +RTKYLL KA  R H+L+GL +A+  LDE++ +IR + +  T
Sbjct: 361 SLRKMLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+ +L +                             L+++Q+ AIL+++L RLT L  D 
Sbjct: 421 AKNKLQE--------------------------LHGLTDIQSDAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL+ + R+  I K EL  +K++ +T RRT I++    +ED D 
Sbjct: 455 IRLEHEDLVKKITDLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G++G   + E+ V      + H S+L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++      S  +  Y++  T
Sbjct: 575 SDRGISYALPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLSVS---SFDDENYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 RGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLND 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR++ GV+ ++L  GD ++SM ++    AD+ ++    +  S            
Sbjct: 692 SELRPLGRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELHSESSESEG----- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                      ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 747 --------------------------PWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIK 780

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             K  +   LV +  +   ++++LVS++G ++R   ++I   SRA  GV I      +++
Sbjct: 781 FRKDGD--ELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKL 838

Query: 892 VSVERIRESEIVDEAES 908
             V  +   +I D+ E+
Sbjct: 839 SEVVLVPPEQINDDDEN 855


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/840 (43%), Positives = 529/840 (62%), Gaps = 41/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GYV
Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E  +    LY+ F TKHG  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V        I++ TK G  +RFP + +R    R + GV+GI+
Sbjct: 634 RNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMG-RTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+       +E    +       +    +     S          I+E 
Sbjct: 693 LTDDDVVVGMEILE------EESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITEN 746

Query: 789 RCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             Q + +K    E+ ++ ++  G   R    D  I+ R  +G+R   +++   +  +  V
Sbjct: 747 NGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/857 (45%), Positives = 544/857 (63%), Gaps = 18/857 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+ C+A++DNP++ LD +MEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAIINGRAGIIQGYRTGKGRVVIRAR 245

Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE     +R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR   ADVILN LY +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 EIKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ ++W    +K +++
Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425

Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                    DD +   G SD    LS  Q +AILELRL RLT L +D I  E   L I I
Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ ELL +K +    RRT I     D+  ED I  E++VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y+AQRRGGKG+S   ++DEDFV+ L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  +RG+ +INIL L +GE I  ++P  E +  +   YV  AT++G V++  L+ 
Sbjct: 606 QLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGF---YVFMATRNGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ LD  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRP-TGRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERIC-YMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI + +   VIS+ +              Y K        +SG   +       +   G
Sbjct: 722 RGIRIEEDQAVISLIVAHPNGTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERNG 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +               + +++KG   R    +  I  R+ +G+R  +VS    +  +  
Sbjct: 782 KVVR---SVQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQK 838

Query: 844 VFPVNDN-DQIILVSDK 859
           +  + D  D++ + +D+
Sbjct: 839 IEDLGDESDELDVDTDE 855



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 98/251 (39%), Gaps = 15/251 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   +  G VK+VPL+ +   R    G   V + + D +  + 
Sbjct: 629 EEINAMLPVREYQEGFYVFMATRNGTVKKVPLNAFSRPRS--NGIIAVDLDENDRLVGVD 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I      ++ F+  G V +    ++      ARG   +  + + + + + +++       
Sbjct: 687 ITDGTRDIMLFTDAGKVIRFDESKVRPTGRTARG---VRGIRIEEDQAVISLIV------ 737

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
           +  N  ++ AT+HG  +R  + ++    R G         +   +++        ++ +L
Sbjct: 738 AHPNGTILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERNGKVVRSVQVNDSDEAML 797

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VRF +S + +   RN+ GVR I+++ G+ V+ M  +     + DE        
Sbjct: 798 ITDKGTLVRFRVSELSIIG-RNTQGVRLINVSSGELVVGMQKIEDLGDESDELDVDTDEA 856

Query: 759 SAQRRLISGDT 769
           S        D 
Sbjct: 857 SDIGNSDEHDD 867


>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
 gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
          Length = 853

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/899 (40%), Positives = 537/899 (59%), Gaps = 82/899 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E       ++ I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K
Sbjct: 33  ETNMTNEVNIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTHDK 92

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++++Y+A+ R+AQD+++R LL++G GNFGSVDGD  AA R
Sbjct: 93  PFKKSARIVGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVDGDEAAAMR 152

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATN
Sbjct: 153 YTEARMAKITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTGIAVGMATN 212

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+ DG VA+IDN +I +D L+  I+GPDFPTG +I G+ GI  AY TGRG I 
Sbjct: 213 IPPHNLSEICDGIVALIDNREISVDELINYIKGPDFPTGGIINGKQGIYEAYRTGRGKIK 272

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + G   IE +   +E I+VTE+PYQVNKA ++EKIAELVR K++  I+DLRDESDR+G R
Sbjct: 273 VAGKVKIETSKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLRDESDREGIR 332

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+G  +++ILN LY++T LQ+ F + M+AL    P    L  IL+ ++  R  V+
Sbjct: 333 IVIELKKGEESELILNSLYKFTDLQNTFGIIMLALVNNAPRVLNLKQILENYLEHRYNVI 392

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA +RAH+L G  IA+ N+DEV+RIIR S +   AR +L+           
Sbjct: 393 TRRVQFELNKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLIA---------- 442

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +   SE+Q +AIL++RL RLTGL RD I  E   L + I+E   
Sbjct: 443 ----------------SFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRS 486

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+  S+   IIK E++ +K++    RRT I E  +++  ED I  ED+VVT++  GYVK
Sbjct: 487 ILADDSKKYRIIKDEVIKLKEDFGDKRRTEIKEARVEIGIEDLIKDEDVVVTLTEKGYVK 546

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  Y +QRRGG G +     ++D + D++I     ++L F++ G V+  KV+ +P  
Sbjct: 547 RTSIDTYHSQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEA 606

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QARGK + N++ L++ ER++T++   E E    +  + F TK G V++  L+ F  IN
Sbjct: 607 GKQARGKLISNLIKLSEDERVSTVIRVREFE---KDKAIFFITKDGVVKKTDLTLFANIN 663

Query: 670 RSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++G  A+ L   DE+      +    ++I + T+ G  +RF    +RV   R + GV+GI
Sbjct: 664 KTGIRALTLRDEDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVMG-RTAAGVKGI 722

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V++  I+                                           ISE
Sbjct: 723 TLRDKDYVVAAVIINPE---------------------------------------KISE 743

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           E       +E         G+GKRT+  ++++ +R GKGI    +++  + G +V V  V
Sbjct: 744 ELSVMTITEE---------GYGKRTALSEYKVQSRGGKGIINLKINE--KTGKIVDVKIV 792

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +D  +I+L++ +GTLIR  V+ + +  RAT GV I     +E+V S  +I E+   ++ 
Sbjct: 793 DDKTEIMLITSEGTLIRTKVDTVSVIGRATSGVRIMKVRNEEKVASAVKIAENPEEEKE 851


>gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 847

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/885 (40%), Positives = 531/885 (60%), Gaps = 69/885 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +MG +WNK Y K ARI G V+GK
Sbjct: 17  LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YDA+ RMAQ++SLR  LI+GQGNFGSVDGD  AA RYTE RL K +H +L 
Sbjct: 77  YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL KDTV++  NYD +   P V+  + PN+L+NG  GIAVGMATNIP HN+GE+++ C+A
Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG-DR 263
            +DN +I +  LM+ + GPDFPT  +I G  GI++AY+TGRG I IR  S I   +   R
Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIKGIEDAYSTGRGKIYIRANSKIISDNKTKR 256

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E I++ EIPYQVNK  ++EKIA+LV+EK+I  I+ LRDESDR G R+V+E+KR    +++
Sbjct: 257 ESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEIV 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY  T LQ  F +NMVAL   +P+  +L  IL  F+  R  ++ R+T + L K   R
Sbjct: 317 LNNLYSMTQLQISFGINMVALCYGQPKTLSLKKILSYFLYHRRVIITRKTNFELKKIYYR 376

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID---------LI 434
            ++L    IA+ N+D V+ +I+ S + E A+ +L+   W+ ++I  +++           
Sbjct: 377 LNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFSKK 436

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              +         ++S+ Q +AIL+LRL +L  L    +  E   L  +  +   IL   
Sbjct: 437 QKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILKYP 496

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L   IK+ELL +K E +  RRT+I++  +++  ED I ++D++VT+SH GYVK  PL 
Sbjct: 497 DELTNSIKKELLILKQEYNDKRRTKIIKKPVNINIEDLINQKDVIVTLSHQGYVKYQPLK 556

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQ RGGKG+S   ++++DF+    + +TH S+L FSS G VY  K+++LP  S  + 
Sbjct: 557 DYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIFQLPENSRGSI 616

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK +IN+L L   E IT I+PF + E     LYV  AT  G V++  L +F +   SG I
Sbjct: 617 GKPIINLLPLESKEYITAILPFRKYE---KKLYVFMATASGIVKKTALHEFSRPRSSGII 673

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+S D+++  +      + +L ++ G+ VRFP + +R    R + GV+GISL  GD+
Sbjct: 674 AVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNMG-RAASGVKGISLIPGDR 732

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ I                                                      
Sbjct: 733 VVSLII-----------------------------------------------------P 739

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ILTV++ G+GKRT   ++   +R+ +G+ +  VSK N  G +V    VND DQI+
Sbjct: 740 KNNSPILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRN--GKVVGAVQVNDYDQIM 797

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++D GTL+R+ V+E+ I  R T GV +   + +  VV ++R+ E
Sbjct: 798 IITDSGTLVRIRVSEVSIVGRNTHGVRLIRISNNNNVVGLQRVVE 842


>gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
 gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
          Length = 829

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/888 (42%), Positives = 543/888 (61%), Gaps = 88/888 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY 
Sbjct: 6   NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  V +IDNP  +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R 
Sbjct: 186 HRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  I+++RDESDR+G RVVI
Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+ +            
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL R+ I NE   L  EI+    IL 
Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILR 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 459 SEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  
Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +      +  + F TK+G ++R  LS+F  I   G
Sbjct: 579 AIGKAVVNLINLAPDEKIMATITTKDFNE---DKSIAFFTKNGIIKRTNLSEFKNIRNVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +  +     IL+ T  G CVRF +  +R    R + GV  I    
Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREIG-RVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V +                                               
Sbjct: 695 PKDYVIGATVVSNE---------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 709 ------NEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCP 807


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/840 (43%), Positives = 529/840 (62%), Gaps = 41/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GYV
Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E  +    LY+ F TKHG  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V        I++ TK G  +RFP + +R    R + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMG-RTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+       +E    +       +    +     S          I+E 
Sbjct: 693 LTDDDVVVGMEILE------EESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITEN 746

Query: 789 RCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             Q + +K    E+ ++ ++  G   R    D  I+ R  +G+R   +++   +  +  V
Sbjct: 747 NGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 921

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/892 (38%), Positives = 508/892 (56%), Gaps = 89/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ +
Sbjct: 32  ETDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGF 91

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC+R+ GEVMG+YHPHG+++IYDAL R+ QDWSLR  L++GQGNFGS   DP AA RYT
Sbjct: 92  NKCSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYT 151

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+   +  L+ D+ K TVDF PNYDG   EP VL +R+PN+LVNG  GIAVGMAT IP
Sbjct: 152 ECRMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIP 211

Query: 192 THNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV    + V+++PD   D +    M  I+GPDFPTGA+I+GR GI++AY TGRGS
Sbjct: 212 PHNLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIMGRKGIEDAYRTGRGS 271

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I++R V  +E+    R+ +VV+E+PYQVN  ++ +KIAE V++ R+  IAD+RDE+  R 
Sbjct: 272 IIMRAVVEVEEIQ-GRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRT 330

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI L+R A A V+LN LY++T LQ+ F  NM+AL    P    +   ++ +V  + 
Sbjct: 331 GQRLVIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIDAFIRHWVDHQI 390

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRT YLL +A DR H+L GL  A+  LDEV+ +IR SP  E AR  L+        
Sbjct: 391 DVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLID------- 443

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + E+Q RAILEL+L RL  L R  I +E +++  EI++
Sbjct: 444 -------------------LLEIDEIQARAILELQLRRLAALERQKIIDEHDAIQREIED 484

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R   I+  EL ++ ++    RR+ I     DM  ED I  ED+VVT++  G
Sbjct: 485 YEDILAKPERQRNIVSDELGTIVEKYGDDRRSIIHGFDGDMSMEDLIPEEDVVVTITRGG 544

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y KR  +  YR+Q+RGGKG  G  +R ED V   F  ++H  +LFF++LG VY+ K + L
Sbjct: 545 YAKRTKVDAYRSQKRGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYEL 604

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ++G+ + NI++    E I  ++     E S    Y+V ATK+G V++ +LS++ 
Sbjct: 605 PDASRDSKGQHVANIMAFQPDEHIAQVLALRNYEIS---PYLVLATKNGLVKKTRLSEYD 661

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVR 725
                G IA+ L   DE++     +  +D+LL +K GQ VRF      +   GR++ GV 
Sbjct: 662 SPRTGGLIAVNLRDEDELVGAGLTSSADDLLLVSKKGQSVRFHADDATLRPMGRSTSGVT 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+     D ++SM+++                                            
Sbjct: 722 GMKFRGEDSLLSMSVIEEG----------------------------------------- 740

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +  V E G  KR+ +  + +  R+  G+     ++  + G LV   
Sbjct: 741 ----------TDPDVFVVFESGLAKRSQASQWNVKGRAILGVTVAKQTE--KGGDLVGAL 788

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V+++D++++V ++G ++R  V+E+R+  R T GV      K++ +V V R 
Sbjct: 789 TVSEDDEVMVVFERGNIVRSRVDEVRLTGRNTAGVWFAKPGKNDAIVGVARN 840


>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
 gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
          Length = 836

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/847 (42%), Positives = 529/847 (62%), Gaps = 35/847 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DKPNSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TG+GSI+
Sbjct: 183 IPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  ++ I+V E+PYQVNKA ++EKIAEL R+K+I  I DLRDESDR G R
Sbjct: 243 VRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN LY+ TSLQ+ F +N +AL   +P+   L   L+ ++  +  V+
Sbjct: 303 IVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ NLD V+ +IR S   + AR  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ VK+  +  RRT IV G  + +EDED I R+D+V++++H GY+
Sbjct: 457 ILADEEKVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +++GE +  I+   E     ++ Y+ F TK G  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVDKGEWVNAIIRVDE---FVDDWYLFFTTKQGISKRTPLSSFENI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IA+ L   DE++SV+    + D+++ TK G  +RF  + +R    R + GV+GI+
Sbjct: 634 RNSGLIALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSMG-RTATGVKGIT 692

Query: 729 LAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+VI M I+   +D     +  Y K    +   +     +     N +   G++  
Sbjct: 693 LDSEDEVIGMEILEEQSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +C     +E+ I+ ++  G   R S  D     R+ +G++   +     +  +  V   
Sbjct: 753 LKCV---SQEEDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809

Query: 848 NDNDQII 854
            D D+++
Sbjct: 810 EDEDEVL 816



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 105/253 (41%), Gaps = 15/253 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +   D  V +  +   +  G  KR PLS +   R    G   + +R+ED +  + 
Sbjct: 596 EWVNAIIRVDEFVDDWYLFFTTKQGISKRTPLSSFENIRNS--GLIALNLREEDELISVK 653

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  +  G + +     +      A G   +  ++L+  + +  +    E   
Sbjct: 654 LTDGKRDMVIGTKKGMLIRFNENDVRSMGRTATG---VKGITLDSEDEVIGMEILEEQSD 710

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
                 V+  TK+G  +R  + ++    R GK        D   ++++++  +QE DI+L
Sbjct: 711 ------VLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVALKCVSQEEDIML 764

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  +R  +S I     RN+ GV+ I L   + V ++A V  ++ + +      +H 
Sbjct: 765 ITVSGVLIRVSVSDISQMG-RNTQGVKVIRLGDEEFVSTVAKVQTSEDEDEVLDELDEHE 823

Query: 759 SAQRRLISGDTEE 771
                + + +TEE
Sbjct: 824 ETDIIVEAEETEE 836


>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
 gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
          Length = 878

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 528/905 (58%), Gaps = 66/905 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 14  ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RY
Sbjct: 74  YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRY 133

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATN
Sbjct: 134 TESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++G +A+I+NP+++ + L+ II GPDFPTG  ILGR GI+  Y TGRGS+ 
Sbjct: 194 IPPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQILGRAGIRETYLTGRGSVT 253

Query: 250 IRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  I+D+RDESDR
Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   TL  +L+ F+ FR
Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRRMLQVFIDFR 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR + +  TAR++L +R     
Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQER----- 428

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+++Q  AIL+++L RLT L  D IR E   L  +I 
Sbjct: 429 ---------------------HGLTDIQADAILQMQLRRLTALEADKIRLEHEDLVAKIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL  R R+ GII++EL  ++D     RRT I+     +ED D I  E  VV ++  
Sbjct: 468 DYKDILGRRERVFGIIQEELTQLRDRYPIERRTEILNIAAGLEDIDLIANERSVVLLTET 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R
Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  ++ +L + + E ITT++   E     ++  ++  T  G ++R +LS F
Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITTLLAVSE---FSDDSDLLMLTSGGFIKRTRLSAF 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724
             I  +G IA+ L+  D +  V      + +L+ T+ G  + F +S   +   GR + GV
Sbjct: 645 SNIRSNGLIAINLEEGDALTWVRQAVPGDSVLIGTRAGMTIHFRLSDEELRPLGRTARGV 704

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R ++L  GD ++SM ++    AD   +         +    S                  
Sbjct: 705 RSMNLRDGDALVSMDVLPVELADKVAQSSDDAADDDEGSAAS------------------ 746

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      +  ++L  S  G GKR     FR+  R+G G+R       N+   LVA+
Sbjct: 747 -----------EGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKF--RNQGDELVAL 793

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +   ++++LVS+KG ++R   + I   SRA  GV +    K + ++ V  +      D
Sbjct: 794 RVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDSLLKVVLVPPQAESD 853

Query: 905 EAEST 909
           E ++ 
Sbjct: 854 EDDAD 858


>gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
 gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
          Length = 837

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 529/896 (59%), Gaps = 92/896 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I    I +E++ S++ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M ++G+   + Y 
Sbjct: 7   RERILPRLIDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A + G+V+GKYHPHG++++YDAL RM Q +SLR  L++GQGNFGS+DGD  AA RYTE
Sbjct: 67  KSATVVGDVLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K+TVDF PN+D   +EP VL A +PN+LVNG  GIAVGMATNIP 
Sbjct: 127 ARLTRMAVEMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+   +A+IDNP++D  AL ++++GPDFPTG  I GR GI +   TGRG I++R 
Sbjct: 187 HNLREVISAVIALIDNPELDGPALRKLVKGPDFPTGGYIYGRAGIADYQDTGRGRIIMRA 246

Query: 253 VSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + I EK S  + QIVVTE+PYQVNKA ++  IAELVR++++  I+ LRDESD+ G RVV
Sbjct: 247 RAVIEEKESSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFVAFR 365
           IELKR A   V+LNQLY++T++QS F V M+AL          P+  TL   L+ ++A R
Sbjct: 307 IELKRDAIPRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHR 366

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+VRRT++ L+KA +R H+L GL IAV N+DEV+ +IR + +  TA  +L  R     
Sbjct: 367 HEVIVRRTQFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSR----- 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL +RLA+LTGL RD +  EL  +   I 
Sbjct: 422 ---------------------FGLSERQAEAILNMRLAKLTGLERDKLEEELVEVRAFIL 460

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E   IL SR R + I+K EL+ V +     RRT IV    +   ED I  E+MVVT++H 
Sbjct: 461 EMRGILESRDRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEEEMVVTITHG 520

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR PLS+Y  Q RGG+G++   +++ DF+   ++ STHT +L F+  G  +  KV  
Sbjct: 521 GYIKRTPLSLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLKVHE 580

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP      RGK ++N++++    RI  I+   E     +  +++F T++G V++  LS +
Sbjct: 581 LPQAGRNTRGKPIVNLINVTPDTRIRAIVVTKE---FSDTEFLLFCTRNGTVKKTALSQY 637

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                +G  A+K++  DE++ V+  +  ND++L T+ G  VRF  S +R    R++ GV+
Sbjct: 638 SNPRANGIKAIKIEQDDELMDVQVTSGNNDVVLATRHGLSVRFHESDVREMG-RDTTGVK 696

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   DQ++ M ++                                            
Sbjct: 697 GIELRPSDQLVGMVVIK------------------------------------------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +E  +L V+E+G GK +   ++R+  R GKGI   + +   + G ++A+ 
Sbjct: 714 ----------REATLLVVTERGLGKCSEVSEYRVQKRGGKGILTLNRTV--KTGDVIALM 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V   D+++L++ +G  IR  V+EIR+  RA +GV + +    + V +V R+   +
Sbjct: 762 EVVPEDELMLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDGVSAVARVIPDD 817


>gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 820

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/892 (39%), Positives = 516/892 (57%), Gaps = 89/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I   ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M  + +    K+
Sbjct: 5   ENELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G +HPHG   IY  L RMAQ W +R  L++GQGNFGSVDGDPPAA RYT
Sbjct: 65  RKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  L+DDL K+TVD  PNYD +  EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++    V+DNP+  +  +M+++  PDFPTG +I G  G+K AY TGRG I++R
Sbjct: 185 PHNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGGIICGYRGVKEAYHTGRGKIILR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV +IE    DRE +V+ +IPY VNK+ ++E+IAEL   K +  I+DLRDESD+ G R+V
Sbjct: 245 GVVNIE-EKKDREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG   DVI+NQLY++T LQ  F  NM+AL+   P    +  ++ ++V  R EVV R
Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLALDKGLPRTMNIKQLIGSWVDHRIEVVRR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA  R H+L G   A+ NLDEVV+IIR S + E A+  L++            
Sbjct: 364 RTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEH----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S  Q  A+L+LRL +LTGL RD I++E + L  +I+    +L
Sbjct: 413 ---------------FEFSIKQANAVLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   +  IIK+EL  ++ +  + R T+IVE   DM+ ED I  E  ++T+S   Y+KR+
Sbjct: 458 ASEQMVRDIIKEELDEIQVKHKSERATQIVEAEGDMDIEDLIANEPAIITISQDDYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           P+  +R QRRGG G  G    ++ED +  L++ +TH  +L F++LG  Y  KVW++P GS
Sbjct: 518 PVDTFREQRRGGTGVVGFNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGS 577

Query: 611 PQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            +++GK L+N+LS +   E I T++     E    + YV+ AT++G V++  +  F    
Sbjct: 578 RRSKGKPLVNLLSDIRSEESIATVLQTSNFE---GDRYVLMATRNGIVKKTPIDAFSNPR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G  A+ +   DE+        E  ++L T  G  VRF    +R    R + GV+G+SL
Sbjct: 635 RNGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRFDHHKVRSMG-RMARGVKGVSL 693

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+V+   +V   +                                           
Sbjct: 694 KGDNDRVVGCEVVSGNE------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V E GFGKR++  DFR +NR G G+R+   S+ N  G +V    + 
Sbjct: 711 ----------TVLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSERN--GKVVGAVCIT 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+D ++++S  G  +R+ + ++R+  R T+GV + +  +D+ +V+++++  +
Sbjct: 759 DDDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLANLREDDILVAIQKVESA 810


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/841 (43%), Positives = 528/841 (62%), Gaps = 41/841 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +
Sbjct: 2   NEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA 
Sbjct: 62  KAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI
Sbjct: 182 NIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G 
Sbjct: 242 TIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V
Sbjct: 302 RIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++        
Sbjct: 362 IRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  
Sbjct: 414 ------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL++  ++L II++EL  +K+  +  RRT IV  GL  +EDED I RE++VVT++H GY
Sbjct: 456 DILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLETIEDEDLIERENIVVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P
Sbjct: 516 IKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L + +GE I  I+P  E  +    LY+ F TKHG  +R  LS F  
Sbjct: 576 EYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE++ V        +++ TK G  +RFP + +R    R + GV+GI
Sbjct: 633 IRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREMG-RTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+ M I+       +E    +       +    +     S          I+E
Sbjct: 692 TLTDDDVVVGMEILE------EESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITE 745

Query: 788 ERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              Q + +K    E+ ++ ++  G   R    D  I+ R  +G+R   +++   +  +  
Sbjct: 746 NNGQLVTVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVAL 805

Query: 844 V 844
           V
Sbjct: 806 V 806


>gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
 gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
          Length = 922

 Score =  729 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/897 (39%), Positives = 533/897 (59%), Gaps = 20/897 (2%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +      VKCA+IS
Sbjct: 1   MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+  G YHPHG + IY  L RMAQ+W+ R LL++ QGNFGS+ G PPAA RYTE R+   
Sbjct: 61  GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+DL  DTVD+ P YD    EP VL ++YPN+LVNG  GIAVGMAT+IP HNLGEV
Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               V VI+ P + ++ L++II GPDFPTG +I GR+G++  Y TGR +I++R  + I+ 
Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIICGRSGVRRGYLTGRSTILVRSHTTIDN 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRG 317
               R +IV+ +IPYQ  +  + E+IA    E RIV I+ +R+ESD ++  R+V+ELKR 
Sbjct: 241 VK-GRNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELKRD 299

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A  D++LNQL+++T +Q  FS+ M+AL   KP   T+  ++  F+  R  V+ RRT++LL
Sbjct: 300 ADPDIVLNQLFQFTPIQDTFSIIMLALVDGKPRTLTIRDLIDEFIRHRVIVIRRRTQFLL 359

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI--DLID 435
           ++AR R H + GL +A+A++DE++RIIR S     A+  LM     AS +   +  +  +
Sbjct: 360 SRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPASMLARALGEEGFE 419

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                 G      L+ VQ  AIL + L +L  L ++ +  E   L  EI+E L ILS   
Sbjct: 420 LFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILSDER 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +  II+ ++L ++ +    RRT I +E L  ++ ED I  E MVV++SH GY+KR P +
Sbjct: 480 NIREIIRDQMLEIEAKFGDKRRTEISLEELGYIDLEDLIEEETMVVSISHSGYIKRTPAT 539

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+AQRRGGKG  G    D D +  LF+ STH  +LFF++ G VY +KV+ LP  S ++R
Sbjct: 540 TYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYDLPQLSRESR 599

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+A++N+L L +GERI       + +    + Y+V AT+ G V++ KL  + +  + G I
Sbjct: 600 GRAIVNLLQLEEGERIADCRAVRDFD--VEDHYLVMATRKGLVKKTKLEAYSRPMKKGII 657

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KL   DE++ V      ++++L+T  G  +RF  S  R    RNS GV+GI L   D+
Sbjct: 658 AIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPMG-RNSSGVKGIKLDADDE 716

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ M +     AD D ++  +      +R   G  +        S    N  +   +E  
Sbjct: 717 LVGMVV-----ADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAEE-- 769

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  +   +     + +S   +R   R GKG+R    +  N  G +V++  V+D D+++
Sbjct: 770 --EPVVEDEASGDDDELSSGAKYRTQRRGGKGLRDIKTTARN--GRVVSIVRVDDEDEVL 825

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAESTE 910
           +++ +G + RV   EI I  R T+GV I S  KD+ + +V R+ + + + DE ES+E
Sbjct: 826 MMTARGKIQRVSAAEISIVGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSE 882



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 109/348 (31%), Gaps = 70/348 (20%)

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS  SR   I+    L   + +   R              D  V +  +V  +  G VK+
Sbjct: 594 LSRESRGRAIVNLLQLEEGERIADCR-----------AVRDFDVEDHYLVMATRKGLVKK 642

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y   R   KG   + +R++D + D+ +      ++  +S G   +          
Sbjct: 643 TKLEAY--SRPMKKGIIAIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPMG 700

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-- 668
             + G   +  + L+  + +  ++    D        ++   +HG+ +R           
Sbjct: 701 RNSSG---VKGIKLDADDELVGMVVADPDAQ------LLTVCEHGHGKRTYFGPNQTRAD 751

Query: 669 ------------------------------------------NRSGKIAMKLDSRDE--- 683
                                                      R GK    + +      
Sbjct: 752 NAPPSDESANEDDSAAEEEPVVEDEASGDDDELSSGAKYRTQRRGGKGLRDIKTTARNGR 811

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++S+     E+++L+ T  G+  R   + I +   RN+ GVR +SL K D + ++  V  
Sbjct: 812 VVSIVRVDDEDEVLMMTARGKIQRVSAAEISIVG-RNTQGVRIMSLDKDDSLAAVVRVPK 870

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+  DE     +  +      +   E       D        E+  +
Sbjct: 871 DDSVDDELESSEEPSTPPADGGAPVVEPAPPEVTDVDSNSTAEEDSPE 918


>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
          Length = 809

 Score =  729 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/891 (39%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +E E GI  V I+ +M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ +
Sbjct: 1   MTDTKEFENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD+++R  L++GQGNFG++DGD  
Sbjct: 61  VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ KDTV+F PN+D   +EP +L +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HN+ EV+DG V  IDN DI +  L E+I+GPDFPTGA+I+GR GI  AY TGR
Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I +    REQI++TE+PYQVNK+A++ KIAEL ++K I  I+ + D S++
Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+LK+ A+A+V+LN+LY+ T LQ  + +  +AL   +P+   L  +++ +V  +
Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RRT++ LNKA  RAH++ GL IA+ N+D V++IIR S + +    +  +      
Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDRE----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+++Q++AIL++RL RLTGL R+ ++NE + L  +IK
Sbjct: 416 ---------------------FSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK ELL +KD+    RRT I     D++ ED I  ED+++T++ +
Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQM 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   Y+ Q+RGG+G + +  +++DFV +LF+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G A++N+L+L++GE+IT+++     E    N Y++  T+ G +++    +F
Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINV---EEFDPNYYLLMVTEKGLIKKTSNKEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G I +KL   D+++SV     + +I+L TK G+ +RF    +R   GRN++GV+
Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELR-DQGRNTMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D ++S  IV                                            
Sbjct: 691 SMNLDEDDTIVSSDIVGDG----------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTVSE GFGK T   ++R  NR GKGI    +S+  + G + A  
Sbjct: 710 ------------NYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            VN +D I+L++D G +IR+ +++I + SR T GV + +   D +VV++ +
Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLN-DSKVVAIAK 805



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 100/237 (42%), Gaps = 21/237 (8%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ D ++          I+ ++K  + V              S  +  + L +  
Sbjct: 385 LFIALDNIDRVI---------KIIRSSKDDKEVIEKFDREFSLTQIQSQAILDMRLKRLT 435

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND------SSVEGNISE 787
            +    +    D   ++   + + +     L+     E+  +K+       + ++ + S+
Sbjct: 436 GLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESD 495

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              +++  +E  I+T+++ G+ KR     ++   R G+GI A    + + +  L   F  
Sbjct: 496 IDIEDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKEL---FVT 552

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
           + +D+++  ++KG + R+   E+  A R  KG   V + +  K E++ SV  + E +
Sbjct: 553 STHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFD 609



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 68/160 (42%), Gaps = 7/160 (4%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--KLKEQFILTVSEK 806
           ++ I  +  M   +R+  G  +         +      ++  +EL        +L  + K
Sbjct: 505 EDVIITLTQMGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNK 564

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLI 863
           G   R  +++   + R+ KG    ++  +++   + +V  V + D    +++V++KG + 
Sbjct: 565 GKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPNYYLLMVTEKGLIK 624

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    E +   +   G++      D++++SV  +R  E +
Sbjct: 625 KTSNKEFKNIRQN--GLIGIKLRDDDKLISVHLVRGDEEI 662


>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
 gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 872

 Score =  729 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/917 (38%), Positives = 537/917 (58%), Gaps = 71/917 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  +     E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I NP+++   LM II+GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  Y +G+GSI +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IA++V +K+
Sbjct: 241 IKETYLSGKGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  IAD+RDESDR G R+V+EL+R +   V+LN L++ T LQ+ FS NM+AL   +P   
Sbjct: 301 LEGIADIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVIL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L+ F+ FR E + +RTKYLL KA  R H+L+GL +A+  LDE++ +IR + +  T
Sbjct: 361 SLRKMLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+ +L +                             L+++Q+ AIL+++L RLT L  D 
Sbjct: 421 AKNKLQE--------------------------LHGLTDIQSDAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL+ + R+  I K EL  +K++ +T RRT I++    +ED D 
Sbjct: 455 IRLEHEDLVKKIIDLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G++G   + E+ V      + H S+L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++      S  +  Y++  T
Sbjct: 575 SDRGISYALPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLSVS---SFDDENYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 RGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLND 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR++ GV+ ++L  GD ++SM ++    AD+ ++    +  S            
Sbjct: 692 SELRPLGRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELQSESSESEG----- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                      ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 747 --------------------------PWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIK 780

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             K  +   LV +  +   ++++LVS++G ++R   ++I   SRA  GV I      +++
Sbjct: 781 FRKDGD--ELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKL 838

Query: 892 VSVERIRESEIVDEAES 908
             V  +   +I D+ E+
Sbjct: 839 SEVVLVPPEQINDDDEN 855


>gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
 gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
          Length = 843

 Score =  729 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/895 (40%), Positives = 549/895 (61%), Gaps = 86/895 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K
Sbjct: 2   SNINNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R  LI G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K ++ LL+D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMAKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNP++    LME I+GPDFPTG +I G  GIK+AY TGRG + +RG 
Sbjct: 182 NLGEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGIIDGDKGIKDAYMTGRGKVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NKA ++EKIAELV++K+IV I+DLRDESDR G RVVIE
Sbjct: 242 IEIEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   ++ILN+LY+YT LQS F + M+AL    P    L  I++ ++  R EV+ RRT
Sbjct: 302 LKKGEEPELILNKLYKYTDLQSTFGIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KA  RAH+L G  IA+ N+D ++ ++R + +   AR +L+++             
Sbjct: 362 QFNLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q RAIL+++L RLTGL RD +  E   +   I E  +IL++
Sbjct: 409 -------------YGFTDIQARAILDMKLQRLTGLERDKVEAEYQEIEKYISELREILAN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K EL  +KD+ D  RRT I +   ++  ED I  E++++T ++ GYVKR+ L
Sbjct: 456 DSKIYEIMKTELQELKDKYDDDRRTVIEKERKEINPEDLIKDEEVILTFTNKGYVKRMEL 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGG+G +     ++DFV ++       +++ F++ G VY  KV+ +P  S Q+
Sbjct: 516 SKYKAQKRGGRGVASQNTVEDDFVENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + NI++L   E+I  I+   +     N   V+F TK G V++  LS+F  IN SG 
Sbjct: 576 RGRLIGNIINLKTDEKIRAIIKTRD---FSNENEVIFVTKDGTVKKTNLSEFKNINSSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A+KL   D+I+ V          +L+ T+ G  +RF    +R   GR+++GV+G++L +
Sbjct: 633 KAIKLKENDDIIYVGLIEDIVNEQLLIATQAGYSIRFSCEELRA-TGRDTMGVKGLTLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++                                                  
Sbjct: 692 GDTVVSALLIKD------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
              ++   ILT++E G+GKRT   ++ + +R GKG+     S   + G++V+V  V+ ++
Sbjct: 704 ---IENSSILTITENGYGKRTKIDEYPLQSRIGKGVINLRCSA--KTGSVVSVLSVSTDE 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR+ V++I +  RAT+GV+I     KDE+VVS+ R++  E  DE
Sbjct: 759 ELMAITSSGVVIRIAVDDIVLYGRATQGVIIMKVHGKDEKVVSITRVKSEENEDE 813


>gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4]
 gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4]
          Length = 872

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/891 (39%), Positives = 542/891 (60%), Gaps = 67/891 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V+I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++G   +K Y
Sbjct: 3   DQDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY  L RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K +  +L D+ KDTVDF+ N+D + +EP VL +R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVD  +A IDN DI++  +++ I+ PDFPTG +I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIYGYAGVKEAFETGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE  +  RE+IV+ EIPYQVNK  +++ +  LV +K++  IA + DESDR+G R+V
Sbjct: 243 SKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +++KR A++ V+LN+L++YT+LQS FSVN +AL   +P    +  ++  FV  R EVV+R
Sbjct: 303 VDVKRDANSSVVLNKLFKYTALQSSFSVNNIALVHGRPRMLNVKDLIHYFVEHRHEVVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L +A  RAH+L G  I + NLDE ++IIR S  P+ AR  LM+R           
Sbjct: 363 RTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTG+ +D +R E   +   I    +IL
Sbjct: 412 ---------------FGLSEIQSRAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                 + IIK ELL VK +    RRT+IV    +   ED    ++M++T+SHLGY+KR 
Sbjct: 457 EKIELRMQIIKDELLEVKAKYGDARRTQIVYSSEEFNPEDFYADDEMIITISHLGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS +RAQ RGG G  G   RDEDF+  ++  S H ++LFF+S G  Y  KV+ +P GS 
Sbjct: 517 ALSEFRAQGRGGVGSKGSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSK 576

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  +++   +      D     + Y++FATK+G +++  L  + +  
Sbjct: 577 NSKGRAIQNMLNIDNDDKVNAFIRVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V      +++L+  + G+ +RF  S +R    R + GVRG++L
Sbjct: 637 QNGVNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREMG-RTATGVRGMTL 695

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+++ M  V   D   +E I  +      +R +  + ++  +L  D +       
Sbjct: 696 DEDGEDELVGMICVNKED---NENIMVVSQQGYGKRTLLDEVDDEGNLMLDEN------- 745

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                G+      +R++NR GKG++  +++  ++ G LV +  V
Sbjct: 746 ---------------------GETIPV--YRVTNRGGKGVKTMNIT--DKTGKLVTIKNV 780

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V + R+  RAT+GV + +  K ++ + SV ++
Sbjct: 781 TDENDLMIINKSGITIRLKVADFRVMGRATQGVRLINLEKRNDEIASVCKV 831



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 103/263 (39%), Gaps = 30/263 (11%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
               +   ++  +  G +K+  L  Y   R+   G + + +R++D V  + +   ++ VL
Sbjct: 607 PEYTKSHYLIFATKNGVIKKTSLEAYSRPRQ--NGVNAITIREDDQVIQVRLTDGNSEVL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +    ++      A G   + +    + E +  I    ED  +     ++ 
Sbjct: 665 MANRNGRAIRFHESKVREMGRTATGVRGMTLDEDGEDELVGMICVNKEDNEN-----IMV 719

Query: 651 ATKHGNVRRNKLSDFIQ------------------INRSGKIAMKLDSRDE---ILSVET 689
            ++ G  +R  L +                      NR GK    ++  D+   +++++ 
Sbjct: 720 VSQQGYGKRTLLDEVDDEGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKTGKLVTIKN 779

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
            T END+++  K G  +R  ++  RV   R + GVR I+L K  D++ S+  VL  + + 
Sbjct: 780 VTDENDLMIINKSGITIRLKVADFRVMG-RATQGVRLINLEKRNDEIASVCKVLSENEEE 838

Query: 749 DERICYMKHMSAQRRLISGDTEE 771
                 +  +     ++     +
Sbjct: 839 VVEETEVSAVPVTDAVVGETETD 861


>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
 gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
          Length = 878

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/890 (40%), Positives = 524/890 (58%), Gaps = 66/890 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 14  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE R
Sbjct: 74  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 133

Query: 135 LQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L+      LL+D+  +TVD+  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H
Sbjct: 134 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++ G +A+I+NP++    LM +I GPDFPTG  ILGRTGIK  Y +GRGS+ +RGV
Sbjct: 194 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 253

Query: 254 SHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + IE        DR+ +++T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR G R
Sbjct: 254 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 313

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR E +
Sbjct: 314 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 373

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L +R         
Sbjct: 374 ERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQER--------- 424

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+VQ  AIL+++L RLT L  D IR E   L ++I +  D
Sbjct: 425 -----------------HGLSDVQADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKD 467

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL  R R+ GII+ EL  ++D    PRRT I++    ++D D I  E  VV ++  GY+K
Sbjct: 468 ILGRRERVFGIIQDELGQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLK 527

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  
Sbjct: 528 RMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQC 587

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  ++ +L + + E IT+++   E     ++  ++  T+ G ++R +LS F  I 
Sbjct: 588 SRTAKGTPVVQLLPIPREEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIR 644

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728
            +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +   GR + GVR ++
Sbjct: 645 SNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDDELRPLGRTARGVRSMN 704

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++SM ++    AD              R   S + +       D S        
Sbjct: 705 LRDGDALVSMDVLPVELAD--------------RVAQSSEDDSGEDETGDVS-------- 742

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L  S  G GKR     FR+  R+G G+RA       E  ALV +  + 
Sbjct: 743 -------DGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTEADALVGLRVLG 793

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  + 
Sbjct: 794 AGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVVLVP 843



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 21/298 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            + + L   + +  I  + +       ++ +   + G      L D   I R  +I   L
Sbjct: 448 ADKIRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQ-----LRDRHAIPRRTEI---L 499

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D    +  ++    E  ++L T+ G   R P+S       R + G  G   ++G++ + +
Sbjct: 500 DLGGGLDDIDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTR-SQGEEAVKL 557

Query: 739 AIVLHADAD----YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            I  +         D  + Y        +                  E  I+        
Sbjct: 558 FIGCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLLAVSEF 617

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +  +L +++ GF KRT    F  SN    G+ A  + + +   AL  V      D ++
Sbjct: 618 NDDTDLLMLTQGGFIKRTRLSAF--SNIRSNGLIAIGLEEGD---ALTWVRLAVPGDSVL 672

Query: 855 LVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + S  G  I  R+  +E+R   R  +GV   +    + +VS++ +        A+S+E
Sbjct: 673 IGSRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSSE 730



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 32/250 (12%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R  ++  LL + + +    +  ++ ++  G++KR  LS +   R    G   + + + D 
Sbjct: 604 REEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIRS--NGLIAIGLEEGDA 658

Query: 577 VTDLFIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           +T + +     SVL  S  G    ++     L      ARG   +  ++L  G+ + ++ 
Sbjct: 659 LTWVRLAVPGDSVLIGSRAGMTIHFRLSDDELRPLGRTARG---VRSMNLRDGDALVSMD 715

Query: 635 PFP----------------EDESSW--NNLYVVFATKHGNVRRNKLSDFIQINRSG--KI 674
             P                EDE+    +  +V+ A+  G  +R  ++ F    R+G    
Sbjct: 716 VLPVELADRVAQSSEDDSGEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLR 775

Query: 675 AMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMK     D ++ +       ++LL ++ G  VR           R + GVR   L KGD
Sbjct: 776 AMKFRTEADALVGLRVLGAGEEVLLVSEKGVIVRTSA-DSIPQQSRAATGVRLQRLDKGD 834

Query: 734 QVISMAIVLH 743
           ++  + +V  
Sbjct: 835 RLSEVVLVPP 844


>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 865

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/918 (37%), Positives = 539/918 (58%), Gaps = 69/918 (7%)

Query: 1   MTEHIISSDE----EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M++ I+ SD     E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRI
Sbjct: 1   MSD-ILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRI 59

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GN
Sbjct: 60  LYAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGN 119

Query: 117 FGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           FGSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L
Sbjct: 120 FGSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVGMATNIP HNLGE+++G  ++I NP I+   L EII+GPDFPTG  ILGR 
Sbjct: 180 LNGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GI+  + TG+GSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK
Sbjct: 240 GIRETFKTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P  
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGEPTT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  
Sbjct: 360 LSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSI 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +AR +L                               LS +Q+ AIL+++L RLT L  D
Sbjct: 420 SAREKLQNE--------------------------HKLSSIQSDAILQMQLRRLTALEAD 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I+ E N L  +I     IL+S+ R+  II +EL  +  +  +PR+T I++    ++D D
Sbjct: 454 KIKEEHNELTRKINFYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDID 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L 
Sbjct: 514 LIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLL 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +S  ++ Y++  
Sbjct: 574 FSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFVDDRYLLML 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +K G  + F + 
Sbjct: 631 TKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLD 690

Query: 712 AIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              +   GR + GV+ ++L +GD ++SM ++     D   +I  +               
Sbjct: 691 INELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDL----------- 739

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           ++  +E      ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 740 ----------------DDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  + + ++++LV++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDH 841

Query: 891 VVSVERIRESEIVDEAES 908
           +  V  +   +I ++ ++
Sbjct: 842 LSEVVLVPREQIEEKDQN 859



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 25/259 (9%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +   D  V +  ++ ++  G++KR  LS +   R    G   + + D D +T +
Sbjct: 609 EEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRS--NGLIAINLEDGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINIL---------------- 622
            +     SVL  S  G    ++  +  L      ARG   +N+                 
Sbjct: 667 RLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLV 726

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-- 679
             L + E +T  +    +E+S +  +V+ A+  G  +R  ++ F    R+G     +   
Sbjct: 727 DQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFR 786

Query: 680 -SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D+++ ++   +  ++LL T+ G  VR           R + GV+   L  GD +  +
Sbjct: 787 IKDDQLVCLKVLGEGEELLLVTEKGVIVRTNA-DKISQQSRAATGVKLQRLDDGDHLSEV 845

Query: 739 AIVLHADADYDERICYMKH 757
            +V     +  ++   ++ 
Sbjct: 846 VLVPREQIEEKDQNGSVEQ 864


>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 809

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/891 (39%), Positives = 554/891 (62%), Gaps = 86/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +E E GI  V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ +
Sbjct: 1   MTDTKEFENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD+++R  L++GQGNFG++DGD  
Sbjct: 61  VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ KDTV+F PN+D   +EP +L +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HN+ EV+DG V  ID+ DI +  L E+I+GPDFPTGA+I+GR GI  AY TGR
Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIMGRDGINKAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I +    REQI++TE+PYQVNK+A++ KIAEL ++K I  I+ + D S++
Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+LK+ A+A+V+LN+LY+ T LQ  + +  +AL   +P+   L  +++ +V  +
Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RRT++ LNKA  RAH++ GL IA+ N+D V++IIR S + +    +  +      
Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDRE----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+++Q++AIL++RL RLTGL R+ ++NE + L  +IK
Sbjct: 416 ---------------------FSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK ELL +KD+    RRT I     D++ ED I  ED+++T++  
Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQF 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   Y+ Q+RGG+G + +  +++DFV +LF+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G A++N+L+L++GE+IT+++     E    + Y++  T+ G +++    +F
Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINV---EEFDPDHYLLMVTEKGLIKKTSNKEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G I +KL   D+++SV     + +I+L TK G+ +RF    +R   GRN++GV+
Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELR-DQGRNTMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D ++S  IV                                            
Sbjct: 691 SMNLDEDDTIVSSDIVGDG----------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTVSE GFGK T   ++R  NR GKGI    +S+  + G + A  
Sbjct: 710 ------------NYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            VN +D I+L++D G +IR+ +++I + SR T GV + +   D ++V++ +
Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLN-DSKIVAIAK 805



 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 100/239 (41%), Gaps = 21/239 (8%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ D ++          I+ ++K  + V              S  +  + L +  
Sbjct: 385 LFIALDNIDRVI---------KIIRSSKDDKEVIEKFDREFSLTQIQSQAILDMRLKRLT 435

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND------SSVEGNISE 787
            +    +    D   ++   + + +     L+     E+  +K+       + ++ + S+
Sbjct: 436 GLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESD 495

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              +++  +E  I+T+++ G+ KR     ++   R G+GI A    + + +  L   F  
Sbjct: 496 IDIEDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKEL---FVT 552

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           + +D+++  ++KG + R+   E+  A R  KG   V + +  K E++ SV  + E +  
Sbjct: 553 STHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPD 611



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 67/160 (41%), Gaps = 7/160 (4%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--KLKEQFILTVSEK 806
           ++ I  +      +R+  G  +         +      ++  +EL        +L  + K
Sbjct: 505 EDVIITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNK 564

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND---NDQIILVSDKGTLI 863
           G   R  +++   + R+ KG    ++  +++   + +V  V +   +  +++V++KG + 
Sbjct: 565 GKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPDHYLLMVTEKGLIK 624

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    E +   +   G++      D++++SV  +R  E +
Sbjct: 625 KTSNKEFKNIRQN--GLIGIKLRDDDKLISVHLVRGDEEI 662


>gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
 gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
          Length = 985

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/973 (38%), Positives = 548/973 (56%), Gaps = 84/973 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DN +I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+D+++  I+ S NP  AR  L+   W A  +  +++
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423

Query: 433 LI------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D S   G       LS  Q  AILELRL RLTGL +D +  E + 
Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +IK+EL+ V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y AQRRGG+G+S   M+++DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  +RG+ +IN+L L+  E IT I+P  +   +        A     V+ 
Sbjct: 604 RLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVID---APKKFTERLAAFKNFVKT 660

Query: 660 NKLSDFIQINRS-------GKIAMKLDSRDEILS-------------------------- 686
           N +        S         +AM  D+ DE+ +                          
Sbjct: 661 NTVKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEF 720

Query: 687 ---VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI--- 740
               E+  +   + + T  G   R     +  F+   S G+R I L + D +I + I   
Sbjct: 721 AQQAESVRKNYYVFMATASGTVKRV---ELEQFSNVRSNGLRAIELNEEDTLIGVTITDG 777

Query: 741 -------------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN--- 784
                        +  A+ D        K +   R  ++   E+      DS  E +   
Sbjct: 778 EQQIMLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDS 837

Query: 785 --ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G LV
Sbjct: 838 NVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GELV 895

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +++  +++L+SD GTL+R    E+    R  +GV +    + E +V V  I   E 
Sbjct: 896 GAVAIDETKELMLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSIEAVEE 955

Query: 903 V-----DEAESTE 910
                 +  ESTE
Sbjct: 956 DEVEAFETVESTE 968


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/827 (42%), Positives = 524/827 (63%), Gaps = 34/827 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+    I  + I  EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +  +
Sbjct: 3   DEKNTSRILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R+ L++G GNFGSVDGD PAA 
Sbjct: 63  KPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  LL D+ K+TVDF PN+D S +EP+VL AR+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D  V +ID PD D++ LM  ++GPDFPTGA+I+G   IK AY TGRG I
Sbjct: 183 SIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIMGTESIKEAYRTGRGKI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE+    ++QIVVTEIPYQVNKA ++E+IAELV++K+I  I+DLRDES+R G 
Sbjct: 243 KVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR  +A++ILN LY+++ ++   SV M+AL   +P+   L  +L  ++  +++V
Sbjct: 303 RIVIELKRDVNANIILNNLYKHSQMEETISVIMIALVNGEPKCLNLKEVLHYYIEHQKDV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA  RAH+L GL IA+ N+D V+  IR S     A+ +L++R        
Sbjct: 363 VTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q +AILE+RL RLTGL R+ I  E + L  +I E  
Sbjct: 415 ------------------FGLTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S   LLG+IK E++ +K++    RRT I     +++  D I  E++ +T++H GY+
Sbjct: 457 EILASEEVLLGVIKDEIIEIKNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   YR+Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V++   + +P 
Sbjct: 517 KRLPADTYRSQKRGGRGISALTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L  GE+I T++     E    N Y++ ATK G V++ K+SDF  I
Sbjct: 577 GKRQAKGTAIVNLLQLGPGEKIATLIDVDGKEE---NKYLLIATKKGMVKKTKISDFKNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG I++ L   DE++ V+    E D++L T+ G  +RF    +R    R ++GV+GI+
Sbjct: 634 NKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTRNGMSIRFSEKDVRGMG-RTAMGVKGIT 692

Query: 729 LAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L +GD V+SM++     D        + K    +         +     N S   G+I  
Sbjct: 693 LGEGDTVVSMSLASEGTDMLVVSENGFGKRTDLEEYRSQIRAGKGIKTYNISEKTGSI-- 750

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               E+  ++  ++ ++  G   R    +  I  R   G++  +V +
Sbjct: 751 -VGAEMVAEDDEMMIINSDGVLIRIKVNEISIFGRVTSGVKLMNVDE 796


>gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
 gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
          Length = 943

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/903 (37%), Positives = 490/903 (54%), Gaps = 99/903 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE E   IT + +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M   G  
Sbjct: 61  PLDESEVDRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYR 120

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ + KCA++ GEVMG YHPHG++AIYDA+ R+ Q WS+R  LI GQGNFGS   D  A
Sbjct: 121 PDRSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAA 180

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTEC++   A  L+ D+ +DTVD + NYD +  EP VL AR+PN+LVNG  GIAVGM
Sbjct: 181 APRYTECKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGM 240

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNL EV D    ++ N +     L+E     I+GPDFP+GA I+G +GI++AY 
Sbjct: 241 ATNIPPHNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSGIEDAYR 300

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI  R V   E+    R  +VVTE+PYQVN   +  KIAE+V+  +I  IAD+ DE
Sbjct: 301 TGRGSITQRAVVSTEEI-NGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDE 359

Query: 303 SD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +  R G R+VI LKR A A V+LN LY++T LQ  FS NM+AL    P   ++   ++ +
Sbjct: 360 TSGRTGQRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREW 419

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              + +V+VRRTK+ L KA ++ H+  G   A+  LDEV+ +IR SP+ + AR  LM   
Sbjct: 420 TKHQIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLMD-- 477

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + + E+Q  AIL ++L RL  L R  I  E + L 
Sbjct: 478 ------------------------LLEIDEIQANAILAMQLRRLAALERQKIIEEHDRLQ 513

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+E   IL+   R   I+ +EL  + D     RRT I+    DME ED I  EDMVVT
Sbjct: 514 ALIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMVVT 573

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GYVKR     YRAQ+RGGKG  G  +R++D V   F  +TH  +LFF++ G VY+ 
Sbjct: 574 ITRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRA 633

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     A+G+ + N+++    E I +++     E   +  ++V AT+ G V++  
Sbjct: 634 KGYELPEAPRDAKGQHVANLMAFQPDENIASVLAIDSYE---DAQHLVLATESGLVKKTP 690

Query: 662 LSDFIQINRSGKIAMKLDS--------RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +  F      G IA+ L           D ++S      +++ILL ++ GQ VRFP    
Sbjct: 691 MPAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDG 750

Query: 714 RVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            +    R + GV G+     D +++M ++                               
Sbjct: 751 TLRPTGRATSGVTGMKFRHQDTLLAMDVIRP----------------------------- 781

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   + F++TV++ GF KRT+  ++R+  R G GIR   +
Sbjct: 782 ------------------------DSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKL 817

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
              ++ G LV    V + D++++V ++G ++R  V E+    R T GVV     K +R++
Sbjct: 818 --PDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRIL 875

Query: 893 SVE 895
            V 
Sbjct: 876 LVT 878



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 19/286 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG------KGRSGVVMRDED 575
           E +  +   D       +V  +  G VK+ P+  + + R GG      +   G      D
Sbjct: 660 ENIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEGPQPD 719

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            V     V++   +L  S  G   +       +  P  R  + +  +     + +  +  
Sbjct: 720 RVISARAVNSDDEILLVSRNGQSVRFPADDGTL-RPTGRATSGVTGMKFRHQDTLLAMDV 778

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQ 692
              D       +V+  T  G  +R  + ++    R G    +A   D R  ++      +
Sbjct: 779 IRPD------SFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKLPDDRGHLVGAAVVEE 832

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            +++L+  + G+ VR  ++ +     R ++GV      KGD+++   +    +++ DE  
Sbjct: 833 TDELLVVMERGRVVRSKVAEVPAKG-RTTMGVVFAKPDKGDRIL--LVTTGQESEVDEEE 889

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                +       S D  E ++      VEG        E      
Sbjct: 890 AEAPEIIDADPAGSEDAVENSADAAPEGVEGEDDVLGSDESDQSPT 935


>gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064]
          Length = 807

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/858 (41%), Positives = 519/858 (60%), Gaps = 86/858 (10%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG+ A+Y  + RMAQ
Sbjct: 1   PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+S R +L++G GNFGSVDGD  AA RYTE R+ K +  LL D+ KDT+D+  NYDGS +
Sbjct: 61  DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EPV+L AR+PN+LVNG  GIAVGMATNIPTH+LGEV+DG +A+  +PDI +  LME I G
Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPT  +I+GR+GI+ AY +GRGSI +RG   IE+    +E IV+TEIPYQVNKA ++E
Sbjct: 181 PDFPTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVE 240

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           +IAEL REK+I  I  L DESDR G R+VIE++R  SA VI+N L++ T+LQ+ F +NM+
Sbjct: 241 RIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINML 300

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL IA+ N+D +++
Sbjct: 301 ALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIK 360

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S   + A+  LM +                            LS+ Q +AIL++RL
Sbjct: 361 LIRGSKTSDVAKEGLMTQ--------------------------FNLSDKQAQAILDMRL 394

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K +    RRT I+ 
Sbjct: 395 QRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILA 454

Query: 523 GLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           G L  +EDED I  E++ +T++  GY+KR+PLS YR+QRRGG+G  G+   ++DFV  L 
Sbjct: 455 GDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLV 514

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             STH ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  ++   E   
Sbjct: 515 ATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSE--- 571

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             ++ Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+      ++++ TK
Sbjct: 572 FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATK 631

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ + FP   IRV   R + GVRGI L + D+VI M ++   +                
Sbjct: 632 HGQSIYFPEENIRVMG-RTAAGVRGIRLREDDEVIGMEVLEDDEK--------------- 675

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +L V+EKG+GK+T +  + + N
Sbjct: 676 --------------------------------------VLVVTEKGYGKQTPASQYPLRN 697

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  GV 
Sbjct: 698 RGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVK 755

Query: 882 IFSTAKDERVVSVERIRE 899
           +    +DE+V +V ++ +
Sbjct: 756 LIRLDEDEKVATVAKVPK 773



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 558 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 615

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 616 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 672

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 673 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 726

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 727 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 785

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 786 ETLITQVPDESFEDAPGSDIEE 807


>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 813

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/896 (40%), Positives = 553/896 (61%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  K I  V +  +M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EESYKNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A + NP+I +  L EII+GPDFPTGA ILG++GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQILGKSGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A+A+++LN LY+ T L++ F +  +AL    P+   L  ++K ++  ++ VV
Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYIEHQKNVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   +R         
Sbjct: 363 RRRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDLQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +L+G+I++E+L +K++    RRT+IV    + + E+ I +ED++++++H GY+K
Sbjct: 457 ILNDEEKLIGVIEEEILEIKEKFADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY    + +P  
Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG+A+INI+SL   E+IT IM   E     +N  +VF T+ G +++     F  I 
Sbjct: 577 SRQSRGQAIINIISLATNEKITDIMELSE---LSDNSQLVFQTEKGKIKKTDAQLFTNIQ 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L+  D ++S+       DI++TT+ G  ++F  S IR    RN+ GVR I L
Sbjct: 634 RNGIIAISLEDDDRLVSIRQIDHPCDIIVTTQKGMAIKFASSDIRSMG-RNARGVRAIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +K D V+SM IV                                                
Sbjct: 693 SKDDNVVSMNIVED---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E ++L V+  GFGK+TS  +F   NR GKG+R   +++  + G +VA  P N 
Sbjct: 707 -------EVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTGNVVATLPANL 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +D I++VS KG +IR+   +I    R T GV + +    ++ +VSV +  E    D
Sbjct: 758 DDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLENTEDFIVSVTKYYEENSED 813


>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
 gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
          Length = 863

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/913 (37%), Positives = 534/913 (58%), Gaps = 67/913 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ I S +    E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDIIDSGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I+NP I+   L E+I+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  + TGRGSI +RGV++IE+       +++ +++TE+P+Q NKA ++E+IA+LV E++
Sbjct: 241 IRETFKTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +
Sbjct: 361 SLRRMLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTIS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS  Q  AIL+++L RLT L  D 
Sbjct: 421 AREKLQT--------------------------DHELSSTQAEAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ E + L  +I +   IL+S+ R+  II +EL  + +   +PR+T I++    ++D D 
Sbjct: 455 IKAEHDELTKKINQYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  +  VV ++  GY+KR+P++ + +  RG +G++G   + +D V      + H ++L F
Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +S  N+ Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFDNDCYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ ++ G  + F +  
Sbjct: 632 KSGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSRTGIAIHFRLDI 691

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GV+ ++L KGD ++SM ++     D   +I  +                
Sbjct: 692 NELRPLGRTARGVKSMNLKKGDNLVSMDVLTSDLVDKLAKIDDLNKEI------------ 739

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                          EE  +       ++L  S  G GKR     FR+  R+G G+RA  
Sbjct: 740 ---------------EENIEVNSSDGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIK 784

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +++  LV +  + + ++++ V++KG ++R   ++I   SRA  GV +    + + +
Sbjct: 785 FRIQDDV--LVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDEGDHL 842

Query: 892 VSVERIRESEIVD 904
             V  +   +I +
Sbjct: 843 SEVVLVPREQIEE 855


>gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
 gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
          Length = 865

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/902 (40%), Positives = 541/902 (59%), Gaps = 95/902 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IY+AL ++AQ+W+ R  L++G GNFGSVDGD  AA RYTE RL K
Sbjct: 72  VGDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL E
Sbjct: 132 ISMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 198 VVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +   + +IDN      + D+D LM+I++GPDFPTGA ILGR GI +AY TGRG I +R 
Sbjct: 192 TIYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRA 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++ IE  +  + +I+VTE+PY VNK+ +++ + +LV+ KRI  I D+RDES R+G RVVI
Sbjct: 252 ITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++  +A+VILNQL+++T LQ  F   M+AL    P+   L  +L  ++  +E+VV RR
Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNLKDMLTYYLKHQEDVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LNKA +RAH+L G  IA+ N+DEV+ IIR S N   A+ +L++R            
Sbjct: 372 TRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------ 419

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AI+++RL  LTGL R+ I NE N L  +I E  +IL+
Sbjct: 420 --------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELKAKIAEYKEILA 465

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++LLG+IK EL ++ D+    RRT I     D+ DE+ I RE++V++++ LGY+KR+P
Sbjct: 466 DENKLLGVIKTELTAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMP 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              ++ Q RGGKG  G+ + D D + ++F+ +TH  ++FF+++G VY+ K + +P     
Sbjct: 526 KDTFKVQNRGGKGIKGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRN 585

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG A++N+L L   E++T I+P     + ++  Y++ ATK+G V++ K+  F  I ++G
Sbjct: 586 ARGVAIVNLLQLLPNEKVTAIIPI----TGFDKKYLMMATKNGIVKKTKIEAFENIRKTG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L+  DE++ V+  + ENDI L T  G C+RF    +R   GR S+GVRGI   K 
Sbjct: 642 LAAITLNDGDELIEVKATSGENDIFLVTTKGMCIRFNEDCVR-DTGRTSMGVRGIRCDKN 700

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                                                 E    +
Sbjct: 701 -----------------------------------------------------DEVIAMQ 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L ++   IL V+  G GKRT   +F    R GKG++   +++  + G +V+   V ++  
Sbjct: 708 LDVQGDEILFVTANGMGKRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHD 765

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEA-ES 908
           I++++++G +IR+  ++I +  R T GV + +      V SV ++    E E VDE  E 
Sbjct: 766 IMMMTNEGIMIRMHCSDITVIGRITSGVKLMNVGSGAFVASVAKLARTEEEENVDEDGEE 825

Query: 909 TE 910
           +E
Sbjct: 826 SE 827


>gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 815

 Score =  727 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 545/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 865

 Score =  727 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/900 (38%), Positives = 526/900 (58%), Gaps = 90/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I   ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 5   ENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYT
Sbjct: 65  RKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  L++DL K+TV+  PNYD + +EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++   + V+ NP + +D +M ++  PDFPTG +I G  GIK A+ TGRG +++R
Sbjct: 185 PHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLLLR 244

Query: 252 GVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            V  +E  + + D+++++V EIPY VNK+ ++E+IA+L+  K I  IADLRDESD+ G R
Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IELKRG   +VILNQL++Y+ LQ  F  NM+AL+   P+   +  ++ A+V  R EVV
Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIEVV 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L G   A+ ++DEVVR+IR S N E AR EL+QR         
Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR--------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  A+L+L+L +LTGL  + I  E   L  +I     
Sbjct: 416 -----------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRA 458

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S + +  II++ELL ++    + R+T+I+    ++  ED I  E +++T+S   Y+K
Sbjct: 459 VLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVIITISEDDYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+  +R QRRGG+G +G+ ++ +ED +  L++ STH  +L F++LG  Y  KVW++P 
Sbjct: 519 RMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPE 578

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +++GK LIN+L  +   E+I T++     E      Y++ ATK G V++ +LS+F  
Sbjct: 579 TGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQ---AYILMATKKGIVKKTELSEFSH 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R G  A+ +   DE+++    +    I+L T  G  VRF    +R    R + GV+G+
Sbjct: 636 PRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPMG-RTARGVKGV 694

Query: 728 SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L    D V+    V   +                                         
Sbjct: 695 TLKDDTDYVVGCEAVNGTE----------------------------------------- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL V E GFGKR++  DFR +NR G G+R+   S+ N  G +V    
Sbjct: 714 ------------TILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERN--GNVVGALC 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V D D ++++S +G  +R+ + ++R+  R T+GV + +  + + +V+++++  S+ VD A
Sbjct: 760 VTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDVDNA 819


>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
 gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
          Length = 839

 Score =  727 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/903 (38%), Positives = 526/903 (58%), Gaps = 91/903 (10%)

Query: 6   ISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++S+E ++      +  V+I +EM++SY+ YA++VI+GRAIPD+RDGLKPVHRR LF M 
Sbjct: 1   MTSEESQQPLFVPKVNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMW 60

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG   +K Y K AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R++L++GQGNFGSVD
Sbjct: 61  EMGNTHDKPYKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVD 120

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE RL++ A  LL DL K+TV+F PN+D S QEP VL A+ PN+L+NG  G
Sbjct: 121 GDAPAAMRYTEVRLKREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDG 180

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG+AT +P HNLGEV D     +++PD  +  LM+I+ GPDFPTG +I+G  GI+NAY
Sbjct: 181 IAVGIATKMPPHNLGEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGTDGIQNAY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            +G+G + +RGV+ I   SG R QI++TEIPYQVNKA ++E IAELV+EKRI  I+DLRD
Sbjct: 241 LSGQGKLTVRGVAEI-DESGKRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRD 299

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESD+ G R+VI+L++ A   +ILN LY++T+L+S F +   A+   +P+   LI +++ F
Sbjct: 300 ESDKDGMRIVIDLRKDARPQLILNHLYKHTALESTFGIINYAIVDRQPKILGLIPLIEQF 359

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  R  V+ RR+++   KA +R H+L GL  A+ N+D V+  IR +   + A+  L+ + 
Sbjct: 360 VRHRITVITRRSEFDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAK- 418

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L E Q  AIL+++L RL  L +  + +E   L 
Sbjct: 419 -------------------------FSLDEAQAGAILQMQLRRLAALEKQKLIDEREQLE 453

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI++ +++LSS   +   I +EL  ++++    RRT+I   L ++  ED I  + ++V 
Sbjct: 454 AEIRKLIELLSSEDNIRAEISRELQELREKYADKRRTQITGDLQEIVREDLIPNKQVLVC 513

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++H  YVK + +  YR Q RGG+G  G+ ++D D+V  +F+ +TH  +L F+S G  Y  
Sbjct: 514 LTHQNYVKHMDVDAYRVQGRGGRGVMGISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWL 573

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P GS Q++GKA++N+L L   ER+T ++P  E  S   + + +F T+ G + +  
Sbjct: 574 RVFDIPEGSRQSKGKAIVNLLDLRSEERVTAVIPVQEFSS---DRFFLFLTERGMIIKIP 630

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             +F +   +G  A+ L   D ++ V       +I++TTK GQ +RF          RN+
Sbjct: 631 QDEFSRPRSTGVNAISLREGDNLVHVMVSDGSQEIIITTKYGQSLRFHE-EQIPLRHRNA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +GV G+ +   D V SM ++                                        
Sbjct: 690 LGVIGMRMKDDDIVTSMTVI---------------------------------------- 709

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         + + +LT++  G+GKRT+  ++R   R   G+R   +        +
Sbjct: 710 -------------EEGKHLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLK---RNDGI 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  F     ++IIL+S +G +IR  V +I I  R+T+GV I   A  +RVV V  +   E
Sbjct: 754 VTAFSAGPEEEIILMSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEE 813

Query: 902 IVD 904
             D
Sbjct: 814 QKD 816



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 98/253 (38%), Gaps = 14/253 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        +   + ++  G + ++P   +   R    G + + +R+ D +  +
Sbjct: 599 EERVTAVIPVQEFSSDRFFLFLTERGMIIKIPQDEFSRPRST--GVNAISLREGDNLVHV 656

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            +      ++  +  G   +    ++P+    A G   +  + +   + +T++    E  
Sbjct: 657 MVSDGSQEIIITTKYGQSLRFHEEQIPLRHRNALG---VIGMRMKDDDIVTSMTVIEE-- 711

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILL 698
                 +++  T  G  +R    ++    R   G   +KL   D I++  +   E +I+L
Sbjct: 712 ----GKHLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLKRNDGIVTAFSAGPEEEIIL 767

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  +R  +       GR++ GVR + LA GD+V+ +  +   +            +
Sbjct: 768 MSAEGIVIRTSV-EKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEEQKDISDDIPQAEI 826

Query: 759 SAQRRLISGDTEE 771
             +    +G ++E
Sbjct: 827 IDEGPDENGSSDE 839


>gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 837

 Score =  727 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/887 (40%), Positives = 543/887 (61%), Gaps = 86/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K
Sbjct: 2   SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL++G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + ++ L+DD+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDNP++    LME I+GPDFPTG +I G+ GI++AY TGRG + +RG 
Sbjct: 182 NLGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NKA ++E+IA+LV++KR+  I DLRDESDR G RVVIE
Sbjct: 242 VEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   ++ILN+LY+YT LQ+ F + M+AL    P+   L  IL+ ++  R EVV RRT
Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNAPKVLNLKEILQEYLKHRFEVVTRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L+KA  RAH+L G  IA+ N+D ++ IIR S +   AR  L+++             
Sbjct: 362 KFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+VQ RAIL+++L RLTGL R  I  E   +   I E  +ILS 
Sbjct: 409 -------------YAFSDVQARAILDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  IIK+ELL +K++ +  RRT I    +++  ED I  E++++T+++ GYVKR+ +
Sbjct: 456 DSKIYEIIKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEV 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG +     ++DFV  +   S   +++ F++ G V+  KV+ +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK + NI+ + + E+I  ++   +      +  VVF TK G +++  L +F  IN SG 
Sbjct: 576 RGKLMSNIIRIREDEKIRAVIKTRD---FSKDNEVVFVTKEGLIKKTNLDEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A+KL   D+I+ V    + +   + + TK G  +RF    +R   GR+++GV+ I+L  
Sbjct: 633 KAIKLKEDDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRP 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD ++S  ++   D                                              
Sbjct: 692 GDSIVSALLIKDEDGS-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILTV+E G+GKRT   ++ +  RSGKG+     +   + GA+V+V PV + +
Sbjct: 708 --------ILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNA--KTGAVVSVLPVTEGE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++ ++  G +IR+P++ I +  RAT+GV+I      E+VVS+ R++
Sbjct: 758 ELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVQ 804


>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 874

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 536/902 (59%), Gaps = 97/902 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E   I  V I DEM+N Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ +  +K
Sbjct: 3   NTEFDKIIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K ARI G+ MGKYHPHG+A+IYDA+ R+AQ+++ R  L++G GNFG+VDGD  AA R
Sbjct: 63  QYRKSARIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K   ++L D+ K+TVDFRPN+D S +EP VL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           IP HN+GEV+   + +IDN           + + + LMEI+ GPDFPTG  ILGR GI+ 
Sbjct: 183 IPPHNMGEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQILGRYGIEQ 242

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G + IR  + IE+ S  +  I++TEIPYQVNK+ ++EKIAELV+ K++  I  +
Sbjct: 243 AYRTGKGKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGI 302

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIEL+R  +A++ILNQLY+++ LQ  FS+NM+AL   +P  F L  +L+
Sbjct: 303 RDESDRDGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPHVFNLKEMLE 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA--VANLDEVVRIIRFSPNPETARREL 417
           A++  +++V+ RRT++ L+KA+ RAH++ G  I      +D V+ +IR S     A+ +L
Sbjct: 363 AYLDHQKQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKL 422

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +++                          + LSE+Q +AI+++RL  LTGL  D +  E 
Sbjct: 423 IEK--------------------------IGLSEIQAQAIMDMRLRVLTGLEHDKLTQEF 456

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           N L  +I     +L    +LL +IK+EL+ V+++   PRR+ +     +++ ED I  E+
Sbjct: 457 NELXDKIAYLKSLLEHEDQLLKVIKEELIVVREKFTDPRRSELSLLDDEIDIEDLIDEEE 516

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT++H GY+KR PL  Y+ Q+RGG+G  GV   +EDF+  LF  S    ++FF++ G 
Sbjct: 517 VVVTITHFGYIKRXPLVTYKEQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGR 576

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            YK K +++P  S  ARG A++N+L LN  E+I+ + P  ++E   +  Y+   TK G +
Sbjct: 577 AYKIKAYKIPEASRTARGLAIVNLLHLNVDEKISAVFPVKQNE---HERYLTMITKKGLI 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  ++ F  I + G IA+ +   DE++ V   T ++ I++ TK G  + F    IR   
Sbjct: 634 KKTNITAFNNIKKGGIIALTMQDADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRP-T 692

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVR I+L+K D VIS  I    +                                
Sbjct: 693 GRTAKGVRAINLSKEDYVISATIPKEGEQ------------------------------- 721

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 IL  ++ G GKRT   +F+   R GKG+    V   ++
Sbjct: 722 ----------------------ILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVD--DK 757

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA+  V+D++ +++++ +G +IR+ V++I    R  KGV + +      VV +E++
Sbjct: 758 TGDVVAITSVSDSNGLLMITSEGVIIRIKVSQISSLGRYAKGVKLINLTDGIHVVCMEKV 817

Query: 898 RE 899
            E
Sbjct: 818 AE 819


>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 875

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/914 (38%), Positives = 539/914 (58%), Gaps = 71/914 (7%)

Query: 1   MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M +    +    +E E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 4   MADPTEPTGGVPDELEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 63

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 64  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 123

Query: 118 GSVDGDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GS+D DPPAA RYTE RL+       L+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 124 GSIDNDPPAAMRYTESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLL 183

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE++DG +A+I NPD++   +M+II GPDFPTG  ILGR+G
Sbjct: 184 NGSSGIAVGMATNIPPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQILGRSG 243

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y +GRGS+ +RGV+ IE        DR+ I++T++PYQ NKAA++E+IA +V +K+
Sbjct: 244 IRETYLSGRGSVTMRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKK 303

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R +   V+LN L++ T LQS FS NM+AL   +P   
Sbjct: 304 LEGISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPITL 363

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L+ +L  F+ FR   + +RTKYLL KA +R H+L+GL +A+  LDE++ +IR + +   
Sbjct: 364 SLLRMLNVFLDFRVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSV 423

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+++L +                             L++VQ  AIL+++L RLT L  D 
Sbjct: 424 AKKQLQE--------------------------IHGLTDVQADAILQMQLRRLTALESDK 457

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L ++I +  DILS++SR+  IIK EL+S+K++    RRT I++    +ED D 
Sbjct: 458 IRLEHEDLLVKISDFKDILSNKSRVYEIIKTELISIKEKFPQVRRTEILDLGSGLEDIDL 517

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G+SG   + E+ V      + H ++L F
Sbjct: 518 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLF 577

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++      S  ++ Y++  T
Sbjct: 578 SVRGVSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSLISVS---SFDDDNYLLMLT 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G ++R  +S F +I  +G I++ L+  D +  V   +  + +L+ +K G  + F ++ 
Sbjct: 635 IGGFIKRTPVSAFSKIRANGLISINLEDGDALRWVRLASSADSVLIGSKAGMTIHFRLND 694

Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GVR ++L  GD ++SM ++    AD                        
Sbjct: 695 NELRPLGRTARGVRSMNLRDGDSLVSMDVLSKELAD-----------------------R 731

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           I S  +D ++  N   E          +IL  S  G GKR     FR+  RSG G+RA  
Sbjct: 732 IASTNDDEAINSNGQYE--------GPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMK 783

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               ++   LV +  ++  ++++LVS+KG ++R   ++I   SRA  GV +      + +
Sbjct: 784 F--RSDTDELVGLKVLDKGEEVLLVSEKGVIVRTSADKISQQSRAATGVRLQRLDSGDHL 841

Query: 892 VSVERIRESEIVDE 905
             +  +      +E
Sbjct: 842 SEIVLVPPQLADEE 855


>gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus H10]
          Length = 809

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/878 (39%), Positives = 523/878 (59%), Gaps = 86/878 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
            M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K+Y K ARI GEVMG
Sbjct: 1   MMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           K+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PAA RYTE R+ K A  +L
Sbjct: 61  KFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVGM TNIP HNL EV+ G  
Sbjct: 121 RDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLH 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+G+IV+R  ++IE     R
Sbjct: 181 MLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+ G R+ I+++R ASA V+
Sbjct: 241 ERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +++VV RRTK+ L KA  R
Sbjct: 301 LNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEAR 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL IA+ N+DE+V IIR S + + A+  L+ R                       
Sbjct: 361 AHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----------------------- 397

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L + Q++AIL++RL RLTGL RD +  E   L  +I +  DIL+   R+  II  
Sbjct: 398 ---FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYD 454

Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           ELL ++      RRT I    ++ +EDED I ++++++TV+H GY+KR+P+  ++ Q RG
Sbjct: 455 ELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRG 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG  G+ ++D DF+  L   STH  +LFF++ G VY  K + +P     A+G  ++N+L
Sbjct: 515 GKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLL 574

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+F  I  SG IA+ L   D
Sbjct: 575 QLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGD 631

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+ +V T   + +IL+ T LG  V F  + +R    R + GVRGI+L   D V+   ++ 
Sbjct: 632 ELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAMG-RTAAGVRGINLRDHDYVVGSGVLD 690

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                                 +  +L 
Sbjct: 691 -----------------------------------------------------ADDQVLV 697

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +SEKG+GK T + ++ +  R GKGI+  ++++ N  G L  V  ++    I++++  G +
Sbjct: 698 ISEKGYGKHTPAAEYSVKGRGGKGIKTANITEKN--GPLAGVIVISKGKDIMVITTDGIM 755

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           IR    ++    R+T GV +     D +V S+  +   
Sbjct: 756 IRFKTKDVSQTGRSTMGVRLIKVNDDSQVASLTIVPSE 793


>gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 815

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 546/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
          Length = 815

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 545/896 (60%), Gaps = 85/896 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I  + I++EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ MM+ G+  +K 
Sbjct: 2   DTNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R LL++GQGNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  LL D+ K+TVDF PN+D S +EP+VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEARMSKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V  IDN D D+D L++ ++GPDFPT A I+G  GIK AY TGRG + +
Sbjct: 182 PPHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIVVTEIPYQVNKA ++EKIA+LV+EK++  I+DLRDE++R+G R+
Sbjct: 242 RAKAEIEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A+++LN LY+++ L+  FS+ M+A+    P+   L  +L  ++  +++V+ 
Sbjct: 302 VIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKDVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA  RAH+L GL IA+ N+D V+ IIR S   + A+  L++           
Sbjct: 362 RRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLTGL R+ I  E   L   I+    I
Sbjct: 412 ----------------FALSEIQAQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+IK+E+L++K + + PRRT+I+    + + +D    ED+ +T++HLGY+KR
Sbjct: 456 LADELKLLGVIKEEMLAIKAKHEDPRRTQIIPAEGEFDVKDLFEEEDVAITLTHLGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G + +  R+EDFV +L   +T++++LFF++ G VYK   + +P G 
Sbjct: 516 LPADTYKSQKRGGRGIAALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++G A++N+L LN GE++   + F  D  + N                          
Sbjct: 576 RTSKGTAIVNLLQLNPGEKVARTITFNSDNDTGN-------------------------- 609

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                                + + +L+ TK G   +  IS  +     N  G+  I+L 
Sbjct: 610 ---------------------ESDYLLMATKNGIVKKTQISEFKNI---NKSGLIAINLK 645

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD++I + +      D ++ +  +   +   R    D   +              ++R 
Sbjct: 646 DGDELIGVNMT-----DGNQEVVLVTENAMSIRFNEADVRPMGRTATGVKGITLSKDDRV 700

Query: 791 QELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  +   +L VS+ GFGKR+   ++R   R GKGI+  +++  ++ G +V    VN
Sbjct: 701 VSMNLIGEGDNLLVVSQNGFGKRSDVEEYRPQIRGGKGIKTYNIT--SKTGKIVGSSLVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++D++++++  G LIR+ VNEI I  R T GV +  T ++  VVS+ +I+  +I +
Sbjct: 759 EDDEMMMINSNGVLIRIRVNEISIFGRITSGVKLMRTDEEVEVVSIAKIKAEDIEE 814



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 97/225 (43%), Gaps = 15/225 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
            D D     D ++  +  G VK+  +S ++   +   G   + ++D D +  + +   + 
Sbjct: 603 SDNDTGNESDYLLMATKNGIVKKTQISEFKNINKS--GLIAINLKDGDELIGVNMTDGNQ 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V+  +      +     +      A G   +  ++L++ +R+ ++    E ++      
Sbjct: 661 EVVLVTENAMSIRFNEADVRPMGRTATG---VKGITLSKDDRVVSMNLIGEGDN------ 711

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           ++  +++G  +R+ + ++    R GK     +      +I+      +++++++    G 
Sbjct: 712 LLVVSQNGFGKRSDVEEYRPQIRGGKGIKTYNITSKTGKIVGSSLVNEDDEMMMINSNGV 771

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            +R  ++ I +F  R + GV+ +   +  +V+S+A +   D + +
Sbjct: 772 LIRIRVNEISIFG-RITSGVKLMRTDEEVEVVSIAKIKAEDIEEN 815


>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
 gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 865

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/913 (37%), Positives = 535/913 (58%), Gaps = 69/913 (7%)

Query: 1   MTEHIISSDE----EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M++ I+ SD     E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRI
Sbjct: 1   MSD-ILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRI 59

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GN
Sbjct: 60  LYAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGN 119

Query: 117 FGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           FGSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L
Sbjct: 120 FGSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVGMATNIP HNLGE+++G  ++I NP I+   L EII+GPDFPTG  ILGR 
Sbjct: 180 LNGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRE 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GI+  + TG+GSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK
Sbjct: 240 GIRETFKTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEK 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDR G R+VIELKR +   V+LN L++ T LQ+ FS N++AL   +P  
Sbjct: 300 KLEGISDIRDESDRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  
Sbjct: 360 LSLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSI 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +AR +L                               LS +Q+ AIL+++L RLT L  D
Sbjct: 420 SAREKLQNE--------------------------HKLSSIQSDAILQMQLRRLTALEAD 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I+ E N L  +I     IL+S+ R+  II +EL  +  +  +PR+T I++    ++D D
Sbjct: 454 KIKEEHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDID 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L 
Sbjct: 514 LIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLL 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +S  ++ Y++  
Sbjct: 574 FSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFVDDRYLLML 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +K G  + F + 
Sbjct: 631 TKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLD 690

Query: 712 AIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              +   GR + GV+ ++L +GD ++SM ++     D   +I  +               
Sbjct: 691 INELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLTEDL----------- 739

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           ++  +E      ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 740 ----------------DDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  + + ++++LV++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDH 841

Query: 891 VVSVERIRESEIV 903
           +  V  +   +I 
Sbjct: 842 LSEVVLVPREQIE 854



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 102/259 (39%), Gaps = 25/259 (9%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +   D  V +  ++ ++  G++KR  LS +   R    G   + + D D +T +
Sbjct: 609 EEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRS--NGLIAINLEDGDALTWV 666

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINIL---------------- 622
            +     SVL  S  G    ++  +  L      ARG   +N+                 
Sbjct: 667 RLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLV 726

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-- 679
             L + E +T  +    +E+S +  +V+ A+  G  +R  ++ F    R+G     +   
Sbjct: 727 DQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFR 786

Query: 680 -SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D+++ ++   +  ++LL T+ G  VR           R + GV+   L  GD +  +
Sbjct: 787 IKDDQLVCLKVLGEGEELLLVTEKGVIVRTNA-DKISQQSRAATGVKLQRLDDGDHLSEV 845

Query: 739 AIVLHADADYDERICYMKH 757
            +V     +  ++   ++ 
Sbjct: 846 VLVPREQIEGKDQHGSVEQ 864


>gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
 gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 815

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 545/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
 gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
          Length = 815

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 545/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
          Length = 811

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/886 (40%), Positives = 541/886 (61%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG + +IDNP+I    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG 
Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  +++ EIPYQ+NK+ ++E+IA LV+EK+I  I DLRDES+R+G RVVIE
Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  +++ R +V+ RRT
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++             
Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS 
Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+KQELL VKD     RRT I E  +++  ED I  E+M++T ++ GY+KR+  
Sbjct: 456 DNKIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q RGGKG +G+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+
Sbjct: 516 NKYKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + N+L + + E+I  I+     +       +VF TK G V++  L +F  IN  G 
Sbjct: 576 RGRLISNLLRIGEEEKIRAIIKTRVFDKEKE---LVFVTKQGIVKKTSLEEFKNINTGGL 632

Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K    D+++ V      EN++ + T+ G  VRFP   +R   GRN++GV+GI L +G
Sbjct: 633 IAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELREG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  ++                                                   
Sbjct: 692 DEVVSALLI--------------------------------------------------- 700

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            K KE  ILT++E G+GKRT   ++   NR GKG+   ++   ++ G +V+V    D ++
Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGV--INLRCNDKTGNIVSVLTALDEEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++  G +IR P+N I   SRA +GV+I   A DE+V S+ RI+
Sbjct: 758 LVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803


>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
 gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
          Length = 836

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/899 (39%), Positives = 531/899 (59%), Gaps = 93/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + +  +   M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+  ++ Y
Sbjct: 2   DEYNLLNQDVESIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA   G V+G+YHPHG+A++YDAL R+AQ +SLR  L++G GNFGSVDGDPPAA RYT
Sbjct: 62  RKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF+ NYD   QEP VL +R+PN+L NG  GIAVGMATNIP
Sbjct: 122 EAKMAKMAVNMLTDIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G   VI NPD  LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I +R
Sbjct: 182 PHNLHEVIEGMKIVIQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R  IVVTEIPY VNKA ++E IA LV++KR+  I DLRDE+ R G R+V
Sbjct: 242 SKTSIEEIK-GRNCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+  V+LN+L+ YT LQ    V ++AL    P+  TL  IL+ ++ F+  V+ R
Sbjct: 301 IELKKDANPQVVLNKLFSYTQLQDSVGVILLALVNGIPKILTLKQILQEYIDFQVSVIRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++R H+L GL IA+ N+DEV+ I++ S +   A+++L  R           
Sbjct: 361 RTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTR----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++VQ   I ++ L RLTG+ R  I +EL  +   + +  DIL
Sbjct: 410 ---------------FGLTDVQADHIAQMTLGRLTGMERQKIIDELAEITATVADLEDIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R+  II +E+ +++++    RRT+I     +++ ED I  E+ VVT +++GY+KR+
Sbjct: 455 ANEQRVFDIIIEEVEAIQEKFGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRM 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+SVY+AQ RGGKG +G+  R++D +T++ + S+H ++LF ++ G  YK K + LP GS 
Sbjct: 515 PISVYKAQNRGGKGVTGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSK 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG  + N+L L+    I  ++     E   ++ Y+V  TK G ++R  LS +  + ++
Sbjct: 575 ASRGVNIKNLLELSDDNLIAAMIKV---EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKN 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ LD  DEI  V     +N++L+ T  G  +R   + +RV + R + GVR I L +
Sbjct: 632 GLIAIGLDEGDEIAGVRLTGGQNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+SMA +                                                  
Sbjct: 691 GDYVVSMARIREG----------------------------------------------- 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +LTVSE G G+R +  ++ I +R G G+         + G +  +  V++ D
Sbjct: 704 ------ATVLTVSETGLGRRVALENYPIRHRGGHGVLNY------KNGEVCGIKVVDEED 751

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            II++S  G +IR+   +I +  R ++GV +   A + +VV+  R   +E  DEAE  E
Sbjct: 752 DIIMISSDGIVIRLRACDISVMGRYSRGVRLMKVAGENKVVTFTR---TEHDDEAEIAE 807


>gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 825

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/896 (42%), Positives = 545/896 (60%), Gaps = 88/896 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV     Y 
Sbjct: 9   NQDIQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 69  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 128

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +L D+ KDTVDF  NYD + QEP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 129 ARMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPP 188

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H   E++D  V +IDNP   LD +++ + GPDFPTG +I G++GI+ AY +GRG I IR 
Sbjct: 189 HRTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIYGKSGIREAYESGRGRIKIRA 248

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  IA++RDESDR+G RVVI
Sbjct: 249 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVI 307

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 308 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKVFTLLELLDLFLSHRKSVVIRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+D +V +IR S +P+ A+  L+ +            
Sbjct: 368 TIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQ------------ 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL RD I NE  +L  EI+    IL 
Sbjct: 416 --------------FSLSEIQAQAILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILR 461

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S S L GIIK+ELL +K++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 462 SESLLNGIIKEELLEIKEKFSTKRLTTIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVP 521

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH ++LF +  G +Y  KV+++P  S  
Sbjct: 522 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRT 581

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +  S   N  + F TK+G ++R  LS+F  I   G
Sbjct: 582 AIGKAVVNLINLAPDEKIMATITTKDFNS---NKSLAFFTKNGIIKRTNLSEFKNIRSVG 638

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  D +++ +  + +  +IL+ T  G CVRF +  +R    R + GV  I    
Sbjct: 639 VRAINLDENDALVTAKIISSDIKEILVVTYEGMCVRFGVDNVREIG-RVARGVTAIKFKM 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                                                 
Sbjct: 698 PKDYVIGATVVASE---------------------------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++   + G LV +  V++N
Sbjct: 712 ------NEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTP--KTGKLVGIVNVDEN 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  + E  D+ 
Sbjct: 764 MDLMVLTSSGKMIRVDMQSIRKAGRATSGVIIVNVD-DDKVVSIARCPKEEEQDDE 818


>gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
 gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
          Length = 815

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 545/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
          Length = 911

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/908 (37%), Positives = 507/908 (55%), Gaps = 108/908 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC
Sbjct: 30  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 89

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR
Sbjct: 90  SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 149

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 150 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 209

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV  G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 210 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 269

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 270 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 328

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   VILN LY++T LQ  F  NM+AL    P   +L   ++ +++ + EVV
Sbjct: 329 LVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVV 388

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKYL  +A +R H+L G   A+  ++EV+ +IR SP+ + AR  LM           
Sbjct: 389 DRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMD---------- 438

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I +  D
Sbjct: 439 ----------------LLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYND 482

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R   I+  E+  + D+    RRTRI+    +M  ED I  E++VVTV+H GY+K
Sbjct: 483 ILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIK 542

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P G
Sbjct: 543 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEG 602

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L L   E+I  ++   + + +    Y+V AT+ G +++ +L+++    
Sbjct: 603 SRDSKGQHVANLLQLGPDEKIQQVLSIHDYDEA---KYLVLATRSGKIKKTRLNEYDSTR 659

Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           + G IA++L                   DE++    C  E++I++ ++ G  V+F     
Sbjct: 660 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 719

Query: 714 RVF-AGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +   GR + GV+ +     A  D ++SM +V                            
Sbjct: 720 TLRSMGRQTAGVQAMKFRGQAGEDLLLSMDVVPAE------------------------- 754

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      +  ++ V+ +GF KRT+  ++R+  R+G G++A
Sbjct: 755 --------------------------SDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVKA 788

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ +    G+LV    V+++DQI+ +   G +IR  V EI+   R T+GV +    K +
Sbjct: 789 INLVEG--RGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKGD 846

Query: 890 RVVSVERI 897
            ++S+ R 
Sbjct: 847 EIISIARN 854



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 24/296 (8%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG------KGRSGVVMRDE- 574
           E +  +           +V  +  G +K+  L+ Y + R+GG      +   G    DE 
Sbjct: 621 EKIQQVLSIHDYDEAKYLVLATRSGKIKKTRLNEYDSTRQGGLIAVRLREIEGAFRTDEE 680

Query: 575 -------DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR--LPIGSPQARGKALINILSLN 625
                  D +    + +    ++  S  G   K       L     Q  G          
Sbjct: 681 GNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDETLRSMGRQTAGVQ-AMKFRGQ 739

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRD 682
            GE +   M     ES  +   +V  T  G  +R  LS++    R+G   K    ++ R 
Sbjct: 740 AGEDLLLSMDVVPAESDSD---LVVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRG 796

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      +++ I+   K G+ +R  ++ I+   GRN+ GV      KGD++IS+A   
Sbjct: 797 SLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIK-RTGRNTQGVTLAKPDKGDEIISIARNA 855

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             D +  E     + + A         +  T    D +     + E     K  E+
Sbjct: 856 EKDDEDAEEDQATEAVDAADAATGAPADTGTDNGTDDATVETKATEPVATSKADEE 911


>gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 815

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 545/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
          Length = 811

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/886 (40%), Positives = 540/886 (60%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG + +IDNP+I    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG 
Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  +++ EIPYQ+NK+ ++E+IA LV+EK+I  I DLRDES+R+G RVVIE
Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  +++ R +V+ RRT
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++             
Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS 
Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSY 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+KQELL VKD     RRT I E  +++  ED I  E+M++T ++ GY+KR+  
Sbjct: 456 DNKIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q RGGKG +G+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+
Sbjct: 516 NKYKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + N+L + + E+I  I+     +       +VF TK G V++  L +F  IN  G 
Sbjct: 576 RGRLISNLLRIGEEEKIRAIIKTRVFDKEKE---LVFVTKQGIVKKTSLEEFKNINTGGL 632

Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K    D+++ V      EN++ + T+ G  VRFP   +R   GRN++GV+GI L +G
Sbjct: 633 IAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELREG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  ++                                                   
Sbjct: 692 DEVVSALLI--------------------------------------------------- 700

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            K KE  ILT++E G+GKRT   ++   NR GKG+     ++  + G +V+V    D ++
Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCNE--KTGNIVSVLTALDEEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++  G +IR P+N I   SRA +GV+I   A DE+V S+ RI+
Sbjct: 758 LVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803


>gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 718

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/714 (49%), Positives = 485/714 (67%), Gaps = 12/714 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+  +W   ++  +++
Sbjct: 366 TIFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++
Sbjct: 606 QLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           F +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R    
Sbjct: 663 FSRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGR 716



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 519 TEITANTADINIEDLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 578

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVE 895
             L+     N +D I+  S +G +  + V ++  ASR  +G  I +      DER+ ++ 
Sbjct: 579 ERLLVA---NTHDTILCFSSRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAIL 635

Query: 896 RIRE 899
            +RE
Sbjct: 636 PVRE 639



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 15/213 (7%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+   A   D   E    +   QE+ ++  +  G     P+S       R   G     
Sbjct: 517 RRTEITANTADINIE----DLIEQEDVVVTLSHQGYVKYQPLSDYEA-QRRGGKGKSAAR 571

Query: 729 LAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + D +  + +    D         R+ +MK               I +L    + E  
Sbjct: 572 IKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERI 631

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +    +E   +   +   +  G  K+T+  +F     +G  I A +++  +E   L+ V
Sbjct: 632 TAILPVRE-YAEGVNVFMATASGTVKKTALTEFSRPRAAG--IIAVNLNDGDE---LIGV 685

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              + ND+++L S  G ++R   + +R   R  
Sbjct: 686 DLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTA 718


>gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728]
 gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 831

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/917 (38%), Positives = 513/917 (55%), Gaps = 96/917 (10%)

Query: 1   MTEHIISSDEEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++      E  E G   I  V +  +MQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL
Sbjct: 1   MSDPNQPELEVPEVGAGRIEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +GM   G   ++ YVKC+R+ G+VMG+YHPHG++AIYD+L RMAQ WS+R  LI+GQGNF
Sbjct: 61  YGMYDGGYRPDRGYVKCSRVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS   DP AA RYTE RL   A  +L D+ +D+VDF PNYDG   EP VL AR PN+LVN
Sbjct: 121 GSPGNDPAAAMRYTESRLDPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV       +DN + D +     L+++++GPDFPT A+I+G
Sbjct: 181 GSEGIAVGMATKIPPHNLREVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIVG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI++AY TGRGSI +R V  +E+    R  +VVTE+PYQVN   + E+IAELV++ ++
Sbjct: 241 RAGIEDAYRTGRGSIRMRAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKL 300

Query: 294 VDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+R+ES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL    P   
Sbjct: 301 NGIADIREESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L   ++ +VA + EV+VRRTK+ L KA +RAH+L GL  A+  LD V+ +IR SP+ E 
Sbjct: 361 NLAQFVRHYVAHQIEVIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEE 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           ++  LM                            + + E+Q  AIL+++L RL  L R  
Sbjct: 421 SKTGLMN--------------------------LLEVDEIQATAILDMQLRRLAALERQK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +EL  +  +I +  DIL+   R   IIK EL ++  +    RRT+IV    ++  ED 
Sbjct: 455 ILDELAEIEAKIADLEDILAKPERQRQIIKDELGAIVAKWGDERRTKIVPFEGEVNMEDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RED+VVT++  GY KR  + +YR+QRRGGKG SG  ++ +D V+  F+ STH  +LFF
Sbjct: 515 IAREDVVVTITRGGYAKRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + LP  S  ARG+ + N+L+    E+I  +M     + +    Y+V AT
Sbjct: 575 TNKGRVYRAKAYELPEASRTARGQHVANLLAFQPDEQIAQVMQISGYDVA---PYLVLAT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G V++ KL+DF      G I + L   DE++       ++D+LL +K  Q +RF  S 
Sbjct: 632 RRGLVKKTKLTDFDSPRTGGVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASD 691

Query: 713 IRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +   GR + GV G+   + D++++M +V                         G  + 
Sbjct: 692 ESLRPMGRATSGVIGMRFVEADELLTMEVVR------------------------GGMDI 727

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           + +     +    + E   Q               G G  T+    +I+ R G  + A  
Sbjct: 728 LVATSGGYAKRTPVEEYPQQ------------GRGGKGVLTA----KITERRGNLVGALS 771

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890
           V+  +E               +  ++ +G +IR PV  +R    R T GV +    +   
Sbjct: 772 VTPDDE---------------LFAITSEGGVIRTPVKPVRRTTDRNTMGVKLMDLPEGVS 816

Query: 891 VVSVERIRESEIVDEAE 907
           ++++ R   ++  DE +
Sbjct: 817 LLAMAR--SADEPDEQD 831


>gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 815

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/898 (39%), Positives = 544/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R    R + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMG-RVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                   +D S    IS
Sbjct: 692 IKLRANDYVVGSSIV-----------------------------------DDHSEVLVIS 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+                    GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 717 EKGY------------------GKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 815

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/904 (39%), Positives = 544/904 (60%), Gaps = 89/904 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++  +++E     +  V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSDNNTNNEEM---RVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K   + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R  L++G GNFGS+
Sbjct: 58  NGLGLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG  
Sbjct: 118 DGDPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DG +A IDNP I  + LM+ I+GPDFPTG +I+G+ GI+  
Sbjct: 178 GIAVGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIVGKDGIRET 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE     R +IV+TE+PY V K+ ++EKIAELVR+K I  I+DLR
Sbjct: 238 YETGRGKIIVRAKAEIE-EHNGRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR  +  V+LN+LY +T +Q  F   M+AL    P+  +L  I++ 
Sbjct: 297 DESDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEK 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + +V+ RRT++ L KA +RAH+L GL IA+ ++DEV+ +IR S     A++ LM +
Sbjct: 357 YVDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDK 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q++AI+++RL RLTGL R  + +ELN L
Sbjct: 417 --------------------------FGLSDKQSQAIVDMRLGRLTGLERQKVEDELNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+E   IL+   ++L IIK+EL  +KD+  + R+T IV  + +M+ ED +  ED VV
Sbjct: 451 YRKIEELKGILADEKKVLEIIKKELKEIKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+PL  Y++Q+RGGKG SG+  R++DFV ++F  +TH  +LFF++ G VY 
Sbjct: 511 TMTHFGYIKRMPLDAYKSQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYS 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P    QA+G A++N++ ++Q E+++ ++P    + S    YVV  TK G +++ 
Sbjct: 571 LRTIDIPESGRQAKGTAIVNLIQIDQDEKVSAVIPI---KKSVKAKYVVMCTKKGIIKKT 627

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++ DF +I +SG  A+KLD  DE+++V     + +I++ T  G C+RF  + +R    R 
Sbjct: 628 EIDDFPKIKKSGNTAIKLDDGDELINVMLTNGDREIIIGTANGYCIRFHENNLRPMG-RQ 686

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV  ISL   D V+ M ++                          D E +   +N   
Sbjct: 687 ARGVIAISLRDDDYVVEMDLINE------------------------DNEILVVTENGYG 722

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
              ++ E R Q    K      +++K                +GK +    VS+ +    
Sbjct: 723 KRSDVKEYRSQTRAGKGIIATKITQK----------------TGKLVSIMSVSEKD---- 762

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                      +++++S  G LIR  + +I    R   GV +      +RVVS  +I   
Sbjct: 763 -----------ELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKIDND 811

Query: 901 EIVD 904
           +  +
Sbjct: 812 DDQE 815


>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
          Length = 856

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/902 (39%), Positives = 558/902 (61%), Gaps = 87/902 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ +   I  V + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q+G++ +
Sbjct: 6   NQNKNSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGLDPS 65

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y KCA   G+V+G YHPHG+A++YDA+ R+AQD+S+R +L++G GNFGSVDGDPPAA 
Sbjct: 66  KPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPPAAY 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  +L D+ K+TVDF  NYD   +EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 126 RYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP HNLGE +D    +IDNPD +L  +ME + GPDFPTG +I+GR+GI+ AYATGRG I
Sbjct: 186 EIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIMGRSGIRAAYATGRGKI 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + I +    R +I+VTE+PY+VNKA ++E IA+LV++KRI  I+++ D SDR+G 
Sbjct: 246 TVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSDRKGM 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + I++KR AS  ++LNQL+ YT LQ+ F   M+++   +P+  +L  +L+ ++ F+ EV
Sbjct: 306 HIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGEPKILSLKEMLQCYIEFQAEV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KARDRAH+L GL IA+  +DEV++IIR S +  +A+  LM+R        
Sbjct: 366 IRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMER-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L +VQ +AI+++RL +LT + +  I +E+ +L  +I+E L
Sbjct: 418 ------------------FGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYL 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S  R L I+K+E++ ++++   PRRT I     +++ ED I +E+ V+T++  GYV
Sbjct: 460 EILASEPRQLEIVKEEIMQIRNKYADPRRTEICAVSGEVDIEDLIPQEECVLTLTQFGYV 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    Y+ QRRGG+G SG+  R+ED   ++F++++H  VLFF+  G VY+ K + +P 
Sbjct: 520 KRLSADTYKIQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS Q++G  + N++ ++  E++T+++  PE +      Y+V  T+ G ++R +L+ +   
Sbjct: 580 GSRQSKGVNIANLIPISPDEKVTSMIRVPEFDEE---KYLVMVTRQGIIKRIELNAYNTS 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + G IA++L+  DE+  V      + +++ TK G  +RF  + IR    R + GV+ ++
Sbjct: 637 RKGGLIALELNEGDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAMG-RQARGVKAMA 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+ M++V                                               
Sbjct: 696 LKEGDCVVGMSVVREGG------------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +LTVSE G+G+ +S  D+R+ +R GKG+         + G + A+  VN
Sbjct: 713 ----------LVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHT---EKYGDVAAIKVVN 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +D II++S++G +IR+    IR+ +R +KGV +     D+RVV++ R+   +  D+ ES
Sbjct: 760 LDDDIIIISEEGIIIRIAAESIRVCARPSKGVTVMKVNGDDRVVTIARVPHIDGEDD-ES 818

Query: 909 TE 910
            E
Sbjct: 819 AE 820


>gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 840

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/913 (38%), Positives = 543/913 (59%), Gaps = 95/913 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I D+M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  Y
Sbjct: 3   EGEKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQDW++R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+++ A  +L D+ K+TVD R N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA ++N +I +D L+E I+ PDFPTG  I G  G++ A+ TGRG I+IR
Sbjct: 183 PHNLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIYGYDGVREAFKTGRGRIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G +H E+    R+ I+VTEIPYQVNKA M+++ A+LV+E ++  IAD+ DE+ + G R+V
Sbjct: 243 GKAHFEEVDN-RDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+ A  +V+LN L+++T LQS FSVN +AL   +PE+  L  ++  FV  R +VV R
Sbjct: 302 YVLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALVNGRPEQLNLKDLIYHFVEHRHDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KA+++AH+L G          LD  + IIR S NP+ A+ EL++         
Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKE-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q++AIL+LRLARLTG+  + IR E   +   I +  
Sbjct: 414 ------------------FELSEIQSQAILDLRLARLTGMELNKIREEYEQIMALIMDLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK EL+ VK +    RR+ I     D+  ED I  E +V+T+S+ GY+
Sbjct: 456 DILAHKERRTEIIKNELIEVKAKYGDDRRSIIEYSGGDISMEDIIPNEQVVITISNAGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P++ Y+ Q RGG G+     RD+DF+  LF+ + H  +LFF+  G  +  +V+ +P 
Sbjct: 516 KRTPVNEYKTQARGGVGQKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G    +G+A+ N+++++  + +   +   +  D+   N+ YV+ ATK G +++  L  + 
Sbjct: 576 GGRNTKGRAIQNLINIDSEDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G +A+ +   DE+L     T  + +++  K G+ +RFP   +R    R+  GVRG
Sbjct: 636 RPRQNGIVAITIKEDDELLEARLTTGSSQVMMAVKSGKAIRFPEEKVRSVG-RSGSGVRG 694

Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           IS    K D+VI M  + +                                         
Sbjct: 695 ISFDDEKNDEVIGMITIENP---------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINE 837
                      KE+ +L VSE G+GKRT   D       +RI+NR GKG++   +++  +
Sbjct: 715 -----------KEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITE--K 761

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA+  V+  D +++++  G  IR+ V  +R+  RAT+GV + +  +++ + +V ++
Sbjct: 762 TGKLVAIKSVSQEDDLMIINKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVAKV 821

Query: 898 RESEIVDEAESTE 910
            + +  +     E
Sbjct: 822 MKEDDNEIDSGEE 834


>gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
 gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
          Length = 816

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/899 (38%), Positives = 523/899 (58%), Gaps = 87/899 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           SS  +    +  + + +E+++SYL YA++VI+GRA+PD RDGLKPV RR+L+ M+++G+ 
Sbjct: 5   SSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLELGLR 64

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ + K AR+ GE MGKYHPHG+AAIY+ +AR++QD+SLR  L++GQGNFGS+DGDPPA
Sbjct: 65  HNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGDPPA 124

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL      +L D+ ++TV++ PN+D S QEP+VL +R PN+LVNG  GIAVGM
Sbjct: 125 AMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIAVGM 184

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+P HNL EV+D   A++++P I+L  LM ++ GPDFPTG VILGR GI +AY TGRG
Sbjct: 185 ATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVILGRDGIVDAYKTGRG 244

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +++RG + IE     R+ IV+TEIPY VNK +++E IA+  +   +  I DLRDES+R+
Sbjct: 245 KVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDESNRE 304

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL R A  +++L QLY  T LQS F V  +AL   +P   TL  IL+ F+  R 
Sbjct: 305 GIRVVLELHRDADPNLVLRQLYSRTQLQSTFGVINLALVDGRPRVLTLHQILQVFLDHRR 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRT++ L KA +RAH++ GL  A+  +D+V+ +IR + +P +A+  L++       
Sbjct: 365 AVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVE------- 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T+  SEVQ +AIL++RL RLTGL R  +  EL  L  +I+ 
Sbjct: 418 -------------------TLGFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIER 458

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL++ S L G+++ EL  ++   +  RRTRI + + D+  ED I   ++VV +S  G
Sbjct: 459 YRSILANPSILDGVVRGELQEIRAAYEDDRRTRIEDAVEDVSAEDLIPESEIVVVLSRDG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++R+PL  YR Q RGGKG  G   R ED +  + + +TH ++  F+S G V+  + + L
Sbjct: 519 FLRRMPLQDYRCQSRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTL 578

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +GK +   +SL +GER+ T+     D       +V F T+ G  +R  +++  
Sbjct: 579 PE-PKTGKGKHVSTFVSLEEGERVVTL----RDSRLDGARFVFFVTQRGVAKRLPVTELD 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            INR+G+  + L   D I  V     E+++LLTT  GQ +R P    R   GR + GVRG
Sbjct: 634 GINRAGRRILGLAPEDTIARVRFTGGEDELLLTTAQGQTLRVPEGEFRP-QGRTAHGVRG 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD V+   ++                                             
Sbjct: 693 VRLDEGDLVVGCDVIEP------------------------------------------- 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + +L +SE+G GKRT   +F   +R G G+RA  +  ++  G LV  + 
Sbjct: 710 ----------GRQVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKL--VDRTGDLVGAWG 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V ++D+++++S KG ++R+   EI    RA  G  +    + + V  V  IR +++ +E
Sbjct: 758 VREDDELVVISAKGRMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSIIRCADLEEE 816


>gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
 gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
          Length = 816

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/885 (39%), Positives = 516/885 (58%), Gaps = 83/885 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++   +N+ Y K AR
Sbjct: 7   EQINIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSAR 66

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ ++YDAL RMAQ++S+R  +++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 67  VVGDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMS 126

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   L D+ K+TV FRPNYD S QEP VL  + PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 127 RLAGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 186

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ DG +  +DNP  D+  ++ +I GPDFPTGA I G  G+ +AY TGRGSI IRG   +
Sbjct: 187 ELCDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGRGLYDAYTTGRGSIKIRGRVEV 246

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+   D + +V+ EIPY +NK++++EKIA L+ + RI  ++DLRDESDR+G R+V++LK+
Sbjct: 247 EERKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLKK 306

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD+I N LY+YT L++ F +NM+ +   +P    +  +L+ F+A R EV++RRT Y 
Sbjct: 307 GVIADIITNALYKYTPLETSFGINMMVVADNRPATLNIQQMLEHFLAHRREVILRRTAYD 366

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                
Sbjct: 367 LRKSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMER---------------- 410

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q +AIL++RL RLT L R  + +E N L   I+    IL++   
Sbjct: 411 ----------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEV 460

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L G+I+ E+  ++D   TPR+T ++E L  +   D I  ED+V+T+S  GY+KR  +  Y
Sbjct: 461 LRGVIRDEIKEIQDRYATPRKTEVLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNY 520

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G 
Sbjct: 521 QQQKRGGKGVAGVSTSADDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGA 580

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L +++ E + T +   E  S     Y +F TK G V+R+    +     +G IA+
Sbjct: 581 HIANLLPMDKEEFVATALAIREFSSE---RYFLFVTKRGMVKRSCTELYKNCRSTGIIAV 637

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE+L+V+      ++LL T+ G   RF IS IR   GR + GV+GI+L   D+V 
Sbjct: 638 SLKEGDELLTVKEIDDNAEVLLATQQGLSNRFHISGIRP-TGRGAAGVKGIALKGADRVA 696

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  I+                                                       
Sbjct: 697 AGVIMTGNG--------------------------------------------------- 705

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LTVS  G+GKRTS   + + NR G G+    V+   + G ++    V   D ++L+
Sbjct: 706 RNEVLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVLPEDDLLLL 763

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +    +IR+ V+ I    RAT+GV++     D+ V   + +  ++
Sbjct: 764 TSANKIIRLSVSGISSVGRATQGVMLVRMENDDTVTGFDLVDPND 808



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 86/233 (36%), Gaps = 13/233 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +           E   + V+  G VKR    +Y+  R    G   V +++ D +  +
Sbjct: 591 EEFVATALAIREFSSERYFLFVTKRGMVKRSCTELYKNCRST--GIIAVSLKEGDELLTV 648

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             +  +  VL  +  G   +  +  +    P  RG A +  ++L   +R+   +      
Sbjct: 649 KEIDDNAEVLLATQQGLSNRFHISGI---RPTGRGAAGVKGIALKGADRVAAGVIM---- 701

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDIL 697
           +      V+  + +G  +R  +  +   NR G   + +       +++       E+D+L
Sbjct: 702 TGNGRNEVLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGAVMVLPEDDLL 761

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           L T   + +R  +S      GR + GV  + +   D V    +V   D    E
Sbjct: 762 LLTSANKIIRLSVS-GISSVGRATQGVMLVRMENDDTVTGFDLVDPNDPTQCE 813


>gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 875

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/905 (37%), Positives = 508/905 (56%), Gaps = 93/905 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   II     E   +  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 12  MDGEIIEP-IHEGGRVDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 70

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + Y KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW +R  L  GQGNFGS 
Sbjct: 71  YDGGYRPERSYNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPLALGQGNFGSP 130

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA+RYTE ++   A  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  
Sbjct: 131 GNDGAAAQRYTETKMAPLAMEMVRDINENTVDFQDNYDGKNQEPTVLPARFPNLLVNGSS 190

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    + NP+   +     LM  ++GPDFP+GA+ILG  G
Sbjct: 191 GIAVGMATNIPPHNLREVAEGVQWYLQNPEASREELLAELMLRVKGPDFPSGAMILGTKG 250

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V ++E+    R  +VVTE+PY  N   +  KIAELVR+ +I  I
Sbjct: 251 ISDAYRTGRGSITMRAVVNVEEIQ-GRTCLVVTELPYMANPDNLAVKIAELVRDGKISGI 309

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE+  R G R+VI LKR A A V+LN LY++T LQS FS NM+A+    P    L 
Sbjct: 310 ADMRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLPLD 369

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V  + EV+VRRT+Y L KA + AH+L GL  A+  LDEV+ +IR S   E AR 
Sbjct: 370 GFIRHWVTHQIEVIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIALIRRSATTEAARD 429

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E Q RAIL+++L RL  L R  I++
Sbjct: 430 GLME--------------------------LLDIDEDQARAILDMQLRRLAALERQKIQD 463

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534
               L   I E   I++  +R   I+ +EL  +  +    RRT+++ G   DM  ED I 
Sbjct: 464 RHAELDRMIAEFKAIIADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYDGDMSVEDLIP 523

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+MVVT++  GYVKR  +  YR+Q RGGKG  G  +R +D V   F+ STH  +LFF++
Sbjct: 524 EEEMVVTITRGGYVKRTRIDNYRSQARGGKGIKGANLRGDDVVEHFFVTSTHNWLLFFTN 583

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ K + L      A+G+ + N+++    E I  ++     +   +  Y++ AT++
Sbjct: 584 HGRVYRTKCYELAEAGRDAKGQHVANVMAFQPDEHIAQVLDLRTYQ---DAAYLMLATRN 640

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++ +L D+     +G IA+ L   DE++S +  ++ +D++L ++ GQ VRF  +   
Sbjct: 641 GLVKKTRLEDYDTNRTAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQSVRFTATDTA 700

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +   GR + GV G+   +GD++++  +V                                
Sbjct: 701 LRPMGRATSGVTGMKFREGDELLAADVVRD------------------------------ 730

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++ TV+ +G+ KRT+  ++R+ +R G GI+   ++
Sbjct: 731 -----------------------DSYVFTVTNEGYAKRTTVAEYRVQSRGGLGIKVAKLN 767

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  E G LV    V++ D++++V   G ++R  V+++    R T GV+     K + +++
Sbjct: 768 E--ERGELVGALIVDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIFAKPDKKDHIIA 825

Query: 894 VERIR 898
           V +  
Sbjct: 826 VAKNS 830


>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
          Length = 830

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/844 (42%), Positives = 522/844 (61%), Gaps = 35/844 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E   +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K 
Sbjct: 2   SERSSVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +LI+G GNFGSVDGD  AA RY
Sbjct: 62  YKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +  +L D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNI
Sbjct: 122 TEARMSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H LGE++DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TGRGSI +
Sbjct: 182 PPHQLGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQILGRSGIRRAYETGRGSITV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE     RE I+V E+PYQVNKA ++EKIA+LVR+K+I  I+DLRDESDR G R+
Sbjct: 242 RAKVEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+ A+A+V+LN LY+ TSLQ+ F +N++AL   +P+   L   L  ++  ++ V+ 
Sbjct: 302 VMEVKKDANANVLLNNLYKQTSLQTSFGINLLALVNGEPKVLNLKQCLYYYLEHQKVVIK 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA  RAH+L GL IA+ +LD V+ +IR S   + AR  LM            
Sbjct: 362 RRTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL RLTGL R+ I  E   L   I E   I
Sbjct: 412 ----------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYQGLMQLIAELKAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVK 549
           L+   ++L II++EL  VK+  +  RRT I+ G  + +EDED I R+++V+T++H GY+K
Sbjct: 456 LADEEKVLEIIREELTEVKERFNDTRRTEIMVGGFENIEDEDLIPRQNVVITLTHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR+QRRGG+G  G+   + DFV  L   STH ++LFF++ G VY+ K + +P  
Sbjct: 516 RLPLSTYRSQRRGGRGIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEF 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  +IN+L + +GE +  I+P    E   ++ Y+ F TKHG  +R+ LS F  I 
Sbjct: 576 SRTAKGIPIINLLEVEKGEWVNAIIPV---EDFVDDWYLFFTTKHGISKRSPLSQFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   DE++SV+      ++++ TK G  +RF  + +R    R + GV+GIS+
Sbjct: 633 KGGLIALGLRESDELISVKLTDGTKEMIIGTKKGMLIRFHETDVRSMG-RTATGVKGISI 691

Query: 730 AKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           ++ D+V+ M ++    D     +  Y K   A+   +     +     N +   G   E 
Sbjct: 692 SENDEVVGMELLDEGLDVLVVTKNGYGKRTPAEEYRVQSRGGKGIKTCNITDRNG---EL 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +    E+ ++ ++  G   R S        R+ +G++   +++   +  +  V    
Sbjct: 749 VSVKTVTTEEDLMLITASGVLIRMSVDGISQMGRNTQGVKLIRLAENEFVTTVARVDKEE 808

Query: 849 DNDQ 852
           + + 
Sbjct: 809 EPED 812


>gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 856

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/900 (38%), Positives = 530/900 (58%), Gaps = 90/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I S ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +  N K+
Sbjct: 5   KDEVIVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGDPPAA RYT
Sbjct: 65  RKCAKISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  L+DDL KDTV+  PNYD + +EP V  +++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++   + +++NP   +D +M+++ GPDFPTG +I G  GIK A+ TGRG +++R
Sbjct: 185 PHNLNELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMICGYRGIKEAFHTGRGKLILR 244

Query: 252 GVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           GV  +E  + + DR ++ + EIPY VNK+ ++E IAEL+  K I  I+DLRDESD+ G R
Sbjct: 245 GVIRVEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG   +VI+NQLY+++ LQ  F  NM+AL+   P    +  ++  ++  R +VV
Sbjct: 305 IVIELKRGEVPEVIINQLYKFSDLQITFGCNMLALDKGLPRTMNVKQLISVWIEHRIDVV 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L G   A+ +LDEVVR+IR S N + AR EL+++         
Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQ--------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q  AIL+LRL +LTGL RD I +E   L  +I     
Sbjct: 416 -----------------FEFTERQANAILDLRLYQLTGLERDKINDEYQELLKKIDYLRA 458

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S + +  II++ELL ++    + R+T+I+    ++  ED I  E +++T+S   Y+K
Sbjct: 459 VLASEAMVKEIIREELLDIQKHHKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P++ +R QRRGG+G +G+ ++ +ED +  L++ +TH  +L F++LG  Y  KVW++P 
Sbjct: 519 RMPVNTFREQRRGGQGVTGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPE 578

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +++GK LIN+L  +   E+I TI      E       ++ ATK   V+++ L++F  
Sbjct: 579 TGRKSKGKPLINLLEDIRPEEKIATIQRVSSFEEE---ACILMATKRAVVKKSLLNEFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R G  A+ +D  DE+++      E  ++L T  G  VRF  S +R    R + GV+G 
Sbjct: 636 PRRKGIWALDIDEGDELVAARLVKPEQQVMLFTHQGMAVRFEESNVRPMG-RTARGVKGA 694

Query: 728 SLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L  + D ++   +V   ++                                        
Sbjct: 695 TLRGENDYIVGCEVVNGDES---------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL V E GFGKR+   DFR +NR G G+R+   S+ N  G ++    
Sbjct: 715 -------------ILVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERN--GKVIGALC 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V D D ++++S  G  +R+ +N++R+  R T+GV + +  +++ +V++++++ SE   E 
Sbjct: 760 VTDEDGMVMMSATGQTVRINMNDLRVMGRNTQGVKLANLKENDYLVAIQKLQGSENQSEE 819


>gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 841

 Score =  724 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/930 (38%), Positives = 530/930 (56%), Gaps = 110/930 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++   S+        + SITD MQ +Y+ Y+++VI+ RA+PD RDG KPV RRIL+ M
Sbjct: 1   MSDNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           ++ G+  N+ + KCA + GEV+  YHPHG++++YD L R+AQDW +R  LI  QGNFGS+
Sbjct: 61  LREGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTEC+LQ  A   L D+ +DTVDF PNY  S  EP VL A  PN+L+NG  
Sbjct: 121 DGDSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM TNIP HNL E++D   A+IDNP I+LD L++ I GPDFP G  I G++GI++ 
Sbjct: 181 GIAVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGGFIHGKSGIESY 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG +  RGV+ +   +  +E+I+++ IPY VN+A+++ +IAEL++EK I  I+DLR
Sbjct: 241 LKTGRGIVRTRGVAEV-VENKGKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES  +   +VIELKRGA   VI+NQLY+ T+L+S F V ++AL+  +P++  +  +L  
Sbjct: 300 DESTEETR-IVIELKRGAIPRVIINQLYKSTALESSFGVILLALDNRRPKQMNIKEMLTC 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R EV+ RRT + L KA  RAH+L G  IA+ N+D+ V+IIR S N E A+  LM +
Sbjct: 359 YIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMAK 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E+QT AILELRL +LTGL RD I  E   L
Sbjct: 419 --------------------------YPLTEIQTNAILELRLYQLTGLERDKIEEEYRKL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E  DIL + SRLL +IK+EL  +K++   PRR++++    D+  ED +  E  ++
Sbjct: 453 MELIGELKDILENESRLLEVIKEELGEMKEKYGNPRRSQVIAVDGDISMEDLVPNEGCMI 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H G++KR  L  YR+Q+RGGKG  G    ++DFV  LF  STH  V+ F + G VY 
Sbjct: 513 TVTHKGFIKRTSLDEYRSQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYV 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKV+ +P GS  A+G+A+ N+  L +GE+I  ++   + + S  +  +V AT++G  ++ 
Sbjct: 573 EKVYHIPEGSRTAKGRAMANVFELQEGEKIAAMICVKDFDESAQS--IVLATENGVTKKT 630

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF    + G I + +D  D ++     + E+DI+L T   Q +RFP + +R   GRN
Sbjct: 631 KLSDFRNHRKGGIIGINIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLR-DQGRN 689

Query: 721 SVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + GVRGI L  + D+V+++ IV                                      
Sbjct: 690 TRGVRGIKLKSENDKVVAIEIVDD------------------------------------ 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  +L     G GKRT   ++R  +R G GI A    K     
Sbjct: 714 -----------------EAKLLIAGANGLGKRTEFSEYRQQSRGGSGIIAIKSDK----- 751

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-- 897
            +     V D D+I++ + KG  +R P++ +R+  RA  GV + +    + ++ + ++  
Sbjct: 752 -VAGALSVTDADEIMMFTLKGQAVRSPIDTVRVTGRAASGVKLVNLGNKDELIGISKVIA 810

Query: 898 ------------RESEIVDE-----AESTE 910
                        E E  DE      E+TE
Sbjct: 811 SEEDEAGEGEDAVEGEAPDEVATEAPEATE 840


>gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2]
 gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 815

 Score =  724 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/890 (41%), Positives = 533/890 (59%), Gaps = 86/890 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M  +G   N+ Y K AR
Sbjct: 3   DTISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YDAL RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMA 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +     L D+ K TVDFRPNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNL 
Sbjct: 123 RLCSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLS 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++DGCV ++DNP   ++ +M  ++GPDFPTG ++ G  G+ +AY TGRGSI IRGV  I
Sbjct: 183 ELIDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGGQGLYDAYTTGRGSIKIRGVVEI 242

Query: 257 EKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E+T   +++ IV+ EIPY +NK+ ++EKIA LV EK+I  +ADLRDESDR+G R+V++LK
Sbjct: 243 EETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLK 302

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RGA AD+I+N LY+YT L++ F +NM+A+ G +P    L  +L  F+  R EVV+RRTK+
Sbjct: 303 RGAIADIIINALYKYTPLETSFGINMMAVVGKRPMLLNLKSVLDYFLDHRREVVIRRTKF 362

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+K   R H+L GL IA+ N+DEVV++IR S +P+ A+  LM R               
Sbjct: 363 DLDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMAR--------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL +LTGL  D +  EL  L  +I+    IL++  
Sbjct: 408 -----------FSLSEIQAKAILDMRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNED 456

Query: 496 RLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L  +I+ EL  +K+   TPRR+  +      ++ ED I  E+ VVT+S  GY+KR PLS
Sbjct: 457 VLKSVIRDELKEIKENYSTPRRSELLTANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLS 516

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQRRGGKG SGV   D DF+    + + H  ++ F++LG ++K K  ++P GS  A+
Sbjct: 517 NYTAQRRGGKGISGVQTGDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAK 576

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L++ E ITT +   E +   ++ + +F TK G ++R+ +  +     +G  
Sbjct: 577 GGHVANLLPLDKDECITTALSLREFD---DDRFFLFLTKKGMIKRSSIGLYGNCRSTGIR 633

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     + D +L T+ G  +RF I+  R    R + GV+G++L   D+
Sbjct: 634 AVNLRDGDELMMVREIEPDVDCILVTRDGSAIRFNINDARPLG-RTTAGVKGVALRGDDE 692

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++  +    + D                                               
Sbjct: 693 VVACVVTGDPERDQ---------------------------------------------- 706

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LTVS  GFGKRT    +R  +R GKGI    ++  N+ G +V    VN++D +I
Sbjct: 707 -----LLTVSAGGFGKRTGIDQYRQQSRGGKGILNMRLT--NKTGKVVGARMVNESDDVI 759

Query: 855 LVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIV 903
           L++    +IR+ V+E+     RAT+GV +     +  V+  E + E E  
Sbjct: 760 LLTSANKIIRMSVSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEE 809



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 88/219 (40%), Gaps = 12/219 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +   + ++  G +KR  + +Y   R    G   V +RD D +  +  +      +  + 
Sbjct: 603 DDRFFLFLTKKGMIKRSSIGLYGNCRST--GIRAVNLRDGDELMMVREIEPDVDCILVTR 660

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +   + +    P  R  A +  ++L   + +   +   + E       ++  +  
Sbjct: 661 DGSAIR---FNINDARPLGRTTAGVKGVALRGDDEVVACVVTGDPERDQ----LLTVSAG 713

Query: 655 GNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  +  + Q +R GK  + +   +   +++      + +D++L T   + +R  +S
Sbjct: 714 GFGKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGARMVNESDDVILLTSANKIIRMSVS 773

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +    GR + GVR + +   + VI   +V+  + +  +
Sbjct: 774 EVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEELKD 812


>gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
 gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
          Length = 810

 Score =  724 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/841 (41%), Positives = 527/841 (62%), Gaps = 34/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  V I++E++ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M  +G+  +K Y
Sbjct: 3   DPGKILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G+V+ K+HPHG+AA+YDAL R+AQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 63  KKSAWVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EARLSKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +ID+PD  ++ LM+ I+GPDFPTGA+ILGR GI +AY TGRGSI++R
Sbjct: 183 PHNLGEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALILGREGILDAYRTGRGSIILR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ SG + +IVVTEIPYQVNKA ++EKIAELVREKRI  I DLRDESDR+G R+V
Sbjct: 243 AATQIEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+R     V+LN L+++T+LQ+ + V M+ L   +P    L  +L+ ++  +E+V+ R
Sbjct: 303 IELRRDVKPRVVLNNLFKHTALQTSYGVIMLCLVDGRPRVLNLGEMLRYYLRHQEDVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KA  RAH+L GL IA+ ++D V+ +IR S   E AR  L+++           
Sbjct: 363 RTTYDLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQ----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                           +LSE Q +AIL++RL RLTGL R  I  E   L  +IKE   IL
Sbjct: 412 ---------------FHLSEEQAQAILDMRLQRLTGLERQKIDEEYAELVEKIKELRAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   ++LG+I++ELL +K +    RRTRI  G  ++EDED I  E++ VT+SH GY+KR 
Sbjct: 457 ADEKKILGVIREELLDIKAKYGDERRTRITAGEGEIEDEDLIPMEEVAVTLSHDGYIKRQ 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S+Y++QRRGG+G + +  ++EDFV  LFI S+H  +LFF++ G VY+ K + +P    
Sbjct: 517 PMSLYKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L+++QGE+I+ ++P     S+    Y++ AT+ G +++  L +F  I R 
Sbjct: 577 AAKGTPIVNLLNVDQGEKISAVVPIR---STDGGQYLIMATREGTIKKTPLDEFENIRRG 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G +A+ L   DE+++V       +++L T+ G  +RFP + +R    R + GV+ + L  
Sbjct: 634 GLVAISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSMG-RGAAGVKAVDLQG 692

Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           G   +    +    D        + K              +     + ++  G++     
Sbjct: 693 GDVVIDMDVVDPDGDVLVVTNRGFGKRTPITEYRHQSRGGKGIRTLHVTARTGSV---VS 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++   ++ ++ ++  G   R    +  +  R+ +G++   + +  E+  +  V    + 
Sbjct: 750 LKMVRNDEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLITLKEDEEVSTVAKVVCAGEG 809

Query: 851 D 851
           +
Sbjct: 810 N 810



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
             +++        V  +  G ++R  +S +    R   G  AM     D +  +   +  
Sbjct: 492 IEDEDLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHLFITSSH 551

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +L  T  G+  R     +     R + G   ++L   DQ   ++ V+   +       
Sbjct: 552 HYLLFFTNKGKVYRLKAYEVPELG-RAAKGTPIVNLLNVDQGEKISAVVPIRSTDG---- 606

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                       Q+++  + +G  K+T 
Sbjct: 607 -------------------------------------------GQYLIMATREGTIKKTP 623

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             +F    R G    +       E   L+AV   + + ++IL +  G  IR P  ++R  
Sbjct: 624 LDEFENIRRGGLVAISLR-----ENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSM 678

Query: 874 SRATKGVVIFSTAKD 888
            R   GV        
Sbjct: 679 GRGAAGVKAVDLQGG 693


>gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2]
 gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1]
 gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3]
          Length = 891

 Score =  724 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/903 (38%), Positives = 499/903 (55%), Gaps = 87/903 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV       + +PD   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIAELV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +  +LS    E+I  +M     E +    Y++ AT+ G V++  L  +    
Sbjct: 599 GRDAKGGHVAGLLSFLPDEKIAQVMTLRSYEDAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +                        
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAK------------------------ 750

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                  RT+  ++R   R G GI+A  +S+  E G+LV    V
Sbjct: 751 -----------------------RTAVSEYRQQGRGGLGIKAMALSE--ERGSLVGGLVV 785

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D+II +   G + R  V+E+    R+T GV   S    + V  +    E   V+E  
Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGKDAVSIIALNPEH-AVEEKV 844

Query: 908 STE 910
           + E
Sbjct: 845 TEE 847


>gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 848

 Score =  724 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/839 (41%), Positives = 510/839 (60%), Gaps = 26/839 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE---FPEDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
                         G      A  +  IS  +     AD +  +   KH        SG 
Sbjct: 718 NE-------YWEKSGNEEAEDADIETEISDDL-EDETADNENALPSGKHGVRPSGRGSGG 769

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              +    +   V          E    +  +LT +  G+GKRT   D+    ++ K I
Sbjct: 770 LRGMRLPADGKIVSLIT---FAPEAAQSDLQVLTATANGYGKRTPIADYSRKTKADKAI 825



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 94/239 (39%), Gaps = 14/239 (5%)

Query: 666 IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +  RSG +   L   D ++          ++ L  +          AI   + RN  G+
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 725 RGISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                   ++++     ++    DY + +   + ++   R    +T+     +  S +  
Sbjct: 481 ------DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINP 534

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              +   ++L  + + ++T++  G+ K   + D++   R G+G +A      + I  L  
Sbjct: 535 FGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETL-- 592

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            F  N +D ++  ++ G    + V ++    R ++G     +    + E+V ++  +RE
Sbjct: 593 -FVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVRE 650



 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 170/524 (32%), Gaps = 92/524 (17%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           RE +++    Y +NKA+    +  G  +    L+ V  +   S          ++R+ NA
Sbjct: 265 REAIIIDEIPYQVNKAKLVEKI--GELVREKTLEGVSDLRDESDKSGMRVVIELKRNENA 322

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQ-----TRAILELRLA--RLTGLGRDDIRNEL 477
             + + +  +     + G +    L + Q      + IL   L   R     R   R + 
Sbjct: 323 EVVLNQLYKLTQLQDSFGINMV-ALVDGQPRLLNLKQILAEFLRHRREVVTRRTLFRLKK 381

Query: 478 NSLGIEIKECLDI-LSSRSRLLGIIKQELL--SVKDEL-DTPRRTRIVEGLLDMED---- 529
                 I E   + LS+   ++ +IK+       K++L     R+ +VE +L   D    
Sbjct: 382 ARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRTDLDLR 441

Query: 530 EDCIVREDMVVTVSHLGYV--KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                     + +   GY   +    ++ R   R   G     +  +       I+    
Sbjct: 442 MARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMAKII---D 498

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +   +    + +     L        G    + ++   G+         +++       
Sbjct: 499 YLDILAKPERITQIIREELEETK-TNFGDERRSEINPFGGD-------IADEDLIPQREM 550

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  T  G ++    +D+    R   GK A      D I ++      + ++  T LG+C
Sbjct: 551 VVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKC 610

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
               +  +    GRNS G      I L +G++V ++  V     D               
Sbjct: 611 HWIKVYKL-PEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPED--------------- 654

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                              Q++   + +G  K+     F+  N 
Sbjct: 655 -----------------------------------QYVFFATAQGMVKKVQLSAFK--NV 677

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
             +GI+A  + + +    LV     + +D I+L S+ G  IR  
Sbjct: 678 RSQGIKAIALKEGD---YLVGAAQTSGSDDIMLFSNLGKAIRFN 718



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 59/172 (34%), Gaps = 7/172 (4%)

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
              I         E +  + H    +   + D +                E+  + L + 
Sbjct: 536 GGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVA 595

Query: 797 --EQFILTVSEKGFGKRTSSYDFRISNRS--GKGIR-ATDVSKINEIGALVAVFPVNDND 851
               +++  +  G       Y      R+  G+ I     + +  ++ A++AV    ++ 
Sbjct: 596 NTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ 655

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +   + +G + +V ++  +     ++G+   +  + + +V   +   S+ +
Sbjct: 656 YVFFATAQGMVKKVQLSAFKNV--RSQGIKAIALKEGDYLVGAAQTSGSDDI 705


>gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 922

 Score =  724 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/908 (37%), Positives = 507/908 (55%), Gaps = 108/908 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC
Sbjct: 41  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 100

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR
Sbjct: 101 SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 160

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 161 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 220

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV  G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 221 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 280

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 281 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   VILN LY++T LQ  F  NM+AL    P   +L   ++ +++ + EVV
Sbjct: 340 LVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVV 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKYL  +A +R H+L G   A+  ++EV+ +IR SP+ + AR  LM           
Sbjct: 400 DRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMD---------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I +  D
Sbjct: 450 ----------------LLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYND 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R   I+  E+  + D+    RRTRI+    +M  ED I  E++VVTV+H GY+K
Sbjct: 494 ILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P G
Sbjct: 554 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L L   E+I  ++   + + +    Y+V AT+ G +++ +L+++    
Sbjct: 614 SRDSKGQHVANLLQLGPDEKIQQVLSIHDYDEA---KYLVLATRSGKIKKTRLNEYDSTR 670

Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           + G IA++L                   DE++    C  E++I++ ++ G  V+F     
Sbjct: 671 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 730

Query: 714 RVF-AGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +   GR + GV+ +     A  D ++SM +V                            
Sbjct: 731 TLRSMGRQTAGVQAMKFRGQAGEDLLLSMDVVPAE------------------------- 765

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      +  ++ V+ +GF KRT+  ++R+  R+G G++A
Sbjct: 766 --------------------------SDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVKA 799

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ +    G+LV    V+++DQI+ +   G +IR  V EI+   R T+GV +    K +
Sbjct: 800 INLVEG--RGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKGD 857

Query: 890 RVVSVERI 897
            ++S+ R 
Sbjct: 858 EIISIARN 865



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 24/296 (8%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG------KGRSGVVMRDE- 574
           E +  +           +V  +  G +K+  L+ Y + R+GG      +   G    DE 
Sbjct: 632 EKIQQVLSIHDYDEAKYLVLATRSGKIKKTRLNEYDSTRQGGLIAVRLREIEGAFRTDEE 691

Query: 575 -------DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR--LPIGSPQARGKALINILSLN 625
                  D +    + +    ++  S  G   K       L     Q  G          
Sbjct: 692 GNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDETLRSMGRQTAGVQ-AMKFRGQ 750

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRD 682
            GE +   M     ES  +   +V  T  G  +R  LS++    R+G   K    ++ R 
Sbjct: 751 AGEDLLLSMDVVPAESDSD---LVVVTNEGFAKRTALSEYRLQGRNGYGVKAINLVEGRG 807

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      +++ I+   K G+ +R  ++ I+   GRN+ GV      KGD++IS+A   
Sbjct: 808 SLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIK-RTGRNTQGVTLAKPDKGDEIISIARNA 866

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             D +  E     + + A         +  T    D +     + E     K  E+
Sbjct: 867 EKDDEDAEEDQATEAVDAADAATGAPADTGTDNGTDDATVETKATEPVATSKADEE 922


>gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 858

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/931 (37%), Positives = 514/931 (55%), Gaps = 106/931 (11%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +        E+         I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVH
Sbjct: 1   MADEETPKKTFEDAPVDTRHDKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+++ M   G   +K + KC R+ G+VMG++HPHG++++YDAL R+ Q WSLR  L  G
Sbjct: 61  RRVIYAMYDGGYRPDKGFSKCTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   D  AA RYTE ++   A  ++ D+ +DTV+F+ NYDG  QEP VL +R+PN
Sbjct: 121 QGNFGSPGNDGAAAHRYTETKMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV +G +  + NP+   + L+E     I+GPDFPTGA
Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILG  GI++AY TGRGS+ +R V  +E+    R  +VVTE+PYQVN   +  KIA+LV+
Sbjct: 241 QILGVKGIQDAYRTGRGSVTMRAVVSVEELQ-GRTCLVVTELPYQVNPDNLALKIADLVK 299

Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE+  R G R+VI LKR A A V+LN LY++T LQ  F  NM+A+    
Sbjct: 300 DGKLAGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGI 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++ G + A+   + EV+VRRT++ L KA +RAH+L G   A+  LDEV+ +IR SP
Sbjct: 360 PRTLSIDGFITAWATHQIEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+                            + + E+Q RAIL+++L RL  L
Sbjct: 420 TVEDARTGLIA--------------------------LLEIDEIQARAILDMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDM 527
            R  I +E   + +EI E   I++S  R   I+ +EL  +  +    RRT I+ G   DM
Sbjct: 454 ERQKIIDENEEIELEIVEFKAIIASEQRQRDIVSEELTELLAKYGDDRRTEIMLGFDGDM 513

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E+MVVTV+  GYVKR     YR+Q RGGKG  G  +R +D V  LF+ +TH 
Sbjct: 514 SMEDLIPEEEMVVTVTRGGYVKRTRSDNYRSQHRGGKGVKGAQLRADDIVDHLFVTTTHH 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++ G VY+ K + L  G   A+G+ + N L+L  GE I  I+   + E++    Y
Sbjct: 574 WLLFFTNTGRVYRAKAYELQEGGRDAKGQHVANFLALQPGEEIAQILDIRDYETA---TY 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V AT +G V++  LS++      G IA+ L   DE++S       +D+LL ++ G  +R
Sbjct: 631 LVLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIR 690

Query: 708 FPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F  S   +   GR++ GV G+S  + D+++S ++V  +                      
Sbjct: 691 FTASDEALRPMGRSTSGVMGMSFREDDRLLSASVVPDSG--------------------- 729

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                           ++  V+E GF KRTS+  +R+  R G G
Sbjct: 730 --------------------------------YVFVVTEGGFAKRTSADQYRVQGRGGLG 757

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+   +      G L     V D+D++++V   G ++R  V E+    R T GVV    A
Sbjct: 758 IKVAKLD--GARGDLAGALMVGDHDEVLVVLASGKVVRSSVAEVPAKGRDTMGVVFARFA 815

Query: 887 KDERVVSVERIRES-------EIVDEAESTE 910
            +++++++ R  E        E  D++  +E
Sbjct: 816 AEDKIIAIARNSERNLENKELEAQDDSVPSE 846



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 15/257 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D         +V  +H G VK+  LS Y   R G  G   V +R+ D +    
Sbjct: 614 EEIAQILDIRDYETATYLVLATHNGLVKKTALSEYDTNRSG--GIIAVNLREGDELVSAM 671

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V     VL  S  G   +       +  P  R  + +  +S  + +R+ +    P    
Sbjct: 672 LVENTDDVLLVSRKGMSIRFTASDEAL-RPMGRSTSGVMGMSFREDDRLLSASVVP---- 726

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRD-EILSVETCTQENDILL 698
             ++ YV   T+ G  +R     +    R G      KLD    ++         +++L+
Sbjct: 727 --DSGYVFVVTEGGFAKRTSADQYRVQGRGGLGIKVAKLDGARGDLAGALMVGDHDEVLV 784

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++ +     R+++GV     A  D++I  AI  +++ + + +    +  
Sbjct: 785 VLASGKVVRSSVAEVPAKG-RDTMGVVFARFAAEDKII--AIARNSERNLENKELEAQDD 841

Query: 759 SAQRRLISGDTEEITSL 775
           S    +     +E    
Sbjct: 842 SVPSEIAPAGKDESVDE 858


>gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1]
          Length = 852

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/888 (40%), Positives = 537/888 (60%), Gaps = 93/888 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+ +IY+AL ++AQ+W+ R  L++G GNFGSVDGD  AA RYTE RL K
Sbjct: 72  VGDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL E
Sbjct: 132 ISMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 198 VVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            ++  + +IDN      + ++D +M+I++GPDFPTGA ILGR GI +AY TGRG I +R 
Sbjct: 192 TINAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRA 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++ IE  +  + +IVVTE+PY VNK+ +++ + +LV+ KRI  I D+RDES R+G RVVI
Sbjct: 252 ITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++  +A+VILNQL+++T LQ  F   M+AL    P+   +  +L  ++  +E+VV RR
Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNIKDMLTYYLKHQEDVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY LNKA +RAH+L G  IA+ N+DEV+ IIR S N   A+ +L++R            
Sbjct: 372 TKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------ 419

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AI+++RL  LTGL R+ I NE N L  +I E  +IL+
Sbjct: 420 --------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELIAKIAEYKEILA 465

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++LLG+IK EL ++ D+    RRT I     D+ DE+ I RE++V++++ LGY+KR+P
Sbjct: 466 DENKLLGVIKTELAAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMP 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              ++ Q RGGKG  G+   D D + ++F+ +TH  ++FF+++G VY+ K + +P     
Sbjct: 526 KDTFKVQNRGGKGIKGMNTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRN 585

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG A++N+L L  GE++T I+P     + ++  Y++ ATK+G V++ K+  F  I ++G
Sbjct: 586 ARGVAIVNLLQLLPGEKVTAIIPI----AGFDKKYLMMATKNGIVKKTKIEAFENIRKTG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L+  DE++ V+  + END+ L T  G C+RF    +R   GR S+GVRGI   KG
Sbjct: 642 LAAITLNEGDELIEVKATSGENDVFLVTAKGMCIRFNEECVR-DTGRTSMGVRGIRCDKG 700

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                                                 E    +
Sbjct: 701 -----------------------------------------------------DEVIAMQ 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L ++   +L V+ KG GKRT   +F    R GKG++   +++  + G +V+   V ++  
Sbjct: 708 LDVQGDEMLFVTTKGMGKRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHD 765

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIR 898
           I++++++G +IR+  ++I +  R T GV + +  KD    V SV ++ 
Sbjct: 766 IMMMTNEGIMIRMHCSDITVIGRITSGVKLMNIGKDGNTFVASVAKLA 813


>gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
 gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
          Length = 993

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/945 (38%), Positives = 537/945 (56%), Gaps = 74/945 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE++NSYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G+ GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L++ T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W A ++  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423

Query: 433 LI------------DDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                         +D S   G DG    LS  Q  AILELRL RLTGL +D ++ E   
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +IK+EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S H +VL F+++G VY
Sbjct: 544 LTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE----DESSWNNLYVVFATKHG 655
           + +V+ +P  S  ++G+ ++N+L L+  E IT I+P  +     +           +   
Sbjct: 604 RLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKERLAEFKNFVRSNVA 663

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEI----------LSVETCTQE------------ 693
            +R N + D              +  DE+          L VE  T +            
Sbjct: 664 TLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETVVEFADL 723

Query: 694 -------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                    + + T  G   R     +  F+   S G+R I L + D +I +AI      
Sbjct: 724 AEKMRKNFFVFMATASGTVKRV---ELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQ 780

Query: 747 -----------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
                       + E    +   +A+       T      ++D   + +  +E   +L +
Sbjct: 781 IMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNV 840

Query: 796 KEQF-----------ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +            +L  S  G+GKRT   DF    R GKG+ A   S+ N  G LV  
Sbjct: 841 ASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GELVGA 898

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++++ +++L+SD GTL+R   +E+    R  +GV +     +E
Sbjct: 899 VAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEE 943


>gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 764

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/744 (54%), Positives = 529/744 (71%), Gaps = 10/744 (1%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M E   + + ++E           SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNETPETPENDDEIPAARPVFDGPSVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+  +K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+G
Sbjct: 61  RRIIYSMYEKGITHDKTYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A F+  DL K+TV+F  NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSAAAMRYTESRLDKVASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R G + AY  GRGS+++R  + +E+   DR  I++ EI YQVNKA+M+EKIAE VREK+I
Sbjct: 241 RAGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L  F+ FRE+VV RRT +LL KAR+R+H+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRKFLTYFIDFREDVVARRTAFLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A  I   I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAESILPYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+IL SR R++ II  EL  VKD+   PRRT IV+   DM+DED I
Sbjct: 481 TDELEELAKKIKEYLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  ++ED VT LF+ +THT +LFF+
Sbjct: 541 AREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP GS  ++GKA++NIL +  G  I  IMP   DE+ W++L VVFAT 
Sbjct: 601 TDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTNSGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQ 734
           + +RVF  R SVGVRGI L   ++
Sbjct: 721 TDVRVFNSRASVGVRGIKLNGDEK 744



 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 83/235 (35%), Gaps = 14/235 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F    R+  +    D  DE    +   +E+ ++  T  G   R P+   R    R   
Sbjct: 517 DQFAVPRRTEIVDWSGDMDDE----DLIAREDMVVTVTSGGYIKRTPLVDFRS-QRRGGK 571

Query: 723 GVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GV G+   + D V ++ +      +L    D          +    R   G         
Sbjct: 572 GVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPI 631

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   I      E +  +  ++  +  G  +R    DF    R+GK   A      +
Sbjct: 632 PVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGK--IAMKFEDDH 689

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890
               L+     +++D ++LV++ G  IR P  ++R+  SRA+ GV       DE+
Sbjct: 690 AETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDEK 744



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 74/174 (42%), Gaps = 12/174 (6%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS------EERCQE 792
            +    +    +   Y++ + ++ R++S  ++E+  +K+  +V           +   ++
Sbjct: 479 EVTDELEELAKKIKEYLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDED 538

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +E  ++TV+  G+ KRT   DFR   R GKG+      + +    +  +F  N + Q
Sbjct: 539 LIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEED---VVTTLFVANTHTQ 595

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIV 903
           ++  +  G + ++    +   SR +KG  I +         + ++  +   E  
Sbjct: 596 LLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAE 649


>gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099]
 gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099]
          Length = 846

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/898 (39%), Positives = 511/898 (56%), Gaps = 84/898 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +    + E + + +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSSDVPDPTDVEARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + I GE MG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 61  HEMGVTSRSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSM 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+   +  LL+D+ KDTVDF  NYD   QEP VL + +PN+LVNG  
Sbjct: 121 DGDPAAAPRYTEARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGEV+D  + +ID+PD  ++ LME ++GPDFPTGA I+GR  I +A
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R    +E+    RE+IV+TE+PYQ NKA ++E+IAE V E  I  I+DLR
Sbjct: 241 YKTGRGRIRVRAEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V+E KRGA+ +V+ N+L     L+  F V  +AL   +P+  +L   L+ 
Sbjct: 301 DESDRDGVRIVVECKRGANVEVVKNKLLE-NHLEKTFGVINLALVDGQPQVLSLKETLEE 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A R EVV RR++Y L +A DRAH+L G   AV N ++VV +IR S   + A+  L + 
Sbjct: 360 YIAHRREVVRRRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQE- 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S  Q   I+ ++L  LT +   +I +E   +
Sbjct: 419 -------------------------AYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDV 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+    IL S   LL +IK EL  +KDE D  RRT I+E    +  ED I  E++ V
Sbjct: 454 QAEIERLTSILESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   YVKR+P+S +  Q RGGKG  G  ++++D V  +F  +TH  +L F++ G VY+
Sbjct: 514 VMTEDDYVKRMPISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQ 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P     ARGK+ +NIL L+ GE IT I+   + ++  ++ +V  AT+HG V+R 
Sbjct: 574 LKTYEIPEMGRTARGKSAVNILDLDPGEDITAIV---DTDAFGDDEFVTMATRHGYVKRT 630

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S+F  I  +G IA  L   DE++ VE      D+++ ++ G  +RF    +R    RN
Sbjct: 631 AGSEFDNIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMG-RN 689

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D V  +      D                                   
Sbjct: 690 ARGVNGIDLQGDDAVAGLVATDEGD----------------------------------- 714

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           EQ +LTV++ G+GKRT   ++R  +R GKG+      + N  G 
Sbjct: 715 ----------------EQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERN--GP 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +     V+ +DQ++++S++G ++R  V+EI    R T GV++      + V SV+ + 
Sbjct: 757 VTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVP 814



 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 13/226 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D D    ++ V   +  GYVKR   S +   R    G     +++ D + D+ 
Sbjct: 601 EDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRST--GIIAADLQEGDELVDVE 658

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      ++  S  G   +     +      ARG   +N + L   + +  ++   E + 
Sbjct: 659 VTDGTKDLVIASENGMTIRFDEDEVRAMGRNARG---VNGIDLQGDDAVAGLVATDEGDE 715

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
                 ++  T++G  +R  LS++   +R GK  + + + +    + + +  + ++ +++
Sbjct: 716 QD----LLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTTAKAVSADDQLVM 771

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            ++ GQ VR  +  I     RN++GV  + +  GD V S+ +V  A
Sbjct: 772 MSERGQIVRTRVDEISTVG-RNTMGVIVMDVDDGDAVASVDVVPAA 816


>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
 gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
          Length = 882

 Score =  722 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/913 (38%), Positives = 528/913 (57%), Gaps = 62/913 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       E +  I    + DEM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MVDSTGPG--ESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSV
Sbjct: 59  YELGLSSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP V+ AR P++L+NG 
Sbjct: 119 DSDPPAAMRYTESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGS 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE++D  +A+I +P+I   AL+ I+ GPDFPTG  ILGR GI+ 
Sbjct: 179 SGIAVGMATNIPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQILGRKGIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           AY TGRGS+ +RGV+ IE        DR+ +++TE+PYQ NKA+++E+IAELV +K++  
Sbjct: 239 AYTTGRGSVTMRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDG 298

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDESDR G R+V EL+R A   V+LN L++ T LQS FS +++AL   +P   TL 
Sbjct: 299 ISDIRDESDRDGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGEPVLLTLR 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  F+ FR E + RRT+YLL KA +R H L+GL +A+  LD ++ +IR + +  TAR 
Sbjct: 359 QMLHVFLDFRIETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARY 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L                               LSE+Q  AIL+++L RLT L  D IR 
Sbjct: 419 QLQY--------------------------FHGLSEIQADAILQMQLRRLTALEADKIRF 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++    DIL+ R R+L +IK+EL  + +  ++PRRT+I++    +ED D I  
Sbjct: 453 EHEDLVQKVNNYRDILAHRDRVLELIKEELKLLHNRYNSPRRTKILDLEGSLEDIDLIAN 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + A  RG +G++G   + ++ V      + H ++L FS  
Sbjct: 513 ERSVVLLTENGYLKRMPVSEFEATNRGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y    +R+P+ S  A+G  ++ IL + + E IT+++     E   N + ++  T  G
Sbjct: 573 GISYALPAYRVPVSSRSAKGTPVVQILPIPREEEITSLLSVSAFE---NEVQLLMLTNSG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +  G  + F I    +
Sbjct: 630 FIKRTRLSAFSNIRSNGLIAINLELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEEL 689

Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GVR ++L   D ++SM ++    AD  +    +     +R  + G T   + 
Sbjct: 690 RPLGRNARGVRAMNLRDNDSLVSMDVLPAELAD--QVANSVDSGVEEREELGGGTGSAS- 746

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  S  G GKR     FR+  R+G G+RA     
Sbjct: 747 -------------------PAAGPWVLVASASGLGKRVPVNQFRLQRRAGMGLRAMRF-- 785

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +   LV +  +   ++++LVS+KG ++R+  + I   SRA  GV +      + +  +
Sbjct: 786 RRKGDVLVGLKVLGSREELLLVSEKGVIVRMQADLIPQQSRAATGVRLQKLDDGDHLAEI 845

Query: 895 ERIRES-EIVDEA 906
             I    E  D+ 
Sbjct: 846 VLIPHVLEEEDDP 858



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 36/263 (13%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +        E  ++ +++ G++KR  LS +   R    G   + +   D +  +
Sbjct: 604 EEEITSLLSVSAFENEVQLLMLTNSGFIKRTRLSAFSNIRS--NGLIAINLELGDALRWV 661

Query: 581 FIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            +     SVL  S  G    ++     L      ARG   +  ++L   + + ++   P 
Sbjct: 662 RLALPGDSVLIGSIQGMTIHFRIIDEELRPLGRNARG---VRAMNLRDNDSLVSMDVLPA 718

Query: 639 D-------------------------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
           +                          S     +V+ A+  G  +R  ++ F    R+G 
Sbjct: 719 ELADQVANSVDSGVEEREELGGGTGSASPAAGPWVLVASASGLGKRVPVNQFRLQRRAGM 778

Query: 673 --KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             +        D ++ ++      ++LL ++ G  VR     +     R + GVR   L 
Sbjct: 779 GLRAMRFRRKGDVLVGLKVLGSREELLLVSEKGVIVRMQA-DLIPQQSRAATGVRLQKLD 837

Query: 731 KGDQVISMAIVLHADADYDERIC 753
            GD +  + ++ H   + D+   
Sbjct: 838 DGDHLAEIVLIPHVLEEEDDPNV 860


>gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08]
          Length = 891

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/903 (38%), Positives = 500/903 (55%), Gaps = 87/903 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV       + +PD   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIAELV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +  +LS    E+I  +M     E +    Y++ AT+ G V++  L  +    
Sbjct: 599 GRDAKGGHVAGLLSFLPDEKIAQVMTLRSYEDAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+   + D E++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +                        
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAK------------------------ 750

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                  RT+  ++R   R G GI+A  +S+  E G+LV    V
Sbjct: 751 -----------------------RTAVSEYRQQGRGGLGIKAMALSE--ERGSLVGGLVV 785

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D+II +   G + R  V+E+    R+T GV   S    + V  +    E   V+E  
Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGKDAVSIIALNPEH-AVEEKV 844

Query: 908 STE 910
           + E
Sbjct: 845 TEE 847


>gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 836

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/901 (36%), Positives = 519/901 (57%), Gaps = 97/901 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I D+M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ W++R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ K+TVD   N+D +  EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A + N DI +D LME I+ PDFPTG +I G  G++ A+ TGRG +VIR
Sbjct: 183 PHNLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +H E+    R+ IVVTE+PYQVN   M E+ + LV+E ++  +AD+ D++ + G R+V
Sbjct: 243 AKAHFEEV-NGRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELK+ A  +V+LN L+++T+LQS FSVN +AL   +P++  L  ++  FV  R +VV R
Sbjct: 302 YELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGRPQQLNLKDLIYHFVEHRHDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL L+L R+  L     + E   L  +I +  
Sbjct: 406 -------------DLMTEFELTEIQAEAILALQLRRINKLLILQTKEEYEQLLAQIIDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K +    RR+ I     D+  ED I  + +V+T+S+ GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDIIPDDQVVITISNAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  ++ Y+ Q RGG G+     RD+DF+  LFI + H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTSVNEYKTQARGGVGQKASATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G    +G+A+ N++++   + +  ++   +  ++   N+ YV+ ATK G +++  L  + 
Sbjct: 573 GGKNTKGRAIQNLINIEPDDLVKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G +A+ +   DE+L     +  + I+L  K G+ +RFP   +R    R+  GVRG
Sbjct: 633 RPRQNGIVAITIKEDDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRAVG-RSGSGVRG 691

Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           ISL +  D+VI M  + +   +                                      
Sbjct: 692 ISLDSDKDEVIGMIAIENPLEE-------------------------------------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                         +L VSE G+GKRT   +       +RI+NR GKG++   +++  + 
Sbjct: 714 -------------TVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + D +++++  G  IR+PV+ +R+  RAT+GV + +   ++ + +V ++ 
Sbjct: 759 GNLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRATQGVRLINIKGNDSIAAVAKVM 818

Query: 899 E 899
           +
Sbjct: 819 K 819


>gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 834

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/887 (40%), Positives = 541/887 (60%), Gaps = 86/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K
Sbjct: 2   SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL++G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K ++ L+DD+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++DG +A+IDNP++    LME I+GPDFPTG +I G+ GI++AY TGRG + +RG 
Sbjct: 182 NLGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NK+ ++E+IA+LV++KR+  I DLRDESDR G RVVIE
Sbjct: 242 VEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   ++ILN+LY+YT LQ+ F + M+AL    P    L  IL  ++  R EVV RRT
Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNAPRVLNLKEILHEYIKHRFEVVTRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L+KA  RAH+L G  IA+ N+D ++ IIR S +   AR  L+++             
Sbjct: 362 KFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+VQ RAIL+++L RLTGL R  I  E   +   I E  +ILS 
Sbjct: 409 -------------YAFSDVQARAILDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  IIK+ELL +K++ +  RRT I    +++  ED I  E++++T+++ GYVKR+ +
Sbjct: 456 DSKIYEIIKEELLYLKEKYNDNRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEV 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG +     ++DFV  +   S   +++ F++ G V+  KV+ +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK + NI+   + E+I  ++   +         VVF TK G +++  L +F  IN SG 
Sbjct: 576 RGKLMSNIIRTREDEKIRAVIKTRDFSKENE---VVFVTKEGLIKKTNLDEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A+KL   D+I+ V    + +   + + TK G  +RF    +R   GR+++GV+ I+L  
Sbjct: 633 KAIKLKEEDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRP 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD ++S  ++                                                  
Sbjct: 692 GDSIVSALLI-------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K +E  ILTV+E G+GKRT   ++ +  RSGKG+     +   + GA+V+V PV + +
Sbjct: 702 --KDEEGSILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNA--KTGAVVSVLPVTEGE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++ ++  G +IR+P++ I +  RAT+GV+I      E+VVS+ R++
Sbjct: 758 ELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVK 804



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 108/260 (41%), Gaps = 16/260 (6%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RTR  E +  +       +E+ VV V+  G +K+  L  ++       G   + +++ED 
Sbjct: 585 RTREDEKIRAVIKTRDFSKENEVVFVTKEGLIKKTNLDEFK--NINNSGLKAIKLKEEDD 642

Query: 577 VTD--LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           +    L        V   +  G+  +     +        G   +  ++L  G+ I + +
Sbjct: 643 IIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRPTGRDTMG---VKSITLRPGDSIVSAL 699

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCT 691
              ++E S     ++  T++G  +R ++ ++    RSGK  + +    +   ++SV   T
Sbjct: 700 LIKDEEGS-----ILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNAKTGAVVSVLPVT 754

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           +  +++  T  G  +R P+       GR + GV  + +   ++V+S+  V   + +    
Sbjct: 755 EGEELMAITSSGIVIRMPL-DTIALYGRATQGVIIMKVDGAEKVVSITRVKSEEEEEISE 813

Query: 752 ICYMKHMSAQRRLISGDTEE 771
           +  ++  +    +   +T+E
Sbjct: 814 LNSIEDETNIEEVEIVETKE 833


>gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 847

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 495/915 (54%), Gaps = 101/915 (11%)

Query: 3   EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           E II SD     E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++
Sbjct: 13  EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   N  Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNF
Sbjct: 73  YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS     PAA RYTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+N
Sbjct: 133 GSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV D     + NP+   + L+    + I+GPDFPTGA ILG
Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI+  Y TGRGSI  R V ++E+    R  +V TE+PYQVN   +  KIA+LV++ ++
Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE SDR G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   
Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++ G +  ++A + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E 
Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM                            + + EVQ  AIL L+L RL  L R  
Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  ++ +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED 
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED+VVT++  GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF
Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V AT
Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVS---SFADKDYLVLAT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVR 707
           + G V++ +L+D+      G IA+KL        D+++S       +D++L ++ GQ +R
Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702

Query: 708 FPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+                                       
Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRAD---------------------------------- 728

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                               E    ++   E  +  V+E G+ KRT+  ++R+  R G G
Sbjct: 729 -------------------DELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRGGLG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++ +    G LV      ++ +++++   G ++R  V+E+    R T+GV+     
Sbjct: 770 IKVANLVEA--RGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAD 827

Query: 887 KDERVVSVERIRESE 901
           + ++V+++    +++
Sbjct: 828 EGDKVIAITLNVDND 842



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  +        +D +V  + LG+VK+  L+ Y   R G  G   + +R++     D 
Sbjct: 621 ERIAQVLQVSSFADKDYLVLATRLGFVKKTRLTDYDTNRTG--GLIAIKLREDSAGEADQ 678

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +      ++  S  G   +          P  R  + +  +     + + T+   
Sbjct: 679 LVSACLADATDDLILVSRHGQSLRFNACD-EQLRPMGRATSGVTGMRFRADDELLTMDVV 737

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
             +        +   T+ G  +R  LS++    R G   K+A  +++R +++      ++
Sbjct: 738 RPEAD------LFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEED 791

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +++L+    G+ VR  +  +    GRN+ GV      +GD+VI++ + +  D   ++
Sbjct: 792 SEVLVIMAGGKIVRSRVDEV-SRTGRNTQGVIFSRADEGDKVIAITLNVDNDPQLED 847


>gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211]
 gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211]
          Length = 818

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/900 (38%), Positives = 518/900 (57%), Gaps = 95/900 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
                V IT+E++ +++ YA+NVI+ RA+PD+RDGLKPVHRRI++ M+Q G+  N+K+ K
Sbjct: 2   SSTLPVDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + GEVM KYHPHG++ IYDA+ R+ Q W++R  +++ QGNFGS+DGD  AA RYTE 
Sbjct: 62  SAAVVGEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL K+TVD +PNYD +  EP VL +  PN+LVNG  GIAVGMATNIP H
Sbjct: 122 RMTKLAEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLD---------ALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NL E+V+G +++ID P    +          LM  ++GPDFPTG  I  R+GI++AYATG
Sbjct: 182 NLTEIVNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGGRI-SRSGIRDAYATG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
              + +RG + I      R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESD
Sbjct: 241 HAGLKVRGKARI-DEKNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESD 299

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R +  R+V+ELKRGA   ++LNQLY+YT LQ+ F+V  +++   +P+   L+  ++ F+ 
Sbjct: 300 RKEPVRIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIVNGEPKVLPLLDTMRYFLE 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +VV RRT Y L KA++RAH+L GL  A+ ++DEV+ +IR S     AR  LM R   
Sbjct: 360 HRADVVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTR--- 416

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ +AIL++RL RL GL R+ ++ E N L   
Sbjct: 417 -----------------------FQLTDVQAQAILDMRLQRLVGLEREKLQGEYNELMTL 453

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I     IL     L   IK+EL  ++D     RR+ I +   D+  ED I  EDMV+T++
Sbjct: 454 IDRLKAILGDEKLLWREIKKELKDIRDRYGDERRSTITQLEEDISKEDLIAVEDMVITMT 513

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR  L  YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G ++ EK+
Sbjct: 514 RAGYLKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKI 573

Query: 604 WRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           + LP     A+G  + N+L  L + E + +++   + + + +    VFATK G +++ ++
Sbjct: 574 YDLPEAGRDAKGTHIKNLLPGLRENESVASVLAIKDFDEAGS---FVFATKRGMIKKTQI 630

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            D+  I  +G IA+ L   D ++ V      + I+L T  GQ +RF  + +R   GR + 
Sbjct: 631 RDYGNITSAGLIALNLQDDDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVR-DTGRATQ 689

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV GI L  GD V+SMA+V   D D +                                 
Sbjct: 690 GVIGIRLRDGDHVVSMAVVPGDDEDSE--------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L +SE G GKRT   D+    R G G+   DV++  + G LV
Sbjct: 717 -----------------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTE--KTGKLV 757

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A+  V  ++++++++ KGT+IR  V E+R+  R  +GV I +    + V+S   IR+ + 
Sbjct: 758 ALARVAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQGVKIINLGDGDCVISAFPIRKEDE 817



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 104/305 (34%), Gaps = 66/305 (21%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYVVFATKHGNVRRNKLSDF- 665
            +   K L +I      ER +TI    ED S  +       V+  T+ G ++R KL  + 
Sbjct: 468 WREIKKELKDIRDRYGDERRSTITQLEEDISKEDLIAVEDMVITMTRAGYLKRTKLDAYR 527

Query: 666 -IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  G    KL   D    V   +  + +L  T  G+     I  +   AGR++ G 
Sbjct: 528 AQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDL-PEAGRDAKGT 586

Query: 725 RGISL----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
              +L     + + V S+  +   D                                   
Sbjct: 587 HIKNLLPGLRENESVASVLAIKDFD----------------------------------- 611

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +    +  +++G  K+T   D+   N +  G+ A ++   +    
Sbjct: 612 ---------------EAGSFVFATKRGMIKKTQIRDY--GNITSAGLIALNLQDDD---G 651

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L+ V    D D I+L +  G  +R   NE+R   RAT+GV+       + VVS+  +   
Sbjct: 652 LIGVGIQRDGDHIVLATSDGQAMRFGANEVRDTGRATQGVIGIRLRDGDHVVSMAVVPGD 711

Query: 901 EIVDE 905
           +   E
Sbjct: 712 DEDSE 716


>gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 847

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 495/915 (54%), Gaps = 101/915 (11%)

Query: 3   EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           E II SD     E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++
Sbjct: 13  EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   N  Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNF
Sbjct: 73  YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS     PAA RYTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+N
Sbjct: 133 GSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV D     + NP+   + L+    + I+GPDFPTGA ILG
Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI+  Y TGRGSI  R V ++E+    R  +V TE+PYQVN   +  KIA+LV++ ++
Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE SDR G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   
Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++ G +  ++A + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E 
Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM                            + + EVQ  AIL L+L RL  L R  
Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  ++ +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED 
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED+VVT++  GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF
Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V AT
Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVS---SFTDKDYLVLAT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVR 707
           + G V++ +L+D+      G IA+KL        D+++S       +D++L ++ GQ +R
Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702

Query: 708 FPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+                                       
Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRAD---------------------------------- 728

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                               E    ++   E  +  V+E G+ KRT+  ++R+  R G G
Sbjct: 729 -------------------DELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRGGLG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++ +    G LV      ++ +++++   G ++R  V+E+    R T+GV+     
Sbjct: 770 IKVANLVEA--RGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAD 827

Query: 887 KDERVVSVERIRESE 901
           + ++V+++    +++
Sbjct: 828 EGDKVIAITLNVDND 842



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  +        +D +V  + LG+VK+  L+ Y   R G  G   + +R++     D 
Sbjct: 621 ERIAQVLQVSSFTDKDYLVLATRLGFVKKTRLTDYDTNRTG--GLIAIKLREDSAGEADQ 678

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +      ++  S  G   +          P  R  + +  +     + + T+   
Sbjct: 679 LVSACLADATDDLILVSRHGQSLRFNACD-EQLRPMGRATSGVTGMRFRADDELLTMDVV 737

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
             +        +   T+ G  +R  LS++    R G   K+A  +++R +++      ++
Sbjct: 738 RPEAD------LFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEED 791

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +++L+    G+ VR  +  +    GRN+ GV      +GD+VI++ + +  D   ++
Sbjct: 792 SEVLVIMAGGKIVRSRVDEV-SRTGRNTQGVIFSRADEGDKVIAITLNVDNDPQLED 847


>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 818

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/899 (40%), Positives = 522/899 (58%), Gaps = 86/899 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  +  +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  ++
Sbjct: 2   EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KC RI G+V+GKYHPHG+ +IYDAL R+AQD+S+R  ++  QGNFGSVDGDPPAA R
Sbjct: 62  AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ + A  +L D+ K+TVD+ PNYD S QEP+VL   +P +L NG  GIAVGMATN
Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV    VA I++ +I +D LM+ I+GPDFPTG +I GR GIK A+ TG+G I 
Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIFGRRGIKQAFRTGKGKIT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE T   +++I+VTEIPY VNKA ++ KIA+LV+EKRI  I+DLRDESDR G R
Sbjct: 242 VRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG    V+LNQL+ +T+LQ  F+V  +AL    P++  L  ++  FV  R EVV
Sbjct: 302 IVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGMPKQLNLKELVHYFVRHRVEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L GL IA+ N+DEVV+II+ S +   AR  LM+R         
Sbjct: 362 TRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL +LT L    I  EL  +   I    D
Sbjct: 413 -----------------FKLSERQSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKD 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +LSS  ++LG+++ E   +  +    R+T IV + + ++  ED I +EDMVV VS+ G++
Sbjct: 456 LLSSEQKILGVVRDETEEIAQKYGDDRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP+S YR Q RGGKG S   + +EDF+  LFI STH  +LF ++ G  Y  KV  +P 
Sbjct: 516 KRVPVSSYRNQGRGGKGSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  +RG  +  +L ++  E ITTI+   E        Y+  AT  G V++ K SDF   
Sbjct: 576 GSRASRGTHIKALLEISANEDITTIVSLQEFSEE---HYLFMATARGIVKKVKTSDFRNA 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+KLD+ D +++      +++I++ ++ G  +RF    +R    R S GV GI 
Sbjct: 633 RTRGIIAIKLDNGDTLITAVLTRGDSEIVIVSRNGNALRFHEDQVRAMG-RASRGVTGIR 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++  +  V   +                                           
Sbjct: 692 LQSDDELAGILRVEDNEK------------------------------------------ 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L +SE G GKR     F +  R  +G  A   S+ +  G +V V  V 
Sbjct: 710 -----------MLLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERS--GEIVGVLSVL 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + D ++ ++ +G  I++ V+++ +  +  +GV I +    + VV V R+   +  +E +
Sbjct: 757 EEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARVMNDKDEEEDQ 815


>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 812

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/884 (40%), Positives = 544/884 (61%), Gaps = 86/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY++T LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++L+ 
Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NSKIYEIMKKELLEIKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE+++  +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVSDTIVIKEFLPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K+   D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDAVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++ ++  G +IR  ++EI    RAT+GV I   A +E+V ++ 
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801


>gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 899

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/882 (43%), Positives = 535/882 (60%), Gaps = 53/882 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+I NPD+ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLALIQNPDLTILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L  R W   +++ +++
Sbjct: 366 TVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLE 425

Query: 433 --------LIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                     D  +  +G  DG  Y+SE Q +AIL+LRL +LTGL  + I  E  +L   
Sbjct: 426 KAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLEL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL++  RL+ +I+ EL+ +K++    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLYILATPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT I+P  E      + Y+  AT  G V++  L+
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVREYAE---DKYIFMATAFGTVKKTPLT 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF------- 716
            + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +            
Sbjct: 663 AYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNP 722

Query: 717 -----------------AGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERIC 753
                             GR + GVRGI +A   +V+S+ +      +L    +   +  
Sbjct: 723 VLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRVVSLIVPKTDGAILTVTENGYGKRT 782

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            ++   ++ R   G      S +N + V     ++           I+ +S +G   RT 
Sbjct: 783 QLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDD--------NDEIMIISNRGTLVRTR 834

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAV--FPVNDNDQI 853
             +     R+ +G+         ++  L  +    V ++D I
Sbjct: 835 VNEVSTVGRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLI 876


>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 812

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/884 (40%), Positives = 544/884 (61%), Gaps = 86/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G RVVIE
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++LS 
Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL +KD+ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NSKIYEIMKKELLELKDKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE+++  +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVSDTIVIKEFLPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K+   D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDAVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++ ++  G +IR  ++EI    RAT+GV I   A +E+V ++ 
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801


>gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
 gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
          Length = 808

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/890 (39%), Positives = 517/890 (58%), Gaps = 87/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ MM  G+  N K+ K 
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+++IYDA+ R+ Q W++R  ++  QGNFGS+DGDPPAA RYTE R
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL DL K+T+  +PNYD + +EP VL A  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID P++ L  +ME ++GPDFPTG  I  + GI++AY TG  S+ +RG +
Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRI-SKQGIQDAYTTGHASLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE    +R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  R+VIE
Sbjct: 242 RIE-EKNNRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQS F+V  +++   +P    LI  ++ F+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVINLSIVNGEPRVLPLIDTMRYFLDHRRDVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAH+L GL  A+ ++DEV+ +IR S     AR  LM R             
Sbjct: 361 QYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMAR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL++RL RL GL R+ + +E + L   I +   IL  
Sbjct: 408 -------------FELSEPQAQAILDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+  ++D     RR+ I     D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 EKLLWREIKKEIREIRDRYGDERRSTISALEEDISKEDLIAVEDMVITMTEAGYLKRTTL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G  G  +R+ED  T +F+ STH  +LFF+  G ++ EK++ LP  +  A
Sbjct: 515 DAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARDA 574

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N+L  L   E I ++      E   +    VFATK+G V+R  ++D+  I  +G
Sbjct: 575 KGSHIRNLLPSLRDDENIASVQSIRGFEEEGS---FVFATKNGMVKRTLITDYGNITSAG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++SV      +DI+L T+ G+ +RF    +R   GR + GV GI L   
Sbjct: 632 LIAINLQEDDELISVGIVKNGSDIVLATRGGKAMRFAADEVR-DTGRATQGVIGIRLKGD 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SMA+V                                                   
Sbjct: 691 DRVVSMALVPAD------------------------------------------------ 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  +L +SE G GKRT   D+    R G+G+   DV++  + G LV +  V+  ++
Sbjct: 703 ---TESELLAISEHGLGKRTPVSDYPSKGRGGQGVITLDVTE--KTGRLVTLARVDGGEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++++  G +IR  V E+R+  R  +GV + + +  +RV+S   IR+ + 
Sbjct: 758 LMVLTQGGLVIRTRVEEVRVTGRNAQGVKVINLSDKDRVISAFPIRKEDE 807



 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 108/300 (36%), Gaps = 58/300 (19%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYVVFATKHGNVRRNKLSDF- 665
            +   K +  I      ER +TI    ED S  +       V+  T+ G ++R  L  + 
Sbjct: 459 WREIKKEIREIRDRYGDERRSTISALEEDISKEDLIAVEDMVITMTEAGYLKRTTLDAYR 518

Query: 666 -IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  G    KL   D    V   +  + +L  T  G+     I  +   A R++ G 
Sbjct: 519 AQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDL-PEAARDAKGS 577

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
              +L                                          + SL++D ++   
Sbjct: 578 HIRNL------------------------------------------LPSLRDDENIASV 595

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            S    +E    E   +  ++ G  KRT   D+   N +  G+ A ++ + +E   L++V
Sbjct: 596 QSIRGFEE----EGSFVFATKNGMVKRTLITDY--GNITSAGLIAINLQEDDE---LISV 646

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V +   I+L +  G  +R   +E+R   RAT+GV+      D+RVVS+  +      +
Sbjct: 647 GIVKNGSDIVLATRGGKAMRFAADEVRDTGRATQGVIGIRLKGDDRVVSMALVPADTESE 706


>gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
 gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
          Length = 809

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/890 (40%), Positives = 522/890 (58%), Gaps = 86/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+Q G+  N+K+ K 
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+A+IYDA+ R+ Q W++R  L++ QGNFGS+DGDPPAA RYTE R
Sbjct: 63  AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L DL K+TV  +PNYD +  EP VL +  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID PDI LD +M  + GPDFPTG  I  R GI+ AYATG   + +RG +
Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRI-SRQGIREAYATGHAGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            I      R QIV+TEIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  R+V+E
Sbjct: 242 RI-DEKNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQS F+V  +++   +P    LI  ++AF+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVMNLSIVNGEPRVLPLIDTMRAFLDHRRDVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAH+L GL  A+ ++DEV+  IR S     AR  LMQR             
Sbjct: 361 QYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q +AIL++RL RL GL R+ +  E + L   I     IL  
Sbjct: 408 -------------FTLTEIQAQAILDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+  ++D     RR+ I +   D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 ERLLWREIKKEIRDIRDRYGDERRSTITDLEDDISKEDLIAVEDMVITMTKAGYLKRTKL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP     A
Sbjct: 515 DAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N++  L + E I +++     +        VFATK G V++  ++++  I  +G
Sbjct: 575 KGTHIRNLIPALREDENIASVLSV---KGFNEPGSFVFATKRGMVKKTLITEYGNITSAG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V+     +D++L TK GQ +RF  + +R   GR + GV GI L +G
Sbjct: 632 LIAINLQPGDELIGVDIQRDGDDVVLATKEGQAMRFAATEVR-DTGRATQGVIGIRLREG 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SMA+V   +   +                                           
Sbjct: 691 DEVVSMALVPSGEESSE------------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L +SE G GKRT   D+    R G G+   DV+  ++ G LVA+  V  N++
Sbjct: 708 -------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVT--DKTGKLVALTHVAGNEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++++++KGT+IR  V E+R+  R  +GV + +  + +RV+S   IR  + 
Sbjct: 759 LMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINLGEKDRVISAFPIRREDE 808



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 58/301 (19%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYVVFATKHGNVRRNKLSDF- 665
            +   K + +I      ER +TI    +D S  +       V+  TK G ++R KL  + 
Sbjct: 459 WREIKKEIRDIRDRYGDERRSTITDLEDDISKEDLIAVEDMVITMTKAGYLKRTKLDAYR 518

Query: 666 -IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  G    +L   D    V   +  + +L  T  G+     I  +   AGR++ G 
Sbjct: 519 AQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDL-PEAGRDAKGT 577

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
              +L                                          I +L+ D ++   
Sbjct: 578 HIRNL------------------------------------------IPALREDENIASV 595

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +S +   E        +  +++G  K+T   ++   N +  G+ A ++   +E   L+ V
Sbjct: 596 LSVKGFNE----PGSFVFATKRGMVKKTLITEY--GNITSAGLIAINLQPGDE---LIGV 646

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
               D D ++L + +G  +R    E+R   RAT+GV+     + + VVS+  +   E   
Sbjct: 647 DIQRDGDDVVLATKEGQAMRFAATEVRDTGRATQGVIGIRLREGDEVVSMALVPSGEESS 706

Query: 905 E 905
           E
Sbjct: 707 E 707


>gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 847

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/915 (36%), Positives = 495/915 (54%), Gaps = 101/915 (11%)

Query: 3   EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           E II SD     E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++
Sbjct: 13  EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   N  Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNF
Sbjct: 73  YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS     PAA RYTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+N
Sbjct: 133 GSPGNLGPAAPRYTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV D     + NP+   + L+    + I+GPDFPTGA ILG
Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI+  Y TGRGSI  R V ++E+    R  +V TE+PYQVN   +  KIA+LV++ ++
Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE SDR G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   
Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++ G +  ++A + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E 
Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM                            + + EVQ  AIL L+L RL  L R  
Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  ++ +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED 
Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED+VVT++  GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF
Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P G   ++G+ + N+L+    ERI  ++      S  +  Y+V AT
Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVS---SFADKDYLVLAT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVR 707
           + G V++ +L+D+      G IA+KL        D+++S       +D++L ++ GQ +R
Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702

Query: 708 FPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           F     ++   GR + GV G+                                       
Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRAD---------------------------------- 728

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                               E    ++   E  +  V+E G+ KRT+  ++R+  R G G
Sbjct: 729 -------------------DELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRGGLG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++ +    G LV      ++ +++++   G ++R  V+E+    R T+GV+     
Sbjct: 770 IKVANLVEA--RGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAV 827

Query: 887 KDERVVSVERIRESE 901
           + ++V+++    +++
Sbjct: 828 EGDKVIAITLNVDND 842



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 97/237 (40%), Gaps = 18/237 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  +        +D +V  + LG+VK+  L+ Y   R G  G   + +R++     D 
Sbjct: 621 ERIAQVLQVSSFADKDYLVLATRLGFVKKTRLTDYDTNRTG--GLIAIKLREDSAGEADQ 678

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +      ++  S  G   +          P  R  + +  +     + + T+   
Sbjct: 679 LVSACLADATDDLILVSRHGQSLRFNACD-EQLRPMGRATSGVTGMRFRADDELLTMDVV 737

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
             +        +   T+ G  +R  LS++    R G   K+A  +++R +++      ++
Sbjct: 738 RPEAD------LFVVTEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEED 791

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +++L+    G+ VR  +  +    GRN+ GV      +GD+VI++ + +  D   ++
Sbjct: 792 SEVLVIMAGGKIVRSRVDEV-SRTGRNTQGVIFSRAVEGDKVIAITLNVDNDPQLED 847


>gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
 gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
          Length = 815

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/895 (38%), Positives = 520/895 (58%), Gaps = 87/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  + 
Sbjct: 6   TKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA R
Sbjct: 66  PTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I+
Sbjct: 186 MPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G 
Sbjct: 246 VRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGL 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +V
Sbjct: 306 RVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S +P+TA+  LM+R        
Sbjct: 366 VTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 +VQ +AI++++L RLT L  +D+R EL  L + I    
Sbjct: 418 ------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLK 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY
Sbjct: 460 DLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGY 519

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  + 
Sbjct: 520 IKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQ 579

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG  + ++LS++  E IT ++   E +   +  Y++ AT  G V++    +F  
Sbjct: 580 EASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFAN 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G IA+KLD  D+++S      +++I+L T+ GQ +R     IR   GR+S GV GI
Sbjct: 637 AKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTGI 695

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+  D++     V                                              
Sbjct: 696 KLSSEDELTGALRVTE-------------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     Q +L ++E G+GKR    +F    R   G R   +S+  + G +V +  V
Sbjct: 712 ---------NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSE--KTGEVVGLLTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            D+D+++ ++ +G  IR+ V+ +    R+ +GV I      + ++ ++ +   E 
Sbjct: 761 FDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDEE 815


>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 813

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/896 (39%), Positives = 553/896 (61%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A ++NP+I +  L +II+GPDFPTGA ILG+ GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR ++A+++LN LY+ T L++ F +  +AL    P+   L  ++K +V  +++VV
Sbjct: 303 IVIEVKRDSNANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   ++         
Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +L+ +I++E+L +K++    RRT+IV    + + E+ I +ED++++++H GY+K
Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY  K + +P  
Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG+A+IN++SL+  E+IT IM             +VF T++G +++     F  I 
Sbjct: 577 SRQSRGQAIINLISLSSDEKITDIMELSNLNEKSQ---LVFQTENGKIKKTDAELFTNIQ 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L+  D ++S+    +  DI++TTK G  ++F  S IR    RN+ GVR I L
Sbjct: 634 RNGIIAISLEDGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSMG-RNARGVRAIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+SM IV                                                
Sbjct: 693 GEDDKVVSMNIVED---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E +++ V+  GFGK+TS  +F   NR GKG+R   +++  +   +VA  P N 
Sbjct: 707 -------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTKDVVATLPANL 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +D I++VS KG +IR+   +I    R T GV + +    ++ +VSV +  E    +
Sbjct: 758 DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDYIVSVTKYYEETSEE 813


>gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
 gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
          Length = 838

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/906 (37%), Positives = 513/906 (56%), Gaps = 91/906 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E        E   +  + I  E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEITTP----EGGILIPIPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+ ++    KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++
Sbjct: 57  EEKGLRYSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GDP AA RYTE ++ K A  +++D+ K+TVDF  N+D S +EP VL A++P +L NG  
Sbjct: 117 GGDPAAAYRYTEAKMAKIAESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL E+     A IDNP+I +D L + I+GPDFPTG  I G+ GI+ A
Sbjct: 177 GIAVGMATNMPPHNLREIASAISAYIDNPEITIDELCKHIKGPDFPTGGTIFGKKGIRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++RG   IE     +E I+ TE+PYQVN   ++ +I EL R K I  IA++ 
Sbjct: 237 YKTGRGKILVRGRFTIEVDKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVN 296

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE SDR G R+VIELKRGA   V+LNQL+  T+LQS F V  +AL   +P+  TL  +++
Sbjct: 297 DETSDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVEGRPQTLTLKDLVR 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV RRT++ L KA +RAH+L  L +A+ N+DEV+ IIR S +  TA+  LM+
Sbjct: 357 CFVNHRIEVVTRRTRFDLRKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMK 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                              EVQ++AI++++L RLT L   D+R EL  
Sbjct: 417 R--------------------------FGFDEVQSQAIVDMQLKRLTNLEIKDLRKELEE 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDM 538
           L I I    D+L    ++  ++K E   + D+    RRT IV + + ++  ED I +E+M
Sbjct: 451 LEILIAHLKDLLEHPEKIRALVKDETNEIADKFGDERRTDIVADEVEELNIEDLIQKEEM 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+ +S+LGY+KR+P+S Y++Q RGGKG +   + ++DF+  +F  STH  ++F ++ G  
Sbjct: 511 VILISNLGYIKRIPVSAYKSQNRGGKGSNSANLAEDDFIDQIFTASTHDYIMFITNEGKA 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV  +P  S  +RG  + ++LS++  E IT ++   E     ++ Y++ AT  G V+
Sbjct: 571 YWLKVHEIPEASRTSRGSHIKSLLSVSGDEEITAVVSLKE---FSDSTYLLMATAAGVVK 627

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +    +F      G IA+KLD  D+++S    T +++I+L T+  Q +R     IR    
Sbjct: 628 KVTTDNFQNAKTRGIIAIKLDDGDKLVSAILTTGKDEIMLITRHAQALRMTEEEIRPLG- 686

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GV GI LA+GD++     V                                     
Sbjct: 687 RASRGVAGIKLAQGDELTGALRVAD----------------------------------- 711

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                              Q +L ++E G+GKR    +F    R+  G R   +S+  + 
Sbjct: 712 ------------------NQKMLIMTENGYGKRVEFSEFTPHGRATGGQRIYTLSE--KT 751

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V +  V D+D+++ ++ +G  IRV V+ I I  R+ +GV +      + ++ ++ + 
Sbjct: 752 GEVVGLLTVLDDDEVVCITGQGKTIRVNVDSISIMGRSAQGVRVLDIESPDILIGLDVVA 811

Query: 899 ESEIVD 904
                +
Sbjct: 812 RETNEE 817


>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 813

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 554/896 (61%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A ++NP+I +  L +II+GPDFPTGA ILG+ GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A+A+++LN LY+ T L++ F +  +AL    P+   L  ++K +V  +++VV
Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   ++         
Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +L+ +I++E+L +K++    RRT+IV    + + E+ I +ED++++++H GY+K
Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY  K + +P  
Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG+A+IN++SL+  E+IT IM             +VF T++G +++     F  I 
Sbjct: 577 SRQSRGQAIINLISLSSDEKITDIMELSNLNEKSQ---LVFQTENGKIKKTDAELFTNIQ 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L++ D ++S+    +  DI++TTK G  ++F  S IR    RN+ GVR I L
Sbjct: 634 RNGIIAISLENGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSMG-RNARGVRAIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+SM IV                                                
Sbjct: 693 GEDDKVVSMNIVED---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E +++ V+  GFGK+TS  +F   NR GKG+R   +++  +   +VA  P N 
Sbjct: 707 -------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTKDVVATLPANL 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +D I++VS KG +IR+   +I    R T GV + +    ++ +VSV +  E    +
Sbjct: 758 DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDFIVSVTKYYEETSEE 813


>gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
 gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
          Length = 824

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/907 (38%), Positives = 518/907 (57%), Gaps = 83/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+       ++    + +V + +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSSESPDVPDDVADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + GV     + K + I G+ MG YHPHG++ IYDAL RMAQD+S+R  L++GQGNFGSV
Sbjct: 61  HESGVTSGSGHRKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+   A  LL D+ KDTV F+ NYD    EP VL + +PN+LVNG  
Sbjct: 121 DGDPAAAMRYTEARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TN+P HNLGEV+D  + +ID PD  +  LME ++GPDFPT A I+GR  +K A
Sbjct: 181 GIAVGMSTNVPPHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIVGRADVKQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+E ++G R+ IV+TE+PYQ NK+ ++E+IA+ VR+ ++  I DLR
Sbjct: 241 YQTGRGRVRMRAEYHVE-SNGRRDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VI+LK+ A+ DV+ N+L   + L+  FSV  +AL   +P+  TL  +L  
Sbjct: 300 DESDRNGVRIVIDLKQKANTDVVENRLLE-SHLEKTFSVINLALVDGEPKVLTLKELLAE 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V+ R+EVV RR+++ L +A DRAH+L G   A+ N DEVV +I+ + + + A+  L   
Sbjct: 359 YVSHRKEVVRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKETL--- 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q   I+ ++L  LT +   DI +E   +
Sbjct: 416 -----------------------KSAFDFSQDQADHIVRMQLGSLTSMEAADIESEYEDV 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+   +IL S   LL +IK EL  +K +    RRT  +E    + DED I  ED VV
Sbjct: 453 TARIERLEEILGSEQELLDVIKDELREIKTQYADERRTSFIEDTGTVADEDLIPEEDTVV 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S   Y+KRVP   + AQ RGGKG  G  ++D D V+ +F  STH  +L F+  G VY+
Sbjct: 513 VLSEGDYIKRVPAETFDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYR 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  ARG + +NIL L+ GE I+ ++   + +   ++ Y+  AT++G V+R 
Sbjct: 573 LKVYQVPEMSRTARGTSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRT 632

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            + +F  I  +G IA+ L+  D +  VE     +D++L ++ G  +RF    +R    RN
Sbjct: 633 SVGEFGNILSTGIIAIDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAMG-RN 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L   D++  +A V   D                                   
Sbjct: 692 ARGVRGMDLDAADRIAGVAAVESED----------------------------------- 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +LTV+E G+GKRT   ++R  +R+GKG+        N  G 
Sbjct: 717 ----------------DRSLLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRN--GD 758

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V+V  V D+D ++++S  G +I++PV+EI    R TKGV I +    + V  V  +R +
Sbjct: 759 VVSVDAVGDDDSLVVMSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGVS-VRAA 817

Query: 901 EIVDEAE 907
           +  D  E
Sbjct: 818 DQADGEE 824


>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
 gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
          Length = 838

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/899 (39%), Positives = 529/899 (58%), Gaps = 93/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +    +   M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+  ++ Y
Sbjct: 2   DEYNLIDQDVEHIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA   G V+G+YHPHG+A++YDAL R+AQ +SLR  L++G GNFGSVDGDPPAA RYT
Sbjct: 62  RKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF+PNYD   QEPVVL +R+PN+L NG  GIAVGMATNIP
Sbjct: 122 EARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G   V+ NPD  LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I++R
Sbjct: 182 PHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKIILR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R  I+VTEIPY VNKA ++E IA LV++KRI  I DLRDE+ R G R+V
Sbjct: 242 SKTSIEEIK-GRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMRIV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+A V+LN+L+  T LQ    V ++AL    P+  TL  IL+ ++ F+ +V+ R
Sbjct: 301 IELKKDANAQVVLNKLFTLTQLQDSVGVILLALVKGVPKVLTLKQILQEYIDFQVDVIRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++R H+L GL IA+ N+DEV+ I++ S N    ++ LM R           
Sbjct: 361 RTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTR----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q   I ++ L RLTG+ R  I +EL  +  ++ +  DIL
Sbjct: 410 ---------------FGLSDIQAEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R+L II +E+ +++++    RRT+I     +++ ED I  E+ VVT +++GY+KR+
Sbjct: 455 ANHQRVLDIIIEEVEAIQEKYGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRM 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+SVY+AQ RGGKG +G+  R++D VT++ + S+H ++LF ++ G  YK K + LP GS 
Sbjct: 515 PISVYKAQNRGGKGVTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSK 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG  + N+L L+    I  ++     E   ++ Y+V  TK G ++R  LS +  + + 
Sbjct: 575 ASRGVNIKNLLELSDDNLIAAMIKV---EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKR 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ LD  DEI  V      N++L+ T  G  +R   + +RV + R + GVR I L  
Sbjct: 632 GLIAIGLDDGDEIAGVRLTEGNNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLRG 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SMA +    +                                             
Sbjct: 691 DDYVVSMARIREGAS--------------------------------------------- 705

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +LTVSE G G+R     + + +R G G+         + G +  +  V+++D
Sbjct: 706 --------VLTVSETGLGRRVELESYPVRHRGGSGVLNY------KNGDVCGIKVVDEDD 751

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            II++S  G +IR+   +I +  R ++GV +     D +VV+  R   +E  D AE  E
Sbjct: 752 DIIMISSDGIVIRLRACDISMMGRYSRGVRLMKVTGDNKVVTFTR---TEHDDNAEIAE 807



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 100/259 (38%), Gaps = 13/259 (5%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +  M   +    +  +V V+  G +KR PLS Y+  R+  +G   + + D D +  + + 
Sbjct: 593 IAAMIKVEDFDDDKYIVMVTKRGKIKRTPLSAYKNVRK--RGLIAIGLDDGDEIAGVRLT 650

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
             +  +L  +  G   +     + + S  A G   +  + L   + + ++    E  S  
Sbjct: 651 EGNNELLIATHNGMAIRISENDVRVMSRTAHG---VRAIKLRGDDYVVSMARIREGAS-- 705

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               V+  ++ G  RR +L  +   +R G   +   + D +  ++   +++DI++ +  G
Sbjct: 706 ----VLTVSETGLGRRVELESYPVRHRGGSGVLNYKNGD-VCGIKVVDEDDDIIMISSDG 760

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R     I    GR S GVR + +   ++V++     H D      +        ++ 
Sbjct: 761 IVIRLRACDI-SMMGRYSRGVRLMKVTGDNKVVTFTRTEHDDNAEIAEVEKASEEDIRKA 819

Query: 764 LISGDTEEITSLKNDSSVE 782
                 E +         E
Sbjct: 820 QEEEKAEVLEDDAEPDDQE 838


>gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A)
           (DNA topoisomerase II) [Deinococcus deserti VCD115]
          Length = 811

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/892 (39%), Positives = 525/892 (58%), Gaps = 88/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+  G+  N+K+ K 
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+++IYDA+ R+AQ W++R  ++  QGNFGS+DGDPPAA RYTE R
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  L+ DL K+TVD +PNYD + +EP VL A  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID+P++ LD LME + GPDFPTG  I  +TGI+ AYATG   + +RG +
Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRIT-KTGIREAYATGHSGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE     R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR    R+V+E
Sbjct: 242 RIE-EKNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQ+ ++V  +++ G +P    L+  ++ F+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQTTYTVINLSIVGGEPRVLPLLNTMQYFLDHRADVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAHVL GL  A+ ++DEV+ +IR S     AR  LM R             
Sbjct: 361 RYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q++AIL++RL RL GL R+ ++ E + L   I+    IL  
Sbjct: 408 -------------FGLTEIQSQAILDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+ +++D     RR+ I E   D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 EKLLWREIKKEIRAIRDNYGDERRSTITELEEDIGKEDLIAVEDMVITMTKAGYLKRTKL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP     A
Sbjct: 515 DAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N+L  L + E I +++     +        +FAT+ G V++  ++++  I  +G
Sbjct: 575 KGTHIRNLLPSLREDENIASVLSVGGFDE---PGCFIFATRKGVVKKTLITEYGNITSAG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V      + ++L T+ G+ +RF    +R   GR + GV GI L +G
Sbjct: 632 LIAINLQPGDELIGVGIVNDIDHVVLATRNGKAMRFESDEVRA-TGRATQGVIGIRLREG 690

Query: 733 --DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+SMA+V   D   +                                         
Sbjct: 691 EDDAVVSMALVPGGDEASE----------------------------------------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSE G GKRT   D+    R G G+   DV++  + G LV +  V  N
Sbjct: 710 ---------LLAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTE--KTGKLVTLARVAGN 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++++++++KGT+IR  V E+R+  R  +GV + + A+ + V+S   IR  + 
Sbjct: 759 EELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIAERDSVISAFPIRREDE 810



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 109/307 (35%), Gaps = 68/307 (22%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYVVFATKHGNVRRNKLSDF- 665
            +   K +  I      ER +TI    ED    +       V+  TK G ++R KL  + 
Sbjct: 459 WREIKKEIRAIRDNYGDERRSTITELEEDIGKEDLIAVEDMVITMTKAGYLKRTKLDAYR 518

Query: 666 -IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG- 723
                  G    KL   D    V   +  + +L  T  G+     I  +   AGR++ G 
Sbjct: 519 AQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDL-PEAGRDAKGT 577

Query: 724 -VRGI--SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            +R +  SL + + + S+  V   D                                   
Sbjct: 578 HIRNLLPSLREDENIASVLSVGGFD----------------------------------- 602

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +    +  + KG  K+T   ++   N +  G+ A ++   +E   
Sbjct: 603 ---------------EPGCFIFATRKGVVKKTLITEY--GNITSAGLIAINLQPGDE--- 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIR 898
           L+ V  VND D ++L +  G  +R   +E+R   RAT+GV+       +D+ VVS+  + 
Sbjct: 643 LIGVGIVNDIDHVVLATRNGKAMRFESDEVRATGRATQGVIGIRLREGEDDAVVSMALVP 702

Query: 899 ESEIVDE 905
             +   E
Sbjct: 703 GGDEASE 709


>gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12]
          Length = 810

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/892 (40%), Positives = 539/892 (60%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG + +IDNPDI    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG 
Sbjct: 182 NLGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NKA ++E+IA LV+EK+I  I DLRDES+R+G RVVIE
Sbjct: 242 VKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  ++  R +V+ RRT
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKILTLKQMLSEYIGHRFQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++             
Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS 
Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILELQDILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL VK+     RRT I E  +++  ED I  E+M++T ++ GY+KR+  
Sbjct: 456 DSKIYDIMKKELLEVKEVYGDNRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q RGGKG SG+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+
Sbjct: 516 NKYKSQNRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + NIL + + E+I  I+     +       ++F TK G V++  L +F  IN  G 
Sbjct: 576 RGRLISNILRIGEEEKIRAIIKTRIFDKEKE---LIFVTKQGIVKKTSLEEFKNINTGGL 632

Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K    D+++ V      +N++ + T+ G  VRFP   +R   GRN++GV+GI L + 
Sbjct: 633 IAIKFKEEDDLIYVGLVEASDNEVFIATRRGFAVRFPNDNVRP-TGRNTMGVKGIELREK 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  ++   + D                                             
Sbjct: 692 DEVVSALLIKEKEMD--------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILT++E G+GKRT   ++   NR GKG+     ++  + G +V+V    D ++
Sbjct: 707 -------ILTITENGYGKRTRLDEYPSHNRGGKGVINLRCNE--KTGNIVSVLSAFDEEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G +IR P++ I   SRA +GV+I   A DE+V S+ RI+  E  +
Sbjct: 758 LVCITSNGVIIRTPMHSISRFSRAAQGVIIMKVASDEKVASITRIKAEEKEE 809


>gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 858

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/907 (38%), Positives = 503/907 (55%), Gaps = 96/907 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M   G   +K + KC
Sbjct: 16  KIDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYAMFDGGYRPDKAFSKC 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG++HPHG++AIYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE +
Sbjct: 76  ARVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTETK 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+ NYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 136 MAPLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGSVGIAVGMATNIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G +  + +P+   + L+E     I+GPDFPTGA ILG  GI++ Y TGRGSI I
Sbjct: 196 LREVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQILGVKGIQDTYRTGRGSITI 255

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  IE+    R  +VVTE+PYQVN   +  KIAELV++ R+  IAD+RDE+  R G R
Sbjct: 256 RAVVSIEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGRVGGIADIRDETSGRTGQR 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + EV+
Sbjct: 315 LVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDNVPRTLALDGFITAWVDHQIEVI 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L G   A+  LDEV+ +IR S   + AR  L            
Sbjct: 375 VRRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDEAREGLKS---------- 424

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + ++Q  AIL ++L RL  L R  I +E + +  +I E   
Sbjct: 425 ----------------LLEVDDIQADAILAMQLRRLAALERQKIIDEHDEIERQITEFKA 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+  +R   I+ +EL  + D     RRT I+ G   DM  ED I  E+MV+TV+  GY+
Sbjct: 469 ILADSARQRSIVSEELTEIVDRFGDDRRTEIMLGFDGDMSLEDLIPEEEMVITVTRGGYI 528

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YR+Q RGGKG  G  +R ED V   F+ +TH  +LFF+  G VY+ K + +  
Sbjct: 529 KRTRSDNYRSQHRGGKGVKGAQLRGEDVVDHFFVTTTHHWLLFFTKKGRVYRAKAYEVQE 588

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G+ + N+L+L   E I  I+   + E +    Y+V AT+ G +++  L ++   
Sbjct: 589 AGRDAKGQHVANLLALQPDEEIAEILDIRDYEVAQ---YLVLATRDGLIKKTALREYDTN 645

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
              G IA+KL   DE++S     +++D+LL ++ G  +RF  +   +   GR++ GV G+
Sbjct: 646 RSGGIIAIKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPMGRSTSGVIGM 705

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D ++  ++V                                              
Sbjct: 706 HFRGDDSLLDASVVSD-------------------------------------------- 721

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E ++  V+E G+ KRT++  +R+ NR G GI+   +S  ++ G LV    V
Sbjct: 722 ---------EGYVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLS--DDRGDLVGALIV 770

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIV 903
            ++D++++V   G ++R  V E+    R T GVV    A+ ++++++ +  E    S+  
Sbjct: 771 EEDDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARFAETDKIIALAKNTERNLDSQET 830

Query: 904 DEAESTE 910
           D   S E
Sbjct: 831 DADSSAE 837



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 95/260 (36%), Gaps = 13/260 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E + ++ D         +V  +  G +K+  L  Y   R G  G   + +RDED +    
Sbjct: 608 EEIAEILDIRDYEVAQYLVLATRDGLIKKTALREYDTNRSG--GIIAIKLRDEDELVSAL 665

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V   + +L  S  G   +          P  R  + +  +     + +       ++  
Sbjct: 666 LVEEDSDLLLVSRKGMSIRFTATD-EAMRPMGRSTSGVIGMHFRGDDSLLDASVVSDE-- 722

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                YV   T+ G  +R     +   NR G   K+A   D R +++      +++++L+
Sbjct: 723 ----GYVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLSDDRGDLVGALIVEEDDEVLV 778

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++ +     R+++GV     A+ D++I++A     + D  E        
Sbjct: 779 VLASGKVVRSAVAEVPAKG-RDTMGVVFARFAETDKIIALAKNTERNLDSQETDADSSAE 837

Query: 759 SAQRRLISGDTEEITSLKND 778
           +                 ++
Sbjct: 838 TETVTGEDAGDGGKEETVDE 857


>gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402]
          Length = 815

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/895 (37%), Positives = 519/895 (57%), Gaps = 87/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  + 
Sbjct: 6   TKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA R
Sbjct: 66  PTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I+
Sbjct: 186 MPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G 
Sbjct: 246 VRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGL 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +V
Sbjct: 306 RVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S + +TA+  LM+R        
Sbjct: 366 VTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMER-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 +VQ +AI++++L RLT L  +D+R EL  L + I    
Sbjct: 418 ------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLK 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY
Sbjct: 460 DLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGY 519

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  + 
Sbjct: 520 IKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQ 579

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG  + ++LS++  E IT ++   E +   +  Y++ AT  G V++    +F  
Sbjct: 580 EASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFAN 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G IA+KLD  D+++S      +++I+L T+ GQ +R     IR   GR+S GV GI
Sbjct: 637 AKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTGI 695

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+  D++     V                                              
Sbjct: 696 KLSSEDELTGALRVTE-------------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     Q +L ++E G+GKR    +F    R   G R   +S+  + G +V +  V
Sbjct: 712 ---------NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSE--KTGEVVGLLTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            D+D+++ ++ +G  IR+ V+ +    R+ +GV I      + ++ ++ +   E 
Sbjct: 761 FDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDEE 815


>gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
 gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
          Length = 838

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 521/898 (58%), Gaps = 92/898 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I DEM++SY+ YA++VI+GRAIPD+RDGLKPVHRR L+ M + G   +K Y K 
Sbjct: 13  KVIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKS 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR     MGKYHPHG+A+IYD L +MAQ +S R+ L++GQGNFGS+DGD  AA RYTE R
Sbjct: 73  ARAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEAR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL DL K TVDF PN+D S +EP VL ++ PN+LVNG  GIAVGMATN+P HN
Sbjct: 133 LTRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV       I NPD  ++ LM+++ GPDFPTG +I G  GI +AY TG G + +RGV+
Sbjct: 193 LREVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGTEGIVSAYHTGYGKLTVRGVA 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE       +I+++EIPYQVNKA M+E IA LV+EK+I  I+DLRDESDR G RVV++L
Sbjct: 253 EIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVDL 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G    V+LNQLY++T L+S F +  +A++  +P+   L  I+  F+  R  VV RR +
Sbjct: 313 KKGVIPTVVLNQLYKHTPLESTFGIINLAISDNQPKVLGLKAIISEFLHHRATVVRRRCE 372

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+DR H+L+GL +A+  +DEV+  IR S + E A++ L+                
Sbjct: 373 FDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIA--------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T  L+E QT AIL+++L RL  L +  IR+E +SL   I E   ILS  
Sbjct: 418 -----------TFGLTEPQTVAILQMQLRRLAALEQAKIRDERDSLAHVIAELERILSCE 466

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +   I++E++ V +     RRT I      +E ED I  + ++++++   Y+KR+PL 
Sbjct: 467 ANIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKPVLISITTQNYIKRLPLE 526

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGG+G  G+  +DED V D+F+ S H  +L F++ G VY  KV+ +P  S  ++
Sbjct: 527 TYRMQRRGGRGVIGMATKDEDSVEDIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSK 586

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L L Q E IT ++P     +  ++ Y++F+T+ G V +     F +   +G  
Sbjct: 587 GKAIVNLLEL-QDELITAVIPIR---TFRHDRYLLFSTEQGQVVKVPQDQFSRPRSTGIN 642

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D ++ V+      +++L+T+ GQ +RF    +R    RN+ GVRGI L  G  
Sbjct: 643 AISLRENDSLVDVKLTDGTKELILSTRKGQSLRFHEQTVRTVG-RNASGVRGIKLKYG-D 700

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++  A V+                                                    
Sbjct: 701 LVQAATVV---------------------------------------------------- 708

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            ++  +LT++E G+GKRT   +FR   R   G+R    +  N    +VA   V+ +D+I+
Sbjct: 709 -EKDHLLTITELGYGKRTEFDEFRGHGRGTMGVRNILTAPQN---GVVATKAVSSDDEIV 764

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES----EIVDEAES 908
           ++S  G +IR+ V++I +  R+ +GV I    +D+RVV +  +++        DEAE 
Sbjct: 765 VMSALGNVIRMKVSDISVQKRSARGVRIIRLDEDDRVVGLAVLQQEILSASFDDEAEE 822


>gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli]
 gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli]
          Length = 859

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/852 (43%), Positives = 532/852 (62%), Gaps = 20/852 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             ITS+++  E++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK + K
Sbjct: 7   NEITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNKPHKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+AAIYD + RMAQ +S+R +LI+GQGNFGSVDGD  A+ RYTE 
Sbjct: 67  SARVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMRYTEI 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 127 RMSKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D CVA++++ ++ ++ LM  I+GPDFPT  +I G+ GI  AY TGRG + +R  
Sbjct: 187 NLAEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIYGKQGIIEAYHTGRGRLFVRAR 246

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             IE+    ++++I+VTE+PYQVNKA ++EKIAELV+EKRI  I  LRDESD+ G RVVI
Sbjct: 247 VQIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGMRVVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG + DV+LN L+  T LQ  F +NMVAL   +P    L  ++  F+A R EVV RR
Sbjct: 307 EVKRGENVDVLLNNLFSQTQLQVTFGINMVALVDGRPVLLNLKQLISEFLAHRREVVTRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GL IA+AN+D ++ +I+ + +P  A+ +L+ + W+   + +++ 
Sbjct: 367 TIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVAEMLT 426

Query: 433 LIDDSSY----TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             DD +           T  LS  Q +AIL+LRL RLTGL ++ I  E       I + L
Sbjct: 427 KTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLL 486

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   RL  +I++EL+++K+E   PRRT I+    ++ +ED I  ED+VVT+SH GYV
Sbjct: 487 DILNQPERLCRVIQEELIAIKEEFLDPRRTEIITVDAEINEEDLIPAEDVVVTLSHEGYV 546

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L VY AQRRGG+G+S   +++EDF+  L I +TH ++L FSS+G VY  KV++LP 
Sbjct: 547 KRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGKVYWLKVYKLPE 606

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  A+G+ +IN+L+L + ERIT ++P     +     ++  AT  G  ++  L DF + 
Sbjct: 607 GSRIAKGRPIINLLALGENERITAVLPIQNYSAE---HFIFMATMKGTTKKTSLIDFSRP 663

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+ L   D ++ V     + D+LL T  G+ +RF  S +R    R + GVRGI 
Sbjct: 664 RHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCMG-RTACGVRGIK 722

Query: 729 LAKGDQVISMAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L +G +VIS+ I           R  Y K        ++            ++  G +  
Sbjct: 723 LQEGQRVISLIIAKPYGLILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARNGQV-- 780

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  L    ++ ++ K    RT   + R+++R  +G+R   +++      LV +  +
Sbjct: 781 -VAAVQVLPSDEVMLITNKATLVRTRVAEIRVASRHSQGVRLIRLNEGE---TLVGLERI 836

Query: 848 NDNDQIILVSDK 859
            ++    L+++ 
Sbjct: 837 EED----LITEN 844



 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 150/438 (34%), Gaps = 38/438 (8%)

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
                 R +              +     + +L + R++  +++ L   +   + + R+I
Sbjct: 440 KDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLLDILNQPERLCRVI 499

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLID--DSSYTIGSDGTMYLSEVQTRAILELRL 462
           +           L  R      +   I+  D   +   + +       + Q+  +   + 
Sbjct: 500 Q-EELIAIKEEFLDPRRTEIITVDAEINEEDLIPAEDVVVTLSHEGYVKRQSLDVYHAQR 558

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV- 521
               G    D++ E       I+  L I ++ + LL       +        P  +RI  
Sbjct: 559 RGGRGKSSGDVKEE-----DFIEHLL-IANTHATLLCFSSIGKVYWLKVYKLPEGSRIAK 612

Query: 522 -------------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
                        E +  +        E  +   +  G  K+  L  +   R    G   
Sbjct: 613 GRPIINLLALGENERITAVLPIQNYSAEHFIFMATMKGTTKKTSLIDFSRPRH--DGIIA 670

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           + +RD D +  + +      VL F+  G V +     +      A G   +  + L +G+
Sbjct: 671 IDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCMGRTACG---VRGIKLQEGQ 727

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EIL 685
           R+ +++             ++ AT+HG  +   + D    +R G   + + +     +++
Sbjct: 728 RVISLIIAKPY------GLILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARNGQVV 781

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +       ++++L T     VR  ++ IRV A R+S GVR I L +G+ ++ +  +    
Sbjct: 782 AAVQVLPSDEVMLITNKATLVRTRVAEIRV-ASRHSQGVRLIRLNEGETLVGLERIEEDL 840

Query: 746 ADYDERICYMKHMSAQRR 763
              +       H+  ++ 
Sbjct: 841 ITENPDSVDALHLDHEKN 858



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +E   ++L   E  ++T+S +G+ KR S   +    R G+G  + DV + + I  L    
Sbjct: 523 AEINEEDLIPAEDVVVTLSHEGYVKRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHL---L 579

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIR 898
             N +  ++  S  G +  + V ++   SR  KG  I +     ++ER+ +V  I+
Sbjct: 580 IANTHATLLCFSSIGKVYWLKVYKLPEGSRIAKGRPIINLLALGENERITAVLPIQ 635


>gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
          Length = 885

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 528/896 (58%), Gaps = 56/896 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I D M  +YL Y+++V +GRAIPD+RDGLKPV+RRIL+ M Q+G+  +   VKCAR+
Sbjct: 10  QVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMGKYHPHG+AAIYDAL R+AQD+S+R  LIEGQGNFG++DGDP AA RYTECR+++
Sbjct: 70  VGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMER 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTV+  PN+D S  EP VL ARYP +LVNG  GI VGMAT+IP HNLGE
Sbjct: 130 LAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  + ++DNP   +D LME + GPDFPTGA+I GR  ++  Y TG GSI IR  + I 
Sbjct: 190 VIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSIKIRAKADI- 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316
                REQI+V+EIPY + K  +++KIAELV +KRI  I+ LRDES  R G R+VIE+KR
Sbjct: 249 IEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIKR 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           GA   V+LNQL+ +T L++     M+ ++  +P    L+ +L+A++  R EV+VRRT + 
Sbjct: 309 GAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRLEVIVRRTLFE 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA+ RAH+L GL  A+AN+++VV+IIR S + + A   L+ R                
Sbjct: 369 LKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        +++Q  AIL++RL +LTGL  + +  E   L   I+    + +SR  
Sbjct: 413 ----------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREM 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            LG+IK EL  ++++   PRRT I     D+   D I R   V+TVS+ GY+KRVP   Y
Sbjct: 463 QLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R Q RGGKG  G+  ++ED V  LF   +H  + FF+  GF+Y   V+ +P GS   +G+
Sbjct: 523 RTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGR 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A+ N++ +  GE+I  ++   ++E    N Y+V A++ G +++++L+ F  + R G  A+
Sbjct: 583 AITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRAL 642

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLA-KGDQ 734
            ++  D+++        N+ILL+TK G    F     ++   GR + GV G+    +GD 
Sbjct: 643 VIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDS 702

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ I+                            EE    +    VE  +  +    + 
Sbjct: 703 VVSLEIIRE-----------------------HLYEEPAEDEEGEEVEVEVDVDEEMPVV 739

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V++ G GKR+    +R + R  KG+    + +      +++V  + + D+I+
Sbjct: 740 GSGPEVLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGE---TVLSVVQITEEDEIL 796

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           L +++G L+R+P +EIR   RA+ GV I +    +R+  V ++ E ++     + E
Sbjct: 797 LTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEE 852


>gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 833

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/906 (41%), Positives = 533/906 (58%), Gaps = 87/906 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            I+  ++   + +   ++   M++S+  Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q 
Sbjct: 12  EILQPEQTHSRLLEHRTVERVMEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQN 71

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   N K+VK ARI G+VMGKYHPHG++AIYD++ R+AQDW++R  L++GQGNFGS+ GD
Sbjct: 72  GNRSNAKFVKSARIIGDVMGKYHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGD 131

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL K A  LL D+ K+TVDFR N+DGS QEP+VL A+ PN+L+NG  GIA
Sbjct: 132 PPAAHRYTEARLDKPAEELLADIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIA 191

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMAT+IPTHNLGE+VD  V +IDNP+  +D L++ ++GPDFPTGA++ G   +  AY T
Sbjct: 192 VGMATSIPTHNLGELVDATVELIDNPEATVDDLLKHVKGPDFPTGAIVYGGAPMWQAYQT 251

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ IR V++IE+T   R +IVVTE+PY VNKA ++EKIAELV+EK+I  I+DLRDES
Sbjct: 252 GRGSVTIRAVANIEETKRGRHRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDES 311

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFV 362
            R   RVVIELK+ A    +LNQLY+ T+LQ+ F  NM+AL    +P    L  IL  F+
Sbjct: 312 ARGNVRVVIELKKDAYPKKVLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFI 371

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R  VV RRT++ L KA  RAH+L G  IA+ ++DEV++ IR S   E A + L+ R  
Sbjct: 372 KHRRSVVRRRTEFELKKAEARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIAR-- 429

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q +AIL ++L RLTGL R+ I NEL  L  
Sbjct: 430 ------------------------FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLA 465

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVT 541
            I++   IL+    +L IIK EL+ +K++    RR++ I   L    DE+ I  ED VV 
Sbjct: 466 LIEKLKGILADEQEILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVL 525

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++   Y+KR   S YR Q RGGKG+ G+  ++ D +  +    TH  +LFF++ G V++ 
Sbjct: 526 LTSENYIKRTLASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRL 585

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S QA+G A +N+L L   E+IT I+ F +D  + ++ Y+  AT  G +++  
Sbjct: 586 KAYEVPAASLQAKGVAAVNLLQLQPEEKITAIIKFEKD--AKDDGYLFMATVKGTIKKTP 643

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + D+  I  +G IA+KLD  DE+  ++  +  +DIL++T  GQ +RF     R    R +
Sbjct: 644 VKDYANIRTNGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMG-RAA 702

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   D V+ M I                                    ND   
Sbjct: 703 RGVRGVRLRPNDSVVGMDIA-----------------------------------NDDRT 727

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              ISE                     GK T   +F    R G GI+A  V+   + G +
Sbjct: 728 LLVISENGY------------------GKATKISNFPSHKRGGVGIKAAVVTA--KTGPI 767

Query: 842 VAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++V  +  +D + +LVS +G  IRV + +I +  R T+GV I  T+ D+ V SV  + E 
Sbjct: 768 ISVKTIQQDDIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSER 827

Query: 901 EIVDEA 906
              +E+
Sbjct: 828 SSNEES 833


>gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
 gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
          Length = 908

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 539/889 (60%), Gaps = 45/889 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A+IDN ++  + ++E I GPDFPT  +I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I+   +  +E I+V E+PYQVNKA ++EK+AELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 ASIDVHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +V+LN LY+ T +Q  F +NMVAL   +P+ F +  +L+AFV  R EVV RR
Sbjct: 306 EIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GL+IA+AN+D ++ +I+ S N + +  +L+ + W   ++ +++ 
Sbjct: 366 TIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLS 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              + +             DG  YL+  Q +AI++L+L +L+G+  D I +E  +L   I
Sbjct: 426 EAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL++ +RL+ +I +EL++++DE    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 AELMHILATPARLMEVICEELVAIRDEFGDERRTEITNASHDLSLEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FS  G +Y  KV+
Sbjct: 546 EGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLYWLKVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARG+ ++NIL L   ERIT I+P  +     ++ Y+V AT  G V++ +L  
Sbjct: 606 QLPLASRTARGRPIVNILPLESDERITAILPVRDYA---DDKYIVMATASGTVKKTRLDA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------AIRVFA 717
           +     +G IA+ L   D ++ V+     ND++L +  G+ VRF           I++  
Sbjct: 663 YSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSETGEIKLDP 722

Query: 718 G------------RNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYMKHMS 759
                        R   GVRGI L    +V+S+ I      +L    +   +   +    
Sbjct: 723 ETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLIIPKNDGPILTITENGFGKRTDLAEYP 782

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           A+ R   G      S +N   V     E+  +        I+ +++ G   RT   +  +
Sbjct: 783 AKSRATKGVVSIKVSERNGKVVGAVQVEDLDE--------IMLITDSGTLVRTRVNEVSV 834

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
             R+ +G+R    +    + AL  +  + +  ++  V++   +I   V 
Sbjct: 835 IGRNTQGVRLIRTADDEHVVALQRIDEIEEPAELEEVAEGDEVIETSVE 883


>gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
 gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
          Length = 874

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/883 (40%), Positives = 535/883 (60%), Gaps = 49/883 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E++++ +    + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENLLNQN----QDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+
Sbjct: 57  NNLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+      +L D+ KDTVDF PNYD    EP VL +R PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E++DG + V++N +  L+ +ME I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIE    +++ IVV E+PYQ NKA ++E+IAELV+EK+I  I+++R
Sbjct: 237 YRTGRGRVKLRAKTHIE-KKPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK 
Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  +AR  L+ +
Sbjct: 356 FLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q  AIL++RL++LTGL R+ +  EL  L
Sbjct: 416 --------------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK ELL +K++   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 MAEIARLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  +   S +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFAQSKS---LAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPI---SAIRVF 716
            LS+F  I   G  A+ LD  DE+++       E  I L  +LG             ++ 
Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEGEEEPINLIGELGVETEINEIEAIEAQID 686

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
              ++ G +     + D    M  ++       +    +  +    R   G T       
Sbjct: 687 EENSNDGDKNGERTESDDSEKMLFIVTKKGMCLKFK--LSKVRQMGRTARGVTGIKFKEA 744

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D  V   + E   QE       +L+VS+KG GKRT++ ++R++NR GKG+    ++  N
Sbjct: 745 GDEVVGAAVIENNAQE-------VLSVSQKGIGKRTTADEYRLTNRGGKGVICMKLT--N 795

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             G L+ V  V++   ++ ++  G +IRV +  IR A R T G
Sbjct: 796 RTGDLIGVVMVDEEQDLMALTSSGKMIRVDMQSIRKAGRNTSG 838


>gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
 gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
          Length = 811

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/894 (40%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V      N   IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDTVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+    VS+  + G +V+V  V++++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551]
 gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551]
          Length = 861

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 521/898 (58%), Gaps = 75/898 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  I  EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV     + K 
Sbjct: 18  EVQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMNEAGVSARSSHRKS 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + I GE MG YHPHG++AIYDALARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 78  SSIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 137

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL+D+ KDTVDF+ NYD   QEPVVL + +PN+LVNG  GIAVGM+TNIP HN
Sbjct: 138 MAPIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVNGSSGIAVGMSTNIPPHN 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D    +I+NPD  ++ LME ++GPDFPTGA I+G+  +  AY TGRG I +R   
Sbjct: 198 LGEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIVGKNAVHKAYKTGRGRIRVRAEF 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +     D + IV+TE+PYQ NKA ++E+IA+ V + +I  I DLRDESDR G RVV+EL
Sbjct: 258 EV---DEDGDNIVITELPYQENKARLIERIADDVNDGKIEGIRDLRDESDRDGIRVVVEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+ DV+ NQL  +  L+S F V  +AL   +P   TL   LK ++  R EVV RR++
Sbjct: 315 KRGANPDVVKNQLLEH-HLESTFGVINLALVDGQPRVLTLKETLKEYLDHRREVVRRRSE 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L        D + L    
Sbjct: 374 YELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAALRGEMTVEVDGEPL---- 429

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   SE Q   I+ ++L  LT +   +I++E   +   I    +IL++ 
Sbjct: 430 ----------PTFDFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNEILNNP 479

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L  +IK EL ++KDE D  RRT  +E    +  ED I  ED+VV V+   Y+KR+PL 
Sbjct: 480 DELDAVIKSELTAIKDEYDDERRTSFIEDTGTVTHEDLIAEEDVVVVVTEDDYIKRMPLD 539

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGGKG  G  +++ D V+ +F+ STH  +L+F++ G VYK K +++P  S  AR
Sbjct: 540 TFRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEMSRTAR 599

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK+ +N+L L+ GE IT ++   + E   +  Y+  AT++G V+R  +  F  I  +G I
Sbjct: 600 GKSAVNLLELDDGEEITAVVNTADIEDETD-KYLTMATQNGYVKRTSVEKFQNILTTGII 658

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KLD  DE+  VE     +D++L ++ G  +RF  S +R    R++ GVRG+ L   D+
Sbjct: 659 ATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAMG-RSARGVRGMKLEGDDE 717

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ +A V                                                     
Sbjct: 718 LVGVAAVDED-------------------------------------------------- 727

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +  ++LTV++ G+GKR+    +R  +R+GKG+     +  N  G + A+  V   D + 
Sbjct: 728 -RHNWVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRN--GPVCAMETVGYGDHLF 784

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER--IRESEIVDEAESTE 910
           ++S+ G ++R PV +I    R T GV +    + + V SV+   +   E+ +EA   E
Sbjct: 785 VMSESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVYNVGSDEVDEEASDEE 842



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 99/236 (41%), Gaps = 13/236 (5%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR  +  +  Q     G     + ++D + D+ +      ++  S  G   +  
Sbjct: 636 TQNGYVKRTSVEKF--QNILTTGIIATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFD 693

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      ARG   +  + L   + +  +    ED  +W    V+  T++G  +R+ +
Sbjct: 694 ESDVRAMGRSARG---VRGMKLEGDDELVGVAAVDEDRHNW----VLTVTQNGYGKRSDI 746

Query: 663 SDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + + +R+GK  + + + D    + ++ET    + + + ++ GQ +R P+  I     R
Sbjct: 747 ERYRRQSRNGKGLIDIKTNDRNGPVCAMETVGYGDHLFVMSESGQILRTPVEDISTVG-R 805

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           N++GV  + + +GD V S+ +      + DE     +    +        E+ ++ 
Sbjct: 806 NTMGVTVMDMDEGDHVASVDVYNVGSDEVDEEASDEEAPDDETSDEDTSDEDTSTE 861


>gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
 gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
          Length = 875

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/868 (40%), Positives = 528/868 (60%), Gaps = 40/868 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV +N+
Sbjct: 3   ESSGENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++++Y+ + RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 63  AHKKSARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  LL DL KDTVDF+PN+D S  EP VL A++PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVVDG +A IDN +I +  LME ++ PDFPTG +I G  G+++A  TGRGSI+
Sbjct: 183 MAPHNLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIYGYNGVRSAMETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +  E +   REQI+VTEIPY +NKAAM+E+IA L+ +K++  I+D+RDESDR+G R
Sbjct: 243 MRSKAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V +LK+ A  +++LN L++YT LQ+ F VN VAL   +P    L  ++K +V  R  V+
Sbjct: 303 IVFDLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGRPVLLNLKDLIKHYVDHRIVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A  RAH+L GL IA+ NLD V+ +IR + +PETA+  LM++         
Sbjct: 363 TRRTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q RAIL++RL RLTGL R+ I  E   + I I +  D
Sbjct: 414 -----------------FELSEIQARAILDMRLQRLTGLEREKIVKEYEEIMILIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++  R   IIK EL  +K+     RRT+I     +  DED I  E+M++T+S  GY+K
Sbjct: 457 ILANEYRKYEIIKTELTDIKERYGDARRTQIEFSAEEFSDEDMIADEEMLITISKEGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS YR Q RGG G  GV  +D DF   LF  +    +L F+  G ++  KV+ +P G
Sbjct: 517 RTPLSEYRTQTRGGVGSRGVKTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+ + N++SL  G+ I +++      DE   NN Y++  T+ G +++  L  + +
Sbjct: 577 SKTSKGRPIQNLISLESGDSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSR 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ ++  D +L+V     +NDI++ +  G+ VRF    +R    R + GVRGI
Sbjct: 637 PRTNGIIAISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPMG-RTAAGVRGI 695

Query: 728 SLAK-GDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +L    ++VI M  +   DA         + K  +     ++    +  S  N +   G 
Sbjct: 696 NLNDPDNKVIGMVCISREDAQLLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNATDKVGK 755

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +   R      +E  ++ ++  G   R S  D R + R+ +G++   +S  +EI ++  +
Sbjct: 756 LVAIREV---TEEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSVTRI 812

Query: 845 FPVNDN--DQIILVSDKGTLIRVPVNEI 870
               D   +++    + G ++  PV ++
Sbjct: 813 LKDPDEKAEELD---EDGNVVAKPVAQV 837


>gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii]
          Length = 824

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 533/902 (59%), Gaps = 89/902 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+     ++    I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM
Sbjct: 1   MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSV
Sbjct: 57  HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A +DNPDI +  LM+ ++GPDFPTG  ILG TG++ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R    I   + +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLR
Sbjct: 237 YETGKGIIAVRAQHEI-VETKNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  
Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A + E++ RRT++ L KA  R H+L  L  A+ ++D V++II+ + +PE AR  L+  
Sbjct: 356 YIAHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIA- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    T   +E+Q R+I  ++L RLTGL  D I  E ++L
Sbjct: 415 -------------------------TYDFTEIQARSIFTMQLQRLTGLEIDKIHEEADNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
             +I E   IL      + IIK EL  +KD+ D PR + + +   LD+++ED I  ED V
Sbjct: 450 AHKITEYKQILGDEDLKIEIIKSELQDIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDTV 509

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV++  Y+KR+ L  Y+ Q RGG G SGV + D+DFV  + + STH   LFF++LG V+
Sbjct: 510 VTVTNNPYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVF 569

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + LP GS Q++G  ++N L+   GE++ +     + ++   + Y+ F TK G V+R
Sbjct: 570 KLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDA--EDHYLNFVTKRGIVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++++  I ++G IA+ L   DE+L  ++      ILL    G+ + F  + IR    R
Sbjct: 628 THINNYKNIRQNGIIAISLREDDELLLTKSTNGHKHILLGASNGKAIHFLETDIRQIG-R 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ +   ++++  A+V   + D                                
Sbjct: 687 TATGVRGMDIPDDEEIVGFAVVDGIEDD-------------------------------- 714

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               IL ++E  +GK TS  ++R+ N  GKG++  +V+  N  G
Sbjct: 715 --------------------ILVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKN--G 752

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V +++ II+VS +G  IR+P+++I    RAT+GV I +   D++V ++  +  
Sbjct: 753 KLKTLRKVTNDEDIIVVSHRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDH 812

Query: 900 SE 901
            +
Sbjct: 813 QD 814



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 15/228 (6%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             ++++ V     E+ ++  T      R  +   ++   R  VG+ G+ L   D V  +A
Sbjct: 498 DNEDLIPV-----EDTVVTVTNNPYIKRMNLDEYKL-QNRGGVGMSGVKLHDDDFVEHIA 551

Query: 740 IVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +    D         R+  +K  +            I +  N    E   S    ++   
Sbjct: 552 MTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDA 611

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           ++ ++  V+++G  KRT   +++   ++G  I A  + + +E   L+     N +  I+L
Sbjct: 612 EDHYLNFVTKRGIVKRTHINNYKNIRQNG--IIAISLREDDE---LLLTKSTNGHKHILL 666

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +  G  I     +IR   R   GV       DE +V    +   E  
Sbjct: 667 GASNGKAIHFLETDIRQIGRTATGVRGMDIPDDEEIVGFAVVDGIEDD 714


>gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 827

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/886 (40%), Positives = 543/886 (61%), Gaps = 71/886 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +  EWNK Y K
Sbjct: 6   KEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD++ RMAQ +SLR  LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH +L +L K+T+DF  NYDG+ + P +L  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A + NP I L  LM  I GPDFPT  +I G+ GIK AY TG+G I++R  
Sbjct: 186 NLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKIIVRSK 245

Query: 254 SHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +IE    ++++ +++ E+PYQVNK+ ++EKIA LV+EK+I  I ++RDESD+ G R+VI
Sbjct: 246 YNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ++K+   + +ILNQLY  TSLQ+ F +NMVAL+  KP+   L  ILK F+  R++++ R+
Sbjct: 306 DIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKIIKRK 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L K+  + H+L G AIA+ N++ ++ +I+ S N   A                 I+
Sbjct: 366 CLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIA-----------KKKLKKIN 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              +++ +  +    Y S  Q+ AIL ++L +LT L +  I  E N L  +  +   ILS
Sbjct: 415 WKKENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILS 474

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +++ L   I++EL  +K +    R+T+I+  + ++  ED IV+E +VVT+S+ GYVK  P
Sbjct: 475 NKNILEKKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQP 534

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S Y AQ+RGG+G+S    ++ED++T+L + ++H ++L FSS G +Y  KV++LP  S  
Sbjct: 535 ISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSRN 594

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGK ++N+L L   ERITTI+P  + +SS N   +  AT  G V++  L  F +   SG
Sbjct: 595 ARGKPIVNLLPLTSKERITTILPISKYKSSIN---IFMATALGFVKKTSLIQFKKPRNSG 651

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D+++ V   T  N+I + T  G+ V+F    IR    R + G+RG+ +   
Sbjct: 652 IIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMG-RTASGIRGMKITNN 710

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+++S+ +    D                                               
Sbjct: 711 DRLVSLLVPNKKDD---------------------------------------------- 724

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL V+  G+GKRT+   F I +R+ KG+ +  V++ N  G ++    V  NDQ
Sbjct: 725 -------ILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKN--GVVIGAIQVKQNDQ 775

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           I+++++ GTL+R  V+EI I  R T+GV++  T K E+VV ++++ 
Sbjct: 776 IMIITNAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLS 821



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           + ++  S    + +   +SE   +++ +KE  ++T+S  G+ K     D+    R G+G 
Sbjct: 489 EIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQPISDYNAQKRGGRGK 548

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
            A    + + I  L+     N +D I+  S +G L  + V ++   SR  +G   V +  
Sbjct: 549 SAAKTKEEDYITNLLVA---NSHDTILCFSSRGLLYWMKVYQLPETSRNARGKPIVNLLP 605

Query: 885 TAKDERVVSVERIRE 899
               ER+ ++  I +
Sbjct: 606 LTSKERITTILPISK 620



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 11/219 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +  G     PIS       R   G       + D + ++ +    D   
Sbjct: 514 MIVKETVVVTLSYSGYVKYQPISDYNA-QKRGGRGKSAAKTKEEDYITNLLVANSHDTIL 572

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                  + +MK         +   + I +L   +S E  I+             I   +
Sbjct: 573 CFSSRGLLYWMKVYQLPETSRNARGKPIVNLLPLTSKE-RITTILPISKYKSSINIFMAT 631

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             GF K+TS   F+   R+  GI A ++ K ++   L+ V     N+ I + + KG +++
Sbjct: 632 ALGFVKKTSLIQFK-KPRNS-GIIAINLRKNDK---LIGVSLTTGNNNICMFTSKGKVVQ 686

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                IR   R   G+       ++R+VS+    + + +
Sbjct: 687 FSEKTIRKMGRTASGIRGMKITNNDRLVSLLVPNKKDDI 725


>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 810

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 533/895 (59%), Gaps = 88/895 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +   E GI  V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRI++GM  +G+  +
Sbjct: 3   ENVNENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K A + GEVMGK+HPHG+++IYDA AR+AQD+++R  L++GQGNFG+VDGD PAA 
Sbjct: 63  KSYRKSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAP 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDTVDF PNYD    EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEMRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNLGE +   +  I+N DI+++ LM+ I+GPDFPTGA+ILG+ GI +AY TGRG I
Sbjct: 183 NMAPHNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIILGKQGIIDAYKTGRGKI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD-ESDRQG 307
            +R  + IE     R +IV+TEIPYQVNK  ++ KIA+LV+ K I  I+++RD  S + G
Sbjct: 243 QVRARAEIE-EHKGRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++ I+LKR A+ +V+LN LY+ T +Q  F +  + L   +P+   L  I+K +V  +  
Sbjct: 302 IKIDIDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNGEPKVLNLKEIIKYYVDHQRN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL IA+ N+D +++I+R S + + A+ +  +        
Sbjct: 362 VVRRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKE------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+++Q +AIL++R+ RLTGL R+ +  E   L   I + 
Sbjct: 415 -------------------FGLTDIQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL ++  L   I +EL  +K++    RRT +     D++ ED I  ED+V+T++  GY
Sbjct: 456 KSILENKKLLDNTIIEELEEIKEKYSDLRRTVLAPDEGDIDSEDLIEEEDVVITLTEFGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   Y+ QRRGG G S +  R+EDFV D++I STH ++LFF++ G VY  K + +P
Sbjct: 516 IKRMPEGTYKPQRRGGTGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S QA+G A+IN+L+L   E +T ++P    + + N   +V ATK+G +++   S+F +
Sbjct: 576 ESSRQAKGTAIINLLNLEGDEFVTAVIPVRNVDENAN---LVMATKNGLIKKTSYSEFEK 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I ++G IA+ L+  D ++ V   +  ++I++ TK G  +RF  S +R    R ++GV+ I
Sbjct: 633 IRKNGLIAITLNEGDNLIGVRLTSGRDEIMIVTKNGMAIRFSESDVRNMG-RTAMGVKSI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D+V+S  I                                               
Sbjct: 692 DLKNDDEVVSFEI----------------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++++L +SE GFGK T   ++R  NR+G G+     ++  + G LV+   +
Sbjct: 705 ------PQDDKYLLVISENGFGKMTKMTEYRKQNRAGVGLLTYKATE--KSGKLVSAKVI 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + +D+I++++  G +IR+    I +  R T GV + +  KD  VVSV +    EI
Sbjct: 757 DKSDEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNI-KDSEVVSVAKYIGEEI 810


>gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
 gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
          Length = 872

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/901 (40%), Positives = 538/901 (59%), Gaps = 41/901 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     
Sbjct: 6   ENNQDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLGVGSRSP 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  AA RY
Sbjct: 66  YMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDGAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+      +L D+ KDTVDF PNYD    EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + V++N +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKL 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IVV E+PYQ NKA ++E+IAELV+EK+I  I+++RDESD+ G RV
Sbjct: 246 RAKTHIE-KKPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDKDGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK F+  R+ V++
Sbjct: 305 VIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  +AR  L+ +          
Sbjct: 365 RRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL++RL++LTGL R+ +  EL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +IK ELL +K++   PR T IV+   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N++ L   E+I  I+P  +   S +   + F TK+G V+R  LS+F  I  
Sbjct: 579 RTAKGKAVVNLIQLQPDEKIKAIIPTTDFAESKS---LAFFTKNGIVKRTNLSEFKNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE+++       E  I L  +LG                          
Sbjct: 636 IGVRAINLDENDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSEENDEN 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A      S  ++             +  +    R   G T        D  V   + E  
Sbjct: 696 AAEGSDDSEKMLFIVTKKGMCLKFKLSKVRQMGRTARGVTGIKFKEAGDEVVGAAVIENN 755

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            QE       +L++S+KG GKRT++ ++R++NR GKG+    ++  N  G L+ V  V+D
Sbjct: 756 DQE-------VLSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDD 806

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++ ++  G +IRV +  IR A R T GV++ +   D+  VS+ +  +++  ++  S 
Sbjct: 807 EQDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDDV-VSIAKCPKADDGEDESSE 865

Query: 910 E 910
           E
Sbjct: 866 E 866


>gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 811

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL ++ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEKEKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V      N   IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDTVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+    VS+  + G +V+V  V++++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 811

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/894 (40%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 VFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTTIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E  S      VVF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSSEKE---VVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V      N   IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDAVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  VN+++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVNEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
          Length = 826

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/911 (39%), Positives = 552/911 (60%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDRLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     N   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSNERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R
Sbjct: 627 NLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMG-R 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV GI L + D V+   ++                                      
Sbjct: 686 NARGVIGIRLNENDFVVGAVVISD------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 710 ----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    
Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAEST 909
           + E  +  E++
Sbjct: 810 KEEEPENLENS 820


>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
 gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
          Length = 821

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/843 (42%), Positives = 527/843 (62%), Gaps = 47/843 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+
Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+L +KD     RRT I  G ++ +EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++++GE++T ++      S   + Y +F TK G  +R  +S F  I
Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVG---SFDEDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     +  I++ T+ G  VRF    IR    R + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSMG-RTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L  GD+V+ M IV          +  Y +R     +    R  +   T +IT        
Sbjct: 693 LRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVA 752

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +            + I+ ++  G   R    D  +  RS +G+R   +     +  +
Sbjct: 753 VKTVD---------GSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATV 803

Query: 842 VAV 844
             V
Sbjct: 804 AKV 806


>gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
 gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
          Length = 811

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V      N   IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDTVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V++++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 873

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/909 (38%), Positives = 526/909 (57%), Gaps = 73/909 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V +  E+  S+L Y+++VI+ RA+PD+RDGLKP  RRIL+ M ++ +    K 
Sbjct: 2   ENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKT 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC++I G+ MG YHPHG+AAIY  L  MAQDWS+R +L+ GQGNFG+ DGDPPAA RYT
Sbjct: 62  RKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L      L+ DL KDTVDF P YD    EP V  + +PN+LVNGG GIAVGMATN+P
Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG  AVIDNP + ++ L + I+GPDFPTG  +LG +GI N + TGRGS+ IR
Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E T   ++ +++ E+PY VN+AA+ E+IAEL ++K + DI+ +RD SD +   + 
Sbjct: 242 GKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSD-EKTCIE 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A   V++NQLY+ TS+++ F+VNM+A++  +P+   ++  +  ++  R EVVVR
Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+YLL  A   A  L    +A+ ++D+ + IIR S N + AR  L   +++    + L 
Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLG 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI   +   G       +E Q  +IL+LRL +LT L  D I  E   L + IK+ LDIL
Sbjct: 421 ILIRSQASIQGDR--YVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDIL 478

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++ SR+LGI+K EL ++KD+  TPR TRI+    DM  ED I  + M+VT++H GY+KR 
Sbjct: 479 ANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTITHSGYIKRT 538

Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             + YR Q RGGKG      R      + DF+  LF    H  ++FF++ G VY ++V+ 
Sbjct: 539 NSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVDRVYE 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPF--PEDESSWNNLY------VVFATKHGNV 657
           +   +  A+G+ + N+L L   E I  I+      DE   +  +      VVFATK G V
Sbjct: 599 IDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATKDGTV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+DF    ++G IA+ L+  + +++ E  +  ++I+L T  G  +RFP   +R   
Sbjct: 659 KKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPEEDLRT-Q 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN++GVRGI    GD V+++AIV                                    
Sbjct: 718 GRNTIGVRGIRPRAGDYVVALAIVDP---------------------------------- 743

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              ++ +L  SE G GKRTS  ++R   R G GI+  + +  ++
Sbjct: 744 -------------------QKTLLVASENGLGKRTSFDEYRTQGRGGTGIKTMNCT--DK 782

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V+   V+D D+++L++  G  +R+ V  +R   RAT+GV + +  + E +  +  +
Sbjct: 783 TGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLNEGESIQDISIV 842

Query: 898 RESEIVDEA 906
              +  +EA
Sbjct: 843 IPDDEDEEA 851


>gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
 gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
          Length = 895

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/858 (42%), Positives = 528/858 (61%), Gaps = 38/858 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL+Y+++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WNK
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K +H +L DL K+TVDF PNYDGS  EP +L  + P +L+NG  GIAVGMATN
Sbjct: 122 YTEIRLEKISHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DGC+  + NPD  +D L+E I  PDFPTG +I G +G++  Y TGRG ++
Sbjct: 182 IPPHNLSEVIDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIYGYSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +HIE    G+R+ I++ EIPYQVNK  + EKIA+LV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHIEDFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG  ADV+LN L++ T LQ  F +N+VAL   +P+   L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVADVVLNNLFKLTQLQDTFGMNLVALVNGQPKLLNLKELVVYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+  H L GLA+A+AN+DE ++II+ S +P+ A   LM R W++S +K
Sbjct: 362 ITRRTVFELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVK 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            L+  +D+                  Y + +DG  YLS  QTR IL + L RLTGL ++ 
Sbjct: 422 SLLSRVDEDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDE 530
           I +   +    I + LDILS   R+  II +EL+++K+E      RR++I    ++ E E
Sbjct: 482 IISSYEAAMDAITDLLDILSKPERITAIIGEELIAIKNEYTIKDARRSQIEYNAVEFETE 541

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I   DMVVT+S+ GY+K  PLS Y+AQ RGGKG+    M+D DFV  LFI +TH  VL
Sbjct: 542 DLITPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVL 601

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSSLG +++ KVW +P G   ++G+ ++N+  L + E+IT ++P    +   ++ ++  
Sbjct: 602 CFSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPI---KQFSDDQFIFL 658

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  LS +    +   IA+ LD  D ++  E     +DI+L +  G+ VRF  
Sbjct: 659 ATAKGVVKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDE 718

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRR 763
           S++R   GR+S GV G+ L +G  +IS+ +       VL A  +   +   +   +   R
Sbjct: 719 SSVRA-TGRSSRGVLGMRLEEGQSIISLIVSKNENAYVLTATENGYGKRTPVVEYTRHGR 777

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
              G     TS +N   V   + +E           I+ ++  G   RT     R   R+
Sbjct: 778 GTKGMIAIQTSERNGKVVAAVLVDE--------SDEIMLITTDGIVVRTKVAPIRELGRA 829

Query: 824 GKGIRATDVSKINEIGAL 841
            +G++   +    ++  +
Sbjct: 830 TQGVKLIRIDNDTKLKGV 847


>gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 811

 Score =  714 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/894 (40%), Positives = 546/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI +AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIDAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIETLIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++    RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYDIMKKELLELKEKYGDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGGKG S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         VVF TK G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---VVFITKKGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+++ V      N   IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTREDDDLIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDAVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 830

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/850 (41%), Positives = 530/850 (62%), Gaps = 44/850 (5%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E +     +  + I  + I DEM+NSY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M 
Sbjct: 16  DEPLDIKPTDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMK 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+ ++K Y K AR+ G+V+GKYHPHG+ A+YD+L RM Q++SLR  LI+GQGNFGS+D
Sbjct: 76  EAGMTYDKAYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSID 135

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE R+ + ++ +L D+ K+TV +RPNYDGS +EP VL AR PN+L+NG  G
Sbjct: 136 GDSAAAMRYTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTG 195

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNLGEV+D  + +I++P+  + +LMEI++GPDFPTG VILG  GIK+AY
Sbjct: 196 IAVGMATNMAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVILGHQGIKSAY 255

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG I IR V+ IE+   D+++IVV+E+PYQVNK+ ++E IA LVREK+IV I+DLRD
Sbjct: 256 ETGRGPIKIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRD 315

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RV IEL R  + +VILNQLY++T +Q+ F +  +AL    P   TL  +L+ +
Sbjct: 316 ESDRDGIRVSIELTRNTNPEVILNQLYKHTQMQTTFGIINLALVDNIPRELTLKELLQIY 375

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V+++R+ + + KA ++AH+L GL IA+ ++DEV+ +IR S   + A+  LM R 
Sbjct: 376 LEHRIDVILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTR- 434

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L EVQ +AIL++RL +LTGL R  I +E   L 
Sbjct: 435 -------------------------FGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELV 469

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I++  DI+ S  R   IIK+EL ++++     RRT I    ++ EDED I  E+++VT
Sbjct: 470 KLIEDLKDIIESDERKYSIIKEELHAIRERFADKRRTEITGSHVEFEDEDLIPVEEVIVT 529

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +++ GY+KR+P+  Y  Q RGGKG  G+  +++D V D+FI STH  ++FF++ G V+ +
Sbjct: 530 ITNSGYIKRMPVDTYSQQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWK 589

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP GS Q++GKA++N+L L + E +T  +   E E    + ++  AT+ G V++  
Sbjct: 590 KVYGLPEGSRQSKGKAVVNLLDLAENESVTATITVKEFEE---DKFLFMATRMGTVKKTP 646

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF  + ++G IA+KLD  DE+++V       +I++ ++ G+ +RF    +R    R +
Sbjct: 647 LSDFSNVRKAGIIALKLDEGDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPMG-RTA 705

Query: 722 VGVRGISLAKGDQVISMAIV------LHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GVRG+ L   D V+S+ IV      L    +   +          +R   G    +TSL
Sbjct: 706 RGVRGMRLTGDDIVVSLDIVDLSTKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSL 765

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +N   +     +E        E  ++  S +G   R    D R   R+ +G++  +V   
Sbjct: 766 RNGPVINVKAVKE--------EDEVMVTSSEGIFIRIPVKDIRAQGRNTQGVKIMNVRPG 817

Query: 836 NEIGALVAVF 845
           +++  +  + 
Sbjct: 818 DKVVGVARIK 827



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 23/240 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGV--RG 726
           + + LD  DE+++       N +    K G   RF +  ++         +   G+  + 
Sbjct: 404 LMIALDHIDEVIA--LIRGSNAVD-EAKEGLMTRFGLDEVQAKAILDMRLQKLTGLERQK 460

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I    G+ V  +  +       + +   +K      R    D          + + G+  
Sbjct: 461 IEDEHGELVKLIEDLKDIIESDERKYSIIKEELHAIRERFADKRR-------TEITGSHV 513

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E   ++L   E+ I+T++  G+ KR     +   +R GKG+   +  + + +  +   F 
Sbjct: 514 EFEDEDLIPVEEVIVTITNSGYIKRMPVDTYSQQHRGGKGVIGMETKEQDVVEDI---FI 570

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            + +D ++  +++G +    V  +   SR +KG   V +   A++E V +   ++E E  
Sbjct: 571 SSTHDYLMFFTNRGKVHWKKVYGLPEGSRQSKGKAVVNLLDLAENESVTATITVKEFEED 630


>gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
 gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
          Length = 839

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/911 (36%), Positives = 521/911 (57%), Gaps = 97/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP+VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG ++IR
Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++    ++ IVVTE+PYQV+ + +L+K ++LV+E R+  I D+RDES R   R+V
Sbjct: 243 AKAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FSVN +AL   +P+   L  ++  FV  R +VV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++VQ  AIL L L R+  +     + E      EI++  
Sbjct: 406 -------------DLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +      DE   +N Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R    RNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEEKVRAVG-RNSQGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L  + D+V+ M  + +                                          
Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                     +E+ +L VSE G+GKR+   D       +RI+NR GKG++   +++  + 
Sbjct: 711 ----------REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + + +++++  G  IR+ ++ +RI  RAT+GV + +    + + +V ++ 
Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVM 818

Query: 899 ESEIVDEAEST 909
           + +  +  E  
Sbjct: 819 KEDDDESTEEA 829



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 529 DEDCIVREDMVVTVSHLGYVKR-------VPLSVYRAQRRGGKGRSGVVMRDED----FV 577
                 RE+ V+ VS  GY KR          +VYR   RGGKG   + + ++      +
Sbjct: 705 IAIENPREETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITEKTGQLVAI 764

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             +        ++  +  G   +  +  L I     +G  LINI   +    +T +M   
Sbjct: 765 KSVLEG---EDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVMKED 821

Query: 638 EDESSWNNLY 647
           +DES+     
Sbjct: 822 DDESTEEAPT 831


>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
 gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
          Length = 821

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/843 (42%), Positives = 527/843 (62%), Gaps = 47/843 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+
Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+L +KD     RRT I  G ++ +EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++++GE++T ++      S   + Y +F TK G  +R  +S F  I
Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVG---SFDEDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     +  I++ T+ G  VRF    IR    R + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSMG-RTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L  GD+V+ M IV          +  Y +R     +    R  +   T +IT        
Sbjct: 693 LRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKNGPMVA 752

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +            + ++ ++  G   R    D  +  RS +G+R   +     +  +
Sbjct: 753 VKTVD---------GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDEELVATV 803

Query: 842 VAV 844
             V
Sbjct: 804 AKV 806


>gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
 gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
          Length = 837

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/912 (36%), Positives = 525/912 (57%), Gaps = 98/912 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I++EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I G+V+GKYHPHG+ A+YD + RMAQ+WSLR  L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+N DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG +++R
Sbjct: 183 PHNLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++    +E IVVTE+PYQV+ + +L+K ++LV+E ++  I D+RDES R   R+V
Sbjct: 243 AKAEFQEV-RGKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FS+N +AL   +PE+  L  ++  FV  R EVV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSINNIALVKGRPEQLNLKDLIYHFVEHRHEVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q  AIL L L R+        + E      EI++  
Sbjct: 406 -------------DLIAEFDLTDIQAEAILALALRRINKALILQTKEEYEQKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++ Q ++I   +      DE   NN Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R    RNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRAVG-RNSQGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L  + D+V+ M  + +                                          
Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                     +E+ +L VSE G+GKR+   +       +RI+NR GKG++   +++  + 
Sbjct: 711 ----------REETVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + + +++++  G  IR+ ++ +RI+ RAT+GV + +    + + +V ++ 
Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDSIAAVTKVM 818

Query: 899 ESEIVDEAESTE 910
           + +  DE ++ E
Sbjct: 819 KED-DDETDAAE 829


>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
 gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
          Length = 827

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/911 (39%), Positives = 549/911 (60%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDRLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLT L RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTCLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL +K++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIADLNGILKSEDRLNEVVKIELLEIKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R
Sbjct: 627 NLSEFGSNRSCGVRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMG-R 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV GI L + D V+   ++                                      
Sbjct: 686 NARGVIGIRLNENDFVVGAVVISD------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 710 ----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    
Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAEST 909
           + E  +  E++
Sbjct: 810 KEEEPENLETS 820


>gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11]
          Length = 811

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/893 (40%), Positives = 547/893 (61%), Gaps = 86/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++    RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGGKG S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         VVF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFLPEKE---VVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V      N   IL+ T  G C RF    IR   GR++ GV+ I+L K
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDMVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+    V++  + G +V+V  V++++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVNE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++ ++  G +IR  +NEI    RAT+GV I   A DE+V ++ +I++ E ++
Sbjct: 758 ELMCITSNGIVIRTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDLE 810


>gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1]
          Length = 846

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/859 (42%), Positives = 518/859 (60%), Gaps = 30/859 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+A++ NP+  +D L+EII  PDFPT  +I G  G+K AY TGRG +V
Sbjct: 182 IPPHNLNEVVDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTMGVKEAYRTGRGRVV 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E    G+R+ +++ E+PYQVNK +++EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHVEDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+AF   R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFFGHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KA    HVL GLA+A+AN+DE++ +I+ +P P  A++ LM R+W +  ++
Sbjct: 362 ITRRTVFELGKAER-GHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVE 420

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 421 EMLKRAAMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  +I  EL +++ +     R+ IV    D+  ED I  +D+VV
Sbjct: 481 MDVIADLLDILAKPERVTQMIVDELATIRQQFGDSCRSEIVHNAQDLSLEDLITPQDVVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 541 TLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYW 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K  +    +  A  +A    L   +G      +P  E +    N ++  AT  G V++ 
Sbjct: 601 LKYTKCRKAAASAV-QAYRQPLPAGRGREDQCHLPVKEFDE---NHFIFMATAQGTVKKT 656

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F    R+G IA+ LD  D ++  E     NDI+L +  G+ V F    +R    RN
Sbjct: 657 ALVEFSNPRRAGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAMG-RN 715

Query: 721 SVGVRGISLAKGDQVISMAI-------VLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           + GVRG+ L    +VIS+ I       VL A  +   +   +       R   G     T
Sbjct: 716 TRGVRGMKLMPKQRVISLLIAEDDKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIAT 775

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +N S V   +  +        E  I+ ++  G   RT   + R   R+ +G+   ++ 
Sbjct: 776 SDRNGSVVGARLVND--------EDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLG 827

Query: 834 KINEIGALVAVFPVNDNDQ 852
           +  ++  L  V   +D D+
Sbjct: 828 ENEKLSGLEKVVETDDADE 846


>gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994]
 gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994]
          Length = 830

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/893 (39%), Positives = 536/893 (60%), Gaps = 89/893 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D  +   I  ++I D +++SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +  
Sbjct: 2   NDLLDNSEINDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             KY K ARI G+V+G+YHPHG+ ++YDAL RMAQ +++R  L++GQGNFGSVDGD  AA
Sbjct: 62  GAKYKKSARIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + A  LL DL KDTVD   NYDG+ QEP VL  R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTEARMTRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HN  EV+   V ++DNP+  L  +M+ I+ PDFPTG  I G+ GI +AY TGRG 
Sbjct: 182 TNIPPHNPNEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIYGKKGILDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  +HIE    +++ IV+ E+PYQVNKA ++E IA+LV++K I  I+++RDESDR+G
Sbjct: 242 IRVRAKTHIE-KKSNKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A ++++LN LY+ T++++ F + M+++   +P  FTL+ +L  F+  R+ 
Sbjct: 301 IRVVIELKRDAMSEIVLNNLYKSTNMETTFGIIMLSVFNQEPRVFTLLEMLGHFINHRKT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V++RRT + L KA+ RAH+L GL  A+ +++ ++++IR S + ETA+  L++        
Sbjct: 361 VIIRRTIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEE------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 S +Q +AIL++RL RLTGL RD I NEL  +   I+  
Sbjct: 414 -------------------FGFSPIQAQAILDMRLQRLTGLERDKIENELKEILTHIEYL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL S   L GIIK+E + + ++ + PR T I +   D+  ED I  E MVVT+SH GY
Sbjct: 455 ESILRSEEVLKGIIKEEFVELVEQYNIPRVTDIEDNYDDINIEDLIPNEPMVVTISHRGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRVPL+ Y  Q RGGKG+  V   D+DF+   +  +TH +++F +  G ++  KV+++P
Sbjct: 515 IKRVPLAAYEKQIRGGKGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  A+GKA++N+++L   E+I +I+P  + +   +   +VF T++G V+R  L++F  
Sbjct: 575 EGSRTAKGKAVVNLINLEADEKIRSIIPTTDFDEKKS---LVFFTQNGIVKRTALNEFSN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I  +G  A+ LD  D +++    T+E   + + TK  QC++F I   R   GR++ GVRG
Sbjct: 632 IRSNGVRAIVLDEDDALITAHIATEETKYLFIVTKFAQCIKFEIDKTR-DQGRSTRGVRG 690

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I    +GD V+   I+                                            
Sbjct: 691 IKFKIEGDVVVDANII-------------------------------------------- 706

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                   K  E+ IL VSEKG GKRT++ ++R++NR+G G+ A  ++       +V   
Sbjct: 707 --------KSDEEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGT-TVVGCV 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V++   ++ ++  G +IRV +  I  + R T GV I    K + V S+ R  
Sbjct: 758 MVDETMDLMALTKAGKMIRVDMQTIAKSGRNTSGVYIV---KGDDVASISRCP 807


>gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
          Length = 841

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/911 (36%), Positives = 521/911 (57%), Gaps = 97/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP+VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG ++IR
Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++    ++ IVVTE+PYQV+ + +L+K ++LV+E R+  I D+RDES R   R+V
Sbjct: 243 AKAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FSVN +AL   +P+   L  ++  FV  R +VV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++VQ  AIL L L R+  +     + E      EI++  
Sbjct: 406 -------------DLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +      DE   +N Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R    RNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEDKVRAVG-RNSQGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L  + D+V+ M  + +                                          
Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                     +E+ +L VSE G+GKR+   D       +RI+NR GKG++   +++  + 
Sbjct: 711 ----------REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + + +++++  G  IR+ ++ +RI  RAT+GV + +    + + +V ++ 
Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVM 818

Query: 899 ESEIVDEAEST 909
           + +  +  E  
Sbjct: 819 KEDDDESTEEA 829



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)

Query: 529 DEDCIVREDMVVTVSHLGYVKR-------VPLSVYRAQRRGGKGRSGVVMRDED----FV 577
                 RE+ V+ VS  GY KR          +VYR   RGGKG   + + ++      +
Sbjct: 705 IAIENPREETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITEKTGQLVAI 764

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             +        ++  +  G   +  +  L I     +G  LINI   +    +T +M   
Sbjct: 765 KSVLEG---EDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVMKED 821

Query: 638 EDESSWNNLY 647
           +DES+     
Sbjct: 822 DDESTEEAPT 831


>gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549]
          Length = 868

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/859 (44%), Positives = 542/859 (63%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS  + L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQGDVEDNQDI 852



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R  GK    + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGK--IAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQGDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
          Length = 828

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/912 (40%), Positives = 558/912 (61%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDRLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIADLNGILRSEDRLNGVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GV GI L + D V+  A+V+  D +                               
Sbjct: 686 RNARGVIGIRLNENDFVVG-AVVISGDGNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V   
Sbjct: 752 GNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1]
 gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1]
          Length = 826

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/890 (38%), Positives = 531/890 (59%), Gaps = 87/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y K 
Sbjct: 23  EVKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKS 82

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R
Sbjct: 83  ARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEAR 142

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  LL D+ KDTVDF  NYD + +EP VL +R PN+L+NG  GIAVGMAT+IP H 
Sbjct: 143 MATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHR 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+++  + V++NP   L  +++++ GPDFPTG +I G+ GI  AY++GRG I +R  +
Sbjct: 203 LDEIIEALIFVLENPQASLSDILDLVPGPDFPTGGIIHGKQGILEAYSSGRGRIRVRAKT 262

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+    RE I++ E+PYQ NKA ++E+I+EL R+K +  I+++RDESDR+G RVVI+L
Sbjct: 263 RLERI-EGRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVIDL 321

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A ++LNQLY+ + ++S FS+ ++A++  +P  F L+ +LK F+  R+ +V+RRT 
Sbjct: 322 KREANAQIVLNQLYKSSGMESTFSIILLAIHNKEPRIFNLLELLKLFLMHRKTIVIRRTI 381

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ R H+L GL +A+ N + V+ +I+ S +  +A+  L+Q               
Sbjct: 382 YELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQ--------------- 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q++AILE+RL RLTGL ++ I  E   L   I+E   IL   
Sbjct: 427 -----------AHQLSQEQSKAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHA 475

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +L  +IK+ELL +K++  T R+T+I E    + DED I REDMVVT+SH GY KR+PL 
Sbjct: 476 DKLNHLIKEELLEIKEKFSTARKTQIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLK 535

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +Y  Q+RGGKG+      ++DF+   F  +TH  +LF +  G +Y  KV+++P     A 
Sbjct: 536 IYEQQKRGGKGKISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAI 595

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKAL+N++ +  GE+I  I+  P+      + ++VF TK G ++R +LS F ++ R G  
Sbjct: 596 GKALVNLIDIEPGEKICAILSTPD---FSPDKFLVFFTKKGMIKRTQLSAFGRV-RIGVR 651

Query: 675 AMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +++L   D +++ +    EN  + + T  G C+RF  S +R    R ++GV G+ L +GD
Sbjct: 652 SIELKEGDALVTAQILEHENQELFMATAKGMCIRFKASGVRDMG-RTAMGVIGMRLKEGD 710

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI  +I L                                                   
Sbjct: 711 FVIGASIALS-------------------------------------------------- 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  +LT+S KG GK+T    +R+ NR G G+    ++   + G LVA+  V++   +
Sbjct: 721 --DQHKLLTISSKGMGKQTLIGAYRLQNRGGLGVIGAKLTP--KTGNLVAIVHVDEGQDL 776

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L++  G +IR+P+  IR   R   GV + S   D  V +    +E+E+ 
Sbjct: 777 MLLTKNGKMIRMPMESIRETGRHASGVKLVSVEGDGVVYANTCPKENEVE 826


>gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 868

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/859 (44%), Positives = 541/859 (62%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAALVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQDDVEDNQDI 852



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R  GK    + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGK--IAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAALVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
 gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
          Length = 868

 Score =  712 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/859 (44%), Positives = 541/859 (62%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQDDVEDNQDI 852



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R  GK    + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGK--IAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112]
 gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG]
 gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112]
 gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG]
          Length = 868

 Score =  712 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/859 (44%), Positives = 542/859 (63%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS  + L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQDDVEDNQDI 852



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R  GK    + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGK--IAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
 gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
          Length = 827

 Score =  712 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/912 (39%), Positives = 554/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  +
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIES 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEERLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SISYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKKGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+GI LA+ D V+   ++                                     
Sbjct: 686 RTTRGVKGIRLAENDFVVGAVVISD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  NR GKGI    +++  + 
Sbjct: 711 -----------------DGNKLLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V   
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E+T
Sbjct: 810 PKEEEPENLENT 821


>gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 868

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/859 (44%), Positives = 541/859 (62%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQDDVEDNQDI 852



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R  GK    + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGK--IAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908]
 gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018]
 gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017]
          Length = 828

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/912 (40%), Positives = 556/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+  ++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTTIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDF-IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F    + SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASHLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L + D V+  A+V+  D++                               
Sbjct: 686 RTTRGVRGIKLNENDFVVG-AVVISDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +T   ++VV V   
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINT--TDKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
          Length = 828

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/912 (40%), Positives = 557/912 (61%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDF-IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F    + SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+  A+V+  D++                               
Sbjct: 686 RTTRGVMGIRLNENDFVVG-AVVISDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V   
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
 gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
          Length = 821

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/843 (42%), Positives = 526/843 (62%), Gaps = 47/843 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY TGRGSI+
Sbjct: 183 IPPHQLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I++ E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIDELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL+   +++ II+ E+L +K+  +  RRT I  G ++ +EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++ +GE++T ++      S  ++ Y +F TK G  +R  +S F  I
Sbjct: 577 FGRTAKGLPIVNLLNIEKGEKVTAMIRVA---SFDDDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     E  +++ T+ G  VRF    IR    R + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGEKQVIIGTRDGMLVRFQEDDIRSMG-RTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L  GD+V+ M IV          +  Y +R     +    R  +   T +IT        
Sbjct: 693 LRDGDEVVGMEIVEPGQEILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKNGPMVA 752

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              +            + ++ ++  G   R    D  +  RS +G+R   +     +  +
Sbjct: 753 VKTVD---------GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATV 803

Query: 842 VAV 844
             V
Sbjct: 804 AKV 806


>gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595]
 gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 854

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/921 (35%), Positives = 505/921 (54%), Gaps = 99/921 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +I  +      I  V +  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M
Sbjct: 1   MAEEMIQYNHGL---IKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   +  + K  +I G+VMG +HPHG+AAIYD + R+ Q W++R  L+ GQGNFG+ 
Sbjct: 58  WDGGYRPDSSFSKSVKIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTA 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                AA RYTE R+ + A  ++ D+ ++TVDF PN+DGS QEP VL AR+PN+LVNG  
Sbjct: 118 GDLGAAAPRYTEARMAQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSE 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV  G    +DNP+   + L+    E ++GPDFPTGA ILG  G
Sbjct: 178 GIAVGMATRIPPHNLREVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TG GSI  R +  +++    R+ +VVT++P+QVN   +L+K+ E +++ R+  I
Sbjct: 238 IESMYRTGNGSITQRAIVEVDEI-NGRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDES  R G R+VI LK+ A A V+LN LY++T +Q+ F  NM+AL    P   +L 
Sbjct: 297 ADIRDESSGRAGQRIVIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVDGVPRTLSLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V  + EV+ RRT++ L K  +R  +L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 357 GFVRHWVNHQIEVIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEARE 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + ++E+Q   IL ++L RL  L R  I +
Sbjct: 417 GLMK--------------------------LLDINEIQADHILAMQLRRLAALERQKILD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E +       +  DIL+   R   I+  E+  +  +    RRT+I+    ++ DED I  
Sbjct: 451 ERDEKLALRDDYQDILAKPERQRTIVSDEVGDIVAKFGDDRRTKILPFDGEVSDEDLIPE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+VVT++  G+VKR  +S YRAQ RGGKG  G  +RD+D V    + STH   LFF+++
Sbjct: 511 DDVVVTITRSGFVKRTKVSEYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNM 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G+  A+G+ + N+L+    ERI +++     + +    Y+V AT+ G
Sbjct: 571 GRVYRIKGYELPEGARDAKGQHIANLLAFQPDERIASMVSIRSYDQAD---YLVLATEDG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +L+D+      G IA+KL  R     D ++S        D+LL ++ GQ +RF  
Sbjct: 628 LVKKTRLADYDSARTGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTA 687

Query: 711 SAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
               +   GR + GV G+     D++++M                               
Sbjct: 688 DDATLRPMGRATSGVTGMKFRGDDRLLAM------------------------------- 716

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                 ++  +   +  V+E G+ KRT    +R+  R+G GI+ 
Sbjct: 717 ----------------------DVVDEGAEVFVVTEGGYAKRTDIEQYRVQGRAGLGIKV 754

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +V +    G LV     +  D+++++ + G ++R  V+E+ +  R T+GV   +  K +
Sbjct: 755 ANVVEA--RGDLVGALITHPGDEVMVIMESGKVVRSAVDEVSLTGRNTQGVKFATPDKGD 812

Query: 890 RVVSVERIRESEIVDEAESTE 910
           +++S+    E +  DE  +T+
Sbjct: 813 KIISIALNLEKQEDDEEVTTD 833


>gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946]
 gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/888 (41%), Positives = 544/888 (61%), Gaps = 85/888 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +++I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  + +     Y 
Sbjct: 8   NQDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLAISSRSPYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+  ++GQGNFGS+DGD  AA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSIDGDNAAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+   A  LL DL KDTVDF PNYD S  EP VL +R PN+L+NG  GIAVGMATNIP 
Sbjct: 128 ARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H L E++DG + +IDNP+  L+ +ME I+GPDFPT  +I G+ GI  AY TGRG + IR 
Sbjct: 188 HCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIFGKKGIIEAYRTGRGRVRIRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE   G+++ IVV E+PYQVNK  ++E+I  LV+EK I  I+++RDESDR G R+VI
Sbjct: 248 KTHIE-KKGNKDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIRDESDRDGIRLVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A +D++LN LY+ T+++  F V ++A++  +P+ FTLI +L+ F+  R+ V++RR
Sbjct: 307 ELKREAMSDIVLNNLYKSTNMEVTFGVILLAIHNKEPKIFTLIELLQLFLRHRKTVIIRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ +AH+L GL IA+ N+DE++ +I+ S + ++A+  L++R            
Sbjct: 367 TIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIER------------ 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSEVQ  AIL++RL RLTGL RD I NEL  L +EI+   DIL 
Sbjct: 415 --------------FNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILR 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +IK+ELL +KD+  + R T IV+   D++ ED I  E MVVT++H GY+KRVP
Sbjct: 461 SEALLNNLIKEELLELKDKFKSKRITEIVDDYDDIDVEDLIANEPMVVTITHRGYIKRVP 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  Q+RGGKG+  V   D+DF+   F+  TH +++F +  G +Y  KV+++P GS  
Sbjct: 521 LKQYEKQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEGSRT 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+GKA++N++ L   E+I  I+P  + + + +   + F TK+G ++R  LS+F  I   G
Sbjct: 581 AKGKAVVNLIQLQADEKIMAIIPTTDFDETKS---LAFFTKNGVIKRTNLSEFKNIRSVG 637

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ LD  D +++ +  TQE  ++ + TK G C+RF +   R    R + GV GI   +
Sbjct: 638 VRAITLDDDDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREIG-RTARGVTGIRFKE 696

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            +  +  A V++ D +                                            
Sbjct: 697 ENDCVVGAAVIYNDQE-------------------------------------------- 712

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +LTV+EKG GKRT++ ++R+ NR GKG+ A  ++   +   LV V  V+++ 
Sbjct: 713 -------ELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTP--KTADLVGVVIVDEDK 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++ ++  G +IRV +  IR A R T GV + S    + V S+ R  +
Sbjct: 764 DLMALTSSGKMIRVDMETIRKAGRNTSGVKVVSVEGKDVVQSLARCPK 811



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 89/266 (33%), Gaps = 61/266 (22%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  T  G ++R  L  + +  R   GKIA+     D I S       + ++  T 
Sbjct: 503 NEPMVVTITHRGYIKRVPLKQYEKQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTD 562

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I     R + G   V  I L   +++  MAI+   D D  + + +    
Sbjct: 563 RGQLYWLKVYKI-PEGSRTAKGKAVVNLIQLQADEKI--MAIIPTTDFDETKSLAF---- 615

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F+
Sbjct: 616 --------------------------------------------FTKNGVIKRTNLSEFK 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
               + + +    ++  ++ G + A     +   + +V+ KG  IR  V + R   R  +
Sbjct: 632 ----NIRSVGVRAITLDDDDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREIGRTAR 687

Query: 879 GVVIFST-AKDERVVSVERIRESEIV 903
           GV       +++ VV    I   +  
Sbjct: 688 GVTGIRFKEENDCVVGAAVIYNDQEE 713


>gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 829

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 535/906 (59%), Gaps = 91/906 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I S+++      +++I+ E++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M
Sbjct: 1   MTEPSIESNQQP-----TIAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G  +N+ Y+K ARI G+V+GKYHPHG+ A YD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 56  RELGNTYNRPYIKSARIVGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSM 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ +    L+ DL K+TVDF PNYD S QEP VL +R PN+L+NG  
Sbjct: 116 DGDSAAAMRYTEARMTRLDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSE 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT IP HNL EV++G +A++DNP+I +  LMEII GPDFPTG  I GR GI+ A
Sbjct: 176 GIAVGMATKIPPHNLTEVINGLIALVDNPEITVHQLMEIITGPDFPTGGFICGRAGIREA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  +HIE+     E IV+TEIP+Q NKAA++EKIA L++EKRI  IA++R
Sbjct: 236 YETGRGVIVMRSKTHIEQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV++L++    D+++NQLY+ T LQ  F + ++ +   KPE   L  IL+ 
Sbjct: 296 DESDRHGVRVVLDLRKDEIPDIVINQLYKMTPLQKSFGIILLCIVNNKPEILNLKQILQH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R+ VV RRT + L KA +RAH+L GL IA+ +LDEVV +IR S NP  A+  L+ R
Sbjct: 356 FLAHRKTVVYRRTAFELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q + IL++RL RLTGL RD I ++ N +
Sbjct: 416 --------------------------FELSEIQAQTILDMRLQRLTGLERDKIISDYNEI 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     +L+  + ++ II++E   +++E    RRT I++   ++  ED I  E+MVV
Sbjct: 450 QAKISWLKQVLADDNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KR PL++YRAQRRGGKG  G+V  ++DFVT L+  S+  + LFF++ G V+ 
Sbjct: 510 TVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTLEDDFVTSLYTASSLDTFLFFTNKGRVFW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP+    ARGKA            I  ++   EDE                    
Sbjct: 570 RKVYELPLAGRTARGKA------------IVNLLELGEDE-------------------- 597

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAG 718
                       K+A  L   D          ++ + +   TK G+  +  IS  +    
Sbjct: 598 ------------KVAAILPVAD------LANMDDTVSVLTVTKQGRVKKTFISEYKRPLR 639

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           +   G   +++   D+++S AI    D  +      +     +  + +            
Sbjct: 640 KGKFG---LTIRDDDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAMGRLAAGVK--- 693

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
               G+  E     +   +  ILTV+E G+GKRT+  ++++ +R GKG+     S+ N  
Sbjct: 694 GITLGDDDEVVGVAVLKSDASILTVTENGYGKRTAVSEYKLQSRGGKGVFTIKTSERN-- 751

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V V PV D DQ++LV++ G +IR+P++ +RI  R T+GV + +  + E VV +  + 
Sbjct: 752 GNVVGVLPVVDEDQVMLVANSGKVIRMPMDTVRIIGRNTQGVRLINLDEGELVVDMSMLA 811

Query: 899 ESEIVD 904
             E VD
Sbjct: 812 REEGVD 817


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/843 (42%), Positives = 517/843 (61%), Gaps = 86/843 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F + +    + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKDVQE---DGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R    R + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPMG-RTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +                         D + +   +N      N+ E + Q
Sbjct: 693 GDVAVCMDIAVE------------------------DEKLLVVSENGYGKRTNLDEYKVQ 728

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                                        NR G G+    VS  ++ G +V      ++D
Sbjct: 729 -----------------------------NRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QII 854
           +++
Sbjct: 758 ELM 760



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 85/220 (38%), Gaps = 17/220 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH----- 743
              +E+ ++  T  G   R   S +     R   G++ ++  + D V ++ +        
Sbjct: 497 LIQEEDVVITLTHTGYIKRIS-SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLL 555

Query: 744 --ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                    +I   +   A R     +   I  L+ D  ++  +S +  QE    + ++ 
Sbjct: 556 FFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSFKDVQE----DGYLF 611

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             ++ G  K+T   DF+   ++G  + A ++ + +E   L+       +  II V+  G 
Sbjct: 612 MGTKLGIVKKTPLKDFKNIRKNG--LIALNLREGDE---LLRAKITYGDADIIFVTQDGN 666

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            IR    ++R   R   GV   S  + +  V ++   E E
Sbjct: 667 AIRFNETDVRPMGRTASGVKAISLREGDVAVCMDIAVEDE 706



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 97/230 (42%), Gaps = 21/230 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ DE+++         I+ ++K  +  +  +      + + +  +  + L    
Sbjct: 381 LIIALDNIDEVIN---------IIRSSKTSEIAKNTLIERFSLSEKQAAAILEMRLRRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERI-CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             + D++ +    L    DY   I    + +    +    + +   S +  + +E   +E
Sbjct: 432 GLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERRTQIEKQENE 491

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              ++L  +E  ++T++  G+ KR SS  +    R GKGI+A    + + +  +      
Sbjct: 492 IDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDFVENV---LVT 548

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSV 894
           + +  ++  + KG + ++   E+  A R  KG  + +      DE++ +V
Sbjct: 549 STHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 103/264 (39%), Gaps = 8/264 (3%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTT 700
                V+  T  G ++R     +    R GK   AM     D + +V   +  +++L  T
Sbjct: 499 QEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFT 558

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+  +     +   AGR + G   +++   +    +  VL      ++   +M     
Sbjct: 559 TKGKVYKIKAYEV-PDAGRTAKGTNLVNILPLEADEKIQTVLSFKDVQEDGYLFMGTKLG 617

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGKRTSSYDFRI 819
             +       +        ++     +E  +  +   +  I+ V++ G   R +  D R 
Sbjct: 618 IVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRP 677

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R+  G++A  + + +     V +    +++++++VS+ G   R  ++E ++ +R   G
Sbjct: 678 MGRTASGVKAISLREGD---VAVCMDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIG 734

Query: 880 VVIFST-AKDERVVSVERIRESEI 902
           ++ +    K  +VV     +E + 
Sbjct: 735 LITYKVSDKTGKVVGATVCKEDDE 758


>gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss]
 gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14]
 gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A
 gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 833

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/904 (38%), Positives = 531/904 (58%), Gaps = 91/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG A IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  ++ FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ NP   ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++VI+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q+ AILELRL +LTGL  D ++ E N L  +I     +
Sbjct: 413 ---------------LFGFSEAQSLAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTTIEMDAGDVRDIEDIIADESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F+++G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y++ ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLLLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIVNDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V    +                                       
Sbjct: 694 VSLKNEEDFVVSCQVVTDDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    E
Sbjct: 759 SVTDFDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSVNTESGE 818

Query: 906 AEST 909
            E +
Sbjct: 819 TEES 822


>gi|21228522|ref|NP_634444.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
 gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
          Length = 900

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/845 (43%), Positives = 534/845 (63%), Gaps = 47/845 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+T + I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+  +K Y K 
Sbjct: 17  GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+YD + RM QD+SLR  LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 77  ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+ K+TV F PNYDGS +EP VL AR PN+L+NG  GIAVGMATN+P HN
Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV+DG + +I+NP+  +  LM +I+GPDFPTGA ILG  GI++AY TGRG I +R V+
Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 256

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I++   DR+QI+VTE+PYQVNKA ++E IA+LVREK I  I+DLRDESDR+G RVV+EL
Sbjct: 257 EIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVEL 316

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            RG + +V+LNQLY++T + + F V  +AL   KP+   L  +L+ ++ +R E++ +RT 
Sbjct: 317 SRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTL 376

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + A++ L+                
Sbjct: 377 YDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLIDN-------------- 422

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L EVQ +AILE+RL RLTGL    I +EL +L  +I+E   IL+S 
Sbjct: 423 ------------FALDEVQAKAILEMRLQRLTGLETRKILDELEALVKQIEELRKILASD 470

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
                II+ EL  +KD+    RRTRIV    ++ DED I  ED+VVT+++ GY+KR+PL 
Sbjct: 471 ELKYEIIRTELSELKDKYGDIRRTRIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLD 530

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  QRRGG+G  G+ M++EDFV +LFI STH  +LFF++ G +Y +KV+ +P GS Q+R
Sbjct: 531 TYTMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSR 590

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L L +GE +  ++     E    + Y+  AT+ G V++  LS+F    R+G I
Sbjct: 591 GKAIVNLLELQEGEMVNAMISV---EEFAEDKYLFMATRAGTVKKTPLSEFRNPRRAGII 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGD 733
           A+ LD  DE++ V     + +I++ +K G+ +RF    +R    R + GVRG++L    D
Sbjct: 648 AVSLDEGDELVKVLLTDGKQEIMMVSKKGKAIRFSEEDVRPMG-RTARGVRGMTLEGPDD 706

Query: 734 QVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +V+S+ +V          D  + +R  Y       RR   G    +T+L+N         
Sbjct: 707 EVVSLDLVDETTTLLTVTDNGFGKRTEY-SQYPVHRRGGKGVITIVTNLRNGFVSNVKSV 765

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E        +  ++  S +G   R  + D  I  R+ +G+R  ++   +++G +  +  
Sbjct: 766 AE--------DDELMFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIKN 817

Query: 847 VNDND 851
             +++
Sbjct: 818 GKEDE 822


>gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 697

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 478/694 (68%), Gaps = 11/694 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+   E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDE---FSEDKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +  +G IA+ L   D ++ V+    EN+I+L 
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLF 696



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 6/162 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +       + +     +   +EL  +E  +
Sbjct: 480 LLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVV 539

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S  G+ K     D+    R GKG  AT +   + I  L+     N +D I+  S +G
Sbjct: 540 VTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVA---NTHDNILCFSTRG 596

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
              R+ V ++ +ASR  +G   V I    + ER+ ++ R+ E
Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDE 638



 Score = 46.1 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S  I +      ++ +  + H    +  +  D E         S      E+  + L + 
Sbjct: 524 SHDIDMEELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVA 583

Query: 797 EQF--ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
                IL  S +G   R   Y   +++R+ +G    ++  + E   + A+  V++  +  
Sbjct: 584 NTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK 643

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            I + +  GT+ + P+N+       + G++  +  +D+ ++ V+
Sbjct: 644 FIFMATGDGTVKKTPLNQFANV--RSNGLIAVNLREDDSLIGVD 685



 Score = 43.4 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
              +E       VV  +  G V+   LSD+    R   GK A K+   D I  +      
Sbjct: 527 IDMEELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTH 586

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  +  G+  R  +  +   A R + G   +++   ++   +  +L  D   +++  
Sbjct: 587 DNILCFSTRGKTYRLKVYQL-PLASRTARGKPIVNILPLEEGERITAILRVDEFSEDKFI 645

Query: 754 YMKHMSAQRR 763
           +M       +
Sbjct: 646 FMATGDGTVK 655


>gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 864

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/856 (43%), Positives = 540/856 (63%), Gaps = 32/856 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H LL D+ K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDN  + ++ L++ I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QIV+TEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I +D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIER 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS  S L+ ++K+EL+ ++D     R++ I+   LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L++ ERIT +MP  E    W   YV  +TK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        +VL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + +         ++ I+ +++ G   RTSS   R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVD--------NDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFPVNDNDQ 852
           +   L+++  V   D+
Sbjct: 834 K---LISLKVVKQEDE 846


>gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 864

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/856 (43%), Positives = 539/856 (62%), Gaps = 32/856 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H LL D+ K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDN  + ++ L++ I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             I E  +  + QIV+TEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 VDIHEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I +D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIER 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS  S L+ ++K+EL+ ++D     R++ I+   LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L++ ERIT +MP  E    W   YV  +TK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        +VL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + +         ++ I+ +++ G   RTSS   R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVD--------NDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFPVNDNDQ 852
           +   L+++  V   D+
Sbjct: 834 K---LISLKVVKQEDE 846



 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFV 577
           R+ +    +        E +V+  +  GY KR  +S YR  +R  +G   +   +    V
Sbjct: 726 RLHDNQKIVSVIVTNPDEGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKV 785

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               +V     ++  +  G + +    ++      A+G  LIN+ +    E++ ++    
Sbjct: 786 VVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRN---NEKLISLKVVK 842

Query: 638 -EDESSWNNL 646
            EDE + ++ 
Sbjct: 843 QEDEEAHDDQ 852


>gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
          Length = 827

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/911 (39%), Positives = 553/911 (60%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  + V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R
Sbjct: 627 NLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREMG-R 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV GI L + D V+   ++                                      
Sbjct: 686 NARGVIGIRLNENDFVVGAVVISD------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKGI    +++  + G
Sbjct: 710 ----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    
Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAEST 909
           + E  +  E++
Sbjct: 810 KEEEPENLETS 820


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/895 (40%), Positives = 527/895 (58%), Gaps = 87/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I  + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +++R
Sbjct: 183 PHNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIVGKSGIRKAYETGRGKVILR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+V
Sbjct: 243 SKAEIEEEK-GRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+A+V+LNQLY++T +Q  F + M+AL   +P+  +L  +LK ++ F+EEV+ R
Sbjct: 302 IELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLKHYIKFQEEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  LM R           
Sbjct: 362 RTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL+++L RLTGL R+ I  E   L   IK    IL
Sbjct: 411 ---------------FGLSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
           S +S LL IIK EL  +K +    RR+ I++G   D++ ED I  +D+V+T++H GY+KR
Sbjct: 456 SDKSLLLKIIKDELNEIKVKYGDERRSEIIQGEGNDIDIEDLIEEKDVVITLTHAGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y AQ+RGG+G   +  +++DFV  +   STH ++LFF++LG VY+ K +++P   
Sbjct: 516 LPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  LIN+            +P  ++E   N                          
Sbjct: 576 RTAKGMNLINL------------IPLDKEEKIQN-------------------------- 597

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                        ++ ++   ++  +++ TK G   +  +            G+  I+L 
Sbjct: 598 -------------VIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASI---RKNGLNAINLR 641

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+++S A V   D +          +      +       T +K  +  E    E   
Sbjct: 642 EDDELVS-ARVTTGDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLRED--DEVVS 698

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+  + +  L VSE G+GKRT    + +  R GKG+    +S+  + G L+    V D 
Sbjct: 699 MEVASENRDFLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISE--KTGLLIGARSVEDQ 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           D+++L++D G  IR+ V++I   SR   GV +  T  +E+VV++ ++  SE  D+
Sbjct: 757 DELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISENEDD 811



 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 115/275 (41%), Gaps = 20/275 (7%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E + ++       ++  ++  +  G +K+  L  Y + R+   G + + +R++D +   
Sbjct: 592 EEKIQNVIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASIRK--NGLNAINLREDDELVSA 649

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + +   ++++ +  G+  +     +      A G   +  ++L + + + ++      E
Sbjct: 650 RVTTGDCNIIYATKNGYAIRFHENDVRPMGRTATG---VKAITLREDDEVVSM------E 700

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
            +  N   +  +++G  +R  +  +    R GK  +     ++   ++   +   +++++
Sbjct: 701 VASENRDFLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISEKTGLLIGARSVEDQDELM 760

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L    G  +R  +S I     RN++GV  +     ++V++MA V  ++ + D      + 
Sbjct: 761 LINDSGIAIRINVSDIST-TSRNAMGVTLMRTVDNEKVVTMAKVNISENEDDCNNVCSEE 819

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                   S + E   +   D S E N S+E  +E
Sbjct: 820 NKD-----SNNNELTENNAMDISEEMNESKENIEE 849


>gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
 gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
          Length = 826

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/886 (40%), Positives = 535/886 (60%), Gaps = 89/886 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + +  KY K 
Sbjct: 9   DVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSFGAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD  AA RYTE R
Sbjct: 69  ARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAAMRYTEAR 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP HN
Sbjct: 129 MTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             E+++G  A+++NP+I L  +ME I+ PDFPTG +I G+ GI +AY TGRG I +R  +
Sbjct: 189 PTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVRAKT 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE   G+R+ IV+ E+PYQVNKA ++E +A LV++K I  ++++RDESDR G RVVIEL
Sbjct: 249 HIE-KKGNRDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRDGMRVVIEL 307

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ TS+Q+ F + M+++   +P  F LI ILK F+  R+ +++RRT 
Sbjct: 308 KRDAISEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGLIDILKHFINHRKTIIIRRTI 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+ RAH+L GL  A+  +D+V+R+IR S   E A+  L+                
Sbjct: 368 FDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSE-------------- 413

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE+Q  +I+ +RL RLTGL  + I NEL  L   I+    IL S 
Sbjct: 414 ------------FDFSEIQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSE 461

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L GII +E   V     T RRT I +   D++ ED I  E MVVT++H GY+KRVPL+
Sbjct: 462 DVLHGIIAEEFDEVLTTYTTKRRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLA 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG++ V   ++DF+ + F  +TH ++LF +  G ++  KV+R+P GS  A+
Sbjct: 522 SYEKQKRGGKGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSRTAK 581

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+++L   E+I +I+P  +      +  +VF TK+G V+R  LS+F  I  +G  
Sbjct: 582 GKAVVNLINLQADEQIQSIIPTTD---FSEDKSLVFFTKNGIVKRTNLSEFSNIRSNGVR 638

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           A+ LD  D +++ +   +    + + TKL QC++F I   R   GR++ GVRGI    +G
Sbjct: 639 AIVLDDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTRE-QGRSTRGVRGIKFKHEG 697

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+   I+   D +                                             
Sbjct: 698 DEVVDANIIASDDQE--------------------------------------------- 712

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL V+EKG GKRT + ++R++NR G G+ A  ++       +V    V+++  
Sbjct: 713 -------ILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGK-YIVGCLMVDESMD 764

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++  G +IRV +  I  +SR T GV I    K + VVS+ R  
Sbjct: 765 MMALTKAGKMIRVDMQTISKSSRNTSGVYIV---KGDEVVSISRCP 807


>gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449]
 gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449]
          Length = 824

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/907 (39%), Positives = 536/907 (59%), Gaps = 90/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D   E     V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ +   
Sbjct: 2   DSLIEDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPR 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+  A+  +L D+ KDTV+F PNYD +  EP VL  R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP H + E++D  + VID    D++ L++I++GPDFPTG +I G+ GI  AY TGRG I
Sbjct: 182 SIPPHRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIYGKAGILEAYRTGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R   HIEKT   ++ IV+ E+PYQVNKA ++E+I+EL +EK I  I+++RDESDR+G 
Sbjct: 242 RVRAKVHIEKTKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F + ++A+N  +P+ F L+ +L+ F+A R+ +
Sbjct: 301 RVVIELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + L KA+ RAH+L GL IA+ N+DEV++ IR S + + A+  L+ +        
Sbjct: 361 IIRRSIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSK-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AILE+RL RLTGL RD I  E   L  +I    
Sbjct: 413 ------------------FKLSELQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL S  +L  I+K+ELL +K++  T RRT+I E    ++ ED I  E +VVT+SH GYV
Sbjct: 455 SILKSEDKLKSIVKEELLEIKEKFSTKRRTQIEEDYDAIDVEDLIPNEKVVVTMSHRGYV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV L  Y  Q RGGKG+      D+DF+   F+ +TH +++F ++ G +Y  KV+++P 
Sbjct: 515 KRVLLKTYEKQNRGGKGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A GKA++N+++L   E+I   +   +      +  +VF TK+G V+R  L ++  I
Sbjct: 575 AGRTAIGKAVVNLINLQADEKIMATITTTDFNE---DKSLVFFTKNGVVKRTNLKEYGNI 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              G  A+ LD  DE+++         ++ + T  G C+RF +  +R    R S GV GI
Sbjct: 632 RSIGVRAINLDENDELVTAHIVDSHIKELFIATYQGMCIRFGVEELREIG-RVSRGVTGI 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                +  +  A  +  D D                                        
Sbjct: 691 KFKASEDCVIAATTIANDTDK--------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTVSE+G GK+T + ++R+ +R+GKG+    ++     G LV+V  +
Sbjct: 712 ------------LLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTPR--TGKLVSVVNI 757

Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRESEIV 903
           ND N  +++++  G +IRV    IR A R T GV I +   D++V       +  + E +
Sbjct: 758 NDENMDLMVLTSSGKMIRVDTEAIRKAGRNTSGVKIVNVG-DDKVAYANVCPKEPKEEDI 816

Query: 904 DEAESTE 910
           ++ E +E
Sbjct: 817 NDEEGSE 823


>gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 868

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/859 (44%), Positives = 541/859 (62%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK  + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 IKYLISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQDDVEDNQDI 852



 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R  GK    + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRSTGK--IAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
 gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
 gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
          Length = 828

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/912 (39%), Positives = 556/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V+ NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  L++R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDF-IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F    + SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+  A+V+  D++                               
Sbjct: 686 RTTRGVMGIRLNENDFVVG-AVVISDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V   
Sbjct: 752 GNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 847

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/844 (43%), Positives = 525/844 (62%), Gaps = 27/844 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y 
Sbjct: 8   NKILIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPH + A+YDA+ RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 68  KSARIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL KDTV++ PNYD + Q P V+  R PN+L+NG  GIAVGMATNIP 
Sbjct: 128 VRMSKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E++DGC+A ID+  I ++ LM+ I GPDFPT A+I G+ GI+ AY TGRG I IR 
Sbjct: 188 HNLFEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAAIINGKQGIEEAYRTGRGKICIRA 247

Query: 253 VSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + +E  +   RE IVV+EIPYQVNKA ++EKIA+L++EKRI  I+ LRDESD+ G R++
Sbjct: 248 RAIVEVEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRII 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I +KR A A+V+LN LY  T LQ  FS+NMVALN  +P+ F+L  IL AF+  R++++ R
Sbjct: 308 IGIKRDAVAEVVLNNLYSMTQLQVSFSINMVALNNGQPKIFSLKEILSAFICHRQDIITR 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL- 430
           RT + L KAR+R H+L  L +A AN++ ++ + R +  P  A+ +L+  +WN   I  + 
Sbjct: 368 RTIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQ 427

Query: 431 ------IDLIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 +   +      G  DG  YL+E Q +AIL+LRL  LT L    +  E   L  +
Sbjct: 428 CREVHHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLTK 487

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + L IL+   RL+ +I++EL  ++ +   PRRT I     ++  ED I +E++VVT+S
Sbjct: 488 IVDLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKENVVVTLS 547

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GYVK  PL+ Y AQ+RGGKG+S V M++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 548 YQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRGRMYWMKV 607

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP  S  +RG+ ++N+L L   ERITTI+P  + E   N   V  AT  G V++  L 
Sbjct: 608 YQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCN---VFMATASGTVKKTALI 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +   +G IA+ L   DE++ V      N+++L +  G+ VRFP + +R    R + G
Sbjct: 665 AFSRPRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRSMG-RTATG 723

Query: 724 VRGISLAKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           VRGI+LA+GD+V+S+ I      +L        +         + R   G      S +N
Sbjct: 724 VRGINLAEGDRVVSLIIPNIDGHILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERN 783

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              +     +E  Q        I+ +++ G   RT   +  I  R+ +GI     ++   
Sbjct: 784 GQVIGAIQVDEHDQ--------IMLITDAGTLVRTRVSEVSIVGRNTQGITLIRTAENEH 835

Query: 838 IGAL 841
           +  L
Sbjct: 836 VVGL 839



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 97/233 (41%), Gaps = 22/233 (9%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+                 V   +  G VK+  L  +   R    G   V + + 
Sbjct: 632 ERITTILP-------VRQYEEGCNVFMATASGTVKKTALIAFSRPRSA--GIIAVNLHEG 682

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +  + + + +  V+ FS+ G V +    ++      A G   +  ++L +G+R+ +++
Sbjct: 683 DELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRSMGRTATG---VRGINLAEGDRVVSLI 739

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCT 691
               D       +++  T+HG  +R   +++   +R+  G I++K      +++      
Sbjct: 740 IPNID------GHILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERNGQVIGAIQVD 793

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + + I+L T  G  VR  +S + +   RN+ G+  I  A+ + V+ +  +   
Sbjct: 794 EHDQIMLITDAGTLVRTRVSEVSIVG-RNTQGITLIRTAENEHVVGLQRIAEP 845



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +++  KE  ++T+S +G+ K     D+    R GKG  A  + + + I +L+     N 
Sbjct: 533 IEDMINKENVVVTLSYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVA---NT 589

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
           +D I+L S +G +  + V ++  ASR ++G   V +     +ER+ ++  +R+ E 
Sbjct: 590 HDTILLFSSRGRMYWMKVYQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEE 645


>gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum]
          Length = 854

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/902 (41%), Positives = 522/902 (57%), Gaps = 91/902 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  +  D   E   T+VSI +E++ +YL Y+++VI+GRA+PD RDGLKPV RR+LF M +
Sbjct: 2   DTPLPQDAPRE---TTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHE 58

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MGV     Y K ARI G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDG
Sbjct: 59  MGVRPGTAYRKSARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDG 118

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL + A  ++ +L ++TVD+ PNYD S +EP VL A  P +L+NG  GI
Sbjct: 119 DAPAAMRYTEIRLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGI 178

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HN+ EV++  + ++DNP+     LM  + GPDFPTG VILGR+GI++AY 
Sbjct: 179 AVGMATNIPPHNITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYR 238

Query: 243 TGRGSIVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           TGRGSIV+RGV  +E  T  DR+ +V+ EIPY VNKA ++EKIAELVREK+I  IAD+RD
Sbjct: 239 TGRGSIVMRGVVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRD 298

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G R+V+ELKR A   +I+NQL+  T LQS F  N V++   +PE  +L   L+ F
Sbjct: 299 ESDRDGMRIVVELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVF 358

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR++VV RRT + L KAR+R H+L GL  A+  +DE++ +IR S +PE AR  L+   
Sbjct: 359 LGFRKDVVTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVS-- 416

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                   T   SE+Q +AIL+LRL RLTGL R+ I  E   + 
Sbjct: 417 ------------------------TFAFSELQAQAILDLRLQRLTGLEREKIEAEYREVA 452

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I     IL+SR  LL +I+QE   + +     RRT IV    ++  E  I  E  +VT
Sbjct: 453 ALIASLEAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVT 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY+KR+P +V   QRRGGKGR GV ++++D +        H ++LFF+ LG VY+ 
Sbjct: 513 LSYEGYIKRMPDAVLPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRL 572

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     ARGK L+++LSL+  ER+  I+P    E    +  ++F T  G  ++ +
Sbjct: 573 KTYELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFE---GDNLLLFGTVKGYFKKTR 629

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS++  I + G IA  L+  D +  V     +  +L+ T+ G  +RF    IR   GR +
Sbjct: 630 LSEYANIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRP-TGRAT 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVR I L+  D V+S   V  +D                                    
Sbjct: 689 RGVRAIRLSPDDSVVSFEEVSDSD------------------------------------ 712

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L  +EKGFGKR  +  FR+  R GKG+R   V+   E GA+
Sbjct: 713 -----------------LLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTP--ETGAV 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRE 899
           VA+  V + D I +V+D G +IR+P  EIR   R  KGV + S +    E +V      +
Sbjct: 754 VAILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGAKGVKLVSLSDSPQETIVCAAINPK 813

Query: 900 SE 901
            E
Sbjct: 814 RE 815



 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 91/238 (38%), Gaps = 17/238 (7%)

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G+  + +    E+        E  I+  +  G   R P  A+     R   G  G++L +
Sbjct: 486 GRRTVIVPDEGELTPEALIPDEPYIVTLSYEGYIKRMP-DAVLPTQRRGGKGRIGVTLKE 544

Query: 732 GDQVIS-------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            D +I+         ++   D     R+   +   AQR         + SL  D  V   
Sbjct: 545 DDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSPDERVAAI 604

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +     +     +  +L  + KG+ K+T   ++    + G            E   L  V
Sbjct: 605 LPVRSFE----GDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVL-----EEGDRLARV 655

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             ++ + ++++ +  G  IR   + IR   RAT+GV     + D+ VVS E + +S++
Sbjct: 656 LVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVRAIRLSPDDSVVSFEEVSDSDL 713



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE---RCQELKLKEQFILTVSEKGF 808
              +    A   +I  +T  +     D      + +E     + L   E +I+T+S +G+
Sbjct: 459 EAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVTLSYEGY 518

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            KR          R GKG     + + +    L+A      +D ++  +D G + R+   
Sbjct: 519 IKRMPDAVLPTQRRGGKGRIGVTLKEDD---CLIATLNARAHDTLLFFTDLGKVYRLKTY 575

Query: 869 EIRIASRATKGV---VIFSTAKDERVVSVERIRESEIV 903
           E+  A R  +G     + S + DERV ++  +R  E  
Sbjct: 576 ELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFEGD 613


>gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1]
 gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1]
          Length = 812

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/892 (39%), Positives = 521/892 (58%), Gaps = 87/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDG+KPV RRI++ M+Q G+  N K+ K 
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM +YHPHG+++IYDA+ R+ Q W++R  L++ QGNFGS+DGD  AA RYTE R
Sbjct: 63  ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L DL K+TVD +PNYD +  EP VL +  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+IDNP I LD +M  ++GPDFPTG  I  + GI+ AYATG   + +RG +
Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE+    R QI+++EIPYQ+NK  +L+ I+ + +  +I DI  LRDESDR +  R+VIE
Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301

Query: 314 LKRG--ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           LKR       ++LNQLY+YT LQS ++V  +++   +P    LI  ++ F+  R +VV R
Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KA++RAHVL GL  A+ ++DEV+ +IR S     AR  LM R           
Sbjct: 362 RTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AIL++RL RL GL R+ ++ E + L   I     IL
Sbjct: 411 ---------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKTITRLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                L   IK+E+  ++D     RR+ I E   D+  ED I  EDMV+T++  GYVKR 
Sbjct: 456 GDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMTRAGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ YR Q+RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP    
Sbjct: 516 NLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGR 575

Query: 612 QARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            A+G  + N+L  L   E I +++     +   +    +FATK G ++++ ++D+  I  
Sbjct: 576 DAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGS---FIFATKSGVIKKSLITDYANITS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L   DE++ V+     +D++L TK GQ +RF  + +R   GR + GV GI L 
Sbjct: 633 AGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVR-DTGRATQGVIGIRLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+SMA+V   D                                             
Sbjct: 692 EGDEVVSMALVPGND--------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +E  +L +SE G GKRT   D+    R G G+   DV+  ++ G LV +  V  N
Sbjct: 707 -----EEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVT--DKTGKLVTLAHVAGN 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++++++++KGT+IR  V E+R+  R  +GV + +    +RV+    IR+ + 
Sbjct: 760 EELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKEDE 811



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 10/221 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  T+ G   R  ++A R           G  L + D    + +    D   
Sbjct: 496 LIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRG-SSGGKLREEDANTGVFVGSTHDYLL 554

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+ + K               I +L      + NI+         +    +  +
Sbjct: 555 FFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGSFIFAT 614

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++   D+     +G  + A ++   +E   L+ V    D D ++L +  G  +R
Sbjct: 615 KSGVIKKSLITDYANITSAG--LIAINLQPGDE---LIGVDIQQDGDDVVLATKNGQAMR 669

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
                +R   RAT+GV+     + + VVS+  +  ++   E
Sbjct: 670 FEATLVRDTGRATQGVIGIRLREGDEVVSMALVPGNDEEGE 710


>gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7]
          Length = 830

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/910 (40%), Positives = 557/910 (61%), Gaps = 93/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  NELGLTSKVAYKKSARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+ +LD ++E I GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKH-KEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIEELNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+   F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYERQNRGGKGKLSGSTYEDDFIESFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  +  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEANRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R    R
Sbjct: 627 NLSEFGSNRSCGIRAIVLDEDDELVSAKIVDKNAKHLLIASHSGTFIKFPLENVREMG-R 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRGI L + D V+S A+V+  D++                                
Sbjct: 686 STHGVRGIKLNENDFVVS-AVVISDDSNK------------------------------- 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R   R GKG+    ++K  + G
Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYREQARGGKGVIGMKLNK--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV+V  V+D +  +++++    +IRV + +IR   R   GV +  TA  ++VV V    
Sbjct: 752 NLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDTA--DKVVYVNSCP 809

Query: 899 ESEIVDEAES 908
           + E  +  E+
Sbjct: 810 KEEEPENLET 819


>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
 gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A
 gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
          Length = 827

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/911 (39%), Positives = 549/911 (60%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R
Sbjct: 627 NLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREIG-R 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV GI L + D V+   ++                                      
Sbjct: 686 TTRGVIGIKLNENDFVVGAVVISD------------------------------------ 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 710 ----------------DGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    
Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAEST 909
           + E  +  E++
Sbjct: 810 KEEEPENLETS 820


>gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 836

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/840 (42%), Positives = 508/840 (60%), Gaps = 36/840 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+    ++ K A
Sbjct: 6   VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+  YHPH ++A+YDAL RM Q +SLR  L+EGQGNFGSVDGD  AA RYTE +L
Sbjct: 66  GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  +L D+ K+TVDF+PNYDG  QEPVVL A+ PN+LVNG  GIAVGMATNIP HNL
Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV DG + +IDNP+   D L+E+I+GPDFPTG VILGR GI+ AYATG+G +VIR  +H
Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVILGREGIRAAYATGKGRVVIRARTH 245

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE+   G+R QI+VTE+PYQVNKAA+LEKIAELV+  RI  I DLRDESDR G R+VIEL
Sbjct: 246 IEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRT 373
           KR A    +LN L+++T LQ  F VNM+AL    +P   TL  +L+ ++  R+EVV RRT
Sbjct: 306 KRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR RAH+L GL IA+ +LDEV++ IR S   E+AR  L+ R             
Sbjct: 366 EHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +EVQ  AIL+++L RL  L R  I NE   L  EI    ++L+ 
Sbjct: 413 -------------FGFTEVQANAILDMQLRRLAALERHKIENEYRDLLKEIAGLEELLAD 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++L +I++EL+ ++D+    RRT I +   ++ DED I    ++V +++ GYVKR+  
Sbjct: 460 PAKILAVIREELVQLRDKFGDERRTLIQDVSGEITDEDLIPDVSVLVMITNRGYVKRIAD 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGG+G +G+ +R+ED V  +    TH S+LFF+  G V++ KVW LP     A
Sbjct: 520 GTYRQQHRGGRGVTGMTLREEDGVHRIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTA 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  +IN++ +  GE IT ++P  +  S+    Y+   T++G V+R +L  F  +  SG 
Sbjct: 580 RGIPVINLIGIEPGETITALLPVRDFASA---RYLFMCTRNGRVKRTRLDQFASVRSSGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L+  DE+  V   +  ++++L T+ GQ +RF  + +R    R + GV GI +  GD
Sbjct: 637 IAIGLEEGDELAWVRLTSGNDELILVTEQGQAIRFKETDVRPMG-RPAAGVIGIRMEPGD 695

Query: 734 QVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +VI+  +V    D        Y K  +     + G   +  +    +   G ++  R   
Sbjct: 696 RVIAAEVVQPDQDLLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERNGPVAAAR--- 752

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      I+ VS +G   R  +       R  +G+    + + +++ ++  +    D + 
Sbjct: 753 VVTDTDSIMLVSLRGMVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEM 812



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 97/258 (37%), Gaps = 18/258 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VKR  L  + + R    G   + + + D +  + 
Sbjct: 594 ETITALLPVRDFASARYLFMCTRNGRVKRTRLDQFASVRSS--GLIAIGLEEGDELAWVR 651

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + S +  ++  +  G   + K   +      A G   +  + +  G+R+        D+ 
Sbjct: 652 LTSGNDELILVTEQGQAIRFKETDVRPMGRPAAG---VIGIRMEPGDRVIAAEVVQPDQD 708

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQENDILL 698
                 ++  + +G  +R  LS+F    R G    AMK+      + +    T  + I+L
Sbjct: 709 ------LLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERNGPVAAARVVTDTDSIML 762

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  +R P        GR + GV  + L + DQV S+ ++   +   D  +  ++  
Sbjct: 763 VSLRGMVIRVPA-EQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPE---DAEMADLEEA 818

Query: 759 SAQRRLISGDTEEITSLK 776
           SA     +G   +  + +
Sbjct: 819 SADTSETAGAARDEAAGE 836


>gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
 gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
          Length = 830

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/904 (41%), Positives = 527/904 (58%), Gaps = 92/904 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + ++S +ITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RR+L+ M++ G+  N+ + K
Sbjct: 6   EKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFDK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA + GEV+  YHPHG++++YD L RMAQ W +R  LI+ QGNFGSVDGDP AA RYTEC
Sbjct: 66  CAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTEC 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ +DTVDF PNY  S  EP VL A  PN+L+NG  GIAVGM TNIP H
Sbjct: 126 RLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++D   A+IDNP I +D L  I++GPDFPTG VI GR GI +   TG+G +  RG 
Sbjct: 186 NLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIVRTRGK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H E+  G  EQIVVTEIPY VN+A ++ +IAELV +K+I  I DLRDESD     +VIE
Sbjct: 246 AHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENTR-IVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG  + V++NQL++ T+L+S F V ++AL+  +P++  +  +++ ++  R EVV RRT
Sbjct: 305 LKRGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRREVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +A DRAH+L G  IA+ NLD+ V+IIR S N E A+  LM +             
Sbjct: 365 RFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE QT AILELRL +LTGL R  I  E   L   I+E   IL S
Sbjct: 412 -------------YPLSERQTDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILES 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +LL +IK+EL  +K++  +PRRT I+    +   ED I  E  V+TVSHLG++KR P+
Sbjct: 459 EPKLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPV 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR+QRRGGKG  G    +EDFV +LF  STH  +LFF+S+G  + +KV+ +P G+  +
Sbjct: 519 AEYRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRAS 578

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-G 672
           +GK++ + L L +GE+I  ++   +      + Y+V ATK G ++++ LSD+    R  G
Sbjct: 579 KGKSVSSFLRLAEGEKIAAMLCVKDFAE---DRYLVTATKRGIIKKSALSDYANATREGG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV------FAGRNSVGVRG 726
            I + L   D ++     T EN+++L +  G  VRF               GR + GV G
Sbjct: 636 LIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVTG 695

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +    K D +  + +V H                                          
Sbjct: 696 MRFKLKSDYLDVIEVVDH------------------------------------------ 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E   L  SE G G RT   D+R+ NR G G+ A D+ +   I  L    
Sbjct: 714 -----------EAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSI-KLAGAL 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V ++D+++L++ KG  IR PV +IR  +R  KGV + +    ++++S+ RI E+E    
Sbjct: 762 SVREDDEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDKLLSIARIVETEEESG 821

Query: 906 AEST 909
           AE+T
Sbjct: 822 AEAT 825


>gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381]
 gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/893 (40%), Positives = 549/893 (61%), Gaps = 50/893 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  V + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 6   ENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSKSPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+  ++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+VDG + ++D+ +  L+ +M  I+GPDFPTG VI G+ GI +AY TGRG + IR
Sbjct: 186 PHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIFGKKGIIDAYRTGRGRVKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+   +++ I++ E+PYQ NKA ++E+IA LV++K I  I+++RDESDR+G RVV
Sbjct: 246 AKTHIEQ-KSNKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T++++ F V M+A++  +P+ FTLI +LK F+  R+ V++R
Sbjct: 305 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDNKEPKIFTLIELLKLFLNHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +           
Sbjct: 365 RTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQ----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q  AIL+++L RLTGL R+ I NEL  +  EI+    IL
Sbjct: 414 ---------------FSLSEIQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + +  IIK EL+ +K++ + PR T IV+   D+E ED I  E+M+VT++H GY+KRV
Sbjct: 459 KSETLIEQIIKDELIEIKNKFNCPRITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKG+  +   D+DF+   F    H +++F ++ G +Y  KV+++P GS 
Sbjct: 519 PSKTYEKQKRGGKGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N++ L   E+I  I+P  +     NN  + F TK+G V+R  LS++  I  +
Sbjct: 579 TAKGKAVVNLIDLQADEKIMAIIPTTDFN---NNKSLCFFTKNGIVKRTNLSEYQNIRST 635

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+KLD  DE+++     ++                 +   + +     G     L  
Sbjct: 636 GIKAIKLDDDDEVVTALIAERD-----------INENLSNEKDLKSNDEIFGDED-ELDS 683

Query: 732 GDQVI--SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            D+++    +   ++  D  + I   +     + ++S   E     +  ++++    +++
Sbjct: 684 NDEILENENSENENSQEDGTKIIVVTQKGMCIKFMLSNVREIGRVSRGVTAIKFKEKDDK 743

Query: 790 ---CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 L+  EQ IL+VS  G GKRT++ ++R++ R GKG+    ++K  + G L+ V  
Sbjct: 744 VVGAAVLQSDEQEILSVSSNGIGKRTAAGEYRLTKRGGKGVICMKLTK--KTGELIGVVI 801

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V++N+ ++ ++  G +IRV +  IR A R T GV++ +    + VVS+    +
Sbjct: 802 VDENEDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNVD-GDEVVSIACCPK 853


>gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136]
          Length = 891

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/910 (37%), Positives = 521/910 (57%), Gaps = 76/910 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  +++ +E++ S+L Y+++VI+ RA+PD+RDGLKP  RRIL+ M ++ +   KK++
Sbjct: 3   EDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKKHM 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I G+  G YHPHG A IY  L  MAQ WS+R  L+  QGNFGSV+GDPPAA RYTE
Sbjct: 63  KCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL      L+DD+ K+TVDF PNYD    EPVV  A +PN+LVNGG GIAVGMATN+P 
Sbjct: 123 ARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNLPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+VDG  A IDNP+I L  LM+ +RGPDFPTG  +LG  GI++ + TG GS+ IRG
Sbjct: 183 HNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLLGTAGIRDYFETGHGSLRIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I   +G + QI++T IPY VN+A + ++I EL  EK I ++  +RDESD     VV+
Sbjct: 243 HAEI-SETGTKPQIIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESDENTR-VVV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A   V+LN LY+ TSL++ FSV+M+A++  +P   +L   +  ++  R EV++RR
Sbjct: 301 DLRREARPQVVLNNLYKQTSLETTFSVHMLAIDNRRPRLLSLKDAISCYIEHRREVIIRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKYLL +A   A  L  L +A++ LD+ +++IR + + + A   +   ++     + L  
Sbjct: 361 TKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQSLGI 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI          G    +++Q + IL+LRL +LT L R  ++ +  +L   I + +DIL+
Sbjct: 421 LIRSQPSI--RSGRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDILA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             SR+L IIK EL +++ +  T R T+I     ++  ED I  E  +VT++H G+VKR  
Sbjct: 479 KESRVLTIIKDELGNIRAKYGTERLTKIEAAEGEINIEDLIANERNIVTITHRGFVKRTL 538

Query: 553 LSVYRAQRRGGKGRSGVVMRDE-------DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            S +R Q RGGKG  G+  R+        DFV  LF  S H  ++FF++ G VY E+V++
Sbjct: 539 ASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNTGRVYVERVYQ 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-----NLYVVFATKHGNVRRN 660
           +P  +   +G+++ N+L+L   E+I  ++    D          + +V+FATK G V++ 
Sbjct: 599 VPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEGVWRSDRFVLFATKDGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +L+DF  I + G IA+KLD  ++++ V      ++I L T  G CV+   + IR    R 
Sbjct: 659 ELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEETDIRPMG-RA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI                                                + D  
Sbjct: 718 AAGVMGIR---------------------------------------------PGETDHV 732

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V     +E  Q        +L VSE G GKRT   ++R +NR  KG+   +V++  + G 
Sbjct: 733 VSLTAVDETAQ--------LLVVSENGLGKRTPFEEYRKTNRGAKGVTTMNVTE--KTGN 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+++D+++L++  G  +R+ V +IR   R  +GV + + ++ E +  V ++   
Sbjct: 783 VVAAMAVHEDDELMLMTSSGQSVRIRVADIRQTGRNAQGVKLMNLSEGETIQDVAKV--- 839

Query: 901 EIVDEAESTE 910
            I D+ E  E
Sbjct: 840 -IPDDEEKVE 848



 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 114/273 (41%), Gaps = 15/273 (5%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                 DE     +  V+  +  G VK+  L+ ++  R+   G   V + + + +  + +
Sbjct: 630 EADSDHDEGVWRSDRFVLFATKDGTVKKTELADFKNIRK--DGIIAVKLDEGNDLIQVIL 687

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            +  + +   +S G   K +         +  G+A   ++ +  GE    +     DE++
Sbjct: 688 TNGSSEICLVTSEGMCVKCE-----ETDIRPMGRAAAGVMGIRPGETDHVVSLTAVDETA 742

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILLT 699
                ++  +++G  +R    ++ + NR   G   M +  +   +++     ++++++L 
Sbjct: 743 Q----LLVVSENGLGKRTPFEEYRKTNRGAKGVTTMNVTEKTGNVVAAMAVHEDDELMLM 798

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  GQ VR  ++ IR   GRN+ GV+ ++L++G+ +  +A V+  D +  E         
Sbjct: 799 TSSGQSVRIRVADIRQ-TGRNAQGVKLMNLSEGETIQDVAKVIPDDEEKVEGEILGAEGR 857

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           A     S  ++   S    +  +    ++  + 
Sbjct: 858 ASAVEASEASDPSASSPETTVGDAAAGDDNAEV 890


>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
 gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
          Length = 833

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 551/913 (60%), Gaps = 91/913 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++ +  +   E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP H + E++D  V V++NP+ +LD ++E ++GPDFPTG +I G+ GI  
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++
Sbjct: 241 AYKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L 
Sbjct: 300 RDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLC 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+
Sbjct: 360 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q++AILE+RL RLTGL RD I+ E  +
Sbjct: 420 R--------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQN 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MV
Sbjct: 454 LLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V++SH GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y
Sbjct: 514 VSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R
Sbjct: 574 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKR 630

Query: 660 NKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717
             LS+F    + SG  A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R   
Sbjct: 631 TNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIG 690

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R++ GV GI L + D V+   ++                                    
Sbjct: 691 -RHTRGVMGIRLNENDFVVGAVVISD---------------------------------- 715

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L+VSE G GK+T +  +R  +R GKG+    +++  +
Sbjct: 716 ------------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQ--K 755

Query: 838 IGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V  
Sbjct: 756 TGNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETRRNASGVKLINTA--DKVVYVNS 813

Query: 897 IRESEIVDEAEST 909
             + E  +  E++
Sbjct: 814 CPKEEEPENLETS 826



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 78/204 (38%), Gaps = 15/204 (7%)

Query: 511 ELDTPR-----RTRIVEGLLDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGK 564
           E    R     R  +++   ++     + +    + + S+LG   + PL   R   R  +
Sbjct: 635 EFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRHTR 694

Query: 565 GRSGVVMRDEDFVTDLFIVSTH-TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           G  G+ + + DFV    ++S     +L  S  G   +         S   +G  +I +  
Sbjct: 695 GVMGIRLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAEAYREQSRGGKG--VIGMKI 752

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
             +   +  ++   ++     NL ++  T    + R  + D  +  R+      +++ D+
Sbjct: 753 TQKTGNLVGVISVDDE-----NLDLMILTASAKMIRVSIKDIRETRRNASGVKLINTADK 807

Query: 684 ILSVETCT-QENDILLTTKLGQCV 706
           ++ V +C  +E    L T   Q +
Sbjct: 808 VVYVNSCPKEEEPENLETSSAQNL 831


>gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58]
 gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58]
          Length = 829

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/894 (38%), Positives = 519/894 (58%), Gaps = 91/894 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   HNEEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ W++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FL++DL KDTVD   NYD +  EP V  A++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + ++ NP   ++ +ME++ GPDFPTG +I G  GI + Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIICGHEGICSTYHTGRGKIKV 242

Query: 251 RGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+ E T   RE IV+TEIPY VNK+ ++E+IA+LV +K +  I+D+RDESD++G R
Sbjct: 243 RARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q+ F  NM+AL+   P    +  ++ A++  R EV+
Sbjct: 303 VVLELKKGESSEVMINRLYKFTDVQTTFGANMLALDKNLPRTMNIHRMISAWIRHRAEVL 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L G   A++ LD VV+ I+ S + E A++++++          
Sbjct: 363 RRRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AILELRL +LTGL  +  R E + L  +I     
Sbjct: 413 ----------------LYGFTDAQAVAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYV 548
           +L+    +  II+ EL  +     TPR+T I     D+ D + I+  E +++T+S   YV
Sbjct: 457 VLADEELVKDIIRTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R QRRGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP
Sbjct: 517 KRMPIKVFREQRRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +++GK+LIN L  +  GE++  I+     E   N  ++  ATK G V++  L  F 
Sbjct: 577 EGERRSKGKSLINFLEGIRPGEQVAAILNVKSFE---NADFLFLATKQGVVKKVPLDAFS 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++      E + ++L TKLG  VRFP   +R    R + GVR
Sbjct: 634 NPRKKGIRALEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPMG-RAARGVR 692

Query: 726 GISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL    D V+S  IV    +                                      
Sbjct: 693 GVSLKNQEDCVVSCQIVTDNQS-------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L V E GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 715 ---------------VLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            PV DND I+L+S +G  IR+ + ++RI  R+T+GV +      + +V++ER+ 
Sbjct: 758 VPVADNDSILLMSGQGQAIRISMQDVRIMGRSTQGVRLVHLKDGDVLVAMERLP 811



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +++   E  I+T+S   + KR     FR   R G G+   D+ K ++   L AV+  + 
Sbjct: 497 IEDIITDESVIITISGDDYVKRMPIKVFREQRRGGHGVSGFDMKKGSD--FLKAVYSAST 554

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS----TAKDERVVSVERIRESEIVD 904
            D +++ ++ G    + V  +    R +KG  + +        E+V ++  ++  E  D
Sbjct: 555 KDYLLIFTNFGQCYWIKVWRLPEGERRSKGKSLINFLEGIRPGEQVAAILNVKSFENAD 613


>gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70]
 gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s]
 gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923]
 gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150]
 gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023]
          Length = 836

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/904 (38%), Positives = 529/904 (58%), Gaps = 92/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL ++A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V    +                                       
Sbjct: 694 VSLKNEQDFVVSCQVVTEDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++   +E V+
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVE 818

Query: 905 EAES 908
             E+
Sbjct: 819 TEEN 822


>gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
          Length = 808

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/890 (39%), Positives = 518/890 (58%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +  V +  EM+NSYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+  N+ Y
Sbjct: 3   EKSKVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R  LI+G GNFGS+DGD PAA RYT
Sbjct: 63  RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  L+ D+ KD VDF PNYD S +EPVVL  + P +L+NG  GIAVGMATNIP
Sbjct: 123 EVRLSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +I+ P  +++ L+  I+GPDFPTG +I+G  GI+ +Y TG+G + +R
Sbjct: 183 PHNLGELIDALLYLIEKPTAEIEELLNFIKGPDFPTGGIIIGTKGIRESYLTGKGKLTVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+T    + I++ EIPY VNK+ +L +IAELV+EK+I  I DLRDESDR G RVV
Sbjct: 243 GKLVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A   +++NQLY++T LQ+ F V M+A+   +P+ F L  +L  F+  R++VV+R
Sbjct: 303 IELKKDADPKIVINQLYKHTQLQTTFGVIMLAILDGQPKIFNLKELLTIFLEHRKDVVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA+ RAH+L GL IA+ +LDEV+ IIR + N E A+ +LM R           
Sbjct: 363 RTKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q +AIL++RL +LT L ++ +  E+  +   I     IL
Sbjct: 412 ---------------FKLTQNQAQAILDMRLHQLTRLEKERLMEEMKQIKENISILERIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
                L  +I +EL  +K +    R+T I E    D+  ED +     V+ ++  GY+KR
Sbjct: 457 KDEKELWRVISEELKEIKKKYADERKTSIEEEEKSDITIEDILPDNPEVICITQDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS Y+ QRRGGKG + +   ++D +T   + ST +++  FS+ G VY  K + L   S
Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G A+   L++   ERIT I+   E      NLY  F T  G V++  + +F  + +
Sbjct: 577 RQSKGIAIKEYLNIENEERITEIISLSE---LPKNLYFFFITSKGIVKKTPVEEFENVRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+K+   D +++V   +  N+I++ T+ G  +RF     R    R + GV GI L 
Sbjct: 634 SGIYAIKIGEGDFLVNVFLTSGNNEIIIFTRKGNAIRFHEKDTRPMG-RVAQGVIGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI   I+                                                 
Sbjct: 693 KDDSVIGGVIL------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + I+ V++ G GKR +  +F    R G GIRA  ++  ++ G L+ V  V++N
Sbjct: 704 ----QESKQIVLVTKYGIGKRVNPQEFSTQKRGGIGIRAIKIT--SKTGDLIGVKNVSEN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++ + KG +IR+PVN I I SR ++GV +    +D+ VVS++ +   
Sbjct: 758 DEILISTKKGQIIRIPVNNIPILSRNSQGVKLVKLNEDDSVVSMDLVENE 807


>gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 868

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/859 (43%), Positives = 541/859 (62%), Gaps = 31/859 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K
Sbjct: 6   KESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  
Sbjct: 186 NMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAK 245

Query: 254 SHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI
Sbjct: 246 ADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RR
Sbjct: 306 DLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L K+++RAH+L GL +++AN+DE++++I+ SP+P  A+  ++ RSWN S +K +++
Sbjct: 366 TIFELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSMVKSMLE 425

Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +D          S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   
Sbjct: 426 GVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDR 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           +K  + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S
Sbjct: 486 VKYLISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV
Sbjct: 546 MDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +  P+ S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS
Sbjct: 606 YDFPVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +    GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R    R++ G
Sbjct: 663 EFARPRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAMG-RSAAG 721

Query: 724 VRGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V G+ L    +++S+        IVL A  +   +   +      +R   G     TS +
Sbjct: 722 VTGMRLHHNQKIVSVIVTNPDEGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSER 781

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V   + E         ++ I+ +++ G   RTSS + R   RS +G+R  ++    
Sbjct: 782 NGKVVVAVLVE--------NDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNE 833

Query: 837 EIGALVAVFP--VNDNDQI 853
           ++ +L  V    V DN  I
Sbjct: 834 KLISLKVVKQDDVEDNQDI 852



 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 110/250 (44%), Gaps = 14/250 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  M           V   + LG VK+V LS +   R   KG+  + + D D ++ + 
Sbjct: 630 ERITAMMPISQFNEGWYVFMATKLGRVKKVDLSEFARPRS--KGKIAIGLNDGDELSYVA 687

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   +  ++ FS  G   +     +      A G   +  + L+  ++I +++    DE 
Sbjct: 688 LTDGNKQIMMFSDAGKAIRFDESDVRAMGRSAAG---VTGMRLHHNQKIVSVIVTNPDEG 744

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ AT++G  +R  +S++ +  R+  G IA+       +++       + DI++
Sbjct: 745 -----IVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVENDEDIVM 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR     +R   GR++ GVR I+L   +++IS+ +V   D + ++ I   + +
Sbjct: 800 ITDNGTLVRTSSDEVRE-CGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQDIENNEDI 858

Query: 759 SAQRRLISGD 768
            +    +  +
Sbjct: 859 ESSDVTVQSE 868


>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 835

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/838 (41%), Positives = 515/838 (61%), Gaps = 35/838 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++E++   I    I  EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++++Y+A+ RMAQD+S+R +L++G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  +L DL K+TVDF PNYDG  +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG  A+I NP+I    L++ ++GPDFPT  +++G +GI+ AY TGRG+
Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R  + IE  +G++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G
Sbjct: 242 VTMRARATIE-ENGNKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R  +  V+LN LY+ T +QS F +NM+AL   +P+   +  +L  ++  + E
Sbjct: 301 MRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  L++R       
Sbjct: 361 VIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS  Q +AIL++RL RLTGL RD I  E   L  +I E 
Sbjct: 414 -------------------FALSYEQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEY 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    +L II  EL  +K+     RRT I     ++ DED I RED++++++H GY
Sbjct: 455 KAILADEQLVLNIISDELNEIKERFGDERRTEITVSDEEILDEDLIPREDVIISITHTGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ YR+Q+RGGKG  G+  ++ DFV  LF+ +TH  +LFF++ G VY+ K + +P
Sbjct: 515 IKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG  +IN++ + QGE I  ++P    ES  +  Y+ FAT+ G V++  L D++ 
Sbjct: 575 DLSRTARGTPIINLIQIEQGETINAVIPV---ESFDSESYLFFATRQGIVKKTPLDDYMN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G IA+ +   DE++ V+      +I++ T  G  +RF    +R    R++ GV+GI
Sbjct: 632 IRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSMG-RSATGVKGI 690

Query: 728 SLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L   D VI M +V    D        Y K        I     +     N +   G I 
Sbjct: 691 QLDDDDTVIDMDVVNPENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPI- 749

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                ++ L ++ ++ ++  G   RTS        R+ +G++  +    + +  +  V
Sbjct: 750 --VSLKVVLNDEDLMIMTALGTLIRTSMEGISTMGRNTQGVKLINTRDDDTVSTVTRV 805



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 104/276 (37%), Gaps = 23/276 (8%)

Query: 507 SVKDELDTPRRTRIV--------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            + D   T R T I+        E +  +   +    E  +   +  G VK+ PL  Y  
Sbjct: 572 EIPDLSRTARGTPIINLIQIEQGETINAVIPVESFDSESYLFFATRQGIVKKTPLDDYMN 631

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R+   G   + +R++D +  + +   +  ++  ++ G   +     +      A G   
Sbjct: 632 IRK--VGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSMGRSATGV-- 687

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                  +G ++       + +       V+  T  G  +R  +S++   NR GK    L
Sbjct: 688 -------KGIQLDDDDTVIDMDVVNPENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTL 740

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  D+   I+S++    + D+++ T LG  +R  +  I     RN+ GV+ I+    D V
Sbjct: 741 NVTDKNGPIVSLKVVLNDEDLMIMTALGTLIRTSMEGISTMG-RNTQGVKLINTRDDDTV 799

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++  V  ++   +      +         +   EE
Sbjct: 800 STVTRVARSEETDETFEEGEEFEGTAPDAGTEPAEE 835


>gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40]
 gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A
 gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus]
 gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 862

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/905 (40%), Positives = 539/905 (59%), Gaps = 64/905 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I SS+    + I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENIFSSN----QDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  ++GQGNFGSV
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M  I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIE    +++ IVV E+PYQVNKA +   IA+LV+EK I  I+++R
Sbjct: 237 YKTGRGRIKLRAKTHIE-KKPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK 
Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +
Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q+ AIL++RL++LTGL R+ +  EL  +
Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++   IL S + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 LELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F   +H +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++SL   E+I  I+P  + + S +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKS---LAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS+F  I   G  A+ LD  DE+++V     E                       +  +
Sbjct: 627 NLSEFKNIRSIGVKAINLDDNDELVTVVIANSEP----------------DESYDDSFED 670

Query: 721 SVGVRGISLAKGD----QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             GV  +     D     + S  ++             +  +    R+  G T       
Sbjct: 671 GEGVSNLQTISEDNSENSLESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKEN 730

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D  V   + E   QE       IL+VS+KG GKRT++ ++R+ +R GKG+    ++   
Sbjct: 731 LDEVVGAVVIENDSQE-------ILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTP-- 781

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +   LV V  V++   ++ ++  G +IRV +  IR A R T GV++ +    + VVS+ R
Sbjct: 782 KTKDLVGVVMVDEEMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVD-GDEVVSIAR 840

Query: 897 IRESE 901
             + E
Sbjct: 841 CPKEE 845



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 95/249 (38%), Gaps = 14/249 (5%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT + E           +  D    +  +      P   Y      G+G S +    ED 
Sbjct: 625 RTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDN 684

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
             +     +   +   +  G   K  + ++      +RG  +  I      + +   +  
Sbjct: 685 SENSLE--SGKMLFAVTKKGMCIKFALNKVRQIGRVSRG--VTAIRFKENLDEVVGAVVI 740

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE-ILSVETCTQE 693
             D        ++  ++ G  +R    ++   +R GK  I MKL  + + ++ V    +E
Sbjct: 741 ENDSQE-----ILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTPKTKDLVGVVMVDEE 795

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            D++  T  G+ +R  + +IR  AGRN+ GV  +++  GD+V+S+A     ++D D+ + 
Sbjct: 796 MDLMALTSSGKMIRVDMQSIR-KAGRNTSGVIVVNV-DGDEVVSIARCPKEESDDDDIVA 853

Query: 754 YMKHMSAQR 762
                    
Sbjct: 854 DDTQEQDME 862



 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 107/313 (34%), Gaps = 70/313 (22%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ D ++++   + + +   + + G   +F +S +
Sbjct: 365 IRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTN---SARDGLMAKFGLSEL 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +       + +R   L   ++    A +       ++    +K  +    +I  +  EI 
Sbjct: 422 Q---SNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIK 478

Query: 774 SLKN---DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           S       + +  +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A 
Sbjct: 479 SKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAV 538

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR------------------- 871
                +    + + F    +D ++ V+D+G L  + V +I                    
Sbjct: 539 TTYDDD---FIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQA 595

Query: 872 --------------------------IASRA---------TKGVVIFSTAKDERVVSVER 896
                                     I  R          + GV   +   ++ +V+V  
Sbjct: 596 DEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTV-V 654

Query: 897 IRESEIVDEAEST 909
           I  SE  +  + +
Sbjct: 655 IANSEPDESYDDS 667


>gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286]
 gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286]
          Length = 819

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 512/904 (56%), Gaps = 87/904 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +E     D +    +  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M 
Sbjct: 3   SEAPDPDDPQAASRVDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMH 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MGV     + K + I GE MG YHPHG++AIYD L RMAQ +S+R  L++GQGNFGS+D
Sbjct: 63  EMGVSSRSAHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGSMD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDP AA RYTE R+   +  LL D+ KDTVDF+ NYD   +EP VL +  PN+LVNG  G
Sbjct: 123 GDPAAAMRYTEARMSPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGSSG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGM+TNIP HNLGEV+D  V +IDNPD +++ LM+ ++GPDFPTG  I+G+  I +AY
Sbjct: 183 IAVGMSTNIPPHNLGEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIVGKDAIYSAY 242

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           ATGRG + +R    +     +  +IVVTEIPYQ NKA M+E+IAE V E  I  IADLRD
Sbjct: 243 ATGRGRLRVRADYEV---DPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADLRD 299

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G R+V+ELKRGA+ DV+ NQL   + L+S F V  +AL   +P   TL   L+ +
Sbjct: 300 ESDRNGVRIVVELKRGANVDVVENQLLE-SHLESTFGVINLALVDDEPRVLTLKETLEHY 358

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           VA R+EVV RR+++ L++A+DRAH+L G   A+ N+D+VV +I+ S + + AR EL  + 
Sbjct: 359 VAHRKEVVRRRSQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRSQ- 417

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                       SE Q   I+ ++L  LT +   +I +E   + 
Sbjct: 418 -------------------------FDFSEEQAAHIVRMQLGSLTSMETAEIESEYEDVQ 452

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+    IL S   LL +IK EL  +K E D  R+T I+E   ++  ED I  ED VV 
Sbjct: 453 ARIERLQTILDSEDELLTVIKDELREIKAEYDDDRKTSILEAEGEVTHEDLIPEEDCVVV 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++   Y+KR+P+  + AQ RGGKG  G   +D D V+ +F  ++H  +L F++ G VY+ 
Sbjct: 513 ITEDDYIKRMPVDAFDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVYRL 572

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S  ARGK+ +NI+ L   E IT ++   + E    +  +   T++G V+R  
Sbjct: 573 KTYEIPEMSRTARGKSAVNIIDLGDDEEITAVVSTDDFEE---DECLTMVTRNGYVKRTC 629

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + +F  I  +G IA KL+  D ++ VE      D+++ T+ G  +RF  S +R    R++
Sbjct: 630 VDEFENILSTGIIAAKLEDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREMG-RSA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L  GD+V +M      D                                    
Sbjct: 689 RGVRGIDLQDGDKVAAMVATDDHD------------------------------------ 712

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +LTV+E G+GKRT   ++   +R GKG+   D+   +  G +
Sbjct: 713 ---------------DRALLTVTENGYGKRTLLAEYSKQSRYGKGL--IDIKTDDRNGRV 755

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                V ++D ++++S+ G ++R+P  ++    R TKGV I +    + V SV  +    
Sbjct: 756 ATAKAVREDDHLVIMSESGQIMRIPAGDVSQVGRNTKGVKIMALDGVDNVASVTVVPAEV 815

Query: 902 IVDE 905
             DE
Sbjct: 816 ENDE 819


>gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27]
 gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27]
          Length = 833

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 552/913 (60%), Gaps = 91/913 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++ +  +   E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP H + E++D    V++NP+  LD ++E ++GPDFPTG +I G+ GI  
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIVE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++
Sbjct: 241 AYKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+
Sbjct: 300 RDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLR 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+
Sbjct: 360 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q++AILE+RL RLTGL RD I+ E  +
Sbjct: 420 R--------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQN 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +   IL S  RL G++K ELL VK++  +PR T I E   +++ ED I  E MV
Sbjct: 454 LLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRHTEIQESYENIDIEDLIANEPMV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y
Sbjct: 514 VSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R
Sbjct: 574 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKR 630

Query: 660 NKLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717
             LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   
Sbjct: 631 TNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNVKHLLIASHLGIFIKFPLEDVREIG 690

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV+GI LA+ D V+   ++                                    
Sbjct: 691 -RTTRGVKGIRLAENDFVVGAVVISD---------------------------------- 715

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L+VSE G GK+T +  +R  +R GKGI    +++  +
Sbjct: 716 ------------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQ--K 755

Query: 838 IGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V  
Sbjct: 756 TGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNS 813

Query: 897 IRESEIVDEAEST 909
             + E  +  E++
Sbjct: 814 CPKEEEPENLETS 826


>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
 gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
          Length = 986

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/834 (41%), Positives = 520/834 (62%), Gaps = 36/834 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +++EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +  ++ + K A
Sbjct: 132 LKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSA 191

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG+++IY+A+ RMAQD+S+RL LI+G GNFGS+DGDP AA RYTE RL
Sbjct: 192 WTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRL 251

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG  GIAVGMATN+P HNL
Sbjct: 252 THAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNL 311

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV      +IDNP+  L+ LM  + GPDFPTG +I+G  GIK+AY TGRG++ IR   H
Sbjct: 312 QEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVH 371

Query: 256 IEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE T    R+++V+TEIPYQVNK+ + E+IA+ V EK+I  I+D+RDES+R+G R+VI+L
Sbjct: 372 IENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVIDL 431

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+GA   V+LN LY+ T LQ+ FSV  +AL    P   +L  +++ ++  +++VV RRTK
Sbjct: 432 KQGAVPQVVLNNLYKRTQLQTSFSVIDIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTK 491

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +A+ R H+L GL IAV N+DEVV IIR S +   A+  + +R              
Sbjct: 492 FDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSER-------------- 537

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         + ++Q  AIL++RL RLTGL RD++  +++ L  +I    D+L + 
Sbjct: 538 ------------FGIDDIQGEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNP 585

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L +IK+EL+ + +   +PRRT+I       ++ ED I  EDMV+TV+H  Y+KR+P+
Sbjct: 586 EKMLEVIKEELMQIAERYASPRRTKISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPV 645

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YRAQ+RGGKG  G+ ++D DFV DLF+ STH  VLFF++ G VY+ KV  LP+GS  +
Sbjct: 646 ATYRAQKRGGKGVQGLSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTS 705

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG AL+N+L L + E  T ++   +     +N Y+VFATK G V++  ++++ +  R G 
Sbjct: 706 RGSALVNVLPLAEDEHPTAVITTRD---FPDNQYLVFATKQGMVKKTAIAEYDKSRRDGL 762

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+++V    + N I+L T  G+ + F    +R    RN+ GV+GISL    
Sbjct: 763 IAINLKDGDELVNVRRVCEGNRIILCTSAGKAIMFSEEDVRP-TSRNTSGVKGISLKNNA 821

Query: 734 QVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            ++ M I     D        Y K        +     +  +    +S +G +   R   
Sbjct: 822 YMLGMEISNGKGDLLVITENGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGALVACR--- 878

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +   +  ++ +SE+G   R  S D   S R+ +G++  ++S  + + A+  +  
Sbjct: 879 VVGPQHELMIMSEEGVMIRVKSMDISSSGRATQGVKIMNLSSTDHVSAMARMVA 932



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 151/480 (31%), Gaps = 93/480 (19%)

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           ++ +  L       G I      +KD   T R T  +   + +E+     R+ +V+T   
Sbjct: 330 EDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVHIENTGRAGRQRLVITEIP 389

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
               K +       Q    K      MRDE         S    +     L      +V 
Sbjct: 390 YQVNKSLLQERIAQQVNEKKIEGISDMRDE---------SNRKGMRIVIDLKQGAVPQVV 440

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
              +        +   I        I  +   P   S  + +      +   V R    D
Sbjct: 441 LNNLYKRTQLQTSFSVI-------DIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTKFD 493

Query: 665 FIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             +  +   I     + +D+ DE++ +   ++++      K     RF I  I+      
Sbjct: 494 LARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDD---AEAKSRMSERFGIDDIQ------ 544

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN--D 778
              +  + L +   +    +    D  Y +       +    +++    EE+  +     
Sbjct: 545 GEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYA 604

Query: 779 SSVEGNISEERCQ-----ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S     IS    Q     +L  +E  ++TV+   + KR     +R   R GKG++   + 
Sbjct: 605 SPRRTKISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQGLSLK 664

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI---ASR--------------- 875
             + +  L   F  + +D ++  ++KG + R+ V+E+ +    SR               
Sbjct: 665 DNDFVEDL---FVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDEH 721

Query: 876 ------------------ATK------------------GVVIFSTAKDERVVSVERIRE 899
                             ATK                  G++  +    + +V+V R+ E
Sbjct: 722 PTAVITTRDFPDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVCE 781


>gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
 gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
          Length = 812

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/884 (40%), Positives = 543/884 (61%), Gaps = 86/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNFIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R EV+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFEVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++L+ 
Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NSKIYEIMKKELLELKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLIGNIINLSEGEKVRDTIVIKEFVPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K+   D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ + + D                                            
Sbjct: 692 GDAVVSAMLIKNPETD-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 708 --------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++ ++  G +IR  ++EI    RAT+GV I   A +E+V ++ 
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801


>gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
 gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
          Length = 860

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/904 (39%), Positives = 545/904 (60%), Gaps = 89/904 (9%)

Query: 3   EHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           +  +  DE   +   IT   +T E++  +L Y+++VI+ RA+PD+RDGLKPV RRIL+ M
Sbjct: 4   DDFMEFDESNFDPGHITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRILYSM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M +  +K Y K ARI G+ MGKYHPHG+++IY AL  +AQ W++R +L++G GNFGS+
Sbjct: 64  HEMNIGPDKAYRKSARIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNFGSM 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L DL KDTVD   NYDG  +EP VL +RYPN++VNG  
Sbjct: 124 DGDDPAAMRYTEARMSKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNLGE +DG  AV+DNP+I    LM  ++GPDFPTGA ILGR+GI+ A
Sbjct: 184 GIAVGMATNVAPHNLGETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYILGRSGIRQA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS+++R  + IE+    + +IVV E+PY VNKA+++E+IA LVR+K I  I DLR
Sbjct: 244 FETGRGSVIMRAKTKIEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGITDLR 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+  G RVVIEL++    DV+LNQLYR T LQS F VN V L    P + ++I +LK 
Sbjct: 304 DESNMDGIRVVIELRKDIQPDVMLNQLYRSTPLQSNFGVNNVVLFNGVPRQASMIDLLKG 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++AF++EV+VRRT++ L KA+DRAH+L GL IAV NLD ++  IR S +P  A   LM+ 
Sbjct: 364 YIAFQDEVIVRRTQFDLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLME- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q +AIL+++  RLTGL R+ I NE   L
Sbjct: 423 -------------------------GFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDL 457

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            I+I +  DILS+ +R+L II+ EL  VK + + PRR+ I++ + D+EDED I  E++++
Sbjct: 458 LIKIADFQDILSNHARVLQIIRDELSEVKAKFNDPRRSEIIDAIADVEDEDLIPVENIII 517

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY+KR+    Y  Q RGGKG  G+ +  +D +     +STH  +L F+  G VY+
Sbjct: 518 TLSSNGYIKRLTTDTYHVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYR 577

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ++G   IN++S+ + E I  ++P+ +D    ++ ++ F TK G ++R 
Sbjct: 578 IKGYNVPEFSRTSKGIPAINLISMEKTENIRALVPYSQD---HDSKFLFFVTKQGIIKRT 634

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              ++  IN++GKIA+KL+  DE+  V +     +I++    G+ VRF  + +R    R 
Sbjct: 635 TFDEYENINKNGKIAIKLNEDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPLG-RT 693

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G ++  G  VI +A  L  +                                   
Sbjct: 694 ARGVKGFNVDGG-YVIGLATNLEGE----------------------------------- 717

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             +ILT++E GFGK++S  D+R++ R  +G++  +V++  + G 
Sbjct: 718 ------------------YILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQ--KSGK 757

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV +  V  ++  ++++  G +IR+ + ++ + SR+ +GV + +  KD+ V SV  +   
Sbjct: 758 LVCMRAVRGDEDCMIMTAGGIVIRISLKQVSVYSRSAQGVKVINV-KDDIVSSVAILEPE 816

Query: 901 EIVD 904
           E  +
Sbjct: 817 EDSE 820


>gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
 gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 830

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/908 (38%), Positives = 530/908 (58%), Gaps = 95/908 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRILF M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A  L++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+  PD  ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKLR 243

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              HIE+     RE I++TE+PY VNK+ ++E+IA+LV +K +  I D+RDESD+ G RV
Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S+++++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R EV+ 
Sbjct: 304 VLELKKGESSEIVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LD++VR IR S + E A+ +L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIEN---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 414 ----------------FGFTEQQSVAILELRLYQLTGLESEKIQKEYDELINKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQDLQKLHKTPRRTTIEFDADDVRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKQGVVKKVSLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE++ +V   ++E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV    +                                       
Sbjct: 694 VSLKNEKDRVVACQIVKDDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESE 901
            V D+D I+L+S +G  IR+ + ++R+  R+T+GV +      + +V++E++     E+ 
Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKDGDTLVAMEKLSLNGEETL 818

Query: 902 IVDEAEST 909
              E EST
Sbjct: 819 SGIEEEST 826


>gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8]
 gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8]
          Length = 826

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/912 (40%), Positives = 557/912 (61%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  + V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDF-IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F    + SG  A+ LD  DE++  +        +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDKGDELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L + D V+  A+V+  D++                               
Sbjct: 686 RTTRGVRGIKLNENDFVVG-AVVISDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V   
Sbjct: 752 GNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLENS 821


>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
 gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
          Length = 852

 Score =  707 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/897 (40%), Positives = 533/897 (59%), Gaps = 111/897 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++     + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 7   KDSDTQIIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAY 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  AA RYT
Sbjct: 67  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 127 EARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+VDG + ++DN +  L+ LM+ I+GPDFPT  +I G+ GI +AY TGRG I IR
Sbjct: 187 PHSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  IA++RDESDR+G RVV
Sbjct: 247 AKTHIE-KRANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++R
Sbjct: 306 IELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +           
Sbjct: 366 RTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL
Sbjct: 415 ---------------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + L  +I++EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRV
Sbjct: 460 KSEALLEDLIREELKEIRAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRV 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS 
Sbjct: 520 PSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSR 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  +   S +   + F TK+G V+R  LS++  I   
Sbjct: 580 TAKGKAVVNLINLQAEEKIMAIIPTSDFAESKS---LCFFTKNGIVKRTNLSEYQNIRSV 636

Query: 672 GKIAMKLDSRDEILSVETCT---------------------------QENDILLTTKLGQ 704
           G  A+ LD  DE+++                                    +   TK G 
Sbjct: 637 GVRAINLDENDELVTAIIVERDLIELSQASQDENLSEEASEENLENVGGKMLFAVTKRGM 696

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           C++FP++ +R    R S GV  I   + +  +  A+V+  D                   
Sbjct: 697 CIKFPLAKVREIG-RVSRGVTAIKFKEKNDELVGAVVIEND------------------- 736

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                           EQ +L+VS KG GKRT++ ++R+ +R G
Sbjct: 737 --------------------------------EQEVLSVSAKGIGKRTNAGEYRLQSRGG 764

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           KG+    ++  ++   L++V  V+++  ++ ++  G +IRV ++ IR A R T GV+
Sbjct: 765 KGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGVI 819


>gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1]
 gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC]
          Length = 830

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/898 (38%), Positives = 531/898 (59%), Gaps = 91/898 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+  PD+ ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKVR 243

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+     RE I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A+V  R EV+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWVRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LD+VV  IR S + E A+ +L+++          
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEK---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 414 ----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFSN 634

Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE++ +V   +++  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV    +                                       
Sbjct: 694 VSLKNEKDRVVACQIVRDDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +V++E++  +E  
Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDE 816


>gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
 gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
          Length = 919

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/905 (37%), Positives = 519/905 (57%), Gaps = 27/905 (2%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I  + I DEM++SYLTYA++VI+ RA+PD RDGLKP  RRIL  M  + +  +   V
Sbjct: 12  DKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGASSSRV 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+ISG+  G YHPHG+ +IY  L R+ QDW +R +LI+ QGNFGS+ G PPAA RYTE
Sbjct: 72  KCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGSLAGLPPAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  +LDD+ ++TVDF P YD    EPVVL +++PN+LVNG  GIAVGMAT+IP 
Sbjct: 132 ARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGSSGIAVGMATSIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            NLGEV +    +IDNPD  +D +++++ GPDFPTG +I GR GI+  YATGR +I +R 
Sbjct: 192 QNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIICGRYGIRKGYATGRSTITLRA 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ----GY 308
            +H E      + IVVTEIPY   +  + EK+  LVR+ R+  I+ + D +DR       
Sbjct: 252 RTHFETEKQS-DVIVVTEIPYMETRDRIREKLETLVRDDRVKGISRIVDLTDRNVPPWKV 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + I LKR A  +V+L QL++++ LQ+ FS+ ++AL G +PE  ++  +++ F+  R +V
Sbjct: 311 HLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALVGNRPETLSIKELIQQFILHRIDV 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++LL +AR R H + GL IA  ++DEV++ IR SP+   A+  L     +   I+
Sbjct: 371 IRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEAKISLQGLQVDGKLIE 430

Query: 429 DLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
             +  D   +     G      LS  Q  AI+ ++L  L  L R+ +  E   L   I E
Sbjct: 431 RALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLEREKLSGEHQELLKAISE 490

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
            L +LS    +  +I++++L ++ +    RRT I  + L D+  +D I  E MVVT+S  
Sbjct: 491 YLYLLSDEDHIRSVIREDMLLLQQKYSDKRRTDISEDELTDVNRDDLITEEPMVVTLSQR 550

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L+ Y+AQ RGGKG  G    +ED +  LF+ STH+ +LF ++ G VY +KV+ 
Sbjct: 551 GYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVSSTHSYLLFITNRGRVYWQKVYD 610

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+    A+G+AL+N+LSL + E ++  +   E +      ++V AT++G ++++ LS +
Sbjct: 611 LPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFDEE---RFLVMATRNGIIKKSPLSAY 667

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +  + G IA+KLD  DE++     +   D+LL T  G  +RF  S  R    RN+ GV+
Sbjct: 668 SRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAIRFAQSDARSMG-RNTRGVK 726

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L+K   VI M I     AD +  +  +      +R   G        + +       
Sbjct: 727 GIKLSKSGHVIGMVI-----ADPETCLLTVCENGYGKRTPFGFIPPAEEQEEEVLEAEEE 781

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +       +  G         +R   R GKGIR    S  N  G  V + 
Sbjct: 782 ITAEPDSDSEENTDEEQETRSGM-------HYRRQRRGGKGIRDIRTSARN--GNAVDII 832

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           PV ++D++++V+  G + RV   EI    R T+GV + +   ++++VS+ RI  +EIVDE
Sbjct: 833 PVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVITLDTNDKLVSLARIP-AEIVDE 891

Query: 906 AESTE 910
           +E+ +
Sbjct: 892 SENED 896


>gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 862

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 836

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/904 (38%), Positives = 528/904 (58%), Gaps = 92/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERKAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V    +                                       
Sbjct: 694 VSLKNEQDFVVSCQVVTEDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++   +E V+
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVE 818

Query: 905 EAES 908
             E+
Sbjct: 819 TEEN 822


>gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276]
 gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s]
 gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A
 gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768]
 gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222]
 gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301]
 gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 836

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/904 (38%), Positives = 528/904 (58%), Gaps = 92/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V    +                                       
Sbjct: 694 VSLKNEQDFVVSCQVVTEDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++   +E V+
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVE 818

Query: 905 EAES 908
             E+
Sbjct: 819 TEEN 822


>gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
          Length = 817

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/896 (37%), Positives = 511/896 (57%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E   +  VSI  EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M + G+ ++ 
Sbjct: 6   TPEGGTLIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  KCA + G+V+G+YHPHG+A++YDA+ R+ Q +S+R + I+ QGNFG +DG P AA R
Sbjct: 66  KTRKCATVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A  ++ D+ K+TVDF PN+D + QEP VL A++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMSTVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+     A IDNPD+ L+ L  I++GPDFPTG +I GR GIK AY TGRG I+
Sbjct: 186 MPPHNLREICSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIFGRRGIKQAYKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IRG  +IE     RE I+ TEIPYQV    + ++I EL R+K I  I  + D S     R
Sbjct: 246 IRGRFNIEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRGA A V+LNQL+  T+LQS F V  +AL   +PE  TL  +++ FV  R+EVV
Sbjct: 306 IVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALVKGRPEILTLKDLIRYFVEHRQEVV 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L  L +A+ N+DEV+RIIR S + +TA+  LM+R         
Sbjct: 366 TRRTRYDLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMER--------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                                +VQ +AI++++L RLT L  +D+R EL  L   I    D
Sbjct: 417 -----------------FEFDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKD 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L +IK+E  S++++    RRT IV + +  +  ED I  E+MV+ +S+LGY+
Sbjct: 460 LLAHPEKILALIKEETESLREKYGDDRRTDIVADEVEQINIEDLIKEEEMVILISNLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL+ Y+AQ RGGKG +   + ++DF+  +FI STH  ++F ++ G  Y  KV  +P 
Sbjct: 520 KRIPLTAYKAQGRGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               +RG  +  +L+++  E ITT++   E     +  Y+  AT  G V++ + S F   
Sbjct: 580 AGRNSRGAHIKGLLTVSPNEEITTVVSLKE---FSDEQYLFMATAAGVVKKVQTSQFSNA 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA++LD  D++++       ++++L ++ GQ +R   +++R    R   GV G+ 
Sbjct: 637 KTRGIIAIRLDEGDKLVTAILSGGTDELILISRRGQALRITETSVRPMG-RAGRGVGGLK 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+GD++     V                                               
Sbjct: 696 LAQGDELAGALRV----------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  ++ ++EKGFGKR    +F    R   G R   VS  ++ G +V      
Sbjct: 709 ------ESDACMMLLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVS--DKTGEIVGTINAA 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D+D+I+ ++ +G  +RV  N +    R+  GV +F+    + V+ ++R+   +  D
Sbjct: 761 DSDEIVCITSQGKSLRVAANSVTKQGRSASGVRVFNIDPPDMVIGLDRVANEDKED 816


>gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
 gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
          Length = 850

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/898 (38%), Positives = 524/898 (58%), Gaps = 82/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V I  EM+ SY+ Y+++VI+ RA+PD+RDG KPV RRIL+ MM +G   +K Y
Sbjct: 3   DQDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           +K AR  GEV+GKYHPHG+++IY AL RMAQDW+LR  L++GQGNFGS+DGD PAA RYT
Sbjct: 63  MKSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      ++ DL K+TVD + N+D   +EP VL  R PN LVNG  GIAVGMATN+P
Sbjct: 123 ESRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DGCVA IDNP+ID++ LME I+ PDFPTGA I+G  G+++AY TG G I++R
Sbjct: 183 THNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIMGLQGVRSAYETGHGRIILR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      + IVV EIPY VNKA +++ IA LV EKRI  I+D+ DESDR+G R+V
Sbjct: 243 AKTEIE-NGPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR A+A+V+LN+L++ T+LQS F+VN V L   +P+  +L   ++ FV  R EVV+R
Sbjct: 302 IEVKRDANANVLLNKLFKMTALQSSFAVNCVGLVHGRPKVLSLKDCIRTFVDHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA++RAH+L GL IA  N+DEVVR+IR S  P  A   L +R           
Sbjct: 362 RTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q +AI+++RLA+LT + +D +  E   L  +I     IL
Sbjct: 411 ---------------FELDDIQAKAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K EL  VK++    RRT I     +   ED    +++++T+SHLGY+KR 
Sbjct: 456 TDDELCRQVMKDELNEVKEKYGDVRRTEIKLSAEEFNPEDFYADDEVIITISHLGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DF+  ++  + H ++LFF++ G  Y  KV+ LP G+ 
Sbjct: 516 PLAEFRAQGRGGVGSRGGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L++   + +   +      D     + YVVF T  G +++  L ++ +  
Sbjct: 576 NAKGRAIQNMLNIEADDSVNAFLYIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D ++SV     ++++++  + G+ +RF   A+R    R S GVRGI L
Sbjct: 636 TNGVKAITIREEDRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTMG-RVSTGVRGIRL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +  +  ++ +V   D + +  +        +R                           
Sbjct: 695 DEDGEDQAVGMVCINDPEKETIMVVSDQGFGKR--------------------------- 727

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                                 ++  D+R +NR GKG++   ++  ++ G + A+  V D
Sbjct: 728 ----------------------SAIEDYRKTNRGGKGVKTLQLT--DKTGKVAAIKSVTD 763

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
           ++ +++++  G  +R+ V ++R+  RAT+GV + +  K ++ + SV  +   +   EA
Sbjct: 764 DNDLMIINRSGITLRLKVADVRVMGRATQGVKLINLTKRNDSISSVCVVTTEDEDAEA 821



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 106/247 (42%), Gaps = 12/247 (4%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             VV  +  G +K+  L  Y   R    G   + +R+ED V  + + +    ++  +  G
Sbjct: 612 HYVVFCTAEGIIKKTCLEEYSRPR--TNGVKAITIREEDRVVSVVLTNGQDELVIANRNG 669

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +     +      + G   I  L  +  ++   ++   + E       ++  +  G 
Sbjct: 670 RAIRFNEDAVRTMGRVSTGVRGI-RLDEDGEDQAVGMVCINDPEKE----TIMVVSDQGF 724

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R+ + D+ + NR GK    L   D+   + ++++ T +ND+++  + G  +R  ++ +
Sbjct: 725 GKRSAIEDYRKTNRGGKGVKTLQLTDKTGKVAAIKSVTDDNDLMIINRSGITLRLKVADV 784

Query: 714 RVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           RV   R + GV+ I+L K  D + S+ +V   D D +      + + A     + +T   
Sbjct: 785 RVMG-RATQGVKLINLTKRNDSISSVCVVTTEDEDAEALDATTEAVDAPITSDAPETTIE 843

Query: 773 TSLKNDS 779
           TS + D+
Sbjct: 844 TSEQIDN 850


>gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
          Length = 863

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  +   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFVSGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221]
 gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221]
 gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3]
          Length = 862

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511]
 gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511]
          Length = 838

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/898 (39%), Positives = 504/898 (56%), Gaps = 84/898 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +    + + + + +V I DEM+ SY+ YA++VI GRA+P + DGLKPVHRRIL+ M
Sbjct: 1   MSSDVPDPTDVQARAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + I GE MG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 61  HEMGVSSGSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSM 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA+RYTE R+   +  LL D+ KDTVDF  NYD   QEP VL A +PN+LVNG  
Sbjct: 121 DGDPAAAQRYTEARMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGEV+D  + +ID+PD  ++ LM+ ++GPDFPTGA I+GR  I +A
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIVGRDAIYSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R    +E+    RE+IVVTE+P+Q NKA ++E+IAE V E  I  I+DLR
Sbjct: 241 YKTGRGRIRVRAEFEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKRGA+ +V+ N+L     L+  F V  +AL   +P   +L   L+ 
Sbjct: 301 DESDRDGVRIVIELKRGANTEVVKNRLLE-NHLERTFGVINLALVDGQPRVLSLKETLEE 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +VA R EVV RR++Y L +A DRAH+L G   AV N D+VV +IR S     A+  L   
Sbjct: 360 YVAHRREVVRRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENLQD- 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q   I+ ++L  LT +   +I  E   +
Sbjct: 419 -------------------------AYDFSQDQADHIVRMQLGSLTSMETTEIEEEYEEV 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+    IL S   LL +IK EL  +K+E    RRT I+E    +  ED I  E++ V
Sbjct: 454 QAEIERLNAILESEEELLSVIKDELRGIKEEYGDERRTSIIEDQGTVTHEDLIPEEEVFV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   YVKR+P+  +  Q RGGKG  G  +++ D V+ +F  +TH  +L F++ G VY+
Sbjct: 514 VMTEDDYVKRMPIDQFDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQ 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P     ARGK+ +NIL L+ GE IT I+   + ++  +  +V  AT HG V+R 
Sbjct: 574 LKTYEIPEMGRTARGKSAVNILDLDPGEDITAIV---DTDAFGDGEFVTMATHHGYVKRT 630

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              +F  I  +G IA  L+  DE++ VE      D+++ T+ G  +RF    +R    RN
Sbjct: 631 GGEEFDNIRSTGIIAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAMG-RN 689

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D V  +     AD                                   
Sbjct: 690 ARGVNGIKLQDDDAVAGLVATDEADGQA-------------------------------- 717

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+  G+GKRT   ++R  +R GKG+   D+   +  G 
Sbjct: 718 -------------------LLTVTRNGYGKRTRLSEYRTQSRYGKGL--IDIKTGDRNGP 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + AV  V+D+DQ++++S+ G ++R  V+EI    R T GV++      + V SV+ I 
Sbjct: 757 VTAVKAVDDDDQLVMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASVDDIP 814


>gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6]
          Length = 859

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/910 (39%), Positives = 537/910 (59%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKMIIR-DVKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+++ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA I++PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +AELV++KRI  I  L 
Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +++ 
Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL+ 
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELSG 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++  DIL++ +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQ+RGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  +IN+L L +GE++T ++ +P+DE +    +V   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGSNIINLLQLAEGEKVTNMLCYPKDEDNKGG-FVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I ++G I + L+  D +      T  + +++ T+ GQ +RF  +  R    R
Sbjct: 633 TPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLIVATRNGQAIRFNEADARPMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  GVR I LA+                                              D 
Sbjct: 692 SGHGVRAIKLAE---------------------------------------------GDE 706

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   I  E           +LTV+E G G+R+    +RI+ R GKGIR  D SK     
Sbjct: 707 VVGVCICRE--------GGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDASKD---- 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + AV  V+D D ++L S +G +IR+  NEI + SR   GV +    ++++V+ + R   
Sbjct: 755 KVAAVKIVDDIDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLAR--- 811

Query: 900 SEIVDEAEST 909
           ++  DEA++ 
Sbjct: 812 TDHDDEAQTE 821


>gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826]
 gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826]
          Length = 873

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/954 (39%), Positives = 555/954 (58%), Gaps = 135/954 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++    E  + I SV I D ++NSYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MKDNLL----ELTQDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y+K ARI GEV+GKYHPHG+ A+YDAL RMAQ +S+R  +++GQGNFGS+
Sbjct: 57  DNLGVGSRSAYMKSARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+      LL D+ KDTVDF PNYD    EP VL +R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEARMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E++DG + +++N +  L+ +ME I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV++K+I  I+++R
Sbjct: 237 YRTGRGRVKLRAKTHIE-KKPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK 
Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +IR S +   AR  LM +
Sbjct: 356 FLNHRKTVIIRRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q  AIL++RL++LTGL R+ +  EL  L
Sbjct: 416 --------------------------FNLSELQANAILDMRLSKLTGLEREKLEAELAEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK+ELL +K++   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 MAEIARLDEILKSETLLENLIKEELLEIKNKFKVPRVTEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  + + S +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFDESKS---LAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT----------------------------- 691
            LS+F  I   G  A+ LD  DE+++                                  
Sbjct: 627 NLSEFKNIRSVGVRAISLDENDELVTALIAQTYDDMPVTDPENELSVESEVLEIEEIQNE 686

Query: 692 ---------------QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQV 735
                           E  + + TK G C++F IS +R    R + GV GI   + GD+V
Sbjct: 687 IDEDSANAEEDTNSGDETMLFVVTKKGMCLKFKISKVRQMG-RTARGVTGIKFKEPGDEV 745

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +  A++   D +                                                
Sbjct: 746 VGAAVIESNDQE------------------------------------------------ 757

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               IL++S+KG GKRT++ ++R++NR GKG+    ++  +  G LV V  V++   ++ 
Sbjct: 758 ----ILSISQKGIGKRTTADEYRLTNRGGKGVICMKLT--SRTGDLVGVVMVDEEQDLMA 811

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++  G +IRV +  IR A R T GV++ +   D+  VS+ R  +++  ++ +  
Sbjct: 812 LTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDDV-VSIARCPKADDGEDEDEA 864


>gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 862

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 547/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|315452542|ref|YP_004072812.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
 gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
          Length = 806

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 534/892 (59%), Gaps = 88/892 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y 
Sbjct: 2   QPKIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 62  KSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+   +  LL DL KDT+DF  NYD + +EP +L +R PN+L+NG  GIAVGMAT+IP 
Sbjct: 122 ARMAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H   E++D  + V++NP  +L  L+EI++GPDFPTG V+ G+ GI  AY TGRG I +R 
Sbjct: 182 HRPDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGGVVYGKAGILEAYTTGRGRIKVRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S +E    +RE I++ EIPYQVNKA ++E+I+ L ++K +  IA++RDESDR+G RVVI
Sbjct: 242 KSRVE-KHNNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRVVI 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A ++++LN LY+ ++++  FS+ ++A+   +P  F L+ +LK F+  R+ VV+RR
Sbjct: 301 ELKKDAYSEIVLNHLYKSSNMEITFSIILLAIYNKEPRVFNLLELLKLFLVHRKSVVIRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL +A+ + + V+ +I+ S + + A+  LMQ             
Sbjct: 361 TIHELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQ------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T +LSE Q++AIL++RL RLTGL ++ I+ E   L  +I    +IL 
Sbjct: 408 -------------THHLSEEQSKAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQ 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +  +L  +IK+ELL VK++  TPR+T+I E    +  ED I  EDMVVT+SH GYVKRVP
Sbjct: 455 NADKLNALIKEELLEVKEKFSTPRKTQIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVP 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L VY  QRRGGKG++     ++DF+   FI +TH ++LF ++ G ++  KV+++P     
Sbjct: 515 LKVYEQQRRGGKGKNSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRN 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A G+AL+N++ L  GE I   +P  + ++   +  +VF TK+G V+R +LS F +I R G
Sbjct: 575 AIGRALVNLIDLQPGESIKATIPTKDFDA---DKSLVFFTKNGIVKRTELSAFGRI-RGG 630

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ L+  D +++ +       ++ + +  G C+RF + ++R    R + GVRG+ L +
Sbjct: 631 VRAIVLEEDDALVTAKIIDSSVQELFMASSKGMCIRFSVESVREMG-RVARGVRGMRLRE 689

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD VI    V                                                  
Sbjct: 690 GDFVIGAGGVSSD----------------------------------------------- 702

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                EQ +L+VS KG GK+T +  +R   R G G+    ++   + G LV +  V++  
Sbjct: 703 -----EQKLLSVSSKGIGKQTLAGAYRAQGRGGLGVIGVKITP--KTGHLVGIVSVDEGQ 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++L++  G +IR+P+  IR   R   GV +     DE VV      + E+ 
Sbjct: 756 DLMLLTKSGKMIRMPMETIRETGRNASGVKLVQMESDE-VVYASTCPKEEVE 806


>gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 864

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/911 (39%), Positives = 536/911 (58%), Gaps = 90/911 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 5   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 64  HERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 124 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 184 GIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEYIKGPDFPTAGIIMGRSGIRAA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L 
Sbjct: 244 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLN 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +L+ 
Sbjct: 304 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 364 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 423

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 424 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 457

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I+    IL+  +R+L I+K+ELL +K      RRT I     +++ ED I  E  V
Sbjct: 458 LQAKIENWEAILADDARVLAIVKEELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 517

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQRRGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 518 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 577

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   + E+     +V   TK G ++R
Sbjct: 578 RIKGYTIAEGSRTSKGSNIVNLLQLAEGEKVTNMICQSK-EADTEGGFVTMVTKQGLIKR 636

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF  +  R    R
Sbjct: 637 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEADARPMG-R 695

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  GVR I LA+GD+V+ + I                                       
Sbjct: 696 SGHGVRAIRLAEGDEVVGVCICREGG---------------------------------- 721

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +LTV+E G G+R+    +RI+ R GKGIR  D +K     
Sbjct: 722 -------------------TVLTVTENGKGRRSDIDTYRITARGGKGIRNYDAAKD---- 758

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + AV  V+D D ++L S +G +IR+  NEI + SR   GV +    ++++V+ + R   
Sbjct: 759 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLAR--- 815

Query: 900 SEIVDEAESTE 910
           ++  DEA++ +
Sbjct: 816 TDHDDEAQTEQ 826


>gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
          Length = 873

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/897 (39%), Positives = 508/897 (56%), Gaps = 73/897 (8%)

Query: 1   MTEHIISS----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +   +     +E+ +  I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADETSTPAAAEEEQPQMRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+ +IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  +L D+ +DTVDF+ NYDG  QEP VL AR PN+LV
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLV 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    +++P+   + L+    E I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ R
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQVNPDNLAQKIADLVKDGR 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 IGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EVVVRRT++ L KA +RAH+L GL  A+ ++DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                            + + EVQ  AILE++L RL  L R 
Sbjct: 420 IARAGLMD--------------------------LLSIDEVQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   L  +I E   IL+S  +   I+ +EL  + ++    RR+++V    DM  ED
Sbjct: 454 KILQEHAELQEKINEYNAILASPEKQRRIVSEELAVIVEKYGDDRRSQLVPFDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTISRGGYVKRTRTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    ERI  I+   + E++    Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDERIAQILAVRDYEAA---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS--------RDEILSVETCTQENDILLTTKLG 703
           TK G V++  L D+      G IA+ L           DE++  E  +  +D+LL +K  
Sbjct: 631 TKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAADDLLLISKKA 690

Query: 704 QCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYM 755
           Q +RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    
Sbjct: 691 QSIRFTATDEALRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVD 750

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           ++    R  +     +I   +   S+ G +  E   E       IL ++  G   RT   
Sbjct: 751 EYRVQGRGGLGIKAAKIVEDRG--SLVGALVVEESDE-------ILAITLGGGVIRTRVN 801

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVA-------VFPVNDNDQIILV--SDKGTLI 863
           + R + R   G++  ++ K + +  +            V+  D+  +V  +D GT +
Sbjct: 802 EVRETGRDTMGVQLINLGKRDAVVGIARNAEAGHEADEVDGTDEAAVVDGTDTGTAV 858



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 98/270 (36%), Gaps = 17/270 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE------D 575
           E +  +           +V  +  G VK+ PL  Y + R GG     +   D       D
Sbjct: 610 ERIAQILAVRDYEAAPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGTAD 669

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++  
Sbjct: 670 ELIGAELVSAADDLLLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLSMNV 728

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQ 692
                      +V  AT  G  +R  + ++    R G   K A  ++ R  ++      +
Sbjct: 729 VR------PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEE 782

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + DE  
Sbjct: 783 SDEILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGHEADEVD 841

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
              +              E    +  +   
Sbjct: 842 GTDEAAVVDGTDTGTAVSEGEGTEPSAGER 871


>gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
 gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
          Length = 852

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/897 (40%), Positives = 533/897 (59%), Gaps = 111/897 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++     + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 7   KDSDTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAY 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  AA RYT
Sbjct: 67  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 127 EARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+VDG + ++DN +  L+ +M+ I+GPDFPT  +I G+ GI +AY TGRG I IR
Sbjct: 187 PHSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  IA++RDESDR+G RVV
Sbjct: 247 AKTHIE-KRANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++R
Sbjct: 306 IELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +           
Sbjct: 366 RTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL
Sbjct: 415 ---------------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + L  +I++EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRV
Sbjct: 460 KSEALLEDLIREELKEIKAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRV 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS 
Sbjct: 520 PSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSR 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  +   S +   + F TK+G V+R  LS++  I   
Sbjct: 580 TAKGKAVVNLINLQAEEKIMAIIPTSDFAESKS---LCFFTKNGIVKRTNLSEYQNIRSV 636

Query: 672 GKIAMKLDSRDEILSVETCT---------------------------QENDILLTTKLGQ 704
           G  A+ LD  DE+++                                    +   TK G 
Sbjct: 637 GVRAINLDENDELVTAIIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFAVTKRGM 696

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           C++FP++ +R    R S GV  I   + +  +  A+V+  D                   
Sbjct: 697 CIKFPLAKVREIG-RVSRGVTAIKFKEKNDELVGAVVIEND------------------- 736

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                           EQ +L+VS KG GKRT++ ++R+ +R G
Sbjct: 737 --------------------------------EQEVLSVSVKGIGKRTNAGEYRLQSRGG 764

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           KG+    ++  ++   L++V  V+++  ++ ++  G +IRV ++ IR A R T GV+
Sbjct: 765 KGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGVI 819


>gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 842

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/824 (41%), Positives = 505/824 (61%), Gaps = 28/824 (3%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD  AA RYTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIP 121

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+L+NG  GIAVGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I 
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY 181

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291
           G +G++  Y TGRG +V+R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK
Sbjct: 182 GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEK 241

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           R+  I+D+RDESD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P  
Sbjct: 242 RVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRL 301

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ F+  R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P 
Sbjct: 302 LNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPP 361

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRA 456
            A++ELM RSW++  ++D++   +  +               + +  DG   LS+ Q + 
Sbjct: 362 IAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQE 421

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    R
Sbjct: 422 ILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDER 481

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R++I     +++ ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D+
Sbjct: 482 RSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDW 541

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  LF+ +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P 
Sbjct: 542 IDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPV 601

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            + +      +V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D+
Sbjct: 602 KQFDEQ---HFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDV 658

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  + +R    R + GVRG++L +G QVI+M +     A   E+     
Sbjct: 659 MLFSDAGKAVRFDENDVRPMG-RQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS 717

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGF 808
            ++A        T      ++    +G I+ +  +         L   E  I+ ++  G 
Sbjct: 718 VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGV 777

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             RT   + R   R+ +G+    V + N++  L  V   +   +
Sbjct: 778 LIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVESDAEGE 821


>gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A
 gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni]
 gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 863

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
 gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
          Length = 830

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/898 (38%), Positives = 530/898 (59%), Gaps = 91/898 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+  PD+ ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKVR 243

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+     RE I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++  +V  R EV+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISVWVRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LD+VV  IR S + E A+ +L+++          
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEK---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 414 ----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFSN 634

Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE++ +V   ++E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV    +                                       
Sbjct: 694 VSLKNEKDRVVACQIVRDDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +V++E++  +E  
Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDE 816


>gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 862

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/916 (35%), Positives = 496/916 (54%), Gaps = 97/916 (10%)

Query: 6   ISSDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +S D     G I  V +  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G
Sbjct: 1   MSEDTVYNHGLIKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              +  + K A++ G+VMG YHPHG+ AIYD + R+ Q WS+R  L+ GQGNFG+     
Sbjct: 61  YRPDNSFSKSAKVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTPGDLG 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+   A  ++ D+ + TVDF PNYDGS  EP VL +R+PN+LVNG  GIAV
Sbjct: 121 AAAPRYTEVRMAPLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSEGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNA 240
           GMAT IP HNL EV  G    ++NPD   + L+    + I+GPDFPTGA+ILG  GI++ 
Sbjct: 181 GMATRIPPHNLREVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTRGIEDM 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG GSI  R V  +++    R+ +VVT++PYQVN   +L+K+ E +++ R+  IAD+R
Sbjct: 241 YRTGHGSITQRAVVEVDEIH-GRQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGIADIR 299

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE+  R G R+V+ LK+ A A V+LN LY++T LQ+ F  NM+AL    P   +L G ++
Sbjct: 300 DETSGRAGQRIVVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVDGVPRTLSLDGFVR 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V F+ EV++RRT+Y L +A  R H+L G   A+  LD V+ +IR S   + AR  LM 
Sbjct: 360 HWVTFQMEVILRRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLARTGLMD 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                      + + E Q  AILE++L RL  L R  I +E   
Sbjct: 420 --------------------------LLEIDEDQANAILEMQLRRLAALERQKIIDEYEE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
               + +  DI++   R   II +EL ++ D+    RRT I+    +M  ED I  ED+V
Sbjct: 454 KAALVADYKDIIAKPERQRAIIGEELGAIVDKYGDDRRTTILPFDGEMSVEDLIPEEDVV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++  G++KR   S YRAQ RGGKG  G  +R +D V    + STH   LFF++LG VY
Sbjct: 514 VTITRGGFIKRTKTSEYRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNLGRVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P     A+G+ + N+L+   GE I + +     + +    Y+V AT  G V++
Sbjct: 574 RIKGYEIPEAGRDAKGQHIANLLAFQPGETIASTITLKGYDQAQ---YLVLATADGLVKK 630

Query: 660 NKLSDFIQINRSGKIAMKLDSR----DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +LSD+      G IA+KL       D +++     +++D+LL ++ G  +RF  +   +
Sbjct: 631 TRLSDYDSPRTGGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLRFKATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR S GV G+   +GD +++M +V                                 
Sbjct: 691 RPMGRPSSGVTGMKFREGDSLLTMRVVRD------------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +  V+E GF KRTS  ++RI  R+G GI+   +++
Sbjct: 720 ----------------------NAEVFVVTEGGFAKRTSVDEYRIQGRAGLGIKVAKLTE 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             E G LV    + + + ++++ + G ++R    E+    R T+GV        +R++++
Sbjct: 758 --ERGDLVGAL-ITEGEDVMVIMESGKVMRASAAEVSKTGRNTQGVTFARPDGGDRIIAI 814

Query: 895 ERIRESEIVDEAESTE 910
            R  E+ I  E   ++
Sbjct: 815 ARNIETTIEAEVGQSD 830


>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
 gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
          Length = 826

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/910 (40%), Positives = 555/910 (60%), Gaps = 93/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FILSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIADLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R
Sbjct: 627 NLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIG-R 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV GI L + D V+  A+V+  D +                                
Sbjct: 686 TTRGVIGIKLNENDFVVG-AVVISGDGNK------------------------------- 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV +  V+D +  +++++    +IRV + +IR   R T GV + +TA  ++V+ V    
Sbjct: 752 NLVGIISVDDENLDLMILTASAKMIRVSIKDIRETGRKTSGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAES 908
           + E  +  E+
Sbjct: 810 KEEESEILEN 819


>gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1]
 gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 836

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/904 (38%), Positives = 528/904 (58%), Gaps = 92/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRT+I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V    +                                       
Sbjct: 694 VSLKNEQDFVVSCQVVTEDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++   +E V+
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVE 818

Query: 905 EAES 908
             E+
Sbjct: 819 TEEN 822


>gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 862

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ I++ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
 gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
          Length = 858

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/902 (40%), Positives = 539/902 (59%), Gaps = 116/902 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I ++ I   +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 7   KDSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAY 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   ++GQGNFGS+DGD  AA RYT
Sbjct: 67  KKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGAAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 127 EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 187 PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE    +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVV
Sbjct: 247 AKTHIE-KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +LK F+  R+ V++R
Sbjct: 306 IELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLKLFLNHRKTVIIR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+           
Sbjct: 366 RTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+   +IL
Sbjct: 415 ---------------FGLSELQSNAILDMKLGRLTGLEREKIDNELKELLAEIERLDEIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + L  +IK EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRV
Sbjct: 460 KSEALLENLIKDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRV 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKG+  V   D+DF+ + F  +TH +++F +  G +Y  KV+++P GS 
Sbjct: 520 PSKQYEKQKRGGKGKVAVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSR 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I   
Sbjct: 580 TAKGKAVVNLINLQADEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRSV 636

Query: 672 GKIAMKLDSRDEILSVETCTQEN--------------------------------DILLT 699
           G  A+ LD  DE+++     ++                                  +   
Sbjct: 637 GVKAINLDENDELVTAIIVARDENEMSNQALEDEENLENEVLENNEELENVAVGKMLFAV 696

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           TK G C++FP++ +R    R S GV  I   + +  +  A+V+  DA             
Sbjct: 697 TKKGMCIKFPLAKVREIG-RVSRGVTAIKFKEKNDELVGAVVIENDA------------- 742

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                 Q IL+VS KG GKRT + ++R+
Sbjct: 743 --------------------------------------QEILSVSAKGIGKRTDAGEYRL 764

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R GKG+    ++   +   L++V  V+++  ++ ++  G +IRV +  IR A R T G
Sbjct: 765 QSRGGKGVICMKLNA--KTKDLISVVIVDESMDLMALTTSGKMIRVDMQSIRKAGRNTSG 822

Query: 880 VV 881
           V+
Sbjct: 823 VI 824


>gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1]
 gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 863

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  +   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074]
          Length = 836

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/904 (38%), Positives = 527/904 (58%), Gaps = 92/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+I EL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V    +                                       
Sbjct: 694 VSLKNEQDFVVSCQVVTEDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++   +E V+
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVE 818

Query: 905 EAES 908
             E+
Sbjct: 819 TEEN 822


>gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818]
 gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 824

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/886 (39%), Positives = 533/886 (60%), Gaps = 87/886 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D   E     V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ +   
Sbjct: 2   DSLLEDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPR 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA 
Sbjct: 62  RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+  A+  +L D+ KDTV+F PNYD +  EP VL +R PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP H + E++D  + VIDN   ++D ++E+++GPDFPTG +I G+ GI  AY TGRG I
Sbjct: 182 SIPPHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R   HIEKT   ++ IV+ E+PYQVNKA ++E+I+EL +EK I  IA++RDESDR+G 
Sbjct: 242 RVRAKVHIEKTKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F + ++A+N  +P+ F L+ +L+ F+A R+ +
Sbjct: 301 RVVIELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + L KA+ RAH+L GL IA+ N+DE++RIIR S + E A+  L+++        
Sbjct: 361 IIRRSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEK-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AILE+RL RLTGL RD I  E   L  +I    
Sbjct: 413 ------------------FSLSELQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL S  +L  I+K ELL +K++  + R+T+I E    ++ ED I  E +VVT+SH GYV
Sbjct: 455 SILKSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEKVVVTMSHRGYV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV L  Y  Q RGGKG+      ++DF+   F+ +TH +++F ++ G +Y  KV+++P 
Sbjct: 515 KRVLLKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A GKA++N+++L+  E+I   +   +     ++  +VF TK+G V+R  L ++  I
Sbjct: 575 AGRTAIGKAVVNLINLSPDEKIMATITTTDFN---DDKSLVFFTKNGIVKRTNLKEYSNI 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              G  A+ LD  DE+++         ++ + T+ G C+RF I  +R    R   GV GI
Sbjct: 632 RSVGVRAINLDENDELVTAHIVGSSVKELFIATQQGMCIRFGIDELREIG-RVGRGVTGI 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                +  +  A  + +D D                                        
Sbjct: 691 KFKASEDCVIAATTITSDTDK--------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTVSE+G GK+T + ++R+ +R+GKG+    ++   + G LV+V  +
Sbjct: 712 ------------LLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTP--KTGKLVSVVNI 757

Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ND N  +++++  G +IRV    IR A R T GV I +   +++V 
Sbjct: 758 NDENMDLMVLTSSGKMIRVDTEAIREAGRNTSGVKIVNVG-NDKVA 802



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 105/238 (44%), Gaps = 17/238 (7%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731
           + + LD+ DEI+ +   +++      T+  +       ++     +  + +R   L   +
Sbjct: 382 LIIALDNIDEIIRIIRASKD------TEEAKNALVEKFSLSELQAKAILEMRLQRLTGLE 435

Query: 732 GDQVISMAIVLHADADYDERICYMKH-MSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            D++ +    L     Y E I   +  + +  +    + +E  S K  + +E +      
Sbjct: 436 RDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDI 495

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E+ ++T+S +G+ KR     +   NR GKG  + +  + +    + + F  N +
Sbjct: 496 EDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNTHEDD---FIESFFVANTH 552

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           D I+ V++KG L  + V +I  A R   G   V + + + DE++  +  I  ++  D+
Sbjct: 553 DTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKI--MATITTTDFNDD 608


>gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
 gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
          Length = 970

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/915 (38%), Positives = 511/915 (55%), Gaps = 76/915 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +S +     +  VS+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  
Sbjct: 64  ASGDSIANELLPVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNV 123

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           W+    K AR+ GEV+GK+HPHG++A Y  + RMAQD+S+R  LI GQGNFGS+DGD  A
Sbjct: 124 WSSPTKKAARVVGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAA 183

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  +L DL +DTVDF PN+D S  EPVVL  R P +LVNG  GIAVGM
Sbjct: 184 AMRYTEVKLMKIAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGM 243

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E +D CV  +++PD  +D L+ +I  PDFPTG ++ G +G+   Y TGRG
Sbjct: 244 ATNIPPHNLRETIDACVHALEHPDCSVDDLIALISAPDFPTGGIVYGLSGVYEGYRTGRG 303

Query: 247 SIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +++R  +H+E+   D  R +IVV EIPY VNK  + E++ EL R+K++  I+++RDES 
Sbjct: 304 RVIMRARTHLEEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDEST 363

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R   R+ I+LK+GA  +V+LN L++ T +Q  F +NMVAL   +P    L  ++  F+  
Sbjct: 364 R-QIRIAIDLKQGAMPEVVLNNLFKNTQMQESFGMNMVALVDGQPMLLNLKQMVVYFLEH 422

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT + L K+R   H+L G AIA+AN+DE +R+IR +   E A++ LM R W  
Sbjct: 423 RREVVTRRTIFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPL 482

Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
               ++                D    +  DG  YL++VQ   IL + L RLTGL R+ I
Sbjct: 483 GFAAEITRRAAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKI 542

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDC 532
             +  +    I + +DIL    R+  IIK+ELL+ ++     RR+ I +    +    D 
Sbjct: 543 LADYAATMERIFDLIDILHKPERVTAIIKEELLACREAYGDERRSTIDLSEDTNFNKRDL 602

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I R DMVV+++  G+VK   L+ Y AQ RGGKGR+      +D +   F+ +TH  +L F
Sbjct: 603 IPRRDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCF 662

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G VY   V+ LP G   +RG+ ++N+L L + E+I+ I+P  E      + Y+  AT
Sbjct: 663 STAGQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQE---FSEDRYMFLAT 719

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G VRR  LS F    R G  A  L    +++ V   + ++D+ L    G+CV F  S 
Sbjct: 720 DRGTVRRTPLSAFSSARR-GIRATNLGDE-KLVGVTITSGDDDVFLLADNGRCVHFKEST 777

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IRV   R + GVRG+ +   + V+++A      +  D    ++                 
Sbjct: 778 IRVMG-RTAHGVRGMRVKADESVVALA------STNDMTQAFL----------------- 813

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                          +E GFGKRT+   + + NR GKG+ A  V
Sbjct: 814 -----------------------------IATEHGFGKRTALAAYPLRNRGGKGVIAIRV 844

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + N  GA V+   V   D I+L+S  G ++R    E+    R T G ++     D+ + 
Sbjct: 845 IEKN--GAPVSGVIVKPEDDIMLLSTGGKVVRTRAGEVPERGRNTVGNILIRM-PDDTLA 901

Query: 893 SVERIRESEIVDEAE 907
           +V R+  +   DE+E
Sbjct: 902 AVRRVDRTGEEDESE 916


>gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
 gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
          Length = 823

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/890 (40%), Positives = 515/890 (57%), Gaps = 84/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV     + K 
Sbjct: 17  RVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSGSSHRKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + + GEVMG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+DGDP AA RYTE R
Sbjct: 77  SSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAMRYTEAR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF+ NYD   +EP VL + +PN+LVNG  GIAVGM+TNIP HN
Sbjct: 137 MAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNGSSGIAVGMSTNIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  + +IDNPD ++  LME ++GPDFPTGA I+G+  I  AYATGRG + +R   
Sbjct: 197 LGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIVGKNAIHAAYATGRGRLTVRAEY 256

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+T   R +IV+TEIP+Q NKA M+E+IA+ V E  I  ++DLRDESDR G RVVIE 
Sbjct: 257 EFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSDLRDESDRDGVRVVIEC 316

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+ DV+ NQL  +  L+S F V  +AL   +P   TL   L+ +VA R+EVV RR++
Sbjct: 317 KRGANVDVVENQLLDH-HLESTFGVINLALVDGEPRVLTLKETLEEYVAHRKEVVRRRSE 375

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +A DRAH+L G   A+ N+D VV +IR S + + A+  L +               
Sbjct: 376 FDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALEE--------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   S  Q + I+ ++L  LT +   ++ +E   +  EI+    IL+  
Sbjct: 421 -----------TFDFSTEQAQHIVRMQLGSLTSMEAAEVEDEYEEVEAEIERLETILNDE 469

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S LL +IK EL +VKDE D  RRT IVE    +  ED I  E+ +V V+   Y+KR+P  
Sbjct: 470 SELLDVIKDELRAVKDEYDDDRRTSIVEDDGTVTREDLIPEEECLVVVTEDDYIKRMPAD 529

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            + AQ RGGKG  G   ++ D V+ +F  +TH  +L F++ G VY+ + + +P  S  AR
Sbjct: 530 RFDAQHRGGKGIIGADPKEGDRVSTVFRANTHDYLLAFTNHGQVYRLRTYEIPEMSRTAR 589

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK+ +N+++ + GE IT ++   E +   ++  +  AT+ G V+R   S+F  I  +G I
Sbjct: 590 GKSAVNLINFDDGEEITAVVSMDEFD---DDECITMATRQGYVKRTCCSEFENILSTGII 646

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KL+  DE++       E+D+++ T+ G  +RF  +  R    R + GVRGI L  GD 
Sbjct: 647 AAKLEDGDELVDAVVTDGESDLVIATEDGMTIRFDETEARQMG-RTARGVRGIDLRDGDN 705

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +      D                                                 
Sbjct: 706 VAGVVATDEHD------------------------------------------------- 716

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E+ +LTV+E+G+GKRT   ++R  +R GKG+   D+   +  G + AV  V ++D +I
Sbjct: 717 --ERALLTVTERGYGKRTPLSEYRTQSRYGKGL--IDIKTGDRNGGVTAVNAVAEDDHVI 772

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++S  G ++R PV ++    R T GV I   A D+ V SV+ I  + I D
Sbjct: 773 VMSATGQIMRCPVEDVSTVGRNTMGVTIMDVAADDTVASVDVIPGTAIED 822


>gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46]
 gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
 gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
          Length = 783

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/854 (38%), Positives = 480/854 (56%), Gaps = 91/854 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L K  +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR---GYTDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV+G+     D+++S+ +V                                 
Sbjct: 691 RPMGRATSGVQGMRFNIDDRLLSLNVVREG------------------------------ 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L  +  G+ KRT+  ++ +  R GKG+    V  
Sbjct: 721 -----------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMY 755

Query: 835 INEIGALVAVFPVN 848
               G LV    V 
Sbjct: 756 DRRRGRLVGALIVR 769



 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 19/238 (7%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+  IA   D  DE    +   +E+ ++  T+ G   R      R    R   GV+G  
Sbjct: 494 RRTRIIAADGDVSDE----DLIAREDVVVTITETGYAKRTKTDLYRS-QKRGGKGVQGAG 548

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D +++   V     D          +   +     +       ++ +++     EE
Sbjct: 549 LKQDD-IVAHFFVCST-HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEE 606

Query: 789 RCQEL-----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           R  ++          +++  +  G  K++   DF  SNRSG GI A ++   +E   LV 
Sbjct: 607 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD-SNRSG-GIVAVNLRDNDE---LVG 661

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
               + +D ++LVS  G  IR    +  +R   RAT GV       D+R++S+  +RE
Sbjct: 662 AVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE 719



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 98/228 (42%), Gaps = 9/228 (3%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +   LD+ DE++++   ++  DI    + G      I  I+  A  +    R  +L +  
Sbjct: 394 LVKALDALDEVIALIRASETVDI---ARAGLIELLDIDEIQAQAILDMQLRRLAALERQR 450

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +  +A +    AD ++ +   +      R    +  +       + +     +   ++L
Sbjct: 451 IIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDL 510

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E  ++T++E G+ KRT +  +R   R GKG++   + + +    +   F  + +D I
Sbjct: 511 IAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDD---IVAHFFVCSTHDLI 567

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIR 898
           +  + +G + R    ++  ASR  +G  + +      +ER+  V +IR
Sbjct: 568 LFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR 615



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 94/275 (34%), Gaps = 10/275 (3%)

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687
           I       +++       VV  T+ G  +R K   +    R GK      L   D +   
Sbjct: 499 IAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHF 558

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
             C+  + IL  T  G+  R     +   A R + G    +L        +A V+     
Sbjct: 559 FVCSTHDLILFFTTQGRVYRAKAYDL-PEASRTARGQHVANLLAFQPEERIAQVIQIRGY 617

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEK 806
            D     +   +   +       +        +V    ++E     L   +  +L VS  
Sbjct: 618 TDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSAN 677

Query: 807 GFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           G   R S+ D   R   R+  G++    +  +    L+++  V +   +++ +  G   R
Sbjct: 678 GQSIRFSATDEALRPMGRATSGVQGMRFNIDDR---LLSLNVVREGTYLLVATSGGYAKR 734

Query: 865 VPVNEIRIASRATKGV-VIFSTAKDERVVSVERIR 898
             + E  +  R  KGV  +    +  R+V    +R
Sbjct: 735 TAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVR 769


>gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
          Length = 836

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/904 (38%), Positives = 530/904 (58%), Gaps = 92/904 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E  +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II++EL  +     TPRRTRI     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F  
Sbjct: 578 GERKAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMG-RAARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D V+S  +V                                            
Sbjct: 694 VSLKNEQDFVVSCQVV-------------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     ++Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++   
Sbjct: 710 ---------TEDQSVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVD 904
            V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++   +E V+
Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESVE 818

Query: 905 EAES 908
             E+
Sbjct: 819 TEEN 822


>gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
 gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
          Length = 864

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/929 (37%), Positives = 506/929 (54%), Gaps = 104/929 (11%)

Query: 1   MTEHIISSDEEEEKGI----TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+    S  EEE  I      V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+   + L+    E I+GPDFP+GA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQVNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                          G + + E+Q  AILE++L RL  L R 
Sbjct: 420 IAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E   IL+S  R  GII +EL ++ ++    RR+++V    DM  ED
Sbjct: 454 KIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYGDDRRSKLVPFDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVT++  GY+KR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+             +  ++ F  DE+          
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQH------------VANLLAFQPDEAI--------- 612

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                                          EIL++        ++L TK G   + P+ 
Sbjct: 613 ------------------------------AEILAIRDYEAVPYLVLATKGGLVKKTPLK 642

Query: 712 AIRVFAGRNSVGVRGISLAK-----GDQVISMAIVLHADADY-DERICYMKHMSAQRRLI 765
                    S GV  I+L +      D++I   +V   D      +       +A    +
Sbjct: 643 DYD---SPRSGGVIAINLRETEDGSDDELIGAELVSAEDDLLLISKKAQSIRFTATDEAL 699

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                  + +K  S  EG   E     +     F+ T ++ G+ KRT+  ++R+  R G 
Sbjct: 700 RPMGRATSGVKGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTAVDEYRVQGRGGL 757

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R T GV + + 
Sbjct: 758 GIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINL 815

Query: 886 AKDERVVSVERI----RESEIVDEAESTE 910
            K + VV + R     RE+E VD  ++ +
Sbjct: 816 GKRDAVVGIARNAEAGREAEEVDGGDAVD 844



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E + ++           +V  +  G VK+ PL  Y + R GG     +   ++   D + 
Sbjct: 610 EAIAEILAIRDYEAVPYLVLATKGGLVKKTPLKDYDSPRSGGVIAINLRETEDGSDDELI 669

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 670 GAELVSAEDDLLLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLSMNVVR- 727

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 728 -----PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 782

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E     
Sbjct: 783 ILAITLSGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGGD 841

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
                   + +  T+E     ++
Sbjct: 842 AVDETTEGIEAAGTDEGEQSSDE 864


>gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 863

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 788

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/861 (40%), Positives = 519/861 (60%), Gaps = 85/861 (9%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPD
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPTGA+++G++GI  AY TG+GSI +R  + IE T   RE+IVVTE PY VNK  + E I
Sbjct: 181 FPTGALVMGKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHI 240

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
             LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+
Sbjct: 241 VRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAI 300

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P+  +L  IL A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RII
Sbjct: 301 QNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRII 360

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S     A+ ELM +                            LSE Q++AIL++RL R
Sbjct: 361 RASETDAEAQAELMSK--------------------------FKLSERQSQAILDMRLRR 394

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEG 523
           LTGL RD I++E + L   I +  DIL+   R+  IIK EL  VK +    RRT + V  
Sbjct: 395 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQ 454

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   
Sbjct: 455 VLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST 514

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           STH  +LFF++ G VY+ K + +P     A+G  ++N+L L++ E I T++    D S  
Sbjct: 515 STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS-- 572

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G
Sbjct: 573 DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFG 632

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VRF  SA+R  + R + GV+G++L +GD V+  +++   D                  
Sbjct: 633 YAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLITDQD------------------ 673

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            E  I+T    G  KRT + ++    R 
Sbjct: 674 ---------------------------------EVLIITEKGYG--KRTVATEYPTKGRG 698

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKG++   +++ N  G L  +  V  ++ +++++D G +IR  +  I    RAT GV + 
Sbjct: 699 GKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVM 756

Query: 884 STAKDERVVSVERIRESEIVD 904
              +D ++V+   +  +E  +
Sbjct: 757 RLDQDAQIVTFTTVAVAEKEE 777


>gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
 gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
          Length = 819

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/898 (37%), Positives = 504/898 (56%), Gaps = 90/898 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V + +EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M + G    K + 
Sbjct: 3   EQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKAFS 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+VMG++HPHG+AAIYDAL R+ Q W++R  L +GQGNFGS   D  AA RYTE
Sbjct: 63  KCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF PNYDG   EP V+  R+PN+LVNG  GIAVGMATNIP 
Sbjct: 123 TKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G +  ++NPD   +     L+E I+GPDFPTGA +L   GIK+AY TGRGS+
Sbjct: 183 HNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGSV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307
           V+RGV  IE+    R  +VV E+PYQVN   +  KIA LV+E ++  IAD+RDE+  R G
Sbjct: 243 VMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRTG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R++I LKR A A V+LN LY++T LQ  F VNM+A+    P   +L   ++ +V  + E
Sbjct: 302 QRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCSFIRLWVEHQIE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT + L +A  RAH+L     A+  +DEV+++IR S + E A+  LM         
Sbjct: 362 VIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMA-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + E Q RAIL+L+L RL  L R  I +E   +   I   
Sbjct: 414 ------------------LLKIDETQARAILDLQLRRLAALERQRIISEAREIEELISSF 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLG 546
             ILS ++    +I +EL  +  +    RRT I+ G    +  ED I  E +VV ++  G
Sbjct: 456 RKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIEDLIPVEPVVVVMTRCG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YR+Q RGG+G  G  ++ +D V      +TH  ++FF++ G VY+ K + +
Sbjct: 516 YIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEV 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +ARG+ + N+L L   E +T I+     +S   +  +V ATK G V++  L ++ 
Sbjct: 576 PEASREARGQHVANLLPLKPNEAVTRILSVSNFDS--EDTSLVLATKDGYVKKTTLKEYD 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +G IA+KL   D+++S      + DI+L TK  + +RF    +R  + R S GV+G
Sbjct: 634 TSLSTGVIAIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLS-RGSYGVKG 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL + D ++S  ++L  D+                                        
Sbjct: 693 ISLRENDLLLSAELILSDDS---------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       +I  VSE+G+ KR+   D+++  R G G+R  ++++    G L  +  
Sbjct: 713 ------------YIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQ--KGVLADMLV 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           VND+D+++++   G +IR  V E+    R T GVV    +  ++++++    + + ++
Sbjct: 759 VNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDGDKILAMTIAEKCDDLE 816


>gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 842

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/824 (41%), Positives = 505/824 (61%), Gaps = 28/824 (3%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD  AA RYTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIP 121

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+L+NG  GIAVGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I 
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY 181

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291
           G +G++  Y TGRG +V+R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK
Sbjct: 182 GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEK 241

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           R+  I+D+RDESD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P  
Sbjct: 242 RVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRL 301

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ F+  R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P 
Sbjct: 302 LNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPP 361

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRA 456
            A++ELM RSW++  ++D++   +  +               + +  DG   LS+ Q + 
Sbjct: 362 IAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQE 421

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    R
Sbjct: 422 ILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDER 481

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R++I     +++ ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D+
Sbjct: 482 RSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDW 541

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  LF+ +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P 
Sbjct: 542 IDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPV 601

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            + +      +V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D+
Sbjct: 602 KQFDEQ---HFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDV 658

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  + +R    R + GVRG++L +G QVI+M +     A   E+     
Sbjct: 659 MLFSDAGKAVRFDENDVRPMG-RQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS 717

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ--------ELKLKEQFILTVSEKGF 808
            ++A        T      ++    +G I+ +  +         L   E  I+ ++  G 
Sbjct: 718 VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGV 777

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             RT   + R   R+ +G+    V + N++  L  V   +   +
Sbjct: 778 LIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVESDAEGE 821


>gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica]
          Length = 855

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/913 (38%), Positives = 525/913 (57%), Gaps = 98/913 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  +++ +E+  S+L Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+GV   K +V
Sbjct: 3   NDSIKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKAHV 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I GE MG +HPHG+ +IY  L  M Q WS+R +L++GQGNFGSV+GD  A+ RYTE
Sbjct: 63  KCAKIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL      +++DL K TVDF+PNYDGS +EP VL + +PN LVNGG GIAVGMATN+  
Sbjct: 123 ARLHPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNLAP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG  A ID PDI L  LM+ I+GPDFP    I G  GI+  + TGRGS+ +RG
Sbjct: 183 HNLGEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIRGIEEYFRTGRGSMRLRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IE+    +  IV+ E+PY VN+A + E+IAELV EK +  I+ +RD SD +   + I
Sbjct: 243 KVEIEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEETR-IEI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A   V++ QL++ T+L++ FSVNM+A++  +P++ +L   + A++  R +V++RR
Sbjct: 302 ELKRDARPQVVVAQLFKLTALETSFSVNMLAIHQNRPKQLSLKEAIDAYIEHRRDVIIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++LL KA +RA +L    +A+ +LD+ +RIIR S N + AR     R            
Sbjct: 362 TRFLLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEARELQGDR------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AILELRL +LTG+ +D ++ E + + IEIK+ LDIL+
Sbjct: 410 --------------YVFSERQVNAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              R+L IIK EL  ++D+  TPR+  I+    ++  ED I  + M+VT+SH GYVKR P
Sbjct: 456 REVRVLTIIKDELRVIRDKYATPRKCPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRTP 515

Query: 553 LSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            + YR Q RGGKG  G+  +       +DFV  LF V  H  +LFF++ G VY E+V+ L
Sbjct: 516 ATEYRLQGRGGKGLKGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFEL 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPF--------PEDESSWNNLYVVFATKHGNVR 658
           P GS  + G+++ N+L+L   E+I  ++           +     +  +V FAT++G V+
Sbjct: 576 PEGSRTSTGRSIKNVLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKVK 635

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L+DF    + G IA+ LD  ++++ V   + E++I+L T+ G  ++F     ++   
Sbjct: 636 KTALNDFRNYRKDGIIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRPQ 695

Query: 719 -RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV GI L K D V+ MAIV                                    
Sbjct: 696 GRATAGVTGIRLRKDDYVVGMAIVS----------------------------------- 720

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                             +E  +L  SE G GKRT+   +R   R G G++  +V+  ++
Sbjct: 721 ------------------EETMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVT--DK 760

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V + D+++L++  G  IR+ VNEIR   R  +GV + +  + E++  +  +
Sbjct: 761 TGKVVNAVSVTEQDELMLMTSTGQSIRIRVNEIRETGRVAQGVKLLTLKEGEKLQDISLV 820

Query: 898 RESEIVDEAESTE 910
              +  D+A S++
Sbjct: 821 I-PDGEDDAGSSD 832


>gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 704

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/702 (49%), Positives = 480/702 (68%), Gaps = 12/702 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV+
Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++
Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ V
Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 519 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 578

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
             L+     N +D I+  S +G +  + V ++  A+R  +G   V +    +DER+ ++ 
Sbjct: 579 DRLLVA---NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL 635

Query: 896 RIRESEI 902
            + E E 
Sbjct: 636 PVTEFEE 642



 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 64/204 (31%), Gaps = 13/204 (6%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F    R+   A   D   E    +  TQE+ ++  +  G     P+S       R   
Sbjct: 511 EQFGDKRRTEITANSADINLE----DLITQEDVVVTLSHQGYVKYQPLSEYEA-QRRGGK 565

Query: 723 GVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G     + + D +  + +    D           Y   +        G            
Sbjct: 566 GKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPL 625

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I+         +   +   +  G  K+T   +F     +GK   A  + + +E  
Sbjct: 626 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV--AIKLVEGDE-- 681

Query: 840 ALVAVFPVNDNDQIILVSDKGTLI 863
            L+ V   +  D+++L S +G ++
Sbjct: 682 -LIGVDLTSGEDEVMLFSAEGKVV 704


>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
 gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
          Length = 818

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/854 (40%), Positives = 524/854 (61%), Gaps = 39/854 (4%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+++ I++  +    G+    +  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G+   + + K AR  G+V+GKYHPHG++A+YD + R+AQD+S+R+ L++G GNFGS
Sbjct: 61  MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE RL K A  LL DL K+TVD++PNYD S QEPVVL AR+PN+LVNG 
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    ++DNPD+ +D LM++I GPDFPTG +I+GR GIK+
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKD 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ +R    I ++   ++ IV+TEIPYQVN+  +++KI ELVR+K++ +I+++
Sbjct: 241 AYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNV 300

Query: 300 RDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR     ++I+LK  A   V+LN+LY++T LQ  F V  +AL    P   +L  +L
Sbjct: 301 HDGADRNSPVDIIIDLKSNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREML 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  +E+V+VRRT++ L KA +RAH+L GL IA+ N+DEV++IIR S     A   L 
Sbjct: 361 RHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQ 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            LSE QT AILE+RL RLTGL R  + +EL 
Sbjct: 421 ER--------------------------FNLSEAQTAAILEMRLRRLTGLERHKLEDELA 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I     ILS  S +  +IK+ELL +K   +TPRRT +     D++ ED I  E++
Sbjct: 455 ELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDVEDLIADEEV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            VTV+  GYVKR+P+S YR Q+RGGKG  GV +++ DFV  LF+ STH+ +LFFS+ G V
Sbjct: 515 AVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ KV+ +P  S  ARG A++N+L L +GE I  ++   +      + Y++F T+ G V+
Sbjct: 575 YRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKD---FPEDEYLMFGTEQGMVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  ++ + +  R G IA+ L   D++++V       D+++ +  G+ +++    +R    
Sbjct: 632 KTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSMG- 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R+++GVRG+++    +V+ + I     D        Y K              +      
Sbjct: 691 RDTMGVRGMTVPANTKVLGLEIARPDTDLLVITENGYGKRTPVSEYPSHHRGGQGVFTIV 750

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            ++ +GN+S     ++  +   ++ +SE G   RT + D     R+ +G+R  +V+  ++
Sbjct: 751 MTAKKGNLS---AMKVVAESDELMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDK 807

Query: 838 IGALVAVFPVNDND 851
              + AV    ++D
Sbjct: 808 ---VTAVAISTEDD 818



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 106/293 (36%), Gaps = 78/293 (26%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ DE++          I+  ++  +     +      +   +  +  + L    
Sbjct: 392 LLIALDNIDEVI---------KIIRGSQTDREASERLQERFNLSEAQTAAILEMRLR--- 439

Query: 734 QVISMAIVLHAD--ADYDERICY----MKHMSAQRRLISGDTEEITSLKND---SSVEGN 784
           ++  +      D  A+  E+I Y    +   S  R +I  +  EI    N    +++ G 
Sbjct: 440 RLTGLERHKLEDELAELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTLCGE 499

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +   ++L   E+  +TV++ G+ KR     +R   R GKG++  ++ + + +  L   
Sbjct: 500 AEDIDVEDLIADEEVAVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHL--- 556

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIAS---RATK----------------------- 878
           F  + +  ++  S  G + R+ V EI  AS   R T                        
Sbjct: 557 FVASTHSYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFP 616

Query: 879 ----------------------------GVVIFSTAKDERVVSVERIRESEIV 903
                                       G++  +  +D+++++V R++  E V
Sbjct: 617 EDEYLMFGTEQGMVKKTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDV 669


>gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 874

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/884 (38%), Positives = 503/884 (56%), Gaps = 70/884 (7%)

Query: 1   MTEHIISS-----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +    +     +E+    I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MADETTPTAEGSAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC+L   A  +L D+ ++TVDF+ NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231
           VNG  GIAVGMATNIP HNL EV  G    +++P+   +     L+E I+GPDFPTGA++
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDG 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSIDAFIRHWVQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  LM                          G + + E+Q  AILE++L RL  L R
Sbjct: 420 EIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E   IL+S  +   I+ +EL ++ ++    RR+++V    DM  E
Sbjct: 454 QKIVAEHDELQAKINEYNAILASPEKQRSIVSEELAAIVEKYGDDRRSKLVPFDGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++H GYVKR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP     ARG+ + N+L+    E+I  ++   + E++    Y++ 
Sbjct: 574 FFTNKGRVYRSKAYELPDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYEAA---PYLIL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---------RDEILSVETCTQENDILLTTK 701
           ATK G V++  L D+      G IA+ L            DE++  E  + E+D+LL +K
Sbjct: 631 ATKGGLVKKTALKDYDSPRSGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISK 690

Query: 702 LGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERIC 753
             Q +RF  +   +   GR + GV+G+S  +GD+++SM++V          D  Y +R  
Sbjct: 691 KAQSIRFTATDEALRPMGRATSGVKGMSFREGDELLSMSVVRPGTFVFTATDGGYAKRTA 750

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             ++    R  +     +I   +        + E            IL ++  G   RT 
Sbjct: 751 VDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVDE---------SDEILAITLGGGVIRTR 801

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALV----AVFPVNDNDQI 853
             + R + R   G++  ++ K + +  +     A    ++ D+I
Sbjct: 802 VSEVRETGRDTMGVQLINLGKRDAVVGIARNAEAGQEADEADEI 845



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 96/250 (38%), Gaps = 22/250 (8%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-------- 573
           E +  +           ++  +  G VK+  L  Y + R G  G   + +R+        
Sbjct: 611 EKIAQVLAIRDYEAAPYLILATKGGLVKKTALKDYDSPRSG--GVIAINLRETGADGADG 668

Query: 574 -EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + +
Sbjct: 669 TADELIGAELVSAEDDLLLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLS 727

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVET 689
           +             +V  AT  G  +R  + ++    R G   K A  ++ R  ++    
Sbjct: 728 MSVVR------PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALV 781

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++IL  T  G  +R  +S +R   GR+++GV+ I+L K D V+ +A    A  + D
Sbjct: 782 VDESDEILAITLGGGVIRTRVSEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGQEAD 840

Query: 750 ERICYMKHMS 759
           E       + 
Sbjct: 841 EADEIESEIE 850



 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + D ++ ++  G + R    + R   R  KGV      +D+ V
Sbjct: 518 EEDIVVTITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLV 560


>gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367]
 gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367]
 gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis]
          Length = 844

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/847 (40%), Positives = 520/847 (61%), Gaps = 36/847 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D++    +T V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   ADQDYLGRVTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + K AR+ G+V+GKYHPHG++A+Y+++ RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPFRKSARMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  +L D+ KDT+DF+ NYDGS +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+     ++ NPD  L  LME + GPDFPTG +++G+  I+ AY TG+G+
Sbjct: 182 TNIPPHNLTEVISALHILMKNPDASLADLMEALPGPDFPTGGIVMGKAAIRRAYETGKGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R    IE+    +++IV TEIPY VNKA ++E+IAEL R+KRI  I D+ DE+DR G
Sbjct: 242 ITLRAKVDIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ F +NM+A+    P+   L  IL+ ++ F+ E
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTSFGINMLAIVNGAPKVLGLKAILQYYLEFQLE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   + A++EL+ R       
Sbjct: 362 VIRRRTEFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q++AIL++RL RLTGL R+ +  E   +   IK+ 
Sbjct: 415 -------------------FSLSDKQSQAILDMRLVRLTGLEREKVEKEYADVMANIKDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
            +IL+S+ R   II +ELL ++++    RRT + V  +L +EDED I  ED+VV+++H G
Sbjct: 456 KEILASKERQQAIIYEELLEIQNKFGDDRRTELMVGEVLSLEDEDLIAEEDVVVSLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S ++AQ RGGKG  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPTSEFKAQNRGGKGVQGMGVHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L +N  E +  ++    +    +N  + F T  G V+R  + +F 
Sbjct: 576 PEYGRTAKGIPVINLLGINNNEHVQAVINVA-NPGENDNRDLFFTTVQGTVKRTPVDEFA 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE++ V+    + ++++ T LG  V F  + +R    R++ GVRG
Sbjct: 635 NIRSNGLKAINLKEDDELIDVDIINADANMIIGTHLGYAVSFAATDVRSMG-RSATGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L + D VI  +++      +      Y K  +A    I G   +     N S+  G +
Sbjct: 694 IRLREHDYVIGASVLKPDSKVFVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKNGPL 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +     +    ++ I+ V+ KG   R S+ D   + R+  G+    ++      A+  + 
Sbjct: 754 AGLTTLD---GDEDIMLVTNKGVMIRFSASDVSETGRATLGVHLIRLADDT---AVATMA 807

Query: 846 PVNDNDQ 852
            V   D+
Sbjct: 808 KVAKEDE 814



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 15/221 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR P+  + A  R   G   + ++++D + D+ I++   +++  + LG+     
Sbjct: 620 TVQGTVKRTPVDEF-ANIRS-NGLKAINLKEDDELIDVDIINADANMIIGTHLGYAVSFA 677

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L + + +        D        V   ++ G  ++   
Sbjct: 678 ATDVRSMGRSATG---VRGIRLREHDYVIGASVLKPDSK------VFVISEKGYGKQTAA 728

Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++    R GK    ++       +  + T   + DI+L T  G  +RF  S +    GR
Sbjct: 729 AEYPIKGRGGKGIKTVNVSTKNGPLAGLTTLDGDEDIMLVTNKGVMIRFSASDVSE-TGR 787

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            ++GV  I LA    V +MA V   D   DE         A
Sbjct: 788 ATLGVHLIRLADDTAVATMAKVAKEDETADEAPVVDGETPA 828


>gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 874

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/875 (38%), Positives = 498/875 (56%), Gaps = 72/875 (8%)

Query: 1   MTEHIISSDEEEEKG---------------ITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M +    + +EE  G               +  V +  EMQ SYL YA++VI+ RA+PD+
Sbjct: 1   MADENTPTPDEEPTGPIPGADDGAAGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS
Sbjct: 61  RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWS 120

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +R+ L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP 
Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIR 221
           VL +R+PN+L+NG  GIAVGMATNIP HNL EV  G    +++P+   + L+    E I+
Sbjct: 181 VLPSRFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASNEELLDALIERIK 240

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + 
Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQN-RQCLVVTELPYQVNPDNLA 299

Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +KIA+LV++ +I  IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N
Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV
Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR S   E AR  LM                          G + + E+Q  AILE+
Sbjct: 420 IALIRRSETVEDARGGLM--------------------------GLLEIDEIQANAILEM 453

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RL  L R  +  E + L   I E   IL+S  R   I+  EL  + D+    RR+++
Sbjct: 454 QLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFGDDRRSQL 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V    DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   
Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + +
Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIRDYD 633

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695
           ++    Y+V AT+ G V++  L D+      G IA+ L        DE++  E  + ++D
Sbjct: 634 AA---PYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDELIGAELVSADDD 690

Query: 696 ILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADAD 747
           +LL +K  Q +RF  +   +   GR + GV+G+S   GD+++SM +V          D  
Sbjct: 691 LLLISKKAQSIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNVVRPGTFVFTATDGG 750

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           Y +R    ++    R  +     +I   +   S+ G +  E   E       IL ++  G
Sbjct: 751 YAKRSPVDEYRVQGRGGLGIKAAKIVEDRG--SLVGALVVEETDE-------ILAITLGG 801

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              RT   + R + R   G++  ++ K + + A+ 
Sbjct: 802 GVIRTRVNEIRQTGRDTMGVQLINLGKRDAVVAVA 836



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 14/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD---EDFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +   D   +D + 
Sbjct: 621 ESIAQILAIRDYDAAPYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDELI 680

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S   G+ + ++     
Sbjct: 681 GAELVSADDDLLLISKKAQSIRFTATDDTL-RPMGRATSGVKGMSFRDGDELLSMNVVR- 738

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R+ + ++    R G   K A  ++ R  ++      + ++
Sbjct: 739 -----PGTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 793

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+++A    A  + +E     
Sbjct: 794 ILAITLGGGVIRTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVEAAG 852

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
                Q     G  E       
Sbjct: 853 PDDEPQADPAEGTAEGTEPSAE 874


>gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 863

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VV++ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVNIAKCPKEENDEDELSDE 856


>gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 874

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/934 (36%), Positives = 497/934 (53%), Gaps = 107/934 (11%)

Query: 1   MTEHIISSDEEEEKG---------------ITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M +    + +EE  G               +  V +  EMQ SYL YA++VI+ RA+PD+
Sbjct: 1   MADENTPTPDEEPTGPIPGADDGVAGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W+
Sbjct: 61  RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWA 120

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +R+ L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP 
Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIR 221
           VL AR+PN+L+NG  GIAVGMATNIP HNL EV  G    + +P+   + L+    E I+
Sbjct: 181 VLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLAHPEASNEELLDALIERIK 240

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + 
Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQN-RQCLVVTELPYQVNPDNLA 299

Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +KIA+LV++ +I  IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N
Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV
Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR S   E AR  LM                          G + + E+Q  AILE+
Sbjct: 420 IALIRRSDTVEDARGGLM--------------------------GLLEIDEIQANAILEM 453

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RL  L R  +  E + L   I E   IL+S  R   I+  EL  + D+    RR+++
Sbjct: 454 QLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQL 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V    DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   
Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ +TH  +LFF++ G VY+ K + LP     ARG+             +  ++ F  DE
Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQH------------VANLLAFQPDE 621

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           S                                +A+K                  ++L T
Sbjct: 622 SIAQ----------------------------ILAIKDYEAAP-----------YLVLAT 642

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           K G   +  +          S GV  I+L + D      ++       D+ +  +   + 
Sbjct: 643 KGGLVKKTSLKDYD---SPRSGGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQ 699

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSYD 816
             R  + D       +  S V+G    +  + L +       F+ T ++ G+ KR+   +
Sbjct: 700 SIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDE 759

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R 
Sbjct: 760 YRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRD 817

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           T GV + +  K + VV+V R  E+    E    +
Sbjct: 818 TMGVQLINLGKRDAVVAVARNAEAGREAEEVDAD 851



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 14/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +   D+   D + 
Sbjct: 621 ESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELI 680

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S   G+ + ++     
Sbjct: 681 GAELVSADDDLLLISRKAQSIRFTATDDTL-RPMGRATSGVKGMSFRDGDELLSMNVVRT 739

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R+ + ++    R G   K A  ++ R  ++      + ++
Sbjct: 740 ------GTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 793

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+++A    A  + +E     
Sbjct: 794 ILAITLGGGVIRTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDADG 852

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
                Q     G  E       
Sbjct: 853 PDDEPQADPAEGTVEGTEPSAE 874


>gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
          Length = 820

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/891 (38%), Positives = 512/891 (57%), Gaps = 91/891 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +    + I+S SITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RRIL+ M++ G+  N
Sbjct: 2   ENISNERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAMLREGLLHN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + KCA + GEV+  YHPHG++++YD L RMAQ W +R  LI+ QGNFGSVDGD PAA 
Sbjct: 62  RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVDGDSPAAY 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  LL ++ +DTVDF  NY  S  EP VL A  PN+L+NG  GIAVGMAT
Sbjct: 122 RYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++DG  A IDNP+I +  L E+I+GPDFPTG  I+GR GI     TGRG +
Sbjct: 182 NIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRIIGRKGIDEYMNTGRGIV 241

Query: 249 VIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +RG    E    GDRE+I+++ IPY VN+A ++ KIAELV  K +  I+DLRDESD   
Sbjct: 242 RMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDLRDESDENT 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELKRG   +VI+++LY+ T+L++ F VNM+AL+  +P++  +  ++  ++  R E
Sbjct: 302 R-IVIELKRGEFPEVIISKLYKKTALEASFGVNMLALDNKRPKQMNMKEMINCYIDHRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT + L KA DRAH+L G  IA+ NLD+ ++IIR S N + A+  L ++       
Sbjct: 361 VIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQEK------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL+LRL +LTG+ R  I  E   L   I+E 
Sbjct: 414 -------------------YPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEEL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL +  +LL IIK+EL  +K++  +PR+  IV    D+   D   +E   +T+SH G+
Sbjct: 455 RSILENEYKLLSIIKEELSELKEKYTSPRKCEIVPYEGDISKADMTPKEGCFITISHKGF 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV  S +R Q+RGGKG  G    ++DFV  +F  +TH +++FF + G VY EKV+ LP
Sbjct: 515 IKRVSDSEFRTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ++G+++ N+L L + E+I  ++   E    +N   +V  TKHG V++  L+ +  
Sbjct: 575 EGSRTSKGRSINNVLQLQKEEQIAAMICVKEITEDFN---LVMCTKHGTVKKTNLAAYKN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             + G I + +D  D +++V+   +++++++ T LG+ +RF  S +R   GR + GVRG+
Sbjct: 632 FRKGGIIGINIDEGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLRE-QGRATRGVRGV 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L++ D   +M +V +  A                                         
Sbjct: 691 KLSEKDYAQAMEVVDNESA----------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L     G GKRT+  +F +  R G G+ A       +   +     V
Sbjct: 710 ------------LLICGINGQGKRTTFDEFPLQKRGGSGVIAA------KTAGVAGALAV 751

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++D+I++++  G  +R  V +I +  R TKGV   +  K + ++ + RI 
Sbjct: 752 RESDEIMMLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLLGIARIV 802


>gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG]
 gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF]
          Length = 874

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/934 (36%), Positives = 497/934 (53%), Gaps = 107/934 (11%)

Query: 1   MTEHIISSDEEEEKG---------------ITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M +    + +EE  G               +  V +  EMQ SYL YA++VI+ RA+PD+
Sbjct: 1   MADENTPTPDEEPTGPIPGADDGVSGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W+
Sbjct: 61  RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWA 120

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +R+ L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP 
Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIR 221
           VL AR+PN+L+NG  GIAVGMATNIP HNL EV  G    + +P+   + L+    E I+
Sbjct: 181 VLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLAHPEASNEELLDALIERIK 240

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + 
Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQN-RQCLVVTELPYQVNPDNLA 299

Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +KIA+LV++ +I  IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N
Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV
Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR S   E AR  LM                          G + + E+Q  AILE+
Sbjct: 420 IALIRRSDTVEDARGGLM--------------------------GLLEIDEIQANAILEM 453

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RL  L R  +  E + L   I E   IL+S  R   I+  EL  + D+    RR+++
Sbjct: 454 QLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQL 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V    DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   
Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ +TH  +LFF++ G VY+ K + LP     ARG+             +  ++ F  DE
Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQH------------VANLLAFQPDE 621

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           S                                +A+K                  ++L T
Sbjct: 622 SIAQ----------------------------ILAIKDYEAAP-----------YLVLAT 642

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           K G   +  +          S GV  I+L + D      ++       D+ +  +   + 
Sbjct: 643 KGGLVKKTSLKDYD---SPRSGGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQ 699

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSYD 816
             R  + D       +  S V+G    +  + L +       F+ T ++ G+ KR+   +
Sbjct: 700 SIRFTATDDTLRPMGRATSGVKGMSFRDGDELLSMNVVRTGTFVFTATDGGYAKRSPVDE 759

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R 
Sbjct: 760 YRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQTGRD 817

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           T GV + +  K + VV+V R  E+    E    +
Sbjct: 818 TMGVQLINLGKRDAVVAVARNAEAGREAEEVDAD 851



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 14/262 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +   D+   D + 
Sbjct: 621 ESIAQILAIKDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELI 680

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S   G+ + ++     
Sbjct: 681 GAELVSADDDLLLISRKAQSIRFTATDDTL-RPMGRATSGVKGMSFRDGDELLSMNVVRT 739

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R+ + ++    R G   K A  ++ R  ++      + ++
Sbjct: 740 ------GTFVFTATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 793

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+++A    A  + +E     
Sbjct: 794 ILAITLGGGVIRTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDADG 852

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
                Q     G  E       
Sbjct: 853 PDDEPQADPAEGTVEGTEPSAE 874


>gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
 gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
          Length = 817

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/898 (38%), Positives = 500/898 (55%), Gaps = 89/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  + + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM++G+  N 
Sbjct: 7   EPLFGKVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNT 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ GE MGKYHPHG++AIYD + RMAQD+S+R  L++GQGNFGS+DGDP AA R
Sbjct: 67  AYKKSARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL +    +L D+ +DTVD+ PN+D S QEP+ L A  PN+L+NG  GIAVGMATN
Sbjct: 127 YTEARLYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLD--ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           IP HNL EVVD    +ID     +D   ++  + GPDFPTG +ILGR GI +AY TGRG 
Sbjct: 187 IPPHNLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLILGRDGIIDAYRTGRGK 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +RG +HIE+    +  IV+TEIPY VNK  ++E IA+ V++K I  + DLRDESDR+G
Sbjct: 247 ITMRGRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREG 306

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+ R    +++L QLYR T LQS F V  +AL    P+  ++  +L  F+  R  
Sbjct: 307 LRIVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGYPKELSIEEMLNIFLNHRRS 366

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL  A+  +DEV+ +IR S   E A+  L+ +       
Sbjct: 367 VVRRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISK------- 419

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              +  SE Q +AILE+RL RLTGL R+ +  EL  L  +I+  
Sbjct: 420 -------------------LDFSEAQAQAILEMRLQRLTGLEREKLEAELAQLLSDIERY 460

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL +   L  +IK+ELL VK      R+T I++ + D+  ED I   D+VV +S  GY
Sbjct: 461 QTILGNPKVLDSVIKEELLEVKRRFGNERKTEIIDAVEDVSIEDLIPESDIVVVLSRDGY 520

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++R  L  Y  Q RGGKGR G  +++ED V  + + STH  +  F+S G V   K + +P
Sbjct: 521 LRRKDLQEYTLQGRGGKGRKGTALQEEDEVALVAVTSTHRDIYLFTSKGRVLALKGYVIP 580

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S   RGK +   ++L +GER+ T+       +     Y  F T  G  +R  LS+   
Sbjct: 581 E-SKTGRGKLINRFVALEEGERVVTM----HGRAVDGAKYAFFITLRGTAKRLDLSELEN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G+  M LD  DEI  +   + ++ +L+ T  GQ +R   S  R    R + GVRGI
Sbjct: 636 LTRAGRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPMG-RTARGVRGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D VI   +V +                                            
Sbjct: 695 RLRKNDYVIGCDVVANG------------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     ++ L +SE GFGKRT   +F + +R G G+   ++S  +  G +V  + V
Sbjct: 712 ----------RWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLS--DRTGLIVGCWSV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            + D+I+ ++ +G +IR+ V+E  +  R   G ++    + + V +   +   +  D+
Sbjct: 760 AEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTEDGEDD 817


>gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
 gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
          Length = 816

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/884 (41%), Positives = 531/884 (60%), Gaps = 89/884 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++GV     Y K ARI G+V+GKY
Sbjct: 17  KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE RL KA+  +L D
Sbjct: 77  HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L KDTVDF PNYD + +EP VL  R PN+LVNG  GIAVGMAT+IP H + E++D  + +
Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           I + D   + L+E ++GPDFPTG +I G+ GI++AY TGRG I +R   HIEKT   R+ 
Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIFGKQGIRDAYRTGRGRIKVRAKVHIEKTKT-RDV 255

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ E+P+QVNKA ++E+I+EL R+K I  IA++RDESDR G RVVIELKR A ++++LN
Sbjct: 256 IVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVLN 315

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY+ + +++ F + ++A+N  +P+ FTL  +L  F+  R+ VV+RRT + L KA+ RAH
Sbjct: 316 HLYKSSVMETTFGIILLAINNKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKARAH 375

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L GL IA+ ++DEV+ +IR S + E A+  LM+R                         
Sbjct: 376 ILEGLKIALDHIDEVIALIRSSQDVEIAKNALMER------------------------- 410

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSE+Q++AILE+RL RLTGL RD I  E  SL  EI+    IL S  +L  II  EL
Sbjct: 411 -FGLSELQSKAILEMRLQRLTGLERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNEL 469

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           L +K++  +PR T I E    ++ ED I  E +VVT+SH GYVKRV L VY  Q RGGKG
Sbjct: 470 LEIKEKFSSPRCTIIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKG 529

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           +      D+DF+   F+ +TH ++LF ++ G +Y  KV+++P     A GKA++N++ L+
Sbjct: 530 KISGNTHDDDFIQSFFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLS 589

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             E+I   +   +     ++  +VF TK+G V+R  LS++  I   G  A+ LD+ DE++
Sbjct: 590 SDEKIMATITTSD---FHDDKSLVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADDELV 646

Query: 686 SVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLH 743
           +    TQ+  ++ + T  G C+RF I+ +R    R + GV  I   AK D VI    +  
Sbjct: 647 TASIITQDVKELFVATYQGMCIRFDINDVREIG-RAARGVTAIRFKAKEDSVIGATTI-- 703

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                             + +   +LTV
Sbjct: 704 --------------------------------------------------RSENDKLLTV 713

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTL 862
           SE+G GK+T +  +R+ +R GKG+    ++   + G LV++  VND N  +++++  G +
Sbjct: 714 SEQGIGKQTLAGAYRLQSRGGKGVIVMKLTA--KTGKLVSIINVNDENMDLMVLTTSGKM 771

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           IRV    IR A R T GV I + A  E+V       + E   E 
Sbjct: 772 IRVDTEAIREAGRNTSGVKIVNVA-GEKVAYASSCPKEEKEPED 814


>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
 gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
 gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
          Length = 808

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/843 (41%), Positives = 525/843 (62%), Gaps = 37/843 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FNLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGNDE---NEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR    R ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMG-RTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D V+SM +     D     +  + K  + +         +     N S   G I    
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTI---V 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N 
Sbjct: 749 GADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINI 805

Query: 850 NDQ 852
            ++
Sbjct: 806 EEE 808



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 103/249 (41%), Gaps = 36/249 (14%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ D ++S         ++  +K GQ  +  +          +  +  + L    
Sbjct: 381 LKIALDNIDAVIS---------LIRASKTGQEAKLGLIEKFNLTEIQAQAILDMRLQRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +         D  ++I  +K + A  RL+    ++  ++  ++  +   +E 
Sbjct: 432 GLERDKIEA------EYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERRTEI 485

Query: 789 RCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  E       L   E+  +T++  G+ KR  S  ++   R G+GI A    + + +  L
Sbjct: 486 RHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHL 545

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V       + +++  ++KG + ++   EI    R  KG   V +   + DE++ ++  I 
Sbjct: 546 VTTTT---HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI- 601

Query: 899 ESEIVDEAE 907
             +  DE E
Sbjct: 602 --DGNDENE 608


>gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
 gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/923 (37%), Positives = 499/923 (54%), Gaps = 98/923 (10%)

Query: 1   MTEHIISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M + I  +  E      + +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADDITPATPEAGGIIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+   + L    ME I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +VA + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   +
Sbjct: 360 LSLDAFIRHWVAHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVD 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM+                           + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARTGLME--------------------------LLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E  +IL+S  R  GI+  EL ++ ++    R+T +V    DM  ED
Sbjct: 454 KIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAIVEKYGDDRKTMLVPYDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTVS  GYVKR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVSRGGYVKRTKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+             +  ++ F  DE+          
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQH------------VANLLAFQPDEAI--------- 612

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                                          EIL++        ++L TK G   +  + 
Sbjct: 613 ------------------------------AEILAIRDYDAAPYLVLATKAGLVKKTSLK 642

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                    S GV  I+L + +      ++       D  +  +   +   R  + D   
Sbjct: 643 DYD---SPRSGGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSIRFTASDDTL 699

Query: 772 ITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
               +  S V+G    E  + L +       F+ T ++ G+ KRT   ++R+  R G GI
Sbjct: 700 RPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGI 759

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +A  + +  + G+LV    V + D+I+ ++  G +IR  VN +R   R T GV + +  K
Sbjct: 760 KAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGK 817

Query: 888 DERVVSVERIRESEIVDEAESTE 910
            + VV + R  E+    EAE  E
Sbjct: 818 RDAVVGIARNAEAGR--EAEEVE 838



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 108/265 (40%), Gaps = 18/265 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E + ++           +V  +  G VK+  L  Y + R GG     +  R++   D + 
Sbjct: 610 EAIAEILAIRDYDAAPYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREREDGSDDELI 669

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS  + +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 670 GAELVSADSDLLLISKKAQSIRFTASDDTL-RPMGRATSGVKGMSFREGDELLSMNVVR- 727

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 728 -----PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 782

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 783 ILAITLSGGVIRTRVNGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEE----V 837

Query: 756 KHMSAQRRLISGDTEEITSLKNDSS 780
           +   A    + G  E I + + ++ 
Sbjct: 838 EGDVADDETVEGAAETIGTDEGEAP 862


>gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 817

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/892 (37%), Positives = 519/892 (58%), Gaps = 84/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM++SY+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM Q+G+  N  Y
Sbjct: 3   EGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y+ + RMAQ W+LR  LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D S +EP VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 123 EVRMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +    A I+N  I ++ +ME I+ PDFPTG +I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIYGYEGVKKAFYTGRGRIVLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+E+    R+ I+V EIPYQVNKA M+ +  EL+RE ++  I  +RDESDR G R+V
Sbjct: 243 AKVHLEEIQ-GRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+  +  ++LN L++YTSLQ+ F+VN +AL   KP +  +  +++ FV  R++V++R
Sbjct: 302 YLLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVKGKPVQLNIKDLIQHFVDHRQDVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L K +DR H L G    + +LD+++ +I+ S +   A   L++            
Sbjct: 362 RTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIKM----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+R+IL++RL  LT L    I+ E   L  +I    ++L
Sbjct: 411 ---------------FKLSENQSRSILDMRLQNLTSLELKKIKKEYEELVKKIAYLKNVL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              S  + IIK+ELL ++D+    RRT+I     ++  ED I  E +V+T+SH GY+KR 
Sbjct: 456 IQHSIRMQIIKKELLDIQDKYQDKRRTQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G  G   R+ DF   L I + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLSEYKRQGRGGIGNRGASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++ L   +++   +   +  ++    N YV+  T+ G +++  L ++ +  
Sbjct: 576 ISKGRAIQNMIHLQPDDKVNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+ +   D +L        + + +  K G+ +RF    +R   GRNS GVRGI+L
Sbjct: 636 KDGINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRA-TGRNSSGVRGINL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +   D VI M  V   +  Y                                        
Sbjct: 695 SISEDTVIGMICVEGQEKGY---------------------------------------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L VSEKGFGKRT+  D+RI+NR GKGI+  ++++  + G+L+++  V 
Sbjct: 715 -----------LLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQ--KTGSLISIKHVT 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + D ++++   G +IR+ V++IR+  R T+GV + +  + + +  VE++ ++
Sbjct: 762 NQDDLMIIKKSGIIIRISVSDIRVMGRDTQGVRLINLKEKDEIADVEKVSQT 813


>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
 gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
 gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 808

 Score =  702 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/843 (41%), Positives = 525/843 (62%), Gaps = 37/843 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGNDE---NEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR    R ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMG-RTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D V+SM +     D     +  + K  + +         +     N S   G I    
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTI---V 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N 
Sbjct: 749 GADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINI 805

Query: 850 NDQ 852
            ++
Sbjct: 806 EEE 808



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 103/249 (41%), Gaps = 36/249 (14%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ D ++S         ++  +K GQ  +  +          +  +  + L    
Sbjct: 381 LKIALDNIDAVIS---------LIRASKTGQEAKLGLIEKFKLTEIQAQAILDMRLQRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +         D  ++I  +K + A  RL+    ++  ++  ++  +   +E 
Sbjct: 432 GLERDKIEA------EYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERRTEI 485

Query: 789 RCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  E       L   E+  +T++  G+ KR  S  ++   R G+GI A    + + +  L
Sbjct: 486 RHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHL 545

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V       + +++  ++KG + ++   EI    R  KG   V +   + DE++ ++  I 
Sbjct: 546 VTTTT---HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI- 601

Query: 899 ESEIVDEAE 907
             +  DE E
Sbjct: 602 --DGNDENE 608


>gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
 gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
          Length = 831

 Score =  702 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/881 (42%), Positives = 529/881 (60%), Gaps = 89/881 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYVKC 74
           I  V I D ++ SYL Y+++VI+GRA+P+ RDGLKPVHRRIL+ M   +G+  N KY KC
Sbjct: 10  IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMG YHPHG+ AIYDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE +
Sbjct: 70  AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ KDTVDF PNYDGS +EP +L  R+PN+LVNG  GIAVGMAT+IP H 
Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  +  I+NP  +++ ++ +I GPDFPTG +I GR GI  AY TGRG I IR   
Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGIIHGRQGIIEAYKTGRGRIKIRAKV 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EKT   ++ IVV EIPYQVNKA + E+I  L ++K +  IA++RDESD+ G R+VIEL
Sbjct: 250 HVEKTKT-KDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIEL 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN LY+ +++++ F + ++A+ G +P+ FTL+ +L  F++ R+ +V+RR  
Sbjct: 309 KREAMSEIVLNHLYKSSAMETTFGIILLAIEGREPKIFTLLELLDIFISHRKTIVIRRII 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR R H+L G  IA+ N+DE+V +IR S NPE A+ ELM R              
Sbjct: 369 FELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q++AILE+RL RLTGL RD I NE   L   I E   IL S 
Sbjct: 415 ------------FSLTEIQSKAILEMRLQRLTGLERDKIENEYRELVALIAELESILRSE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++ G+IK+ELL V+ +  +PRRT I E    ++ ED I  E +VVT+SH GYVKRV L 
Sbjct: 463 DKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIEDLIPNEAVVVTMSHRGYVKRVLLK 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGGKG+      D+DF+   F+ +TH +++F ++ G +Y  KV+R+P     A 
Sbjct: 523 TYEKQHRGGKGKISGNTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAI 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N++ L  GE+I T +   +      +  +VF TK+G V+R  LS++  I  +G  
Sbjct: 583 GKAVVNLIGLQDGEKIMTTITTSDFNE---DKSLVFFTKNGIVKRTNLSEYKNIRNNGVR 639

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           A+ LD  DE++S         ++ + TK GQC+RF   +IR    R + GV GI      
Sbjct: 640 AINLDEDDELISASIIDSSVKELFIATKEGQCIRFAADSIRDIG-RVARGVIGIKFKVAN 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI+   +                                                   
Sbjct: 699 DSVIAATTI--------------------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
            K  E  +L++SE G GK+T +  +   NR GKG+ A  ++  N+ G LV+V  VND N 
Sbjct: 708 -KGDEDKLLSISELGIGKQTLAGSYSTINRGGKGVIAMKLT--NKTGKLVSVLSVNDSNM 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            +++++  G +IRVP+  IR A R T GV I S    ++V 
Sbjct: 765 DLMVLTTSGKMIRVPLESIREAGRNTSGVKIVSLGNKDKVA 805


>gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  702 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/896 (39%), Positives = 546/896 (60%), Gaps = 49/896 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++ 
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDE 852


>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
 gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
 gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
 gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
 gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
          Length = 808

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/843 (41%), Positives = 525/843 (62%), Gaps = 37/843 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGNDE---NEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR    R ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMG-RTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D V+SM +     D     +  + K  + +         +     N S   G I    
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTI---V 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N 
Sbjct: 749 GADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINI 805

Query: 850 NDQ 852
            ++
Sbjct: 806 EEE 808



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 102/249 (40%), Gaps = 36/249 (14%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ D ++S         ++  +K GQ  +  +          +  +  + L    
Sbjct: 381 LKIALDNIDAVIS---------LIRASKTGQEAKIGLIEKFKLTEIQAQAILDMRLQRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +         D  ++I  +K + A  RL+    +   ++  ++  +   +E 
Sbjct: 432 GLERDKIEA------EYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDERRTEI 485

Query: 789 RCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  E       L   E+  +T++  G+ KR  S  ++   R G+GI A    + + +  L
Sbjct: 486 RHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHL 545

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V       + +++  ++KG + ++   EI    R  KG   V +   + DE++ ++  I 
Sbjct: 546 VTTTT---HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI- 601

Query: 899 ESEIVDEAE 907
             +  DE E
Sbjct: 602 --DGNDENE 608


>gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
 gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
          Length = 864

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/929 (37%), Positives = 503/929 (54%), Gaps = 104/929 (11%)

Query: 1   MTEHIISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +       EE     + +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADQNTPVTPEESGETVQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ +DTVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+   + L+    E I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 IGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   +
Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVD 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                            + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARTGLMD--------------------------LLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I+E  +IL+S  R  GI+  EL ++ ++    R+T +V    DM  ED
Sbjct: 454 KIIQEHDELQAKIREYNEILASPVRQRGIVSAELAAIVEKFGDDRKTMLVPYDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTVS  GYVKR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVSRGGYVKRTKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+             +  ++ F  DE+          
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQH------------VANLLAFQPDEAI--------- 612

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                                          EIL++        ++L TK G   + P+ 
Sbjct: 613 ------------------------------AEILAIRDYEATPYLVLATKGGLVKKTPLK 642

Query: 712 AIRVFAGRNSVGVRGISLAK-----GDQVISMAIVLHADADY-DERICYMKHMSAQRRLI 765
                    S GV  I+L +      D++I   +V   D      +       +A    +
Sbjct: 643 DYD---SPRSGGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSIRFTATDEAL 699

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                  + +K  S  EG   E     +     F+ T ++ G+ KRT+  ++R+  R G 
Sbjct: 700 RPMGRATSGVKGMSFREG--DELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGL 757

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + + 
Sbjct: 758 GIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINL 815

Query: 886 AKDERVVSVERI----RESEIVDEAESTE 910
            K + VV + R     RE+E VD  E+ +
Sbjct: 816 GKRDAVVGIARNAEAGREAEEVDGDEAVD 844



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 105/263 (39%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E + ++           +V  +  G VK+ PL  Y + R GG     +  +++   D + 
Sbjct: 610 EAIAEILAIRDYEATPYLVLATKGGLVKKTPLKDYDSPRSGGVIAINLREKEDGSDDELI 669

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS +  +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 670 GAELVSPNDDILLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLSMNVVR- 727

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 728 -----PGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 782

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+ +A    A  + +E     
Sbjct: 783 ILAITLSGGVIRTRVNEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDE 841

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
                     +  T+E  +  ++
Sbjct: 842 AVDETAEGAATTGTDEGEAPSSE 864


>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
 gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
          Length = 808

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/843 (41%), Positives = 525/843 (62%), Gaps = 37/843 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FNLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGNDE---NEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR    R ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMG-RTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D V+SM +     D     +  + K  + +         +     N S   G I    
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTI---V 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N 
Sbjct: 749 GADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINI 805

Query: 850 NDQ 852
            ++
Sbjct: 806 EEE 808



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 103/249 (41%), Gaps = 36/249 (14%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ D ++S         ++  +K GQ  +  +          +  +  + L    
Sbjct: 381 LKIALDNIDAVIS---------LIRASKTGQEAKLGLIEKFNLTEIQAQAILDMRLQRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +         D  ++I  +K + A  RL+    ++  ++  ++  +   +E 
Sbjct: 432 GLERDKIEA------EYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERRTEI 485

Query: 789 RCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  E       L   E+  +T++  G+ KR  S  ++   R G+GI A    + + +  L
Sbjct: 486 RHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHL 545

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V       + +++  ++KG + ++   EI    R  KG   V +   + DE++ ++  I 
Sbjct: 546 VTTTT---HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI- 601

Query: 899 ESEIVDEAE 907
             +  DE E
Sbjct: 602 --DGNDENE 608


>gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029]
 gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
          Length = 834

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/900 (37%), Positives = 524/900 (58%), Gaps = 91/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+ +    K+
Sbjct: 4   KDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++AY TGRG I +R
Sbjct: 184 PHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSAYTTGRGKIKVR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E     RE I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+ 
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++           
Sbjct: 364 RRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +E Q  AILELRL +LTGL  + I+ E   L  +I     +
Sbjct: 413 ---------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           LS    +  II+ EL  +       RRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++     + E  ++L T LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V+S  IV    +                                       
Sbjct: 694 VSLKNEEDKVVSCQIVTENQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           PV D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  DE
Sbjct: 759 PVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDE 818


>gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
          Length = 826

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/885 (40%), Positives = 539/885 (60%), Gaps = 89/885 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y
Sbjct: 8   ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYT
Sbjct: 68  KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+IP
Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H + E++D  + V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 188 PHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RVV
Sbjct: 248 AKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++R
Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R           
Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   IL
Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKRV
Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S 
Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A GKA++N++SL   E+I   +   +     +   + F TK+G V+R  LS+F      
Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRTNLSEFESNRSC 637

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R + GV GI L 
Sbjct: 638 GIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREIG-RTTRGVIGIRLN 696

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+   ++                                                 
Sbjct: 697 ENDFVVGAVVISD----------------------------------------------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+D 
Sbjct: 710 -----DGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDDE 762

Query: 851 D-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V
Sbjct: 763 NLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYV 805



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   +D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S    + ++ +      ++L   E  ++++S KG+ KR     +   NR GKG  +    
Sbjct: 482 SSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
          Length = 808

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/843 (41%), Positives = 525/843 (62%), Gaps = 37/843 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGNDE---NEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR    R ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMG-RTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D V+SM +     D     +  + K  + +         +     N S   G I    
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTI---V 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N 
Sbjct: 749 GADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINI 805

Query: 850 NDQ 852
            ++
Sbjct: 806 EEE 808



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 103/249 (41%), Gaps = 36/249 (14%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ D ++S         ++  +K GQ  +  +          +  +  + L    
Sbjct: 381 LKIALDNIDAVIS---------LIRASKTGQEAKLGLIEKFKLTEIQAQAILDMRLQRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +         D  ++I  +K + A  RL+    ++  ++  ++  +   +E 
Sbjct: 432 GLERDKIEA------EYEDLIKKINRLKEILADERLLLNVIKDEITIIKENYSDERRTEI 485

Query: 789 RCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  E       L   E+  +T++  G+ KR  S  ++   R G+GI A    + + +  L
Sbjct: 486 RHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHL 545

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V       + +++  ++KG + ++   EI    R  KG   V +   + DE++ ++  I 
Sbjct: 546 VTTTT---HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI- 601

Query: 899 ESEIVDEAE 907
             +  DE E
Sbjct: 602 --DGNDENE 608


>gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 869

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/865 (39%), Positives = 500/865 (57%), Gaps = 62/865 (7%)

Query: 1   MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +    +  E++       +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MADENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC++   +  ++ D+ +DTVDF+ NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV +G    + NP+   + L+    + I+GPDFPTGA++
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV+E 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIADLVKEA 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 RIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  LM                            + + E+Q  AILE++L RL  L R
Sbjct: 420 EIARGGLMD--------------------------LLTIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E   IL+S  R   II +EL ++ ++    RRT+++    DM  E
Sbjct: 454 QKIIQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYGDDRRTKLIPFDGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP    +ARG+ + N+L+    E+I  I+   + E++    Y+V 
Sbjct: 574 FFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAA---PYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705
           ATK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q 
Sbjct: 631 ATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQS 690

Query: 706 VRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKH 757
           +RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    ++
Sbjct: 691 IRFTATDESLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTNVDEY 750

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               R  +     +I   +   S+ G +  E   E       IL ++  G   RT   + 
Sbjct: 751 RVQGRGGLGIKAAKIVEDRG--SLVGALVVEESDE-------ILAITLSGGVIRTRVNEV 801

Query: 818 RISNRSGKGIRATDVSKINEIGALV 842
           R + R   G++  ++ K + +  + 
Sbjct: 802 RETGRDTMGVQLINLGKRDAVVGIA 826



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 105/267 (39%), Gaps = 14/267 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+ PL  Y + R GG     +   ++   D + 
Sbjct: 611 EQIAQILAIRDYEAAPYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELI 670

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 671 GAELVSADDDLLLISKKAQSIRFTATDESL-RPMGRATSGVKGMSFREGDELLSMNVVR- 728

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 729 -----PGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDE 783

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E     
Sbjct: 784 ILAITLSGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEDES 842

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVE 782
           + +S      + +  E T    D + E
Sbjct: 843 ETVSEAAEGAASEAAEGTPPPADETEE 869


>gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
 gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
          Length = 829

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/836 (43%), Positives = 509/836 (60%), Gaps = 84/836 (10%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD 
Sbjct: 1   MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAV
Sbjct: 61  AAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TG
Sbjct: 121 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+ 
Sbjct: 181 RGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETS 240

Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++ 
Sbjct: 241 LRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE 300

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR   
Sbjct: 301 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR--- 357

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL++RL RLTGL RD I  E N L   
Sbjct: 358 -----------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNY 394

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTV 542
           I E   IL+    LL +++ EL  ++D     RRT I + G  D+EDED I  E +V+T+
Sbjct: 395 ISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITL 454

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH  Y+KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K
Sbjct: 455 SHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLK 514

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S Q++G  ++N + L   E I+T++   + ES  N  ++VFATK G V+R+ L
Sbjct: 515 GYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSAL 572

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F +INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R    R + 
Sbjct: 573 SNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLG-RTAT 631

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI+L +GD+V+ + +      D                                   
Sbjct: 632 GVKGITLREGDEVVGLDVAHANSVD----------------------------------- 656

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V
Sbjct: 657 ----------------EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVV 698

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +  V   + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 699 CITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 754



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E  ++  +      R P+S  R    R   GV+G++  + D V  +  +   D   
Sbjct: 444 LIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVL 502

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+  +K               + +     + E   +    ++L+ ++ F++  +
Sbjct: 503 FFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFAT 562

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G  KR++  +F   NR+GK   A    + +E   L+AV   +  + I++ +   +LIR
Sbjct: 563 KRGVVKRSALSNFSRINRNGK--IAISFREDDE---LIAVRLTSGQEDILIGTSHASLIR 617

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            P + +R   R   GV   +  + + VV ++    + + +    TE
Sbjct: 618 FPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDEVLVVTE 663



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I+  ++ ++D +    ++ +V  +  G VKR  LS +    R GK    +  R++D + 
Sbjct: 540 EIISTMIAVKDLES--EDNFLVFATKRGVVKRSALSNFSRINRNGK--IAISFREDDELI 595

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + + S    +L  +S   + +     L      A G   +  ++L +G+ +  +    +
Sbjct: 596 AVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGL----D 648

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND 695
              + +   V+  T++G  +R  ++D+   NR GK    A   +    ++ + T T E D
Sbjct: 649 VAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEED 708

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERIC 753
           +++ T  G  +R  ++ I     R + GVR I L     V ++A V     + + DE+  
Sbjct: 709 LMIVTNAGVIIRLDVADISQNG-RAAQGVRLIRLGDDQFVSTVAKVKEDADEENEDEQST 767

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
             +  + Q+R    + E   +  +   ++  +++E  +
Sbjct: 768 VSEDGTEQQREAVVNDETPGNAIHTEVIDSEVNDEDGR 805


>gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 862

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/900 (39%), Positives = 548/900 (60%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ L+  DE+++     ++ D +  +   + +                     +L 
Sbjct: 636 IGVRAINLNENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             +   +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESASTQGKMLFAVTKKGMCIKFPLVKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL+VS KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSVSAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum]
 gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/891 (41%), Positives = 526/891 (59%), Gaps = 86/891 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV     Y K ARI 
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL+  
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ +L ++TV+F PNYD S QEP VL AR P +L+NG  GIAVGMATNIP HN+ E+
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A  TGRGSIV+RGV+ IE+
Sbjct: 190 IDGLLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVAEIEE 249

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  DR  I++ EIPYQVNKA ++E+IAELVRE  +  IAD+RDESDR G RVVI+LKR 
Sbjct: 250 STRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+  V+LN+LY  T LQ+ F  N VAL   +P   +L   L  F++FR++VV RRT + L
Sbjct: 310 ANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALVHFLSFRQDVVTRRTLFRL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R H+L GL  A+  +D+++ +IR S +P+ AR  L+++                 
Sbjct: 370 RKARERFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q RAIL++RL RLT L RD I  E   + + I+   DIL SRSRL
Sbjct: 413 ---------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRLLIRGLEDILGSRSRL 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++E  ++++     RRTRIV    ++  E  I  +   +T+++ GY+KRV    Y 
Sbjct: 464 MAVIREEFTALRENYGDARRTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYP 523

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKGRSGV ++++D V      + H ++LFF+ +G VY+ K   +P     ARGK 
Sbjct: 524 TQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKP 583

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +   L L   E++T ++     E    +  +VF T +G ++R  LS +  I +SG IA+ 
Sbjct: 584 VRGFLPLAPEEKVTRMLNVASFE---GDRSLVFVTVNGIIKRTALSAYSSIRQSGIIALT 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D +  V     ++ +L+ T+ G  + FPI  +    GR + GVR I L + D+V  
Sbjct: 641 LREGDRLAQVLVADADSHVLVATRRGMAILFPIHEVTE-QGRTASGVRAIRLREDDRVAD 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             IV   D                                                    
Sbjct: 700 AEIVTETDP--------------------------------------------------- 708

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +  V+EKG+GKR     FR  +R G G++ +  ++  +IGA+V++    D D + +++
Sbjct: 709 --VAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAE--KIGAVVSLVKAGDTDDLTIIT 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            KG   RV  NE+R   R+ +GV++   A D+ +VS       ++  E ES
Sbjct: 765 SKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVSAVVSPPRDVEGEQES 815


>gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 827

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/914 (37%), Positives = 510/914 (55%), Gaps = 91/914 (9%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M+  +  +D  +     +T+  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+
Sbjct: 1   MSSDVPDADPSDVGAAQVTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + GV  N  + K + + GE MG YHPHG++AIYD LARMAQD+S+R  L++GQGNFG
Sbjct: 61  AMHEAGVTSNSAHRKSSSVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGDPPAA RYTE R+   A  LL D+ +DTVDF  NYD   +EP VL A +PN+LVNG
Sbjct: 121 SVDGDPPAAMRYTEARMSPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+TNIP HNLGEV+D  VA+I  PD  ++ LME ++GPDFPTGA I+GR  + 
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGANIVGRNAVH 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRG + +R    +++  G   +IV++E+P+Q NK+ ++E+IAE V +  I  I D
Sbjct: 241 KAYKTGRGRVRVRAEFEVDEEEG---RIVISELPFQQNKSRLVERIAEDVNDGSIEGIRD 297

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G RVV+ELKR A A+V+ NQL   + L+  F V  +AL    P+   L   L
Sbjct: 298 LRDESDRDGIRVVVELKRDAMAEVVKNQLLE-SHLERTFGVINLALVDGSPQVLDLKQTL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R +VV RR+++ L +  DRAH+L G   A+  +D+VV  I+ S + + A+  L 
Sbjct: 357 EYYVEHRRDVVRRRSEHELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAAL- 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                    +     SE Q   I+ ++L  LT +   +I +E  
Sbjct: 416 -------------------------EADYEFSEAQAEHIVRMQLGSLTSMETQEIESEYE 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +   I+    IL     L  +I  EL  +KDE D  RRT  +E + D+  ED I  E+ 
Sbjct: 451 DVTARIERLETILGDPDELDQVIITELREIKDEYDDERRTSFIEDVGDVTHEDLIPEEEC 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VV +S   Y+KR+ L  +RAQ RGGKG  G  +++ D V+ +F  ++H  +L F++ G +
Sbjct: 511 VVVMSEDDYIKRMSLDTFRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQI 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P  S  ARGK+ +N++ L+ GE I  ++   + +   ++ ++   T+ G ++
Sbjct: 571 YELKTYEIPEMSRTARGKSAVNLIDLDDGEEIEAVVNTDDLD---DDEFLTMVTRDGYIK 627

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  +  F  I  +G  A++L+  DE++ VE      DI++ ++ G  +RF  S  R    
Sbjct: 628 RTAVDQFGNIRSTGIRAIRLEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAMG- 686

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L +GD V  +A +                                     
Sbjct: 687 RTARGVIGIDLREGDAVAGVAAIDED---------------------------------- 712

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +  ++LTV+E G+GKR+   ++R+ +R+GKG+   D+   +  
Sbjct: 713 -----------------RHNWVLTVTENGYGKRSDLDEYRLQSRNGKGL--IDIKTGDRN 753

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G  VA+  V   D ++ +SD G ++R  V EI    R TKGV++ +   D+ V SV+ + 
Sbjct: 754 GEAVAIEAVTYGDHLLAMSDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASVDIVS 813

Query: 899 ES--EIVDEAESTE 910
           ES      + E  E
Sbjct: 814 ESVHGGETDVEGDE 827


>gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/896 (39%), Positives = 546/896 (60%), Gaps = 49/896 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++ 
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDE 852


>gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 812

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/891 (38%), Positives = 504/891 (56%), Gaps = 89/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +E++ SYL YA++VI+GRA+PD +DGLKPV RRIL+ MM++G+  N+ Y K 
Sbjct: 9   KVLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRSNQPYRKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GE MGKYHPHG+AAIYDA+ RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTE R
Sbjct: 69  ARIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEAR 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      +L D+ +DTVD+ PN+D + QEP+VL +  PN+LVNG  GIAVGMATNIP HN
Sbjct: 129 LSPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMATNIPPHN 188

Query: 195 LGEVVDGCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVVD    +ID   D++L  ++E++ GPDFPTG  I GR GI NAY TGRG IV+RG 
Sbjct: 189 LSEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTITGREGIINAYRTGRGKIVLRGR 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  ++VTEIPY VNK  ++E IA  V+E  +  IADLRDESDR G RVVIE
Sbjct: 249 VSIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRDGIRVVIE 308

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+R A   ++L QLY  T LQ+ F V  +AL    P    LI +LK F+  R +VV RRT
Sbjct: 309 LQRDADPHLVLKQLYSRTPLQTTFGVINLALVDGVPRELGLIELLKIFLDHRRDVVRRRT 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA +RAH++ GL  A+  +DE++ +I+ S + + AR  LM               
Sbjct: 369 NYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLMDN------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q +AIL++RL RLT L R  +  EL  L  +I+    IL +
Sbjct: 416 -------------FGFTELQAQAILDMRLQRLTNLERSKLEEELRHLLKDIEMYHSILEN 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L  ++K+EL  +K +    R+T IV+ L+++ D++ I  ED+VV +S  GY++R  L
Sbjct: 463 PSVLDSVVKEELTELKRQYGDARKTEIVDELVEVADDELIPEEDIVVVLSKDGYLRRASL 522

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y  Q RGGKG  G+  +D D V      +TH  +  F+S G V+  K + LP      
Sbjct: 523 GDYHLQGRGGKGIKGLKQKD-DEVEMFAATTTHHDIFLFTSKGRVFAIKGYLLPE-PKNG 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GK + +  +L + ER+  I    ++++     +V FAT+ G  +R  +S+   + R+G+
Sbjct: 581 KGKHVSSFFTLEENERVVAI----KEDTMHGARFVFFATERGIAKRLDVSELANLTRAGR 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + LD  D I  V   + E+++L  +  GQ +R      R    R + GVR I L++ D
Sbjct: 637 RVITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPMG-RQARGVRAIRLSESD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++                                                       E 
Sbjct: 696 VLVGC-----------------------------------------------------EP 702

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   IL +SEKG GKRTS  +F + +R G G+RA  +S  +  G+LV  + V ++D++
Sbjct: 703 LQEGMAILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLS--SRTGSLVGAWSVTEDDEV 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++V+ KG + R+ V  + + SR   G ++    + + V  +  +R+  + +
Sbjct: 761 MIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRDDAMEE 811


>gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 832

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/905 (39%), Positives = 532/905 (58%), Gaps = 88/905 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  I ++E E  GI + ++   M++S+L Y+++VI+ RA+PD+RDGLKPV+RRIL+ M +
Sbjct: 11  EPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYAMNK 70

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G       VK A+I GEVMG YHPHG+++IYDA+  +AQ W +R  L+EGQGNFGS+DG
Sbjct: 71  NGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGSMDG 130

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+ K    LL D+ K+TVDFR N+DG+ +EPVVL +  PN+L+NG  GI
Sbjct: 131 DEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQMGI 190

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+D  VA IDNP+I LD L+  I+GPDFPTGA + G   ++ AY 
Sbjct: 191 AVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGGAPMRQAYE 250

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ IR V+ IE+    R  I+VTE+PY ++K   ++K+ ELV  K+I  IAD RDE
Sbjct: 251 TGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIADARDE 310

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAF 361
           S R   RVV+ELK+ A    ILNQLY+ T LQ+ F  N++AL    +P+   L  IL  F
Sbjct: 311 SARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKEILAEF 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R+ V+ RRT++ L KA++RAH+L GL IA+ ++DEV++ IR S +   A + LM+R 
Sbjct: 371 IKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYD--DADKRLMER- 427

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+Q  AIL ++L RL GL RD I +EL  L 
Sbjct: 428 -------------------------FGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLH 462

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVV 540
             IK+   IL+S   +L ++K ELL++KD+    RR++I+   L    DE+ I  E+ V+
Sbjct: 463 ELIKKLEAILASEQEILNVVKTELLAMKDKYGDERRSKIINHELGKFSDEELIPEEESVI 522

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   Y+KR  +S YR Q RGGKG+ G+  ++ED +  +   STH  +LFF+++G +++
Sbjct: 523 LLTSENYIKRTLVSDYRRQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFR 582

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  A+G A +N+L L   E+IT I+    ++++ +  Y+  AT+ G V++ 
Sbjct: 583 LKAYEVPAASLSAKGVAAVNLLQLQPEEKITAII--KHEKNANDKGYLFMATQKGTVKKT 640

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            + D+  +  +G IA+KLD  DE+  ++  + +ND++++T  GQ +RF     R    R+
Sbjct: 641 PVKDYANVRTNGLIAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPMG-RS 699

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L   D V+ M IV   D                                   
Sbjct: 700 ARGVRGVRLRPNDSVVGMDIVTGDD----------------------------------- 724

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +L VSEKGFGKRT   +F    R G GI+A  V+   + G 
Sbjct: 725 -----------------QTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTA--KTGP 765

Query: 841 LVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++V  ++    + +LVS  G  IR+ +++I++  R T+GV I   +  + V S+  + +
Sbjct: 766 IISVQTIDPEVTEALLVSQNGQTIRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSIGLMAD 825

Query: 900 SEIVD 904
               +
Sbjct: 826 RPQDE 830


>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
 gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
          Length = 838

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/847 (39%), Positives = 518/847 (61%), Gaps = 36/847 (4%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++  I+ + +    G+ +  +  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MSDKEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G+  NK + K AR  G+V+GKYHPHG++A+YDA+ R+AQD+++R+ L++G GNFGS
Sbjct: 61  MYDSGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE RL K A  LL DLGK+TVD+ PNYD S QEP VL AR+PN+LVNG 
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    ++DNPD+  + LME++ GPDFPTG VI GR GI +
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVIRGREGIIS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ I+    I++    +  I++TEIPYQVN++ +++KI ELVR+K++ +I+++
Sbjct: 241 AYETGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNV 300

Query: 300 RDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR     ++IELK+ A   V+LN+L+++T LQ  + V M+AL    P   +L  IL
Sbjct: 301 HDGADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVDGVPRTLSLREIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++  +E+V+ RRT++ L KA  RAH++ GL IA+ ++DEV+ IIR S   + A  +L 
Sbjct: 361 HYYILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLS 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            LSE Q  AIL+++L RLTGL R+ ++ EL 
Sbjct: 421 ER--------------------------FGLSEAQCTAILQMQLRRLTGLEREKLQEELA 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I     IL+    +  +IK+EL  +K   +TPRRTRI     D++ ED I  E+M
Sbjct: 455 ELKEKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDVEDLIADEEM 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+++ GY+KR+P++ YR Q+RGGKG  GV +++ DFV  LFI STH  +LFFSS G V
Sbjct: 515 VVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y++KV+ +P     ARG A++N+L L++GE I   +   E      + +++F TK G V+
Sbjct: 575 YRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATKE---FPEDEFLMFGTKEGMVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  +S + +  + G IA+ L   DE+++V+       + + +  G+ + +  S +R    
Sbjct: 632 KTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAMG- 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R+++GVRG+++  G  V+ + I     +        Y K    +   +     +      
Sbjct: 691 RDTMGVRGMTVPDGVHVLGLEIASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGVFTIT 750

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            ++ +G ++     ++   E  ++ +SE+G   RTS  D     R+ +G++  +V   + 
Sbjct: 751 MTAKKGQLA---AMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKDR 807

Query: 838 IGALVAV 844
           + A+   
Sbjct: 808 VSAVAIA 814



 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 103/310 (33%), Gaps = 58/310 (18%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIA--MKLDSRDEILSVETCTQENDILLTTK 701
           +   VV  T  G ++R  ++ + Q  R GK    + L   D +  +   +  N +L  + 
Sbjct: 511 DEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSS 570

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  R  +  I   AGR++ G   ++L K D+  S+   +      ++           
Sbjct: 571 AGKVYRKKVFEI-PEAGRHARGTAVVNLLKLDKGESIVAAIATKEFPEDEFLMFGTKEGM 629

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-ILTVSEKGFGKRTSSYDFRIS 820
            +  +    + T      ++     +E     ++K    +  VS  G        + R  
Sbjct: 630 VKKTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAM 689

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK--------------------- 859
            R   G+R   V    +   ++ +   +   +I +++++                     
Sbjct: 690 GRDTMGVRGMTV---PDGVHVLGLEIASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGV 746

Query: 860 ------------------------------GTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                                         G ++R  V++I    RAT+GV + +    +
Sbjct: 747 FTITMTAKKGQLAAMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKD 806

Query: 890 RVVSVERIRE 899
           RV +V    +
Sbjct: 807 RVSAVAIAPD 816



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 103/242 (42%), Gaps = 23/242 (9%)

Query: 674 IAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           + + LD  DE++++       +E    L+ + G       +AI     R   G+      
Sbjct: 392 LLIALDHIDEVIAIIRGSRTDKEASDKLSERFG-LSEAQCTAILQMQLRRLTGL------ 444

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISE 787
           + +++      L     Y +RI   +H+   R++I  + +EI    N    + + G   +
Sbjct: 445 EREKLQEELAELKEKIAYYKRILADEHLM--RQVIKEELQEIKGRFNTPRRTRIAGPAKD 502

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              ++L   E+ ++T++  G+ KR     +R   R GKG++  ++ + + +  L   F  
Sbjct: 503 IDVEDLIADEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHL---FIA 559

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           + ++ ++  S  G + R  V EI  A R  +G   V +    K E +V+   I   E  +
Sbjct: 560 STHNYMLFFSSAGKVYRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAA--IATKEFPE 617

Query: 905 EA 906
           + 
Sbjct: 618 DE 619



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++          ++ ++  +  G VK+  +S+Y   R+   G   + +R+ D +  + 
Sbjct: 604 ESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMSLYDRTRQ--DGLIAINLREGDELIAVK 661

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V     V   SS G         +        G   +  +++  G  +  +      E 
Sbjct: 662 RVKPGEKVAMVSSAGKAISWDESEVRAMGRDTMG---VRGMTVPDGVHVLGL------EI 712

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG----KIAMKLDSRDEILSVETCTQENDIL 697
           +     +   T+ G  +R  + ++   +R G     I M      ++ +++  T E+ ++
Sbjct: 713 ASPGKEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTAKKG-QLAAMKVVTSEDALM 771

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + ++ G  +R  +S I     R + GV+ +++   D+V ++AI    
Sbjct: 772 IISEEGVVMRTSVSDISQLG-RATQGVKVMNVDGKDRVSAVAIAPDG 817


>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
 gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
 gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
          Length = 808

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/843 (41%), Positives = 525/843 (62%), Gaps = 37/843 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGNDE---NEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR    R ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYMG-RTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D V+SM +     D     +  + K  + +         +     N S   G I    
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQIRAGKGIKTYNISEKTGTI---V 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N 
Sbjct: 749 GADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINI 805

Query: 850 NDQ 852
            ++
Sbjct: 806 EEE 808



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 102/249 (40%), Gaps = 36/249 (14%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ D ++S         ++  +K GQ  +  +          +  +  + L    
Sbjct: 381 LKIALDNIDAVIS---------LIRASKTGQEAKIGLIEKFKLTEIQAQAILDMRLQRLT 431

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +         D  ++I  +K + A  RL+    +   ++  ++  +   +E 
Sbjct: 432 GLERDKIEA------EYEDLIKKINRLKEILADERLLLNVIKNEITIIKENYSDERRTEI 485

Query: 789 RCQE-------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  E       L   E+  +T++  G+ KR  S  ++   R G+GI A    + + +  L
Sbjct: 486 RHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGRGISALTTREEDFVRHL 545

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V       + +++  ++KG + ++   EI    R  KG   V +   + DE++ ++  I 
Sbjct: 546 VTTTT---HSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQLSADEKIATLIPI- 601

Query: 899 ESEIVDEAE 907
             +  DE E
Sbjct: 602 --DGNDENE 608


>gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928]
 gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928]
          Length = 875

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/918 (38%), Positives = 519/918 (56%), Gaps = 64/918 (6%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +  +   I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   
Sbjct: 2   DETPQGDRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K Y KCAR+ GEVMG YHPHG++ IYD L R+AQ WSLR++L++G GNFGS   DP AA
Sbjct: 62  EKGYYKCARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC++   A  ++ D+ +DTVDFRPNYDG   EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTECKMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP+HNL EV DG    + NP+   + L+    E I+GPDFPTGA+I+GR GI++AY T
Sbjct: 182 TNIPSHNLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIVGRRGIEDAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +R V + E+    R  +VVTE+PYQVN   +  KIAELV++ ++  IAD+RDE 
Sbjct: 242 GRGSITMRAVVNTEEI-NGRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   +L   ++ +V
Sbjct: 301 SSRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDDVPRTLSLDAFIRHWV 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRT++ L KA++RAH+LVGL  A+  +DEVV +IR SP  + AR  L++   
Sbjct: 361 THQIDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIE--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E+Q  AILE++L RL  L R  I  E N L  
Sbjct: 418 -----------------------LLTIDEIQANAILEMQLRRLAALERQRIEAEHNELMA 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +   IL S  R   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+
Sbjct: 455 KIADYTAILESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMSIEDLIPEEDVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY +R    +YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K
Sbjct: 515 TRGGYTRRTRTDLYRSQKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  +  ARG+ + N+L+    E+I  ++   + E +    Y+V ATK+G +++  L
Sbjct: 575 AHELPDTARDARGQHVANLLAFLPDEKIAQVLDLRDYEQT---PYLVLATKNGLIKKTPL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
            D+     +G IA+ L   DE+++ E  + E+D+LL +K  Q +RF  +   +   GR +
Sbjct: 632 KDYDSPRSAGVIAINLREDDELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPMGRAT 691

Query: 722 VGVRGISLAKGDQVISMAIVLH------ADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GV G+   + D+++SM +V        A +    +   ++    + R   G     T  
Sbjct: 692 SGVIGMRFREDDELLSMDVVRPDTFLFTATSGGYGKRTAVEMFPLRGRGGLGVIAAKTVD 751

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +    V   + +E           ++ ++  G   RT   + R ++R   G+R  ++ K 
Sbjct: 752 ERGGLVGAAVVDE--------GDEVMAITLSGGVIRTRVSEVRPTSRDTMGVRVINLGKG 803

Query: 836 NEIGALV-AVFPVNDNDQIILVSDKGTLIRVP--VNEIRIASRATKGVVIFSTAKDERVV 892
           + + A+     P    D++   +           V E R          +   ++   V 
Sbjct: 804 DTVLAIARNGDPGEVEDELGEEAGAPAEAAGADVVAEARENG------AVVEASEGSEV- 856

Query: 893 SVERIRESEIVDEAESTE 910
               I ESE  DE++ +E
Sbjct: 857 ----IDESEGSDESDGSE 870


>gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 949

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/873 (39%), Positives = 526/873 (60%), Gaps = 34/873 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++  +  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+    
Sbjct: 41  EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 100

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R  L +GQGNFGSVDGD  AA R
Sbjct: 101 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 160

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG  GIAVGMAT 
Sbjct: 161 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 220

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  VA ID+PDI++D LM+ +  PDFPTG +I G  G+  AY TGRG +V
Sbjct: 221 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 280

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ +VVTE+PYQVNK+  +E+IA+ VR++RI  IADLRDESDR G R
Sbjct: 281 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA+A+++ NQ+Y+++ LQ  F VNMVAL G +P+  TL   ++ +V  R E+V
Sbjct: 341 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+  TAR+ L    +  +   D
Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460

Query: 430 LIDLIDDSSYTIGSDGTMY-----------------------LSEVQTRAILELRLARLT 466
            +  I+      G                             L+E Q  AIL LRL+RLT
Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLL 525
           GL R+ I  E   +  +I+E   IL+SR R + +IK+ELL+VK+  D  RRT I   G  
Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 580

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I R+ +VVT+++ G  KR P+  YR Q RGG G  G   R++DF+  L++  +
Sbjct: 581 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 640

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDES 641
           H  +L F+  G  +  + + +P G   A+G+++  ++ ++  +R+  ++       EDE+
Sbjct: 641 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 700

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             N+ YV+ AT+ G V++  L  + +   +G I +K+D  D+++       +N +++ + 
Sbjct: 701 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 760

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ V F     R    RN+ GVRG+ L    +++ M  V  A  D  + +   +H   +
Sbjct: 761 GGRAVHFDEGDARPMG-RNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYGK 819

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELK--LKEQFILTVSEKGFGKRTSSYDFRI 819
           R  +S    +    K   ++           +K  L ++ ++ ++E G   RT   +   
Sbjct: 820 RTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEIST 879

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             R+ +G++  D+   +   A+  V  V D D+
Sbjct: 880 MGRNTQGVQVIDLKDGD---AIADVTRVADTDE 909



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 106/276 (38%), Gaps = 11/276 (3%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R   ++    +  +++  +    V+  +  G VK+  L  Y   R    G  G+ + +
Sbjct: 682 DDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRS--NGIIGIKIDE 739

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D + +  +     +V+  SS G                 RG   +  + L   + +  +
Sbjct: 740 GDQLIEASLTGGDNTVVVASSGGRAVHFDEGDARPMGRNTRG---VRGMELPGDQELVGM 796

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETC 690
           +  P   +  ++L V+   +HG  +R  LSD+    R GK  + L+  D    ++S++  
Sbjct: 797 ISVPP--AMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGV 854

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T+ G  +R  +  I     RN+ GV+ I L  GD +  +  V   D    +
Sbjct: 855 LGDEDLMVITEGGIMIRTRVGEISTMG-RNTQGVQVIDLKDGDAIADVTRVADTDEPEAD 913

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                          + + E      +D+  + + +
Sbjct: 914 DGTADDEAPDADAAAAANGEMDDDAASDAVEDTSGT 949


>gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 834

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/900 (37%), Positives = 523/900 (58%), Gaps = 91/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKVR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E     RE I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+ 
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++           
Sbjct: 364 RRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +E Q  AILELRL +LTGL  + I+ E   L  +I     +
Sbjct: 413 ---------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           LS    +  II+ EL  +       RRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++     + E  ++L T LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V+S  IV    +                                       
Sbjct: 694 VSLKNEEDKVVSCQIVTENQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           PV D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  DE
Sbjct: 759 PVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDE 818


>gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
 gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
          Length = 831

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/911 (39%), Positives = 545/911 (59%), Gaps = 94/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDYLIN----ETKNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  NELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+ +L+ ++E I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIYGKVGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDELNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      + DF+   F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEYDELVSAKIVDKNSKHLLIASHSGTFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GVRGI L + D VI   ++                                     
Sbjct: 686 RSARGVRGIRLNENDFVIGAVVISD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R   R GKG+    ++K  + 
Sbjct: 711 -----------------DHNKLLSVSENGLGKQTLAESYREQARGGKGVIGMKLNK--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV +  V+D +  +++++    +IRV + +IR   R   GV +      ++VV V   
Sbjct: 752 GNLVGIISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLI--DAADKVVYVNSC 809

Query: 898 RESEIVDEAES 908
            + E  +  E+
Sbjct: 810 PKEEEPENLET 820


>gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
 gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
          Length = 894

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/893 (41%), Positives = 552/893 (61%), Gaps = 28/893 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   S T+EM++SYL+Y ++ +  RA+PD+RDG+KPVHRRI+F M +     ++K+VK A
Sbjct: 18  VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G+VMG+YHPHG+ AIYDA+ RM Q WSLR  LI+ QGNFGS+D DPPAA RYTE RL
Sbjct: 78  KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMRYTESRL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  L+ DLG+  VDFRPNYD S +EPVVL AR+PN+LVNGG GIAVGMATNIP H+L
Sbjct: 138 ERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHHL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE ++ C+  + NP + LD +M ++ GPD PTG VI GR+GI+ A+ATGRG+I + GV+ 
Sbjct: 198 GETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFATGRGAIRVSGVAS 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIEL 314
           +E+    R +IV+ ++PY V KA  +EK+AELV EK+I  I+D+RDE SD+ G R+VI++
Sbjct: 258 VEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVIDV 317

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRT 373
           ++ A   V+LN+L   T   +  +VNM  L+   +P    ++ +L  FV FR EVV RRT
Sbjct: 318 RKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVRRRT 377

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L K R+  H  +GL  A   +DE+V +IR S + + AR  L+   ++ S   +   L
Sbjct: 378 MHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSG--EFAQL 435

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + +    +    T  LS+ Q RAILE+RL+RLTGL RD I      L +EI   L+IL+ 
Sbjct: 436 LFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILNV 495

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++ L G++++EL  +K      RRT I +  LD + DED +  +D+VVTV+  GYVKR  
Sbjct: 496 KAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVTAGGYVKRTD 555

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  +++            ED V    + +T T +LFF++ G  + E   +LP  +P 
Sbjct: 556 LPAYMGRQKAADEAV------EDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPN 609

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            RG+AL+N L L   E +  I+  P+D ++   L ++F T  G +RRN  SDF ++N+ G
Sbjct: 610 VRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGG 669

Query: 673 KIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           K+A+KL+  +     +++SV   + E+D+ L ++ G C RF ++ +RV   R+SVGV GI
Sbjct: 670 KVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSVGVAGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL + D+VIS++++ H +A   ER  Y+          +G +               +  
Sbjct: 730 SLGRKDKVISVSVLRHFEATGTEREAYL----------AGGSARTKDETTGEPATFELPS 779

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +R   ++  EQ IL+V+E GF KRTSS+ +RI+ R G+G+ A  ++  +  G LVA+ PV
Sbjct: 780 DRMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLA--DRTGDLVALMPV 837

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + D +++ +D G   R    E+ I +R T+G   F+    + +VSV +I   
Sbjct: 838 EEQDVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVVKIAAE 890



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/247 (17%), Positives = 89/247 (36%), Gaps = 27/247 (10%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+      L   D +   +    ++ ++  T  G   R   + +  + GR         
Sbjct: 518 RRTAIEDSAL---DALSDEDLVELKDIVVTVTAGGYVKR---TDLPAYMGRQ-------- 563

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--- 785
               D+ +   +           + +  +       ++    E        ++   +   
Sbjct: 564 -KAADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPNVRGRALVNFLELK 622

Query: 786 SEERCQEL--------KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +EE  Q +         +++  ++ V++ G  +R  + DF   N+ GK     +      
Sbjct: 623 AEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGKVAIKLEDENGEP 682

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVER 896
            G LV+V  V+  D + L S  G   R  V ++R+  SR + GV   S  + ++V+SV  
Sbjct: 683 QGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSVGVAGISLGRKDKVISVSV 742

Query: 897 IRESEIV 903
           +R  E  
Sbjct: 743 LRHFEAT 749


>gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 876

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/916 (37%), Positives = 496/916 (54%), Gaps = 92/916 (10%)

Query: 1   MTEHIISSDEE-------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M + I    +E           I  V +  EMQ SYL YA++VI+GRA+P + DGLKPVH
Sbjct: 1   MADDITPEPDEVRSEPAHNHGRIDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+++GM   G   +K + KCAR+ GEVMG YHPHG+A IYDAL R+ Q WSLR  L  G
Sbjct: 61  RRVIYGMYDGGFRPDKSFSKCARVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS      AA RYTE ++ + A  ++ D+ ++TVDF  NYDG  QEPVVL +R+PN
Sbjct: 121 QGNFGSPGNQGAAAPRYTETKMSQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G +  ++NPD   + L    ME I GPDFPT A
Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVSAGALWALENPDATREELLEALMERIPGPDFPTAA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILG  GIK+AY TGRGSI +R V +IE+    R  +V+TE+PYQVN   +  KI +L R
Sbjct: 241 QILGTRGIKDAYRTGRGSITMRAVVNIEEIQ-GRTCLVITELPYQVNPDNVAVKIGDLAR 299

Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           E +I  IAD+RDE+  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+A+    
Sbjct: 300 EGKITGIADIRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G +  ++  +  V+VRRT+Y L KA +R H+L G   A+  LDEV+ +IR SP
Sbjct: 360 PRTLSLDGFVSHWIDHQVNVIVRRTRYRLRKAEERMHILRGYLKALDALDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             + A   L +                           + + ++Q +AIL+++L RL  L
Sbjct: 420 TAQDANEGLQK--------------------------LLDIDDIQAQAILDMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDM 527
            R  I +E   L   I +  DIL+S +R   II+ EL  + D     RRT+I+ G   D+
Sbjct: 454 ERQKIVDEATELEARIADFNDILASPARQRTIIRDELTGIVDRFGDDRRTQILHGFDGDV 513

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E+MV+TV+  GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH 
Sbjct: 514 SIEDLIAEEEMVITVTRDGYIKRTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHH 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++ G VY+ K + +P     A+G+ + N+L+L   E I  I+   +   +    Y
Sbjct: 574 WLLFFTNKGRVYRSKAYEVPEAGRDAKGQHVANLLALQPDEEIAQILDIRDYSVA---TY 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V AT++G V++ +L ++    + G IA+KL                            R
Sbjct: 631 LVLATRNGLVKKTRLDEYDTNRQGGVIAIKL----------------------------R 662

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S       +             D+++S  +V   D      I  +  +    R  + 
Sbjct: 663 GQVSDEADETEQGGA----------DELVSALLVDEGDD-----ILLISRLGMSLRFSAT 707

Query: 768 DTEEITSLKNDSSVEGNISEE----RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
           D       ++ S V+G    E        +   ++F+  V+E G+ KRT+  ++R+ NR 
Sbjct: 708 DNALRPMGRSTSGVKGMDFREGDSLLSASVAKDDEFVFVVTEGGYAKRTAVTEYRMQNRG 767

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G GI+   ++  ++ G L     V++ D++++V   G ++R  V E+    R T GVV  
Sbjct: 768 GLGIKVARLT--DDRGVLAGGMMVSEGDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFA 825

Query: 884 STAKDERVVSVERIRE 899
               D+R++++ R  E
Sbjct: 826 RAGGDDRIIAIARNAE 841


>gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39]
 gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183]
 gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A
 gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae]
 gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 834

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/900 (37%), Positives = 523/900 (58%), Gaps = 91/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+ +    K+
Sbjct: 4   KDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKVR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E     RE I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+ 
Sbjct: 304 VLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++           
Sbjct: 364 RRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +E Q  AILELRL +LTGL  + I+ E   L  +I     +
Sbjct: 413 ---------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           LS    +  II+ EL  +       RRT I     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++     + E  ++L T LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V+S  IV    +                                       
Sbjct: 694 VSLKNEEDKVVSCQIVTENQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           PV D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  DE
Sbjct: 759 PVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDE 818


>gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
 gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
          Length = 952

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/915 (37%), Positives = 514/915 (56%), Gaps = 25/915 (2%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E+  S     +  I  + I DEMQNSYLTYA++VI+ RA+PD+RDGLKP  RRIL  M 
Sbjct: 7   DENQNSPQVPGDDRIAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMN 66

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            + +  N    KC++I+GE MG YHPHG+ AIY  L RMAQDW++R +LI+ QGNFGS+ 
Sbjct: 67  DLNLGPNGSRTKCSKITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLA 126

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G PPAA RYTE RL   A  +L D+  +TVDF P YD    EP VL +R+PN+LVNG  G
Sbjct: 127 GLPPAAHRYTEARLSPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSG 186

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMAT+IP HNL EV +    VID P+  +D + +++ GPDFPTG VI G+ G +  Y
Sbjct: 187 IAVGMATSIPPHNLTEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVICGQFGTRQGY 246

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           +TGR +I +R  +H +      + IVVTEIPY   +  + EK+  LV+++R+  IA + D
Sbjct: 247 STGRSTITLRAKTHFDTEKQS-DVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVVD 305

Query: 302 ESDRQ----GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            +DR+       + I LKR A  +V+LNQLY+Y+ LQ+ FS+ ++AL G +P+  ++  +
Sbjct: 306 LTDRKIPNWQVHLQIVLKRDADKEVVLNQLYKYSPLQTTFSIILLALVGNRPQLLSIKDM 365

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+  R  V+ RRT++ L++AR R H + G+ IA  N+DEV+  IR SP+   A+  L
Sbjct: 366 LLEFIRHRVTVIRRRTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKNRL 425

Query: 418 MQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                 A  I   +      +     G+     LS  Q  AI+ ++L  L  L R+ + +
Sbjct: 426 RDIKVPAEMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKLGD 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIV 534
           E   L  EI ECL +LS  + +   +++E+  ++ +    RRT I E  L D+  ++ I 
Sbjct: 486 EHRKLLEEIDECLHLLSDEAHIRAAVREEMDDLQRKYPDKRRTEISEIELTDVNKDELIA 545

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
              MVVT++  GY+KR  L+ Y+AQ RGG+G +G    +ED +  +F+ STH+ +LFF++
Sbjct: 546 EAPMVVTLTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVASTHSYLLFFTN 605

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG VY +KV+ LP+ +  A+G+AL+N+LSL  GE +   +   E +   +  +++ ATK 
Sbjct: 606 LGRVYWQKVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFD---DERFLMMATKK 662

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  LS + +  R G IA+KLD  DE++ V     E+D++++T  G  +RF     R
Sbjct: 663 GVVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRFNHDDAR 722

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               RN+ GV+G+SL K D V+ M  V+  +       C   +         G ++   +
Sbjct: 723 AMG-RNTRGVKGVSLGKDDHVVGM--VVADEQMCLLTACENGYGKRTPFGFGGASDAEEA 779

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
             +D +V+                   T S            +R   R GKG+R    ++
Sbjct: 780 PVDDDAVDSTEDSSADSSDDSSSDEPDTRSN---------MRYRRQKRGGKGLRDIRTTE 830

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G  V +  V D+D ++++S  G + R+   +I    R T+GV I      +R+V +
Sbjct: 831 RN--GKAVDILAVADDDDVLIISSAGKIQRIRAADISQVGRNTQGVRIMRMGDGDRLVGL 888

Query: 895 ERIRESEIVDEAEST 909
            RI     VD  E  
Sbjct: 889 ARIPAEINVDSDEEE 903


>gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5]
 gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5]
          Length = 928

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/892 (39%), Positives = 522/892 (58%), Gaps = 60/892 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M  +  ++NK Y K
Sbjct: 3   ESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR  +++GQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+L+NG  GIAVGMATN+  H
Sbjct: 123 RMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A  +NP I  + LM  I GPDFPTG +I GR GI +AY TG+G + +RG 
Sbjct: 183 NLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIYGRAGILDAYRTGKGRLHVRGR 242

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             IE       + DRE+IV TE+PYQ NKA ++E+IAELVR+K+I  I ++RDESD+ G 
Sbjct: 243 YIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+EV
Sbjct: 303 RIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + LNKAR R H+L GL +A+AN+DE++  I+ S N   AR  L+  +W +  + 
Sbjct: 363 VTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGSGSVV 422

Query: 429 DLIDLIDDSSYT---------------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            ++      S                 I +  +  LS  Q  AIL+++L RLTGL +D +
Sbjct: 423 AMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLEQDKL 482

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   L  EI     IL    +L+ II  E++ ++D     RRT I++  +D   ED I
Sbjct: 483 TEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDLI 542

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +V+TVS  GY K  P+  Y AQ+RGGKG+S   M+++D +  L + STH +VL F+
Sbjct: 543 PEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLIVTSTHATVLCFT 602

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--------------- 638
             G V+  + + +PI S  ARG+ L+N++ LN  E +TTI+P P+               
Sbjct: 603 DTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVEELSSKGETSADV 662

Query: 639 ---------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
                    D +     +V FAT +G V+R +L  F  I  +G IA+ L+  D+++S   
Sbjct: 663 TLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSARI 722

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD---- 745
                +++L    G+ +RF  +  R    R + GVRG+ L   + + S+ ++        
Sbjct: 723 TNGSQEVMLFASSGKAIRFNETDARAMG-RTAKGVRGMRLTADEFIKSLVVIEDDVREIL 781

Query: 746 ---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
               +   +  ++   + Q R   G     TS +N + V     +            I+ 
Sbjct: 782 IACENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRATKVD--------STDDIIL 833

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +S+KG   RT       S R+ +G+    +SK  ++ A+  V     N+++I
Sbjct: 834 ISDKGTLVRTPVEHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGNNELI 885



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 105/268 (39%), Gaps = 17/268 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  + A  R   G   V + + D +    I +    V+ F
Sbjct: 675 QAEPPFVFFATANGTVKRVELKQF-ANIRS-NGLIAVGLEEGDKLVSARITNGSQEVMLF 732

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +S G   +            A+G   +  + L   E I +++   +D        ++ A 
Sbjct: 733 ASSGKAIRFNETDARAMGRTAKG---VRGMRLTADEFIKSLVVIEDDVRE-----ILIAC 784

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + +F   NR G   + + +      ++        +DI+L +  G  VR P
Sbjct: 785 ENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRATKVDSTDDIILISDKGTLVRTP 844

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +      +GRN+ GV  I L+K +++++MA V H + + +      +  + +   + G  
Sbjct: 845 V-EHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGNNELIDAMREDGTFE---VKGQE 900

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
           +      N  + E +  +    E    E
Sbjct: 901 QMDVDAANSDATETDFDDTSHTETDTDE 928


>gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
 gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
          Length = 901

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/834 (41%), Positives = 521/834 (62%), Gaps = 36/834 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A
Sbjct: 52  LKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSA 111

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL
Sbjct: 112 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 171

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A  +L +L K+TVD +PNYD S  EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 172 TRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 231

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV D    +IDNP++  + LM ++ GPDFPTG +I+G  GIK+AY TGRGSI +R   H
Sbjct: 232 GEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 291

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R+++VVTEIPYQVNK  + EKIA+ V EK+I  I+D+RDES+R+G R+VI+LK
Sbjct: 292 VEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 351

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   V+LN LY+ T LQS F +  +AL    P   +L  IL+ ++  + +VV RRT++
Sbjct: 352 RDAVPQVVLNNLYKKTQLQSNFGIIDLALVDGVPRTLSLREILRHYIDHQIDVVRRRTEF 411

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ R H+L GL  AV N+DE+V IIR S +   A++ + +R               
Sbjct: 412 DLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNER--------------- 456

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q  AIL++RL RLTGL R D+ +E++ L ++I    D+L+   
Sbjct: 457 -----------FGLDEIQGEAILQMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEE 505

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L +I  EL  + +     RRT+I E  + +++ ED I  EDMVVTV+H GYVKRVP+ 
Sbjct: 506 KILAVIADELREISNRYADKRRTQISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 565

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q+RGGKG  GV +++ DFV +LF+ STH  VLFF++LG VY+ KV  LP+GS   +
Sbjct: 566 IYRSQKRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTK 625

Query: 615 GKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G A+IN++ +L +GE++  ++   +      + Y++FATK G V++  +S++ +  + G 
Sbjct: 626 GSAIINVIETLAEGEKVKAVITTRD---FPEDNYLMFATKQGMVKKTAMSEYDRTRKDGL 682

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+++V      + ++L +  G+ + F  +  R    R + GVRGI+L    
Sbjct: 683 IAINLKDGDELVNVRRVHPGDKVVLCSSDGKAILFDEAEARSMG-RGTSGVRGITLKGNA 741

Query: 734 QVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            ++ M I   + D        Y K  +     +     +       +  +GN+   R   
Sbjct: 742 TMLGMEITNGNGDLFVITEKGYGKRTAISEYPVHKRGGQGVFTITMTEKKGNLVACR--- 798

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +   +  I+ +SE+G   R  + D     RS +G++  ++S  + + A+  +  
Sbjct: 799 VVGPQHEIMIMSEEGVVIRVKAGDISKLGRSTQGVKVMNLSGSDVVSAVARMVA 852



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 96/285 (33%), Gaps = 85/285 (29%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L   E+I  ++     E          + ++ + RR ++S+             LD  D 
Sbjct: 501 LAHEEKILAVIADELRE---------ISNRYADKRRTQISEQD--------IQNLDVED- 542

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                   +E+ ++  T  G   R P+   R    R   GV+G+SL + D V ++ +   
Sbjct: 543 -----LIAEEDMVVTVTHAGYVKRVPVEIYRS-QKRGGKGVQGVSLKENDFVENLFVAST 596

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                                  ++L  
Sbjct: 597 -----------------------------------------------------HDYVLFF 603

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDV----SKINEIGALVAVFPVNDNDQIILVSDK 859
           +  G   R   ++  + +R+ KG    +V    ++  ++ A++      +++ ++  + +
Sbjct: 604 TNLGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGEKVKAVITTRDFPEDNYLMFATKQ 663

Query: 860 GTLIRVPVNEIRIASRATK-GVVIFSTAKDERVVSVERIRESEIV 903
           G + +  ++E     R  K G++  +    + +V+V R+   + V
Sbjct: 664 GMVKKTAMSE---YDRTRKDGLIAINLKDGDELVNVRRVHPGDKV 705



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 61/160 (38%), Gaps = 6/160 (3%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+++ +      DA+  +R   M        +      ++   +       ++ +E  Q 
Sbjct: 434 DEIVHIIRSSQDDAEAKKR---MNERFGLDEIQGEAILQMRLRRLTGLARQDLVDEISQL 490

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 +   ++ +       + + R ISNR     R   +S+ + I  L     + + D
Sbjct: 491 RLDIAYYEDLLAHEEKILAVIADELREISNRYADKRRT-QISEQD-IQNLDVEDLIAEED 548

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++ V+  G + RVPV   R   R  KGV   S  +++ V
Sbjct: 549 MVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFV 588


>gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
 gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/894 (38%), Positives = 505/894 (56%), Gaps = 87/894 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +      + I  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV 
Sbjct: 6   NDANAPAERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVS 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N  + K + I G+ MG YHPHG +AIYD L RMAQD+S+R  LI+GQGNFGS+DGDP A
Sbjct: 66  SNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSMDGDPAA 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+   A  LL D+ KDTVDF  NYD   QEP VL ++ PN+L+NG  GIAVGM
Sbjct: 126 AMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSSGIAVGM 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           +TNIP HNLGE+VD  V ++ NPD  ++ LME I+GPDFPTG  I+GR  I +AYATGRG
Sbjct: 186 STNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIVGRDAIYSAYATGRG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            + +R    ++   G   +IV++E+PYQ NKA ++E+IA+ V E +I  I+DLRDESDR 
Sbjct: 246 RLRVRAEYEVDPEEG---RIVISELPYQENKARVVERIADDVNEGKIEGISDLRDESDRN 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELKRGA+ DV+ N+L  +  L+S F V  +AL   +P+  +L   L+ ++  R 
Sbjct: 303 GVRIVVELKRGANIDVVENRLLDH-HLESTFGVINLALVDGQPKVLSLKESLQHYIDHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RR++Y L +A DRAH+L G   A+ N+++VV +IR   + + AR  L +       
Sbjct: 362 EVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGLQE------- 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              +   SE Q   I+ ++L  LT +   +I +E   +   I  
Sbjct: 415 -------------------SFDFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+SR +L  +I  EL  VKD+ D  RRT I+E    +  ED I  ED VV ++   
Sbjct: 456 LESVLNSREKLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCVVVITEDD 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+  +  Q RGGKG  G   ++ D V+ +F  ++H  +L F++ G VY+ K + +
Sbjct: 516 YIKRMPVENFDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARGK+ IN++ L+ GE +T ++   E     ++  +   T++G V+R   S+F 
Sbjct: 576 PEMSRTARGKSAINLIDLDDGEELTAVVSTDE---FGDDECITMVTRNGYVKRTCCSEFE 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA KL+  DE++ V+      D+++ T+ G  +RF  S +     R++ GV G
Sbjct: 633 NILSTGIIAAKLEDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEMG-RSARGVNG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D+V +M      D                                         
Sbjct: 692 IKLQDDDKVAAMVATDDDD----------------------------------------- 710

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + +LTV+E GFGKRT   ++R  +R GKG+   D+   +  G +     
Sbjct: 711 ----------PRSLLTVTEHGFGKRTKLDEYRTQSRYGKGL--IDIKTDDRNGRVSTAKA 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V D D ++++S++G ++R+   ++    R TKGV I    +D+RV SV  +   
Sbjct: 759 VTDEDHLVIMSEQGQIMRIRAGDVSQVGRNTKGVTIMGLEEDDRVASVTVVPAE 812



 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 100/273 (36%), Gaps = 11/273 (4%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETCTQE 693
              ++       VV  T+   ++R  + +F   NR GK  +  D    D +  V      
Sbjct: 496 VTHEDLIPEEDCVVVITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKVFRANSH 555

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-DYDERI 752
           + +L  T  GQ  R     I   + R + G   I+L   D    +  V+  D    DE I
Sbjct: 556 DYLLCFTNQGQVYRLKTYEIPEMS-RTARGKSAINLIDLDDGEELTAVVSTDEFGDDECI 614

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +      +R    + E I S    ++   +  E    ++      ++  +E G   R 
Sbjct: 615 TMVTRNGYVKRTCCSEFENILSTGIIAAKLEDSDELIDVDVTDGTGDLVIATEAGMTIRF 674

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNE 869
           S  +     RS +G+    +   ++    VA     D+D    ++ V++ G   R  ++E
Sbjct: 675 SESEVSEMGRSARGVNGIKLQDDDK----VAAMVATDDDDPRSLLTVTEHGFGKRTKLDE 730

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            R  SR  KG++   T      VS  +    E 
Sbjct: 731 YRTQSRYGKGLIDIKTDDRNGRVSTAKAVTDED 763



 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 11/164 (6%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE---RCQELKLKEQFILTVSE 805
           D     +        +I+ + +E+    +D      I +E     ++L  +E  ++ ++E
Sbjct: 454 DYLESVLNSREKLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCVVVITE 513

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             + KR    +F   NR GKGI   D  + + +  +   F  N +D ++  +++G + R+
Sbjct: 514 DDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKV---FRANSHDYLLCFTNQGQVYRL 570

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
              EI   SR  +G   + +      E + +V  +   E  D+ 
Sbjct: 571 KTYEIPEMSRTARGKSAINLIDLDDGEELTAV--VSTDEFGDDE 612


>gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
 gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
          Length = 864

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/923 (36%), Positives = 496/923 (53%), Gaps = 96/923 (10%)

Query: 1   MTEHIISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +       EE     + +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADENTPVTPEEGGVIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL +R+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    +++P+   + L+E     I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVAVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EVVVRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                          G + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARGGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E  +IL+S  R  GI+  EL ++ ++    R+T++V    DM  ED
Sbjct: 454 KIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAIVEKYGDDRQTKLVPYDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTV+  GYVKR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVTRGGYVKRTKTDDYRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+             +  ++ F  DE+          
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQH------------VANLLAFQPDEAI--------- 612

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
                                          EIL++        ++L TK G   + P+ 
Sbjct: 613 ------------------------------AEILAIRDYDAAPYLVLATKGGLVKKTPLK 642

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                    S GV  I+L + +      ++       D+ +  +   +   R  + D   
Sbjct: 643 DYD---SPRSGGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSIRFTATDESL 699

Query: 772 ITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
               +  S V+G    E    L +       F+ T ++ G+ KRT   ++R+  R G GI
Sbjct: 700 RPMGRATSGVKGMSFREGDALLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGI 759

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +A  + +  + G LV    V + D+I+ +S  G +IR  V+ +R   R T GV + +  K
Sbjct: 760 KAAKIVE--DRGELVGALVVEETDEILAISLSGGVIRTRVSGVRETGRDTMGVQLINLGK 817

Query: 888 DERVVSVERIRESEIVDEAESTE 910
            + VV + R  E+    E    +
Sbjct: 818 RDAVVGIARNAEAGREAEEVDGD 840



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E + ++           +V  +  G VK+ PL  Y + R GG     +  R++   D + 
Sbjct: 610 EAIAEILAIRDYDAAPYLVLATKGGLVKKTPLKDYDSPRSGGVIAINLREREDGSDDELI 669

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS+   +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 670 GAELVSSDDDLLLISKKAQSIRFTATDESL-RPMGRATSGVKGMSFREGDALLSMNVVR- 727

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R E++      + ++
Sbjct: 728 -----PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDE 782

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  +  G  +R  +S +R   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 783 ILAISLSGGVIRTRVSGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDV 841

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
                     +  T+E  +   +
Sbjct: 842 AVDETAEGAATTGTDEGEAPSAE 864


>gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
 gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
          Length = 839

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/871 (38%), Positives = 500/871 (57%), Gaps = 53/871 (6%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MTE   S+  E E             I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTESPESTPNEPEVPEALAAVVSHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDF 225
           R PN+L+NG  GIAVGMAT IP HNL E+       +++P+      L+AL+EI++GPDF
Sbjct: 181 RIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+G++GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGQSGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++ +V  + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  E AR+ L++                           + + E+Q  AIL+++L R
Sbjct: 421 RRSPTVEDARQGLIR--------------------------LLEIDEIQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+I+   
Sbjct: 455 LAALERQRILDDLAKLELEIADLKDILAKPERQRRIVSEELGEIVAKWGDERRTKIIPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+  P  + +  
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQVA-- 632

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ +L +F      G IA+ L   DE++        +D+LL +K  Q
Sbjct: 633 -PYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGAALVGPTDDLLLVSKNAQ 691

Query: 705 CVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQR 762
            +RF  +   +   GR + GV G+  +  D++++M +V    D        Y K    + 
Sbjct: 692 AIRFNATDEALRPMGRATSGVIGMRFSDEDELLAMEVVREGLDVLVATNGGYAKRTPIEE 751

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-N 821
             + G   +       +   G +       +   +  +  ++  G   RT     R + +
Sbjct: 752 YPVQGRGGKGVLTAKITERRGGL---VGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRD 808

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R+  G++  D+   + +  +      ++ D+
Sbjct: 809 RNTMGVKLMDL--PDGVTIVAIARNADEPDE 837


>gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
          Length = 874

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/937 (37%), Positives = 508/937 (54%), Gaps = 116/937 (12%)

Query: 1   MTEHIIS-------SDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +           SDE  E     +  V +  EMQ SYL YA++VI+ RA+PD+RDGLK
Sbjct: 1   MADENTPNTPDELTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L
Sbjct: 61  PVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++  GNFGS   DP AA RYTEC++   A  +L D+ ++TVDF+ NYDG  QEP VL AR
Sbjct: 121 VDSNGNFGSPGNDPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPAR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFP 226
            PN+LVNG  GIAVGMATNIP HNL EV +G    + NP    + L+E     I+GPDFP
Sbjct: 181 IPNLLVNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           TGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+
Sbjct: 241 TGALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIAD 299

Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV++ ++  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL 
Sbjct: 300 LVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 359

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR
Sbjct: 360 DGVPRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIR 419

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S   +TAR  LM                          G + + E+Q  AILE++L RL
Sbjct: 420 RSDTVDTARGGLM--------------------------GLLEIDEIQANAILEMQLRRL 453

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I  E + L  +I E   IL+S  R   II +EL ++ ++    RR+++V    
Sbjct: 454 AALERQKIVQEHDELQSKIDEYNAILASPERQRQIISEELTAIVEKFGDDRRSKLVPFDG 513

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           DM  ED I  ED+VVT++  GYVKR     YR+Q+RGGKG  G  ++ +D V+  F+ +T
Sbjct: 514 DMSIEDLIAEEDIVVTITRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTT 573

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF++ G VY+ K + LP    +ARG+             +  ++ F  DE     
Sbjct: 574 HHWLLFFTNKGRVYRAKAYELPDAGREARGQH------------VANLLAFQPDEKI--- 618

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
                                                 IL++        ++L TK G  
Sbjct: 619 ------------------------------------ARILAIRDYEAVPYLVLATKSGLV 642

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISMAIVLHADADYDERICYMKHMSA 760
            + P+          S GV  I+L +      D++I   +V  AD      +  +   + 
Sbjct: 643 KKTPLKDYD---SPRSGGVIAINLREMADGREDELIGAELVSSADD-----LLLISRKAQ 694

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSYD 816
             R  + D       +  S V+G    E  + L +       F+ T ++ G+ KRT+  +
Sbjct: 695 SIRFTATDESLRPMGRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKRTNVDE 754

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R 
Sbjct: 755 YRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRD 812

Query: 877 TKGVVIFSTAKDERVVSVERI----RESEIVDEAEST 909
           T GV + +  K + VV + R     RE+E V+E  +T
Sbjct: 813 TMGVQLINLGKRDAVVGIARNAEAGREAEEVEEDSAT 849



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 18/269 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E +  +           +V  +  G VK+ PL  Y + R G  G   + +R+     ED 
Sbjct: 616 EKIARILAIRDYEAVPYLVLATKSGLVKKTPLKDYDSPRSG--GVIAINLREMADGREDE 673

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +VS+   +L  S      +       +  P  R  + +  +S  + + + ++   
Sbjct: 674 LIGAELVSSADDLLLISRKAQSIRFTATDESL-RPMGRATSGVKGMSFREDDELLSMNVV 732

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + 
Sbjct: 733 R------PGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEET 786

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E   
Sbjct: 787 DEILAITLSGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEE 845

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                SA     + +  E T    D + E
Sbjct: 846 DSATGSAPAEEAASEAVEGTLPPADETEE 874


>gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
          Length = 854

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/910 (39%), Positives = 533/910 (58%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA I++PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+    R QI+VTEIPY VNKA ++E IA+LV+EKRI  I+DL 
Sbjct: 240 YATGRGKITLRGRATIEEKKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+VI++++ A+  V+LNQLY+YT LQ    V M+A++   P+  TL  +++ 
Sbjct: 300 DETNRKGMRIVIDVRKDANPQVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQ 419
           +V F++EVV RRT+Y L KAR+RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELGS 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++  +IL+  +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEIETVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQ+RGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   +D ++    +V   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSKD-TANEGGFVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF     R    R
Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  GVR I LA+                                              D 
Sbjct: 692 SGHGVRAIKLAE---------------------------------------------GDE 706

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   I  E           ILTV+E G G+R+    +RI+ R GKGIR  D SK     
Sbjct: 707 VVGVCICRE--------NATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASKD---- 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + AV  V+D D ++L S +G +IR+  NEI + SR   GV +    ++++V+ + R   
Sbjct: 755 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLAR--- 811

Query: 900 SEIVDEAEST 909
           ++  DEA++ 
Sbjct: 812 TDHDDEAQTE 821


>gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 867

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/896 (40%), Positives = 535/896 (59%), Gaps = 94/896 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V +  EM+ S++ YA++VI  RA+PD+RDGLKPVHRRILF M   G   +K Y K
Sbjct: 24  NNIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRK 83

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA   G V+G +HPHG+AA+YD++ R+AQD+S+R  +++G GNFGS DGDPPAA RYTE 
Sbjct: 84  CATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEA 143

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ D+ K+TVDF+PN+D    EP+VL +R+PN+LVNG  GIAVGMAT+IP H
Sbjct: 144 RLTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPH 203

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE +D  V  I+NPD DL+ +MEI+ GPDFPTG  ILG +GI+  Y TG+G I +R  
Sbjct: 204 NLGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTILGLSGIRETYRTGKGRITVRSA 263

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
           + IE    +R +IVV ++PY VNKA ++EK+A+LV+EKRI  I+ +RDESDR +  R+VI
Sbjct: 264 ASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIVI 323

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLIGILKAFVAFREE 367
           ELKR A+  V+LN+LY+ T LQ  F+ NM+AL       Y+P+  TL+  L  ++A ++ 
Sbjct: 324 ELKRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQKS 383

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV+RRTK+ L+KA  R H++ GL  A+ N+DEV+RIIR S N ETA++ L +R       
Sbjct: 384 VVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCER------- 436

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 S  Q + I+++RL RLT L R+ ++ EL+ L ++I+  
Sbjct: 437 -------------------FDFSIRQAQHIVDMRLGRLTALERERLQKELDELIVKIEYF 477

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             I++  S L  +I  EL  +K      RRT I    L + EDE+ +  E++V+T++H G
Sbjct: 478 NRIINESSLLNQVICDELTDLKTRYANKRRTVIEPYSLDEFEDEELVKEEEVVITLTHFG 537

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR P+  Y+ Q RGG+G SG+  R++DFV  L   STH  +LFF++ G V++ K +++
Sbjct: 538 YVKRQPVDTYQQQHRGGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQI 597

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    QA+G+A++N+L L +GE++ T++   E        Y++ AT  G +++  L ++ 
Sbjct: 598 PEAGRQAKGQAIVNLLQLVEGEKVRTVITVHEFNRED---YLLMATARGMIKKTSLYEYA 654

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I ++G IA+ L   DE++ V+      +++L T  G  +RF  + IR   GRN+ GV G
Sbjct: 655 NIQKNGLIAINLRPDDEVIGVKVSRLHEEVILATAGGYSLRFDTNDIR-NTGRNTFGVSG 713

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D+VI MA V                                             
Sbjct: 714 IKLRHSDKVIGMAAV--------------------------------------------D 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           EER          +L +S+ G+GKR+   ++RI NR GKG+     ++    G L  +  
Sbjct: 730 EERH---------LLVISKNGYGKRSEFNEYRIQNRGGKGLITYKPTEQ--TGDLAGIAS 778

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +ND D II+++D G +IRV   EI I SR TKGV +  TA   ++V +  ++  + 
Sbjct: 779 INDEDDIIIINDAGIVIRVATKEIPILSRVTKGVRLMRTAG--QIVDLAVVQHDDE 832



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + E   +EL  +E+ ++T++  G+ KR     ++  +R G+GI      + + +  LV  
Sbjct: 515 LDEFEDEELVKEEEVVITLTHFGYVKRQPVDTYQQQHRGGRGISGLQTREDDFVETLVTT 574

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
              + +D ++  ++ G + R+   +I  A R  KG   V +    + E+V +V  + E  
Sbjct: 575 ---STHDHLLFFTNTGRVFRLKGYQIPEAGRQAKGQAIVNLLQLVEGEKVRTVITVHEFN 631

Query: 902 IVD 904
             D
Sbjct: 632 RED 634


>gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 875

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/884 (38%), Positives = 502/884 (56%), Gaps = 71/884 (8%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +       EEE         +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVH
Sbjct: 1   MADENTPVMPEEEPTVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ 
Sbjct: 61  RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDS 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL AR PN
Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G    ++NP+   + L+    E I+GPDFPTGA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+P+Q N   + +KIA+LV+
Sbjct: 241 LVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVK 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQS F  NM+AL    
Sbjct: 300 DGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  ++EV+ +IR S 
Sbjct: 360 PRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSN 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E+Q  AILE++L RL  L
Sbjct: 420 TVEIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               I  E + L  +I E  +IL+S  +   I+ +EL ++ D+    RR+++V    DM 
Sbjct: 454 EHQKITAEHDELQAKINEYNEILASPEKQRQIVSEELAAIVDKFGDDRRSKLVPFDGDMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 IEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP     ARG+ + N+L+    E+I  I+   + E++    Y+
Sbjct: 574 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYEAA---PYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLG 703
           V ATK G V++  L D+      G IA+ L        DE++  E  + E+D+LL +K  
Sbjct: 631 VLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISKKA 690

Query: 704 QCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYM 755
           Q +RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    
Sbjct: 691 QSIRFTATDDALRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVD 750

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           ++    R  +     +I   +   S+ G +  E   E       IL ++  G   RT   
Sbjct: 751 EYRVQGRGGLGIKAAKIVEDRG--SLVGALVVEEADE-------ILAITLGGGVIRTRVN 801

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVA-------VFPVNDNDQ 852
           + R + R   G++  ++ K + +  +            V+  D+
Sbjct: 802 EVRETGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGTDE 845



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 102/273 (37%), Gaps = 16/273 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD---EDFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +   +   +D + 
Sbjct: 613 EQIAQILAIRDYEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELI 672

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 673 GAELVSAEDDLLLISKKAQSIRFTATDDAL-RPMGRATSGVKGMSFREGDELLSMNVVR- 730

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 731 -----PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEADE 785

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A   +A+A  +      
Sbjct: 786 ILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIA--RNAEAGREAEEVDG 842

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              +      +     +      ++      EE
Sbjct: 843 TDEAEGATGEAHAETVVEGTVEGTAPSAGEHEE 875


>gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
 gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
          Length = 851

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/873 (40%), Positives = 532/873 (60%), Gaps = 35/873 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDTRIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NPD     LM+++ GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R  SA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A++  + EV+
Sbjct: 303 ISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKDILVAYLTHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLID---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 ----------------GYALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ + R+  II  ELL ++ +    RRT + V  + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHQERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I  ++    + S   + Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEDDEKIQAVISVRGEASESKD-YLFFVTRLGVVKRTAVSEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       IL+ T+ G  VRF   ++RV   R++ GVRGI 
Sbjct: 636 RTNGLKALTLHDGDEVLSVQITNGTQSILIATQAGYSVRFAEDSVRVMG-RSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D VI   +V  +D         + K   A    I G   +     N +   G ++ 
Sbjct: 695 LRDNDVVIGADVVTSSDNVLVITEKGFGKQTPASEYPIKGRGGKGIKTANITDKNGVLA- 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +    + I+  + +G   R ++     + R+  G+R   + +  ++  L  V   
Sbjct: 754 --GMTIIHGHEDIMVTTTQGVMIRFAADSVSQTGRATLGVRLIRLEEGTKVATLTKVDQE 811

Query: 848 NDNDQIIL-VSDKGTLIRVPVNEIR-IASRATK 878
           +  D+I   V+D   L    ++++  + SRA +
Sbjct: 812 DLPDEIATDVTDDTVLNNEQLSQVSELLSRAAR 844



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 15/247 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D +  V+ LG VKR  +S +   R    G   + + D D V  + I +   S+L  +  G
Sbjct: 613 DYLFFVTRLGVVKRTAVSEFANIR--TNGLKALTLHDGDEVLSVQITNGTQSILIATQAG 670

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +  +     + +    A G  +  I   +    I   +    D        V+  T+ G 
Sbjct: 671 YSVRFAEDSVRVMGRSAAG--VRGIRLRDNDVVIGADVVTSSDN-------VLVITEKGF 721

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAI 713
            ++   S++    R GK     +  D+   +  +       DI++TT  G  +RF  +  
Sbjct: 722 GKQTPASEYPIKGRGGKGIKTANITDKNGVLAGMTIIHGHEDIMVTTTQGVMIRF-AADS 780

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR ++GVR I L +G +V ++  V   D   +               +S  +E ++
Sbjct: 781 VSQTGRATLGVRLIRLEEGTKVATLTKVDQEDLPDEIATDVTDDTVLNNEQLSQVSELLS 840

Query: 774 SLKNDSS 780
               D  
Sbjct: 841 RAARDDE 847


>gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 939

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/923 (37%), Positives = 521/923 (56%), Gaps = 95/923 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 79  KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTE
Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198

Query: 133 CRLQKAAHFLLD---DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           CRL     F LD         VDF PN+D S +EP +L AR P++L+NG  GIAVGMATN
Sbjct: 199 CRLDVGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATN 258

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V
Sbjct: 259 IPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVV 318

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G
Sbjct: 319 MRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSG 378

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRGA   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  
Sbjct: 379 MRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCS 438

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR ++ L++A +R H++ G+ I + NLD V++IIR + N   AR  L++        
Sbjct: 439 VIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------- 491

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  A+L++ L +LT L R    +E  SL  EI + 
Sbjct: 492 -------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKL 532

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLG 546
            ++LS++  +  +I QE   +K++  TPRR+ I +    +++D D I  E+M++ +S  G
Sbjct: 533 NELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKG 592

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++
Sbjct: 593 YVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKI 652

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G +++  L+ F 
Sbjct: 653 PECTRAATGTPLVQLLSLSDGERITSIVPVNE---FGEDQYLVMLTVNGYIKKVPLNAFS 709

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R    R + GV  
Sbjct: 710 AIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALG-RKTRGVLA 768

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD++ SM I+                                      +   N+ 
Sbjct: 769 MKLKEGDKMASMDII-------------------------------------PATSHNMP 791

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E   +   L   ++L +++ G GKR     FR  N +  G++   +       +L AVF 
Sbjct: 792 ETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPD---CSLAAVFV 848

Query: 847 V--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI- 897
           V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++       ++ S   I 
Sbjct: 849 VGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLIS 908

Query: 898 ----------RESEIVDEAESTE 910
                       + ++ EAE  E
Sbjct: 909 AAEEEEEQDPESASLISEAEEPE 931



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 103/278 (37%), Gaps = 33/278 (11%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T IV         +    +  +V ++  GY+K+VPL+ + A R    G   + + 
Sbjct: 672 DGERITSIVP-------VNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTS--GIISIQLA 722

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +  +        V   S  G V      +L     + RG   +  + L +G+++ +
Sbjct: 723 PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRG---VLAMKLKEGDKMAS 779

Query: 633 IMPFPEDESSWNNLY----------VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDS 680
           +   P    +    Y          ++F   +G  +R  L+ F     NR G    KL  
Sbjct: 780 MDIIPATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPP 839

Query: 681 RDEILSVETC--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + +V             +  ++L ++ G   R  +  I + + R++ GV  + L   
Sbjct: 840 DCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRS-RSARGVILMRLEHA 898

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++ S +++  A+ + ++       +S        D E
Sbjct: 899 GKIQSASLISAAEEEEEQDPESASLISEAEEPEKQDPE 936


>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
          Length = 931

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/900 (38%), Positives = 514/900 (57%), Gaps = 84/900 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 79  KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTE
Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198

Query: 133 CRLQKAAHFLLD---DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           CRL     F LD         VDF PN+D S +EP +L AR P++L+NG  GIAVGMATN
Sbjct: 199 CRLDVGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATN 258

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V
Sbjct: 259 IPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVV 318

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G
Sbjct: 319 MRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSG 378

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRGA   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  
Sbjct: 379 MRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCS 438

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR ++ L++A +R H++ G+ I + NLD V++IIR + N   AR  L++        
Sbjct: 439 VIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------- 491

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  A+L++ L +LT L R    +E  SL  EI + 
Sbjct: 492 -------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKL 532

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLG 546
            ++LS++  +  +I QE   +K++  TPRR+ I +    +++D D I  E+M++ +S  G
Sbjct: 533 NELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKG 592

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++
Sbjct: 593 YVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKI 652

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G +++  L+ F 
Sbjct: 653 PECTRAATGTPLVQLLSLSDGERITSIVPVNE---FGEDQYLVMLTVNGYIKKVPLNAFS 709

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R    R + GV  
Sbjct: 710 AIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALG-RKTRGVLA 768

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD++ SM I+                                      +   N+ 
Sbjct: 769 MKLKEGDKMASMDII-------------------------------------PATSHNMP 791

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E   +   L   ++L +++ G GKR     FR  N +  G++   +       +L AVF 
Sbjct: 792 ETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPD---CSLAAVFV 848

Query: 847 V--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++       ++ S   I 
Sbjct: 849 VGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLIS 908


>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A,
           chloroplastic/mitochondrial [Vitis vinifera]
          Length = 911

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/917 (38%), Positives = 526/917 (57%), Gaps = 77/917 (8%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++   +  +  I    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G
Sbjct: 55  VLKEKDGRDGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELG 114

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR  LI+G GNFGSVD DP
Sbjct: 115 LSSRKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADP 174

Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL+      LL DL +DTVDF PN+D S +EP +L AR P +L+NG  GIA
Sbjct: 175 PAAMRYTECRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIA 234

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HN+GE+VD    +I NP+  L  L+E + GPDFPTG +I+G  GI  AY T
Sbjct: 235 VGMATNIPPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRT 294

Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GRG I++RG + +E   +   R  +++ EIPYQ NK++++EKIAELV  K +  I+D+RD
Sbjct: 295 GRGRIIVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRD 354

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G R+VIELKRG+   ++LN+LYR T+LQS FS NM+ +   +P+   L  +L+AF
Sbjct: 355 ESDRSGMRIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAF 414

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR  VV RR ++ L++A++R H++ G+ + + NLD V+R+I+ +P+   A   L    
Sbjct: 415 LDFRCSVVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNE- 473

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AIL++ L R+T L R+    E  SL 
Sbjct: 474 -------------------------FGLSERQAEAILDISLRRITRLEREKFVTESKSLM 508

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVV 540
            +I +  ++LSSR ++L +I+QE + +K+   TPRR+ + +     +ED D I  E+M++
Sbjct: 509 EQISKLQELLSSRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLL 568

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  GYVKR+  + +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V+ 
Sbjct: 569 AVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHS 628

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            + +++P  +  A G  L+ IL L+ GERIT+I+P  E      + +++  T +G +++ 
Sbjct: 629 ARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSEFAE---DQFLLMLTMNGYIKKV 685

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F  I  +G IA++L   DE+  V  CT ++ + + ++ G  +      IR    RN
Sbjct: 686 SLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRALG-RN 744

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + G   + L +GD++ SM I+  A                    I  D E+         
Sbjct: 745 TRGSIAMRLKQGDKMASMDIIPAA--------------------IRKDLEKA-------- 776

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               + + + +   L   ++L VSE G GKR     FR+S  +  G+     S  +    
Sbjct: 777 ----LEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAED---H 829

Query: 841 LVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ 
Sbjct: 830 LAAVFVVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQ 889

Query: 893 SVERIRESEIVDEAEST 909
           S   +  +E   + E  
Sbjct: 890 SASLMSATETETDDEEA 906


>gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 886

 Score =  697 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/898 (36%), Positives = 494/898 (55%), Gaps = 92/898 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  V +  EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M   G   ++ + 
Sbjct: 53  HDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFF 112

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMG++HPHG+++IYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE
Sbjct: 113 KSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTE 172

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF+ NYDG   EP +L +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 173 TKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPP 232

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G   ++ +PD + + L+E     I+GPDFPTGA +LG  GI  AY TGRGSI
Sbjct: 233 HNLREVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSI 292

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307
            +R V  +E+    R  +VVTE+PYQVN   +  KIAELV++ ++  +AD+RDE+  R G
Sbjct: 293 TMRAVVAVEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSGRTG 351

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + +
Sbjct: 352 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQID 411

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT+Y LN+A  RAH+L G   A+  LD+V+ +IR S   E AR  LM+        
Sbjct: 412 VIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK-------- 463

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + E+Q  AILE++L RL  L R  I+++   L   I E 
Sbjct: 464 ------------------LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEY 505

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLG 546
             IL++ +    II  EL  + D+    RRT I+ G   DM  ED I  E+MVVTV+  G
Sbjct: 506 KHILATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGG 565

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YR+Q RGGKG  G  +R +D V   F+ +TH  +LF +  G VY+ K + L
Sbjct: 566 YIKRTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYEL 625

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 A+G+ + N+L++   E I  ++   + + +    Y+V AT+ G +++  L+++ 
Sbjct: 626 QEAGRDAKGQHVANLLAMQPDEEIQQVLDIRDYQVAQ---YLVLATRDGLMKKTALTEYD 682

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVR 725
                G IA+ L   D ++S     +++D+LL ++ G  +RF      +   GR++ GV+
Sbjct: 683 TNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPMGRSTSGVK 742

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++    D ++                                                 
Sbjct: 743 GMTFRGDDTLL------------------------------------------------- 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +  ++ ++  V+E GF KRT++  +R+ NR G GI+   +   +  G L    
Sbjct: 754 ----SASVVGEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKL--QDARGDLAGAL 807

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V + D+I++V   G ++R  V E+    R T GVV    A D+R++S+ +  E  +V
Sbjct: 808 IVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSERNLV 865


>gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
 gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
          Length = 822

 Score =  697 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/842 (42%), Positives = 529/842 (62%), Gaps = 34/842 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKDELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    D  S ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSESSDDAYLFFTTRHGVVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD V+  +++   D         Y K   A      G   +     N +   G +S   
Sbjct: 693 EGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLL 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    ++ ++ +++ G   RT+  +   + RS  G++   + +  +I     V     
Sbjct: 753 TVK---GDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAASEK 809

Query: 850 ND 851
            +
Sbjct: 810 EE 811


>gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
 gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
          Length = 828

 Score =  697 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/898 (38%), Positives = 541/898 (60%), Gaps = 88/898 (9%)

Query: 3   EHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           E+ +  DE   +   IT   ++ E++  +L Y+++VI+ RA+PD+RDGLKPV RRILF M
Sbjct: 4   ENFMEFDENNFDPGHITETELSKEIRRDFLEYSMSVIVARALPDVRDGLKPVQRRILFAM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    +K Y KCARI G+ MGKYHPHG+++IY AL  MAQ+W++R  L++G GNFGS+
Sbjct: 64  NEMNNGPDKPYRKCARIVGDTMGKYHPHGDSSIYGALVYMAQNWNMRETLVDGHGNFGSM 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +  +L DL KDTVD   NYDG  +EP+VL AR+PN+LVNG  
Sbjct: 124 DGDGAAAMRYTEARMSKISVEILRDLEKDTVDMMDNYDGEEKEPMVLPARFPNLLVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL E +D  +A ++NP+I +  LM+ ++GPDFPTG  ILGR+GI+ A
Sbjct: 184 GIAVGMATNVAPHNLKETIDAVIAYMENPEISVTELMQFMKGPDFPTGGYILGRSGIRKA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGSIV+R  +H E+ +  + +IVV EIPY VNKA+++E+I  L REK I  I DLR
Sbjct: 244 FETGRGSIVMRAKTHFEEMANGKMRIVVDEIPYMVNKASLVERIGTLTREKLIDGITDLR 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+ +G RVV+EL++   A+V+LNQLYR T+LQS F VN V L    P    +  +LK 
Sbjct: 304 DESNMKGIRVVVELRKDVQAEVVLNQLYRMTALQSNFGVNNVVLFDGAPRLAGMKELLKG 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ F+ EV+ RRT + L KA+DRAH+L GL IAV  LDEV+  IR S + + A   LM +
Sbjct: 364 YIDFQLEVIRRRTAFELKKAKDRAHILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNK 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q +AIL+++  RLTGL RD I NE   L
Sbjct: 424 --------------------------FPLDEIQAKAILDMQFRRLTGLERDKIENEYQDL 457

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            ++I +  DIL+ + R++ I+K EL  +K +  +PRR+ I++   +MEDED I  ED++V
Sbjct: 458 LLKIADYEDILAHKERVIDIVKNELTEIKAKYGSPRRSEIIDADAEMEDEDLIPVEDIMV 517

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GYVKR+  + Y  Q RGGKG  G+ +  +D +  +  +STH  +L F++ G V++
Sbjct: 518 TLSTNGYVKRLTTNTYSVQNRGGKGIKGMDLNKDDSIESVINMSTHDFLLLFTNKGRVFR 577

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            + + +P  S  ++G  +IN++++++ E++  ++P  +++      ++ F TK G V+R 
Sbjct: 578 LRGFNIPNFSRTSKGIPIINLVNMDKDEKVKAMVPVKKNDEQTK--FLFFVTKKGIVKRT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +S+F  I ++GK A+ L+  D++  V+    + ++L+    G+ VR     +R   GR+
Sbjct: 636 AISEFENIMKNGKKAILLNEDDQLAFVKPTDGQAEVLIAGANGKAVRILEDKVRP-QGRS 694

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G +   G  V+ +A                                         
Sbjct: 695 AHGVKGFN-TDGSSVVGVA----------------------------------------- 712

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                         L+   +LTV+EKG GK +S   FR++NR  KG++A  +++  + G 
Sbjct: 713 ------------TTLEGFNVLTVTEKGIGKVSSIASFRLTNRGSKGVKAAKINE--KTGD 758

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           L+++  V+D+  ++++++ G +IR+ +++I  +SR++ GV +    + ++V +V  + 
Sbjct: 759 LISMKAVSDDQDVMIMTEGGIVIRISLDQIAESSRSSMGVHLIRVDQ-DKVSTVAIVD 815


>gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
 gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
          Length = 862

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/900 (39%), Positives = 552/900 (61%), Gaps = 49/900 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D +L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKIHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR   ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREVMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S   L  +I+ EL  ++++ D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSEILLENLIRDELKEIRNKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  +   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +L +   + +                 ++ +   
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEILLSGSEENLENQE-------------IKNLDDE 682

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             +   S +I         ++   +K   A+ R I   +  +T++K     +  +     
Sbjct: 683 NLENEESASIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAI-- 740

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             ++  EQ IL+VS KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 741 -VIENDEQEILSVSAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51]
          Length = 828

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/913 (39%), Positives = 550/913 (60%), Gaps = 95/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V+ NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNGVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 711 -----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVER 896
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV    
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVVYANS 809

Query: 897 IRESEIVDEAEST 909
             + E  +  E++
Sbjct: 810 CPKEEEPENLENS 822


>gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
 gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
          Length = 929

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/876 (42%), Positives = 541/876 (61%), Gaps = 47/876 (5%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E      E +  G+T++ I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M 
Sbjct: 59  DETEDEGPEPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMK 118

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+  +K Y K AR+ G+V+GKYHPHG+AA+YD++ RM QD+SLR  LI+GQGNFGS+D
Sbjct: 119 ESGITHDKPYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSID 178

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE R+ + A  +L D+ K+TV FRPNYDGS +EP VL A+ PN+L+NG  G
Sbjct: 179 GDEAAAMRYTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTG 238

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HN+ EV+DG + +IDNP+  +  LM +++GPDFPTGA ILG  GI++AY
Sbjct: 239 IAVGMATNMAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGTAGIRSAY 298

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG + IR V+ I++   DREQI+VTE+PYQVNKA M+E IA+LVREK I  I+DLRD
Sbjct: 299 TTGRGPVKIRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRD 358

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR+G RVVIEL +G +A V+LNQLY++T +++ F V  +AL   KP+   L  +L+ +
Sbjct: 359 ESDREGIRVVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQELNLKQLLEIY 418

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + +R E+V +RT Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + AR+ LM   
Sbjct: 419 LEYRMEIVQKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLMDN- 477

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L EVQ +AIL++RL RLTGL    I  EL +L 
Sbjct: 478 -------------------------FTLDEVQAKAILDMRLQRLTGLETKKILEELENLI 512

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E   IL S      II+ ELL +K++    RRT+IV    ++ DED I   D+VVT
Sbjct: 513 KLIAELKKILESDELKYEIIRTELLGLKEKYGDVRRTKIVHYTEEVTDEDLIPEADVVVT 572

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +++ GY+KR+PL  Y  QRRGG+G  G+ M++EDFV +LFI STH  +LFF++ G +Y +
Sbjct: 573 ITNSGYIKRIPLDTYSMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQ 632

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P GS Q+RGKA++N+L L +GE +  ++P  E      + Y++ AT+ G  ++  
Sbjct: 633 KVYEIPEGSRQSRGKAIVNLLELREGEMVNAMIPVKEFAE---DRYLLMATRAGTTKKTP 689

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS+F    ++G IA+ LD  DE++ V     + ++L+ +K G+ +RF    +R    R +
Sbjct: 690 LSEFRNPRKAGIIAVSLDEGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPMG-RTA 748

Query: 722 VGVRGISL-AKGDQVISMAIV------LHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            GVRG+ L    D+V+SM +V      L    +   +          RR   G    +T+
Sbjct: 749 RGVRGMILDGPEDEVVSMDLVDETTTLLSVTENGFGKRTEYSQYPMHRRGGKGVITIVTN 808

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L+N          E        +  ++  S +G   R  + D  I  R+ +G+R  ++  
Sbjct: 809 LRNGFVANVKSVAE--------DDELMITSSEGIIIRVPAKDISIQGRNTQGVRIMNMKS 860

Query: 835 INEIGALVAVFPVNDNDQIILVSD--KGTLIRVPVN 868
            +++  +  +   +++ + + +++   G  + V   
Sbjct: 861 GDKVVGMARIKAEDEDQKQLKITNLKSGKAVSVKSE 896


>gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
 gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
          Length = 831

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/913 (38%), Positives = 524/913 (57%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+       +E  + + SV + DEM+ SY+ YA++VI GRA+PD+RDGLKPVH+RIL+ M
Sbjct: 1   MSSDTSDLPDEVAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + GV  N  + K + I G+ MG +HPHG+ +IYDALARMAQ +S+R  LI+GQGNFGSV
Sbjct: 61  HRSGVTSNASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+   +  +L D+  DTVDF+PNYDG  +EP VL +  PN+L+NG  
Sbjct: 121 DGDPPAAMRYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGEV+D  V +IDNPD  ++ LME ++GPDFPTGA I+GR  I  A
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIVGRNAIHQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R    ++       +IV+TE+P+Q NKA ++++IA+ V +  I  I DLR
Sbjct: 241 YKTGRGRLRVRAEYEVQDD-----RIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELK+ A  +V+ NQL  +  L+  FS+  +AL   +P+  TL  +L+ 
Sbjct: 296 DESDRDGIRVVVELKQNAIPEVVENQLLNHR-LERTFSIISLALVDGQPKVLTLKELLQH 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R +VV RR+++ L++A +RAH+L G   A+ N+D+VV +IR + + + AR  L   
Sbjct: 355 YLDHRRDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARSGL--- 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                   GT   SE Q   I+ ++L  LT L  ++I  E   +
Sbjct: 412 -----------------------QGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDV 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL   S LLG+IK+ELL +K++    RRT+IVE   ++  ED I  ED+ V
Sbjct: 449 TARIERLETILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSEVTREDLIAEEDVFV 508

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            V+   YVKR+P+  + AQ RGGKG  G  ++++D V+ +F  +TH  +L F++ G VY+
Sbjct: 509 VVTEQDYVKRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYR 568

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARGK+ +NIL L++GE IT ++   E E    +  +   T+ G V+R 
Sbjct: 569 LKTYEIPEMSRTARGKSAVNILDLDKGEDITAVITTDEFEE---DESLSMVTQQGYVKRT 625

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              +F  I  +G IA +L+  D+++ V+      D+L++TK G  +RF  +  R    R+
Sbjct: 626 AAKEFENILSTGIIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREMG-RS 684

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D+V+ M        D                                 
Sbjct: 685 ARGVHGIRLDDDDEVVGMVAANGDVDD--------------------------------- 711

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+ +G+GKRT   ++R  +R+GKG+   D+   +  G 
Sbjct: 712 -------------------LLTVTRRGYGKRTKLTEYRSQSRNGKGL--IDIKTGDRNGH 750

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +  +  V ++D ++L+S++G ++R+   +I    R T GV +    +D+RV SV+ I   
Sbjct: 751 VTEIKTVIEDDHLVLMSERGQIMRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIPAE 810

Query: 901 EIV---DEAESTE 910
                 D+AE+ E
Sbjct: 811 AAEAVPDDAETAE 823


>gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
 gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
          Length = 914

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/909 (40%), Positives = 538/909 (59%), Gaps = 54/909 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + S+  E + I  + + + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MQSNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              + Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+  ++GQGNFGS+DGD  
Sbjct: 61  GSRQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL DL K+TVDF PNYD S  EP VL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E+V G + +++N +  L+ +M  I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + IR  +HIE     ++ IV+ E+PYQ NKA ++E+IA+LV+EK+I  I+++RDESDR
Sbjct: 241 GRVKIRAKTHIE-KKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELKR A ++++LN L++ T++++ F V M+A++G +P+ FTLI +LK F+  R
Sbjct: 300 DGIRVVIELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +IR S +   AR  LM R     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q+ AIL++RL+RLTGL R+ I  EL  +  EIK
Sbjct: 415 ---------------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAEIK 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL S   + GIIK ELL +KD+   PR T IV+   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDAILKSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKGR  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N++ L   E+I  I+P  + + S +   +VF T++G V+R  LS+F
Sbjct: 574 IPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKS---LVFFTRNGIVKRTNLSEF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             I   G  A+ LD  D +++         +  +       G  +    +   +      
Sbjct: 631 KNIRSLGIRAISLDEDDTLVTALIAPNSAEEMQNYKGGALSGDDLDGGEAEEILEQTEQD 690

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-----------RLISGDTE 770
           +      L   +  IS  I     A   E     ++M                 I     
Sbjct: 691 I------LEGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGR 744

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
               +K     E          +    Q IL+VS+KG GKRT++ ++R++NR GKG+   
Sbjct: 745 IARGVKGIKFKEKGDEVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICM 804

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            ++  N  G L+ V  V++   ++ ++  G +IRV +  IR A R T GV++ +   D+ 
Sbjct: 805 KLT--NRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNVEGDD- 861

Query: 891 VVSVERIRE 899
           VVS+    +
Sbjct: 862 VVSIATCPK 870



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 13/231 (5%)

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF-SSLGFVYKEKVWRLPIGSPQARGKALI 619
            G +      +  ++   D    ST+ ++LF  +  G   K  + ++      ARG  + 
Sbjct: 693 EGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARG--VK 750

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMK 677
            I    +G+ +        D        ++  ++ G  +R   S++   NR GK  I MK
Sbjct: 751 GIKFKEKGDEVIGAAFILSDMQE-----ILSVSQKGIGKRTTASEYRLTNRGGKGVICMK 805

Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           L +R  E++ V    +E D++  T  G+ +R  + +IR  AGRN+ GV  +++ +GD V+
Sbjct: 806 LTNRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIR-KAGRNTSGVIVVNV-EGDDVV 863

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           S+A    A+   +     +              +  +   +D  ++G   E
Sbjct: 864 SIATCPKAEEGDEGEADELAQDENLLNSNLDSKDSQSDGPSDEILKGGEDE 914


>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
 gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
          Length = 932

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/828 (41%), Positives = 507/828 (61%), Gaps = 34/828 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K A
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK
Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y
Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DE++ IIR S   + A   + +R               
Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER--------------- 490

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ QT AILE+RL RLTGL    I +EL  L   I     +LS   
Sbjct: 491 -----------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQ 539

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+ELL VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ 
Sbjct: 540 LVHEIIKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG
Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L L +GE I+ ++   +     ++ Y++FAT+HG V++  +  + +  R G IA
Sbjct: 660 TAIVNLLPLEKGETISAVIATKD---FPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIA 716

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++SV+       +L+ +  G+ + +    +R    R+++GVRG+++    +V
Sbjct: 717 ISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAMG-RDTMGVRGMNVPPIAKV 775

Query: 736 ISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           + M I     D        Y K              +       +  +G ++     ++ 
Sbjct: 776 LGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA---VMKIV 832

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            ++  I+ +SE+G   RT         RS +G+     +  + + A+ 
Sbjct: 833 AEDDEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA 880


>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 932

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/828 (41%), Positives = 506/828 (61%), Gaps = 34/828 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K A
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG+ A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL
Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK
Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y
Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DE++ IIR S   + A   + +R               
Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER--------------- 490

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ QT AILE+RL RLTGL    I +EL  L   I     +LS   
Sbjct: 491 -----------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQ 539

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+ELL VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ 
Sbjct: 540 LVHEIIKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG
Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L L +GE I+ ++   +     ++ Y++FAT+HG V++  +  + +  R G IA
Sbjct: 660 TAIVNLLPLEKGETISAVIATKD---FPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIA 716

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++SV+       +L+ +  G+ + +    +R    R+++GVRG+++    +V
Sbjct: 717 ISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAMG-RDTMGVRGMNVPPIAKV 775

Query: 736 ISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           + M I     D        Y K              +       +  +G ++     ++ 
Sbjct: 776 LGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA---VMKIV 832

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            ++  I+ +SE+G   RT         RS +G+     +  + + A+ 
Sbjct: 833 AEDDEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA 880


>gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054]
          Length = 867

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/905 (36%), Positives = 497/905 (54%), Gaps = 92/905 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + +  EMQ SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M   G    K Y K
Sbjct: 24  NRVELIELETEMQRSYLDYAMSVIVSRALPEVRDGLKPVHRRVLYAMYDGGYRPEKGYYK 83

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ G+VMG YHPHG+ +IYD L R+AQ WS+R+ L++G GNFGS   DP AA RYTEC
Sbjct: 84  CARVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPLVDGNGNFGSPGNDPAAAMRYTEC 143

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++   A  ++ D+ ++TVDF  NYDG  QEP VL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 144 KMMPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSRIPNLLVNGATGIAVGMATNIPPH 203

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV  G +  +++P    + L+E     I+GPDFPTGA+I+GR GI++AY TGRGSI 
Sbjct: 204 NLREVASGALWALEHPGASNEELLEALVERIKGPDFPTGALIVGRRGIEDAYRTGRGSIT 263

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V  +E+    R+ +V+TE+P+QVN   +  KIA+LV++ RI  IAD+RDES  R G 
Sbjct: 264 MRAVVEVEEIQ-GRQCLVITELPFQVNPDNLALKIADLVKDGRIAGIADVRDESSSRTGQ 322

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +VA + EV
Sbjct: 323 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEV 382

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT + L KA +RAH+L  L  A+  +D V+ +IR S + + AR  LM+         
Sbjct: 383 IVRRTTFRLRKAEERAHILRALLKALDQIDAVIALIRASESADAARTGLMR--------- 433

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + E+Q  AILE++L RL  L    I +E + L  +I E  
Sbjct: 434 -----------------LLDIDELQANAILEMQLRRLAALESARILSEHDELQAKINEYN 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S +R   I+ +EL ++ ++    RR+ ++    D+  ED I  ED+VVT++  GYV
Sbjct: 477 AILASPARQREIVSEELTAIVEKYGDERRSTLIPSDGDLSIEDLIAEEDIVVTITRGGYV 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR    +YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP 
Sbjct: 537 KRTRSDLYRSQKRGGKGVRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVYRAKGYELPD 596

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG+             +  ++ F  +E                            
Sbjct: 597 AGRDARGQH------------VANLLAFQPEEHIT------------------------- 619

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                         ++++V T   +  ++L T+ G   + P+          S G+  I+
Sbjct: 620 --------------QVMAVRTYEDKPYLVLATRGGLVKKTPLKDYD---SPRSGGLIAIN 662

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + ++     ++       D+ +  +   +   R  + D       +  S V+G    E
Sbjct: 663 LRQDEEGQGDELIGAELVSADDDLLLISRKAQSIRFKATDEALRPMSRATSGVKGMAFRE 722

Query: 789 RCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             + L +       ++ T ++ G+ KRTS  ++R+  R G GI+A  + +    G+LV  
Sbjct: 723 DDELLSMNVVRPGTYVFTATDGGYAKRTSVDEYRVQGRGGFGIKAAKIVEG--RGSLVGA 780

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V ++D+I+ ++  G +IR  V+E+R   R T GV + +  K + VV + R  E++  +
Sbjct: 781 LVVEESDEIMAITLSGGVIRTRVSEVRETGRDTMGVQLINLGKRDAVVGMARNAEADEEE 840

Query: 905 EAEST 909
            A+ T
Sbjct: 841 GADDT 845



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 99/246 (40%), Gaps = 14/246 (5%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFV 577
            E +  +        +  +V  +  G VK+ PL  Y + R GG     +   +E   D +
Sbjct: 615 EEHITQVMAVRTYEDKPYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQDEEGQGDEL 674

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               +VS    +L  S      + K     +  P +R  + +  ++  + + + ++    
Sbjct: 675 IGAELVSADDDLLLISRKAQSIRFKATDEAL-RPMSRATSGVKGMAFREDDELLSMNVVR 733

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEN 694
                    YV  AT  G  +R  + ++    R G   K A  ++ R  ++      + +
Sbjct: 734 ------PGTYVFTATDGGYAKRTSVDEYRVQGRGGFGIKAAKIVEGRGSLVGALVVEESD 787

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+  T  G  +R  +S +R   GR+++GV+ I+L K D V+ MA    AD +       
Sbjct: 788 EIMAITLSGGVIRTRVSEVRE-TGRDTMGVQLINLGKRDAVVGMARNAEADEEEGADDTV 846

Query: 755 MKHMSA 760
            +  SA
Sbjct: 847 DETESA 852


>gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 860

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/910 (39%), Positives = 530/910 (58%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L 
Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +L+ 
Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+  +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQRRGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   +D       YV   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDAEQSGG-YVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF     R    R
Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N  GVR I LA+                                              D 
Sbjct: 692 NGHGVRAIRLAE---------------------------------------------GDE 706

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   I  E           +LTV+E G G+R+    +RI+ R GKGIR  DVS      
Sbjct: 707 VVGVCICRE--------GGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDVS----RD 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + AV  V+D D ++L S +G +IR+  NEI + SR   GV +    ++++V+ + R   
Sbjct: 755 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLAR--- 811

Query: 900 SEIVDEAEST 909
           ++  DEA++ 
Sbjct: 812 TDHDDEAQTE 821


>gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5]
 gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5]
          Length = 839

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/871 (38%), Positives = 500/871 (57%), Gaps = 53/871 (6%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E E             I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPETPEPLAAVVQHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDF 225
           R PN+L+NG  GIAVGMAT IP HNL E+       +++P+      L+AL+EI++GPDF
Sbjct: 181 RIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+G+ GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGQAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++ +V  + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  E AR+ L++                           + + EVQ  AIL+++L R
Sbjct: 421 RRSPTVEDARQGLIR--------------------------LLDIDEVQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+IV   
Sbjct: 455 LAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+  P  + +  
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQVA-- 632

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ +L +F      G IA+ L   DE++       E+D+LL +K  Q
Sbjct: 633 -PYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQ 691

Query: 705 CVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQR 762
            +RF  +   +   GR + GV G+  +  D+++++ +V    D        Y K    + 
Sbjct: 692 AIRFNATDEALRPMGRATSGVIGMRFSGEDELLAVEVVREGLDVLVATNGGYAKRTPIEE 751

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-N 821
             + G   +       +   G +       +   E  +  ++  G   RT     R + +
Sbjct: 752 YPVQGRGGKGVLTAKITERRGGL---VGAVVIDPEDELFAITSNGGVIRTPVKPVRRTRD 808

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R+  G++  D+   + +  +      ++ D+
Sbjct: 809 RNTMGVKLMDL--PDGVTIVAIARNADEPDE 837


>gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
 gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
          Length = 871

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/867 (38%), Positives = 498/867 (57%), Gaps = 64/867 (7%)

Query: 1   MTEHIISSDEEE-------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +       EE          +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVH
Sbjct: 1   MADENSPVTPEEVPAVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ 
Sbjct: 61  RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDS 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN
Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G    +++P+   D L+    E I+GPDFPTGA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +++GR GI++AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV+
Sbjct: 241 LVVGRNGIEDAYRTGRGSITMRAVVAVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVK 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + +I  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F  NM+AL    
Sbjct: 300 DGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S 
Sbjct: 360 PRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSN 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E+Q  AILE++L RL  L
Sbjct: 420 TVEIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I  E + L  +I +   IL+S      I+ +EL ++ D+    RR+++V    DM 
Sbjct: 454 ERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFGDDRRSKLVPFEGDMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 VEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP     ARG+ + N+L+    E+I  I+   + +++    Y+
Sbjct: 574 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYDAA---PYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLG 703
           V ATK G V++  L D+      G IA+ L        DE++  E  + E+D+LL ++  
Sbjct: 631 VLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISRKA 690

Query: 704 QCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYM 755
           Q +RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    
Sbjct: 691 QSIRFTATDDALRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVD 750

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           ++    R  +     +I   +   S+ G +  E   E       IL ++  G   RT   
Sbjct: 751 EYRVQGRGGLGIKAAKIVEDRG--SLVGALVVEETDE-------ILAITLGGGVIRTRVN 801

Query: 816 DFRISNRSGKGIRATDVSKINEIGALV 842
           + R + R   G++  ++ K + +  + 
Sbjct: 802 EVRETGRDTMGVQLINLGKRDAVVGIA 828



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 14/267 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD---EDFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +   +   +D + 
Sbjct: 613 EQIAQILAIRDYDAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELI 672

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 673 GAELVSAEDDLLLISRKAQSIRFTATDDAL-RPMGRATSGVKGMSFREGDELLSMNVVR- 730

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 731 -----PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 785

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E     
Sbjct: 786 ILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGTE 844

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVE 782
                     +    E T        E
Sbjct: 845 GAEDDTVEAHAESVAEGTEPSAGEHEE 871



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           G +     + + D ++ +S  G + R   ++ R   R  KGV      +D+ V
Sbjct: 510 GDMSVEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIV 562


>gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074]
 gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074]
 gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074]
          Length = 875

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/869 (39%), Positives = 496/869 (57%), Gaps = 66/869 (7%)

Query: 1   MTEHIISSDEEEE---------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M +    S  E E           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKP
Sbjct: 1   MADENNPSTPEIEIDAEGLPLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKP 60

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L+
Sbjct: 61  VHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLV 120

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  +EP VL AR+
Sbjct: 121 DSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARF 180

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPT 227
           PN+L+NG  GIAVGMATNIP HNL EV  G    ++NP+ D     DAL+E I+GPDFPT
Sbjct: 181 PNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEADPDTLLDALIERIKGPDFPT 240

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
           GA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+L
Sbjct: 241 GALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQVNPDNLAQKIADL 299

Query: 288 VREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           V++ RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL  
Sbjct: 300 VKDARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD 359

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
             P   +L   ++ +VA + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR 
Sbjct: 360 GVPRTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRA 419

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   + AR  LM+                           + + E+Q  AILE++L RL 
Sbjct: 420 SQTVDVARGGLME--------------------------LLEIDEIQANAILEMQLRRLA 453

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            L R  I  E + L  +I E   IL+S  R   II +EL ++ D+    RR+ +V    D
Sbjct: 454 ALERQKIVAEHDDLQAKIDEYNAILASPERQRQIISEELAAIVDKFGEDRRSALVPFDGD 513

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           M  ED I  ED+VVT++  GYVKR     YR+Q+RGGKG  G  ++++D V   F+ +TH
Sbjct: 514 MSIEDLIAEEDIVVTITRGGYVKRTKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTH 573

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + +++    
Sbjct: 574 HWLLFFTNKGRVYRAKAYELPDVGRDARGQHVANLLAFQPDESIAQILAIRDYDAA---P 630

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTK 701
           Y+V  TK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K
Sbjct: 631 YLVLGTKGGLVKKTPLKDYDSPRSGGVIAINLRETPDGSDDELIGAELVSADDDLLLISK 690

Query: 702 LGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERIC 753
             Q +RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R  
Sbjct: 691 KAQSIRFTATDESLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTG 750

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             ++    R  +     +I   + +      + E            IL ++  G   RT 
Sbjct: 751 VDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEE---------TDEILAITLGGGVIRTR 801

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALV 842
             + R + R   G++  ++ K + +  + 
Sbjct: 802 VNEIRETGRDTMGVQLINLGKRDAVVGIA 830



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 105/267 (39%), Gaps = 18/267 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E +  +           +V  +  G VK+ PL  Y + R G  G   + +R+     +D 
Sbjct: 615 ESIAQILAIRDYDAAPYLVLGTKGGLVKKTPLKDYDSPRSG--GVIAINLRETPDGSDDE 672

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++   
Sbjct: 673 LIGAELVSADDDLLLISKKAQSIRFTATDESL-RPMGRATSGVKGMSFREGDELLSMNVV 731

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     +V  AT  G  +R  + ++    R G   K A  ++ R E++      + 
Sbjct: 732 R------PGTFVFTATDGGYAKRTGVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEET 785

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+ +A    A  + +E   
Sbjct: 786 DEILAITLGGGVIRTRVNEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDG 844

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSS 780
            +    A     SG   +  S    + 
Sbjct: 845 DLPADGADGEAASGTDGDTQSPAEGTE 871


>gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
 gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
          Length = 822

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/842 (42%), Positives = 532/842 (63%), Gaps = 34/842 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD V+  +++   D         Y K   A      G   +     N +   G +S   
Sbjct: 693 EGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLL 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    ++ ++ +++ G   RT+  +   + RS  G++   + +  +I     V     
Sbjct: 753 TVK---GDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEK 809

Query: 850 ND 851
            +
Sbjct: 810 EE 811


>gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
 gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
          Length = 932

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/828 (41%), Positives = 507/828 (61%), Gaps = 34/828 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S  +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K A
Sbjct: 86  VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R  G+V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL
Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE +D    ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    
Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK
Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A   V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y
Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA +RAH+L GL IA+ N+DEV+ IIR S   + A   + +R               
Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER--------------- 490

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ QT AILE+RL RLTGL    I +EL  L  +I     +LS   
Sbjct: 491 -----------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQ 539

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +  IIK+EL  VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ 
Sbjct: 540 LVHDIIKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q+RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG
Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A++N+L L +GE I+ ++   +     ++ Y++FAT+HG V++  +  + +  R G IA
Sbjct: 660 TAIVNLLPLEKGETISAVIATKD---FPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIA 716

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++SV+       +L+ +  G+ + +    +R    R+++GVRG+++    +V
Sbjct: 717 ISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAMG-RDTMGVRGMNVPPIAKV 775

Query: 736 ISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           + M I     D        Y K              +       +  +G ++     ++ 
Sbjct: 776 LGMEIAQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA---VMKIV 832

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            ++  I+ +SE+G   RT         RS +G+     +  + + A+ 
Sbjct: 833 AEDDEIMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA 880


>gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 895

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/898 (36%), Positives = 494/898 (55%), Gaps = 92/898 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  V +  EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M   G   ++ + 
Sbjct: 62  HDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFF 121

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMG++HPHG+++IYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE
Sbjct: 122 KSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTE 181

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF+ NYDG   EP +L +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 182 TKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPP 241

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G   ++ +PD + + L+E     I+GPDFPTGA +LG  GI  AY TGRGSI
Sbjct: 242 HNLREVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSI 301

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307
            +R V  +E+    R  +VVTE+PYQVN   +  KIAELV++ ++  +AD+RDE+  R G
Sbjct: 302 TMRAVVAVEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSGRTG 360

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + +
Sbjct: 361 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQID 420

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT+Y LN+A  RAH+L G   A+  LD+V+ +IR S   E AR  LM+        
Sbjct: 421 VIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK-------- 472

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + E+Q  AILE++L RL  L R  I+++   L   I E 
Sbjct: 473 ------------------LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEY 514

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLG 546
             IL++ +    II  EL  + D+    RRT I+ G   DM  ED I  E+MVVTV+  G
Sbjct: 515 NHILATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGG 574

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YR+Q RGGKG  G  +R +D V   F+ +TH  +LF +  G VY+ K + L
Sbjct: 575 YIKRTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYEL 634

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 A+G+ + N+L++   E I  ++   + + +    Y+V AT+ G +++  L+++ 
Sbjct: 635 QEAGRDAKGQHVANLLAMQPDEEIQQVLDIRDYQVAQ---YLVLATRDGLMKKTALTEYD 691

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVR 725
                G IA+ L   D ++S     +++D+LL ++ G  +RF      +   GR++ GV+
Sbjct: 692 TNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPMGRSTSGVK 751

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++    D ++                                                 
Sbjct: 752 GMTFRGDDTLL------------------------------------------------- 762

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                  +  ++ ++  V+E GF KRT++  +R+ NR G GI+   +   +  G L    
Sbjct: 763 ----SASVVGEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKL--QDARGDLAGAL 816

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V + D+I++V   G ++R  V E+    R T GVV    A D+R++S+ +  E  +V
Sbjct: 817 IVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSERNLV 874


>gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2]
 gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2]
          Length = 862

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/901 (40%), Positives = 519/901 (57%), Gaps = 79/901 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV  N  + K 
Sbjct: 18  EVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKS 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + I GE MG YHPHG++AIYD LARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 78  SSIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 137

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LLDD+ KDTVDF+ NYD   QEP VL + +PN+LVNG  GIAVGM+TNIP HN
Sbjct: 138 MSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHN 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  V +I+NPD  +  LME I+GPDFPTGA I+GR  +  AY TGRG + +R   
Sbjct: 198 LGEVVDATVELIENPDATVADLMEHIKGPDFPTGANIVGRNAVHKAYKTGRGRVRVRADY 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            + +  G   +IV+ E+PYQ NKA ++E+IA+ V E +I  I D+RDESDR G RVVIEL
Sbjct: 258 DVFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESDRDGIRVVIEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG  A+V+ NQL     L+S F V  +AL   +P+  TL   L+ ++  R +VV RR++
Sbjct: 315 KRGVMAEVVKNQLL-DNHLESTFGVINLALVDGQPQVLTLKETLEHYLDHRRDVVRRRSE 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L          + L    
Sbjct: 374 YELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVGGEPL---- 429

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   SE Q   I+ ++L  LT +   +I  E   +   I+    IL  +
Sbjct: 430 ----------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQ 479

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S L  +I+ ELL +KDE    RRT  V    ++   D I  ED+VV VS   Y+KR+P+S
Sbjct: 480 SELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVS 539

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R Q RGGKG  G  +++ D V+ +F+ +TH  +L F++ G VY+ K +++P  S  AR
Sbjct: 540 RFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTAR 599

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK+ +N+L  + GE IT ++   + E      Y+   T++G ++R     F  I  +G I
Sbjct: 600 GKSAVNLLDFDDGEEITAVVNCDDLEDIEG--YLTMVTRNGYIKRTGTDRFQNILSTGII 657

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KLD  DE++ VE    E+D+++ T+ G  +RF    +R    R++ GVRGI L +GD 
Sbjct: 658 ATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAMG-RSARGVRGIKL-EGDD 715

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++    +  D                                                 
Sbjct: 716 VVAGVAAIDED------------------------------------------------- 726

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               +ILTV+E G+GKRT    +R  +R+GKG+     ++ N  G + A+  V + D ++
Sbjct: 727 -HHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERN--GPVCAINTVGEGDHLV 783

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-----ESEIVDEAEST 909
           ++SD+G ++R PV +I    R T GV++    + + V SV+ I      E E +D+A+S 
Sbjct: 784 VMSDEGQILRTPVEDISTVGRNTMGVIVMDLDEGDDVASVDVIPAAMTTEGEELDDADSV 843

Query: 910 E 910
           E
Sbjct: 844 E 844


>gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379]
 gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
          Length = 880

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/914 (37%), Positives = 499/914 (54%), Gaps = 106/914 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 27  RVEPVQLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 86

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC+
Sbjct: 87  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 146

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 147 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 206

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G    +++P+   + L    +E I+GPDFPTGA+++GR GI+ AY TGRGSI +
Sbjct: 207 LREVAAGAQWYLEHPEASHEELQDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 266

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R
Sbjct: 267 RAVVAVEEIQ-GRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 325

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+
Sbjct: 326 LVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 385

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 386 VRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM----------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G + + E+Q  AILE++L RL  L    I  E + L  +I E  +
Sbjct: 435 ---------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNE 479

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S ++  GI+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  GYVK
Sbjct: 480 ILASPAKQRGIVSEELAAIVEKFGDDRRSKLVPFEGDMSIEDLIAEEDIVVTISRSGYVK 539

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 540 RTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDA 599

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+             +  ++ F  DE                             
Sbjct: 600 GRDARGQ------------HVANLLAFQPDE----------------------------- 618

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              KIA  L  RD               L TK G   +  +          S GV  I+L
Sbjct: 619 ---KIAQILAIRDYEAVPYLI-------LATKGGLVKKTALKDYD---SPRSGGVIAINL 665

Query: 730 AK-----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            +      D++I   +V   D      +  +   +   R  + D       +  S V+G 
Sbjct: 666 REMPDGGDDELIGAELVSAEDD-----LLLISKKAQSIRFTATDDALRPMGRATSGVKGM 720

Query: 785 ISEERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
              E  + L +       F+ T ++ G+ KRT   ++R+  R G GI+A  + +  + G+
Sbjct: 721 SFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DRGS 778

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--- 897
           LV    V + D+I+ ++  G +IR  VNE+R   R T GV + +  K + VV + R    
Sbjct: 779 LVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEA 838

Query: 898 -RESEIVDEAESTE 910
            RE+E VD  +  E
Sbjct: 839 GREAEEVDGTDDAE 852



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 20/275 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E +  +           ++  +  G VK+  L  Y + R G  G   + +R+     +D 
Sbjct: 618 EKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSG--GVIAINLREMPDGGDDE 675

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++   
Sbjct: 676 LIGAELVSAEDDLLLISKKAQSIRFTATDDAL-RPMGRATSGVKGMSFREGDELLSMNVV 734

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + 
Sbjct: 735 R------PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEET 788

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A   +A+A  +    
Sbjct: 789 DEILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIA--RNAEAGREAEEV 845

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
                +      +        +   +       EE
Sbjct: 846 DGTDDAEGETAAAHAVGTAEGIVEGTEPSTGEHEE 880


>gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
 gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
          Length = 828

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/896 (40%), Positives = 551/896 (61%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++IS    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIS----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+Y AL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EK    +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKMKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDVEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   ++   +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRGI L + D V+  A+V++ D++                               
Sbjct: 686 RNARGVRGIKLNENDFVVG-AVVINDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVTSVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 100/276 (36%), Gaps = 61/276 (22%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVE 688
                   ++   N   VV  +  G V+R  L  + + NR   GK++      D I +  
Sbjct: 491 EAYENIDVEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFF 550

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHAD 745
                + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  MA +   D
Sbjct: 551 VANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD 607

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +  + +                                                 ++
Sbjct: 608 FSDERSLAF------------------------------------------------FTK 619

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIR 864
            G  KRT+  +F  SNRS  GIRA  + + +E   LV+   V+ D   +++ S  G  I+
Sbjct: 620 NGVVKRTNLSEF-GSNRSYSGIRAIVLDEGDE---LVSAKIVDKDAKHLLIASYLGIFIK 675

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            P+ ++R   R  +GV      +++ VV    I + 
Sbjct: 676 FPLEDVREIGRNARGVRGIKLNENDFVVGAVVINDD 711



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L    D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELINDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEAYENIDVEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
 gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
          Length = 894

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/896 (38%), Positives = 538/896 (60%), Gaps = 90/896 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G++ + +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+  + ++ K
Sbjct: 69  NGLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSSQHRK 128

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD  AA RYTE 
Sbjct: 129 SARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMRYTEA 188

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +LD + KDTV+F  NYD S  EPVVL +R+PN+LV+G  GIAVGMAT IP H
Sbjct: 189 RMSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATEIPPH 248

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E ++  +A   NP+I    LME I+GPDFPTGA ILG  GI +AY TG+G I +R  
Sbjct: 249 NLTETINATIAFARNPEITTKELMEHIKGPDFPTGATILGVKGIYDAYETGKGKIPLRSQ 308

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+ +  + +I++TEIPY V K  ++EKI EL ++K +  I +LRDES+R+G R+VI+
Sbjct: 309 AKIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIRIVID 368

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G +A ++LN+LY+ + LQ+  + N+VAL   +P+   L  IL  ++  + EVV RR 
Sbjct: 369 VKKGYNAHILLNKLYQKSYLQTNVNANLVALVHGEPKLLNLKQILSIYLDHQIEVVTRRL 428

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L KA+D+ H+L GL IAV+N+DEVV+II+ S N   A+  L +R             
Sbjct: 429 KFDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKR------------- 475

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ QT+AIL++ L RLTGL  + +  E++ L  EI     IL S
Sbjct: 476 -------------FNLSDRQTKAILDMNLRRLTGLNIEKMNLEIDELNKEISYLKGILES 522

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           R  L+ +I  EL  ++D     RRT+I E  +  + DED I   ++V+T S  GYVKR+ 
Sbjct: 523 REALINLIIDELSEIRDRFGDERRTQIDEFTVSSISDEDLIPVNNIVITTSVKGYVKRMK 582

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  Q RGG G S +   D+D ++ +   +THT ++ F++LG VY+ +  ++P GS Q
Sbjct: 583 LEDYNMQNRGGIGVSTMKTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQ 642

Query: 613 ARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           ++G   INI   L+  +GE++ +++   E     ++ ++V  T+ G +++  LS++  I 
Sbjct: 643 SKGTPFINIIPSLNEKEGEKVVSLLSVDEYN---DDHFLVTITEKGVIKKTALSEYESIR 699

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GK A +L   D +++    T EN+IL+ +     V+F    +R  + RNS GVRGI L
Sbjct: 700 SNGKNAFRLKEDDHLVNAFIVTDENEILIASNGKNVVKFSSLDLRPLS-RNSQGVRGIRL 758

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +  +VI+ +  L  +                                            
Sbjct: 759 DENKKVIAASSDLDGE-------------------------------------------- 774

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    FIL++  KGFGK T S +FR+  R GKG+ A +    ++ G L+    VN 
Sbjct: 775 ---------FILSIGTKGFGKLTHSDEFRLIKRGGKGVTAIN---ADKAGDLIFAKFVNK 822

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ND+ ++++  GT IR+ ++++ + SRATKGV I +  +++ +++VE ++  E +++
Sbjct: 823 NDEALIITSSGTTIRISISQLSVTSRATKGVKIINLRENDEIIAVEIVKTEEEMED 878



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/240 (20%), Positives = 107/240 (44%), Gaps = 14/240 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ +   D    +  +VT++  G +K+  LS Y + R  GK  +   ++++D + + F
Sbjct: 661 EKVVSLLSVDEYNDDHFLVTITEKGVIKKTALSEYESIRSNGK--NAFRLKEDDHLVNAF 718

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           IV+    +L  S+   V K     L   S  ++G   +  + L++ +++          S
Sbjct: 719 IVTDENEILIASNGKNVVKFSSLDLRPLSRNSQG---VRGIRLDENKKVIAA------SS 769

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLT 699
             +  +++     G  +     +F  I R GK   A+  D   +++  +   + ++ L+ 
Sbjct: 770 DLDGEFILSIGTKGFGKLTHSDEFRLIKRGGKGVTAINADKAGDLIFAKFVNKNDEALII 829

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  G  +R  IS + V   R + GV+ I+L + D++I++ IV   +   D      + + 
Sbjct: 830 TSSGTTIRISISQLSV-TSRATKGVKIINLRENDEIIAVEIVKTEEEMEDFIKAMTQEIQ 888


>gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/865 (38%), Positives = 497/865 (57%), Gaps = 62/865 (7%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+        E+       +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MTDENTPVTPLEDVDAAAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV  G    ++NP+   + L+    + I+GPDFPTGA++
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDG 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L   ++ +VA + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  LM                            + + E+Q  AILE++L RL  L R
Sbjct: 420 EIARGGLMD--------------------------LLEIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E  +IL+S  R  GI+ QEL ++ ++    R+T+++    DM  E
Sbjct: 454 QKIVQEHDELQAKISEYNEILASPVRQRGIVSQELAAIVEKFGDDRKTKLIPYEGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP     ARG+ + N+L+    E I  I    + E+     Y+V 
Sbjct: 574 FFTNKGRVYRVKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705
           ATK G V++  L D+      G IA+ L        DE++  E  + ++D+LL ++  Q 
Sbjct: 631 ATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDELIGAELVSSDDDLLLISRKAQS 690

Query: 706 VRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKH 757
           +RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    ++
Sbjct: 691 IRFTATDDTLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEY 750

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               R  +     +I   +   S+ G +  E   E       IL ++  G   RT   + 
Sbjct: 751 RVQGRGGLGIKAAKIVEDRG--SLVGALVVEETDE-------ILAITLSGGVIRTRVNEI 801

Query: 818 RISNRSGKGIRATDVSKINEIGALV 842
           R + R   G++  ++ K + +  + 
Sbjct: 802 RETGRDTMGVQLINLGKRDAVVGIA 826



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 102/263 (38%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +  +++   D + 
Sbjct: 611 ETIAQIRAIRDYEAVPYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDELI 670

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS+   +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 671 GAELVSSDDDLLLISRKAQSIRFTATDDTL-RPMGRATSGVKGMSFREGDELLSMNVVR- 728

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 729 -----PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 783

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 784 ILAITLSGGVIRTRVNEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDV 842

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
                        T+E  +   +
Sbjct: 843 VVDETADGAAPAGTDEGEAPSAE 865


>gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3]
          Length = 860

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/910 (39%), Positives = 530/910 (58%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+P+IDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCIAYIDDPEIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L 
Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +L+ 
Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+  +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQRRGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   +D       YV   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDAEQSGG-YVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF     R    R
Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMG-R 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N  GVR I LA+                                              D 
Sbjct: 692 NGHGVRAIRLAE---------------------------------------------GDE 706

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            V   I  E           +LTV+E G G+R+    +RI+ R GKGIR  DVS      
Sbjct: 707 VVGVCICRE--------GGTVLTVTENGKGRRSDIDTYRITARGGKGIRNYDVS----RD 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + AV  V+D D ++L S +G +IR+  NEI + SR   GV +    ++++V+ + R   
Sbjct: 755 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLAR--- 811

Query: 900 SEIVDEAEST 909
           ++  DEA++ 
Sbjct: 812 TDHDDEAQTE 821


>gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776]
          Length = 938

 Score =  695 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/913 (38%), Positives = 518/913 (56%), Gaps = 24/913 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             +   I  V+I  EM+ SY+TYA++VI+ RA+PD RDGLKP  RRIL  M  + +  N 
Sbjct: 7   TPQPDRILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGPNS 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
             VKCA+I G+  G YHPHG+ +IY  L R+AQ+W++R  LI+ QGNFGS+ G PPAA R
Sbjct: 67  GRVKCAKICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPPAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  +LDDL +DTVD+   YD   +EPVVL +R+PN+LVNG  GIAVGMAT+
Sbjct: 127 YTEARLSAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVGMATS 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV    + ++++P+  +D LME++ GPDFPTG +I GR GI+  Y TGR ++ 
Sbjct: 187 IPPHNLAEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIICGRYGIRQGYLTGRSTLT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ--- 306
           +R  +    T  + + I VTEIPY   +  + EK+ +LVR+ +I  I+ + D +DR    
Sbjct: 247 LRAKTRF-LTEKNTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLTDRTTPA 305

Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               + I LKR A  +VILNQL++Y+ LQS FSV ++AL+G +P+   +  ++  F+  R
Sbjct: 306 WQVCLHIVLKRDADKEVILNQLFQYSPLQSTFSVILLALSGNRPKTMNIKELIGEFIRHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+ R+T++ L +AR R H + GL IA  N+DEV++ IR S +   A+  L      ++
Sbjct: 366 ITVIRRKTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEAKERLQAILVPSA 425

Query: 426 DIKDLIDLID--DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +   +      +     G   T  LS  QT AI+ ++L  L  L ++ +R E   L  +
Sbjct: 426 MVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGEHQRLIED 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTV 542
           I   L +LS  + +  +I++E+  + D+    RRT I  + L D++ ED I  E MVVT+
Sbjct: 486 IFGYLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKEDLIPEEMMVVTL 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KR+P+  Y+AQ RGG+G  G    DED + DLFI STH  +LFF+  G V+ +K
Sbjct: 546 SQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFTDKGRVFWQK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ LP+ S  ++G+AL+N+LSL +GE++ T +     E    N Y+V AT+ G V++  L
Sbjct: 606 VYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFEE---NRYLVMATRAGIVKKTSL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             + +  + G IA+ L   D ++     + + DILL+T  G  +RF  +  R    RN+ 
Sbjct: 663 DAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAMG-RNTS 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L K D+VI M +     AD    +  M      +R   G  E    +++    E
Sbjct: 722 GVRGIKLRKDDEVIGMVV-----ADPAMTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGE 776

Query: 783 GNI--SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             +   EE  + L  +        E+G    +SS  +R   R G G+R   V   N  G 
Sbjct: 777 DGVVADEEIAEALPEETDTEEAAGEEGDESSSSSRSYRRQRRGGLGVRDIRVIPRN--GK 834

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V +  V + D +++V+  G + RV   EI    R T+GV +    + +RV S+ RI   
Sbjct: 835 VVKILAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGDRVASMARIPAD 894

Query: 901 ---EIVDEAESTE 910
              E ++E    E
Sbjct: 895 LCQETIEEKLDIE 907



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 95/316 (30%), Gaps = 57/316 (18%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +    +         +V  +  G VK+  L  Y+   +G  G   + ++D D + +  
Sbjct: 631 EQVATCVNTRTFEENRYLVMATRAGIVKKTSLDAYKRPTKG--GIIAINLKDGDALIEAR 688

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPED 639
           I+S    +L  ++ G        R      +A G+    +  + L + + +  ++     
Sbjct: 689 ILSAQEDILLSTANG-----MAIRFSQADARAMGRNTSGVRGIKLRKDDEVIGMVVADPA 743

Query: 640 ESSWNNLYVVFA--TKHGNVRRNKLSDFIQINRSGK-----IAMKLDS------------ 680
            +        +   T  G +    + + +     G      IA  L              
Sbjct: 744 MTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGEDGVVADEEIAEALPEETDTEEAAGEEG 803

Query: 681 ----------------------------RDEILSVETCTQENDILLTTKLGQCVRFPISA 712
                                         +++ +    + + +L+ T  G+  R   + 
Sbjct: 804 DESSSSSRSYRRQRRGGLGVRDIRVIPRNGKVVKILAVQEGDHVLIVTAGGKIQRVRAAE 863

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           I     RN+ GVR I L +GD+V SMA +                  AQ   I  D    
Sbjct: 864 ISEIG-RNTQGVRVIKLTEGDRVASMARIPADLCQETIEEKLDIEPKAQVEDIPADQANP 922

Query: 773 TSLKNDSSVEGNISEE 788
                    +   S E
Sbjct: 923 PETSTLGDEQTTDSGE 938


>gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni]
          Length = 844

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/871 (39%), Positives = 530/871 (60%), Gaps = 48/871 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  E  VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E I  I+P  + + S +   + F TK+G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEEIMAIIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  D +++     ++ D +  +   + +                     +L 
Sbjct: 636 VGVRAINLDENDGLVTAIIVQRDEDEIFVSGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   VL A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKVLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
             ++ ++  G +IRV +  IR A R T GV+
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGVI 828



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 98/302 (32%), Gaps = 96/302 (31%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  T    + ++  T
Sbjct: 502 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 561

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + +C+   
Sbjct: 562 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLINLQAEEEI--MAIIPTTDFDESKSLCF--- 615

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                         ++ G  KRT+  ++
Sbjct: 616 ---------------------------------------------FTKNGIVKRTNLSEY 630

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL---------------------- 855
              N    G+RA ++ + +  G + A+    D D+I +                      
Sbjct: 631 --QNIRSVGVRAINLDEND--GLVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLEN 686

Query: 856 -------------VSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
                        V+ KG  I+ P+ ++R   R ++GV       K++ +V    I   E
Sbjct: 687 EESVSTQGKVLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDE 746

Query: 902 IV 903
             
Sbjct: 747 QE 748


>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/891 (40%), Positives = 524/891 (58%), Gaps = 86/891 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV     Y K ARI 
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL+  
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ +L ++TV+F PNYD S QEP VL AR P +L+NG  GIAVGMATNIP HN+ E+
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A  TGRGSIV+RGV+ IE+
Sbjct: 190 IDALLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVADIEE 249

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  DR  I++ EIPYQVNKA ++E+IAELVRE  +  IAD+RDESDR G RVVI+LKR 
Sbjct: 250 STRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+  V+LN+LY  T LQ+ F  N VAL   +P   +L   L  F++FR++VV RRT + L
Sbjct: 310 ANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALAHFLSFRQDVVTRRTLFRL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KARDR H+L GL  A+  +D+++ +IR S +P+ AR  L+++                 
Sbjct: 370 RKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q RAIL++RL RLT L RD I  E   + + I    +IL SRSRL
Sbjct: 413 ---------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRVLILGLEEILGSRSRL 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++E +++++     R+TRIV    ++  E  I  +   +T+++ GY+KRV    Y 
Sbjct: 464 MAVIREEFMALRENYGDARKTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYP 523

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKGRSGV ++++D V      + H ++LFF+ +G VY+ K   +P     ARGK 
Sbjct: 524 TQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKP 583

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +   L L   E++T ++     E       +VF T +G ++R  LS +  I +SG IA+ 
Sbjct: 584 IRGFLPLAPEEKVTRMLNVASFE---GERSLVFVTVNGIIKRTALSAYSSIRQSGIIALT 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D +  V     ++ +L+ T+ G  + FPI  +    GR + GVR I L + D+V  
Sbjct: 641 LREGDRLAQVLVAEADSHVLVATRRGMAILFPIHEVTE-QGRTASGVRAIRLREEDRVAD 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             IV   D                                                    
Sbjct: 700 AEIVTETDP--------------------------------------------------- 708

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +  V+EKG+GKR     FR  +R G G++ +  ++  +IGA+V++    + D + +++
Sbjct: 709 --VAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAE--KIGAVVSLVKAGNTDDLTIIT 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            KG   RV  NE+R   R+ +GV++   A D+ +VS       E+  E E+
Sbjct: 765 SKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVSAVVSPPREVEGEQEN 815


>gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334]
 gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/841 (42%), Positives = 531/841 (63%), Gaps = 34/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  S +R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMS-RGATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD V+  +++   D         Y K   A      G   +     N +   G++S   
Sbjct: 693 EGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGSLSGLL 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    ++ ++ +++ G   RT+  +   + RS  G++   + +  +I     V    +
Sbjct: 753 TVK---GDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAEKE 809

Query: 850 N 850
            
Sbjct: 810 E 810


>gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
 gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
          Length = 839

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/871 (38%), Positives = 500/871 (57%), Gaps = 53/871 (6%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E +             I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPDVPETAGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ W+LR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L+  A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDF 225
           R PN+LVNG  GIAVGMAT IP HNL E+       +++P+      L+AL+ I++GPDF
Sbjct: 181 RIPNLLVNGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+GR GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGRAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++ +VA + EV+ RRT + L KA +RAH+L GLA A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRYYVAHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  + AR+ L++                           + + E+Q  AIL+++L R
Sbjct: 421 RRSPTVDDARQGLIR--------------------------LLEIDEIQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+I+   
Sbjct: 455 LAALERQRILDDLAKLELEIADFKDILAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  +  YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+   + + +  
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQVA-- 632

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ +L +F      G IA+ L   DE++       E D+LL +K   
Sbjct: 633 -PYLVLATKNGVVKKTRLEEFDSNRSGGIIAINLREDDELVGAALVAPEQDLLLVSKNAL 691

Query: 705 CVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQR 762
            +RF  +   +   GR + GV G+  ++ D++++M +V H  D        Y K    + 
Sbjct: 692 AIRFNATDEALRPMGRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIEE 751

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-N 821
             + G   +       +   G +       +   +  +  ++  G   RT     R + +
Sbjct: 752 YPVQGRGGKGVLTAKITERRGGL---VGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRD 808

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R+  G++  D+   + +  +      ++ D+
Sbjct: 809 RNTMGVKLMDL--PDGVTIVAIARNADEPDE 837


>gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 879

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/864 (38%), Positives = 498/864 (57%), Gaps = 64/864 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 26  RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 85

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC+
Sbjct: 86  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 145

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 146 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 205

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G    +++P+   + L+    E I+GPDFPTGA+++GR GI+ AY TGRGSI +
Sbjct: 206 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 265

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+    R+ +VVTE+P+Q N   + +KIA+LV++ ++  IAD+RDE S R G R
Sbjct: 266 RAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+
Sbjct: 325 LVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 385 VRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM----------- 433

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G + + E+Q  AILE++L RL  L    I  E + L  +I E  +
Sbjct: 434 ---------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNE 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S ++   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVK
Sbjct: 479 ILASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 539 RTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+ + N+L+    E+I  I+   + E+     Y++ ATK G V++  L D+    
Sbjct: 599 GRDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPR 655

Query: 670 RSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
             G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +   +   GR + G
Sbjct: 656 SGGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSG 715

Query: 724 VRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V+G+S  +GD+++SM +V          D  Y +R    ++    R  +     +I   +
Sbjct: 716 VKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDR 775

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              S+ G +  E   E       IL ++  G   RT   + R + R   G++  ++ K +
Sbjct: 776 G--SLVGALVVEETDE-------ILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRD 826

Query: 837 EIGALVA-------VFPVNDNDQI 853
            +  +            V+  D +
Sbjct: 827 AVVGIARNAEAGREAEEVDGADDV 850



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 99/266 (37%), Gaps = 14/266 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK---GRSGVVMRDEDFVT 578
           E +  +           ++  +  G VK+  L  Y + R GG        +    +D + 
Sbjct: 617 EKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDELI 676

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 677 GAELVSAEDDLLLISKKAQSIRFTATDDAL-RPMGRATSGVKGMSFREGDELLSMNVVR- 734

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 735 -----PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 789

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E     
Sbjct: 790 ILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGAD 848

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSV 781
                   + +    E T    + S 
Sbjct: 849 DVDGEPAEVHAEGVAEGTVEGTEPST 874


>gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 876

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/914 (37%), Positives = 493/914 (53%), Gaps = 106/914 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 19  RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 78

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC+
Sbjct: 79  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 138

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  +L D+ ++TVDF+ NYDG  QEP VL +R+PN+L+NG  GIAVGMATNIP HN
Sbjct: 139 LMTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G    +++PD   + L+    E I+GPDFPTGA+++GR GI+ AY TGRGSI +
Sbjct: 199 LREVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 258

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R
Sbjct: 259 RAVVEVEEIHN-RQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 317

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 318 LVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVI 377

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 378 VRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLMD---------- 427

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q  AILE++L RL  L R  I  E + L  +I E   
Sbjct: 428 ----------------LLQIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNA 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  GYVK
Sbjct: 472 ILASPERQRAIVSEELAALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 532 RTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDA 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+             +  ++ F  DE                             
Sbjct: 592 GRDARGQ------------HVANLLAFQPDEQI--------------------------- 612

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                        +IL++        ++L TK G   +  +          S GV  I+L
Sbjct: 613 ------------AQILAIRDYEAAPYLVLATKAGLVKKTALKDYD---SPRSGGVIAINL 657

Query: 730 AK-----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            +      D++I   +V   D      +  +   +   R  + D       +  S V+G 
Sbjct: 658 RETEDGSDDELIGAELVSSEDD-----LLLISKKAQSIRFTATDDALRPMGRATSGVKGM 712

Query: 785 ----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                 E     +     F+ T ++ G+ KRT   ++R+  R G GI+A  + +  + G+
Sbjct: 713 SFRADDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DRGS 770

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-- 898
           LV    V + D+I+ ++  G +IR  VNE+R   R T GV + +  K + VV + R    
Sbjct: 771 LVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEA 830

Query: 899 --ESEIVDEAESTE 910
             E + +DEA   E
Sbjct: 831 GSEDDEIDEAVDAE 844



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 101/274 (36%), Gaps = 14/274 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+  L  Y + R GG     +   ++   D + 
Sbjct: 610 EQIAQILAIRDYEAAPYLVLATKAGLVKKTALKDYDSPRSGGVIAINLRETEDGSDDELI 669

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS+   +L  S      +       +  P  R  + +  +S    + + ++     
Sbjct: 670 GAELVSSEDDLLLISKKAQSIRFTATDDAL-RPMGRATSGVKGMSFRADDELLSMNVVR- 727

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 728 -----PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 782

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A ++ DE    +
Sbjct: 783 ILAITLSGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGSEDDEIDEAV 841

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
               A     +         +     E +  E  
Sbjct: 842 DAEGAVEASEAAVETVAVETEAVEGTEPSAGEHE 875


>gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/842 (42%), Positives = 530/842 (62%), Gaps = 34/842 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD V+  +++   D         Y K   A      G   +     N +   G +S   
Sbjct: 693 EGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLL 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    ++ ++ +++ G   RT+  +   + RS  G++   + +  +I     V     
Sbjct: 753 TVK---GDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEK 809

Query: 850 ND 851
            +
Sbjct: 810 EE 811


>gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
 gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
          Length = 855

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/859 (40%), Positives = 527/859 (61%), Gaps = 48/859 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K +
Sbjct: 3   EQENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+S R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  KKSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  L+ D+GK+T+D++PN+DG  +EPVVL AR+PN LVNG  GIAVGMATN+P
Sbjct: 123 EARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A+  NPDI +  LM+ I GPDFPT   ILGR+GI+ AY TGRGSI +R
Sbjct: 183 PHNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSITMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     RE+I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+V
Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R A+A VILN LY+ T +Q+ F VNM+AL G +P+   +   +  ++  ++EVV R
Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGRPKTLNIKQAIYYYIEHQKEVVRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL +A+ +LDEV+ IIR +   + AR +L+ R           
Sbjct: 363 RTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS  QT+AIL++RL RLTGL R+ I  E   +   I+E   IL
Sbjct: 412 ---------------FGLSTEQTQAILDMRLQRLTGLEREKIEGEYREVKALIEELRAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                LL II+ EL+ +K+     RRT I   ++++EDED I   DM++T++  GY+K +
Sbjct: 457 GDEELLLDIIRNELIEIKERYGDARRTVIRTDIVELEDEDLIPVRDMMITLTSEGYIKSI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   YR QRRGG+G+ G+   DEDFV  L   STH ++LFF++ G V++ K + +P  S 
Sbjct: 517 PSDSYRTQRRGGRGKQGMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFP-----------------EDESSWNNLYVVFATKH 654
            A+G  +IN+L +++GE++ T++P                    +E +   L +VF TK 
Sbjct: 577 TAKGMPIINLLQIDKGEKVETMIPVDFNSYLANQTVAEETQDESEEVADEQLSLVFITKE 636

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G ++R+ LS + +IN++G  A+ L+  DE+++V     ++++L+ T+ G  +RFP+    
Sbjct: 637 GLIKRSPLSAYARINKNGLRAISLNETDELVTVRLAKSDDEMLIVTRQGMSIRFPLEGEV 696

Query: 715 VFAGRNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
              GR + GVR I L K D  V+SM IV        + +   +    +R  +     +  
Sbjct: 697 RSMGRTARGVRAIRLKKEDDLVVSMEIVRTTQ----DVLIITEKGYGKRTAMEQFRTQGR 752

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                  ++ +        +  ++  I+ ++E G   R  S       RS +G++  ++ 
Sbjct: 753 GGSGIIGIKTDRGTVVGMRVVDEDDDIMLMTELGVAIRIDSQTISQMGRSTRGVKVMNIE 812

Query: 834 KINEIGALVAVFPVNDNDQ 852
           + + +  +  +      ++
Sbjct: 813 EGDRLATIAKLKKDELEEE 831


>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
 gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/855 (41%), Positives = 523/855 (61%), Gaps = 48/855 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  +      I + +I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL+ M  +G+
Sbjct: 1   MDENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + K ARI GEV+GKYHPHG+ A+Y+ + RMAQD+S R  L++G GNFGSVDGD  
Sbjct: 61  VADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  LL D+ KDTVD+  NYDG   EPVVL  R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATG 244
           MATNIP HNLGE +D   AV+DNPDI +  LME  I GPDFPTG  ILGR GIK AY TG
Sbjct: 181 MATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYILGRAGIKQAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI+IR    +E     ++QI+VTEIPY VNKAA++EKIA LVREK I  I DLRDES+
Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            +G R+VIEL++   +DVILNQLYR TSLQ+ F VNM+ L    P++  L  +LK ++  
Sbjct: 301 MEGIRIVIELRKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNAPQQLGLKDVLKCYLDH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V VRRT++ L KA DRAH+L GL IA+ ++D ++ +IR S +   A   LM+     
Sbjct: 361 QIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLMEN---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE+Q +AIL+++  RLTGL R  I  E +SL  +I
Sbjct: 417 ----------------------FGLSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL++ SR+L II+ EL  +K++ +  RR+ I++  +DM+DED I +ED+V+T++ 
Sbjct: 455 TDLKDILNNHSRVLEIIRSELTEIKEKYNDKRRSEIIDAEIDMQDEDLIPQEDVVITMTV 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVKR+P+  YR Q RGGKG  G+ M ++D V     + TH  +L F++ G VY+ K +
Sbjct: 515 NGYVKRIPVDTYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+ S  ++G  ++N+L+L++ E++  ++P   +  +    ++ F T  G V+R  + +
Sbjct: 575 QVPLASRTSKGIPIVNLLNLDKDEKVLAMVPV--ERENSPAKFLFFVTAQGIVKRVPIEE 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I +SGKIA+ L   DE++S +  T  + IL+    GQ +RF  + +R    R + GV
Sbjct: 633 FENIRQSGKIAINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPMG-RTATGV 691

Query: 725 RGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +G ++  G +VI M        I+   +  Y ++     +    R      T ++T    
Sbjct: 692 KGFNV-NGSRVIGMTTDFEGQYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKNG 750

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  ++          ++  L ++ +G   R S     + +R+ +G++   V + N+
Sbjct: 751 PLVFLRAVN---------GDEDCLIMTNEGIVIRISLEKVSVYSRNTQGVKLISV-EDNQ 800

Query: 838 IGALVAVFPVNDNDQ 852
             + VA+   +++D+
Sbjct: 801 TVSTVAIVYKSEDDE 815


>gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 949

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/864 (42%), Positives = 537/864 (62%), Gaps = 42/864 (4%)

Query: 7   SSDEEEEKGITS-------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           +SD+ E+KGI         + I +EM+ SY+ YA++VI+GRA+PD RDG KPVHRR+LF 
Sbjct: 57  ASDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFA 116

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G+  +K Y K AR+ G+V+GKYHPHG+ A+YD + RM QD+SLR  LI+GQGNFGS
Sbjct: 117 MKEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGS 176

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE R+ + A  +L D+ K+TV F PNYDGS +EP VL A+ PN+LVNG 
Sbjct: 177 IDGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGS 236

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HN+GEV+DG + +I+NPDI +  LM +I+GPDFPTGA ILG  GIK+
Sbjct: 237 TGIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGTAGIKS 296

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG++ IR V+ I++   DR++I+VTE+PYQVNKA M+E IA+LVREK I+ I+DL
Sbjct: 297 AYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISDL 356

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIEL RG +  V+LNQLY++T +++ F V  +AL   KP+   L  +L+
Sbjct: 357 RDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVDGKPKELNLKELLE 416

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ +R E++ +RT Y L K+ +RAH+L GL IA+ N+DEVV +I+ S N + A++ LM+
Sbjct: 417 IYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLME 476

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E+Q++AIL++RL RLTGL    +  EL  
Sbjct: 477 N--------------------------FALDEIQSKAILDMRLQRLTGLETKKVLEELEG 510

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   I+ S      II+ ELL +K++    RRT+I++   ++ +ED I  E++V
Sbjct: 511 LVKLIGELNKIIESDELKYEIIRNELLELKEKYGDARRTKIMQAASEVREEDLIHEEEVV 570

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+++ GY+KR+PL  Y  Q RGG+G  G+ M++EDFV +LFI STH  +LFF++LG +Y
Sbjct: 571 VTITNGGYIKRIPLKTYTMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRLY 630

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            EKV+ +P GS Q+RGKA++N+L L  GE I  ++P  E +    N Y++ AT+ G +++
Sbjct: 631 WEKVYEIPEGSRQSRGKAIVNLLELKGGETINAMIPVKEFD---KNHYLLMATREGTIKK 687

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F    ++G IA+ LD  DE++ V     + ++L+ +K G+ +RF    +R    R
Sbjct: 688 TPLSEFKNPRKAGIIAVTLDEDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPMG-R 746

Query: 720 NSVGVRGISL-AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            + GVRG++L    D+V+S+ IV             + K     +        +      
Sbjct: 747 TARGVRGMALDGPEDEVVSLDIVDETTTLLTVTENGFGKRTEYSQYPAHRRGGKGVITII 806

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            +   G +S  R       +  ++  S  G   R  + D  I  R+ +G+R  ++   ++
Sbjct: 807 TNERNGPVSRVRSV---ADDDELIFTSADGIIIRIPAKDISIQGRNTQGVRIINLKSGDK 863

Query: 838 IGALVAVFPVNDNDQIILVSDKGT 861
           +  +  +        + L + KG 
Sbjct: 864 VAGIARIQNGKAEKNLKLTAFKGK 887


>gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 828

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/861 (39%), Positives = 525/861 (60%), Gaps = 60/861 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+ I         +  V +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MDENTI------FDKVHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 55  IELNNGPDKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  LL D+GKDTV+F PN+D + +EP VL +R+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQ 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV++  V +ID     N   D++ L++I++GPDFPTGA ILG+ 
Sbjct: 175 GIAVGMATNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATILGKA 234

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI  AY TGRG I +R V+ IE  +  +++IVVTE+PY VNKA +++KIAELV++K++  
Sbjct: 235 GISQAYRTGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDG 294

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I ++RDESDR G R+ IEL+R A+A+V+LN+L+++T +Q  F V M++L   +P+   L 
Sbjct: 295 ITEIRDESDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLVNNEPKILNLF 354

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +++VV RRTKY LNKA +RAH+L GL IA  N+DEV++IIR + N   A+ 
Sbjct: 355 DMLNYYLEHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKT 414

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            L++ Q +AI+++RL  L GL R  +  
Sbjct: 415 QLMER--------------------------FALTDAQAQAIVDMRLRALNGLERAKLEK 448

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E N L  +I E   IL+    LLG+IK EL+ ++D+    RRT I   + D+  ED I R
Sbjct: 449 EYNELMAKITELKAILADEKLLLGVIKDELVLIRDKYGDERRTSIGFDVDDISMEDLIPR 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E+ ++T++ LGY+KR+ +  +++Q RGGKG  G+   DED++ +LF+ ++H  ++FF+++
Sbjct: 509 ENTIITMTKLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNM 568

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  ARG A++N++ L   E+IT ++P  E +    + Y+  ATK G
Sbjct: 569 GRVYRMKAYEIPESSRTARGTAIVNLIQLQPEEKITAVIPINEYKE---DHYLFMATKSG 625

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+++ + ++  I ++G +A+ L   DE++ V+    + D+ L TK GQC+RF  + +R 
Sbjct: 626 VVKKSPIMEYANIRKTGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRS 685

Query: 716 FAGRNSVGVRGISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGD 768
              R ++GVRGI+L   D+VI M       A++  ++    +R    +     R      
Sbjct: 686 IG-RTAMGVRGINLDGDDEVIGMQLNSQGEALLFVSENGMGKRTAMTEFTPQHRGGKGIR 744

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +IT    D      + EE           ++ ++ +G   R       +  R+  G++
Sbjct: 745 CYKITEKTGDVVGVKAVDEE---------NEVMMITTEGVVIRMGVDGISMLGRNTSGVK 795

Query: 829 ATDVSKINEIGALVAVFPVND 849
             ++   ++   + ++  V D
Sbjct: 796 LMNL---DDNVIVASLAKVRD 813


>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
 gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
          Length = 870

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/841 (40%), Positives = 504/841 (59%), Gaps = 35/841 (4%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E    S  E    +    +  +M+ S++ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +
Sbjct: 31  ETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNE 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  N+ + K AR  G+V+GKYHPHG+ A+YD + RMAQ +S+ + L++G GNFGS+DG
Sbjct: 91  SGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDG 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL + A  LL DL K+TVD++PNYD S +EP VL AR+PN+LVNG  GI
Sbjct: 151 DSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNL EV+D    VIDNPD+ LD L++++ GPDFPTGA I+GR GI+ AY 
Sbjct: 211 AVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIMGREGIREAYE 270

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R    I +T   R  I V EIPY VN+  +LEKI EL+R+K++ +I+++ D 
Sbjct: 271 TGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHDG 330

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +DR G  ++IELK+ A   V+LN+LY++T +Q+ F  NM+AL    P   +L  IL  ++
Sbjct: 331 ADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDDVPHTLSLKQILSYYI 390

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A + +V+ RRT+Y L KA +RAH++ GL IA+ N+DEV+ IIR S   + AR  L++   
Sbjct: 391 AHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIEN-- 448

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L E+Q  AILE+RL RLTGL  D +  EL  L  
Sbjct: 449 ------------------------FNLDEIQANAILEMRLRRLTGLEYDKLVEELRDLEE 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVT 541
            I     +L   + +  IIK+E+  +K +  + RRT+I      D++ ED I  EDMVVT
Sbjct: 485 RIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDIDVEDLIADEDMVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  GYVKR+PL+ YR Q+RGGKG  GV ++++DFV  LF+ STH  +LFFSS G VY+ 
Sbjct: 545 VTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGKVYRL 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP     ARG A++N+LSL +GE I  ++   +        Y++FAT  G V++  
Sbjct: 605 KVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKD---FPKEEYLMFATSAGMVKKTS 661

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +S + +  R G IA+ L+  DE++SV+  +    + + +  G+ + +  S  R    R++
Sbjct: 662 MSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSAGKAIVWDESEARAMG-RDT 720

Query: 722 VGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            GVRG+ +   + V+ M+I    AD        Y K  S     +     +       + 
Sbjct: 721 KGVRGMKVPADEHVLEMSIAKPQADLFVITEKGYGKRTSVYEYPLHHRGGQGVYTITMTR 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            +G ++     ++   ++ ++ ++ +G   RT         RS +G+R  +V   +++ A
Sbjct: 781 KKGELA---AAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKDKVRA 837

Query: 841 L 841
           +
Sbjct: 838 V 838



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 101/305 (33%), Gaps = 58/305 (19%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIA--MKLDSRDEILSVETCTQENDILLTTK 701
           +   VV  TK G V+R  L+ + Q  R GK    + L   D +  +   +    +L  + 
Sbjct: 538 DEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSS 597

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  R  +  +   AGR++ G   ++L   ++  S+A V+       E        +  
Sbjct: 598 KGKVYRLKVYEL-PEAGRHARGTAIVNLLSLEKGESIAAVIATKDFPKEEYLMFATSAGM 656

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-ILTVSEKGFGKRTSSYDFRIS 820
            +  S    + T      ++  N  +E     ++ +   +  VS  G        + R  
Sbjct: 657 VKKTSMSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSAGKAIVWDESEARAM 716

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK--------------------- 859
            R  KG+R   V        ++ +        + ++++K                     
Sbjct: 717 GRDTKGVRGMKVPADE---HVLEMSIAKPQADLFVITEKGYGKRTSVYEYPLHHRGGQGV 773

Query: 860 ------------------------------GTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                                         G ++R PV  +    R+T+GV I +    +
Sbjct: 774 YTITMTRKKGELAAAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKD 833

Query: 890 RVVSV 894
           +V +V
Sbjct: 834 KVRAV 838



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 98/231 (42%), Gaps = 22/231 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ DE++          I+ ++K  +  R  +          +  +  + L    
Sbjct: 418 LLIALDNIDEVI---------HIIRSSKTDKEARDRLIENFNLDEIQANAILEMRLRRLT 468

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQ--RRLISGDTEEITSLKNDSSVEGNIS 786
             + D+++     L     Y +R+   +++  Q  +  +    ++ +S +       +  
Sbjct: 469 GLEYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAK 528

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +   ++L   E  ++TV++ G+ KR     +R   R GKG++  ++ + + +  L   F 
Sbjct: 529 DIDVEDLIADEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHL---FV 585

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
            + +  ++  S KG + R+ V E+  A R  +G   V + S  K E + +V
Sbjct: 586 ASTHAYMLFFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAV 636



 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +       +E+ ++  +  G VK+  +S+Y   RR   G   + + D D +  + 
Sbjct: 631 ESIAAVIATKDFPKEEYLMFATSAGMVKKTSMSLYDRTRR--DGLIAINLNDGDELISVK 688

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            VS    V   SS G      VW         R    +  + +   E +       E   
Sbjct: 689 RVSDGEKVFMVSSAGKA---IVWDESEARAMGRDTKGVRGMKVPADEHVL------EMSI 739

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILL 698
           +     +   T+ G  +R  + ++   +R G+          + E+ + +  T + ++++
Sbjct: 740 AKPQADLFVITEKGYGKRTSVYEYPLHHRGGQGVYTITMTRKKGELAAAKIVTDDEELII 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            T  G  VR P+       GR++ GVR +++   D+V ++ I         +R
Sbjct: 800 ITNEGVVVRTPV-KGVSKLGRSTQGVRIMNVVDKDKVRAVGIADDGKGRKHKR 851


>gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F]
          Length = 846

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/881 (38%), Positives = 515/881 (58%), Gaps = 86/881 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 78  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+  AH++ GL IA  N+D+V+ II+ + + E A+  LM +               
Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTK--------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL  L+GL R++++ EL  L   IK+  +IL ++ 
Sbjct: 423 -----------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II  +L  +  +    RRT+I  GL   +++E  I  E +V+T S  GY+KR+P+S
Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G  G+   ++D V  L + STH+ +LFF++ G VY+ +  ++P+GS  ++
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN++S+ + E++ +++   + +S     Y  F+TK G V+R K S+F +I  +GKI
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDYDSG----YFFFSTKKGLVKRVKASEFSRIQNNGKI 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KL   D +  V     + +I +    G  VRF    +R    R + GV G+       
Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMG-RTAQGVIGVKFKN--- 703

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                                     ND  +  + S E      
Sbjct: 704 -----------------------------------------PNDEVIGLSSSHE------ 716

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V EKG GK T   ++R++NR  KG+    V+   + G ++    VN N++++
Sbjct: 717 --GSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEELL 772

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++S  G ++RVP+ E+    R T GV + S  + E + SV 
Sbjct: 773 MISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVA 813


>gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
 gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
          Length = 822

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/842 (42%), Positives = 531/842 (63%), Gaps = 34/842 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD V+  +++   D         Y K   A      G   +     N +   G +S   
Sbjct: 693 EGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLL 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    ++ ++ +++ G   RT+  +   + RS  G++   + +  +I     V     
Sbjct: 753 TVK---GDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEK 809

Query: 850 ND 851
            +
Sbjct: 810 EE 811


>gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32]
          Length = 828

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/896 (40%), Positives = 545/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   ++   +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNEDDFVVGAVVISD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 711 -----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 100/263 (38%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + + +E   LV+   V+ D   +++ S  G  I+ P+ ++R   R T
Sbjct: 632 GSNRSYSGIRAIVLDEGDE---LVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREIGRTT 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV+     +D+ VV    I + 
Sbjct: 689 RGVIGIRLNEDDFVVGAVVISDD 711



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L    D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S    + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSPRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 855

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/864 (38%), Positives = 498/864 (57%), Gaps = 64/864 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 2   RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC+
Sbjct: 62  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 122 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G    +++P+   + L+    E I+GPDFPTGA+++GR GI+ AY TGRGSI +
Sbjct: 182 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+    R+ +VVTE+P+Q N   + +KIA+LV++ ++  IAD+RDE S R G R
Sbjct: 242 RAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+
Sbjct: 301 LVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 361 VRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM----------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G + + E+Q  AILE++L RL  L    I  E + L  +I E  +
Sbjct: 410 ---------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S ++   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVK
Sbjct: 455 ILASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 515 RTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+ + N+L+    E+I  I+   + E+     Y++ ATK G V++  L D+    
Sbjct: 575 GRDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPR 631

Query: 670 RSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
             G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +   +   GR + G
Sbjct: 632 SGGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPMGRATSG 691

Query: 724 VRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V+G+S  +GD+++SM +V          D  Y +R    ++    R  +     +I   +
Sbjct: 692 VKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDR 751

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              S+ G +  E   E       IL ++  G   RT   + R + R   G++  ++ K +
Sbjct: 752 G--SLVGALVVEETDE-------ILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRD 802

Query: 837 EIGALVA-------VFPVNDNDQI 853
            +  +            V+  D +
Sbjct: 803 AVVGIARNAEAGREAEEVDGADDV 826



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 99/266 (37%), Gaps = 14/266 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK---GRSGVVMRDEDFVT 578
           E +  +           ++  +  G VK+  L  Y + R GG        +    +D + 
Sbjct: 593 EKIAQILAIRDYEAVPYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDELI 652

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 653 GAELVSAEDDLLLISKKAQSIRFTATDDAL-RPMGRATSGVKGMSFREGDELLSMNVVR- 710

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 711 -----PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 765

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E     
Sbjct: 766 ILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGAD 824

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSV 781
                   + +    E T    + S 
Sbjct: 825 DVDGEPAEVHAEGVAEGTVEGTEPST 850


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/847 (43%), Positives = 528/847 (62%), Gaps = 37/847 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   EYPESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV++G +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVV+EIP+QVNKA M+EKIAEL REK++  I DLRDE+  R G 
Sbjct: 243 MRARAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVILNNLYKLTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA DRAH+L GL IA+ ++DE++  IR S   + A   L  R        
Sbjct: 363 VRRRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   I+E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELIAYIEELR 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  V++     RR+ I  G LD +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEVRERFGDERRSEIQLGGLDQIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ +  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + E    + Y+VFATK+G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVINAIELENDESISTMIAVNDLEK--EDAYLVFATKNGIVKRSSLSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V       D+LL T     +RF  S +R    R + GV+GI
Sbjct: 635 INRNGKIAINFRDEDELVAVRLTDGTKDVLLGTSHASLIRFKESKLRPLG-RTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADY---DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +L +GD+++ +A+      D         Y K        IS    +       +   G+
Sbjct: 694 TLREGDELVGLAVATEDSEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKNGD 753

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I    C      E+ I+ V+ +G   R    D   + R+ +G+R   + +   +  +  V
Sbjct: 754 I---VCITTVTGEEDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKV 810

Query: 845 FPVNDND 851
               +++
Sbjct: 811 QEDLEDE 817


>gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A
 gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)]
          Length = 846

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/890 (38%), Positives = 516/890 (57%), Gaps = 87/890 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPH ++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 78  QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+  AH++ GL IA  N+D+V+  I+ + + E A+  LM +               
Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTK--------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL  L+GL R++++ EL  L   IK+  +IL ++ 
Sbjct: 423 -----------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II  +L  +  +    RRT+I  GL   +++E  I  E +V+T S  GY+KR+P+S
Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G  G+   ++D V  L + STH+ +LFF++ G VY+ +  ++P+GS  ++
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN++S+ + E++ +++   + +S     Y  F+TK G V+R K S+F +I  +GKI
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDYDSG----YFFFSTKKGLVKRVKASEFSRIQNNGKI 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KL   D +  V     + +I +    G  VRF    +R    R + GV G+       
Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMG-RTAQGVIGVKFKN--- 703

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                                     ND  +  + S E      
Sbjct: 704 -----------------------------------------PNDEVIGLSSSHE------ 716

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V EKG GK T   ++R++NR  KG+    V+   + G ++    VN N++++
Sbjct: 717 --GSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEELL 772

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++S  G ++RVP+ E+    R T GV + S  + E + SV  I + E  D
Sbjct: 773 MISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVA-IFDVEQDD 821


>gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni]
          Length = 844

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/871 (39%), Positives = 530/871 (60%), Gaps = 48/871 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  E  VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE    +++ IV+ E+PYQ NKA ++ +IAELV+EK+I  I+++RDES+++G RV
Sbjct: 246 RAKPHIE-KKTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNKEGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++
Sbjct: 305 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +          
Sbjct: 365 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KR
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 519 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+   LS++  I  
Sbjct: 579 RTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKCTNLSEYQNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+ LD  DE+++     ++ D +  T   + +                     +L 
Sbjct: 636 VGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE----------NLE 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V +   +L A       I +      +   +S     I   + +  + G +  E  
Sbjct: 686 NEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN- 744

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++ 
Sbjct: 745 -----DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDET 797

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
             ++ ++  G +IRV +  IR A R T GV+
Sbjct: 798 MDLMALTSSGKMIRVDMQSIRKAGRNTSGVI 828



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 26/267 (9%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  T    + ++  T
Sbjct: 502 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 561

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + +C+   
Sbjct: 562 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLINLQAEEKI--MAIIPTTDFDESKSLCFFTK 618

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               +     + + I S+             R   L   ++ +  +       +    + 
Sbjct: 619 NGIVKCTNLSEYQNIRSVG-----------VRAINLDENDELVTAI-----IVQRDEDEI 662

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             +    + +   ++  +++               +  V+ KG  I+ P+ ++R   R +
Sbjct: 663 FATG-GEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVS 721

Query: 878 KGVVIFST-AKDERVVSVERIRESEIV 903
           +GV       K++ +V    I   E  
Sbjct: 722 RGVTAIKFKEKNDELVGAVVIENDEQE 748


>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
 gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 811

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/846 (42%), Positives = 512/846 (60%), Gaps = 40/846 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  +  + I  E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   + G+   K
Sbjct: 2   QASQTKVLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A + G V+G+YHPHG+AA+YDA+ RMAQD+S+R  L++G GNFGSVDGD PAA R
Sbjct: 62  PHRKSANLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  +L D+ KDTVDFRPNYD + QEPVVL AR PN+L+NG  GIAVGMAT+
Sbjct: 122 YTEARLTALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+G + +++NP+  +D LM  I+GPDFPT  +I+G  G++ AY TGRGS+ 
Sbjct: 182 IPPHNLTEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTRGMRQAYRTGRGSVT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+  G R  IVVTEIPY VNKA ++E+IAELV+EK+I  I DLRDESDR+G R
Sbjct: 242 VRGRCEIEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V++++R  S  VILN+LYR T LQ  F + ++AL   +P+   L  +L  ++  R EV+
Sbjct: 302 IVMDIRRDISPSVILNKLYRNTQLQDNFGITLLALVDGEPQVLNLKEMLNQYLNHRREVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L  ARDR H++ GL IA+ NLDEVV IIR SP+ +TAR  LM R         
Sbjct: 362 RRRTEFDLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AI+E+RL +LTGL R+ +  E   L   I +  D
Sbjct: 413 -----------------FDLTEMQAEAIVEMRLRQLTGLERNKLEEEYRELVGRISDLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL    R+  IIK++L+ +K      RRT I E     E ED I  E +VVT+S+ GY+K
Sbjct: 456 ILRRPERVQAIIKEDLIDIKTRFGDKRRTEIREEDASFEAEDLIEEESIVVTLSNRGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS YR+QRRGGKG +G  +R EDF TD+F+ +T +++LFF++ G VY  K +++P  
Sbjct: 516 RQPLSTYRSQRRGGKGVTGTAIRSEDFATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG  +IN L LN GE++ T++     ++     ++V AT+ G V++  + +F QI 
Sbjct: 576 SRQSRGTPVINFLRLNPGEKVNTVISVNRFDA---GQHLVMATRTGMVKKVPIDEFRQIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           RSG IA+ L ++DE++ V+   + + ++L T  G  + F    +RV   R + GVRGISL
Sbjct: 633 RSGIIAINLRNQDELVGVQKIYKGDRLVLVTGRGYSIVFDEGDVRVMG-RGAAGVRGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+VI +      D   +     +       +  S     +            ISE+ 
Sbjct: 692 EQGDKVIDI------DKYKEGADMLLVTERGYGKRTSLQELRLQKRGGKGLKTIQISEKT 745

Query: 790 CQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            + +  K  F     + ++  GF  R    D     R  +G+        + I ++    
Sbjct: 746 GELVGGKAVFPKEEFVALTGAGFVIRLKVDDVPRQKRYSRGVVVMRCEDNDHIVSIARFK 805

Query: 846 PVNDND 851
             ++ +
Sbjct: 806 SEDEEE 811


>gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
          Length = 864

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/864 (38%), Positives = 496/864 (57%), Gaps = 61/864 (7%)

Query: 1   MTEHIISSDEEEEKGI----TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+       EE   +      V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MTDENTPVTPEEGGDVAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP H L EV  G    ++NP+   + L+    E I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHTLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVAVEEIQN-RQCLVVTELPYQVNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +VA + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  L                             + + ++Q  AILE++L RL  L R 
Sbjct: 420 IARGGLRD--------------------------LLAIDDIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E   IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED
Sbjct: 454 KIVQEHDELQAKIDEYNGILASPVRQRGIVSEELAALVEKYGDDRKTKLIPYEGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVTRGGYIKRTRTEDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I    + E+     Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPEAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q +
Sbjct: 631 TKSGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSI 690

Query: 707 RFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHM 758
           RF  +   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    ++ 
Sbjct: 691 RFTATDDTLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTAVDEYR 750

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
              R  +     +I   +   S+ G +  E   E       IL ++  G   RT   + R
Sbjct: 751 VQGRGGLGIKAAKIVEDRG--SLVGALVVEETDE-------ILAITLSGGVIRTRVNEIR 801

Query: 819 ISNRSGKGIRATDVSKINEIGALV 842
            + R   G++  ++ K + +  + 
Sbjct: 802 ETGRDTMGVQLINLGKRDAVVGIA 825



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 105/263 (39%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+ PL  Y + R GG     +  R++   D + 
Sbjct: 610 ETIAQIRAIRDYEAVPYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELI 669

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 670 GAELVSADDDLLLISKKAQSIRFTATDDTL-RPMGRATSGVKGMSFREGDELLSMNVVR- 727

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 728 -----PGTFVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 782

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 783 ILAITLSGGVIRTRVNEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDV 841

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
               +     +  T+E  +  ++
Sbjct: 842 AVDESGEGAAATGTDEGEAPSSE 864


>gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
 gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
          Length = 910

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/873 (39%), Positives = 526/873 (60%), Gaps = 34/873 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++  +  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+    
Sbjct: 2   EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R  L +GQGNFGSVDGD  AA R
Sbjct: 62  NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG  GIAVGMAT 
Sbjct: 122 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  VA ID+PDI++D LM+ +  PDFPTG +I G  G+  AY TGRG +V
Sbjct: 182 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ +VVTE+PYQVNK+  +E+IA+ VR++RI  IADLRDESDR G R
Sbjct: 242 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA+A+++ NQ+Y+++ LQ  F VNMVAL G +P+  TL   ++ +V  R E+V
Sbjct: 302 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+  TAR+ L    +  +   D
Sbjct: 362 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 421

Query: 430 LIDLIDDSSYTIGSDGTMY-----------------------LSEVQTRAILELRLARLT 466
            +  I+      G                             L+E Q  AIL LRL+RLT
Sbjct: 422 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 481

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLL 525
           GL R+ I  E   +  +I+E   IL+SR R + +IK+ELL+VK+  D  RRT I   G  
Sbjct: 482 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 541

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I R+ +VVT+++ G  KR P+  YR Q RGG G  G   R++DF+  L++  +
Sbjct: 542 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 601

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDES 641
           H  +L F+  G  +  + + +P G   A+G+++  ++ ++  +R+  ++       EDE+
Sbjct: 602 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 661

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             N+ YV+ AT+ G V++  L  + +   +G I +K+D  D+++       +N +++ + 
Sbjct: 662 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 721

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ V F     R    RN+ GVRG+ L    +++ M  V  A  D  + +   +H   +
Sbjct: 722 GGRAVHFDEGDARPMG-RNTRGVRGMELPGDQELVGMISVPPAMHDDLDVLAIAEHGYGK 780

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELK--LKEQFILTVSEKGFGKRTSSYDFRI 819
           R  +S    +    K   ++           +K  L ++ ++ ++E G   RT   +   
Sbjct: 781 RTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEIST 840

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             R+ +G++  D+   +   A+  V  V D D+
Sbjct: 841 MGRNTQGVQVIDLKDGD---AIADVTRVADTDE 870



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 106/276 (38%), Gaps = 11/276 (3%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R   ++    +  +++  +    V+  +  G VK+  L  Y   R    G  G+ + +
Sbjct: 643 DDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRS--NGIIGIKIDE 700

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D + +  +     +V+  SS G                 RG   +  + L   + +  +
Sbjct: 701 GDQLIEASLTGGDNTVVVASSGGRAVHFDEGDARPMGRNTRG---VRGMELPGDQELVGM 757

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETC 690
           +  P   +  ++L V+   +HG  +R  LSD+    R GK  + L+  D    ++S++  
Sbjct: 758 ISVPP--AMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGV 815

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T+ G  +R  +  I     RN+ GV+ I L  GD +  +  V   D    +
Sbjct: 816 LGDEDLMVITEGGIMIRTRVGEISTMG-RNTQGVQVIDLKDGDAIADVTRVADTDEPEAD 874

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                          + + E      +D+  + + +
Sbjct: 875 DGTADDEAPDADAAAAANGEMDDDAASDAVEDTSGT 910


>gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 820

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/893 (36%), Positives = 520/893 (58%), Gaps = 84/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Q+G+  N  
Sbjct: 2   SEGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSS 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++Y+ + R+AQ W+LR  LI+GQGNFGS+D DPPAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+++ +  +L D+ K+TVD + N+D S +EP VL  R PN+L+NG  GIAVGMATNI
Sbjct: 122 TEVRMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNI 181

Query: 191 PTHNLGE-VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           P HNL E +   C  + +N ++ ++ +M+ ++ PDFPTG +I G  G+KNA+ TG+G IV
Sbjct: 182 PPHNLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIYGYDGVKNAFHTGKGRIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ I+V EIPYQVNK+ M+ +   L++E ++  I  +RDESDR G R
Sbjct: 242 LRAKVHFEEIQ-GRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V  LK+  + +++LN+L++YT LQ+ F+VN +AL   KP +  +  +++ FV  R +V+
Sbjct: 301 IVYILKQNTNPNILLNKLFQYTPLQTSFNVNNIALVNGKPLQLNIKDMIQHFVDHRHDVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+KY L K ++R H+L+G    + +LD ++++I+ S N   A   L+++         
Sbjct: 361 IRRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              +SE Q+++IL++RL  LT L  D ++ E + L  +I+   +
Sbjct: 412 -----------------FKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQN 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L   S    IIK+ELL +K +    RRT+I      +  ED I  E +V+T+SH GY+K
Sbjct: 455 VLVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  LS Y+ Q RGG G  G   R+ DF   L I + H  +LFF+  G  +  +V+ +P G
Sbjct: 515 RTSLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+A+ NI+ L Q +++   +   +  ++    + YV+  T+ G +++  L ++ +
Sbjct: 575 SKISKGRAIQNIIHLQQDDKVNAYILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             + G  A+ +   D +L       ++ + +  K G+ +RF  + +R   GR S GV GI
Sbjct: 635 PRKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGRIIRFSENKVRS-TGRTSSGVIGI 693

Query: 728 SLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
               K D VI M  V                                             
Sbjct: 694 HFTNKNDMVIGMICV--------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                + K  +  +L VSEKGFGKR++  D+RI+NR GKGI+  ++++  + G L+A+  
Sbjct: 709 -----DGKKAKGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINITQ--KTGYLIAIKH 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V D D ++++   G +IR+ V+ IR+  R T+GV + +  +++ +  V ++ +
Sbjct: 762 VTDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVRLINLKENDAIADVAKVYK 814


>gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii]
          Length = 683

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/686 (50%), Positives = 469/686 (68%), Gaps = 12/686 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 240

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 241 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 301 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 361 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 420

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 421 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 481 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 541 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +G V++  L++F 
Sbjct: 601 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATANGTVKKTVLTEFN 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ 692
           ++  +GK+A+KL   DE++ V+  + 
Sbjct: 658 RLRTAGKVAIKLVDGDELIGVDLTSG 683



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 512 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 571

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
             L+     N +D I+  S +G +  + V ++  A+R  +G   V +    +DER+ ++ 
Sbjct: 572 DRLLVA---NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAIL 628

Query: 896 RIRESEI 902
            + E E 
Sbjct: 629 PVTEFEE 635



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 7/164 (4%)

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S  I L      ++ +  + H    +     + E         S      E+    L + 
Sbjct: 518 SADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA 577

Query: 797 --EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
                IL  S +G       Y    + R  +G    ++  + +   + A+ PV + ++  
Sbjct: 578 NTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGV 637

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + + +  GT+ +  + E       T G V       + ++ V+
Sbjct: 638 KVFMATANGTVKKTVLTEFNRL--RTAGKVAIKLVDGDELIGVD 679



 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 10/182 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F    R+   A   D   E    +  TQE+ ++  +  G     P+S       R   
Sbjct: 504 EQFGDKRRTEITANSADINLE----DLITQEDVVVTLSHQGYVKYQPLSEYEA-QRRGGK 558

Query: 723 GVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G     + + D +  + +    D           Y   +        G            
Sbjct: 559 GKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPL 618

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I+         +   +   +  G  K+T   +F     +GK   A  +   +E+ 
Sbjct: 619 EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKV--AIKLVDGDELI 676

Query: 840 AL 841
            +
Sbjct: 677 GV 678


>gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
 gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
          Length = 828

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/896 (40%), Positives = 551/896 (61%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GVRGI L + D V+  A+V++ D +                               
Sbjct: 686 RSARGVRGIRLNENDFVVG-AVVINDDGNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 99/263 (37%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + + +E   LV+   V+ N   +++ S  G  I+ P+ ++R   R+ 
Sbjct: 632 GSNRSYSGIRAIVLDEGDE---LVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRSA 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV      +++ VV    I + 
Sbjct: 689 RGVRGIRLNENDFVVGAVVINDD 711



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   +D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464]
          Length = 826

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/895 (40%), Positives = 553/895 (61%), Gaps = 95/895 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIGDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F   N +G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    R
Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREIG-R 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI L + D V+  A+V+  D++                                
Sbjct: 685 TTRGVRGIRLNENDFVVG-AVVISDDSNK------------------------------- 712

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKGI    +++  + G
Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 750

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
            LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 803



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 103/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L    D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S    + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L R+ V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 96/263 (36%), Gaps = 63/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ  R  +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYRLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEFD 632

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            +      +RA  + + +E   LV+   V+ N   +++ S  G  I+ P+ ++R   R T
Sbjct: 633 SNYNG---MRAIVLDEGDE---LVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREIGRTT 686

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV      +++ VV    I + 
Sbjct: 687 RGVRGIRLNENDFVVGAVVISDD 709


>gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
 gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
          Length = 829

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/896 (40%), Positives = 536/896 (59%), Gaps = 92/896 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D      I +++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +   
Sbjct: 3   DLLNNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHG 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K+ K ARI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD  AA 
Sbjct: 63  AKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMAT
Sbjct: 123 RYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HN  E++ G  A++ NPDI L  LME I+ PDFPTG +I G+ GI +AY TGRG I
Sbjct: 183 NIPPHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGGIIFGKKGIMDAYETGRGRI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  +HIE+ S  +E IV+ E+PYQVNKA ++E IA LV++K I  ++++RDESDR G 
Sbjct: 243 KVRAKTHIEQKSK-KEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ TS+Q+ F + M+++   +P  F +I ILK F+  R+ +
Sbjct: 302 RVVIELKRDAMSEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGIITILKHFINHRKTI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KA+ RAH+L GL  A++ +++V+R+IR S N E A+  L+          
Sbjct: 362 IIRRTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSE-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                S++Q  +I+ +RL RLTGL  + I NEL  L   I+   
Sbjct: 414 ------------------FDFSDIQAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL S   L  II +E   V D   +  RRT I +   D++ ED I  E MVVT++H GY
Sbjct: 456 SILRSEEVLHSIIAEEFDEVLDTYGSNERRTEIEDDYDDIDIEDLIPNEPMVVTITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRVPL++Y  Q+RGGKG++ V   ++DF+   F  +TH ++LF +  G ++  KV+++P
Sbjct: 516 IKRVPLTLYEKQKRGGKGKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  A+GKA++N+L+L   ERI +I+P  +      +  +VF T+ G V+R  LS+F  
Sbjct: 576 EGSRIAKGKAVVNLLNLMADERIRSIIPTTD---FSEDKGLVFFTQKGVVKRTNLSEFSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I  +G  A+ LD  D +++ +   Q    + + TKL QC++F I   R   GR++ GVRG
Sbjct: 633 IRSNGVRAIVLDEDDALITAKIADQSIKYLFIMTKLAQCIKFDIEKTRE-QGRSTRGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I      D+VI   I+ + + +                                      
Sbjct: 692 IKFKHPEDEVIDANIIANDEQE-------------------------------------- 713

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAV 844
                         IL V+EKG GKRT + ++R++NR G G+ A  ++  ++ G  +V  
Sbjct: 714 --------------ILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMT--SKTGKYVVGC 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V+++  ++ ++  G +IRV +  I  +SR T GV I    K + V +V R  + 
Sbjct: 758 LMVDESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIV---KGDDVANVSRCPKQ 810


>gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3]
          Length = 675

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/665 (72%), Positives = 568/665 (85%), Gaps = 1/665 (0%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAA
Sbjct: 10  DVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAA 69

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+
Sbjct: 70  HSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVI 129

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE  
Sbjct: 130 DGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPM 189

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
            GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+
Sbjct: 190 RGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDAN 249

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL K
Sbjct: 250 AEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRK 309

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  +
Sbjct: 310 ARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRH 369

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  
Sbjct: 370 RINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQT 429

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I+K EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQ
Sbjct: 430 IVKDELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQ 489

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALI
Sbjct: 490 RRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALI 549

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL- 678
           N+L L  GERITTI+P PEDE SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL 
Sbjct: 550 NMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLE 609

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +  DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM
Sbjct: 610 EEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISM 669

Query: 739 AIVLH 743
            IV H
Sbjct: 670 TIVGH 674



 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 16/242 (6%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+  +   L+  DE    +   +E+ ++  + LG   R P++  R    R   
Sbjct: 440 DEFGTPRRTEIVDGGLEMDDE----DLIAREDMVVTVSHLGYIKRVPLTTYRA-QRRGGK 494

Query: 723 GVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           G  G++    D V  + +V  H    +      +      R  I   T    +L N   +
Sbjct: 495 GRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPL 554

Query: 782 EGNISEERCQELKLKEQ-----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                      L   E+      ++  + +G  +R    DF   NR+GK   A  + +  
Sbjct: 555 APGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGK--IAMKLEE-- 610

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVE 895
           E   +++V    ++D ++L +  G  IR  V+++R+ A R + GV   +  + +R++S+ 
Sbjct: 611 EGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMT 670

Query: 896 RI 897
            +
Sbjct: 671 IV 672



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 86/206 (41%), Gaps = 12/206 (5%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + LA+   +    I    +   +E   Y+  +S++ R+ 
Sbjct: 369 HRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQ 428

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+T+++++      + +     E   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 429 TIVKDELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 488

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG         + +  L   F VN +  ++  S +G + +  V  + I +  ++G
Sbjct: 489 QRRGGKGRSGMTTRDEDFVSRL---FVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRG 545

Query: 880 VVIFS---TAKDERVVSVERIRESEI 902
             + +    A  ER+ ++  + E E 
Sbjct: 546 KALINMLPLAPGERITTILPLPEDEE 571


>gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205]
 gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205]
          Length = 839

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/871 (38%), Positives = 499/871 (57%), Gaps = 53/871 (6%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E +             I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPDAPETGGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ W+LR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDF 225
           R PN+LVNG  GIAVGMAT IP HNL E+       +++P+      L+AL+ I++GPDF
Sbjct: 181 RIPNLLVNGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+G+ GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGQAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL+RE ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIREGKLGGIADIRDESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++++V  + EV+ RRT + L KA +RAH+L GLA A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRSYVEHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  + AR+ L++                           + + E+Q  AIL+++L R
Sbjct: 421 RRSPTVDDARQGLIR--------------------------LLDIDEIQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+I+   
Sbjct: 455 LAALERQRILDDLVKLELEIADFKDILAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  +  YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+   + + +  
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQVA-- 632

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ KL +F      G IA+ L   DE++       E D+LL +K   
Sbjct: 633 -PYLVLATKNGVVKKTKLEEFDSNRSGGIIAINLREDDELVGAALVAPEQDLLLVSKNAL 691

Query: 705 CVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQR 762
            +RF  S   +   GR + GV G+  ++ D++++M +V H  D        Y K    + 
Sbjct: 692 AIRFNASDEALRPMGRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIEE 751

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-N 821
             + G   +       +   G +       +   +  +  ++  G   RT     R + +
Sbjct: 752 YPVQGRGGKGVLTAKITERRGGL---VGAVVIDPDDELFAITSNGGVIRTPVKPVRRTRD 808

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R+  G++  D+   + +  +      ++ D+
Sbjct: 809 RNTMGVKLMDL--PDGVTIVAIARNADEPDE 837


>gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 870

 Score =  692 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/865 (39%), Positives = 500/865 (57%), Gaps = 62/865 (7%)

Query: 1   MTEHIIS--SDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +       DE  E     I +V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MADENNPTTPDELAEGAAMRIEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC++   A  +L D+ ++TVDF+ NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231
           VNG  GIAVGMATNIP HNL EV +G    + NP+   + L+    + I+GPDFPTGA++
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIADLVKDA 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 RIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +TAR  LM+                           + + E+Q  AILE++L RL  L R
Sbjct: 420 DTARGGLME--------------------------LLEIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E   IL+S  R   II +EL ++ ++    RR+++V    DM  E
Sbjct: 454 QKITQEHDELQAKINEYNAILASPERQRQIISEELTALVEKFGDDRRSKLVPFDGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++  GY+KR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTITRGGYLKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP    +ARG+ + N+L+    E+I  I+   + ++     Y+V 
Sbjct: 574 FFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIARILAIRDYDAV---PYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705
           ATK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q 
Sbjct: 631 ATKSGLVKKTPLKDYDSPRSGGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQS 690

Query: 706 VRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKH 757
           +RF  +   +   GR + GV+G+S  + D+++SM +V          D  Y +R    ++
Sbjct: 691 IRFTATDESLRPMGRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKRSNVDEY 750

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               R  +     +I   +   S+ G +  E   E       IL ++  G   RT   + 
Sbjct: 751 RVQGRGGLGIKAAKIVEDRG--SLVGALVVEESDE-------ILAITLGGGVIRTRVSEV 801

Query: 818 RISNRSGKGIRATDVSKINEIGALV 842
           R + R   G++  ++ K + +  + 
Sbjct: 802 RETGRDTMGVQLINLGKRDAVVGIA 826



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 103/267 (38%), Gaps = 14/267 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+ PL  Y + R GG     +   ++   D + 
Sbjct: 611 EQIARILAIRDYDAVPYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMEDGREDELI 670

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  + + + ++     
Sbjct: 671 GAELVSADDDLLLISKKAQSIRFTATDESL-RPMGRATSGVKGMSFREDDELLSMNVVR- 728

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R+ + ++    R G   K A  ++ R  ++      + ++
Sbjct: 729 -----PGTFVFTATDGGYAKRSNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDE 783

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  +S +R   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 784 ILAITLGGGVIRTRVSEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEDVI 842

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVE 782
           +         + +    T    D + E
Sbjct: 843 ETAIEAAEEAASEAAGGTQPPADETTE 869



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + D ++ ++  G L R    + R   R  KGV      +D+ V
Sbjct: 518 EEDIVVTITRGGYLKRTKTEDYRSQKRGGKGVRGTKLKQDDIV 560


>gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
 gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
          Length = 834

 Score =  692 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/848 (42%), Positives = 511/848 (60%), Gaps = 45/848 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++     V I +E++ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++  ++NK 
Sbjct: 3   PKDARKEDVRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YDAL RMAQD+++R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A+ LL D+ KDTVDF  NYDGS +EPVVL  + P +L+NG  GIAVGMATNI
Sbjct: 123 TEVRMAKLANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV    VA++DNPDI +  LM  + GPDFPT   I G  GI+ AY  GRGSI I
Sbjct: 183 PPHNLGEVARALVALLDNPDIGVRELMRHVPGPDFPTRGFIHGAEGIEQAYRDGRGSIQI 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  ++IE  +  ++  I+VTE+PYQVNKA +LEK+AELV++K+I  I+DLRDESDR G R
Sbjct: 243 RAKANIETVARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV +L+R A   V+LNQL+++T +Q+ F +NM+A++  +P    L  +L+ F+  R E+V
Sbjct: 303 VVFDLRRDAVPQVVLNQLFKFTQMQTTFGINMLAIDRGRPRLMGLKDVLELFIEHRREIV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT + L KA  RAH+L GL IA+ NLDEV+ +IR + NP  A+  LM R         
Sbjct: 363 LRRTAFDLAKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSR--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AILE+RL RLTGL RD I  E   +  EI     
Sbjct: 414 -----------------FSLSEKQAQAILEMRLQRLTGLERDKIMAEYREVIKEIARLRH 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S   +  II++E L + +E    RRT IV  + D+E ED I  E+MVVT+SH GY+K
Sbjct: 457 ILESDEEVRRIIREETLLLAEEFGDKRRTEIVGRVSDIELEDMIAEEEMVVTLSHGGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R P S+YRAQRRGGKG  G+  +DEDFV DLF  STH+ +L F+  G +Y  KV  +P  
Sbjct: 517 RTPTSLYRAQRRGGKGSRGMATKDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              +RGKA++N++ +   E ++T++   E         V+ AT+ G +++ +L  F +  
Sbjct: 577 GRASRGKAIVNLVQMLPDESVSTVLAVRE---FVEGRQVIMATQKGVIKKTELMSFSRPR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+ L   D ++S      E ++ L T+ GQ +RF  S +R    R + GV+GI +
Sbjct: 634 AGGIIAINLAEGDHLVSARLTDGEMEVFLATRQGQAIRFHESQVRSMG-RAAAGVKGIDV 692

Query: 730 AKGDQVISMAIV------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
              DQV++M  V      L    +   +   M    A+ R   G     T+ +N   V  
Sbjct: 693 EHDDQVVAMEAVAGAPTMLTITENGFGKRTRMDEYPARNRAGKGVITIKTTTRNGHVVSA 752

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +  +        +  ++ +++ G   R       +  R+ +G++  D+     + A+  
Sbjct: 753 LVVGD--------DDEVMLITDVGKVIRMKVGGISVIGRNTQGVKLIDLEPGERLVAVAR 804

Query: 844 VFPVNDND 851
           +    D++
Sbjct: 805 LAEPGDDE 812



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 98/252 (38%), Gaps = 15/252 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +      V    V+  +  G +K+  L  +   R G  G   + + + D +    
Sbjct: 595 ESVSTVLAVREFVEGRQVIMATQKGVIKKTELMSFSRPRAG--GIIAINLAEGDHLVSAR 652

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +      V   +  G   +    ++      A G   +  + +   +++  +      E+
Sbjct: 653 LTDGEMEVFLATRQGQAIRFHESQVRSMGRAAAG---VKGIDVEHDDQVVAM------EA 703

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILL 698
                 ++  T++G  +R ++ ++   NR+GK  + + +      ++S      +++++L
Sbjct: 704 VAGAPTMLTITENGFGKRTRMDEYPARNRAGKGVITIKTTTRNGHVVSALVVGDDDEVML 763

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T +G+ +R  +  I V   RN+ GV+ I L  G++++++A +     D  E        
Sbjct: 764 ITDVGKVIRMKVGGISVIG-RNTQGVKLIDLEPGERLVAVARLAEPGDDEVEAGELPDED 822

Query: 759 SAQRRLISGDTE 770
                    + E
Sbjct: 823 DEIVAGPEPEDE 834


>gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC]
 gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC]
          Length = 830

 Score =  692 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/906 (38%), Positives = 533/906 (58%), Gaps = 93/906 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ NP+  ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLVLSNPNASIEEILEVMPGPDFPTGGIICGGEGIRSTYHTGRGKIKVR 243

Query: 252 GVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+     RE I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G RV
Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S+++++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R EV+ 
Sbjct: 304 VLELKKGESSEIVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ LDEVVR IR S + E A+ +L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVEN---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AILELRL +LTGL  + I+ E + L  +I     +
Sbjct: 414 ----------------FGFTEQQSVAILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYVK 549
           L+    +  II+ EL  ++    TPRRTRI     D+ D + I+  E +++T+S   YVK
Sbjct: 458 LADEGLVKDIIRNELQDIQRVHKTPRRTRIEFDADDIRDIEDIITNEPVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP 
Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F  
Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNVKNFE---NAGFLFLATKHGVVKKVALEAFSN 634

Query: 668 INRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE+++     ++E  ++L T+LG  VRFP   +R    R + GVRG
Sbjct: 635 PRKKGIRALEIDDGDELIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPMG-RTARGVRG 693

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL  + D+V++  IV    +                                       
Sbjct: 694 VSLKNENDRVVACQIVKDDQS--------------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 715 --------------VLVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERN--GDVLGAI 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER--IRESEIV 903
            V DND I+L+S +G  IR+ + ++R+  R+T+GV +      + +V++E+  + E E +
Sbjct: 759 SVTDNDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKDGDILVAMEKLSLNEDETL 818

Query: 904 DEAEST 909
            + E  
Sbjct: 819 ADIEQE 824


>gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
 gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
          Length = 806

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 544/892 (60%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG+ AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R
Sbjct: 242 LRAEARIE-ESKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V     D +      ++   ++  +S  T                    
Sbjct: 690 NKDDEVISFDLV----KDNEFLAVISENGYGKKTELSNYT-------------------- 725

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                       T +  G G RT    ++I+ ++G    A  + K +EI           
Sbjct: 726 ------------TQNRGGKGIRT----YKIAKKTGDVACAKALKKEDEI----------- 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
               +L+S +  +IR+    I   SR+T GV++ +T K  + +V+V +  E 
Sbjct: 759 ----LLISKQAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 10/249 (4%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + +++LS+        +    L    +   +E   +E+  +  T  G   R    A +V 
Sbjct: 463 IIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKV- 521

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEI 772
             R   GV  + +  GD +  M                ++  +K         +     I
Sbjct: 522 QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNI 581

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +L    + E         + K  +QFI+ +++KG  K+TS   +    ++G  I A   
Sbjct: 582 INLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTG--IIAIKF 639

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +E   L+ V  V  N+++I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+
Sbjct: 640 DEGDE---LIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVI 696

Query: 893 SVERIRESE 901
           S + ++++E
Sbjct: 697 SFDLVKDNE 705



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +D+ DEI+ +   + ++ +    +          AI     +   G+    L      +
Sbjct: 384 AIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDEL 443

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE---RCQEL 793
           S  I        ++    + +      +I  +  EI +   D      + ++      EL
Sbjct: 444 SALI--------EKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMEL 495

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E   +T++ KG+ KR S+  +++ +R G+G+ A  +   +    +  +F    +  +
Sbjct: 496 LEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGD---FIKDMFATTTHQDL 552

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
           +  ++KG +  +   E+  ASR  +G  I +      DE V  V  + + +  D
Sbjct: 553 LFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKEND 606


>gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d]
          Length = 828

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/896 (40%), Positives = 551/896 (61%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELIIDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL+  E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLDPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   ++   +L+ + LG  ++F +  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+  A+V++ D++                               
Sbjct: 686 RTTRGVIGIKLNENDFVVG-AVVINDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 98/263 (37%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISL   +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLDPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + + +E   LV+   V+ D   +++ S  G  I+  + ++R   R T
Sbjct: 632 GSNRSYSGIRAIVLDEGDE---LVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREIGRTT 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV+     +++ VV    I + 
Sbjct: 689 RGVIGIKLNENDFVVGAVVINDD 711



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 102/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L    D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S   DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLDPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
 gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
          Length = 899

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/904 (38%), Positives = 537/904 (59%), Gaps = 90/904 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  +G++ V + +EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+ ++ +
Sbjct: 66  ESFEGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITYSSQ 125

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD  AA RY
Sbjct: 126 HRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDSAAAMRY 185

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +LD + KDTVDF  NYD S  EPVVL +R+PN+LV+G  GIAVGMAT I
Sbjct: 186 TEARMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRFPNLLVSGATGIAVGMATEI 245

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++  +A   N +I  + LM  I+GPDFPTGA ILG  GI + Y TG+G I +
Sbjct: 246 PPHNLSETINATIAFARNNEITTEELMIHIKGPDFPTGATILGVKGILDMYETGKGKIPV 305

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ +  + +I+VTEIPY V K  ++EKI EL ++K +  I +LRDES+R+G R+
Sbjct: 306 RSKTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDKVVEGIGELRDESNREGIRI 365

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++K+G +  V+LN+L++ + LQ+  + N+VAL   +P+   L  IL  ++  + EVV 
Sbjct: 366 VIDVKKGFNPHVLLNKLFQKSYLQTNVNANLVALVNGEPKLLNLKQILNIYLNHQIEVVT 425

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR K+ L KA D+ H+L GL IAV N+DEVV+II+ S N   A+  L  R          
Sbjct: 426 RRLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTR---------- 475

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E QT+AIL++ L RLTGL  + +  E++ L  EI     I
Sbjct: 476 ----------------FNLTEKQTKAILDMSLRRLTGLNIEKMNQEIDELNKEISYIRSI 519

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549
           L SR +L+ +I  EL  +K++    RRT I E  +  + DED I    +V+T S  GYVK
Sbjct: 520 LESREKLIDLIVDELEIIKEKYGDKRRTEIDESAISSISDEDLIPVNTIVITTSVKGYVK 579

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  Y  Q RGG G + +    +D ++ +   +THT ++ F++LG VY+ +  ++P G
Sbjct: 580 RMKLDDYNVQNRGGIGVNTMKTYADDDISTILQTTTHTDLMLFTNLGRVYRIRAHQIPEG 639

Query: 610 SPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           S Q++G   INI   L+  +GE++ +++     E+  +  Y+V  T++G +++ ++S + 
Sbjct: 640 SKQSKGTPFINIIPSLNEKEGEKVVSLLAV---ETYSDEQYLVTVTENGIIKKTQISQYE 696

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +GK A KL   D +++       N+IL+ +     V+F  + +R    R+S GVRG
Sbjct: 697 SIRSNGKYAFKLRENDHLVNAFIVEDGNEILIASNGKNVVKFSSNDLRPLG-RSSFGVRG 755

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+LA+G +V++ +     D                                         
Sbjct: 756 ITLAEGKKVLTASSDKDGD----------------------------------------- 774

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       FIL++  KGFGK T S +FR+  R GKG+ A +    ++ G L+    
Sbjct: 775 ------------FILSIGTKGFGKLTPSEEFRLIKRGGKGVTAIN---ADKAGDLIFAKF 819

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V  ND+ ++++  GT IR+ +++I + SRATKGV I +   ++ +++VE ++  + +++A
Sbjct: 820 VKPNDEALIITAAGTTIRILISQISVTSRATKGVKIINLRDNDEIIAVEIVKNEQELEKA 879

Query: 907 ESTE 910
            + E
Sbjct: 880 LTQE 883


>gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92]
 gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92]
          Length = 873

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/883 (41%), Positives = 539/883 (61%), Gaps = 51/883 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I++ +    + I  V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENILNLN----QDIKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL +R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P H+L E++DG + ++DN +  L+ +M+ I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIFGKKGIMEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++R
Sbjct: 237 YRTGRGRVKVRAKTHIE-KKPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A +D++LN L++ T+++S F V M+A++  +P+ FTLI +LK 
Sbjct: 296 DESDREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIDNKEPKIFTLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++R+T + L KAR RAH+L GL IA+ N+DEV+ +IR S +  +AR  LM++
Sbjct: 356 FLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q+ AIL++RL++LTGL R+ + NEL  L
Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLDNELKEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK ELL +K +   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 LAEISRLDEILKSETLLENLIKDELLEIKSKFKVPRLTEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  +      N  + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLVQLQPEEKIKAIIPTTDFAQ---NKSLAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVF 716
            LS+F  I   G  A+ LD  DE+++       +       L  +LG             
Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEHGDEGVQPENLIDELGVETEINEIETIES 686

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                      S+   D+ + + IV         ++  ++ M    R ++G   +    K
Sbjct: 687 EIDEQSDENIDSIDDTDEKM-LFIVTKKGMCLKFKLGKVRQMGRTARGVTGIKFK---EK 742

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D  V   + E   QE       IL++S+KG GKRT++ ++R++NR GKG+    ++   
Sbjct: 743 GDEVVGAAVIESNAQE-------ILSISQKGIGKRTTAEEYRLTNRGGKGVICMKLTTR- 794

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             G L+ V  V+D   ++ ++  G +IRV +  IR A R T G
Sbjct: 795 -TGELIGVVMVDDEMDLMALTSSGKMIRVDMQSIRKAGRNTSG 836


>gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis]
          Length = 887

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/902 (38%), Positives = 534/902 (59%), Gaps = 87/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE   G+  V+++ EMQNS+L YA++VI+ RAIPD RDGLKPVHRRIL+GM  +G+  + 
Sbjct: 58  EEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHHSS 117

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG+A++Y+A+ RMAQ++S+R  L++G GNFGS+DGDP AA R
Sbjct: 118 AFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAAMR 177

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L+ + K+TV+F PNYD S  EP VL +R+PN+LV GG GIAVGMAT 
Sbjct: 178 YTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMATT 237

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HNL E +   +A   NP I L  LME I+GPDFPTG +ILG  GI +A+ TG+GSI 
Sbjct: 238 IAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTKGIIDAFETGKGSIS 297

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  S  + +I+V+EIPY V K  ++EKIA LV+EK I  I+DLRDE++R+G R
Sbjct: 298 IRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRKGIR 357

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+    +V+LN+L++ T+LQ  F+VNMVAL   +P+  +L   L+ ++  ++E+V
Sbjct: 358 IVIEVKKNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGEPKLLSLKDALRVYLDHQKEIV 417

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR K+ L K+  R H+L GL IAV+N+DEV+RIIR S     A+ +L Q+         
Sbjct: 418 IRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQK--------- 468

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+QT+AI+E+RL RLTGL  + +  E+  L I I    +
Sbjct: 469 -----------------FSLSEIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKE 511

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S  +L+ +I +EL  +K++    R T+I    + ++ DED I   ++ +  S  GYV
Sbjct: 512 ILNSEQKLIDLIVEELEEIKEKYGDKRLTQIDSYAIANISDEDLIPERNIAIIQSVKGYV 571

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ LS Y+ Q RGG G S     ++D +  +   +THT +L F+S   VY+ +  ++P 
Sbjct: 572 KRINLSEYKVQNRGGVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPE 631

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G   IN++ + + E + +I+P    +   +  ++V  T++G +++ K+  F +I
Sbjct: 632 SSKQSKGIPFINLIQIEKDEEVVSILPAQNYD---DGKFLVTLTQNGLIKKTKIEHFQRI 688

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GKIAM +   D+++       + +I++ +  G+ VRF +S +R   GR S GVR I 
Sbjct: 689 NTNGKIAMVILENDKLVRAMILNNDEEIIVGSSEGKIVRFDLSEVR-DTGRKSAGVRAIK 747

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA   + IS++                                                 
Sbjct: 748 LAPKHKAISLSA------------------------------------------------ 759

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + +++ ++   GFGK+T   D+R + R+ KG+    V   ++ G LV    V 
Sbjct: 760 -----SSEGKYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITIKV---DKAGKLVHSGFVE 811

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ II+++ KG  IR  + ++   SR+TKGV I    KDE++ S+  I  ++I +E   
Sbjct: 812 GSEDIIILNSKGIAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTLINVNKIDEEISK 871

Query: 909 TE 910
           T+
Sbjct: 872 TQ 873


>gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
 gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
          Length = 983

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/916 (37%), Positives = 531/916 (57%), Gaps = 31/916 (3%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            + I ++ +     + +V + DE++ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+ M 
Sbjct: 40  DDGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMY 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            + +  N +  K AR+ G+V+G++HPHG+AA+Y+ + RMAQ +S+R  LI GQGNFG++D
Sbjct: 100 DLKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNID 159

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE R+ K A  +L D+ K+TVD  PNYDG+ Q P VL  R+PN+LVNG  G
Sbjct: 160 GDGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSG 219

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+DG VA++DNPD+ LD LM  I GPDFPTG  I+G  GI+ AY
Sbjct: 220 IAVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIVGNAGIREAY 279

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG  ++R  +HIE+    R+ I V EIPY VNK+A++++IAELVR+K+I  I+++ D
Sbjct: 280 RTGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVND 339

Query: 302 ESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            SD+    R+ I+LKR A  + +LN L+  TSLQS F +NM+AL    P +  L  IL  
Sbjct: 340 LSDKDNQVRIAIDLKRDAYEEAVLNNLFERTSLQSSFPINMIALVHNHPRQLPLKEILSE 399

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FR EVV RRT YLL + R +A +  GL +A AN++++V +I  S N + ARR LM+ 
Sbjct: 400 FINFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLMEE 459

Query: 421 SWNASDIKDLIDLIDD----------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            W+ + I  LI+  ++                 D   YLSE Q RAIL L+L RLT L  
Sbjct: 460 PWDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHLAG 519

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           D+I+ +  +L   IK  L+IL++  R+  +I+ EL+ VK+     RR+   E    +   
Sbjct: 520 DEIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFADKRRSDFTEDYGKLSKA 579

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  +D++VT+S  GY+K   +S Y AQ+RGGKGR    ++D+DF++ + + +TH +++
Sbjct: 580 DFIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISRMAVTNTHDTLM 639

Query: 591 FFSSLGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            F+  G V+  KV+ LP       RG+ + NI  + +GE+IT ++P  E +    N +++
Sbjct: 640 CFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFDE---NHFII 696

Query: 650 FATKHGNVRRNKLSD----FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            AT  G +++ KLS       ++N     A+ L   D ++  E  + ++D+ + +  GQC
Sbjct: 697 MATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSDGQC 756

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R            N   V   +    D      +  + D   +  +  +   + Q    
Sbjct: 757 IRICE-------FYNKKDVAD-NDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRP 808

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSG 824
           SG       +      +  +S       +   + ++ V+  G+GKR    D  +  NR  
Sbjct: 809 SGRGSGALRIIKLRPGQTAVSLILLSVDETDPEAVM-VTANGYGKRILLTDIPLRMNRGS 867

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G++    S ++  G LV V   + N   ++++D G + R PV+ + +  R   GV++  
Sbjct: 868 SGVKTM--SHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVSNLPLPGRTAGGVIVMR 925

Query: 885 TAKDERVVSVERIRES 900
             + E +++++ I E+
Sbjct: 926 PYEGESIIALQSIPEN 941



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 103/306 (33%), Gaps = 49/306 (16%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTD 579
           E +  +           ++  + +GY+K+V LS +++  QR   +    + +R+ D +  
Sbjct: 678 EKITALLPVSEFDENHFIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMG 737

Query: 580 LFIVSTHTSVLFFSSLGFVYKEK-------VWRLPIG----------------------- 609
             I S    V  FSS G   +         V                             
Sbjct: 738 AEISSGDDDVFVFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKV 797

Query: 610 ---------SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                     P  RG   + I+ L  G+   +++    DE+       V  T +G  +R 
Sbjct: 798 VDRHAGQGIRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEA---VMVTANGYGKRI 854

Query: 661 KLSDFIQINRSG----KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            L+D       G    K    +D   +++ V      +D L+ T LG   R P+S +   
Sbjct: 855 LLTDIPLRMNRGSSGVKTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVSNL-PL 913

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV  +   +G+ +I++  +       +E     +++     L   +       K
Sbjct: 914 PGRTAGGVIVMRPYEGESIIALQSIPENVVASNEHTRNARNLDKNDELEIIEKLNGGKDK 973

Query: 777 NDSSVE 782
           +     
Sbjct: 974 DAEETS 979



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 82/276 (29%), Gaps = 60/276 (21%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           ++   +    ++ I+  ++ G      IS       R   G +   L   D +  MA+  
Sbjct: 575 KLSKADFIAPQDVIVTLSQEGYIKYQDISTYEA-QQRGGKGRQAAKLKDDDFISRMAVT- 632

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL------- 795
                +D  +C+          +               ++     E  +++         
Sbjct: 633 ---NTHDTLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEF 689

Query: 796 -KEQFILTVSEKGFGKRTSSYDFRI--SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            +  FI+  +  G+ K+     F+      + + I+A  + + +   +L+     + +D 
Sbjct: 690 DENHFIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGD---SLMGAEISSGDDD 746

Query: 853 IILVSDKGTLIRV----------------------PVNE--------------------I 870
           + + S  G  IR+                       V E                    I
Sbjct: 747 VFVFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGI 806

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           R + R +  + I      +  VS+  +   E   EA
Sbjct: 807 RPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEA 842


>gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
 gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
          Length = 840

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/872 (38%), Positives = 496/872 (56%), Gaps = 54/872 (6%)

Query: 1   MTEHIISSDEEEE------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48
           MT+   S+  E E              I  V +  EMQ SYL YA++VI+GRA+PD+RDG
Sbjct: 1   MTDTPESTPSEPEVPETPAAAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDG 60

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR 
Sbjct: 61  LKPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRY 120

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L 
Sbjct: 121 PLVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILP 180

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPD 224
           +R PN+L+NG  GIAVGMAT IP HNL E+       ++NPD      LDAL+EI++GPD
Sbjct: 181 SRIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPD 240

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPT  +I+G   I++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+I
Sbjct: 241 FPTHGLIVGTQAIQDAYRTGRGSIRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERI 300

Query: 285 AELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           AEL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+A
Sbjct: 301 AELIKEGKLGGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLA 360

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           L    P    L   ++ +V  + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +
Sbjct: 361 LVDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIAL 420

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR SP  E AR+ L++                           + + E+Q  AIL+++L 
Sbjct: 421 IRRSPTVEDARQGLIR--------------------------LLEIDEIQATAILDMQLR 454

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           RL  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+IV  
Sbjct: 455 RLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAKWGDERRTKIVPF 514

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
             ++  ED I RED+VVT++  GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ 
Sbjct: 515 DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVC 574

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           STH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+  P  + + 
Sbjct: 575 STHDWMLFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQADEQIAQIIEIPNYQVA- 633

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
              Y+V ATK+G V++ +L +F      G IA+ L   DE++        +D+LL +K  
Sbjct: 634 --PYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDELVGAALVAPSDDLLLVSKNA 691

Query: 704 QCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761
           Q +RF  +   +   GR + GV G+  +  D +++M +V    D        Y K    +
Sbjct: 692 QAIRFNATDEALRPMGRATSGVIGMRFSDEDVLLAMEVVREGLDVLVATNGGYAKRTPIE 751

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS- 820
              + G   +       +   G +       +   +  +  ++  G   RT     R + 
Sbjct: 752 EYPVQGRGGKGVLTAKITERRGGL---VGAVVIHPDDELFAITSNGGVIRTPVKPVRRTR 808

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +R+  G++  D+   + +  +      ++ D+
Sbjct: 809 DRNTMGVKLMDL--PDGVTIVAIARNADEPDE 838


>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
 gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/904 (38%), Positives = 507/904 (56%), Gaps = 78/904 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K + KC
Sbjct: 82  RVVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKC 141

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR  LI+G GNFGSVD DPPAA RYTECR
Sbjct: 142 ARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECR 201

Query: 135 LQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L        L DL +DTVDF PN+D S +EP +   R P +L+NG  GIAVGMAT IP H
Sbjct: 202 LDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPH 261

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI +AY +G+G IV+RG 
Sbjct: 262 NLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIMGNQGILDAYRSGQGRIVVRGK 321

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           + +E   +   R  +++ EIPYQ NKA+++EKIAELV +K +  I+D+RDESDR G R+V
Sbjct: 322 TDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRIV 381

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRGA   ++LN LYR T LQS FS NMV +   +P++  L  +L+AF+ FR  VV R
Sbjct: 382 IELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQAFLDFRCSVVER 441

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L++A+ R H++ G+   + NLD VV IIR + +   A  +L              
Sbjct: 442 RAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNE----------- 490

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL++ L RLT L       E  SL  +I +  ++L
Sbjct: 491 ---------------FSLSEKQAEAILDISLRRLTLLEGKKFVEESKSLMEQITKLEELL 535

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           SSR  +L +I+QE + +K++   PRR+ + +     +ED D I  E+M++ +S  GYVKR
Sbjct: 536 SSRGNILQLIEQEAVELKNKFSNPRRSMLEDSDSGQLEDIDVIPNEEMLLAISEKGYVKR 595

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + +  Q RG  G+S   +RD D ++D  +   H  VL+FS  G VY    +++P  +
Sbjct: 596 MKPNTFNLQNRGTIGKSVGKLRDSDAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECT 655

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A G  LI  LSL+ GERIT+I+P  E      + +++  T +G +++  L+ F  I  
Sbjct: 656 RAAAGTPLIQFLSLSDGERITSIIPVSE---FVEDQFLLMLTVNGYIKKVSLNSFSAIRS 712

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA++L   DE+  V  CT  + + + ++ G  +      IR    RN+ G   + L 
Sbjct: 713 TGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGMVILTSCENIRALG-RNTRGGVAMRLR 771

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD++ SM I+                                SL+ D  V    SE   
Sbjct: 772 EGDKIASMDIIP------------------------------ASLQKDLEVASKDSENNN 801

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV--- 847
              K    ++L VSE G GKR     F+ S  +  G+      + +    L AVF V   
Sbjct: 802 ---KGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEED---HLAAVFAVGFS 855

Query: 848 -----NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                  ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   I  ++ 
Sbjct: 856 LTEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAGKIQSTSLISAADP 915

Query: 903 VDEA 906
             E 
Sbjct: 916 ELEE 919


>gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16]
          Length = 828

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/896 (40%), Positives = 544/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++V+LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEVVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELIADLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 711 -----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV++  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSIISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + + +E   LV+   V+ N   +++ S  G  I+ P+ ++R   R T
Sbjct: 632 GSNRSYSGIRAIVLDEGDE---LVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRTT 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV+     +++ VV    I + 
Sbjct: 689 RGVIGIRLNENDFVVGAVVISDD 711



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   AD +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           35A]
          Length = 828

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 543/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL R+ I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVIGD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 711 -----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + + +E   LV+   V+ N   +++ S  G  I+ P+ ++R   R T
Sbjct: 632 GSNRSYSGIRAIVLDEGDE---LVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIGRTT 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV+     +++ VV    I + 
Sbjct: 689 RGVIGIRLNENDFVVGAVVIGDD 711



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L    D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
          Length = 788

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/884 (37%), Positives = 506/884 (57%), Gaps = 98/884 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +I +EM++SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  NK Y K 
Sbjct: 2   KIQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEVMGKYHPHG+ AIY+ LARMAQD+S+R LL++GQGNFGS+DGD PAA RYTE R
Sbjct: 62  ARIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEAR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+  +TVDF PN+DG+ +EPVVL AR PN+L+NG  GIAVGMATN+P HN
Sbjct: 122 LAKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+VD  + +ID+PD D+D L+E ++GPDFPTG  I+G  G+ +AY TG+G I +R   
Sbjct: 182 LSEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTIIGYEGLVDAYRTGKGKIKVRAKY 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +++      +I++ EIPY+VNK+ +L+KIA LVRE ++  I+DL+DESDR+G R+VI++
Sbjct: 242 EVKED-----RIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKV 296

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR  + ++++NQL  +T L+  + +  + L    P    L  ++K ++  R EV+VR+  
Sbjct: 297 KRDMNPEIVVNQLLEHTDLEVTYGIINLVLVDGVPRILNLKELMKEYIRHRMEVLVRKLN 356

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++R H++ GL  A+  +DEV+  I+ S + + A   L+                
Sbjct: 357 YQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLVS--------------- 401

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       +  SEVQ +AIL++RL +LT +  D +  E   L  +IK    +L+S 
Sbjct: 402 ------------LGFSEVQAKAILDMRLQKLTSMEIDALIEENRKLEEDIKNMESLLASE 449

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-IVREDMVVTVSHLGYVKRVPL 553
            +  G+IK+EL  +K+     RRT I +G ++  D +  I  E+ V+ ++  GY++R+ +
Sbjct: 450 EKRYGVIKEELFEIKNLYGDKRRTDIYKGAVERRDIEDLIPNEEAVIILTEKGYIRRLKV 509

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGGKG   +   + D   D+   + H  ++FF+  G VY  K + +P G+ ++
Sbjct: 510 DEYRAQGRGGKGVM-INYGEGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRS 568

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+A+INI+    G  +  ++   +      + Y+ F T++G V+R  L +F     +G 
Sbjct: 569 RGRAIINIIPKL-GSDVIRMLSLNDF-----SGYLFFITRNGIVKRTSLEEFSNPRSTGI 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+  D  DE++ V+      DI L TK G+ +RF    +RV   R + GV GI L  GD
Sbjct: 623 RAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVMG-RTARGVIGIKLQDGD 681

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VIS A+                                                     
Sbjct: 682 EVISSAV----------------------------------------------------- 688

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + +  ++  V   G+GKRT   ++R   R G G+R   +   N    +V      +ND+ 
Sbjct: 689 ESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNAN----VVKSLLTTENDEA 744

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L++  G  IR+ + ++ +  R  +GV +      + VV+V ++
Sbjct: 745 LLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 11/213 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E  +++ T+ G   R  +   R   GR   GV  I+  +GD  +   I      DY
Sbjct: 488 LIPNEEAVIILTEKGYIRRLKVDEYRA-QGRGGKGV-MINYGEGD--LPRDITTANLHDY 543

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE--QFILTVSEK 806
                    +   +     +    +  +   ++   +  +  + L L +   ++  ++  
Sbjct: 544 LMFFTKNGRVYWLKAYEVPEGTRRSRGRAIINIIPKLGSDVIRMLSLNDFSGYLFFITRN 603

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  KRTS  +F  SN    GIRA    + +E   LV V   +  + I L +  G  IR  
Sbjct: 604 GIVKRTSLEEF--SNPRSTGIRAIIFDEDDE---LVDVKITHGGEDIFLFTKYGKAIRFS 658

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +++R+  R  +GV+       + V+S     E
Sbjct: 659 EDDVRVMGRTARGVIGIKLQDGDEVISSAVESE 691



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 94/261 (36%), Gaps = 7/261 (2%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTK 701
            N   V+  T+ G +RR K+ ++    R GK + +     D    + T    + ++  TK
Sbjct: 490 PNEEAVIILTEKGYIRRLKVDEYRAQGRGGKGVMINYGEGDLPRDITTANLHDYLMFFTK 549

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+        +     R S G   I++    ++ S  I + +  D+   + ++      
Sbjct: 550 NGRVYWLKAYEV-PEGTRRSRGRAIINIIP--KLGSDVIRMLSLNDFSGYLFFITRNGIV 606

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           +R    +     S    + +     E    ++    + I   ++ G   R S  D R+  
Sbjct: 607 KRTSLEEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVMG 666

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ +G+    +   +E   +++    ++   +  V   G   R P+ E R   R   GV 
Sbjct: 667 RTARGVIGIKLQDGDE---VISSAVESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVR 723

Query: 882 IFSTAKDERVVSVERIRESEI 902
             S      V S+      E 
Sbjct: 724 NISIRNANVVKSLLTTENDEA 744


>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 844

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/851 (41%), Positives = 529/851 (62%), Gaps = 48/851 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  +  V I+ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  +K
Sbjct: 2   DLNKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ K+TVDF PNYDG   EP V+ AR+PN++VNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNL E +D   AV+D+PDI +  LM+  I+GPDFPTG +ILGR+GI+ AY TGRGSI
Sbjct: 182 IPPHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + R   H+E+    + +IVVTEIPYQVNKA ++ KIA+LVREK++  I  L DES+R G 
Sbjct: 242 ITRSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL++    +V++NQL+R TSLQ+ F VNM+AL    P++  +  +L+ +V  + +V
Sbjct: 302 RIVIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRRT++ L KA DRAH+L GL IA+ ++DE++R+IR S N   AR  LM+R        
Sbjct: 362 VVRRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AILE+RL RLTGL RD I NE   L   I +  
Sbjct: 414 ------------------FKLTEIQANAILEMRLRRLTGLERDKIENEYQELLKTIADLK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++ SR++ IIK EL  VK+    PRRT I E    MEDED I  ED+V+T++  GY+
Sbjct: 456 DILANHSRVIQIIKDELTEVKNRFGDPRRTEISEADYSMEDEDLIPVEDVVITMTTNGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+  YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P 
Sbjct: 516 KRMPIDTYRTQNRGGRGVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPS 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+L++ E++  ++P   +  S    Y++F T++G V+R  +S+F  I
Sbjct: 576 AGRTAKGLPVVNLLNLDKEEKVRALVPVNPESESE---YLLFVTQNGLVKRTPMSEFDSI 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GKIA+ L   DE++ V+  T +++I++    G+ VRF    IR    R + GV+G +
Sbjct: 633 RQNGKIAITLRDDDELMGVKETTGDDEIIIAGSNGKAVRFHEDGIRAMG-RTASGVKGFN 691

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +  G  V+ +A       ++  ++  Y +R    ++    R      T  IT    D   
Sbjct: 692 V-DGSVVVGVATSRDGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGDLVS 750

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              ++          ++ ++ ++  G   R +  +  I +R+ +G++  +V +   +  +
Sbjct: 751 VRAVN---------GDEDVMIITNTGIIIRIAVENIGIYSRNTQGVKLINVGEDESVAKI 801

Query: 842 VAVFPVNDNDQ 852
             V    + + 
Sbjct: 802 AIVDKEEEAED 812



 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 109/265 (41%), Gaps = 18/265 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +  +   +     + ++ V+  G VKR P+S + + R+ GK    + +RD+D +  +
Sbjct: 594 EEKVRALVPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGK--IAITLRDDDELMGV 651

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              +    ++   S G   +     +      A G    N+     G  +  +       
Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGIRAMGRTASGVKGFNV----DGSVVVGV------A 701

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDI 696
           +S +  +++  +++G  +R  + ++    R  K    I +   + D ++SV     + D+
Sbjct: 702 TSRDGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQKTGD-LVSVRAVNGDEDV 760

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           ++ T  G  +R  +  I +++ RN+ GV+ I++ + + V  +AIV   +   D      +
Sbjct: 761 MIITNTGIIIRIAVENIGIYS-RNTQGVKLINVGEDESVAKIAIVDKEEEAEDTAEVSEE 819

Query: 757 HMSAQRRLISGDTEEITSLKNDSSV 781
            +           + +  + N++  
Sbjct: 820 TVENVVESEDSAKDAVEPIDNENKE 844


>gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
 gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
          Length = 859

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/855 (40%), Positives = 517/855 (60%), Gaps = 37/855 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  + ++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEFKENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ+WS R  L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     ++ NPD     LME I GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     +E+I+V E+PY VNKA ++E+IA+L R+KRI  I DL DESDR G R
Sbjct: 243 VRAKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+++R  SA V+LN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  +E V+
Sbjct: 303 VVIDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEIVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y   KA  RAH+L GL IA+ ++DE++RIIR S   + A+  L++          
Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE Q++AIL++R+ RLTGL RD I  E   L   I +  D
Sbjct: 413 ----------------TYGLSEKQSQAILDMRMVRLTGLERDKIEAEYTELMALIADMAD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+  II+ ELL V++     RRT  +V  +L +EDED I  ED+V+T++  GY+
Sbjct: 457 ILANPERVHTIIETELLEVQERFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S +++QRRGG+G  G+ + D+DF+  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPSSEFKSQRRGGRGVQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++ GE +  ++    +      LY+ F T+ G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGVDSGETVQAVINVRGEAE--EGLYLFFTTRLGTVKRTDVKAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++SV     + +I++ T +G  V F    +R    R + GVRGI 
Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFHEKDVRNMG-RTAGGVRGIR 693

Query: 729 LAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L + D VI + ++   ++        Y K   A    I G   +     N +S  GN++ 
Sbjct: 694 LRENDYVIGVDLLTEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKNGNLA- 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI---GALVAV 844
                    ++ I+ ++  G   R +      + R+  G+R   V++  ++     + A 
Sbjct: 753 --GLTTVKGDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEDVKVSTMAKVDAE 810

Query: 845 FPVNDNDQIILVSDK 859
               + D+  ++S+ 
Sbjct: 811 VIKEEMDEAGIISES 825


>gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
 gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
          Length = 859

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/900 (37%), Positives = 520/900 (57%), Gaps = 88/900 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S ++++   +T   I   + ++YL Y+++V +GRAIPD+RDGLKP  RR+LF M ++ +
Sbjct: 1   MSDNQQDFSTVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y+KCAR+ G+V+GKYHPHG+ ++YD + RMAQD+S+R +LI+GQGNFGS+DGD  
Sbjct: 61  RKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+++ A  LL DL K+TVD +P +DGS  EP VL ARYPN+LVNG  GI VG
Sbjct: 121 AAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT+IP HNLGEV++  VA++D P I ++ +M+ + GPDFPT  + +G  GI+  Y TGR
Sbjct: 181 MATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           G + +RG + I      REQIV+TEIPY VNK  M++KIAELV  K I  I+ L DE S 
Sbjct: 241 GGVHLRGRAEI-IEKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSS 299

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G RVV+ +K  A A V++NQLY++T L        + ++  +P+   L  +L+A++  
Sbjct: 300 RVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLDH 359

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EV+ RR K+ L KA  RAH+L GL  AV ++DEV++IIR S N E A  +L +R    
Sbjct: 360 RLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKER---- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS  Q +AIL++RL++LTGL  D++  E   L   I
Sbjct: 416 ----------------------FELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRI 453

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               ++L++R   L ++K+EL+ V+D+    RRT +  G  D+  ED I R    +T+S+
Sbjct: 454 AHYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIARASATITISN 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KRVP  +YR Q RGGKG  G+  +D+DFV  L    TH  ++FF++ G ++  KV+
Sbjct: 514 EGYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVY 573

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  +  ++GKA++N+L   +GE +  ++    D+    + +++ +T++G V++  L+ 
Sbjct: 574 DIPEATRVSKGKAMVNLLEFEKGEYVRAMISV--DKVDDEDRFIMMSTRNGVVKKTALAA 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    A+ LD  D+++  +       I+L+T+ G    F  S  R   GR + G 
Sbjct: 632 FKNMRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRT-QGRVTRGC 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L++ DQV++M+IV  ++                                       
Sbjct: 691 RGIRLSESDQVVAMSIVEESED-------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          IL V+ KG GKR+   D+R++ R  KG+R   + + +    +V V
Sbjct: 713 ---------------ILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKEGD---YVVEV 754

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIV 903
             + D D+II+ + +G ++R+    IR   RA++GV I    K  + ++S  R+ E E  
Sbjct: 755 MMIEDTDEIIMTTMEGLMVRISAEPIRSLGRASQGVTIMKFKKASDLIISASRVVEVEAD 814


>gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 812

 Score =  690 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/893 (39%), Positives = 518/893 (58%), Gaps = 86/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S SI DEM  SY+ Y+++VI+GRAIPD+RDGLKPV R+ILFGM+++G+  N+ Y K
Sbjct: 3   EEIISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEVMGK+HPHG+ AIYDAL RMAQ +S+R  LI+GQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+Q+ A  LL D+ K+TV   PN+DGS  EP VL A+ PN+L+NG  GIAVGM TNIP H
Sbjct: 123 RMQRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V+   A+IDNPD  ++ LME ++GPDFPTG +I+GR GIK  Y TGRG +V+RGV
Sbjct: 183 NLSELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIMGRDGIKKMYETGRGRMVVRGV 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G   +IV++EIPY V+KA ++++IA + +  R + + ++RDESD++G RVVIE
Sbjct: 243 AEIEEAKGG-TRIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           LKRGA  +V+LN LY++T LQ+ F  +M+ ++   +P+   L  I +AF+  R EVV RR
Sbjct: 302 LKRGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L +A  +AH+L GL  A   +D VV IIR S N + A   L +             
Sbjct: 362 TEYELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQE------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T+ ++  Q++AILE+RL +LT L  D +  E   L  +IKE  +ILS
Sbjct: 409 -------------TLEITPEQSQAILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
               +  IIK+EL  ++ +    RRT+I ++G  D   ED I  +++VVTV+  GY+K  
Sbjct: 456 DDKNIYQIIKKELQELEAQYGDARRTKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKAT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  YR Q RGGKG  GV   D DFVT++   +  +  +  +S G  Y    + L   S 
Sbjct: 516 PLEDYRKQGRGGKGIRGVKTTDADFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RGK L N + +   E +  ++    +E    N +++  T+ G ++R     FI    S
Sbjct: 576 SSRGKLLANYVKIEPDETVQAVLSVKREE--VANKHLIITTRKGKIKRTPFEAFINSRTS 633

Query: 672 GKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ L+  D ++      ++E  I+++T+ G  +RFPIS IR    R + GV+ ++L 
Sbjct: 634 GIKAITLNEGDSVVDAGISTSEEETIIISTRKGMVIRFPISQIRPMG-RTAAGVKAMALR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+S  IVL  D                                             
Sbjct: 693 GDDEVVSATIVLPVD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E+++ T +E+G GKRT   ++R  +R+G G++     +    G +V    V + 
Sbjct: 708 ------ERYLFTATERGVGKRTPLSEYRPQHRAGMGVKNIYGLER--TGYVVGSLVVTNE 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+II+++  G  IR+P  +IR   R TKGV +     D+ V S+  + +   V
Sbjct: 760 DEIIVITKNGMSIRIPAADIRPTGRVTKGVKVVELRDDDTVASLAVVVDQAEV 812


>gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57]
          Length = 828

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/896 (39%), Positives = 543/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDKGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISD----------------------------------- 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 711 -----------------DGNKLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 100/263 (38%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + K +E   LV+   V+ N   +++ S  G  I+ P+ ++R   R T
Sbjct: 632 GSNRSYSGIRAIVLDKGDE---LVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREIGRTT 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV+     +++ VV    I + 
Sbjct: 689 RGVIGIRLNENDFVVGAVVISDD 711



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   +D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
 gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
          Length = 850

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/844 (41%), Positives = 513/844 (60%), Gaps = 40/844 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +K + K
Sbjct: 7   DKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EV+ G V +IDN      +  L+ ++EI++GPDFPTGA ILGR GI+ AY TGRG I
Sbjct: 187 NLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V  IE  +  + +IVVTE+PY VNKA ++EKIAELV+EK++  I DLRDES+R+G 
Sbjct: 247 RVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RV IEL+R  +A+V++N+L ++T LQ  F V M+AL   +P    L  +L+ ++  +EEV
Sbjct: 307 RVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYYLQHQEEV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA +RAH+L GL  A+ ++DEV++IIR S N   A+ +LM+R        
Sbjct: 367 VTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AI+++RL  LTGL R+ + NE   L  +I E  
Sbjct: 419 ------------------FALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELK 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+   +LLG+I++E++ + D+    RRT I     DM  ED I  +D+VV +++ GY+
Sbjct: 461 AILADEKKLLGVIREEIIVISDKYGDERRTAIGYDEYDMSAEDLIPDDDVVVAMTNFGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +++Q RGGKG  G+   DED++ DL + + H  V+FF++ G VY+ K + +P 
Sbjct: 521 KRMSSDNFKSQNRGGKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A++N+L L  GE+IT+I+   E E   ++ Y+  AT++G V++  L ++  +
Sbjct: 581 AGRTARGTAIVNLLQLMPGEKITSIIAMKEFE---DDKYLFMATRNGMVKKTSLKEYENV 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DI L TK G C+RF  + +RV  GR S+GV G+ 
Sbjct: 638 RKNGLQAIVLRENDELIEVKRTDNTEDIFLVTKKGMCIRFHETDVRV-TGRVSMGVIGMK 696

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             + D+VI M +    +         Y K    +         +           G++  
Sbjct: 697 FDEDDEVIGMQMSSQGECLLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKIIDKTGDL-- 754

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +L    + I+ ++ +G   + S  D  I  R+  G++   +   + I A+ ++  V
Sbjct: 755 -IGAKLVDNSREIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGI-AVASIAKV 812

Query: 848 NDND 851
            +++
Sbjct: 813 RESE 816


>gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 719

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/677 (69%), Positives = 561/677 (82%), Gaps = 1/677 (0%)

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+E
Sbjct: 2   PDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 61

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           K+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMV
Sbjct: 62  KMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMV 121

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           ALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+R
Sbjct: 122 ALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVIR 181

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR +P+P++AR ELM R W A+D++ LI LIDD  + I  D T  LSE Q RAILELRL
Sbjct: 182 VIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILELRL 241

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           ARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE  TPRRT IV+
Sbjct: 242 ARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIVD 301

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
           G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+
Sbjct: 302 GGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFV 361

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE++
Sbjct: 362 VNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEAN 421

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTK 701
           W+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT 
Sbjct: 422 WDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTERDDVLLTTA 481

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+  ER  Y+K  + +
Sbjct: 482 LGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSATE 541

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           RR    D E+I  +  + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS 
Sbjct: 542 RRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISG 601

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV 
Sbjct: 602 RGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVT 661

Query: 882 IFSTAKDERVVSVERIR 898
           IFSTAKDE+VVSVERI 
Sbjct: 662 IFSTAKDEKVVSVERIS 678



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 110/321 (34%), Gaps = 62/321 (19%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+      EDE      D++ + +  G V+R  LS +    R GK  +  +  + 
Sbjct: 407 ERITTILPLP---EDEANWDNLDVMFSTTR-GTVRRNKLSDFVQVNRNGK-IAMKLEEEG 461

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTI 633
           D +  +   +    VL  ++LG   +  V  + +     + G   +  ++L +G+RI ++
Sbjct: 462 DEILSVETCTERDDVLLTTALGQCIRFSVDDVRVFAGRNSIG---VRGINLGEGDRIISM 518

Query: 634 MPF-----------------------------------------------PEDESSWNNL 646
                                                               +E      
Sbjct: 519 TIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQ 578

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTK 701
           +V+  ++ G  +R+   DF    R GK     D        E+++       + I+L + 
Sbjct: 579 FVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSD 638

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ +R P+  IR+ A R + GV   S AK ++V+S+  +   + D  E        +  
Sbjct: 639 GGQLIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAVETAEGAPV 697

Query: 762 RRLISGDTEEITSLKNDSSVE 782
               S     +        VE
Sbjct: 698 AEEGSVGETPVADGDPAGPVE 718


>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
 gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
          Length = 811

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/843 (40%), Positives = 493/843 (58%), Gaps = 34/843 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E +G+  ++I +EM++ Y+ YA++VI+GRAIPD RDGLKPVHRR L+ M +MG   +K
Sbjct: 2   TSEGEGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD L +MAQ +S R +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL D+ K TVDF PN+D S QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EV +    VID+     + LM+++ GPDFPTG +++G  GI++AY TGRG  V
Sbjct: 182 MPPHNLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGTAGIRDAYLTGRGKCV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RGV+ IE   G   QI++TEIP+QVNKA ++E IA LVR+KRI  I D+RDESDR G R
Sbjct: 242 VRGVAEIE-EEGRTPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELKRGA+  VILN LY++T+L+S F +  +A+   +P    L  I+  F+  R +VV
Sbjct: 301 IVVELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQPRTLNLKEIIHEFLKHRVDVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L K  +R H+L GL +A+ N+D V+  IR S   + A++ L+ +         
Sbjct: 361 RRRTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L EVQ  AIL+++L RL  L    I +E +++  EI+    
Sbjct: 412 -----------------FALDEVQADAILKMQLRRLAALEHQKILDERDAIAAEIERLSA 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S + +L  IK+EL+ +       RRTRI +     + ED I  + ++V+++   YVK
Sbjct: 455 ILASEASILAEIKKELVDIGARFGDERRTRIAQAAEAFDREDLIEDKPVLVSLTSSNYVK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR QRRGG G  G+  +D D V  +F+ + H ++L F+  G +Y  K++ LP G
Sbjct: 515 RIDLDTYRNQRRGGHGVIGMATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +GKAL+N+L+L+  ER+TT++P  E      + ++ FAT++G V +  L +F +  
Sbjct: 575 QRTGKGKALVNLLNLDGEERVTTVIPVREYR---PDHHLFFATRNGTVAKMALDEFSRPR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   D ++ V+      +++LTTK GQ +RF   A+R    RN++GVRGI L
Sbjct: 632 QTGINAINLRDGDALVDVKATDGNQELILTTKFGQSLRFHEEAVRPV-HRNAMGVRGIKL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD + ++AIV            Y K          G          +  V+       
Sbjct: 691 RHGDALQAIAIVEDDHLLTITEQGYGKRTEFDEYRGHGRGTLGVR---NIVVDARAGNVV 747

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  I+ +S  G   RT   +  I  R  +G+R   +   + +     +     
Sbjct: 748 GSMAVSDDDEIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDRVIGFTILDSEEP 807

Query: 850 NDQ 852
            ++
Sbjct: 808 EEE 810


>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
 gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
          Length = 825

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/853 (40%), Positives = 513/853 (60%), Gaps = 37/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT    SS E+  K +  VSI +EM++SYL YA++VI+GRAIPD+RDGLKPVHRR L+ M
Sbjct: 1   MTSEENSSAEQV-KRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG   +K + K ARI GEVMGKYHPHG+++IYD L +MAQ +S R +L+EGQGNFGS+
Sbjct: 60  GEMGNYHDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL+D+ K+TVDF PN+D S QEP+VL A+ PN+LVNG  
Sbjct: 120 DGDSAAAMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSD 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT +P HN+GEV     A+ID+P+I    LME + GPDFPTG VILGR+GI +A
Sbjct: 180 GIAVGMATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVILGRSGIASA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG I +RGV+ IE   G ++ +I+++EIPYQVNKA ++E+IA+LVR+K+I  I+D+
Sbjct: 240 YTTGRGRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDI 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIELK+     V+LNQLY++T L+S F V  +A+   +P+  TL  I++
Sbjct: 300 RDESDKDGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQPKVLTLKEIIQ 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ V+ RRT + L KA DR H+L GL +A+ N+D V+  IR S   E A ++L++
Sbjct: 360 EFLKHRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIE 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E+Q  AIL+++L RL  L +  I +E + 
Sbjct: 420 N--------------------------FGLDEIQADAILKMQLRRLAALEQQKIIDERDG 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  E++    I+S    +   IK+E L + ++    RRT+I   + D++ ED I  + ++
Sbjct: 454 LLKEVERLKLIISDEGHIFAEIKKETLEISEKYSDERRTKISHDVSDLDKEDLIENKQVL 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V+++   Y+K +PL  Y+ Q RGG+G  G+  +DEDFV  +F+ STH  +L F+S G VY
Sbjct: 514 VSLTSHNYIKSMPLDTYKGQHRGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P  + Q+RGKA++N+L L   E++T ++P  E +    + + +FAT +G V +
Sbjct: 574 WLKVYDIPEATRQSRGKAIVNLLELGDEEKVTAVIPVSEFKE---DEFFLFATLNGMVVK 630

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
               +F +  +SG  A+ L   DE++ V       +I+LTT++GQ +RF I +I +   R
Sbjct: 631 IPQVEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILTTRMGQSLRFGIESISLR-HR 689

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N++GV+GI L   D++  +  V            Y K          G            
Sbjct: 690 NALGVKGIKLRYMDELQDVTPVEKDHLLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTD 749

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              G +S     +    ++ I+ +S  G   RT   +  I  R  +G+R   + + + + 
Sbjct: 750 VSGGIVS----SKAVSDDEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLDEGDSVV 805

Query: 840 ALVAVFPVNDNDQ 852
               +   ++ D+
Sbjct: 806 GFT-ILDSDEGDE 817


>gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/842 (41%), Positives = 528/842 (62%), Gaps = 34/842 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGM TNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +  +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVWSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD V+  +++   D         Y K   A      G   +     N +   G +S   
Sbjct: 693 EGDTVVGASVITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKNGPLSGLL 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    ++ ++ +++ G   RT+  +   + RS  G++   + +  +I     V     
Sbjct: 753 TVK---GDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEK 809

Query: 850 ND 851
            +
Sbjct: 810 EE 811


>gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30]
          Length = 828

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/896 (40%), Positives = 551/896 (61%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRTKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR I+ S +PE A+  L++R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F      SG  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R    
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIG- 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GVRGI L + D V+  A+V++ D++                               
Sbjct: 686 RSARGVRGIKLNENDFVVG-AVVINDDSNK------------------------------ 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IR+ + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRISIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 99/263 (37%), Gaps = 61/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ     +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++ G  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKNGVVKRTNLSEF- 631

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            SNRS  GIRA  + + +E   LV+   V+ N   +++ S  G  I+ P+ ++R   R+ 
Sbjct: 632 GSNRSYSGIRAIVLDEGDE---LVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREIGRSA 688

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV      +++ VV    I + 
Sbjct: 689 RGVRGIKLNENDFVVGAVVINDD 711



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+     +Q  ++    K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEV---AKNALIERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   +D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L  + V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611


>gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
 gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
          Length = 862

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/901 (40%), Positives = 542/901 (60%), Gaps = 69/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT + I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +G  WN+ Y K
Sbjct: 6   KEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRSYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ A+Y+A+ RMAQ + +R  LI+GQGNFGSVDGDP AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A+ LL DL K+TVD+  NYDG+ Q P +L  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI +D+LM+ I GPDFP+ A+I    G+K AY TGRG I IR  
Sbjct: 186 NLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYRGLKEAYETGRGKIYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           S IE      RE IV+ EIPYQ+NK+ +LEKIAELV+ KRI  I +LRDESD+ G R+VI
Sbjct: 246 SEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ++K  A ++++LN LY  TSLQ  F +NMVAL+  +P+  +L  IL AFV  R  ++ RR
Sbjct: 306 DIKHDAISEIVLNNLYSLTSLQISFGINMVALHNGQPKTMSLKDILSAFVCHRRSIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L KA +R HVL GL +A++N+D V+ +I+ + +   A  EL  + W +++I ++  
Sbjct: 366 IMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNNIINMRK 425

Query: 433 LIDDS--------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            I           +  I  D   Y ++ Q +AILELRL +LT L  + +  E  ++  ++
Sbjct: 426 KISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYENVLKKM 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVS 543
           +  + +L + S L+G+I+QEL+S+K+E + PRRT I E ++   D + ++ + D+VVT+S
Sbjct: 486 ENLICVLQNPSSLMGLIRQELVSIKEEYNDPRRTEISENIVSNIDLENLINQRDVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y  KV
Sbjct: 546 YQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +RLP  +  +RG+             I  ++P   +E                       
Sbjct: 606 YRLPKANKGSRGRP------------IINLLPLDTNERIT-------------------- 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                               IL V+  T  + + + T  G   +  +     F+   +VG
Sbjct: 634 -------------------VILPVQNYTTGHQVFMATSSGFVKKTALME---FSRPRNVG 671

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +  ++L  GD++I   I  + D +      Y K +  Q   +       + ++    ++G
Sbjct: 672 IIALNLNNGDELIGADIT-NGDNEVMLFTAYGKVVRFQETQVRSMGRSASGVRGVHLLQG 730

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   +  ILTV+E GFGKRT+  ++ + +R+ +G+ +  V++ N  G +V 
Sbjct: 731 --DRVVSLIIPKDQSSILTVTENGFGKRTNQSEYPLKSRAIQGVISIKVTERN--GNVVG 786

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+  DQI++V+D G L+R+ V+E+ I  R T+GV++  TA DE VV ++R+ ES  +
Sbjct: 787 AVQVDQGDQIMIVTDSGRLVRIRVSEVNIIKRNTQGVMLIRTACDEHVVGLQRVVESVEI 846

Query: 904 D 904
           +
Sbjct: 847 E 847



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 22/242 (9%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            R T I+                 V   +  G+VK+  L  +   R    G   + + + 
Sbjct: 630 ERITVILP-------VQNYTTGHQVFMATSSGFVKKTALMEFSRPR--NVGIIALNLNNG 680

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +    I +    V+ F++ G V + +  ++      A G   +++L   QG+R+ +++
Sbjct: 681 DELIGADITNGDNEVMLFTAYGKVVRFQETQVRSMGRSASGVRGVHLL---QGDRVVSLI 737

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCT 691
             P+D+SS     ++  T++G  +R   S++   +R+  G I++K+      ++      
Sbjct: 738 -IPKDQSS-----ILTVTENGFGKRTNQSEYPLKSRAIQGVISIKVTERNGNVVGAVQVD 791

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           Q + I++ T  G+ VR  +S + +   RN+ GV  I  A  + V+ +  V+ +     +R
Sbjct: 792 QGDQIMIVTDSGRLVRIRVSEVNII-KRNTQGVMLIRTACDEHVVGLQRVVESVEIEKKR 850

Query: 752 IC 753
             
Sbjct: 851 YS 852


>gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           agalactiae ATCC 13813]
          Length = 819

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/841 (42%), Positives = 532/841 (63%), Gaps = 34/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT + V  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+     +    N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINAR--KEDVANKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R    R + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMG-RTATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + IV   +        Y K   A      G   +     N ++  G ++   
Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ +++ G   RT+  +   + RS  G++   + +  +I  +  V    +
Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALVEQEIE 809

Query: 850 N 850
           +
Sbjct: 810 D 810


>gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
 gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A
 gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
          Length = 857

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/856 (38%), Positives = 486/856 (56%), Gaps = 57/856 (6%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
                +     +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G
Sbjct: 2   TTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
               + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 62  YRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDP 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAV
Sbjct: 122 AAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNA 240
           GMATNIP HNL EV  G    ++N +   + L+    E I+GPDFPTGA+++GR GI+ A
Sbjct: 182 GMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEA 241

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+R
Sbjct: 242 YRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVR 300

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE S R G R+VI LKR A A V+LN LY++T LQS F  NM+AL    P   +L   ++
Sbjct: 301 DETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIR 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM 
Sbjct: 361 HWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMD 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                      + + E+Q  AILE++L RL  L R  I  E + 
Sbjct: 421 --------------------------LLEIDEIQANAILEMQLRRLAALERQKIVREHDE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+V
Sbjct: 455 LQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY
Sbjct: 515 VTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVY 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + LP     ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++
Sbjct: 575 RAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKK 631

Query: 660 NKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             L D+      G IA+ L        DE++  E  + E+D+LL +K  Q +RF  S   
Sbjct: 632 TPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDT 691

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVL-------HADADYDERICYMKHMSAQRRLIS 766
           +   GR + GV+G+S  +GD+++SM +V          D  Y +R    ++    R  + 
Sbjct: 692 LRPMGRATSGVKGMSFREGDELLSMNVVRAGTFVFTATDGGYAKRTSVDEYRVQGRGGLG 751

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +I   +        + E            IL ++  G   RT     R + R   G
Sbjct: 752 IKAAKIVEDRGSLVGALVVEE---------HDEILAITLSGGVIRTRVNGVRETGRDTMG 802

Query: 827 IRATDVSKINEIGALV 842
           ++  ++ K + +  + 
Sbjct: 803 VQLINLGKRDAVVGIA 818



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 18/265 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E +  +           +V  +  G VK+ PL  Y + R G  G   + +R+     +D 
Sbjct: 603 ETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSG--GVIAINLREQADGSDDE 660

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++   
Sbjct: 661 LIGAELVSAEDDLLLISKKAQSIRFTASDDTL-RPMGRATSGVKGMSFREGDELLSMNVV 719

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + 
Sbjct: 720 RA------GTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEH 773

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E   
Sbjct: 774 DEILAITLSGGVIRTRVNGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDG 832

Query: 754 YMKHMSAQRRLISGDTEEITSLKND 778
            +          +  T+E  +   +
Sbjct: 833 DVAVDETAEGAATTGTDEGEAPSAE 857


>gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
 gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
          Length = 845

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/847 (41%), Positives = 519/847 (61%), Gaps = 38/847 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD   N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A I+N DI++D LM+ I  PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIYGYDGVREAFKTGRGRVVLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE I+V+EIPYQVNKA M++K A+LV EK+I  IA +RDESDR+G R+V
Sbjct: 243 AKAIIEEVK-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN L++YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGRPEMLNLKDMIHHFVDHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DRAH+L GL IA  N+DEV+ +IR S N E AR++L+ R           
Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +R E   L   I++  DIL
Sbjct: 411 ---------------FELTEIQARAIVEMRLRQLTGLEQDKLREEYEELLKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL  ++ +    RRT I     D+   D I  E +V+T+SH GYVKR 
Sbjct: 456 ARKERRMDIIKEELEEIRAKYGDERRTDIDIAGGDVSITDLIPDEKVVLTISHAGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG G+ G   R+EDF+  LF+ + H  ++FF+  G  +  +V+ +P GS 
Sbjct: 516 SLMEYKTQNRGGVGQKGSTTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEPDDKVKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L+ +  T ++ ++L  K G+ +RF     R    RN+ GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLAAKLTTGDSQVMLAVKSGKAIRFEEEKTRPMG-RNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           A   D+VI M  V   +++        Y K    +   ++    +     + +   GN+ 
Sbjct: 695 ADDNDEVIGMVAVNDPESNVLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTEKTGNLV 754

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  ++ +++ G   R    + R+  R+ +G+R  ++ K + I A+  V  
Sbjct: 755 AINNV---TDEDDLMIINKSGIAIRMEVSELRVMGRATQGVRLINLKKGDTIAAVTKVK- 810

Query: 847 VNDNDQI 853
             D D I
Sbjct: 811 -KDEDDI 816


>gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 857

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/866 (39%), Positives = 533/866 (61%), Gaps = 60/866 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MEDNIF-------DKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EVVD  V +ID       +  ++ +++I++GPDFPTGA+ILGR 
Sbjct: 174 GIAVGMATNIPPHNLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMILGRR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V++IE     + +I+VTE+PY VNKA ++ KIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY----KPER 351
           I DL D S R+G R+ I+L++ A+A+V+LN LY++T LQ  F VNM++L       +P+ 
Sbjct: 294 ITDLNDHSSREGMRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKV 353

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ ++A +E+VV RRTKY LNKAR+RAH+L GL  A+ N+DEV+RIIR S N +
Sbjct: 354 LNLKQMLEYYLAHQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQ 413

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A++ELM R                            L++VQ +AI+++RL  LTGL R+
Sbjct: 414 IAKQELMDR--------------------------FELTDVQAQAIVDMRLRALTGLERE 447

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E   L  +I++   IL+ RS LL +I++E+L++ ++    R+T I   + D+  ED
Sbjct: 448 KLEAEYADLMEKIRKYEAILADRSLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTED 507

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE+ V+T++ LGY+KR+ +  +R+Q RGG+G  G+   ++D++ +L + +TH  ++F
Sbjct: 508 LIPRENTVITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLEDDYIEELLMTTTHHYLMF 567

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + +P     ARG A+IN+L L  GE IT ++P  + E   +  Y++ A
Sbjct: 568 FTNTGRVYRLKAYEIPEAGRTARGTAIINLLQLMPGECITAVIPLRKFE---DGHYLMMA 624

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK+G V++  + ++  + ++G  A+ L   DE++ V+    + DI+L TK G C+RF  +
Sbjct: 625 TKNGLVKKTPIKEYANVRKNGLAAITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKET 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQRRLI 765
            +R   GR S+GVRG+++  GD+V++M +    D      A+   +   M   + Q R  
Sbjct: 685 DVRS-TGRTSMGVRGMNIDDGDEVVAMQLNSQGDCLLIVSANGMGKRTSMGEFTCQNRGG 743

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            G      + K    +      E        +  ++ ++ +G   R +  D  I  R   
Sbjct: 744 KGVKCYKITEKTGDVIGARAVNE--------DNEVMLITTEGIIIRIACADISILGRITS 795

Query: 826 GIRATDVSKINEIGALVAVFPVNDND 851
           G++  ++++   + ++  V    + D
Sbjct: 796 GVKLINLTEGVTVASVAKVRDKEEKD 821


>gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Streptomyces coelicolor
 gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093585|prf||2104262E DNA gyrase
          Length = 864

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/864 (38%), Positives = 488/864 (56%), Gaps = 61/864 (7%)

Query: 1   MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+        E       +  V +  EMQ SYL YA++VI+ RA+P +RDGLKPVHRR+
Sbjct: 1   MTDENTPVTTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++N +   + L+    E I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                            + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARGGLMD--------------------------LLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED
Sbjct: 454 KIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I    + E+     Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + E+D+LL +K  Q +
Sbjct: 631 TKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSI 690

Query: 707 RFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVL-------HADADYDERICYMKHM 758
           RF  S   +   GR + GV+G+S  +GD+++SM +V          D  Y +R    ++ 
Sbjct: 691 RFTASDDTLRPMGRATSGVKGMSFREGDELLSMNVVRAGTFVFTATDGGYAKRTSVDEYR 750

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
              R  +     +I   +        + E            IL ++  G   RT     R
Sbjct: 751 VQGRGGLGIKAAKIVEDRGSLVGALVVEE---------HDEILAITLSGGVIRTRVNGVR 801

Query: 819 ISNRSGKGIRATDVSKINEIGALV 842
            + R   G++  ++ K + +  + 
Sbjct: 802 ETGRDTMGVQLINLGKRDAVVGIA 825



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 18/265 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E +  +           +V  +  G VK+ PL  Y + R G  G   + +R+     +D 
Sbjct: 610 ETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSG--GVIAINLREQADGSDDE 667

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++   
Sbjct: 668 LIGAELVSAEDDLLLISKKAQSIRFTASDDTL-RPMGRATSGVKGMSFREGDELLSMNVV 726

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + 
Sbjct: 727 RA------GTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEH 780

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E   
Sbjct: 781 DEILAITLSGGVIRTRVNGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDG 839

Query: 754 YMKHMSAQRRLISGDTEEITSLKND 778
            +          +  T+E  +   +
Sbjct: 840 DVAVDETAEGAATTGTDEGEAPSAE 864


>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
 gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
          Length = 850

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/871 (40%), Positives = 526/871 (60%), Gaps = 37/871 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E      E  E+      +   M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MSEE--KDLEFFEEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R  LI+G GNFGSV
Sbjct: 59  HELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDT+++R NYD + +EP VL +R PN+LVNG  
Sbjct: 119 DGDSPAAMRYTEARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGAT 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+LGEV+     ++ NPD+    LME++ GPDFPTG ++LG++GI+ A
Sbjct: 179 GIAVGMATNIPPHHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVLGKSGIRRA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +RG   IE+    +E+I++TE+PY VNKA ++E+I++L  EK+I  I  L 
Sbjct: 239 YETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLN 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIE++R  SA V+LN LY+ T LQS F  NM+A+ G +P+  +L  IL+ 
Sbjct: 299 DESDRKGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVGQEPKILSLKEILRH 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEV+ RR+ +   KA DRAH+L GL +A+ ++D +V I+R S + + A+   M  
Sbjct: 359 YLNHQEEVIRRRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNE 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++R+ RLTGL R+ I  E   L
Sbjct: 419 --------------------------YGLSDKQAQAILDMRMVRLTGLEREKIDAEYADL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMV 539
              IKE  +IL+S  R   II+QELL ++ + D PRRT  +V   L +EDED I +ED+V
Sbjct: 453 QALIKELNEILASEERRYEIIEQELLEIQQKFDNPRRTELLVGEALSLEDEDLIEQEDVV 512

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++  GY+KR+  S ++ QRRGG+G  G+ + D+DFV ++   STH S+LFF++ G VY
Sbjct: 513 ITLTKNGYIKRLANSEFKTQRRGGRGVQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVY 572

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  A+G  +IN+L+++  E+I  I+  PE + +    ++ F T  G V+R
Sbjct: 573 QAKGYEIPEYSRTAKGLPVINLLNIDSTEKIQAIISVPESDET--ERFLFFTTLRGTVKR 630

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            KLSDF  I  +G  A++L   D+++ V   + ++ I+L T  G  V F    +R    R
Sbjct: 631 VKLSDFKNIRTNGLRAIQLREDDQLIRVVVTSGQDGIILGTYHGNAVTFHEEKVRAMG-R 689

Query: 720 NSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GVRG+SL   D VI M I+    +        Y K  +A    + G   +       
Sbjct: 690 TAAGVRGVSLRDDDYVIGMDILTPEREVLVVSEKGYGKRTAASEYALKGRGGKGVKTLRI 749

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +   G +    C      E+ ++ ++ KG   R  + D   + R   G+R   + +   +
Sbjct: 750 TEKNGPL---VCLRTVTGEEDLMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIV 806

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            +L  V    + ++  + S + T++   V E
Sbjct: 807 SSLAIVDREEEAEE-TVTSSEETVVSEKVTE 836


>gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316]
 gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
 gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316]
 gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/841 (42%), Positives = 532/841 (63%), Gaps = 34/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+     +    N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINAR--KEDVANKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R    R + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMG-RTATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + IV   +        Y K   A      G   +     N ++  G ++   
Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ +++ G   RT+  +   + RS  G++   + +  +I  +  V    +
Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALVEQEIE 809

Query: 850 N 850
           +
Sbjct: 810 D 810


>gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Haloferax sp
 gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2]
          Length = 858

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/901 (40%), Positives = 519/901 (57%), Gaps = 79/901 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV  N  + K 
Sbjct: 18  EVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKS 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + I GE MG YHPHG++AIYD LARMA+D+S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 78  SSIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 137

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LLDD+ KDTVDF+ NYD   QEP VL + +PN+LVNG  GIAVGM+TNIP HN
Sbjct: 138 MSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHN 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  V +I+NPD  +  LME I+GPDFPTGA I+ R  +  AY TGRG + +R   
Sbjct: 198 LGEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVARNAVHKAYKTGRGRVRVRADY 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            + +  G   +IV+ E+PYQ NKA ++E+IA+ V E +I  I D+RDES+R G RVVIEL
Sbjct: 258 DVFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESERDGIRVVIEL 314

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA A+V+ NQL     L+S F V  +AL   +P+  TL   L+ ++  R +VV RR++
Sbjct: 315 KRGAMAEVVKNQLL-DNHLESTFGVINLALVDGQPQVLTLKETLEHYLDHRRDVVRRRSE 373

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L        D + L    
Sbjct: 374 YELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVDGEPL---- 429

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   SE Q   I+ ++L  LT +   +I  E   +   I+    IL  +
Sbjct: 430 ----------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQ 479

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S L  +I+ ELL +KDE    RRT  V    ++   D I  ED+VV VS   Y+KR+P+S
Sbjct: 480 SELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVS 539

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +RAQ RGGKG  G  +++ D V+ +F+ +TH  +L F++ G VY+ K +++P  S  AR
Sbjct: 540 RFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTAR 599

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK+ +N+L  + GE IT ++   + E      Y+   T++G ++R     F  I  +G I
Sbjct: 600 GKSAVNLLDFDDGEEITAVVNCDDLEDIEG--YLTMVTRNGYIKRTGTDRFQNILSTGII 657

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A KLD  DE++ VE    E D+++ T+ G  +RF    +R    R++ GVRGI L   D 
Sbjct: 658 ATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAMG-RSARGVRGIKLEGDDV 716

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +A +  A                                                  
Sbjct: 717 VAGVAAIDEA-------------------------------------------------- 726

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               +ILTV+E G+GKRT    +R  +R+GKG+     ++ N  G + A+  V + D ++
Sbjct: 727 -HHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERN--GPVCAINTVGEGDHLV 783

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-----ESEIVDEAEST 909
           ++SD+G ++R PV +I    R T G+++    + + V SV+ I      E+E +D+A+S 
Sbjct: 784 VMSDEGQILRTPVEDISTVGRNTMGIIVMDLDEGDAVASVDVIPAAMTTEAEELDDADSV 843

Query: 910 E 910
           E
Sbjct: 844 E 844


>gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
 gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
          Length = 818

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/898 (38%), Positives = 504/898 (56%), Gaps = 85/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + E    +  + I DE++ +++ Y+++VI+ RA+PD RDGLKPVHRRI++ M +  +  
Sbjct: 2   ENTENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             K  KCA I G+V+GKYHPHG+A++YDAL R+ QD+S R +++   GNFG++ GDPPAA
Sbjct: 62  GGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +++D+ KDTVD  PNYD + +EP VL +++P +L NG  GIAVGMA
Sbjct: 122 YRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV     A IDN +I +D L+  I+GPDFPTG +I G+ GI +AY TGRG 
Sbjct: 182 TNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIFGKHGIADAYRTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306
           I++RG  +IE +    E IV TE+PY VN   + EKI EL R+K I  I+ + DE SDR 
Sbjct: 242 ILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDRS 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI LKRGA   V++NQL+  T+LQS F V  +AL   +P+   L  I+K FV  R+
Sbjct: 302 GMRIVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVKGRPQILNLKQIIKCFVDHRD 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RR  + LNKAR R H+L  L  AV  +DEV+++IR S +   A+  LMQR      
Sbjct: 362 EVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                   E+Q  AI+E+RL RLT L  D++R E+  +   I  
Sbjct: 416 --------------------FGFDEIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAH 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHL 545
           C D+L+   ++L IIK E   + ++    R+T IV G ++ +  ED I  EDMV+ +S L
Sbjct: 456 CEDLLAHHEKILAIIKDETNELSEKYGDDRKTDIVAGEVESINVEDLIKEEDMVILISKL 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRV +S Y++Q RGGKG     + +ED++  +F+ STH  ++F ++ G  Y  KV  
Sbjct: 516 GYIKRVSVSQYKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHE 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  +RG  + ++L++N  E ITTI+   E      N Y+  AT +G V++   SDF
Sbjct: 576 IPEASKTSRGSHIKSLLAVNANEDITTIVSLKE---FSENNYLFMATANGVVKKTPTSDF 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 G  A++LD  D ++S    T ++++LL ++ GQ +R     +R    R+S GV 
Sbjct: 633 KNAKSRGMQAVRLDEGDTLVSAILSTGKDELLLVSRRGQALRINEEDVRPMG-RSSRGVA 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L++GD++ S AI +H + D                                      
Sbjct: 692 GLKLSEGDELCS-AIRIHTEPDSK------------------------------------ 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         IL V+EKG GKR  S +F    R   G +      + + G ++   
Sbjct: 715 --------------ILVVTEKGIGKRVDSAEFNAHGRGTGGQKI--FGNVEDKGEIIGAL 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V D D I+ ++ +GT +RV   +I +  R   G+ + S    + VV V+RI   E  
Sbjct: 759 CVRDTDSIMCITSQGTSVRVEAKDITVQGRGASGIKVVSITDPDYVVGVDRIANDEDE 816



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         + +   +  G VK+ P S ++  +   +G   V + + D +    
Sbjct: 598 EDITTIVSLKEFSENNYLFMATANGVVKKTPTSDFKNAKS--RGMQAVRLDEGDTLVSAI 655

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +    +L  S  G   +     +      +RG A    L L++G+ + + +    +  
Sbjct: 656 LSTGKDELLLVSRRGQALRINEEDVRPMGRSSRGVA---GLKLSEGDELCSAIRIHTEPD 712

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
           S     ++  T+ G  +R   ++F    R     KI   ++ + EI+        + I+ 
Sbjct: 713 SK----ILVVTEKGIGKRVDSAEFNAHGRGTGGQKIFGNVEDKGEIIGALCVRDTDSIMC 768

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            T  G  VR     I    GR + G++ +S+   D V+ +  + + + +  
Sbjct: 769 ITSQGTSVRVEAKDI-TVQGRGASGIKVVSITDPDYVVGVDRIANDEDEKK 818


>gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
 gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
          Length = 834

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/846 (40%), Positives = 516/846 (60%), Gaps = 39/846 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  + +       IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MAEQDMPN------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV
Sbjct: 55  NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K A  +L D+ K+TVDF  NYDG+ +EP VL AR+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++G   +++NPDI  + LM+ I GPDFPTG V++G++GI+ A
Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+I++R    IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ 
Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ 
Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM  
Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNN 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R+ I +E   L
Sbjct: 415 --------------------------YGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I +  DIL+ R R+  II  EL+ ++      RRT + V  + ++EDED I  ED++
Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++H GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY
Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P     A+G  +IN+L +N  E+I+ ++     E++ ++ Y+ F TK G V+R
Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +++F  I  +G  A+ L   DE++ VE  +++  +++ T  G  + F  S +R    R
Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMG-R 686

Query: 720 NSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           ++ GVRGI L   D VI  A +   +         + K  SA    I G         N 
Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNV 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++  G +           ++ I+ V+++G   R        + RS  G+    +     +
Sbjct: 747 TAKNGPL---VGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGARV 803

Query: 839 GALVAV 844
             +  V
Sbjct: 804 ATIAKV 809


>gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 821

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/900 (36%), Positives = 528/900 (58%), Gaps = 86/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  I  V I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G   ++
Sbjct: 3   DNNQDRIIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQ 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  G+V+GKYHPHG++++Y AL RMAQ+W LR  L++GQGNFGS+DGD PAA R
Sbjct: 63  PYKKSARTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  +L D+ K+TVDF  N+D + +EP VL  R P +L+NG  GIAVGMATN
Sbjct: 123 YTEARLGNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E ++G +A ID+  +ID+D LM+ I+ PDFPTGA I G  GI+  +  G+G I
Sbjct: 183 MPPHNLTECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIYGFQGIREVFEVGKGRI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++RG   IE    ++E+IV+ EIPY VNK  ++E IA LV EK++  +  + DESDR+G 
Sbjct: 243 LLRGKVEIE-IHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+++K+  ++ V+LN+LY+ T+L+S F+VN +AL   +P    L  ++  FV  R EV
Sbjct: 302 RIVVDVKKDFNSGVLLNKLYKLTALESSFNVNNIALVNGRPRTLNLKELICYFVEHRVEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRRT+Y LN+   R H++ GL IA  ++DE+V II  S NP  A   L  R        
Sbjct: 362 VVRRTQYDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEAIDRLSGR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q+RAI+E+RL +LTGL +D +R E   L   I    
Sbjct: 414 ------------------FDLTEIQSRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILS+R+ L+ IIK EL+ V+D     R+T IV    D   +D    ++M++T+SHLGY+
Sbjct: 456 EILSNRNILMKIIKDELIEVRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL  +RAQ RGG G     +RD+DFV  ++  + H  +LFF+  G  Y  KV+++P 
Sbjct: 516 KRTPLVDFRAQNRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPA 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G+  ++G+A+ N+L+++  ++++  +      D+    + Y+VF TK G +++  L+ + 
Sbjct: 576 GAKTSKGRAIQNLLNIDTNDKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE+++V+     N+I++  + G+ +RF  + +R    R + GV  
Sbjct: 636 RPRQNGVKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRFNENKVRSMG-RLAAGVIS 694

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           ++L    D++I M I+   D   +  +   +    +R  +                    
Sbjct: 695 MTLDLVDDEIIGMIII--NDKKRENVLVVSEQGYGKRSRVG------------------- 733

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                                         D+RI NR GKGI+  ++++  + G LV++ 
Sbjct: 734 ------------------------------DYRIVNRGGKGIKTLNITE--KTGFLVSIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V +++ +++++  G  IR+ V+++ +  RAT+GV + +  K  + + SV ++     ++
Sbjct: 762 NVTEHNDVMIINKSGIAIRIKVSDLNVIGRATQGVRLINLEKRGDEIASVCKVMSETDLE 821


>gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5]
 gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5]
          Length = 833

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/844 (40%), Positives = 523/844 (61%), Gaps = 51/844 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +K + K
Sbjct: 7   DKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 127 RLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDL-----DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL EV+   V +ID+   +      + +++II+GPDFPTGA ILG  GI+ AY TGRG I
Sbjct: 187 NLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTRGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R +++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S+R+G 
Sbjct: 247 RVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +L+ ++  +EEV
Sbjct: 307 RICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLRLYLKHQEEV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA +RAH+L GL IA+ ++DEV++IIR S N + A+ EL+ R        
Sbjct: 367 VTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIAR-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++VQ +AI+++RL  LTGL R+ + +E   L  +I E  
Sbjct: 419 ------------------FDLTDVQAQAIVDMRLRALTGLEREKLESEYEELMKKIGELK 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+ R  LL +I++E+L + D+    RRT I     D+  ED I RE++V+T++ LGY+
Sbjct: 461 AILADRKLLLSVIREEILIINDKYGDERRTSIGFDEFDISMEDLIPRENVVITMTKLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  +++Q RGGKG  G+   DED++ +LFI STH  ++FF++ G VY+ K + +P 
Sbjct: 521 KRMTVDTFKSQNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG A+INIL L   E+IT ++P  E E   +  ++  AT+ G V++  ++D+  +
Sbjct: 581 ASRTARGTAIINILQLMPDEKITAMIPIKEYE---DGKFLFMATEKGLVKKTPITDYANV 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   D ++ V+    E DI+L TK GQC+RF    +R   GR S+GVRG++
Sbjct: 638 RKTGLAAITLREDDRLIEVKITDNEEDIVLVTKYGQCIRFSEKDVRA-TGRTSMGVRGMN 696

Query: 729 LAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L+  D+VI+M        +++ +D    +R    +  +  R        +IT    +   
Sbjct: 697 LSDRDEVIAMQMSTQGSDLLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITEKTGNVVG 756

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              ++E         +  I+ ++ +G   R    D  +  R   G++  ++++ + + ++
Sbjct: 757 MKAVNE---------DSEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVASV 807

Query: 842 VAVF 845
             V 
Sbjct: 808 AKVR 811


>gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A
 gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 813

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/884 (36%), Positives = 486/884 (54%), Gaps = 87/884 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +SI  E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++    KCA
Sbjct: 12  LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+V+G +HPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RYTE ++
Sbjct: 72  KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +++D+ K+TV F PN+D S  EP VL  R+P +L NG  GIAVGM TN+P HNL
Sbjct: 132 ARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+     A I+NP++ +  L + I GPDFPTG +I G+ GI+ +Y TGRG IV+R    
Sbjct: 192 REIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARFT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIEL 314
           IE  S  R+ I+ TE+PYQVN   ++ +I EL R K I  IA++ DE SDR G R+V+EL
Sbjct: 252 IETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+G  A V+LN L+  T LQS F+V  +AL   +P   TL  +++ FV  R +VV RR  
Sbjct: 312 KKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRAH 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++R H++  L  A+  +D+++ +IR S N E A++ L ++              
Sbjct: 372 FELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQ-------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                            VQ +AI+++++ RLTGL  + +R EL  L   I    ++L+S 
Sbjct: 418 ------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELISSLEELLTSP 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++LG++K+E   + D     RRT IV   ++ ++ ED I +E+MV+ +SHLGY+KRVP+
Sbjct: 466 QKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPV 525

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR Q RGGKG S   +   DF++ +F  STH  V+F +S G  Y  KV+ +P      
Sbjct: 526 SAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRAN 585

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  + ++L +   E IT I+   E     N  YV  AT  G V++    +F+     G 
Sbjct: 586 RGSHIKSLLMVATDEEITAIVSLRE---FSNKSYVFMATARGVVKKVTTDNFVNAKTRGI 642

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+KL   D ++S      E++++L T+ G+ +R     +R    RNS GV GI L   D
Sbjct: 643 IALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMG-RNSSGVIGIKLTSED 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V  +  V                                                    
Sbjct: 702 LVAGVLRVSEQ------------------------------------------------- 712

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             ++  I+T +  G  KR S  +F +  R   G +    ++ +  GA++    V D D+ 
Sbjct: 713 --RKVLIMTENGYG--KRVSFSEFSVHGRGTAGQKIY--TQTDRKGAIIGALAVLDTDEC 766

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + ++ +G  IRV V  I +  R  +GV +      + VV +  +
Sbjct: 767 MCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCV 810



 Score = 98.8 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 11/215 (5%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD---- 745
             +E  ++L + LG   R P+SA R    R   G    +LA  D +  +      D    
Sbjct: 505 IQKEEMVILISHLGYIKRVPVSAYR-NQNRGGKGSSSANLAAHDFISQIFTASTHDYVMF 563

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                R  ++K         +     I SL   ++ E   +    +E   K  ++   + 
Sbjct: 564 VTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKS-YVFMATA 622

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+ ++ +F   N   +GI A  +S  +    LV+   V D D+++L++ +G  +R+
Sbjct: 623 RGVVKKVTTDNF--VNAKTRGIIALKLSGGD---TLVSAVLVQDEDEVMLITRQGKALRM 677

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              E+R   R + GV+      ++ V  V R+ E 
Sbjct: 678 SGREVREMGRNSSGVIGIKLTSEDLVAGVLRVSEQ 712



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V    +   +   +G   + +   D +    
Sbjct: 600 EEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAK--TRGIIALKLSGGDTLVSAV 657

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V     V+  +  G   +     +      + G   +  + L   + +  ++   E   
Sbjct: 658 LVQDEDEVMLITRQGKALRMSGREVREMGRNSSG---VIGIKLTSEDLVAGVLRVSEQRK 714

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                 V+  T++G  +R   S+F    R     KI  + D +  I+        ++ + 
Sbjct: 715 ------VLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGALAVLDTDECMC 768

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G+ +R  + AI V   R + GVR + +   D V+ ++ V+  
Sbjct: 769 ITGQGKTIRVDVCAISVLG-RGAQGVRVLDIEPSDLVVGLSCVMQG 813



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 68/197 (34%), Gaps = 59/197 (29%)

Query: 764 LISGDTEEITSLKNDSSVEGNISEE----RCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           ++  +T +I  +  D      +S E      ++   KE+ ++ +S  G+ KR     +R 
Sbjct: 471 VVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRN 530

Query: 820 SNRSGKGIRATDVSKI--------------------------------------NEIGAL 841
            NR GKG  + +++                                        N    +
Sbjct: 531 QNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHI 590

Query: 842 VAVFPVNDNDQIILV---------------SDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
            ++  V  +++I  +               + +G + +V  +    A   T+G++    +
Sbjct: 591 KSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAK--TRGIIALKLS 648

Query: 887 KDERVVSVERIRESEIV 903
             + +VS   +++ + V
Sbjct: 649 GGDTLVSAVLVQDEDEV 665


>gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20]
          Length = 826

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/895 (40%), Positives = 552/895 (61%), Gaps = 95/895 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL+  E+I   +   +     +   + F TK G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLDPDEKIMATLSTKD---FSDERSLAFFTKKGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F   N +G  A+ LD  DE++S +   +    +L+ + LG  ++F +  +R    R
Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREIG-R 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GV GI L + D V+  A+V++ D++                                
Sbjct: 685 STRGVIGIKLNENDFVVG-AVVINDDSNK------------------------------- 712

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 750

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
            LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 803



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKNALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   +D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L R+ V +I  ASR   G   V + S   DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLDPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 63/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ  R  +  I   A R ++G   V  ISL   +++  MA +   D   +  + +    
Sbjct: 564 KGQLYRLKVYKI-PEASRIAMGKAIVNLISLDPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++KG  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKKGVVKRTNLSEFD 632

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            +      +RA  + + +E   LV+   V+ N   +++ S  G  I+  + ++R   R+T
Sbjct: 633 SNYNG---MRAIVLDEGDE---LVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREIGRST 686

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV+     +++ VV    I + 
Sbjct: 687 RGVIGIKLNENDFVVGAVVINDD 709


>gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411]
 gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411]
          Length = 812

 Score =  687 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/891 (40%), Positives = 523/891 (58%), Gaps = 89/891 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I  V I D MQ SYL Y+++VI+GRAIPD RDGLKPVHRRIL+ M ++ +E NK Y 
Sbjct: 7   DKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDAL RM+QD+S+R  LI+GQGNFGS+DGD PAA RYTE
Sbjct: 67  KSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L DL K++VDF PNYD S +EP VL    PN+L+NG  GIAVG AT IP 
Sbjct: 127 VRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIPP 186

Query: 193 HNLGEVVDGC-VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +NL E++D C   +  + +I  D ++  I+GPDFPTG +      IK AY  G G I +R
Sbjct: 187 NNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIKSIKEAYKKGIGKITLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                EK    R+ +VV EIPYQVNKA +L+ IA+LV++K++  IADLRDES+++G R+V
Sbjct: 247 AKVKEEKIKN-RQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+     VILN+L++YT+LQ+ F VNM+AL G  P    +   +  FV  R +VV R
Sbjct: 306 IEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVKR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +LL+KA+DRAH+L GL I + N+DEVV II+ S + + AR  L +R           
Sbjct: 366 RTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKER----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ QT+AIL+++LARL  L +  + +E N +  +I+    IL
Sbjct: 415 ---------------FKLSDRQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             RS L G+IK EL+ VK      R+T+I++ ++D+  ED I  E +++T S  GYVK V
Sbjct: 460 KDRSVLKGVIKDELVYVKQTYADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKAV 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL VY  Q RGGKGR      D D++TD+F+ ++  ++L F++LG VY  K + +P  SP
Sbjct: 520 PLDVYSTQHRGGKGRMAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSP 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G+ ++NIL+L   E + TI+P  E +S      + FAT  G V+R+    F  I  +
Sbjct: 580 SAKGRPIVNILNLQPQEFVKTIVPISEADS------LFFATAAGTVKRSSFRHFENIPSN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIA++L+ +D ++SV +  + +++++TT+ G CVRF   ++R    R + GVRGI+L++
Sbjct: 634 GKIAIRLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFDSDSVRDMG-RAAAGVRGINLSE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S                                                      
Sbjct: 693 GDSVVSA-------------------------------------------------FNFN 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           + K  +  +++ +  G  K     D R  NR  KG+R   + + +   ++     + D  
Sbjct: 704 QDKHTKLIVVSQTGLG--KLLRVSDIRKVNRGAKGVRCIKLKEND---SVAGSLSLKDTG 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +I+V+  G +I++  + I + SRA +GV + +  + + VVS+      + 
Sbjct: 759 DVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSIVVAGSEDE 809



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 95/289 (32%), Gaps = 73/289 (25%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ DE+++         I+ +++  Q  R  +      + R +  +  + LA+  
Sbjct: 384 LLITLDNIDEVVA---------IIKSSQSTQEARSRLKERFKLSDRQTQAILDMKLARLV 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN------ISE 787
            +    ++   +    +   Y   +  +  L     +E+  +K   + E        I +
Sbjct: 435 ALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQTYADERKTQILDSIVD 494

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA------- 840
              +++   EQ I+T S+KG+ K      +   +R GKG  A   S  + I         
Sbjct: 495 IGIEDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGRMAATFSDNDYITDIFLTNSL 554

Query: 841 -------------------------------------------LVAVFPVNDNDQIILVS 857
                                                      +  + P+++ D +   +
Sbjct: 555 NTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNLQPQEFVKTIVPISEADSLFFAT 614

Query: 858 DKGTLIRVPV---NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             GT+ R        I      + G +     + + +VSV  + E + V
Sbjct: 615 AAGTVKRSSFRHFENIP-----SNGKIAIRLNEQDSLVSVFSVAEGDEV 658


>gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
 gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri]
 gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
          Length = 829

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/846 (40%), Positives = 514/846 (60%), Gaps = 39/846 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  + +       IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MAEQDMPN------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV
Sbjct: 55  NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K A  +L D+ K+TVDF  NYDG+ +EP VL AR+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++G   +++NPDI  + LM+ I GPDFPTG V++G++GI+ A
Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+I++R    IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ 
Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ 
Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM  
Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNN 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R+ I +E   L
Sbjct: 415 --------------------------YGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I +  DIL+ R R+  II  EL+ ++      RRT + V  + ++EDED I  ED++
Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++H GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY
Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P     A+G  +IN+L +N  E+I+ ++     E++ ++ Y+ F TK G V+R
Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +++F  I  +G  A+ L   DE++ VE  +++  +++ T  G  + F  S +R    R
Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMG-R 686

Query: 720 NSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           ++ GVRGI L   D VI  A +   +         + K   A    I G         N 
Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLNSDSKVLVISENGFGKQTPASEYPIKGRGGLGVKTVNV 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +   G +           ++ I+ V+++G   R        + RS  G+    +     +
Sbjct: 747 TVKNGPL---VGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARV 803

Query: 839 GALVAV 844
             +  V
Sbjct: 804 ATIAKV 809


>gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811]
 gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 851

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/857 (41%), Positives = 522/857 (60%), Gaps = 37/857 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A++  + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLIHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLID---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 ----------------GYLLSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT + V  + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++     E+  +  Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINVR-GEAGESKDYLFFVTRLGVVKRTAVSEFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       I++ TK G  VRF    +R+   R + GVRGI 
Sbjct: 636 RTNGLKALTLRDDDEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIMG-RAAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD VI   +V   D         Y K        I G   +     N +   G ++ 
Sbjct: 695 LRDGDLVIGSDVVSLNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKNGTLA- 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +   ++ I+  + +G   R ++     + R+  G+R   +    E GA VA    
Sbjct: 754 --GMIIVHGDEDIMVTTTQGVMIRFTTESVSQTGRATLGVRLIRL----EDGAKVATLAK 807

Query: 848 NDNDQIILVSDKGTLIR 864
            ++++ ++V  K  + R
Sbjct: 808 VEHEESLVVDAKEDVSR 824


>gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R]
 gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909]
 gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
 gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R]
 gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909]
 gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/841 (42%), Positives = 532/841 (63%), Gaps = 34/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT + +  +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+     +    N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINAR--KEDVANKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R    R + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMG-RTATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + IV   +        Y K   A      G   +     N ++  G ++   
Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ +++ G   RT+  +   + RS  G++   + +  +I  +  V    +
Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALVEQEIE 809

Query: 850 N 850
           +
Sbjct: 810 D 810


>gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
 gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
          Length = 834

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/855 (40%), Positives = 520/855 (60%), Gaps = 40/855 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  + +       IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MAEQDMPN------RITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV
Sbjct: 55  NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K A  +L D+ KDTVDF  NYDG+ +EP VL AR+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++G   ++++PDI  + LM+ I GPDFPTG V++G++GI+ A
Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+I++R    IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ 
Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ 
Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM  
Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNN 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R+ I +E   L
Sbjct: 415 --------------------------YGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I +  DIL+ R R+  II  EL+ ++      RRT + V  + ++EDED I  ED++
Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++H GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY
Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P     A+G  +IN+L +N  E+I+ ++     E++ ++ Y+ F TK G V+R
Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +++F  I  +G  A+ L   DE++ VE  +++  +++ T  G  + F  S +R    R
Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMG-R 686

Query: 720 NSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           ++ GVRGI L   D VI  A +   +         + K  SA    I G         N 
Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLNSDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNV 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++  G +           ++ I+ V+++G   R        + RS  G+    +     +
Sbjct: 747 TAKNGPL---VGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARV 803

Query: 839 GALVAV-FPVNDNDQ 852
             +  V   V++  +
Sbjct: 804 ATIAKVDKEVDEETE 818


>gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 843

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/858 (40%), Positives = 535/858 (62%), Gaps = 43/858 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  +  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A IDN +I++D LM+ I+ PDFPTG  I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G ++IE+    RE I+VTEIPYQVNKA M++K A+L+ +K++  I+ +RDESDR G R+V
Sbjct: 243 GNANIEEVQ-GRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+LY+YT+LQS FSVN +AL   KP+   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGKPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E   L   I++  DIL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  V+D+    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKDRRMSIIKEELQLVRDKYGDERRSKIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   NN YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D +L  +  T E+ ++L  K G+ +RF  +  R    R + GVRGI L
Sbjct: 636 TNGINAITIKEDDVLLEAKLTTGESQVMLALKSGKAIRFEEAKTRPMG-RGASGVRGIRL 694

Query: 730 --AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              K D+VI M  V   D++       +   +   +  S +   IT+         +I+E
Sbjct: 695 QDEKTDEVIGMIAVNDMDSN-----ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE 749

Query: 788 ERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +    + +K    E  ++ +++ G   R +  D R+  R+ +G++  ++   + I A+  
Sbjct: 750 KTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAV-- 807

Query: 844 VFPVNDNDQIILVSDKGT 861
              +++ ++++  + +G 
Sbjct: 808 AKVMHEEEEVVDETIEGV 825


>gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
          Length = 847

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/853 (41%), Positives = 532/853 (62%), Gaps = 34/853 (3%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + +E  ++    +SI  E+Q SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G
Sbjct: 1   MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + +N+ YVK ARI G+V+GKYHPHG+ A YD + RMAQ++SLR  L++GQGNFGS+DGD 
Sbjct: 61  IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ +    ++ DL KDTVDF PNYD S  EP V+ +R PN+L+NG  GIAV
Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HN+ EV+DG +A+ D+P+I +  LM +I GPDFPTGA I GR+GI+ AY TG
Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYICGRSGIREAYETG 240

Query: 245 RGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RG +V+R ++H+E +  G RE I++TEIPYQ NKA ++EKIA LV++K+I  I+++RDES
Sbjct: 241 RGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDES 300

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIELKR  +++V++NQLY+ T +Q  F + ++A+   KP    L  IL+ F+ 
Sbjct: 301 DRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNKPMILNLKQILEHFLV 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R+ VV RRT + L KA ++AH+L GL +A+ NLDEVV +I+ + NP  A+  L++R   
Sbjct: 361 HRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVER--- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS +Q + IL++RL RLTGL R  I ++  ++  E
Sbjct: 418 -----------------------FELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQE 454

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I     IL+  + +LGIIK E L +++     RRT I++ + D+  ED I  EDM VTV+
Sbjct: 455 ITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMAVTVT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H G++KR P ++YR+Q RGGKG SG    +EDF++DL++ ST  + LFF++ G V+  KV
Sbjct: 515 HSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKV 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+    ARGKA++N+L L++ E++  I+P    E    +  ++  TK G +++  L 
Sbjct: 575 YQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQ 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +  R GK A+ ++  DEI+       ++ +LL T  G+ + F  S +R    R + G
Sbjct: 635 EFRRPLRKGKRALTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMG-RTAAG 693

Query: 724 VRGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           VRGI+L + D+V+S  +    D+        Y K    +   I     +       S   
Sbjct: 694 VRGITLGEDDEVVSAIVASSNDSILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERN 753

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL- 841
           G++      +    E+ I+ +++ G   R +  + RI  RS +G+R  ++    ++ ++ 
Sbjct: 754 GDL---ISAKQVSDEEEIMIIADSGKMIRMNLENVRIIGRSTQGVRLINLEGDEKVVSMD 810

Query: 842 -VAVFPVNDNDQI 853
            VA    + +D++
Sbjct: 811 TVARDESDLDDEV 823



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 61/144 (42%), Gaps = 6/144 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  E    +  + +   + +   ++L   E   +TV+  GF KR  +  +R  +R GKG+
Sbjct: 478 EIRETYGDERRTVIIDAVDDLLPEDLIAPEDMAVTVTHSGFIKRNPAALYRSQHRGGKGV 537

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
                 + + I  L     +   D  +  ++ G +    V ++ +  R  +G   V +  
Sbjct: 538 SGAKNIEEDFISDLYVASTL---DTFLFFTNYGKVFWRKVYQLPLVGRTARGKAIVNLLE 594

Query: 885 TAKDERVVSVERIRESEIVDEAES 908
             + E++ ++  +   E  D++++
Sbjct: 595 LDESEKLAAILPVTSFEDEDKSKT 618


>gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH]
          Length = 839

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/902 (36%), Positives = 521/902 (57%), Gaps = 88/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++
Sbjct: 14  ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R
Sbjct: 74  PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ KDTVDF  NYDG  QEP VL A +PN+L NG  GIAVGM+T+
Sbjct: 134 YTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTS 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP+HNL E++ G + +IDNPD  ++ L+ +I+GPDFPTGA I+   GI++ + TG+G++V
Sbjct: 194 IPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVV 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+    R  +VVTEIPY VNK +++EKI ELV+ + I  IAD+RDES R+G R
Sbjct: 254 IRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P+   +   L  ++  + +V+
Sbjct: 313 LVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+T++ L K ++R H+L GL IA  N+DEV+ II+ S N + A   L +R         
Sbjct: 373 IRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L E+Q RA+L++RL  L+ L  + ++ E   L   I+ C  
Sbjct: 424 -----------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQ 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+ +   L +IK++L  + ++   PRR+ I+ G   D++DED I +E++V+T+S  GY+
Sbjct: 467 VLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYL 526

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P 
Sbjct: 527 KRIGVDSYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPP 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G    +G   +N++ +++ E+I  ++   + +    N Y  F TK+G ++R  LS+F  I
Sbjct: 587 GFRTNKGIPAVNLIKIDKDEKICALISVNDYQ----NGYFFFCTKNGTIKRTSLSEFANI 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              GK A+     D + SV   + ++DI + +  G  VRF    +R  + R ++GV GI+
Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGIN 701

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +G+ V  ++                                                 
Sbjct: 702 LNQGEFVNGLS------------------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+V + G GK TS   +R++ R+ KG++   V+   + G +V    V 
Sbjct: 713 ----TSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTVF 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            N+ ++++S  G ++R+ + ++    + T GV +    + ER+ +V   ++ E +    +
Sbjct: 767 GNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTA 826

Query: 909 TE 910
           TE
Sbjct: 827 TE 828


>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
 gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
          Length = 929

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/833 (42%), Positives = 518/833 (62%), Gaps = 35/833 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    + DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK + K A
Sbjct: 81  LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL
Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A  +L DL K+TVD +PNYD +  EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV +    +IDNPD+  + LME++ GPDFPTG +I+G  GIK+AY TGRGSI +R   H
Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 320

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E T   R+++VVTEIPYQVNK  + EKIA+ V EK+I  I+D+RDES+R+G R+VI+LK
Sbjct: 321 VESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 380

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG    V+LN LY+ T LQS F +  +AL    P   +L  IL+ ++  + +VV RRT++
Sbjct: 381 RGEVPQVVLNNLYKRTQLQSNFGIIDLALVDGVPRTLSLREILRCYIDHQIDVVRRRTEF 440

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  R H+L GL  AV N+DE+V IIR S +   A+R + +R               
Sbjct: 441 DLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHER--------------- 485

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L ++Q  AIL++RL RLTGL R D+ +E++ L  +I    D+L+  +
Sbjct: 486 -----------FDLDDIQGEAILQMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHEN 534

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L +I  EL  + +     RRT+I +  + +++ ED I  EDMVVTV+H GYVKRVP+ 
Sbjct: 535 KILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 594

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q+RGGKG  GV +++ DFV +LF+ STH  VLFF++ G VY+ KV  LP+G+   +
Sbjct: 595 IYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTK 654

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+LSL++GE+I  ++   +  +     Y++FATK G V++  +S++ +  + G I
Sbjct: 655 GNAIVNVLSLSEGEKIAAVITTRDFPAE---NYLMFATKQGMVKKTAMSEYDRTRKDGII 711

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++V      + ++L +  G+ + F  S  R    R + GVRGI L     
Sbjct: 712 AINLKQGDELVNVRRVHPGDKVILCSSDGKAILFDESQARAMG-RGTSGVRGIMLKGEAT 770

Query: 735 VISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++ M I   + D        Y K  +           +       ++ +G +   R   +
Sbjct: 771 MLGMEITNGNGDLFVITEKGYGKRTAVSEYPEHKRGGQGVFTITMTAKKGKLVACR---V 827

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
              +  I+ +SE+G   R  + D     RS +G++  ++   + + A+  +  
Sbjct: 828 VGPQHEIMIMSEEGVVIRVKAVDISKLGRSTQGVKVMNIGADDHVSAIARMIV 880


>gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 779

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/858 (40%), Positives = 512/858 (59%), Gaps = 85/858 (9%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G
Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMG 180

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           ++GI  AY TG+GSIV+R  + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI
Sbjct: 181 KSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRI 240

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I  +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +
Sbjct: 241 EGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILS 300

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A
Sbjct: 301 LRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEA 360

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + ELM +                            LSE Q++AIL++RL RLTGL RD I
Sbjct: 361 QAELMSK--------------------------FKLSERQSQAILDMRLRRLTGLERDKI 394

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDC 532
           ++E + L   I +  DIL+   R+  IIK EL  VK +    RRT + V  +L +EDED 
Sbjct: 395 QSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDL 454

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   D+++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF
Sbjct: 455 IEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFF 514

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P     A+G  ++N+L L++ E I T++    D S  ++ Y+ F T
Sbjct: 515 TNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTT 572

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           +HG V+R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G  VRF  SA
Sbjct: 573 RHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 632

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R  + R + GV+G++L +GD V+  +++   D                           
Sbjct: 633 VRGMS-RIATGVKGVNLREGDTVVGASLITDQD--------------------------- 664

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   E  I+T    G  KRT + ++    R GKG++   +
Sbjct: 665 ------------------------EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKI 698

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ++ N  G L  +  V  ++ +++++D G +IR  +  I    RAT GV +    +D ++V
Sbjct: 699 TEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 756

Query: 893 SVERIRESEIVDEAESTE 910
           +   +  +E  +     E
Sbjct: 757 TFTTVAVAEKEEVGTENE 774


>gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
 gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 854

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/920 (38%), Positives = 500/920 (54%), Gaps = 101/920 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E     I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDET---GEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KCAR+ GEVMG+YHPHG++AIYDAL R+ QDW++R  L  GQGNFGS 
Sbjct: 58  YDGGYRPDRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE ++   A  ++ D+ K TVDF+ NYDG  QEPV+L AR+PN+LVNG  
Sbjct: 118 GNDGAAAPRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    + NP    + L+E     I+GPDFPTGA ILG  G
Sbjct: 178 GIAVGMATNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQILGHKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E+    R  +VVTE+PYQ N   +  KIAELV++ +I  I
Sbjct: 238 IEDAYRTGRGSITMRAVVNVEEIQN-RTCLVVTELPYQANPDNLAVKIAELVKDGKIGGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           ADLRDE+  R G R+V+ LKR A A V+LN LY++TSLQ  FS NM+A+    P   +L 
Sbjct: 297 ADLRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVDGVPRTLSLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +VA + EV+VRRT++LLN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 357 AFIRHWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + ++Q  AIL+++L RL  L R  I++
Sbjct: 417 GLID--------------------------LLGIDDLQVNAILDMQLRRLAALERQKIQD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534
           E   L +EI E   IL+S  R   I+ +EL  + ++    RRT+I+ G   DM  ED I 
Sbjct: 451 ENAKLELEIAEYNSILASEDRQRTIVSEELAEIVNKFGDERRTQIMLGYDGDMSMEDLIP 510

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+MVVT++  GYVKR     YR+Q RGGKG  G  +R +D V   F+ +TH  +LFF++
Sbjct: 511 EEEMVVTITRGGYVKRTRSDNYRSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTN 570

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG VY+ K + L      A+G+ + N+            + F  DE              
Sbjct: 571 LGRVYRAKAYELVEAGRDAKGQHVANL------------LAFQPDE-------------- 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
                             KIA  LD +D         Q   ++L TK G   +  +    
Sbjct: 605 ------------------KIAQVLDLKDY-------QQSPYLVLATKNGLVKKTRLEDYD 639

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                 S GV  I+L   D+++S  +V  +D      +  +       R  + D      
Sbjct: 640 T---NRSAGVIAINLRDEDELVSAQLVSESDD-----MLLVSRKGQSIRFTATDEALRPM 691

Query: 775 LKNDSSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +  S V G       E     +  ++ ++  V+E G+ KRT+  ++R   R G GI+  
Sbjct: 692 GRATSGVTGMKFRQDDELLAANVVTEDSYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVA 751

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            + +  + G LV    V D+D++++V + G ++R  V E+    R T GV+     K++R
Sbjct: 752 KLVE--DRGDLVGALIVQDDDEVLVVMEGGKVVRSNVAEVPAKGRDTMGVIFAKPDKNDR 809

Query: 891 VVSVERIRESEIVDEAESTE 910
           ++ V R RE  +  E    E
Sbjct: 810 IIEVARNRERGLESEETEDE 829



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 13/259 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D     +   +V  +  G VK+  L  Y   R    G   + +RDED +    
Sbjct: 604 EKIAQVLDLKDYQQSPYLVLATKNGLVKKTRLEDYDTNRSA--GVIAINLRDEDELVSAQ 661

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    +L  S  G   +       +  P  R  + +  +   Q + +       ED  
Sbjct: 662 LVSESDDMLLVSRKGQSIRFTATDEAL-RPMGRATSGVTGMKFRQDDELLAANVVTED-- 718

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                YV   T+ G  +R  + ++    R G   K+A  ++ R +++       ++++L+
Sbjct: 719 ----SYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKLVEDRGDLVGALIVQDDDEVLV 774

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             + G+ VR  ++ +     R+++GV      K D++I +A       + +E    +   
Sbjct: 775 VMEGGKVVRSNVAEVPAKG-RDTMGVIFAKPDKNDRIIEVARNRERGLESEETEDEVPLT 833

Query: 759 SAQRRLISGDTEEITSLKN 777
             Q      +T    +   
Sbjct: 834 EGQTAEGQTETGTEEAPIE 852


>gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
 gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
          Length = 826

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/895 (40%), Positives = 549/895 (61%), Gaps = 95/895 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKN-KEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + R T I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRCTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKD---FSDERSLAFFTKKGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F   N +G  A+ LD  DE++S +   +    +L+ + LG  ++F +  +R    R
Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREIG-R 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI L + D V+  A+V+  D++                                
Sbjct: 685 TTRGVRGIRLNENDFVVG-AVVISDDSNK------------------------------- 712

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKGI    +++  + G
Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 750

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
            LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIQDIKETIGRNTSGVKLIDTA--DKVV 803



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 14/255 (5%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DEI+ +   +Q  +     K     RF +S I
Sbjct: 365 IRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPE---AAKDALMERFTLSEI 421

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  A       R   L +         +L   +D +  +     ++   +    + +E  
Sbjct: 422 QSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQF 481

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S +  + ++        ++L   E  ++++S KG+ KR     +   NR GKG  + +  
Sbjct: 482 SSQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTY 541

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I      F  N +D ++ +++KG L R+ V +I  ASR   G   V + S A DE+
Sbjct: 542 EDDFIEN---FFVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLAPDEK 598

Query: 891 VVSVERIRESEIVDE 905
           +  +  +   +  DE
Sbjct: 599 I--MATLSTKDFSDE 611



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/263 (20%), Positives = 96/263 (36%), Gaps = 63/263 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           N   VV  +  G V+R  L  + + NR   GK++      D I +       + +L  T 
Sbjct: 504 NEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITN 563

Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            GQ  R  +  I   A R ++G   V  ISLA  +++  MA +   D   +  + +    
Sbjct: 564 KGQLYRLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKDFSDERSLAF---- 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                        ++KG  KRT+  +F 
Sbjct: 617 --------------------------------------------FTKKGVVKRTNLSEFD 632

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRAT 877
            +      +RA  + + +E   LV+   V+ N   +++ S  G  I+  + ++R   R T
Sbjct: 633 SNYNG---MRAIVLDEGDE---LVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREIGRTT 686

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV      +++ VV    I + 
Sbjct: 687 RGVRGIRLNENDFVVGAVVISDD 709


>gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
 gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
          Length = 826

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/849 (40%), Positives = 515/849 (60%), Gaps = 35/849 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT++ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DILS   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILSKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRAAKGLPVVNLLQLEKGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L + D V+   I+   D         Y K   A    + G   +     N +   G
Sbjct: 691 RGINLREHDYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNG 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            ++      +      ++ ++  G   R    D   + RS  G+R   VS  +++ +L  
Sbjct: 751 PLAGVT---IINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTV 807

Query: 844 VFPVNDNDQ 852
           V    + DQ
Sbjct: 808 VPTEEEQDQ 816


>gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45]
 gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45]
          Length = 919

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/907 (38%), Positives = 536/907 (59%), Gaps = 92/907 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+G GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  +ADLRDES+R G R
Sbjct: 309 VRSIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ LNKA+DR H+L GL +AV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSAR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+  + 
Sbjct: 480 -----------------FNLSEKQTKAIVDMRLGRLTGLAIDSMIEEMKNLSAEIERIIS 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           ILS +  L  +I  EL  +K++    RRT I + L   ++DED I + D+V+T S  GYV
Sbjct: 523 ILSDKKLLTELIIDELTEIKNKFADDRRTVIDKNLSASIDDEDLITKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D +  +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINILS---LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            + Q++G + INI+    +++GE++ +++   E     +N Y+  ATK G +++  LS+F
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEY---SDNKYLFTATKLGIIKKTSLSEF 699

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN +GK A  L   DE++       +  +LL     + V+F  +  R  + R + GV+
Sbjct: 700 QIININGKRAFNLKENDELIRASIINDDELVLLANDKQRIVKFHSNEFRALS-RIATGVK 758

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA  +  IS +     +                                        
Sbjct: 759 GITLADDETCISASSSSEGE---------------------------------------- 778

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT+   GFGK T    FR+ +R GKG+   +    ++ G LV   
Sbjct: 779 -------------LILTIGRNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFAR 822

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE--RIRESEIV 903
            VN +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE  ++     +
Sbjct: 823 FVNPHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLKKKEQIQAVEIVKLENDSSI 882

Query: 904 DEAESTE 910
           DE    E
Sbjct: 883 DETVDDE 889



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 15/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ M   D       + T + LG +K+  LS +  Q     G+    +++ D +    
Sbjct: 665 EKVISMLAVDEYSDNKYLFTATKLGIIKKTSLSEF--QIININGKRAFNLKENDELIRAS 722

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I++    VL  +    + K         S  A G   +  ++L   E   +        S
Sbjct: 723 IINDDELVLLANDKQRIVKFHSNEFRALSRIATG---VKGITLADDETCISA------SS 773

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLT 699
           S     ++   ++G  +    S F  ++R GK  I +  D    ++        ++IL+ 
Sbjct: 774 SSEGELILTIGRNGFGKITHHSLFRLVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMI 833

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHM 758
           T  G  +R PI  I    GR + GV+ I+L K +Q+ ++ IV L  D+  DE +   K +
Sbjct: 834 TTSGFTIRIPIKDINQ-TGRATKGVKLINLKKKEQIQAVEIVKLENDSSIDETVDDEKFI 892

Query: 759 SAQRRLISGDTEEITSLKNDSSV 781
              +        +   +  ++S 
Sbjct: 893 DDIKNQTKEILLDKGDINEETSE 915


>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 855

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/845 (39%), Positives = 505/845 (59%), Gaps = 40/845 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ WS R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG  GIAVGMATNIP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL E++   V +IDN      D  ++ LMEI++GPDFPTGA ILG+ GI+ AY TGRG I
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRTGRGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V+ IE     + +I+VTEIPY VNKA ++EKIAELV++KR+  I DLRDES+R+G 
Sbjct: 247 RVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  +A+++LNQL ++T LQ  F VNM+AL   +P+   L  +L  ++  +++V
Sbjct: 307 RICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLDHQKDV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA +RAH+L GL  A+  +DEV+RIIR S     A+  LM+R        
Sbjct: 367 VTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q +AI+++RL  LTGL R+ + NE   L   I E  
Sbjct: 419 ------------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELR 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+  ++LL +IK+E+  + D+    RRT+I     DM  ED I  ED+VV +++LGY+
Sbjct: 461 GILADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAITNLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +++Q RGGKG  G+   DED++ +L + +TH  ++FF++ G VY+ K + +P 
Sbjct: 521 KRMSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A++N++ L  GE+IT  +P  E +    + ++  ATK+G V+R  + ++  +
Sbjct: 581 AGRTARGTAIVNLIQLQPGEKITATVPMKEFDE---DKFLFMATKNGMVKRTPMKEYENV 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DI L TK G C+RF  + +R+  GR S+GV G+ 
Sbjct: 638 RKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRI-TGRVSMGVIGMK 696

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               D++I M +    +           K    +         +       +   G +  
Sbjct: 697 FDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTGYL-- 754

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +L  + + I+ ++ +G   +       I  R+  G++  D+   + +  + ++  V
Sbjct: 755 -VGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVV-VASIAKV 812

Query: 848 NDNDQ 852
            ++ Q
Sbjct: 813 RESSQ 817


>gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000]
 gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000]
          Length = 832

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/890 (37%), Positives = 495/890 (55%), Gaps = 88/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGSVD DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+P H
Sbjct: 145 RMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  I+GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312
             IE+T  DRE IVV E+PY V K  + EKIAELV++ +I  +AD+RDE S+R G R++I
Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L+  F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLWKHTDLEITFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N E AR  LM +            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSK------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL ++ ++    RR+ I+      ++++ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKNIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  +
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     +         ++  TK G +++ +L       +
Sbjct: 599 KTSQGKSIKFILNLAPDEKITSYFTVSDFN---PKQSIIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE++ V      +D ++TT  G  +R     +R    R + GV+GI+L 
Sbjct: 656 RGILALTLENNDELIGVSAVESGDDFIMTTASGLALRINEQKVRNMG-RAAAGVKGITLD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D  +S   +   ++                                            
Sbjct: 715 DNDICVSGNGIHKGES-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ ++E G GKR SS  F    R GKG         N+ G +V+V  V D 
Sbjct: 731 ---------LIVITENGIGKRLSSKQFNAKGRGGKGQIYIK--PDNKTGNVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++V+     I++  + I    R  KGV I + +   +V  +  +   
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGAKVSDLAVVPAD 829


>gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
 gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
          Length = 871

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/852 (40%), Positives = 494/852 (57%), Gaps = 47/852 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 22  NIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDRAYSKC 81

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+ AIYD L R+ QDW+LR  L  GQGNFGS   DP AA RYTE R
Sbjct: 82  SRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGSPGNDPAAAPRYTETR 141

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  ++ D+ K+TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 142 MAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGSAGIAVGMATNIPPHN 201

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +G    + NPD   + L E     I+GPDFPTGA ILGR+GI +AY TGRGSI +
Sbjct: 202 LREVAEGVAWYLANPDASREELREALIARIKGPDFPTGATILGRSGIDDAYRTGRGSITM 261

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V ++E+    R+ +VVTE+PYQVN   +  KIA+L +E RI  IAD+RDE+  R G R
Sbjct: 262 RAVVNVEEIQ-GRQCLVVTELPYQVNPDNLALKIADLTKEGRIQGIADIRDETSGRTGQR 320

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A A V+LN LY++T LQ  FS NM+AL    P   ++   +  +V  + +V+
Sbjct: 321 LVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSIDAFIHHWVNHQLDVI 380

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +LL +A D+ H+L G   A+ NLDEV+ +IR SP  E AR  L++          
Sbjct: 381 SRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVEEARGGLIE---------- 430

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + ++Q  AIL L+L RL  L R  I +E + L  +I +  D
Sbjct: 431 ----------------LLGIDDIQATAILNLQLRRLAALERQKIIDEHDDLERQILDYRD 474

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  + D     RR+ I+    ++  ED I  ED+VVT++  GYVK
Sbjct: 475 ILASPQRQRDIVGSELSEIVDRYGDERRSTILPYGGEVSMEDLIAEEDVVVTITRGGYVK 534

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ+RGGKG  G  +R++D V   F+ +TH  +LFF++LG VY+ K + LP G
Sbjct: 535 RTRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEG 594

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S +++G+ + N+L+   GE I  ++     E   ++ Y+V AT+ G V++ +LS++    
Sbjct: 595 SRESKGQHVANLLAFQPGESIAQVLALRNYE---DHEYLVLATRSGLVKKTRLSEYDTNR 651

Query: 670 RSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            +G IA+KL        DE++       +ND++L ++LGQ +RF      +   GR + G
Sbjct: 652 SAGLIAIKLREYDDGSVDELVKAMPVNADNDLILISRLGQSIRFTADDASLRPMGRGTSG 711

Query: 724 VRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           V G+  A GD+++S  +V   AD        + K  +     + G   +   +       
Sbjct: 712 VIGMKFADGDELLSADVVKDDADLFVVTDGGFAKRTAISEYRVQGRGGQGVKVAKLVEDR 771

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G++      E   ++  +L + EKG   R++  +   + R+ +G+      K + I A+ 
Sbjct: 772 GHLVGALITE---QDDEVLVIMEKGKIVRSAVAEVNRTGRNTQGVTFAKPDKKDRIIAVA 828

Query: 843 --AVFPVNDNDQ 852
                 +ND D 
Sbjct: 829 RNVERSLNDEDD 840


>gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon]
          Length = 843

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/920 (38%), Positives = 550/920 (59%), Gaps = 100/920 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E     + E  + +  VS+ DEM +SY+ YA++VI+GRA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MSED--QREAEVRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  N+ + K ARI G+V+GKYHPHG+ A+YD + RMAQD+S R  L++GQGNFGSV
Sbjct: 59  HELGVTHNRPHKKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  LL DL KDTV++ PN+D S +EP +L A+ PN+L+NG  
Sbjct: 119 DGDAAAAMRYTEARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVVDG + VI+ P++ ++ LM+II+ PDFPTG +I+G  GIK A
Sbjct: 179 GIAVGMATNMPPHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI IR  + IE   G +E+IV+ EIPYQVNK+ ++E+IAE  ++ ++  I+ LR
Sbjct: 239 YETGRGSIRIRAKAEIE-VKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELK GA++ +ILN+LY++T L++ F V  +AL   +P   TL  +++ 
Sbjct: 298 DESDRKGMRIVIELKAGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIEC 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R+EV +RR +Y L +A  R H+L GL IA++N+DEV+R+I+ + + +TA+  L+ R
Sbjct: 358 YIKHRKEVTIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q + IL++RL+RL+ L RD I  E   L
Sbjct: 418 --------------------------FELSEEQAKEILDMRLSRLSALERDKIETERAEL 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I    ++L S +R+  ++K++L+  KD+    RRT I E ++ + + D +  +++++
Sbjct: 452 ETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNI-EEMVTLSERDFVEEKEVIL 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   YVKR+P  +++ Q RGGKG + +  +++D + +    ST   ++FF+  G  Y+
Sbjct: 511 YLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQ 570

Query: 601 EKVWRLPIGSPQARGKALINI----LSLNQGERITTIMPFPED-----ESSWNNLYVVFA 651
            K + +P  S  ++GK L+NI    +S  + E+  T +  PE+     E++    Y+VFA
Sbjct: 571 VKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----------QENDILLTTK 701
           TK G V+R+ L+    I  +G +A++    D +  V               +N I+L++K
Sbjct: 631 TKRGVVKRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSK 690

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ + F    +R    R + GVRG+ L K D++ S+                       
Sbjct: 691 NGKAIFFHEEELREMG-RYAAGVRGMRLEKDDEIASV----------------------- 726

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                             +++  +S+E+ + +        T++EKG+GKRT    +R ++
Sbjct: 727 -----------------EALDVGVSKEKSRAV--------TITEKGYGKRTKLDAYRETH 761

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R GKG+ +    + N  G +V +  V + D++++ +  G + ++ V  I +  R T+GV 
Sbjct: 762 RGGKGVISIKTGERN--GKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVR 819

Query: 882 IFSTAKDERVVSVERIRESE 901
           I +  K ERVV+V+ +  +E
Sbjct: 820 IMNVKKGERVVAVDILSATE 839



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 20/228 (8%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST--------- 585
               +V  +  G VKR  L+  +A R    G   V     D + D+ ++           
Sbjct: 623 EGAYLVFATKRGVVKRSSLAKLKAIRST--GVVAVRTTKGDSLADVVLIKPSLDSQDRGA 680

Query: 586 -HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               ++  S  G         L      A G   +  + L + + I ++       S   
Sbjct: 681 GQNGIILSSKNGKAIFFHEEELREMGRYAAG---VRGMRLEKDDEIASVEALDVGVSKEK 737

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTK 701
           +  V   T+ G  +R KL  + + +R GK  + + + +   +++ ++     +++++ T 
Sbjct: 738 SRAVTI-TEKGYGKRTKLDAYRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVATS 796

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            G   +  +       GRN+ GVR +++ KG++V+++ I+   ++   
Sbjct: 797 DGMVTKISVR-SISVQGRNTQGVRIMNVKKGERVVAVDILSATESTGK 843


>gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1]
          Length = 902

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 480/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +ARG  +  +LS    E+I  +M     + +    Y++ AT+ G V++  L  +    
Sbjct: 599 GREARGGHVAGLLSFLPDEKIAQVMTLRSYDGAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V      G  V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGGDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
          Length = 855

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/845 (39%), Positives = 505/845 (59%), Gaps = 40/845 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + K
Sbjct: 7   DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY AL  MAQ WS R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 67  CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG  GIAVGMATNIP H
Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186

Query: 194 NLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NL E++   V +IDN      D  ++ LMEI++GPDFPTGA ILG+ GI+ AY TG+G I
Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRTGKGKI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R V+ IE     + +I+VTEIPY VNKA ++EKIAELV++KR+  I DLRDES+R+G 
Sbjct: 247 RVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREGM 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IEL+R  +A+++LNQL ++T LQ  F VNM+AL   +P+   L  +L  ++  +++V
Sbjct: 307 RICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLDHQKDV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA +RAH+L GL  A+  +DEV+RIIR S     A+  LM+R        
Sbjct: 367 VTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q +AI+++RL  LTGL R+ + NE   L   I E  
Sbjct: 419 ------------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELR 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+  ++LL +IK+E+  + D+    RRT+I     DM  ED I  ED+VV +++LGY+
Sbjct: 461 GILADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAITNLGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +++Q RGGKG  G+   DED++ +L + +TH  ++FF++ G VY+ K + +P 
Sbjct: 521 KRMSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG A++N++ L  GE+IT  +P  E +    + ++  ATK+G V+R  + ++  +
Sbjct: 581 AGRTARGTAIVNLIQLQPGEKITATVPMKEFDE---DKFLFMATKNGMVKRTPMKEYENV 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ L   DE++ V+      DI L TK G C+RF  + +R+  GR S+GV G+ 
Sbjct: 638 RKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRI-TGRVSMGVIGMK 696

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
               D++I M +    +           K    +         +       +   G +  
Sbjct: 697 FDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITEKTGYL-- 754

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +L  + + I+ ++ +G   +       I  R+  G++  D+   + +  + ++  V
Sbjct: 755 -VGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVV-VASIAKV 812

Query: 848 NDNDQ 852
            ++ Q
Sbjct: 813 RESSQ 817


>gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 840

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/844 (41%), Positives = 515/844 (61%), Gaps = 33/844 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDARIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NP      LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL+A++  + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKAILEAYLTHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLID---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 ----------------GYALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ + R+  +I  ELL ++ +    RRT + V  +  +EDED I  ED+++T++  GY+
Sbjct: 457 ILAHQERVDQLIYDELLEIQTKFGDERRTELQVGDVTTLEDEDLIEEEDVIITLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++     E++ ++ Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLHFEGDEKIQTVINVR-GEATDSHDYLFFVTRLGVVKRTAVSEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       +L+ TK G  VRF  + +R+   R + GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQSVLIATKDGYSVRFVEADVRIMG-RAAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L + D VI   +V   +         Y K   A    I G   +     N +   G ++ 
Sbjct: 695 LRENDLVIGADVVDDTENVLVITEKGYGKQTPATEYPIKGRGGKGIKTANITDKNGVLA- 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +   ++ I+  + +G   R +      + R+  G+R   +    ++  L  V   
Sbjct: 754 --GMTIVRGDEDIMVTTTQGVMIRFAVASVSQTGRATLGVRLIRLEDGAKVATLAKVEHE 811

Query: 848 NDND 851
              D
Sbjct: 812 TTED 815


>gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1]
 gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1]
 gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3]
 gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1]
 gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3]
 gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2]
 gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1]
          Length = 891

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 479/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M     + +    Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V      G  V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGGDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
          Length = 870

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/909 (38%), Positives = 539/909 (59%), Gaps = 92/909 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E I+   E   + +  + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +
Sbjct: 29  EEIMKKTEMSNEEL--IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDE 86

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  N  Y K AR+ GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS+DG
Sbjct: 87  LKMNHNSPYKKSARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDG 146

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K A  +L D+ KDT+D+R N+D S  EP VL AR PN+L+NG  GI
Sbjct: 147 DSAAAMRYTEARMSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGI 206

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGE+ DG +A+IDN DI +D L+  I+GPDFPTG +I G++GI +AY 
Sbjct: 207 AVGMATNIPPHNLGELSDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYK 266

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +   + I      R+ IV+TE+PYQVNKA ++++I ELV++K IV I+DL D 
Sbjct: 267 TGRGKVRVSAKTEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADL 326

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+ +G R+VI++K+G  A+++LN+L ++T LQ+ F + M+AL    P+   L  IL+ ++
Sbjct: 327 SNLEGIRIVIDIKKGEEAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYL 386

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+ R+T + LNKA+DRAH+L GL  A+ ++DE++ IIR S     A+  L+ +  
Sbjct: 387 EHRYDVITRKTIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK-- 444

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                      +E+QT AIL++RL RLTGL R++I  E + L +
Sbjct: 445 ------------------------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLML 480

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   IIK+E+L +K +    RRT I     ++  ED I  ED++VT+
Sbjct: 481 FITDLEDILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTI 540

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR+ L  Y+AQ+RGGKG S     ++D + DLF   T  +++ FS  G VY  K
Sbjct: 541 TKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIK 600

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P  S QARGK + NI+ L++ E+I+ I+P   DE   +N  ++F T++G  ++ K+
Sbjct: 601 VYEIPEVSKQARGKLIGNIIELDENEKISVIIPV--DEIENDNRDLIFITRNGIAKKTKI 658

Query: 663 SDFIQINRSGKIAMKL-DSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGR 719
           S+F  INR+GKIA+   D  DE+  V   +    ++I ++TK G  VRF    IR    R
Sbjct: 659 SEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSMG-R 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVR I L   D+V+S  ++                                      
Sbjct: 718 TAAGVRAIKLNSNDEVVSADVI-------------------------------------- 739

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV----SKI 835
                       +  + E  +L+V+  G GK+T   ++ I  R GKG++  ++     + 
Sbjct: 740 ----------YTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEE 789

Query: 836 NEIGALVAVFPVNDND------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +E   +V    ++ +D      +++ +S  GT+IR+ + ++ +  R +KGV I S    E
Sbjct: 790 SEHHYVVYSTIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKE 849

Query: 890 RVVSVERIR 898
            +VS +R+ 
Sbjct: 850 YLVSADRVA 858



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 7/221 (3%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ I+  TK G   R  + + +    R   GV   +  + D +  +      D   
Sbjct: 530 LIKNEDVIVTITKRGYAKRMSLDSYKA-QKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLM 588

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++  +K             + I ++      E         E++   + ++ ++
Sbjct: 589 VFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFIT 648

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  K+T   +F+  NR+GK   A       +    V +   ++ D+I + +  G  +R
Sbjct: 649 RNGIAKKTKISEFKTINRNGK--IAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVR 706

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
               +IR   R   GV       ++ VVS + I     VDE
Sbjct: 707 FKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDE 747


>gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1]
 gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1]
 gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1]
 gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1]
 gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1]
 gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1]
 gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1]
 gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1]
 gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
 gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2]
 gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1]
 gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 891

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/850 (38%), Positives = 479/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M      S  +  Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLR---SYDDAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V      G  V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGGDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1]
 gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2]
 gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2]
 gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1]
 gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1]
 gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2]
 gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1]
 gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2]
 gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1]
 gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2]
 gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4]
 gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3]
 gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1]
 gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1]
 gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1]
 gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2]
 gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1]
 gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2]
 gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2]
 gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3]
 gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2]
 gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1]
 gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2]
 gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3]
 gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1]
 gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2]
 gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2]
 gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2]
 gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1]
 gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1]
 gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2]
          Length = 891

 Score =  682 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 479/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M     + +    Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V      G  V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGGDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
 gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
          Length = 883

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/935 (37%), Positives = 510/935 (54%), Gaps = 113/935 (12%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+ +       E             I SV +  EMQ SYL YA++VI+GRA+P++RDGL
Sbjct: 1   MTDDLTPEPSTPEILGENGLAIEHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M   G   ++ + KC+R+ G+VMGK+HPHG+ AIYDAL R+ QDWSLR  
Sbjct: 61  KPVHRRVLYAMYDGGYRPDRAFSKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L+ GQGNFGS   DP AA RYTECR+   A  ++ D+ KDTVDF+ NYDG  QEP +L +
Sbjct: 121 LVAGQGNFGSPGNDPAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDF 225
           R+PN+LVNG  GIAVGMATNIP HNL EV +G    +D+PD   +     L+ II+GPDF
Sbjct: 181 RFPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PTGA ILG  GI++AY TGRGSI +R + ++E+    R  +VVTE+PYQVN   +  KIA
Sbjct: 241 PTGATILGHRGIEDAYRTGRGSITMRAIVNVEEIQN-RICLVVTELPYQVNPDTLALKIA 299

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           ELV++ R+  IAD+RDE+  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 300 ELVKDGRVQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLAL 359

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P   ++   ++ +VA + EV+VRRT +LL +A  + H+  G   A+  LD+V+ +I
Sbjct: 360 VDGVPRTLSIDAFIRHWVAHQLEVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALI 419

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP+ + AR+ L++                           + + E+Q  AIL ++L R
Sbjct: 420 RRSPDADRARQGLIEM--------------------------LDIDEIQATAILNMQLRR 453

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R +I +E + L  EI E  DIL+  SR   I+  EL  +  +    RRT ++   
Sbjct: 454 LAALQRQEIIDEHDKLEKEILEYQDILAKESRQRQIVSDELNELVAKYGDERRTTVLPHA 513

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I  E+MVVT++  GY KR     YRAQ+RGGKG  G  +R++D V   F+ +
Sbjct: 514 GEVSMEDLIAEEEMVVTITRGGYAKRTRSDNYRAQKRGGKGVRGAQLREDDIVDHFFVTT 573

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++LG VY+ K + LP G   A+G+             +  ++ F   E    
Sbjct: 574 THHWLLFFTNLGRVYRAKAYELPEGGRDAKGQH------------VANLLAFQPGE---- 617

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
                                       KIA  LD RD  ++       + ++L T+ G 
Sbjct: 618 ----------------------------KIAQVLDLRDYDVA-------DYLVLATRRGT 642

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKG-----DQVISMAIVLHADADYDERICYMKHMS 759
             +  +S         S GV  I+L +      D+++S  +V   D      +  +    
Sbjct: 643 VKKTRLSEYD---SNRSGGVIAINLREDADGQPDELVSARLVDATDD-----LILVSRKG 694

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSY 815
              R  + D       +  S V G    E  + L +        +  V+E GF KRTS  
Sbjct: 695 QSIRFTASDEAMRPLGRATSGVTGMKFREDDELLAMDVVRDGAHLFVVTEGGFAKRTSVD 754

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++R+  R G GI+  ++ +    G LV     +++D+++++ ++G ++R  VN++ +  R
Sbjct: 755 EYRVQGRGGLGIKVANLVEA--RGDLVGALVTDEDDEVLVIMERGKIVRSAVNQVHLTGR 812

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            T+GV      K++R+++V R  E  + D+ +S E
Sbjct: 813 TTQGVTFAKPDKNDRIIAVARNVERNLGDDIDSEE 847



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 106/277 (38%), Gaps = 18/277 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  + D       D +V  +  G VK+  LS Y + R G  G   + +R++     D 
Sbjct: 617 EKIAQVLDLRDYDVADYLVLATRRGTVKKTRLSEYDSNRSG--GVIAINLREDADGQPDE 674

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +V     ++  S  G   +          P  R  + +  +   + + +  +   
Sbjct: 675 LVSARLVDATDDLILVSRKGQSIRFTASD-EAMRPLGRATSGVTGMKFREDDELLAMDVV 733

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                  +  ++   T+ G  +R  + ++    R G   K+A  +++R +++      ++
Sbjct: 734 R------DGAHLFVVTEGGFAKRTSVDEYRVQGRGGLGIKVANLVEARGDLVGALVTDED 787

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +++L+  + G+ VR  ++ +    GR + GV      K D++I++A  +  +   D    
Sbjct: 788 DEVLVIMERGKIVRSAVNQV-HLTGRTTQGVTFAKPDKNDRIIAVARNVERNLGDDIDSE 846

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                S    + + D ++       +      SEE  
Sbjct: 847 ESGEGSDGGAVTTSDDQQHPDDAVVTPDLSTGSEEDA 883


>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 814

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/895 (40%), Positives = 526/895 (58%), Gaps = 95/895 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I DEM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+ +N  Y K 
Sbjct: 5   NTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ++SLR +L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ KDTV+F PN+D S +EP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 125 LTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ D    +IDNP+  L+ LM+ ++GPDFPTG +ILGR GIK+AYATG G +V+R  +
Sbjct: 185 LTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARA 244

Query: 255 HIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           H+     +G R QI+++E+PYQVNKA ++++IA L RE++I  IA++RDESDRQG RVVI
Sbjct: 245 HVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR      ILN LY++T+LQ+ F VNM+AL   +P    L   L  +VAFR+E++ RR
Sbjct: 305 ELKRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +K+ L  AR RAH+L GL IA+ NLD ++ +IR + N +TARRELM R            
Sbjct: 365 SKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS++Q +AIL+L+L RL  L R  I  E   +  +I    D+L+
Sbjct: 413 --------------FELSQLQAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  ++L ++K +L  VK      RRT I  +G+++  +ED I  + MVVT++  G++KRV
Sbjct: 459 NPRKVLSLVKDDLAEVKARYGDARRTEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGS 610
           P  VYR Q R G+G+S +  R+ D V  + +  TH SVL F++ G ++  K   +P    
Sbjct: 519 PTEVYRLQHRAGRGKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLL 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G A+IN++ L + ERIT+++     +   +   ++ AT  G  +R KLSDF  +  
Sbjct: 579 RTAKGIAIINLVPLAENERITSMIAVSRFDEETS---LIMATSGGECKRTKLSDFAAVRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG +AM L   DE++       + +I+L T  G+ + FP++ +RV + R S GVRGI+L 
Sbjct: 636 SGLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHFPVADLRV-SQRASGGVRGITLE 694

Query: 731 KGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             D+V  + +      VL        ++  ++    QRR  SG        K      G 
Sbjct: 695 GDDRVAGLDVARPGHFVLVVTTGGYGKLTAVEEYPLQRRAGSGVLTFKVVDKTGKVAAGK 754

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + +   Q        ++  + +G   RT                                
Sbjct: 755 VVDREHQ--------VMIATAEGVVIRT-------------------------------- 774

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            PV   DQ     +KG ++           R+T+GV++    +++RVV+   + E
Sbjct: 775 -PVGTEDQ-----EKGIIV---------MGRSTQGVIVIRPDENDRVVNFATMVE 814


>gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1]
          Length = 891

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 479/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M     + +    Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V      G  V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGGDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
 gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
          Length = 806

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/892 (38%), Positives = 544/892 (60%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKLNIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIMGLEEVKNAYTTGRGKVK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  R +I+VTEIPYQVNK+ +++KIA+LV++K++  I+DLRDESDR+G R
Sbjct: 242 LRAEARIE-ESKGRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LMQR         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMQR--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEQLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  +K +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++   +D+   ++ +++F TK+G V++  L  +  I 
Sbjct: 573 SRTARGSNIINLIQIDADESVTQVLALDKDKE--DDQFIIFITKNGKVKKTSLDLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V     D +      ++   ++  +S  T                    
Sbjct: 690 NKDDEVISFDLV----KDNEFLAVISENGYGKKTELSNYT-------------------- 725

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                       T +  G G RT    ++I+ ++G    A  +   +E      +  ++ 
Sbjct: 726 ------------TQNRGGKGIRT----YKIAKKTGDVACAKALKNEDE------ILLISK 763

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
             ++I +  +G         I   SR+T GV++ +T K  + +V+V +  E 
Sbjct: 764 KAEVIRIKAEG---------ISTLSRSTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 10/249 (4%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + +++L++        +    L    +   +E   +E+  +  T  G   R    A +V 
Sbjct: 463 IIKDELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKV- 521

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEI 772
             R   GV  + +  GD +  M                ++  +K         +     I
Sbjct: 522 QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNI 581

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +L    + E         + K  +QFI+ +++ G  K+TS   +    ++G  I A   
Sbjct: 582 INLIQIDADESVTQVLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKTG--IIAIKF 639

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +E   L+ V  V  N+ +I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+
Sbjct: 640 DEGDE---LIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVI 696

Query: 893 SVERIRESE 901
           S + ++++E
Sbjct: 697 SFDLVKDNE 705



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 96/237 (40%), Gaps = 23/237 (9%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +D+ DEI+ +   + ++ +          RF  S I+      +  +  + L +   + 
Sbjct: 384 AIDNIDEIIHIIRTSYDDAL-----EKLMQRFGFSEIQ------AQAILDMRLKRLQGLE 432

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI------SEERC 790
              +    D          + ++ +  L+    +E+T +K   S +          +   
Sbjct: 433 KEKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFED 492

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL  +E   +T++ KG+ KR S+  +++ +R G+G+ A  +   +    +  +F    +
Sbjct: 493 MELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGD---FIKDMFATTTH 549

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
             ++  ++KG +  +   E+  ASR  +G  I +      DE V  V  + + +  D
Sbjct: 550 QDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDKEDD 606


>gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
 gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
          Length = 806

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/892 (39%), Positives = 543/892 (60%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R
Sbjct: 242 LRAEARIE-ESKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V     D +      ++   ++  +S  T                    
Sbjct: 690 NKDDEVISFDLV----KDNEFLAVISENGYGKKTELSNYT-------------------- 725

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                       T +  G G RT    ++I+ ++G    A  + K +E      +  ++ 
Sbjct: 726 ------------TQNRGGKGIRT----YKIAKKTGDVACAKALKKDDE------ILLISK 763

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
             ++I +  +G         I   SR T GV++ +T K  + +V+V +  E 
Sbjct: 764 QAEVIRIKAEG---------ISTLSRNTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score = 97.7 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 10/249 (4%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + +++LS+        +    L    +   +E   +E+  +  T  G   R    A +V 
Sbjct: 463 IIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKV- 521

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEI 772
             R   GV  + +  GD +  M                ++  +K         +     I
Sbjct: 522 QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNI 581

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +L    + E         + K  +QFI+ +++KG  K+TS   +    ++G  I A   
Sbjct: 582 INLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTG--IIAIKF 639

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +E   L+ V  V  N+++I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+
Sbjct: 640 DEGDE---LIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVI 696

Query: 893 SVERIRESE 901
           S + ++++E
Sbjct: 697 SFDLVKDNE 705



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +D+ DEI+ +   + ++ +    +          AI     +   G+    L      +
Sbjct: 384 AIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDEL 443

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE---RCQEL 793
           S  I        ++    + +      +I  +  EI +   D      + ++      EL
Sbjct: 444 SALI--------EKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMEL 495

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E   +T++ KG+ KR S+  +++ +R G+G+ A  +   +    +  +F    +  +
Sbjct: 496 LEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGD---FIKDMFATTTHQDL 552

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
           +  ++KG +  +   E+  ASR  +G  I +      DE V  V  + + +  D
Sbjct: 553 LFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKEND 606


>gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1]
          Length = 891

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/850 (38%), Positives = 479/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D +  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M     + +    Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLRSYDGAE---YLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V      G  V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGGDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 867

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/921 (35%), Positives = 497/921 (53%), Gaps = 94/921 (10%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   +      + + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDEQTTDARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    +++PD   + L+E    +I GPDFPTGA ILG 
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+  I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299

Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE+  R G R+VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRTK+ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM+                           + +  +Q  AIL L+L RL  L R  I
Sbjct: 420 RAGLME--------------------------LLDVDAIQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL+   R   II  EL  + D+    RRTRI+    +M  ED I
Sbjct: 454 MDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+             +  ++ F  DE             
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQH------------VANLLAFQPDEHI----------- 610

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
                                        ++L++ T    + ++L+TK G   + P+S  
Sbjct: 611 ----------------------------AQVLAIRTYEDADFLVLSTKRGLVKKTPLS-- 640

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            ++    S G+  I+L + +      +V       DE +  +       R  + + +  +
Sbjct: 641 -LYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRS 699

Query: 774 SLKNDSSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
             ++ S V G       E    E+      +L V+E G+ KRT   ++   +R   G+R 
Sbjct: 700 MGRSTSGVRGMKFRGDDELLSMEVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRV 759

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +  ++E G LV    V  ++ ++++++ G L++V  +++R  +R T GV+     + +
Sbjct: 760 GKL--VDERGDLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDEGD 817

Query: 890 RVVSVERIRESEIVDEAESTE 910
           R++++ R  +S   DE + +E
Sbjct: 818 RIIAITRNPDSGDEDETDESE 838



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 109/273 (39%), Gaps = 24/273 (8%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DF 576
           E +  +         D +V  +  G VK+ PLS+Y + R G  G   + +R++     D 
Sbjct: 608 EHIAQVLAIRTYEDADFLVLSTKRGLVKKTPLSLYNSPRSG--GIIAINLREDEDGKPDE 665

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIM 634
           +     +     ++  S  G   +           ++ G++   +  +     + + ++ 
Sbjct: 666 LVSAQTIMADEDLILVSRDGQAVRFTA---TEDQLRSMGRSTSGVRGMKFRGDDELLSM- 721

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCT 691
                E   +N  ++  T+ G  +R  + ++   +R   G    KL D R +++      
Sbjct: 722 -----EVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGDLVGALVVR 776

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            + D+++ T+ G+ V+   S +R    RN++GV      +GD++I  AI  + D+  ++ 
Sbjct: 777 PDEDVMVITESGKLVQVNASDVRP-TARNTMGVIFARPDEGDRII--AITRNPDSGDEDE 833

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
               ++  +     +   E       D + + +
Sbjct: 834 TDESENTESMEGTDAPADEASAPAGGDDTADTD 866


>gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
          Length = 841

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/910 (37%), Positives = 516/910 (56%), Gaps = 92/910 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EHI+   EE+E  I  + ++ EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +
Sbjct: 5   EHIV---EEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMYE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  N  + K AR+ G+V+GKYHPHG+A++YDAL R+AQD+SLR  ++  QGNFGS+DG
Sbjct: 62  MGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSIDG 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE ++ +    +L D+ KDTVDF PNYD S QEP VL A +P +L NG  GI
Sbjct: 122 DPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL E+ D   AVI+NPDIDL+ LM+ I+GPDFP+GA+I G+ GI +A++
Sbjct: 182 AVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIICGQQGIIDAFS 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG IV R    IE+     +QI+ T+IPYQVNKA +++KI EL R   +  I+ +RDE
Sbjct: 242 TGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDELRRND-LPAISAVRDE 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR+G R+V+ELK+G+   ++LN L+  T LQS F+VN +AL   +P+  +L  IL  ++
Sbjct: 301 SDREGIRIVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALVNGRPQLLSLKEILVHYI 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +RE+VV RRT+Y L KA +RAH+L+GL I + N+DEV+RII+ S +   A   L +   
Sbjct: 361 NYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQK--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AI++++L RL+ L  + I  EL  L +
Sbjct: 418 -----------------------AFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEV 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVT 541
           +I    D+L+ R ++LG++ QE   +  +    R T I    +   + ED I  E++VV 
Sbjct: 455 KIAYYKDLLADRRKILGVVAQETRELAAKYGDKRLTEIQRAEIGQTQVEDFIKNEEVVVV 514

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G++KRV    YR+Q RGG G  G  + ++DFV  L++ STH  V+F SS G  Y  
Sbjct: 515 ISNKGFIKRVVAEEYRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWI 574

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV  +P GS  ++G ++  ++ +  GE I++I+ F E     ++ Y+   TKHG  ++  
Sbjct: 575 KVHEIPEGSKVSKGSSIKQLIDITDGEEISSIINFTE---FHDDQYLFMVTKHGVTKKVG 631

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F      G  A+ LD  D ++  E  T  +D++  T  G+ +R     +R    R S
Sbjct: 632 LPAFRNAKSRGVRALFLDEGDIMVQSELMTDGDDMMFVTAGGRGLRIAGGDVRAMG-RAS 690

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   D VI +  V  +                                     
Sbjct: 691 RGVRGMKLLGDDTVIGLLKVDDS------------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           + IL ++EKG GK+ +  +F    R  +G     + +  +   L
Sbjct: 714 ----------------RRILMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKE--KTSYL 755

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           V    VND + +++++ +G  IR+ VN I    R   GV + +     + +V++  + + 
Sbjct: 756 VNALAVNDENDVVVITMQGQTIRIHVNLISTQGRNASGVRVVALKNPKDSIVALA-VTDY 814

Query: 901 EIVDEAESTE 910
              +E    E
Sbjct: 815 SRDEEDGVGE 824



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 106/253 (41%), Gaps = 16/253 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + +      +  +  V+  G  K+V L  +R  +   +G   + + + D +    
Sbjct: 601 EEISSIINFTEFHDDQYLFMVTKHGVTKKVGLPAFRNAKS--RGVRALFLDEGDIMVQSE 658

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +++    ++F ++ G   +     +      +RG   +  + L   + +  ++       
Sbjct: 659 LMTDGDDMMFVTAGGRGLRIAGGDVRAMGRASRG---VRGMKLLGDDTVIGLLKVD---- 711

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSR-DEILSVETCTQENDILL 698
             ++  ++  T+ G  ++   S+F +  R   G++  ++  +   +++      END+++
Sbjct: 712 --DSRRILMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKEKTSYLVNALAVNDENDVVV 769

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKH 757
            T  GQ +R  ++ +    GRN+ GVR ++L    D ++++A+  ++  + D        
Sbjct: 770 ITMQGQTIRIHVN-LISTQGRNASGVRVVALKNPKDSIVALAVTDYSRDEEDGVGEDATG 828

Query: 758 MSAQRRLISGDTE 770
                 +++   E
Sbjct: 829 DIMVGEIVNTSAE 841


>gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 843

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/897 (40%), Positives = 508/897 (56%), Gaps = 90/897 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRR+L  M +     ++ YVK 
Sbjct: 34  RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEV+G YHPHG++A+Y+ + RMAQ +S+R  LI+GQGNFGSVDGD  AA RYTE R
Sbjct: 94  AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEAR 153

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL D+ K+TV F PN+D + Q+P VL A +PN+LVNG  GIAVGMATNIP HN
Sbjct: 154 LTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHN 213

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E V+  +A+I NPDI L  LM+I+ GPDFPTG  I+G  G+  AYATG+GSI IR   
Sbjct: 214 LKEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKV 273

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I + +  RE IV+ EIPYQVNK  MLEKI +LV EK I  I+++ D SDR+G RV I +
Sbjct: 274 DIIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHV 333

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A VILNQL++ T LQ  + + M+A+   +P+ F+L  ILK++   R EVVV+RT+
Sbjct: 334 KKDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRTE 393

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA+ RAH+L GL IA+ N+DEV+RIIR S +   A+  LM                
Sbjct: 394 FDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMA--------------- 438

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T  LSE+Q  AILE+RL RLT L    I +EL  + I I +  DILS  
Sbjct: 439 -----------TFSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKP 487

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGYVKRV 551
            R+  II  EL  V       R T I    L+    +       E++VV +S   ++KR+
Sbjct: 488 DRVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRL 547

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  +R Q+RGGKG  G+  + EDFV  L    TH +++ FS+ G  +  KV+ LPI + 
Sbjct: 548 PMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATK 607

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +ARGK+L  +++LN  E IT++  F   + S    Y++  T+ G V++ +L +F    +S
Sbjct: 608 EARGKSLKAVINLNDDEIITSLFTFRNFDES----YLLMVTREGFVKKIQLDEFTNTKKS 663

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ V       D+ + +K G  +R  ++ +R   GR + GV  + L  
Sbjct: 664 GIIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRS-QGRTASGVTAMKLED 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D +  +  V                                                  
Sbjct: 723 DDSIAGITKVEP------------------------------------------------ 734

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +  +SE GFGKRT   +F    R GKG+    + + N  G  V +  V + D
Sbjct: 735 -----NTNLFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKN--GRAVGISSVKEED 787

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++++++  G  IRV V  I +  R+  GV + +T  ++ V     +RES+  D AES
Sbjct: 788 ELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESDS-DSAES 843


>gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
          Length = 935

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/919 (38%), Positives = 524/919 (57%), Gaps = 77/919 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   + D    + +    +  E   +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M +
Sbjct: 77  DRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHE 136

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR  LI G GNFGS+D 
Sbjct: 137 LGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDA 196

Query: 123 DPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           DPPAA RYTECRL+      LL DL ++TVDF PN+D S +EP +L AR PN+L+NG  G
Sbjct: 197 DPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASG 256

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI  A+
Sbjct: 257 IAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAF 316

Query: 242 ATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            TGRG +VIRG + IE   +   R  I++ EIPYQ NKA+++EKIA+LV  K +  ++D+
Sbjct: 317 RTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDI 376

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIELKRG+   ++LN LYR T+LQS FS NMV +   +P+   L  +L+
Sbjct: 377 RDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQ 436

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+ FR  VV RR ++ L++A++R H++ G+ + + NLDEV+  IR              
Sbjct: 437 AFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIR-------------- 482

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                           ++           LSE Q  AIL++ L RLT L R+    E  S
Sbjct: 483 ------------KASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKS 530

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDM 538
           L  +I +  ++LSS+ ++L +I++E + +K++   PRR+ + +    D+ED D I  E+M
Sbjct: 531 LRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEM 590

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++ +S  GYVKR+    +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V
Sbjct: 591 LLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTV 650

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y    +++P  S  A G  L+ ILSL+ GERIT+I+P  E  +   + Y+V  T +G ++
Sbjct: 651 YSSPAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAA---DQYLVMLTVNGYIK 707

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L+ F  I  +G IA++L   DE+  V+ C+  + + + ++ G  +  P + IR    
Sbjct: 708 KVSLNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRALG- 766

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ G   + L +GD+V SM I+  A     ++   ++                      
Sbjct: 767 RNTRGSVAMRLKEGDKVASMDIIPDALQKELDKTLEVQQR-------------------- 806

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                       Q   +K  ++L VSE G+GKR     FR S  +  G+     S  +  
Sbjct: 807 ------------QYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSED-- 852

Query: 839 GALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++       +
Sbjct: 853 -CLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGK 911

Query: 891 VVSVERIRESEIVDEAEST 909
           + S   I  ++   E E  
Sbjct: 912 IQSASLISAADADPEDEDA 930


>gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2]
          Length = 891

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 478/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M      S  +  Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLR---SYDDAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V         V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGDDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
 gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
          Length = 824

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/850 (40%), Positives = 516/850 (60%), Gaps = 35/850 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM+ I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++  ++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPIVNLLQLEKGEKVQAVVNIPE---GADDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R    R + GV
Sbjct: 632 FANIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFNESDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L   D V+   ++   D         Y K   A    + G   +     N +   G
Sbjct: 691 RGINLRPEDYVVGSGVLGANDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNG 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            ++     +    ++ I+ ++  G   R  + D   ++RS  G+R   V+  + + +L  
Sbjct: 751 PLAGVIVLD---SDEDIMVITTDGIMIRFKTADVSQTSRSTIGVRLIKVNDDSRVASLTI 807

Query: 844 VFPVNDNDQI 853
           V    + D+I
Sbjct: 808 VPTEAEQDEI 817


>gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
 gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
          Length = 834

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/893 (37%), Positives = 499/893 (55%), Gaps = 88/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+P H
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  ++GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312
             +E+T  DRE IVV E+PY V K  + EKIA+LV++ +I  +AD+RDE S+R G R++I
Sbjct: 265 LEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L++ F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR  LM R            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL  + ++    RR+ I+      ++++ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  S
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALS 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     E +       ++  TK G +++ +L       +
Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFD---PKQSIIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE+++V      +D ++TT  G  +R     IR    R + GV+GISL 
Sbjct: 656 RGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKMG-RAAAGVKGISLD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D  +S   +   ++                                            
Sbjct: 715 DDDICVSGNAIHKGES-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ ++E G GKR SS  F +  R GKG         N+ G +V+V  V D 
Sbjct: 731 ---------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIK--PDNKTGNVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+I++V+     I++  + I    R  KGV I + +   RV  +  +      
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPADNEE 832



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +           +  ++ V+ +G +K++ L      ++  +G   + + + D +  +
Sbjct: 615 EEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKK--RGILALTLENNDELVAV 672

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             V T    +  ++ G   +    ++      A G   +  +SL+  +   +     + E
Sbjct: 673 SPVQTGDDFIMTTAAGLALRITEEKIRKMGRAAAG---VKGISLDDDDICVSGNAIHKGE 729

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
           S      ++  T++G  +R     F    R GK  + +   ++   ++SV+T   +++I+
Sbjct: 730 S------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGNVVSVKTVGDKDEIM 783

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           + T     ++    +I     RN+ GV+ ++++ G +V  +A+V   + +  
Sbjct: 784 VVTTDDMTIKIKADSIPELG-RNAKGVKIVNISDGARVSDLAVVPADNEEKK 834


>gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1]
 gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2]
 gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1]
 gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 891

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 478/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M      S  +  Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLR---SYDDAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V         V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGDDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
 gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
          Length = 824

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/848 (40%), Positives = 491/848 (57%), Gaps = 37/848 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG- 64
           ++S+E       S++I DEM+N ++ YA++VI+GRAIPD+RDGLKPVHRRIL+ M     
Sbjct: 1   MTSEENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              +K Y K A+     MG YHPHG++AIYD L +MAQ +S R  L++GQGNFGS+DGD 
Sbjct: 61  NTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL KAA  LL+D+ K+TVDF PN+D S QEP VL +R PN+LVNG  GIAV
Sbjct: 121 AAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNLGEV D   A IDNP++ L+ +M+I+  PDFPTG  I+G  GI NAY TG
Sbjct: 181 GMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGTDGIVNAYQTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G +V+RG++ IE+     EQIV+TEIPYQVNKAAM+EKIA+LV+ K I  I+D+RDESD
Sbjct: 241 QGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G RV+IELK+   A+V+LN LY++T L+S F +  +A+   KP+  +L  +L+ F+A 
Sbjct: 301 KDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVDKKPKILSLAELLRHFIAH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+ + L KA +R H+L GL  A+  +D V+  IR SP    A+  L+ +    
Sbjct: 361 RVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSK---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 +  SE Q  AIL+++L RL  L +  I +E  SL + I
Sbjct: 417 ----------------------LGFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVS 543
            +   ILSS   +L ++K E   ++      RRT+I      D    D I  E  +V ++
Sbjct: 455 DKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMDLIPDEQTLVMLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
              Y+KRVPL +YR Q+RGG+G  G+  +DED V  +F+ +TH  +L F++ G VY  +V
Sbjct: 515 TQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRV 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P GS  ++GKA++N+L+L   E ++ ++P  + ++  N LY   ATK G V +    
Sbjct: 575 YEIPEGSRTSKGKAIVNLLNL-TDEEVSAVIPMRDFDAEKNLLY---ATKKGRVGKFSQD 630

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G I + L   DE++ V       D++LTT  GQ +RF    +R   GR + G
Sbjct: 631 LFSRPRTGGIIGITLLDGDELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRA-TGRGTQG 689

Query: 724 VRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           V GI L  +GD V ++ +V            + K    +     G   +       +   
Sbjct: 690 VIGIRLKFEGDYVCALTLVETQYLLMITDKGFGKRTEFEEFRGHGRGTQGVKSIVANFER 749

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G +           +  ++  +  G   RTS+ D  I  R  KG+R   V   +++ ++ 
Sbjct: 750 GKVVSSLAV---SDDDQVIITTAGGVVLRTSASDISIQGRGTKGVRVIRVDSGDKVTSVA 806

Query: 843 AVFPVNDN 850
            V P  D 
Sbjct: 807 IVPPDEDE 814


>gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3]
 gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4]
          Length = 891

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/850 (38%), Positives = 478/850 (56%), Gaps = 45/850 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ + KC
Sbjct: 25  GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L++GQGNFGS   D  AA RYTEC+
Sbjct: 85  SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ +DTVDF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204

Query: 195 LGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV +     + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +
Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V  +E+    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R
Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A   V++N LY++T+LQ  F  NM+AL    P    L   +  ++  + EV+
Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A   AH+   L  A+  LDEV+ +IR SPN E A   L +          
Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQE---------- 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q RAIL+++L RL  L R  I + L  L   I +   
Sbjct: 435 ----------------LLDIDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   II  EL  + D+    RRTRI+    D  +ED I  +D+VVT++  GY K
Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R    +YR Q+RGGKG  G  +R +D V  LF  + H  +LFF+++G VY+ KVW+LP  
Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +  +LS    E+I  +M      S  +  Y++ AT+ G V++  L  +    
Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTLR---SYDDAEYLLLATRKGMVKKTALKAYDSSR 655

Query: 670 RSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGI 727
           ++G IA+      DE++  E C+  +D+LL ++ GQ +RF     ++   GR + GV G+
Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+++SM+I+ H+D   D+R  +        +  +                  +SE
Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQRRGGVGIKAMALSE 774

Query: 788 ERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ER   +      +   I+ +   G   R++  +     RS  G++   V         V+
Sbjct: 775 ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSV----RGDDAVS 830

Query: 844 VFPVNDNDQI 853
           +  VN    +
Sbjct: 831 IIAVNPEHTV 840


>gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
 gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
          Length = 857

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/866 (39%), Positives = 493/866 (56%), Gaps = 72/866 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 3   RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC+
Sbjct: 63  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  +L D+ ++TVDF  NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP   
Sbjct: 123 LMPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPP-- 180

Query: 195 LGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             +V  G    +++PD   +     L+E I+GPDFP+GA+++GR GI+ AY TGRGSI +
Sbjct: 181 --QVAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVVGRKGIEEAYRTGRGSITM 238

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R
Sbjct: 239 RAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 297

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+
Sbjct: 298 LVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 357

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 358 VRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM----------- 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G + + E+Q  AILE++L RL  L R  I  E + L  +I E  +
Sbjct: 407 ---------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNE 451

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S SR   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT++H GYVK
Sbjct: 452 ILRSESRQRSIVSEELAAIVEKFGDDRRSKLVPFDGDMSMEDLIAEEDIVVTITHGGYVK 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 512 RTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDA 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+ + N+L+    E+I  I+   + E++    Y++ ATK G V++  L D+    
Sbjct: 572 GRDARGQHVANLLAFQPDEKIAQILAIRDYEAA---PYLILATKGGLVKKTALKDYDSPR 628

Query: 670 RSGKIAMKLDS---------RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGR 719
             G IA+ L            DE++  E  + E+D+LL +K  Q +RF  +   +   GR
Sbjct: 629 SGGVIAINLRETGADGADGAADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPMGR 688

Query: 720 NSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEI 772
            + GV+G+S  +GD+++SM++V          D  Y +R    ++    R  +     +I
Sbjct: 689 ATSGVKGMSFREGDELLSMSVVRPGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKI 748

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              +        + E            IL ++  G   RT   + R + R   G++  ++
Sbjct: 749 VEDRGSLVGALVVDE---------TDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINL 799

Query: 833 SKINEIGALV-------AVFPVNDND 851
            K + +  +            V++ND
Sbjct: 800 GKRDAVVGIARNAEAGQDADEVDEND 825



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 102/276 (36%), Gaps = 18/276 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG-------KGRSGVVMRDE 574
           E +  +           ++  +  G VK+  L  Y + R GG       +  +       
Sbjct: 590 EKIAQILAIRDYEAAPYLILATKGGLVKKTALKDYDSPRSGGVIAINLRETGADGADGAA 649

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++ 
Sbjct: 650 DELIGAELVSAEDDLLLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLSMS 708

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCT 691
                       +V  AT  G  +R  + ++    R G   K A  ++ R  ++      
Sbjct: 709 VVR------PGTFVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVD 762

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           + ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  D DE 
Sbjct: 763 ETDEILAITLGGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGQDADEV 821

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                 +  +    + + +   +    S   G   E
Sbjct: 822 DENDIDIDTETTEAAVEGQAAEAAGGTSPSAGEHEE 857


>gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
 gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
          Length = 834

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/893 (37%), Positives = 500/893 (55%), Gaps = 88/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+PTH
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  I+GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312
             IE+T  DRE IVV E+PY V K  + EKIAELV++ +I  +AD+RDE S+R G R++I
Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L++ F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLFKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR  LM R            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL  + ++    RR+ I+      ++++ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKKIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  +
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     E +       ++  TK G +++ +L       +
Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFD---PKQSIIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE+++V      +D ++TT  G  +R     IR    R + GV+GI+L 
Sbjct: 656 RGILALTLENNDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKMG-RAAAGVKGIALD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D  +S   +   ++                                            
Sbjct: 715 DDDICVSGNAIHKGES-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ ++E G GKR SS  F +  R GKG         N+ G +V+V  V D 
Sbjct: 731 ---------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIK--PDNKTGKVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+I++V+     I++  + I    R  KGV I + +   RV  +  +      
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPCDNEE 832



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 97/232 (41%), Gaps = 15/232 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E +           +  ++ V+ +G +K++ L      ++  +G   + + + D +  +
Sbjct: 615 EEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKK--RGILALTLENNDELVAV 672

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             V +    +  ++ G   +    ++      A G   +  ++L+  +   +     + E
Sbjct: 673 SAVQSGDDFIMTTATGLALRITEEKIRKMGRAAAG---VKGIALDDDDICVSGNAIHKGE 729

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
           S      ++  T++G  +R     F    R GK  + +   ++   ++SV+T   +++I+
Sbjct: 730 S------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGKVVSVKTVGDKDEIM 783

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           + T     ++    +I     RN+ GV+ ++++ G +V  +A+V   + +  
Sbjct: 784 VVTTDDMTIKIKADSIPELG-RNAKGVKIVNISDGARVSDLAVVPCDNEEKK 834


>gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716]
          Length = 836

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/839 (40%), Positives = 514/839 (61%), Gaps = 33/839 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++E    IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GS
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM         
Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMD-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL+LRL RLTGL R+ I +E   L   I + 
Sbjct: 414 ------------------DYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ + R+  II  EL+ ++++    RRT + V  + ++EDED I  ED++VT++H G
Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F 
Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINIAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R    R++ GVRG
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMG-RSAAGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             L  GD +I  A +   D         Y K   A    I G         N +   G +
Sbjct: 694 ARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPL 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +          ++ ++ V++KG   R        + RS  G+    +   + +  +  V
Sbjct: 754 A---GLTTVQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKV 809


>gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 816

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/862 (38%), Positives = 516/862 (59%), Gaps = 86/862 (9%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           ++P    ILFGMM +G   +K Y K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R 
Sbjct: 1   MEPKGFEILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++++GQGN+GSVDGD  AA RYTECRL+K    ++ DL K+TVD + N+D S QEP V+ 
Sbjct: 61  MVVDGQGNYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
            R PN+LVNG  GIAVGMATN+PTHNL EV+D C+A I+N DI+++ LM  ++ PDFPTG
Sbjct: 121 TRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTG 180

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             I G +G++ AY TGRG +++R  + IE TS   ++IV+TEIPY VNKA +++ IA+L 
Sbjct: 181 GYIYGMSGVREAYLTGRGRVIMRARAEIE-TSSTHDKIVITEIPYGVNKAELIKNIADLA 239

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            +K+I  I++  DESDR+G R+VI++KR A+A V+LN+LY+ T LQ+ FSVN VAL   +
Sbjct: 240 NDKKIEGISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGR 299

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P    L  ++K FV  R EVV+RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR + 
Sbjct: 300 PRLLNLKDMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAK 359

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P  A   L++R                            L+E+Q+RAI+E+RL +LTGL
Sbjct: 360 TPNDAIVGLIER--------------------------FQLTEIQSRAIVEMRLRQLTGL 393

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +D +  E   +   I    +ILS+      +I  EL+ VK +    RR+ IV    +  
Sbjct: 394 MQDQLHAEYEEVMKMIAYYEEILSNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFN 453

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED    ++M++T+SH+GY+KR PLS +RAQ RGG G  G   RD DF+  ++  + H +
Sbjct: 454 PEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNT 513

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNL 646
           ++FF+  G  Y  KV+ +P G+  ++G+A+ N+L+++  + +   +      D    N+ 
Sbjct: 514 MMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSH 573

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           YV+F TK+G +++  L  + +  ++G  A+ +   D ++ V     +N+I++  + G+ +
Sbjct: 574 YVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAI 633

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  SA+RV   R + GVRG++L +   D+V+ M  +   +A+                 
Sbjct: 634 RFHESAVRVMG-RTATGVRGMTLDEDGQDEVVGMICIKDPEAE----------------- 675

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              I+ VSE+G+GKR+   D+R +NR G
Sbjct: 676 ----------------------------------TIMVVSEQGYGKRSDIEDYRKTNRGG 701

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG++  +++  ++ G LV +  V D++ +++++  G  IR+ V ++RI  RAT+GV + +
Sbjct: 702 KGVKTMNIT--DKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLIN 759

Query: 885 TAK-DERVVSVERIRESEIVDE 905
             K ++ + SV ++    + DE
Sbjct: 760 LEKRNDEIGSVCKVTSESMEDE 781



 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 116/258 (44%), Gaps = 16/258 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              +    V+  +  G +K+  L  Y   R+   G + + +R++D V ++ + +    ++
Sbjct: 567 TDFINSHYVLFCTKNGVIKKTLLEQYSRPRQ--NGVNAITIREDDRVIEVRMTNGDNEII 624

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYV 648
             +  G   +     + +    A G   +  ++L++   + +  ++   + E+      +
Sbjct: 625 IANRNGRAIRFHESAVRVMGRTATG---VRGMTLDEDGQDEVVGMICIKDPEAE----TI 677

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQC 705
           +  ++ G  +R+ + D+ + NR GK    ++  D+   ++++++ T +ND+++  K G  
Sbjct: 678 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGIT 737

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +R  ++ +R+   R + GVR I+L K  D++ S+  V     + +  +            
Sbjct: 738 IRLKVADVRIMG-RATQGVRLINLEKRNDEIGSVCKVTSESMEDEIPVDDENSPIPTINE 796

Query: 765 ISGDTEEITSLKNDSSVE 782
           + G+ E+  S    ++ +
Sbjct: 797 VEGEEEDYNSDNKVNNED 814


>gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 806

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/901 (38%), Positives = 543/901 (60%), Gaps = 96/901 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I         I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM
Sbjct: 1   MTERKI--------NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+  ++KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+
Sbjct: 53  QQQGLFPDRKYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSI 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  
Sbjct: 113 DGDGAAAPRYTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNA
Sbjct: 173 GIAVGMATNMAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + IE  S  R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLR
Sbjct: 233 YTTGRGKVRLRAEARIE-ESKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLR 291

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  
Sbjct: 292 DESDRKGMRIVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDH 351

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LM+R
Sbjct: 352 YLVHQEIVVRRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER 409

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE+Q +AIL++RL RL GL ++ ++NE + L
Sbjct: 410 --------------------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDEL 443

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++  +IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +
Sbjct: 444 SALIEKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFI 503

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+++ GY+KR+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY 
Sbjct: 504 TITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYS 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++ 
Sbjct: 564 LKAYEVPEASRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKT 621

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS +  I ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN
Sbjct: 622 SLSLYENIRKTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RN 680

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           ++GV+ I+L K D+VIS  +V     D +      ++   ++  +S  T           
Sbjct: 681 AIGVKAITLNKDDEVISFDLV----KDNEFLAVISENGYGKKTELSNYT----------- 725

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                                T +  G G RT    ++I+ ++G    A  +   +E   
Sbjct: 726 ---------------------TQNRGGKGIRT----YKIAKKTGDVACAKALKNEDE--- 757

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRE 899
              +  ++   ++I +  +G             SR T GV++ +T K  + +V+V +  E
Sbjct: 758 ---ILLISKQAEVIRIKAEGI---------STLSRNTSGVLLKNTDKGEDAIVAVAKYFE 805

Query: 900 S 900
            
Sbjct: 806 E 806



 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 10/249 (4%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + +++LS+        +    L    +   +E   +E+  +  T  G   R    A +V 
Sbjct: 463 IIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKV- 521

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEI 772
             R   GV  + +  GD +  M                ++  +K         +     I
Sbjct: 522 QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNI 581

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +L    + E         + K  +QFI+ +++KG  K+TS   +    ++G  I A   
Sbjct: 582 INLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTSLSLYENIRKTG--IIAIKF 639

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +E   L+ V  V  N+++I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+
Sbjct: 640 DEGDE---LIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVI 696

Query: 893 SVERIRESE 901
           S + ++++E
Sbjct: 697 SFDLVKDNE 705



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +D+ DEI+ +   + ++ +    +          AI     +   G+    L      +
Sbjct: 384 AIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDEL 443

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE---RCQEL 793
           S  I        ++    + +      +I  +  EI +   D      + ++      EL
Sbjct: 444 SALI--------EKLTEILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMEL 495

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E   +T++ KG+ KR S+  +++ +R G+G+ A  +   +    +  +F    +  +
Sbjct: 496 LEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGD---FIKDMFATTTHQDL 552

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
           +  ++KG +  +   E+  ASR  +G  I +      DE V  V  + + +  D
Sbjct: 553 LFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKEND 606


>gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 836

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/839 (40%), Positives = 514/839 (61%), Gaps = 33/839 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++E    IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  ++ D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GS
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM         
Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMD-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL+LRL RLTGL R+ I +E   L   I + 
Sbjct: 414 ------------------DYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ + R+  II  EL+ ++++    RRT + V  + ++EDED I  ED++VT++H G
Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F 
Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R    R++ GVRG
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMG-RSAAGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             L  GD +I  A +   D         Y K   A    I G         N +   G +
Sbjct: 694 ARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPL 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +          ++ ++ V++KG   R        + RS  G+    +   + +  +  V
Sbjct: 754 A---GLTTVQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKV 809


>gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 873

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/862 (39%), Positives = 490/862 (56%), Gaps = 45/862 (5%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E  + + E E   I  V I  EMQNSYL YA++VI+GRA+P++RDGLKPVHRRIL+ M 
Sbjct: 16  AETTLVAAEAEAGRINYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAMY 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   N  + KC R+ G+V+ K+HPHG+ A+YDALAR+ Q WSLR  LI GQGNFGS  
Sbjct: 76  DGGFRPNAGFYKCMRVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSPG 135

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
              PAA RYTEC++   A  ++ D+ ++TVDF  NYDG  QEPVVL AR+PN+LVNG  G
Sbjct: 136 NLGPAAPRYTECKMAPLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSEG 195

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGI 237
           IAVGMAT IP HNL EV +G    +D+P+   + L+     I++GPDFPTGA ILG+T I
Sbjct: 196 IAVGMATRIPPHNLREVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATILGKTAI 255

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI+ R V +IE+    R+ +VVTE PYQVN   +  KIA+LV++  +  IA
Sbjct: 256 EQVYRTGRGSIIQRAVVNIEEIQN-RQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGIA 314

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE SDR G R+VI LKR A A V+LN LY+ T LQS F  NM+AL    P   +L G
Sbjct: 315 DIRDETSDRSGQRLVIVLKRDAVAKVVLNNLYKRTDLQSSFPANMLALVDGVPRTLSLDG 374

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            +  +V  + EV++RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  
Sbjct: 375 FVHYWVKHQVEVIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARVG 434

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                            + + EVQ  AIL ++L RL  L R  I +E
Sbjct: 435 LMD--------------------------LLKIDEVQADAILAMQLRRLAALERQKILDE 468

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  ++++  DI+++ +R   I+ +EL  + +     RRT IV    +M DED I  E
Sbjct: 469 HAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFGDERRTAIVPFNGEMTDEDLIPEE 528

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVT++  GY KR  +  Y+AQ RGGKG  G  +R +D V   F+ +TH  +LFF++LG
Sbjct: 529 EVVVTITRDGYAKRTRVDNYKAQHRGGKGVRGAKLRQDDVVEHFFVTTTHHWLLFFTNLG 588

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + +P G   +RG+ + N+L+    E I+ ++   + E +    Y+V ATK G 
Sbjct: 589 RVYRAKGYEIPEGGRDSRGQHVANLLAFQPDEAISQVLAIRDYEQAQ---YLVLATKSGL 645

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS 711
           V++  L+D+      G IA+ L        DE++S      E+D++L +  GQ +RF  +
Sbjct: 646 VKKTALADYNSPRSGGLIAINLRETEDGQVDELVSAALVNAEDDLILVSCGGQSLRFNCT 705

Query: 712 AIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDT 769
              V   GR++ GVRG+   + D +++M ++ H +D        + K  +     + G  
Sbjct: 706 DEAVRPMGRSTSGVRGMRFREDDALLTMEVIEHDSDLLVVTEGGFAKRSAIDTYPVRGRG 765

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                + N     G +          +E  +L + E G   R    +   + R+ +G+  
Sbjct: 766 GLGVKVANLVEDRGGL---VGALKVHEEDEVLVIMESGNIVRIPVAEISRTGRTTQGVTF 822

Query: 830 TDVSKINEIGALVAVFPVNDND 851
              ++ + I A+      + +D
Sbjct: 823 ARPNEGDRIIAVARNLETSLDD 844



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 97/258 (37%), Gaps = 14/258 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +       +   +V  +  G VK+  L+ Y + R GG     +   ++   D + 
Sbjct: 620 EAISQVLAIRDYEQAQYLVLATKSGLVKKTALADYNSPRSGGLIAINLRETEDGQVDELV 679

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +V+    ++  S  G   +       +  P  R  + +  +   + + + T+     
Sbjct: 680 SAALVNAEDDLILVSCGGQSLRFNCTDEAV-RPMGRSTSGVRGMRFREDDALLTMEVIEH 738

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           D        ++  T+ G  +R+ +  +    R G   K+A  ++ R  ++      +E++
Sbjct: 739 DSD------LLVVTEGGFAKRSAIDTYPVRGRGGLGVKVANLVEDRGGLVGALKVHEEDE 792

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L+  + G  VR P++ I    GR + GV      +GD++I++A  L    D  E     
Sbjct: 793 VLVIMESGNIVRIPVAEI-SRTGRTTQGVTFARPNEGDRIIAVARNLETSLDDAEEAENK 851

Query: 756 KHMSAQRRLISGDTEEIT 773
              S          E   
Sbjct: 852 SEESGPETAEVPALEAAE 869


>gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy]
 gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy]
          Length = 855

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/906 (39%), Positives = 516/906 (56%), Gaps = 90/906 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E  E    SV +++EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +MG+  N
Sbjct: 2   EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + KCARI G+V+GKYHPHG+A++YDAL R+AQD+SLR  ++  QGNFGS+DGDP AA 
Sbjct: 62  TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ +    +L D+ K+TV+F PNYD S QEP VL A +P +L NG  GIAVGMAT
Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNL E+ D   AVIDNPDI +D LME I+GPDFP+G +I G  GIK+A+ TGRG I
Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGGIICGLQGIKDAFMTGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R V  IE +  D +QIV TEIPYQVNKA +++KI +L ++  I  I+ +RDESDR+G 
Sbjct: 242 VVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK GA   V+LNQL+  T+LQS F+VN +AL   +P+  TL  +L  ++  REEV
Sbjct: 302 RIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALVQGRPQMLTLKDMLVYYIRHREEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA++RAH+L GL I + N+DEV++II+ S +   A   L+ R        
Sbjct: 362 VTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L ++Q +AI++++L RL+ L    I  EL  L  +I    
Sbjct: 414 ------------------FGLDQIQAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
           ++LS   ++L +++ E+ ++   L     R T+I  E L     ED I  E +VV +S+ 
Sbjct: 456 EVLSDEGKILKLVQSEVRALPSSLVPKDRRLTKIAREELGQSTLEDFIKDEQVVVLISNK 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+ KR+    Y A  R GKG     ++D DFV  +F+  TH  V+F ++ G  Y  KV+ 
Sbjct: 516 GFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVFE 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G ++ NIL L   E+IT+I+ F E      + Y++ AT+ G V++  L++F
Sbjct: 576 IPEASKTAKGTSIKNILQLETTEKITSIISFKE---FSEDHYLMMATRDGVVKKVSLNNF 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +     G  A+ LD  DE+LS +   + ++++L TKLG+ +RF    +R    R S GVR
Sbjct: 633 VNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGLRFRQDNVRAMG-RASRGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   DQV  +  V                                            
Sbjct: 692 GIRLLANDQVAGLLKVDST----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + IL ++E G GK+ +   F +  R  +G +   +    +   +V V 
Sbjct: 711 ------------KRILMITENGQGKQVNFDSFTVHGRGTQGQKIYRL--GGKASFIVGVL 756

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVD 904
            V+D + ++  +  G  +RV VN I I  R   GV + S     + +V++    E +  +
Sbjct: 757 SVDDENDVVCATLMGQTLRVHVNAISIQGRNAAGVKVVSMKFAGDSIVAIAS-TERDDEE 815

Query: 905 EAESTE 910
           E E  E
Sbjct: 816 EVEIPE 821


>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana]
 gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 950

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/910 (39%), Positives = 520/910 (57%), Gaps = 79/910 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 97  DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216

Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I  + +  +A   L           
Sbjct: 457 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSE-------- 508

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AILE+ L RLT L R    +E +SL  +I +  
Sbjct: 509 ------------------YGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 550

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ VS  GY
Sbjct: 551 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 610

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 611 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAE---DRYLLMLTVNGCIKKVSLKLFSG 727

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  + RN+ GV  +
Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 786

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+  +     E                                   SE
Sbjct: 787 RLKNEDKIASMDIIPASLRKDMEEK---------------------------------SE 813

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+     ++ +    L AVF V
Sbjct: 814 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDR---LAAVFVV 870

Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                     ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   I  
Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930

Query: 900 SEIVDEAEST 909
           ++  +E E T
Sbjct: 931 AD-EEETEGT 939



 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 11/254 (4%)

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L D     R   +    DS D +  ++    E  ++  ++ G   R       +   R
Sbjct: 568 IELKDRFSSPRRS-MLEDSDSGD-LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNL-QHR 624

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLK 776
            ++G     L   D +    +    D      D  I Y                      
Sbjct: 625 GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQI 684

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              S    ++         +++++L ++  G  K+ S   F  S     GI A  ++  +
Sbjct: 685 LSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLF--SGIRSTGIIAIQLNSGD 742

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           E   L  V   + +D + + S  G +     + +R  SR TKGV       ++++ S++ 
Sbjct: 743 E---LKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDI 799

Query: 897 IRESEIVDEAESTE 910
           I  S   D  E +E
Sbjct: 800 IPASLRKDMEEKSE 813


>gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
 gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
          Length = 860

 Score =  677 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/915 (37%), Positives = 518/915 (56%), Gaps = 97/915 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    I  V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G  +N 
Sbjct: 2   EDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCAR  G++MGKYHPHG++++Y+ L R+AQ W++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PTRKCARAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+  +TVDF+ N+DG F+EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E ++ C+A ID   +I +D LM+ ++ PDFPTG VI G  G+K A+ TGRG I
Sbjct: 182 MAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIRG + IE+     E+I++ EIPYQV K+ M+ KIA+LV EK+I  I+D+ DES  +G 
Sbjct: 242 VIRGKADIEEYH-SHERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++K+ A+A V+LN LY+Y+ L+S FSVN +AL   +P +  L  ++  FV  R +V
Sbjct: 301 RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVNGRPRQLNLKDLIGHFVDHRHDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L KA++R H+L GL IAV ++DEV+RIIR S     A   LM+         
Sbjct: 361 VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAI+++RL +LT L  D +++E N L   I    
Sbjct: 412 -----------------AFNLSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLN 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
             LS  +  + +I++E   + ++    RR+ IV    D+  ED    EDMV+T+SHLGY+
Sbjct: 455 LFLSDINMRMELIQEECREIIEKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   RDEDFV  ++  + H +++ F++ G VY  +V+ +P 
Sbjct: 515 KRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           GS  ++G+ + N+L L++  RIT  +       D    N  Y+VFA              
Sbjct: 575 GSKSSKGRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYLVFA-------------- 620

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                             T+ G   +  ++     A     GVR
Sbjct: 621 ----------------------------------TEQGLIKKTLLAHY---ANPRKTGVR 643

Query: 726 GISLAKGDQVISMAIVLHADADYDERICY--MKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            I+L   DQV+S+A+       +        ++    + R +      +  ++ D+    
Sbjct: 644 AINLRDDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDNDPND 703

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +       LK  ++ IL +SEKG+GKR+   D+RI+ R  KG++  +V+  ++ G L+ 
Sbjct: 704 KVVGMVVHRLKNSDETILVISEKGYGKRSRIDDYRITKRGAKGVKTINVT--DKTGQLID 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVE------- 895
           +  V D+D I++++  G  IR+ + ++R+  RAT+GV +    K  + + S+        
Sbjct: 762 IRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVVAEEE 821

Query: 896 ---RIRESEIVDEAE 907
               + E+++ D +E
Sbjct: 822 EPELVDEADLDDPSE 836


>gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 849

 Score =  677 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/848 (41%), Positives = 521/848 (61%), Gaps = 37/848 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A+++ + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLSHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLID---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 ----------------GYSLSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT + V  + ++EDED I  ED++VT++  GY+
Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++     E+  +  Y+ F T+ G V+R  +++F  I
Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINVR-GEAGESKDYLFFVTRLGVVKRTAVNEFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       IL+ TK G  VRF    +R+   R++ GVRGI 
Sbjct: 636 RTNGLRALTLRDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIMG-RSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD V+   +V   D         Y K        I G   +     N +   G ++ 
Sbjct: 695 LRDGDVVVGSDVVNPNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKNGALA- 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +   ++ I+  + +G   R ++     + R+  G+R   +    E GA VA    
Sbjct: 754 --GMTIIHGDEDIMVTTTQGVMIRFTASSVSQTGRATLGVRLIRL----EDGAKVATLAK 807

Query: 848 NDNDQIIL 855
            D++++++
Sbjct: 808 VDHEEVVV 815


>gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 820

 Score =  677 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/849 (41%), Positives = 519/849 (61%), Gaps = 35/849 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY TG+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L + D V+   ++   D         Y K   A    + G   +     N +   G
Sbjct: 691 RGINLRENDYVVGSGVLGKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNG 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            ++     +   K + I+ ++  G   R  + D   + RS  G+R   V+  +++ +L  
Sbjct: 751 PLAGVIVVD---KGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTI 807

Query: 844 VFPVNDNDQ 852
           V    + +Q
Sbjct: 808 VPTEAEQNQ 816


>gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
 gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
          Length = 836

 Score =  677 bits (1745), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/839 (40%), Positives = 514/839 (61%), Gaps = 33/839 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++E    IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GS
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM         
Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMD-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL+LRL RLTGL R+ I +E   L   I + 
Sbjct: 414 ------------------DYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ + R+  II  EL+ ++++    RRT + V  + ++EDED I  ED++VT++H G
Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F 
Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R    R++ GVRG
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMG-RSAAGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             L  GD +I  A +   D         Y K   A    I G         N +   G +
Sbjct: 694 ARLRDGDYLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPL 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +          ++ ++ V++KG   R        + RS  G+    +   + +  +  V
Sbjct: 754 A---GLTTVQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKV 809


>gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
 gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
          Length = 827

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/900 (39%), Positives = 531/900 (59%), Gaps = 89/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               I +++I + +Q+SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    K+
Sbjct: 6   HNDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSHGAKF 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+G+YHPHG+ A+YDAL RMAQ +S+R+ L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++ G  A++ NP+I+L  LME I+ PDFPTG  I G+ GI +AYATGRG I +R
Sbjct: 186 PHNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIFGKKGIMDAYATGRGRIKVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE   G+++ I++ E+PYQVNKA ++E IA LV++K I  ++++RDESDR+G RVV
Sbjct: 246 AKTHIE-KKGNKDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN L++ TS+Q  F + M+++   +P  F +I ILK F+  R+ +++R
Sbjct: 305 IELKKDAMSEIVLNNLFKQTSMQVTFGIIMLSILNQEPRIFGIIDILKHFINHRKTIIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL  A+  +DE++R+I+ S N E AR  L+             
Sbjct: 365 RTIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSE----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S +Q ++I+++RL RLTGL R+ I NEL  L   I     IL
Sbjct: 414 ---------------FDFSVIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S   L GII QE   +       RRT + +   D++ ED I  E MVVT++H GY+KRV
Sbjct: 459 KSEEVLHGIIDQEFDELLTIYTDVRRTDVEDDYDDIDVEDLIPNEPMVVTITHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y  Q+RGGKG+  V   ++DF+   F  +TH ++LF +  G ++  KV+++P GS 
Sbjct: 519 PLAQYEKQKRGGKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+L+L   E+I +I P  +     +   +VF TK G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLLNLVADEQIQSINPTTDFSEEKS---LVFFTKKGVVKRTNLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  D I++ +   +    + + TK+ QC++F +   R   GRN+ GVRGI   
Sbjct: 636 GVKAILLDDDDSIITAKIADKSIKYLFIMTKMSQCIKFDMEKTR-DQGRNTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+   I+ + + +                                          
Sbjct: 695 HAEDEVVDANIIANDEQE------------------------------------------ 712

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL VSEKG GKRT + ++R++NR G G+ A  ++       +V    V++
Sbjct: 713 ----------ILVVSEKGIGKRTDAGEYRLTNRGGSGVIAMKMTAKTGK-YVVGCLMVDE 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++ ++  G +IRV +  I  +SR T GV I    K + V SV R  +  I D+ E  
Sbjct: 762 EMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIV---KGDDVASVSRCPKQPIEDDEEDD 818


>gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
 gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
          Length = 821

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/849 (41%), Positives = 519/849 (61%), Gaps = 35/849 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY TG+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L + D V+   ++   D         Y K   A    + G   +     N +   G
Sbjct: 691 RGINLRENDYVVGSGVLGKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNG 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            ++     +   K + I+ ++  G   R  + D   + RS  G+R   V+  +++ +L  
Sbjct: 751 PLAGVIVVD---KGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTI 807

Query: 844 VFPVNDNDQ 852
           V    + +Q
Sbjct: 808 VPTEAEQNQ 816


>gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/838 (44%), Positives = 542/838 (64%), Gaps = 30/838 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK 
Sbjct: 3   DPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I I
Sbjct: 183 PPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYI 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IEK   ++++ IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R
Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E++
Sbjct: 303 IVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I  
Sbjct: 363 IRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINY 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L    +            Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  +
Sbjct: 423 LAKKHE-----------YYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKE 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYVK
Sbjct: 472 ILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP  
Sbjct: 532 YQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPES 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG+ ++N+L L+  ERIT I+P  + +   +NL +   T HG V+++ LS F +  
Sbjct: 592 SRHARGRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R    R + GV+GI +
Sbjct: 649 FAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTMG-RTASGVKGIKI 707

Query: 730 AKGDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            K D+V+S+ +      +L A  +   +   +     + R   G      + KN   +  
Sbjct: 708 KKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGA 767

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
               E+ Q        I+ +++ G   R    +  +  R+ +G+     SK  ++ AL
Sbjct: 768 IQVIEKDQ--------IMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVAL 817



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  LS ++  R    G   + +   D +  + 
Sbjct: 610 ERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFA--GIIAINLHANDELIGVA 667

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +   + +++ F+  G V +     +      A G   +  + + + +++ +++       
Sbjct: 668 LTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASG---VKGIKIKKNDKVVSLIV------ 718

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILL 698
             N   ++ ATK+G  +R K+SDF   +R+  G I++K+     +I+      +++ I++
Sbjct: 719 PKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVIEKDQIMM 778

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR  +S + V   RN+ GV  I  +K ++V+++  ++  
Sbjct: 779 ITDAGTLVRIRVSEVGVL-KRNTQGVILIRTSKNEKVVALQKIVDP 823


>gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 814

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/886 (38%), Positives = 506/886 (57%), Gaps = 89/886 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +E++ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  N+ Y K 
Sbjct: 9   KIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE MGKYHPHG++AIYD + R+AQ++S+R  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 69  ARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEAR 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           LQ+    +L D+ +DTV++ PN+D S +EP+VL ++ PN+LVNG  GIAVGMATN+P HN
Sbjct: 129 LQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHN 188

Query: 195 LGEVVDGCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           LGEVVD    +I+     D   LM  + GPDFPTG VILG+ GI +AY TGRG +V++G+
Sbjct: 189 LGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRGRLVVQGL 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            H+E+    +  +V+TEIPY VNK  M+E IA  V+ K I  + D+RDESDR+G RVV+E
Sbjct: 249 VHVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVLE 308

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           + R    D+++ QLYR + LQ+ F V  +AL   +P   +L  +L  F+  R  VV RRT
Sbjct: 309 VSRDVDPDLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRRTVVRRRT 368

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA  RAH+L GL  A+  +D V+ +IR S N   A+  L+               
Sbjct: 369 EFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAE------------- 415

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                        +  SE+Q +AIL+++L RLTGL RD + +E   L  +I+    IL S
Sbjct: 416 -------------LDFSEIQAQAILDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDS 462

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              L G+I +EL+++K +    RRT+IV+ +  D  DED I RED+VV +S  GY++RVP
Sbjct: 463 EKVLDGVIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDIVVMLSRDGYLRRVP 522

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  Q +GGKGR G  +R+ED V+ + + +TH  +  F++ G V+  K + +   S  
Sbjct: 523 LEDYSLQAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISE-SRT 581

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GK +   +SL   ER+ ++      ES     ++ F T+ G  +R   S+   + R+G
Sbjct: 582 GKGKLIGKYISLENDERVVSMKTRRGQESG----FLFFLTRRGIAKRLPSSELDNLTRAG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  + LD  DEI  +   +  +D+LL + +GQ +R      R    R++ GV+ + L  G
Sbjct: 638 RRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMG-RSARGVKAMRLKDG 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D++IS                                                      E
Sbjct: 697 DRIISG-----------------------------------------------------E 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +++  + VSE G GKRT+  DF + +R G G++   ++  +  G L A   V+++D+
Sbjct: 704 VVTEDRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVMSIN--SRTGLLAAATSVSEDDE 761

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           II+++ KG +IRV   EIR+  R   G ++      + VV +  + 
Sbjct: 762 IIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDLSVVN 807



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 17/218 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ +++ ++ G   R P+    +   +   G RG  L + D+V  M +    D   
Sbjct: 502 LIPREDIVVMLSRDGYLRRVPLEDYSL-QAKGGKGRRGARLREEDEVSLMGVSTTHDDIF 560

Query: 747 --DYDERICYMKH--MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                 R+  +K   +S  R        +  SL+ND  V    +         +  F+  
Sbjct: 561 LFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERVVSMKTR-----RGQESGFLFF 615

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++ +G  KR  S +     R+G+ +        +E   +  + P +  D ++LVS  G  
Sbjct: 616 LTRRGIAKRLPSSELDNLTRAGRRVVTL-----DEGDEIAQILPTSGMDDLLLVSAMGQA 670

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +RV  +E R   R+ +GV        +R++S E + E 
Sbjct: 671 LRVSEDEFRPMGRSARGVKAMRLKDGDRIISGEVVTED 708


>gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
 gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A
 gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
          Length = 839

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/902 (36%), Positives = 520/902 (57%), Gaps = 88/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++
Sbjct: 14  ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R
Sbjct: 74  PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ KDTVDF  NYDG  QEP VL A +PN+L NG  GIAVGM+T+
Sbjct: 134 YTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTS 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP+HNL E++ G + +IDNPD  ++ L+ +I+GPDFPTGA I+   GI++ + TG+G++V
Sbjct: 194 IPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVV 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+    R  +VVTEIPY VNK +++EKI ELV+ + I  IAD+RDES R+G R
Sbjct: 254 IRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P+   +   L  ++  + +V+
Sbjct: 313 LVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+T++ L K ++R H+L GL IA  N+DEV+ II+ S N + A   L +R         
Sbjct: 373 IRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L E+Q RA+L++RL  L+ L  + ++ E   L   I+ C  
Sbjct: 424 -----------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQ 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+ +   L +IK++L  + ++   PRR+ I+ G   D++DED I +E++V+T+S  GY+
Sbjct: 467 VLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYL 526

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P 
Sbjct: 527 KRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPP 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G    +G   +N++ +++ E+I  ++   + +    N Y  F TK+G ++R  LS+F  I
Sbjct: 587 GFRTNKGIPAVNLIKIDKDEKICALISVNDYQ----NGYFFFCTKNGTIKRTSLSEFANI 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              GK A+     D + SV   + ++DI + +  G  VRF    +R  + R ++GV GI+
Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGIN 701

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + + V  ++                                                 
Sbjct: 702 LNQCEFVNGLS------------------------------------------------- 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+V + G GK TS   +R++ R+ KG++   V+   + G +V    V 
Sbjct: 713 ----TSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTVF 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            N+ ++++S  G ++R+ + ++    + T GV +    + ER+ +V   ++ E +    +
Sbjct: 767 GNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTA 826

Query: 909 TE 910
           TE
Sbjct: 827 TE 828


>gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
 gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
          Length = 902

 Score =  676 bits (1743), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/851 (39%), Positives = 480/851 (56%), Gaps = 48/851 (5%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E ++  D   ++ +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 17  EPVLEGDVLVDR-VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFD 75

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   
Sbjct: 76  GGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGN 135

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++   A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GI
Sbjct: 136 DGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGI 195

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HNL EV DG    + NP        + L+  I+GPDFPTGA ILG  GI+
Sbjct: 196 AVGMATNIPPHNLREVADGVQWYLANPTASREELLEELLLRIKGPDFPTGATILGHKGIE 255

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRGSI +R V ++E+    R  +VVTE+PYQ N   +  KIAELV++ +I  IAD
Sbjct: 256 DAYRTGRGSITMRAVVNVEEL-EGRTCLVVTELPYQANPDNLAIKIAELVKDGKISGIAD 314

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           LRDE+  R G R+VI LKR A A V+LN LY++T LQ  F+ NM+A+    P   +L   
Sbjct: 315 LRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFAANMLAIVDGVPRTLSLDAF 374

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++ +VA + +V+ RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  L
Sbjct: 375 IRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGL 434

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           MQ                           + + E+Q RAIL+++L RL  L R  I++  
Sbjct: 435 MQ--------------------------LLDIDELQARAILDMQLRRLAALERQKIQDRH 468

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRE 536
             L   I E   IL+S  R   II  EL  +  +    RRT+I+ G   DM  ED I  E
Sbjct: 469 AELEALIAEYNSILASEERQREIISTELSEIVAKHGDDRRTKILMGFDGDMSMEDLIPEE 528

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVVT++  GYVKR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG
Sbjct: 529 EMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLG 588

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    E I  ++   + + +    Y+V ATK G 
Sbjct: 589 RVYRAKAYELVEAGRDAKGQHVANLLAFQPDEHIAQVLDLRDYQHA---PYLVLATKRGL 645

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++ +L D+     +G IA+ L   DE++S +  ++ +D++L +++GQ +RF  +   + 
Sbjct: 646 VKKTRLEDYDTNRSAGVIAINLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTATDDALR 705

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV G+   + D++++  +V       D    ++       +  + +   +   
Sbjct: 706 PMGRATSGVTGMKFREDDELLAADVV------KDGSFVFIVTEGGYAKRTAVEEYRLQGR 759

Query: 776 KNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                  G   EER   +      +E  +L V E G   R+S        R   G+    
Sbjct: 760 GGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAK 819

Query: 832 VSKINEIGALV 842
             K + I  + 
Sbjct: 820 PDKNDRIIEVA 830



 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 98/291 (33%), Gaps = 13/291 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D         +V  +  G VK+  L  Y   R    G   + +RD D +    
Sbjct: 620 EHIAQVLDLRDYQHAPYLVLATKRGLVKKTRLEDYDTNRSA--GVIAINLRDGDELVSAQ 677

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    ++  S +G   +       +  P  R  + +  +   + + +           
Sbjct: 678 LVSETDDLMLVSRMGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVK---- 732

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
             +  +V   T+ G  +R  + ++    R G   K+    + R  ++      +E+++L+
Sbjct: 733 --DGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLV 790

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             + G+ VR  ++      GR+++GV      K D++I +A       + +E        
Sbjct: 791 VMEGGKVVRSSVA-GVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEGEEAEAIDPEN 849

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
            A    ++GD   +                   E            E   G
Sbjct: 850 PAGSPAVAGDDVTLAEGAGSHGGSAEADSAPAVESDESSDNAELDEENTGG 900


>gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 882

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/880 (38%), Positives = 490/880 (55%), Gaps = 68/880 (7%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +     D   E         +  V +  EMQ SYL YA++VI+GRA+PD RDGLKPVH
Sbjct: 1   MADETHGEDHTPEDAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G   ++ Y KC+R+ G+VMG+YHPHG++AIYDAL R+ Q W++R  LI+G
Sbjct: 61  RRVLYAMYDGGYRPDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   D  AA RYTEC++   +  ++ D+ +DTVDF+ NYDG  QEPV L AR+PN
Sbjct: 121 QGNFGSAGNDGAAAPRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G   ++ +PD   D     L+ II+GPDFP GA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V  +E+    R  +VVTE+PY VN   +  KIA  V+
Sbjct: 241 TILGRKGIEDAYRTGRGSITQRAVVEVEEIQ-GRTCLVVTELPYMVNPDTLANKIASYVK 299

Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IADLRDES  R G R+VI LKR A A V+LN LY++T LQ  FS NM+AL    
Sbjct: 300 DGKVAGIADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDNV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   L+ +V  + +V+VRRT++ L KA +RAH+L G   A++ LDEV+ +IR SP
Sbjct: 360 PRTLSIDAFLRLWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + AR  LM+                           + + E+Q  AIL+L+L RL  L
Sbjct: 420 SSDEARTGLME--------------------------LLDVDEIQANAILDLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDM 527
            R  I  E   +   IK+  +IL++ +R   I+ +EL +V       RRT+I+ G   D+
Sbjct: 454 ERLKIEEEAQKIEELIKDYNEILATPARQREIVSEELDAVVQRYGDDRRTKILAGFDGDV 513

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E++VVT++  GY KR   ++YRAQ RGGKG +G  +R +D V   F+ STH 
Sbjct: 514 SMEDLIPEEEVVVTITRGGYAKRTQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHN 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++ G VY+ K + LP G   A+G+ + N+L+L   E I  ++  P+ +++    Y
Sbjct: 574 WLLFFTNTGRVYRAKAYELPEGMRDAKGQHVANLLALQPDEEIAEVLSIPDYDAAQ---Y 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKL 702
           ++ ATK G V++ +LS++      G IA+ L        DE++S      E+ +LL ++ 
Sbjct: 631 LMLATKSGLVKKTRLSEYDSNRTGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRK 690

Query: 703 GQCVRFPISAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICY 754
           G  +RF      +    R + GV G+     D +++M +V          +A + +R   
Sbjct: 691 GMSIRFAADDSTIRPTGRATSGVTGMKFKGEDTLLTMDVVTPGTYVFVVTEAGFAKRTPV 750

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            ++    R        +IT  + D      +SE            +  V E G   R+  
Sbjct: 751 EEYRLQGRGGFGIKVAKITEQRGDLVGGLIVSE---------GDDVFVVMEMGKVVRSKI 801

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +     R+  G+      K +    ++AV    + + I+
Sbjct: 802 DEVPAKGRNTMGVVFAKPGKKDR---IIAVTRGPEAEDIL 838



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 108/275 (39%), Gaps = 19/275 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E + ++           ++  +  G VK+  LS Y + R G  G   + +R+      D 
Sbjct: 614 EEIAEVLSIPDYDAAQYLMLATKSGLVKKTRLSEYDSNRTG--GVIAINLREMADGKSDE 671

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +V     +L  S  G   +       I  P  R  + +  +     + + T+   
Sbjct: 672 LVSARLVDAEDHLLLVSRKGMSIRFAADDSTI-RPTGRATSGVTGMKFKGEDTLLTMDVV 730

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     YV   T+ G  +R  + ++    R G   K+A   + R +++     ++ 
Sbjct: 731 T------PGTYVFVVTEAGFAKRTPVEEYRLQGRGGFGIKVAKITEQRGDLVGGLIVSEG 784

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +D+ +  ++G+ VR  I  +     RN++GV      K D++I++     A+   DE   
Sbjct: 785 DDVFVVMEMGKVVRSKIDEVPAKG-RNTMGVVFAKPGKKDRIIAVTRGPEAEDILDEVDE 843

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
                 A+    S D+++ T  ++D S E   ++E
Sbjct: 844 -STVSDAELDGESVDSDQSTETQDDQSAETQSADE 877


>gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 860

 Score =  675 bits (1742), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/896 (37%), Positives = 511/896 (57%), Gaps = 87/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    I  V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G  +N 
Sbjct: 2   EDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCAR  G+++GKYHPHG++++Y+ L R+AQ W++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PTRKCARAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+  +TVDF+ N+DG F+EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E ++ C+A ID   +I +D LM+ ++ PDFPTG VI G  G+K A+ TGRG I
Sbjct: 182 MAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIRG + IE+     E+IV+ EIPYQV K+ M+ KIA+LV EK+I  I+D+ DES  +G 
Sbjct: 242 VIRGKADIEEYH-GHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++K+ A+A V+LN LY+Y+ L+S FSVN +AL   +P    L  ++  FV  R +V
Sbjct: 301 RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVHGRPRLLNLKDLIGHFVDHRHDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L KA++R H+L GL IAV ++DEV+RIIR S     A   LM+         
Sbjct: 361 VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAI+++RL +LT L  D +++E N L   I    
Sbjct: 412 -----------------AFNLSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLN 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
             LS  +  + +I++E   + D+    RR+ IV    D+  ED    EDMV+T+SHLGY+
Sbjct: 455 LFLSDINMRMELIQEECREIIDKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   RDEDFV  ++  + H +++ F++ G VY  +V+ +P 
Sbjct: 515 KRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           GS  ++G+ + N+L L++  R+T  +   +   D+   N  Y+VFA              
Sbjct: 575 GSKSSKGRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYLVFA-------------- 620

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                             T+ G   +  ++     A     GVR
Sbjct: 621 ----------------------------------TEQGLIKKTLLAHY---ANPRKTGVR 643

Query: 726 GISLAKGDQVISMAIVLHADADYDERICY--MKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            I+L   DQV+S+A+       +        ++    + R +      +  ++ D     
Sbjct: 644 AINLRGDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDDDPND 703

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +       LK  ++ IL +SEKG+GKR+   D+RI+ R  KG++  +V+  ++ G L+ 
Sbjct: 704 KVVGMVVHRLKNSDETILVISEKGYGKRSLIDDYRITKRGAKGVKTINVT--DKTGQLID 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           +  V D+D I++++  G  IR+ + ++R+  RAT+GV +    K  + + S+  + 
Sbjct: 762 IRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVV 817


>gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6]
 gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6]
          Length = 876

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/907 (38%), Positives = 487/907 (53%), Gaps = 98/907 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + K
Sbjct: 27  DRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNK 86

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE 
Sbjct: 87  CARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTET 146

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++   A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 147 KMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPH 206

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV DG    + NP    + L+E     ++GPDFPTGA ILG  GI++AY TGRGS+ 
Sbjct: 207 NLREVADGVQWYLANPAATREELLEELLRRVKGPDFPTGATILGHKGIEDAYRTGRGSVT 266

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V ++E+    R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE+  R G 
Sbjct: 267 MRAVVNVEELQN-RTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQ 325

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQS FS NM+A+    P   +L   ++ +V  + +V
Sbjct: 326 RLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLSLDAFIRHWVTHQMDV 385

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  LM+         
Sbjct: 386 IARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLME--------- 436

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + E+Q RAIL+++L RL  L R  I++  + L   I E  
Sbjct: 437 -----------------LLDIDELQARAILDMQLRRLAALERQKIQDRHSELEALIAEYN 479

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
            IL+S  R   II  EL  + D+    RRT+I+ G   DM  ED I  E+MVVT++  GY
Sbjct: 480 AILASEERQREIISTELGEIVDKHGDDRRTKILMGFDGDMSMEDLIPEEEMVVTITRGGY 539

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L 
Sbjct: 540 VKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELM 599

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G+ + N            ++ F  DE                           
Sbjct: 600 EAGRDAKGQHVAN------------LLAFQPDEH-------------------------- 621

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 IA  LD +D         Q   ++L TK G   +  +          S GV  I
Sbjct: 622 ------IAQVLDLKDY-------QQSPYLVLATKRGLVKKTRLEDYDT---NRSAGVIAI 665

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  GD+++S  +V   D      +  +  M    R  + D       +  S V G    
Sbjct: 666 NLRDGDELVSAQLVSETDD-----LFLVSRMGQSIRFTATDDALRPMGRATSGVTGMKFR 720

Query: 788 ER----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           E       ++     F+  V+E G+ KRT+  ++R+  R G GI+     +  E G LV 
Sbjct: 721 EDDELLAADVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQE--ERGHLVG 778

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V + D++++V + G ++R  V  +    R T GV+     K++R++ V R  E  + 
Sbjct: 779 ALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLE 838

Query: 904 DEAESTE 910
           DE  + +
Sbjct: 839 DEESAED 845



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 98/264 (37%), Gaps = 13/264 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D     +   +V  +  G VK+  L  Y   R    G   + +RD D +    
Sbjct: 620 EHIAQVLDLKDYQQSPYLVLATKRGLVKKTRLEDYDTNRSA--GVIAINLRDGDELVSAQ 677

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    +   S +G   +       +  P  R  + +  +   + + +           
Sbjct: 678 LVSETDDLFLVSRMGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVT---- 732

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
             +  +V   T+ G  +R  + ++    R G   K+    + R  ++      +E+++L+
Sbjct: 733 --DGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLV 790

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             + G+ VR  ++      GR+++GV      K D++I +A       + +E       +
Sbjct: 791 VMEGGKVVRSSVA-GVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEDEESAEDDVTL 849

Query: 759 SAQRRLISGDTEEITSLKNDSSVE 782
           + +      +     +  ND + E
Sbjct: 850 AEESPAFVSEDASGDAEPNDDNTE 873


>gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
 gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
          Length = 865

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/853 (40%), Positives = 520/853 (60%), Gaps = 44/853 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  N+
Sbjct: 2   QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQDWSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 62  KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K +  +L DL K+TVDF+ N+D S QEP V+  + PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E VD   A IDN +I +D LM+ I  PDFPTG +I G  G+++A+ TGRG +V
Sbjct: 182 MAPHNLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGGIIYGYDGVRDAFHTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   + ++  G+R  I+VTEIPYQVNKA M+ + AELV++++I  I ++RDESDR+G R
Sbjct: 242 LRAKVNFDEI-GNRNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +PE+  L  I+  FV  R EV+
Sbjct: 301 IVYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVHGRPEQLNLKDIIHHFVEHRHEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           VRRT++ L KA++RAH+L G          LD  + IIR S NP+ A+  L++       
Sbjct: 361 VRRTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIE------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AIL+LRLARLTG+  D IR+E +++  EI  
Sbjct: 414 -------------------AFELSDIQAQAILDLRLARLTGMELDKIRDEYDAIMKEIAN 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++  R   IIK+ELL +K++    RRT I     +M  ED I  E +V+T+SH G
Sbjct: 455 LEDILANEPRRFQIIKEELLEIKEKYGDERRTEIDYSGGEMSIEDIIPNESVVLTISHAG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS Y+ Q RGG G      RD DF+  +   + H  +LFF+  G  Y  +V+ +
Sbjct: 515 YIKRTSLSEYKIQSRGGVGNKAATTRDSDFLEYIVSATNHQYMLFFTEKGRCYWLRVFEI 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           P GS  A+G+A+ N++++   ++I   +      D    N + VV  TK+G +++  L  
Sbjct: 575 PEGSKTAKGRAVQNLINIEPDDKIKAYIRTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEA 634

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+++   D++L        + I++ TK G+C+RFP   +R    R S+GV
Sbjct: 635 YSRPRVNGVNAIEIRDNDQLLGAYLTNGNSQIMIATKNGKCIRFPEEKVREVG-RGSIGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD+ I M +V     D +     +       +  + +   IT+      +  N
Sbjct: 694 RGILLEDGDEAIGMIVV----NDVENETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLN 749

Query: 785 ISEERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           I+E+    + ++    E  ++ +++ G   R    + R+  R+ +G++  ++ K +E   
Sbjct: 750 ITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMGMDEMRVMGRNTQGVKLINLKKNDE--- 806

Query: 841 LVAVFPVNDNDQI 853
           + A+  V  +  +
Sbjct: 807 IAAIAKVEMDKDV 819



 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 110/247 (44%), Gaps = 13/247 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V +  VV V+  G +K+  L  Y   R    G + + +RD D +   ++ + ++ ++  
Sbjct: 612 YVNQMSVVMVTKNGTIKKTSLEAYSRPR--VNGVNAIEIRDNDQLLGAYLTNGNSQIMIA 669

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    ++      + G   +  + L  G+    ++   + E    N  V+  +
Sbjct: 670 TKNGKCIRFPEEKVREVGRGSIG---VRGILLEDGDEAIGMIVVNDVE----NETVLVVS 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + D+   NR GK  + L+  ++   +++++  T E+ +++  K G  +R  
Sbjct: 723 EKGYGKRTAVEDYRITNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMG 782

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RV   RN+ GV+ I+L K D++ ++A V       ++     +        +  + 
Sbjct: 783 MDEMRVMG-RNTQGVKLINLKKNDEIAAIAKVEMDKDVEEDSEELEETEEGVVGSLFDNQ 841

Query: 770 EEITSLK 776
           E+ T+ +
Sbjct: 842 EDNTAPQ 848


>gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64]
 gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64]
          Length = 926

 Score =  675 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/899 (40%), Positives = 539/899 (59%), Gaps = 90/899 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + GI  V +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ +  
Sbjct: 75  DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 134

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  L++G GNFGS+DGD  AA R
Sbjct: 135 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 194

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD S +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 195 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 254

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  +A+ +NP+ID+  LME + GPDFPTGA+ILG  GIK+AY TG+GSI 
Sbjct: 255 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIP 314

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR ++ IE+ S  + +I+VTEIPY+V K A++EKIAELV++K+I  IADLRDES R+G R
Sbjct: 315 IRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIR 374

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+  +  V+LN+LYR T+LQ  ++VN VAL   +P+   L   L+ ++  +EEVV
Sbjct: 375 IVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVV 434

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KA+DR H+L GL IAV N+DEV+ II+ S     A+  L +R         
Sbjct: 435 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR--------- 485

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLTGL  +++  E+  L  EI+    
Sbjct: 486 -----------------FNLTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEF 528

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL++ S L+ +I +EL  +K++ +  RRT+I   +   + DED I + D+V+T S  G+V
Sbjct: 529 ILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTITDEDLIPQRDIVITTSAKGFV 588

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G   +   D+D +  +   +THT +L FS+   VY+ +   +P 
Sbjct: 589 KRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPE 648

Query: 609 GSPQARGKALINILS---LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            S Q++G A INI+    + +GERI +++P    ++   + Y+  ATK+G +++ +L+++
Sbjct: 649 LSRQSKGVAFINIIPSLRVKEGERIVSMLPV---DTYDEDHYLFTATKNGIIKKTRLTEY 705

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +IN +GK A  L   DE++     T E+ ILL     + V+F     R  + R + GV+
Sbjct: 706 ERINANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVK 764

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L     V S +                                              
Sbjct: 765 GITLDSHQTVSSTS---------------------------------------------- 778

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     + + ILT+ +KGFGK T    FR+  R GKG++  +       G +V   
Sbjct: 779 -------TSQEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSK---LAGDIVFAR 828

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            VN  D++++++  G  IR  +++I    RA KGV I +  K E + +VE I+  E  D
Sbjct: 829 FVNPQDELLIITTSGLTIRTAISQISQTGRAAKGVKIINLKKREEIQAVEIIKIDEKTD 887



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 104/268 (38%), Gaps = 14/268 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ M   D    +  + T +  G +K+  L+ Y   R    G+    +R+ D +    
Sbjct: 671 ERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYE--RINANGKYAFNLREGDELIRAM 728

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I++    +L  +    + K +       S  A G   +  ++L+  + +++        +
Sbjct: 729 IITDEDLILLANDEERIVKFQAIDFRPISRTATG---VKGITLDSHQTVSS------TST 779

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLT 699
           S     ++   K G  +    S F  I R GK    +      +I+       ++++L+ 
Sbjct: 780 SQEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSKLAGDIVFARFVNPQDELLII 839

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  G  +R  IS I    GR + GV+ I+L K +++ ++ I+   +    E       + 
Sbjct: 840 TTSGLTIRTAISQISQ-TGRAAKGVKIINLKKREEIQAVEIIKIDEKTDPEATMAATSVV 898

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISE 787
                 S +     +  ++  ++ N  E
Sbjct: 899 QSIYEQSQEINLDDNSNDEIDIDSNNEE 926


>gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 826

 Score =  675 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/841 (41%), Positives = 513/841 (60%), Gaps = 35/841 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL +RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ +++ DF+  L   STH ++LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R    R + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAMG-RTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI+L   D V+   ++   D         Y K  SA    + G   +     N +   G
Sbjct: 691 RGINLRPHDYVVGSGVLGSNDQVLVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKNG 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            ++      +    + I+ ++  G   R  + D   + RS  G+R   V   +++ +L  
Sbjct: 751 PLA---GVIVINSSKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVDNGSQVASLTI 807

Query: 844 V 844
           V
Sbjct: 808 V 808


>gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  675 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/854 (38%), Positives = 473/854 (55%), Gaps = 54/854 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  +   +K +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 32  EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   
Sbjct: 91  GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA+RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GI
Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HN+ EV  G    +++P+   + L+E     + GPDFPTGA ILGR GI+
Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG I +R V ++E+    R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD
Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIAD 329

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE+  R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G 
Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +  +V  + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L
Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +                           + + +VQ +AIL+++L +L  L    I++E 
Sbjct: 450 KE--------------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEY 483

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRE 536
           + L  +I E   IL S  R   +I +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV+++  GYVKR  +  YR+Q RGGKG  G  +R +D V  L  VSTH  +LFF++ G
Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFG 603

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G 
Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDY---GRAPYLVLATRGGL 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +   + 
Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGD 768
             GR + GV G+     D +++M +V          D  + +R    ++    R  +   
Sbjct: 721 PMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIK 780

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++   + + +    + E         +Q +L V   G   R++        R   G+ 
Sbjct: 781 VAKLVDDRGELAGGLVVRE---------DQEVLVVMASGKVVRSAVAGVPAKGRDTMGVI 831

Query: 829 ATDVSKINEIGALV 842
                K + I A+ 
Sbjct: 832 FAKPDKRDRIVAVT 845



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 97/253 (38%), Gaps = 19/253 (7%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR          R+  +   L + D +  V         +  +      R  +  +   
Sbjct: 402 VRRTAFRKRKAEERAHILRGLLKALDMLDEVIAT------IRRSASADVAREALKELLDI 455

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEIT 773
               +  +  + L +   + S  I    D   A   E    ++    QR +IS +  EI 
Sbjct: 456 DDVQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVISEELAEIV 515

Query: 774 SLKNDSS----VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +   D      + G   +   ++L  +E+ +++++  G+ KRT    +R   R GKG+R 
Sbjct: 516 AKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGGKGVRG 575

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---A 886
             +   + +  L     V+ +  ++  ++ G + R+   E+  A R  KG  + +     
Sbjct: 576 ATLRGDDVVEHL---LTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLAFQ 632

Query: 887 KDERVVSVERIRE 899
            DER+  ++ + +
Sbjct: 633 PDERIAQIQPLVD 645



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 103/274 (37%), Gaps = 13/274 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  ++      R   +V  +  G VK+ PL  Y   R    G   + +R+ D +    
Sbjct: 635 ERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTA--GLIAIKLREGDELVSAR 692

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    ++  S  G   +       +  P  R  + +  +     + + T+    ED  
Sbjct: 693 VVSPDDDLILISHKGQSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVEED-- 749

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                YV   T  G  +R  + ++   NR G   K+A  +D R E+       ++ ++L+
Sbjct: 750 ----GYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLV 805

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++      GR+++GV      K D+++++ +    + +           
Sbjct: 806 VMASGKVVRSAVA-GVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGP 864

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                     T+ + + ++  + +     +  ++
Sbjct: 865 DVPLDADIDPTDPVAAPEDALTQDAGEGADGGEQ 898


>gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  675 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/854 (38%), Positives = 472/854 (55%), Gaps = 54/854 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  +   +K +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 32  EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   
Sbjct: 91  GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA+RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GI
Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HN+ EV  G    +++P+   + L+E     + GPDFPTGA ILGR GI+
Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG I +R V ++E+    R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD
Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIAD 329

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE+  R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G 
Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +  +V  + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L
Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +                           + + +VQ +AIL+++L +L  L    I++E 
Sbjct: 450 KE--------------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEY 483

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRE 536
           + L  +I E   IL S  R   +I +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV+++  GYVKR  +  YR+Q RGGKG  G  +R +D V     VSTH  +LFF++ G
Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFG 603

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G 
Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDY---GRAPYLVLATRGGL 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +   + 
Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGD 768
             GR + GV G+     D +++M +V          D  + +R    ++    R  +   
Sbjct: 721 PMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIK 780

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++   + + +    + E         +Q +L V   G   R++        R   G+ 
Sbjct: 781 VAKLVDDRGELAGGLVVRE---------DQEVLVVMASGKVVRSAVAGVPAKGRDTMGVI 831

Query: 829 ATDVSKINEIGALV 842
                K + I A+ 
Sbjct: 832 FAKPDKRDRIVAVT 845



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 103/274 (37%), Gaps = 13/274 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  ++      R   +V  +  G VK+ PL  Y   R    G   + +R+ D +    
Sbjct: 635 ERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTA--GLIAIKLREGDELVSAR 692

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    ++  S  G   +       +  P  R  + +  +     + + T+    ED  
Sbjct: 693 VVSPDDDLILISHKGQSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVEED-- 749

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                YV   T  G  +R  + ++   NR G   K+A  +D R E+       ++ ++L+
Sbjct: 750 ----GYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLV 805

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++      GR+++GV      K D+++++ +    + +           
Sbjct: 806 VMASGKVVRSAVA-GVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGP 864

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                     T+ + + ++  + +     +  ++
Sbjct: 865 DVPLDADIDPTDPVAAPEDALTQDAGEGADGGEQ 898



 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + + ++ ++  G + R  +++ R  +R  KGV   +   D+ V
Sbjct: 542 EEEMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVV 584


>gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
          Length = 898

 Score =  675 bits (1740), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/854 (38%), Positives = 472/854 (55%), Gaps = 54/854 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  +   +K +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 32  EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   
Sbjct: 91  GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA+RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GI
Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HN+ EV  G    +++P+   + L+E     + GPDFPTGA ILGR GI+
Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG I +R V ++E+    R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD
Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIAD 329

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE+  R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G 
Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +  +V  + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L
Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +                           + + +VQ +AIL+++L +L  L    I++E 
Sbjct: 450 KE--------------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEY 483

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRE 536
           + L  +I E   IL S  R   +I +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV+++  GYVKR  +  YR+Q RGGKG  G  +R +D V     VSTH  +LFF++ G
Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFG 603

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G 
Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDY---GRAPYLVLATRGGL 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +   + 
Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGD 768
             GR + GV G+     D +++M +V          D  + +R    ++    R  +   
Sbjct: 721 PMGRATSGVTGMKFRDDDSLLTMDVVEEDGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIK 780

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++   + + +    + E         +Q +L V   G   R++        R   G+ 
Sbjct: 781 VAKLVDDRGELAGGLVVRE---------DQEVLVVMASGKVVRSAVAGVPAKGRDTMGVI 831

Query: 829 ATDVSKINEIGALV 842
                K + I A+ 
Sbjct: 832 FAKPDKRDRIVAVT 845



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 103/274 (37%), Gaps = 13/274 (4%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  ++      R   +V  +  G VK+ PL  Y   R    G   + +R+ D +    
Sbjct: 635 ERIAQIQPLVDYGRAPYLVLATRGGLVKKTPLLDYDTNRTA--GLIAIKLREGDELVSAR 692

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    ++  S  G   +       +  P  R  + +  +     + + T+    ED  
Sbjct: 693 VVSPDDDLILISHKGQSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVEED-- 749

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
                YV   T  G  +R  + ++   NR G   K+A  +D R E+       ++ ++L+
Sbjct: 750 ----GYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLV 805

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++      GR+++GV      K D+++++ +    + +           
Sbjct: 806 VMASGKVVRSAVA-GVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGP 864

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                     T+ + + ++  + +     +  ++
Sbjct: 865 DVPLDADIDPTDPVAAPEDALTQDAGEGADGGEQ 898



 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + + ++ ++  G + R  +++ R  +R  KGV   +   D+ V
Sbjct: 542 EEEMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVV 584


>gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
 gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 880

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/850 (38%), Positives = 479/850 (56%), Gaps = 45/850 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +    E     +  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MVEDV----EVTSDRVEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + + KCAR+ G+VMG YHPHG++AIYDAL R+ Q+W++R  L  GQGNFGS 
Sbjct: 57  YDGGYRPERSFNKCARVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE ++   A  ++ D+ +DTVDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 117 GNDGAAAPRYTETKMAPLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV DG    + NPD+D     + L++ ++GPDFP+GA ILG  G
Sbjct: 177 GIAVGMATNIPPHNLREVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQILGHKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI  R V  +E+    R  +VVTE+PYQVN   +  KIA+LV++ ++  I
Sbjct: 237 IEQAYRTGRGSITQRAVVSVEEIHN-RTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGI 295

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE+  R G R+VI LKR A   V+LN LY++T LQ  FS NM+AL    P   +L 
Sbjct: 296 ADMRDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +  +V+ + +V+VRRT+Y L +A++ AH+L+GL  A+  LDEV+ +IR SP  E AR 
Sbjct: 356 AFVHHWVSHQMDVIVRRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARN 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E Q +AIL ++L RL  L R  I++
Sbjct: 416 GLME--------------------------LLGIDEAQAQAILNMQLRRLAALERQKIQD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534
               L   I E  +I++S +R  GII +EL  + +     RRT ++ G   D+  ED I 
Sbjct: 450 RHAELQRLIAEYEEIIASEARQRGIISEELAEIVERYGDDRRTEVLYGFDGDVSMEDLIP 509

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           ++ +VVT++  GYVKR     YRAQ RGG+G  G  +R +D V   F+ +TH  +LFF++
Sbjct: 510 QQQVVVTITRDGYVKRTRADEYRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTT 569

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG VY+ K +        A+G+ + N++     ERI  +M   E  S  +  Y+V AT++
Sbjct: 570 LGRVYRVKAYEFVEAGRDAKGQHVANLMEFQPEERIAKVM---ELHSYQDAPYLVLATRN 626

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++++L+D+     +G IA+ L   DE++S      ++DI+L ++ GQ +RF      
Sbjct: 627 GLVKKSRLTDYDTNRSAGVIAINLRDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDA 686

Query: 715 VF-AGRNSVGVRGISLAKGDQVISMAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEI 772
           +   GR + GV G+    GD+++S  +V             Y K  + Q   + G     
Sbjct: 687 LRPMGRATSGVTGMKFRSGDELLSANVVSDDSHVFVVTEGGYAKRTAVQEYRVQGRGGLG 746

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             +   + V G +       +  +   +L V E G   R++  +     R   G+     
Sbjct: 747 IKVAKLAEVRGGLVG---GLIVGENDEVLVVMESGKVVRSTVSEVPARGRDTMGVIFAKP 803

Query: 833 SKINEIGALV 842
              + I  + 
Sbjct: 804 GPNDTIVGVA 813


>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
 gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
          Length = 880

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/919 (37%), Positives = 512/919 (55%), Gaps = 82/919 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
                  V +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K +
Sbjct: 18  HNDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPH 77

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSV 120
            KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ            +SLR  LI G GNFGS+
Sbjct: 78  RKCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSL 137

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           DGDP AA RYTECRL   +   LL DL  DTVDF PN+DGS +EPVV+ AR PNVL+NG 
Sbjct: 138 DGDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGA 197

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EVVD   A+I NP+  ++ LME + GPDFPTG  ILG +GI +
Sbjct: 198 SGIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIAD 257

Query: 240 AYATGRGSIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           A+ TGRG+I +RG +  E+  G   R  IV+TEIPY  NK+ ++ KIAELV  K +  ++
Sbjct: 258 AFRTGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVS 317

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDESDR G R+V+ELKRGA A V+LN LY++T+LQS FS N+V +   +PE F++  +
Sbjct: 318 DIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRL 377

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ FR  VV RR +  L +A  R H+L G    +  LD+VV++++ + +  +A + L
Sbjct: 378 LEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQAL 437

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +                             LS  Q  A+L + L R+T L R+ I  E 
Sbjct: 438 QK--------------------------DFGLSAAQAEALLGMPLRRITSLERNKILEEH 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVRE 536
           NSL  +  +  ++LS++ R+L ++++E L++K+E  +PRRT + E G   +++ D I   
Sbjct: 472 NSLLAQASDLRELLSNKQRVLKVVEKEALALKNEFGSPRRTVLEEYGDGRIDNIDVIPNN 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +  +T+S  GY+KR+    + AQRRG  G+SG  M+  D + D F+   H  VL FS  G
Sbjct: 532 ESFLTLSEKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERG 591

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  + +++P  S  + G  +I +LS+  GERIT+I P  E      + ++V  T  G 
Sbjct: 592 VVYSFRAYQVPECSRTSTGVPIIQVLSIPAGERITSIFPLSEFRE---DHFLVMLTSKGY 648

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R +L  F  I   G +A++L   DE+  V   TQ + I + ++ G  ++ P    R  
Sbjct: 649 IKRTELPAFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSM 707

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R + G+R + + +GD++ ++ IV       +       H+   R   S          
Sbjct: 708 -RRGARGLRAMRIKEGDEIAAIDIV-PGSVWKESPTLLCTHVLCNRSKAS---------- 755

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              +  ++L VSE G  KR     F     +  G+        +
Sbjct: 756 -------------------EAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGD 796

Query: 837 EIGAL-VAVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + ++ V    V+D   N++I++ +  G   R  V EI I SR  +G+ +     D++V 
Sbjct: 797 RLASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVK 856

Query: 893 SVERIRESEIV--DEAEST 909
           SV  +  S+    DE  S 
Sbjct: 857 SVSVVAASDSPAHDEPPSD 875


>gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
 gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
          Length = 821

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/901 (40%), Positives = 516/901 (57%), Gaps = 91/901 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +  + +   + I  V I DEM+ SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M
Sbjct: 1   MSSDVPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + I GE MG YHPHG++AIYDALARMAQD+SLR  L++GQGNFGSV
Sbjct: 61  EEMGVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+   A  LL D+ KDTVDF  NYD    EPVVL AR PN+LVNG  
Sbjct: 121 DGDPPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME------IIRGPDFPTGAVILGR 234
           GIAVGM+TNIP HNLGEV+D  + +IDNPD  +  L++       I+GPDFPTGA I+ R
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIVNR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI +AY  GRG + +R    IE+T    ++IVVTE+PYQ NKA  +E+IAE V+E +I 
Sbjct: 241 EGIWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I D+RDESDR G RVVIE KRG++ADV+ NQL  +  L++ FS+  +AL   +P    L
Sbjct: 301 GIRDIRDESDRDGVRVVIECKRGSNADVVKNQLLEH-HLENTFSIISLALVDDQPRVLNL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+AFV  R EVV RR+++ L +A+DRAH+L G  +A+ N+D+VV  I+ S + + A 
Sbjct: 360 KELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRDAAM 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L +                             LSE Q   I+ ++L  LT +   +I 
Sbjct: 420 AALRK--------------------------AYDLSEDQAEHIVRMQLGSLTSMEAGEIE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E   +  EI+    IL+  S LLG+IK EL  +K E    R+T ++E    +  ED I 
Sbjct: 454 TEYEDVQAEIERLETILNDESELLGVIKDELRDIKAEYADERQTDVIEDAGSVTREDLIA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E++VV V+   YVKR+PLS +  Q RGGKG  G   ++ D V+ +F  STH  +L F++
Sbjct: 514 EEEVVVVVTEEDYVKRMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTN 573

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ KV+ LP     ARG + +N+L LN GE IT ++   +     +  Y+  AT+ 
Sbjct: 574 QGQVYRLKVFELPEMGRTARGTSAVNVLDLNDGEEITAVVNTDD----IDEGYLAMATEA 629

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V+R  +S+F  ++  G  A+ L+  D ++ VE    + D+L+ TK G  +RF  S  R
Sbjct: 630 GYVKRTAVSEFENVHAGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDAR 689

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R++ GV GI L   D+   +      D                             
Sbjct: 690 PMG-RSARGVNGIKLEGDDRATGLVAASSDD----------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 ++ +LTV++ G+GKRT   ++R  +R GKG+      +
Sbjct: 720 ----------------------DRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDE 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G + ++  V+++D ++++S+ G ++R  V+EI    R TKGVV+ S   D+R+  +
Sbjct: 758 RN--GPVCSLDAVSEDDGLVIMSESGQIMRTTVDEISTVGRNTKGVVVMSVDDDDRIAGI 815

Query: 895 E 895
           +
Sbjct: 816 D 816



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 60/253 (23%)

Query: 656 NVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            V+R  LS+F   +R GK  I  +    D + +V T +  + +L  T  GQ  R  +  +
Sbjct: 526 YVKRMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFEL 585

Query: 714 RVF--AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                  R +  V  + L  G+++   A+V   D D                        
Sbjct: 586 PEMGRTARGTSAVNVLDLNDGEEI--TAVVNTDDID------------------------ 619

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                    E ++   +E G+ KRT+  +F   +  G  IRA  
Sbjct: 620 -------------------------EGYLAMATEAGYVKRTAVSEFENVHAGG--IRAVS 652

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +   +   +LV V   + +  +++ +  G  IR   ++ R   R+ +GV       D+R 
Sbjct: 653 LEDDD---SLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPMGRSARGVNGIKLEGDDRA 709

Query: 892 VSVERIRESEIVD 904
             +      +  D
Sbjct: 710 TGLVAASSDDDRD 722



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 97/221 (43%), Gaps = 13/221 (5%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
             +        + E  +   +  GYVKR  +S +     G  G   V + D+D + D+ +
Sbjct: 607 EEITAVVNTDDIDEGYLAMATEAGYVKRTAVSEFENVHAG--GIRAVSLEDDDSLVDVEV 664

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
                 +L  +  G   +            ARG   +N + L   +R T ++    D   
Sbjct: 665 TDGDGDLLVGTKHGMTIRFDESDARPMGRSARG---VNGIKLEGDDRATGLVAASSD--- 718

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLT 699
            ++  ++  TK+G  +R  LS++ + +R GK  + + + +    + S++  ++++ +++ 
Sbjct: 719 -DDRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDERNGPVCSLDAVSEDDGLVIM 777

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           ++ GQ +R  +  I     RN+ GV  +S+   D++  + +
Sbjct: 778 SESGQIMRTTVDEISTVG-RNTKGVVVMSVDDDDRIAGIDV 817


>gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/843 (39%), Positives = 475/843 (56%), Gaps = 53/843 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ + K
Sbjct: 27  DRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNK 86

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   D  AA RYTE 
Sbjct: 87  CARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTET 146

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++   A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 147 KMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPH 206

Query: 194 NLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV DG    + NP        + L+  ++GPDFPTGA ILG  GI++AY TGRGS+ 
Sbjct: 207 NLREVADGVQWYLANPGASREELLEELLLRVKGPDFPTGATILGHKGIEDAYRTGRGSVT 266

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R V ++E+    R  +VVTE+PYQ N   +  KIAELV++ +I  IADLRDE+  R G 
Sbjct: 267 MRAVVNVEELQ-GRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQ 325

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQS FS NM+A+    P   +L   ++ +V  + +V
Sbjct: 326 RLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLSLDAFIRHWVTHQMDV 385

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  LM+         
Sbjct: 386 IARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLME--------- 436

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + E+Q RAIL+++L RL  L R  I++    L   I E  
Sbjct: 437 -----------------LLDIDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYN 479

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
           +IL S  R   II  EL  + D+    RRTRI+ G   DM  ED I  E+MVVT++  GY
Sbjct: 480 EILGSEQRQREIISTELGEIVDKHGDDRRTRILMGFDGDMSMEDLIPEEEMVVTITRGGY 539

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG VY+ K + L 
Sbjct: 540 VKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELM 599

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G+ + N+++    E I  ++   + + +    Y+V ATK G V++ +L D+  
Sbjct: 600 EAGRDAKGQHVANLMAFQPDEHIAQVLDLKDYQQA---PYLVLATKRGLVKKTRLEDYDT 656

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRG 726
              +G IA+ L   DE++S +  ++ +D+LL ++ GQ +RF  +   +   GR + GV G
Sbjct: 657 NRSAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTATEDALRPMGRATSGVTG 716

Query: 727 ISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +   + D++++  +V          +  Y +R    ++    R  +     ++   + D 
Sbjct: 717 MKFREDDELLAANVVTDGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVAKLAEERGDL 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                + EE           +L V E G   R+S        R   G+      K + I 
Sbjct: 777 VGALIVQEE---------DEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRII 827

Query: 840 ALV 842
            + 
Sbjct: 828 EVA 830



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 107/283 (37%), Gaps = 18/283 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D     +   +V  +  G VK+  L  Y   R    G   + +RD D +    
Sbjct: 620 EHIAQVLDLKDYQQAPYLVLATKRGLVKKTRLEDYDTNRSA--GVIAINLRDGDELVSAQ 677

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    +L  S  G   +       +  P  R  + +  +   + + +           
Sbjct: 678 LVSETDDLLLVSRKGQSIRFTATEDAL-RPMGRATSGVTGMKFREDDELLAANVVT---- 732

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
             +  +V   T+ G  +R  + ++    R G   K+A   + R +++      +E+++L+
Sbjct: 733 --DGSFVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVAKLAEERGDLVGALIVQEEDEVLV 790

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI-----VLHADADYDERIC 753
             + G+ VR  ++      GR+++GV      K D++I +A      +   ++  D+   
Sbjct: 791 VMEGGKVVRSSVA-GVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGIEGEESAEDDVTL 849

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                SA         +E  +++++ +       E   E+  +
Sbjct: 850 AEDGGSAAEAAAPAVADESPAVESEDASGDAEPNEDYTEVTSE 892


>gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
 gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
          Length = 871

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/897 (36%), Positives = 496/897 (55%), Gaps = 90/897 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+E   +    +  E++ SYL YA++VI+GRA+PD RDGLKPV RR+L+GM+ +G+  N
Sbjct: 2   EEQEMGRVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K AR+ GEVMGKYHPHG+A+IYD + R+AQ W+LR  L++GQGNFGSVDGD  AA 
Sbjct: 62  QAYKKSARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R  +    +L D+ +DTVD+ PN+D S +EP+ L +  PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARFAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNLGEV+D    +ID+P+ +L  LM  + GPDFPTG +I+GR GI +AY TGRG I
Sbjct: 182 NMPPHNLGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++RG   +E+    R  +V+TEIPY VNK  ++E IA+ V+E  I  ++DLRDESDRQG 
Sbjct: 242 IVRGRCVVEEGKR-RTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGL 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V++L R    +++  QLY  T +QS F V  + L   +P    L  +L+ F+ +R +V
Sbjct: 301 RIVLDLNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KA++R H++ GL  A+  +DEV+RIIR +   E A   L ++        
Sbjct: 361 VRRRTAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  SE Q +AIL++RL RLTGL RD +  E+  L  +I    
Sbjct: 413 ------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIARYQ 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLG 546
           +IL+    L G+I+ EL  ++ +    RRT I   +    D  ED +  E++V+T+S  G
Sbjct: 455 EILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLSKDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y++R  L  Y  Q RGGKGR G  + +ED V  + + +TH  VL F+S G V+  K   +
Sbjct: 515 YLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMV 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +G+ +   +SL++GE +  I+    D    N   VV  T+ G  +R   S+  
Sbjct: 575 PETK-SGKGRKVEQFISLSEGETVVEILGRFPD----NCSTVVLITRRGIAKRMDKSELQ 629

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + R+G+  M LD  D+I  +      +D+ L + +G+ +R     IR    R++ GV+ 
Sbjct: 630 NLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTMG-RSARGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L K D++IS  ++                                             
Sbjct: 689 MKLGKDDEIISCEVI--------------------------------------------- 703

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  IL VS++G GK TS  +F + +R+  G RA  +   +  G L     
Sbjct: 704 --------AGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRI--GDRTGRLAVANT 753

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  +D++ L++  G +IR+ V+ I    R   G ++      + V +V  I + ++V
Sbjct: 754 VFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDLV 810


>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/910 (38%), Positives = 522/910 (57%), Gaps = 79/910 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 97  DESRIVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216

Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H + G+ + + N+DEV+++I+ + +  +A   L           
Sbjct: 457 VERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQSE-------- 508

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AILE+ L RLT L R  + +E +SL  +I +  
Sbjct: 509 ------------------YGLSEKQAEAILEITLRRLTTLERKKVTDESSSLTEQITKLE 550

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ +S  GY
Sbjct: 551 QLLSTRANILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAISEKGY 610

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK++    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 611 VKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAE---DRYLLMLTVNGCIKKVSLKLFSG 727

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G  V      +R  + RN+ GV  +
Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLS-RNTKGVTAM 786

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+  +     E                                   SE
Sbjct: 787 RLKNEDKIASMDIIPASLRKDMEEK---------------------------------SE 813

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+     ++ +    L AVF V
Sbjct: 814 DASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDR---LAAVFVV 870

Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                     ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   I  
Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930

Query: 900 SEIVDEAEST 909
           ++  +E E T
Sbjct: 931 AD-EEETEGT 939



 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 88/254 (34%), Gaps = 11/254 (4%)

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L D     R   +    DS D +  ++    E  ++  ++ G   +       +   R
Sbjct: 568 IELKDRFSSPRRS-MLEDSDSGD-LEDIDVIPNEEMLMAISEKGYVKKMKADTFNL-QHR 624

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLK 776
            ++G     L   D +    +    D      D  I Y                      
Sbjct: 625 GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQI 684

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              S    ++         +++++L ++  G  K+ S   F  S     GI A  ++  +
Sbjct: 685 LSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLF--SGIRSTGIIAIQLNSGD 742

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           E   L  V   + +D + + S  G ++    + +R  SR TKGV       ++++ S++ 
Sbjct: 743 E---LKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDI 799

Query: 897 IRESEIVDEAESTE 910
           I  S   D  E +E
Sbjct: 800 IPASLRKDMEEKSE 813


>gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 774

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/852 (40%), Positives = 506/852 (59%), Gaps = 85/852 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS
Sbjct: 2   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG 
Sbjct: 62  MDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGA 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  
Sbjct: 122 TGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHK 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+GSIV+R  + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +
Sbjct: 182 AYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAV 241

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL 
Sbjct: 242 RDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILD 301

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM 
Sbjct: 302 AYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMS 361

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            LSE QT+AIL++RL RLTGL RD I++E + 
Sbjct: 362 K--------------------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDD 395

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDM 538
           L   I +  DIL+   R+  IIK EL  VK +    RRT + V  +L +EDED I   D+
Sbjct: 396 LLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDV 455

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G V
Sbjct: 456 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRV 515

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P     A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+
Sbjct: 516 YRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVK 573

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + 
Sbjct: 574 RTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS- 632

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G++L +GD V+  +++   D                                 
Sbjct: 633 RIATGVKGVNLREGDTVVGASLITDQD--------------------------------- 659

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             E  ++T    G  KRT + ++    R GKG++   +++ N  
Sbjct: 660 ------------------EVLVITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN-- 697

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L  +  V  ++ +++++D G +IR  +  I    RAT GV +    +D ++V+   + 
Sbjct: 698 GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVA 757

Query: 899 ESEIVDEAESTE 910
            +E  +     E
Sbjct: 758 VAEKEEVGTENE 769


>gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
 gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
          Length = 803

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/887 (39%), Positives = 531/887 (59%), Gaps = 91/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I DE+ +SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G+  N    K A
Sbjct: 5   LINRPIEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMAT+IP HNL
Sbjct: 125 TRLAEEMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  V +ID+P+  ++ LM+ I+GPDFPTG +++  + +KN Y  GRG IV+RG  H
Sbjct: 185 SETVDALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNGSELKNVYEEGRGRIVVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    + +IV+TEIPY V+KA ++E+IA+LV++   + + ++RDESD++G RVVIE+ 
Sbjct: 245 VEEGKRLK-RIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +  + D+I+N LY+ T+LQ  F+V M+ ++   +P    L G+L+AF+  R EV+ RR +
Sbjct: 304 KDTNEDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAE 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   K   RAHV+ GL  A   +  VV I+R S + E+AR  LM+               
Sbjct: 364 YEYEKFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ +SE Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEISEEQAKAILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K+    PRRT I +  L  + E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVREIMKKEFLYLKERYGDPRRTEITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGGKG +   + ++D V  + +    +S LF ++ G  Y  K +++       R
Sbjct: 518 SYRSQRRGGKGITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GK 673
           GK +   L+L   ERI  ++P            +V  TK G ++R  L +F     + G 
Sbjct: 578 GKHISAFLNLEDTERIVALVPLN-----GKGKDLVIVTKSGKIKRTSLEEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A++++  DEI+S     +++  +++ TKLG  +RFP+S +R    RN+ GV+ I L  G
Sbjct: 633 RAIRIEPGDEIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRMG-RNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +                                                    
Sbjct: 692 DEVVSMDV---------------------------------------------------- 699

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +E  ILTV+EKGFGKRT    +R+  R G G+R  ++S +N+ G +VAV  V  +++
Sbjct: 700 VPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLR--NISDVNKTGHVVAVRYVKGDEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR+PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 758 IVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 803



 Score = 97.7 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 95/239 (39%), Gaps = 13/239 (5%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+     +L    E    E   +E+ ++  +  G     P+++ R    R   G+   
Sbjct: 478 PRRTEITDEELRYDVE----ELIVEEDVVITLSHKGYLKSTPLNSYRS-QRRGGKGITVS 532

Query: 728 SLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L++ D+V  + +  +  +  +         +   +   +G       +    ++E    
Sbjct: 533 KLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNLEDTER 592

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
                 L  K + ++ V++ G  KRTS  +F    SNR    +RA  +   +EI  + A 
Sbjct: 593 IVALVPLNGKGKDLVIVTKSGKIKRTSLEEFENATSNRG---VRAIRIEPGDEI--VSAR 647

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              ++ + +++ +  G +IR PV+++R   R   GV        + VVS++ +   E  
Sbjct: 648 VSTSEKETLVVATKLGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGE 706


>gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1]
 gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1]
          Length = 889

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/881 (38%), Positives = 492/881 (55%), Gaps = 62/881 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E ++   +     +  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M  
Sbjct: 15  EDVVLEGDVLTDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFD 74

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ + KCAR+ G+VMG YHPHG+ AIYDAL R+ QDW++R  L  GQGNFGS   
Sbjct: 75  GGYRPDRSFNKCARVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRYPLALGQGNFGSPGN 134

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE ++ + A  ++ D+ ++TVDF+ NYDG  QEP +L AR+PN+LVNG  GI
Sbjct: 135 DGAAAPRYTETKMAQLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGI 194

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HNL EV +G    +DNP        +AL+  I+GPDFPTGA ILG  GI+
Sbjct: 195 AVGMATNIPPHNLREVAEGVQWALDNPTATREELLEALLLRIKGPDFPTGATILGHKGIE 254

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRGSI +R V ++E+    R  +VVTE+PYQ N   +  KIAELV++ +I  IAD
Sbjct: 255 DAYRTGRGSITMRAVVNVEELQ-GRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIAD 313

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           LRDE+  R G R+VI LKR A A V+LN LY++T LQ  FS NM+A+    P   +L   
Sbjct: 314 LRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLAIVDGVPRTLSLDAF 373

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++ +VA + +V+ RRT+Y L KA + AH+L  L  A+  LDEV+ +IR S   E AR  L
Sbjct: 374 IRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAAREGL 433

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                           + + E+Q RAIL+++L RL  L R  I++  
Sbjct: 434 ME--------------------------LLEIDELQARAILDMQLRRLAALERQKIQDRH 467

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRE 536
           + L   I+E   IL+S  R   II +EL  +  +    RRT I+ G   DM  ED I  E
Sbjct: 468 SELEAMIQEYNAILASEERQRQIISEELAEIVAKHGDDRRTHILMGFDGDMSMEDLIPEE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVVT++  GYVKR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF++LG
Sbjct: 528 EMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLG 587

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + L      A+G+ + N+L+    E I  ++   + + +    Y+V ATK+G 
Sbjct: 588 RVYRAKAYELAEAGRDAKGQHVANLLAFQPDEHIAQVLDLRDYQQA---PYLVLATKNGL 644

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++ +L D+     +G IA+ L   DE++S +  ++ +D+LL ++ GQ +RF  +   + 
Sbjct: 645 VKKTRLEDYDTNRTAGVIAINLRDEDELVSAQLVSETDDLLLVSRKGQSIRFTATDDALR 704

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGD 768
             GR + GV G+   + D++++  +V          +  Y +R    ++    R  +   
Sbjct: 705 PMGRATSGVTGMKFREDDELLAADVVQDGSFVFIVTEGGYAKRTAVDEYRLQGRGGLGIK 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++   + D      + EE           +L V E G   R++        R   G+ 
Sbjct: 765 VAKLAEDRGDLVGALIVQEE---------DEVLVVMEGGKVVRSAVTGVPAKGRDTMGVI 815

Query: 829 ATDVSKINEIGALV----AVFPVND-----NDQIILVSDKG 860
                K + I  +         V +     +D + L ++ G
Sbjct: 816 FAKPDKNDRIIEVARNSERGLEVEESEDGLDDDVTLAANDG 856



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 108/281 (38%), Gaps = 20/281 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D     +   +V  +  G VK+  L  Y   R    G   + +RDED +    
Sbjct: 619 EHIAQVLDLRDYQQAPYLVLATKNGLVKKTRLEDYDTNRTA--GVIAINLRDEDELVSAQ 676

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +VS    +L  S  G   +       +  P  R  + +  +   + + +           
Sbjct: 677 LVSETDDLLLVSRKGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVV----- 730

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILL 698
             +  +V   T+ G  +R  + ++    R G   K+A   + R +++      +E+++L+
Sbjct: 731 -QDGSFVFIVTEGGYAKRTAVDEYRLQGRGGLGIKVAKLAEDRGDLVGALIVQEEDEVLV 789

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-------IVLHADADYDER 751
             + G+ VR  ++      GR+++GV      K D++I +A        V  ++   D+ 
Sbjct: 790 VMEGGKVVRSAVT-GVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEVEESEDGLDDD 848

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +    +  A    ++ +TE     + ++  E N       E
Sbjct: 849 VTLAANDGASEATVTAETENDADPEFETGAELNEDNTGGNE 889


>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
 gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
          Length = 824

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/843 (42%), Positives = 521/843 (61%), Gaps = 48/843 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  +  V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  +K
Sbjct: 2   DINKDKLLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 62  PFKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PNYDG  +EP V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNLGE +D   A++DNPDI +  LM+  I GPDFPTG +ILGR GI+ AY TGRGSI
Sbjct: 182 IPPHNLGETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMILGRAGIRQAYETGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR   H+E+    + +IVVTE+PYQVNKA ++ KIA+LVREK+I  I  L DES+R+G 
Sbjct: 242 MIRCKHHLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL++    DV+LNQL+R TSLQ+ F VNM+AL+   P++  +  +L  ++  + +V
Sbjct: 302 RIVIELRKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRSPKQMGIKELLGHYIDHQIDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            VRRTKY L KA DRAH+L GL IA+ ++DE++ IIR S N   AR  LM+         
Sbjct: 362 TVRRTKYDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLMEN-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q  AILE+RL RLTGL RD I NE   L   I +  
Sbjct: 414 ------------------FELSEIQANAILEMRLRRLTGLERDKIENEYQELLALIIDLK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++  R+L II+ EL  VK++    RRT I +   DM+DED I  ED+V+T++  GY+
Sbjct: 456 DILANHDRVLQIIRDELTEVKNKYGDERRTEISDADYDMQDEDLIPVEDIVITMTTNGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   Y  Q RGG+G  G+ + ++D V  L  +STH  +L F+++G VY+ K +++P 
Sbjct: 516 KRMPTDTYHTQNRGGRGIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPN 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  ++N+L+L++ E++  ++P   D  +    Y++F TK+G V+R   ++F  I
Sbjct: 576 ASRTAKGLPVVNLLNLDKDEKVKALVPMKVDHEAE---YLMFVTKNGLVKRVPSAEFASI 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GKIA+ L   DE++ V+  T +++I++    G+ VRF    +R    R++ GV+G +
Sbjct: 633 RQNGKIAITLREGDELVGVKETTGDDEIIIAGSNGKAVRFHEDGVRPMG-RSASGVKGFN 691

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +  G  V+ MA       ++  ++  Y +R    ++    R      T  IT    D   
Sbjct: 692 V-DGAVVVGMATSRDGTHLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITPKTGDLVS 750

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              ++ +            + V+  G   R       I +R+ +G++  +V++   +  +
Sbjct: 751 VRAVNGDEDA---------MIVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKV 801

Query: 842 VAV 844
             V
Sbjct: 802 AIV 804


>gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 831

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/832 (40%), Positives = 511/832 (61%), Gaps = 33/832 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K 
Sbjct: 4   RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE +
Sbjct: 64  ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 124 MSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GSI++R   
Sbjct: 184 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSIIVRAKV 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G R+VI++
Sbjct: 244 EIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDV 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EEVV RRT+
Sbjct: 304 RRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEVVRRRTE 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM                
Sbjct: 364 FDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMD--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q +AIL+LRL RLTGL R+ I +E   L   I +  DIL+ +
Sbjct: 409 -----------DYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQ 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            R+  II  EL+ ++++    RRT + V  + ++EDED I  ED++VT++H GYVKR+P+
Sbjct: 458 ERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPV 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +P     A
Sbjct: 518 DEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAA 577

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F  I  +G 
Sbjct: 578 QGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTLVTEFKNIRSNGI 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE+++V     + +++L T LG    F +SA+R    R++ GVRG  L  GD
Sbjct: 637 KAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSMG-RSAAGVRGARLRDGD 695

Query: 734 QVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +I  A +   D         Y K   A    I G         N +   G ++      
Sbjct: 696 YLIGAAPLNEDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKNGPLA---GLT 752

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
               ++ ++ V++KG   R        + RS  G+    +   + +  +  V
Sbjct: 753 TVQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKV 804


>gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
 gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/853 (38%), Positives = 493/853 (57%), Gaps = 37/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+II       K +    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEENIIMVPGSGTK-VIERDVKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +    Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPQHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ K A  +L D+ KDT+D+ PN+D + +EP VL +R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV G  A++DNPDIDL  LME ++GPDFPTG +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + I +    R +I++TEIPY VNK  ++E IA+LV++KRI  I+DL 
Sbjct: 240 YATGRGKITLRGRAEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLN 299

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE S R G ++VIE+K+ A+  V+LNQLYRYT LQ    V M+AL+   P+  +L  +++
Sbjct: 300 DESSSRTGMKIVIEIKKDANPQVVLNQLYRYTQLQDTVGVIMLALDDGVPKIMSLKTVME 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELM 418
            ++ F+ EV+ RRT + L KA++R H+L GL  AV  +DE++  IR        AR+ +M
Sbjct: 360 RYIDFQMEVIRRRTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAVM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                           E+Q  AI++L+L RL GL    I  EL 
Sbjct: 420 DN--------------------------FGFDELQADAIVKLQLGRLAGLEILKIEQELG 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I +  DILS+   +  I+K +L ++ D+    RRT I     +++ ED I  E  
Sbjct: 454 ELREAIADYKDILSNDEHVKRIVKTDLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETC 513

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           + T++H GY+KR  L  Y+AQ RGG+G  G+  +D+DF  +LF+ STH  +LF +  G V
Sbjct: 514 IFTLTHEGYIKRTTLDTYQAQNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRV 573

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K +++P GS  A+G  ++N+L L +GE++T ++     ++  +N Y+   T+ G ++
Sbjct: 574 YRLKGYQVPEGSRTAKGSHIVNLLQLQEGEKVTLMLQQSA-KADEDNTYLTMVTRQGLIK 632

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  LS F  I ++G IA+ L+  D ++        ++I++ T  G  + F  S  R    
Sbjct: 633 RTPLSQFRNIRKAGLIAIGLNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAMG- 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R   GVR I L +GD VI   +                    + R    D   IT     
Sbjct: 692 RTGHGVRVIRLREGDYVIGAGVCRPG------ATVLTITEDGKGRRSRVDDYRITKRGGL 745

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                        ++  +   ++ +S  G   R  + D  + +R G G+R   + + +++
Sbjct: 746 GIRNYAKGGVAGIKIVDETDDLILISANGILIRLHASDINVQSRYGSGVRVMRLGEGDKV 805

Query: 839 GALVAVFPVNDND 851
             +  V   N+ +
Sbjct: 806 AMVARVDRDNEAE 818



 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           + +    +R++  D + +     D    S+E    E   ++L  +E  I T++ +G+ KR
Sbjct: 466 LSNDEHVKRIVKTDLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETCIFTLTHEGYIKR 525

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T+   ++  NR G+G++       +    L   F  + +D ++ ++D+G + R+   ++ 
Sbjct: 526 TTLDTYQAQNRGGRGVQGMTQKDDDFTEEL---FVGSTHDYMLFMTDQGRVYRLKGYQVP 582

Query: 872 IASRATKG---VVIFSTAKDERVV 892
             SR  KG   V +    + E+V 
Sbjct: 583 EGSRTAKGSHIVNLLQLQEGEKVT 606



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 95/258 (36%), Gaps = 20/258 (7%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +  V+  G +KR PLS +R  R+   G   + + + D +    +      ++  +
Sbjct: 617 EDNTYLTMVTRQGLIKRTPLSQFRNIRKA--GLIAIGLNEGDSLVWSHLTGGGDEIIVAT 674

Query: 594 SLGFVYKEKVWRLPIGSPQARGK--ALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             G               +A G+    + ++ L +G+ +                 V+  
Sbjct: 675 HDG-----AAIHFTESGARAMGRTGHGVRVIRLREGDYVIGAGVCR------PGATVLTI 723

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G  RR+++ D+    R G           +  ++   + +D++L +  G  +R   S
Sbjct: 724 TEDGKGRRSRVDDYRITKRGGLGIRNYAKG-GVAGIKIVDETDDLILISANGILIRLHAS 782

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            I V + R   GVR + L +GD+V   A+V   D D +     ++  +      S +   
Sbjct: 783 DINVQS-RYGSGVRVMRLGEGDKV---AMVARVDRDNEAETAKVEADAGDESEPSAEELA 838

Query: 772 ITSLKNDSSVEGNISEER 789
                  +    ++ ++ 
Sbjct: 839 AIEAAERADEAADVPDDE 856


>gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
 gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
          Length = 820

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/848 (41%), Positives = 525/848 (61%), Gaps = 41/848 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE+GI  V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM  +G      Y
Sbjct: 2   EERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ DL +DT+DF PNYDG  QEP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGEV+D  +AV  NPDI +  LME  I+GPDFPTG  ILG++ IK AY TG G IV+
Sbjct: 182 PHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYILGKSAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++ I+VTE+PY VNKA M+EK+++LVR+K+I  I ++RDES+R G RV
Sbjct: 242 RAKTEIE-EKGNKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ TSLQ+ F  N +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMISLYLEHQEEVIR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA DRAH+L GL  A+  +D ++ +IR S   +  +  LM+           
Sbjct: 361 RRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEE---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +S+ Q +AI E++L RL GL R  I ++LN L   I +  DI
Sbjct: 411 ----------------FNMSDKQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R RLL II  EL  +KD+    RRT I++G  D+EDED I  ED+++++++ GY+KR
Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y++Q RGG+G  G+   ++D V+ L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 515 MPVDTYKSQNRGGRGIKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L L++ E I +++     +   N N Y+ F TK G V+R  +++F  I 
Sbjct: 575 RSAKGLPVVNLLDLDKEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++ V+  +  + IL+    G+ VRF  S +R    R S GV+GI++
Sbjct: 635 QSGKIAICLKDNDQLVQVKLTSGNDQILIAASNGKLVRFEESNVRPMG-RISSGVKGINV 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +V+ M        D + +   +       ++   +   +++         + +E  
Sbjct: 694 -DGSEVVGMT------TDKEGKYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERN 746

Query: 790 CQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            + + L+    ++ +L +++ G   R        + R+ +G+R   V++ N++ ++  V 
Sbjct: 747 GKIVALRAVNGDEDLLIITDDGIMIRLPMEQVTTAGRATQGVRLIKVNENNKVSSVEVVE 806

Query: 846 PVNDNDQI 853
              + D +
Sbjct: 807 KAVEQDDV 814


>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
 gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
          Length = 859

 Score =  672 bits (1733), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/842 (40%), Positives = 511/842 (60%), Gaps = 32/842 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++      I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKEQFPQREISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH ++ D+ KDTVDF PNYDG  +EP VL AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARMSKIAHEMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     ++ N D   + LME + GPDFPTG +++G++GI+ AY TG+G+I+
Sbjct: 183 IPTHNLSEVIGAIKILMQNADATTNELMEALPGPDFPTGGIVIGKSGIRKAYETGKGTII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  S  +E+I+V EIPY VNKA ++E+IAEL R+KR+  I  +RDES R+G R
Sbjct: 243 VRAKLDIETLSSGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE ++ ASA VI+N LY+YT LQ+ F +NMVA+    P   +L  IL+ ++  +EEV+
Sbjct: 303 VVIECRKDASASVIVNNLYKYTQLQTNFGINMVAIVNGVPRTLSLKEILQNYLLHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ +  NKA  RAH+L GL IA+ ++DE+V I+R S + + A+   ++          
Sbjct: 363 RRRSIFEKNKAEARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I  E   L  +I     
Sbjct: 413 ----------------DYKLSDKQSQAILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQ 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L S +    II  EL+ ++ +    RRT + V  + +++DED I   +++VT++  GY+
Sbjct: 457 VLGSETMRYQIIYDELIEIESKFGDDRRTELMVGEIHNIDDEDLIEESNVIVTLTQNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +RAQ RGG G  G+ M D+DFV  +   STH SVLFF++ G V+  K + +P 
Sbjct: 517 KRIDDVEFRAQNRGGTGVKGMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+L Q E +  ++     E +    +++F TK+G V+R   SD+  I
Sbjct: 577 FGRAAKGIPVVNLLNLQQDETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNI 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+KL   DE++ V   + +++I++ ++ G  V F  + +R    R + GVRGI 
Sbjct: 637 RNNGLIALKLAEGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSMG-RTATGVRGIR 695

Query: 729 LAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GDQV+ M+++   D         Y K   A    I     +     N +   G +  
Sbjct: 696 LNDGDQVVGMSVLGPDDNVLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGIL-- 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E+ I+ ++ +G   R  + +   + R+ +G+R   +++ + + A+  V  +
Sbjct: 754 -VGLTTVSGEEDIMLMTNQGIAIRFHAKNISQTGRATQGVRLIRLAEDSYVSAIAKVEAI 812

Query: 848 ND 849
            +
Sbjct: 813 EE 814


>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
 gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
          Length = 880

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/919 (37%), Positives = 512/919 (55%), Gaps = 82/919 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
                  V +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K +
Sbjct: 18  HNDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPH 77

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSV 120
            KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ            +SLR  LI G GNFGS+
Sbjct: 78  RKCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSL 137

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           DGDP AA RYTECRL   +   LL DL  DTVDF PN+DGS +EPVV+ AR PNVL+NG 
Sbjct: 138 DGDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGA 197

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EVVD   A+I NP+  ++ LME + GPDFPTG  ILG +GI +
Sbjct: 198 SGIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIAD 257

Query: 240 AYATGRGSIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           A+ TGRG+I +RG +  E+  G   R  I++TEIPY  NK+ ++ KIAELV  K +  ++
Sbjct: 258 AFRTGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVS 317

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDESDR G R+V+ELKRGA A V+LN LY++T+LQS FS N+V +   +PE F++  +
Sbjct: 318 DIRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRL 377

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ FR  VV RR +  L +A  R H+L G    +  LD+VV++++ + +  +A + L
Sbjct: 378 LEIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQAL 437

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +                             LS  Q  A+L + L R+T L R+ I  E 
Sbjct: 438 QK--------------------------DFELSAAQAEALLGMPLRRITSLERNKILEEH 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRE 536
           NSL  +     ++LS++ R+L ++++E L++K+E  +PRRT + E     +++ D I   
Sbjct: 472 NSLLAQASNLRELLSNKQRVLRVVEKEALALKNEFGSPRRTVLEEDGDGRIDNIDVIPNN 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +  +T+S  GY+KR+    + AQRRG  G+SG  M+  D + D F+   H  VL FS  G
Sbjct: 532 ESFLTLSEKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERG 591

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  + +++P  S  + G  +I +LS+  GERIT+I P  E      + ++V  T  G 
Sbjct: 592 VVYSFRAYQVPECSRTSAGVPIIQVLSIPAGERITSIFPLSEFRE---DHFLVMLTSKGY 648

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R +L  F  I   G +A++L   DE+  V   TQ + I + ++ G  ++ P    R  
Sbjct: 649 IKRTELPAFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSM 707

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R + G+R + + +GD++ ++ IV    + + E    +      +R  + +        
Sbjct: 708 -RRGARGLRAMRIKEGDEIAAIDIV--PGSVWKESPTLLCTHVLCKRSKASEA------- 757

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                 ++L VSE G  KR     F     +  G+        +
Sbjct: 758 ---------------------PWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGD 796

Query: 837 EIGAL-VAVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + ++ V    V+D   N++I++ +  G   R  V EI I SR  +G+ +     D++V 
Sbjct: 797 RLASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVK 856

Query: 893 SVERIRESEIV--DEAEST 909
           SV  +  S+    DE  S 
Sbjct: 857 SVSVVAASDSPAHDEPPSD 875


>gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
 gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
          Length = 828

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/806 (43%), Positives = 503/806 (62%), Gaps = 15/806 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGS
Sbjct: 1   MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EVVDG +A+IDNPDID++ LME I GPDFPT A I GR+GI  
Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATISGRSGIVE 180

Query: 240 AYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           AY TGRG I +R  + IE      +E I+VTEIPYQVNKA ++EKIAELV+EKR+  I+ 
Sbjct: 181 AYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGISA 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G R+VIE++RG   +V+LN LY  T LQ +F +NMVAL+  +P  F L  +L
Sbjct: 241 LRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQPRLFNLRDML 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EVV RR+ Y L KAR+RAH+L GLAI++AN+DE++ +IR SP P  A+  L+
Sbjct: 301 DCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAGLI 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGR 470
            R+W   D+  +++     +             DG  +L+E Q +AIL+LRL +LTGL  
Sbjct: 361 ARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGLEH 420

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + I +E   L  +I E L IL+S  RL+ +I++EL+ +++     R+T I     D+  E
Sbjct: 421 EKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDISME 480

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+V+T+SH GYVK  PL+ Y AQRRGGKG++   M+DEDF+  L++ +TH ++L
Sbjct: 481 DLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHDTIL 540

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G +Y  KV++LP+ S  +RGK ++N+L L   ERIT I+P  +      + +VV 
Sbjct: 541 CFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDY---PEDKFVVM 597

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT+ G +++  L ++ +    G IA+ L   DE++ V+      +I+L +  G+ VRF  
Sbjct: 598 ATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAGKVVRFAE 657

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R    R + GVRGI L +G +V+S+ +    + +    +   ++   +R  +S    
Sbjct: 658 EQVRSMG-RTATGVRGIRLEEGQRVVSLIVPREYEEEEANVLTVTENGYGKRTPLSEYPA 716

Query: 771 EITSLKNDSS--VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  + K   S  V             +    I+ +S KG   RT   +     R+ +G+R
Sbjct: 717 KSRATKGVVSIKVSERNGSVVGAMEVIDGNEIMLISNKGTLVRTRVNEVSTVGRNTQGVR 776

Query: 829 ATDVSKINEIGALVAVFPVNDNDQII 854
               +   ++  L  +  +++++ +I
Sbjct: 777 LIRTADDEKVVGLQRIDEIDEDEVLI 802


>gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
 gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
          Length = 813

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/894 (38%), Positives = 503/894 (56%), Gaps = 87/894 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + S   +   I +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV
Sbjct: 5   VPSPNIDAARIDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGV 64

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                + K + + GE MG YHPHG++AIYD L RM+QD+S+R  L++GQGNFGSVDGDP 
Sbjct: 65  SSRSAHRKSSSVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSVDGDPA 124

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   +  LL D+ K+TVDF  NYD   +EP VL A  PN+LVNG  GIAVG
Sbjct: 125 AAMRYTEARMSPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSSGIAVG 184

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M+TN+P HNL EV+D  + +ID+P+  +  LME ++GPDFPTGA I+GR  I +AY TGR
Sbjct: 185 MSTNVPPHNLREVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIVGREAIHSAYTTGR 244

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R     E+    RE+IV+TE+P+Q NK+ ++E+IAE V E +I  I+DLRDESDR
Sbjct: 245 GRLRVRAEFEREQADK-RERIVITELPFQQNKSRLVERIAENVNEGKIEGISDLRDESDR 303

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+LKRGA+ADV+ NQL  +  L+  F V  +AL   +P+   L   L+ +V  R
Sbjct: 304 DGIRIAIDLKRGANADVVENQLLEH-HLERTFGVINLALVDGQPQVLDLKETLEHYVEHR 362

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RR++Y L +A DRAH+L G   A+ N+D VV +IR + +   A+  L        
Sbjct: 363 KDVVRRRSEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEALSDE----- 417

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   SE Q   I+ ++L  LT L R++I  E ++L  EI+
Sbjct: 418 ---------------------FDFSEAQAEHIVRMQLGSLTSLERNEIDEEYDALVEEIE 456

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL++ S LLG+IK+EL  +++E    RRT I+EG   +  ED I  ED ++ V+  
Sbjct: 457 RLETILANESELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEEDSLILVTED 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            YVKR+P+S +  Q RGGKG  G  +++ D V+ +F  +TH  +L F++ G  Y+ + + 
Sbjct: 517 DYVKRMPVSAFDPQGRGGKGIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFD 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  ARGK+ +NIL L+  E +T ++   + +   +  ++   T++G V+R + S F
Sbjct: 577 VPEMSRTARGKSAVNILDLDPDEELTAVVNTDDFD---DEEFLTMVTENGYVKRTEASAF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  SG IA  L+  D ++ V       D+L+ T+ G  +RFP S  R    R + GV 
Sbjct: 634 ERVRSSGLIAASLEEGDRLVDVTVTDGSADLLIATRNGMAIRFPESEARAMG-RTARGVN 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  GD V+ +     + +                         +T  +N        
Sbjct: 693 GIKLQGGDSVVGLVTADESRS------------------------LLTITENGYGKRTPF 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           SE R Q            S  G G      D +  NR+G       VS+ ++      + 
Sbjct: 729 SEYRTQ------------SRYGKG----LIDIKTGNRNGPVAAVESVSEDDD------LV 766

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++D+ QI+         R+   ++    R TKGV++   A D+RV SV+ I E
Sbjct: 767 VMSDDAQIM---------RIHAADVSRVGRNTKGVIVMRLAGDDRVASVDVIPE 811



 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 13/241 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            ++    R+  I    +  D +L  +   +E+ ++L T+     R P+SA     GR   
Sbjct: 481 EEYGDDRRTSII----EGGDTVLHEDLIPEEDSLILVTEDDYVKRMPVSAFDP-QGRGGK 535

Query: 723 GVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ G +L +GD+V  +      D      +    Y         +      +      D 
Sbjct: 536 GIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDL 595

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  ++     +    E+F+  V+E G+ KRT +  F     SG    +       E  
Sbjct: 596 DPDEELTAVVNTDDFDDEEFLTMVTENGYVKRTEASAFERVRSSGLIAASL-----EEGD 650

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV V   + +  +++ +  G  IR P +E R   R  +GV        + VV +    E
Sbjct: 651 RLVDVTVTDGSADLLIATRNGMAIRFPESEARAMGRTARGVNGIKLQGGDSVVGLVTADE 710

Query: 900 S 900
           S
Sbjct: 711 S 711



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 71/175 (40%), Gaps = 15/175 (8%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +  +    A+  E +  +K    + R   GD    + ++   +V         ++L 
Sbjct: 452 VEEIERLETILANESELLGVIKEELREIREEYGDDRRTSIIEGGDTV-------LHEDLI 504

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E  ++ V+E  + KR     F    R GKGI   ++ + + +  +   F  N +D ++
Sbjct: 505 PEEDSLILVTEDDYVKRMPVSAFDPQGRGGKGIIGANLKEGDRVSKV---FRANTHDYLL 561

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
             ++ G   ++   ++   SR  +G   V I     DE + +V  +   +  DE 
Sbjct: 562 CFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEELTAV--VNTDDFDDEE 614


>gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
 gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
          Length = 840

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/841 (41%), Positives = 518/841 (61%), Gaps = 38/841 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S   ++   +  V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  + +
Sbjct: 1   MSDLFDDNHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ ++YDAL RMAQD+S++  L++GQGNFGSVDGD  
Sbjct: 61  SHRSPYKKSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  LL DL KDTVDF PNYD S  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H L E++D  V  IDNP+  ++ +M+I++GPDFPTG +I GR GI +AY TGR
Sbjct: 181 MATNIPPHRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIFGRKGITDAYTTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R  +HIE+  G++E I++ E+P+QVNK+ ++E IA+LVR+K I  I+++RDESDR
Sbjct: 241 GRIKVRAKTHIEQ-KGNKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVV+ELKR A ++++LN L++ T +Q  F + M+A++  +P+ F L+ +   F+  R
Sbjct: 300 EGIRVVMELKRDAMSEIVLNNLFKSTQMQVTFGIIMLAIHNKEPKVFNLMELFDLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IAV N+DEV++IIR S +   AR  LM R     
Sbjct: 360 KTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSR----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q +AILE+RL RLTGL  + I NEL  L   I 
Sbjct: 415 ---------------------FSLSEIQAKAILEMRLRRLTGLEIEKIENELAELLKTIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL S  ++  II++EL+ + ++  TPRRT IV+   D++ ED I  E MVVT++H 
Sbjct: 454 YLEGILKSEEKINQIIREELIEIGEKYRTPRRTEIVDDYDDIDIEDLIPNEPMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP+ +Y  Q RGGKG++ V   D+DF+   F  +TH +++F +  G +Y  KV+R
Sbjct: 514 GYIKRVPVKLYEKQHRGGKGKTAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYR 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  +         +VF T++G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQPDEKIMAIIPTTDFSEEKG---LVFFTRNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             I  +G  A+ LD  DE++  +    E   + + TK G C+RF +   R    R S GV
Sbjct: 631 SNIRSNGVRAINLDENDELVEAKIVKPETKWLFVATKKGLCIRFKVEDAREIG-RVSRGV 689

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE- 782
             I     GD V   A +   +++ DE +   +    +R   S   E+  + K   S++ 
Sbjct: 690 TAIKFKIDGDYVCGAATL---ESEEDEILMLSEKGLGKRTTASEYREQNRAGKGVISMKL 746

Query: 783 -GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                +     +  +++ ++ ++  G   R      R + R+  G++   V K +++ ++
Sbjct: 747 TSKTGDVVGVVMVEEDKDLMCLTSVGKMIRVDMETIRKAGRNTSGVKVVSVEKKDKVVSM 806

Query: 842 V 842
            
Sbjct: 807 A 807


>gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 836

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/898 (36%), Positives = 510/898 (56%), Gaps = 88/898 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +  +   + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL D+ KDTVDF  NYDG  +EP VL A +PN+L NG  GIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP+HNL E++ G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNV 252

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR    IE+    R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+RDES R+G 
Sbjct: 253 VIRSKVEIEQLQT-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P    +   L+ ++  + +V
Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VR+TK++LNK ++R H+L GL IA  N+DEVV II+ S N + A   L  +        
Sbjct: 372 LVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q +A+L++RL  L+ L  + ++ E   L   I+ C 
Sbjct: 424 ------------------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCK 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
            +L+ +   L IIK+EL  + D+    RR+ I+     +++DE  I  E++V+T+S  GY
Sbjct: 466 KVLADQKLQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P
Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G    +G   +N++ + + ERI +++         ++ Y  F TK+G V+R  L++FI 
Sbjct: 586 YGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNGIVKRTSLNEFIN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +GK+A+  D  D + SV      ++I + +  G  VRF  + +RV + R + GV GI
Sbjct: 642 ILSNGKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL KG+ V  ++                                                
Sbjct: 701 SLNKGEFVNGLS------------------------------------------------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+V + G GK TS   +R++ R+ KG++   V+  +  G +V    V
Sbjct: 713 -----TSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT--DRTGPVVTTTTV 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             N+ ++++S  G ++R  + E+    + T GV +     +ER+  V   +E     E
Sbjct: 766 FGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDKE 823


>gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7]
 gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7]
          Length = 819

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/836 (41%), Positives = 519/836 (62%), Gaps = 41/836 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE+GI  V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM  +G      Y
Sbjct: 2   EERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ DL +DT+DF PNYDG  QEP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL EV++  +AV  +PDI +  LME  I+GPDFPTG  ILG+T IK AY TG G IV+
Sbjct: 182 PHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYILGKTAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++ IVVTEIPY VNKA M+EK+++LVREK+I  I ++RDES+R G RV
Sbjct: 242 RAKTEIE-EKGSKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ TSLQ+ F  N +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMITLYLDHQEEVIK 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA DRAH+L GL  A+  +D ++ +IR S   E  +  LM+           
Sbjct: 361 RRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEE---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +S+ Q +AI E++L RL GL R  I ++LN L   I +  DI
Sbjct: 411 ----------------FNMSDKQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R RLL II  EL  +KD+    RRT I++G  D+EDED I  ED+++++++ GYVKR
Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYVKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ Q RGG+G  G+    +D V+ L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 515 MPVDTYKTQNRGGRGIKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L+L++ E++ +++     +    N+ Y+ F T  G V+R  +++F +I 
Sbjct: 575 RSAKGLPVVNLLNLDKEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++SV+     + IL+    G+ VRF  + +R    R++ GV+GI++
Sbjct: 635 QSGKIAISLRDDDQLVSVKLTGGNDQILIAASNGKLVRFEETNVRPMG-RSASGVKGINV 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +VI M        D + +   +       ++   +   +++         N +E  
Sbjct: 694 -DGSEVIGMT------TDKEGKYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERN 746

Query: 790 CQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            Q + L+    ++ +L +++ G   R      + + R+ +G+R   V+  N++ ++
Sbjct: 747 GQIVALRAVNGDEDLLIITDDGIMIRLPMEQVKTAGRATQGVRLIKVNAENKVSSV 802


>gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 815

 Score =  670 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/839 (41%), Positives = 513/839 (61%), Gaps = 36/839 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++GI  + +T EM+ S++ YA++VI+ RA+PD +DGLKPV RRI+ GM ++G   +K Y
Sbjct: 2   EQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQ +S R +L++G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  ++ D+ KDTVDF PNYDG  +EP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 122 ESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           +HNLGEVVD  +AV  NPDI +  LM+  I GPDFPTGA ILGR  IK AY TG G IV+
Sbjct: 182 SHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYILGRGAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE    +++ I+VTE+PY VNKA ++EKIA  V+EK I  I +LRDESDR+G R+
Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ T+LQ+ F VN +AL   +P+  +L  ++  ++  +E+V+ 
Sbjct: 302 VIELRRDVQPEVILNQLYKLTALQTTFGVNNIALVNGEPKTLSLKEMINVYLEHQEDVIR 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA DRAH+L GL  A+  +D ++ +IR S   E  ++ LM            
Sbjct: 362 RRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLMDE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q +AI E++L RL GL R+ I NELN+L   I +  DI
Sbjct: 412 ----------------FDMSERQAKAIREMQLQRLAGLEREKIENELNTLLETIADLKDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+++ R++ II QELL +K +    RRT I++G  D+EDED I  ED+V+++++ GYVKR
Sbjct: 456 LANKERIIAIIDQELLEIKAKYGDKRRTEIIQGSFDIEDEDLIPEEDVVISLTNNGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+AQ RGGKG  G+   ++D V  L  +STH  +L F++ G VY+ K + +P   
Sbjct: 516 MPIDTYKAQNRGGKGIKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G  +IN+L++++ E++ T++     E    + ++ F TK G V+R  L +F  I +
Sbjct: 576 RQAKGLPIINLLNMDKDEQVKTMISITPSE-VDESHFLFFVTKDGLVKRTGLPEFENIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGK+A+ L   DE++ V+    +++ILL    G+ +RF  + +R    R++ GV+G+++ 
Sbjct: 635 SGKLALTLREGDELVDVKLTNGKSEILLAAANGKAIRFDENDVRPMG-RSASGVKGMNVD 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
               +         +        Y K    +   +S    +     N +   G +   + 
Sbjct: 694 DSHIIGVTTNTEGQNILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVSIKA 753

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            E     + ++ ++ +G   R      + + R+ +G+R   V +    GA V+   V D
Sbjct: 754 VE---GNEDLMIITNEGIIIRLPMEQVKSAGRATQGVRLIKVGE----GASVSSITVVD 805


>gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A
 gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 825

 Score =  670 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/835 (42%), Positives = 533/835 (63%), Gaps = 29/835 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I  E+++SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +   WNK Y K
Sbjct: 6   REIVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD++ RMAQ++SLR +LI+GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +  LL DL K+TV+F PNYDG+   P +L ++ PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I + +I L  L++ I GPDFPT  +I G+ GI+ AY TG+G I IR  
Sbjct: 186 NLNEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKIYIRAR 245

Query: 254 SHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IEK   ++++ I+  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+V+
Sbjct: 246 NKIEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+ A +++ILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ REE+V RR
Sbjct: 306 EIKKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREEIVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L+K   R+H+L GL+IA+ N++ ++ +I+ + +   A+  +++++W          
Sbjct: 366 SIFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTW---------- 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           +  +S      D   + +E Q +AIL+LRL +LT L ++ +  E + L  +IKE   IL 
Sbjct: 416 IYKNSEKINQKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILK 475

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR R+  +I+ EL+S+K+     RRT I E   D+  ED I +ED+VVT+SH GYVK  P
Sbjct: 476 SRDRMREVIRDELVSIKNNFGDQRRTEITENNPDISIEDLINQEDVVVTLSHSGYVKYQP 535

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS Y AQ+RGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  
Sbjct: 536 LSDYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRH 595

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G+ ++N+L L+  ERIT I+P  E +   +NL +  AT  G V+++ L +F +   +G
Sbjct: 596 AKGRPIVNLLPLSNKERITAILPIHEFK---DNLNIFMATAQGIVKKSSLKEFKKPRIAG 652

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L + DE++ V     +N+I+L T+ G+ V+F  +++R    R + GVRGI ++K 
Sbjct: 653 IIAINLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTMG-RTASGVRGIKISKN 711

Query: 733 DQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           D+V+S+ +      +L A  +   +   +     + R   G      + KN   +     
Sbjct: 712 DKVVSLIVPYKKESILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKNGKIIGAIQV 771

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            E+ Q        I+ ++  G   R  + +  +  R+ +G+     SK  ++ AL
Sbjct: 772 VEKDQ--------IMMITNAGTLVRIRASEIGVLKRNTQGVILIRTSKNEKVVAL 818



 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 11/219 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              QE+ ++  +  G     P+S       R   G     + + D + S+ +    D   
Sbjct: 515 LINQEDVVVTLSHSGYVKYQPLSDYNA-QKRGGKGKSAAKIKEEDFIESLVVTNTHDTIL 573

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                  + +MK               I +L   S+ E   +     E K     I   +
Sbjct: 574 CFSSRGILYWMKVYQLPESSRHAKGRPIVNLLPLSNKERITAILPIHEFK-DNLNIFMAT 632

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K++S  +F+    +G  I A ++   +E   L+ V   N  + I+L +  G +++
Sbjct: 633 AQGIVKKSSLKEFKKPRIAG--IIAINLRANDE---LIGVSLTNGKNNIMLFTQNGKVVQ 687

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              N +R   R   GV     +K+++VVS+    + E +
Sbjct: 688 FLENSVRTMGRTASGVRGIKISKNDKVVSLIVPYKKESI 726



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 99/226 (43%), Gaps = 15/226 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           +   +  G VK+  L  ++  R    G   + +R  D +  + 
Sbjct: 611 ERITAILPIHEFKDNLNIFMATAQGIVKKSSLKEFKKPRIA--GIIAINLRANDELIGVS 668

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +   +++ F+  G V +     +      A G   +  + +++ +++ +++       
Sbjct: 669 LTNGKNNIMLFTQNGKVVQFLENSVRTMGRTASG---VRGIKISKNDKVVSLIV------ 719

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL-DSRDEILSVETCTQENDILL 698
            +    ++ AT +G  +R K++DF   +R+  G I++K+     +I+      +++ I++
Sbjct: 720 PYKKESILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKNGKIIGAIQVVEKDQIMM 779

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            T  G  VR   S I V   RN+ GV  I  +K ++V+++  ++  
Sbjct: 780 ITNAGTLVRIRASEIGVL-KRNTQGVILIRTSKNEKVVALQRIVEP 824


>gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216]
 gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216]
          Length = 910

 Score =  670 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/861 (39%), Positives = 483/861 (56%), Gaps = 63/861 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E            +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSESTTEP-PHPGDRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KCAR+ G+VMG YHPHG+ +IYDAL R+AQDWSLR  L++GQGNFGS 
Sbjct: 60  YDGGYRPDRGYSKCARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECR+   A  ++ D+ ++TVDF PNYDG   EP VL +R+PN+LVNG  
Sbjct: 120 GNDPAAAPRYTECRMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G   ++DNPD   +     L+  I+GPDFPTGA+ILG  G
Sbjct: 180 GIAVGMATNIPPHNLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHRG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E IA LVR+ R+  I
Sbjct: 240 ISDAYRTGRGSITMRAVVEVEEIQ-GRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGI 298

Query: 297 ADLR-DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD++   S + G R+VI L+R A A V+LN LY++T LQ+ F  NM+AL    P    + 
Sbjct: 299 ADVQDHTSGKTGQRLVIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIH 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             LK ++A + +V+VRRT++ L KA +RAH+L  L  A+  LDEV+ +IR SP  E+AR 
Sbjct: 359 AFLKHWIAHQLDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARD 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                          G + + E+Q+RAILE++L RL  L R  I +
Sbjct: 419 GLM--------------------------GLLEIDEIQSRAILEMQLRRLAALERQRITD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E + L   I +  DIL+   R   I+  EL  + +     R+T+I+    DM  ED I  
Sbjct: 453 EYDELMRMIGDFNDILARPERQRQIVGDELAELVERYGDERKTQILPFEGDMTVEDLIPV 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YRAQRRGG+G  G  +R++D V   F  +TH  +LFF++L
Sbjct: 513 EDVVVTVTRGGYAKRTKTDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNL 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G    RG+ + N+L+   GERI  ++   + E +    Y+V AT+ G
Sbjct: 573 GRVYRAKGYELPEGGRDGRGQHVANLLAFQPGERIVAVLDIEDYEQA---PYLVLATRGG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS----------RDEILSVETCTQENDILLTTKLGQC 705
            V++ +LS++      G IA+ L S           DE+ +    +++ D+ L ++ G  
Sbjct: 630 IVKKTRLSEYDSNRSGGLIAINLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMS 689

Query: 706 VRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKH 757
           VRF  +   +   GR + GV G+     D++++MA+           +  Y +R     +
Sbjct: 690 VRFEATDENLRPMGRATSGVTGMKFRGEDELLAMAVARDDLFVFVVTELGYAKRTKIEHY 749

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               R  +     ++T  + D      +SE         +  +L V + G   R+   + 
Sbjct: 750 RKQGRGGLGIKVAKLTEERGDLVGALTVSE---------DDEVLVVMQAGRVVRSRVDEV 800

Query: 818 RISNRSGKGIRATDVSKINEI 838
               R   G+        + I
Sbjct: 801 PDKGRDTMGVTFARPETGDRI 821


>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
 gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
          Length = 872

 Score =  670 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/934 (36%), Positives = 511/934 (54%), Gaps = 123/934 (13%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCAR+ GEV+GK+HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD---L 146
           ++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTECRL     F LD     
Sbjct: 61  DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCFFFLDIDAIF 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
               VDF PN+D S +EP +L AR P++L+NG  GIAVGMATNIP HNLGE+VD    +I
Sbjct: 121 IIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSVMI 180

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT--SGDRE 264
           +NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V+RG + IE       R 
Sbjct: 181 ENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVMRGKTDIETIDVKSKRS 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G RVVIELKRGA   ++L
Sbjct: 241 AIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V+ RR ++ L++A +R 
Sbjct: 301 NNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSVIERRARFKLSQALERK 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ G+ I + NLD V++IIR + N   AR  L++                         
Sbjct: 361 HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q  A+L++ L +LT L R    +E  SL  EI +  ++LS++  +   +   
Sbjct: 397 --FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVDG 454

Query: 505 LL----------------------------SVKDELDTPRRTRIVEGL-LDMEDEDCIVR 535
           L                              +K++  TPRR+ I +    +++D D I  
Sbjct: 455 LDYLRAEINVVIRELKLMWSLFKLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPN 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E+M++ +S  GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  
Sbjct: 515 EEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G
Sbjct: 575 GIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNE---FGEDQYLVMLTVNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++  L+ F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R 
Sbjct: 632 YIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRA 691

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + GV  + L +GD++ SM I+                                  
Sbjct: 692 LG-RKTRGVLAMKLKEGDKMASMDII---------------------------------- 716

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
               +   N+ E   +   L   ++L +++ G GKR     FR  N +  G++   +   
Sbjct: 717 ---PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPD 773

Query: 836 NEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
               +L AVF V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++     
Sbjct: 774 ---CSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEH 830

Query: 888 DERVVSVERI-----------RESEIVDEAESTE 910
             ++ S   I             + ++ EAE  E
Sbjct: 831 AGKIQSASLISAAEEEEEQDPESASLISEAEEPE 864



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 103/278 (37%), Gaps = 33/278 (11%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T IV         +    +  +V ++  GY+K+VPL+ + A R    G   + + 
Sbjct: 605 DGERITSIVP-------VNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTS--GIISIQLA 655

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +  +        V   S  G V      +L     + RG   +  + L +G+++ +
Sbjct: 656 PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRG---VLAMKLKEGDKMAS 712

Query: 633 IMPFPEDESSWNNLY----------VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDS 680
           +   P    +    Y          ++F   +G  +R  L+ F     NR G    KL  
Sbjct: 713 MDIIPATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPP 772

Query: 681 RDEILSVETC--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + +V             +  ++L ++ G   R  +  I + + R++ GV  + L   
Sbjct: 773 DCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRS-RSARGVILMRLEHA 831

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++ S +++  A+ + ++       +S        D E
Sbjct: 832 GKIQSASLISAAEEEEEQDPESASLISEAEEPEKQDPE 869


>gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
 gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
          Length = 837

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/900 (36%), Positives = 524/900 (58%), Gaps = 75/900 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +   +  +T   I+ E++NS++ YA++VI+ RAIPD+RDG KPVHRR+L+    MG+  +
Sbjct: 12  ESLNKTKVTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHD 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K AR+ GEV+GKYHPHG+ A Y+ + RMAQD+S+R +L++G GNFGS+DGD  AA 
Sbjct: 72  KPYKKSARLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAM 131

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L ++ K+TVDF  NYDGS  EP VL A +PN+L NG  GIAVGMAT
Sbjct: 132 RYTEARLSKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMAT 191

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++D  + +  N D  ++ + ++++GPDFPT A I+G  GI + + TGRGSI
Sbjct: 192 NIPPHNLSEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIVGTDGINSYFETGRGSI 251

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + I  +   + QI++ EIPY VNK+ +++KI +LV+ + I  IADLRDES R+G 
Sbjct: 252 TIRSKAEIIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K+    +V+LN+L++ T LQS FSVNM+AL   +P+   +  +L+ ++  +  V
Sbjct: 312 RIVIEVKKDTVPEVLLNKLFKMTPLQSNFSVNMLALVDKEPKLLNIKEVLQEYLKHQVNV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VR+TK+ L KA +R H+L GL IAV N+D V++IIR S + + A ++L+ +        
Sbjct: 372 LVRKTKFELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITK-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q +AIL++RL  L+ L R  I  EL  +   I+E  
Sbjct: 424 ------------------YKLTKIQAKAILDMRLRSLSNLERLKIEQELKEVKALIQELS 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            IL S  + + II +EL+++K+     R+T I+ G+   ++DED I  E++V++ S   Y
Sbjct: 466 GILKSSDKQMDIISKELINLKNTYGDERKTEILYGVSASIDDEDLIPVENIVISRSANNY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y+ QRRGG G  GV   ++D V D+   +THT +LFF+  G VY+ +   +P
Sbjct: 526 LKRISIETYKIQRRGGVGVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS Q++G   +N++++ + E+I  ++P  +        ++  AT  G V+R  LS++  
Sbjct: 586 PGSRQSKGVPALNLMNIEKNEKILVMLPVEDYSKG----FLFLATTKGIVKRTSLSEYNS 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +GK A+ L   D++LS      +++I L    G   RF    +RV   R + GV+GI
Sbjct: 642 IKSNGKRAITLREGDQLLSAFLTRGKDEIYLGASNGLLTRFNEQDVRVMG-RTASGVKGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +           I + A+    ++I    ++      +SGD                   
Sbjct: 701 N-----------IEVKAEGRNKKKIDTSINVVGASSSLSGD------------------- 730

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL++ EKG GK + + ++R++ R  KG+     +  ++ G L+    V
Sbjct: 731 -----------LILSIGEKGLGKLSEAENYRLTRRGSKGVVTLKQN--DKTGKLIFSSAV 777

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             +++I++V+  G +IR  +  +R+  R+T GV +      E+++S    ++ E  +E E
Sbjct: 778 KGDEEILIVTSSGKIIRQELKNLRVIGRSTSGVTLVKLQPKEKIISAAVYKKEEDENEIE 837


>gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2]
          Length = 852

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/872 (37%), Positives = 489/872 (56%), Gaps = 61/872 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      E     +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MADENDIGTEIN--RVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+R+ G+VMG+YHPHG++AIYDA+ R+ Q W++R  L+ GQGNFGS 
Sbjct: 59  FDGGYRPDRNFSKCSRVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTEC++   A  ++ D+ + TVDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 119 GDDGAAAPRYTECKMAPLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G   ++ +P+   +     L+ I++GPDFP GA ILGR G
Sbjct: 179 GIAVGMATNIPPHNLREVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATILGRKG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI  R V  +E+    R  +VVT++PY VN   +  KIA  V++ ++  I
Sbjct: 239 IEDTYRTGRGSITQRAVVEVEEIQ-GRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGI 297

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           ADLRDES  R G R+VI LKR A A V+LN LY++TSLQ  FS NM+A+    P   +L 
Sbjct: 298 ADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVDSVPRTLSLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L+ +V  + EV+VRRT++ L KA +RAH+L G   A+  LDEV+ +IR SP+ + AR 
Sbjct: 358 SFLRLWVKHQVEVIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARS 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+L+L RL  L R  I+ 
Sbjct: 418 GLMD--------------------------LLEVDEIQANAILDLQLRRLAALERLKIQE 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534
           E   +  +I E   IL++ +R   I+ +EL  + +     RRT+I+ G   D+  ED I 
Sbjct: 452 EAEKIEQQIAEFKYILATPARQREIVSEELDEIVERYGDDRRTKIMAGFDGDVSMEDLIP 511

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E++VVT++  GY KR    +YRAQ RGGKG  G  +R +D V   F+ STH  +LFF++
Sbjct: 512 EEEVVVTITRGGYAKRTQNHLYRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTN 571

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ K + LP GS  A+G+ + N+L+L  GE I  ++   + E +    +++ AT+ 
Sbjct: 572 TGRVYRAKAYELPEGSRDAKGQHVANLLALQPGETIAKVLSIRDYEEAE---FLILATQS 628

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDS----RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           G V++ +LS++      G IA+ L       DE++S    + E+ +L+ ++ G  +RF  
Sbjct: 629 GVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAA 688

Query: 711 SAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQR 762
               +   GR + GV G+     D++++M ++          +  Y +R    ++    R
Sbjct: 689 DDDSIRPLGRVTGGVTGMKFKGDDELLTMDVIQPDTFVFVVTEGGYAKRTPVDEYRLQGR 748

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
             +     +IT  + D      + E          + +L V E+G   R++  +     R
Sbjct: 749 GGLGIRVAKITEQRGDLVGGLIVDE---------GEEVLVVMERGKIVRSNIDEVPAKGR 799

Query: 823 SGKGIRATDVSKINEIGALVAV--FPVNDNDQ 852
           +  G+      K + I A+       V + D+
Sbjct: 800 NTMGVVFAKPGKNDRIIAVTRGPETVVEELDE 831



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 22/243 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD----EDFV 577
           E +  +         + ++  +  G VK+  LS Y + R G  G   + +R+     D +
Sbjct: 605 ETIAKVLSIRDYEEAEFLILATQSGVVKKTRLSEYDSNRTG--GVIAINLREYKGQPDEL 662

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               IVS+   +L  S  G   +       I  P  R    +  +     + + T+    
Sbjct: 663 VSARIVSSEDHLLMISRKGMSIRFAADDDSI-RPLGRVTGGVTGMKFKGDDELLTMDVIQ 721

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEN 694
            D       +V   T+ G  +R  + ++    R G    +A   + R +++      +  
Sbjct: 722 PD------TFVFVVTEGGYAKRTPVDEYRLQGRGGLGIRVAKITEQRGDLVGGLIVDEGE 775

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM-----AIVLHADADYD 749
           ++L+  + G+ VR  I  +     RN++GV      K D++I++      +V   D + D
Sbjct: 776 EVLVVMERGKIVRSNIDEVPAKG-RNTMGVVFAKPGKNDRIIAVTRGPETVVEELDEEAD 834

Query: 750 ERI 752
           E  
Sbjct: 835 EPE 837


>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
          Length = 950

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/914 (36%), Positives = 512/914 (56%), Gaps = 68/914 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I    +  E + SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++ NK + 
Sbjct: 78  DSRIIETELRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLQHNKPFR 137

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG+ A+YDAL R+AQD+S+R+ L++G GNFGS+D DPPAA RYTE
Sbjct: 138 KCARVVGEVLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPPAAMRYTE 197

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRLQ  A   LL DL  DTVDF PN+D S  EP VL AR PN+L+NG  GIAVG+AT IP
Sbjct: 198 CRLQAVASAMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAVGIATKIP 257

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-----AVILGRTGIKNAYATGRG 246
            HN+ EVV+G  A+I NPDI +  LM  I  PDFPTG       I+    ++ AY  G+G
Sbjct: 258 PHNMREVVEGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQAYEEGKG 317

Query: 247 SIVIRGVSHIEKTS---GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I++R   HIE  S     +  +V+TE+PYQ NK+A++E+IA LV    +  ++D+RDES
Sbjct: 318 GILMRAKIHIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGVSDIRDES 377

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVV+E+KRG +AD++LNQL ++T++QS FS NMVAL G  P   TL   L+ F++
Sbjct: 378 DRDGVRVVVEVKRGGNADLVLNQLLKHTAVQSRFSANMVALVGATPLTLTLKNFLQHFLS 437

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR EVV RR ++ L +A+ R H++ G   A+ +LD VV  IR + +   A   L      
Sbjct: 438 FRCEVVERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAALVVL------ 491

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS  Q   +L + L RLT L    ++ E   L  +
Sbjct: 492 -------------------RASPFGLSREQAEGVLGMTLRRLTSLEASKLQEEQAQLQAK 532

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542
           I +  D+L  + R+L ++  E   +  +  TPRRT I+ +G +++  ED I     +V  
Sbjct: 533 IADLQDLLQRQDRILQVVTSEAEELAAKFGTPRRTHIITDGEVELRHEDVIPNAPSLVVY 592

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KRV    + AQ+RGG G++G  ++++D + ++  V+ H  +LFF++ G  Y  +
Sbjct: 593 SRRGYIKRVRPDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLR 652

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRN 660
            + +P G+  A G A+  +L  ++  RI  ++P     ++  +    VV  T+ G ++R 
Sbjct: 653 AYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRT 712

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  INRSG +AM +   D +  V  C+  + +L+    G    F I+ +R    R 
Sbjct: 713 ALKQFTSINRSGLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITKLRRMG-RA 771

Query: 721 SVGVRGISLAKGDQVISMA-----IVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           +VG + ++L+KG  +++MA     IV     D D       H        + +T      
Sbjct: 772 AVGNKSMTLSKGTDIVAMAILPAGIVAEGPNDEDYLSIEGSHDMDYSEGKAAETP----- 826

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                     +E    E +    ++L V+++G GKRT   +FR+  R+G GI+A  ++  
Sbjct: 827 ----------AESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRARTGSGIQALRLNLG 876

Query: 836 NEIGALVAVFPV----------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           + + A+                     ++L + +G L+RVPV ++ I SR  KG  +   
Sbjct: 877 DRLAAVQDESSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIHSRFAKGHRLVKV 936

Query: 886 AKDERVVSVERIRE 899
            + + VV+   + +
Sbjct: 937 RQGDEVVAATVLSK 950


>gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A
 gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37]
 gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 836

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/898 (36%), Positives = 509/898 (56%), Gaps = 88/898 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +  +   + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL D+ KDTVDF  NYDG  +EP VL A +PN+L NG  GIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP+HNL E++ G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNV 252

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR    IE+    R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+RDES R+G 
Sbjct: 253 VIRSKVEIEQLQT-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P    +   L+ ++  + +V
Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VR+TK++LNK ++R H+L GL IA  N+DEVV II+ S N + A   L  +        
Sbjct: 372 LVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q +A+L++RL  L+ L  + ++ E   L   I+ C 
Sbjct: 424 ------------------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCK 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547
            +L+ +   L IIK+EL  + D+    RR+ I+     +++DE  I  E++V+T+S  GY
Sbjct: 466 KVLADQKLQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P
Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G    +G   +N++ + + ERI +++         ++ Y  F TK+G V+R  L++FI 
Sbjct: 586 YGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNGIVKRTSLNEFIN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +GK A+  D  D + SV      ++I + +  G  VRF  + +RV + R + GV GI
Sbjct: 642 ILSNGKRAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL KG+ V  ++                                                
Sbjct: 701 SLNKGEFVNGLS------------------------------------------------ 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+V + G GK TS   +R++ R+ KG++   V+  +  G +V    V
Sbjct: 713 -----TSSNGSLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT--DRTGPVVTTTTV 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             N+ ++++S  G ++R  + E+    + T GV +     +ER+  V   +E     E
Sbjct: 766 FGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDKE 823


>gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 808

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/889 (38%), Positives = 504/889 (56%), Gaps = 86/889 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   +I DE+ NSY+ Y+++VI+GRAIPDLRDGLKPV RRILFGM ++G+  N+ + K
Sbjct: 3   EEIIHKNIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEVMGK+HPHG+AAIYDAL RMAQ +S+R  L+EGQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARIVGEVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++  A  LL D+ K+TV   PN+DGS  EP VL  + PN+L+NG  GIAVGM T+IP H
Sbjct: 123 RMETLAEELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++D    +I +P+  +  L+  I+GPDFPTG +I+    I + Y  G+G I +R +
Sbjct: 183 NLVEIIDAISLLIKDPECSVSDLLRHIKGPDFPTGGMIMDAASIPSIYQEGKGRITVRAI 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE  SG   QIVV+EIPY  +KA ++E+I    +  R + I ++RDESD++G RVVIE
Sbjct: 243 AEIE-ESGGSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           LKRGA  +V+LN L+++T LQ+ FSVNM+ ++   +P    L  IL+ F++ R  V+  +
Sbjct: 302 LKRGADPNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSK 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L +A  RAH++ GL  A  ++D VV IIR S N E A + LM+             
Sbjct: 362 TEYDLEQASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLME------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T+ +++ Q+ AIL++R+ +LTG+  + + NE   L  +I E   IL+
Sbjct: 409 -------------TLEVTQEQSSAILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S  ++ GII  EL  +K +    RRTRI +    D   ED I  ED+V+ V+  GY+K  
Sbjct: 456 SDEKVYGIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKST 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  YR Q RGGKG  GV   DEDFV ++   +  +  +  +S G  Y      +   S 
Sbjct: 516 PLESYRKQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++GK L N + ++  E +  ++   ++E       +V  T+ G +++ +   F+ +  S
Sbjct: 576 DSKGKLLANYIKIDPDENVQAVLSTRKEE--VQGKQLVITTRSGKIKKTEFEAFLNVRIS 633

Query: 672 GKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ L+  D ++       +++ I+++TK G  +RFP+  +R    R++ GV GI L 
Sbjct: 634 GIKAISLNEGDRVIDASLTSREDDTIIISTKNGMVIRFPLDQVRSMG-RSAAGVMGIRLK 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D+V+   IV   D                                             
Sbjct: 693 KNDEVVGANIVASEDT-------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  +F+LT +EKG GKRT   ++R  NR G G++     +  +IG ++    VN +
Sbjct: 709 -------RFLLTATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLE--KIGKVIGTLVVNSD 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D++IL +  G  IR+PV+++R   R TKGV I     ++   S+  + +
Sbjct: 760 DEVILATKLGMSIRIPVSQVRPTGRVTKGVRIVDLKDNDIAASMAVVVD 808



 Score = 91.1 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 86/217 (39%), Gaps = 9/217 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
               E+ +L+ TK G     P+ + R   GR   GV G+     D V+++          
Sbjct: 496 VIPDEDIVLMVTKKGYIKSTPLESYR-KQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTV 554

Query: 748 ---YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 +   + +            + + +       E   +    ++ +++ + ++  +
Sbjct: 555 IITSKGKAYVLSNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTRKEEVQGKQLVITT 614

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  K+T    F   N    GI+A  +++ + +  + A     ++D II+ +  G +IR
Sbjct: 615 RSGKIKKTEFEAF--LNVRISGIKAISLNEGDRV--IDASLTSREDDTIIISTKNGMVIR 670

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            P++++R   R+  GV+     K++ VV    +   +
Sbjct: 671 FPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASED 707


>gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 846

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/909 (36%), Positives = 527/909 (57%), Gaps = 86/909 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH     +     +  V I +E++ S+L+YA++VI+ RA+PD+RDG+KPV RRIL+ M  
Sbjct: 15  EHSSLDSKINFNRVQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMND 74

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+   +++ K A + G VMG+ HPHG+ +IY+A+ RMAQD++ R  LI G GNFGS+DG
Sbjct: 75  LGLSNQERFKKAAAVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDG 134

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K A  L+ ++ ++TVDF   YDG+ +EP VL A +PN+LVNG  GI
Sbjct: 135 DSAAAMRYTEARMSKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGI 194

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HN  EV++  +A I+N +I+   LM+ ++GPDFPTG  ILG   +KN Y 
Sbjct: 195 AVGMATNIPPHNFKEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEILGAENLKNIYN 254

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TG+G I IR  + I +   ++  IV+TEIP+Q+ K++++E IA L +EK I  I DLRDE
Sbjct: 255 TGKGRIFIRSKTQIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDE 314

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+RQG ++VI+LKR  +  V+LN LY+ + +Q  F+ NM+AL    P+   L  +LK F 
Sbjct: 315 SNRQGIKLVIDLKRDVNPHVVLNNLYKNSQVQVSFNFNMIALVKGVPKLVNLKQMLKEFF 374

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR  V+ R+ ++ L+KA  + H++  L IA+ ++D VVR+I+ S N + A+ +LM++  
Sbjct: 375 DFRINVIQRQKQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEK-- 432

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L E+Q++ ILE+ L ++T L  + I+ E   L +
Sbjct: 433 ------------------------YQLDELQSKVILEMSLQKITNLEIEKIKQEDTELSL 468

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVV 540
           +I EC +I++S      I+KQ+LL+++      RRT I      LD++    I +E +++
Sbjct: 469 KISECQNIINSILLKEQILKQDLLNLQKNFQDGRRTVINMENQDLDIDKSSLIEKEKILI 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+ L  Y+ Q +GGKG  G+ M  +DFV    I STH   LFF++ G VY+
Sbjct: 529 TITHKGYIKRLNLDTYKKQNKGGKGVIGITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQ 588

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +   S  A+G  L+N++ + +GE +TT+    E   + +  Y+V  TK G ++RN
Sbjct: 589 IKGYEIASYSRHAKGIPLVNLIPMAKGEFLTTLTSVTEFNKNKD--YLVLVTKKGFIKRN 646

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++ ++  I  +GKIA  L   DE+L+V   + + DI+L +  G+ +R   ++IR    R 
Sbjct: 647 RIQEYANIRSNGKIAFALKKDDEVLAVLKTSGQQDIILASSGGKSIRLKENSIRT-TNRK 705

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV G+ + K +Q++  A+V H + D                                 
Sbjct: 706 SSGVIGMRMDKDEQIVGAAVVCHPEQD--------------------------------- 732

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              IL V+E G+GK+T +  ++   R GKG++   ++  ++ G 
Sbjct: 733 -------------------ILVVTEFGYGKKTQASFYKPQQRGGKGVKTLKIT--DKKGH 771

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRE 899
           LVA+  +  N+++IL+S  G +IR+  N++    S+ T+G  +F    D++++++  +++
Sbjct: 772 LVALKTIFPNEELILISQCGQVIRIEANKVSTTKSKNTEGNRLFKLKDDDKLLNLVVVQK 831

Query: 900 SEIVDEAES 908
            E  D  + 
Sbjct: 832 QEDDDSIDE 840


>gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
 gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
          Length = 838

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/839 (39%), Positives = 502/839 (59%), Gaps = 38/839 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +SI +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  + ++    KCA
Sbjct: 12  LIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA RYTE ++
Sbjct: 72  KIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +++D+ KDTVDF PN+D S QEP VL  ++P +L NG  GIAVGMATN+P HNL
Sbjct: 132 ARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+     A IDNPDI +D L + I+GPDFPTG +I G+ GI+ A+ TGRG I++RG  +
Sbjct: 192 REIAQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKILVRGRFN 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIEL 314
           IE     +E I+ TE+PYQVN  A++ KI EL REK I  IA + DE SDR G R+VIEL
Sbjct: 252 IEVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIEL 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA A V+LNQL+  T+LQS F V  +AL G +P+  TL  ++  FVA R+EVV RR +
Sbjct: 312 KRGAIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRVR 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +RAH+L  L +A+ N+DEV++IIR S +  +A+  LM+R              
Sbjct: 372 FDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMER-------------- 417

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                           +VQ +AI++++L RLT L  +D+R EL  L + I+   D+L+  
Sbjct: 418 ------------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHP 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L +IKQE   + ++    RRT IV + + ++  ED I +E MVV VS+LGY+KRVP+
Sbjct: 466 EKILALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPV 525

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y+ Q RGGKG +   + ++DF+  +F  STH  ++F ++ G  Y  KV  +P  S  +
Sbjct: 526 TAYKRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTS 585

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  + ++L+++  E ITTI+   E  S   + Y++ AT  G V++ +   F      G 
Sbjct: 586 RGSHIKSLLAVSSDEEITTIVSLKEFSS---DTYLLMATAGGIVKKVQTDSFQNAKTRGI 642

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+KLD  D+++S    T +++++L T+ GQ +R   + IR   GR S GV GI L+ GD
Sbjct: 643 IAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIR-DQGRASHGVIGIRLSGGD 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++     + +          Y K +        G     T  +   +V     E      
Sbjct: 702 ELTGALRINNGKLLVMSENGYGKRVDFSEFSPHGRG---TGGQKVYTVTEKTGEVVGLLA 758

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +  I+ ++ +G   R       +  R+ +G+R  D+   ++   L+ +  V   D+
Sbjct: 759 VADDDEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQ---LIGLDVVAREDE 814


>gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
 gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
          Length = 833

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/832 (40%), Positives = 510/832 (61%), Gaps = 40/832 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCARI G+ MGK
Sbjct: 1   METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IY AL  MAQ+W+ R  L++G GNFGS DGD  AA RYTE RL K +  ++ 
Sbjct: 61  FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+F PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL E ++  V 
Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180

Query: 205 VIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +IDN      D  ++ +MEII+GPDFPTGA ILGR  I+ AY TGRG I  R VS IE  
Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATILGRKDIEQAYRTGRGKIKTRAVSEIETM 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              + +I+VTE+PY VNKA ++EKIA LV+EK++  I DLRDESD++G RVVIE++R A+
Sbjct: 241 DNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDAN 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+VILNQLY++T LQ  F V M+AL   +P+   L+ +L  ++  +++VV RRTK+ LNK
Sbjct: 301 ANVILNQLYKHTQLQDSFGVIMLALVDGEPKVLNLLQMLDEYLKHQKDVVTRRTKFELNK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +RAH++ GL IA+ N+DEV++IIR S     A++ L++R                   
Sbjct: 361 AEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIER------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LS+ Q++AI+++RL +LTGL R+D+  E   L  +I     IL+  ++LL 
Sbjct: 402 -------FGLSDAQSQAIVDMRLRQLTGLAREDLEAEYADLMAKIDYLKSILADENKLLT 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +IK+E+  ++D+    RRT+I   + D+ DED I  ED VV +++LGY+KR+ +  +++Q
Sbjct: 455 VIKEEIEVIRDKFGDERRTKIGINVGDLSDEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGGKG  G+   D+DF+ D+F+VSTH  +LF ++ G +YK K + +P     ARG A++
Sbjct: 515 NRGGKGIKGMQTIDKDFMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L  GE+I+ ++   E E    + Y++ ATK G +++  +  +  I +SG  A+ L 
Sbjct: 575 NLLQLQPGEKISAMVQMKEFEE---DKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLR 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE++ V      ++I+L TK GQ ++F  + +R   GR+++GVRGI L + D+VISM 
Sbjct: 632 EDDELIDVTISDNNDNIMLITKKGQGIKFRETDVRE-TGRSAMGVRGIELNQDDEVISMQ 690

Query: 740 IVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           +    +           K        +     +       S   G   E    +      
Sbjct: 691 LESQGECVLIVSANGMGKRTPFTDFKLQNRGGKGVKCYKISDKTG---EVVGAKAVNDGN 747

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            I+ ++ +G   R    D  I  R   G++  +    ++I  + ++  V ++
Sbjct: 748 EIMMITNEGIVIRMFVDDISILGRVTLGVKLMNTGDKDDIV-VASITKVKES 798


>gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 858

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/855 (37%), Positives = 478/855 (55%), Gaps = 45/855 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M   G   N 
Sbjct: 22  EVEASRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNG 81

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNFGS     PAA+R
Sbjct: 82  GFSKCARVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQR 141

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 142 YTECKMAPLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 201

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL E+ D  +  ++NP+   + L    M+ I+GPDFPTGA ILGR GI++ Y TGR
Sbjct: 202 IPPHNLREIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 261

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSIV R V ++E+    R  +V TE+PYQVN   +L KIA+L ++ ++  IAD+RDE SD
Sbjct: 262 GSIVQRAVVNVEELH-GRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 320

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   +L G +  +V  
Sbjct: 321 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 380

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +  V+ RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 381 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMD----- 435

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 436 ---------------------LLSVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 474

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+  EL  + ++    R+T IV    +M  ED I  EDMVVT++ 
Sbjct: 475 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 534

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR  +  YR+QRRGGKG  G  +R++D V   F  S+H  +LFF++ G VY+ K +
Sbjct: 535 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 594

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++     E   +  Y+V ATK G V++  L+D
Sbjct: 595 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFE---DKEYLVLATKRGFVKKTHLTD 651

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
           +      G IA+KL        D+++S        D++L ++ GQ +RF  S  ++   G
Sbjct: 652 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMG 711

Query: 719 RNSVGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R++ GV G+     D++++M +V   AD        Y K        + G       + N
Sbjct: 712 RSTSGVTGMRFRDDDELLTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVAN 771

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                G +       +  +E  +L +   G   R+   +   + R+ +G+  +     + 
Sbjct: 772 LVEARGKL---VGALVTDEESEVLVIMAGGKIVRSRVDEVSKTGRNTQGVIFSRADGDDR 828

Query: 838 IGALVAVFPVNDNDQ 852
           + A+      + +++
Sbjct: 829 VIAVTLNVDNSGDEE 843


>gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
 gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
          Length = 836

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/886 (36%), Positives = 493/886 (55%), Gaps = 88/886 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T   + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM +G++ N+ Y K 
Sbjct: 10  RVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKS 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE MGKYHPHG++AIY+ + R+AQ+WS+R  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 70  ARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
             +    +L D+ +DTVD+ PN+D S +EP+ L +  PN+L+NG  GIAVGMATN+  HN
Sbjct: 130 FAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD    +I  PD +LD LM  + GPDFPTG +I+GR GI +AY TGRG I++RG  
Sbjct: 190 LGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGRGKIILRGKC 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+E+ S  +  +V+TEIPY +NK  ++E I + V+ K+I  ++D+RDESDR+G R+V+EL
Sbjct: 250 HVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVVEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            R A A+++  QLY  TSLQS F +  +AL   KP    L  +L+ F+ +R  VV RRT+
Sbjct: 310 TREADAELVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYRRSVVRRRTQ 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  R H++ GL  A+  +D+V+ IIR +   + A+  L                 
Sbjct: 370 FRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGL----------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                     G +  +++Q +AIL++RL RLTGL R+ +  EL  L  +I+    IL + 
Sbjct: 413 ---------IGELAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNP 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
           S L G+I  EL  ++ +    RRT +   L    D        ED++VT+S  G+++R P
Sbjct: 464 SVLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSP 523

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  Q RGGKGR G V++D+D V  + + STH+ +  F+S G V+  +   +P     
Sbjct: 524 LENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETK-T 582

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+A+   +SL   ER+  +    E+ ++    +++F TK G  +R    +   + R+G
Sbjct: 583 GKGRAVSKFVSLTDDERVVAMRGTLEETATS---HLLFITKRGIGKRMDAEELENLTRAG 639

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  + LD  DEI ++      + +LL T   +      S  R    R + GV+ + LA  
Sbjct: 640 RRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPMG-RAARGVKAMKLAPD 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D++I+   V   +                                               
Sbjct: 699 DRIIAAWTVAPDEN---------------------------------------------- 712

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VSE G GKRT   +F I +R   G++A  +      G L A   V  +D+
Sbjct: 713 -------LLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGAR--TGRLAAAVGVASSDE 763

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + L+++KG +IR+  ++I + SR   G ++      + + SV  I 
Sbjct: 764 VGLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVIP 809



 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 85/235 (36%), Gaps = 10/235 (4%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+   A      D +       +E+ ++  +K G   R P+    +   R   G  G  
Sbjct: 485 RRTELSAALPTEGDSLED--LLPEEDILVTLSKDGFLRRSPLENYNL-QNRGGKGRLGAV 541

Query: 729 LAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L   D+V  MA+       +    R                      S     + +  + 
Sbjct: 542 LKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETKTGKGRAVSKFVSLTDDERVV 601

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
             R    +     +L ++++G GKR  + +     R+G+ + +      ++   + A+  
Sbjct: 602 AMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSL-----DDGDEIAAIID 656

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + N +++LV+ K     V  +E R   RA +GV     A D+R+++   +   E
Sbjct: 657 TDGNSKVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKLAPDDRIIAAWTVAPDE 711



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 15/208 (7%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  G  KR+         R G+    + + D D +  +     ++ VL  +S       
Sbjct: 618 ITKRGIGKRMDAEELENLTRAGR--RVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHV 675

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
                      ARG   +  + L   +RI        DE+      ++  ++ G  +R K
Sbjct: 676 DESEFRPMGRAARG---VKAMKLAPDDRIIAAWTVAPDEN------LLLVSETGIGKRTK 726

Query: 662 LSDFI--QINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
             +F        G  AM L +R   + +       +++ L T+ G+ +R   S I + + 
Sbjct: 727 PEEFPIHHRGSGGVQAMHLGARTGRLAAAVGVASSDEVGLMTEKGRMIRLSASDIPLLS- 785

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADA 746
           R + G   + L  GD + S++++    A
Sbjct: 786 RTATGSIVLRLNDGDLLASVSVIPAPMA 813


>gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
 gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
          Length = 804

 Score =  667 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     + +IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKRVK-RIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTK 374
           +  S +VI+N LY+ T+LQ  F+V M+ ++ + +P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GK 673
           G+ +   L+L   E+I  +     D        +V  TK G ++R  L +F     + G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGD-----GNDLVIVTKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E   +++ TK+G  VRFP+S +R    RN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMG-RNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   D                                               
Sbjct: 692 DEVVSVDVIPPGD----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score = 97.7 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 15/247 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+      +   +E    E   +E+ ++  +  G     P+++ R    R   G+   
Sbjct: 478 PRRTEITDQSIQYNEE----ELIVEEDVVITLSHNGYLKSTPLNSYRS-QKRGGKGITVS 532

Query: 728 SLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L + D+V  + +  +  +  +   +     +   +   +G       +    ++E    
Sbjct: 533 KLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEK 592

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
                 L      ++ V++ G  KRT+  +F    SNR    +RA  +   +E   +V+ 
Sbjct: 593 IVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRG---VRAIKIEPGDE---IVSA 646

Query: 845 FPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             VN   + ++V +  G  +R PV+++R   R   GV        + VVSV+ I   +  
Sbjct: 647 RVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGDEG 706

Query: 904 DEAESTE 910
           +    TE
Sbjct: 707 EILTVTE 713


>gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
 gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
          Length = 804

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     + +IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKRVK-RIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTK 374
           +  S +VI+N LY+ T+LQ  F+V M+ ++ + +P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GK 673
           G+ +   L+L   E+I  +     D        +V  TK G ++R  L +F     + G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGD-----GNDLVIVTKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E   +++ TK+G  VRFP+S +R    RN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMG-RNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   D                                               
Sbjct: 692 DEVVSVDVIPPGD----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 95/247 (38%), Gaps = 15/247 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+      +   +E    E   +E+ ++  +  G     P+++ R    R   G+   
Sbjct: 478 PRRTEITDQSIQYNEE----ELIVEEDVVITLSHNGYLKSTPLNSYRS-QKRGGKGITVS 532

Query: 728 SLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L + D+V  + +  +  +  +   +     +   +   +G       +    ++E    
Sbjct: 533 KLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEK 592

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
                 L      ++ V++ G  KRT+  +F    SNR    +RA  +   +E   +V+ 
Sbjct: 593 IVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRG---VRAIKIEPGDE---IVSA 646

Query: 845 FPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             VN   + ++V +  G  +R PV+++R   R   GV        + VVSV+ I   +  
Sbjct: 647 RVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGDEG 706

Query: 904 DEAESTE 910
           +    TE
Sbjct: 707 EILTVTE 713


>gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1]
 gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1]
          Length = 804

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     + ++V+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKRVK-RVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTK 374
           +  S +VI+N LY+ T+LQ  F+V M+ ++ + +P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GK 673
           G+ +   L+L   E+I  +     D        +V  TK G ++R  L +F     + G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGD-----GNDLVIVTKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E   +++ TK+G  +RFP+S +R    RN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMG-RNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   +                                               
Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 95/247 (38%), Gaps = 15/247 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+      +   +E    E   +E+ ++  +  G     P+++ R    R   G+   
Sbjct: 478 PRRTEITDQSIQYNEE----ELIVEEDVVITLSHNGYLKSTPLNSYRS-QKRGGKGITVS 532

Query: 728 SLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L + D+V  + +  +  +  +   +     +   +   +G       +    ++E    
Sbjct: 533 KLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEK 592

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
                 L      ++ V++ G  KRT+  +F    SNR    +RA  +   +E   +V+ 
Sbjct: 593 IVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNRG---VRAIKIEPGDE---IVSA 646

Query: 845 FPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             VN   + ++V +  G  IR PV+++R   R   GV        + VVSV+ I   E  
Sbjct: 647 RVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEG 706

Query: 904 DEAESTE 910
           +    TE
Sbjct: 707 EILTVTE 713


>gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
 gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
          Length = 857

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/855 (37%), Positives = 475/855 (55%), Gaps = 45/855 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   N 
Sbjct: 21  EAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 80

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KC R+ G+V+G +HPHG+A++YDALAR+ Q WS+R  L+ GQGNFGS     PAA R
Sbjct: 81  GFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 141 YTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV D     +++P+   + L    M+ I+GPDFPTGA ILGR GI++ Y TGR
Sbjct: 201 IPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 260

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSIV R V ++E+    R  +V TE+PYQVN   +L KIA+L ++ ++  IAD+RDE SD
Sbjct: 261 GSIVQRAVVNVEELH-GRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 319

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   +L G +  +V  
Sbjct: 320 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 379

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +  V+ RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 380 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMD----- 434

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 435 ---------------------LLSVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 473

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+  EL  + ++    R+T IV    +M  ED I  EDMVVT++ 
Sbjct: 474 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 533

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR  +  YR+QRRGGKG  G  +R++D V   F  S+H  +LFF++ G VY+ K +
Sbjct: 534 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 593

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++     E   +  Y+V ATK G V++  L+D
Sbjct: 594 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFE---DKEYLVLATKRGFVKKTHLTD 650

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AG 718
           +      G IA+KL        D+++S        D++L ++ GQ +RF  S  ++   G
Sbjct: 651 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMG 710

Query: 719 RNSVGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R++ GV G+     D++++M +V   AD        Y K        + G       + N
Sbjct: 711 RSTSGVTGMRFRDDDELLTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVAN 770

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                G +       +  +E  +L +   G   R+   +   + R+ +G+  +     + 
Sbjct: 771 LVEARGKL---VGALVTDEESEVLVIMAGGKIVRSRVDEVSKTGRNTQGVIFSRADGDDR 827

Query: 838 IGALVAVFPVNDNDQ 852
           + A+      + +++
Sbjct: 828 VIAVTLNVDNSGDEE 842


>gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 832

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/889 (39%), Positives = 522/889 (58%), Gaps = 88/889 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL  M +     ++ YVKC
Sbjct: 29  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 88

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEV+G YHPHG+A++Y+AL RM QD+SLR+ LI+GQGNFGS+DGD PAA RYTE R
Sbjct: 89  AKIVGEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 148

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K A  LL D+ K+TV F PNYD + Q+P VL A +PN+LVNG  GIAVGMATNIP HN
Sbjct: 149 LEKVAEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 208

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E +D  +AVI NP+I +  ++ II GPDFPT  +I+G  G+ +AY TG+GSI IR   
Sbjct: 209 LKETIDAVIAVIRNPEITIPEILRIIPGPDFPTSGIIIGGEGLISAYTTGKGSIRIRSKV 268

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    RE IVVTEIPYQVNK  +LEKI ++V EK+I  I+++ D SDR+G R+ I +
Sbjct: 269 EIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIHI 328

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A VILNQLY+ T LQ  + + M+A+   KP+ F +  IL A+ A R +V+V+RT+
Sbjct: 329 KKDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYSAHRRDVIVKRTQ 388

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  RAH+L GL IA+ N+++V+++IR S NP  A+++LM R              
Sbjct: 389 FDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVR-------------- 434

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSEVQ+ AILE+RL RLT L    I +EL  +   I +  DIL+  
Sbjct: 435 ------------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIVDLKDILAKP 482

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGYVKRV 551
           SR+  I+  EL  V D+  T R+T I    ++    +       E+MV+ +++  ++KR+
Sbjct: 483 SRINDIVCTELQEVGDKYGTKRKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRL 542

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  ++ Q+RGGKG  G+  + +D +  +    TH S++FFS++G VY  K + LPI S 
Sbjct: 543 PIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASK 602

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +ARGK+L  I++L + E +++I  F   +   +   ++  TK G ++R +L +F  + +S
Sbjct: 603 EARGKSLKAIINLREDEYVSSIFTFRGQDMDKD---LLLVTKRGFIKRIQLKEFGNVKKS 659

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ VE    ++++++ +K G  +R   + IR   GR + GV G+ LA+
Sbjct: 660 GIIAIGLREGDELIKVEAIEDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAE 718

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D ++ ++                                                    
Sbjct: 719 DDTIVGLS---------------------------------------------------- 726

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               + + I  VSE+G+GKR    +F    R GKG+    V++ N  G  V    V   D
Sbjct: 727 -KYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKVTEKN--GFSVGTGSVGSED 783

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++IL++ +G  IR+   +I    R   GV I     +++V     + E+
Sbjct: 784 EVILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKVQDFTVLGEN 832



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 9/218 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  T      R PI   +    R   G++G+S  + D +  M   +  D+  
Sbjct: 523 LIADEEMVIQITYDQFIKRLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIM 581

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y+               +      +   +  +S       +  ++ +L V++
Sbjct: 582 FFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYVSSIFTFRGQDMDKDLLLVTK 641

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +GF KR    +F    +SG  I A  + + +E   L+ V  + D D++++ S KG  +R+
Sbjct: 642 RGFIKRIQLKEFGNVKKSG--IIAIGLREGDE---LIKVEAIEDKDEVMIFSKKGLALRI 696

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             N IR   R   GV     A+D+ +V + + +E E +
Sbjct: 697 EGNIIRAQGRTASGVTGMRLAEDDTIVGLSKYKEGEDI 734



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 6/176 (3%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D++  +  ++    D   +   +  +        GD          S      S    ++
Sbjct: 463 DELEEVRKLIVDLKDILAKPSRINDIVCTELQEVGDKYGTKRKTEISIESIESSSFNAED 522

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+ ++ ++   F KR     F+   R GKGI+     + + I  + A      +D 
Sbjct: 523 LIADEEMVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMT---HDS 579

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
           I+  S+ G +  +   E+ IAS+  +G  +    +  +DE V S+   R  ++  +
Sbjct: 580 IMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYVSSIFTFRGQDMDKD 635


>gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans]
 gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 834

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/889 (39%), Positives = 528/889 (59%), Gaps = 88/889 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL  M +     ++ YVKC
Sbjct: 31  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 90

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEV+G YHPHG+A++Y+AL RM Q++SLR+ LI+GQGNFGS+DGD PAA RYTE R
Sbjct: 91  AKIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 150

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K A  LL D+ K+TV F PNYD + ++P VL A +PN+LVNG  GIAVGMATNIP HN
Sbjct: 151 LEKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 210

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E +D  +AVI NP+I +  +++II GPDFPT  +I+G  G+ +AY+TG+GSI IR   
Sbjct: 211 LRETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIGGEGLISAYSTGKGSIRIRSKV 270

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    RE IVVTEIPYQVNK  +LEKI +LV EK+I  I+++ D SDR+G RV I +
Sbjct: 271 EIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHI 330

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A VILNQLY+ T LQ  + + M+A+   KP+ F +  IL A+ A R EV+VRRT+
Sbjct: 331 KKDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYAAHRREVIVRRTQ 390

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  RAH+L GL IA+ N+++V+++IR S NP  A+++LM R              
Sbjct: 391 FDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIR-------------- 436

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSEVQ+ AILE+RL RLT L    I +EL  +   I +  DIL+  
Sbjct: 437 ------------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKP 484

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRV 551
           SR+  I+  EL  V D+    R+T I    ++      ED I  E++V+ +++  ++KR+
Sbjct: 485 SRVNEIVCTELQEVGDKYGNKRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRL 544

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  ++ Q+RGGKG  G+  + +D +  +    TH +++FFS++G VY  K + LPI S 
Sbjct: 545 PIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASK 604

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +ARGK+L  I++L + E I+++  F  ++   +   ++  T+ G ++R +L +F  + +S
Sbjct: 605 EARGKSLKAIINLREDEYISSVFTFRGEDMDKD---LLLVTRKGFIKRIQLKEFGNVKKS 661

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ VE+ T ++++++ +K G  +R   + IR   GR + GV G+ LA+
Sbjct: 662 GIIAIGLREGDELIKVESMTDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAE 720

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D ++ ++                                                    
Sbjct: 721 DDAIVGLS---------------------------------------------------- 728

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               + + I  VSE+G+GKR    +F    R GKG+    +++ N  G  V    V   D
Sbjct: 729 -KYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKN--GFSVGTGSVGSED 785

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +IIL++ +G  IR+   +I    R   GV I     +++V     + E+
Sbjct: 786 EIILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKVQDFTVLGEN 834



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 9/218 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  T      R PI   +    R   G++G+S  + D +  M   +  D   
Sbjct: 525 LIADEEIVIQITYDQFIKRLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMTHDNIM 583

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y+               +      +   +  IS       +  ++ +L V+ 
Sbjct: 584 FFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISSVFTFRGEDMDKDLLLVTR 643

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KGF KR    +F    +SG  I A  + + +E   L+ V  + D D++++ S KG  +R+
Sbjct: 644 KGFIKRIQLKEFGNVKKSG--IIAIGLREGDE---LIKVESMTDKDEVMIFSKKGLALRI 698

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             N IR   R   GV     A+D+ +V + + +E E +
Sbjct: 699 EGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGEDI 736



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 6/176 (3%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D++  +  ++    D   +   +  +        GD          S      S    ++
Sbjct: 465 DELEEVRKLIIDLKDILAKPSRVNEIVCTELQEVGDKYGNKRKTEISIETIESSSFNAED 524

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+ ++ ++   F KR     F+   R GKGI+     + + I  + A      +D 
Sbjct: 525 LIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMT---HDN 581

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
           I+  S+ G +  +   E+ IAS+  +G  +    +  +DE + SV   R  ++  +
Sbjct: 582 IMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISSVFTFRGEDMDKD 637


>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 809

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/888 (39%), Positives = 503/888 (56%), Gaps = 88/888 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+  ++ + K 
Sbjct: 7   KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
            RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R  ++ GQGNFGS+DGDPPAA RYTE +
Sbjct: 67  GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ K+TVDF PNYD S +EP VL A  P +L+NG  GIAVGMATNIP HN
Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV     AVIDNP+I    L+  ++GPDFPTG +I G+ GI++AY TG+G +V+R   
Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRARL 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     RE IVVTEIPY VNK+++LE++A LVR+K+I  I+++RDESDR G R+V EL
Sbjct: 247 SLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG    V++N+L+  T LQ+ F VN +AL G KP+  TL  I++ F++ R+EVV RR +
Sbjct: 307 KRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRRAQ 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA+ N+DEV+ II+ S   ++AR  LM+R              
Sbjct: 367 YDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL +LT L    I  EL +    I+E  ++L S 
Sbjct: 413 ------------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L ++K E L +  E    RRT IV E   D++ ED I +EDMVV VS  G +KR+P+
Sbjct: 461 RKILEVVKNETLELAKEYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPV 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR Q RGGKG  G  +  +D V+ LF+ STH  +LF S+ G  Y  KV  +P GS  +
Sbjct: 521 SAYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVS 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GK             I +++    DE                                 
Sbjct: 581 QGK------------SIRSLVQLSPDEQVSA----------------------------- 599

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
                     ++SVET  +E ++ + T  G   R P+      +   + GV  I L KGD
Sbjct: 600 ----------VVSVETFEEEREVFMITAKGLAKRLPV---PALSNARTRGVIAIGLEKGD 646

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++   +         E +   +     R           + +  ++V+    +E C  +
Sbjct: 647 YLVDAFLTE----GKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEVCGAV 702

Query: 794 KLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            ++E + +L V+  G+GKR     F    R  KG  A  VS     G L AV  V   D 
Sbjct: 703 PVEEGKDLLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSAR--TGELAAVLSVEAKDD 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++V+ +G +I++ V +I +  R   GV + +  K + VVSV+R+   
Sbjct: 761 VMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVARE 808



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ DE+++     +++  + + +     RF +S       R +  +  + L K  
Sbjct: 382 LKIALDNIDEVIA---IIKKSRTVDSARNNLMRRFGLSE------RQAQAILDMRLQKLT 432

Query: 734 QVISMAIVLHADADY---DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE-- 788
            + +  I+   +A     +E    +        ++  +T E+     D      ++EE  
Sbjct: 433 SLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKEYGDERRTEIVAEEAE 492

Query: 789 --RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               ++L  KE  ++ VS  G  KR     +R   R GKG+    +S  + +  L   F 
Sbjct: 493 DLDIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGKLSGDDVVSHL---FV 549

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIV 903
            + +D I+ +S++G    + V+EI   SR ++G     +   + DE+V +V  +   E  
Sbjct: 550 ASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSVETFEEE 609

Query: 904 DE 905
            E
Sbjct: 610 RE 611


>gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
 gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
          Length = 806

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/892 (36%), Positives = 515/892 (57%), Gaps = 93/892 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +  I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV  NK + K AR
Sbjct: 3   INRPIEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEVMGKYHPHG+AAIYD L R+AQDWS+R  L+EGQGNFGSVD DPPAA RYTE RL 
Sbjct: 63  IVGEVMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLS 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  LL+D+ K+T++   N+DGS +EP+VL +++PN+L NG  GIAVGM TNIP HN+ 
Sbjct: 123 KISEELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNIS 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+VDG +A+I NP I ++ L+E I GPDFPTG  I+GR GI+  Y TG+GS  IRG  H+
Sbjct: 183 ELVDGFLALIKNPQISIEELIEFIPGPDFPTGGEIIGRAGIREMYTTGKGSFTIRGKLHV 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+    +++IV+TEIPY V+KA +++KI E      +  I D+RDESD++G R+VIE+  
Sbjct: 243 EEDKK-KKKIVITEIPYNVSKADLIKKIVEYAENSSLQ-IKDIRDESDKEGLRIVIEIPN 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKY 375
             + D+I+N LY++T LQS F   ++ ++   +P    L  ++ AFV  R EVV +R ++
Sbjct: 301 NVNEDIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              +   +AH+L GL  A  ++D ++ +IR S +  +A +ELM+                
Sbjct: 361 FYKQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELMEM--------------- 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q +AI++LRL RLT L    +  + N L  ++K   +++    
Sbjct: 406 -----------FDFTETQAKAIVDLRLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDE 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++   I +EL  +K +    R++ I    E  +   + + I  +++V++++  GY+K + 
Sbjct: 455 KVYEKIIEELTYIKAQYGDSRKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS +R Q+RGGKG +G  + ++D + ++     H   LFF+S G VY    +++   S  
Sbjct: 515 LSTFRTQKRGGKGVTGSSLMNDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRT 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++GK +   +++++ E+I T++             + F TK G V+R  L DF  IN  G
Sbjct: 575 SKGKHISKYINIDKDEKILTMLSVDNFVGE-----LFFVTKFGKVKRTSLKDFENINARG 629

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+  D  D ++SV+    E   IL+ TK G  +RFPIS +R    R+++GV GI L+K
Sbjct: 630 LRAINFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTMG-RSAMGVTGIKLSK 688

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+S A++ +                                                
Sbjct: 689 DDKVVSSALLSND----------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E +ILTV+  G+GK T +  +RI  R+G GI+  ++S +++ G +V+V  V  N+
Sbjct: 702 -----ENYILTVTSLGYGKLTETSQYRIQKRAGLGIK--NISDVSKTGYVVSVSYVLGNE 754

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            I++ +  G  I++ ++ +R   R TKGV + + ++ +++  +  I   E V
Sbjct: 755 DIMIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADIAIISGEEDV 806


>gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922]
 gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922]
          Length = 864

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/842 (40%), Positives = 508/842 (60%), Gaps = 43/842 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N+ Y
Sbjct: 5   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD + RMAQ WSLR LL++GQGNFGSVDGD PAA RYT
Sbjct: 65  KKSARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RLQK +  LL D+ K+TVDF+ N+D +  EP VL  R P +LVNG  GIAVGMATN+ 
Sbjct: 125 EARLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMA 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG VA IDN DI +D L + I  PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 185 PHNLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIYGYDGVKQAFETGRGRVVMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             ++ E+    R+ I+VTEIPYQVNKA M+ K A+L+++ ++  IA++RDESDRQG R+V
Sbjct: 245 AKANFEEVH-GRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK  A  +V+LNQLY++T LQS FS+N +AL   +PE+  L  +++ FV  R EVVVR
Sbjct: 304 YVLKMDAIPNVVLNQLYKFTQLQSSFSINNIALVNGRPEQLNLKDMIRHFVDHRHEVVVR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT++ L KA++RAH+L G         +LD  ++IIR S  PE AR  LM          
Sbjct: 364 RTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLMT--------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAILELRL  LTGL  D IR E   +   I+   
Sbjct: 415 -----------------AFDLSEIQARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLK 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILS       IIK+EL  +K +    RR+ I     D+  ED I  +++V+T+SHLGY+
Sbjct: 458 NILSDEDLRFSIIKEELEEIKRKYADERRSEIDYSGGDLNIEDLIPDDNVVLTISHLGYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL+ Y+ Q RGG G      RDEDF+  + + + H  +LFF+  G  +  +V+ +P 
Sbjct: 518 KRTPLTEYKKQSRGGVGNRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  ++G+A+ N++++   +++   +   +  DE   NN YV+  TK+G +++  L  + 
Sbjct: 578 GSKTSKGRAIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYS 637

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G  A+ +   D +L       ++ I++ TK G+ +RF    +R    R + GVRG
Sbjct: 638 RPRINGINAITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPMG-RTASGVRG 696

Query: 727 ISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           I+L   K ++VI M +V    +D +     +       +  S +    T+         N
Sbjct: 697 INLGDDKDNEVIGMIVV----SDMENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLN 752

Query: 785 ISEERCQ----ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           I+E+  +    E    +  ++ +++ G   RT   + R+  R+ +G++  ++ K +EI A
Sbjct: 753 ITEKTGKLIAIESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAA 812

Query: 841 LV 842
           + 
Sbjct: 813 IA 814


>gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 853

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 522/900 (58%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 40  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 450 ----------------TYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 554 KMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I 
Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNIT 670

Query: 670 RSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 671 KNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLR-DSGRTAIGVKGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 730 KLEEGHKIIGACFAFD-------------------------------------------- 745

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 746 ---------NNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N + I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 794 KNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 731

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/759 (42%), Positives = 480/759 (63%), Gaps = 34/759 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV   R + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMG-RTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                D+VI M  +   D + +  +   +    +R  I 
Sbjct: 695 DNDGQDEVIGMICI--KDLETESVMVVSEQGYGKRSEIE 731



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 52/272 (19%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQE 693
           F  ++   ++  ++  +  G ++R  L++F   NR G      +    D +  +   T  
Sbjct: 491 FNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMH 550

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           N ++  T+ G+C    +  I     +NS G    +L   D                    
Sbjct: 551 NTMMFFTQKGKCYWLKVYEI-PEGTKNSKGRAIQNLLNIDS------------------- 590

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                  +DS       +       +   ++L  ++KG  K+T 
Sbjct: 591 -----------------------DDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTL 627

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +    ++G            E  +++ V   N N++II+ +  G  IR     +R+ 
Sbjct: 628 LEQYSRPRQNGVNAITIR-----EDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM 682

Query: 874 SRATKGVVIFSTAKD--ERVVSVERIRESEIV 903
            R   GV   +   D  + V+ +  I++ E  
Sbjct: 683 GRTATGVRGITLDNDGQDEVIGMICIKDLETE 714



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 106/261 (40%), Gaps = 26/261 (9%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR +        R+  +    +  D+ DE++ +    +  +  +    G   RF ++ I
Sbjct: 360 IRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIA---GLIERFNLTEI 416

Query: 714 R-----VFAGRNSVGVRGISL-AKGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLIS 766
           +         R   G+    L A+ ++++  +A +    AD +     MK    + +   
Sbjct: 417 QSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKY 476

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           GD          S +  +  E   ++    +Q I+T+S  G+ KRT   +FR  NR G G
Sbjct: 477 GDERR-------SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883
                 ++  +   +  ++P   ++ ++  + KG    + V EI   ++ +KG     + 
Sbjct: 530 S---KGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLL 586

Query: 884 STAKDERVVSVERIRESEIVD 904
           +   D+ V +  R++  +  +
Sbjct: 587 NIDSDDSVTAYLRVKSLDDTE 607


>gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 868

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 522/900 (58%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 55  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 114

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 115 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 174

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 175 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 234

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 235 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 294

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 295 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 354

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 355 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 414

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------- 464

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 465 ----------------TYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 508

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 509 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 568

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 569 KMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 628

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I 
Sbjct: 629 SKQGKGIPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNIT 685

Query: 670 RSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 686 KNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLR-DSGRTAIGVKGI 744

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 745 KLEEGHKIIGACFAFD-------------------------------------------- 760

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 761 ---------NNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 808

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N + I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 809 KNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868


>gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 853

 Score =  663 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 523/900 (58%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 40  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 450 ----------------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 554 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I 
Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNIT 670

Query: 670 RSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 671 KNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLR-DSGRTAIGVKGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 730 KLEEGHKIIGACFAFD-------------------------------------------- 745

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 746 ---------NHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N++ I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 794 KNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 868

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 523/900 (58%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 55  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 114

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 115 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 174

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 175 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 234

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 235 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 294

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 295 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 354

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 355 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 414

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------- 464

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 465 ----------------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 508

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 509 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 568

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 569 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 628

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I 
Sbjct: 629 SKQGKGIPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNIT 685

Query: 670 RSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 686 KNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLR-DSGRTAIGVKGI 744

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 745 KLEEGHKIIGACFAFD-------------------------------------------- 760

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 761 ---------NHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 808

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N++ I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 809 KNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868


>gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 804

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/888 (36%), Positives = 491/888 (55%), Gaps = 88/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   SI +EMQ+SY+ YA++VI+GRA+PD RDGLKP  RRIL+ M ++    +++  K
Sbjct: 3   ENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEV+GKYHPHG+ A Y+ L RMAQD+S+  +L+EGQGN GSVDGDPPAA+RYTE 
Sbjct: 63  SARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +L D+ K++V F PN+D +  EPVVL ++ PN+++NG  GIAVG+ATNI  H
Sbjct: 123 RLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV     A +DN +I    L+  ++GPDFPTG ++     +  +Y  GRGS+ IR  
Sbjct: 183 NLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGRLIESYIKGRGSVTIRAR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IEK     E+IV+ EIPY VNKA+++EKI  LV+++ I  I+DLRDESD++G R+ IE
Sbjct: 243 VSIEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK   + D +LN LY++T LQ    V  VA+ G +     +  ++K FV  R  VV+ RT
Sbjct: 302 LKANTNPDYVLNALYKHTQLQITMPVMNVAVLGNRLLNLNIRDMIKIFVEHRFGVVINRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L  A  R H++ GL IA  ++D VV IIR S N   A+  LM +             
Sbjct: 362 NYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          ++E Q  AIL+++L++LT L  ++++ E   L   I     +L S
Sbjct: 409 -------------YGITEAQAAAILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGS 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + ++  IIK E   + ++    RRT I    L+++E+ED I  ED ++ ++  GY+KR+P
Sbjct: 456 KEKVYQIIKDETKEIAEKYGIDRRTAIETSELVEIENEDLIKDEDSIIILTKDGYMKRLP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + VY+ Q RGG+G   + +++ DFV  +    T   +L  +S G VY  K + +P G   
Sbjct: 516 MDVYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRY 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+GKA +N++S+ +GERI  I+   +     +   ++FAT+ G ++  K   F +   +G
Sbjct: 576 AQGKAAVNLISIAEGERIEQIINTRDF----SGKNLIFATRRGRIKSTKAELFSRPRANG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+KL+  D ++ V   T  +++ L T+ G+ +RF  S +R    R + GVRGI L   
Sbjct: 632 IRAIKLNEDDIVVGVCLSTGGSNVFLATRNGKAIRFMESDLRHMG-RVASGVRGIRLKPN 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+++ + +                                                    
Sbjct: 691 DELVDVVVADP------------------------------------------------- 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               ++ I+T++E+G+GK T    +R+  R G G+    V++  + G +V V     +D 
Sbjct: 702 ----KKNIITITERGYGKATLLERYRLQRRGGGGVINLKVTE--KTGKVVRVLDGEQDDN 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +I+ + KG  IR   N IR+  R   GV +     D +VV  + + + 
Sbjct: 756 VIIFNSKGLSIRFNANAIRVTGRNASGVRLMKLEADAKVVDAQIVGKE 803



 Score = 44.5 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + D D II+++  G + R+P++  +   R  +GV+     + + V  V R    +
Sbjct: 496 IKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKD 550


>gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
 gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
          Length = 822

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/840 (39%), Positives = 516/840 (61%), Gaps = 34/840 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  + +    +  V I+ EM+ ++L Y+++VI+ RA+PD+RDG+KPVHRRIL  M Q+G+
Sbjct: 1   MEEENKRYDYVEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R  L++G GNFGS+DGD  
Sbjct: 61  TSGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  ++ D+ KDTVDF PNYDG   EPVVL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL E +    AV+DNPDI +  LME+I+GPDFPTG +ILGR GI+ A+ TGR
Sbjct: 181 MATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIILGRKGIRQAFETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI+IR    +E+ +  ++QI+  EIPYQVNKA ++ K+A L+R+K I  +  L DES+R
Sbjct: 241 GSIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+ A  +VILNQL+R T LQ+ F +NM+AL   +P++  L  I+  ++  +
Sbjct: 301 EGIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLALENGRPKQLPLKDIIHDYIDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +VVVR+T++ L KA+DRAH+L GL IA+ ++DEV+ +IR S                  
Sbjct: 361 VDVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKK---------------- 404

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                    D++  +        LS +Q +AIL ++L RL+GL RD I NE   L + I+
Sbjct: 405 ---------DEAGLSQDLCDAFGLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIE 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL++  R+L II+ +L  +  +    RRT I +  +DMEDED I  ED+++T++  
Sbjct: 456 DLKDILANHDRVLQIIRDDLNEIDQKYGDERRTEISDASVDMEDEDLIPVEDVIITLTES 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  +  YRAQ RGG+G   + + +ED +  +  +STH  +L F+  G VY+ K + 
Sbjct: 516 GYIKRQLVDTYRAQNRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYN 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  ++G  ++N+++L +GE++  ++  P+D+ S     ++F TK+G V+R  +S+F
Sbjct: 576 VPSGSRTSKGIPIVNLMTLEKGEKVNVLVAVPKDDESE---TLLFVTKNGIVKRTSVSEF 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             INR+GKIA+ L   DE+  V+  T +++++++   G+ VRF    +R+   R++ GV 
Sbjct: 633 ENINRNGKIAISLKPDDELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIMG-RSASGVL 691

Query: 726 GISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G +   G +V+  A+    D         Y K    +   ++   ++  S  N +   G 
Sbjct: 692 GFN-CDGSEVVGAALSSEGDTVLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITEKTGK 750

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +   R    K      + V+  G   R +  +  I  R+ +G+R  +++   ++  +  V
Sbjct: 751 LMCMRAVTGKEDA---MIVASDGIMIRVALENVGIYGRNTQGVRLINLNGDAKVTRMTLV 807


>gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
          Length = 809

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/888 (39%), Positives = 501/888 (56%), Gaps = 88/888 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+  ++ + K 
Sbjct: 7   KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
            RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R  ++ GQGNFGS+DGDPPAA RYTE +
Sbjct: 67  GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ K+TVDF PNYD S +EP VL A  P +L+NG  GIAVGMATNIP HN
Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV     AVIDNP+I    L+  ++GPDFPTG +I G+ GI++AY TG+G +V+R   
Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRARL 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     RE IVVTEIPY VNK+++LE++A LVR+K+I  I+++RDESDR G R+V EL
Sbjct: 247 SLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG    V++N+L+  T LQ+ F VN +AL G KP+  TL  I++ F++ R+EVV RR +
Sbjct: 307 KRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRRAQ 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +RAH+L GL IA+ N+DEV+ II+ S   ++AR  LM+R              
Sbjct: 367 YDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL +LT L    I  EL +    I+E  ++L S 
Sbjct: 413 ------------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L ++K E L +       RRT IV E   D++ ED I +EDMVV VS  G +KR+P+
Sbjct: 461 RKILEVVKNETLELAKGYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPV 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YR Q RGGKG  G  +  +D V+ LF+ STH  +LF S+ G  Y  KV  +P GS  +
Sbjct: 521 SAYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVS 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GK             I +++    DE                                 
Sbjct: 581 QGK------------SIRSLVQLSPDEQVSA----------------------------- 599

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
                     ++SVET  +E ++ + T  G   R P+      +   + GV  I L KGD
Sbjct: 600 ----------VVSVETFEEEREVFMITAKGLAKRLPV---PALSNARTRGVIAIGLEKGD 646

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++   +         E +   +     R           + +  ++V+    +E C  +
Sbjct: 647 YLVDAFLTE----GKGEVMIVTRRGHGLRCKEEEFRSMGRAARGVTAVKLEPGDEVCGAV 702

Query: 794 KLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            ++E + +L V+  G+GKR     F    R  KG     VS     G L AV  V   D 
Sbjct: 703 PVEEGKDLLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSAR--TGELAAVLSVEAKDD 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++V+ +G +I++ V +I +  R   GV + +  K + VVSV+R+   
Sbjct: 761 VMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVARE 808



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 22/242 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ DE+++     +++  + + +     RF +S       R +  +  + L K  
Sbjct: 382 LKIALDNIDEVIA---IIKKSRTVDSARNNLMRRFGLSE------RQAQAILDMRLQKLT 432

Query: 734 QVISMAIVLHADADY---DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE-- 788
            + +  I+   +A     +E    +        ++  +T E+     D      ++EE  
Sbjct: 433 SLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGYGDERRTEIVAEEAE 492

Query: 789 --RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               ++L  KE  ++ VS  G  KR     +R   R GKG+    +S  + +  L   F 
Sbjct: 493 DLDIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGKLSGDDVVSHL---FV 549

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIV 903
            + +D I+ +S++G    + V+EI   SR ++G     +   + DE+V +V  +   E  
Sbjct: 550 ASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSVETFEEE 609

Query: 904 DE 905
            E
Sbjct: 610 RE 611


>gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8]
 gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II
           subunit A
 gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/887 (38%), Positives = 530/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     + +IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKRVK-RIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTK 374
           + A+ +VI+N LY+ T+LQ  F+V M+ ++ + +P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+AR+ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT + +  ++  +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +    +S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GK 673
           G+ +   L+L   E+I  +              +V ATK G ++R  L +F     + G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLN-----GEGRDLVIATKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E   +++ TK+G  +RFP+S +R    RN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMG-RNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   +                                               
Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+      ++  +E    E   +E+ ++  +  G     P+++ R    R   G+   
Sbjct: 478 PRRTEVTDQSIEYNEE----ELIVEEDVVITLSHKGYLKSTPLNSYRS-QKRGGKGITVS 532

Query: 728 SLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L++ D+V  + +  +  +  +   +     +   +   +G       +    ++E    
Sbjct: 533 KLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEK 592

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
                 L  + + ++  ++ G  KRT+  +F    SNR    +RA  +   +E   +V+ 
Sbjct: 593 IVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRG---VRAIKIEPGDE---IVSA 646

Query: 845 FPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             VN   + ++V +  G  IR PV+++R   R   GV        + VVSV+ I   E  
Sbjct: 647 RVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEG 706

Query: 904 DEAESTE 910
           +    TE
Sbjct: 707 EILTVTE 713


>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
 gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
          Length = 820

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/895 (36%), Positives = 503/895 (56%), Gaps = 97/895 (10%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA+++ILGRA+PD RDG+KPVHRRIL+ M  +G+  +  Y KCAR+ GEV+GKYHPHG
Sbjct: 1   MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGK 148
           + A+YDAL R+AQ +S  + LI+G GNFGS+D DP AA RYTECRL +  A  LLDD+  
Sbjct: 61  DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTV+F PN+DGS  EP VL A+ P +L+NGG GIAVGMATN+P HNLGE++D CVA+   
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180

Query: 209 PDIDLDA-----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE------ 257
            +   +      L++II  PDFPTGA I+G++G ++ Y TG G +V+R V H+E      
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            K    R  I+VTE+PYQVNKAA+LE+IA LV EK++  IADLRDESDR G R+VIELKR
Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRTK 374
            A A V+ N L + TSLQ+ FS N +AL G    P+RFTL   L  F+ FR + +  +  
Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+K  +RAH++ GL IA+ + DEV+ I+R +P+  +AR  LM                
Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMST-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                    +  + LS  Q  A+L+L+L +LT L  D + +E  +L        ++L++ 
Sbjct: 407 --------DNPKLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTND 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +   + +E +++K    TPR+T+I+    D  D D +  E  V+ V+  GY+KR+PL 
Sbjct: 459 AAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLK 518

Query: 555 VYRAQRRGGKGRSG--VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            + +Q RG +G+ G    + D++ V   F  + H +VL  +  G  Y  + +++P G   
Sbjct: 519 TFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG  + ++L +   + IT+++P  E      N ++V AT++G +++  L+ F ++ + G
Sbjct: 579 ARGAPIPSVLPVKSDDVITSVLPVSE---FSKNEFIVLATEYGWIKKTPLAAFEKLTQRG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I   L   D +   E CT  +DIL+ +  GQ  RF  + +R    R S GV+ ++L KG
Sbjct: 636 LIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRP-TARTSRGVKSMTLKKG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D +  M ++   D                                               
Sbjct: 695 DTIADMNVLRKED----------------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                +F+L V+ +G+GKR  + +FR + R G G+ A           +  +  VN++D+
Sbjct: 708 -----KFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDE 762

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEIVDE 905
           I+L++ +G ++R  V++I    RA  GV++        + + +V  + + +   +
Sbjct: 763 ILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSIVPKEDADGD 817


>gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8]
          Length = 829

 Score =  662 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/848 (36%), Positives = 489/848 (57%), Gaps = 38/848 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  +  +   E      +SI  EM+ S++ YA++VI+ RAIPD+RDGLKPVHRR L+ M
Sbjct: 1   MTSEVPPAGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG   +K   K AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R  L++GQGNFGSV
Sbjct: 61  WDMGNTSDKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL+DL K+TV+F PNYD S +EP VL ++ PN+LVNG  
Sbjct: 121 DGDAAAASRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTD 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT +P HNL EV       +D P + ++ L++I+ GPDFPTG +++G  G+KN 
Sbjct: 181 GIAVGMATKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILMGVDGVKNI 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           YATG+G IV+RGV+ IE++ G    ++I+VTE+PYQVNKA  +  IA++V++K++  I+D
Sbjct: 241 YATGQGRIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESD+ G RVV EL++G  + VILN LYR+T+L+S FS   +A+    P+   L  +L
Sbjct: 301 IRDESDKDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVDGTPKLLNLPALL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EV+ RR+++ L K ++R H+L GL  A+A++D+++  IR S   + AR  L+
Sbjct: 361 GNFVHHRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALI 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L E+Q  AIL+++L RL  L +  I +E +
Sbjct: 421 S--------------------------GFGLDELQANAILQMQLRRLAALEQQKIVDEKS 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           +L  EI +   IL+S   +   I++E   +  +    RRT I     D+  ED I  + +
Sbjct: 455 TLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLSTEDLIEDKTV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V+++   Y+KR+ L  YR QRRGG G +G+  +++D V+ +F       +L F+++G V
Sbjct: 515 LVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDVVSSVFAAGMKDYLLCFTNIGRV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+++P  S  A+GK ++N+L+L + E +TT++P  E      + Y++FAT+ G V 
Sbjct: 575 YWLKVYQIPESSRIAKGKPIVNLLNL-KDEVVTTVIPIREFR---KDRYLLFATQLGQVI 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +    +F     +G  A++L   D+++ V T     +++L+T+ G  +RF    +R+   
Sbjct: 631 KIPQDEFSFPRSTGTNAIRLRENDKLVDVITTDNTKEVVLSTRFGYGLRFHEDTVRIVG- 689

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV G+ L   D ++++ +V     + D  +        +R           +    
Sbjct: 690 RGASGVIGMRLRGNDTIVALTLV-----EKDHLLSITDAGFGKRTEFDDFRGHGRATMGV 744

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            +++                 I  ++  G   RTS    RI+ R  KG++   + + +++
Sbjct: 745 KNMQVERDVVIHSRAVADTDEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDKV 804

Query: 839 GALVAVFP 846
             +  V P
Sbjct: 805 IGVAIVTP 812


>gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 835

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 542/908 (59%), Gaps = 90/908 (9%)

Query: 1   MTEHIISSDE------EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++H   ++E       +   I  V++++EM+ S+L+YA++VI+ RA+PD++DGLKPV R
Sbjct: 1   MSDHKTQNNEANIHKPHDHGKIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++GV  +  Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++G 
Sbjct: 61  RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K A  L+ ++ K+T+DF  NYDG+ +EP+VL    PN+
Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IPTHNLGEV+DG +  I+N DI +D LM+ I+GPDFPTG  +LG 
Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +K+AY TG+G+++++  SH+      +  I+VTEIPYQV K  ++EKIA LV+ K + 
Sbjct: 241 QSLKSAYHTGQGAVILKAKSHV-LEERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDES R+G ++VIELKR A+A +ILN+LY+++ L+  F +NMVAL G  P+  +L
Sbjct: 300 GITDLRDESSRKGMKIVIELKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+AF  FR EV+ R+  + L KA  R H++  L   + +++  +++I+ S + + A+
Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQ 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           R+LMQ+                              E+Q++AILE+ L RL+      + 
Sbjct: 420 RKLMQK--------------------------YNFDEIQSKAILEMSLQRLSNQETQKLI 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCI 533
            E  +L  EI EC  I+ S+ +   I+++ELL +K +    R+T +  +  L+ EDED I
Sbjct: 454 TEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ++ +++T+++ GY+K + +  Y+ Q+RGG+G SG+ + +EDF+  L I STH   LFF+
Sbjct: 514 EKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + +P+G  Q++G  L+N L   + E +T+       + S +  Y+ FATK
Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQD--YLFFATK 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L ++  I++ G IA++L   DE+L+V+  T   +I+L +  G  + F  + I
Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKI 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  + RNS+GV G+ L   + ++  A+                                 
Sbjct: 692 KSIS-RNSMGVIGMRLGSDEFLVGAALF-------------------------------- 718

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                             ++  KEQ IL ++E GFGK T+   +RI  RSGKG +   V+
Sbjct: 719 ------------------DVDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVN 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVV 892
             ++ G L+ +  V  +D +I+ SDKG ++RV +++I     +AT+G  I       + V
Sbjct: 761 --DQKGRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818

Query: 893 SVERIRES 900
           SV  +++ 
Sbjct: 819 SVAVVKKE 826


>gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 816

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/904 (38%), Positives = 499/904 (55%), Gaps = 90/904 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +        +   +  + + +EM+ S+L Y+++VI+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MPDEPTP----DASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ +VKCA++ G+VM ++HPHG+AAIYDAL RMAQD+SL   LI+G GNFGS 
Sbjct: 57  YDAGYRPDRPHVKCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSP 116

Query: 121 DG-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D    PAA RYTECRL   A  LL  + +DTVDF PNYD    EP VL AR+PN+LVNG 
Sbjct: 117 DPSTGPAASRYTECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGS 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT IP+HNLGEVVD    +ID+P+  +D LM  + GPDFPTG +ILGR GI++
Sbjct: 177 QGIAVGMATQIPSHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRD 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ +R V+ IE+      QIVVTEIP+Q +   + +KI  LV EK +  I D+
Sbjct: 237 AYRTGRGSVKLRAVATIEEARSGY-QIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDM 295

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           ++ S     R VIELKR A+ +V+LN LYR T LQ+ F + M+AL    P    L+G+ +
Sbjct: 296 KNFSAGSETRFVIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQ 355

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  + EV+ RR+++ L KAR+R H++ GL   +  LD V+  IR              
Sbjct: 356 IYVDHQREVIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIR-------------- 401

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                            ++           SE+Q   IL++ L RLT LGR+++  E  +
Sbjct: 402 -----------ASEDRAAARAALMAEPFGFSELQANHILDMTLGRLTRLGREELEEEAAT 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+   RL  ++K E+L+   E    RRTR      D   ED I  E +V
Sbjct: 451 LRATIAELEAILADAQRLSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIV 510

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  GY+K VP S ++AQ RGG+G  G  ++DED +  +   S  + +L FSS G VY
Sbjct: 511 VLISRSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + + + LP     ARG AL+N++ L   ERIT++M   +      +  +VF T++G V+R
Sbjct: 571 QLRGYELPKLERSARGTALVNLVPLADDERITSVMGTKD---FPEDADLVFFTRNGMVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++++ +  R G IA+ +   DE++SV   T+E+D ++ TK GQ +RFP++ +R   GR
Sbjct: 628 TAMAEYARSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVR-RTGR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVR I  A GD +++  ++                                      
Sbjct: 687 ATAGVRSIRRADGDWIVAGGLI-------------------------------------- 708

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L V+ +G+GKRT    F + +R G GIR   +++    G
Sbjct: 709 ---------------EDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTER--KG 751

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA   V   D++++VS +G +IRV + +I    R   GV + S   +E V SV  + E
Sbjct: 752 ELVAAAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPE 811

Query: 900 SEIV 903
           S   
Sbjct: 812 SGTD 815


>gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168]
          Length = 853

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/900 (36%), Positives = 521/900 (57%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 40  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 450 ----------------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 554 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P+ ++   ++N +++  +  GN+++  LS F  I 
Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNIT 670

Query: 670 RSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKI +KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 671 KNGKIGLKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLR-DSGRTAIGVKGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 730 KLEEGHKIIGACFAFD-------------------------------------------- 745

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 746 ---------NNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N + I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 794 KNNQEAIITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
 gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
          Length = 838

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/860 (38%), Positives = 520/860 (60%), Gaps = 39/860 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E      +        V++++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MSESF----DHTPHNYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV  +K Y K ARI G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSV
Sbjct: 57  NEMGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDTVDF+ NY    +EPV L +R+PNVLVNG  
Sbjct: 117 DGDGAAAMRYTEARMSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE +D    ++ NPD+ ++ LME + GPDFPTG +++G++GI+ A
Sbjct: 177 GIAVGMATNIPPHNLGETIDALSLLMKNPDVSVNELMEALPGPDFPTGGIVMGKSGIRKA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I++R    IE+ + D+E+IVVTEIPY VNKA ++E+IAEL REK+I  I  + 
Sbjct: 237 YQTGKGKIIVRSRVEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVA 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R+G R+V+E++R  SA+V+LN LY+YT+LQ  F  NM+A++   P+  +L  IL  
Sbjct: 297 DESGREGMRIVVEVRRDTSANVVLNNLYKYTALQVTFGFNMLAIDKGVPKIMSLKEILTK 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ ++ EV+ RRT++   KA DRAH+L GL  A+  +DE++ IIR S + E A+ +L++R
Sbjct: 357 YLEYQIEVIRRRTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIER 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S +Q +AIL++RLARLTGL R+ I  E N L
Sbjct: 417 --------------------------FEFSPIQAQAILDMRLARLTGLEREKIEAEYNDL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I+   +ILSS + ++ II+ EL  +K+     RRT + V  L  +EDED I  ED++
Sbjct: 451 MELIRRLTEILSSEANIMAIIEDELADIKNRFPGERRTELRVGELTSIEDEDLIEEEDVL 510

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + ++  GY+KR+    ++ Q RGG+G  G+ M D D +  L   STH S+LFF++ G VY
Sbjct: 511 IALTSNGYIKRMTQDEFQVQNRGGRGVKGMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P     A+G  ++N+L++ + E +  I+       S  + Y+ F TK+G V+R
Sbjct: 571 QSKGYDIPEYGRTAKGIPVVNLLNIEKEEYVKEIIVLH---PSDEDQYLFFVTKNGIVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           + +S +  I  +G IA+ +   DE+++V     + +I++ +  G  + F  +  R+   R
Sbjct: 628 SDVSAYANIRNNGLIALNMREDDELINVLVTNGQQNIIIGSHNGYAMTFAETDARIMG-R 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GVRG+ L +GD V+  A++             Y K   A    +     +     N 
Sbjct: 687 TATGVRGMKLREGDYVVGAAVLNPESNVLVVTERGYGKQTPASEYAVKNRGGKGIKTSNI 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S+  G ++     E    ++ ++ ++++G   R +     +++R+  G++   +    ++
Sbjct: 747 SAKSGQLAGIVSTE---GDEDLMVMTDQGVVIRFNIASISVTSRATLGVKMIRLDDGAKV 803

Query: 839 GALVAVFPVNDNDQIILVSD 858
            ++  +    +  Q +  ++
Sbjct: 804 SSITKIMKTGEETQELAETE 823


>gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 852

 Score =  660 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/853 (39%), Positives = 513/853 (60%), Gaps = 37/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE      ++ ++   +VS+ DEM+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MTEIF----DDIDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSV
Sbjct: 57  NEIGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +  +L D+ KDT+DF+ NY    +EPVVL AR+PN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D    ++ NPD+ +D LME++ GPDFPTGA+++G++GI+ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVMGKSGIRRA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R    IE+ + DRE+IVVTEIPY VNKA ++++IA+L R+KRI  I    
Sbjct: 237 YQTGRGKILVRSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYAN 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R+G R+VIE++R  SA V+LN LY+YT +Q  F  NM+A++   P+   L  IL  
Sbjct: 297 DESGREGMRIVIEVRRDTSASVVLNNLYKYTPMQVSFGFNMLAIDKGVPKILNLKEILSK 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + EV+ RRT+Y   KA +RAH+L GL IA+ ++DE++ IIR S + + A++ELM R
Sbjct: 357 YLDHQVEVIRRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNR 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+VQ +AIL++RL RLTGL RD I  E   L
Sbjct: 417 --------------------------YELSDVQAQAILDMRLVRLTGLERDKIEKEYADL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
              I+   +IL S+ R+  II+ EL  ++      RRT + +  + D+EDE  I  ED++
Sbjct: 451 LDLIQRLTEILGSQERIFQIIEDELNEIRTRFGDARRTELHIGEITDIEDESLIEEEDVL 510

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + +++ GY+KR+    +  Q RGG+G  G+ + D D +  L   STH ++LFF++ G VY
Sbjct: 511 IALTNKGYIKRMTQDEFSVQNRGGRGVKGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +++ + +P     A+G  +IN++ +++GE +  ++    D+ + +  Y+ F TK G V+R
Sbjct: 571 EKRGFEIPEYGRTAKGLPIINLIKIDKGEEVKAMISIS-DQDTDHEKYLFFVTKTGTVKR 629

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              S++  I  +G IA+ L   D +++V        I++ T  G  + F  S +R    R
Sbjct: 630 TLSSEYYNIRNNGLIALNLKEDDSLVAVMETDGNKPIIIGTHEGNAISFLESDVRAMG-R 688

Query: 720 NSVGVRGISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GVRG+ L   D V+   I V  +D        Y K    ++  I           N 
Sbjct: 689 TATGVRGVRLRDDDYVVGADIMVEGSDVLVITDKGYGKRTPVEQYSIKNRGGLGVKTSNI 748

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           S   G ++     E     + IL ++ +G   R        S+R+  G+R   + +   +
Sbjct: 749 SEKSGKLAGLLVVE---GHEDILVMTNQGVAIRMKVEGISQSSRATLGVRMIRLDQEAVV 805

Query: 839 GALVAVFPVNDND 851
            ++  +    ++D
Sbjct: 806 SSITTILESEEDD 818



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G I++   + L  +E  ++ ++ KG+ KR +  +F + NR G+G++   +   + I  LV
Sbjct: 493 GEITDIEDESLIEEEDVLIALTNKGYIKRMTQDEFSVQNRGGRGVKGMGLGDGDHIQTLV 552

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           +    + +D ++  +++G +      EI    R  KG   + +    K E V ++  I +
Sbjct: 553 S---CSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGLPIINLIKIDKGEEVKAMISISD 609

Query: 900 SEIVDE 905
            +   E
Sbjct: 610 QDTDHE 615



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 15/250 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E  +  V+  G VKR   S Y   R    G   + ++++D +  +     +  ++  + 
Sbjct: 614 HEKYLFFVTKTGTVKRTLSSEYYNIR--NNGLIALNLKEDDSLVAVMETDGNKPIIIGTH 671

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G         +      A G   +  + L   + +       E         V+  T  
Sbjct: 672 EGNAISFLESDVRAMGRTATG---VRGVRLRDDDYVVGADIMVEGSD------VLVITDK 722

Query: 655 GNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  +  +   NR G   K +   +   ++  +       DIL+ T  G  +R  + 
Sbjct: 723 GYGKRTPVEQYSIKNRGGLGVKTSNISEKSGKLAGLLVVEGHEDILVMTNQGVAIRMKV- 781

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                + R ++GVR I L +   V S+  +L ++ D  E +    + +        D+E 
Sbjct: 782 EGISQSSRATLGVRMIRLDQEAVVSSITTILESEEDDPELVDDPANSNQLEPEAEIDSES 841

Query: 772 ITSLKNDSSV 781
                + +  
Sbjct: 842 NEVSPDSNEE 851


>gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae]
          Length = 867

 Score =  660 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/895 (35%), Positives = 524/895 (58%), Gaps = 88/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + E+  I    I +EM+NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  N 
Sbjct: 59  DSEKNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNS 118

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 119 AYKKSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 178

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++ + K+TVDF PNYDGS QEP VL  R+PN+LV+G  GIAVGMAT 
Sbjct: 179 YTEARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATK 238

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  N DI ++ L + + GPDFPTGA I G +GI+ AY TGRGS +
Sbjct: 239 IPPHNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIFGVSGIQQAYKTGRGSFI 298

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  +  + +I+  EIPY+V K A++EK+ +LV+EKR+  I D+RDE++RQG R
Sbjct: 299 LRAKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIR 358

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G + ++ILNQLY+ T  Q  +S+NM+A+   +P+   L  IL  ++  ++E+ 
Sbjct: 359 VVFEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVKGEPKLLNLKEILYQYLLHQKEIN 418

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L K +++ +VL+G+ +AV N+DEVV+II+ S +   A+ +L +R         
Sbjct: 419 LRGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKR--------- 469

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+ +QT+AI+++RL RLT L  + +  E+  +  EI    +
Sbjct: 470 -----------------FDLNPIQTKAIVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEE 512

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I++S  +L+ ++  + L + +    PRR+ I   + ++ DED I R D++++++   YVK
Sbjct: 513 IIASDEKLVQLVIDQHLEIINNFADPRRSEINGEIGNIIDEDLIPRSDVIISLTDNNYVK 572

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR Q RGG G S   +  +D++  ++  +THT +L  +S   ++K +  ++P  
Sbjct: 573 RINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDS 632

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           + Q +G   +N+L + + E+I T++ + +D   + + ++V  ++ G +++  L  +  IN
Sbjct: 633 TKQGKGIPFVNLLPIEKDEQIYTLLVWNQD---YAHHFLVTVSRLGLIKKTPLEFYKNIN 689

Query: 670 RSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GK A+KL+  D ++S     +     +L+ +  G+  +F   +IR   GR ++GV+GI
Sbjct: 690 KNGKYALKLNENDTLVSAFIVKENEPCEVLIGSSSGKVNKFDFDSIRS-TGRVAMGVKGI 748

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   + VI  +                                                
Sbjct: 749 KLTNDEFVIGAS------------------------------------------------ 760

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  L  +++  +   G+GK+TS  ++R ++R+ KG++  +     + G+L  +  +
Sbjct: 761 -----HSLSGEYVFALGRFGYGKKTSIDEYRQTSRNSKGVKTLNT---EKAGSLCFISII 812

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             N++ ++V+ KG LIR  + +I I SR TKGV I +   ++ + SV  + + E 
Sbjct: 813 KGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDNDEIQSVTIVDKFEE 867


>gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
          Length = 803

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/854 (39%), Positives = 508/854 (59%), Gaps = 88/854 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  LI+GQGNFGS
Sbjct: 1   MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R  K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG 
Sbjct: 61  VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT IP HNL E++D  + ++DNP+   D LME I+GPDFPTG  I GR GI +
Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIID 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + IR   HIE T G +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++
Sbjct: 181 AYNTGRGRVRIRAKHHIE-TRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEV 239

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELK+ A +++++N LY+ T +++ F + ++A+   +P+ FTL  +L 
Sbjct: 240 RDESDRDGIRVVIELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLN 299

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F++ R+ V++RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  
Sbjct: 300 VFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLEL 359

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS +Q++AIL++RL RLTGL RD +  E   
Sbjct: 360 R--------------------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQE 393

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL S  +L+ IIK+EL  ++++  + R T I +   +++ ED I  E MV
Sbjct: 394 LMAIIAELESILKSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMV 453

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++H GYVKRVP+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y
Sbjct: 454 VTITHNGYVKRVPIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLY 513

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+R+P GS  A+GKA++N+++L   E+I  I+P  + + S +   + F T++G V+R
Sbjct: 514 WLKVYRIPEGSRTAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS---LAFFTRNGVVKR 570

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
             LS+F  I  +G  A+ LD  DEI++ +  T     +++ T LGQC+RF +   R   G
Sbjct: 571 TSLSEFSNIRSNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QG 629

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R++ GVRGI      D V+   +V + + +                              
Sbjct: 630 RSTRGVRGIKFKHDTDFVVDANVVDNIEQE------------------------------ 659

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +LTVS+KG GKRT+  ++R +NR+G G+ +  +S   +
Sbjct: 660 ----------------------LLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--K 695

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V++   +++++  G +IRV +  IR A R T GV+I +    ++VVS+ + 
Sbjct: 696 TGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKC 755

Query: 898 RESEIVD-EAESTE 910
            + +  + + E+ +
Sbjct: 756 PKEDDDELDIENAD 769


>gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 835

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/908 (37%), Positives = 535/908 (58%), Gaps = 90/908 (9%)

Query: 1   MTEHIISSDE------EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++    +DE       +   I  V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV R
Sbjct: 1   MSDQKTQNDEANNHKDHDHGNIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++GV  +  Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++G 
Sbjct: 61  RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K A  L+ ++ KDT+DF  NYDG+ +EP+VL    PN+
Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IPTHNLGEV+DG +  I+N DI +D LM+ I+GPDFPTG  +LG 
Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +K+AY TG+G+++++  SH+      +  I+VTEIPYQV K  ++EKIA LV+ K + 
Sbjct: 241 QSLKSAYHTGQGAVILKAKSHV-SKERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           +I DLRDES R+G ++VIELKR A++ +ILN+LY+++ L+  F +NMVAL G  P+  +L
Sbjct: 300 EITDLRDESSRKGMKIVIELKRDANSKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+AF  FR EV+ R+  + L KA  R H++  L   + +++  +++I+ S + + A+
Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQ 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +LMQR                              E+Q++AILE+ L RL       + 
Sbjct: 420 SKLMQR--------------------------YNFDEIQSKAILEMSLQRLANQETQKLI 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCI 533
            E  +L  EI EC  I+ S+ +   I+++ELL +K +    R+T +  +  L+ EDED I
Sbjct: 454 TEEKNLTQEILECQSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +++T+++ GY+K + +  Y+ Q+RGG+G SG+ + +EDF+  L I STH   LFF+
Sbjct: 514 EEKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + +P+G  Q++G  L+N L   + E +T+       + S +  Y+ FATK
Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSVKNFDQSQD--YLFFATK 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L ++  I++ G IA++L   DE+L+V   T   +I+L +  G  + F  + I
Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVNKTTGTKNIILASNNGNAICFCETKI 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  + RNS+GV G+ L   + ++  A+                                 
Sbjct: 692 KSIS-RNSMGVIGMRLGSDEFLVGAALF-------------------------------- 718

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                             +   KEQ IL ++E GFGK T+   +RI  RSGKG +   V+
Sbjct: 719 ------------------DTDSKEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVN 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVV 892
             ++ G L+ +  V   D +I+ SDKG ++RV +++I     +AT+G  I       + V
Sbjct: 761 --DQKGRLITLQVVLPTDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818

Query: 893 SVERIRES 900
           SV  +++ 
Sbjct: 819 SVAVVKKE 826


>gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 850

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/856 (38%), Positives = 480/856 (56%), Gaps = 47/856 (5%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   +      + + +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDERTTDARHISDTERVRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPASSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    +D+         +AL+++I GPDFPTGA ILG 
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATILGH 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V  +E+    R+ +VVTE+PYQVN   + +KIA+LVR+ +I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVSVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQIQ 299

Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE+  R G R+VI LKR A A V+LN LY+ T LQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTPLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRT++ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWITHQIDVIVRRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L             IDL+D  +             VQ  AIL L+L RL  L R  I
Sbjct: 420 RAGL-------------IDLLDVDA-------------VQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL    R   II +EL  + D+    RRT I+    +M  ED I
Sbjct: 454 LDEHAQLKARVDDLRDILDKPERQRTIISEELSEIVDKFGDERRTTILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +R  D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGGDVVEHFFVTTTHHWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    ERI  ++     E +    ++V ATK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDERIAQVLAIRTYEDAD---HLVLATK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V+++ L+ +      G IA+ L        DE++S +T   + D++L ++ GQ VRF
Sbjct: 631 SGLVKKSPLALYNSPRSGGIIAINLREDEAGNPDELVSAQTIMADQDLILVSRDGQAVRF 690

Query: 709 PISAIRVF-AGRNSVGVRGISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLIS 766
             +  ++   GR++ GVRG+     D+++SM + V   D        Y K          
Sbjct: 691 AATDEQLRPMGRSTSGVRGMKFRGDDELLSMEVPVEGTDLLIVTESGYAKRTPVAEYPTK 750

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                   +   S   G +       +   ++ ++ ++E G   + ++ D R ++R+  G
Sbjct: 751 SRGTMGVRVGKLSDERGGL---VGALVVKPDEDVMVITESGKLVQVNASDVRPTSRNTMG 807

Query: 827 IRATDVSKINEIGALV 842
           +        + I A+ 
Sbjct: 808 VIFARPDADDRIIAIT 823


>gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
 gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 884

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/844 (40%), Positives = 519/844 (61%), Gaps = 41/844 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  + V  N+
Sbjct: 2   QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K++K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 62  KHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L+K +  +L DL KDTVDF+ N+D S  EP V+  + P +LVNG  GIAVGMATN
Sbjct: 122 YTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E +D  VA IDN +I +D LM+ I  PDFPTG +I G  G+++A+ TGRG IV
Sbjct: 182 MAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   + E+  G+R  I+VTEIPYQVNKA M+ + AELV++++I  I ++RDESDRQG R
Sbjct: 242 LRAKINFEEV-GNRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V ELK  A  +V+LN LY+YTSLQ+ FSVN +AL   +PE+  L  I+  FV  R EVV
Sbjct: 301 IVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHEVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +RRT++ L KA++RAH+L G         +LD+ + IIR S NP  A+  LM+       
Sbjct: 361 IRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE------ 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AIL+LRLARLTG+  D IR E + +   I++
Sbjct: 415 --------------------FDLSDLQAQAILDLRLARLTGMELDKIRAEYDEIMNLIRD 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++ SR   IIK EL+ +K++    RR+ I     +M  ED I  E +V+T+SH G
Sbjct: 455 FEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  +  +V+ +
Sbjct: 515 YIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEI 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           P GS  ++G+A+ N++++   ++I   +   +  D    N + VV  TK+G +++  L  
Sbjct: 575 PEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEA 634

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+++   D++L     + +++I++ TK G+C+RFP    R    R S+GV
Sbjct: 635 YSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKARAVG-RGSIGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGISL   D+VI M +V     D +     +       +  + +   +T+      +  N
Sbjct: 694 RGISLEDDDEVIGMIVV----NDVENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLN 749

Query: 785 ISEERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           I+E+    + ++    E  ++ +++ G   R S  + R+  R+ +G++  ++   + I A
Sbjct: 750 ITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAA 809

Query: 841 LVAV 844
           +  V
Sbjct: 810 IAKV 813


>gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/887 (38%), Positives = 528/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMA  +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+D+ K+TV+   N+DG+ +E  VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TRLAEEMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E     + +IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKRVK-RIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTK 374
           + A+ +VI+N LY+ T+LQ  F+V M+ ++ + +P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+AR+ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT + +  ++  +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +    +S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GK 673
           G+ +   L+L   E+I  +              +V ATK G ++R  L +F     + G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLN-----GEGRDLVIATKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E   +++ TK+G  +RFP+S +R    RN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMG-RNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   +                                               
Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R  ++S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+      ++  +E    E   +E+ ++  +  G     P+++ R    R   G+   
Sbjct: 478 PRRTEVTDQSIEYNEE----ELIVEEDVVITLSHKGYLKSTPLNSYRS-QKRGGKGITVS 532

Query: 728 SLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L++ D+V  + +  +  +  +   +     +   +   +G       +    ++E    
Sbjct: 533 KLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEK 592

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
                 L  + + ++  ++ G  KRT+  +F    SNR    +RA  +   +E   +V+ 
Sbjct: 593 IVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRG---VRAIKIEPGDE---IVSA 646

Query: 845 FPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             VN   + ++V +  G  IR PV+++R   R   GV        + VVSV+ I   E  
Sbjct: 647 RVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGEEG 706

Query: 904 DEAESTE 910
           +    TE
Sbjct: 707 EILTVTE 713


>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/876 (39%), Positives = 491/876 (56%), Gaps = 87/876 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +  ++  I  + +  E + SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ 
Sbjct: 21  EDNRPQDVRIVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLS 80

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K + KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR  L+ G GNFGS+DGDP A
Sbjct: 81  SKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAA 140

Query: 127 AERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           A RYTECRLQ  +   LL DL  DTVDF P +DGS  EP VL AR PNVL+NG  GIAVG
Sbjct: 141 AMRYTECRLQGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVG 200

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD  +A++ NP+  ++ LME + GPDFPTG  ILG  GI +AY  G 
Sbjct: 201 MATNIPPHNLAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQILGTDGILDAYRFGH 260

Query: 246 GSIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G + +RG + IE+     +R  ++++E+PYQ NKAA++EKIA+LV  K +  ++D+RDES
Sbjct: 261 GRLTVRGKASIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDES 320

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+VIE+KRGA   V+LN LY+YT+LQ+ FS NMV + G +P+   L   L+ FV 
Sbjct: 321 DRFGMRIVIEVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGIIGGEPKVMGLKDFLETFVE 380

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR  V+ RR K+ L +A DR H++ G+ I ++NLD VV+IIR + +   A   L +    
Sbjct: 381 FRCSVIERRAKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQK---- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    ++  Q  A+L + L RLT L    ++ E ++L  E
Sbjct: 437 ----------------------GFNVTPAQADALLAMPLRRLTSLESGKLKEEHDALTAE 474

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTV 542
           I +   +L S+ R+L II++E L +K E  TPRRT + +G   ++ D D I  E+ +VT+
Sbjct: 475 ITDLKQLLESKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGEINDIDVIANEETIVTL 534

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KR+    + AQ RG  G+SG  MR  D ++D F+  TH  VLFFS  G VY  +
Sbjct: 535 SEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIR 594

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +++P  S  + G  L+ ++ +  GERIT++    +      + Y+V  T  G ++R  L
Sbjct: 595 AYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFAE---DQYLVMLTTGGYIKRTAL 651

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S F  I  +G +A++L   DE+  V    +E+ + L ++ G  V       +V   R + 
Sbjct: 652 SSFASIRSTGIVAIQLTPGDELKWVRNAAEEDTVALASQRGMVVCIGCDDDKVLG-RATR 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR + L   D++ +M IV                                         
Sbjct: 711 GVRAMRLRGDDKLTAMDIVPA--------------------------------------- 731

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              S  R    K    ++L V+E GFGKR     F        G+    V    E     
Sbjct: 732 ---SLVRTGTKKTGAPWLLMVTEDGFGKRVPIKAFPKGVAGRVGVIGCKVKTDGES---- 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
                   +Q+++ S+KG L R+ V ++ I SR  K
Sbjct: 785 -------EEQVVVGSNKGILNRLRVRDVSIQSRTAK 813



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 9/223 (4%)

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             EI  ++    E  I+  ++ G   R           R + G  G  +   D +    +
Sbjct: 516 DGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTA-QNRGTTGKSGGKMRSNDAMSDFFV 574

Query: 741 VLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
               D      +  I Y                              I+  +      ++
Sbjct: 575 CRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFAED 634

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           Q+++ ++  G+ KRT+   F     +G  I A  ++  +E   L  V    + D + L S
Sbjct: 635 QYLVMLTTGGYIKRTALSSFASIRSTG--IVAIQLTPGDE---LKWVRNAAEEDTVALAS 689

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +G ++ +  ++ ++  RAT+GV       D+++ +++ +  S
Sbjct: 690 QRGMVVCIGCDDDKVLGRATRGVRAMRLRGDDKLTAMDIVPAS 732



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 13/184 (7%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS----- 780
            + L +   + S  +    DA   E     + + ++ R++    +E   LK +       
Sbjct: 450 AMPLRRLTSLESGKLKEEHDALTAEITDLKQLLESKHRVLQIIEKEALVLKKEYGTPRRT 509

Query: 781 --VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              +G   E    ++   E+ I+T+SEKG+ KR ++  F   NR   G     +   +  
Sbjct: 510 LVEQGRDGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSND-- 567

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
            A+   F    +D ++  S++G +  +   +I   SR + G   V +      ER+ SV+
Sbjct: 568 -AMSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQ 626

Query: 896 RIRE 899
            + +
Sbjct: 627 SVSD 630


>gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae]
 gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae]
          Length = 919

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/907 (38%), Positives = 539/907 (59%), Gaps = 92/907 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  EIEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+G GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  IADLRDES+R G R
Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA DR H+L GL IAV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSAR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+   +
Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDGMIEEMQNLAAEIERITN 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL++R  L+ +I  EL  +K++    RRT I + +   + DED I + D+V+T S  GYV
Sbjct: 523 ILANRDLLIDLIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D ++ +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINILS---LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            + Q++G + INI+    +++GE++ +++   E     ++ Y+  ATK G +++  LS+F
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEY---SDDKYLFTATKLGIIKKTSLSEF 699

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN +GK A  L   DE++       +  ILL     + V+F  +  R  + R + GV+
Sbjct: 700 QIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVK 758

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA+ +  IS +     +                                        
Sbjct: 759 GITLAEDETCISASSSSEGE---------------------------------------- 778

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT+ + GFGK T    FR+ +R GKG+   +    ++ G LV   
Sbjct: 779 -------------LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFAR 822

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE--RIRESEIV 903
            VN +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE  ++     +
Sbjct: 823 FVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESDSTL 882

Query: 904 DEAESTE 910
           DE    E
Sbjct: 883 DETIEDE 889



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 15/261 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ M   D    +  + T + LG +K+  LS +  Q     G+    +++ED +    
Sbjct: 665 EKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEF--QIININGKRAFNLKEEDELIRAS 722

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I+     +L  +S   + K         S  A G   +  ++L + E   +        S
Sbjct: 723 IIDDDELILLANSKQRIVKFHSNEFRALSRIATG---VKGITLAEDETCISA------SS 773

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLT 699
           S     ++   K+G  +    S F  ++R GK  I +  D    ++        ++IL+ 
Sbjct: 774 SSEGELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMI 833

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHM 758
           T  G  +R PI  I    GR + GV+ I+L K +Q+ ++ IV L +D+  DE I   K +
Sbjct: 834 TTSGLTIRIPIKDINE-TGRATKGVKLINLKKKEQIQAVEIVKLESDSTLDETIEDEKFI 892

Query: 759 SAQRRLISGDTEEITSLKNDS 779
              +        +   +  ++
Sbjct: 893 DDIKNQTKEILLDKGDINEET 913


>gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
 gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
          Length = 865

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/893 (36%), Positives = 520/893 (58%), Gaps = 90/893 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  +G+T V+I DE++ S+L YA++V++ RAIPD RDGLKPVHRRIL+ M ++G+    
Sbjct: 58  DEPTEGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGT 117

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD PA+ R
Sbjct: 118 QYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMR 177

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL+ + K+TVDF  NYD + +EP VL +R+PN+LV+G  GIAVGMAT+
Sbjct: 178 YTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATS 237

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A   N DI ++ L++ I+GPDFPTG VILG  GI  AY TGRG I 
Sbjct: 238 IPPHNLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVILGTKGILEAYKTGRGQIP 297

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +   ++ +I++T+IPY + K+A++E I++L +E  +  I+DLRDES+R G R
Sbjct: 298 LRSEYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIR 357

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+G + +V+LN+L++ +SL + FSVNMVAL   +P+  TL  +L  ++  ++EV+
Sbjct: 358 IVIDIKKGFNPEVVLNKLFKKSSLLTKFSVNMVALVNTQPKLLTLKDVLDVYLEHQKEVL 417

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R   + L KA+D  H+L GL +A  N+D+VV +I+ S + E A ++L+++         
Sbjct: 418 TRELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEK--------- 468

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL +RL RLTGL    + NE+  L  EI+    
Sbjct: 469 -----------------YSLSEEQAKAILNMRLGRLTGLSYSKMTNEIEELRKEIQRITS 511

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL S   L+  +  +L  +K++    R+T         + +E  I R+D+V+T +  G+V
Sbjct: 512 ILDSEQELVNNVIADLEKIKEKYGDSRKTSIDASASSSINEEQLIPRKDIVITATVDGFV 571

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV L  Y  Q RGG G +G+     D +  +   +TH  +  FS+LG VYK + +++  
Sbjct: 572 KRVNLEEYNLQNRGGMGSTGMKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQE 631

Query: 609 GSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +++G +  N++ LN+   E+I  I+P    ES   NL+++  TK G V++  L +F 
Sbjct: 632 ADKKSKGNSFANLVELNKELNEKIIRILPVDSYES---NLHLLTVTKKGIVKKTALDNFK 688

Query: 667 QINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           ++  +G  A KL D  DE+  V   T  + +L+       V+F  S IR    RNS+GV+
Sbjct: 689 KVRSNGIKAFKLKDEEDELKDVILVTNSDLVLVANNHKNVVKFEASKIRS-QARNSIGVQ 747

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L    +V S++     +                                        
Sbjct: 748 GMKLDGKYEVQSISSSKEGE---------------------------------------- 767

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        F+LT+ E GFGK T   ++ ++NR+ KG  + + +   + G LV   
Sbjct: 768 -------------FVLTIGEFGFGKLTDHKEYSLTNRNAKGKTSINPA---KAGNLVFAK 811

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            VN  D++++++ +G  IR  ++++ + SR +KGV I    + ++++SVE I+
Sbjct: 812 FVNPTDELLIITAQGNTIRTQLDQVSVFSRNSKGVRIIKLNEGDKIISVEVIK 864



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 15/207 (7%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFV 598
           +TV+  G VK+  L  ++  R    G     ++DE D + D+ +V+    VL  ++   V
Sbjct: 671 LTVTKKGIVKKTALDNFKKVRS--NGIKAFKLKDEEDELKDVILVTNSDLVLVANNHKNV 728

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            K +  ++   +  + G   +  + L+    + +I       SS    +V+   + G  +
Sbjct: 729 VKFEASKIRSQARNSIG---VQGMKLDGKYEVQSI------SSSKEGEFVLTIGEFGFGK 779

Query: 659 RNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                ++   NR+  GK ++       ++  +     +++L+ T  G  +R  +  + VF
Sbjct: 780 LTDHKEYSLTNRNAKGKTSINPAKAGNLVFAKFVNPTDELLIITAQGNTIRTQLDQVSVF 839

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLH 743
           + RNS GVR I L +GD++IS+ ++ +
Sbjct: 840 S-RNSKGVRIIKLNEGDKIISVEVIKN 865



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 10/221 (4%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADA 746
           +   +++ ++  T  G   R  +    +   R  +G  G+    GD ++S+     H D 
Sbjct: 554 QLIPRKDIVITATVDGFVKRVNLEEYNL-QNRGGMGSTGMKTWSGDAILSIIQTNTHVDL 612

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----KLKEQFILT 802
                +  +  + A +   +    +  S  N   +   ++E+  + L          +LT
Sbjct: 613 FLFSNLGKVYKLRAYKIQEADKKSKGNSFANLVELNKELNEKIIRILPVDSYESNLHLLT 672

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V++KG  K+T+  +F+    +G  I+A  +   +E   L  V  V ++D +++ ++   +
Sbjct: 673 VTKKGIVKKTALDNFKKVRSNG--IKAFKLK--DEEDELKDVILVTNSDLVLVANNHKNV 728

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++   ++IR  +R + GV          V S+   +E E V
Sbjct: 729 VKFEASKIRSQARNSIGVQGMKLDGKYEVQSISSSKEGEFV 769



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 105/272 (38%), Gaps = 10/272 (3%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRDEILSVETCTQEN 694
            E++       V+ AT  G V+R  L ++   NR G     MK  S D ILS+       
Sbjct: 551 NEEQLIPRKDIVITATVDGFVKRVNLEEYNLQNRGGMGSTGMKTWSGDAILSIIQTNTHV 610

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           D+ L + LG+  +     I+  A + S G    +L + ++ ++  I+     D  E   +
Sbjct: 611 DLFLFSNLGKVYKLRAYKIQE-ADKKSKGNSFANLVELNKELNEKIIRILPVDSYESNLH 669

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ----ELKLKEQFILTVSEKGFGK 810
           +  ++ +  +     +    ++++      + +E  +     L      +L  +      
Sbjct: 670 LLTVTKKGIVKKTALDNFKKVRSNGIKAFKLKDEEDELKDVILVTNSDLVLVANNHKNVV 729

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +  +   R   R+  G++   +    E+ ++ +     + + ++ + + G        E 
Sbjct: 730 KFEASKIRSQARNSIGVQGMKLDGKYEVQSISSSK---EGEFVLTIGEFGFGKLTDHKEY 786

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            + +R  KG    + AK   +V  + +  ++ 
Sbjct: 787 SLTNRNAKGKTSINPAKAGNLVFAKFVNPTDE 818


>gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
 gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
          Length = 919

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/907 (38%), Positives = 539/907 (59%), Gaps = 92/907 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+  GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  IADLRDES+R G R
Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA+DR H+L GL IAV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+   +
Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDSMIEEMQNLAAEIERITN 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           IL++R  L+ +I  EL  +K++    RRT I + +   + DED I + D+V+T S  GYV
Sbjct: 523 ILANRDLLIELIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D ++ +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINILS---LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            + Q++G + INI+    +++GE++ +++   E     ++ Y+  ATK G +++  LS+F
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEY---SDDKYLFTATKLGIIKKTSLSEF 699

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN +GK A  L   DE++       +  ILL     + V+F  +  R  + R + GV+
Sbjct: 700 QIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVK 758

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA+ +  IS +     +                                        
Sbjct: 759 GITLAEDETCISASSSSEGE---------------------------------------- 778

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT+ + GFGK T    FR+ +R GKG+   +    ++ G LV   
Sbjct: 779 -------------LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFAR 822

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE--RIRESEIV 903
            VN +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE  ++     +
Sbjct: 823 FVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESDSTL 882

Query: 904 DEAESTE 910
           DE    E
Sbjct: 883 DETIEDE 889



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 15/261 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ M   D    +  + T + LG +K+  LS +  Q     G+    +++ED +    
Sbjct: 665 EKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEF--QIININGKRAFNLKEEDELIRAS 722

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I+     +L  +S   + K         S  A G   +  ++L + E   +        S
Sbjct: 723 IIDDDELILLANSKQRIVKFHSNEFRALSRIATG---VKGITLAEDETCISA------SS 773

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLT 699
           S     ++   K+G  +    S F  ++R GK  I +  D    ++        ++IL+ 
Sbjct: 774 SSEGELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMI 833

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHM 758
           T  G  +R PI  I    GR + GV+ I+L K +Q+ ++ IV L +D+  DE I   K +
Sbjct: 834 TTSGLTIRIPIKDINE-TGRATKGVKLINLKKKEQIQAVEIVKLESDSTLDETIEDEKFI 892

Query: 759 SAQRRLISGDTEEITSLKNDS 779
              +        +   +  ++
Sbjct: 893 DDIKNQTKEILLDKGDINEET 913


>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
 gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
          Length = 812

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/836 (40%), Positives = 505/836 (60%), Gaps = 37/836 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I S  +  +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +K +
Sbjct: 4   QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+Y++  RMAQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 64  RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG  GIAVGMATNIP
Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +HNLGEVVDG  A+IDNP+I +D LM  ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R
Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ S  + +IVVTEIPYQVNKA ++E IAEL ++K I  I  LRDESDR G R+V
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN L+++T L+  F   M++L    P   +L  ++  ++  +EEV+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S     A+  LM +           
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL RLTGL R+ I ++   +   I    D+L
Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S R++++ ++K EL+ +K++    RRT+  +     +  D +  E M +TV+   Y+KR+
Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R QR+GG+G SG+ M+D+D+V  +   STH  +LFF+  G VY + V   P+ S 
Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577

Query: 612 QARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            ARG ALIN +  L + ER+T ++    D S+    Y++  T++G V++  + ++  IN+
Sbjct: 578 TARGSALINFIPTLEKDERVTEML--DPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA++L+  D ++ V     + D++L T+ G  +RF I+   + + GR + GV GI L
Sbjct: 636 NGIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + GD+V+   I    D          K        + G   +               E  
Sbjct: 696 SAGDEVVGAVIADEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFK------RGFEVV 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAV 844
                     ++ VSE G   +TS+        ++G+G+    + + + I ++  V
Sbjct: 750 ALVAADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVV 805



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 20/231 (8%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T        ++ +        ++ ++  GYVK+  +  Y+       G   + + +
Sbjct: 594 DERVTE------MLDPDMSNEGVKYLLMITRYGYVKKTLIEEYK--HINKNGIIALRLNE 645

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW--RLPIGSPQARGKALINILSLNQGERIT 631
            D +  +  V     V+  +  G   +  +    +      A G   I +      E + 
Sbjct: 646 GDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKLS--AGDEVVG 703

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            ++         +   +   +  GN +RNK S +    R+GK         E++++    
Sbjct: 704 AVIA--------DEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVAAD 755

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
             ++++  ++ G  ++   S I     +   GV    L +GD++ S+ +V 
Sbjct: 756 DNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVVP 806


>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
          Length = 917

 Score =  655 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/871 (39%), Positives = 503/871 (57%), Gaps = 72/871 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 97  DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216

Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I  + +  +A   L           
Sbjct: 457 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSE-------- 508

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AILE+ L RLT L R    +E +SL  +I +  
Sbjct: 509 ------------------YGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 550

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ VS  GY
Sbjct: 551 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 610

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 611 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAE---DRYLLMLTVNGCIKKVSLKLFSG 727

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  + RN+ GV  +
Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 786

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+                                SL+ D   +   SE
Sbjct: 787 RLKNEDKIASMDIIP------------------------------ASLRKDMEEK---SE 813

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+    V              V
Sbjct: 814 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKV-----GSGFSPFLVV 868

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             ++Q++LVS  GT+ R+ V +I I SR  +
Sbjct: 869 FSDEQVVLVSQSGTVNRIKVRDISIQSRRAR 899



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 11/254 (4%)

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L D     R   +    DS D +  ++    E  ++  ++ G   R       +   R
Sbjct: 568 IELKDRFSSPRRS-MLEDSDSGD-LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNL-QHR 624

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLK 776
            ++G     L   D +    +    D      D  I Y                      
Sbjct: 625 GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQI 684

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              S    ++         +++++L ++  G  K+ S   F  S     GI A  ++  +
Sbjct: 685 LSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLF--SGIRSTGIIAIQLNSGD 742

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           E   L  V   + +D + + S  G +     + +R  SR TKGV       ++++ S++ 
Sbjct: 743 E---LKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDI 799

Query: 897 IRESEIVDEAESTE 910
           I  S   D  E +E
Sbjct: 800 IPASLRKDMEEKSE 813


>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 812

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/843 (40%), Positives = 508/843 (60%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I S  +  +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +K +
Sbjct: 4   QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+Y++  RMAQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 64  RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG  GIAVGMATNIP
Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +HNLGEVVDG  A+IDNP+I +D LM  ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R
Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ S  + +IVVTEIPYQVNKA ++E IAEL ++K I  I  LRDESDR G R+V
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN L+++T L+  F   M++L    P   +L  ++  ++  +EEV+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S     A+  LM +           
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL RLTGL R+ I ++   +   I    D+L
Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S R++++ ++K EL+ +K++    RRT+  +     +  D +  E M +TV+   Y+KR+
Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R QR+GG+G SG+ M+D+D+V  +   STH  +LFF+  G VY + V   P+ S 
Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577

Query: 612 QARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            ARG ALIN +  L + ER+T ++    D S+    Y++  T++G V++  + ++  IN+
Sbjct: 578 TARGSALINFIPTLEKDERVTEML--DPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IA++L+  D ++ V     + D++L T+ G  +RF I+   + A GR + GV GI L
Sbjct: 636 NGIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRAVGRVAAGVHGIKL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + GD+V+   I    D          K        + G   +               E  
Sbjct: 696 STGDEVVGAVIADEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFK------RGFEVV 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++ VSE G   +TS+        ++G+G+    + + + I ++  V   N
Sbjct: 750 ALVAADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVVPEEN 809

Query: 849 DND 851
           + +
Sbjct: 810 EEE 812


>gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
 gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
          Length = 819

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/902 (37%), Positives = 527/902 (58%), Gaps = 86/902 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           I  +    +  I  V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++ 
Sbjct: 2   INQNPNLNQGKIKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELS 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  N  Y K ARI G+VMGKYHPHG+++IY+A+ RM+QD+S R  L++G GNFGS+DG  
Sbjct: 62  VYSNSSYKKAARIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHK 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  L+ ++ K+T++F  NYDGS +EP+VL    PN+L+NG  GIAV
Sbjct: 122 AAAMRYTEVKMAKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMAT IPTHNL EVVDG +A I + +I +  LM+ I+GPDFPTG  +LG  G++NAY TG
Sbjct: 182 GMATKIPTHNLAEVVDGLIAYIKDKNISILGLMQYIKGPDFPTGGELLGLKGLENAYKTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GS++I+  +HI      +  IVVTEIPYQ+ K+A++EKIA LV++K I  I DLRDES 
Sbjct: 242 QGSVIIKAKTHI-LEEKGKTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDESS 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           RQG ++VIELK+ A++ VILNQLY+++ L+  F +NMVAL   KP+  +L  IL+AF  F
Sbjct: 301 RQGMKIVIELKKNANSKVILNQLYKHSPLRISFGINMVALVDKKPQLVSLKTILEAFFNF 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +V+ ++  + L KA+ R H++      + ++   +++I+ S + + A+++LM +    
Sbjct: 361 RIQVINKQKFFELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQ---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                      +Q++AILE+ L RL+      +  E   L  EI
Sbjct: 417 ----------------------YQFDAIQSKAILEMSLQRLSNQETQKLFIEEQKLTKEI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVS 543
            EC  I+ S+ +   I+++ELL +K +    RRT +  +  LD +DED I ++++++T++
Sbjct: 455 AECQSIIESQPKKEKILEKELLEIKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITIT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GY+K      YR Q+RGGKG +G+ + +EDF+  L   STH  +LFF++ G VY+ K 
Sbjct: 515 NKGYIKVTDAEFYRQQKRGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKG 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++ +    ++G  L+N+L+L  GE +T+       +    + Y+ FATK G V++  L 
Sbjct: 575 YQINLSDKSSKGIPLVNLLNLKPGETLTSCASVKNFDQ--PDNYLFFATKKGIVKKTSLK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I  +GKIA+ L   DE+L+V       +I+L +  G  + F  S  R    R S G
Sbjct: 633 EYSNIRENGKIAIVLRDDDEVLTVANTNGRQNIILASNNGNAICFDESQTR-KTSRQSQG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ L KG+ +I  A+      D                                    
Sbjct: 692 VIGMDLKKGEFLIGAALFDPNSKD------------------------------------ 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         Q IL ++EKG+GK TS   +RI +R+GKG +   ++  ++ G L+A
Sbjct: 716 --------------QSILVMTEKGYGKITSVNQYRIQSRNGKGSKTIKIN--SKTGRLIA 759

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEI 902
           +     +  +I+ SDKG +IRV +++I+    +AT+G  I       + V V    ES+I
Sbjct: 760 LKTAASSQDLIISSDKGQVIRVSISDIKNTKHKATQGTKIIKLKTGHKAVLVA--VESKI 817

Query: 903 VD 904
            D
Sbjct: 818 ND 819


>gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A
 gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 903

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/904 (37%), Positives = 514/904 (56%), Gaps = 92/904 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E ++   + +        +  +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M
Sbjct: 1   MSEEMVPGSQFKSL------VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  NK  VK ARI G+V+GKYHPHG+ A+YD LARMAQD+SLR  L+ GQGNFGS+
Sbjct: 55  HKLGVVPNKGTVKSARIVGDVIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++      +L+DL K+TVD  PNYD S +EP+VL +  PN++VNG  
Sbjct: 115 DGDSPAAMRYTEAKMNNLGALMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV     A+ +NPD+  + LME ++GPDFPTGA++ GR+GI+ A
Sbjct: 175 GIAVGMATNMAPHNLREVGAAIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG G + +R  + IE  +  + +I+VTEIPY VNKA + +KIA+LVR+KRI  I D+R
Sbjct: 235 YLTGHGRVRVRARTEIETDAKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIR 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R   R+VIEL+R A  +V+LN L++YT LQ+ FS+  +AL    P+  TL  +L+ 
Sbjct: 295 DESSRD-IRIVIELRRDAVGEVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQV 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R +V+ R T++ L KA  R H++ GL IA  N+DEVV+IIR S   E A++ L  R
Sbjct: 354 YIDHRLDVITRATQFDLKKAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RLA+L GL  + +  E N L
Sbjct: 414 --------------------------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNEL 447

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              + +  DIL  R R + I+ Q+L +V D+    RRT I E + D +DED I  E+ V+
Sbjct: 448 IATVADLKDILEKRERRVAIMLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVI 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY++R+P+  ++AQ RGGKG  G  ++DED V  +F  STH+ +L F++ G VY 
Sbjct: 508 TLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYW 567

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP G+   +G+ ++N ++L +GE++  I+P  +    +    +VFATK G + + 
Sbjct: 568 TKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPVRKFGGYF---CLVFATKKGIINKM 624

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC------------------------------ 690
            L+ F +  ++G  A+ LD  DE++ V+                                
Sbjct: 625 DLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQA 684

Query: 691 ---------------------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                  ++ +++ TK GQ V FPIS  R    R + GV+GI+L
Sbjct: 685 AEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTFPISCFRAMG-RGTHGVKGITL 743

Query: 730 AKGDQVISMAIVLHADADYD-ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A+GD+VIS+  +   +         Y K        ++    +     N   V   I   
Sbjct: 744 AEGDEVISLLWLKAGNKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLN---VTDKIGAA 800

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E    +  ++  S+ G   R  + D R++ R+ +G++A  +   + +    A+  V 
Sbjct: 801 VFVESVADDYDLIITSKDGQVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVE 860

Query: 849 DNDQ 852
           D +Q
Sbjct: 861 DIEQ 864



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 84/207 (40%), Gaps = 14/207 (6%)

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              ++  +  G      +           G   +  ++L +G+ + +++           
Sbjct: 708 KDLLMIATKNGQAVTFPISCFRAMGR---GTHGVKGITLAEGDEVISLLWLKAGNK---- 760

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
             ++  T+ G  +R++   +    R  K    L+  D+I   + VE+   + D+++T+K 
Sbjct: 761 --ILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKD 818

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R   + IR+  GRN+ GV+ I+L  GD V+  A  L +  D ++     K    + 
Sbjct: 819 GQVIRIKAADIRL-TGRNAQGVKAITLRDGD-VVKDATALPSVEDIEQDSADAKETFDKV 876

Query: 763 RLISGDTEEITSLKNDSSVEGNISEER 789
           + +  D + +     +    G    E 
Sbjct: 877 KGVEVDDDSVVKDDAEKQEIGPTETEE 903


>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
 gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
          Length = 815

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/844 (39%), Positives = 492/844 (58%), Gaps = 37/844 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I +  +  +M+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y
Sbjct: 4   KEGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD+  RMAQD+S+R  L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K    +L D+ KDTVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN+P
Sbjct: 124 EMRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G  A+IDNP+I +D LM+ I+GPDFPT A+I G  GI++ Y TGRGSI +R
Sbjct: 184 PHNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAIIQGHKGIEDTYRTGRGSITVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE+    + +I+VTE+PYQVNKA ++E IA+L R+K I  I  LRDESDR G R+V
Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN LY++T +Q  F   M+AL    P    L  IL  ++  +EEV+ R
Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGHPRILNLKQILYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA  +AH+L GL IA+ ++DEV+R IR S   E A+  L+ +           
Sbjct: 364 RSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL++RL RLTGL RD I  +   +   I    D+L
Sbjct: 413 ---------------FGLSEKQAVAILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SSR +++G++K EL   K+     RRT I   L DM+  D I  + M +T++   Y+KR+
Sbjct: 458 SSREKIMGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITLTKQNYIKRI 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R Q++GG+G SG+ M+D D+V  +   STH  +LFF++ G VY +  + +P  S 
Sbjct: 518 DSSDLRTQKKGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSR 577

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            ARG A+IN + SL   E +T ++    D S     Y++  TK+G +++  L ++  IN+
Sbjct: 578 TARGSAMINFITSLGADEHVTELLDL--DISEEGTKYLLMVTKYGYIKKTALEEYKNINK 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729
           +G IAM+L   D +++V       +I++ T+ G  +RF I    V    R++ GV G+ L
Sbjct: 636 NGLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD V+ + +    D          K  +A    + G   + T             E  
Sbjct: 696 KEGDDVVGVVVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFKKGY------EVV 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++ +SE+G   R  +        + G+G+    + + + I ++  V    
Sbjct: 750 ALVAADDRDELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDRIASIDVVSEPE 809

Query: 849 DNDQ 852
           ++++
Sbjct: 810 EDEE 813



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 82/216 (37%), Gaps = 14/216 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             ++ V+  GY+K+  L  Y+       G   + ++DED +  +  V  +  ++  +  G
Sbjct: 611 KYLLMVTKYGYIKKTALEEYK--NINKNGLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKG 668

Query: 597 FVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
              +  +    +   S  A G   + +   +                      +   +  
Sbjct: 669 MAIRFSIDDDNVRPLSRSASGVHGMRLKEGDD----------VVGVVVAAEKDIFTISAD 718

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           GN +RN  S +    R+G+  +      E++++      ++++  ++ G  +R P   I 
Sbjct: 719 GNAKRNAASAYRLQGRNGQGTINFKKGYEVVALVAADDRDELVGISEQGITIRIPADQIS 778

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
               +   GV    L +GD++ S+ +V   + D + 
Sbjct: 779 SKKAKGGQGVILQRLEEGDRIASIDVVSEPEEDEEN 814


>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
          Length = 899

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/871 (39%), Positives = 503/871 (57%), Gaps = 72/871 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 79  DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 138

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 139 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 198

Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 199 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 258

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 259 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 318

Query: 251 RGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 319 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 378

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 379 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 438

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I  + +  +A   L           
Sbjct: 439 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSE-------- 490

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AILE+ L RLT L R    +E +SL  +I +  
Sbjct: 491 ------------------YGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 532

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ VS  GY
Sbjct: 533 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 592

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 593 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 652

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 653 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAE---DRYLLMLTVNGCIKKVSLKLFSG 709

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  + RN+ GV  +
Sbjct: 710 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 768

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+                                SL+ D   +   SE
Sbjct: 769 RLKNEDKIASMDIIP------------------------------ASLRKDMEEK---SE 795

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+    V              V
Sbjct: 796 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKV-----GSGFSPFLVV 850

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             ++Q++LVS  GT+ R+ V +I I SR  +
Sbjct: 851 FSDEQVVLVSQSGTVNRIKVRDISIQSRRAR 881



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 11/254 (4%)

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L D     R   +    DS D +  ++    E  ++  ++ G   R       +   R
Sbjct: 550 IELKDRFSSPRRS-MLEDSDSGD-LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNL-QHR 606

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLK 776
            ++G     L   D +    +    D      D  I Y                      
Sbjct: 607 GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQI 666

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              S    ++         +++++L ++  G  K+ S   F  S     GI A  ++  +
Sbjct: 667 LSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLF--SGIRSTGIIAIQLNSGD 724

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           E   L  V   + +D + + S  G +     + +R  SR TKGV       ++++ S++ 
Sbjct: 725 E---LKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDI 781

Query: 897 IRESEIVDEAESTE 910
           I  S   D  E +E
Sbjct: 782 IPASLRKDMEEKSE 795


>gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 899

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/884 (38%), Positives = 507/884 (57%), Gaps = 86/884 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M ++GV  NK  VK ARI G+
Sbjct: 11  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 70

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD LARMAQD+SLR  L+ GQGNFGS+DGD PAA RYTE ++     
Sbjct: 71  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 130

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+DL K+TVD  PNYD S +EP+VL +  PN++VNG  GIAVGMATN+  HNL EV  
Sbjct: 131 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 190

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A+ +NPD+  + LME ++GPDFPTGA++ GR+GI+ AY TG G + +R  + IE  +
Sbjct: 191 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 250

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + +I+VTEIPY VNKA + +KIA+LVR+KRI  I D+RDES R   R+VIEL+R A  
Sbjct: 251 KGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAVG 309

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +V+LN L++YT LQ+ FS+  +AL    P+  TL  +L+ ++  R +V+ R T++ L KA
Sbjct: 310 EVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 369

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL IA  N+DEVV+IIR S   E A++ L  R                    
Sbjct: 370 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR-------------------- 409

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L E+Q++AI+++RLA+L GL  + +  E N L   + +  DIL  R R + I
Sbjct: 410 ------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAI 463

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           + Q+L +V D+    RRT I E + D +DED I  E+ V+T+S  GY++R+P+  ++AQ 
Sbjct: 464 MLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQN 523

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG  G  ++DED V  +F  STH+ +L F++ G VY  KV+RLP G+   +G+ ++N
Sbjct: 524 RGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVN 583

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            ++L +GE++  I+P  +    +    +VFATK G + +  L+ F +  ++G  A+ LD 
Sbjct: 584 FVALTEGEKVQAIVPVRKFGGYF---CLVFATKKGIINKMDLTLFSRPRKAGVNAISLDE 640

Query: 681 RDEILSVETC-------------------------------------------------- 690
            DE++ V+                                                    
Sbjct: 641 DDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANR 700

Query: 691 -TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              ++ +++ TK GQ V FPIS  R    R + GV+GI+LA+GD+VIS+  +   +    
Sbjct: 701 PIPKDLLMIATKNGQAVTFPISCFRAMG-RGTHGVKGITLAEGDEVISLLWLKAGNKILT 759

Query: 750 -ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                Y K        ++    +     N   V   I      E    +  ++  S+ G 
Sbjct: 760 ITEKGYGKRSEPGSYRVTRRGSKGVRNLN---VTDKIGAAVFVESVADDYDLIITSKDGQ 816

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             R  + D R++ R+ +G++A  +   + +    A+  V D +Q
Sbjct: 817 VIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQ 860



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 84/207 (40%), Gaps = 14/207 (6%)

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              ++  +  G      +           G   +  ++L +G+ + +++           
Sbjct: 704 KDLLMIATKNGQAVTFPISCFRAMGR---GTHGVKGITLAEGDEVISLLWLKAGNK---- 756

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
             ++  T+ G  +R++   +    R  K    L+  D+I   + VE+   + D+++T+K 
Sbjct: 757 --ILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKD 814

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R   + IR+  GRN+ GV+ I+L  GD V+  A  L +  D ++     K    + 
Sbjct: 815 GQVIRIKAADIRL-TGRNAQGVKAITLRDGD-VVKDATALPSVEDIEQDSADAKETFDKV 872

Query: 763 RLISGDTEEITSLKNDSSVEGNISEER 789
           + +  D + +     +    G    E 
Sbjct: 873 KGVEVDDDSVVKDDAEKQEIGPTETEE 899


>gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
 gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
          Length = 808

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/888 (36%), Positives = 492/888 (55%), Gaps = 91/888 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S +I DE+   Y+ Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++G+  N +  KC
Sbjct: 3   EILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG+A++YDAL R+AQ +S+R  L+ GQGNFGS+D DPPAA RYTE +
Sbjct: 63  ARIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAK 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L DL K+TV    N+D S  EP VL ++ PN+L+NG  GIAVGMAT+IP HN
Sbjct: 123 LSELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+    +I+NP+  +  L+ II+GPDFPTGA+I+    +   YATG+G IV+RG  
Sbjct: 183 LQEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNGNELTEVYATGKGRIVLRGKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+       +V+TEIPY V+KAA++E+IA    +   + I ++RDESD+ G R+V+E+
Sbjct: 243 HFEEGKR-FNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVEI 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            + A+A++ILN LY++TSLQ+ FSV M+ ++G +P+   L  +LKAF+  R +V+ +R +
Sbjct: 302 PKNANAEIILNNLYKHTSLQTSFSVQMLVIDGRRPKLMNLSQLLKAFIKHRFDVIRKRAE 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L     RAH+L G+  A   +  VV I+R S + E A + L++               
Sbjct: 362 YELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIE--------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + ++  Q +AIL++RL RLTGL  + ++ E + L  +I++  DILS  
Sbjct: 407 -----------ALSITNEQAKAILDMRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRD 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+  ++ QEL  +K +    RRT+I      L    ED I  ED+V+T++  GY+K   
Sbjct: 456 ERVYNVMYQELEELKKKYADERRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTS 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR+QRRGGKG  G    ++D +  +     H+  LF +S G  Y  K + + +    
Sbjct: 516 LKDYRSQRRGGKGIVGARTAEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRD 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GK +   L+L + E + T++ F E +       +V  TK G ++R  L +F      G
Sbjct: 576 TKGKPIRAYLNLEEDESVLTMISFDEWKGD-----LVLVTKSGRIKRTPLKEFENTTSRG 630

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+     D ++S    + E + I++ TK G  +RFP+  +R    R+++GV GI L +
Sbjct: 631 IRAITFSDSDVVVSATLSSSESDQIIIATKNGMAIRFPLKDVRQMG-RSAMGVIGIRLRE 689

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V                                                  
Sbjct: 690 KDEVVGMVNVPD------------------------------------------------ 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-N 850
               +   ILT++ +GFGKRT   D+R+ +R G GI+     +  + G L  +  V D  
Sbjct: 702 ----ENCEILTITVRGFGKRTPVNDYRVQSRGGVGIKTMPGVE--KAGQLCGIDIVADPK 755

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +I+++  G  IR  ++ +   SR  +GV I   + D+ V     + 
Sbjct: 756 SDVIVMTKNGQSIRFNLSTVSQLSRTARGVKIVDLSGDDEVSHFAVVE 803



 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 89/214 (41%), Gaps = 8/214 (3%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV-LHADAD 747
               E+ ++  T+ G      +   R    R   G+ G   A+ D+++++    +H+   
Sbjct: 495 LIPNEDVVITLTEKGYLKSTSLKDYRS-QRRGGKGIVGARTAEDDEILTVCTSKMHSQTL 553

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           +         +      ++G   +   ++   ++E + S          +  ++ V++ G
Sbjct: 554 FVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTMISFDEWKGDLVLVTKSG 613

Query: 808 FGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
             KRT   +F   ++R    IRA   S  + +  + A    +++DQII+ +  G  IR P
Sbjct: 614 RIKRTPLKEFENTTSRG---IRAITFSDSDVV--VSATLSSSESDQIIIATKNGMAIRFP 668

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + ++R   R+  GV+     + + VV +  + + 
Sbjct: 669 LKDVRQMGRSAMGVIGIRLREKDEVVGMVNVPDE 702


>gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
 gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
          Length = 744

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/810 (38%), Positives = 449/810 (55%), Gaps = 89/810 (10%)

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           R+AQ WSLR  L++G GNFGS   DPPAA RYTE RL   A  +L D+ +DTVDF PNYD
Sbjct: 2   RLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNYD 61

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G  QEP +L +R+PN+LVNG GGIAVGMATNIP HNL EV DG    + +PD     L+E
Sbjct: 62  GRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELLE 121

Query: 219 I----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                I+GPDFPT  +I+GR GI++AY TGRGSI +R V  +E  +  R Q+VVTE+PYQ
Sbjct: 122 ALLELIKGPDFPTAGLIVGRQGIEDAYRTGRGSIRMRAVVQVE-ENKGRTQLVVTELPYQ 180

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSL 333
           VN   + EKIAELVR+ RI  I+D+RDE+  R G R++I+LKR A A V+LN LY++T L
Sbjct: 181 VNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHTQL 240

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q  F VNM+A+    P    L  +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA
Sbjct: 241 QDTFGVNMLAIVDGVPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGLLIA 300

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LDEV+ +IR + + + AR +LM R                            LSE+Q
Sbjct: 301 LDHLDEVINLIRNAESADAARGQLMDR--------------------------FSLSEIQ 334

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             AIL+++L RL  L R  I +E   L  +I E   IL+S +R   II +EL  + D   
Sbjct: 335 AVAILDMQLRRLAALERQKIIDEAAELRAKIAELEAILASPARQREIIGEELTEIVDRFG 394

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRTR+V    DM  ED I RED+VVTV+  GY KR    +YR+QRRGGKG  G  +R+
Sbjct: 395 DERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALRE 454

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           +D V   F+ +TH  +LFF++ G VY+ K   LP  +  A+G+ + NIL+  Q ERI  +
Sbjct: 455 DDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARTAKGQHVANILAFGQDERIAEV 514

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M   + +++    Y+V AT+ G  ++  L++F      G +A+ L   DE+++    +  
Sbjct: 515 MAIKDYQAA---PYLVLATRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAG 571

Query: 694 NDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +D+LL ++  Q +RF     ++   GR + GV G+     D++++M +V           
Sbjct: 572 DDLLLVSRQAQSIRFHADDEQLRPMGRATSGVIGMRFDSDDELLAMEVVPPE-------- 623

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       E  +L  +  G+ K+T
Sbjct: 624 -------------------------------------------SEANLLVATSGGYAKQT 640

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           S  ++ +  R GKG+    +  ++  G LV    V+ +DQ+  ++  G ++R    ++R 
Sbjct: 641 SLGEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVSPDDQLYAITSNGGVLRTVARDVRR 698

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A R T GV +       +VV V R  ++E 
Sbjct: 699 AQRQTMGVRLIDLEAGVQVVGVARNADAED 728


>gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 806

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/819 (41%), Positives = 475/819 (57%), Gaps = 104/819 (12%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMA
Sbjct: 1   MRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG 
Sbjct: 61  TNIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGR 120

Query: 248 IVIRGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           I +R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+
Sbjct: 121 IYMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDK 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R
Sbjct: 181 DGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHR 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S
Sbjct: 241 REVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESS 300

Query: 426 DIKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            + ++++            D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E
Sbjct: 301 AVVEMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGE 359

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E
Sbjct: 360 YQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEE 419

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           + VVT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G
Sbjct: 420 ERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKG 479

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP------------------- 637
            VY  K + +P  S  ARG+ L+N+L L+ GE ITT++P                     
Sbjct: 480 KVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGEL 539

Query: 638 ---------EDE--------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                    E+E              ++  +T +G V++  L  F +   SG IA++LD 
Sbjct: 540 DDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDE 599

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D ++S      E +I+L +  G+  RF  S +R    R + GVRG+ L +G ++ISM  
Sbjct: 600 GDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML- 657

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                       I EE  Q        I
Sbjct: 658 --------------------------------------------IPEEGSQ--------I 665

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+G+GKRT+  +F    R G+G  A   ++ N  G LV    V D ++I+L+SD+G
Sbjct: 666 LTASERGYGKRTAISEFPEYKRGGQGGIAMVSNERN--GRLVGAVQVLDGEEIMLISDQG 723

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           TL+R  V E+    R T+GV +   A DE++V +ER++E
Sbjct: 724 TLVRTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 762


>gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
          Length = 838

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/910 (37%), Positives = 544/910 (59%), Gaps = 86/910 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            ++ +++     I  ++I  E++ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++
Sbjct: 6   DLLKNEDSLVGKIKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILYGMNEL 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +  Y K ARI G+VMGK+HPHG+++IY+A+ RMAQD++ R  L++G GN GS+DGD
Sbjct: 66  GVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLGSIDGD 125

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K +  LL ++ ++TVDF  NYDGS +EPV L + +PN+LVNG  GIA
Sbjct: 126 NAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNGSTGIA 185

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP+HNL EV+D  +  IDN +ID + LM+ I+GPDFPTG  ILG +G+K AY T
Sbjct: 186 VGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEILGISGLKEAYET 245

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R  + I  +  ++  I++ EIPYQ+ K +++EKIA LV+EK I  I DLRDES
Sbjct: 246 GRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITDLRDES 305

Query: 304 DRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +     R++IEL++     +ILN LY++T LQ+ F  NM+AL    P+  +L  +L+ F 
Sbjct: 306 NNSRGMRIIIELRKDVEPKIILNNLYKHTQLQTSFCFNMIALVNGVPKIVSLKNMLEEFF 365

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR +V+ R+ K+ LNKA+ + H++  LAI + ++++V++II+ S + + A++ +M    
Sbjct: 366 LFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNIMIN-- 423

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                       E+Q++AILE+ L ++T L    +  E   L +
Sbjct: 424 ------------------------YNFDEIQSKAILEMSLQKITNLEIKKVIKEEEILKL 459

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVT 541
           +I EC +I++S+++   I+K+ELL +K++    R++ I  E  L +E+E  I +E +++T
Sbjct: 460 KIYECENIINSQTKKEKILKKELLKIKNQFQDKRKSIISNEQYLTVENESLINKETILIT 519

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V++ GY+KR+ L  Y+ Q RGGKG SG+ M++ DF+  + I STH   LFF++ G +Y+ 
Sbjct: 520 VTNKGYIKRLNLDTYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQL 579

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P+GS  ++G  L+N+L L + E +T++    + +   N  Y+V  TK G ++RN 
Sbjct: 580 KGYEIPLGSRYSKGIPLVNLLPLEKNEFLTSLTSVKDFKEEKN--YLVLVTKKGLIKRNS 637

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L DF  + R+GKIA  L + DE+L V   T + DI+L    G+ +RF    IR   GR S
Sbjct: 638 LKDFENVRRNGKIAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQ-TGRKS 696

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI +   +++I M +V     +                                  
Sbjct: 697 SGVRGIKIKTEEEIIGMTVVDSEKQN---------------------------------- 722

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             IL ++EKG+GK T + ++R   R GKG +   ++  N  G L
Sbjct: 723 ------------------ILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRN--GKL 762

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRES 900
           V +  +  N+++I+ SD G ++R+   +I +  S+ T+G ++ S  + ++V SV  I+++
Sbjct: 763 VRLLTIYRNEELIIFSDHGKVVRIDTKQIPLTKSKVTQGNILISLEESDKVSSVALIKKT 822

Query: 901 EIVDEAESTE 910
            I  E  + E
Sbjct: 823 LIKKEESNDE 832


>gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 812

 Score =  643 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/843 (39%), Positives = 521/843 (61%), Gaps = 41/843 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +I    +    I  V +  +M+  Y+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSEELI----DIHGKIEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  +K + K A + G  M  YHPHG+++IYDA+ RMAQ++S+R +L+EG+GNFG++
Sbjct: 57  HELGLTPDKSFHKSANVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTL 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE ++ K +  +L DLGKDTV+FRPN+D   QEP VL +R+PN+LVNG  
Sbjct: 117 DGDPPAAYRYTEAKMNKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGEV+D  V +IDNPD  LD +M  I+GPDFPTGA+I+GR  IK A
Sbjct: 177 GIAVGMATSIPPHNLGEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIMGREAIKKA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE+    + +I+VTEIPYQVNKA ++EKI +LVR+K+I  + DLR
Sbjct: 237 YETGRGKIIVRAKTEIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLR 296

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DES  + G ++VIE +R  + +V+LN L++++SLQ ++SV ++++   +P+   L+ IL+
Sbjct: 297 DESSKKTGIKIVIETRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGEPKILNLVDILQ 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ +++EVV RRTK+ LNKA +R H++ GL IA+ N+DEV+ IIR + +   A ++LM 
Sbjct: 357 YYLKYQKEVVTRRTKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYD--DAMQKLMD 414

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSEVQ  AIL++RL RL GL ++ +++E   
Sbjct: 415 R--------------------------FSLSEVQATAILDMRLRRLQGLEKEKLQDEERE 448

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           LG +I     IL S  +LL IIK+E++ ++D+    RRT+I     +++ +D I  E++ 
Sbjct: 449 LGEKIAYFNSILESEEKLLSIIKEEIIEIRDKYKDVRRTQITSMPHEIDIKDTIPNEEVT 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++H GY+KR+P+  Y+AQ+RGGKG S +  ++EDFV  L I S H  +LF ++ G +Y
Sbjct: 509 ITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
               + +P  S  A+G  +IN+L L + E+I TI+   E+E   +N Y+V  TK G +++
Sbjct: 569 NLNAYEIPQTSRTAKGSNIINLLPLEKDEKIATIITTRENE---DNAYIVMCTKKGIIKK 625

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++S+F +  R G  A+ L   DE+++        ++ L TK G  + F  + +R    R
Sbjct: 626 TRISEFTKSKRQGMKAINLKEDDELVNSLLTADNTNLFLVTKKGMAIMFEENTLRPMG-R 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV  + L K D+++S+ I  +           Y K     +  +             
Sbjct: 685 TATGVIAMRLKKDDEIVSLEIASNDKQVLIISENGYGKRTQVSKYKVQSRAGVGVKTYKI 744

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +   GNI++ +  E   +   ++ ++  G   RT   +  + +R   G++     + + I
Sbjct: 745 TEKTGNIADAKIVE---ESDEVMIINSDGTLIRTPVAEISLLSRDTSGVKVMRSGENDII 801

Query: 839 GAL 841
            A+
Sbjct: 802 SAI 804



 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 106/317 (33%), Gaps = 58/317 (18%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDIL 697
           ++  N    +  T  G ++R  +  +    R GK   +M     D +  +   +    IL
Sbjct: 500 DTIPNEEVTITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTKEEDFVEKLLITSNHEKIL 559

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T  G+        I     R + G   I+L   ++   +A ++    + D     M  
Sbjct: 560 FITNKGKIYNLNAYEI-PQTSRTAKGSNIINLLPLEKDEKIATIITTRENEDNAYIVMCT 618

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYD 816
                +         +  +   ++     +E    L       +  V++KG         
Sbjct: 619 KKGIIKKTRISEFTKSKRQGMKAINLKEDDELVNSLLTADNTNLFLVTKKGMAIMFEENT 678

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK----------------- 859
            R   R+  G+ A  + K +E   +V++   +++ Q++++S+                  
Sbjct: 679 LRPMGRTATGVIAMRLKKDDE---IVSLEIASNDKQVLIISENGYGKRTQVSKYKVQSRA 735

Query: 860 ----------------------------------GTLIRVPVNEIRIASRATKGVVIFST 885
                                             GTLIR PV EI + SR T GV +  +
Sbjct: 736 GVGVKTYKITEKTGNIADAKIVEESDEVMIINSDGTLIRTPVAEISLLSRDTSGVKVMRS 795

Query: 886 AKDERVVSVERIRESEI 902
            +++ + ++E I+  E 
Sbjct: 796 GENDIISAIEIIQSEEE 812



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 88/232 (37%), Gaps = 11/232 (4%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + +D+ DE++ +     ++ +              +AI     R   G+    L   +
Sbjct: 387 LLIAIDNIDEVIEIIRSAYDDAMQKLMDRFSLSEVQATAILDMRLRRLQGLEKEKLQDEE 446

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +   I         E             +     +   +      +     E   ++ 
Sbjct: 447 RELGEKIAYFNSILESEEKLLSIIKEEIIEIRDKYKDVRRTQ-----ITSMPHEIDIKDT 501

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E+  +T++ +G+ KR     ++   R GKGI +    + + +  L      +++++I
Sbjct: 502 IPNEEVTITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTKEEDFVEKL---LITSNHEKI 558

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902
           + +++KG +  +   EI   SR  KG  I +     KDE++ ++   RE+E 
Sbjct: 559 LFITNKGKIYNLNAYEIPQTSRTAKGSNIINLLPLEKDEKIATIITTRENED 610


>gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271]
 gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271]
          Length = 717

 Score =  643 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/751 (41%), Positives = 453/751 (60%), Gaps = 68/751 (9%)

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           +  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFP
Sbjct: 1   MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIA 285
           T A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVNKA ++EKIA
Sbjct: 61  TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIA 120

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           ELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+
Sbjct: 121 ELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH 180

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN+D ++ +IR
Sbjct: 181 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 240

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAI 457
            +P P  A+  L+   W   ++  +++   D +             DG  YL+E Q +AI
Sbjct: 241 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 300

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V+++    RR
Sbjct: 301 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 360

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+
Sbjct: 361 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 420

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L + +TH  +L FSS G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  
Sbjct: 421 DRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT 480

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
           E E       V  AT +G V++  L++F ++  +GK+A+KL   DE++ V+  + E++++
Sbjct: 481 EFEEGVK---VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 537

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+ VRF  S++R     N+ GVRGI L +GD+V+S+ +     A           
Sbjct: 538 LFSAEGKVVRFKESSVRAMG-CNTTGVRGIRLGEGDKVVSLIVPRGDGA----------- 585

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     ILT ++ G+GKRT+  ++
Sbjct: 586 ------------------------------------------ILTATQNGYGKRTAVAEY 603

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I  R T
Sbjct: 604 PTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 661

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +GV++  TA+DE VV ++R+ E    ++ ++
Sbjct: 662 QGVILIRTAEDENVVGLQRVAEPVDEEDLDT 692



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 470 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 520

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 521 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 575

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 576 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 629

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 630 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 688

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 689 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 717


>gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
 gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
          Length = 1247

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/840 (36%), Positives = 478/840 (56%), Gaps = 88/840 (10%)

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + ++V    +    +GK+HPHG+ A+YDAL RMAQD+S+R  LI+GQGNFGS+DGD  AA
Sbjct: 493  DHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGSIDGDSQAA 552

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RYTE RL K +  LL D+ KDTVDFRPN+D S  EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 553  MRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGSAGIAVGMA 612

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP HNL EV      ++D+ + +   L++ ++GPDFPTGA I+    +K  Y TGRGS
Sbjct: 613  TNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINPENLKKIYETGRGS 672

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            + IR    IE+    +  IV+TE+PYQVNKAA++++IA+LV+EK+I  I+D+RDESDR+G
Sbjct: 673  VTIRAKHTIEEVRK-KTAIVITELPYQVNKAALIKQIADLVKEKKIDGISDIRDESDREG 731

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             RVVIELKR A+ +V+LN+LY++T LQ+ F+ NM+AL   +P+   L   LK F+ FR E
Sbjct: 732  IRVVIELKRDATPEVVLNKLYKFTPLQTNFNFNMIALVNGEPKLLNLKTYLKEFIEFRRE 791

Query: 368  VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V++R+T + L KA  R H+L GL IA+ N++ V+ I+R S +P  A+  L +        
Sbjct: 792  VILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIAQELLEKE------- 844

Query: 428  KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 LS+ Q++AIL+++L RLTGL R+ I +E  +L  +I+  
Sbjct: 845  -------------------FGLSQKQSKAILDMKLQRLTGLEREKIDSEYEALEKDIEYY 885

Query: 488  LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
              +LS+R     +IK+++  +       R+T IV    +++ E  I  E++V+ ++H G+
Sbjct: 886  RFVLSNREEQKRLIKEDIDEIIKNYGDERKTAIVSKESEIDIESMIEEEEVVIFLTHKGF 945

Query: 548  VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + R     Y+ Q R G G  G+  R+ DFV D+   S+   +L F++ G VY  K + +P
Sbjct: 946  IARTSAKSYKTQGRSGTGVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYWLKAYEIP 1005

Query: 608  IGSPQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                  RG+++ N L    G  + + I+P  +     +   + F T+ G V+R  LS+F 
Sbjct: 1006 KTEKSTRGQSIRNFLPGMSGAEVVSRIIPVKDFSEKKD---IFFVTQRGYVKRTSLSEFS 1062

Query: 667  QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +G  A+ L+  D ++ V    ++++ILL +K G+ +RF +  +R    R++ GV+G
Sbjct: 1063 NPRSTGINAINLEPGDRLIYVGLVEEKDNILLISKGGRAIRFHVQDVRQMG-RSARGVKG 1121

Query: 727  ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            + L + D++++  +V   D                                         
Sbjct: 1122 MLLDEEDRIMAGTVVQPDD----------------------------------------- 1140

Query: 787  EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        ++L V EKG+GKR    +F +  R GKG+ A  +S+  + G +     
Sbjct: 1141 -----------VYLLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSE--KTGKIADAIT 1187

Query: 847  VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVD 904
            + + + +I+VS  G +IRV  +++ + SR T+GV I   +K++ VVSV +++E   E  D
Sbjct: 1188 LKNEEPVIIVSRNGKIIRVNSSDVPVYSRYTRGVRIQKLSKEDVVVSVSKVQEKLEESND 1247



 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%)

Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
          + I  VSI DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+  +K Y K
Sbjct: 2  EKIIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKK 61

Query: 74 CARISGEVMGKYHP 87
           ARI GE   K   
Sbjct: 62 SARIVGECFVKGTK 75


>gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
 gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
          Length = 810

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/888 (34%), Positives = 501/888 (56%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+PNYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + D++ I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+D+AHVL GL IA+ N+DE+++II+ S   + A+  L+            
Sbjct: 365 RRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    + +E N L   IK+  +I
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDREEILTI---KNSKDFTDDAYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICISKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V                                               
Sbjct: 695 LKEGDLFVKVLAVR---------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +ND+I+LVS +   +R    ++    +  +G+ +     ++ ++SV +
Sbjct: 761 ENDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +      I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIKNSKDFTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKTVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICISKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---I 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V    VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIK--N 605

Query: 899 ESEIVDEA 906
             +  D+A
Sbjct: 606 SKDFTDDA 613


>gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
 gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
          Length = 810

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/888 (34%), Positives = 498/888 (56%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  ++VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RAKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV+++I+ S   + A+  L+            
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++  ++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDACLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                                               
Sbjct: 695 LKEGDLFVKVLALR---------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +GV +     ++ ++SV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGVQVLFLD-NDNLISVSK 807



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 106/244 (43%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + L++ DE++ V            +KL +  +  + A    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVIKVIK---------LSKLSKDAKERLVANFGLSEIQANSVLDMKLQKLT 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNISEER- 789
            +    +    +        Y   +    R+I+   EE  +L     D      I +E  
Sbjct: 435 ALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 790 ----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V   
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     + 
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIK--NSKDF 609

Query: 903 VDEA 906
            D+A
Sbjct: 610 TDDA 613



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 90/217 (41%), Gaps = 13/217 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               + ++  +     +    +   + I+ L N  + E  ++ +  ++       +LT +
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDACLLLT-T 619

Query: 805 EKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
             G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+  
Sbjct: 620 ASGKIARFESTDFKTVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAF 673

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 674 IFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLALREN 710



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +       D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDACL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKTVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 814

 Score =  641 bits (1652), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/878 (33%), Positives = 466/878 (53%), Gaps = 90/878 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DPPAA RYTE RL   A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEARLSTIAM 131

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL E++D
Sbjct: 132 ELLRDIDKRTVPFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPHNLREIID 191

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C A++ NP + +  LM I+RGPDFPTG  I+G  GI+ AYA+G+G I IR  + IE   
Sbjct: 192 ACFALMANPSMTVAELMTIVRGPDFPTGGTIMGEEGIREAYASGKGRIYIRSKAEIEDVR 251

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           G ++QIV+TEIPYQV K+ ++  +  +  EKR+  IA++RDES R G R+V+ELK+ A A
Sbjct: 252 GGKQQIVITEIPYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVELKKDADA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             IL  L++ T LQ  F+ NMVA+    P +  L  +L A++  ++EVV  RT++ L KA
Sbjct: 312 QGILAYLFKKTDLQVTFNFNMVAIVNKAPRQLGLKEMLAAYIDHQKEVVTNRTRFDLEKA 371

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            DRAHVL GL  A+  LDE++  I+ S N + A+  L+ +                    
Sbjct: 372 EDRAHVLEGLVKALNLLDEIIATIKASKNRQDAQNNLVSK-------------------- 411

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +E Q  AIL L+L RLT L    +  EL      I     IL+S  +LL +
Sbjct: 412 ------FGFTERQADAILTLQLYRLTNLEITQLEKELLETQKRIAYLQSILASEKKLLSV 465

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           I++E+L ++ +    RR+ I   + +  +  E  +  ED+++TVS  GY+KR  +  Y  
Sbjct: 466 IREEMLEIRTKFGIDRRSDIRGEVEELKVNLEVMVQSEDVLLTVSREGYIKRTTMLSY-- 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R G       ++D D V  L  V+T  S+L F+  G  +   V ++P    +  G AL
Sbjct: 524 -TRSGGELESAGVKDGDVVRHLLSVNTIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTAL 582

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N++ L++ + +  I+P  + + +  +  ++F TK G V+R +L ++     +   A K+
Sbjct: 583 VNVIPLSKEDSVIGIVPIRDFDQA--SASLLFITKRGQVKRTELKEYKSNRSTAIAACKV 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+++V       ++LL ++ G  +RFP + +     R + GVRG+ L   D+++  
Sbjct: 641 GDGDEVIAVLESNSNQELLLVSRQGMAIRFPETEVNPMG-RVAAGVRGMQLKDDDEIVGC 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A+V + + +                                                   
Sbjct: 700 ALVANDEGE--------------------------------------------------- 708

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQII 854
            +L +S+ G+GKR+   ++ I  R GKGI   +  +   +      L       +   +I
Sbjct: 709 -VLVLSDLGYGKRSLLAEYPIQGRGGKGIATFEFKEGKRVKPNGNGLTGAVYCKEEKSLI 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           L++  G    +P ++  I  R + G  + +  K++ + 
Sbjct: 768 LIAASGATWTLPTDKTPIDERRSIGKPLVTLDKNDLIT 805



 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 15/221 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                E+ +L  ++ G   R  + +  R      S GV+      GD V  +  V   D+
Sbjct: 498 VMVQSEDVLLTVSREGYIKRTTMLSYTRSGGELESAGVK-----DGDVVRHLLSVNTIDS 552

Query: 747 ----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                   +   +            +   + ++   S  +  I     ++       +L 
Sbjct: 553 LLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLSKEDSVIGIVPIRDFDQASASLLF 612

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++++G  KRT   +++ SNRS   I A  V   +E   ++AV   N N +++LVS +G  
Sbjct: 613 ITKRGQVKRTELKEYK-SNRST-AIAACKVGDGDE---VIAVLESNSNQELLLVSRQGMA 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR P  E+    R   GV       D+ +V    +   E  
Sbjct: 668 IRFPETEVNPMGRVAAGVRGMQLKDDDEIVGCALVANDEGE 708



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +  ++   T+     ++D   E    +   + +   E  +LTVS +G+ KRT+   +   
Sbjct: 467 REEMLEIRTKFGIDRRSDIRGEVEELKVNLEVMVQSEDVLLTVSREGYIKRTTMLSYT-- 524

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG- 879
            RSG  + +  V   + +  L     VN  D ++L + KG    +PV+++        G 
Sbjct: 525 -RSGGELESAGVKDGDVVRHL---LSVNTIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGT 580

Query: 880 --VVIFSTAKDERVVSVERIRESE 901
             V +   +K++ V+ +  IR+ +
Sbjct: 581 ALVNVIPLSKEDSVIGIVPIRDFD 604


>gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 817

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/885 (34%), Positives = 482/885 (54%), Gaps = 90/885 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+
Sbjct: 10  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRKSAKTVGD 69

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+A+IY+ + RMAQ W +  +LI+G GN+GS D DP AA RYTE RL + A 
Sbjct: 70  VMGNYHPHGDASIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEARLSEIAM 129

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ K TV F+ N+D + +EPVVL +R+PN+LVNG  GI+ G AT IPTHNL EV+D
Sbjct: 130 ELLRDIEKRTVLFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTHNLREVID 189

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            CVA++D P++ ++ LM II+GPDFPTG +I+G  GIK+AY +G+G I +R  + IE   
Sbjct: 190 ACVAMMDQPEMTVEQLMGIIKGPDFPTGGIIMGEEGIKDAYTSGKGRIYVRAKTSIESVR 249

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           G R+QI+VTEIPYQV K+ ++  I  +  +K++  I+++RDES R G R+V++LK+ A A
Sbjct: 250 GGRQQIIVTEIPYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVDLKKDADA 309

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             IL  L + T LQ  ++ NMVA+    P++  +  +L+A++  +++VV+ RT+Y L KA
Sbjct: 310 QGILAYLLKKTDLQVTYNFNMVAIVNKTPKQLGIREMLQAYIDHQKDVVIHRTQYDLEKA 369

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            DRAHVL GL  A+  LDE++  I+ S N + A+  L+++                    
Sbjct: 370 EDRAHVLEGLVKALNILDEIIETIKASKNRQDAQNNLVEK-------------------- 409

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +E Q  AIL L+L RLT L    +  ELN +  +I     IL S  +L  +
Sbjct: 410 ------YAFTERQADAILTLQLYRLTNLEVTSLEKELNDIMKKITHLCSILESPKKLANV 463

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           IK+E++ ++D+    RR+ I   + +  +  E  +  ED++VT+S  GY+KRV +  Y  
Sbjct: 464 IKKEMIEIRDKYGIDRRSEIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRVSILSY-- 521

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R G       +++ DFV  L  V+T  S+L F++ G  +   V ++P    +  G A+
Sbjct: 522 -TRSGGELHTTGLKEGDFVRHLLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAI 580

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N++ +++ +RI  ++P    E S  +  +VF TK G V+R +L +++    +  +A K+
Sbjct: 581 VNVIPMSKEDRIVNVIPVKNFEESGKS--LVFVTKKGQVKRTELKEYMTKRSTAVVACKV 638

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE++ VE      D+LL TK G  +RF    +     R + GVRGI L  GD+VIS 
Sbjct: 639 GDGDEVIQVEVSESNKDLLLVTKQGMSIRFREDEVNPMG-RAAGGVRGIQLKDGDEVISA 697

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +   + +                                                   
Sbjct: 698 EWIFGDEGE--------------------------------------------------- 706

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQII 854
            +L +S++G+ KRT  +D+ +  R GKGI   +  +   + +    L+A F V  +  I 
Sbjct: 707 -LLVISDRGYAKRTLVFDYPLQARGGKGILTFEFKEGKRVRSNGTELIASFLVKMDYDIT 765

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              + G  +     +  +  R   G V+    + + +  ++R+ E
Sbjct: 766 AYLNNGEQVIFSTEKAPLDDRKATGKVVIPVGRTDSITHIQRMPE 810



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 13/220 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
              T E+ ++  ++ G   R  I    +   R+   +    L +GD V  +  V   D+ 
Sbjct: 496 VMVTPEDVLVTLSQDGYIKRVSI----LSYTRSGGELHTTGLKEGDFVRHLLEVNTIDSL 551

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   +            +   I ++   S  +  ++    +  +   + ++ V
Sbjct: 552 LIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDRIVNVIPVKNFEESGKSLVFV 611

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++KG  KRT   ++  + RS   +      K+ +   ++ V     N  ++LV+ +G  I
Sbjct: 612 TKKGQVKRTELKEYM-TKRSTAVVAC----KVGDGDEVIQVEVSESNKDLLLVTKQGMSI 666

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R   +E+    RA  GV        + V+S E I   E  
Sbjct: 667 RFREDEVNPMGRAAGGVRGIQLKDGDEVISAEWIFGDEGE 706


>gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
 gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
          Length = 813

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/897 (38%), Positives = 508/897 (56%), Gaps = 91/897 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I     T+E++ SYL Y+++VI+ RAIPD+RDGLKPV RRIL+ M ++G++ N  + 
Sbjct: 2   DDKIFIKDFTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEVMGKYHPHG+AAIYDAL RM Q +++R  L+E QGNFGS+DGDPPAA RYTE
Sbjct: 62  KNARIVGEVMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +   ++L D+ K+TVDFR N+DGS  EPVVL    PN+L+NG  GIAVGM TNIP 
Sbjct: 122 ARMPELGEYMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+V     +I+ P+ ++  L++ I+GPDFPTG  ++   G+K  Y TGRG I IRG
Sbjct: 182 HNLNELVAALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDGEGLKELYETGRGKITIRG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGY 308
              IE        IV  EIPY V+KA ++E+I   V     +K+ V I D+RDESD++G 
Sbjct: 242 KYRIEDEGKG-TSIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL++ A+   ++N L+++T+LQS F V M  ++  KP    L G+L++F+  R  V
Sbjct: 301 RLVIELRKNANVKKLINDLFKHTNLQSYFYVQMNVIDNEKPSLMNLKGLLQSFLDHRVNV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KAR RAH++ GL  AV  +D VV IIR S NP+ A + L +         
Sbjct: 361 ITRRTKYELEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQE--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T+ +SE Q +AI ++RL  L+ L   ++  EL +L  +I+  +
Sbjct: 412 -----------------TIGVSEEQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAM 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGY 547
           DIL  + RLLG+IK+EL  V ++    RRT I+    D+ E+ + I  ED+V+ ++  GY
Sbjct: 455 DILQKKERLLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVIVLTKWGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +P S Y+ Q RGGKG  G+ + DED V ++   +  + ++ FSS G  Y+   + + 
Sbjct: 515 LKAIPSSEYKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIE 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                 +GK + N +SL++GE I +I+    D     +  ++  TK G V+R  L +F  
Sbjct: 575 TTLKNTKGKHIANFISLDEGEEIKSIVAISLDGDYDKD--ILIFTKQGKVKRTSLREFSS 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              SG  A+ L  +D ++ V      +  +L+ TKLG  + F  S +R    R ++GV  
Sbjct: 633 ARASGIRAINLVDKDVVVDVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTMG-RTAMGVNS 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+VI++  V                                             
Sbjct: 692 IKLREGDEVINVVKVD-------------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    + + +L ++E+G+GKR S + ++  NR G G++   V  I+ IG +VA   
Sbjct: 708 ---------EGKKLLLITERGYGKRVSFHSYKPQNRGGIGVKT--VRDISRIGPIVATMS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V D   I++ + KG  IRV VN I +  R T+GV+I    +D+ VV    ++ ++  
Sbjct: 757 VEDGRDILIFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDDSVVGAIEVQANDEE 813


>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 818

 Score =  640 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/898 (35%), Positives = 480/898 (53%), Gaps = 104/898 (11%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA+++I+GRAIPD RDGLKPVHRRIL+ M Q+ +  N  + KCAR+ GEV+GK+HPHG
Sbjct: 1   MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL-LDDLGK 148
           + A+YDAL R+AQ +S    LI+G GNFGS+D DP AA RYTECRL K +    L+DL  
Sbjct: 61  DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PN+DG+  EP VL A+ P +L+NG  GIAVGMATNIP HNL E++  C A++  
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180

Query: 209 PD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
                 +    L++++ GPDFPTGA IL   G +  Y TG G IV+R V+ IEK +  R+
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240

Query: 265 ------QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  I+VTE+PYQVNKAA+LEKIA LV EK++  IADLRDESDR G RVVIELKR A
Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALN--------GYKPERFTLIGILKAFVAFREEVVV 370
            A V+LN LY+ T LQ+ FS N +AL            P+RFTL   +  F+ FR E + 
Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R++++ L K   R+H++ GL +A+  +D V++I+R S + + AR  L             
Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIE---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           +  S  QT AIL+L+L +LT L +  + +E   L    +    +
Sbjct: 411 ----------------LGTSSEQTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L     +  ++++E + +       R++  IVE   D  D D I     V+ V+  GY+K
Sbjct: 455 LEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVIVVTRGGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGV---VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           R+PL  + +Q RG +G+ G        +  V   F  + H ++L  +  G  Y  + +++
Sbjct: 515 RMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQV 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PI    A+G+ + ++L +   E IT I+P  E     +  YVV  T+ G ++R  L  F 
Sbjct: 575 PIAGRTAKGQPIPSVLPVRGDEVITAILPVSE---FSDEEYVVLTTEQGWIKRTPLDAFE 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +++  G     L+  D +        E+DIL+ T  G   RF  + +R   GR S GVR 
Sbjct: 632 KLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRP-TGRTSRGVRA 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD +  M ++   + +Y                                      
Sbjct: 691 MKLREGDTIADMNVLSGKNKEY-------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        ILTV+ +G+GKR ++ +FR   R G G+ A    +  E   +  +  
Sbjct: 713 -------------ILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRI 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V D+++I++++ +G ++R   ++I    R+  GV++      + + SV  + + E +D
Sbjct: 760 VKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSIVPQYEEID 817


>gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
 gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
          Length = 810

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/888 (34%), Positives = 498/888 (56%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ + A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V++H  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V                                               
Sbjct: 695 LKEGDLFVKVLAVR---------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ ++SV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 105/242 (43%), Gaps = 24/242 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + L++ DE++          I+ ++KL +  +  + A    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVI---------KIIKSSKLAKDAKERLVANFGLSEIQANSVLDMKLQKLT 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNISEER- 789
            +    +    +        Y   +    R+I+   EE  +L     D      I +E  
Sbjct: 435 ALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 790 ----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +    
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IAIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E ++++ +  +   
Sbjct: 552 CVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTI-KNSKDFT 610

Query: 903 VD 904
            D
Sbjct: 611 DD 612



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD++     V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIAIALCVNSHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKTVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQ 852
              ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +       D+  
Sbjct: 555 SHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSY 614

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 615 LLLTTASGKIARFESTDFKTVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
 gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
          Length = 806

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/892 (36%), Positives = 511/892 (57%), Gaps = 93/892 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV  NK + K AR
Sbjct: 3   IYRPIEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEVMGKYHPHG+AAIYD + RMAQDW++R  LI+GQGNFGS+D DPPAA RYTE RL 
Sbjct: 63  IVGEVMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLA 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL+D+ K+TV+   N+DGS +EP VL +++PN+L NG  GIAVGM TNIP HN+ 
Sbjct: 123 KIAEELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNIT 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+V+G +A+I NP+I ++ LM  I GPDFPTG  I+G++GI+  Y TG+GS  IRG  H+
Sbjct: 183 ELVNGLIALIKNPEISIEELMNFIPGPDFPTGGEIIGKSGIREMYTTGKGSFTIRGKVHV 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +    ++ IV+TEIP+ ++KA +++KI E   +  +  I D+RDESD++G R+VIE+  
Sbjct: 243 -EEKKKKKNIVITEIPFNISKADLIKKIVEYAEKSSLP-IKDIRDESDKEGLRIVIEIPN 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKY 375
             + ++I+N LY++T LQS F   ++ ++   KP    L  ++ AFV  R EVV RR +Y
Sbjct: 301 DTNEEIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQY 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              +   +AH+L GL  A  ++D ++ +IR S +  +A  EL+                 
Sbjct: 361 YYKQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELIDM--------------- 405

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q +AI++LRL RLT L    + ++ N L  ++K   +++ +  
Sbjct: 406 -----------FNFTETQAKAIVDLRLGRLTKLEISKLIDDYNDLVNKMKVEKELIENDQ 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++   I +EL ++K E    R++ I++      +  + + I  +++V++++  GY+K + 
Sbjct: 455 KVYEKIIEELEAIKSEYGDSRKSIILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  ++ QRRGGKG +G  + D+D + ++     H   LFF+S G VY    +++   S  
Sbjct: 515 LDTFKTQRRGGKGVTGSNLMDDDAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRT 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG+ +   L++ Q E+I T++     E       + F TK+G  +R  L +F  IN  G
Sbjct: 575 SRGRQIAKYLNIGQDEKILTMLSVDNFEGE-----LFFVTKNGKAKRTSLKEFENINSRG 629

Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+  D  D ++SV+     +  IL+ TK G C+RFPIS +R    RN++GV GI L+ 
Sbjct: 630 MKAITFDGDDLLVSVQKIDNPDQTILIATKNGLCIRFPISEVRTMG-RNAMGVIGIRLSN 688

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+S ++++                                                 
Sbjct: 689 DDAVVSSSLLMDD----------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E ++LTV+ KG+GK T +  +RI  R G GI+  ++S I++ G +V V  V  N+
Sbjct: 702 -----EHYLLTVTSKGYGKLTETSQYRIQKRGGLGIK--NISDISKAGHIVGVTHVLGNE 754

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ +  G  +++ ++ +R   R TKGV + + ++ + +     IR  + V
Sbjct: 755 NMMIFTKNGMTLKINLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIRGEDDV 806


>gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
 gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
          Length = 920

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/851 (38%), Positives = 502/851 (58%), Gaps = 46/851 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EEE   +  ++++ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +N 
Sbjct: 70  EEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNA 129

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K AR+ G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGS+DGD  AA R
Sbjct: 130 QYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMR 189

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +++ L KDTVDF PNYDGS +EP VL +R PN+L++G  GIAVGMAT 
Sbjct: 190 YTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATT 249

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  VA+  N +I ++ LM+ I+GPDFPTGA ILG +GI  AY TGRG+IV
Sbjct: 250 IPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGTSGIITAYETGRGAIV 309

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  SHIE     + +I++TEIPY+V K A++EKIA L +EKRI  I+++RDE+ R+G R
Sbjct: 310 LRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIR 369

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+LK+    +VILN++ + T+LQ  ++ NM+AL   +P+   L   L  ++  + +VV
Sbjct: 370 VVIDLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVKGEPKLLNLKQALDVYLKHQIDVV 429

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L +A+DRAH+L GL IAV+N+DEV+R+IR S N   A+ +LM           
Sbjct: 430 TRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMA---------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  LSE+Q +AI+++RL RLT L  +  ++ELN+L  EI    +
Sbjct: 480 ----------------SFKLSEIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYEN 523

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S  +L+ +I  EL  +K      RRT I       ++DED I  +++ +T+S  GYV
Sbjct: 524 ILNSHEKLIDLIVSELEEIKARFGDERRTIINTSDYGIIKDEDLIPNKNIAITLSKNGYV 583

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL+ +R+Q+RGG G        +D V  +    THT +L F+S   VYK +  ++P 
Sbjct: 584 KRTPLTDFRSQKRGGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPE 643

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN +++++ E++ +++     E  +   Y++  TK+G  ++  +  + +I
Sbjct: 644 LSRQAKGVPFINFINIDKKEKVVSLLSV---EEYFEGTYLLTITKNGIAKKTSIEAYKRI 700

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +GK A+ L   DE+  V T   E+ +++    G+ V F    IR    R + GV  + 
Sbjct: 701 QSNGKFALSLKEDDELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPMG-RTASGVIAMK 759

Query: 729 LAKGDQVISMA------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           L K ++V+ +        VL        +   ++      R + G            +  
Sbjct: 760 LDKKERVVGVGKSSEGKYVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVKKAGKLNYV 819

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G +               + ++ +G   RT       ++R  KG++   +   + I ++ 
Sbjct: 820 GIVKGYEEA---------IFLTNEGIAIRTELNQVSETSRGTKGVKLITLKDKDYIASIA 870

Query: 843 AVFPVNDNDQI 853
            +     +++I
Sbjct: 871 IINTEKIDEEI 881



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 104/269 (38%), Gaps = 15/269 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ +   +       ++T++  G  K+  +  Y+  +  GK    + ++++D +  + 
Sbjct: 663 EKVVSLLSVEEYFEGTYLLTITKNGIAKKTSIEAYKRIQSNGK--FALSLKEDDELFKVI 720

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            +    SV+  ++ G V       +      A G   +  + L++ ER+  +        
Sbjct: 721 TIDDEDSVIIGANNGKVVHFDSKEIRPMGRTASG---VIAMKLDKKERVVGV------GK 771

Query: 642 SWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           S    YV+     G  ++ +L  +     N  G I++ +    ++  V       + +  
Sbjct: 772 SSEGKYVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVKKAGKLNYVGIVKGYEEAIFL 831

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD-ERICYMKHM 758
           T  G  +R  ++ +     R + GV+ I+L   D + S+AI+     D + E+   ++  
Sbjct: 832 TNEGIAIRTELNQVSE-TSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEKSLELEVS 890

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISE 787
           S     +  +   I     D   E   ++
Sbjct: 891 SGPVLDLENNNYGIQEEIEDKQDEDQETD 919


>gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 898

 Score =  639 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/849 (36%), Positives = 502/849 (59%), Gaps = 47/849 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ G+    +   M++S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+    
Sbjct: 65  ETEQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTA 124

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGS+DGD  AA R
Sbjct: 125 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMR 184

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++D + K+TVDF  NYDG+ +EP VL +R+PN+LV+G  GIAVGMATN
Sbjct: 185 YTEARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATN 244

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D   A+  NP+I +D LME +  PDFPTGA I  + G+  AY TGRGSI 
Sbjct: 245 IPPHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIFNKAGLIEAYKTGRGSIT 304

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  ++I++ +  + +I++TEIPY+V K  ++EKIA+ ++ KRI  I+D RDES+R G R
Sbjct: 305 MRAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIR 364

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI++K+ A  +VILN LY+ T LQ+ FS NM+AL   +P+   L   L+ ++  + +V 
Sbjct: 365 VVIDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGEPKLLNLKECLQVYLDHQIDVT 424

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L K   RAH+L GL I V N+D V+ II+ S     A+ +L Q          
Sbjct: 425 RRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQ---------- 474

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q +AI+++RL RLTGL  + + +EL+ +   I E   
Sbjct: 475 ----------------TFSLSEIQAKAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRA 518

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ILSS  +L+ +I +EL  VK+     RR+ I  + +  + +ED I ++++V+T+S   Y+
Sbjct: 519 ILSSHEKLIELIIKELQEVKEAYGDKRRSEIRWDVMSSINNEDLIPQKEIVITLSSNNYI 578

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR QRRGG G S V    +D + D+ + +TH  +L F+    +Y+ +   +P 
Sbjct: 579 KRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPS 638

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+ Q++G  ++NI+  + + E++  I+   + E S +   ++  T+ G +++  L ++  
Sbjct: 639 GTKQSKGTPIVNIVPTIQKNEKVVKIICVTDYEESQS---LITVTERGVIKKTNLKEYEL 695

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I ++GK A+ L   D ++ V    Q+ +I +     +  RF ++ +R    R + GV GI
Sbjct: 696 IRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAASNSRINRFNVADVREMG-RVARGVGGI 754

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+  D+V+S++          +   Y+  + A+        E     K ++     ++E
Sbjct: 755 RLSDDDKVVSVS--------SSKDGAYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLNE 806

Query: 788 ERCQELKLKE-----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           ++  +L         + ++ +++ G   R S  D  +  R+ KG++  ++        +V
Sbjct: 807 DKAGKLVYAAAVHGVEDLIIMTQSGIAIRISLRDINVIGRNAKGVKIINLK--GRSDQIV 864

Query: 843 AVFPVNDND 851
            V  + D D
Sbjct: 865 GVAKIYDED 873



 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 12/211 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              Q+  ++  +      R  +   R    R  VGV  +   + D  I   +V +  AD 
Sbjct: 562 LIPQKEIVITLSSNNYIKRIDLEEYRE-QRRGGVGVSTVKTYQDDD-IQDVVVANTHADL 619

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER-----CQELKLKEQFILTV 803
                  K    +   I   T++       + V      E+     C     + Q ++TV
Sbjct: 620 LIFTDEAKIYRVRGHEIPSGTKQSKGTPIVNIVPTIQKNEKVVKIICVTDYEESQSLITV 679

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E+G  K+T+  ++ +  ++GK   +       E   L+ V  V+ +++I + +    + 
Sbjct: 680 TERGVIKKTNLKEYELIRKNGKYALSLL-----EDDHLIDVRVVDQDEEIFIAASNSRIN 734

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           R  V ++R   R  +GV     + D++VVSV
Sbjct: 735 RFNVADVREMGRVARGVGGIRLSDDDKVVSV 765



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 100/232 (43%), Gaps = 15/232 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ +           ++TV+  G +K+  L  Y   R+ GK    + + ++D + D+ 
Sbjct: 659 EKVVKIICVTDYEESQSLITVTERGVIKKTNLKEYELIRKNGK--YALSLLEDDHLIDVR 716

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V     +   +S   + +  V  +      ARG   +  + L+  +++ ++       S
Sbjct: 717 VVDQDEEIFIAASNSRINRFNVADVREMGRVARG---VGGIRLSDDDKVVSV------SS 767

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLT 699
           S +  Y+      G  + + +  + +  R+ K  + L+     +++         D+++ 
Sbjct: 768 SKDGAYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLNEDKAGKLVYAAAVHGVEDLIIM 827

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDE 750
           T+ G  +R  +  I V   RN+ GV+ I+L  + DQ++ +A +   DA   E
Sbjct: 828 TQSGIAIRISLRDINVIG-RNAKGVKIINLKGRSDQIVGVAKIYDEDATDRE 878


>gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 827

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 316/837 (37%), Positives = 480/837 (57%), Gaps = 52/837 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+NSY+ YA++VI+ RAIPD+RDGLKPV RR+L+ +  +GV  +KK  K
Sbjct: 7   DKVQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPDKKTKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA I GE MGKYHPHG+++IY AL  M Q WS+R +LI+ QGNFGS DGD PAA RYTE 
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++ + A  +L  + KDTVDF PN+   ++EP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 127 KMSRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMATNIPPH 186

Query: 194 NLGEVVDG----CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV+D         I+  + +LD +++ I+GPDFPTGA+ILGR GI+ AY +GRG I 
Sbjct: 187 NLREVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALILGRRGIEEAYRSGRGKIK 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
           +R V  IE     + +I+V E+PY V ++ ++EK+AELV++K+I  I  + D + +    
Sbjct: 247 MRAVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAGKGSSA 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ IEL++ A+ +VILNQLY++T LQ  F V M+ +   +P    L  +L  F+  +  V
Sbjct: 307 KINIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGEPRILNLQEMLNEFLKHQINV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y LNK  +RAH+L GL  A+ ++DE+VRIIR +   E A+++L+ R        
Sbjct: 367 VTRRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIAR-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                S+ Q +AI+++RL  LTGL R  +++E   L   I    
Sbjct: 419 ------------------FAFSDAQAQAIVDMRLRALTGLERGRLQSEYEELLRRIARYR 460

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILS +  LL +I++EL  +K++    RRT+       ++DED I  +D+V++ + LGY+
Sbjct: 461 EILSDQRELLSVIREELTQLKEKFGEKRRTQFAFD-DALDDEDLIPDDDIVISSTRLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +R Q RGGKG  G+   D D + DLF+ + H  ++ F++ G  ++ K + +P 
Sbjct: 520 KRMSPENFRQQNRGGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKGYEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  +RG AL+N+L L   ER+       +  S     Y+V ATK G V++  LS +  +
Sbjct: 580 ASRTSRGTALVNLLKLQPEERVNACFSLRDLSSEQ---YLVLATKSGLVKKTPLSQYANV 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IAM +   D+++  +      +I+L TK G  +RF    IR   GR+++GVRGI 
Sbjct: 637 RKNGLIAMNIREDDQLIEAKLVDPGEEIMLVTKKGMAIRFREEDIRS-TGRSAMGVRGIR 695

Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           L  GD++I M        ++L ++  Y +     +     R         IT    D   
Sbjct: 696 LDSGDELIGMQKLSQGGYLLLVSEKGYGKLTATEEFKPQNRGGKGLHCYRITEKTGDLVG 755

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                ++R          I+ ++ +G   R S     +  R+  G++  D+ K  + 
Sbjct: 756 FKLCDQDR---------EIMLITSEGILIRMSLEKVSVIGRNTSGVKFMDLPKNGDT 803



 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 82/207 (39%), Gaps = 11/207 (5%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++ +T+LG   R      R    R   G+RG+     D +  + +  +           R
Sbjct: 510 VISSTRLGYIKRMSPENFRQ-QNRGGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGR 568

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +K         +     + +L      E   +    ++L  ++  +L  ++ G  K+
Sbjct: 569 CFRIKGYEIPEASRTSRGTALVNLLKLQPEERVNACFSLRDLSSEQYLVL-ATKSGLVKK 627

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +    ++G  + A ++ + ++   L+    V+  ++I+LV+ KG  IR    +IR
Sbjct: 628 TPLSQYANVRKNG--LIAMNIREDDQ---LIEAKLVDPGEEIMLVTKKGMAIRFREEDIR 682

Query: 872 IASRATKGVVIFSTAKDERVVSVERIR 898
              R+  GV        + ++ ++++ 
Sbjct: 683 STGRSAMGVRGIRLDSGDELIGMQKLS 709


>gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
 gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
          Length = 810

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 305/888 (34%), Positives = 498/888 (56%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ + A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS++I
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVII 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V++H  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V                                               
Sbjct: 695 LKEGDLFVKVLAVR---------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ ++SV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 105/242 (43%), Gaps = 24/242 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + L++ DE++          I+ ++KL +  +  + A    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVI---------KIIKSSKLAKDAKERLVANFGLSEIQANSVLDMKLQKLT 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNISEER- 789
            +    +    +        Y   +    R+I+   EE  +L     D      I +E  
Sbjct: 435 ALEIFKLEEELNVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 790 ----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +    
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IAIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E ++++ +  +   
Sbjct: 552 CVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTI-KNSKDFT 610

Query: 903 VD 904
            D
Sbjct: 611 DD 612



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD++     V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIAIALCVNSHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKTVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQ 852
              ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +       D+  
Sbjct: 555 SHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSY 614

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 615 LLLTTASGKIARFESTDFKTVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 883

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 311/758 (41%), Positives = 463/758 (61%), Gaps = 18/758 (2%)

Query: 1   MTEHIISSDEEEEKG-------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +         E         I  + I DE+++SYLTYA +VI+ RA+PD+RDGLKP  
Sbjct: 1   MADATTPPSGPNEPPAAGAVAPINPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQ 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M  +G+       KCA I GE M +YHPHG+A+IYD+L RMAQDW+LR  L+ G
Sbjct: 61  RRILVAMNDLGLGPASSTSKCAGIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+ G PPAA RYTE RL  AA  LL+DL +DTVDF  NYDG ++EP+VL  ++PN
Sbjct: 121 QGNFGSIAGLPPAAHRYTEARLTPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMAT+IP HNL EV    V ++DNP   L  L++II GPDFPTG +I+G
Sbjct: 181 LLVNGSDGIAVGMATHIPPHNLREVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           R G+  AYA G G I +R  + + E+  G    I+++E+P+QV + A++E+IA LV+E+R
Sbjct: 241 RQGLLEAYARGAGKITLRARAQVMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEER 300

Query: 293 IVDIADLRDESDR---QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           I D++ +RDES     +  R+++E+KRG    ++LNQLY+YT LQ   S+ M+AL   +P
Sbjct: 301 IPDVSGVRDESSARNGEPVRLIVEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRP 360

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
              TL  +L+ F+  R  V+ RRT++LL +A+ R HVL G  IA+A++++V++I R SPN
Sbjct: 361 RELTLKEMLQKFLDHRVHVIRRRTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPN 420

Query: 410 PETARRELMQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
              A+  L   +  A+ ++  I           +G+     ++E Q  A++ LRL +L  
Sbjct: 421 RAEAKARLQGLAVPAALMQRAIGEGAFAALQRELGAVAEYRMTEQQAEAVVNLRLGQLAA 480

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L  ++I  E   L   I+    +LS  + +  +I+++L  +  +    R+T + +   D+
Sbjct: 481 LESEEILKEYLQLRELIRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDV 540

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + ED IV E  VVT+SH G+VKR+ L+ YR Q RGGK      +RD DFV   F+ ST  
Sbjct: 541 DMEDLIVDEPNVVTISHEGFVKRMALTEYRVQGRGGK-GVQGGLRDNDFVEHFFVASTKA 599

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F++ G +Y  KV+R+P     + G+A+ N+LSL +GE+I++I+P  E        +
Sbjct: 600 YLLCFANTGRMYWLKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVRE---FVEGAH 656

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ AT+ G V++  L  +  + + G I + LD  DE+++V      ++++L+T+ G  +R
Sbjct: 657 LLMATRQGTVKKTDLMAYSNVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIR 716

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           F  SAIR    R + GVRGI L K D ++ M +     
Sbjct: 717 FRESAIRPMG-RTARGVRGIKLGKDDALVGMVVADPDG 753



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 13/281 (4%)

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L  + +L   E +   +   E    +  L    A  H  V R  L          +    
Sbjct: 475 LGQLAALESEEILKEYLQLRELIRGYETLLSDDANIHA-VIREDLERMAAKYGDDRKTEV 533

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D   ++   +    E +++  +  G   R  ++  RV             L   D V  
Sbjct: 534 SDDGGDVDMEDLIVDEPNVVTISHEGFVKRMALTEYRVQGRGGKG--VQGGLRDNDFVEH 591

Query: 738 MAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
             +              R+ ++K         +     I ++ + +  E   S    +E 
Sbjct: 592 FFVASTKAYLLCFANTGRMYWLKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREF 651

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            ++   +L  + +G  K+T    +    + G  I    + + +E   L+ V     ND++
Sbjct: 652 -VEGAHLLMATRQGTVKKTDLMAYSNVRQGG--IIGITLDEGDE---LINVALTRANDEV 705

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +L + KG  IR   + IR   R  +GV      KD+ +V +
Sbjct: 706 VLSTQKGMAIRFRESAIRPMGRTARGVRGIKLGKDDALVGM 746



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 74/193 (38%), Gaps = 13/193 (6%)

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY---MKHMSAQRRLISGDTEEI 772
              + +  V  + L +   + S  I+       +    Y   +   +    +I  D E +
Sbjct: 462 MTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIRGYETLLSDDANIHAVIREDLERM 521

Query: 773 TSLKNDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +   D     V  +  +   ++L + E  ++T+S +GF KR +  ++R+          
Sbjct: 522 AAKYGDDRKTEVSDDGGDVDMEDLIVDEPNVVTISHEGFVKRMALTEYRVQG----RGGK 577

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886
                + +   +   F  +    ++  ++ G +  + V  I  A R + G     + S A
Sbjct: 578 GVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKVYRIPTAGRTSPGRAIANVLSLA 637

Query: 887 KDERVVSVERIRE 899
           + E++ S+  +RE
Sbjct: 638 EGEKISSIVPVRE 650



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           +   VV  +  G V+R  L+++ +Q      +   L   D +      + +  +L     
Sbjct: 548 DEPNVVTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANT 607

Query: 703 GQCVRFPI----SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           G+     +    +A R   GR    V  +SLA+G+++ S+  V          +   +  
Sbjct: 608 GRMYWLKVYRIPTAGRTSPGRAIANV--LSLAEGEKISSIVPVREFVEGAHLLMATRQGT 665

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L++        +   +  EG   E     L      ++  ++KG   R      R
Sbjct: 666 VKKTDLMAYSNVRQGGIIGITLDEG--DELINVALTRANDEVVLSTQKGMAIRFRESAIR 723

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
              R+ +G+R   + K +   ALV +   + +  ++ V + G   R P
Sbjct: 724 PMGRTARGVRGIKLGKDD---ALVGMVVADPDGLLLTVCENGYGKRTP 768


>gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 827

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 319/905 (35%), Positives = 490/905 (54%), Gaps = 113/905 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  +  ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATN+P HN
Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNVPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+IDNPD+  + L ++I GPDFPTG  I+G TGI+ AY  G+G I++RGV+
Sbjct: 193 LGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEIIGETGIREAYTIGKGGILLRGVA 252

Query: 255 HIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+      S  R  I++TE+PYQVNKAA +EK+A+LV + R+  I+DLRDESDR+G R
Sbjct: 253 TLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQ  F   ++A+   +P + +L  +L+ F++FREE +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQPRQLSLRQLLQEFLSFREETL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA+ R H++ GL  A++NLD V+ I+R +P+  TA+  L  +         
Sbjct: 373 NRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSEVQ  AIL + L RLT L + +++ E   +  +I     
Sbjct: 424 -----------------LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQ 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-----------LLDMEDEDCIVREDM 538
           +L+ R  LL  +K++L S+K +   PRRT+I E              + E +     E+ 
Sbjct: 467 LLNDRRELLKALKKDLRSLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEA 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++  +  GYV+R        Q  G K ++   + D DF+    +  T   +L  +  G V
Sbjct: 527 ILEFTQRGYVRRT-------QPSGRKSKAENGLHDNDFIIQTVLTDTQKDLLILTGGGKV 579

Query: 599 YKEKVWRL-PIGSPQARGKALINILSLN---QGERITTIMPFPEDESSWNNLYVVFATKH 654
           Y   V  + P      RGK LI +LS       E + +    P++  +     ++  TK 
Sbjct: 580 YPVNVGEIPPTTGRSPRGKPLITMLSNTAQGAQEAVVSRFLLPDNLETQQ---MILLTKQ 636

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G ++R  L +F  + R G   +KL   DE+   +       ++L +  G+ +RF  +  +
Sbjct: 637 GRIKRLSLGEFTNLTRRGITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQ 696

Query: 715 -VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR ++G++   L K  Q++    V   D                            
Sbjct: 697 LPIMGRTAMGLQAFRLLKNQQMVGCVTVGKDD---------------------------- 728

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +L V+++G+ KR ++   R +NR   G +A   +
Sbjct: 729 -------------------------HLLLVTQEGYAKRMAASQLRAANRGDLGTQALKFA 763

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             ++   L  +     + ++ LV++K  ++R+PV  + I  R  KG  I    +DE++++
Sbjct: 764 --SKTDNLAGMVIAIASGEVALVTNKERVVRIPVETVPILGRDVKGESIIQLNRDEKIIT 821

Query: 894 VERIR 898
           V  +R
Sbjct: 822 VAEVR 826



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 83/253 (32%), Gaps = 56/253 (22%)

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T+ G VRR + S       +G     L   D I+       + D+L+ T  G+     +
Sbjct: 530 FTQRGYVRRTQPSGRKSKAENG-----LHDNDFIIQTVLTDTQKDLLILTGGGKVYPVNV 584

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             I    GR+  G   I++                                         
Sbjct: 585 GEIPPTTGRSPRGKPLITM----------------------------------------- 603

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              S     + E  +S     +    +Q IL  +++G  KR S  +F    R G      
Sbjct: 604 --LSNTAQGAQEAVVSRFLLPDNLETQQMILL-TKQGRIKRLSLGEFTNLTRRG-----I 655

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKD 888
            + K+ +   L         + +IL S  G ++R   N+  + I  R   G+  F   K+
Sbjct: 656 TILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGRTAMGLQAFRLLKN 715

Query: 889 ERVVSVERIRESE 901
           +++V    + + +
Sbjct: 716 QQMVGCVTVGKDD 728


>gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51]
 gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 808

 Score =  633 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 315/889 (35%), Positives = 479/889 (53%), Gaps = 91/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ IT  S+ + +  SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+  +K Y
Sbjct: 4   PEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+ MGKYHPHG+++IYDA  RMAQ W+ R  LI+GQGNFGS+DGD  AA RYT
Sbjct: 64  SKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   +  +  D+ KD + F+PNYD   +EP+VL + +PN+LVNGG GIAVGMA+NIP
Sbjct: 124 EMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV   +  IDNP + L+ LME ++GPDFPTG +I+G  G   AY +GRG + +R
Sbjct: 184 PHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE     +  IV+TEIP+QV+K+ +  KI       +I  I+++RDESDR+G R+V
Sbjct: 244 GKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +E K+ A    IL  LY+YT LQ  F  +N+V      P    L  I ++++  R+EVV+
Sbjct: 304 VECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRKEVVL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S  P  A+  L+ R          
Sbjct: 364 RRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SEVQ +AIL+++L  LT L  D IR E   +   I E   I
Sbjct: 414 ----------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDE--DCIVREDMVVTVSHLGY 547
           L+  +++  IIK EL  + ++    RRT I+ E + D  D        + M V ++  G+
Sbjct: 458 LADINKVYTIIKHELKQIAEQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++P    R+Q            +D D + +    ++  ++ FF+  G  Y  K   + 
Sbjct: 518 IKQIPTPTRRSQ----INAIAFAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVA 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G+A+ N+  L + ERI  ++   E++      Y VF TK G V R+ + DF+ 
Sbjct: 574 EAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKE---GQYFVFVTKDGQVMRSPVKDFLN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +   AM L  +DEI+ V     E ++ L +  GQ +RF  + +     R S GV+G+
Sbjct: 631 ARTAE--AMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMG-RKSRGVKGM 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+   ++                         G+T +                
Sbjct: 688 TLNEGDYVVDALLIQPG--------------------ADGETGD---------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++TV+E+G+ KRTS  +++   R+G+GI    +    + G LV++  V
Sbjct: 712 ------------LITVTEQGYVKRTSLVEYKPQGRAGRGIAIAKIDA-EKTGNLVSLIQV 758

Query: 848 NDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +   + ++   GT+  V    ++  SR   G  + +   ++ +V V
Sbjct: 759 GPKEDKLLHIIQAGGTVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 80/239 (33%), Gaps = 19/239 (7%)

Query: 679 DSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           D  DE+  S     ++   +L TK G      I  I     R+ +     +   GD ++ 
Sbjct: 491 DVGDEVDYSAFEEPEKPMEVLLTKKG-----FIKQIPTPTRRSQINAIAFAFKDGDVLLE 545

Query: 738 MAIVLHADADY---DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                  D  Y        Y           + +     +       E  I        +
Sbjct: 546 HVSCTSKDTLYFFTHNGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREE 605

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            + Q+ + V++ G   R+   DF     + +   A  + + +E   +V VF      ++ 
Sbjct: 606 KEGQYFVFVTKDGQVMRSPVKDF----LNARTAEAMGLKEQDE---IVKVFLSAGEGELF 658

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910
           L S +G  IR    E+    R ++GV   +  + + VV    I    + E  D    TE
Sbjct: 659 LASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTE 717


>gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 808

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 315/889 (35%), Positives = 476/889 (53%), Gaps = 91/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ IT  S+ + +  SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+  +K Y
Sbjct: 4   PEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+ MGKYHPHG+++IYDA  RMAQ W+ R  LI+GQGNFGS+DGD  AA RYT
Sbjct: 64  SKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   +  +  D+ KD + F+PNYD   +EP+VL + +PN+LVNGG GIAVGMA+NIP
Sbjct: 124 EMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV   +  IDNP + L+ LME ++GPDFPTG +I+G  G   AY +GRG + +R
Sbjct: 184 PHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE     +  IV+TEIP+QV+K+ +  KI       +I  I+++RDESDR+G R+V
Sbjct: 244 GKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +E K+ A    IL  LY+YT LQ  F  +N+V      P    L  I  +++  R EVV+
Sbjct: 304 VECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREVVL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S  P  A+  L+ R          
Sbjct: 364 RRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SEVQ +AIL+++L  LT L  D IR E   +   I E   I
Sbjct: 414 ----------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDE--DCIVREDMVVTVSHLGY 547
           L+  +++  IIK EL  + D+    RRT I+ E + D  D        + M V ++  G+
Sbjct: 458 LADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++P    R+Q            +D D + +    ++  ++ FF+  G  Y  K   + 
Sbjct: 518 IKQIPTPTRRSQ----INAIAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVA 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G+A+ N+  L + ERI  ++   E++      Y VF TK G V R+ + DF+ 
Sbjct: 574 EAGAKEKGRAVNNLFPLPEEERIVAMVSLREEKE---GQYFVFVTKDGQVMRSPVKDFLN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +   AM L  +DEI+ V     E ++ L +  GQ +RF  + +     R S GV+G+
Sbjct: 631 ARTAE--AMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMG-RKSRGVKGM 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+   ++                         G+T +                
Sbjct: 688 TLNEGDYVVDALLIQPG--------------------ADGETGD---------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++TV+E+G+ KRTS  +++   R+G+GI    +    + G LV++  V
Sbjct: 712 ------------LITVTEQGYVKRTSLEEYKPQGRAGRGIAIAKIDA-EKTGYLVSLIQV 758

Query: 848 NDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +   + ++   G +  V    ++  SR   G  + +   ++ +V V
Sbjct: 759 GPKEDKLLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 21/240 (8%)

Query: 679 DSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           D  DE+  S     ++   +L T+ G      I  I     R+ +     +   GD ++ 
Sbjct: 491 DVGDEVDYSAFEEPEKPMEVLLTRKG-----FIKQIPTPTRRSQINAIAFAFKDGDVLLE 545

Query: 738 MAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                  D      +  +    K               + +L      E  ++    +E 
Sbjct: 546 HVSCTSKDTLYFFTHSGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLREE 605

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K  + F+  V++ G   R+   DF     + +   A  + + +E   +V VF      ++
Sbjct: 606 KEGQYFVF-VTKDGQVMRSPVKDF----LNARTAEAMGLKEQDE---IVKVFLSAGEGEL 657

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910
            L S +G  IR    E+    R ++GV   +  + + VV    I    + E  D    TE
Sbjct: 658 FLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTE 717


>gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 814

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 300/886 (33%), Positives = 479/886 (54%), Gaps = 89/886 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TV+F PN+D +  EPVVL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSSIALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGEV+D  +  ID P   +D LM +I+GPDFPTG +I G+ GIK AY TG+G I+IRG 
Sbjct: 183 HLGEVIDAVIMRIDKPKCTVDELMTVIQGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G R+VIE
Sbjct: 243 AAIEQGKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++  R+EVV  R+
Sbjct: 303 LKKDADAEGILNYLYKNTDLQVPYSFNMVAIHERRPKLLSLPELLDAYIEHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L+ +             
Sbjct: 363 QYELKKAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      ++ E   L   I+E   IL+S
Sbjct: 410 -------------YEFTEAQAEAIVSLQLYRLTNTDITALQQEAEQLEKTIQELTTILNS 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL ++K +    RRT I + + +++      I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLAVIKRELKAMKKQYADERRTVIEDEIEELKINLEVMIPSEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G     M++ D +     ++T   +L F+  G      V+ LP    
Sbjct: 517 SYRSYNASNGQDFG-----MKESDRLLSQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N++ L++ + +   +P    +     L +VF TK G V+R +L  +     +
Sbjct: 572 KDVGQHISNLIPLDRDDDLIAAVPVKRFDE---PLSLVFVTKQGMVKRTELGQYKVQRYT 628

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   DE++ V     +  +LL T  G  + F  + I +   R + GV+GI+L 
Sbjct: 629 RPLVAINVKEGDEVIHVHATDGQQSLLLITNQGYGLWFDEAEISMVGVR-AAGVKGINLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+S   ++                                                
Sbjct: 688 EGDHVVSAHPIVAEG--------------------------------------------- 702

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 EQ+++ V+++G  K+    +F  ++R+ +G+      K N    + +V    ++
Sbjct: 703 ------EQYLVIVTQRGAIKKMPLSEFTKTSRAKRGVVMLRELKTNPHRIVASVLTDKND 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + + + ++ G +  + V+ +R+A R + G  I  + +   V+ + +
Sbjct: 757 EMLFIRTETGEIETLSVSSLRVADRYSNGSFIIDSDEAGNVIDMWK 802



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 84/223 (37%), Gaps = 24/223 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS--------MA 739
                E+ I+  TK G   R         +   S G +   + + D+++S        + 
Sbjct: 496 VMIPSEDVIVTVTKEGYVKRTS-----YRSYNASNG-QDFGMKESDRLLSQMEMNTTDVL 549

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++     +Y     Y       +  +      +  L  D  +   +  +R  E       
Sbjct: 550 LLFTRKGNYLYCPVYELPDIRWKD-VGQHISNLIPLDRDDDLIAAVPVKRFDE----PLS 604

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ V+++G  KRT    +++  R  + + A +V + +E   ++ V   +    ++L++++
Sbjct: 605 LVFVTKQGMVKRTELGQYKVQ-RYTRPLVAINVKEGDE---VIHVHATDGQQSLLLITNQ 660

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRESE 901
           G  +     EI +      GV   +  + + VVS    + E E
Sbjct: 661 GYGLWFDEAEISMVGVRAAGVKGINLKEGDHVVSAHPIVAEGE 703


>gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
 gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
          Length = 815

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 312/889 (35%), Positives = 498/889 (56%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 9   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ + TVDFR NYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D  V ++++  + +  L+ I++GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYNESLVKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+   D   I++T+IPY VNK+++L KIA L++E+++  I+D+RDESDR+G R
Sbjct: 249 IRSRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+E+V
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISEFIDHRKEIV 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L KARD+AH+L GL I++ ++D V+ IIRFS   + A+  +++          
Sbjct: 369 RRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDAKECIIKE--------- 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L  + +  E   +   IK+  D
Sbjct: 420 -----------------FNLSEIQANSILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S  R++ I+++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 463 ILVSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+    Y+ Q  GGKG     ++D+D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRILQDEYKLQGIGGKGLGSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G+ +  +++L + E I  I    E      + Y++  T +G + R +   F  
Sbjct: 583 DSSRTSKGQNIRELINLGETEEILAIKNCNE---LSLDNYLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I +KLD +D + S E  ++ + I+  +K G    F  + IR+   R + GV G+
Sbjct: 640 VKSRGVIVIKLDDKDFVTSAEIVSKNDKIICISKKGNAFAFNSNDIRL-THRGTQGVSGM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I                                                   
Sbjct: 699 KVREGDMLIKALSAKQG------------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+GKR          R   G      S   + GA+V    V
Sbjct: 716 ----------SHLLIVSENGYGKRLEISRVTELKRGATGYTCYKKSD-EKAGAVVDAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +D+I+LVS    ++R  V++I    +  +G+ + S  + ++++SV +
Sbjct: 765 AQDDEILLVSKTSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLMSVSK 812



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 108/266 (40%), Gaps = 20/266 (7%)

Query: 648 VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +V  TK G ++R    ++    I   G  +  L  +D++         + +L+ +  G+ 
Sbjct: 514 IVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDKDQVNIALCVNTHDFLLMISNEGKL 573

Query: 706 VRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                  I+  + R S G      I+L + ++++++      + +      Y+   +A  
Sbjct: 574 YVINAYGIK-DSSRTSKGQNIRELINLGETEEILAI-----KNCNELSLDNYLLITTANG 627

Query: 763 RLISGDTEEITSLKNDSSVEGNISE---ERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           ++   +TE   ++K+   +   + +       E+  K   I+ +S+KG     +S D R+
Sbjct: 628 KIARIETEGFKTVKSRGVIVIKLDDKDFVTSAEIVSKNDKIICISKKGNAFAFNSNDIRL 687

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           ++R  +G+    V + +    L+          +++VS+ G   R+ ++ +    R   G
Sbjct: 688 THRGTQGVSGMKVREGD---MLIKALSAKQGSHLLIVSENGYGKRLEISRVTELKRGATG 744

Query: 880 VVIFSTAK---DERVVSVERIRESEI 902
              +  +       V ++   ++ EI
Sbjct: 745 YTCYKKSDEKAGAVVDAITVAQDDEI 770



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 83/177 (46%), Gaps = 13/177 (7%)

Query: 728 SLAKGDQVISMAIVLHAD--ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            L +  +++   I  + D     +  +  ++       L  GD      + ++  ++ ++
Sbjct: 445 KLEEEFKIVLDLIKDYEDILVSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSM 504

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S+     L  +E  I+ ++++GF KR    ++++    GKG+ + D+   +++       
Sbjct: 505 SD-----LMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDKDQVNI---AL 556

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
            VN +D ++++S++G L  +    I+ +SR +KG     + +  + E +++++   E
Sbjct: 557 CVNTHDFLLMISNEGKLYVINAYGIKDSSRTSKGQNIRELINLGETEEILAIKNCNE 613


>gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1]
 gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1]
          Length = 825

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 313/913 (34%), Positives = 506/913 (55%), Gaps = 92/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +   E     I  + I  E++  +L Y+++VI+ RA+PDL+DGLKPVHRRI++ M
Sbjct: 1   MSEKNL---EHNHGIIKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K + K ARI GEV+GKYHPHG+ A+YD++ RMAQD+S R  L++G GNFGS+
Sbjct: 58  NDLGITADKPHKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K ++F++ D+  +TV F  NYD S +EP  L   +PN+L NG  
Sbjct: 118 DGDGAAAMRYTEARLAKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAM 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKN 239
           GIAVGMAT+IP HNL EV+    A IDN DI +D +++  I GPDFPTGA++     ++ 
Sbjct: 178 GIAVGMATSIPPHNLREVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIRMRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRG++ IR    +E+      + ++TEIPYQ NKA ++E+IAELV+ K++  I+D+
Sbjct: 238 GYKTGRGAVTIRAKVALEENDR-HARFIITEIPYQTNKAKLIERIAELVKTKQLEGISDI 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+ +G R+VIEL+R ++ DV+L++LY++T+LQ+ +S+N+++L+   P    L  I+K
Sbjct: 297 RDESNYEGIRIVIELRRDSNPDVVLSKLYKFTNLQTTYSLNLLSLHNNIPVLLDLKSIIK 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V F+  V+++R+ +  +K   R H+L  L  A+ N+D +V I+R SP    A+ +L +
Sbjct: 357 HYVDFQINVIIKRSIFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTE 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                          E Q +AIL++RL RL GL R  I+ E+  
Sbjct: 417 --------------------------AFGFDEEQNKAILDMRLQRLVGLERGKIQQEMAQ 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDM 538
           +   I     ++S  +    ++K +L  + ++    RRT  I EGL+D+EDE+ I     
Sbjct: 451 IKERIDYLTLLISDETEQNNVLKNQLSEIAEKFGDNRRTETIDEGLMDIEDEELIPDVKT 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++ +S  GY++RV    +R Q+RGG+G   V   +ED +    +      VLFF++ G V
Sbjct: 511 MILLSDEGYIRRVDPEEFRVQKRGGRGV-SVNSSNEDPIVIATMGKMRDWVLFFTNSGKV 569

Query: 599 YKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           ++ K + +   S  ARG  ++N L+ L  G++IT I+P    +   N  Y+ F T+ G +
Sbjct: 570 FRTKAYNIRQYSRTARGLPIVNFLNGLTAGDKITAILPLRNVKEKMN--YLTFITEKGMI 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +S F  IN++GKIA+ L   D++++V   T E+ I +  K G+ +R   + +R  +
Sbjct: 628 KKTDISLFDNINKNGKIAINLKEDDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLS 687

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV+ I L + D V+  A+      +                              
Sbjct: 688 -RTASGVKAIKLDEND-VVVGAVTSFGIEN------------------------------ 715

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 I T+S KG  K+T+  ++RIS R+GKGI+  ++++  +
Sbjct: 716 ----------------------ITTISSKGSFKKTNIDEYRISGRNGKGIKVMNLNE--K 751

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G   ++    + D + ++S  G LI+   ++I +  RA  GV     ++  ++ +V   
Sbjct: 752 TGDFKSIIAARETDLVCIISTDGNLIKTKASDIPVLGRAAAGVRGIRLSEGNKIQAVMLE 811

Query: 898 RESEIVDEAESTE 910
                 +  E  E
Sbjct: 812 YRKHGEENQEFEE 824


>gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
 gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
          Length = 814

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 300/898 (33%), Positives = 469/898 (52%), Gaps = 89/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 183 ALGEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +  I++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 243 ATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R++VV  R+
Sbjct: 303 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  L+               
Sbjct: 363 HFELKKANERKHIVEGLIKALSILDEVIATIRASSDKRDAKDRLIAN------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 410 -------------YGFTEAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL S+K +    RRT I E + +  +  E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G     M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 517 SYRSYSASNGQDIG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +++ + + + +  ++P    E+   N  +VF TKHG V+R +LS +     +
Sbjct: 572 KDVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQYQVQRYT 628

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ L   D++++V        I + T  G  + F    I +   R + GV+GI L 
Sbjct: 629 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEISLVGVR-AAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V ++  +   ++                                            
Sbjct: 688 EGDFVAAVCPICPEESGS------------------------------------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ V+++G  K+ +  +F  ++R+ +G+      K N    + AV   +  
Sbjct: 706 ---------LIVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGAVMTNDGE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + I + ++KG    V V  +R+  R   G  +  T +   V+ V +  E  +    E 
Sbjct: 757 EMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDVWKEPEKLLGKGEEE 814


>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
 gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
          Length = 845

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 312/744 (41%), Positives = 456/744 (61%), Gaps = 35/744 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  V +  E   +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 93  KERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 152

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG+ A+Y++L RMAQD+S+R  L++G GNFGSVD DPPAA RYTE
Sbjct: 153 KCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYTE 212

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL   A    L DL  +TVDF PN+D S +EP +L AR P++L+NG  GIAVGMATNIP
Sbjct: 213 CRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIP 272

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VD    +I NP+  L  L+E + GPDFPTG  ILG  GI  AY +GRG IV+R
Sbjct: 273 PHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTILGNQGILEAYKSGRGRIVVR 332

Query: 252 GVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           G + IE       R  I++ EIPYQ NKA +++KIAEL  +K +  I+D+RDESDR G R
Sbjct: 333 GKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTGMR 392

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V+
Sbjct: 393 VVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSVI 452

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +Y L++A +R H++ G+ I + NLD V+++IR + N   A   L++          
Sbjct: 453 ERRARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKE--------- 503

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q  A+L++ L RLT L R    +E   L  EI +  +
Sbjct: 504 -----------------FDLSEKQAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNE 546

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTV-SHLGY 547
           +LSS+  +  +I+QE   +K++  TPRR+ I + +  +++D D I  E+M++ + S  GY
Sbjct: 547 LLSSKELIFQLIQQEAADLKNKFSTPRRSLIDDSVSCEVDDIDIIPNEEMLLKILSEKGY 606

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++P
Sbjct: 607 AKRMNPNTFSLQHRGTIGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIP 666

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +  A G  L+ +L L+ GERIT+I+P  E      +  +V  T +G +++  L+ F  
Sbjct: 667 ECTRTATGTPLVQLLPLSDGERITSIIPVSE---FGEDQCLVMLTVNGYIKKVPLNAFSS 723

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G I+++L   DE+  V  C  ++ + L ++ G+ +      +R    RN+ GV  +
Sbjct: 724 IRSTGIISIQLVPGDELKWVRRCGNDDLVALASQKGRVIVNSCDKLRALG-RNTRGVYAM 782

Query: 728 SLAKGDQVISMAIVLHADADYDER 751
            L +GD++ +M I+        E+
Sbjct: 783 KLKEGDKMAAMDIIPATAHKMPEK 806



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 82/239 (34%), Gaps = 11/239 (4%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG- 723
           F    RS          D+I       +E  + + ++ G   R   +   +   R ++G 
Sbjct: 569 FSTPRRSLIDDSVSCEVDDI--DIIPNEEMLLKILSEKGYAKRMNPNTFSL-QHRGTIGK 625

Query: 724 -VRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            V  + L       I      H     D+ I Y              T          S 
Sbjct: 626 SVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRTATGTPLVQLLPLSD 685

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              I+         ++Q ++ ++  G+ K+     F     +G  I +  +   +E   L
Sbjct: 686 GERITSIIPVSEFGEDQCLVMLTVNGYIKKVPLNAFSSIRSTG--IISIQLVPGDE---L 740

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V    ++D + L S KG +I    +++R   R T+GV      + +++ +++ I  +
Sbjct: 741 KWVRRCGNDDLVALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEGDKMAAMDIIPAT 799



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 8/223 (3%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D + +V    +E              F +S  +  A  +    R  SL +   V    I+
Sbjct: 478 DNLDAVIQMIRETSNHTAATGALVKEFDLSEKQAEALLDITLKRLTSLERKKFVDEAKIL 537

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE--RCQELKLKEQF 799
               +  +E +   + +    +  + D +   S    S ++ ++S E      +  +E  
Sbjct: 538 SEEISKLNELLSSKELIFQLIQQEAADLKNKFSTPRRSLIDDSVSCEVDDIDIIPNEEML 597

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +  +SEKG+ KR +   F + +R   G     +   +     +       +D ++  SDK
Sbjct: 598 LKILSEKGYAKRMNPNTFSLQHRGTIGKSVGKMRLNDSTSDFI---VCQTHDHVLYFSDK 654

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
           G +      +I   +R   G   V +   +  ER+ S+  + E
Sbjct: 655 GIVYSARAYKIPECTRTATGTPLVQLLPLSDGERITSIIPVSE 697


>gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 817

 Score =  630 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 290/880 (32%), Positives = 461/880 (52%), Gaps = 90/880 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M       +K Y K A+  G+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGD 71

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+++IY+ + RMAQ W +  +LI+G GN+GS+D DP AA RYTE RL   A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAM 131

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP H+L E +D
Sbjct: 132 EILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETID 191

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C+AV+  P++ ++ LM I++GPDFPTG +I+G  GI+ AY TG+G I IR    IE   
Sbjct: 192 ACIAVMARPEMTVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIRSKVEIEDVR 251

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           G R+QI +TEIPYQV K+ ++  +  +  EK++  I+++RDES R G R+V+ELK+ A A
Sbjct: 252 GGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVELKKEADA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + IL  L + T LQ  ++ NMVA+    P++  +  IL A++  ++EVV  RT+Y L KA
Sbjct: 312 NGILAYLLKKTDLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVTHRTQYELEKA 371

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +RAHV+ GL  A+  LDEV+  I+ S N   A+  L+ +                    
Sbjct: 372 EERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAK-------------------- 411

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    SE Q  AIL L+L RLT L    +  E      +I     IL S  +LLG+
Sbjct: 412 ------YGFSERQADAILTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGV 465

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           IK EL  ++++    RR+ I   + +  +  E  +  ED++VT+S  GY+KR  +  +  
Sbjct: 466 IKDELTEIREKYGIDRRSSIRGEVEELKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSF-- 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R G       +++ D ++ ++ V+T  ++L F+  G  Y   V ++P    +  G A+
Sbjct: 524 -TRSGGDLQTAGVKEGDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAV 582

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NI+ + + + I  I+P  +   +     +VF TK   V+R +L +++    +   A K+
Sbjct: 583 VNIVPIPKDDSIVAIIPVKDF--NLPGASLVFVTKRAQVKRTELKEYMTTRSTAIAAAKV 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE++ V        +LL +KLG  +RF    +     R + GVRG+ L + D++I+ 
Sbjct: 641 AEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVNAMG-RVAAGVRGMQLREDDELIAA 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V   + +                                                   
Sbjct: 700 EWVADDEGE--------------------------------------------------- 708

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQII 854
            +L V++ G+ KRT   D+ +  R GKG++  +  +   +     ALVA     +   II
Sbjct: 709 -VLVVTDLGYAKRTLLLDYPLQGRGGKGVQTFEFKEGKRVKPNGSALVAALYCKEELGII 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ +G  +     +  I  R + G ++    K++ + ++
Sbjct: 768 ALTSQGAQLAASSEKAPIEDRKSIGRILLPMEKNDVITTI 807



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 80/221 (36%), Gaps = 15/221 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                E+ I+  ++ G   R  + +  R      + GV+     +GD + S+  V   D 
Sbjct: 498 VMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVK-----EGDAISSVYEVNTIDN 552

Query: 747 ----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                   +   +                + ++      +  ++    ++  L    ++ 
Sbjct: 553 LLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGASLVF 612

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+++   KRT   ++  +      I A  V++ +E   ++ V       Q++LVS  G  
Sbjct: 613 VTKRAQVKRTELKEYMTTR--STAIAAAKVAEGDE---VIRVTLSEGTKQLLLVSKLGMS 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR    E+    R   GV      +D+ +++ E + + E  
Sbjct: 668 IRFSEQEVNAMGRVAAGVRGMQLREDDELIAAEWVADDEGE 708


>gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 808

 Score =  630 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 329/851 (38%), Positives = 509/851 (59%), Gaps = 49/851 (5%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS
Sbjct: 1   MQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG 
Sbjct: 61  IDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  
Sbjct: 121 SGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIE 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  +HIE    +++ I++ E+PYQ NKA ++E+IAELV+E++I  I+++
Sbjct: 181 AYRTGRGRVKVRAKTHIE-KKTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEV 239

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L 
Sbjct: 240 RDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLN 299

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ 
Sbjct: 300 LFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVA 359

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            LSE+Q  AIL+++L RLTGL R+ I NEL  
Sbjct: 360 K--------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAE 393

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MV
Sbjct: 394 LMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMV 453

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y
Sbjct: 454 VTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLY 513

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+++P GS   +GKA++N+++L   E+I  I+P  + + S +   + F TK+G V+R
Sbjct: 514 WLKVYKIPEGSRTVKGKAVVNLINLQAEEKIMAIIPTTDFDESKS---LCFFTKNGIVKR 570

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS++  I   G  A+ LD  DE+++     ++ D +  T   + +             
Sbjct: 571 TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE-- 628

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
                   +L   + V +   +L A       I +      +   +S     I   + + 
Sbjct: 629 --------NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKND 680

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            + G +  E        EQ IL++S KG GKRT++ ++R+ +R GKG+    +++  +  
Sbjct: 681 ELVGAVVIEN------DEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTK 732

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L++V  V++   ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ +  +
Sbjct: 733 DLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPK 791

Query: 900 SEIVDEAESTE 910
            E  ++  S E
Sbjct: 792 EENDEDELSDE 802


>gi|108796988|ref|YP_637185.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119866072|ref|YP_936024.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
 gi|108767407|gb|ABG06129.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119692161|gb|ABL89234.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
          Length = 1257

 Score =  630 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/787 (34%), Positives = 429/787 (54%), Gaps = 90/787 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 551  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 610

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ D     ++N + D +    A+ME ++GPDFPT  +I+G  GI++ Y TGR
Sbjct: 611  IPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQGIEDTYKTGR 670

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
            GS+ +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I+++ D+S D
Sbjct: 671  GSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 730

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  
Sbjct: 731  RVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVEH 790

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++     
Sbjct: 791  QLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIE----- 845

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                  + + E+Q +AIL+++L RL  L R  I ++L  +  EI
Sbjct: 846  ---------------------LLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEI 884

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R   I++ EL  + D+    RRTRIV    ++ DED I RED+VVT++ 
Sbjct: 885  ADLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAREDVVVTITE 944

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 945  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAY 1004

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++++L+D
Sbjct: 1005 ELPEASRTARGQHVANLLAFQPNERIAQVIQIKSYE---DAPYLVLATRNGLVKKSRLTD 1061

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1062 FDSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPMGRATSG 1121

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1122 VQGMRFNADDELLSLNVVRP---------------------------------------- 1141

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRTS  ++    R GKGI      +    G LV 
Sbjct: 1142 -------------DTYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRR--RGNLVG 1186

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+   
Sbjct: 1187 ALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDS 1246

Query: 904  DEAESTE 910
             +  +T+
Sbjct: 1247 TDEVNTD 1253



 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 74/161 (45%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDG 159
             DPPAA RY      L +        +       +PN D 
Sbjct: 121 GNDPPAAMRYCVTGDALVRLPLGQSVRIDGVVPGAKPNSDN 161


>gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
 gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
          Length = 625

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 322/624 (51%), Positives = 426/624 (68%), Gaps = 26/624 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I +EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K 
Sbjct: 7   KVLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R
Sbjct: 67  ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+ KDTVDF PNYD S +EP VL A+ PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  V +IDNP++ +  LM  I+GPDFPTG +ILGR GIK AY TGRG I +R  +
Sbjct: 187 LGEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLILGRDGIKQAYTTGRGVIKMRAQA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +EK S  + +IVVTEIPYQVNKA ++E IA LVR+K I  I DLRDESDR G RVVIEL
Sbjct: 247 RVEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +ADVILNQLY++T LQ  F V M+AL   +P    L  +L  ++  +++V++RRTK
Sbjct: 307 RRDVNADVILNQLYKHTQLQETFGVIMLALVDGRPRILNLRDMLHYYLEHQKDVIIRRTK 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ +LDEV+  IR S  PE AR  L+ +              
Sbjct: 367 FELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAK-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL R+ I  E   +   I+    +L+  
Sbjct: 413 ------------FALSEKQAQAILDMRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +++GIIK ELL VK      RRT I   +  +E ED I  ED+V+T++H GYVKR+P+ 
Sbjct: 461 RKVMGIIKDELLDVKKRFGDARRTVITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVD 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G +G+  ++EDFV  LF+ +TH ++LFF++ G VY+ K + LP     A+
Sbjct: 521 TYRSQRRGGRGVTGMGTKEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAK 580

Query: 615 GKALINILSLNQGERITTIMPFPE 638
           G A+IN+L + + E+IT ++P  +
Sbjct: 581 GSAIINLLPMEKDEKITAVIPIKD 604



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 6/251 (2%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +RR K        R+  +     + D +  V T  +++      +     +F +S  +  
Sbjct: 362 IRRTKFELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAKFALSEKQAQ 421

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           A  +    R   L +         VL      +  +   + +    +    D ++     
Sbjct: 422 AILDMRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADERKVMGIIKDELLDVKKRFGDA 481

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +  ++S+   ++L   E  ++T++ +G+ KR     +R   R G+G+      + +
Sbjct: 482 RRTVITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEED 541

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVS 893
            +  L   F    +  I+  ++KG + R+   E+  A R  KG  I +     KDE++ +
Sbjct: 542 FVEHL---FVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKITA 598

Query: 894 VERIRESEIVD 904
           V  I++S   D
Sbjct: 599 VIPIKDSAPTD 609


>gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
 gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
          Length = 806

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 303/894 (33%), Positives = 480/894 (53%), Gaps = 92/894 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++ +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K 
Sbjct: 2   QQPEIFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSPIASELLRDIDKNTVEFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  ID+PD  +  LME+I+GPDFPTG +I G  GI+ AY TG+G +++
Sbjct: 182 PPHHLGEVIDAVIKRIDSPDCTVTELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKVIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + +E   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 242 RGKAEVETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++A ++EVV 
Sbjct: 302 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLTAILDAYIAHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 NRSIYELQKAKDRHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLISK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I+E   I
Sbjct: 412 ----------------FEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKNIQELESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYV 548
           L++  +LL +I   L  +K      RR+ I E + +++      +  ED+ VTV+  GY+
Sbjct: 456 LNNDKKLLKVITSSLKKLKKTYADGRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A      G     M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNGQDFG-----MKDTDRLLHQFEMNTTDVLLMFTNKGSYIYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+   N++S+++ E I   +P  E + S    Y++F TK+G V++ +L+ +   
Sbjct: 571 IRWKDMGQHFTNMISIDRDETIVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHYKAQ 627

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+ +   DE+  V     E+ + + T LG  + F    + V   R + GV+GI
Sbjct: 628 RYSKALVALNVKGDDELTDVHVTNGESQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+S  I+  AD+                                         
Sbjct: 687 NLKEGDFVVSGQILHEADS----------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++  +++G  KR S  +F  ++R+ +G+      K N   A VAVF  
Sbjct: 706 ------------LVLATQRGAVKRMSLSEFDKTSRAKRGVIMLRELKKNPHRA-VAVFAC 752

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              D+++  ++KG    + V E+R   R + G  +    +  +V++  R+ + E
Sbjct: 753 RLTDRLMFETEKGETKELLVKELRTNDRYSNGSFLIDEEEAGKVIAAWRLEKEE 806


>gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH]
 gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH]
          Length = 810

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 312/889 (35%), Positives = 496/889 (55%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 4   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 64  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  L+ D+ K TVDFR NYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 124 YTEARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D  V ++D+  + +  L+EI++GPDFPT A I+    +  AY TG+GS+V
Sbjct: 184 MAPHNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYNESLIKAYTTGKGSVV 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+   D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 244 IRARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++ AF+  R+E+V
Sbjct: 304 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISAFIEHRKEIV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +AR++AH+L GL IA+ N+D V+ IIRF+   + A+  +++          
Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKE--------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT +  + +  E   L   IK+  D
Sbjct: 415 -----------------FNLSEIQANSILDMKLQKLTSIETEKLEEEFKILLALIKDYED 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL+S  R++ I+++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 458 ILNSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+    Y+ Q  GGKG     ++D D V     V+TH  +   S+ G +Y    + + 
Sbjct: 518 IKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIK 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G+ +  +++L + E I  I    E      + Y++  T +G + R +   F  
Sbjct: 578 DTSRTSKGQNVRELINLGETEEILAIKNCNE---LSVDNYLLITTANGKIARIETEGFKT 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I +KLD  D + S E  ++   I+  +K G    F    IR+   R + GV G+
Sbjct: 635 VKARGVIVIKLDDNDFVTSAEIVSKNEKIICISKKGNAFAFNSDNIRL-THRGTQGVSGM 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I    V                                              
Sbjct: 694 KVREGDVLIKALAVKQG------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+GKR          R   G      S   + G +V    V
Sbjct: 711 ----------SHLLVVSENGYGKRLEISKVTDLKRGATGYTCYKKSD-EKAGEVVDAITV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +D+I+LVS    ++R  V++I    +  +G+ + S  + ++++SV +
Sbjct: 760 VQDDEILLVSKGAKVLRTLVDKISEQGKDARGMQVLSLDE-DKLISVSK 807



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 728 SLAKGDQVISMAIVLHAD--ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            L +  +++   I  + D     +  +  ++       L  GD      + ++  ++ ++
Sbjct: 440 KLEEEFKILLALIKDYEDILNSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSM 499

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S+     L  +E  I+ ++++GF KR    ++++    GKG+ + D+   +++       
Sbjct: 500 SD-----LMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDRDQVNI---TL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG--VV-IFSTAKDERVVSVERIRE 899
            VN +D + ++S++G L  +    I+  SR +KG  V  + +  + E +++++   E
Sbjct: 552 CVNTHDFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGETEEILAIKNCNE 608



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND---NDQI 853
             F+  +S +G     ++Y  + ++R+ KG    ++  + E   ++A+   N+   ++ +
Sbjct: 556 HDFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGETEEILAIKNCNELSVDNYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++ +  G + R+     +      +GV++     ++ V S E + ++E
Sbjct: 616 LITTANGKIARIETEGFKTVK--ARGVIVIKLDDNDFVTSAEIVSKNE 661


>gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
 gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
          Length = 815

 Score =  628 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 312/889 (35%), Positives = 500/889 (56%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ K TV+F+PNYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV D  + ++++ D+ +  L+ II+GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+ S D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+ ++
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS   + AR  +M+          
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE--------- 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L    I  +   +   IK+  D
Sbjct: 420 -----------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S SR++ +I++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV    Y+ Q  GGKG     ++D D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG+ +  +++L + E I  I    E      + Y++  T +G + R +   F  
Sbjct: 583 DSSRTSRGQNIRELINLGEKEEILAIKNCSE---LSVDNYLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I MKLD +D + S E  ++++ I+  +K G    F  + IR+   R + GV G+
Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRL-THRGTQGVSGM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I    +                                              
Sbjct: 699 KVREGDMLIKALAIKQG------------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SE G+GKR          R   G      S   + G +V    V
Sbjct: 716 ----------SHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD-EKAGEVVDAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +D+I+L+S    ++R  V++I    +  +G+ + S  + +++V+V +
Sbjct: 765 SQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVSK 812



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I+  ++L +  R  I      +   +  +  + L K   +    I             Y 
Sbjct: 402 IIRFSRLVKDARECIMREFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYE 461

Query: 756 KHMSAQRRLISGDTEEITSLK----NDSSVEGNISEE----RCQELKLKEQFILTVSEKG 807
             + +  R+++   EEI +L     +D   +    EE       +L  +E  I+ ++++G
Sbjct: 462 DILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQG 521

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           F KR    ++++    GKG+ + D+   ++   +     VN +D ++++S++G L  +  
Sbjct: 522 FIKRVLQDEYKLQGIGGKGLGSFDLQDSDQ---VNVALCVNTHDFLLMISNEGKLYVINA 578

Query: 868 NEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
             I+ +SR ++G     + +  + E +++++   E
Sbjct: 579 YGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSE 613


>gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 816

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 300/898 (33%), Positives = 469/898 (52%), Gaps = 89/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 5   ERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 65  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 185 ALGEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +  I++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 245 ATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R++VV  R+
Sbjct: 305 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  L+               
Sbjct: 365 HFELKKANERKHIVDGLIKALSILDEVIATIRASSDKRDAKDRLIAN------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 412 -------------YGFTEAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILAD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL S+K +    RRT I E + +  +  E  I  ED++VTV+  GYVKR 
Sbjct: 459 EKKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G     M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 519 SYRSYSASNGQDIG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +++ + + + +  ++P    E+   N  +VF TKHG V+R +LS +     +
Sbjct: 574 KDVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQYQVQRYT 630

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ L   D++++V        I + T  G  + F    I +   R + GV+GI L 
Sbjct: 631 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEISLVGVR-AAGVKGIQLK 689

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V ++  +   ++                                            
Sbjct: 690 EGDFVAAVCPICPEESGS------------------------------------------ 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ V+++G  K+ +  +F  ++R+ +G+      K N    + AV   +  
Sbjct: 708 ---------LIVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGAVMTNDGE 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + I + ++KG    V V  +R+  R   G  +  T +   V+ V +  E  +    E 
Sbjct: 759 EMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDVWKEPEKLLGKGEEE 816


>gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 807

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 303/887 (34%), Positives = 475/887 (53%), Gaps = 92/887 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 10  DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKT 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 70  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSP 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 130 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I  P   +D LME+I+GPDFPTG +I G  GIK AY TG+G I+IRG + IE
Sbjct: 190 VIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKAEIE 249

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ 
Sbjct: 250 TIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKE 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L
Sbjct: 310 ADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYEL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +                 
Sbjct: 370 QKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +L
Sbjct: 413 ---------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKL 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L ++K +    RR+ I E + +++      +  ED+ VTV+  GY+KR     
Sbjct: 464 LKVITNSLKALKKKYADKRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRS 523

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 524 FAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 578

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           + L NI+++++ E I   +P  E + S    Y++F TK+G V++ +L+ +         +
Sbjct: 579 QHLSNIITIDRDETIVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHYKAQRYSKALV 635

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI+L + D 
Sbjct: 636 ALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDF 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+                                                       E+ 
Sbjct: 695 VV-----------------------------------------------------SGEIL 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F      +++
Sbjct: 702 QESDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKRNPH-RVVALFACGLEQRLM 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + ++KG    +   ++R   R + G       +  +V +V R+   +
Sbjct: 761 VETEKGERKELQAKDLRTNDRYSNGSFFIDEEESGKVTAVWRLHTEQ 807


>gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 810

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 300/887 (33%), Positives = 469/887 (52%), Gaps = 89/887 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 3   ENFLPAFLEEVVGDRFGRYSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+++IY+ + RMAQ W +   LI+G GN+GS D DP AA RYTE 
Sbjct: 63  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TV F+ N+D + +EPVVL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSAIAMELLRDIEKRTVPFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D C+A+++ P++ L+ +   ++GPDFPTG +I+G  GI+ AY TG+G I +R  
Sbjct: 183 NLREVIDACIALMEKPEMTLEEIRLFVKGPDFPTGGIIMGEEGIREAYETGKGRIYLRSK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R G R+V+E
Sbjct: 243 TEIETLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  IL  L + T LQ  ++ NMVA+    P +  L  +L+A++A + EVV  RT
Sbjct: 303 LKKDADAQGILAYLLKKTDLQVTYNFNMVAIVNKAPRQLGLKAMLEAYIAHQREVVTYRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L K  DRAHVL GL  A+  LDEV+  I+ S N + A+  L                
Sbjct: 363 QYELEKLEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL---------------- 406

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AIL L+L RLT L    ++ EL  +  +I     IL S
Sbjct: 407 ----------QWMFGFTERQADAILTLQLYRLTNLEITTLQKELEDIQKKITVLRGILES 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
             +L+ +IK+EL+ ++D+    RR+ I + + +++      + +ED++VT+S  GY+KR 
Sbjct: 457 DKKLIALIKRELIEIRDKYGIDRRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +    R G  R G  +++ D++  L  V T  ++L F+  G  +   V ++P    
Sbjct: 517 SMLSF---TRSGGERDGSGVKEGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G A++N++ L + +RI +++P    + +   L +VF TK+G V+R +L ++ +    
Sbjct: 574 KDNGTAIVNVIPLAKEDRIVSVIPVKSFDENPE-LSLVFVTKNGQVKRTELKEYEKKRSG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A K+   DE+LSV       +ILL TK G  +RF    +     R S GVRGI+L  
Sbjct: 633 AVAACKVGDGDEVLSVTVSRNNQEILLLTKQGMAIRFAEDEVNPMG-RVSAGVRGINLKD 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+S   V   + +                                            
Sbjct: 692 DDEVVSALWVEGEEGE-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPV 847
                   +L VS+  + KR+   D+ + +R GKG++  +  +   +      LV     
Sbjct: 708 --------VLVVSDLAYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVGGVHC 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +   +  V+ +G +      +  IA R + G  + S  K++ +V +
Sbjct: 760 KEPVLLQAVTKEGQMHTFSSEDAPIADRKSIGKAMMSVDKNDEIVDL 806



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               QE+ ++  ++ G   R  + +  R    R+  GV+     +GD +  +  V     
Sbjct: 496 VLVAQEDVLVTISREGYIKRTSMLSFTRSGGERDGSGVK-----EGDYIKYLLEVDTLQN 550

Query: 747 ----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                   +   +            +   I ++   +  +  +S    +      +  L 
Sbjct: 551 LLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVSVIPVKSFDENPELSLV 610

Query: 803 -VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            V++ G  KRT   ++         + A  V   +E   +++V    +N +I+L++ +G 
Sbjct: 611 FVTKNGQVKRTELKEYEKKRSG--AVAACKVGDGDE---VLSVTVSRNNQEILLLTKQGM 665

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            IR   +E+    R + GV   +   D+ VVS   +   E  
Sbjct: 666 AIRFAEDEVNPMGRVSAGVRGINLKDDDEVVSALWVEGEEGE 707



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 13/120 (10%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISN--RSGKGIRATDVSKINEIGALVAVFPVN 848
           + L  +E  ++T+S +G+ KRTS   F  S   R G G++        E   +  +  V+
Sbjct: 495 EVLVAQEDVLVTISREGYIKRTSMLSFTRSGGERDGSGVK--------EGDYIKYLLEVD 546

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
               +++ + +G    +PV++I        G   V +   AK++R+VSV  ++  +   E
Sbjct: 547 TLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVSVIPVKSFDENPE 606


>gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1]
 gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1]
          Length = 792

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 309/881 (35%), Positives = 484/881 (54%), Gaps = 92/881 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  E++ SYL YA++VI+ RAIPD RDGLKPV RR+L+ M ++ V  +K Y KCA
Sbjct: 1   MEKRPVEVEIKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE MGKYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 61  RIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +++D+ ++TV+FR N+DG+  EP  L ++ PN+LVNG  GIAVGMATN+  HNL
Sbjct: 121 TQFAEDMMEDIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ D     + N    +D L++I++GPDFP G ++     +  AY TG+G ++++G   
Sbjct: 181 SEISDAIKYELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKDLIEAYRTGKGKVIVQG--- 237

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  + +  +I++  +PY VNK+ ++E IA L +   I DI D++DESDR G R+VI ++
Sbjct: 238 -EVDTSEERRIIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVR 296

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
                 +++NQLY +T L++   +  + L G +P+   L  +L  F+  R +V+++R++Y
Sbjct: 297 DEDLKPLVMNQLYEHTDLETTIGIINLVLVGNQPKLLNLKQLLDQFIDHRLDVILKRSRY 356

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K  +R  VL G+  A+ N+D VV I+R S + + A   L +                
Sbjct: 357 RLEKKNERHDVLSGVLTAIDNIDRVVEIVRGSDDVQKASETLKK---------------- 400

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  L++ Q +AILE+RL RL  + R+ + NEL S+  EI +  +I+ S  
Sbjct: 401 ----------TFNLNDRQVKAILEMRLQRLVHMERESVVNELKSIEKEIADLKEIIESEQ 450

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + + +++ E+  +K      RRT+I  + + +   ED I  E+ V+ +S+ G VKRVP+ 
Sbjct: 451 KRIEVLEGEIDEIKKRYGDKRRTKIKFKEIGERSTEDLIPNEESVIMLSYGGLVKRVPID 510

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGGKG +   M+  D V  +    +H ++ FF+S G V+K K + +P  S  + 
Sbjct: 511 EYRSQRRGGKGVNT-SMKISDTVKSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSL 569

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G +    L L Q ER+T +M  P D       ++V  T++G V++           SG  
Sbjct: 570 GVSAGAFLKLQQNERVTEVMKAPADRGE----HLVLVTRNGFVKKTPADPVFDAKSSGLK 625

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + LD  DE++S  T   + ++ + +  G+   F  S +R   GR+S+GVR + L + D 
Sbjct: 626 IITLDGDDELVSASTIDTDTNMFVLSSKGKGSVFNTSEVRE-TGRSSMGVRSMRLGEEDY 684

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++  +V                                                     
Sbjct: 685 VVTAFVVK---------------------------------------------------- 692

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            + Q IL++SEKGFGKRT+  +F + +R   G+     ++    G +    PV ++D++I
Sbjct: 693 -EGQDILSISEKGFGKRTNLSEFPVHHRGSGGVLVYRDTER--TGKISQAIPVKEDDEVI 749

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +VS     IR+  +EI   SR T GV +      +R+++V 
Sbjct: 750 IVSMNEKTIRIKASEIPETSRVTSGVKLIDLEDGDRIMAVA 790



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 90/262 (34%), Gaps = 55/262 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTK 701
            N   V+  +  G V+R  + ++    R GK +   +   D + S+  C   + I   T 
Sbjct: 490 PNEESVIMLSYGGLVKRVPIDEYRSQRRGGKGVNTSMKISDTVKSIIHCFSHDTIYFFTS 549

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  +     I     R S+GV   +  K  Q   +  V+ A AD  E           
Sbjct: 550 GGRVFKIKAYEI-PKKSRTSLGVSAGAFLKLQQNERVTEVMKAPADRGE----------- 597

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 ++ V+  GF K+T +     + 
Sbjct: 598 -------------------------------------HLVLVTRNGFVKKTPADPVFDAK 620

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            SG  I   D         LV+   ++ +  + ++S KG       +E+R   R++ GV 
Sbjct: 621 SSGLKIITLDGDDE-----LVSASTIDTDTNMFVLSSKGKGSVFNTSEVRETGRSSMGVR 675

Query: 882 IFSTAKDERVVSVERIRESEIV 903
                +++ VV+   ++E + +
Sbjct: 676 SMRLGEEDYVVTAFVVKEGQDI 697


>gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6]
 gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6]
          Length = 776

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 316/865 (36%), Positives = 478/865 (55%), Gaps = 106/865 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I+ E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+   K Y KCARI G
Sbjct: 6   EISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+AA+YDAL RMAQD+++R  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 66  DVLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDTVDF PN+D + +EP VL A+ PN+L+NG  GIAVGMATN+P HNL EV 
Sbjct: 126 EEMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVC 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +A + NPDI +  LM+ ++ PDFPTG VI+GR G+ +AY TG+G I +RG   IE  
Sbjct: 186 DAIIAYLQNPDITVRELMKYVKAPDFPTGGVIVGRKGLIDAYETGKGKITVRGRVEIEN- 244

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 I++ EIPY VNKA ++EKIAEL+   ++     +RDESDR+G R+V+E++   +
Sbjct: 245 ----NTIIIREIPYMVNKARLVEKIAELINSGKLEAKT-VRDESDREGIRIVVEVREDIN 299

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
               L +LY YT+LQ+ F +  +AL   +P   +L  +++ +V  R  VV RRT+Y L K
Sbjct: 300 --TALKKLYAYTNLQTTFGIINLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKK 357

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A++R H++ GL  A+ ++D V+++I+ S +P  A+  LM+R                   
Sbjct: 358 AKERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMER------------------- 398

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+ RL +LT +  D +  E   L  +IKE  +IL+S  R+  
Sbjct: 399 -------YELSEVQADAILQTRLQKLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDA 451

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II  EL  +K++    RRT IVE   ++  E+ +  E+ ++ V+  G+VKR+ +  ++ Q
Sbjct: 452 IIASELEEIKEKYGDERRTEIVEEDGEISAEELVSFEENILIVTKNGFVKRMSIG-FKTQ 510

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGG G  G+ MR +D    +   ++   +L F++    Y    + +P      +G  + 
Sbjct: 511 HRGGVGVIGIGMRGDDEPAIIVKCNSRDKLLVFTAS-KAYWLNAYEIPKQERTGKGVNIR 569

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
             LS+ +GERI  I+PF   E       ++  T+ G ++R  LS+F    R+G +A    
Sbjct: 570 MYLSIPEGERIVAIVPFQNFEGD-----ILILTEDGYIKRTPLSEFENAKRAGIVASGGK 624

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
                ++        ++ + T  G  VRF    +  +  R++ GV+ ISL +GD +    
Sbjct: 625 -----IAFARHLDGKEVFIATTNGYAVRFKAEDVPEYG-RSAKGVKAISLRQGDSI---- 674

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                               A    I GD +                             
Sbjct: 675 --------------------AWLSCIRGDGD----------------------------- 685

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT++  G GKRT+  ++R+ +R   G+           G +V    V  ++ ++ +S  
Sbjct: 686 ILTLTADGHGKRTAVEEYRLVSRGAMGVINA------RSGGVVFSEYVEGDEDLLTISKD 739

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884
           G  +++ V  I    R  +GV++  
Sbjct: 740 GYALKIEVKSIPRQGRNARGVIVSR 764



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 26/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I+ L     E I  I  + E  +S   +  + A++   ++     +     R+      +
Sbjct: 422 IDALMKEYEELIQKIKEYEEILASPQRIDAIIASELEEIKEKYGDE----RRTEI----V 473

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---V 735
           +   EI + E  + E +IL+ TK G   R  I        R  VGV GI +   D+   +
Sbjct: 474 EEDGEISAEELVSFEENILIVTKNGFVKRMSI--GFKTQHRGGVGVIGIGMRGDDEPAII 531

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +              +  ++      ++  +G    I    +    E  ++    Q    
Sbjct: 532 VKCNSRDKLLVFTASKAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPFQNF-- 589

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  IL ++E G+ KRT   +F  + R+G              G  +A     D  ++ +
Sbjct: 590 -EGDILILTEDGYIKRTPLSEFENAKRAGIVAS----------GGKIAFARHLDGKEVFI 638

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +  G  +R    ++    R+ KGV   S  + + +  +  IR
Sbjct: 639 ATTNGYAVRFKAEDVPEYGRSAKGVKAISLRQGDSIAWLSCIR 681


>gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
 gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
          Length = 815

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 312/889 (35%), Positives = 500/889 (56%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ K TV+F+PNYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV D  + ++++ D+ +  L+ II+GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+ S D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+ ++
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS   + AR  +M+          
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE--------- 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L    I  +   +   IK+  D
Sbjct: 420 -----------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S SR++ +I++E++++  +    RRT+I+  E +L     D + RE+++V ++  G+
Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV    Y+ Q  GGKG     ++D D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG+ +  +++L + E I  I    E      + Y++  T +G + R +   F  
Sbjct: 583 DSSRISRGQNIRELINLGEKEEILAIKNCSE---LSVDNYLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I MKLD +D + S E  ++++ I+  +K G    F  + IR+   R + GV G+
Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRL-THRGTQGVSGM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I    +                                              
Sbjct: 699 KVREGDMLIKALAIKQG------------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L +SE G+GKR          R   G      S   + G +V    V
Sbjct: 716 ----------SHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD-EKAGEVVDAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +D+I+L+S    ++R  V++I    +  +G+ + S  + +++V+V +
Sbjct: 765 SQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVSK 812



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I+  ++L +  R  I      +   +  +  + L K   +    I             Y 
Sbjct: 402 IIRFSRLVKDARECIMREFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYE 461

Query: 756 KHMSAQRRLISGDTEEITSLK----NDSSVEGNISEE----RCQELKLKEQFILTVSEKG 807
             + +  R+++   EEI +L     +D   +    EE       +L  +E  I+ ++++G
Sbjct: 462 DILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQG 521

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           F KR    ++++    GKG+ + D+   ++   +     VN +D ++++S++G L  +  
Sbjct: 522 FIKRVLQDEYKLQGIGGKGLGSFDLQDSDQ---VNVALCVNTHDFLLMISNEGKLYVINA 578

Query: 868 NEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899
             I+ +SR ++G     + +  + E +++++   E
Sbjct: 579 YGIKDSSRISRGQNIRELINLGEKEEILAIKNCSE 613


>gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 854

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 346/851 (40%), Positives = 514/851 (60%), Gaps = 90/851 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + GI  V +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ +  
Sbjct: 86  DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 145

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  L++G GNFGS+DGD  AA R
Sbjct: 146 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 205

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD S +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 206 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 265

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  +A+ +NP+ID+  LME + GPDFPTGA+ILG  GIK+AY TG+GSI 
Sbjct: 266 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIP 325

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR ++ IE+ S  + +I+VTEIPY+V K A++EKIAELV++K+I  IADLRDES R+G R
Sbjct: 326 IRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIR 385

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+  +  V+LN+LYR T+LQ  ++VN VAL   +P+   L   L+ ++  +EEVV
Sbjct: 386 IVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVV 445

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KA+DR H+L GL IAV N+DEV+ II+ S     A+  L +R         
Sbjct: 446 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR--------- 496

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLTGL  +++  E+  L  EI+    
Sbjct: 497 -----------------FNLTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEF 539

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL++ S L+ +I +EL  +K++ +  RRT+I   +   + DED I + D+V+T S  G+V
Sbjct: 540 ILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTITDEDLIPQRDIVITTSAKGFV 599

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G   +   D+D +  +   +THT +L FS+   VY+ +   +P 
Sbjct: 600 KRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPE 659

Query: 609 GSPQARGKALINILS---LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            S Q++G A INI+    + +GERI +++P    ++   + Y+  ATK+G +++ +L+++
Sbjct: 660 LSRQSKGVAFINIIPSLRVKEGERIVSMLPV---DTYDEDHYLFTATKNGIIKKTRLTEY 716

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +IN +GK A  L   DE++     T E+ ILL     + V+F     R  + R + GV+
Sbjct: 717 ERINANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVK 775

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L     V S +                                              
Sbjct: 776 GITLDSHQTVSSTS---------------------------------------------- 789

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     + + ILT+ +KGFGK T    FR+  R GKG++  +       G +V   
Sbjct: 790 -------TSQEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSK---LAGDIVFAR 839

Query: 846 PVNDNDQIILV 856
            VN  D+++L+
Sbjct: 840 FVNPQDELLLL 850



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 64/277 (23%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRDEILSVETCTQ 692
              +++       V+  +  G V+R  L ++    R G     MK    D+I S+ T T 
Sbjct: 577 TITDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTT 636

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS------LAKGDQVISMAIVLHADA 746
             D+LL +   +  R     I   + R S GV  I+      + +G++++SM  V   D 
Sbjct: 637 HTDLLLFSNHARVYRVRAHEIPELS-RQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDE 695

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D                                                   ++ T ++ 
Sbjct: 696 D--------------------------------------------------HYLFTATKN 705

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+T   ++   N +GK   A ++ + +E   L+    + D D I+L +D+  +++  
Sbjct: 706 GIIKKTRLTEYERINANGK--YAFNLREGDE---LIRAMIITDEDLILLANDEERIVKFQ 760

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             + R  SR   GV   +    + V S    +E E++
Sbjct: 761 AIDFRPISRTATGVKGITLDSHQTVSSTSTSQEGELI 797



 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 65/160 (40%), Gaps = 12/160 (7%)

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                +K +  +   I     +    + +  ++G I++E   +L  +   ++T S KGF 
Sbjct: 543 NHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTITDE---DLIPQRDIVITTSAKGFV 599

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KR    +++   R G GI        ++I +++      D       S+   + RV  +E
Sbjct: 600 KRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLL---FSNHARVYRVRAHE 656

Query: 870 IRIASRATKGVVIFS------TAKDERVVSVERIRESEIV 903
           I   SR +KGV   +        + ER+VS+  +   +  
Sbjct: 657 IPELSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDED 696


>gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis]
 gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
 gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
          Length = 911

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 320/849 (37%), Positives = 507/849 (59%), Gaps = 45/849 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E  G+   +++  M+ S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +  
Sbjct: 72  DKEINGLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTA 131

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGSVDGD  AA R
Sbjct: 132 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMR 191

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++D + K+TVDF  NYD + +EPVVL +R+PN+LV+G  GIAVGMATN
Sbjct: 192 YTEARMSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATN 251

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D   A+  NP+I++  LME I+ PDFPTG +I  + G+  AY+TGRGSI 
Sbjct: 252 IPPHNLGETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIFNKKGLIEAYSTGRGSIT 311

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  +HI++ S  + +I+VTEIPY+V K  ++EKI+EL+++K+I  IAD RDES+R G R
Sbjct: 312 IRSKAHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIR 371

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+    +++LN L++ T LQS +S NM+AL   +P+   L   L+ ++  + EVV
Sbjct: 372 IVIDIKKSFVPEIVLNNLFKLTKLQSNYSFNMIALVNNEPKLLNLKACLEVYLKHQIEVV 431

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L K R RAH+L GL I + N+D V++II+ S   + A+ +L Q          
Sbjct: 432 SRRLKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQ---------- 481

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+QT+AI++++L RLTGL  + +  ELN +   I   + 
Sbjct: 482 ----------------AFNLSEIQTKAIVDMKLGRLTGLAIEKMNEELNEVHERIANYIK 525

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL   + L+ +I +EL  +K+     RR+ I  + L  +++ED I + D+V+T+++ GY+
Sbjct: 526 ILGDHNLLINLIIEELQEIKNAYGDARRSDINWDELSSIDNEDLIPKRDIVITLTNNGYI 585

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  YR QRRGG G S      +D + D+ + +THT +L F+ L  VY+ +   +P+
Sbjct: 586 KRLDIEEYREQRRGGVGVSTTKTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPV 645

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+ Q++G  ++N++  + + E++  I+P  E +    N Y++ ATK G V++     F  
Sbjct: 646 GTKQSKGIPIVNVIPSIQKNEKVIKILPINEYKQ---NEYLLTATKKGIVKKTPTILFES 702

Query: 668 INRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           INR+GKIA  + D  D+++       E++I +     +  RF  + IR    R + GV+G
Sbjct: 703 INRNGKIAFAIRDDDDKLIDALIVKDEDEIFIAASNNKICRFDSNEIRSMG-RMAYGVKG 761

Query: 727 ISLAK-GDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           I +    D V+S++         +   E    +   +  R+   G +   +  +  S   
Sbjct: 762 IKIDDVEDNVVSVSSSNQGKYIFSLGKEGYGKLTLAAMFRKTRRGASGVYSLNEEKSGKL 821

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +     E       ++ ++  G   R S  D  I+ R+ KG++  ++        +V
Sbjct: 822 IYAATVHGVE------DLIVLTSDGVAIRFSLKDVAITGRNTKGVKLVNLK--GRTTNIV 873

Query: 843 AVFPVNDND 851
           A   + D+D
Sbjct: 874 AATKILDDD 882



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 98/253 (38%), Gaps = 13/253 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E ++ +   +   + + ++T +  G VK+ P  ++ +  R GK  +  +  D+D + D  
Sbjct: 666 EKVIKILPINEYKQNEYLLTATKKGIVKKTPTILFESINRNGK-IAFAIRDDDDKLIDAL 724

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           IV     +   +S   + +     +      A G   I I  +     + ++       S
Sbjct: 725 IVKDEDEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDN--VVSV------SS 776

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLT 699
           S    Y+    K G  +    + F +  R  SG  ++  +   +++   T     D+++ 
Sbjct: 777 SNQGKYIFSLGKEGYGKLTLAAMFRKTRRGASGVYSLNEEKSGKLIYAATVHGVEDLIVL 836

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHM 758
           T  G  +RF +  +    GRN+ GV+ ++L      +++   +L  D + ++R       
Sbjct: 837 TSDGVAIRFSLKDV-AITGRNTKGVKLVNLKGRTTNIVAATKILDDDLEDNDRKLSENEF 895

Query: 759 SAQRRLISGDTEE 771
                    +  +
Sbjct: 896 KEIESDAENNLNQ 908


>gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii]
 gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii]
          Length = 877

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 316/907 (34%), Positives = 504/907 (55%), Gaps = 88/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  +  E    I +  +  EM  SY+ YA++VI GRA+PD+RDG+KPVHRRILF M
Sbjct: 45  MSK-IEGNAPESLGKIITTDLNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAM 103

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  +  + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R +LI G GNFGS+
Sbjct: 104 NELGLNPDTPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSI 163

Query: 121 DGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTEC++ K +   LL D+GK T D+  N+DGS  EP VL +  P +L+NG 
Sbjct: 164 DHDPPAAMRYTECKISKLSKEILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGS 223

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL E++     +I+ P +    L+++I  PDFPTG  ILG  G   
Sbjct: 224 SGIAVGMATNIPPHNLTEILRAVDGLIEEPQMSEKKLLKLIPAPDFPTGGSILGLQGCSK 283

Query: 240 AYATGRGSIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y  G+GSI++RG +H E        +R  I++TE+P+Q+NKA+++ KIAELV EK +  
Sbjct: 284 LYKNGQGSIIVRGKTHFETILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDG 343

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DLRDESDR G R+VIELK+  + +VILN L++ T LQ+ F  +++AL G +P   +L 
Sbjct: 344 IVDLRDESDRNGIRIVIELKKDTNKEVILNNLFKKTPLQTSFGGHILALVGQQPATLSLK 403

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  F+ FR++ + RR ++ LN + ++ H++ GL + + +++ +++++R S N   A+ 
Sbjct: 404 ELLLLFIQFRKKTIRRRLQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKI 463

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                             L++ Q+ AIL ++L RLT L  + + N
Sbjct: 464 ILMES---------------------------GLTQNQSDAILNIQLRRLTRLESNKLNN 496

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L   IK     L+    L   IK++L  +      PRRT +V  E    +++ + I
Sbjct: 497 EYEILNNTIKNLKKPLALPEELSKNIKKDLFEISILFGMPRRTNVVHSETSGSIDEMEMI 556

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +V V+   ++KR+ +  +  Q RG +G+ GV+++++D ++  F  + H ++L  S
Sbjct: 557 DNHATIVMVTKF-FIKRMVVETFEPQTRGTRGKKGVMIQEDDEISHFFSCNNHDTILCIS 615

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G  +  + +++PI    A+G AL  +L      +I++I+P     S     Y++  TK
Sbjct: 616 QNGIAFAFRAYQIPISRRTAKGVALSAVLPNITTGKISSIIPVSVFSSE---KYLILLTK 672

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G +++  L  F  I   G   +K+   DE+  V  C+ E+ IL++TK G+ +RF  +  
Sbjct: 673 NGMIKKTPLIAFKNITARGLTVLKVGEEDELCWVRKCSLEDSILISTKNGKALRFLTNEK 732

Query: 714 RVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           ++   GRNS GV+ I++ K D +I M ++  +                            
Sbjct: 733 QLRATGRNSKGVKSITIEKNDTIIDMDVLSTS---------------------------- 764

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                              + K ++ +IL +++ GFGK+ +  DFRI NR GKG+    +
Sbjct: 765 -------------------KTKHQDCYILAITKNGFGKKINHSDFRIQNRGGKGVTVIKL 805

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K +    L   F V +  +I++ +  GT++R  +  I I  +  +GV++    + + V 
Sbjct: 806 QKKDNDELLSLRFCVKE-QEILMSTKNGTILRQKIEAITIQKKNARGVIVQKLMEGDYVS 864

Query: 893 SVERIRE 899
            V  I E
Sbjct: 865 KVSLISE 871



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 98/270 (36%), Gaps = 58/270 (21%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
              E E   N+  +V  TK   ++R  +  F    R   GK  + +   DEI    +C  
Sbjct: 549 SIDEMEMIDNHATIVMVTKF-FIKRMVVETFEPQTRGTRGKKGVMIQEDDEISHFFSCNN 607

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + IL  ++ G    F    I   + R + GV            +++ VL          
Sbjct: 608 HDTILCISQNGIAFAFRAYQI-PISRRTAKGV------------ALSAVLPN-------- 646

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                         G IS      +   E++++ +++ G  K+T
Sbjct: 647 ---------------------------ITTGKISSIIPVSVFSSEKYLILLTKNGMIKKT 679

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--I 870
               F+  N + +G+    V + +E   L  V   +  D I++ +  G  +R   NE  +
Sbjct: 680 PLIAFK--NITARGLTVLKVGEEDE---LCWVRKCSLEDSILISTKNGKALRFLTNEKQL 734

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900
           R   R +KGV   +  K++ ++ ++ +  S
Sbjct: 735 RATGRNSKGVKSITIEKNDTIIDMDVLSTS 764


>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 745

 Score =  625 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 325/710 (45%), Positives = 473/710 (66%), Gaps = 32/710 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K ARI
Sbjct: 42  NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARI 101

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE R+ K
Sbjct: 102 VGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAK 161

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               LL D+GKDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 162 ITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVDG VA+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G   IE
Sbjct: 222 VVDGIVALIDNPEISIDELIGYIKGPDFPTGGIINGKQGIYDAYKTGRGKLRVAGRVEIE 281

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +   R+ IVVTE+PYQVNK+ ++EKIA+LV++K++  I+DLRDE+DR G R+VIELK+G
Sbjct: 282 TSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLRDETDRDGIRIVIELKKG 341

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +++ILN LY++T LQ+ F V M+AL    P    L  +L+ ++  R EV+ RRT++ L
Sbjct: 342 EESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEFEL 401

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +                 
Sbjct: 402 KKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELIDK----------------- 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q +AIL++RL RLTGL RD I  E N L   I++ + ILS  S++
Sbjct: 445 ---------FEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKI 495

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +  YR
Sbjct: 496 YGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGG G +     ++D V D++I     ++L F++ G V+  KV+ +P    QARGK 
Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NI++L+  E+++TI+   E E    N  + F T++G V++++L+ F  I ++GK A++
Sbjct: 616 IGNIINLDNDEKVSTIIKVREFE---KNRNLFFVTRNGVVKKSELTLFSNIMKAGKRAIR 672

Query: 678 LDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           L+  DE++ +     + E++I   T+ G  ++F    +R     ++VGVR
Sbjct: 673 LNDDDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSMGT-SAVGVR 721



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 104/256 (40%), Gaps = 24/256 (9%)

Query: 658 RRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           RR +       NR+  +    + LD+ +E++          I+  +K     R  +    
Sbjct: 395 RRTEFELKKARNRAHILEGFKIALDNIEEVI---------RIIRASKDANVARVELIDKF 445

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            F+   +  +  + L +   +    I    +         M  +S   ++     EE   
Sbjct: 446 EFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKIYGIIKEEALK 505

Query: 775 LKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           LK D      + +    +E   ++L   E+ ++T++EKG+ KR +   +R   R G G+ 
Sbjct: 506 LKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVN 565

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFST 885
           AT+  + +    +  ++     D +++ + KG +  + V EI    +  +G     I + 
Sbjct: 566 ATNTVEDD---VVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIGNIINL 622

Query: 886 AKDERVVSVERIRESE 901
             DE+V ++ ++RE E
Sbjct: 623 DNDEKVSTIIKVREFE 638



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 9/197 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  T+ G   R  I   R    R  +GV   +  + D V  M I    D   
Sbjct: 530 LIKDEEVVVTLTEKGYVKRVAIDTYRS-QKRGGIGVNATNTVEDDVVKDMYIAKALDTLL 588

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++  +K             + I ++ N  + E   +  + +E + K + +  V+
Sbjct: 589 IFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLDNDEKVSTIIKVREFE-KNRNLFFVT 647

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  K++    F    ++GK  RA  ++  +E+   + +   +  D+I   +  G  I+
Sbjct: 648 RNGVVKKSELTLFSNIMKAGK--RAIRLNDDDEV-MFIGLTSGSGEDEIFAATRNGIAIK 704

Query: 865 VPVNEIRIASRATKGVV 881
               ++R    +  GV 
Sbjct: 705 FSEKDVRSMGTSAVGVR 721


>gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto
           BEST195]
          Length = 806

 Score =  625 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 302/887 (34%), Positives = 474/887 (53%), Gaps = 92/887 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSP 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE
Sbjct: 189 VIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ 
Sbjct: 249 TIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L
Sbjct: 309 ADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +                 
Sbjct: 369 QKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +L
Sbjct: 412 ---------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L ++K +    RR+ I E + +++      +  ED+ VTV+  GY+KR     
Sbjct: 463 LKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           +   N++++++ E I   +P  E + S    Y++F TK+G V++ +L+ +         +
Sbjct: 578 QHFSNLITIDRDETIVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI+L + D 
Sbjct: 635 ALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDF 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+                                                       E+ 
Sbjct: 694 VV-----------------------------------------------------SGEIL 700

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F      +++
Sbjct: 701 QQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFACGLEQRLM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             ++KG    +   E+R   R + G   F   +  +V +V R+   +
Sbjct: 760 AETEKGDRKELQAKELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
 gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score =  625 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 304/900 (33%), Positives = 468/900 (52%), Gaps = 91/900 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K + K
Sbjct: 5   EKFRDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKGFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG+ ++YDA+ RM+QDW +R LL+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   +  LL D+ K TV+F PN+D +  EP VL A YPN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSALSSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +L E++DG +  +D PD  +D LME I+GPDFPTG +I G  GIK AY TGRG I++RG 
Sbjct: 185 HLNEIIDGVILRMDKPDCSIDDLMEHIKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E   G ++QIV+TEIPY+VNKA +++KI E   ++++  IA++RDE+DR G R+VIE
Sbjct: 245 AEFEDLRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A  + +L+ LY+ + LQ  ++ NMVA++   P+   L  +L A++  R+EVV RR+
Sbjct: 305 LKKDADPEGVLHYLYKNSDLQIPYNFNMVAIHNRHPKLMGLRELLDAYIGHRKEVVTRRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA  R H++ GL  A++ LDEV+  IR S +   A+  L+ +             
Sbjct: 365 QFELQKAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL S
Sbjct: 412 -------------FEFTEPQAEAIVSLQLYRLTNTDITALRAEAEDLAKLIGELKSILES 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
             +L  +IK+EL  VK      RRTRI   + +++      +  ED++VTV+  GYVKR 
Sbjct: 459 EKKLFSVIKKELRDVKKRFADERRTRIEAEIEEIKINLEVLVASEDVIVTVTKEGYVKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G     M+D D +     ++T   +L F++ G      V +LP    
Sbjct: 519 SQRSFAASNGQDFG-----MKDSDRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + NI+ +++ E I   +P  + E+     Y++F TK+G V++ +L  +     S
Sbjct: 574 KDLGQHIANIIPIDRNESIVRAIPVKDFETEE---YLLFMTKNGMVKKTELKAYKAQRYS 630

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   DE+L V       +I L T  G  + F    + +   R + GV+GI+L 
Sbjct: 631 KPLVAVNVKGTDEVLDVYLTDGTKEIFLATHQGFGLWFHEEEVSIVGAR-AAGVKGINLK 689

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V    ++                                                 
Sbjct: 690 DGDFVAGAQLIEDQ---------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                KEQ ++ V+++G  K+    +F  ++R+ +G+      K N    +V    V   
Sbjct: 704 -----KEQSVVIVTQRGSIKKMKLSEFERTSRAKRGVVMLRELKSNPH-RIVGCVIVRSK 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            ++ + ++KG +  V V+ IR   R + G  I   ++  +   + R  E + VD++  TE
Sbjct: 758 HELYIETEKGHIEAVNVSSIRFNDRYSNGSFIIDESESGKAKCIWR-AEVKEVDDSHVTE 816


>gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 835

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 320/909 (35%), Positives = 492/909 (54%), Gaps = 115/909 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG + +IDNPD+  + L EII GPDFPTG  I+G +GI+ AY TG+G IV+RGV+
Sbjct: 193 LGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIVGNSGIREAYTTGKGGIVLRGVA 252

Query: 255 HIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+      S  R  I++TE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDR+G R
Sbjct: 253 TLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   IL  LY  T+LQ+ F   ++AL   +P + +L   L+ F+ FRE  +
Sbjct: 313 VVIELKRDTNPQEILQHLYHQTALQTTFGAILLALVEGQPRQLSLRQTLQEFLNFREHTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA +R +++ GL  A++ LDEV+ I+R + +  TA+  L ++         
Sbjct: 373 NRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCRQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSEVQ  AIL + L RLT L + +++ E +SL  +I     
Sbjct: 424 -----------------LDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE----------GLLDMEDEDC------- 532
           +L  R  LL  +K++L S+K +   PRRT+I+           G  + ED          
Sbjct: 467 LLEDRRELLKALKKDLRSLKRKYSDPRRTKILAINETPIKSEKGTTETEDNPKSKLQTPK 526

Query: 533 --IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E+ ++  +  GYV+R+  +       G K ++   + + DF+    +  T   +L
Sbjct: 527 SEQPPEEAILEFTQRGYVRRLSPT-------GKKPKAENGLHENDFIIQTELTDTEKDLL 579

Query: 591 FFSSLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             ++ G VY  KV  +P I     RG  LI +L+      +  ++       +     ++
Sbjct: 580 ILNTGGKVYPVKVGDIPAITGRSPRGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQML 639

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             TK G ++R  + +F  ++R G   +KL   DE+   +  T    ++L +  G+ +RF 
Sbjct: 640 LLTKQGRIKRLSMEEFANLSRRGITILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFA 699

Query: 710 ISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           ++  +    GR ++G++   L K  Q++  A V   D                       
Sbjct: 700 VNEEQLPIMGRAAMGLQAFRLLKNQQMVGCATVGKDDQ---------------------- 737

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +L V+++G+ KR  + + R +NR   GI+
Sbjct: 738 -------------------------------LLLVTQEGYAKRIPASNLRAANRGDLGIQ 766

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                  N+   L  +       ++ LVS+K  ++R+PV+ + I  R  KG  +    +D
Sbjct: 767 MLKF--HNKTDNLAGMVRATPGVEVALVSNKERVVRIPVDTVPILDRDAKGESVLQLNRD 824

Query: 889 ERVVSVERI 897
           E++++V  +
Sbjct: 825 EKIITVVEV 833



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 92/270 (34%), Gaps = 57/270 (21%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +  P+ E       + F T+ G VRR   +       +G     L   D I+  E    E
Sbjct: 522 LQTPKSEQPPEEAILEF-TQRGYVRRLSPTGKKPKAENG-----LHENDFIIQTELTDTE 575

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            D+L+    G+     +  I    GR+  G   I++                        
Sbjct: 576 KDLLILNTGGKVYPVKVGDIPAITGRSPRGTPLITM------------------------ 611

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                               +     +VEG ++     E   + Q +L  +++G  KR S
Sbjct: 612 -------------------LTSTAQGNVEGVVNRFVLPETPERSQMLLL-TKQGRIKRLS 651

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IR 871
             +F   +R G       + K+ +   L           +IL S  G L+R  VNE  + 
Sbjct: 652 MEEFANLSRRG-----ITILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFAVNEEQLP 706

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESE 901
           I  RA  G+  F   K++++V    + + +
Sbjct: 707 IMGRAAMGLQAFRLLKNQQMVGCATVGKDD 736


>gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
 gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
          Length = 838

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 325/928 (35%), Positives = 503/928 (54%), Gaps = 118/928 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +   +  +   +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAEQLNLLNTGQ---VVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSV
Sbjct: 58  HELGLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL    H  +  ++G++TV+F  N+D S QEP VL A+ P +L+NG 
Sbjct: 118 DNDPPAAMRYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VDG +A+ID+PD+  + L+E+I GPDFPTG  I+G  GIK 
Sbjct: 178 AGIAVGMATNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKE 237

Query: 240 AYATGRGSIVIRGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           AY TG+G I++RGV  +E          R  I+VTE+PYQVNKA  +EK+A+LV + R+ 
Sbjct: 238 AYNTGKGGIILRGVVSLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLH 297

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+DLRDESDRQG RVVIELKR A+ + ++ QLY+ T+LQ+ F   ++AL   +P + +L
Sbjct: 298 GISDLRDESDRQGMRVVIELKRDANPEEVIGQLYQQTALQTTFGAILLALVEGQPRQLSL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F+ FRE+ + RR  Y L KA +RA ++ GL  A++ +DEV+ I+R SP+  TA+
Sbjct: 358 RQMLQEFLRFREDTLNRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAK 417

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L Q+                          + L+E Q  AIL + L RLT L + +++
Sbjct: 418 MVLCQQ--------------------------LELTETQADAILAMPLRRLTSLEQQNLQ 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED----- 529
            E + L  +I     +L  R  LL  +K++L ++K +    RRT+++ G + ++      
Sbjct: 452 EEFHQLSDQITSLRRLLEDRRELLKSLKKDLRTLKRKYGDTRRTKLIPGQIAVKPDKVNN 511

Query: 530 --------------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                          +    E  ++  +  GYV+R+            K ++  +  D D
Sbjct: 512 QPSSPGEKEKSKISPEEQPPEPAILEFTQRGYVRRLAPGS-------KKAKAETITGDND 564

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIM 634
           F+    I +TH  +L  ++ G VY  KV  + PI +   RG  LI +L+      +  I+
Sbjct: 565 FLIQTEITNTHQDLLILNTSGKVYPVKVGDISPISARSPRGMPLITLLTNTAQGNVEGIL 624

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
                  + +   +V  TK G ++R  L +   +++ G   +KL   D++   +     +
Sbjct: 625 GRFILPETKDTHDMVIVTKQGRIKRLSLEELTNVSKRGITILKLKDDDQLCFAQLTNPNH 684

Query: 695 DILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +++L +  G+C+RF I+  +    GR ++G++   + K  Q+IS   +   +        
Sbjct: 685 NLILGSSGGRCLRFAINDDQLPVMGRAAMGLQSFRILKSQQIISCVTIEQEEN------- 737

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                         +L V+++G+ KR S
Sbjct: 738 ----------------------------------------------LLLVTQEGYAKRIS 751

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           S   R  NR   GI+       N+   LVA+   N + +++LV++K  +++  V  I I 
Sbjct: 752 SGSLRAGNRGDLGIQMLKF--HNKTDNLVAITRTNTSQKVVLVTNKERMVKTSVQSIPIL 809

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESE 901
            R  +G  IF   +DE + SV  + E+E
Sbjct: 810 DRDARGENIFPMTRDEVITSVVVVLETE 837


>gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1259

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/787 (35%), Positives = 425/787 (54%), Gaps = 90/787 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 609

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ +     +DN + D +A    + E ++GPDFPT  +I+G  GI +AY TGR
Sbjct: 610  IPPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHGLIVGSQGIHDAYTTGR 669

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
            GSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ R+  IA++ D+S D
Sbjct: 670  GSIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSSD 729

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +VA 
Sbjct: 730  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAH 789

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++     
Sbjct: 790  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE----- 844

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                  + + E+Q +AIL+++L RL  L R  I ++L  +  EI
Sbjct: 845  ---------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEI 883

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R  GI++ EL  + D+    RRTRIV    D+ DED I RED+VVT++ 
Sbjct: 884  ADLEDILAKPERQRGIVRDELTEIVDKHGDDRRTRIVAADGDVNDEDLIAREDVVVTITE 943

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 944  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAY 1003

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++ KL+D
Sbjct: 1004 ELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNGLVKKTKLTD 1060

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C+ E D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1061 FDSNRSGGIVAINLRDNDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPMGRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D ++S+ +V                                          
Sbjct: 1121 VQGMRFNTDDYLLSLNVVR----------------------------------------- 1139

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +  ++L  +  G+ KRT+  ++ +  R GKG+      +    G LV 
Sbjct: 1140 ------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDRR--RGKLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  +D  ++++ R  E    
Sbjct: 1186 ALIVDDDSELYAITSGGGVIRTDARQVRKAGRQTKGVRLMNLGEDNTLLAIARNAEENAD 1245

Query: 904  DEAESTE 910
            +  E  E
Sbjct: 1246 EVVEEAE 1252



 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECR--LQKAAHFLLDDLGKDTVDFRPNYDGS 160
             DPPAA RY      L +        +G       PN D  
Sbjct: 121 GNDPPAAMRYCLTEDALVRLPFGQSVRIGDIVPGASPNSDNE 162


>gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum]
          Length = 793

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 310/884 (35%), Positives = 492/884 (55%), Gaps = 92/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   ++  E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV  +K Y KCA
Sbjct: 1   MEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE MGKYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 61  RIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++DD+ ++TV FR N+DG+  EP  L ++ PN+L+NG  GIAVGMATN+  HNL
Sbjct: 121 TQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ D  +  +D+ D  +D L++ ++GPDFP G ++     +  AY TGRG ++++G   
Sbjct: 181 TEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG--- 237

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  + +  ++++  IPY VNKA +++ IA+L + + I DI D++DESDR G  +VI+++
Sbjct: 238 -EVDATEDRRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVR 296

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
                 ++LNQLY +T+L+S   +  + L G +P+   L  ++ +F+  R +V++RR+++
Sbjct: 297 DDDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQF 356

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L + ++R  VL G+  AV ++D VV I++ S + + A  +L                  
Sbjct: 357 RLERKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNE--------------- 401

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ Q +AILE+RL RL    +  +R+E+  L  EIK+  +I+ S  
Sbjct: 402 -----------FDLNDRQIKAILEMRLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSED 450

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R +   K+E+  ++ +    RR+RI   G+ +   ED I  E+ ++ +S+ G VKRV   
Sbjct: 451 RRIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQAD 510

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGGKG +   M+  D +  +    +H +V +F++ G V+K K + +P  S  + 
Sbjct: 511 EYRSQRRGGKGVNT-SMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSL 569

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G +    L L QGER+T IM  P ++      Y++  T+ G+V++           SG  
Sbjct: 570 GVSAAAFLKLAQGERVTEIMKAPPEKGY----YLILVTRDGSVKKTAADPVFDSKSSGLK 625

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + L+  DE++SV     + +I + +  G+   F  S IR   GR S+GVR + L +GD 
Sbjct: 626 IITLEDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDT 684

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +++  +V                                                     
Sbjct: 685 ILTAFVV----------------------------------------------------- 691

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             ++ IL++SEKG+GKRT+  +F I +R   G+     ++    G +    PV D D++I
Sbjct: 692 NSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTER--TGRVSHAIPVRDEDEVI 749

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           LVS     IR+  +EI   SR T GV +     D+RV++   I+
Sbjct: 750 LVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 793



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 84/262 (32%), Gaps = 55/262 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTK 701
            N   ++  +  G V+R +  ++    R GK +   + + D I S+  C   + +   T 
Sbjct: 490 PNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSMIHCFSHDTVYYFTN 549

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  +     I     R S+GV   +  K                              
Sbjct: 550 TGRVFKSKAYEI-PKKSRTSLGVSAAAFLK------------------------------ 578

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                               +G    E  +    K  +++ V+  G  K+T++     S 
Sbjct: 579 ------------------LAQGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDSK 620

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            SG  I         +   LV+V     +  I ++S KG       +EIR   R + GV 
Sbjct: 621 SSGLKIITL-----EDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRETGRTSMGVR 675

Query: 882 IFSTAKDERVVSVERIRESEIV 903
                + + +++   +   E +
Sbjct: 676 SMRLNEGDTILTAFVVNSDEDI 697


>gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 806

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 302/887 (34%), Positives = 474/887 (53%), Gaps = 92/887 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSP 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE
Sbjct: 189 VIDAVIKRIQMPSCSVDELMELIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ 
Sbjct: 249 TIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L
Sbjct: 309 ADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +                 
Sbjct: 369 QKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +L
Sbjct: 412 ---------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L ++K +    RR+ I E + +++      +  ED+ VTV+  GY+KR     
Sbjct: 463 LKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           +   N++++++ E I   +P  E + S    Y++F TK+G V++ +L+ +         +
Sbjct: 578 QHFSNLITIDRDETIVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI+L + D 
Sbjct: 635 ALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDF 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+                                                       E+ 
Sbjct: 694 VV-----------------------------------------------------SGEIL 700

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F      +++
Sbjct: 701 QQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFACGLEQRLM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             ++KG    +   E+R   R + G   F   +  +V +V R+   +
Sbjct: 760 AETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis]
 gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 806

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 302/887 (34%), Positives = 474/887 (53%), Gaps = 92/887 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSP 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE
Sbjct: 189 VIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ 
Sbjct: 249 TIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L
Sbjct: 309 ADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +                 
Sbjct: 369 QKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +L
Sbjct: 412 ---------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L ++K +    RR+ I E + +++      +  ED+ VTV+  GY+KR     
Sbjct: 463 LKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           +   N++++++ E I   +P  E + S    Y++F TK+G V++ +L+ +         +
Sbjct: 578 QHFSNLITIDRDETIVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI+L + D 
Sbjct: 635 ALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDF 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+                                                       E+ 
Sbjct: 694 VV-----------------------------------------------------SGEIL 700

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F      +++
Sbjct: 701 QQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFACGLEQRLM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             ++KG    +   E+R   R + G   F   +  +V +V R+   +
Sbjct: 760 AETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
 gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
          Length = 815

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 293/896 (32%), Positives = 479/896 (53%), Gaps = 90/896 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 5   ERFQDLPLEEVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDP AA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EPVVL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 125 RLAPIASELLHDIDKETVKFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGE++DG +  ++NPD  ++ LM +I+GPDFPTG ++ G  GIK AY TG+G +V+RG 
Sbjct: 185 HLGEIIDGAIMRMENPDCTVEDLMTVIKGPDFPTGGIVQGIDGIKKAYETGKGKMVVRGR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G R+QIV+ EIPY+VNKA +++KI EL  ++++  I+++RDE+DR G R+VIE
Sbjct: 245 TSIEEIRGGRKQIVIAEIPYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A AD +LN L++ T LQ  ++ NMVA++  +P+   L  +L A++  ++EVV +RT
Sbjct: 305 LKKDADADSVLNYLFKNTDLQVSYNFNMVAIHNRRPQLMGLRELLDAYIEHQKEVVTKRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KARDR H++ GL  A++ LDEV+  IR S + + A+  L+ +             
Sbjct: 365 EFDLKKARDRKHIVDGLMKALSILDEVIAAIRASKDKKDAKANLIAK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      + NE   L  +I+  L ILSS
Sbjct: 412 -------------FAFTEPQAEAIVTLQLYRLTNTDITTLENEAADLEKKIETYLAILSS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +L  +IK+EL  ++ +    RRT I   + +++      I  ED++VT++  GY+KR 
Sbjct: 459 EKKLFTVIKKELRDIRKKYADNRRTTIEAEIQELKINLEAMIPNEDVMVTITKDGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y A          + ++D D +     ++T  +VL F++ G      V  LP    
Sbjct: 519 SLRSYTASNG-----RDLAIKDSDRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-R 670
           +  G+ + N+++L + E I  ++P    E      +++F TK+G  ++ +L  +      
Sbjct: 574 KDLGQHVSNLVTLERDEGIIKVLPI---EDFNQPQFILFFTKNGMAKKTELQQYQAQRYS 630

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ L   DE+L V       ++ L ++LG  +RF  + I V   R + GV+G++L 
Sbjct: 631 KALVAINLKGDDEVLDVHLTDGSKEVFLASRLGYGLRFDEAEISVVGQR-AAGVKGMNLK 689

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+++S  I+   + D                                           
Sbjct: 690 EGDRLVSGKIIEDPEKDK------------------------------------------ 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +   +++G  K+    +F  ++R+ +G+      K +    +       D+
Sbjct: 708 ---------VFIATQRGAVKKMKVSEFDKTSRAKRGVIMLRELKAHPH-RIAGAVIAGDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + + ++++KG    + ++++R   R + G       ++  V  V +    E   E 
Sbjct: 758 ETVSVITEKGHQEDIRLHDLRDHDRYSNGSFAIDEEENGTVAEVWKQEPEEGAAEE 813


>gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 825

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 330/911 (36%), Positives = 507/911 (55%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   +  +  E +  +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M
Sbjct: 1   MPRQLELTGPEPKARVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 61  HELGLAPDRPFRKCARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTECRL       LL ++   TV+F  N+DGS +EP VL AR P +L+NG 
Sbjct: 121 DNDPPAAMRYTECRLAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VDG VA+IDNP++  + L+ II GPDFPTG  I+G  GI+ 
Sbjct: 181 AGIAVGMATNIPPHNLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGTEGIRE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           AY TGRGSI +RG++H E+    R +   I+VT +PYQVNKAA +EK+AELV   ++  I
Sbjct: 241 AYLTGRGSITMRGITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGI 300

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +DLRDES+R+G RVV+E+KR A  + IL  LYR T LQ+ F   ++ L G +P    L  
Sbjct: 301 SDLRDESNREGVRVVLEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+ F+ FR   + RR +Y L +A +RAH L G  +A+ANL  +V+++  + +   AR E
Sbjct: 361 LLEQFLEFRVATLTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAE 420

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L                          + +  LSE Q+  IL++ L RLT L R+ + +E
Sbjct: 421 L--------------------------EASYGLSERQSEEILQMPLRRLTQLDRERLASE 454

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVR 535
              L  ++ E    L SR +LLG++K+EL  +K +   PRRT I      +    +    
Sbjct: 455 HRELREKVIELQSQLDSRRKLLGLLKRELRDLKKKHADPRRTCIEARTAPLPTLAEITSD 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +++VV ++H GYV+R+P + +  + R    R+     D DFV + +   T   +L  +  
Sbjct: 515 DEVVVQLTHRGYVRRIPAAAFERRSRSR--RAVSRTEDNDFVVESYPTRTRNELLVITRS 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y  KV  +P   P++RG  L+ +LS+ QGE+I         E+   +L++V  T+ G
Sbjct: 573 GRAYSLKVSEIPETGPRSRGTPLVTLLSI-QGEQIAATFV---RENYPPDLFLVLLTREG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++  LS+   +   G + +KL   D+++ V   T  + I++ T  G+ +RF     ++
Sbjct: 629 RIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLATAHSQIVVGTSAGRLLRFVADEAQL 688

Query: 716 F-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+++G++ I L +G+ + +M +V + +                             
Sbjct: 689 PAMGRSALGLQAIKLRRGESLAAMTVVGNGED---------------------------- 720

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L VS  G GKR  + + R+  R+G G     + +
Sbjct: 721 -------------------------LLMVSRLGLGKRLKTGEIRLQERAGLGTPVGLLRE 755

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N   +L+AV  V    ++ + +D+  L++V + E+    R++ G  +      E++++V
Sbjct: 756 RN-GDSLLAVLAVGAEGEVAMATDQERLVQVDLGELAATDRSSPGKPLAVLNPAEQIIAV 814

Query: 895 ERI-RESEIVD 904
            R+  E E  D
Sbjct: 815 TRLSAEPEETD 825


>gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2]
 gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2]
          Length = 820

 Score =  623 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 305/887 (34%), Positives = 473/887 (53%), Gaps = 90/887 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G    K Y K
Sbjct: 5   EQFLPAYLEEMVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+++IYD + RMAQ W +  +L++G GN+GS D DP AA RYTE 
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  +L D+ K TV F+ N+D S +EPVVL +RYPN+LVNG  GI+ G AT IPTH
Sbjct: 125 RLSPIAMEMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +L EV+D  +AV++ P I+L+ +M  I+GPDFPTG +I+G  GIK+AY TG+G I IR  
Sbjct: 185 SLREVIDATIAVMEKPQIELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I+   G ++Q+V+TEIPYQV K+ ++  +  +  EK++  IA++RDES R G R+V+E
Sbjct: 245 TEIQSLRGGKQQLVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ IL  L + T LQ  ++ NMVA+    P +  L  IL+A++A + EVV  R 
Sbjct: 305 LKKEADAEGILAYLLKKTDLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTNRI 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L                
Sbjct: 365 KFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  +IL L+L RLT L    +  EL  +  +I +   IL S
Sbjct: 409 ----------QWMFGFSERQADSILTLQLYRLTNLEITTLEKELADIQKKITQYRSILDS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +L+ +I++ELL ++++    RR+ I   + +++      +  ED+++T+S  GYVKR 
Sbjct: 459 DRKLISLIRKELLEIREKYGIDRRSEIQGEVEEIKVNLEVMVAAEDVLLTLSKDGYVKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +    R G  RS   +++ D++T    V+T   +L F+  G  +   V ++P    
Sbjct: 519 SMLSF---TRSGGERSNSGVKEGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYKW 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G  ++N++SL + +RI +++P    E    +  +VF TK G V+R +L+++     S
Sbjct: 576 KEPGTPIVNVISLAKEDRIVSVIPIKNMEEIGKS--LVFVTKKGQVKRTELTEYATKRSS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A K+   DEILSV       DI+L T+ G  +RF    +     R S GV+GI LA+
Sbjct: 634 AVAACKVAGDDEILSVTLSDNSKDIMLITRAGMSIRFKEQEVNAMG-RVSAGVKGIQLAE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++++   V   + +                                            
Sbjct: 693 GDEIVAALWVEEDEGE-------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPV 847
                   +L ++E G+GKRT   D+    R GKGI   +  +   + +    +VA F  
Sbjct: 709 --------VLVLTESGYGKRTLLLDYPSQGRGGKGISTFEFKEGKRVRSNGTRIVAAFYC 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +  Q+ +++ +G  +     +  +  R   G ++    K + +V+V
Sbjct: 761 REAVQLFVITSEGQTMSFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 84/221 (38%), Gaps = 15/221 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                E+ +L  +K G   R  + +  R    R++ GV+     +GD +     V   D 
Sbjct: 498 VMVAAEDVLLTLSKDGYVKRTSMLSFTRSGGERSNSGVK-----EGDYITQFLDVNTLDV 552

Query: 747 ----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                   +   +                I ++ + +  +  +S    + ++   + ++ 
Sbjct: 553 LLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKEDRIVSVIPIKNMEEIGKSLVF 612

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V++KG  KRT   ++     + K   A    K+     +++V   +++  I+L++  G  
Sbjct: 613 VTKKGQVKRTELTEY-----ATKRSSAVAACKVAGDDEILSVTLSDNSKDIMLITRAGMS 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR    E+    R + GV     A+ + +V+   + E E  
Sbjct: 668 IRFKEQEVNAMGRVSAGVKGIQLAEGDEIVAALWVEEDEGE 708


>gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208]
 gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 807

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 301/888 (33%), Positives = 474/888 (53%), Gaps = 92/888 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSS 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I++PD  +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IRG + +E
Sbjct: 189 VIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVV+ELK+ 
Sbjct: 249 AVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  R+ + L
Sbjct: 309 ADAKGILNFLYKNTDLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++R H++ GL  A++ LDEV+ +IR S + + A++ L+ +                 
Sbjct: 369 QKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   L  +I+E   ILS   +L
Sbjct: 412 ---------FSFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L  +K      RR+ I E + +++      +  ED+ VTV+  GYVKR     
Sbjct: 463 LKVITSSLKKLKKTYADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           + + NI ++++ E I   +P  E   +    Y++F TK+G V+R +++ +         +
Sbjct: 578 QHVTNITTIDRDETIVKAIPVKEFNPAS---YLLFMTKNGMVKRTEMTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V        + + T LG  + F    + V   R + GV+GI+L  GD 
Sbjct: 635 ALNLKGDDELVDVHVTDGGCQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKDGDT 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S  I+                                                     
Sbjct: 694 VVSGQILH---------------------------------------------------- 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   ++ V+++G  KR +  +F  ++R+ +G+      K N    +V VF     D I 
Sbjct: 702 -ETDSLVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLRELKKNPH-RVVGVFACALADTIA 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             ++KG  I   V  +R   R + G       +   V  V RI  S++
Sbjct: 760 AETEKGERIETTVKSLRANDRYSNGSFFTDEDETGPVTDVWRIPASDV 807


>gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
 gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
          Length = 835

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 315/915 (34%), Positives = 490/915 (53%), Gaps = 124/915 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  +  ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID PD+  + L+E+I GPDFPTG  I+G TGI+ AY TG+G IV+RGV+
Sbjct: 193 LGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGETGIREAYITGKGGIVLRGVA 252

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+  G      R  I+VTE+PYQVNKA  +EK+AELV + R+  I+DLRDESDR+G R
Sbjct: 253 TVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQ+ F   ++A+   +P + +L  +L+ F+ FRE  +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFREHTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA  R + + GL  A++NLDEV+ I+R +P+  TA+  L  +         
Sbjct: 373 NRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCSQ--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  AIL + L RLT L + +++ E   L  +I     
Sbjct: 424 -----------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---------------------GLLDME 528
           +LS R  LL  +K++L S+K +   PRRT++                             
Sbjct: 467 LLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTEN 526

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                  E+ ++ ++H GY++R+        + G K +    + + DF+    I  TH  
Sbjct: 527 LSPLEPAEEAILEITHRGYLRRI--------QPGKKSKVENGLLEHDFIIQTNITDTHKE 578

Query: 589 VLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQ---GERITTIMPFPEDESSWN 644
           +L  ++ G +Y  KV  +P+      RG  LI +L+       E + + +  PE+ ++  
Sbjct: 579 LLVLTNGGKLYPVKVGDIPLTTGRSPRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQ 638

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              ++  TK G ++R  L +   + R G   +KL   DE+L  +       ++L +  G+
Sbjct: 639 ---LILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKAGQHLILASSGGR 695

Query: 705 CVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +RF  +  +    GR ++G++   L +   ++       A+                  
Sbjct: 696 LLRFSANDEQLPIMGRTAMGLQAFRLLRNQCMVGCVNAAQAE------------------ 737

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                              ++L V+E+G+ KR      + +NR 
Sbjct: 738 -----------------------------------YLLLVTEEGYAKRLPVNQIKSANRG 762

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G ++     +N+   L A+   N + ++ L++++  ++R+  + + I  R  KG  I 
Sbjct: 763 DLGTQSMKF--VNKTDNLAAMVGANTSSEVALLTNRERVVRISTDTVPILPRDGKGETIL 820

Query: 884 STAKDERVVSVERIR 898
              +DE+V++V  +R
Sbjct: 821 QLNRDEKVIAVVEVR 835


>gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 838

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 323/927 (34%), Positives = 499/927 (53%), Gaps = 118/927 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +   +  +   + S ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAEQLNLLNTGQ---VVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSV
Sbjct: 58  HELGLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL    H  +  ++G++TV+F  N+D S QEP VL A+ P +L+NG 
Sbjct: 118 DNDPPAAMRYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VDG +A+ID+PD+  + L+E+I GPDFPTG  I+G  GIK 
Sbjct: 178 AGIAVGMATNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKE 237

Query: 240 AYATGRGSIVIRGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           AY TG+G I++RGV  +E          R  I+VTE+PYQVNKA  +EK+A+LV + R+ 
Sbjct: 238 AYNTGKGGIILRGVVSLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLH 297

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+DLRDESDRQG RVVIELKR A+ + ++ QLY  T+LQ+ F   ++AL   +P + +L
Sbjct: 298 GISDLRDESDRQGMRVVIELKRDANPEEVIGQLYHQTALQTTFGAILLALVEGQPRQLSL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F+ FRE+ + RR  Y L KA +RA ++ GL  A+  +DEV+ I+R SP+  TA+
Sbjct: 358 RQMLQEFLRFREDTLNRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAK 417

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L Q+                          + L+E Q  AIL + L RLT L R +++
Sbjct: 418 MVLCQQ--------------------------LDLTETQADAILAMPLRRLTSLERQNLQ 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED----- 529
            E + L  +I     +L  R  LL  +K++L ++K +    RRT+++ G + ++      
Sbjct: 452 EEFDQLNEQITSLRRLLEDRRELLKSLKKDLRTIKRKYGDTRRTKLIPGQIAVKADKVNN 511

Query: 530 --------------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                         ++    E  ++  +H GYV+R+            K ++  +M D D
Sbjct: 512 QPSSPGEKEKSKISQEEQPPEPAILEFTHRGYVRRLAPGS-------KKAKAETIMGDND 564

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIM 634
           F+    I +TH  +L  ++ G VY  KV  + PI     RG  LI +L+      +  I+
Sbjct: 565 FLIQTEITNTHQDLLILNTSGKVYPAKVGDISPISPRSPRGIPLITLLTNTAQGNVEGIL 624

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
                  + +   +V  TK G ++R  L +   +++ G   +K+   D++   +     +
Sbjct: 625 GRFTLPETKDTHDMVIVTKQGRIKRISLEELTNVSKRGITILKVKDDDQLCFAQLTNPNH 684

Query: 695 DILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +++L +  G+C+RF I+  +    GR ++G++   + K  Q+I    +   +        
Sbjct: 685 NLILASSGGRCLRFAINDDQLPVMGRGAMGLQSFRILKSQQIIGCVAIGQEEN------- 737

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                         +L V+++G+ K+ S
Sbjct: 738 ----------------------------------------------LLLVTQEGYAKKIS 751

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           S   R  NR   G +       N+   LVA+   N + ++ LV++K  +I+  +  I I 
Sbjct: 752 SSSLRAGNRGDLGTQMLKF--HNKTDNLVAITRTNSSQEVALVTNKDRVIKTSIESIPIL 809

Query: 874 SRATKGVVIFSTAKDERVVSVERIRES 900
            R  +G  I    +DE + SV  + E+
Sbjct: 810 DRDARGENILPMTRDEIITSVVLVLET 836



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 93/286 (32%), Gaps = 61/286 (21%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N    + GE+  + +     E       ++  T  G VRR         ++  K    +
Sbjct: 509 VNNQPSSPGEKEKSKIS---QEEQPPEPAILEFTHRGYVRR-----LAPGSKKAKAETIM 560

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++  E      D+L+    G+     +  I   + R+  G+  I+L         
Sbjct: 561 GDNDFLIQTEITNTHQDLLILNTSGKVYPAKVGDISPISPRSPRGIPLITL--------- 611

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                                              +     +VEG +      E K    
Sbjct: 612 ----------------------------------LTNTAQGNVEGILGRFTLPETKDTHD 637

Query: 799 FILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            ++ V+++G  KR S  +   +S R         + K+ +   L      N N  +IL S
Sbjct: 638 MVI-VTKQGRIKRISLEELTNVSKRG------ITILKVKDDDQLCFAQLTNPNHNLILAS 690

Query: 858 DKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             G  +R  +N+  + +  R   G+  F   K ++++    I + E
Sbjct: 691 SGGRCLRFAINDDQLPVMGRGAMGLQSFRILKSQQIIGCVAIGQEE 736


>gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728]
 gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 309/884 (34%), Positives = 495/884 (55%), Gaps = 92/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   ++  E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV  +K Y KCA
Sbjct: 4   MEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE MGKYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL
Sbjct: 64  RIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 123

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  ++DD+ ++TV FR N+DG+  EP  L ++ PN+L+NG  GIAVGMATN+  HNL
Sbjct: 124 TQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNL 183

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ D  +  +D+ D  +D L++ ++GPDFP G ++     +  AY TGRG ++++G   
Sbjct: 184 TEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG--- 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E  + +  ++++  IPY VNKA +++ IA+L + + I DI D++DESDR G R+VI+++
Sbjct: 241 -EVDATEDRRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVR 299

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
                 ++LNQLY +T+L+S   +  + L G +P+   L  ++ +F+  R +V++RR+++
Sbjct: 300 DDDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQF 359

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L++ ++R  VL G+  AV ++D VV I++ S + + A  +L                  
Sbjct: 360 RLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNE--------------- 404

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L++ Q +AILE+RL RL    ++ +R+E+  +  EIK+  +I+ S  
Sbjct: 405 -----------FDLNDRQIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSED 453

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R +   K+E+  ++ +    RR+RI   G+ +   ED I  E+ ++ +S+ G VKRV   
Sbjct: 454 RRIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQAD 513

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGGKG +   M+  D +  +    +H +V +F++ G V+K K + +P  S  + 
Sbjct: 514 EYRSQRRGGKGVNT-SMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSL 572

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G +    L L QGER+T IM  P ++      Y++  T+ G+V++           SG  
Sbjct: 573 GVSAAAFLKLAQGERVTEIMKAPPEKGY----YLILVTRDGSVKKTAADPVFDSKSSGLK 628

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + L+  DE++SV     + ++ + +  G+   F  S IR   GR S+GVR + L +GD 
Sbjct: 629 IITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDT 687

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +++  +V                                                     
Sbjct: 688 ILTAFVV----------------------------------------------------- 694

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             ++ IL++SEKG+GKRT+  +F I +R   G+     ++    G +    PV D D++I
Sbjct: 695 NSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTER--TGRVSHAIPVRDEDEVI 752

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           LVS     IR+  +EI   SR T GV +     D+RV++   I+
Sbjct: 753 LVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 84/262 (32%), Gaps = 55/262 (20%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTK 701
            N   ++  +  G V+R +  ++    R GK +   + + D I S+  C   + +   T 
Sbjct: 493 PNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSMIHCFSHDTVYYFTN 552

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  +     I     R S+GV   +  K                              
Sbjct: 553 TGRVFKSKAYEI-PKKSRTSLGVSAAAFLK------------------------------ 581

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                               +G    E  +    K  +++ V+  G  K+T++     S 
Sbjct: 582 ------------------LAQGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDSK 623

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            SG  I         +   LV+V     +  + ++S KG       +EIR   R + GV 
Sbjct: 624 SSGLKIITL-----EDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVR 678

Query: 882 IFSTAKDERVVSVERIRESEIV 903
                + + +++   +   E +
Sbjct: 679 SMRLNEGDTILTAFVVNSDEDI 700


>gi|308069401|ref|YP_003871006.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
 gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
          Length = 820

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 305/880 (34%), Positives = 474/880 (53%), Gaps = 90/880 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAYRKSAKTVGD 71

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+++IYD + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A 
Sbjct: 72  VMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAM 131

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ K TV F+ N+D S +EPVVL +RYPN+LVNG  GI+ G AT IPTH+L EV+D
Sbjct: 132 EMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVID 191

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +AV++ P+I+L+ +M  I+GPDFPTG +I+G  GIK+AY TG+G I IR  + I+   
Sbjct: 192 ASIAVMEKPEIELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRSKTEIQSLR 251

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           G ++Q+V+TEIPYQ+ K+ ++  +  +  EK++  IA++RDES R G R+V+ELK+ A A
Sbjct: 252 GGKQQLVITEIPYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEADA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + IL  L + T LQ  ++ NMVA+    P +  L  IL+A++A + EVV  R +Y L KA
Sbjct: 312 EGILAYLLKKTDLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTHRIQYELEKA 371

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            DRAHVL GL  A+  LDEV+  I+ S N + A+  L                       
Sbjct: 372 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL----------------------- 408

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    SE Q  +IL L+L RLT L    +  EL  +  +I +   IL S  +L+ +
Sbjct: 409 ---QWMFGFSERQADSILTLQLYRLTNLEITTLEKELGDIQKKIAQYRSILESDRKLISL 465

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVKRVPLSVYRA 558
           I++ELL ++++    RR+ I   + +++    ++   ED+++T+S  GYVKR  +  +  
Sbjct: 466 IRKELLEIREKYGIDRRSDIQGEVEEIKVNLEVMVGAEDVLLTLSKDGYVKRTSMLSF-- 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R G  RS   +++ D+VT L  V+T   +L F+  G  +   V ++P    +  G  +
Sbjct: 524 -TRSGGERSSSGVKEGDYVTQLLDVNTLDILLVFTQRGQYFLLPVHQVPEYKWKEPGTPI 582

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N++ L++ +RI +++P    E    +  +VF TK G V+R +L ++     S   A K+
Sbjct: 583 VNVIPLSKEDRIVSVIPLKNIEEIGKS--LVFVTKKGQVKRTELKEYATKRSSAVAACKV 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+LSV       DI+L T+ G  +RF    +     R S GV+GI LA+GD++I+ 
Sbjct: 641 AGDDEVLSVTLSEGTRDIMLITRAGMSIRFKEQEVNAMG-RVSAGVKGIQLAEGDEIIAA 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V   + +                                                   
Sbjct: 700 LWVEEDEGE--------------------------------------------------- 708

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQII 854
            +L ++E G+GKRT   D+    R GKGI   +  +   + +    +VA F   +  Q+ 
Sbjct: 709 -VLVLTESGYGKRTLLLDYPTQGRGGKGITTFEFKEGKRVRSNGTRIVAAFYCREAVQLF 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ +G  +     +  +  R   G ++    K + +V+V
Sbjct: 768 AITAEGQTMSFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 15/221 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                E+ +L  +K G   R  + +  R    R+S GV+     +GD V  +  V   D 
Sbjct: 498 VMVGAEDVLLTLSKDGYVKRTSMLSFTRSGGERSSSGVK-----EGDYVTQLLDVNTLDI 552

Query: 747 ----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                   +   +                I ++   S  +  +S    + ++   + ++ 
Sbjct: 553 LLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVIPLSKEDRIVSVIPLKNIEEIGKSLVF 612

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V++KG  KRT   ++     + K   A    K+     +++V        I+L++  G  
Sbjct: 613 VTKKGQVKRTELKEY-----ATKRSSAVAACKVAGDDEVLSVTLSEGTRDIMLITRAGMS 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR    E+    R + GV     A+ + +++   + E E  
Sbjct: 668 IRFKEQEVNAMGRVSAGVKGIQLAEGDEIIAALWVEEDEGE 708


>gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478]
          Length = 1257

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 282/804 (35%), Positives = 431/804 (53%), Gaps = 96/804 (11%)

Query: 119  SVDGDPPAAERY------TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
             VD D  A          TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+P
Sbjct: 532  RVDTDDHAFLTNGFVSHNTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFP 591

Query: 173  NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTG 228
            N+L NG GGIAVGMATNIP HNL E+ D     +DN D D +    A+ME ++GPDFPT 
Sbjct: 592  NLLANGSGGIAVGMATNIPPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTA 651

Query: 229  AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             +I+G  GI +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE V
Sbjct: 652  GLIVGSQGIADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQV 711

Query: 289  REKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
            R+ ++  IA++ D+ S+R G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++   
Sbjct: 712  RDGKLAGIANIEDQGSERVGVRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG 771

Query: 348  KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
             P    L  +++ +V  + +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S
Sbjct: 772  VPRTLRLDQMIRYYVEHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRAS 831

Query: 408  PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
               + AR  L++                           + + E+Q +AIL+++L RL  
Sbjct: 832  ETVDIARAGLIE--------------------------LLDIDEIQAQAILDMQLRRLAA 865

Query: 468  LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
            L R  I ++L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV    D+
Sbjct: 866  LERQRIVDDLAKIEAEIADLEDILAKPERQRGIVRDELGEIVDKHGDDRRTRIVAADGDV 925

Query: 528  EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             DED I RED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH 
Sbjct: 926  SDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHD 985

Query: 588  SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             +LFF++ G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y
Sbjct: 986  WILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPY 1042

Query: 648  VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            +V ATK+G V+++KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +R
Sbjct: 1043 LVLATKNGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIR 1102

Query: 708  FPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            F  +   +   GR + GV+G+     D+++S+ +V                         
Sbjct: 1103 FSATDEALRPMGRATSGVQGMRFNADDRLLSLNVVREG---------------------- 1140

Query: 767  GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            ++L  +  G+ KRT+  ++ +  R GKG
Sbjct: 1141 -------------------------------TYLLVATSGGYAKRTAIEEYPVQGRGGKG 1169

Query: 827  IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
            +    V      G LV     +D+ ++  ++  G +IR    ++R A R TKGV + +  
Sbjct: 1170 VLT--VMYDRRRGRLVGALIADDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLG 1227

Query: 887  KDERVVSVERIRESEIVDEAESTE 910
            + + ++++ R  E       E+ +
Sbjct: 1228 EGDTLLAIARNAEESEEAIGETDD 1251



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/161 (47%), Positives = 98/161 (60%), Gaps = 3/161 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D   E+ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDNSAER-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDG 159
             DPPAA RY      L +        +       RPN D 
Sbjct: 120 GNDPPAAMRYCVTGDALVRLPFGQSMRIADVVPGARPNSDN 160


>gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
          Length = 807

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 300/888 (33%), Positives = 473/888 (53%), Gaps = 92/888 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSS 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I++PD  +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IRG + +E
Sbjct: 189 VIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVV+ELK+ 
Sbjct: 249 AVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  R+ + L
Sbjct: 309 ADAKGILNFLYKNTDLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++R H++ GL  A++ LDEV+ +IR S + + A++ L+ +                 
Sbjct: 369 QKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   L  +I+E   ILS   +L
Sbjct: 412 ---------FSFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L  +K      RR+ I E + +++      +  ED+ VTV+  GYVKR     
Sbjct: 463 LKVITSSLKKLKKTYADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           + + NI ++++ E I   +   E   +    Y++F TK+G V+R +++ +         +
Sbjct: 578 QHVTNITTIDRDETIVKAISVKEFNPAS---YLLFMTKNGMVKRTEMTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V        + + T LG  + F    + V   R + GV+GI+L  GD 
Sbjct: 635 ALNLKGDDELVDVHVTDGGCQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKDGDT 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S  I+                                                     
Sbjct: 694 VVSGQILH---------------------------------------------------- 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   ++ V+++G  KR +  +F  ++R+ +G+      K N    +V VF     D I 
Sbjct: 702 -ETDSLVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLRELKKNPH-RVVGVFACALADTIA 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             ++KG  I   V  +R   R + G       +   V  V RI  S++
Sbjct: 760 AETEKGERIETTVKSLRANDRYSNGSFFTDEDETGPVTDVWRIPASDV 807


>gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70]
 gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70]
          Length = 814

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 299/886 (33%), Positives = 476/886 (53%), Gaps = 89/886 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  +++ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLDLALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++YDA+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TVDF PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSAIASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GIK AY TG+G I+IRG 
Sbjct: 183 HLGEVIDAVIMRIDKPNCTVDELMTVLHGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI++TE+PY+VNKA +++KI EL  +K++  I+D+RDE+DR G R+VIE
Sbjct: 243 AVIEQAKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  ++ NMVA++   P+  +L  +L A++  R+EVV  R+
Sbjct: 303 LKKDADAEGILNYLYKNTDLQVPYNFNMVAIHKRHPKLLSLPELLDAYIEHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM +             
Sbjct: 363 QYELKKAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      ++ E   L   I+E   IL+ 
Sbjct: 410 -------------YKFTEAQAEAIVSLQLYRLTNTDITALKQEAEQLEKTIQELTAILND 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL ++K +    RRT I + + +++      I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLAVIKKELRAMKKQYADERRTVIEDEIEEIKINLEVMIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G     M++ D +     ++T   +L F+  G      V+ LP    
Sbjct: 517 SYRSYSASNGQDFG-----MKESDRLLSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N++ L++ + I   +P  + +   ++L ++F TK G V+R +L+ +     +
Sbjct: 572 KDVGQHISNLIPLDRNDEIIAAVPVKQFD---DSLSLIFVTKRGMVKRTELAQYKVQRYT 628

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +AM +   DE++ V     +  +LL T  G  + F  + I     R + GV+GI+L 
Sbjct: 629 RPLVAMNVKEDDEVIHVYVTDGQQSLLLVTNQGYGLWFDEAEISTVGVR-AAGVKGINLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+S                                                     
Sbjct: 688 EGDYVVSA---------------------------------------------------H 696

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
              K +  +++  +++G  K+    +F  ++R+ +G+      K N    + +V    D+
Sbjct: 697 PIGKEEHMYLVIATQRGAVKKMPLSEFEKTSRAKRGVVMLRELKTNPHRIVASVLTEGDD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           D + + ++ G    V    +R A R + G  I  + +   ++ + +
Sbjct: 757 DVLFIRTETGVTEMVSTASLRTADRYSNGSFIIDSDEAGAIMDIWK 802



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 23/222 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS--------MA 739
                E+ I+  TK G   R         +   S G +   + + D+++S        + 
Sbjct: 496 VMIPAEDVIVTVTKEGYVKRTS-----YRSYSASNG-QDFGMKESDRLLSQMEMNTTDVL 549

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++     +Y     Y       + +    +  I   +ND  +     ++    L      
Sbjct: 550 LLFTRQGNYLYCPVYELPDIRWKDVGQHISNLIPLDRNDEIIAAVPVKQFDDSLS----- 604

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ V+++G  KRT    +++  R  + + A +V + +E   ++ V+  +    ++LV+++
Sbjct: 605 LIFVTKRGMVKRTELAQYKVQ-RYTRPLVAMNVKEDDE---VIHVYVTDGQQSLLLVTNQ 660

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           G  +     EI        GV   +  + + VVS   I + E
Sbjct: 661 GYGLWFDEAEISTVGVRAAGVKGINLKEGDYVVSAHPIGKEE 702


>gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
 gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
          Length = 796

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 332/893 (37%), Positives = 510/893 (57%), Gaps = 103/893 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S++I D+M++SYL+Y+++VI  RA+PD+RDGLKPVHRRIL+   ++G+  +K + K
Sbjct: 3   EKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPHKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+A++YDA+ RMAQ ++ R  LI+G GNFGS+DGD PAA RYTE 
Sbjct: 63  SARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A  ++ D+ +DTVDF  N+DGS QEP +L  + PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  V ++ +P+  L+ +M+ I GPDFPTGA I+G +GIK AY TG G I +R  
Sbjct: 183 NLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLRAR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI++ EIPY +NK  +LE IAEL+ + +I +++DLRDESD++G R+V+E
Sbjct: 243 TQIE-KKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRIVVE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK GA  D+ILNQLY++TSLQ+ + +NM+AL+G +P    LI ILK F+ FR +V+ RRT
Sbjct: 302 LKSGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KY LNKA++R H+L GL  A+  LD V+ IIR S + + AR++L ++             
Sbjct: 362 KYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                        + ++E Q  AIL +RL +L G+  + +  E   L  +IK    IL++
Sbjct: 409 -------------LVITEKQAEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
           ++ L  ++K+ELL +K++    R+T I+E      +E  D I +E + +T S+   +KR 
Sbjct: 456 KNELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S Y    R GK          D++ D    +T  ++LFF++ G VY   V ++P    
Sbjct: 516 TSSEY---ARAGK---------NDYIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHG 563

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            + G  + + L +   ++I  ++   E+       Y+  ATK G V++    ++      
Sbjct: 564 LSTGDNIKDFLKIPLSKKIVKVICLNEE---TKEKYITIATKQGMVKKTIGGEYQTTYSR 620

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A+KL+  DE++ VE      +ILL TK  + +RF         GRN++G  GI LAK
Sbjct: 621 -IKAIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRF-EEDSVSDTGRNTIGSIGIKLAK 678

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+S  +V +  +                                             
Sbjct: 679 GDEVVSFNLVNNNTS--------------------------------------------- 693

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++++S+ G GKR+   ++   NR+GKG++    S    I  +  V   N +D
Sbjct: 694 --------VVSISKTGRGKRSPIEEYNPQNRNGKGLKTCGSS----IYKMAGVICANPDD 741

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            I++ +    L  V VN++   SR      + S   D+++  VE++  +   D
Sbjct: 742 YILITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKLPFAPEED 794


>gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
 gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
          Length = 819

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 301/899 (33%), Positives = 479/899 (53%), Gaps = 90/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 5   EQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE 
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP H
Sbjct: 125 RLSSIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D C+AV+  P+I+L  +M  I+GPDFPT  +I+G  GI +AY TG+G + +R  
Sbjct: 185 NLREVIDACIAVMQKPEIELAEIMTFIKGPDFPTSGIIMGGEGILDAYRTGKGRVYLRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+E
Sbjct: 245 TDIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ IL  L + T LQ  ++ NMVA+    P++  L  +L A++  + EVV  RT
Sbjct: 305 LKKDADANGILAYLLKKTDLQITYNFNMVAIVNKTPQQLGLKAMLTAYIEHQREVVTNRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L                
Sbjct: 365 QFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  +IL L+L RLT L    ++ EL+ L  +I+    IL S
Sbjct: 409 ----------QWMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
             +L+ +I++ELL ++++    RR+ I E + +++      +  ED++VT+S+ GY+KR 
Sbjct: 459 DKKLIAVIRKELLEIREKYGIERRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +    R G       ++D D++T LF V+T  ++L F+S G  +   V ++P    
Sbjct: 519 SMLSF---TRSGGELGSSGVKDGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQIPEYKW 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G A++N++ + + + I +++P    E       +VF ++ G V+R +L D+      
Sbjct: 576 KDAGTAIVNVIQVPKEDNIVSVIPVSNFED--PGKSLVFVSRKGQVKRTELKDYATKRAG 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A K+ + D I+ V       DI+L +K G  +RF    +     R S GVRGI L  
Sbjct: 634 AVAAAKVAADDSIIQVVMSDGHKDIVLISKEGMSIRFNEQEVNAMG-RVSGGVRGIQLRD 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V++   V + + +                                            
Sbjct: 693 GDEVVAALWVENDEGE-------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPV 847
                   ILT+++ G+GKR+   D++  +R GKG+   +  +   +     A+   F  
Sbjct: 709 --------ILTITDLGYGKRSLLLDYQAQSRGGKGMATFEFKEGKRVKPNGSAIAGAFYC 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +  QI+  S+ G    +   ++ IA R + G ++    K  ++V +  +  +E   E+
Sbjct: 761 REPLQIMAYSEDGQAYPIHTEQVPIAERKSIGKLLADVGKKGQIVDLVNLPITETGKES 819


>gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
 gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
          Length = 789

 Score =  620 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 309/879 (35%), Positives = 479/879 (54%), Gaps = 94/879 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++NSYL YA++VI+ RAIPD+RDGLKPV RRI++ M ++ +  +K Y K ARI G
Sbjct: 4   PIEEEIKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVG 63

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E MGKYHPHG++AIYDALARM+QD+SLR  L++GQGNFGS+DGD PAA RYTE RL + A
Sbjct: 64  ETMGKYHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIA 123

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++ D+ K+TV F PN+DGS  EPV   ++ P +L+NG  GIAVGMATN+  HNL EV 
Sbjct: 124 EEMIRDIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVC 183

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D     ID+ D  L  L++ I+GPDFP G +I     + + Y TG G ++ RG    E  
Sbjct: 184 DAIKYKIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKDMIDIYKTGHGKVICRGSIEAED- 242

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
               ++I++  +PY +NKA  ++ +A LV   +I +I+D++DESDR G R+VI++K    
Sbjct: 243 ----KRIIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHDR 298

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            D+++NQLY  T L++  SV  + L    P    L  ++K F+ FR +V+ +R++Y L K
Sbjct: 299 IDLVVNQLYEKTQLETSISVTNLVLLDNVPVVMNLEDLIKNFIGFRLDVIKKRSEYDLKK 358

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +R H+L GL IA+ N+D V++IIR S +  +AR  L++                    
Sbjct: 359 LNERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKE------------------- 399

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                  + L+E Q  AIL++RL RLT L    ++ E++ +  +I+   D++++ +    
Sbjct: 400 -------LSLTEAQANAILDMRLQRLTALEISKLKEEIDEINKKIEYLSDVVNNENTRKN 452

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           ++K EL  +K +    RRT ++EG +   ++ED I  E+ V+ +S  G +KRV L  Y++
Sbjct: 453 VLKAELDEIKKQYGDRRRTEVIEGEISRRDEEDLIPNEESVIILSEKGLLKRVSLDEYKS 512

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGG+G      RD D V  +     H ++ FF++ G V KEK +R+     +A G + 
Sbjct: 513 QRRGGRGIITN-TRDNDSVKSVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRDRKALGVSG 571

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              L LN  E I  I+  PE+        ++  TK+G +++  +S+ + + +SG   + L
Sbjct: 572 NKFLKLNDNEIIRQIIKSPENLEDL----LIIVTKNGFIKKTNISEILDMRKSGIKIINL 627

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            + DE++SV   +  + I +    G+   F +S       R+S GV+ + L  G  VIS 
Sbjct: 628 ANNDEVVSVSEISGSSKIFVAASNGKAAVF-LSDEVPLTSRSSRGVKSMKL-NGSYVISA 685

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V   D                                                     
Sbjct: 686 FPVKDDD----------------------------------------------------- 692

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            IL+++E G GKRT + +F   +R   G+      +  + G LV   PV D+D+II+V+ 
Sbjct: 693 TILSITENGLGKRTRATEFPEHHRGSSGVYLFK--ENEKTGKLVMALPVKDDDEIIIVTK 750

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               IR+  ++I I SR   GV +    +++ + +   +
Sbjct: 751 NDQTIRIKSSDISILSRFASGVRLVGLTENDSISTACVV 789


>gi|145221415|ref|YP_001132093.1| DNA gyrase, A subunit [Mycobacterium gilvum PYR-GCK]
 gi|315441703|ref|YP_004074582.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
 gi|145213901|gb|ABP43305.1| DNA gyrase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260006|gb|ADT96747.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
          Length = 1261

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/787 (34%), Positives = 426/787 (54%), Gaps = 91/787 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 551  NTEARLTPLAMEMLREIDEETVDFVPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 610

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            +P HNL E+ +     +DN + D +A    + E ++GPDFPT  +I+G  GI + Y TGR
Sbjct: 611  MPPHNLRELAEAVYWCLDNHEADEEATLDAVCERVKGPDFPTYGLIVGSQGIDDTYKTGR 670

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
            GSI +RGV  IE+ +  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+S D
Sbjct: 671  GSIRMRGVVEIEEDARGRTSLVITELPYQVNHDNFITSIAEQVRDGKLTGISNIEDQSSD 730

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  
Sbjct: 731  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRHYVNH 790

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   E AR  L++     
Sbjct: 791  QLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIE----- 845

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                  + + E+Q +AIL+++L RL  L R  I ++L  +  EI
Sbjct: 846  ---------------------LLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEI 884

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RE++VVT++ 
Sbjct: 885  ADLEDILAKPERQRAIVHDELKEIVDKYGDDRRTRIIPADGDVADEDLIAREEVVVTITE 944

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 945  TGYAKRTKSDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAY 1004

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++++L D
Sbjct: 1005 DLPEASRTARGQHVANLLAFQPEERIAQVIQLKTYE---DAPYLVLATRNGLVKKSRLVD 1061

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1062 FDSNRSGGIVAVNLRDGDELVGAVLCSADDDLLLVSAKGQSIRFSATDEALRPMGRATSG 1121

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+   + DQ++S+ +V                                          
Sbjct: 1122 VQGMRFNEEDQLLSLNVVREG--------------------------------------- 1142

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++L  +  G+ KRT+  ++    R GKGI      +    G LV 
Sbjct: 1143 --------------TYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRR--RGTLVG 1186

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EI 902
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+ + 
Sbjct: 1187 ALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDS 1246

Query: 903  VDEAEST 909
             DE E+ 
Sbjct: 1247 TDEVETD 1253



 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 74/161 (45%), Positives = 97/161 (60%), Gaps = 2/161 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDG 159
             DPPAA RY      + +        +       RPN D 
Sbjct: 121 GNDPPAAMRYCVTGDAMVRLPFGQSVRIADIVKGARPNSDN 161


>gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
 gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
          Length = 836

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 319/914 (34%), Positives = 489/914 (53%), Gaps = 122/914 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              ++  +  ++  +TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID PD+    L EII GPDFPTG  I+G +GI+ AY +G+GSIV+RGV+
Sbjct: 193 LGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIVGDSGIREAYTSGKGSIVLRGVA 252

Query: 255 HIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E+      S  R  I++TE+PYQVNKA  +EK+A+LV   R+  I+DLRDESDR+G R
Sbjct: 253 KTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQS F   ++AL   +P + +L  +L+ F+ FRE+ +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQPRQLSLRQMLQEFLKFREQTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA  R H++ GL  A++ LD+++ I+R + +  TA+  L  R         
Sbjct: 373 NRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  AIL + L RLT L + +++ E   L  +I     
Sbjct: 424 -----------------LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQI 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT-------------------RIVEGLLDMEDE 530
           +LS R  LL  +K++L S+K + + PRRT                   +I    +D  + 
Sbjct: 467 LLSDRKELLKTLKKDLRSLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNS 526

Query: 531 DC-IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
                 E++++  SH GYV+R+       Q  G K ++   + D DF+    + +T   +
Sbjct: 527 PDAEPPEEVILDFSHRGYVRRL-------QPSGKKSKAENGLPDHDFIIQSDLTATDKEL 579

Query: 590 LFFSSLGFVYKEKVWRL-PIGSPQARGKALINILS---LNQGERITTIMPFPEDESSWNN 645
           L  +S G VY   V  + P      RG  LI +LS       E + + +  PE+      
Sbjct: 580 LVITSSGKVYPVNVGDIRPTTGRSPRGTPLITMLSSTAQGAQEAVVSRLILPEN---LET 636

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +V  TK G ++R  L +   + R G   +KL   DE+L  +  T + +++L +  G+ 
Sbjct: 637 RQMVLLTKEGRIKRLTLGELTNLTRRGITILKLKEDDELLFTQLTTPKENLILASSGGRL 696

Query: 706 VRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           ++F     +    GR ++G++ + L K  Q++        D                   
Sbjct: 697 LKFAADDQQLPVMGRTAMGLQALRLLKHQQMVGCVTAAGEDN------------------ 738

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              +L V+E+G+ KR    + + ++R  
Sbjct: 739 -----------------------------------LLLVTEEGYAKRLPVSNLKRADRG- 762

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             I    +   ++   L A+     + ++ LV++K  ++R+PV+ + I +R  KG  I  
Sbjct: 763 -NIGTQSLKFASKTDNLAAMVQAIASAEVALVTNKDRVVRIPVDTVPILARDGKGESILD 821

Query: 885 TAKDERVVSVERIR 898
             +DER++SV  ++
Sbjct: 822 LNRDERIISVMEVQ 835


>gi|254820902|ref|ZP_05225903.1| DNA gyrase, A subunit [Mycobacterium intracellulare ATCC 13950]
          Length = 1258

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 271/780 (34%), Positives = 421/780 (53%), Gaps = 90/780 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 609

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ +     +DN + D +A    + E ++GPDFPT  +I+G  GI +AY TGR
Sbjct: 610  IPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQGIHDAYTTGR 669

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
            GSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+S D
Sbjct: 670  GSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 729

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +VA 
Sbjct: 730  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAH 789

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++     
Sbjct: 790  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE----- 844

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                  + + E+Q +AIL+++L RL  L R  I ++L  +  EI
Sbjct: 845  ---------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEI 883

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RED+VVT++ 
Sbjct: 884  ADLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAREDVVVTITE 943

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 944  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAY 1003

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++ KL+D
Sbjct: 1004 ELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNGLVKKTKLTD 1060

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C+ + D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1061 FDSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEALRPMGRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D ++S+ +V                                          
Sbjct: 1121 VQGMRFNADDYLLSLNVVR----------------------------------------- 1139

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +  ++L  +  G+ KRT+  ++ +  R GKG+    V      G LV 
Sbjct: 1140 ------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--VMYDRRRGRLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  ++  ++++ R  E+   
Sbjct: 1186 ALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLAIARNAEANAD 1245



 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/161 (46%), Positives = 98/161 (60%), Gaps = 2/161 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDG 159
             DPPAA RY      L +        +G      +PN D 
Sbjct: 121 GNDPPAAMRYCVTADALVRLPFGQSVRIGDVVPGAKPNTDN 161


>gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
 gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
          Length = 835

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 316/915 (34%), Positives = 489/915 (53%), Gaps = 124/915 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              +H  +  ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID PD+  + L+E+I GPDFPTG  I+G  GI+ AY TG+GSIV+RGV+
Sbjct: 193 LGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGEAGIREAYITGKGSIVLRGVA 252

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+  G      R  I+VTE+PYQVNKA  +EK+AELV + R+  I+DLRDESDR+G R
Sbjct: 253 TVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDREGMR 312

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR  +   +L  LY  T+LQ+ F   ++A+   +P + +L  +L+ F+ FRE  +
Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFRENTL 372

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  Y L KA  R + + GL  A++ LDEV+ I+R +P+  TA+  L  R         
Sbjct: 373 NRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCSR--------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LSE Q  AIL + L RLT L + +++ E   L  +I     
Sbjct: 424 -----------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDR 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---------------------GLLDME 528
           +LS R  LL  +K++L S+K +   PRRT++                             
Sbjct: 467 LLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKQNSSAKTDEDTEN 526

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                  E+ ++ ++H GY++R+        + G K +    + + DF+    I  TH  
Sbjct: 527 LSPLEPAEEAILEITHRGYLRRI--------QPGKKSKVENGLLEHDFIIQTNITDTHKE 578

Query: 589 VLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILS---LNQGERITTIMPFPEDESSWN 644
           +L  ++ G +Y  KV  + P      RG  LI +L+       E + + +  PE+ ++  
Sbjct: 579 LLILTNGGKLYPVKVGDIPPTTGRSPRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQ 638

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              ++  TK G ++R  L +   + R G   +KL   DE+L  +       ++L +  G+
Sbjct: 639 ---LILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKPGQQLILASSGGR 695

Query: 705 CVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +RF  +  +    GR ++G++   L +  +++       A+                  
Sbjct: 696 LLRFSTNDEQLPIMGRTAMGLQAFRLLRNQRMVGCVNAAQAE------------------ 737

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                               +L V+E+G+ KR      + +NR 
Sbjct: 738 -----------------------------------HLLLVTEEGYAKRLPVNQIKSANRG 762

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G ++     +N+   L A+   N + ++ L++++  ++R+P + + I  R  KG  I 
Sbjct: 763 DLGTQSMKF--VNKTDNLAAMVGANTSGEMALLTNRERVVRIPTDTVPILPRDGKGESIL 820

Query: 884 STAKDERVVSVERIR 898
              +DE+V++V  +R
Sbjct: 821 QLNRDEKVIAVVEVR 835


>gi|120401035|ref|YP_950864.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
 gi|119953853|gb|ABM10858.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 1262

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 271/787 (34%), Positives = 425/787 (54%), Gaps = 90/787 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 551  NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 610

Query: 190  IPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            +P HNL E+ +     ++N     +  L+A+ E ++GPDFPT  +I+G  GI + Y TGR
Sbjct: 611  MPPHNLRELAEAVYWCLENYEADEEATLEAVCERVKGPDFPTHGLIVGSQGISDTYTTGR 670

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
            GSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+S D
Sbjct: 671  GSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSD 730

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  
Sbjct: 731  RVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVNH 790

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   E AR  L++     
Sbjct: 791  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIE----- 845

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                  + + E+Q +AIL+++L RL  L R  I ++L  +  EI
Sbjct: 846  ---------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEI 884

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RE++VVT++ 
Sbjct: 885  ADLEDILAKPERQRAIVHDELKELVDKYGDDRRTRIIPADGDVADEDLIAREEVVVTITE 944

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 945  TGYAKRTKSDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAY 1004

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++++L D
Sbjct: 1005 DLPEASRTARGQHVANLLAFQPEERIAQVIQLKSYE---DAPYLVLATRNGLVKKSRLVD 1061

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1062 FDSNRSGGIVAVNLRDGDELVGAVLCSAEDDLLLVSAKGQSIRFSATDEALRPMGRATSG 1121

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+   + DQ++S+ +V                                          
Sbjct: 1122 VQGMRFNEEDQLLSLNVVRE---------------------------------------- 1141

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRT+  ++    R GKGI      +    G LV 
Sbjct: 1142 -------------DTYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRR--RGTLVG 1186

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+   
Sbjct: 1187 ALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDS 1246

Query: 904  DEAESTE 910
             +  +T+
Sbjct: 1247 TDEVNTD 1253



 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             DPPAA RY      + +        +G      RPN D  
Sbjct: 121 GNDPPAAMRYCLTGDSMVRLPFGQSVRIGDVVSGARPNSDNE 162


>gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
 gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
          Length = 856

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 328/831 (39%), Positives = 480/831 (57%), Gaps = 26/831 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  I  EM+ SY+ YA++VI GRA+PD RDGLKPVHRRIL+ M Q G+     + K 
Sbjct: 18  EVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARSAHRKS 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + I GE MG YHPHG++AIY+ALARMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 78  SSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMRYTEAR 137

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LLD++  DTV+F  NYD    EP VL A +PN+LVNG  GIAVGM+TNIP HN
Sbjct: 138 MSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTNIPPHN 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D  + +I +P+  ++ LM  ++GPDFPTGA I+G+  I  AY TGRG + +R   
Sbjct: 198 LGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIVGQNAIYKAYKTGRGRVRVRAEF 257

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            ++       +IV+TE+P+Q NKA ++E+IA+ V    I  I DLRDESDR G RVV+EL
Sbjct: 258 DVQDD-----RIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGIRVVVEL 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+ D++ NQL  +  L+S F V  +AL   +P+  TL   L  ++  R  VV RR++
Sbjct: 313 KRGANPDIVKNQLLEH-HLESTFGVINLALVDGQPQVLTLKETLHEYLEHRRTVVRRRSQ 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L++ RDRAH+L G   A+  +D+VV IIR S + + A+  L       SD +      
Sbjct: 372 YELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESDERG----- 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                   S  T   SE Q   I+ ++L  LT L  D+I +E  S+   I+    IL++ 
Sbjct: 427 -------ESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNP 479

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L  +++ EL +++D+    RRTRI+E    +  ED I +ED+VV V+   Y+KR+ L 
Sbjct: 480 DELDAVVEDELATIRDKYADERRTRIIEDDGTVTHEDLIAQEDVVVVVTEDDYIKRMSLE 539

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +R+Q RGGKG  G  ++D D V+ +++ +TH  +L+F+S G VY+ K +++P  S  AR
Sbjct: 540 DFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPEMSRTAR 599

Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           GK+ +N+L L+ GE+IT ++   E D       Y    T+ G ++R  ++ F  I  +G 
Sbjct: 600 GKSAVNLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGYIKRTSVNSFQNIRSTGI 659

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L + D+++ VE      DI+L T+ G  +RF    +R    R++ GV GI L   D
Sbjct: 660 IAISLGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSVG-RSARGVHGIKLEDTD 718

Query: 734 QVISMAIVLHADADYD---ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            V ++A V     D+        Y K     R        +       +   G++ E   
Sbjct: 719 AVAALAAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGHVCEVET 778

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +  +   +  +S KG   RT   D     R+  G+   D+   + + ++
Sbjct: 779 VGISDE---LFMMSRKGQILRTPVDDISTVGRNTMGVIVMDLEDTDTVASV 826


>gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 823

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 332/895 (37%), Positives = 510/895 (56%), Gaps = 93/895 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +    + DE+  SYL+Y+++VI+GRAIPD+RDGLKPV RRI++ M ++G+  NK +
Sbjct: 17  EQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPF 76

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQ W +R  L+EGQGNFGS+D DPPAA RYT
Sbjct: 77  KKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYT 136

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +++D+ K TV    N+DGS QEP VL A+ PN+L+NG  GIAVGMATNIP
Sbjct: 137 EARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIP 196

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL +VVD  +A I N DI ++ L++II+GPDFPTG +I+G++GI+  Y TG+G   IR
Sbjct: 197 THNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMYITGKGGFTIR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + I+     ++ I++TEIPY ++KA ++++IA+ ++E+ I  + DLRDESD+ G RVV
Sbjct: 257 GKAEIKHEKK-KKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVV 314

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVV 370
           IE       +VILN LY+ T+LQ+ F+ N + ++G  +P    L  +++A+V  R EVV 
Sbjct: 315 IEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEVVR 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y   +   RAH++ GL  A   +D VV IIR S +   A  +L+            
Sbjct: 375 KRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVD----------- 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           + +SE Q +A+L++RL RLT L   +++ E   L + +++  ++
Sbjct: 424 ---------------ILQMSEEQAKAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKEL 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L +  ++  +I +EL  +K +   PR+T I    E     + +D I  +D+V+T++  G+
Sbjct: 469 LMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGF 528

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K + +  +R QRR GKG  G  + ++D ++ +     H+  LFF+SLG VY+ +   + 
Sbjct: 529 LKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIE 588

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +   +GK +   + L  GER+  ++   +         + F TK G V+R  L DF  
Sbjct: 589 ESNRGTKGKPINKYIKLENGERVLAMVDITDYVGE-----LFFVTKKGVVKRTSLEDFKN 643

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I   G  A+     DE++SV     E N +L++TKLG  +RF I  +R    RN+ GVRG
Sbjct: 644 ITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTMG-RNAAGVRG 702

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+VIS  ++ +                                           
Sbjct: 703 IRLREGDEVISSTVLEN------------------------------------------- 719

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       +ILT++E G+GK T   D+R  +R G GI+  ++ +I + G +V V  
Sbjct: 720 ---------DNGYILTITENGYGKLTEVSDYRKQSRDGLGIK--NIGEIEKTGPIVGVAY 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VN +++I+L +  G  I+  V++I   SR  +GV + + A  + V     I   E
Sbjct: 769 VNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDIVADFAVIGGEE 823


>gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD]
          Length = 877

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 320/844 (37%), Positives = 503/844 (59%), Gaps = 38/844 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I    I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  + 
Sbjct: 67  ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR  LI+G GNFGS+DGD  AA R
Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G  GIAVGMAT 
Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  NPDI +  L + +  PDFPTGA ILG +GI+ AY TGRG+ V
Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  + +I+V EIPY+V K  ++EK+ +LVR+K+I  + D+RDE++R+G R
Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV ++K+G S ++ILNQLY+ T LQ  +++NM+AL    P+   L  IL  ++  +EEVV
Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  ++ L KA++R ++L+G+ IAV N+DEV++IIR S +   A+  L QR         
Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLT L  + +  E+  L  EI+    
Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           I++S  +L+ +I      + +     RRT IV G    + DED I  + +V+T++   Y+
Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR Q RGG G S      +D + ++ + STH+ +L  +S   +++ +  ++P 
Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN++ + + E I +++   E+    +NLY+V  +K G +++  LS + +I
Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIVSLLVTQENYED-DNLYLVTVSKLGIIKKTSLSLYKRI 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +++G IA+ L   DE+L+    T+E++I++    G+ VRF     R  + R S+GV+GI+
Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758

Query: 729 LAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L + + V+  +             E      H+   R+   G    IT     +     I
Sbjct: 759 LGENEVVVGASSTDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKTEKAGNLAFI 818

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  +  E       IL ++++G   RTS       +R+ KG++   +   + I ++  + 
Sbjct: 819 SCVKGDE------EILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLE 872

Query: 846 PVND 849
            + +
Sbjct: 873 KIYE 876



 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 105/237 (44%), Gaps = 14/237 (5%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I + +++ DE++ +   ++ +     T LGQ  RF ++  +  A  +    R  SLA   
Sbjct: 447 IKIAVENIDEVIKIIRASKSDAEA-QTTLGQ--RFDLNEAQTKAIVDMRLGRLTSLAI-- 501

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERC 790
           + +   I    +           H      +++   + I S  +D     V G+I +   
Sbjct: 502 EKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVD 561

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  +++ +LT+++  + KR +  ++R+ NR G G       K +    L  +   + +
Sbjct: 562 EDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTATTYKDD---NLKNILVASTH 618

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
             +++++ K  + R+  ++I   S+  KGV   +     KDE +VS+   +E+   D
Sbjct: 619 SDLLILTSKARIFRLRTHQIPDLSKQAKGVPFINLIPIEKDEDIVSLLVTQENYEDD 675


>gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 877

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 320/844 (37%), Positives = 503/844 (59%), Gaps = 38/844 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I    I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  + 
Sbjct: 67  ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR  LI+G GNFGS+DGD  AA R
Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G  GIAVGMAT 
Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  NPDI +  L + +  PDFPTGA ILG +GI+ AY TGRG+ V
Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  + +I+V EIPY+V K  ++EK+ +LVR+K+I  + D+RDE++R+G R
Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV ++K+G S ++ILNQLY+ T LQ  +++NM+AL    P+   L  IL  ++  +EEVV
Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  ++ L KA++R ++L+G+ IAV N+DEV++IIR S +   A+  L QR         
Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLT L  + +  E+  L  EI+    
Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           I++S  +L+ +I      + +     RRT IV G    + DED I  + +V+T++   Y+
Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR Q RGG G S      +D + ++ + STH+ +L  +S   +++ +  ++P 
Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN++ + + E I +++   E+    +NLY+V  +K G +++  LS + +I
Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIISLLVTQENYED-DNLYLVTVSKLGIIKKTSLSLYKRI 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +++G IA+ L   DE+L+    T+E++I++    G+ VRF     R  + R S+GV+GI+
Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758

Query: 729 LAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L + + V+  +             E      H+   R+   G    IT     +     I
Sbjct: 759 LGENEVVVGASSTDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKTEKAGNLAFI 818

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  +  E       IL ++++G   RTS       +R+ KG++   +   + I ++  + 
Sbjct: 819 SCVKGDE------EILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLE 872

Query: 846 PVND 849
            + +
Sbjct: 873 KIYE 876



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 105/237 (44%), Gaps = 14/237 (5%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I + +++ DE++ +   ++ +     T LGQ  RF ++  +  A  +    R  SLA   
Sbjct: 447 IKIAVENIDEVIKIIRASKSDAEA-QTTLGQ--RFDLNEAQTKAIVDMRLGRLTSLAI-- 501

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERC 790
           + +   I    +           H      +++   + I S  +D     V G+I +   
Sbjct: 502 EKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVD 561

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  +++ +LT+++  + KR +  ++R+ NR G G       K +    L  +   + +
Sbjct: 562 EDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTATTYKDD---NLKNILVASTH 618

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
             +++++ K  + R+  ++I   S+  KGV   +     KDE ++S+   +E+   D
Sbjct: 619 SDLLILTSKARIFRLRTHQIPDLSKQAKGVPFINLIPIEKDEDIISLLVTQENYEDD 675


>gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2]
 gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580]
 gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2]
          Length = 807

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 303/889 (34%), Positives = 474/889 (53%), Gaps = 93/889 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLAA 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  ID+P+  +D LME ++GPDFPTG +I G+ GIK AY TG+G I+IRG + IE
Sbjct: 189 VIDAVIKRIDSPNCSVDDLMEFVKGPDFPTGGIIQGKEGIKKAYETGKGKIIIRGKAEIE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G R+QIV+TEIP++VNKA +++K+ E   E+++  I+++RDE+DR G R+VIELK+ 
Sbjct: 249 TIRGGRQQIVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ  ++ NMVA++  +P    L  IL A++  ++EV+  R++Y L
Sbjct: 309 ADAQGILNFLYKNTDLQIPYNFNMVAIHNRRPMLMNLTSILDAYIGHQKEVITNRSQYEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++R H++ GL  A++ LDEV+  IR S +   A+  L+++                 
Sbjct: 369 KKAKERHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   L  +IKE  +ILS+  +L
Sbjct: 412 ---------FAFTEPQAEAIVSLQLYRLTNTDITALQEEAKELDQKIKELEEILSNDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +IK  L  VK    + RR+ I E + +++      +  ED+ VTV+  GY+KR     
Sbjct: 463 LKVIKDSLKKVKKTYASQRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYIKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +     ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRLLCQLEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDLG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           + + NI+S++  E I   +P  E   S    Y++F TK+G  +R +L  +         +
Sbjct: 578 QHITNIISIDSDESIVKAIPVREFTESE---YLLFFTKNGMAKRTQLMQYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V       D+ + T  G  + F    + V   R + GV+G++L  GD 
Sbjct: 635 ALNLKGDDEVVDVHVTDGTKDLFIATHSGYGLWFTEDEVSVVGAR-AAGVKGVNLKDGDF 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V S  ++   D                                                 
Sbjct: 694 VASGQVLEEKDV------------------------------------------------ 705

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ++ V+++G  KR +  +F  ++R+ +G+      K  +   +  +   + +DQI 
Sbjct: 706 -----LVLVTQRGSIKRMNRSEFEKTSRAKRGVLMLRELKK-KPHRIAGLLACSYHDQIT 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           L ++KG    + V EI++  R + G  I    +   V  V  I + E+ 
Sbjct: 760 LQTEKGITEEMLVKEIKLHDRYSNGSFIIDEDEAGEVTDVW-ISKHELE 807


>gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16]
 gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16]
          Length = 807

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/890 (32%), Positives = 468/890 (52%), Gaps = 91/890 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K Y
Sbjct: 3   KSERYLDLPLEEVIGDRFSRYSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R  LI+  GN GSVDGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  L+ DL K TVD+ PN+D S +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAISAELMRDLDKGTVDYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E++DG   ++  P   LD L+EII+GPDFPTG ++ G  GI+ AY TG+G IV+R
Sbjct: 183 PHHLPEIIDGITLLMQKPHTSLDELLEIIKGPDFPTGGIVQGSNGIRQAYETGKGKIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE+T G R+QIV+TEIPY+V KA++++K+ E+  +K++  IA++RD++DR G R+V
Sbjct: 243 GRTAIEETRGGRKQIVITEIPYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A  + IL+ L++ T LQ  +  NMVA++   P+   L+ +++A++  +++V  R
Sbjct: 303 VELKKEADPEAILHYLFKNTDLQVTYHFNMVAIHNKTPKLMGLLDLMQAYIDHQKQVFTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L KA DRAH++ GL  AV+ LDEV+ +IR S + + A+  L  +           
Sbjct: 363 RSQFELKKAVDRAHIVEGLMKAVSILDEVIAVIRASKDKKDAKANLQSQ----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   L  +I E   IL
Sbjct: 412 ---------------FGFTEPQAEAIVTLQLYRLTNTDITTLQKEAEELEKQIAELKAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVK 549
           +S  +L+ +IK+EL  +K    +PRRT I   + +++    +    ED+ VT++  GYVK
Sbjct: 457 ASEKKLISVIKKELNQIKKTFASPRRTEIRAEIEEIKINMDMLIASEDVRVTITKAGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A  + G G     M++ D +      +T   VL F+  G      V  LP  
Sbjct: 517 RTSLRSYSASSQDGPG-----MKEGDRLLLSQEANTTDVVLLFTKRGSYLYVPVHSLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N+++++  + I       E   +    Y++F T+ G  +R+ L+ +    
Sbjct: 572 RWKDDGQHVANLVAIDADDEIIAAQIIREFAET---KYLLFMTRAGMAKRSTLNLYQAQR 628

Query: 670 RSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+KL   DE++ V     + ++ + T  G  + F    + +   R + GV+GI+
Sbjct: 629 YSKPLMALKLKEGDEVVRVLLTDGQQELFVATAFGYGLWFSEEDVSLVGQR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  I        D+                                          
Sbjct: 688 LKEGDYCIGAEAFGLEDS------------------------------------------ 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L  + +G  K+ +  +F  S+R+ +G+      K N    LV +  V 
Sbjct: 706 ---------VEFLVATHRGAVKKMAITEFEKSSRAKRGVLMLRELKNNPH-RLVGLKRVR 755

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             D+   + + KG +I +   + R A R + G   F   +    +++ R+
Sbjct: 756 SQDETFAIETAKGDMIAISPRDYRRADRYSNGSYAFDQHESGDALTLVRV 805



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 99/290 (34%), Gaps = 21/290 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I       +S   L  V   +   +++   S      R+    +K+
Sbjct: 435 ITTLQKEAEELEKQIAELKAILASEKKLISVIKKELNQIKKTFASPRRTEIRAEIEEIKI 494

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +             E+  +  TK G   R  + +    +        G+   +GD+++  
Sbjct: 495 NMD------MLIASEDVRVTITKAGYVKRTSLRSYSASSQDG----PGMK--EGDRLLLS 542

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 D            Y+   S        D + + +L    + +  I+ +  +E  
Sbjct: 543 QEANTTDVVLLFTKRGSYLYVPVHSLPDIRWKDDGQHVANLVAIDADDEIIAAQIIREF- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            + +++L ++  G  KR++   ++   R  K + A  + + +E   +V V   +   ++ 
Sbjct: 602 AETKYLLFMTRAGMAKRSTLNLYQAQ-RYSKPLMALKLKEGDE---VVRVLLTDGQQELF 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +  G  +     ++ +  +   GV   +  + +  +  E     + V+
Sbjct: 658 VATAFGYGLWFSEEDVSLVGQRAAGVKGINLKEGDYCIGAEAFGLEDSVE 707


>gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine
           microorganism HF4000_APKG8D23]
          Length = 898

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 340/937 (36%), Positives = 506/937 (54%), Gaps = 89/937 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +    I+DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+GM Q G   +K Y K
Sbjct: 3   ENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGYSK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  GEVMGKYHPHG+ A+YD + RMAQD+SLR  LI+GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYTES 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  +LDD+ KDT+D  PN+D +  EP VL AR PN+L+NG  GIAVGMAT IP H
Sbjct: 123 RLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIPPH 182

Query: 194 NLGEVVDGCVA-------------VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           NL EV                   + + P ID    ME ++GPDFPTGA I G  GI + 
Sbjct: 183 NLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGILDM 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG G   IR    +++ S  + ++VV  IPYQV KA ML+ IAELVR+  I  I D+R
Sbjct: 243 YRTGNGRFQIRSDVEVQEDSRGK-RLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIRDIR 301

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES ++G RVVIE+K+ A    +LNQLY+ + LQ  +S NM+ +   +P +  L  IL  
Sbjct: 302 DESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTILHT 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  RE VV RRT++  +KA  RAH+L GL  A   + E++ + R S + +   + L   
Sbjct: 362 YVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFEQYLRG- 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q +AI E RL +LT L   ++ +EL  L
Sbjct: 421 -----------------DEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKL 463

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL SR R L II  EL  V D     RR+RI    L M+ ED +  + +V+
Sbjct: 464 KGAIKDYQNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDREDLVAEQAIVI 523

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +++   Y++ +P+  +R Q RGGKG  GVV ++ED  + +    +   +L F+ +G VY 
Sbjct: 524 SLTRDNYIRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYG 583

Query: 601 EKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVR 658
            + W  P  S   RG  + N+L+ +   E++ +I+P       +    Y++FAT +G ++
Sbjct: 584 LRAWETPSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIK 643

Query: 659 RNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++LS++++INR+GK A++      D ++SV   T  + ++L +  G   RF  +  +  
Sbjct: 644 KSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSR 703

Query: 717 ----------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                            GR S GV G+ L KGDQVI M +      D+D  +  +     
Sbjct: 704 VDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVT----DDFDTSVLTISRYGM 759

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
            +R   G  E    L +DS                     + V ++  G       +R +
Sbjct: 760 AKRSRLGSGEMKPVLDDDS---------------------MPVLDEDGGLVQQRDGYRRT 798

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIA-SRATK 878
           NR  +G+R   +   +    +V+V  V D +DQ+ +++  G +IR+   + +    + TK
Sbjct: 799 NRGTRGVRTMSLRDGD---HIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTK 855

Query: 879 GVVIFSTAKDER------VVSVERIRESEIVDEAEST 909
           G  I      +R      ++ V R+  +++VD +++ 
Sbjct: 856 GTRIMELRNADRTGYVDEIIFVARLP-ADLVDSSDAE 891


>gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 722

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 305/774 (39%), Positives = 456/774 (58%), Gaps = 86/774 (11%)

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGM
Sbjct: 1   AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRG
Sbjct: 61  ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR 
Sbjct: 121 SITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 180

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++
Sbjct: 181 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 240

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +      
Sbjct: 241 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ------ 294

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +
Sbjct: 295 --------------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 334

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
              IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  
Sbjct: 335 LKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKR 394

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + 
Sbjct: 395 GYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYE 454

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F
Sbjct: 455 VPEYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDNYLFFTTKHGVVKRTTLSQF 511

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +I +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV   R + GVR
Sbjct: 512 AKIRQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVMG-RTAAGVR 570

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+VI M ++   +                                        
Sbjct: 571 GIRLREGDEVIGMEVLEDDEK--------------------------------------- 591

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+ 
Sbjct: 592 --------------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMK 635

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V   + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 636 TVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 689


>gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 834

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 306/905 (33%), Positives = 472/905 (52%), Gaps = 94/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   QEKERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ R +QDW +R LL++  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ KDTVDF  N+D S +EPVVL +R+PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  +++PD  +D LM+ I+GPDFPTG  I G  G+K AY TG+G IV+
Sbjct: 182 PPHHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G ++QIV+TEIPY+VNKA +++++ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RGKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A +  IL+ LY+ T LQ  ++ NMVA+    P+   L  +L+A++  ++EVV 
Sbjct: 302 VVELKKEADSKGILHYLYKNTDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA++RAH++ GL  A++ LDEV++ IR S + + A+  L             
Sbjct: 362 RRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDM---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      +  E + L   I++   I
Sbjct: 412 ----------------YQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLIEKLEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LSS   L+  IK+EL  +K +    RRT I + + D++      I  ED+ VTV+  GYV
Sbjct: 456 LSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A      G     M++ D +     ++T  ++L F+  G      V +LP 
Sbjct: 516 KRSSLRSYAASNGEPPG-----MKETDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLPE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              +  G+ + N+++++  + I T +P  E   S    YV+FATK G V++  LS++  Q
Sbjct: 571 IRWKDSGQHVANLVAMDNDDDILTAIPVKEFNDSE---YVLFATKLGMVKKTVLSEYKAQ 627

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N    +A+KL   DE++SV      +DI   T  G  + F    +     R + GV+ I
Sbjct: 628 RNSKALMAVKLKKDDEVISVTLSDGTHDIFFATHTGYGLWFTEEEVSATGQRTA-GVKAI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V+S                                                  
Sbjct: 687 NLKKDDFVVSCMSFKEE------------------------------------------- 703

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +  V+++   K+     F  ++R+ +G+      K      + ++ P+
Sbjct: 704 --------SPPDLFLVTQRAAYKKMKLNVFEKTSRAKRGLVMLKELKRYPH-RVASLLPI 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER----IRESEIV 903
                I + +  G    + V  IR   R T G  +F T     V+ V         +++ 
Sbjct: 755 TKYGSIFVQTKNGNTDTIEVASIRSNDRYTNGSFLFDTGDTGEVIDVWFEEGDAPNTDLD 814

Query: 904 DEAES 908
           DE  S
Sbjct: 815 DEGSS 819


>gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032]
 gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus
           SAFR-032]
          Length = 812

 Score =  613 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 306/896 (34%), Positives = 481/896 (53%), Gaps = 91/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QQERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+DG +  I+ P   ++ LM +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G R+QIV+TEIPY+VNKA +++K+ E   E+++  I+++RDE+DR G R+V
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A+ +LN LY+ + LQ  ++ NMVA++  +P   TL  IL A++A ++EVV  
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L KA++R H++ GL  A++ LDEV+  IR S +   A+  LM++           
Sbjct: 363 RSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +R+E N L + I E  DIL
Sbjct: 412 ---------------YDFTEAQSEAIVSLQLYRLTNTDITQLRDEANELDVRIAELEDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVK 549
            +  +LL +I   L  +K      RR+ I E + +++      I  ED+ VTV+  GY+K
Sbjct: 457 GNEKKLLKVITNSLKKLKKTYADDRRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A      G     M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSYAASNGKDFG-----MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+S+++ E I   +P  E + +    Y++F TK G V++ KL  +    
Sbjct: 572 RWKDMGQHITNIISIDRDESIQKAIPIKEFDETS---YLLFFTKGGMVKKTKLLQYKAQR 628

Query: 670 RSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+ L   DE++ V   T + ++ + TK G  + F    + V   R + GV+GI+
Sbjct: 629 YSKPLVALNLKGDDELVDVHVTTGQQELFIATKNGYGLWFDEEEVSVVGPR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+S  I+                                               
Sbjct: 688 LKDGDEVVSGQIINP--------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K   ++  +++G  KR +  +F  ++R+ +G+      K N    +V+V   +
Sbjct: 703 -------KNDVLVLTTQRGAVKRMNLSEFDKTSRAKRGVLMLRELKKNPH-RIVSVIAAS 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            +D + + ++KG  I + ++ +R   R + G  I    +   V  V    +    D
Sbjct: 755 LHDTLEIDTEKGATIPLDISTLRANDRYSNGSFIVDEEEQGEVTHVLVAPQPAPDD 810


>gi|13638291|sp|Q57532|GYRA_MYCLE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mle gyrA
            intein
          Length = 1273

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 273/780 (35%), Positives = 421/780 (53%), Gaps = 90/780 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATN
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ D     ++N D D + +    ME ++GPDFPT  +I+G  GI +AY TGR
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGR 669

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
            GSI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SD
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR          
Sbjct: 790  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR---------- 839

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                            +G    + + ++Q +AIL+++L RL  L R  I ++L  + +EI
Sbjct: 840  ----------------VGVVELLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEI 883

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++ 
Sbjct: 884  ADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITE 943

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 944  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAY 1003

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+D
Sbjct: 1004 ELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTD 1060

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1061 FDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVR----------------------------------------- 1139

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ ++L  +  G+ KRTS  ++ +  R GKG+    V      G+LV 
Sbjct: 1140 ------------EDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLT--VMYDRRRGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/131 (52%), Positives = 91/131 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYT 131
             DPPAA RY 
Sbjct: 121 GNDPPAAMRYC 131



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 95/242 (39%), Gaps = 13/242 (5%)

Query: 521  VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
             E +  +           +V  +  G VK+  L+ + + R G  G   + +RD D +   
Sbjct: 1026 EERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSG--GIVAINLRDNDELVGA 1083

Query: 581  FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             + +    +L  S+ G   +       +  P  R  + +  +  N  +R+ ++    ED 
Sbjct: 1084 VLCAADGDLLLVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVRED- 1141

Query: 641  SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
                  Y++ AT  G  +R  + ++    R GK  + +        ++      +++++ 
Sbjct: 1142 -----TYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELY 1196

Query: 698  LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
              T  G  +R     +R  AGR + GVR ++L +GD ++++A      AD       +  
Sbjct: 1197 AITSGGGVIRTTARQVRQ-AGRQTKGVRLMNLGEGDTLLAIARNAEESADGVSVKVMISR 1255

Query: 758  MS 759
              
Sbjct: 1256 SR 1257


>gi|221229349|ref|YP_002502765.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
 gi|219932456|emb|CAR70099.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
          Length = 1249

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 273/780 (35%), Positives = 421/780 (53%), Gaps = 90/780 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATN
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ D     ++N D D + +    ME ++GPDFPT  +I+G  GI +AY TGR
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGR 669

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
            GSI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SD
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR          
Sbjct: 790  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR---------- 839

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                            +G    + + ++Q +AIL+++L RL  L R  I ++L  + +EI
Sbjct: 840  ----------------VGVVELLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEI 883

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++ 
Sbjct: 884  ADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITE 943

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 944  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAY 1003

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+D
Sbjct: 1004 ELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTD 1060

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1061 FDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVR----------------------------------------- 1139

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ ++L  +  G+ KRTS  ++ +  R GKG+    V      G+LV 
Sbjct: 1140 ------------EDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLT--VMYDRRRGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/131 (52%), Positives = 91/131 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYT 131
             DPPAA RY 
Sbjct: 121 GNDPPAAMRYC 131


>gi|15826871|ref|NP_301134.1| putative DNA gyrase subunit A [Mycobacterium leprae TN]
 gi|13092418|emb|CAC29514.1| putative DNA gyrase subunit A [Mycobacterium leprae]
          Length = 1249

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 273/780 (35%), Positives = 421/780 (53%), Gaps = 90/780 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATN
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ D     ++N D D + +    ME ++GPDFPT  +I+G  GI +AY TGR
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGR 669

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
            GSI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SD
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR          
Sbjct: 790  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR---------- 839

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                            +G    + + ++Q +AIL+++L RL  L R  I ++L  + +EI
Sbjct: 840  ----------------VGVVELLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEI 883

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++ 
Sbjct: 884  ADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITE 943

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 944  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAY 1003

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+D
Sbjct: 1004 ELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTD 1060

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1061 FDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVR----------------------------------------- 1139

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ ++L  +  G+ KRTS  ++ +  R GKG+    V      G+LV 
Sbjct: 1140 ------------EDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLT--VMYDRRRGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/131 (52%), Positives = 91/131 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYT 131
             DPPAA RY 
Sbjct: 121 GNDPPAAMRYC 131


>gi|1122296|emb|CAA92430.1| DNA gyrase A subunit [Mycobacterium leprae]
 gi|1262357|emb|CAA94713.1| DNA gyrase A, and intein [Mycobacterium leprae]
          Length = 1273

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 273/780 (35%), Positives = 421/780 (53%), Gaps = 90/780 (11%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATN
Sbjct: 550  NTEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATN 609

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+ D     ++N D D + +    ME ++GPDFPT  +I+G  GI +AY TGR
Sbjct: 610  IPPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGR 669

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
            GSI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SD
Sbjct: 670  GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  
Sbjct: 730  RVGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEH 789

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR          
Sbjct: 790  QLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIAR---------- 839

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                            +G    + + ++Q +AIL+++L RL  L R  I ++L  + +EI
Sbjct: 840  ----------------VGVVELLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEI 883

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++ 
Sbjct: 884  ADLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITE 943

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K +
Sbjct: 944  TGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAY 1003

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+D
Sbjct: 1004 ELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTD 1060

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +   GR + G
Sbjct: 1061 FDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPMGRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVR----------------------------------------- 1139

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ ++L  +  G+ KRTS  ++ +  R GKG+    V      G+LV 
Sbjct: 1140 ------------EDTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLT--VMYDRRRGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/131 (52%), Positives = 91/131 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYT 131
             DPPAA RY 
Sbjct: 121 GNDPPAAMRYC 131



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 95/242 (39%), Gaps = 13/242 (5%)

Query: 521  VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
             E +  +           +V  +  G VK+  L+ + + R G  G   + +RD D +   
Sbjct: 1026 EERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSG--GIVAINLRDNDELVGA 1083

Query: 581  FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             + +    +L  S+ G   +       +  P  R  + +  +  N  +R+ ++    ED 
Sbjct: 1084 VLCAADGDLLLVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVRED- 1141

Query: 641  SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDIL 697
                  Y++ AT  G  +R  + ++    R GK  + +        ++      +++++ 
Sbjct: 1142 -----TYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVVDEDSELY 1196

Query: 698  LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
              T  G  +R     +R  AGR + GVR ++L +GD ++++A      AD       +  
Sbjct: 1197 AITSGGGVIRTTARQVRQ-AGRQTKGVRLMNLGEGDTLLAIARNAEESADGVSVKVMISR 1255

Query: 758  MS 759
              
Sbjct: 1256 SR 1257


>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
 gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
          Length = 963

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 325/911 (35%), Positives = 490/911 (53%), Gaps = 69/911 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  + +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++  K +
Sbjct: 105 EDERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 164

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+S+   L++G GNFGS+D DPPAA RYT
Sbjct: 165 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYT 224

Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL+ AA   LL D+G D VDF   +DGS  EP VL AR PN+L+NG  GIAVGMAT+I
Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284

Query: 191 PTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           P HNL EV +  V    +P    L+ L+E++  PDFPTG +I+  R G K  Y TG+G +
Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344

Query: 249 VIRGVSHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +RG + +EK SG       R+ +V+T IPYQ NKA++ E+IA+LV  + I  ++D+RDE
Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RVV+E++RGA A+ +L+QLY  T LQ+  SVN+V L G +P+  +L+ I++ F+
Sbjct: 405 SDRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFL 464

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFR + V RR ++ L KA  R HV+ G     A  D VV  IR + +  TA+  L ++  
Sbjct: 465 AFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEK-- 522

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                    +LSE Q  A+L + L RLTGL  D ++ E   L  
Sbjct: 523 -----------------------PFWLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTA 559

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL----DMEDEDCIVREDM 538
            +++   +L  RSR++  + +E   ++D     RRT I          M     ++    
Sbjct: 560 RVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRTDIDTDAQIHAKKMNVTLDMLNSPS 619

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V +++ GY+KR+  +V+  Q R  +GR+   MR  D VT +   +   +VLFF+  G V
Sbjct: 620 LVIMTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRV 679

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGN 656
           +  + + +P  S  A G     +L L +GE IT ++P    E+        + F T  G 
Sbjct: 680 HAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGL 739

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R   S+F+ I  +GK A+ L   D +  V+   + + I++    G  + F   ++R  
Sbjct: 740 IKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFDADSVRA- 798

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV+ ++                                       DT E     
Sbjct: 799 QGRAAAGVKAMAFKPD--------------------------GLDDTSEDDDTSEALPAN 832

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             +    + SEE  ++   K   +  VS  G GKR S   F   +R+G+G +   + K +
Sbjct: 833 ASAGDVEDDSEEDGEDEDAKGPMLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGS 892

Query: 837 EIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAKDERVVSV 894
           ++ AL      +D  + +I+ S  G + R  V  IR  + RA KGV +   +  + V  +
Sbjct: 893 KLAALCLTGLDSDEHEHVIIGSQGGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDI 952

Query: 895 ERIRESEIVDE 905
             +      DE
Sbjct: 953 TLLPAELGDDE 963


>gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42]
          Length = 807

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 303/888 (34%), Positives = 478/888 (53%), Gaps = 92/888 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSS 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I++PD  +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IRG + +E
Sbjct: 189 VIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVV+ELK+ 
Sbjct: 249 SVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  R+ + L
Sbjct: 309 ADAKGILNFLYKNTDLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++R H++ GL  A++ LDEV+ +IR S + + A++ +M +                 
Sbjct: 369 QKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNVMSK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   L  +I+E   ILS   +L
Sbjct: 412 ---------FTFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L  +K      RR+ I E + +++      +  ED+ VTV+  GYVKR     
Sbjct: 463 LKVITSSLKKLKKTYADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRLIHQFEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           + + NI+++++ E I   +P  E + S    Y++F TK+G V+R +++ +         +
Sbjct: 578 QHVTNIITIDRDETIVKAIPVKEFDPSS---YLLFMTKNGMVKRTEMTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V      + + + T+LG  + F    + V   R + GV+GI++  G  
Sbjct: 635 ALNLKGDDELIDVHVTDGGSQLFIATRLGYGLWFGEDEVNVVGAR-AAGVKGINVKDG-- 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                                                      D+ V G I  E      
Sbjct: 692 -------------------------------------------DTVVSGQILHET----- 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ++ V+++G  KR +  +F  ++R+ +G+      K N   A V VF     D I 
Sbjct: 704 ---DSLVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLRELKKNPHRA-VGVFACALADMIA 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             ++KG  I + V  +R   R + G       +   V  V RI  S++
Sbjct: 760 AETEKGERIEIAVKSLRANDRYSNGSFFTDEDETGPVTDVWRIPASDV 807


>gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
 gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
          Length = 820

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 319/899 (35%), Positives = 509/899 (56%), Gaps = 101/899 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G   +K Y
Sbjct: 3   ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+P
Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E ++   + IDN +I ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG I++R
Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H EK    R  I++ EIPYQ+ KA  + K  ELV+E R+  +  +RDESDR G R+V
Sbjct: 243 SKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+  +  ++LN L++ T L++ FSVN +AL   KP +  L  ++K FV  R  V++R
Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY LNKA+ RAH++ G  + + +L+ V+ +I+ S + E A+ +L+ +           
Sbjct: 362 RTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q ++ILEL+L  LT L  + I+ E   L  +I     IL
Sbjct: 411 ---------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + +     IIK+EL  +K++    RRT I    L+         + +V+T S+ GY+KR 
Sbjct: 456 NDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETS---LEPNKQVVLTTSYDGYMKRT 512

Query: 552 PLSVYRAQRRGGKGR--SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            L+ Y+ +  G  G    G     +DF+  + + +TH  +LFF+  G  +  +V+ +P  
Sbjct: 513 DLNEYKIKNIGVGGIVNMGAYKLKKDFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPEV 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPED--ESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              ++G+A+ N++ +++ ++I + +   +   +   NN YV+  TK G +++  L  + +
Sbjct: 573 YKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSK 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N++G  A+K+   D ++  +    +++IL+  K G+ +RF  S +R    R ++GV+ I
Sbjct: 633 PNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMT-RITLGVKSI 691

Query: 728 SLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +L+K    D+VI M  +     +Y                                    
Sbjct: 692 TLSKLLSKDKVIGMICINDPKKEY------------------------------------ 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          IL +SE GF K ++   +R +++  K I  T     ++ G LVA+
Sbjct: 716 ---------------ILVISENGFVKISNLSHYRKTDQGIKTINIT-----SKTGCLVAI 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVIFSTAKDERVVSVERIR 898
             V + D II+++  G  IR+PV EI +  RAT     KG+ + +     ++ SV ++ 
Sbjct: 756 KNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKGNKGKGIKLINLKS--KIASVAKVD 812


>gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
 gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
          Length = 798

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 302/831 (36%), Positives = 470/831 (56%), Gaps = 48/831 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  +   D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K
Sbjct: 2   ERVLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H
Sbjct: 122 RLSAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGEV+D  +  ID+P   +D LM +++GPDFPTG +I G+ GIK AY TG+G IVIRG 
Sbjct: 182 HLGEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGGIIQGKEGIKTAYETGKGKIVIRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++ IV+TEIPY+VNKA +++KI EL  EK++  I D+RDE+DR G R+VIE
Sbjct: 242 ATIEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +++  +A+ ILN LY+ T LQ  +S NMVA++  +P+   L  +L A++  ++EVV  R+
Sbjct: 302 VRKDGNAEGILNYLYKNTDLQITYSFNMVAIHERRPKLLNLPQMLDAYIEHQKEVVANRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA++RAH++ GL  AV+ LDE++  IR S + + A+  LM +             
Sbjct: 362 RYELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLMDQ------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT     D+R E N+L  +I++   IL S
Sbjct: 409 -------------YGFTEPQAEAIVTLQLYRLTNTDIYDLREEANALHDKIEQLTSILES 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
             +LL +IK EL  +K      RRT I E + +++ E    I  ED++VT++  GY+KR 
Sbjct: 456 EKKLLSVIKSELRKMKKTYADERRTTIEEEIKEIKIEMNVVIPEEDVIVTITKDGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y A      G     M++ D +  +F ++T  ++L F++ G      V+ LP    
Sbjct: 516 SLRSYSASNGQDIG-----MKEGDRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +I+ L++ E++T+ +P  + E    N Y++F TK G V++  L  +     S
Sbjct: 571 KDLGQHISHIIPLDRDEQLTSAIPIADFE----NGYLLFITKQGFVKKTHLVHYKAQRYS 626

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +AM+L   DE+++V        I L T+ G  + F    I     R + GV+GI L 
Sbjct: 627 KPLVAMRLKEDDEVVNVYQTNGMGHIFLVTQYGYGLLFSEEEIGEVGVR-AAGVKGIHLK 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+S           DE I  +    A +++   + E  T  K    +   +     
Sbjct: 686 DGDDVVS------GQQATDENIILVTKRGAAKKIARAEIELSTRAKRGQLLVKEVKTNPH 739

Query: 791 QELK---LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +    +   +++  +EKG  +     + R+S+R G      D  +   +
Sbjct: 740 RLVSCHFISHGWVILKTEKGITEEVHVDELRLSDRYGNVTYVIDCDETGNV 790



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 78/214 (36%), Gaps = 24/214 (11%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM--------A 739
               +E+ I+  TK G   R       + +   S G + I + +GD+++ M         
Sbjct: 495 VVIPEEDVIVTITKDGYIKRTS-----LRSYSASNG-QDIGMKEGDRLLGMFEMNTTHTL 548

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++     +Y     Y       + L    +  I   +++         +       +  +
Sbjct: 549 LLFTNKGNYLYCPVYELPDIRWKDLGQHISHIIPLDRDEQLTSAIPIADF------ENGY 602

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L ++++GF K+T    ++   R  K + A  + + +E   +V V+  N    I LV+  
Sbjct: 603 LLFITKQGFVKKTHLVHYKAQ-RYSKPLVAMRLKEDDE---VVNVYQTNGMGHIFLVTQY 658

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           G  +     EI        GV        + VVS
Sbjct: 659 GYGLLFSEEEIGEVGVRAAGVKGIHLKDGDDVVS 692


>gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
 gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
          Length = 812

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 305/896 (34%), Positives = 480/896 (53%), Gaps = 91/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QQERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+DG +  I+ P   ++ LM +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G R+QIV+TEIPY+VNKA +++K+ E   E+++  I+++RDE+DR G R+V
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A+ +LN LY+ + LQ  ++ NMVA++  +P   TL  IL A++A ++EVV  
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L KA++R H++ GL  A++ LDEV+  IR S +   A+  LM +           
Sbjct: 363 RSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +R+E + L + I E  DIL
Sbjct: 412 ---------------YDFTEAQSEAIVSLQLYRLTNTDITQLRDEASELDVRIAELEDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVK 549
            +  +LL +I   L  +K      RR+ I E + +++      I  ED+ VTV+  GY+K
Sbjct: 457 GNEKKLLKVITNSLKKLKKTYADERRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A      G     M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSYAASNGKDFG-----MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+S+++ E I   +P  E + +    Y++F TK G V++ +L  +    
Sbjct: 572 RWKDMGQHITNIISIDRDESIQKAIPIKEFDETS---YLLFFTKGGMVKKTELLQYKAQR 628

Query: 670 RSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+ L   DE++ V   T + ++ + TK G  + F    + V   R + GV+GI+
Sbjct: 629 YSKPLVALNLKGNDELVDVHVTTGQQELFIATKNGYGLWFDEEEVSVVGPR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+S  I+                                               
Sbjct: 688 LKDGDEVVSGQIIDP--------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K   ++  +++G  KR +  +F  ++R+ +G+      K N    +VAV   +
Sbjct: 703 -------KNDVLVLTTQRGAVKRMNLSEFDKTSRAKRGVLMLRELKKNPH-RIVAVIAAS 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            +D + + ++KG  I + ++ +R   R + G  I    +   V  V    +    D
Sbjct: 755 LHDTLEMDTEKGATIPLDISTLRANDRYSNGSFIVDEEEQGEVTHVLVTPQPAPDD 810


>gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
 gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
          Length = 806

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 302/887 (34%), Positives = 474/887 (53%), Gaps = 92/887 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+ 
Sbjct: 9   DLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKT 68

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL  
Sbjct: 69  VGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSP 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LGE
Sbjct: 129 IASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+IRG + IE
Sbjct: 189 VIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGIDGIRKAYETGKGKIIIRGKAEIE 248

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVVIELK+ 
Sbjct: 249 TIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKE 308

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV  R+ Y L
Sbjct: 309 ADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYEL 368

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +                 
Sbjct: 369 QKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK----------------- 411

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       +E Q  AI+ L+L RLT      ++ E   LG +I+E   ILS+  +L
Sbjct: 412 ---------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKL 462

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRVPLSV 555
           L +I   L ++K +    RR+ I E + +++      +  ED+ VTV+  GY+KR     
Sbjct: 463 LKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRS 522

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           + A      G     M+D D +   F ++T   +L F++ G      V +LP    +  G
Sbjct: 523 FAASNGQDFG-----MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKI 674
           +   N++++++ E I   +P  E + S    Y++F TK+G V++ +L+ +         +
Sbjct: 578 QHFSNLITIDRDETIVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHYKAQRYSKALV 634

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI+L + D 
Sbjct: 635 ALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDF 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+                                                       E+ 
Sbjct: 694 VV-----------------------------------------------------SGEIL 700

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F      +++
Sbjct: 701 QQSDSIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFACGLEQRLM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             ++KG    +   E+R   R + G   F   +  +V +V R+   +
Sbjct: 760 AETEKGDRKELQAKELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806


>gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
 gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
          Length = 855

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 312/919 (33%), Positives = 470/919 (51%), Gaps = 124/919 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 12  VIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 136 QKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  LL  +G+ TVDF  N+D S QEP VL A+ P +L+NG  GIAVGMATN+P HN
Sbjct: 132 ASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIAVGMATNVPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+IDN D+  + L  II  PDFPTG  I+   GI  AY  GRGSIV+RGV+
Sbjct: 192 LGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIVSTDGIAEAYTQGRGSIVMRGVA 251

Query: 255 HIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            IE+         +  IVVTE+P+QVNKA+ +EK A LV   R+  I+D+RDESDR G R
Sbjct: 252 KIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGISDIRDESDRDGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR AS  V+L+ LY+ T L S F    +AL   +P + TL  IL+ F+ FRE+ +
Sbjct: 312 VVIELKREASPQVVLHHLYQQTDLMSKFGAIFLALVDSQPRQLTLKQILQEFLNFREQTL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+  + L  A  R H++ GL  A+ANLD V+ I+R +P+  TA+  L            
Sbjct: 372 IRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAKISL------------ 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                         +  + +SE Q  AIL + + RLTGL R  ++ E   L  +I++   
Sbjct: 420 --------------ESDLQMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRR 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV------------------------EGLL 525
           ++  RS L+  +K+EL S+K +   PRRTRI+                            
Sbjct: 466 LIDDRSELMKSLKKELRSLKRQYGDPRRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTT 525

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVS 584
            +        E+  +  +H GYV+R+      ++ R    +S +++ D +DF    ++ +
Sbjct: 526 AILQPVAPAEEETFLEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTN 585

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL--------SLNQGERITTIMPF 636
           T  ++   +  G  Y   V  +P  S ++RG  LI +L         ++  E I      
Sbjct: 586 TGQNLAIITRTGKAYPLNVGDIPTTSNRSRGTPLITLLPSSVTKDPPMSLQELILAHFIV 645

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                  +   ++  T+ G ++R  L++ + +   G   +KL  +DE+           +
Sbjct: 646 A---QHSDKTDLILVTQQGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQM 702

Query: 697 LLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L T  G+ +R P++  +    GR + G +   L K ++++S   V    +         
Sbjct: 703 ILATSGGRVLRLPVNDEQLPPMGRTAQGSQVTRLRKQERLVSCLTVPPKAS--------- 753

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                       +L VSE GF KR S  
Sbjct: 754 --------------------------------------------LLLVSELGFAKRISLD 769

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
             R + R   G +        +  AL  +  VN + +  L++ +  ++R  V+E+++ + 
Sbjct: 770 RVRSTTRGAIGTQLFQFK--GQKDALAGMVSVNSHQEAYLITSESRIVRFAVDEVKLQNE 827

Query: 876 ATKGVVIFSTAKDERVVSV 894
              G  +F     E ++ V
Sbjct: 828 EATGNRLFKLNTGETIIGV 846


>gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 770

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 333/793 (41%), Positives = 491/793 (61%), Gaps = 34/793 (4%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS
Sbjct: 1   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  
Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHR 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+GSIV+R  + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +
Sbjct: 181 AYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAV 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES R+G R VIE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+ 
Sbjct: 241 RDESSREGVRFVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIID 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++EV+VRRT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM 
Sbjct: 301 NYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMS 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE Q++AIL++RL RLTGL RD I++E N 
Sbjct: 361 R--------------------------FELSERQSQAILDMRLRRLTGLERDKIQSEYND 394

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDM 538
           L   I +  DIL+   R++ IIK+E+  VK +    RRT + +  +L +EDED I  ED+
Sbjct: 395 LLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDV 454

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++T+S+ GY+KR+    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG V
Sbjct: 455 LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRV 514

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P     A+G  ++N+L L++GE I TI+     +    N Y  F T+ G V+
Sbjct: 515 YRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINAR--KEDVANKYFFFTTQQGIVK 572

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  +S+F  I ++G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R    
Sbjct: 573 RTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNMG- 631

Query: 719 RNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++L +GD+V+  + IV   +        Y K   A      G   +     N
Sbjct: 632 RTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTAN 691

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            ++  G ++           + I+ +++ G   RT+  +   + RS  G++   + +  +
Sbjct: 692 ITAKNGPLAR---LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAK 748

Query: 838 IGALVAVFPVNDN 850
           I  +  V    ++
Sbjct: 749 IVTVALVEQEIED 761


>gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 726

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 301/810 (37%), Positives = 437/810 (53%), Gaps = 90/810 (11%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   D
Sbjct: 1   GFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIA
Sbjct: 61  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTGIKN 239
           VGMATNIP HNLGE+ +     +DN + D +    A+ME ++GPDFPT  +I+G  GI +
Sbjct: 121 VGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIAD 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++
Sbjct: 181 AYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNI 240

Query: 300 RDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L  ++
Sbjct: 241 EDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLI 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+ L+
Sbjct: 301 RHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLI 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                           + + E+Q +AIL+++L RL  L R  I ++L 
Sbjct: 361 E--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLA 394

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I RED+
Sbjct: 395 KIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDV 454

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                           +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G V
Sbjct: 455 XXXXXXXXXXXXXXXXLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRV 514

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V+
Sbjct: 515 YRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNGLVK 571

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-A 717
           + KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +   
Sbjct: 572 KTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM 631

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GV+G+     D ++S+ +V                           T  + +   
Sbjct: 632 GRATSGVQGMRFNADDYLLSLNVVREG------------------------TYLLVATSG 667

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +    I E   Q               G G  T  YD R                   
Sbjct: 668 GYAKRTAIEEYPVQ------------GRGGKGVLTVMYDRR------------------- 696

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
            G LV    V+++ ++  ++  G +IR   
Sbjct: 697 RGRLVGALIVDEDSELYAITSGGGVIRTAA 726



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 8/234 (3%)

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G     L   D +     C+  + IL  T  G+  R     +   A R + G    +L 
Sbjct: 480 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYEL-PEASRTARGQHVANLL 538

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                  +A V+   +  D     +   +   +       +        ++    ++E  
Sbjct: 539 AFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELV 598

Query: 791 -QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              L   E  +L VS  G   R S+ D   R   R+  G++    +  +    L+++  V
Sbjct: 599 GAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADD---YLLSLNVV 655

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRES 900
            +   +++ +  G   R  + E  +  R  KGV  +    +  R+V    + E 
Sbjct: 656 REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDED 709



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 9/233 (3%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +   LD+ DE++++   ++  DI    + G      I  I+  A  +    R  +L +  
Sbjct: 332 LVKALDALDEVIALIRASETVDI---ARQGLIELLDIDEIQAQAILDMQLRRLAALERQR 388

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +  +A +    AD ++ +   +      R    +  E       + +     +   ++L
Sbjct: 389 IIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDL 448

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E                   +R   R GKG++   + + +    +   F  + +D I
Sbjct: 449 IAREDVXXXXXXXXXXXXXXXXLYRSQKRGGKGVQGAGLKQDD---IVRHFFVCSTHDWI 505

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903
           +  + +G + R    E+  ASR  +G  + +      +ER+  V +IR  E  
Sbjct: 506 LFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDA 558


>gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens]
          Length = 915

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 319/935 (34%), Positives = 479/935 (51%), Gaps = 111/935 (11%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + S  EE      + +  E+  S++ YA++ ILGRA+PD RDGLKPVHRRILF M ++ +
Sbjct: 54  LRSTTEEHTAPIPIELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMRELNL 113

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+ +   L++G GNFGSVD DPP
Sbjct: 114 TPGTPYRKCARVVGEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDADPP 173

Query: 126 AAERYTECRLQKAAHFLLDDLGK-------------DTVDFRPNYDGSFQEPVVLCARYP 172
           AA RYTEC+L K A+  L +                 +V+F  N+D S  EP VL AR P
Sbjct: 174 AAMRYTECKLTKFAYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPARVP 233

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTG 228
            +LVNG  GIAVGMAT+IP HNLGEV D  + V            D L   +  PDFPTG
Sbjct: 234 VLLVNGAAGIAVGMATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDFPTG 293

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
            +I+G TG+  AYATG+GSIVIR  +H EK    R  IV TE+PYQV K+ +L K A+ +
Sbjct: 294 GLIMGTTGVARAYATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKTADAI 353

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-- 346
             +RI  IADLRDES R+G RVV ELKR A A+++L+ L++ T LQ+ F  N+VA++   
Sbjct: 354 NARRIEGIADLRDESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAVDHAL 413

Query: 347 -------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
                    P R TL   L+ +++FR + V  R  +   +A  R H++ GL +A AN+D 
Sbjct: 414 NDDGDDVRSPVRMTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATANVDA 473

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           VV +IR S  P  A+ +L++       I  +                  LSE Q  A+L 
Sbjct: 474 VVALIRASDAPADAKAKLVE----GGAIPAMGA----------------LSEDQASAVLA 513

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           L L+RLT L  D + +E   L ++++    ++S  + +   +  E+ ++K    TPRR+ 
Sbjct: 514 LTLSRLTTLEADKLDSERKDLEVKLEGLRKLMSEDAAVYDAVVDEVAAIKKAYPTPRRSE 573

Query: 520 IV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
           IV +G  ++ DED I      V V+  GYVKR  L  + AQ RGG+GR+ +       + 
Sbjct: 574 IVFDGDAELRDEDVIENARSAVLVARDGYVKRTSLEEFGAQSRGGRGRNALQ---GGTLR 630

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            L     H ++L  +  G  Y  + + +P  S  ARG  + ++L +++  RI  ++    
Sbjct: 631 HLVTCHDHDTLLCIADTGVAYGVRAFNVPQASRAARGVPVPSVLPVDRSTRIKGLLAVAH 690

Query: 639 DE------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           D          + L++V  T++G V++  L+ F  +   G IA+KL   D +     C  
Sbjct: 691 DTLQNPKPGDDDELFLVVLTRNGLVKKTPLAAFKGLTSRGLIAIKLGEGDAVTHARLCRA 750

Query: 693 ENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            + ++L T  G   RF      +    R + GVR ++L  GD ++ M +           
Sbjct: 751 SDSLILATAAGMVTRFAADDSELRSMSRTTRGVRAMNLRDGDAIVKMDVA---------- 800

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                           +L ++ +G+GKR
Sbjct: 801 ------------------------------------------GGDHSHVLVLTAEGYGKR 818

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            +  D R   R G G+ A    K  +   LV++ PV  ND++++V++ G ++R+    + 
Sbjct: 819 VALADLRSQKRGGMGVSAIKFKK--KGDDLVSICPVAPNDEVMVVTESGVIVRMDAASVT 876

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             SR   GV++   AKD+ +V +  +    +  +A
Sbjct: 877 AQSRTATGVLVQKAAKDDALVDLTVVPADLLSSDA 911


>gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
 gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
          Length = 816

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 317/899 (35%), Positives = 508/899 (56%), Gaps = 103/899 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G   +K Y
Sbjct: 3   ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+P
Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E ++   + IDN +I ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG I++R
Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H EK    R  I++ EIPYQ+ KA  + K  ELV+E R+  +  +RDESDR G R+V
Sbjct: 243 SKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+  +  ++LN L++ T L++ FSVN +AL   KP +  L  ++K FV  R  V++R
Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY LNKA+ RAH++ G  + + +L+ V+ +I+ S + E A+ +L+ +           
Sbjct: 362 RTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q ++ILEL+L  LT L  + I+ E   L  +I     IL
Sbjct: 411 ---------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + +     IIK+EL  +K++    RRT I    L+         + +V+T S+ GY+KR 
Sbjct: 456 NDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETS---LEPNKQVVLTTSYDGYMKRT 512

Query: 552 PLSVYRAQRRGGKGR--SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            L+ Y+ ++ G  G    G     +DF+  + + +TH  +LFF+  G  +  +V+ +P G
Sbjct: 513 DLNEYKIKKIGVGGIVNMGAYKLKKDFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPEG 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPED--ESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              ++G+A+ N++ +++ ++I + +   +   +   NN YV+  TK G +++  L  + +
Sbjct: 573 YKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSK 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N++G  A+K+   D ++  +    +++IL+  K G+ +RF  S +R    R ++GV+ I
Sbjct: 633 PNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMT-RITLGVKSI 691

Query: 728 SLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +L+K    D+VI M  +     +Y                                    
Sbjct: 692 TLSKLLSKDKVIGMICINDPKKEY------------------------------------ 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          IL +SE GF K ++   +R ++     I        ++ G LVA+
Sbjct: 716 ---------------ILVISENGFVKISNLSHYRKTDLKTINI-------TSKTGCLVAI 753

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVIFSTAKDERVVSVERIR 898
             V + D II+++  G  +R+PV EI +  RAT     KG+ + +     ++ SV ++ 
Sbjct: 754 KNVVNKDDIIIINQSGLTLRIPVTEIIVRVRATKGNKGKGIKLINLKS--KIASVAKVD 810


>gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 648

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 304/659 (46%), Positives = 431/659 (65%), Gaps = 41/659 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++I          +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MEDNIF-------DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSV
Sbjct: 54  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  
Sbjct: 114 DGDGAAAMRYTEARLSRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+   V +ID+      +  ++ +++I++GPDFPTGA+ILG  
Sbjct: 174 GIAVGMATNIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR 233

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  
Sbjct: 234 GIEEAYRTGRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDG 293

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DL D+S+R+G R+ IEL+R  +A+V+LNQLY++T LQ  F V M+AL   +P+   ++
Sbjct: 294 ITDLSDQSNREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNIL 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ 
Sbjct: 354 EMLNYYLRHQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKE 413

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                             L++VQ +AI+++RL  LTGL R+ + N
Sbjct: 414 GLIE--------------------------AFQLTDVQAQAIVDMRLRALTGLEREKLEN 447

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+ R  LLG+IK+E+L +  +    RRT I    LD+  ED I  
Sbjct: 448 EYKELMERIGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPE 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+V+T++ LGY+KR+    +++Q RGGKG  G+   +ED+V +LF+ STH  ++FF++ 
Sbjct: 508 QDVVITMTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNT 567

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           G VY+ K + +P     ARG A+IN+L L   E+IT ++P  E E   +  Y+  ATK 
Sbjct: 568 GRVYRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE---DGKYLFMATKK 623



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 168/462 (36%), Gaps = 41/462 (8%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSL-GIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
              I    L  +       I +++       I++ L I+       G +      +++  
Sbjct: 180 ATNIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAY 239

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
            T R       +  + D + +      + V+ L Y+           R   K    V  +
Sbjct: 240 RTGR---GKIRVRAVTDIEPMANGKSRIVVTELPYM-------VNKARLIEKIAELVRDK 289

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGF-VYKEKVWRLPIGSPQARGKALINILSLNQGE-RI 630
             D +TDL   S    +     L   V    V        Q +    + +L+L   E ++
Sbjct: 290 KIDGITDLSDQSNREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKV 349

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             I+             V   TK+   +  + +  ++      + + LD+ DE++     
Sbjct: 350 MNILEMLNYYLRHQEEVVTRRTKYELNKAEERAHILEG-----LLIALDNIDEVI----- 399

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
                I+  +K  Q  +  +          +  +  + L      +    + +   +  E
Sbjct: 400 ----RIIRNSKNAQAAKEGLIEAFQLTDVQAQAIVDMRLRAL-TGLEREKLENEYKELME 454

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-------KEQFILTV 803
           RI  ++ + A R+L+ G  +E   + +    +   +     EL L       ++  ++T+
Sbjct: 455 RIGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITM 514

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+ KR ++  F+  NR GKGI+     + + +  L   F  + ++ I+  ++ G + 
Sbjct: 515 TKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEEL---FMTSTHNYIMFFTNTGRVY 571

Query: 864 RVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902
           R+   EI  A R  +G  I +      DE++ ++  IRE E 
Sbjct: 572 RMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYED 613


>gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10]
 gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10]
          Length = 819

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 300/891 (33%), Positives = 483/891 (54%), Gaps = 90/891 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAM 131

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL EV+D
Sbjct: 132 ELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVID 191

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C+AV+  P+I+LD +M  I+GPDFPTG +I+G  GI +AY TG+G + +R  + IE   
Sbjct: 192 ACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRSKTVIESLR 251

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+ELK+ A A
Sbjct: 252 GGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + IL  L++ T LQ  ++ NMVA+    P++  L  +L A++  + EVV  RT++ L KA
Sbjct: 312 NGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVTHRTQFELEKA 371

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            DRAHVL GL  A+  LDEV+  I+ S N + A+  L                       
Sbjct: 372 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL----------------------- 408

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +E Q  +IL L+L RLT L    ++ EL+ L  +I+    IL S  +L+G+
Sbjct: 409 ---QWMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGV 465

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPLSVYRA 558
           I++EL+ ++++    RR+ I E + +++      +  ED++VT+S+ GY+KR  +  +  
Sbjct: 466 IRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSF-- 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R G       +++ D++T LF V+T  ++L F+S G  +   V ++P    +  G A+
Sbjct: 524 -TRSGGELESSGVKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAI 582

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N++ + + + I +++P    + +  +  +VF ++ G V+R  L +++        A K+
Sbjct: 583 VNVIQVPKEDHIVSVIPVSNFDEAGKS--LVFVSRKGQVKRTDLKEYVTKRSGAVAAAKV 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            + D I+ V       DI+L +K G  +RF    +     R S GVRGI L  GD+V++ 
Sbjct: 641 AAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMG-RVSGGVRGIQLRDGDEVVAA 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V + + +                                                   
Sbjct: 700 LWVENDEGE--------------------------------------------------- 708

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQII 854
            ILT+++ G+GKR+   D+   +R GKG+   +  +   +     A+V  F   +  QI 
Sbjct: 709 -ILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQIN 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             S+ G    +   ++ I  R + G ++    K+ ++V +  +  +E+  E
Sbjct: 768 AYSEDGQAFPIHTEKVPIMERKSIGKLLADVGKNGQIVDLVSLPHAELGKE 818


>gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1]
 gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1]
          Length = 810

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 303/889 (34%), Positives = 494/889 (55%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQ++SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + D+  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L             
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERL------------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    + +EL  L   IK+  DI
Sbjct: 412 -------------VLNFGLSEIQANSVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +L+L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELLNLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD ++ +  V            Y+  +S        +  +I+ LK  +         
Sbjct: 695 LKEGDLLVKVLAVREN--------PYLLIVSENGYGKRLNMSKISELKRGA--------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGALVAVFPV 847
                                  T    ++ S  ++G  + A  VS+ +EI         
Sbjct: 738 -----------------------TGYTSYKKSDKKAGSVVDAIAVSEDDEI--------- 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                 +LVS +   +R    ++    +  +G+ +      + +VSV +
Sbjct: 766 ------LLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDS-DSLVSVSK 807



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 87/216 (40%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQEEILTIKNSKDLTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + + +V V  +RE+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLLVKVLAVREN 710



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri]
          Length = 821

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 332/894 (37%), Positives = 509/894 (56%), Gaps = 87/894 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +   + +  I  + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M  + + 
Sbjct: 6   NDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMT 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           + K++ K ARI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R  LI+G GNFGS+DGDPPA
Sbjct: 66  YEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPA 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  ++ D+ K+T  F  NYDGS +EP  L   +PN+LVNG  GIAVGM
Sbjct: 126 AMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGM 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV+DG +AV  NP+I    LM+II+GPDFPTGA+I    G+  AY TG G
Sbjct: 186 ATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAGNGLIKAYETGNG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +I IR    IE  + ++ +I+V+EIPYQ+NKA +LE+IAELVR+K I  I DLRDES+ +
Sbjct: 246 AITIRSKIDIE-ENNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNME 304

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+ELKR A  +VILN+LY+ T LQ+ FS+N++AL   +P    L  ILK F+  + 
Sbjct: 305 GVRVVLELKRDAQENVILNKLYKLTPLQTNFSLNILALYKNQPRVMGLKQILKYFIEHQI 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +++++R+++ L K R+R  +L GL IA+ N+DEV+ II+ S   + A   L+ +      
Sbjct: 365 DIIIKRSQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINK------ 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L   Q RAILE+RL RLTGL  + I NE+  + + I E
Sbjct: 419 --------------------FNLVGEQARAILEMRLQRLTGLEIEKINNEIKDIKVAITE 458

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             +I+++  + + I+  EL  +K +    RR++I+ E L +++ E+ I RED ++ ++  
Sbjct: 459 LEEIINNSEKQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRREDTLIMLTQD 518

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKRV    ++ Q RGGKG  G+    ED +  +   ++  S+L FS+ G VYK + + 
Sbjct: 519 GYVKRVSDDTFKLQNRGGKGIIGLA-NIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYN 577

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +   S  ARG  +IN++++++ E I TI+                               
Sbjct: 578 IETYSRHARGLPIINLIAIDKTESIQTIIAV----------------------------- 608

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                           DE +S      E+++   TK G   +  IS           G  
Sbjct: 609 ----------------DESIST-----EDNLFFVTKKGLIKKTKISEFNQI---RQTGKV 644

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I L   D+++S+ I    D D        K +    + I   T +   +K         
Sbjct: 645 AIELKDNDELVSVIITKGYD-DVIIGNNIGKVIRFNEKEIRPMTRQSVGVKG--IANDAT 701

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E          +++L+V+E G+ K+T   D+R++ R+ KG+++ +++  ++ G L  V 
Sbjct: 702 GETIGVSSGRSAKYVLSVTENGYAKKTIIKDYRLTGRNTKGVKSINLT--DKTGYLKFVQ 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V+ ++ I++ + KG +IRV + +I +  R T GV I    +D+++  +E +++
Sbjct: 760 TVDGDEDILVGTKKGNIIRVSLEQIPLFGRTTSGVKIMRLEQDDKLEVIEILKK 813



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 108/238 (45%), Gaps = 17/238 (7%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           +T  ++ ++ +++      ED +  V+  G +K+  +S +   R+ GK    + ++D D 
Sbjct: 598 KTESIQTIIAVDESIST--EDNLFFVTKKGLIKKTKISEFNQIRQTGK--VAIELKDNDE 653

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  + I   +  V+  +++G V +     +   + Q+ G  +  I +   GE I      
Sbjct: 654 LVSVIITKGYDDVIIGNNIGKVIRFNEKEIRPMTRQSVG--VKGIANDATGETIGV---- 707

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQE 693
               S  +  YV+  T++G  ++  + D+    R+ K    ++  D+   +  V+T   +
Sbjct: 708 ---SSGRSAKYVLSVTENGYAKKTIIKDYRLTGRNTKGVKSINLTDKTGYLKFVQTVDGD 764

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            DIL+ TK G  +R  +  I +F  R + GV+ + L + D++  + I+        ER
Sbjct: 765 EDILVGTKKGNIIRVSLEQIPLFG-RTTSGVKIMRLEQDDKLEVIEILKKKINIEGER 821


>gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
 gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
          Length = 819

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 301/891 (33%), Positives = 483/891 (54%), Gaps = 90/891 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K A+  G+
Sbjct: 12  LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE RL   A 
Sbjct: 72  VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAM 131

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP HNL EV+D
Sbjct: 132 ELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVID 191

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            C+AV+  P+I+LD +M  I+GPDFPTG +I+G  GI +AY TG+G + +R  + IE   
Sbjct: 192 ACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRSKTDIESLR 251

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
           G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+ELK+ A A
Sbjct: 252 GGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADA 311

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + IL  L++ T LQ  ++ NMVA+    P++  L  +L A++  + EVV  RT++ L KA
Sbjct: 312 NGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIHHQREVVTHRTQFELEKA 371

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            DRAHVL GL  A+  LDEV+  I+ S N + A+  L                       
Sbjct: 372 EDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL----------------------- 408

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                    +E Q  +IL L+L RLT L    ++ EL+ L  +I+    IL S  +L+G+
Sbjct: 409 ---QWMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGV 465

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPLSVYRA 558
           I++EL+ ++++    RR+ I E + +++      +  ED++VT+S+ GY+KR  +  +  
Sbjct: 466 IRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSF-- 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R G       +++ D++T LF V+T  ++L F+S G  +   V ++P    +  G A+
Sbjct: 524 -TRSGGELESSGVKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAI 582

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N++ + + + I +++P    + +  +  +VF ++ G V+R  L +++        A K+
Sbjct: 583 VNVIQVPKEDHIVSVIPVSNFDEAGKS--LVFVSRKGQVKRTDLKEYVTKRSGAVAAAKV 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            + D I+ V       DI+L +K G  +RF    +     R S GVRGI L  GD+V++ 
Sbjct: 641 AAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAMG-RVSGGVRGIQLRDGDEVVAA 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V + + +                                                   
Sbjct: 700 LWVENDEGE--------------------------------------------------- 708

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQII 854
            ILT+++ G+GKR+   D+   +R GKG+   +  +   +     A+V  F   +  QI 
Sbjct: 709 -ILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQIN 767

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             S+ G    +   ++ IA R + G ++    K+ ++V +  +  +E   E
Sbjct: 768 AYSEDGQAFPIHTEKVPIAERKSIGKLLADVGKNGQIVDLVSLPHAESGKE 818


>gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a]
          Length = 810

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 306/889 (34%), Positives = 497/889 (55%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+ +L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVSN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V        +   Y+  +S        +  +I+ LK  +         
Sbjct: 695 LKEGDLFVKVLSV--------KENPYLLIVSENGYGKRLNMSKISELKRGA--------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGALVAVFPV 847
                                  T    ++ S  ++G  + A  VS+ +E          
Sbjct: 738 -----------------------TGYTSYKKSDKKAGSVVDAIAVSEDDE---------- 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 765 -----ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 109/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           + + L++ DE++          I+ ++KL +  +  + +    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVI---------KIIKSSKLAKDAKEKLVSNFGLSEIQANSVLDMRLQKLT 434

Query: 733 -------DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                  ++ +++ + L  D +             +   I+   +     +     +  +
Sbjct: 435 ALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V   
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     ++
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKDL 609

Query: 903 VDEA 906
            D+A
Sbjct: 610 TDDA 613



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
 gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
          Length = 810

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 306/889 (34%), Positives = 496/889 (55%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V        +   Y+  +S        +  +I+ LK  +         
Sbjct: 695 LKEGDLFVKVLSV--------KENPYLLIVSENGYGKRLNMSKISELKRGA--------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGALVAVFPV 847
                                  T    ++ S  ++G  + A  VS+ +E          
Sbjct: 738 -----------------------TGYTSYKKSDKKAGSVVDAIAVSEDDE---------- 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 765 -----ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 109/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           + + L++ DE++          I+ ++KL +  +  + +    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVI---------KIIKSSKLAKDAKERLVSNFGLSEIQANSVLDMRLQKLT 434

Query: 733 -------DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                  ++ +++ + L  D +             +   I+   +     +     +  +
Sbjct: 435 ALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V   
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     ++
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKDL 609

Query: 903 VDEA 906
            D+A
Sbjct: 610 TDDA 613



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
 gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
          Length = 868

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 312/939 (33%), Positives = 464/939 (49%), Gaps = 145/939 (15%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 12  VISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ ++YDAL RM Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 72  RVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               H  +   +G+ TVDF  N+D S QEP VL A  P +L+NG  GIAVGMATNIP HN
Sbjct: 132 ASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIAVGMATNIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDG +A+ID PD+  + L+ +I GPDFPTG  I+   GI +AY  G+GSI +RGV+
Sbjct: 192 LNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEIISTEGITDAYTKGKGSIAVRGVT 251

Query: 255 HIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E+      +  +  IVVTE P+QVNKA  +EK+AELV + RI  I+DLRDESDR+G R
Sbjct: 252 RMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGISDLRDESDREGIR 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+KR  S   +L++LY  T LQ  F   ++AL   +P + TL  +L+ F+ FRE  +
Sbjct: 312 VVIEIKREFSPQTVLSRLYHQTDLQCNFGAILLALVNGQPRQLTLRQMLQEFLNFREVTL 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR  + L  A  R H++ GL + + NLD  + I+R +P+  TA++ L  R         
Sbjct: 372 TRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQGLQSR--------- 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            +  SE Q  AIL + + RLTGL R +++ E + L   I+E   
Sbjct: 423 -----------------LNFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQR 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---------------------------- 521
           +L  R  LL  +K+EL S+K +   PRRTR+V                            
Sbjct: 466 LLGDRRELLKALKKELRSLKRKYGDPRRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGR 525

Query: 522 ----------------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
                              L +        E  V+  +H  YV+R+  +     +   K 
Sbjct: 526 GSRGAGEQRGGEGKKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKS 585

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                  + DF  +     T+ ++   +  G  Y  K+  +P    + RG  +I++LS +
Sbjct: 586 AQSRG-GESDFSVNTIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTPIISLLSPS 644

Query: 626 QG---------ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
                      E +  +    E+  + +   +V  T+ G ++R  LS+   I   G  A+
Sbjct: 645 ATKDVAPGNLPEIVAGMFVLSENADATD---LVTLTQQGKIKRLPLSELSDITNRGVTAV 701

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQV 735
           KL   DE+           ++L T  G+ +RF ++  +    GR + G +   L K +Q+
Sbjct: 702 KLKDDDELRYAMLSKPGEQVVLATSGGRLLRFELNDEQLPPMGRAAQGSQATRLRKQEQL 761

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +    +    +                                                 
Sbjct: 762 VGCITLAADGS------------------------------------------------- 772

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +L VSE G+ KR      R++ R   G +A   ++     ALV +       ++ L
Sbjct: 773 ----LLLVSELGWAKRMPVGSVRLTGRGEIGTQAFHFAE--PKDALVGIVAALPRKELKL 826

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +++ G L+RV V +I    +   G    +    E++V V
Sbjct: 827 LTNNGRLLRVGVEKIAFWGKDAPGDRAVNLNPSEKIVKV 865


>gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A
 gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1]
          Length = 810

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 307/889 (34%), Positives = 496/889 (55%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V        +   Y+  +S        +  +I+ LK  +         
Sbjct: 695 LKEGDLFVKVLSV--------KENPYLLIVSENGYGKRLNMSKISELKRGA--------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGALVAVFPV 847
                                  T    ++ S  ++G  + A  VS+ +E          
Sbjct: 738 -----------------------TGYTSYKKSDKKAGSVVDAIAVSEDDE---------- 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 765 -----ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 109/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           + + L++ DE++          I+ ++KL +  R  + +    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVI---------KIIKSSKLAKDARERLVSNFGLSEIQANSVLDMRLQKLT 434

Query: 733 -------DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                  ++ +++ + L  D +             +   I+   +     +     +  +
Sbjct: 435 ALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V   
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     ++
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKDL 609

Query: 903 VDEA 906
            D+A
Sbjct: 610 TDDA 613



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40]
          Length = 810

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 305/889 (34%), Positives = 496/889 (55%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DE+++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVSN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V        +   Y+  +S        +  +I+ LK  +         
Sbjct: 695 LKEGDLFVKVLSV--------KENPYLLIVSENGYGKRLNMSKISELKRGA--------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGALVAVFPV 847
                                  T    ++ S  ++G  + A  VS+ +E          
Sbjct: 738 -----------------------TGYTSYKKSDKKAGSVVDAIAVSEDDE---------- 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 765 -----ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 70/128 (54%), Gaps = 8/128 (6%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---I 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V    VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--N 605

Query: 899 ESEIVDEA 906
             ++ D+A
Sbjct: 606 SKDLTDDA 613



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
 gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
          Length = 810

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 305/889 (34%), Positives = 496/889 (55%), Gaps = 89/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +  LSE+Q  ++L++RL +LT L    +  E N L   IK+  DI
Sbjct: 414 ---------------SFGLSEIQANSVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V        +   Y+  +S        +  +I+ LK  +         
Sbjct: 695 LKEGDLFVKVLSV--------KENPYLLIVSENGYGKRLNMSKISELKRGA--------- 737

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGALVAVFPV 847
                                  T    ++ S  ++G  + A  VS+ +E          
Sbjct: 738 -----------------------TGYTSYKKSDKKAGSVVDAIAVSEDDE---------- 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 765 -----ILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 105/239 (43%), Gaps = 16/239 (6%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
                +D   +I+      ++    L +  G       +++     +    +    L + 
Sbjct: 386 IALNNIDEVIKIIKSSKLAKDAKERLVSSFG-LSEIQANSVLDMRLQKLTALEIFKLEEE 444

Query: 733 DQVISMAIVLHADA--DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             ++   I  + D   +    I  ++  +    L  GD      + ++  ++ ++S+   
Sbjct: 445 FNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSD--- 501

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V    VN +
Sbjct: 502 --LMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIALCVNTH 556

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
           D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     ++ D+A
Sbjct: 557 DYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKDLTDDA 613



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVFKDEKV 663


>gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04]
 gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04]
          Length = 810

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 302/888 (34%), Positives = 493/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A LV+E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKEFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                          +   +   +N      +IS+ 
Sbjct: 695 LKEGDLFVKVLAIRE------------------------NPYLLIISENGYGKRLSISKI 730

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +           S+K               ++G  + A  VS+ +EI          
Sbjct: 731 SELKRGATGYTSYKKSDK---------------KAGSVVDAIAVSEDDEI---------- 765

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                +LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 766 -----LLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 108/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + L++ DE+++         I+ +++L +  R  + A    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVIN---------IIKSSRLAKDARERLVANFGLSEIQANSVLDMKLQKLT 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNISEER- 789
            +    +    +        Y   +    R+I+   EE  +L     D      I +E  
Sbjct: 435 ALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 790 ----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +    
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---VAIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     E 
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKEF 609

Query: 903 VDEA 906
            D++
Sbjct: 610 TDDS 613



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+V     V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEVAIALCVNTHDYLF 560

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSYLLLTTA 620

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 621 SGKIARFESTDFKTVKSRGVIVI------KLNDKDFVTSAEIVLKDEKVICLSKKGSAFI 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  IRE+
Sbjct: 675 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIREN 710



 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +       D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKTVK--SRGVIVIKLNDKDFVTSAEIVLKDEKV 663


>gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
 gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
          Length = 795

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 327/888 (36%), Positives = 504/888 (56%), Gaps = 103/888 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ ITSV I ++M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+   ++G+  NK + 
Sbjct: 3   EQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKPHK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG+AA+YDA+ RMAQ +S R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 63  KSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+T++F  N+DGS QEP VL +R PN+LVNG  GIAVGM+T+IP 
Sbjct: 123 ARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+   + ++++ D+ ++ LME I GPDFPTG  I+G   IK AY TG+G I +RG
Sbjct: 183 HNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKIIGNDEIKKAYRTGKGRITLRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK S + E+IV+TEIPYQ+NKA ++E+IA  +++ ++ ++ ++RDESD+ G R+VI
Sbjct: 243 KTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK  A+ ++ILN+LY+YTSLQ+   +NM+AL   +PE   L  IL+ F+ FR EVV RR
Sbjct: 303 ELKSKANTEIILNRLYKYTSLQTTQRINMLALVDQQPEVMDLKTILQHFLDFRREVVTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K++DR H+L+GL  A+ NLD+V+ IIR S  P TA++ L  +            
Sbjct: 363 TEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDK------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         + +S+ Q  AIL+++L RL  L R  I  EL  L  +I+    IL+
Sbjct: 411 --------------LNVSKKQAAAILDMKLQRLVSLERKKITEELTELKEKIEALNSILN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            +  +  +IK+EL+ +K+E    R+T I+  E   ++++ D I  ED+V++ S+  Y+KR
Sbjct: 457 EKEVMDDLIKKELIEIKEEYGDERKTEIITDESKAELDESDLIKNEDIVLSFSYNKYLKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                     R GKG         D++TD+   +T   +LFF++ G V+  K  ++P   
Sbjct: 517 T---TDIENIRAGKG---------DYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHH 564

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             + G  L + L L   E I  I+   ++       Y+  AT+ G +++    ++     
Sbjct: 565 GLSTGDPLSDYLKLPLDEEIVDILILTDE---TKEKYITIATEEGLIKKTVGKEYETTVS 621

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           S   A+ L+  DE++  +    + ++LL TK GQ + F         GRN+ G +GI LA
Sbjct: 622 S-IKAINLNEEDEVIGAKVTDGQQNLLLGTKGGQTIHFSE-DSISDTGRNTKGSKGIDLA 679

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VIS  +  ++                                              
Sbjct: 680 ENDKVISFNLTANS---------------------------------------------- 693

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   +++T +  G   RT    ++I NR+GKG++       N+   ++ +   +  
Sbjct: 694 -------NYVITATADGRATRTDINAYQIQNRNGKGLKTL----TNDSYEVIDIITASKE 742

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D+++ V+++G L   PV+EI    R  +    F    D+++  V R+ 
Sbjct: 743 DKLLFVTEEGQLEEAPVSEITETERVGRMYTQFKLD-DDKIKEVIRLP 789


>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
          Length = 1031

 Score =  603 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 302/846 (35%), Positives = 467/846 (55%), Gaps = 54/846 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +V +  E++ S++ YA+++ILGRA+PD+RDGLKPVHRRIL+ M  + +     + K
Sbjct: 163 DQVVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRK 222

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEV+GKYHPHG+ A+YDAL RMAQD+ +   LI+G GNFGS+D DP AA RYTEC
Sbjct: 223 CARVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTEC 282

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L   A    L D+  DTVD   N+DG+ +EPVVL +R P +L+NG  GIAVGMATNIP 
Sbjct: 283 KLSSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATGIAVGMATNIPP 342

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV   +A+I NP I  D L  ++  PDFPTG  I+G  G +  Y T  G + +R 
Sbjct: 343 HNLGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRIMGLAGARKLYTTSNGGVTLRA 402

Query: 253 VSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +HIE         R  +VVTE+PYQVNK+++L+++AE+V +K++  I+DLRDESDR G 
Sbjct: 403 TTHIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGISDLRDESDRDGV 462

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFRE 366
           RVV+ELKR A+  V+ N L++ T LQ+ FS NM+AL  +G KP RF+L   +++FV FR 
Sbjct: 463 RVVVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLRAAIQSFVDFRF 522

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RRT + L K R R H++ G+  A+  +D V+ ++R S +   AR  LM        
Sbjct: 523 TTVRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARDGLMAE------ 576

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AIL LRL RLT +    ++ E   L   ++ 
Sbjct: 577 -------------------PYGLSQEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMER 617

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +++  S+++ II +EL   K++   PRRT I     ++ +ED +  ++ VV V+  G
Sbjct: 618 LEGVMNEDSKVMDIIVEELTEAKNKHAVPRRTMIKPDEGELHEEDLLANDNSVVVVTAAG 677

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           Y+KR+PL  + AQ RG +G++G  M  D D V   F    H ++LF S  G  Y  + ++
Sbjct: 678 YIKRMPLEEFTAQNRGTRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQ 737

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+GS  A+G  +  +L +   E+I +++   +      + Y+V  T+ G ++R  L+ F
Sbjct: 738 VPVGSRTAKGVPVPQVLPIAGDEQIASVLAVDDFRE---DEYLVLLTQKGYIKRTPLAAF 794

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGV 724
              +  G I + L   D +  V+ C  EN I++ +K G   RF  +   +  +GR S GV
Sbjct: 795 KSTSSRGLIIISLGEDDTLRWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRGV 854

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +             ++++     Y +R+   +  + +R        ++     D+     
Sbjct: 855 KE---------EGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQKLEDTLA--- 902

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                C  +   +  I+  + +G   R  +      +R+  G+    +   + I  +  V
Sbjct: 903 -----CFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVALV 957

Query: 845 FPVNDN 850
             ++++
Sbjct: 958 PEISED 963


>gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr]
 gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr]
          Length = 810

 Score =  603 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 303/888 (34%), Positives = 491/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A LV+E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKELTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEVVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                                        E      
Sbjct: 695 LKEGDLFVKVLAI---------------------------------------KENPYLLI 715

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +    K   I  +SE   G    +   +   ++G  + A  VS+ +EI          
Sbjct: 716 ISENGYGKRLSISKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEI---------- 765

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                +LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 766 -----LLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 109/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + L++ DE+++         I+ +++L +  R  + A    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVIN---------IIKSSRLAKDARERLVANFGLSEIQANSVLDMKLQKLT 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNISEER- 789
            +    +    +        Y   +    R+I+   EE  +L     D      I +E  
Sbjct: 435 ALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 790 ----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +    
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---VAIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     E+
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKEL 609

Query: 903 VDEA 906
            D++
Sbjct: 610 TDDS 613



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 89/217 (41%), Gaps = 13/217 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+V     V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEVAIALCVNTHDYLF 560

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               + ++  +     +    +   + I+ L N    E  ++ +  +EL      +LT +
Sbjct: 561 MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKELTDDSYLLLT-T 619

Query: 805 EKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
             G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+  
Sbjct: 620 ASGKIARFESTDFKTVKSRGVIVI------KLNDKDFVTSAEVVLKDEKVICLSKKGSAF 673

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                ++R+ +R T+GV      + +  V V  I+E+
Sbjct: 674 IFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIKEN 710



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKELTDDSYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKTVK--SRGVIVIKLNDKDFVTSAEVVLKDEKV 663


>gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13]
          Length = 814

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 301/895 (33%), Positives = 470/895 (52%), Gaps = 90/895 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QTEKFHDLPLEEVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K TV+F PN+D + QEPVVL A YPN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSPIASELLRDLDKKTVEFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  IDNP + +D LM +++GPDFPTG +I G  GIK AY TG+G I++R
Sbjct: 183 PHHLGEVIDATIMRIDNPSVTVDELMTVVKGPDFPTGGIIQGVEGIKKAYETGKGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G++ +E   G ++QIV+TE+PY+VNKA +++KI EL  +K++  I+++RDE+DR G RVV
Sbjct: 243 GLAEVEDIRGGKQQIVITEVPYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+ ILN LY+ T LQ  F+ NMVA+   +P    L   L A++  ++EV+  
Sbjct: 303 IELKKEADANGILNYLYKNTDLQITFNFNMVAIYKKRPTLMGLPHFLDAYIDHQKEVISN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ LN+A++R HV+ GL  A++ LDEV+  IR S +   A+  L+ +           
Sbjct: 363 RSRFELNRAKERQHVVEGLMKALSILDEVIATIRASKDKRHAKDNLIAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  ++ E   IL
Sbjct: 412 ---------------FTFTEPQAEAIVSLQLYRLTNTDITALQAEADELAKKVAELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVK 549
            S  +L  +IK +L  VK      RR++I + + +++      I  ED++VTV+  GYVK
Sbjct: 457 GSEKKLFSVIKSDLKRVKKLYTNGRRSKIQDQIEEIKINLEVMIPSEDVIVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  + A      G     M++ D +     ++T  ++L F++ G      V  LP  
Sbjct: 517 RTSLRSFSASNGQDFG-----MKETDRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+ +++ E I   +P    E   +  +++F T++G V++ +LS +    
Sbjct: 572 RWKDMGQHVANIVPIDRDESIIKAIPVSNFE---DPNFLLFVTRNGMVKKTELSAYKAQR 628

Query: 670 RSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+ L   D+++ V       DI L T+ G  + F    I V   R + GV+GI+
Sbjct: 629 YSKPLMAVNLKGDDQVVDVHLTDGAQDIFLATRSGYGLWFTEEEINVVGAR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+S  +                                                
Sbjct: 688 LKDSDYVVSGLVFK---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                K  +  +   + +G  K+    +F  + R+ +G+      K N    + AV  V 
Sbjct: 702 -----KESKAMLFIATHRGAVKKLKITEFDKATRAKRGLVMLREVKNNPH-QIAAVELVE 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +  I + + KGT+ ++     R   R + G  +    +   VV +    E E+ 
Sbjct: 756 PSSFIYVQTVKGTVEKLAAASYRNNDRYSNGSFVLDQQEAGDVVEMWVETEVEVE 810


>gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
 gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
          Length = 803

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 305/890 (34%), Positives = 477/890 (53%), Gaps = 102/890 (11%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRRI++ M ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL-LDDLGKDTVD 152
           YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL +  H   L ++ + TVD
Sbjct: 61  YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+D S QEP+VL A+ PN+++NG  GIAVGMATNIP HNLGEVVDG +A++D P++ 
Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-----REQIV 267
            ++L ++I GPDFPTGA I+   GI +AY TGRGSI IRG+++ E+         R+ IV
Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTKGIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAIV 240

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA+ + KIA LV + RI  I+D+RDESDR+G RVVIELKR A   +ILN L
Sbjct: 241 VTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILNDL 300

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+LQ+ F   M+A+   +P + +L  IL+AF+ FRE  ++R+  + L + R+R H++
Sbjct: 301 YKMTALQTNFGALMLAIEDGQPRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFHIV 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA+ +LD+++ I+R +P+  TA+ E+++                            
Sbjct: 361 EGLLIALDSLDDIIDILRNAPDGTTAKVEMIE--------------------------AF 394

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LS+ Q  +IL + L RLTGL +  +R+E + L   I +   ++S R+ L+  +K+EL +
Sbjct: 395 DLSDRQADSILAMPLRRLTGLEQQKLRDESDELDERINQLETLVSDRNVLMKSLKKELRA 454

Query: 508 VKDELDTPRRTRIVEGLLDMEDED-------CIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K +    RRTRI      +++E            E+ ++  +  GYV+R      R +R
Sbjct: 455 LKKKFGDRRRTRIQTEAERVKEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKT-RTRR 513

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           +   G +  +   +D      I +    VL  +  G  +   V  +PI   Q++G  LI 
Sbjct: 514 KDASGPTKALEEFDDVTIQTEITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIG 573

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L    G    +++       +     ++  T  G V+R   S+   +   G  A+KL  
Sbjct: 574 LLPDAVGSTPDSVVTQIVLSEARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKD 633

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            D +         +D++L +  G+ +RF I         R + G +GI L K ++++   
Sbjct: 634 DDLLKHAFIAPMGSDLVLASSGGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSERLVGCI 693

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            V   D                                                      
Sbjct: 694 PVSPKD-----------------------------------------------------T 700

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ VS KG+GKR     F+ SNR G G ++   +   +  ALV++        + +++D+
Sbjct: 701 LILVSNKGYGKRILVSTFKTSNRGGIGSQSFKFNL--KSDALVSLNVAVPEANLTVLTDQ 758

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           G   ++ ++ + +  R+     + +  + E +V      E+ + D  ES 
Sbjct: 759 GRAAKIAIDSVPLQGRSQPCARLVTPERTETIV------ETLVTDMPESE 802


>gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
 gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
          Length = 843

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 300/908 (33%), Positives = 481/908 (52%), Gaps = 98/908 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I   S++ E++ S+L YA++VI  RA+PDL+DGLKPVHRRI++   Q  +  + K+
Sbjct: 18  EKDTIFDKSLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQEKLLNSAKF 77

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G VMG YHPHG+++IY+AL RMAQD+SLR  LIEGQGNFGS+DGD PAA RYT
Sbjct: 78  KKSAALVGTVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDGDSPAAMRYT 137

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K   + LD + ++ VDF  NYD S +EPVVL    PN+L+NG  GIAVG+ATNIP
Sbjct: 138 EARLSKLGEYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGIAVGLATNIP 197

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++  + +I NP+     L++ I GPDFPTG  I   +G+++ ++TG G  ++R
Sbjct: 198 PHNIREVLNAVLDLIKNPNFSELDLLQYITGPDFPTGGEIFRYSGVRDYFSTGSGKFILR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR---------IVDIADLRDE 302
               +E+    +  +++ EIPY V K  ++E I +L++  +           +I ++RDE
Sbjct: 258 SKIEVEEQVK-KNLLIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLADNIVEIRDE 316

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+ +G R+VIE +    A VI+N LY++T LQ+ +SVN+  L   KPER +L+ +LK ++
Sbjct: 317 SNLEGIRLVIECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGKPERISLLQLLKLYL 376

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + E++ RRT + L   + R H+L G     +++ E +++I  S NPE           
Sbjct: 377 EHQLEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEE---------- 426

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q   I  L +  L  +    ++ EL +   
Sbjct: 427 -------------------DLRARYSLSDEQLDDIFRLTVGSLKKISISKLQEELVTKTD 467

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVT 541
                  IL+S  +L  +  ++L+ ++D+    RRTR+ +E    ++  +    +  V++
Sbjct: 468 LSIFKESILNSDDKLREVFSEKLIELRDKFGDDRRTRVNMEASGAIDYCELFHFQKTVIS 527

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY+ + PLS Y+  +RGG G+ G     +D      +      VLFFS  G VYK+
Sbjct: 528 LSHRGYLSQRPLSTYKLHKRGGSGKEGAFHYKDDKPKMFLVCHGKDDVLFFSDSGKVYKK 587

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           K + + +   + +     N+L  L++GE+I TI+  PE  S  +N Y++FAT  G V+R 
Sbjct: 588 KAYEMNLREGKNKATITYNVLPGLSKGEKIVTIIALPEG-SYGDNKYLLFATSKGLVKRC 646

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +S F +IN++GK+A+ L   D +  V T   ++ + L +  G+ V+F  S IR  + R 
Sbjct: 647 SMSLFEKINKNGKVAITLRDGDSLKFVITLENDSHVCLASDSGRMVKFLASEIRP-SSRI 705

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI++  G ++IS +     D                                   
Sbjct: 706 ASGVFGINVGSG-ELISASSTYEGD----------------------------------- 729

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++L++SE G GK T   ++ +  R GK +         + G 
Sbjct: 730 ------------------YVLSISELGKGKLTPVSEYSLVKR-GKKVGLIAQKTTEKTGK 770

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++A   V ++D+I+L++++    R  V++I +  R+T GV +F     ERV+   +  E 
Sbjct: 771 VLACTIVRESDEILLLTNQNRQNRFRVSDISVQGRSTSGVNLFKLENKERVIYFAKNFEQ 830

Query: 901 EIVDEAES 908
           E  D+ E 
Sbjct: 831 EESDDLED 838


>gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
          Length = 786

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 299/812 (36%), Positives = 453/812 (55%), Gaps = 46/812 (5%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I++E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  N+ Y K ARI G
Sbjct: 6   DISEELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG++A+YDAL RMAQD+ +R  L++GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 66  EVLGKYHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+GK+TVDF PN+D + +EPVVL ++ PN+L+NG  GIAVGMATN+P HNL EV 
Sbjct: 126 EEMLADIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVC 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +G +A I NP+I ++ LM+ ++GPDFPTG VI+G  GIK AY TGRG I +RG   +E  
Sbjct: 186 EGIIAYIQNPEISVEELMKYVKGPDFPTGGVIVGVDGIKEAYLTGRGKITVRGKVEVE-- 243

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              +  I++ E+PY VNKA ++E IAEL ++ RI +I  +RDESDR+G RVVIELK G++
Sbjct: 244 ---KNAIIIREVPYMVNKAKLVESIAELAKD-RIDEIRTIRDESDREGIRVVIELKSGSN 299

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            + ++ +LY Y++LQ+ F +  +AL   +P    L  ++  FV  R E++ RRT Y L K
Sbjct: 300 PETVIKKLYAYSNLQTTFGIINLALVDNEPRILNLKELIALFVDHRREIIRRRTTYDLEK 359

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A++R H++ GL + V ++D  + +I+ S +P  A+ +L++                    
Sbjct: 360 AQERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIE-------------------- 399

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                 T  LSE Q  A+L++RL +LT +  D +  E  SL  +I E   IL+S  ++  
Sbjct: 400 ------TYSLSEKQADAVLQMRLQKLTAMEIDALLKEYESLKEKIAEYESILASPEKIDA 453

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II  E+  ++++    RRT I+  + ++   D I  E+  V ++  GY KR+ L  +R Q
Sbjct: 454 IIADEVREIREKYGDERRTEIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQ 513

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGG G  G  +   D +    I ++   +L F++ G  +    + +P     ARG  L 
Sbjct: 514 SRGGVGVIGASVSPGDEIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLK 573

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            ++ L  GE++ + +   +     N    V  +  G +++  L +F    R+G  A    
Sbjct: 574 RLIRLENGEKVVSALGVKDF----NGKIAVILSPDGYIKKVPLIEFENAKRAGVKASA-- 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              EI  VE   + + I + T  G  VR   + +  +  RN+ GV  + L  GD++  M+
Sbjct: 628 --GEIQQVELL-EGDSIFIATANGNVVRLRETDVPEYG-RNAKGVIAVRLRDGDRIAWMS 683

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                         Y K          G           S   G ++           + 
Sbjct: 684 ASEGEYLLMLTERGYGKRCDVNEFRFIGRGSMGMIGYRISEKTGKLAFISA----CNGEE 739

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +  +SE G+  R  S    +  R   G+    
Sbjct: 740 VFIMSEDGYCIRIDSSTIPVQGRYSSGVVVAR 771



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 122/318 (38%), Gaps = 52/318 (16%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEIL 685
           E I  +      +        V  T  G  +R  L +F   +R G   I   +   DEI 
Sbjct: 473 EIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPGDEIA 532

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVIS----- 737
               C   + +L+ T  G+        I     R + G    R I L  G++V+S     
Sbjct: 533 VFRICNSTDRLLIFTNTGRAFWINAYEI-PKMDRTARGTTLKRLIRLENGEKVVSALGVK 591

Query: 738 -----MAIVLHADADYDERI--CYMKHMSAQRRLISGDTEEITSLKNDSS---------- 780
                +A++L  D    +     +     A  +  +G+ +++  L+ DS           
Sbjct: 592 DFNGKIAVILSPDGYIKKVPLIEFENAKRAGVKASAGEIQQVELLEGDSIFIATANGNVV 651

Query: 781 ------------------VEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISN 821
                                    +R   +   E +++L ++E+G+GKR    +FR   
Sbjct: 652 RLRETDVPEYGRNAKGVIAVRLRDGDRIAWMSASEGEYLLMLTERGYGKRCDVNEFRFIG 711

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R   G+    +S+  + G L  +   N  +++ ++S+ G  IR+  + I +  R + GVV
Sbjct: 712 RGSMGMIGYRISE--KTGKLAFISACN-GEEVFIMSEDGYCIRIDSSTIPVQGRYSSGVV 768

Query: 882 IFSTAKDERVVSVERIRE 899
           +    K  + V+++++R+
Sbjct: 769 VAR--KGVKRVALKKVRK 784



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 85/202 (42%), Gaps = 12/202 (5%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +      + + +  V  + L K   +   A++   ++  ++   Y   +++  ++ +
Sbjct: 394 KGKLIETYSLSEKQADAVLQMRLQKLTAMEIDALLKEYESLKEKIAEYESILASPEKIDA 453

Query: 767 GDTEEITSLKNDSSVE------GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
              +E+  ++     E      G + E    +L  +E+  + ++ +G+ KR S  +FR+ 
Sbjct: 454 IIADEVREIREKYGDERRTEIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQ 513

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R G G+    VS  +E   +      N  D++++ ++ G    +   EI    R  +G 
Sbjct: 514 SRGGVGVIGASVSPGDE---IAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGT 570

Query: 881 ---VIFSTAKDERVVSVERIRE 899
               +      E+VVS   +++
Sbjct: 571 TLKRLIRLENGEKVVSALGVKD 592


>gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi]
 gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi]
          Length = 810

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 301/888 (33%), Positives = 490/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+    R  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ V+ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNVIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLVAN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKEFTDDSYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R+   R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                          +   +   +N      +IS+ 
Sbjct: 695 LKEGDLFVKVLAIRE------------------------NPYLLIISENGYGKRLSISKI 730

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +           S+K               ++G  + A  VS+ +EI          
Sbjct: 731 SELKRGATGYTSYKKSDK---------------KAGSVVDAIAVSEDDEI---------- 765

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                +LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 766 -----LLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 108/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + L++ DE+++         I+ +++L +  R  + A    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVIN---------IIKSSRLAKDARERLVANFGLSEIQANSVLDMKLQKLT 434

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNISEER- 789
            +    +    +        Y   +    R+I+   EE  +L     D      I +E  
Sbjct: 435 ALEIFKLEEELNVLLSLIKDYEDILLNPARIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 790 ----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +    
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---VAIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + +VS++G L  +   EI+ +SRA+KG     + +    E +++++     E 
Sbjct: 552 CVNTHDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKEF 609

Query: 903 VDEA 906
            D++
Sbjct: 610 TDDS 613



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 13/217 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+V     V   D   
Sbjct: 502 LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEVAIALCVNTHDYLF 560

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               + ++  +     +    +   + I+ L N    E  ++ +  +E       +LT +
Sbjct: 561 MVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSYLLLT-T 619

Query: 805 EKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
             G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+  
Sbjct: 620 ASGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVLKDEKVICLSKKGSAF 673

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                ++R+ +R T+GV      + +  V V  IRE+
Sbjct: 674 IFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIREN 710



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  VS +G     ++Y+ + S+R+ KG       ++    EI  +       D+  +
Sbjct: 556 HDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L +  G + R    + +     ++GV++      + V S E + + E V
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIVLKDEKV 663


>gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
 gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
          Length = 845

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 317/831 (38%), Positives = 503/831 (60%), Gaps = 20/831 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K ++S+SI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++N  Y K
Sbjct: 6   KEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YDA+ R+AQ +S+R  LI+GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +L+DL K+TVDF PNYDG+ + P V+  + PN+L+NG  GIAVGM TNIP H
Sbjct: 126 RMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRG 252
           N+ EV+D C+A I++ DI  + L++ IRGPDFPT A+I  +   I +AY TG+G+I +R 
Sbjct: 186 NIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQVRA 245

Query: 253 VSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           ++ IE     +R  I++ EIPYQ+NK  ++EKI ELV+E++I  I ++RDESD+ G RVV
Sbjct: 246 LTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR + A+ +LN LY  T LQ+  ++NM+AL   KP    L  I+ +F+ +R+E+V++
Sbjct: 306 IELKRESEANFVLNSLYALTRLQTSININMIALLKGKPTLLNLKKIISSFIDYRKEIVIK 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LN+A+ R   L  + I++ N+D ++ +I+ +  P+ AR  L    W   +    +
Sbjct: 366 RTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETLIEL 425

Query: 432 DLI----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           D             ++            +E Q + IL+L+L +LT L ++ +  E  SL 
Sbjct: 426 DRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYISLT 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI   + IL + +RL+ IIK EL+ +K++    RRT+I+E       ED I ++ ++V 
Sbjct: 486 KEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKRRTKIIEDNSKFNQEDLIKKKKVIVI 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY+K   +S Y  Q+RGGKG+S   ++++DFV  + +  TH ++L  S+ G ++  
Sbjct: 546 LSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENILCVSNFGRIFSI 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  + GK ++N LSL  GE+IT+I      +      Y++ AT  G +++  
Sbjct: 606 KVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFK---KGNYILIATLMGLIKKIS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +    +  +SG I + L+ RDE++++++  + ++I+L T   + +RF  +++R+  GR S
Sbjct: 663 MDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSVRL-TGRKS 721

Query: 722 VGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           +GV G+ + K ++++SM IV    D        Y         L         S+  +  
Sbjct: 722 MGVMGVKIQKDEKLVSMIIVEKDKDILTITENGYGNRTKESEYLKKSRFIRGVSVIKNDE 781

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
             G I      E K +   ++  +  G   R    D  +  R+ KGI    
Sbjct: 782 RNGKIVGAIQVERKDQ---VVIFTNYGILIRILVKDISVFKRNTKGIILIR 829



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 115/331 (34%), Gaps = 13/331 (3%)

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-RGKALINILSLNQGERITTIMPF 636
            D F          F +    +++  +R      Q      L  + +L + +     +  
Sbjct: 425 LDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYISL 484

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            + E +     +  + +   + +N+L       R  +    ++   +    +   ++  I
Sbjct: 485 TK-EITSLVQILQNSNRLMEIIKNELIYIKNQYRDKRRTKIIEDNSKFNQEDLIKKKKVI 543

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERI 752
           ++ +  G      IS   +   R   G     L + D V S+ +    +         RI
Sbjct: 544 VILSNQGYIKFQSISDYDI-QKRGGKGKSSTRLKEKDFVKSVLVTDTHENILCVSNFGRI 602

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +K             + I +  +    E   S    +  K K  +IL  +  G  K+ 
Sbjct: 603 FSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFK-KGNYILIATLMGLIKKI 661

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           S      + +SG  I        N+   ++A+  V    +IIL +     IR   N +R+
Sbjct: 662 SMDFLTKARKSGIIIINL-----NKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSVRL 716

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             R + GV+     KDE++VS+  + + + +
Sbjct: 717 TGRKSMGVMGVKIQKDEKLVSMIIVEKDKDI 747


>gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
 gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
          Length = 814

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 288/836 (34%), Positives = 449/836 (53%), Gaps = 46/836 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID PD  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 183 ALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++ IV+TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 243 AAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R+EVV  R+
Sbjct: 303 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM               
Sbjct: 363 HFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAH------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 410 -------------YGFTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
             +LLG+IK+EL ++K +    RRT I E + +  ++ E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G     M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 517 SYRSYSASNGQDMG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +++ L + + +   +P     +      +VF TK G V+R +L+ +     +
Sbjct: 572 KEVGQHISHLIPLERDDELVAAVPVSSFNTGEQ---LVFVTKQGLVKRTELAQYQVQRYT 628

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   D++++V        + L T  G  + F    I +   R + GV+GI L 
Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEISLVGVR-AAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V +   V   +         +    A +++   + E  +  K    +   +     
Sbjct: 688 EGDFVAAACPVRLEEGSS---FVVVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPH 744

Query: 791 QELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           + +        E+ +   +EKG  +   +   R+S+R   G    D  +   +  +
Sbjct: 745 RVVGAVFVSSDEEMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGPVVDV 800



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 76/218 (34%), Gaps = 15/218 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E+ I+  TK G   R         +   S G + + + + D++++   +   D  
Sbjct: 496 ALIPAEDVIVTVTKEGYVKRTS-----YRSYSASNG-QDMGMKETDRLLAQLEMNTTDVL 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                     Y    +          + I+ L      +  ++          EQ +  V
Sbjct: 550 LLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVAAVPVSSFNTGEQLVF-V 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++G  KRT    +++  R  + + A +V + +    ++AV+  +    + L +  G  +
Sbjct: 609 TKQGLVKRTELAQYQVQ-RYTRPLVAVNVKEDD---DVIAVYATDGCGHLWLATHDGHAL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                EI +      GV      + + V +   +R  E
Sbjct: 665 LFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEE 702


>gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180]
 gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180]
          Length = 1386

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 320/762 (41%), Positives = 440/762 (57%), Gaps = 19/762 (2%)

Query: 103  DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
            D     LL  G     SVDGDPPAA RYTE R+ + A  LLDDL K+TVDF PNYD +  
Sbjct: 615  DHHHNFLLACGVFVHNSVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTEH 674

Query: 163  EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
            EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+D C+A+IDNP + LD LMEI+ G
Sbjct: 675  EPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVPG 734

Query: 223  PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG-DREQIVVTEIPYQVNKAAML 281
            PDFPT  +I G  GI+ AY TGRG  V+R  +  E      RE IV+TEIPYQVNKA +L
Sbjct: 735  PDFPTAGLINGVRGIREAYRTGRGRCVMRARATTETQKRSGREAIVITEIPYQVNKARLL 794

Query: 282  EKIAELVREKRIVDIADL--RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
            E+IAELV+EK+I  IA    RDESD+ G R+VIELKR   ++V+LN LY++T LQ +F +
Sbjct: 795  ERIAELVKEKKIEGIAQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVFGI 854

Query: 340  NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
            NMVAL   +P    L  IL+ F+  R +VV RRT Y L KARDRAHVL G AIA+AN+DE
Sbjct: 855  NMVALVDGQPLTLNLKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALANIDE 914

Query: 400  VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT--------MYLSE 451
            V+  I+ + NP  AR  LM+R W    +  +++                        LSE
Sbjct: 915  VIATIKAAANPAEARERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYRLSE 974

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
             Q +AIL+L+L RLTGL +D I  E   +   I   L ILS   RL+ +I++EL++V+D+
Sbjct: 975  RQAKAILDLQLHRLTGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAVRDQ 1034

Query: 512  LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
                RRT I     D+  ED I  ED VVT+SH GYVK  P+S Y+AQ+RGGKG+S   +
Sbjct: 1035 FGDERRTEIQLDQTDLTLEDLIAPEDRVVTLSHQGYVKTQPISDYQAQKRGGKGKSATAI 1094

Query: 572  RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
            ++EDF+  +F+ ++H +VL FSS G VY  KV+ LP     ARG+ ++N+L L  GERIT
Sbjct: 1095 KEEDFIDRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVNLLPLEAGERIT 1154

Query: 632  TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            T++P  + E   +  +V  AT  G V++  L DF +    G IA+ L   + ++      
Sbjct: 1155 TLLPVRDYE---DGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDLREDELLVGATITG 1211

Query: 692  QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD-YDE 750
             E D++L T  G+ VRF  S +R    R + GVRG+ L +G +VI++             
Sbjct: 1212 GEQDLMLFTSAGKAVRFSESHVRSMG-RAAHGVRGVMLQEGQRVIALVAPEDGGTVLSVT 1270

Query: 751  RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
               Y K     +    G   +     + +   G    +    L      I+ +++ G   
Sbjct: 1271 ENGYGKRTDVDQFPTKGRGTQGVIAIDTAERNGA---QVGAILVHPGDEIMLIADDGTLI 1327

Query: 811  RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            RTS     +  R+ KG++  ++ +   +  +  +  +  + +
Sbjct: 1328 RTSVDQIPVVGRNTKGVKLINLGEGQRLVFVERIAALEGDKE 1369



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/116 (58%), Positives = 89/116 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K +  +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  WN+
Sbjct: 2   PDFAKEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            Y K AR+ G+VMGKYHPHG+AAIYD + RMAQ +SLR LL++GQGNFG   GD  
Sbjct: 62  AYRKSARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGDTA 117



 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 96/251 (38%), Gaps = 22/251 (8%)

Query: 513  DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
               R T ++                 V   +  G VK+ PL  +   R   +G   + +R
Sbjct: 1149 AGERITTLLP-------VRDYEDGSFVFMATSAGTVKKTPLKDF--SRPLSRGIIAIDLR 1199

Query: 573  DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
            +++ +    I      ++ F+S G   +     +      A G   +  + L +G+R+  
Sbjct: 1200 EDELLVGATITGGEQDLMLFTSAGKAVRFSESHVRSMGRAAHG---VRGVMLQEGQRVIA 1256

Query: 633  IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVET 689
            ++  PED        V+  T++G  +R  +  F    R  +  + +D+ +     +    
Sbjct: 1257 LVA-PED-----GGTVLSVTENGYGKRTDVDQFPTKGRGTQGVIAIDTAERNGAQVGAIL 1310

Query: 690  CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                ++I+L    G  +R  +       GRN+ GV+ I+L +G +++ +  +   + D +
Sbjct: 1311 VHPGDEIMLIADDGTLIRTSV-DQIPVVGRNTKGVKLINLGEGQRLVFVERIAALEGDKE 1369

Query: 750  ERICYMKHMSA 760
                  +   A
Sbjct: 1370 TGEEAAEDSEA 1380


>gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
 gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 823

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 308/904 (34%), Positives = 476/904 (52%), Gaps = 85/904 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +I  +         + I + M++S+  YA++VI  RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTE-VIDPEAGASNAPLELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+G+     + K AR+ G+V+GKYHPHG++A YD+  RMAQ W++R  LI+GQGNFGS+
Sbjct: 60  HQLGITHMVAHKKSARVVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K    L  D+ K+TVDFR N+DG+ +EP VL   YPN+LVNG  
Sbjct: 120 DGDNAAAMRYTEMRLSKLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSE 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT++P HNL E  D  +A +DNP+I    + + + GPDFPTG ++    G   A
Sbjct: 180 GIAVGMATSVPPHNLRETADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG++ +R    +E       ++V+ +IPY VNKA ++E+IAELVREK+I  +ADLR
Sbjct: 240 LDTGRGAVKLRSQWTVEDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+++G R+V+E+KR   A+ I  QL   T L++    N++AL G  P +  +  + + 
Sbjct: 300 DESNKKGIRIVLEIKREFEAEAIAFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEH 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F A R EV+ RRT++ L++A DR H+L GL +A+  LDE +  IR S + + AR  L+  
Sbjct: 360 FRAHRIEVIQRRTQFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLID- 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                     + +   Q +AIL+++L +LTGL   DIR+E + L
Sbjct: 419 -------------------------LLGIDVTQAQAILDMKLQKLTGLQIQDIRDEHDRL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             E+ +  DIL+   R + I++ ELL + D+    R T I   L  +   D I  ED+++
Sbjct: 454 TAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVML 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  GY+KR+       Q RG KGRS + + ++D VT      +H +++  +  G V+ 
Sbjct: 514 IGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHA 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P      +G+   N+    +G  +  ++     ES      +V  T  G V+R 
Sbjct: 574 IKAYDIPDTGLGNKGRHYRNVFEGVEG-NVVAMLTVDGLESVT--HSLVIFTAQGLVKRT 630

Query: 661 KLSDFIQ-INRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFA 717
            LS +     R G   + L   D I+       E    +++     + +RF +   R   
Sbjct: 631 PLSAYSNATRRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAIG 690

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R S GVR ++L++  +V++  I+   D                                
Sbjct: 691 -RTSRGVRAMNLSEDARVVAGDIIHADD-------------------------------- 717

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                            L++  ++ VSEKG GK T + +FR+ +R GKG+ +   +K + 
Sbjct: 718 -----------------LEKAHLMVVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRS- 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   + +   ++L +D+G   R+  +++    RAT G  I        V++V   
Sbjct: 760 -GPVVAATVLFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIRNGSVRNVLAVPPP 818

Query: 898 RESE 901
            E +
Sbjct: 819 VEED 822



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 93/250 (37%), Gaps = 6/250 (2%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + R +L D    + + +      S  ++ + +   +E+ +L+ T+ G   R     +   
Sbjct: 473 IMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMN-R 531

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEIT 773
             R + G   +S+ + D V +       D   A  D    +            G+     
Sbjct: 532 QNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHY 591

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
               +      ++      L+     ++  + +G  KRT    +  + R G GI+   + 
Sbjct: 592 RNVFEGVEGNVVAMLTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNATRRG-GIQGISLV 650

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + + I           N+ +I+ +D    IR  + E R   R ++GV   + ++D RVV+
Sbjct: 651 EGDSIVCARVSKD-EPNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVA 709

Query: 894 VERIRESEIV 903
            + I   ++ 
Sbjct: 710 GDIIHADDLE 719


>gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 718

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 296/802 (36%), Positives = 432/802 (53%), Gaps = 90/802 (11%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPA
Sbjct: 1   PDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGM
Sbjct: 61  AMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGM 120

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNLGE+ +     +DN + D +    A+ME ++GPDFPT  +I+G  GI +AY 
Sbjct: 121 ATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIADAYK 180

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IA+ VR+ ++  I+++ D+
Sbjct: 181 TGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIEDQ 240

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L  +++ +
Sbjct: 241 SSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRHY 300

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+ L++  
Sbjct: 301 VDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIE-- 358

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + + E+Q +AIL+++L RL  L R  I ++L  + 
Sbjct: 359 ------------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIE 394

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I RED    
Sbjct: 395 AEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDXXXX 454

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
                         YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ 
Sbjct: 455 XXXXXXXXXXXXXXYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRA 514

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++ K
Sbjct: 515 KAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNGLVKKTK 571

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRN 720
           L+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +   GR 
Sbjct: 572 LTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRA 631

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+     D ++S+ +V                           T  + +     +
Sbjct: 632 TSGVQGMRFNADDYLLSLNVVREG------------------------TYLLVATSGGYA 667

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               I E   Q                              R GKG+    V      G 
Sbjct: 668 KRTAIEEYPVQ-----------------------------GRGGKGVLT--VMYDRRRGR 696

Query: 841 LVAVFPVNDNDQIILVSDKGTL 862
           LV    V+++ ++  ++  G +
Sbjct: 697 LVGALIVDEDSELYAITSGGGV 718



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 8/234 (3%)

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G     L   D +     C+  + IL  T  G+  R     +   A R + G    +L 
Sbjct: 477 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYEL-PEASRTARGQHVANLL 535

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                  +A V+   +  D     +   +   +       +        ++    ++E  
Sbjct: 536 AFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELV 595

Query: 791 -QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              L   E  +L VS  G   R S+ D   R   R+  G++    +  +    L+++  V
Sbjct: 596 GAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADD---YLLSLNVV 652

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRES 900
            +   +++ +  G   R  + E  +  R  KGV  +    +  R+V    + E 
Sbjct: 653 REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDED 706



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 87/233 (37%), Gaps = 9/233 (3%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +   LD+ DE++++   ++  DI    + G      I  I+  A  +    R  +L +  
Sbjct: 329 LVKALDALDEVIALIRASETVDI---ARQGLIELLDIDEIQAQAILDMQLRRLAALERQR 385

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +  +A +    AD ++ +   +      R    +  E       + +     +   ++L
Sbjct: 386 IIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDL 445

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +E                   +R   R GKG++   + + +    +   F  + +D I
Sbjct: 446 IAREDXXXXXXXXXXXXXXXXXXYRSQKRGGKGVQGAGLKQDD---IVRHFFVCSTHDWI 502

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903
           +  + +G + R    E+  ASR  +G  + +      +ER+  V +IR  E  
Sbjct: 503 LFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYEDA 555


>gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61]
 gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3]
 gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61]
 gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3]
 gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52]
          Length = 814

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 287/836 (34%), Positives = 449/836 (53%), Gaps = 46/836 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID PD  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 183 ALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++ IV+TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 243 AAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R+EVV  R+
Sbjct: 303 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM               
Sbjct: 363 HFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAH------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 410 -------------YGFTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
             +LLG+IK+EL ++K +    RRT I E + +  ++ E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G     M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 517 SYRSYSASNGQDMG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +++ L + + +   +P     +      ++F TK G V+R +L+ +     +
Sbjct: 572 KEVGQHISHLIPLERDDELVAAVPVSSFNTGEQ---LIFVTKQGLVKRTELAQYQVQRYT 628

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   D++++V        + L T  G  + F    I +   R + GV+GI L 
Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEISLVGVR-AAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V +   V   +         +    A +++   + E  +  K    +   +     
Sbjct: 688 EGDFVAAACPVRLEEGGS---FVVVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPH 744

Query: 791 QELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           + +        E+ +   +EKG  +   +   R+S+R   G    D  +   +  +
Sbjct: 745 RVVGAVFVSSDEEMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGMVVDV 800



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 76/218 (34%), Gaps = 15/218 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E+ I+  TK G   R         +   S G + + + + D++++   +   D  
Sbjct: 496 ALIPAEDVIVTVTKEGYVKRTS-----YRSYSASNG-QDMGMKETDRLLAQLEMNTTDVL 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                     Y    +          + I+ L      +  ++          EQ I  V
Sbjct: 550 LLFTRRGYYLYCPVHTLPDIRWKEVGQHISHLIPLERDDELVAAVPVSSFNTGEQLIF-V 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++G  KRT    +++  R  + + A +V + +    ++AV+  +    + L +  G  +
Sbjct: 609 TKQGLVKRTELAQYQVQ-RYTRPLVAVNVKEDD---DVIAVYATDGCGHLWLATHDGHAL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                EI +      GV      + + V +   +R  E
Sbjct: 665 LFAEEEISLVGVRAAGVKGIQLKEGDFVAAACPVRLEE 702


>gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10]
 gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 299/901 (33%), Positives = 478/901 (53%), Gaps = 90/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+++    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   EQKERYLDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ R +QDW +R +L++  GN GSVDGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVDF PN+D S +EPVVL   YPN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  +D+PD  +  L+  I+GPDFPTG +I G  G++ AY +G+G +V+
Sbjct: 182 PPHHLGEVIDAAIHQMDHPDCSVHDLLTYIQGPDFPTGGIIQGIEGLQKAYESGKGKVVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + ++   G++EQI++TEIPY++NKA +++K+ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RGKAEVQAIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A +  IL+ LY+ T LQ  +  NMVA++   P+   L  +L A++  ++EVV 
Sbjct: 302 VIELKKEADSQGILHFLYKNTDLQVSYHFNMVAIHNKTPKLMGLKQMLDAYIQHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKARDRAH++ GL  A++ LDEV+  IR S + + A+  L             
Sbjct: 362 RRTNFDLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRL------------- 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +E Q+ AI+ L+L RLT      +  E   L   IK+   I
Sbjct: 409 -------------QASYQFTEPQSEAIVNLQLYRLTNTDITTLEKEAGELRELIKKLEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           L S   L+  IK+EL  +K      RRT +   + D++      +  E++ V+V+  GYV
Sbjct: 456 LESEKNLIKEIKKELRYIKKTYTDERRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A            M++ D +     V+T  ++LFF+  G      V +LP 
Sbjct: 516 KRSSIRSYTASNG-----EEPSMKETDRLIHDLEVNTTDTLLFFTKKGSYLFVPVHQLPE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + NI++++Q + I   +P  E      + +++FATK G V+R+ L D+   
Sbjct: 571 TKWKDGGQHIANIVTMDQDDPIIHAIPVQEFRE---DRWLLFATKSGMVKRSVLKDYHAQ 627

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A+KL + DE+++V     E ++ L TK G  + F    + V   R + GV+GI
Sbjct: 628 RHSKALTALKLKTDDELINVYLTNGEENLFLATKKGYGLWFSEEEVSVTGQRTA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GDQ+ ++++  +                                            
Sbjct: 687 NLKEGDQLAALSVFNNE------------------------------------------- 703

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   K  F+L V+++   KR +   F  + R+ +G+      K      + A   V
Sbjct: 704 -------QKPDFVL-VTQRAAVKRMALKSFEKTTRAKRGVIMLKELKKAPH-EVAACMAV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +  + ++L S+  T   V   ++R++ R T G  I+    +  V  V  I    +V   E
Sbjct: 755 HGQETLVLESETRTRHAVIPKQLRLSDRYTNGSFIYDVQSEGPVQDVWMIEPEPVVGMNE 814

Query: 908 S 908
            
Sbjct: 815 E 815


>gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 839

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 310/901 (34%), Positives = 474/901 (52%), Gaps = 108/901 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 14  KVIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL RM Q +S R  L++G GNFGSVD DPPAA RYTE R
Sbjct: 74  ARVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETR 133

Query: 135 LQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   AH   L ++G++TV+F  N+D S QEPVVL ++ P +L+NG  GIAVGMATNIP H
Sbjct: 134 LSPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD  +A+ID PD+ +D L+E++ GPDFPTG +I+G  GI+ AY TGRGSI +R V
Sbjct: 194 NLAEVVDALIALIDRPDLSVDQLLELVPGPDFPTGGIIIGTEGIREAYTTGRGSITLRAV 253

Query: 254 SHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + +E+         R  I++TE+PYQVNK+ ++EKIAEL+ + RI  IADLRDESDR+G 
Sbjct: 254 AQMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREGM 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR      +L+QLYR T LQ+ F V M+AL   +P +  L  +L+ F+ FRE  
Sbjct: 314 RIVIELKRETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQPRQMGLKELLEHFLNFREHT 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L++A+ R H++ GL  A+ NLD V+ ++R + +   A++ L           
Sbjct: 374 LTRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTLQSE-------- 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + LS+ Q  AIL + L RLTGL + ++R E + L  +I++  
Sbjct: 426 ------------------LNLSDRQADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLE 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGY 547
            +L SR  LL  +K++L S+K +    R TRI      +   E+     ++ + +S  GY
Sbjct: 468 TLLGSRHELLKALKKDLRSLKRQYADQRLTRIQTEAEPLPSVEELAADTEVTLELSQRGY 527

Query: 548 VK--RVPLSVYRAQRRGGKGRSGVVMRDE------------DFVTDLFIVSTHTSVLFFS 593
           V+  R      R Q R  +G      + +            D +          ++L F+
Sbjct: 528 VRCLRGGERGRRNQARS-EGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFT 586

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFAT 652
             G  Y+  +  +P+G  + +G  L+ +L    Q E I      P   S      +V  +
Sbjct: 587 QSGKGYRVDLTAMPLGDRRDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQ---LVLLS 643

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G  +R  L DF ++   G    KL   D +  +      +++ + T  G+ +RF  S 
Sbjct: 644 AEGRAKRISLEDFAEVTARGLSVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRF-ASD 702

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                GR ++G + I L K ++++   ++   D                           
Sbjct: 703 EIPLMGRTTLGQQAIRLHKQERLVGAIVLQTYDN-------------------------- 736

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                      +L VSE+G+GKR      R+      G  A   
Sbjct: 737 ---------------------------LLLVSERGYGKRMPLNAVRLGRLGDLGTTAIQF 769

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             + +   L A+ P   N +++L +DK  +  + + +I I  +   G ++ +    E++ 
Sbjct: 770 --VAKPDHLAAIAPAPSNAEVMLFTDKNRMANLSLAQIPIWGKDGSGKLLLNLEVGEKLT 827

Query: 893 S 893
           S
Sbjct: 828 S 828



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S A+++   +    R+         RR        +T L   +  E  +++  C  L  
Sbjct: 578 LSDALLVFTQSGKGYRVDLTAMPLGDRR--DKGVPLVTLLPESAQQESIVAQFLCPPLPS 635

Query: 796 KEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           ++Q +L  S +G  KR S  DF  ++ R         V K+ +   L  +  V+ N ++ 
Sbjct: 636 EQQLVLL-SAEGRAKRISLEDFAEVTARG------LSVCKLKDGDYLAWMGLVDSNSEVA 688

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +  G L+R   +EI +  R T G       K ER+V    ++  +
Sbjct: 689 IATSTGRLLRFASDEIPLMGRTTLGQQAIRLHKQERLVGAIVLQTYD 735


>gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1]
          Length = 791

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 318/879 (36%), Positives = 483/879 (54%), Gaps = 93/879 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV  +K Y K ARI G
Sbjct: 5   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E MGKYHPHG+++IY+ALARMAQD+SLR  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 65  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 124

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++ D+ K+TV F PN+DGS  EPV   +R P +L+NG  GIAVGMATN+  HNL E+ 
Sbjct: 125 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEIS 184

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  ID+PD  ++ L++ ++GPDFP G +I   + + N Y TG G +  +G    E  
Sbjct: 185 DAIMYGIDHPDCSVEDLLKFVQGPDFPGGGMIYRNSDLLNIYRTGHGKVFCQG----EID 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             ++++I++  +PY VNKA  ++ +AE V+   I +I+D+RDESDR G RVVI++K   S
Sbjct: 241 DEEKKKIIIKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDDS 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             + +NQLY +T L++   VN + L   +P+  TL  ++  F+ FR E++ +R+ + +NK
Sbjct: 301 KGLTINQLYEHTPLETTIGVNNLVLLNNEPKVMTLDEMILGFIDFRLEIIRKRSVFEVNK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             DR H+L GL IA+ N+D V++IIR S N + A+  LM +                   
Sbjct: 361 LMDREHILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                  + LSE Q  AIL++RL RLTGL    I +EL S+   I+   +I+++ S+   
Sbjct: 402 -------LSLSEKQALAILDMRLQRLTGLEIKKINDELISIKENIERLNEIINNESKRRD 454

Query: 500 IIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           ++KQE L +K +    RRT+++   +    DED I  E+ ++ +S  G +KRV    Y  
Sbjct: 455 VLKQETLEIKKQFGDVRRTKVLNRDINARNDEDIIPNEESIMILSENGLLKRVSSEEYNV 514

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG      R ED V  +    +H  + FF++ G V + K + +   S  + G   
Sbjct: 515 QKRGGKGTIT-ATRKEDTVRSILSCMSHDMIYFFTNTGRVLRTKAYTIEKKSRTSLGSVG 573

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              L +N+ E+I  IM  P    +    +++  TK G ++R  + + + +  SG   +KL
Sbjct: 574 GTFLKMNENEKIKQIMKSP----ASPKNFLIIITKKGFIKRTPVKEILDMRESGLKIIKL 629

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D +DE++SV    + + I +     +   F +S      GR S GV+ + L  G +VI+ 
Sbjct: 630 DDQDEVVSVMDLEKPSKIFVAASNNKAAVF-LSDEVSSTGRASRGVKSMRL-NGAEVINS 687

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V   D                                                     
Sbjct: 688 FLVDDND----------------------------------------------------- 694

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +++++E G GKRT   DF I +R   G      S+    G+LV   PV D+ ++++V+ 
Sbjct: 695 TVMSITENGLGKRTKITDFSIHHRGSSGNLIFKESER--TGSLVTALPVGDSQEVLIVTR 752

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               IR+  +EI+I SR T GV + +   D+ VV+   +
Sbjct: 753 NNKTIRLNSDEIKIQSRVTSGVKLINVDDDDLVVAASVL 791


>gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
 gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
          Length = 622

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 299/645 (46%), Positives = 436/645 (67%), Gaps = 29/645 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A I+N DI++D L++ I+ PDFPTG  I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             ++IE+    RE I+V EIPYQVNKA M++K A+LV +K++  I+ +RDESDR G R+V
Sbjct: 243 AKANIEEV-NGRECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT+LQS FSVN +AL   +P+   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E ++L   I++  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  VKD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKDRRMDIIKEELEVVKDKYGDERRSNIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P G+ 
Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKH 654
            ++G+A+ N++++ Q +++   +   +  D+   N+ YV+ ATK+
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDDDYINSHYVIMATKN 620



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 96/243 (39%), Gaps = 25/243 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + +  D+ DE+++         ++  +      R  +      +   +  +  + L +  
Sbjct: 380 LIIASDNIDEVIA---------LIRASANADEARAKLIERFKLSEIQAKAIVEMRLRQLT 430

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE----- 788
            +    +    DA           +  + R +    EE+  +K+    E   + E     
Sbjct: 431 GLEQDKLRAEYDALMKTIEDLKDILDKKDRRMDIIKEELEVVKDKYGDERRSNIEYAGGD 490

Query: 789 -RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              +++   E+ ++T+S  G+ KRTS  +++  NR G G +A+     + +  L     V
Sbjct: 491 LSIEDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKASTTRNEDFLEHLF----V 546

Query: 848 NDNDQIIL-VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
             N Q +L  + KG    + V EI   ++ +KG     + +  +D++V  +  I   ++ 
Sbjct: 547 GTNHQYMLFFTQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQDDKV--MAFICTQDLK 604

Query: 904 DEA 906
           D+ 
Sbjct: 605 DDD 607


>gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
 gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
          Length = 1340

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 302/807 (37%), Positives = 446/807 (55%), Gaps = 90/807 (11%)

Query: 103  DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
            +     +L  G     S+DGDP AA RYTE RL   A  LL D+ K+TVDFR N+DGS++
Sbjct: 613  NEHHNFMLENGCIVHNSIDGDPAAAMRYTEARLSTIAEELLFDIDKNTVDFRDNFDGSYR 672

Query: 163  EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
            EP VL    PN+L+NG  GIAVGMATNIP HNL E+ D  + +IDNP++ ++ L++II G
Sbjct: 673  EPSVLPGLLPNLLLNGAAGIAVGMATNIPPHNLKELCDAIIYLIDNPEVTVEELIKIIPG 732

Query: 223  PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
            PDFPT   ILG  GI  AY TGRG I +R  +HIE+ +     IVVTE+PYQVNKA + E
Sbjct: 733  PDFPTAGNILGTEGILAAYGTGRGQITLRAKAHIEEANRGAFNIVVTELPYQVNKARLQE 792

Query: 283  KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            +IAEL ++K+I  I D+RDESDR G R+VI LK+ A    +LN LY++T +Q+ F +NM+
Sbjct: 793  RIAELAKDKKIEGIRDVRDESDRAGMRLVILLKQDAQPKRVLNALYKHTQMQTTFGINML 852

Query: 343  AL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            AL   G +P+  TL  +L+ +VA R+EV+ RRT+Y L KAR RAH+L GL IA+ N+D +
Sbjct: 853  ALVDQGRQPKVLTLKRMLQEYVAHRQEVIRRRTEYDLEKARARAHILEGLKIALDNIDAI 912

Query: 401  VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            +R IR S + E AR  L+                              LSE+Q +AIL++
Sbjct: 913  IRTIRESRSVEIARNNLISN--------------------------FSLSEIQAQAILDM 946

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            +L RL  L R  I +E   +   I E  DIL++  R+L +I+Q+L  +K++    RRTRI
Sbjct: 947  QLRRLAALERKKIEDEYAEVIKLIAELEDILANPRRVLQMIQQDLQRLKEKYGDERRTRI 1006

Query: 521  V-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
            + +   ++ DED I    +++T++  GYVKR    VYR QRRGG+G   +  R++D V  
Sbjct: 1007 IPDASGEVSDEDLIPDVRVLITLTDRGYVKRQATDVYRTQRRGGRGVRAMTTREQDLVRH 1066

Query: 580  LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            L    +H ++LFF+  G VY+ K   +P  +  A+G  L+N++SL+ GE++T+++  P+ 
Sbjct: 1067 LLTCGSHDNLLFFTDKGKVYQLKAHEVPDSARTAKGLPLVNLISLDPGEQVTSMLAVPDY 1126

Query: 640  ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                +  Y+V AT  G ++R +LS++ Q+  +G IA+ L+  D +  V       D+L+T
Sbjct: 1127 ----DGEYLVMATHRGKIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMT 1182

Query: 700  TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            T  GQ +RF   A+R    R + GV GI+L++GD+VISM + +                 
Sbjct: 1183 TVKGQTIRFQQQAVRSMG-RPATGVNGINLSEGDRVISMELAIP---------------- 1225

Query: 760  AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                 +  +L V+ +GFGKRT   D+  
Sbjct: 1226 -------------------------------------DSDLLVVTARGFGKRTELGDYPT 1248

Query: 820  SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
              R+  G+    +   +E   +     VN    +  V+  G ++R    EI   SRAT+G
Sbjct: 1249 KGRATGGVITIRLRPGDE---VAGAAIVNQRSLLTFVTAAGVVMRTSAGEISQLSRATQG 1305

Query: 880  VVIFSTAKDERVVSVERIRESEIVDEA 906
            V + +    +RV ++      E   E 
Sbjct: 1306 VTVVNPDDGDRVAALSVEEPDEDTGEP 1332



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/108 (58%), Positives = 84/108 (77%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSIT EM+ +YL+YA++VI+ RA+PD RDG+KPV RRI++GM  MG   N  Y K A
Sbjct: 6   VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           RI G+V+GK HPHG++++YDALAR+AQ W++R  LI+GQGNFG   GD
Sbjct: 66  RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGD 113


>gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
 gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
          Length = 816

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 291/901 (32%), Positives = 484/901 (53%), Gaps = 91/901 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G   +K +
Sbjct: 3   QTERYLDLPLEEVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+Q+W +R +L++  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL D+ K+TVD+ PN+D S QEPVVL A++PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSKIAAELLRDIDKETVDYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+DG +  ++NP++ LD LM++I+GPDFPTG ++ G  GI+ AY+TG+G +V+R
Sbjct: 183 PHHLGEVIDGVIMQMENPNVTLDELMQVIKGPDFPTGGIVQGIEGIRQAYSTGKGKVVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G ++QIV+TEIPY+V KA +++K+ E+  +K++  IA++RD++DR G R+V
Sbjct: 243 GKAEIEDLRGGKQQIVITEIPYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A+ IL  L++ T LQ  ++ NMVA++   P    L  +++A++  +++V++R
Sbjct: 303 VELKKDADANGILQYLFKNTDLQITYNFNMVAIHNKTPRLMGLKSLIQAYIDHQKDVIIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L KA+DR H++ GL  A++ LD+V++ IR S + + A+  L+ +           
Sbjct: 363 RATYDLQKAKDRQHIVQGLMKAISILDDVIQTIRASKDKKNAKDNLIAQ----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      +  E   L   I E   IL
Sbjct: 412 ---------------FDFTEAQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  +L+G++K+ELL++K +    RRT  +     + +  +  +  ED++VTV+  GYVK
Sbjct: 457 ASEKKLIGVVKKELLAIKKQFTDERRTIIKKEIEEIKITMDVLVASEDVMVTVTKEGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A      G     M++ D++   + ++T  ++L F+  G      V +LP  
Sbjct: 517 RTSLRSYAASNGELPG-----MKEGDYLLGRYEMNTQDTLLLFTKKGNYLYLPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++++++ + I T +   E     +   ++F T+ G  +R++LS +    
Sbjct: 572 RWKDNGQHVANLVTVDKDDDILTTLAVKEFSEEES---LLFITRQGMAKRSQLSLYKAQR 628

Query: 670 -RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+KL   DE++SV   +   ++ + T  G  + F  + I     R + GV+GI+
Sbjct: 629 FSKPLMALKLKDDDEVVSVMRTSGNEEVFIATSFGYGLWFSENEISQVGQR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+        D                                           
Sbjct: 688 LKNDDAVVDATTFTLND------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+ +G  KR S  +F  S R+ +G+      K N    +      +
Sbjct: 705 --------RVEFLVVTHRGGVKRISITEFDKSTRAKRGLVMLRELKKNPHHIVACKRISD 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +D   + ++ GT++ V  +  R + R + G  +    K   V +V +  E  ++D+ E 
Sbjct: 757 GSDTFFIKTEDGTIVTVAPSSFRRSDRYSNGSFVLDQDKTGVVTNVWK--EVSLIDDKEG 814

Query: 909 T 909
            
Sbjct: 815 E 815


>gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551]
 gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551]
          Length = 808

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 297/887 (33%), Positives = 471/887 (53%), Gaps = 88/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K +
Sbjct: 3   QTERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K TV+F  N+D +  EP VL A +PN+LVNG  GI+ G AT +P
Sbjct: 123 EARLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P   ++ LM  I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIP++VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 243 GKTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A  +L+ LY+ T LQ  ++ NMVA+   +P+  +L  IL A++  + EVV  
Sbjct: 303 VELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+R H++ GL  A++ LDEV+  IR S +   A+  L+ +           
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   LG +I E  +IL
Sbjct: 412 ---------------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVK 549
            S  +L  +IK+EL  VK +  T RR++I   + +++      +  E+++VTV+  GYVK
Sbjct: 457 HSEKKLFNVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A      G     M+D D +   + ++T  ++L F++ G      V  LP  
Sbjct: 517 RTSLRSYAASNGQDFG-----MKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ ++NI+ +++ E+I   +P  E +    N Y++F TK+G V++++L  +    
Sbjct: 572 RWKDMGQHIMNIVPIDKEEQIVRAIPVKEFKE---NQYLLFFTKNGMVKKSELLQYKAQR 628

Query: 670 -RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ V     +  + + T+ G  +RF    I +   R + GV+GI+
Sbjct: 629 YSKALVAVNLKGDDEVVDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTR-ASGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+S  I                                                
Sbjct: 688 LKDDDYVVSGVI------------------------------------------------ 699

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E +     +   +++G  K+T   +F  S R+ +G+      K N    +  V  ++
Sbjct: 700 -FDEDEALSTELFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH-QIAKVKAIS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
               +I+ S KG + +V  + +R + R + G  +   ++   +V V 
Sbjct: 758 KEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQSEAGNLVDVW 804



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 27/231 (11%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS--------MA 739
                E  ++  TK G   R       + +   S G +   +   D++++          
Sbjct: 498 VMVPSEEVMVTVTKDGYVKRTS-----LRSYAASNG-QDFGMKDTDRILAKYEINTTETL 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++     +Y     +       + +       +   K +  V     +E       + Q+
Sbjct: 552 LIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKE-----FKENQY 606

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++ G  K++    ++   R  K + A ++   +E   +V V+  +   Q+ + +  
Sbjct: 607 LLFFTKNGMVKKSELLQYKAQ-RYSKALVAVNLKGDDE---VVDVYQTDGKKQVFIATRS 662

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G  +R    EI I      GV   +   D+ VVS     E    DEA STE
Sbjct: 663 GYGLRFREEEINIVGTRASGVKGINLKDDDYVVSGVIFDE----DEALSTE 709


>gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319]
 gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319]
          Length = 808

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 296/887 (33%), Positives = 471/887 (53%), Gaps = 88/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K +
Sbjct: 3   QTERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K TV+F  N+D +  EP VL A +PN+LVNG  GI+ G AT +P
Sbjct: 123 EARLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P   ++ LM  I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIP++VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 243 GKTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A  +L+ LY+ T LQ  ++ NMVA+   +P+  +L  IL A++  + EVV  
Sbjct: 303 VELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+R H++ GL  A++ LDEV+  IR S +   A+  L+ +           
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   LG +I E  +IL
Sbjct: 412 ---------------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVK 549
            S  +L  +IK+EL  VK +  T RR++I   + +++      +  E+++VTV+  GYVK
Sbjct: 457 HSEKKLFNVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A      G     M+D D +   + ++T  ++L F++ G      V  LP  
Sbjct: 517 RTSLRSYAASNGQDFG-----MKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ ++NI+ +++ E+I   +P  E +    N Y++F TK+G V++++L  +    
Sbjct: 572 RWKDMGQHIMNIVPIDKEEQIVRAIPVKEFKE---NQYLLFFTKNGMVKKSELLQYKAQR 628

Query: 670 -RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ V     +  + + T+ G  +RF    I +   R + GV+GI+
Sbjct: 629 YSKALVAVNLKGDDEVIDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTR-ASGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+S  I                                                
Sbjct: 688 LKDDDYVVSGVI------------------------------------------------ 699

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E +     +   +++G  K+T   +F  S R+ +G+      K N    +  V  ++
Sbjct: 700 -FDEDEALSTELFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH-QIAKVKAIS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
               +I+ S KG + +V  + +R + R + G  +   ++   +V V 
Sbjct: 758 KEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQSEAGNLVDVW 804



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 27/231 (11%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS--------MA 739
                E  ++  TK G   R       + +   S G +   +   D++++          
Sbjct: 498 VMVPSEEVMVTVTKDGYVKRTS-----LRSYAASNG-QDFGMKDTDRILAKYEINTTETL 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++     +Y     +       + +       +   K +  V     +E       + Q+
Sbjct: 552 LIFTNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKE-----FKENQY 606

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++ G  K++    ++   R  K + A ++   +E   ++ V+  +   Q+ + +  
Sbjct: 607 LLFFTKNGMVKKSELLQYKAQ-RYSKALVAVNLKGDDE---VIDVYQTDGKKQVFIATRS 662

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G  +R    EI I      GV   +   D+ VVS     E    DEA STE
Sbjct: 663 GYGLRFREEEINIVGTRASGVKGINLKDDDYVVSGVIFDE----DEALSTE 709


>gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 711

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 334/706 (47%), Positives = 474/706 (67%), Gaps = 5/706 (0%)

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                ++NP++  D L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G +HIE   
Sbjct: 1   MLYIYVNNPEVTFDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLP 60

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI+LKR A A
Sbjct: 61  QDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLKRNAEA 120

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RRT++ L K 
Sbjct: 121 SFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRRTEFRLRKT 180

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I  +   S +
Sbjct: 181 REKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSAS 240

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L S  +L+  
Sbjct: 241 FLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKE 300

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK  L   K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV LS YR QR
Sbjct: 301 IKNNLQETKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQR 360

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG+ G  +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+  P ARG+AL+N
Sbjct: 361 RGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPTARGRALVN 420

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           I  L+ GE IT IMP P    +  N  +VFAT +GN+RRN L+DF  I  +GKIA+KLD 
Sbjct: 421 IFPLSDGETITNIMPLPS--ENDENQNIVFATAYGNIRRNSLADFHYIPSNGKIAIKLDE 478

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K D VISM I
Sbjct: 479 GDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKNDSVISMTI 538

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +       + +  Y+K   A +RL +     I S    +  +  I  E   +L + E+FI
Sbjct: 539 LNGIGVATETKELYLKVPLA-KRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFI 597

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D I+L++DKG
Sbjct: 598 LTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDNIMLITDKG 655

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 656 KLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 701


>gi|158338824|ref|YP_001520001.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
 gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 824

 Score =  591 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 314/899 (34%), Positives = 478/899 (53%), Gaps = 93/899 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 12  KVIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    +   L+++G+ TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNIP H
Sbjct: 132 LSPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VD  VA+ID+PD+ L+ LM ++ GPDFPTG  I+G+ GI +AY  GRGSI +R V
Sbjct: 192 NLGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIVGKQGIIDAYTNGRGSITVRAV 251

Query: 254 SHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+    R +     I+VTE+PYQVNKA  +EKIA L+ + RI  IADLRDESDR+G 
Sbjct: 252 TSIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRDESDREGM 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A    +L QLYR T LQS F V M+AL    P + +L  +L+ F+ FRE+ 
Sbjct: 312 RIVIELKREAQPPAVLEQLYRLTPLQSNFGVIMLALVNGVPLQLSLKEVLQKFLDFREQT 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR +  L +A+ R H++ GL  A+ +LD+++ I+R +P+  TA+ +L  +        
Sbjct: 372 LTRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKVQLKSQ-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS  Q  AIL + + RLTGL + ++R E + L  EI +  
Sbjct: 424 ------------------FQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLE 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGY 547
            +L +R  LL  +K++L ++K +   PRRT I       E     V  E ++V ++  GY
Sbjct: 466 RLLGNRHELLKALKKDLRALKKQYSDPRRTVIHGAAAKTEIFAAPVSDESVIVELNQRGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + + +S  +       G    V    D           T +L F+  G  Y   +  +P
Sbjct: 526 ARCMRVSKRKNNAPDLSGELADVST--DLTIFRHTTELTTDLLLFTGSGKAYGVGLQSIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S + +GK L+ +L  + G     I  F   E S +   ++  ++ G ++R  +S+F +
Sbjct: 584 FTSSKGKGKPLVTLLP-DSGRDDEIIARFLSTEIS-DTSQLILLSQQGKIKRLPMSEFAE 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G  A K+ S D++  V    QE ++ + T  G+ +  PI+ I     R + G +  
Sbjct: 642 MTSRGLGAAKIKSGDQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEMG-RTAQGNQVF 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K + ++ +A V                                              
Sbjct: 701 RLRKQESIVGLAAVRD-------------------------------------------- 716

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +L +S KG+ KR      R+      G +A       +   L+A+ P 
Sbjct: 717 ---------DADLLLISSKGYCKRLPIDLLRLGKVGDLGTQAMQFMI--KSDGLIALLPA 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           N N  +I++S++    R+ +  + +  +   G  +  T + E + +   I +++   E 
Sbjct: 766 NPNQDVIVLSNQERAARLNIETLPMWGQDGPGTQLLKTKRGEVLENTVVIPKADTEKET 824


>gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 875

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 318/934 (34%), Positives = 479/934 (51%), Gaps = 134/934 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 11  EVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 130

Query: 135 LQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       LL  +G+ TVDF  N+D S QEP VL A+ P +++NG  GIAVGMATNIP H
Sbjct: 131 LATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNPD+    LM++I GPDFPTG  I+   GIK AY +GRGSIV+RGV
Sbjct: 191 NLGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGV 250

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+         +  IVVTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G 
Sbjct: 251 AKIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A+ +V+L+ LY++T L S F    +AL   +P + +L  IL+ F+ FRE+ 
Sbjct: 311 RVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR +  L  A  R H++ GL  A++ LDEV+ I+R +P+  +A+  L  R        
Sbjct: 371 LLRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETR-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  S  Q  AIL + L RLTGL    ++ E   L  +I+   
Sbjct: 423 ------------------LDFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLR 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-----------------------EGLL 525
            +LS RS LL  +K+EL S+K     PRRTRIV                           
Sbjct: 465 RLLSERSELLKSLKKELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATES 524

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            +        E+ +V ++  GYV+RV P ++ R Q R       +    +DF    ++ +
Sbjct: 525 KILRPQLPAVEETLVEMTLRGYVRRVTPHNLSRPQSREDITIEAI----DDFPVTSYLTT 580

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-------------------LN 625
           T  +++  + +G  Y   V  +P  S ++RG  LI +LS                   L 
Sbjct: 581 TAETLVIINRMGKAYPLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLG 640

Query: 626 QGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
            G + + + P  +    + +  +   ++  +  G ++R   +DF+ ++  G   MKL   
Sbjct: 641 AGLQSSPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDN 700

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           DE+         + ++L T  G+ +R  I+       GR + G     L K +Q++   I
Sbjct: 701 DELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVG-CI 759

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            L +  + + +   +                                             
Sbjct: 760 TLSSTGELNNKFILL--------------------------------------------- 774

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
             VSE+G+ KR S    + S R G G +       N+  A   +      + I  ++ + 
Sbjct: 775 --VSEQGYFKRISLQSLQRSRRGGIGTQMLQFHSRND--ACRGLVATTPGEAIYCLTSEN 830

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ +  + + +  +   G  +      ER++SV
Sbjct: 831 RMVTLVPDVVPVWGKDGHGDRMVELRSGERILSV 864



 Score = 44.9 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFS 593
               ++ VS  GY KR+ L   +  RRGG G   +      D    L   +   ++   +
Sbjct: 768 NNKFILLVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHSRNDACRGLVATTPGEAIYCLT 827

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           S   +       +P+      G     ++ L  GERI +++ 
Sbjct: 828 SENRMVTLVPDVVPVWGKDGHGD---RMVELRSGERILSVVS 866


>gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
 gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
          Length = 876

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 315/935 (33%), Positives = 474/935 (50%), Gaps = 135/935 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 11  EVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 130

Query: 135 LQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    +  L   +G+ TVDF  N+D S QEP VL A+ P +++NG  GIAVGMATNIP H
Sbjct: 131 LAAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+ID+PD+    LM++I GPDFPTG  I+   GI  AY +GRGSIV+RGV
Sbjct: 191 NLGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVATAGIAEAYTSGRGSIVMRGV 250

Query: 254 SHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+         +  IVVTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G 
Sbjct: 251 AKIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGISDIRDESDREGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A+ +V+L+ LY++T L S F    +AL   +P + +L  IL+ F+ FRE+ 
Sbjct: 311 RVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILQEFLGFREQT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR +  L  A  RA ++ GL  A+A LDEV+ I+R +P+  +A+  L  R        
Sbjct: 371 LLRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKISLETR-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + L+  Q   IL + L RLT L    ++ E   L  +I    
Sbjct: 423 ------------------LDLTGEQADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLR 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---------------------- 526
            +LS R+ LL  +K+EL S+K     PRRTRIV                           
Sbjct: 465 LLLSERAELLKSLKKELRSLKRRYSDPRRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKS 524

Query: 527 -MEDEDCIVREDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            +        E+ +V ++  GYV+RV P ++ R Q R       +    +DF    ++ +
Sbjct: 525 KILRPQLPAVEETLVEMTLKGYVRRVTPSALSRPQSREDITIEAI----DDFPVASYLTT 580

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN--------QGERITTIMPF 636
           T  +++  + +G  Y   V  +P  S ++RG  LI +LS +          + I      
Sbjct: 581 TAETLVIINRMGKAYPLSVADIPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAG 640

Query: 637 PEDESSW----------------NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
              +SS                     ++  +  G ++R   +DF+ ++  G   MKL  
Sbjct: 641 AGLQSSPLRRTTDGGTSPKSAFSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKD 700

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRVFAGRNSVGVRGISLAKGDQVISMA 739
            DE+         + ++L T  G+ +R  I S      GR + G     L K +Q++   
Sbjct: 701 NDELSYANLAATGDQVVLATSGGRLLRLDINSEQIPVMGRTAQGSVATRLRKNEQLVGCI 760

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +                                                    +L  QF
Sbjct: 761 TLSSTG------------------------------------------------ELNNQF 772

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL VSE+G+ KR S    + S R G G +       ++  A   +  ++  + +  ++ +
Sbjct: 773 ILLVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHTRDD--ACRGLAAISPGEVVYCLTSE 830

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++ +  + + +  +   G  +      ER++SV
Sbjct: 831 NRMVTLVPDVVPVWGKDGYGDRMVELNSGERILSV 865


>gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
          Length = 812

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 297/891 (33%), Positives = 472/891 (52%), Gaps = 89/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKPFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ RM+QDW  R +LIE  GN GSVDGDPPAA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  +L D+GK TV+F PN+D    EP VL AR+PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSAIAAEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            L EV+D  +  +D P++ +D LM +++GPDFPTG +I G  GIK AY TGRG I++R  
Sbjct: 185 ALDEVLDAVLMRLDKPNVTVDELMTVMKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRAQ 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E   G +EQIV+TE+PY VNKA +++KI E   +KR+  IA++RDESDR G RVVIE
Sbjct: 245 AVVEPIKGGKEQIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+      IL  L++ T LQ  ++ NM+A++  +P   TL  +L A++A ++EVV  R+
Sbjct: 305 LKKDVPGQGILQYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYIAHQKEVVTNRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+DR+H++ GL  A++ LDEV+  IR S + + A+  L ++             
Sbjct: 365 IYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +EVQ  AI+ L+L RLT     ++R E + L   I +   IL S
Sbjct: 412 -------------FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDELDKLIAKLEGILQS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
            ++L+ +IKQELL +K     PRR++I + + +++      +  E++VVTV+  GY+KR 
Sbjct: 459 EAKLVRVIKQELLDIKKRFTEPRRSKIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A            M+D D++     ++T   +L F++ G    + V  LP    
Sbjct: 519 STRSHAASNG-----QDFAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +I+   + E I  +  F   E    N YV  ATK G ++R+ L+D+     S
Sbjct: 574 KDLGQHISSIVPTGEDESIIAVYGFETFEQ--PNTYVFTATKDGQIKRSPLADYAVTRYS 631

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                M + + D ++     T + +++LTT     +RFP+  +    G  + GV+GI+L 
Sbjct: 632 KPIKTMNVKAGDAMIYASFVTDDVELMLTTDTAYAIRFPMEEL-PVTGVKTGGVKGITLK 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G+ ++ + ++      Y                                          
Sbjct: 691 DGEALVGVNVLQPDVTQY------------------------------------------ 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ V+++G  K+ +  +  ++ R+ +G++     K N    +VAV    D 
Sbjct: 709 ---------VVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANPH-RIVAVVQATDG 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +Q+++ ++KG    + V  +  A R + G      A D  +  V   ++ +
Sbjct: 759 EQVVIETEKGVQEVIDVQALSRADRHSNGSFKVDIATDGAISHVVTAKKEQ 809



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 92/261 (35%), Gaps = 10/261 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  TK G ++R         N        +   D +L       ++ +LL T  G  + 
Sbjct: 506 VVTVTKDGYIKRTSTRSHAASN---GQDFAMKDSDYLLYEANLNTQHHLLLFTNRGNYIY 562

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G      +   + + +I++      +          K    +R  
Sbjct: 563 QPVHEL-PDIRWKDLGQHISSIVPTGEDESIIAVYGFETFEQPNTYVFTATKDGQIKRSP 621

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++       S    +                 +  ++  ++  +  R    +  ++    
Sbjct: 622 LADYAVTRYSKPIKTMNVKAGDAMIYASFVTDDVELMLTTDTAYAIRFPMEELPVTGVKT 681

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G++   +     +  +  + P +    +++V+ +G + ++ V E+ +A RA +G+ + +
Sbjct: 682 GGVKGITLKDGEALVGVNVLQP-DVTQYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLT 740

Query: 885 TAKDE--RVVSVERIRESEIV 903
             K    R+V+V +  + E V
Sbjct: 741 ELKANPHRIVAVVQATDGEQV 761


>gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 592

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/616 (48%), Positives = 416/616 (67%), Gaps = 27/616 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSL 624
               A+G  +IN+L +
Sbjct: 577 YGRTAKGIPIINLLGI 592



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              +    + G++     ++L  +E+  +T++++G+ KR     +R   R G+GI+    
Sbjct: 480 ADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMST 539

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + + +  LVA    + +D ++  ++ G + R    E+    R  KG+ I + 
Sbjct: 540 HEDDFVEHLVAT---STHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINL 589



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETC 690
           ++   +++        +  TK G ++R  LS +    R   G   M     D +  +   
Sbjct: 492 LVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT 551

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +  + +L  T  G+  R     +  +  R + G+  I+L
Sbjct: 552 STHDTLLFFTNTGKVYRSKGYEVPEYG-RTAKGIPIINL 589


>gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 819

 Score =  586 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 307/892 (34%), Positives = 464/892 (52%), Gaps = 112/892 (12%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
             +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ 
Sbjct: 4   TDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVV 63

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTECRL + 
Sbjct: 64  GDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAEL 123

Query: 139 AHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +H   L+ + ++ VDF PN+DGS  EP VL AR P +L+NG  GIAVGMATNIP HNLGE
Sbjct: 124 SHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVDG +A+ID+PD+  + L+  I GPDFPTG  IL   GI+ AY TGRGSI +RGV+  E
Sbjct: 184 VVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVARFE 243

Query: 258 KTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +         R  +V++E PYQVNKAA +EK+AEL  + RI  IADLRDESDR G RVV+
Sbjct: 244 EIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+   +L QLY+ T LQS F   ++AL   +P + +L  IL+ F+ FRE  + R 
Sbjct: 304 ELKREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATLNRM 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L + + +A  + G+ +A+A+L+ V+ ++R +P+  TA+ +L  R            
Sbjct: 364 FRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTR------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         +  +  Q   IL + L RLTGL R+ +  E   L   I+E   +LS
Sbjct: 412 --------------LGCTPQQAETILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI------VEGLLDMEDEDCIVREDMVVTVSHLG 546
            R +LL  +K+EL  +K     PRRT+I         +  +   +       ++  +  G
Sbjct: 458 DRRKLLNYLKKELRHLKKTFGDPRRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YV+R+PL   R+     +         ED +  L  V+    +L  ++ G  +   +  +
Sbjct: 518 YVRRLPLPSRRS-----RSNPAQRELGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGI 572

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ +  +RG  L+ +L     E I        D        +V  ++ G ++R  L++ +
Sbjct: 573 PLSTGSSRGVPLVTLLPNP--EPIVATFTLDPD---PGKASLVVLSRQGRIKRLALAELM 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            + + G   +KL   DE+        ++    ++L T  G+ +R  +  I +   R ++G
Sbjct: 628 GLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLMG-RAAMG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
              + L + ++++ MA+V                                          
Sbjct: 687 SPALRLGRTERIVGMALVP----------------------------------------- 705

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALV 842
                        +  ++  S  G+ KR S  +  I  R   G  A   S   ++   LV
Sbjct: 706 ------------SQGILVLASRLGYLKRLSLEEIPILERGQVGAPAFHFSDRGDVLVGLV 753

Query: 843 AVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            + P  +   + Q+ ++++   +      EI + SR+  G ++    K ERV
Sbjct: 754 GLPPELERPSHLQLDVITESEQVYSFSPAEIPLQSRSGGGSLLV---KGERV 802



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 93/278 (33%), Gaps = 57/278 (20%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L+  E    +   P  E +    +++  T+ G VRR  L            A +    D 
Sbjct: 486 LSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPL---PSRRSRSNPAQRELGEDV 542

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++ +E  T E +IL+ T  G+    PI+     +  +S GV  ++L    + I     L 
Sbjct: 543 LVGLECVTLEQEILVLTAGGKAFTLPIA-GIPLSTGSSRGVPLVTLLPNPEPIVATFTLD 601

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            D                                                   +  ++ +
Sbjct: 602 PDPG-------------------------------------------------KASLVVL 612

Query: 804 SEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S +G  KR +  +   ++ R         + + +E+G      P +    ++L +  G +
Sbjct: 613 SRQGRIKRLALAELMGLTQRGS---TVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRV 669

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +R+ V +I +  RA  G       + ER+V +  +   
Sbjct: 670 LRLDVQQIPLMGRAAMGSPALRLGRTERIVGMALVPSQ 707


>gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 645

 Score =  583 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 303/630 (48%), Positives = 427/630 (67%), Gaps = 26/630 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
              ++V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K
Sbjct: 38  SNESNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE 
Sbjct: 98  SARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEA 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL D+GKDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 158 RMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG VA+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G 
Sbjct: 218 NLGEVVDGIVALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGR 277

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E +   +E I+VTE+PYQVNKA ++EKIA+LVR+K+I  I+DLRDE+DR G R+VIE
Sbjct: 278 VEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIE 337

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G  +++ILN LY++T LQ+ F V M+AL    P    L  +L+ ++  R EV+ RRT
Sbjct: 338 LKKGEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRT 397

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA++RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +             
Sbjct: 398 EFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIAK------------- 444

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE+Q +AIL++RL RLTGL RD I  E N L + I+E   ILS 
Sbjct: 445 -------------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSD 491

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++ GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +
Sbjct: 492 DSKIYGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAI 551

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGG G +     ++D V D++I  T  ++L F++ G V+  KV+ +P    QA
Sbjct: 552 DTYRSQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQA 611

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSW 643
           RGK + NI++L+  E+++TI+   E E + 
Sbjct: 612 RGKLIGNIINLDTDEKVSTIIRVREFEKNK 641



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
             +    +  +   +E    +  + +    +E   ++L   E+ ++T++EKG+ KR +  
Sbjct: 493 SKIYGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAID 552

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            +R   R G G+ AT+  + +    +  ++     D +++ + KG +  V V EI    +
Sbjct: 553 TYRSQKRGGIGVNATNTIEDD---VVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGK 609

Query: 876 ATKGV---VIFSTAKDERVVSVERIRESE 901
             +G     I +   DE+V ++ R+RE E
Sbjct: 610 QARGKLIGNIINLDTDEKVSTIIRVREFE 638


>gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 283/632 (44%), Positives = 413/632 (65%), Gaps = 28/632 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  + 
Sbjct: 6   TKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA R
Sbjct: 66  PTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I+
Sbjct: 186 MPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G 
Sbjct: 246 VRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGL 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +V
Sbjct: 306 RVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S +P+TA+  LM+R        
Sbjct: 366 VTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 +VQ +AI++++L RLT L  +D+R EL  L + I    
Sbjct: 418 ------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLK 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY
Sbjct: 460 DLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGY 519

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  + 
Sbjct: 520 IKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQ 579

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPED 639
             S  +RG  + ++LS++  E IT ++   E 
Sbjct: 580 EASRTSRGSHIKSLLSVSSDEEITAVVSLKEF 611



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 109/250 (43%), Gaps = 24/250 (9%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-----ILLTTKLGQCVRFPISAIRVFAGRNSV 722
             R+     K + R  IL       +N      I+ +++  Q  +  +     F    + 
Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERFGFDDVQAQ 426

Query: 723 GVRGISLAKGDQVISMAI--VLHADADYDERICYMKHMSAQRR----LISGDTEEITSLK 776
            +  + L    ++ S+ I  +     +    I ++K + A       LI  +T EI    
Sbjct: 427 AIVDMQLK---RLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF 483

Query: 777 NDSSVEGNISEE----RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            D      +++E      ++L  KE+ ++ +S  G+ KR  +  ++  NR GKG  + ++
Sbjct: 484 GDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNL 543

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDE 889
           ++ +    L  +F  + +D I+ +++ G    + V+EI+ ASR ++G     + S + DE
Sbjct: 544 AEDD---FLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDE 600

Query: 890 RVVSVERIRE 899
            + +V  ++E
Sbjct: 601 EITAVVSLKE 610


>gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 689

 Score =  581 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 292/763 (38%), Positives = 437/763 (57%), Gaps = 85/763 (11%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DN
Sbjct: 6   NTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDN 65

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  + IE T   RE+IVV
Sbjct: 66  PEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVV 125

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VILN L+
Sbjct: 126 TEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLF 185

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT++   KA  RAH+L 
Sbjct: 186 KMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILE 245

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+ ++DEV+RIIR S     A+ ELM +                            
Sbjct: 246 GLLIALDHIDEVIRIIRASETDAEAQAELMSK--------------------------FK 279

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL+   R+  IIK EL  V
Sbjct: 280 LSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEV 339

Query: 509 KDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           K +    RRT + V  +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG+G  
Sbjct: 340 KRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQ 399

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
           G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     A+G  ++N+L L++ 
Sbjct: 400 GTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDED 459

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE+++V
Sbjct: 460 ESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINV 517

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                + DI++ TK G  VRF  SA+R  + R + GV+G++L +GD V+  +++   D  
Sbjct: 518 LLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLITDQD-- 574

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                            E  ++T    G
Sbjct: 575 -------------------------------------------------EVLVITEKGYG 585

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KRT + ++    R GKG++   +++ N  G L  +  V  ++ +++++D G +IR  +
Sbjct: 586 --KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNL 641

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 642 ANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 684


>gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
 gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
          Length = 808

 Score =  581 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 294/893 (32%), Positives = 471/893 (52%), Gaps = 90/893 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QAERFQDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GS+DGD PAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K TVDF PN+D S  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAISSELLRDIDKRTVDFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H L EV+D  +  +DNP   +  LM +I+GPDFPTG +I G  GIK AY TG+G I++R
Sbjct: 183 PHALHEVLDAVLMRMDNPQATVAELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G +EQIV+TEIP++VNKA M++KI +   ++++  I+++RDESDR G R+V
Sbjct: 243 SKAEIEPLKGGKEQIVITEIPFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+   A  IL+ LY+ T LQ  ++ NMVA+   +P   TL  +L A++  ++EV+ +
Sbjct: 303 IELKKDVQAQGILSYLYKNTDLQVSYNFNMVAIYKRRPTMMTLQTMLDAYIEHQKEVITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L KA DR H++ GL  A++ LD+V++ IR S +   A+  L+             
Sbjct: 363 RSEFDLQKASDRMHIVEGLMKALSILDKVIKTIRSSTDKRDAKNNLIA------------ 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     D++ E +SL   I E   IL
Sbjct: 411 --------------AFDFSEAQAEAIVSLQLYRLTNTDITDLQKEEDSLKKTIAELTGIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYVK 549
           +S ++L  +IK+EL +++ +   PRR+ I + + ++       I  E++VVTV+  GYVK
Sbjct: 457 TSSTKLKNVIKKELANIRKQFAEPRRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A    GK      M++ D +     ++T  ++L F++ G    + +  LP  
Sbjct: 517 RTSTRSYAASN--GKD---FAMKETDHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L +I+ L+  E +  + PF   E+   +  ++  +K G V+R+ L D+  Q 
Sbjct: 572 KWKDLGQHLSSIIQLDANESVLAVYPF---ENFDADASILTVSKLGQVKRSALKDYQIQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  M L S D ++     T+E ++ + T     VRFP+  + +   R + GV+G++
Sbjct: 629 YSRTVKTMNLKSGDAMIYAGLVTKETELFIGTNQAYGVRFPLEEVPLTGLR-TGGVKGVN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+ +S  ++   D +  + +  + H  A +++   + E                  
Sbjct: 688 LKGDDEAVSAILI---DPEVKQELVLVTHRGAAKKMKLDEFESG---------------- 728

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                           +R+ +G+      K N    + AV    
Sbjct: 729 --------------------------------SRAKRGVVMLRELKSNPHRVV-AVIGAT 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             ++IIL + KG  I +  N ++   R + G  I   + D +VV+  R+   E
Sbjct: 756 GKEEIILETAKGLRIPLVANSLKNVDRYSNGSFIADESSDGKVVAAYRLNTKE 808


>gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
 gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
          Length = 812

 Score =  581 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/891 (33%), Positives = 471/891 (52%), Gaps = 89/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K + K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKPFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ RM+QDW  R +LIE  GN GSVDGDPPAA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  +L D+GK TV+F PN+D    EP VL AR+PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSAIAGEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            L EV+D  +  +D P   +D LM +++GPDFPTG +I G  GIK AY TGRG I++R  
Sbjct: 185 ALDEVLDAVLMRLDKPTATVDELMTVLKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRAQ 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E   G +EQIVVTE+PY VNKA +++KI E   +KR+  IA++RDESDR G RVVIE
Sbjct: 245 AVVEPIKGGKEQIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+      IL  L++ T LQ  ++ NM+A++  +P   TL  +L A++  ++EVV  R+
Sbjct: 305 LKKDVPGQGILQYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYITHQKEVVTNRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+DR+H++ GL  A++ LDEV+  IR S + + A+  L  +             
Sbjct: 365 IYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +EVQ  AI+ L+L RLT     ++R E + L   I +   IL S
Sbjct: 412 -------------FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDDLNKLIAKLEGILQS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
            ++L+ +IKQELL +K     PRR+RI + + +++      +  E++VVTV+  GY+KR 
Sbjct: 459 EAKLVRVIKQELLDIKKRFTEPRRSRIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A            M+D D++     ++T   +L F++ G    + V  LP    
Sbjct: 519 STRSHAASNG-----QDFAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +I+  ++ E I  +  F   E    N Y++ ATK G ++R+ L+D+     S
Sbjct: 574 KDLGQHISSIVPTSEDESIIAVYGFETFEQ--PNTYILTATKDGQIKRSPLADYAVTRYS 631

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                M + + D ++     T + ++LLTT     +RFPI  +    G  + GV+GI+L 
Sbjct: 632 KPIKTMNVKAGDAMIYASFMTDDVELLLTTDTAYAIRFPIEEL-PVTGVKTGGVKGITLK 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G+ ++ + ++   +  Y                                          
Sbjct: 691 DGEALVGVNVLQPDETQY------------------------------------------ 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ V+++G  K+ +  +  ++ R+ +G++     K N    +VAV    ++
Sbjct: 709 ---------VVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANPH-RIVAVIQATND 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +Q+++ ++KG    + V  +  A R + G      A D  +  V   ++ +
Sbjct: 759 EQVVIETEKGVQEFIDVQALTRADRHSNGSFKVDIATDGAISHVLTAKKEQ 809


>gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645]
          Length = 823

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 488/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG]
 gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG]
          Length = 820

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 299/904 (33%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +IDNP+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSVRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
 gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
          Length = 819

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 293/903 (32%), Positives = 482/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K EL  +K +  TPRRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNG-----KELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++  P   +       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIDIP---AFTEEHRFLFVTKNGMTKQSLITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+L+V       DI L TK G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKDDDELLNVHLIDGTEDIFLATKNGYGLRYPITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+V+   ++   D                                          
Sbjct: 689 NLKQDDKVVGGIVLSSND------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------PKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D + + ++   ++ + V  +R+  R + G  +     +   VS+  +   EI D  +
Sbjct: 757 DNKDHLFIETNTDQIVEIDVANLRVTDRYSNGSFVLDETMEGEPVSIW-LDIPEIKDTTD 815

Query: 908 STE 910
           S E
Sbjct: 816 SKE 818


>gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis]
 gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137]
 gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000]
 gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017]
 gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027]
 gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244]
 gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031]
 gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302]
 gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341]
 gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346]
 gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B]
 gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630]
 gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A]
 gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 823

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312]
          Length = 823

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|229824235|ref|ZP_04450304.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
 gi|229786589|gb|EEP22703.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
          Length = 819

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 279/887 (31%), Positives = 442/887 (49%), Gaps = 95/887 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  +S  D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +     +  Y 
Sbjct: 3   QEMIQELSFADVIGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYRDRNTADNPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+QDW LR  LI+  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNPLIDMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ ++TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 123 ARLSPIAAQLLRDIKQETVDFILNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +    L+ L++++ GPDFPTGA+I G   I+ AY TG+G I +  
Sbjct: 183 HNLGEIIDAVIYLLTHKRPKLEELLDLVPGPDFPTGAIIQGIDAIQQAYKTGQGKITLVS 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G + QIVVTE+PY+VNK+ +++++ E+  ++++  IAD+RDESDR G R+V+
Sbjct: 243 QTDIETLKGGKSQIVVTELPYEVNKSKLIQRLDEIRIQRKVEGIADVRDESDRNGVRLVV 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   A  IL  L ++T LQ  +  NMVA+N  +PE   L  +L+A+++ ++EV+ RR
Sbjct: 303 ELKRDVDAKGILTYLLKHTDLQVNYHFNMVAINKRRPELVNLQTMLEAYISHQQEVLTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L   + R H++ GL   V+ LDEV+  IR S N + A+  L+              
Sbjct: 363 TQYDLANDQKRLHIVDGLIRVVSILDEVIATIRRSDNKQEAKENLVAE------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S  Q+ AI+ L+L RLT      ++ E   L   I    +ILS
Sbjct: 411 --------------FDFSMEQSEAIVSLQLYRLTNTDITALQQERLELNERILMYQNILS 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  ++  EL ++K +  TPRR++I   +   +++    I  E ++V+++  GY+KR
Sbjct: 457 NPEILNKVLINELKAIKKDFATPRRSQIQAEVQSLEIDTHILIPDEQVMVSLTKEGYMKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  + +      G     +RD D+   +  +STH  ++  +S G      V  LP   
Sbjct: 517 TSMRSFASSDLNSLG-----LRDFDYPIFVEELSTHQELVIITSKGNYIHIPVHELPEVK 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G  L     L  GER        ++E       V+ ATK G +++  LS F     
Sbjct: 572 WKDLGVHLSQNYQLQDGERFVNAFVASQEE-----HKVILATKAGMIKQTPLSAFTTYRS 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              R+ K    LD +DE+++VE      +  ++L ++   C+R+    +       + GV
Sbjct: 627 YKTRTAKAMNLLDDQDEVVAVECLKAGQNYEVVLLSRRSYCLRYSADLVSEMGL-KAKGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             I L + DQV++  +V                                           
Sbjct: 686 TAIKLKEEDQVVACLVVNQE---------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      K   +  ++++G  KR+         R  +G+      K N    L  +
Sbjct: 706 ----------AKRPQLFALTQRGNVKRSDLTVIPELGRGSRGVLLLKELKTNPHQLLKVL 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                  Q+ L+ D G  +    +EI ++ R   G      AK   +
Sbjct: 756 ALDKAQHQVCLLGDTGHSVVFAASEIPLSDRLANGSQAPDLAKLGHI 802



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 97/267 (36%), Gaps = 20/267 (7%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +   +V  TK G ++R  +  F     S   ++ L   D  + VE  +   ++++ T  
Sbjct: 500 PDEQVMVSLTKEGYMKRTSMRSFA---SSDLNSLGLRDFDYPIFVEELSTHQELVIITSK 556

Query: 703 GQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           G  +  P+  +        +GV   +   L  G++ ++  +    +              
Sbjct: 557 GNYIHIPVHELPEV-KWKDLGVHLSQNYQLQDGERFVNAFVASQEEHKVILATKAGMIKQ 615

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQE--LKLKEQFILTVSEKGFGKRTSSYDF 817
                 +      T      ++  +  E    E     +   ++ +S + +  R S+   
Sbjct: 616 TPLSAFTTYRSYKTRTAKAMNLLDDQDEVVAVECLKAGQNYEVVLLSRRSYCLRYSADLV 675

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIRVPVNEIRIAS 874
                  KG+ A  + + ++   +VA   VN      Q+  ++ +G + R  +  I    
Sbjct: 676 SEMGLKAKGVTAIKLKEEDQ---VVACLVVNQEAKRPQLFALTQRGNVKRSDLTVIPELG 732

Query: 875 RATKGVVIFSTAKDE-----RVVSVER 896
           R ++GV++    K       +V+++++
Sbjct: 733 RGSRGVLLLKELKTNPHQLLKVLALDK 759


>gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342]
          Length = 823

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583]
 gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583]
 gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 820

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62]
          Length = 820

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 297/855 (34%), Positives = 488/855 (57%), Gaps = 51/855 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V    ++ D  I  +      +R+++ +  ++   K    V
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVH---SEGDTPIVIVTQRGGVKRMLAQELTQLGRAKRGLMV 743

Query: 782 EGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     +L  ++KG  +   S ++ IS R+  G    D  K  ++
Sbjct: 744 LRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQV 803

Query: 839 GALVAV-FPVNDNDQ 852
             +  + F V + +Q
Sbjct: 804 MEVHEMHFAVIEEEQ 818



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 86/217 (39%), Gaps = 21/217 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SM 738
                QE+ ++  T  G   R  I +              I + +GD ++          
Sbjct: 497 AVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEE------IGMKEGDFLLYAGEVNTLDH 550

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +++    +   R  +       + +    ++ I +L  D S+   I+    +EL   + 
Sbjct: 551 LLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESI---IAVYPYKELSPTKT 607

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND--QIILV 856
           F+  +++ G  K+T   DF    R+ K    + +   ++   +  V+  ND D   + LV
Sbjct: 608 FVF-ITKAGMIKQTKMADFEPW-RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLV 665

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           S++G  +R P+ E+ +      GV   +  +D+ VV+
Sbjct: 666 SNRGFGLRYPLYEVPVVGSKAAGVKSMNLKEDDYVVN 702


>gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467]
          Length = 823

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 490/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++ + L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
 gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
          Length = 820

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
 gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
          Length = 820

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 488/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
 gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
          Length = 820

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 490/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++ + L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141]
          Length = 823

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSNIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012]
          Length = 823

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 299/904 (33%), Positives = 488/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSNIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L    G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVNNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I DE
Sbjct: 817 IEDE 820


>gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
 gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
          Length = 820

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 296/905 (32%), Positives = 479/905 (52%), Gaps = 97/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKNNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ KDTV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P+  LD LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGILQGKEEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   K+I  IA++RDE+DR G ++
Sbjct: 242 RSKTRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL+++V  R EV+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDEMRPQQVGLKHILESYVKHRREVIA 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQ---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I+E   I
Sbjct: 412 ----------------HGFTEEQAEAIVTLQLYRLTNTDITQLQAEAQELAETIRELTKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  + R T I   + ++  E +  + +ED+VVTV+  GYV
Sbjct: 456 LNEETELLKVIKKELREIKKKYHSDRMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +      ST   +L  ++ G V    +  LP 
Sbjct: 516 KRSSLRSYGASKPEELG-----MKEGDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L   E I  +  + E +   N    V  +K+G +++ ++++F  
Sbjct: 571 LKWKDLGEHISQTVMNLATEETILAVFTYQELDPQKN---FVLISKNGMIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKL-DSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL D  DE+++V    Q     + L +     +R+P++ +    G  +
Sbjct: 628 WRTYKSRPLTMMKLKDEADELVNVYLADQNEPLDVFLVSYRAFGLRYPLAEV-PVVGPKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + DQ+++  +V                                        
Sbjct: 687 AGVKAMNLKEDDQIVNGLLVYSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             ++ V+++G  KR  + +     R+ +G+      K N    +
Sbjct: 714 ------------------VIMVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKNPHRIV 755

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                  +N  +IL + KG +I +  N+I I  R + G  +        +  V R+ +  
Sbjct: 756 --YMGSGENQSLILTTQKGQMIEIETNQIPINDRTSNGSFVTDEKSGGLIHEVARVIDPA 813

Query: 902 IVDEA 906
           I +++
Sbjct: 814 IQEDS 818


>gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
 gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 823

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 299/904 (33%), Positives = 488/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IYDA+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
 gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
          Length = 820

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 299/904 (33%), Positives = 488/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IYDA+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  579 bits (1491), Expect = e-163,   Method: Composition-based stats.
 Identities = 281/632 (44%), Positives = 412/632 (65%), Gaps = 28/632 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  + 
Sbjct: 6   TKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA R
Sbjct: 66  PTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDPPAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I+
Sbjct: 186 MPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G 
Sbjct: 246 VRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGL 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +V
Sbjct: 306 RIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S + +TA+  LM+R        
Sbjct: 366 VTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMER-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 +VQ +AI++++L RLT L  +D+R EL  L + I    
Sbjct: 418 ------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLK 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLGY
Sbjct: 460 DLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGY 519

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  + 
Sbjct: 520 IKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQ 579

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPED 639
             S  +RG  + ++LS++  E IT ++   E 
Sbjct: 580 EASRTSRGSHIKSLLSVSSDEEITAVVSLKEF 611



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 108/250 (43%), Gaps = 24/250 (9%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-----ILLTTKLGQCVRFPISAIRVFAGRNSV 722
             R+     K + R  IL       +N      I+  ++  Q  +  +     F    + 
Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMERFGFDDVQAQ 426

Query: 723 GVRGISLAKGDQVISMAI--VLHADADYDERICYMKHMSAQRR----LISGDTEEITSLK 776
            +  + L    ++ S+ I  +     +    I ++K + A       LI  +T EI    
Sbjct: 427 AIVDMQLK---RLTSLEIEDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF 483

Query: 777 NDSSVEGNISEE----RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            D      +++E      ++L  KE+ ++ +S  G+ KR  +  ++  NR GKG  + ++
Sbjct: 484 GDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNL 543

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDE 889
           ++ +    L  +F  + +D I+ +++ G    + V+EI+ ASR ++G     + S + DE
Sbjct: 544 AEDD---FLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDE 600

Query: 890 RVVSVERIRE 899
            + +V  ++E
Sbjct: 601 EITAVVSLKE 610


>gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
 gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
          Length = 816

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 294/840 (35%), Positives = 458/840 (54%), Gaps = 46/840 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   SQTEKYLDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKH 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ R++QDW +R  LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGTVIGNYHPHGDSSVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K TVD+ PN+D +  EPVVL A++PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSSISAELLRDIDKQTVDYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  +  ID P+  +D LM++++GPDFPTG +I G  GI+ AY TGRG I++
Sbjct: 182 PPHNLEEVMDAVILKIDKPEASIDDLMKLMKGPDFPTGGIIQGVEGIRKAYETGRGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + +E   G REQIVVTE+P++VNKA M++K+ EL  ++++  IA++RDE+DR G RV
Sbjct: 242 RGKAVVETMKGGREQIVVTEVPFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A+++ +LN LY+ T LQ  +  NMVA+    P+  +L  +L A++A ++EVV 
Sbjct: 302 VIELKKDANSEGVLNYLYKNTDLQITYHFNMVAIQDKTPKLLSLPSLLDAYIAHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+  Y LNKA  RAH++ GL  A++ LDE++  IR S +   A+ ++  +          
Sbjct: 362 RQITYDLNKANARAHIVEGLIKAISILDELIATIRASKDKGDAKAQIKAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     ++  E   L  +IKE   I
Sbjct: 412 ----------------YGFTEEQAEAIVMLQLYRLTNTDIVELEKEAAELKEKIKEYESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           LSS  +L   IK+EL  +K +   PRRT I E    L +  E  +  ED++V+V+  GY+
Sbjct: 456 LSSDKKLFQTIKKELRQIKKKFADPRRTVIEEKIEELKINIEVTVASEDVLVSVTRDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A          + ++D+D+   L  V+T  ++L F++ G      V  LP 
Sbjct: 516 KRTSLRSYAASNE-----EELPVKDDDYPISLLEVNTTDNLLLFTNKGKYILCPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + NI+ L++ E +   MP  + +S+    Y++F TK+G V+R++   +   
Sbjct: 571 IRWKDMGQHISNIVPLDKEEYLIQCMPVRDFKSAEG--YLIFFTKNGMVKRSEFQLYDAQ 628

Query: 669 NRS-GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            RS   IA+ L   DE++ V       D+ + T  G  + +  S I V   R + GV+ +
Sbjct: 629 RRSKALIALNLKGDDEVVHVSHTNGNMDVFIATYKGYGLWYHESEISVVGQR-AAGVKSV 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL   D+V++  +    D   +  +  +    + +R+   D E+ T  K    +   +  
Sbjct: 688 SLKDDDEVVNGQV---FDDLSEPSLALITQRGSCKRMKLKDFEKTTRAKRGVIMLRELKN 744

Query: 788 ERCQELK------LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  +            Q I   +  G          + ++R   G    D     E+  +
Sbjct: 745 KAHRVKGFFALQDHDGQQICFQTANGNTHEIVPLTLKATDRYNNGSFVIDTDHEGEVIHV 804



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  T+ G ++R  L  +   N        +   D  +S+      +++LL T  G+ + 
Sbjct: 506 LVSVTRDGYLKRTSLRSYAASNEEELP---VKDDDYPISLLEVNTTDNLLLFTNKGKYIL 562

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G      + L K + +I    V    +     I + K+   +R  
Sbjct: 563 CPVHEL-PDIRWKDMGQHISNIVPLDKEEYLIQCMPVRDFKSAEGYLIFFTKNGMVKRSE 621

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                 +  S    +       E            +   + KG+G      +  +  +  
Sbjct: 622 FQLYDAQRRSKALIALNLKGDDEVVHVSHTNGNMDVFIATYKGYGLWYHESEISVVGQRA 681

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G+++  +   +E   +V     +D  +  + L++ +G+  R+ + +    +RA +GV++
Sbjct: 682 AGVKSVSLKDDDE---VVNGQVFDDLSEPSLALITQRGSCKRMKLKDFEKTTRAKRGVIM 738

Query: 883 FSTAKD 888
               K+
Sbjct: 739 LRELKN 744



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 14/210 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
            T   E+ ++  T+ G   R  + +        +     + +   D  IS+  V   D  
Sbjct: 498 VTVASEDVLVSVTRDGYLKRTSLRSY------AASNEEELPVKDDDYPISLLEVNTTDNL 551

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +                  + I+++      E  I     ++ K  E +++  
Sbjct: 552 LLFTNKGKYILCPVHELPDIRWKDMGQHISNIVPLDKEEYLIQCMPVRDFKSAEGYLIFF 611

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  KR+    +    R  K + A ++   +E   +V V   N N  + + + KG  +
Sbjct: 612 TKNGMVKRSEFQLYDAQRR-SKALIALNLKGDDE---VVHVSHTNGNMDVFIATYKGYGL 667

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +EI +  +   GV   S   D+ VV+
Sbjct: 668 WYHESEISVVGQRAAGVKSVSLKDDDEVVN 697


>gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
 gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
          Length = 848

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 297/926 (32%), Positives = 462/926 (49%), Gaps = 140/926 (15%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRRI++ M ++G+  ++ Y KCA
Sbjct: 13  IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM Q++S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  +L ++ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID P +  + L EII GPDFPTG  I+   GIK AY TG+G I ++GV+
Sbjct: 193 LGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGVT 252

Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           H+E  S       +R  IVVTE+PYQVNK+  +EK+A+LV + R+  IAD+RDESDRQG 
Sbjct: 253 HVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR      +L  LY+ T+LQS F V ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+ ++ L +A+ R H+L GL IA+ NLD+V+ I+R +P+  TA+++  +         
Sbjct: 373 LTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE-------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + +SE Q  +IL + + RLTGL +  ++ E   L   I +  
Sbjct: 425 ------------------LTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------------------- 529
            +L+ R  L+  +K++L ++K +    RRTRIV                           
Sbjct: 467 VLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTT 526

Query: 530 ------------------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
                                   +D V+T++  GY+     + + +     KG      
Sbjct: 527 PSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSIKKGT----- 581

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--IGSPQARGKALINILSLNQGER 629
              DF      +    S++  +  G  Y      +P     P +    L N +  N  ++
Sbjct: 582 ---DFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIPPQESQPCSLLNLLPNSVQKNS-QK 637

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I +   FP+ ++      ++  T  G ++R  +S+  QI   G   +KL   D +  +  
Sbjct: 638 IASYFLFPQQKNLSE---LILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDDRLGYLSL 694

Query: 690 CTQENDILLTTKLGQCVRFPI-SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
            ++ +++ + T  G+ +R           GRN+ G + + L  G+ ++        D   
Sbjct: 695 TSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVGCVTPKIDDN-- 752

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                              +L +++ G+
Sbjct: 753 ---------------------------------------------------LLLITQSGY 761

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKR      RI+     G  A   S  ++   L  +       ++ILV+++   + +P++
Sbjct: 762 GKRIPVNSLRITKLGEIGTMALQFS--SKTDNLAGMILAKPKKEVILVTNQERRLIIPID 819

Query: 869 EIRIASRATKGVVIFSTAKDERVVSV 894
            + I  +   G  +      E ++ V
Sbjct: 820 SVGIWGKDGVGDQVVKLKPQESILLV 845


>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
 gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
          Length = 855

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 335/938 (35%), Positives = 514/938 (54%), Gaps = 135/938 (14%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 7   KDSDIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAY 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA RYT
Sbjct: 67  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 127 EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+VDG + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR
Sbjct: 187 PHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVV
Sbjct: 247 AKTHIE-KKSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++R
Sbjct: 306 IELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +           
Sbjct: 366 RTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL
Sbjct: 415 ---------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT+         
Sbjct: 460 KSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI--------- 510

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                                                    +  G++ +    +      
Sbjct: 511 -----------------------------------------THRGYIKRVPSKQYEKQKR 529

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN-----VRRNKLSDFI 666
             +GK  +        + I +        ++  +  ++F T  G      V +       
Sbjct: 530 GGKGKLAVTTY---DDDFIESFF------TANTHDTLMFVTDRGQLYWLKVYKIPEGSRT 580

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
              ++    + L + ++I+++   T  ++   +   TK G   R  +S  +      SVG
Sbjct: 581 AKGKAVVNLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNI---RSVG 637

Query: 724 VRGISLAKGDQVISMAIV----------LHADADYDERICY------------------- 754
           V+ I+L + D++++  IV          L  D+  DE                       
Sbjct: 638 VKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKK 697

Query: 755 ---MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +K   A+ R I   +  +T++K     +  +       ++  EQ IL++S KG GKR
Sbjct: 698 GMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVG---AVVIENDEQEILSISAKGIGKR 754

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T++ ++R+ +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV +  IR
Sbjct: 755 TNAGEYRLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMQSIR 812

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            A R T GV I    +++ VVS+ +  + E+ DE    
Sbjct: 813 KAGRNTSGV-IVVNVENDEVVSIAKCPKEELEDEISDE 849


>gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
 gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 849

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 305/902 (33%), Positives = 462/902 (51%), Gaps = 118/902 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 23  VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RMAQD+S R  L+ G GNFGSVD DPPAA RYTECRL
Sbjct: 83  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142

Query: 136 QKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            + +H   L  + +  VDF PN+DGS  EP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+ID PD+  + L+  I GPDFPTG  I+   GI+ AY TGRGSI +RGV+
Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVA 262

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E+         R  ++++E PYQVNKAA LEK+AELV + R+  IADLRDESDR G R
Sbjct: 263 RFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMR 322

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELKR A+   +L QLY+ T LQS F V ++AL   KP++ +L  IL+ F+ FRE  +
Sbjct: 323 VVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATL 382

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  +  L + + +A  + G+ +A+A+L+ V+ ++R +P+  TA+ +L  R         
Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTR--------- 433

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            +  +  Q   IL + L RLT L R+ +  E   L   I E   
Sbjct: 434 -----------------LGCTSQQAETILAMPLRRLTTLERERLYQEQAELQARIAELQG 476

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI------VEGLLDMEDEDCIVREDMVVTVS 543
           +L  R +LL  +K+EL  +K     PRRT+I            +   +       ++ ++
Sbjct: 477 LLQDRRKLLNYLKKELRHLKKTFADPRRTQILSASELEAEAAQIPGGEAGEDSRFLLQLT 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYV+R+PL   R+     +         ED +  L  V+   ++L  ++ G  +   +
Sbjct: 537 RKGYVRRLPLPGPRS-----RSNPAQRELGEDTLVSLECVTPEQAILVLTASGRAFTVPI 591

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP-----FPEDESSWNNLYVVFATKHGNVR 658
             +P+ +  +RG  L+ +L     E I    P         E S     +V  ++ G ++
Sbjct: 592 EGIPLSTGSSRGVPLVTLLPNP--EPIVAAFPLDPVRVSGAEHSPGEASLVVLSRQGRIK 649

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRV 715
           R  L++ + +++ G   +KL   DE+         +    ++L T  G+ +R        
Sbjct: 650 RVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLDA-EQIP 708

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR ++G   + L + +Q++ MA++                                  
Sbjct: 709 LMGRAAMGSPALRLGRTEQIVGMALLPP-------------------------------- 736

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                +  ++  S  G+ KR    +  I  +   G+ A   S  
Sbjct: 737 ---------------------QGILVLASRSGYLKRLPLGEIPILEQGKVGVSAFHFS-- 773

Query: 836 NEIGALVAV------FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           N+   LV +         + + Q+ ++++   +      EI +  R+  G ++    K E
Sbjct: 774 NKGDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSFSPEEIPLQGRSGGGSLLV---KGE 830

Query: 890 RV 891
           +V
Sbjct: 831 QV 832



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 51/281 (18%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             ILS ++ E     +P    E+  ++ +++  T+ G VRR  L            A + 
Sbjct: 505 TQILSASELEAEAAQIP--GGEAGEDSRFLLQLTRKGYVRRLPL---PGPRSRSNPAQRE 559

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++S+E  T E  IL+ T  G+    PI      +  +S GV  ++L    + I  
Sbjct: 560 LGEDTLVSLECVTPEQAILVLTASGRAFTVPI-EGIPLSTGSSRGVPLVTLLPNPEPIVA 618

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A  L                                                 E    E 
Sbjct: 619 AFPLDP-----------------------------------------VRVSGAEHSPGEA 637

Query: 799 FILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            ++ +S +G  KR +  +   +S R         + + +E+G      P +    ++L +
Sbjct: 638 SLVVLSRQGRIKRVALAELVGLSQRGA---AVLKLKEGDELGWAALWHPGHQGYSVVLAT 694

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             G ++R+   +I +  RA  G       + E++V +  + 
Sbjct: 695 SGGRVLRLDAEQIPLMGRAAMGSPALRLGRTEQIVGMALLP 735


>gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
 gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
          Length = 820

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIVEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043]
          Length = 823

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MLLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
 gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
          Length = 823

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 631 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 689

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 690 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 717 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 757 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
 gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
          Length = 820

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
 gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
          Length = 820

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 489/904 (54%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MLLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
 gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
          Length = 817

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 299/907 (32%), Positives = 474/907 (52%), Gaps = 102/907 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E    I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K
Sbjct: 2   TETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G VMG YHPHG+++IY+A+ R++Q W LR  LIE  GN GS+DGDPPAA R
Sbjct: 62  PFRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K TV+  PN+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL E +   + ++D+P+ +LD LM+ I+GPDFPTG ++LG  GIK AY TGRG  +
Sbjct: 182 IPTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIMLGLDGIKKAYETGRGKAM 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G ++QIV+ EIPY+VNKA +++KI E+  +K+   IA++RDESDR+G R
Sbjct: 242 LRARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P+   L  IL++++  +  VV
Sbjct: 302 IVVELKKDANAQGILNYLFKNTDLQISYNFNMVAIDHKCPKHVGLKKILESYLEHQRIVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ LNKA++R H++ GL  A++ LD+V++ IR S N + A+  L+           
Sbjct: 362 TKRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLVS---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +   +E Q  AI+ L+L RLT      ++NE   L   I E   
Sbjct: 412 ----------------SFDFTEKQAEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL++   L  +IK+EL ++  +  TPR T I   + +  ++ E  + +ED+++ VS  GY
Sbjct: 456 ILNNGKELDKVIKKELKTIDKKYGTPRLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR  L  ++A      G     +++ED V  + + +T   +L F++ G V    +  + 
Sbjct: 516 VKRSSLRSFKASDESDNG-----LKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  ER+     F   E        VFATK G +++  L D   
Sbjct: 571 DSRWKDTGEHLSQTVGLSDDERVIEAFTFDSLEKEGA---FVFATKEGMIKQTLLKDLKP 627

Query: 668 ---INRSGKIAMKLDSR-DEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRN 720
                   +  +KL +  DE++  E    EN    +  TT  G  +R+ ++ +     R 
Sbjct: 628 GRTYRSRAQTFIKLKTDTDEVIMAEFVETENEDLQVFCTTHAGYGLRYLLNEVPTTGART 687

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV+ + L   D +IS+++V   D                                   
Sbjct: 688 S-GVKCMDLR-DDFLISVSLVSEHD----------------------------------- 710

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +  V+++G  K+        ++R+ +G++     K N    
Sbjct: 711 ------------------EVAIVTQRGAFKKMKVDKIPENSRARRGVQILRELKRNPH-R 751

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIR 898
           +    PV + D++I+ +  G  I + V++     R + G  +  T       +V++ R +
Sbjct: 752 IFFAKPVIETDKLIIETTAGEKIELSVSDHPSCDRYSNGSFVLDTDSQGNPCLVTIVR-Q 810

Query: 899 ESEIVDE 905
           E++  DE
Sbjct: 811 ETDSEDE 817


>gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland
           1988]
          Length = 819

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 293/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEGKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   +++  +                                          
Sbjct: 689 NLKQDDIVIGGIVLMPNE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + E
Sbjct: 816 AKE 818


>gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
 gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
          Length = 586

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/604 (49%), Positives = 417/604 (69%), Gaps = 27/604 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +   PRRT + V  +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDPRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQAR 614
             A+
Sbjct: 576 RTAK 579



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 83/204 (40%), Gaps = 14/204 (6%)

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM 738
           +++++   +   I+  ++  +  +  + +    + R S  +  + L      + D++ S 
Sbjct: 381 LIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSE 440

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE----RCQELK 794
                  A   +    +       ++I  + +E+     D      +  E      ++L 
Sbjct: 441 Y--DELIALIADLADILAKPERVAQIIKEELDEVKRKFGDPRRTELMVGEVLTLEDEDLI 498

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    + +D ++
Sbjct: 499 EESDVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---STHDHLL 555

Query: 855 LVSDKGTLIRVPVNEIRIASRATK 878
             ++KG + R+   EI    R  K
Sbjct: 556 FFTNKGRVYRLKGYEIPEYGRTAK 579


>gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 981

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 315/907 (34%), Positives = 468/907 (51%), Gaps = 113/907 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EMQ SYL YA++VI+ RA+PD RDGLKPV RRIL+ M  MG+  +  Y K A
Sbjct: 6   VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+A+AR+AQD+++R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL  + ++TVDF  N+DG+ +EP VL A  PN+LVNG  GIAVGMATNIP HNL
Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRT---GIKNAYATGRGSI 248
            EVVD    ++D      +I +  LM  I+GPDFPTG ++L      G+  AY +G+G I
Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IRG  H E     R ++++TE+PYQ NK +++E+IAELVRE  +  I+DLRDESDRQG 
Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+GA  +  +  LY  T LQS F + ++AL   +P   TL   L+ F+  R  V
Sbjct: 306 RIVIELKQGAEVETTIRTLYHRTPLQSTFGIILLALVDGEPRLLTLKQALRVFLEHRIVV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR++Y L +AR RAH+L GL +A+ NLDEV+++IR +P+ E AR  LM+R        
Sbjct: 366 VRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKR-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AIL+++L RL  L R  I  E   +  +IK   
Sbjct: 418 ------------------FKLSEIQAQAILDMQLRRLASLERKKIEEEYREVTAQIKALE 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED------CIVREDMVVTV 542
            +L+S  ++   +K+ELL +K++    RRT+IV    +               + + V V
Sbjct: 460 SLLASAKKIRLAVKEELLKMKEQYGDRRRTQIVTLEGETAIHQFLTADEMAPADKVWVGV 519

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
              G V R            G+G                  ST   ++  ++ G      
Sbjct: 520 MADGRVGRT----------AGEGLPAT------PALHCLRASTRAVLILANAQGQASALS 563

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP+      G  L    +L++G+R+   +    D+   +  Y++  T++  V+++ L
Sbjct: 564 VGALPVVERWQDGMPLHKASALSEGDRVVLALALEPDDPKTD-RYLLTVTRNALVKKSSL 622

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +    +      +K++  DE+L+      ++++LL T  G  +RF  S +R      + 
Sbjct: 623 EELPGPSAQKFTLVKVNPEDELLTGVVTEGQDEVLLLTAGGMAIRFSESEVRPMGL-VAA 681

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+ L +GDQV  + +                                          
Sbjct: 682 GVLGMKLTEGDQVSGLVL------------------------------------------ 699

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                        +E+ IL     G   R +  DF +  R G+G+ AT VS       +V
Sbjct: 700 -----------NPQEKDILFACSDGTTGRIAGADFPLQGRYGQGVLATRVS---RGAEVV 745

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V    +++L      ++ VPV+EI    R  KG  +      + ++++  +   E 
Sbjct: 746 GALGVQHQKEVLLHLSSQDVLVVPVSEIHRIKRGNKGTRLKLATPGKEILALTWMPAIET 805

Query: 903 VDEAEST 909
             + E +
Sbjct: 806 PTKPEGS 812


>gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e]
 gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561]
 gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S]
 gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
 gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e]
 gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes]
 gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
          Length = 819

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 293/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   +++  +                                          
Sbjct: 689 NLKQDDIVIGGIVLMPNE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + E
Sbjct: 816 AKE 818


>gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
 gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
          Length = 820

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 298/904 (32%), Positives = 488/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K++DF  
Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTKMADFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V     +
Sbjct: 628 WRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPVVGS-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L + D V++  +V                                        
Sbjct: 687 AGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ V+++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 754 VVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
 gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
          Length = 819

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 290/885 (32%), Positives = 474/885 (53%), Gaps = 92/885 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K
Sbjct: 2   TNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+
Sbjct: 122 YTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V
Sbjct: 182 IPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R
Sbjct: 242 VRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++
Sbjct: 302 IAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINRKRPELMGIIPMLDAYIDHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L            
Sbjct: 362 TKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTN--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ L+L RLT     ++++E  SL  +I     
Sbjct: 413 -----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAASLAEQISVLEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL   + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GY
Sbjct: 456 ILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR     Y A          + M++ D    +  +++  S+L F+S G      V  LP
Sbjct: 516 VKRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 570

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++ 
Sbjct: 571 DIRWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYK 627

Query: 667 QIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+
Sbjct: 628 PQRYSKSMMAIKLKDDDELLSVHLIDGSEDIFLATKNGYGLRYSITEIPESGARTA-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I+L + D V+   ++   +                                        
Sbjct: 687 AINLKQDDIVVGGVVITPNE---------------------------------------- 706

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      ++ IL  +++G  K+  + +F   +R+ +G+      K N     + + 
Sbjct: 707 -----------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLT 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
             ++ND + + ++   ++ + VN +RI  R + G  +   T + E
Sbjct: 755 LADNNDHLFIETNTDQVVEIDVNNLRITDRYSNGSFVLDETMEGE 799



 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 95/248 (38%), Gaps = 19/248 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +  +I +  K A + + + EI  ++         E+ I+  TK G   R    +     
Sbjct: 469 EELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSY---- 524

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
              +     +++ + D  I +  +   D+           Y               + ++
Sbjct: 525 --AASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVS 582

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L +D S    I      +   +E+  L V++ G  K+++  +++   R  K + A  + 
Sbjct: 583 HLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIKLK 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E   L++V  ++ ++ I L +  G  +R  + EI  +   T GV   +  +D+ VV 
Sbjct: 642 DDDE---LLSVHLIDGSEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLKQDDIVVG 698

Query: 894 VERIRESE 901
              I  +E
Sbjct: 699 GVVITPNE 706


>gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161]
 gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 819

 Score =  576 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 293/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   ++                                              
Sbjct: 689 NLKQDDIVIGGIVL---------------------------------------------- 702

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                +  +++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 703 -----MLNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + E
Sbjct: 816 AKE 818


>gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99]
          Length = 819

 Score =  576 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 292/903 (32%), Positives = 485/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  ++L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKERDHAIFIQKMNSLDTLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I   +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRAAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+L+V       DI L T+ G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKDDDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+   ++   DA +                                       
Sbjct: 689 NLKQGDIVVGGVVLREGDAKH--------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 710 ------------ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIDITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND++++ ++   ++ + V  +R+  R + G  +     +    S+  +   EI D A+
Sbjct: 757 DNNDRLLIETNSEQVVEIEVANLRVTDRYSNGSFVLDETMEGEPTSIW-LDIPEIKDTAD 815

Query: 908 STE 910
           + +
Sbjct: 816 AKD 818


>gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
 gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
          Length = 810

 Score =  576 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 292/887 (32%), Positives = 472/887 (53%), Gaps = 90/887 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G   +K 
Sbjct: 2   SQTERYLDLPLEDVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ RM+Q+W +R LL++  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TVD+ PN+D S  EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISAELLRDIDKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG +  ++ P   L+ LM +I+GPDFPTG ++ G  GIK AY TG+G +++
Sbjct: 182 PPHHLSEIIDGVIMQMEKPQTTLEDLMTVIKGPDFPTGGIVQGIDGIKQAYRTGKGKVIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E+  G R+QI +TEIPY+V KA +++K+ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RAKTEVEELRGGRQQITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A A  IL+ L++ T LQ  ++ NMVA++   P+   L  +++A++  ++EV  
Sbjct: 302 VVELKKEADAKAILHYLFKNTDLQVTYNFNMVAIHNKTPKLMGLQPLIQAYIDHQKEVAT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L KA+DR H++ GL  A++ LDEV+  IR S + + A+  L++           
Sbjct: 362 RRAQYDLKKAKDRQHIVKGLIKAISILDEVIATIRSSKDKKDAKENLIRE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT      +  E   L   I E   I
Sbjct: 412 ----------------YDFSEAQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           L S  +L+ +IK+ L SVK +   PRRT I E + +++      +  ED++VTV+  GYV
Sbjct: 456 LGSEKKLITVIKKGLQSVKKQFADPRRTVIKEEIEEIKINMDVLVASEDVMVTVTEEGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A      G     M++ D + D F ++T  ++L F+ LG      V  LP 
Sbjct: 516 KRTSIRSYTASNGEPPG-----MKEGDRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + N++S+++ + I   MP  E   S +   ++F TK+G  +R++LS +   
Sbjct: 571 IRWKDNGQHIANLVSVDRDDCILRAMPVKEFSESES---LLFITKNGMAKRSQLSLYQAQ 627

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL + DE++SV     + ++ + T LG  + F    I +   R + GV+ I
Sbjct: 628 RFSKPLMALKLKADDEVVSVMRTDGKKELFIATHLGYGLWFDEEEISLVGQR-AAGVKAI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+V+        D                                          
Sbjct: 687 NLKDDDKVVDAFTFEPED------------------------------------------ 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  V+ +G  K+    +F  S+R+ +G+      K N    ++    V
Sbjct: 705 ---------KVDLFIVTHRGAVKKMPLSEFDKSSRAKRGLVMLRELKSN-AHRVIGCRRV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +    I ++++KG    +  +  R++ R + G     +A+   V  V
Sbjct: 755 SKETLIEILTEKGQQETIDPSAYRMSDRYSNGSFAIDSAQAGSVTEV 801



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 17/222 (7%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR-GISLAKGDQVISMAIVLHADA 746
                E+ ++  T+ G   R  I      +   S G   G+   +GD+++    +   D 
Sbjct: 498 VLVASEDVMVTVTEEGYVKRTSI-----RSYTASNGEPPGMK--EGDRLLDRFEMNTTDT 550

Query: 747 ----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                      Y+            + + I +L +    +  +     +E    E  +  
Sbjct: 551 LLLFTKLGSYLYVPVHHLPDIRWKDNGQHIANLVSVDRDDCILRAMPVKEFSESESLLF- 609

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +++ G  KR+    ++   R  K + A  +   +E   +V+V   +   ++ + +  G  
Sbjct: 610 ITKNGMAKRSQLSLYQAQ-RFSKPLMALKLKADDE---VVSVMRTDGKKELFIATHLGYG 665

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +     EI +  +   GV   +   D++VV        + VD
Sbjct: 666 LWFDEEEISLVGQRAAGVKAINLKDDDKVVDAFTFEPEDKVD 707


>gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071]
 gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071]
          Length = 819

 Score =  575 bits (1482), Expect = e-162,   Method: Composition-based stats.
 Identities = 293/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   +++  +                                          
Sbjct: 689 NLKQDDIVIGGIVLMPNE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + E
Sbjct: 816 AKE 818


>gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 807

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 467/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ II+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNCTVDDLLAIIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 IELKKEANAEGILNYLYKNTDLQITYNFNMVAINNRRPTLMTLPNILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L+ +           
Sbjct: 362 RSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      + NE   L  +I     IL
Sbjct: 411 ---------------FSFTEAQAEAIVSLQLYRLTNTDITALENEAEELNQKITTLQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  +LL +IK +L  VK      RR+        + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 NSEKKLLQVIKADLKRVKKTYSDERRSVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E +      P  E      +VVF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETLIWATVVPNFEE--EKRFVVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAINLKKDDEVVDIFATDGTSDIVLATHGAYALIFDEEEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V +                                                   
Sbjct: 688 LKEDDYVAAG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++   + V+++G  KR  + +   S R+ +G+      K N    +V +  + 
Sbjct: 698 --KPLNSEKDQFMLVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEVIR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++    +   VV
Sbjct: 755 DDELVYMKTEKQIVEEIDPKTFRNKDRYSNGSLVLDVNETGEVV 798



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDVLLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G  V  I     D+ +  A V+    +    + ++      ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETLIWATVVPNFEEEKRFVVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   ++     +E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAINLKKDDEVVDIFATDGTSDIVLATHGAYALIFDEEEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + A  P+N + DQ +LV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVAAGKPLNSEKDQFMLVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E IR+ E+V
Sbjct: 738 KELKRNPYRIVGIEVIRDDELV 759


>gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
 gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
          Length = 816

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +  ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKEA----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVV 649
             S+   ++      L           L  I    +  +I T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + D D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--VNGLLVLADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L       I  I    +  S+   L+ V   +   V++N  S  +   +     +K+
Sbjct: 435 ITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKI 494

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
           D++          QE+ I+  T+ G   R  + +              I + +GD ++  
Sbjct: 495 DTQ------VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYS 542

Query: 737 ------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    +++   A+   R  +       +      ++ I++L  D S+      ++ 
Sbjct: 543 GELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKI 602

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           Q     E+  + +S+ G  K+T   +F        + +    +    +    V +     
Sbjct: 603 Q----AEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQP 658

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + LV+ +G  +R P+ ++ +      GV   +    +R+V+
Sbjct: 659 GLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVN 702


>gi|313623959|gb|EFR94061.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL J1-023]
          Length = 818

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 285/882 (32%), Positives = 469/882 (53%), Gaps = 91/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++E   L  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F++ G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     +S       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIAI---DSFTEQKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             S  +       DE+L+V       DI L TK G  +R+PI+ I     R + GV+ I+
Sbjct: 630 RYSKSMMAIKLKEDELLNVYLIDGTEDIFLATKNGYGLRYPIAEIPESGARTA-GVKAIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD VI   ++   D                                           
Sbjct: 689 LKQGDVVIGGVVLTPND------------------------------------------- 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + IL  +++G  K+  + +F   +R+ +G+      K N     + +   +
Sbjct: 706 --------NKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLILAD 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
             D + + +++  ++ + V  +R+  R + G  +   T + E
Sbjct: 757 SKDHLFIETNREQIVEIDVANLRVTDRYSNGSFVLDETMEGE 798



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           S+   I +  K A + + + EI  ++         E+ I+  TK G   R    +     
Sbjct: 469 SELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSY---- 524

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
              +     +++ + D  I +  +   D+           Y               + ++
Sbjct: 525 --AASNGAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVS 582

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L +D S    I      +   +++  L V++ G  K+++  +++   R  K + A  + 
Sbjct: 583 HLASDLSAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIKLK 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +      L+ V+ ++  + I L +  G  +R P+ EI  +   T GV   +  + + V+ 
Sbjct: 642 EDE----LLNVYLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIG 697


>gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
 gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
          Length = 817

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +  ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKEA----------------ESLIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVV 649
             S+   ++      L           L  I    +  +I T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + D D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--VNGLLVLADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L       I  I    +  S+   L+ V   +   V++N  S  +   +     +K+
Sbjct: 436 ITELQKEAESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKI 495

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
           D++          QE+ I+  T+ G   R  + +              I + +GD ++  
Sbjct: 496 DTQ------VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYS 543

Query: 737 ------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    +++   A+   R  +       +      ++ I++L  D S+      ++ 
Sbjct: 544 GELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKI 603

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVND 849
           Q     E+  + +S+ G  K+T   +F        + +    +    +    V +     
Sbjct: 604 Q----AEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQP 659

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + LV+ +G  +R P+ ++ +      GV   +    +R+V+
Sbjct: 660 GLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVN 703


>gi|191638406|ref|YP_001987572.1| DNA topoisomerase IV subunit A [Lactobacillus casei BL23]
 gi|190712708|emb|CAQ66714.1| Topoisomerase IV, subunit A [Lactobacillus casei BL23]
 gi|327382435|gb|AEA53911.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei LC2W]
 gi|327385634|gb|AEA57108.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei BD-II]
          Length = 814

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/901 (32%), Positives = 455/901 (50%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I      L++     +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I+  +  T  Q+ D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTT---------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +  ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 708 -----------AKVGILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPAQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|116494895|ref|YP_806629.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
 gi|116105045|gb|ABJ70187.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
          Length = 814

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/901 (32%), Positives = 454/901 (50%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+   + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVIAAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I      L++     +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I+  +  T  Q+ D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTT---------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +  ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 708 -----------AKVGILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPAQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 819

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 290/883 (32%), Positives = 472/883 (53%), Gaps = 92/883 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G IV+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++E   L  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELADQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              S L+ ++K EL  +K +  TPRRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDESELIAVLKSELADIKKKYKTPRRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  ++L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QTFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+LSV       DI L T+ G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKDNDELLSVNLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   I+   D  +                                       
Sbjct: 689 NLKQDDIVIGGVILAPNDTKH--------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 710 ------------ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGMTLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
           ++ND + + ++   ++ + V  +R+  R + G  +   T + E
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRVTDRYSNGSFVLDETMEGE 799



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 93/248 (37%), Gaps = 19/248 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           S+   I +  K   + + + EI  ++         E+ I+  TK G   R    +     
Sbjct: 469 SELADIKKKYKTPRRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSY---- 524

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
              +     +++ + D  I +  +   D            Y               + ++
Sbjct: 525 --AASNGAELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYRPVHELPDIRWKNLGDHVS 582

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L +D S    I      +   +E+  L V++ G  K+++  +++   R  K + A  + 
Sbjct: 583 HLASDLSAGEEIRSAIAIQTFTEEKRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIKLK 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E   L++V  ++  + I L +  G  +R P+ EI  +   T GV   +  +D+ V+ 
Sbjct: 642 DNDE---LLSVNLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQDDIVIG 698

Query: 894 VERIRESE 901
              +  ++
Sbjct: 699 GVILAPND 706


>gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
 gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
          Length = 817

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 293/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  +L  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESENLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +  ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/543 (13%), Positives = 174/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                     I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKESEN----------------LIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVV 649
             S+   ++      L           L  I    +  +I T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + D D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--VNGLLVLADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 25/284 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L       I  I    +  S+   L+ V   +   V++N  S  +   +     +K+
Sbjct: 436 ITELQKESENLIAQITELNKILSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKI 495

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
           D++          QE+ I+  T+ G   R  + +              I + +GD ++  
Sbjct: 496 DTQ------VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYS 543

Query: 737 ------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    +++   A+   R  +       +      ++ I++L  D S+      ++ 
Sbjct: 544 GELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKI 603

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVND 849
           Q     E+  + +S+ G  K+T   +F        + +    +    +    V +     
Sbjct: 604 Q----AEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQP 659

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + LV+ +G  +R P+ ++ +      GV   +    +R+V+
Sbjct: 660 GLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVN 703


>gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 822

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 283/789 (35%), Positives = 438/789 (55%), Gaps = 48/789 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 183 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 243 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA+N  +P R  L   L +++AF++EV+ RR
Sbjct: 303 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAINDQRPVRVGLKHYLASYLAFQKEVITRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 363 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 410 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I + +    ++    +  ED++V VS  GY+KR
Sbjct: 457 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G  G     +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 517 SSIRSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E I   M     +        +FAT  G V+++ LSD+   +R
Sbjct: 572 WKDTGEHLSQTIDLDDDEVIVKAMLL---DKLDLPGTFIFATSDGQVKQSALSDYQPGSR 628

Query: 671 S---GKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  + V   R + GV
Sbjct: 629 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTA-GV 687

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R I+L + DQ++ +++    D      +  +    A + +   D E     +  + V   
Sbjct: 688 RAINLKEDDQLVGISLAGDGD-----HLGLVTQRGAFKEMAVSDLEVGARARRGNLVLHR 742

Query: 785 ISEERCQEL 793
           + +   Q +
Sbjct: 743 LKKNPHQVV 751



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E     +      +  +   +V  +  G ++R+ +        S      L   D  L +
Sbjct: 485 EDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI---RSFKASEVGDNGLREDDYPLLL 541

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E  T  + + + T  G+ +  P+  +   A     G    + I L   + ++   ++   
Sbjct: 542 EQTTTLSHLYMFTNQGRFIYRPVHEL-TDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKL 600

Query: 745 DADYDERICY----MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           D             +K  +          +   S+         +      E +   Q +
Sbjct: 601 DLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFEPEQAGQSV 660

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S +G+  R +  D  ++     G+RA ++ + ++   LV +    D D + LV+ +G
Sbjct: 661 LAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQ---LVGISLAGDGDHLGLVTQRG 717

Query: 861 TLIRVPVNEIRIASRATKGVVIF-STAKD 888
               + V+++ + +RA +G ++     K+
Sbjct: 718 AFKEMAVSDLEVGARARRGNLVLHRLKKN 746



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL     +    T   E+ I+L +  G   R  I +        
Sbjct: 474 KEFANPRRTQIEDTVQKLTVDTRV----TVADEDVIVLVSAAGYIKRSSIRSF------K 523

Query: 721 SVGVRGISLAKGDQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +  V    L + D    +     + H     ++     + +         DT E  S   
Sbjct: 524 ASEVGDNGLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTI 583

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKIN 836
           D   +  I +    +        +  +  G  K+++  D++  +R       A  + +  
Sbjct: 584 DLDDDEVIVKAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGA 643

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++    P      ++ +S +G  +R  V ++ +    T GV   +  +D+++V +
Sbjct: 644 QVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGI 701


>gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
 gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
          Length = 825

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 282/789 (35%), Positives = 438/789 (55%), Gaps = 48/789 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 6   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 66  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 126 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 186 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 246 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RR
Sbjct: 306 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 366 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 413 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I + +    ++    +  ED++V VS  GY+KR
Sbjct: 460 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G  G     +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 520 SSIRSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E I   M     +        +FAT  G V+++ LSD+   +R
Sbjct: 575 WKDTGEHLSQTIDLDDDEVIVKAMLL---DKLDLPGTFIFATSDGQVKQSALSDYQPGSR 631

Query: 671 S---GKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  + V   R + GV
Sbjct: 632 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTA-GV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R I+L + DQ++ +++    D      +  +    A + +   D E     +  + V   
Sbjct: 691 RAINLKEDDQLVGISLAGDGD-----HLGLVTQRGAFKEMAVSDLEVGARARRGNLVLHR 745

Query: 785 ISEERCQEL 793
           + +   Q +
Sbjct: 746 LKKNPHQVV 754



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E     +      +  +   +V  +  G ++R+ +        S      L   D  L +
Sbjct: 488 EDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI---RSFKASEVGDNGLREDDYPLLL 544

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E  T  + + + T  G+ +  P+  +   A     G    + I L   + ++   ++   
Sbjct: 545 EQTTTLSHLYMFTNQGRFIYRPVHEL-TDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKL 603

Query: 745 DADYDERICY----MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           D             +K  +          +   S+         +      E +   Q +
Sbjct: 604 DLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFEPEQAGQSV 663

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S +G+  R +  D  ++     G+RA ++ + ++   LV +    D D + LV+ +G
Sbjct: 664 LAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQ---LVGISLAGDGDHLGLVTQRG 720

Query: 861 TLIRVPVNEIRIASRATKGVVIF-STAKD 888
               + V+++ + +RA +G ++     K+
Sbjct: 721 AFKEMAVSDLEVGARARRGNLVLHRLKKN 749



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL     +    T   E+ I+L +  G   R  I +        
Sbjct: 477 KEFANPRRTQIEDTVQKLTVDTRV----TVADEDVIVLVSAAGYIKRSSIRSF------K 526

Query: 721 SVGVRGISLAKGDQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +  V    L + D    +     + H     ++     + +         DT E  S   
Sbjct: 527 ASEVGDNGLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTI 586

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKIN 836
           D   +  I +    +        +  +  G  K+++  D++  +R       A  + +  
Sbjct: 587 DLDDDEVIVKAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGA 646

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++    P      ++ +S +G  +R  V ++ +    T GV   +  +D+++V +
Sbjct: 647 QVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGI 704


>gi|16800394|ref|NP_470662.1| DNA topoisomerase IV subunit A [Listeria innocua Clip11262]
 gi|16413799|emb|CAC96557.1| parC [Listeria innocua Clip11262]
          Length = 818

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 283/882 (32%), Positives = 469/882 (53%), Gaps = 91/882 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++E   L  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISILEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S++ F++ G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLILFTNKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     +S       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIAI---DSFTEQKRFLFVTKNGMTKQSTITNYKPQ 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             S  +       DE+L+V       DI L T+ G  +R+PI+ I     R + GV+ I+
Sbjct: 630 RYSKSMMAIKLKEDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKAIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD VI   ++   D                                           
Sbjct: 689 LKQGDVVIGGVVLTPND------------------------------------------- 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + IL  +++G  K+  + +F   +R+ +G+      K N     + +   +
Sbjct: 706 --------NKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLTLAD 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
             D + + +++  ++ + V  +R+  R + G  +   T + E
Sbjct: 757 SKDHLFIETNREQIVEIDVANLRVTDRYSNGSFVLDETMEGE 798



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           S+   I +  K A + + + EI  ++         E+ I+  TK G   R    +     
Sbjct: 469 SELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSY---- 524

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
              +     +++ + D  I +  +   D+           Y               + ++
Sbjct: 525 --AASNGAELAMKEADHAIFIQKMNSLDSLILFTNKGNFIYRPVHELPDIRWKNLGDHVS 582

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L +D S    I      +   +++  L V++ G  K+++  +++   R  K + A  + 
Sbjct: 583 HLASDLSAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSTITNYKPQ-RYSKSMMAIKLK 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +      L+ V+ ++  + I L +  G  +R P+ EI  +   T GV   +  + + V+ 
Sbjct: 642 EDE----LLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIG 697


>gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716]
          Length = 822

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 282/789 (35%), Positives = 438/789 (55%), Gaps = 48/789 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 183 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 243 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RR
Sbjct: 303 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 363 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 410 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I + +    ++    +  ED++V VS  GY+KR
Sbjct: 457 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G  G     +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 517 SSIRSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E I   M     +        +FAT  G V+++ LSD+   +R
Sbjct: 572 WKDTGEHLSQTIDLDDDEVIVKAMLL---DKLDLPGTFIFATSDGQVKQSALSDYQPGSR 628

Query: 671 S---GKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  + V   R + GV
Sbjct: 629 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTA-GV 687

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R I+L + DQ++ +++    D      +  +    A + +   D E     +  + V   
Sbjct: 688 RAINLKEDDQLVGISLAGDGD-----HLGLVTQRGAFKEMAVSDLEVGARARRGNLVLHR 742

Query: 785 ISEERCQEL 793
           + +   Q +
Sbjct: 743 LKKNPHQVV 751



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E     +      +  +   +V  +  G ++R+ +        S      L   D  L +
Sbjct: 485 EDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI---RSFKASEVGDNGLREDDYPLLL 541

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E  T  + + + T  G+ +  P+  +   A     G    + I L   + ++   ++   
Sbjct: 542 EQTTTLSHLYMFTNQGRFIYRPVHEL-TDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKL 600

Query: 745 DADYDERICY----MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           D             +K  +          +   S+         +      E +   Q +
Sbjct: 601 DLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFEPEQAGQSV 660

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S +G+  R +  D  ++     G+RA ++ + ++   LV +    D D + LV+ +G
Sbjct: 661 LAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQ---LVGISLAGDGDHLGLVTQRG 717

Query: 861 TLIRVPVNEIRIASRATKGVVIF-STAKD 888
               + V+++ + +RA +G ++     K+
Sbjct: 718 AFKEMAVSDLEVGARARRGNLVLHRLKKN 746



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 82/238 (34%), Gaps = 16/238 (6%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL     +    T   E+ I+L +  G   R  I +        
Sbjct: 474 KEFANPRRTQIEDTVQKLTVDTRV----TVADEDVIVLVSAAGYIKRSSIRSF------K 523

Query: 721 SVGVRGISLAKGDQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +  V    L + D    +     + H     ++     + +         DT E  S   
Sbjct: 524 ASEVGDNGLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTI 583

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKIN 836
           D   +  I +    +        +  +  G  K+++  D++  +R       A  + +  
Sbjct: 584 DLDDDEVIVKAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGA 643

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++    P      ++ +S +G  +R  V ++ +    T GV   +  +D+++V +
Sbjct: 644 QVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGI 701


>gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 825

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 281/789 (35%), Positives = 438/789 (55%), Gaps = 48/789 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 6   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 66  KSAKAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 126 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 186 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 246 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RR
Sbjct: 306 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 366 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 413 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I + +    ++    +  E+++V VS  GY+KR
Sbjct: 460 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEEVIVLVSAAGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G  G     +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 520 SSIRSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E I   M     +        +FAT  G V+++ LSD+   +R
Sbjct: 575 WKDTGEHLSQTIDLDDDEVIVKAMLL---DKLDLPGTFIFATSDGQVKQSALSDYQPGSR 631

Query: 671 S---GKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  + V   R + GV
Sbjct: 632 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTA-GV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R I+L + DQ++ +++    D      +  +    A + +   D E     +  + V   
Sbjct: 691 RAINLKEDDQLVGISLAGDGD-----HLGLVTQRGAFKEMAVSDLEVGARARRGNLVLHR 745

Query: 785 ISEERCQEL 793
           + +   Q +
Sbjct: 746 LKKNPHQVV 754



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E     +      +  +   +V  +  G ++R+ +        S      L   D  L +
Sbjct: 488 EDTVQKLTVDTRVTVADEEVIVLVSAAGYIKRSSI---RSFKASEVGDNGLREDDYPLLL 544

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E  T  + + + T  G+ +  P+  +   A     G    + I L   + ++   ++   
Sbjct: 545 EQTTTLSHLYMFTNQGRFIYRPVHEL-TDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKL 603

Query: 745 DADYDERICY----MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           D             +K  +          +   S+         +      E +   Q +
Sbjct: 604 DLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVDYFEPEQAGQSV 663

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S +G+  R +  D  ++     G+RA ++ + ++   LV +    D D + LV+ +G
Sbjct: 664 LAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQ---LVGISLAGDGDHLGLVTQRG 720

Query: 861 TLIRVPVNEIRIASRATKGVVIF-STAKD 888
               + V+++ + +RA +G ++     K+
Sbjct: 721 AFKEMAVSDLEVGARARRGNLVLHRLKKN 749



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 16/238 (6%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL     +    T   E  I+L +  G   R  I +        
Sbjct: 477 KEFANPRRTQIEDTVQKLTVDTRV----TVADEEVIVLVSAAGYIKRSSIRSF------K 526

Query: 721 SVGVRGISLAKGDQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +  V    L + D    +     + H     ++     + +         DT E  S   
Sbjct: 527 ASEVGDNGLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTI 586

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKIN 836
           D   +  I +    +        +  +  G  K+++  D++  +R       A  + +  
Sbjct: 587 DLDDDEVIVKAMLLDKLDLPGTFIFATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGA 646

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++    P      ++ +S +G  +R  V ++ +    T GV   +  +D+++V +
Sbjct: 647 QVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPVTGVRTAGVRAINLKEDDQLVGI 704


>gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175]
 gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
 gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
          Length = 819

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 292/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   +++  +                                          
Sbjct: 689 NLKQDDIVIGGIVLMPNE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + +
Sbjct: 816 AKD 818


>gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 807

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|227535107|ref|ZP_03965156.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187248|gb|EEI67315.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 814

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 294/901 (32%), Positives = 455/901 (50%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I      L++     +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGSDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I+  +  T  Q+ D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTT---------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +  ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 708 -----------AKVGILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPVQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 807

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +     E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEEEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes str. 4b
           F2365]
 gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 819

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 291/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+L+V       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   +++  +                                          
Sbjct: 689 NLKQDDIVIGGIVLMPNE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + +
Sbjct: 816 AKD 818


>gi|229151791|ref|ZP_04279990.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
 gi|228631604|gb|EEK88234.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
          Length = 807

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD     
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGD----- 536

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----- 793
            ++   D +  E +    +      L   +  +I        V   +S +R + +     
Sbjct: 537 ILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDIRWKDLGQHVANIVSLDRDETIIWATV 596

Query: 794 ----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               + +++FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  + 
Sbjct: 597 VPNFEEEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDG 652

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 653 TSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
 gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
          Length = 873

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 310/942 (32%), Positives = 476/942 (50%), Gaps = 144/942 (15%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + S+  EMQ SYL YA++VI+GRA+PD+RDG KPVHRRI++ M ++G+  ++ + KC
Sbjct: 11  KVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPFRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDA+ RM Q++S R  L++G GNFGS+D DP AA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRYTESR 130

Query: 135 LQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       LL  + +  VDF  N+DGS QEP VL A+ P +L+NG  GIAVGMATN+P H
Sbjct: 131 LASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNVPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNP+I    L E+I GPDFPTG  I+   GI + Y  GRGSI +RGV
Sbjct: 191 NLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGSIPMRGV 250

Query: 254 SHIEKTSGDR-----EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+    R       IVVTE+P+QVNKA  +EK A+LV   +I  IADLRDESDR G 
Sbjct: 251 ATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDRSGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A   V+L+ LYR T L S F   M+AL   +P++ +L  +L+ F+ FREE 
Sbjct: 311 RVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFLNFREET 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R   + L  A+ R+H++ GL  A+  LD V+ I+R +P+  TA+    +         
Sbjct: 371 LTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQE--------- 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            ++ LSE Q  AIL + + RLTGL +  +  E   L  +I+E  
Sbjct: 422 -----------------SLGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELE 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE----------------------GLLD 526
           ++L  R +LL  +K+EL ++K + + PRRTRI++                      G  +
Sbjct: 465 NLLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKE 524

Query: 527 ME----------------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           ++                      +      E +V+  SH GYV+R+P   +   +   K
Sbjct: 525 IDIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKK 584

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA------RGKAL 618
               +    EDF T++   +T  +++  +  G  Y  KV  +P  S ++      +G  L
Sbjct: 585 SHITME-NSEDFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPL 643

Query: 619 INILSLNQGERIT-----TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           + +L  +  + IT      I+       +  N  ++  T++G ++R  LSD   +   G 
Sbjct: 644 VTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGV 703

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKG 732
             +KL   DE+  V        ++L T  G+ +R  I   +    GR + G +   L K 
Sbjct: 704 TVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRKQ 763

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++++                                                     C  
Sbjct: 764 EELVG----------------------------------------------------CVT 771

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L +    +L VS+  +GK+      R++NR G G      ++ ++I  L  +   + N  
Sbjct: 772 LDIGSNLLL-VSQHSYGKQIPVTALRVANRGGIGQNVFQFTRQDDI--LAGIVASSSNVL 828

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + +++  G +  +  + +++  +   G  +      E+++ V
Sbjct: 829 VQVLTTDGRVFGMIADRVKVDQQDDHGHRLLKLGAKEKIIKV 870



 Score = 42.6 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV-LFFSSLGFVYK 600
           VS   Y K++P++  R   RGG G++      +D +    + S+   +    ++ G V+ 
Sbjct: 781 VSQHSYGKQIPVTALRVANRGGIGQNVFQFTRQDDILAGIVASSSNVLVQVLTTDGRVFG 840

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
               R+ +      G     +L L   E+I  ++
Sbjct: 841 MIADRVKVDQQDDHGH---RLLKLGAKEKIIKVV 871


>gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
 gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
          Length = 818

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 459/884 (51%), Gaps = 90/884 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G    K++ 
Sbjct: 4   QQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ R++QDW LR +L+E  GN GS+DGDP AA RYTE
Sbjct: 64  KSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL DL K TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT IPT
Sbjct: 124 ARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +  ID+P   +  LM+ ++GPDFPTGA+I G   ++ AY TG+G +V+R 
Sbjct: 184 HNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGAIIQGIDELEQAYETGKGKVVVRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G + QIVVTEIPY+VNKA +++KI E+   K+I  IA++RDESDR G ++VI
Sbjct: 244 KTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ ILN L + T LQ  ++ NMVA++  +P +  L  IL +++A ++EV+ +R
Sbjct: 304 ELKKEANAEGILNYLLKNTELQINYNFNMVAIDARRPMQVGLKKILDSYIAHQKEVITKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA+DR H++ GL  A++ LDEV+ +IR S + + A+ +L++             
Sbjct: 364 TQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVE------------- 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T   +  Q  AI+ L+L RLT      ++ E   L   +     IL 
Sbjct: 411 -------------TYDFTMTQAEAIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILK 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550
           S   LL ++KQEL  +K +  TPR T I   + +  +E E  I  E++ V  +  GY KR
Sbjct: 458 SEKTLLQVMKQELRELKKKYATPRLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V    + +      G     +R+ D V  +  VST  S++ F+S G      V  +P   
Sbjct: 518 VSPRSFASSAPEENG-----LREGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAK 572

Query: 611 PQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            +  G  L   +SL   E I   ++   +   ++ +  VVF TK G V++  +++F    
Sbjct: 573 WKDVGHHLSQSISLATNEIILAGMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEFNTYR 632

Query: 670 ----RSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               R+        + DE++++E    QE +I + T  G  +R+ +S + V     + GV
Sbjct: 633 GYKTRTSNAIKLKTATDEVVAIELVPNQEQEIFIVTHCGFGLRYELSEVPVVGT-VASGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L K D V    +                                            
Sbjct: 692 KAINLRKDDFVAGAMVYSPESKVVSA---------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                              +++G  KR +  +  +  R+ +G+      K N    +   
Sbjct: 718 ----------------FLATQRGSVKRFNVLEVSMLTRAKRGLMVLRELKNNPHRVVYLD 761

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++   + ++VS  G +  +   ++ +  R + G  + + A  
Sbjct: 762 GNISSKQEYVIVSTNGEMKEIRPMDLSLVDRTSNGSALLNDADG 805



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 85/214 (39%), Gaps = 17/214 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E   ++ TK G   R    +    A   +       L +GD+V+ +  V   D+  
Sbjct: 499 LIPEEEVYVVATKQGYYKRVSPRSFASSAPEENG------LREGDEVLLVQKVSTLDSLV 552

Query: 747 ------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                 +Y     +    +  + +    ++ I+   N+  + G + E+   +   ++  +
Sbjct: 553 LFTSKGNYLHLPVHEIPEAKWKDVGHHLSQSISLATNEIILAGMVKEKDSNDAY-QDWTV 611

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDK 859
           +  +++G  K+T+  +F  + R  K   +  +        +VA+  V N   +I +V+  
Sbjct: 612 VFFTKEGLVKQTAMNEFN-TYRGYKTRTSNAIKLKTATDEVVAIELVPNQEQEIFIVTHC 670

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           G  +R  ++E+ +      GV   +  KD+ V  
Sbjct: 671 GFGLRYELSEVPVVGTVASGVKAINLRKDDFVAG 704


>gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220]
          Length = 819

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 291/903 (32%), Positives = 483/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I + +     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL   DE+L+V       DI L TK G  +R+ I+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   +++  +                                          
Sbjct: 689 NLKQDDIVIGGIVLMPNE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D ++
Sbjct: 757 DNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSD 815

Query: 908 STE 910
           + +
Sbjct: 816 AKD 818


>gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
 gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
          Length = 807

 Score =  573 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|228902096|ref|ZP_04066260.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
 gi|228966491|ref|ZP_04127544.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793213|gb|EEM40763.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857522|gb|EEN02018.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
          Length = 807

 Score =  573 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 295/884 (33%), Positives = 466/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F+S G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I  +   P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWVTVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++  +  +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKGDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|218898690|ref|YP_002447101.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
 gi|218545498|gb|ACK97892.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
          Length = 807

 Score =  573 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 295/884 (33%), Positives = 466/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F+S G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I  +   P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWVTVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++  +  +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKGDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 800

 Score =  573 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 276/882 (31%), Positives = 465/882 (52%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGIIQGVDGIKKAYESGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E + L   IK+  +IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLTVIKDELNEIKKKFKVDRLSAIEAEISEIKIDKEVMVPSEEVILSITRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E+   ++    ++   ++ + V AT++G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPIDEDEQ---VINVYNEKDFNHDAFYVMATRNGMIKKSSVSQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + MK+  +DEI++V     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LVGMKVKDKDEIINVVRLESDQLITVITNKGMSLTYSTAELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEEVNESDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR S    + + R+ +GI      K N    +V    V +N +
Sbjct: 704 -------IIMVTQRGAIKRISYKVLQAAKRAQRGITLLKELKKNPH-RIVDAAVVRENQE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +          + ++ ++ + T G  I    +  +VVS+
Sbjct: 756 TYTIFSNSNEESGSITDVHLSEQYTNGSFIIDVDEFGQVVSM 797



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 117/282 (41%), Gaps = 15/282 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSITRHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKY 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           +    ++ +L+ T  G+ +  P+  +        +G    + + + + +QVI+  +    
Sbjct: 541 QEVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHVSQIVPIDEDEQVIN--VYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK-EQFILTV 803
           D ++D            ++      +     K    ++    +E    ++L+ +Q I  +
Sbjct: 598 DFNHDAFYVMATRNGMIKKSSVSQFKTTRFNKPLVGMKVKDKDEIINVVRLESDQLITVI 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    VN++D II+V+ +G + 
Sbjct: 658 TNKGMSLTYSTAELSDTGLRAAGVKSINLKDED---YVVMTEEVNESDSIIMVTQRGAIK 714

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIV 903
           R+    ++ A RA +G+ +    K    R+V    +RE++  
Sbjct: 715 RISYKVLQAAKRAQRGITLLKELKKNPHRIVDAAVVRENQET 756


>gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames]
 gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne]
 gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L]
 gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055]
 gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B]
 gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum]
 gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia
           94]
 gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI]
 gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames]
 gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne]
 gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L]
 gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 807

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|313123650|ref|YP_004033909.1| DNA topoisomerase iv subunit a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280213|gb|ADQ60932.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 827

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 278/889 (31%), Positives = 449/889 (50%), Gaps = 96/889 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDTSLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +     +++++  I  E + V +S  GY
Sbjct: 456 ILADPKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNG-----LPETDQVVYEGSLSTLTNLYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    NL  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALDD--PNLAFLLATNDGFIKQVALADLQP 628

Query: 668 IN---RSGKIAMKLDSRD-EILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +++V+    +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIDEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 688 AGVKSINLKEDDYVVACLVTDPQYEDLLK------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+++G  K+        ++R+ +G+      K  +   +
Sbjct: 717 ------------------VGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKT-KPHRI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           VA+     N ++IL++      +IR   ++  +  R + G  +     D
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTD 804



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 106/311 (34%), Gaps = 19/311 (6%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINI-LSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +     K  V        QA  +A++++ L       +  +    E+ +S    Y     
Sbjct: 401 NKADAKKNLVAEFAFTDRQA--EAIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEKILA 458

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVR 707
               +++  + +   + +      + +  DE   VE       T+E+  +L ++ G   R
Sbjct: 459 DPKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKR 518

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             + + +        G  G  L + DQV+    +      Y               L+  
Sbjct: 519 SSMRSFQS----TEAGDNG--LPETDQVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVES 572

Query: 768 D----TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                 + ++     ++ E  I     + L       L  +  GF K+ +  D + +   
Sbjct: 573 KWKDVGQHLSQELGLAADESIIRVFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTY 632

Query: 824 -GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             + I A  +   +     V +   ++  +I L +++   ++  ++E+        GV  
Sbjct: 633 KSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVKS 692

Query: 883 FSTAKDERVVS 893
            +  +D+ VV+
Sbjct: 693 INLKEDDYVVA 703


>gi|218234483|ref|YP_002368409.1| DNA topoisomerase IV subunit A [Bacillus cereus B4264]
 gi|218162440|gb|ACK62432.1| DNA topoisomerase IV, A subunit [Bacillus cereus B4264]
          Length = 807

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +LL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKKLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAILQSEKKLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
 gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
          Length = 817

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 291/899 (32%), Positives = 473/899 (52%), Gaps = 98/899 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E++  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G    K 
Sbjct: 2   EKKHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKS 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TV+F  N+D + +EP VL + +PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+DG + +ID+PD  L+ LM  I GPDFPTG ++ G   IK AY TG+G +++
Sbjct: 182 PTHNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGILQGADEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++QIV++EIPY+VNKA +++++ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++  +P++  L  +L ++VA R+ V++
Sbjct: 302 VVELKKEVNAEGILNYLFKNTDLQVNYNFNMVAIDQMRPKQVGLKQMLSSYVAHRQSVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y L KA  R H++ GL  A++ LDEV++ IR S +   A+  L             
Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKNNL------------- 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 409 -------------ILAHAFTQEQAEAIVTLQLYRLTNTDITQLQQEAEELLATIAELQKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           +   + L  ++K+EL  VK +  + R T I   + +  ++ E  + +ED++V V+  GYV
Sbjct: 456 IQDSTELFKVMKKELREVKKQYQSERLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A      G     M++ D V     ++T   +L  +  G +    V  LP 
Sbjct: 516 KRSSLRSYSASNNEEAG-----MKESDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ L   L+ L   E I T++P+ +  ++     ++  T+ G ++R KLS+F  
Sbjct: 571 LRWKDVGEHLSQALTTLKIEENILTVLPYKQLSTTQE---LLILTQAGMIKRTKLSEFTP 627

Query: 668 IN----RSGKIAMKLDSRDEILSVETCTQE----NDILLTTKLGQCVRFPISAIRVFAGR 719
                 R           D+++SV     +     DI + +     +R+ ++ + V   R
Sbjct: 628 WRTYKTRPLPFITLKQEEDKVISVMVIEPQEIATQDIFMVSNRAYGLRYAVTDVPVVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ ++L + D  +  AI++H D D                                
Sbjct: 688 -AAGVKAMNLKEDDATVVQAILVHTDGDTP------------------------------ 716

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               ++ ++++G  KR  + +   ++R+ +GI    + ++    
Sbjct: 717 --------------------VVIITQRGAAKRMLAQELPQTSRAQRGI--MVLRELKNHP 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +    + D  +++L + KG    V  N+  IA R + G  +        +VSV+ + 
Sbjct: 755 HRIIYMGLGDETELLLTNQKGDKKEVQANQFPIADRTSNGSFVLDEKSGGTIVSVDELP 813



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 108/297 (36%), Gaps = 29/297 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E + TI    +       L+ V   +   V++   S+ + +  +    + +
Sbjct: 435 ITQLQQEAEELLATIAELQKIIQDSTELFKVMKKELREVKKQYQSERLTVIEAEVTELTI 494

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
           D+           QE+ +++ T+ G   R  + +        +       + + D V+  
Sbjct: 495 DTE------ILVAQEDVMVVVTREGYVKRSSLRSYSASNNEEAG------MKESDVVVYK 542

Query: 737 ------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    +++    +   R  +       + +    ++ +T+LK + ++   +  ++ 
Sbjct: 543 GQLNTLDHLLLVTDKGNMIYRPVHELPDLRWKDVGEHLSQALTTLKIEENILTVLPYKQL 602

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +++ G  KRT   +F    R+ K      ++   E   +++V  +   
Sbjct: 603 ----STTQELLILTQAGMIKRTKLSEFTPW-RTYKTRPLPFITLKQEEDKVISVMVIEPQ 657

Query: 851 D----QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +     I +VS++   +R  V ++ +      GV   +  +D+  V    +  ++  
Sbjct: 658 EIATQDIFMVSNRAYGLRYAVTDVPVVGPRAAGVKAMNLKEDDATVVQAILVHTDGD 714


>gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 820

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 291/890 (32%), Positives = 472/890 (53%), Gaps = 97/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHRSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG V +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQ---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 412 ----------------HGFTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L+  S LL +IK+EL  +K +  TPR T I   + ++  E +  + +E++VVTV+  GYV
Sbjct: 456 LNEESELLKVIKKELREIKKKYSTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L Q E I  +  + E +   N    V  +K+G +++ ++++F  
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEFEP 627

Query: 668 IN----RSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                 R   I    D  DE+++V      +E D+ L + L   +R+ ++ +    G  +
Sbjct: 628 WRTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEV-PVVGPKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L   D +I+  +V                                        
Sbjct: 687 AGVKAMNLKADDYLINGLLVYSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ ++++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVLITQRGAAKRMLAQEITQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V      +N Q+++ + KG    V  N+I I  R + G  I       ++
Sbjct: 754 VVYMGNGENQQLLVTNQKGQAFEVITNQIPINDRTSNGSFIMDEKTGGQI 803



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 83/216 (38%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE  ++  T+ G   R  + +        +     I + +GD ++           
Sbjct: 498 VLVAQEEVVVTVTRDGYVKRSSLRSY------GASKPEEIGMKEGDSLLYSNQMNTLDHL 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++    +   R  +       + L    ++ + +L  D  + G  +    +E+   + F
Sbjct: 552 LLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVFA---YKEIDPLKNF 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVS 857
           +L +S+ G  K+T   +F    R+ K    T +   +E   LV VF  +  +   + LVS
Sbjct: 609 VL-ISKNGMIKQTRMTEFEPW-RTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVS 666

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                +R  +NE+ +      GV   +   D+ +++
Sbjct: 667 HLAFGLRYSLNEVPVVGPKAAGVKAMNLKADDYLIN 702


>gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
 gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
          Length = 807

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   +L
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 95/283 (33%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +     E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEEEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
 gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
          Length = 733

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 312/756 (41%), Positives = 460/756 (60%), Gaps = 34/756 (4%)

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ N
Sbjct: 1   MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    L
Sbjct: 61  YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R  + IE TS  +E+IVVTE PY VN
Sbjct: 121 MEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVN 180

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K  + E I  L +EKRI  I  +RDES R+G R VIE++R ASA+VILN L++ TSLQ+ 
Sbjct: 181 KTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVRRDASANVILNNLFKLTSLQTN 240

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           FS NM+A+    P+  +L  I+  ++  ++EV+VRRT++   KA  RAH+L GL +A+ +
Sbjct: 241 FSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVALDH 300

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+ IIR S     A+ ELM R                            LSE Q++A
Sbjct: 301 LDEVITIIRNSETDTIAQAELMSR--------------------------FELSERQSQA 334

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL RD I++E N L   I +  DIL+   R++ IIK+E+  VK +    R
Sbjct: 335 ILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADAR 394

Query: 517 RTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RT + +  +L +EDED I  ED+++T+S+ GY+KR+    +RAQ+RGG+G  G  + ++D
Sbjct: 395 RTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDD 454

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           FV +L   STH +VLFF++LG VY+ K + +P     A+G  ++N+L L++GE I TI+ 
Sbjct: 455 FVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIIN 514

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
               +    N Y  F T+ G V+R  +S+F  I ++G  A+ L   DE+++V    +  D
Sbjct: 515 AR--KEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENED 572

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICY 754
           +++ T+ G  VRF ++A+R    R + GVRG++L +GD+V+  + IV   +        Y
Sbjct: 573 VIIGTRTGYSVRFKVNAVRNMG-RTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGY 631

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            K   A      G   +     N ++  G ++           + I+ +++ G   RT+ 
Sbjct: 632 GKRTEASEYPTKGRGGKGIKTANITAKNGPLAR---LVTINGNEDIMVITDTGVIIRTNV 688

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +   + RS  G++   + +  +I  +  V    ++
Sbjct: 689 ANISQTGRSTMGVKVMRLDQEAKIVTVALVEQEIED 724


>gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642]
 gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642]
          Length = 775

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 309/812 (38%), Positives = 460/812 (56%), Gaps = 51/812 (6%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  N+ Y K ARI G
Sbjct: 6   EIAEEIKTSYLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+AA+Y+AL RMAQD+++R  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 66  DVLGKYHPHGDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDTVDF PN+D + +EP VL A +PN+L NG  GIAVGMATNIP HNL E+ 
Sbjct: 126 EEMLKDIDKDTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREIC 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V  I NPD+ +  LM+ ++GPDFPTG +I+G  GI  AY TGRG I++RG    E  
Sbjct: 186 DAIVEYIRNPDVTVRELMKHVKGPDFPTGGIIVGVEGIIKAYETGRGRIILRGKVEFED- 244

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 I++ E+PY V K+ ++EKIA LV+E ++ ++  +RDESDR+G RVV+ELK G  
Sbjct: 245 ----NAIIIREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKSGVD 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +++L +LY YT LQ  +S+ ++AL   +P+  TL  ++  +V  R EVV RRT Y L K
Sbjct: 301 KNLVLKKLYLYTPLQITYSIMLLALVNTQPKILTLKDLIAEYVNHRREVVRRRTAYELEK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R HVL G  I ++NLDE + +IR S +P  A+ +L+ R                   
Sbjct: 361 AEERIHVLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINR------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE Q  A+L++RL +LT +  D I  E   L  +IKE   ILSS+ ++  
Sbjct: 402 -------FSLSEKQADAVLQMRLQKLTSMEIDGILKEYEELDKKIKELKSILSSQEKMDE 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II +EL  +K      RRT+IVE   ++ + D I  E+ V+ ++  GY KR+  S +R Q
Sbjct: 455 IIIKELEEIKKNYGDDRRTKIVEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRVQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG G SG+ +RD D+   +  V +   +L F+  G  +    + +P      +G +L 
Sbjct: 515 RRGGVGTSGISLRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLK 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
             L +     I  I+PF           VV  T+ G +++  +++F    RSG +A    
Sbjct: 575 RFLRIED--EIVGIVPF-------GKGSVVILTESGYIKKVNIAEFENAKRSGILASP-- 623

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              E ++        ++++ T+ G+ VRF    +  +  RN+ GV+ +SL  GD++  M 
Sbjct: 624 ---ESVAFVKKLDGKEVIIATENGRLVRFKAEEVPEY-KRNARGVKAVSL-DGDKIAWMD 678

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +             Y K    +   ++G   +  +    +   G +         +K   
Sbjct: 679 VGSEDLILTLTENGYGKMTKTEEFRLTGRGAKGVTAHKVNEKTGKLVFAEF----VKSDK 734

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           ++ +S+ G      +    +  R+  G+  + 
Sbjct: 735 LMVISKDGNVIVVETKQIPVMGRNAVGVAVSK 766



 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 122/300 (40%), Gaps = 50/300 (16%)

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD 682
            + E IT +    ++E+      V+  TK G  +R   SDF    R G     + L   D
Sbjct: 477 EKYEEITEVDTIKDEEN------VLIITKDGYAKRLDESDFRVQRRGGVGTSGISLRDGD 530

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS-LAKGDQVISM--- 738
               +      + ILL TK G+        I     R+  GV     L   D+++ +   
Sbjct: 531 YAAYIVKVRSLDRILLFTKDGKAFSINAYEI-PKQERSGKGVSLKRFLRIEDEIVGIVPF 589

Query: 739 ---AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
              ++V+  ++ Y +++   +  +A+R  I    E +  +K     E  I+ E  + ++ 
Sbjct: 590 GKGSVVILTESGYIKKVNIAEFENAKRSGILASPESVAFVKKLDGKEVIIATENGRLVRF 649

Query: 796 K-------------------------------EQFILTVSEKGFGKRTSSYDFRISNRSG 824
           K                               E  ILT++E G+GK T + +FR++ R  
Sbjct: 650 KAEEVPEYKRNARGVKAVSLDGDKIAWMDVGSEDLILTLTENGYGKMTKTEEFRLTGRGA 709

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG+ A  V++  + G LV    V  +D+++++S  G +I V   +I +  R   GV +  
Sbjct: 710 KGVTAHKVNE--KTGKLVFAEFVK-SDKLMVISKDGNVIVVETKQIPVMGRNAVGVAVSK 766



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R  KI  K +   EI  V+T   E ++L+ TK G   R   S  RV   R  VG  GISL
Sbjct: 471 RRTKIVEKYE---EITEVDTIKDEENVLIITKDGYAKRLDESDFRV-QRRGGVGTSGISL 526

Query: 730 AKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             GD    +  V   D       D +   +      ++  SG    +            I
Sbjct: 527 RDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKRF-------LRI 579

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +E    +   +  ++ ++E G+ K+ +  +F  + RSG       V+ + ++       
Sbjct: 580 EDEIVGIVPFGKGSVVILTESGYIKKVNIAEFENAKRSGILASPESVAFVKKL------- 632

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              D  ++I+ ++ G L+R    E+    R  +GV   S    +++  ++   E 
Sbjct: 633 ---DGKEVIIATENGRLVRFKAEEVPEYKRNARGVKAVSLD-GDKIAWMDVGSED 683


>gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1]
 gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1]
          Length = 807

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
 gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
          Length = 835

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/890 (32%), Positives = 459/890 (51%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 20  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 80  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 140 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 200 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 259

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 260 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 319

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 320 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 380 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENL---------------- 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  SL  +I     I+  
Sbjct: 424 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGD 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 474 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 533

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++ G      +  L     
Sbjct: 534 SPRSFNASTVEEVGK-----RDDDELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKW 588

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   L +  Q E I     F E    +  +    AT+ G ++R +  +      
Sbjct: 589 KDIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRT 644

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I++V     E+ I++ TK G  +RF +  + V     + GV+ 
Sbjct: 645 YRSKSTKYAKLKDQDDRIVAVAPVVLED-IMIITKNGYGLRFNVEEVPVVGA-KAAGVKA 702

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GDQV +      A       +  +    + +R++  D    +  K    V   + 
Sbjct: 703 INLKDGDQVAA------AFKSTTPSMYILTQRGSLKRMLQDDIPVTSRAKRGLQVLRELK 756

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    F    +++G     +S +                              
Sbjct: 757 NKPHRVFKAGPVF----TDQGDFDLFTSQE-----------------------------E 783

Query: 847 VNDNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           V + DQI+ ++   G +  + + ++ I+ R + G  +  T  D+ V S  
Sbjct: 784 VAEQDQILQITSTTGQVTEIDLTQLSISERTSNGSFVNDTISDQEVFSAT 833



 Score = 61.9 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 23/223 (10%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E   +  T+ G   R            N+  V  +     D++I     +
Sbjct: 508 EIDTASLIVEEETFVSVTRAGYIKRTS------PRSFNASTVEEVGKRDDDELI----FV 557

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ---- 798
                    + +    +A  R I   T+       +   +   + E+ +E+   E     
Sbjct: 558 EPAKTTQHLLLFTNFGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAEIVDQF 617

Query: 799 ---FILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                   +++G  KR    +     + R  K  +   +   ++   +VAV PV   D I
Sbjct: 618 EGVTYFAATQQGQIKRFERKELSPWRTYR-SKSTKYAKLKDQDDR--IVAVAPVVLED-I 673

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++++  G  +R  V E+ +      GV   +    ++V +  +
Sbjct: 674 MIITKNGYGLRFNVEEVPVVGAKAAGVKAINLKDGDQVAAAFK 716


>gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 807

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|300812416|ref|ZP_07092846.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496583|gb|EFK31675.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 827

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 278/889 (31%), Positives = 449/889 (50%), Gaps = 96/889 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +     +++++  I  E + V +S  GY
Sbjct: 456 ILADPKVLQKEIIKELQAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    NL  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALDD--PNLAFLLATNDGFIKQVALADLQP 628

Query: 668 IN---RSGKIAMKLDSRD-EILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +++V+    +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 688 AGVKSINLKEDDYVVACLVTDPQYEDLLK------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+++G  K+        ++R+ +G+      K  +   +
Sbjct: 717 ------------------VGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKT-KPHRI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           VA+     N ++IL++      +IR   ++  +  R + G  +     D
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTD 804



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 104/311 (33%), Gaps = 19/311 (6%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINI-LSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +     K  V        QA  +A++++ L       +  +    E+ +     Y     
Sbjct: 401 NKADAKKNLVAEFAFTDRQA--EAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILA 458

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVR 707
               +++  + +   + +      + +  DE   VE       T+E+  +L ++ G   R
Sbjct: 459 DPKVLQKEIIKELQAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKR 518

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             + + +        G  G  L + D+V+    +      Y               L+  
Sbjct: 519 SSMRSFQS----TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVES 572

Query: 768 D----TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                 + ++     ++ E  I     + L       L  +  GF K+ +  D + +   
Sbjct: 573 KWKDVGQHLSQELGLAADESIIRVFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTY 632

Query: 824 -GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             + I A  +   +     V +   ++  +I L +++   ++  + E+        GV  
Sbjct: 633 KSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVKS 692

Query: 883 FSTAKDERVVS 893
            +  +D+ VV+
Sbjct: 693 INLKEDDYVVA 703


>gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 819

 Score =  572 bits (1473), Expect = e-160,   Method: Composition-based stats.
 Identities = 291/903 (32%), Positives = 480/903 (53%), Gaps = 92/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K EL  +K +  TPRRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELVAVLKAELSEIKKKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  ++L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNG-----KELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     ++       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIDI---QTFTEEKRFLFVTKNGMTKQSLITNYKPQ 629

Query: 669 NRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  +  +KL   DE+LSV       DI L TK G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKSMMGIKLKDDDELLSVHLIDGTEDIFLATKNGYGLRYPIAEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   ++   D                                          
Sbjct: 689 NLKQDDTVIGGVVLTPND------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------NRHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D + + +    ++ V V  +R+  R + G  +     +   +S+  +   EI D  +
Sbjct: 757 DNKDHLFIETKTEQIVEVDVANLRVTDRYSNGSFVLDETMEGEPISIW-LDIPEIKDTTD 815

Query: 908 STE 910
           S +
Sbjct: 816 SKD 818


>gi|206968720|ref|ZP_03229675.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|229071095|ref|ZP_04204321.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
 gi|229080801|ref|ZP_04213319.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|229179882|ref|ZP_04307228.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|229191681|ref|ZP_04318660.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|206735761|gb|EDZ52919.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|228591843|gb|EEK49683.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|228603563|gb|EEK61038.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|228702535|gb|EEL55003.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|228712035|gb|EEL63984.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
          Length = 807

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 464/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I         E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVQNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 93/279 (33%), Gaps = 20/279 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +            Y+              + + ++ +    E  I     Q  +
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVQNFE 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +++FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +    I+
Sbjct: 602 EEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGTSDIV 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L +     +    +E+        GV   +  +D+ V S
Sbjct: 658 LATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 897

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 309/910 (33%), Positives = 479/910 (52%), Gaps = 72/910 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +  E + SYL+YA++VI+GRA+PD RDGLKPVHRRIL+GM ++G+  +K + 
Sbjct: 32  EEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHR 91

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ ++Y+AL R+AQD+S+   L++G GNFGS+D DPPAA RYTE
Sbjct: 92  KCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTE 151

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL K A    L D+G + V+F   +DGS  EP VL AR PN+L+NG  GIAV +ATN+ 
Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE VD   A+  NPD  LD LM ++  PDFPTG V+  ++G+K  Y TG+G + +R
Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLR 271

Query: 252 GVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G + IE+ S      D++ +V++EIPYQ NKA ++E+IA+ V  + I  I+D+RDESDR 
Sbjct: 272 GRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRD 331

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIE+KRG  A  +L +LY  T L+  F VN VAL   KP    L  IL  F+ FR 
Sbjct: 332 GMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRV 391

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + RRT+++L+KA+DR H++ G +I +A+ D VV+IIR S +  +A ++L +       
Sbjct: 392 DTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRE------- 444

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              +  LS++Q  +IL + L RLTGL  D +  EL  L  +I  
Sbjct: 445 -------------------SHGLSDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAH 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +LS++S+++ ++ QE +  K+    PRRT + +       ED    +D ++T+S  G
Sbjct: 486 FQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSPPKDNILTLSERG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+    + AQ RG +G+    +R  D ++          +LFFS  G V K     +
Sbjct: 546 YVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAI 605

Query: 607 PIGSPQARGKALINILS--LNQGERITTIMPFPEDESS-WNNLYVVFATKHGNVRRNKLS 663
           P       G    ++L+    + + +T ++     +    ++  VV  T  G V     S
Sbjct: 606 PQSELNTIGVPATSLLNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKVSVA--S 663

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL----GQCVRFPISAIRVFAG- 718
               +   GK  + LD  D +  V      + + +T       G  +   +   RV    
Sbjct: 664 AASMLGHKGKKVITLDKGDRLQQVMFARTSDHLFITGTGKAGKGLILHCRVGDFRVVKSA 723

Query: 719 -RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R   G++ +    G++ ++ A+V  A  D D+     + +  +   ++    E     +
Sbjct: 724 CRPISGIKTM----GEKKVAEAVVEDAGDDEDDDEDDGELLPPKTVGMAIVPGERMVSAS 779

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +                    FIL  ++KG GK  ++  +R+  R   G+      K ++
Sbjct: 780 EEF----------------GPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDD 823

Query: 838 ----IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA---TKGVVIFSTAKDER 890
                  LV     +  D+++L +  G   R+ VN++    R+     G  I      + 
Sbjct: 824 DALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDLPK--RSDPLALGAAIIKLDATDA 881

Query: 891 VVSVERIRES 900
           + S   +   
Sbjct: 882 LKSANLLPSE 891


>gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
 gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
          Length = 806

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +LL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKKLLQVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T   VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E +      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETLIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+GI+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPVGVR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --RPLNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEVV 798



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 100/261 (38%), Gaps = 11/261 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTEIVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G  V  I     D+ +  A V+    +    I ++      ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETLIWATVVPNFEEEKRFIVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +E            I+  +   +    +  +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G++  ++ + + + +       ++ DQ+ILV+ +G + R+  +EI  ++RA +G+VIF 
Sbjct: 681 AGVKGINLKEDDYVAS--GRPLNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFK 738

Query: 885 TAKDE--RVVSVERIRESEIV 903
             K    R+V +E +R+ E+V
Sbjct: 739 ELKRNPYRIVGIEIVRDDELV 759


>gi|301066455|ref|YP_003788478.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
 gi|300438862|gb|ADK18628.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
          Length = 814

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/901 (32%), Positives = 455/901 (50%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  D+L+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDVLAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I      L++     +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I+  +  T  Q+ D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTT---------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +  ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 708 -----------AKVGILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPVQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 806

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +LL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKKLLQVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T   VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E +      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETLIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+GI+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPVGVR-AAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --RALNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEVV 798



 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 100/261 (38%), Gaps = 11/261 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTEIVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G  V  I     D+ +  A V+    +    I ++      ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETLIWATVVPNFEEEKRFIVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +E            I+  +   +    +  +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G++  ++ + + + +       ++ DQ+ILV+ +G + R+  +EI  ++RA +G+VIF 
Sbjct: 681 AGVKGINLKEDDYVAS--GRALNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFK 738

Query: 885 TAKDE--RVVSVERIRESEIV 903
             K    R+V +E +R+ E+V
Sbjct: 739 ELKRNPYRIVGIEIVRDDELV 759


>gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 807

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNADKDQLILVTQRGAIKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNADKDQLILVTQRGAIKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|325686242|gb|EGD28285.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 827

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 278/889 (31%), Positives = 449/889 (50%), Gaps = 96/889 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +     +++++  I  E + V +S  GY
Sbjct: 456 ILADPKVLQKEIIKELRAVKKEFGSDRRSEISDEKARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    NL  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALDD--PNLAFLLATNDGFIKQVALADLQP 628

Query: 668 IN---RSGKIAMKLDSRD-EILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +++V+    +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 688 AGVKSINLKEDDYVVACLVTDPQYEDLLK------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+++G  K+        ++R+ +G+      K  +   +
Sbjct: 717 ------------------VGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKT-KPHRI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           VA+     N ++IL++      +IR   ++  +  R + G  +     D
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTD 804



 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 17/242 (7%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++   SD        K  +++D +         T+E+  +L ++ G   R  + + +  
Sbjct: 474 VKKEFGSDRRSEISDEKARVEVDEK------ALITEESVRVLISRDGYIKRSSMRSFQS- 526

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEI 772
                 G  G  L + D+V+    +      Y               L+        + +
Sbjct: 527 ---TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVESKWKDVGQHL 581

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATD 831
           +     ++ E  I     + L       L  +  GF K+ +  D + +     + I A  
Sbjct: 582 SQELGLAADESIIRVFALEALDDPNLAFLLATNDGFIKQVALADLQPTRTYKSRAIMAMK 641

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +   +     V +   ++  +I L +++   ++  + E+        GV   +  +D+ V
Sbjct: 642 MKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGARAAGVKSINLKEDDYV 701

Query: 892 VS 893
           V+
Sbjct: 702 VA 703


>gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987]
 gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187]
 gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
 gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987]
 gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187]
 gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
          Length = 807

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V +                                                   
Sbjct: 688 LKEDDYVAAG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + A  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVAAGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V +
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAA 696


>gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
 gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
          Length = 801

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 287/856 (33%), Positives = 459/856 (53%), Gaps = 92/856 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + +  + + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  + K
Sbjct: 2   ENSTQRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G V+G YHPHG++++Y+A+ RM+QDW LR  L++  GN GS+DGDP AA R
Sbjct: 62  AFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   +  LL D+ K+ VDF PN+D S  EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 122 YTEARLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++D  +  +++    LD L+  I+GPDFPTGA+I G   IK AYATG+G I+
Sbjct: 182 IPPHNLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGAIIQGIQEIKKAYATGKGRII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G R+QIVVTEIPY+VNKA +++KI +L  +K+I  I ++RDE+DR G R
Sbjct: 242 VRSKAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+   ++++LN L++ T LQ  +++NMVA++  +P    L+ ++ A++  ++EVV
Sbjct: 302 IVIELKKDVKSEMVLNYLFKNTDLQVSYNINMVAIHNKRPVLMGLMDLIDAYIQHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R+ Y L +AR+R H++ GL   V+ LDEVV +IR S +   A++ LM           
Sbjct: 362 TNRSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMV---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ L+L RLT      ++ E   L   I E  +
Sbjct: 412 ----------------AFEFSERQAEAIVMLQLYRLTNTDVTALQQENEELSKTILELTE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           ILSS ++LL +I+ EL  V+ +  T RR++I E + +  +++ D I +ED++V V+  GY
Sbjct: 456 ILSSETKLLKVIQTELKQVRKDFKTERRSQIEEQIQEIKIDETDMITKEDVIVAVTKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR  +  Y A +         VM+D D +     V T  ++L F++ G      V++LP
Sbjct: 516 VKRTSIRSYNATK-----SEMPVMKDGDELVSKLQVDTLQTLLMFTNRGSFIYLPVYKLP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-I 666
               +  G+ + N+++++  E++  +    + +S      + F T +G +++ +L DF +
Sbjct: 571 EFKWKDIGQHVSNLVTIDSEEKVIAVFAISDFKSEE---CLFFTTANGMIKKTRLGDFEV 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                  +AM +   D ++SV      ND+++ TK G  ++F         G  ++GV+G
Sbjct: 628 SRYNRAMMAMAVKEDDVLISVVKAPSPNDVIMVTKQGYLLKFS-DEEIAITGLKAMGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I++ K DQ+I + +    D                                         
Sbjct: 687 IAIGKDDQLIKVVLANAND----------------------------------------- 705

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L ++++G  K+    D  +S+R+ KG       K N     V    
Sbjct: 706 ------------ELLLLTQRGNIKKLKVKDIALSSRNKKGSLGIKAIKSNPH-YFVDCIK 752

Query: 847 VNDNDQIILVSDKGTL 862
           V  N ++ + ++   +
Sbjct: 753 VESNQEVYIKTETTQV 768



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 108/262 (41%), Gaps = 14/262 (5%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I  I    E +       +V  TK G V+R  +      N +      +   DE++S
Sbjct: 487 EEQIQEI-KIDETDMITKEDVIVAVTKDGYVKRTSI---RSYNATKSEMPVMKDGDELVS 542

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLH 743
                    +L+ T  G  +  P+  +  F     +G    +L      ++VI++  +  
Sbjct: 543 KLQVDTLQTLLMFTNRGSFIYLPVYKLPEF-KWKDIGQHVSNLVTIDSEEKVIAVFAI-- 599

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILT 802
           +D   +E + +       ++   GD E     +   ++     +     +K      ++ 
Sbjct: 600 SDFKSEECLFFTTANGMIKKTRLGDFEVSRYNRAMMAMAVKEDDVLISVVKAPSPNDVIM 659

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+++G+  + S  +  I+     G++   + K +++  +V     N ND+++L++ +G +
Sbjct: 660 VTKQGYLLKFSDEEIAITGLKAMGVKGIAIGKDDQLIKVVLA---NANDELLLLTQRGNI 716

Query: 863 IRVPVNEIRIASRATKGVVIFS 884
            ++ V +I ++SR  KG +   
Sbjct: 717 KKLKVKDIALSSRNKKGSLGIK 738



 Score = 71.1 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 105/280 (37%), Gaps = 21/280 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +  L     E   TI+   E  SS   L  V  T+   VR++  ++           +K+
Sbjct: 436 VTALQQENEELSKTILELTEILSSETKLLKVIQTELKQVRKDFKTERRSQIEEQIQEIKI 495

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D  D        T+E+ I+  TK G   R  I +         V      +  GD+++S 
Sbjct: 496 DETD------MITKEDVIVAVTKDGYVKRTSIRSYNATKSEMPV------MKDGDELVSK 543

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
             V                Y+              + +++L    S E  I+     + K
Sbjct: 544 LQVDTLQTLLMFTNRGSFIYLPVYKLPEFKWKDIGQHVSNLVTIDSEEKVIAVFAISDFK 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E    T +  G  K+T   DF +S R  + + A  V + +    L++V      + +I
Sbjct: 604 SEECLFFT-TANGMIKKTRLGDFEVS-RYNRAMMAMAVKEDD---VLISVVKAPSPNDVI 658

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +V+ +G L++    EI I      GV   +  KD++++ V
Sbjct: 659 MVTKQGYLLKFSDEEIAITGLKAMGVKGIAIGKDDQLIKV 698


>gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
 gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
          Length = 843

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 300/912 (32%), Positives = 480/912 (52%), Gaps = 116/912 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +  D+ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 ASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG VA+ID+P++  + L ++I GPDFPTG  I+ + GI+ AYATGRG I +RG++
Sbjct: 193 LGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGIT 252

Query: 255 HIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IE     R++      IVVTE+PYQVNKAA +EK+A+LV + R+  IAD+RDESDR G 
Sbjct: 253 RIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A+V+L  LY+ T+LQS F   ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  + L +A+ R H+L GL IA+ NLD ++ I+R + +  TA+              
Sbjct: 373 LTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAK-------------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       +     + +S+ Q  AIL + + RLTGL +  +++E + L   I+E  
Sbjct: 419 ------------MRFQAELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEELQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD----------MEDEDCIVREDM 538
            +LS R  LL  +K++L S+K +   PRRTRIV+               E+     +++ 
Sbjct: 467 TLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPTVKKEESPAKAKKEE 526

Query: 539 VVTVSHLGYV----KRVPLSVYRAQ--------RRGGKGRSGVVMRDE---DFVTDLFIV 583
           + T S         K   L+++  Q            +G +   + D    D      I+
Sbjct: 527 LPTTSSPKTEESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSSIFRAII 586

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
              + ++  + +G  Y   V  +P  + Q+    L+++L     +    ++      +  
Sbjct: 587 GQKSELMVITDVGKAYPIAVAEIPPLTLQS--IPLLSLLPKGAQKDANRVIDAGFVPNDP 644

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +   ++  T+ G ++R K+S+   +   G + +KL   D +  V    +  ++++    G
Sbjct: 645 HGYDLLLLTQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVVIAISGG 704

Query: 704 QCVRFPI-SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           + +R+P+   +    GR++ G + + L  G++V++  + LH+  +               
Sbjct: 705 RILRYPVTDEVIPLMGRSAQGNQALKLRYGEEVVN-CVTLHSQGE--------------- 748

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                                +L +S  G+GKR S  + R+   
Sbjct: 749 -------------------------------------VLLISSLGYGKRLSLTELRLGKL 771

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G +    ++  +   L  +    +N Q+  ++++   + + V  I    +   G  +
Sbjct: 772 GDLGTQCLQFTQ--KTDKLAGMIAAKENGQVRFLTNQNRSLAISVETILPWGKDGPGDRL 829

Query: 883 FSTAKDERVVSV 894
                +E + +V
Sbjct: 830 VKLQPEEVITTV 841



 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGALVAVFPV 847
            + +  ++  ++ +++ G     +  +          + +     ++ +    + A F  
Sbjct: 582 FRAIIGQKSELMVITDVGKAYPIAVAEIPPLTLQSIPLLSLLPKGAQKDANRVIDAGFVP 641

Query: 848 ND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ND     ++L++ +G + RV ++E+       +G+V+    + +R+  V   +E + V
Sbjct: 642 NDPHGYDLLLLTQQGRIKRVKMSELSDL--TNRGLVLIKLKEGDRLGFVCPTQEGQEV 697


>gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
 gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
          Length = 807

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 464/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I         E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVSNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVSNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 93/279 (33%), Gaps = 20/279 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +            Y+              + + ++ +    E  I        +
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVSNFE 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +++FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +    I+
Sbjct: 602 EEKRFIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGTSDIV 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L +     +    +E+        GV   +  +D+ V S
Sbjct: 658 LATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801]
 gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801]
          Length = 835

 Score =  571 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 467/904 (51%), Gaps = 108/904 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCA
Sbjct: 13  IIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              A   +  D+ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 ASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG VA+ID+P++  + L ++I GPDFPTG  I+ + GI+ AYATGRG I +RG++
Sbjct: 193 LGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGIT 252

Query: 255 HIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IE     R++      IVVTE+PYQVNKAA +EK+A+LV + R+  IAD+RDESDR G 
Sbjct: 253 RIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A+ +L  LY+ T+LQS F   ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  + L +A+ R H+L GL IA+ NLD ++ I+R + +  TA+              
Sbjct: 373 LTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAK-------------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       +     + +S+ Q  AIL + + RLTGL R  +++E + L   I+E  
Sbjct: 419 ------------MRFQAELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-----GLLDMEDEDCIVREDMVVTVS 543
            +LS R  LL  +K++L S+K +   PRRTRIV+           +         +   +
Sbjct: 467 TLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPNVKKEEPPTTLSPKT 526

Query: 544 HLGYVKRVPLSVYRAQ--------RRGGKGRSGVVMRDE---DFVTDLFIVSTHTSVLFF 592
                K   L+++  Q            +G +   + D    D      I+   + ++  
Sbjct: 527 EESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVI 586

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G  Y   V  +P  + QA    L+++L          ++      +  +   ++  T
Sbjct: 587 TDAGKAYPVAVAEIPPLTLQA--IPLLSLLPKGAQRDANRVIDAGFVPNDPHGYDLLLLT 644

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-S 711
           + G ++R K+S+   +   G + +KL   D +  V    +  ++ +    G+ +R+P+  
Sbjct: 645 QQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRILRYPVTD 704

Query: 712 AIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            +    GR++ G + + L   G+ V++   +                             
Sbjct: 705 EVIPLMGRSAQGNQALKLRNVGETVVNCLTLH---------------------------- 736

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                     +  +L +S  G+GKR S  + R+      G +  
Sbjct: 737 -------------------------SQGEVLLISSLGYGKRLSLTELRLGKLGDLGTQCL 771

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             ++  +   L  +    +N Q+  ++++   + + V  I    +   G  +     +E 
Sbjct: 772 QFTQ--KTDKLAGMIAAKENGQVRCLTNQNRSLAISVETILPWGKDGPGDRLVKLQPEEV 829

Query: 891 VVSV 894
           + +V
Sbjct: 830 ITTV 833



 Score = 41.1 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGALVAVFPV 847
            + +  ++  ++ +++ G     +  +          + +     ++ +    + A F  
Sbjct: 573 FRAIIGQKSELMVITDAGKAYPVAVAEIPPLTLQAIPLLSLLPKGAQRDANRVIDAGFVP 632

Query: 848 ND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ND     ++L++ +G + RV ++E+       +G+V+    + +R+  V   +E + V
Sbjct: 633 NDPHGYDLLLLTQQGRIKRVKMSELSDL--TNRGLVLIKLKEGDRLGFVCPTQEGQEV 688


>gi|104773994|ref|YP_618974.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514010|ref|YP_812916.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423075|emb|CAI97796.1| DNA topoisomerase IV, subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093325|gb|ABJ58478.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 827

 Score =  571 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 277/889 (31%), Positives = 449/889 (50%), Gaps = 96/889 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +     +++++  I  E + V +S  GY
Sbjct: 456 ILADSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    +L  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALDD--PDLAFLLATNDGFIKQVALADLQP 628

Query: 668 IN---RSGKIAMKLDSRD-EILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +++V+    +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLAKTSEKREITLFTNQAFALKYDIDEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 688 AGVKSINLKEDDYVVACLVTDPQYEDLLK------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+++G  K+        ++R+ +G+      K  +   +
Sbjct: 717 ------------------VGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKT-KPHRI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           VA+     N ++IL++      +IR   ++  +  R + G  +     D
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTD 804



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 106/311 (34%), Gaps = 19/311 (6%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINI-LSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +     K  V        QA  +A++++ L       +  +    E+ +     Y     
Sbjct: 401 NKADAKKNLVAEFAFTDRQA--EAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILA 458

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVR 707
               +++  + +   + +      + +  DE   VE       T+E+  +L ++ G   R
Sbjct: 459 DSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKR 518

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             + + +        G  G  L + D+V+    +      Y               L+  
Sbjct: 519 SSMRSFQS----TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVES 572

Query: 768 D----TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                 + ++     ++ E  I     + L   +   L  +  GF K+ +  D + +   
Sbjct: 573 KWKDVGQHLSQELGLAADESIIRVFALEALDDPDLAFLLATNDGFIKQVALADLQPTRTY 632

Query: 824 -GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             + I A  +   +     V +   ++  +I L +++   ++  ++E+        GV  
Sbjct: 633 KSRAIMAMKMKGEDSRVITVDLAKTSEKREITLFTNQAFALKYDIDEVPQVGARAAGVKS 692

Query: 883 FSTAKDERVVS 893
            +  +D+ VV+
Sbjct: 693 INLKEDDYVVA 703


>gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
 gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
          Length = 807

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
 gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
          Length = 820

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 290/890 (32%), Positives = 474/890 (53%), Gaps = 97/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG + +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQ---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 412 ----------------HGFTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  TPR T I   + ++  E +  + +E++VVTV+  GYV
Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L Q E I  +  + E +   N    V  +K+G +++ ++++F  
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEFEP 627

Query: 668 IN----RSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                 R   I    D  DE+++V      +E D+ L + L   +R+P++ +    G  +
Sbjct: 628 WRTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYPLNEV-PVVGPKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L   D +I+  +V                                        
Sbjct: 687 AGVKAMNLKADDYLINGLLVYSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ ++++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVLITQRGAAKRMLAQEINQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V      +N Q+++ + KG    V  N+I I  R + G  I       ++
Sbjct: 754 VVYMGSGENQQVLVTNQKGQSFEVITNQIPINDRTSNGSFIMDEKTGGQI 803



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 84/216 (38%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE  ++  T+ G   R  + +        +     I + +GD ++           
Sbjct: 498 VLVAQEEVVVTVTRDGYVKRSSLRSY------GASKPEEIGMKEGDSLLYSNQMNTLDHL 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++    +   R  +       + L    ++ + +L  D  + G  +    +E+   + F
Sbjct: 552 LLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVFA---YKEIDPLKNF 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVS 857
           +L +S+ G  K+T   +F    R+ K    T +   +E   LV VF  +  +   + LVS
Sbjct: 609 VL-ISKNGMIKQTRMTEFEPW-RTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVS 666

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                +R P+NE+ +      GV   +   D+ +++
Sbjct: 667 HLAFGLRYPLNEVPVVGPKAAGVKAMNLKADDYLIN 702


>gi|325125699|gb|ADY85029.1| DNA topoisomerase IV subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 827

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 277/889 (31%), Positives = 450/889 (50%), Gaps = 96/889 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +     +++++  I  E + V +S  GY
Sbjct: 456 ILADSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G     + + D V     +ST T++  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNG-----LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    +L  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALDD--PDLAFLLATNDGFIKQVALADLQP 628

Query: 668 IN---RSGKIAMKLDSRD-EILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +++V+    +++ +I+L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLAKTSEKREIILFTNQAFALKYDIDEVPQVGAR-A 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 688 AGVKSINLKEDDYVVACLVTDPQYEDLLK------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  V+++G  K+        ++R+ +G+      K  +   +
Sbjct: 717 ------------------VGLVTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKT-KPHRI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           VA+     N ++IL++      +IR   ++  +  R + G  +     D
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTD 804



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 107/311 (34%), Gaps = 19/311 (6%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINI-LSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +     K  V        QA  +A++++ L       +  +    E+ +     Y     
Sbjct: 401 NKADAKKNLVAEFAFTDRQA--EAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEKILA 458

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVR 707
               +++  + +   + +      + +  DE   VE       T+E+  +L ++ G   R
Sbjct: 459 DSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGYIKR 518

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             + + +        G  G  L + D+V+    +      Y               L+  
Sbjct: 519 SSMRSFQS----TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLIYRPVHELVES 572

Query: 768 D----TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                 + ++     ++ E  I     + L   +   L  +  GF K+ +  D + +   
Sbjct: 573 KWKDVGQHLSQELGLAADESIIRVFALEALDDPDLAFLLATNDGFIKQVALADLQPTRTY 632

Query: 824 -GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             + I A  +   +     V +   ++  +IIL +++   ++  ++E+        GV  
Sbjct: 633 KSRAIMAMKMKGEDSRVITVDLAKTSEKREIILFTNQAFALKYDIDEVPQVGARAAGVKS 692

Query: 883 FSTAKDERVVS 893
            +  +D+ VV+
Sbjct: 693 INLKEDDYVVA 703


>gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 798

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 284/879 (32%), Positives = 459/879 (52%), Gaps = 101/879 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTKY
Sbjct: 305 KDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + NE N L   IKE   IL +  
Sbjct: 410 -----------FEFTEAQAEAIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I   + +  ++ E  +  ED+V++++  GY+KR   
Sbjct: 459 ALLQVIKSELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ L+  E   T++    ++S  ++ + V AT++G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPLDDYE---TVVDVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +AMK+   DE+++V    ++  I + T  G  + +    +     R + GV+ I+L   
Sbjct: 631 LVAMKVKDNDELINVIRLNEDQLISVLTHKGMSLTYSSEELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V    +                                              
Sbjct: 690 DFVVMTDVVDSDSS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+  +++G  KR S    + + R+ +GI      K N    +VA + V D   
Sbjct: 704 -------IIMATQRGAVKRISYKILQQAKRAQRGITLLKELKKNPH-RVVAGYVVKDESM 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAK 887
             L S+     G +      +I ++ + T G  +     
Sbjct: 756 YTLYSESHSEEGQI-----TDIHLSEQYTNGSFVVDVKD 789



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 85/247 (34%), Gaps = 20/247 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-----CTQENDILLTTKLGQCVRFPISAIRVFA 717
           S+   I +  K         EI  ++         E+ +L  T+ G   R    +     
Sbjct: 466 SELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSF---- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
             N+ GV  + L  GD ++    V   D         R  ++              + ++
Sbjct: 522 --NASGVTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVS 579

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            +      E  +     Q  K    ++L  +  G  K+++   F+ + R  K + A  V 
Sbjct: 580 QIVPLDDYETVVDVYNEQSFKDDAFYVL-ATRNGMIKKSNVSLFKTT-RYNKPLVAMKVK 637

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E   L+ V  +N++  I +++ KG  +     E+        GV   +   ++ VV 
Sbjct: 638 DNDE---LINVIRLNEDQLISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVM 694

Query: 894 VERIRES 900
            + +   
Sbjct: 695 TDVVDSD 701


>gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
 gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
          Length = 817

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 295/890 (33%), Positives = 459/890 (51%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  SL  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG      +  L     
Sbjct: 516 SPRSFNASTLEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   L +  Q E I     F E    +  +    AT+ G ++R +  +      
Sbjct: 571 KDIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I++V     E+ I++ TK G  +RF I  + V     + GV+ 
Sbjct: 627 YRSKSTKYAKLKDQDDCIVAVAPVVLED-IMIITKNGYGLRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GDQV        A       +  +    + +R++  D    +  K    V   + 
Sbjct: 685 INLKDGDQV------SAAFKSTTPSMYILTQRGSLKRMLQDDIPVTSRAKRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    F    +++G     +S +                              
Sbjct: 739 NKPHRVFKAGPVF----TDQGDFDLFTSQE-----------------------------E 765

Query: 847 VNDNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           V + DQI+ ++   G +  V + ++ I+ R + G  +  T  D+ V S  
Sbjct: 766 VAEQDQILQITSTTGQVTEVDLTQLSISERTSNGSFVNDTISDQEVFSAT 815



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/550 (13%), Positives = 174/550 (31%), Gaps = 81/550 (14%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKAR--DRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
              +K      +  VV R+K  + + +   +  V+  +   +     V +I     N + 
Sbjct: 222 RDEIKKAYETGKGRVVVRSKTEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKV 281

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A    ++   +   ++  I+L  D++  +  +     +++Q      +         +  
Sbjct: 282 AGIAEVRDESDRDGLRIAIELKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVG 341

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---ED 529
           I      L   I    DI+ +RSR      +  L + +     R   I++ ++ +    +
Sbjct: 342 IVP---ILSSYIAHRRDIIVARSRFDKEKAERRLHIVE--GLIRVISILDEVIALIRASE 396

Query: 530 EDCIVREDMVVT--VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                +E++ V+   +       V L +YR           V + +E       I +   
Sbjct: 397 NKADAKENLKVSYDFTEEQAEAIVTLQLYRLTN-----TDIVTLEEEHASLKEQIAT--- 448

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNL 646
                     ++      L     +  G    + L    +   I T     E+E+     
Sbjct: 449 LAAIIGDERTMFNLMKKELREVK-KLFGNPRRSELQDTAKTIEIDTASLIVEEET----- 502

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
             V  T+ G ++R         N S    +     DE++ VE       +LL T LG  +
Sbjct: 503 -FVSVTRAGYIKRTS---PRSFNASTLEEVGKRDDDELIFVEPAKTTQHLLLFTNLGNAI 558

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             PI  +                                             +  + +  
Sbjct: 559 YRPIHEL-------------------------------------------TDTKWKDIGE 575

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
             ++ +T+ + +  +      ++ +            +++G  KR    +     R+ + 
Sbjct: 576 HLSQTLTNFEQEEEILFAEIVDQFE-----GVTYFAATQQGQIKRFERKELSPW-RTYRS 629

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                    ++   +VAV PV   D I++++  G  +R  + E+ +      GV   +  
Sbjct: 630 KSTKYAKLKDQDDCIVAVAPVVLED-IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLK 688

Query: 887 KDERVVSVER 896
             ++V +  +
Sbjct: 689 DGDQVSAAFK 698


>gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 817

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 293/890 (32%), Positives = 459/890 (51%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  +L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG      +  L     
Sbjct: 516 SPRSFNASTLEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   L +  Q E I     F E    +  +    AT+ G ++R +  +      
Sbjct: 571 KDIGEHLSQTLTNFEQEEEIL----FAEVVDQFEGVTYFAATQQGQIKRFERKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I++V     E+ I++ TK G  +RF I  + V     + GV+ 
Sbjct: 627 YRSKSTKYAKIKDQEDRIVAVAPVVFED-IMIITKNGYGLRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GDQV +              +  +    + +R++  D    +  K    V   + 
Sbjct: 685 INLKDGDQVAA------TFKSTTPSMYILTQRGSLKRMLQDDIPVTSRAKRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    F    +++G     +S +                              
Sbjct: 739 NKPHRVFKAGPVF----TDQGDFDLFTSQE-----------------------------E 765

Query: 847 VNDNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           V + DQI+ ++   G +  V + ++ I+ R + G  +  T  D+ V S  
Sbjct: 766 VGEQDQILAITSTTGQVTEVDLTQLSISERTSNGSFVNDTISDQEVFSAT 815


>gi|228909406|ref|ZP_04073231.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|228940681|ref|ZP_04103244.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973599|ref|ZP_04134181.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980157|ref|ZP_04140471.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228779515|gb|EEM27768.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228786060|gb|EEM34057.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818925|gb|EEM64987.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228850183|gb|EEM95012.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|326941315|gb|AEA17211.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 807

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 295/884 (33%), Positives = 466/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F+S G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQEEADELNKKILELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++  +  +Y     Y       + L       ++  ++++ +   +     
Sbjct: 542 FDTNTTETVLLFTSKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
 gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
          Length = 831

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 284/831 (34%), Positives = 420/831 (50%), Gaps = 62/831 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        EE  + I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 4   MARTTSPPPEELTEKIIDVDVSEEMRGSFLEYAYSVIYQRALPDARDGLKPVQRRILYQM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VKCAR+ GEVMGK HPHG++AIYDAL R++Q +++R+ L++G GNFGS+
Sbjct: 64  SEMGLRPDRGHVKCARVVGEVMGKLHPHGDSAIYDALVRLSQPFAMRVPLVDGHGNFGSL 123

Query: 121 DGDPPAA-ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            GD   A  RYTE RL +AA  +++ + ++ VDFRPNYDG   EP VL A +PN+LVNG 
Sbjct: 124 GGDDAPAAMRYTEARLTRAAMLMVESIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGA 183

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNLGEV+     ++ +PD  L+ LME I GPD PTG  I G  GI++
Sbjct: 184 SGIAVGMATNMAPHNLGEVIAAARHLLAHPDATLEELMEFIPGPDLPTGGTITGLDGIRD 243

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRG+  IR    IEK +  R  +VVTE+PY V    ++ +I ELV+ K++  I+DL
Sbjct: 244 AYTKGRGTFRIRATVSIEKLTPRRTGLVVTELPYNVGPEKVISRIKELVQAKKLQGISDL 303

Query: 300 RDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D +DR    R+VIELK G + + +L +LYR T ++  F +N VAL   +P    L  +L
Sbjct: 304 KDLTDRNQGLRLVIELKNGFNPEAVLEELYRLTPMEETFGINNVALVDGEPRTLGLRDLL 363

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R EVV RR ++   K  +R H++ GL +A+A++D+V+ +IR S +   AR+ LM
Sbjct: 364 QVYVDHRLEVVRRRCEHRRAKREERLHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLM 423

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  LS+ Q R IL+  L RLT   + ++  E +
Sbjct: 424 D--------------------------TFDLSDTQARYILDTPLRRLTRYDKQELEQERD 457

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR--- 535
           +L  EI E   IL S  +L  ++ +EL +V  E  TPRRT + E   ++      +    
Sbjct: 458 TLTAEIAELTAILESDKKLRRLVSKELAAVAKEFATPRRTVLRESTGEVRTSAMPLEVGD 517

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +   V +S  G + R           G + R        D +      +    V   + L
Sbjct: 518 DPCHVLLSTSGLIGRTSGQQLPPMFEGPRTR-------NDAMASNVRATVRGEVGLVTDL 570

Query: 596 GFVYKEKVWRLPIGSPQAR-------GKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           G V +  V  LP    +A        G  +   + L+  ER+  +     D        +
Sbjct: 571 GRVIRVPVLELPELPDKADENPAISSGVPVTEFVELDADERVIALTSLDSD-----GPGL 625

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVR 707
           V  T+ G V+R          +     + L   D ++      T E D++  T   Q +R
Sbjct: 626 VVGTRSGIVKRVGGD--YPQQKDDFEIIALRPGDRLVGATPLVTGEEDLVFITSNAQLLR 683

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GV GI LA+G   +    VL  +      +         +   + 
Sbjct: 684 FSATTVRP-QGRGAGGVTGIRLAEGAHAVWFGAVLSPEDAVVVTVAGSSTGPDSQPGTAK 742

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
            T          +  G     RCQ     E  +L     G+  R+ +  FR
Sbjct: 743 VTPFTAFPAKGRATGGV----RCQRFLKGEDILL----FGWVGRSPARAFR 785



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 92/295 (31%), Gaps = 36/295 (12%)

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
                +L  + GE  T+ MP        ++   V  +  G + R        +       
Sbjct: 493 TPRRTVLRESTGEVRTSAMPL----EVGDDPCHVLLSTSGLIGRTSGQQLPPM----FEG 544

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN------SVGVRG--- 726
            +  +     +V    +   + L T LG+ +R P+  +     +       S GV     
Sbjct: 545 PRTRNDAMASNVRATVRGE-VGLVTDLGRVIRVPVLELPELPDKADENPAISSGVPVTEF 603

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   ++VI++  +     D D     +   S   + + GD  +        ++     
Sbjct: 604 VELDADERVIALTSL-----DSDGPGLVVGTRSGIVKRVGGDYPQQKDDFEIIALRPGDR 658

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 L   E+ ++ ++      R S+   R   R   G+    +++       V    
Sbjct: 659 LVGATPLVTGEEDLVFITSNAQLLRFSATTVRPQGRGAGGVTGIRLAEG---AHAVWFGA 715

Query: 847 VNDNDQIILVS----------DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V   +  ++V+            GT    P        RAT GV      K E +
Sbjct: 716 VLSPEDAVVVTVAGSSTGPDSQPGTAKVTPFTAFPAKGRATGGVRCQRFLKGEDI 770



 Score = 54.2 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 50/204 (24%), Gaps = 8/204 (3%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              +   +L +  G   R     +             ++      V     ++       
Sbjct: 515 VGDDPCHVLLSTSGLIGRTSGQQLPPMFEGPRTRNDAMASNVRATVRGEVGLVTDLGRVI 574

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                       +   +        +     ++ +        L      ++  +  G  
Sbjct: 575 RVPVLELPELPDKADENPAISSGVPVTEFVELDADERVIALTSLDSDGPGLVVGTRSGIV 634

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-VNDNDQIILVSDKGTLIRVPVN 868
           KR    D+             ++  +     LV   P V   + ++ ++    L+R    
Sbjct: 635 KRVG-GDYPQQK------DDFEIIALRPGDRLVGATPLVTGEEDLVFITSNAQLLRFSAT 687

Query: 869 EIRIASRATKGVVIFSTAKDERVV 892
            +R   R   GV     A+    V
Sbjct: 688 TVRPQGRGAGGVTGIRLAEGAHAV 711


>gi|196044554|ref|ZP_03111789.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225865578|ref|YP_002750956.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|229185831|ref|ZP_04313004.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
 gi|196024589|gb|EDX63261.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225786959|gb|ACO27176.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|228597543|gb|EEK55190.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
          Length = 807

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FDFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I         E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVQNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVQNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +            Y+              + + ++ +    E  I     Q  +
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVQNFE 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +++FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +    I+
Sbjct: 602 EEKRFIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGTSDIV 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L +     +    +E+        GV   +  +D+ V S
Sbjct: 658 LATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
 gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
          Length = 816

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 73/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + D D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--VNGLLVLADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+V+
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVN 702


>gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
 gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
          Length = 817

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 295/846 (34%), Positives = 480/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++++  +VL   AD D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E   + I+ +++KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEIILMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 70.7 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 73/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + D D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--VNGLLVLADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 499 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 552

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 553 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 609 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+V+
Sbjct: 669 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIVN 703


>gi|118478840|ref|YP_895991.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418065|gb|ABK86484.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
          Length = 807

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKVF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FDFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I +    + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I         E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVQNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +        +G  V  I SL + + +I   +V + + +    +   K+   ++  
Sbjct: 562 LPVYEM-PDIRWKDLGQHVANIVSLDRDETIIWATVVQNFEEEKRFIVFVTKNGMIKKTE 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           ++    +  S    +       E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +            Y+              + + ++ +    E  I     Q  +
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVQNFE 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +++FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  +    I+
Sbjct: 602 EEKRFIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGTSDIV 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L +     +    +E+        GV   +  +D+ V S
Sbjct: 658 LATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|199599526|ref|ZP_03212914.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|258508415|ref|YP_003171166.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
 gi|199589567|gb|EDY97685.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|257148342|emb|CAR87315.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus GG]
 gi|259649729|dbj|BAI41891.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
          Length = 813

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 297/899 (33%), Positives = 458/899 (50%), Gaps = 97/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV +  + ++ +P  DL  LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVFNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+VA R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y LNKA+ R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQ------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      +++E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQ 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I++EL  +  E    RR+ I   +   ++     +  E ++V VS  GYVKR 
Sbjct: 457 PASRDRVIEKELKRIAKEYGDDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G +    V+ +     
Sbjct: 517 SLRSYQAVDPEDNG-----LKPNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + +      V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKVLAVFAFDQLDLAG---TFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R   +AMKL +   ++  +  T  Q  D+ + ++    + FP+  +     R + GV+ 
Sbjct: 629 KRKPMMAMKLKTPGAVVTNAYFTTDQAQDVFVVSRHAYGLDFPLDEVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V   +      +  +    A +R+   +  ++              
Sbjct: 688 MDLKPEDEVVNFILVKQPE---KAVVGILTQRGAFKRMALSEVGQM-------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                             +R+ +G+      K +    +VA+  
Sbjct: 731 ----------------------------------SRARRGLLVLRELKRDPH-RIVAMMQ 755

Query: 847 VNDNDQIILVSDKGTLIR-VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+DN ++ +++D   +I   PVN      R + G  +  T    + V V R RE   V+
Sbjct: 756 VDDNTRLDVLTDADKVITLTPVNH-PTGDRYSNGSFVIDTDVQGKPVFV-RTREETPVE 812


>gi|70726554|ref|YP_253468.1| DNA topoisomerase IV subunit A [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447278|dbj|BAE04862.1| topoisomerase IV subunit A [Staphylococcus haemolyticus JCSC1435]
          Length = 799

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 284/879 (32%), Positives = 459/879 (52%), Gaps = 101/879 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTKY
Sbjct: 305 KDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + NE N L   IKE   IL +  
Sbjct: 410 -----------FEFTEAQAEAIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I   + +  ++ E  +  ED+V++++  GY+KR   
Sbjct: 459 ALLQVIKSELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ L+  E   T++    ++S  ++ + V AT++G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPLDDYE---TVVDVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +AMK+   DE+++V    ++  I + T  G  + +    +     R + GV+ I+L   
Sbjct: 631 LVAMKVKDNDELINVIRLNEDQLISVLTHKGMSLTYSSEELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V    +                                              
Sbjct: 690 DFVVMTDVVDSDSS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+  +++G  KR S    + + R+ +GI      K N    +VA + V D   
Sbjct: 704 -------IIMATQRGAVKRISYKILQQAKRAQRGITLLKELKKNPH-RVVAGYVVKDESM 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAK 887
             L S+     G +      +I ++ + T G  +    +
Sbjct: 756 YTLYSESHSEEGQI-----TDIHLSEQYTNGSFVVDVKE 789



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 85/247 (34%), Gaps = 20/247 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-----CTQENDILLTTKLGQCVRFPISAIRVFA 717
           S+   I +  K         EI  ++         E+ +L  T+ G   R    +     
Sbjct: 466 SELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTSTRSF---- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
             N+ GV  + L  GD ++    V   D         R  ++              + ++
Sbjct: 522 --NASGVTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVS 579

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            +      E  +     Q  K    ++L  +  G  K+++   F+ + R  K + A  V 
Sbjct: 580 QIVPLDDYETVVDVYNEQSFKDDAFYVL-ATRNGMIKKSNVSLFKTT-RYNKPLVAMKVK 637

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E   L+ V  +N++  I +++ KG  +     E+        GV   +   ++ VV 
Sbjct: 638 DNDE---LINVIRLNEDQLISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVM 694

Query: 894 VERIRES 900
            + +   
Sbjct: 695 TDVVDSD 701


>gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
 gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
          Length = 817

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 295/893 (33%), Positives = 461/893 (51%), Gaps = 85/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  +L  +I     I+  
Sbjct: 408 ------------SYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG      V  L     
Sbjct: 516 SPRSFNASTVEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   L +  Q E I     F E    +  +    AT+ G ++R +  +      
Sbjct: 571 KDIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I++V     E+ I++ TK G  +RF I  + V     + GV+ 
Sbjct: 627 YRSKSTKYAKLKDQEDRIIAVAPVVLED-IMIITKNGYGLRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GDQV ++             +  +    + +R+   D    +  K    V   + 
Sbjct: 685 INLKDGDQVAAVF------KSTTPSMYILTQRGSLKRMSQDDIPVTSRAKRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    F    +++G     +S +                              
Sbjct: 739 SKPHRVFKAGPVF----TDQGDFDLFTSQE-----------------------------E 765

Query: 847 VNDNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V + DQI+ ++   G +  V V ++ ++ R + G  +     D+ V S  RI+
Sbjct: 766 VAEQDQILQITSTTGQVTEVDVTQLSLSERTSNGSFVNDQISDQEVYS-ARIK 817


>gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
 gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis]
 gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
          Length = 823

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 292/886 (32%), Positives = 459/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVV---DQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDDTDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D + S  I        +    Y+       + +S D    TS            
Sbjct: 686 MNLKEDDTLQSAFI-------CNTSSFYLLTQRGSLKRVSIDEIPATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G L +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGSVAEQGFVGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          ++   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPW-RTYKSKSVKYAKLKDDTDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQS 696


>gi|229552217|ref|ZP_04440942.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539628|ref|YP_003174127.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314403|gb|EEN80376.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151304|emb|CAR90276.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus Lc 705]
          Length = 813

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 298/899 (33%), Positives = 460/899 (51%), Gaps = 97/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  + ++ +P  DL  LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVVNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+VA R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y LNKA+ R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQ------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      +++E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQ 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I++EL  +  E    RR+ I   +   ++     +  E ++V VS  GYVKR 
Sbjct: 457 PASRDRVIEKELKRIAKEYGDDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G +    V+ +     
Sbjct: 517 SLRSYQAVDPEDNG-----LKPNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + +      V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKVLAVFAFDQLDLAG---TFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R   +AMKL +   ++  +  T  Q  D+ + ++    + FP++ +     R + GV+ 
Sbjct: 629 KRKPMMAMKLKTPGAVVTNAYFTTDQAQDVFVVSRHAYGLDFPLAEVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V   +      +  +    A +R+   +  ++              
Sbjct: 688 MDLKPEDEVVNFILVKQPE---KAVVGILTQRGAFKRMALSEVGQM-------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                             +R+ +G+      K +    +VA+  
Sbjct: 731 ----------------------------------SRARRGLLVLRELKRDPH-RIVAMMQ 755

Query: 847 VNDNDQIILVSDKGTLIR-VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+DN ++ +++D   +I   PVN      R + G  +  T    + V V R RE   V+
Sbjct: 756 VDDNTRLDVLTDADKVITLTPVNH-PTGDRYSNGSFVIDTDVQGKPVFV-RTREETPVE 812


>gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
 gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
          Length = 816

 Score =  568 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 702


>gi|229075490|ref|ZP_04208479.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
 gi|229098039|ref|ZP_04228989.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|229104126|ref|ZP_04234800.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|229117057|ref|ZP_04246439.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228666461|gb|EEL21921.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228679333|gb|EEL33536.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|228685476|gb|EEL39404.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|228707739|gb|EEL59923.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
          Length = 807

 Score =  568 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 299/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDQPNSSVDDLLAVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  R           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVIPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGDKDQLILVTQRGAIKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  V     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEVDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 92/279 (32%), Gaps = 20/279 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALEQEAAELNKKIIELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEEIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 739 AIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +            Y+              + + ++ +    E  I        +
Sbjct: 542 FDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANIVSLDRDETIIWATVIPNFE 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +++FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +    I+
Sbjct: 602 EEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDGTSDIV 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L +     +    +E+        GV   +  +D+ V S
Sbjct: 658 LATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|239631505|ref|ZP_04674536.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525970|gb|EEQ64971.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 814

 Score =  568 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 292/901 (32%), Positives = 454/901 (50%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I      L++     +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A      G     ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADNG-----LKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++  +  F + + + +    V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKVLAVFAFDQLDGAGS---FVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I+  +  T  Q+ D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V         ++  +    A +++   +  E+              
Sbjct: 688 MDLKPDDEVVNFILVKDPTT---AKVGILTQRGAFKKMALSEVGEM-------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                             +R+ +G+      K +    +  +  
Sbjct: 731 ----------------------------------SRARRGLLVLRELKRDPHRIVA-MMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G ++ +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVMTLNPAQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
 gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
          Length = 822

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 476/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 702


>gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
 gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
          Length = 816

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 476/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 702


>gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)]
 gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)]
          Length = 818

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 287/754 (38%), Positives = 412/754 (54%), Gaps = 51/754 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+ +AA  + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G  GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YETGRGTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++  +K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 R--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L  EI+E   IL S + L  ++  EL +V  +  T RRT ++E            +  + 
Sbjct: 459 LNAEIEELTRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R           G K          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTANDEPLVTEAGAKRVK------HDLIVSAVPATARGEVGVVTSGGR 572

Query: 598 VYKEKVWR---LPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P    A G  L   +SL   E +  +    E     ++  +   
Sbjct: 573 LLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDE-----SSPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         N+     + L   D I+  VE  T + D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPD--YPSNKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           S +R   GR + GV G+ LA G +VIS   V  A
Sbjct: 686 SQVRP-QGRPAGGVAGVKLADGAKVISFTAVDPA 718



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 35/267 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   +D   +  +G   +K    D I+S    T   ++ + T  G
Sbjct: 516 DDPCRVLLSSTGLLARTA-NDEPLVTEAGAKRVK---HDLIVSAVPATARGEVGVVTSGG 571

Query: 704 QCVRFPISA----IRVFAGRNSVGVRG----ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +             N  G       +SL   + V+ +  +  +           
Sbjct: 572 RLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDESSPGLALGTEQG 631

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT    D  V G        EL+  ++ ++ +++     R  
Sbjct: 632 VVKRVVPDYPSNKDELEVITLKDGDRIVGGV-------ELRTGDEDLVFITDDAQLLRYQ 684

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG-----------TL 862
           +   R   R   G+    ++   +   +++   V+     ++ +  G           T 
Sbjct: 685 ASQVRPQGRPAGGVAGVKLADGAK---VISFTAVDPAADAVVFTVAGSRGTLDDSVQTTA 741

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE 889
              P ++     RAT GV      K E
Sbjct: 742 KLTPFDQYPRKGRATGGVRCQRFLKGE 768



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 21/226 (9%)

Query: 681 RDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM- 738
              + +V     ++    L +  G   R   +   +     +  V      K D ++S  
Sbjct: 504 GAPVAAVPLQVADDPCRVLLSSTGLLAR-TANDEPLVTEAGAKRV------KHDLIVSAV 556

Query: 739 ------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  + +        R+  +        + + +      L    S+E +        
Sbjct: 557 PATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTT 616

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L      +   +E+G  KR    D+     +   +    +   + I   V +     ++ 
Sbjct: 617 LDESSPGLALGTEQGVVKRV-VPDYPS---NKDELEVITLKDGDRIVGGVELRT--GDED 670

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++D   L+R   +++R   R   GV     A   +V+S   + 
Sbjct: 671 LVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAVD 716


>gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
 gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
          Length = 816

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 476/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 702


>gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
 gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
          Length = 816

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 702


>gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta]
 gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta]
          Length = 877

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 287/897 (31%), Positives = 486/897 (54%), Gaps = 90/897 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++  I +  + +EM  SY+ YA++VI GRA+PD+RDGLKPVHRRILF M ++ +    
Sbjct: 59  TNDKTRIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEA 118

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCAR+ GEV+GKYHPHG+ A+YD+L RM+Q++S+R +LI G GNFGS+D DPPAA R
Sbjct: 119 PYRKCARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMR 178

Query: 130 YTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTEC+L   +   LL +L   TV++  N+DGS  EP ++ +  P++L+NG  GIAVGMAT
Sbjct: 179 YTECKLSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMAT 238

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGE+V  C+A+IDN +I    L++ +  PDFPTG +I+G    K+ Y  G  SI
Sbjct: 239 SIPPHNLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSI 298

Query: 249 VIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           ++RG  ++E +       +  +++TEIP+Q+NK+ ++ K+A+LV  K I  I+D+RDESD
Sbjct: 299 ILRGKINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESD 358

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIE+KR      I+  + + +SLQ  FS  M+ +   +P    L  IL  F+ F
Sbjct: 359 RKGIRIVIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHF 418

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +++ +  K+ L     + ++L G++I++  +D  +  I+ S N   A+  LM+     
Sbjct: 419 RRKIIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME----- 473

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q+ AIL L+L RLT L    I N+       +
Sbjct: 474 ----------------------FGLSQEQSEAILNLQLRRLTKLESKKIDNDFEITKSSL 511

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTV 542
            E   ILSS   + GIIK ++ ++ +    PR+T ++  + +  +E+ + I   + V+ +
Sbjct: 512 NELKCILSSNILIDGIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIENYESVIMI 571

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +   Y+K++ L  + +Q RG KG+ G+++ D D ++  F  +    ++  SS G  YK K
Sbjct: 572 TQY-YIKKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIK 630

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V R+PI    ++G  +++IL   +  +I++I+     E+     ++V  T+ G ++R  +
Sbjct: 631 VSRIPISKRNSKGTPILSILKGLENNQISSIIATSNCETE---KFLVLLTQKGLIKRTSI 687

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNS 721
           S+F  I+  G I + LD  D +  V  C  ++ ++++TK G+ +RF  S   + +  R S
Sbjct: 688 SNFNNISSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTS 747

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G++ I L   D +    I+                                        
Sbjct: 748 KGIKSIDLDSNDIISDFDIIPS-------------------------------------- 769

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                       +    FI+ ++E G+GKR    + +I  R  KGI+   + + N    L
Sbjct: 770 ------------QAITNFIILLTEMGYGKRIKVTELKIQKRGKKGIKVISLRE-NVNDYL 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++     +N++I++ +  G +++  +++I +  + +KG++I    + ++V  +  I 
Sbjct: 817 ISSRFCIENEEILISTSYGNVVKQKISDIAVQKKNSKGIIIQRLTEGDKVSKISIIN 873



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 83/531 (15%), Positives = 171/531 (32%), Gaps = 97/531 (18%)

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +      +     +  + + + +  IR   + +  R  +  +          I L   S 
Sbjct: 328 QINKSMLIAKLADLVNSKIIQGISDIRDESDRKGIRIVIEIKRDYDPIKIVKIILKKSSL 387

Query: 439 YTIGSDGTMYLSEVQ-----TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
               S   + + + Q      + IL L L     + R +I+ EL ++  +      I  S
Sbjct: 388 QITFSSYMLCIVDKQPILVNLKEILSLFLHFRRKIIRKNIKFELKNILKKKNILKGISIS 447

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             ++   I++   S+                            +    +   G  +    
Sbjct: 448 LEKIDLTIEKIKKSI-------------------------NNLEAKCILMEFGLSQEQSE 482

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           ++   Q R         + D DF       S+   +    S   +    +        + 
Sbjct: 483 AILNLQLRRLTKLESKKI-DNDF---EITKSSLNELKCILSSNILIDGIIKNQIKNISEI 538

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--S 671
            G     +L  +  E I       E E+  N   V+  T++  +++  L  F    R   
Sbjct: 539 YGFPRKTLLINSINENI-----IEELETIENYESVIMITQY-YIKKMFLESFESQTRGTK 592

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GK  + +   DEI    +C   +D++  +  G   +  +S     + RNS G   +S+ K
Sbjct: 593 GKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVS-RIPISKRNSKGTPILSILK 651

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G                                             ++ +   I+   C+
Sbjct: 652 G-------------------------------------------LENNQISSIIATSNCE 668

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E+F++ +++KG  KRTS  +F   +  G  I        +E  +L  V    ++D
Sbjct: 669 ----TEKFLVLLTQKGLIKRTSISNFNNISSRGLIILTL-----DENDSLKWVRKCYNDD 719

Query: 852 QIILVSDKGTLIRVPVN--EIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +I+ + KG L+R   +  E++   R +KG+       ++ +   + I   
Sbjct: 720 SVIISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQ 770


>gi|295396856|ref|ZP_06806984.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
 gi|294974882|gb|EFG50581.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
          Length = 820

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/893 (32%), Positives = 459/893 (51%), Gaps = 99/893 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G   +  + K 
Sbjct: 3   EIQKLTLEEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILFAMFQEGNTSSSNFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G V+G YHPHG++++Y+A+ RM+QDW  R +L+E  GN GS+DGD  AA RYTE R
Sbjct: 63  AKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKNREVLVEMHGNNGSMDGDSAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL DL KDTV+   N+D + +EP VL A +PN+LVNG  GI+ G AT IP HN
Sbjct: 123 LSKIADELLRDLDKDTVEMILNFDDTAEEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D    +ID+P+  ++ LM+ + GPDFPTGA+I G+  +K AY +GRG +V+R   
Sbjct: 183 LGEIIDATTYLIDHPNATINKLMDFVPGPDFPTGAIIQGKEELKKAYTSGRGKVVVRSKH 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE   G +E+IV+TEIPY+VNKA ++ ++ EL   + I  I ++RDE+DR G ++VIEL
Sbjct: 243 HIETDRGGKEKIVITEIPYEVNKANLVRRMDELRLNRSIDGIQEVRDETDRNGLQIVIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ AS+D ILN  Y+ + LQ  ++ NMVA+N  +PE   +   L A++  R E++ RRT 
Sbjct: 303 KKDASSDAILNYFYKNSDLQINYNFNMVAINDQRPELVGIREALNAYIGHRYEIIRRRTT 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA+ R H++ GL  A++ LD+V+  IR S N   +R  L++               
Sbjct: 363 FDLNKAQRRLHIVDGLVKAMSILDQVIATIRNSKNKSDSRYNLIE--------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      + NE   L  +I     ILS  
Sbjct: 408 -----------AFDFSEAQAEAIVSLQLYRLTNTDVTALENERLQLNEDIAAYQAILSDD 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVP 552
             L G +K EL ++K    + RRT I + + ++  +    I  ED+VV V+  GY+KR  
Sbjct: 457 KVLYGRMKSELKAIKKAYASERRTEIQDEIQEVIVKKQLLIPEEDVVVVVTRGGYIKRSS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  ++A      G   V +RD D V  L  +ST   ++F ++ G    + V+ L     +
Sbjct: 517 LRSFKAS-----GIEEVGLRDGDHVQFLEKMSTLDQLVFITNKGNYIFQPVYELQDIRWK 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI----QI 668
             G+ +   ++    E I  +  F  DE+S +N  ++ A+  G +++  LS+F       
Sbjct: 572 DLGEHVSQRIAFASDESIIGV--FKYDENSKDN--LLLASAAGMIKQTALSEFKEFRGYK 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ-----ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           N+S          D+++ V          +  ++L T  G  +R+ I  I +   R + G
Sbjct: 628 NKSSLAMNLSSDTDQVIGVYRIDGATDQSQAQVILVTHFGFTLRYSIDEISIIGVR-AKG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + D V+ ++     D +                                    
Sbjct: 687 VKSINLKQDDYVVGLSYAAVPDDNLQ---------------------------------- 712

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++ V+++G  KR    +  +  R+ +G+ A    K N     VA
Sbjct: 713 ----------------LMMVTQRGHMKRLKWAEINVLGRAKRGLVALKELKSNPH-RFVA 755

Query: 844 VFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            F V D +QI  +V+ +         ++ IA+R + G ++       ++  V 
Sbjct: 756 AFEVIDTNQIFEVVTSQSHREMFRAGDVAIANRYSNGSMLVDEKDHGQISLVT 808



 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 114/277 (41%), Gaps = 22/277 (7%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                VV  T+ G ++R+ L        SG   + L   D +  +E  +  + ++  T  
Sbjct: 498 PEEDVVVVVTRGGYIKRSSL---RSFKASGIEEVGLRDGDHVQFLEKMSTLDQLVFITNK 554

Query: 703 GQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           G  +  P+  ++       +G    + I+ A  + +I    V   D +  + +       
Sbjct: 555 GNYIFQPVYELQDI-RWKDLGEHVSQRIAFASDESIIG---VFKYDENSKDNLLLASAAG 610

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL---------KEQFILTVSEKGFGK 810
             ++    + +E    KN SS+  N+S +  Q + +          +  ++ V+  GF  
Sbjct: 611 MIKQTALSEFKEFRGYKNKSSLAMNLSSDTDQVIGVYRIDGATDQSQAQVILVTHFGFTL 670

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R S  +  I     KG+++ ++ + + +  L      +DN Q+++V+ +G + R+   EI
Sbjct: 671 RYSIDEISIIGVRAKGVKSINLKQDDYVVGLSYAAVPDDNLQLMMVTQRGHMKRLKWAEI 730

Query: 871 RIASRATKG-VVIFSTAKDER--VVSVERIRESEIVD 904
            +  RA +G V +     +    V + E I  ++I +
Sbjct: 731 NVLGRAKRGLVALKELKSNPHRFVAAFEVIDTNQIFE 767


>gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/886 (33%), Positives = 460/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D V+  A + +  + Y                                      
Sbjct: 686 MNLKEDD-VLQSAFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V++   +G L +   
Sbjct: 708 --LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQEFVGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQ +LV S+KGT+  + + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQTLLVQSNKGTIYEIRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 656 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
          Length = 818

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 287/754 (38%), Positives = 412/754 (54%), Gaps = 51/754 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+ +AA  + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G  GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YETGRGTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++  +K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 R--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L  EI+E   IL S + L  ++  EL +V  +  T RRT ++E            +  + 
Sbjct: 459 LNAEIEELSRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R           G K          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTANDEPLVTEAGAKRVK------HDLIVSAVPATARGEVGVVTSGGR 572

Query: 598 VYKEKVWR---LPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P    A G  L   +SL   E +  +    E     ++  +   
Sbjct: 573 LLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDE-----SSPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         N+     + L   D I+  VE  T + D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPD--YPSNKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           S +R   GR + GV G+ LA G +VIS   V  A
Sbjct: 686 SQVRP-QGRPAGGVAGVKLADGAKVISFTAVDPA 718



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 35/267 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   +D   +  +G   +K    D I+S    T   ++ + T  G
Sbjct: 516 DDPCRVLLSSTGLLARTA-NDEPLVTEAGAKRVK---HDLIVSAVPATARGEVGVVTSGG 571

Query: 704 QCVRFPISA----IRVFAGRNSVGVRG----ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +             N  G       +SL   + V+ +  +  +           
Sbjct: 572 RLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDESSPGLALGTEQG 631

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT    D  V G        EL+  ++ ++ +++     R  
Sbjct: 632 VVKRVVPDYPSNKDELEVITLKDGDRIVGGV-------ELRTGDEDLVFITDDAQLLRYQ 684

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG-----------TL 862
           +   R   R   G+    ++   +   +++   V+     ++ +  G           T 
Sbjct: 685 ASQVRPQGRPAGGVAGVKLADGAK---VISFTAVDPAADAVVFTVAGSRGTLDDSVQTTA 741

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE 889
              P ++     RAT GV      K E
Sbjct: 742 KLTPFDQYPRKGRATGGVRCQRFLKGE 768



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 71/226 (31%), Gaps = 21/226 (9%)

Query: 681 RDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM- 738
              + +V     ++    L +  G   R   +   +     +  V      K D ++S  
Sbjct: 504 GAPVAAVPLQVADDPCRVLLSSTGLLAR-TANDEPLVTEAGAKRV------KHDLIVSAV 556

Query: 739 ------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  + +        R+  +        + + +      L    S+E +        
Sbjct: 557 PATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTT 616

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L      +   +E+G  KR    D+     +   +    +   + I   V +     ++ 
Sbjct: 617 LDESSPGLALGTEQGVVKRV-VPDYPS---NKDELEVITLKDGDRIVGGVELRT--GDED 670

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++D   L+R   +++R   R   GV     A   +V+S   + 
Sbjct: 671 LVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAVD 716


>gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
          Length = 812

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 289/892 (32%), Positives = 465/892 (52%), Gaps = 98/892 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIVV+EIPY+VNKA ++++I EL   K++  I+++RD+SDR+G  +VIE
Sbjct: 242 TKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F+ EV+ +RT
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+ 
Sbjct: 408 ------------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL ++      PRRT I +    + +  +  I  ED+VV VSH GY+KR 
Sbjct: 456 PKELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A        +   ++DED+   +  ++    +  F+S G +    ++ +     
Sbjct: 516 SIRSYKAS------GNENGLKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I     F    S       + AT  G+++R KL+D       
Sbjct: 570 KDTGEHISQTIGLDNDEEIIGTFAFS---SLKEKGLFLIATDDGHIKRTKLTDLAPGRTY 626

Query: 672 GKIAMKL----DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            K A       D +  I++++     +    +LL +KLG  +R+ I  + +   R + GV
Sbjct: 627 KKHAYMYEKLKDPKSRIVAIDYLADPDASGKLLLISKLGLALRYGIDEVPINGAR-TTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +LA GD + ++ +V   D                                       
Sbjct: 686 KSQNLADGDVITNLQLVNDDDV-------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I  V+++G  K+ +  +   ++R+ KG+      K N    +   
Sbjct: 708 ---------------IAIVTQRGAFKKLAVKEIPATSRARKGVMILRELKQNSHRVVDFT 752

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              N++  + +++D   +  +  NE  +  R + G  +     +   V + R
Sbjct: 753 VINNEDTPLEVLTDHQRVHDILPNEFSLGGRYSNGSFVIDVESEGTPVKIRR 804



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 14/222 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E+ +++ +  G   R  I + +     N        L   D  I M  +   D  
Sbjct: 495 VIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENG-------LKDEDYPIFMKQMNARDHL 547

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                +     + +     +   DT E  S       +  I          ++   L  +
Sbjct: 548 FMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEKGLFLIAT 607

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGT 861
           + G  KRT   D     R+ K          +    +VA+  + D D   +++L+S  G 
Sbjct: 608 DDGHIKRTKLTDLAP-GRTYKKHAYMYEKLKDPKSRIVAIDYLADPDASGKLLLISKLGL 666

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +R  ++E+ I    T GV   + A  + + +++ + + +++
Sbjct: 667 ALRYGIDEVPINGARTTGVKSQNLADGDVITNLQLVNDDDVI 708



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 18/281 (6%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
              +    D    +   VV  +  G ++R+ +    +  ++      L   D  + ++  
Sbjct: 486 VATIKISTDVIIPDEDVVVMVSHDGYIKRSSI----RSYKASGNENGLKDEDYPIFMKQM 541

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADAD 747
              + + + T  G  +  PI  I         G    + I L   +++I           
Sbjct: 542 NARDHLFMFTSKGNLIYRPIFEI-ADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEK 600

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-----KLKEQFILT 802
               I        + +L                 +    + R   +           +L 
Sbjct: 601 GLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYLADPDASGKLLL 660

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S+ G   R    +  I+     G+++ +++  + I  L     VND+D I +V+ +G  
Sbjct: 661 ISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNL---QLVNDDDVIAIVTQRGAF 717

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
            ++ V EI   SRA KGV+I    K    RVV    I   +
Sbjct: 718 KKLAVKEIPATSRARKGVMILRELKQNSHRVVDFTVINNED 758


>gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
 gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
          Length = 816

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 476/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803

Query: 839 GALVAV 844
             ++  
Sbjct: 804 IEVIDA 809



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS 884
           +  
Sbjct: 743 VMR 745



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 498 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 551

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 552 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 607

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 608 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 668 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 702


>gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
 gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
          Length = 817

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 499 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 552

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 553 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 609 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 669 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 703


>gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
 gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
          Length = 817

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 476/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 499 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 552

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 553 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 609 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 669 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 703


>gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 808

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 280/893 (31%), Positives = 456/893 (51%), Gaps = 92/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++Q+W LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ KDTV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDISVSQLMKYVKGPDFPTGGIIQGIDGIKKAYETGKGRIVVRSTVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R++++VTEIPY+VNK+A+++KI EL  +KR+  I ++RDE+DR G R+ IELK
Sbjct: 245 TETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  ++D ILN LY+ T LQ  ++ NMVA++  +P+   +  I+ +++  + +VV +RT+Y
Sbjct: 305 KDVNSDAILNFLYKNTDLQISYNFNMVAISDGRPKLMGIREIIDSYLNHQIDVVTKRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL  A++ LDEV+ IIR S N + A+  L+                 
Sbjct: 365 DLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I +  +IL +  
Sbjct: 410 -----------FDFTEEQAEAIVTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    T R +RI   + +++      +  E+ ++++S  GY+KR  +
Sbjct: 459 ALLNVIKDELKEIRTRFKTERLSRIEAEIAEIKISKEVIVPSEETILSLSRDGYIKRTSV 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A R    G     +++ D +      +T    L F++ G      V +LP    + 
Sbjct: 519 RSFNANRVDEVG-----LKEGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  ++ +   E +  +   P+ + + +    + ATK+G +++++L  F     +  
Sbjct: 574 LGQHISQLVPIENDEYVLDVFTEPDFKQNAD---YIMATKNGMIKKSELELFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAMKL   DE+++V     +  I + T  G  + +    +     R + GV+ I+L   
Sbjct: 631 LIAMKLKDNDELINVMRIEADQLITIVTHTGMSLTYSTDELSSTGLR-AAGVKSINLKDD 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V    ++   D                                               
Sbjct: 690 DVVEMTQLIQPND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR        + R+ +GI+     K +    +V    ++D + 
Sbjct: 703 ------TILMATQRGAVKRIGFKVLSEAKRAQRGIKLLKELK-SRPHRIVGADVISDPES 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I  +          V++I +  + T G  +  T +   V ++         DE
Sbjct: 756 IYTIYSNKDSFSGKVSDIHLTEQYTNGSFVVDTDEFGEVNALSVSVPETSKDE 808


>gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
 gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
          Length = 817

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 477/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDRPGLDVFLVTYQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDRPGLDVFLVTYQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 499 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 552

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 553 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 609 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDRPGLDVFLVTY 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 669 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 703


>gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 284/885 (32%), Positives = 458/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I         E   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVL---EQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D V+  A + +  + Y                  G  + +++ +  ++      
Sbjct: 686 MNLKEDD-VLQSAFICNTSSFYLLTQ-------------RGSLKRVSTEEIPATSRAKRG 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                               V++   +G L +   
Sbjct: 732 LQVLRELKNKPHRVFLAGA--------------------------VAEQGFVGDLFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DGNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQAAK 543

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  +      E+  +  
Sbjct: 544 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVLEQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
 gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
          Length = 817

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 294/846 (34%), Positives = 476/846 (56%), Gaps = 50/846 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 412 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 628

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744

Query: 782 EGNISEERCQELKLKEQFILTVS---EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              + +   + + + E     ++   +KG        DF I +R+  G  A D  K  E+
Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 804

Query: 839 GALVAV 844
             ++  
Sbjct: 805 IEVIDA 810



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 175/543 (32%), Gaps = 54/543 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 302

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 412

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 413 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 455

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 456 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 508

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 509 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 565

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 566 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 626 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 685

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 686 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 743

Query: 882 IFS 884
           +  
Sbjct: 744 VMR 746



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
               QE+ I+  T+ G   R  + +              I + +GD ++           
Sbjct: 499 VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEE------IGMREGDYLLYSGELSTLDHV 552

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++   A+   R  +       +      ++ I++L  D S+      ++ Q     E+ 
Sbjct: 553 LLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQ----AEKT 608

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            + +S+ G  K+T   +F        + +    +    +    V +        + LV+ 
Sbjct: 609 FVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTH 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +G  +R P+ ++ +      GV   +    +R+++
Sbjct: 669 QGMGLRYPLTDVPVVGAKAAGVKSMNLKDGDRIIN 703


>gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 833

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 292/837 (34%), Positives = 434/837 (51%), Gaps = 66/837 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ 
Sbjct: 14  DFEENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRG 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP-PAAER 129
           +VKCAR+ GEVMGK HPHG++AIYDA+ RMAQ W++R+ L++G GNFGS+ GD  PAA R
Sbjct: 74  HVKCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  ++D + ++TVDFRPNYDG  +EP VL A +PN+LVNG  GIAVGMATN
Sbjct: 134 YTEARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVV     ++++PD  L+ LM+ + GPD PTG +I+G  GI++AYA GRG+  
Sbjct: 194 MAPHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIVGLEGIRDAYAKGRGTFR 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R  + IE  +  R+ IVVTE+PY V    ++ KI +LV+ K++  I+DL+D +DR    
Sbjct: 254 MRATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGL 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K G + + +L +LYR T ++  F +N VAL   +P    L  +L+ +V  R EV
Sbjct: 314 RLVIEVKNGFNPEAVLAELYRLTPMEETFGINNVALVDGQPRTLGLRELLQVYVDHRLEV 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+++   K ++R H++ GL +A+ N+DEV+ IIR S +   A+R LM+         
Sbjct: 374 VRRRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLME--------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  LSE+Q + IL+  L RLT   R ++  E   LG EI    
Sbjct: 425 -----------------TFELSEIQAQYILDTPLRRLTRFDRLELEKESEQLGKEIARLT 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLG 546
            IL S  +L  ++ +EL  V  +  TPRRT ++E            +  E  +V +S  G
Sbjct: 468 AILESDRKLRKLVAKELGEVAKKFSTPRRTVLLESSGQTAAAVPLEVPDEPCLVLLSSTG 527

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            + R           G            D +  +   +T   V   +S G + K +V  L
Sbjct: 528 LLARTAGPGPLPAESG--------SGPHDVLAAVVRATTRGEVGLVTSAGRMIKVEVLDL 579

Query: 607 PIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           P   P       A G  +    +L  GER+  +        + +   +   T+ G V+R 
Sbjct: 580 PALPPGDGPPSLAGGAPISEYTTLADGERVVGLGSL-----TGHGPGLALGTEQGVVKRV 634

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   NR     + L   D ++  VE  + E+D++  T   Q +R+  + +R   GR
Sbjct: 635 VPD--YPANREEFEVISLKDGDRVVGAVELASDEHDLVFITSDAQLLRYAAANVRP-QGR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI L++G +VI    V   D D + R+  +   SA          +++      
Sbjct: 692 AAAGMAGIKLSEGARVIWFGTV---DPDRESRVVTIAGSSAALPGTQNGAVKVSDYAVFP 748

Query: 780 SVEGNISEERCQELKLKEQFIL----------TVSEKGFGKRTSSYDFRISNRSGKG 826
                    R       E  +L           VSE G      +   R      K 
Sbjct: 749 RKGRATGGVRSHRFLKGEDVLLRAWAGPAPLRAVSEAGKTVELPAELGRRDGSGDKL 805



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 29/230 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS----VGVRGIS----LAKGD 733
           D + +V   T   ++ L T  G+ ++  +  +      +      G   IS    LA G+
Sbjct: 548 DVLAAVVRATTRGEVGLVTSAGRMIKVEVLDLPALPPGDGPPSLAGGAPISEYTTLADGE 607

Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +V+ + ++  H           +          + +  E+ SLK+   V G +      E
Sbjct: 608 RVVGLGSLTGHGPGLALGTEQGVVKRVVPDYPANREEFEVISLKDGDRVVGAV------E 661

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E  ++ ++      R ++ + R   R+  G+    +S+      ++    V+ + +
Sbjct: 662 LASDEHDLVFITSDAQLLRYAAANVRPQGRAAAGMAGIKLSEGAR---VIWFGTVDPDRE 718

Query: 853 IILVSDKGTLIRVP--------VNE---IRIASRATKGVVIFSTAKDERV 891
             +V+  G+   +P        V++        RAT GV      K E V
Sbjct: 719 SRVVTIAGSSAALPGTQNGAVKVSDYAVFPRKGRATGGVRSHRFLKGEDV 768



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E+G  KR    D+   NR  +      +   + +  + AV   +D   ++ ++    L+
Sbjct: 626 TEQGVVKRV-VPDYPA-NR--EEFEVISLKDGDRV--VGAVELASDEHDLVFITSDAQLL 679

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVV 892
           R     +R   RA  G+     ++  RV+
Sbjct: 680 RYAAANVRPQGRAAAGMAGIKLSEGARVI 708


>gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K]
          Length = 821

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 285/886 (32%), Positives = 454/886 (51%), Gaps = 96/886 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K 
Sbjct: 3   DEAQKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+A+ R++QDW LR  LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV DG V +ID+PD  L+ +M  ++GPDFPTG ++ G  GIK AY TGRG +V+
Sbjct: 183 PPHNLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGILQGLDGIKKAYETGRGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I++  G+REQIV++EIPY+VNKA M++KI EL   K++  I+++RDESDR G  V
Sbjct: 243 RAKTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGLSV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A +  ILN L++ T LQ  ++ NMVA++  +P++  L+ IL A++  +EEVV 
Sbjct: 303 VIELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQVGLLEILHAYLKHQEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DR H++ GL  A++ LD+V+  IR S N + A+  L+ +          
Sbjct: 363 RRTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLVAQ---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      +  E   L   +     I
Sbjct: 413 ----------------YDFTEAQAEAIVSLQLYRLTNTDVTALEAEAAELKTAVAGYQAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +IK EL SV       R+T I   +   +++    ++ E ++V VSH GY+
Sbjct: 457 LGNPKELARVIKAELKSVVKAYRNDRKTEIEAEIETLEIDTSVTVIDETVMVAVSHDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A      G     +++ DF      + T   ++ F++ G + +  V  +  
Sbjct: 517 KRSSLRSYQASEGADGG-----LKEGDFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIAD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ- 667
              +  G+ +   + L   E I     F  +E S    Y V  T  G +++    D +  
Sbjct: 572 LKWKEMGEHISQSIGLAADEAIIAAFSFTPNEQSG---YFVIGTTDGYIKQTAFQDLLPS 628

Query: 668 --INRSGKIAMKLDSRDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVFAGRNS 721
                  +  +KL +   + +V   ++ +     I   +  G  + F ++ + V +G  +
Sbjct: 629 RTYRSKAQDFIKLHAGANVTNVYWVSETDAQQQAIFSASYNGYGLSFALNEVSV-SGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ + L  GD V +  +   A+                                    
Sbjct: 688 GGVKLMDLKDGDHVANFTLFDPAE------------------------------------ 711

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         K   +  ++++G  KR    +  +++R+ +G+      K +    +
Sbjct: 712 --------------KHAAVAIITQRGAFKRMFLSEVGLTSRARRGVLILRELKRDPH-RV 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A+  V     +++ +++  L+ +         R + G  +    +
Sbjct: 757 AAMVRVAPKIALLVKTEQ-ALLTIDPQAHATGDRYSNGSFVMDVEE 801



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 14/265 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +   +V  +  G ++R+ L        S      L   D  +  +     + ++L T  G
Sbjct: 503 DETVMVAVSHDGYLKRSSL---RSYQASEGADGGLKEGDFAILQQPMQTLDQLMLFTNYG 559

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADY----DERICYMK 756
             ++ P+  I        +G    + I LA  + +I+       +            Y+K
Sbjct: 560 HLIQRPVHEIADL-KWKEMGEHISQSIGLAADEAIIAAFSFTPNEQSGYFVIGTTDGYIK 618

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEER-CQELKLKEQFILTVSEKGFGKRTSSY 815
             + Q  L S                 N++      E   ++Q I + S  G+G   +  
Sbjct: 619 QTAFQDLLPSRTYRSKAQDFIKLHAGANVTNVYWVSETDAQQQAIFSASYNGYGLSFALN 678

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +  +S     G++  D+   + +       P   +  + +++ +G   R+ ++E+ + SR
Sbjct: 679 EVSVSGAKAGGVKLMDLKDGDHVANFTLFDPAEKHAAVAIITQRGAFKRMFLSEVGLTSR 738

Query: 876 ATKGVVIFSTAKDE--RVVSVERIR 898
           A +GV+I    K +  RV ++ R+ 
Sbjct: 739 ARRGVLILRELKRDPHRVAAMVRVA 763



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
            T   E  ++  +  G   R       + + + S G  G  L +GD     AI+      
Sbjct: 499 VTVIDETVMVAVSHDGYLKRSS-----LRSYQASEGADG-GLKEGD----FAILQQPMQT 548

Query: 748 YDERICYMKHMSAQRRLISGDTE-------EITSLKNDSSVEGNISEERCQELKLKEQFI 800
            D+ + +  +    +R +    +       E  S     + +  I          +  + 
Sbjct: 549 LDQLMLFTNYGHLIQRPVHEIADLKWKEMGEHISQSIGLAADEAIIAAFSFTPNEQSGYF 608

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ----IILV 856
           +  +  G+ K+T+  D   S       +A D  K++    +  V+ V++ D     I   
Sbjct: 609 VIGTTDGYIKQTAFQDLLPSR--TYRSKAQDFIKLHAGANVTNVYWVSETDAQQQAIFSA 666

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           S  G  +   +NE+ ++     GV +      + V +      +E
Sbjct: 667 SYNGYGLSFALNEVSVSGAKAGGVKLMDLKDGDHVANFTLFDPAE 711


>gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
 gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  566 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 293/894 (32%), Positives = 458/894 (51%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKEANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++    A  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDAYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL +  G  +RF I  + V     + GV+ 
Sbjct: 631 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISLNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D + S  I        +    Y+       + +S D    TS            
Sbjct: 689 MNLKEDDTLQSAFI-------CNTSSFYLLTQRGSLKRVSIDEIPATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G L +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFST-E 767

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V     I +
Sbjct: 768 VEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEVFDAYIIVK 821


>gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 812

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 289/892 (32%), Positives = 465/892 (52%), Gaps = 98/892 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIVV+EIPY+VNKA ++++I EL   K++  I+++RD+SDR+G  +VIE
Sbjct: 242 TKIEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F++EV+ +RT
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQQEVIKKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+ 
Sbjct: 408 ------------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL ++      PRRT I +    + +  +  I  ED+VV VSH GY+KR 
Sbjct: 456 PKELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A        +   ++DED+   +  ++    +  F+S G +    ++ +     
Sbjct: 516 SIRSYKAS------GNENGLKDEDYPIFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I     F    S       + AT  G+++R KL+D       
Sbjct: 570 KDTGEHISQTIGLDNDEEIIGTFAFS---SLKEKGVFLIATDDGHIKRTKLTDLAPGRTY 626

Query: 672 GKIAMKL----DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            K A       D    I++++     +    +LL +KLG  +R+ I  + +   R + GV
Sbjct: 627 KKHAYMYEKLKDPESRIVAIDYLADPDASGKLLLISKLGLALRYGIDEVPINGAR-TTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +LA GD + ++ +V   D                                       
Sbjct: 686 KSQNLADGDVITNLKLVNDDDV-------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I  V+++G  K+ +  +   ++R+ KG+      K N    +   
Sbjct: 708 ---------------IAIVTQRGAFKKLAVKEIPATSRARKGVMILRELKQNSHRVVDFT 752

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              N++  + +++D   +  +  NE  +  R + G  +     +   V + R
Sbjct: 753 VIDNEDTPLEVLTDHQRVHDILPNEFSLGGRYSNGSFVIDVESEGTPVKIRR 804



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 94/281 (33%), Gaps = 18/281 (6%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
              +    D    +   VV  +  G ++R+ +    +  ++      L   D  + +   
Sbjct: 486 VATIKISTDVIIPDEDVVVMVSHDGYIKRSSI----RSYKASGNENGLKDEDYPIFMRQM 541

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADAD 747
              + + + T  G  +  PI  I         G    + I L   +++I           
Sbjct: 542 NARDHLFMFTSKGNLIYRPIFEI-ADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEK 600

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-----KLKEQFILT 802
               I        + +L                 +    E R   +           +L 
Sbjct: 601 GVFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPESRIVAIDYLADPDASGKLLL 660

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S+ G   R    +  I+     G+++ +++  + I  L     VND+D I +V+ +G  
Sbjct: 661 ISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNL---KLVNDDDVIAIVTQRGAF 717

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
            ++ V EI   SRA KGV+I    K    RVV    I   +
Sbjct: 718 KKLAVKEIPATSRARKGVMILRELKQNSHRVVDFTVIDNED 758



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 14/222 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E+ +++ +  G   R  I + +     N        L   D  I M  +   D  
Sbjct: 495 VIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENG-------LKDEDYPIFMRQMNARDHL 547

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                +     + +     +   DT E  S       +  I          ++   L  +
Sbjct: 548 FMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEKGVFLIAT 607

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGT 861
           + G  KRT   D     R+ K          +    +VA+  + D D   +++L+S  G 
Sbjct: 608 DDGHIKRTKLTDLAP-GRTYKKHAYMYEKLKDPESRIVAIDYLADPDASGKLLLISKLGL 666

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +R  ++E+ I    T GV   + A  + + +++ + + +++
Sbjct: 667 ALRYGIDEVPINGARTTGVKSQNLADGDVITNLKLVNDDDVI 708


>gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
 gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
          Length = 812

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 290/892 (32%), Positives = 465/892 (52%), Gaps = 98/892 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIVV+EIPY+VNKA ++++I EL   KR+  I+++RD+SDR+G  +VIE
Sbjct: 242 TKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F+ EV+ +RT
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+ 
Sbjct: 408 ------------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL ++      PRRT I +    + +  +  I  ED+VV VSH GY+KR 
Sbjct: 456 PKELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A        +   ++DED+   +  ++    +  F+S G +    ++ +     
Sbjct: 516 SIRSYKAS------GNENGLKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I     F    S       + AT  G+++R KL+D       
Sbjct: 570 KDTGEHISQTIGLDNDEEIIGTFAFS---SLKEKGLFLIATDDGHIKRTKLTDLAPGRTY 626

Query: 672 GKIAMKL----DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            K A       D +  I++++     +    +LL +KLG  +R+ I  + +   R + GV
Sbjct: 627 KKHAYMYEKLKDPKSRIVAIDYLADLDASGKLLLISKLGLALRYGIDEVPINGAR-TTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +LA GD + ++ +V   D                                       
Sbjct: 686 KSQNLADGDVITNLQLVNDDDV-------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I  V+++G  K+ +  +   ++R+ KG+      K N    +   
Sbjct: 708 ---------------IAIVTQRGAFKKLAVKEIPATSRARKGVMILRELKQNSHRVVDFT 752

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              N++  + +++D   +  +  NE  +  R + G  +     +   V + R
Sbjct: 753 VINNEDTPLEVLTDHQRVHDILPNEFSLGGRYSNGSFVIDVESEGTPVKIRR 804



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 18/281 (6%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
              +    D    +   VV  +  G ++R+ +    +  ++      L   D  + ++  
Sbjct: 486 VATIKISTDVIIPDEDVVVMVSHDGYIKRSSI----RSYKASGNENGLKDEDYPIFMKQM 541

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADAD 747
              + + + T  G  +  PI  I         G    + I L   +++I           
Sbjct: 542 NARDHLFMFTSKGNLIYRPIFEI-ADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEK 600

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK-----LKEQFILT 802
               I        + +L                 +    + R   +           +L 
Sbjct: 601 GLFLIATDDGHIKRTKLTDLAPGRTYKKHAYMYEKLKDPKSRIVAIDYLADLDASGKLLL 660

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S+ G   R    +  I+     G+++ +++  + I  L     VND+D I +V+ +G  
Sbjct: 661 ISKLGLALRYGIDEVPINGARTTGVKSQNLADGDVITNL---QLVNDDDVIAIVTQRGAF 717

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
            ++ V EI   SRA KGV+I    K    RVV    I   +
Sbjct: 718 KKLAVKEIPATSRARKGVMILRELKQNSHRVVDFTVINNED 758



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 78/222 (35%), Gaps = 14/222 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E+ +++ +  G   R  I + +     N        L   D  I M  +   D  
Sbjct: 495 VIIPDEDVVVMVSHDGYIKRSSIRSYKASGNENG-------LKDEDYPIFMKQMNARDHL 547

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                +     + +     +   DT E  S       +  I          ++   L  +
Sbjct: 548 FMFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEKGLFLIAT 607

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGT 861
           + G  KRT   D     R+ K          +    +VA+  + D D   +++L+S  G 
Sbjct: 608 DDGHIKRTKLTDLAP-GRTYKKHAYMYEKLKDPKSRIVAIDYLADLDASGKLLLISKLGL 666

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +R  ++E+ I    T GV   + A  + + +++ + + +++
Sbjct: 667 ALRYGIDEVPINGARTTGVKSQNLADGDVITNLQLVNDDDVI 708


>gi|284031379|ref|YP_003381310.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810672|gb|ADB32511.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 816

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 292/857 (34%), Positives = 414/857 (48%), Gaps = 98/857 (11%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             +  E+ E+ I  V ++DEM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +  
Sbjct: 7   TTAEPEDFEERILDVDVSDEMRTSFLEYAYSVIYSRALPDARDGLKPVQRRILFSMAENN 66

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++ +VK AR+ GEVMGKYHPHG+ AIYDAL R AQ WS+R+ LI+G GNFGS+D D 
Sbjct: 67  IRPDRGHVKSARVVGEVMGKYHPHGDGAIYDALVRTAQPWSMRVPLIDGHGNFGSLD-DG 125

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+   A  + + L ++ VDF+PNYDG  +EP VL A +PN+LVNG  GIAV
Sbjct: 126 PAAMRYTECRMAPPAMAMTNGLDENVVDFKPNYDGQEEEPAVLPAAFPNLLVNGAAGIAV 185

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNL EVV     +I +P  DLD LM  + GPD PTG  I+G  GIK+AYATG
Sbjct: 186 GMATNMAPHNLVEVVQALRHLIKHPKADLDDLMRFVPGPDLPTGGKIVGLEGIKDAYATG 245

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R  + IE  +  R+ IVVTE+PY V    ++EKI  LV+ K++  IAD++D +D
Sbjct: 246 RGSFKMRATARIENVTPRRKGIVVTELPYTVGPEKVIEKIKTLVQAKKLQGIADVKDLTD 305

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T L+  FS+N V L   +P    L  +L  ++ 
Sbjct: 306 RSHGTRLVIEVKNGFVPEALLEQLYKLTPLEDSFSINAVCLVDGQPRTLGLRELLDVYLE 365

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +V  RR+++   KA+DR H++ GL IA+ ++DEV++IIR S +   AR  L+     
Sbjct: 366 HRYDVTRRRSEFRRKKAQDRLHIVDGLLIAILDIDEVIQIIRSSDDAGAARTRLID---- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQ   IL++ L RLT   + ++  E   L  E
Sbjct: 422 ----------------------IYDLSEVQANYILDMPLRRLTKFSKLELETEKAELERE 459

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           I++   IL   + L  I+ +EL  V     TPRRT ++E             +  +   V
Sbjct: 460 IEKLTAILEDEALLRKIVSEELADVAKTYGTPRRTVLLESSGAAKTAAVPLEVTDDPCWV 519

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G + R            G+GR+       D +      +        +S G + +
Sbjct: 520 LMSSAGLLARTNGVEP---FGDGEGRA-----KHDAIVSAVKSTARGQYGLITSAGRLIR 571

Query: 601 EKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            +   LP     A       G  +   + L  GER   +           ++ V   T  
Sbjct: 572 LESLDLPAVPTTANAPNLQGGAPIAEFVELEAGERALALTTM-----DPESVGVALGTAT 626

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R         +    I  +L   D ++  VE  T E ++       Q + F  S +
Sbjct: 627 GVVKRVVPDHLSNRDSWEII--RLADGDRVVGAVELATGEEELCFIASDAQLLHFNASVV 684

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + G+ GI L+ G +V+    V  A                             
Sbjct: 685 RP-QGRTAGGMAGIRLSAGAKVVFFGAVDPA----------------------------- 714

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                         E            L  +E G  K T   ++    R   G+R   + 
Sbjct: 715 -------------RESHVVTVAGSSSALPGTEVGAVKVTPFSEYPGKGRGTGGVRCQRLL 761

Query: 834 KINEIGAL--VAVFPVN 848
           K  +   L  V   PV 
Sbjct: 762 KGEDGLLLGFVGTAPVK 778



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 89/296 (30%), Gaps = 41/296 (13%)

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G     +L  + G   T  +P        ++   V  +  G + R           +G  
Sbjct: 489 GTPRRTVLLESSGAAKTAAVPL----EVTDDPCWVLMSSAGLLART----------NGVE 534

Query: 675 AMKLDSR----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRG 726
                      D I+S    T      L T  G+ +R     +          N  G   
Sbjct: 535 PFGDGEGRAKHDAIVSAVKSTARGQYGLITSAGRLIRLESLDLPAVPTTANAPNLQGGAP 594

Query: 727 I----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSV 781
           I     L  G++ +++  +                       +S  D+ EI  L +   V
Sbjct: 595 IAEFVELEAGERALALTTMDPESVGVALGTATGVVKRVVPDHLSNRDSWEIIRLADGDRV 654

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            G +      EL   E+ +  ++        ++   R   R+  G+    +S   ++   
Sbjct: 655 VGAV------ELATGEEELCFIASDAQLLHFNASVVRPQGRTAGGMAGIRLSAGAKVVFF 708

Query: 842 VAVFPVNDNDQIILV--------SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            AV P  ++  + +         ++ G +   P +E     R T GV      K E
Sbjct: 709 GAVDPARESHVVTVAGSSSALPGTEVGAVKVTPFSEYPGKGRGTGGVRCQRLLKGE 764



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 35/229 (15%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            T +   +L +  G   R             + GV      +G +    AIV    +   
Sbjct: 512 VTDDPCWVLMSSAGLLAR-------------TNGVEPFGDGEG-RAKHDAIVSAVKSTAR 557

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS----- 804
            +   +       RL S D   + +  N  +++G        EL+  E+ +   +     
Sbjct: 558 GQYGLITSAGRLIRLESLDLPAVPTTANAPNLQGGAPIAEFVELEAGERALALTTMDPES 617

Query: 805 -------EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                    G  KR       +SNR    I    ++  + +  + AV      +++  ++
Sbjct: 618 VGVALGTATGVVKRVVPD--HLSNRDSWEI--IRLADGDRV--VGAVELATGEEELCFIA 671

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIV 903
               L+    + +R   R   G+     +   +VV   +V+  RES +V
Sbjct: 672 SDAQLLHFNASVVRPQGRTAGGMAGIRLSAGAKVVFFGAVDPARESHVV 720


>gi|229031252|ref|ZP_04187258.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
 gi|228730010|gb|EEL80984.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
          Length = 807

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 465/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV +
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTK 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEKEADELSTKIAELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + N++SL + E I      P  E      ++VF TK+G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANLVSLERDEMIIWATVVPNFEE--EKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 104/262 (39%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G    +L   + D++I  A V+    +    I ++      ++  
Sbjct: 562 LPVYEMPEI-RWKDLGQHVANLVSLERDEMIIWATVVPNFEEEKRFIVFVTKNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +E            I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 99/284 (34%), Gaps = 30/284 (10%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E  T I        S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALEKEADELSTKIAELQAILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD     
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGD----- 536

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----- 793
            ++   D +  E +    +      L   +  EI        V   +S ER + +     
Sbjct: 537 ILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIWATV 596

Query: 794 ----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               + +++FI+ V++ G  K+T    +++  R  +   A ++ K +E   +V +F  + 
Sbjct: 597 VPNFEEEKRFIVFVTKNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDG 652

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 818

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/754 (38%), Positives = 415/754 (55%), Gaps = 51/754 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMS 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+ +A   + D + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I +P+ DLDALM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YETGRGTFKMRATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFTVVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            LS+VQT+ IL+  L RLT   R ++  E + 
Sbjct: 425 Q--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELETEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVRED 537
           L  EI+E   IL S + L  ++  EL +V  +  T RRT ++E  G         +  + 
Sbjct: 459 LNAEIEELTRILESDAELRKLVSSELATVAKKFGTDRRTDLLESGGAPVATVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A+  G K          D +      +    +   +S G 
Sbjct: 519 CRVLLSSTGLLARTANGEPFAENAGAKRVK------HDVIVSAVPATARGEIGAVTSAGR 572

Query: 598 VYKEKVWR---LPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P    A G  L   LSL   E +  +    E     ++  +   
Sbjct: 573 LLRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVCLTTLDE-----SSPGLAIG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         ++     + L   D I+  VE  T + D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPD--YPSHKEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           S +R   GR + GV GI LA+G +VIS   V  A
Sbjct: 686 SVVRP-QGRPAGGVAGIKLAEGVKVISFTAVDPA 718



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 87/274 (31%), Gaps = 35/274 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +    N   K        D I+S    T   +I   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANGEPFAENAGAKRVKH----DVIVSAVPATARGEIGAVTSAG 571

Query: 704 QCVRFPISA----IRVFAGRNSVGVRGI----SLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +             N  G   +    SL   + V+ +  +  +           
Sbjct: 572 RLLRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVCLTTLDESSPGLAIGTEQG 631

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT  + D  V          EL+  ++ ++ +++     R  
Sbjct: 632 VVKRVVPDYPSHKEELEVITLKEGDRIVGAV-------ELRTGDEDLVFITDDAQLLRYQ 684

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG-----------TL 862
           +   R   R   G+    +++  +   +++   V+     ++ +  G           T 
Sbjct: 685 ASVVRPQGRPAGGVAGIKLAEGVK---VISFTAVDPAADAVVFTVAGSRGTLDDSVQTTA 741

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              P ++     RAT GV      K E  +S+  
Sbjct: 742 KLTPFDQYPRKGRATGGVRCQRFLKGEDCLSLAW 775



 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-----TSLKNDSSVE 782
            L K D++         +A+ +E    ++  +  R+L+S +   +     T  + D    
Sbjct: 443 RLTKYDRIELETEKDRLNAEIEELTRILESDAELRKLVSSELATVAKKFGTDRRTDLLES 502

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G             +   + +S  G   RT++ +    N   K +         +   +V
Sbjct: 503 GGAPVATVPLQVADDPCRVLLSSTGLLARTANGEPFAENAGAKRV---------KHDVIV 553

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA------TKGVVI---FSTAKDERVVS 893
           +  P     +I  V+  G L+R+ V ++     +        G  +    S   DE VV 
Sbjct: 554 SAVPATARGEIGAVTSAGRLLRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVC 613

Query: 894 VERIRES 900
           +  + ES
Sbjct: 614 LTTLDES 620


>gi|306825060|ref|ZP_07458402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432496|gb|EFM35470.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 826

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 290/886 (32%), Positives = 459/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL  + K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQYIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIQKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVSILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 HFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +      I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKTAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +     +++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  + +  T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQVAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLVSRNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D++ +  I        +    Y+       + +S D    TS            
Sbjct: 686 MNLKAEDELQAAFI-------CNTSSFYLLTQRGSLKRVSIDEIPATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G L +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 92/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKI--AMKLDSRDEIL 685
           T ++   E+E+       + A   G    +      +  ++ +         L+   +++
Sbjct: 430 TDVVVLQEEEAELREKTAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKVI 489

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
              +     +E+  +  TK G   R             +  +  I     D++I + +  
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQVAK 543

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           LVS  G  +R  + E+ +      GV   +   ++ + +
Sbjct: 658 LVSRNGYALRFNIEEVPVVGAKAAGVKAMNLKAEDELQA 696


>gi|163941203|ref|YP_001646087.1| DNA topoisomerase IV subunit A [Bacillus weihenstephanensis KBAB4]
 gi|163863400|gb|ABY44459.1| DNA topoisomerase IV, A subunit [Bacillus weihenstephanensis KBAB4]
          Length = 807

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 290/884 (32%), Positives = 464/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EP+VL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  ++ L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RL  +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLFQVIKTDLKRVKKTYSDNRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  ++L F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKYFG-----MKEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + N++SL + E +      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANLVSLERDESLIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAFRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 104/262 (39%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          ILL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-YFGMKEGDILLERFDTNTTETILLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G    +L   + D+ +  A V+    +    I ++      ++  
Sbjct: 562 LPVYEMPEI-RWKDLGQHVANLVSLERDESLIWATVVPNFEEEKRFIVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +E            I+  +   +    +  +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L+ V  T    V++    +   I       +K+
Sbjct: 434 ITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSDNRRAIIEEEIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD     
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKYFGMKEGD----- 536

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----- 793
            ++   D +  E I    +      L   +  EI        V   +S ER + L     
Sbjct: 537 ILLERFDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLIWATV 596

Query: 794 ----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               + +++FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  + 
Sbjct: 597 VPNFEEEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDG 652

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              I+L +     +     E+        GV   +  +D+ V S
Sbjct: 653 TSDIVLATHGAYALVFNEEEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius]
          Length = 803

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/736 (35%), Positives = 416/736 (56%), Gaps = 41/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GI+ AY TG+G +++R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGGIVQGIDGIRKAYETGKGKVIVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLVA---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E + L  +I     IL +  
Sbjct: 409 ----------TYDFTETQAEAIVMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +   PR + I E + +++ +    +  E ++++++  GY+KR  L
Sbjct: 459 ALLNVIKDELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T   V+ F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + ER+       +     +   ++ AT+ G ++++ LS F     S  
Sbjct: 574 LGQHVSQIVPIEEDERVVNCYTVSDFN---DEHAIITATRQGMIKKSLLSGFKSTRTSKP 630

Query: 673 KIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +AMK+   D ++SV           I L T  G  + +P+S +     R + G++ I+L
Sbjct: 631 LVAMKVKEGDALISVMYVPANAASQCITLLTHRGMSLTYPMSELPDTGLR-AAGIKAINL 689

Query: 730 AKGDQVISMAIVLHAD 745
              D V+    +   D
Sbjct: 690 KDEDHVVLADHIQPQD 705



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 104/280 (37%), Gaps = 59/280 (21%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I+ I    ++    +   ++  T+ G ++R  L      N SGK  + L  RD +L 
Sbjct: 484 EEKISEI-KIDKEVIVPSETVMLSLTQAGYIKRTSL---RSFNASGKEEIGLKERDGVLK 539

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLH 743
           +     ++ +++ T  G+ +  P+  +        +G    + + + + ++V++   V  
Sbjct: 540 IIETNTQDYVMVFTNKGRYLLIPVHKL-PDVKWKDLGQHVSQIVPIEEDERVVNCYTVSD 598

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +                                                   E  I+T 
Sbjct: 599 FN--------------------------------------------------DEHAIITA 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  K++    F+ + R+ K + A  V + + + +++ V     +  I L++ +G  +
Sbjct: 609 TRQGMIKKSLLSGFKST-RTSKPLVAMKVKEGDALISVMYVPANAASQCITLLTHRGMSL 667

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             P++E+        G+   +   ++ VV  + I+  + +
Sbjct: 668 TYPMSELPDTGLRAAGIKAINLKDEDHVVLADHIQPQDTI 707


>gi|229012771|ref|ZP_04169940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
 gi|229134400|ref|ZP_04263213.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|229168313|ref|ZP_04296038.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228615139|gb|EEK72239.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228649021|gb|EEL05043.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|228748452|gb|EEL98308.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
          Length = 807

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 464/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EP+VL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  ++ L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RL  +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLFQVIKTDLKRVKKTYSDNRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKYFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + N++SL + E +      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANLVSLERDESLIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAFRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 104/262 (39%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-YFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G    +L   + D+ +  A V+    +    I ++      ++  
Sbjct: 562 LPVYEMPEI-RWKDLGQHVANLVSLERDESLIWATVVPNFEEEKRFIVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +E            I+  +   +    +  +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L+ V  T    V++    +   I       +K+
Sbjct: 434 ITALEQEAAELSKKIIELQSILQSEKRLFQVIKTDLKRVKKTYSDNRRAIIEEEIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD     
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKYFGMKEGD----- 536

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----- 793
            ++   D +  E +    +      L   +  EI        V   +S ER + L     
Sbjct: 537 ILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLIWATV 596

Query: 794 ----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               + +++FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  + 
Sbjct: 597 VPNFEEEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFATDG 652

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              I+L +     +     E+        GV   +  +D+ V S
Sbjct: 653 TSDIVLATHGAYALVFNEEEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|28378500|ref|NP_785392.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum WCFS1]
 gi|254556714|ref|YP_003063131.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300767446|ref|ZP_07077358.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180657|ref|YP_003924785.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271336|emb|CAD64241.1| topoisomerase IV, subunit A [Lactobacillus plantarum WCFS1]
 gi|254045641|gb|ACT62434.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300495265|gb|EFK30421.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046148|gb|ADN98691.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 816

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 281/836 (33%), Positives = 442/836 (52%), Gaps = 46/836 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K +
Sbjct: 4   EQPKIQELTLEDVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNQDGNTFDKAF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+A+ R++QDW LR  LIE  GN GS+DGDP AA RYT
Sbjct: 64  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP
Sbjct: 124 EARLSKIAGEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  + ++++P   L+ LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R
Sbjct: 184 PHNLSEVIDAILFLMNHPKATLEDLMDFVKGPDFPTGGIIQGLAGIKQAYETGRGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I    G++ QI V+EIPY+VNKA +++KI E+   K+I  IA++RDESDRQG  VV
Sbjct: 244 SRTKIVPLKGNKSQIEVSEIPYEVNKAQLVKKIDEIRILKKIEGIAEVRDESDRQGLSVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR  +A+ IL  L + T LQ  ++ NMVA+   +PE   L  IL A++  + +VV R
Sbjct: 304 IELKRDVNAEGILTYLLKNTDLQITYNFNMVAIYHQRPEHVGLKTILTAYLEHQRDVVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DR H++ GL  A++ LD+V++ IR S + + A++ L+ +           
Sbjct: 364 RTQFNLQKAMDRQHIVQGLIKAMSILDQVIKTIRGSKDKKDAKQNLVSQ----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE+Q  AI+ ++L RLT      +  E   L   I     IL
Sbjct: 413 ---------------FDFSEIQAEAIVTMQLYRLTNTDVTQLEKESAELAKAIATYQLIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
           +    L  ++++EL +V+    T R T I   + +  ++ E  I +ED++V +SH GY+K
Sbjct: 458 AEPKELDKVLRRELKAVQKAYPTSRLTEIQNEIQELKVKTEVVIPQEDVIVMISHDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A      G     ++DED+   L   ST   ++ F+++G +    ++ +   
Sbjct: 518 RTSLRSYSASEPDDNG-----LKDEDYPIYLAKNSTLDHLMMFTNMGHLIYRPIYEIADA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ-- 667
             +  G+ +   + L + ERIT +  F   +++      + AT  G +++   +D+    
Sbjct: 573 KWKDTGEHISQTIGLAENERITWVYSFENLKATGK---FLVATSDGYIKQTAFADYTPGR 629

Query: 668 --INRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               R+ +          +++VE         ++L T+ G  +R+ +S +       +VG
Sbjct: 630 TYKTRASQFIKMKSDDATVVTVEYLPAAPTGTLILITQHGYGLRYDLSEVPTIGA-KAVG 688

Query: 724 VRGISLAKGDQVISMAIVLHAD--ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           V+ + L   D ++   I    D  A   +R  + K   A   + S     +  L+   + 
Sbjct: 689 VKSMDLR-DDAIVRATIAADDDLIAMITQRGSFKKMKVADLPVTSRARRGVQVLRELKNN 747

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              +++            +  ++++G      + D   S R   G    D     E
Sbjct: 748 PHRVADYVLVASDANGVALDVLTDRGKHHSILNDDHPTSARYSNGSFVVDTDTEGE 803



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 90/248 (36%), Gaps = 15/248 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  +  G ++R  L      + S      L   D  + +   +  + +++ T +G  + 
Sbjct: 507 IVMISHDGYIKRTSL---RSYSASEPDDNGLKDEDYPIYLAKNSTLDHLMMFTNMGHLIY 563

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD----ERICYMKHMSA 760
            PI  I   A     G    + I LA+ +++  +    +  A           Y+K  + 
Sbjct: 564 RPIYEI-ADAKWKDTGEHISQTIGLAENERITWVYSFENLKATGKFLVATSDGYIKQTAF 622

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                    +   S       +                 ++ +++ G+G R    +    
Sbjct: 623 ADYTPGRTYKTRASQFIKMKSDDATVVTVEYLPAAPTGTLILITQHGYGLRYDLSEVPTI 682

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                G+++ D+       A+V      D+D I +++ +G+  ++ V ++ + SRA +GV
Sbjct: 683 GAKAVGVKSMDL----RDDAIVRATIAADDDLIAMITQRGSFKKMKVADLPVTSRARRGV 738

Query: 881 VIFSTAKD 888
            +    K+
Sbjct: 739 QVLRELKN 746



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 80/223 (35%), Gaps = 17/223 (7%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               QE+ I++ +  G   R  + +    +  +  G++       D+   + +  ++  D
Sbjct: 499 VVIPQEDVIVMISHDGYIKRTSLRSYSA-SEPDDNGLK-------DEDYPIYLAKNSTLD 550

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-----ILT 802
           +      M H+  +      D +   + ++ S   G    ER   +   E        L 
Sbjct: 551 HLMMFTNMGHLIYRPIYEIADAKWKDTGEHISQTIGLAENERITWVYSFENLKATGKFLV 610

Query: 803 VSEKGFGKRTSSYDFRISNRS--GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
            +  G+ K+T+  D+    R+   +  +   +   +     V   P      +IL++  G
Sbjct: 611 ATSDGYIKQTAFADYTP-GRTYKTRASQFIKMKSDDATVVTVEYLPAAPTGTLILITQHG 669

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             +R  ++E+        GV      +D+ +V      + +++
Sbjct: 670 YGLRYDLSEVPTIGAKAVGVKSMDL-RDDAIVRATIAADDDLI 711


>gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
 gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
          Length = 826

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 296/886 (33%), Positives = 458/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +     +++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQTAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I         +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D + + A + +  + Y                                      
Sbjct: 686 MNLKANDALQA-AFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V +   IG L +   
Sbjct: 708 --LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVVEQGFIGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQI+LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKI--AMKLDSRDEIL 685
           T ++   E+E+       + A   G    +      +  ++ +         L+   +++
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKVI 489

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
              +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQTAK 543

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +   ++ + +
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKANDALQA 696


>gi|229018786|ref|ZP_04175635.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
 gi|228742536|gb|EEL92687.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
          Length = 807

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 464/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINHRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  ++L F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + N+++L + E +      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANLVTLERDETLIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S                                                   
Sbjct: 688 LKEDDYVASG-------------------------------------------------- 697

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + L  ++  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 698 --KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ I + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELIYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 96/283 (33%), Gaps = 28/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALEQEAAELSKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEEIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS- 737
           D            QE+ I+  TK G   R        +   N+   +   + +GD ++  
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGDILLER 541

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                    ++     +Y     Y       + L       +T  ++++ +   +     
Sbjct: 542 FDTNTTETILLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVTLERDETLIWATVVPNFE 601

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +E +    FI+ V+  G  K+T    +++  R  +   A ++ K +E   +V +F  +  
Sbjct: 602 EEKR----FIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKEDE---VVDIFATDGT 653

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 654 SDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 793

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 313/887 (35%), Positives = 496/887 (55%), Gaps = 104/887 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRIL+   ++G+  NK + K
Sbjct: 3   EEIYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAHKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEV+GK+HPHG++A+YDAL RMAQD++ R  LI+G GNFGS+DGD  AA RYTE 
Sbjct: 63  SARLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYTET 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + A  LL+++ ++TV FR N+DG+ QEP VL ++ PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 KLTEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           NL EV+D  + +++ P+  LD +++  + GPDFPTGA I+G  GIK+AY  G+G I++R 
Sbjct: 183 NLAEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIVGNEGIKSAYENGKGKIILRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S IEK  G  + I++TEIPYQ+NK+ ++E+IAELV + ++  ++DLRDESD+ G R++I
Sbjct: 243 KSKIEKE-GRHKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIRILI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            LK GA  ++ LN+LY+YTS+QS F +N++AL+  KP+   L+ IL  F+ FR+EV+   
Sbjct: 302 ALKSGADPELTLNRLYKYTSMQSSFRINLLALDNKKPKVMGLLEILNHFIEFRKEVIKNH 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY LNK+ +R H+L GL IA+  LD V++IIR S     A+ +L+++            
Sbjct: 362 TKYNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQ------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         + +SEVQ ++IL+++L RL G+  + +  E   L  +IKE   IL+
Sbjct: 410 --------------LNISEVQAQSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILT 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
               L   +K EL  +KD+    RRT I+E     ++  +D I  ++ VV++S+ G +KR
Sbjct: 456 EEKTLKEYLKNELKEMKDKFADKRRTTIIEDDEKAEINKQDLIKEKEAVVSLSYRGIIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
              +   +  R  K          D++      S+   +LFFS  G VY  +V  L    
Sbjct: 516 ---NEEYSNLRAAK---------NDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHH 563

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A G  L   + L   E I ++      + +  N + VF T+ G ++R    ++   N 
Sbjct: 564 GLATGDNLSKYMQLPLEENIISLNILS--KKNKQNNFYVFVTESGQIKRTAAKEYET-NY 620

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           S   A+KLD  D++++VE   +++ I++ ++ G  +RF   +     GRN++G + I LA
Sbjct: 621 SHIRAIKLD-NDKLINVEKAEEKDQIMIISQNGYAIRFKGKSFSS-TGRNTMGSKAIKLA 678

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D+V + +I             + K+        +G   +I                  
Sbjct: 679 KNDKVTAFSI-------------FNKNKYLVSVTETGRANKI------------------ 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                                     FR+  R+G+G R       N+   L       +N
Sbjct: 708 ----------------------KLSQFRLQKRNGRGQRIFS----NQNYKLAGAAFCEEN 741

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++I++ +  G +  V V++I   S       I      E++  V++I
Sbjct: 742 EKILIAAKNGEMYTVEVDKIPETSPGGNMYQITKNIDFEKITRVKKI 788


>gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
 gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
          Length = 826

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 295/886 (33%), Positives = 461/886 (52%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSALEDTANVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + S    E I       + E +        AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITSFETNEEILYAEVVDQFEDAI---TYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S D    TS            
Sbjct: 686 MNLKEDD-------VLQSSFICNTSSFYLLTQRGSLKRVSIDEIPATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   IG L +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGLIGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSALEDTANVI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ ITS + +  +      ++ ++  
Sbjct: 544 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITSFETNEEILYAEVVDQFED-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 602 --AITYFAATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|256851123|ref|ZP_05556512.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660547|ref|ZP_05861462.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932238|ref|ZP_06337682.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297205988|ref|ZP_06923383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256616185|gb|EEU21373.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548269|gb|EEX24244.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303633|gb|EFA95791.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297149114|gb|EFH29412.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 826

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 279/893 (31%), Positives = 443/893 (49%), Gaps = 93/893 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++ + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K 
Sbjct: 3   QKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL D+ KDTV+   N+D +  EP VL A++PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  + ++ +P+  L  LM+ ++GPDFPTGA++LG  GIK AY +GRG I +
Sbjct: 183 PPHNLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVLGDKGIKEAYESGRGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+     R+QIVVTEIP+ VNKA +++KI E+   K I  I+++RDE+DR G  +
Sbjct: 243 RAKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+GA +  ILN L++ T LQ  +S NMVA++   P +  L  IL +++    +V+ 
Sbjct: 303 VIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDADVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTKY L+KA+ R  ++ GL  A+  LD+V++ IR S N   A+  ++ +          
Sbjct: 363 KRTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ L+L RLT    + ++ E + L  +I     +
Sbjct: 413 ----------------FSFTPRQAEAIVSLQLYRLTNTDVNALQAEKSDLEEKIASYDLL 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+ R  L   I +EL +VK E  + RRT+I      ++++++  +  ED+ V VS  GY+
Sbjct: 457 LTDRKVLEKQIIKELNAVKKEFGSERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  +++      G     + D D V     +ST T++  F++ G V    V  L  
Sbjct: 517 KRSSLRSFQSTNDSENG-----LPDFDKVVFEKTMSTLTNLYIFTNKGNVIFRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L+  E+I  +    + +S  N    + AT  G +++  L+D    
Sbjct: 572 AKWKEPGQHLSQELGLDTDEQIIAVFELAKLDSRLN---FLLATNDGYIKQLALADIQPT 628

Query: 669 N---RSGKIAMKLDS-RDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   IAMKL      ++ VE  + +   +I L T     VR+ ++ I     R + 
Sbjct: 629 RTYKSRAMIAMKLKETASRVVRVEMISPDTKKEITLFTNHAYAVRYDVNEIPTSGAR-AA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D V+    VL                                        
Sbjct: 688 GVKSVNLKDDDFVVDYVTVLPE-------------------------------------- 709

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                       L    +  V+++G  K          +R+ +G+      K N    + 
Sbjct: 710 -----------YLDMMKLGIVTQRGAFKEFKYELINKVSRAKRGVLVLRELKKNPH-RIA 757

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            V     N ++++ +     + +  N+  +  R + G  +     D    S+ 
Sbjct: 758 GVVLFAQNHELLVETSSARTMTIKTNDFPLGDRYSNGSFVIDPIGDGEPTSLT 810



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 92/280 (32%), Gaps = 20/280 (7%)

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
           +  E+I +      D        +    +   V++   S+      S    +++D +   
Sbjct: 445 DLEEKIASYDLLLTDRKVLEKQIIK---ELNAVKKEFGSERRTKISSKTAKIEIDEK--- 498

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIV 741
                  +E+  +L ++ G   R  + + +      +       L   D+V+   +M+ +
Sbjct: 499 ---ALVAEEDVRVLVSRDGYLKRSSLRSFQSTNDSENG------LPDFDKVVFEKTMSTL 549

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            +     ++     + +         +  +  S +     +  I               L
Sbjct: 550 TNLYIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVFELAKLDSRLNFL 609

Query: 802 TVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
             +  G+ K+ +  D + +     + + A  + +       V +   +   +I L ++  
Sbjct: 610 LATNDGYIKQLALADIQPTRTYKSRAMIAMKLKETASRVVRVEMISPDTKKEITLFTNHA 669

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVS-VERIRE 899
             +R  VNEI  +     GV   +   D+ VV  V  + E
Sbjct: 670 YAVRYDVNEIPTSGARAAGVKSVNLKDDDFVVDYVTVLPE 709


>gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6]
 gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6]
          Length = 823

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 286/885 (32%), Positives = 457/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +EK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +     +++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 STRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDDTDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKT 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D V+  A + +  + Y                                      
Sbjct: 686 MNLKEDD-VLQSAFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V++   IG L +   
Sbjct: 708 --LTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFIGDLFSTDM 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKVI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E+  +  TK G   R    +        +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTSTRSF------AASTLEEIGKRDDDRLIFVQAAK 543

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +    +  + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTTLGNVIYRPIHELADTRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          ++   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDDTDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKTMNLKEDDVLQS 696


>gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
 gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
          Length = 826

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 285/885 (32%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G + +R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVAVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I         +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V +   + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVSA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D + +  I        +    Y+       + +S D    TS            
Sbjct: 686 MNLKADDALQAAFI-------CNTSSFYLLTQRGSLKRVSIDEIPATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G L +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFSTEM 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810


>gi|270290231|ref|ZP_06196456.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304384955|ref|ZP_07367301.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
 gi|270281012|gb|EFA26845.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304329149|gb|EFL96369.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
          Length = 817

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 276/836 (33%), Positives = 445/836 (53%), Gaps = 55/836 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G   +K 
Sbjct: 3   DNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+Q+W LR+ LIE  GN GS+D DPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +L D+ K+TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GEV+D  +  I +PD  L+ LME ++GPDFPTG ++ GR G+K AY TGRG +V+
Sbjct: 183 PPHNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGGIVQGRDGLKQAYKTGRGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++QI +TEIPY+VNKA +++KI E+   K+I  IA++RDESDR+G  +
Sbjct: 243 RSRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDESDREGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+   A  +LN L + T LQ  ++ NMVA+N  +PER  L  I++A+V F++EV+ 
Sbjct: 303 AIELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLRPERMGLKPIIQAYVDFQKEVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA  R H++ GL  A++ LD+V++ IR S + + A+  L++R          
Sbjct: 363 KRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  +I+ L+L RLT     +++ E   L   I E   I
Sbjct: 413 ----------------FDFSEKQAESIVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+  ++L  ++  EL  VK +  TPR + I + + +++ +    +  E ++V VS  GY+
Sbjct: 457 LNDPAKLSRVLSAELRKVKKQYATPRLSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A            ++D D       +ST   +L F++ G +    V+ +  
Sbjct: 517 KRSSLRSYKAS------ADEDGLKDGDQPVFKHELSTLDHLLMFTNKGNLIYRPVYEITE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ- 667
              +  G+ +   + L   E I         +   N    + AT  G +++  L D    
Sbjct: 571 ARWKDTGEHVSQTIGLADDEIILKAYDVKNFKQPIN---FLIATDDGYIKQTALQDLKPG 627

Query: 668 --INRSGKIAMKLDS-RDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNS 721
               +      KL     ++++V     +     ILL ++ G  +R+ +  I     R +
Sbjct: 628 RTYRKKAITYAKLKKQGAKVVNVVQVDPKTAPATILLASEHGYGLRYDLVEIPTVGPR-A 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ + L   DQV +  +V   D     +I  + +  + +R+   +    +  +    +
Sbjct: 687 AGVKSMDLR-DDQVANFVLVNDED-----QIGLITNRGSFKRMKVSEISVTSRARRGVQI 740

Query: 782 EGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
              + +E  + + +    + Q    ++ +G        +  ++ R   G    D+ 
Sbjct: 741 LRELKKEPHRVVDIAVVNEHQAFEVLTSRGLVHDILPMEHPLNERYSNGSFVIDID 796



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 102/272 (37%), Gaps = 19/272 (6%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                +V  ++ G ++R+ L    +  ++      L   D+ +     +  + +L+ T  
Sbjct: 502 PEEQVMVLVSQAGYLKRSSL----RSYKASADEDGLKDGDQPVFKHELSTLDHLLMFTNK 557

Query: 703 GQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           G  +  P+  I   A     G    + I LA  + ++    V +     +  I       
Sbjct: 558 GNLIYRPVYEITE-ARWKDTGEHVSQTIGLADDEIILKAYDVKNFKQPINFLIATDDGYI 616

Query: 760 AQRRLISGDTEEITSLKNDSSVE-----GNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            Q  L           K  +  +       +      + K     IL  SE G+G R   
Sbjct: 617 KQTALQDLKPGRTYRKKAITYAKLKKQGAKVVNVVQVDPKTAPATILLASEHGYGLRYDL 676

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            +         G+++ D+        +     VND DQI L++++G+  R+ V+EI + S
Sbjct: 677 VEIPTVGPRAAGVKSMDL----RDDQVANFVLVNDEDQIGLITNRGSFKRMKVSEISVTS 732

Query: 875 RATKGVVIFSTAKDE--RVVSVERIRESEIVD 904
           RA +GV I    K E  RVV +  + E +  +
Sbjct: 733 RARRGVQILRELKKEPHRVVDIAVVNEHQAFE 764


>gi|73916872|gb|AAZ93304.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 455/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +      AT+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
 gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
          Length = 826

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/885 (31%), Positives = 457/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEVIYVEVV---DQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D V+  A + +  + Y                  G  + +++ +  ++      
Sbjct: 686 MNLKEDD-VLQSAFICNTSSFYLLTQ-------------RGSLKRVSTEEIPATSRAKRG 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                               V++   +G L +   
Sbjct: 732 LQVLRELKNKPHRVFLAGA--------------------------VAEQGFVGDLFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +   +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENYQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  V      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEVIYVEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|73916908|gb|AAZ93322.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +      AT+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
 gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
          Length = 826

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 291/886 (32%), Positives = 456/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I         +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVV---DQFDDATTYFVATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KATGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D + + A + +  + Y                                      
Sbjct: 686 MNLKADDALQA-AFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V++    G L +   
Sbjct: 708 --LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFFGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFVATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +   D+ + +
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQA 696


>gi|183603372|ref|ZP_02714487.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
 gi|183571363|gb|EDT91891.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
          Length = 826

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
 gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
          Length = 801

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/734 (34%), Positives = 425/734 (57%), Gaps = 37/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGGIIQGLDGIKKAYESGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R++++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSEAIKNFLYKNSDLQISYNFNMVAISDGRPKLMGIKQIIDSYINHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E + L   IK+   IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++ +  T R + I   + +  ++ E  +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKNELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G S V ++D D +     V+T  + L F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+S+++ E++  +  F E + +    + + AT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVSIDEDEQVIDV--FNEKDFNQREAFYIMATRNGMIKKSSVPQFKTTRYNKP 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAMK+  +DE++++     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 632 LIAMKVKEQDEVINIMRVESDQLITVVTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDE 690

Query: 733 DQVISMAIVLHADA 746
           D V+   ++ H+++
Sbjct: 691 DFVVMTQMINHSES 704



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 90/250 (36%), Gaps = 19/250 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-----CTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +I +  K         EI  ++         E  +L  T+ G   R    +     
Sbjct: 466 NELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTSTRSF---- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
             N+ GV  + L  GD ++    V   D         R  ++              + ++
Sbjct: 522 --NASGVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVS 579

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            + +    E  I     ++   +E F +  +  G  K++S   F+ + R  K + A  V 
Sbjct: 580 QIVSIDEDEQVIDVFNEKDFNQREAFYIMATRNGMIKKSSVPQFKTT-RYNKPLIAMKVK 638

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + +E   ++ +  V  +  I +V+ KG  +    NE+        GV   +   ++ VV 
Sbjct: 639 EQDE---VINIMRVESDQLITVVTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFVVM 695

Query: 894 VERIRESEIV 903
            + I  SE V
Sbjct: 696 TQMINHSESV 705


>gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 291/886 (32%), Positives = 454/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA +RDESDR G R+  E
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAFE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +     V T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFAQAVKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVV---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKTVKYAKLKDETDQIVAVAPIKLDD-VLLISRNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D V+  A + +  + Y                                      
Sbjct: 686 MNLKEDD-VLQSAFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +      V++   +  L +   
Sbjct: 708 --LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLTGAVAEQGFVVDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V+ NDQI+LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VDGNDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E+  +  TK G   R             +  +  I     D++I    V 
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFAQAVK 543

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   V+  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAVTRLGQIKRVERKEFTPW-RTYKSKTVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISRNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|253731988|ref|ZP_04866153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724398|gb|EES93127.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 800

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGVDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 841

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 289/818 (35%), Positives = 418/818 (51%), Gaps = 58/818 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     + D++ ++ I  + +  EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 4   MPRRTTAPDQDFQERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VK +R+ GEVMGK HPHG+AAIYDAL RMAQ +S+RL L++G GNFGS 
Sbjct: 64  SEMGLRPDRGHVKSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSP 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  ++  + ++TVDFRPNYDG   EP VL A +PN+LVNG  
Sbjct: 124 D-DAPAAMRYTEARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGAS 182

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+     ++  PD  LD LM+ + GPD PTG +I+G   I+ A
Sbjct: 183 GIAVGMATNIPPHNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGGLIIGLDAIREA 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R  + IE  +  R+ IVVTE+P+ V    ++ KI ELV+ K++V IADL+
Sbjct: 243 YETGRGTFRMRARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLK 302

Query: 301 DESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR    R+VIE+K G + + +L +LYR T ++  F +N VAL   +P    L  +L 
Sbjct: 303 DLTDRHKGLRLVIEVKTGFNPEAVLEELYRLTPMEETFGINSVALVDGQPRTLGLRDLLA 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  R EVV RR+ Y   K  +R H++ GL  A+ N+DEV+++IR S +P  AR  LM+
Sbjct: 363 VYVNHRLEVVRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLME 422

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                     T  LSE Q   IL+  L RLT   + ++  E   
Sbjct: 423 --------------------------TFGLSEAQAGYILDTPLRRLTRYDKLELEREKEG 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVRE 536
           L  EI E   IL S  RL  ++ +EL  V  +  TPRRT++    E  L       +  +
Sbjct: 457 LQAEIAELNAILGSEDRLRRVVSKELAEVAKKYGTPRRTQLLDSAEAALKTAIPLEVADD 516

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V +S  G + R       A    G G         D +      +    V   +S G
Sbjct: 517 PCLVLLSSTGLIARTA----DASPLPGDGPRAP----HDVLVSAVRTTVRGEVGVITSKG 568

Query: 597 FVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  LP           A  + +   ++L   E +  +    E         +  
Sbjct: 569 RMIRVSVVELPTLPASGDPPSLAGAQPVTEYVTLEPDEHVVGLGSLDE-----AGHGIAL 623

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFP 709
            T  G V+R        +NR     + L   D ++  VE  + ++D++  T   Q +RFP
Sbjct: 624 GTAQGVVKRVAPD--YPVNRDDFEIISLREGDRVVGAVELESPDHDLVFITSDAQLLRFP 681

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GR + GV GI LA+G +VI    V  A       +          +  +   
Sbjct: 682 AATVRP-QGRPAGGVAGIRLAEGARVIWFGAVDPARESRVVTVAGSSTALPGTQTGTVKV 740

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +           G +  +R     LK + +L ++  G
Sbjct: 741 SDYAVFPPKGRATGGVRAQRF----LKGEDVLLLAWAG 774



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 98/299 (32%), Gaps = 33/299 (11%)

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G      L  +    + T +P        ++  +V  +  G + R    D   +   G  
Sbjct: 490 GTPRRTQLLDSAEAALKTAIPL----EVADDPCLVLLSSTGLIARTA--DASPLPGDGPR 543

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA----GRNSVGVRGIS-- 728
           A      D ++S    T   ++ + T  G+ +R  +  +          +  G + ++  
Sbjct: 544 APH----DVLVSAVRTTVRGEVGVITSKGRMIRVSVVELPTLPASGDPPSLAGAQPVTEY 599

Query: 729 --LAKGDQVISMAIVLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             L   + V+ +  +  A           +    A    ++ D  EI SL+    V G +
Sbjct: 600 VTLEPDEHVVGLGSLDEAGHGIALGTAQGVVKRVAPDYPVNRDDFEIISLREGDRVVGAV 659

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 EL+  +  ++ ++      R  +   R   R   G+    +++   +    AV 
Sbjct: 660 ------ELESPDHDLVFITSDAQLLRFPAATVRPQGRPAGGVAGIRLAEGARVIWFGAVD 713

Query: 846 PVNDNDQIILV--------SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P  ++  + +         +  GT+            RAT GV      K E V+ +  
Sbjct: 714 PARESRVVTVAGSSTALPGTQTGTVKVSDYAVFPPKGRATGGVRAQRFLKGEDVLLLAW 772


>gi|325978153|ref|YP_004287869.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178081|emb|CBZ48125.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 819

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 295/894 (32%), Positives = 462/894 (51%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+ ++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKAIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E    + +     ATK G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFATDESVL----YAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   ++ D ++++     ++ +++ T  G  + F I  + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V S A V + D+                    G  + + +    ++   N  
Sbjct: 685 INLKDDDFVAS-AFVANTDS-------------FFILTQRGSLKRMATELIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                       G    + DV  ++    L  +  
Sbjct: 731 LQVLRELKSKPHRVFMA--------------------GPVHASNDVQNLD----LFTIST 766

Query: 847 VNDND-QII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V+ +D +I+ + S+KG + +  + ++ ++ R + G  I     DE V S  RI+
Sbjct: 767 VDSDDVEILEVHSNKGAVYQAILEDLNLSERTSNGSFISDKISDEGVFS-ARIK 819


>gi|238855704|ref|ZP_04646001.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|260664459|ref|ZP_05865311.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932218|ref|ZP_06337665.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|313472143|ref|ZP_07812635.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|238831689|gb|EEQ24029.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|239529512|gb|EEQ68513.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|260561524|gb|EEX27496.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303668|gb|EFA95823.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
          Length = 826

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/893 (31%), Positives = 441/893 (49%), Gaps = 93/893 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++ + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K 
Sbjct: 3   QKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL D+ KDTV+   N+D +  EP VL A++PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  + ++ +PD  L  LM+ ++GPDFPTGA++LG  GIK AY TGRG I +
Sbjct: 183 PPHNLAEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVLGDKGIKEAYETGRGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+     R+QIVVTEIP+ VNKA +++KI E+   K I  I+++RDE+DR G  +
Sbjct: 243 RSKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+GA +  ILN L++ T LQ  +S NMVA++   P +  L  IL +++   E V+ 
Sbjct: 303 VIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDEAVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y L KA+ R  ++ GL  A+  LD+V++ IR S N   A+  ++++          
Sbjct: 363 KRTQYDLKKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ L+L RLT    + ++ E + L  +I     +
Sbjct: 413 ----------------FSFTPRQAEAIVSLQLYRLTNTDVNALQAEKSDLEEKIANYNLL 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+ R  L   I +EL +VK E  + RRT+I      ++++++  +  ED+ V VS  GY+
Sbjct: 457 LTDRKVLEKQIIKELNAVKKEFGSDRRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  +++      G     + D D V     +ST T++  F++ G V    V  L  
Sbjct: 517 KRSSLRSFQSTDDSENG-----LPDFDKVVFEKTMSTLTNLYLFTNKGNVIFRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L+  E+I ++    + +   N    V AT  G +++  L+D    
Sbjct: 572 AKWKEPGQHLSQELGLDTDEQIVSVFELAKLDEKLN---FVLATNDGYIKQLALADIQPT 628

Query: 669 N---RSGKIAMKLD-SRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   IAMKL      ++ VE    +   +I L T     VR+ IS I     R + 
Sbjct: 629 RTYKSRAMIAMKLKQDTSRVIHVEGVVPDTKKEITLFTNQAYAVRYDISEIPTSGAR-AA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D V+    V                                         
Sbjct: 688 GVKSVNLKDDDYVVDYVTVDPK-------------------------------------- 709

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                       L    +  ++++G  K          +R+ +G+      K N    + 
Sbjct: 710 -----------YLNLMKLGIITQRGAFKEFKYELINKVSRAKRGVLVLRELKKNPH-RIS 757

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            V     N ++I+ +     + +  N+  +  R + G  +     D    S+ 
Sbjct: 758 GVALFGQNHELIIETSSARTMTIKTNDFPLGDRYSNGSFVIDPVGDGEPTSLT 810


>gi|73916826|gb|AAZ93281.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916834|gb|AAZ93285.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916902|gb|AAZ93319.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 456/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E    I+     +   +      AT+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + + ++      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 455/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +      AT+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|302023679|ref|ZP_07248890.1| DNA topoisomerase IV subunit A [Streptococcus suis 05HAS68]
 gi|330832704|ref|YP_004401529.1| topoisomerase IV subunit A [Streptococcus suis ST3]
 gi|329306927|gb|AEB81343.1| topoisomerase IV subunit A [Streptococcus suis ST3]
          Length = 817

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 293/885 (33%), Positives = 453/885 (51%), Gaps = 82/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   +++ +  E I     F E   ++        T++G ++R +  +F     
Sbjct: 571 KDIGEHLSQTLMNFDTSEEII----FAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D+ D +++V     ++ I+L T+ G  +RF I  + +     + GV+ 
Sbjct: 627 YKSKSTKYAKLKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L  GD V++  I           +  +    + +R+ + +    +  K    V     
Sbjct: 685 VNLKDGDVVVAAFI------SNTSSVYLLTQRGSFKRMATEEIPVTSRAKRGLQV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +           T   DF +             S  NE      +  
Sbjct: 734 ---LRELKAKPHRVFAAG----PVLTDQGDFDL------------FSTANEDETTSQILH 774

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V         S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 775 VQ--------SKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E   +  TK G   R            N+  +  +     DQ+I +    
Sbjct: 490 EIDTASLIVEEETFVSVTKAGYIKRTS------PRSFNASTLEEMGKRDDDQLIFLQNAK 543

Query: 743 HAD-----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                    +    I    H     R          +L N  + E  I  E  +    +E
Sbjct: 544 TTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENF--EE 601

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                V++ G  KR    +F          ++T  +K+ +   +V        D I+L++
Sbjct: 602 GTYFAVTQYGQIKRVERKEFTPWR--TYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMT 659

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +KG  +R  + E+ I      GV   +    + VV+
Sbjct: 660 EKGYALRFNIEEVPIIGAKAAGVKAVNLKDGDVVVA 695


>gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
 gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
          Length = 826

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 294/903 (32%), Positives = 464/903 (51%), Gaps = 86/903 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  I  AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEINKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +EK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I         +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIRLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D + + A + +  + Y                                      
Sbjct: 686 MNLKADDALQA-AFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V++   +G L +   
Sbjct: 708 --LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V     ++E    D+
Sbjct: 765 VEENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEVFD-AYLKEVFKEDK 823

Query: 906 AES 908
           A S
Sbjct: 824 ASS 826


>gi|253753461|ref|YP_003026602.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|253755713|ref|YP_003028853.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|226237529|dbj|BAH47277.1| topoisomerase IV subunit A [Streptococcus suis]
 gi|251818177|emb|CAZ55975.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|251819707|emb|CAR45533.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|292558209|gb|ADE31210.1| topoisomerase IV, subunit A [Streptococcus suis GZ1]
 gi|319757994|gb|ADV69936.1| topoisomerase IV subunit A [Streptococcus suis JS14]
          Length = 817

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 293/885 (33%), Positives = 452/885 (51%), Gaps = 82/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 408 ------------SYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   +++ +  E I     F E   ++        TK+G ++R +  +F     
Sbjct: 571 KDIGEHLSQTLMNFDTNEEII----FAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D+ D +++V     ++ I+L T+ G  +RF I  + +     + GV+ 
Sbjct: 627 YKSKSTKYAKLKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D V++ A + +  + Y                  G  + + + +   +      
Sbjct: 685 VNLKDED-VVAAAFISNTSSVYLLTQ-------------RGSLKRMATEEIPVTSRAKRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +           T   DF +             S  NE      +  
Sbjct: 731 LQVLRELKAKPHRVFAAG----PVLTDQGDFDL------------FSTANEDDTTSQILH 774

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V         S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 775 VQ--------SKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 74/219 (33%), Gaps = 21/219 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E   +  TK G   R            N+  +  +     DQ+I +    
Sbjct: 490 EIDTASLIVEEETFVSVTKAGYIKRTS------PRSFNASTLEEMGKRDDDQLIFLQNAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ + +   +  +      E  +E  
Sbjct: 544 TTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFAELVENFEE-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   V++ G  KR    +F          ++T  +K+ +   +V        D I+
Sbjct: 602 ---GTYFAVTKYGQIKRVERKEFTPWR--TYKSKSTKYAKLKDAEDVVITVSPVVLDDIM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+++KG  +R  + E+ I      GV   +   ++ V +
Sbjct: 657 LMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDEDVVAA 695


>gi|73916866|gb|AAZ93301.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 455/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E    I+     +   +      AT+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + + ++      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 455/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916932|gb|AAZ93334.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +      AT+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
 gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
          Length = 825

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 289/885 (32%), Positives = 461/885 (52%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +     +++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +  V T   +L F++LG V    V  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLLFVQSVKTTQHLLIFTTLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEVIYVEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VLLISRNGYALRFNIEEVPVIGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D VI  A + +  + Y      + H  + +R        ++  +  ++   N  
Sbjct: 686 MNLKADD-VIQAAFICNTSSFY-----LLTHRGSLKR--------VSIEEIPATSRANRG 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                               VS+   +G L +   
Sbjct: 732 LQVLRELKSKPHRVFLAGA--------------------------VSEQGFVGDLFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +    +++ S+ GT     + ++ ++ R + G  I  T  DE V
Sbjct: 766 EDGEQTLVIQSNNGTTYEAILQDLNLSERTSNGSFISDTISDEEV 810



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 95/281 (33%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKI--AMKLDSRDEIL 685
           T ++   E+E+       + A   G    +      +  ++ +         L+   +++
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKVI 489

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
              +     +E+  +  TK G   R             +  +  I     D+++ +  V 
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLLFVQSVK 543

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  V      ++  +  
Sbjct: 544 TTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVIYVEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 604 T----YFAATRLGQIKRVERKEFSPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++L+S  G  +R  + E+ +      GV   +   D+ + +
Sbjct: 656 VLLISRNGYALRFNIEEVPVIGAKAAGVKAMNLKADDVIQA 696


>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
 gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
          Length = 818

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/891 (31%), Positives = 453/891 (50%), Gaps = 93/891 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++  PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKYPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYRTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R+ L   I +EL +VK E   PRRT+I E     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRATLEKEIIKELNAVKKEFANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST T++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTNDDDNG-----LPDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F +  +  N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQIIRVFVFDKLNTDCN---FILATNDGYIKQLELANLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D  ++ V+    +N   I L T     +R+ +S I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKGKDSYVVGVDLIKSDNHKEITLFTHRAYAIRYDVSEI-PTSGAKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D +++  +V     D                                     
Sbjct: 689 KSANLKDDDYIVNYVLVDSKYVDL------------------------------------ 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  ++++G  K+         +R+ +G+      K N+   +VA+
Sbjct: 713 -------------MHVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK-NKPHRIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            P   +  + + +     + +   +  +  R + G  +  T  D   VS+E
Sbjct: 759 MPYAQDHLLHVTTSSDRHVNIKTTDYPLGDRYSNGSFVIDTTVDGTPVSIE 809


>gi|14531024|gb|AAK63177.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 292/886 (32%), Positives = 456/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAESVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +       T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASAIDEIGK-----RDDDRLIFGQSAKTIQHLLMFTSLGNVIYPPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+                               
Sbjct: 686 MNLKEDD-------VLQSGFICNTSSFYL------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   +  +      KR       + N+  +   A  VS+   +G L +   
Sbjct: 708 --LTQRGSLKRVSVEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVSEQGFVGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEENDQTLLVQSNKGTIYENRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS----- 737
           EI +     +E+  +  TK G   R             +  +  I     D++I      
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASAIDEIGKRDDDRLIFGQSAK 543

Query: 738 ---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +      +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TIQHLLMFTSLGNVIYPPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 703

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/742 (38%), Positives = 417/742 (56%), Gaps = 104/742 (14%)

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--GD 262
           +IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  S +E     G 
Sbjct: 2   LIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGG 61

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVVIEL+RG   +V
Sbjct: 62  RQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEV 121

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV RRT + L KAR+
Sbjct: 122 ILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARE 181

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID------- 435
           R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + ++++          
Sbjct: 182 RGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPE 241

Query: 436 --DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
             D  Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  +I E + IL+S
Sbjct: 242 NLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNS 300

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+SH GY K  PL
Sbjct: 301 ATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQPL 360

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           +VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K + +P  S  A
Sbjct: 361 AVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAA 420

Query: 614 RGKALINILSLNQGERITTIMPFP----------------------------EDE----- 640
           RG+ L+N+L L+ GE ITT++P                              E+E     
Sbjct: 421 RGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARI 480

Query: 641 ---SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
                    ++  +T +G V++  L  F +   SG IA++LD  D ++S      E +I+
Sbjct: 481 KAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIM 540

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+  RF  S +R    R + GVRG+ L +G ++ISM                   
Sbjct: 541 LFSDGGKVTRFKESDVRAMG-RTARGVRGMRLPEGQKLISML------------------ 581

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                      I EE  Q        ILT SE+G+GKRT+  +F
Sbjct: 582 ---------------------------IPEEGSQ--------ILTASERGYGKRTAISEF 606

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R G+G+ A   ++ N  G LV    V D ++I+L+SD+GTL+R  V E+    R T
Sbjct: 607 PEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNT 664

Query: 878 KGVVIFSTAKDERVVSVERIRE 899
           +GV +   A DE++V +ER++E
Sbjct: 665 QGVTLIKLASDEKLVGLERVQE 686


>gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 453/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 289/886 (32%), Positives = 457/886 (51%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN  ++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYFFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+S 
Sbjct: 408 ------------SYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++ G V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFIQSAKTTQHLLMFTTFGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVV---DQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIKLDD-VVLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + +  I        +    Y+       + +S D    TS            
Sbjct: 686 INLKADDALQAAFI-------CNMSSFYLLTQRGSLKRVSIDEIPATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +  L ++  
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVVDLFSI-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V+ NDQI+LV S+KGT+ +  + ++ ++ R + G  I  T  DE V
Sbjct: 765 VDGNDQILLVQSNKGTIYQSRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 20/219 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFIQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTTFGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VV 657

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +   D+ + +
Sbjct: 658 LISQNGYALRFNIEEVPVVGAKAAGVKAINLKADDALQA 696


>gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
 gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
          Length = 817

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 287/753 (38%), Positives = 417/753 (55%), Gaps = 50/753 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+ +A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YA+GRG+  IR    I+  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YASGRGTFKIRATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVK 304

Query: 301 DESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR+   R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDREHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A+  L++
Sbjct: 365 VYLDHRFDVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIE 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++ +E   
Sbjct: 425 R--------------------------FALSDVQTQYILDTPLRRLTKFDRIELESEKER 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDM 538
           L  EI E   IL S + L  ++  EL +V  +  T RRT ++E           +  +  
Sbjct: 459 LNAEIAELTRILDSDAELRKLVSAELAAVSKKFGTDRRTVLLESSGAPAAVPLQVADDPC 518

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G + R   +   A    GKGR        D +      +    V   +S G +
Sbjct: 519 RVLLSSTGLLARTADANPFA--DDGKGRRVK----HDLIVSAVPATARGEVGVVTSAGRL 572

Query: 599 YKEKVWRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +  V  LP      G+P  + G  L   +SL+  E +  +    E     ++  +   T
Sbjct: 573 LRVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDADETVVCLTTLDE-----SSPGLALGT 627

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPIS 711
           + G V+R         N+     + L   D I+   E  T E D++  T   Q +R+  S
Sbjct: 628 EQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGAAELRTGEEDLVFITDDAQLLRYQAS 685

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            +R   GR + GV GI L +G +VIS   V  A
Sbjct: 686 QVRP-QGRPAGGVAGIKLTQGAKVISFTAVDPA 717



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 89/274 (32%), Gaps = 35/274 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++    +  G+        D I+S    T   ++ + T  G
Sbjct: 515 DDPCRVLLSSTGLLARTADANPFADDGKGRRVKH----DLIVSAVPATARGEVGVVTSAG 570

Query: 704 QCVRFPISAIRVFAGRNSVGVRG--------ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +     +               +SL   + V+ +  +  +           
Sbjct: 571 RLLRVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDADETVVCLTTLDESSPGLALGTEQG 630

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT  + D  V          EL+  E+ ++ +++     R  
Sbjct: 631 VVKRVVPDYPSNKEELEVITLKEGDRIV-------GAAELRTGEEDLVFITDDAQLLRYQ 683

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG-----------TL 862
           +   R   R   G+    +++  +   +++   V+     ++ +  G           T 
Sbjct: 684 ASQVRPQGRPAGGVAGIKLTQGAK---VISFTAVDPAADAVVFTVAGSRGTLDDSVQTTA 740

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              P ++     RAT GV      K E  +S   
Sbjct: 741 KATPFDQYPRKGRATGGVRCQRFLKGEDCLSFAW 774



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 18/192 (9%)

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R +         KG +V    IV    A     +  +       R+   D  ++      
Sbjct: 530 RTADANPFADDGKGRRVKHDLIVSAVPATARGEVGVVTSAGRLLRVNVVDLPQLPEQTGT 589

Query: 779 SSVEGNISEERCQELKLKEQFILTVS------------EKGFGKRTSSYDFRISNRSGKG 826
            ++ G         L   E  +   +            E+G  KR    D+     + + 
Sbjct: 590 PNLSGGAPLAEFVSLDADETVVCLTTLDESSPGLALGTEQGVVKRV-VPDYPS---NKEE 645

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           +    + + + I  + A       + ++ ++D   L+R   +++R   R   GV      
Sbjct: 646 LEVITLKEGDRI--VGAAELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLT 703

Query: 887 KDERVVSVERIR 898
           +  +V+S   + 
Sbjct: 704 QGAKVISFTAVD 715


>gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 456/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 826

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/885 (31%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+                               
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYL------------------------------- 710

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V++   +G   +   
Sbjct: 711 --LTQRGSLKRVSIEEILSTSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 455/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
 gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
          Length = 823

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 289/886 (32%), Positives = 461/886 (52%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   ++ LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     ++  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +  TPR + + +     +++    I  E+  V+V+  GY+KR 
Sbjct: 456 ERTLYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTVSLIAEEETYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +    +  T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----REDDRLIFTQVAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I         +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVV---DQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL +K G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDDSDQIVAVAPIKLDD-VLLISKNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D+ I +A + +  + Y                  G  + +++ +  ++      
Sbjct: 686 MNLKADDE-IQVAFICNTSSFYLLTQ-------------RGSLKRVSTEEIPATSRAKRG 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                               VS+   IG L +   
Sbjct: 732 LQVLRELKNKPHRVFLAG--------------------------TVSEQGFIGDLFST-E 764

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V D DQ ++V S+KG +    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VEDGDQTLVVQSNKGIIYETILQDLNLSERTSNGSFISETISDEEV 810


>gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
 gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
          Length = 825

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 287/885 (32%), Positives = 459/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELRDVKRQFATPRLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +  V T   +L F++LG V    V  L     
Sbjct: 516 SPRSFSASTLEEIGK-----RDDDRLLFIQSVKTTQHLLIFTTLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +  +      +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEVLYVEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL +K G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDSDQIVAVAPIKLDD-VLLISKNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D++ +  I                  S       G  + +++ +  ++      
Sbjct: 686 MNLKADDELQAAFI--------------CNTSSFYLLTQRGSLKRVSTEEIPATSRAKRG 731

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                               VS+   IG L +   
Sbjct: 732 LQVLRELKSKPHRVFLAGA--------------------------VSEQGFIGDLFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +    +++ S+ GT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EDGEQTLVIQSNNGTIYEAILQDLNLSERTSNGSFISDTISDEEV 810



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 79/229 (34%), Gaps = 27/229 (11%)

Query: 678 LDSRDEIL---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           L+   E++   +     +E+  +  TK G   R    +              I     D+
Sbjct: 482 LEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFSASTLEE------IGKRDDDR 535

Query: 735 VISMAIVLHAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++ +  V             +   R  +       + +    ++ IT+ + +  V     
Sbjct: 536 LLFIQSVKTTQHLLIFTTLGNVIYRPVHELADIRWKDIGEHLSQTITNFETNEEVLYVEV 595

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAV 844
            ++  +           +  G  KR    +F    + R  K ++   +   ++   +VAV
Sbjct: 596 VDQFDDATT----YFAATRLGQIKRVERKEFSPWRTYR-SKSVKYAKLK--DDSDQIVAV 648

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + +
Sbjct: 649 APIKLDD-VLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLKADDELQA 696


>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
 gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
          Length = 819

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/891 (31%), Positives = 454/891 (50%), Gaps = 92/891 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIKVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKY----------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 413 --------------NKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R+ L   I +EL +VK E   PRRT+I E     +++++  +  E + V +S  GY+KR
Sbjct: 459 DRATLEKEIIKELNAVKKEFANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST T++  F++ G V    V  L    
Sbjct: 519 SSLRSYQSTNDDDNG-----LPDGDKVVYKNTLSTLTNLYLFTNKGNVIYRPVHELIETK 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F +  +  N    + AT  G +++ +L++      
Sbjct: 574 WKETGQHLSQEIGLDSDEQIIRVFVFDKLNTDCN---FILATNDGYIKQLELANLQPTRT 630

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D  ++ V+    +N   I L T     +R+ +S I   +G  +VGV
Sbjct: 631 YKSRAMTAIKLKGKDSYVVGVDLIKSDNHKEITLFTHRAYAIRYDVSEI-PTSGAKAVGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D +++  +V     D                                     
Sbjct: 690 KSANLKDDDYIVNYVLVDSKYVDL------------------------------------ 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  ++++G  K+         +R+ +G+      K N+   +VA+
Sbjct: 714 -------------MHVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK-NKPHRIVAL 759

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            P   +  + + +     + +   +  +  R + G  +  T  D   VS+E
Sbjct: 760 MPYAQDHLLHVTTSSDRHVNIKTTDYPLGDRYSNGSFVIDTTVDGTPVSIE 810


>gi|73916844|gb|AAZ93290.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/883 (32%), Positives = 455/883 (51%), Gaps = 83/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 241 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++
Sbjct: 301 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                  
Sbjct: 361 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL------------------ 402

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+    
Sbjct: 403 --------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR   
Sbjct: 455 TMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    +  L     + 
Sbjct: 515 RSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKD 569

Query: 614 RGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN--- 669
            G+ L   + +    E I  +      +   +      AT+ G ++R +  +F       
Sbjct: 570 IGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTYR 626

Query: 670 -RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++
Sbjct: 627 SKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMN 684

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D       VL +    +    Y+       + +S +    TS              
Sbjct: 685 LKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS-------------- 723

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                KR       + N+  +   A  V++   +G   +     
Sbjct: 724 -------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDV 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 807



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 427 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 486

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 487 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 540

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 541 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 600

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 601 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 652

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 653 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 693


>gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
          Length = 826

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA]
 gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031]
 gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA]
 gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031]
          Length = 826

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y++ +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228]
          Length = 794

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 306/888 (34%), Positives = 492/888 (55%), Gaps = 102/888 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRILF   ++G+  +K + 
Sbjct: 2   KEEIYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAHK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEV+GK+HPHG++A+YDA+ RMAQD++ R  LI+GQGNFGS+DGD  AA RYTE
Sbjct: 62  KSARLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + A  LL ++ + TV+F  N+DGS QEP VL ++ PN+LVNG  GIAVGM+T+IP 
Sbjct: 122 TKLTEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           HNLGEV+D  V ++D P+  L+ +++  + GPDFPTGA I+G  GIK AY +G+G I +R
Sbjct: 182 HNLGEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASIIGNDGIKAAYQSGKGKITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE      + +++TEIPYQVNK+ ++E+IAELV + +I  ++DLRDESD++G R+V
Sbjct: 242 AKSKIE-KKKRHKNLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIRIV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK  A  ++ LN+LY+YT+LQ+ F +N++A+N  KP    L+ IL  F+ FR+E++  
Sbjct: 301 IELKANADPELTLNRLYKYTNLQNNFRINLLAINDKKPVVMGLLEILNHFLDFRKEIIKN 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            +KY L KA +R H+L GL  A+  LD V+ +IR S   +                    
Sbjct: 361 HSKYNLTKAENRYHILEGLKKAIDQLDIVIDVIRNSEAKKE------------------- 401

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                          + +SE Q ++ILE++L RL G+  + +  E   L  +IK   +IL
Sbjct: 402 -------AKAKLVKKLKISERQAQSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ++   L  +++ EL  +K +   PRRT I+  +   ++   D I  +  ++++S+ G +K
Sbjct: 455 NNEEELKSVLRAELKEIKKKFSDPRRTDIIADDSKAEITKNDLIKEKKAIISLSYRGIIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+           +     D++      S+   +LFFS+ G VY  +V  +   
Sbjct: 515 RN--DEYK----------NLRTAKNDYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEH 562

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A G+ L   L +   E I  +    ++++   N Y  F T++G ++R ++ ++ + N
Sbjct: 563 HGLATGENLSKYLQIPINESIIDLNILSKNKAKTKNKYYTFVTENGLIKRTEVDEY-RTN 621

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            S   A+KLD  D++++VE   + +D+++ +K G  +RF  S+     GRN++G R I+L
Sbjct: 622 YSHIRAIKLDE-DQLVNVEKTDEASDLIVISKKGYLIRFKGSSFST-TGRNTLGSRAINL 679

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+                                    ++ +N+S +       R
Sbjct: 680 IKNDKVL----------------------------------YFSTFENNSFIISISENGR 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             ++KL E                   F    R+GKG R       N+   L        
Sbjct: 706 ANKIKLSE-------------------FETQKRNGKGNRIFS----NKSYKLAGAVKAKA 742

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D+I++ +  G +  + V++I   S A     I      E++ +V++I
Sbjct: 743 GDKILIAAKNGEIYEIEVDQIPETSPAGNMYQITKELDFEKITTVKKI 790


>gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 660

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 292/745 (39%), Positives = 437/745 (58%), Gaps = 87/745 (11%)

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP HNLGE+++  + +I
Sbjct: 1   DKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLI 60

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           D P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR   HIE T   +E I
Sbjct: 61  DTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKHHIE-TKAKKEII 119

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVVIELK+ A ++++LN 
Sbjct: 120 VIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAMSEIVLNN 179

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++RRT + L KA+ RAH+
Sbjct: 180 LYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHI 239

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           L GL IAV N+DEVVRIIR S N   A+  L  R                          
Sbjct: 240 LEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR-------------------------- 273

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL S  +L  II++EL 
Sbjct: 274 FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELT 333

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            +K++    R+T I +   +++ ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+
Sbjct: 334 EIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGK 393

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
             V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS  A+GKA++N+++L  
Sbjct: 394 VAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRP 453

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I  I+P P+ + S +   +VF T++G ++R  L++F  I  +G  A+ LD  DEI++
Sbjct: 454 DEKIMEIIPTPDFDESKS---LVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 510

Query: 687 VETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHA 744
            +    E   I++ T LGQC+RF +   R   GR++ GVRGI      D V+   ++   
Sbjct: 511 AKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFKIDTDFVVDADVISSE 569

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D +                                                    ILTVS
Sbjct: 570 DQE----------------------------------------------------ILTVS 577

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           EKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D   ++L++  G +IR
Sbjct: 578 EKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDDTQDLMLLTSIGKMIR 635

Query: 865 VPVNEIRIASRATKGVVIFSTAKDE 889
           V +N IR A R T GV+I +   ++
Sbjct: 636 VDMNTIRKAGRNTSGVIIVNVDSND 660



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 90/267 (33%), Gaps = 61/267 (22%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 361 PNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 420

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  M I+   D D  + + +   
Sbjct: 421 NMGQLYWLKVYKI-PEGSRIAKGKAVVNLINLRPDEKI--MEIIPTPDFDESKSLVF--- 474

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                         +  G  KRTS  +F
Sbjct: 475 ---------------------------------------------FTRNGIIKRTSLNEF 489

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             SN    G+RA  +   +EI  + A     +   I++ +  G  IR  + + R   R+T
Sbjct: 490 --SNIRSNGVRAIVLDDADEI--VTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRST 545

Query: 878 KGVVIFSTA-KDERVVSVERIRESEIV 903
           +GV         + VV  + I   +  
Sbjct: 546 RGVRGIKFKIDTDFVVDADVISSEDQE 572


>gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 823

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 686 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 604 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 656 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585]
 gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585]
 gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 826

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|73916900|gb|AAZ93318.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 452/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
 gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
          Length = 826

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
 gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
          Length = 815

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 287/836 (34%), Positives = 443/836 (52%), Gaps = 53/836 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + I  +++ + M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   SEGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW +R  L+E  GN GS+DGDP AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD  + ++ +P   L+ LM  ++GPDFPTG +I G+ GI  AY TGRG IV+
Sbjct: 182 PPHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G++ QI VTEIPY+VNKA +++KI E+   K++  +A++RDE+DR G R+
Sbjct: 242 RSKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELKR A A  +LN L++ T LQ  ++ NMVA+N  +PE   L  IL A++  +  V+ 
Sbjct: 302 AIELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y L KA DR H++VGL  A++ LD+V++ IR S +   AR  L++           
Sbjct: 362 KRTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT      +  E   L  EI++   I
Sbjct: 411 ---------------AYDFSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+    L  +++QEL +V  +   PRRT I   + D++ +    +  ED+VV VSH GY+
Sbjct: 456 LAEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A      G     ++D D+   +  +ST   ++ F+S G +    V  +  
Sbjct: 516 KRSGVRSYTASDPTDNG-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ- 667
              +  G+ +   + L   E I     F   +        + AT  G +++   +D    
Sbjct: 571 VKWKETGEHISQTIGLAADEEIVATFAFKTLKEPGR---FLIATSDGYIKQTAFADLTPG 627

Query: 668 ---INRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               +R+        +   +++V+  T+  E  ILL +K G  +R+P+  + V   R + 
Sbjct: 628 RTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGAR-TT 686

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR + L   D+V+++A+V       +E I  +    A +RL   +    +  +    V 
Sbjct: 687 GVRSMDLRDDDEVVNLALVTD-----NETIALITQRGAFKRLAMKELSVTSRARRGVIVL 741

Query: 783 GNISEERCQ-----ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             +  +  +      +      +  ++ +         D  +S R   G    D  
Sbjct: 742 RELKRDPHRIVDFMTIPAGNPPLEIMTSRERTHDVMPTDHPLSGRYSNGSFVIDTD 797



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            D+    R+           +I +  T   E+ ++L +  G   R  + +    +     
Sbjct: 475 KDYRNPRRTEIQNEI--EDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTA-SDPTDN 531

Query: 723 GVRGISLAKGDQVISM---AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G     L  GD  I M   + + H      +     + +     +   +T E  S     
Sbjct: 532 G-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGL 586

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + +  I      +   +    L  +  G+ K+T+  D     R+ K   A          
Sbjct: 587 AADEEIVATFAFKTLKEPGRFLIATSDGYIKQTAFADLTP-GRTYKSRAAVYEKLKTAEA 645

Query: 840 ALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +VAV  + +  +  I+L+S  G  +R PV+E+ +    T GV       D+ VV++  +
Sbjct: 646 RVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLALV 705

Query: 898 RESEIV 903
            ++E +
Sbjct: 706 TDNETI 711



 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 18/265 (6%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +   VV  +  G ++R   S       S      L   D  + ++  +  N +++ T  G
Sbjct: 502 DEDVVVLVSHDGYLKR---SGVRSYTASDPTDNGLKDGDYPIFMQKLSTLNHLMMFTSKG 558

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             +  P+  I         G    + I LA  +++++         +    +        
Sbjct: 559 NLIYRPVHEI-SDVKWKETGEHISQTIGLAADEEIVA-TFAFKTLKEPGRFLIATSDGYI 616

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQE-----LKLKEQFILTVSEKGFGKRTSSY 815
           ++   +  T   T     +  E   + E          +  EQ IL +S+ G+  R    
Sbjct: 617 KQTAFADLTPGRTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVD 676

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +  ++     G+R+ D+   +E   +V +  V DN+ I L++ +G   R+ + E+ + SR
Sbjct: 677 EVSVNGARTTGVRSMDLRDDDE---VVNLALVTDNETIALITQRGAFKRLAMKELSVTSR 733

Query: 876 ATKGVVIFSTAKDE--RVVSVERIR 898
           A +GV++    K +  R+V    I 
Sbjct: 734 ARRGVIVLRELKRDPHRIVDFMTIP 758


>gi|73916858|gb|AAZ93297.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916860|gb|AAZ93298.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916862|gb|AAZ93299.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916864|gb|AAZ93300.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 846

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 296/908 (32%), Positives = 464/908 (51%), Gaps = 116/908 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT  ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 20  EITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 80  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 139

Query: 135 LQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 140 LSPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDNP++  + L +II GPDFPTG  I+   GI++AY  G+G I +RGV
Sbjct: 200 NLGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIPTQGIEDAYRHGKGIISVRGV 259

Query: 254 SHIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IE+    +++      I+VTE+PYQV K+  +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 260 VRIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRSG 319

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE 
Sbjct: 320 MRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREH 379

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  Y L + R+R H+L GL IA+ NLD ++ I+R + +  TA+ +  Q        
Sbjct: 380 TLTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQE------- 432

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + LSE Q   IL + + RLTGL R  ++ E + L   I E 
Sbjct: 433 -------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELQGRINEL 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-------EGLLDMEDEDCIVREDMVV 540
            ++L++R   L ++K+EL S+K +    RRTRIV       +       +     ++   
Sbjct: 474 ENLLNNRPEFLKVLKKELRSLKRKYGDERRTRIVQPTAQKSQSKATQTAKKQSSDQNKTT 533

Query: 541 TVSHLG-YVKRVPLSVYRAQRRGGKGRSGVVMR-------------DEDFVTDLFIVSTH 586
           ++S+        P S++  Q         +  +             D         +   
Sbjct: 534 SISNREPDTTSQPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVPIYSEPIQER 593

Query: 587 TSVLFFSSLGFVYKEKVWRLP--IGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
              +  + +G  Y   V  +P     P      L+++L  +       ++       +  
Sbjct: 594 EQFIVITDIGKAYPVNVADVPPIEIQP----IPLLSLLPKSAQRDSKKVVSLFFLSDNTE 649

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           N  ++  T  G ++R +LS+   +   G + +KL  +D + SV    +  ++ +    G+
Sbjct: 650 NKDLLLLTNQGKIKRIQLSELAGLTNRGLVLIKLKDQDGLESVSITKEGEEVAIAMSSGR 709

Query: 705 CVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +RFP +  +    GRN+ G + + L  G+ +I    +                      
Sbjct: 710 VLRFPVVDEVIPIMGRNAQGNQALKLRYGETIIGCVTLDD-------------------- 749

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                             + +L VS+ G+GKR +    R++   
Sbjct: 750 ---------------------------------NKIVLLVSKLGYGKRLNVTGLRMTKLG 776

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G +A   +  N+  +L+ +   +D+  I L++++   + +   +++I  +  +G  + 
Sbjct: 777 DIGTQALQFTHKND--SLLGMIRASDSKDITLLTNQKKTLNIVAKDVKIWGKDGQGDRLV 834

Query: 884 STAKDERV 891
             +  E +
Sbjct: 835 KLSNQEVI 842



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            + + +L ++ +G  KR    +   ++NR    +    +   +    L +V    + +++
Sbjct: 648 TENKDLLLLTNQGKIKRIQLSELAGLTNRG---LVLIKLKDQD---GLESVSITKEGEEV 701

Query: 854 ILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +    G ++R PV +  I I  R  +G         E ++    + +++IV
Sbjct: 702 AIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALKLRYGETIIGCVTLDDNKIV 753


>gi|319939076|ref|ZP_08013440.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812126|gb|EFW08392.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 818

 Score =  561 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 295/888 (33%), Positives = 470/888 (52%), Gaps = 83/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIVVTEIPY +NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYDINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G+     RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNSSTVDEVGK-----RDDDRLVFVSSAKTTQHLLIFTNLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E   +++       TK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTITNFETNEEVL----YAELVDNFDEGTYFALTKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+I+++     ++ ++L T+ G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSVKFAKLKNEDDQIITLSPIKLDD-VMLVTQNGYALRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    A +R+   D           +   N  
Sbjct: 685 INLKKND-VLAAAFIANTDSLY-----ILTQRGALKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG++ +  D   S+                        P
Sbjct: 731 LQVLRELKSKPHRVFQAG-PVFGEQPAELDLFSSD-----------------------HP 766

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             + +QI+ +VS+KGT  +V + ++ ++ R + G  I  T  DE V S
Sbjct: 767 TAEEEQILSIVSNKGTTYQVNLADLGLSERTSNGSFISDTISDEEVFS 814



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 82/227 (36%), Gaps = 22/227 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA--- 739
           EI +     +E   +  T+ G   R         +  +S  V  +     D+++ ++   
Sbjct: 490 EIDTASLIVEEETFVSVTRGGYLKRTS-----PRSFNSST-VDEVGKRDDDRLVFVSSAK 543

Query: 740 -----IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+ + +  V      +   E  
Sbjct: 544 TTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVLYAELVDNFDE-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   +++ G  KR    +F    R+ K          NE   ++ + P+  +D ++
Sbjct: 602 ---GTYFALTKLGQIKRVERKEFSPW-RTYKSKSVKFAKLKNEDDQIITLSPIKLDD-VM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           LV+  G  +R  + E+ +      GV   +  K++ V++   I  ++
Sbjct: 657 LVTQNGYALRFNIEEVPVVGAKAAGVKAINLKKND-VLAAAFIANTD 702


>gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
 gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
          Length = 834

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 308/841 (36%), Positives = 482/841 (57%), Gaps = 40/841 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +       I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+ 
Sbjct: 13  ENQNHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGIT 72

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K + K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  A
Sbjct: 73  SDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAA 132

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K +++L+ D+  DTV F  NYD S  EP  L    PN+LVNG  GIAVGM
Sbjct: 133 AMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGM 192

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGR 245
           AT+IP HNL EVV    A IDN DI +D +++  I GPDFPTGA++   T ++  Y TGR
Sbjct: 193 ATSIPPHNLKEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTKMREGYKTGR 252

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS++IR     E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ 
Sbjct: 253 GSVIIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNY 311

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R++IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+
Sbjct: 312 EGIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQ 371

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+++R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   + A+ +L  +     
Sbjct: 372 VNVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTNK----- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                    E Q +AIL++RL RL GL RD I  E+ ++   + 
Sbjct: 427 ---------------------YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLT 465

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSH 544
               +++++     ++K +L  + D+    RRT  I E L+++EDE+ I     ++ +S 
Sbjct: 466 YLDLLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQ 525

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY++R+    +R Q+RGG+G   V +   D +    +      VLFF++ G VY+ K++
Sbjct: 526 EGYIRRINPDEFRIQKRGGRGV-SVNVEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLY 584

Query: 605 RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +   S  ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S
Sbjct: 585 NIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKIS 642

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F  INR+GK A+ L   D+++SV   T ++ I +  + G+ +R   S +   + R   G
Sbjct: 643 EFENINRNGKKAINLRENDQLISVFATTGQDTIFIANESGKVIRIKESVVNPQS-RVGSG 701

Query: 724 VRGISLAKGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VR + L   D V+    +  L        +  + K      R+   + + I  +  +   
Sbjct: 702 VRALKLEANDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRT 761

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
               +    +E  L    IL +S  G   +T   +    +R+  G++A  ++   EI A+
Sbjct: 762 GKFKAIIDARETDL----ILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAI 817

Query: 842 V 842
            
Sbjct: 818 T 818


>gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/885 (31%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V    + + ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPI-KLDYVVLVSQNGYALRFNIEKVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 686 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  VS+   +G   +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPQRVFLAGAVSEQGFVGDFFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+   D 
Sbjct: 604 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKL-DY 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + ++ +      GV   +  +D+ + S
Sbjct: 656 VVLVSQNGYALRFNIEKVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
          Length = 819

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/891 (31%), Positives = 454/891 (50%), Gaps = 92/891 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKY----------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 413 --------------NKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R+ L   I +EL +VK E   PRRT+I E     +++++  +  E + V +S  GY+KR
Sbjct: 459 DRATLEKEIIKELNAVKKEFANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST T++  F++ G V    V  L    
Sbjct: 519 SSLRSYQSTNDDDNG-----LPDGDKVVYENTLSTLTNLYLFTNKGNVIYRPVHELIETK 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F +  +  N    + AT  G +++ +L++      
Sbjct: 574 WKETGQHLSQEIGLDSDEQIIRVFVFDKLNTDCN---FILATNDGYIKQLELANLQPTRT 630

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D  ++ V+    +N   I L T     +R+ +S I   +G  +VGV
Sbjct: 631 YKSRAMTAIKLKGKDSYVVGVDLIKSDNHKEITLFTHRAYAIRYDVSEI-PTSGAKAVGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D +++  +V     D                                     
Sbjct: 690 KSANLKDDDYIVNYVLVDSKYVDL------------------------------------ 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  ++++G  K+         +R+ +G+      K N+   +VA+
Sbjct: 714 -------------MHVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK-NKPHRIVAL 759

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            P   +  + + +     + +   +  +  R + G  +  T  D   VS+E
Sbjct: 760 MPYAQDHLLHVTTSSDRHVNIKTTDYPLGDRYSNGSFVIDTTVDGTPVSIE 810


>gi|288905179|ref|YP_003430401.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
 gi|288731905|emb|CBI13470.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
          Length = 819

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 295/894 (32%), Positives = 461/894 (51%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  ++ +L +++A R+E++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIVPMLTSYIAHRKEIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + E    + +     ATK G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFATDEYIL----YAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   ++ D ++++     ++ +++ T  G  + F I  + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V S A V + D+                    G  + + +    ++   N  
Sbjct: 685 INLKDNDFVAS-AFVANTDS-------------FFILTQRGSLKRMATELIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                       G    + DV  ++    L  +  
Sbjct: 731 LQVLRELKSKPHRVFMA--------------------GPVHASNDVQNLD----LFTIST 766

Query: 847 VNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V+ +D   + + S+KG + +  + ++ ++ R + G  I     DE V S  RI+
Sbjct: 767 VDSDDVETLEVHSNKGAVYQAILEDLNLSERTSNGSFISDKISDEGVFS-ARIK 819


>gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|314933533|ref|ZP_07840898.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
 gi|313653683|gb|EFS17440.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
          Length = 800

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 464/883 (52%), Gaps = 92/883 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQGIDGIKKAYESGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + +E   L   IKE  +IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEDEHAELEALIKELRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++VSH GY+KR   
Sbjct: 459 ALLSVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E++  +     ++   NN + V ATK+G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIDEDEQVVDVY---NEKDFNNNAFYVMATKNGMIKKSSVPQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + MK+   DEI++V     +  + + T  G  + +    +     R + G++ I+L   
Sbjct: 631 LVGMKVKDHDEIVNVIRLESDQLVTVLTHKGMSLTYSTDELSDTGLR-AAGIKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DHVVMTESVSDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL ++++G  KR S    +++ R+ +GI      K N    +V    V +  Q
Sbjct: 704 -------ILMITQRGAIKRISYKVLQVAKRAQRGITLLKELKKNPH-RIVDAAVVKEGQQ 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              +          +NE+ ++ + T G  I       +VVS+ 
Sbjct: 756 TYTIFSNSNEESGNINEVHLSEQYTNGSFIIDVEDFGQVVSMT 798



 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 113/278 (40%), Gaps = 15/278 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  + HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKY 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           +    ++ +L+ T  G+ +  P+  +        +G    + + + + +QV+   +    
Sbjct: 541 QEVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHVSQIVPIDEDEQVV--DVYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D + +            ++      +     K    ++    +E    ++L+   ++TV 
Sbjct: 598 DFNNNAFYVMATKNGMIKKSSVPQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQLVTVL 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     GI++ ++   +    +V    V+D+D I++++ +G + 
Sbjct: 658 THKGMSLTYSTDELSDTGLRAAGIKSINLKDED---HVVMTESVSDSDSILMITQRGAIK 714

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRE 899
           R+    +++A RA +G+ +    K    R+V    ++E
Sbjct: 715 RISYKVLQVAKRAQRGITLLKELKKNPHRIVDAAVVKE 752



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  +  G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSVSHHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKYQEVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  + +   ++      F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVDVYNEKDFNNNAFYVMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S   F+ + R  K +    V   +E   +V V  +  +  + +++ KG  + 
Sbjct: 610 KNGMIKKSSVPQFKTT-RFNKPLVGMKVKDHDE---IVNVIRLESDQLVTVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +E+        G+   +   ++ VV  E + +S+ +
Sbjct: 666 YSTDELSDTGLRAAGIKSINLKDEDHVVMTESVSDSDSI 704


>gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 455/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHGN++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916820|gb|AAZ93278.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 454/883 (51%), Gaps = 83/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 241 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++
Sbjct: 301 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                  
Sbjct: 361 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL------------------ 402

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+    
Sbjct: 403 --------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR   
Sbjct: 455 TMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+     RD+D +  +    T   +L F+SLG V    +  L     + 
Sbjct: 515 RSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKD 569

Query: 614 RGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN--- 669
            G+ L   + +    E I  +      +   +       T+ G ++R +  +F       
Sbjct: 570 IGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 626

Query: 670 -RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++
Sbjct: 627 SKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMN 684

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D       VL +    +    Y+       + +S +    TS              
Sbjct: 685 LKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS-------------- 723

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                KR       + N+  +   A  V++   +G   +     
Sbjct: 724 -------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDV 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 807



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 427 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 486

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 487 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 540

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 541 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 600

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 601 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 652

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 653 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 693


>gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
          Length = 817

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 279/754 (37%), Positives = 410/754 (54%), Gaps = 52/754 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+ +A   + + + +DTVDF PNYDG  +EPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVV     +I  P+ DLDALM+ + GPD PTG  I+G +G+++A
Sbjct: 185 GIAVGMATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGVRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  IR    +E+ +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YRTGRGTFKIRATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVK 304

Query: 301 DESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR+   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFDVVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++  E + 
Sbjct: 425 R--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELETERDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  EI+E   IL S + L  ++  EL +V  +    RRT ++E            +    
Sbjct: 459 LNAEIEELTRILDSDAELRKLVSGELAAVAKKFGNDRRTLLLESADVPAAPVPLQVEDAP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       AQ    + +        D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTANDEPFAQDAAKRVK-------HDVIVSAVPTTARGEVGVVTSAGR 571

Query: 598 VYKEKVWR---LPIGSPQ---ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P    + G  L   +SL   E +  +    E     ++  +   
Sbjct: 572 LLRLNVVDLPVLPEAMPTPNLSGGAPLAEFVSLEDDEEVVCLTTLDE-----SSPGLALG 626

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         N+     + L   D I+   E  T E D++  T   Q +R+  
Sbjct: 627 TEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGAIELRTGEEDLVFVTDDAQLLRYQA 684

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             +R   GR + GV G+ LA+G +VI+   V  A
Sbjct: 685 GQVRP-QGRPAGGVAGVKLAQGAKVIAFTAVDPA 717



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 90/276 (32%), Gaps = 36/276 (13%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +    V  +  G + R    +    +     A K    D I+S    T   ++ + T  
Sbjct: 515 EDAPCRVLLSSTGLLARTANDEPFAQD-----AAKRVKHDVIVSAVPTTARGEVGVVTSA 569

Query: 703 GQCVRFPISA----IRVFAGRNSVGVRG----ISLAKGDQVISMAIVLHADADY--DERI 752
           G+ +R  +             N  G       +SL   ++V+ +  +  +          
Sbjct: 570 GRLLRLNVVDLPVLPEAMPTPNLSGGAPLAEFVSLEDDEEVVCLTTLDESSPGLALGTEQ 629

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +K +         + E IT  + D  V          EL+  E+ ++ V++     R 
Sbjct: 630 GVVKRVVPDYPSNKEELEVITLKEGDRIVGAI-------ELRTGEEDLVFVTDDAQLLRY 682

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG-----------T 861
            +   R   R   G+    +++  +   ++A   V+     ++ +  G           T
Sbjct: 683 QAGQVRPQGRPAGGVAGVKLAQGAK---VIAFTAVDPAADAMVFTVAGSRGTLDDSVQTT 739

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               P ++     RAT GV      K E  +++  +
Sbjct: 740 AKLTPFDQFPRKGRATGGVRCQRFLKGEDCLALAWV 775



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 26/188 (13%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SV 781
            L K D++         +A+ +E    +   +  R+L+SG+   +     +         
Sbjct: 443 RLTKYDRIELETERDRLNAEIEELTRILDSDAELRKLVSGELAAVAKKFGNDRRTLLLES 502

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
               +     +++     +L  S  G   RT++ +              D +K  +   +
Sbjct: 503 ADVPAAPVPLQVEDAPCRVLL-SSTGLLARTANDEPFAQ----------DAAKRVKHDVI 551

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA------TKGVVI---FSTAKDERVV 892
           V+  P     ++ +V+  G L+R+ V ++ +   A      + G  +    S   DE VV
Sbjct: 552 VSAVPTTARGEVGVVTSAGRLLRLNVVDLPVLPEAMPTPNLSGGAPLAEFVSLEDDEEVV 611

Query: 893 SVERIRES 900
            +  + ES
Sbjct: 612 CLTTLDES 619


>gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis]
          Length = 815

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 286/836 (34%), Positives = 443/836 (52%), Gaps = 53/836 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + I  +++ + M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   SEGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW +R  L+E  GN GS+DGDP AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD  + ++ +P   L+ LM  ++GPDFPTG +I G+ GI  AY TGRG IV+
Sbjct: 182 PPHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G++ QI VTEIPY+VNKA +++KI E+   K++  +A++RDE+DR G R+
Sbjct: 242 RSKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELKR A A  +LN L++ T LQ  ++ NMVA+N  +PE   L  IL A++  +  V+ 
Sbjct: 302 AIELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y L KA DR H++VGL  A++ LD+V++ IR S +   AR  L++           
Sbjct: 362 KRTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT      +  E   L  EI++   I
Sbjct: 411 ---------------AYDFSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+    L  +++QEL +V  +   PRRT I   + D++ +    +  ED+VV VSH GY+
Sbjct: 456 LAEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A      G     ++D D+   +  +ST   ++ F+S G +    V  +  
Sbjct: 516 KRSGVRSYTASDPTDNG-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ- 667
              +  G+ +   + L   E I     F   +        + AT  G +++   +D    
Sbjct: 571 VKWKETGEHISQTIGLAADEEIVATFAFKTLKEPGR---FLIATSDGYIKQTAFADLTPG 627

Query: 668 ---INRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               +R+        +   +++V+  T+  E  ILL +K G  +R+P+  + V   R + 
Sbjct: 628 RTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGAR-TT 686

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR + L   D+V+++A+V       ++ I  +    A +RL   +    +  +    V 
Sbjct: 687 GVRSMDLRDDDEVVNLALVTD-----NKTIALITQRGAFKRLAMKELSVTSRARRGVIVL 741

Query: 783 GNISEERCQ-----ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             +  +  +      +      +  ++ +         D  +S R   G    D  
Sbjct: 742 RELKRDPHRIVDFMTIPAGNPPLEIMTSRERTHDVMPTDHPLSGRYSNGSFVIDTD 797



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 14/243 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            D+    R+           +I +  T   E+ ++L +  G   R  + +    +     
Sbjct: 475 KDYRNPRRTEIQNEI--EDLKIKTTVTVADEDVVVLVSHDGYLKRSGVRSYTA-SDPTDN 531

Query: 723 GVRGISLAKGDQVISM---AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G     L  GD  I M   + + H      +     + +     +   +T E  S     
Sbjct: 532 G-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGL 586

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + +  I      +   +    L  +  G+ K+T+  D     R+ K   A          
Sbjct: 587 AADEEIVATFAFKTLKEPGRFLIATSDGYIKQTAFADLTP-GRTYKSRAAVYEKLKTAEA 645

Query: 840 ALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +VAV  + +  +  I+L+S  G  +R PV+E+ +    T GV       D+ VV++  +
Sbjct: 646 RVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLALV 705

Query: 898 RES 900
            ++
Sbjct: 706 TDN 708



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 101/265 (38%), Gaps = 18/265 (6%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +   VV  +  G ++R   S       S      L   D  + ++  +  N +++ T  G
Sbjct: 502 DEDVVVLVSHDGYLKR---SGVRSYTASDPTDNGLKDGDYPIFMQKLSTLNHLMMFTSKG 558

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             +  P+  I         G    + I LA  +++++         +    +        
Sbjct: 559 NLIYRPVHEI-SDVKWKETGEHISQTIGLAADEEIVA-TFAFKTLKEPGRFLIATSDGYI 616

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQE-----LKLKEQFILTVSEKGFGKRTSSY 815
           ++   +  T   T     +  E   + E          +  EQ IL +S+ G+  R    
Sbjct: 617 KQTAFADLTPGRTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVD 676

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +  ++     G+R+ D+   +E   +V +  V DN  I L++ +G   R+ + E+ + SR
Sbjct: 677 EVSVNGARTTGVRSMDLRDDDE---VVNLALVTDNKTIALITQRGAFKRLAMKELSVTSR 733

Query: 876 ATKGVVIFSTAKDE--RVVSVERIR 898
           A +GV++    K +  R+V    I 
Sbjct: 734 ARRGVIVLRELKRDPHRIVDFMTIP 758


>gi|306831249|ref|ZP_07464409.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426485|gb|EFM29597.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 819

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 294/894 (32%), Positives = 460/894 (51%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+ ++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKAIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E    + +     ATK G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFATDEYVL----YAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   ++ D ++++     ++ +++ T  G  + F I  + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V S A V + D+                    G  + + +    ++   N  
Sbjct: 685 INLKDDDFVAS-AFVANTDS-------------FFILTQRGSLKRMATELIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                       G    + DV  ++    L  +  
Sbjct: 731 LQVLRELKSKPHRVFMA--------------------GPVHASNDVQNLD----LFTIST 766

Query: 847 VNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V+ +D   + + S+KG + +  + ++ ++ R + G  I     DE V S  RI+
Sbjct: 767 VDSDDVETLEVHSNKGAVYQAILEDLNLSERTSNGSFISDKISDEGVFS-ARIK 819


>gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
 gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
          Length = 818

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 293/888 (32%), Positives = 471/888 (53%), Gaps = 83/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G+     RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNSSTVDEVGK-----RDDDRLIFISSAKTTQHLLIFTNLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E   +++       TK G ++R +   F     
Sbjct: 571 KEIGEHLSQTITNFETNEEVI----YTELVDNFDEGTYFAVTKLGQIKRVERKQFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+I+++     ++ ++L T+ G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSVKFAKLKNEDDQIITLSPIKLDD-VMLVTQNGYALRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A +++ D+ Y      +    A +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIVNTDSFY-----ILTQRGALKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  ++LK K   +       FG++ +  D   S+                        P
Sbjct: 731 LQVLRDLKSKPHRVFQAG-PVFGEQPAELDLFSSD-----------------------NP 766

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             + +QI+ ++S+KGT  +V + ++ ++ R + G  I  T  DE V S
Sbjct: 767 TAEEEQILSIISNKGTTYQVNLADLGLSERTSNGSFISDTISDEEVFS 814



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 21/226 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA--- 739
           EI +     +E   +  T+ G   R         +  +S  V  +     D++I ++   
Sbjct: 490 EIDTASLIVEEETYVSVTRGGYLKRTS-----PRSFNSST-VDEVGKRDDDRLIFISSAK 543

Query: 740 -----IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+ + +  V      +   E  
Sbjct: 544 TTQHLLIFTNLGNVIYRPVHELADIRWKEIGEHLSQTITNFETNEEVIYTELVDNFDE-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   V++ G  KR     F    R+ K          NE   ++ + P+  +D ++
Sbjct: 602 ---GTYFAVTKLGQIKRVERKQFSPW-RTYKSKSVKFAKLKNEDDQIITLSPIKLDD-VM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV+  G  +R  + E+ +      GV   +  KD+ + +   +   
Sbjct: 657 LVTQNGYALRFNIEEVPVVGAKAAGVKAINLKKDDVLAAAFIVNTD 702


>gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 817

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/893 (31%), Positives = 463/893 (51%), Gaps = 100/893 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G   +K 
Sbjct: 3   DNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW LR+ LIE  GN GS+D DPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +L+D+ K+TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  +  I +P+  L+ LME ++GPDFPTG +I G  G+K AY TG+G +V+
Sbjct: 183 PPHNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGGIIQGINGLKQAYRTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E+  G+++QI+V+EIPY+VNKA +++KI E+   K++  IA++RDESDR G  +
Sbjct: 243 RSKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDESDRDGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+   A  ILN L++ T LQ  ++ NMVA+N  +PER  L  I++A+V F++EV+ 
Sbjct: 303 AIELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLRPERMGLKEIIQAYVDFQKEVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTK+ L KA DR H++ GL  A++ LD+V++ IR S + + A++ L+            
Sbjct: 363 KRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLIT----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   SE Q  AI+ L+L RLT     ++++E  +L   I E  +I
Sbjct: 412 ---------------SFDFSERQAEAIVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L++ + L  ++  EL  VK    TPR + I E + +  ++    +  E ++V VS  GY+
Sbjct: 457 LNNPNELSKVLSAELRQVKKRYATPRLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A            +++ DF      ++T   ++  ++ G +    V  +  
Sbjct: 517 KRSSLRSYKASAEED------GLKEGDFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIME 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ- 667
              +  G+ +   + L   E I         +   +    + AT  G ++R  L DF   
Sbjct: 571 TRWKDTGEHISQAIGLADDEIILKAFDVKNFDEPVS---FLIATSDGYIKRTSLKDFKPG 627

Query: 668 --INRSGKIAMKLDSRD-EILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNS 721
               +   + +KL + D ++++V   T +     ILL T+ G  +R+ +  +     R +
Sbjct: 628 RTYRKKAAVYIKLKAADAKVVNVAKLTSQSTKETILLATRNGYGLRYDLIEVPEVGPR-A 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ + L + D++ +  +V   D                                    
Sbjct: 687 AGVKSMDLRE-DEIANFVLVNDHDQ----------------------------------- 710

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++ +G  K+    +  +++R+ +G++     K  E   +
Sbjct: 711 ------------------IGLITNRGSFKKMKVSEISVTSRARRGVQILRELKK-EPHRV 751

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  V   +   + + +G +  +   E  +  R + G  +     +   VS+
Sbjct: 752 ADIEVVEPGEAFEVRTSRGLIHDIIPLEHPLNERYSNGSFLVDVDSEGVPVSM 804



 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 106/287 (36%), Gaps = 20/287 (6%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E I   +      +      +V  ++ G ++R+ L    +  ++      L   D  +  
Sbjct: 488 EHIEE-LVVDRTITVPEEQVMVLVSQSGYLKRSSL----RSYKASAEEDGLKEGDFTVFK 542

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           +     + +++ T  G  +  P+  I +       G    + I LA  + ++    V + 
Sbjct: 543 KELNTLDHLIMLTNKGNLIYRPVHEI-METRWKDTGEHISQAIGLADDEIILKAFDVKNF 601

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKND-----SSVEGNISEERCQELKLKEQF 799
           D      I        +  L           K        + +  +        +  ++ 
Sbjct: 602 DEPVSFLIATSDGYIKRTSLKDFKPGRTYRKKAAVYIKLKAADAKVVNVAKLTSQSTKET 661

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  +  G+G R    +         G+++ D+ +      +     VND+DQI L++++
Sbjct: 662 ILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLREDE----IANFVLVNDHDQIGLITNR 717

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVD 904
           G+  ++ V+EI + SRA +GV I    K E  RV  +E +   E  +
Sbjct: 718 GSFKKMKVSEISVTSRARRGVQILRELKKEPHRVADIEVVEPGEAFE 764


>gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|326803542|ref|YP_004321360.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651545|gb|AEA01728.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 289/892 (32%), Positives = 465/892 (52%), Gaps = 99/892 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +S+ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +  + K 
Sbjct: 4   DIQELSLDEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G V+G YHPHG++++Y+A+ RM+Q W  R+ LI+  GN GS+DGDP AA RYTE R
Sbjct: 64  AKTVGNVIGNYHPHGDSSVYEAMVRMSQAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL DL KDTVD   N+D + +EPVVL A +PN+LVNG  GI+ G AT IPTHN
Sbjct: 124 LSKLADELLKDLNKDTVDTILNFDDTEEEPVVLPAGFPNLLVNGSQGISAGYATEIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D     ID+P   ++ LM+ + GPDFPTG +I G+  +  AY TGRG +V+R  +
Sbjct: 184 LGEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGGIIQGKDQLIKAYKTGRGKVVVRAQT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     R+QIV+TE+P++VNKA ++ K+ EL   + I  + ++RDESDR G R+++EL
Sbjct: 244 EVESLKAGRKQIVITELPFEVNKADLVRKMDELRLNRSIDGVMEVRDESDRSGLRIIVEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A AD IL   +++T+LQ  ++ NMVA+N  +PE+  LI I++A++  R++VV RRT+
Sbjct: 304 KKDADADQILQYYFKHTNLQINYNFNMVAINKQRPEQVGLIAIIQAYIDHRKDVVSRRTQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA+ R H++ GL  A++ LD+V+ IIR S + + A+  L+                
Sbjct: 364 YDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLISE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S+ Q  AI+ L+L RLT      ++ E  SL   I +   ILS  
Sbjct: 410 ------------YQFSQAQAEAIVTLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
           + L+ +I+ EL ++K    T R T+I   + +++ +       E++V  V+  GY+KR  
Sbjct: 458 TILMKLIQSELKAIKKAYATDRLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y++      G     +RD D V  L   ST  +++  ++ G    + V+ +     +
Sbjct: 518 LRSYQSSNFADLG-----LRDGDHVLYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWK 572

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN--- 669
             G+ L   + +   E+I  + P+ +D        +V AT+ G ++++KLS+  +I    
Sbjct: 573 DLGEHLSQRIPIASDEKIIQVYPYAKDSQD----TIVLATREGMIKQSKLSELKKIRGHK 628

Query: 670 -RSGKIAMKLDSRDEILSVETCTQEND-----ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            ++ +I       DE+++      ++D     ++L T LG  +R+ IS I     R + G
Sbjct: 629 NKASQIMPLSSPLDEVVNCYLVNNQSDKQNGEVILFTALGFSLRYQISEINTVGLR-AKG 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V  I+L   DQV++                                              
Sbjct: 688 VISINLKDQDQVVNFV-------------------------------------------- 703

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                  Q+   ++Q IL  +++G+ KR    D +   R+ +G+      K ++   LV 
Sbjct: 704 ------YQDQVDEDQQILLATQRGYMKRMRWRDIQTMTRAKRGLMVLREVK-SKPHRLVQ 756

Query: 844 VFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              V    ++  L +  G L ++   ++ +  R + G  I    +   ++ V
Sbjct: 757 ALEVESTQEVYELYTSNGELSQIKAVDVPLHERYSNGSQIIDEGRLGELLDV 808



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 180/557 (32%), Gaps = 73/557 (13%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            NL EV+  + +  +   A+ E + +     D      +                  V+ 
Sbjct: 182 HNLGEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGGIIQGKDQLIKAYKTGRGKVVVRA 241

Query: 455 RAILELRLARLTGLGRDDIRNE--LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           +  +E   A    +   ++  E     L  ++ E         RL   I   ++ V+DE 
Sbjct: 242 QTEVESLKAGRKQIVITELPFEVNKADLVRKMDEL--------RLNRSI-DGVMEVRDES 292

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D      IVE   D + +  +         ++L       +     QR    G   ++  
Sbjct: 293 DRSGLRIIVELKKDADADQIL---QYYFKHTNLQINYNFNMVAINKQRPEQVGLIAIIQA 349

Query: 573 DEDFVTDLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIG-------SPQARGKALIN 620
             D   D+    T   +    S      G +    +    I           A+   +  
Sbjct: 350 YIDHRKDVVSRRTQYDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLISE 409

Query: 621 I-LSLNQGERITT----------IMPFPEDESSWN---NLYVVFATKHGNVRRNKLSDFI 666
              S  Q E I T          I    E++ S N   N Y    +    + +   S+  
Sbjct: 410 YQFSQAQAEAIVTLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDETILMKLIQSELK 469

Query: 667 QINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            I ++           E+  ++         E  + + T+ G   R  + + +       
Sbjct: 470 AIKKAYATDRLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSSLRSYQSSNF--- 526

Query: 722 VGVRGISLAKGDQVISMA--------IVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                + L  GD V+ +A        +++    +Y  +  Y       + L    ++ I 
Sbjct: 527 ---ADLGLRDGDHVLYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWKDLGEHLSQRIP 583

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
              ++  +      +     K  +  I+  + +G  K++   + +   R  K   +  + 
Sbjct: 584 IASDEKII------QVYPYAKDSQDTIVLATREGMIKQSKLSELKKI-RGHKNKASQIMP 636

Query: 834 KINEIGALVAVFPVND-----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             + +  +V  + VN+     N ++IL +  G  +R  ++EI       KGV+  +    
Sbjct: 637 LSSPLDEVVNCYLVNNQSDKQNGEVILFTALGFSLRYQISEINTVGLRAKGVISINLKDQ 696

Query: 889 ERVVSVERIRESEIVDE 905
           ++VV+   + + ++ ++
Sbjct: 697 DQVVNF--VYQDQVDED 711


>gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 800

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 276/887 (31%), Positives = 464/887 (52%), Gaps = 100/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TV F  NYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNP+I +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+VVTE+PY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 TEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVVV RTK+
Sbjct: 305 KEANSEAIKNYLFKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVVNRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVA---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   ++ Q  AI+ L+L RLT     +++NE   L   IKE   IL +  
Sbjct: 409 ----------TYGFTDAQAEAIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    T R + I   + +  ++ E  +  ED++++V+  GY+KR   
Sbjct: 459 ALLTVIKNELKDIRKRFKTERLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G S + ++  D +     V+T  ++L F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  ++++ + E I   +    +++     + + AT++G ++++    F     +  
Sbjct: 574 LGQHVSQLVAIEEDEYI---INVYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +AMK+  +DEI+SV+  T++  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LVAMKVKPQDEIISVQRLTEDQIITVLTHKGMSLTYNTNELSDTGLR-AAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V                                                   
Sbjct: 690 DFVVMTEVV--------------------------------------------------- 698

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q I+  +++G  KR      +++ R+ +GI      K N    +       +  +
Sbjct: 699 --EAGQTIIMATQRGAMKRIDFKVLQLAKRAQRGITLLKELKKNPHRIVAGHVVTENQSE 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ S+     G ++     +I  + + T G  I  T +   V+++ 
Sbjct: 757 YMIYSESHVEEGLIV-----DIHKSEQYTNGSFIVDTTEFGEVINMT 798



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-----CTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++   I +  K         EI  ++         E+ I+  T  G   R    +     
Sbjct: 466 NELKDIRKRFKTERLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSF---- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYM---KHMSAQRRLISGDTE 770
             N+ GV  I L +GD+++    V   D         R  ++   K    + + +     
Sbjct: 522 --NASGVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVS 579

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           ++ +++ D  +    +E+  Q+    E F +  +  G  K++ +  F+ + R  K + A 
Sbjct: 580 QLVAIEEDEYIINVYNEKNFQQ----EAFYIMATRNGMIKKSHAGLFKTT-RYTKPLVAM 634

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V   +E   +++V  + ++  I +++ KG  +    NE+        GV   +   ++ 
Sbjct: 635 KVKPQDE---IISVQRLTEDQIITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLKVEDF 691

Query: 891 VVSVERIR 898
           VV  E + 
Sbjct: 692 VVMTEVVE 699


>gi|229174258|ref|ZP_04301791.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
 gi|228609115|gb|EEK66404.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
          Length = 807

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 467/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEADELNKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I E + ++  + E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + N++SL + E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANLVSLERDEMIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   D ++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V                        A  + ++GD ++                 
Sbjct: 688 LKEDDYV------------------------ASGKPLNGDKDQ----------------- 706

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 707 -----------LILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 103/262 (39%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G    +L   + D++I  A V+    +    I ++      ++  
Sbjct: 562 LPVYEMPEI-RWKDLGQHVANLVSLERDEMIIWATVVPNFEEEKRFIVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +             I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 30/284 (10%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALEQEADELNKKIIELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD     
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGD----- 536

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----- 793
            ++   D +  E +    +      L   +  EI        V   +S ER + +     
Sbjct: 537 ILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIWATV 596

Query: 794 ----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               + +++FI+ V+  G  K+T    +++  R  +   A ++ K +    +V +F  + 
Sbjct: 597 VPNFEEEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDD---YVVDIFATDG 652

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
          Length = 804

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 288/837 (34%), Positives = 487/837 (58%), Gaps = 47/837 (5%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +E+++SYL YA++VI+GRAIPD+RDGLKPV RRI++ M +MG+ ++K + KCAR+ GE
Sbjct: 8   VEEEVKDSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKPHKKCARVVGE 67

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GK+HPHG+ A+YDAL RMAQD++ R  LI+G GNFGS+DGD  AA RYTE RL K ++
Sbjct: 68  VLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRYTEARLAKISN 127

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+ ++G + V  + N+DGS +EP VL A++P +L NG  GIAVGMAT+IP HNLGE++D
Sbjct: 128 TLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSIPPHNLGELID 187

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + ++ NP +  + L++++ GPDFPTG +I+G+ GIK  + TG+G I++RG   IE  S
Sbjct: 188 ALLLILKNPQVSEEELLKVLTGPDFPTGGIIVGKNGIKEYFLTGKGKIILRGRHKIEMGS 247

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
              + +V++EIPY VNKA ++EKI +L++EKR+  ++++RDES R+G R+V++LK+GA++
Sbjct: 248 KTNK-LVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIRIVLDLKKGANS 306

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + I+ +LY++T++Q  F V M++L    P+   +  +L  F+ FR+++  +R + +L   
Sbjct: 307 EKIVKKLYKHTTMQITFGVIMLSLVAGVPKVLPVKDVLLHFLTFRKDIQRKRLEKILEDL 366

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + R  +L  L+ A+  +D+V+ II+ S NP  A++ L +                     
Sbjct: 367 KKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCE--------------------- 405

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + +SE   + IL+LRL RLT L R+ I  +L    +EIKE    L+   + L I
Sbjct: 406 -----FLQISEEGAQGILDLRLQRLTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEI 460

Query: 501 IKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           ++ EL+ +K      RRT I ++   +   E+ I   +++VT+S LG++KR+   V+  Q
Sbjct: 461 LENELVEIKSNFADKRRTEISLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKKDVFERQ 520

Query: 560 RRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            +GGKG  G+      +D +    ++S    +LF SS G  Y    + +P  S  +RG  
Sbjct: 521 NKGGKGIDGIQKSSAIQDRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTG 580

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NIL L++ E+IT ++   E+E   +   ++ AT  G +++ KL + +   R+G IA+K
Sbjct: 581 IANILPLSEDEKITFMVQIKEEEIKKD---IILATSMGYLKKIKLENIVSKRRNGVIAIK 637

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  + ++      +E  + L +  G      +  +R     NS GV G+ L+K D+++ 
Sbjct: 638 LNDSESVVGACMVCEEKFL-LYSSNGFATLANLKDLRNMG-NNSHGVIGMRLSKDDKLLG 695

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +          D +   +   +   + +S D    +  +    V  + ++        + 
Sbjct: 696 IV--------PDSKYFIVIDKNGNGKKVSSDNF-TSHKRGTKGVRVSKNKLATILNYKEG 746

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             ++  +EKG   R      +  +R+ KG     + K+++  +++    V  N  +I
Sbjct: 747 MDLIIYTEKGKVIRIDIDSVKQLSRNAKG---IKLQKLDKADSVLDATIVRPNTDLI 800



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           + + I+T+S+ GF KR     F   N+ GKGI     S       +     +++ D+I+ 
Sbjct: 496 EGEVIVTISKLGFIKRMKKDVFERQNKGGKGIDGIQKSSA-IQDRIQTSIVLSNKDRILF 554

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIVDE 905
           +S KG    +    I   SR ++G  I +    ++DE++  + +I+E EI  +
Sbjct: 555 ISSKGRAYTLLAFSIPEFSRTSRGTGIANILPLSEDEKITFMVQIKEEEIKKD 607


>gi|257867818|ref|ZP_05647471.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257874146|ref|ZP_05653799.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
 gi|257801901|gb|EEV30804.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257808310|gb|EEV37132.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
          Length = 820

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 289/890 (32%), Positives = 473/890 (53%), Gaps = 97/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG + +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVIQ---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 412 ----------------HGFTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  TPR T I   + ++  E +  + +E++VVTV+  GYV
Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVTQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   +++L Q E I  +  + E +   N    V  +K+G +++ ++++F  
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEFEP 627

Query: 668 IN----RSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                 R   I    D  DE+++V      +E D+ L + L   +R+ ++ +    G  +
Sbjct: 628 WRTYKTRPMTIMKLKDETDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEV-PVVGPKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L   D +I+  +V                                        
Sbjct: 687 AGVKAMNLKADDYLINGLLVYSEGDTP--------------------------------- 713

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I+ ++++G  KR  + +     R+ +G+    + ++ +    
Sbjct: 714 ------------------IVLITQRGAAKRMLAQEITQLGRAKRGL--MVLRELKKNPHR 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V      +N Q+++ + KG    V  N+I I  R + G  I       ++
Sbjct: 754 VVYMGNGENQQLLVTNQKGQAFEVITNQIPINDRTSNGSFIMDEKTGGQI 803



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 72/177 (40%), Gaps = 15/177 (8%)

Query: 727 ISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           I + +GD ++           +++    +   R  +       + L    ++ + +L  D
Sbjct: 531 IGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQD 590

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             + G  +    +E+   + F+L +S+ G  K+T   +F    R+ K    T +   +E 
Sbjct: 591 EMIIGVFA---YKEIDPLKNFVL-ISKNGMIKQTRMTEFEPW-RTYKTRPMTIMKLKDET 645

Query: 839 GALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             LV VF  +  +   + LVS     +R  +NE+ +      GV   +   D+ +++
Sbjct: 646 DELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEVPVVGPKAAGVKAMNLKADDYLIN 702


>gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
 gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
          Length = 808

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/896 (31%), Positives = 460/896 (51%), Gaps = 99/896 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RVVI
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRVVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+              
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 412 --------------FSFTEAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I +    L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--- 667
            +  G+ L   + L   E +     F   ES   +   + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLGNDEYVLNAFVF---ESIDQDAKFLIATKEGYIKQVKLADLKPGRT 629

Query: 668 -INRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              R+ +        DE++SV     +   +   +  G  +R+ +  +       + GV+
Sbjct: 630 YKTRASRYVKLKTDADEVISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGA-LAAGVK 688

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + ++ +V  +D                                        
Sbjct: 689 CMDLR-DDTLANVILVSESD---------------------------------------- 707

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +  ++++G  K+    D  ++ R+ +G++     K  +   ++   
Sbjct: 708 -------------EVSILTQRGSYKKMKVADVPLTTRARRGVQILRELKT-KPHRIIFAE 753

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRES 900
            V  N +++L+   G    V   + ++  R + G  I   A+ + + ++  +I E 
Sbjct: 754 LVQTNQELVLLLSDGKQETVKPEDHQLNDRYSNGSFIVD-AETDTIENIYTKIIED 808



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 12/220 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV---LHA 744
               QE+ +LL +  G   R  + +    +  +  G     L   D  I  ++V    H 
Sbjct: 498 VMVAQEDVMLLVSHDGYVKRSSLRSFNA-SDNDENG-----LKDEDYPILQSVVNTLSHL 551

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++     + +         DT E  S       +  +      E   ++   L  +
Sbjct: 552 FIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVLNAFVFESIDQDAKFLIAT 611

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLI 863
           ++G+ K+    D +   R+ K   +  V    +   +++V  V  D  Q+   S  G  +
Sbjct: 612 KEGYIKQVKLADLKP-GRTYKTRASRYVKLKTDADEVISVSQVESDKSQVFCASYTGYGL 670

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R  ++E+        GV      +D+ + +V  + ES+ V
Sbjct: 671 RYSLDEVPTNGALAAGVKCMDL-RDDTLANVILVSESDEV 709


>gi|73916898|gb|AAZ93317.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 284/885 (32%), Positives = 457/885 (51%), Gaps = 84/885 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SR-LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
            R +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 455 RRTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 515 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 569

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E    I+     +   +      AT+ G ++R +  +F     
Sbjct: 570 KDIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 627 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 685 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 725

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 726 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 764

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 809



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 99/282 (35%), Gaps = 33/282 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK------LDSRDEI 684
           T ++   E+E+       +     G+ RR   +   +  R  K          L+   + 
Sbjct: 428 TDVVVLQEEEAELREKIAMLVAIIGDERRTMYNLMKKELREVKKKFATPRLSSLEDTAKA 487

Query: 685 L---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM--- 738
           +   +     +E+  +  TK G   R             +  +  I     D++I +   
Sbjct: 488 IEIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSA 541

Query: 739 -----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                 ++  +  +   R  +       + +    ++ IT+ + + ++      ++  + 
Sbjct: 542 KTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDA 601

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                     +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D
Sbjct: 602 TT----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD 654

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 655 -VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 695


>gi|326692693|ref|ZP_08229698.1| DNA topoisomerase IV subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 812

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 271/832 (32%), Positives = 428/832 (51%), Gaps = 49/832 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P+  L ALM  I+GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPEAPLSALMRYIKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I    G +++I +TE+PY+V K+ ++ KI  +   K +  IA++RDESDR+G  +VIE
Sbjct: 243 TEISDLKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKGVAGIAEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +G +A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF+ FR+EVV++R+
Sbjct: 303 LNKGTNAEGILTYLFKKTDLQISYNFNMVAIHNQRPVTVNLKQGLQAFLDFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ +             
Sbjct: 363 AFELAKAQARQHIVEGLIRMLSILDEVVATIRASQNRKDATQNLIDK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E  +L  +I     IL+ 
Sbjct: 410 -------------FQFTQPQAEAIVTLQLYRLTNTDVTQLEAEFATLTAKINHLNLILTE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I+ EL ++     TPRR++I   + D  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ESALKDVIRDELTAITKTYTTPRRSQIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A        +   + D+D    +  ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSYKASD------ADNGLADDDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-- 668
           +  G+     L +    E +  ++     ++          T  G +++  L+D +    
Sbjct: 571 KDTGEHFSQQLANWRPDEYVIQVVAV---DNLTQGGAFTIVTNDGFIKQTTLADMVPKAY 627

Query: 669 NRSGKIAMKLDSRD-EILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +A+KL + D ++++V       + D+LL +  G  +RF +S +     R + GV+
Sbjct: 628 KKKTSMAIKLKTDDSQVVNVAYTPTVTDQDVLLLSHNGVGLRFGLSDVPEIGARTA-GVK 686

Query: 726 GISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            + L   D + +  +V   D   A   E   +     A+        + +       +V 
Sbjct: 687 AMDLRGDDTIQAALMVTSPDQQVAIVAENGAFKYMPVAEINHSKRANKGLLIFTQKKTVP 746

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +++     +  +    IL  + +   +     D+  S R G G    DV K
Sbjct: 747 YHVAAATLFDQDVTALEIL--TSRWQVQDLQLSDYSPSQRVGNGQYVVDVKK 796



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 80/246 (32%), Gaps = 23/246 (9%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +    RS   A   +  D ++       +E+  +L ++ G   R  + + +     N   
Sbjct: 475 YTTPRRSQIEA---EVEDLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSYKASDADNG-- 529

Query: 724 VRGISLAKGDQVISM--------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                LA  D  + +          +         R  +       +      ++++ + 
Sbjct: 530 -----LADDDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKWKDTGEHFSQQLANW 584

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + D  V   ++ +       +      V+  GF K+T+  D        K   A  +   
Sbjct: 585 RPDEYVIQVVAVDNL----TQGGAFTIVTNDGFIKQTTLADMVPKAYKKKTSMAIKLKTD 640

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +     VA  P   +  ++L+S  G  +R  ++++      T GV       D+ + +  
Sbjct: 641 DSQVVNVAYTPTVTDQDVLLLSHNGVGLRFGLSDVPEIGARTAGVKAMDLRGDDTIQAAL 700

Query: 896 RIRESE 901
            +   +
Sbjct: 701 MVTSPD 706


>gi|307706407|ref|ZP_07643217.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
 gi|307618194|gb|EFN97351.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
          Length = 811

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/874 (32%), Positives = 451/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDASVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +     +++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +      AT+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVV---DQFDDATTYFAATRFGQIKRVERKEFSPWRTYKSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ ++L   D V+ 
Sbjct: 627 KDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKAMNLKADD-VLQ 683

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            A + +  + Y                                          Q   LK 
Sbjct: 684 SAFICNTSSFYL---------------------------------------LTQRGSLKR 704

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             I  +      KR S     + N+  +   A  V++   +G L +     ++  +I+ S
Sbjct: 705 VSIDEIPATSRAKRGSQVLRELKNKPHRVFLAGAVAEQGFVGDLFSTEVDGNDQTLIVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKI--AMKLDSRDEIL 685
           T ++   E+E+       + A   G    +      +  ++ +         L+   +++
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKVI 477

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
              +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQAAK 531

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 592 T----YFAATRFGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 645

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +   D+ + S
Sbjct: 646 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDVLQS 684


>gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 817

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/750 (37%), Positives = 408/750 (54%), Gaps = 51/750 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
              + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D P
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + +DTVDF PNYDGS QEP+ L A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNLGEV+     +I +P  DLDALM  + GPD PTG  I+G  G+++AY  G
Sbjct: 188 GMATNMAPHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIVGLGGVRDAYEKG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  I+D++D +D
Sbjct: 248 RGTFKIRATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RQHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A++ L+ R   
Sbjct: 368 HRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIAR--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+VQT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FELSDVQTQYILDTPLRRLTKFDRIELESERDRLKAE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I+E   IL S + L  ++  EL  V  +  T RRT ++E            +  +   V 
Sbjct: 462 IEELTRILDSDAELRKLVSAELAQVAKKFGTERRTVLLESADAPVTAVPLEVADDPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R       A      G         D +      +    +   +S G + + 
Sbjct: 522 LSSTGLLART------ANGEPFPGEEQAKRAKHDVIVSAVPATARGDLGAVTSTGRLLRL 575

Query: 602 KVWRLPI------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LPI          A G  +   LSL  GE +  +    E     ++  +   T+ G
Sbjct: 576 AVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICLTTLDE-----SSPGLAIGTEQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R         N+     + L   D I+  VE  T E D++  T   Q +R+P S +R
Sbjct: 631 VVKRVVPD--YPANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYPASQVR 688

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
              GR + G+ GI L  G +VIS   V  A
Sbjct: 689 P-QGRPAGGMAGIKLGAGAKVISFTAVDPA 717



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 27/263 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +       G+   K    D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANGEPFP----GEEQAKRAKHDVIVSAVPATARGDLGAVTSTG 570

Query: 704 QCVRFPISAIRVFAG----RNSVGVRGI----SLAKGDQVISMAIVLHADADYD-ERICY 754
           + +R  +  + +        N  G   I    SL  G+++I +  +  +           
Sbjct: 571 RLLRLAVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICLTTLDESSPGLAIGTEQG 630

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +          + D  E+  LK    + G +      EL+  E+ ++ +++     R  +
Sbjct: 631 VVKRVVPDYPANKDELEVIGLKEGDRIVGAV------ELRTGEEDLVFITDDAQLLRYPA 684

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL--------IRVP 866
              R   R   G+    +    ++ +  AV P  D     +    GTL           P
Sbjct: 685 SQVRPQGRPAGGMAGIKLGAGAKVISFTAVDPAVDAVVFTIAGSHGTLDDSVQQSAKLTP 744

Query: 867 VNEIRIASRATKGVVIFSTAKDE 889
            ++     RAT GV      K E
Sbjct: 745 FDQYPRKGRATGGVRCQRFLKGE 767



 Score = 54.5 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 21/228 (9%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +   + +V     ++    L +  G   R               G      AK D ++S
Sbjct: 501 SADAPVTAVPLEVADDPCRVLLSSTGLLARTANGEPFP-------GEEQAKRAKHDVIVS 553

Query: 738 MA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--- 793
                   D         +  ++     I  +T    +L   + +   +S E  +EL   
Sbjct: 554 AVPATARGDLGAVTSTGRLLRLAVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICL 613

Query: 794 ---KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +   +E+G  KR    D+     +   +    + + + I   V +      
Sbjct: 614 TTLDESSPGLAIGTEQGVVKRV-VPDYPA---NKDELEVIGLKEGDRIVGAVELRT--GE 667

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + ++ ++D   L+R P +++R   R   G+         +V+S   + 
Sbjct: 668 EDLVFITDDAQLLRYPASQVRPQGRPAGGMAGIKLGAGAKVISFTAVD 715


>gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 834

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 307/838 (36%), Positives = 481/838 (57%), Gaps = 40/838 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K
Sbjct: 16  DHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDK 75

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA R
Sbjct: 76  PHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +++L+ D+  DTV F  NYD S  EP  L    PN+LVNG  GIAVGMAT+
Sbjct: 136 YTEARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATS 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNL EVV    A IDN DI +D ++ + I GPDFPTGA++   + ++  Y TGRGS+
Sbjct: 196 IPPHNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSV 255

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR     E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G 
Sbjct: 256 IIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGI 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R++IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V
Sbjct: 315 RIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVSV 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +++R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ EL  +        
Sbjct: 375 IIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNK-------- 426

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 E Q +AIL++RL RL GL RD I  E+ ++   +    
Sbjct: 427 ------------------YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLD 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +++++     ++K +L  + D+    RRT  I E L+++EDE+ I     ++ +S  GY
Sbjct: 469 VLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGY 528

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++R+    +R Q+RGG+G   V     D +    +      VLFF++ G VY+ K++ + 
Sbjct: 529 IRRINPDEFRIQKRGGRGV-SVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIR 587

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             S  ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F 
Sbjct: 588 SYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFE 645

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            INR+GK A+ L   D+++SV   T ++ + +  + G+ +R   S +   + R   GVR 
Sbjct: 646 NINRNGKKAINLRENDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQS-RVGGGVRA 704

Query: 727 ISLAKGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + L   D V+    +  L        +  + K      R+   + + I  +  +      
Sbjct: 705 LKLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +    +E  L    I+ +S  G   +T   +    +R+  G++A  ++   EI A+ 
Sbjct: 765 KAIIGARETDL----IMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTDNQEINAIT 818


>gi|194397352|ref|YP_002037490.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae G54]
 gi|194357019|gb|ACF55467.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae G54]
          Length = 823

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + G DFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGXDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E    I+     +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 686 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + + ++      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 656 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
 gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
          Length = 814

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 291/875 (33%), Positives = 456/875 (52%), Gaps = 85/875 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +  V T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQAVKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +      AT+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVV---DQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ + L ++ G  +RF I  + V     + GV+ ++L + D V+ 
Sbjct: 627 KDETDQIVAVAPIKLDD-VFLISQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD-VLQ 683

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            A + +  + Y                                          Q   LK 
Sbjct: 684 SAFICNTSSFYL---------------------------------------LTQRGSLKR 704

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV- 856
             I  +      KR       + N+  +   A  V++   +G L +   V++NDQ +LV 
Sbjct: 705 VSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDLFST-EVDENDQTLLVQ 763

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           S+KGT+  + + ++ ++ R + G  I  T  DE V
Sbjct: 764 SNKGTVYEIRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E+  +  TK G   R             +  +  I     D++I +  V 
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQAVK 531

Query: 743 HAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                       +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D + 
Sbjct: 592 T----YFAATRLGQIKRVERKEFTPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VF 645

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 646 LISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
 gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 979

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 307/954 (32%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               LV V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELVNVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELVNVDINFENATVILVTKNGMGIKFSATAINPMG-RVASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + +   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEGIDDK--TLEAYNDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
 gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
          Length = 826

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 285/885 (32%), Positives = 454/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  T R + + +     +++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATSRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   I +    E I         +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQSITNFETNEEILYAEVV---DQFDDATTYFAATRLGQIKRVERKEFSPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YKSKSVKYAKLKDETDQIVAVAPIRLDD-VLLISQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D + + A + +  + Y                                      
Sbjct: 686 MNLKADDALQA-AFICNTSSFYL------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q   LK   I  +      KR       + N+  +   A  V++   +G L +   
Sbjct: 708 --LTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGLVGDLFSTEM 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 22/276 (7%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINR--SGKIAMKLDSRDEIL 685
           T ++   E+E+       + A   G    +      +  ++ +  +      L+   +++
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATSRLSTLEDTAKVI 489

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
              +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 743 HAD-----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                         I    H  A  R          S+ N  + E  +  E   +     
Sbjct: 544 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQSITNFETNEEILYAEVVDQFDDAT 603

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            +    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++L+S
Sbjct: 604 TY-FAATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIRLDD-VLLIS 660

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             G  +R  + E+ +      GV   +   D+ + +
Sbjct: 661 QNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQA 696


>gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 803

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/736 (35%), Positives = 419/736 (56%), Gaps = 41/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ +    +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 673 KIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +AMK+   D ++SV     +     I L T  G  + +P+S +     R + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELPDTGLR-ATGIKAINL 689

Query: 730 AKGDQVISMAIVLHAD 745
              D V+    +   D
Sbjct: 690 KDEDHVVLADHIQTED 705



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 106/282 (37%), Gaps = 16/282 (5%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I+ I    ++    +   ++  T+ G ++R  L      N SGK  + L  RD +L 
Sbjct: 484 EEKISEI-KIDKEVIVPSETVMLSLTQEGYIKRTSL---RSFNASGKEEIGLKERDGVLK 539

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHA 744
           +     ++  ++ T  G+ +  P+  +        +G  V  I   + D+ +     +  
Sbjct: 540 IIETNTQDYAMVFTNKGRYLLIPVHKL-PDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFIL 801
             D    I   +    ++ L+SG     T+             +            Q I 
Sbjct: 599 FNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADASSQLIT 658

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            ++ +G        +   +     GI+A ++   +    +V    +   D I++ + +G 
Sbjct: 659 LLTHRGMSLTYPMSELPDTGLRATGIKAINLKDED---HVVLADHIQTEDTILIATQRGA 715

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
           L R+    ++ A RA +G+ +    K +  RVV+  R+   E
Sbjct: 716 LKRISFKVLQQAKRAQRGITLLKELKKQPHRVVA-ARVCRPE 756



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 10/219 (4%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E  +L  T+ G   R  + +       N+ G   I L + D V+ +      D  
Sbjct: 496 VIVPSETVMLSLTQEGYIKRTSLRSF------NASGKEEIGLKERDGVLKIIETNTQDYA 549

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++    +  +     +   D  +  S       +  + +         E+ I+T +
Sbjct: 550 MVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K++    F+ + R+ K + A  V + + + +++ V     +  I L++ +G  + 
Sbjct: 610 RQGMIKKSLLSGFKST-RTTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLT 668

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            P++E+        G+   +   ++ VV  + I+  + +
Sbjct: 669 YPMSELPDTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707


>gi|73916854|gb|AAZ93295.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 451/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG  +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGAFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KG +    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGIIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|227893711|ref|ZP_04011516.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864571|gb|EEJ71992.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 818

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 448/884 (50%), Gaps = 93/884 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R++IV TEIP+ VNK+ +++KI E+   K I  IA++RDE+DR G  +V+
Sbjct: 244 KTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKYDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E   L   +++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQTKLNKLVEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E   PRRT+I +     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFSNPRRTQISQESAKVEIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST T++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDTDNG-----LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F    +  N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQIIRVFAFNNLNADEN---FLLATNDGYIKQLELANLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL S+D  ++ V+        +I L T     +R+ IS I   +G  ++GV
Sbjct: 630 YKSRAMTAIKLKSKDSLLVGVDLVKPNAKKEITLFTHRAYAIRYDISEI-PASGAKAIGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D ++   +V                                           
Sbjct: 689 KSANLKDDDYIVGYVLV------------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     L    +  ++++G  K+         +R+ +G+      K  +   + A+
Sbjct: 706 ------DSKYLDLMHVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKT-KPHRITAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            P   +  + + +     I++  NE  +  R + G  +  T  D
Sbjct: 759 VPYAQDHILHITTSSDRHIKIKTNEYPLGDRYSNGSFVIDTTTD 802



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 14/236 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+           EI        E   +L ++ G   R  + + +        
Sbjct: 475 KEFSNPRRTQISQESAKV--EIDEKALVADEQVRVLISRDGYLKRSSLRSYQS-TDDTDN 531

Query: 723 GVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G     L  GD+VI   +++ + +     +      + +         +T +  S +   
Sbjct: 532 G-----LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGL 586

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I           ++  L  +  G+ K+    + + + R+ K    T +   ++  
Sbjct: 587 DSDEQIIRVFAFNNLNADENFLLATNDGYIKQLELANLQPT-RTYKSRAMTAIKLKSKDS 645

Query: 840 ALVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            LV V  V  N   +I L + +   IR  ++EI  +     GV   +   D+ +V 
Sbjct: 646 LLVGVDLVKPNAKKEITLFTHRAYAIRYDISEIPASGAKAIGVKSANLKDDDYIVG 701


>gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 979

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 307/954 (32%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               LV V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELVNVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELVNVDINFENATVILVTKNGMGIKFSATAINPMG-RVASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + I   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEGIDDK--TLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 662

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/682 (40%), Positives = 424/682 (62%), Gaps = 31/682 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSN---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 415 ----------------FGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+  E +L     D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I TI      +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETC 690
              G I +KL+ +D + S E  
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIV 657



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 109/244 (44%), Gaps = 25/244 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           + + L++ DE++          I+ ++KL +  +  + +    +   +  V  + L K  
Sbjct: 384 LNIALNNIDEVI---------KIIKSSKLAKDAKERLVSNFGLSEIQANSVLDMRLQKLT 434

Query: 733 -------DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                  ++ +++ + L  D +             +   I+   +     +     +  +
Sbjct: 435 ALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEEV 494

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V   
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     ++
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKDL 609

Query: 903 VDEA 906
            D+A
Sbjct: 610 TDDA 613



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA---TDVSKINEIGALVAVFPVNDNDQI 853
             ++  +S +G     ++Y+ + S+R+ KG       ++    EI  +     + D+  +
Sbjct: 556 HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYL 615

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L +  G + R    + +     ++GV++      + V S E +
Sbjct: 616 LLTTASGKIARFESTDFKAVK--SRGVIVIKLNDKDFVTSAEIV 657



 Score = 41.4 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690
           ++     +       VV  TK G ++R   +++      GK   +  L+  DEI+     
Sbjct: 494 VLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCV 553

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISM 738
              + + + +  G+        I+  + R S G      I+L   ++++++
Sbjct: 554 NTHDYLFMISNEGKLYLINAYEIK-DSSRASKGQNISELINLGDQEEILTI 603


>gi|294631866|ref|ZP_06710426.1| DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292835199|gb|EFF93548.1| DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 818

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 290/754 (38%), Positives = 413/754 (54%), Gaps = 51/754 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      DE  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDEPYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL R+AQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQSFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+ +A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I  P+ DLDALM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YESGRGTFKIRATVTVETVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVK 304

Query: 301 DESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR+   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR++Y   + RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFEVVRRRSEYRRGRRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSEVQT+ IL+  L RLT   R ++  E   
Sbjct: 425 R--------------------------FSLSEVQTQYILDTPLRRLTKYDRIELEAEKEK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVRED 537
           L  EI+E   IL S + L  ++  EL +V  +  TPRRT ++E   +        +  + 
Sbjct: 459 LTAEIEELTRILDSDAELRKLVSTELAAVAKKFGTPRRTLLLEAGAVPVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R P      Q   GK          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTPNDEPLPQDADGKRVK------HDVIVSSVPATARGEVGVVTSAGR 572

Query: 598 VYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP     A       G  +   +SL   E +  +    E     ++  +   
Sbjct: 573 LLRVNVVDLPQLPETATAPNLSGGAPITEFVSLGDDETVICLTTLDE-----SSPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         N+     + L   D I+  VE  T E D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPD--YPANKDELEVITLREGDRIVGAVELRTGEEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           S +R   GR + GV GI LA G +VIS   V  A
Sbjct: 686 SQVRP-QGRPAGGVAGIKLADGAKVISFTAVDPA 718



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 97/307 (31%), Gaps = 40/307 (13%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G     +L L  G      +P        ++   V  +  G + R    + +  + 
Sbjct: 488 AKKFGTPRRTLL-LEAGAVPVAAVPL----QVADDPCRVLLSSTGLLARTPNDEPLPQDA 542

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV----GVRG 726
            GK        D I+S    T   ++ + T  G+ +R  +  +       +     G   
Sbjct: 543 DGKRVKH----DVIVSSVPATARGEVGVVTSAGRLLRVNVVDLPQLPETATAPNLSGGAP 598

Query: 727 I----SLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           I    SL   + VI +  +  +            +K +         + E IT  + D  
Sbjct: 599 ITEFVSLGDDETVICLTTLDESSPGLALGTEQGVVKRVVPDYPANKDELEVITLREGDRI 658

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V          EL+  E+ ++ +++     R  +   R   R   G+    ++   +   
Sbjct: 659 VGAV-------ELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLADGAK--- 708

Query: 841 LVAVFPVNDNDQIILVSDKG-----------TLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +++   V+     ++ +  G           T    P ++     RAT GV      K E
Sbjct: 709 VISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKVTPFDQYPRKGRATGGVRCQRFLKGE 768

Query: 890 RVVSVER 896
             +S   
Sbjct: 769 DCLSFAW 775


>gi|326406528|gb|ADZ63599.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 840

 Score =  559 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 275/890 (30%), Positives = 460/890 (51%), Gaps = 79/890 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+V+R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIVKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +   ++E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G+     RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQ 667
           +  G+ L   L + +  E++  +    E         ++  T++G ++   R   S +  
Sbjct: 571 KDIGEHLSQSLSNFSADEKVIFVQIVDEFAGEN----LLVVTRNGQIKQIERESFSPWRT 626

Query: 668 INRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                    KL    DEI+ +      + ++L ++ G  +RF +  + V   R + GV+ 
Sbjct: 627 YRSKSTPYAKLKGEDDEIVLITPVQFAD-LMLISENGYALRFNLDDVPVLGAR-AAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L  GD++ S   V         +  ++K               + +    ++   N  
Sbjct: 685 MNLKNGDKIKSAFFVNSNSWYLLTQRAFIKR--------------VKTDDIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVS-EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +  + LK     +            ++  +                 +++      A  
Sbjct: 731 LQVLRTLKTNNHTVFAAGLINSTADLSALTE-----------------ELDLFSQAKAPA 773

Query: 846 PVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 774 TKETDEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 834

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 305/838 (36%), Positives = 482/838 (57%), Gaps = 40/838 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K
Sbjct: 16  DHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDK 75

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA R
Sbjct: 76  PHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +++L+ D+  DTV F  NYD S +EP  L    PN+LVNG  GIAVGMAT+
Sbjct: 136 YTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATS 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNL EVV    A IDN DI +D ++ + I GPDFPTGA++   + ++  Y TGRGS+
Sbjct: 196 IPPHNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSV 255

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR     E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G 
Sbjct: 256 IIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGI 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R++IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V
Sbjct: 315 RIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNV 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +++R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ +L  +        
Sbjct: 375 IIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNK-------- 426

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 E Q +AIL++RL RL GL RD I  E+ ++   +    
Sbjct: 427 ------------------YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLD 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +++++     ++K +L  + D+    RRT  I E L+++EDE+ I     ++ +S  GY
Sbjct: 469 ILINTKEEQNNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGY 528

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++R+    +R Q+RGG+G   V     D +    +      VLFF++ G VY+ K++ + 
Sbjct: 529 IRRINPDEFRIQKRGGRGV-SVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIR 587

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             S  ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F 
Sbjct: 588 SYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFE 645

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            INR+GK A+ L   D+++SV   T ++ + +  + G+ +R   S +   + R   GV+ 
Sbjct: 646 NINRNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQS-RVGGGVKA 704

Query: 727 ISLAKGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + L   D V+    +  L        +  + K      R+   + + I  +  +      
Sbjct: 705 LKLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +    +E  L    I+ +S  G   +T   +    +R+  G++A  ++   EI A+ 
Sbjct: 765 KAIIGARETDL----IMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTDNQEINAIT 818


>gi|269836114|ref|YP_003318342.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785377|gb|ACZ37520.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 813

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/908 (30%), Positives = 464/908 (51%), Gaps = 107/908 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + ++    E+ I +   +   +++++ YA+ V+  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MATTVYTNG--HEETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   N+  VK A + G+V+  YHPHG++A+YDA  RMAQD+++R  LIEGQGNFGS+
Sbjct: 59  YENGHRSNRPTVKSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY--DGSFQEPVVLCARYPNVLVNG 178
           DGD  AA RYTE RL      LL D+ ++TV F   Y    +  +PV L AR P +  N 
Sbjct: 119 DGDAAAAYRYTEMRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPIC-NP 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T+IP HNL E +   +A++DNP++ +D LM+I+ GPDFPTG  I+G  GI+
Sbjct: 178 SSGIAVGLSTDIPPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGTDGIR 237

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
               +G+G +VIRG   +E+    R  +VVTEIP  ++++ ++  I   V + ++  + D
Sbjct: 238 AYLESGKGRLVIRGEVRLEEELRQR-NLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTD 295

Query: 299 LRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPER 351
           +R+ESD +   R+V+EL+R A+ +V+LNQLYR+T LQ+  +VNMV L G       +P R
Sbjct: 296 VRNESDDEKGTRIVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRR 355

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             ++ +L+ +   + +V+ RR +Y L KA++R HV+ GL I  A+ DE+VRI + + +  
Sbjct: 356 TGMLDLLRYWNRHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRN 415

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A+ ++  +                            L+++Q   I  + LA++T L   
Sbjct: 416 VAKEKIKVK--------------------------YNLTDIQADVIANMTLAQVTRLDAA 449

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDE 530
               E   L   IKE   +L+S ++ + ++K+EL ++  E    RRTRI  EG  ++   
Sbjct: 450 KYAEEKKELTKRIKELQALLASEAKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASV 509

Query: 531 DCIVRE-DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
             ++ E  +++  S  G VK +P + ++  R G            + +  +   ST   +
Sbjct: 510 ASLIEERPILIVASQSGRVKALPENAFKRARAG-------RTARGEGLAAIVPASTLDYL 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  +  G VY  +   +P G+  + G+    +  L   E + TI+P  E      + YVV
Sbjct: 563 LVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPDEALATILPVNE---LTEDRYVV 619

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + T +G V++  L+++  I  +G   ++L   D +++        + L+    GQ +RF 
Sbjct: 620 WFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFA 679

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR+  GV  I+L  G +V++   +                            
Sbjct: 680 DDEVRA-TGRDGQGVNAIALKAGAEVVTALAIPPK------------------------- 713

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      +  +L V+ +G GKRT+  DF    R+  G+ A
Sbjct: 714 --------------------------SDGDVLVVTAQGMGKRTALKDFPARRRATAGVAA 747

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++K +    +     V  +D ++L +  G  ++V V ++R   RATKG  +   AK++
Sbjct: 748 ITLAKGDR---IAGAALVTPDDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLLEVAKND 804

Query: 890 RVVSVERI 897
            V ++ R+
Sbjct: 805 HVATIARV 812



 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 107/296 (36%), Gaps = 17/296 (5%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q  G      +     E I ++    E+        ++ A++ G V+     +  +  R
Sbjct: 487 AQEHGDDRRTRIDREGQEEIASVASLIEER-----PILIVASQSGRVKALP-ENAFKRAR 540

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS-- 728
           +G+ A      + + ++   +  + +L+ T+ G+        +     R S G       
Sbjct: 541 AGRTAR----GEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEV-PAGTRASSGEPAQKVF 595

Query: 729 -LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   + +    I+   +   D  + +       ++    +   ITS   +         
Sbjct: 596 GLKPDEAL--ATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDR 653

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                L       L ++  G   R +  + R + R G+G+ A  +    E+   +A+ P 
Sbjct: 654 VVAATLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPK 713

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +D D +++V+ +G   R  + +     RAT GV   + AK +R+     +   + V
Sbjct: 714 SDGD-VLVVTAQGMGKRTALKDFPARRRATAGVAAITLAKGDRIAGAALVTPDDDV 768



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 13/228 (5%)

Query: 679 DSRDEILSVETCTQENDILLT-TKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVI 736
           + ++EI SV +  +E  IL+  ++ G+    P +A  R  AGR + G    ++     + 
Sbjct: 501 EGQEEIASVASLIEERPILIVASQSGRVKALPENAFKRARAGRTARGEGLAAIVPASTLD 560

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            + ++      Y  R   +   +  R       +++  LK D ++   +      E    
Sbjct: 561 YLLVLTRGGRVYLSRGHEV--PAGTRASSGEPAQKVFGLKPDEALATILPVNELTE---- 614

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +++++  +  G  K+TS  ++R    +G                +VA        + +++
Sbjct: 615 DRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDR-----VVAATLSESGGEYLVI 669

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +  G  +R   +E+R   R  +GV   +      VV+   I      D
Sbjct: 670 ASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDGD 717


>gi|297571343|ref|YP_003697117.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931690|gb|ADH92498.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 804

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 284/851 (33%), Positives = 431/851 (50%), Gaps = 64/851 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   + I  + +++EM+NS+L Y+ +VI  RA+PD RDGLKPV RRILF M  MG++ ++
Sbjct: 3   QTHTEHIMDIDVSEEMRNSFLEYSYSVIYSRALPDARDGLKPVQRRILFQMDSMGLKPDR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK +R+ G+VMG+ HPHG+AAIYDA+ R+AQD+SLRL  ++G GNFGS D D PAA R
Sbjct: 63  GHVKSSRVVGDVMGRLHPHGDAAIYDAMVRLAQDFSLRLPFVDGHGNFGSPD-DGPAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+  AA  +   LG+D VD  PNYD ++QEP VL A  P++LVNG  GIAVGMATN
Sbjct: 122 YTEVRMAPAALAMTASLGEDVVDMVPNYDNTYQEPEVLPAAIPSLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV+ G   +++NPD  L+ LM  I GPD P G  I+G  GI+ AY TGRG   
Sbjct: 182 MAPHNLNEVIAGARFLLENPDACLEELMRYIPGPDLPDGGKIVGIDGIRQAYKTGRGIFR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
            R  +HIE  S  ++ I+ TE+PY      ++EKI + V  K++  I+ +++ +DR    
Sbjct: 242 TRATAHIENVSPRKKGIIFTELPYLTGPEKIIEKIKDGVSSKKLQGISGVQNLTDRHHGT 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+K   + + +L  LY++T L+  F +N VAL   +P    L  IL+ F+  R  V
Sbjct: 302 RLVVEVKNAFNPEAVLAALYQHTPLEESFGINNVALVEGQPRTMGLKEILQVFLDHRRSV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR ++ L KA+DR H++ GL IA+ ++D+V+ IIR S +  TA   L+          
Sbjct: 362 TKRRCEFRLRKAQDRLHLVEGLLIAIVDIDDVIAIIRSSEDSATAANRLIS--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q   ILELRL RLT   + ++  E NSL   I E L
Sbjct: 413 -----------------VFDLSQPQADYILELRLRRLTKFSQIELETERNSLQETIDELL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-----REDMVVTVS 543
            IL S  R+  +I  EL  V  +  TPRRT ++E     + +          +   V +S
Sbjct: 456 AILGSEDRMRQLISTELADVARQYGTPRRTVLLEADAVQKSKANAPKLKITDDPCRVLLS 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R+          G   R        D +  +   +  + +   ++ G +++  V
Sbjct: 516 ATGKIARIV--------GGEPPRREGPRAQHDALASVVSTTNLSDIGVVTTAGNIHRLNV 567

Query: 604 WRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +P           A G  L ++L +   E    I+   E     ++  +  AT  G +
Sbjct: 568 LDIPAMPDTESAPSLAAGAQLTDLLLMEPNEEPLAIISLEE-----SDTVLTLATAQGKI 622

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  L      N+S   A+ L   D ++        + I+L T   Q +RF  +A+R   
Sbjct: 623 KRVALD---PPNKSQFDAITLLDGDRVIGAGVSGDTDVIVLVTSDAQLLRFDANAVRP-Q 678

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR+  G+ GI +A G QVI++ IV + D      +       A     +G + ++T L  
Sbjct: 679 GRSGQGIAGIRVADGAQVIALGIVPNDDLAGHGVVTIASSSDALPGTTAG-SAKVTPLDR 737

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +        R Q     E    T+++   G+       R   ++GK +   D+ +  +
Sbjct: 738 YPAKGRGTGGVRAQRYLRDED---TLTQAWVGQLPP----RAVGKNGKPVTLPDIDERRD 790

Query: 838 IGALVAVFPVN 848
                    VN
Sbjct: 791 GSGTALAEIVN 801



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 628 ERITTIMPFPEDESSWNNLYVV----FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           E I  ++     E     L        A ++G  RR  L +   + +S   A KL     
Sbjct: 449 ETIDELLAILGSEDRMRQLISTELADVARQYGTPRRTVLLEADAVQKSKANAPKLK---- 504

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                  T +   +L +  G+  R          G  +      S+     +  + +V  
Sbjct: 505 ------ITDDPCRVLLSATGKIARIVGGEPPRREGPRAQHDALASVVSTTNLSDIGVV-- 556

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  +   +      +        L +   +E N        L+  +  +   
Sbjct: 557 TTAGNIHRLNVLDIPAMPDTESAPSLAAGAQLTDLLLMEPNEEPLAIISLEESDTVLTLA 616

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  KR +      S        A  +   +    ++      D D I+LV+    L+
Sbjct: 617 TAQGKIKRVALDPPNKS-----QFDAITLLDGDR---VIGAGVSGDTDVIVLVTSDAQLL 668

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R   N +R   R+ +G+     A   +V+++  +   ++ 
Sbjct: 669 RFDANAVRPQGRSGQGIAGIRVADGAQVIALGIVPNDDLA 708



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 88/268 (32%), Gaps = 32/268 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +     R G  A      D + SV + T  +DI + T  G
Sbjct: 507 DDPCRVLLSATGKIARIVGGE--PPRREGPRAQH----DALASVVSTTNLSDIGVVTTAG 560

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-----DYDERICYMKHM 758
              R  +  I       S      SLA G Q+  + ++   +        +E    +   
Sbjct: 561 NIHRLNVLDIPAMPDTES----APSLAAGAQLTDLLLMEPNEEPLAIISLEESDTVLTLA 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
           +AQ ++     +     + D+    +        +      I+ V+      R  +   R
Sbjct: 617 TAQGKIKRVALDPPNKSQFDAITLLDGDRVIGAGVSGDTDVIVLVTSDAQLLRFDANAVR 676

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDND-------------QIILVSDKGTLIRV 865
              RSG+GI    V+       ++A+  V ++D               +  +  G+    
Sbjct: 677 PQGRSGQGIAGIRVADG---AQVIALGIVPNDDLAGHGVVTIASSSDALPGTTAGSAKVT 733

Query: 866 PVNEIRIASRATKGVVIFS-TAKDERVV 892
           P++      R T GV        ++ + 
Sbjct: 734 PLDRYPAKGRGTGGVRAQRYLRDEDTLT 761


>gi|15900740|ref|NP_345344.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae TIGR4]
 gi|19861240|sp|P72525|PARC_STRPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14972328|gb|AAK74984.1| topoisomerase IV, subunit A [Streptococcus pneumoniae TIGR4]
          Length = 823

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/885 (31%), Positives = 453/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 686 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 604 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 656 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|306833367|ref|ZP_07466494.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
 gi|304424137|gb|EFM27276.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
          Length = 819

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 292/894 (32%), Positives = 457/894 (51%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LM  + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMAFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+E++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKEIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNASTVEEIGK-----RDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E    + +     ATK G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFATDEYVL----YAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   ++ D ++++     ++ +++ T  G  + F I  + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V S A V + D+                    G  + + +    ++   N  
Sbjct: 685 INLKDDDFVAS-AFVANTDS-------------FFILTQRGSLKRMATELIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                                S   +   L  +  
Sbjct: 731 LQVLRELKSKPHRVFMA------------------------GPVHTSNDVQNLDLFTIST 766

Query: 847 VNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V+ +D   + + S+KGT+ +  + ++ ++ R + G  I     DE V +  RI+
Sbjct: 767 VDSDDVETLEVHSNKGTVYQAILEDLNLSERTSNGSFISDKISDEGVFN-ARIK 819


>gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713]
          Length = 808

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 285/896 (31%), Positives = 460/896 (51%), Gaps = 99/896 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RVV+
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRVVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+              
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 412 --------------FSFTEAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I +    L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--- 667
            +  G+ L   + L   E +     F   ES   +   + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLGNDEYVLNAFVF---ESIDQDAKFLIATKEGYIKQVKLADLKPGRT 629

Query: 668 -INRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              R+ +        DE++SV     +   +   +  G  +R+ +  +       + GV+
Sbjct: 630 YKTRASRYVKLKTDADEVISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGA-LAAGVK 688

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + ++ +V  +D                                        
Sbjct: 689 CMDLR-DDTLANVILVSESD---------------------------------------- 707

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +  ++++G  K+    D  ++ R+ +G++     K  +   +V   
Sbjct: 708 -------------EVSILTQRGSYKKMKVADVPLTTRARRGVQILRELKT-KPHRIVFAE 753

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRES 900
            V  N +++L+   G    V   + ++  R + G  I   A+ + + ++  +I E 
Sbjct: 754 LVQINQELVLLLSDGKQEIVKPEDHQLNDRYSNGSFIVD-AETDTIENIYTKIIED 808


>gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/736 (35%), Positives = 419/736 (56%), Gaps = 41/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ +    +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 673 KIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +AMK+   D ++SV     +     I L T  G  + +P+S +     R + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELLDTGLR-ATGIKAINL 689

Query: 730 AKGDQVISMAIVLHAD 745
              D V+    +   D
Sbjct: 690 KDEDHVVLADHIQTED 705



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 106/282 (37%), Gaps = 16/282 (5%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I+ I    ++    +   ++  T+ G ++R  L      N SGK  + L  RD +L 
Sbjct: 484 EEKISEI-KIDKEVIVPSETVMLSLTQEGYIKRTSL---RSFNASGKEEIGLKERDGVLK 539

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHA 744
           +     ++  ++ T  G+ +  P+  +        +G  V  I   + D+ +     +  
Sbjct: 540 IIETNTQDYAMVFTNKGRYLLIPVHKL-PDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFIL 801
             D    I   +    ++ L+SG     T+             +            Q I 
Sbjct: 599 FNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADASSQLIT 658

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            ++ +G        +   +     GI+A ++   +    +V    +   D I++ + +G 
Sbjct: 659 LLTHRGMSLTYPMSELLDTGLRATGIKAINLKDED---HVVLADHIQTEDTILIATQRGA 715

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
           L R+    ++ A RA +G+ +    K +  RVV+  R+   E
Sbjct: 716 LKRISFKVLQQAKRAQRGITLLKELKKQPHRVVA-ARVCRPE 756



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 10/219 (4%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E  +L  T+ G   R  + +       N+ G   I L + D V+ +      D  
Sbjct: 496 VIVPSETVMLSLTQEGYIKRTSLRSF------NASGKEEIGLKERDGVLKIIETNTQDYA 549

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++    +  +     +   D  +  S       +  + +         E+ I+T +
Sbjct: 550 MVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K++    F+ + R+ K + A  V + + + +++ V     +  I L++ +G  + 
Sbjct: 610 RQGMIKKSLLSGFKST-RTTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLT 668

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            P++E+        G+   +   ++ VV  + I+  + +
Sbjct: 669 YPMSELLDTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707


>gi|27467955|ref|NP_764592.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|38604845|sp|Q8CSN8|PARC_STAES RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|27315500|gb|AAO04634.1|AE016747_131 topoisomerase IV subunit A [Staphylococcus epidermidis ATCC 12228]
          Length = 800

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 280/882 (31%), Positives = 465/882 (52%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E +  +     ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEVVNVY---NEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+  +DE+++V     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K  +   +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKK-KPHRIVAGAVVKENHT 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +       ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYIVFSQHHEEYGNIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 119/279 (42%), Gaps = 15/279 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKH 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E+   ++ +L+ T  G+ +  P+  +        +G    + + + + ++V++  +    
Sbjct: 541 ESVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHISQIVPIDEDEEVVN--VYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D   +            ++  +   +     K   +++    +E    ++L+   ++TV 
Sbjct: 598 DFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVL 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    VND+D II+V+ +G + 
Sbjct: 658 THKGMSLTYSTNELSDTGLRAAGVKSINLKDED---YVVMTEDVNDSDSIIMVTQRGAMK 714

Query: 864 RVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
           R+  N ++ A RA +G+ +      K  R+V+   ++E+
Sbjct: 715 RIDFNVLQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSLTQHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKHESVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  +     ++    E F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S+  F+ + R  K +    V   +E   L+ V  +  +  I +++ KG  + 
Sbjct: 610 KNGMIKKSSASQFKTT-RFNKPLINMKVKDKDE---LINVVRLESDQLITVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 666 YSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704


>gi|116670188|ref|YP_831121.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
 gi|116610297|gb|ABK03021.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
          Length = 832

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 291/854 (34%), Positives = 417/854 (48%), Gaps = 112/854 (13%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++
Sbjct: 15  QDYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPDR 74

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PAA R
Sbjct: 75  GHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL  AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 134 YTEARLAAAALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV+     +I NP+  L+ LM  + GPD PTG  I+G  GI++AYATGRGS  
Sbjct: 194 MAPHNLVEVISAARHLIANPEATLEDLMRFVPGPDLPTGGRIVGLDGIRDAYATGRGSFK 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
            R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G 
Sbjct: 254 TRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRKHGL 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L  +V  R  V
Sbjct: 314 RLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLLSVYVDHRINV 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM          
Sbjct: 374 VRRRTAFRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLMS--------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q   ILELRL +LT   R ++  E + L  EI E  
Sbjct: 425 -----------------IYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLKREIAELE 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-----------------LDMEDED 531
            IL S  RL  ++  EL  + ++  TPRRT ++E                          
Sbjct: 468 AILGSDQRLRELVSDELGEIAEKYGTPRRTVLLESEAVSPTVAALAAARGGKGKAAPLAL 527

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +     ++  G + R                        D    +   S    +  
Sbjct: 528 EIADDPCWAILTASGQIARTSNQEPLT--------ESGPRSKHDVFRSVVKTSARGEIAA 579

Query: 592 FSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNN 645
            +SLG + + +V  +P+  P       A G    + ++L +GE +    P         +
Sbjct: 580 VTSLGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKDFITLLKGETLVAFAPL--------D 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQ 704
             +   T  G V+R +      +NR     + L  +D ++ VE    ++ D++  T+  Q
Sbjct: 632 TVLAIGTAQGIVKRVQPD--YPLNREDWEVIALKDKDTVVGVEPAGADDVDLVFLTRQAQ 689

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF  + +R   GR + G+ GI L  GDQV+    V   D D           +     
Sbjct: 690 LLRFSAANVRP-QGRTAGGMAGIKLGAGDQVLFFGTVAPGDEDAVVVTVSGTEGA----- 743

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                               L  +  G GK T+  ++    R+ 
Sbjct: 744 ------------------------------------LPGTAPGAGKVTAFAEYPPKGRAT 767

Query: 825 KGIRATDVSKINEI 838
            G+RA    K  + 
Sbjct: 768 AGVRAHRFLKGEDT 781



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 35/265 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++      T  G + R   S+   +  SG         D   SV   +   +I   T LG
Sbjct: 531 DDPCWAILTASGQIART--SNQEPLTESG----PRSKHDVFRSVVKTSARGEIAAVTSLG 584

Query: 704 QCVRFPISAIRVFAG-----RNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  + V          + GV     I+L KG+ +++ A +    A        +
Sbjct: 585 RMLRLQVMDMPVLPPMSGLPNLAGGVPAKDFITLLKGETLVAFAPLDTVLA-IGTAQGIV 643

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K +     L   D E I     D+ V         +     +  ++ ++ +    R S+ 
Sbjct: 644 KRVQPDYPLNREDWEVIALKDKDTVV-------GVEPAGADDVDLVFLTRQAQLLRFSAA 696

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-----------LIR 864
           + R   R+  G+    +   +++  L        ++  ++V+  GT              
Sbjct: 697 NVRPQGRTAGGMAGIKLGAGDQV--LFFGTVAPGDEDAVVVTVSGTEGALPGTAPGAGKV 754

Query: 865 VPVNEIRIASRATKGVVIFSTAKDE 889
               E     RAT GV      K E
Sbjct: 755 TAFAEYPPKGRATAGVRAHRFLKGE 779



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 81/266 (30%), Gaps = 33/266 (12%)

Query: 650 FATKHGNVRRNKL--SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            A K+G  RR  L  S+ +    +   A +               +    + T  GQ  R
Sbjct: 487 IAEKYGTPRRTVLLESEAVSPTVAALAAARGGKGKAAPLALEIADDPCWAILTASGQIAR 546

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                    +G  S              +  ++V  +       I  +  +    RL   
Sbjct: 547 TSNQEPLTESGPRSK-----------HDVFRSVVKTS---ARGEIAAVTSLGRMLRLQVM 592

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV---------SEKGFGKRTSSYDFR 818
           D   +  +    ++ G +  +    L   E  +            + +G  KR    D+ 
Sbjct: 593 DMPVLPPMSGLPNLAGGVPAKDFITLLKGETLVAFAPLDTVLAIGTAQGIVKRVQP-DYP 651

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRAT 877
           + NR    + A       +   +V V P   +D  ++ ++ +  L+R     +R   R  
Sbjct: 652 L-NREDWEVIALK-----DKDTVVGVEPAGADDVDLVFLTRQAQLLRFSAANVRPQGRTA 705

Query: 878 KGVVIFSTAKDERVVSVERIRESEIV 903
            G+        ++V+    +   +  
Sbjct: 706 GGMAGIKLGAGDQVLFFGTVAPGDED 731


>gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 305/838 (36%), Positives = 482/838 (57%), Gaps = 40/838 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K
Sbjct: 16  DHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDK 75

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA R
Sbjct: 76  PHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +++L+ D+  DTV F  NYD S +EP  L    PN+LVNG  GIAVGMAT+
Sbjct: 136 YTEARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATS 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           IP HNL EVV    A IDN DI +D ++ + I GPDFPTGA++   + ++  Y TGRGS+
Sbjct: 196 IPPHNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSV 255

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR     E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G 
Sbjct: 256 IIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGI 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R++IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V
Sbjct: 315 RIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQISV 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +++R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ +L  +        
Sbjct: 375 IIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNK-------- 426

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 E Q +AIL++RL RL GL RD I  E+ ++   +    
Sbjct: 427 ------------------YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLD 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +++++     ++K +L  + D+    RRT  I E L+++EDE+ I     ++ +S  GY
Sbjct: 469 VLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGY 528

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++R+    +R Q+RGG+G   V     D +    +      VLFF++ G VY+ K++ + 
Sbjct: 529 IRRINPDEFRIQKRGGRGV-SVNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIR 587

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             S  ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F 
Sbjct: 588 SYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFE 645

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            INR+GK A+ L   D+++SV   T ++ + +  + G+ +R   S +   + R   GV+ 
Sbjct: 646 NINRNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNPQS-RVGGGVKA 704

Query: 727 ISLAKGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + L   D V+    +  L        +  + K      R+   + + I  +  +      
Sbjct: 705 LKLEDDDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKF 764

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +    +E  L    I+ +S  G   +T   +    +R+  G++A  ++   EI A+ 
Sbjct: 765 KAIIGARETDL----IMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTDNQEINAIT 818


>gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 979

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 307/954 (32%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKYA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               LV V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELVNVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELVNVDINFENATVILVTKNGMGIKFSATAINPMG-RVASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + I   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEGIDDK--TLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/736 (35%), Positives = 418/736 (56%), Gaps = 41/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ +    +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 673 KIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +AMK+   D ++SV     +     I L T  G  + +P+S +     R + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELPDTGLR-ATGIKAINL 689

Query: 730 AKGDQVISMAIVLHAD 745
              D V+    +   D
Sbjct: 690 KDEDHVVLADHIQTED 705



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 10/219 (4%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E  +L  T+ G   R  + +       N+ G   I L + D V+ +      D  
Sbjct: 496 VIVPSETVMLSLTQEGYIKRTSLRSF------NASGKEEIGLKERDGVLKIIETNTQDYA 549

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++    +  +     +   D  +  S       +  + +         E+ I+T +
Sbjct: 550 MVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K++    F+ + R+ K + A  V + + + +++ V     +  I L++ +G  + 
Sbjct: 610 RQGMIKKSLLSGFKST-RTTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLT 668

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            P++E+        G+   +   ++ VV  + I+  + +
Sbjct: 669 YPMSELPDTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707


>gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 452/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W    +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V+    +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVADQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 818

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/754 (36%), Positives = 411/754 (54%), Gaps = 51/754 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+++IYDAL R+AQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+  A   + + + ++TVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I  P+ DLD LM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG+  IR    ++  +  R+ ++VTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YATGRGTFKIRATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A+  L++
Sbjct: 365 VYLDHRFEVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIE 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++QT+ IL+  L RLT   R ++ +E   
Sbjct: 425 R--------------------------FALSDIQTQYILDTPLRRLTRFDRIELESEKEK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L  EI E   IL S + L  ++  EL +V  +  T RRT ++E            +  + 
Sbjct: 459 LNTEIAELTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESSGTQVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R   +        G+          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTASAEPFTADEDGR------RTKHDVIVSAVPATARGEVGAVTSTGR 572

Query: 598 VYKEKVWRLPI------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP           + G  L   L+L  GE +  +M   E     ++  +   
Sbjct: 573 LLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDE-----SSPGLAIG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         N+     + L   D I+  VE  T E D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPD--YPSNKEELEVISLKEGDRIVGAVELRTGEEDLIFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + +R   GR + G+ GI L +G +VIS   +  A
Sbjct: 686 AQVRP-QGRPAGGMAGIKLTEGAKVISFTAIDPA 718



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 27/270 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++    +  G+        D I+S    T   ++   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTASAEPFTADEDGRRTKH----DVIVSAVPATARGEVGAVTSTG 571

Query: 704 QCVRFPISAIRVFAGRNSVGVRG--------ISLAKGDQVIS-MAIVLHADADYDERICY 754
           + +R  +  +      ++             ++L  G+ ++  M +   +          
Sbjct: 572 RLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESSPGLAIGTEQG 631

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +          + +  E+ SLK    + G +      EL+  E+ ++ +++     R  +
Sbjct: 632 VVKRVVPDYPSNKEELEVISLKEGDRIVGAV------ELRTGEEDLIFITDDAQLLRYQA 685

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL--------IRVP 866
              R   R   G+    +++  ++ +  A+ P  D     +   +GTL           P
Sbjct: 686 AQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPAVDAVVFTVAGSRGTLDDSVQTTAKLTP 745

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVER 896
            ++     RAT GV      K E  +S+  
Sbjct: 746 FDQYPRKGRATGGVRCQRFLKGEDCLSIAW 775


>gi|296129539|ref|YP_003636789.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021354|gb|ADG74590.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 826

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 295/873 (33%), Positives = 430/873 (49%), Gaps = 75/873 (8%)

Query: 1   MTEHIISSD---EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M     S D   E+  + I  V +T EM+ S+L YA +VI  RA+PD RDGLKPV RRI+
Sbjct: 1   MARRPASPDLPPEDLVERIVDVDVTTEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRII 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  MG+  ++ YVK AR+ GEVMGK HPHG++AIYDA+ R+AQ +SLRL L++G GNF
Sbjct: 61  YQMADMGLRPDRPYVKSARVVGEVMGKLHPHGDSAIYDAMVRLAQPFSLRLPLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D D PAA RYTE R+  AA  +   L +D VDF PNYD   Q+P VL A  PN+LVN
Sbjct: 121 GSLD-DGPAASRYTEARMAPAAVAMTQGLDEDVVDFVPNYDNKLQQPGVLPAAIPNLLVN 179

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATN+  HNL EVV     ++ +PD  L+ LM  + GPD PTG  I+G  G+
Sbjct: 180 GATGIAVGMATNMAPHNLVEVVAAARHLVAHPDATLEDLMRFVPGPDLPTGGKIVGLDGV 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           ++AY TGRG+   R  + +E  +  R+ IVVTE+PY V    ++EKI E V+ K++  I+
Sbjct: 240 RDAYRTGRGAFRTRATARVENVTPRRKGIVVTELPYTVGPEKVIEKIKEGVQSKKLSGIS 299

Query: 298 DLRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+ D +DR  G R+VIE+K G   + +L QLYR+T L+  FSVN VAL   +P    L+ 
Sbjct: 300 DVVDLTDRQHGLRLVIEVKTGFHPEAVLEQLYRHTPLEDSFSVNNVALVDGQPRTLGLVD 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+ +V  R EVV RRT Y L K ++R H++ GL IA+ ++DEV+++IR S + +TAR  
Sbjct: 360 LLRVWVDHRLEVVRRRTSYRLTKRQERLHLVEGLLIAILDIDEVIQVIRTSDDADTARGR 419

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L                               LSE Q   ILELRL RLT   R ++  E
Sbjct: 420 LRS--------------------------VFDLSEPQAEYILELRLRRLTRFSRIELERE 453

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------------- 522
            + L  EI     IL+    L  +   E+  V     TPRRT ++E              
Sbjct: 454 RDELTDEIARLQAILADDGLLRTVTSDEMAEVAATYGTPRRTVLLEHAGGAGLAGAAGAP 513

Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                      I        +S  G + R    V     RG     G V    D V    
Sbjct: 514 TSSKGAAAPLEIPDTPCWALLSATGLLARTGEDVEPV--RGD----GTVRSRHDVVASAV 567

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMP 635
             +    +   +S G V +  V  LP   P       + G  +   ++L +GE +  ++P
Sbjct: 568 STTARADIGALTSAGRVVRLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVP 627

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
             +D        +   T  G V+R    D +  NR    A+ L   D+++       E++
Sbjct: 628 LGDDA-----PPLALGTAQGVVKRVAAGD-VPANRDAWEAISLKDGDQVVGAALARDEDE 681

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L +     + FP + +R   GR++ G+ GI LA G +V++  +V   +      +   
Sbjct: 682 LVLVSSDSSLLHFPGAQVRP-QGRSAGGMAGIKLAAGARVVAFGVVRAGEDAVVVTVSGS 740

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  +  +      ++        G +   R   LK ++  IL            + 
Sbjct: 741 SSALPGTQTGAAKVTPFSAYPGKGRATGGVRSHRF--LKGEDALILA--------HVGAS 790

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             R +   G+ +    V +  +   +    PV+
Sbjct: 791 PARATGAGGQPVELPQVDERRDGSGVPLGAPVH 823



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 72/230 (31%), Gaps = 30/230 (13%)

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +           L +  G   R       V   R    VR         V++ A+   A 
Sbjct: 521 APLEIPDTPCWALLSATGLLARTGED---VEPVRGDGTVRS-----RHDVVASAVSTTAR 572

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-- 803
           AD       +       RL   +   +       S+ G +       L+  E  +  V  
Sbjct: 573 ADIGA----LTSAGRVVRLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVPL 628

Query: 804 ----------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                     + +G  KR ++ D    NR      +       +   +V      D D++
Sbjct: 629 GDDAPPLALGTAQGVVKRVAAGDVPA-NRDAWEAISLK-----DGDQVVGAALARDEDEL 682

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +LVS   +L+  P  ++R   R+  G+     A   RVV+   +R  E  
Sbjct: 683 VLVSSDSSLLHFPGAQVRPQGRSAGGMAGIKLAAGARVVAFGVVRAGEDA 732



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 84/268 (31%), Gaps = 31/268 (11%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +       +  G + R    D   +   G +  +    D + S  + T   DI   T
Sbjct: 524 EIPDTPCWALLSATGLLART-GEDVEPVRGDGTVRSR---HDVVASAVSTTARADIGALT 579

Query: 701 KLGQCVRFPISAIRVFAGRN-----SVGVR---GISLAKGDQVISMAIVLHADADYDERI 752
             G+ VR  +  +      +     S G+     ++L KG+ V+++  +     D    +
Sbjct: 580 SAGRVVRLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVPL----GDDAPPL 635

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                    +R+ +GD           S++ +  +     L   E  ++ VS        
Sbjct: 636 ALGTAQGVVKRVAAGDVPANRDAWEAISLK-DGDQVVGAALARDEDELVLVSSDSSLLHF 694

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-----------SDKGT 861
                R   RS  G+    ++       +VA   V   +  ++V           +  G 
Sbjct: 695 PGAQVRPQGRSAGGMAGIKLAAGAR---VVAFGVVRAGEDAVVVTVSGSSSALPGTQTGA 751

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDE 889
               P +      RAT GV      K E
Sbjct: 752 AKVTPFSAYPGKGRATGGVRSHRFLKGE 779


>gi|73916850|gb|AAZ93293.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 452/884 (51%), Gaps = 83/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A      G+     RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
             G+ L   + +    E I  +      +   +       T+ G ++R +  +F      
Sbjct: 570 DIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ +
Sbjct: 627 RSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAM 684

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D       VL +    +    Y+       + +S +    TS             
Sbjct: 685 NLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------- 724

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                 KR       + N+  +   A  V++   +G   +    
Sbjct: 725 --------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVD 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 428 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 487

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 488 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 541

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 542 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 602 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 654 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|15902801|ref|NP_358351.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116515631|ref|YP_816238.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae D39]
 gi|15458351|gb|AAK99561.1| Topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116076207|gb|ABJ53927.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae D39]
          Length = 826

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 453/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R  ++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK    TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E    I+     +   +      AT+ G ++R +  +F     
Sbjct: 574 KDIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRT 630

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 631 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 689 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 729

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 730 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 768

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 769 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 98/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ ++          D     
Sbjct: 433 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATPRLSSLEDTAKAI 492

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 493 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 546

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + + ++      ++  +  
Sbjct: 547 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 606

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 607 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 659 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|313619190|gb|EFR90963.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL S4-378]
          Length = 762

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 268/740 (36%), Positives = 427/740 (57%), Gaps = 38/740 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++E   L  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F++ G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + ++ S L+ GE I +++     +S       +F TK+G  +++ ++++   
Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIAI---DSFTEQKRFLFVTKNGMTKQSAITNYKPQ 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             S  +       DE+L+V       DI L T+ G  +R+PI+ I     R + GV+ I+
Sbjct: 630 RYSKSMMAIKLKEDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKAIN 688

Query: 729 LAKGDQVISMAIVLHADADY 748
           L +GD VI   ++   D  +
Sbjct: 689 LKQGDVVIGGVVLTPNDNKH 708



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 20/240 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           S+   I +  K A + + + EI  ++         E+ I+  TK G   R    +     
Sbjct: 469 SELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSY---- 524

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
              +     +++ + D  I +  +   D+           Y               + ++
Sbjct: 525 --AASNGAELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPDIRWKNLGDHVS 582

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L +D S    I      +   +++  L V++ G  K+++  +++   R  K + A  + 
Sbjct: 583 HLASDLSAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIKLK 641

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +      L+ V+ ++  + I L +  G  +R P+ EI  +   T GV   +  + + V+ 
Sbjct: 642 EDE----LLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLKQGDVVIG 697



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 97/245 (39%), Gaps = 11/245 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK G V+R     +   N +          D  + ++     + +LL T  G
Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASNGAELAM---KEADHAIFIQKMNSLDSLLLFTNKG 559

Query: 704 QCVRFPISAIRVFAGRNSVGVR----GISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
             +  P+  +       ++G         L+ G+++ S+  +        +R  ++    
Sbjct: 560 NFIYRPVHEL-PDIRWKNLGDHVSHLASDLSAGEEIRSVIAIDSF--TEQKRFLFVTKNG 616

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
             ++    + +     K+  +++    E     L    + I   +  G+G R    +   
Sbjct: 617 MTKQSAITNYKPQRYSKSMMAIKLKEDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPE 676

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           S     G++A ++ + + +   V + P NDN  I+L + +G+L ++  +E    SRA +G
Sbjct: 677 SGARTAGVKAINLKQGDVVIGGVVLTP-NDNKHILLATQRGSLKQMKASEFEPISRAKRG 735

Query: 880 VVIFS 884
           +++  
Sbjct: 736 LLMLR 740


>gi|300361707|ref|ZP_07057884.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300354326|gb|EFJ70197.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 826

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/890 (31%), Positives = 447/890 (50%), Gaps = 93/890 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 6   ERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE 
Sbjct: 66  AAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTES 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 126 RLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V ++ +PD   D LME ++GPDFPTG ++LG  GIK AY TGRG I +R  
Sbjct: 186 NLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I+   G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIE
Sbjct: 246 TTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  +++VV +RT
Sbjct: 306 LKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVTKRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A+  L+ +             
Sbjct: 366 EFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKNAKNNLIAK------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +  Q  AI+ L+L RLT    + ++ E   L  +I +  +ILS 
Sbjct: 413 -------------YKFTPNQAEAIVSLQLYRLTNTDVNQLKKEQTELNKKIDKFNEILSD 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR 
Sbjct: 460 NKVLEKVVVKELNAVKKEFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRS 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +++      G     + D D V     +ST  ++  F++ G +    V  L     
Sbjct: 520 SIRSFQSTDTSDNG-----LPDGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKW 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L+  E I  +    + ++S N    + AT  G +++  L+D       
Sbjct: 575 KETGQHLSQEIGLDNDEEIIRVFEINDLKASLN---FLIATNDGYIKQVTLADLQPTRTY 631

Query: 670 -RSGKIAMKLDSRD-EILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 A+KL  +D +++ ++    +   +I L T     VRF IS I   +G  +VGV+
Sbjct: 632 KSRAITAIKLKCKDSKVVRIDQVKPDSKQEITLITNQAYAVRFDISEI-PTSGSKAVGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +++  +      D                                      
Sbjct: 691 SVNLKDNDYIVNYVLADPKYVDLIN----------------------------------- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I  ++++G  K+          R+ +G+      K  +   ++A+ 
Sbjct: 716 --------------IGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELKT-KPHRIMAIS 760

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              +N  + L +     I +  +E  +  R + G  +     D   +S+ 
Sbjct: 761 SYGENHILHLTTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPISLT 810


>gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124]
 gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens ATCC 13124]
 gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
          Length = 979

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 307/954 (32%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKLPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDEIIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               LV V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELVNVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFLATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEDIDD 915



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDEIIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELVNVDINFENATVILVTKNGMGIKFLATAINPMG-RVASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + I   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEDIDDK--TLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 812

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 290/890 (32%), Positives = 460/890 (51%), Gaps = 98/890 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I S+++ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+QDW +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +PD  LD LM+ ++GPDFPTGA++ G  GIK AY TG G I++R  
Sbjct: 182 NLGEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGHGKIIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIV+TEIPY+VNKA ++++I E+   K+I  I+++RD+SDR G  +V+E
Sbjct: 242 TSIEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL A++ F++EV+ +RT
Sbjct: 302 LKRDVDSKGILNYLFKNTDLQVSYNFNMVAISHMRPERLSLKKILVAYLEFQQEVIEKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KY L KA+DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 KYNLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q  AI+ L+L RLT     ++ NE   L  EI +   IL+S
Sbjct: 408 ------------TYDFSEKQADAIVALQLYRLTNTDVTELENEHQHLADEITKDNKILNS 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
              L  ++  EL ++     + RRT I   + D++      I  ED++V VSH GY+KR 
Sbjct: 456 PKELNRVLANELRALAKTYRSARRTEIQAEVSDIKINTDVLIPDEDVIVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A        +   ++DED+   +  ++    +  F++ G +    V+ L     
Sbjct: 516 SIRSYKAST------TDTGLKDEDYPIFMAELNARDHLFMFTNKGNLIYRPVFELADVKW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ +   + L+  E I     F   +S       + AT  G+V++   +D       
Sbjct: 570 KDTGEHISQTIGLDADEEIIGTYAF---DSLKQPGTFLIATDQGHVKQTGFADMKPGRTY 626

Query: 670 -RSGKIAMKLDSRDEILSV----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                   KL + DE +      +T      +LL +  G  +R+ I  + V   R + GV
Sbjct: 627 KSHAYTYEKLKTADERVVAIHYLKTPATAGQMLLISNNGLALRYGIDEVPVNGAR-TTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L   D+V ++ +V   D                                       
Sbjct: 686 KSMGLRGVDKVTNLQLVSEDDV-------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  V+++G  K+ +  +   ++R+ KG+      K N    +   
Sbjct: 708 ---------------LAIVTQRGSFKKLAVKEIPATSRARKGVMILRELKNNPHRIVDFC 752

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +++  + + +D   +  +   +  +  R + G  +     +   VS+
Sbjct: 753 RIESEDQPLEVRTDHRRVHDILPADYSLGGRYSNGSFVIDVDSEGTPVSI 802



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 14/221 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E+ I++ +  G   R  I + +              L   D  I MA +   D  
Sbjct: 495 VLIPDEDVIVMVSHDGYIKRSSIRSYKASTTDTG-------LKDEDYPIFMAELNARDHL 547

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++     + +     +   DT E  S       +  I      +   +    L  +
Sbjct: 548 FMFTNKGNLIYRPVFELADVKWKDTGEHISQTIGLDADEEIIGTYAFDSLKQPGTFLIAT 607

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGT 861
           ++G  K+T   D +   R+ K    T          +VA+  +       Q++L+S+ G 
Sbjct: 608 DQGHVKQTGFADMKP-GRTYKSHAYTYEKLKTADERVVAIHYLKTPATAGQMLLISNNGL 666

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +R  ++E+ +    T GV        ++V +++ + E ++
Sbjct: 667 ALRYGIDEVPVNGARTTGVKSMGLRGVDKVTNLQLVSEDDV 707


>gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 819

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 286/813 (35%), Positives = 417/813 (51%), Gaps = 54/813 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M 
Sbjct: 5   STKTPPPDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMG 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VKCAR+ GEVMGK HPHG+A+IYDA+ RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGFVKCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTE R+  AA  + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G +GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGGRIVGLSGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGS  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YESGRGSFKIRATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVK 304

Query: 301 DESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR    R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRNHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  LM+
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+QT+ IL+  L RLT   R ++  E N 
Sbjct: 425 R--------------------------FSLSEIQTQYILDTPLRRLTKFDRIELETEQNR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L  EI E   IL S + L  ++  EL +V  +  T RRT ++E            +  + 
Sbjct: 459 LNGEIDELTGILESDAELRKLVSAELAAVAKKFATDRRTVLLESAGAPVAAVSLEVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R   +                    D +      +    +   +S G 
Sbjct: 519 CRVLLSSTGLLARTATAELPP------VDPDAARAKHDVILSSVAATQRGDIGAVTSGGR 572

Query: 598 VYKEKVWRLPI------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP           A G  L   LSL   E +  +    E      +  +   
Sbjct: 573 LLRIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCLTTLDE-----ASPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R         N+     + L   D I+   E  T + D++  T   Q +R+P 
Sbjct: 628 TLQGVVKRVVPD--YPANKDELEVITLKDGDRIVGATELRTGDEDLVFITSDAQLLRYPA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + G+ G+ L+ G  VIS   V   D   D  +  +   +      +  + 
Sbjct: 686 AQVRP-QGRPAGGMAGVKLSAGADVISFTAV---DPAADAVVFTVAGSTGTLDGSAATSA 741

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
           ++T               RCQ     E  +L  
Sbjct: 742 KLTPFDQYPRKGRATGGVRCQRFLKGEDVLLLA 774



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 85/274 (31%), Gaps = 35/274 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++   ++     A +      + SV    + + I   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTATAELPPVDPD---AARAKHDVILSSVAATQRGD-IGAVTSGG 571

Query: 704 QCVRFPISAIRVFAGRNSVGVRG--------ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +       S             +SL   + V+ +  +  A           
Sbjct: 572 RLLRIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCLTTLDEASPGLALGTLQG 631

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT    D  V          EL+  ++ ++ ++      R  
Sbjct: 632 VVKRVVPDYPANKDELEVITLKDGDRIVGAT-------ELRTGDEDLVFITSDAQLLRYP 684

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL----------- 862
           +   R   R   G+    +S       +++   V+     ++ +  G+            
Sbjct: 685 AAQVRPQGRPAGGMAGVKLSAG---ADVISFTAVDPAADAVVFTVAGSTGTLDGSAATSA 741

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              P ++     RAT GV      K E V+ +  
Sbjct: 742 KLTPFDQYPRKGRATGGVRCQRFLKGEDVLLLAW 775



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 23/229 (10%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +   + +V     ++    L +  G   R   + +       +        AK D ++S
Sbjct: 502 SAGAPVAAVSLEVADDPCRVLLSSTGLLARTATAELPPVDPDAAR-------AKHDVILS 554

Query: 738 -MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE---- 792
            +A     D         +  ++        DT    +L   + +   +S E  +     
Sbjct: 555 SVAATQRGDIGAVTSGGRLLRIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCL 614

Query: 793 --LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L      +   + +G  KR    D+     +   +    +   +    +V    +   
Sbjct: 615 TTLDEASPGLALGTLQGVVKRV-VPDYPA---NKDELEVITLKDGDR---IVGATELRTG 667

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D+ ++ ++    L+R P  ++R   R   G+     +    V+S   + 
Sbjct: 668 DEDLVFITSDAQLLRYPAAQVRPQGRPAGGMAGVKLSAGADVISFTAVD 716


>gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 803

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/736 (35%), Positives = 418/736 (56%), Gaps = 41/736 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR + I E + +++ +    +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G+  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNAS-----GKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 673 KIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +AMK+   D ++SV     +     I L T  G  + +P+S +     R + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELPDTGLR-ATGIKAINL 689

Query: 730 AKGDQVISMAIVLHAD 745
              D V+    +   D
Sbjct: 690 KDEDHVVLADHIQTED 705



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 106/282 (37%), Gaps = 16/282 (5%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I+ I    ++    +   ++  T+ G ++R  L      N SGK  + L  RD +L 
Sbjct: 484 EEKISEI-KIDKEVIVPSETVMLSLTQEGYIKRTSL---RSFNASGKEEIGLKERDGVLK 539

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHA 744
           +     ++  ++ T  G+ +  P+  +        +G  V  I   + D+ +     +  
Sbjct: 540 IIETNTQDYAMVFTNKGRYLLIPVHKL-PDVKWKDLGQHVSQIVPIEEDERVVDCYTVSE 598

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFIL 801
             D    I   +    ++ L+SG     T+             +            Q I 
Sbjct: 599 FNDERAIITATRQGMIKKSLLSGFKSTRTTKPLVAMKVKESDALISVMLVPADASSQLIT 658

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            ++ +G        +   +     GI+A ++   +    +V    +   D I++ + +G 
Sbjct: 659 LLTHRGMSLTYPMSELPDTGLRATGIKAINLKDED---HVVLADHIQTEDTILIATQRGA 715

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
           L R+    ++ A RA +G+ +    K +  RVV+  R+   E
Sbjct: 716 LKRISFKVLQQAKRAQRGITLLKELKKQPHRVVA-ARVCRPE 756



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 83/219 (37%), Gaps = 10/219 (4%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E  +L  T+ G   R  + +       N+ G   I L + D V+ +      D  
Sbjct: 496 VIVPSETVMLSLTQEGYIKRTSLRSF------NASGKEEIGLKERDGVLKIIETNTQDYA 549

Query: 746 -ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++    +  +     +   D  +  S       +  + +         E+ I+T +
Sbjct: 550 MVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  K++    F+ + R+ K + A  V + + + +++ V     +  I L++ +G  + 
Sbjct: 610 RQGMIKKSLLSGFKST-RTTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLT 668

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            P++E+        G+   +   ++ VV  + I+  + +
Sbjct: 669 YPMSELPDTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707


>gi|73916874|gb|AAZ93305.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916924|gb|AAZ93330.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 454/885 (51%), Gaps = 84/885 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIE 313
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  I A++RDESDR G R+ IE
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAAEVRDESDRDGLRIAIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 301 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 361 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 404

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 405 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 455 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 515 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 569

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F     
Sbjct: 570 KDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 627 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 685 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 725

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 726 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 764

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 809



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 429 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 488

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 489 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 542

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 543 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 602

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 603 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 654

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 655 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 695


>gi|57866862|ref|YP_188505.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis RP62A]
 gi|251810788|ref|ZP_04825261.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876209|ref|ZP_06285076.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|293366679|ref|ZP_06613355.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674759|sp|Q5HPI5|PARC_STAEQ RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|57637520|gb|AAW54308.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis RP62A]
 gi|251805716|gb|EES58373.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295234|gb|EFA87761.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|291318980|gb|EFE59350.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735889|gb|EGG72168.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU028]
          Length = 800

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 279/882 (31%), Positives = 465/882 (52%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E +  +     ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEVVNVY---NEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+  +DE+++V     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K  +   +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKK-KPHRIVAGAVVKENHT 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +       ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYIVFSQHHEEYGNIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 119/279 (42%), Gaps = 15/279 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKH 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E+   ++ +L+ T  G+ +  P+  +        +G    + + + + ++V++  +    
Sbjct: 541 ESVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHISQIVPIDEDEEVVN--VYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D   +            ++  +   +     K   +++    +E    ++L+   ++TV 
Sbjct: 598 DFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVL 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    VND+D II+V+ +G + 
Sbjct: 658 THKGMSLTYSTNELSDTGLRAAGVKSINLKDED---YVVMTEDVNDSDSIIMVTQRGAMK 714

Query: 864 RVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
           R+  N ++ A RA +G+ +      K  R+V+   ++E+
Sbjct: 715 RIDFNVLQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSLTQHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKHESVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  +     ++    E F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S+  F+ + R  K +    V   +E   L+ V  +  +  I +++ KG  + 
Sbjct: 610 KNGMIKKSSASQFKTT-RFNKPLINMKVKDKDE---LINVVRLESDQLITVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 666 YSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704


>gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 817

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 297/813 (36%), Positives = 429/813 (52%), Gaps = 55/813 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
              + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+  D P
Sbjct: 68  RPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A+  + + + ++TVDF PNYDGS QEPV L A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I +P  DLD LM  + GPD PTG  I+G +G+++AY TG
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIVGMSGVRDAYETG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLTD 307

Query: 305 RQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+   R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 REHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+R L+QR   
Sbjct: 368 HRFNVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQR--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FGLSEVQTQYILDTPLRRLTKFDRLELESERDRLNTE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I+E   IL S + L  ++  EL +V  +  TPRRT ++E            +  +   V 
Sbjct: 462 IEELTRILDSDAELRKLVSGELAAVAKKFGTPRRTVLLESSNAPVTAVPLEVADDPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R             K          D +      +   SV   +S G + + 
Sbjct: 522 LSSTGLLARTADGEPFPVEGKAK------RAKHDVILSAVPATARGSVGAVTSTGRLLRL 575

Query: 602 KVWRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP+     G P  A G  +   LSL +GE +  +    E     ++  +   T+ G
Sbjct: 576 TVIDLPMLPESAGPPNLAGGAPIAEFLSLEEGEELICLTTLDE-----SSPGLAIGTEQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R         N+     + L   D I+  VE  T E D++  T   Q +R+  S +R
Sbjct: 631 VVKRVVPD--YPANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYAASQVR 688

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + G+ G+ LA G +VIS   V  A       I             S        
Sbjct: 689 P-QGRAAGGMAGVKLASGAKVISFTAVDPASDAVVFTIAGSSGTLDDSVQQSAKLTPFDQ 747

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                   G +   R     LK + IL ++  G
Sbjct: 748 YPRKGRATGGVRCHRF----LKGEDILVLAWAG 776



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 103/303 (33%), Gaps = 32/303 (10%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G     +L  +    +T + P        ++   V  +  G + R    +   +  
Sbjct: 487 AKKFGTPRRTVLLESSNAPVTAV-PL----EVADDPCRVLLSSTGLLARTADGEPFPVEG 541

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA----GRNSVGVRG 726
             K A      D ILS    T    +   T  G+ +R  +  + +        N  G   
Sbjct: 542 KAKRAKH----DVILSAVPATARGSVGAVTSTGRLLRLTVIDLPMLPESAGPPNLAGGAP 597

Query: 727 I----SLAKGDQVISMAIVLHADADYD-ERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           I    SL +G+++I +  +  +           +          + D  E+  LK    +
Sbjct: 598 IAEFLSLEEGEELICLTTLDESSPGLAIGTEQGVVKRVVPDYPANKDELEVIGLKEGDRI 657

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            G +      EL+  E+ ++ +++     R ++   R   R+  G+    ++   ++ + 
Sbjct: 658 VGAV------ELRTGEEDLVFITDDAQLLRYAASQVRPQGRAAGGMAGVKLASGAKVISF 711

Query: 842 VAVFPVNDNDQIILVSDKGTL--------IRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            AV P +D     +    GTL           P ++     RAT GV      K E ++ 
Sbjct: 712 TAVDPASDAVVFTIAGSSGTLDDSVQQSAKLTPFDQYPRKGRATGGVRCHRFLKGEDILV 771

Query: 894 VER 896
           +  
Sbjct: 772 LAW 774


>gi|309812888|ref|ZP_07706620.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
 gi|308433166|gb|EFP57066.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
          Length = 866

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 291/841 (34%), Positives = 415/841 (49%), Gaps = 73/841 (8%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     DE+  + I  + + DEM+ ++L Y+ +VI  RA+PD RDGLKPV RRILF M 
Sbjct: 4   TKKPEMPDEDIVENIIDIDVEDEMRAAFLEYSYSVIYSRALPDARDGLKPVQRRILFSMD 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  NK +VK +R+ GEVMGKYHPHG++AIYD L RMAQD+++RL LI+G GNFGS+D
Sbjct: 64  ELGLTPNKNHVKSSRVVGEVMGKYHPHGDSAIYDTLVRMAQDFTMRLPLIDGHGNFGSLD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
             P A+ RYTE RL  A+  L+  L ++TVDF PNYD S Q+P VL A +PN+LVNG  G
Sbjct: 124 QGPAAS-RYTEARLAPASLTLVAGLDENTVDFVPNYDDSLQQPSVLPAAFPNLLVNGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNLGEVV   V +I NPD  LD LM  + GPD P G  I+G  GI++AY
Sbjct: 183 IAVGMATNMAPHNLGEVVQAAVHLIKNPDCSLDDLMRFVPGPDLPMGGRIIGLDGIRDAY 242

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG+   R  + IE  +  R+ IVVTE+PY V    +++K+ +LV +K++  ++D++D
Sbjct: 243 LTGRGTFRTRATATIENVTPRRKGIVVTELPYLVGPEKVIDKMKDLVGQKKLHGVSDVKD 302

Query: 302 ESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            SDR    R+VIELK G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ 
Sbjct: 303 LSDRHHGLRLVIELKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPRTLGLKELLRV 362

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +  FR +VV RRT + L K  DR H++ GL IA+ ++DEV++IIR S +  TAR  LMQ 
Sbjct: 363 YTDFRIDVVRRRTTHRLGKKEDRLHLVDGLLIAILDIDEVIQIIRSSDDSATARARLMQ- 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q   IL+L+L RLT   R ++  E + L
Sbjct: 422 -------------------------VFDLSEAQATYILDLQLRRLTKFSRLELEKEADEL 456

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------LLDMEDED 531
             EI++   IL+    L  ++  ELL+V  E  TPRRT ++EG                 
Sbjct: 457 RAEIEKLRAILADVKLLHKVVCDELLAVAKEFGTPRRTVLLEGNGTQAVAKTASKSSMPL 516

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +   V +S  G + R   +   +   G         R  D V      S       
Sbjct: 517 EIPDDPCWVLLSSTGLIARTTSADLLSTDGG--------RRKHDVVLAAARTSARGEFGV 568

Query: 592 FSSLGFVYKEKVWRLPI------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
            +S G +++     LP             G  +   + L  GE++ T+     D     +
Sbjct: 569 VTSAGRLFRVSALELPHLVDTHAAPVLDGGAPVAAFVDLAPGEKVLTVTSLRAD-----S 623

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQ 704
             +   T  G V+R         N+     + L   D ++  VE  T   ++   T   Q
Sbjct: 624 PGLALGTAAGVVKRVTTE---YANKPIMEVITLKGDDVVVGAVELQTGTEELTFVTNEAQ 680

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD---------ADYDERICYM 755
            + F  + +R   GR   GV GI L  G + I    V                +  I  +
Sbjct: 681 LLHFNAANVRP-QGRTGGGVAGIKLGAGARAIFFGSVSRDGIVVTGAGHPGSPNGEITSL 739

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K          G              E +++      +          S K  GK  +  
Sbjct: 740 KVAPFTEFPAKGRATAGVRAHRFLRGENHLT---FAWVGSAPARAADASGKAIGKLLTLD 796

Query: 816 D 816
           D
Sbjct: 797 D 797



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 89/275 (32%), Gaps = 35/275 (12%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              ++   V  +  G + R   +D +  +            D +L+    +   +  + T
Sbjct: 517 EIPDDPCWVLLSSTGLIARTTSADLLSTD------GGRRKHDVVLAAARTSARGEFGVVT 570

Query: 701 KLGQCVRFPISAIRVFAGRNSVGV--------RGISLAKGDQVISMAIVLHADADYDERI 752
             G+  R     +      ++  V          + LA G++V+++  +           
Sbjct: 571 SAGRLFRVSALELPHLVDTHAAPVLDGGAPVAAFVDLAPGEKVLTVTSLRADSPGLALGT 630

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                        +    E+ +LK D  V G +      EL+   + +  V+ +      
Sbjct: 631 AAGVVKRVTTEYANKPIMEVITLKGDDVVVGAV------ELQTGTEELTFVTNEAQLLHF 684

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD-------KGTLIRV 865
           ++ + R   R+G G+    +          A+F  + +   I+V+         G +  +
Sbjct: 685 NAANVRPQGRTGGGVAGIKLGAGAR-----AIFFGSVSRDGIVVTGAGHPGSPNGEITSL 739

Query: 866 PVN---EIRIASRATKGVVIFSTAKDERVVSVERI 897
            V    E     RAT GV      + E  ++   +
Sbjct: 740 KVAPFTEFPAKGRATAGVRAHRFLRGENHLTFAWV 774


>gi|220912389|ref|YP_002487698.1| DNA topoisomerase IV subunit A [Arthrobacter chlorophenolicus A6]
 gi|219859267|gb|ACL39609.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 836

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 293/857 (34%), Positives = 416/857 (48%), Gaps = 111/857 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++      + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+
Sbjct: 10  VADTTPFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGL 69

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR+ GEVMGK HPHG+AAIYDA+ RMAQD+SLRL LI+G GNFGS+D D P
Sbjct: 70  RPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGP 128

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA  L + L +D VDF PNYD    +P VL A +PN+LVNG  GIAVG
Sbjct: 129 AAPRYTEARLAPAALTLTNHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVG 188

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNL EV+     +I NPD  L+ LM  + GPD P+G  I+G  GI++AYATGR
Sbjct: 189 MATNMAPHNLVEVISAARHLIANPDATLEDLMRFVPGPDLPSGGRIVGLDGIRDAYATGR 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR
Sbjct: 249 GSFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDR 308

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIELK G +   +L QLYRYT ++  F +N V L   +P+   L+ +L  +V  
Sbjct: 309 KHGLRLVIELKNGFNPTAVLQQLYRYTPMEDSFGINNVTLVDGQPQTLGLVALLSVYVNH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM      
Sbjct: 369 RIDVVRRRTIFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARERLMS----- 423

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E+Q   ILELRL +LT   R ++  E + L  EI
Sbjct: 424 ---------------------IYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLRREI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL----------------LDME 528
            E   IL+S   L  ++  EL ++ +E  TPRRT ++E                      
Sbjct: 463 AELEAILNSEELLRSLVSDELEAISEEHGTPRRTILLESEAVSPTVAAELAGSKKGKPAP 522

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
               I  +     ++  G + R       A                D  T +   S    
Sbjct: 523 LALEIADDPCWAILTASGQIGRTSNQEPLA--------EAGPRNKHDVFTSVVKTSARGE 574

Query: 589 VLFFSSLGFVYKEKVWRLPIGSP------QARGKALINILSLNQGERITTIMPFPEDESS 642
           +   +S G + + +V  +P+  P       A G    + L+L +GE +    P  E    
Sbjct: 575 IAAITSQGRMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFAPLDE---- 630

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTK 701
                +   T  G V+R +      +NR     + L  +D ++ V     ++  ++  T 
Sbjct: 631 ----VLAIGTSQGVVKRVQPE--YPLNREDWEVIALKDKDFVVGVAPAAADDTELVFLTA 684

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             Q ++F  SA+R   GR + G+ GI LA GD+V     V   D                
Sbjct: 685 QAQLLKFAASAVRP-QGRTAGGMAGIKLAAGDRVAFFGAVRDQD---------------- 727

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                    E             L  +  G  K T+  ++ +  
Sbjct: 728 -------------------------EAAVVVTIAGTNGALPGTAPGTAKVTAFSEYPVKG 762

Query: 822 RSGKGIRATDVSKINEI 838
           R+  G+RA    K  + 
Sbjct: 763 RATAGVRAHRFLKGEDT 779



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 45/270 (16%)

Query: 644 NNLYVVFATKHGNVRRN----KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           ++      T  G + R      L++    N+           D   SV   +   +I   
Sbjct: 529 DDPCWAILTASGQIGRTSNQEPLAEAGPRNKH----------DVFTSVVKTSARGEIAAI 578

Query: 700 TKLGQCVRFPISAIRVFAG-----RNSVGVRG---ISLAKGDQVISMAIVLHADADYDER 751
           T  G+ +R  +  + V          + GV     ++L KG+ +++ A +    A    +
Sbjct: 579 TSQGRMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFAPLDEVLAIGTSQ 638

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               +        ++ +  E+ +LK+   V G             +  ++ ++ +    +
Sbjct: 639 GVVKRVQPEYP--LNREDWEVIALKDKDFVVGVAPA------AADDTELVFLTAQAQLLK 690

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV------------SDK 859
            ++   R   R+  G+    ++  +    +     V D D+  +V            +  
Sbjct: 691 FAASAVRPQGRTAGGMAGIKLAAGDR---VAFFGAVRDQDEAAVVVTIAGTNGALPGTAP 747

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           GT      +E  +  RAT GV      K E
Sbjct: 748 GTAKVTAFSEYPVKGRATAGVRAHRFLKGE 777



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 69/221 (31%), Gaps = 19/221 (8%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV--RGISLAKGDQVISMAIVLH 743
                 +    + T  GQ  R         A  RN   V    +  +   ++ ++     
Sbjct: 524 ALEIADDPCWAILTASGQIGRTSNQEPLAEAGPRNKHDVFTSVVKTSARGEIAAI----- 578

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R+  ++ M             +            +  E        ++ +   
Sbjct: 579 ---TSQGRMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFAPLDEVLAIG 635

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           + +G  KR    ++ + NR    + A       +   +V V P   +D +++ ++ +  L
Sbjct: 636 TSQGVVKRVQP-EYPL-NREDWEVIALK-----DKDFVVGVAPAAADDTELVFLTAQAQL 688

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++   + +R   R   G+     A  +RV     +R+ +  
Sbjct: 689 LKFAASAVRPQGRTAGGMAGIKLAAGDRVAFFGAVRDQDEA 729


>gi|15672966|ref|NP_267140.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491485|ref|YP_003353465.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|12723927|gb|AAK05082.1|AE006332_11 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375203|gb|ADA64716.1| Topoisomerase IV, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 824

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/890 (30%), Positives = 460/890 (51%), Gaps = 79/890 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+V+R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIVKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +   ++E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G+     RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQ 667
           +  G+ L   L + +  E++  +    E         ++  T++G ++   R   S +  
Sbjct: 571 KDIGEHLSQSLSNFSADEKVIFVQIVDEFAGEN----LLVVTRNGQIKQIERESFSPWRT 626

Query: 668 INRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                    KL    DEI+ +      + ++L ++ G  +RF +  + V   R + GV+ 
Sbjct: 627 YRSKSTPYAKLKGEDDEIVLITPVQFAD-LMLISENGYALRFNLDDVPVLGAR-AAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L  GD++ S   V         +  ++K               + +    ++   N  
Sbjct: 685 MNLKNGDKIKSAFFVNSNSWYLLTQRAFIKR--------------VKTDDIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVS-EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +  + LK     +            ++  +                 +++      A  
Sbjct: 731 LQVLRTLKTNNHTVFAAGLINSTADLSALTE-----------------ELDLFSQAKAPA 773

Query: 846 PVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 774 TKETDEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101]
 gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens SM101]
          Length = 979

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 307/954 (32%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVLK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               LV V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELVNVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFLATAINPMGRIASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELVNVDINFENATVILVTKNGMGIKFLATAINPMG-RIASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + +   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEGIDDK--TLEAYNDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
 gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
          Length = 800

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/887 (31%), Positives = 464/887 (52%), Gaps = 100/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TV F  NYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNP+I +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+VVTE+PY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 TEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVVV RTK+
Sbjct: 305 KEANSEAIKNYLFKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVVNRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVA---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   ++ Q  AI+ L+L RLT     +++NE   L   IKE   IL +  
Sbjct: 409 ----------TYGFTDAQAEAIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I   + +  ++ E  +  ED++++V+  GY+KR   
Sbjct: 459 ALLTVIKNELKDIRKRFKSERLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G S + ++  D +     V+T  ++L F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  ++++ + E I   +    +++     + + AT++G ++++    F     +  
Sbjct: 574 LGQHVSQLVAIEEDEYI---INVYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +AMK+  +DEI+SV+  T++  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LVAMKVKPQDEIISVQRLTEDQIITVLTHKGMSLTYNTNELSDTGLR-AAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V                                                   
Sbjct: 690 DFVVMTEVV--------------------------------------------------- 698

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q I+  +++G  KR      +++ R+ +GI      K N    +       +  +
Sbjct: 699 --EAGQTIIMATQRGAIKRIDFKVLQLAKRAQRGITLLKELKKNPHRIVAGHVVTENQSE 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            I+ S+     G ++     +I  + + T G  I  T +   V+++ 
Sbjct: 757 YIIYSESHVEEGLIV-----DIHKSEQYTNGSFIVDTTEFGEVINMT 798



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 95/248 (38%), Gaps = 26/248 (10%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-----CTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++   I +  K         EI  ++         E+ I+  T  G   R    +     
Sbjct: 466 NELKDIRKRFKSERLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSF---- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYM---KHMSAQRRLISGDTE 770
             N+ GV  I L +GD+++    V   D         R  ++   K    + + +     
Sbjct: 522 --NASGVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVS 579

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           ++ +++ D  +    +E+  Q+    E F +  +  G  K++ +  F+ + R  K + A 
Sbjct: 580 QLVAIEEDEYIINVYNEKNFQQ----EAFYIMATRNGMIKKSHAGLFKTT-RYTKPLVAM 634

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V   +E   +++V  + ++  I +++ KG  +    NE+        GV   +   ++ 
Sbjct: 635 KVKPQDE---IISVQRLTEDQIITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLKVEDF 691

Query: 891 VVSVERIR 898
           VV  E + 
Sbjct: 692 VVMTEVVE 699


>gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 798

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 454/883 (51%), Gaps = 97/883 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RVVI
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRVVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+              
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q+ AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 412 --------------FSFTEAQSEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I +    L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--- 667
            +  G+ L   + L   E +     F   E+   ++  + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLENDEYVLNAFVF---ENIDQDVKFLIATKEGYIKQVKLADLKPGRT 629

Query: 668 -INRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              R+ +        DE++SV     +   +   +  G  +R+ +  +       + GV+
Sbjct: 630 YKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGA-LAAGVK 688

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + ++ +V  +D                                        
Sbjct: 689 CMDLR-DDTLANVILVSESD---------------------------------------- 707

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +  ++++G  K+    D  ++ R+ +G++     K  +   ++   
Sbjct: 708 -------------EVSIITQRGSYKKMKVADVPLTTRARRGVQILRELKT-KPHRIIFTE 753

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            V  N +++L+   G    V   + ++  R + G  +     D
Sbjct: 754 LVQTNQELVLLLSDGKQETVKPEDHQLNDRYSNGSFVVDAETD 796



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 83/220 (37%), Gaps = 12/220 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHA 744
               QE+ +LL +  G   R  + +    +  +  G++         V+   S   +   
Sbjct: 498 VMVAQEDVMLLVSHDGYVKRSSLRSFNA-SDNDENGLKDEDYPILQSVVNTLSHLFIFTN 556

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             +   R  +    S  +      ++ +    ++  +   + E   Q++K      L  +
Sbjct: 557 KGNLIYRPIHEVIESRWKDTGEHLSQTVGLENDEYVLNAFVFENIDQDVK-----FLIAT 611

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLI 863
           ++G+ K+    D +   R+ K   +  +    ++  +++V  V  D  Q+   S  G  +
Sbjct: 612 KEGYIKQVKLADLKP-GRTYKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGL 670

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R  ++E+        GV      +D+ + +V  + ES+ V
Sbjct: 671 RYSLDEVPTNGALAAGVKCMDL-RDDTLANVILVSESDEV 709


>gi|84496203|ref|ZP_00995057.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382971|gb|EAP98852.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 816

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 282/848 (33%), Positives = 420/848 (49%), Gaps = 97/848 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T +  + D+E    +  + +  EMQN++L Y+++VI  RA+PD+RDGLKPV RRILF M 
Sbjct: 6   TSNPQADDDENNGHVVDIDVGIEMQNAFLEYSVSVIHSRALPDVRDGLKPVQRRILFSMS 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VK +R+ G+VMGKYHPHG+ AIYDAL RMAQ +++RL L++G GNFGS+D
Sbjct: 66  EMGLRPDRGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +   L +DTVDF PNYD    +P VL A YPN+LVNG  G
Sbjct: 126 -DGPAASRYTEARLAPAALVMTTGLDEDTVDFVPNYDDQLLQPGVLPAAYPNLLVNGVSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG AT++P HNL EV+     +I +PD  LD LM+ + GPD P G  I+G  GI++AY
Sbjct: 185 IAVGFATSMPPHNLVEVISAARHLIAHPDCSLDDLMKFVPGPDLPLGGKIVGLDGIRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG+G+   R  + IEK +  +  IVVTE+PY V    ++E++  LV+ K++  I+D++D
Sbjct: 245 LTGKGTFKTRATTRIEKLTPRKSGIVVTELPYLVGPEKVIERMKTLVQGKKLQGISDVKD 304

Query: 302 ESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G + + +L QL++ T ++  F +N VAL   +P+   L  +L+ 
Sbjct: 305 LTDRKHGLRMVIEVKNGFNPEAVLEQLFKLTPMEDSFGINNVALVDGQPQTLGLKDLLRH 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V FR  VV RRT Y L KA+D+ H+++GL IA+ ++DEV+++IR S +  TAR+ L   
Sbjct: 365 YVEFRILVVRRRTAYRLRKAQDQLHLVLGLLIAILDIDEVIQLIRTSDDTATARQRLRD- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q   ILEL+L RLT   R ++ N+ + L
Sbjct: 424 -------------------------VFDLSELQANYILELQLRRLTKFSRLELENQRDEL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVRED 537
             +I+E   IL     L  ++  EL  V  +  TPRRT ++E   +         +  + 
Sbjct: 459 EKQIQELEAILGDEKLLQRMVSTELADVAKKYGTPRRTVLLESAGNPVSAAAPLEVSDDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A+    +G         D V      +    V   +S G 
Sbjct: 519 CWVLLSSTGLLARTS----NAEPIPAEGPRAK----HDAVISAVRTTARGEVGLVTSRGR 570

Query: 598 VYKEKVWRLP------IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +     LP           + G  L   + L +GE   T++    D        +   
Sbjct: 571 MIRISALELPTLPPLGGAPSLSGGAPLAAYVDLPRGEEPITVVSLDPD-----GPGLALG 625

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R       Q        + L   D ++   +  T + D++  T   Q +RFP 
Sbjct: 626 TAQGIVKRVTSD---QPKSHDWEVISLKDGDTVVGAGQVVTGDEDLVFVTSDAQLLRFPA 682

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            A+R   GR+  G+ G+ L  G++V    +V  A                          
Sbjct: 683 HAVRP-QGRSGGGIAGVRLTAGERVAFFGVVDPA-------------------------- 715

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                            E            L  ++ G  K T   ++    R   G+RA 
Sbjct: 716 ----------------REAVVVTASGSADALPGTQPGAIKATPLSEYPGKGRGTGGVRAH 759

Query: 831 DVSKINEI 838
              K    
Sbjct: 760 RFLKGENT 767



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 100/302 (33%), Gaps = 38/302 (12%)

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G     +L  + G  ++   P        ++   V  +  G + R   S+   I   G  
Sbjct: 491 GTPRRTVLLESAGNPVSAAAPL----EVSDDPCWVLLSSTGLLART--SNAEPIPAEGPR 544

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-----SVGVRG--- 726
           A      D ++S    T   ++ L T  G+ +R     +            S G      
Sbjct: 545 AKH----DAVISAVRTTARGEVGLVTSRGRMIRISALELPTLPPLGGAPSLSGGAPLAAY 600

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G++ I++  +     D D     +       + ++ D  +    +  S  +G+  
Sbjct: 601 VDLPRGEEPITVVSL-----DPDGPGLALGTAQGIVKRVTSDQPKSHDWEVISLKDGDTV 655

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q +   E  +  V+      R  ++  R   RSG GI    ++       +     
Sbjct: 656 VGAGQVVTGDEDLVF-VTSDAQLLRFPAHAVRPQGRSGGGIAGVRLTAGER---VAFFGV 711

Query: 847 VNDNDQIILVSDKGT-----------LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           V+   + ++V+  G+           +   P++E     R T GV      K E  + + 
Sbjct: 712 VDPAREAVVVTASGSADALPGTQPGAIKATPLSEYPGKGRGTGGVRAHRFLKGENTLVLA 771

Query: 896 RI 897
            +
Sbjct: 772 WV 773


>gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680]
 gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 818

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 300/894 (33%), Positives = 438/894 (48%), Gaps = 105/894 (11%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL R+AQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I  P  DL+ LM+ + GPD PTG  I+G TGI++AY +G
Sbjct: 188 GMATNMPPHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGGRIVGLTGIRDAYESG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++R   
Sbjct: 368 HRFEVVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSEVQTQYILDTPLRRLTRFDRIELESERDRLNGE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I E   IL S + L  ++  EL +V  +  T RRT ++E            +  +   V 
Sbjct: 462 IDELTGILESDAELRKLVSGELAAVAKKFGTDRRTVLLESAGSTAATVPLQVADDPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R            G+   G   +  D +      +    V   +S G + + 
Sbjct: 522 LSSTGLLARTANGAP-----FGEDADGRRTK-HDVIVSAVPATARGEVGAVTSSGRLLRL 575

Query: 602 KVWRLP------IGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            V  LP           + G  +   L SL   E +  +    E     ++  +   T+ 
Sbjct: 576 NVIDLPRLPETTSAPNLSGGAPISEFLSSLEGDETVVCLTTLDE-----SSPGLALGTEQ 630

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R         N+     + L   D I+   E  T E D++  T   Q +R+  S +
Sbjct: 631 GVVKRVVPD--YPSNKGELEVITLKDGDRIVGAIELSTGEEDLVFITDDAQLLRYQASQV 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + G+ GI L  G +VIS   V       D     +    A  R    D+ + T
Sbjct: 689 RP-QGRAAGGMAGIKLTDGAKVISFTAV-------DPAADAVVFTVAGSRGTLDDSVQTT 740

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           +                                   K T    +    R+  G+R     
Sbjct: 741 A-----------------------------------KLTPFDQYPRKGRATGGVRCQRFL 765

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS--RATKGVVIFST 885
           K  +  ++    PV            GT       E+      R   GV +  T
Sbjct: 766 KGEDCLSIAWAGPVPAR----AAQKNGT-----PAELPEMDPRRDGSGVSLAKT 810



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 87/279 (31%), Gaps = 44/279 (15%)

Query: 644 NNLYVVFATKHGNVRRN----KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           ++   V  +  G + R        +     R+          D I+S    T   ++   
Sbjct: 515 DDPCRVLLSSTGLLARTANGAPFGEDADGRRT--------KHDVIVSAVPATARGEVGAV 566

Query: 700 TKLGQCVRFPISAIRVFAGRNSV----GVRGIS-----LAKGDQVISMAIVLHADADY-- 748
           T  G+ +R  +  +       S     G   IS     L   + V+ +  +  +      
Sbjct: 567 TSSGRLLRLNVIDLPRLPETTSAPNLSGGAPISEFLSSLEGDETVVCLTTLDESSPGLAL 626

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +K +        G+ E IT    D  V          EL   E+ ++ +++   
Sbjct: 627 GTEQGVVKRVVPDYPSNKGELEVITLKDGDRIVGAI-------ELSTGEEDLVFITDDAQ 679

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG-------- 860
             R  +   R   R+  G+    ++   +   +++   V+     ++ +  G        
Sbjct: 680 LLRYQASQVRPQGRAAGGMAGIKLTDGAK---VISFTAVDPAADAVVFTVAGSRGTLDDS 736

Query: 861 ---TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              T    P ++     RAT GV      K E  +S+  
Sbjct: 737 VQTTAKLTPFDQYPRKGRATGGVRCQRFLKGEDCLSIAW 775



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           SS+EG+ +      L      +   +E+G  KR    D+  SN+    +           
Sbjct: 603 SSLEGDETVVCLTTLDESSPGLALGTEQGVVKRV-VPDYP-SNKGELEVITLKDGDR--- 657

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             + A+      + ++ ++D   L+R   +++R   RA  G+         +V+S   + 
Sbjct: 658 -IVGAIELSTGEEDLVFITDDAQLLRYQASQVRPQGRAAGGMAGIKLTDGAKVISFTAVD 716


>gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
 gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
          Length = 979

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 305/954 (31%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVSDKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +G++ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGIQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               L+ V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELINVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELINVDINFENATVILVTKNGMGIKFSATAINPMG-RVASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + I   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEGIDDK--TLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 818

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 275/884 (31%), Positives = 451/884 (51%), Gaps = 93/884 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +P+  L+ LM+ ++GPDFPTGA+I+G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPNATLEDLMKYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R++IV TEIP+ VNK+ +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++    +VV +R
Sbjct: 304 ELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKHILISYLEHEVDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E   PRRT+I +     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFSNPRRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++      G     + D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSIRSYQSTDDADNG-----LPDGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +    +  ++ N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDNDEKIIRVFVLDKLSANIN---FLLATNDGYIKQLELANLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D  ++ V+    +   +I L T     +R+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSLLVGVDAVKPDAKKEITLFTHRAYAIRYDISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L + D +++  +V +   D                                     
Sbjct: 689 KSANLKEDDYIVNYVLVDNKYVDL------------------------------------ 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  ++++G  K+         +R+ +G+      K  +   + A+
Sbjct: 713 -------------MHVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKT-KPHRIAAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            P   +  + + +     +++  NE  +  R + G  +  T  D
Sbjct: 759 VPYAQDHVLHITTTSDRHVKIQTNEYPLGDRYSNGSFVIDTTTD 802



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 24/241 (9%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+           EI      T E   +L ++ G   R  I + +        
Sbjct: 475 KEFSNPRRTQISQESAKV--EIDEKALVTDEQVRVLISRDGYLKRSSIRSYQS-TDDADN 531

Query: 723 GVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           G     L  GD+V+        S   +     +   R  +    +  +      ++EI  
Sbjct: 532 G-----LPDGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGL 586

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
             ++  +   + ++    +       L  +  G+ K+    + + + R+ K    T +  
Sbjct: 587 DNDEKIIRVFVLDKLSANIN-----FLLATNDGYIKQLELANLQPT-RTYKSRAMTAIKL 640

Query: 835 INEIGALVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            N+   LV V  V  +   +I L + +   IR  ++EI  +     GV   +  +D+ +V
Sbjct: 641 KNKDSLLVGVDAVKPDAKKEITLFTHRAYAIRYDISEIPTSGSKAVGVKSANLKEDDYIV 700

Query: 893 S 893
           +
Sbjct: 701 N 701


>gi|329736620|gb|EGG72886.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU045]
          Length = 800

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 279/882 (31%), Positives = 464/882 (52%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E +  +     ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEVVNVY---NEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+  +DE+++V     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K  +   +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKK-KPHRIVAGAVVKENHT 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +       ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYIVFSQHHEEYGNIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 119/279 (42%), Gaps = 15/279 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKH 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E+   ++ +L+ T  G+ +  P+  +        +G    + + + + ++V++  +    
Sbjct: 541 ESVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHISQIVPIDEDEEVVN--VYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D   +            ++  +   +     K   +++    +E    ++L+   ++TV 
Sbjct: 598 DFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVL 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    VND+D II+V+ +G + 
Sbjct: 658 THKGMSLTYSTNELSDTGLRAAGVKSINLKDED---YVVMTEDVNDSDSIIMVTQRGAMK 714

Query: 864 RVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
           R+  N ++ A RA +G+ +      K  R+V+   ++E+
Sbjct: 715 RIDFNVLQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSLTQHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKHESVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  +     ++    E F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S+  F+ + R  K +    V   +E   L+ V  +  +  I +++ KG  + 
Sbjct: 610 KNGMIKKSSASQFKTT-RFNKPLINMKVKDKDE---LINVVRLESDQLITVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 666 YSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704


>gi|259046725|ref|ZP_05737126.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036621|gb|EEW37876.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
          Length = 822

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 299/849 (35%), Positives = 459/849 (54%), Gaps = 58/849 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K++ K
Sbjct: 5   QDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMSIDGNTSDKQFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDP AA RYTE 
Sbjct: 65  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRDVLIEMHGNNGSMDGDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  LL DL K TV+F  N+D + +EP VL ARYPN+LVNG  GI+ G AT IPTH
Sbjct: 125 RLSKISEELLKDLDKKTVEFVLNFDDTEEEPTVLPARYPNLLVNGATGISAGYATEIPTH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  +  ID+P   +  LM+ ++GPDFPTG +I G   ++ AY TGRG +VIR  
Sbjct: 185 NLGEVIDATIHAIDHPKATVKELMQFVKGPDFPTGGIIQGLEELEQAYETGRGKVVIRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G + QI+++EIPY+VNKA +++KI E+   K+I  IA++RDESDR G ++V+E
Sbjct: 245 TKIEPIKGGKSQIIISEIPYEVNKALLVKKIDEIRLNKKIDGIAEVRDESDRTGLQIVVE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+A+ ILN L + T LQ  ++ NMVA++  +P +  L  IL +++ F++EV+ RRT
Sbjct: 305 LKKEANAEGILNYLLKNTDLQVNYNFNMVAIDERRPVQVGLKTILTSYINFQKEVITRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA+DR H++ GL  A++ LDEV+ +IR S + + A+  L++              
Sbjct: 365 QYDLKKAQDRLHIVDGLMKALSILDEVIALIRNSKDKKHAKERLVE-------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   + +Q  AI+ L+L RLT      ++NE   L  +I   L IL S
Sbjct: 411 ------------TYDFTMIQAEAIVNLQLYRLTNTDITILQNEKLDLNEQIATFLSILKS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRV 551
              LL ++K EL  +K +  TPR T+I   + +++ E  ++  +  V V  +  GY KRV
Sbjct: 459 EKTLLQVMKSELRDLKKKYATPRLTQIQAEIEEIKIETEVLVTEEEVYVVATKQGYYKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G     MR+ D V      ST  +++ F+S G      V  +P    
Sbjct: 519 SPRSFASSAPEENG-----MREGDEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPEAKW 573

Query: 612 QARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G  L   +SL   E I T  +   + + S+ +  VVF TK G V++   ++F     
Sbjct: 574 KDVGNHLSQSISLGSNEVILTGFVKAKDSDDSYKDWTVVFFTKEGLVKQTLFNEFTTYRG 633

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              R+        + DE++ V     E+ ++ + T  G  +R+ +S I V     + GV+
Sbjct: 634 YKTRTSNAMKLKTTTDEVVKVVVTNPESLEVFIVTHCGFGLRYELSEIPVVGT-VASGVK 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I+L K D V    +               K +SA      G  +    L+         
Sbjct: 693 AINLRKEDFVAGAMVYSLEH----------KVVSAFLTTQRGAVKRFNVLEISMLTRAKR 742

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG--KGIRATDVSKINEIGALVA 843
                +ELK K   ++ +     G+ TSS ++ I   +G  K +R  D++ ++       
Sbjct: 743 GLMVLRELKTKPHRVVFL----DGEITSSSEYTIIAGNGETKVVRPMDLTLVDRTSN--G 796

Query: 844 VFPVNDNDQ 852
              + DNDQ
Sbjct: 797 SMLLGDNDQ 805



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 94/245 (38%), Gaps = 16/245 (6%)

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           ATK G  +R           S      +   DE++  +  +  ++++L T  G  +  P+
Sbjct: 509 ATKQGYYKRVS---PRSFASSAPEENGMREGDEVVLCQKASTLDNLILFTSKGNYLHLPV 565

Query: 711 SAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             I   A    VG    + ISL    +VI    V   D+D   +   +   + +  +   
Sbjct: 566 HEI-PEAKWKDVGNHLSQSISLGSN-EVILTGFVKAKDSDDSYKDWTVVFFTKEGLVKQT 623

Query: 768 DTEEITSLKN------DSSVEGNISEERCQELKLKEQ--FILTVSEKGFGKRTSSYDFRI 819
              E T+ +       ++      ++E  + +    +   +  V+  GFG R    +  +
Sbjct: 624 LFNEFTTYRGYKTRTSNAMKLKTTTDEVVKVVVTNPESLEVFIVTHCGFGLRYELSEIPV 683

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                 G++A ++ K + +   +     +      L + +G + R  V EI + +RA +G
Sbjct: 684 VGTVASGVKAINLRKEDFVAGAMVYSLEHKVVSAFLTTQRGAVKRFNVLEISMLTRAKRG 743

Query: 880 VVIFS 884
           +++  
Sbjct: 744 LMVLR 748


>gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
 gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
          Length = 820

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 283/877 (32%), Positives = 469/877 (53%), Gaps = 91/877 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QD+ +R  LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D PD  L  +M+I++GPDFPTG +I G  GI+ AY TG+G I++R
Sbjct: 184 PHNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + +E   G R+QI + EIPY+VNKA ++++I EL  EKRI  I+++RDE+DR G R+ 
Sbjct: 244 SKTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A+++ ++E++ +
Sbjct: 304 VELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNKRPELMGIIAMLDAYISHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KA+ R H++ GL  A++ LDEV+++IR S +   A+  L Q            
Sbjct: 364 RSEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     D+  E   L  +I     IL
Sbjct: 412 --------------TYQFSERQAEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
                L+  +K EL  +K    TPR T I   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEGELVKTLKAELTEIKKNYKTPRLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A +        + M++ D    +  ++T  ++L F+S G      V  LP  
Sbjct: 518 RTSYRSYTASKG-----DELAMKETDHAIFIEKMNTMDALLLFTSHGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + +I++ +  GE +   +P  +   +     +VF T+ G  + + ++++   
Sbjct: 573 RWKNLGDHVSHIVTEMGSGEEVIQALPLSKANETQK---LVFLTQAGMTKVSLIANYRPQ 629

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 +A+KL + D++L+V       DI + T+ G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKAMMAIKLKADDKLLNVAVADGSEDIFIATRNGYGLRYPITEIPESGTRTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+V+   ++   +                                          
Sbjct: 689 NLKETDEVVGGVLLQSEE------------------------------------------ 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 707 ---------NRGIILTTQRGSMKKMKASEFEAISRAKRGLLMLRELKANPH-RFIDIRLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +D+++++++K   + + V  +R   R + G  I  
Sbjct: 757 DKDDRLMVLTNKEQTVEIQVENLRTTDRYSNGSFILD 793



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 35/266 (13%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTKLGQCVR 707
             G + +   ++  +I ++ K        +EI  +          E+ I+  TK G   R
Sbjct: 459 DEGELVKTLKAELTEIKKNYKTPRLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKR 518

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVI----SMAIVLHADADYDERICYMKHMSAQRR 763
                            R  + +KGD++       AI +      D  + +  H +   R
Sbjct: 519 TS--------------YRSYTASKGDELAMKETDHAIFIEKMNTMDALLLFTSHGNFIYR 564

Query: 764 LISGDTEEITSLKNDSS----VEGNISEERCQELKLKE----QFILTVSEKGFGKRTSSY 815
            +    +       D       E    EE  Q L L +    Q ++ +++ G  K +   
Sbjct: 565 PVHELPDIRWKNLGDHVSHIVTEMGSGEEVIQALPLSKANETQKLVFLTQAGMTKVSLIA 624

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++R   R  K + A  +   ++   L+ V   + ++ I + +  G  +R P+ EI  +  
Sbjct: 625 NYRPQ-RYSKAMMAIKLKADDK---LLNVAVADGSEDIFIATRNGYGLRYPITEIPESGT 680

Query: 876 ATKGVVIFSTAKDERVVSVERIRESE 901
            T GV   +  + + VV    ++  E
Sbjct: 681 RTAGVKAINLKETDEVVGGVLLQSEE 706


>gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201]
 gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 851

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 291/839 (34%), Positives = 418/839 (49%), Gaps = 79/839 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+  + I  V +T EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M QMG+  +
Sbjct: 16  PEDFVEHIVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQMGLRPD 75

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + +VK AR+ GEVMGK HPHG+AAIYDA+ RMAQ +++R+ L++G GNFGS+D D PAA 
Sbjct: 76  RGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-DGPAAP 134

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+  AA  L  DL +D VDF PNYD  FQ+P VL A YPN+LVNG  GIAVGMAT
Sbjct: 135 RYTEARMAPAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIAVGMAT 194

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HN+ EV  G   ++ NP+  L+ LM++I GPD P+G  I+G  GI++AY TGRGS 
Sbjct: 195 NMAPHNMREVAAGARHLVLNPEATLEELMKLIPGPDLPSGGRIVGLEGIRDAYRTGRGSF 254

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG- 307
             R    +E+ S  ++ IVVTE+PY V    + EKI + V+ K++  I+D+ D +DR   
Sbjct: 255 RTRATVSVEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDLTDRTNG 314

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+K G +   +L QLYR+T L+  F +N VAL   +P    L+ +L+ +   R  
Sbjct: 315 LRLVIEVKNGFNPQAVLAQLYRHTPLEESFGINNVALVDGQPRTMGLLELLRVYTDHRIA 374

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  L+         
Sbjct: 375 VVRRRTAFRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDRLIA-------- 426

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS  Q   ILELRL +LT   R ++  E + L  EI E 
Sbjct: 427 ------------------VFDLSRAQAEHILELRLRQLTKFSRIELEAERDQLQKEIAEL 468

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--------------DMEDEDCI 533
             IL S + L G++  EL     +    RRT ++E                        I
Sbjct: 469 EAILGSETTLRGVVADELSETAQKFGDERRTVLLEAEDLPAVTAAQTGGKKAATSVALEI 528

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +   V +S  G + R       A         G      D +T +   +    +   +
Sbjct: 529 SDDPCWVFLSTTGRIARSATRRPLA--------DGSRRFKHDALTSVVPATARGEIAAVT 580

Query: 594 SLGFVYKEKVWRLPIGS------PQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           S G + +     +P+          A G    + L L + E +  + P  E         
Sbjct: 581 STGRMLRVSCVDIPVLQDFDGVPRLADGVPAADFLGLEKNEALVGLAPLSE--------V 632

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V   T  G V+R   +    +N     A+KL   D ++ V       ++++ +   + + 
Sbjct: 633 VAIGTAAGVVKRV--NPDYPLNLDQWPAIKLKDGDRVVGVSAAPDGTELVMVSSDAKLLH 690

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           FP SA+R   GR + GV G+ LA G+ VI  A V+  D+              Q   +  
Sbjct: 691 FPASAVRP-QGRTAGGVAGMKLAAGEHVIFCAAVVPQDSTVVVTQA---RGDGQLPEMGE 746

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI-LTVSEKGFGK--------RTSSYDF 817
            + ++T L    +     +  R Q L   E  + L     G GK        RT   ++
Sbjct: 747 ASVKVTPLSEFPAKGRATAGVRAQRLLAGEDALNLAWVGHGPGKAVSAAGVARTLPTEY 805



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 85/273 (31%), Gaps = 37/273 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   VF +  G + R   S   +    G    K    D + SV   T   +I   T  G
Sbjct: 530 DDPCWVFLSTTGRIAR---SATRRPLADGSRRFK---HDALTSVVPATARGEIAAVTSTG 583

Query: 704 QCVRFPISAIRVFA-----GRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYM 755
           + +R     I V        R + GV       L K + ++ +A +    A         
Sbjct: 584 RMLRVSCVDIPVLQDFDGVPRLADGVPAADFLGLEKNEALVGLAPLSEVVAIGTAAGVVK 643

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +        ++ D      LK+   V G  +             ++ VS         + 
Sbjct: 644 RVNPDYP--LNLDQWPAIKLKDGDRVVGVSA-------APDGTELVMVSSDAKLLHFPAS 694

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD---KGT--------LIR 864
             R   R+  G+    ++       ++    V   D  ++V+     G         +  
Sbjct: 695 AVRPQGRTAGGVAGMKLAAGE---HVIFCAAVVPQDSTVVVTQARGDGQLPEMGEASVKV 751

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            P++E     RAT GV        E  +++  +
Sbjct: 752 TPLSEFPAKGRATAGVRAQRLLAGEDALNLAWV 784



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHAD 745
               + +   +  +  G+  R           R           K D + S+       +
Sbjct: 525 ALEISDDPCWVFLSTTGRIARSATRRPLADGSRR---------FKHDALTSVVPATARGE 575

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-- 803
                    M  +S     +  D + +  L +       +  E+ + L         V  
Sbjct: 576 IAAVTSTGRMLRVSCVDIPVLQDFDGVPRLADGVPAADFLGLEKNEALVGLAPLSEVVAI 635

Query: 804 -SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            +  G  KR +  D+ +       +      K+ +   +V V    D  ++++VS    L
Sbjct: 636 GTAAGVVKRVNP-DYPL------NLDQWPAIKLKDGDRVVGVSAAPDGTELVMVSSDAKL 688

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  P + +R   R   GV     A  E V+    +   +
Sbjct: 689 LHFPASAVRPQGRTAGGVAGMKLAAGEHVIFCAAVVPQD 727


>gi|116629642|ref|YP_814814.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238854273|ref|ZP_04644617.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282851153|ref|ZP_06260520.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311110715|ref|ZP_07712112.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
 gi|116095224|gb|ABJ60376.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238833084|gb|EEQ25377.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282557685|gb|EFB63280.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311065869|gb|EFQ46209.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
          Length = 826

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/852 (32%), Positives = 442/852 (51%), Gaps = 48/852 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 6   ERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE 
Sbjct: 66  AAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTES 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 126 RLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V ++ +PD   D LME ++GPDFPTG ++LG  GIK AY TGRG I +R  
Sbjct: 186 NLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I+   G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VIE
Sbjct: 246 TTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  +++VV +RT
Sbjct: 306 LKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVTKRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A+  L+ +             
Sbjct: 366 EFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKNNLIAK------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +  Q  AI+ L+L RLT    + ++ E   L  +I +  +ILS 
Sbjct: 413 -------------YEFTPNQAEAIVSLQLYRLTNTDVNQLKQEQTELNKKIDKFNEILSD 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR 
Sbjct: 460 NQVLEKVVVKELNAVKKEFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKRS 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +++      G     + D D V     +ST  ++  F++ G +    V  L     
Sbjct: 520 SIRSFQSTDTSDNG-----LPDGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKW 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D       
Sbjct: 575 KETGQHLSQEIGLDSDEEIIRVFEINDLKA---NLNFLIATNDGYIKQVTLADLQPTRTY 631

Query: 670 -RSGKIAMKLD-SRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 A+KL     +++ ++    +   +I L T     VRF IS I   +G  +VGV+
Sbjct: 632 KSRAITAIKLKSKESKVVRIDQVKPDSKQEITLITNQAYAVRFDISEI-PTSGSKAVGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +++  +      D    I  +    A ++L      ++T  K    V   +
Sbjct: 691 SVNLKDNDYIVNYVLADPKYVDLIN-IGIITQRGAFKQLKLNLINKVTRAKRGVLVLREL 749

Query: 786 SEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +  + + +    +   +   +        ++ +F + +R   G    D        +L
Sbjct: 750 KTKPHRIMAINSYGENHILHLTTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPISL 809

Query: 842 VAVFPVNDNDQI 853
               P+ D   I
Sbjct: 810 TLGQPLADGRDI 821



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 82/236 (34%), Gaps = 14/236 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+   A       EI        E+  +L +K G   R  I + +     +  
Sbjct: 476 KEFGSPRRTEITAKAAKI--EINEKALVADEDVRVLVSKDGYLKRSSIRSFQS-TDTSDN 532

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS---GDTEEITSLKNDS 779
           G     L  GD+VI    +   D  Y               LI     +T +  S +   
Sbjct: 533 G-----LPDGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGL 587

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I               L  +  G+ K+ +  D + + R+ K    T +   ++  
Sbjct: 588 DSDEEIIRVFEINDLKANLNFLIATNDGYIKQVTLADLQPT-RTYKSRAITAIKLKSKES 646

Query: 840 ALVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            +V +  V  +   +I L++++   +R  ++EI  +     GV   +   ++ +V+
Sbjct: 647 KVVRIDQVKPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDNDYIVN 702



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 97/259 (37%), Gaps = 12/259 (4%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   E     +    V  +K G ++R+ +  F   + S      L   D+++  +T +  
Sbjct: 493 IEINEKALVADEDVRVLVSKDGYLKRSSIRSFQSTDTS---DNGLPDGDKVIFEKTMSTL 549

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           +++ + T  G  +  P+  +         G    + I L   +++I +  +    A+ + 
Sbjct: 550 DNLYIFTNKGNLIYRPVHELIE-TKWKETGQHLSQEIGLDSDEEIIRVFEINDLKANLNF 608

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC----QELKLKEQFILTVSEK 806
            I        Q  L           +  ++++    E +     Q     +Q I  ++ +
Sbjct: 609 LIATNDGYIKQVTLADLQPTRTYKSRAITAIKLKSKESKVVRIDQVKPDSKQEITLITNQ 668

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-VNDNDQIILVSDKGTLIRV 865
            +  R    +   S     G+++ ++   + I   V   P   D   I +++ +G   ++
Sbjct: 669 AYAVRFDISEIPTSGSKAVGVKSVNLKDNDYIVNYVLADPKYVDLINIGIITQRGAFKQL 728

Query: 866 PVNEIRIASRATKGVVIFS 884
            +N I   +RA +GV++  
Sbjct: 729 KLNLINKVTRAKRGVLVLR 747


>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
 gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
          Length = 818

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 276/884 (31%), Positives = 451/884 (51%), Gaps = 93/884 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+I+G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDATLEDLMKYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R++IV TEIP+ VNK+ +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++    +VV +R
Sbjct: 304 ELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKHILISYLEHEVDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E   PRRT+I +     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFSNPRRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++      G     + D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSIRSYQSTDDADNG-----LPDGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +    +  ++ N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDNDEKIIRVFVLDKLSANIN---FLLATNDGYIKQLELANLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D  ++ V+    +   +I L T     +R+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSLLVGVDAVKPDAKKEITLFTHRAYAIRYDISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L + D +++  +V +   D                                     
Sbjct: 689 KSANLKEDDYIVNYVLVDNKYVDL------------------------------------ 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  ++++G  K+         +R+ +G+      K  +   + A+
Sbjct: 713 -------------MHVGLITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKT-KPHRIAAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            P   +  + + +     +++  NE  +  R + G  +  T  D
Sbjct: 759 VPYAQDHVLHITTTSDRHVKIQTNEYPLGDRYSNGSFVIDTTTD 802



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 24/241 (9%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+           EI      T E   +L ++ G   R  I + +        
Sbjct: 475 KEFSNPRRTQISQESAKV--EIDEKALVTDEQVRVLISRDGYLKRSSIRSYQS-TDDADN 531

Query: 723 GVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           G     L  GD+V+        S   +     +   R  +    +  +      ++EI  
Sbjct: 532 G-----LPDGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAKWKETGQHLSQEIGL 586

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
             ++  +   + ++    +       L  +  G+ K+    + + + R+ K    T +  
Sbjct: 587 DNDEKIIRVFVLDKLSANIN-----FLLATNDGYIKQLELANLQPT-RTYKSRAMTAIKL 640

Query: 835 INEIGALVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            N+   LV V  V  +   +I L + +   IR  ++EI  +     GV   +  +D+ +V
Sbjct: 641 KNKDSLLVGVDAVKPDAKKEITLFTHRAYAIRYDISEIPTSGSKAVGVKSANLKEDDYIV 700

Query: 893 S 893
           +
Sbjct: 701 N 701


>gi|242242635|ref|ZP_04797080.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
 gi|242233771|gb|EES36083.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
          Length = 800

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/882 (31%), Positives = 464/882 (52%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E +  +     ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEVVNVY---NEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+   D++++V     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LINMKVKDNDKLINVVRLETDQLITVLTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K  +   +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKK-KPHRIVAGAVVKENHT 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +       ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYVVFSQHHEEYGKIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 117/281 (41%), Gaps = 19/281 (6%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKH 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E    ++ +L+ T  G+ +  P+  +        +G    + + + + ++V+++    + 
Sbjct: 541 EAVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHISQIVPIDEDEEVVNV----YN 595

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER---CQELKLKEQFIL 801
           + D+     Y+          S  ++  T+  N   +   + +            +Q I 
Sbjct: 596 EKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLIT 655

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            ++ KG     S+ +   +     G+++ ++   +    +V    VND+D II+V+ +G 
Sbjct: 656 VLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDED---YVVMTEDVNDSDSIIMVTQRGA 712

Query: 862 LIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
           + R+  N ++ A RA +G+ +      K  R+V+   ++E+
Sbjct: 713 MKRIDFNVLQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSLTQHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKHEAVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  +     ++    E F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S+  F+ + R  K +    V   ++   L+ V  +  +  I +++ KG  + 
Sbjct: 610 KNGMIKKSSASQFKTT-RFNKPLINMKVKDNDK---LINVVRLETDQLITVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 666 YSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704


>gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
          Length = 979

 Score =  556 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 306/954 (32%), Positives = 469/954 (49%), Gaps = 88/954 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E   +  ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++     E    I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVVDKKWKDKGERLEDLIRGLSLED-EKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T +G +++  L  F+       +A+KL + D + SV     ++    + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++ F+   S +G  K+TS  +F      G+               L+ V    +N 
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREFL-----GEFNNQIAYKFKTPKDELINVDINFENA 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 862 TVILVTKNGMGIKFLATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 8/240 (3%)

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG             +   V++  +++ FS+ G V+K   + L           + +++ 
Sbjct: 734 KGNIKTFSNMNSNSYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESN----ISDLVD 789

Query: 624 -LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
              + E I  + P  E      +L+V F ++ G V++  L +F+    +         +D
Sbjct: 790 GFEKDELIIKVAPINEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKD 849

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V+   +   ++L TK G  ++F  +AI     R + GV GISL   ++VI   ++ 
Sbjct: 850 ELINVDINFENATVILVTKNGMGIKFLATAINPMG-RVASGVTGISLKDDNKVIFGKVIP 908

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            ++   D+      +   ++ L S   + I   K     E NI + + Q    +   ++ 
Sbjct: 909 PSEGIDDK--TLEAYNDYKKELTSNYEKLILESKQKEKAEVNIEDIKLQNRAGRGSSLMI 966


>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
          Length = 824

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/891 (31%), Positives = 452/891 (50%), Gaps = 92/891 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K +
Sbjct: 3   NKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTFDKPF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K ++ LL D+ K+TV    N+D +  EP VL A++PN+LVNG  GI+ G AT IP
Sbjct: 123 ESRLSKISNLLLQDIDKNTVKMVLNFDDTEYEPTVLPAQFPNLLVNGSTGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  + ++ +P+  L+ LM+ ++GPDFPTGAVI+G  GIK AY TGRG I +R
Sbjct: 183 PHNLAEVIDATIYLLKHPEASLEDLMQFVKGPDFPTGAVIMGTKGIKEAYQTGRGRIQVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +V
Sbjct: 243 AKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+V+ +
Sbjct: 303 IELKKNADAENILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHDEDVITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L++            
Sbjct: 363 RTKYDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIKE----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT    D +  E N L  ++     +L
Sbjct: 412 ---------------FKFTERQAEAIVSLQLYRLTNTDVDALIAEQNDLNKKVAVYQKLL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
           S R+ L   I +EL +VK    +PRRT+I       +++++  +  E + V VS  GY+K
Sbjct: 457 SDRATLEKEIIKELTAVKKNFASPRRTQISHESAKVEIDEKALVADEQVRVLVSRDGYLK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y++      G     + + D V     +ST  ++  F++ G +    V  L   
Sbjct: 517 RSSLRSYQSSDEADNG-----LPENDKVVYEKTLSTLDNLYLFTNRGNLIYRPVHELTET 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI- 668
             +  G+ L   + L   E+I  +  F + + + +    + AT  G +++ KLSD     
Sbjct: 572 KWKETGQHLSQEVGLATDEQIIRVFDFDKLDKNVD---FLMATNDGYIKQVKLSDLQPTR 628

Query: 669 --NRSGKIAMKLDSRD-EILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                   AMK+ S D +++ ++     + +I L T     V++ +S I  F G  ++GV
Sbjct: 629 TYRSRAITAMKMKSEDSKMIRIDLIKTNSGEITLFTHRAYAVKYDVSEISEFGG-KALGV 687

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D V+   +V    AD  +                                  
Sbjct: 688 KSVNLKDDDYVVGYVLVQPEFADLIK---------------------------------- 713

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +  ++++G  K+         +R+ +G+      K  +   + A+
Sbjct: 714 ---------------VGLITQRGAFKQFKLSLVNKVSRAKRGVMVLRELKT-KPHRIAAI 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                N  + + +     + +  N+  +  R + G  +     D   VS+E
Sbjct: 758 AAYGQNHVLKMTTSSDRHMDINTNKFPLGDRYSNGSFVVDPTVDGTPVSLE 808



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 102/323 (31%), Gaps = 19/323 (5%)

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI-LSLNQGERITTIMPFPEDESSWNNL 646
           ++    +     K  +        QA  +A++++ L       +  ++    D +    +
Sbjct: 394 TIRASKNKADAKKNLIKEFKFTERQA--EAIVSLQLYRLTNTDVDALIAEQNDLNKKVAV 451

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-----TCTQENDILLTTK 701
           Y    +    + +  + +   + ++     +     E   VE         E   +L ++
Sbjct: 452 YQKLLSDRATLEKEIIKELTAVKKNFASPRRTQISHESAKVEIDEKALVADEQVRVLVSR 511

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G   R  + + +  +     G     L + D+V+    +   D  Y             
Sbjct: 512 DGYLKRSSLRSYQS-SDEADNG-----LPENDKVVYEKTLSTLDNLYLFTNRGNLIYRPV 565

Query: 762 RRLIS---GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             L      +T +  S +   + +  I      +   K    L  +  G+ K+    D +
Sbjct: 566 HELTETKWKETGQHLSQEVGLATDEQIIRVFDFDKLDKNVDFLMATNDGYIKQVKLSDLQ 625

Query: 819 ISNRSG-KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
            +     + I A  +   +     + +   N   +I L + +   ++  V+EI       
Sbjct: 626 PTRTYRSRAITAMKMKSEDSKMIRIDLIKTNSG-EITLFTHRAYAVKYDVSEISEFGGKA 684

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
            GV   +   D+ VV    ++  
Sbjct: 685 LGVKSVNLKDDDYVVGYVLVQPE 707


>gi|312863329|ref|ZP_07723567.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
 gi|311100865|gb|EFQ59070.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
          Length = 818

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/895 (32%), Positives = 458/895 (51%), Gaps = 87/895 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +       +++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASTIDEVGK-----RDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +L++ E +       + E+       + ATK G ++R +  +F     
Sbjct: 571 KDLGEHLSQTITNLSKDEEVLYAEILDDFETG----TYLAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D+ D I++V     ++ I++ T+ G  +RF    + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKDNSDFIVTVTPIQLDD-IMIITQKGYALRFNADEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V ++ +         +    +   ++ +R+ + D  +        +      
Sbjct: 685 INLKDDDTVQAVFVANT------QSFYLLTQRASLKRVATADIPQ--------AKRAGRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVF 845
            +  +ELK K   + T                             V   N  G + +   
Sbjct: 731 LQVLRELKTKPHSVFTAG--------------------------PVFTENAGGEIDLLAT 764

Query: 846 PVNDNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           PV +  Q +LV+   G    V ++ + ++ R + G  I   A  E V S + I +
Sbjct: 765 PVEETPQTLLVTATTGETEEVDLSLLNLSDRTSNGSFIEGLADKE-VFSAKIIEK 818


>gi|323466443|gb|ADX70130.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           H10]
          Length = 818

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/881 (31%), Positives = 443/881 (50%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +L+
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F   +S   N   + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQIIRVFVF---DSLDINKNFILATNDGYIKQLELTNLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D  ++ V      +   I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V                                           
Sbjct: 689 KSVNLKDDDYIVGYVLV------------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     L    +  ++++G  K+         +R+ +G+      K  +   +VA+
Sbjct: 706 ------DSKYLDLMHVGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKT-KPHRIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  +  R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLGDRYSNGSFVIDT 799



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 32/245 (13%)

Query: 663 SDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F    R+        +K+D +           E   +L ++ G   R  + + +    
Sbjct: 475 KEFASPRRTEISEESAKVKIDEK------ALVADEQVRVLISRDGYLKRSSLRSYQS-TD 527

Query: 719 RNSVGVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               G     L  GD+VI        S   +     +   R  +    +  +      ++
Sbjct: 528 DADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQ 582

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EI    ++  +   +       L + + FIL  +  G+ K+    + + + R+ K    T
Sbjct: 583 EIGLDSDEQIIRVFV----FDSLDINKNFIL-ATNDGYIKQLELTNLQPT-RTYKSRAMT 636

Query: 831 DVSKINEIGALVAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   N+   L+ V  +N  D  +I L + +   +R  ++EI  +     GV   +   D
Sbjct: 637 AIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDD 696

Query: 889 ERVVS 893
           + +V 
Sbjct: 697 DYIVG 701



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/510 (12%), Positives = 171/510 (33%), Gaps = 39/510 (7%)

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           P    + L+ +  +   +   ID I +        G   + E++  A  +  L       
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILN--YLFK 320

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
             D++   N   + I     +     R+L    +    V  +     RT+      +   
Sbjct: 321 NTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTK-----RTKFDLNKAEARL 375

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQR-RGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           E        +  +  +    R   +   A++    K +      +      L+ ++    
Sbjct: 376 EIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAEAIVSLQLYRLTNTDV 435

Query: 589 VLFFSSLGFVYKE-KVWRLPIGSPQARGKALINILSLNQGE----------RITTIMPFP 637
               +    + K  + +R  +   +   K +I  LS  + E            +  +   
Sbjct: 436 NELIAEQSKLNKLAEKYRKLLADRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKID 495

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
           E     +    V  ++ G ++R+ L  +   + +      L   D+++   T +  +++ 
Sbjct: 496 EKALVADEQVRVLISRDGYLKRSSLRSYQSTDDA---DNGLPDGDKVIYENTLSTLSNLY 552

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICY 754
           L T  G  +  P+  +         G    + I L   +Q+I + +    D + +  +  
Sbjct: 553 LFTNHGNVIYRPVHELVE-TKWKETGQHLSQEIGLDSDEQIIRVFVFDSLDINKNFILAT 611

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGK 810
                 Q  L +         +  ++++    +     + L     ++ I   + + +  
Sbjct: 612 NDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAV 671

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QII---LVSDKGTLIRVP 866
           R +  +   S     G+++ ++   +    +V    V+     ++   L++ +G   +  
Sbjct: 672 RYNISEIPTSGSKAVGVKSVNLKDDD---YIVGYVLVDSKYLDLMHVGLITQRGAFKQFK 728

Query: 867 VNEIRIASRATKGVVIFSTAKD--ERVVSV 894
           ++ +   SRA +GV++    K    R+V++
Sbjct: 729 LSLVNKVSRAKRGVLVLRELKTKPHRIVAL 758


>gi|111657636|ref|ZP_01408369.1| hypothetical protein SpneT_02001168 [Streptococcus pneumoniae
           TIGR4]
          Length = 817

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/880 (31%), Positives = 451/880 (51%), Gaps = 83/880 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK
Sbjct: 181 IDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A
Sbjct: 241 LKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   
Sbjct: 301 NTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKE 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                     
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------------- 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     + 
Sbjct: 400 -----KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     +
Sbjct: 455 NLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+
Sbjct: 515 AASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGE 569

Query: 617 ALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RS 671
            L   + +    E I  +      +   +       T+ G ++R +  +F        +S
Sbjct: 570 HLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKS 626

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L +
Sbjct: 627 VKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKE 684

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D       VL +    +    Y+       + +S +    TS                 
Sbjct: 685 DD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------- 720

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                             KR       + N+  +   A  V++   +G   +     ++ 
Sbjct: 721 ----------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQ 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 TLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 804



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 424 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 483

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 484 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 537

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 538 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 597

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 598 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 649

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 650 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 690


>gi|328466148|gb|EGF37307.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 818

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/881 (31%), Positives = 443/881 (50%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKXADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F   +   N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQIIRVFVFDSLDIKKN---FILATNDGYIKQLELTNLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D  ++ V      +   I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V                                           
Sbjct: 689 KSVNLKDDDYIVGYVLV------------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     L    +  ++++G  K+         +R+ +G+      K  +   +VA+
Sbjct: 706 ------DSKYLDLMHVGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKT-KPHRIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  ++ R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLSDRYSNGSFVIDT 799



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 663 SDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F    R+        +K+D +           E   +L ++ G   R  + + +    
Sbjct: 475 KEFASPRRTEISEESAKVKIDEK------ALVADEQVRVLISRDGYLKRSSLRSYQS-TD 527

Query: 719 RNSVGVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               G     L  GD+VI        S   +     +   R  +    +  +      ++
Sbjct: 528 DADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQ 582

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EI    ++  +   +       L +K+ FIL  +  G+ K+    + + + R+ K    T
Sbjct: 583 EIGLDSDEQIIRVFV----FDSLDIKKNFIL-ATNDGYIKQLELTNLQPT-RTYKSRAMT 636

Query: 831 DVSKINEIGALVAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   N+   L+ V  +N  D  +I L + +   +R  ++EI  +     GV   +   D
Sbjct: 637 AIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDD 696

Query: 889 ERVVS 893
           + +V 
Sbjct: 697 DYIVG 701



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 72/568 (12%), Positives = 189/568 (33%), Gaps = 81/568 (14%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++     R+E+V     + +NKA     +          +D +  +   +     + 
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDE--IRLNKEIDGIAEVRDETDRHGLSI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDS--SYTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  +A +I + +    D   SY        +++ VQ   + IL   L     +  
Sbjct: 302 VIELKKXADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +LN     ++    ++ +   L  +IK  + + K++    ++  I +        
Sbjct: 362 KRTKFDLNKAEARLEIIQGLIHAMDILDQVIK-TIRASKNK-ADAKKNLIAK-------- 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                       +       V L +YR                         ++      
Sbjct: 412 ---------YKFTANQAEAIVSLQLYR-------------------------LTNTDVNE 437

Query: 591 FFSSLGFVYKE-KVWRLPIGSPQARGKALINILSLNQGE----------RITTIMPFPED 639
             +    + K  + +R  +   +   K +I  LS  + E            +  +   E 
Sbjct: 438 LIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEK 497

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
               +    V  ++ G ++R+ L  +   + +      L   D+++   T +  +++ L 
Sbjct: 498 ALVADEQVRVLISRDGYLKRSSLRSYQSTDDA---DNGLPDGDKVIYENTLSTLSNLYLF 554

Query: 700 TKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           T  G  +  P+  +         G    + I L   +Q+I + +    D   +  +    
Sbjct: 555 TNHGNVIYRPVHELVE-TKWKETGQHLSQEIGLDSDEQIIRVFVFDSLDIKKNFILATND 613

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRT 812
               Q  L +         +  ++++    +     + L     ++ I   + + +  R 
Sbjct: 614 GYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRY 673

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QII---LVSDKGTLIRVPVN 868
           +  +   S     G+++ ++   +    +V    V+     ++   L++ +G   +  ++
Sbjct: 674 NISEIPTSGSKAVGVKSVNLKDDD---YIVGYVLVDSKYLDLMHVGLITQRGAFKQFKLS 730

Query: 869 EIRIASRATKGVVIFSTAKD--ERVVSV 894
            +   SRA +GV++    K    R+V++
Sbjct: 731 LVNKVSRAKRGVLVLRELKTKPHRIVAL 758


>gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
 gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
          Length = 808

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 282/896 (31%), Positives = 459/896 (51%), Gaps = 99/896 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 4   ERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RYTE
Sbjct: 64  KSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+R 
Sbjct: 184 HNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G+++QI+VTEIPY+VNK+A++++I  L   K++  I+++RDESDR+G RVVI
Sbjct: 244 KTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLRVVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  RR
Sbjct: 304 ELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+              
Sbjct: 364 TKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      ++ E   L   I    +IL+
Sbjct: 412 --------------FSFTEAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  +I++EL ++  +  + R T I +    L +E E  + +ED+++ VSH GYVKR
Sbjct: 458 NPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A      G     ++DED+     +V+T + +  F++ G +    +  +    
Sbjct: 518 SSLRSFNASDNDENG-----LKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESR 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--- 667
            +  G+ L   + L   E I     F   E+   +   + ATK G +++ KL+D      
Sbjct: 573 WKDTGEHLSQTVGLGNDEYILNAFVF---ENIDQDAKFLIATKEGYIKQVKLADLKPGRT 629

Query: 668 -INRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              R+ +        DE++SV     +   +   +  G  +++ +  +       + GV+
Sbjct: 630 YKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGLKYSLDEVPTNGV-LAAGVK 688

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + ++ +V  +D                                        
Sbjct: 689 CMDLR-DDTLANVILVSESD---------------------------------------- 707

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +  ++++G  K+    D  ++ R+ +G++     K  +   ++   
Sbjct: 708 -------------EVSIITQRGSYKKMKVADVPLTTRARRGVQILRELKT-KPHRIIFAE 753

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRES 900
            V  N +++L+   G    V   + ++  R + G  +   A+ + + ++  +I E 
Sbjct: 754 LVQTNQELVLLLSDGKQETVKPEDHQLNDRYSNGSFVVD-AETDTIENIYTKIIED 808



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 12/220 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV---LHA 744
               QE+ +LL +  G   R  + +    +  +  G     L   D  I  ++V    H 
Sbjct: 498 VMVAQEDVMLLVSHDGYVKRSSLRSFNA-SDNDENG-----LKDEDYPILQSVVNTLSHL 551

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++     + +         DT E  S       +  I      E   ++   L  +
Sbjct: 552 FIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYILNAFVFENIDQDAKFLIAT 611

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLI 863
           ++G+ K+    D +   R+ K   +  +    ++  +++V  V  D  Q+   S  G  +
Sbjct: 612 KEGYIKQVKLADLKP-GRTYKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGL 670

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  ++E+        GV      +D+ + +V  + ES+ V
Sbjct: 671 KYSLDEVPTNGVLAAGVKCMDL-RDDTLANVILVSESDEV 709


>gi|229162429|ref|ZP_04290390.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
 gi|228620908|gb|EEK77773.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
          Length = 807

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 287/834 (34%), Positives = 452/834 (54%), Gaps = 45/834 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEADELNKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEQRLLHVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G     M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQI 668
             +  G+ + N++SL + E I      P  E      ++VF T++G +++ +L+ + +Q 
Sbjct: 571 RWKDLGQHVANLVSLERDEMIIWATVVPNFEE--EKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   D ++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVR-AAGVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S            +++  +    A +RL + + E+ T  K    +   +   
Sbjct: 688 LKEDDYVASG----KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRN 743

Query: 789 RCQ----ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             +    E+   ++ +   +EK   +      +R  +R   G    DV+   E+
Sbjct: 744 PYRIVGIEIVRDDELVYMKTEKHVVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 103/262 (39%), Gaps = 13/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R           +GK    +   D +L          +LL T  G  + 
Sbjct: 505 IVTVTKEGYVKRT--GWRSHNASNGK-DFGMKEGDILLERFDTNTTETVLLFTNKGNYIY 561

Query: 708 FPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +        +G    +L   + D++I  A V+    +    I ++      ++  
Sbjct: 562 LPVYEMPEI-RWKDLGQHVANLVSLERDEMIIWATVVPNFEEEKRFIVFVTRNGMIKKTE 620

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSG 824
               +     +   +V     +             I+  +   +       +        
Sbjct: 621 LNQYKVQRYSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVRA 680

Query: 825 KGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            G++A ++ + +    + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF
Sbjct: 681 AGVKAINLKEDD---YVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIF 737

Query: 884 STAKDE--RVVSVERIRESEIV 903
              K    R+V +E +R+ E+V
Sbjct: 738 KELKRNPYRIVGIEIVRDDELV 759



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 30/284 (10%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I  L     E    I+       S   L  V  T    V++    D   I       +K+
Sbjct: 434 ITALEQEADELNKKIIELQSILQSEQRLLHVIKTDLKRVKKTYSDDRRAIIEEQIEEIKI 493

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D            QE+ I+  TK G   R        +   N+   +   + +GD     
Sbjct: 494 DVE------VMIPQEDVIVTVTKEGYVKRTG------WRSHNASNGKDFGMKEGD----- 536

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL----- 793
            ++   D +  E +    +      L   +  EI        V   +S ER + +     
Sbjct: 537 ILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIWATV 596

Query: 794 ----KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               + +++FI+ V+  G  K+T    +++  R  +   A ++ K +    +V +F  + 
Sbjct: 597 VPNFEEEKRFIVFVTRNGMIKKTELNQYKVQ-RYSRAFVAVNLKKDD---YVVDIFATDG 652

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              I+L +     +    +E+        GV   +  +D+ V S
Sbjct: 653 TSDIVLATYGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVAS 696


>gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
 gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
          Length = 814

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 288/875 (32%), Positives = 450/875 (51%), Gaps = 85/875 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I         +   +      AT+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYAEVV---DQFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ +LL ++ G  +RF I  + V     + GV+ ++L   D + +
Sbjct: 627 KDETDQIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGA-KATGVKAMNLKADDALQA 684

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            A + +  + Y                                          Q   LK 
Sbjct: 685 -AFICNTSSFYL---------------------------------------LTQRGSLKR 704

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV- 856
             I  +      KR       + N+  +   A  V++    G L +   V +NDQ +LV 
Sbjct: 705 VSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGAVAEQGFFGDLFST-EVEENDQTLLVQ 763

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 764 SNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 91/279 (32%), Gaps = 28/279 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSTLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    +F    R+ K          +E   +VAV P+  +D ++
Sbjct: 592 T----YFVATRLGQIKRVERKEFSPW-RTYKSKSVKYAKLKDETDQIVAVAPIKLDD-VL 645

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+S  G  +R  + E+ +      GV   +   D+ + +
Sbjct: 646 LISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQA 684


>gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/885 (31%), Positives = 451/885 (50%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   KA  R  ++ GL   ++ LDEV+ +IR S N    +  L                
Sbjct: 362 PFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK    TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E    I+     +   +      AT+ G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRT 627

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ 
Sbjct: 628 YRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKA 685

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D       VL +    +    Y+       + +S +    TS            
Sbjct: 686 MNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS------------ 726

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                                  KR       + N+  +   A  V++   +G   +   
Sbjct: 727 ---------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEV 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 98/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ ++          D     
Sbjct: 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATPRLSSLEDTAKAI 489

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + + ++      ++  +  
Sbjct: 544 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 603

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 604 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 655

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 656 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|319401356|gb|EFV89567.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis FRI909]
          Length = 800

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/882 (31%), Positives = 465/882 (52%), Gaps = 92/882 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL+ +K +    R + I   + +  ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELIEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E +  +     ++   +  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEVVNVY---NEKDFKHEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+   D++++V     +  I + T  G  + +  + +     R + GV+ I+L   
Sbjct: 631 LINMKVKDNDKLINVVRLETDQLITVLTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K  +   +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKK-KPHRIVAGAVVKENHT 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +       ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYVVFSQHHEEYGKIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 120/279 (43%), Gaps = 15/279 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKH 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E    ++ +L+ T  G+ +  P+  +        +G    + + + + ++V++  +    
Sbjct: 541 EAVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHISQIVPIDEDEEVVN--VYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D  ++            ++  +   +     K   +++   +++    ++L+   ++TV 
Sbjct: 598 DFKHEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLITVL 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    VND+D II+V+ +G + 
Sbjct: 658 THKGMSLTYSTNELSDTGLRAAGVKSINLKDED---YVVMTEDVNDSDSIIMVTQRGAMK 714

Query: 864 RVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
           R+  N ++ A RA +G+ +      K  R+V+   ++E+
Sbjct: 715 RIDFNVLQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSLTQHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKHEAVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  +     ++    E F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKHEAFYIMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S+  F+ + R  K +    V   ++   L+ V  +  +  I +++ KG  + 
Sbjct: 610 KNGMIKKSSASQFKTT-RFNKPLINMKVKDNDK---LINVVRLETDQLITVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 666 YSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704


>gi|329116178|ref|ZP_08244895.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906583|gb|EGE53497.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
          Length = 819

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/888 (32%), Positives = 441/888 (49%), Gaps = 82/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNVQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R  L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNRETLVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTG +I G   IK AY TG+G +++R  
Sbjct: 182 NLAEVIDAVVYMIDHPKASLDKLMEFLPGPDFPTGGIIQGAEEIKKAYETGKGRVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E   G ++QIVVTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEFETLKGGKQQIVVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  +LN L +YT LQ  ++ NMVA++ Y P +  LI IL +++A R+ ++V+R+
Sbjct: 302 LKKDADAQNVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGLIKILSSYIAHRKNIIVKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 QFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASDNKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L   I     I+ +
Sbjct: 406 ----------KLSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEKELRDLITMLAAIIGN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +    RR+ +      +E       V E+  V+V+  GY+KR 
Sbjct: 456 EATMFNVMKRELREVKKKFANARRSELQVEAETIEINTASLIVEEETFVSVTRSGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSIDEIGK-----RDDDQLVFVEAAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +  +    E    +        T+ G ++R +  D      
Sbjct: 571 KDTGEHLSQTITNYGTDEEVLHV----EIVDQFTKGTYYSVTQLGQIKRFERKDLAPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   + +D I+S+     E+ I L +  G  +RF    +    G  S GV+ 
Sbjct: 627 YRSKSTKYAKIKNDQDRIISISPIFFED-ITLVSHNGYALRFSSQEV-PVQGLKSAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D + S  IV        +    +    + +R+   D  + +       V     
Sbjct: 685 MNLKNDDYIASAFIVQS------DSFFVLTQRGSLKRVAITDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFI-LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
               +ELK K   + L  S KG  K +    F               +   E     +V 
Sbjct: 734 ---LRELKSKPHCVFLADSVKGSLKSSKIDLF---------------TSPEEETEAASVL 775

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            V         S  G +  V +N + ++ R + G  I     D+ V S
Sbjct: 776 EVT--------SKTGQVYEVQLNNLNLSDRTSNGSFISDAISDQEVFS 815



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 31/287 (10%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGN------VRRNKLSD----FIQINRSGKIAMKLDS 680
           T I+    +E    +L  + A   GN      V + +L +    F    RS         
Sbjct: 430 TDIVTLQNEEKELRDLITMLAAIIGNEATMFNVMKRELREVKKKFANARRSELQVEA--E 487

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             EI +     +E   +  T+ G   R            N+  +  I     DQ++ +  
Sbjct: 488 TIEINTASLIVEEETFVSVTRSGYLKRTS------PRSFNASSIDEIGKRDDDQLVFVEA 541

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                A   + +    ++         +  +I        +   I+     E  L  + +
Sbjct: 542 -----AKTTQHLLIFTNLGNVIYRPIHELTDIRWKDTGEHLSQTITNYGTDEEVLHVEIV 596

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK-------INEIGALVAVFPVNDNDQI 853
              ++  +   T     +   R       T  SK        N+   ++++ P+   + I
Sbjct: 597 DQFTKGTYYSVTQLGQIKRFERKDLAPWRTYRSKSTKYAKIKNDQDRIISISPIF-FEDI 655

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            LVS  G  +R    E+ +    + GV   +   D+ + S   ++  
Sbjct: 656 TLVSHNGYALRFSSQEVPVQGLKSAGVKAMNLKNDDYIASAFIVQSD 702


>gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 809

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 292/892 (32%), Positives = 469/892 (52%), Gaps = 91/892 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + + M + +  Y+  +I  RA+PD RDGLKPV RRI++ M   G  ++K + K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG+ ++YDA+ RM+QDW  R +L+E  GN GSVDGDPPAA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV+F PN+D    EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSAIAAELLRDINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E +D  +  +DN    +D LM +I+GPDFPTG +I G  GIK AY TG+G I++R  
Sbjct: 185 NLQEALDAVLMRLDNKSCTVDELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE-LVREKRIVDIADLRDESDRQGYRVVI 312
           + IE+  G++EQI++TEIP++VNKA M+ K+ E  V ++R+  I+++RDESDR G R+V+
Sbjct: 245 TEIEQLKGNKEQIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A  ILN L + T LQ  ++ NM+A++  +P   TL  +L A++  ++E+V RR
Sbjct: 305 ELKKDVPAQGILNFLLKSTDLQVSYNFNMIAIHNRRPMMMTLPLMLDAYIDHQKEIVRRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L +A DR H++ GL  A++ LDEV+  IR S +   A+  ++++            
Sbjct: 365 SQYDLTRAEDRLHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT      ++ E + L   + +   IL 
Sbjct: 413 --------------FGFSEEQAEAIVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILE 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKR 550
              +L+ +IK EL  +K     PR + I   + +++    +    E++VVTV+  GYVKR
Sbjct: 459 DEKKLIRVIKSELNDIKKRFTLPRLSTIEAEIEEIKVTRDVLVPSEEVVVTVTKDGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A    GK      M+D D++     ++T   +L F++ G    + V  LP   
Sbjct: 519 TSLRSHSASN--GKD---FAMKDSDYLLYEANLNTQHHLLLFTNKGHYIYQPVHELPDIR 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ + +I+ ++  E I  ++     E    N+YV  ATK G ++R+ L+D+I    
Sbjct: 574 WKDLGQHISSIVPIDSNEEIIEVIGIETFEQ--PNMYVFTATKEGQIKRSALADYIVTRY 631

Query: 671 SG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S     M L   DE++     T + ++LL+T     +RFP+  +    G  + GV+GI +
Sbjct: 632 SKPIKTMNLKGEDEMIFARLVTDKEEVLLSTNTSYTIRFPMEDL-PVTGVKTAGVKGIIV 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +G+ + ++A++                                                
Sbjct: 691 KEGEYLAAVALLKPD--------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +EQ ++ V+++G  KR    +  + NR+ +G+      K N    +  +  VN 
Sbjct: 706 ------QEQELVIVTQRGAVKRMLLSELELGNRAKRGVVILKELKSNPH-RIFTILVVNF 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +   + ++KG    + V  +  A R + G +   T  D  + S   + ++E
Sbjct: 759 RNTFTIETEKGVQETISVTSLTRADRYSNGSLRIDTEGDGAI-SRAYVEKTE 809



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 14/221 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  ++  TK G   R       + +   S G +  ++   D ++  A +      
Sbjct: 499 VLVPSEEVVVTVTKDGYVKRTS-----LRSHSASNG-KDFAMKDSDYLLYEANLNTQHHL 552

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                     Y               + I+S+    S E  I     +  +    ++ T 
Sbjct: 553 LLFTNKGHYIYQPVHELPDIRWKDLGQHISSIVPIDSNEEIIEVIGIETFEQPNMYVFTA 612

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++G  KR++  D+ ++ R  K I+  ++   +E   ++    V D ++++L ++    I
Sbjct: 613 TKEGQIKRSALADYIVT-RYSKPIKTMNLKGEDE---MIFARLVTDKEEVLLSTNTSYTI 668

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           R P+ ++ +    T GV      + E + +V  ++  +  +
Sbjct: 669 RFPMEDLPVTGVKTAGVKGIIVKEGEYLAAVALLKPDQEQE 709


>gi|58337413|ref|YP_193998.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus NCFM]
 gi|227904046|ref|ZP_04021851.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|58254730|gb|AAV42967.1| DNA topoisomerase IV subunit C [Lactobacillus acidophilus NCFM]
 gi|227868065|gb|EEJ75486.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 816

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 449/883 (50%), Gaps = 93/883 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K
Sbjct: 5   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG YHPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE 
Sbjct: 65  AAKAVGNIMGNYHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTES 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 125 RLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + ++ +P+  L+ LM  ++GPDFPTGA+I+G  GIK AY TGRG I +R  
Sbjct: 185 NLGEVIDATIYLLKHPNASLEDLMNYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++I+   G R++IVVTEIP++VNK+ +++KI E+   K I  IA++RDE+DR G  +VIE
Sbjct: 245 TNIQDIRGHRQEIVVTEIPFEVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E VV +RT
Sbjct: 305 LKKDADSQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEAVVTKRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+               
Sbjct: 365 KFDLNKAEARLEIIQGLIHAMDILDKVIKTIRASKNKSDAKKNLIA-------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT    D +  E   L    ++   +LS 
Sbjct: 411 ------------SYDFTENQAEAIVSLQLYRLTNTDVDALIAEQTKLNKLAEKYRKLLSD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           R  L   I +EL +VK E D PRRT+I E    ++++++  +  E + V +S  GY+KR 
Sbjct: 459 RKTLEKEIIKELSTVKKEFDNPRRTQISEQSAKVEIDEKALVADEKVRVLISRDGYLKRS 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y++      G     + D D V     +ST T++  F++ G V    V  L     
Sbjct: 519 SIRSYQSTDDADNG-----LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L+  E+I  +  F +  ++ N    + AT  G +++ +L++       
Sbjct: 574 KETGQHLSQEIGLSSDEKIIRVFAFDDLNTNSN---FLLATNDGYIKQLELANLQPTRTY 630

Query: 670 --RSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             R+        +   ++ V+      + +I L T     VR+ I+ +   +G  + GV+
Sbjct: 631 RSRAMSAINLKSNNSLLVGVDLIAPNADKEITLFTNRAYAVRYNINEV-PSSGAKAAGVK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D ++   +V +   D  +                                   
Sbjct: 690 SVNLKDDDYIVGYVLVDNKYVDLIK----------------------------------- 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +  ++++G  K+         +R+ +G+      K  +   +VA+ 
Sbjct: 715 --------------VGLITQRGAYKQFDLNLVNKVSRAKRGVLVLRELKT-KPHRIVAIM 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           P   N  + + +     I +  NE  +  R + G  +  T  D
Sbjct: 760 PYAQNHILDITTSSDRHIEIKTNEHPMGDRYSNGSFVVDTTTD 802



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 10/210 (4%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHA 744
                E   +L ++ G   R  I + +        G     L  GD+VI   +++ + + 
Sbjct: 498 ALVADEKVRVLISRDGYLKRSSIRSYQS-TDDADNG-----LPDGDKVIYENTLSTLTNL 551

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               +      + +         +T +  S +   S +  I      +        L  +
Sbjct: 552 YLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLSSDEKIIRVFAFDDLNTNSNFLLAT 611

Query: 805 EKGFGKRTSSYDFRISNRSG-KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
             G+ K+    + + +     + + A ++   N +   V +   N + +I L +++   +
Sbjct: 612 NDGYIKQLELANLQPTRTYRSRAMSAINLKSNNSLLVGVDLIAPNADKEITLFTNRAYAV 671

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           R  +NE+  +     GV   +   D+ +V 
Sbjct: 672 RYNINEVPSSGAKAAGVKSVNLKDDDYIVG 701



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 69/557 (12%), Positives = 182/557 (32%), Gaps = 59/557 (10%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++     R+E+VV    + +NK+     +          +D +  +   +     + 
Sbjct: 244 KTNIQDIRGHRQEIVVTEIPFEVNKSLLVKKIDE--IRLNKEIDGIAEVRDETDRHGLSI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDS--SYTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  ++ +I + +    D   SY        +++ VQ   + IL   L     +  
Sbjct: 302 VIELKKDADSQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEAVVT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +LN     ++    ++ +   L  +IK  + + K++    ++  I          
Sbjct: 362 KRTKFDLNKAEARLEIIQGLIHAMDILDKVIK-TIRASKNK-SDAKKNLIAS-------- 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                       +       V L +YR              +                  
Sbjct: 412 ---------YDFTENQAEAIVSLQLYRLTNTDVDALIAEQTKLNKLAEK--------YRK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S    + KE +  L     +         +S    +     +   E     +    V 
Sbjct: 455 LLSDRKTLEKEIIKELS-TVKKEFDNPRRTQISEQSAK-----VEIDEKALVADEKVRVL 508

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            ++ G ++R+ +  +   + +      L   D+++   T +   ++ L T  G  +  P+
Sbjct: 509 ISRDGYLKRSSIRSYQSTDDA---DNGLPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPV 565

Query: 711 SAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +         G    + I L+  +++I +      + + +  +        Q  L + 
Sbjct: 566 HELVE-TKWKETGQHLSQEIGLSSDEKIIRVFAFDDLNTNSNFLLATNDGYIKQLELANL 624

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRS 823
                   +  S++    +      + L     ++ I   + + +  R +  +   S   
Sbjct: 625 QPTRTYRSRAMSAINLKSNNSLLVGVDLIAPNADKEITLFTNRAYAVRYNINEVPSSGAK 684

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDND-QII---LVSDKGTLIRVPVNEIRIASRATKG 879
             G+++ ++   +    +V    V++    +I   L++ +G   +  +N +   SRA +G
Sbjct: 685 AAGVKSVNLKDDD---YIVGYVLVDNKYVDLIKVGLITQRGAYKQFDLNLVNKVSRAKRG 741

Query: 880 VVIFSTAKD--ERVVSV 894
           V++    K    R+V++
Sbjct: 742 VLVLRELKTKPHRIVAI 758


>gi|148993667|ref|ZP_01823114.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|147927747|gb|EDK78770.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|332073184|gb|EGI83663.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17570]
          Length = 811

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/874 (32%), Positives = 450/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +      AT+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|260101485|ref|ZP_05751722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
 gi|260084699|gb|EEW68819.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
          Length = 818

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/881 (31%), Positives = 442/881 (50%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F   +   N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQIIRVFVFDSLDIKKN---FILATNDGYIKQLELTNLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D  ++ V      +   I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V                                           
Sbjct: 689 KSVNLKDDDYIVGYVLV------------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     L    +  ++++G  K+         +R+ +G+      K  +   +VA+
Sbjct: 706 ------DSKYLDLMHVGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKT-KPHRIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  +  R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLGDRYSNGSFVIDT 799



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 663 SDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F    R+        +K+D +           E   +L ++ G   R  + + +    
Sbjct: 475 KEFASPRRTEISEESAKVKIDEK------ALVADEQVRVLISRDGYLKRSSLRSYQS-TD 527

Query: 719 RNSVGVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               G     L  GD+VI        S   +     +   R  +    +  +      ++
Sbjct: 528 DADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQ 582

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EI    ++  +   +       L +K+ FIL  +  G+ K+    + + + R+ K    T
Sbjct: 583 EIGLDSDEQIIRVFV----FDSLDIKKNFIL-ATNDGYIKQLELTNLQPT-RTYKSRAMT 636

Query: 831 DVSKINEIGALVAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   N+   L+ V  +N  D  +I L + +   +R  ++EI  +     GV   +   D
Sbjct: 637 AIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDD 696

Query: 889 ERVVS 893
           + +V 
Sbjct: 697 DYIVG 701



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 66/510 (12%), Positives = 170/510 (33%), Gaps = 39/510 (7%)

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           P    + L+ +  +   +   ID I +        G   + E++  A  +  L       
Sbjct: 263 PFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIELKKDADAQNILN--YLFK 320

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
             D++   N   + I     +     R+L    +    V  +     RT+      +   
Sbjct: 321 NTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTK-----RTKFDLNKAEARL 375

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQR-RGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           E        +  +  +    R   +   A++    K +      +      L+ ++    
Sbjct: 376 EIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYKFTANQAEAIVSLQLYRLTNTDV 435

Query: 589 VLFFSSLGFVYKE-KVWRLPIGSPQARGKALINILSLNQGE----------RITTIMPFP 637
               +    + K  + +R  +   +   K +I  LS  + E            +  +   
Sbjct: 436 NELIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKID 495

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
           E     +    V  ++ G ++R+ L  +   + +      L   D+++   T +  +++ 
Sbjct: 496 EKALVADEQVRVLISRDGYLKRSSLRSYQSTDDA---DNGLPDGDKVIYENTLSTLSNLY 552

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICY 754
           L T  G  +  P+  +         G    + I L   +Q+I + +    D   +  +  
Sbjct: 553 LFTNHGNVIYRPVHELVE-TKWKETGQHLSQEIGLDSDEQIIRVFVFDSLDIKKNFILAT 611

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGK 810
                 Q  L +         +  ++++    +     + L     ++ I   + + +  
Sbjct: 612 NDGYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAV 671

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QII---LVSDKGTLIRVP 866
           R +  +   S     G+++ ++   +    +V    V+     ++   L++ +G   +  
Sbjct: 672 RYNISEIPTSGSKAVGVKSVNLKDDD---YIVGYVLVDSKYLDLMHVGLITQRGAFKQFK 728

Query: 867 VNEIRIASRATKGVVIFSTAKD--ERVVSV 894
           ++ +   SRA +GV++    K    R+V++
Sbjct: 729 LSLVNKVSRAKRGVLVLRELKTKPHRIVAL 758


>gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
 gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
          Length = 818

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 293/814 (35%), Positives = 422/814 (51%), Gaps = 57/814 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               E+ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+
Sbjct: 8   TPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTEC++  A   + + + +DTVDF  NYDG  +EPV L A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  I+G +GIK+AY  G
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGGRIVGLSGIKDAYENG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++R   
Sbjct: 368 HRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+QT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDRLNGE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I E   IL S S L  ++  EL +V  +  T RRT ++E            +      V 
Sbjct: 462 IDELTGILESDSELRKLVSAELAAVAKKFGTERRTVLLESAGTPVAAVPLEVADTPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R        Q  GG           D +      +    V   +S G + + 
Sbjct: 522 LSSTGLLARTANGEALPQEEGG------ARAKHDLIVSQVAATARADVGVVTSYGRLLRL 575

Query: 602 KVWRLPI------GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            V  LP           A G  +   LS L   E++  +    E         +   T+ 
Sbjct: 576 SVIDLPQLPDTHAAPNLAGGAPVAEFLSGLEADEKVVCLTSLDESSQG-----LALGTEQ 630

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R         N+     + L   D I+  VE  T E D++  T   Q +R+P S +
Sbjct: 631 GVVKRVVPD--YPANKDELEVITLKDGDRIVGAVELRTGEEDLVFITDDTQLLRYPASQV 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + G+ GI L+   +VI  + V  A  D         H +    + SG      
Sbjct: 689 RP-QGRPAGGMAGIKLSDNTKVIHFSAVDPA-RDAFVFTVAGSHGTLDDSVTSGKLTPFD 746

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                    G +  +R     LK + +L ++  G
Sbjct: 747 QYPRKGRATGGVRCQRF----LKGEDVLVLAWAG 776



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 84/276 (30%), Gaps = 39/276 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +  G + R    + +     G  A      D I+S    T   D+ + T  G
Sbjct: 515 DTPCRVLLSSTGLLARTANGEALPQEEGGARAKH----DLIVSQVAATARADVGVVTSYG 570

Query: 704 QCVRFPISAIRVFA-----GRNSVGVRGIS----LAKGDQVISMAIVLHADADY--DERI 752
           + +R  +  +            + G         L   ++V+ +  +  +          
Sbjct: 571 RLLRLSVIDLPQLPDTHAAPNLAGGAPVAEFLSGLEADEKVVCLTSLDESSQGLALGTEQ 630

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +K +         + E IT    D  V          EL+  E+ ++ +++     R 
Sbjct: 631 GVVKRVVPDYPANKDELEVITLKDGDRIVGAV-------ELRTGEEDLVFITDDTQLLRY 683

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS------------DKG 860
            +   R   R   G+    +S   +   ++    V+      + +              G
Sbjct: 684 PASQVRPQGRPAGGMAGIKLSDNTK---VIHFSAVDPARDAFVFTVAGSHGTLDDSVTSG 740

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            L   P ++     RAT GV      K E V+ +  
Sbjct: 741 KL--TPFDQYPRKGRATGGVRCQRFLKGEDVLVLAW 774



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 21/212 (9%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERIC 753
             +L +  G   R             +        AK D ++S +A    AD        
Sbjct: 518 CRVLLSSTGLLARTANGEALPQEEGGAR-------AKHDLIVSQVAATARADVGVVTSYG 570

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-------LKLKEQFILTVSEK 806
            +  +S        DT    +L   + V   +S     E       L    Q +   +E+
Sbjct: 571 RLLRLSVIDLPQLPDTHAAPNLAGGAPVAEFLSGLEADEKVVCLTSLDESSQGLALGTEQ 630

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  KR    D+     +   +    +   + I   V +      + ++ ++D   L+R P
Sbjct: 631 GVVKRV-VPDYPA---NKDELEVITLKDGDRIVGAVELRT--GEEDLVFITDDTQLLRYP 684

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +++R   R   G+     + + +V+    + 
Sbjct: 685 ASQVRPQGRPAGGMAGIKLSDNTKVIHFSAVD 716


>gi|223932481|ref|ZP_03624483.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
 gi|223898935|gb|EEF65294.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
          Length = 805

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 290/874 (33%), Positives = 447/874 (51%), Gaps = 82/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R    IE+    ++
Sbjct: 181 MIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IELK+ +    IL
Sbjct: 241 QIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K+   KA  R 
Sbjct: 301 NYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+     +  ++K+E
Sbjct: 395 VSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +   PR + + +     +++    IV E+  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN-I 621
             G+     RD+D +  L    T   +L F++LG V    V  L     +  G+ L   +
Sbjct: 515 EMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTL 569

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
           ++ +  E I     F E   ++        T++G ++R +  +F        +S K A  
Sbjct: 570 MNFDTSEEII----FAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKL 625

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D+ D +++V     ++ I+L T+ G  +RF I  + +     + GV+ ++L  GD V++
Sbjct: 626 KDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGA-KAAGVKAVNLKDGDVVVA 683

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             I           +  +    + +R+ + +    +  K    V         +ELK K 
Sbjct: 684 AFI------SNTSSVYLLTQRGSFKRMATEEIPVTSRAKRGLQV--------LRELKAKP 729

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +           T   DF +             S  NE      +  V         S
Sbjct: 730 HRVFAAG----PVLTDQGDFDL------------FSTANEDETTSQILHVQ--------S 765

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 766 KTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 799



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI +     +E   +  TK G   R            N+  +  +     DQ+I +    
Sbjct: 478 EIDTASLIVEEETFVSVTKAGYIKRTS------PRSFNASTLEEMGKRDDDQLIFLQNAK 531

Query: 743 HAD-----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                    +    I    H     R          +L N  + E  I  E  +    +E
Sbjct: 532 TTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENF--EE 589

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                V++ G  KR    +F          ++T  +K+ +   +V        D I+L++
Sbjct: 590 GTYFAVTQYGQIKRVERKEFTPWR--TYKSKSTKYAKLKDAEDVVITVSPVVLDDIMLMT 647

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +KG  +R  + E+ I      GV   +    + VV+
Sbjct: 648 EKGYALRFNIEEVPIIGAKAAGVKAVNLKDGDVVVA 683


>gi|171779307|ref|ZP_02920271.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281924|gb|EDT47355.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 819

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 295/893 (33%), Positives = 450/893 (50%), Gaps = 83/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLRDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    ILN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANPRLTELQAEAQTIEIDVASLIVEEDTYVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G+     RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSYNASTVEEIGK-----RDDDELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E    +       ATK+G ++R +  +F     
Sbjct: 571 KDIGEHLSQTITNFATDEYVL----YAEIVDEFGPQTYFAATKYGQIKRFERKEFTPWRT 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL   D+I+        +D+++ T  G  + F I  + V     + GV+ I
Sbjct: 627 YKSKAVKYAKLKKDDDIVVTIAPIALDDVMVITHNGYALHFNIDEVPVVGA-KAAGVKSI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+S  I                  S       G  + + +    ++   N   
Sbjct: 686 NLKDDDFVVSAFIA--------------NTESFFILTQRGSLKRMATELIPAASRANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +                                SK  +   L  + P+
Sbjct: 732 QVLRELKSKPHRVFMA------------------------GPVHASKDVQNIDLFIIEPL 767

Query: 848 NDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +  + + + S+KG   +  + ++ ++ R + G  I     DE V S  RI+
Sbjct: 768 DSDKIETLEVYSNKGNHYQAILEDLTLSERTSNGSFISDKISDEGVFS-ARIK 819



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 22/227 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA--- 739
           EI       +E+  +  TK G   R            N+  V  I     D+++ ++   
Sbjct: 490 EIDVASLIVEEDTYVSVTKGGYIKRTS------PRSYNASTVEEIGKRDDDELVFVSQAK 543

Query: 740 -----IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+   D  V      +      
Sbjct: 544 TTQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTITNFATDEYVLYAEIVDEF---- 599

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              Q     ++ G  KR    +F          +A   +K+ +   +V        D ++
Sbjct: 600 -GPQTYFAATKYGQIKRFERKEFTPWR--TYKSKAVKYAKLKKDDDIVVTIAPIALDDVM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++  G  +   ++E+ +      GV   +   D+ VVS   I  +E
Sbjct: 657 VITHNGYALHFNIDEVPVVGAKAAGVKSINLKDDDFVVS-AFIANTE 702


>gi|161507593|ref|YP_001577547.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
 gi|160348582|gb|ABX27256.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
          Length = 818

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 281/881 (31%), Positives = 442/881 (50%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVTTEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G     + D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G+ L   + L+  E+I  +  F   +   N    + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQIIRVFVFDSLDIKKN---FILATNDGYIKQLELTNLQPTRT 629

Query: 670 --RSGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D  ++ V      +   I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V                                           
Sbjct: 689 KSVNLKDDDYIVGYVLV------------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     L    +  ++++G  K+         +R+ +G+      K  +   +VA+
Sbjct: 706 ------DSKYLDLMHVGLITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKT-KPHRIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  +  R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLGDRYSNGSFVIDT 799



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 663 SDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +F    R+        +K+D +           E   +L ++ G   R  + + +    
Sbjct: 475 KEFASPRRTEISEESAKVKIDEK------ALVADEQVRVLISRDGYLKRSSLRSYQS-TD 527

Query: 719 RNSVGVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               G     L  GD+VI        S   +     +   R  +    +  +      ++
Sbjct: 528 DADNG-----LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQ 582

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           EI    ++  +   +       L +K+ FIL  +  G+ K+    + + + R+ K    T
Sbjct: 583 EIGLDSDEQIIRVFV----FDSLDIKKNFIL-ATNDGYIKQLELTNLQPT-RTYKSRAMT 636

Query: 831 DVSKINEIGALVAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   N+   L+ V  +N  D  +I L + +   +R  ++EI  +     GV   +   D
Sbjct: 637 AIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDD 696

Query: 889 ERVVS 893
           + +V 
Sbjct: 697 DYIVG 701



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 72/568 (12%), Positives = 189/568 (33%), Gaps = 81/568 (14%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++     R+E+V     + +NKA     +          +D +  +   +     + 
Sbjct: 244 KTSIQEIRGHRQEIVTTEIPFDVNKALLVKKIDE--IRLNKEIDGIAEVRDETDRHGLSI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDS--SYTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  +A +I + +    D   SY        +++ VQ   + IL   L     +  
Sbjct: 302 VIELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +LN     ++    ++ +   L  +IK  + + K++    ++  I +        
Sbjct: 362 KRTKFDLNKAEARLEIIQGLIHAMDILDQVIK-TIRASKNK-ADAKKNLIAK-------- 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                       +       V L +YR                         ++      
Sbjct: 412 ---------YKFTANQAEAIVSLQLYR-------------------------LTNTDVNE 437

Query: 591 FFSSLGFVYKE-KVWRLPIGSPQARGKALINILSLNQGE----------RITTIMPFPED 639
             +    + K  + +R  +   +   K +I  LS  + E            +  +   E 
Sbjct: 438 LIAEQSKLNKLAEKYRKLLSDRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEK 497

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
               +    V  ++ G ++R+ L  +   + +      L   D+++   T +  +++ L 
Sbjct: 498 ALVADEQVRVLISRDGYLKRSSLRSYQSTDDA---DNGLPDGDKVIYENTLSTLSNLYLF 554

Query: 700 TKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           T  G  +  P+  +         G    + I L   +Q+I + +    D   +  +    
Sbjct: 555 TNHGNVIYRPVHELVE-TKWKETGQHLSQEIGLDSDEQIIRVFVFDSLDIKKNFILATND 613

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRT 812
               Q  L +         +  ++++    +     + L     ++ I   + + +  R 
Sbjct: 614 GYIKQLELTNLQPTRTYKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRY 673

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QII---LVSDKGTLIRVPVN 868
           +  +   S     G+++ ++   +    +V    V+     ++   L++ +G   +  ++
Sbjct: 674 NISEIPTSGSKAVGVKSVNLKDDD---YIVGYVLVDSKYLDLMHVGLITQRGAFKQFKLS 730

Query: 869 EIRIASRATKGVVIFSTAKD--ERVVSV 894
            +   SRA +GV++    K    R+V++
Sbjct: 731 LVNKVSRAKRGVLVLRELKTKPHRIVAL 758


>gi|322517178|ref|ZP_08070061.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
 gi|322124237|gb|EFX95753.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
          Length = 818

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 288/895 (32%), Positives = 457/895 (51%), Gaps = 87/895 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSC 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE + L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEDDLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +       +++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASMIDEVGK-----RDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + ++ E +       + E+       + ATK G ++R +  +F     
Sbjct: 571 KDLGEHLSQTITNFSKDEEVLYAEILDDFETG----TYLAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I++V     ++ I++ T+ G  +RF    + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKDDSDFIVTVTPIQLDD-IMIITQKGYALRFNADEVPVVGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V ++ +         +    +   ++ +R+ + D  +        +      
Sbjct: 685 INLKDDDTVQAVFVANT------QSFYLLTQRASLKRVATADIPQ--------AKRAGRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVF 845
            +  +ELK K   + T                             V   N  G + +   
Sbjct: 731 LQVLRELKTKPHRVFTAG--------------------------PVFTENAGGEIDLLAT 764

Query: 846 PVNDNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           PV +  Q +LV+   G    V ++ + ++ R + G  I   A  E V S + I +
Sbjct: 765 PVEETPQTLLVTATTGETAEVDLSLLNLSDRTSNGSFIEGLADKE-VFSAKIIEK 818


>gi|148988274|ref|ZP_01819721.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925955|gb|EDK77029.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 811

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/874 (32%), Positives = 449/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +      AT+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|148984585|ref|ZP_01817853.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|148997069|ref|ZP_01824723.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|307067452|ref|YP_003876418.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|147756769|gb|EDK63809.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922976|gb|EDK74091.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|301799849|emb|CBW32423.1| topoisomerase IV subunit A [Streptococcus pneumoniae OXC141]
 gi|306408989|gb|ADM84416.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
          Length = 811

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 280/874 (32%), Positives = 450/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E    I+     +   +      AT+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       +     G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + + ++      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                    +  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
 gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
          Length = 838

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 298/909 (32%), Positives = 467/909 (51%), Gaps = 112/909 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT  ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  EITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 132 LSPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDNP++  + L +II GPDFPTG  I+   GI++AY  G+G I +RGV
Sbjct: 192 NLGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQTQGIEDAYRHGKGIIPVRGV 251

Query: 254 SHIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IE+    +++      I+VTE+PYQV K+  +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 252 VKIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE 
Sbjct: 312 MRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREH 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  Y L + R+R H+L GL IA+ +LD ++ I+R + +  TA+ +  Q        
Sbjct: 372 TLTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQE------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + LSE Q   IL + + RLTGL R  ++ E + L   I E 
Sbjct: 425 -------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELAGRINEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------GLLDMEDEDCIVREDMVV 540
            ++L++R   L ++K+EL S+K +    RRTRIV+              +     +++  
Sbjct: 466 ENLLNNRPEFLKVLKKELRSLKRKYGDQRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTT 525

Query: 541 TVSHLGYVKRV-PLSVYRAQR-----------RGGKGRSGVVMRDEDFVTDLFI--VSTH 586
             S     K   P S++  Q            +G         +  D    ++   +   
Sbjct: 526 ATSDKETEKTTRPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQER 585

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
              +  + +G  Y   V  +P    Q     L+++LS         ++       + +N 
Sbjct: 586 EQFIVITDIGKAYPVNVADVPPIDIQP--IPLLSLLSKTAQRDSKKVVSLFFLSDTTDNK 643

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  T  G ++R +LS+   +   G + +KL  +D + SV    +  ++ +    G+ +
Sbjct: 644 DLLLLTNQGKIKRVQLSELEGLTNRGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGRVL 703

Query: 707 RFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RFP +  +    GRN+ G + +    G+ ++S   +                        
Sbjct: 704 RFPVVDEVIPIMGRNAQGNQALKSRYGETIVSCVTLDE---------------------- 741

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                           + +L VS+ G+GKR +    R++     
Sbjct: 742 -------------------------------NKIVLLVSKLGYGKRLNITGLRMTKLGDI 770

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G +A   +  N+  +L+ +    D+  I L++++     +   ++++ S+  +G  +   
Sbjct: 771 GTQALQFT--NKQDSLLVMIKATDSKDITLLTNQKKTFNIVAKDVKVWSKDGQGDRLIKL 828

Query: 886 AKDERVVSV 894
           +  E +  V
Sbjct: 829 SNQEVIDHV 837



 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               + +L ++ +G  KR    +   ++NR    +    + + +   +L +V    + ++
Sbjct: 639 TTDNKDLLLLTNQGKIKRVQLSELEGLTNRG---LVLIKLKEQD---SLESVSITKEGEE 692

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + +    G ++R PV +  I I  R  +G     +   E +VS   + E++IV
Sbjct: 693 VAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALKSRYGETIVSCVTLDENKIV 745


>gi|228478260|ref|ZP_04062868.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
 gi|228249939|gb|EEK09209.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
          Length = 818

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 288/894 (32%), Positives = 455/894 (50%), Gaps = 87/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+  +TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDNNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +       +++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASTIDEVGK-----RDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +L++ E +       + E+       + ATK G ++R +  +F     
Sbjct: 571 KDLGEHLSQTITNLSKDEEVLYAEILDDFETG----TYLAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I++V     ++ I++ T+ G  +RF    + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKDDSDFIVTVTPIQLDD-IMIITQKGYALRFNADEVPVVGA-KAAGVKT 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V ++ +         +    +   ++ +R+ + D  +        +      
Sbjct: 685 INLKDDDTVQAVFVANT------QSFYLLTQRASLKRVATADIPQ--------AKRAGRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVF 845
            +  +ELK K   + T                             V   N  G + +   
Sbjct: 731 LQVLRELKTKPHRVFTAG--------------------------PVFTENAGGEIDLLAT 764

Query: 846 PVNDNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           PV +  Q +LV+   G    V ++ + ++ R + G  I   A  E V S + I 
Sbjct: 765 PVEETPQTLLVTATTGETAEVDLSLLNLSDRTSNGSFIEGLADKE-VFSAKIIE 817


>gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 803

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 462/887 (52%), Gaps = 101/887 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I S+ + D + + +  Y+  +I  RAIPD+RDGLKPV RRILF M   G  ++K Y 
Sbjct: 2   NENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ RM+QDW LR +L+E  GN GS+D DPPAA RYTE
Sbjct: 62  KSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A+ LL+D+ K+TVDF  N+D +  EP+VL A YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 AKLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++  + VID P+I  D +M+++ GPDFPTG +I+G++GIK AY TGRG I +RG
Sbjct: 182 HNLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGGIIMGKSGIKQAYETGRGKIQVRG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IEK  G RE+I+++EIP++VNK+ ++++I EL  +K++  I ++RDE+DR G R+ I
Sbjct: 242 KVDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRIAI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+++ ILN LY+ T LQ  ++ NMVA++  +P+   +  +L +F++ ++EVV RR
Sbjct: 302 ELKKDANSEGILNFLYKNTDLQIAYNFNMVAISDRRPKLLGVRDMLNSFISHQKEVVTRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y  + A  R H++ GL  A++ LD+V+++IR S N   A+  L+ +            
Sbjct: 362 SQYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      +  E  +L   +K+   IL+
Sbjct: 410 --------------FNFTEAQAEAIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILN 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKR 550
             + L  +IK+EL +++ E    R ++I E + +++    I    E+ V++++  GY+KR
Sbjct: 456 DETHLKKVIKKELKAIQKEFKEERLSQIEEKIAEIKISKEILVPNEETVISITREGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                + A      G + + M+++D +      +     L F+  G        +LP   
Sbjct: 516 TSPRSFNAS-----GVTDIGMKEDDQLLAYHESNLQHITLVFTDKGRYMYIPNHQLPEIR 570

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  G  +  I+ ++  ER+  ++   +  S      ++ AT++G ++ + L DF     
Sbjct: 571 WKDLGTHISQIVPIDSDERVIHMITVTDFNSEVK---ILAATRNGMIKLSSLKDFEVTRY 627

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
               I MKL   D + ++   T    IL+ TK G  + + ++ +    G  + GV+ I+L
Sbjct: 628 SRPLINMKLKGNDVVNTIHVVTGSEHILVVTKQGMSLHYSLTELN-DTGLKAAGVKSINL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D VI+  I+    +                                           
Sbjct: 687 KDDDVVITTEIIYPESS------------------------------------------- 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L  +++G  K+     F  + R+ +G+      K N    ++  + + +
Sbjct: 704 ----------LLIATQRGAMKKMDIQLFEEAKRAQRGLMILKELKSNPH-HIIGAYIITE 752

Query: 850 NDQIILVSD----KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +    LVS+     G         IR   R T G  I       +VV
Sbjct: 753 DMAYTLVSEHHEKHGKT-----KAIRKTDRYTNGSFIIDEKDFGKVV 794



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS--------MAI 740
               E  ++  T+ G   R            N+ GV  I + + DQ+++        + +
Sbjct: 497 LVPNEETVISITREGYIKRTS------PRSFNASGVTDIGMKEDDQLLAYHESNLQHITL 550

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           V      Y     +       + L +  ++ +    ++  +      +   E+K     I
Sbjct: 551 VFTDKGRYMYIPNHQLPEIRWKDLGTHISQIVPIDSDERVIHMITVTDFNSEVK-----I 605

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  +  G  K +S  DF ++ R  + +    +   +    +  +  V  ++ I++V+ +G
Sbjct: 606 LAATRNGMIKLSSLKDFEVT-RYSRPLINMKLKGND---VVNTIHVVTGSEHILVVTKQG 661

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             +   + E+        GV   +   D+ V++ E I   
Sbjct: 662 MSLHYSLTELNDTGLKAAGVKSINLKDDDVVITTEIIYPE 701


>gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 816

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/749 (38%), Positives = 415/749 (55%), Gaps = 52/749 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              ++ E+ I  + + DEMQ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+ 
Sbjct: 9   PPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLR 68

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
             + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+  D PP
Sbjct: 69  PERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPP 128

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  A   + + + +DTVDF PNYDGS QEPV L A YPN+LVNG  GIAVG
Sbjct: 129 AAMRYTECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVG 188

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGEVV     +I +P+ DLD LM  + GPD PTG  I+G  G+++AY TGR
Sbjct: 189 MATNMPPHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIVGLAGVRDAYETGR 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 249 GSFKIRATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLTDR 308

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 309 AHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+  LM R    
Sbjct: 369 RFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDR---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+VQT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 425 ----------------------FDLSDVQTQYILDTPLRRLTKFDRIELESERDRLNAEI 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTV 542
           +E   IL S + L  ++  EL +V  +  TPRRT ++E            +  +   V +
Sbjct: 463 EELTRILDSDAELRKLVSSELATVGKKFGTPRRTVLLESADAPVAAVPLEVADDPCRVLL 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R       A  +  + +        D +      +    V   +S G + + +
Sbjct: 523 SSTGLLARTANGEPFAGEQTKRSK-------HDVIVSAVPATARAEVGAVTSTGRLLRLQ 575

Query: 603 VWRLPI-----GSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP      G+P  A G  +   LSL +GE +  +    E     ++  +   T+ G 
Sbjct: 576 VIDLPQLPESPGTPNLAGGAPIAEFLSLEEGEELICLTTLDE-----SSPGLAIGTEQGV 630

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R         ++     + L   D I+  VE  T E D++  T     +R+P   +R 
Sbjct: 631 VKRVVPD--YPAHKEELEVIGLKEGDRIVGAVELRTGEEDLVFITDNAHLLRYPAGQVRP 688

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             GR + G+ G+ LA   +VIS   V  A
Sbjct: 689 -QGRAAGGMAGVKLAPDAKVISFTAVDPA 716



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 130/411 (31%), Gaps = 61/411 (14%)

Query: 516 RRTR----------IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ------ 559
           RRT+          ++  LLD+++   ++R       +    + R  LS  + Q      
Sbjct: 380 RRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDRFDLSDVQTQYILDTP 439

Query: 560 -RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            RR  K     +  + D +       T        S   + K     L     +  G   
Sbjct: 440 LRRLTKFDRIELESERDRLNAEIEELTR----ILDSDAELRKLVSSELATVGKK-FGTPR 494

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             +L L   +     +P        ++   V  +  G + R    +     ++     K 
Sbjct: 495 RTVL-LESADAPVAAVPL----EVADDPCRVLLSSTGLLARTANGEPFAGEQT-----KR 544

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI----SLA 730
              D I+S    T   ++   T  G+ +R  +  +          N  G   I    SL 
Sbjct: 545 SKHDVIVSAVPATARAEVGAVTSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAEFLSLE 604

Query: 731 KGDQVISMAIVLHADADYD-ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +G+++I +  +  +           +            +  E+  LK    + G +    
Sbjct: 605 EGEELICLTTLDESSPGLAIGTEQGVVKRVVPDYPAHKEELEVIGLKEGDRIVGAV---- 660

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             EL+  E+ ++ +++     R  +   R   R+  G+    ++   +   +++   V+ 
Sbjct: 661 --ELRTGEEDLVFITDNAHLLRYPAGQVRPQGRAAGGMAGVKLAPDAK---VISFTAVDP 715

Query: 850 NDQIILVSDKGT-----------LIRVPVNEIRIASRATKGVVIFSTAKDE 889
               ++ +  GT               P ++     RAT GV      K E
Sbjct: 716 AVDAVVFTVSGTHGTLDDSVQQTAKLTPFDQYPRKGRATGGVRCQRFLKGE 766



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 22/228 (9%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +   + +V     ++    L +  G   R        FAG  +        +K D ++S
Sbjct: 501 SADAPVAAVPLEVADDPCRVLLSSTGLLARTANGE--PFAGEQT------KRSKHDVIVS 552

Query: 738 MA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--- 793
                  A+         +  +         ++    +L   + +   +S E  +EL   
Sbjct: 553 AVPATARAEVGAVTSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAEFLSLEEGEELICL 612

Query: 794 ---KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +   +E+G  KR    D+       + +    + + + I   V +      
Sbjct: 613 TTLDESSPGLAIGTEQGVVKRV-VPDYPAHK---EELEVIGLKEGDRIVGAVELRT--GE 666

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + ++ ++D   L+R P  ++R   RA  G+     A D +V+S   + 
Sbjct: 667 EDLVFITDNAHLLRYPAGQVRPQGRAAGGMAGVKLAPDAKVISFTAVD 714


>gi|225868404|ref|YP_002744352.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701680|emb|CAW99003.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 822

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/891 (31%), Positives = 452/891 (50%), Gaps = 80/891 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 185 NLSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKGRVVVRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G R+QI+VTE+PY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 365 QFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++ E + L   I     I+ +
Sbjct: 409 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGN 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      +E +     + E+  V+V+  GY+KR 
Sbjct: 459 EATMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    V+ L     
Sbjct: 519 SPRSFHASSLEEIGK-----RDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E   S+        T+HG ++R +  + +    
Sbjct: 574 KDIGEHLSQAITNFAADEMVI----YAELIQSFEQGLYASVTQHGLIKRFERKEMMPWRS 629

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A    + D I+++     E+ +LL T+ G  +RF    I    G  + GV+G
Sbjct: 630 YKSKSIKYAKLKAADDRIIAIAPIVMED-LLLVTQQGYALRFSSQEI-PIQGLKAAGVKG 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D ++S   V        +    +    A +R+   D  + +       V     
Sbjct: 688 INLKAQDYLVSACPV------NADSFFVLTQRGALKRVAIADIPQTSRANRGLLV----- 736

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G  K                    D+   +          
Sbjct: 737 ---LRELKTKPHRVFLA---GMVK------------GDTTTGTIDLFTHDSEDTA----- 773

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + Q+ ++S  G   ++ +N + ++ R + G  I  +  D+ V +   I
Sbjct: 774 --SDQQLEVISKTGQQYQLALNSLSLSDRTSNGSFISESISDQEVAAARLI 822



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/544 (13%), Positives = 161/544 (29%), Gaps = 100/544 (18%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R++++V    Y +NKA     +          +  +  +   S          +++  ++
Sbjct: 254 RQQIIVTELPYEVNKAVLVKKIDD--VRVNNKVPGIAEVRDESDRTGLRIAIELKKDADS 311

Query: 425 SDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRL--ARLTGLGRDDIRNELN 478
             I + +    +    Y        + +  Q   + IL   +   +   + R     E  
Sbjct: 312 QTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRSQFDKEKA 371

Query: 479 SLGIEIKE-CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
              + I E  + +LS    ++ +I+                   +   +++       E 
Sbjct: 372 EKRLHIVEGLIRVLSILDEIIALIRASDNK-------------ADAKENLKVSYDFSEEQ 418

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V+         L +YR           +   + D    +  +S         +   
Sbjct: 419 AEAIVT---------LQLYRLTN---TDIVTLQQEEHDLRELITTLS-----AIIGNEAT 461

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +  G  L  + + +Q   I +     E+E+       V  T+ G +
Sbjct: 462 MYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEET------FVSVTQGGYI 515

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R         + S    +     D ++ V+     + +LL T LG  +           
Sbjct: 516 KRTS---PRSFHASSLEEIGKRDDDHLIFVKQAKTTDHLLLFTNLGNVI----------- 561

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                                            R  Y       + +    ++ IT+   
Sbjct: 562 --------------------------------YRPVYELTDLRWKDIGEHLSQAITNFAA 589

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKIN 836
           D  V              ++    +V++ G  KR    +     +   K I+   +   +
Sbjct: 590 DEMVI-----YAELIQSFEQGLYASVTQHGLIKRFERKEMMPWRSYKSKSIKYAKLKAAD 644

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +   ++A+ P+   D ++LV+ +G  +R    EI I      GV   +    + +VS   
Sbjct: 645 DR--IIAIAPIVMED-LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACP 701

Query: 897 IRES 900
           +   
Sbjct: 702 VNAD 705


>gi|320546628|ref|ZP_08040940.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
 gi|320448683|gb|EFW89414.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
          Length = 819

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 290/893 (32%), Positives = 452/893 (50%), Gaps = 83/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    ILN L +YT LQ  ++ NMVA++ Y P +  +I +L ++VA R+E++V R+
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYVAHRKEIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RL+      + NE   L   I     I+  
Sbjct: 408 ------------SYDFSEEQAEAIVTLQLYRLSNTDIVALENEEAELRERITMFKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNASTVEEIGK-----RDDDELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E    +       ATK G ++R +  +      
Sbjct: 571 KDIGEHLSQTITNFATDESVL----YAEIVDEFGPQTYFAATKLGQIKRFERKEISPWRT 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL + D+++   +    +D+++ T  G  + F I  + V     + GV+ I
Sbjct: 627 YKSKAVKYAKLKNDDDMIVTISPIALDDVMVVTHNGYALHFNIDEVPVVGA-KAAGVKSI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+S  I                  S       G  + +++    ++   N   
Sbjct: 686 NLKDDDFVVSTFIA--------------NTESFFILTQRGSLKRMSTDLIPATNRANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +                            A + S   +   L +  P+
Sbjct: 732 QVLRELKSKPHRVFMA------------------------GAVNASNDVQNIDLFSSEPL 767

Query: 848 NDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +  + + + S+KG +    + ++ ++ R + G  I     DE V S  RI+
Sbjct: 768 DSDKIETLEVYSNKGNIYNAILEDLTLSERTSNGSFISDKISDEGVFS-ARIK 819


>gi|195978265|ref|YP_002123509.1| DNA topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974970|gb|ACG62496.1| topoisomerase IV subunit A ParC [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 819

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/891 (31%), Positives = 453/891 (50%), Gaps = 80/891 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVINAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTE+PY+VNKA +++KI ++    R+  IA++RDESDR G R+ IE
Sbjct: 242 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNRVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+
Sbjct: 302 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 QFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++ E + L   I     I+ +
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      +E +     + E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    V+ L     
Sbjct: 516 SPRSFHASSLEEIGK-----RDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E   S+        T+HG ++R +  + +    
Sbjct: 571 KDIGEHLSQAITNFAADEMVI----YAELIQSFEQGLYASVTQHGLIKRFERKEMMPWRS 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A    + D I+++     E+ +LL T+ G  +RF    I    G  + GV+G
Sbjct: 627 YKSKSIKYAKLKAADDRIIAIAPIVMED-LLLVTQQGYALRFSSQEI-PIQGLKAAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D ++S   V        +    +    A +R+   D  + +       V     
Sbjct: 685 INLKAQDYLVSACPV------NADSFFVLTQRGALKRVAIADIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G  K                I   D+   +          
Sbjct: 734 ---LRELKTKPHRVFLA---GMVK------------GDTTIGTIDLFTHDSEDTA----- 770

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + Q+ ++S  G   ++ +N + ++ R + G  I  +  D+ V +   I
Sbjct: 771 --SDQQLEVISKTGQQYQLALNSLSLSDRTSNGSFISESISDQEVAAARLI 819



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 71/544 (13%), Positives = 161/544 (29%), Gaps = 100/544 (18%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++++V    Y +NKA     +          +  +  +   S          +++  ++
Sbjct: 251 KQQIIVTELPYEVNKAVLVKKIDD--VRVNNRVPGIAEVRDESDRTGLRIAIELKKDADS 308

Query: 425 SDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRL--ARLTGLGRDDIRNELN 478
             I + +    +    Y        + +  Q   + IL   +   +   + R     E  
Sbjct: 309 QTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRSQFDKEKA 368

Query: 479 SLGIEIKE-CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
              + I E  + +LS    ++ +I+                   +   +++       E 
Sbjct: 369 EKRLHIVEGLIRVLSILDEIIALIRASDNK-------------ADAKENLKVSYDFSEEQ 415

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V+         L +YR           +   + D    +  +S         +   
Sbjct: 416 AEAIVT---------LQLYRLTN---TDIVTLQQEEHDLRELITTLS-----AIIGNEAT 458

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +  G  L  + + +Q   I +     E+E+       V  T+ G +
Sbjct: 459 MYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEET------FVSVTQGGYI 512

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R         + S    +     D ++ V+     + +LL T LG  +           
Sbjct: 513 KRTS---PRSFHASSLEEIGKRDDDHLIFVKQAKTTDHLLLFTNLGNVI----------- 558

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                                            R  Y       + +    ++ IT+   
Sbjct: 559 --------------------------------YRPVYELTDLRWKDIGEHLSQAITNFAA 586

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKIN 836
           D  V              ++    +V++ G  KR    +     +   K I+   +   +
Sbjct: 587 DEMVI-----YAELIQSFEQGLYASVTQHGLIKRFERKEMMPWRSYKSKSIKYAKLKAAD 641

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +   ++A+ P+   D ++LV+ +G  +R    EI I      GV   +    + +VS   
Sbjct: 642 DR--IIAIAPIVMED-LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACP 698

Query: 897 IRES 900
           +   
Sbjct: 699 VNAD 702


>gi|168485803|ref|ZP_02710311.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|221231636|ref|YP_002510788.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|183570981|gb|EDT91509.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|220674096|emb|CAR68614.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|301793991|emb|CBW36389.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV104]
          Length = 811

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 449/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +       T+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 57.6 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|149010515|ref|ZP_01831886.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|303254051|ref|ZP_07340168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|303260743|ref|ZP_07346702.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303263101|ref|ZP_07349031.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265021|ref|ZP_07350935.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|303267482|ref|ZP_07353333.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|303269834|ref|ZP_07355580.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|307127595|ref|YP_003879626.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 670-6B]
 gi|147764996|gb|EDK71925.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|302598987|gb|EFL66016.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|302635754|gb|EFL66259.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638111|gb|EFL68587.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302640631|gb|EFL71032.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|302642988|gb|EFL73284.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|302645381|gb|EFL75614.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|306484657|gb|ADM91526.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332077267|gb|EGI87729.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17545]
          Length = 811

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 448/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +       T+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 57.6 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
 gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
          Length = 817

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/886 (31%), Positives = 464/886 (52%), Gaps = 94/886 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K 
Sbjct: 2   ENRAEIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ R++QDW  R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  L+ D+ K+TVDF  N+D + +EP V  A YPN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P+HNLGEV+D  V +ID+PD  +  LM+ ++GPDFPTGA++ G  GIK AY TG+G I++
Sbjct: 182 PSHNLGEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAILQGVDGIKKAYETGKGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G +EQIV+ EIPY+VNKA ++ K+ E+   KR+  IA++RDESDR G ++
Sbjct: 242 RSKTRIEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L + T LQ  ++ NMVA++  +P++  ++ +L+A++  ++EV+ 
Sbjct: 302 VVELKKEANAGGILNYLLKNTDLQVAYNFNMVAIDKKRPKQVGIVRMLQAYLDHKQEVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA  R H++ GL  A++ LD+V+  IR S + + A+  L++R          
Sbjct: 362 RRTNYNLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E+Q  AI+ L+L RLT      + NE ++L  +I     I
Sbjct: 412 ----------------FDFTEIQAEAIVSLQLYRLTNTDITALENEADALNKDIMAYNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L S   L  ++K+EL+ VK +  +PR T I + + +  ++ E  I  E+++V+V+  GY+
Sbjct: 456 LGSSQELNKVMKKELIEVKKKYASPRLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     +++ D+   +  ++T   +L F+S G +    +  +  
Sbjct: 516 KRTSLRSYSASKPTEIG-----IKEGDYPIYIQQLNTLNHLLIFTSKGNIIYRPIHEISD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-- 666
              +  G  L   ++    E +  +      E         F TK G +++  +S+++  
Sbjct: 571 LRWKDMGDHLSQNIAFETDETVVKVFGL---EKQLPPATFTFITKEGYIKQTAVSEYVIG 627

Query: 667 --QINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               N+S        + DE+L++    +    D+ L T  G  +R+P+  +       + 
Sbjct: 628 RNYKNKSFSAIKLKTTTDELLNIVYTEKPLSKDVFLVTNRGFGLRYPLDEVPTVGA-KAA 686

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L  GD V++  +V                                         
Sbjct: 687 GVKSINLKDGDYVVNGVLV----------------------------------------- 705

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                    +    +  ++ ++++G  K+ +  DF    R+ +G+      K N    + 
Sbjct: 706 ---------DTTASKAELMILTQRGSVKKMNILDFEPLGRAKRGLLLLRELKKNPH-RVA 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             F  +  D   +++ KG  I +      I+ R + G  I     D
Sbjct: 756 FAFEASKEDNYRILTSKGQEISLSSQSYSISDRYSNGSFILDEVAD 801



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 96/263 (36%), Gaps = 12/263 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G ++R  L  +     +      +   D  + ++     N +L+ T  G  + 
Sbjct: 506 MVSVTKEGYIKRTSLRSYSASKPTEI---GIKEGDYPIYIQQLNTLNHLLIFTSKGNIIY 562

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISM----AIVLHADADYDERICYMKHMSA 760
            PI  I        +G    + I+    + V+ +      +  A   +  +  Y+K  + 
Sbjct: 563 RPIHEISDL-RWKDMGDHLSQNIAFETDETVVKVFGLEKQLPPATFTFITKEGYIKQTAV 621

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
              +I  + +  +          +         K   + +  V+ +GFG R    +    
Sbjct: 622 SEYVIGRNYKNKSFSAIKLKTTTDELLNIVYTEKPLSKDVFLVTNRGFGLRYPLDEVPTV 681

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                G+++ ++   + +   V V       ++++++ +G++ ++ + +     RA +G+
Sbjct: 682 GAKAAGVKSINLKDGDYVVNGVLVDTTASKAELMILTQRGSVKKMNILDFEPLGRAKRGL 741

Query: 881 VIFS-TAKDERVVSVERIRESEI 902
           ++     K+   V+       E 
Sbjct: 742 LLLRELKKNPHRVAFAFEASKED 764


>gi|149007201|ref|ZP_01830865.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
 gi|147761239|gb|EDK68206.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
          Length = 811

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 447/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R  L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREFLVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRTSENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +       T+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 57.6 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|149004065|ref|ZP_01828871.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|149021721|ref|ZP_01835752.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|147757966|gb|EDK64974.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147930182|gb|EDK81168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|301801679|emb|CBW34384.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV200]
 gi|327390206|gb|EGE88549.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA04375]
 gi|332076133|gb|EGI86599.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41301]
          Length = 811

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 448/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +       T+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO]
          Length = 764

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 283/789 (35%), Positives = 455/789 (57%), Gaps = 47/789 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVD----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 ---------------VFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++ +    + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +    G     MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G+ +   + +L+  E I  + P+   +        VF +K+G +++ ++++F  
Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPY---QKIQAEKTFVFISKNGLIKQTRMTEFEP 627

Query: 668 IN---RSGKIAMKLD-SRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                      MKL    DE+++V         D+ L T  G  +R+P++ + V     +
Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA-KA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++L  GD++I+  +VL   A+ D  I  +    A +R+++ +  + +  K   +V
Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743

Query: 782 EGNISEERC 790
              + + R 
Sbjct: 744 MRELKKIRT 752



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 76/556 (13%), Positives = 181/556 (32%), Gaps = 55/556 (9%)

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ++A    ++++V+    Y +NKA     +          +D +  +   S       
Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDE--IRLNKKIDGIAEVRDESDRTGLQI 301

Query: 415 RELMQRSWNASDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRLARLTGLGR 470
              +++  NA  I + +    +    Y        +++  Q   + IL   +     +  
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
              + +L            ++ + S L  +I     S   +          +   ++ D 
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKK----------DAKKNLVDV 411

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E     V+   Y +     +   Q+                  +  I        
Sbjct: 412 FQFTEEQAEAIVTLQLY-RLTNTDITELQKES----------------ESLIAQITELNK 454

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
             S+   ++      L       +  +       + + +  T ++   ED        +V
Sbjct: 455 ILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQED-------VIV 507

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R  L      + S    + +   D +L     +  + +LL T     +  P
Sbjct: 508 SVTREGYVKRTSL---RSYSASKPEEIGMREGDYLLYSGELSTLDHVLLITNKANVIYRP 564

Query: 710 ISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     +++         +L+  + ++++       A+          +  Q R+  
Sbjct: 565 VHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTE 624

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNR 822
            +       +  S ++    E+    + LKE      +  V+ +G G R    D  +   
Sbjct: 625 FEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGA 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVV 881
              G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +GV 
Sbjct: 685 KAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVT 742

Query: 882 IFS-TAKDERVVSVER 896
           +     K   V+S+ R
Sbjct: 743 VMRELKKIRTVLSICR 758


>gi|168493009|ref|ZP_02717152.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577053|gb|EDT97581.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
          Length = 811

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 448/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRTSENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    +E +       ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 515 EIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I  +      +   +       T+ G ++R +  +F        +S K A  
Sbjct: 570 TNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKL 626

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV+ ++L + D    
Sbjct: 627 KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGVKAMNLKEDD---- 680

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              VL +    +    Y+       + +S +    TS                       
Sbjct: 681 ---VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS----------------------- 714

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                       KR       + N+  +   A  V++   +G   +     ++  +++ S
Sbjct: 715 ----------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFSTEVDVNDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 418 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 477

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 531

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 532 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 591

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 592 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|163841149|ref|YP_001625554.1| DNA topoisomerase IV subunit A [Renibacterium salmoninarum ATCC
           33209]
 gi|162954625|gb|ABY24140.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 851

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 292/865 (33%), Positives = 428/865 (49%), Gaps = 114/865 (13%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M         E     + I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRIL
Sbjct: 1   MARRTSPKAPETGDFTENIIDIDVSQEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M +MG+  ++ +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNF
Sbjct: 61  YMMSEMGLHPDRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D  P A  RYTE RL  AA  L D L +D VDF PNYD    +P VL A +PN+LVN
Sbjct: 121 GSLDAGPAA-PRYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPEVLPAAFPNLLVN 179

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATN+  HNL EV+     +I +P++ LD +M  + GPD PTG  I+G  GI
Sbjct: 180 GATGIAVGMATNMAPHNLVEVISAARHLIAHPEVTLDDVMRFVPGPDLPTGGRIVGLDGI 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRGS   R    +E+ +  R  +VVTE+PY V+   ++EKI + V  K++  I+
Sbjct: 240 REAYETGRGSFKTRAKIDVEQLTARRTGLVVTELPYTVSPEKVIEKIKDGVNAKKLQGIS 299

Query: 298 DLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+ D +DR    R+VIELK G +   I+ QLY+ T ++  F +N V L   +P+   L+ 
Sbjct: 300 DIVDLTDRNHGLRLVIELKNGFNPQAIIQQLYKLTPMEDSFGINNVTLVDGQPKTLGLLE 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+ +VA R +VV RRT + L K +DR H++ G+ IA+ ++DEV++IIR S     AR  
Sbjct: 360 LLRVYVAHRIDVVRRRTAFRLGKKKDRLHLVEGMLIAILDIDEVIQIIRTSEETAAARDR 419

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L+                              LSE+Q   ILELRL +LT   R ++  E
Sbjct: 420 LIA--------------------------IYDLSEIQANYILELRLRQLTKYSRIELEKE 453

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL------------ 524
            + L  EI+E   IL+S   L  ++  EL  + ++  TPRRT ++E              
Sbjct: 454 QDELRKEIEELERILNSEPVLRELVSSELAEIAEKYGTPRRTVLLESEAVSPTVAKALAA 513

Query: 525 -----LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                        I  +   V +S  G + R          R     SG   +  D    
Sbjct: 514 ATTPGKATPLALEIADDPCWVLLSSSGQIARTST-------REALSDSGARTK-HDVFKS 565

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTI 633
           +   S    V   +S G + + +V  +P+  P       A G      ++L +GE + + 
Sbjct: 566 VIATSARGEVGAVTSAGRMLRLQVLDMPVLPPTAGLPNLAGGVPAKEFITLLKGESLISF 625

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +P         +  V   TK G V+R   +    +NR     + L  +D +++      +
Sbjct: 626 VPI--------DAVVALGTKQGIVKRV--TPEYPLNREDWEIISLKDKDSVVAAAAAQDD 675

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++++  T+  Q +RF  +A+R   GR + G+ GI LA  D V+S A+V   D        
Sbjct: 676 DELVFITEQAQLLRFSATAVRP-QGRTAGGMAGIKLASNDVVLSFAVVAAGDP------- 727

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                +A    ISG T+ +                               +  G  K + 
Sbjct: 728 -----AAVVVSISGSTDALPG-----------------------------TAPGSAKVSD 753

Query: 814 SYDFRISNRSGKGIRATDVSKINEI 838
             ++    R+  G+RA    K  +I
Sbjct: 754 FSEYPPKGRATGGVRAHRFLKGEDI 778



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 20/257 (7%)

Query: 650 FATKHGNVRRNKL--SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            A K+G  RR  L  S+ +    +  +A                 +   +L +  GQ  R
Sbjct: 485 IAEKYGTPRRTVLLESEAVSPTVAKALAAATTPGKATPLALEIADDPCWVLLSSSGQIAR 544

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADA-DYDERICYMKHMSAQRRL 764
                    + R ++   G          VI+ +      A     R+  ++ +      
Sbjct: 545 T--------STREALSDSGARTKHDVFKSVIATSARGEVGAVTSAGRMLRLQVLDMPVLP 596

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +     +            +  E        +  +   +++G  KR +  ++ + NR  
Sbjct: 597 PTAGLPNLAGGVPAKEFITLLKGESLISFVPIDAVVALGTKQGIVKRVTP-EYPL-NRED 654

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             I +       +  ++VA     D+D+++ ++++  L+R     +R   R   G+    
Sbjct: 655 WEIISLK-----DKDSVVAAAAAQDDDELVFITEQAQLLRFSATAVRPQGRTAGGMAGIK 709

Query: 885 TAKDERVVSVERIRESE 901
            A ++ V+S   +   +
Sbjct: 710 LASNDVVLSFAVVAAGD 726



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 40/274 (14%)

Query: 644 NNLYVVFATKHGNVRRNK----LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           ++   V  +  G + R      LSD     +           D   SV   +   ++   
Sbjct: 529 DDPCWVLLSSSGQIARTSTREALSDSGARTKH----------DVFKSVIATSARGEVGAV 578

Query: 700 TKLGQCVRFPISAIRVFAG-----RNSVGVRG---ISLAKGDQVISMAIVLHADADYDER 751
           T  G+ +R  +  + V          + GV     I+L KG+ +IS  + + A      +
Sbjct: 579 TSAGRMLRLQVLDMPVLPPTAGLPNLAGGVPAKEFITLLKGESLISF-VPIDAVVALGTK 637

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +K ++ +  L   D E I+    DS V    +++        +  ++ ++E+    R
Sbjct: 638 QGIVKRVTPEYPLNREDWEIISLKDKDSVVAAAAAQD--------DDELVFITEQAQLLR 689

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEI---------GALVAVFPVNDNDQIILVSDKGTL 862
            S+   R   R+  G+    ++  + +              V  ++ +   +  +  G+ 
Sbjct: 690 FSATAVRPQGRTAGGMAGIKLASNDVVLSFAVVAAGDPAAVVVSISGSTDALPGTAPGSA 749

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                +E     RAT GV      K E ++ +  
Sbjct: 750 KVSDFSEYPPKGRATGGVRAHRFLKGEDILLLAW 783


>gi|325962999|ref|YP_004240905.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469086|gb|ADX72771.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 835

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 295/858 (34%), Positives = 425/858 (49%), Gaps = 113/858 (13%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + +    + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+ 
Sbjct: 11  ADNTPYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLR 70

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PA
Sbjct: 71  PDRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPA 129

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGM
Sbjct: 130 APRYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGM 189

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL EV+     +I NPD  LD LM  + GPD P+G  I+G  GI++AYATGRG
Sbjct: 190 ATNMAPHNLVEVISAARHLIANPDATLDDLMRFVPGPDLPSGGRIVGLDGIRDAYATGRG 249

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR 
Sbjct: 250 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVDLTDRK 309

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L  +V  R
Sbjct: 310 HGLRLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLLTVYVNHR 369

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM       
Sbjct: 370 IDVVRRRTVFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARARLMS------ 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q   ILELRL +LT   R ++  E + L  EI 
Sbjct: 424 --------------------IYDLTEIQANYILELRLRQLTKYSRIELEKEQDELRREIA 463

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL------------------LDM 527
           E   IL S  RL  ++  EL ++ +E  TPRRT ++E                      +
Sbjct: 464 ELEAILGSEERLRTLVSDELGAIAEEHGTPRRTVLLESEAVSPTIAADLALAAGKKGKAV 523

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                I  +     ++  G + R       A        +G   +  D  T +   S   
Sbjct: 524 PLALEIADDPCWAILTASGQIARTSNQEPLA-------EAGPRTK-HDVFTSVVKTSARG 575

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDES 641
            +   +S G + + +V  +P+  P       A G      L+L +GE +    P  E   
Sbjct: 576 EIAAVTSQGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFAPLDE--- 632

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTT 700
                 +   T  G V+R +      +NR     + L  +D ++ V     ++ +++  T
Sbjct: 633 -----VLAVGTAQGVVKRVQPD--YPLNREDWEIISLKDKDFVVGVAPAGADDAELVFLT 685

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
              Q ++F  +++R   GR + G+ GI LA GD+V+    V   D             +A
Sbjct: 686 SQAQLLKFAAASVRP-QGRTAGGMVGIKLAAGDRVLFFGAVQPKD------------EAA 732

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
               I+G T  +                               +  G  K T+  ++   
Sbjct: 733 VVVTIAGTTGALPG-----------------------------TAPGTAKVTAFSEYPAK 763

Query: 821 NRSGKGIRATDVSKINEI 838
            R+  G+RA    K  + 
Sbjct: 764 GRATAGVRAHRFLKGEDT 781



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 39/267 (14%)

Query: 644 NNLYVVFATKHGNVRRN----KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           ++      T  G + R      L++     +           D   SV   +   +I   
Sbjct: 531 DDPCWAILTASGQIARTSNQEPLAEAGPRTKH----------DVFTSVVKTSARGEIAAV 580

Query: 700 TKLGQCVRFPISAIRVFAG-----RNSVGVRG---ISLAKGDQVISMAIVLHADADYDER 751
           T  G+ +R  +  + V          + GV     ++L KG+ +++ A +    A    +
Sbjct: 581 TSQGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFAPLDEVLAVGTAQ 640

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               +        ++ +  EI SLK+   V G             +  ++ ++ +    +
Sbjct: 641 GVVKRVQPDYP--LNREDWEIISLKDKDFVVGVAPA------GADDAELVFLTSQAQLLK 692

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV---------SDKGTL 862
            ++   R   R+  G+    ++  + +    AV P ++   ++ +         +  GT 
Sbjct: 693 FAAASVRPQGRTAGGMVGIKLAAGDRVLFFGAVQPKDEAAVVVTIAGTTGALPGTAPGTA 752

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE 889
                +E     RAT GV      K E
Sbjct: 753 KVTAFSEYPAKGRATAGVRAHRFLKGE 779



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 90/267 (33%), Gaps = 34/267 (12%)

Query: 650 FATKHGNVRRNKL--SDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCV 706
            A +HG  RR  L  S+ +    +  +A+    + + + +     ++    + T  GQ  
Sbjct: 486 IAEEHGTPRRTVLLESEAVSPTIAADLALAAGKKGKAVPLALEIADDPCWAILTASGQIA 545

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R         AG  +              +  ++V  +       I  +       RL  
Sbjct: 546 RTSNQEPLAEAGPRTK-----------HDVFTSVVKTS---ARGEIAAVTSQGRMLRLQV 591

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV---------SEKGFGKRTSSYDF 817
            D   +  +    ++ G +  +    L   E  +            + +G  KR    D+
Sbjct: 592 MDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFAPLDEVLAVGTAQGVVKRVQP-DY 650

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRA 876
            + NR    I +       +   +V V P   +D +++ ++ +  L++     +R   R 
Sbjct: 651 PL-NREDWEIISLK-----DKDFVVGVAPAGADDAELVFLTSQAQLLKFAAASVRPQGRT 704

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIV 903
             G+V    A  +RV+    ++  +  
Sbjct: 705 AGGMVGIKLAAGDRVLFFGAVQPKDEA 731


>gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 816

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 289/806 (35%), Positives = 423/806 (52%), Gaps = 56/806 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPV L A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G TGI++AY +G
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIVGLTGIRDAYESG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RQHGLRLVIEIKNGFIPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++    
Sbjct: 368 HRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEH--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+QT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSEIQTQYILDTPLRRLTKFDRIELESERDRLNGE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I E   IL S + L  ++  EL +V  +  TPRRT ++E            +  +   V 
Sbjct: 462 IDELTGILESDAELRKLVSSELAAVAKKFGTPRRTVLLESAGTPAPAASLQVADDPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R          R  + +        D +    + +    V   +S G + + 
Sbjct: 522 LSSTGLLARTATGEPLVDGRSRRSK-------HDVIVSAVLTTQRGEVGAVTSSGRLLRL 574

Query: 602 KVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP     A       G  +   LSL   E +  +    E     ++  +   T  G
Sbjct: 575 SVIDLPQLPDTATTPNLAGGAPVAEFLSLEADETLICLTTLDE-----SSPGLALGTLQG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R         N+     + L   D I+   E  T E D++  T   Q +R+P S +R
Sbjct: 630 VVKRVVPD--YPANKEELEVITLREGDRIVGGAELHTGEEDLVFITSDAQLLRYPASQVR 687

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + G+ GI LA+G +VIS   V  A     E + +    S      S  T ++T 
Sbjct: 688 P-QGRPAGGMTGIKLAEGAEVISFTAVDPAG----EAVVFTVAGSHGTLDDSIATAKLTP 742

Query: 775 LKNDSSVEGNISEERCQELKLKEQFI 800
                         RCQ     E  +
Sbjct: 743 FDQYPRKGRATGGVRCQRFLKGEDVL 768



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 88/268 (32%), Gaps = 35/268 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    + +   RS     +    D I+S    TQ  ++   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTATGEPLVDGRS-----RRSKHDVIVSAVLTTQRGEVGAVTSSG 569

Query: 704 QCVRFPISAIRVFAGRNSVGVRG--------ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +       +             +SL   + +I +  +  +           
Sbjct: 570 RLLRLSVIDLPQLPDTATTPNLAGGAPVAEFLSLEADETLICLTTLDESSPGLALGTLQG 629

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT  + D  V G        EL   E+ ++ ++      R  
Sbjct: 630 VVKRVVPDYPANKEELEVITLREGDRIVGG-------AELHTGEEDLVFITSDAQLLRYP 682

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLI 863
           +   R   R   G+    +++  E   +++   V+   + ++ +  G          T  
Sbjct: 683 ASQVRPQGRPAGGMTGIKLAEGAE---VISFTAVDPAGEAVVFTVAGSHGTLDDSIATAK 739

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERV 891
             P ++     RAT GV      K E V
Sbjct: 740 LTPFDQYPRKGRATGGVRCQRFLKGEDV 767


>gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 818

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 296/895 (33%), Positives = 444/895 (49%), Gaps = 102/895 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTE R+ +A   + + + +DTVDF PNYDG  +EPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVV     +I  P+ DLDALM+ + GPD PTG  I+G  GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YETGRGSFKIRATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFNVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++QT+ IL+  L RLT   R ++  E + 
Sbjct: 425 R--------------------------FSLSDIQTQYILDTPLRRLTKFDRIELEAEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  EI+E   IL S + L  ++  EL +V  +    RRT ++E            +  + 
Sbjct: 459 LNEEIEELTRILDSDAELRKLVSAELAAVAKKFGNDRRTLLLESAGTPAAVVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A         G  ++  D +      +    +   +S G 
Sbjct: 519 CRVLLSATGLLARTVNDAPLA-------DDGKRVK-HDVIVSSAPATARGEIGVVTSAGR 570

Query: 598 VYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP    Q      + G  +   +SL   E++  +    E     ++  +   
Sbjct: 571 LLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVSLEDDEQVVCLTTLDE-----SSPGLALG 625

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R         N+     + L   D I+  VE  T + D++  T   Q +R+P 
Sbjct: 626 TEQGVVKRVVPD--YPSNKEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYPA 683

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + G+ G+ + +G +VI    V       D  +  M    A  R    D+ 
Sbjct: 684 AQVRP-QGRPAGGMAGVKVTEGAKVICFTAV-------DPAVDAMVFTVAGSRGTLDDSV 735

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           + T+                                   K T    +    R+  G+R  
Sbjct: 736 QTTA-----------------------------------KLTPFDQYPRKGRATGGVRCQ 760

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
              K  +  +L    P             GT + +P  + R   R   GV +  T
Sbjct: 761 RFLKGEDCLSLAWAGPTPAR----AAQKNGTAVSLPEADPR---RDGSGVSLQRT 808



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 31/236 (13%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISA----IRVFAGRNSVGVRGI----SLAKGD 733
           D I+S    T   +I + T  G+ +R  +             N  G   +    SL   +
Sbjct: 548 DVIVSSAPATARGEIGVVTSAGRLLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVSLEDDE 607

Query: 734 QVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           QV+ +  +  +            +K +         + E IT  + D  V          
Sbjct: 608 QVVCLTTLDESSPGLALGTEQGVVKRVVPDYPSNKEELEVITLKEGDRIVGAV------- 660

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           EL+  ++ ++ +++     R  +   R   R   G+    V++  +   ++    V+   
Sbjct: 661 ELRTGDEDLVFITDDAQLLRYPAAQVRPQGRPAGGMAGVKVTEGAK---VICFTAVDPAV 717

Query: 852 QIILVSDKG-----------TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             ++ +  G           T    P ++     RAT GV      K E  +S+  
Sbjct: 718 DAMVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGVRCQRFLKGEDCLSLAW 773



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 18/181 (9%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +V    IV  A A     I  +       RL   D  ++       ++ G      
Sbjct: 540 DDGKRVKHDVIVSSAPATARGEIGVVTSAGRLLRLNVVDLPQLPEQMPTPNLSGGAPVAE 599

Query: 790 CQELKLKEQFILTVS------------EKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              L+  EQ +   +            E+G  KR    D+     + + +    + + + 
Sbjct: 600 FVSLEDDEQVVCLTTLDESSPGLALGTEQGVVKRV-VPDYPS---NKEELEVITLKEGDR 655

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           I   V +     ++ ++ ++D   L+R P  ++R   R   G+      +  +V+    +
Sbjct: 656 IVGAVELRT--GDEDLVFITDDAQLLRYPAAQVRPQGRPAGGMAGVKVTEGAKVICFTAV 713

Query: 898 R 898
            
Sbjct: 714 D 714


>gi|256825410|ref|YP_003149370.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
 gi|256688803|gb|ACV06605.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
          Length = 823

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/845 (33%), Positives = 420/845 (49%), Gaps = 87/845 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +  +    +  + + +EM +++L YA +VI  RA+PD RDGLKPV RRILFGM ++G+
Sbjct: 8   LQTPTQVADTVIDIDVEEEMSSAFLEYAYSVIYSRALPDARDGLKPVQRRILFGMDELGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ YVK +R+ GEVMGKYHPHG+ AIYDAL R+AQ +S+R+ L++G GNFGS+D D P
Sbjct: 68  RPDRGYVKSSRVVGEVMGKYHPHGDTAIYDALVRLAQPFSMRVPLVDGHGNFGSLD-DGP 126

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  +   L +DTVD  PNYD    +P VL A YPN+LVNG  GIAVG
Sbjct: 127 AASRYTEARMAPAALLMTQTLDEDTVDMVPNYDDQLLQPEVLPAAYPNLLVNGASGIAVG 186

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNI  HN+GEV+     ++DNP   ++ LM  + GPD P G  I+G  GI++AY TGR
Sbjct: 187 MATNIAPHNMGEVIAAARHLLDNPGATVEDLMRFVPGPDLPGGGRIVGLDGIRDAYRTGR 246

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    IE  +  R+ IVVTE+PY V    ++ K+   V+ K++  IAD++D +DR
Sbjct: 247 GSFRTRATVRIENVTPRRKGIVVTELPYLVGPEKVIAKLKTQVQAKKLQGIADVKDLTDR 306

Query: 306 QG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               ++VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L  +V F
Sbjct: 307 HKGLQLVIEVKNGFNPEAVLAQLYKQTPMEESFGINNVALVDGQPRTLGLRELLAVYVDF 366

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT++ L K ++R H++ GL +A+ ++DEV+++IR S +   AR  LMQ     
Sbjct: 367 RCEVVRRRTEFRLRKRQERLHLVEGLLLAILDIDEVIQLIRSSDDTAEARTRLMQ----- 421

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE+Q   ILEL+L RLT   R ++  E + L   I
Sbjct: 422 ---------------------VFDLSELQANYILELQLRRLTKFSRIELETERDDLLRAI 460

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE----DMVV 540
           +E   IL+  + L  ++  EL +V  E  TPRRT ++E             E     + V
Sbjct: 461 EELQAILADEALLRRVVSDELAAVAKEHATPRRTVLLESEAAAAMTPAAPLEVADDPVTV 520

Query: 541 TVSHLGYVKRVPLSVYRAQ--RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +S  G V RVP          R     +G    D D +  +   +   +V   +S G +
Sbjct: 521 VLSATGLVARVPRGEDTPSVLSRDDVRAAGAGRVDHDALASVVASTARGTVGLVTSTGRL 580

Query: 599 YKEKVWRLP-----IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
            +  V  LP          A G  L     L  GER   ++     E + ++  +  AT 
Sbjct: 581 VRLSVVDLPALPGSDALGMAGGAPLAAFTELAGGERPLALVRV---EGAEDSPGLALATA 637

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISA 712
            G V+R +        +     + L   DE++  VE  T E D++  T     + +  S 
Sbjct: 638 GGVVKRVRPD--YPGGKDSFEVITLADGDELVGAVELATGEEDLVFVTDAAALLTYSASL 695

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR+  GV GI + +G +V+  A V  A                            
Sbjct: 696 VRP-QGRSGSGVAGIKVPEGQRVLGFAAVPAA---------------------------- 726

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        SE+            L  ++ G  K T    +    R+  G+R   +
Sbjct: 727 -------------SEDAMVVTVAGSSGALPGTDAGTVKVTPLSAYPAKGRATAGVRCHRL 773

Query: 833 SKINE 837
            K  +
Sbjct: 774 LKGED 778



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 101/269 (37%), Gaps = 29/269 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLD--SRDEILSVETCTQENDILLT 699
           ++   V  +  G V R    +     ++R    A        D + SV   T    + L 
Sbjct: 515 DDPVTVVLSATGLVARVPRGEDTPSVLSRDDVRAAGAGRVDHDALASVVASTARGTVGLV 574

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRG-------ISLAKGDQVISMAIVLHADADYDERI 752
           T  G+ VR  +  +    G +++G+ G         LA G++ +++  V  A+      +
Sbjct: 575 TSTGRLVRLSVVDLPALPGSDALGMAGGAPLAAFTELAGGERPLALVRVEGAEDSPGLAL 634

Query: 753 CYMKHMSAQRRL---ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                +  + R       D+ E+ +L +   + G +      EL   E+ ++ V++    
Sbjct: 635 ATAGGVVKRVRPDYPGGKDSFEVITLADGDELVGAV------ELATGEEDLVFVTDAAAL 688

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV---------SDKG 860
              S+   R   RSG G+    V +   +    AV   +++  ++ V         +D G
Sbjct: 689 LTYSASLVRPQGRSGSGVAGIKVPEGQRVLGFAAVPAASEDAMVVTVAGSSGALPGTDAG 748

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           T+   P++      RAT GV      K E
Sbjct: 749 TVKVTPLSAYPAKGRATAGVRCHRLLKGE 777


>gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
 gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
          Length = 847

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 292/809 (36%), Positives = 437/809 (54%), Gaps = 50/809 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I + S  + M   +  YA  VIL RAIPD RDGLKPV RRIL+ M Q G   +K Y K
Sbjct: 4   NQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG++AIY+ + RMAQ W +R +LI+G GNFGS+D DPPAA RYTE 
Sbjct: 64  SAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYTES 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A+ LL D+ KDTV F PNYD S Q+P VL +R+PN+LVNG  GIAVG AT+IPTH
Sbjct: 124 RLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIPTH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  VA + NP+I LD LM+ ++GPDFPTG ++ G +GI+ A+ TGRG  +IRG 
Sbjct: 184 NLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIRGK 243

Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-----QG 307
           +H+E+  G + ++IVV+EIPY+V K+ ++ +I ELV E++I     +RDE+ R     + 
Sbjct: 244 THVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQKK 303

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+++++ A    ILN LY+ T LQ  ++ NM  ++     +  L  +L A++  ++E
Sbjct: 304 VRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDHQKE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV  R +Y L++ + R H++ GL  A + L ++V  I  S +   A++ +M++       
Sbjct: 364 VVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEK------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 ++ Q  AIL ++LA LT L    +  EL +L  EI+E 
Sbjct: 417 -------------------YGFTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEEL 457

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
             IL+S  +L+ +I  EL  +K +    R T I      + ++    I  ED +VT+++ 
Sbjct: 458 KSILASEKKLIQVITGELNEIKKKYAEERLTEIQGEIEEIKIDIAMQINAEDCIVTLTNE 517

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR     +++    G       +++ D V      +T  + LFF+  G  +   V  
Sbjct: 518 GYIKRTSPRSFKS---VGGTLETCGVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVNA 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            P    +  G AL+NI+ L + +RI         E+    LYV   +K+G +++  LS++
Sbjct: 575 FPDDKWKDIGSALVNIIPLEKNQRIVGFTIV---ENFKQPLYVYHVSKNGLMKKTALSEY 631

Query: 666 IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                S  +A KL    DE ++V    +   IL  TK G  +RF  S +    GR S GV
Sbjct: 632 ETNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSA-TGRASSGV 690

Query: 725 RGISLAKGDQVISMAIVLHAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + I+LA GD VI+M  +   D        A+   +   +  +  Q R   G         
Sbjct: 691 KAIALAPGDDVITMLPIEEVDSRAFSLLTAEGVVKRTAIGAIPLQARAGKGVQLIRKRKN 750

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSE 805
           N   +     EE       + ++ L  +E
Sbjct: 751 NPHELVAMFLEETVYAWTSQNEWTLVETE 779



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 104/289 (35%), Gaps = 17/289 (5%)

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L     +   + L  I    +  +I   M    ++       +V  T  G ++R     
Sbjct: 474 ELNEIKKKYAEERLTEIQGEIEEIKIDIAMQINAED------CIVTLTNEGYIKRTSPRS 527

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG- 723
           F  +  +      +   D +         +  L  T+ G+     ++A         +G 
Sbjct: 528 FKSVGGT-LETCGVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAF-PDDKWKDIGS 585

Query: 724 --VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
             V  I L K  +++   IV +            K+   ++  +S      +S    + +
Sbjct: 586 ALVNIIPLEKNQRIVGFTIVENF-KQPLYVYHVSKNGLMKKTALSEYETNRSSALVAAKL 644

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +G   E     +  +   IL  ++ G G R    +   + R+  G++A  ++  +    +
Sbjct: 645 KGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSATGRASSGVKAIALAPGD---DV 701

Query: 842 VAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + + P+ + D     L++ +G + R  +  I + +RA KGV +    K+
Sbjct: 702 ITMLPIEEVDSRAFSLLTAEGVVKRTAIGAIPLQARAGKGVQLIRKRKN 750



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 37/231 (16%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGR-NSVGVRGISLAKGDQV---ISMAIVL 742
                 E+ I+  T  G   R    + +   G   + GV+     +GD+V   +      
Sbjct: 502 AMQINAEDCIVTLTNEGYIKRTSPRSFKSVGGTLETCGVK-----EGDRVRYFMETNTSH 556

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            A     +   +   ++A       D                I      E   +  ++  
Sbjct: 557 TALFFTQDGKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQRIVGFTIVENFKQPLYVYH 616

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV------ 856
           VS+ G  K+T+  ++                + N   ALVA      +D+ + V      
Sbjct: 617 VSKNGLMKKTALSEY----------------ETNRSSALVAAKLKGGDDEFMNVFVADEA 660

Query: 857 ------SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                 +  G  IR   +E+    RA+ GV   + A  + V+++  I E +
Sbjct: 661 GAILGATKDGMGIRFQRSEVSATGRASSGVKAIALAPGDDVITMLPIEEVD 711


>gi|19745974|ref|NP_607110.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS8232]
 gi|73921621|sp|Q8P1B3|PARC_STRP8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|19748135|gb|AAL97609.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes MGAS8232]
          Length = 819

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
 gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
          Length = 813

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 292/836 (34%), Positives = 419/836 (50%), Gaps = 95/836 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  V +  EM+ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+  ++ +V
Sbjct: 17  DGRVIDVDVAAEMRGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMREMGLRSDRPHV 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE-RYT 131
           KCAR+ G+VMGK HPHG+ AIYDAL RMAQ +++ L L++G GNFGS+ GD P A  RYT
Sbjct: 77  KCARVVGDVMGKLHPHGDMAIYDALVRMAQPFAMWLPLVDGHGNFGSLGGDDPPAAYRYT 136

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+  AA  +  DL +D VDF PNYDG   EPVVL A +PN+LVNG  GIAVGMATN+P
Sbjct: 137 ECRMTAAAEAMTADLDEDVVDFAPNYDGQETEPVVLPAAFPNLLVNGASGIAVGMATNMP 196

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV     +++NP   LD LM  + GPD PTG  I+G  G++ AYATGRGS  +R
Sbjct: 197 PHNLGEVVAAARYLLENPQASLDELMRWVPGPDLPTGGEIVGLDGVREAYATGRGSFRMR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
             + IE+  G R+ IVVTE+PY V    ++ +I +LV  K++  IAD+RD +DR    RV
Sbjct: 257 ATARIEEVRGRRKGIVVTELPYGVGPERVVARIKDLVSAKKLAGIADVRDLTDRHHGLRV 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+++G     +L+QLY+ T L+  F+VN VAL   +P    L  +L+ +V  R EV  
Sbjct: 317 VIEVRQGFDPQAVLDQLYKLTPLEESFAVNNVALVDGQPRTLGLADLLQVYVGHRIEVTR 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   +   + H++ G   A+ ++D V+ IIR S +   AR  LM+           
Sbjct: 377 RRSAFRKKRREAQLHIVEGRLRAIVDIDRVIAIIRASDDTAQARDALME----------- 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  L+EVQ   IL+L L RLT   + ++  E + L  +I    DI
Sbjct: 426 ---------------TFGLTEVQANDILDLPLRRLTKFSKIELEAERDELRRDIASLGDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S  RL  ++  EL +V ++  TPRRTR+   +G         I      V +S  G +
Sbjct: 471 LGSEQRLRAVVSAELAAVAEQFATPRRTRLTADDGSPVTSRPLEIPDSPCCVVLSATGLL 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
            R     + +    G           D + D   V+T   V   +S G V +  V  LP 
Sbjct: 531 ARTTGPGFPS----GDADRAR----HDAIADAVEVTTRGDVGLITSQGRVLRLPVLDLPS 582

Query: 609 GSPQ-----ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                    A G  +  +L L  GE +  + P  E       L VV AT+ G V+R   S
Sbjct: 583 LDDTGPVSLAGGLPVSEVLGLEAGEELVGLTPVSE------QLDVVLATRSGVVKRV--S 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +   +     + L   D ++   +     ++++L T   Q + FP++ +R      + 
Sbjct: 635 GRMPERKPDASIIALRPGDRVVGARSVRTGRDELVLITSDAQLLHFPVAELRPQGF-AAA 693

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV GI L+ G  VI  + V  A      R   +  ++     + G               
Sbjct: 694 GVAGIHLSDGASVIFFSAVDPA------RPAVVVTIAGASAALPG--------------- 732

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                ++ G  K T   +F    R  +G+R     +  + 
Sbjct: 733 ---------------------TQAGSAKVTRFSEFPGKGRGTRGVRCHRFLRGEDT 767



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 21/223 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG-------ISLAKGDQ 734
           D I      T   D+ L T  G+ +R P+  +        V + G       + L  G++
Sbjct: 549 DAIADAVEVTTRGDVGLITSQGRVLRLPVLDLPSLDDTGPVSLAGGLPVSEVLGLEAGEE 608

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ +  V       ++    +   S   + +SG   E     +  ++         + ++
Sbjct: 609 LVGLTPV------SEQLDVVLATRSGVVKRVSGRMPERKPDASIIALRPGDRVVGARSVR 662

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ++ ++           + R    +  G+    +S    +    AV P      + 
Sbjct: 663 TGRDELVLITSDAQLLHFPVAELRPQGFAAAGVAGIHLSDGASVIFFSAVDPARPAVVVT 722

Query: 855 LV--------SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +         +  G+      +E     R T+GV      + E
Sbjct: 723 IAGASAALPGTQAGSAKVTRFSEFPGKGRGTRGVRCHRFLRGE 765



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS--KINEIGALVAVFPVNDN-DQ 852
           ++  ++  +  G  KR S              R  D S   +     +V    V    D+
Sbjct: 617 EQLDVVLATRSGVVKRVS---------GRMPERKPDASIIALRPGDRVVGARSVRTGRDE 667

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ++L++    L+  PV E+R    A  GV     +    V+
Sbjct: 668 LVLITSDAQLLHFPVAELRPQGFAAAGVAGIHLSDGASVI 707


>gi|55820668|ref|YP_139110.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMG
           18311]
 gi|55822559|ref|YP_141000.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|55736653|gb|AAV60295.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus LMG
           18311]
 gi|55738544|gb|AAV62185.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus
           CNRZ1066]
          Length = 839

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/883 (31%), Positives = 446/883 (50%), Gaps = 82/883 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 23  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 82

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 83  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 142

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 143 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 202

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 203 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 262

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 263 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 322

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 323 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARS 382

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 383 KFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENL---------------- 426

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE  +L  +I     I+  
Sbjct: 427 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGD 476

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  +K +    RR+ +       +++    IV E+  V+++  GYVKR 
Sbjct: 477 ERTLFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 536

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A +    G+     RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 537 SPRSFNASKIEEVGK-----RDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 591

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + ++ E +       + E+       +  TK G ++R +  +F     
Sbjct: 592 KDLGEHLSQTITNFSKDEEVLYAEILDDFETG----TYLATTKLGQIKRFERKEFTPWRT 647

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL    +++   T  Q +DI++ T+ G  +RF    + V     +VGV+ I
Sbjct: 648 YKSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGA-KAVGVKAI 706

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+V ++ +          +   +K               + +     +       
Sbjct: 707 NLKDDDKVQAVFVANTQSFYLLTQRASLKR--------------VATSDIPRAKRAGRGL 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   + T                              ++       +   PV
Sbjct: 753 QVLRELKTKPHRVFTAG-------------------------PVFTENAGAEIDLLATPV 787

Query: 848 NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +  QI+ +++  G    V ++ + ++ R + G  I   A  E
Sbjct: 788 EETPQILFVIATTGETAEVDLSLLNLSERTSNGSFIEGLADKE 830



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 33/282 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG------NVRRNKLSDFIQI----NRSGKIAMKLDS 680
           T I+    +E++        A   G      NV + +L D  +      RS   A     
Sbjct: 451 TDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGNDRRSELQAETKTI 510

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---- 736
             EI +     +E   +  T+ G   R            N+  +  +     D +I    
Sbjct: 511 --EIDTASLIVEEETYVSITRGGYVKRTS------PRSFNASKIEEVGKRDDDDLILVQQ 562

Query: 737 ----SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  ++    A+   R  +       + L    ++ IT+   D  V      +  + 
Sbjct: 563 AKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAEILDDFET 622

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   L  ++ G  KR    +F    R+ K          +E   +V V P+  +D 
Sbjct: 623 -----GTYLATTKLGQIKRFERKEFTPW-RTYKSKSVKYGKLKDESDVIVTVTPIQLDD- 675

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I++++ KG  +R   +E+ +      GV   +   D++V +V
Sbjct: 676 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAV 717


>gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 816

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 288/813 (35%), Positives = 424/813 (52%), Gaps = 56/813 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +MG+
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + +DTVDF+ NYDG  QEPVVL A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G  GIK+AYA G
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGGRIVGLGGIKDAYAAG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    IE  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+  LM+R   
Sbjct: 368 HRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+QT+ IL+  L RLT   R ++  E + L  E
Sbjct: 425 -----------------------FSLSEIQTQYILDTPLRRLTRFDRIELETERDKLSQE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I E   IL S + L  ++  EL +V  +  T RRT ++E            +  +   V 
Sbjct: 462 IAELTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQVASVPLEVADDPCQVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R   +    Q    +          D +      +    V   +S G + + 
Sbjct: 522 LSSTGLLARTANAEPIEQTEDAR------RTKHDAIVSAVPATARGDVGAVTSAGRLLRL 575

Query: 602 KVWRLPI------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP           + G  +   L+L   E++  +    E+      L +   T  G
Sbjct: 576 SVIDLPQLPDTHAAPNLSGGAPVAEFLTLEADEQLICLTTLDEEA-----LGLAIGTLQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R         N+     + L   D I+   +  T E D++  T   Q +R+P +++R
Sbjct: 631 VVKRVVPD--YPANKDELEVITLKDGDRIVGATQLRTGEEDLVFITSDAQLLRYPAASVR 688

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + G+ G+ L +G  V+S   V  +     +   +    S      S  T ++T 
Sbjct: 689 P-QGRPAGGMAGVKLTEGATVLSFTAVDPS----KDAAVFTVAGSHGTLDDSERTWKLTP 743

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                         RCQ   LK + +L  +  G
Sbjct: 744 FDQYPRKGRATGGVRCQRF-LKGEDVLVFAWAG 775



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 87/273 (31%), Gaps = 34/273 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ I+     +        D I+S    T   D+   T  G
Sbjct: 515 DDPCQVLLSSTGLLARTANAEPIEQTEDARRTKH----DAIVSAVPATARGDVGAVTSAG 570

Query: 704 QCVRFPISAIRVFAGRNSVGVRG--------ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +      ++             ++L   +Q+I +  +              
Sbjct: 571 RLLRLSVIDLPQLPDTHAAPNLSGGAPVAEFLTLEADEQLICLTTLDEEALGLAIGTLQG 630

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT    D  V          +L+  E+ ++ ++      R  
Sbjct: 631 VVKRVVPDYPANKDELEVITLKDGDRIVGAT-------QLRTGEEDLVFITSDAQLLRYP 683

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL-------I 863
           +   R   R   G+    +++      +++   V+ +    + +     GTL        
Sbjct: 684 AASVRPQGRPAGGMAGVKLTEG---ATVLSFTAVDPSKDAAVFTVAGSHGTLDDSERTWK 740

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             P ++     RAT GV      K E V+    
Sbjct: 741 LTPFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 773



 Score = 46.1 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 71/230 (30%), Gaps = 21/230 (9%)

Query: 679 DSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +  ++ SV     ++   +L +  G   R   +                   K D ++S
Sbjct: 501 SAGSQVASVPLEVADDPCQVLLSSTGLLARTANAEPIEQTE-------DARRTKHDAIVS 553

Query: 738 MA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL- 795
                   D         +  +S        DT    +L   + V   ++ E  ++L   
Sbjct: 554 AVPATARGDVGAVTSAGRLLRLSVIDLPQLPDTHAAPNLSGGAPVAEFLTLEADEQLICL 613

Query: 796 ----KEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               +E   L + + +G  KR    D+     +   +    +   + I     +      
Sbjct: 614 TTLDEEALGLAIGTLQGVVKRV-VPDYPA---NKDELEVITLKDGDRIVGATQLRT--GE 667

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + ++ ++    L+R P   +R   R   G+      +   V+S   +  S
Sbjct: 668 EDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLTEGATVLSFTAVDPS 717


>gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 818

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 296/814 (36%), Positives = 423/814 (51%), Gaps = 57/814 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               E+ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +MG+
Sbjct: 8   TPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+ +IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTEC++  A   + + + +DTVDF  NYDG  +EPV L A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNLGEV+     +I  P+ DL+ALM  + GPD PTG  I+G +GIK+AYA G
Sbjct: 188 GMATNMAPHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGGRIVGLSGIKDAYANG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQPLTMGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM+R   
Sbjct: 368 HRFEVVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSEVQTQYILDTPLRRLTRFDRIELESERDRLTGE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I E   IL S S L  ++  EL +V  +  T RRT ++E            +  +   V 
Sbjct: 462 IDELTGILESDSALRKLVSAELAAVAKKFGTERRTVLLESAGTSVAAVPLEVADDPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R           GG           D +      +    V   +S G + + 
Sbjct: 522 LSSTGLLARTANGDPLPVEEGG------ARAKHDVIVSQVAATARADVGAVTSYGRLLRL 575

Query: 602 KVWRLPI------GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            V  LP           A G  +   LS L   E +  ++   E         +   T+ 
Sbjct: 576 AVIDLPQLPDTAAAPNLAGGAPVSEFLSGLEADETVVCLLSLDESSQG-----LALGTEQ 630

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R         N+     + L   D I+  VE  T E D++  T   Q +R+P   +
Sbjct: 631 GVVKRVVPD--YPANKDELEVITLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYPAGQV 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + G+ GI LA+  +VI  + V  A  D         H +    + SG      
Sbjct: 689 RP-QGRPAGGMAGIKLAENAKVIHFSAVDPA-RDAVVFTVAGSHGTLDDSVRSGKLTPFD 746

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                    G +  +R     LK + +LT++  G
Sbjct: 747 QYPRKGRATGGVRCQRF----LKGEDVLTLAWAG 776



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 92/271 (33%), Gaps = 29/271 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    D + +   G  A      D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANGDPLPVEEGGARAKH----DVIVSQVAATARADVGAVTSYG 570

Query: 704 QCVRFPISAIRVFAGRNSV----GVRGIS-----LAKGDQVISMAIVLHADADY--DERI 752
           + +R  +  +       +     G   +S     L   + V+ +  +  +          
Sbjct: 571 RLLRLAVIDLPQLPDTAAAPNLAGGAPVSEFLSGLEADETVVCLLSLDESSQGLALGTEQ 630

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +K +         + E IT  + D  V          EL+  E+ ++ +++     R 
Sbjct: 631 GVVKRVVPDYPANKDELEVITLKEGDRIVGAV-------ELRTGEEDLVFITDDAQLLRY 683

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL---IR----V 865
            +   R   R   G+    +++  ++    AV P  D     +    GTL   +R     
Sbjct: 684 PAGQVRPQGRPAGGMAGIKLAENAKVIHFSAVDPARDAVVFTVAGSHGTLDDSVRSGKLT 743

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P ++     RAT GV      K E V+++  
Sbjct: 744 PFDQYPRKGRATGGVRCQRFLKGEDVLTLAW 774



 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 22/229 (9%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +   + +V     ++    L +  G   R             +        AK D ++S
Sbjct: 501 SAGTSVAAVPLEVADDPCRVLLSSTGLLARTANGDPLPVEEGGAR-------AKHDVIVS 553

Query: 738 -MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE---- 792
            +A    AD         +  ++        DT    +L   + V   +S     E    
Sbjct: 554 QVAATARADVGAVTSYGRLLRLAVIDLPQLPDTAAAPNLAGGAPVSEFLSGLEADETVVC 613

Query: 793 ---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L    Q +   +E+G  KR    D+     +   +    + + + I   V +     
Sbjct: 614 LLSLDESSQGLALGTEQGVVKRV-VPDYPA---NKDELEVITLKEGDRIVGAVELRT--G 667

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            + ++ ++D   L+R P  ++R   R   G+     A++ +V+    + 
Sbjct: 668 EEDLVFITDDAQLLRYPAGQVRPQGRPAGGMAGIKLAENAKVIHFSAVD 716


>gi|139473929|ref|YP_001128645.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes str.
           Manfredo]
 gi|209559259|ref|YP_002285731.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
 gi|134272176|emb|CAM30421.1| topoisomerase IV subunit A [Streptococcus pyogenes str. Manfredo]
 gi|209540460|gb|ACI61036.1| Topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
          Length = 819

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|322372519|ref|ZP_08047055.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
 gi|321277561|gb|EFX54630.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
          Length = 818

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 284/893 (31%), Positives = 456/893 (51%), Gaps = 84/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+  +KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKDKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +       +++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASTIDEVGK-----RDDDDLILVQQAKTTQHLLMFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +L++ E +       + E+       + ATK G ++R +  +F     
Sbjct: 571 KDLGEHLSQTITNLSKDEEVLYAEILDDFEAG----TYLAATKLGQIKRFERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D+ D I++V     ++ +++ T+ G  +RF    + V     + GV+ 
Sbjct: 627 YKSKSVKYAKLKDASDCIVTVTPIQLDD-VMIITQKGYALRFNADEVPVVGA-KATGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D V ++ +         +    +   ++ +R+ + D  +        +      
Sbjct: 685 INLKDDDTVQAVFVANT------QSFYLLTQRASLKRVATADIPQ--------AKRAGRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   + T                  N  G+               L+A   
Sbjct: 731 LQVLRELKTKPHRVFTAG-----------PVFTENSGGEI-------------DLLATLA 766

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                 +++ +  G    V ++ + ++ R + G  I   A  E  V   +I E
Sbjct: 767 EEAPQTLLVTATTGETAEVDLSLLNLSERTSNGSFIEGLADKE--VFAAKIIE 817


>gi|315653531|ref|ZP_07906451.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
 gi|315488893|gb|EFU78535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
          Length = 831

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 445/855 (52%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLTFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D +  
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLT----- 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|116511813|ref|YP_809029.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107467|gb|ABJ72607.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 824

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 271/890 (30%), Positives = 460/890 (51%), Gaps = 79/890 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+++R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIIKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +   ++E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G+     RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDVRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQ 667
           +  G+ L   L + +  E++  +        ++    +V  T++G ++   R   S +  
Sbjct: 571 KDIGEHLSQSLSNFSSDEKVIYVQIV----DAFAGENLVVVTRNGQIKQIERESFSPWRT 626

Query: 668 INRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                    KL    DEI+ +      + +++ ++ G  +RF +  + V   R + GV+ 
Sbjct: 627 YRSKSTPYAKLKGNDDEIVLISPVQFTD-LMIISENGYALRFNLDDVPVLGAR-AAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D++ +   V         +  ++K               + +    ++   N  
Sbjct: 685 MNLKNDDKIKAAFFVNSNSWYLLTQRAFIKR--------------VKTEDIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVS-EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +  + LK     +            ++  +                 +++      A  
Sbjct: 731 LQVLRTLKTNNHTVFAAGLINSTADLSALTE-----------------ELDLFSQAKAPA 773

Query: 846 PVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 774 TKETDEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|312875591|ref|ZP_07735592.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912647|ref|ZP_08175030.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
 gi|311088845|gb|EFQ47288.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325478068|gb|EGC81197.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
          Length = 831

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 445/855 (52%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLTFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D +  
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLT----- 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|309805614|ref|ZP_07699656.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308165052|gb|EFO67293.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 831

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 445/855 (52%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLTFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D +  
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLT----- 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|269794918|ref|YP_003314373.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
 gi|269097103|gb|ACZ21539.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
          Length = 824

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 283/848 (33%), Positives = 406/848 (47%), Gaps = 103/848 (12%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  + +  EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M  MG+  ++ 
Sbjct: 15  DFTEKIVDIDVAQEMEGSFLEYAYSVIYARALPDARDGLKPVQRRILFQMSDMGLRPDRG 74

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ GEVMGK HPHG+ AIYDAL RMAQ +SLRL +++G GNFGS+D D PAA RY
Sbjct: 75  HVKSARVVGEVMGKLHPHGDTAIYDALVRMAQPFSLRLPMVDGHGNFGSLD-DGPAAPRY 133

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  AA  +   L +D VDF PNYD    +P VL A  PN+LVNG  GIAVGMATN+
Sbjct: 134 TEARLAPAALVMTTGLDEDVVDFVPNYDNKLVQPEVLPAAIPNLLVNGASGIAVGMATNL 193

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL EVV     ++ NP   L+ LM  + GPD PTG  I+G  GI++AY TGRGS   
Sbjct: 194 APHNLIEVVAAARFLVANPKASLEDLMRFVPGPDLPTGGKIVGLEGIRDAYRTGRGSFKT 253

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    +E  +  R+ +VVTE+PY V    ++EKI E V+ K++  I  + D +DR  G R
Sbjct: 254 RATVRVENVTPKRKGLVVTELPYLVGPEKVIEKIKEGVQAKKLAGITAVTDLTDRSHGLR 313

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K G + + +L QLYRYT ++  F +N VAL   +P    L  +L  +V  R +VV
Sbjct: 314 LVIEIKTGFNPEAVLEQLYRYTPMEDSFGMNNVALVDGQPRTLGLREMLSVWVDHRIDVV 373

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L K  DR H++ GL +A+ ++DEV+++IR S + +TAR  L +          
Sbjct: 374 RRRSQFRLTKRLDRLHLVEGLLLAIVDIDEVIQVIRSSDDADTARGRLRE---------- 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q+  ILELRL RLT   R ++  E ++L  EI++   
Sbjct: 424 ----------------VFDLSEAQSEYILELRLRRLTKFSRIELEKEQSALVEEIEQLRA 467

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-------------DMEDEDCIVRE 536
           IL   + L  ++  E+  V     TPRRT +++                       I   
Sbjct: 468 ILGDDALLRRVVSDEMAEVAKVYGTPRRTILLDSAGGGVTGLPGPSSPRGAPVSLEIEDT 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R             +          D +    + S    V   +S G
Sbjct: 528 PCWVLLSSTGLLARTSDET--------EPVRDDHRHAHDVLASGVLASVRAEVGALTSAG 579

Query: 597 FVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            V +  V  LP   P       + G  +  + +L  GER+ T++   ED        +  
Sbjct: 580 RVVRLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAEDA-----PTLAL 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G V+R    D    NR     + L   D ++     T +++++  +     + FP 
Sbjct: 635 GTAAGVVKRVAQGDV--PNRDSWEVVALKPGDAVVGAVPVTDDDELVFVSSEASLLHFPA 692

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +A+R   GR + G+ GI LA   +V+    V                             
Sbjct: 693 TAVRP-QGRTAGGMAGIKLAGDQRVVFFGAVRAGQ------------------------- 726

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                          SEE            L  ++ G  K T+   +    R+  G+RA 
Sbjct: 727 ---------------SEECAVVTVAGASDALPGTQTGSVKTTAFAAYPGKGRATGGVRAH 771

Query: 831 DVSKINEI 838
              K  + 
Sbjct: 772 RFLKGEDT 779



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 695 DILLTTKLGQCVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +L +  G   R    +       R++  V    LA G  V++             R+ 
Sbjct: 529 CWVLLSSTGLLARTSDETEPVRDDHRHAHDV----LASG--VLASVRAEVGALTSAGRVV 582

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER---CQELKLKEQFILTVSEKGFGK 810
            +  +       +     ++     + V      ER      L      +   +  G  K
Sbjct: 583 RLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAEDAPTLALGTAAGVVK 642

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R +  D    NR    + A          A+V   PV D+D+++ VS + +L+  P   +
Sbjct: 643 RVAQGDVP--NRDSWEVVALK-----PGDAVVGAVPVTDDDELVFVSSEASLLHFPATAV 695

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           R   R   G+     A D+RVV    +R  +  + A  T
Sbjct: 696 RPQGRTAGGMAGIKLAGDQRVVFFGAVRAGQSEECAVVT 734



 Score = 44.1 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 88/277 (31%), Gaps = 34/277 (12%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R    +   +    + A      D + S    +   ++   T
Sbjct: 523 EIEDTPCWVLLSSTGLLARTS-DETEPVRDDHRHA-----HDVLASGVLASVRAEVGALT 576

Query: 701 KLGQCVRFPISAIRVFAGRN-----SVGVRGIS---LAKGDQVISM-AIVLHADADYDER 751
             G+ VR  +  +            S GV       L  G++++++ ++   A       
Sbjct: 577 SAGRVVRLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAEDAPTLALGT 636

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +    AQ  + + D+ E+ +LK   +V G +           +  ++ VS +     
Sbjct: 637 AAGVVKRVAQGDVPNRDSWEVVALKPGDAVVGAVP-------VTDDDELVFVSSEASLLH 689

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS-----------DKG 860
             +   R   R+  G+    ++  ++            +++  +V+             G
Sbjct: 690 FPATAVRPQGRTAGGMAGIKLA-GDQRVVFFGAVRAGQSEECAVVTVAGASDALPGTQTG 748

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++            RAT GV      K E  + +  +
Sbjct: 749 SVKTTAFAAYPGKGRATGGVRAHRFLKGEDTLLLAWV 785


>gi|71910525|ref|YP_282075.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
 gi|161485747|ref|NP_664429.2| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS315]
 gi|73921619|sp|Q8K7U6|PARC_STRP3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|71853307|gb|AAZ51330.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|94994200|ref|YP_602298.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
 gi|94547708|gb|ABF37754.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
          Length = 821

 Score =  551 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 573 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 628

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 629 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 687 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 735

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 736 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 768

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|125624338|ref|YP_001032821.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493146|emb|CAL98110.1| topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071122|gb|ADJ60522.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 824

 Score =  551 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 272/890 (30%), Positives = 461/890 (51%), Gaps = 79/890 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P +D+D +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKVDVDKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+++R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIIKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHLVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +   ++E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFARPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +      G+     RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASSALEEIGK-----RDDDELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQ 667
           +  G+ L   L + +  E++  +        ++    +V  T++G ++   R   S +  
Sbjct: 571 KDIGEHLSQSLSNFSSDEKVIYVQIV----DAFAGENLVVVTRNGQIKQIERESFSPWRT 626

Query: 668 INRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                    KL    DE++ +      + ++L ++ G  +RF +  + V   R + GV+ 
Sbjct: 627 YRSKSTPYAKLKGNDDEVVLISPVQFTD-LMLISENGYALRFNLDDVPVLGAR-AAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D++ +   V         +  ++K               + +    ++   N  
Sbjct: 685 MNLKNDDKIKAAFFVNSNSWYLLTQRAFIKR--------------VKTEDIPATSRANRG 730

Query: 787 EERCQELKLKEQFILTVS-EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +  + LK     +            ++  +                 +++      A  
Sbjct: 731 LQVLRTLKTNNHKVFAAGLINSTADLSALTE-----------------ELDLFSQAKAPA 773

Query: 846 PVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 774 TKETDEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 12/275 (4%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
              +     E       VV  T+ G ++R           S    +     DE+L     
Sbjct: 486 VQTIEIEASELIVAEDTVVSVTRSGYIKRTS---PRSFASSALEEIGKRDDDELLYYANA 542

Query: 691 TQENDILLTTKLGQCVRFPI---SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                +L+ T LG  +  PI   S IR       +     + +  ++VI + IV     +
Sbjct: 543 KTTQHLLIFTNLGNVIYRPIHELSDIRWKDIGEHLSQSLSNFSSDEKVIYVQIVDAFAGE 602

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
               +     +    R          S     +      +E      ++   ++ +SE G
Sbjct: 603 NLVVVTRNGQIKQIERESFSPWRTYRSKSTPYAKLKGNDDEVVLISPVQFTDLMLISENG 662

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +  R +  D  +      G++A ++   ++   + A F VN N    L++ +  + RV  
Sbjct: 663 YALRFNLDDVPVLGARAAGVKAMNLKNDDK---IKAAFFVNSNSW-YLLTQRAFIKRVKT 718

Query: 868 NEIRIASRATKGVVIFSTAK--DERVVSVERIRES 900
            +I   SRA +G+ +  T K  + +V +   I  +
Sbjct: 719 EDIPATSRANRGLQVLRTLKTNNHKVFAAGLINST 753


>gi|94988399|ref|YP_596500.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992281|ref|YP_600380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
 gi|94541907|gb|ABF31956.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545789|gb|ABF35836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
          Length = 821

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 573 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 628

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 629 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 687 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 735

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 736 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 768

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|94990280|ref|YP_598380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
 gi|94543788|gb|ABF33836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
          Length = 824

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 7   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 67  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 127 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 187 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 247 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 307 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 367 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 411 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 461 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 521 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 575

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 576 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 631

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 632 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 690 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 739 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 771

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 772 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 822


>gi|146318418|ref|YP_001198130.1| DNA topoisomerase IV subunit A [Streptococcus suis 05ZYH33]
 gi|145689224|gb|ABP89730.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 05ZYH33]
          Length = 817

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 291/885 (32%), Positives = 451/885 (50%), Gaps = 82/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 408 ------------SYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   +++ +  E I     F E   ++        TK+G ++R +  +F     
Sbjct: 571 KDIGEHLSQTLMNFDTNEEII----FAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D+ D +++V     ++ I+L T+ G  +RF I  + +   + +   + 
Sbjct: 627 YKSKSTKYAKLTDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGAKAAG-AKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D V++ A + +  + Y                  G  + + + +   +      
Sbjct: 685 VNLKDED-VVAAAFISNTSSVYLLTQ-------------RGSLKRMATEEIPVTSRAKRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +           T   DF +             S  NE      +  
Sbjct: 731 LQVLRELKAKPHRVFAAG----PVLTDQGDFDL------------FSTANEDDTTSQILH 774

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V         S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 775 VQ--------SKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 21/219 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E   +  TK G   R            N+  +  +     DQ+I +    
Sbjct: 490 EIDTASLIVEEETFVSVTKAGYIKRTS------PRSFNASTLEEMGKRDDDQLIFLQNAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ + +   +  +      E  +E  
Sbjct: 544 TTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFAELVENFEE-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   V++ G  KR    +F          ++T  +K+ +   +V        D I+
Sbjct: 602 ---GTYFAVTKYGQIKRVERKEFTPWR--TYKSKSTKYAKLTDAEDVVITVSPVVLDDIM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+++KG  +R  + E+ I      G    +   ++ V +
Sbjct: 657 LMTEKGYALRFNIEEVPIIGAKAAGAKAVNLKDEDVVAA 695


>gi|222153160|ref|YP_002562337.1| DNA topoisomerase IV subunit A [Streptococcus uberis 0140J]
 gi|222113973|emb|CAR42255.1| topoisomerase IV subunit A [Streptococcus uberis 0140J]
          Length = 819

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/892 (31%), Positives = 445/892 (49%), Gaps = 86/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + FLL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGFLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPNAKLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A  + +LN L +YT LQ  ++ NMVA++ + P +  +  IL +++A R+ +++ R+
Sbjct: 302 LKKDADTETVLNYLLKYTDLQVNYNFNMVAIDHFTPHQVGIQKILSSYIAHRKSIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E + L   IK    I+  
Sbjct: 406 ----------KVSYAFTEEQAEAIVTLQLYRLTNTDILTLQKEEDELNDLIKTLTAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +    RR+ + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELRDVKKKFGNERRSELQKEAQTIEIDTASLIVEEETFVSVTKSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+  G V    +  L     
Sbjct: 516 SPRSFNASSLEEIGK-----RDDDHLIFVENAKTTQHLLLFTDQGNVIYRPIHELQDIKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I       E    +        T+ G ++R    D      
Sbjct: 571 KEIGEHLSQHITNFATDELILH----AEIVDYFEKGSYFSVTQLGQIKRFDRKDLTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   + +D I+SV     E+ ILL +  G  +RF    +    G  S GV+ 
Sbjct: 627 YRTKSTKYAKLKNEQDRIVSVAPIFFED-ILLISHQGYALRFSAEEV-PVQGLKSAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L  GD  I+ A +   D+        +    + +R+ + D  + +       V     
Sbjct: 685 MNLKAGDH-IAAAFLASTDS-----FFVLTQRGSLKRVATSDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +                              D+             P
Sbjct: 734 ---LRELKNKPHRVFFAGAV---------------HGDAPSSTIDLFND----------P 765

Query: 847 VNDN---DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           V ++    +++++S  G    + +    +A R + G  I  T  ++ V++  
Sbjct: 766 VEESNQAQELLVISKTGQEYVIDLRSYSLAERTSNGSFISDTISEQEVLTAT 817


>gi|71903357|ref|YP_280160.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
 gi|71802452|gb|AAX71805.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
          Length = 821

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 286/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKTDAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 573 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 628

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 629 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 687 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 735

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 736 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 768

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|28896140|ref|NP_802490.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes SSI-1]
 gi|28811390|dbj|BAC64323.1| putative DNA topoisomerase IV, subunit C [Streptococcus pyogenes
           SSI-1]
          Length = 821

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 450/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 573 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 628

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 629 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 687 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 735

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 736 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 768

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|295836110|ref|ZP_06823043.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197695204|gb|EDY42137.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 822

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/748 (37%), Positives = 408/748 (54%), Gaps = 51/748 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + + + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+ 
Sbjct: 16  ADEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLR 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D PP
Sbjct: 76  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPP 135

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  + D + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVG
Sbjct: 136 AAMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I  P+ DLDALM+ + GPD PTG  I+G  GI++AYA GR
Sbjct: 196 MATNMAPHNLGEVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLGGIRDAYANGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 256 GSFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 306 QG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           +   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDH 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++     
Sbjct: 376 RFSVVRRRSEFRRTKRLNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEH---- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 432 ----------------------FSLSETQTQYILDTPLRRLTKFDRLELESERDRLNAEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTV 542
           +E   IL S + L  ++  EL +V  +  TPRRT ++E            +  +   V +
Sbjct: 470 EELTAILESDAELRKLVSSELAAVAKKHGTPRRTVLLESADSPVAAIPLQVADDPCRVLL 529

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R P +    +    + +        D +      +    V   +S G + +  
Sbjct: 530 SSTGVIARTPGTEPLQEGSAKRAK-------HDVIRSAVPATARGEVGAVTSAGRLLRLT 582

Query: 603 VWRLPI-----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V  LP      G     G  +   L L   E +  +    E     ++  +   T  G V
Sbjct: 583 VVDLPQLAEGAGPALVGGAPVAEFLRLEGDETLVCLCTLDE-----SSPGLALGTAQGVV 637

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R         NR     + L   D I+   E  T E D++  T   Q +RFP SA+R  
Sbjct: 638 KRVVPD--YPANREELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFPASAVRA- 694

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHA 744
            GR + GV G+ L +G +V+S  +V  A
Sbjct: 695 QGRPAGGVAGVKLTEGAKVLSFDVVDPA 722



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 96/306 (31%), Gaps = 40/306 (13%)

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G     +L L   +     +P        ++   V  +  G + R   ++ +Q   
Sbjct: 494 AKKHGTPRRTVL-LESADSPVAAIPL----QVADDPCRVLLSSTGVIARTPGTEPLQEGS 548

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---- 726
           +     K    D I S    T   ++   T  G+ +R  +  +   A      + G    
Sbjct: 549 A-----KRAKHDVIRSAVPATARGEVGAVTSAGRLLRLTVVDLPQLAEGAGPALVGGAPV 603

Query: 727 ---ISLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
              + L   + ++ +  +  +            +K +         + E IT  + D  V
Sbjct: 604 AEFLRLEGDETLVCLCTLDESSPGLALGTAQGVVKRVVPDYPANREELEVITLREGDRIV 663

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                     EL+  E+ ++ +++     R  +   R   R   G+    +++  +   +
Sbjct: 664 -------GAAELRTGEEDLVFITDDAQLLRFPASAVRAQGRPAGGVAGVKLTEGAK---V 713

Query: 842 VAVFPVNDNDQIILVSDKG-----------TLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           ++   V+      + +  G           T    P ++     RAT GV      K E 
Sbjct: 714 LSFDVVDPAVDAAVFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLKGED 773

Query: 891 VVSVER 896
            +S   
Sbjct: 774 CLSFAW 779


>gi|327474465|gb|EGF19871.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK408]
          Length = 816

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 293/888 (32%), Positives = 467/888 (52%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDTVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ D+ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTDLILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIVGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETCVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L T+ G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTRNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F     +G                      
Sbjct: 731 LQVLRELKAKPHRVFAAG-PVFGEAVDFDLFTTEAEAG---------------------- 767

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 768 ---EEQILQVISNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|312277995|gb|ADQ62652.1| DNA topoisomerase IV (Subunit C) [Streptococcus thermophilus ND03]
          Length = 818

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/883 (31%), Positives = 446/883 (50%), Gaps = 82/883 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE  +L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  +K +    RR+ +       +++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTLFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A +    G+     RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASKIEEVGK-----RDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + ++ E +       + E+       +  TK G ++R +  +F     
Sbjct: 571 KDLGEHLSQTITNFSKDEEVLYAEILDDFETG----TYLATTKLGQIKRFERKEFTPWRT 626

Query: 670 --RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL    +++   T  Q +DI++ T+ G  +RF    + V     +VGV+ I
Sbjct: 627 YKSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGA-KAVGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+V ++ +          +   +K               + +     +       
Sbjct: 686 NLKDDDKVQAVFVANTQSFYLLTQRASLKR--------------VATSDIPRAKRAGRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   + T                              ++       +   PV
Sbjct: 732 QVLRELKTKPHRVFTAG-------------------------PVFTENAGAEIDLLATPV 766

Query: 848 NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +  QI+ +++  G    V ++ + ++ R + G  I   A  E
Sbjct: 767 EETPQILFVIATTGETAEVDLSLLNLSERTSNGSFIEGLADKE 809



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 33/282 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG------NVRRNKLSDFIQI----NRSGKIAMKLDS 680
           T I+    +E++        A   G      NV + +L D  +      RS   A     
Sbjct: 430 TDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGNDRRSELQAETKTI 489

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---- 736
             EI +     +E   +  T+ G   R            N+  +  +     D +I    
Sbjct: 490 --EIDTASLIVEEETYVSITRGGYVKRTS------PRSFNASKIEEVGKRDDDDLILVQQ 541

Query: 737 ----SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  ++    A+   R  +       + L    ++ IT+   D  V      +  + 
Sbjct: 542 AKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAEILDDFET 601

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   L  ++ G  KR    +F    R+ K          +E   +V V P+  +D 
Sbjct: 602 -----GTYLATTKLGQIKRFERKEFTPW-RTYKSKSVKYGKLKDESDVIVTVTPIQLDD- 654

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I++++ KG  +R   +E+ +      GV   +   D++V +V
Sbjct: 655 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAV 696


>gi|146320614|ref|YP_001200325.1| DNA topoisomerase IV subunit A [Streptococcus suis 98HAH33]
 gi|253751560|ref|YP_003024701.1| topoisomerase IV subunit A [Streptococcus suis SC84]
 gi|145691420|gb|ABP91925.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 98HAH33]
 gi|251815849|emb|CAZ51459.1| topoisomerase IV subunit A [Streptococcus suis SC84]
          Length = 817

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 291/885 (32%), Positives = 451/885 (50%), Gaps = 82/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 408 ------------SYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNASTLEEMGK-----RDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   +++ +  E I     F E   ++        TK+G ++R +  +F     
Sbjct: 571 KDIGEHLSQTLMNFDTNEEII----FAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D+ D +++V     ++ I+L T+ G  +RF I  + +   + +   + 
Sbjct: 627 YKSKSTKYAKLKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGAKAAG-AKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D V++ A + +  + Y                  G  + + + +   +      
Sbjct: 685 VNLKDED-VVAAAFISNTSSVYLLTQ-------------RGSLKRMATEEIPVTSRAKRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +           T   DF +             S  NE      +  
Sbjct: 731 LQVLRELKAKPHRVFAAG----PVLTDQGDFDL------------FSTANEDDTTSQILH 774

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V         S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 775 VQ--------SKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 21/219 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E   +  TK G   R            N+  +  +     DQ+I +    
Sbjct: 490 EIDTASLIVEEETFVSVTKAGYIKRTS------PRSFNASTLEEMGKRDDDQLIFLQNAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ + +   +  +      E  +E  
Sbjct: 544 TTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLMNFDTNEEIIFAELVENFEE-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                   V++ G  KR    +F          ++T  +K+ +   +V        D I+
Sbjct: 602 ---GTYFAVTKYGQIKRVERKEFTPWR--TYKSKSTKYAKLKDAEDVVITVSPVVLDDIM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L+++KG  +R  + E+ I      G    +   ++ V +
Sbjct: 657 LMTEKGYALRFNIEEVPIIGAKAAGAKAVNLKDEDVVAA 695


>gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
          Length = 815

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/749 (37%), Positives = 406/749 (54%), Gaps = 52/749 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +MG+
Sbjct: 8   TPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RRDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + ++TVDF PNYDG  QEPV L A +PN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEVV     +I +P  DL+ LM  + GPD PTG  I+G  G+++AYATG
Sbjct: 188 GMATNMPPHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIVGLGGVRDAYATG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLTD 307

Query: 305 RQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 REHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  VV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   AR  LM+R   
Sbjct: 368 HRFTVVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS++QT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSDIQTQYILDTPLRRLTRFDRIELESERDRLTAE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTV 542
           I+E   IL S + L  ++  EL +V  +  T RRT ++E           V +    V +
Sbjct: 462 IEELSRILDSDAELRKLVSSELAAVSKKYGTDRRTVLLESSGAAAAVPLQVEDTPCRVLL 521

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R   +   A                D +      +    V   +S G + + +
Sbjct: 522 SSTGLLARTADATPLA--------EAPKRVKHDLIVSAVAATARGEVGAVTSAGRLLRLQ 573

Query: 603 VWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP             G  +   L+L   ER+  +    E     ++  +   T  G 
Sbjct: 574 VIDLPQLPGTDTAPSLSGGAPVAEFLTLEADERLVCLTTLDE-----SSPGLALGTAQGV 628

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R         ++     + L   D I+   E  T E D++  T     +RFP S +R 
Sbjct: 629 VKRVVPD--YPAHKEELEVISLRDGDRIVGATELRTGEEDLVFITDEAHLLRFPASVVRP 686

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             GR + G+ G+ L +G +V+S   V  A
Sbjct: 687 -QGRPAGGMAGVKLGEGARVVSFTAVDPA 714



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 29/235 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV----GVRGI----SLAKGD 733
           D I+S    T   ++   T  G+ +R  +  +    G ++     G   +    +L   +
Sbjct: 546 DLIVSAVAATARGEVGAVTSAGRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEFLTLEADE 605

Query: 734 QVISMAIVLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +++ +  +  +           +            +  E+ SL++   + G        E
Sbjct: 606 RLVCLTTLDESSPGLALGTAQGVVKRVVPDYPAHKEELEVISLRDGDRIVG------ATE 659

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L+  E+ ++ ++++    R  +   R   R   G+    + +      +V+   V+    
Sbjct: 660 LRTGEEDLVFITDEAHLLRFPASVVRPQGRPAGGMAGVKLGEGAR---VVSFTAVDPAVD 716

Query: 853 IILVSDKG-----------TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            ++ +  G           T    P ++     RAT GV      K E  +S   
Sbjct: 717 AVVFTVAGSRGTLDDSVQTTAKVTPFDQYPRKGRATGGVRCQRFLKGEDCLSFAW 771



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 56/177 (31%), Gaps = 18/177 (10%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V    IV    A     +  +       RL   D  ++       S+ G         L
Sbjct: 542 RVKHDLIVSAVAATARGEVGAVTSAGRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEFLTL 601

Query: 794 KLKEQFILTVS------------EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  E+ +   +             +G  KR    D+       + +    +   + I   
Sbjct: 602 EADERLVCLTTLDESSPGLALGTAQGVVKRV-VPDYPAHK---EELEVISLRDGDRIVGA 657

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +      + ++ ++D+  L+R P + +R   R   G+      +  RVVS   + 
Sbjct: 658 TELRT--GEEDLVFITDEAHLLRFPASVVRPQGRPAGGMAGVKLGEGARVVSFTAVD 712


>gi|119717173|ref|YP_924138.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
 gi|119537834|gb|ABL82451.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
          Length = 826

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/842 (32%), Positives = 412/842 (48%), Gaps = 96/842 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            ++ E+ I    I  EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  +
Sbjct: 11  PDDFEEHILDTDIKQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMNDMGLRPD 70

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-GDPPAA 127
           + +VKCARI GEVMG+ HPHG++AIYDAL R+AQ W++RL +++G GNFGS    DPPAA
Sbjct: 71  RGHVKCARIVGEVMGRLHPHGDSAIYDALVRVAQPWAMRLPMVDGHGNFGSPGGDDPPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  +   + +DTVDF+PNYD    EP VL A  P+++VNG  GIAVGMA
Sbjct: 131 MRYTEARMAPPAVAMTASIDEDTVDFKPNYDSRELEPSVLPAAIPSLVVNGTTGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN   HNL EVV     +I +P   ++ LM  + GPD PTG  I+G  G+++AY TGRG+
Sbjct: 191 TNCAPHNLVEVVQALRHLITHPSATVEDLMRFVPGPDLPTGGKIVGLEGVRDAYETGRGT 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R  + +E  +  R+ IVVTE+PY V    ++E+I  LV+ K++  I+D++D +DR+ 
Sbjct: 251 FRMRATARVESITNRRKGIVVTELPYGVGTEKVVERIKTLVQGKKLQGISDIKDLTDREN 310

Query: 308 -YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             R+VIE+K G   + +L QLY++T ++  F +N VAL   +P   +L  +L+ F+  R 
Sbjct: 311 GLRLVIEVKNGFVPEALLEQLYKHTPMEDTFGINAVALVDGQPRTLSLKELLQVFLDHRF 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR+ +   KA DR H++ GL IA+ ++DEV+++IR S N   A+  L+        
Sbjct: 371 DVVRRRSVFRRGKAADRLHLVEGLLIAILDIDEVIQLIRSSDNAAAAKERLIS------- 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL++ L RLT   R ++  E + L   I+E
Sbjct: 424 -------------------VFDLSEVQADYILDMPLRRLTKFSRIELEKEQDDLRRTIEE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE----DMVVTV 542
              I++       ++  EL  +      PRRT ++E          +  E       V +
Sbjct: 465 LDAIINDDKLRWKVVSDELGEIAKTYGNPRRTVLLESAGTAVTAAAVPLEVADDPCYVYL 524

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R   +  +  R GG+          D V      +    V   +S G + K  
Sbjct: 525 SSTGLLART-ANADQPGRGGGRAS-------HDVVVSAVPATARGEVGGLTSAGRLVKIG 576

Query: 603 VWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP     A       G  +  IL+L+ GER+  +     D        +   T+ G 
Sbjct: 577 VLELPQLPDTANDPHLAGGLPVSEILALDPGERLLALCTLTTD-----GPGLALGTRLGT 631

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R        + +     ++L   DE++  VE  T    +   T   Q + F   A+R 
Sbjct: 632 VKRVNPE---VLGKDDWEVIRLADGDEVVGAVELRTGHETLCFITTDAQLLHFGAEAVRP 688

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+  G+ GI +  G++V                        A    I  DT E + +
Sbjct: 689 -QGRSGGGIAGIRVTTGERV------------------------AWFGAIDPDTPEGSVV 723

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              S     +                  +E G  K T   ++    R+  G+R     K 
Sbjct: 724 VTASGSATALPG----------------TEPGAVKATPFSEYPAKGRATGGVRCHRFLKG 767

Query: 836 NE 837
            +
Sbjct: 768 ED 769



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 89/264 (33%), Gaps = 30/264 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V+ +  G + R   +D  Q  R G  A      D ++S    T   ++   T  G
Sbjct: 517 DDPCYVYLSSTGLLARTANAD--QPGRGGGRASH----DVVVSAVPATARGEVGGLTSAG 570

Query: 704 QCVRFPISAIRVFAGRN-----SVGVR---GISLAKGDQVISMAIVLHADADYDERICYM 755
           + V+  +  +            + G+     ++L  G++++++  +              
Sbjct: 571 RLVKIGVLELPQLPDTANDPHLAGGLPVSEILALDPGERLLALCTLTTDGPGLALGTRLG 630

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                   ++  D  E+  L +   V G +      EL+   + +  ++         + 
Sbjct: 631 TVKRVNPEVLGKDDWEVIRLADGDEVVGAV------ELRTGHETLCFITTDAQLLHFGAE 684

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV----------SDKGTLIRV 865
             R   RSG GI    V+    +    A+ P      +++           ++ G +   
Sbjct: 685 AVRPQGRSGGGIAGIRVTTGERVAWFGAIDPDTPEGSVVVTASGSATALPGTEPGAVKAT 744

Query: 866 PVNEIRIASRATKGVVIFSTAKDE 889
           P +E     RAT GV      K E
Sbjct: 745 PFSEYPAKGRATGGVRCHRFLKGE 768


>gi|15674931|ref|NP_269105.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes M1 GAS]
 gi|20139229|sp|Q9L7Q4|PARC_STRP1 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|7532889|gb|AAF63267.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|13622074|gb|AAK33826.1| putative DNA topoisomerase IV (subunit C) [Streptococcus pyogenes
           M1 GAS]
          Length = 819

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/892 (32%), Positives = 451/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKTKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERISNGSFISDTISDQEVL-VAR 817


>gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 822

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 277/748 (37%), Positives = 407/748 (54%), Gaps = 51/748 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + + + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+ 
Sbjct: 16  ADEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLR 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D PP
Sbjct: 76  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPP 135

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  + + + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVG
Sbjct: 136 AAMRYTESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I +P+ DLD LM+ + GPD PTG  I+G  GI++AYA GR
Sbjct: 196 MATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIVGLAGIRDAYANGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 256 GSFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 306 QG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           +   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDH 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++     
Sbjct: 376 RFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEH---- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 432 ----------------------FSLSETQTQYILDTPLRRLTRFDRIELESERDRLNAEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTV 542
           +E   IL S + L  ++  EL +V  +  TPRRT ++E            +  +   V +
Sbjct: 470 EELTAILESDTELRKLVSGELAAVAKKYGTPRRTVLLESADTPVAAIPLQVADDPCRVLL 529

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R P +    +    + +        D +      +    V   +S G + +  
Sbjct: 530 SSTGVIARTPGTEPLQEGSAKRAK-------HDVIRSAVPATARGEVGAVTSAGRLLRIT 582

Query: 603 VWRLPI-----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V  LP      G     G  +   + L   E +  +    E     ++  +   T  G V
Sbjct: 583 VVDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTLDE-----SSPGLAIGTAQGVV 637

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R         NR     + L   D I+   E  T E D++  T   Q +RF  SA+R  
Sbjct: 638 KRVVPD--YPANREELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRP- 694

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHA 744
            GR + GV G+ LA G +V+S  +V  A
Sbjct: 695 QGRPAGGVAGVKLADGAKVLSFDVVDPA 722



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 40/302 (13%)

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G     +L L   +     +P        ++   V  +  G + R   ++ +Q   +   
Sbjct: 498 GTPRRTVL-LESADTPVAAIPL----QVADDPCRVLLSSTGVIARTPGTEPLQEGSA--- 549

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG-------I 727
             K    D I S    T   ++   T  G+ +R  +  +   A      + G       +
Sbjct: 550 --KRAKHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFV 607

Query: 728 SLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            L   + ++ +  +  +            +K +         + E IT  + D  V    
Sbjct: 608 RLEGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPANREELEVITLREGDRIV---- 663

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 EL+  E+ ++ +++     R  +   R   R   G+    ++   +   +++  
Sbjct: 664 ---GAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAK---VLSFD 717

Query: 846 PVNDNDQIILVSDKG-----------TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+      + +  G           T    P ++     RAT GV      K E  +S 
Sbjct: 718 VVDPAVDAAVFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLKGEDCLSF 777

Query: 895 ER 896
             
Sbjct: 778 AW 779


>gi|225870669|ref|YP_002746616.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
 gi|225700073|emb|CAW94138.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
          Length = 822

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 283/891 (31%), Positives = 451/891 (50%), Gaps = 80/891 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+  +V+R  
Sbjct: 185 NLSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKSRVVVRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTE+PY+VNKA +++KI ++    ++ DIA++RDESDR G R+ IE
Sbjct: 245 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDRTGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 365 QFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++ E + L   I     I+  
Sbjct: 409 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      +E +     + E+  V+V+  GY+KR 
Sbjct: 459 EATMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    V+ L     
Sbjct: 519 SPRSFHASSLEEIGK-----RDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRW 573

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E +     + E   S+     +  T+HG ++R +  +      
Sbjct: 574 KDIGEHLSQAIANFAADELVI----YAELIQSFEEGLYISVTQHGLIKRFERKELTPWRT 629

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   D  D I+++     E+ +LL T+ G  +RF    I    G  + GV+G
Sbjct: 630 YKSKSIKYAKLKDIDDRIVAIAPIIMED-LLLVTQQGYALRFSSQEI-PIQGLKAAGVKG 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D ++S   V        +    +    A +R+   D  + +       V     
Sbjct: 688 INLKAQDYLVSACPV------NADSFFVLTQRGALKRVAIADIPQTSRANRGLPV----- 736

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G  K                    D+   +          
Sbjct: 737 ---LRELKTKPHRVFLA---GMVK------------GDTTTGTIDLFTHDSEDTA----- 773

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + Q+ ++S  G   ++ +N + ++ R + G  I  +  D+ V +   I
Sbjct: 774 --SDQQLEVISKTGQQYQLALNSLSLSDRTSNGSFISESISDQEVAAARLI 822



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 73/544 (13%), Positives = 162/544 (29%), Gaps = 100/544 (18%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++++V    Y +NKA     +          + ++  +   S          +++  ++
Sbjct: 254 KQQIIVTELPYEVNKAVLVKKIDD--VRVNNKVPDIAEVRDESDRTGLRIAIELKKDADS 311

Query: 425 SDIKDLIDLIDDSS--YTIGSDGTMYLSEVQ--TRAILELRL--ARLTGLGRDDIRNELN 478
             I + +    +    Y        + +  Q   + IL   +   +   + R     E  
Sbjct: 312 QTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRSQFDKEKA 371

Query: 479 SLGIEIKE-CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
              + I E  + +LS    ++ +I+                   +   +++       E 
Sbjct: 372 EKRLHIVEGLIRVLSILDEIIALIRASDNK-------------ADAKENLKVSYDFSEEQ 418

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V+         L +YR           +   + D    +  +S             
Sbjct: 419 AEAIVT---------LQLYRLTN---TDIVTLQQEEHDLRELITTLS-----AIIGDEAT 461

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +  G  L  + + +Q   I +     E+E+       V  T+ G +
Sbjct: 462 MYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEET------FVSVTQGGYI 515

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R         + S    +     D ++ V+     + +LL T LG  +           
Sbjct: 516 KRTS---PRSFHASSLEEIGKRDDDHLIFVKQAKTTDHLLLFTNLGNVI----------- 561

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                                            R  Y       + +    ++ I +   
Sbjct: 562 --------------------------------YRPVYELTDLRWKDIGEHLSQAIANFAA 589

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKIN 836
           D  V      +  +E        ++V++ G  KR    +         K I+   +  I+
Sbjct: 590 DELVIYAELIQSFEE-----GLYISVTQHGLIKRFERKELTPWRTYKSKSIKYAKLKDID 644

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +   +VA+ P+   D ++LV+ +G  +R    EI I      GV   +    + +VS   
Sbjct: 645 DR--IVAIAPIIMED-LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACP 701

Query: 897 IRES 900
           +   
Sbjct: 702 VNAD 705


>gi|49486198|ref|YP_043419.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81649352|sp|Q6G9K4|PARC_STAAS RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49244641|emb|CAG43072.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 800

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVVTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVVTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVVTEGVSENDTI 704


>gi|290580371|ref|YP_003484763.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
 gi|254997270|dbj|BAH87871.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
          Length = 812

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 273/810 (33%), Positives = 420/810 (51%), Gaps = 44/810 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 ADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + IE 
Sbjct: 181 IDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTEIEN 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV TEIPY+VNKAA+++KI ++    ++  IA++RDESDR+G R+ IELK+ A
Sbjct: 241 LKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               ILN L++YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+K+   
Sbjct: 301 DEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARSKFDKE 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                     
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------------- 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   SE Q  AI+ L+L RLT      + NE   L   I     I+     + 
Sbjct: 400 -----KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +   PR + +       +++    IV E+  V+V+  GY+KR     +
Sbjct: 455 NVMKRELREVKKKFGNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G+     RD+D V  +    T   +L F++LG V    +  L     +  G+
Sbjct: 515 NASTVEELGK-----RDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIGE 569

Query: 617 ALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RS 671
            L  NI +    E I  +      E          AT  G ++R +  D         ++
Sbjct: 570 HLSQNITNFATDEEILYVDLVDHFEEG----TYYAATSLGQIKRFERRDLTPWRSYKSKA 625

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            K A      D+++ +     ++ ++L T  G  +RF I  +    G  + GV+ I+L +
Sbjct: 626 VKYAKLKGDDDQVIRISPIKLDD-VMLITARGYALRFNIEEV-PIVGPKAAGVKAINLKE 683

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD + +  I          +   +K MS     ++   +    +  D   + +       
Sbjct: 684 GDSLAAAFIANTDSIYILTQRGSLKRMSTNLIPVTSRAKRGLQVLRDLKSKPHRVFAAGP 743

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                   I   +  G   +    + +  +
Sbjct: 744 VFSEAAGEIDLFTTVGEQGQEEILEIQSQS 773



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 77/528 (14%), Positives = 183/528 (34%), Gaps = 36/528 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  V   +   V     V +I     N +      ++   +  
Sbjct: 229 RVVVRSRTEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDRE 288

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D+      +     +++Q      +         +  I      L   I 
Sbjct: 289 GLRIAIELKKDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIP---MLTSYIA 345

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+ +RS+      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 346 HRKDIIVARSKFDKEKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 403

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR         + +V  + +       ++T  ++        +Y 
Sbjct: 404 DFSEEQAEAIVTLQLYRLTN------TDIVTLENEEAELRERITTLNAI--IGDERTMYN 455

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +  G   ++ L        T  +              V  T+ G ++R 
Sbjct: 456 VMKRELREVKKK-FGNPRLSELQAE-----TQTIEIDTASLIVEEETYVSVTRGGYIKRT 509

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   N S    +     D+++ ++      ++L+ T LG  +  PI  +       
Sbjct: 510 S---PRSFNASTVEELGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADI-RWK 565

Query: 721 SVG---VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +G    + I + A  ++++ + +V H +         +  +    R          S  
Sbjct: 566 EIGEHLSQNITNFATDEEILYVDLVDHFEEGTYYAATSLGQIKRFERRDLTPWRSYKSKA 625

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              +      ++  +   +K   ++ ++ +G+  R +  +  I      G++A ++ +  
Sbjct: 626 VKYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEVPIVGPKAAGVKAINLKE-- 683

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             G  +A   + + D I +++ +G+L R+  N I + SRA +G+ +  
Sbjct: 684 --GDSLAAAFIANTDSIYILTQRGSLKRMSTNLIPVTSRAKRGLQVLR 729



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E   +  T+ G   R            N+  V  +     D VI +    
Sbjct: 484 EIDTASLIVEEETYVSVTRGGYIKRTS------PRSFNASTVEELGKRDDDDVIFIQNAK 537

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+   D  +      +  +E  
Sbjct: 538 TTQELLIFTNLGNVIYRPIHELADIRWKEIGEHLSQNITNFATDEEILYVDLVDHFEE-- 595

Query: 795 LKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                    +  G  KR    D     +   K ++   +   ++    ++   +   D +
Sbjct: 596 ---GTYYAATSLGQIKRFERRDLTPWRSYKSKAVKYAKLKGDDDQVIRISPIKL---DDV 649

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +L++ +G  +R  + E+ I      GV   +  + + + +
Sbjct: 650 MLITARGYALRFNIEEVPIVGPKAAGVKAINLKEGDSLAA 689


>gi|27262294|gb|AAN87428.1| DNA gyrase subunit A [Heliobacillus mobilis]
          Length = 639

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/722 (36%), Positives = 406/722 (56%), Gaps = 85/722 (11%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M  NIP HNL EVVD    +IDNP++  + LM+ I+GPDFPTG +I+GR GI+ AY TGR
Sbjct: 1   MGXNIPPHNLSEVVDAVFMMIDNPNVTTEDLMKSIKGPDFPTGGLIMGREGIRQAYLTGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+++R  + IEK +G + +I+V EIPYQVNKA +LE+IAELVR+KR+  I DLRDESDR
Sbjct: 61  GSVIMRAKARIEKMNGGKMRILVHEIPYQVNKAKLLERIAELVRDKRVDGITDLRDESDR 120

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G ++VIEL+R  +  V+LNQLY++T +Q  F VNM+AL    P+   L  I+  ++  +
Sbjct: 121 KGMQIVIELRRDVNPQVVLNQLYKHTQMQDTFGVNMLALVDNVPKVLNLRDIIYYYLEHQ 180

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++V+VRRT+Y L KA  RAH+L GL IA+ N+D ++ IIR S   + AR ++M       
Sbjct: 181 KDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSETEDVARSQMM------- 233

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD-IRNELNSLGIEI 484
                              G    SE Q +AIL++RL RL        ++  + SL    
Sbjct: 234 -------------------GEFGFSEKQAQAILDMRLKRLVRNWTGKRLKKSIQSLLNSF 274

Query: 485 KECLD-ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                   +S   +L IIK+E+  +K +    RRT I  G  D + ED I  ED VVT++
Sbjct: 275 AYFRARNWNSEKLVLDIIKKEIGEIKAKFADARRTEITAGAGDFDIEDLIAEEDAVVTIT 334

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+ ++ Y+AQRRGGKG + +  +++DFV  LFI +TH  +LFF+  G VY+ K 
Sbjct: 335 HNGYIKRLHVNTYKAQRRGGKGVTAMGTKEDDFVELLFITTTHHYLLFFTDKGKVYRLKT 394

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P  S  A+G A++N+L++   +++  ++P  E      + Y++ AT++G V++  L 
Sbjct: 395 HEIPEASRTAKGTAIVNLLNITGDDKVNAVIPVKE---FSKDQYLLTATRNGIVKKTVLQ 451

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +    + G IA+ LD  DE++ V+    E+DILL T+ G  VRFP   +R    R + G
Sbjct: 452 QYDSSRKEGLIALTLDDGDELIGVKLTDGESDILLATRNGMAVRFPEGDVREMG-RTTRG 510

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+GI L+K D V++M      D                                      
Sbjct: 511 VKGIELSKDDFVVAMETFKDDD-------------------------------------- 532

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        +  +L ++E G GKRT+  ++R  +R GKGI +  +++  + G +  
Sbjct: 533 -------------KIDLLMITESGMGKRTAVEEYRSQHRGGKGIISMRLTQ--KTGLMAG 577

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  V   D+++++S +G +IR+ V+EI   SR T+GV I     +++VV+V R+   E  
Sbjct: 578 IKVVRPGDELMVISAEGVIIRLNVDEISRFSRVTQGVSIMKINPNDKVVAVARVAMREED 637

Query: 904 DE 905
           DE
Sbjct: 638 DE 639


>gi|262052165|ref|ZP_06024372.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
 gi|259159909|gb|EEW44946.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/886 (31%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|306827497|ref|ZP_07460780.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
 gi|304430295|gb|EFM33321.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
          Length = 819

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 284/892 (31%), Positives = 447/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +                                    E   L    P
Sbjct: 734 ---LRELKTKPHRVFLA------------------------GGVQSDNSAEQFDLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|15926935|ref|NP_374468.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|258434733|ref|ZP_05688807.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|258444691|ref|ZP_05693020.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282892846|ref|ZP_06301081.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
 gi|296275474|ref|ZP_06857981.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|20178001|sp|Q93KF4|PARC_STAAN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13701152|dbj|BAB42447.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|257849094|gb|EEV73076.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|257850184|gb|EEV74137.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282764843|gb|EFC04968.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|73921620|sp|Q5XCJ9|PARC_STRP6 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 819

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 285/892 (31%), Positives = 447/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +                                    E   L    P
Sbjct: 734 ---LRELKTKPHRVFLA------------------------GGVQSDASAEQFDLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|21282971|ref|NP_646059.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|38604913|sp|Q8NWU8|PARC_STAAW RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|21204410|dbj|BAB95107.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKCDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|318062526|ref|ZP_07981247.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actG]
 gi|318078753|ref|ZP_07986085.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actF]
          Length = 822

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 278/748 (37%), Positives = 407/748 (54%), Gaps = 51/748 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + + + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+ 
Sbjct: 16  ADEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLR 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
             + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D PP
Sbjct: 76  PERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPP 135

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  + D + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVG
Sbjct: 136 AAMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I +P+ DLD LM+ + GPD PTG  I+G  GI++AYA GR
Sbjct: 196 MATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIVGLAGIRDAYANGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 256 GSFKTRASVTVENVTARRKGLVVTELPFTVGPEKVVAKIKDLVGSKKLQGIADVKDLTDR 315

Query: 306 QG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           +   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 316 EHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDH 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++     
Sbjct: 376 RFSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEH---- 431

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 432 ----------------------FSLSETQTQYILDTPLRRLTRFDRIELESERDRLNAEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTV 542
           +E   IL S + L  ++  EL +V  +  TPRRT ++E            +  +   V +
Sbjct: 470 EELTAILESDTELRKLVSGELAAVAKKYGTPRRTVLLESADTPVAAIPLQVADDPCRVLL 529

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R P +    +    + +        D +      +    V   +S G + +  
Sbjct: 530 SSTGVIARTPGTEPLQEGSAKRAK-------HDVIRSAVPATARGEVGAVTSAGRLLRIT 582

Query: 603 VWRLPI-----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V  LP      G     G  +   + L   E +  +    E     ++  +   T  G V
Sbjct: 583 VVDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTLDE-----SSPGLAIGTAQGVV 637

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R         NR     + L   D I+   E  T E D++  T   Q +RF  SA+R  
Sbjct: 638 KRVVPD--YPANREELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRP- 694

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHA 744
            GR + GV G+ LA G +V+S  +V  A
Sbjct: 695 QGRPAGGVAGVKLADGAKVLSFDVVDPA 722



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 40/302 (13%)

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G     +L L   +     +P        ++   V  +  G + R   ++ +Q   +   
Sbjct: 498 GTPRRTVL-LESADTPVAAIPL----QVADDPCRVLLSSTGVIARTPGTEPLQEGSA--- 549

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG-------I 727
             K    D I S    T   ++   T  G+ +R  +  +   A      + G       +
Sbjct: 550 --KRAKHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFV 607

Query: 728 SLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            L   + ++ +  +  +            +K +         + E IT  + D  V    
Sbjct: 608 RLEGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPANREELEVITLREGDRIV---- 663

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 EL+  E+ ++ +++     R  +   R   R   G+    ++   +   +++  
Sbjct: 664 ---GAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAK---VLSFD 717

Query: 846 PVNDNDQIILVSDKG-----------TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V+      + +  G           T    P ++     RAT GV      K E  +S 
Sbjct: 718 VVDPAVDAAVFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGRATGGVRCQRFLKGEDCLSF 777

Query: 895 ER 896
             
Sbjct: 778 AW 779


>gi|322411913|gb|EFY02821.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 819

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 283/889 (31%), Positives = 453/889 (50%), Gaps = 84/889 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+S 
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIITLQNEENDLRELITTLSAIVSD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQTIEIDIASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    ++ L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDDLIFVKQAKTTEHLLLFTTLGNVIYRPIYELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    +  T++G  +R +  +      
Sbjct: 571 KDIGEHLSQTISNFATDEEIL----YADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D++D ++++     E+ +LL T  G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDAKDRVVTLTPIVMED-LLLVTYYGYALRFSSQDV-PIQGLKSSGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +L   D+++S   V             +    A +R+   D  + +       V     
Sbjct: 685 TNLKNEDKLVSAFSVTS------NSFFVLTQRGALKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKAKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V++
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVLA 815


>gi|114152112|sp|P0C1U9|PARC_STAAU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777318|dbj|BAA11085.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
          Length = 800

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|259500635|ref|ZP_05743537.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
 gi|302191324|ref|ZP_07267578.1| DNA topoisomerase IV subunit A [Lactobacillus iners AB-1]
 gi|259168019|gb|EEW52514.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
          Length = 831

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 446/855 (52%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE    ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYTKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLTFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D +  
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLT----- 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|282920623|ref|ZP_06328344.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
 gi|282594285|gb|EFB99272.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
          Length = 800

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/886 (31%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|313885206|ref|ZP_07818958.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619897|gb|EFR31334.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 829

 Score =  549 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 285/892 (31%), Positives = 454/892 (50%), Gaps = 96/892 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   + I  ++ +D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +     + 
Sbjct: 2   QANNQNIEELTFSDILGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYEDRNTADN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G V+G +HPHG++++Y+A+ RM+QDW  R  LI+  GN GS+DGDP AA R
Sbjct: 62  PYRKSAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKNRQPLIDMHGNNGSMDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+  DTVD+  N+D S +EP+VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTEARLSKIAMELLRDIHMDTVDYALNFDDSLEEPMVLPARFPNLLVNGATGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  V ++ +    L  +M+ I+GPDFPTG ++ G  G+K  Y +G G IV
Sbjct: 182 IPPHNLGEVIDAAVYMLSHDTYTLADIMKFIKGPDFPTGTILQGAKGLKAIYKSGHGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE   G + QIV+TE+PY+VNK+ ++++I ++  ++++  +AD+RDESDR G R
Sbjct: 242 LRSTSTIESLKGGKSQIVITELPYEVNKSKLIQRIDDIRIQRKVEGMADVRDESDRNGTR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+ ILN L++ T LQ  +  NM+A+N  +P    LI +L+A++A ++EV+
Sbjct: 302 LVIEIKREADAEQILNYLFKNTDLQINYHFNMIAINQRRPHEVGLIDMLEAYIAHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT+Y LNK + R H++ GL   V+ LD+V+  IR S +   A+  L +          
Sbjct: 362 LRRTQYSLNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S  Q  AI+ L+L RLT      ++NE   L   I    +
Sbjct: 413 -----------------FDFSLDQAEAIVSLQLYRLTNTDIVALQNERLELNERIGMYHN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGY 547
           ILS    L   +  EL +VK    +PRRT+I   + ++  E    +  E ++VTV+  GY
Sbjct: 456 ILSKDKSLKATLINELKAVKKAFPSPRRTQIEVEIEEINIEQSLLVNEEQVMVTVTKEGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +        G      R+ D+V     +ST+ +++  ++ G      V  LP
Sbjct: 516 IKRTSLRSFATSDTMDLGV-----RELDYVIFAQELSTYQALVLITNKGQYIHLPVHELP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPED-----ESSWNNLYVVFATKHGNVRRNKL 662
               +  G  L    +L  GE++  + P   D      + + + Y+V ATK G +++  L
Sbjct: 571 DIRWKDLGMHLSQQYNLTDGEQVVFVSPASRDINDQELAEYKDQYLVMATKEGMIKKTPL 630

Query: 663 SDFIQIN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVF 716
           +DF+           AMK+    DEI+ V    Q+    ++L T+    +R+P++ +  +
Sbjct: 631 TDFVSYRTYKSRPSQAMKMKTETDEIIGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSEY 690

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
               + GV  I+L K D + +  +                                    
Sbjct: 691 GL-KAQGVTAINLKKDDYLAAFLLDNQG-------------------------------- 717

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               +  I+ ++++G  KR  +     + R  +GI      K N
Sbjct: 718 -----------------MESQAQIILMTQRGNIKRFDNQIIADARRGSRGILMLKELKNN 760

Query: 837 EIGALVAVFPVNDNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
               L A   + D DQ++ V+ D G ++ +   ++  + R   G  +    K
Sbjct: 761 PHRVLSAAL-IQDLDQMLEVTGDTGFVVTIQARQVPKSDRLANGSSLDQLDK 811



 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 95/255 (37%), Gaps = 52/255 (20%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               +V  TK G ++R  L  F     S  + + +   D ++  +  +    ++L T  G
Sbjct: 503 EEQVMVTVTKEGYIKRTSLRSFAT---SDTMDLGVRELDYVIFAQELSTYQALVLITNKG 559

Query: 704 QCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           Q +  P+  +        +G+   +  +L  G+QV+ ++       D +           
Sbjct: 560 QYIHLPVHEL-PDIRWKDLGMHLSQQYNLTDGEQVVFVSPASRDINDQELAEY------- 611

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                              K+Q+++  +++G  K+T   DF +S
Sbjct: 612 -----------------------------------KDQYLVMATKEGMIKKTPLTDF-VS 635

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATK 878
            R+ K   +  +    E   ++ V  V  +   Q+IL+++K   +R P+ E+       +
Sbjct: 636 YRTYKSRPSQAMKMKTETDEIIGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSEYGLKAQ 695

Query: 879 GVVIFSTAKDERVVS 893
           GV   +  KD+ + +
Sbjct: 696 GVTAINLKKDDYLAA 710


>gi|15924345|ref|NP_371879.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979674|ref|YP_001441933.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317050|ref|ZP_04840263.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006143|ref|ZP_05144744.2| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258413399|ref|ZP_05681675.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|258447474|ref|ZP_05695618.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|258449315|ref|ZP_05697418.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|258454695|ref|ZP_05702659.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|269202978|ref|YP_003282247.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282928914|ref|ZP_06336503.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|20178000|sp|Q931S2|PARC_STAAM RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14247126|dbj|BAB57517.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721809|dbj|BAF78226.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839963|gb|EEV64431.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|257853665|gb|EEV76624.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|257857303|gb|EEV80201.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|257863078|gb|EEV85842.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|262075268|gb|ACY11241.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589423|gb|EFB94513.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|285817033|gb|ADC37520.1| Topoisomerase IV subunit A [Staphylococcus aureus 04-02981]
          Length = 800

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 817

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 278/803 (34%), Positives = 416/803 (51%), Gaps = 54/803 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V ++ EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +VK
Sbjct: 12  ERIEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMAEMGLRPDRGHVK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEVMGK HPHG+A IYDAL R+AQ +SLR+ L++G GNFGS+D D PAA RYTE 
Sbjct: 72  SARVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSLD-DGPAAPRYTEA 130

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L ++L +D VDF PNYDG FQ+P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 131 RLAAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGATGIAVGMATNMAPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV     ++ NPD  ++ LME + GPD P+G +I+G  GIK+AY  GRGS   R  
Sbjct: 191 NLIEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIVGLDGIKDAYTNGRGSFRTRAK 250

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
           S IE     R  IV+TE+PY V    ++EKI + V+ K++  IAD+ D +DR    R+VI
Sbjct: 251 SSIESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVTDLTDRNNGLRLVI 310

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            +K G     +L QLYR T L+  F +N VAL   +P+   L  +L+ ++  R  VV RR
Sbjct: 311 GIKTGFDPKAVLEQLYRLTPLEDSFGINNVALVDGQPQTLGLRDMLRVYIDHRIRVVTRR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L + R+R H++ GL IA+ ++DEV+++IR S + E AR +L +             
Sbjct: 371 SEYRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKLQE------------- 417

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS  Q   ILELRL RLT   R ++  E + L  EI + +++L 
Sbjct: 418 -------------VFDLSHPQAEYILELRLRRLTKFSRIELEAERDQLNAEIAQLVELLG 464

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDMVVTVSH 544
           S + L   + +EL +  +   TPRRT ++ G              +  I      V +S 
Sbjct: 465 SETLLRQQVAKELDAAAEAYGTPRRTLLLNGGPVQPRSAKAAAAADLQIADAPCRVYLSA 524

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G + R   +   A    G           D +      +T   +   +S G + +    
Sbjct: 525 TGRMVR---AELIADAPAGGVVPPTRRSKHDAIRSAVDTTTRGEIGAVTSAGRLVRFSPV 581

Query: 605 RLPIGSPQ----ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            LP         A G  +   L+L +GE +  ++P        +   +   T+ G V+R 
Sbjct: 582 DLPSVPANSVQLAAGTKVEQYLALAKGETVVALVPLS------DGPTIALGTEQGVVKRV 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S+     +     + L   D ++         +++      Q +RF  S++R   GR+
Sbjct: 636 AASELG--TKPEIEIIALRDGDRVVGAAPAGDNAELVFVASDAQLLRFDASSVRP-QGRS 692

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + G+ GI L+ G +VI+ A++    + +D  +  +   +A        + ++++     +
Sbjct: 693 ASGMAGIRLSDGARVIAFAVI--GASAFDAVVVTVAGSTAALPGTDAGSAKVSAFTEYPA 750

Query: 781 VEGNISEERCQELKLKEQFILTV 803
                   R Q L   E  ++  
Sbjct: 751 KGRATGGVRAQRLLRGEDALVLA 773



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E+G  KR ++ +        K     ++  + +   +V   P  DN +++ V+    L+
Sbjct: 627 TEQGVVKRVAASEL-----GTKP--EIEIIALRDGDRVVGAAPAGDNAELVFVASDAQLL 679

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           R   + +R   R+  G+     +   RV++   I
Sbjct: 680 RFDASSVRPQGRSASGMAGIRLSDGARVIAFAVI 713



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 22/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN---SVGVRG---ISLAKGDQV 735
           D I S    T   +I   T  G+ VRF    +      +   + G +    ++LAKG+ V
Sbjct: 552 DAIRSAVDTTTRGEIGAVTSAGRLVRFSPVDLPSVPANSVQLAAGTKVEQYLALAKGETV 611

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +++  +             +    A   L +    EI +L++   V G            
Sbjct: 612 VALVPLSDGPTIALGTEQGVVKRVAASELGTKPEIEIIALRDGDRVVGAAP-------AG 664

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA---------VFP 846
               ++ V+      R  +   R   RS  G+    +S    + A            V  
Sbjct: 665 DNAELVFVASDAQLLRFDASSVRPQGRSASGMAGIRLSDGARVIAFAVIGASAFDAVVVT 724

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +   +  +D G+       E     RAT GV      + E  + +  +
Sbjct: 725 VAGSTAALPGTDAGSAKVSAFTEYPAKGRATGGVRAQRLLRGEDALVLAWV 775


>gi|50914075|ref|YP_060047.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
 gi|50903149|gb|AAT86864.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
          Length = 821

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/892 (31%), Positives = 447/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 573 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 628

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 629 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D + S   V             +    + +R+   D  + +       V     
Sbjct: 687 INLKNDDSLASAFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 735

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +                                    E   L    P
Sbjct: 736 ---LRELKTKPHRVFLA------------------------GGVQSDASAEQFDLFTDIP 768

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|148267844|ref|YP_001246787.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393906|ref|YP_001316581.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257795589|ref|ZP_05644568.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|258420495|ref|ZP_05683437.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|295406299|ref|ZP_06816106.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244528|ref|ZP_06928411.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|147740913|gb|ABQ49211.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946358|gb|ABR52294.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257789561|gb|EEV27901.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|257843443|gb|EEV67850.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|294968887|gb|EFG44909.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178558|gb|EFH37804.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|315131158|gb|EFT87142.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727393|gb|EGG63849.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 800

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 825

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 286/778 (36%), Positives = 437/778 (56%), Gaps = 49/778 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I ++S+   M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + 
Sbjct: 3   DAKIETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  L+E  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + +I +PD  L+ LME I GPDFPTG ++ G  GIK AY TGRG IV+R 
Sbjct: 183 HNLGEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGGIVQGADGIKKAYQTGRGRIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI VTEIPY+VNKA ++++I +L   K++  I + RDE+DR G R+ I
Sbjct: 243 KTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++AF++EVV RR
Sbjct: 303 ELKRNANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKHILTSYLAFQKEVVRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L+KA+ R H++ GL  A++ LD+V++ IR S N + A++ L+ +            
Sbjct: 363 TSYNLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQ------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            ++VQ  AI+ L+L RLT     ++ +E   L   I E   ILS
Sbjct: 411 --------------YAFTDVQAEAIVTLQLYRLTNTDVTELEDEQQHLTDLIDEYQLILS 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++++E+ +VK E   PRRT+I      L+++ +  +  ED+VV VSH GY+KR
Sbjct: 457 DDEELSKVVRREMQAVKKEFGNPRRTQIENQVEKLEIDTKVTVANEDVVVLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A      G     +R++D+   +   +T   +  F++ G V    V  L    
Sbjct: 517 SSIRSFKASSLDEDG-----LREDDYPLLITQTNTLAHLFMFTNRGHVIYRPVHELADVR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ +   + L + E I   M F   +        +F T  G V+++   D+    +
Sbjct: 572 WKDTGEHISQTIGLAEDEEIIKAMVF---DKLDLPGSFIFGTSDGQVKQSAYKDYQPGSR 628

Query: 668 INRSGKIAMKLDSRD-EILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 +A+KL S+D  ++SV   E   +   +L  ++ G  VRF ++ + V   R + G
Sbjct: 629 YKSHASMAVKLKSKDATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPVTGLRTA-G 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VR I+L   D ++ + +V        +R+  +    A + +   +       +    V
Sbjct: 688 VRAINLKDDDALVDLVLVKDG-----QRVASITQRGAFKEMPIDEIAVGARARRGELV 740



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 82/223 (36%), Gaps = 23/223 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ--------VISMA 739
            T   E+ ++L +  G   R  I + +  +           L + D          ++  
Sbjct: 497 VTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDG------LREDDYPLLITQTNTLAHL 550

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +         R  +       +      ++ I   +++  ++  +      +L L   F
Sbjct: 551 FMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLAEDEEIIKAMV----FDKLDLPGSF 606

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ---IILV 856
           I   +  G  K+++  D++  +R  K   +  V   ++   +V+V      D+   ++ +
Sbjct: 607 IFG-TSDGQVKQSAYKDYQPGSRY-KSHASMAVKLKSKDATVVSVDYYEPTDENRSLLAI 664

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           S +G  +R  V ++ +    T GV   +   D+ +V +  +++
Sbjct: 665 SREGYAVRFDVADVPVTGLRTAGVRAINLKDDDALVDLVLVKD 707



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 92/248 (37%), Gaps = 23/248 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   VV  +  G ++R+ +        S      L   D  L +        + + T  G
Sbjct: 501 NEDVVVLVSHAGYIKRSSI---RSFKASSLDEDGLREDDYPLLITQTNTLAHLFMFTNRG 557

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHAD---------ADYDER 751
             +  P+  +         G    + I LA+ +++I   +    D         +D   +
Sbjct: 558 HVIYRPVHEL-ADVRWKDTGEHISQTIGLAEDEEIIKAMVFDKLDLPGSFIFGTSDGQVK 616

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               K      R  S  +  +     D++V          E   + + +L +S +G+  R
Sbjct: 617 QSAYKDYQPGSRYKSHASMAVKLKSKDATVVSV----DYYEPTDENRSLLAISREGYAVR 672

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               D  ++     G+RA ++   +   ALV +  V D  ++  ++ +G    +P++EI 
Sbjct: 673 FDVADVPVTGLRTAGVRAINLKDDD---ALVDLVLVKDGQRVASITQRGAFKEMPIDEIA 729

Query: 872 IASRATKG 879
           + +RA +G
Sbjct: 730 VGARARRG 737



 Score = 39.1 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
             ++ ++  +       ++ +S  GY  R  ++          G   + ++D+D + DL 
Sbjct: 644 ATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDALVDLV 703

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +V     V   +  G   +  +  + +G+   RG+ +++ L  +   +I   + +  D
Sbjct: 704 LVKDGQRVASITQRGAFKEMPIDEIAVGARARRGELVLHRLKSHP-HKIADFLAYDAD 760


>gi|312872926|ref|ZP_07732986.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874231|ref|ZP_07734265.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|329920252|ref|ZP_08277036.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
 gi|311090301|gb|EFQ48711.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091448|gb|EFQ49832.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|328936297|gb|EGG32745.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 831

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 445/855 (52%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLTFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D +  
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLT----- 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|82750948|ref|YP_416689.1| DNA topoisomerase IV subunit A [Staphylococcus aureus RF122]
 gi|82656479|emb|CAI80901.1| topoisomerase IV subunit A [Staphylococcus aureus RF122]
          Length = 800

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A    H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D ++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDNLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 106/254 (41%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   ++     ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDNLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---NLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|57650359|ref|YP_186243.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195080|ref|YP_499880.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221480|ref|YP_001332302.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509520|ref|YP_001575179.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253733398|ref|ZP_04867563.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451753|ref|ZP_05699777.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|262049828|ref|ZP_06022691.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300912075|ref|ZP_07129518.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81694551|sp|Q5HG64|PARC_STAAC RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|114152111|sp|Q2FYS4|PARC_STAA8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777321|dbj|BAA11087.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
 gi|57284545|gb|AAW36639.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202638|gb|ABD30448.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374280|dbj|BAF67540.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368329|gb|ABX29300.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728666|gb|EES97395.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257860584|gb|EEV83408.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|259162052|gb|EEW46631.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300886321|gb|EFK81523.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315196387|gb|EFU26739.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140313|gb|EFW32171.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143914|gb|EFW35686.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329730889|gb|EGG67265.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733685|gb|EGG70013.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 800

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|298694655|gb|ADI97877.1| Topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/889 (30%), Positives = 456/889 (51%), Gaps = 100/889 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             L S      G +     N+I  + + T G  I  T     V+ +  I
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDMYII 800



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|119963748|ref|YP_947533.1| DNA topoisomerase IV subunit A [Arthrobacter aurescens TC1]
 gi|119950607|gb|ABM09518.1| putative DNA gyrase subunit A [Arthrobacter aurescens TC1]
          Length = 838

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 289/832 (34%), Positives = 423/832 (50%), Gaps = 76/832 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++ 
Sbjct: 16  DFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLRPDRG 75

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PAA RY
Sbjct: 76  HVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPAAPRY 134

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  AA  + D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATN+
Sbjct: 135 TEARLAAAALTMTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGTTGIAVGMATNM 194

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     +I NP   L+ +M  I GPD PTG  I+G  G+++AYATGRGS   
Sbjct: 195 PPHNLVEVIAAARHLIANPGATLEEIMRFIPGPDLPTGGRIVGLDGVRDAYATGRGSFKT 254

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR    R
Sbjct: 255 RAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNSKKLTGISDVVDLTDRNHGLR 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L+ +V  R  VV
Sbjct: 315 LVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLLQLLQVYVEHRLNVV 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM           
Sbjct: 375 RRRTSFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEASAARERLMS---------- 424

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q   ILELRL +LT   R ++  E + L  EI+    
Sbjct: 425 ----------------IYDLTEIQANYILELRLRQLTKYSRLELEKEQDELRREIEALEA 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-------------------LDMEDE 530
           IL+S   L  ++  EL  + ++  TPRRT ++E                           
Sbjct: 469 ILASDELLRDLVSGELAVIAEKYGTPRRTVLLESEAVSPTVAAALAASVPGPKGKAAALP 528

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I  +     +S  G + R       A        +G   +  D    +   +    + 
Sbjct: 529 LEIPDDPCWALLSVSGQIARTSNQEPLA-------EAGPRTK-HDVFRSVVKTTARGEIG 580

Query: 591 FFSSLGFVYKEKVWRLPIGSP------QARGKALINILSLNQGERITTIMPFPEDESSWN 644
             +S G + + +V  +P+  P       A G    + ++L +GE +   +P         
Sbjct: 581 AVTSQGRMLRLQVMDMPVLPPVSGLPNLAGGVPAKDFITLLKGETLVAFVPL-------- 632

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLG 703
           +  +   T  G V+R +      +NR     + L  +D +L+VE    +N D++  T+  
Sbjct: 633 DAVLAIGTVQGVVKRVQPD--YPLNREDWEIIALKDKDLVLAVEPAQDDNVDLVFVTRQA 690

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +RF  S +R   GR + G+ GI LA GD+VI    V   D      +  +   +    
Sbjct: 691 QLLRFSASNVRP-QGRTAGGMAGIKLAAGDEVIHFGTVRADD--PAAVVVTIAGTNGALP 747

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSS 814
             +  T ++T+ +   +        R       E  +L   +  G  K +S+
Sbjct: 748 GTAPGTAKVTAFEEYPAKGRATGGVRVHRFLKGEDTLLMAWAGHGPAKASSA 799



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 45/273 (16%)

Query: 641 SSWNNLYVVFATKHGNVRRN----KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
              ++      +  G + R      L++     +           D   SV   T   +I
Sbjct: 530 EIPDDPCWALLSVSGQIARTSNQEPLAEAGPRTKH----------DVFRSVVKTTARGEI 579

Query: 697 LLTTKLGQCVRFPISAIRVFAG-----RNSVGVRG---ISLAKGDQVISMAIVLHADADY 748
              T  G+ +R  +  + V          + GV     I+L KG+ +++  + L A    
Sbjct: 580 GAVTSQGRMLRLQVMDMPVLPPVSGLPNLAGGVPAKDFITLLKGETLVAF-VPLDAVLAI 638

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +K +     L   D E I     D  +    +++           ++ V+ +  
Sbjct: 639 GTVQGVVKRVQPDYPLNREDWEIIALKDKDLVLAVEPAQD-------DNVDLVFVTRQAQ 691

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV------------ 856
             R S+ + R   R+  G+    ++  +E   ++    V  +D   +V            
Sbjct: 692 LLRFSASNVRPQGRTAGGMAGIKLAAGDE---VIHFGTVRADDPAAVVVTIAGTNGALPG 748

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +  GT       E     RAT GV +    K E
Sbjct: 749 TAPGTAKVTAFEEYPAKGRATGGVRVHRFLKGE 781



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           + +G  KR    D+ + NR    I A       +   ++AV P  D++  ++ V+ +  L
Sbjct: 640 TVQGVVKRVQP-DYPL-NREDWEIIALK-----DKDLVLAVEPAQDDNVDLVFVTRQAQL 692

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +R   + +R   R   G+     A  + V+    +R  +
Sbjct: 693 LRFSASNVRPQGRTAGGMAGIKLAAGDEVIHFGTVRADD 731


>gi|283470570|emb|CAQ49781.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/886 (31%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E I  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVIINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+VI + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVI-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVIINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 818

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 294/821 (35%), Positives = 426/821 (51%), Gaps = 64/821 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +       ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M 
Sbjct: 5   STKTPPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPVVL A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G  GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLGGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YTAGRGSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM 
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMA 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 H--------------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L  EI     IL S + L  ++  EL +V  +  T RRT ++E            +  + 
Sbjct: 459 LSGEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGAQIASVPLEVADDP 518

Query: 538 MVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             V +S  G + R     P+ +    RR             D +      +    V   +
Sbjct: 519 CRVLLSSTGLLARTANAEPVEISEDARR----------TKHDVIVSAVAATARGDVGAVT 568

Query: 594 SLGFVYKEKVWRLPI-----GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLY 647
           S G + +  V  LP        P   G A +   LSL   E +  +    E     ++  
Sbjct: 569 STGRMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEADEELVCLTTLDE-----SSPG 623

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCV 706
           +   T  G V+R         N+     + L   D ++   E  T E D++  T   Q +
Sbjct: 624 LAIGTLQGVVKRVVPD--YPPNKDELEVISLKDGDRVVGATELRTGEEDLVFITSDAQLL 681

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R+P +++R   GR + G+ G+ LA G +V+S   V  A     E I +    S      S
Sbjct: 682 RYPAASVRP-QGRPAGGMAGVKLAAGAEVLSFTAVDPAS----EAIVFTVAGSHGTLDDS 736

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             T ++T               RCQ   LK + +L  +  G
Sbjct: 737 VLTSKLTPFDQYPRKGRATGGVRCQRF-LKGEDVLVFAWAG 776



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 94/272 (34%), Gaps = 32/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ ++I+   +        D I+S    T   D+   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANAEPVEISEDARRTKH----DVIVSAVAATARGDVGAVTSTG 571

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS----LAKGDQVISMAIVLHADADYD-ERICY 754
           + +R  +  +      ++     G   IS    L   ++++ +  +  +        +  
Sbjct: 572 RMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEADEELVCLTTLDESSPGLAIGTLQG 631

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +          + D  E+ SLK+   V G        EL+  E+ ++ ++      R  +
Sbjct: 632 VVKRVVPDYPPNKDELEVISLKDGDRVVG------ATELRTGEEDLVFITSDAQLLRYPA 685

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLIR 864
              R   R   G+    ++   E   +++   V+   + I+ +  G          T   
Sbjct: 686 ASVRPQGRPAGGMAGVKLAAGAE---VLSFTAVDPASEAIVFTVAGSHGTLDDSVLTSKL 742

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E V+    
Sbjct: 743 TPFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 774



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 70/229 (30%), Gaps = 23/229 (10%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +  +I SV     ++    L +  G   R   +     +             K D ++S
Sbjct: 502 SAGAQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISE-------DARRTKHDVIVS 554

Query: 738 -MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--- 793
            +A     D         M  +S        +T    +L   + +   +S E  +EL   
Sbjct: 555 AVAATARGDVGAVTSTGRMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEADEELVCL 614

Query: 794 ---KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-ND 849
                    +   + +G  KR    D+     +   +    +   +    +V    +   
Sbjct: 615 TTLDESSPGLAIGTLQGVVKRV-VPDYPP---NKDELEVISLKDGDR---VVGATELRTG 667

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            + ++ ++    L+R P   +R   R   G+     A    V+S   + 
Sbjct: 668 EEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVD 716


>gi|228475990|ref|ZP_04060698.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
 gi|228269813|gb|EEK11293.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
          Length = 799

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/886 (32%), Positives = 463/886 (52%), Gaps = 101/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  ID+P+I ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 DEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+ +++  + EVV  RT Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVANRTTY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A  R H++ GL  A++ LDEV+ +IR S N + A+  L++                
Sbjct: 365 DLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   I+E  +IL +  
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  ++    T R + I   + +++ +    +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKKELTEIRKRFKTSRLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V +++ D +     V+T  + L F++ G      + ++     + 
Sbjct: 519 RSFNAS-----GVTEVGLKEGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+SL + ERI  +     +++     + + AT++G ++++  S F     +  
Sbjct: 574 LGQHVSQIVSLEENERIIDVF---NEKTFDGKAFYIIATRNGMIKKSNQSLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA KL + DE+++V   TQE  I + T  G  + +    +     R + GV+ I+L   
Sbjct: 631 LIATKLKNEDEVVNVLRITQEQMITVITHKGMSLTYSTEELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI    V   ++                                              
Sbjct: 690 DYVIMTDTVDKNNS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+  +++G  KR +    + + R+ +GI      K N    +VA   V D   
Sbjct: 704 -------IIMATQRGAIKRIAKDILQDAKRAQRGITLLKELKKNPH-RIVAAHVVRDETY 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L SDK    G + R+ ++E     + T G  +  T +   V S+
Sbjct: 756 YTLYSDKHAETGEISRIHLSE-----QYTNGSFVVDTNEFGNVKSM 796


>gi|282916616|ref|ZP_06324374.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770422|ref|ZP_06343314.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319103|gb|EFB49455.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460569|gb|EFC07659.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|302332971|gb|ADL23164.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|313890155|ref|ZP_07823790.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121516|gb|EFR44620.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 819

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 278/887 (31%), Positives = 460/887 (51%), Gaps = 80/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL+D+ K+TV F  N+D + +EP VL A YPN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLEDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTG++I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSIIQGQDEIRKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +  IL +++A R+ +++ R+
Sbjct: 302 LKKDADTQTVLNYLLKYTDLQVNYNFNMVAIDNYTPHQVGIQKILSSYIAHRKSIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ + KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   LG  I     I++ 
Sbjct: 408 ------------SYAFTEEQAEAIVTLQLYRLTNTDIVTLQNEEEELGNLITTLRAIIAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PRR+++      ++++    IV E+  V+++  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFGNPRRSQLQKEAETIEIDTASLIVEEETFVSLTQGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+ LG V    V  L     
Sbjct: 516 SPRSFNASTLEEIGK-----RDDDSLIFVASAKTTQHLLIFTDLGNVIYRPVHELQDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E++     + E    + +      T+ G ++R + ++      
Sbjct: 571 KEIGEHLSQTITNYGNDEKVL----YAELVDDFKSGTYYSVTQLGQIKRFERAELAPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   + +D I++V+    E+ I+L +  G  +RF  +      G  + GV+ 
Sbjct: 627 YRSKSLKYAKLKNEQDRIIAVQPILFED-IMLISHQGYALRFS-NEEVPVQGLKTAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L K D + S  +       Y +    +    + +R+ + D  + +       V     
Sbjct: 685 MNLKKDDYIASAFLA------YTDSFFVLTQRGSLKRVATEDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G  K  +S             +  D+    +  +  ++  
Sbjct: 734 ---LRELKNKPHRVFLA---GAVKGLASN------------KTIDLFSDPQTDSEASLR- 774

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 ++++S  G    V +    ++ R + G  I  T  D+ V+S
Sbjct: 775 ------LLVISKTGQEYLVDLGGYSVSERTSNGTFISDTISDQEVLS 815


>gi|312829751|emb|CBX34593.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|304381068|ref|ZP_07363722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340377|gb|EFM06317.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314033|gb|AEB88446.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 800

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|323441139|gb|EGA98846.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O11]
 gi|323444007|gb|EGB01618.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O46]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEDVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEDVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEDVSENDTI 704


>gi|314936491|ref|ZP_07843838.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655110|gb|EFS18855.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 799

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/886 (32%), Positives = 464/886 (52%), Gaps = 101/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  ID+P+I ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 DEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+ +++  + EVV  RT Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVANRTTY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A  R H++ GL  A++ LDEV+ +IR S N + A+  L++                
Sbjct: 365 DLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   I+E  +IL +  
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  ++    T R + I   + +++ +    +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKKELTEIRKRFKTSRLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + V +++ D +     V+T  + L F++ G      + ++     + 
Sbjct: 519 RSFNAS-----GVTEVGLKEGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+SL + ERI  +     +++     + + AT++G ++++  S F     +  
Sbjct: 574 LGQHVSQIVSLEENERIIDVF---NEKTFDGKAFYIIATRNGMIKKSNQSLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA KL + DE+++V   TQE  I++ T  G  + +    +     R + GV+ I+L   
Sbjct: 631 LIATKLKNEDEVVNVLRITQEQMIIVITHKGMSLTYSTEELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI    V   ++                                              
Sbjct: 690 DYVIMTDTVDKNNS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+  +++G  KR +    + + R+ +GI      K N    +VA   V D   
Sbjct: 704 -------IIMATQRGAIKRIAKDILQDAKRAQRGITLLKELKKNPH-RIVAAHVVRDETY 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L SDK    G + R+ ++E     + T G  +  T +   V S+
Sbjct: 756 YTLYSDKHAETGEISRIHLSE-----QYTNGSFVVDTNEFGNVKSM 796


>gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065]
          Length = 956

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 303/949 (31%), Positives = 478/949 (50%), Gaps = 90/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ DV+   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGIRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +LK +V  ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKSMLKYYVEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+++                             +++Q  AILEL L +LTGL     
Sbjct: 418 RENLIEK--------------------------FSFTDIQAEAILELMLYKLTGLEVVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   I +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+
Sbjct: 452 EKEYKELEKLINKLTKILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++  
Sbjct: 512 IIVEEDVVLTLSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I         E+      ++F
Sbjct: 569 VTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKTIDLSETIMEAFSI---EAFTAQKDMLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  +A+KL   + ++  +      +E    + T+ G    
Sbjct: 626 ITDSGYIKKTTL-DKFNTNYTKIMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQ 761
               ++     RN +G +   +   D +  +    + +          E +  +  +   
Sbjct: 685 IEEPSLEPV-DRNIIGYKLFDILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDN 743

Query: 762 RRLIS--GDTEEITSLKNDSSVEGNISEERCQELK------------------------- 794
           +  IS   D+ +I  L +D      I     Q +K                         
Sbjct: 744 KSHISLFTDSSKILVLFDDEGKAYYIPAFMFQSIKEEGINISAFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            ++  I   SEKG  KRT   + +I   S +  +       ++   LV++      +Q  
Sbjct: 804 EEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKF-----KHKEDKLVSILIKEHGEQKN 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I+++++K  +IR     +    +   GV   S    ++V+    I E++
Sbjct: 859 ILIITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+   ++ F   G  Y    +     S +  G  +        G++I
Sbjct: 740 LKDNKSHISLFTDSSK-ILVLFDDEGKAYYIPAFMFQ--SIKEEGINISAF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           + +           ++ + F+++ G ++R  LS+      S ++       D+++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIK 851

Query: 691 TQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                  IL+ T+    +RF   A+     + + GV GISL   D+VI  +I+   D   
Sbjct: 852 EHGEQKNILIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILASIIDENDTRK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKAKDK 920


>gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 554

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 286/549 (52%), Positives = 384/549 (69%), Gaps = 9/549 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH
Sbjct: 486 AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 545

Query: 545 LGYVKRVPL 553
            GYVK  PL
Sbjct: 546 QGYVKYQPL 554


>gi|269940853|emb|CBI49235.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +I  S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIHSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|284024356|ref|ZP_06378754.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           132]
          Length = 800

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|255326306|ref|ZP_05367392.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
 gi|255296760|gb|EET76091.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
          Length = 841

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/758 (35%), Positives = 406/758 (53%), Gaps = 69/758 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM+ S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ ++LRL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +P+  L  +M+ I GPD PTG  I+G  GI++AY TGRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGIRDAYETGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IE+ S  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR    R+VI
Sbjct: 257 VSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLTDRTNGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G + + +L  LY++T L+  F +N VAL   +P+   L+ +++ ++  R  VV RR
Sbjct: 317 EIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLDLMRVYIDHRLNVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K  DR H++ GL +A+ ++DEV++IIR S     AR +L               
Sbjct: 377 TEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL--------------- 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q   ILELRL +LT   R ++  E  +L  EI E   IL 
Sbjct: 422 -----------KVVFDLTDTQANHILELRLRQLTKYSRLELEAERETLQQEIAELQRILG 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI---------VEGLLDMEDEDC-------IVRE 536
           S + L  ++ +EL  V +   T RRT++         +E +               I  +
Sbjct: 471 SDAALRELVSEELAEVAERYGTDRRTQLKTKDEMQVAIEAVTAQSKTKKSLGLALEIADD 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P        R      G   +  D  T +   +    +   +S G
Sbjct: 531 PCWVLLSASGMMGRTPGKPI----REALVDPGKRFK-HDVFTSIVPTTARGEIGAVTSAG 585

Query: 597 FVYKEKVWRLPIGSPQARGKA-------LINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + +  V  + +      G            ++ L +GE++  ++P         N  + 
Sbjct: 586 RMVRLSVMDIAVLDENG-GTPSMASAVKAAELVQLAKGEKLVALVPL--------NTVLA 636

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI-LLTTKLGQCVRF 708
            AT  G ++R  L+    +N++    MKL   DEI++   C  ++ +    T+  + + F
Sbjct: 637 LATAGGVIKR--LNPDYPLNQTEWDIMKLKDGDEIVAAAPCPTDDAVLTFVTRDAKLLTF 694

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + +R   GR   G+ GI LA GD++I++ +    DA
Sbjct: 695 DAAKVRP-QGRTGGGIAGIKLADGDRLIALGVTAPGDA 731



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 24/266 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R        I  +     K    D   S+   T   +I   T  G
Sbjct: 529 DDPCWVLLSASGMMGRTPGK---PIREALVDPGKRFKHDVFTSIVPTTARGEIGAVTSAG 585

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  I V          +  V+    + LAKG++++++ + L+           +
Sbjct: 586 RMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVAL-VPLNTVLALATAGGVI 644

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K ++    L   + + +     D  V               +  +  V+         + 
Sbjct: 645 KRLNPDYPLNQTEWDIMKLKDGDEIVAA-------APCPTDDAVLTFVTRDAKLLTFDAA 697

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK----GTLIRVPVNEIR 871
             R   R+G GI    ++  + + AL  V    D  +++ V++      +     ++E  
Sbjct: 698 KVRPQGRTGGGIAGIKLADGDRLIAL-GVTAPGDAAEVVTVTNGKDGLASAKVTALSEYP 756

Query: 872 IASRATKGVVIFSTAKDERVVSVERI 897
              RAT GV        E  +++  +
Sbjct: 757 QKGRATGGVRAHRFLTGESQLALAWV 782



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 22/225 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
                 +   +L +  G   R P         R ++   G         +  +IV     
Sbjct: 524 ALEIADDPCWVLLSASGMMGRTPG-----KPIREALVDPGKRFKHD---VFTSIVPTTAR 575

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                     R+  +  M       +G T  + S    + +      E+   L      +
Sbjct: 576 GEIGAVTSAGRMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVL 635

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LVSDK 859
              +  G  KR +  D+ +           D+ K+ +   +VA  P   +D ++  V+  
Sbjct: 636 ALATAGGVIKRLNP-DYPL------NQTEWDIMKLKDGDEIVAAAPCPTDDAVLTFVTRD 688

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             L+     ++R   R   G+     A  +R++++      +  +
Sbjct: 689 AKLLTFDAAKVRPQGRTGGGIAGIKLADGDRLIALGVTAPGDAAE 733



 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 29/180 (16%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ- 791
            ++  +  +L +DA   E +       A+R      T+  T  +   ++E   ++ + + 
Sbjct: 460 QEIAELQRILGSDAALRELVSEELAEVAERYGTDRRTQLKTKDEMQVAIEAVTAQSKTKK 519

Query: 792 ------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGALVA 843
                 E+     ++L  S  G   RT           GK IR    D  K  +     +
Sbjct: 520 SLGLALEIADDPCWVLL-SASGMMGRTP----------GKPIREALVDPGKRFKHDVFTS 568

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA------TKGVV---IFSTAKDERVVSV 894
           + P     +I  V+  G ++R+ V +I +             V    +   AK E++V++
Sbjct: 569 IVPTTARGEIGAVTSAGRMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVAL 628


>gi|323127402|gb|ADX24699.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 819

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/892 (31%), Positives = 453/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    +  T++G  +R +  +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D++D ++++     E+ +LL T  G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDV-PIQGLKSSGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+++S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNEDKLVSTFSVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKAKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|24379629|ref|NP_721584.1| DNA topoisomerase IV subunit A [Streptococcus mutans UA159]
 gi|24377581|gb|AAN58890.1|AE014957_3 topoisomerase IV, subunit A [Streptococcus mutans UA159]
          Length = 818

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/815 (33%), Positives = 422/815 (51%), Gaps = 44/815 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQIMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIV TEIPY+VNKAA+++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 TEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    ILN L++YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+
Sbjct: 302 LKKDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 408 ------------SYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + +       +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFGNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D V  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASTVEELGK-----RDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  NI +    E I  +      E          AT+ G ++R +  D      
Sbjct: 571 KEIGEHLSQNITNFATDEEILYVDLVDHFEEG----TYYAATRLGQIKRFERRDLTPWRS 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A      D+++ +     ++ ++L T  G  +RF I  +    G  + G++ 
Sbjct: 627 YKSKAAKYAKLKGDDDQVIRISPIKLDD-VMLITARGYALRFNIEEV-PIVGPKAAGIKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L +GD + +  I          +   +K M+     ++   +    +  +   + +  
Sbjct: 685 INLKEGDSLATAFIANTDSIYILTQRGSLKRMTTNLIPVTSRAKRGLQVLRELKSKPHRV 744

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                        I   +  G   +    + +  +
Sbjct: 745 FAAGPVFSEAAGEIDLFTTVGEQGQEEILEIQSQS 779



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 77/528 (14%), Positives = 183/528 (34%), Gaps = 36/528 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  V   +   V     V +I     N +      ++   +  
Sbjct: 235 RVVVRSRTEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDRE 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D+      +     +++Q      +         +  I      L   I 
Sbjct: 295 GLRIAIELKKDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIP---MLTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+ +RS+      ++ L + +     R   I++ ++ +    +     +E++ ++ 
Sbjct: 352 HRKDIIVARSKFDKEKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKISY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR         + +V  + +       ++T  ++        +Y 
Sbjct: 410 DFSEEQAEAIVTLQLYRLTN------TDIVTLENEEAELRERITTLNAI--IGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +  G   ++ L        T  +              V  T+ G ++R 
Sbjct: 462 VMKRELREVKKK-FGNPRLSELQAE-----TQTIEIDTASLIVEEETYVSVTRGGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   N S    +     D+++ ++      ++L+ T LG  +  PI  +       
Sbjct: 516 S---PRSFNASTVEELGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADI-RWK 571

Query: 721 SVG---VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +G    + I + A  ++++ + +V H +         +  +    R          S  
Sbjct: 572 EIGEHLSQNITNFATDEEILYVDLVDHFEEGTYYAATRLGQIKRFERRDLTPWRSYKSKA 631

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              +      ++  +   +K   ++ ++ +G+  R +  +  I      GI+A ++ +  
Sbjct: 632 AKYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEVPIVGPKAAGIKAINLKE-- 689

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             G  +A   + + D I +++ +G+L R+  N I + SRA +G+ +  
Sbjct: 690 --GDSLATAFIANTDSIYILTQRGSLKRMTTNLIPVTSRAKRGLQVLR 735



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 21/219 (9%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E   +  T+ G   R            N+  V  +     D VI +    
Sbjct: 490 EIDTASLIVEEETYVSVTRGGYIKRTS------PRSFNASTVEELGKRDDDDVIFIQNAK 543

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++     +   R  +       + +    ++ IT+   D  +      +  +E  
Sbjct: 544 TTQELLIFTNLGNVIYRPIHELADIRWKEIGEHLSQNITNFATDEEILYVDLVDHFEE-- 601

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                    +  G  KR    D     RS K   A       +   ++ + P+  +D ++
Sbjct: 602 ---GTYYAATRLGQIKRFERRDLTPW-RSYKSKAAKYAKLKGDDDQVIRISPIKLDD-VM 656

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           L++ +G  +R  + E+ I      G+   +  + + + +
Sbjct: 657 LITARGYALRFNIEEVPIVGPKAAGIKAINLKEGDSLAT 695


>gi|251782579|ref|YP_002996882.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391209|dbj|BAH81668.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 819

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/892 (31%), Positives = 453/892 (50%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKARLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    +  T++G  +R +  +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D++D ++++     E+ +LL T  G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDV-PIQGLKSSGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+++S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNEDKLVSAFSVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKAKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|87160035|ref|YP_493948.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|294848359|ref|ZP_06789106.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|87126009|gb|ABD20523.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|294825159|gb|EFG41581.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
          Length = 800

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|221141852|ref|ZP_03566345.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751186|gb|ADL65363.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 800

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A    H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKKNDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKKNDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V K +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKKND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           11379]
 gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
          Length = 818

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 291/817 (35%), Positives = 423/817 (51%), Gaps = 64/817 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +MG+
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + +DTVDF+ NYDG  +EP VL A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G TGIK+AY  G
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLTGIKDAYTAG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGSFKIRATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 RAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM     
Sbjct: 368 HRFEVVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMAH--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+QT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDKLNGE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I     IL S + L  ++  EL +V  +  T RRT ++E            +  +   V 
Sbjct: 462 IDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQIASVPLEVADDPCRVL 521

Query: 542 VSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +S  G + R     P+ +    RR             D +      +    V   +S G 
Sbjct: 522 LSSTGLLARTANAEPVEISEDARR----------TKHDVIVSAVAATARGDVGAVTSTGR 571

Query: 598 VYKEKVWRLPI-----GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP        P   G A +   L+L   E +  +    ED     +  +   
Sbjct: 572 LLRLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEADEELICLTTLAED-----SPGLAIG 626

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R         N+     + L   D I+   E  T E D++  T   Q +R+P 
Sbjct: 627 TLQGVVKRVVPD--YPANKDELEVITLKDGDRIVGATELRTGEEDLVFITSDAQLLRYPA 684

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++R   GR + G+ G+ LA G +V+S   V  A AD         H +    +++    
Sbjct: 685 GSVRP-QGRPAGGMAGVKLAAGAEVLSFTAVDPA-ADAVVFTVAGSHGTLDDSVLTSKLT 742

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                       G +  +R     LK + +L  +  G
Sbjct: 743 PFDQYPRKGRATGGVRCQRF----LKGEDVLVFAWAG 775



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 89/273 (32%), Gaps = 34/273 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ ++I+   +        D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANAEPVEISEDARRTKH----DVIVSAVAATARGDVGAVTSTG 570

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS----LAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +      ++     G   IS    L   +++I +  +              
Sbjct: 571 RLLRLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEADEELICLTTLAEDSPGLAIGTLQG 630

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E IT    D  V          EL+  E+ ++ ++      R  
Sbjct: 631 VVKRVVPDYPANKDELEVITLKDGDRIVGAT-------ELRTGEEDLVFITSDAQLLRYP 683

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLI 863
           +   R   R   G+    ++   E   +++   V+     ++ +  G          T  
Sbjct: 684 AGSVRPQGRPAGGMAGVKLAAGAE---VLSFTAVDPAADAVVFTVAGSHGTLDDSVLTSK 740

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             P ++     RAT GV      K E V+    
Sbjct: 741 LTPFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 773



 Score = 44.5 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +  +I SV     ++    L +  G   R   +     +             K D ++S
Sbjct: 501 SAGSQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISE-------DARRTKHDVIVS 553

Query: 738 -MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--- 793
            +A     D         +  +S        DT    +L   + +   ++ E  +EL   
Sbjct: 554 AVAATARGDVGAVTSTGRLLRLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEADEELICL 613

Query: 794 ---KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +   + +G  KR    D+     +   +    +   + I     +      
Sbjct: 614 TTLAEDSPGLAIGTLQGVVKRV-VPDYPA---NKDELEVITLKDGDRIVGATELRT--GE 667

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + ++ ++    L+R P   +R   R   G+     A    V+S   + 
Sbjct: 668 EDLVFITSDAQLLRYPAGSVRPQGRPAGGMAGVKLAAGAEVLSFTAVD 715


>gi|257430712|ref|ZP_05607094.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278840|gb|EEV09459.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 800

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFILNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|241896017|ref|ZP_04783313.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241870748|gb|EER74499.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 819

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 282/908 (31%), Positives = 451/908 (49%), Gaps = 108/908 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K++
Sbjct: 3   ETGNIQELSLEAVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNKDGNTFDKQF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+AL RM+QDW LR  LIE  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRAPLIEMHGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L DL K+TVD   N+D +  EP VL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSKLAGEMLRDLDKETVDMVLNFDDTEYEPTVLPAHFPNLLVNGATGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D  + ++ +P+  L+ LM  ++GPDFPTG +I G  GIK+AY  GRG IV+R
Sbjct: 183 PHNLGEVIDALIYLLAHPNASLEDLMGFVQGPDFPTGGIIQGVDGIKSAYKNGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I    G + QI ++EIPY+VNKA +++KI E+   K +  I ++RDESDR G  + 
Sbjct: 243 SKTEIIALKGGKSQIQISEIPYEVNKATLVKKIDEIRLNKDVSGIVEVRDESDRDGLSIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+   IL  L + T LQ  ++ NMVA++  +PER  L   L+AF+  + E++ +
Sbjct: 303 IELSKDANVQGILAYLLKKTDLQVTYNFNMVAIHNLRPERVGLKTALQAFLDHQVEIITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++R H++ GL  A++ LDEV+  IR S + + A++ L+ +           
Sbjct: 363 RTEYDLRKAKERQHIVTGLIKALSILDEVIATIRSSEDRKNAKQNLVDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +  Q  AI+ L+L RLT      ++ E   L   I     IL
Sbjct: 412 ---------------YEFTLEQAEAIVTLQLYRLTNTDVTQLQAEFEELSDRIMHFNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
           S    L   ++QE  S+K E ++PR T I   + ++  +    +  ED+ V VS +GYVK
Sbjct: 457 SEPKVLRQELRQEFKSIKKEYNSPRLTTIEADVQELKYDSTVTVADEDVAVLVSKMGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  ++A            +RD+D    +  V+T   +  F++ G V    +  LP  
Sbjct: 517 RSSLRSFKAS------GDENGLRDDDEPLFIERVNTLQHMFIFTNKGHVIYRPIHELPEF 570

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   +S     E I  +    +  S       + AT  G +++    D    
Sbjct: 571 KWKEPGEHLSQSVSGFISDEEIIHVEIVNDINSLEGTW--LSATNDGYIKQFNFEDLTPR 628

Query: 669 N---RSGKIAMKLDSRD-EILSVET----CTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +   +   + MKL + D  I+ +E        +  ++LTTK    +R+ ++ + +   R 
Sbjct: 629 STYKKRSTVYMKLKADDSSIIGLEYLSIGAASDRTVILTTKHAVGLRYDVTEVPLSGNRT 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++LA  D +++M+      A                                  
Sbjct: 689 A-GVKAMNLADSDNIVNMSTATEKQA---------------------------------- 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +  ++ +G  K     +  I++R+ KG+      K +    
Sbjct: 714 -------------------LAIITHRGAFKWMPVSEIPITSRARKGVAIMRELKKDSHEI 754

Query: 841 LVAVFPVNDNDQ-----IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +  +      DQ     + + + +G    V   +  ++ R + G  I  T  D +  +++
Sbjct: 755 IATIVI----DQQAPAALSIYTSRGKRFDVSPKDHALSQRYSNGSFIIDTDTDGQPTTIK 810

Query: 896 RIRESEIV 903
              E+++ 
Sbjct: 811 LYDETKVE 818


>gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 818

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 295/821 (35%), Positives = 426/821 (51%), Gaps = 64/821 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +       ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M 
Sbjct: 5   STKTPPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 GD-PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            D PPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPVVL A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G  GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLGGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YTAGRGSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM 
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMA 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 H--------------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L  EI     IL S + L  ++  EL +V  +  T RRT ++E            +  + 
Sbjct: 459 LSGEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGAQIASVPLEVADDP 518

Query: 538 MVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             V +S  G + R     P+ +    RR             D +      +    V   +
Sbjct: 519 CRVLLSSTGLLARTANAEPVEISEDARR----------TKHDVIVSAVAATARGDVGAVT 568

Query: 594 SLGFVYKEKVWRLPI-----GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLY 647
           S G + +  V  LP        P   G A +   LSL   E +  +    E     ++  
Sbjct: 569 STGRMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEADEELVCLTTLDE-----SSPG 623

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCV 706
           +   T  G V+R         N+     + L   D I+   E  T E D++  T   Q +
Sbjct: 624 LAIGTLQGVVKRVVPD--YPPNKDELEVISLKDGDRIVGATELRTGEEDLVFITSDAQLL 681

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R+P +++R   GR + G+ G+ LA G +V+S   V  A     E I +    S      S
Sbjct: 682 RYPAASVRP-QGRPAGGMAGVKLAAGAEVLSFTAVDPAS----EAIVFTVAGSHGTLDDS 736

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             T ++T               RCQ   LK + +L  +  G
Sbjct: 737 VLTSKLTPFDQYPRKGRATGGVRCQRF-LKGEDVLVFAWAG 776



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 94/272 (34%), Gaps = 32/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ ++I+   +        D I+S    T   D+   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANAEPVEISEDARRTKH----DVIVSAVAATARGDVGAVTSTG 571

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS----LAKGDQVISMAIVLHADADYD-ERICY 754
           + +R  +  +      ++     G   IS    L   ++++ +  +  +        +  
Sbjct: 572 RMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEADEELVCLTTLDESSPGLAIGTLQG 631

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +          + D  E+ SLK+   + G        EL+  E+ ++ ++      R  +
Sbjct: 632 VVKRVVPDYPPNKDELEVISLKDGDRIVG------ATELRTGEEDLVFITSDAQLLRYPA 685

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLIR 864
              R   R   G+    ++   E   +++   V+   + I+ +  G          T   
Sbjct: 686 ASVRPQGRPAGGMAGVKLAAGAE---VLSFTAVDPASEAIVFTVAGSHGTLDDSVLTSKL 742

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E V+    
Sbjct: 743 TPFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 774



 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 21/228 (9%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +  +I SV     ++    L +  G   R   +     +             K D ++S
Sbjct: 502 SAGAQIASVPLEVADDPCRVLLSSTGLLARTANAEPVEISE-------DARRTKHDVIVS 554

Query: 738 -MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--- 793
            +A     D         M  +S        DT    +L   + +   +S E  +EL   
Sbjct: 555 AVAATARGDVGAVTSTGRMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEADEELVCL 614

Query: 794 ---KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +   + +G  KR    D+     +   +    +   + I     +      
Sbjct: 615 TTLDESSPGLAIGTLQGVVKRV-VPDYPP---NKDELEVISLKDGDRIVGATELRT--GE 668

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + ++ ++    L+R P   +R   R   G+     A    V+S   + 
Sbjct: 669 EDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVD 716


>gi|297207991|ref|ZP_06924422.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887234|gb|EFH26136.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 800

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 455/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEIILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEIILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|312871702|ref|ZP_07731790.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092644|gb|EFQ51000.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 831

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 444/855 (51%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLIFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D    
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTISD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDL-----I 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 818

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 287/813 (35%), Positives = 421/813 (51%), Gaps = 56/813 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +MG+
Sbjct: 8   TPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
             ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+  D P
Sbjct: 68  RPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTECR+  A   + + + +DTVD++ NYDG  +EPVVL A YPN+LVNG  GIAV
Sbjct: 128 PAAMRYTECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNLGEV+     +I +P+ DLDALM  + GPD PTG  I+G  GIK+AYA+G
Sbjct: 188 GMATNMPPHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGGRIVGLGGIKDAYASG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR    IE  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDLTD 307

Query: 305 RQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++ 
Sbjct: 308 REHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  LM+R   
Sbjct: 368 HRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+QT+ IL+  L RLT   R ++ +E + L  E
Sbjct: 425 -----------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDRLNDE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541
           I     IL S + L  ++  EL +V  +  T RRT ++E            +  +   V 
Sbjct: 462 IAALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQVASVPLEVADDPCRVL 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R   +         K          D +      +    V   +S G + + 
Sbjct: 522 LSSTGLLARTANADPIVVAEDTK------RTKHDVIVSAVPATARGDVGAVTSTGRLLRL 575

Query: 602 KVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP           + G  +   L+L  GE +  +    E+     +  +   T  G
Sbjct: 576 SVIDLPQLPDTHTAPTLSGGAQISEFLTLETGEELICLSTLEEE-----SPGLAIGTLQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R         N+     + L   D I+   +  T E D++  T   Q +R+P + +R
Sbjct: 631 VVKRVVPD--YPPNKDEWEIISLKDGDRIVGATQLLTGEEDLVFITSDAQLLRYPAAQVR 688

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + G+ GI L     V+S   V  A AD         H +      +        
Sbjct: 689 P-QGRAAGGMTGIKLGADAAVLSFTAVDPA-ADAVVFTVAGSHGTLDDSERTWKLTPFDQ 746

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                   G +  +R     LK + +L  +  G
Sbjct: 747 YPRKGRATGGVRCQRF----LKGEDVLVFAWAG 775



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 141/437 (32%), Gaps = 57/437 (13%)

Query: 495 SRLLGIIKQELLSVKDELDTPRRTR----------IVEGLLDMEDEDCIVREDMVVTVSH 544
             LL +       V       RRT+          ++  LLD+++   ++R+      + 
Sbjct: 359 KELLEVYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAK 418

Query: 545 LGYVKRVPLSVYRAQ-------RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
              ++R  LS  + Q       RR  +     +  + D + D     T        S   
Sbjct: 419 ERLMERFSLSEIQTQYILDTPLRRLTRFDRIELESERDRLNDEIAALT----AILESDAE 474

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           + K     L     +  G     +L  + G ++ ++ P        ++   V  +  G +
Sbjct: 475 LRKLVSSELA-AVAKKFGTDRRTVLLESAGSQVASV-PL----EVADDPCRVLLSSTGLL 528

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            R   +D I +    K        D I+S    T   D+   T  G+ +R  +  +    
Sbjct: 529 ARTANADPIVVAEDTKRTKH----DVIVSAVPATARGDVGAVTSTGRLLRLSVIDLPQLP 584

Query: 718 GRNSV----GVRGIS----LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             ++     G   IS    L  G+++I ++ +          +         +R++    
Sbjct: 585 DTHTAPTLSGGAQISEFLTLETGEELICLSTLEEESPG----LAIGTLQGVVKRVVPDYP 640

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                 +  S  +G+      Q L  +E  +  ++      R  +   R   R+  G+  
Sbjct: 641 PNKDEWEIISLKDGDRIVGATQLLTGEEDLVF-ITSDAQLLRYPAAQVRPQGRAAGGMTG 699

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL-------IRVPVNEIRIASRATKG 879
             +       A+++   V+     ++ +     GTL          P ++     RAT G
Sbjct: 700 IKLGAD---AAVLSFTAVDPAADAVVFTVAGSHGTLDDSERTWKLTPFDQYPRKGRATGG 756

Query: 880 VVIFSTAKDERVVSVER 896
           V      K E V+    
Sbjct: 757 VRCQRFLKGEDVLVFAW 773



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 21/228 (9%)

Query: 679 DSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +  ++ SV     ++    L +  G   R   +   V A             K D ++S
Sbjct: 501 SAGSQVASVPLEVADDPCRVLLSSTGLLARTANADPIVVAEDTKR-------TKHDVIVS 553

Query: 738 MA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--- 793
                   D         +  +S        DT    +L   + +   ++ E  +EL   
Sbjct: 554 AVPATARGDVGAVTSTGRLLRLSVIDLPQLPDTHTAPTLSGGAQISEFLTLETGEELICL 613

Query: 794 ---KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
              + +   +   + +G  KR    D+  +    K      +S  +    + A   +   
Sbjct: 614 STLEEESPGLAIGTLQGVVKRV-VPDYPPN----KDEWEI-ISLKDGDRIVGATQLLTGE 667

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + ++ ++    L+R P  ++R   RA  G+       D  V+S   + 
Sbjct: 668 EDLVFITSDAQLLRYPAAQVRPQGRAAGGMTGIKLGADAAVLSFTAVD 715


>gi|312864636|ref|ZP_07724867.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
 gi|311099763|gb|EFQ57976.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
          Length = 828

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/888 (32%), Positives = 445/888 (50%), Gaps = 86/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 11  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 70

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 71  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 130

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 131 RLSEIAGYLLQDIDKDTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPD PTGA+I G   I+ AY TG+G IV+R  
Sbjct: 191 NLAEVIDAVIYMIDHPKAKVDKLMEFLPGPDLPTGAIIQGADEIRKAYETGKGRIVVRSR 250

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +EQIVVTEIPY VNKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 251 TEIEPLKAGKEQIVVTEIPYDVNKAVLVKKIDDVRINNKVPGIAEVRDESDREGLRIAIE 310

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  ++ IL +++A R +++V R+
Sbjct: 311 LKKDADSQAILNYLLKYTDLQINYNFNMVAIDNFTPRQVGIVPILTSYIAHRRDIIVARS 370

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 371 KFDKKKAEKRLHIVEGLIRVLSILDEVIALIRDSENKADAKENL---------------- 414

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  +L  EI     I+  
Sbjct: 415 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEDAALREEIATLKAIIGD 464

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PRR+ +      +E +     V ED  V+++  GY+KR 
Sbjct: 465 ERTMFNLMKRELREVKKKFGNPRRSELQAQAQAIEIDTASLIVEEDTYVSLTRSGYLKRT 524

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A      G+     RD+D    +    T   +L F++LG V    V  L     
Sbjct: 525 SPRSYNASTPEELGK-----RDDDKAVLIAPAKTTQHLLIFTNLGNVIYRPVHELTDIRW 579

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   L +    E +     + E    +        TK G ++R   ++F     
Sbjct: 580 KDIGEHLSQTLTNFATDEEVL----YAEIIDDFTPETYFAVTKMGQIKRVDRTEFQPWRS 635

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A      D+++++    + + +++ T+ G  + FPI  + V     + GV+ 
Sbjct: 636 YKTKSSKYAKLKGDEDQVVAMAPI-KLDAVMVITEKGYALHFPIEEVPVVGS-KAAGVKA 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD V +  I         +    +    + +R+   D           +      
Sbjct: 694 INLKDGDSVKAAFIANT------KSFFILTQRGSLKRMALDDIP--------LAKRAGRG 739

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +                               +S  N     +    
Sbjct: 740 LQVLRELKSKPHRVFLAG-------------------------PVLSDANTQDLDLFSTE 774

Query: 847 VND--NDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +  + QI+ ++S  G L +V + ++ ++ R + G  I  +  DE V
Sbjct: 775 VEESKDQQILEVMSKTGKLEQVNLVDLGLSERTSNGSFISDSISDEEV 822


>gi|156888557|gb|ABU96683.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 450/887 (50%), Gaps = 84/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    +  T++G  +R +  +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D++D ++++     E+ +LL T  G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDV-PIQGLKSSGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+++S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNEDKLVSTFSVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKAKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEV 813



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/537 (15%), Positives = 167/537 (31%), Gaps = 85/537 (15%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D+      +  +  +++Q      +         +  ++     L   I 
Sbjct: 295 GLRIAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQ---KILSSYIS 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+  RS+      ++ L + +     R   I++ ++ +    D     +E++ V+ 
Sbjct: 352 HRKDIIIERSKFDKAKAEKRLHIVE--GLIRVLSILDEIIALIRASDNKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR                 D +T L                 +Y 
Sbjct: 410 DFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTL--------SAIIGDEATMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +       N   L++ +  + I+              V  T+ G ++R 
Sbjct: 462 VMKRELREVKKK-----FAN-PRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   N S    +     DE++ V+       +LL T LG  +  PI  +       
Sbjct: 516 S---PRSFNASSLEEVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDL-RWK 571

Query: 721 SVG---VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +G    + I + A  ++++   IV   D                               
Sbjct: 572 DIGEHLSQTISNFATEEEILYADIVTSFD------------------------------- 600

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               +   L V++ GF KR    +     R+ K      V   +
Sbjct: 601 --------------------QGLYLAVTQNGFTKRFERQELTPW-RTYKSKSTKYVKLKD 639

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +V + P+   D ++LV+  G  +R    ++ I    + GV   +   ++++VS
Sbjct: 640 AKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKLVS 695


>gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 828

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 282/879 (32%), Positives = 437/879 (49%), Gaps = 72/879 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        E+  + I  + +++EM+ S+L YA +VI  RA+PD RDG+KPV RRIL+ M
Sbjct: 1   MARTTSRPPEDLAEKIIDIDVSEEMRGSFLEYAYSVIYQRALPDARDGMKPVQRRILYQM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VKCAR+ G+VMG+ HPHG+ AIYDAL R++Q +++R+ L++G GNFGS+
Sbjct: 61  NEMGLRHDRGHVKCARVVGDVMGRLHPHGDTAIYDALVRLSQPFAMRVPLVDGHGNFGSL 120

Query: 121 DGDPPAA-ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            GD   A  RYTE RL +AA  L+  + ++ VDFRPNYDG   EP VL A +PN+LVNG 
Sbjct: 121 GGDDAPAAMRYTEARLDRAAEQLVASIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNLGEVV     +I +P+  L+ L E + GPD PTG  I+G  GI++
Sbjct: 181 SGIAVGMATNMAPHNLGEVVAAARHLIAHPEATLEELTEFVPGPDLPTGGTIVGLDGIRD 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRG+   R    IEK S  R  +VVTE+PY V    ++ +I ELV+ K++  I+DL
Sbjct: 241 AYRSGRGTFKTRATVSIEKVSARRTGLVVTELPYSVGPEKVISRIKELVQSKKLQGISDL 300

Query: 300 RDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D +DR    R+VIELK G + + +L +LYR T ++  F +N VAL   +P+   L  +L
Sbjct: 301 KDLTDRTQGLRLVIELKNGFNPEAVLEELYRLTPMEESFGINNVALVDGQPQTLGLRELL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R +VV RR+++   K ++R H++ GL +A+ ++D V+ +IR + +   AR  LM
Sbjct: 361 EVYVNHRLDVVRRRSEFRRAKRQERLHLVDGLLVALLDIDRVISLIREAEDTAAARESLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                     G   LSE+Q R ILE  L RLT   R ++  E +
Sbjct: 421 --------------------------GAYDLSEIQARYILETPLRRLTRFDRMELETERD 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVR 535
            L  E+     +L S  +L  ++ +E+  V  E  TPRRT++ E             +  
Sbjct: 455 KLNKEVDALTAVLESDKKLRRLVSKEMGDVAKEFATPRRTQLRESDGVARSAVIPLEMAD 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +   V +   G + R           G + R        D V      ++ ++V   + L
Sbjct: 515 QPCHVLMGVHGAIGRSKGPSVPRVYEGLRTR-------HDAVHVSVPTTSRSAVGLVTDL 567

Query: 596 GFVYKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           G + +  V  LP          P A G  +   + L+  ER+ +++         +    
Sbjct: 568 GRMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVVSM-----DASGPGF 622

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVR 707
              T+ G V+R   S     N+     + L   D ++ V +  T E D+   T   Q +R
Sbjct: 623 ALGTRGGVVKRV--SPDYPPNKDDFEVVALKDDDRVVGVTQLSTGEEDLAFITSEAQLLR 680

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  SA+R   GR + GV G+ L++G +V+    V          +          +  S 
Sbjct: 681 FSASAVRP-QGRPAGGVAGVRLSEGARVLWFGAVPSPQDSVVVTVSGSSGALEGTQAGSA 739

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                 +        G +   R   LK ++  +      G+  R+ +   R     GK +
Sbjct: 740 KVTPFEAYPVKGRATGGVRCHRY--LKGEDTLLF-----GWIGRSPARAARA---DGKPV 789

Query: 828 RATD-VSKINEIGALV--AVFPVNDNDQIILVSDKGTLI 863
           R  D + + +  G  +  A+  V         +D G  +
Sbjct: 790 RLPDPIDRRDGSGDALPRAIVTVGSGQ-----TDSGITV 823



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             D  E   L  D  V   +S      +          +  G  KR S  D+        
Sbjct: 594 GLDVSEFVQLDGDERVVSVVS------MDASGPGFALGTRGGVVKRVSP-DYPP------ 640

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                +V  + +   +V V  ++  ++ +  ++ +  L+R   + +R   R   GV    
Sbjct: 641 NKDDFEVVALKDDDRVVGVTQLSTGEEDLAFITSEAQLLRFSASAVRPQGRPAGGVAGVR 700

Query: 885 TAKDERV 891
            ++  RV
Sbjct: 701 LSEGARV 707



 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 82/244 (33%), Gaps = 29/244 (11%)

Query: 669 NRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN--- 720
              G    ++        D +      T  + + L T LG+ +R P+  +          
Sbjct: 529 RSKGPSVPRVYEGLRTRHDAVHVSVPTTSRSAVGLVTDLGRMIRVPVVELPELPDEGGDS 588

Query: 721 ---SVGVRG---ISLAKGDQVISMAIVLHADADYD-ERICYMKHMSAQRRLISGDTEEIT 773
              + G+     + L   ++V+S+  +  +   +       +    +     + D  E+ 
Sbjct: 589 PPLASGLDVSEFVQLDGDERVVSVVSMDASGPGFALGTRGGVVKRVSPDYPPNKDDFEVV 648

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           +LK+D  V G        +L   E+ +  ++ +    R S+   R   R   G+    +S
Sbjct: 649 ALKDDDRVVGVT------QLSTGEEDLAFITSEAQLLRFSASAVRPQGRPAGGVAGVRLS 702

Query: 834 KINEIGALVAVFPVNDNDQIILV--------SDKGTLIRVPVNEIRIASRATKGVVIFST 885
           +   +    AV    D+  + +         +  G+    P     +  RAT GV     
Sbjct: 703 EGARVLWFGAVPSPQDSVVVTVSGSSGALEGTQAGSAKVTPFEAYPVKGRATGGVRCHRY 762

Query: 886 AKDE 889
            K E
Sbjct: 763 LKGE 766


>gi|325694457|gb|EGD36366.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK150]
          Length = 816

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 289/887 (32%), Positives = 464/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D ++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDRVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +  V+   +G+      F                             
Sbjct: 731 LQVLRELKAKPHRVF-VAGPVYGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 85/560 (15%), Positives = 188/560 (33%), Gaps = 41/560 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 516 S---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 573 IGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 632

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  + + L       ++ V++ G+  R +  +  +      G++A ++ K + 
Sbjct: 633 KFAKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 691

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVER 896
              ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V V  
Sbjct: 692 ---VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFVAG 748

Query: 897 IRESEIVD------EAESTE 910
               E VD      EAE++E
Sbjct: 749 PVYGEAVDFDLFTTEAEASE 768


>gi|257425421|ref|ZP_05601846.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428081|ref|ZP_05604479.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257433472|ref|ZP_05609830.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436313|ref|ZP_05612360.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903935|ref|ZP_06311823.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905700|ref|ZP_06313555.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908668|ref|ZP_06316489.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910937|ref|ZP_06318740.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914144|ref|ZP_06321931.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924249|ref|ZP_06331923.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958119|ref|ZP_06375570.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293526724|ref|ZP_06671409.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591170|ref|ZP_06949808.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271878|gb|EEV04016.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274922|gb|EEV06409.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257281565|gb|EEV11702.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284595|gb|EEV14715.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313636|gb|EFB44029.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322212|gb|EFB52536.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325542|gb|EFB55851.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327486|gb|EFB57778.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330992|gb|EFB60506.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595553|gb|EFC00517.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790268|gb|EFC29085.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920796|gb|EFD97859.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297576056|gb|EFH94772.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194272|gb|EFU24665.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 800

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|256847178|ref|ZP_05552624.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715842|gb|EEU30817.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 843

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 264/788 (33%), Positives = 430/788 (54%), Gaps = 49/788 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M   +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+ VNG  GI+ G AT IP 
Sbjct: 123 ARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E++   + ++ +P+  LD LM  + GPDFPTG +I G  GI+ AY TGRG +++R 
Sbjct: 183 HNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGIIQGVDGIRKAYETGRGRVILRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+  G R+QI+VTEIPY VNKA ++++I +L   K++  I++ RDE+DR G R+ I
Sbjct: 243 NTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+ ILN L + T LQ  ++ NMVA++  +P R  L   LK+++AF++E++ RR
Sbjct: 303 ELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRVGLKHYLKSYLAFQQEIITRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+KA+ R H++ GL  A++ LD+V++ IR S N + A + L+              
Sbjct: 363 TQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNE------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            ++ Q  AI+ L+L RLT     D+R+E   L   I E   IL+
Sbjct: 411 --------------YQFTQPQAEAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            ++ L  ++ +E  ++  +  + R+T+I + +    ++ +  +  E++VV VSH GY+KR
Sbjct: 457 DQNELNRVLVKEFKAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  ++A      G     +R++D+   +   ST   +  F++ G V    V  L    
Sbjct: 517 TSLRSFKASVLEENG-----LREDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAK 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--- 667
            +  G+ +   + L   E I   + F   E       ++F+T  G V++  + D      
Sbjct: 572 WKETGEHISQSIGLADDEEIIKALIFENLEL---PGTMIFSTSDGQVKQTTIQDLKPGSR 628

Query: 668 -INRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
             +R+  +    D+   +++ E    +     +   +K G  +RF ++ +     R + G
Sbjct: 629 YKSRASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHGYGLRFDVAEVPTQGTRTA-G 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR I+L   D+++++      D     R+  M    A + + + + E  +  +    V  
Sbjct: 688 VRAINLKDDDELVNLVQTADDD-----RLAIMTQRGAFKEMRANELEVGSRARRGVLVLH 742

Query: 784 NISEERCQ 791
            + +   +
Sbjct: 743 KLKKHPHE 750



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 102/266 (38%), Gaps = 19/266 (7%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E+    +      +  +   VV  +  G ++R  L        S      L   D  L +
Sbjct: 485 EKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSL---RSFKASVLEENGLREDDYPLLI 541

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           +  +  N + + T  G  +  P+  +   A     G    + I LA  +++I   I  + 
Sbjct: 542 QRASTLNHLFMFTNQGHVIYRPVHEL-TDAKWKETGEHISQSIGLADDEEIIKALIFENL 600

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE-------RCQELKLKE 797
           +      + +       ++    D +  +  K+ +SV   + +           E + + 
Sbjct: 601 E--LPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQN 658

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +  +S+ G+G R    +         G+RA ++   +E+  LV      D+D++ +++
Sbjct: 659 VSLTAISKHGYGLRFDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTA---DDDRLAIMT 715

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIF 883
            +G    +  NE+ + SRA +GV++ 
Sbjct: 716 QRGAFKEMRANELEVGSRARRGVLVL 741



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GY  R  ++    Q     G   + ++D+D + +L   +    +   +  G   + 
Sbjct: 664 ISKHGYGLRFDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTADDDRLAIMTQRGAFKEM 723

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +   L +GS   RG  +++ L  +  E I   + +P D
Sbjct: 724 RANELEVGSRARRGVLVLHKLKKHPHE-IVDFLAYPAD 760


>gi|224543252|ref|ZP_03683791.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523785|gb|EEF92890.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 849

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/739 (35%), Positives = 398/739 (53%), Gaps = 41/739 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK I  +S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   NK Y 
Sbjct: 3   EKNII-MSLEDIMGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMWKEGNLPNKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ R++QDW +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 62  KSAKTVGTVIGNYHPHGDSSVYEAMVRLSQDWKMRMPLVDMQGNNGSIDNDPAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  L+ D+ K+TV    N+D +  EP V  A+YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 ARLAPIALDLIKDIDKETVPMALNFDDTEYEPTVFPAKYPNLLVNGATGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  I +P    D L + I+GPDFPTGA++ G + I  A  TGRG +V+R 
Sbjct: 182 HNLEEVIDATIYRIKHPHCSFDELHQFIKGPDFPTGAIVEGASDIATALRTGRGKVVVRS 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              I     +  QI++TEIPY+VNKA ++ K+AE+   + I  I ++RDESDR G  + +
Sbjct: 242 RYKI-VEQKNINQILITEIPYEVNKAELVRKMAEIQFNRDIDGIIEVRDESDRNGLCIAV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+   A   LN  ++ T LQ  ++ NM A+   +P    +  IL  ++    EVV +R
Sbjct: 301 DLKKDVDARNTLNYFFKNTDLQKNYNYNMTAIKDKRPVLMGIEDILDGYIKHECEVVTKR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKA++R H++ GL  A++ LDEVV+ IR S +   A+  LM              
Sbjct: 361 SIFDLNKAQEREHIVEGLIKAISILDEVVKTIRASKDKADAKVNLMN------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      + NE   L   I+    IL+
Sbjct: 408 -------------AFGFTERQAEAIVTLQLYRLTNTDIVSLENEQKELQALIESLNAILT 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  EL  VK +  TPR T I + ++D  +  +  I+ ED+ V+++  GY K+
Sbjct: 455 SEKVLRKVIIDELKGVKKKYPTPRLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGYFKK 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    Y+A      G+     +D D + DLF  +T   +L F++ G      V++L    
Sbjct: 515 ISTRSYKASDENTFGK-----KDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFK 569

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
            +  GK L  ++ L   E+I   +     +S   + YVV ++K+G ++R  + DF     
Sbjct: 570 WKDLGKHLSYLIKLGNDEKIIGNILV---KSFDLDQYVVLSSKNGQIKRVSIKDFNVSRF 626

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                 M L   DE++SV+       I+  TK G    +    I +     + GV+GI++
Sbjct: 627 SKPLKCMNLKDNDELISVDISDGTKGIITVTKAGYGTLYSEDEISILGV-KAGGVKGINM 685

Query: 730 AKGDQVISMAIVLHADADY 748
              D+V  M++   + A  
Sbjct: 686 R-DDEVAFMSVFDPSIASS 703



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 90/242 (37%), Gaps = 14/242 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            V  T+ G  ++           S +        D ++ +      + IL  T  G    
Sbjct: 503 YVSITRDGYFKKIS---TRSYKASDENTFGKKDTDMLVDLFEANTLDVILSFTNKGNYCF 559

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +  F     +G      I L   +++I   +V   D D   +   +   + Q + 
Sbjct: 560 VPVYKLEDF-KWKDLGKHLSYLIKLGNDEKIIGNILVKSFDLD---QYVVLSSKNGQIKR 615

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF--ILTVSEKGFGKRTSSYDFRISNR 822
           +S     ++              +    + + +    I+TV++ G+G   S  +  I   
Sbjct: 616 VSIKDFNVSRFSKPLKCMNLKDNDELISVDISDGTKGIITVTKAGYGTLYSEDEISILGV 675

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G++  ++   ++  A ++VF  +    ++LV +     R+ +++I    RATKG ++
Sbjct: 676 KAGGVKGINM--RDDEVAFMSVFDPSIASSLLLVLNPAHFKRIHISDIPACHRATKGTLL 733

Query: 883 FS 884
           F 
Sbjct: 734 FK 735



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 18/248 (7%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-----ETCTQENDILLTTKLGQ 704
             T    +R+  + +   + +        + +DEI+            E+  +  T+ G 
Sbjct: 452 ILTSEKVLRKVIIDELKGVKKKYPTPRLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGY 511

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKG---DQVISMAIVLHADADYDERICYMKHMSAQ 761
             +    + +  +  N+ G +   +         + + +      +Y     Y       
Sbjct: 512 FKKISTRSYKA-SDENTFGKKDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFKW 570

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           + L       +  L ND  + GNI  +        +Q+++  S+ G  KR S  DF +S 
Sbjct: 571 KDL-GKHLSYLIKLGNDEKIIGNILVKSFDL----DQYVVLSSKNGQIKRVSIKDFNVS- 624

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  K ++  ++   +E   L++V   +    II V+  G       +EI I      GV 
Sbjct: 625 RFSKPLKCMNLKDNDE---LISVDISDGTKGIITVTKAGYGTLYSEDEISILGVKAGGVK 681

Query: 882 IFSTAKDE 889
             +   DE
Sbjct: 682 GINMRDDE 689



 Score = 41.4 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+++  ++   A    ++    +      +++ +      +   +D +  G    +   
Sbjct: 483 KDEIMDTSVNQQAMIISEDVYVSITRDGYFKKIST-----RSYKASDENTFGKKDTDMLV 537

Query: 792 ELKLKEQF--ILTVSEKG---FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +L        IL+ + KG   F       DF+  +          +    +I   + V  
Sbjct: 538 DLFEANTLDVILSFTNKGNYCFVPVYKLEDFKWKDLGKHLSYLIKLGNDEKIIGNILVKS 597

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + +  ++L S  G + RV + +  + SR +K +   +   ++ ++SV+
Sbjct: 598 FDLDQYVVLSSKNGQIKRVSIKDFNV-SRFSKPLKCMNLKDNDELISVD 645


>gi|156888547|gb|ABU96678.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888549|gb|ABU96679.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888551|gb|ABU96680.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 449/887 (50%), Gaps = 84/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    +  T++G  +R +  +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D++D ++++     E+ +LL T  G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDV-PIQGLKSSGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+++S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNEDKLVSAFSVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKAKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V
Sbjct: 767 EGETNQQMLEVISKTGQTYEITLETLSLSERTSNGSFISDTISDQEV 813



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 80/537 (14%), Positives = 167/537 (31%), Gaps = 85/537 (15%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  ++      +  +  +++Q      +         +  ++     L   I 
Sbjct: 295 GLRIAIELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQ---KILSSYIS 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+  RS+      ++ L + +     R   I++ ++ +    D     +E++ V+ 
Sbjct: 352 HRKDIIIERSKFDKAKAEKRLHIVE--GLIRVLSILDEIIALIRASDNKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR                 D +T L                 +Y 
Sbjct: 410 DFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTL--------SAIIGDEATMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +       N   L++ +  + I+              V  T+ G ++R 
Sbjct: 462 VMKRELREVKKK-----FAN-PRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   N S    +     DE++ V+       +LL T LG  +  PI  +       
Sbjct: 516 S---PRSFNASSLEEVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDL-RWK 571

Query: 721 SVG---VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +G    + I + A  ++++   IV   D                               
Sbjct: 572 DIGEHLSQTISNFATEEEILYADIVTSFD------------------------------- 600

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               +   L V++ GF KR    +     R+ K      V   +
Sbjct: 601 --------------------QGLYLAVTQNGFTKRFERQELTPW-RTYKSKSTKYVKLKD 639

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +V + P+   D ++LV+  G  +R    ++ I    + GV   +   ++++VS
Sbjct: 640 AKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKLVS 695


>gi|156888553|gb|ABU96681.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888555|gb|ABU96682.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 449/887 (50%), Gaps = 84/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    +  T++G  +R +  +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D++D ++++     E+ +LL T  G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDV-PIQGLKSSGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+++S   V             +    + +R+   D  + +       V     
Sbjct: 685 INLKNEDKLVSTFSVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV----- 733

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +ELK K   +      G    TS+  F                       L    P
Sbjct: 734 ---LRELKAKPHRVFLA--GGVQSDTSAEQF----------------------DLFTDIP 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V
Sbjct: 767 EEETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEV 813



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/537 (15%), Positives = 167/537 (31%), Gaps = 85/537 (15%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D+      +  +  +++Q      +         +  ++     L   I 
Sbjct: 295 GLRIAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQ---KILSSYIS 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+  RS+      ++ L + +     R   I++ ++ +    D     +E++ V+ 
Sbjct: 352 HRKDIIIERSKFDKAKAEKRLHIVE--GLIRVLSILDEIIALIRASDNKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR                 D +T L                 +Y 
Sbjct: 410 DFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTL--------SAIIGDEATMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +       N   L++ +  + I+              V  T+ G ++R 
Sbjct: 462 VMKRELREVKKK-----FAN-PRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   N S    +     DE++ V+       +LL T LG  +  PI  +       
Sbjct: 516 S---PRSFNASSLEEVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDL-RWK 571

Query: 721 SVG---VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +G    + I + A  ++++   IV   D                               
Sbjct: 572 DIGEHLSQTISNFATEEEILYADIVTSFD------------------------------- 600

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               +   L V++ GF KR    +     R+ K      V   +
Sbjct: 601 --------------------QGLYLAVTQNGFTKRFERQELTPW-RTYKSKSTKYVKLKD 639

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +V + P+   D ++LV+  G  +R    ++ I    + GV   +   ++++VS
Sbjct: 640 AKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDVPIQGLKSSGVKGINLKNEDKLVS 695


>gi|49483548|ref|YP_040772.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427869|ref|ZP_06820501.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81651177|sp|Q6GH50|PARC_STAAR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49241677|emb|CAG40365.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128227|gb|EFG57861.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 800

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|289706923|ref|ZP_06503260.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
 gi|289556358|gb|EFD49712.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
          Length = 868

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 286/845 (33%), Positives = 422/845 (49%), Gaps = 88/845 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ +
Sbjct: 22  EQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSRMGLRPDRGH 81

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK AR+ GEVMGK HPHG+AAIYDA+ R+AQ +SLRL +++G GNFGS+D D PAA RYT
Sbjct: 82  VKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+  AA  L  DL + TVDF PNYD   Q+P VL A YPN+LVNG  GIAVGMATN+ 
Sbjct: 141 EARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAYPNLLVNGTTGIAVGMATNMA 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV G   ++ +P  DL+A+M  I GPD P+G  I+G  G+++AYATGRG+  +R
Sbjct: 201 PHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGTFRMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
               +E+ +  R  +VVTE+PY V    ++E+I   V  K++  IAD+ D +DR  G R+
Sbjct: 261 AAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRL 320

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK G +   +L  LYR+T L+  F +N VAL   +P+   L+ +L+ +V  R +VV 
Sbjct: 321 QIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVR 380

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K RDR H++ GL +A+ ++DEV+ IIR S +   AR  LM            
Sbjct: 381 RRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM------------ 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   L++VQ   ILELRL +LT   R ++  E + L   I E   I
Sbjct: 429 --------------GVFDLTQVQADHILELRLRQLTKFSRIELEAERDELQAAIAELEAI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE------------DM 538
           L+S +RL  ++  EL +V DE    RRT ++E                          D+
Sbjct: 475 LASDARLREVVSSELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGAGQAGADL 534

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V  +    +      + R   R      G   +  D    +   +    +   +S G +
Sbjct: 535 MVPDTACWALLSTSGRLLRTADRTPIAPQGRRRK-HDAFASVVPTTARGEIGALTSAGAL 593

Query: 599 YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ +   LP+    +             ++ L +GE +  ++P         +  +   T
Sbjct: 594 HRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL--------DTVMALGT 645

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPIS 711
            HG V+R +      +NR    A+ L   D ++       E + ++  T+ GQ +R+  S
Sbjct: 646 AHGVVKRVRPEW--PLNRQVVDAVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAAS 703

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   G    GV GI LA GD V++  +   A               A    ++    +
Sbjct: 704 AVRP-QGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEAD 762

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +                               S  G  K T   ++    R   G+RA  
Sbjct: 763 VLG-----------------------------SAPGSVKVTPLGEYPAKGRGTGGVRAHR 793

Query: 832 VSKIN 836
           + K  
Sbjct: 794 LLKGE 798



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 31/226 (13%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                    L +  G+ +R          GR           K D   + A V+   A  
Sbjct: 535 MVPDTACWALLSTSGRLLRTADRTPIAPQGRR---------RKHD---AFASVVPTTARG 582

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV----- 803
           +  I  +    A  RL + D           ++   +       L   E  +  V     
Sbjct: 583 E--IGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPLDTV 640

Query: 804 ----SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSD 858
               +  G  KR    ++ + NR  + + A  +   +   A+V   P  D  DQ++ ++ 
Sbjct: 641 MALGTAHGVVKRVRP-EWPL-NR--QVVDAVALKDGD---AVVGAAPAPDEADQLVFLTR 693

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            G L+R   + +R    A  GV     A  + V++      + + +
Sbjct: 694 TGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTE 739



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 83/263 (31%), Gaps = 51/263 (19%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  ++   +  +           D   SV   T   +I   T  G   R     + V   
Sbjct: 557 RTPIAPQGRRRKH----------DAFASVVPTTARGEIGALTSAGALHRLQAVDLPVAGE 606

Query: 719 RNSVGVRGIS----------LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++     ++          LAKG+ ++++ + L            +K +  +  L    
Sbjct: 607 PSAA--PAMTAALPAAELVPLAKGETLVAL-VPLDTVMALGTAHGVVKRVRPEWPLNRQV 663

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            + +     D+ V    + +   +       ++ ++  G   R ++   R    +G G+ 
Sbjct: 664 VDAVALKDGDAVVGAAPAPDEADQ-------LVFLTRTGQLLRYAASAVRPQGPAGGGVA 716

Query: 829 ATDVSKIN--------------EIGALVA-------VFPVNDNDQIILVSDKGTLIRVPV 867
              ++  +              E GA  A       V  V D +  +L S  G++   P+
Sbjct: 717 GIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEADVLGSAPGSVKVTPL 776

Query: 868 NEIRIASRATKGVVIFSTAKDER 890
            E     R T GV      K E 
Sbjct: 777 GEYPAKGRGTGGVRAHRLLKGES 799


>gi|312438245|gb|ADQ77316.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 800

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTIYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|325912052|ref|ZP_08174450.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
 gi|325476002|gb|EGC79170.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
          Length = 831

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 444/855 (51%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLTFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D    
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTISD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDLT----- 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|283458283|ref|YP_003362902.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283134317|dbj|BAI65082.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 841

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 271/758 (35%), Positives = 408/758 (53%), Gaps = 69/758 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM+ S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ ++LRL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +P+  L  +M+ I GPD PTG  I+G  GI++AY TGRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGIRDAYETGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IE+ S  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR    R+VI
Sbjct: 257 VSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLTDRTNGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G + + +L  LY++T L+  F +N VAL   +P+   L+ +++ ++  R  VV RR
Sbjct: 317 EIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLDLMRVYIDHRLNVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K  DR H++ GL +A+ ++DEV++IIR S     AR +L               
Sbjct: 377 TEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL--------------- 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q   ILELRL +LT   R ++  E ++L  EI E   ILS
Sbjct: 422 -----------KVVFDLTDTQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILS 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI---------VEGLLDMEDEDC-------IVRE 536
           S + L  ++ +EL  V +   T RRT++         +E +               I  +
Sbjct: 471 SDAALRELVSEELAEVAERYGTDRRTQLKTKDDMQVAIEAVTAQSKAKKSLGLALEIADD 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P        R      G   +  D  T +   +    +   +S G
Sbjct: 531 PCWVLLSASGMMGRTPGKPI----REALVDPGKRFK-HDVFTSIVPTTARGEIGAVTSAG 585

Query: 597 FVYKEKVWRLPIGSPQARGKA-------LINILSLNQGERITTIMPFPEDESSWNNLYVV 649
            + +  V  + +      G            ++ L +GE++  ++P         N  + 
Sbjct: 586 RMVRLSVMDIAVLDENG-GTPSMASAVKAAELVQLAKGEKLVALVPL--------NTVLA 636

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI-LLTTKLGQCVRF 708
            AT  G ++R  L+    +N++    MKL   DEI++   C  ++ +    T+  + + F
Sbjct: 637 LATAGGVIKR--LNPDYPLNQTEWDIMKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTF 694

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + +R   GR   G+ GI LA GD++I++ +    DA
Sbjct: 695 DAAKVRP-QGRTGGGIAGIKLADGDRLIALGVTAPGDA 731



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 91/266 (34%), Gaps = 24/266 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R        I  +     K    D   S+   T   +I   T  G
Sbjct: 529 DDPCWVLLSASGMMGRTPGK---PIREALVDPGKRFKHDVFTSIVPTTARGEIGAVTSAG 585

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  I V          +  V+    + LAKG++++++ + L+           +
Sbjct: 586 RMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVAL-VPLNTVLALATAGGVI 644

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K ++    L   + + +    +D  V               +  +  V+         + 
Sbjct: 645 KRLNPDYPLNQTEWDIMKLKDDDEIVAA-------APCPTDDMVLTFVTRDAKLLTFDAA 697

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK----GTLIRVPVNEIR 871
             R   R+G GI    ++  + + AL  V    D  +++ V++      +     ++E  
Sbjct: 698 KVRPQGRTGGGIAGIKLADGDRLIAL-GVTAPGDAAEVVTVTNGKDGLASAKVTALSEYP 756

Query: 872 IASRATKGVVIFSTAKDERVVSVERI 897
              RAT GV        E  +++  +
Sbjct: 757 QKGRATGGVRAHRFLTGESQLALAWV 782



 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 22/225 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
                 +   +L +  G   R P         R ++   G         +  +IV     
Sbjct: 524 ALEIADDPCWVLLSASGMMGRTPG-----KPIREALVDPGKRFKHD---VFTSIVPTTAR 575

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                     R+  +  M       +G T  + S    + +      E+   L      +
Sbjct: 576 GEIGAVTSAGRMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVL 635

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LVSDK 859
              +  G  KR +  D+ +           D+ K+ +   +VA  P   +D ++  V+  
Sbjct: 636 ALATAGGVIKRLNP-DYPL------NQTEWDIMKLKDDDEIVAAAPCPTDDMVLTFVTRD 688

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             L+     ++R   R   G+     A  +R++++      +  +
Sbjct: 689 AKLLTFDAAKVRPQGRTGGGIAGIKLADGDRLIALGVTAPGDAAE 733



 Score = 44.5 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 29/180 (16%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ- 791
            ++  +  +L +DA   E +       A+R      T+  T      ++E   ++ + + 
Sbjct: 460 QEIAELQRILSSDAALRELVSEELAEVAERYGTDRRTQLKTKDDMQVAIEAVTAQSKAKK 519

Query: 792 ------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGALVA 843
                 E+     ++L  S  G   RT           GK IR    D  K  +     +
Sbjct: 520 SLGLALEIADDPCWVLL-SASGMMGRTP----------GKPIREALVDPGKRFKHDVFTS 568

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA------TKGVV---IFSTAKDERVVSV 894
           + P     +I  V+  G ++R+ V +I +             V    +   AK E++V++
Sbjct: 569 IVPTTARGEIGAVTSAGRMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVAL 628


>gi|223043266|ref|ZP_03613313.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
 gi|222443477|gb|EEE49575.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
          Length = 800

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 283/883 (32%), Positives = 464/883 (52%), Gaps = 92/883 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  + K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFEKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+  +IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHAELEALIKKLRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I   + +  ++ E  +  E+++++VSH GY+KR   
Sbjct: 459 ALLSVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ +++ E++  +     ++   ++ + V ATK+G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPIDEDEQVVDVY---NEKDFNSDAFYVMATKNGMIKKSSVSQFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + MK+   DEI++V     +  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LVGMKVKDHDEIVNVIRLESDQLITVLTHKGMSLTYSTSELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTESVSDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL ++++G  KR S    +++ R+ +GI      K N    +V    V +  +
Sbjct: 704 -------ILMITQRGAIKRISYKVLQVAKRAQRGITLLKELKKNPH-RIVDAAVVKEGQE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              V          +NE+ ++ + T G  I       +VVS+ 
Sbjct: 756 TYTVFSNNHEESGNINEVHLSEQYTNGSFIIDVDDFGQVVSMT 798



 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 113/278 (40%), Gaps = 15/278 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  + HG ++R         N SG   + L   D +L  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKY 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           +    ++ +L+ T  G+ +  P+  +        +G    + + + + +QV+   +    
Sbjct: 541 QEVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHVSQIVPIDEDEQVV--DVYNEK 597

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D + D            ++      +     K    ++    +E    ++L+   ++TV 
Sbjct: 598 DFNSDAFYVMATKNGMIKKSSVSQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQLITVL 657

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    V+D+D I++++ +G + 
Sbjct: 658 THKGMSLTYSTSELSDTGLRAAGVKSINLKDED---YVVMTESVSDSDSILMITQRGAIK 714

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRE 899
           R+    +++A RA +G+ +    K    R+V    ++E
Sbjct: 715 RISYKVLQVAKRAQRGITLLKELKKNPHRIVDAAVVKE 752



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  +  G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 496 VMVPSEEVILSVSHHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKYQEVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  + +   ++    + F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVDVYNEKDFNSDAFYVMAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S   F+ + R  K +    V   +E   +V V  +  +  I +++ KG  + 
Sbjct: 610 KNGMIKKSSVSQFKTT-RFNKPLVGMKVKDHDE---IVNVIRLESDQLITVLTHKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +E+        GV   +   ++ VV  E + +S+ +
Sbjct: 666 YSTSELSDTGLRAAGVKSINLKDEDYVVMTESVSDSDSI 704


>gi|561880|gb|AAA53116.1| gyrase-like protein alpha subunit [Staphylococcus aureus]
          Length = 800

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLRDIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E    ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDE---VVINVYNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 110/255 (43%), Gaps = 13/255 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +R       +G  V  I   + D+V+ + +    D + D    +       ++  
Sbjct: 561 IPVHKLRDI-RWKELGQHVSQIVPIEEDEVV-INVYNEKDFNTDAFYVFATQNGMIKKST 618

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
               +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +    
Sbjct: 619 VPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRA 678

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +  
Sbjct: 679 AGVKSINLKVED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLK 735

Query: 885 TAKDE--RVVSVERI 897
             K    R+V+   +
Sbjct: 736 ELKKNPHRIVAAHVV 750



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 83/219 (37%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +   R +   +  +  S       +  +     ++    + F +  +
Sbjct: 550 LVFTNKGRYLFIPVHKLRDIRWKELGQHVSQIVPIEEDEVVINVYNEKDFNTDAFYVFAT 609

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  + 
Sbjct: 610 QNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSLT 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +E+        GV   +   ++ VV  E + E++ +
Sbjct: 666 YNTSELSDTGLRAAGVKSINLKVEDFVVMTEGVSENDTI 704


>gi|325696554|gb|EGD38444.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK160]
          Length = 816

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 288/887 (32%), Positives = 464/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNAFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+++++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKDIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTIEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       +G+      F                             
Sbjct: 731 LQVLRELKAKPHRVFAAG-PVYGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 89/561 (15%), Positives = 192/561 (34%), Gaps = 43/561 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKDIILARSRFDKAKAEKRLHIVE--GLIRVLSILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 516 S---PRSFSASTIEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 573 IGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 632

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  Q + L       ++ V++ G+  R +  +  +      G++A ++ K + 
Sbjct: 633 KFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 691

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVE 895
              ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +     AK  RV +  
Sbjct: 692 ---VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAAG 748

Query: 896 RIRESEIVD------EAESTE 910
            +   E VD      EAE++E
Sbjct: 749 PVY-GEAVDFDLFTTEAEASE 768


>gi|328946256|gb|EGG40400.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1087]
          Length = 816

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 292/888 (32%), Positives = 466/888 (52%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTIEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L T+ G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTRNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F     +                       
Sbjct: 731 LQVLRELKAKPHRVFAAG-PVFGEAVDFDLFTTEAEAS---------------------- 767

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               DQI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 768 ---EDQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 88/561 (15%), Positives = 191/561 (34%), Gaps = 43/561 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 516 S---PRSFSASTIEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 573 IGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 632

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  Q + L       ++ V+  G+  R +  +  +      G++A ++ K + 
Sbjct: 633 KFAKLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 691

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVE 895
              ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +     AK  RV +  
Sbjct: 692 ---VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAAG 748

Query: 896 RIRESEIVD------EAESTE 910
            +   E VD      EAE++E
Sbjct: 749 PVF-GEAVDFDLFTTEAEASE 768


>gi|309804012|ref|ZP_07698094.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309809853|ref|ZP_07703703.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163931|gb|EFO66196.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308169805|gb|EFO71848.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 831

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 280/855 (32%), Positives = 444/855 (51%), Gaps = 47/855 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+IVE     +++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G     +   D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI ++       S   +L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLIFLITTNDGYIKQVALSDL 627

Query: 666 IQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGR 719
                      + +KL      +L VE      +N+ILL T     +RF ++ + +   R
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEVPLVGPR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+ I+L   D  +  AI          ++  +    A ++L      + T  K  S
Sbjct: 688 -AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDLVNKFTRAKRGS 746

Query: 780 SVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +   +  +  +     +  +   I   +      +  + D+ + +R   G    D    
Sbjct: 747 MILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTISD 806

Query: 836 NEIGALVAVFPVNDN 850
               AL    P+ + 
Sbjct: 807 GVPVALKLGMPLAEE 821



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 21/216 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMA 739
              ++E+  +L +  G   R  + + +        G     L  GD+VI        S  
Sbjct: 501 ALLSEEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNL 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +   R  Y    +  R      ++EI    ++  +          +L      
Sbjct: 555 YIFTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDL-----I 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            L  +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++
Sbjct: 610 FLITTNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTN 669

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
               +R  VNE+ +      GV   +    D+ VVS
Sbjct: 670 NAYALRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 705


>gi|42519097|ref|NP_965027.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
 gi|41583384|gb|AAS08993.1| topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
          Length = 826

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 279/894 (31%), Positives = 451/894 (50%), Gaps = 93/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YDFTPNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D V     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLPA-----GDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLADLQP 627

Query: 668 IN---RSGKIAMKLDSRD-EILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     A+KL S D +++ ++    +   +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITAIKLKSNDSKVVRIDQVQPDSKQEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIK------------------------------- 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++++G  K+          R+ +G+      K  +   +
Sbjct: 716 ------------------IGIITQRGAFKQLKLSLINKVTRAKRGVLVLRELKT-KPHRI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +A+    +N  + L +     I +  +E  +  R + G  +     D   VS+ 
Sbjct: 757 MAISSYGENHILHLNTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPVSLT 810


>gi|308177798|ref|YP_003917204.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 877

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 284/846 (33%), Positives = 416/846 (49%), Gaps = 97/846 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+  + I  + +T+EM++S+L YA +VI  RA+PD RDGLKPV RRILF M QMG+   
Sbjct: 10  PEDFVENIVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMAQMGLRPE 69

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K +VK AR+ GEVMGK HPHG+ AIYDA+ R+AQD+SLRL LI+G GNFGS+D D PAA 
Sbjct: 70  KGHVKSARVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGSLD-DGPAAP 128

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  +A  +  +L +D V+F PNYD  F +P VL + +PN+LVNG  GIAVGMAT
Sbjct: 129 RYTEARLAASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGTTGIAVGMAT 188

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNL EVV     ++ +P+  ++ LM+ I GPD P+G  + G  GIK+AY TGRG  
Sbjct: 189 NMAPHNLSEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGGSVTGLDGIKDAYRTGRGLF 248

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG- 307
             R    +EK S  +  +VVTE+PY V    ++EKI + V  K+I  I+D+ D +DR   
Sbjct: 249 RTRATVVLEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISDVVDLTDRHHG 308

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++VIELK G + + +L  LY+YT ++  F +N VAL   +P    L  +L  +V  R +
Sbjct: 309 LKLVIELKNGFNPNAVLASLYKYTPMEDSFGINNVALVNGQPRTMGLRELLTVYVDHRLD 368

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L K  DR H++ GL IA+ ++D+V+ IIR S     AR  LM         
Sbjct: 369 VVRRRTTHRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARERLMT-------- 420

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q   ILELRL +LT   + ++  E   L  EI+E 
Sbjct: 421 ------------------VFDLSEPQASHILELRLRQLTKYSKLELETEAEQLRKEIEEL 462

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM--------- 538
             IL S   L  ++  EL  + +   TPRRT++++       +   + E++         
Sbjct: 463 RAILESDQLLRNLVSDELGQMAETFGTPRRTKLLKSAQLAPLKGTALPEEVGTGKKAKLA 522

Query: 539 -VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V+ +    +      + R Q R     S   ++  D +T     S    +   ++ G 
Sbjct: 523 MEVSDTPCWVLLSATGQIARTQDRTDLDHSAARIK-HDVLTSQVASSARGEIGALTTTGR 581

Query: 598 VYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  +  +P+          A G  +   L L Q E +  ++P         N  V   
Sbjct: 582 IVRISLIDVPVLPESHGFPQLAHGVPIAEFLKLGQAETVAALVPL--------NQVVAIG 633

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK+G V+R   +    +NR    A+ L  +D +++       ++++  TK  Q +RF  S
Sbjct: 634 TKNGVVKRV--TPDYPLNRDEFEAITLKDKDVVVAATPAQDADELVFITKHAQLLRFSAS 691

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR   G+ GI L   DQVI   +V                              
Sbjct: 692 VVRA-QGRTGQGMSGIKLGADDQVIFFGVVPGG--------------------------- 723

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                         S++            L  +     K T   +F +  R+  G+RA  
Sbjct: 724 --------------SKQAVVATIAAGSQTLPGTSGQSVKLTDFSEFPVKGRATAGVRAHR 769

Query: 832 VSKINE 837
             K  +
Sbjct: 770 FVKGED 775



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 14/251 (5%)

Query: 650 FATKHGNVRRNKL--SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            A   G  RR KL  S  +   +   +  ++ +  +       +     +L +  GQ  R
Sbjct: 483 MAETFGTPRRTKLLKSAQLAPLKGTALPEEVGTGKKAKLAMEVSDTPCWVLLSATGQIAR 542

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              +  R     ++  ++   L    QV S A           RI  +  +       S 
Sbjct: 543 ---TQDRTDLDHSAARIKHDVLTS--QVASSARGEIGALTTTGRIVRISLIDVPVLPESH 597

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              ++      +        E    L    Q +   ++ G  KR +  D+ + NR     
Sbjct: 598 GFPQLAHGVPIAEFLKLGQAETVAALVPLNQVVAIGTKNGVVKRVTP-DYPL-NRD--EF 653

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A  +   +    +VA  P  D D+++ ++    L+R   + +R   R  +G+       
Sbjct: 654 EAITLKDKD---VVVAATPAQDADELVFITKHAQLLRFSASVVRAQGRTGQGMSGIKLGA 710

Query: 888 DERVVSVERIR 898
           D++V+    + 
Sbjct: 711 DDQVIFFGVVP 721



 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 77/224 (34%), Gaps = 24/224 (10%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-----GRNSVGVRGISLAK--GDQ 734
           D + S    +   +I   T  G+ VR  +  + V        + + GV      K    +
Sbjct: 559 DVLTSQVASSARGEIGALTTTGRIVRISLIDVPVLPESHGFPQLAHGVPIAEFLKLGQAE 618

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
            ++  + L+       +   +K ++    L   + E IT    D  V    +++  +   
Sbjct: 619 TVAALVPLNQVVAIGTKNGVVKRVTPDYPLNRDEFEAITLKDKDVVVAATPAQDADE--- 675

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI---------GALVAVF 845
                ++ +++     R S+   R   R+G+G+    +   +++              V 
Sbjct: 676 -----LVFITKHAQLLRFSASVVRAQGRTGQGMSGIKLGADDQVIFFGVVPGGSKQAVVA 730

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +    Q +  +   ++     +E  +  RAT GV      K E
Sbjct: 731 TIAAGSQTLPGTSGQSVKLTDFSEFPVKGRATAGVRAHRFVKGE 774


>gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
 gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
          Length = 833

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 294/917 (32%), Positives = 482/917 (52%), Gaps = 119/917 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWN 68
           E + K I +  I D M+++Y+ YA++VI+GR++PD+RDGLKPV RRIL+ M   +     
Sbjct: 3   ERKSKTIKN-DIVDIMKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+V+GKYHPHG+AA+YD + RMAQD+  R  LI+GQGNFGS+DGD PAA 
Sbjct: 62  KPYKKSARIVGDVIGKYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDTVDF PNYDGS +EP VL  + PN+L+NG  GIAVGMAT
Sbjct: 122 RYTEIRMTKIAEEMLKDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDID----------------------LDALMEIIRGPDFP 226
           NIP HNL EV+  C+ ++ N                           + +M I++ PDFP
Sbjct: 182 NIPPHNLKEVIKACLYLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFP 241

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           TG +I+    I   Y  G GSI I+    +     +++QI++TE+PY VNK+ ++ KIA+
Sbjct: 242 TGGIIINSKDIPKIYRNGTGSIKIKAKIEV-----NKDQIIITELPYMVNKSDLIIKIAD 296

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L +  +I  IAD++DES +   R+VI+L++    +++LNQLY+YT L + FS N V +  
Sbjct: 297 LSKSNKIQGIADIKDESTKD-IRIVIKLRKKTDPNIVLNQLYKYTQLTTTFSCNFVGIYK 355

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            KP +  ++ +L  F++FR +++ RRT++LL K +++ H L GL IAV N+D  V+II+ 
Sbjct: 356 NKPYQLNILDLLFNFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKT 415

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           + N   A ++LM++                            L ++Q   IL +RL RLT
Sbjct: 416 AKNTTDATQKLMKK--------------------------YKLDDIQVNEILNMRLQRLT 449

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGL 524
            L  + + NE       I+   +IL+S  + + +I  EL  ++     +  R T++ +  
Sbjct: 450 SLEIEKLLNEYQETKENIQTYKEILNSYDKQIELIINELHDLQKNYCKNDKRLTKLEDED 509

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
           +  + ++ I    +++  +  G++K+  +S         K      ++  D    +   +
Sbjct: 510 ISFDIKNLIPDNPVIIIYTDDGFIKKENISKVT------KTGKTTNLQKNDSAKFIINTT 563

Query: 585 THTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
            H  +L F+  G +Y   V+ +P  GS  ++G  + N++ LN  ++I  ++     E+ +
Sbjct: 564 NHKKLLLFTDTGKLYYLNVYDIPETGSGNSKGTHISNLIKLNTNDKIV-LIRTQIHENEY 622

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTK 701
           +N  +V  T+ G V+R  L ++   +++G + +KL+S D++L V      +EN +L+ +K
Sbjct: 623 SNYDMVCITEKGLVKRTSLEEYKN-SKNGSLVLKLNSDDKLLKVFFINKQEENYLLMLSK 681

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSA 760
             + + F I+ +R  A R + GV G+ L  + D+++  AI+     +             
Sbjct: 682 QSKYIIFNINQVRTVA-RLAKGVVGMLLNNENDKIVDCAIITKPMLEN------------ 728

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                               E  + T++ KGF K T   ++ + 
Sbjct: 729 ----------------------------------PNEYLLCTITNKGFIKLTPLEEYSVQ 754

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           NR  KG     V+       LV +   N   +  IL+++ G LI++ +N I + +R + G
Sbjct: 755 NRKTKGSYVMKVTNKTGEPILVQILAKNSKTNNCILITNTGQLIKIDINNISVTNRVSTG 814

Query: 880 VVI-FSTAKDERVVSVE 895
             I +    +  +VS  
Sbjct: 815 QPIEYKLEHNNYIVSAT 831


>gi|239917820|ref|YP_002957378.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|281413687|ref|ZP_06245429.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|239839027|gb|ACS30824.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
          Length = 868

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 288/845 (34%), Positives = 424/845 (50%), Gaps = 88/845 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+  ++ +
Sbjct: 22  EQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGH 81

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK AR+ GEVMGK HPHG+AAIYDA+ R+AQ +SLRL +++G GNFGS+D D PAA RYT
Sbjct: 82  VKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-DGPAAPRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+  AA  L  DL + TVDF PNYD  FQ+P VL A YPN+LVNG  GIAVGMATN+ 
Sbjct: 141 EARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMA 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV G   ++ +P+  L+A+M  I GPD P+G  I+G  G+++AYATGRG+  +R
Sbjct: 201 PHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDGVRDAYATGRGTFRMR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
               +E+ S  R  +VVTE+PY V    ++E+I   V  K++  IAD+ D +DR  G R+
Sbjct: 261 AAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRL 320

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK G +   +L  LYR+T L+  F +N VAL   +P+   L+ +L+ +V  R +VV 
Sbjct: 321 QIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYVDHRLDVVR 380

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K RDR H++ GL +A+ ++DEV+ IIR S +   AR  LM            
Sbjct: 381 RRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM------------ 428

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         G   L++VQ   ILELRL +LT   R +++ E + L   I E   I
Sbjct: 429 --------------GVFDLTQVQADHILELRLRQLTKFSRIELQAERDELQAAIAELEAI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE------------DM 538
           L+S +RL  ++  EL +V DE    RRT ++E                          D+
Sbjct: 475 LASDARLREVVSAELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAGAAEAGVDL 534

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V  +    +      + R   R      G   +  D    +   +    +   +S G +
Sbjct: 535 MVPDTACWALLSTSGRLLRTADRTPIAPQGRRRK-HDAFASVVPTTARGEIGALTSAGAL 593

Query: 599 YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ +   LP+    +             ++ L +GE +  ++P         +  +   T
Sbjct: 594 HRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL--------DTVMALGT 645

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPIS 711
            HG V+R +      +NR    A+ L   D ++       E + ++  T+ GQ +R+  S
Sbjct: 646 AHGVVKRVRPEW--PLNRQVVDAVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAAS 703

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   G    GV GI LA GD V++  +   A               A    ++    +
Sbjct: 704 AVRP-QGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEAD 762

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +                               S  G  K T   ++    R   G+RA  
Sbjct: 763 VLG-----------------------------SAPGSVKVTPLGEYPAKGRGTGGVRAHR 793

Query: 832 VSKIN 836
           + K  
Sbjct: 794 LLKGE 798



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 73/226 (32%), Gaps = 31/226 (13%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                    L +  G+ +R          GR           K D   + A V+   A  
Sbjct: 535 MVPDTACWALLSTSGRLLRTADRTPIAPQGRR---------RKHD---AFASVVPTTARG 582

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV----- 803
           +  I  +    A  RL + D           ++   +       L   E  +  V     
Sbjct: 583 E--IGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPLDTV 640

Query: 804 ----SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSD 858
               +  G  KR    ++ + NR  + + A  +   +   A+V   P  D  DQ++ ++ 
Sbjct: 641 MALGTAHGVVKRVRP-EWPL-NR--QVVDAVALKDGD---AVVGAAPAPDEADQLVFLTR 693

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            G L+R   + +R    A  GV     A  + V++      + + +
Sbjct: 694 TGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTE 739



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 83/263 (31%), Gaps = 51/263 (19%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  ++   +  +           D   SV   T   +I   T  G   R     + V   
Sbjct: 557 RTPIAPQGRRRKH----------DAFASVVPTTARGEIGALTSAGALHRLQAVDLPVAGE 606

Query: 719 RNSVGVRGIS----------LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++     ++          LAKG+ ++++ + L            +K +  +  L    
Sbjct: 607 PSAA--PAMTAALPAAELVPLAKGETLVAL-VPLDTVMALGTAHGVVKRVRPEWPLNRQV 663

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            + +     D+ V    + +   +       ++ ++  G   R ++   R    +G G+ 
Sbjct: 664 VDAVALKDGDAVVGAAPAPDEADQ-------LVFLTRTGQLLRYAASAVRPQGPAGGGVA 716

Query: 829 ATDVSKIN--------------EIGALVA-------VFPVNDNDQIILVSDKGTLIRVPV 867
              ++  +              E GA  A       V  V D +  +L S  G++   P+
Sbjct: 717 GIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTVTDGEADVLGSAPGSVKVTPL 776

Query: 868 NEIRIASRATKGVVIFSTAKDER 890
            E     R T GV      K E 
Sbjct: 777 GEYPAKGRGTGGVRAHRLLKGES 799


>gi|324991105|gb|EGC23039.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK353]
          Length = 816

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 291/887 (32%), Positives = 466/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A++++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANSELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRISELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D ++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDRVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +  V+   FG+      F                             
Sbjct: 731 LQVLRELKAKPHRVF-VAGPVFGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 87/561 (15%), Positives = 190/561 (33%), Gaps = 43/561 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANSELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                L     +  G   I+ L        I T     E+E+       V  T+ G ++R
Sbjct: 462 LMKRELRDVKKK-FGNPRISELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKR 514

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    + S    M     D ++ V        +L+ T LG  +  P+  +     +
Sbjct: 515 TS---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWK 571

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
                   +++  D    +      D+  +        +   +R+   +     + K+ S
Sbjct: 572 EIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKS 631

Query: 780 SVEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                +  E  + + L       ++ V++ G+  R +  +  +      G++A ++ K +
Sbjct: 632 LKFAKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD 691

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
               ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V V 
Sbjct: 692 ----VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFVA 747

Query: 896 RIRESEIVD------EAESTE 910
                E VD      EAE++E
Sbjct: 748 GPVFGEAVDFDLFTTEAEASE 768


>gi|262282824|ref|ZP_06060591.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261076|gb|EEY79775.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 816

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 291/887 (32%), Positives = 465/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEGDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V+  A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLVAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +  V+   FG+      F                             
Sbjct: 731 LQVLRELKTKPHRVF-VAGPVFGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 90/560 (16%), Positives = 188/560 (33%), Gaps = 41/560 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 516 S---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 573 IGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 632

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  Q + L       ++ V++ G+  R +  +  +      G++A ++ K + 
Sbjct: 633 KFAKLKNEGDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 691

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVER 896
              LVA F  N  D + L++ +G+L R+ V +I + SRA +G+ +          V V  
Sbjct: 692 --VLVAAFIAN-TDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFVAG 748

Query: 897 IRESEIVD------EAESTE 910
               E VD      EAE++E
Sbjct: 749 PVFGEAVDFDLFTTEAEASE 768


>gi|293501172|ref|ZP_06667023.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291096177|gb|EFE26438.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 800

 Score =  546 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/886 (30%), Positives = 453/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I        V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDIDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|327460305|gb|EGF06642.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1057]
          Length = 816

 Score =  546 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 290/887 (32%), Positives = 465/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTREEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D ++++     ++ ++L T+ G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDRVIALAPIKLDD-VMLVTRNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +  V+   FG+      F                             
Sbjct: 731 LQVLRELKTKPHRVF-VAGPVFGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 85/560 (15%), Positives = 187/560 (33%), Gaps = 41/560 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVLSILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 516 S---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 573 IGEHLSQTISNFDTREEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 632

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  + + L       ++ V+  G+  R +  +  +      G++A ++ K + 
Sbjct: 633 KFAKLKNEDDRVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 691

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVER 896
              ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V V  
Sbjct: 692 ---VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFVAG 748

Query: 897 IRESEIVD------EAESTE 910
               E VD      EAE++E
Sbjct: 749 PVFGEAVDFDLFTTEAEASE 768


>gi|268319491|ref|YP_003293147.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
 gi|262397866|emb|CAX66880.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
          Length = 826

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 276/894 (30%), Positives = 452/894 (50%), Gaps = 93/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD+  D LM+ ++GPDFPTG ++LG  GI+ AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDVTTDDLMKFVKGPDFPTGGIVLGTKGIREAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YDFTSNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLEKVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D +     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLPA-----GDKIVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLADLQP 627

Query: 668 IN---RSGKIAMKLDSRD-EILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     A+KL S D +++ ++    +   +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITAIKLKSNDSKVVRIDQVQPDSKEEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIK------------------------------- 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  ++++G  K+          R+ +G+      K  +   +
Sbjct: 716 ------------------VGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELKT-KPHRI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +A+    +N  + L +     I +  +E  +  R + G  +     D   VS+ 
Sbjct: 757 MAISSYGENHILHLNTSSNRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPVSLT 810


>gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
 gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
          Length = 819

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 282/890 (31%), Positives = 448/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTSLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A   +  D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVI-LVTYNGYALRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDSDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +      E V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISGEEVFSV 816


>gi|309807859|ref|ZP_07701791.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
 gi|308168961|gb|EFO71047.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
          Length = 662

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/744 (35%), Positives = 426/744 (57%), Gaps = 86/744 (11%)

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
            +PVVL AR P +LVNG  GIAVGM TNIP HNL E++ G   +++NPD+ +  LM  I 
Sbjct: 3   MKPVVLPARVPALLVNGVSGIAVGMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAIT 62

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTG +I+GR+GI  AY TG+G+IV+R  ++I+     RE+I+++EIPY VNKA ++
Sbjct: 63  GPDFPTGGIIMGRSGILRAYKTGKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELV 122

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           +KIA+L R+K +  I  ++DESD++G R+ I+++R ASA V+LN L++ T LQS F VNM
Sbjct: 123 KKIADLARDKVVDGITGIQDESDQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNM 182

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           VA+    P    L  IL+ ++A +E ++ RRTKY L KA  RAH++ GL IA+ ++DE++
Sbjct: 183 VAIVDGSPHVLNLKQILQYYLAHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEII 242

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           +IIR S N + A+ +L+ R                            L + Q +AIL++R
Sbjct: 243 KIIRGSKNSDIAKDQLITR--------------------------FGLDDRQAQAILDMR 276

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L RLTGL RD +  E   L  +I +  DIL+   R+  II  ELL ++      RRT I 
Sbjct: 277 LVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDERRTEIS 336

Query: 522 E-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +  ++ ++DED I ++++++T++H GY+KR+P   ++ Q RGG+G  G+ ++++DF+  L
Sbjct: 337 DSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHL 396

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             V+TH  +LFF++ G VY +K + +P     A+G  +IN++ L +GE++  ++    ++
Sbjct: 397 IYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQAVVKIATND 456

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           +   N Y++F TK+G V+R  +S+F  I RSG IA+ L   DE+ +V       +IL+ T
Sbjct: 457 T---NKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQNILIGT 513

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           +LG  V F  + +R    R + GVRGI L   D V+  +IV                   
Sbjct: 514 RLGYAVIFNENEVRTMG-RVASGVRGIKLRANDYVVGSSIV------------------- 553

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                           +D S    ISE+                    GKRT + ++ I 
Sbjct: 554 ----------------DDHSEVLVISEKGY------------------GKRTLASEYPIK 579

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R   G++  +V++ N  G LV V  V+ ++ ++L++D G +IR+ V+ +    RAT GV
Sbjct: 580 SRGCMGVKTANVTEKN--GPLVGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGV 637

Query: 881 VIFSTAKDERVVSVERIRESEIVD 904
            +    +  +V S+ R++  +  +
Sbjct: 638 RLIKLDQGTKVASLTRVKSEDNSE 661


>gi|282919066|ref|ZP_06326801.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316876|gb|EFB47250.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
          Length = 800

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YKLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316]
 gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909]
 gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
 gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909]
 gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/890 (31%), Positives = 449/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTSLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A   +  D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVI-LVTYNGYALRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDSDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +     DE V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEEVFSV 816


>gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
 gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
          Length = 819

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/890 (31%), Positives = 449/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTSLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A   +  D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVI-LVTYNGYVLRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDSDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +     DE V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEEVFSV 816


>gi|258424794|ref|ZP_05687668.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
 gi|257844958|gb|EEV68998.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
          Length = 800

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 273/886 (30%), Positives = 454/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RR+L+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRMLYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E    ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDE---VVINVYNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 71.1 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 504 ILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 560

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 561 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVYNEKDFNTDAFYVFATQNGMIKKSTV 619

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 620 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLRAA 679

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 680 GVKSINLKVED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 736

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 737 LKKNPHRIVAAHVV 750



 Score = 64.9 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 496 VMVPSEEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTV 549

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 550 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVYNEKDFNTDAFYVF-A 608

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 609 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSL 664

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 665 TYNTSELSDTGLRAAGVKSINLKVEDFVVMTEGVSENDTI 704


>gi|227889993|ref|ZP_04007798.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849437|gb|EEJ59523.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 826

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 278/894 (31%), Positives = 451/894 (50%), Gaps = 93/894 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YDFTTNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D V     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLPA-----GDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLADLQP 627

Query: 668 IN---RSGKIAMKLDSRD-EILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     A+KL S D +++ ++    +   +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITAIKLKSNDSKVIRIDQVQPDSKEEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIK------------------------------- 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  ++++G  K+          R+ +G+      K  +   +
Sbjct: 716 ------------------VGIITQRGAFKQLKLNLINKITRAKRGVLVLRELKT-KPHRI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +A+    +N  + L +     I +  +E  +  R + G  +     D   VS+ 
Sbjct: 757 MAISSYGENHILHLNTSSNRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPVSLT 810


>gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
 gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
          Length = 819

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/890 (31%), Positives = 450/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T+ G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTRLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A   +  D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVI-LVTYNGYALRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDSDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +     DE V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEEVFSV 816


>gi|256390970|ref|YP_003112534.1| DNA topoisomerase IV subunit A [Catenulispora acidiphila DSM 44928]
 gi|256357196|gb|ACU70693.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 820

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 281/840 (33%), Positives = 415/840 (49%), Gaps = 60/840 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                DE+ E+ I  + + DE+ +SY  YA +VI  RA+PD RDGLKPVHRRILF M  M
Sbjct: 6   TTPEPDEDFEERIIDIDVADELSDSYREYAYSVIYSRALPDARDGLKPVHRRILFQMNDM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-G 122
           G+  ++ YVK AR+ G+VMGK HPH + AIYD+L RMAQ W++R+ L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKSARVVGDVMGKLHPHSDTAIYDSLVRMAQSWAMRIPLVDGHGNFGSLGGD 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE RL  AA  + D + +DTV+F PNYDG  QEP VL + +PN+LVNG  GI
Sbjct: 126 DPPAAMRYTEARLSPAAMIMTDSIDEDTVEFGPNYDGQEQEPQVLPSAFPNLLVNGAAGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEVV     +I +P+  LD LM  + GPD PTG  I+G  GI++AY 
Sbjct: 186 AVGMATNMAPHNLGEVVAAARHLIKHPNATLDDLMRFVPGPDLPTGGQIIGEQGIRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG   +R  + IEK +  RE IVVTE+P+      ++ K+ ELV+ K++  I DL+D 
Sbjct: 246 TGRGVFKMRATAKIEKVTARREGIVVTELPFNTGPEKVISKVKELVQAKKLQGITDLKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           SDR  G ++VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 SDRFNGLKLVIEIKAGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RRT++   K  DR H++ GL IA+ ++D V+RIIR S +   A+  LM   
Sbjct: 366 LDHRFEVVRRRTEFRRTKRVDRLHLVEGLLIALVDIDRVIRIIRESDDAAAAKENLMA-- 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + LS+ Q   IL+  L RLT     ++ +E + L 
Sbjct: 424 ------------------------ALALSDKQATYILDTPLRRLTRFDSLELESERDKLT 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI++   IL S + L  ++  EL ++  +  TPRR+ +VEG L + +   +    + +V
Sbjct: 460 GEIRDLTAILESDTLLRKVVSDELAAISKQFATPRRSVLVEGALPVFEARPLEISDDPVV 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R      +    G +G+        D V  +   +    V   ++ G + 
Sbjct: 520 VLLSATGLLARTASGATKIGSGGERGK-------NDAVASVVTSTIRGEVGAVTTAGRLI 572

Query: 600 KEKVWRLPI--------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           +  V  LP+            A G  +   + L + ER+  +           +  +   
Sbjct: 573 RFPVIDLPVLPESAAKAAPSLAGGAPVSEFVRLEEDERVLCLCSLN-----PESPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R         NR     + L   D +    E  T E +++  T   Q +++  
Sbjct: 628 TVQGVVKRVVPD--YPRNRDTFEVITLKDGDSLAGATELRTGEEELVFITDDAQLLKYSA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   G  + G+ GI+L+    VI    V          +        +       T 
Sbjct: 686 SLVRP-QGCPAGGMAGITLSDDASVIFFGAVDPGHDGLIVSMAGSDDALVEAATTMKATP 744

Query: 771 EITSLKNDSSVEGNI------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                    +  G         E R          +   +E G      + D R     G
Sbjct: 745 YALYPTKGRATGGVRCQRFLKGEHRLVAAWAVNAPVYACTENGTPVALPAVDDRRDGSGG 804



 Score = 51.1 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 97/277 (35%), Gaps = 36/277 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  VV  +  G + R   S   +I   G+        D + SV T T   ++   T  G
Sbjct: 515 DDPVVVLLSATGLLARTA-SGATKIGSGGERG----KNDAVASVVTSTIRGEVGAVTTAG 569

Query: 704 QCVRFPISAIRVFAGRNSVGVRG----------ISLAKGDQVISMAIVLHADADYDERIC 753
           + +RFP+  + V     +               + L + ++V+ +  +            
Sbjct: 570 RLIRFPVIDLPVLPESAAKAAPSLAGGAPVSEFVRLEEDERVLCLCSLNPESPGLALGTV 629

Query: 754 Y-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +          + DT E+ +LK+  S+ G        EL+  E+ ++ +++     + 
Sbjct: 630 QGVVKRVVPDYPRNRDTFEVITLKDGDSLAG------ATELRTGEEELVFITDDAQLLKY 683

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TL 862
           S+   R     G          +++  +++    V+     ++VS  G          T+
Sbjct: 684 SASLVRPQ---GCPAGGMAGITLSDDASVIFFGAVDPGHDGLIVSMAGSDDALVEAATTM 740

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIR 898
              P        RAT GV      K E R+V+   + 
Sbjct: 741 KATPYALYPTKGRATGGVRCQRFLKGEHRLVAAWAVN 777


>gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str.
           Langeland]
 gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra]
 gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           B1 str. Okra]
 gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. 230613]
          Length = 956

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 299/949 (31%), Positives = 479/949 (50%), Gaps = 90/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ+++ R+ LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ DV+   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGIRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +LK +V  ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKSMLKYYVEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+++                             +++Q  AILEL L +LTGL     
Sbjct: 418 RENLIEK--------------------------FSFTDIQAEAILELMLYKLTGLEVVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   I +   IL S   LL +IK+EL+ VK+  +  R+T I+E      ++ E+
Sbjct: 452 EKEYKELEKLINKLTKILKSEKELLKVIKKELIEVKETYNDKRKTSIIEDDEKAKIDVEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ G+ KR+ L  Y    R       +  R+ DF   +   +T  ++  
Sbjct: 512 IIVEEDVVLTLSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFIIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I       +  +  +   ++F
Sbjct: 569 VTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKTIDLSETIMEAFSIEDFTAQKD---MLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  +A+KL   + ++  +      +E    + T+ G    
Sbjct: 626 ITDSGYIKKTTL-DKFNTNYTKIMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQ 761
               ++     RN +G +   +   D +  +    + +          E +  +  +   
Sbjct: 685 IEEPSLEPV-DRNIIGYKLFDILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDN 743

Query: 762 RRLIS--GDTEEITSLKNDSSVEGNISEERCQELK------------------------- 794
           +  IS   D+ +I  L +D      I     Q +K                         
Sbjct: 744 KSHISLFTDSSKILVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            ++  I   SEKG  KRT   + +I   S +  +       ++   LV++      +Q  
Sbjct: 804 EEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKF-----KHKEDKLVSILIKEHGEQKN 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I+++++K  +IR     +    +   GV   S    ++V+    I E++
Sbjct: 859 ILIITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+   ++ F   G  Y    + L   S +  G  +        G++I
Sbjct: 740 LKDNKSHISLFTDSSK-ILVLFDDEGKAYYIPAFMLQ--SIKEEGINISAF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           + +           ++ + F+++ G ++R  LS+      S ++       D+++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIK 851

Query: 691 TQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                  IL+ T+    +RF   A+     + + GV GISL   D+VI  +I+   D   
Sbjct: 852 EHGEQKNILIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILASIIDENDTRK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKAKDK 920


>gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae
           ATCC 13813]
          Length = 819

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/890 (31%), Positives = 448/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTSLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A      D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKSVEDYVVTVAPIQLEDVI-LVTYNGYALRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDSDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +     DE V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEEVFSV 816


>gi|157150712|ref|YP_001450523.1| DNA topoisomerase IV subunit A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075506|gb|ABV10189.1| DNA topoisomerase IV, A subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 816

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 292/886 (32%), Positives = 468/886 (52%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----ILTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +  V+   FG+      F     +G                      
Sbjct: 731 LQVLRELKTKPHRVF-VAGPVFGEAVDFDLFTTEAEAG---------------------- 767

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +QI+ ++S+KGT   + + ++ ++ R + G  I  +  DE V
Sbjct: 768 ---EEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDSISDEEV 810



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 81/542 (14%), Positives = 166/542 (30%), Gaps = 80/542 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +       
Sbjct: 516 S---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDI-RWK 571

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            +G                                +H+S          E I +   DS 
Sbjct: 572 EIG--------------------------------EHLSQTISNFDTKEEVIYTELLDSF 599

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK-INEIG 839
            EG                    ++ G  KR    +F          ++   +K  NE  
Sbjct: 600 EEGTY---------------FAATKLGQIKRVERKEFSPWR--TYKSKSLKFAKLKNEDD 642

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++A+ P+  +D ++LV+  G  +R  + E+ +      GV   +  KD+ V++   I  
Sbjct: 643 QVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD-VLAAAFIAN 700

Query: 900 SE 901
           ++
Sbjct: 701 TD 702


>gi|327469988|gb|EGF15452.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK330]
          Length = 816

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 291/887 (32%), Positives = 463/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPCLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 408 ------------SYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  L    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFLSPAKTTQHMLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSIKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F                             
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVFGETVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + +  ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADFSLSERTSNGSFISDTISDEEVFS 812


>gi|324992853|gb|EGC24773.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK405]
 gi|327462160|gb|EGF08487.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1]
          Length = 816

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 289/887 (32%), Positives = 463/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +  LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSIKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F                             
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVFGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|125718047|ref|YP_001035180.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK36]
 gi|125497964|gb|ABN44630.1| ParC, putative [Streptococcus sanguinis SK36]
          Length = 816

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 294/888 (33%), Positives = 468/888 (52%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ ++ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDSNTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R    +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFVATKLGQIKRVDRKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGT-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V+  A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLVAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F            T  ++ NE         
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVFGEAVDFDLF------------TTEAEANE--------- 768

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 769 ----EQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|329667367|gb|AEB93315.1| topoisomerase IV subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 826

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 276/887 (31%), Positives = 448/887 (50%), Gaps = 93/887 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLISK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YEFTHNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D V     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLPA-----GDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + ++   NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLKA---NLNFLIATNDGYIKQVTLADLQP 627

Query: 668 IN---RSGKIAMKLDSRD-EILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     ++KL S D +++ ++    +   +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITSIKLKSNDSKVVRIDQVQPDSKQEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIK------------------------------- 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++++G  K+          R+ +G+      K  +   +
Sbjct: 716 ------------------IGIITQRGAFKQLKLSLINKVTRAKRGVLVLRELKT-KPHRI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +A+    +N  + L +     I +  +E  +  R + G  +     D
Sbjct: 757 MAISSYGENHILHLNTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTD 803



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 81/235 (34%), Gaps = 14/235 (5%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F    R+   A       EI        E+  +L +K G   R  + + +     ++  
Sbjct: 477 EFGSPRRTEITAKAAKI--EINEKALVADEDVRVLVSKDGYLKRSSLRSFQSTDDEDNG- 533

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS---GDTEEITSLKNDSS 780
                L  GD+V+    +   D  Y               LI     +T +  S +    
Sbjct: 534 -----LPAGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLD 588

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            +  I               L  +  G+ K+ +  D + + R+ K    T +   +    
Sbjct: 589 SDEEIIRVFEVNDLKANLNFLIATNDGYIKQVTLADLQPT-RTYKSRAITSIKLKSNDSK 647

Query: 841 LVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +V +  V  +   +I L++++   +R  ++EI  +     GV   +   D+ +V+
Sbjct: 648 VVRIDQVQPDSKQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIVN 702


>gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
 gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 293/920 (31%), Positives = 457/920 (49%), Gaps = 107/920 (11%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +   E+E  +    + + M   +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  
Sbjct: 6   NKAPEKEPSLVISPLEEIMGERFGRYSKYIIQERALPDARDGLKPVQRRILYAMFHDGNT 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           ++ ++ K A+  G V+G YHPHG++++YDA+ RM+QDW +R+ LI+  GN GS+D DP A
Sbjct: 66  FDHQHRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSIDDDPAA 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K A  LL+D+ KDTV F PN+D +  EP VL AR+P +LVNG  GIA G 
Sbjct: 126 AMRYTEARLAKIAGTLLEDIDKDTVLFAPNFDDTENEPTVLPARFPVLLVNGATGIAAGY 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL EV+D  +  +  P   L+ LMEI+ GPDFPTG +++G+ GI +A+ TG+G
Sbjct: 186 ATNIPPHNLSEVIDAAIYRMQRPKCSLEELMEILPGPDFPTGGIVMGKKGIVDAFTTGKG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +VIR  + I  T     QI++ EIPY+V K++M+ K+ ++   + I  I D+RDE+DR 
Sbjct: 246 RVVIRARTEI-VTGKTCNQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIRDETDRT 304

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI++K+ A  +VILN  Y+ T LQ  +S NMV++   +P +  LIG+L AF+A RE
Sbjct: 305 GLRIVIDVKKDADPNVILNYFYKNTDLQIYYSYNMVSIVNKRPVQMGLIGMLDAFIAHRE 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV+RR++YL NK  +R H+L GL  AV+ +DEV+ +IR S +   A+R L +       
Sbjct: 365 EVVLRRSRYLYNKMEERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTE------- 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              +   SE Q  AI+ LRL RLT      +R E   L  E++ 
Sbjct: 418 -------------------SFGFSETQAEAIVTLRLYRLTSTDIVALREEFAQLVNEMEM 458

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSH 544
              IL S + L  ++ +EL  +K E   PRR+ I   + +  ++    I  E +++T S 
Sbjct: 459 LKTILESETVLKSVLIKELREIKKEYADPRRSEIQAEVEEIVIDKTAMIPNERVMITASR 518

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVKRV L  Y     G    +   +++ D +     V T  ++L F+S G      V+
Sbjct: 519 DGYVKRVSLRSY-----GASDNAMTGLKEGDVLVGQLEVDTLDTLLLFTSKGNYAHLPVY 573

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++     +  G  L   +S++  ++I   +      S     ++V  ++ G V++  +S 
Sbjct: 574 QIDEAKWKDVGSHLNKYVSIDGDDKIINAIVVKNFSSY---AWIVTVSRRGQVKKTPISQ 630

Query: 665 F-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + +Q N     AM L   DE++         D+++ ++ G   R+  S +    G  S G
Sbjct: 631 WQVQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRSGWISRYS-SDLVPANGTKSQG 689

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ ++LAK D + +                                              
Sbjct: 690 VKALNLAKDDTLAAAC-------------------------------------------- 705

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       + Q +  +S+KG  KR    D  ++ R  KG       K N    +  
Sbjct: 706 --------SYSDERQSLWVLSDKGNMKRIKMSDINVTGRPVKGEIVVKRLKTNPY-HIAY 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-------------ER 890
              V   D ++L+  +  +  +   ++ + SR           KD             + 
Sbjct: 757 CQCVQPYDSLMLMDPQLQI--LQAKDVPMMSREATFSTPLELKKDWGLIKGIEEVRIVDH 814

Query: 891 VVSVERIRESEIVDEAESTE 910
            V  + I   +  +E+E+ E
Sbjct: 815 PVGEDEIPFEDYDEESEADE 834


>gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R]
 gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R]
          Length = 819

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/890 (31%), Positives = 448/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTSLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A      D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKSVEDYVVTVAPIQLEDVI-LVTYNGYALRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDRDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +     DE V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEEVFSV 816


>gi|324994507|gb|EGC26420.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK678]
          Length = 816

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 292/887 (32%), Positives = 466/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +  LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F            T  ++ +E   L     
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVFGEAVDFDLF------------TTEAEASEKQILQ---- 773

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                   ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 774 --------VLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 812


>gi|67921390|ref|ZP_00514908.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
 gi|67856502|gb|EAM51743.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
          Length = 838

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 291/908 (32%), Positives = 461/908 (50%), Gaps = 116/908 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  EIIPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 132 LSPIADQSMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG + +IDNP++  + L +II GPDFPTG  I+   GI+ AY  G+G I +RGV
Sbjct: 192 NLGEVVDGLIGLIDNPELSDEKLWKIIPGPDFPTGGEIINSQGIEEAYRHGKGIIPVRGV 251

Query: 254 SHIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             I++    +++      I+VTE+PYQVNK+A +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 252 VKIQRMDVGKKRRKERTAIIVTELPYQVNKSAWIEKIADLVNNGRLDGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE+
Sbjct: 312 MRVVIELKRDAVAKTVLKELYKKTALQQNFGAIMLALLDNQPCQLSLRQLLEEFLKFRED 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+    L + ++R H+L GL I++ +LD  + I+R + +  TA+             
Sbjct: 372 TLTRQYNNELQECQNRLHLLQGLLISLNDLDRTIDILRHAADGTTAK------------- 418

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                        +     + LSE Q  AIL + + RLTGL R  ++ E + L  +I E 
Sbjct: 419 -------------VQFQRDLNLSEAQANAILAMPMRRLTGLERQKLQAESDELEGKINEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-------LLDMEDEDCIVREDMVV 540
             +L++R   L ++K+EL S+K +    RRTRIV+              +     +D V 
Sbjct: 466 ETLLNNRPEFLKVLKKELRSLKRKYGDTRRTRIVQATAQKSSSTTTSTSQRKSTNKDKVE 525

Query: 541 TVSHLGYVK-RVPLSVYRAQRR--------GGKGRSGVVMRDEDFVTDLFIVST-----H 586
           + S+        P +++  Q            +G       D+    +   + +      
Sbjct: 526 SKSNQQTETVTQPFNLFTPQTPPKNAILEMTYQGTICWRSPDDKIPDNHLPIYSEPIQER 585

Query: 587 TSVLFFSSLGFVYKEKVWRLP--IGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
              +  + +G  Y   V  +P     P +    L      +  + I+          +  
Sbjct: 586 EQFVVITDIGKAYPVNVADVPPIDIQPISLLSLLPKSAQRDSKKVISAFFVL----ENKE 641

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           N  ++  T  G ++R +LS+   +   G + +KL   D +  +    +  ++ +    G+
Sbjct: 642 NHDLLLLTNQGKIKRIQLSELDGLTNRGLVLIKLKDNDYLEFISPTKEGEEVAIAMSSGR 701

Query: 705 CVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +RFP +  +    GRN+ G + + L  G+ +IS   +                      
Sbjct: 702 VLRFPVVDEVIHIMGRNAQGNQALKLRYGENIISCVTLDE-------------------- 741

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                             + +L VS+ G+ KR +    R++   
Sbjct: 742 ---------------------------------NKTVLLVSKLGYAKRLNITGLRMTKLG 768

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G +A   ++  +  +L+ +   +D+  + L++++   + +   ++RI  +  +G  + 
Sbjct: 769 DIGTQALQFAQ--KTDSLLGMIKASDDRNVTLLTNQNNTVNIVAKKVRIWGKDGQGDRLI 826

Query: 884 STAKDERV 891
             +  E +
Sbjct: 827 KLSNQEVI 834



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +   +L ++ +G  KR    +   ++NR    I      K+ +   L  + P  + +++ 
Sbjct: 641 ENHDLLLLTNQGKIKRIQLSELDGLTNRGLVLI------KLKDNDYLEFISPTKEGEEVA 694

Query: 855 LVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    G ++R PV +  I I  R  +G         E ++S   + E++ V
Sbjct: 695 IAMSSGRVLRFPVVDEVIHIMGRNAQGNQALKLRYGENIISCVTLDENKTV 745


>gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
 gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/890 (31%), Positives = 449/890 (50%), Gaps = 84/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E    ++++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNASTVDELGK-----REDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L  N+++    E I     + E    +        T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEII----YAELVDDFTKETYFAVTSLGQIKRFERQEISPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++ K A   +  D +++V     E+ I L T  G  +RF I+ + V     + GV+ 
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVI-LVTYNGYALRFSINDVPVVGS-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I           +  + H  + +R+        +       V   + 
Sbjct: 685 MNLKDSDHIVSAFIANTT------SLYLLTHRGSLKRMAIDVIPTTSRANRGLQVLRELK 738

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +  K    ++            SS++F                       L +   
Sbjct: 739 SKPHRVFKAGPVYLED----------SSFEF----------------------DLFSSVS 766

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++ D  +L  +S  G +  V +++   + R + G  +     DE V SV
Sbjct: 767 NHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDEGVFSV 816


>gi|327489842|gb|EGF21632.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1058]
          Length = 816

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 291/888 (32%), Positives = 467/888 (52%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTVEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKMGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAIADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       +G+      F     +G                      
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVYGEAVDFDLFTTEAEAG---------------------- 767

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +QI+ ++S+KGT   + + ++ ++ R + G  I  T  D+ V S
Sbjct: 768 ---EEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDKEVFS 812


>gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 831

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 283/815 (34%), Positives = 415/815 (50%), Gaps = 58/815 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
               +DE+ E+ I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +M
Sbjct: 6   TTPPTDEDFEERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK +R+ G+VMGK HPHG+ AIYDAL RMAQ +S+RL LI+G GNFGS D D
Sbjct: 66  GLRPDRGHVKSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-D 124

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE RL  AA  ++  + +DTVDF+PNYDG   EP V+ + +PN+LVNG  GIA
Sbjct: 125 LPAAMRYTEARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIA 184

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV     +I  PD  LD LM  + GPD PTG  I+G  GI++AYA 
Sbjct: 185 VGMATNMAPHNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTIIGLDGIRDAYAK 244

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG+  +R    +E+ S  R+ I+VTE+P+ V    ++ KI ELV  K++  I+DL+D S
Sbjct: 245 GRGTFRMRAKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLS 304

Query: 304 DRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR     +VIE+K G   + +L +LYR T ++  F +N VAL   +P    L  +L+ +V
Sbjct: 305 DRHKGLNLVIEIKNGFIPEAVLEELYRLTPMEETFGINNVALVEGQPRTLGLRELLQVYV 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +VV RR+ Y   K  DR H++ GL IA+ N+DEV+++IR S +   AR  LM+   
Sbjct: 365 DHRLDVVRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLME--- 421

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q   IL+  L RLT   + ++  E  +L  
Sbjct: 422 -----------------------VFELSEIQAAYILDTPLRRLTRFDKLELDGEKETLES 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCIVREDMV 539
           EI E   ILSS  +L  ++  EL  V     TPRRT ++E      +      +  +  +
Sbjct: 459 EIAELTAILSSEDKLRKVVSDELAQVSKTFGTPRRTVLLESSGVTRNASVPLEVADDPCL 518

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  S  G + R       A    G+G         D +  +   +    V   ++ G + 
Sbjct: 519 VLFSSTGLLARTT----DASPLAGEGDRSA----HDVLVSVVNSTVRGEVGVVTNQGRMI 570

Query: 600 KEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + +V  LP   P A       G  +   ++L+ GE +  I     D        +   T 
Sbjct: 571 RVQVVDLPTLPPSANPPSLSGGHPVSEYVTLSPGETVVGIGSLDPD-----GPGLALGTA 625

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISA 712
            G V+R         NR     + L   D ++  VE  ++++D++  T   Q +R+P   
Sbjct: 626 QGVVKRVVPD--YPANRDDFEVIGLKDGDTVVGAVELTSEDHDLVFITSEAQLLRYPAVN 683

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ G+ L  G  VI   +V  A       I          ++      + 
Sbjct: 684 VRP-QGRPAGGMAGVRLDGGATVIWFGVVDPARESRVVTIAGSSTALPGTQIGGAKISDY 742

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                     G +  +R     LK + +L ++  G
Sbjct: 743 AEYPAKGRATGGVRVQRF----LKGEDVLLLAWAG 773



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 95/273 (34%), Gaps = 35/273 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  +V  +  G + R   +D   +   G       + D ++SV   T   ++ + T  G
Sbjct: 514 DDPCLVLFSSTGLLART--TDASPLAGEG----DRSAHDVLVSVVNSTVRGEVGVVTNQG 567

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICY- 754
           + +R  +  +            S G      ++L+ G+ V+ +  +              
Sbjct: 568 RMIRVQVVDLPTLPPSANPPSLSGGHPVSEYVTLSPGETVVGIGSLDPDGPGLALGTAQG 627

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +          + D  E+  LK+  +V G +      EL  ++  ++ ++ +    R  +
Sbjct: 628 VVKRVVPDYPANRDDFEVIGLKDGDTVVGAV------ELTSEDHDLVFITSEAQLLRYPA 681

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI---- 870
            + R   R           +++    ++    V+   +  +V+  G+   +P  +I    
Sbjct: 682 VNVRPQGR---PAGGMAGVRLDGGATVIWFGVVDPARESRVVTIAGSSTALPGTQIGGAK 738

Query: 871 -------RIASRATKGVVIFSTAKDERVVSVER 896
                      RAT GV +    K E V+ +  
Sbjct: 739 ISDYAEYPAKGRATGGVRVQRFLKGEDVLLLAW 771


>gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
 gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
          Length = 817

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 285/772 (36%), Positives = 430/772 (55%), Gaps = 49/772 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+   M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A+  
Sbjct: 1   MSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG +HPHG+++IY+AL R++QDW LR  L+E  GN GS+DGDP AA RYTE RL K 
Sbjct: 61  GNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL EV
Sbjct: 121 AGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  + +I +PD  L+ LME I GPDFPTG ++ G  GIK AY TGRG IV+R  + IE 
Sbjct: 181 LDALIYLIKHPDASLEKLMEFIPGPDFPTGGIVQGVEGIKKAYQTGRGRIVVRAKTEIET 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G R+QI VTEIPY+VNKA ++++I +L   K++  I + RDE+DR G R+ IELKR A
Sbjct: 241 LRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRNA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A  ILN L + T LQ  ++ NMVA++  +P R  L  IL +++AF++EVV RRT Y L+
Sbjct: 301 NAAGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLAFQKEVVRRRTSYNLD 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+ R H++ GL  A++ LD+V++ IR S N + A++ L+ +                  
Sbjct: 361 KAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQ------------------ 402

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      S+VQ  AI+ L+L RLT     ++ +E   L   I E   ILS    L 
Sbjct: 403 --------YAFSDVQAEAIVTLQLYRLTNTDVTELEDEHQHLNDLIDEYQLILSDDEELS 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++++E+ +VK E   PRRT+I +    L+++ +  +  ED+VV VSH GY+KR  +  +
Sbjct: 455 KVVRREMQAVKKEFGNPRRTQIEDQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +A      G     +R++D+   +   +T   +  F++ G V    V  L     +  G+
Sbjct: 515 KASSLDEDG-----LREDDYPLLVTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGE 569

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQINRSGK 673
            +   + L   E I   M F   +        +F T  G V+++   D+    +      
Sbjct: 570 HISQTIGLTDNEEIIKAMVF---DKLDLPGSFIFGTSDGQVKQSAYKDYQPGSRYKSHAS 626

Query: 674 IAMKLDSRD-EILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +A+KL S D  ++SV   E   +   +L  ++ G  VRF ++ + V   R + GVR I+L
Sbjct: 627 MAVKLKSADATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPVTGLRTA-GVRAINL 685

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
              D +  + +V        +R+  +    A + +   +       +    V
Sbjct: 686 KDDDTLADLVLVKDG-----QRVASITQRGAFKEMPIDEIAVGARARRGELV 732



 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 79/223 (35%), Gaps = 23/223 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ--------VISMA 739
            T   E+ ++L +  G   R  I + +  +           L + D          ++  
Sbjct: 489 VTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDG------LREDDYPLLVTQTNTLAHL 542

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +         R  +       +      ++ I    N+  ++  +      +L L   F
Sbjct: 543 FMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLTDNEEIIKAMV----FDKLDLPGSF 598

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ---IILV 856
           I   +  G  K+++  D++  +R  K   +  V   +    +V+V      D+   ++ +
Sbjct: 599 IFG-TSDGQVKQSAYKDYQPGSRY-KSHASMAVKLKSADATVVSVDYYEPTDENRSLLAI 656

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           S +G  +R  V ++ +    T GV   +   D+ +  +  +++
Sbjct: 657 SREGYAVRFDVADVPVTGLRTAGVRAINLKDDDTLADLVLVKD 699



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 23/248 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   VV  +  G ++R+ +        S      L   D  L V        + + T  G
Sbjct: 493 NEDVVVLVSHAGYIKRSSI---RSFKASSLDEDGLREDDYPLLVTQTNTLAHLFMFTNRG 549

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHAD---------ADYDER 751
             +  P+  +         G    + I L   +++I   +    D         +D   +
Sbjct: 550 HVIYRPVHEL-ADVRWKDTGEHISQTIGLTDNEEIIKAMVFDKLDLPGSFIFGTSDGQVK 608

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               K      R  S  +  +     D++V          E   + + +L +S +G+  R
Sbjct: 609 QSAYKDYQPGSRYKSHASMAVKLKSADATVVSV----DYYEPTDENRSLLAISREGYAVR 664

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               D  ++     G+RA ++   + +  LV    V D  ++  ++ +G    +P++EI 
Sbjct: 665 FDVADVPVTGLRTAGVRAINLKDDDTLADLV---LVKDGQRVASITQRGAFKEMPIDEIA 721

Query: 872 IASRATKG 879
           + +RA +G
Sbjct: 722 VGARARRG 729



 Score = 38.4 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
             ++ ++  +       ++ +S  GY  R  ++          G   + ++D+D + DL 
Sbjct: 636 ATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDTLADLV 695

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +V     V   +  G   +  +  + +G+   RG+ +++ L  +   +I   + +  D
Sbjct: 696 LVKDGQRVASITQRGAFKEMPIDEIAVGARARRGELVLHRLKSHP-HKIADFLAYDAD 752


>gi|323351526|ref|ZP_08087180.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
 gi|322122012|gb|EFX93738.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
          Length = 810

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 292/883 (33%), Positives = 465/883 (52%), Gaps = 85/883 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEM 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + IEK
Sbjct: 181 IDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTEIEK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A
Sbjct: 241 LKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++   
Sbjct: 301 NTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRFDKA 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                     
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------------- 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   +E Q  AI+ L+L RLT      +  E   L  +I     I+     + 
Sbjct: 400 -----KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR     +
Sbjct: 455 NLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A      G+     RD+D +  +    T   +L F+SLG V    V  L     +  G+
Sbjct: 515 SASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGE 569

Query: 617 ALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RS 671
            L   + + +  E +     + E   S+       ATK G ++R +  +F        +S
Sbjct: 570 HLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKS 625

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ I+L K
Sbjct: 626 LKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKAINLKK 683

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V++ A + + D+ Y      +    + +R+   D           +   N   +  +
Sbjct: 684 DD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRGLQVLR 729

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ELK K   + +     FG+      F     +                           D
Sbjct: 730 ELKTKPHRVFSAG-PVFGEAVDFDLFTTEAEAS-------------------------ED 763

Query: 852 QII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S
Sbjct: 764 QILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFS 806



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 88/561 (15%), Positives = 191/561 (34%), Gaps = 43/561 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 229 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 288

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 289 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 345

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 346 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 403

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 404 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 455

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 456 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 509

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 510 S---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 566

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 567 IGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 626

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  Q + L       ++ V++ G+  R +  +  +      G++A ++ K + 
Sbjct: 627 KFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 685

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVE 895
              ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +    K    RV S  
Sbjct: 686 ---VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFSAG 742

Query: 896 RIRESEIVD------EAESTE 910
            +   E VD      EAE++E
Sbjct: 743 PVF-GEAVDFDLFTTEAEASE 762


>gi|322385168|ref|ZP_08058815.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
 gi|321270792|gb|EFX53705.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
          Length = 816

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 292/888 (32%), Positives = 469/888 (52%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YAELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEEDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSIKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       +G+      F               ++   I        
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVYGQAVDFDLF--------------TTEAEAI-------- 767

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +QI+ ++S+KGT+  + + ++ ++ R + G  I  T  DE V S
Sbjct: 768 ---EEQILQVLSNKGTVYEINLVDLSLSERTSNGSFISDTISDEEVFS 812



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 81/542 (14%), Positives = 166/542 (30%), Gaps = 80/542 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       V  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETY------VSVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +       
Sbjct: 516 S---PRSFSASTLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDI-RWK 571

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            +G                                +H+S          E I +   DS 
Sbjct: 572 EIG--------------------------------EHLSQTISNFDTKEEVIYAELLDSF 599

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK-INEIG 839
            EG                    ++ G  KR    +F          ++   +K  NE  
Sbjct: 600 EEGTY---------------FAATKLGQIKRVERKEFSPWR--TYKSKSLKFAKLKNEED 642

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++A+ P+  +D ++LV+  G  +R  + E+ +      GV   +  KD+ V++   I  
Sbjct: 643 QVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD-VLAAAFIAN 700

Query: 900 SE 901
           ++
Sbjct: 701 TD 702


>gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657]
 gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 956

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 298/949 (31%), Positives = 478/949 (50%), Gaps = 90/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP +L A++PN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ D++   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGIRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +LK +V  ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKSMLKYYVEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+++                             +++Q  AILEL L +LTGL     
Sbjct: 418 RENLIEK--------------------------FSFTDIQAEAILELMLYKLTGLEVVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   I +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+
Sbjct: 452 EKEYKELEKLINKLTKILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++  
Sbjct: 512 IIVEEDVVLTLSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I       +  +  +   ++F
Sbjct: 569 ITKEGNMYQIKVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFTAQKD---MLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  +A+KL   + ++    V+   +E    + T+ G    
Sbjct: 626 ITDSGYIKKTTL-DKFNTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQ 761
               ++     RN +G +   +   D +  +    + +          E +  +  +   
Sbjct: 685 IEEPSLEPV-DRNIIGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDN 743

Query: 762 RRLIS--GDTEEITSLKNDSSVEGNISEERCQELK------------------------- 794
           +  IS   D+ +   L +D      I     Q +K                         
Sbjct: 744 KSHISLFTDSSKTLVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            ++  I   SEKG  KRT   + +I   S +  +       ++   LV++      +Q  
Sbjct: 804 EEDISIYFSSEKGLIKRTLLGELKIEGNSTQVYKF-----KHKDDKLVSILIKEHEEQKN 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I+++++K  +IR     +    +   GV   S    ++V+    + E++
Sbjct: 859 ILIITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILASIVDEND 907



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 76/190 (40%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+ T ++ F   G  Y    + L   S +  G  +        G++I
Sbjct: 740 LKDNKSHISLFTDSSKT-LVLFDDEGKAYYIPAFMLQ--SIKEEGINISAF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           + +           ++ + F+++ G ++R  L +      S ++       D+++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFSSEKGLIKRTLLGELKIEGNSTQVYKFKHKDDKLVSILIK 851

Query: 691 TQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             E    IL+ T+    +RF   A+     + + GV GISL   D+VI  +IV   D   
Sbjct: 852 EHEEQKNILIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILASIVDENDTRK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKAKDK 920


>gi|170078543|ref|YP_001735181.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
 gi|169886212|gb|ACA99925.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
          Length = 845

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 294/920 (31%), Positives = 465/920 (50%), Gaps = 115/920 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D  +   I   ++  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 8   MAQQL---DLLQSGHIIPTALHVEMEQSYMEYAMSVIVGRALPDVRDGLKPVHRRILYAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ G+V+GKYHPHG+ ++YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 65  YELGLSPDRPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSTRYPLLAGHGNFGSI 124

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL       +L  + +D VDF  N+DGS QEPVVL  + P +L+NG 
Sbjct: 125 DNDPPAAMRYTETRLSPVSFEAMLAQISEDIVDFTDNFDGSQQEPVVLPVQLPILLLNGS 184

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+P HNLGEVVDG +A+ID+P+I+ + L  +I  PDFPTG  I+   G+++
Sbjct: 185 SGIAVGMATNMPPHNLGEVVDGLIALIDDPEIEDEKLWAVIPAPDFPTGGEIVDLAGVRD 244

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RG+ H+E     R++      +VVTE+PYQVNKAA +EKIA+LV + +I
Sbjct: 245 AYRTGRGIIPMRGIVHLEVLQVGRKRKRDVNALVVTELPYQVNKAAWIEKIADLVNDGKI 304

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+D+RDESDRQG RVVIELKR A  + +L  LY+ T+LQS F   +++L   +P + +
Sbjct: 305 SGISDIRDESDRQGMRVVIELKRDAEPEKVLKLLYKKTALQSNFGAILLSLVNNQPRQLS 364

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL+ F+ FREE V R+ +Y L +   R H + GL +A+ NLD V+ I+R + +  TA
Sbjct: 365 LKAILQEFLEFREETVTRQYRYELEQKETRQHSVEGLLLALNNLDAVIEILRNAADGTTA 424

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++                              +  SE Q+ AIL + + RLTGL R  +
Sbjct: 425 KQQF--------------------------QAALGFSESQSDAILAMPMRRLTGLERQKL 458

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   L  EI +   +LS R  LL  +K+EL S+K +   PRRTR+ +      +   +
Sbjct: 459 EQESTELATEIAKLNKLLSDRHELLKALKRELRSLKRKFADPRRTRLPDVPSPEPEPVTV 518

Query: 534 VREDMVVTVS----HLGYVKRVPLSVYRAQ----------RRGGK--GRSGVVMRDEDFV 577
             E      +         K  P+     Q            GG   G     + DE+  
Sbjct: 519 EAEPDTPAATPKKKRQSRKKEEPVLALLPQLTETSHVAIAASGGVYWGNDDAGLLDEEPT 578

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS---LNQGERITTIM 634
                + T   ++  +  G  +   +  LP    + + + LI++L    L    +  T  
Sbjct: 579 IFKAQIGTQKKLIVCTDQGKAFPVAIADLPYQEQRDKPQ-LIDLLPDHALRDDHQPITQF 637

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
             P++ + ++   ++  T  G ++R    +       G   +KL  +D +          
Sbjct: 638 LLPDNLAEYD---LLLLTAQGRIKRLPAIELESFTSRGLSLIKLKDKDTLKFACFVKGGE 694

Query: 695 DILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            + +    G+ +  P++       GR S G + + L   +Q+++                
Sbjct: 695 QVAIAVSSGRVLHLPVNDHEIPVMGRTSQGNQALRLRFNEQIVA---------------- 738

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                          +  +R  EL L       +SE+G+GK+ +
Sbjct: 739 ------------------------------CVPCQRHNELYL-------ISEEGYGKKLA 761

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           +   R+  R   G         ++   L+ +F  +  + +++   +  L  +P ++  + 
Sbjct: 762 ASSLRLGKRGDMGNHVMRF--ESKTDLLLTLFVPDQQESLLVKDSQENLDLLPFSKFNLT 819

Query: 874 SRATKGVVIFSTAKDERVVS 893
            + + G  +   +  +R+V+
Sbjct: 820 EKDSPGQKLVKLSGGDRLVN 839


>gi|21904354|gb|AAM79232.1| putative DNA topoisomerase IV subunit C [Streptococcus pyogenes
           MGAS315]
          Length = 807

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 284/881 (32%), Positives = 445/881 (50%), Gaps = 85/881 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  + IE+  G ++
Sbjct: 181 MIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRTEIEELKGGKQ 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IELK+ A +  IL
Sbjct: 241 QIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELKKEADSQTIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K+   KA  R 
Sbjct: 301 NYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSKFDKAKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDE++ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVLSILDEIIALIRSSDNKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   SE Q  AI+ L+L RLT      ++NE N L   I     I+   + +  ++K+E
Sbjct: 395 VSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRE 454

Query: 505 LLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +   PR + +       +++    I  E+  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 515 EVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN----RSGKIAMK 677
            +    E I     + +  +S++    V  T++G ++R    +         +S K    
Sbjct: 570 SNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKL 625

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            D +D ++++     E+ +LL TK G  +RF    +    G  S GV+GI+L   D + S
Sbjct: 626 KDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKGINLKNDDSLAS 683

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              V             +    + +R+   D  + +       V         +ELK K 
Sbjct: 684 AFAVTS------NSFFVLTQRGSLKRMAVDDIPQTSRANRGLLV--------LRELKTKP 729

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL-- 855
             +      G    TS+  F                       L    P  + +Q +L  
Sbjct: 730 HRVFLA--GGVQSDTSAEQF----------------------DLFTDIPEEETNQQMLEV 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 766 ISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 805


>gi|302864518|ref|YP_003833155.1| DNA gyrase subunit A [Micromonospora aurantiaca ATCC 27029]
 gi|302567377|gb|ADL43579.1| DNA gyrase, A subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 1259

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 260/731 (35%), Positives = 404/731 (55%), Gaps = 42/731 (5%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TEC+L   A  +L D+ +DTVD + NYDG  +EP +L +R PN+L+NG  GIAVGMAT 
Sbjct: 561  NTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATK 620

Query: 190  IPTHNLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            IP HNL E+       +++P+      L+AL+EI++GPDFPT  +I+G+ GI++AY TGR
Sbjct: 621  IPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQAGIQDAYRTGR 680

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD- 304
            GSI +R V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  
Sbjct: 681  GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 740

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  
Sbjct: 741  RTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEH 800

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +IR SP  E AR+ L++     
Sbjct: 801  QIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIR----- 855

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                  + + EVQ  AIL+++L RL  L R  I ++L  L +EI
Sbjct: 856  ---------------------LLDIDEVQATAILDMQLRRLAALERQRILDDLAKLEVEI 894

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             +  DIL+   R   I+ +EL  +  +    RRT+IV    ++  ED I RED+VVT++ 
Sbjct: 895  ADLKDILAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSMEDLIAREDVVVTITR 954

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K +
Sbjct: 955  TGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAY 1014

Query: 605  RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             LP  S  A+G+ + N+L+    E+I  I+  P  + +    Y+V ATK+G V++ +L +
Sbjct: 1015 ELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQVA---PYLVLATKNGLVKKTRLEE 1071

Query: 665  FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVG 723
            F      G IA+ L   DE++       E+D+LL +K  Q +RF  +   +   GR + G
Sbjct: 1072 FDSNRSGGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPMGRATSG 1131

Query: 724  VRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            V G+  +  D+++++ +V    D        Y K    +   + G   +       +   
Sbjct: 1132 VIGMRFSGEDELLAVEVVREGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERR 1191

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDVSKINEIGAL 841
            G +       +   E  +  ++  G   RT     R + +R+  G++  D+   + +  +
Sbjct: 1192 GGL---VGAVVIDPEDELFAITSNGGVIRTPVKPVRRTRDRNTMGVKLMDL--PDGVTIV 1246

Query: 842  VAVFPVNDNDQ 852
                  ++ D+
Sbjct: 1247 AIARNADEPDE 1257



 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 11/142 (7%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E E             I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPETPEPLAAVVQHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYT 131
           L++G GNFGS   DP AA RY 
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYC 142


>gi|325689657|gb|EGD31661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK115]
          Length = 816

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 287/887 (32%), Positives = 463/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEGELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  ++V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANTIEIDTASLIVEEETYISVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       +G+      F                             
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVYGEAVDFDLFTTE------------------------AE 765

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++   + ++S+KG    + + ++ ++ R + G  I  T  DE V S
Sbjct: 766 ASEEQILQVLSNKGAAYEINLADLSLSERTSNGSFISDTISDEEVFS 812



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 86/561 (15%), Positives = 191/561 (34%), Gaps = 43/561 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q      +            I      L   I 
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVP---ILTSYIA 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              +I+ +RSR      ++ L + +     R   I++ ++ +    +     +E++ V+ 
Sbjct: 352 HRKEIILARSRFDKAKAEKRLHIVE--GLIRVISILDEVIALIRASENKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +       V L +YR                 + +  L                 +Y 
Sbjct: 410 DFTEEQAEAIVTLQLYRLTNTDVVVLEEEEGELREKIAMLA--------AIIGDERTMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +     L  +        I T     E+E+       +  T+ G ++R 
Sbjct: 462 LMKRELRDVKKKFGNPRLSELQDTANTIEIDTASLIVEEETY------ISVTRSGYIKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   + S    M     D ++ V        +L+ T LG  +  P+  +     + 
Sbjct: 516 S---PRSFSASTLEEMGKRDDDRLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRWKE 572

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                  +++  D    +      D+  +        +   +R+   +     + K+ S 
Sbjct: 573 IGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 632

Query: 781 VEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               +  E  Q + L       ++ V++ G+  R +  +  +      G++A ++ K + 
Sbjct: 633 KFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKKDD- 691

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVE 895
              ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +    K    RV +  
Sbjct: 692 ---VLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFAAG 748

Query: 896 RIRESEIVD------EAESTE 910
            +   E VD      EAE++E
Sbjct: 749 PVY-GEAVDFDLFTTEAEASE 768


>gi|154488789|ref|ZP_02029638.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
 gi|154082926|gb|EDN81971.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
          Length = 891

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 286/929 (30%), Positives = 445/929 (47%), Gaps = 129/929 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMSLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+  AA  +  D+ ++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIVGRKGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR    R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L+             
Sbjct: 377 RSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIA------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-------------------- 531
           +S   L G++  E+     +  TPRRT +++   +                         
Sbjct: 471 ASDEALDGVVIDEMDDAVAKYGTPRRTVLLDEDEEGNLTPVVAHGDDGVSANAMAAARAA 530

Query: 532 ------------------------------CIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          I  E   V +S  G + R       A  R
Sbjct: 531 ATVSSAAADVAAAAKAAKKAGDENATASALQIDDEPCAVMLSATGLIARTSED---AVER 587

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-----RGK 616
                +      +D +  +F  ST +S    +S G +    V  LP  S         G 
Sbjct: 588 WENRSASDGRAKDDQIVSMFRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGV 647

Query: 617 ALINILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               +L + +      GER+   +  P  +     + +   T++G V+R        ++ 
Sbjct: 648 KAEELLGMTENTDPIRGERVIAAIDMPSTDDGGQLVPLALGTRNGVVKRWNRESPTTMDS 707

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              I   L   DE+L+      E+ ++  +     + F    +R   GR + G+ GI LA
Sbjct: 708 WSVID--LKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAGIRLA 764

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G  V + A+V      ++       +   +  L S     + ++  DS           
Sbjct: 765 EGCSVAAFAVVPDGKVTWN-------YEEGENGLFSASGAVVLTVAGDSEA--------- 808

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAVFPVN 848
                     L  +E G  K T    +    R   G+R+    K  +   L  V  +P  
Sbjct: 809 ----------LPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLILAFVGAYP-- 856

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               +   +  G  + +P  ++R     T
Sbjct: 857 ----LHASTQSGAPVELPKPDMRRDGSGT 881



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 76/242 (31%), Gaps = 16/242 (6%)

Query: 681 RDEILSVETCTQENDIL--LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            DE  +      +++    + +  G   R    A+  +  R++   R    AK DQ++SM
Sbjct: 551 GDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGR----AKDDQIVSM 606

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                  +           ++    L     +   S+      E  +      +    E+
Sbjct: 607 FRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGER 666

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIR----------ATDVSKINEIGALVAVFPVN 848
            I  +               +  R+G   R          +  V  + +   ++A     
Sbjct: 667 VIAAIDMPSTDDGGQLVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDDDEVLAAAEAR 726

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D D+++ VS   +L+      +R   R   G+     A+   V +   + + ++    E 
Sbjct: 727 DEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVVPDGKVTWNYEE 786

Query: 909 TE 910
            E
Sbjct: 787 GE 788



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 83/283 (29%), Gaps = 39/283 (13%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +    V  +  G + R       +         +    D+I+S+   +  +   L T  
Sbjct: 563 DDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAKD-DQIVSMFRTSTRSSYGLVTSA 621

Query: 703 GQCVRFPISAIRVFAGRN----SVGVRGISLA---------KGDQVISMAIVLHADADYD 749
           G+ V   +  +   +       + GV+   L          +G++VI+   +   D    
Sbjct: 622 GRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVIAAIDMPSTDDGGQ 681

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                +   +   +  + ++       +   ++ +       E + +++ +   ++    
Sbjct: 682 LVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDDDEVLAAAEARDEDRLVFVSTDSSL- 740

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV------------------------F 845
               + + R   R+  G+    +++   + A   V                         
Sbjct: 741 LTFEAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVVPDGKVTWNYEEGENGLFSASGAVVL 800

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            V  + + +  ++ G     P+       R T GV      K 
Sbjct: 801 TVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKG 843


>gi|152965512|ref|YP_001361296.1| DNA topoisomerase IV subunit A [Kineococcus radiotolerans SRS30216]
 gi|151360029|gb|ABS03032.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 826

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 297/814 (36%), Positives = 420/814 (51%), Gaps = 61/814 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + +  EMQ ++L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+   + +VK
Sbjct: 15  ERIVDIDVEQEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILYMMQDMGLVPTRAHVK 74

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEVMGK HPHG+ AIYDAL R AQ +++RL L++G GNFGS+D  P A  RYTE 
Sbjct: 75  SARVVGEVMGKLHPHGDVAIYDALVRQAQPFTMRLPLVDGHGNFGSLDAGPAAQ-RYTEA 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  +   L +D VDF PNYD    EP VL A +PN+LVNG  GIAVGMATN+P H
Sbjct: 134 RMAPAALLMTTGLDEDVVDFVPNYDDRLTEPGVLPAAFPNLLVNGASGIAVGMATNMPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+    ++ +PD DL ALM  + GPDFPTG  ++G  GI++AYATGRGS   R  
Sbjct: 194 NLVEVVNAARHLLKHPDADLPALMRFVPGPDFPTGGRVVGLEGIRDAYATGRGSFRTRAS 253

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK  G R+ IVVTE+PY      ++EKIA+ V+ K++  +AD+ D SDR    R+VI
Sbjct: 254 VRIEKI-GRRQGIVVTELPYGAGPERLIEKIADNVKNKKLQGVADVTDLSDRHHGMRLVI 312

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G   + +L QLYR T ++  F +N VAL   +P    L  +L+ F+  R +VV RR
Sbjct: 313 EVKNGFVPEAVLEQLYRLTPMEESFGINNVALVEGQPRTLGLKELLEVFIGHRVDVVRRR 372

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA+DR H++ GL  A+ ++DEV+ I+R S + + A   L +R            
Sbjct: 373 TRFRLGKAQDRLHLVDGLLTAIVDIDEVIAIVRSSDDAQAALARLTER------------ 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q R IL+++L RLT   R ++  E   L   I +   IL 
Sbjct: 421 --------------FSLSEAQGRYILDMQLRRLTRFSRIELEREQAELRATIAQLQAILD 466

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSHLGYV 548
              RL G++  EL +V  E  TPRRT ++            +  I  +   V +S  G +
Sbjct: 467 DEGRLRGLVGDELAAVAAEHGTPRRTVLLTSSGPASGAAPTQLEIGDDPCWVLLSSAGLL 526

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
            R       A+  G +GR        D V      +    V   +S G + +  V  LP+
Sbjct: 527 ARTGS----AEPLGTEGRRSR----HDLVVAAAPATARGHVGVLTSAGRLVRVPVLDLPV 578

Query: 609 -----GSPQ-ARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNK 661
                G P  A G  +   ++  +GER  TI+P P       ++     AT  G V+R  
Sbjct: 579 LPETAGRPNLAGGTGVKEFVTFGKGERALTIVPLPVTGVEDPDDPGFALATAGGVVKRVV 638

Query: 662 LSDFIQINRSGKIAMKLDS-----RDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
           L      NR     + L       RDE++ +V   T E +++  T   Q +RFP + +R 
Sbjct: 639 LDPLG--NREEVEVITLKDLGPRQRDEVVAAVGLTTGEEELVFVTSDAQLLRFPAALVRP 696

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + G+ GI L+ G +V++M  V     D           S   +L S     +   
Sbjct: 697 -QGRAAAGMAGIKLSAGARVVAMTAVAPDAVDPVVVTVAGDSTSGVSQLGSVKVTPLAEY 755

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                  G +   R      + + +L ++  G G
Sbjct: 756 PPKGRATGGVRCHRF----ARGEDVLLLAWAGQG 785



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 82/286 (28%), Gaps = 26/286 (9%)

Query: 629 RITTIMPFPEDESSW----NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            I  +    +DE        +     A +HG  RR  L        SG    +L+  D+ 
Sbjct: 457 TIAQLQAILDDEGRLRGLVGDELAAVAAEHGTPRRTVL-LTSSGPASGAAPTQLEIGDDP 515

Query: 685 LSVET------CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
             V            +   L T+  +     + A      R  VGV    L    +++ +
Sbjct: 516 CWVLLSSAGLLARTGSAEPLGTEGRRSRHDLVVAAAPATARGHVGV----LTSAGRLVRV 571

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++        +     +             +E  +          +           + 
Sbjct: 572 PVL--------DLPVLPETAGRPNLAGGTGVKEFVTFGKGERALTIVPLPVTGVEDPDDP 623

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATD-VSKINEIGALVAVFPVNDNDQIILVS 857
                +  G  KR       + NR    +     +        + AV      ++++ V+
Sbjct: 624 GFALATAGGVVKRVVLD--PLGNREEVEVITLKDLGPRQRDEVVAAVGLTTGEEELVFVT 681

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               L+R P   +R   RA  G+     +   RVV++  +    + 
Sbjct: 682 SDAQLLRFPAALVRPQGRAAAGMAGIKLSAGARVVAMTAVAPDAVD 727



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 86/237 (36%), Gaps = 22/237 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR-------NSVGVRG-ISLAKGD 733
           D +++    T    + + T  G+ VR P+  + V              GV+  ++  KG+
Sbjct: 545 DLVVAAAPATARGHVGVLTSAGRLVRVPVLDLPVLPETAGRPNLAGGTGVKEFVTFGKGE 604

Query: 734 Q---VISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSLKNDSSVEGNISEE 788
           +   ++ + +    D D             +R ++   G+ EE+  +           E 
Sbjct: 605 RALTIVPLPVTGVEDPDDPGFALATAGGVVKRVVLDPLGNREEVEVITLKDLGPRQRDEV 664

Query: 789 RCQE-LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP- 846
                L   E+ ++ V+      R  +   R   R+  G+    +S    + A+ AV P 
Sbjct: 665 VAAVGLTTGEEELVFVTSDAQLLRFPAALVRPQGRAAAGMAGIKLSAGARVVAMTAVAPD 724

Query: 847 -VND------NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            V+        D    VS  G++   P+ E     RAT GV     A+ E V+ +  
Sbjct: 725 AVDPVVVTVAGDSTSGVSQLGSVKVTPLAEYPPKGRATGGVRCHRFARGEDVLLLAW 781


>gi|282854006|ref|ZP_06263343.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|282583459|gb|EFB88839.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|314966750|gb|EFT10849.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981083|gb|EFT25177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091909|gb|EFT63885.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093334|gb|EFT65310.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL060PA1]
 gi|315103410|gb|EFT75386.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA2]
 gi|327327575|gb|EGE69351.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 844

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 292/890 (32%), Positives = 427/890 (47%), Gaps = 106/890 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+PD DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E   
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERGE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I+S  + L  ++  EL  V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +             G      D +      +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPS--------GGDRATHDVIISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +     L      A       G  L +++ L +GER   +        S     +  
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL-----SGEGPSLAL 618

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFP 709
            T++G V+R          +     + L   DE++       E+ ++   T+    + FP
Sbjct: 619 GTRNGIVKRVNPELLG---KESWEVIGLKDGDEVVGAVEMGDEDLELCFVTQGAALLHFP 675

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            SA+R   GR+  GV GI     D VI         +            + +        
Sbjct: 676 ASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK-------- 724

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                              E G  K T    +    R+  G+R 
Sbjct: 725 -----------------------------------EPGSIKLTPFDQYPPKGRATGGMRC 749

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
               K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 750 QRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +                      L+  ++ E+  LK+   V G +      E+
Sbjct: 602 RALAVTSLSGEGPSLALGTRNGIVKRVNPELLGKESWEVIGLKDGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA2]
 gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL092PA1]
          Length = 844

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 291/891 (32%), Positives = 432/891 (48%), Gaps = 108/891 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAATSAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSL 595
              V +S  G + R+  +          G      R   D +      +        +S 
Sbjct: 512 PCWVLLSATGLLARIDTAD---------GLPSDGDRATHDVIISSARTTARGDFGIITSA 562

Query: 596 GFVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +     L      A       G  L +++ L +GER   +        S     + 
Sbjct: 563 GRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL-----SGAGPSLA 617

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
             T++G V+R          +     + L + DE++       E+ ++   T+    + F
Sbjct: 618 LGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHF 674

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P SA+R   GR+  GV GI     D VI         +            + +       
Sbjct: 675 PASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK------- 724

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                               E G  K T    +    R+  G+R
Sbjct: 725 ------------------------------------EPGSIKLTPFDQYPPKGRATGGMR 748

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 749 CQRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +  A                   L+  ++ E+  LKN   V G +      E+
Sbjct: 602 RALAVTSLSGAGPSLALGTRNGIVKRVNPELLGKESWEVIGLKNGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 819

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 279/831 (33%), Positives = 416/831 (50%), Gaps = 63/831 (7%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M        D    + I  + +T EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ 
Sbjct: 1   MATPTKPTPDSPAGERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+   K +VK +R+ G+VMGK HPHG+A+IYDA+ R+ Q + LR+ LI+G GNFGS
Sbjct: 61  MSEMGLRPEKGHVKSSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RLQ +A  + DDL +D VDF PNYD S  +P VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVV     ++ +PD  L+ LM+ + GPD PTG  I+G  G+K+
Sbjct: 180 SGIAVGMATNMAPHNLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKIIGLAGVKD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYA GRG+   R    +E  +  +  +VVTE+PY V    ++EKI + V  K+IV I+D+
Sbjct: 240 AYANGRGAFKTRAKVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISDV 299

Query: 300 RDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR    R+VI +K G S D +L QLYR T L+  FS+N V L   +P+   L  +L
Sbjct: 300 TDLTDRNHGLRLVIGIKTGFSPDAVLEQLYRLTPLEDNFSINAVTLVDGRPQTLGLKALL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + F+  R +VV RR+ + L K R+R H++ GL +A+ ++DEV+++IR S + + AR  L 
Sbjct: 360 EVFLKHRLQVVTRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTRLR 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LSE+Q   ILELRL RLT   R ++  E +
Sbjct: 420 D--------------------------VFDLSELQAEYILELRLRRLTKFSRIELEAEAD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC------ 532
            L  EI     +LS  + +  ++  EL  V D+  TPRRT + E    +           
Sbjct: 454 KLRAEIARLEALLSDDTLIRALVSDELEQVADKFGTPRRTLLTEAPASIATTSRSAARKN 513

Query: 533 -----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                I  +  VV +S  G V RV ++       G    +       D +      ++ T
Sbjct: 514 LPVLEIADDPCVVLLSTTGRVIRVAVAE------GDSLLAAPRRSKHDAIRSRVTTTSRT 567

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQA----RGKALINILSLNQGERITTIMPFPEDESSW 643
            +   ++ G + +     LP     +     G  +   L++   ER+  ++    D+   
Sbjct: 568 EIGAITNRGRLIRFTAMDLPSVPSSSVQLDAGAKINEYLAIESKERVLALVSLDSDQP-- 625

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               +   T+ G V+R     +        IA  L   DE++       ++++   T   
Sbjct: 626 ----IALGTRLGTVKRVIPGGWPSKPEFEVIA--LKDGDELVGAAHSPDDSELTFITSNT 679

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q + F  SA+R      + G+ G+ +  G  VI    +   DA        +   SA   
Sbjct: 680 QLLHFSASAVRPQGL-TAGGMAGVRVDAGASVIFFDAI---DAGSAPIAVTVSGSSATIA 735

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                  ++++ +   +        R   L LK + +LT++  G    T+ 
Sbjct: 736 GTDPGRAKVSAFEQFPAKGRGTGGVRAHSL-LKGEDVLTLAWVGTAPATAV 785



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 90/266 (33%), Gaps = 21/266 (7%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  VV  +  G V R  +++   +      A +    D I S  T T   +I   T  G
Sbjct: 521 DDPCVVLLSTTGRVIRVAVAEGDSL----LAAPRRSKHDAIRSRVTTTSRTEIGAITNRG 576

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA----IVLHADADYDERICYMKHMS 759
           + +RF    +       S  V+  + AK ++ +++     ++     D D+ I     + 
Sbjct: 577 RLIRFTAMDLPSVP---SSSVQLDAGAKINEYLAIESKERVLALVSLDSDQPIALGTRLG 633

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
             +R+I G        +  +  +G   E         +  +  ++        S+   R 
Sbjct: 634 TVKRVIPGGWPSKPEFEVIALKDG--DELVGAAHSPDDSELTFITSNTQLLHFSASAVRP 691

Query: 820 SNRSGKGIRATDVSKINEI--------GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
              +  G+    V     +        G+      V+ +   I  +D G        +  
Sbjct: 692 QGLTAGGMAGVRVDAGASVIFFDAIDAGSAPIAVTVSGSSATIAGTDPGRAKVSAFEQFP 751

Query: 872 IASRATKGVVIFSTAKDERVVSVERI 897
              R T GV   S  K E V+++  +
Sbjct: 752 AKGRGTGGVRAHSLLKGEDVLTLAWV 777


>gi|21518734|gb|AAM60779.1| topoisomerase IV subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 800

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 275/886 (31%), Positives = 452/886 (51%), Gaps = 100/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  AV+ LD V  +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKAVSILDRVFELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                      +  +E Q  A + L+L RLT      +  E   L   IK+  DIL +  
Sbjct: 409 ----------VVEFTEEQAEATVMLQLYRLTNTDIVALEGEHKELEALIKQLRDILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E     E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDTEVMEPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A      G   + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ + + E +  +     ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +     R + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSDTGLR-AAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSEND----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR S    +++ R+ +GI      K N    + A     ++ Q
Sbjct: 703 ------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKNNPHRIVAAHVVTGEHSQ 756

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 757 YTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 109/260 (41%), Gaps = 11/260 (4%)

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             +   ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T 
Sbjct: 498 EPSEEVILSMTRHGYIKRTSI---RSFNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTN 554

Query: 702 LGQCVRFPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            G+ +  P+     +        V  I   + D+V+ + +    D + D    +      
Sbjct: 555 KGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGM 613

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRI 819
            ++      +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   
Sbjct: 614 IKKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD 673

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +     G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G
Sbjct: 674 TGLRAAGVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRG 730

Query: 880 VVIFSTAKDE--RVVSVERI 897
           + +    K+   R+V+   +
Sbjct: 731 ITLLKELKNNPHRIVAAHVV 750



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 82/215 (38%), Gaps = 15/215 (6%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DY 748
           E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D       
Sbjct: 501 EEVILSMTRHGYIKRTSIRSF------NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTN 554

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             R  ++              + ++ +      E  I+    ++      ++   ++ G 
Sbjct: 555 KGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-ATQNGM 613

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +    +
Sbjct: 614 IKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITVITNKGMSLTYNTS 669

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           E+        GV   +   ++ VV  E + E++ +
Sbjct: 670 ELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|317968471|ref|ZP_07969861.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0205]
          Length = 830

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 276/759 (36%), Positives = 420/759 (55%), Gaps = 53/759 (6%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D  +E+ I  + +  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  
Sbjct: 11  PDPSDERRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTP 70

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 128 ERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL   A+  + D++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGSDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEVVD  +A++  P++  + L+E++ GPDFPTG  +L  +G+++ Y  GRG
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPELSDEKLLELVPGPDFPTGGEVLTGSGLRDTYLYGRG 250

Query: 247 SIVIRGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           SI +RGV+HIE+    + +     +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RD
Sbjct: 251 SIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVV+EL+R A+ + +L  L R T+LQS +   ++AL   KP + +L  +L+ F
Sbjct: 311 ESDRDGMRVVVELRRDANPEKVLADLQRRTALQSNYGAILLALVHGKPIQLSLRQLLQEF 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + +RE  ++RRTK+ L +A DR  V+ GL  A+  L  V+ +I  +P+  +A+  L    
Sbjct: 371 LDYRELTIIRRTKHALKRAEDRLEVVEGLITALNALQRVIEMITAAPDASSAKARLQVH- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + ++E Q  A+L + L RLTGL ++ +R E + L 
Sbjct: 430 -------------------------LDINERQADAVLAMPLRRLTGLEQESLRKEADDLR 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            E      +L  R  LL  +  E  ++K    TPRRTR+VEG  ++  +    +      
Sbjct: 465 QERARLRHLLDERPALLDTMVAEFKALKKRFATPRRTRLVEGGDELVAQRTAAQRPNTEL 524

Query: 542 VSHLGYVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTS 588
           +    +           Q  G          G+          D       +  +S+  +
Sbjct: 525 LRQRAFEGLPSDGRLVIQADGQVKVIGPQLLGRLHLDEPAPLGDNPSPARLILPISSRPA 584

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F+  G V   + W     +P    K L   +S   GER+  ++P P++    +   V
Sbjct: 585 LLAFTDAGRVALLR-WEFAGQNPGTLEKFLPEGMS---GERVVQLLPLPQEAEGKS---V 637

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              +  G  +R  L++F  ++      +KL     +  V  C   +D+++ +  G+ +R 
Sbjct: 638 GLLSSDGRFKRLPLAEFQDLSGRATSILKLKEGVSLKRVVLCQDGDDLMVGSSTGRLLRL 697

Query: 709 PISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            ++       GRN+ G   + L  G++VI  A V    A
Sbjct: 698 EVNEENLPVMGRNAQGPVLLRLLPGEEVIGAAAVNTDGA 736



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           + + + +  +S  G  KR    +F+ +S R      AT + K+ E  +L  V    D D 
Sbjct: 631 EAEGKSVGLLSSDGRFKRLPLAEFQDLSGR------ATSILKLKEGVSLKRVVLCQDGDD 684

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++ S  G L+R+ VNE  + +  R  +G V+      E V+    +     V
Sbjct: 685 LMVGSSTGRLLRLEVNEENLPVMGRNAQGPVLLRLLPGEEVIGAAAVNTDGAV 737


>gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
 gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
          Length = 870

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 305/941 (32%), Positives = 470/941 (49%), Gaps = 148/941 (15%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 13  IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPYRKCA 72

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL
Sbjct: 73  RVVGDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132

Query: 136 QKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH  +  ++ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 133 APIAHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG +A+ID+P ++   L EII GPDFPTG  I+   GI  AY T +G I IRGV+
Sbjct: 193 LGEIVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEIIDTEGIIEAYRTSKGIIPIRGVT 252

Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           H+E  S       +R  IVVTE+PYQVNK+A +EK+AELV + R+  IAD+RDESDR G 
Sbjct: 253 HLETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIRDESDRLGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR   +  IL+ LYR T+LQ+ F   ++AL   KP + +L  +L+ F+ FRE+ 
Sbjct: 313 RVVIELKRETDSQKILDNLYRQTALQTNFGTILLALVENKPCQLSLRQLLEEFLKFREQT 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+  + L +A+ R H+L GL IA+ NLD V+ I+R SP+  TA++   +         
Sbjct: 373 LIRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSE--------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q+ +IL + + RLTGL +  +  E   L   I +  
Sbjct: 424 -----------------AFNLSEEQSDSILSMPMRRLTGLEQQKLDTEYQELEQRINQLQ 466

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------VEGLLDMEDEDCIVREDMVVT 541
            +L+ R+ L+  +K+EL S+K +   PRRTRI            ++ D     ++ +V+ 
Sbjct: 467 TLLNDRNELMKSLKKELRSLKRKFANPRRTRIRSCLSTPSSSSPEILDSLPPGKKRVVLP 526

Query: 542 VSHLGYVKRVPL----------SVYRAQRRG----------------------------- 562
                 +K              +  +AQ+ G                             
Sbjct: 527 TVTDEPIKTENAAKKASDSPKNATPKAQQSGQNSSFTLFTPQTPPADALLTITYQGYIYW 586

Query: 563 -----GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                       + ++EDF      ++    ++  ++ G  Y   V  +P     ++  +
Sbjct: 587 QSSVQATDSIASLKQEEDFPIYRQAIAQKELLIVITNQGKAYPISVVDIP--PKDSQACS 644

Query: 618 LINILSLN---QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           L+++L      + E++      PE++   N   ++  ++ G ++R  LS+  Q+   G  
Sbjct: 645 LLSLLPNAAQKKAEKVVGYFFLPEEK---NTHELILLSQQGRIKRLPLSELNQLGNRGLA 701

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGD 733
            +K    DE+  V   + + +I + T  G+ +RF IS   +   GRN+ G + + L  G+
Sbjct: 702 LIKFKDADELSYVCLSSVDEEIAIATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGE 761

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +         D                                                
Sbjct: 762 HLAGCVTTKAQD------------------------------------------------ 773

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                +++ +++ G+ KR      RI+     G  A   S   +   L  +     + ++
Sbjct: 774 -----YLVLITQLGYAKRLPVNSLRITKLGEIGTTALQFST--KTDNLAGIVLNQPSGKV 826

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            L++++   + +    + I  +   G  +     +E +V V
Sbjct: 827 ALITNQQRRLILSAESVGIWGKDGVGDRLVKLKSEESIVLV 867


>gi|116627478|ref|YP_820097.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
 gi|116100755|gb|ABJ65901.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
          Length = 806

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 275/872 (31%), Positives = 440/872 (50%), Gaps = 82/872 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + IE+  G ++
Sbjct: 181 MIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTEIEQLKGGKK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A +  IL
Sbjct: 241 QIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIELKKDADSQTIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K+   KA  R 
Sbjct: 301 NYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARSKFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVISLIRASENKSDAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   SE Q  AI+ L+L RLT      ++NE  +L  +I     I+     L  ++K+E
Sbjct: 395 VSYDFSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRE 454

Query: 505 LLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  +K +    RR+ +       +++    IV E+  V+++  GYVKR     + A +  
Sbjct: 455 LRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASKIE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
             G+     RD+D +  +    T   +L F++   V    +  LP    +  G+ L   +
Sbjct: 515 EVGK-----RDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTI 569

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN---RSGKIAMKL 678
            + ++ E +       + E+       +  TK G ++R +  +F              KL
Sbjct: 570 TNFSKDEEVLYAEILDDFETG----TYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKL 625

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               +++   T  Q +DI++ T+ G  +RF    + V     +VGV+ I+L   D+V ++
Sbjct: 626 KDESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGA-KAVGVKAINLKDDDKVQAV 684

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +          +   +K               + +     +       +  +ELK K  
Sbjct: 685 FVANTQSFYLLTQRASLKR--------------VATSDIPRAKRAGRGLQVLRELKTKPH 730

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LVS 857
            + T                              ++       +   PV +  QI+ +++
Sbjct: 731 RVFTAG-------------------------PVFTENAGAEIDLLATPVEETPQILFVIA 765

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             G    V ++ + ++ R + G  I   A  E
Sbjct: 766 TTGETAEVDLSLLNLSERTSNGSFIEGLADKE 797



 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 95/282 (33%), Gaps = 33/282 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG------NVRRNKLSDFIQI----NRSGKIAMKLDS 680
           T I+    +E++        A   G      NV + +L D  +      RS   A     
Sbjct: 418 TDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRELRDIKKKFGNDRRSELQAETKTI 477

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---- 736
             EI +     +E   +  T+ G   R            N+  +  +     D +I    
Sbjct: 478 --EIDTASLIVEEETYVSITRGGYVKRTS------PRSFNASKIEEVGKRDDDDLILVQQ 529

Query: 737 ----SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  ++    A+   R  +       + L    ++ IT+   D  V      +  + 
Sbjct: 530 AKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTITNFSKDEEVLYAEILDDFET 589

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   L  ++ G  KR    +F    R+ K          +E   +V V P+  +D 
Sbjct: 590 -----GTYLATTKLGQIKRFERKEFTPW-RTYKSKSVKYGKLKDESDVIVTVTPIQLDD- 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           I++++ KG  +R   +E+ +      GV   +   D++V +V
Sbjct: 643 IMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDKVQAV 684


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 310/961 (32%), Positives = 484/961 (50%), Gaps = 102/961 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  ++    ++  I   SI++ M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNVNI--PKDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +DGC+A I+N +I    LM  I+GPD PTG +++G   + +A
Sbjct: 179 GIAVGLATNIPPHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILIGEKALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y  G G + +R  ++IEK   DR  IV+ E PY+ NK+ ML+ I+E+  +K+    +  I
Sbjct: 239 YEKGEGRVTLRAKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSI 298

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIELK+ A    A+ +L  L++ T LQ   S NMVA+   KP+   
Sbjct: 299 YDIRDESDRNGIRAVIELKKSADMEEAERVLKYLFKKTELQCNLSFNMVAIAEGKPKTLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  +++V+ RRTK  L  A+ R H++ G   A+  +DE+++ IR S + + +
Sbjct: 359 LKSILKYYVEHQKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L                           G    S  Q  AI+EL L +LTGL     
Sbjct: 419 EENL--------------------------VGKFGFSREQAEAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
             E   L   I     IL+S   L  +IK+EL  VK+     RRT I+  +    ++ ED
Sbjct: 453 EKEYRELQRRINALTKILNSEKELFKVIKKELNEVKENYGDERRTNIIHDDEKAKIDIED 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV E++V+TVS+ GY+KRV    Y   +R       +  R+ DF   +   +T  +++ 
Sbjct: 513 IIVDENVVITVSNDGYIKRVSEKYY---KRINPKIEDIEYREGDFNKFILEGNTKDNLIM 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ ++  +P    + +GK L  ++     E+   I  +  DE + N  +  F 
Sbjct: 570 FTDAGNLYQLRIVNIPEMKWKEKGKRLDELIKTLDLEKEKFIEFYVIDELNSNKNFFFF- 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRF 708
           T  G +++  L D  + N S  +A+KL   ++++ V+      +E  I + +K G  + F
Sbjct: 629 TNRGMIKKTSL-DKFKTNYSKLLALKLKENEKLIDVKLNYNNRKEQYIKIQSKNG--LEF 685

Query: 709 PISAIR-VFAGRNSVGVRGISLAKGDQV-------------------------------- 735
            +S  R     RN +G +  +L+  D+V                                
Sbjct: 686 TVSEPRIENNDRNVMGNQIFNLSSQDEVKNICYTDEFNIKNFAVNINSKGKIKISKKINY 745

Query: 736 ----------ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                     +S  ++     +      Y+        +   +  +    + + + E  I
Sbjct: 746 KNFKGCYANSLSNIVIFGNKGNVFLFPAYLIENIDNGLIKLSNLID----EFNENEEDII 801

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S     E   K  F   +SE+G+ K+T   +F       KG +       N+   L+ V 
Sbjct: 802 SIFSISEFDDKSSFYF-ISEEGYVKKTMLSEFNGMYSYTKGYKL-----KNKDDKLINVL 855

Query: 846 PVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             ++     I+L++ K   IR   N I    +   GV   S  +D++V+  E I + + +
Sbjct: 856 LNDNTFKTDILLITKKDMRIRFESNSINPMGKIASGVTGISLNEDDKVIFGEFIYQEDNI 915

Query: 904 D 904
           D
Sbjct: 916 D 916



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 10/175 (5%)

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDE 640
            ++ ++++ F + G V+    + +           L N++       E I +I    E +
Sbjct: 753 ANSLSNIVIFGNKGNVFLFPAYLIENIDNGL--IKLSNLIDEFNENEEDIISIFSISEFD 810

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILL 698
              +     F ++ G V++  LS+F  +    K     +  D++++V         DILL
Sbjct: 811 ---DKSSFYFISEEGYVKKTMLSEFNGMYSYTKGYKLKNKDDKLINVLLNDNTFKTDILL 867

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            TK    +RF  ++I     + + GV GISL + D+VI    +   D     +IC
Sbjct: 868 ITKKDMRIRFESNSINPMG-KIASGVTGISLNEDDKVIFGEFIYQEDNIDKIKIC 921


>gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 956

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 301/949 (31%), Positives = 478/949 (50%), Gaps = 90/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP VL A+YPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ D++   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGIRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +LK +V  ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKSMLKYYVEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+++                             +++Q  AILEL L +LTGL     
Sbjct: 418 RENLIEK--------------------------FSFTDIQAEAILELMLYKLTGLEVVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   I +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+
Sbjct: 452 EKEYKELEKLINKLTKILKSEKELLKVIKKELIEVKETYNDKRRTAIIEDDEKAKIDVEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++  
Sbjct: 512 IIVEEDVVLTLSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I       +  +  +   ++F
Sbjct: 569 VTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFTAQKD---MLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  +A+KL   + ++    V+   +E    + T+ G    
Sbjct: 626 ITDSGYIKKTTL-DKFNTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQ 761
               ++     RN +G +   +   D +  +    + +          E +  +  +   
Sbjct: 685 IEEPSLEPV-DRNIIGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDN 743

Query: 762 RRLIS--GDTEEITSLKNDSSVEGNISEERCQELK------------------------- 794
           +  IS   D+ +   L +D      I     Q +K                         
Sbjct: 744 KSHISLFTDSSKTLVLFDDEGKAYYIPAFMLQSIKEEGVNISAFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            ++  I   SEKG  KRT   + +I   S +  +       ++   LV++      +Q  
Sbjct: 804 EEDISIYFSSEKGLIKRTLLGELKIEGNSTQVYKF-----KHKDDKLVSILIKEHEEQKN 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I+++++K  +IR     +    +   GV   S    ++V+    I E++
Sbjct: 859 ILIITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILALIIDEND 907



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+ T ++ F   G  Y    + L   S +  G  +        G++I
Sbjct: 740 LKDNKSHISLFTDSSKT-LVLFDDEGKAYYIPAFMLQ--SIKEEGVNISAF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           + +           ++ + F+++ G ++R  L +      S ++       D+++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFSSEKGLIKRTLLGELKIEGNSTQVYKFKHKDDKLVSILIK 851

Query: 691 TQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             E    IL+ T+    +RF   A+     + + GV GISL   D+VI   I+   D   
Sbjct: 852 EHEEQKNILIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILALIIDENDTRK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKAKDK 920


>gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall]
 gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
 gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. Hall]
          Length = 956

 Score =  541 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 303/949 (31%), Positives = 478/949 (50%), Gaps = 90/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ DVI   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGIRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+ +V  ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKAMLEYYVEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM++                             ++VQ  AILEL L +LTGL     
Sbjct: 418 RENLMEK--------------------------FSFTDVQAEAILELMLYKLTGLEIVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
             E   L   I +   IL+S   LL +IK+EL+ VK+  +  RRT I+E       + E+
Sbjct: 452 EKEYKELEKLINKLKKILNSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++  
Sbjct: 512 IIVEEDVVLTLSNEGFAKRISLKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I       +  +  +   ++F
Sbjct: 569 VTKEGNMYQIKVINIPEFKWKEKGVRLDEIIKTIDLSETIMEAFSIEDFTAQKD---MLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  +A+KL   + ++  +      +E    + T+ G    
Sbjct: 626 ITDSGYIKKTTL-DKFNTNYTKIMALKLKKGEFLVKADLVDRTREEKFFNIKTQKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQ 761
               ++     RN +G +   +   D +  +    + +          E +  +  +   
Sbjct: 685 IEEPSLEPV-DRNIIGYKLFDILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDN 743

Query: 762 RRLIS--GDTEEITSLKNDSSVEGNISEERCQELK------------------------- 794
           +  IS   D+ +I  L +D      I     Q +K                         
Sbjct: 744 KSHISLFTDSSKILVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            ++  I   SEKG  KRT   + +I   S +  +       ++   LV++      +Q  
Sbjct: 804 EEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKF-----KHKEDKLVSILIKEHGEQKN 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           I+++++K  +IR     +    +   GV   S    ++V+    I E++
Sbjct: 859 ILIITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+   ++ F   G  Y    + L   S +  G  +        G++I
Sbjct: 740 LKDNKSHISLFTDSSK-ILVLFDDEGKAYYIPAFMLQ--SIKEEGINISAF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           + +           ++ + F+++ G ++R  LS+      S ++       D+++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIK 851

Query: 691 TQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                  IL+ T+    +RF   A+     + + GV GISL   D+VI  +I+   D   
Sbjct: 852 EHGEQKNILIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILASIIDENDTRK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKAKDK 920


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score =  541 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 301/956 (31%), Positives = 490/956 (51%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I+    ++  I   SI++ M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNINI--PKDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  +L D+ K+ VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +DGC+A IDN DI    LM  I+GPD PTG +++G   + +A
Sbjct: 179 GIAVGLATNIPPHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILIGEKALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y  G G + +R  ++IEK   DR  IV+TE PY+ NK+ ML+ I+E+  +K+    +  I
Sbjct: 239 YEKGEGRVTLRAKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALDAI 298

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIELK+ A+   A+ +L  L++ T LQ   S NMVA+   KP+   
Sbjct: 299 SDIRDESDRNGIRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIADGKPKTLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  +++VV+RRTK  L  A  R H++ G   A+  +DE+++ IR S + + +
Sbjct: 359 LKAILKYYVEHQKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             S  Q  AI+EL L +LTGL     
Sbjct: 419 EENLVNK--------------------------FGFSREQAEAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
             E   L   I     IL+S   L  +IK+EL  VK+     RRT I+  +    ++ E+
Sbjct: 453 EKEYKELQRRINALTKILNSEKELFKVIKKELNEVKENYGDERRTNIIHDDEKAKIDIEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+++T+S+ GY+KRV    Y   +R       +  R+ DF   +   +T  S++ 
Sbjct: 513 LILDEDVIITISNEGYIKRVSEKYY---KRINPKVEDIEYREGDFNKAILEGNTKYSLII 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ ++  +     + +G+ L N++     E+   ++ F   E   ++   +F 
Sbjct: 570 FTDEGNLYQLRIVNIAEMKWKEKGERLDNLIKTLDLEK-EKLINFYVIEELNSHKNFIFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQCVRF 708
           +  G ++++ L D  + N S  +A+KL   +++++V+      +E  I + TK G  ++F
Sbjct: 629 SDRGMMKKSSL-DKFKTNYSKLLALKLKENEKLINVKLADNNRKEQYIKVQTKNG--LKF 685

Query: 709 PISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADY------------------- 748
            +   R+  + RN +G +  +L+  D+V  ++     +                      
Sbjct: 686 TVGEPRLENSDRNVMGNQLFNLSAEDKVKEISYTDEFEIKNFAVNINNKGKIKVSKKVNY 745

Query: 749 ------------------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                             D+   ++        + +   +    +   +  E +I     
Sbjct: 746 KNFKGCYANSLSNIIIFGDKGSVFLLPAYLIENIDNNGVKLSNLIDEFNENEESIVNIFA 805

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND- 849
                 E+    +SE G+ K+T   +F+ +    KG +       ++   L+ V   ++ 
Sbjct: 806 ITEFNDEESFYFISENGYVKKTMLNEFQGNYSYTKGYKL-----KDKDDKLINVLKKDNK 860

Query: 850 -NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
               I+L++ K   IR   + I    +   GV   S ++D++V+  E I   +  D
Sbjct: 861 LEKDILLITKKDMRIRFDSDSINPMGKIASGVTGISLSEDDKVIFGEFIYLEDNDD 916



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 114/304 (37%), Gaps = 17/304 (5%)

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLS-VKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            L    K     L+  +R    IK +  + +K  +  PR    +E        + +    
Sbjct: 653 KLKENEKLINVKLADNNRKEQYIKVQTKNGLKFTVGEPR----LENSDRNVMGNQLFNLS 708

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V  + Y     +  + A     KG+  V  +           ++ ++++ F   G 
Sbjct: 709 AEDKVKEISYTDEFEIKNF-AVNINNKGKIKVSKKVNYKNFKGCYANSLSNIIIFGDKGS 767

Query: 598 VYKEKVWRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           V+    + +        G  L N++       E I  I    E     +     F +++G
Sbjct: 768 VFLLPAYLIENIDNN--GVKLSNLIDEFNENEESIVNIFAITEFNDEES---FYFISENG 822

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAI 713
            V++  L++F       K     D  D++++V       E DILL TK    +RF   +I
Sbjct: 823 YVKKTMLNEFQGNYSYTKGYKLKDKDDKLINVLKKDNKLEKDILLITKKDMRIRFDSDSI 882

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                + + GV GISL++ D+VI    +   D D D+   Y +  +    +   D+EE+ 
Sbjct: 883 NPMG-KIASGVTGISLSEDDKVIFGEFIYLEDND-DKIKVYGETKNKLEVMYEDDSEEVV 940

Query: 774 SLKN 777
            LK 
Sbjct: 941 ILKG 944


>gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
          Length = 969

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 298/936 (31%), Positives = 472/936 (50%), Gaps = 87/936 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV DG +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  R 
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILIGKNSLRSAYESGVGKVAYRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL----VREKRIVDIADLRDESDRQGY 308
            ++IEK    R  I +TE PY+ NKA +L+ I+E+       K +  I+D+RDESDR G 
Sbjct: 251 KTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNGI 310

Query: 309 RVVIELKRGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIELK+ A  D    IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V  +
Sbjct: 311 RAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKDMIRHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RR++  L  A+ R H++ G   A+  LDEV+ IIR S + + A   L+++     
Sbjct: 371 KEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEK----- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +  Q +AILEL L RLTGL       E   L   IK
Sbjct: 426 ---------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVS 543
               ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T+S
Sbjct: 465 RLEKILSNEKELLKVIKFELKEISDKYGDERKTNIIEDDAKSKIDIEELIIVEEVMITLS 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++KR+P+  Y    R       +  R+ D +  L   +T  S+L F+  GF+Y+ K 
Sbjct: 525 KDGFIKRIPVKNY---IRSNSNPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKG 581

Query: 604 WRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +P    + +G+ L  I+     + E+I  ++     ++   N    F TK G ++ + 
Sbjct: 582 INIPELKWKEKGERLDTIIKSLNLEDEKIVEVISV---DNFNPNKIFRFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAG 718
           L D  + +     A+KL  +D +L+V+   +E   + + + TKL       +  +     
Sbjct: 639 L-DKFETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPEL-ENVP 696

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD--------ADYDERICYMKHMSAQRRL------ 764
           RN + ++  +L+  D++I +      +         D +    Y        R       
Sbjct: 697 RNILPIQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSK 756

Query: 765 ---------------------ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                I     ++     +   +  I              + + 
Sbjct: 757 TLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGELEKKEKIIRISSISSYNDNLALYSF 816

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S+KG  K+T   +F++     +      +   ++    V +  +   + +I+++ KG  I
Sbjct: 817 SKKGLVKKTLLNEFKV---DTQKQFFYKLKTEDDEVISVDINNITLGN-LIIITKKGMAI 872

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R PV  +    +   GV   S  +++ V+    + +
Sbjct: 873 RFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSK 908



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 118/313 (37%), Gaps = 15/313 (4%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           D        L        D L +          + L++K +LD          + ++E+ 
Sbjct: 640 DKFETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDL----EFTIEVPELENV 695

Query: 531 DCIVREDMVVTVSHLGYVKRVPLS---VYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTH 586
              +    +  +S    +  V  S    Y     G   ++ +   +      +   +++ 
Sbjct: 696 PRNILPIQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSS 755

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            ++L FS+ G++YK   + L           +   +   + E+   I+      S  +NL
Sbjct: 756 KTLLLFSNKGYIYKIPGFLLKNIMNGD----IKLEVFTGELEKKEKIIRISSISSYNDNL 811

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQC 705
            +   +K G V++  L++F    +           DE++SV+       ++++ TK G  
Sbjct: 812 ALYSFSKKGLVKKTLLNEFKVDTQKQFFYKLKTEDDEVISVDINNITLGNLIIITKKGMA 871

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RFP+  +     + + GV GISL + D+VI  A V     D +     +   S +  LI
Sbjct: 872 IRFPVENVNSMG-KVASGVTGISLREEDEVIFGAYVSKY-LDVNGNTVIISPRSQEISLI 929

Query: 766 SGDTEEITSLKND 778
           S   E++     D
Sbjct: 930 SKANEKLNITVED 942


>gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL078PA1]
          Length = 844

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 291/891 (32%), Positives = 432/891 (48%), Gaps = 108/891 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIINDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSL 595
              V +S  G + R+  +          G      R   D +      +        +S 
Sbjct: 512 PCWVLLSATGLLARIDTAD---------GLPSDGDRATHDVIISSARTTARGDFGIITSA 562

Query: 596 GFVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +     L      A       G  L +++ L +GER   +        S     + 
Sbjct: 563 GRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL-----SGAGPSLA 617

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
             T++G V+R          +     + L + DE++       E+ ++   T+    + F
Sbjct: 618 LGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHF 674

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P SA+R   GR+  GV GI     D VI         +            + +       
Sbjct: 675 PASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK------- 724

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                               E G  K T    +    R+  G+R
Sbjct: 725 ------------------------------------EPGSIKLTPFDQYPPKGRATGGMR 748

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 749 CQRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +  A                   L+  ++ E+  LKN   V G +      E+
Sbjct: 602 RALAVTSLSGAGPSLALGTRNGIVKRVNPELLGKESWEVIGLKNGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202]
 gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA2]
 gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA1]
 gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA1]
 gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL086PA1]
 gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA1]
 gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA1]
 gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA1]
 gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA1]
 gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA1]
 gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA2]
 gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA2]
 gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 844

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 291/891 (32%), Positives = 432/891 (48%), Gaps = 108/891 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSL 595
              V +S  G + R+  +          G      R   D +      +        +S 
Sbjct: 512 PCWVLLSATGLLARIDTAD---------GLPSDGDRATHDVIISSARTTARGDFGIITSA 562

Query: 596 GFVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +     L      A       G  L +++ L +GER   +        S     + 
Sbjct: 563 GRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL-----SGAGPSLA 617

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
             T++G V+R          +     + L + DE++       E+ ++   T+    + F
Sbjct: 618 LGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHF 674

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P SA+R   GR+  GV GI     D VI         +            + +       
Sbjct: 675 PASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK------- 724

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                               E G  K T    +    R+  G+R
Sbjct: 725 ------------------------------------EPGSIKLTPFDQYPPKGRATGGMR 748

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 749 CQRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +  A                   L+  ++ E+  LKN   V G +      E+
Sbjct: 602 RALAVTSLSGAGPSLALGTRNGIVKRVNPELLGKESWEVIGLKNGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|325687507|gb|EGD29528.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK72]
          Length = 816

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 292/887 (32%), Positives = 466/887 (52%), Gaps = 83/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKI-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 408 ------------SYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSASTLEEMGK-----RDDDRLIFVSPAKTIQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + + +  E +     + E   S+       ATK G ++R +  +F     
Sbjct: 571 KEIGEHLSQTISNFDTKEEVI----YTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K A   +  D+++++     ++ ++L TK G  +RF I  + V     + GV+ 
Sbjct: 627 YKSKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGA-KAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L K D V++ A + + D+ Y      +    + +R+   D           +   N  
Sbjct: 685 INLKKDD-VLAAAFIANTDSLY-----LLTQRGSLKRMAVADIP--------VTSRANRG 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            +  +ELK K   +       FG+      F            T  ++ +E   L     
Sbjct: 731 LQVLRELKTKPHRVFAAG-PVFGEAVDFDLF------------TTEAEASEKQILQ---- 773

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                   ++S+KGT   + + ++ ++ R + G  I     DE V S
Sbjct: 774 --------VLSNKGTAYEINLADLSLSERTSNGSFISDAISDEEVFS 812


>gi|119026025|ref|YP_909870.1| DNA topoisomerase IV subunit A [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765609|dbj|BAF39788.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
          Length = 891

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 285/929 (30%), Positives = 444/929 (47%), Gaps = 129/929 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+  AA  +  D+ ++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIVGRKGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR    R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L+             
Sbjct: 377 RSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIA------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-------------------- 531
           +S   L G++  E+     +  TPRRT +++   +                         
Sbjct: 471 ASDEALDGVVIDEMDDAVAKYGTPRRTVLLDEDEEGNLTPVVAHGDDGVSANAMAAARAA 530

Query: 532 ------------------------------CIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          I  E   V +S  G + R       A  R
Sbjct: 531 ATVSSAAADVAAAAKAAKKAGDENATASALQIDDEPCAVMLSATGLIARTSED---AVER 587

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-----RGK 616
                +      +D +  +F  ST +S    +S G +    V  LP  S         G 
Sbjct: 588 WENRSASDGRAKDDQIVSMFRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGV 647

Query: 617 ALINILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
               +L + +      GER+   +  P  +     + +   T++G V+R        ++ 
Sbjct: 648 KAEELLGMTENTDPIRGERVIAAIDMPSTDDDGQLVPLALGTRNGVVKRWNRESPTTMDS 707

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              I   L   DE+L+      E+ ++  +     + F    +R   GR + G+ GI LA
Sbjct: 708 WSVID--LKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAGIRLA 764

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G    + A+V      ++       +   +  L S     + ++  DS           
Sbjct: 765 EGCSAAAFAVVPDGKVTWN-------YEEGENGLFSASGAVVLTVAGDSEA--------- 808

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAVFPVN 848
                     L  +E G  K T    +    R   G+R+    K  +   L  V  +P  
Sbjct: 809 ----------LPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLILAFVGAYP-- 856

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               +   +  G  + +P  ++R     T
Sbjct: 857 ----LHASTQSGAPVELPKPDMRRDGSGT 881



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 22/245 (8%)

Query: 681 RDEILSVETCTQENDIL--LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            DE  +      +++    + +  G   R    A+  +  R++   R    AK DQ++SM
Sbjct: 551 GDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGR----AKDDQIVSM 606

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                  +           ++    L     +   S+      E  +      +    E+
Sbjct: 607 FRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGER 666

Query: 799 FILTV---SEKGFGKRTSSYDFRISNRSGKGIR----------ATDVSKINEIGALVAVF 845
            I  +   S    G+        +  R+G   R          +  V  + +   ++A  
Sbjct: 667 VIAAIDMPSTDDDGQLVPLA---LGTRNGVVKRWNRESPTTMDSWSVIDLKDDDEVLAAA 723

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              D D+++ VS   +L+      +R   R   G+     A+     +   + + ++   
Sbjct: 724 EARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVPDGKVTWN 783

Query: 906 AESTE 910
            E  E
Sbjct: 784 YEEGE 788



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 83/283 (29%), Gaps = 39/283 (13%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +    V  +  G + R       +         +    D+I+S+   +  +   L T  
Sbjct: 563 DDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAKD-DQIVSMFRTSTRSSYGLVTSA 621

Query: 703 GQCVRFPISAIRVFAGRN----SVGVRGISLA---------KGDQVISMAIVLHADADYD 749
           G+ V   +  +   +       + GV+   L          +G++VI+   +   D D  
Sbjct: 622 GRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVIAAIDMPSTDDDGQ 681

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                +   +   +  + ++       +   ++ +       E + +++ +   ++    
Sbjct: 682 LVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDDDEVLAAAEARDEDRLVFVSTDSSL- 740

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV------------------------F 845
               + + R   R+  G+    +++     A   V                         
Sbjct: 741 LTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVPDGKVTWNYEEGENGLFSASGAVVL 800

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            V  + + +  ++ G     P+       R T GV      K 
Sbjct: 801 TVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKG 843


>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 275/780 (35%), Positives = 426/780 (54%), Gaps = 76/780 (9%)

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL +DTVDF PN+D S +EP +L AR P +L+NG  GIAVGMATNIP HN+GE+VD
Sbjct: 104 MLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNIGELVD 163

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--K 258
               +I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGRG I++RG + +E   
Sbjct: 164 VLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRTGRGRIIVRGKTEVELLD 223

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
           +   R  +++ EIPYQ NK++++EKIAELV  K +  I+D+RDESDR G R+VIELKRG+
Sbjct: 224 SKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRGS 283

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
              ++LN+LYR T+LQS FS NM+ +   +P+   L  +L+AF+ FR  VV RR ++ L+
Sbjct: 284 DPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERRARFKLS 343

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +A++R H++ G+ + + NLD V+R+I+ +P+   A   L                     
Sbjct: 344 QAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMASTGLRNE------------------ 385

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q  AIL++ L R+T L R+    E  SL  +I +  ++LSSR ++L
Sbjct: 386 --------FGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLSSRKQIL 437

Query: 499 GIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            +I+QE + +K+   TPRR+ + +     +ED D I  E+M++ VS  GYVKR+  + + 
Sbjct: 438 QLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFN 497

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RG  G+S   +R  D ++D  +   H  VL+FS  G V+  + +++P  +  A G  
Sbjct: 498 LQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTRTAAGTP 557

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+ IL L+ GERIT+I+P  E      + +++  T +G +++  L+ F  I  +G IA++
Sbjct: 558 LVQILCLSDGERITSIIPVSEFAE---DQFLLMLTMNGYIKKVSLNFFSSIRSTGIIAIQ 614

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE+  V  CT ++ + + ++ G  +      IR    RN+ G   + L +GD++ S
Sbjct: 615 LVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRALG-RNTRGSIAMRLKQGDKMAS 673

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I+  A                    I  D E+             + + + +   L  
Sbjct: 674 MDIIPAA--------------------IRKDLEKA------------LEDRQSRARNLNG 701

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV--------ND 849
            ++L VSE G GKR     FR+S  +  G+     S  +    L AVF V          
Sbjct: 702 PWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAED---HLAAVFVVGFSLTEDGES 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   +  +E   + E  
Sbjct: 759 DEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSATETETDDEEA 818


>gi|314923403|gb|EFS87234.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL001PA1]
          Length = 844

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 291/890 (32%), Positives = 426/890 (47%), Gaps = 106/890 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+PD DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E   
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERGE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I+S  + L  ++  EL  V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S    + R+  +             G      D +      +        +S G
Sbjct: 512 PCWVLLSATSLLARIDTADGLPS--------GGDRATHDVIISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +     L      A       G  L +++ L +GER   +        S     +  
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL-----SGEGPSLAL 618

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFP 709
            T++G V+R          +     + L   DE++       E+ ++   T+    + FP
Sbjct: 619 GTRNGIVKRVNPELLG---KESWEVIGLKDGDEVVGAVEMGDEDLELCFVTQGAALLHFP 675

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            SA+R   GR+  GV GI     D VI         +            + +        
Sbjct: 676 ASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK-------- 724

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                              E G  K T    +    R+  G+R 
Sbjct: 725 -----------------------------------EPGSIKLTPFDQYPPKGRATGGMRC 749

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
               K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 750 QRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +                      L+  ++ E+  LK+   V G +      E+
Sbjct: 602 RALAVTSLSGEGPSLALGTRNGIVKRVNPELLGKESWEVIGLKDGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|256832646|ref|YP_003161373.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
 gi|256686177|gb|ACV09070.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
          Length = 828

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 272/800 (34%), Positives = 395/800 (49%), Gaps = 66/800 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V +T EM+ S+L YA +VI  RA+PD RDG+KPV RRIL+ M  MG+  ++ +VK
Sbjct: 15  ERIIDVDVTAEMETSFLEYAYSVIYSRALPDARDGMKPVQRRILYMMADMGLRPDRGHVK 74

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ GEVMGK HPHG++AIYDAL R+AQ +SLR+ L++G GNFGS+D D PAA RYTE 
Sbjct: 75  CSRVVGEVMGKLHPHGDSAIYDALVRLAQSFSLRVPLVDGHGNFGSLD-DGPAAARYTEA 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  +A  +  DL +D VDF PNYD    +P VL A  P +LVNG  GIAVGMATN+  H
Sbjct: 134 RLAASALAMTADLDEDVVDFIPNYDNRLTQPDVLPAAIPALLVNGASGIAVGMATNLAPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+     ++ +PD  LD LM  + GPD PTG  I+G  GI+ AY TGRGS   R  
Sbjct: 194 NLVEVISAARHLLAHPDATLDDLMRHVPGPDLPTGGRIVGLDGIREAYETGRGSFRTRAT 253

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
           + I   +  R  IV+TE+PY V    ++EKI E V  K++  I+++ D +DR+   ++VI
Sbjct: 254 AQITNVTSRRRGIVITELPYLVGPEKVIEKIKEGVTNKKLAGISNVTDLTDREHGLKLVI 313

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G   D +L  LYRYT L+  F +N VAL   +P    L  +++ +V  R  V+ RR
Sbjct: 314 EVKTGFDPDAVLEALYRYTPLEESFGINNVALVDGQPRTLGLRDMIQVWVNHRISVIRRR 373

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L +  +R H++ GL  A+ ++DEV+ +IR S +  TAR  LM              
Sbjct: 374 SEYRLKRRTERQHLVEGLLRAILDIDEVIDVIRTSDDSATARTRLMD------------- 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSEVQ   ILELRL RLT   R ++  E + L  +I E  +IL 
Sbjct: 421 -------------VFDLSEVQADYILELRLRRLTKFSRLELEKERDDLAAQIAELTEILG 467

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV----------------RE 536
               L  ++ QE+  V     TPRRT +V     +                         
Sbjct: 468 DERVLHRLVSQEMADVARAHGTPRRTVLVTSDGSVSTSSAQPAPRRGAPVDPASLQIADA 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R                +       D +T +   S   ++   +S G
Sbjct: 528 PCTVVLSSTGLLARTTDDSPL--------VADDQRSAHDALTSVTSTSVRGTIGALTSRG 579

Query: 597 FVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            V K +V  LP      R      G  + +++ L   ER+  ++ F E         +  
Sbjct: 580 RVIKIQVVELPAIPSVDRSVSVAAGIPVTDLVELEGTERVIALVSFAE-----QAPPLAM 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G V+R  +++          A+ L   DEI+    CT + D++  +   + +RF  
Sbjct: 635 GTAAGVVKRVAMNE--PPRADVFDAITLKEGDEIVGAAHCTDDADLVFLSSDARLLRFTA 692

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S++R   GR + G+ G+ LA G + +S +++          I   +         S    
Sbjct: 693 SSVRP-QGRAAGGMSGMKLAPGTRALSFSVISPDTEAAVVTIAGARDALDNSVGGSIKVS 751

Query: 771 EITSLKNDSSVEGNISEERC 790
                       G +   R 
Sbjct: 752 PFDLFPRKGRATGGVRAHRF 771



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 86/303 (28%), Gaps = 36/303 (11%)

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLS 663
                     +  +  +   ER+   +   E              V  T  G+V     +
Sbjct: 449 EKERDDLAAQIAELTEILGDERVLHRLVSQEMADVARAHGTPRRTVLVTSDGSV-STSSA 507

Query: 664 DFIQINRSGKIAMKLDSRDEILSVET------CTQENDILLTTKLGQCVRFPISAIRVFA 717
                  +      L   D   +V            +D  L     +     ++++   +
Sbjct: 508 QPAPRRGAPVDPASLQIADAPCTVVLSSTGLLARTTDDSPLVADDQRSAHDALTSVTSTS 567

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R ++G    +L    +VI + +V        +R   +        L+  +  E      
Sbjct: 568 VRGTIG----ALTSRGRVIKIQVVELPAIPSVDRSVSVAAGIPVTDLVELEGTERVIALV 623

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             + +                 +   +  G  KR +  +   ++       A  + + +E
Sbjct: 624 SFAEQAPP--------------LAMGTAAGVVKRVAMNEPPRAD----VFDAITLKEGDE 665

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              +V      D+  ++ +S    L+R   + +R   RA  G+     A   R +S   I
Sbjct: 666 ---IVGAAHCTDDADLVFLSSDARLLRFTASSVRPQGRAAGGMSGMKLAPGTRALSFSVI 722

Query: 898 RES 900
              
Sbjct: 723 SPD 725



 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA--GRNSVGVRGISLAKGDQVISMA 739
           D + SV + +    I   T  G+ ++  +  +       R+     GI +    ++    
Sbjct: 558 DALTSVTSTSVRGTIGALTSRGRVIKIQVVELPAIPSVDRSVSVAAGIPVTDLVELEGTE 617

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            V+   +  ++        +A         E   +   D+       E         +  
Sbjct: 618 RVIALVSFAEQAPPLAMGTAAGVVKRVAMNEPPRADVFDAITLKEGDEIVGAAHCTDDAD 677

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS-- 857
           ++ +S      R ++   R   R+  G+    ++        ++   ++ + +  +V+  
Sbjct: 678 LVFLSSDARLLRFTASSVRPQGRAAGGMSGMKLAPGTRA---LSFSVISPDTEAAVVTIA 734

Query: 858 ---------DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                      G++   P +      RAT GV      K E V
Sbjct: 735 GARDALDNSVGGSIKVSPFDLFPRKGRATGGVRAHRFLKGEDV 777


>gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
 gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
          Length = 821

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 278/785 (35%), Positives = 432/785 (55%), Gaps = 48/785 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K 
Sbjct: 5   KIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHN
Sbjct: 125 LSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R  +
Sbjct: 185 LSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IEL
Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RRT+
Sbjct: 305 KRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQ 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L++               
Sbjct: 365 YNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKE-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +  Q  AI+ L+L RLT     ++  E   L   I E   IL++ 
Sbjct: 411 ------------YNFTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + L  ++ +E+ ++K E   PRRT+I      L+++ +  +  ED+VV VSH GY+KR  
Sbjct: 459 NELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  ++A      G     +R++D+   +   +T + +  F++LG +    +  +     +
Sbjct: 519 IRSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWK 573

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQIN 669
             G+ +   + L   E I   M F   +       ++  T  G V++   +D+    +  
Sbjct: 574 DTGEHISQTIGLADNEEIIKAMIF---DKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYK 630

Query: 670 RSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    ++++V   E   +   +L  ++ G  VR+ ++ + V   R + GVR 
Sbjct: 631 SHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTGIRTA-GVRA 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV    +V          I  +    A + +   + E     +    V   + 
Sbjct: 690 INLKDDDQVADQILVKDGQD-----IAVITQRGAFKEMPVDEIEVGARARRGELVLRRLK 744

Query: 787 EERCQ 791
               +
Sbjct: 745 SHPHE 749



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   VV  +  G ++R+ +        S      L   D  L ++     + + + T LG
Sbjct: 501 NEDVVVLVSHAGYIKRSSI---RSFKASEAEENGLREDDYPLLIQQTNTLSHLFMFTNLG 557

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADY----DERICYMK 756
             +  PI  I   A     G    + I LA  +++I   I    D             +K
Sbjct: 558 HIIYRPIHEI-ADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVK 616

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
             +          +   S+         +      E   +   +LT+S +G+  R    D
Sbjct: 617 QTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVAD 676

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
             ++     G+RA ++   +++   +    V D   I +++ +G    +PV+EI + +RA
Sbjct: 677 VPVTGIRTAGVRAINLKDDDQVADQI---LVKDGQDIAVITQRGAFKEMPVDEIEVGARA 733

Query: 877 TKGVVIFS 884
            +G ++  
Sbjct: 734 RRGELVLR 741



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 26/241 (10%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL+   ++    T   E+ ++L +  G   R  I + +      
Sbjct: 474 KEFGNPRRTKIENHVEKLEIDTKV----TVANEDVVVLVSHAGYIKRSSIRSFKASEAEE 529

Query: 721 SVGVRGISLAKGDQ--------VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +       L + D          +S   +         R  +    +  +      ++ I
Sbjct: 530 NG------LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTI 583

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR-ATD 831
               N+  ++  I ++  Q        I+  +  G  K+T+  D++  +R       A  
Sbjct: 584 GLADNEEIIKAMIFDKLDQ-----PGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIK 638

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +    ++  +    P N+N  ++ +S +G  +R  V ++ +    T GV   +   D++V
Sbjct: 639 LRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQV 698

Query: 892 V 892
            
Sbjct: 699 A 699



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 66/168 (39%), Gaps = 3/168 (1%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
             +++++  +       ++T+S  GY  R  ++          G   + ++D+D V D  
Sbjct: 643 AQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQI 702

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V     +   +  G   +  V  + +G+   RG+ ++  L  +  E    +   P+ + 
Sbjct: 703 LVKDGQDIAVITQRGAFKEMPVDEIEVGARARRGELVLRRLKSHPHEIADFLAYDPDYQG 762

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           ++  +    A +      + LS    I  +G   +  D++ E + +  
Sbjct: 763 AFEAITNRPAFQDIMATDHHLS---SIKSNGTFVIDTDTQGEPVKLRL 807


>gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 795

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 302/814 (37%), Positives = 468/814 (57%), Gaps = 40/814 (4%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL K +++L+ D+  DTV F
Sbjct: 61  YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             NYD S  EP  L    PN+LVNG  GIAVGMAT+IP HNL EVV    A IDN DI +
Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180

Query: 214 DALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D +++  I GPDFPTGA++   + ++  Y TGRGS++IR     E+     ++ VVTEIP
Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKK-HDRFVVTEIP 239

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IELK+ A+ DV+L++LY+YT+
Sbjct: 240 YQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYTA 299

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ +  NK   R H+L  L I
Sbjct: 300 LQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALHI 359

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+D+V+ II+ S   E A+ +L  +                              E 
Sbjct: 360 ALDNVDDVINIIKNSKTSEEAKIQLTNK--------------------------YNFDEE 393

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AIL++RL RL GL RD I  E+ ++   +     +++++     ++K +L  + D+ 
Sbjct: 394 QNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKF 453

Query: 513 DTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
              RRT  I E L+++EDE+ I     ++ +S  GY++R+    +R Q+RGG+G   V  
Sbjct: 454 GDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGV-SVNA 512

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERI 630
              D +    +      VLFF++ G VY+ K++ +   S  ARG  ++N L+ L   ++I
Sbjct: 513 EPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKI 572

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           T I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+GK A+ L   D+++SV   
Sbjct: 573 TAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFAT 630

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM--AIVLHADADY 748
           T ++ I +  + G+ +R   S +   + R   GVR + L   D V+    +  L      
Sbjct: 631 TGQDTIFIANESGKVIRIKESVVNPQS-RVGSGVRALKLETNDVVVGAISSFKLTHITTV 689

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             +  + K      R+   + + I  +  +       +    +E  L    IL +S  G 
Sbjct: 690 SNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDL----ILIISSDGN 745

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +T   +    +R+  G++A  ++   EI A+ 
Sbjct: 746 LIKTKVSNIPSLSRNASGVKAIRLADNQEINAIT 779


>gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 895

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 284/933 (30%), Positives = 452/933 (48%), Gaps = 133/933 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +  ++G++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIVGRNGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+ + D +DR    R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL ++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLLKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+ +L+             
Sbjct: 377 RSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTKLIA------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++ +E + L   I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELESERDDLKQRIEELDRIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           +S   L  ++  E+        TPRRT +++   D                         
Sbjct: 471 ASAEALDNVVISEMDEAVATYGTPRRTVLLDEDADGKLVPVVAHGDDGVSASAMAAARAA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          I  E   V +S  G + R       A  R
Sbjct: 531 ATVSSAAADVAAAAKAATKAGEDNAAAVALQIDDEPCAVMLSATGLIARTSED---ALER 587

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-----RGK 616
                S      +D +  +F  +T +S    +S G +    V  LP+ S         G 
Sbjct: 588 WENRSSADKRVRDDQIISIFPTTTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGV 647

Query: 617 ALINILSLNQ------GERITTIMPFPEDESSWNNLY----VVFATKHGNVRRNKLSDFI 666
               ++ + +      GER+   +  P  + S ++      +   T++G ++R       
Sbjct: 648 HAEELIGMTENTDPIRGERVIAAIAMPTADDSGDHAAEPAPLALGTRNGVIKRWNRESPT 707

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            ++    I   L   DE+L+      E+ ++  +     + F    +R   GR + G+ G
Sbjct: 708 TMDSWSIID--LKDDDEVLAAAEARDEDRLVFVSTDSSLLTFDAKNVRP-QGRTAGGMAG 764

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+G  V + A++      ++       +      L S     + ++  DS       
Sbjct: 765 IRLAEGCSVAAFAVIPANKVAWN-------YEEGDNGLFSASGAVVLTVAGDSEA----- 812

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAV 844
                         L  +E G  K T    +    R   G+R+    K  +   L  V  
Sbjct: 813 --------------LPGTENGSAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLILAFVGT 858

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           +PV+ +      ++ G  + +P  ++R     T
Sbjct: 859 YPVHAS------TEGGAGVELPKPDMRRDGSGT 885



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 77/272 (28%), Gaps = 42/272 (15%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           GE     +    D+        V  +  G + R       +         ++   D+I+S
Sbjct: 551 GEDNAAAVALQIDDE----PCAVMLSATGLIARTSEDALERWENRSSADKRVRD-DQIIS 605

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +   T  +   L T  G+ +                            V+ + +V     
Sbjct: 606 IFPTTTRSSYGLITSAGRLIVAH-------------------------VVELPVVSADGP 640

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            +     + + +         +  +    +   +     + +   +   +   +   +  
Sbjct: 641 LHVTGGVHAEELIGMT-----ENTDPIRGERVIAAIAMPTADDSGDHAAEPAPLALGTRN 695

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  KR +       +         D+   +E   ++A     D D+++ VS   +L+   
Sbjct: 696 GVIKRWNRESPTTMD----SWSIIDLKDDDE---VLAAAEARDEDRLVFVSTDSSLLTFD 748

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              +R   R   G+     A+   V +   I 
Sbjct: 749 AKNVRPQGRTAGGMAGIRLAEGCSVAAFAVIP 780


>gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
 gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
          Length = 821

 Score =  539 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 274/739 (37%), Positives = 421/739 (56%), Gaps = 43/739 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K 
Sbjct: 5   KIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHN
Sbjct: 125 LSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R  +
Sbjct: 185 LSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IEL
Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RRT+
Sbjct: 305 KRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQ 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L++               
Sbjct: 365 YNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKE-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +  Q  AI+ L+L RLT     ++  E   L   I E   IL++ 
Sbjct: 411 ------------YNFTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + L  ++ +E+ ++K E   PRRT+I      L+++ +  +  ED+VV VSH GY+KR  
Sbjct: 459 NELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  ++A      G     +R++D+   +   +T + +  F++LG +    +  +     +
Sbjct: 519 IRSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWK 573

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQIN 669
             G+ +   + L   E I   M F   +       ++  T  G V++   +D+    +  
Sbjct: 574 DTGEHISQTIGLADNEEIIKAMIF---DKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYK 630

Query: 670 RSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    ++++V   E   +   +L  ++ G  VR+ ++ + V   R + GVR 
Sbjct: 631 SHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTGIRTA-GVRA 689

Query: 727 ISLAKGDQVISMAIVLHAD 745
           I+L   DQV    +V    
Sbjct: 690 INLKDDDQVADQILVKDGQ 708



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 91/248 (36%), Gaps = 14/248 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   VV  +  G ++R+ +        S      L   D  L ++     + + + T LG
Sbjct: 501 NEDVVVLVSHAGYIKRSSI---RSFKASEAEENGLREDDYPLLIQQTNTLSHLFMFTNLG 557

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADY----DERICYMK 756
             +  PI  I   A     G    + I LA  +++I   I    D             +K
Sbjct: 558 HIIYRPIHEI-ADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVK 616

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
             +          +   S+         +      E   +   +LT+S +G+  R    D
Sbjct: 617 QTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVAD 676

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
             ++     G+RA ++   +++   +    V D   I +++ +G    +PV+EI + +RA
Sbjct: 677 VPVTGIRTAGVRAINLKDDDQVADQI---LVKDGQNIAVITQRGAFKAMPVDEIEVGARA 733

Query: 877 TKGVVIFS 884
            +G ++  
Sbjct: 734 RRGELVLR 741



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 26/241 (10%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL+   ++    T   E+ ++L +  G   R  I + +      
Sbjct: 474 KEFGNPRRTKIENHVEKLEIDTKV----TVANEDVVVLVSHAGYIKRSSIRSFKASEAEE 529

Query: 721 SVGVRGISLAKGDQ--------VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +       L + D          +S   +         R  +    +  +      ++ I
Sbjct: 530 NG------LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTI 583

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR-ATD 831
               N+  ++  I ++  Q        I+  +  G  K+T+  D++  +R       A  
Sbjct: 584 GLADNEEIIKAMIFDKLDQ-----PGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIK 638

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +    ++  +    P N+N  ++ +S +G  +R  V ++ +    T GV   +   D++V
Sbjct: 639 LRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQV 698

Query: 892 V 892
            
Sbjct: 699 A 699



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 66/168 (39%), Gaps = 3/168 (1%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
             +++++  +       ++T+S  GY  R  ++          G   + ++D+D V D  
Sbjct: 643 AQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQI 702

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V    ++   +  G      V  + +G+   RG+ ++  L  +  E    +   P+ + 
Sbjct: 703 LVKDGQNIAVITQRGAFKAMPVDEIEVGARARRGELVLRRLKSHPHEIADFLAYDPDYQG 762

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           ++  +    A +      + LS    I  +G   +  D++ E + +  
Sbjct: 763 AFETITNRPAFQDIMATDHHLS---SIKSNGTFVIDTDTQGEPVKLRM 807


>gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
          Length = 844

 Score =  539 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 291/891 (32%), Positives = 432/891 (48%), Gaps = 108/891 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSL 595
              V +S  G + R+  +          G      R   D +      +        +S 
Sbjct: 512 PCWVLLSATGLLARIDTAD---------GLPSDGDRATHDVIISSARTTARGDFGIITSA 562

Query: 596 GFVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +     L      A       G  L +++ L +GER   +        S     + 
Sbjct: 563 GRLVRVHAVELASLPITATAPSVAGGTPLADLVGLKKGERALAVTSL-----SGAGPSLA 617

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
             T++G V+R          +     + L + DE++       E+ ++   T+    + F
Sbjct: 618 LGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHF 674

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P SA+R   GR+  GV GI     D VI         +            + +       
Sbjct: 675 PASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK------- 724

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                               E G  K T    +    R+  G+R
Sbjct: 725 ------------------------------------EPGSIKLTPFDQYPPKGRATGGMR 748

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 749 CQRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLKKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +  A                   L+  ++ E+  LKN   V G +      E+
Sbjct: 602 RALAVTSLSGAGPSLALGTRNGIVKRVNPELLGKESWEVIGLKNGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|56807930|ref|ZP_00365752.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 759

 Score =  539 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 264/752 (35%), Positives = 409/752 (54%), Gaps = 44/752 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +       +++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLEEVGK-----RDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN- 669
           +  G+ L   + +    E I     + +  +S++    V  T++G ++R    +      
Sbjct: 571 KDIGEHLSQTISNFATEEEIL----YADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRT 626

Query: 670 ---RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +S K     D +D ++++     E+ +LL TK G  +RF    +    G  S GV+G
Sbjct: 627 YKSKSTKYVKLKDDKDRVVTLSPVIMED-LLLVTKNGYALRFSSQEV-PIQGLKSAGVKG 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           I+L   D + S   V         +   +K M
Sbjct: 685 INLKNDDSLASAFAVTSNSFFVLTQRGSLKRM 716



 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 85/531 (16%), Positives = 187/531 (35%), Gaps = 42/531 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRTEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D+      +  +  +++Q      +         +  ++     L   I 
Sbjct: 295 GLRIAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQ---KILSSYIS 351

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---EDEDCIVREDMVVT- 541
              DI+  RS+      ++ L + +     R   I++ ++ +    D     +E++ V+ 
Sbjct: 352 HRKDIIIERSKFDKAKAEKRLHIVE--GLIRVLSILDEIIALIRSSDNKADAKENLKVSY 409

Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR                 D +T L                 +Y 
Sbjct: 410 DFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTL--------SAIIGDEATMYN 461

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                L     +       N   L++ +  + I+              V  T+ G ++R 
Sbjct: 462 VMKRELREVKKK-----FAN-PRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                   N S    +     DE++ V+       +LL T LG  +  PI  +       
Sbjct: 516 S---PRSFNASSLEEVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDL-RWK 571

Query: 721 SVG---VRGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +G    + I + A  ++++   IV   D         +      +R    +     + K
Sbjct: 572 DIGEHLSQTISNFATEEEILYADIVTSFDQG---LYVAVTQNGFIKRFDRKELSPWRTYK 628

Query: 777 NDSSVEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + S+    + +++ + + L     + +L V++ G+  R SS +  I      G++  ++ 
Sbjct: 629 SKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLK 688

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +   +L + F V  N    +++ +G+L R+ V++I   SRA +G+++  
Sbjct: 689 NDD---SLASAFAVTSN-SFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLR 735


>gi|329946868|ref|ZP_08294280.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526679|gb|EGF53692.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 850

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 281/879 (31%), Positives = 423/879 (48%), Gaps = 96/879 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
             +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG+
Sbjct: 7   TQAPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMGL 66

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D P
Sbjct: 67  RPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DGP 125

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG  GIAVG
Sbjct: 126 AAPRYTEARLAASALTLTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAVG 185

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY  GR
Sbjct: 186 MATNMPPHNLVEVVAAARHLLTHPEASLEELMAFVPGPDLPAGGMIVGLDGIREAYRVGR 245

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD- 304
           G  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +D 
Sbjct: 246 GKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIIARIKEAVGSKKLQGITDVADLTDR 305

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L+ FV  
Sbjct: 306 RHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLEVFVRH 365

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RRT++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ     
Sbjct: 366 RLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARSRLMQ----- 420

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E Q   ILEL+L RLT     ++  E + L  EI
Sbjct: 421 ---------------------VFDLTEPQASYILELQLRRLTKFSVIELEKERDELAREI 459

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM----------------- 527
           +    IL+    L  ++ +EL +V ++  T RRT ++E   +                  
Sbjct: 460 EALEAILADEVLLRRVVSRELAAVAEQFGTSRRTVLLETSGERVTSSASVAPPEDDASGA 519

Query: 528 -----------------------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                                       +  +   V +S  G V R P +   A R GG+
Sbjct: 520 TGGSTVKQAKASAEPMTLMPGSSPVPLTVPDDPCRVMLSATGLVARTPGAEPVA-RTGGR 578

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKAL 618
                  R  D +T     +    +   +  G +    V               A    +
Sbjct: 579 -------RPHDALTSQVATTARGRIGAVTDTGRLVLLDVVSTSEVPRTEEAPGLAGATQV 631

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             ++     E++  ++P      S +N  +V AT  G ++R K  D  + N      + L
Sbjct: 632 RQLVDTEPEEKVVGLVPV----GSADNPPIVLATADGVIKRVKPGDEPR-NAESWEVISL 686

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++   T    + + L T   Q +RF  + +R   GR + G+ GISL +G +VI+ 
Sbjct: 687 SDDDRVVFAGTARDTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLREGARVIAG 745

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A V   D   +  +  +    +      G + ++T L    +        R       E 
Sbjct: 746 AAV-PEDLLAEAVVVTVAGSESSLPGTGGGSVKVTPLDRYPAKGRATGGVRSHRFLRGED 804

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            ++                R     GK +   +  +  +
Sbjct: 805 ELVAA-------WVGVAPARALREGGKPVALPEADERRD 836



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 93/304 (30%), Gaps = 50/304 (16%)

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G +   +L    GER+T+       E   +      AT    V++ K S           
Sbjct: 488 GTSRRTVLLETSGERVTSSASVAPPEDDASG-----ATGGSTVKQAKASAEP-------- 534

Query: 675 AMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRN------------- 720
            M L        V     ++    + +  G   R P +      G               
Sbjct: 535 -MTLMPGSS--PVPLTVPDDPCRVMLSATGLVARTPGAEPVARTGGRRPHDALTSQVATT 591

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + G  G     G +++ + +V  ++    E    +   +  R+L+  + EE         
Sbjct: 592 ARGRIGAVTDTG-RLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEEKVVG----- 645

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              I+  +  G  KR    D     R+ +      +S  +    
Sbjct: 646 --------LVPVGSADNPPIVLATADGVIKRVKPGD---EPRNAESWEVISLSDDDR--- 691

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V      D D + LV+    L+R    ++R   R   G+   S  +  RV++   + E 
Sbjct: 692 VVFAGTARDTDFLALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLREGARVIAGAAVPED 751

Query: 901 EIVD 904
            + +
Sbjct: 752 LLAE 755



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 85/272 (31%), Gaps = 29/272 (10%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +   R+G         D + S    T    I   T  
Sbjct: 549 PDDPCRVMLSATGLVARTPGAEPVA--RTG----GRRPHDALTSQVATTARGRIGAVTDT 602

Query: 703 GQCVRFPI-SAIRVFAGRNSVGVRG-------ISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   + S   V     + G+ G       +     ++V+ +  V  AD   +  I  
Sbjct: 603 GRLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEEKVVGLVPVGSAD---NPPIVL 659

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                  +R+  GD           S+  +              F+  V+      R  +
Sbjct: 660 ATADGVIKRVKPGDEPRNAESWEVISLSDD-DRVVFAGTARDTDFLALVTSDAQLLRFQA 718

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAV----------FPVNDNDQIILVSDKGTLIR 864
              R   R   G+    + +   + A  AV            V  ++  +  +  G++  
Sbjct: 719 AKVRPQGRGAGGMAGISLREGARVIAGAAVPEDLLAEAVVVTVAGSESSLPGTGGGSVKV 778

Query: 865 VPVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
            P++      RAT GV        ++ +V+  
Sbjct: 779 TPLDRYPAKGRATGGVRSHRFLRGEDELVAAW 810


>gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 956

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 298/947 (31%), Positives = 469/947 (49%), Gaps = 86/947 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ DVI   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGIRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+ +V  ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKAMLEYYVEHQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LMQ+                             +++Q  AILEL L +LTGL     
Sbjct: 418 RENLMQK--------------------------FSFTDIQAEAILELMLYKLTGLEIVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
             E   L   I +   IL+S   LL +IK+EL+ VK+  +  RRT I+E       + E+
Sbjct: 452 EKEYKELERLINKLKKILNSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+  + KR+ L  Y    R       +  R+ DF   L   +T  ++  
Sbjct: 512 IIVEEDVVLTLSNESFAKRISLKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I         E       ++F
Sbjct: 569 VTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSI---EDFIAQKDMLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  + +KL   + ++  +      +E  + + T  G    
Sbjct: 626 ITDSGYIKKTTL-DKFNTNYTKIMVLKLKKGESLVKADLVDRTREEKFLNIKTHKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERICYMKHMSAQ 761
               +++    RN +G +   +   D +  +    + +          E +  +  +   
Sbjct: 685 VEEPSLQPV-DRNIIGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDN 743

Query: 762 RRLIS--GDTEEITSLKNDSSVEGNISEERCQELK------------------------- 794
           +  IS   D+ +   L +D      I     Q +K                         
Sbjct: 744 KSHISLFTDSSKTLVLFDDEGKAYYIPAFMLQGIKEGGINISVFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            ++  I   SEKG  KRT   + +I    G   +        +    + +    +   I+
Sbjct: 804 EEDISIYFSSEKGLIKRTLLSELKIE---GNSTQVYKFKHKEDKLVSILIKEHEEQKDIL 860

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++++K  +IR     +    +   GV   S    ++V+    I E++
Sbjct: 861 IITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++D      LF  S+ T ++ F   G  Y    + L     +  G  +        G++I
Sbjct: 740 LKDNKSHISLFTDSSKT-LVLFDDEGKAYYIPAFMLQGI--KEGGINISVF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           + +           ++ + F+++ G ++R  LS+      S ++       D+++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFSSEKGLIKRTLLSELKIEGNSTQVYKFKHKEDKLVSILIK 851

Query: 691 TQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             E    IL+ T+    +RF   A+     + + GV GISL   D+VI  +I+   D   
Sbjct: 852 EHEEQKDILIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILASIIDENDTRK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKAKDK 920


>gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA2]
 gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA3]
          Length = 844

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 290/891 (32%), Positives = 431/891 (48%), Gaps = 108/891 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +    R  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSL 595
              V +S  G + R+  +          G      R   D +      +        +S 
Sbjct: 512 PCWVLLSATGLLARIDTAD---------GLPSDGDRATHDVIISSARTTARGDFGIITSA 562

Query: 596 GFVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +     L      A       G  L +++ L +GER   +        S     + 
Sbjct: 563 GRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSL-----SGAGPSLA 617

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRF 708
             T++G V+R          +     + L + DE++       E+ ++   T+    + F
Sbjct: 618 LGTRNGIVKRVNPELLG---KESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHF 674

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P SA+R   GR+  GV GI     D VI         +            + +       
Sbjct: 675 PASAVRP-QGRSGGGVAGIKAK--DPVIFFGAAPRRGSSVVTVAASSPAAAGK------- 724

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                               E G  K T    +    R+  G+R
Sbjct: 725 ------------------------------------EPGSIKLTPFDQYPPKGRATGGMR 748

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                K    G    VF     D  +  +  G  I +P   +R      +G
Sbjct: 749 CQRFLK----GETALVFAWIGPDPAVACAASGVPIELPAPNMRRDGSGDQG 795



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-GVRG-------ISLAKGD 733
           D I+S    T   D  + T  G+ VR     +       +   V G       + L KG+
Sbjct: 542 DVIISSARTTARGDFGIITSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGE 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +  A                   L+  ++ E+  LKN   V G +      E+
Sbjct: 602 RALAVTSLSGAGPSLALGTRNGIVKRVNPELLGKESWEVIGLKNGDEVVGAV------EM 655

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGALVAVFP 846
             ++  +  V++        +   R   RSG G+                  G+  +V  
Sbjct: 656 GDEDLELCFVTQGAALLHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGS--SVVT 713

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V  +       + G++   P ++     RAT G+      K E  +    I
Sbjct: 714 VAASSPAAAGKEPGSIKLTPFDQYPPKGRATGGMRCQRFLKGETALVFAWI 764


>gi|73662712|ref|YP_301493.1| DNA topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495227|dbj|BAE18548.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 800

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 273/885 (30%), Positives = 458/885 (51%), Gaps = 92/885 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++Q W L  +LIE QGN GS+D DP AA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SRISEELLRDINKETVPFMPNYDDTTLEPMVLPARLPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY TG+G I++R    
Sbjct: 185 GEVIQATLKFIDNPDITVAQLMKYVKGPDFPTGGIIQGIDGIKKAYETGKGKIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q++VTE+PY+VNK+++++K+ EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 DEELRNGRKQLIVTEVPYEVNKSSLVKKMDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ +LN LY+ T LQ  ++ NMVA++  +P    +   + +++  + +VV +RT+Y
Sbjct: 305 KDVNSEAVLNYLYKNTDLQVAYNFNMVAISEGRPVLMGIRQFIDSYLNHQIDVVTKRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+++IR S N + A+  L+                 
Sbjct: 365 ELDHAESRMHIVEGLMKALSILDEVIKLIRASKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      ++ E + L   I    +IL   S
Sbjct: 410 -----------FDFTEAQAEAIVTLQLYRLTNTDIVQLQEEHDELKSLIGRLKNILDDHS 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +++     R + I   + +  ++ E  I  E ++++V+  GY+KR  L
Sbjct: 459 ALLNVIKEELTEIRNRFKQGRLSSIEAEISEIKIDKEVMIPSETVIMSVTKHGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A      G + + ++D D +     V+T  + L F++ G      V +L     + 
Sbjct: 519 RSYNAS-----GVNEIGVKDGDVLMKHQEVNTLDTALVFTNKGRYLFIPVHKLAEIKWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG- 672
            G+ +  I+ L++GE I       + +    + + + AT+HG ++R+ +S F     +  
Sbjct: 574 LGQHVSQIVPLDEGEFIIDAYCESDFK---PDAFYILATRHGMIKRSNVSMFKTSRFNKP 630

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +AMK+   DEI++V        I + T  G  + +    +     R + GV+ I+L   
Sbjct: 631 LVAMKVKDDDEIINVMRIDSTQLITVITNKGMSLTYSSDELSDTGLR-AAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  +   ++   ++                                              
Sbjct: 690 DFAVLTQVISANNS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR      + + R+ +GI      K +    + A     ++  
Sbjct: 704 -------ILMATQRGSLKRIGFKVLQTAKRAQRGITLLKELKKSPHRIVAADVIQPEHTT 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + SDK       + +I ++ + T G  I  T++   ++ +E  
Sbjct: 757 YTIYSDK-QQESGAIKDIHLSEQYTNGSFIVDTSEFGEIIDLEVN 800


>gi|262189909|ref|ZP_06048228.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
 gi|262034207|gb|EEY52628.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
          Length = 653

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/682 (36%), Positives = 377/682 (55%), Gaps = 90/682 (13%)

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R
Sbjct: 1   MRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR 60

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV
Sbjct: 61  IVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVV 120

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  
Sbjct: 121 TRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAA 180

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L 
Sbjct: 181 MLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLL 240

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT
Sbjct: 241 EEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVT 300

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ 
Sbjct: 301 LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRM 360

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  
Sbjct: 361 KVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE---FSKDKFIFMATGDGTVKKTS 417

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF----- 716
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S          
Sbjct: 418 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 477

Query: 717 -------------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
                               GR + GVRG+ LA GDQV+S+                   
Sbjct: 478 QPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI------------------ 519

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                              +   E  +LTV+E G+GKRTS  ++
Sbjct: 520 -----------------------------------VPKTEGDVLTVTENGYGKRTSLSEY 544

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T
Sbjct: 545 PTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNT 602

Query: 878 KGVVIFSTAKDERVVSVERIRE 899
           +GV +  T++ E VV ++RI E
Sbjct: 603 QGVTLIRTSEGESVVGLQRIDE 624



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 156/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 221 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 278

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 279 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 334

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 335 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 392

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                  ++  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 393 LPVTEFSKDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 450

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 451 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 510

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 511 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 564

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 565 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 623

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 624 EIEESELPEGEEALVENDAPVAQDDDGEQ 652


>gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
          Length = 895

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 287/933 (30%), Positives = 450/933 (48%), Gaps = 133/933 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +  ++ +DTVDF PNYD   QEP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR GI+ AY TGRG++  R 
Sbjct: 197 HNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGGVIVGRKGIREAYETGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR    R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVNHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L++            
Sbjct: 377 RSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIK------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           +S   L  ++  E+        TPRRT +++   D                         
Sbjct: 471 ASAEALDDVVIAEMDEAVATYGTPRRTVLLDEDADGRLVPVAAHGDDGVSASAVAAARAA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          I  E   V +S  G + R       A  R
Sbjct: 531 ATVSSAAADVAAAAKAAKKAGEDNAAAMALQIDDEPCAVMLSATGLIARTSED---ALER 587

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-----RGK 616
                S      +D +  +F  +T +S    +S G +    V  LP+ S         G 
Sbjct: 588 WENRSSADQRVKDDQIISIFRTTTRSSYGLITSAGRLIVAHVVELPVVSADGPLHVTGGV 647

Query: 617 ALINILSLNQ------GERITTIMPFPEDESSWNNLY----VVFATKHGNVRRNKLSDFI 666
               ++   +      GER+   +  P  + S +N      +   T++G V+R       
Sbjct: 648 HAEELIGTTENTDPIRGERVIAAIAMPSADDSGDNAVEPTPLALGTRNGVVKRWNRESPT 707

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            ++    I   L   DE+L+      E+ ++  +     + F    +R   GR + G+ G
Sbjct: 708 TMDSWSVID--LKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMAG 764

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+G    + A+V  +   ++       +   +  L S     + ++  DS       
Sbjct: 765 IRLAEGCSAAAFAVVPASKVAWN-------YEEGENGLFSASGAVVLTVAGDSEA----- 812

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAV 844
                         L  +E G  K T    +    R   G+R+    K  +   L  V  
Sbjct: 813 --------------LPGTENGSAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLVLAFVGA 858

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           +PV+ +      +  G  + +P  ++R     T
Sbjct: 859 YPVHAS------TQGGAGVELPKPDMRRDGSGT 885


>gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund
           17B]
 gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
          Length = 969

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 295/936 (31%), Positives = 474/936 (50%), Gaps = 87/936 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV +G +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  R 
Sbjct: 191 HNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILIGKNSLRSAYESGVGKVAYRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            ++IEK    R  I +TE PY+ NKA +L+ I+E+  +++    +  I+D+RDESDR G 
Sbjct: 251 KTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRNGI 310

Query: 309 RVVIELKRGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIELK+ A  D    IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V  +
Sbjct: 311 RAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKDMIRHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RR++  L  A+ R H++ G   A+  LDEV+  IR S + + A   L+++     
Sbjct: 371 KEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEK----- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +  Q +AILEL L RLTGL       E   L   IK
Sbjct: 426 ---------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVS 543
               ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T+S
Sbjct: 465 RLEKILSNEKELLKVIKFELKEISDKYGDERKTHIIEDDTKSKIDVEELIIVEEVMITLS 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++KR+P+  Y    R       +  R+ D +  L   +T  S+L F++ GF+Y+ K 
Sbjct: 525 KEGFIKRIPVKNY---IRSNSNPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQVKG 581

Query: 604 WRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +P    + +G+ L  I+     + E+I  ++     +S   N    F TK G ++ + 
Sbjct: 582 INIPELKWKEKGERLDTIIKSLNLEEEKIVEVISV---DSFNPNKIFRFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAG 718
           L D  + +     A+KL  +D +L+V+   +E   + + + TKL       +  +     
Sbjct: 639 L-DKFETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLELEFTIEVPEL-ENVP 696

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD--------ADYDERICYMKHMSAQRRL------ 764
           RN + ++  +L+  D+++ +      +         D +    Y        R       
Sbjct: 697 RNILPIQLFNLSIDDEIVEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSK 756

Query: 765 ---------------------ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                I     ++     D   +  I           +  + + 
Sbjct: 757 TLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGDLEKKEKIIRISSISSYDDDLALYSF 816

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S+KG  K+T   +F +     +      +   ++    V +  +   + +++++ KG  I
Sbjct: 817 SKKGLVKKTLLNEFSV---DTQKQFFYKLKTEDDEVISVDINNITLGN-LVIITKKGMAI 872

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R PV  +    +   GV   S  +++ V+    + +
Sbjct: 873 RFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSK 908


>gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 969

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 297/936 (31%), Positives = 471/936 (50%), Gaps = 87/936 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ Y 
Sbjct: 11  DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RYTE
Sbjct: 71  KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNIP 
Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV DG +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  R 
Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILIGKNSLRSAYESGVGKVAYRA 250

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL----VREKRIVDIADLRDESDRQGY 308
            ++IEK    R  I +TE PY+ NKA +L+ I+E+       K +  I+D+RDESDR G 
Sbjct: 251 KTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNGI 310

Query: 309 RVVIELKRGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIELK+ A  D    IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V  +
Sbjct: 311 RAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKNMIRHYVNHQ 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RR++  L  A+ R H++ G   A+  LDEV+  IR S + + A   L+++     
Sbjct: 371 KEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEK----- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +  Q +AILEL L RLTGL       E   L   IK
Sbjct: 426 ---------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIK 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVS 543
               ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T+S
Sbjct: 465 RLEKILSNEKELLKVIKFELKEISDKYGDERKTNIIEDDAKSKIDIEELIIVEEVMITLS 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++KR+P+  Y    R       +  R+ D +  L   +T  S+L F+  GF+Y+ K 
Sbjct: 525 KDGFIKRIPVKNY---IRSNSNPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKG 581

Query: 604 WRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +P    + +G+ L  I+     + E+I  ++     ++   N    F TK G ++ + 
Sbjct: 582 INIPELKWKEKGERLDTIIKSLNLEDEKIVEVISV---DNFNPNKIFRFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAG 718
           L D  + +     A+KL  +D +L+V+   +E   + + + TKL       +  +     
Sbjct: 639 L-DKFETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPEL-ENVP 696

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD--------ADYDERICYMKHMSAQRRL------ 764
           RN + ++  +L+  D++I +      +         D +    Y        R       
Sbjct: 697 RNILPIQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSK 756

Query: 765 ---------------------ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                I     ++     +   +  I              + + 
Sbjct: 757 TLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGELEKKEKIIRISSISSYDDNLALYSF 816

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S+KG  K+T   +F++     +      +   ++    V +  +   + +I+++ KG  I
Sbjct: 817 SKKGLVKKTLLNEFKL---DTQKQFFYKLKTEDDEVISVDINNITLGN-LIIITKKGMAI 872

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R PV  +    +   GV   S  +++ V+    + +
Sbjct: 873 RFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSK 908



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 118/313 (37%), Gaps = 15/313 (4%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           D        L        D L +          + L++K +LD          + ++E+ 
Sbjct: 640 DKFETSYGKLQALKLRDKDALLNVKLRDREENNDYLNIKTKLDL----EFTIEVPELENV 695

Query: 531 DCIVREDMVVTVSHLGYVKRVPLS---VYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTH 586
              +    +  +S    +  V  S    Y     G   ++ +   +      +   +++ 
Sbjct: 696 PRNILPIQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSS 755

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            ++L FS+ G++YK   + L           +   +   + E+   I+      S  +NL
Sbjct: 756 KTLLLFSNKGYIYKIPGFLLKNIMNGD----IKLEVFTGELEKKEKIIRISSISSYDDNL 811

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQC 705
            +   +K G V++  L++F    +           DE++SV+       ++++ TK G  
Sbjct: 812 ALYSFSKKGLVKKTLLNEFKLDTQKQFFYKLKTEDDEVISVDINNITLGNLIIITKKGMA 871

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RFP+  +     + + GV GISL + D+VI  A V     D +     +   S +  LI
Sbjct: 872 IRFPVENVNSMG-KVASGVTGISLREEDEVIFGAYVSKY-LDVNGNTVIISPRSQEISLI 929

Query: 766 SGDTEEITSLKND 778
           S   E++     D
Sbjct: 930 SKANEKLNITVED 942


>gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
 gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 956

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 301/952 (31%), Positives = 477/952 (50%), Gaps = 94/952 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I   D   +  I  V + + M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKI---DIPTDSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    ++ Y K ARI G+++GK+HPHG++++YDA+  +AQD++ R  LI+G GN+GS+
Sbjct: 58  HLLKAYPDRPYYKSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ KD V+   NY  S  EP VL A+YPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV+DG +A IDN DI    LM  I+GPD PTG +++G+  I +A
Sbjct: 178 GIAVGLATNIPPHNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILIGKDSILSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y +G G + +R  + IEK    R  +V+TE P++ NKA +L+ I+E+  +K+    +  I
Sbjct: 238 YESGNGRVTLRAKTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           AD+RDESDR G R VIE K+       D IL  L + T LQ     NMVA+   KPE   
Sbjct: 298 ADIRDESDRTGIRAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGKPETMG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  ++  ++EVV RRT+  L  A  R H++ G   A+  +D+++  IR S +   A
Sbjct: 358 LRTMLWHYIEHQKEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             +E+Q  AILEL L RLTGL     
Sbjct: 418 SQNLIAK--------------------------FDFTELQATAILELMLYRLTGLEITAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
             E   L   I++  +IL S   LL +IKQELL +KD+    RRT+I++   +  ++ ++
Sbjct: 452 EKEYKELSKLIRKLKNILDSERELLNVIKQELLEIKDKYADARRTQIIDDENEAKIDMDE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ GY+KRVP   Y    R       +  R+ D+   +   +T  ++L 
Sbjct: 512 LIVVEDIVITLSNEGYIKRVPQKTY---VRSNSNPQDIEYREGDYNRFIISSNTLETILV 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL---SLNQGERITTIMPFPEDESSWNNLYV 648
           F+  G +Y+ K   +P    + +G+ L  I+   +L+  ERI T +   +    +N   V
Sbjct: 569 FTDNGNMYQFKGNAIPELRWKEKGERLDTIIKGMNLDS-ERIVTALSIKDFSGPFN---V 624

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQC 705
            F T  G +++  LS F   + +  +A+KL    +++SVE      +E  + + T  G  
Sbjct: 625 QFITNKGIIKKTSLSKFAS-SYTKLMAIKLKEDQKLVSVEIFDCEREERFVQILTSQGLT 683

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                  +   + R   G    ++   D +     +         R+        +    
Sbjct: 684 FTVNEPKLD-DSDRMIQGTMLATIPAKDSIEKAEYIEIKPEIKRFRVELTSKGELKVGAK 742

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKL------------------------------ 795
             +  +     +++ +    SE     +                                
Sbjct: 743 GKENSKAVYTDSEARLIIITSEGNVLNIASNVLENVTEPFNIVNSFGEIDKSNKFIGIIN 802

Query: 796 -----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++ +I+  S++G+ K+TS  +++     G+ + +      N+   LV    + + 
Sbjct: 803 VSDFKEDSYIIFFSKRGYVKKTSLKEYQ-----GEYLCSQGYKLKNDSDELVGASLIKNE 857

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +  +LV+ KG  IRV  N++    +   GV+  S   ++ V+    I +++
Sbjct: 858 AENFVLVTQKGMAIRVNCNDVNEMGKIASGVIGISLKDEDFVIYGNTISDND 909


>gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 816

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 287/800 (35%), Positives = 413/800 (51%), Gaps = 60/800 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                + E+ I  V + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRIL+   +MG+
Sbjct: 8   TPPPGDFEERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEMGL 67

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-P 124
              + +VKCAR+ GEVMG+ HPHG+A+IYDA+ R+AQ +S+RL LI+G GNFGS+  D P
Sbjct: 68  RPERGHVKCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGNDDP 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL  A+  +++ + +DTVDF PNYDGS QEP VL + +PN+LVNG  GIAV
Sbjct: 128 PAAMRYTESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNL EVV     +I +P  DL+ LM  + GPD PTG  I+G +GI++AY +G
Sbjct: 188 GMATNMPPHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGGRIVGLSGIRDAYESG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  IR  + IE  +  R+ IVVTE+PY V    ++ KI +LV  K++  IAD++D +D
Sbjct: 248 RGTFKIRATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKDLTD 307

Query: 305 RQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+   R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +V 
Sbjct: 308 REHGLRLVIEVKNGFVPEALLEQLYKLTPMEETFGINNVALVDGQPLTLGLKELLEVYVD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  VV RR+ +   K +DR H++ GL +A+ ++DEV+ +IR S +   A+  LM+R   
Sbjct: 368 HRFTVVKRRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLMER--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE QT  IL+  L RLT   R ++  E + L  E
Sbjct: 425 -----------------------FGLSETQTAYILDTPLRRLTRFDRVELEAEQSKLLKE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG----LLDMEDEDCIVREDMV 539
           I E  +IL S  +L  ++  EL SV  +  T RRT ++E        +     +  +   
Sbjct: 462 IAELTEILESDHKLRSVVSSELGSVAKQFGTERRTVLLEAGSVPSAALAVPLEVADDPCR 521

Query: 540 VTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           V +S  G + R     P++   A R              D +      +    V   ++ 
Sbjct: 522 VLLSSTGLLARTFDLKPVTEESAAR-----------AKHDVLASAVPATARGDVGLVTTA 570

Query: 596 GFVYKEKVWRLPIGSPQ----ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           G V +  V  LP   P     + G A+   L L  GER   +    E     ++  +   
Sbjct: 571 GRVLRLPVIDLPALPPGTAALSGGAAVSEFLRLEDGERPIALTTLDE-----SSPGLALG 625

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R         +    IA  L   D ++  VE  T E D++  T   Q +R+  
Sbjct: 626 TVQGVVKRVVPEWPANKDEFEVIA--LKDGDAVVGAVELRTGEEDLVFITSDAQLLRYQA 683

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + G+ GI LA G +V+S   V  A       +       A     S    
Sbjct: 684 NQVRP-QGRPAGGMAGIKLADGARVLSFGAVDPAQDAVVLSVAAATGTLAGEEQSSWKLT 742

Query: 771 EITSLKNDSSVEGNISEERC 790
                       G +  +R 
Sbjct: 743 PFDQYPRKGRATGGVRCQRF 762



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 93/281 (33%), Gaps = 28/281 (9%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  G   +  +  P      ++   V  +  G + R    D   +        K    D 
Sbjct: 499 LEAGSVPSAALAVPL--EVADDPCRVLLSSTGLLARTF--DLKPVTEESAARAK---HDV 551

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV--GVRGI----SLAKGDQVIS 737
           + S    T   D+ L T  G+ +R P+  +       +   G   +     L  G++ I+
Sbjct: 552 LASAVPATARGDVGLVTTAGRVLRLPVIDLPALPPGTAALSGGAAVSEFLRLEDGERPIA 611

Query: 738 MAIVLHADADYDERICYMKHMSAQRR-LISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  +  +                      + D  E+ +LK+  +V G +      EL+  
Sbjct: 612 LTTLDESSPGLALGTVQGVVKRVVPEWPANKDEFEVIALKDGDAVVGAV------ELRTG 665

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ++ ++      R  +   R   R   G+    ++    + +  AV P  D   + + 
Sbjct: 666 EEDLVFITSDAQLLRYQANQVRPQGRPAGGMAGIKLADGARVLSFGAVDPAQDAVVLSVA 725

Query: 857 SDKGTL--------IRVPVNEIRIASRATKGVVIFSTAKDE 889
           +  GTL           P ++     RAT GV      + E
Sbjct: 726 AATGTLAGEEQSSWKLTPFDQYPRKGRATGGVRCQRFLRGE 766


>gi|170017458|ref|YP_001728377.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
 gi|169804315|gb|ACA82933.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
          Length = 812

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/840 (32%), Positives = 433/840 (51%), Gaps = 59/840 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++Q+W +R  LI+  GN GS+D DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSIDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG+DTVD   N+D +  EP VL +R P++L+NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQDTVDMVLNFDDTTYEPTVLPSRIPSLLINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P+    ALM  I+GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPEAPQSALMRYIKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I +  G +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TAISELKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVAGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +  +A+ IL  L++ T LQ  ++ NMVA++  +P   +L   L+AF+AFR+EVV++R+
Sbjct: 303 LNKDTNANGILTYLFKKTDLQIAYNFNMVAIHDQRPVHVSLKQALEAFIAFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ R             
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIAR------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E  +L  +I    ++++ 
Sbjct: 410 -------------FDFTQPQAEAIVTLQLYRLTNTDVTQLEEEFAALTEKINHLTEVMNE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
              L  +I+ E+ ++  +  + RR++I   + D  ++    I  ED+ V VS  GY KR 
Sbjct: 457 EMALKAVIRDEITAITQKYQSARRSQIEAEVEDLVIDKAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A  +         + D+D       ++T   +  F++ G V    V  LP    
Sbjct: 517 SIRSYKASDKD------NGLADDDLPVFEGQLNTTQHLFMFTNKGSVIYRPVHELPDSRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-- 668
           +  G+     L +    E +  ++P    E           T  G +++  LSD +    
Sbjct: 571 KDTGEHFSQELSNWRTEEYVIKVVPINTLEQGGA---FTIVTNDGFIKQTTLSDMLPKAY 627

Query: 669 NRSGKIAMKLDSRDE-ILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +A+KL + D  +++ +      + D+LL ++ G  +RF + +I     R + GV+
Sbjct: 628 KKKTSMAIKLKTDDSYVVNADYFETVGQQDVLLLSQHGVGLRFAVKSIPEIGARTA-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + +   V +      +R+  M    A + +      EIT  K  +      
Sbjct: 687 AMDLRNEDTIKAAVFVTNE----AQRVAIMADNGAFKYM---PVSEITRSKRANKGLLIF 739

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRT--------SSYDFRISNRSGKGIRATDVSKINE 837
           ++++     +    IL + +      T           D++ S R G G    DV K  E
Sbjct: 740 TQKKTVAYHVATATILNIEDTALEILTTRWQKQELQLSDYKPSQRVGNGQYVVDVKKYGE 799



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 6/222 (2%)

Query: 681 RDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD-QVISM 738
            D ++    T  +E+  +L ++ G   R  I + +     N +    + + +G       
Sbjct: 488 EDLVIDKAVTIAEEDVQVLVSRNGYYKRASIRSYKASDKDNGLADDDLPVFEGQLNTTQH 547

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +         R  +    S  +      ++E+++ + +  V   +     ++      
Sbjct: 548 LFMFTNKGSVIYRPVHELPDSRWKDTGEHFSQELSNWRTEEYVIKVVPINTLEQGGA--- 604

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
               V+  GF K+T+  D        K   A  +   +        F       ++L+S 
Sbjct: 605 -FTIVTNDGFIKQTTLSDMLPKAYKKKTSMAIKLKTDDSYVVNADYFETVGQQDVLLLSQ 663

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            G  +R  V  I      T GV       ++ + +   +   
Sbjct: 664 HGVGLRFAVKSIPEIGARTAGVKAMDLRNEDTIKAAVFVTNE 705



 Score = 46.1 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 90/248 (36%), Gaps = 18/248 (7%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  +++G  +R  +  +   ++       L   D  +          + + T  G  +  
Sbjct: 505 VLVSRNGYYKRASIRSYKASDKD----NGLADDDLPVFEGQLNTTQHLFMFTNKGSVIYR 560

Query: 709 PISAIRVFAGRNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           P+  +   +     G        +    + VI   +V     +       + +    ++ 
Sbjct: 561 PVHEL-PDSRWKDTGEHFSQELSNWRTEEYVIK--VVPINTLEQGGAFTIVTNDGFIKQT 617

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQE-----LKLKEQFILTVSEKGFGKRTSSYDFRI 819
              D       K  S      +++           + +Q +L +S+ G G R +      
Sbjct: 618 TLSDMLPKAYKKKTSMAIKLKTDDSYVVNADYFETVGQQDVLLLSQHGVGLRFAVKSIPE 677

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                 G++A D+   NE     AVF  N+  ++ +++D G    +PV+EI  + RA KG
Sbjct: 678 IGARTAGVKAMDL--RNEDTIKAAVFVTNEAQRVAIMADNGAFKYMPVSEITRSKRANKG 735

Query: 880 VVIFSTAK 887
           ++IF+  K
Sbjct: 736 LLIFTQKK 743


>gi|297626461|ref|YP_003688224.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922226|emb|CBL56796.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 820

 Score =  536 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 287/817 (35%), Positives = 423/817 (51%), Gaps = 58/817 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        ++ E+ I  V ++ EMQ SYL YA +VI  RA+PD RDGLKPV RRIL+GM
Sbjct: 1   MARTKTPPADDFEERIVDVDVSSEMQTSYLEYAYSVIYARALPDARDGLKPVQRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  +  +VKCAR+ G+VMGK HPHG++AIYDAL RM QDWS+RL L++G GNFGS+
Sbjct: 61  SEQRLTPDHPFVKCARVVGDVMGKLHPHGDSAIYDALVRMGQDWSMRLKLVDGHGNFGSL 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECRL  AA  +LD L +DTVDFRPNYDG   EP VL A +PN+LVNG  
Sbjct: 121 DAGPAA-MRYTECRLAPAAMPMLDGLHEDTVDFRPNYDGKQLEPAVLPAAFPNLLVNGAT 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP+HNLGEVV     ++ NP  ++D LM  + GPD PTG  I+G  GI+ A
Sbjct: 180 GIAVGMATNIPSHNLGEVVAALKYLLKNPGAEVDELMRYVPGPDLPTGGKIVGLDGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG    R  + IE+ S  R  IV+TE+P+ V    ++++I  LVR K+I  I+D++
Sbjct: 240 YATGRGIFRTRATARIEQVSPRRRGIVITELPFAVGPEKIIDQIKVLVRSKKITGISDVK 299

Query: 301 DESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D     R+VIE+K G + + +L QLY++T L+  F +N VAL   +P   TL  +L+
Sbjct: 300 DLTDLTYGLRLVIEVKNGINPEALLAQLYKHTKLEDSFGINAVALVDGQPRTMTLKEMLQ 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV++RR K+ L KA+DR H++ GL +A+ ++D+V+ IIR S +   AR+ LM+
Sbjct: 360 VYLDHRLEVILRRAKFQLGKAQDRLHLVEGLLLAMIDIDDVIAIIRSSDDVPEARQRLME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                     T  L E+Q   IL+++L RLT L R ++  E + 
Sbjct: 420 --------------------------TFELDEIQANYILDMQLRRLTKLSRIELETERDE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI----VR 535
           L   I E  +++         +  +L  +     +PRRT ++EG                
Sbjct: 454 LRRRITELTELIDDPDLQRDTVASQLSEMAATYGSPRRTVLLEGSGAAAALPAQPLEIPD 513

Query: 536 EDMVVTVSHLGYVKRV--PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           +   V +S  G + R+  P            G  G      D V     V+ H      +
Sbjct: 514 DPCWVMMSSTGLMARMTRPADGDDPGHLPTSGPRGR----HDVVVAAIAVTAHAQFGVLT 569

Query: 594 SLGFVYKEKVWRLPI-----GSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLY 647
           S G + K +   LP       +P  RG + + ++L L   ER   +    ED +      
Sbjct: 570 SHGRLVKAEAIDLPEVVGTANAPSLRGGSRVEDLLVLTDAERAVGLTTLAEDSAG----- 624

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCV 706
           +   T+ G V+R        +++     ++L+  DE++  VE     ++++  T   Q +
Sbjct: 625 LALGTRRGVVKRVNPE---VLSKDEWDVIRLEDNDEVVGGVELTDPSDELVFVTSDAQLL 681

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            F    +R   GR+  GV G+ L  G  V+   +    DA     +  +   S+      
Sbjct: 682 HFAADLVRP-QGRSGGGVAGVRLTGGSSVVWFGVSPATDA----VVVTLSGTSSMLPGAQ 736

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             + ++T  ++           RC      E  +L  
Sbjct: 737 TGSVKVTPFEDYPPKGRATGGVRCHRFLKGEDGLLLA 773



 Score = 46.1 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 71/214 (33%), Gaps = 29/214 (13%)

Query: 695 DILLTTKLGQCVRFPISA-IRVFAGRNSVGVRGIS-------LAKGDQVISMAIVLHADA 746
              + T  G+ V+        V    N+  +RG S       L   ++ + +  +    A
Sbjct: 564 QFGVLTSHGRLVKAEAIDLPEVVGTANAPSLRGGSRVEDLLVLTDAERAVGLTTLAEDSA 623

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                            ++S D  ++  L+++  V G +      EL      ++ V+  
Sbjct: 624 GLALGTRRGVVKRVNPEVLSKDEWDVIRLEDNDEVVGGV------ELTDPSDELVFVTSD 677

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT----- 861
                 ++   R   RSG G+    ++     G+ V  F V+     ++V+  GT     
Sbjct: 678 AQLLHFAADLVRPQGRSGGGVAGVRLT----GGSSVVWFGVSPATDAVVVTLSGTSSMLP 733

Query: 862 ------LIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 +   P  +     RAT GV      K E
Sbjct: 734 GAQTGSVKVTPFEDYPPKGRATGGVRCHRFLKGE 767



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYD---FRISNRSGKGIRA---------TDVSKINEIGAL 841
           ++++  +LT +E+  G  T + D     +  R G   R           DV ++ +   +
Sbjct: 599 RVEDLLVLTDAERAVGLTTLAEDSAGLALGTRRGVVKRVNPEVLSKDEWDVIRLEDNDEV 658

Query: 842 VAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           V    + D +D+++ V+    L+    + +R   R+  GV          VV
Sbjct: 659 VGGVELTDPSDELVFVTSDAQLLHFAADLVRPQGRSGGGVAGVRLTGGSSVV 710


>gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
 gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
          Length = 821

 Score =  536 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 279/785 (35%), Positives = 434/785 (55%), Gaps = 48/785 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + K 
Sbjct: 5   KIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE R
Sbjct: 65  AKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHN
Sbjct: 125 LSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R  +
Sbjct: 185 LSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKT 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   GDR+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ IEL
Sbjct: 245 EIETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RRT+
Sbjct: 305 KRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQ 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L++               
Sbjct: 365 YNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKE-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          +  Q  AI+ L+L RLT     +++ E   L   I E   IL++ 
Sbjct: 411 ------------YNFTPEQAEAIVTLQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + L  ++ +E+ ++K E   PRRT+I      L+++ +  +  ED+VV VSH GY+KR  
Sbjct: 459 NELAKVLTKEIRAIKKEFGNPRRTKIENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSS 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  ++A      G     +R++D+   +   +T + +  F++LG +    +  +     +
Sbjct: 519 IRSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWK 573

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQIN 669
             G+ +   + L   E I   M F   +       ++  T  G V++   +D+    +  
Sbjct: 574 DTGEHISQTIGLADNEEIIKAMIF---DKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYK 630

Query: 670 RSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +A+KL    ++++V   E   +   +L  ++ G  VR+ ++ + V   R + GVR 
Sbjct: 631 SHASVAIKLRDNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPVTGIRTA-GVRA 689

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV    +V          I  +    A + +   + E     +    V   + 
Sbjct: 690 INLKDDDQVADQILVKDGQD-----IAVITQRGAFKEMPVDEIEVGARARRGELVLRRLK 744

Query: 787 EERCQ 791
               +
Sbjct: 745 SHPHE 749



 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 92/248 (37%), Gaps = 14/248 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   VV  +  G ++R+ +        S      L   D  L ++     + + + T LG
Sbjct: 501 NEDVVVLVSHAGYIKRSSI---RSFKASEAEENGLREDDYPLLIQQTNTLSHLFMFTNLG 557

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADY----DERICYMK 756
             +  PI  I   A     G    + I LA  +++I   I    D             +K
Sbjct: 558 HIIYRPIHEI-ADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVK 616

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
             +          +   S+         +      E   + + +LT+S +G+  R    D
Sbjct: 617 QTAFNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVAD 676

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
             ++     G+RA ++   +++   +    V D   I +++ +G    +PV+EI + +RA
Sbjct: 677 VPVTGIRTAGVRAINLKDDDQVADQI---LVKDGQDIAVITQRGAFKEMPVDEIEVGARA 733

Query: 877 TKGVVIFS 884
            +G ++  
Sbjct: 734 RRGELVLR 741



 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 85/239 (35%), Gaps = 22/239 (9%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+      L  + EI +  T   E+ ++L +  G   R  I + +      + 
Sbjct: 474 KEFGNPRRTKI--ENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENG 531

Query: 723 GVRGISLAKGDQ--------VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                 L + D          +S   +         R  +    +  +      ++ I  
Sbjct: 532 ------LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKDTGEHISQTIGL 585

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR-ATDVS 833
             N+  ++  I ++  Q        I+  +  G  K+T+  D++  +R       A  + 
Sbjct: 586 ADNEEIIKAMIFDKLDQ-----PGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLR 640

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
              ++  +    P N+N  ++ +S +G  +R  V ++ +    T GV   +   D++V 
Sbjct: 641 DNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVA 699


>gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
 gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 799

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 295/888 (33%), Positives = 448/888 (50%), Gaps = 116/888 (13%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ + KCA
Sbjct: 15  VIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPDRPFRKCA 74

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+AL R+ Q +S R  L+ G GNFGS+DGDPPAA RYTE RL
Sbjct: 75  RVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAMRYTETRL 134

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              AH  LL ++ +  VDF PN+D S +EP+VL A+ P +L+NG  GIAVGMATNIP HN
Sbjct: 135 AAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMATNIPPHN 194

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  +A+ID P + L  L+  + GPDFPTG VI+   G+  AY TGRG+I +RGV+
Sbjct: 195 LGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEGAGLLRAYRTGRGTITLRGVA 254

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E  +       R+ IVVTE+PYQVNKAA +EK+A+LV + R+  IADLRDESDR+G R
Sbjct: 255 TLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRDESDREGLR 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A A  +L QLY  T+LQ  + +N++AL G +P + +L  IL  F+ FRE+ +
Sbjct: 315 VVIELKRDAPAAQLLEQLYHLTALQVTYGINLMALVGNQPRQLSLKEILSEFLQFREQTL 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R+ ++ L  A+ R HV+ GL I++  +++V+ I+R + +   A+ ELM R         
Sbjct: 375 LRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMIR--------- 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + LS+ Q  A++ + L RLT   R ++  E   L   I     
Sbjct: 426 -----------------LGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQT 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ++  R   L  +K+EL  +K E   PR T+I+      E       + + + +S+ G   
Sbjct: 469 LIHQRPERLKALKKELRQLKKEFGDPRLTQILRETPAPEAVPDCGGDSLWLEMSYRG--- 525

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            +PL  +R                 + +   F   T   +  F+  G VY   V RLP+ 
Sbjct: 526 DLPLQTWRP--------------WSEPLPLGFSAQTSDRLWVFTESGKVYPLSVERLPVT 571

Query: 610 SPQ--ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           S +   R + L+ +L    QGE + +++P     S      ++  T+ G ++    S   
Sbjct: 572 SHREGDRDQPLLTLLPESAQGETLLSVIP-----SQATADKLILLTRQGRIKVIPSSSLQ 626

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +   G    KL + D +  V      + ++L T  G+   F +  I V   R   G   
Sbjct: 627 NLRGRGLQLTKLKAGDTLGWVLPAQG-DHLVLATSRGRVFHFFLPDIPVLG-RLHQGQAA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L++ + ++    +   +                                         
Sbjct: 685 VRLSRQEILVGAIALSEHEN---------------------------------------- 704

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        ++ V+  G GK+       +      G  A  + +  ++  L  +  
Sbjct: 705 -------------VILVTASGLGKQVPLSLIEVVPLGHLGQLAIPLGQ--KLDRLAGIG- 748

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +  + LV+ +         EI I +R   G  I      E+V +V
Sbjct: 749 -RGSRPLALVTTQERAWITHGEEIPILNREVMGGAIAPLDPGEQVQAV 795



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            ++     +   +      R    D   +T L   +  E  +S    Q    K   ++ +
Sbjct: 555 TESGKVYPLSVERLPVTSHREGDRDQPLLTLLPESAQGETLLSVIPSQATADK---LILL 611

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  K   S    + N  G+G++ T +   + +G ++        D ++L + +G + 
Sbjct: 612 TRQGRIKVIPSS--SLQNLRGRGLQLTKLKAGDTLGWVLPA----QGDHLVLATSRGRVF 665

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              + +I +  R  +G      ++ E +V    + E E V
Sbjct: 666 HFFLPDIPVLGRLHQGQAAVRLSRQEILVGAIALSEHENV 705


>gi|326443887|ref|ZP_08218621.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 815

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 294/847 (34%), Positives = 423/847 (49%), Gaps = 66/847 (7%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +   + E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+ 
Sbjct: 8   TPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLR 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
            ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D PP
Sbjct: 68  PDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 127

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVG
Sbjct: 128 AAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVG 187

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY TGR
Sbjct: 188 MATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYETGR 247

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 248 GTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDR 307

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 308 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 367

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R    
Sbjct: 368 RFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER---- 423

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSEVQT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 424 ----------------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEI 461

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                IL S + L  ++  EL SV  +  T RRT ++E   +        +  +   V +
Sbjct: 462 AALTRILESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPCRVLL 521

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R                 G      D V      +    +   +S G + +  
Sbjct: 522 SSTGLLARTVTGDPLP-------EPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVA 574

Query: 603 VWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP     A       G  L   LSL   E +  +    E         +   T  G 
Sbjct: 575 VIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQG-----LALGTLQGV 629

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R         N+       L   D I+   E  T E D++  T   Q +R+P + +R 
Sbjct: 630 VKRVVPD--YPANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRP 687

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + G+ G+ LA G +V+S   V  A     E + +    S      S  T ++T  
Sbjct: 688 -QGRAAGGMAGVKLADGARVLSFTAVDPA----AEAVVFTAAGSTGALDDSVTTVKLTPF 742

Query: 776 KNDSSVEGNISEERCQELKLKEQFIL----------TVSEKGFGKRTSSYDFRISNRSGK 825
                        RCQ     E  +L               G        D R       
Sbjct: 743 DQYPRKGRATGGVRCQRFLKGEDVLLLAWAGEAPARAAQANGVPAELPEQDPRRDGSGTP 802

Query: 826 GIRATDV 832
            + A  V
Sbjct: 803 PVSAVAV 809



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 92/277 (33%), Gaps = 35/277 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    D +      +   K    D ++S  T T   DI   T  G
Sbjct: 514 DDPCRVLLSSTGLLARTVTGDPLP-----EPGPKRARHDLVVSSVTATARGDIGAVTSAG 568

Query: 704 QCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +       +      G      +SL   + VI +  +  +           
Sbjct: 569 RLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQGLALGTLQG 628

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E  +  + D  V G        EL+  E+ ++ ++      R  
Sbjct: 629 VVKRVVPDYPANKDELEVFSLKEGDRIVGG-------AELRTGEEDLVFITSDAQLLRYP 681

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLI 863
           +   R   R+  G+    ++       +++   V+   + ++ +  G          T+ 
Sbjct: 682 AAQVRPQGRAAGGMAGVKLADGAR---VLSFTAVDPAAEAVVFTAAGSTGALDDSVTTVK 738

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             P ++     RAT GV      K E V+ +    E+
Sbjct: 739 LTPFDQYPRKGRATGGVRCQRFLKGEDVLLLAWAGEA 775



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 21/219 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-------MA 739
                 +   +L +  G   R                  G   A+ D V+S         
Sbjct: 509 ALEVADDPCRVLLSSTGLLARTVTGDPLPEP--------GPKRARHDLVVSSVTATARGD 560

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I     A    R+  +      +   +        L    S+E + +      L    Q 
Sbjct: 561 IGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQG 620

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +   + +G  KR    D+     +   +    + + + I  +         + ++ ++  
Sbjct: 621 LALGTLQGVVKRV-VPDYPA---NKDELEVFSLKEGDRI--VGGAELRTGEEDLVFITSD 674

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             L+R P  ++R   RA  G+     A   RV+S   + 
Sbjct: 675 AQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFTAVD 713


>gi|294815537|ref|ZP_06774180.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|294328136|gb|EFG09779.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 788

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 289/808 (35%), Positives = 417/808 (51%), Gaps = 56/808 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +   + E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+ 
Sbjct: 24  TPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLR 83

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
            ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D PP
Sbjct: 84  PDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 143

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVG
Sbjct: 144 AAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVG 203

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY TGR
Sbjct: 204 MATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYETGR 263

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 264 GTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDR 323

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 324 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 383

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R    
Sbjct: 384 RFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER---- 439

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSEVQT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 440 ----------------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEI 477

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                IL S + L  ++  EL SV  +  T RRT ++E   +        +  +   V +
Sbjct: 478 AALTRILESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPCRVLL 537

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R                 G      D V      +    +   +S G + +  
Sbjct: 538 SSTGLLARTVTGDPLP-------EPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVA 590

Query: 603 VWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP     A       G  L   LSL   E +  +    E         +   T  G 
Sbjct: 591 VIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQG-----LALGTLQGV 645

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R         N+       L   D I+   E  T E D++  T   Q +R+P + +R 
Sbjct: 646 VKRVVPD--YPANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRP 703

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + G+ G+ LA G +V+S   V  A     E + +    S      S  T ++T  
Sbjct: 704 -QGRAAGGMAGVKLADGARVLSFTAVDPA----AEAVVFTAAGSTGALDDSVTTVKLTPF 758

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTV 803
                        RCQ     E  +L  
Sbjct: 759 DQYPRKGRATGGVRCQRFLKGEDVLLLA 786



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 90/273 (32%), Gaps = 35/273 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    D +      +   K    D ++S  T T   DI   T  G
Sbjct: 530 DDPCRVLLSSTGLLARTVTGDPLP-----EPGPKRARHDLVVSSVTATARGDIGAVTSAG 584

Query: 704 QCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADY--DERIC 753
           + +R  +  +       +      G      +SL   + VI +  +  +           
Sbjct: 585 RLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQGLALGTLQG 644

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K +         + E  +  + D  V G        EL+  E+ ++ ++      R  
Sbjct: 645 VVKRVVPDYPANKDELEVFSLKEGDRIVGG-------AELRTGEEDLVFITSDAQLLRYP 697

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLI 863
           +   R   R+  G+    ++       +++   V+   + ++ +  G          T+ 
Sbjct: 698 AAQVRPQGRAAGGMAGVKLADGAR---VLSFTAVDPAAEAVVFTAAGSTGALDDSVTTVK 754

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             P ++     RAT GV      K E V+ +  
Sbjct: 755 LTPFDQYPRKGRATGGVRCQRFLKGEDVLLLAW 787



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 21/219 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-------MA 739
                 +   +L +  G   R                  G   A+ D V+S         
Sbjct: 525 ALEVADDPCRVLLSSTGLLARTVTGDPLPEP--------GPKRARHDLVVSSVTATARGD 576

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I     A    R+  +      +   +        L    S+E + +      L    Q 
Sbjct: 577 IGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQG 636

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +   + +G  KR    D+     +   +    + + + I  +         + ++ ++  
Sbjct: 637 LALGTLQGVVKRV-VPDYPA---NKDELEVFSLKEGDRI--VGGAELRTGEEDLVFITSD 690

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             L+R P  ++R   RA  G+     A   RV+S   + 
Sbjct: 691 AQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFTAVD 729


>gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501]
 gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501]
          Length = 750

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/806 (30%), Positives = 400/806 (49%), Gaps = 74/806 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E ++GPDFPT A I+  R  + 
Sbjct: 177 TGIAVGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IVVT +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KIYETGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L+S + VN   +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR    P+    
Sbjct: 352 TLLSEWLTYRIGTVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            LSE+Q   IL+ RL +L  L    IR 
Sbjct: 410 -LMAR--------------------------FELSELQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E +  L +L S ++L  ++++ELL   +     RR+ IVE      + + + +
Sbjct: 443 EQDELAKERERLLALLGSEAKLKKLVRKELLEDAETYGDDRRSPIVERAEARALTENELL 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D         ++   +F  
Sbjct: 503 PSEPVTVVISEKGWA--------RCAKGHDIDAGGLSYKAGDNFKAAAAGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+DE+       V A+ 
Sbjct: 555 STGRSYSLAAHTLP--SARGQGEPLTGRLTPPPGASFECVL-LPDDEA-----LYVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +   +++       +++ +   T  G+ + FP+ 
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDDWLAAVTTEGRLLVFPVR 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ +    VL A A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELK 794
            E++   K +    GN      Q ++
Sbjct: 719 AEDLEHYKGERGRRGNKLPRGFQRVE 744



 Score = 45.3 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
            C  L   E   +  S+ G+G      D +  N++GK + +           +VA  P+ 
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAR-----VVAPRPLA 644

Query: 848 -NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             ++D +  V+ +G L+  PV ++    +  KG  I      ERV S    RE  +VD
Sbjct: 645 SREDDWLAAVTTEGRLLVFPVRDLPQLGKG-KGNKIIGI-PGERVAS----REEYLVD 696


>gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 971

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 319/940 (33%), Positives = 482/940 (51%), Gaps = 93/940 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+ I  D      I  + + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   
Sbjct: 6   ENTIPKDN----NIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHM 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +    ++ Y K ARI G+++GKYHPHG++++Y+A+  +AQD+S RL LIEG GN+GS+DG
Sbjct: 62  LKAFPDRPYYKSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDG 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   A  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GI
Sbjct: 122 DSAAAMRYTEARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG+ATNIP HNLGEV DG +A IDN DI    LME ++GPD PTG +++G   + +AY 
Sbjct: 182 AVGLATNIPPHNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILIGEKSLLSAYE 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIAD 298
           TG G +  R  ++IEK    R  IV+TE PY+ NK+ +L+ I+E+  +KR    +  I D
Sbjct: 242 TGEGKVPYRAKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITD 301

Query: 299 LRDESDRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +RDESDR G R VIE K+     +A+ IL  L++ T LQ   S NMVAL+  KPE   L 
Sbjct: 302 IRDESDRNGIRAVIEFKKSVDEDNAEKILKYLFKKTDLQCNISFNMVALSNGKPETMGLK 361

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+K +V  ++E+V RRTK  L+ A  R H++ G   A+  LDEV+  IR S + + A  
Sbjct: 362 TIIKHYVEHQKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKKNASE 421

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ +                             +E+Q +AILEL L RLTGL     + 
Sbjct: 422 NLIDK--------------------------FGFTELQAQAILELMLYRLTGLEIKVFQK 455

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L   IK+   IL+S   LL +IK EL  V D+    RRT I+  +    ++ E+ I
Sbjct: 456 EYAELEKLIKKLEKILASEKELLRVIKTELKEVCDKYSDARRTTIISDDTKSKIDVEELI 515

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           V E++++TVS+ G++KR+PL  Y    R       +  R+ D++  L   +T  ++L F+
Sbjct: 516 VVEEVMITVSNDGFIKRIPLKNY---NRSNSDPDDIEYREGDYLKYLISSNTKDNLLIFT 572

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFA 651
           + G++Y+ K   +P    + +G+ L  ++       E+I  I+     ++        F 
Sbjct: 573 NAGYMYQTKGINIPELRWKEKGERLDGVIKSLNLDDEKIVGIISL---DNFTPGKGFRFI 629

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T  G ++ + L D  Q + +   A+KL   DE+++V     E+    +  TT+       
Sbjct: 630 TSGGGIKISGL-DKFQTSYTKLQALKLRDTDELINVSLIDLEDESKFLKFTTRNELEFTL 688

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--------ADYDERICYMKHMSA 760
            I  +   A RN +  +  +L + D V+ +      +        ++  +   Y K    
Sbjct: 689 EIPEV-EDATRNILPTQLFNLPEDDIVVDVNDSEELEYFELNLGISEKGKLKAYSKIKPD 747

Query: 761 QRRLISGDTEEITSLKN------------------DSSVEGNISEERCQEL--------- 793
             ++ +  TE++    N                  D S++  I +    E          
Sbjct: 748 YLKVKTKSTEQLLIFTNTGFIYKVPVFMMKNIFTKDMSIDQFIGKIGRNEKIIRIASVAS 807

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQ 852
             +++ I T ++ G  K+T   ++      G+  +        E   LV+V     +   
Sbjct: 808 YDEDRCIYTFTKTGMVKKTLLKEYE-----GEFFKQPCHKFKYEFDELVSVDIDKISLGY 862

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +I+V+ KG  IR PV  +    +   GV   S   D+ V+
Sbjct: 863 LIMVTKKGMAIRFPVENVNSMGKIASGVTGISLKDDDEVI 902


>gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
 gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
          Length = 818

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 294/890 (33%), Positives = 432/890 (48%), Gaps = 119/890 (13%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
                E+ E+ I  + + +EMQN++L Y+ +VI  RA+PD RDGLKPV RRIL+G  ++G
Sbjct: 7   TTPPPEDFEEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELG 66

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  ++ +VK  RI GEVMGKYHPHG+ AIYDAL RMAQ ++LRL LI+G GNFGS+D D 
Sbjct: 67  VRPDRGHVKSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DG 125

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL ++A  ++  L ++TVDF PNYD +  +P VL A +PN+LVNG  GIAV
Sbjct: 126 PAAARYTEARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAV 185

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNL EV+     +I NP   LD LM+ + GPD P G  I+G  GI++AY TG
Sbjct: 186 GMATNMAPHNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGGRIVGLEGIRDAYLTG 245

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS   R  + IE  +  R+ IVVTE+PY V    ++EKI +LV+ K++  I+DL+D SD
Sbjct: 246 RGSFRTRATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLSD 305

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G + D +L QLYR T ++  F +N VAL   +P    L  +L+ +V 
Sbjct: 306 RGHGLRLVIEVKNGFNPDAVLEQLYRLTPMEENFGINNVALVEGQPRTLGLKQLLQVYVD 365

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR +VV RRT++ L K  +R H++ GL IA+ ++DEV+++IR S +  TA+  LM     
Sbjct: 366 FRTDVVRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLMD---- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   IL+L+L RLT   R ++ +E + L  +
Sbjct: 422 ----------------------VFDLSDPQATYILDLQLRRLTRFSRIELESEKSELERQ 459

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-----DEDCIVREDM 538
           I+E   +L S   LL ++  EL  V  +  TPRRT ++E               I  +  
Sbjct: 460 IEELRALLESDRLLLKLVSTELAEVAKKHGTPRRTVLLESSGQARPTTTATPLEITDDPC 519

Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            V +S  G + R     P++   ++ R             D +      +    +   ++
Sbjct: 520 WVLLSSTGLLARTVGPEPVTAEGSRSR------------HDALVGAVRTTARGELGLVTT 567

Query: 595 LGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G + +     LP   P         G  L   + L + E   TI+P            V
Sbjct: 568 SGRMVRLSALELPTLPPTNGAPSLGGGAPLAAYVDLAKDEEPLTIVPI-----GAEAPVV 622

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVR 707
              T  G V+R           +    + L   D ++      +++ D++  T   Q +R
Sbjct: 623 ALGTASGVVKRVSPD---TPKGTDWSLISLKDGDRVVGAAVADRDDLDLVFITSDAQLLR 679

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F    +R   GR++ G+ G+ LA G   +   +V                        S 
Sbjct: 680 FAAKTVRP-QGRSAGGMAGVKLAAGASAVFFGVVDP----------------------SS 716

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D   +TS  +  ++ G                    +E G  K T   ++    R+  G+
Sbjct: 717 DGVVVTSAGSSGALPG--------------------TEAGTLKVTPYSEYPPKGRATGGV 756

Query: 828 RATDVSKINEI--GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           R     K  +    A     PV  +         G  I +P        R
Sbjct: 757 RCHRFLKGEDTLVVAFAGNTPVRASA------ANGVAIELP----PATGR 796



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 81/235 (34%), Gaps = 30/235 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG--------ISLAKGD 733
           D ++     T   ++ L T  G+ VR     +      N     G        + LAK +
Sbjct: 548 DALVGAVRTTARGELGLVTTSGRMVRLSALELPTLPPTNGAPSLGGGAPLAAYVDLAKDE 607

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +++  +       +  +  +   S   + +S DT + T     S  +G+         
Sbjct: 608 EPLTIVPI-----GAEAPVVALGTASGVVKRVSPDTPKGTDWSLISLKDGDRV-VGAAVA 661

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  ++ ++      R ++   R   RS  G+    ++      + V    V+ +   
Sbjct: 662 DRDDLDLVFITSDAQLLRFAAKTVRPQGRSAGGMAGVKLAAG---ASAVFFGVVDPSSDG 718

Query: 854 ILVS-----------DKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVE 895
           ++V+           + GTL   P +E     RAT GV      K E   VV+  
Sbjct: 719 VVVTSAGSSGALPGTEAGTLKVTPYSEYPPKGRATGGVRCHRFLKGEDTLVVAFA 773


>gi|326773486|ref|ZP_08232769.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326636716|gb|EGE37619.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 847

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 280/877 (31%), Positives = 425/877 (48%), Gaps = 93/877 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
              +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG
Sbjct: 6   TTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMG 65

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D 
Sbjct: 66  LRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DG 124

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL  +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG  GIAV
Sbjct: 125 PAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAV 184

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY TG
Sbjct: 185 GMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIVGLDGIREAYRTG 244

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +D
Sbjct: 245 RGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDVADLTD 304

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L+ FV 
Sbjct: 305 RKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLEVFVR 364

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  VV RRT++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ    
Sbjct: 365 HRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ---- 420

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q   ILEL+L RLT     ++  E + L  E
Sbjct: 421 ----------------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELARE 458

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---------------- 527
           I+    IL+    L  ++ +EL +V ++  TPRRT ++E   +                 
Sbjct: 459 IEALEAILADDVLLRRVVSRELAAVAEQFGTPRRTVLLEASGERVTSSAAAETADDASAS 518

Query: 528 ---------------------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
                                     +  +   V +S  G V R   +   A R GG+  
Sbjct: 519 GRGAKRAGGAAQPMTLMPSASPVPLTVPDDPCRVLLSATGLVARTAGTEPVA-RTGGR-- 575

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKALIN 620
                +  D +T     +    +   +  G +    V               A    +  
Sbjct: 576 -----QPHDALTSQVATTARGRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQ 630

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           ++ +   E++  ++P      S +N  +V AT  G ++R K  D  + N      + L  
Sbjct: 631 LVDIEPEEKVVGLVPV----GSADNPPIVLATAEGVIKRVKPGDEPR-NAESWEVISLSE 685

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D ++  +T    + + L T   Q +RF  + +R   GR + G+ GISL +G +VI+ A 
Sbjct: 686 GDRVVFADTAADTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARVIAGAA 744

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           V   +   +  +  +           G + ++T L    +        R       E  +
Sbjct: 745 V-PEELLAEAVVVTVAGSEGSLPGTGGSSVKVTPLDRYPAKGRATGGVRSHRFLRGEDEL 803

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +                R     GK +   +  +  +
Sbjct: 804 MVA-------WVGVAPPRALREGGKPVTLPEPDERRD 833



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 72/233 (30%), Gaps = 34/233 (14%)

Query: 686 SVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRN-------------SVGVRGISLAK 731
            V     ++    L +  G   R   +      G               + G  G     
Sbjct: 540 PVPLTVPDDPCRVLLSATGLVARTAGTEPVARTGGRQPHDALTSQVATTARGRIGAVTDT 599

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G +++ + +V   +    E    +   +  R+L+  + EE                    
Sbjct: 600 G-RLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVG-------------LVP 645

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   I+  + +G  KR    D     R+ +      +S+ +    +V      D D
Sbjct: 646 VGSADNPPIVLATAEGVIKRVKPGD---EPRNAESWEVISLSEGDR---VVFADTAADTD 699

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + LV+    L+R    ++R   R   G+   S  +  RV++   + E  + +
Sbjct: 700 FLALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAE 752



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 34/276 (12%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +   R+G         D + S    T    I   T  
Sbjct: 546 PDDPCRVLLSATGLVARTAGTEPVA--RTG----GRQPHDALTSQVATTARGRIGAVTDT 599

Query: 703 GQCVRFPI-SAIRVFAGRNSVGVRG-------ISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   + S   V     + G+ G       + +   ++V+ +  V  AD   +  I  
Sbjct: 600 GRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSAD---NPPIVL 656

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                  +R+  GD           S+          +      F+  V+      R  +
Sbjct: 657 ATAEGVIKRVKPGDEPRNAESWEVISLS-EGDRVVFADTAADTDFLALVTSDAQLLRFQA 715

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVSDKGT----------- 861
              R   R   G+    + +      ++A   V +    + ++V+  G+           
Sbjct: 716 AKVRPQGRGAGGMAGISLHEGAR---VIAGAAVPEELLAEAVVVTVAGSEGSLPGTGGSS 772

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +   P++      RAT GV      + E  + V  +
Sbjct: 773 VKVTPLDRYPAKGRATGGVRSHRFLRGEDELMVAWV 808


>gi|320531395|ref|ZP_08032363.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136396|gb|EFW28376.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 849

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 275/845 (32%), Positives = 416/845 (49%), Gaps = 88/845 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
              +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG
Sbjct: 6   TTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMG 65

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D 
Sbjct: 66  LRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DG 124

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL  +A  L  DL ++TVDF PNYD +  EP VL A +PN+LVNG  GIAV
Sbjct: 125 PAAPRYTEARLAASALALTADLDENTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAV 184

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY TG
Sbjct: 185 GMATNMPPHNLVEVVAAARHLLTHPEASLEDLMAFVPGPDLPAGGMIVGLDGIREAYRTG 244

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +D
Sbjct: 245 RGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIITRIKEAVGSKKLQGITDVADLTD 304

Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L  FV 
Sbjct: 305 RRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLDVFVR 364

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  VV RRT++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ    
Sbjct: 365 HRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ---- 420

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q   ILEL+L RLT     ++  E + L  E
Sbjct: 421 ----------------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELARE 458

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---------------- 527
           I+    IL+    L  ++ +EL  V ++  TPRRT ++E   +                 
Sbjct: 459 IEALEAILADDVLLRRVVSRELADVAEQFGTPRRTVLLEASGEPVTSSAGSAATPDDAST 518

Query: 528 -----------------------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                                       +  +   V +S  G V R+P +   A  R G+
Sbjct: 519 ASGGGEKRTGASAQPMTLMPSASPVPLTVPDDPCRVVLSATGLVARIPGAEPVA--RTGR 576

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKAL 618
                  +  D +T     +    +   +  G +    V               A    +
Sbjct: 577 ------RQPHDALTSQVSATARGRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQV 630

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             ++ +   E++  ++P      S +N  +V AT  G ++R K  D  + N      + L
Sbjct: 631 RQLVDIEPEEKVVGLVPV----GSADNPPIVLATAEGVIKRVKPGDEPR-NAESWEVISL 685

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++   T    + + + T   Q +RF  + +R   GR + G+ GISL +G +VI+ 
Sbjct: 686 SEGDRVVFAGTAADTDFLTMVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARVIAG 744

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A V   +   +  +  +           G + ++T L    +        R       E 
Sbjct: 745 AAV-PEELLAEAVVVTVTGSEGSLPGTGGGSVKVTPLDRYPAKGRATGGVRSHRFLRGED 803

Query: 799 FILTV 803
            ++  
Sbjct: 804 ELMVA 808



 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 34/233 (14%)

Query: 686 SVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN-------------SVGVRGISLAK 731
            V     ++   +  +  G   R P +      GR              + G  G     
Sbjct: 542 PVPLTVPDDPCRVVLSATGLVARIPGAEPVARTGRRQPHDALTSQVSATARGRIGAVTDT 601

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G +++ + +V   +    E    +   +  R+L+  + EE                    
Sbjct: 602 G-RLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVG-------------LVP 647

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   I+  + +G  KR    D     R+ +      +S+ +    +V      D D
Sbjct: 648 VGSADNPPIVLATAEGVIKRVKPGD---EPRNAESWEVISLSEGDR---VVFAGTAADTD 701

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + +V+    L+R    ++R   R   G+   S  +  RV++   + E  + +
Sbjct: 702 FLTMVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAE 754



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 28/273 (10%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +   R+G+        D + S  + T    I   T  
Sbjct: 548 PDDPCRVVLSATGLVARIPGAEPVA--RTGRR----QPHDALTSQVSATARGRIGAVTDT 601

Query: 703 GQCVRFPI-SAIRVFAGRNSVGVRG-------ISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   + S   V     + G+ G       + +   ++V+ +  V  AD   +  I  
Sbjct: 602 GRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSAD---NPPIVL 658

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                  +R+  GD           S+                 F+  V+      R  +
Sbjct: 659 ATAEGVIKRVKPGDEPRNAESWEVISLS-EGDRVVFAGTAADTDFLTMVTSDAQLLRFQA 717

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAV----------FPVNDNDQIILVSDKGTLIR 864
              R   R   G+    + +   + A  AV            V  ++  +  +  G++  
Sbjct: 718 AKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAEAVVVTVTGSEGSLPGTGGGSVKV 777

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            P++      RAT GV      + E  + V  +
Sbjct: 778 TPLDRYPAKGRATGGVRSHRFLRGEDELMVAWV 810


>gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 830

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 276/748 (36%), Positives = 427/748 (57%), Gaps = 42/748 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  +  +   + +  + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MKKKTVE-EAVDHANVLTSPLEEIMGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G  W+K Y K A+  G V+G YHPHG++++YDA+ RM+QDW +R   I+ QGN GS+
Sbjct: 60  FVDGNTWDKAYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL K + +LL D+ KDTV + PN+D +  EP VL ARYPN+LVNG  
Sbjct: 120 DDDPAAAMRYTEARLGKISEYLLQDIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGIT 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATNIP HNLGE +D  +  I +PD  LD LME ++GPDFPTG ++ G  GIK+A
Sbjct: 180 GIAAGYATNIPPHNLGECIDASIYRIQHPDCTLDDLMEFVQGPDFPTGGIVQGLDGIKDA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + +G+G I++R    IE+T    +QI+V EIPY+V K+ M++KI ++   K+I  I D+R
Sbjct: 240 FTSGKGRIMVRSKVSIEQTKT-VQQIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVI+LK+ A A +ILN LY+ T LQ  ++ N++A+   +P +  L  +L A
Sbjct: 299 DESDRNGLRVVIDLKKDADAQLILNYLYKNTDLQVSYNYNVIAIKDKRPVQMGLAAMLDA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R EV++RR+ + L+K   R H+L GL  AV+ LDE++ +IR S +   ++ ++++ 
Sbjct: 359 FIAHRREVILRRSAFDLDKKEKRCHILEGLIKAVSILDEIIALIRSSKDKADSKVKIIE- 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE Q  AI+ +RL RL+      +R E  +L
Sbjct: 418 -------------------------AFGFSEPQAEAIVTMRLYRLSNTDITQLREEFANL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR--IVEGLLDMEDEDCIVREDM 538
             EIKE  +IL    +L  ++  EL  VK    TPR T+       + ++    I +E +
Sbjct: 453 QAEIKELHEILEDPKKLKKVMVAELKEVKKAFPTPRLTKIEHEIEEIVIDKVAMIPQEQV 512

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           + T+S  GYVKRV +  Y A      G     +++ D +     V+T  ++LFF+S G  
Sbjct: 513 MFTISRDGYVKRVSMRSYGAANDAMTG-----IKEGDHLIGYGEVNTLDNILFFTSKGTY 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+ +     +  G  + + + +   E+IT      + ++   N Y++  T+HG V+
Sbjct: 568 GYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAFIVKDFKT---NSYMISITRHGLVK 624

Query: 659 RNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  + ++ +  N      MKL   DE++      +E++IL+ +K G   R+PIS I   +
Sbjct: 625 KTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEILIASKKGYITRYPISLIPATS 684

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
            R S GV+ ++L + +  I+ A++ + D
Sbjct: 685 PR-SKGVKAMNLVEDE--IASALIYNND 709



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 23/211 (10%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
           V    QE  +   ++ G   R             +       + +GD +I    V   D 
Sbjct: 504 VAMIPQEQVMFTISRDGYVKRVS------MRSYGAANDAMTGIKEGDHLIGYGEVNTLDN 557

Query: 746 -------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                    Y     Y    +  + + S    +I    ++   +  I ++          
Sbjct: 558 ILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAFIVKD-----FKTNS 612

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           ++++++  G  K+T+  ++ +S R+ K +    + + +E   +V  +   + D+I++ S 
Sbjct: 613 YMISITRHGLVKKTAICEYEVS-RNNKTMSNMKLLEDDE---VVQTYVAYEEDEILIASK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           KG + R P++ I   S  +KGV   +  +DE
Sbjct: 669 KGYITRYPISLIPATSPRSKGVKAMNLVEDE 699



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 11/243 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                +   ++ G V+R  +  +   N +      +   D ++        ++IL  T  
Sbjct: 508 PQEQVMFTISRDGYVKRVSMRSYGAANDA---MTGIKEGDHLIGYGEVNTLDNILFFTSK 564

Query: 703 GQCVRFP--ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           G     P        +    S     I +   +++    IV   D   +  +  +     
Sbjct: 565 GTYGYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAFIV--KDFKTNSYMISITRHGL 622

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFGKRTSSYDFRI 819
            ++    + E   + K  S+++    +E  Q     +E  IL  S+KG+  R        
Sbjct: 623 VKKTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEILIASKKGYITRYPISLIPA 682

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           ++   KG++A ++ +     AL+     NDN Q+++ SD     R+ + +I +  R TKG
Sbjct: 683 TSPRSKGVKAMNLVEDEIASALI---YNNDNRQLVVFSDDCACKRMKLTDIDVTGRPTKG 739

Query: 880 VVI 882
            ++
Sbjct: 740 SML 742


>gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 750

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/806 (30%), Positives = 400/806 (49%), Gaps = 74/806 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E ++GPDFPT A I+  R  + 
Sbjct: 177 TGIAVGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IVVT +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KIYETGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L+S + VN   +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR    P+    
Sbjct: 352 TLLSEWLTYRIGTVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            LSE+Q   IL+ RL +L  L    IR 
Sbjct: 410 -LMAR--------------------------FELSELQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E +  L +L S ++L  ++++ELL   +     RR+ IVE      + + + +
Sbjct: 443 EQDELAKERERLLALLGSEAKLKKLVRKELLEDAETYGDDRRSPIVERAEARALTENELL 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D         ++   +F  
Sbjct: 503 PSEPVTVVISEKGWA--------RCAKGHDIDAGGLSYKAGDNFKAAAAGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+DE+       V A+ 
Sbjct: 555 STGRSYSLAAHTLP--SARGQGEPLTGRLTPPPGASFECVL-LPDDEA-----LYVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +   +++       +++ +   T  G+ + FP+ 
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDDWLAAVTTEGRLLVFPVR 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ +    VL A A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELK 794
            E++   K +    GN      Q ++
Sbjct: 719 AEDLEHYKGERGRRGNKLPRGFQRVE 744



 Score = 45.3 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
            C  L   E   +  S+ G+G      D +  N++GK + +           +VA  P+ 
Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAR-----VVAPRPLA 644

Query: 848 -NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             ++D +  V+ +G L+  PV ++    +  KG  I      ERV S    RE  +VD
Sbjct: 645 SREDDWLAAVTTEGRLLVFPVRDLPQLGKG-KGNKIIGI-PGERVAS----REEYLVD 696


>gi|116491057|ref|YP_810601.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
 gi|116091782|gb|ABJ56936.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
          Length = 811

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 252/738 (34%), Positives = 405/738 (54%), Gaps = 38/738 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  +   Y
Sbjct: 3   DESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG YHPHG+++IYDAL RM+Q+W +R  LI+  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L DL +  VD   N+D +  EP VL +R PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++  + ++ +P   L+ LM+ + GPDFPTG +I G  GIKNAY TGRG + +R
Sbjct: 183 PHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKVYLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    ++QI +TE+PY+VNK+ ++ +I E+   K +  I ++RD++ R+G  + 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+A+ IL+ L++ T LQ  ++ NM A+N  +P    L   L AF+ FR+EV+ R
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKEVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA+ R  ++ GL   ++ LDEVV  IR S + + A+  L+++           
Sbjct: 363 RTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S+ Q  AI+ L+L RLT      ++NE + L  +I E   IL
Sbjct: 412 ---------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
                L  +++ EL  ++ +   PRR++I   +    ++    I  ED++V ++  GY K
Sbjct: 457 KETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+A    G       + D+D+   L  V+T +S+  F++ G +   +V+ L   
Sbjct: 517 RASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADT 569

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   +S L + E +  +  F + + +   ++         V +N L+     
Sbjct: 570 KWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYY 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +    A+ +  ++ ++SV     +N  +++ T+ G   +FPI  I +     S G +  
Sbjct: 630 KKRASKAIAIKGKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGEIALMTA-KSSGAKPA 688

Query: 728 SLAKGDQVISMAIVLHAD 745
            ++K D+++SM ++   D
Sbjct: 689 KISKKDRIVSMDLIDSED 706



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 17/237 (7%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK+G  +R     +   + +G     L   D  + +      + + + T  G
Sbjct: 502 NEDVIVQITKNGYAKRASFRSYKATDDNG-----LTDDDYPVYLAKVNTLSSLFIFTNKG 556

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             +   +  +        VG    + IS    D+++ + +    D        +    + 
Sbjct: 557 NLIYRQVYEL-ADTKWKDVGEHLSQEISGLAEDEIV-IKVFDFKDLKQTGTFVFTSSDAF 614

Query: 761 QRRLISGDTEEITSLKN----DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +++           K       +++G            +   ++  ++KG+  +    +
Sbjct: 615 VKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGE 674

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             +      G +   +SK +    +V++  ++  D ++L+SD+G    +   EI I+
Sbjct: 675 IALMTAKSSGAKPAKISKKDR---IVSMDLIDSEDLMVLMSDRGHSKIINPLEIPIS 728


>gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
 gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
          Length = 754

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 255/754 (33%), Positives = 396/754 (52%), Gaps = 52/754 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   ++ +E+++ YL YA++ I+ R++PD+RDGLKPVHRRILF M  + ++ N  Y K
Sbjct: 6   EQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPNSPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A YDA+ R+AQ++++R  L++GQGNFG++DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL+DL  DTVDF P YDGS +EPVVL AR+PN+L NG  GIAVGM+TN+P H
Sbjct: 126 RLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMSTNVPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           N+GE++D C+ +I  P+  ++ LM+ +  PDFPTG +++         Y+ GRGS+ +R 
Sbjct: 186 NVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRGSLRLRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E       QIVVTEIPYQV K+ ++E+IA+LV +++   + ++RDESD     V+ 
Sbjct: 246 RWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDENLRIVLE 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGILKAFVAFREEVVVR 371
              R    ++I++ L++++ L+S  S N  V + G++PE   L GIL+ ++  R  V  R
Sbjct: 306 PRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDHRFVVHTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K R+R H+L    I   N+DEV+ II+ + +P      LM R           
Sbjct: 366 RASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPV---LMAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q  AIL +RL  L  L    IR E+  L         +L
Sbjct: 412 ---------------FSLDEIQAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAML 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYVK 549
           +    +   I+ EL + + E    RRT I   + D+       + +E + V +S +G+VK
Sbjct: 457 ADDKIMWKAIRDELKATRKEFADVRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   A +        +  + +D +   F   T+ SV F S  G ++      LP G
Sbjct: 517 --------ANKGHDVNTEVLRFKGDDLLLRSFPCYTNQSVSFISQSGKLFTILASNLPAG 568

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ L ++  L+ G+R+   +P   ++        +  T+ G   R K  D I   
Sbjct: 569 --KGFGEPLTSMFDLDGGDRVLWALPVDPEQE------YLLITRLGQGFRVKGVDLIANQ 620

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R GK  + L S D+ L +        +   ++  + + FPI    + A     GVR   L
Sbjct: 621 RKGKQLITLKSGDQPLHLHPVKGP-WVGSISRSRRLLIFPIEQFPLMA--KGKGVRVQKL 677

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
              + V+ +      +    +     KH++   +
Sbjct: 678 GADEVVVDVTTFTDEEGFVLDSGKKTKHVTDYDQ 711


>gi|257068609|ref|YP_003154864.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
 gi|256559427|gb|ACU85274.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
          Length = 822

 Score =  534 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 297/850 (34%), Positives = 437/850 (51%), Gaps = 64/850 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+  E+ I  + +T EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+   
Sbjct: 17  DDAVEETIVDIDVTSEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLRPE 76

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K +VK  R+ GEVMGK HPHG+ AIYDAL RMAQ +++RL L++G GNFGS+D  P A  
Sbjct: 77  KGHVKSQRVVGEVMGKLHPHGDTAIYDALVRMAQSFNMRLPLVDGHGNFGSLDNGPAA-P 135

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  AA  + D L +D VD  PNYD    +P VL A+YPN+LVNG  GIAVGMAT
Sbjct: 136 RYTEARLAPAALLMTDSLDEDVVDMVPNYDNQLLQPEVLPAQYPNLLVNGASGIAVGMAT 195

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNL E +     +ID+P+ +L+ LM  + GPD PTG  I+G  GI++AY TGRGS 
Sbjct: 196 NMAPHNLVETIAAARHLIDHPEAELEELMRFVPGPDLPTGGRIVGLDGIRDAYRTGRGSF 255

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG- 307
            +R  + IE  +  R+ IVVTE+PYQV    + EK+ + V+ K++  I D +D +DR   
Sbjct: 256 KMRATTRIENVTSRRKGIVVTELPYQVGPERLAEKLRDAVQSKKVQGITDYQDLTDRHHG 315

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ +K G   D +L QLY++T L+  F +N VAL   +P    L  +L+ FV  R E
Sbjct: 316 LRLVLTVKSGFDPDAVLAQLYKFTPLEESFGINNVALVDGQPRTLGLKQMLEVFVGHRLE 375

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L K R R H++ GL +A+ ++DEV++I+R S + E AR  LMQ        
Sbjct: 376 VVRRRTEHRLGKRRARLHLVEGLLLAIVDIDEVIQIVRQSDDAEIARTRLMQ-------- 427

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++VQ   ILELRL RLT   + D+  E + L  EI+  
Sbjct: 428 ------------------VFDLTQVQAEYILELRLRRLTRFSQIDLEAERDDLRREIERL 469

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED----CIVREDMVVTVS 543
            +IL S + L  ++ +EL +V  E    RRT ++E              +  E   V ++
Sbjct: 470 EEILGSETVLRALVSEELAAVAAEHGDSRRTVLLEAAEKPAVVAGASLEVADEPCHVLLT 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + RV        R G +G         D +      +T + V   +  G V +  V
Sbjct: 530 GTGLIARVTGEEP-VPREGPRGS-------HDVIVAGVHSTTRSEVGVVTDRGRVLRLSV 581

Query: 604 WRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             LP  +P       A G  L +++ L + E    ++   E + +     +   T+HG V
Sbjct: 582 VDLPSLAPTHGAPSLAGGTRLADLIDLERDEHALGLIRLAEADIARGGG-IALGTRHGVV 640

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRV 715
           +R +          G   + L   D ++ V      ++ D+   T   Q + FP S +R 
Sbjct: 641 KRVQPE---FPRSDGFEIISLKDGDAVVGVVDLEDDEDLDLAFITSDAQLLHFPSSGVRP 697

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV GI LA G  V+S   +   D      +  +   S+   L+   + ++TSL
Sbjct: 698 -QGRGAGGVAGIKLAAGAHVLSFGAI---DVTAPADVVTVAGSSSTLPLLQTGSLKVTSL 753

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-K 834
               +     +  RC      E  ++       G     +  R S+ +G+ I   + + +
Sbjct: 754 TEFPAKGRATAGMRCHRFLRGEDTLI-------GAWVVPHPARASSEAGQPIDLPEPTGR 806

Query: 835 INEIGALVAV 844
            +  G  VAV
Sbjct: 807 RDGSGTPVAV 816



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 32/276 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  T  G + R    + +   R G         D I++    T  +++ + T  G
Sbjct: 521 DEPCHVLLTGTGLIARVTGEEPVP--REGPRGSH----DVIVAGVHSTTRSEVGVVTDRG 574

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +   A  +     + G R    I L + +  + +  +  AD      I   
Sbjct: 575 RVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDLERDEHALGLIRLAEADIARGGGIALG 634

Query: 756 KHMSAQRRLI----SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                 +R+       D  EI SLK+  +V G +  E  ++L L       ++       
Sbjct: 635 TRHGVVKRVQPEFPRSDGFEIISLKDGDAVVGVVDLEDDEDLDLA-----FITSDAQLLH 689

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK--------GTLI 863
             S   R   R   G+    ++    + +  A+      D + +            G+L 
Sbjct: 690 FPSSGVRPQGRGAGGVAGIKLAAGAHVLSFGAIDVTAPADVVTVAGSSSTLPLLQTGSLK 749

Query: 864 RVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
              + E     RAT G+        ++ ++    + 
Sbjct: 750 VTSLTEFPAKGRATAGMRCHRFLRGEDTLIGAWVVP 785



 Score = 42.2 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 65/241 (26%), Gaps = 13/241 (5%)

Query: 669 NRSGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSV---GV 724
           +R   +    +    +         E   +L T  G   R          G        V
Sbjct: 497 SRRTVLLEAAEKPAVVAGASLEVADEPCHVLLTGTGLIARVTGEEPVPREGPRGSHDVIV 556

Query: 725 RGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            G+      +V +             +         A          ++  L+ D    G
Sbjct: 557 AGVHSTTRSEVGVVTDRGRVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDLERDEHALG 616

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            I     +    +   I   +  G  KR    +F  S+    G     +   + +  +V 
Sbjct: 617 LI--RLAEADIARGGGIALGTRHGVVKRVQP-EFPRSD----GFEIISLKDGDAVVGVVD 669

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    D D    ++    L+  P + +R   R   GV     A    V+S   I  +   
Sbjct: 670 LEDDEDLDLA-FITSDAQLLHFPSSGVRPQGRGAGGVAGIKLAAGAHVLSFGAIDVTAPA 728

Query: 904 D 904
           D
Sbjct: 729 D 729


>gi|290890538|ref|ZP_06553613.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
 gi|290479934|gb|EFD88583.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
          Length = 811

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 252/738 (34%), Positives = 405/738 (54%), Gaps = 38/738 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  +   Y
Sbjct: 3   DESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG YHPHG+++IYDAL RM+Q+W +R  LI+  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L DL +  VD   N+D +  EP VL +R PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++  + ++ +P   L+ LM+ + GPDFPTG +I G  GIKNAY TGRG + +R
Sbjct: 183 PHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKVYLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    ++QI +TE+PY+VNK+ ++ +I E+   K +  I ++RD++ R+G  + 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+A+ IL+ L++ T LQ  ++ NM A+N  +P    L   L AF+ FR+EV+ R
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKEVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA+ R  ++ GL   ++ LDEVV  IR S + + A+  L+++           
Sbjct: 363 RTEFELKKAQARQEIVEGLIKMLSILDEVVATIRASESRKNAKENLIKK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S+ Q  AI+ L+L RLT      ++NE + L  +I E   IL
Sbjct: 412 ---------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
                L  +++ EL  ++ +   PRR++I   +    ++    I  ED++V ++  GY K
Sbjct: 457 KETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+A    G       + D+D+   L  V+T +S+  F++ G +   +V+ L   
Sbjct: 517 RASFRSYKATDDNG-------LTDDDYPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADT 569

Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   +S L + E +  +  F + + +   ++         V +N L+     
Sbjct: 570 KWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYY 629

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +    A+ +  ++ ++SV     +N  +++ T+ G   +FPI  I +     S G +  
Sbjct: 630 KKRASKAIAIKGKNVLVSVTFAASQNHLVVMATQKGYLYKFPIGEIALMTA-KSSGAKPA 688

Query: 728 SLAKGDQVISMAIVLHAD 745
            ++K D+++SM ++   D
Sbjct: 689 KISKKDRIVSMDLIDSED 706



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 17/237 (7%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  TK+G  +R     +   + +G     L   D  + +      + + + T  G
Sbjct: 502 NEDVIVQITKNGYAKRASFRSYKATDDNG-----LTDDDYPVYLAKVNTLSSLFIFTNKG 556

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             +   +  +        VG    + IS    D+++ + +    D        +    + 
Sbjct: 557 NLIYRQVYEL-ADTKWKDVGEHLSQEISGLAEDEIV-IKVFDFKDLKQTGTFVFTSSDAF 614

Query: 761 QRRLISGDTEEITSLKN----DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +++           K       +++G            +   ++  ++KG+  +    +
Sbjct: 615 VKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVTFAASQNHLVVMATQKGYLYKFPIGE 674

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             +      G +   +SK +    +V++  ++  D ++L+SD+G    +   EI I+
Sbjct: 675 IALMTAKSSGAKPAKISKKDR---IVSMDLIDSEDLMVLMSDRGHSKIINPLEIPIS 728


>gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
 gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
          Length = 771

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 258/767 (33%), Positives = 385/767 (50%), Gaps = 71/767 (9%)

Query: 1   MTEHIISSDEE-EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+     D+E    G  ++++T   + +YL YAI+V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MTDQANLFDQEAPADGGEALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+GQGNFGS
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++   TVDF+PNYDGS +EP +L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT IP+HNL EV    VA+I NP +  + LM I+ GPDFP G  I+   T I 
Sbjct: 181 SGIAVGMATEIPSHNLHEVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA- 297
           + Y++GRGS+ +R    IE  +  + Q VVTE+P+  +   +LE+I EL   K  +    
Sbjct: 241 DIYSSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKS 300

Query: 298 -----------------DLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES R     ++   +  + D     N L  +TSL++  S
Sbjct: 301 LSPEQLALKQTVLSMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVS 360

Query: 339 VNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V + G  +P + +L  IL+ ++ FR   + RR+++ L K  DR H+L G    + N+
Sbjct: 361 INLVMIGGDGRPRQKSLGDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V++IIR S  P+ A                                   LSE Q   I
Sbjct: 421 DKVIKIIRESDEPKPA-----------------------------LMDAFRLSERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+ + + +    RR
Sbjct: 452 LEIRLRQLARLETIKIQQELAELRNEKTTLQDLLDNPSSMKRLVIKEIEADEKQFGDARR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I E       E  ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 TLI-EVAEKASVETKVIDEPVTVVISQKGWV--------RARTGHGHDAAQFTFKAGDTL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            + F   T  S+L F S G +Y   V  LP    +  G  +  ++ L  G RI      P
Sbjct: 563 YNTFECRTVDSLLVFGSNGRIYSVPVSALPGA--RGDGVPITTLVELASGSRILHYFAGP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDI 696
            D      + ++ A+  G     K  D +   R GK  + LD  DE +         + I
Sbjct: 621 AD------VTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDEPLAPCPVTAGASAI 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
              ++ G+ + F I  I+        GV  + L K +++++   +  
Sbjct: 675 ACLSEKGRLLVFGIDEIKSLTA-GGRGVILMDLEKNEKLLAAQAISQ 720



 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-II 854
            +  +L  S  G+G    S D     R GK          ++    +A  PV      I 
Sbjct: 621 ADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITL-----DDGDEPLAPCPVTAGASAIA 675

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +S+KG L+   ++EI+  +   +GV++    K+E++++ + I 
Sbjct: 676 CLSEKGRLLVFGIDEIKSLTAGGRGVILMDLEKNEKLLAAQAIS 719


>gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
 gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
          Length = 749

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 406/805 (50%), Gaps = 74/805 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPDFPT A VI  +  + 
Sbjct: 177 TGIAVGMATDVPPHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADLL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+ +R V  +E        I+VT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KIYESGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       AD ++  L+  T L+S + VN   +    KP+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR ++ L+K   R H+L GL IA  NLDEV+RIIR    P+    
Sbjct: 352 TLLSEWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            L+EVQ   IL+ RL +L  L    IR 
Sbjct: 410 ---------------------------LMEAFGLTEVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E ++ L +L S ++L  ++++E++   ++    RR+ IV       + + + +
Sbjct: 443 EQDELAKEREKLLALLGSEAKLKKLVRKEIIEDAEKYGDDRRSPIVARAEARALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     +M  PED     +   V A+ 
Sbjct: 555 STGRSYSLAAHSLP--SARGQGEPLTGRLTPPPGATFECVM-LPED-----SALYVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  ++++ +  T  +++ +   T  G+ + F ++
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLEDDWLAAVTTEGRLLLFKVT 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ ++   VL + A           + A +R ++  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGASL--------VLQAGKRTLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQEL 793
            +++   K +    GN      Q +
Sbjct: 719 ADDLEHYKGERGRRGNKLPRGFQRV 743



 Score = 46.1 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L       +  S+ G+G      D +  N++GK + +           +VA  PV 
Sbjct: 590 ECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVVAPKPVT 644

Query: 849 --DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             ++D +  V+ +G L+   V ++    +  KG  I      ERV S
Sbjct: 645 NLEDDWLAAVTTEGRLLLFKVTDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 801

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 254/794 (31%), Positives = 433/794 (54%), Gaps = 43/794 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I ++S+   + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  +++ Y K
Sbjct: 5   QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ R++Q+W LR  LI+ QGN GS+DGD  AA RYTE 
Sbjct: 65  SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L+ + K TVD+  N+D + +EP+VL +  PN+L+NG  GI+ G AT IP H
Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           + GEV+D  +  I      +D L+  ++GPDFPTG V+ G  GIK A+ TGRG ++IR  
Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGGVVQGLDGIKKAFETGRGKVIIRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G R+QI++TE+PY+VNKA +++++ EL  ++++  +A++RDE+DR G RVVIE
Sbjct: 245 ATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ +L+   + T LQ  ++ NMVA++   P +  ++ +L A+++  ++VV+RRT
Sbjct: 305 LKKEADAEGVLHFYLKQTDLQIAYNYNMVAIHERTPRQMGVLALLDAYLSHVKDVVIRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L +A+ R  V+  L  A++ LDE + +IR + N   A+ +L++R             
Sbjct: 365 SFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIER------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  A++ L+L RLT     ++++E   L  EI     IL+ 
Sbjct: 412 -------------FSFTDRQAEAVVMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILND 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
                 +I +EL  +K+++   RR+ +   + +  ++ E  I  E+ +V VS  GY+KR 
Sbjct: 459 EKTRNRLIIKELTVLKEQVADKRRSTVEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRS 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  + A            M+++D +       T   V+ ++  G      V +LP    
Sbjct: 519 SMRSFGATN------DLPEMKEQDRLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N++ L+ G+RI ++      + +    + +F T+ G V+R+KLSD+    +S
Sbjct: 573 KDGGQHVANLVPLDPGDRILSVDLVRTFDETS---HCLFVTRQGMVKRSKLSDYNAQRKS 629

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                ++L + DE+L  +  T +  + LTT+ G  + F    + V   R + GV+ I+L 
Sbjct: 630 KPLQGVRLRADDEVLYAKISTGQEQLFLTTQHGFGLWFTEDDVPVVGVR-AAGVKAINLR 688

Query: 731 KGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             D V++ AI      +     +R    K   A +  +S      T L  D   + +   
Sbjct: 689 DQD-VVAGAIGFKQAPNIVLLTQRGALKKMRLADQFQVSNRALRGTQLLRDLKSKPHQVA 747

Query: 788 ERCQELKLKEQFIL 801
                 + KE  ++
Sbjct: 748 ALIDVTQAKELILI 761



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 77/250 (30%), Gaps = 62/250 (24%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +VF +K+G ++R+ +  F   N       ++  +D +L        + +++ T  G  +
Sbjct: 505 TMVFVSKNGYIKRSSMRSFGATN----DLPEMKEQDRLLYQGQAMTTDHVIVWTVQGNYL 560

Query: 707 RFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             P+            G    +L     GD+++S+ +V   D                  
Sbjct: 561 LIPV-HQLPDTKWKDGGQHVANLVPLDPGDRILSVDLVRTFDETSHC------------- 606

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                                L V+ +G  KR+   D+    R 
Sbjct: 607 -------------------------------------LFVTRQGMVKRSKLSDYNAQ-RK 628

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            K ++   +   +E   ++        +Q+ L +  G  +    +++ +      GV   
Sbjct: 629 SKPLQGVRLRADDE---VLYAKISTGQEQLFLTTQHGFGLWFTEDDVPVVGVRAAGVKAI 685

Query: 884 STAKDERVVS 893
           +    + V  
Sbjct: 686 NLRDQDVVAG 695



 Score = 38.8 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 88/254 (34%), Gaps = 28/254 (11%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC-VRFPISAIRV 715
           +RR          R   ++        +++  +   E   L+ +   +   +  +     
Sbjct: 361 IRRTSFDLEQAKRRQEVVSA-------LMTAISVLDETLALIRSASNKSEAKDKLIERFS 413

Query: 716 FAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           F  R +  V   +   L   D V         + +       +     + RLI  +   +
Sbjct: 414 FTDRQAEAVVMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILNDEKTRNRLIIKELTVL 473

Query: 773 TSLKNDSSVEGNISEE-----RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                D       +E      + + +   E+ ++ VS+ G+ KR+S   F  +N      
Sbjct: 474 KEQVADKRRSTVEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRSSMRSFGATN------ 527

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
              D+ ++ E   L+        D +I+ + +G  + +PV+++        G     +  
Sbjct: 528 ---DLPEMKEQDRLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKWKDGGQHVANLVP 584

Query: 885 TAKDERVVSVERIR 898
               +R++SV+ +R
Sbjct: 585 LDPGDRILSVDLVR 598


>gi|318042970|ref|ZP_07974926.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0101]
          Length = 834

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 274/758 (36%), Positives = 419/758 (55%), Gaps = 51/758 (6%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D  +++ I  + +  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  
Sbjct: 11  PDPSDDRRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTP 70

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA
Sbjct: 71  DRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDDPPAA 130

Query: 128 ERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL   A+  + D++G DTVDF PN+DGS QEP VL A+ P +++NG  GIAVGM
Sbjct: 131 MRYTETRLAPIANEAMLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLILNGCTGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEVVD  +A++  PD+  + L+E++ GPDFPTG  +L  +G+++ Y TGRG
Sbjct: 191 ATNIPPHNLGEVVDALIALVRKPDLSDEKLLELVPGPDFPTGGEVLTGSGVRDTYLTGRG 250

Query: 247 SIVIRGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           SI +RGV+HIE+    + +     +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RD
Sbjct: 251 SIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIADIRD 310

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR+G RVV+EL+R A+ + +L +L R T+LQS +   ++AL   KP + TL  +L+ F
Sbjct: 311 ESDREGMRVVVELRRDANPETVLGELQRRTALQSNYGAILLALVHGKPIQLTLRQLLQEF 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + +RE  ++RRT++ L +A DR  V+ GL  A+  L +V+ +I  +P+  +AR  L    
Sbjct: 371 LDYRELTLIRRTRHALKRAEDRLEVVEGLITALNALPKVIEMITAAPDAASARASLQVH- 429

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + L+E Q  A+L + L RLTGL ++ +R E   L 
Sbjct: 430 -------------------------LDLNERQADAVLAMPLRRLTGLEQESLRKEAEDLR 464

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            E      +L  R  LL  +  E  ++K    TPRRTR+VEG  ++  +    +      
Sbjct: 465 QERARLRHLLDERPALLDAMVAEFKALKKRFATPRRTRLVEGGDELVAQRTAAQRPNTEV 524

Query: 542 VSHLGYVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTS 588
           +    +           Q  G          G+          D       +  +S   +
Sbjct: 525 LRQRAFEGLPSDGRLVIQADGQVKVVGPQLLGRLHLDEPAPLGDNPSPARLILPISEKPA 584

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F+  G V   + W      P    K L   ++   GE++  ++P P  E +     V
Sbjct: 585 LLAFTDAGRVALLR-WEFAGQQPGTLEKFLPEGMN---GEQVVQLLPLPSGEQA-AGASV 639

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              +  G  +R  + DF +++      +KL     +  V  C  + ++++ +  G+ +R 
Sbjct: 640 GLLSSDGRFKRLPIEDFQELSGRATSVLKLKDGVTLQRVVLCRDDEELVVASSTGRMLRL 699

Query: 709 PISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            ++       GRN+ G   + L  G+ V+  A V    
Sbjct: 700 AVNDANLPVMGRNAQGPVLLRLLPGESVVGAAGVSPDG 737



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +     +  +S  G  KR    DF+ +S R      AT V K+ +   L  V    D+++
Sbjct: 633 QAAGASVGLLSSDGRFKRLPIEDFQELSGR------ATSVLKLKDGVTLQRVVLCRDDEE 686

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ S  G ++R+ VN+  + +  R  +G V+      E VV    +   
Sbjct: 687 LVVASSTGRMLRLAVNDANLPVMGRNAQGPVLLRLLPGESVVGAAGVSPD 736


>gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2]
 gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
 gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
          Length = 754

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 401/805 (49%), Gaps = 74/805 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KVYETGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L++ + VN+  +    KP+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+    
Sbjct: 352 QLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LSEVQ   IL+ RL +L  L    IR 
Sbjct: 410 -LMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L  E K    +L S ++L  ++++EL+   +     RR+ IV       + + + +
Sbjct: 443 EQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDD-----DALFVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ ++   VL A A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQEL 793
            +++   K +    GN      Q +
Sbjct: 719 GDDLEHYKGERGRRGNKLPRGFQRV 743



 Score = 46.1 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +          A+VA  PV 
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGSAVVAPRPVR 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D   D +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DVEQDWLAAVTTEGRLLLFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
 gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
          Length = 749

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/805 (30%), Positives = 407/805 (50%), Gaps = 74/805 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E + GPDFPT A VI  +  + 
Sbjct: 177 TGIAVGMATDVPPHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADLL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KLYETGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       AD ++  L+  T L+S + VN   +    KP+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR ++ L+K   R H+L GL IA  NLDEV+RIIR   +P+    
Sbjct: 352 TLLSEWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                         T  L++VQ   IL+ RL +L  L    IR 
Sbjct: 410 ---------------------------LMETFGLTDVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E ++ L +LSS ++L  ++++E+L   ++    RR+ IV       + + + +
Sbjct: 443 EQDELAKEREKLLALLSSEAKLKKLVRKEILEDAEKYGDDRRSPIVARAEAKALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     +M  PED     +   V A+ 
Sbjct: 555 STGRSYSLTAHSLP--SARGQGEPLTGRLTPPPGATFECVM-LPED-----SALYVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  ++++ +     +++ +   T  G+ + F ++
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLEDDWLAAVTTEGRLLLFKVT 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ ++   VL + +           + A +R ++  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGSSL--------VLQAGKRTLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQEL 793
            +++   K +    GN      Q +
Sbjct: 719 ADDLEHYKGERGRRGNKLPRGFQRV 743



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L       +  S+ G+G      D +  N++GK +             +VA  PVN
Sbjct: 590 ECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLTLP-----NGAKVVAPKPVN 644

Query: 849 --DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             ++D +  V+ +G L+   V ++    +  KG  I      ERV S
Sbjct: 645 NLEDDWLAAVTTEGRLLLFKVTDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
 gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
          Length = 754

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 401/805 (49%), Gaps = 74/805 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KVYETGRGSVRMRAVYRVEDGD-----IVIQALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L++ + VN+  +    KP+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+    
Sbjct: 352 QLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LSEVQ   IL+ RL +L  L    IR 
Sbjct: 410 -LMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L  E K    +L S ++L  ++++EL+   +     RR+ IV       + + + +
Sbjct: 443 EQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDD-----DALFVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ ++   VL A A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQEL 793
            +++   K +    GN      Q +
Sbjct: 719 GDDLEHYKGERGRRGNKLPRGFQRV 743



 Score = 45.7 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +          A+VA  PV 
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGSAVVAPRPVR 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D   D +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DVEQDWLAAVTTEGRLLLFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|303286821|ref|XP_003062700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456217|gb|EEH53519.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1082

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 304/998 (30%), Positives = 472/998 (47%), Gaps = 122/998 (12%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             ++   + I    ++ E   SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++ 
Sbjct: 54   DEDATNERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDS 113

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             K + KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+S+   L++G GNFGS+D DPPAA
Sbjct: 114  KKPFKKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAA 173

Query: 128  ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
             RYTECRL+  A   LL D+  D VDF   +DGS  EP VL AR PN+L+NG  GIAVGM
Sbjct: 174  MRYTECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGM 233

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRT---GIKNAYA 242
            AT+IP HNL EV D       +PD   LD L++++  PDFPT  +I+      G ++ YA
Sbjct: 234  ATSIPPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYA 293

Query: 243  TGRGSIVIRGVSHIEKTSGD--------REQIVVTEIPYQ-----------------VNK 277
            TG+GS+ +RG +HIE+            +  +++T IPYQ                  NK
Sbjct: 294  TGKGSVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNK 353

Query: 278  AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
            A++  +IA+LV  +++  + D+RDESDR G RVV+E++R    + +  QLY  T LQ   
Sbjct: 354  ASLCGQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRV 413

Query: 338  SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
            SVN+V L G +P+  TL+ I++ F+ FR E + RR ++ L+KA  R HV+ G     A  
Sbjct: 414  SVNLVGLIGREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAP 473

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
            D VV  IR + +   A++ L +                             LS+ Q+ A+
Sbjct: 474  DAVVAAIRAAKDGPEAQKTLQE-------------------------APFSLSKEQSEAV 508

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            L + L RLTGL  D +R E   L  ++++   +LS R+ ++  +  E   ++D+    R+
Sbjct: 509  LAMPLRRLTGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDKYGVERK 568

Query: 518  TRIVEGLLD---------------------------------------MEDEDCIVREDM 538
            T I                                             M      +  D 
Sbjct: 569  TLIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADN 628

Query: 539  VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            ++ ++  GY+KR+   ++  Q +G  G+ G  MR  D VT +   +   +VLFF+  G V
Sbjct: 629  LIVMTGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRV 688

Query: 599  YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGN 656
            Y  + + +P  S  A G     +L L +GE IT ++P        +N   ++V  T  G 
Sbjct: 689  YAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTARGV 748

Query: 657  VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            V++  +S+F  INR+GK A+ L   D +  VE     + I++    G  + F + +IR  
Sbjct: 749  VKKTPISEFANINRAGKRALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSIRAQ 808

Query: 717  AGRNSVGVRGISLAKGDQVIS-----------MAIVLHADADYDERICYMKHMSAQRRLI 765
            + R   GV+ +   +     +           M     A A+  E   Y     ++    
Sbjct: 809  S-RIGSGVKAMKFREASAGATEKKPKKPPAAHMLFAADARANAPEGTSYNMAEVSKMWRE 867

Query: 766  SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              D E+       + ++     E   E K          +             +   +G 
Sbjct: 868  LSDEEKAPYEVKAADLKEKARRENDAEKKSAPAADGAADDGAADDDDDGDALPVL-VAGM 926

Query: 826  GIRATDVSKINEIGALVAV------------FPVND-NDQIILVSDKGTLIRVPVNEIRI 872
             I  +DV    E+                   P ++    ++LV+ +G   R+ V + R 
Sbjct: 927  SIVPSDVVAAFELATESDEAGDDDDAGTGDEKPADECGAMVLLVTSEGQGKRISVGQFRQ 986

Query: 873  ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              R   G       +  R+ ++        + EA   E
Sbjct: 987  KGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAE 1024



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 117/371 (31%), Gaps = 47/371 (12%)

Query: 540  VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            V ++  G VK+ P+S +    R GK    + ++  D +  + +V     ++     G V 
Sbjct: 741  VMLTARGVVKKTPISEFANINRAGK--RALGLQKGDRLKHVELVRDGDGIMVAGVDGMVL 798

Query: 600  KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
               +  +   S    G   +     + G          +        +++FA       R
Sbjct: 799  HFSMDSIRAQSRIGSGVKAMKFREASAG-------ATEKKPKKPPAAHMLFAADA----R 847

Query: 660  NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                +    N +    M  +  DE  +       +         +  R   +  +     
Sbjct: 848  ANAPEGTSYNMAEVSKMWRELSDEEKAPYEVKAADL------KEKARRENDAEKKSAPAA 901

Query: 720  NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            +                        D D  + +  +    +          E+ +  +++
Sbjct: 902  DGA---------------ADDGAADDDDDGDALPVLVAGMSIVPSDVVAAFELATESDEA 946

Query: 780  SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              + +      +        +L V+ +G GKR S   FR   R G G +A  + + + + 
Sbjct: 947  GDDDDAGTGDEKPADECGAMVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLA 1006

Query: 840  ALVAVFPVND-----------NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAK 887
            A+  +  V+             +++I+ S  G L R  V E+R    R  KGV +     
Sbjct: 1007 AMC-ITGVDPALREAGDAECVAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLND 1065

Query: 888  DERVVSVERIR 898
             + V  +  + 
Sbjct: 1066 GDTVRDITLLP 1076


>gi|225388932|ref|ZP_03758656.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
 gi|225045014|gb|EEG55260.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
          Length = 741

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/759 (34%), Positives = 415/759 (54%), Gaps = 29/759 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K 
Sbjct: 1   KILKTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+ MGKYHPHG+++IY+ L  ++Q++   + L++G GNFGS++GD  AA RYTE R
Sbjct: 61  ARIVGDTMGKYHPHGDSSIYETLVVLSQEFKKGMTLVDGHGNFGSIEGDGAAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K A  +       TVDF PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP HN
Sbjct: 121 LEKFAEEVYLKDLDKTVDFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD   A ID+PDI  + LME++ GPDFPTG +I  ++ +   Y TG G I +RG  
Sbjct: 181 LGEVVDAVDAYIDDPDISTEKLMELMPGPDFPTGGIIANKSDLPAIYETGSGKIKLRGKM 240

Query: 255 HIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            +E      D++++V+TEIPY +        L  +A+LV  K++ D+ D+ ++S+++G R
Sbjct: 241 EVELGKRKADKDKLVITEIPYTMIGAGINKFLMDVADLVESKKLTDVVDISNQSNKEGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL++ A  + I N LY+ T L+  F VNM+A+ G +PE  +L GILK F+ F+ +  
Sbjct: 301 IVLELRKDADIEKIRNILYKKTKLEDTFGVNMLAIAGGRPETLSLRGILKNFLDFQYQNT 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            ++ + LL K R+R  V  GL  A   +D ++ ++R S N + AR  L     +    K 
Sbjct: 361 EKKYRVLLQKERERQEVQEGLIAACDCIDLIIAVLRGSKNLKDARACLTTGDVSNIKFKT 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                D           ++ +E Q  AILE+RL +L GL    +  E      +I     
Sbjct: 421 PGFEADAK--------KLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIARYEK 472

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+ +  +IK +L ++K E   PR+T+I +G   + DE  +  +++V  +   GY K
Sbjct: 473 ILGSRATMNQVIKDDLEAIKKEFALPRKTQIEDGPEAVYDETAVQVQEVVFVMDRFGYCK 532

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            +  + Y   R                   +        +L F+  G +++ K   +P G
Sbjct: 533 LLDKATYERNRETVDTEQ----------VHVVRCLNTDKILLFTDTGNLHQLKAMDVPAG 582

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  + N+   + G+     +    D        +VFAT+   V++    +F   N
Sbjct: 583 KLRDKGTPIDNLSKFDGGKETIVYLA---DSRELKGKVLVFATRTAMVKQVPAEEFETNN 639

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+   A KL   D ++SV     + +++L T  G  +RF +  I V   +N+ GVRGI L
Sbjct: 640 RT-VAATKLQDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVM-KKNARGVRGIKL 697

Query: 730 AKGDQVISMAIVLHAD-ADYDERICYMKHMSAQRRLISG 767
           A+G+++ ++ ++      DY  +  +M  +   +R   G
Sbjct: 698 ARGEELEALYLLGEDPVVDYKGKEVHMNRLKLAKRDGKG 736



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 70/165 (42%), Gaps = 10/165 (6%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I+L  D     ++  M   + + R      + ++           +++ R    +LK + 
Sbjct: 562 ILLFTDTGNLHQLKAMDVPAGKLRDKGTPIDNLSKFDGGKETIVYLADSR----ELKGKV 617

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++  +     K+  + +F  +NR          +K+ +  ALV+V PV    +++L +  
Sbjct: 618 LVFATRTAMVKQVPAEEFETNNR------TVAATKLQDGDALVSVTPVEGQTEVVLRTSN 671

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           G  +R  + EI +  +  +GV     A+ E + ++  + E  +VD
Sbjct: 672 GVFLRFMLEEISVMKKNARGVRGIKLARGEELEALYLLGEDPVVD 716


>gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 754

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 399/805 (49%), Gaps = 74/805 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V   E        IV+  +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KVYETGRGSVRMRAVYRFEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L++ + VN+  +    KP    L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+    
Sbjct: 352 QLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LSEVQ   IL+ RL +L  L    IR 
Sbjct: 410 -LMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L  E K    +L S ++L  ++++EL+   +     RR+ IV       + + + +
Sbjct: 443 EQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDD-----DALFVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ ++   VL A A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQEL 793
            +++   K +    GN      Q +
Sbjct: 719 GDDLEHYKGERGRRGNKLPRGFQRV 743



 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +          A+VA  PV 
Sbjct: 590 ECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGSAVVAPRPVR 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D   D +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DVEQDWLAAVTTEGRLLLFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 788

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 316/784 (40%), Positives = 450/784 (57%), Gaps = 45/784 (5%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA + GEV+  YHPHG++++YD L R+AQ W +R  LI+ QGNFGSVDGD  AA RYTEC
Sbjct: 1   CAGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTEC 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+  A  LL D+ +DTVDF PNY+ S  EP VL +  PN+L+NG  GIAVGM TNIP H
Sbjct: 61  RLRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPH 120

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++   VAV+DNP   LD L +II+GPDFPTG VI GR GI +   TGRG + +RG 
Sbjct: 121 NLHELITASVAVLDNPATTLDELCQIIKGPDFPTGGVIAGRDGIDSYLRTGRGIVRMRGR 180

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E+T    EQI++TEIPY VN+A ++ +IAELV EK+I  I D+RDESD     +VIE
Sbjct: 181 AITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESDENTR-IVIE 239

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG  +  ILNQLY+ T+L+S F V ++AL+  +P++  +  +L  ++  R +V+ RRT
Sbjct: 240 LKRGEQSSPILNQLYQKTALESSFGVILLALDKRRPKQMNIRELLDCYIDHRRDVITRRT 299

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +A DRAH+L G  IA+ NLD+ VRIIR S + + A+ +LM +             
Sbjct: 300 RFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAK------------- 346

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE QT +ILELRL +LTGL RD I  E   L   I+E   IL +
Sbjct: 347 -------------YPLSERQTDSILELRLYQLTGLERDKIEAEYLELLKLIEELKVILEN 393

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL  +IK+ELL +K++    R+T I   L D   ED I  E  V+TVSHLG++KR P 
Sbjct: 394 DWRLREVIKEELLVMKEKYGDARKTEITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPS 453

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR+Q+RGGKG  G    DEDFV  LF  STH  ++F +S G    +KV+ +P G   A
Sbjct: 454 ADYRSQKRGGKGVIGTETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTA 513

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
           +GK++ + L LN+GE+I  ++   +  S   + Y+V AT+ G +++  LSD++   R+  
Sbjct: 514 KGKSVSSFLRLNEGEKIAAMLCLQDFAS---DRYLVMATRRGVIKKTALSDYLGTTRNLE 570

Query: 672 -GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV------FAGRNSVGV 724
            G I + L   D I+     T  ++I+L +  G  VRF               GR + GV
Sbjct: 571 GGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLAVRFRERDPETGEELFRATGRATGGV 630

Query: 725 RGISLA-KGDQVISMAIVLHADAD--YDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+      DQ+  + +V H        E    ++      RLI+     + ++      
Sbjct: 631 TGMRFKLDNDQLDVIEVVDHTAKFLVASEAGLGVRTRFEDYRLINRGGRGVWAITLPDDN 690

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             NI+     +       I+ ++ KG   R      R  NR GKG++   +++ +++ ++
Sbjct: 691 SINIAGALSVK---DTDEIMLLTTKGQSVRCPVNTIREVNRGGKGVKLLTLAEGDKLLSI 747

Query: 842 VAVF 845
             V 
Sbjct: 748 AKVV 751



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 16/210 (7%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-----AKGDQVISMAIVLHADADYDE 750
           I+  +   Q  +  + A    + R +  +  + L      + D++ +    L      +E
Sbjct: 329 IIRASASRQEAKEKLMAKYPLSERQTDSILELRLYQLTGLERDKIEAEY--LELLKLIEE 386

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKG 807
               +++    R +I  +   +     D   + + G + + R +++   E  ++TVS  G
Sbjct: 387 LKVILENDWRLREVIKEELLVMKEKYGDARKTEITGALGDFRMEDVIPNEGCVITVSHLG 446

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           F KRT S D+R   R GKG+  T+    + +  L   F  + +D I+ V+  G  +   V
Sbjct: 447 FIKRTPSADYRSQKRGGKGVIGTETYDEDFVEHL---FTASTHDYIMFVTSTGQCLAKKV 503

Query: 868 NEIRIASRATKGVVI---FSTAKDERVVSV 894
            ++    R  KG  +       + E++ ++
Sbjct: 504 YDVPEGPRTAKGKSVSSFLRLNEGEKIAAM 533


>gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
 gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
          Length = 956

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 299/949 (31%), Positives = 476/949 (50%), Gaps = 90/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I +  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G 
Sbjct: 1   MAKKIVIP---KDNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ ++ R+ +I+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKNSMLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+    + +I
Sbjct: 238 YETGEGRVTLRAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+  + DV+   L  LY+ T LQS  S NMVAL   KP+   
Sbjct: 298 TDIRDESDRNGTRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVALAEGKPKTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +LK +V  ++EVV R+TK  L  A  R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKAMLKYYVEHQKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM++                             +++Q  AILEL L +LTGL     
Sbjct: 418 RENLMEK--------------------------FSFTDIQAEAILELMLYKLTGLEIVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
             E   L   I +   ILSS   LL +IK+EL+ VK+  +  RRT I+E       + E+
Sbjct: 452 EKEYKELEKLINKLKKILSSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+VVT+S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++  
Sbjct: 512 IIVEEDVVVTLSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCL 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVF 650
            +  G +Y+ KV  +P    + +G  L  I+ +++  E I       +  +  +   ++F
Sbjct: 569 VTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIDDFTAQKD---MLF 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVR 707
            T  G +++  L D    N +  +A+KL   + +L  +      +E    + T+ G    
Sbjct: 626 ITDSGYMKKTTL-DKFNTNYTKIMALKLKKEESLLKADLVDRTREEKFFNIKTQKGLSFN 684

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------ADYDER 751
               ++     RN VG +   +   D +  +    + +                +D  E 
Sbjct: 685 IEEPSLEAV-DRNIVGYKLFDILPNDSIKQVDFCDNYEYKSFYVNISKDGLITISDLKEN 743

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-----------------LK 794
             ++   +   + I     E  +    + +  NI E+                       
Sbjct: 744 KSHVSLFTDSSKTIVLFDSEGKAYYIPAFMLQNIKEKGINISAFTGDKISLLNAISTFRF 803

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            ++  I  +S+KG  KRT   + +I   S +  +       ++   LV++      ++  
Sbjct: 804 EEDISIYFISKKGLIKRTVLSELKIEGNSAQVYKF-----KDKGDELVSILIKEHGEEKN 858

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           II++++K  +IR     +    +   GV   S    ++V+    I E++
Sbjct: 859 IIIITEKAMVIRFKSEAVNPMGKMASGVTGISLKDLDKVILALIIDEND 907



 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 11/190 (5%)

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           +++      LF  S+ T ++ F S G  Y    + L     + +G  +        G++I
Sbjct: 740 LKENKSHVSLFTDSSKT-IVLFDSEGKAYYIPAFMLQNI--KEKGINISAF----TGDKI 792

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET- 689
           + +           ++ + F +K G ++R  LS+      S ++    D  DE++S+   
Sbjct: 793 SLLNAISTFR-FEEDISIYFISKKGLIKRTVLSELKIEGNSAQVYKFKDKGDELVSILIK 851

Query: 690 -CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +E +I++ T+    +RF   A+     + + GV GISL   D+VI   I+   D   
Sbjct: 852 EHGEEKNIIIITEKAMVIRFKSEAVNPMG-KMASGVTGISLKDLDKVILALIIDENDTGK 910

Query: 749 DERICYMKHM 758
            +     K  
Sbjct: 911 IKIKTKSKDK 920


>gi|229916009|ref|YP_002884655.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
 gi|229467438|gb|ACQ69210.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
          Length = 801

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/725 (34%), Positives = 405/725 (55%), Gaps = 39/725 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I ++S+   + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 5   QHILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHHEGNTNDKPYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ R++QDW LR  LI+  GN GS+DGDP AA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRYPLIDMHGNNGSMDGDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L  + K+TVD+ PN+D S +EP+VL +  PN+L+NG  GI+ G AT IP H
Sbjct: 125 RLSKIAGVMLTSIAKNTVDYTPNFDDSTEEPLVLPSLLPNLLMNGTTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  +A +          +E + GPDFPTG  ++G+ GI  A+ TG+G ++IR  
Sbjct: 185 NLTEVLNLAIARLKGQVDIAKDALEYVTGPDFPTGGTVMGKDGILKAFETGKGKVIIRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           S IE+  G REQI +TE+PY+VNKA +++K+ EL  +K++  +A++RDE+DR G RVVIE
Sbjct: 245 SEIEQLKGGREQITITELPYEVNKANLVKKMEELRLDKKVEGVAEVRDETDRTGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ +L+   ++T LQ  ++ NMV++    P++  +I I+ A++   EEVV RRT
Sbjct: 305 LKKEADAEGVLHFFLKHTDLQLAYNYNMVSIVNRTPKQMGIIPIIDAYLKHVEEVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L +A+ RA ++  L  A++ LDE + +IR + +   A+++LM+R             
Sbjct: 365 TFELEQAKKRAEIVDALEQAISVLDETLELIRSAKDKADAKKKLMER------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  A++ L+L RLT     +++ E  +L  EI    +IL  
Sbjct: 412 -------------FSFTERQAEAVVMLQLYRLTNTDIVELQKEAKALQKEIARLSNILDV 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I +EL +++DE    RR+ I   + +  ++ E  I  E+ +V VS  GYVKR 
Sbjct: 459 DATKRKLIVKELTALRDEFGDDRRSVIESEVEELKLKTEVMIAVEETMVFVSRDGYVKRA 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y     G        M+++D         T   +L +++ G      V ++P    
Sbjct: 519 SMRSY-----GASSDVLPEMKEKDRPLLTTQAMTTDHLLVWTNKGSYLLIPVHQIPESKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N++ +  GE++ +       ++   + + +F TK G V+R  L D+    +S
Sbjct: 574 KDAGQHVANLVPIE-GEQVISADVVSTFDT---DAHCLFVTKDGMVKRTPLRDYDAQRKS 629

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+KL   DE++          + L ++ G  + F    + V   R + GV+ ++L 
Sbjct: 630 KPLMALKLKGDDEVVFAGISDGPGQLFLVSERGYGLWFKEDDVPVVGQR-AAGVKAMNLK 688

Query: 731 KGDQV 735
            GD V
Sbjct: 689 DGDLV 693



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 60/248 (24%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +VF ++ G V+R  +  +   +    +  ++  +D  L        + +L+ T  G  +
Sbjct: 505 TMVFVSRDGYVKRASMRSYGASSD---VLPEMKEKDRPLLTTQAMTTDHLLVWTNKGSYL 561

Query: 707 RFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
             P+      +     G    +L   +G+QVIS  +V   D D                 
Sbjct: 562 LIPV-HQIPESKWKDAGQHVANLVPIEGEQVISADVVSTFDTDAHC-------------- 606

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                               L V++ G  KRT   D+    R  
Sbjct: 607 ------------------------------------LFVTKDGMVKRTPLRDYDAQ-RKS 629

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           K + A  +   +E   +V     +   Q+ LVS++G  +    +++ +  +   GV   +
Sbjct: 630 KPLMALKLKGDDE---VVFAGISDGPGQLFLVSERGYGLWFKEDDVPVVGQRAAGVKAMN 686

Query: 885 TAKDERVV 892
               + V 
Sbjct: 687 LKDGDLVA 694



 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 62/161 (38%), Gaps = 16/161 (9%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D D  +R   +K ++A R     D   +   + +          + + +   E+ ++ VS
Sbjct: 457 DVDATKRKLIVKELTALRDEFGDDRRSVIESEVEELKL------KTEVMIAVEETMVFVS 510

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+ KR S   +             ++ + +              D +++ ++KG+ + 
Sbjct: 511 RDGYVKRASMRSY-----GASSDVLPEMKEKDRPLLTTQAMT---TDHLLVWTNKGSYLL 562

Query: 865 VPVNEIRIASRATKGVVIFST--AKDERVVSVERIRESEIV 903
           +PV++I  +     G  + +    + E+V+S + +   +  
Sbjct: 563 IPVHQIPESKWKDAGQHVANLVPIEGEQVISADVVSTFDTD 603


>gi|225570592|ref|ZP_03779617.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
 gi|225160605|gb|EEG73224.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
          Length = 746

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 411/763 (53%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   QDSQIIRTEYSDLMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K        DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKLTQDAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD   A + N +I    LM  ++GPDFPTG +++ +  + + Y +G G I I
Sbjct: 182 PPHNLGEVVDAVKAYMKNDEISTKQLMRYMKGPDFPTGGIVVNKDDLPDIYESGAGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG    E   G ++++VVTEIPY +        L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVETEDMKGGKKRLVVTEIPYTMIGAGIGKFLNDVCALVESKKTNDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELK+GA A+ + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIELKKGADAENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKQIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K  D+  +  GL  A   +D ++ I+R S + + A+  L +        
Sbjct: 362 LATRKYKNLLAKELDKKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTKGVTENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I        +      +  +E Q  AILE+RL +L GL  + ++ E       I   
Sbjct: 422 KTSI--------SKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHEETLEHIASY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L  +K E    RRT +      + +E+ I  +++V  +   GY
Sbjct: 474 EDILNNYDSMSEVIMEDLDRIKKEYGRSRRTAVENAEAAVFEENKIEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  +VY   +      +            +        +  F++ G +++ KV  LP
Sbjct: 534 AKTVDTAVYERNKEAADAEN----------RYVLSCMNTGKICLFTNTGKMHQIKVLDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G+ + N+ + +  +     +    D        ++F TK G V++   S+F Q
Sbjct: 584 YGKFRDKGQPIDNVSNYDSTQETIVYLC---DAQQMQIARLLFVTKTGMVKKVDGSEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   DE++SV+      +I+L T  G  +RFP   +     + ++GVRGI
Sbjct: 640 VAKRTIAATKLQEEDELISVQVINDSQNIVLQTADGYFLRFPAGEVSEK-KKGAIGVRGI 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            L K D+V    +    +   + ++ Y +      RL SG  +
Sbjct: 699 RLHKNDEVEHAYL---FEEGTETKVVYKEKEVTLNRLKSGKRD 738



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C   +++   +L V++ G  K+    +F+++ R          +K+ E   L++V  +
Sbjct: 609 YLCDAQQMQIARLLFVTKTGMVKKVDGSEFQVAKR------TIAATKLQEEDELISVQVI 662

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ND+  I+L +  G  +R P  E+    +   GV      K++ V
Sbjct: 663 NDSQNIVLQTADGYFLRFPAGEVSEKKKGAIGVRGIRLHKNDEV 706


>gi|153814923|ref|ZP_01967591.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|317500435|ref|ZP_07958659.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089558|ref|ZP_08338457.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847954|gb|EDK24872.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|316898190|gb|EFV20237.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404926|gb|EGG84464.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 747

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/763 (34%), Positives = 418/763 (54%), Gaps = 32/763 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 4   ESQIIRTEYSDLMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYTE
Sbjct: 64  KCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL KD VDF PN+D + +EP+VL  R PN+LVNG  GIAVGMAT+IP
Sbjct: 124 ARLTKFTQEVCLADLDKDVVDFGPNFDETEKEPLVLPMRVPNLLVNGAEGIAVGMATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D   A I N  I    LM+ I+GPDFPTG +++ +  + N Y TG+G I +R
Sbjct: 184 PHNLGEVIDAVKAYIKNDSITTKQLMKYIKGPDFPTGGIVVNKDDLINIYETGQGKIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G    E+  G ++Q+V++EIPY +        L  +A LV  K+  DI D+ ++S ++G 
Sbjct: 244 GKVETEELKGGKKQLVISEIPYTMIGAGIGKFLNDVAGLVETKKTTDITDISNQSSKEGI 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V FR E+
Sbjct: 304 RIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGRPETLGLKKIIEHHVDFRFEL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ K LL K ++++ V  GL  A   +D ++ I+R S + + A+  L+    +    K
Sbjct: 364 ATRKYKTLLAKEQEKSEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLVNGVTDNIKFK 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I        +      +  +E Q  AILE+RL RL GL    +  E       I    
Sbjct: 424 SSI--------SKKMAVLLRFTERQAAAILEMRLYRLIGLEVQALIAEHEQTVKNIARYE 475

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I +EL S K+E    RRT I      + +E  I  +++V  +   GY 
Sbjct: 476 DILNNYDSMAQVIVEELESFKEEYAKARRTVIENAEEAVFEEKKIEEQEVVFLMDRFGYA 535

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + V ++VY   +      +            +        +  F++ G +++ KV  LP 
Sbjct: 536 RIVDVAVYERNKEAADSENKY----------IVHCMNTGKICIFTNSGKMHQVKVIDLPY 585

Query: 609 GSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+ +  +  E+I ++     D        ++F+T  G V++   S+F Q
Sbjct: 586 GKFRDKGVPIDNVSNYSSSDEQIVSVY----DSEQMRFAMLLFSTAQGMVKKVSGSEF-Q 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +   +A KL   D ++ V    +   ++L TK G  +RFP + +     + +VGVRGI
Sbjct: 641 VAKRTILATKLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPATEV-PIKKKAAVGVRGI 699

Query: 728 SLAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISG 767
            L K D++  + +          Y+E+   +  +   +R  +G
Sbjct: 700 RLQKKDELEKVYLFEEGTETKILYNEKEVSLNRLKTAKRDGAG 742



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 10/126 (7%)

Query: 778 DSSVEGNISEERCQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           D+    + S+E+   +   EQ     +L  + +G  K+ S  +F+++ R          +
Sbjct: 596 DNVSNYSSSDEQIVSVYDSEQMRFAMLLFSTAQGMVKKVSGSEFQVAKR------TILAT 649

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K+ E  +LV V  VN+N  ++L +  G  +R P  E+ I  +A  GV      K + +  
Sbjct: 650 KLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPATEVPIKKKAAVGVRGIRLQKKDELEK 709

Query: 894 VERIRE 899
           V    E
Sbjct: 710 VYLFEE 715


>gi|254391069|ref|ZP_05006277.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|197704764|gb|EDY50576.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 814

 Score =  531 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 277/744 (37%), Positives = 400/744 (53%), Gaps = 52/744 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +   + E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +MG+ 
Sbjct: 91  TPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEMGLR 150

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD-PP 125
            ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+  D PP
Sbjct: 151 PDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 210

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GIAVG
Sbjct: 211 AAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGIAVG 270

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY TGR
Sbjct: 271 MATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYETGR 330

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D +DR
Sbjct: 331 GTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDLTDR 390

Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  
Sbjct: 391 AHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 450

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  VV RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R    
Sbjct: 451 RFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER---- 506

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSEVQT+ IL+  L RLT   R ++ +E + L  EI
Sbjct: 507 ----------------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLMDEI 544

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                IL S + L  ++  EL SV  +  T RRT ++E   +        +  +   V +
Sbjct: 545 AALTRILESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPCRVLL 604

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G + R                 G      D V      +    +   +S G + +  
Sbjct: 605 SSTGLLARTVTGDPLP-------EPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVA 657

Query: 603 VWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           V  LP     A       G  L   LSL   E +  +    E         +   T  G 
Sbjct: 658 VIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQG-----LALGTLQGV 712

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R         N+       L   D I+   E  T E D++  T   Q +R+P + +R 
Sbjct: 713 VKRVVPD--YPANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRP 770

Query: 716 FAGRNSVGVRGISLAKGDQVISMA 739
             GR + G+ G+ LA G +V+S  
Sbjct: 771 -QGRAAGGMAGVKLADGARVLSFT 793



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 21/216 (9%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-------MA 739
                 +   +L +  G   R                  G   A+ D V+S         
Sbjct: 592 ALEVADDPCRVLLSSTGLLARTVTGDPLPEP--------GPKRARHDLVVSSVTATARGD 643

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I     A    R+  +      +   +        L    S+E + +      L    Q 
Sbjct: 644 IGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQG 703

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +   + +G  KR    D+     +   +    + + + I  +         + ++ ++  
Sbjct: 704 LALGTLQGVVKRV-VPDYPA---NKDELEVFSLKEGDRI--VGGAELRTGEEDLVFITSD 757

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             L+R P  ++R   RA  G+     A   RV+S  
Sbjct: 758 AQLLRYPAAQVRPQGRAAGGMAGVKLADGARVLSFT 793


>gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3]
 gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 782

 Score =  531 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 268/745 (35%), Positives = 408/745 (54%), Gaps = 35/745 (4%)

Query: 1   MTEHIISSDEEEEKGITSVS--ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++ I   + +++ G   VS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDTIDDPNMKQDGGGHQVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMRELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  LLD L +D VDFR NYDG+  EPVVL A++PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTIVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E+ D C+ +I  PD   D L+  + GPDFPTG +I+     I
Sbjct: 181 SSGIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +A
Sbjct: 241 AQAYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      ++    +    +V++  LYR + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESADDIRLILEPRTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R+EV++RR+++ L K   R  VL G  IA  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRQEVLLRRSRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+  W     + L    +++ Y   + G   LSEVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMREEWGIDHPRAL----NEADYVSPAPGEGELSEVQAEAILNMRLRSLRRLEEMELIRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMED 529
            ++L  E  E  D+L+  +     I  +L   K           RRTR  E   + ++  
Sbjct: 474 RDALMAERAEIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAEAGEVEEVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G+V        RA          +  +D D    +F   T   +
Sbjct: 534 EAMIEREPITVVCSQMGWV--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDKL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G  Y      LP G  +  G+ L  ++ L     I  I+             ++
Sbjct: 586 LVFASNGRFYTIGAANLPGG--RGMGEPLRLMVDLPNEAEIVDILI------HQPERKLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN      ++ +   R+GK  + +   +  L        + + + ++ G+ + FP
Sbjct: 638 VASTAGNGFVVPETEVVAQTRTGKQVLNVRDDERALICVPVAG-DHVAVVSQNGKFLVFP 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQ 734
           +  +        V ++  ++A+G Q
Sbjct: 697 LDEMPEMGRGKGVRLQKYNMARGKQ 721



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+ +L  S  G G      +     R+GK +      +   I   VA       D 
Sbjct: 629 IHQPERKLLVASTAGNGFVVPETEVVAQTRTGKQVLNVRDDERALICVPVA------GDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS  G  +  P++E+    R  KGV +  
Sbjct: 683 VAVVSQNGKFLVFPLDEMPEMGRG-KGVRLQK 713


>gi|116618458|ref|YP_818829.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097305|gb|ABJ62456.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 812

 Score =  531 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 256/833 (30%), Positives = 411/833 (49%), Gaps = 45/833 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P   L  LM  ++GPDFPTG ++ G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGIVQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I      +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF++FR+EVV++R+
Sbjct: 303 LSKEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ R             
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINR------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E + L  +I     I+  
Sbjct: 410 -------------FEFTQAQAEAIVTLQLYRLTNTDVTQLEEEFSQLNDKINCLNQIIHE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I++E+ ++     +PRR+ I   + +  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ESALKDVIREEIKAITKAYSSPRRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++A        +   + ++D V     ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSFKASD------NENGLAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+     L + ++ E +   +     E           +  G +++  L D +    
Sbjct: 571 KDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGA---FTIVSNDGFIKQTTLVDIVPKAY 627

Query: 671 SGKIAMKLDSRDEILSVETC-----TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             K +M +  + ++  V         +  ++LL +  G  +R+ I  +     R S GV+
Sbjct: 628 KKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHNGVGLRYAIKEVPEIGSRTS-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + +   +                      LI+        +   +  +   
Sbjct: 687 AMDLRDDDTIKAALFITDDKQSVAIVAENGAFKYMPVSLINHSKRGNKGVLIFTQKKTVA 746

Query: 786 SEERCQELKLKEQFILTVSEKGFGKR-TSSYDFRISNRSGKGIRATDVSKINE 837
            +     +       L++  K +  +     D+  S R G G    D  K  E
Sbjct: 747 YKVATATIFDSNVKALSILTKRYQIQELQLSDYHESQRIGNGQYVVDTDKNGE 799



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 19/222 (8%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SM 738
             T  +E+  +L ++ G   R  + + +     N        LA+ D V+        + 
Sbjct: 495 AVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENG-------LAEDDLVVFQGTLNTTNH 547

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +     +   R  +    +  +      ++++++   D  V   I+ +  ++      
Sbjct: 548 LFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGA--- 604

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
               VS  GF K+T+  D        K   A  + K       VA F       ++L+S 
Sbjct: 605 -FTIVSNDGFIKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSH 663

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            G  +R  + E+      T GV       D+ + +   I + 
Sbjct: 664 NGVGLRYAIKEVPEIGSRTSGVKAMDLRDDDTIKAALFITDD 705



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 16/247 (6%)

Query: 649 VFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +++G  +R  L  F    N +G     L   D ++   T    N + + T  G  + 
Sbjct: 505 VLVSRNGYYKRASLRSFKASDNENG-----LAEDDLVVFQGTLNTTNHLFMFTNKGNVIY 559

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +         G    + +S    D+V+  AI +                  ++  
Sbjct: 560 RPVHEL-PDTKWKDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGAFTIVSNDGFIKQTT 618

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQEL----KLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +     +    K+  +++          +     +K Q +L +S  G G R +  +    
Sbjct: 619 LVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHNGVGLRYAIKEVPEI 678

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                G++A D+   ++     A+F  +D   + +V++ G    +PV+ I  + R  KGV
Sbjct: 679 GSRTSGVKAMDL--RDDDTIKAALFITDDKQSVAIVAENGAFKYMPVSLINHSKRGNKGV 736

Query: 881 VIFSTAK 887
           +IF+  K
Sbjct: 737 LIFTQKK 743


>gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 832

 Score =  531 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 289/871 (33%), Positives = 455/871 (52%), Gaps = 95/871 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    + S  + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K 
Sbjct: 9   EHHSSVISSPLEEIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKG 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R   I+ QGN GS+D DP AA RY
Sbjct: 69  YRKSAKTVGLVIGNYHPHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TV + PN+D +  EP VL ARYPN+LVNG  GIA G ATNI
Sbjct: 129 TEARLGKISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V  I + D  L+ LME I+GPDFPTG ++ G  GI+ A+ TG+G I++
Sbjct: 189 PPHNLSEVIDAAVYRIQHADCSLEELMEYIQGPDFPTGGIVQGLDGIREAFETGKGRIIV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE+     +QIV+TEIPY+V K+ M++KI ++   K+I  I D+RDESDR G RV
Sbjct: 249 RGKAVIEQ-KKTVQQIVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++K+ A+ DVILN LY+ T LQ  ++ N+VA+   +P +  L  +L AF+  R EV+ 
Sbjct: 308 VVDMKKDANGDVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAQMLDAFIEHRREVIE 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y L K  DR H+L GL  AV+ LDE++ +IR S +   ++R +M            
Sbjct: 368 RRSRYDLKKKEDRCHILEGLIKAVSILDEIIALIRASKDKADSKRRIMD----------- 416

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q  AI+ +RL RL+      +R E  +L  EI+E  DI
Sbjct: 417 ---------------AFAFSDAQAEAIVTMRLYRLSSTDITQLREEYATLLNEIEELHDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTR--IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  ++ +EL  VK    TPR TR       + ++    I  E ++ T+S  GY 
Sbjct: 462 LENPRMLKKVMIRELHEVKKAFKTPRLTRIEHEIEEIVIDKVAMINSEQVMFTISRDGYF 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV +  Y A +    G     +++ D +     V+T   VLFF++ G      V+ +  
Sbjct: 522 KRVSMRSYNAGKEDMTG-----LKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYEVEE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              +  G  + + + ++  E+IT         S   N Y++  TK+G V++  + ++ + 
Sbjct: 577 SRWKEIGSHINSTIRISGEEKITDAFVLR---SFATNAYMISVTKNGLVKKTAVREYEVS 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N      MKL   DE+++       ++IL+ +K G   R+P+S I   + R S GV+ +
Sbjct: 634 RNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVSRYPVSLIPETSPR-SKGVKAM 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+++S A + HADA                                         
Sbjct: 693 NLV-MDELVS-ACIHHADASQ--------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++  +++   KR    D  ++ R  +G         ++   +  +   
Sbjct: 712 ------------LVVFTDQCQVKRIKLSDIDVTGRPARGAMICK-KVKSKPYQIAHIALH 758

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             ND++++++++    ++   +I + S+   
Sbjct: 759 ELNDELVIINEETQ--KILAKDISLMSKDAT 787



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 23/215 (10%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
           V     E  +   ++ G   R            N+       L +GD ++    V   D 
Sbjct: 503 VAMINSEQVMFTISRDGYFKRVS------MRSYNAGKEDMTGLKEGDHLVGYGEVNTLDH 556

Query: 746 -------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                    Y     Y    S  + + S     I     +   +  +             
Sbjct: 557 VLFFTTQGTYGYTPVYEVEESRWKEIGSHINSTIRISGEEKITDAFV-----LRSFATNA 611

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           ++++V++ G  K+T+  ++ +S R+ K +    + + +E   ++      D D+I++ S 
Sbjct: 612 YMISVTKNGLVKKTAVREYEVS-RNNKTMSNMKLLEGDE---VITTMAAYDYDEILIASK 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            G + R PV+ I   S  +KGV   +   DE V +
Sbjct: 668 NGYVSRYPVSLIPETSPRSKGVKAMNLVMDELVSA 702



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 97/265 (36%), Gaps = 14/265 (5%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK-LDSRDEILSVETCTQENDILLTTKLG 703
              +   ++ G  +R  +    +   +GK  M  L   D ++        + +L  T  G
Sbjct: 509 EQVMFTISRDGYFKRVSM----RSYNAGKEDMTGLKEGDHLVGYGEVNTLDHVLFFTTQG 564

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                P+  +   +    +G      I ++ G++ I+ A VL + A     I   K+   
Sbjct: 565 TYGYTPVYEVEE-SRWKEIGSHINSTIRIS-GEEKITDAFVLRSFATNAYMISVTKNGLV 622

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           ++  +        +    +       E            IL  S+ G+  R        +
Sbjct: 623 KKTAVREYEVSRNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVSRYPVSLIPET 682

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +   KG++A ++     + A +      D  Q+++ +D+  + R+ +++I +  R  +G 
Sbjct: 683 SPRSKGVKAMNLVMDELVSACIHHA---DASQLVVFTDQCQVKRIKLSDIDVTGRPARGA 739

Query: 881 VIFSTAKDERVVSVERIRESEIVDE 905
           +I    K  +   +  I   E+ DE
Sbjct: 740 MICKKVKS-KPYQIAHIALHELNDE 763


>gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
          Length = 823

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 280/824 (33%), Positives = 411/824 (49%), Gaps = 69/824 (8%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D  E+++ IT + ++DEM+ S+L YA++VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M QMG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE R+  AA  L+  L +DTVDF PNYD  F +P VL A +P +LVNG 
Sbjct: 121 LD-DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL E + G + ++DNP   +  LM  I GPD P G VI+G  GIK 
Sbjct: 180 SGIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R    IE+ +  +  I+VT++PY V    ++EKI E     R+  I+ +
Sbjct: 240 AYETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           ++ +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L
Sbjct: 300 QNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEML 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + F+  R +V  RR+++ L K  DR H++ GL IA+ ++D+V+ IIR S + E AR  LM
Sbjct: 360 QVFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LSE Q   ILELRL RLT   R ++  E +
Sbjct: 420 T--------------------------AFDLSEAQANYILELRLRRLTKFSRIELEAERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---------- 528
            L  +I    +IL     L  ++K+EL  V D L TPRRT ++                 
Sbjct: 454 ELLAKIASLREILEDPELLRALVKKELREVSDRLGTPRRTLLLASTGTPVGAAAADDAAL 513

Query: 529 ------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
                        +  I  +  VV +S  G + RV          GG           D 
Sbjct: 514 AALPSVSRSGKGLDLQIPDDPCVVVLSSTGALARV---------EGGDPLEPGPRAASDG 564

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
                  +  + V   +  G  ++  V  LP       G +L   +  +    + T +P 
Sbjct: 565 WRVQLPSTARSQVAVVTEDGIAHRIDVVDLPALPRFETGLSLAGAMPASL--LLHTDVPA 622

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                      V   T  G V+R +      + R     + L+  D ++  + C+ E D+
Sbjct: 623 VGLLDPEGTDVVAMGTTRGTVKRLRPD---VLQRDEWEVIALEDGDRLVGFDRCSDEADL 679

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +  +   Q +R P + +R   GR + G+ G+ L  G + +   +V   +A  D  +  + 
Sbjct: 680 VFISSDAQLLRTPAAKVRP-QGRTAGGMAGMKLNAGAEALGFWVV---EAPIDAVVVTVA 735

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                       T ++T  +   +        RCQ     E  +
Sbjct: 736 AALGALPGTGQTTVKVTPFECYPTKGRGGQGVRCQRFLRGEDRL 779



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 60/211 (28%), Gaps = 18/211 (8%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              +  +++ +  G   R           R +     + L    +   +A+V      + 
Sbjct: 530 IPDDPCVVVLSSTGALARVEGGDPLEPGPRAASDGWRVQLPSTAR-SQVAVVTEDGIAHR 588

Query: 750 ERICYMKHMSAQRRLIS--GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             +  +  +      +S  G       L  D    G +  E    + +        + +G
Sbjct: 589 IDVVDLPALPRFETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMG-------TTRG 641

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR      +            +V  + +   LV     +D   ++ +S    L+R P 
Sbjct: 642 TVKRLRPDVLQRDE--------WEVIALEDGDRLVGFDRCSDEADLVFISSDAQLLRTPA 693

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++R   R   G+           +    + 
Sbjct: 694 AKVRPQGRTAGGMAGMKLNAGAEALGFWVVE 724


>gi|300854106|ref|YP_003779090.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300434221|gb|ADK13988.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 954

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 305/953 (32%), Positives = 480/953 (50%), Gaps = 93/953 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ +     ++  I  + I + M ++YL YA+ V   RA+PD+RDGLKPVHRRI++G 
Sbjct: 1   MVKNTVIP---KDNNIIKIPIEEAMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRIIYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ +I+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPIIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ K  V+   NY GS +EP VL ARYPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIEKGVVNMVDNYSGSEKEPEVLPARYPNLLVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+D  VA IDN DI ++ LM  I+GPD PTG +I+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLREVIDATVAYIDNRDITVEELMNYIKGPDLPTGGIIIGKKSMISA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE PY+ +KA +L+ I+E+  +KR    +  I
Sbjct: 238 YETGEGKVTLRAKTSIEKLDSGRLGIVITEFPYRRSKAKLLQVISEMTADKRYARALEPI 297

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE K+      A  IL  L + T LQ   S NMVAL   KP    
Sbjct: 298 SDIRDESDRSGIRAVIEFKKSTDMKLAQKILKYLLKKTDLQCNISFNMVALGDGKPITMG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V +++E++ +RTK  L +A+ R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKLILKYYVEYQKEIITKRTKRELEEAKKRFHIVEGFIKALGIMDEIIKTIRSSKSKKDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              LM++                             +  Q  AILEL L RLTGL  D  
Sbjct: 418 ASNLMEQ--------------------------FDFTYPQAEAILELMLYRLTGLEIDSF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
             E   L   IK+   IL S   +L +IK+EL+ V ++    RRT IVE       + ++
Sbjct: 452 EKEHEKLLKVIKKLTKILESEKEILKVIKKELIEVGEKYGDDRRTAIVEEDEKAKIDVDE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+V+T+S  GY+KR  L  Y    R       +  R+ DF       ST  +++F
Sbjct: 512 IIIDEDIVITMSKEGYIKRTSLKSY---NRSSGKVEDIEYREGDFNEYFINSSTKDTLMF 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER--ITTIMPFPEDESSWNNLYVV 649
           F+  G +Y+ +   +P    + +G+ L N++     E+  IT +    +     +    V
Sbjct: 569 FTDSGDMYRIRGMDIPEFKWKEKGEKLDNLIKGIDLEKNHITAVYSIKDFNLQKD---FV 625

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCV 706
           F T  G ++R  +  F+  N +  +A+KL + ++++ VE   +      I + TK G   
Sbjct: 626 FFTSIGGIKRTGIESFVT-NYTKLMALKLKNGEKLIGVELVDRSANVEFIKVETKSGLEF 684

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                 I +   RN V    ++L   D  + M      + +Y E    +      + L S
Sbjct: 685 TVRSPEINL-EDRNIVTTPLVTLQGEDFAVKMDF--STEPEYKEFYININKSGIIKVLNS 741

Query: 767 GDTEEITSLKNDS-----SVEGNISEERCQELKLKEQ----------------------- 798
           G + +     + S     +++G +       L+  +                        
Sbjct: 742 GKSSKSVFTNSSSYILIFTLDGEVLSIPAFMLQNVDNSGIDIKVLMKNIDVGNILKIISV 801

Query: 799 ------FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVNDND 851
                 ++   ++ G  K+T+  +F+          +T     ++  +LV V +   +  
Sbjct: 802 EDFDCGYVYFFTQYGMVKKTALMEFKQ-----IAGCSTAYKFKDKKDSLVNVEYSDKEEI 856

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +I L++++G  I+   N +    +   GV   S  +D++V     I  ++  D
Sbjct: 857 EIFLITERGMGIKFKANTVNTMGKLAAGVTAISLKEDDKVAYCFLIDGNDSKD 909


>gi|269956722|ref|YP_003326511.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305403|gb|ACZ30953.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 855

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 274/855 (32%), Positives = 411/855 (48%), Gaps = 82/855 (9%)

Query: 1   MT-EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M  +      E  ++ I  + +  EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ 
Sbjct: 1   MARKTTAPPVEPFDEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYM 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  MG+  ++ YVK +R+ GEVMGK HPHG+ AIYDAL R+AQD+SLRL L++G GNFGS
Sbjct: 61  MADMGLRPDRPYVKSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL   +  +   L +D VDF PNYD    +P VL +  PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVV     ++ NP   L+ +M  + GPD PTG  I+G  GI++
Sbjct: 180 SGIAVGMATNMAPHNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIVGLDGIRD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRG+   R  + IE  +  R  I +TE+PY V    ++EKIA+ V+ K+I  +A++
Sbjct: 240 AYRSGRGTFRTRATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANV 299

Query: 300 RDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D +DR    R+V+E+K G   + +L QLYR T L+  F +N VAL G +P    L+ +L
Sbjct: 300 QDLTDRTHGMRLVVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALVGGQPRTLGLLELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R EVV RRT Y L K ++R H++ GL +A+ ++DEV+++IR S +   AR  LM
Sbjct: 360 RVWVEHRIEVVRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LSE Q   IL+L+L RLT   R ++  E +
Sbjct: 420 D--------------------------VFDLSEPQATYILDLQLRRLTKFSRIELEKEQS 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------ 526
            L  EI    +IL S + L  ++  E+  V     TPRRT +++                
Sbjct: 454 ELEKEIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTVLLDSAGGATTSAAAAPGGA 513

Query: 527 -----MEDEDCIVREDMVVTVSHLGYVK----------------RVPLSVYRAQRRGGKG 565
                 E    I      V +S  G +                 ++ L        G  G
Sbjct: 514 RGRKPAEISLEIADAPTHVLLSATGLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPG 573

Query: 566 RSGVVMR-----DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------AR 614
            SG V R       D +    + ++ + +   ++ G + +     LP   P       + 
Sbjct: 574 ASGAVSRHGRRHAHDALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSG 633

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +  ++ L  GE    ++   +D        +   T  G V+R   SD +  N+    
Sbjct: 634 GIPVSELVELAPGEEALAVVSLADDA-----PTLALGTAGGVVKRVAASD-VPSNKDEWT 687

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            + L   D ++       +++++  +     + +  SA+R         + GISLA G  
Sbjct: 688 VIGLKDGDSVVGAAPAGDDDEVVFISSDSSLLHYAASAVRPQGRAGGG-IAGISLAAGQT 746

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+   +     A   E        SA +    G      +       +G  +        
Sbjct: 747 VVFFGVARA--AVRPELTVVTVGGSAGQLPGVGGGSVKVTPYELYPGKGRATGGVRSHRF 804

Query: 795 LKEQFILTVSEKGFG 809
           LK +  L ++  G G
Sbjct: 805 LKGEDRLVLAWVGEG 819


>gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
 gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
          Length = 827

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 263/762 (34%), Positives = 433/762 (56%), Gaps = 40/762 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++E +  +   S+ D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  +N
Sbjct: 3   EKEVKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +   LI+ QGN GS+D DP AA 
Sbjct: 63  KPYHKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + + FLL D+ KDTV++ PN+     EP VL AR+PN+LVNG  GIA G AT
Sbjct: 123 RYTEARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+   +  I +PD  L+ LM+ ++GPDFPTG +++G  GIK A+ TGRG +
Sbjct: 183 NIPPHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVMGLDGIKQAFQTGRGRV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR    +      + QI++ EIPY+V K+ +++KI E+   K+I  I D+RDESDR G 
Sbjct: 243 LIRSKVEVVPLRTIK-QIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V++LK+ ++ + ILN LY+ T LQ  ++ N++A+    P + +L  +L AF++ RE+V
Sbjct: 302 RIVVDLKKDSNDEQILNYLYKNTDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHREDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR+K+ L   ++RAH+L GL  AV+ +DE++ IIR S +   A++ L++R        
Sbjct: 362 VIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                +E Q  AI+ +RL RLT     +++ E   L  +I E  
Sbjct: 414 ------------------FDFTEKQAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLG 546
            I+  +S L  ++ +EL  V  E +TPR ++IV  + +  ++++  I +E+ ++TV+  G
Sbjct: 456 KIIRDKSELHKVMVEELEKVNAEFNTPRLSKIVHEVKEIVIDEKAMISKEECMITVTRDG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KRV +  + A        S    +D D +       T  +++FF++ G      V+++
Sbjct: 516 YIKRVSMRSFNASS-----DSMTQRKDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQI 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +  G  + N + ++  E+I         ++    ++VV A++HG ++R +L +F 
Sbjct: 571 EEAKWKDLGGHISNYIKMDSSEKIIAAYVL---DAFKTGVHVVSASRHGMIKRTELKEFE 627

Query: 667 QINRSGKI-AMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               +  +  MK+   DE++SV      ++ ++L ++ G  + +P+          S GV
Sbjct: 628 VSRSNKTMTCMKIGGMDEMISVSLSYKPDDQVILVSEQGYGLMYPV-EQIPLVSNKSKGV 686

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           + ++LAK D V S+ I  + D         +     ++  I+
Sbjct: 687 KAMNLAKDDCVASICIRKNRDEQVLISTTTLSLKRMKQLEIA 728



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 12/210 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--SMAIVLHAD 745
              ++E  ++  T+ G   R  + +    +   +           D ++    +  L   
Sbjct: 500 AMISKEECMITVTRDGYIKRVSMRSFNASSDSMTQR------KDTDSLVCYGASHTLQTL 553

Query: 746 ADYDERICYMK-HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             +  R  Y    +         D     S          I      +       +++ S
Sbjct: 554 IFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEKIIAAYVLDAFKTGVHVVSAS 613

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  KRT   +F +S RS K +    +  ++E   +        +DQ+ILVS++G  + 
Sbjct: 614 RHGMIKRTELKEFEVS-RSNKTMTCMKIGGMDE--MISVSLSYKPDDQVILVSEQGYGLM 670

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            PV +I + S  +KGV   + AKD+ V S+
Sbjct: 671 YPVEQIPLVSNKSKGVKAMNLAKDDCVASI 700



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 96/257 (37%), Gaps = 9/257 (3%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   E         ++  T+ G ++R  +  F   + S     +    D ++        
Sbjct: 494 IVIDEKAMISKEECMITVTRDGYIKRVSMRSFNASSDS---MTQRKDTDSLVCYGASHTL 550

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG--ISLAKGDQVISMAIVLHADADYDER 751
             ++  T  G     P+  I     ++  G     I +   +++I+ A VL A       
Sbjct: 551 QTLIFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEKIIA-AYVLDAFKTGVHV 609

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-ILTVSEKGFGK 810
           +   +H   +R  +       ++        G + E     L  K    ++ VSE+G+G 
Sbjct: 610 VSASRHGMIKRTELKEFEVSRSNKTMTCMKIGGMDEMISVSLSYKPDDQVILVSEQGYGL 669

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
                   + +   KG++A +++K + + ++      N ++Q+++ +   +L R+   EI
Sbjct: 670 MYPVEQIPLVSNKSKGVKAMNLAKDDCVASICIRK--NRDEQVLISTTTLSLKRMKQLEI 727

Query: 871 RIASRATKGVVIFSTAK 887
              +R  KG  I    K
Sbjct: 728 APLNRPAKGNRICKLVK 744


>gi|145633278|ref|ZP_01789009.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986124|gb|EDJ92714.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 620

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 260/647 (40%), Positives = 388/647 (59%), Gaps = 36/647 (5%)

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++E+PYQVNKA ++EKIAEL+REK+I  I+++ D S+++G R+ I++KR A  +V+LN L
Sbjct: 1   MSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEVVLNHL 60

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y  T +Q  F +NMVAL+  +P  F L  I++AFV  R EVV RR+ + L KAR+R H+L
Sbjct: 61  YSLTQMQVTFGINMVALDHGQPRLFNLKEIIEAFVLHRREVVTRRSIFELRKARERTHIL 120

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW----NASDIKDLIDLIDDSSYTIGS 443
            GLA+A +N+DE++ IIR S N E A   +  RSW    +  ++ D+    DD    +G 
Sbjct: 121 EGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENLGI 180

Query: 444 DGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  RL+ +I+
Sbjct: 181 QGEQYYLSPAQVNAILELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEVIR 240

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 241 EELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRG 300

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++NIL
Sbjct: 301 GKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRPIVNIL 360

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L + ERIT I+P    E    + +V+ AT  G V++  L++F +   +G IA+ L   D
Sbjct: 361 PLQENERITAILPVSAYEE---DKFVIMATADGIVKKIALTEFSRPRSNGIIALNLRDED 417

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++ V+     N+I+L +  G+ VRF  +A+R    R + GVRGI LA           L
Sbjct: 418 ELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMG-RLATGVRGIKLA-----------L 465

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
             D   DE                 + EEI+    +++++ NI +     +   E  ILT
Sbjct: 466 TNDISDDESAV--------------EIEEISDDNAETALDLNIDKVVSLVVPKSEGAILT 511

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V + DQI+L++D GTL
Sbjct: 512 ATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLITDAGTL 569

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +R  V+E+ I  R T+GV +  TA DE VVS+ER+ +++  D  E +
Sbjct: 570 VRTRVSEVGIVGRNTQGVRLIRTADDEHVVSLERVCDADEEDSLEES 616


>gi|227529214|ref|ZP_03959263.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350860|gb|EEJ41151.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 823

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 278/788 (35%), Positives = 437/788 (55%), Gaps = 49/788 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DGKIEKMTLEQLMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  V +++NPD  L+ LME I GPDFPTG +I G  GI+ AY TGRG IV+R 
Sbjct: 183 HNLGEVLDALVYLLNNPDASLEKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ I
Sbjct: 243 RTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA+A  ILN L + T LQ  ++ NMVA++  +P R  L  IL ++++F+++++ RR
Sbjct: 303 ELKRGANAQGILNYLLKNTDLQINYNFNMVAIDEQRPMRVGLKRILISYLSFQKQIIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LN A+ R H++ GL  A++ LD+V++ IR S N + A+  L+ +            
Sbjct: 363 TQFNLNNAQHRLHIVEGLIKALSILDQVIKTIRGSKNRKDAKENLINQ------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S  Q  AI+ L+L RLT     ++++E   L  +I+E   IL+
Sbjct: 411 --------------YAFSAEQAEAIVTLQLYRLTNTDVTELKDEQKKLNQQIEEFQLILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  ++++E+L++K E   PRRT+I      L ++ +  + +ED+++ VSH GY+KR
Sbjct: 457 NDQELANVLRREMLAIKKEFGNPRRTKIESHVEKLRVDTKVTVAKEDVILLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A      G     +R++D+   +   +T   +  F++LG V    V  +    
Sbjct: 517 SSVRSFKASPIDENG-----LREDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ--- 667
            +  G+ +   + L + E I   M F   +       ++  T  G ++++  +D+     
Sbjct: 572 WKDTGEHISQTIGLAENEHIIKAMVF---DKLDQPGTIIMGTSDGQIKQSAFTDYKPGSR 628

Query: 668 -INRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
             +R+            ++SV   E   +   +L+ +  G  VRF ++ + V   R + G
Sbjct: 629 YKSRTTTGIKLKSDEARLVSVDYYEPTNENRSLLVISHEGYAVRFDVADVPVTGLR-TGG 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR I+L   D      +V        + +  +    A + + S + E     +    V  
Sbjct: 688 VRAINLKDDDYATDYTLVSEG-----QNLAMITQRGAFKEMASSEIETGARARRGELVIH 742

Query: 784 NISEERCQ 791
            I     +
Sbjct: 743 RIKNHPHK 750



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 89/245 (36%), Gaps = 19/245 (7%)

Query: 663 SDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R+       KL    ++    T  +E+ ILL +  G   R  + +        
Sbjct: 474 KEFGNPRRTKIESHVEKLRVDTKV----TVAKEDVILLVSHAGYIKRSSVRSF------K 523

Query: 721 SVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +  +    L + D  I +     + H     +      + +         DT E  S   
Sbjct: 524 ASPIDENGLREDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDARWKDTGEHISQTI 583

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +   +I +    +   +   I+  +  G  K+++  D++  +R  K    T +   ++
Sbjct: 584 GLAENEHIIKAMVFDKLDQPGTIIMGTSDGQIKQSAFTDYKPGSRY-KSRTTTGIKLKSD 642

Query: 838 IGALVAV---FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              LV+V    P N+N  ++++S +G  +R  V ++ +    T GV   +   D+     
Sbjct: 643 EARLVSVDYYEPTNENRSLLVISHEGYAVRFDVADVPVTGLRTGGVRAINLKDDDYATDY 702

Query: 895 ERIRE 899
             + E
Sbjct: 703 TLVSE 707



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 85/244 (34%), Gaps = 15/244 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  +  G ++R+ +        S      L   D  + ++       + + T LG  + 
Sbjct: 505 ILLVSHAGYIKRSSV---RSFKASPIDENGLREDDYPILIQQTNTLAHLFMFTNLGNVIY 561

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  I   A     G    + I LA+ + +I   +    D      +        Q   
Sbjct: 562 RPVHEI-TDARWKDTGEHISQTIGLAENEHIIKAMVFDKLDQPGTIIMGTSDGQIKQSAF 620

Query: 765 ISGDTEEITSLKNDSSVEGNISEER-----CQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                      +  + ++    E R       E   + + +L +S +G+  R    D  +
Sbjct: 621 TDYKPGSRYKSRTTTGIKLKSDEARLVSVDYYEPTNENRSLLVISHEGYAVRFDVADVPV 680

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +     G+RA ++   +          V++   + +++ +G    +  +EI   +RA +G
Sbjct: 681 TGLRTGGVRAINLKDDD---YATDYTLVSEGQNLAMITQRGAFKEMASSEIETGARARRG 737

Query: 880 VVIF 883
            ++ 
Sbjct: 738 ELVI 741


>gi|219683436|ref|YP_002469819.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621086|gb|ACL29243.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
          Length = 982

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 286/919 (31%), Positives = 437/919 (47%), Gaps = 122/919 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +   + Y+
Sbjct: 17  EEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYM 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 77  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMATN+ T
Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG +  R 
Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRS 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +DR    R+V
Sbjct: 256 ATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R           
Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I E   IL
Sbjct: 425 ---------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERIL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
            S + L G++  E+        TPRRT +++   D                         
Sbjct: 470 GSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHA 529

Query: 527 ------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
                               +   I  E  V+ +S  G + R+ +          +G   
Sbjct: 530 ENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDALTIW--AKRGAHT 587

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILS 623
                +D +  L    T       +S G +    V  LP            G     +L+
Sbjct: 588 EKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLT 647

Query: 624 LN------QGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
                    GER+   +   +    D+++     V   T++G V+R        ++    
Sbjct: 648 STESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMDSWSI 707

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I   L   DE+L       ++  +  +     + +    +R   GR + G+ GI LA G 
Sbjct: 708 ID--LKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRTAAGMAGIHLADGC 764

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S A+V HAD ++ +     +H  A   L       + ++  D               
Sbjct: 765 TVLSCAVVAHADVEWHDA----EHDDAGNLLSPASGAVVLTVAGDVDA------------ 808

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAVFPVNDND 851
                  L  +E G  K T    +    R+  G+R+    K       A V  +P     
Sbjct: 809 -------LPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKGQNTLIRACVGSYP----- 856

Query: 852 QIILVSDKGTLIRVPVNEI 870
            ++  +  G  + +P   I
Sbjct: 857 -LLAATSGGHPVELPAPAI 874



 Score = 46.1 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 76/261 (29%), Gaps = 37/261 (14%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +   V+  +  G + R  +       + G    K +  D I+S+       D  L T  
Sbjct: 555 EDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALVTSA 614

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ V                                 +V   + +    +     + A  
Sbjct: 615 GRMVLAH------------------------------VVELPNLEVTGHLSLTGGIEATE 644

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
            L S ++ +    +   +           +   +   +   +  G  KR +       + 
Sbjct: 645 LLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMD- 703

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
                   D+   +E   L+     +D+D+ + VS   +L+      +R   R   G+  
Sbjct: 704 ---SWSIIDLKDGDE---LLVAADAHDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAG 757

Query: 883 FSTAKDERVVSVERIRESEIV 903
              A    V+S   +  +++ 
Sbjct: 758 IHLADGCTVLSCAVVAHADVE 778


>gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 823

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 281/824 (34%), Positives = 411/824 (49%), Gaps = 69/824 (8%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D  E+++ IT + ++DEM+ S+L YA++VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MAKKDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M QMG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS
Sbjct: 61  MDQMGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE R+  AA  L+  L +DTVDF PNYD  F +P VL A +P +LVNG 
Sbjct: 121 LD-DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL E + G + ++DNP   +  LM  I GPD P G VI+G  GIK 
Sbjct: 180 SGIAVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R    IE+ +  +  I+VT++PY V    ++EKI E     R+  I+ +
Sbjct: 240 AYETGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           ++ +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L
Sbjct: 300 QNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEML 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + F+  R +V  RR+++ L K  DR H++ GL IA+ ++D+V+ IIR S + E AR  LM
Sbjct: 360 QVFLDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LSE Q   ILELRL RLT   R ++  E +
Sbjct: 420 T--------------------------AFDLSEAQANYILELRLRRLTKFSRIELEAERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---------- 528
            L  +I    +IL     L  ++K+EL  V D L TPRRT ++                 
Sbjct: 454 ELLAKIASLREILEDPELLRALVKKELREVSDRLGTPRRTLLLASTGTPVGAAAADDAAL 513

Query: 529 ------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
                        E  I  +  VV +S  G + RV          GG           D 
Sbjct: 514 AALPSVSRSGKGLELQIPDDPCVVVLSSSGALARV---------EGGDPLEPGPRAASDG 564

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
                  +  + V   +  G  ++  V  LP       G +L   +  +    + T +P 
Sbjct: 565 WRVQLPSTARSQVAVVTEDGIAHRIDVVDLPALPRFETGLSLAGAMPASL--LLHTDVPA 622

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                      V   T  G V+R +      + R     + L+  D ++  + C+ E D+
Sbjct: 623 VGLLDPEGTDVVAMGTARGTVKRLRPD---VLQRDEWEVITLEDGDRLVGFDRCSDEADL 679

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +  +   Q +R P + +R   GR + G+ G+ L  G + +   +V   +A  D  +  + 
Sbjct: 680 VFISSDAQLLRTPAAKVRP-QGRTAGGMAGMKLNPGVEALGFWVV---EAPIDAVVVTVA 735

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                       T ++T  +   +        RCQ     E  +
Sbjct: 736 AALGALPGTGQTTVKVTPFECYPTKGRGGQGVRCQRFLRGEDRL 779



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 60/211 (28%), Gaps = 18/211 (8%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              +  +++ +  G   R           R +     + L    +   +A+V      + 
Sbjct: 530 IPDDPCVVVLSSSGALARVEGGDPLEPGPRAASDGWRVQLPSTAR-SQVAVVTEDGIAHR 588

Query: 750 ERICYMKHMSAQRRLIS--GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             +  +  +      +S  G       L  D    G +  E    + +        + +G
Sbjct: 589 IDVVDLPALPRFETGLSLAGAMPASLLLHTDVPAVGLLDPEGTDVVAMG-------TARG 641

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KR      +            +V  + +   LV     +D   ++ +S    L+R P 
Sbjct: 642 TVKRLRPDVLQRDE--------WEVITLEDGDRLVGFDRCSDEADLVFISSDAQLLRTPA 693

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++R   R   G+           +    + 
Sbjct: 694 AKVRPQGRTAGGMAGMKLNPGVEALGFWVVE 724


>gi|167756989|ref|ZP_02429116.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
 gi|167703164|gb|EDS17743.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
          Length = 880

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 281/848 (33%), Positives = 439/848 (51%), Gaps = 94/848 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I  +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y 
Sbjct: 11  DKKII-MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYR 69

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ R++QDW +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 70  KSAKTVGNVIGNYHPHGDTSVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP 
Sbjct: 130 ARLSAIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  I  P+  L+ LME I+GPDFPTGA++ G+ GI NA+ +GRG +++R 
Sbjct: 190 HNLEEVIDATIHRIKYPNCSLEKLMEFIKGPDFPTGAIVEGKQGILNAFKSGRGKVIVRS 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S + +      +IV+TEIPY+VNKA ++ KI E+   + I  I ++RDESDR G R+VI
Sbjct: 250 TSEMIEEKT-MNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVI 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+  +    LN LY+ T LQ  ++ NMVA+   +P    +I IL  ++A + +VV R 
Sbjct: 309 DLKKDINVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRS 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKA +R H++ GL  A++ LDEVV+ IR S +   A+  L+++            
Sbjct: 369 SIHDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEK------------ 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT      + NE   L   I    +IL+
Sbjct: 417 --------------YGFSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILN 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  +L  +K +   PR ++I + + +  ++++  I+ ED+ V+++  GY+KR
Sbjct: 463 SDEVLRKVIIDQLKGIKKKYPMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +     +A      G+     ++ D++  ++  +T   +L F+  G      V ++    
Sbjct: 523 ISNRSIKASEGIPFGK-----KENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFK 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  GK +  ++ LN GE+I   +   +       LYV+ ATK+G ++R  L DF     
Sbjct: 578 WKDAGKHVSYLVKLNAGEKIIGTILVKDFNL---PLYVMLATKNGQIKRTNLKDFEVTRY 634

Query: 671 SG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S     M L + D ++ V+       I+LTTK G    +    + +     + G+R ++L
Sbjct: 635 SKPLKCMGLKNDDRVVDVKLTDNNQGIILTTKAGYGALYSEQEVSIVGI-KAAGIRAVNL 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+++S+ I                                                 
Sbjct: 694 -KNDELVSLNIFNP---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                L    ++ +SE+G  KR    D    NR+ KG      +  ++I  +     V D
Sbjct: 707 -----LVSSSLIVISEEGGVKRIKIGDITPCNRATKGTLLYK-NPKSKIIYVKDSVIV-D 759

Query: 850 NDQIILVS 857
           N Q+I V+
Sbjct: 760 NSQLITVT 767



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 17/252 (6%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T+ G ++R        I  S  I       D ++S+      + +LL T  G  +  
Sbjct: 512 VSITRDGYIKRIS---NRSIKASEGIPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFI 568

Query: 709 PISAIRVFAGRNSVGVRG--ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           P+  I  F  +++       + L  G+++I   +V             +   + Q +  +
Sbjct: 569 PVHKIEEFKWKDAGKHVSYLVKLNAGEKIIGTILVKDF---NLPLYVMLATKNGQIKRTN 625

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSG 824
               E+T         G  +++R  ++KL    Q I+  ++ G+G   S  +  I     
Sbjct: 626 LKDFEVTRYSKPLKCMGLKNDDRVVDVKLTDNNQGIILTTKAGYGALYSEQEVSIVGIKA 685

Query: 825 KGIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            GIRA ++    +   LV++   N   +  +I++S++G + R+ + +I   +RATKG  +
Sbjct: 686 AGIRAVNL----KNDELVSLNIFNPLVSSSLIVISEEGGVKRIKIGDITPCNRATKG-TL 740

Query: 883 FSTAKDERVVSV 894
                  +++ V
Sbjct: 741 LYKNPKSKIIYV 752


>gi|166030881|ref|ZP_02233710.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
 gi|166029148|gb|EDR47905.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
          Length = 746

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 411/763 (53%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 2   QDSQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQ++   + L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMALVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL K+ VDF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKNIVDFMPNFDETEKEPEVLPVRVPNLLINGADGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D   A + + DI    LM+ I+GPDFPTG +++ +  +   Y +G G I +
Sbjct: 182 PPHNLAEVIDAVEAYMKHEDISTKQLMKCIKGPDFPTGGIVVNKDDLLEIYESGAGKIKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G ++++V+TEIPY +        L  +  LV  K+  DI D+ + S ++G
Sbjct: 242 RGKVEVEEMKGGKKRLVITEIPYTMIGAGIGKFLNDVCALVETKKTNDIVDISNMSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIELKKGADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKKIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K RDR  +  GL  A   +D ++ I+R S +   AR  L Q        
Sbjct: 362 LATRKYKTLLAKERDRKEIQEGLIKACDVIDLIIEILRGSQSVADARACLTQGITENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I               +  +E Q  AILE+RL +L GL  + +  E       I   
Sbjct: 422 KSGISR--------KMAAMLRFTERQANAILEMRLYKLIGLEIEALMKEHEETLKNIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L   K E    RRT +  G   + +E  +  +++V  +   GY
Sbjct: 474 EDILNNYDSMAEVIIEDLEHFKKEYARKRRTVVENGQEAVYEEKKVEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +      +            +        +  F++ G +++ KV  LP
Sbjct: 534 AKTVDVATYERNKEAADAENKW----------IVNCINTGKLCVFTNTGKMHQIKVLDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G+ + N+ + +  + +   M    DE       ++FATK G +++ K ++F Q
Sbjct: 584 YGKFRDKGQPIDNVSNYDSTQEMVVYMC---DELQLRYAKLLFATKQGMIKKVKGNEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   DE++SV+  T +  ++L TK G  +RF    +     + +VGVRGI
Sbjct: 640 VAKRTIAATKLQEDDELISVQVITDDQHVVLQTKDGYFLRFSAQEVAEK-KKAAVGVRGI 698

Query: 728 SLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISG 767
            L K D++  + +          Y +R   +  +   +R  +G
Sbjct: 699 KLRKNDELEQIYLFYEGTEHKISYGDRELTLNRLKVAKRDGTG 741



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C EL+L+   +L  +++G  K+    +F+++ R          +K+ E   L++V  + D
Sbjct: 611 CDELQLRYAKLLFATKQGMIKKVKGNEFQVAKR------TIAATKLQEDDELISVQVITD 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +  ++L +  G  +R    E+    +A  GV      K++ +
Sbjct: 665 DQHVVLQTKDGYFLRFSAQEVAEKKKAAVGVRGIKLRKNDEL 706


>gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 782

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 265/743 (35%), Positives = 405/743 (54%), Gaps = 35/743 (4%)

Query: 1   MTEHIISSDEEEEK--GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I   + E     G  +  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MNDTIDDPNMEAPGVGGEVAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMRELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  LL+ L +D VDFR NYDG+ +EPVVL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRDNYDGTLREPVVLPATFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E+ D C+ +I  PD   D L+  + GPDFPTG VI+     I
Sbjct: 181 ASGIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPESI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    IE     + QIVVTEIPYQV K+ ++EK+AEL++ K+I  + 
Sbjct: 241 AQAYRTGRGSFRLRCKYEIEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQTKKIPILG 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      ++    +    +V++N LYR + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESADDIRLILEPRSKNVDPEVLMNMLYRNSDLELRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R+EV++RR+++ + K   R  VL G  +A  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+ +W    ++       ++ Y     G   LSEVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMRENWGIDHVRA----TSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMED 529
            ++L  E     D+L+        I ++L   K +         RRTR  E   + ++  
Sbjct: 474 RDALMEERAGLEDLLADEGLQWASIAEQLKETKKKFGKDYEGGARRTRFAEAGAVEEVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G++        RA          +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G VY      LP G  +  G+ L  ++ L    +I  I+             ++
Sbjct: 586 LIFASNGRVYTVSAANLPGG--RGMGEPLRLMVDLPNEAQIVDILI------HKPGRKLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       + +   R+GK  + +   +  +  +     + + + ++ G+ + FP
Sbjct: 638 VASDAGNGFIVPEDEVLAQTRNGKQVLNVKDDERAVICKPVAG-DHVAVVSQNGKFLVFP 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +S +        V ++  ++A+G
Sbjct: 697 VSELPEMTRGKGVRLQKYNMARG 719



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + +L  S+ G G      +     R+GK +      +   I   VA       D 
Sbjct: 629 IHKPGRKLLVASDAGNGFIVPEDEVLAQTRNGKQVLNVKDDERAVICKPVA------GDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS  G  +  PV+E+   +R  KGV +  
Sbjct: 683 VAVVSQNGKFLVFPVSELPEMTRG-KGVRLQK 713


>gi|291457735|ref|ZP_06597125.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
 gi|291380788|gb|EFE88306.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
          Length = 906

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 283/961 (29%), Positives = 453/961 (47%), Gaps = 142/961 (14%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ +PD  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 TRLMA--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+    D+  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDHVVTSEMDEAVDKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRA------------QRRGGKGRSGVVMRDE-------- 574
           +      +S          +   +            ++ G +      ++ E        
Sbjct: 514 QGSGTSGISKSALEAVKSATTISSAEADVAAAAAAAKKTGEQSALTGALKIEDEPCVVMM 573

Query: 575 -----------------------------DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                        D +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNSRSASDERLHDDQITTIFRTSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPFPEDESSWNN--------- 645
           LP     A      G    +++S+ +      GER+ T +   +   +  N         
Sbjct: 634 LPALPASATLSLQGGVQADDLISMTESTDPVRGERVVTAIAMEQSADNGENGGDGETTAE 693

Query: 646 ----LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                 +   T++G V+R        ++      + +   DE++       ++ ++  + 
Sbjct: 694 AKPLPSLAIGTRNGVVKRWNREAPTTMDS--WPVIDVKDGDEVVFAAVAENDDRLVFVSS 751

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
               + F    +R   GR + G+ GI LA+G  V++  +V      +        +   +
Sbjct: 752 DSSLLTFDAKNVRP-QGRTAGGMAGIKLAEGAHVMAFNVVPAGKVAW-------TYEEGE 803

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
             L SG    + ++  D                      L  +E G  K T    +    
Sbjct: 804 NGLTSGAGAVVLTVAGDEDA-------------------LPGTENGAAKVTPLEMYPTKG 844

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+  G+R+    K      L  V P      +   +  G+ + +P  ++R   R   GV 
Sbjct: 845 RATGGVRSQRFLKGQNTLILAWVGPYP----LHASTSAGSPVELPKPDMR---RDGSGVD 897

Query: 882 I 882
           +
Sbjct: 898 L 898


>gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC
           824]
 gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018]
          Length = 954

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 305/936 (32%), Positives = 483/936 (51%), Gaps = 88/936 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I   +  ++  I  + + + M  +YL YA+ V   RA+PD+RDGLKPVHRRI++G 
Sbjct: 1   MAKKI---NIPKDSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++Y+++  +AQ+++ R  LI+G GN+GSV
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +++D+ KD VD   NY GS +EP VL A YPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+D  +  IDN D+ ++ LME ++GPD PTG +I+G+  +  A
Sbjct: 178 GIAVGLSTNIPPHNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGGIIIGKNSLIAA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IE+    R  IV++E PY+ NKA +L+ I+E+  +K+    +  I
Sbjct: 238 YETGEGKVTLRARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESI 297

Query: 297 ADLRDESDRQGYRVVIELKRGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR+G R VIE K+ +  D    IL  L++ T LQ   + NMVAL   KPE   
Sbjct: 298 SDIRDESDRRGIRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALADGKPETMG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  R+++V RRTK+ LN AR R +++ G   A+  +DE++  IR S + + +
Sbjct: 358 LKTIIGHYVNHRKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDS 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +  Q  AI+EL L +LTGL  +  
Sbjct: 418 ENNLVAK--------------------------FGFNNEQATAIVELMLYKLTGLEIETF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
           + E + L   IK+   ILS    LL ++K EL  V+ +    RRT IVE   +  ++ E+
Sbjct: 452 KKEYDELSKLIKKLEKILSDEKELLRVVKNELKEVEKKYGEDRRTSIVEDDSEAKIDVEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             V ED+VVT+S+ GY+K VP   Y    R     S +  R+ DF   L   +T  ++L 
Sbjct: 512 FTVVEDIVVTMSNDGYIKSVPKKTYL---RSNSDVSDIEYREGDFNRFLIETNTAHNLLM 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQG-ERITTIMPFPEDESSWNNLYVV 649
           F+  G +YK +   +P    + +G+ + N++  ++ G E+I  I      ES      ++
Sbjct: 569 FTDEGNMYKLRGNSIPEYKWKEKGEKIDNLIKGIDLGKEKILNIYSV---ESLTEQKDII 625

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCV 706
           F T  G++++  L  F  I     +A+KL   ++++  E      +E  I ++T+ G   
Sbjct: 626 FITDRGSLKKTSLDKFDTIYSK-IMALKLKKDEKLIKAELVLRTREEGFIKVSTEKGLDF 684

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                 I     RN +G + IS+   D+++S   V + D            +   +   S
Sbjct: 685 TVREPLIEEM-DRNKMGHQCISVCPMDRIVSSEFVENDDYRTFGIQINKNGIIKTKASSS 743

Query: 767 GDTEEITS--------------------LKNDSSVEGNISEERCQ-------------EL 793
           G+  + T+                     KN      N+SE  C+             E 
Sbjct: 744 GNYIDTTTSSTLLIFIDDGRVINIPSYMFKNMDDKVLNLSELYCEFNSNNKIIKTLSIEE 803

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             + +FI   S KGF K+T   +F  S    KGI      +  E   +      N+ +++
Sbjct: 804 FNENKFIYFFSSKGFVKKTKLSEFVES----KGIEVCYKLRNKEDMLVNVDVSENEEEEV 859

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +L++ K   I+   + + +  +   GV   S  +++
Sbjct: 860 VLITKKAMGIKFLSSSVSVMGKIASGVTGISLNEED 895



 Score = 37.6 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 89/254 (35%), Gaps = 18/254 (7%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI-LSVE-TCTQENDILLTTKLGQCVRFPISAIR 714
           V +N+L +  +     +    ++   E  + VE     E+ ++  +  G     P     
Sbjct: 478 VVKNELKEVEKKYGEDRRTSIVEDDSEAKIDVEEFTVVEDIVVTMSNDGYIKSVPKKTY- 536

Query: 715 VFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
               R++  V  I   +GD    +I      +     DE   Y    ++       +  E
Sbjct: 537 ---LRSNSDVSDIEYREGDFNRFLIETNTAHNLLMFTDEGNMYKLRGNSIPEYKWKEKGE 593

Query: 772 ITS--LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                +K     +  I      E   +++ I+ ++++G  K+TS   F         I A
Sbjct: 594 KIDNLIKGIDLGKEKILNIYSVESLTEQKDIIFITDRGSLKKTSLDKFDTIY---SKIMA 650

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGT--LIRVPVNEIRIASRATKGVVIFSTAK 887
             + K  ++     V    +   I + ++KG    +R P+  I    R   G    S   
Sbjct: 651 LKLKKDEKLIKAELVLRTREEGFIKVSTEKGLDFTVREPL--IEEMDRNKMGHQCISVCP 708

Query: 888 DERVVSVERIRESE 901
            +R+VS E +   +
Sbjct: 709 MDRIVSSEFVENDD 722


>gi|306818810|ref|ZP_07452532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|304648496|gb|EFM45799.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
          Length = 847

 Score =  529 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 296/865 (34%), Positives = 423/865 (48%), Gaps = 117/865 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM------------ 527
           L   I E   IL+S  +L G++++EL      L +PRRT ++E                 
Sbjct: 477 LRAAIAELEAILASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 528 ------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                 E    +  E   +  S  G   R+  SV                     +    
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASV------------SFERPAGIPIAGSC 584

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERIT 631
              T       +S GFV +     LP     A G+ +              +L +GE + 
Sbjct: 585 ETRTRGVFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVV 644

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            I+   EDE       V   T+ G ++R +       NR     + LD  D+++      
Sbjct: 645 GILSLDEDE------IVGIITESGVIKRMRPDYPSTQNRF--PIINLDDTDQVVFAGAAG 696

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            +   +L +   Q +R P SA+R   GRN+ GV G+SL    +V++ AI+          
Sbjct: 697 DDAQFVLVSTDAQLLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPE-------- 747

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                  L+  S+V   ++          +  +         K 
Sbjct: 748 -----------------------LEVASTVVATVATVMDAMPGANQSSV---------KL 775

Query: 812 TSSYDFRISNRSGKGIRATDVSKIN 836
           T    + I  R G+G+RA    K  
Sbjct: 776 TPLDRYPIKGRGGQGVRAQRFLKGE 800



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++E G  KR         NR         +  +++   +V      D+ Q +L
Sbjct: 651 EDEIVGIITESGVIKRMRPDYPSTQNR-------FPIINLDDTDQVVFAGAAGDDAQFVL 703

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           VS    L+R P + +R   R   GV   S   + +V++   + E E+ 
Sbjct: 704 VSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEVA 751



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI     D+++   I+  +      R  Y    +    +   DT+++           
Sbjct: 643 VVGILSLDEDEIVG--IITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV---------- 690

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----- 838
                        +   + VS      RT +   R   R+  G+    +    ++     
Sbjct: 691 ------FAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAI 744

Query: 839 -----GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 A   V  V      +  +++ ++   P++   I  R  +GV      K E  + 
Sbjct: 745 LPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGEYALG 804

Query: 894 VERIRESEIVDEAESTE 910
              + +  +V   + +E
Sbjct: 805 KAFVGQDPVVALGDRSE 821


>gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
 gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
          Length = 774

 Score =  529 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/754 (33%), Positives = 381/754 (50%), Gaps = 64/754 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D    
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL K A  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAV
Sbjct: 121 FAAMRYTESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+ EV   CV ++D P+   D L E ++GPDFPT A +I  R  I+  Y T
Sbjct: 181 GMATDIPPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYET 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R     E       +IVVT++P+QV+   +LE+IA+ ++ K++  +ADLRDES
Sbjct: 241 GRGSLRMRARWINESG-----EIVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDES 295

Query: 304 DRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
           D +     V++        + ++  L+  T L+  + VN+  + N  +P    L  +L  
Sbjct: 296 DHENPTRLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLTE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +++FR   V RR ++ L+K   R H+L GL +A  N+DEV+ IIR+   P   + ELM R
Sbjct: 356 WLSFRRTTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKP---KAELMSR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS  Q  AILEL+L  L  L    IR E + L
Sbjct: 413 --------------------------FGLSGEQAEAILELKLRHLAKLEEMKIRGEQDEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E  E   IL S  RL  +IK ELL+  +     RR+ IVE        + + +  + +
Sbjct: 447 SAERDELQSILGSEDRLRELIKDELLADAETYGDDRRSPIVERREAKAFSETELVSNDPV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G+V        RA +       G+  +  D          +   +F  S G  
Sbjct: 507 TVVLSEKGWV--------RAAKGHDIEPEGLSYKAGDAFAMAAKGRNNQQAVFLDSTGRA 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y       P  S + +G+ L   ++   G   + ++             V+  T  G   
Sbjct: 559 YSLVAHTFP--SARGQGEPLSGRINPPSGATFSGLLM------GDPARRVLLVTDGGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRV 715
              L D I  NR+GK  + +    +I+S       +    +   +  G+ + FP+S +  
Sbjct: 611 VTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKPLYLGAISNEGRMLVFPLSELPE 670

Query: 716 FAGRNSVGVRGISLA----KGDQVISMAIVLHAD 745
            A      +  I  A    + + V+++A+    D
Sbjct: 671 LAKGKGNKIISIPSARVQNREEYVVAVAVFAEDD 704



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + +L V++ G+G  TS  D    NR+GK + +       +   +++   V ++D+
Sbjct: 593 MGDPARRVLLVTDGGYGFVTSLDDMISKNRNGKAVVSV-----PKGAKIMSPVVVPNSDK 647

Query: 853 ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIV 903
              +  +S++G ++  P++E+   ++  KG  I S        ++E VV+V    E + +
Sbjct: 648 PLYLGAISNEGRMLVFPLSELPELAKG-KGNKIISIPSARVQNREEYVVAVAVFAEDDQL 706

Query: 904 D 904
           +
Sbjct: 707 E 707


>gi|183601381|ref|ZP_02962751.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191120|ref|YP_002968514.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196526|ref|YP_002970081.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218987|gb|EDT89628.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249512|gb|ACS46452.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251080|gb|ACS48019.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794109|gb|ADG33644.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 891

 Score =  529 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 287/926 (30%), Positives = 440/926 (47%), Gaps = 122/926 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +   + Y+
Sbjct: 17  EEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYM 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 77  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMATN+ T
Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG +  R 
Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRS 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +DR    R+V
Sbjct: 256 ATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R           
Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I E   IL
Sbjct: 425 ---------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERIL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
            S + L G++  E+        TPRRT +++   D                         
Sbjct: 470 GSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHA 529

Query: 527 ------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
                               +   I  E  V+ +S  G + R+ +          +G   
Sbjct: 530 ENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDALTIW--AKRGAHT 587

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILS 623
                +D +  L    T       +S G +    V  LP            G     +L+
Sbjct: 588 EKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLT 647

Query: 624 LN------QGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
                    GER+   +   +    D+++     V   T++G V+R        ++    
Sbjct: 648 STESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMDSWSI 707

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I   L   DE+L       ++  +  +     + +    +R   GR + G+ GI LA G 
Sbjct: 708 ID--LKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRTAAGMAGIHLADGC 764

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S A+V HAD ++ +     +H  A   L       + ++  D               
Sbjct: 765 TVLSCAVVAHADVEWHDA----EHDDAGNLLSPASGAVVLTVAGDVDA------------ 808

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAVFPVNDND 851
                  L  +E G  K T    +    R+  G+R+    K       A V  +P     
Sbjct: 809 -------LPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKGQNTLIRACVGSYP----- 856

Query: 852 QIILVSDKGTLIRVPVNEIRIASRAT 877
            ++  +  G  + +P  ++R     T
Sbjct: 857 -LLAATSGGHPVELPAPDMRRDGSGT 881



 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 76/261 (29%), Gaps = 37/261 (14%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +   V+  +  G + R  +       + G    K +  D I+S+       D  L T  
Sbjct: 555 EDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALVTSA 614

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ V                                 +V   + +    +     + A  
Sbjct: 615 GRMVLAH------------------------------VVELPNLEVTGHLSLTGGIEATE 644

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
            L S ++ +    +   +           +   +   +   +  G  KR +       + 
Sbjct: 645 LLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMD- 703

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
                   D+   +E   L+     +D+D+ + VS   +L+      +R   R   G+  
Sbjct: 704 ---SWSIIDLKDGDE---LLVAADAHDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAG 757

Query: 883 FSTAKDERVVSVERIRESEIV 903
              A    V+S   +  +++ 
Sbjct: 758 IHLADGCTVLSCAVVAHADVE 778


>gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555]
 gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016]
 gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555]
 gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 953

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 298/939 (31%), Positives = 468/939 (49%), Gaps = 91/939 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++       E+  I  + I + M ++Y+ YA+ V   RA+PD+RDGLKPVHRRI++G 
Sbjct: 1   MAKNTSIP---EDNNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +     + Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ ++ +I+G GN+GS 
Sbjct: 58  YMLKAFPERPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY GS +EP VL ARYPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV++   A ID  DI  + LME I+GPD PTG +I+GR  +  A
Sbjct: 178 GIAVGLATNIPPHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGGIIIGRQSLICA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G   +R  + IEK    R  IV+TE PY+ +KA +L+ I+E+  +KR    +  I
Sbjct: 238 YTTGEGKATLRAKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPI 297

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE K+      A  +L  L + T LQ     NMVAL   KP    
Sbjct: 298 SDIRDESDRNGIRAVIEFKKSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALADGKPVTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK ++ ++++++ RRT+  L  A+ R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKDILKHYIKYQKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              LM++                             +  Q+ AILEL L RLTGL     
Sbjct: 418 ASNLMEK--------------------------FEFTREQSEAILELMLYRLTGLEIVSF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDED 531
             E   L   IK+   IL S   +L +IK+EL  + ++    R+T     E    ++ ++
Sbjct: 452 EKEHRELLKIIKKLTKILDSEKEILKVIKKELAEIAEKYGEERKTVIIEEEEEAKIDVKE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +V ED+V+T+S   ++KR+ L  Y    R  K       R+ DF   +   ST  +++F
Sbjct: 512 ILVDEDIVITISKEAFIKRISLKSYNRSSREVKDIE---YREGDFNKYVINSSTKDTIMF 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVV 649
           F+  G +YK K   +P    + +G+ L NI+       E I  +    +  S  +    +
Sbjct: 569 FTDKGNMYKIKGMDIPEFKWREKGEKLENIIKGIDLSEENIVAVYSIDDFSSPQD---FI 625

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCV 706
           F T    ++R + + F+    +  +A++L   +E++ V+   +    N I + TK+G   
Sbjct: 626 FFTNMAGIKRTETNAFVT-KYTKLMALRLKKEEELIDVKLVNRNESLNFIKVETKIGLKF 684

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              +  +     RN +     SL KGD+++ M   L  ++ Y+     +      +   S
Sbjct: 685 TVKVPEL-ALEDRNIIANELCSLVKGDKIVKMD--LSEESGYETFYININKSGIIKISNS 741

Query: 767 GDT-----------------------------EEITSLKNDSSVEGNISEERCQELKLKE 797
           G T                             E+I S   +      IS +   ++   E
Sbjct: 742 GRTFKNVFTNSSSNILVFTVCGRVFSMPSFMFEQIESSGINIRELMGISAQDILKMISIE 801

Query: 798 Q----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                +I   ++ G  KRT   +F+  N        T     N    LV V    + ++I
Sbjct: 802 NFDYGYIYFFTKYGMIKRTELNEFKDIN-----GWNTAHKFKNNEDFLVNVEYGKEKNEI 856

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +L+++KG  I+   + I    ++  GV   +   ++ V+
Sbjct: 857 LLITEKGMAIKFQGDSINSMGKSASGVTAINLKGEDSVI 895


>gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB
           8052]
 gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 970

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 311/940 (33%), Positives = 470/940 (50%), Gaps = 91/940 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E+II  D      I  + + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G  
Sbjct: 5   NENIIPKDN----NIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYGSY 60

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            +    ++ Y K ARI G+++GKYHPHG++++Y+++  +AQD+S R  LIEG GN+GS+D
Sbjct: 61  MLKAFPDRPYYKSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGSID 120

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL   A  +L D+ KDTV+  PNY  S  EP VL +RYPN+LVNG  G
Sbjct: 121 GDGAAAMRYTEARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGAFG 180

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG+ATNIP HNLGEV +G +A IDN +I    LM+ I+GPD PTG +++G   I +AY
Sbjct: 181 IAVGLATNIPPHNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILIGEKSILSAY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIA 297
            TG G +  R  + IEK    R  I++TE PY+ NK+ +L+ I+E+  +KR    +  I 
Sbjct: 241 ETGEGKVAYRAKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALESIT 300

Query: 298 DLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           D+RDESDR G R VIELK+ A    AD +L  L++ T LQ   S NMVAL   KPE  +L
Sbjct: 301 DIRDESDRSGIRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVALANGKPETMSL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             I++ +V  ++E++ RRT+  L+ A+ R H++ G   A++ LDEV+  IR S + + A 
Sbjct: 361 KAIIRYYVEHQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSKKDAS 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+ +                             SE Q +AILEL L RLTGL  +   
Sbjct: 421 ENLISK--------------------------FGFSEAQAQAILELMLYRLTGLEIEIFE 454

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDC 532
            E   L   IK+   ILSS   LL ++K EL  + D+    RRT I+  +    ++ E+ 
Sbjct: 455 KEYAQLEKLIKKLEKILSSEKELLKVVKSELKEISDKYGNDRRTEIIHDDNESKIDVEEL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I+ E+++VT+S  G+VKR+PL  Y    R       +  R+ D +  L   +T  ++L F
Sbjct: 515 IIVEEVMVTISKDGFVKRIPLKNY---TRSSSNPEDIEYREGDSLKYLINSNTKDTLLVF 571

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVF 650
           +  GF+Y+ K   +P    + +G  L  I+       E+I   +       S       F
Sbjct: 572 TDKGFMYQTKGINIPEMRWKEKGDRLDEIIKSLNLDNEKIIAAISIDNFNPSKA---FRF 628

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVR 707
            TKHG ++ + L D  Q       A+KL   DE++ V       +E  + + +KLG    
Sbjct: 629 ITKHGGIKLSSL-DKFQTAYGKLQALKLRDGDELIDVSMRELEEEEKFLKVKSKLGLEFT 687

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             I  +     RN +  +  + ++ D++  +      +          K+       I  
Sbjct: 688 LEIKNLEE-TARNILPTQLFNFSEEDEISQVEDTNEIEYFELSVGVTDKNKFKFYERIKE 746

Query: 768 DTEEITS--------------------------LKNDSSVEGNISEERCQEL-------- 793
           D+ ++ +                          L  + +VE  I +    E         
Sbjct: 747 DSLKVKTNSLKELLIFSNRGYVYKIPVFLMRNVLNKEINVEAFIGKMEKGEKIISLISID 806

Query: 794 -KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              ++  + T ++KG  K+T   +F                  ++    V +  +     
Sbjct: 807 SYDEDLGVYTFTKKGMVKKTLLKEFEGDF---LKQACYKFKFEDDEVVSVEMNQIKIGHL 863

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           I+ ++ KG  IR PV  + I  +   GV   S   +++V+
Sbjct: 864 IM-ITKKGMAIRFPVENVNIMGKIASGVTGISLRDEDQVI 902



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 22/234 (9%)

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL---INILSLNQGERITTIMPFP 637
              ++   +L FS+ G+VYK  V+ +         K +     I  + +GE+I +++   
Sbjct: 751 VKTNSLKELLIFSNRGYVYKIPVFLM----RNVLNKEINVEAFIGKMEKGEKIISLISI- 805

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET-CTQENDI 696
             +S   +L V   TK G V++  L +F                DE++SVE    +   +
Sbjct: 806 --DSYDEDLGVYTFTKKGMVKKTLLKEFEGDFLKQACYKFKFEDDEVVSVEMNQIKIGHL 863

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           ++ TK G  +RFP+  + +   + + GV GISL   DQVI                 Y K
Sbjct: 864 IMITKKGMAIRFPVENVNIMG-KIASGVTGISLRDEDQVI----------FGKYHSNYKK 912

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                  L S DT+     K       +IS+ + Q    +   I+ VS     K
Sbjct: 913 SDDNTVMLSSDDTKITLVSKGKERSVMDISDIKLQNRAGRGTSIMMVSLDDEIK 966


>gi|210612463|ref|ZP_03289321.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
 gi|210151571|gb|EEA82578.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
          Length = 744

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 263/763 (34%), Positives = 415/763 (54%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 2   QDSQIIRTEYSDIMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL K  VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLAKLTQEVFLADLDKGVVDFAPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D   A + N +I    LM+ I+GPDFPTG +++ +  + N Y TG G I I
Sbjct: 182 PTHNLGEVIDAVKAYMKNSEITTKQLMKHIKGPDFPTGGIVVNKDDLLNIYETGSGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G ++++V++EIPY +        L  +A LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEELKGGKKRLVISEIPYTMIGAGIGKFLNDVASLVESKKTNDITDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  + + N LY+ T L+  F VNM+A+   KPE   L  I++  V F+ +
Sbjct: 302 IRIVLELRKDADVENLKNMLYKKTRLEDTFGVNMLAVANGKPETMGLKSIIEHHVDFQFD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V  R+ K LL K  D+  +  GL  A   +D ++ I+R S + + A+  L          
Sbjct: 362 VATRKYKTLLAKELDKKEIQEGLIKACNVIDLIIEILRGSKSIKEAKACLTDGITENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I        +      +  +E Q  AILE+RL +L GL  + ++ E       I   
Sbjct: 422 KSNI--------SKKMASMLRFTERQATAILEMRLYKLIGLEIEALQAEYEQTLKSIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L ++K      RRT +      + +E  I  +++V  +   GY
Sbjct: 474 EDILNNYDSMAEVIIEDLDAIKKTYARKRRTIVENAEEAVFEEKKIEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + V +S Y   R      +            +        +  F++ G +++ KV  +P
Sbjct: 534 ARTVDVSTYERNREAADSENKY----------IVSCLNTGKICLFTNAGKMHQVKVPDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + N  E     + F  DE S +   ++FATK G +++   S+F Q
Sbjct: 584 YGKFRDKGTPIDNLSNYNSTEE---QIVFVCDEGSLSMAKLLFATKQGMLKQVDGSEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   DE++ V+  T+   I+L T  G  +RF  + +     + +VGVRGI
Sbjct: 640 VAKRTIAATKLLEEDEVICVQVVTEGQSIVLQTMNGYFLRFASTEVPEK-KKGAVGVRGI 698

Query: 728 SLAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISG 767
            L K D++  + ++         Y E+   +  +   RR   G
Sbjct: 699 KLQKKDELEQVYLLEEGVEQKVLYKEKEVTLNRLKLARRDGIG 741



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E  L    +L  +++G  K+    +F+++ R          +K+ E   ++ V  V +
Sbjct: 611 CDEGSLSMAKLLFATKQGMLKQVDGSEFQVAKR------TIAATKLLEEDEVICVQVVTE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              I+L +  G  +R    E+    +   GV      K + +  V  + E
Sbjct: 665 GQSIVLQTMNGYFLRFASTEVPEKKKGAVGVRGIKLQKKDELEQVYLLEE 714


>gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7]
 gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7]
          Length = 754

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 246/805 (30%), Positives = 400/805 (49%), Gaps = 74/805 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KVYETGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L++ + VN+  +    KP+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+    
Sbjct: 352 QLLSEWLQYRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LSEVQ   IL+ RL +L  L    IR 
Sbjct: 410 -LMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L  E K    +L S ++L  ++++EL+   +     RR+ IV       + + + +
Sbjct: 443 EQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDD-----DALYVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +   +++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +G+ G  +A  ++ ++   VL A A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQEL 793
            +++   K +    GN      Q +
Sbjct: 719 GDDLEHYKGERGRRGNKLPRGFQRV 743



 Score = 45.7 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +          A+VA  PV 
Sbjct: 590 ECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAAVVAPRPVR 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D   D +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DVEQDWLAAVTTEGRLLLFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus
           TK-6]
          Length = 761

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 296/860 (34%), Positives = 453/860 (52%), Gaps = 124/860 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT+V+I +E++ SY+ YA++VI+GRAIPD RDGLKPV RRIL+ M QMG+   K +VK 
Sbjct: 2   EITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G V+G YHPHG+ A+YDAL RMAQD+++R  LI GQGNFGS+DGDPPAA RY+E +
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAK 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L+D+ ++TVDF PN+DGS  EP +L +++PN+L NG  GIAVG+AT+IP HN
Sbjct: 122 LSKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV    + +  NP+I  + +M+ I+GPDFPTG ++     +   Y TGRG + +R  +
Sbjct: 182 LKEVCSALIELAKNPNISTEEIMKRIKGPDFPTGGIVENYQELIEYYHTGRGHVRVRAKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EK  G REQIV+TEIPYQVNKA +++++AELVRE ++ +I+++RDESD++G R+VIEL
Sbjct: 242 HVEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +L +LY++T+L+  F +N V L   +P++  +  +L+ F+  R EV++RR K
Sbjct: 302 KRDAQGQKVLEKLYKHTALRKNFPINFVVLIDNQPKQVGIKELLQEFLRHRLEVILRRAK 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DR H++ GL  A+ +LD+V++ IR S +   A+ +LM+               
Sbjct: 362 HHLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMKN-------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q  A+L++RL RLT L    +  E   L   I+    ++SS 
Sbjct: 408 ------------YTLSERQANAVLDMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISSE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +  QE+  +  E  +PRR+ ++    +       V +  V+  S+          
Sbjct: 456 EERIKVFIQEMEEIVKEFPSPRRSFVLGFENE------EVGQITVIIYSN---------- 499

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                   GK      M++E  V D+  V     +   S+ G VY     +   GS  + 
Sbjct: 500 --------GKIMPLEEMQEEGQVVDVLDVPFSEGLFMVSNRGRVYWIAGSQALQGSKVSF 551

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                        E +           S  +  ++  TK G V++  + DF    +   I
Sbjct: 552 ---------KEADESVVGAFV-----RSQASHRIILITKRGYVKKIPIVDFEYKTQGMSI 597

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
               +  DE++ V    +E DILL T+ G+ +RFPI  I       S GV GI L   D 
Sbjct: 598 IKFSEEEDEVVKVLQSPEEGDILLLTRKGKMLRFPIRDIPPATV-GSKGVIGIKLEGDDT 656

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +IS   +                                                     
Sbjct: 657 LISARAITDF-------------------------------------------------- 666

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               ++L +++KG  K+ ++ D     R  KG+ AT  +K    G  V + P+ ++ +++
Sbjct: 667 ---PYLLLITQKGAVKKINAKDIPARGRGSKGMTATARTK----GDAVDIVPIKESVELM 719

Query: 855 LVSDKGTLI--RVPVNEIRI 872
           + + +G +   R+   EI +
Sbjct: 720 IATQEGKVFYDRLEEREIPL 739



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 19/239 (7%)

Query: 668 INRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           I  +GKI     +    +++ V        + + +  G+      S     +        
Sbjct: 496 IYSNGKIMPLEEMQEEGQVVDVLDVPFSEGLFMVSNRGRVYWIAGSQALQGSK------- 548

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +S  + D+ +  A V    +    RI  +      +++   D E  T   +        
Sbjct: 549 -VSFKEADESVVGAFVRSQAS---HRIILITKRGYVKKIPIVDFEYKTQGMSIIKFSEEE 604

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E        +E  IL ++ KG   R    D   +    KG+    +   +    L++  
Sbjct: 605 DEVVKVLQSPEEGDILLLTRKGKMLRFPIRDIPPATVGSKGVIGIKLEGDD---TLISAR 661

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + D   ++L++ KG + ++   +I    R +KG+   +  K +   +V+ +   E V+
Sbjct: 662 AITDFPYLLLITQKGAVKKINAKDIPARGRGSKGMTATARTKGD---AVDIVPIKESVE 717


>gi|160914999|ref|ZP_02077212.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
 gi|158432798|gb|EDP11087.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 283/850 (33%), Positives = 433/850 (50%), Gaps = 93/850 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I +  + + M + + +Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K
Sbjct: 9   EHDNSTIIATPLEEIMGSRFGSYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNLWDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +R   I+ QGN GS+D DP AA R
Sbjct: 69  AYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRHPQIDMQGNNGSIDDDPAAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K + +LL D+ KDTV +  N+D +  EP VL A YPN+LVNG  GIA G ATN
Sbjct: 129 YTEARLGKISEYLLKDIEKDTVTWSLNFDDTAYEPTVLPASYPNLLVNGITGIAAGYATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +   +  I NP   L+ LME + GPDFPTGA++ G  GIK+A+ TG+G I+
Sbjct: 189 IPPHNLNEAIQATIYRIRNPKCSLEELMEYMHGPDFPTGAIVQGIDGIKDAFRTGKGRIM 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+T    +QI+V EIPY+V K+ M++KI E+   K+I  I D+RDESDR G R
Sbjct: 249 IRSKVSIEQTKT-IQQIIVHEIPYEVVKSNMVKKIDEVRLNKKIEGILDVRDESDRNGLR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI++K+ A A +ILN LY+ T LQ  ++ N+VA+   +P +  L+ +L AF+A R EV+
Sbjct: 308 VVIDIKKDADAQLILNYLYKNTDLQVSYNYNVVAIVNKRPVQMGLVAMLDAFIAHRVEVI 367

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R++Y L+K   R H+L GL  A++ LDE++ +IR S +   ++R++++          
Sbjct: 368 EKRSRYDLDKKEKRCHILEGLIRAISVLDEIIALIRSSKDKADSKRKIIE---------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ +RL RL+      ++ E   L  EI     
Sbjct: 418 ----------------AFSFSEEQAEAIVTMRLYRLSSTDITLLQEESEQLQKEIAHLHC 461

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR--IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL     L  ++ QEL +V     TPR T+       + ++    I  E ++ T+S  GY
Sbjct: 462 ILDDPKVLRKVMIQELKAVNTAFPTPRLTKIEETIEEIVIDKLAMINEEQVMFTLSRDGY 521

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KRV L  Y A      G     +++ D +     VST   +LFF+++G      V+ L 
Sbjct: 522 AKRVSLRSYNASSDSLCG-----LKEGDRLIGCGEVSTLDKILFFTNMGTYGYVPVYELE 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-I 666
               +  G  L   + +   E+IT        +S  +  YVV  T+ G ++++ LS++ +
Sbjct: 577 EAKWKDVGTHLNAGIRMRGEEKITDAFVV---KSFQSQAYVVSVTRMGLIKKSALSEYEV 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             N      MKL   DE++        ++I + ++ G  VR+P+  +       S GV+ 
Sbjct: 634 SRNNKTMSNMKLLDGDEVIRSFIAYDGDEIFIASETGFAVRYPL-DMVPLTSPRSKGVKA 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D VI  A + H D                                         
Sbjct: 693 MKLV--DDVIGDACIYHQD----------------------------------------- 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + ++  S+ G  KR    +  I+ R  KG         ++   +  +  
Sbjct: 710 ----------NKQLVVFSKNGAVKRMKLSEIEITGRPAKGNMLCK-KVKSKPYKIAHLQM 758

Query: 847 VNDNDQIILV 856
            + ND++ ++
Sbjct: 759 YDLNDEVYIM 768



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 13/243 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               +   ++ G  +R  L      N S      L   D ++     +  + IL  T +G
Sbjct: 509 EEQVMFTLSRDGYAKRVSL---RSYNASSDSLCGLKEGDRLIGCGEVSTLDKILFFTNMG 565

Query: 704 QCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                P+  +   A    VG     GI +   +++    +V    +     +  +  M  
Sbjct: 566 TYGYVPVYELEE-AKWKDVGTHLNAGIRMRGEEKITDAFVVKSFQSQA--YVVSVTRMGL 622

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFGKRTSSYDFRI 819
            ++    + E   + K  S+++    +E  +         I   SE GF  R       +
Sbjct: 623 IKKSALSEYEVSRNNKTMSNMKLLDGDEVIRSFIAYDGDEIFIASETGFAVRYPLDMVPL 682

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           ++   KG++A  +   + IG         DN Q+++ S  G + R+ ++EI I  R  KG
Sbjct: 683 TSPRSKGVKAMKLVD-DVIGDACIYHQ--DNKQLVVFSKNGAVKRMKLSEIEITGRPAKG 739

Query: 880 VVI 882
            ++
Sbjct: 740 NML 742



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 78/209 (37%), Gaps = 23/209 (11%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
               +E  +   ++ G   R  + +       N+       L +GD++I    V   D  
Sbjct: 505 AMINEEQVMFTLSRDGYAKRVSLRSY------NASSDSLCGLKEGDRLIGCGEVSTLDKI 558

Query: 746 ------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                   Y     Y    +  + + +     I     +   +  +      +    + +
Sbjct: 559 LFFTNMGTYGYVPVYELEEAKWKDVGTHLNAGIRMRGEEKITDAFVV-----KSFQSQAY 613

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +++V+  G  K+++  ++ +S R+ K +    +   +E   ++  F   D D+I + S+ 
Sbjct: 614 VVSVTRMGLIKKSALSEYEVS-RNNKTMSNMKLLDGDE---VIRSFIAYDGDEIFIASET 669

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           G  +R P++ + + S  +KGV       D
Sbjct: 670 GFAVRYPLDMVPLTSPRSKGVKAMKLVDD 698


>gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1]
 gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1]
          Length = 752

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/812 (30%), Positives = 406/812 (50%), Gaps = 74/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT A I+  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E        +VVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KMYESGRGSIRMRAVYRVEDGD-----VVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       AD ++  L+  T L+S + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A  
Sbjct: 352 TILVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            L+E+Q   ILE RL +L  L    IR 
Sbjct: 410 -LIAR--------------------------FELTEIQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +L S ++L  +++ EL+   +     RR+ IVE      + + + +
Sbjct: 443 EQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVERAEAKALSENELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +   
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLPAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDD-----DALYVVASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +GV G  +A  ++ ++   V+   A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            +++   K +    G+      Q +   +  +
Sbjct: 719 GDDLEHYKGERGRRGSKLPRGFQRVDGLQVEV 750



 Score = 44.5 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GKG+ +            VA     
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVA---DR 646

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + D +  V+ +G L+   V+++    +  KG  I      +RV S    RE  + D A  
Sbjct: 647 EQDWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGV-PGDRVAS----REEFVTDLAVI 700

Query: 909 TE 910
            E
Sbjct: 701 PE 702


>gi|227431864|ref|ZP_03913888.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352406|gb|EEJ42608.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 812

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 255/833 (30%), Positives = 409/833 (49%), Gaps = 45/833 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q    ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDRNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P   L  LM  ++GPDFPTG ++ G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGIVQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I      +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF++FR+EVV++R+
Sbjct: 303 LSKEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+               
Sbjct: 363 AYELTKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINH------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E + L  +I     I+  
Sbjct: 410 -------------FEFTQAQAEAIVTLQLYRLTNTDVTQLEEEFSQLNDKINRLNQIIHE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I++E+ ++     +PRR+ I   + +  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ESALKDVIREEIKAITKAYSSPRRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++A        +   + ++D V     ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSFKASD------NENGLAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+     L + ++ E +   +     E           +  G +++  L D +    
Sbjct: 571 KDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGA---FTIVSNDGFIKQTTLVDIVPKAY 627

Query: 671 SGKIAMKLDSRDEILSVETC-----TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             K +M +  + ++  V         +  ++LL +  G  +R+ I  +     R S GV+
Sbjct: 628 KKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHKGVGLRYAIKEVPEIGSRTS-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D + +   +                      LI+        +   +  +   
Sbjct: 687 AMDLRDDDTIKAALFITDDKQSVAIVAENGAFKYMPVSLINHSKRGNKGVLVFTQKKTVA 746

Query: 786 SEERCQELKLKEQFILTVSEKGFGKR-TSSYDFRISNRSGKGIRATDVSKINE 837
            +     +       L+V  K +  +     D+  S R G G    D  K  E
Sbjct: 747 YKVATATIFDSNVKALSVLTKRYQIQELELSDYHESQRIGNGQYVVDTDKNGE 799



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 83/246 (33%), Gaps = 21/246 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    RS   A        I +  T  +E+  +L ++ G   R  + + +     N  
Sbjct: 473 KAYSSPRRSVIEAEV--ENLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENG- 529

Query: 723 GVRGISLAKGDQVI--------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                 LA+ D V+        +   +     +   R  +    +  +      ++++++
Sbjct: 530 ------LAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKWKDTGEHFSQQLSN 583

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              D  V   I+ +  ++          VS  GF K+T+  D        K   A  + K
Sbjct: 584 WDKDEVVIKAIAVDNLEQGGA----FTIVSNDGFIKQTTLVDIVPKAYKKKSSMAIKLKK 639

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                  VA F       ++L+S KG  +R  + E+      T GV       D+ + + 
Sbjct: 640 DVSYVVNVAYFQNVKRQNVLLLSHKGVGLRYAIKEVPEIGSRTSGVKAMDLRDDDTIKAA 699

Query: 895 ERIRES 900
             I + 
Sbjct: 700 LFITDD 705



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 16/247 (6%)

Query: 649 VFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +++G  +R  L  F    N +G     L   D ++   T    N + + T  G  + 
Sbjct: 505 VLVSRNGYYKRASLRSFKASDNENG-----LAEDDLVVFQGTLNTTNHLFMFTNKGNVIY 559

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +         G    + +S    D+V+  AI +                  ++  
Sbjct: 560 RPVHEL-PDTKWKDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGAFTIVSNDGFIKQTT 618

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQEL----KLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +     +    K+  +++          +     +K Q +L +S KG G R +  +    
Sbjct: 619 LVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHKGVGLRYAIKEVPEI 678

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                G++A D+   ++     A+F  +D   + +V++ G    +PV+ I  + R  KGV
Sbjct: 679 GSRTSGVKAMDL--RDDDTIKAALFITDDKQSVAIVAENGAFKYMPVSLINHSKRGNKGV 736

Query: 881 VIFSTAK 887
           ++F+  K
Sbjct: 737 LVFTQKK 743


>gi|296111946|ref|YP_003622328.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833478|gb|ADG41359.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 812

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 258/837 (30%), Positives = 416/837 (49%), Gaps = 53/837 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GS+D DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSIDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+      ++D+P+  L  LM  ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALTYLLDHPEAPLSTLMRYVKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I +  G +++I VTE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TAISELKGGKKKIEVTELPYEVVKSNLVSKIDGIRLNKEVAGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF+ FR+EVV++R+
Sbjct: 303 LTKDANAEGILTYLFKKTDLQIAYNFNMVAIHDQRPVHVGLKQGLQAFLGFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LD+VV  IR S N   A + L+ +             
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDQVVATIRASKNRRDATQNLITQ------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E  +L  +I     I++ 
Sbjct: 410 -------------FQFTQPQAEAIVTLQLYRLTNTDVTQLEEEFATLAAKIDRLTLIINE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I+ E+ ++     + RR+ I   + D  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ASALNDVIRDEITAITTSYRSQRRSEIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A        S   + D+D V     ++T   +  F++ G +    V  LP    
Sbjct: 517 SIRSYKASD------SDNGLADDDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+     L + +  E +         ++          +  G +++  L+D +    
Sbjct: 571 KDTGEHFSQQLSNWHADEFVIQAAVV---DTLDQGGAFTIVSNDGFIKQTTLNDMLPKAY 627

Query: 671 SGKIAMKLD---SRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             K AM +        +++V     T   ++LL +  G  +RF ++ +     R + GV+
Sbjct: 628 KKKTAMAIKLKTDASYVVNVSYFKATATPEVLLLSHHGIGLRFKLTDVPEIGPRTA-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D +++   +     D  +++  +    A + +   +            +    
Sbjct: 687 AMDLRGDDLIMAALFI----TDKTQQVAIVARNGAFKYMPISEINMSKRANKGLLIFTQK 742

Query: 786 SEERCQE-----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                           E  +  ++ +   +     D+R S R G G    DV K  E
Sbjct: 743 KTVAYHVATATIFGNNETALEILTTRWQTQNLQLSDYRPSQRVGNGQYVVDVKKNGE 799



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 80/244 (32%), Gaps = 23/244 (9%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +    RS   A   +  D ++       +E+  +L ++ G   R  I + +     N   
Sbjct: 475 YRSQRRSEIEA---EVEDLVIDTAVTIAEEDVQVLVSRNGYYKRSSIRSYKASDSDNG-- 529

Query: 724 VRGISLAKGDQVIS--------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                LA  D V+            +     +   R  +    S  +      ++++++ 
Sbjct: 530 -----LADDDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKWKDTGEHFSQQLSNW 584

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             D      + +    +   +      VS  GF K+T+  D        K   A  +   
Sbjct: 585 HADE----FVIQAAVVDTLDQGGAFTIVSNDGFIKQTTLNDMLPKAYKKKTAMAIKLKTD 640

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                 V+ F      +++L+S  G  +R  + ++      T GV       D+ +++  
Sbjct: 641 ASYVVNVSYFKATATPEVLLLSHHGIGLRFKLTDVPEIGPRTAGVKAMDLRGDDLIMAAL 700

Query: 896 RIRE 899
            I +
Sbjct: 701 FITD 704


>gi|227875501|ref|ZP_03993641.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843837|gb|EEJ54006.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 847

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 295/865 (34%), Positives = 423/865 (48%), Gaps = 117/865 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM------------ 527
           L   I E   +L+S  +L G++++EL      L +PRRT ++E                 
Sbjct: 477 LRAAIAELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 528 ------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                 E    +  E   +  S  G   R+  SV                     +    
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASV------------SFERPAGIPIAGSC 584

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERIT 631
              T       +S GFV +     LP     A G+ +              +L +GE + 
Sbjct: 585 ETRTRGVFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVV 644

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            I+   EDE       V   T+ G ++R +       NR     + LD  D+++      
Sbjct: 645 GILSLDEDE------IVGIITESGVIKRMRPDYPSTQNRF--PIINLDDTDQVVYAGAAG 696

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            +   +L +   Q +R P SA+R   GRN+ GV G+SL    +V++ AI+          
Sbjct: 697 DDAQFVLVSTDAQLLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPE-------- 747

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                  L+  S+V   ++          +  +         K 
Sbjct: 748 -----------------------LEVASTVVATVATVMDAMPGANQSSV---------KL 775

Query: 812 TSSYDFRISNRSGKGIRATDVSKIN 836
           T    + I  R G+G+RA    K  
Sbjct: 776 TPLDRYPIKGRGGQGVRAQRFLKGE 800



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++E G  KR         NR         +  +++   +V      D+ Q +L
Sbjct: 651 EDEIVGIITESGVIKRMRPDYPSTQNR-------FPIINLDDTDQVVYAGAAGDDAQFVL 703

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           VS    L+R P + +R   R   GV   S   + +V++   + E E+ 
Sbjct: 704 VSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEVA 751



 Score = 41.1 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI     D+++   I+  +      R  Y    +    +   DT+++           
Sbjct: 643 VVGILSLDEDEIVG--IITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV---------- 690

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----- 838
                        +   + VS      RT +   R   R+  G+    +    ++     
Sbjct: 691 ------YAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAI 744

Query: 839 -----GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 A   V  V      +  +++ ++   P++   I  R  +GV      K E  + 
Sbjct: 745 LPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGEYALG 804

Query: 894 VERIRESEIVDEAESTE 910
              + +  +V   + +E
Sbjct: 805 KAFVGQDPVVALGDRSE 821


>gi|313897504|ref|ZP_07831047.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
 gi|312957874|gb|EFR39499.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
          Length = 831

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 289/871 (33%), Positives = 452/871 (51%), Gaps = 95/871 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    + S  + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K 
Sbjct: 10  EHHSSVISSPLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKG 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +R   I+ QGN GS+D DP AA RY
Sbjct: 70  YRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV + PN+D +  EP VL ARYPN+LVNG  GIA G ATNI
Sbjct: 130 TEARLGRISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E +D  V  I + D  LD LME I+GPDFPTG ++ G  GI+ A+ TG+G I+I
Sbjct: 190 PPHNLSEAIDAAVYRIQHADCSLDELMEYIQGPDFPTGGIVQGIEGIREAFETGKGRIII 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG ++IE+     +QIV+TEIPY+V K+ M++KI ++   K+I  I D+RDESDR G RV
Sbjct: 250 RGKANIEQ-KKTVQQIVITEIPYEVIKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRV 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++K+ A+A VILN LY+ T LQ  ++ N+VA+   +P +  L  +L AF+  R EV+ 
Sbjct: 309 VVDMKKDANAQVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAPMLDAFIEHRREVIE 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L K  DR H+L GL  AV+ LDE++ +IR S +   ++R +M            
Sbjct: 369 RRSRFDLKKKEDRCHILEGLIKAVSVLDEIIALIRASKDKADSKRRIMD----------- 417

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q  AI+ +RL RL+      +R E  +L  EI+E  DI
Sbjct: 418 ---------------AFAFSDAQAEAIVTMRLYRLSSTDITQLREEYAALLNEIEELHDI 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  ++ +EL  VK    TPR T        + ++    I  E ++ T+S  GY 
Sbjct: 463 LENPKMLKKVMIRELNEVKKAFKTPRLTSIEHEIEEIVIDKLAMINSEQVMFTISRDGYF 522

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV +  Y A R    G     +++ D +     V+T   VLFF++ G      V+ +  
Sbjct: 523 KRVSMRSYGASRDDMTG-----LKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYDVEE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              +  G  + + + ++  E+IT         S   N Y++  TK+G V++  + ++ + 
Sbjct: 578 SRWKEIGSHINSTIRISGEEKITDAFVLR---SFATNAYMISVTKNGLVKKTAVREYEVS 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N      MKL   D ++        ++IL+ +K G   R+P+S I   + R S GV+ +
Sbjct: 635 RNNKTMSNMKLLDGDAVVKTMVAYAYDEILIASKNGFVSRYPVSLIPETSPR-SKGVKAM 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+++S A + H DA                                         
Sbjct: 694 NLV-LDEIVS-ACISHGDASQ--------------------------------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++  +++   KR    D  ++ R  KG         ++   +  +   
Sbjct: 713 ------------LIVFTDQCQMKRIKLSDVDVTGRPTKGSMICK-KVKSKPYQIAHIALH 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           + ND++++++++    ++   +I + S+   
Sbjct: 760 DLNDELVIINEETQ--KILAKDISLMSKDAT 788



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 73/214 (34%), Gaps = 23/214 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-- 745
                E  +   ++ G   R             +       L +GD ++    V   D  
Sbjct: 505 AMINSEQVMFTISRDGYFKRVS------MRSYGASRDDMTGLKEGDHLVGYGEVNTLDHV 558

Query: 746 ------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                   Y     Y    S  + + S     I     +   +  +             +
Sbjct: 559 LFFTTQGTYGYTPVYDVEESRWKEIGSHINSTIRISGEEKITDAFV-----LRSFATNAY 613

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +++V++ G  K+T+  ++ +S R+ K +    +   +   A+V        D+I++ S  
Sbjct: 614 MISVTKNGLVKKTAVREYEVS-RNNKTMSNMKLLDGD---AVVKTMVAYAYDEILIASKN 669

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           G + R PV+ I   S  +KGV   +   DE V +
Sbjct: 670 GFVSRYPVSLIPETSPRSKGVKAMNLVLDEIVSA 703



 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 94/264 (35%), Gaps = 12/264 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              +   ++ G  +R  +  +            L   D ++        + +L  T  G 
Sbjct: 510 EQVMFTISRDGYFKRVSMRSYGASRDD---MTGLKEGDHLVGYGEVNTLDHVLFFTTQGT 566

Query: 705 CVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
               P+  +   +    +G      I ++ G++ I+ A VL + A     I   K+   +
Sbjct: 567 YGYTPVYDVEE-SRWKEIGSHINSTIRIS-GEEKITDAFVLRSFATNAYMISVTKNGLVK 624

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           +  +        +    +    +        +      IL  S+ GF  R        ++
Sbjct: 625 KTAVREYEVSRNNKTMSNMKLLDGDAVVKTMVAYAYDEILIASKNGFVSRYPVSLIPETS 684

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
              KG++A ++        + A     D  Q+I+ +D+  + R+ ++++ +  R TKG +
Sbjct: 685 PRSKGVKAMNLVLDE---IVSACISHGDASQLIVFTDQCQMKRIKLSDVDVTGRPTKGSM 741

Query: 882 IFSTAKDERVVSVERIRESEIVDE 905
           I    K  +   +  I   ++ DE
Sbjct: 742 ICKKVKS-KPYQIAHIALHDLNDE 764


>gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396]
 gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396]
          Length = 759

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 252/746 (33%), Positives = 386/746 (51%), Gaps = 63/746 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+GI    + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ 
Sbjct: 6   EEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAAAKHK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSADDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL ++G+ TVD+ PN+DGS  EP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HNL EV   C+ ++D+P   ++ L E I GPDFP+G  I+  R+ ++  Y TGRGS+ +
Sbjct: 186 PHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRGSVKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R     E        IVVTE+P+QV+ A ++E+IA+ ++ K++  +ADLRDESD +    
Sbjct: 246 RAKYTKEGQD-----IVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V+I       A+ ++  L+  T L+  + VN+  +    +P    L  +L+ ++ FR +
Sbjct: 301 LVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVLLQEWLTFRTQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L K   R H+L GL +A  N+DEV+ IIR    P+     LM+R       
Sbjct: 361 TVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKPKPV---LMER------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+VQ   +L+ +L +L  L    IR E + L  E K+ 
Sbjct: 411 -------------------FGLSDVQAEYVLDTKLRQLARLEEMKIRAEQDELEKERKKL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
            DIL S ++L  ++K EL    +     RR+ IVE        + D I  E + V +S  
Sbjct: 452 EDILGSEAKLRKLVKTELKQDMETFGDERRSPIVERKEAQAFSETDLIASEPVTVVLSEK 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +       G+  +  D         +H + +F    G  Y      
Sbjct: 512 GWV--------RAAKGHDIDAQGLSYKAGDKFLAAAKGRSHQNAIFLDDTGRSYCVAAHS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   ++   G   T ++  P      +++ VV A+  G     +L D 
Sbjct: 564 LP--SARGQGEPLTGRVNPPSGAGFTHVLMGP------DSMKVVLASDAGYGFVARLEDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRNSVG 723
              NR+GK  + L     +       ++N+  L   +  G+ + FP+S +   A      
Sbjct: 616 QSKNRAGKALISLPKGACVSPPILLERQNNPHLVAISNEGRMLVFPVSELPELAKGKGNK 675

Query: 724 VRGI---SLAKGDQVIS-MAIVLHAD 745
           + GI        ++V+S +A+V   D
Sbjct: 676 IIGIPSARAQAREEVMSNLAVVGEKD 701


>gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA3]
 gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08]
          Length = 841

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 264/742 (35%), Positives = 391/742 (52%), Gaps = 57/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MVKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPH +AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D  P A  RYTECR+      ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DAGPAA-MRYTECRMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E+V     ++D+PD  LD +M  + GPD PTG  I+G  G+ +A
Sbjct: 178 GIAVGMATNIPPHNLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGGRIIGLDGVADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F+ N V L   +P    LI +L+
Sbjct: 298 DLTDLANGTRLVIEVKNGINPEALLERLYKLTKLEDSFATNAVCLVEGQPRTLGLIDMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV +RRTK+ L+KA+DR H++ GL +A+ ++D+V+ IIR S +  TAR  +M+
Sbjct: 358 VYLDHRLEVTLRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTRVME 417

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 418 --------------------------AFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVRE 536
           L   I+    I + ++ L  ++  EL  V  +  TPRRT ++     +        +  +
Sbjct: 452 LRERIEGLTLIANDKTELRRVVSGELAEVSAKYGTPRRTVLLGAAPSVAAASVPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +          G         D +      +        +S G
Sbjct: 512 PCWVLLSATGLLARIDSAD----NLPATGDRAS----HDVIISSTRTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  L      A       G  L +++ L + ER   +        S     +  
Sbjct: 564 RLVRAHVVDLASLPMTATAPSVAGGTPLADLVGLEKDERALAVTSL-----SGKGPSLAL 618

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFP 709
            T++G V+R          +     + L   DE++   E    + ++   T+    + FP
Sbjct: 619 GTRNGIVKRVNPELLG---KDSWEIIGLKDGDEVVGALELDDDDLELCFVTQGAALLHFP 675

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
            SA+R   GR+  GV GI    
Sbjct: 676 ASAVRP-QGRSGGGVAGIKAKD 696



 Score = 44.5 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 82/270 (30%), Gaps = 25/270 (9%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              ++   V  +  G + R   +D +             S D I+S    T   D  + T
Sbjct: 507 EVPDDPCWVLLSATGLLARIDSADNLP------ATGDRASHDVIISSTRTTARGDFGIIT 560

Query: 701 KLGQCVRFPISA-IRVFAGRNSVGVRG-------ISLAKGDQVISMAIVLHADADYDERI 752
             G+ VR  +     +     +  V G       + L K ++ +++  +           
Sbjct: 561 SAGRLVRAHVVDLASLPMTATAPSVAGGTPLADLVGLEKDERALAVTSLSGKGPSLALGT 620

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                      L+  D+ EI  LK+   V G +  +              V++       
Sbjct: 621 RNGIVKRVNPELLGKDSWEIIGLKDGDEVVGALELDDDDLELC------FVTQGAALLHF 674

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALV-----AVFPVNDNDQIILVSDKGTLIRVPV 867
            +   R   RSG G+                    +V  V  +   +   + G++   P 
Sbjct: 675 PASAVRPQGRSGGGVAGIKAKDPAIFFGAAPRHGSSVVTVAASSPAVAGKEPGSVKVTPF 734

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERI 897
           N+     RAT G+      K E  + +  +
Sbjct: 735 NQYPPKGRATGGMRCQRFLKGETALVLAWV 764


>gi|307701128|ref|ZP_07638153.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
 gi|307614123|gb|EFN93367.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
          Length = 847

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 295/865 (34%), Positives = 423/865 (48%), Gaps = 117/865 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM------------ 527
           L   I E   +L+S  +L G++++EL      L +PRRT ++E                 
Sbjct: 477 LRAAIAELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 528 ------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                 E    +  E   +  S  G   R+  SV                     +    
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASV------------SFERPAGIPIAGSC 584

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERIT 631
              T       +S GFV +     LP     A G+ +              +L +GE + 
Sbjct: 585 ETRTRGVFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVV 644

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            I+   EDE       V   T+ G ++R +       NR     + LD  D+++      
Sbjct: 645 GILSLDEDE------IVGIITESGVIKRMRPDYPSTQNRF--PIINLDDTDQVVFAGAAG 696

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            +   +L +   Q +R P SA+R   GRN+ GV G+SL    +V++ AI+          
Sbjct: 697 DDAQFVLVSTDAQLLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPE-------- 747

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                  L+  S+V   ++          +  +         K 
Sbjct: 748 -----------------------LEVASTVVATVATVMDAMPGANQSSV---------KL 775

Query: 812 TSSYDFRISNRSGKGIRATDVSKIN 836
           T    + I  R G+G+RA    K  
Sbjct: 776 TPLDRYPIKGRGGQGVRAQRFLKGE 800



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++E G  KR         NR         +  +++   +V      D+ Q +L
Sbjct: 651 EDEIVGIITESGVIKRMRPDYPSTQNR-------FPIINLDDTDQVVFAGAAGDDAQFVL 703

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           VS    L+R P + +R   R   GV   S   + +V++   + E E+ 
Sbjct: 704 VSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEVA 751



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI     D+++   I+  +      R  Y    +    +   DT+++           
Sbjct: 643 VVGILSLDEDEIVG--IITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV---------- 690

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----- 838
                        +   + VS      RT +   R   R+  G+    +    ++     
Sbjct: 691 ------FAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAI 744

Query: 839 -----GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 A   V  V      +  +++ ++   P++   I  R  +GV      K E  + 
Sbjct: 745 LPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGEYALG 804

Query: 894 VERIRESEIVDEAESTE 910
              + +  +V   + +E
Sbjct: 805 KAFVGQDPVVALGDRSE 821


>gi|269977252|ref|ZP_06184225.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
 gi|269934555|gb|EEZ91116.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
          Length = 847

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 295/865 (34%), Positives = 423/865 (48%), Gaps = 117/865 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM------------ 527
           L   I E   +L+S  +L G++++EL      L +PRRT ++E                 
Sbjct: 477 LRAAIAELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 528 ------EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                 E    +  E   +  S  G   R+  SV                     +    
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASV------------SFERPAGIPIAGSC 584

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI----------NILSLNQGERIT 631
              T       +S GFV +     LP     A G+ +              +L +GE + 
Sbjct: 585 ETRTRGVFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVV 644

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            I+   EDE       V   T+ G ++R +       NR     + LD  D+++      
Sbjct: 645 GILSLDEDE------IVGIITESGVIKRMRPDYPSTQNRF--PIINLDDTDQVVFAGAAG 696

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            +   +L +   Q +R P SA+R   GRN+ GV G+SL    +V++ AI+          
Sbjct: 697 DDAQFVLVSTDAQLLRTPASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPE-------- 747

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                  L+  S+V   ++          +  +         K 
Sbjct: 748 -----------------------LEVASTVVATVATVMDAMPGANQSSV---------KL 775

Query: 812 TSSYDFRISNRSGKGIRATDVSKIN 836
           T    + I  R G+G+RA    K  
Sbjct: 776 TPLDRYPIKGRGGQGVRAQRFLKGE 800



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++E G  KR         NR         +  +++   +V      D+ Q +L
Sbjct: 651 EDEIVGIITESGVIKRMRPDYPSTQNR-------FPIINLDDTDQVVFAGAAGDDAQFVL 703

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           VS    L+R P + +R   R   GV   S   + +V++   + E E+ 
Sbjct: 704 VSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEVA 751



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 28/197 (14%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI     D+++   I+  +      R  Y    +    +   DT+++           
Sbjct: 643 VVGILSLDEDEIVG--IITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV---------- 690

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI----- 838
                        +   + VS      RT +   R   R+  G+    +    ++     
Sbjct: 691 ------FAGAAGDDAQFVLVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAI 744

Query: 839 -----GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 A   V  V      +  +++ ++   P++   I  R  +GV      K E  + 
Sbjct: 745 LPELEVASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGEYALG 804

Query: 894 VERIRESEIVDEAESTE 910
              + +  +V   + +E
Sbjct: 805 KAFVGQDPVVALGDRSE 821


>gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
 gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
          Length = 970

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 302/953 (31%), Positives = 475/953 (49%), Gaps = 86/953 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  ++    ++  I   SI++ M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MSKKYMNI--PKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +D  VA IDN DI    LM  I+GPD PTG +I+G   + +A
Sbjct: 179 GIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIIIGEQALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y  G G + +R  + IEK   DR  I++ E PY+ NK+ +L+ I+E+  +K+    + +I
Sbjct: 239 YEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENI 298

Query: 297 ADLRDESDRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+       + +L  L++ T LQ   S NMVA+   KPE   
Sbjct: 299 TDIRDESDRNGIRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIADGKPETLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  ++EVV+RR++  L  A+ R H++ G   A+  +D+++  IR S + + +
Sbjct: 359 LKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             S  Q +AI+EL L +LTGL     
Sbjct: 419 EQNLVNK--------------------------FGFSMEQAQAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
             E  +L  EIK    ILSS   L  ++K+EL  VK++   PRRT IV  +    ++ E+
Sbjct: 453 EKEYKNLEKEIKALEKILSSEKELFKVVKKELEEVKEKYGDPRRTEIVHDDEQAKIDIEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+V+T+S+ GY+KRV    YR   R       +  R+ DF T L   +T  +++ 
Sbjct: 513 LILDEDIVITLSNEGYIKRVADKYYR---RINPKVEDIEYREGDFNTYLLNGNTKDNMMI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ ++  +P    + +G+ L  ++     E+   I+          +   +F 
Sbjct: 570 FTDEGNLYQIRISNIPEMKWKEKGERLDTLIKALDIEK-EKIIDIYITSELLPSKSFMFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQCVRF 708
           T  G ++++ L D  + N S  +A+KL   ++++ ++       E  I + TK G     
Sbjct: 629 TNRGVIKKSSL-DKFKTNYSKLLALKLKDNEKLIDIKLVNTEHIEKYISVITKNGLSFTV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-------------------- 748
            I      + RN +G +  +++  D+V S+  +   D                       
Sbjct: 688 DIP-RIEDSERNIMGTQIFNISDNDEVKSIKYIDKFDMKNFVVNINKNGNIKISNRINHK 746

Query: 749 -----------------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                            ++   Y       + + S   +    + +    E NI      
Sbjct: 747 NFYGCYANSLSRLIIFGEKGNVYYIPAYMIQNIDSKGIKLNDLIDDFKEKEENIVNIYSI 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +   ++ G+ KRT+  +F   N     I+   + K  +    V +F  +D  
Sbjct: 807 SEFSDSTSVYFFTKSGYVKRTNLQEFNAENPC---IKGYKLKKEQDKIINVLLFNNDDKK 863

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            IIL++     IR   N I    +   GV   S   ++ V+  + I + E  D
Sbjct: 864 DIILITKNAMGIRFEANSISYMGKIASGVTGISLRDNDEVIFAQFIDKKEEKD 916


>gi|315604333|ref|ZP_07879399.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314039|gb|EFU62090.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 822

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/823 (33%), Positives = 411/823 (49%), Gaps = 68/823 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H++   E  ++ I+ + ++ EM+ S+L YA++VI  RA+PD RDGLKPV RRILF M Q
Sbjct: 5   DHVVDIPEA-DENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQ 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D 
Sbjct: 64  MGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+  +A  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GI
Sbjct: 123 DGPAAARYTEARMAPSAVDLVTGLDEDTVDFVPNYDNQFMQPEVLPAAFPQLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNI  HNL E + G + ++D+P   +  LM  I GPD P G VI+G  GIK+AY 
Sbjct: 183 AVGMATNIAPHNLCEAIAGVIHLLDHPSASVADLMRYIPGPDLPEGGVIVGLDGIKDAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+   R    IE+ +  +  IVVT++PY V    ++EKI E     R+  I+ +++ 
Sbjct: 243 TGRGAFKTRAKVQIERVTARKMGIVVTQLPYMVGPEKVIEKIKENASAGRLKGISSVQNL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F
Sbjct: 303 TDRVHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V  RR+++ L K  DR H++ GL +A+ ++D+V+ IIR S + E AR  LM   
Sbjct: 363 LDHRLDVTTRRSRFRLGKCEDRLHLVEGLLVAILDIDDVIAIIRSSDDAEVARERLMT-- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q   ILELRL RLT   R ++ +E + L 
Sbjct: 421 ------------------------AFDLSEAQATYILELRLRRLTKFSRIELESERDELV 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED---------- 531
            +I +  +IL     L  ++K+EL  V D L TPRRT ++                    
Sbjct: 457 AKIAQLREILDDPELLRALVKKELREVSDRLGTPRRTLLLASTGSPVGAGADDAALAALP 516

Query: 532 -----------CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                       I  +  VV +S  G + RV          GG           D     
Sbjct: 517 SVSRSGKGLDLQIPDDPCVVVLSSSGALARV---------EGGDPLEPGPRAASDGWRAQ 567

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              S  + V   +  G  ++  V  LP       G +L   +         ++     D 
Sbjct: 568 LASSVRSQVAVVTQDGIAHRIDVVDLPALPRFDTGLSLAAAMPSELLLHTDSVPVGLLDP 627

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +   V   T  G V+R +        R     + L+  D ++  + C+ + D++  +
Sbjct: 628 DGTD--VVAMGTARGTVKRLRPDVLA---REEWEVIALEDGDRLVGFDRCSDDADLVFIS 682

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
              Q +R P + +R   GR + G+ G+ L  G + +   +V   +A  D  +  +     
Sbjct: 683 SDAQLLRTPAAKVRP-QGRTAGGMAGMKLNAGAEALGFWVV---EAPIDAVVVTVAAALG 738

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                   T ++T L+   +        RCQ     E  +   
Sbjct: 739 ALPGTGQTTVKVTPLECYPAKGRGGQGVRCQRFLRGEDRLDVA 781



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 24/214 (11%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--- 746
              +  +++ +  G   R           R +       LA    V S   V+  D    
Sbjct: 529 IPDDPCVVVLSSSGALARVEGGDPLEPGPRAASDGWRAQLAS--SVRSQVAVVTQDGIAH 586

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             D  +     +  +      +  +E +  L  DS   G +  +    + +        +
Sbjct: 587 RIDVVDLPALPRFDTGLSLAAAMPSELL--LHTDSVPVGLLDPDGTDVVAMG-------T 637

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G  KR                   +V  + +   LV     +D+  ++ +S    L+R
Sbjct: 638 ARGTVKRLRPDVLAREE--------WEVIALEDGDRLVGFDRCSDDADLVFISSDAQLLR 689

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            P  ++R   R   G+           +    + 
Sbjct: 690 TPAAKVRPQGRTAGGMAGMKLNAGAEALGFWVVE 723


>gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
 gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
          Length = 959

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 305/930 (32%), Positives = 473/930 (50%), Gaps = 89/930 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  VSI + M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G   +    +K Y 
Sbjct: 10  DNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDKPYY 69

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R  LI+G GN+GS DGD  AA RYTE
Sbjct: 70  KSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQDGDNAAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  L+ D+ K  VD   NY  S +EP VL A+YPN+LVNG  GIAVG+ATNIP 
Sbjct: 130 ARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAFGIAVGLATNIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +A ID  DID   LME I+GPD PTG +I+G+  + +AY TG G + +R 
Sbjct: 190 HNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGGIIIGKKSLLSAYETGEGRVTLRA 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308
            + IE+    R  IV+TE PY+ +KA +L+ I+E+  +K+    +  I+D+RDESDR G 
Sbjct: 250 KTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESISDIRDESDRTGV 309

Query: 309 RVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           R VIE K+ +     D +L  L++ T +Q   S NMVAL   KP+   L  IL  ++  +
Sbjct: 310 RAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAKGKPQTMGLKTILYHYIEHQ 369

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRT+  +  A  R H++ G   A+  +DE++++IR S + + A + L++      
Sbjct: 370 KDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDAGKNLIE------ 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +EVQ+ AILEL L RLTGL       E   L  EIK
Sbjct: 424 --------------------GFGFTEVQSEAILELMLYRLTGLEIVAFEKEHKELEKEIK 463

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVS 543
               ILSS   LL IIK+EL  ++++    R+T IVE   +  +  E+ IV ED+V+T+S
Sbjct: 464 RLNKILSSEKELLKIIKKELTEIREKYGDNRKTTIVENDDEAKINLEELIVEEDIVITMS 523

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + G++KR+PL  Y    R       +  R+ DF   L   +T ++++FF+  G +Y+ K 
Sbjct: 524 NEGFIKRIPLKTY---NRINAEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKG 580

Query: 604 WRLPIGSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
             +P    + +G+ + +I+       E I  +    +   S N   ++F T  G V++  
Sbjct: 581 INIPEFKWKDKGERIESIIKTLDVSQESIVAVYSANDFMESQN---LIFFTDRGIVKKTG 637

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAG 718
           + D    N +  +A+KL + + ++ V    ++     I + T+ G         I   + 
Sbjct: 638 I-DKFNTNYTKIMALKLKNEERVIKVIIAPKDRKETFINIETEKGLKFVVEEPKIEE-SD 695

Query: 719 RNSVGVRGISLAKGDQVISMA----IVLHADADYDERICYMKHMSAQRR-----LISGDT 769
           RN +G++ ++L+  D++IS+      V         R   +K     R       +S D+
Sbjct: 696 RNIMGLQLVNLSPKDRIISIDFTAEFVFKTFTLSINRFGIIKTSDRNRMSSKPLSVSTDS 755

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQF--------------------------ILTV 803
           +    + +      +      Q +  +                             I   
Sbjct: 756 KSKILIFSKDGNVFSTPAFMLQNVGEQGISIKDIWDDIDKDNIVNIISVKDFDDGNIYFF 815

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVNDNDQIILVSDKGTL 862
           ++KG  K+TS  +F      G           ++   L+ V    N  ++II+V+ +   
Sbjct: 816 TKKGMVKKTSLKEFE-----GDYFSTIAYKFKSDKDILINVQLSKNTEEEIIMVTKRAMC 870

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           IR   + I    +   GV   S  +D+ V+
Sbjct: 871 IRFQSDTINPMGKVASGVTGISLKEDDEVI 900


>gi|296454306|ref|YP_003661449.1| DNA gyrase/topoisomerase IV subunit A [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183737|gb|ADH00619.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 909

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 285/966 (29%), Positives = 455/966 (47%), Gaps = 149/966 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSVQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ +PD  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYA GRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYANGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 TRLMA--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGERSALTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNVRSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 634 LPALPASATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKASAKDESEDGG 693

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 751

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LA+G +V +  +V      +        + 
Sbjct: 752 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYE 803

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 804 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 844

Query: 819 ISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
              R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R 
Sbjct: 845 TKGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RD 895

Query: 877 TKGVVI 882
             GV +
Sbjct: 896 GSGVDL 901


>gi|306822526|ref|ZP_07455904.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801406|ref|ZP_07695533.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554071|gb|EFM41980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221921|gb|EFO78206.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 897

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 287/937 (30%), Positives = 445/937 (47%), Gaps = 139/937 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +  D+ +DTVDF PNYD   QEP VL +  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMARAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR+GI+ AY +GRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIVGRSGIREAYESGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR    R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +LK +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPHTMGLKEMLKVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+  L+             
Sbjct: 377 RSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIA------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 425 --------------VFDLDDIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           +S   L G++  E+        TPRRT +++   D                         
Sbjct: 471 ASDEALDGVVIDEMDEAVAAYGTPRRTVLLDEDADGGLVPVTAHGDDGVSATALAAARTA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QR 560
                                          I  E   V +S  G + R         + 
Sbjct: 531 ATVSSAAADVAAAAKAAKKAGEDNATATALQIDDEPCAVMLSATGLIARTHEDAVERWEN 590

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-----ARG 615
           R G          +D +  +F  +T +S    +S G +    V  LP  +P      + G
Sbjct: 591 RSGSDVRTK----DDQIVSIFRTTTRSSYGLITSAGRLVLAHVVELPSVAPDGPLNVSGG 646

Query: 616 KALINILSLNQ------GERITTIMPFPEDESSWNN------LYVVFATKHGNVRRNKLS 663
                +L + +      GER+   +  P  + +  +        +   T++G V+R    
Sbjct: 647 VKAEELLGMTENTDPIRGERVIAAIAMPSTDDAGKDGDGAEPAPLALGTRNGVVKRWNRE 706

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               ++    I   L   DE+L+       + ++  +     + F    +R   GR + G
Sbjct: 707 SPTTMDSWSVID--LKDGDEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRP-QGRTAGG 763

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           + GI LA G  V + A+V                             E  +   D    G
Sbjct: 764 MAGIRLATGCSVAAFAVVPA---------------------------EKVAWTYDEGENG 796

Query: 784 NISEERCQELKLK-EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GA 840
             S      L +  +   L  +E G  K T    +    R   G+R+    K       A
Sbjct: 797 LFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNTLIFA 856

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
            V  +P      I   ++ G+ + +P  ++R     T
Sbjct: 857 FVGAYP------IHASTEGGSGVELPKPDMRRDGSGT 887


>gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619]
 gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619]
          Length = 752

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/795 (31%), Positives = 400/795 (50%), Gaps = 74/795 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ QEP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   L+ L E I+GPD+PT A +I  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KIYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       AD ++  L+  T L+S + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDGRPQLKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR ++ L K   R H+L GL  A  NLDEV+ IIR   +P+ A  
Sbjct: 352 ALLLEWLQYRIGTVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            L+E+Q   ILE RL +L  L    IR 
Sbjct: 410 -LIAR--------------------------FDLTEIQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  + L +L S ++L  +++ EL+   +     RR+ IV       + + + +
Sbjct: 443 EQDELLKEQAKLLALLGSDAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +   
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSVAAHTLP--SARGQGEPLTGRLTPPPGATFECVL-LPDD-----DALYVVASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  +++S       +++ +   T  G+ + F ++
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQDWLAAVTTEGRLLVFKVA 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +GV G  +A  ++ ++   V+   A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGVPGDRVASREEYVTDLAVIPEGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEG 783
            +++   K +    G
Sbjct: 719 PDDLEHYKGERGRRG 733



 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
            C  L   +   +  S+ G+G      D +  N++GKG+ +           +++  PV 
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLP-----NGAKVISPRPVA 644

Query: 848 -NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ERVVSVERIRE 899
             + D +  V+ +G L+   V ++    +  KG  I     D      E V  +  I E
Sbjct: 645 NREQDWLAAVTTEGRLLVFKVADLPQLGKG-KGNKIIGVPGDRVASREEYVTDLAVIPE 702


>gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
 gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
          Length = 757

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/749 (34%), Positives = 389/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    VA+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + VNM  +    +P    L+ I+  ++AF
Sbjct: 298 PTRLVIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPSVKGLVEIITEWLAF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+     LMQR    
Sbjct: 358 RRDTVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADSLAYGDERRSPLTERAEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         T+  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDTFRAAARGKTNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVIMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK+ + L    + L       ++D+LL  TK G+ + FP++ +   +    
Sbjct: 613 NDLVARNRAGKVMITLPENAKALPPMEIHGDDDMLLSITKAGRMLMFPVADLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+ V+S   VL     
Sbjct: 673 NKIVSIPSAQAASGEDVLSWLFVLPPQTS 701



 Score = 44.5 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +        +      D+D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPENAKALPPMEIH----GDDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV ++   S+           K  ++VS+   + +   D
Sbjct: 647 LLSITKAGRMLMFPVADLPQLSK----------GKGNKIVSIPSAQAASGED 688


>gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 749

 Score =  526 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 254/797 (31%), Positives = 391/797 (49%), Gaps = 70/797 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    KY K AR
Sbjct: 11  ETRPLREFTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKSAR 70

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE RL
Sbjct: 71  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTEARL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL +LG+ TVD+ PN+DG+ +EP +L AR PNVL+NGG GIAVGMAT+IP HNL
Sbjct: 131 APYAKLLLQELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EVV  CV ++D P+ D  ALM  +  PDFPT A +I  +  I+  Y TG G++ +R   
Sbjct: 191 REVVSACVHLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMRARY 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E        I+VT +PYQV+ + +LE+IA  ++ K++  + DLRDESD +    ++  
Sbjct: 251 ERENGD-----IIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRLVIT 305

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
            R    D+  ++  L+  T L+  + VN+  +    +P    L  +L  ++ FR + V R
Sbjct: 306 PRSNRVDIHRVMEHLFATTDLEKNYRVNLNVIALDGRPRVLGLRELLLEWLTFRTDTVRR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K +DR H+L GL IA  N+DEV+ IIR    P+     LM R           
Sbjct: 366 RLNWRLQKVQDRLHILEGLLIAYLNIDEVIAIIREEDEPKPV---LMAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILEL+L  L  L    IR E   L  E  E   IL
Sbjct: 412 ---------------FGLSERQAEAILELKLRHLAKLEEMKIRGEQGDLERERDELQTIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RL  +IK+EL +  ++    RR+ +V       +++ D +  E + V +S  G+V 
Sbjct: 457 GSDERLRELIKEELRADAEQYGDERRSPLVTRSAARALDETDLMPSEPVTVVLSEKGWV- 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +       G+  +  D   D     ++   +F    G  Y      LP  
Sbjct: 516 -------RAAKGHEVDAPGLNYKAGDQYRDHAPGRSNQQAVFLDHTGRSYSLTAHTLP-- 566

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   LS   G R   ++              V AT  G      LSD    N
Sbjct: 567 SARGQGEPLTGRLSPAPGARFEHVLC------GDPASLWVLATDAGYGFVCALSDMYAKN 620

Query: 670 RSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAG---RNSVGV 724
           RSGK  + +     +L+    T +   ++   +  G+ + FP+S +   A       +G+
Sbjct: 621 RSGKALLTVPQGARVLAPTPATADEGAELAAVSSGGRLLVFPLSELPRLAKGKGNKIIGI 680

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
              ++   +++++   V+               ++  RR ++   +++ + +      G 
Sbjct: 681 PAAAVKAREELLTGLAVIAPGQGL--------SLTVGRRGMTLKPDDLAAYRAPRGRRGA 732

Query: 785 ISEERCQELKLKEQFIL 801
           +     + +   E   L
Sbjct: 733 LLPRGLRRVDAIEPVDL 749


>gi|148241104|ref|YP_001226261.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
 gi|147849414|emb|CAK26908.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 820

 Score =  526 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/743 (35%), Positives = 411/743 (55%), Gaps = 51/743 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I S+S+  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   DERIVSISLHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +  R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFGCRNPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H   L+++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPVSHQALLEEIGSDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  VA+I NP++  + L++++ GPDFPTG V+L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDALVALIRNPNLSDEKLLQLVPGPDFPTGGVVLTGSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  +V+TE+PYQ++KA  +EK+AE V + ++  IAD+RDESDR 
Sbjct: 243 GVAHIEEVQPGKGRHKRNAVVITELPYQLSKAGWIEKLAEQVNDGKVAGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A+ + +L QL++ T+LQ+ F   ++AL   +P + +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDANPEQVLAQLHKRTALQNNFGAILLALVNGQPIQLSLRQMLQQFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT+Y L +  +R  V+ GL  A+ +L +V+++I+ + +  +A+  L         
Sbjct: 363 LTMMRRTRYALRRCEERLEVVEGLIKALDDLAKVIQMIQDARDAASAKASLQVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + +SE Q  A+L + L RLTGL ++ +R EL  L  E   
Sbjct: 417 --------------------LDISERQADAVLSMPLRRLTGLEQESLRQELEELRQEQSR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L  R  LL  +  EL  ++    TPRRT + EG  ++  +    +      +    
Sbjct: 457 LRHLLDDRKSLLDTLVSELKHLRKRYATPRRTALQEGGDELVAQRTAAQRPNTEMLRKQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDEDF---VTDLFIVSTHTSVLFFS 593
                       Q  G          G+      +   D       L  V     +L F+
Sbjct: 517 LANVSSDQQLLWQSDGILRLVTPQVLGRLHLLDDLDFGDHGCSAKLLLPVQPEPQLLAFT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V   + W      P    + L + +   Q E++  ++  P    +  +  V   + 
Sbjct: 577 SGGRVAALR-WEFAAQQPGPLERFLPDSVD-GQAEQVVDVLVVP---PADQDFSVGLLSS 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
            G  +R    D  +++      +KL    ++  V  C   +D+ + +  G+ +R P+   
Sbjct: 632 DGRFKRLAGQDLRELSGRATTVLKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPVDDS 691

Query: 713 IRVFAGRNSVGVRGISLAKGDQV 735
                GR + G   + L  G+ +
Sbjct: 692 TIPVMGRTAQGPVLMRLLPGESI 714



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                    G  E       D   E  + +        ++  +  +S  G  KR +  D 
Sbjct: 585 RWEFAAQQPGPLERFLPDSVDGQAE-QVVDVLVVPPADQDFSVGLLSSDGRFKRLAGQDL 643

Query: 818 R-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIAS 874
           R +S R      AT V K+ +   L  V      D + + S  G ++R+PV++  I +  
Sbjct: 644 RELSGR------ATTVLKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPVDDSTIPVMG 697

Query: 875 RATKGVVIFSTAKDERV 891
           R  +G V+      E +
Sbjct: 698 RTAQGPVLMRLLPGESI 714



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 18/211 (8%)

Query: 678 LDSRDEILSVET---CTQENDILLTTKLGQC--VRFPISAIRVFAGRN--SVGVRGISLA 730
           LD  D   S +       E  +L  T  G+   +R+  +A +           V G    
Sbjct: 551 LDFGDHGCSAKLLLPVQPEPQLLAFTSGGRVAALRWEFAAQQPGPLERFLPDSVDG---- 606

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + +QV+ + +V  AD D+   +  +      +RL   D  E++          +  + + 
Sbjct: 607 QAEQVVDVLVVPPADQDF--SVGLLSSDGRFKRLAGQDLRELSGRATTVLKLKDGVQLQR 664

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +      +   S  G   R    D    +  R+ +G     +     I    AV    
Sbjct: 665 VVMCRPGDDLAVASSTGRMLRLPVDDSTIPVMGRTAQGPVLMRLLPGESIVGAAAVAAGG 724

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           D    +L+S  G L R+ ++ +R   R   G
Sbjct: 725 DV---LLISQLGQLKRLGIDHLRRCQRGAIG 752


>gi|291550230|emb|CBL26492.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus torques L2-14]
          Length = 746

 Score =  526 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 265/764 (34%), Positives = 415/764 (54%), Gaps = 30/764 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 2   SNESQIIRTEYSDLMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+ MGKYHPHG+++IYD+L  MAQD+    +L++G GNFGS++GD  AA RY
Sbjct: 62  YRKSARIVGDTMGKYHPHGDSSIYDSLVVMAQDFKKGQVLVDGHGNFGSIEGDGAAAMRY 121

Query: 131 TECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL K      L DL K+ +DF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+
Sbjct: 122 TEARLTKFTQEVCLADLDKNVIDFGPNFDETEKEPLVLPMRVPNLLINGAEGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EVVD   A + N  I    LM+ I+GPDFPTG +++ +  +   Y +G+G I 
Sbjct: 182 IPTHNLCEVVDAVKAYMKNDKITTKQLMKYIKGPDFPTGGIVVNKDDLPAIYESGQGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +RG   +E+  G ++Q+V+TEIPY +        L  +  LV  K+  DI D+ ++S ++
Sbjct: 242 LRGKVEVEELKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVESKKTTDIVDISNQSSKE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F+ 
Sbjct: 302 GIRIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLSLKQIIEHHVDFQF 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+   LL K R+++ V  GL  A   +D ++ I+R S + + AR  L+        
Sbjct: 362 ELATRKYTTLLGKEREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVNGETENIK 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  I        +      +  +E Q  AILE+RL RL GL  + ++ E       I  
Sbjct: 422 FKSAI--------SKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEKTLENIAR 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++   + G+I +EL S K E    RRT +      + +E  I  + +V  +   G
Sbjct: 474 YEDILNNYDSMAGVIMEELDSYKKEFGRKRRTVVENAEEAVFEEKKIEEQQVVFLMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V   VY   +           ++  ++           +  F+  G +++ KV  L
Sbjct: 534 YAKTVDTGVYERNKEAAD-------KENKYIVH---CMNIGKLCLFTDEGKMHQVKVLDL 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N+ + +  E    ++    +E       ++FAT  G ++R   S+F 
Sbjct: 584 PHGKFRDKGIPIDNVSNYSSSEEQIVMIC---EEEQMRYSKLLFATAQGMIKRVDGSEF- 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           Q+++    A KL   D +++V+  T+  +++L TK G  +RF  + +     + +VGVRG
Sbjct: 640 QVSKRTIAATKLQEEDRLVAVKVVTEYQNVVLQTKNGYFLRFLSADVPEK-KKAAVGVRG 698

Query: 727 ISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISG 767
           I L K D++  + +          Y E+   +  +   +R  +G
Sbjct: 699 IKLQKKDELEEVYLFEEGTETKITYGEKTVSLNRLKLAKRDGTG 742



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C+E +++   +L  + +G  KR    +F++S R          +K+ E   LVAV  V +
Sbjct: 612 CEEEQMRYSKLLFATAQGMIKRVDGSEFQVSKR------TIAATKLQEEDRLVAVKVVTE 665

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              ++L +  G  +R    ++    +A  GV      K + +  V    E
Sbjct: 666 YQNVVLQTKNGYFLRFLSADVPEKKKAAVGVRGIKLQKKDELEEVYLFEE 715


>gi|171742649|ref|ZP_02918456.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283456272|ref|YP_003360836.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|171278263|gb|EDT45924.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283102906|gb|ADB10012.1| gyrA2 DNA gyrase subunit A [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  526 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 288/936 (30%), Positives = 443/936 (47%), Gaps = 137/936 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  ++ Y+
Sbjct: 18  KEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +  D+ +DTVDF PNYD   QEP VL +  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARMAQAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR+GI+ AY +GRG++  R 
Sbjct: 197 HNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIVGRSGIREAYESGRGALTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +DR    R+V
Sbjct: 257 VTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +LK +V  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPHTMGLKEMLKVWVDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+  L+             
Sbjct: 377 RSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIA------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++  E + L   I+E   IL
Sbjct: 425 --------------VFDLDDIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           +S   L G++  E+        TPRRT +++   D                         
Sbjct: 471 ASDEALDGVVIDEMDEAVAAYGTPRRTVLLDEDADGGLVPVTAHGDDGVSATALAAARTA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          I  E   V +S  G + R       A  R
Sbjct: 531 ATVSSAAADVAAAAKAAKKAGEDNATATALQIDDEPCAVMLSATGLIARTHED---AVER 587

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-----ARGK 616
                       +D +  +F  +T +S    +S G +    V  LP  +P      + G 
Sbjct: 588 WENRSGSDARTKDDQIVSIFRTTTRSSYGLITSAGRLVLAHVVELPAVAPDGPLNVSGGV 647

Query: 617 ALINILSLNQ------GERITTIMPFP------EDESSWNNLYVVFATKHGNVRRNKLSD 664
               +L + +      GER+   +  P      +D        +   T++G V+R     
Sbjct: 648 KAEELLGMTENTDPIRGERVIAAIAMPSVDDAGKDGDGAEPAPLALGTRNGVVKRWNRES 707

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              ++    I   L   DE+L+       + ++  +     + F    +R   GR + G+
Sbjct: 708 PTTMDSWSVID--LKDGDEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGM 764

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            GI LA G  V + A+V                             E  +   D    G 
Sbjct: 765 AGIRLATGCSVAAFAVVPT---------------------------EKVAWTYDEGENGL 797

Query: 785 ISEERCQELKLK-EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GAL 841
            S      L +  +   L  +E G  K T    +    R   G+R+    K       A 
Sbjct: 798 FSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNTLIFAF 857

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           V  +P      I   ++ G+ + +P  ++R     T
Sbjct: 858 VGAYP------IHASTEGGSGVELPKPDMRRDGSGT 887


>gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440]
 gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440]
          Length = 752

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/812 (30%), Positives = 404/812 (49%), Gaps = 74/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT A I+  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        D ++  L+  T L+S + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A  
Sbjct: 352 TLLVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++R                            L+E+Q   ILE RL +L  L    IR 
Sbjct: 410 -LIER--------------------------FELTEIQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  +   +L S ++L  +++ EL+   +     RR+ IV       + + + +
Sbjct: 443 EQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +   
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLAAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDD-----DALYVVASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +GV G  +A  ++ ++   V+   A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            +++   K +    G+      Q +   +  +
Sbjct: 719 ADDLEHYKGERGRRGSKLPRGFQRVDGLQVEV 750



 Score = 44.5 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GKG+ +            VA     
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVA---DR 646

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + D +  V+ +G L+   V+++    +  KG  I      +RV S    RE  + D A  
Sbjct: 647 EQDWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGV-PGDRVAS----REEFVTDLAVI 700

Query: 909 TE 910
            E
Sbjct: 701 PE 702


>gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans]
 gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 256/767 (33%), Positives = 383/767 (49%), Gaps = 71/767 (9%)

Query: 1   MTEHIISSDEE-EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+     D      G  S+++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MTDQANLFDTAAPADGGESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+GQGNFGS
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  L++++   TVDF+PNYDGS +EP +L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT IP+HNL EV    VA+I NP +  + L+ I+ GPDFP G  I+   T I 
Sbjct: 181 SGIAVGMATEIPSHNLREVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------- 291
           + Y +GRGS+ +R    IE  +  + Q VVTE+P+  +   +LE+I EL   K       
Sbjct: 241 DIYRSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKS 300

Query: 292 -----------RIVDIADLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                       +  +  +RDES R     ++   +  + D     N L  +TSL++  S
Sbjct: 301 LSPEQLALKQTVLAMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVS 360

Query: 339 VNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V + G  KP +  L  IL+ +V FR   + RR+++ L K  DR H+L G    + N+
Sbjct: 361 INLVMIGGDGKPRQKALGDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V++IIR S  P+ A                                   LSE Q   I
Sbjct: 421 DKVIKIIRESDEPKPA-----------------------------LMDAFRLSERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+ + + +    RR
Sbjct: 452 LEIRLRQLARLETIKIQQELAELRSEKSTLQDLLDNPSSMKRLVIKEIEADEKQFGDKRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I      + +   ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 TLIEVAEKAVVE-TRVIDEPVTVVISQKGWV--------RARTGHGHDAAQFTFKASDAL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            D F   T  ++L F S G +Y   V  LP    +  G  +  ++ L  G R+      P
Sbjct: 563 YDTFECRTVDTLLVFGSNGRIYSVAVAALPGA--RGDGVPITTLVELASGTRVLHYFAGP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDI 696
            D      + ++ A+  G     K  D +   RSGK  + LD  DE L+        + I
Sbjct: 621 AD------VTLLLASTAGYGFTAKSGDMVSRTRSGKAFITLDEGDEPLTPRPIFAGASAI 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
              ++ G+ + F I  I+        GV  + L K +++++   +  
Sbjct: 675 ACLSEKGRVLVFGIDEIKSLTA-GGRGVILMDLEKNEKLLAAQPISQ 720



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  +L  S  G+G    S D     RSGK     D          +          I  
Sbjct: 621 ADVTLLLASTAGYGFTAKSGDMVSRTRSGKAFITLDEGDEPLTPRPIFAGASA----IAC 676

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S+KG ++   ++EI+  +   +GV++    K+E++++ + I +  +V
Sbjct: 677 LSEKGRVLVFGIDEIKSLTAGGRGVILMDLEKNEKLLAAQPISQRGVV 724


>gi|167758062|ref|ZP_02430189.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
 gi|167663959|gb|EDS08089.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
          Length = 745

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 255/728 (35%), Positives = 400/728 (54%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   QDSQIIRTEYSDVMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K        DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLAKITQDAYLADLDKDIVDFMPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV++   A + N DI    LM+ I+GPDFPTG +++ +  + N Y  G G I I
Sbjct: 182 PTHNLGEVIEAVKAYMKNDDISTKQLMKYIKGPDFPTGGIVVNKDELLNIYEAGSGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G + ++V+TEIPY +        L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEEMKGGKNRLVITEIPYTMIGAGIGKFLNDVCALVESKKTSDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIELKRGADVENLTNMLYKKTRLEDTFGVNMLAVANGRPETMGLKKIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ + LL K +DR  +  GL  A   +D ++ I+R S + + A+  L          
Sbjct: 362 LATRKYQNLLKKEQDRKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I        +      +  +E Q  AILE+RL +L GL  + +  E       I   
Sbjct: 422 KSSI--------SKKMAAMLRFTERQATAILEMRLYKLIGLELEALMKEHEETLKNIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  +L  +K E    RRT +      + +E+ I  +++V  +   GY
Sbjct: 474 EDILNNYDSMAEVIMADLDKIKKEFARKRRTAVENAEEAVYEENKIEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  ++Y   +      +            +        +  F++ G +++ KV  LP
Sbjct: 534 AKTVDTNIYERNKEAADAEN----------KHVLSCMNTGKLCIFTNTGKMHQVKVLDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  +     +    D        ++FATK G +++ + ++F Q
Sbjct: 584 YGKFRDKGLPIDNVSNYDSTQENIVYIC---DAEQMRYARLLFATKQGMIKKVEGNEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   DE++SV+  T    ++L TK G  +RFP   +     + ++GVRGI
Sbjct: 640 VAKRTIAATKLQPEDELISVQVVTDNQQVVLQTKEGYFLRFPAQEVSGK-KKGAIGVRGI 698

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 699 KLRKNDEL 706



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  +++G  K+    +F+++ R          +K+     L++V  V D
Sbjct: 611 CDAEQMRYARLLFATKQGMIKKVEGNEFQVAKR------TIAATKLQPEDELISVQVVTD 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N Q++L + +G  +R P  E+    +   GV      K++ +
Sbjct: 665 NQQVVLQTKEGYFLRFPAQEVSGKKKGAIGVRGIKLRKNDEL 706


>gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1]
          Length = 752

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/812 (30%), Positives = 404/812 (49%), Gaps = 74/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT A I+  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        D ++  L+  T L+S + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A  
Sbjct: 352 TILVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++R                            L+E+Q   ILE RL +L  L    IR 
Sbjct: 410 -LIER--------------------------FELTEIQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  +   +L S ++L  +++ EL+   +     RR+ IV       + + + +
Sbjct: 443 EQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +   
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLAAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDD-----DALYVVASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +GV G  +A  ++ ++   V+   A           + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGATL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            +++   K +    G+      Q +   +  +
Sbjct: 719 ADDLEHYKGERGRRGSKLPRGFQRVDGLQVEV 750



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GKG+ +            VA     
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVA---DR 646

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + D +  V+ +G L+   V+++    +  KG  I      +RV S    RE  + D A  
Sbjct: 647 EQDWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGV-PGDRVAS----REEFVTDLAVI 700

Query: 909 TE 910
            E
Sbjct: 701 PE 702


>gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
 gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
          Length = 757

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 377/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVIALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M D D +  E + + +
Sbjct: 449 DQLQALLASERKLNTMIKKEIQADAAAYGDDRRSPLTERAEAKAMSDHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +       G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPGGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAG--- 718
           +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADAD 747
              V + G   A G+  ++   VL     
Sbjct: 673 NKIVSIPGAQAAAGEDRLAWLFVLPPQTS 701



 Score = 41.4 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +        +       +D 
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIH----GPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568]
 gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568]
          Length = 757

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/749 (33%), Positives = 387/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    VA+ID P   L+ L+E ++GPD+PT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWSKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +    +P+   L+ IL  ++AF
Sbjct: 298 PTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLAF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LMQR    
Sbjct: 358 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +S+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGISDTQAEAILELKLRHLAKLEEFKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ I E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAQAYGDDRRSPITERAEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         T+  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRSAARGKTNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK+ + L    + L+      E+D+LL  T  G+ + FP++ +   +    
Sbjct: 613 NDLVARNRAGKVMITLPDNAKALAPMEIHGEDDMLLSITAAGRMLFFPVADLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPSAQAASGEDKLAWLFVLPPQTS 701



 Score = 44.9 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +        +   AL  +    ++D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITL----PDNAKALAPMEIHGEDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV ++   S+           K  ++VS+   + +   D
Sbjct: 647 LLSITAAGRMLFFPVADLPQLSK----------GKGNKIVSIPSAQAASGED 688


>gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 795

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 290/892 (32%), Positives = 449/892 (50%), Gaps = 112/892 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRILF M ++G+  NK Y K
Sbjct: 2   EDIKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE +GK+HPHG+ ++YDAL RMAQD+++R  LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 62  SARVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           N  EV +    +   PD  ++ L + I+GPDFPTG +I      I + Y T RGSI I+G
Sbjct: 182 NFTEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G+R+++V+ EIPYQVNK  ++++IAELVR  +   I+DLRDESDR G R+VI
Sbjct: 242 KARIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A  + +L +LY+ T L+  F VN   L   +P+  +L  IL+ F+  R EV+ RR
Sbjct: 302 ELKRDADPEKVLKKLYKSTPLEKSFPVNFTVLVDKQPKVLSLKEILQEFIKHRLEVITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R H++ GL +A+ N D+V+ I+R S +   AR  L  R            
Sbjct: 362 TLFDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQARELLTTR------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q  AIL++RLAR T L    ++ E   L  +I+    ILS
Sbjct: 410 --------------YNLTETQANAILDMRLARFTALETTKLKEEKKELEAQIENYKKILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG--YVKR 550
           +    + +  QE+  +  +    R+T I        +++   +E  +  +   G  Y  +
Sbjct: 456 TEEEKIKVFIQEMDEMLSKYSDERKTTIA------VEKELTFKEYFMFAIMSSGKVYNHK 509

Query: 551 VPLSVYRAQ-RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           V  +  +++  +       +   +   +  +  V +   V FF+  G      V  LP G
Sbjct: 510 VDENTDKSEILQKIINDISLNSVEGKKIVSIQEVESSKPVAFFTKEGKADWSLVIDLPKG 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +               I + +     +       V   TK G ++R    D    +
Sbjct: 570 EGKLK---------------IDSEIVGTIYQGEGEENRVFLITKKGIIKRMFDEDIFYKS 614

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                 M L+  DE+         + I + TK    + F  + +RV  G  + GV GI L
Sbjct: 615 HK-HTVMPLNEGDELAVAIADQNPSYIGIYTKNADLLLFERNEVRV-TGDKAKGVEGIDL 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V    ++                                                
Sbjct: 673 DPNDEVAGSFLI------------------------------------------------ 684

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    +IL  + KG+ K     +F I  R  KG+ A  +   N+   +V++ PV+ 
Sbjct: 685 -----DGHNYILIATSKGYMKLVEKSEFPIKKRGQKGLMAVKL---NKDDYVVSMIPVDI 736

Query: 850 NDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + +++ +  G L+++ V+   I I  R + G   F+  + + +V V ++ +
Sbjct: 737 GEDVLVQTKHGKLLKIKVDPSIIPIGKRTSTGENKFNF-EADSIVKVLKLPK 787



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 103/290 (35%), Gaps = 27/290 (9%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK------- 673
           +LS    ER TTI    E E ++   ++      G V  +K+ +    ++S         
Sbjct: 471 MLSKYSDERKTTIAV--EKELTFKEYFMFAIMSSGKVYNHKVDE--NTDKSEILQKIIND 526

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I++      +I+S++       +   TK G+     +  +         G     L    
Sbjct: 527 ISLNSVEGKKIVSIQEVESSKPVAFFTKEGKADWSLVIDLP-----KGEG----KLKIDS 577

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +++          + +E   ++       + +  +     S K+         E      
Sbjct: 578 EIVGTIY----QGEGEENRVFLITKKGIIKRMFDEDIFYKSHKHTVMPLNEGDELAVAIA 633

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                +I   ++          + R++    KG+   D+   +E   +   F ++ ++ I
Sbjct: 634 DQNPSYIGIYTKNADLLLFERNEVRVTGDKAKGVEGIDLDPNDE---VAGSFLIDGHNYI 690

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++ + KG +  V  +E  I  R  KG++     KD+ VVS+  +   E V
Sbjct: 691 LIATSKGYMKLVEKSEFPIKKRGQKGLMAVKLNKDDYVVSMIPVDIGEDV 740


>gi|300173092|ref|YP_003772258.1| DNA topoisomerase IV subunit A [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887471|emb|CBL91439.1| DNA topoisomerase IV, A subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 812

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 254/834 (30%), Positives = 415/834 (49%), Gaps = 53/834 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTFDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++Q+W +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R  ++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMTDLGQETVDMVLNFDDTTYEPTVLPSRVLSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+      ++D+P+  L ALM  ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINGALTYLLDHPEAPLSALMRYVKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I +  G +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TVISEIKGGKKKIEITELPYEVVKSNLVAKIDGIRLNKEVAGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +  +A  IL  L++ T LQ  ++ NMVA++  +P   +L   L+AF+ FR+EVV++R+
Sbjct: 303 LNKDVNAAGILTYLFKKTDLQIYYNFNMVAIHDQRPVHVSLKQGLEAFLNFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+               
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLID-------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   ++ Q  AI+ L+L RLT      +  E  +L  +I     I++ 
Sbjct: 409 ------------SYQFTQPQAEAIVTLQLYRLTNTDVTQLEEEFATLAAKIVRLNLIINE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I+ E+  +     +PRR+ I   + +  ++    I  ED+ V VS  GY KR 
Sbjct: 457 SSALNDVIRDEIAEITTTYRSPRRSEIEAEVENLIIDSAITIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A        S   + ++D       ++T   +  F++ G +    V  LP    
Sbjct: 517 SLRSYKASD------SDNGLAEDDLAIFEGQLNTTQHLFMFTNKGNIIYRPVHELPDSKW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+     L + +  E +  ++     E           T  G +++  LSD +    
Sbjct: 571 KDTGEHFSQQLSNWHADEFVIKVIAIDNLEQEGA---FTVVTNDGFIKQTILSDMVPKAY 627

Query: 671 SGKIAMKLD---SRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             K +M +        ++ +      ++ D+LL +  G  +RF ++ +     R + GV+
Sbjct: 628 KKKTSMAIKLKTDSSYVVGIAYFKQAKQQDVLLLSHDGVGLRFKVTDVPEIGPRTA-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D +++   + +      +++  +    A + +   +            +    
Sbjct: 687 AMDLRGTDTIMAALFITNDS----QQVAIVASNGAFKYMPISEINRSKRANKGLLIFTQK 742

Query: 786 SEERCQE-----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                        +  E  +  ++ +   +     D+  S R G G    DV K
Sbjct: 743 KTVAYHVAAATIFEAHETALEILTTRWQAQELQLSDYHPSQRIGNGQYVVDVKK 796



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 21/253 (8%)

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRF 708
           ++   +V R+++++     RS + +      + ++  S  T  +E+  +L ++ G   R 
Sbjct: 457 SSALNDVIRDEIAEITTTYRSPRRSEIEAEVENLIIDSAITIAEEDVQVLVSRNGYYKRA 516

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS--------MAIVLHADADYDERICYMKHMSA 760
            + + +     N        LA+ D  I            +     +   R  +    S 
Sbjct: 517 SLRSYKASDSDNG-------LAEDDLAIFEGQLNTTQHLFMFTNKGNIIYRPVHELPDSK 569

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
            +      ++++++   D  V   I+ +  ++    E     V+  GF K+T   D    
Sbjct: 570 WKDTGEHFSQQLSNWHADEFVIKVIAIDNLEQ----EGAFTVVTNDGFIKQTILSDMVPK 625

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
               K   A  +   +     +A F       ++L+S  G  +R  V ++      T GV
Sbjct: 626 AYKKKTSMAIKLKTDSSYVVGIAYFKQAKQQDVLLLSHDGVGLRFKVTDVPEIGPRTAGV 685

Query: 881 VIFSTAKDERVVS 893
                   + +++
Sbjct: 686 KAMDLRGTDTIMA 698



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 105/291 (36%), Gaps = 26/291 (8%)

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I + +   E++        V  +++G  +R  L  +   +        L   D  +    
Sbjct: 492 IDSAITIAEEDVQ------VLVSRNGYYKRASLRSYKASDSD----NGLAEDDLAIFEGQ 541

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV----RGISLAKGDQVISMAIVLHAD 745
                 + + T  G  +  P+  +   +     G     +  +    + VI +  + + +
Sbjct: 542 LNTTQHLFMFTNKGNIIYRPVHEL-PDSKWKDTGEHFSQQLSNWHADEFVIKVIAIDNLE 600

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-----LKLKEQFI 800
              +     + +    ++ I  D       K  S      ++           + K+Q +
Sbjct: 601 --QEGAFTVVTNDGFIKQTILSDMVPKAYKKKTSMAIKLKTDSSYVVGIAYFKQAKQQDV 658

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S  G G R    D         G++A D+   + I  + A+F  ND+ Q+ +V+  G
Sbjct: 659 LLLSHDGVGLRFKVTDVPEIGPRTAGVKAMDLRGTDTI--MAALFITNDSQQVAIVASNG 716

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVDEAEST 909
               +P++EI  + RA KG++IF+  K     V +       E   E  +T
Sbjct: 717 AFKYMPISEINRSKRANKGLLIFTQKKTVAYHVAAATIFEAHETALEILTT 767


>gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 821

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 286/843 (33%), Positives = 416/843 (49%), Gaps = 77/843 (9%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D  E ++ I+ + ++ EM+ S+L YA++VI  RA+PD RDGLKPV RRIL+ 
Sbjct: 1   MAKKDQVVDVPEADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M QMG+  ++ +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LRL L++G GNFGS
Sbjct: 61  MDQMGLRPDRGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE R+  AA  L+  LG+DTVDF PNYD  F +P VL A +P +LVNG 
Sbjct: 121 LD-DGPAAARYTEARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNI  HNL E + G V ++D+PD  +  LM  + GPD P G VI+G  G+K 
Sbjct: 180 SGIAVGMATNIAPHNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGGVIVGLEGVKE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R    +E+ +  +  ++VT++PY V    ++EKI E V   R+  I+ +
Sbjct: 240 AYETGRGAFKTRAKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISSV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           ++ +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P+   L  IL
Sbjct: 300 QNLTDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPQVMGLKQIL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + FV  R +V  RR+++ L K  +R H++ GL IA+ ++D+V+ IIR S + + AR  LM
Sbjct: 360 RVFVDHRLDVTTRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARERLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LS+ Q   ILELRL RLT   R ++  E +
Sbjct: 420 T--------------------------AFDLSQAQADYILELRLRRLTKFSRIELEAERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--------- 529
            L   I E  ++L S   L  ++K+EL  V + L TPRRT ++                 
Sbjct: 454 ELAARIAELREVLESPELLRALVKRELAEVSERLGTPRRTVLLASSGAPVVGGAGASSLA 513

Query: 530 ------------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
                       E  I  +   V +S  G + RV          G            D  
Sbjct: 514 ALPSVPRSGKGLELQIPDDPCQVVLSATGALARV---------EGVDPLEPGPRAAFDGW 564

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS----LNQGERITTI 633
                 S  + V   +  G  ++  V  LP       G +L   +     L+   R   +
Sbjct: 565 RAQLPSSVRSQVAVVTEDGVAHRIDVVDLPALPRFDTGMSLAGAVPASELLHSDSRPVGL 624

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +          +      T  G V+R +      + R     + LD  D ++    C  E
Sbjct: 625 L------DPDGSAVSAMGTARGTVKRLRPD---VLQRDEWEVIALDPGDRLIGFAPCPDE 675

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            D++  +   Q +R P   IR   GR + GV G+ L+ G + I   +V   DA  +  + 
Sbjct: 676 ADVVFISGDAQLLRTPAERIRP-QGRTAGGVAGMRLSPGVEAIGFWVV---DAPAESVVV 731

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +             T ++T      S        R Q     E   L V+  G G R S
Sbjct: 732 TVAAAEGALPGTGQTTVKVTPFDAYPSKGRGGQGVRAQRFLRGEDR-LDVAWVGAGPRAS 790

Query: 814 SYD 816
           + D
Sbjct: 791 TSD 793



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 20/212 (9%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY- 748
              +   ++ +  G   R           R +       L     V S   V+  D    
Sbjct: 529 IPDDPCQVVLSATGALARVEGVDPLEPGPRAAFDGWRAQLPS--SVRSQVAVVTEDGVAH 586

Query: 749 --DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
             D               ++G       L +DS   G +  +      +        + +
Sbjct: 587 RIDVVDLPALPRFDTGMSLAGAVPASELLHSDSRPVGLLDPDGSAVSAMG-------TAR 639

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  KR      +            +V  ++    L+   P  D   ++ +S    L+R P
Sbjct: 640 GTVKRLRPDVLQRDE--------WEVIALDPGDRLIGFAPCPDEADVVFISGDAQLLRTP 691

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              IR   R   GV     +     +    + 
Sbjct: 692 AERIRPQGRTAGGVAGMRLSPGVEAIGFWVVD 723



 Score = 42.2 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 26/219 (11%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDER 751
            + + T+ G   R  +  +      ++    G+SLA     +  + +LH+D+      + 
Sbjct: 575 QVAVVTEDGVAHRIDVVDLPALPRFDT----GMSLAGA---VPASELLHSDSRPVGLLDP 627

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL--KEQFILTVSEKGFG 809
                      R            +++  V      +R         E  ++ +S     
Sbjct: 628 DGSAVSAMGTARGTVKRLRPDVLQRDEWEVIALDPGDRLIGFAPCPDEADVVFISGDAQL 687

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKG------ 860
            RT +   R   R+  G+    +S   E    +  + V+   + ++V+    +G      
Sbjct: 688 LRTPAERIRPQGRTAGGVAGMRLSPGVEA---IGFWVVDAPAESVVVTVAAAEGALPGTG 744

Query: 861 --TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             T+   P +      R  +GV      + E  + V  +
Sbjct: 745 QTTVKVTPFDAYPSKGRGGQGVRAQRFLRGEDRLDVAWV 783


>gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
 gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
          Length = 970

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 304/953 (31%), Positives = 480/953 (50%), Gaps = 86/953 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  ++    ++  I   SI++ M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MSKKNMNI--PKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +D  VA IDN DI    LM  I+GPD PTG +I+G   + +A
Sbjct: 179 GIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIIIGEQALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y  G G + +R  + IEK   DR  I++ E PY+ NK+ +L+ I+E+  +K+    + +I
Sbjct: 239 YEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENI 298

Query: 297 ADLRDESDRQGYRVVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ +V   +L  L++ T LQ   S NMVA+   KPE   
Sbjct: 299 TDIRDESDRNGIRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIADGKPETLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  ++EVV+RR++  L  A+ R H++ G   A+  +DE++  IR S + + +
Sbjct: 359 LKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             S  Q +AI+EL L +LTGL     
Sbjct: 419 EQNLVNK--------------------------FGFSMEQAQAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
             E  +L  +IK    ILSS   L  ++K+EL  VK++   PRRT IV  +    ++ E+
Sbjct: 453 EKEYKNLEKKIKALEKILSSEKELFKVVKKELEEVKEKYGDPRRTEIVHDDEQAKIDIEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+V+T+S+ GY+KRV    YR   R       +  R+ DF T +   +T  +++ 
Sbjct: 513 LILDEDIVITLSNEGYIKRVADKYYR---RINPKVEDIEYREGDFNTYVLNGNTKDNMMI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +Y+ ++  +P    + +G+ L  ++     ++   I+    +     +   +F 
Sbjct: 570 FTNQGNLYQIRISNIPEMKWKEKGERLDTLIKSLDIDK-EKIIDIYINSELLPSKSFMFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQCVRF 708
           T  G ++++ L D  + N S  +A+KL   ++++ ++       E  I + TK G     
Sbjct: 629 TNRGVIKKSSL-DKFKTNYSKLLALKLKDNEKLIDIKLVNTGHVEKYISVDTKNGLSFTV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISM-------------AIVLHADADYDERICYM 755
            I      + RN +G +  +++  D+V S+              I  +       RI Y 
Sbjct: 688 DIP-RIEDSERNIMGTQIFNISNNDEVKSINYTDKFNISNFVVNINKNGSIKISNRINYK 746

Query: 756 KHMSAQRRLIS-------------------GDTEEITSLKNDSSVEGNISEERCQELK-- 794
                    +S                    + +      ND   +   +EE    +   
Sbjct: 747 NFYGCYANSLSRLIIFGNKGNVYCVPAYMIQNIDSKGIKLNDLIDDFKQNEEEIVNIYSI 806

Query: 795 ---LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +   ++ G+ KRTS  +F   N     I+     K  +    V +   +D  
Sbjct: 807 SELSDSTSVYFFTKSGYVKRTSLEEFNGENPC---IKGYKFKKEEDTIINVLLANNDDKK 863

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            +IL++     IR   N I    +   GV   S   ++ V+  E I + E  D
Sbjct: 864 DVILITKNAMGIRFEANNISYMGKIASGVTGISLRDNDEVIFAEFIDKKEEKD 916



 Score = 42.2 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 61/219 (27%), Gaps = 71/219 (32%)

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS--LNQGERITTIMPFPEDE 640
            ++ + ++ F + G VY    + +      ++G  L +++       E I  I    E  
Sbjct: 753 ANSLSRLIIFGNKGNVYCVPAYMIQNI--DSKGIKLNDLIDDFKQNEEEIVNIYSISEL- 809

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQIN------------------------------- 669
              ++  V F TK G V+R  L +F   N                               
Sbjct: 810 --SDSTSVYFFTKSGYVKRTSLEEFNGENPCIKGYKFKKEEDTIINVLLANNDDKKDVIL 867

Query: 670 ---------------------RSGKIAMKLDSRDEILSVETCTQENDILLTTKLG----- 703
                                 SG   + L   DE++  E   ++ +  +    G     
Sbjct: 868 ITKNAMGIRFEANNISYMGKIASGVTGISLRDNDEVIFAEFIDKKEEKDVINIDGEFKNK 927

Query: 704 -------QCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
                  +     I        R   G + I+L   D V
Sbjct: 928 LNIECKDRIEAEIILENIKNQNRAGKGKKLINLELDDYV 966


>gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 782

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 262/743 (35%), Positives = 401/743 (53%), Gaps = 35/743 (4%)

Query: 1   MTEHIISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I   + E       +   +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MNDTIDDPNMEAPDNGGEIAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  LL+ L +D VDFR NYDG+  EPVVL A++PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTIVAEALLEGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E+ D C+ +I  PD   D L+  + GPDFPTG VI+     I
Sbjct: 181 SSGIAVGMATNIPPHNISELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K+I  +A
Sbjct: 241 AQAYRTGRGSFRLRCKFEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      ++    +    +V++  LYR + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESADDIRLILEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R+EV++RR+++ + K   R  VL G  +A  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+  W    ++       ++ Y     G   LSEVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMREDWGIDHVRA----TSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEG--LLDMED 529
            + L +E     D+L+  +     I ++L   K           RRT+  E   + ++  
Sbjct: 474 RDELMLERANLEDLLADPALQWAKIAEQLRETKKTFGKDYEGGARRTQFAEAGQVEEVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G++        RA       +  +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWI--------RAMTGHIDLKRELKFKDGDGPRFIFHAETTDRL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G  Y      LP G  +  G+ L  ++ L    +I  I+             ++
Sbjct: 586 LVFASNGRFYTVSAANLPGG--RGMGEPLRLMVDLPNEAQIIDILI------HKPGRKLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       D +   R+GK  + +   +  +  +     + + + ++ G+ + FP
Sbjct: 638 VASDAGNGFMVPEDDVLAQTRNGKQVLNVKGGETAMICKPV-DGDHVAVVSQNGKFLVFP 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
            + +        V ++  ++A+G
Sbjct: 697 TNELPEMTRGKGVRLQKYNMARG 719



 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + +L  S+ G G      D     R+GK +      +   I   V      D D 
Sbjct: 629 IHKPGRKLLVASDAGNGFMVPEDDVLAQTRNGKQVLNVKGGETAMICKPV------DGDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS  G  +  P NE+   +R  KGV +  
Sbjct: 683 VAVVSQNGKFLVFPTNELPEMTRG-KGVRLQK 713


>gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ]
 gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ]
          Length = 752

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/794 (30%), Positives = 393/794 (49%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + A  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPDFPT A I+  R  +   Y +GRG++ +R
Sbjct: 190 HNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYESGRGTLRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            +  +E        +V+T +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 ALYRVEDGD-----VVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I        + ++  L+  T L++ + VN+  +    +P+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDGRPQVKNLRALLSEWLEFRVRT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL IA  NLDEV+RIIR    P+     L++R        
Sbjct: 365 VRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPKPV---LIER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q   IL+ RL +L  L    IR E  +L  E  + L
Sbjct: 414 ------------------FALSEAQADYILDTRLRQLARLEEMKIRGEQEALAKERDKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +L S +RL  ++++ELL+  +     RR+ IVE      + + + +  E + V +S  G
Sbjct: 456 GLLGSEARLKKLVRKELLADAETYGDARRSPIVERAEARALSETELLPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      + +  +  D         ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDPAALSYKSGDTFKAAAQGRSNQYAVFIDSSGRSYSLAAHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L+   G     ++  P+DE+       V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGRLAPPPGAGFECVL-LPDDEA-----LYVLASDAGYGFVAKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +   +++         + +   T  G+ + F ++ +   A      +
Sbjct: 620 AKNKAGKALLSLPAGARVMAPRPLGDAGSDWLAAVTSEGRLLLFRVAELPQLAKGKGNRI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
             I    +A  ++ +   +VL   A           + A +R +S    ++   + +   
Sbjct: 680 IAIPGARVASREEYLCDFVVLSERATL--------QLQAGKRTLSLKPADLEHYRGERGG 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745


>gi|227547672|ref|ZP_03977721.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227211927|gb|EEI79823.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 945

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 285/966 (29%), Positives = 455/966 (47%), Gaps = 149/966 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 37  MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 96

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 97  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 156

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 157 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 215

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 216 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 275

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 276 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 335

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 336 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 395

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 396 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 455

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 456 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 489

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 490 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 549

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 550 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 609

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 610 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 669

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 670 LPALPATATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 729

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 730 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 787

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LA+G +V +  +V      +        + 
Sbjct: 788 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYE 839

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 840 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 880

Query: 819 ISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
              R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R 
Sbjct: 881 TKGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RD 931

Query: 877 TKGVVI 882
             GV +
Sbjct: 932 GSGVDL 937


>gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
 gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
          Length = 757

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 250/749 (33%), Positives = 385/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    VA+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAIWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +    +P+   L+ IL  ++AF
Sbjct: 298 PTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLAF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LMQR    
Sbjct: 358 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +S+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGISDTQAEAILELKLRHLAKLEEFKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                +L+S  +L  +IK+E+ +        RR+ I E      M + D +  E + + +
Sbjct: 449 DHLQALLASERKLNTLIKKEIQADAQAYGDDRRSPITERAEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         T+  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSYRSAARGKTNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L+      ++D+LL  T  G+ + FP++ +   +    
Sbjct: 613 NDLVARNRAGKAMITLPDNAKALAPMEIHGDDDMLLSITAAGRMLLFPVADLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPAAQAASGEDKLTWLFVLPPQTS 701



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +        +   AL  +    D+D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITL----PDNAKALAPMEIHGDDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV ++   S+           K  ++VS+   + +   D
Sbjct: 647 LLSITAAGRMLLFPVADLPQLSK----------GKGNKIVSIPAAQAASGED 688


>gi|239626402|ref|ZP_04669433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516548|gb|EEQ56414.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 744

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 264/760 (34%), Positives = 418/760 (55%), Gaps = 29/760 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K
Sbjct: 3   EKIIRTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLDHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q++   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQEFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAQEVYLKDLDKTVNFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD   A ID+PDI  + LME + GPDFPTG +I  ++ +   Y TG G I +RG 
Sbjct: 183 NLGEVVDAVRAYIDDPDISTEQLMEYMPGPDFPTGGIIANKSELPVIYETGAGKIKLRGK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E      D++++V+TEIPY +        L  IA+LV  K++ D+ D+ ++S+++G 
Sbjct: 243 FEVELGKRKADKDKLVITEIPYTMIGAGINKFLVDIADLVESKKLTDVVDISNQSNKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL++ A  + I N LY+ T  +  F VNM+A+ G +PE  +L GIL+ F+ F+ E 
Sbjct: 303 RIVLELRKDADIEKIKNILYKKTKFEDTFGVNMLAIAGGRPETLSLKGILRNFLDFQYEN 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K  D+  V  GL  A   +D ++ I+R S N + A+  L   + + S+I+
Sbjct: 363 TERKYNVLLQKEMDKKEVQEGLITACDCIDLIIAILRGSKNLKDAKACLT--NGDVSNIR 420

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             +   ++ +  +      + +E Q  AILE+RL +L GL    +  E      +I    
Sbjct: 421 FKVQGFEEDAKKL------HFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIAGYK 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL SR  +  +IK +L ++K+E   PRRT I +G   + DE  +  +++V  +   GY 
Sbjct: 475 KILGSRGEMNRVIKDDLAAIKEEFSVPRRTLIEDGPEAVYDESAVQVQEVVFVLDRFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   +                   +        +  F++ G +Y+ KV  +P 
Sbjct: 535 KLLDKSTYERNQETVDTEQ----------VHVVRCLNTDKICLFAASGNLYQIKVMDVPA 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+   +  +     +   +D        +VFATK   V++    +F   
Sbjct: 585 GKLRDKGVPIENLSKYDGAKDSIVYLTCAQD---LKGATLVFATKMAMVKQVPAEEFETN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           NR    A KL   D+++S+     + +++L T  G  +RFP+  I V   + S GVRGI 
Sbjct: 642 NR-MVAATKLQEGDQVISILPVEGQEEVVLQTTSGVFLRFPLEEISVL-KKASRGVRGIK 699

Query: 729 LAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISG 767
           LAK +++  + ++      DY  +  +M  +   +R   G
Sbjct: 700 LAKNEELEKLYLIGDNPVIDYKGKEVHMNRLKLAKRDGKG 739



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           LK   ++  ++    K+  + +F  +NR          +K+ E   ++++ PV   ++++
Sbjct: 616 LKGATLVFATKMAMVKQVPAEEFETNNR------MVAATKLQEGDQVISILPVEGQEEVV 669

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           L +  G  +R P+ EI +  +A++GV     AK+E +  +  I ++ ++D
Sbjct: 670 LQTTSGVFLRFPLEEISVLKKASRGVRGIKLAKNEELEKLYLIGDNPVID 719


>gi|229820420|ref|YP_002881946.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566333|gb|ACQ80184.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 819

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 285/863 (33%), Positives = 421/863 (48%), Gaps = 72/863 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+    ++ I  + + +EMQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+ 
Sbjct: 5   SAPPPADERIVDIDVAEEMQDSFLEYAYSVIYARALPDARDGLKPVQRRILYQMADMGLR 64

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VK AR+ GEVMGK HPHG+ AIYDAL RMAQ +SLRL L++G GNFGS+D D PA
Sbjct: 65  PDRGHVKSARVVGEVMGKLHPHGDTAIYDALVRMAQAFSLRLPLVDGHGNFGSLD-DGPA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  +   L +D VDF PNYD    +P VL +  PN+LVNG  GIAVGM
Sbjct: 124 APRYTEARLAPAALVMTGGLDEDVVDFVPNYDNQLTQPEVLPSAMPNLLVNGASGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+P HNL EV+     +I +PD DL+ALM  + GPD P G  I+G  G+++AY +GRG
Sbjct: 184 ATNMPPHNLVEVIAAARHLIAHPDADLEALMRFVPGPDLPGGGKIVGLDGVRDAYVSGRG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R  + +E  +  R  IVVTE+PY V    + EKIAE VR K++  +A ++D +DR 
Sbjct: 244 SFRTRATARVENLTPRRRGIVVTELPYLVGPERVTEKIAEAVRSKKVQGVAGVQDLTDRQ 303

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G + + +L QLYR T L+  F +N VAL G +P    L  +L  +V  R
Sbjct: 304 HGLRLVIEVKSGFNPEAVLEQLYRATPLEESFGINNVALVGGQPRTMGLRELLTVYVEHR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V  RR++Y L +  +R H++ GL IA+A++DEV+ +IR S +   AR  L+       
Sbjct: 364 LVVTRRRSEYRLRRRSERLHLVEGLLIAIADIDEVIAVIRSSDDAAQARERLVA------ 417

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS  Q   ILEL+L RLT   R ++ +E + L  EI 
Sbjct: 418 --------------------VFDLSTPQADYILELQLRRLTKFSRIELTSERDELQREIA 457

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI------------ 533
           E  ++L   +RL  ++  EL  V ++  TPRRT ++E                       
Sbjct: 458 ELTELLGDPARLRALVSDELAQVANQHGTPRRTVLLESAGAPAAAAAAAPTSGRAGAVPL 517

Query: 534 --VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                   V +S  G + R      R  R G +          D +      +    V  
Sbjct: 518 EIPDTPCWVLLSATGLLART-GDDARPVREGRRAA-------HDAILGSVPATARGEVGL 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNN 645
            +S G + +  V   P   P       + G  +  +++L  GER  T+     D  +   
Sbjct: 570 VTSRGRIVRVNVLDAPALPPTDGPPSLSGGVGVGELVALEPGERPLTLAALGPDAPA--- 626

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +   T  G V+R   S            + L   D+++   T   +++++  T   Q 
Sbjct: 627 --LALGTASGVVKRV--SPEAPAKGDAWEVIALKDGDQVVGAATAADDDEVVFVTSDAQL 682

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  +++R   GR + G+ G+ LA   + ++ A V H D      +       A     
Sbjct: 683 LRFRAASVRP-QGRAAAGMAGVRLAGDVRAVAFAAVAHDDVSTAVVVTVAGSSDALPGTA 741

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           +G  +     +  +   G       + L+ ++  +L                R +   G+
Sbjct: 742 AGSAKVTPLDRFPAKGRGTGGVRAQRFLRGEDAVVLA--------WIGPAPARATGAGGQ 793

Query: 826 GIRATDVSKINEIGALVAVFPVN 848
            I    V +  +        PV+
Sbjct: 794 VIELPAVDERRDSSGTALAAPVH 816



 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 61/211 (28%), Gaps = 33/211 (15%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                  +L +  G   R    A  V  GR +                 AI+    A   
Sbjct: 519 IPDTPCWVLLSATGLLARTGDDARPVREGRRAA--------------HDAILGSVPATAR 564

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV------ 803
             +  +       R+   D   +       S+ G +       L+  E+ +         
Sbjct: 565 GEVGLVTSRGRIVRVNVLDAPALPPTDGPPSLSGGVGVGELVALEPGERPLTLAALGPDA 624

Query: 804 ------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                 +  G  KR S  +            A +V  + +   +V      D+D+++ V+
Sbjct: 625 PALALGTASGVVKRVSP-EAPAKG------DAWEVIALKDGDQVVGAATAADDDEVVFVT 677

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
               L+R     +R   RA  G+     A D
Sbjct: 678 SDAQLLRFRAASVRPQGRAAAGMAGVRLAGD 708



 Score = 45.7 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 91/276 (32%), Gaps = 32/276 (11%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R    D  +  R G+ A      D IL     T   ++ L T
Sbjct: 518 EIPDTPCWVLLSATGLLART--GDDARPVREGRRAAH----DAILGSVPATARGEVGLVT 571

Query: 701 KLGQCVRFPISAIR-------VFAGRNSVGV-RGISLAKGDQVISMAIV-LHADADYDER 751
             G+ VR  +             +    VGV   ++L  G++ +++A +   A A     
Sbjct: 572 SRGRIVRVNVLDAPALPPTDGPPSLSGGVGVGELVALEPGERPLTLAALGPDAPALALGT 631

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +    +      GD  E+ +LK+   V G  +          +  ++ V+      R
Sbjct: 632 ASGVVKRVSPEAPAKGDAWEVIALKDGDQVVGAAT-------AADDDEVVFVTSDAQLLR 684

Query: 812 TSSYDFRISNRSGKGIRATDVS----------KINEIGALVAVFPVNDNDQIILVSDKGT 861
             +   R   R+  G+    ++            ++  +   V  V  +   +  +  G+
Sbjct: 685 FRAASVRPQGRAAAGMAGVRLAGDVRAVAFAAVAHDDVSTAVVVTVAGSSDALPGTAAGS 744

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               P++      R T GV      + E  V +  I
Sbjct: 745 AKVTPLDRFPAKGRGTGGVRAQRFLRGEDAVVLAWI 780


>gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
 gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
          Length = 757

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 377/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVIALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M D D +  E + + +
Sbjct: 449 DQLQALLASERKLNTMIKKEIQADAAAYGDDRRSPLTERAEAKAMSDHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPSAQAAAGEDRLAWLFVLPPQTS 701



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----ALPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
 gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
          Length = 757

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 379/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNNA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    VA+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVVALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGS-----AVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDMEQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLMAILTEWLEF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V +R  Y L+K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRDTVRKRLNYRLDKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E   L  E 
Sbjct: 407 ------------------LMQHFGISETQAEAILELKLRHLAKLEEVKIRGEQEELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADALAYGDERRSPLTERGEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L    + L+       ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 SDLVAKNRAGKAMISLPENAKALTPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPAAQAAAGEDGLAWLFVLPPQTS 701



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK + +   +        +       +D 
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFSDLVAKNRAGKAMISLPENAKALTPLEIH----GPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
 gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
          Length = 755

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/749 (32%), Positives = 378/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L+       ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALTPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPSAQAAAGEDRLAWLFVLPPQTS 701



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +        +       +D 
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALTPLEIH----GPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|266624328|ref|ZP_06117263.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
 gi|288863830|gb|EFC96128.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
          Length = 745

 Score =  524 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 265/760 (34%), Positives = 419/760 (55%), Gaps = 29/760 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIVKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAEEVYLKDLDKTVEFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  +A IDNPDI    LME + GPDFPTG +I  ++G+   Y TG G I +RG 
Sbjct: 183 NLGEVIDAVMAYIDNPDISTRELMEYMPGPDFPTGGIIANKSGLAEIYETGSGKIKLRGK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             IE      D++++V+TEIPY +        L  +AELV  K++ D+ D+ ++S++ G 
Sbjct: 243 IDIELGKRKADKDKMVITEIPYTMIGAGINKFLVDVAELVESKKLTDVVDISNQSNKDGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + I N LY+ T L+  + VNM+A+ G +PE   L GILK ++ F+   
Sbjct: 303 RIVLELKKDADVEKIRNILYKKTKLEDTYGVNMLAIAGGRPETLNLKGILKNYLDFQYHN 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+  LM    + S+IK
Sbjct: 363 ATRKYQALLEKELEKKEIREGLIKACDIIDLIIAVLRGSKNLKDAKACLMT--GDTSNIK 420

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             +    + +  +      + +E Q  AILE+RL +L GL    +  E      +I E  
Sbjct: 421 FRVSGFAEDAKNL------HFTEKQASAILEMRLYKLIGLEILALEKEYKETMAKIAEYR 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL SRS +  +IK++L ++K+E  TPRRT I +G   + DE  +   ++V  +   GY 
Sbjct: 475 HILESRSNMDVVIKKDLAAIKEEFATPRRTLIEDGKEAVYDETAVAVSEVVFVMDRFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   R   +  +            +        +  F++ G +++ K   +P 
Sbjct: 535 KLLDKSTYDRNRETIETEN----------VHVVSCFNTDKICMFTNTGNLHQVKAADIPY 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+   +  +     +   E   S      +FAT+   V+R    +F   
Sbjct: 585 GKLRDKGTPIDNLSKYDGTKEEIIYLCSAE---SMKGSRFLFATRQALVKRVPGEEFETN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           NR+   A KL   D ++S+     E +++L T  G  +RF +  I     +NS GVRGI 
Sbjct: 642 NRT-VAATKLQDGDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEM-KKNSRGVRGIK 699

Query: 729 LAKGDQVISMAIVLHAD-ADYDERICYMKHMSAQRRLISG 767
           LA+G+++ ++ ++      +Y ++  ++  +   +R   G
Sbjct: 700 LAQGEELETVYLLGEDPVVEYKKKEVHLNRLKIGKRDGKG 739



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C    +K    L  + +   KR    +F  +NR          +K+ +   +V++  +
Sbjct: 609 YLCSAESMKGSRFLFATRQALVKRVPGEEFETNNR------TVAATKLQDGDGVVSILVL 662

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
               +++L +  G  +R  + EI    + ++GV     A+ E + +V  + E  +V+
Sbjct: 663 RAETEVVLQTSNGVFLRFALEEIPEMKKNSRGVRGIKLAQGEELETVYLLGEDPVVE 719


>gi|291516760|emb|CBK70376.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum F8]
          Length = 908

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 284/965 (29%), Positives = 454/965 (47%), Gaps = 148/965 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYA GRG++  R  +HIE  +  ++ IV+TE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYANGRGTLTTRAATHIEHVTARKQAIVITELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGERSALTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            EDES    
Sbjct: 634 LPALPASATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKASAEDESEDGA 693

Query: 646 ------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                   +   T++G ++R        ++      + L   DE++       ++ ++  
Sbjct: 694 AEAKPLPPLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVFI 751

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +     + F    +R   GR + G+ GI LA+G +V +  +V      +        +  
Sbjct: 752 SSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYEE 803

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            +  L SG    + ++  DS                     L  +E G  K T    +  
Sbjct: 804 GENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYPT 844

Query: 820 SNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R  
Sbjct: 845 KGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RDG 895

Query: 878 KGVVI 882
            GV +
Sbjct: 896 SGVDL 900


>gi|229817461|ref|ZP_04447743.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
 gi|229785250|gb|EEP21364.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
          Length = 897

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 275/895 (30%), Positives = 429/895 (47%), Gaps = 129/895 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  ++ Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLNPDRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMATN+ T
Sbjct: 137 ARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMATNLAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV+    ++ +PD  L+ LM  + GPD+PTG +I+GR GI+ AYA+GRG++  R 
Sbjct: 197 HNLGEVVNAAKYLMAHPDATLEELMRYVPGPDWPTGGMIIGRDGIREAYASGRGTLSTRA 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +HIE  +  ++ IVVTE+PY V    +LE+I+E V+  ++  I+   D SDR    R+V
Sbjct: 257 TTHIEHVTARKQAIVVTELPYMVGPEKVLERISEGVKNHKLEGISGAIDLSDRHNGTRLV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL ++T LQ  F++N VAL   +P    L  +L+ ++  R  V+ R
Sbjct: 317 IELKTGFDPHAVLVQLLKHTPLQDNFAMNNVALVNGRPHTMGLKEMLQVWIDHRRVVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA +R H++ GL +A+ ++DEV+++IR S N + A+  LM             
Sbjct: 377 RSEFRRTKALERLHLVEGLLLALIDIDEVIQVIRSSENADAAKTRLMA------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I+E   IL
Sbjct: 425 --------------VFDLDDIQAQYILDLRLRRLTKMSRIELESERDDLHKRIEELERIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------------------------- 524
           +S   L  ++  E+     E  TPRRT +++                             
Sbjct: 471 ASDKALDRVVVDEMDGAVAEYGTPRRTVLLDADAEGNLTPVVAEGMTGVSASALEAVKSA 530

Query: 525 ----------------LDMEDEDCIVREDMVVTVSHLGYVKR-VPLSVYRAQRRGGKGRS 567
                            +      I  +   V +S  G + R  P ++   + R   G  
Sbjct: 531 NTVSSAAADVAAAKKAGEQSMALEIEDKPCTVMMSATGLIARATPEALSMFRSRSVSGER 590

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-----ARGKALINIL 622
                 +D +  +F  +T  +    +S G +   +V  LP+         + G     ++
Sbjct: 591 AT----DDQIVSIFRTTTRATYALITSAGRLVLAQVADLPVVPATNTLSLSSGVKADELI 646

Query: 623 SLNQ------GERITTIMPF-------PEDESSWNN------LYVVFATKHGNVRRNKLS 663
              +      GE + T +          +D +  +         +   T+ G V+R    
Sbjct: 647 GQTESTDPIRGEHVVTAIAMEPVSKKHSDDATDSDTTEPQALPPLAIGTRAGVVKRWNRE 706

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               ++    I   L   DEI+       E+ ++  +     + F    +R   GR + G
Sbjct: 707 APTTMDSWSVID--LKDGDEIVFAAIARDEDRLVFISTDSSLLTFEAKNVRP-QGRTAGG 763

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           + GI LA+G +V +  +V      +        +      L S     + ++  DS    
Sbjct: 764 MAGIKLAEGCKVAAFNVVAADKVAW-------TYEEGDNGLTSASGAVVLTVAGDSDA-- 814

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            L  +E G  K T    +    R+  G+R+    K    
Sbjct: 815 -----------------LPGTENGAAKVTPFEMYPTKGRATGGVRSQRFLKGQNT 852



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 83/267 (31%), Gaps = 37/267 (13%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R                 +    D+I+S+   T      L T
Sbjct: 554 EIEDKPCTVMMSATGLIARATPEALSMFRSRSVSGERATD-DQIVSIFRTTTRATYALIT 612

Query: 701 KLGQCVRFPISAIRVFAGRN----SVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
             G+ V   ++ + V    N    S GV+       D++I              +     
Sbjct: 613 SAGRLVLAQVADLPVVPATNTLSLSSGVKA------DELIG-------------QTESTD 653

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +  +  + +   E ++   +D + + + +E +              +  G  KR +   
Sbjct: 654 PIRGEHVVTAIAMEPVSKKHSDDATDSDTTEPQALPPLAIG------TRAGVVKRWNREA 707

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
               +         D+   +E   +V      D D+++ +S   +L+      +R   R 
Sbjct: 708 PTTMD----SWSVIDLKDGDE---IVFAAIARDEDRLVFISTDSSLLTFEAKNVRPQGRT 760

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIV 903
             G+     A+  +V +   +   ++ 
Sbjct: 761 AGGMAGIKLAEGCKVAAFNVVAADKVA 787


>gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5]
 gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 752

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/794 (31%), Positives = 403/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ QEP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYRVEDGD-----IIVTALPHQVSGAKVLEQIAGQMQAKKLPMVADLRDESDHENPCRI 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I       AD ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDGKPQLKNLRALLVEWLEFRVTT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P   R +L++R        
Sbjct: 365 VRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP---RAKLIER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R E + L  E  +  
Sbjct: 414 ------------------FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L+S ++L  +++ ELL   +     RR+ IV       + + + +  E + + +S  G
Sbjct: 456 ALLNSEAKLKKLVRTELLQDAETYGDDRRSPIVARAEAKALSENELMPTEPVTIVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D         ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGYKTAAPGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L+   G     ++  P+D     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGRLTPPPGATFECVL-LPDD-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  ++L+       ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNNAKVLAPRPVADREQNWLASVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   VL   A           + A +R +S   +++   K +   
Sbjct: 680 IGIPGERVASREEYVTDIAVLPDGATL--------VLQAGKRTLSLKADDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++A  PV 
Sbjct: 590 ECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NNAKVLAPRPVA 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLASVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|197303042|ref|ZP_03168090.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
 gi|197297897|gb|EDY32449.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
          Length = 748

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 267/763 (34%), Positives = 415/763 (54%), Gaps = 30/763 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 6   ESQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IYDALA MAQD+    +L++G GNFGS++GD  AA RYTE
Sbjct: 66  KCARIVGDTMGKYHPHGDSSIYDALAVMAQDFKKGQILVDGHGNFGSIEGDGAAAMRYTE 125

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL K+ +DF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+IP
Sbjct: 126 ARLTKFTQEVCLSDLDKNVIDFGPNFDETEKEPVVLPMRVPNLLVNGAEGIAVGMATSIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DG  A + N  +    LM+ I+GPDFPTG +++ +  + N Y TG+G I +R
Sbjct: 186 THNLCEVIDGVKAYMKNDGVTTRQLMKYIKGPDFPTGGIVVNKDDLLNIYETGQGKIKLR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E   G ++Q+V+TEIPY +        L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 246 GKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGI 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 306 RIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKQIIEHHVDFQFEL 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL + R+++ V  GL  A   +D ++ I+R S + + AR  L++        K
Sbjct: 366 ATRKYTTLLEREREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVEGKTENIRFK 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I        +      +  +E Q  AILE+RL RL GL  + ++ E       I    
Sbjct: 426 FSI--------SKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEQTLNNIARYE 477

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I +EL S K E    RRT +      + +E  +  +++V  +   GY 
Sbjct: 478 DILNNYDSMAEVIMEELDSYKKEFGRKRRTVVENAEEAVFEEKKVEEQEVVFLMDRFGYA 537

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V ++VY   +      +            +        +  F+  G +++ KV  LP 
Sbjct: 538 KTVDMAVYERNKEAADSENKY----------IVHCMNTGKLCIFTDTGKMHQVKVLDLPY 587

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ +    E    ++    D        ++FAT  G ++R    +F Q+
Sbjct: 588 GKFREKGTPIDNVSNYTSSEEEIVMIC---DAEQMRFAKLLFATAQGMIKRVDGKEF-QV 643

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +   +A KL   D ++SV+   +  +++L T+ G  +RFP + +     + +VGVRGI 
Sbjct: 644 AKRTIVATKLQEDDRLVSVKVVNETQNLVLQTRNGYFLRFPAADVPEK-KKAAVGVRGIR 702

Query: 729 LAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGD 768
           L K D++    +          Y E+   +  + A +R   G+
Sbjct: 703 LQKKDELEHTYLFEEGTETKVTYGEKTVTLNRLKAAKRDGVGN 745



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 6/102 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  + +G  KR    +F+++ R          +K+ E   LV+V  VN+
Sbjct: 614 CDAEQMRFAKLLFATAQGMIKRVDGKEFQVAKR------TIVATKLQEDDRLVSVKVVNE 667

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              ++L +  G  +R P  ++    +A  GV      K + +
Sbjct: 668 TQNLVLQTRNGYFLRFPAADVPEKKKAAVGVRGIRLQKKDEL 709



 Score = 37.6 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 6/166 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V +A+    E     +          G  + +     + + E   SE +     +   
Sbjct: 507 TVVENAEEAVFEEKKVEEQEVVFLMDRFGYAKTVDMAVYERNKEAADSENKYIVHCMNTG 566

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIIL 855
            +   ++ G   +    D        KG    +VS        + +    +     +++ 
Sbjct: 567 KLCIFTDTGKMHQVKVLDLPYGKFREKGTPIDNVSNYTSSEEEIVMICDAEQMRFAKLLF 626

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + +G + RV   E ++A R    +V     +D+R+VSV+ + E++
Sbjct: 627 ATAQGMIKRVDGKEFQVAKRT---IVATKLQEDDRLVSVKVVNETQ 669


>gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
 gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
          Length = 752

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 247/812 (30%), Positives = 403/812 (49%), Gaps = 74/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT A I+  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        D ++  L+  T L+S + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A  
Sbjct: 352 TILVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++R                            L+E+Q   ILE RL +L  L    IR 
Sbjct: 410 -LIER--------------------------FELTEIQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  +   +L S ++L  +++ EL+   +     RR+ IV       + + + +
Sbjct: 443 EQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +   
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLAAHSLP--SARGQGEPLTGRLTPPPGATFECVL-LPDD-----DALYVVASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +S
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKVS 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +           +GV G  +A  ++ ++   V+               + A +R +S  
Sbjct: 667 DLPQLGKGKGNKIIGVPGDRVASREEFVTDLAVIPEGGTL--------VLQAGKRTLSLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            +++   K +    G+      Q +   +  +
Sbjct: 719 ADDLEHYKGERGRRGSKLPRGFQRVDGLQVEV 750



 Score = 44.1 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GKG+ +            VA     
Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVA---DR 646

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + D +  V+ +G L+   V+++    +  KG  I      +RV S    RE  + D A  
Sbjct: 647 EQDWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGV-PGDRVAS----REEFVTDLAVI 700

Query: 909 TE 910
            E
Sbjct: 701 PE 702


>gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
 gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
          Length = 764

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 303/848 (35%), Positives = 446/848 (52%), Gaps = 123/848 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V I +E++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M  MG+   K +VK 
Sbjct: 2   DIIEVPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G V+G YHPHG+ A+YDAL RMAQD+++   LI GQGNFGSVDGDPPAA RYTE +
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAK 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL+D+ K+TVDF PN+DGS +EP VL +++PN+L NG  GIAVG+AT+IP HN
Sbjct: 122 LSRYALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV    + +  NP +    +M II+GPDFPTG ++     +   Y  GRG + IR  +
Sbjct: 182 LSEVCKAVIELAKNPHMTTQEIMRIIKGPDFPTGGIVENYQELLEFYEKGRGQVRIRAKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EK +G REQIVVTEIPYQVNKA ++++IAELVR+ R+ +I+D+RDESD++G R+VIEL
Sbjct: 242 HVEKVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR AS + +L +LY+ T+L+  F +N V L   +P +  +  +L+ F+  R EV++RR++
Sbjct: 302 KRDASGEKVLEKLYKLTALRKNFPINFVVLIDGEPRQVGIKTLLQEFIRHRLEVILRRSR 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KA +R H++ GL  A+ANLD V+  IR S +   AR +L ++              
Sbjct: 362 YLLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKK-------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+ +Q  A+L++RL RLT L R+ +  E   L  +++    ++ S 
Sbjct: 408 ------------YGLTPLQAEAVLDMRLQRLTSLERNKLEEEERGLRQKVEYYRRVIGSE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + I+ +E+  +   L + RRT  VEGL   +         + V +   G +  V   
Sbjct: 456 DERVRILIEEMEELIRTLPSVRRT-FVEGLEGEDKTG-----SITVVIYQNGRILPV--- 506

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                             +E  V ++  V     +   SS G VY     +   GS    
Sbjct: 507 ---------------TSMEEGVVVNILEVPYDDGLFLVSSKGRVYWIGGSQALQGSRIDL 551

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                      QGE +           S  +  +V AT  G +++  L DF      G  
Sbjct: 552 ---------KEQGEYVVGAFV-----RSQASDRLVLATAMGYIKKIPLVDFEY-RAQGMP 596

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +KL   DEI+ +    +E D+LL T  G+ +RFP+  +   AG  S GV GI L   D+
Sbjct: 597 IIKLAEGDEIVRLLQSPEEGDLLLYTHRGRVLRFPVKDVPP-AGVGSKGVVGIKLEDKDR 655

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ +  +L A                                                  
Sbjct: 656 VVGVKAILGA-------------------------------------------------- 665

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              ++IL ++E G  K+ SS +  + +R  KGI     S    +  +V +  V +   ++
Sbjct: 666 ---KYILVITEDGKVKKVSSQEIPVRSRGSKGINVL-FSSRERLADVVPMGEVVN---VM 718

Query: 855 LVSDKGTL 862
           + +  G +
Sbjct: 719 VATLSGKV 726



 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 16/227 (7%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + +       ++++     ++ + L +  G+      S     +         I L + 
Sbjct: 503 ILPVTSMEEGVVVNILEVPYDDGLFLVSSKGRVYWIGGSQALQGSR--------IDLKEQ 554

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            + +  A V    +D       +       + I     E  +            E     
Sbjct: 555 GEYVVGAFVRSQASD----RLVLATAMGYIKKIPLVDFEYRAQGMPIIKLAEGDEIVRLL 610

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +E  +L  + +G   R    D   +    KG+    +   + +  + A+        
Sbjct: 611 QSPEEGDLLLYTHRGRVLRFPVKDVPPAGVGSKGVVGIKLEDKDRVVGVKAILGAKY--- 667

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I+++++ G + +V   EI + SR +KG+ +   +  ER+  V  + E
Sbjct: 668 ILVITEDGKVKKVSSQEIPVRSRGSKGINVL-FSSRERLADVVPMGE 713



 Score = 44.5 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 10/144 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +    ++        E  ++  +H G V R P+        G KG  G+ + D+D V  +
Sbjct: 600 LAEGDEIVRLLQSPEEGDLLLYTHRGRVLRFPVKDVPPAGVGSKGVVGIKLEDKDRVVGV 659

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
             +     +L  +  G V K     +P+ S  ++G   IN+L  +  ER+  ++P  E  
Sbjct: 660 KAILGAKYILVITEDGKVKKVSSQEIPVRSRGSKG---INVL-FSSRERLADVVPMGE-- 713

Query: 641 SSWNNLYVVFATKHGNVRRNKLSD 664
                + V+ AT  G V  +KL +
Sbjct: 714 ----VVNVMVATLSGKVFYDKLEE 733


>gi|153855241|ref|ZP_01996407.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
 gi|149752240|gb|EDM62171.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
          Length = 746

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 265/763 (34%), Positives = 421/763 (55%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 2   QDSQIIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKDIVDFIPNFDETEKEPVVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEVVDG  A + N +I    LM+ I+GPDFPTG +++ +  +   Y TG G I I
Sbjct: 182 PTHNLGEVVDGVKAYMKNEEITTRQLMKYIKGPDFPTGGIVVNKDDLPEIYETGTGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E   G ++++V+TEIPY +        L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEDMKGGKKRLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++A V F+ +
Sbjct: 302 IRIVIDLKKGADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKRIIEAHVDFQFD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K +D+  +  GL  A   +D ++ I+R S N + A+  LM         
Sbjct: 362 MATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSQNVKDAKACLMNGETENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I        +    G +  +E Q  AILE+RL +L GL  + ++ E      +I++ 
Sbjct: 422 KSSI--------SKKMAGMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLAKIEKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L  +K E    RRT +      + +E  +  +++V  +   GY
Sbjct: 474 EDILNNYDSMAAVIMEDLDRIKKEFARKRRTVVENAEEAVFEEKKVEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V +S Y   +             ++    +        +  F+  G +++ KV  +P
Sbjct: 534 AKTVDVSTYERNKEAA----------DNENKYILHCMNTGKICIFTKDGKMHQVKVMDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G+ + NI + +  +     +    D        ++FATK G +++ + ++F Q
Sbjct: 584 YGKFRDKGQPIDNISNYDSTQEEIVYIC---DSEQMRYAKLLFATKQGMIKKVEGTEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   DE++ ++  T+   I+L T  G  +RFP + +     + ++GVRGI
Sbjct: 640 VTKRTITATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPAAEVTEK-KKGAIGVRGI 698

Query: 728 SLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISG 767
            L K D +  + +          Y E+   +  +   +R  +G
Sbjct: 699 RLKKDDALTDVYLFEEGTECKISYHEKEVTLNRLKLAKRDGTG 741



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  +++G  K+    +F+++ R          +K+     +V +  V +
Sbjct: 611 CDSEQMRYAKLLFATKQGMIKKVEGTEFQVTKR------TITATKLQPEDEVVKIQVVTE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           N  I+L +  G  +R P  E+    +   GV      KD+ +  V    E
Sbjct: 665 NQHIVLQTTDGFFLRFPAAEVTEKKKGAIGVRGIRLKKDDALTDVYLFEE 714


>gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica]
          Length = 748

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 380/747 (50%), Gaps = 59/747 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  EV +  V ++D P   LD LME ++GPD+PT A +I     I+  Y  GRGS
Sbjct: 183 DIPPHNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  +     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWSKEDGN-----VVITALPHQVSGAKILEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++N L+  T L+  + VN+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V +R  + L K   R HVL GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPKPV---LMAR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGLSETQTEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   IL S  +L  ++K+E+++        RR+ + E      M + D    E + + +
Sbjct: 449 DKLQAILGSERKLNTLLKKEIIADAATYGDERRSPMRERDEAKAMSEHDITPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  + G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPAGLNYKAGDSFRGAARGKSNQPVVFIDTTGRSYSLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  +  ++   +++        + A+  G       
Sbjct: 561 PRDLP--SARGQGEPLTGKLTLPAGATVEHVLMASDEQK------FLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
           SD +  NR+GK  + L     +++       Q++ +L  T  G+ + FP++ +   +   
Sbjct: 613 SDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLAITSTGRMLMFPVADLPQLSKGK 672

Query: 721 SVGVRGISLAKGDQVISMAIVLHADAD 747
              +  +  A GD+++S   +L   + 
Sbjct: 673 GNKIISVQAASGDELLSGLFILPPQSS 699



 Score = 45.3 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQ  L  S+ G+G   +  D    NR+GK +        N             +D 
Sbjct: 591 MASDEQKFLMASDAGYGFICTFSDLVAKNRAGKALITL---PENANVMTPLEINNEQDDM 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVS 893
           ++ ++  G ++  PV ++   S+  KG  I S   A  + ++S
Sbjct: 648 LLAITSTGRMLMFPVADLPQLSKG-KGNKIISVQAASGDELLS 689


>gi|254432446|ref|ZP_05046149.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
 gi|197626899|gb|EDY39458.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
          Length = 834

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 285/770 (37%), Positives = 420/770 (54%), Gaps = 56/770 (7%)

Query: 1   MTEHIISS----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M E   +     D   +  I  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRI
Sbjct: 1   MAEERGNERNGGDPGGDGRIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M ++G+  ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GN
Sbjct: 61  LFAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           FGSVD DPPAA RYTE RL   AH   LD++G DTVDF PN+DGS QEP VL A+ P +L
Sbjct: 121 FGSVDDDPPAAMRYTETRLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVGMATNIP HNLGEVVD  +A+I  PD+  + L  ++ GPDFPTG  +L  +
Sbjct: 181 LNGCTGIAVGMATNIPPHNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSS 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVRE 290
           G+++ Y  GRGSI +RGV+HIE+         R  +V+TE+PYQ++KA  +EK+AE V +
Sbjct: 241 GVRDTYRLGRGSIPMRGVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVND 300

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I  IAD+RDESDR+G RVV+EL+R A+AD +L +L R T+LQS F   ++AL   +P 
Sbjct: 301 GKIGGIADIRDESDREGMRVVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPV 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + +L  +L+ F+ +RE  ++RRT++ L +  DR  V+ GL  A+  L EV+ +I  + + 
Sbjct: 361 QLSLRRLLQEFLDYRELTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADA 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            +AR  L  R                          + LSE Q  A+L + L RLTGL +
Sbjct: 421 ASARASLQVR--------------------------LDLSERQADAVLAMPLRRLTGLEQ 454

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + +R E   L  E      +L  R  LL  +  E  ++K    TPRRTR+VEG  D+  +
Sbjct: 455 ESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALKKRYGTPRRTRLVEGGDDLVAQ 514

Query: 531 -----DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED--------FV 577
                           +  L    RV +   RA +       G +  +E           
Sbjct: 515 RAAAARPNAELQRQQALEALASDSRVLIQADRAVKIVTPQVLGRLHLEEPAPLGEHPAPA 574

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L  V++   VL F++ G V   + W      P    + L + L   +G  +  ++P  
Sbjct: 575 QLLLTVASQPQVLAFTTDGRVAVLR-WEFAGQQPGPLERFLPDSL---EGASVMQVLPL- 629

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
             E S  +L +   +  G  +R  L D   ++      +KL     +  V  C    +++
Sbjct: 630 -QEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELV 688

Query: 698 LTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           + +  G+ +R   +  +    GR + G   + L   +Q++  A V  + +
Sbjct: 689 VASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPASGS 738



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           QE       I  +S  G  KR    D + +S R      A  V K+ E   L  V P   
Sbjct: 630 QEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGR------AATVLKLKEGVTLQRVVPCRS 683

Query: 850 NDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++++ S  G ++R+  NE  + +  R  +G V+     DE++V    +  S
Sbjct: 684 GAELVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPAS 736


>gi|323342061|ref|ZP_08082294.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464486|gb|EFY09679.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 822

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 258/796 (32%), Positives = 421/796 (52%), Gaps = 43/796 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  + I D +   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K Y 
Sbjct: 3   HDSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ RM+Q W + + LI+ QGN GS+D DP AA RYTE
Sbjct: 63  KSAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  LL+++ ++ V F  N+D    EP VL ARYPN+LVNG  GIA G ATNIP 
Sbjct: 123 ARISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            NL E++D  +  + NP+  ++ +M +++GPDFPTGA+I G+ GI++    G+G IV+R 
Sbjct: 183 FNLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGAIIQGQEGIEDIIRKGKGRIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---IADLRDESDRQGYR 309
            + I   +   +QIV+TE+PY+V K+ ++ KI EL   K       + D+RDESDR G R
Sbjct: 243 KAEI-VENKSMKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+ KR A+ + ILN  Y+YT LQ  ++ NMVA+   +P+   L+ +L A++ FR+EVV
Sbjct: 302 IVIDCKRDANVESILNLFYKYTELQVYYNANMVAIVDQRPKVCGLLEVLDAYLKFRQEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + R+KY   +   R H+L GL  A +NLDE++ +IR S N   +R  +M           
Sbjct: 362 LNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q  AI++L+L RL+    + +R+E   L  E++    
Sbjct: 413 -----------------FGFTEAQATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDL 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGY 547
           ++++   L  +I +E + +K+  DTPRR+ I   + ++E +       E ++VTVS  GY
Sbjct: 456 VINNIDMLNNMIVKEFMEIKEAFDTPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K+V L  Y + +     +  + + DED       V T   ++F +S G      V  + 
Sbjct: 516 LKKVSLRSYGSSQ-----KDVIALMDEDMPVFSSEVETTDYLVFVTSRGRYGMILVHEID 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G  +   +  +  E+I ++      ++     ++V +T  G +++  +S+   
Sbjct: 571 EARWRDTGSHINQYMKCDPNEKIISVFTLKSFDTY---RFIVTSTASGMIKKTAISELEV 627

Query: 668 INRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +     MKL   DE++     + +  +LL +K GQC+R  ++ I     R + GV G
Sbjct: 628 KRTNRLYDVMKLGKHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEINPIGLR-AKGVIG 686

Query: 727 ISLAKGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           + L   D+V+S M +   ++  +      MK + AQ   I+    + TS+        + 
Sbjct: 687 MKLKLNDRVVSTMGLSDESEVVFVSDRFQMKRIKAQDIAINNRATQGTSIVKMVKSNPHC 746

Query: 786 SEERCQELKLKEQFIL 801
             E           I 
Sbjct: 747 LAELFVGNIQDHILIY 762



 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 91/246 (36%), Gaps = 9/246 (3%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N   +V  ++ G +++  L  +    +     + L   D  +        + ++  T  G
Sbjct: 503 NEAVMVTVSRDGYLKKVSLRSYGSSQKD---VIALMDEDMPVFSSEVETTDYLVFVTSRG 559

Query: 704 Q--CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           +   +         +    S   + +     +++IS+  +   D  Y   +        +
Sbjct: 560 RYGMILVHEIDEARWRDTGSHINQYMKCDPNEKIISVFTLKSFD-TYRFIVTSTASGMIK 618

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           +  IS    + T+   D    G   E     +   ++ +L VS++G   R    +     
Sbjct: 619 KTAISELEVKRTNRLYDVMKLGKHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEINPIG 678

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
              KG+    +   +    +V+   ++D  +++ VSD+  + R+   +I I +RAT+G  
Sbjct: 679 LRAKGVIGMKLKLNDR---VVSTMGLSDESEVVFVSDRFQMKRIKAQDIAINNRATQGTS 735

Query: 882 IFSTAK 887
           I    K
Sbjct: 736 IVKMVK 741


>gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48]
 gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48]
          Length = 751

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/782 (31%), Positives = 398/782 (50%), Gaps = 70/782 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 9   EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 68

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 69  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 128

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 129 ARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 188

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   L+ L E I+GPD+PT A I+  R  I   Y TG+GSI +R
Sbjct: 189 HNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYETGKGSIRMR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 249 AVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I       A  ++  L+  T L+S + VN+  +    +P+  +L  +L  ++ FR   
Sbjct: 304 VIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDGRPQLKSLRALLLEWLEFRIGT 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A   L+ R        
Sbjct: 364 VRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQA---LIAR-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q   ILE RL +L  L    IR E + L  E K   
Sbjct: 413 ------------------FDLTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQKRLT 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +L S ++L  +++ ELL   +     RR+ IVE      + + + +  E + V +S  G
Sbjct: 455 TLLGSDAKLRKLVRSELLEDAETYGDDRRSPIVERAEAKALSENELMPTEPVTVVLSEKG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D         ++   +   S G  Y      L
Sbjct: 515 WV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSL 566

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L+   G     ++  PEDE+       V A+  G     K  D  
Sbjct: 567 P--SARGQGEPLTGRLTPPPGATFECVL-LPEDEA-----LYVVASDAGYGFVVKGEDLQ 618

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  ++++       +++ +   T  G+ + F ++ +           
Sbjct: 619 AKNKAGKGLLSLPNGAKVMTPRPVASREQDWLAAVTTEGRLLVFKVADLPQLGKGKGNKI 678

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +GV G  +A  ++ ++   V+   +           + A +R +S   +++   K +   
Sbjct: 679 IGVPGDRVASREEFVTDLAVISEGSTL--------VLQAGKRTLSLKPDDLEHYKGERGR 730

Query: 782 EG 783
            G
Sbjct: 731 RG 732



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   E   +  S+ G+G      D +  N++GKG+ +            VA     
Sbjct: 589 ECVLLPEDEALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASR--- 645

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + D +  V+ +G L+   V ++    +  KG  I      +RV S    RE  + D A  
Sbjct: 646 EQDWLAAVTTEGRLLVFKVADLPQLGKG-KGNKIIGV-PGDRVAS----REEFVTDLAVI 699

Query: 909 TE 910
           +E
Sbjct: 700 SE 701


>gi|311113428|ref|YP_003984650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944922|gb|ADP41216.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 842

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 405/758 (53%), Gaps = 68/758 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM++S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ +++RL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +PD  L  +M+ I GPD P+G  I+G +GIK+AY +GRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIVGLSGIKDAYESGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             IE+ +  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VI
Sbjct: 257 VSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G +   +L  LY++T L+  F +N VAL   +P+   L+ +L+ ++  R  VV RR
Sbjct: 317 EIKNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQPQTLGLLDLLRVYIDHRLSVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K +DR H++ GL IA+ ++DEV+ IIR S     AR +LM              
Sbjct: 377 TEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMA------------- 423

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ   ILELRL +LT   R ++  E + L  EI E   IL 
Sbjct: 424 -------------VFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILG 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI-----------------VEGLLDMEDEDCIVR 535
           S S L  ++  EL  V ++    RRT +                  +    +     I  
Sbjct: 471 SDSALRELVSDELAEVAEKYGNDRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIAD 530

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V ++  G + R          R      G  ++  D  T +   +    +   +S 
Sbjct: 531 EPCWVLLTASGILGRTVGKPM----REALVDPGKRIK-HDVFTSIVPTTARGEIGAVTST 585

Query: 596 GFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +  V  L +    +       G     +++L +GE++  ++P  E         + 
Sbjct: 586 GRMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPLNE--------VLA 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            AT +G ++R   +    +N++    +KL  +D +++   C+ +++ + L T+  + + F
Sbjct: 638 LATANGVIKRV--NPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTF 695

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + +R         + GI L   D VI++ +     A
Sbjct: 696 DAAKVRPQGRAGGG-IAGIKLGAQDAVIALGVTAPGSA 732



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 24/266 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  T  G + R           +     K    D   S+   T   +I   T  G
Sbjct: 530 DEPCWVLLTASGILGRTVGKPM---REALVDPGKRIKHDVFTSIVPTTARGEIGAVTSTG 586

Query: 704 QCVRFPISAIRVF-----AGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  + VF         + GV+    ++LAKG++++ + + L+           +
Sbjct: 587 RMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGL-VPLNEVLALATANGVI 645

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLKEQFILT-VSEKGFGKRT 812
           K ++ +  L   + + I     D+ +   +  S++    L  +E  +LT  + K   +  
Sbjct: 646 KRVNPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKVRPQGR 705

Query: 813 SSYDFRISNRSGK-GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           +           +  + A  V+       +V    V +    +       +   P+ E  
Sbjct: 706 AGGGIAGIKLGAQDAVIALGVTAPGSAAEVV---TVTNGQDGM---ASAKV--TPLAEYP 757

Query: 872 IASRATKGVVIFSTAKDERVVSVERI 897
              RAT GV        E  +++  +
Sbjct: 758 QKGRATGGVRAHRFLTGESKLALAWV 783


>gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 385/749 (51%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P   +  LMQR    
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP---KPLLMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+L+        RR+ +   E    M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEILADAAAYGDDRRSPLTEREEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAACGKSNQPVVFMDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTLPPGANIEHVLMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I  A      D+++ + ++    +
Sbjct: 673 NKIVSIPAADAATGKDRLVWLFVLPPQTS 701



 Score = 42.2 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----ALPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
          Length = 522

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 268/518 (51%), Positives = 361/518 (69%), Gaps = 9/518 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 5   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 65  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 125 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 185 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 244

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 245 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 305 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++
Sbjct: 365 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 424

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 425 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 484

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            E L IL S  RL+ +I++EL  V+++    RRT I  
Sbjct: 485 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITA 522


>gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus]
          Length = 545

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 282/570 (49%), Positives = 392/570 (68%), Gaps = 27/570 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT + V  ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +    +R+Q+RGG+G  G  + D+DFV D+
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDI 545



 Score = 41.4 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 13/192 (6%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR +        R+  +   L + D +  V T  + +      +     RF ++     
Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTE---- 415

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R S  +  + L +   +    I    D            ++   R+I+   EE+   K
Sbjct: 416 --RQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESK 473

Query: 777 ND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                      + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ 
Sbjct: 474 RKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQG 533

Query: 830 TDVSKINEIGAL 841
           T V+  + +  +
Sbjct: 534 TGVNDDDFVRDI 545


>gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
 gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
          Length = 757

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 381/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +L + TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGS-----AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D +++ L+  T L+  + +NM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R H+L GL IA  N+DEV+ IIR   +P   +  LMQR    
Sbjct: 358 RRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDP---KPLLMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FSISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIAPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+ +       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEHVLMAPDSQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    ++L        ++ +L  T +G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITAVGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPAAQAAAGEDRLAWLFVLPPQTS 701



 Score = 39.1 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       L  +     +D 
Sbjct: 591 MAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----VLPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAVGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 749

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/803 (31%), Positives = 398/803 (49%), Gaps = 67/803 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +SS +   +G   + + D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MSSLDLNLEGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D    
Sbjct: 61  SAASKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL   A  LL +LG+ TVD+ PN+DG+ +EP VL AR PNVL+NGG GIAV
Sbjct: 121 FAAMRYTESRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HNL EV   CV ++DNP   +  L E I+GPDFPT A +I  R  ++  Y +
Sbjct: 181 GMATDIPPHNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYES 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G G + +R     E T      I++T +PYQV+ + +LE+IA  +  K++  + DLRDES
Sbjct: 241 GNGGLRMRARYEREGTD-----IIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDES 295

Query: 304 DRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360
           D +    ++   R    +V  ++  L+  T L+  + VN+  +    +P+   L+ +L  
Sbjct: 296 DHEHPTRLVIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDGRPQVKGLLTLLGE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR E V RR ++ L+K   R H+L GL IA  N+DEV+RIIR +  P+     LM+R
Sbjct: 356 WLHFRTETVRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEPKPV---LMER 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L++ Q  AILEL+L  L  L    IR E + L
Sbjct: 413 --------------------------FGLTDTQAEAILELKLRHLAKLEEMKIRGEQDEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDM 538
             E       L S +RL  +I++E+ +  ++    RR+ IV       M++ + +  E +
Sbjct: 447 EKERDSLEKTLGSAARLKRLIREEIQADAEKFGDERRSPIVARAAAQAMDESELVPTEPL 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S +G+V        RA +       G+  +  D         ++   +F  S G  
Sbjct: 507 TVVLSKMGWV--------RAAKGHDVDAEGLSYKSGDAFLSAARGRSNQPAVFIDSTGRT 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      LP  S + +G+ L   LS   G R   +M          +   + +T +G   
Sbjct: 559 YTLPAHTLP--SARGQGEPLSGRLSPPDGARFVGVMM------GAPSDLFLLSTDYGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVF 716
              L D    N++GK  + + +  ++L          + I   T  G  +   ++ +   
Sbjct: 611 VCSLEDMQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAATSEGHLLVTRLNELPRM 670

Query: 717 AG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           A       + V    L   ++ ++ AI L  D +    +   K     + +   + +E  
Sbjct: 671 ARGKGNKIINVPSAKLKTREEWVA-AITLVQDGEPLTVVAGKK----FKTMKGPEVDEYA 725

Query: 774 SLKNDSSVEGNISEERCQELKLK 796
           + +     +     ++  ELK++
Sbjct: 726 AERGKRGKKLPRGFQKVDELKVE 748



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +       L  ++ G+G   S  D +  N++GK +    V    ++   V V  + D D 
Sbjct: 593 MGAPSDLFLLSTDYGYGFVCSLEDMQSRNKAGKAV--LSVPAGAKVLPPVRVRDI-DADW 649

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
           I   + +G L+   +NE+   +R  KG  I +        ++E V ++  +++ E
Sbjct: 650 IAAATSEGHLLVTRLNELPRMARG-KGNKIINVPSAKLKTREEWVAAITLVQDGE 703


>gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
          Length = 757

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/749 (31%), Positives = 379/749 (50%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I  A      D+++ + ++    +
Sbjct: 673 NKIVSIPAADAAAGKDRLVWLFVLPPQTS 701



 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----ALPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           31758]
 gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola]
 gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1]
 gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII]
 gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola]
 gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004]
 gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038]
 gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 757

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 381/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +L + TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGS-----AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D +++ L+  T L+  + +NM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R H+L GL IA  N+DEV+ IIR   +P   +  LMQR    
Sbjct: 358 RRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDP---KPLLMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FSISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+ +       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEHVLMAPDSQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    ++L        ++ +L  T +G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITAVGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL     
Sbjct: 673 NKIVSIPAAQAAAGEDRLAWLFVLPPQTS 701



 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       L  +     +D 
Sbjct: 591 MAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----VLPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAVGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|260906706|ref|ZP_05915028.1| DNA topoisomerase IV subunit A [Brevibacterium linens BL2]
          Length = 915

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 273/841 (32%), Positives = 417/841 (49%), Gaps = 93/841 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V ++ EM++S+L YA++VI  RA+PD RDGLKPV RRI++ M  MG+   + +V
Sbjct: 3   EGRVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHV 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K +RI G+VMGK HPHG+ AIYDAL R++Q + +R+ L++G GNFGS+D D PAA RYTE
Sbjct: 63  KSSRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  A+  ++  L +D VDF  NYD +  +P VL + +PN+L+NG  GIAVGMATN+  
Sbjct: 122 ARLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN GEV+  C  +I NP+  L  LM  I GPD PTG  I+G  G++ AY TGRG+   R 
Sbjct: 182 HNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPTGGRIIGLDGVREAYETGRGTFRTRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVV 311
              IE  +  R+ IVVTE+PY V    ++ K+ + V  K++  IA + D SDR  G R+V
Sbjct: 242 TVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGMRLV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I +K G + + +L +LYR T L+  FS+N V L   +P    L  +L  ++A R +V+ R
Sbjct: 302 IGIKNGFNPEAVLAELYRQTPLEESFSMNNVCLVDGQPRTLGLRELLTVYLAHRIDVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+DR H++ GL IA+ ++DEV+++IR S +  TAR  LM             
Sbjct: 362 RTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLMD------------ 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q   IL+L+L RLT   R ++  E + L  +I    D+L
Sbjct: 410 --------------VFELSELQATYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDMVVTVS 543
           +  ++L  ++  EL +  + + +PRRT ++EG            + +  I      V +S
Sbjct: 456 ADEAKLRELVATELEATAEAIGSPRRTVLIEGSMKELSAKGKKAQADLKIADAPCRVLLS 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R   +    QR G +          D +    + +T   V   +S G ++   V
Sbjct: 516 TSGRIARTADASPL-QRVGKR-------SSHDALRSEIVSTTQGKVGAVTSTGRLHMVDV 567

Query: 604 WRLPIGSPQAR------GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             LP   P A       G  + + ++L + E +  ++          +   V  T  G V
Sbjct: 568 VDLPALPPAATRPNVAGGVKIADYVTLEKNETVLGLIDL--------DREFVLGTAGGVV 619

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
           +R  ++   + N+S   A+ L  +D ++ V      ++   +  T   Q + F  S +R 
Sbjct: 620 KRVSVA--ARPNKSEWEAITLKGKDSVIGVAQPKDIDESLAVFVTSNAQLLAFDASGLRA 677

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G N+ GV G+ +A                               R L  G T +    
Sbjct: 678 -QGWNASGVAGMKVAAD----------------------------ARALFFGMTPKAAKT 708

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   + NI       +   E F    S     K +   ++    R+  G+RA    K 
Sbjct: 709 DEEGDADTNIGTFAVVTVASGENFYGAPSSS--IKVSDFSEYPTKGRATSGVRAHKFLKG 766

Query: 836 N 836
            
Sbjct: 767 E 767


>gi|317482444|ref|ZP_07941461.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916104|gb|EFV37509.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
          Length = 909

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 286/966 (29%), Positives = 455/966 (47%), Gaps = 149/966 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 634 LPALPATATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 693

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 751

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LAKG +V +  +V      +        + 
Sbjct: 752 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAKGARVAAFNVVPAGKVAW-------TYE 803

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 804 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 844

Query: 819 ISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
              R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R 
Sbjct: 845 TKGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RD 895

Query: 877 TKGVVI 882
             GV +
Sbjct: 896 GSGVDL 901


>gi|213691857|ref|YP_002322443.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523318|gb|ACJ52065.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457952|dbj|BAJ68573.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 909

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 285/966 (29%), Positives = 453/966 (46%), Gaps = 149/966 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  +  Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDHPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG+   R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTFTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSALTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNARSASDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 634 LPALPAAATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKASAKDESEDGG 693

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 751

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LA+G +V +  +V      +        + 
Sbjct: 752 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYE 803

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 804 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 844

Query: 819 ISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
              R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R 
Sbjct: 845 TKGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RD 895

Query: 877 TKGVVI 882
             GV +
Sbjct: 896 GSGVDL 901


>gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 757

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 238/749 (31%), Positives = 379/749 (50%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+ +       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDSQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    ++L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I  A      D+++ + ++    +
Sbjct: 673 NKIVSIPAADAAAGKDRLVWLFVLPPQTS 701



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       L  +     +D 
Sbjct: 591 MAPDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----VLPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|189439166|ref|YP_001954247.1| DNA topoisomerase IV subunit A [Bifidobacterium longum DJO10A]
 gi|239621283|ref|ZP_04664314.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132598|ref|YP_003999937.1| para [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691358|ref|YP_004220928.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427601|gb|ACD97749.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum DJO10A]
 gi|239515744|gb|EEQ55611.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773543|gb|ADQ03031.1| ParA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456214|dbj|BAJ66836.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 909

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 285/966 (29%), Positives = 455/966 (47%), Gaps = 149/966 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 634 LPALPATATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 693

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 751

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LA+G +V +  +V      +        + 
Sbjct: 752 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYE 803

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 804 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 844

Query: 819 ISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
              R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R 
Sbjct: 845 TKGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RD 895

Query: 877 TKGVVI 882
             GV +
Sbjct: 896 GSGVDL 901


>gi|300741347|ref|ZP_07071368.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300380532|gb|EFJ77094.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 842

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 265/758 (34%), Positives = 405/758 (53%), Gaps = 68/758 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM++S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ +++RL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +PD  L  +M+ I GPD P+G  I+G +GIK+AY +GRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIVGLSGIKDAYESGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             IE+ +  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VI
Sbjct: 257 VSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G +   +L  LY++T L+  F +N VAL   +P+   L+ +L+ ++  R  VV RR
Sbjct: 317 EIKNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQPQTLGLLDLLRVYIDHRLSVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K +DR H++ GL IA+ ++DEV+ IIR S     AR +LM              
Sbjct: 377 TEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMA------------- 423

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ   ILELRL +LT   R ++  E + L  EI E   IL 
Sbjct: 424 -------------VFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILG 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI-----------------VEGLLDMEDEDCIVR 535
           S S L  ++  EL  V ++    RRT +                  +    +     I  
Sbjct: 471 SDSALRELVSDELAEVAEKYGNDRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIAD 530

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V ++  G + R          R      G  ++  D  T +   +    +   +S 
Sbjct: 531 EPCWVLLTASGILGRTVGKPM----REALIDPGKRIK-HDVFTSIVPTTARGEIGAVTST 585

Query: 596 GFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +  V  L +    +       G     +++L +GE++  ++P  E         + 
Sbjct: 586 GRMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPLNE--------VLA 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            AT +G ++R   +    +N++    +KL  +D +++   C+ +++ + L T+  + + F
Sbjct: 638 LATANGVIKRV--NPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTF 695

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + +R         + GI L   D VI++ +     A
Sbjct: 696 DAAKVRPQGRAGGG-IAGIKLGAQDAVIALGVTAPGSA 732



 Score = 44.5 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 24/266 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  T  G + R           +     K    D   S+   T   +I   T  G
Sbjct: 530 DEPCWVLLTASGILGRTVGKPM---REALIDPGKRIKHDVFTSIVPTTARGEIGAVTSTG 586

Query: 704 QCVRFPISAIRVF-----AGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  + VF         + GV+    ++LAKG++++ + + L+           +
Sbjct: 587 RMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGL-VPLNEVLALATANGVI 645

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLKEQFILT-VSEKGFGKRT 812
           K ++ +  L   + + I     D+ +   +  S++    L  +E  +LT  + K   +  
Sbjct: 646 KRVNPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTFDAAKVRPQGR 705

Query: 813 SSYDFRISNRSGK-GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           +           +  + A  V+       +V    V +    +       +   P+ E  
Sbjct: 706 AGGGIAGIKLGAQDAVIALGVTAPGSAAEVV---TVTNGQDGM---ASAKV--TPLAEYP 757

Query: 872 IASRATKGVVIFSTAKDERVVSVERI 897
              RAT GV        E  +++  +
Sbjct: 758 QKGRATGGVRAHRFLTGESKLALAWV 783


>gi|160938078|ref|ZP_02085435.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439072|gb|EDP16827.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 744

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/760 (34%), Positives = 412/760 (54%), Gaps = 29/760 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K
Sbjct: 3   EKILRTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMRELHLDHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q++   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQNFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAEEVYLKDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D   A IDNP++    LME + GPDFPTG VI  ++ +   Y TG G I +RG 
Sbjct: 183 NLGEVIDAVQAYIDNPEVTTQELMEFMPGPDFPTGGVIANKSELPQIYETGMGKIKLRGK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E      D+++++++EIPY +        L  +A+LV  K++ D+ D+ ++S+++G 
Sbjct: 243 FEVELGKRKADKDKLIISEIPYTMIGAGINKFLVDVADLVESKKLTDVVDISNQSNKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL++ A  D I N LY+ T L+  F VNM+A+   +PE   L GIL+ F+ F+ E 
Sbjct: 303 RIVLELRKDADIDKIKNILYKKTKLEDTFGVNMLAIADGRPETLNLKGILRNFLNFQYEN 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K  D+  V  GL  A   +D ++ I+R S N + A+  L     + ++I 
Sbjct: 363 TERKYNVLLQKEMDKKEVQEGLIAACDCIDLIIAILRGSKNLKDAKACLTT--GDVTNIH 420

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             +   ++ +  +        +E Q  AILE+RL +L GL    +  E      +I E  
Sbjct: 421 FKVPGFEEDAKKLA------FTERQASAILEMRLYKLIGLEILALEKEHRETLRKIGEYK 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL SR+++  +IK++L ++K E  TPRRT I +G   + DE  +  ++MV  +   GY 
Sbjct: 475 KILGSRAQMNRVIKEDLAAIKAEFATPRRTLIEDGPEAVYDESAVAVQEMVFVMDRFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   +                   +        +  F++ G +Y+ K   +P 
Sbjct: 535 KLLDKSTYDRNQETVDTEQ----------VHVVKCLNTDKICLFAASGSLYQIKAMDVPA 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+   +  +     +   ED         VFATK   V++    +F   
Sbjct: 585 GKLRDKGTPIENLSKFDGAKDTIVYLTSAED---MKGRIFVFATKMAMVKQVPSEEFETN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           NR    A KL   DE+ +V     E ++++ T  G  +RF +  I     + S GVRGI 
Sbjct: 642 NR-VVAATKLQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEI-SMLKKASRGVRGIR 699

Query: 729 LAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISG 767
           L K +++  + ++  +   DY  +  ++  +   +R   G
Sbjct: 700 LTKNEELEKLYLIGENPIVDYKGKEVHLNRLKLAKRDGKG 739



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 6/110 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +K +  +  ++    K+  S +F  +NR    + AT + + +E   L AV PV    +++
Sbjct: 616 MKGRIFVFATKMAMVKQVPSEEFETNNR---VVAATKLQEGDE---LAAVIPVEGETEVV 669

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +  G  +R  + EI +  +A++GV      K+E +  +  I E+ IVD
Sbjct: 670 IQTTGGVFLRFALEEISMLKKASRGVRGIRLTKNEELEKLYLIGENPIVD 719


>gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703]
          Length = 758

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 384/749 (51%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P   +  LMQR    
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP---KPLLMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ +   E    M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTEREEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFMDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTLPPGANIEHVLMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I  A      D+++ + ++    +
Sbjct: 673 NKIVSIPAADAAAGKDRLVWLFVLPPQTS 701



 Score = 41.4 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAK----ALPPLEIYGSDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|331090928|ref|ZP_08339770.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405150|gb|EGG84686.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 746

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/726 (34%), Positives = 399/726 (54%), Gaps = 27/726 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G++++K Y
Sbjct: 2   QDSQLIRTEYSEVMKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIKYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+ MGKYHPHG+++IY++L  MAQD+   + L++G GNFGS++GD  AA RYT
Sbjct: 62  RKSARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL +      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLARLTQEAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEVVD   A + N  I    LM+ ++GPDFPTGA+++ +  + + Y TG G I +
Sbjct: 182 PTHNLGEVVDAVKAYMKNNGITTKQLMKYVKGPDFPTGAIVVNKDDLLSVYETGSGKIKL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G ++++V++EIPY +        L  +A LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEEGKGGKKKLVISEIPYTMIGAGIGKFLNDVASLVETKKTNDITDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+    + + N LY+ T L+  F VNM+A+   KPE   L  I++  V F+ E
Sbjct: 302 IRIVLELKKDTDVENLKNMLYKKTRLEDTFGVNMLAVADGKPETMGLKKIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K  D+  +  GL  A   +D ++ I+R S + +  +  L     +    
Sbjct: 362 LATRKYKNLLGKELDKKEIQEGLIKACDVIDLIIEILRGSKSIKDVKACLTNGVTDNISF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I        +      +  +E Q  AILE+RL +L GL  + ++ E       I   
Sbjct: 422 KSNI--------SKKMASMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I +EL   K      RRT I      + +E  +  +D+VV +   GY
Sbjct: 474 EDILNNYDSMAEVIMEELDYYKKTYGRKRRTVIENAEEAVYEEKKVEEQDVVVLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + +  + Y   +      +            +        +  F++ G +++ KV  +P
Sbjct: 534 TRSIDTATYDRNKESADSEN----------KHIIFCKNTGKICMFTNTGKMHQVKVLDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  E     +    DE  +    ++FATK+G +++   ++F+ 
Sbjct: 584 FGKFRDKGTPVDNLSNYDSAEENIIYIC---DEEQFRMGKMLFATKYGMIKKVDGAEFV- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +++    A KL   DE++S++   +  +I+L T  G  +RF    +     + ++GVRGI
Sbjct: 640 VSKRTITATKLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEVAEK-KKGAIGVRGI 698

Query: 728 SLAKGD 733
            L K D
Sbjct: 699 KLQKTD 704



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E + +   +L  ++ G  K+    +F +S R          +K+ E   +V++ PVN+
Sbjct: 611 CDEEQFRMGKMLFATKYGMIKKVDGAEFVVSKR------TITATKLQEEDEVVSIQPVNE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           N  I+L +  G  +R    E+    +   GV      K + + +V    E
Sbjct: 665 NQNIVLQTGGGYFLRFLAEEVAEKKKGAIGVRGIKLQKTDILENVYLFEE 714


>gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 751

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 396/794 (49%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLSEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  +  
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L    +++        + N +   T  G+ + F +S +           
Sbjct: 620 AKNKAGKALLSLPGGAKVILPRPVADRELNWLAAVTTEGRLLVFKVSDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----GGAKVILPRPVA 644

Query: 849 DND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +   +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DRELNWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 751

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 397/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLSEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  +  
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEARALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L    +++        ++N +   T  G+ + F +S +           
Sbjct: 620 AKNKAGKALLSLPGGAKVILPRPVADREQNWLAAVTTEGRLLVFKVSDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVITQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.8 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----GGAKVILPRPVA 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|50365126|ref|YP_053551.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
 gi|50363682|gb|AAT75667.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
          Length = 908

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 262/822 (31%), Positives = 427/822 (51%), Gaps = 43/822 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I +S+ E EKGI S ++ D M   +  YA  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MAKKIDNSNIESEKGIISYALEDLMGERFGRYAKYIIQERALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ + ++K Y K AR+ GEV+GKYHPHG+ +IYDA+ RM+Q W L + LI+ QGN GS+
Sbjct: 61  NELNLTYDKPYKKSARVVGEVIGKYHPHGDTSIYDAMVRMSQWWKLGMPLIDMQGNNGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +LDDL K+TV F PN+D S +EP VL + +PN+LVNG  
Sbjct: 121 DGDNAAAMRYTETRLAKISDLMLDDLNKNTVKFAPNFDDSEKEPTVLPSYFPNILVNGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATN+P HNLGE++D  + +I  P+  +D ++EI++GPDFPTG  + GR GIK+A
Sbjct: 181 GIAAGYATNMPPHNLGEIIDATIKLIRTPNTRIDTILEIVKGPDFPTGGTVQGRNGIKDA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TG+G +++    H E  +     I++ EIPY+V K  +++KI +++     + I ++R
Sbjct: 241 FTTGKGKVIVNSKWHEEDNN-----IIIDEIPYEVVKQDLVKKIGDVIDANPGLGILEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+ I+L   A+ D +   L++ T L   ++ N VA+   +P++  +I ++ A
Sbjct: 296 DETDRNGLRIAIDLSDKANLDTVRKFLFKSTPLSISYNYNNVAIVDLQPKQLGIIELIHA 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A  +EV   RT++ LNKA  R  +++GL  A++ LD+V+ +IR S N   A   L+ +
Sbjct: 356 YIAHYKEVFTFRTQFDLNKAEKRLEIILGLIKAMSILDQVISVIRSSTNRSDAIENLISK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q  AI+++RL RLT      ++NE   L
Sbjct: 416 --------------------------FVFSQPQAAAIVDMRLYRLTSTDVVKLQNEKEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDM 538
            + I +   IL+S   +   I   L  VK +  TPRR+ + + +   D+E ++ +V  + 
Sbjct: 450 DVNIAKLKAILNSEEVMDNEIINRLREVKKQFPTPRRSIVEDSIENLDVEQKEVLVEHEY 509

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K +   +         GR     +  D       VS    ++  ++ G  
Sbjct: 510 NLWISKDGYLKAIESKLISKNDPAVFGR-----KPNDMWIAAGEVSNLQHLILVTNKGTY 564

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y   +++LP+   +  G  +  I +++  E I +     +   +     ++  +K+GN++
Sbjct: 565 YSIPLYKLPMSKWRDMGVHVNTIATMDPSEHIVSAFVVKDFAEALQQ--ILITSKNGNIK 622

Query: 659 RNKLSD-FIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVF 716
           R  + D   +I       MKLD+ DEI+S    T +     + T+ G  VR+ I  I   
Sbjct: 623 RIPVKDLETKIFTRAFRIMKLDAVDEIVSASLITSKTRTCGIITRNGYGVRYHIEDI-PV 681

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G NS GV+  +L +   V  + +       Y      +K    +   I    +    + 
Sbjct: 682 QGTNSKGVKAANLKEDYIVAGLGLTSEDTIMYLTEKDGVKKFRNEDLPIYIRPKRGIRVL 741

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
            +                 +E  I  +  +   +  +   +R
Sbjct: 742 PERKRGTEYITFAFNFNANEENIIKAIDTQDMYQEVNVNKYR 783



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 97/258 (37%), Gaps = 12/258 (4%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   + E    + Y ++ +K G ++     +   I+++          D  ++    +  
Sbjct: 496 LDVEQKEVLVEHEYNLWISKDGYLKAI---ESKLISKNDPAVFGRKPNDMWIAAGEVSNL 552

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
             ++L T  G     P+  +   +    +GV      ++   + ++S  +V        +
Sbjct: 553 QHLILVTNKGTYYSIPLYKL-PMSKWRDMGVHVNTIATMDPSEHIVSAFVVKDFAEALQQ 611

Query: 751 RICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
            +   K+ + +R  +   +T+  T       ++          +  K +    ++  G+G
Sbjct: 612 ILITSKNGNIKRIPVKDLETKIFTRAFRIMKLDAVDEIVSASLITSKTRTCGIITRNGYG 671

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            R    D  +   + KG++A ++ +      +VA   +   D I+ +++K  + +    +
Sbjct: 672 VRYHIEDIPVQGTNSKGVKAANLKED----YIVAGLGLTSEDTIMYLTEKDGVKKFRNED 727

Query: 870 IRIASRATKGVVIFSTAK 887
           + I  R  +G+ +    K
Sbjct: 728 LPIYIRPKRGIRVLPERK 745



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 11/216 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR--GISLAKGD-QVISMAIVLHA 744
           E   +    L  +K G  ++   S +         G +   + +A G+   +   I++  
Sbjct: 502 EVLVEHEYNLWISKDGY-LKAIESKLISKNDPAVFGRKPNDMWIAAGEVSNLQHLILVTN 560

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
              Y     Y   MS  R +        T   ++  V   + ++  + L+     IL  S
Sbjct: 561 KGTYYSIPLYKLPMSKWRDMGVHVNTIATMDPSEHIVSAFVVKDFAEALQQ----ILITS 616

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  KR    D   +    +  R   +  ++EI  + A    +      +++  G  +R
Sbjct: 617 KNGNIKRIPVKDL-ETKIFTRAFRIMKLDAVDEI--VSASLITSKTRTCGIITRNGYGVR 673

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             + +I +    +KGV   +  +D  V  +    E 
Sbjct: 674 YHIEDIPVQGTNSKGVKAANLKEDYIVAGLGLTSED 709


>gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 857

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/751 (37%), Positives = 430/751 (57%), Gaps = 41/751 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D+  E+ I  V + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MSKIDKKLDKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+ +NK Y K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++  GN GS+
Sbjct: 61  GQMGLAFNKSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A FLL D+ K TV+F PN+D   QEP VL AR+PN+LVNG  
Sbjct: 121 DGDSAAAMRYTEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAM 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GI+ G AT IP HNL EV+D  +A+IDNP+I  D +++ I+GPDFPTG ++ G+ GIK A
Sbjct: 181 GISAGYATKIPPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TG G I+IR   ++E+ S  +++IV+TEIPY+VNKA ++ +I  L     I DI ++R
Sbjct: 241 LTTGSGKIIIRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+D++G R+ I+LK+GA A  I N L + + LQ  ++ NMVA+  ++P       +LK 
Sbjct: 301 DETDQEGLRIAIDLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKV 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++EVV  R+ Y L +A  R H++ GL    + + EV+  IR S N   ++  + +R
Sbjct: 361 YLEHQKEVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE+Q  AI+ L+L RL+      + +E ++L
Sbjct: 421 --------------------------FGFSELQAEAIVMLQLYRLSTTDIQALLDEKDTL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDM 538
             EI     ILS+   LL  IK EL  V+  L +PRRT +   +    ++++D I  E  
Sbjct: 455 YKEITRLEQILSNERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQT 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V ++  GYVKR  L    A +  G       +++ D +     ++T  ++L F++LG  
Sbjct: 515 YVAITKDGYVKRASLRSVVASKEVG-------LKENDAMLYEEELNTLDTLLLFTNLGQY 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  + NI+  ++GE I  ++   +      +  ++  TK G ++
Sbjct: 568 IYLPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSD---FSIDQKILLTTKQGQMK 624

Query: 659 RNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L+DF     +    AMKL   DE++SV+   Q ++I+  +K G  +RF    + V+ 
Sbjct: 625 QVNLADFEVSRYNRPLRAMKLSKDDELVSVDY-NQLDNIVAISKHGYVLRFDTEELPVYG 683

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              + GV+ ++LA+GD+V        +D  Y
Sbjct: 684 L-TAGGVKSMALAEGDEVAVAFYAKESDDFY 713



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 19/279 (6%)

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN---RSGKIAMKLDSRDE 683
            E+ T        E   +N  ++  T    ++  +            +    +K+D +D 
Sbjct: 449 DEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKD- 507

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                  + E   +  TK G   R  + ++             +   +    +   ++  
Sbjct: 508 -----LISDEQTYVAITKDGYVKRASLRSVVASKEVGLKENDAMLYEEELNTLDTLLLFT 562

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
               Y     Y       R L       + + K ++ +      +   + K     IL  
Sbjct: 563 NLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSDFSIDQK-----ILLT 617

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++G  K+ +  DF +S R  + +RA  +SK +E+ ++      N  D I+ +S  G ++
Sbjct: 618 TKQGQMKQVNLADFEVS-RYNRPLRAMKLSKDDELVSV----DYNQLDNIVAISKHGYVL 672

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           R    E+ +      GV   + A+ + V      +ES+ 
Sbjct: 673 RFDTEELPVYGLTAGGVKSMALAEGDEVAVAFYAKESDD 711


>gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 805

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 265/744 (35%), Positives = 395/744 (53%), Gaps = 54/744 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++DEM+ S+L YA +VI  RA+PD RDG KPV RRILF M QMG+   K +VK
Sbjct: 11  ENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQMSQMGLRPEKGHVK 70

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
              + GEVMGK HPHG+AAIYDAL R+AQ ++LRL L++G GNFGS+D D PAA RYTE 
Sbjct: 71  SQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYTEA 129

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L+ +L +D VDF PNYD    +P VL A +P +LVNG  GIAVGMATNI  H
Sbjct: 130 RLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAMGIAVGMATNIAPH 189

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV     +IDNP+     LM  + GPD P G +I+G  GI+ AY TGRG+   R  
Sbjct: 190 NLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIVGLDGIREAYETGRGAFKTRAK 249

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             +E+ +  ++ +V+TE+PY V    ++EKI E V  K++  I+++ + +DR    R+V+
Sbjct: 250 ITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVSNLTDRHHGVRLVV 309

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G +   +++QL+++T L+  FS+N VAL   +P    L  +L+ +V  R  V+ RR
Sbjct: 310 EVKNGFNPQAVMSQLFKHTPLEDNFSINAVALVDGRPMTLGLKQMLEVYVKHRLSVIERR 369

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L KA DR H++ GL +A+ ++D+V+ IIR S + ++AR  LM              
Sbjct: 370 SQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLMD------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL LRL RLT   R ++  E   L  +I+    IL 
Sbjct: 417 -------------VFELSEIQADHILSLRLRRLTKFSRIELETEQAELLSQIEGLRHILG 463

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--------EDCIVREDMVVTVSH 544
           S   L  +++ EL+ V   L TPRRT ++       +           I    + V ++ 
Sbjct: 464 SEQALRTVVRDELVEVSKRLATPRRTVLLSADPQQVETAGKAAAVPLEIPDAPVQVVLTA 523

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G + RV  +    +    +G         D        +  + V    + G +++ +V 
Sbjct: 524 NGGLIRVDGAEPLEKTES-RGIW-------DTYRVAISATARSQVGLIDASGMLHRVEVV 575

Query: 605 RLPIGSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            LP     A   +    +S +Q  G  +  +     D    +     F TK G ++R + 
Sbjct: 576 DLPEVPRSASNPSFAGAISASQLLGTEVCPVGLIHVDGDDISG----FVTKLGQIKRMRP 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            DF + +      + L   DE+L    C  E +I++ T   Q +R P + IR   GR + 
Sbjct: 632 -DFAKADSFE--TILLTDGDEVLFAAPCPDEAEIVMVTSDAQLLRTPAAKIRP-QGRVAG 687

Query: 723 GVRGISLAKGDQVISMAIVLHADA 746
           GV G+ + +G +++    V    A
Sbjct: 688 GVVGMVIGEGARLLEANFVPSEGA 711



 Score = 46.1 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V++ G  KR      +  +          ++  +E   ++   P  D  +I++V+    L
Sbjct: 620 VTKLGQIKRMRPDFAKADS-----FETILLTDGDE---VLFAAPCPDEAEIVMVTSDAQL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +R P  +IR   R   GVV     +  R+
Sbjct: 672 LRTPAAKIRPQGRVAGGVVGMVIGEGARL 700



 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 82/263 (31%), Gaps = 28/263 (10%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV     G +R +      +    G         D      + T  + + L    G   R
Sbjct: 519 VVLTANGGLIRVDGAEPLEKTESRGIW-------DTYRVAISATARSQVGLIDASGMLHR 571

Query: 708 FPISAIRVFAGRNS----VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +  +       S     G    S   G +V  + ++     D    +  +  +   R 
Sbjct: 572 VEVVDLPEVPRSASNPSFAGAISASQLLGTEVCPVGLIHVDGDDISGFVTKLGQIKRMRP 631

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
             +      T L  D        E         E  I+ V+      RT +   R   R 
Sbjct: 632 DFAKADSFETILLTDG------DEVLFAAPCPDEAEIVMVTSDAQLLRTPAAKIRPQGRV 685

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK-----GTL-IRVPVNEI---RIAS 874
             G+    + +   +  L A F  ++  QI+ V+       G +   V V+++    +  
Sbjct: 686 AGGVVGMVIGEGARL--LEANFVPSEGAQIVTVAAAADGLFGEMQSSVKVSDLEIYPVKG 743

Query: 875 RATKGVVIFSTAKDERVVSVERI 897
           RAT+GV      K E  + + R+
Sbjct: 744 RATQGVRCHRFLKSESELVMARV 766


>gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 751

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 395/794 (49%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD      +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHDNPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLSEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  +  
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L    +++        + N +   T  G+ + F +S +           
Sbjct: 620 AKNKAGKALLSLPGGAKVILPRPVADRELNWLAAVTTEGRLLVFKVSDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----GGAKVILPRPVA 644

Query: 849 DND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +   +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DRELNWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395]
 gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 761

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/802 (31%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 751

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/794 (31%), Positives = 397/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLSEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  +  
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L    +++        ++N +   T  G+ + F +S +           
Sbjct: 620 AKNKAGKALLSLPGGAKVILPRPVADREQNWLAAVTTEGRLLVFKVSDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVITQGATL--------VLQAGKRTLSLRPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----GGAKVILPRPVA 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKVSDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 758

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 384/749 (51%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P   +  LMQR    
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEP---KPLLMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FAISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ +   E    M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTEREEAKAMSEHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFMDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTLPPGANIEHVLMAADDQK------LLMASDVGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I  A      D+++ + ++    +
Sbjct: 673 NKIVSIPAADAAAGKDRLVWLFVLPPQTS 701



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAADDQKLLMASDVGYGFVCTFNDLVAKNRAGKTMITLPENAK----ALPPLEIYGSDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
 gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
          Length = 761

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 255/802 (31%), Positives = 411/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E  +  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERNKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/802 (31%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKANSREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114]
 gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114]
          Length = 765

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 261/732 (35%), Positives = 386/732 (52%), Gaps = 38/732 (5%)

Query: 14  KGITSVSITDEMQNS----YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
                V +++ ++ +    YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +    
Sbjct: 5   SDTKPVDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTG 64

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA R
Sbjct: 65  GFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASR 124

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  +L+ L ++ VDFR NYDG+  EPVVL A++PN+L NG  GIAVGMATN
Sbjct: 125 YTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATN 184

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           IP HN+ E+ D C+ +I  PD   D L++ + GPDFPTG VI+     I  AY TG+G  
Sbjct: 185 IPPHNIAELCDACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGF 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES     
Sbjct: 245 RLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESADDIR 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREE 367
            ++    R    DV++  L+R   L+  FS+NM V ++G  P+  ++  +L+AF+  R+E
Sbjct: 305 MIIEPRSRSVDPDVLMGMLFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+ + L K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W     
Sbjct: 365 VLQRRSTHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LMAEDWGRDHP 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           + L +          S   + L+EVQ  AIL +RL  L  L   ++  E  +L  E    
Sbjct: 422 RALNEA---DYVPPVSTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEERAGL 478

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGL--LDMEDEDCIVREDMVV 540
            D+L +       I ++L + K +         RRT   E     D+  E  I RE + V
Sbjct: 479 EDLLENPGLQWASITEQLRATKKQFGKDWDGGARRTTFSEAAVIEDVPIEAMIDREPITV 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        RA          +  +D D    +F   T   +L F S G  Y 
Sbjct: 539 VCSQMGWV--------RAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYT 590

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP G  +  G+ L  ++ L     I TI+    D        ++ A+  G+    
Sbjct: 591 VSASSLPGG--RGMGEPLRLMIDLPNEAEIVTILTHAPDRK------LLVASSAGDGFVV 642

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             +D +   R+GK  + +      +  +     + + +  +  + + FP+  +       
Sbjct: 643 PEADVVAQTRTGKQVLNVRGDTRAMICKPVNG-DTVAVVGENRKVLVFPLEDLPEMG--R 699

Query: 721 SVGVRGISLAKG 732
             GVR      G
Sbjct: 700 GKGVRLQKYKDG 711



 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              ++ +L  S  G G      D     R+GK +              +   PVN  D +
Sbjct: 624 HAPDRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDTR-----AMICKPVN-GDTV 677

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +V +   ++  P+ ++    R  KGV +      
Sbjct: 678 AVVGENRKVLVFPLEDLPEMGRG-KGVRLQKYKDG 711


>gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
 gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
          Length = 761

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/802 (31%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHNVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
 gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
          Length = 761

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/802 (31%), Positives = 411/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|320528086|ref|ZP_08029251.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
 gi|320131434|gb|EFW23999.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
          Length = 835

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 267/729 (36%), Positives = 404/729 (55%), Gaps = 39/729 (5%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  YA  +I  RA+PD RDGLKPV RRIL+ M   G  W+  Y K A+  G 
Sbjct: 18  LEDIMGAGFGRYAKYIIQERALPDARDGLKPVQRRILYAMYHDGNTWDYAYRKSAKTVGL 77

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG+ ++YDA+ RM+QDW +RL LI+  GN GS+D DP AA RYTE RL K   
Sbjct: 78  VIGNYHPHGDTSVYDAMVRMSQDWKVRLPLIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + +DL K+TV+  PN+D +  EP VL   +P +LVNG  GIA G ATN+P HNL EVVD
Sbjct: 138 VMEEDLDKNTVEMAPNFDDTEHEPTVLPVPFPVMLVNGATGIAAGYATNMPPHNLNEVVD 197

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +  I NP+  L  +M+I+ GPDFPTG ++ G  GI++A+ TG+G IV+R    I    
Sbjct: 198 ATIYRIQNPESALTDVMDILTGPDFPTGGIVQGEAGIRDAFTTGKGRIVVRSKCEI-HEE 256

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
              +QI++TEIPY+V K  +++K+ E+   K I  I D+RDESDR+G R+V+++++   A
Sbjct: 257 KSCQQIIITEIPYEVVKGQLVKKMDEIRVSKDIDGILDVRDESDREGLRIVVDVRKDIDA 316

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           ++ILN  Y+ T LQ  ++ N VA+   +P +  L+G+L AF+AFR+EVV+RR++Y L+K 
Sbjct: 317 NMILNYFYKNTDLQVYYNYNNVAIIDKRPVQVGLLGLLDAFIAFRKEVVLRRSRYELDKM 376

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL  AV+ LDEV+RIIR S +   A+R LM                      
Sbjct: 377 EARCHIIEGLMKAVSILDEVIRIIRASQDKGDAKRNLMNE-------------------- 416

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                     E Q+ AI+ LRL RL+      +R E   L  +I+E   I+ + + L  +
Sbjct: 417 ------FGFDEPQSEAIVSLRLYRLSNTDIITLREEFAELVNQIEETKAIIENENVLHSV 470

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           I +EL +VK E    RRTRI   + ++  +    I  E +VVTVS  GY+KRV +  Y A
Sbjct: 471 IIKELRNVKKEYGQERRTRIEAEVEEINYDKTAMIANERVVVTVSRDGYLKRVSMRSYNA 530

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                 G     ++D D +       T  ++L F+S G      VW++  G  +  G  L
Sbjct: 531 -----VGDQETSIKDGDVLIGTTECDTLDTLLLFTSKGNYASIPVWQIDEGKWKDVGMHL 585

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI-AMK 677
             ++ ++  ++I   +     ++     ++V  +  G +++  ++++     +  + AM 
Sbjct: 586 NKVVRIDGEDKIKNAILIKSFDTY---AWIVTVSSAGQIKKTPVNNWQVERNNKVMTAMN 642

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E++      +   IL+ +K G   RF I  I    G  S GV+ ++L KGD++  
Sbjct: 643 LSKDAEMIHAFIAYRNQQILMVSKDGYSYRFAIEDI-PATGVKSKGVKAMNLGKGDKLAW 701

Query: 738 MAIVLHADA 746
             ++   D 
Sbjct: 702 GCVMNAEDP 710



 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 23/213 (10%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-------- 739
                E  ++  ++ G   R            N+VG +  S+  GD +I           
Sbjct: 503 AMIANERVVVTVSRDGYLKRVS------MRSYNAVGDQETSIKDGDVLIGTTECDTLDTL 556

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++  +  +Y     +       + +     + +     D      + +           +
Sbjct: 557 LLFTSKGNYASIPVWQIDEGKWKDVGMHLNKVVRIDGEDKIKNAILIKSFDTY-----AW 611

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           I+TVS  G  K+T   ++++  R+ K + A ++SK  E   ++  F    N QI++VS  
Sbjct: 612 IVTVSSAGQIKKTPVNNWQV-ERNNKVMTAMNLSKDAE---MIHAFIAYRNQQILMVSKD 667

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           G   R  + +I      +KGV   +  K +++ 
Sbjct: 668 GYSYRFAIEDIPATGVKSKGVKAMNLGKGDKLA 700



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 101/266 (37%), Gaps = 9/266 (3%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           + + +     N   VV  ++ G ++R         N  G     +   D ++    C   
Sbjct: 497 INYDKTAMIANERVVVTVSRDGYLKRVS---MRSYNAVGDQETSIKDGDVLIGTTECDTL 553

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDER 751
           + +LL T  G     P+  I        VG+    +    G+  I  AI++ +   Y   
Sbjct: 554 DTLLLFTSKGNYASIPVWQIDE-GKWKDVGMHLNKVVRIDGEDKIKNAILIKSFDTYAWI 612

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +        ++  ++    E  +    +      +E     +  + Q IL VS+ G+  R
Sbjct: 613 VTVSSAGQIKKTPVNNWQVERNNKVMTAMNLSKDAEMIHAFIAYRNQQILMVSKDGYSYR 672

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            +  D   +    KG++A ++ K +++          ++  ++ +++ G + R+   EI 
Sbjct: 673 FAIEDIPATGVKSKGVKAMNLGKGDKLAW--GCVMNAEDPAVLYMTNVGQMKRIHTEEIV 730

Query: 872 IASRATKGVVI-FSTAKDERVVSVER 896
             +R  KG +I      +  +V++ +
Sbjct: 731 FGNRPMKGNLICKRLKTNPSIVTLAK 756


>gi|325265377|ref|ZP_08132101.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
 gi|324029378|gb|EGB90669.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
          Length = 748

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 265/762 (34%), Positives = 414/762 (54%), Gaps = 30/762 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 5   ESQIIRTEYSEVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY++L  MAQD+    +L++G GNFGS++GD  AA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGKILVDGHGNFGSIEGDGAAAMRYTE 124

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL K+ VDF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+IP
Sbjct: 125 ARLTKFTQEAYLGDLDKNIVDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D   A + N  I    LM  I+GPDFPTG +++ +  + N Y TG+G I IR
Sbjct: 185 THNLSEVLDAVKAYMKNDQISTKQLMRYIKGPDFPTGGIVVNKDDLLNIYETGQGKIKIR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E+  G ++Q+V+TEIPY +        L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 245 GKVEVEEQKGGKKQLVITEIPYTMIGSGIGKFLNDVCGLVESKKTNDIVDISNQSSKEGI 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 305 RIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANDRPETLGLKAIIEHHVDFQFEL 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+   +L K ++R+ V  GL  A   +D ++ I+R S + + AR  L+         K
Sbjct: 365 MTRKYTTMLAKEQERSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVSGVTENIKFK 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I        +      +  +E Q  AILE+RL +L GL  + ++ E       I    
Sbjct: 425 SSI--------SKKMAALLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNISRYE 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++   +  +I +EL S K E    RRT I      + +E  I  +++V  +   GY 
Sbjct: 477 DILNNYDSMANLIMEELDSYKREYGRKRRTAIENAEEAVFEEKKIEEQEVVFLMDRFGYA 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K + ++ Y   +      +            +        +  F+  G +++ KV  LP 
Sbjct: 537 KTIDVTAYERNKEAADSENKY----------VVHCMNTGKICIFTDTGRMHQAKVLDLPY 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ + +  E    ++    D        ++FATK G +++ + ++F Q+
Sbjct: 587 GKFRDKGTPIDNLTNYSSSEEQIVMVC---DAEQMRFAKLLFATKQGMIKKVEGTEF-QV 642

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +    A KL   D ++SV   T+  +I+L TK G  +RFP   I     + +VGVRGI 
Sbjct: 643 AKRTIAATKLQEEDILISVSVVTENQNIVLQTKGGYFLRFPAEEIPEK-KKGAVGVRGIK 701

Query: 729 LAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISG 767
           L K D++ ++ +          Y E+   +  +   RR   G
Sbjct: 702 LQKKDELENVYLFEEGTEKKIVYGEKEVTLNRLRQARRDTLG 743



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  +++G  K+    +F+++ R          +K+ E   L++V  V +
Sbjct: 613 CDAEQMRFAKLLFATKQGMIKKVEGTEFQVAKR------TIAATKLQEEDILISVSVVTE 666

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           N  I+L +  G  +R P  EI    +   GV      K + + +V    E
Sbjct: 667 NQNIVLQTKGGYFLRFPAEEIPEKKKGAVGVRGIKLQKKDELENVYLFEE 716


>gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1]
 gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 771

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/769 (32%), Positives = 371/769 (48%), Gaps = 71/769 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+     D+        S++++   + +YL YAI+V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MTDQPTLFDQVPSAPDGESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+G GNFGS
Sbjct: 61  MNELSLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++   TV+F+PNYDGS +EP +L AR P +L+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IK 238
            GIAVGMAT IP+HNL EV    VA+I NP I    LME+I GPDFP G  I+     I 
Sbjct: 181 SGIAVGMATEIPSHNLTEVAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+ +R    IE  +  + Q V+TE+P  V+   +LE+I EL   K  +    
Sbjct: 241 EMYQSGRGSLKVRARWKIEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKS 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES R     ++   +  + D    +N L   TSL++  S
Sbjct: 301 LTPEQQAQKAAILGLLDAVRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSAS 360

Query: 339 VNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V + G  +P +  L  IL  +++FR E V RRT++ + K  DR H+L G    + N+
Sbjct: 361 LNLVMIGGDGRPRQKNLTDILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V+RIIR S  P+ A  E                                LS+ Q   I
Sbjct: 421 DKVIRIIRESDEPKPALIE-----------------------------AFRLSDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+          RR
Sbjct: 452 LEIRLRQLARLEAIKIQQELAELRNEKSTLQDLLDNPSSMKKLVIKEIEGDAKTYGDARR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I+E       E  ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 T-IIEEAERATFEQKVIDEPVTVIISQKGWV--------RARTGHGHDATQFTFKAGDSL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  ++L F S G VY   V  LP    +  G  +  +L L  G  I      P
Sbjct: 563 YGAFECRTVDNLLAFGSNGRVYTIAVNALPNA--RGDGVPVTTLLELASGSSILHYFAGP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D        ++ A+        K SD     + GK    LD     +      T  + +
Sbjct: 621 AD------TTLLLASDAAAGFIAKASDMFGRVKGGKSFFTLDEGALPLAPTPVPTDASAV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +     GV  + L K +++++   +    
Sbjct: 675 ACVSGNGRLLVFGLDEMKTLSS-GGRGVNLMELEKNEKLVAAQAISQKG 722


>gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
 gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
          Length = 761

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/802 (31%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|23465992|ref|NP_696595.1| DNA topoisomerase IV subunit A [Bifidobacterium longum NCC2705]
 gi|23326709|gb|AAN25231.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 909

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 285/966 (29%), Positives = 455/966 (47%), Gaps = 149/966 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 634 LPALPAAATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 693

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 751

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LA+G +V +  +V      +        + 
Sbjct: 752 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYE 803

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 804 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 844

Query: 819 ISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
              R+  G+R+    K      L  V ++P      +   +  G+ + +P  ++R   R 
Sbjct: 845 TKGRATGGVRSQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RD 895

Query: 877 TKGVVI 882
             GV +
Sbjct: 896 GSGVDL 901


>gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 754

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/796 (31%), Positives = 402/796 (50%), Gaps = 72/796 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V H+E        I+VT +P+QV+ A +LE+IA +++ K  +   +ADLRDESD +   
Sbjct: 250 AVYHVEDGD-----IIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
             V+I +      D ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR 
Sbjct: 305 RIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRALLVEWLEFRV 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P   +  L+ R      
Sbjct: 365 KTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP---KASLIAR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q   IL+ RL +L  L    +R E + L  E  +
Sbjct: 416 --------------------FALSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAK 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  +++ ELL   +     RR+ IVE      + + D +  E + V +S 
Sbjct: 456 LQALLGSEAKLKKLVRTELLKDAETYGDDRRSPIVERAEAKALSEHDLLPNEKVTVVLSE 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        R+ +      +G+  +  D    L    ++   +F  S G  Y     
Sbjct: 516 KGWV--------RSAKGHDIDATGLSYKAGDGFKALAAGRSNQFAVFVDSTGRSYSVPAH 567

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   L+   G     ++  P+D     +   V A+  G     K  D
Sbjct: 568 TLP--SARGQGEPLTGRLTPPPGATFECVL-MPDD-----DGLYVIASDAGYGFVVKGED 619

Query: 665 FIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               N++GK  + L +  ++++       + N +   T  G+ + F IS +         
Sbjct: 620 LQAKNKAGKALLSLPNNAKVIAPRPVADRESNWLASVTTEGRLLVFKISDLPQLGKGKGN 679

Query: 723 GVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GI    +A  ++ ++   VL   A           + A +R +S   +++   K + 
Sbjct: 680 KIIGISGERVASREEYVTDIAVLPEGATL--------VLQAGKRTLSLKADDLEHYKGER 731

Query: 780 SVEGNISEERCQELKL 795
              GN      Q +  
Sbjct: 732 GRRGNKLPRGFQRVDA 747



 Score = 41.4 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 71/209 (33%), Gaps = 24/209 (11%)

Query: 689 TCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               E   ++ ++ G  +  +         + +   G + ++  + +Q      V     
Sbjct: 503 LLPNEKVTVVLSEKGWVRSAKGHDIDATGLSYKAGDGFKALAAGRSNQF--AVFVDSTGR 560

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            Y      +     Q   ++G          +           C  +   +   +  S+ 
Sbjct: 561 SYSVPAHTLPSARGQGEPLTGRLTPPPGATFE-----------CVLMPDDDGLYVIASDA 609

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV--NDNDQIILVSDKGTLIR 864
           G+G      D +  N++GK + +           ++A  PV   +++ +  V+ +G L+ 
Sbjct: 610 GYGFVVKGEDLQAKNKAGKALLSLP-----NNAKVIAPRPVADRESNWLASVTTEGRLLV 664

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVS 893
             ++++    +  KG  I   +  ERV S
Sbjct: 665 FKISDLPQLGKG-KGNKIIGIS-GERVAS 691


>gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
 gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
          Length = 761

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 255/802 (31%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHSLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   +           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGSSI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
 gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
          Length = 768

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 268/741 (36%), Positives = 393/741 (53%), Gaps = 36/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D+E      S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDQDDITDKEPAD--LSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +LD L ++ VDFR NYDG+  EPVVL A++PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLDGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+ + C+ +I  PD   D L++ + GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNIAELCEACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K+I  +AD+
Sbjct: 239 AYRTGKGGFRLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    R   ADV++  L+RY  L+  FS+NM V ++G  P+  ++  +L
Sbjct: 299 RDESADDVRMIIEPRSRSVDADVLMGMLFRYCDLELRFSLNMNVLIDGVTPKVCSMKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R+EV+ RR+++ L K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 QAFLDHRQEVLQRRSQHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W     + L +                L+EVQ  AIL +RL  L  L   ++  E  
Sbjct: 416 AEDWGKDHPRALNEADYVPPVPTDDVT---LTEVQAEAILNMRLRSLRRLEEMELVREQE 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEG--LLDMEDED 531
           +L  E     D+L S       I ++L + K +         RRT   E   + D+  E 
Sbjct: 473 ALMAERAALEDLLESPELQWASITEQLRATKKQFGKDWDGGARRTTFSEATVIEDVPIEA 532

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+V        RA          +  +D D    +F   T   +L 
Sbjct: 533 MIDREPITVVCSEMGWV--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLLV 584

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G  Y      LP G  +  G+ L  ++ L     I TI+      +   N  ++ A
Sbjct: 585 FGSNGRFYTVSASSLPGG--RGMGEPLRLMIDLPNEAEIITIL------THAPNRKLLVA 636

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+      +D +   R+GK  + +   D    +    Q + + +  +  + + FP+ 
Sbjct: 637 SSAGDGFVVPEADVVAQTRTGKQVLNVR-GDTRAMICKAVQGDTVAVVGENRKVLVFPVG 695

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR      G
Sbjct: 696 ELPEMG--RGKGVRLQKYKDG 714



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
               + +L  S  G G      D     R+GK +          I   V        D +
Sbjct: 627 HAPNRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDTRAMICKAV------QGDTV 680

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +V +   ++  PV E+    R  KGV +      
Sbjct: 681 AVVGENRKVLVFPVGELPEMGRG-KGVRLQKYKDG 714


>gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 758

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 271/778 (34%), Positives = 422/778 (54%), Gaps = 61/778 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI    IT+E++ SY+ YA++VI+GRA+PD+RDGLKPV RRI++ M + G  +N  Y K 
Sbjct: 3   GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+A++YDAL RMAQD+ +R  L++G GNFGS+DGDPPAA RYTE R
Sbjct: 63  ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +L+ DL KDTV++ PN+DGS +EP VL A +P +LVNG  GIAVG++T IP HN
Sbjct: 123 LTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  +  + NP+     LM  ++GPDFPTG  I+    +   Y  G+G I +RG +
Sbjct: 183 LGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGRA 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+  G + ++V+ EIPY VNKA ++ +IA+L+R++++  + ++RDES+RQG RVV+EL
Sbjct: 243 KLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+GAS   ILNQLY  T+L++ F++NMVAL    P + TL   + +FV FR+E ++RRT+
Sbjct: 303 KKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRRTR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL+KA  R  V+ G+  A+ N+D V+ IIR +   + A+R LM +              
Sbjct: 363 YLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQ-------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + L+EVQ  A+LE++L  L  + ++ +  EL SL   I E  +IL+S 
Sbjct: 409 ------------IGLTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++LL +I +EL  VK      RRT I        +      E   + +   G ++R    
Sbjct: 457 TKLLEVIAEELKHVKKLFADQRRTLIGFSDQQ-TETVQAAEETFFIELLEYGIIRRSKTQ 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                                 + D   V     V+F ++ G ++    + +P       
Sbjct: 516 T--------------------NLVDFIEVQGSDPVMFLTNFGKIFCISAYEIPESQR--- 552

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G AL  +  +   E++  +           N  ++  ++ G  +R +L D  +I   G  
Sbjct: 553 GVALNALFPMGNDEKVLLL--------GTQNQELIAISEKGKGKRFRL-DVEKIPSRGGY 603

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
              LD  D ++SV       ++++ +  G+ +R  + +I     R + GV+ +   +GD+
Sbjct: 604 YFLLDPGD-MVSVIVPVTSKELVVISAQGKALRLDVESIPERGLR-TGGVKVMRTYEGDR 661

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           V+    +            Y K                  +   +   G +    C E
Sbjct: 662 VVGATCLKQKYIVTMTENAYAKRTDIDEIPKRNRGAAGVFIHKANETTGPVIGVSCNE 719



 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +E+   L  + Q ++ +SEKG GKR      +I +R G            + G +V+V  
Sbjct: 565 DEKVLLLGTQNQELIAISEKGKGKRFRLDVEKIPSRGGYYFLL-------DPGDMVSVIV 617

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
              + +++++S +G  +R+ V  I      T GV +  T + +RVV    +++  IV   
Sbjct: 618 PVTSKELVVISAQGKALRLDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQKYIVTMT 677

Query: 907 EST 909
           E+ 
Sbjct: 678 ENA 680


>gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
 gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
          Length = 762

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/752 (32%), Positives = 396/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  +VL   A 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGAS 703



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 751

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 400/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E  +L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S  +E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKSEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 781

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 302/892 (33%), Positives = 454/892 (50%), Gaps = 130/892 (14%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+   K + K AR+ GEV+GK
Sbjct: 12  VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YDAL RMAQD+S+R  LI GQGN+GSVDGDPPA  RYTE +L K A  LL+
Sbjct: 72  FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PN+D S  EP VL +++PN+L NG  GIAVG+AT+IP HNL EV    V 
Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  NP++  + ++EI++GPDFPTG VI     IK  Y TGRG + ++  +H+EK  G RE
Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVEKVQGGRE 251

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+V+EIPYQVNKA +++KIA+ VR  R+ +I+D+RDESD+ G R+VIELKR A  + +L
Sbjct: 252 QIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKVL 311

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +L++YT L+  F VN+V L   +P+   +  +L+ F+  R  +++RRT++ L KA DR 
Sbjct: 312 KKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDRL 371

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HV+ GL IA+ NLDEV+  IR S + + AR  L  R                        
Sbjct: 372 HVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQAR------------------------ 407

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L+E Q +A+L+LRL RLT L RD +R E   L  +I+    ++ S    + I  +E
Sbjct: 408 --FGLTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEE 465

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
             ++  +   PRRT           E+ I    +VV V   G V  V             
Sbjct: 466 TENLVKKFGDPRRT------FIEGIEEKIEEGSLVVAVLENGKVMPV------------- 506

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                +   E  V D+  V     +   S+ G VY     +   GS        +N    
Sbjct: 507 ---ENMPEGESPVVDILDVPFTEGLFLVSNRGRVYWLAGSQALQGSK-------VNF--K 554

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
              E I                 ++ AT++G +++  L +F    + G   +KL   DE+
Sbjct: 555 ESEEYIVGAFIRERFADR-----LLLATRNGMIKKIPLVEFEYKAQ-GMRIIKLAEDDEV 608

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + +      +DIL+ T+ G+  RF I  I   A   + G +GI +   D+V    ++   
Sbjct: 609 VGIAQSIDMSDILMFTRRGKVARFSIREI-PAATPGTKGAQGIKVEDNDEVAGARVI--- 664

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                                            +  + +I+ V+
Sbjct: 665 -------------------------------------------------REDQPYIIVVT 675

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI- 863
             G  KR    +  + NR  KG+        +    LV + P+ D  ++++ +  G    
Sbjct: 676 VDGKVKRIYQQEIGVRNRGVKGVNVL----GSARERLVDLLPIKDELELLITTKLGRAFY 731

Query: 864 -RVPVNEIRIASRATKGVVIF----STAKDERVVSVERIRESEIVDEAESTE 910
            R+   +I ++ R      +        +++ +  +    E +  +E ES++
Sbjct: 732 DRIRAEDIPLSKRD----RLAKERWKLEEEDEIRRIVIKSEGKGYEEGESSD 779


>gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
          Length = 761

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 257/802 (32%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|322689392|ref|YP_004209126.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460728|dbj|BAJ71348.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 909

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 283/964 (29%), Positives = 451/964 (46%), Gaps = 145/964 (15%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +DR    R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLMV--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 R------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------- 575
           +            E +    +       V  +   A++ G +      ++ ED       
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 576 ------------------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                                          +T +F  ST  +    +S G +    V  
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 606 LPIGSPQAR-----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN 645
           LP     A      G     ++ + +      GER+ T +            +DES    
Sbjct: 634 LPALPAAATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 693

Query: 646 -------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                    +   T++G ++R        ++      + L   DE++       ++ ++ 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVF 751

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +     + F    +R   GR + G+ GI LA+G +V +  +V      +        + 
Sbjct: 752 ISSDSSLLTFEAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYE 803

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             +  L SG    + ++  DS                     L  +E G  K T    + 
Sbjct: 804 EGENGLTSGSGAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYP 844

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R+  G+R+    K      L           +   +  G+ + +P  ++R   R   
Sbjct: 845 TKGRATGGVRSQRFLKGQNTLILAWAGLYP----LHASTSAGSPVELPKPDMR---RDGS 897

Query: 879 GVVI 882
           GV +
Sbjct: 898 GVDL 901


>gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
 gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
          Length = 757

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 387/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    VA+ID P   LD L+  ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V + E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD+Q 
Sbjct: 243 VRMRAVWNKEDNS-----AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDQQN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               VV+        + ++N L+  T L+  + VNM  +    +P+   L+ IL  ++ +
Sbjct: 298 PTRLVVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPQVKGLVEILTEWLTY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL +A  N+D+V+ IIR    P+             
Sbjct: 358 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPKPV----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                +  +S+ Q  AILEL+L  L  L    IR E ++L  E 
Sbjct: 407 ------------------LMQSFGISDTQAEAILELKLRHLAKLEEFKIRGEQDALVKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  ++K+E+ +        RR+ I+E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNILLKKEIQADAQAYGDDRRSPIIERAEAKAMNEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +       G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIEPGGLSYKAGDSFRSAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  P+D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPDDQK------LLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK+ + L    ++L       E+++LL  T  G+ + FP++ +   +    
Sbjct: 613 NDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNMLLSITAAGRILMFPVTDLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++  +VL     
Sbjct: 673 NKIVSIPATQAATGEDKLAWLLVLPPQTS 701



 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +        ++   L  +    +++ 
Sbjct: 591 MAPDDQKLLMASDAGYGFICTFNDLVARNRAGKVMITL----PDDAKVLPPIEIHGEDNM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRILMFPVTDLPQLSK----------GKGNKIVSI 678


>gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv.
           syringae B728a]
          Length = 751

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 401/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 751

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 400/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P+  +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E  +L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAIFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|291539735|emb|CBL12846.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis XB6B4]
          Length = 749

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 267/745 (35%), Positives = 416/745 (55%), Gaps = 29/745 (3%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D  +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+
Sbjct: 1   MEYDMNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            ++K Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  
Sbjct: 61  RYDKPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGA 120

Query: 126 AAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RYTE RLQK      L+DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAV
Sbjct: 121 AAMRYTEARLQKITQEAYLEDLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM T+IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG
Sbjct: 181 GMTTSIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRD 301
            G I IRG   +EK  G ++++V+TEIPY +   N    L  I  LV  K+  DI D+ +
Sbjct: 241 MGKIKIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITN 300

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +S ++G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  
Sbjct: 301 QSSKEGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHH 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V F+ E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L    
Sbjct: 361 VNFQYELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGI 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            +  + K      D +         +  +E QT AILE+RL +L GL  + +  + +   
Sbjct: 421 TDNINFKSEQSKRDAA--------KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETL 472

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I +  DIL SR+ +  +I +EL S K E   PR+T I      + +E  I   D+V  
Sbjct: 473 KNIAKYEDILGSRAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFL 532

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +   GY K V ++ Y   +      +            +        +  F++ G ++  
Sbjct: 533 MDRFGYAKTVDVATYERNKEAANTEN----------RYILTCKNTDKICIFTNKGQMHLL 582

Query: 602 KVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  LP G  + +G  + N+ + N  E     I       ++ ++  V+F TK   ++  
Sbjct: 583 KVLDLPYGKFRDKGTPIDNLSNYNSSEENFVYITNL----AAISHSQVLFGTKSAMLKVV 638

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S+F    R+   A KL+  DE++ V+    E  +++ ++    +R  IS+I     + 
Sbjct: 639 DGSEFDVAKRT-TAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEK-KKG 696

Query: 721 SVGVRGISLAKGDQVISMAIVLHAD 745
           +VGVRG+ L  GD + ++ ++   D
Sbjct: 697 AVGVRGMKLGAGDALAAIYLLNAED 721



 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +    +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + ++
Sbjct: 621 ISHSQVLFGTKSAMLKVVDGSEFDVAKR------TTAATKLNEGDELIFVQALALEETLV 674

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + S+K   +R+ ++ I    +   GV        + + ++  +   ++V
Sbjct: 675 MQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVV 723


>gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 751

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 399/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E  +L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
 gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
          Length = 755

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 SKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSSRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 452 ASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSKGKGNKIISIP 675

Query: 729 LAK---GDQVISMAIVLHADAD 747
            A+   G   ++   VL   + 
Sbjct: 676 AAEAAAGQDGLAHLFVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIE----DESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           ++ ++  G ++  PV+++   S+  KG  I S 
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIISI 674


>gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15]
          Length = 769

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/754 (33%), Positives = 380/754 (50%), Gaps = 64/754 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D    
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAV
Sbjct: 121 FAAMRYTESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+ EV   C+ ++D P+  +D L E I+GPDFPT A +I  R  I+  Y T
Sbjct: 181 GMATDIPPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYET 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R     E       +IVVT++P+QV+   +LE+IA  ++ K++  +ADLRDES
Sbjct: 241 GRGSLRMRARWIRESG-----EIVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDES 295

Query: 304 DRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
           D +    ++ + R    D+  ++  L+  T L+  + VN+  + N  +P    L  IL  
Sbjct: 296 DHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILTE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V+RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R
Sbjct: 356 WLTFRRTTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKP---KAELMAR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS  Q  AILEL+L  L  L    IR E + L
Sbjct: 413 --------------------------FGLSADQAEAILELKLRHLAKLEEMKIRGEQDEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDM 538
             E  E   IL S  RL  +IK E+ +  +     RR+ IV  E      + D I  + +
Sbjct: 447 AAERDELQSILGSEDRLRELIKSEMQADAETFGDDRRSPIVEREEAKAFSEVDLISNDPV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G+V        RA +       G+  +  D  +       +   +F  S G  
Sbjct: 507 TVVLSEKGWV--------RAAKGHDIEPEGLSYKAGDRFSLAARGRNNQQTIFLDSTGRA 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y       P  S + +G+ L   ++   G   + ++          +   +  T  G   
Sbjct: 559 YSLMAHSFP--SARGQGEPLTGRINPPSGASFSGLLM------GDPSRKALLVTDGGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRV 715
              L+D I  NR+GK  + +     I+   T         +   +  G+ + FP+S +  
Sbjct: 611 VTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKTLYLGAVSNEGRMLVFPLSELPE 670

Query: 716 FAGRNSVGVRGISLA----KGDQVISMAIVLHAD 745
            A      +  I  A    + + V+++A+    D
Sbjct: 671 LAKGKGNKIISIPSARVQSREEYVVAVAVFAEDD 704



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 79/227 (34%), Gaps = 26/227 (11%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR---GISLAKGDQVISMAIVLH 743
           V+  + +   ++ ++ G         I         G R           Q I +     
Sbjct: 498 VDLISNDPVTVVLSEKGWVRAAKGHDIEPEGLSYKAGDRFSLAARGRNNQQTIFLD---- 553

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                      M H     R          +  + +S  G +  +  ++        L V
Sbjct: 554 ---STGRAYSLMAHSFPSARGQGEPLTGRINPPSGASFSGLLMGDPSRKA-------LLV 603

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+G  TS  D    NR+GK +    V K   I   + +        +  VS++G ++
Sbjct: 604 TDGGYGFVTSLNDMISKNRNGKAV--VSVPKGARIMPPLTIPTTEKTLYLGAVSNEGRML 661

Query: 864 RVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIVD 904
             P++E+   ++  KG  I S       +++E VV+V    E + ++
Sbjct: 662 VFPLSELPELAKG-KGNKIISIPSARVQSREEYVVAVAVFAEDDQLE 707


>gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
 gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
          Length = 761

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/752 (32%), Positives = 395/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+ +Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTGIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  +VL   A 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGAS 703



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
 gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
          Length = 761

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 256/802 (31%), Positives = 412/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELER 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 751

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 401/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187]
 gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187]
          Length = 759

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 241/753 (32%), Positives = 402/753 (53%), Gaps = 63/753 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E   +G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSDAELSLEGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D    
Sbjct: 61  SALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL + +  LL +L + TV+++PN+DG+ QEP +L AR P++L+NG  GIAV
Sbjct: 121 FAAMRYTEARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+ EV   C+ +++ PD  +  L+E ++GPD+PT A +I  R+ I+  Y +
Sbjct: 181 GMATDIPPHNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYES 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+GSI  R V H+E        IV+T +P+Q + A ++E+IA  ++ K++  ++DLRDES
Sbjct: 241 GKGSIKARAVYHMEDGD-----IVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDES 295

Query: 304 DRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
           D +     V+I        + ++  L+  T L+  + VN+  L   ++P+   L+ IL  
Sbjct: 296 DHENPTRLVIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILTE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++AFR E V RR ++ L+K  +R H+L GL IA  N+DEV+ IIR    P   ++ELM+R
Sbjct: 356 WLAFRRETVRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIRNEDEP---KKELMRR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q  AIL+L+L  L  L    IR E + L
Sbjct: 413 --------------------------FGLSEIQADAILDLKLRHLAKLEEFKIRGEQDEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E  +   +L S  +L  ++K+E+ +  ++    RR+ +VE      + +++    E +
Sbjct: 447 AKERDQLEALLGSARKLGNLLKKEIQADAEKYGDDRRSPLVERQEAKQLTEKELTPSELV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V VS +G+V        RA +       G+  +  D         ++   +F ++LG  
Sbjct: 507 TVVVSEMGWV--------RAAKGHDVDVQGLNYKAGDGYLVSAQGRSNQQTVFMTNLGRT 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  +   LP  S + +G+ L   LS   GE+   ++   EDE        +  +  G   
Sbjct: 559 YSLEAHTLP--SARGQGEPLTGKLSFTAGEQTRYVLLGNEDER------YLICSDAGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRV 715
             + +D I  N++GK  + L    ++L  +   +++D    L+ +  G+ + FP++ +  
Sbjct: 611 LCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDDALCLVISNEGRMLLFPLNTLPQ 670

Query: 716 FAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
                   + GI    +A  ++ ++   V+ AD
Sbjct: 671 LGKGKGNKLIGIPADKVASREEFVTHVAVVKAD 703



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 15/195 (7%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G++   GD  +  A                 +      L S   +    
Sbjct: 517 RAAKGHDVDVQGLNYKAGDGYLVSAQGRSNQQTVFMTNLGRTYSLEAHTLPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G   + R   L  +++  L  S+ G+G      D    N++GK +       
Sbjct: 577 TGKLSFTAG--EQTRYVLLGNEDERYLICSDAGYGFLCEYNDLISKNKNGKALLTLPEGA 634

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ 888
                 L A    +D+   +++S++G ++  P+N +    +  KG  +     D      
Sbjct: 635 QVLPPQLTAKQ--DDDALCLVISNEGRMLLFPLNTLPQLGKG-KGNKLIGIPADKVASRE 691

Query: 889 ERVVSVERIRESEIV 903
           E V  V  ++  + V
Sbjct: 692 EFVTHVAVVKADQAV 706


>gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 751

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 401/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLSSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|160878453|ref|YP_001557421.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427119|gb|ABX40682.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 748

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 260/771 (33%), Positives = 427/771 (55%), Gaps = 34/771 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + I  +  ++EM+ S+  YA++VI+ RAIPD+RDGLKPV RRIL+ M+++G++  K 
Sbjct: 3   KEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+ MGKYHPHG+++IYDAL  M + +S+++ L++G GNFGS+DGD  AA RY
Sbjct: 63  HRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LLD L K  V+F PN+D S +EP VL A  PN+L+NG  GIAVGMATN+
Sbjct: 123 TEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV++G +A IDNPDI  + LM+ I GPDFPTG  I+    I+N Y TG G + +
Sbjct: 183 PPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSEDIRNIYETGEGRLKV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE +   R+ IV+TEIPY V  NK  ++E + +L+++K   +I D+RDES ++G 
Sbjct: 243 RAKTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIE+K+    + +LN LY+ TS++  + VN++A+   +P  F L  ++  FV+F+EE+
Sbjct: 303 RVVIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFKLKNLVGEFVSFQEEL 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             +  ++LL+KA  R  ++ GL  A   +D ++ I+R S + + A+  L+  +    + K
Sbjct: 363 YTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEINFK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  +E Q  AIL + L++L GL    +  E  SL   I++  
Sbjct: 423 TEASR--------KKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQ 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL ++  L  +IK  L   K + + PR T +    +  E  + +  ED+ + +   GY 
Sbjct: 475 SILGNKKELFKVIKSNLKEYKKQFNVPRHTVLANMEIA-EYVEEVKVEDIYILIDKFGYT 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V  +            S   ++D      +  +     +  F++ G +Y+ K  ++P 
Sbjct: 534 KSVDNTSISR-------VSEDNLKD---FVHIVKMKNTDRLCLFTAQGNMYQVKAEKIPK 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + N+  +++ E I   + F +   S     ++F TK+G ++     +F   
Sbjct: 584 CKIKDKGTLIHNLCKVDK-EEILLYIAFEDLFESQ----LLFTTKNGFIKLVSGIEFET- 637

Query: 669 NRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           NR+   A KL+  D ++SV           ++ ++L T+    + FP++ +     + S 
Sbjct: 638 NRAMISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSEL-KKTSK 696

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           GV+GI+L K D+V    + L     ++ +   +     + R  +   ++ +
Sbjct: 697 GVKGITLEKKDKVAFATVALPETEFFEYQGKELSAKKVRNRKRAAKGQKAS 747



 Score = 45.3 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV------NDN 850
           E  +L  ++ GF K  S  +F  +NR+         +K+ E   +V+V  +      N +
Sbjct: 615 ESQLLFTTKNGFIKLVSGIEF-ETNRA-----MISATKLEEADHVVSVLCLSAHTISNPD 668

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESE 901
            ++IL+++    +  P+ E+    + +KGV   +  K ++V      + E+E
Sbjct: 669 SKVILLTEDSLSLGFPLTEVSELKKTSKGVKGITLEKKDKVAFATVALPETE 720


>gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
 gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
          Length = 752

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 246/750 (32%), Positives = 380/750 (50%), Gaps = 62/750 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +L   TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           +IP HN  EV    VA++D P + LD +M  +  PDFPT A I+  R  I+  Y  GRGS
Sbjct: 183 DIPPHNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  +      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWEKEDGN-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + VN+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKGLVDILNEWIVY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FNLSDTQAEAILELKLRHLAKLEEMKIRGEQDELIKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            E   IL S  +L  +IK+E+ +        RR+ +   E    + + + +  E + V +
Sbjct: 449 DELQSILGSERKLNTLIKKEIQADAKAYGDERRSPLREREEAKALSEHEILPSEPITVVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      S +  +  D         T+  V+F  + G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIEPSNLNYKAGDSFKGAARGKTNQPVVFLDTTGRSYSVD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   LSL  G  +  ++   +++        + A+  G       
Sbjct: 561 PLELP--SARSQGEPLTGRLSLPPGATVEHVLMAQDEQK------YLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +D +  N++GK  + L    +IL+       QE+ +L  TK G+ + FP++ +   +   
Sbjct: 613 NDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLAITKAGRMLMFPVADLPQLSKGK 672

Query: 721 SVGVR---GISLAKGDQVISMAIVLHADAD 747
              +    G   A G+ ++   +VL A A 
Sbjct: 673 GNKIINITGAQAASGEDLLVWLLVLPAQAS 702


>gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
 gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
          Length = 761

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 247/752 (32%), Positives = 396/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  +VL   A 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGAS 703



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 751

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 399/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E  +L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGAAFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|153813001|ref|ZP_01965669.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
 gi|149830948|gb|EDM86038.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
          Length = 748

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/768 (32%), Positives = 411/768 (53%), Gaps = 30/768 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K    +   DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQDVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D   A + +  I +  LM  I+GPDFPTG +++ +  +   Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVKAYMKDNTISVKGLMRYIKGPDFPTGGIVVNKDDLHKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG   +EK  G R+Q+V+TEIPY +   N    L  +A L+  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEVEKLKGGRKQLVITEIPYTMLGANIGKFLNDVASLIETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+    + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F 
Sbjct: 302 EGIRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQIIEYHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL+K  ++  V  GL  A   +D ++ I+R S N E  ++ L++      
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +  +   +  +E Q  AIL++RL +L GL  + ++ E       I 
Sbjct: 422 KFK--------SKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEHEETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL +   +  +I +++ ++K E    RRT I      + +E  +   ++   +   
Sbjct: 474 LYKDILDNYDSMAAVIIKDMDAIKKEYGRKRRTAIENAEEAVYEEKKMEEMEVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K +  + Y   +      +            +F       +  F+  G ++  K   
Sbjct: 534 GYMKLIDKNAYERNKEAVHNENKY----------VFNCMNTDKICIFTDTGKMHTIKAVD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+G  + +G  + N+ + +   ER+  + P  +  S      ++F TK    +  + ++
Sbjct: 584 IPLGRFRDKGTPVDNLSNYDSSQERMLYVAPVGQLRSDR----LLFVTKTSMCKLVEGAE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    + KL   DE++ + + ++   I+L +  G  +RF    +     + ++GV
Sbjct: 640 FD-VAKRTIASTKLADEDELIFIGSASEMEQIVLQSHGGCFLRFLAQEVSTM-KKTALGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           RG+ LA  D +   A +L    +Y       ++   + RL   DT+ I
Sbjct: 698 RGMKLADDDYL-EHAYLLAGHQEYTISYHDKEYALNKVRLAKRDTKGI 744



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +L+   +L V++    K     +F ++ R          +K+ +   L+ +   ++ +QI
Sbjct: 617 QLRSDRLLFVTKTSMCKLVEGAEFDVAKR------TIASTKLADEDELIFIGSASEMEQI 670

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L S  G  +R    E+    +   GV     A D+ +
Sbjct: 671 VLQSHGGCFLRFLAQEVSTMKKTALGVRGMKLADDDYL 708


>gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
 gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  519 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/754 (33%), Positives = 383/754 (50%), Gaps = 64/754 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D    
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL   A  LL +LG+ TVD+ PN+DG+ +EP VL AR P+VL+NG  GIAV
Sbjct: 121 FAAMRYTESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+ EV   C+ ++D PD  +D L E I+GPDFPT A +I  R  ++  Y T
Sbjct: 181 GMATDIPPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYET 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R     E       ++V+T++P+QV+   +LE+IA+ ++ K++  +ADLRDES
Sbjct: 241 GRGSLRMRARWIRENG-----EVVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDES 295

Query: 304 DRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
           D +    ++ + R    D+  ++  L+  T L+  + VN+  + N  +P    L  IL  
Sbjct: 296 DHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILTE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++AFR+  V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R
Sbjct: 356 WLAFRKTTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKP---KAELMAR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS  Q  AILEL+L  L  L    IR E + L
Sbjct: 413 --------------------------FGLSAEQAEAILELKLRHLAKLEEMKIRGEQDEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDM 538
             E  E   IL S  RL  +IK EL    +     RR+ IV  E      + D +  + +
Sbjct: 447 SAERDELQAILGSEDRLRELIKTELEQDAETFGDDRRSPIVEREEARAFSETDLVSNDPV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G+V        RA +      +G+  +  D          +   +F  S G  
Sbjct: 507 TVVLSDKGWV--------RAAKGHDIDPAGLSYKSGDRFALAAKGRNNQQAIFLDSTGRA 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      LP  S + +G+ L   ++   G   + ++    +         +  T  G   
Sbjct: 559 YSLMAHSLP--SARGQGEPLTGRINPPSGATFSGLLMGNPERK------TLLVTDGGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRV 715
              L+D I  NR+GK  + +     I+      +      +   +  G+ + FP+S +  
Sbjct: 611 VTSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETASTLYLAAISNEGRMLVFPLSELPE 670

Query: 716 FAGRNSVGVRGISLA----KGDQVISMAIVLHAD 745
            A      +  I  A    + + V+++A+    D
Sbjct: 671 LAKGKGNKIISIPSARVQNREEYVVAVAVFGEED 704



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 9/118 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+  L V++ G+G  TS  D    NR+GK +    V K   I   V +        
Sbjct: 593 MGNPERKTLLVTDGGYGFVTSLNDMISKNRAGKAV--VSVPKGARIMPPVMIPETASTLY 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIVD 904
           +  +S++G ++  P++E+   ++  KG  I S        ++E VV+V    E + ++
Sbjct: 651 LAAISNEGRMLVFPLSELPELAKG-KGNKIISIPSARVQNREEYVVAVAVFGEEDQLE 707


>gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 751

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/794 (31%), Positives = 400/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR K+ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FGLTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S ++L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSEAKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|291535204|emb|CBL08316.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis M50/1]
          Length = 745

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 265/739 (35%), Positives = 413/739 (55%), Gaps = 29/739 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 3   QEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  AA RYT
Sbjct: 63  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRYT 122

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RLQK      L DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAVGM T+I
Sbjct: 123 EARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTSI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG G I I
Sbjct: 183 PPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTGMGKIKI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +EK  G ++++V+TEIPY +   N    L  I  LV  K+  DI D+ ++S ++G
Sbjct: 243 RGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  V F+ E
Sbjct: 303 IRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHHVNFQYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L     +  + 
Sbjct: 363 LATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITDNINF 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K      D +         +  +E QT AILE+RL +L GL  + +  + +     I + 
Sbjct: 423 KSEQSKRDAA--------KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAKY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL SR+ +  +I +EL S K E   PR+T I      + +E  I   D+V  +   GY
Sbjct: 475 EDILGSRAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFLMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +      +            +        +  F++ G ++  KV  LP
Sbjct: 535 AKTVDVATYERNKEAANTEN----------RYILTCKNTDKICIFTNKGQMHLLKVLDLP 584

Query: 608 IGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  + +G  + N+ + N  E     I       ++ ++  V+F TK   ++    S+F 
Sbjct: 585 YGKFRDKGTPIDNLSNYNSSEENFVYITNL----AAISHSQVLFGTKSAMLKVVDGSEFD 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + +    A KL+  DE++ V+    E  +++ ++    +R  IS+I     + +VGVRG
Sbjct: 641 -VAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEK-KKGAVGVRG 698

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L  GD + ++ ++   D
Sbjct: 699 MKLGAGDALAAIYLLNAED 717



 Score = 46.1 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +    +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + ++
Sbjct: 617 ISHSQVLFGTKSAMLKVVDGSEFDVAKR------TTAATKLNEGDELIFVQALALEETLV 670

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + S+K   +R+ ++ I    +   GV        + + ++  +   ++V
Sbjct: 671 MQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVV 719


>gi|73916132|gb|AAZ92934.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 639

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 261/718 (36%), Positives = 400/718 (55%), Gaps = 85/718 (11%)

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  
Sbjct: 1   NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSR 60

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE
Sbjct: 61  TEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIE 120

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT
Sbjct: 121 VKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRT 180

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +             
Sbjct: 181 RFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------- 227

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL+ 
Sbjct: 228 -------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAK 274

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  IIK EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR+ 
Sbjct: 275 PERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLD 334

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     
Sbjct: 335 QDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRT 394

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G
Sbjct: 395 AKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNG 452

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +G
Sbjct: 453 LKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREG 511

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+  +++   D                                               
Sbjct: 512 DTVVGASLITDQD----------------------------------------------- 524

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  I+T    G  KRT + ++    R GKG++   +++ N  G L  +  V  ++ 
Sbjct: 525 ----EVLIITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDED 576

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 577 LMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 634


>gi|257414210|ref|ZP_04745589.2| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257200859|gb|EEU99143.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
          Length = 749

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 267/745 (35%), Positives = 414/745 (55%), Gaps = 29/745 (3%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D  +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+
Sbjct: 1   MEYDMNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            ++K Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  
Sbjct: 61  RYDKPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGA 120

Query: 126 AAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RYTE RLQK      L DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAV
Sbjct: 121 AAMRYTEARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM T+IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG
Sbjct: 181 GMTTSIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRD 301
            G I IRG   +EK  G ++++V+TEIPY +   N    L  I  LV  K+  DI D+ +
Sbjct: 241 MGKIKIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITN 300

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +S ++G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  
Sbjct: 301 QSSKEGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHH 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V F+ E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L    
Sbjct: 361 VNFQYELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGI 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            +  + K      D +         +  +E QT AILE+RL +L GL  + +  + +   
Sbjct: 421 TDNINFKSEQSKRDAA--------KLRFTERQTTAILEMRLQKLIGLELEALLKDHDETL 472

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I +  DIL SR+ +  +I +EL S K E   PR+T I      + +E  I   D+V  
Sbjct: 473 KNISKYEDILGSRAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFL 532

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +   GY K V ++ Y   +      +            +        +  F++ G ++  
Sbjct: 533 MDRFGYAKTVDVATYERNKEAANTEN----------RYILTCKNTDKICIFTNKGQMHLL 582

Query: 602 KVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  LP G  + +G  + N+ + N  E     I       ++ +   V+F TK   ++  
Sbjct: 583 KVLDLPYGKFRDKGTPIDNLSNYNSSEENFVYITNL----AAISRSQVLFGTKSAMLKVV 638

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S+F    R+   A KL+  DE++ V+    E  +++ ++    +R  IS+I     + 
Sbjct: 639 DGSEFDVAKRT-TAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEK-KKG 696

Query: 721 SVGVRGISLAKGDQVISMAIVLHAD 745
           +VGVRG+ L  GD + ++ ++   D
Sbjct: 697 AVGVRGMKLGAGDALAAIYLLNAED 721



 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +    +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + ++
Sbjct: 621 ISRSQVLFGTKSAMLKVVDGSEFDVAKR------TTAATKLNEGDELIFVQALALEETLV 674

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + S+K   +R+ ++ I    +   GV        + + ++  +   ++V
Sbjct: 675 MQSEKDFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVV 723


>gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 751

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/794 (31%), Positives = 399/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLSEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FGLTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 752

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV +  + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVANAAITLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
           + E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 NKEDG-----AVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDKLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D    E + + +S  G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAFGDDRRSPLHEREEARAMNEHDMQPSEPVTIVLSQSGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKAGDSFKAAVKGKSNQPVAFIDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFICTFNDLVSRN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       + + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALISLPDNAHVMPPLVIENDSDMLLAITAAGRMLMFPVSDLPALSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKG+  ++   +L   + 
Sbjct: 676 SAEAAKGEDGLAHLFILPPQST 697



 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +    +S  +    +  +   ND+D 
Sbjct: 587 MESDDQKLLMASDAGYGFICTFNDLVSRNRAGKAL----ISLPDNAHVMPPLVIENDSDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITAAGRMLMFPVSDLPALSKG-KGNKIINIPSAE 678


>gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 752

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 SKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 452 ASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSKGKGNKIISIP 675

Query: 729 LAK---GDQVISMAIVLHADAD 747
            A+   G   ++   VL   + 
Sbjct: 676 AAEAAAGQDGLAHLFVLPPQST 697



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIE----DESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           ++ ++  G ++  PV+++   S+  KG  I S 
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIISI 674


>gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 751

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/794 (31%), Positives = 399/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  +  
Sbjct: 414 ------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7]
          Length = 751

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/794 (31%), Positives = 401/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FDLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS S+L  +++ EL++  +     RR+ IV       + + + +  + + V +S  G
Sbjct: 456 ALLSSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTQPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
 gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
          Length = 799

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 270/731 (36%), Positives = 444/731 (60%), Gaps = 44/731 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++ I +++I DEM++SY  Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G  ++K 
Sbjct: 2   KEKEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR LLI+GQGNFGS+D DPPAA RY
Sbjct: 62  YRKSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+
Sbjct: 122 TEIKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E ++   + ID   I ++ LM+ I+ PDFPTG +I G  G+K  + TGRG I++
Sbjct: 182 PPHNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIYGYEGVKKYFLTGRGKILL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H E+   +R  ++V EIPYQ+NK  ++ K  +LV+E ++  ++++RDESDR G R+
Sbjct: 242 RSKVHFEEI-NNRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  +K+      +LN L++ TSL++ F VN +AL   KP    L  ++K FV  R +V++
Sbjct: 301 VYNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGKPTILNLKDLIKHFVNHRHDVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY LN+A++RAH++ G  I + NL+ V+ +I+ S +   A+++++ +          
Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILIK---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q ++ILEL+L  LT L    I+ E   +  +I     I
Sbjct: 411 ----------------YNLSEIQVKSILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +S++     IIK+EL  VK +    RRT I    L+ E          V+T+++ GY+K+
Sbjct: 455 ISNKFLQKKIIKKELNIVKTKYGDLRRTEINYLGLENEVY----NNKFVITITNTGYIKK 510

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L+ Y+       G +    ++   +  + I   +  +LFF   G  +  KV+++P   
Sbjct: 511 NYLNKYK------IGVTYKCKKNN--LEKIIIAKNYQDILFFYENGKYFLLKVFKIPEVL 562

Query: 611 PQARGKALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            +++G+A+ N++ +N+ E+I  + ++    D+   N  YV+  TK+G +++  L   IQ 
Sbjct: 563 KKSKGQAIQNLIKINKKEKICSSILIEKNNDKKYLNKNYVILITKNGIIKKTTL---IQY 619

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++ K  +K+ ++D I+  +   + ++I +  K G+ ++F  S I+  A +N + +  I+
Sbjct: 620 YKNPKNLIKIINKDYIIYAKLTNENSEIFIAEKSGKIIKFDESTIKKIALKNDLYIICIN 679

Query: 729 LAKGDQVISMA 739
             K + ++ ++
Sbjct: 680 DLKKEYILVVS 690


>gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
 gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
          Length = 761

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 255/802 (31%), Positives = 413/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV +  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D D+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DKDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586]
 gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586]
          Length = 761

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 249/752 (33%), Positives = 397/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV +  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         +    +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSSQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  +VL   A 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGAS 703



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D D+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DKDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
 gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
          Length = 761

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 246/752 (32%), Positives = 395/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV +  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+ +Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FDLTGIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  +VL   A 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGAS 703



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|159029636|emb|CAO87714.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 884

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 287/962 (29%), Positives = 458/962 (47%), Gaps = 156/962 (16%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D      I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAKQL---DFLASGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++Y+AL RM QD+S R  L+ G GNFGS+
Sbjct: 58  HELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL       +L  + +  V+F  N+D S QEPVVL A+ P +++NG 
Sbjct: 118 DNDPPAAMRYTETRLAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGEVV+G +A+IDNPD+  + L+EII GPDFPTG  IL  TGI+ 
Sbjct: 178 SGIAVGMATNIPPHNLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDTGIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKT------SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RGV+  E          +R  IVVTE+P+QVNKAA +EKIAELV   ++
Sbjct: 238 AYRTGRGIIPVRGVAKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKL 297

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IAD+RDES+R+G RVVIELKR +    +L  LY+ T+LQ+ F   ++AL   +P + +
Sbjct: 298 EGIADIRDESNREGIRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQPRQLS 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+ F+ FRE  + R+    L +A DR H++ GL +A+ N+D VV I++ +P+  TA
Sbjct: 358 LKQVLQEFLRFRETTLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +                                + +S+ Q  +IL + L RLTGL R  +
Sbjct: 418 KYRFQAE--------------------------LGISDPQADSILAMPLRRLTGLERQKL 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI------------- 520
             E   L  +I++   +L +R   L  +K+EL S+K +    RRT+I             
Sbjct: 452 ETEATELQTKIQQLETLLHNRQEFLKSLKKELRSLKKKFADSRRTKIRTGKSGDRRQETE 511

Query: 521 ----------------VEGLLDMEDEDCIVREDMVVTVSHLGYVKR-------------- 550
                            +   D + +    ++D VV        KR              
Sbjct: 512 GKKLDSVVKKQETGERRQETGDGKQQAAGKKQDSVVKKQETADGKREAEVKKQENKVKKK 571

Query: 551 ------VPLSVYRAQR--------RGGKGRSGVVMRDE-----DFVTDLFIVSTHTSVLF 591
                   LS++  Q            + +      +E     D +     +    + L 
Sbjct: 572 SESENAPSLSLFTPQEPPENAILLLDAEDKISWTTPEERVPDRDLIIYQQAIEKQENFLV 631

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
                  Y   +  +P    Q     + ++L+    +    ++          N  ++  
Sbjct: 632 ILDNAKAYPISILEVPPQGNQP--VLISSLLTKTAQKESEAVLNQFFLTKPQKNQELLLL 689

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI- 710
           ++ G ++R  +++   +   G   MKL   D + +     +  D+ + T  G+ +R+P+ 
Sbjct: 690 SQQGRIKRLSINELEGVGSRGLSLMKLKEDDRLYAAIFTHEGLDLAIATSSGRVLRYPVR 749

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +    G+++ G+  + L  G+ +     + H +                         
Sbjct: 750 EELLPIMGKSAQGLAILRLRYGEHLAGCVSLPHREN------------------------ 785

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        +L +S  G+GKR +  + R+S     G  A 
Sbjct: 786 -----------------------------LLLISGLGYGKRLAIENLRLSQLGDLGSPAL 816

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
               +N+  +L A+        ++L +++   + + V  + +  +   G  +      E+
Sbjct: 817 QF--VNKQDSLAAMVAARAGSIVLLSTNQERKLPLEVETVTVTGKDGTGSQLVKLNPTEK 874

Query: 891 VV 892
           ++
Sbjct: 875 II 876



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++  +  ++L     Y   I  +     Q  LIS    +    ++++     +  +    
Sbjct: 624 EKQENFLVILDNAKAYPISILEVPPQGNQPVLISSLLTKTAQKESEA-----VLNQFFLT 678

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              K Q +L +S++G  KR S  +  +     +G+    + + +    L A    ++   
Sbjct: 679 KPQKNQELLLLSQQGRIKRLSINE--LEGVGSRGLSLMKLKEDDR---LYAAIFTHEGLD 733

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + + +  G ++R PV E  + I  ++ +G+ I      E +     +   E
Sbjct: 734 LAIATSSGRVLRYPVREELLPIMGKSAQGLAILRLRYGEHLAGCVSLPHRE 784



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 82/205 (40%), Gaps = 17/205 (8%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G +KR+ ++       G +G S + ++++D +           +   +S G V + 
Sbjct: 689 LSQQGRIKRLSINELE--GVGSRGLSLMKLKEDDRLYAAIFTHEGLDLAIATSSGRVLRY 746

Query: 602 KVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            V    LPI    A+G A+   L L  GE +   +  P  E+      ++  +  G  +R
Sbjct: 747 PVREELLPIMGKSAQGLAI---LRLRYGEHLAGCVSLPHREN------LLLISGLGYGKR 797

Query: 660 NKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             + +          +  L   + +D + ++      + +LL+T   + +   +      
Sbjct: 798 LAIENLRLSQLGDLGSPALQFVNKQDSLAAMVAARAGSIVLLSTNQERKLPLEV-ETVTV 856

Query: 717 AGRNSVGVRGISLAKGDQVISMAIV 741
            G++  G + + L   +++I   ++
Sbjct: 857 TGKDGTGSQLVKLNPTEKIIKAQLL 881


>gi|291519485|emb|CBK74706.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 746

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 257/740 (34%), Positives = 405/740 (54%), Gaps = 30/740 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ S++ Y+++VIL RA+PD+RDGLKPV RR L+ M ++ V++NK Y K
Sbjct: 3   QEIIRTEYSEIMQKSFIDYSMSVILARAVPDVRDGLKPVQRRTLYDMYELKVDYNKPYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+AL  M+QD+   L L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYEALVVMSQDFKKSLPLVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL K      L DL K+ VDF PNYD + +EP VL  R PN+L+NG  GIAVGM T+IP 
Sbjct: 123 RLAKVAQEVYLGDLDKNVVDFIPNYDETEKEPEVLPVRVPNLLINGSDGIAVGMVTSIPQ 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVDG +A + NPDI    +M+II GPDFPTG ++  +  +   Y+TG G I IRG
Sbjct: 183 HNLGEVVDGVIAYMKNPDISTPEMMQIIPGPDFPTGGIVTNKDDLLEIYSTGLGKIKIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPY---QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            + IEK  G +EQIV+TEIPY     N    L  I  LV  K+  DI D+ ++S  +  R
Sbjct: 243 KAEIEKLKGGKEQIVITEIPYPMIGANIGKFLNDIYSLVETKKTNDIVDISNQSKGEQMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++EL++GA A  +LN LY+ T L+  F VNM+A+   KPE   ++ I++  V F+ E+ 
Sbjct: 303 IIVELRKGADAQNVLNLLYKKTRLEDTFGVNMLAVADGKPETLGIVPIIRHHVDFQYELC 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+  +LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K 
Sbjct: 363 TRKYNHLLGKEQEKKEIQEGLIKACDVIDLIIEILRGSKDVKQAKACLVDGITAGIKFKS 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                D           ++ +E Q +AIL++RL RL GL  + +R +      +I +   
Sbjct: 423 QKSKADAEQ--------LHFTERQAQAILDMRLHRLIGLEIEALRGDYAETLDKIAKYTK 474

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+ +  +I ++L ++K E    RRT I      + +E  I   D+ V +    Y +
Sbjct: 475 ILGSRAEMAKVIIKDLQAIKKEYARERRTVIDNVEEAVVEEKPIEVIDVAVLIDRFAYAR 534

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V +  Y   +   +  S            +        +  F+  G ++  KV  LP G
Sbjct: 535 VVDMPTYERNKEAAETES----------KKIVFCKNTDKICLFTEKGDMHTIKVLSLPFG 584

Query: 610 SPQARGKALINILSLNQGERITTI---MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             + +G+ +    +  +G +I      + F +   +  +  ++F TK   ++    S+F 
Sbjct: 585 KFRDKGQPID---TAEKGSKIDLTKENLIFADAMENIKDKKLIFGTKQAMIKLVDGSEFD 641

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              ++   A KL+ +DE++ V+     + +++ +     +R           + + GVRG
Sbjct: 642 VSRKT-IAATKLNDKDEVICVKIINPGDTVVMQSAKDMFLRI-EGDTIPEKKKTAAGVRG 699

Query: 727 ISLAKGDQVISMAIVLHADA 746
           I LAKGD++ ++ ++   D+
Sbjct: 700 IKLAKGDELTNIYVLAEGDS 719



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +K++ ++  +++   K     +F +S       +    +K+N+   ++ V  +N  D ++
Sbjct: 618 IKDKKLIFGTKQAMIKLVDGSEFDVSR------KTIAATKLNDKDEVICVKIINPGDTVV 671

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + S K   +R+  + I    +   GV     AK + + ++  + E + ++
Sbjct: 672 MQSAKDMFLRIEGDTIPEKKKTAAGVRGIKLAKGDELTNIYVLAEGDSIE 721


>gi|283768326|ref|ZP_06341238.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
 gi|283104718|gb|EFC06090.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
          Length = 830

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 259/728 (35%), Positives = 406/728 (55%), Gaps = 40/728 (5%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  YA  +I  RA+PD+RDGLKPV RRIL+ M   G   +K Y K A+  G 
Sbjct: 18  LEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGL 77

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+G YHPHG++++YDA+ RM+QDW +R+  I+  GN GS+D DP AA RYTE RL K   
Sbjct: 78  VIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYTEARLAKVTQ 137

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + +DL KDTV+  PN+D +  EP VL   +P +LVNG  GIA G ATN+P HN+ EV+D
Sbjct: 138 VMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVID 197

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             +  I N +  L+ +M+I+ GPDFPTG ++ G  GI+ A+ TG+G IV+R  + I +  
Sbjct: 198 ATIYRIQNAECSLNDVMDILPGPDFPTGGIVQGEEGIREAFTTGKGRIVVRAKTEIIQEK 257

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
              +QIV+TEIPY+V K  +++K+ E+   + +  + D+RDESDR G R+VI++++   A
Sbjct: 258 N-LQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRKDVDA 316

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           ++IL   ++ T LQ  ++ N VA+   +P +  L+G+L AF+ FR+EVV+RR+++ LNK 
Sbjct: 317 NLILQYFFKNTDLQVYYNYNNVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFELNKM 376

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL  AV+ LDEV+ IIR S +   A+  L++                     
Sbjct: 377 EARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIEN-------------------- 416

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                     EVQ  AI+ LRL RL+      +RNE   L  +I+E   IL + S L  +
Sbjct: 417 ------FGFDEVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHL 470

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRA 558
           + QEL  VK+     RRT+I   + ++       I  E +++TVS  GY+KRV L  + A
Sbjct: 471 MVQELRQVKENYGDARRTKIEAKIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNA 530

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R    G     ++  D +     V+T  ++L F+S G      VW++     +  G  L
Sbjct: 531 VRDQETG-----LKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHL 585

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIAMK 677
             ++ ++  E++ + +     +S     ++   TK   +++ KLSD+ ++       A+ 
Sbjct: 586 NKLVRVDSEEKVISAIVVKNFDSY---AWITLVTKGNKIKKTKLSDWKVERTSRLFKAIN 642

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+ +DE+ +     Q  ++L+ TK G  +R   S  ++   + S GV+ + +A  D+V  
Sbjct: 643 LEEKDEVCAAFMTYQSQEVLVVTKDGYALRM--SQDQIPEVKASKGVQAMKVAFEDEVAF 700

Query: 738 MAIVLHAD 745
              V  +D
Sbjct: 701 ATSVYSSD 708



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 99/257 (38%), Gaps = 11/257 (4%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  +K G ++R  L  F  +         L + D+++        
Sbjct: 497 INISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQE---TGLKTGDQLIGQREVNTL 553

Query: 694 NDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           + +LL T  G     P+       +    S   + + +   ++VIS  +V + D+ Y   
Sbjct: 554 DTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDS-YAWI 612

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               K    ++  +S    E TS    +       E     +  + Q +L V++ G+  R
Sbjct: 613 TLVTKGNKIKKTKLSDWKVERTSRLFKAINLEEKDEVCAAFMTYQSQEVLVVTKDGYALR 672

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            S         + KG++A  V+  +E   +     V  +D ++ ++D     R+ + ++R
Sbjct: 673 MSQDQIPEVK-ASKGVQAMKVAFEDE---VAFATSVYSSDNLLFLTDTLQAKRIHLEDLR 728

Query: 872 IASRAT-KGVVIFSTAK 887
           ++ RA   G  I    K
Sbjct: 729 LSGRAKNMGERICKKNK 745



 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 89/274 (32%), Gaps = 23/274 (8%)

Query: 647 YVVFATKHGNVRRNKLS--DFIQINRSGKIAMKL---DSRDEILSVETCTQEN---DILL 698
            ++  T  GN     +   D  +    G    KL   DS ++++S       +    I L
Sbjct: 555 TLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWITL 614

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            TK  +  +  +S  +V   R S   + I+L + D+V +  +   +     E +   K  
Sbjct: 615 VTKGNKIKKTKLSDWKV--ERTSRLFKAINLEEKDEVCAAFMTYQSQ----EVLVVTKDG 668

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
            A R       E   S    +       E            +L +++    KR    D R
Sbjct: 669 YALRMSQDQIPEVKASKGVQAMKVAFEDEVAFATSVYSSDNLLFLTDTLQAKRIHLEDLR 728

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR--VPVNEIRIASRA 876
           +S R+            +    L  V  V     +    + G   R  +   +I    + 
Sbjct: 729 LSGRAKNMGERICKKNKSNPSRLQYVLAVKTGQNL----EFGGEFRQILSTTDIPFKEKE 784

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             G    S  KD  +     I+E+ I DE    E
Sbjct: 785 -MGFSTLSLDKDHYLK--LGIQEALIEDEPLEQE 815


>gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
 gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
          Length = 780

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 271/799 (33%), Positives = 406/799 (50%), Gaps = 35/799 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    SD        + ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSD---DSDTGLGPNDVTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 58  SRLRLSPSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L +D+VDFR NYDG   EP VL A +PN+L NG  
Sbjct: 118 DGDNPAASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E++D C+ +I  PD   D L+  I GPDFPTG  I+     I  
Sbjct: 178 GIAVGMATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E       QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 238 AYRTGRGSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    +V++  L+R + L++ FS+NM V ++G  P+  +L  +L
Sbjct: 298 RDESADDIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEVL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R +V+VRR+KY L K   R  VL G  IA  +LD V+ IIR+  +P+ A   LM
Sbjct: 358 RAFLEHRRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W    ++   +    S    G+D  + LSEVQ  AIL +RL  L  L   ++  E +
Sbjct: 415 IEDWAQDHVRATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAERD 474

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL--DMEDED 531
           +L  E     D+L S       I ++L   +           RRT+  E     ++  E 
Sbjct: 475 ALMEERAGIEDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAEAAEVVEVPLEA 534

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+V        RA          +  +D D    +F   T   +L 
Sbjct: 535 MIEREPITVVCSQMGWV--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDKLLV 586

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F + G  Y      LP G  +  G+ L  ++ L     I   +     E       ++ A
Sbjct: 587 FGANGRFYTVGAANLPGG--RGMGEPLRLMIDLPNDVEIVDFLIHKPGEK------LLVA 638

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  GN       + +   RSGK  + +   D I  V      + + + ++  + + F + 
Sbjct: 639 SAEGNGFVVPEEEVVAQTRSGKQVLNVK--DTIAKVCHRVVGDHVAVVSENAKFLVFEVG 696

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +        V ++    A G Q   M  +    +D            A     +    +
Sbjct: 697 ELPEMNRGKGVRIQKYKKASGRQ--GMLELDGGLSDITTFTWDDGLSWAMGGGKTRTEPD 754

Query: 772 ITSLKNDSSVEGNISEERC 790
           +T  K   +  G       
Sbjct: 755 MTDWKGARAGVGKRPPYGF 773


>gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22]
 gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
 gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22]
 gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
          Length = 752

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 SKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D    E + + +S +G+V+
Sbjct: 452 ASERKMNNLLKKELQADADAFGDERRSPLHEREEAKAMSEHDMQPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D        ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMESDDRK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSKGKGNKIISIP 675

Query: 729 LAK---GDQVISMAIVLHADAD 747
            A+   G   ++   +L   + 
Sbjct: 676 AAEAAAGQDGLAHLFILPPQST 697



 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  ++ +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MESDDRKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIE----DESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           ++ ++  G ++  PV+++   S+  KG  I S 
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIISI 674


>gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 752

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 SKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 452 ASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E N +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPDNAHVMPPLVIEDESNMLLAITAAGRMLMFPVSDLPQLSKGKGNKIISIP 675

Query: 729 LAK---GDQVISMAIVLHADAD 747
            A+   G   ++   VL   + 
Sbjct: 676 AAEAASGQDGLAHLFVLPPQST 697



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     ++++ 
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIE----DESNM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           ++ ++  G ++  PV+++   S+  KG  I S 
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIISI 674


>gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 756

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 245/749 (32%), Positives = 384/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D ++N L+  T L+  + VNM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPV----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMRQFSLSETQAEAILELKLRHLAKLEEMKIRGEQDDLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASDRKLSNLIKKEIQADAQTYGDDRRSPLYERSEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PITLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L+      ++++L+  T  G+ + FP+S +   +    
Sbjct: 613 NDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAITAAGRMLLFPVSDLPQLSKGKG 672

Query: 722 VGVRGIS---LAKGDQVISMAIVLHADAD 747
             +  IS    A+G   ++   +L   A 
Sbjct: 673 NKIVSISSADFAEGKDRLTWLYLLPPQAS 701



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK I        +   AL  +    D++ 
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITL----PDNAKALAPMEIHGDDNL 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV+++   S+           K  ++VS+     +E  D
Sbjct: 647 LMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSISSADFAEGKD 688


>gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
          Length = 782

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 258/745 (34%), Positives = 405/745 (54%), Gaps = 35/745 (4%)

Query: 1   MTEHIISSD--EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +   D     E+G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDLVEDPDMPSAPEQGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMNRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +LD L ++ VDFR NYDG   EP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFVAEAMLDGLNENAVDFRDNYDGRLTEPAVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E++D C+ +I  PD   D L+  + GPDFPTG +I+  +  I
Sbjct: 181 AAGIAVGMATNIPPHNIAELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY+TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 241 AKAYSTGRGSFRLRCKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      V+    +    +V++N ++R + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESADDIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRRDVLQRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L++  W+    + L +    + Y   + G   L+EVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LIREDWSKDHPRALTE----ADYITPARGVGELTEVQAEAILNMRLRSLRKLEEIELTRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMED 529
            ++L  E    +++L+S       I ++L   K +         RRT   E     D+  
Sbjct: 474 RDALREERAGLVELLASEELQWSRISEQLKETKKQFGKDYEGGARRTLFAEAGEAEDVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G+++ +   +  +          +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWIRAMTGHIDLS--------RELKFKDGDAPRFIFHAETTDKL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F S G  Y      LP G  +  G+ L  ++ L     I  ++    +        ++
Sbjct: 586 LVFGSNGRFYTLSAANLPGG--RGMGEPLRLMVDLPNEAEIVDLLIHNPE------GRLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       + +   RSGK  + +   DE   V    + + + + ++ G+ + F 
Sbjct: 638 VASDAGNGFICAEKEIVAQTRSGKQVLNVKD-DERAKVCIPVEGDHVAVVSENGKFLVFA 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQ 734
           +  +        V ++  ++A+G Q
Sbjct: 697 VEEMPELTRGKGVRLQKYNMARGKQ 721



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  +L  S+ G G   +  +     RSGK +      +  ++   V      + D 
Sbjct: 629 IHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDERAKVCIPV------EGDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS+ G  +   V E+   +R  KGV +  
Sbjct: 683 VAVVSENGKFLVFAVEEMPELTRG-KGVRLQK 713


>gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 754

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/809 (31%), Positives = 410/809 (50%), Gaps = 76/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++++  S +    G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDNLADSLD----GVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP+VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  + 
Sbjct: 177 TGIAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDI 296
             Y TG+GS+ +R V H+E        I+VT +P+QV+ A +LE+IA L++ K  +   I
Sbjct: 237 KMYETGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKAPQI 291

Query: 297 ADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
           ADLRDESD +     V+I +      + ++  L+  T L+S + VN+  +    KP+   
Sbjct: 292 ADLRDESDHENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLKN 351

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P   
Sbjct: 352 LRALLVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP--- 408

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +L++R                            LSE+Q   IL+ RL +L  L    +
Sbjct: 409 KAKLIER--------------------------FALSEIQADYILDTRLRQLARLEEMKL 442

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDED 531
           R+E + L  E  +   +LSS ++L  +++ ELL   +     RR+ IVE      + + D
Sbjct: 443 RDEQDELLKEQAKLQALLSSEAKLKKLVRSELLKDAETYGDDRRSPIVERAEAKALTEHD 502

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E + V +S  G++        R+ +      +G+  +  D         ++ S + 
Sbjct: 503 LLPNEKVTVVLSEKGWI--------RSAKGHEIDATGLSYKAGDGFKTSAAGRSNQSAVV 554

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y      LP  S + +G+ L   L+   G     ++   ED         V A
Sbjct: 555 IDSTGRSYSLATHTLP--SARGQGEPLTGRLTPPPGATFECVLMPEED------SLYVIA 606

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFP 709
           +  G     K  D    N++GK  + L +  ++++       + N +   T  G+ + F 
Sbjct: 607 SDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADREHNWLASVTTEGRLLIFK 666

Query: 710 ISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           IS +          + GI    +A  ++ ++   VL   A           + A +R +S
Sbjct: 667 ISDLPQLGKGKGNKIIGISGERVASREEYVTDIAVLPEGATL--------VLQAGKRTLS 718

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKL 795
              +++   K +    GN      Q +  
Sbjct: 719 LKADDLEHYKGERGRRGNKLPRGFQRVDA 747



 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 73/209 (34%), Gaps = 24/209 (11%)

Query: 689 TCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               E   ++ ++ G  +  +         + +   G +  +  + +Q  S  ++     
Sbjct: 503 LLPNEKVTVVLSEKGWIRSAKGHEIDATGLSYKAGDGFKTSAAGRSNQ--SAVVIDSTGR 560

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            Y      +     Q   ++G          +           C  +  ++   +  S+ 
Sbjct: 561 SYSLATHTLPSARGQGEPLTGRLTPPPGATFE-----------CVLMPEEDSLYVIASDA 609

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV--NDNDQIILVSDKGTLIR 864
           G+G      D +  N++GK + +           ++A  PV   +++ +  V+ +G L+ 
Sbjct: 610 GYGFVVKGEDLQAKNKAGKALLSLP-----NNAKVIAPRPVADREHNWLASVTTEGRLLI 664

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVS 893
             ++++    +  KG  I   +  ERV S
Sbjct: 665 FKISDLPQLGKG-KGNKIIGIS-GERVAS 691


>gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
 gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
          Length = 968

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 308/941 (32%), Positives = 474/941 (50%), Gaps = 88/941 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +  +D   +  I  V + + M ++YL YAI V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKV--NDIPRDNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+    ++ Y K ARI G+++GKYHPHG+ ++YDA+  MAQ++S R  LI+G GN+GS+
Sbjct: 59  YQLKAFPDRPYYKSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSM 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ K+TVD  PNY  S  EP VL +RYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV DG +A IDN +I    LM  ++GPD PTG +++G+  I  A
Sbjct: 179 GIAVGLATNIPPHNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILIGQNSILAA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  ++IE+    R  IV+TE P++ NKA +L+ I+E+  +KR    +  I
Sbjct: 239 YETGEGKVTLRAKTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESI 298

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIEL++ A    AD +L  L++ T LQ   S NMVAL   KP+   
Sbjct: 299 VDIRDESDRSGVRAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGKPQTMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+K +V  ++E+V RRT   L+ A  R H++ G   A+  LDE+++ IR S + + A
Sbjct: 359 LKTIIKHYVNHQKEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +E+Q  AILEL L RLTGL     
Sbjct: 419 GVNLISK--------------------------FGFTEIQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           + E   L   IK+   ILS    LL ++K EL  V D+   PR+T I+  +    ++ E+
Sbjct: 453 QKEYAELEKTIKKLKKILSEEKELLKVVKNELKEVSDKYRNPRKTSIIKDDNEAKIDVEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+++T+S  G++KR+PL  +       +       R+ D +  LF  +T  S+L 
Sbjct: 513 LIVVEDVMITLSKDGFIKRIPLKTFNRLNAKAEDIE---YREGDELKFLFKSNTTESILL 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +Y+ K   +P G  + +G+ + NI+     E    I       S   + Y+ F 
Sbjct: 570 FTNKGNMYQTKGINIPEGKWKEKGEKVDNIIKTLNLEEENIIFATSVT-SFIPSKYIQFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRF 708
           T  G ++R+ L D  Q + +   A+KL   +E++ V    QE     I   TK G     
Sbjct: 629 TSRGGIKRSSL-DKFQTSYTKLQAIKLKELEEVIDVILLNQEEVKEFISFETKEGLSFSL 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVI------SMAIV--------------------- 741
            I  I     RN +     +L+  D++I      +M  V                     
Sbjct: 688 QIPKIEDLP-RNILPTIMFNLSNKDEIIKVEYSETMEFVNFSIGITSKGTIKGFNSIKKN 746

Query: 742 ---------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                    L     +  +    K  +     +S     +  + ++   +  + +    +
Sbjct: 747 DNLKVSTDSLSNVLMFTNKGKVFKIPAFLLSGVSKGELPLDKIVDNIEKDEKVIKVFSLK 806

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851
              + +FI   + +G  K+T+  +F      G            +   L++V   +D   
Sbjct: 807 TFEENKFIYFFTRRGMIKKTALTEF-----DGNYSTQITYKFKYDNDELISVELYDDCQV 861

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ++++++ K   I+     +    +   GV   S  +++ V+
Sbjct: 862 EMLIITKKAMGIKFSSENVNTMGKVASGVTGISLKENDEVI 902



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 140/396 (35%), Gaps = 71/396 (17%)

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS-------VK 509
           I    L +           +L  L   I     IL ++  +   I  E          + 
Sbjct: 634 IKRSSLDKFQTSYTKLQAIKLKELEEVIDV---ILLNQEEVKEFISFETKEGLSFSLQIP 690

Query: 510 DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              D PR        +       +  +D ++ V +   ++ V  S+    +   KG +  
Sbjct: 691 KIEDLPR-------NILPTIMFNLSNKDEIIKVEYSETMEFVNFSIGITSKGTIKGFNS- 742

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK-ALINIL-SLNQG 627
            ++  D +       + ++VL F++ G V+K   + L   S  ++G+  L  I+ ++ + 
Sbjct: 743 -IKKNDNLK--VSTDSLSNVLMFTNKGKVFKIPAFLL---SGVSKGELPLDKIVDNIEKD 796

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E++  +      E    N ++ F T+ G +++  L++F     +          DE++SV
Sbjct: 797 EKVIKVFSLKTFEE---NKFIYFFTRRGMIKKTALTEFDGNYSTQITYKFKYDNDELISV 853

Query: 688 ETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           E       ++L+ TK    ++F    +     + + GV GISL + D+VI  +++     
Sbjct: 854 ELYDDCQVEMLIITKKAMGIKFSSENVNTMG-KVASGVTGISLKENDEVIYGSLIGSQSR 912

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D    I                                               I  +S+ 
Sbjct: 913 DNTNEIALTSTDK----------------------------------------ITLISKN 932

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              K     D ++ NR+GKG     +S  +EI  ++
Sbjct: 933 KEKKEVELEDIKLQNRAGKGSSIMTISLEDEIKEII 968


>gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
 gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
          Length = 781

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 259/744 (34%), Positives = 406/744 (54%), Gaps = 34/744 (4%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M + I   D  + + G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MNDLIDDPDSVKPQDGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  N  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG+
Sbjct: 61  MNRLRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+   A  +L+ L +D VDFR NYDG   EP VL A +PN+L NG 
Sbjct: 121 IDGDNPAASRYTEARMTFVAEAMLEGLSEDAVDFRDNYDGRLTEPAVLPATFPNILANGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMATNIP HN+ E++D CV +I  PD   D L+  + GPDFPTG +I+  +  I 
Sbjct: 181 AGIAVGMATNIPPHNIAELIDACVHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY+TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +AD
Sbjct: 241 KAYSTGRGSFRLRAKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           +RDES      ++    +    DV++N ++R + L++ FS+NM V ++G  P+  ++  +
Sbjct: 301 VRDESAEDIRIILEPKSKNVDPDVLMNMMFRNSDLETRFSLNMNVLIDGVTPKVCSMKEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   L
Sbjct: 361 LRAFLDHRRDVLQRRSRHRMAKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAA---L 417

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+  W     +D      ++ Y   + GT  LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 418 MREDWG----QDHPRAFSEAEYVSPAKGTGELSEVQAEAILNMRLRSLRKLEEIELTRER 473

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDE 530
           ++L  E    +++L S       I ++L   K +         RRT   E   + ++  E
Sbjct: 474 DALREERAGLVELLGSEELQWTRITEQLRETKKQFGKDYEGGARRTLFAEAGEVEEVPLE 533

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V  S +G+V+ +   +  +          +  +D D    +F   T   +L
Sbjct: 534 AMIDKEPITVVCSQMGWVRAMTGHIDLS--------RELKFKDGDGPRFIFHAETTDRLL 585

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G  +  G+ +  ++ L     I  ++    +        ++ 
Sbjct: 586 VFGSNGRFYTLSAANLPGG--RGMGEPVRLMVDLPNEAEIVDLLIHNPE------GRLLV 637

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  GN       + +   RSGK  + +   D    +    Q + + + ++ G+ + F +
Sbjct: 638 ASDAGNGFICAEKEIVAQTRSGKQVLNVKDDDR-AKICIPVQGDHVAVVSENGKFLVFSV 696

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQ 734
             +   +    V ++  ++A+G Q
Sbjct: 697 EEMPELSRGKGVRLQKYNMARGKQ 720



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  +L  S+ G G   +  +     RSGK +         +I   V        D 
Sbjct: 628 IHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDDRAKICIPV------QGDH 681

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS+ G  +   V E+   SR  KGV +  
Sbjct: 682 VAVVSENGKFLVFSVEEMPELSRG-KGVRLQK 712


>gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 751

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 400/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPS 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +       G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 772

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/769 (33%), Positives = 381/769 (49%), Gaps = 74/769 (9%)

Query: 1   MTEHIISSD---EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MTE     D    E   G  ++++    + +YL YAI+V+ GRA+PD+ DG KPV RRIL
Sbjct: 1   MTEQATLFDGDTPEPPDGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F M Q+G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQ +SLR  LI+GQGNF
Sbjct: 61  FAMNQLGLNAAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS DGD  AA RYTE RL   +  LLD++   TVDF+PNYDGS +EP +L  R P VL+N
Sbjct: 121 GSRDGDGAAAMRYTEARLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TG 236
           G  GIAVGMAT IP+HNL EV    VA+I NP +    LM II GPDFP+G  I+     
Sbjct: 181 GASGIAVGMATEIPSHNLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAA 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           +   YA GRGS+ +R +  IE+ +  + Q VVTE+P+  +   +LE+I EL   K  +  
Sbjct: 241 LSEMYANGRGSLKVRALWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGK 300

Query: 297 A------------------DLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSL 336
                               +RDES R+    ++   +  + D     N L   TSL++ 
Sbjct: 301 KALSPDQLAQKQLMLSLLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETS 360

Query: 337 FSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+N+V + G  +P +  L  IL+ ++AFR + V RR+ + L K  DR H+L G    + 
Sbjct: 361 ASINLVMIGGDGRPRQKGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILL 420

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+RIIR S  P+ A                               G   LS+ Q  
Sbjct: 421 NIDEVIRIIRESDEPKPA-----------------------------LMGAFKLSDRQAE 451

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            ILE+RL +L  L    I+ EL  L  E     ++L++   +  +I +E+ + +      
Sbjct: 452 DILEIRLRQLARLEAIKIQQELAGLRTEKSTLEELLNNPGAMKKLIIKEIDADEKRFGDA 511

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RRT I E       E  ++ E + V +S  G++        RA+   G   +    +  D
Sbjct: 512 RRTLI-EAAERATVEQKVIDEPVTVVISQKGWL--------RARTGHGHDPAQFAFKAGD 562

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            +   F   T  S+L F S G +Y   V  LP    +  G  +  ++ L  G  +     
Sbjct: 563 DLYRTFECRTLDSLLAFGSNGRIYSIAVSSLPGA--RGDGAPISALVELASGSTVLHYFA 620

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQEN 694
              D        ++ A+  G     + +D I  N++GK  + LD+ D  L  +      +
Sbjct: 621 GSAD------STMLLASTAGYGFIARAADMIGRNKAGKAFITLDAGDLPLPPQMLIPSAS 674

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
            +   +  G+ + F +  ++  +     G+  ++L  G+++++   V  
Sbjct: 675 SVACLSGEGRLLVFGLDELKTMS--GGRGMILMALEDGEKLLAAQPVSQ 721


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 289/830 (34%), Positives = 431/830 (51%), Gaps = 57/830 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   LD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+ +I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVRKPDLSDDKLLSLIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R TSLQS F   M+AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRRLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L KA DR  V+ GL  A+ +L  V+ +I+ + +   AR  LM        
Sbjct: 363 LTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL R+ +R E   L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + QEL  +K    TPRRTR+VEG   +  E    +           
Sbjct: 457 LKLLLDNRDQLLDALVQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPNAELQRRQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                P S    Q  G          G+          D       +  +     +L  +
Sbjct: 517 LEALPPDSRILIQDDGQVKVISPQLMGRLHLNEPTALGDEPSPARIILPIKPVAKLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV---F 650
           + G V     W      P +  + L   L   QG+ + +++  P+ E+  N   V     
Sbjct: 577 ASGRV-ALIRWEFAGQQPGSLERFLPTAL---QGDPVVSVLQLPDAEADSNAAAVSSLGL 632

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G  +R  + + + ++      +KL    E+ +   C +   + L + LG+ +  P+
Sbjct: 633 LSSDGRFKRLAMQELLDLSGRAASVVKLKEGIELKTAVICQEGGALSLISDLGRVLHLPV 692

Query: 711 SAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD---ERICYMKHMSAQRRLIS 766
           S       G+ + G   + L   + +I+         D      R   +K ++       
Sbjct: 693 SEANLPLMGKLAQGPVTMRLLPEESLIAAVATNPDQQDPLLLFSRQGRIKSLARDAVRAC 752

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              +           +G   E+R          +  V+  G   R  + +
Sbjct: 753 QRGDLGVIGWQPEQ-DGRDPEDRLCAACTGSGLVGVVTSSGRHGRLLATE 801



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 61/157 (38%), Gaps = 11/157 (7%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEG-NISEERCQELKLKEQFILTVSEKGFG 809
           R+  ++   A ++  S +    T+L+ D  V    + +            +  +S  G  
Sbjct: 580 RVALIRWEFAGQQPGSLERFLPTALQGDPVVSVLQLPDAEADSNAAAVSSLGLLSSDGRF 639

Query: 810 KRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           KR +  +   +S R      A  V K+ E   L       +   + L+SD G ++ +PV+
Sbjct: 640 KRLAMQELLDLSGR------AASVVKLKEGIELKTAVICQEGGALSLISDLGRVLHLPVS 693

Query: 869 E--IRIASRATKGVVIFSTAKDER-VVSVERIRESEI 902
           E  + +  +  +G V      +E  + +V    + + 
Sbjct: 694 EANLPLMGKLAQGPVTMRLLPEESLIAAVATNPDQQD 730


>gi|260435822|ref|ZP_05789792.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
 gi|260413696|gb|EEX06992.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
          Length = 822

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 285/854 (33%), Positives = 441/854 (51%), Gaps = 57/854 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVEPIALHREMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  + +++G+DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+G +A+I  P++  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVEGLIALIRKPELSDEKLLELIPGPDFPTGGEVLISSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ FRE
Sbjct: 303 GMRVVVELRRDADPENVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQTFLDFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLISALNNLQAVIAMIQEANDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL+ L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELDELRAERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL ++K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLDNRDQLLDAMVTELKALKKRFSTPRRTRLVEGGDALMAERAASQRPNTELLRQQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                       Q  G          G+          D       +  +     +L  S
Sbjct: 517 LAALPGDGRVLIQADGQVKIVTPQVLGRLHLNDPCPIGDAPSPARVILPIEPPPRLLAVS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G + + + W      P    + L   L    G+ I +++  P    + +NL +   + 
Sbjct: 577 ARGRIAQVR-WEFAGQQPGPIDRFLPTGL---DGDPIVSLLSLPS--QNIDNLSLGLLSS 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  LS+ + ++      +KL    E+ S   C  +  + L + +G+ +R  ++  
Sbjct: 631 DGRFKRLPLSEIVDLSGRATSVLKLKEGVELNSAVICRDQGTLALISDIGRLLRLRVTED 690

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                GR + G   + L  G+ ++               +   +     R   SG     
Sbjct: 691 SLPLMGRLAQGPMTMRLLPGEHIVGAVCTEQT-----PLMLITRQGMIGRIDYSGLRYNQ 745

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                  +++ +   +R   +      +   + K    R    +  +S    K      +
Sbjct: 746 RGDLGSMALQIDAESDRLVGISTGPGLVGVRTSKDRHGRLDPDNINVSKPGDKPTEQASL 805

Query: 833 SKINEIGALVAVFP 846
            K   I  ++    
Sbjct: 806 QKGEAIVDVINAIQ 819



 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 804 SEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR    +   +S R      AT V K+ E   L +     D   + L+SD G L
Sbjct: 629 SSDGRFKRLPLSEIVDLSGR------ATSVLKLKEGVELNSAVICRDQGTLALISDIGRL 682

Query: 863 IRVPV--NEIRIASRATKGVVIFSTAKDERVVS 893
           +R+ V  + + +  R  +G +       E +V 
Sbjct: 683 LRLRVTEDSLPLMGRLAQGPMTMRLLPGEHIVG 715



 Score = 42.6 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD ++S+  +   + D +  +  +      +RL   +  +++             E   
Sbjct: 605 DGDPIVSLLSLPSQNID-NLSLGLLSSDGRFKRLPLSEIVDLSGRATSVLKLKEGVELNS 663

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +   +  +  +S+ G   R    +    +  R  +G     +     I   V      
Sbjct: 664 AVICRDQGTLALISDIGRLLRLRVTEDSLPLMGRLAQGPMTMRLLPGEHIVGAV----CT 719

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSV 894
           +   ++L++ +G + R+  + +R   R   G +      + +R+V +
Sbjct: 720 EQTPLMLITRQGMIGRIDYSGLRYNQRGDLGSMALQIDAESDRLVGI 766


>gi|325661697|ref|ZP_08150320.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471950|gb|EGC75165.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 746

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 248/763 (32%), Positives = 412/763 (53%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ +     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   NEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQD+   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 ESRLAKITQEAYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D   A + N +I  + L+  ++GPDFPTG +++ +  + + Y TG G I +
Sbjct: 182 PTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVVNKDDLPSIYETGTGKIKL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E   G ++++V++EIPY +        L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADGRPETMGLRQIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ R+ K LL K   +  +  GL  A   +D ++ I+R S + + A+  L+  +      
Sbjct: 362 LMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVENITF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K                  +  +E Q  AILE+RL +L GL  + +  E       I++ 
Sbjct: 422 KTAASKK--------KAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  EL   K      RRT I  G   + +E+ +  +D+++ +   GY
Sbjct: 474 EDILNNYDSMTNVIIDELEGYKKAYARERRTVIENGKEAIYEENKVEEQDVILLLDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +      +            +        V  F++ G +++ KV  +P
Sbjct: 534 AKTVDVATYERNKEAADSEN----------KHIVPCKNTGKVCIFTNTGKMHQVKVSDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +   + N+ + +  +     +     E    +  ++F T+   +++    +F+ 
Sbjct: 584 YGKFRDKSVPIDNLGNYDSAQEEIVYLCA---EEELKDAKLLFVTRQSMLKQVAGEEFL- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +++    A KL   DE+++V    +E +I+L T+ G  +RF +S +     + +VGVRG+
Sbjct: 640 VSKRTTAATKLQEEDEVVAVIKVLEEQNIVLQTEGGYFLRFLLSEVPEK-KKGAVGVRGM 698

Query: 728 SLAKGDQVISMAIV---LHADADYDERICYMKHMSAQRRLISG 767
            L K D++  + +    +     Y E+   +  +   +R   G
Sbjct: 699 KLQKSDRIEQIYLFADGVDTKGSYQEKEVSLNRLKLNKRDGKG 741



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C E +LK+  +L V+ +   K+ +  +F +S R       T  +K+ E   +VAV  V
Sbjct: 609 YLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKR------TTAATKLQEEDEVVAVIKV 662

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +   I+L ++ G  +R  ++E+    +   GV      K +R+
Sbjct: 663 LEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRI 706


>gi|50954717|ref|YP_062005.1| DNA topoisomerase IV subunit A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951199|gb|AAT88900.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 823

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 281/761 (36%), Positives = 410/761 (53%), Gaps = 56/761 (7%)

Query: 5   IISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   D +    + I  V +T EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +
Sbjct: 1   MTPPDNQAPATERIEDVDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMTE 60

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  ++ +VK AR++GEVMGK HPHG++AIY+AL RMAQD++LR+ LI+G GNFGS+D 
Sbjct: 61  MGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYEALVRMAQDFTLRVPLIDGHGNFGSLD- 119

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL  AA  L  DL +D VDF PNYD    +P VL A +PN+LVNG  GI
Sbjct: 120 DGPAAARYTEARLAAAALALTGDLDEDVVDFVPNYDNQLMQPDVLPAAFPNLLVNGASGI 179

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL EVV     ++DNPD  LD LM  I GPD P+G  I G +G+++AYA
Sbjct: 180 AVGMATNMAPHNLVEVVGAARHLLDNPDATLDDLMAYIPGPDLPSGGAIAGLSGVRDAYA 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS  +R    IE  +  +  +VVTE+PY V    ++EKI + V  K++  I+D+ D 
Sbjct: 240 TGRGSFRMRAKVGIEPITARKNGLVVTELPYGVGPERVIEKIKDGVSAKKLKGISDVTDL 299

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           SDR  G R++I +K G S + +L QLYR+T L+  FS+N VAL    P+   L  +L  +
Sbjct: 300 SDRKHGLRLIIGVKTGFSPEAVLEQLYRHTPLEEGFSINSVALVEGGPQTLGLRELLSVY 359

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RR+++ L + ++R H++ GL +A+ ++DE +++IR S + + AR  LMQ  
Sbjct: 360 LGHRIRVVTRRSEFRLARRKERLHLVEGLLVAILDIDEAIQVIRSSDDTDQARSRLMQ-- 417

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS +Q   ILELRL RLT   R ++  E + L 
Sbjct: 418 ------------------------VFDLSTLQADYILELRLRRLTRFSRIELEAERDQLR 453

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---------EDEDC 532
            EI E   +L+SRS +  ++  EL  V     TPRRT + E    +           +  
Sbjct: 454 AEIAELEALLASRSLINALVSDELEQVAATFGTPRRTLLTEAKPSIASTSRGKAAAAQLE 513

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLF 591
           +      V +S  G + RV       Q  G       V R   D +      ++H+ +  
Sbjct: 514 VADVPCRVFLSTTGRILRVDAGT--EQDTGLDRIQPPVRRSKHDAILSRLDTTSHSEIGA 571

Query: 592 FSSLGFVYKEKVWRLPIGSPQAR----GKALINILSL-NQGERITTIMPFPEDESSWNNL 646
            ++ G + +     LP   P +     G  + + L+L ++ ERI  ++     +      
Sbjct: 572 VTNRGRLLRFSPVDLPAAPPNSIQLGAGVKVGDYLALADKKERILALVSLDSPKP----- 626

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   T+ G V+R    D+        I   L + DE++        ++++      Q +
Sbjct: 627 -IALGTRQGVVKRVAPGDWASKPEFEIIG--LKAGDEVVGAAHTEDTDELVFVASDSQLL 683

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           RFP +++R   GR + G+ GI+LA G +VI    V   + D
Sbjct: 684 RFPAASVRP-QGRAAGGMAGIALAPGARVIFFGSVSATEKD 723



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  KR +  D+              +   +E   +V      D D+++ V+    L+
Sbjct: 631 TRQGVVKRVAPGDWASKP----EFEIIGLKAGDE---VVGAAHTEDTDELVFVASDSQLL 683

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R P   +R   RA  G+   + A   RV+    +  +E  
Sbjct: 684 RFPAASVRPQGRAAGGMAGIALAPGARVIFFGSVSATEKD 723



 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 81/261 (31%), Gaps = 31/261 (11%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP--- 709
             G  +   L       R  K    L   D        T  ++I   T  G+ +RF    
Sbjct: 533 DAGTEQDTGLDRIQPPVRRSKHDAILSRLD-------TTSHSEIGAVTNRGRLLRFSPVD 585

Query: 710 ISAIRVFAGRNSVGVR-GISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + A    + +   GV+ G  LA   K ++++++  +             +    A     
Sbjct: 586 LPAAPPNSIQLGAGVKVGDYLALADKKERILALVSLDSPKPIALGTRQGVVKRVAPGDWA 645

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           S    EI  LK    V G    E   EL      +   S+     R  +   R   R+  
Sbjct: 646 SKPEFEIIGLKAGDEVVGAAHTEDTDEL------VFVASDSQL-LRFPAASVRPQGRAAG 698

Query: 826 GIRATDVSKINEIGALVAVFPVNDN----------DQIILVSDKGTLIRVPVNEIRIASR 875
           G+    ++    +    +V     +          DQ +  SD G+       E     R
Sbjct: 699 GMAGIALAPGARVIFFGSVSATEKDTAVVVTVAVSDQTLPGSDPGSGKVSDFAEFPAKGR 758

Query: 876 ATKGVVIFSTAKDERVVSVER 896
           AT GV      K E  +++  
Sbjct: 759 ATGGVRSQRFLKGETELALAW 779


>gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341]
 gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341]
          Length = 761

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 254/802 (31%), Positives = 411/802 (51%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV +  + +ID+P   L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FNLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+++         Q         +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWIRHAKGHDVDGQ--------SLSYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   + 
Sbjct: 612 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 724 RGERGRRGALLPRGLQRVTAIE 745



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D D+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 645 DKDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 680


>gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 756

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 245/749 (32%), Positives = 385/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    V +++NP   L+ L++ ++GPDFPT A +I  R  ++  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D ++N L+  T L+  + VNM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPV----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMRQFSLSETQAEAILELKLRHLAKLEEMKIRGEQDDLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ S        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASDRKLSNLIKKEIQSDAQAYGDDRRSPLRERSEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D    +    ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAVAKGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PITLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L+      ++++L+  T  G+ + FP+S +   +    
Sbjct: 613 NDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAITAAGRMLLFPVSDLPQLSKGKG 672

Query: 722 VGVRGIS---LAKGDQVISMAIVLHADAD 747
             +  IS    A+G   ++   +L   A 
Sbjct: 673 NKIVSISSADFAEGKDRLTWLYLLPPQAS 701



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK I        +   AL  +    D++ 
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITL----PDNAKALAPIEIKGDDNL 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV+++   S+           K  ++VS+     +E  D
Sbjct: 647 LMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSISSADFAEGKD 688


>gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
 gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
          Length = 751

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 384/750 (51%), Gaps = 62/750 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG  TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           +IP HN  EV    VA+++ P ++LD +M+ I GPDFPT A I+     I+  Y  GRGS
Sbjct: 183 DIPPHNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDIRKVYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+ +      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWEKEEGN-----AVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++  L+  T L+  + VN+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIIY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEPKAV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +S+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FNISDTQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
            E   IL S +RL  +IK+E+ +        RR+ +   E    + + + +  E + V +
Sbjct: 449 DELQAILGSEARLNTLIKKEIQADAKAYGDDRRSPLQEREEAKALSEHEILPSEPITVVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      S +  +  D         ++ + +F  S G  Y   
Sbjct: 509 SDMGWV--------RSAKGHDIEPSNLSYKAGDSFKGAARGKSNQAAVFLDSTGRSYSID 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   L+L  G  I  ++  PE++        + A+  G       
Sbjct: 561 PLELP--SARSQGEPLTGKLTLPPGATIEHVLMAPEEQK------YLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +D +  N++GK  M L    ++++       +E+ +L  TK G+ + FP+S +   +   
Sbjct: 613 NDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLAITKAGRMLLFPVSDLPQLSKGK 672

Query: 721 SVGVR---GISLAKGDQVISMAIVLHADAD 747
              +    G   A G+ ++   +V+   A 
Sbjct: 673 GNKIINITGAQAASGEDLLVWLMVIPPQAS 702



 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +EQ  L  S+ G+G   +  D    N++GK +    + +  ++ A + +      D 
Sbjct: 591 MAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKAL--MSLPENAKVMAPIELNN-EKEDL 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           ++ ++  G ++  PV+++   S+  KG  I + 
Sbjct: 648 LLAITKAGRMLLFPVSDLPQLSKG-KGNKIINI 679


>gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 793

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 284/898 (31%), Positives = 454/898 (50%), Gaps = 112/898 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE +GK+HPHG+A++YDAL RMAQD+++R  LIEGQGNFGS+DGDPPAA RYTE 
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           N  EV +    + + PD  ++ L   I+GPDFPTG VI   +  + + Y + RGSI I+G
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G+R++IV+ EIPYQVNK  +++KIAELVR  +   I+DLRDESDR G R+VI
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+ +L +LY+ T L+  F VN+  L   +P    L  +L+ F+  R E++ RR
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R H++ GL  A+ N D+V+ I+R S +   AR  L  +            
Sbjct: 362 TLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARELLTSQ------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL++RL+R T L    +++E   L  +I+    ILS
Sbjct: 410 --------------FNLSETQANAILDMRLSRFTSLETQKLKDESTELKQKIERYKQILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S    + +  +E   +  +    R+T I        +++   +E  +  + + G +    
Sbjct: 456 SDDEKIKVFIEETDELVRKYGDQRKTTIA------TEKELTFKEHFMFAILNTGRIVNYK 509

Query: 553 LSVYRAQRRGGK---GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +    ++    +       + + + + +  +  V     + FF+  G  Y   V  LP  
Sbjct: 510 VEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLP-- 567

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +G+  +NI    +GE     +     +       V   TK G ++R    D    +
Sbjct: 568 ----KGEDKLNI----EGE-----IVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYKS 614

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G + M L+  DE++        + I + TK    + F  + +R+  G  + GV  I L
Sbjct: 615 Q-GHMVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRI-TGDKAKGVEAIDL 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V     +   +        Y+   ++   +   +  E    K        +    
Sbjct: 673 DENDEVAGAFFLNGHE--------YLLVSTSFGYMKHVEKTEFPIKKRAQKGLMAVKL-- 722

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                                          N+    +    V++ +E            
Sbjct: 723 -------------------------------NKGDYVVSILPVNESDE------------ 739

Query: 850 NDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              +++ + +G L+++ +++  I I  R + G  +F   + +R+V+V ++   E   E
Sbjct: 740 ---VLINTKRGKLLKLKIDKEAIPIEKRTSLGKNLFRF-EADRIVNVLKLPLFEESKE 793


>gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 755

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 382/747 (51%), Gaps = 59/747 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  EVV+  V ++D P   LD LME ++GPD+PT A +I     I+  Y  GRGS
Sbjct: 183 DIPPHNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  +     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWSKEDGN-----VVITALPHQVSGAKVLEQIANQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++N L+  T L+  + VN+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V +R  + L K   R HVL GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGLSETQTEAILELKLRHLAKLEEVKIRGEQSELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   ILSS  +L  ++K+E+++        RR+ + E      M + D    E + + +
Sbjct: 449 DKLQAILSSERKLNTLLKKEIMADAATYGDERRSPMRERDEAKAMSEHDITPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  + G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPAGLNYKAGDSFRGAARGKSNQPVVFIDTTGRSYSLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L++  G  +  ++  P+++        +  +  G       
Sbjct: 561 PRDLP--SARGQGEPLTGKLTVPAGATVEHVLMAPDEQQ------FLMVSDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
           SD +  NR+GK  + L     +++       Q++ +L  T+ G+ + FP++ +   +   
Sbjct: 613 SDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLAITRAGRMLMFPVADLPQLSKGK 672

Query: 721 SVGVRGISLAKGDQVISMAIVLHADAD 747
              +  +  A  + ++S  ++L   + 
Sbjct: 673 GNKIISVQSAAENDLLSWLLILPPQSS 699



 Score = 45.7 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 17/112 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--N 850
           +   EQ  L VS+ G+G   +  D    NR+GK +         E   ++    +N+  +
Sbjct: 591 MAPDEQQFLMVSDAGYGFICTFSDLVAKNRAGKALITL-----PENARVMTPLEINNPQD 645

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D ++ ++  G ++  PV ++   S+           K  +++SV+   E+++
Sbjct: 646 DMLLAITRAGRMLMFPVADLPQLSK----------GKGNKIISVQSAAENDL 687


>gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea
           MMB-1]
 gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1]
          Length = 756

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/751 (31%), Positives = 397/751 (52%), Gaps = 63/751 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD    +   ++S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ 
Sbjct: 2   SDLSNFESNETLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL K +  LL ++ + TVD+ PN+DG+ +EP VL AR PN+L+NG  GIAVGM
Sbjct: 122 AMRYTESRLSKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT++P HNL E+ + CV +++NP  +LD L+E ++GPDFPTG  +I  R+ ++  Y  G+
Sbjct: 182 ATDVPPHNLREIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYELGK 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G +  R    IE       +IVV E+P+QV+ + +LE++A  ++ K++  + DLRDESD 
Sbjct: 242 GQVKARARYRIEDG-----EIVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDESDH 296

Query: 306 QGY--RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     V++        + ++  L+  T L+  + VNM  +     P+   L   +K ++
Sbjct: 297 ENPTRFVIVPKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKGLRAFIKEWL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR +VV +R ++ L+K  +R H+L GL +A  N+DEV+ IIR    P   + EL++R  
Sbjct: 357 TFRIDVVRKRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIRNEDKP---KEELIKR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q  AILEL+L  L  L    I++E + L  
Sbjct: 412 ------------------------FGLSDSQAEAILELKLRHLAKLEEMRIKSEQDELNK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  +L  +I +E+    ++    RRT ++E        +ED +  + + V
Sbjct: 448 EREQLEALLGSDRKLKKLITEEIKEAIEDFGDERRTPLIERKEAQAFSEEDLLSNDPVTV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        RA +      +G+  +  D         T+ +++  +S G  Y 
Sbjct: 508 VLSKQGWI--------RAAKGHDIDVTGLSYKSGDEFLLSAKGRTNQTLVLIASNGRTYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K   LP  S + +G+ +   +SL +G  I   +   E+       + + A+  G     
Sbjct: 560 LKAHTLP--SARGQGEPITGRISLEKGATIVAAVLDSEE------AHYLLASDAGYGFVA 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG 718
           +L D    N++GK  + L S  E++S       + + +++ +  G+ + F + ++   A 
Sbjct: 612 QLKDLYAKNKAGKATLSLPSNAEVISPVKVESPEGDKVVVVSNEGRMLAFSVKSLPQMAK 671

Query: 719 RNSVGVRGI---SLAKGDQ-VISMAIVLHAD 745
                +  I     A  ++ VI+MA +   D
Sbjct: 672 GKGNKMLSIPSSRAADREELVIAMATIQSND 702


>gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 378/742 (50%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLTFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPV---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E N L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D    E + + +S  G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAFGDDRRSPLHEREEAKAMNEHDMQPSEPVTIVLSQSGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKAGDSFKAAVKGKSNQPVAFIDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMEADDQK------LLLASDAGYGFICTFNDLVSRN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKAMISLPDNAHVMPPLVVENESDMLLAITSAGRMLMFPVSDLPELSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKG+  ++   +L   + 
Sbjct: 676 SAEAAKGEDGLAHLFILPPQST 697



 Score = 45.3 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK + +   +       +V     N++D 
Sbjct: 587 MEADDQKLLLASDAGYGFICTFNDLVSRNRAGKAMISLPDNAHVMPPLVVE----NESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITSAGRMLMFPVSDLPELSKG-KGNKIINIPSAE 678


>gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/742 (31%), Positives = 378/742 (50%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 SKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+                    
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKP------------------- 401

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 402 ----------PLMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 452 ASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSKGKGNKIISIP 675

Query: 729 LAK---GDQVISMAIVLHADAD 747
            A+   G   ++   VL   + 
Sbjct: 676 AAEAAAGQDGLAHLFVLPPQST 697



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIE----DESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           ++ ++  G ++  PV+++   S+  KG  I S 
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIISI 674


>gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
 gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
          Length = 782

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 259/745 (34%), Positives = 405/745 (54%), Gaps = 35/745 (4%)

Query: 1   MTEHIISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +   D  +      V   +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDLVDDQDTPDSPASGEVLEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMNRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG   EP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFIAEAMLEGLNENAVDFRDNYDGRLTEPAVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E++D C+ +I  PD   D L+  + GPDFPTG +I+  +  I
Sbjct: 181 ASGIAVGMATNIPPHNIAELIDACIHLIRTPDARDDTLLNYVPGPDFPTGGIIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY+TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 241 AKAYSTGRGSFRLRCQHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      ++    +    +V++N ++R + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESADDIRIILEPKSKNVDPEVLMNMMFRNSDLEVRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R +V+ RR+++ ++K   R  VL G  IA  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+  W+    +       ++ Y    +G   L+EVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMREDWDRDHPRAY----SEAEYVSPGEGVGELTEVQAEAILNMRLRSLRRLEEIELTRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMED 529
            ++L  E    +++L S       I ++L   K +         RRTR  E   + D+  
Sbjct: 474 RDALREERAGLVELLGSEELQWSRITEQLKDTKKQFGKDYAGGARRTRFAEAGEVEDVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G++        RA          +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F S G  Y      LP G  +  G+ L  ++ L     I  I+    D        ++
Sbjct: 586 LVFGSNGRFYTVSAANLPGG--RGMGEPLRLMVDLPNEVEIVDILIHNPD------GRLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       D +   RSGK  + +   D+   +    + + + + ++ G+ + F 
Sbjct: 638 VASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDK-AKICIPVEGDHVAVVSENGKFLVFS 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQ 734
           +  +   +    V ++  ++A+G Q
Sbjct: 697 VEEMPELSRGKGVRLQKYNMARGKQ 721



 Score = 43.4 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +  +L  S+ G G   +  D     RSGK +         +I   V      + D 
Sbjct: 629 IHNPDGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDKAKICIPV------EGDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS+ G  +   V E+   SR  KGV +  
Sbjct: 683 VAVVSENGKFLVFSVEEMPELSRG-KGVRLQK 713


>gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 751

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 250/794 (31%), Positives = 400/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPS 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +       G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLHAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
 gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
          Length = 757

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 246/752 (32%), Positives = 394/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP   L  LM+ ++GPD+PT A I+     ++  Y TGR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V H E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +S++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGISDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+EL +  ++    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHEVDCEGLNYKAGDNYLAHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  NRSGK  + L    EI++ +     + ++IL  T  G+ + FPI  +     
Sbjct: 612 KGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  + L     
Sbjct: 672 GKGNKIINIPAAKAKAREEVVSHLMALPKGVT 703



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 15/175 (8%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   GD  ++ A                 +      L S   +        +  EG  
Sbjct: 527 GLNYKAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEG-- 584

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +  ++Q  L  S+ G+G      D    NRSGK +         E   ++A  
Sbjct: 585 TSIRQVVMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLP-----ENAEIMAPQ 639

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
            VND  +D+I+ ++++G ++  P+ ++    +  KG  I +         E VVS
Sbjct: 640 AVNDLESDEILAITNQGRMLLFPIKDLPQLGKG-KGNKIINIPAAKAKAREEVVS 693


>gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 752

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 243/742 (32%), Positives = 385/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ + M+N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 42.6 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|289178865|gb|ADC86111.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 890

 Score =  516 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 274/831 (32%), Positives = 416/831 (50%), Gaps = 97/831 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +   + Y+
Sbjct: 17  EEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYM 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 77  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMATN+ T
Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG +  R 
Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGVVTTRS 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +DR    R+V
Sbjct: 256 ATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIV 315

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 316 IELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRRGVIRR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R           
Sbjct: 376 RSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR----------- 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++ +E + L   I E   IL
Sbjct: 425 ---------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITELERIL 469

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
            S + L G++  E+        TPRRT +++   D                         
Sbjct: 470 GSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHA 529

Query: 527 ------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
                               +   I  E  V+ +S  G + R+ +          +G   
Sbjct: 530 ENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDALTIW--AKRGAHT 587

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILS 623
                +D +  L    T       +S G +    V  LP            G     +L+
Sbjct: 588 EKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLT 647

Query: 624 LN------QGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
                    GER+   +   +    D+++     V   T++G V+R        ++    
Sbjct: 648 STESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMDSWSI 707

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           I   L   DE+L       ++  +  +     + +    +R   GR + G+ GI LA G 
Sbjct: 708 ID--LKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRTAAGMAGIHLADGC 764

Query: 734 QVISMAIVLHA-----DADYDERICYMKHMSAQRRL-ISGDTEEITSLKND 778
            V+S A+V HA     DA++D+    +   S    L ++GD + +   +N 
Sbjct: 765 TVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDALPGTENG 815



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 76/261 (29%), Gaps = 37/261 (14%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +   V+  +  G + R  +       + G    K +  D I+S+       D  L T  
Sbjct: 555 EDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALVTSA 614

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ V                                 +V   + +    +     + A  
Sbjct: 615 GRMVLAH------------------------------VVELPNLEVTGHLSLTGGIEATE 644

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
            L S ++ +    +   +           +   +   +   +  G  KR +       + 
Sbjct: 645 LLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMD- 703

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
                   D+   +E   L+     +D+D+ + VS   +L+      +R   R   G+  
Sbjct: 704 ---SWSIIDLKDGDE---LLVAADAHDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAG 757

Query: 883 FSTAKDERVVSVERIRESEIV 903
              A    V+S   +  +++ 
Sbjct: 758 IHLADGCTVLSCAVVAHADVE 778


>gi|226323236|ref|ZP_03798754.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
 gi|225208426|gb|EEG90780.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
          Length = 746

 Score =  516 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 260/763 (34%), Positives = 414/763 (54%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   EESQIIRTEYSELMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD +DF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKDIIDFVPNFDETEKEPAVLPVRIPNLLLNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE+VD   A + N DI    LM+ I+GPDFPTG +++ +  +   Y TG G I I
Sbjct: 182 PTHNLGEIVDAVKAYMKNNDITTKQLMKYIKGPDFPTGGIVVNKDDLAEIYETGTGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G R++IV++EIPY +        L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVDVEEIKGGRKKIVISEIPYTMIGAGIGKFLNDVCNLVETKKTSDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A  D ++N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIEVKRDADVDNLINMLYKKTRLEDTFGVNMLAVADGRPEVLGLKRIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K +D+  +  GL  A   +D ++ I+R S +   A+  L   +      
Sbjct: 362 LATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSSSIRDAKECLTTGATEKIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K        S  +      +  ++ Q +AILE+RL +L GL  + +  E  +    I + 
Sbjct: 422 K--------SKRSEKMASMLRFTDRQAQAILEMRLYKLIGLEIEALMKEHETTLANIAKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  +L ++K E    R+T+I      + +E+ +  +++V+ +   GY
Sbjct: 474 EDILNNYDSMAQVIIDDLDALKKEYAVKRKTKIENAEEAVFEENKVQEQEVVLLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  SVY   R             +     +        +  F+S G +++ KV  LP
Sbjct: 534 AKTVDGSVYERNREAA----------DKENKYILRCMNTGKLCLFTSDGKMHQIKVMDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  +     +    D+        +F TK G +++   S+F Q
Sbjct: 584 YGKFRDKGFPIDNVSNFDSTKEEIVYLC---DDRELFFSKFLFVTKQGMIKKVAGSEF-Q 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   D ++S+       D++L T+ G  +RFP   +     + +VGVRG+
Sbjct: 640 VTKRTIAATKLQDEDALVSIRPIRDVQDVVLMTENGFVLRFPAEEVSEK-KKGAVGVRGM 698

Query: 728 SLAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISG 767
            L K D V  + +          + E+   +  +   +R  +G
Sbjct: 699 KLQKNDSVEEVYLFEEGTESKVIFHEKEVTLNRLKRAKRDGTG 741



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C + +L     L V+++G  K+ +  +F+++ R          +K+ +  ALV++ P+
Sbjct: 609 YLCDDRELFFSKFLFVTKQGMIKKVAGSEFQVTKR------TIAATKLQDEDALVSIRPI 662

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            D   ++L+++ G ++R P  E+    +   GV      K++ V  V    E
Sbjct: 663 RDVQDVVLMTENGFVLRFPAEEVSEKKKGAVGVRGMKLQKNDSVEEVYLFEE 714


>gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
 gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
          Length = 824

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 290/877 (33%), Positives = 461/877 (52%), Gaps = 104/877 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S S+  EM++SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + + KC
Sbjct: 12  KIISTSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RMAQD+S R  L+ G GNFGS+D DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETR 131

Query: 135 LQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A+  +  ++G++ +DF  N+D S QEP+VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 132 LSSIANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++DG +A+++ P++  + L +II GPDFPTG  I+   GIK+AY  G+G I +RGV
Sbjct: 192 NLGELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQTEGIKDAYRDGKGIIRVRGV 251

Query: 254 SHIEKTSGDREQ------IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IEK +  +++      +++TE+PYQVNKAA +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 252 VSIEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A   ++L +LY+ T+L+  F   M+AL   +P++ +L  +L+ F++FRE+
Sbjct: 312 MRVVIELKRDAVTKLVLKELYKKTALEHNFGAIMLALVDNQPQQLSLRSLLEEFLSFREK 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+    L   +D++ +L GL IA+ANLD+V+ I+  S +   A+ +  +        
Sbjct: 372 TLNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKE------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + L+E Q   IL + + RLTGL R  I  E   L I++ + 
Sbjct: 425 -------------------LGLNEKQANGILAMPMRRLTGLERKKIETEYEELQIKVNKL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT------ 541
             +L +R   L  +K+EL S+K +    RRTRI+       +     + D+         
Sbjct: 466 EILLKNRKEFLAELKKELRSLKKKYGDKRRTRIIGKDTTKINNIETQKLDVPKQPILQSK 525

Query: 542 --VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST-----HTSVLFFSS 594
             +SH      + LS         +G       ++    +  ++ +        ++  + 
Sbjct: 526 KKISHTPKQLNLNLSKDSILEMTYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIVITD 585

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y  K+  +P    Q+    LI++L  N  +   +++       +  N  ++  T  
Sbjct: 586 NGKAYPIKILDIPYIDVQS--TFLISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTNQ 643

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAI 713
           G ++R +LS+   +   G   MKL + D +  +    +E++I++    G+ +RF + +  
Sbjct: 644 GKIKRIQLSELNSLTNRGLSLMKLKNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNEE 703

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                RN+ G +   L   ++++    +   D                            
Sbjct: 704 IPVMNRNTQGEQAFRLRSKEEIVGCINMNKKDD--------------------------- 736

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     IL VS+ G+GKR +  D RI+     G +A    
Sbjct: 737 --------------------------ILLVSKLGYGKRLNVLDLRITKLGDIGTQALKF- 769

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            I++  +L+ +   +D   I ++++K  +I   + E+
Sbjct: 770 -IHQADSLLGIKVSSDIRNINILTNKNRVITTEITEV 805



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           ++ + +L ++ +G  KR    +   ++NR         + K+     L  +  V + D+I
Sbjct: 632 VENRNLLLLTNQGKIKRIQLSELNSLTNRG------LSLMKLKNDDFLKYISFVKEEDEI 685

Query: 854 ILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++    G L+R  +   EI + +R T+G   F     E +V    + + + +
Sbjct: 686 VIAITSGRLLRFQMKNEEIPVMNRNTQGEQAFRLRSKEEIVGCINMNKKDDI 737


>gi|294786988|ref|ZP_06752242.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315226629|ref|ZP_07868417.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|294485821|gb|EFG33455.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315120761|gb|EFT83893.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 906

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 276/911 (30%), Positives = 431/911 (47%), Gaps = 140/911 (15%)

Query: 4   HIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           H  S D    ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M Q
Sbjct: 7   HAASYDPRTVKQKIVDTPLGEEMSTSFLAYAYSVIYARALPDARDGLKPVQRRIIYQMGQ 66

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           M +  +K Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQD+++RL L++G GNFGS+D 
Sbjct: 67  MNLTPDKPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQDFAMRLPLVDGHGNFGSLD- 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL  AA  + + + ++TVDF PNYD   QEP VL +  PN+LVNG  GI
Sbjct: 126 DGPAASRYTEARLAPAALGMNESINEETVDFAPNYDNKLQEPTVLPSAIPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+ THNL EVV G   ++ +PD   D LM  I GPD P G +I+GR GIK AY 
Sbjct: 186 AVGMATNMITHNLAEVVAGAKYLMAHPDATTDDLMHYIPGPDLPGGGIIMGREGIKEAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRGS   R  +HIE  +  ++ IVVTE+P+ V    +LE+I++ V+ K++  I+   D 
Sbjct: 246 SGRGSFSTRATTHIENVTARKKAIVVTELPFMVGPEKVLERISDGVKNKKLDGISGAIDL 305

Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR    R+VIE+K G     +L QL++YT L+  F++N VAL G +P    L  +L  +
Sbjct: 306 TDRHNGTRLVIEIKTGFDPHAVLGQLFKYTPLEDSFTINNVALVGGRPHTMGLKELLDVW 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EV+ RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S N ++A+  LM   
Sbjct: 366 IQHRREVITRRSQYRKRKAEERLHLVDGLLLALIDIDEVIEVIRSSDNADSAKTRLMA-- 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L E+Q + IL+LRL RLT + R ++ +E + L 
Sbjct: 424 ------------------------VFDLDEIQAQYILDLRLRRLTKMSRIELESERDDLQ 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--------------- 526
             I E  +IL+S  R   ++ + +  V  +  TPRRT +++   +               
Sbjct: 460 RAIAELDEILASDQRRDAVVIESMDHVVRDYGTPRRTVLLDVDEEGAYSPVPAAELGQEV 519

Query: 527 -----------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                                          +   +  +   + +S    + R   +   
Sbjct: 520 DASIKQGEALSSALATASLAASAPIPASAGSEGLKLEDKPCAIILSADRLIGRASATALD 579

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--------IG 609
             R         V +  D +  +   ST  S    +S G +       LP        + 
Sbjct: 580 LWRS---RPLDAVRQPHDQIRTVIPSSTLASYGIVTSAGRLVLAHTADLPLLHLDPDKLS 636

Query: 610 SPQARGKALINILSLNQ------GERITTIMPFP-----EDESSWNNLY----------- 647
                G  + ++L+  +      GE+  T++P       E ES   +             
Sbjct: 637 LSAQGGVRVDDLLTHTESTEAVAGEKAITVIPLAGSKEHEGESEDKDKDESKEKAAGGQD 696

Query: 648 ----VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               +   T  G V+R  +     ++    I   L   D ++     T  + ++  +   
Sbjct: 697 GPAPLAIGTARGIVKRWNMDSPTTMDSWSIID--LKDDDSLVFAAPATDADRLVFISSDS 754

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             + +    +R   GRN+ G+ GI LA G +V++ A+V         ++ ++       +
Sbjct: 755 SLLTYTADNVRP-QGRNAGGMGGIKLADGSRVLAFAVVPAG------QLAWVPAQEEGDQ 807

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
             SG      +   ++                     LT ++ G  K T    +    R+
Sbjct: 808 AASGAVVVTVAGDAEA---------------------LTGTDNGSAKVTPLELYPTKGRN 846

Query: 824 GKGIRATDVSK 834
             G+R+    K
Sbjct: 847 TGGVRSQRFLK 857



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 73/217 (33%), Gaps = 18/217 (8%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+I +V   +      + T  G+ V    + + +           +SL+    V    ++
Sbjct: 594 DQIRTVIPSSTLASYGIVTSAGRLVLAHTADLPLLHLDPDK----LSLSAQGGVRVDDLL 649

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H ++           +         + E     K++S  +    ++    L +      
Sbjct: 650 THTESTEAVAGEKAITVIPLAGSKEHEGESEDKDKDESKEKAAGGQDGPAPLAIG----- 704

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             + +G  KR +       +       +  +  + +  +LV   P  D D+++ +S   +
Sbjct: 705 --TARGIVKRWNMDSPTTMD-------SWSIIDLKDDDSLVFAAPATDADRLVFISSDSS 755

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           L+    + +R   R   G+     A   RV++   + 
Sbjct: 756 LLTYTADNVRPQGRNAGGMGGIKLADGSRVLAFAVVP 792


>gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 752

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/728 (32%), Positives = 376/728 (51%), Gaps = 58/728 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E N L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLARLEEMKIRGEQNELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S  G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAFGDDRRSPLHEREEAKAMNEHDMLPSEPVTIVLSQSGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKSGDSFKAAVKGKSNQPVAFIDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMEADDQK------LLMASDAGYGFICTFNDLVSRN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALISLPDNAHVMPPLIIENESDMLLAITAAGRMLMFPVSDLPELSKGKGNKIISIP 675

Query: 729 LAKGDQVI 736
            A+  + +
Sbjct: 676 SAEAAKGV 683



 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +    +S  +    +  +   N++D 
Sbjct: 587 MEADDQKLLMASDAGYGFICTFNDLVSRNRAGKAL----ISLPDNAHVMPPLIIENESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++ ++  G ++  PV+++   S+  KG  I S    E    V+
Sbjct: 643 LLAITAAGRMLMFPVSDLPELSKG-KGNKIISIPSAEAAKGVD 684


>gi|302386254|ref|YP_003822076.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196882|gb|ADL04453.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 755

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 260/773 (33%), Positives = 415/773 (53%), Gaps = 29/773 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E          + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M
Sbjct: 1   MSEKQGQKRGNMSEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +K + K ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS+
Sbjct: 61  SELRLNHDKPHRKSARIVGDTMGKYHPHGDSSIYETLVVMSQIFKKGMPLVNGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           +GD  AA RYTE RL+K A  +       TVDF PNYD + +EP VL  R PN+L+NG  
Sbjct: 121 EGDGAAAMRYTEARLEKFAEEVYLRDLDKTVDFIPNYDETEKEPEVLPVRVPNLLINGAE 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+T+IP+HNLGEV+D   A IDNPDI +  LME + GPDFPTG +I  ++ + + 
Sbjct: 181 GIAVGMSTSIPSHNLGEVIDAVQAYIDNPDISICKLMEYLPGPDFPTGGIIANKSDLPSI 240

Query: 241 YATGRGSIVIRGVSHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVD 295
           Y TG G I +RG   +E      D++++V+TEIPY +        L  +A+LV  K++ D
Sbjct: 241 YETGAGKIKLRGKIEVELGKRKADKDKLVITEIPYTMVGSGINKFLVDVADLVESKKLSD 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + D+ ++S+++G R+V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L 
Sbjct: 301 VVDISNQSNKEGIRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIADGRPETLNLK 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           GILK ++ F+ +   R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+ 
Sbjct: 361 GILKNYLDFQYKNATRKYQTLLEKELEKKEIKEGLIKACDIIDMIIAVLRGSKNLKDAKN 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM    + S+I   +   ++ +       T++ +E Q  AILE+RL +L GL    +  
Sbjct: 421 CLMT--GDISNINFKVKGFEEDA------KTLHFTEKQATAILEMRLYKLIGLEILQLEK 472

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E      +I E   ILS+R  +  +IK +L  +K E  TPRRT I +G   + DE  I  
Sbjct: 473 EYKETLAKIAEYEKILSNRKFMDKVIKDDLDQIKKEYATPRRTLIEDGKEAVYDETAIPV 532

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            ++   +   GY K +  + Y   +   +  +  V+                 +  F++ 
Sbjct: 533 SEVTFVMDRFGYCKILDKATYDRNKETIETENPYVVN----------CLNTDKICIFTNT 582

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +++ K   +P G  + +G  + N+   +        +   E          +FATK  
Sbjct: 583 GNLHQVKAQDIPGGKLRDKGTPIDNLSKFDGTREEIVYLCHAE---GLKGRKFLFATKQA 639

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+     +F   NR+   A KL   D +L V+    + D++L T  G  +RF    I  
Sbjct: 640 LVKLVPGEEFETNNRT-VAATKLPDDDMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIPE 698

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADAD-YDERICYMKHMSAQRRLISG 767
              +N+ GVRGI L +G+ + ++ ++       Y E+  ++  +   +R   G
Sbjct: 699 M-KKNARGVRGIKLTQGEALEAVHLIGEDPVIYYKEKEVHLNRLKIGKRDGKG 750



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 770 EEITSLKNDSSVEGNISE--ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           ++ T + N S  +G   E    C    LK +  L  +++   K     +F  +NR     
Sbjct: 600 DKGTPIDNLSKFDGTREEIVYLCHAEGLKGRKFLFATKQALVKLVPGEEFETNNR----- 654

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
                +K+ +   L+ V  VN    ++L +  G  +R    EI    +  +GV      +
Sbjct: 655 -TVAATKLPDDDMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIPEMKKNARGVRGIKLTQ 713

Query: 888 DERVVSVERIRESEIV 903
            E + +V  I E  ++
Sbjct: 714 GEALEAVHLIGEDPVI 729


>gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 756

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 383/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D ++N L+  T L+  + VNM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPV----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMRQFSLSETQAEAILELKLRHLAKLEEMKIRGEQDDLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASDRKLSNLIKKEIQADAQAYGDERRSPLHERGEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PITLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    +  +      ++++L+  T  G+ + FP+S +   +    
Sbjct: 613 NDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAITAAGRMLLFPVSDLPQLSKGKG 672

Query: 722 VGVRGIS---LAKGDQVISMAIVLHADAD 747
             +  IS    A+G   ++   +L   A 
Sbjct: 673 NKIVSISSADFAEGKDRLTWLYLLPPQAS 701



 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK I        +   A   +    D++ 
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITL----PDNAKAFAPIEIKGDDNL 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV+++   S+           K  ++VS+     +E  D
Sbjct: 647 LMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSISSADFAEGKD 688


>gi|154506274|ref|ZP_02043012.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
 gi|153793413|gb|EDN75833.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
          Length = 747

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 268/763 (35%), Positives = 413/763 (54%), Gaps = 32/763 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y 
Sbjct: 4   ESQIIRTEYSDVMRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYTE
Sbjct: 64  KCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTE 123

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L DL KD +DF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+IP
Sbjct: 124 ARLTKFTQEAYLADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+D   A + N  I    LM+ I+GPDFPTG +++ +  +   Y TG+G I IR
Sbjct: 184 THNLGEVIDAVKAYMKNDAITTKQLMKYIKGPDFPTGGIVVNKDDLPEIYETGQGKIKIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E   G ++Q+V+TEIPY +        L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 244 GKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGI 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E+
Sbjct: 304 RIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKAIIEHHVDFQFEL 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ K LL K  D+  V  GL  A   +D ++ I+R S + + A+  L Q        K
Sbjct: 364 TTRKYKTLLAKELDKKEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQGITENIKFK 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I        +      +  +E Q  AILE+RL +L GL  + ++ E  +    I    
Sbjct: 424 SQI--------SKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIARYE 475

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+    +  +I +EL + K E    RRT I      + +E  +  ++++  +   GY 
Sbjct: 476 DILNHYDSMATLIMEELDAFKKEYGRKRRTAIENAEAAVFEEKKVEEQEVIFLMDRFGYA 535

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V +SVY   +      +  V+                 +  F+  G +++ KV  LP 
Sbjct: 536 KTVDVSVYERNKEAADSENKYVVN----------CLNTGKICLFTDTGKMHQIKVMDLPY 585

Query: 609 GSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+ +  +  E+I TI     D        ++FATK G ++R   S+F Q
Sbjct: 586 GRFRDKGVPIDNVSNYSSSEEQIVTIC----DAQQIAFEKLLFATKQGMIKRVDGSEF-Q 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   D ++ V    +  +I+L T+ G  +RF  + I     + +VGVRGI
Sbjct: 641 VAKRTIAATKLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLTAEIPEK-KKGAVGVRGI 699

Query: 728 SLAKGDQVISMAIVLHADAD---YDERICYMKHMSAQRRLISG 767
            L K D++  + +          Y E+   +  +   +R   G
Sbjct: 700 KLQKTDELEQIHLFEEGTDTKVKYGEKEVTLNRLKLAKRDGVG 742



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   ++  + +L  +++G  KR    +F+++ R          +K+ E  AL+ V  V +
Sbjct: 612 CDAQQIAFEKLLFATKQGMIKRVDGSEFQVAKR------TIAATKLQEEDALIHVGMVQE 665

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N  I+L +  G  +R    EI    +   GV      K + +
Sbjct: 666 NQNIVLQTRDGYFLRFLTAEIPEKKKGAVGVRGIKLQKTDEL 707


>gi|255284072|ref|ZP_05348627.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265417|gb|EET58622.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 748

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 260/760 (34%), Positives = 407/760 (53%), Gaps = 32/760 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ENTQQQIIRTEYSEIMQKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++   L L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RLQK      L DL K+ V F PN+D + +EP VL  R PN+LVNG  GIAVGM T
Sbjct: 122 YTEARLQKVTQEAFLADLDKNVVPFVPNFDETEKEPEVLPVRLPNLLVNGADGIAVGMVT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D  +A I N +I  + LM+ I+GPDFPTG +++ +  + + Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVIATIKNSNITTEELMQYIQGPDFPTGGIVVNKDELTDIYKTGMGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            IRG   +EK    +E +V++EIPY +   N    L  +A LV  K+  DI D+ ++S +
Sbjct: 242 RIRGKVDVEKGKNGKESLVISEIPYTMIGANIGKFLNDVAALVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL++ A  + ++N LY+ T L+  FSVNM+A++  +PE   L  I++  + F+
Sbjct: 302 DGIRIVLELRKNADTNNLINMLYKKTRLEDTFSVNMLAVSDGRPETLGLKKIIEHHIDFQ 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  R+ + LL K + +  +  GL  A   +D ++ I+R S + E A+  L+       
Sbjct: 362 FEVNTRKYQTLLEKEQAKREIQEGLIKACDVIDLIIEILRGSKSREQAKECLVNGVTEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +      ++ ++ Q  AILE+RL +L GL    ++ E +     I 
Sbjct: 422 RFK--------SRTSKKQAEQLHFTDAQATAILEMRLYKLIGLEIAALQKEHDETVKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              D+L++   +   I +EL S+K E   PR+T +  G   + +E  +   ++V  +   
Sbjct: 474 RYEDLLNNYGSMAKQIIKELQSLKKEYAVPRKTVVENGEEAVYEEKKLEEMEVVFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY + V    Y   +      S            +        +  F+  G  +  +V  
Sbjct: 534 GYARTVDAQTYERNKETADAES----------RYVIPCMNTDKICLFTDTGSQHLIRVLD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P G  + +GK + N  + +   E I  +    E          VF T  G V++ + S+
Sbjct: 584 VPFGKFRDKGKPIDNFCNYSSAREAIVYV----ESLQRVKMSLFVFGTAQGMVKQVEGSE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    A KL   D ++SV    +    +  T+   C+R  I  I     + ++GV
Sbjct: 640 FD-VAKRTIAATKLQEGDRLISVHRMDEAETAVFKTEHDICLRIRIGDI-PLKKKGAIGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RGI L +GD+V +M    + D + D+ I Y +      RL
Sbjct: 698 RGIRLGEGDRVEAM---YYPDGEKDKTILYKEKEIRLDRL 734



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  K+    +F ++ R          +K+ E   L++V  +++ +  +  ++    +
Sbjct: 627 TAQGMVKQVEGSEFDVAKR------TIAATKLQEGDRLISVHRMDEAETAVFKTEHDICL 680

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERV 891
           R+ + +I +  +   GV      + +RV
Sbjct: 681 RIRIGDIPLKKKGAIGVRGIRLGEGDRV 708



 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 73/248 (29%), Gaps = 15/248 (6%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  R      + +   +           E   V  C   +
Sbjct: 514 AVYEEKKLEEMEVVFLMDRFGYARTVDAQTYERNKETA--------DAESRYVIPCMNTD 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I L T  G      +  +     R+                ++  V            +
Sbjct: 566 KICLFTDTGSQHLIRVLDVPFGKFRDKGKPIDNFCNYSSAREAIVYVESLQRVKMSLFVF 625

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                  +++   + +        + ++          +   E  +   +E     R   
Sbjct: 626 GTAQGMVKQVEGSEFDVAKRTIAATKLQEGDRLISVHRMDEAETAVFK-TEHDICLRIRI 684

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D  +  +   G+R   + + + + A+   +P  + D+ IL  +K     + ++ +++A 
Sbjct: 685 GDIPLKKKGAIGVRGIRLGEGDRVEAM--YYPDGEKDKTILYKEK----EIRLDRLKVAG 738

Query: 875 RATKGVVI 882
           R TKG  +
Sbjct: 739 RDTKGTKL 746


>gi|331084710|ref|ZP_08333798.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410804|gb|EGG90226.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 746

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/763 (32%), Positives = 412/763 (53%), Gaps = 30/763 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ +     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   NEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQD+   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 ESRLAKITQEVYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D   A + N +I  + L+  ++GPDFPTG +++ +  + + Y TG G I +
Sbjct: 182 PTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVVNKDDLPSIYETGTGKIKL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           RG   +E   G ++++V++EIPY +        L  +  LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADGRPETMGLRQIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ R+ K LL K   +  +  GL  A   +D ++ I+R S + + A+  L+  +      
Sbjct: 362 LMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVENITF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K                  +  +E Q  AILE+RL +L GL  + +  E       I++ 
Sbjct: 422 KTAASKK--------KAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  EL   K      RRT I  G   + +E+ +  +D+++ +   GY
Sbjct: 474 EDILNNYDSMTNVIIDELEGYKKAYARERRTVIENGKEAIYEENKVEEQDVILLLDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +      +            +        V  F++ G +++ KV  +P
Sbjct: 534 AKTVDVATYERNKEAADSEN----------KHIVPCKNTGKVCIFTNTGKMHQVKVSDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +   + N+ + +  +     +     E    +  ++F T+   +++    +F+ 
Sbjct: 584 YGKFRDKSVPIDNLGNYDSAQEEIVYLCA---EEELKDAKLLFVTRQSMLKQVAGEEFL- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +++    A KL   DE++++    +E +I+L T+ G  +RF +S +     + +VGVRG+
Sbjct: 640 VSKRTTAATKLQEADEVVAIIKVLEEQNIVLQTEGGYFLRFLLSEVPEK-KKGAVGVRGM 698

Query: 728 SLAKGDQVISMAIV---LHADADYDERICYMKHMSAQRRLISG 767
            L K D++  + +    +     Y E+   +  +   +R   G
Sbjct: 699 KLQKSDRIEQIYLFADGVDTKGSYQEKEVSLNRLKLNKRDGKG 741



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             C E +LK+  +L V+ +   K+ +  +F +S R       T  +K+ E   +VA+  V
Sbjct: 609 YLCAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKR------TTAATKLQEADEVVAIIKV 662

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +   I+L ++ G  +R  ++E+    +   GV      K +R+
Sbjct: 663 LEEQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRI 706


>gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218]
          Length = 757

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/752 (32%), Positives = 393/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP   L  LM+ ++GPD+PT A I+     ++  Y TGR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V H E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +S++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGISDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+EL +  ++    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPLVEREEAKALTERDLMPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHEVDCESLNYKAGDNYLAHACGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNVAEGTSIRQVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  NRSGK  + L    EI++ +     + ++IL  T  G+ + FPI  +     
Sbjct: 612 KGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++V+S  + L     
Sbjct: 672 GKGNKIINIPAAKAKAREEVVSHLMALPKGVT 703



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +         E   ++A   VN
Sbjct: 588 RQVVMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLP-----ENAEIMAPQAVN 642

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
           D  +D+I+ ++++G ++  P+ ++    +  KG  I +         E VVS
Sbjct: 643 DLESDEILAITNQGRMLLFPIKDLPQLGKG-KGNKIINIPAAKAKAREEVVS 693


>gi|225572726|ref|ZP_03781481.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039899|gb|EEG50145.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
          Length = 748

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 264/770 (34%), Positives = 410/770 (53%), Gaps = 30/770 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E+   I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   QEKNDQIIRTDYAEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGQTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RLQK      L DL K+ VDF PN+D + +EP VL  + PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLQKLTQEVYLADLDKNVVDFIPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+DG  A + N DI    LM  I+GPDFPTG +++ +  ++  Y TG G I
Sbjct: 182 SIPPHNLGEVIDGVKAYMKNNDITTKGLMRYIKGPDFPTGGIVVNQDELRKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG   IEK  G R  +V+TEIPY +   N    L  +A LV  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEIEKAKGGRLHLVITEIPYTMIGANIGKFLNDVATLVESKKTTDILDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+EL+R    D ++N LY+ T L+  F VNM+A+   +PE  +L  +++  V F+
Sbjct: 302 EGIRIVLELRRDTDVDNLVNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQVVEHHVEFQ 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+ + LL+K  ++  V  GL  AV  +D ++ I+R S N +  ++ L        
Sbjct: 362 FEIANRKYRTLLDKELEKKEVQEGLMKAVDVIDLIIEILRGSKNQQQVKKCLTTGETEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +  +   +  +E Q  AILE+RL RL GL  + +  E  +    I 
Sbjct: 422 RFK--------SKASQKAAAQLRFTERQATAILEMRLYRLIGLEMEALLKEHEATLEHIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  D+L++   +   I  EL +VK E    RRT +      + +E  I   ++   +   
Sbjct: 474 KYEDLLNNYDSMAQAIMNELDAVKKEFGRKRRTALENAQEAVFEEKKIEEMEVWFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK +    Y   +      S            LF       +  F+  G ++  KV  
Sbjct: 534 GYVKTIDRQTYERNKENACSESKY----------LFSCMNTDRICIFTDAGRMHAVKVLD 583

Query: 606 LPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G  + N+ + N Q E+I  +    E + S     ++FAT+   +++    +
Sbjct: 584 IPLVKFRDKGVPVDNLSNYNSQEEQILYVAGMEELKHSQ----LLFATQKAMLKQVSGQE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +   +A KL   D+++ V        ++L +  G  +RF    +     + ++GV
Sbjct: 640 FD-VTKRTIMATKLTEGDKVIFVAPSDAMEYVVLQSTQGYFLRFLKQEVPEK-KKGAIGV 697

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           RG+ L + DQ+   A +L    +Y       K    + RL   DT+   S
Sbjct: 698 RGMRLGEQDQL-EHAYLLEGHTEYTIEYKEKKLTLNRLRLAKRDTKGTKS 746



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +LK   +L  ++K   K+ S  +F ++ R    I AT +++ ++   ++ V P +  + +
Sbjct: 617 ELKHSQLLFATQKAMLKQVSGQEFDVTKR---TIMATKLTEGDK---VIFVAPSDAMEYV 670

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L S +G  +R    E+    +   GV      + +++
Sbjct: 671 VLQSTQGYFLRFLKQEVPEKKKGAIGVRGMRLGEQDQL 708


>gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM
           4541]
 gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541]
          Length = 751

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 383/749 (51%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +L   TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           +IP HN  EV    VA+++ P ++LD +M+ I GPD+PT A I+     I+  Y  GRGS
Sbjct: 183 DIPPHNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  +      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWEKEDGN-----AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++  L+  T L+  + VN+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPSVKGLVEILNEWITY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FNISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
            E   IL S +RL  +IK+E+ +        RR+ +   E    + + + +  E + V +
Sbjct: 449 DELQAILGSEARLNTLIKKEIQADAKAYGDDRRSPLQEREEAKALSEHEILPSEPITVVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      S +  +  D   +     ++ + +F  S G  Y   
Sbjct: 509 SDMGWV--------RSAKGHDIEPSNLSYKAGDSFKEAARGKSNQAAVFLDSTGRSYSVD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   L+L  G  I  ++  PE++        + A+  G       
Sbjct: 561 PLELP--SARSQGEPLTGKLTLPPGATIEHVLMAPEEQK------YLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +D +  N++GK  + L    ++LS       +E+ +L  TK G+ + FP+S +   +   
Sbjct: 613 NDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLAITKAGRMLLFPVSNLPQLSKGK 672

Query: 721 SVGVR---GISLAKGDQVISMAIVLHADA 746
              +    G   A G+ ++   +V+   +
Sbjct: 673 GNKIINITGAQAASGEDLLVWLMVVPPQS 701


>gi|113953878|ref|YP_729244.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113881229|gb|ABI46187.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
          Length = 820

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 291/831 (35%), Positives = 431/831 (51%), Gaps = 60/831 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + S+++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERVQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL + +H   LD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLARISHEGLLDEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++ NPD+  + ++++I GPDFPTG  +L  +G++  Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVQNPDLSENEVLKLIPGPDFPTGGEVLLGSGVRETYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHIEEVHPGKGKHRRNAVIVTELPYQLSKAGWIEKLAEHVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R TSLQS F   ++AL   +P++ TL  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPETVLTDLQRRTSLQSNFGAILLALVDGRPQQLTLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+A+L +V+ +I+ + +   AR  LM        
Sbjct: 363 LTIIRRTNHALRKTEDRLEVVEGLTTALASLQQVIAMIQEARDAAKARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  A+L + L RLTGL ++ +R E + L  E + 
Sbjct: 417 --------------------FDLSERQADAVLAMPLRRLTGLEQESLRKEADDLRKERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + QEL  +K    TPRRTR+VEG   +  E    +           
Sbjct: 457 LTLLLENRDQLLDALIQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPNAELQRRQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                  S    Q  G          G+      +   D          +     +L  +
Sbjct: 517 LDALPSDSRLLIQDDGQVKIVSPQLLGRLHLNDPIPMGDEPSPALISLPIQPPPRLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFA 651
             G V     W           + L   L   +G+ + +++P   PED  +     +   
Sbjct: 577 VSGRV-ALVRWEFAGQQQGTLERFLPTAL---EGDEVVSLLPLPNPEDLVANETKSLGLL 632

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G  +R  L D  +++      +KL     + +   C    D+ + + +G+ +R    
Sbjct: 633 TSDGRFKRLPLKDIQELSGRAATVLKLKEGVSLKAALICQDGADVAVISDIGRVLRLQAE 692

Query: 712 AIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA-----QRRLI 765
                  G+ + G   + L  G+Q+++                    +        R   
Sbjct: 693 ETNLPVMGKLAQGPITMRLLPGEQLVTAIAGHAERPTTILLASQTGRLQWLELTCIRSCK 752

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            GD  EI    +  S  G+   ER     L +  I  V+  G   R    +
Sbjct: 753 RGDLGEIGWEFDSESTSGS---ERIAAACLADSLIGVVTSSGRHGRLKVNE 800



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 77/208 (37%), Gaps = 18/208 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               +  + + +      R  ++         S  +  + +    +++++ +        
Sbjct: 527 LIQDDGQVKIVSPQ-LLGRLHLNDPIPMGDEPSPALISLPIQPPPRLLAVTV-------- 577

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             R+  ++   A ++  + +    T+L+ D  V           +  + + +  ++  G 
Sbjct: 578 SGRVALVRWEFAGQQQGTLERFLPTALEGDEVVSLLPLPNPEDLVANETKSLGLLTSDGR 637

Query: 809 GKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
            KR    D + +S R      A  V K+ E  +L A     D   + ++SD G ++R+  
Sbjct: 638 FKRLPLKDIQELSGR------AATVLKLKEGVSLKAALICQDGADVAVISDIGRVLRLQA 691

Query: 868 NE--IRIASRATKGVVIFSTAKDERVVS 893
            E  + +  +  +G +       E++V+
Sbjct: 692 EETNLPVMGKLAQGPITMRLLPGEQLVT 719


>gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
 gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
          Length = 824

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 282/756 (37%), Positives = 421/756 (55%), Gaps = 52/756 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + S+++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L+++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG VA+I  P++    L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLSSGLRDTYLVGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A    +L  L R T+LQS F   ++AL   +P + +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQPRQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQEARDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL  L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELEELQAERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + QEL  +K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LRLLLDNRDQLLDAMVQELKGLKKRFSTPRRTRLVEGGDALMAERAASQRPNTELLRQQA 516

Query: 547 YVKRVPLSVYRAQRRGGKGRSG------VVMRDEDFVTD-------LFIVSTHTSVLFFS 593
                  +    Q  G            + + +   V D       +  +     +L  S
Sbjct: 517 LEALPADARLLIQADGQVKVMSPPVLGRMHLSEPCAVGDHPSPAQVILPIEPSPRLLGVS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V     W      P +  K L + L    G+ +  I+  P  + +     +   + 
Sbjct: 577 ASGRV-ALVRWEFAGQQPGSLEKFLPSGL---DGDPLIAILELPVGDGT--EFSLGLLSS 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  L+D + ++      +KL     + S   C + +D++L + +G+ +R P++  
Sbjct: 631 DGRFKRLPLADVLDLSGRATSVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLRLPVNDS 690

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                GR + G   + L  G++++    +  A+ D 
Sbjct: 691 VLPKMGRLAQGPMTMRLLPGEELVGSLSIDVAETDP 726



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 804 SEKGFGKRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR    D   +S R      AT V K+ E  +L +     ++  ++LVS  G L
Sbjct: 629 SSDGRFKRLPLADVLDLSGR------ATSVVKLKEGLSLCSAVICREHSDLVLVSSMGRL 682

Query: 863 IRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R+PVN+  +    R  +G +       E +V    I  +E  
Sbjct: 683 LRLPVNDSVLPKMGRLAQGPMTMRLLPGEELVGSLSIDVAETD 725



 Score = 41.4 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 4/167 (2%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD +I++  +   D   +  +  +      +RL   D  +++                 
Sbjct: 605 DGDPLIAILELPVGDGT-EFSLGLLSSDGRFKRLPLADVLDLSGRATSVVKLKEGLSLCS 663

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +  +   ++ VS  G   R    D       R  +G     +    E+   +++    
Sbjct: 664 AVICREHSDLVLVSSMGRLLRLPVNDSVLPKMGRLAQGPMTMRLLPGEELVGSLSIDVAE 723

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSV 894
            +  ++LVS KG + R+ +  +R   R   G++    + D + V  +
Sbjct: 724 TDPTLLLVSRKGQMTRIDLTPLRRCQRGDLGIMAVVLSADEDSVAGL 770


>gi|78211563|ref|YP_380342.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9605]
 gi|78196022|gb|ABB33787.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9605]
          Length = 822

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 287/854 (33%), Positives = 443/854 (51%), Gaps = 57/854 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  + +++G+DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG VA+I  P++  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLVALIRKPELSDEKLLELIPGPDFPTGGEVLISSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A    +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ FRE
Sbjct: 303 GMRVVVELRRDADPGKVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQTFLDFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEANDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL+ L  + + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELDELRAKRQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL  +K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLDNRDQLLDAMVTELKGLKKRFSTPRRTRLVEGGDALMAERAASQRPNTELLRQQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                       Q  G          G+          D       +  +     +L  S
Sbjct: 517 LAALPGDGRVLIQADGQVKIFTPQVLGRLHLNDPCPVGDAPSPARVILPIEPPPRLLAVS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G + + + W      P    + L   L    G+ I +++  P    + + L +   + 
Sbjct: 577 AGGRIAQVR-WEFAGQQPGPIDRFLPTGL---DGDPIVSLLSLPS--QNIDELSLGLLSS 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  +S+ + ++      +KL    E+ +   C  +  ++L + +G+ +R  I+  
Sbjct: 631 DGRFKRLPVSEVVDLSGRATSVLKLKEGVELNNAVICRNQGTLVLISDIGRLLRLRINEE 690

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                GR + G   + L  G+Q++       A       + + +     R   SG     
Sbjct: 691 SLPLMGRLAQGPMTMRLLPGEQIVGAVCTEQA-----PLMLFSQRGMIGRIDCSGMRYNQ 745

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                  +V+ +   +R   +      +   + K    R +  +  IS    K +    +
Sbjct: 746 RGDLGSMAVQVDAESDRLVGVSAGPGLVGVRTSKDRHGRLNPDNITISKPGDKLMEKMSL 805

Query: 833 SKINEIGALVAVFP 846
                I  ++    
Sbjct: 806 QSGETIVEVINAIQ 819



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (8%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + E  +  +S  G  KR    +   +S R      AT V K+ E   L       +   +
Sbjct: 620 IDELSLGLLSSDGRFKRLPVSEVVDLSGR------ATSVLKLKEGVELNNAVICRNQGTL 673

Query: 854 ILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVS 893
           +L+SD G L+R+ +NE  + +  R  +G +       E++V 
Sbjct: 674 VLISDIGRLLRLRINEESLPLMGRLAQGPMTMRLLPGEQIVG 715



 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 60/167 (35%), Gaps = 8/167 (4%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD ++S+  +   + D +  +  +      +RL   +  +++             E   
Sbjct: 605 DGDPIVSLLSLPSQNID-ELSLGLLSSDGRFKRLPVSEVVDLSGRATSVLKLKEGVELNN 663

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +   +  ++ +S+ G   R    +    +  R  +G     +    +I   V      
Sbjct: 664 AVICRNQGTLVLISDIGRLLRLRINEESLPLMGRLAQGPMTMRLLPGEQIVGAV----CT 719

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSV 894
           +   ++L S +G + R+  + +R   R   G +      + +R+V V
Sbjct: 720 EQAPLMLFSQRGMIGRIDCSGMRYNQRGDLGSMAVQVDAESDRLVGV 766


>gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591]
 gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591]
          Length = 758

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/735 (33%), Positives = 380/735 (51%), Gaps = 61/735 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
             G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV    +A+ID PD  L+AL+  ++GPDFPT A +I  R  I+  Y +GRGS+ +
Sbjct: 186 PHNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEIRKMYESGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDESD +    
Sbjct: 246 RAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTR 300

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D ++N L+  T L+  + +NM  +    +P    L  IL  ++AFR +
Sbjct: 301 LVLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+                
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 407 ---------------LMAKFGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+E+          RR+ + E      M + D    E + + +S +
Sbjct: 452 QALLASERKMNTLLKKEIQEDAKAYGDDRRSPLHERGEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R+ +      SG+  +  D         ++  V+F  S G  Y      
Sbjct: 512 GWV--------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+L  G  I  ++       + +N  ++ A+  G       +D 
Sbjct: 564 LP--SARGQGEPLTGKLTLPPGATIEQVLM------AADNQRLLLASDAGYGFICTFADL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  NR GK  + L     +L      +++++LL  T  G+ + FP++ +   +      +
Sbjct: 616 VARNRVGKAVLTLPDHARVLPPLELQRDDELLLTITAAGRLLLFPVADLPALSKGKGNKI 675

Query: 725 RGI---SLAKGDQVI 736
             I    LA GD  I
Sbjct: 676 VSIPAAQLASGDDRI 690



 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR GK +         +   ++    +  +D+
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLP-----DHARVLPPLELQRDDE 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L ++  G L+  PV ++   S+           K  ++VS+
Sbjct: 646 LLLTITAAGRLLLFPVADLPALSK----------GKGNKIVSI 678


>gi|169350468|ref|ZP_02867406.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
 gi|169292788|gb|EDS74921.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
          Length = 849

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 274/876 (31%), Positives = 444/876 (50%), Gaps = 92/876 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G    K Y K A+  
Sbjct: 7   MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLATKPYRKSAKTI 66

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG+ ++YDA+ R++QDW +R  LI+ QGN GS+D DP AA RYTE RL   
Sbjct: 67  GNVIGNYHPHGDTSVYDAMVRLSQDWKMRAPLIDMQGNNGSIDNDPAAAMRYTEARLSPI 126

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 127 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 186

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  I + +  L+ +ME I+GPDFPTGA++ G+ GI NA+  G+G +++R  + I +
Sbjct: 187 IDATIYRIKHSNCSLEKIMEFIKGPDFPTGAIVEGKEGILNAFKHGKGKVIVRSKTEIIE 246

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                 +IV++EIPY+VNKA ++ KI E+   + +  I ++RDESDR G R+VI+LK+  
Sbjct: 247 EKN-MNKIVISEIPYEVNKAELVRKIDEIHFNRNLEGIIEVRDESDRNGLRIVIDLKKDI 305

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S    LN LY+ T LQ  ++ NMVA+   +P    ++ IL  ++  + +VV R + Y LN
Sbjct: 306 SVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGILDILDGYIDHQIDVVTRSSIYDLN 365

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+DR H++ GL  A++ LD+VV+ IR S +   A++ LM +                  
Sbjct: 366 KAKDRKHIVEGLIKAISILDDVVKTIRESKDKSDAKKNLMAK------------------ 407

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE Q  AI+ L+L RLT      + NE   L  +IK    IL S   L 
Sbjct: 408 --------YEFSEKQAEAIVMLQLYRLTNTDIKTLENENEELNEKIKYLNTILDSDEVLR 459

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +I  +L ++K +   PR + I + + +  ++++  I+ ED+ ++++  GY+KR+     
Sbjct: 460 KVIIDQLKNIKKKYPMPRLSMIRDKIQEVKIDEKAMILSEDVNISITRDGYIKRISNRSI 519

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +A  +   G+     ++ D++  ++  +T   +L FS  G      V ++     +  GK
Sbjct: 520 KASEKTPFGK-----KENDYLVSMYKANTLDHLLLFSDAGNYLFIPVHKIEEFKWKDPGK 574

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIA 675
            +  ++ ++  E+I   +   +       LYV+ ATK+G ++R  L DF     S     
Sbjct: 575 HVSYLVKMDSSEKIIASILVKDFNL---PLYVMIATKNGQIKRTLLKDFEVTRYSKPLKC 631

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L + D+++ V+    +  I+LTTK G    +    + +     ++G++ I+L K D++
Sbjct: 632 IGLKNGDKVVDVKLTNNDQGIILTTKKGYGALYSEQEVSIVGI-KALGIKAINL-KDDEL 689

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +S+      D   D  +  +      +R                                
Sbjct: 690 VSLD---TFDPMVDHSLVLISDSGGIKR-------------------------------- 714

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                               D +  NR+ KG+      K  +   +     V++N QI++
Sbjct: 715 ----------------IKISDIKPCNRATKGVMLFKNLKT-KTTYVKKALIVDNNQQIMI 757

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             +  T++   VN+    S   K   +    KD+ +
Sbjct: 758 TLNNQTVVEFKVNDYHNMSLEQKFSSLVKLNKDQYI 793


>gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6]
 gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
 gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6]
 gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
          Length = 761

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/752 (32%), Positives = 391/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP   L  LM+ ++GPDFPT A +I   + ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D ++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  ++    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNTLLKKEIRADAEKFGDDRRSPLVVREEAKALTERDLMPNEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+++         Q        G+  +  D         ++   +   S G  Y 
Sbjct: 508 VLSEKGWIRHAKGHEVDCQ--------GLSYKAGDSYLAHACGKSNQQAVLLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++  G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNITPGSSIRQVI-MGEEEQLW-----LIGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  NRSGK  + L    E++  S       +DIL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDILAITNQGRMLMFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++++S  I L   A 
Sbjct: 672 GKGNKIINIPAAKAKAKEEILSHLIALPKGAS 703



 Score = 45.7 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      D    NRSGK + +      N      +  
Sbjct: 585 SSIRQVIMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSL---PENAEVMTPSAV 641

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
              DND I+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 642 LDLDNDDILAITNQGRMLMFPIKDLPQLGKG-KGNKIINI 680


>gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 751

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 249/794 (31%), Positives = 399/794 (50%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPS 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E ++L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +       G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L +  +++        ++N +   T  G+ + F IS +           
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGNKI 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K +   
Sbjct: 680 IGIPGERVASREEYVTDLAVIAQGATL--------VLHAGKRTLSLKPEDLEHYKGERGR 731

Query: 782 EGNISEERCQELKL 795
            GN      Q +  
Sbjct: 732 RGNKLPRGFQRVDA 745



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  +   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NGAKVILPRPVP 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 689


>gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae]
          Length = 751

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 257/800 (32%), Positives = 385/800 (48%), Gaps = 64/800 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG  TV + PN+DG+  EP  L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           +IP HN  EV    VA+++NP  DL+ LM+ I  PD+PT A I+  +  I+  Y TGRGS
Sbjct: 183 DIPPHNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDIQKIYQTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V  I     D    V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 IRLRAVWEI-----DDGHAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++  L+  T L+  + VN+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWLLF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     L+ R    
Sbjct: 358 RRETVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKAV---LVAR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  +ILEL+L  L  L    +R E + L  E 
Sbjct: 411 ----------------------FALSETQAESILELKLRHLAKLEEFKLRGEQDDLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   IL S  RL  +IK+E+ +        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQAILGSERRLNTLIKKEIETDAQTYGDDRRSPLKERIEAKAMNEHDILPSEPVTIIL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      + +  +  D         T+  V+F  S G  Y   
Sbjct: 509 SVMGWV--------RSAKGHDIDPTNLNYKAGDGFCSAARGKTNQPVVFLDSTGRSYSLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  I  ++   E++        + A+  G       
Sbjct: 561 PLDLP--SARGQGEPLTGKLALPPGATIEHVLTAAEEQK------YLLASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRN 720
           SD +  N++GK  + L S  ++L+      E  + +L  TK G+ + FP+S +   +   
Sbjct: 613 SDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLAITKAGRMLIFPVSELPQLSKGK 672

Query: 721 SVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              +  IS    A  D ++   + L   +         K       L     E     K 
Sbjct: 673 GNKIINISAAQSASRDDLLVWLMFLQPQSSITLYFGKRKLKLNPEDLQKYRAER--GRKG 730

Query: 778 DSSVEGNISEERCQELKLKE 797
            S   G  S ER +      
Sbjct: 731 SSLPRGLQSIERIEVTPPSN 750



 Score = 41.8 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-- 852
            +EQ  L  S+ G+G   +  D    N++GK +             ++A   VN+  Q  
Sbjct: 593 AEEQKYLLASDAGYGFICTFSDLVAKNKAGKALITLP-----SNAKVLAPLEVNNEQQDL 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           ++ ++  G ++  PV+E+   S+  KG  I + +
Sbjct: 648 LLAITKAGRMLIFPVSELPQLSKG-KGNKIINIS 680


>gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 752

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I+ R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 42.6 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163]
 gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163]
          Length = 756

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 252/815 (30%), Positives = 402/815 (49%), Gaps = 69/815 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRGS
Sbjct: 183 DIPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D ++N L+  T L+  + VNM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPV----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMRQFSLSETQAEAILELKLRHLAKLEEMKIRGEQDDLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ S        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLSNLIKKEIQSDAQAYGDDRRSPLHERSESKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D    +    ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAVAKGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PISLP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L+      ++++L+  T  G+ + FP+S +   +    
Sbjct: 613 NDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAITAAGRMLLFPVSDLPQLSK--- 669

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
                    KG++++S++    A+        Y+    A   L  G  + +         
Sbjct: 670 --------GKGNKIVSISSADFAEGKDRLTWLYLLPPQASVTLYFGKRKLVLRPNELQKY 721

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
           +G    +      L+    + V         SS +
Sbjct: 722 QGERGRKGTLLRGLQRIDRIEVDAPQQVNTGSSEE 756



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK I        +   AL  +    D++ 
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITL----PDNAKALTPIEIKGDDNL 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV+++   S+           K  ++VS+     +E  D
Sbjct: 647 LMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSISSADFAEGKD 688


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 277/774 (35%), Positives = 415/774 (53%), Gaps = 74/774 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVKC 74
           +  + + +  +  YL +A++VI  RA+PD+RDGLKPV RRIL+ M   + +  + +Y K 
Sbjct: 4   VEVIPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEVMGKYHPHG+AAIY+A+ RMAQD+SLR  L++G GNFGS+DGD  AA RYTE R
Sbjct: 64  ATIVGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+  A  LL++L + TV  RPN+DG+  EPVVL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 124 LRPLAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           LGEV+D  + +ID P+  L+ ++E  I+GPDFPTG  +L  R  +   Y TG G I +RG
Sbjct: 184 LGEVIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E     + +IV+T IPY + KA ++EKIAE +   ++  ++D+RDES  +  R+V+
Sbjct: 244 EYKLE----GKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDESTDE-VRIVL 298

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFVAFRE 366
           EL+RGA  +  +  L+R+T LQ+ F VN+  L          P +  L+ +L+AF+ FR 
Sbjct: 299 ELRRGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRM 358

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVVVRR +Y L +   R H+L G       LDE +RIIR + +   A + LM R      
Sbjct: 359 EVVVRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L +VQ  AILE +L +L+ L  + IR EL     +  E
Sbjct: 413 --------------------FQLDDVQADAILETKLYKLSRLEIEAIRQELEEKERQAAE 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L+  +   G+I++EL ++K +    RRT I   +   +   E  IV ED+ V V+ 
Sbjct: 453 LRALLADEAARWGLIREELKAIKKQFADARRTVIAGPDEGFEYNQEAYIVDEDVYVIVTR 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKR          R       + +R+ D V  +   ST  +V FF++ G  Y  ++ 
Sbjct: 513 DGWVKRQ---------RSYTDVQSIRVREGDTVGWVLPGSTRATVGFFTNYGRCYTTRID 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------------DESSWNN 645
            LP       G  +  +   +  ER+  ++ F E                    E     
Sbjct: 564 SLPST--TGYGDPVQKLFDFSDRERVVGVVVFDERALPRPVPEPEVEPALFENGEQEAPR 621

Query: 646 LYVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           ++VV  T+ G   R  +  F +   ++G++ M+L+  DE+L VE    + ++ L ++ G 
Sbjct: 622 VHVVAVTRKGQTLRIPIDGFREPSTKNGRLFMRLEKGDEVLGVEVAAGDENVCLASREGY 681

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            + FP+  I       + GV  + L +GD+V+   +   A    +      +  
Sbjct: 682 VLIFPVHQIPPVKS-AAKGVIAMRLGRGDEVLGFTLASAAREGLEVETSRGRRE 734



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 93/267 (34%), Gaps = 41/267 (15%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  T+ G V+R       Q + +   ++++   D +  V   +    +   T  G
Sbjct: 503 DEDVYVIVTRDGWVKR-------QRSYTDVQSIRVREGDTVGWVLPGSTRATVGFFTNYG 555

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +C    I ++    G      +    +  ++V+ + +                       
Sbjct: 556 RCYTTRIDSLPSTTGYGDPVQKLFDFSDRERVVGVVVF---------------------- 593

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNR 822
               D   +     +  VE  + E   QE       ++ V+ KG   R     FR  S +
Sbjct: 594 ----DERALPRPVPEPEVEPALFENGEQE--APRVHVVAVTRKGQTLRIPIDGFREPSTK 647

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +G+        ++ +   ++ V     ++ + L S +G ++  PV++I     A KGV+ 
Sbjct: 648 NGRLFM-----RLEKGDEVLGVEVAAGDENVCLASREGYVLIFPVHQIPPVKSAAKGVIA 702

Query: 883 FSTAKDERVVSVERIRESEIVDEAEST 909
               + + V+       +    E E++
Sbjct: 703 MRLGRGDEVLGFTLASAAREGLEVETS 729


>gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath]
 gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str.
           Bath]
          Length = 744

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/728 (32%), Positives = 365/728 (50%), Gaps = 61/728 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               + + D  + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++G+    K  K 
Sbjct: 6   NYERIPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSKPKKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D     AA RYTE 
Sbjct: 66  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL +L   TVD+ PN+DG+ +EP +L AR PN+L+NG  GIAVGMAT+IP H
Sbjct: 126 RLTPYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMATDIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EVV+ C+ +ID P+  ++ L   IRGPDFP  A +I  R  +   Y TG G++ +R 
Sbjct: 186 NLREVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGAVRLRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E  +     IVVT +PYQV+ A ++E+IA  ++ K++  + DLRDESD +    ++
Sbjct: 246 RYELEDGN-----IVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHENPTRLV 300

Query: 313 ELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
            + +    +V  +++ L+  T L+  + VN+  +    +P+   L  IL  +++FR E V
Sbjct: 301 IMPKSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNGRPQVKNLREILTEWLSFRTETV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L+K   R H+L GL +A  ++DEV+ IIR    P+     LM R         
Sbjct: 361 RRRLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPKPV---LMTR--------- 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q  AILELRL  L  L    IR E  +L  E      
Sbjct: 409 -----------------FGLTDLQAEAILELRLRHLARLEEIKIRGEQEALEQERARLER 451

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
            L SR+ L  +IKQEL    ++    RR+ IV  +    ++    I  E + V +S  G+
Sbjct: 452 TLGSRAELDALIKQELRQDAEKFGDARRSPIVARQASQALDTTALIASEPVTVVLSEKGW 511

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +        R+ +      + +  R  D      +  +     F  S G  Y   V  LP
Sbjct: 512 I--------RSAKGHEVDPATLSYRAGDGFLCAALGRSTQPAYFLDSTGRSYSLAVHDLP 563

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S + +G+ L   L+   G     ++   E++      + + AT  G     +L +   
Sbjct: 564 --SARGQGEPLTGRLNPPPGAIFVAVLAGSEED------WYLLATDGGYGFLVQLGELGS 615

Query: 668 INRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            NRSGK  + +    +++          + +   +  G+ + +P   I         G +
Sbjct: 616 KNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGRLLVYPAEEIPRL--NKGKGSK 673

Query: 726 GISLAKGD 733
            I +   D
Sbjct: 674 LIQIPPAD 681


>gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
 gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A
 gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
          Length = 744

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 278/801 (34%), Positives = 433/801 (54%), Gaps = 74/801 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  + I +E++ +Y+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+  +K 
Sbjct: 2   ENRENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GE +GKYHPHG+ A+Y+AL RMAQD+++R  LI GQGNFGS+DGDP A  RY
Sbjct: 62  FKKSARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   A  +L D+ KDTVDF+PN+D +  EP VL +++PN+L NG  GIAVG+AT+I
Sbjct: 122 TEAKLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV +  V +  NP I +D +MEI++GPDFPTG VI     +K  Y TGRG I +
Sbjct: 182 PPHNLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +G +H+EK  G RE+IV+TEIPYQVNKA +++KIA+ VR  +I +I+D+RDE+D++G R+
Sbjct: 242 KGKAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELKR A  + +L +LY+YT L+  F VN+V L   +P+   +  +L+ F+  R EV++
Sbjct: 302 VVELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+KY L K +DR H++ GL  A+  +D+++  IR S +   AR  LM+           
Sbjct: 362 RRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +A+L+LRL RLT L R+ +  E   L  +I+    +
Sbjct: 412 ----------------FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKIEYYKKL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++S    + +  +E   +  +    RRT I  V+ + +      ++++  ++ V  L   
Sbjct: 456 VASEGERIKVFIEETEELVKKYGDKRRTFIGGVKEVKEGSITVAVLQDGSIIPVEELPLE 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K                           V ++  V     +   S+ G VY     +   
Sbjct: 516 KA-------------------------PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ 550

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  +           ++ E+I                 ++ ATK G V++  L++F   
Sbjct: 551 GSKVSL---------KSREEKIVGAFI-----REKFGNRLLLATKKGYVKKIPLAEFEYK 596

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + G   +KL   DE++S+ +   E  ILL TK G+  RF +  +   +   + GV+GI 
Sbjct: 597 AQ-GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPP-STPGARGVQGIK 654

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D+   + I      + +  +  +      +++   +  +       + V G     
Sbjct: 655 LEKNDETSGLRI-----WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTL 709

Query: 789 RCQELKLKEQFILTVSEKGFG 809
                  +E  +L  ++ G  
Sbjct: 710 VDLIPIKEEVELLITTKNGKA 730



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 83/519 (15%), Positives = 165/519 (31%), Gaps = 65/519 (12%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVAN-------------LDEVVRIIRFSPNPE 411
           RE +V+    Y +NKA     +   +                   +  VV + R +   E
Sbjct: 254 RERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVVELKRDAKGEE 313

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             ++             +L+ LID     +       L     +  LE+ L R +     
Sbjct: 314 VLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKT---LLREFIKHRLEVILRR-SKYFLK 369

Query: 472 DIRNEL---NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++ L     L   I    DI+  R R      +    + +E          +    + 
Sbjct: 370 KVQDRLHIVEGLLKAINFIDDIIE-RIRRSKDASEARNYLMEEFGLS-----EKQAQAVL 423

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           D        +          +      Y  +    +G    V  +E          T   
Sbjct: 424 DLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEE----------TEEL 473

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQ----ARGKAL-INILSLNQGERITTIMPFPEDESSW 643
           V  +      +   V  +  GS        G  + +  L L +   +  I+  P  E   
Sbjct: 474 VKKYGDKRRTFIGGVKEVKEGSITVAVLQDGSIIPVEELPLEK-APVVNILRVPFTEG-- 530

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               +   +  G V     S  +Q     K+++K      + +       N +LL TK G
Sbjct: 531 ----LFLVSNRGRVYWIAGSQALQ---GSKVSLKSREEKIVGAFIREKFGNRLLLATKKG 583

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
              + P++         + G+  I L +GD+V+S+A    +  D    + + K     R 
Sbjct: 584 YVKKIPLAEFEY----KAQGMPIIKLTEGDEVVSIA----SSVDETHILLFTKKGRVARF 635

Query: 764 LISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
            +          +    ++   ++E     +   E ++L ++ KG  K+ S  +   +NR
Sbjct: 636 SVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNR 695

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             KG   +          LV + P+ +  ++++ +  G 
Sbjct: 696 GVKGTEVSGTKDT-----LVDLIPIKEEVELLITTKNGK 729



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L  ++KG+ K+    +F       +G+    +++ +E   +V++    D   I+L 
Sbjct: 573 GNRLLLATKKGYVKKIPLAEFEYK---AQGMPIIKLTEGDE---VVSIASSVDETHILLF 626

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           + KG + R  V E+  ++   +GV      K++ 
Sbjct: 627 TKKGRVARFSVREVPPSTPGARGVQGIKLEKNDE 660



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 39/291 (13%)

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
           L  ++GERI   +   E+             K+G+ RR  +    ++         L   
Sbjct: 455 LVASEGERIKVFIEETEE----------LVKKYGDKRRTFIGGVKEVKEGSITVAVLQDG 504

Query: 682 ------------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                         ++++        + L +  G+      S     +         +SL
Sbjct: 505 SIIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK--------VSL 556

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              ++ I  A +     +       +       + I     E  +            E  
Sbjct: 557 KSREEKIVGAFIREKFGN----RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVV 612

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                + E  IL  ++KG   R S  +   S    +G++   + K +E   L      N 
Sbjct: 613 SIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGL---RIWNG 669

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +++++ KG + ++   EI   +R  KG  +  T   + +V +  I+E 
Sbjct: 670 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTK--DTLVDLIPIKEE 718


>gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
 gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
          Length = 757

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/749 (31%), Positives = 376/749 (50%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP  L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYADVLLGELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFAISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  ++K+E+ +        RR+ + E      M D D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLLKKEIQADAAAYGDDRRSPLKERAEAKAMSDHDIVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPTGLNYKAGDSFRAAARGMSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++  PE +       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEQVLMAPEHQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D I  NR+GK  + L    + L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLIAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I         D+++ + ++    +
Sbjct: 673 NKIVSIPAPDAAAGKDRLVWLFVLPPQTS 701



 Score = 41.8 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  + Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAPEHQKLLMASDAGYGFVCTFNDLIAKNRAGKTMITLPENAK----ALPPLEIYGPDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 647 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016]
 gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016]
          Length = 761

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/752 (32%), Positives = 391/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP   L  LM+ ++GPDFPT A +I   + ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D ++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM R  
Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+  ++L S  RL  ++K+E+ +  ++    RR+ +V  E    + + D +  E + V
Sbjct: 448 ERKKLEELLGSERRLNTLLKKEIRADAEKFGDDRRSPLVVREEAKALTERDLMPNEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+++         Q        G+  +  D         ++   +   S G  Y 
Sbjct: 508 VLSEKGWIRHAKGHEVDCQ--------GLSYKAGDSYLAHACGKSNQQAVLLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++  G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHTLP--SARGQGEPITGRLNITPGSSIRQVI-MGEEEQLW-----LIGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  NRSGK  + L    E++  S       +DIL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDILAITNQGRMLMFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  AK    ++++S  I L   A 
Sbjct: 672 GKGNKIINIPAAKAKAKEEILSHLIALPKGAS 703



 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      D    NRSGK + +      N      +  
Sbjct: 585 SSIRQVIMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSL---PENAEVMTPSAV 641

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
              DND I+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 642 LDLDNDDILAITNQGRMLMFPIKDLPQLGKG-KGNKIINI 680


>gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586]
 gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586]
          Length = 758

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 245/746 (32%), Positives = 382/746 (51%), Gaps = 61/746 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
             G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV    +A+ID PD  L+AL+  ++GPDFPT A +I  R  I+  Y +GRGS+ +
Sbjct: 186 PHNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEIRKMYESGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +    
Sbjct: 246 RAVWRKEDGS-----VVITSLPHQVSGARVLEQIASQMRAKKLPMLDDLRDESDHENPTR 300

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R    D+  ++N L+  T L+  + +NM  +    +P    L  IL  ++AFR +
Sbjct: 301 LVLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDGRPAVKGLREILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+                
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 407 ---------------LMAKFGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+E+          RR+ + E      M + D    E + + +S +
Sbjct: 452 QALLASERKMNTLLKKEIQEDAKAYGDDRRSPLHERGEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R+ +      SG+  +  D         ++  V+F  S G  Y      
Sbjct: 512 GWV--------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+L  G  I  ++       + +N  ++ A+  G       +D 
Sbjct: 564 LP--SARGQGEPLTGKLTLPPGASIEQVLM------AADNQRLLLASDAGYGFICTFADL 615

Query: 666 IQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  NR GK  + L     +L   E    ++ +L  T  G+ + FP++ +   +      +
Sbjct: 616 VARNRVGKAVLTLPDNARVLPPLELQRDDDLLLTITAAGRMLLFPVADLPALSKGKGNKI 675

Query: 725 RGI---SLAKGDQVISMAIVLHADAD 747
             I    LA GD  I   + +   + 
Sbjct: 676 VSIPAAQLASGDDRILWLMAIAPQSS 701



 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR GK +         +   ++    +  +D 
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLP-----DNARVLPPLELQRDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 646 LLLTITAAGRMLLFPVADLPALSK----------GKGNKIVSI 678


>gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617]
          Length = 758

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 389/747 (52%), Gaps = 61/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N 
Sbjct: 3   DLTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ + 
Sbjct: 243 VRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLIF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE+Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FDISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
                IL+S  ++  ++K+EL +  D     RR+ +   E    + + + I  E + + +
Sbjct: 449 AHLEAILASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHELIPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SQSGWV--------RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++   E +       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGAVVEQVLMADETQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           S+ +  NR+GK  + L S  ++++       +D+LL  T  G+ + FP+S +   +    
Sbjct: 613 SELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVSELPQLSKGKG 672

Query: 722 VGVRGISLAK---GDQVISMAIVLHAD 745
             +  I  A+   G+  ++  ++L  +
Sbjct: 673 NKIVSIPSAEAASGEDKLAWLLLLTPE 699



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  + Q +L  S+ G+G   +  +    NR+GK +             ++    +  ND 
Sbjct: 591 MADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLP-----SNAKVMTPLAIQSNDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L ++  G ++  PV+E+   S+           K  ++VS+     +   D
Sbjct: 646 LLLAITAAGRMLMFPVSELPQLSK----------GKGNKIVSIPSAEAASGED 688


>gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
          Length = 782

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 258/743 (34%), Positives = 398/743 (53%), Gaps = 35/743 (4%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +      E    G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDIVDDPTTPEMPANGELREPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMNRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ LG+D VDFR NYDG  QEP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E++D C+ +I  P+   D L++ + GPDFPTG  I+  +  I
Sbjct: 181 SSGIAVGMATNIPPHNISELIDACIHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    IE     + Q+VVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 241 AQAYRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      ++    +    +V++  +YR + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESAEDIRIILEPKSKNVDPEVLMGLMYRNSDLEVRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDDDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+ +W+    +   +    + Y   + G   LSEVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMRENWDREHPRAFTE----AEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMED 529
            ++L  E     ++L S       I ++L   K +         RRT+  E   + D+  
Sbjct: 474 RDALREERAGLAELLDSEDLQWKKITEQLRETKKQFGKDYEGGSRRTQFAEAGEVEDVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G++        RA          +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F S G  Y      LP G  +  G+ L  ++ L     I  +     +        ++
Sbjct: 586 LVFGSNGRFYTLSAANLPGG--RGMGEPLRLMVDLPNEVEIVDLFIHNPE------GRLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       + +   R GK  + +   DE   +      + + + ++ G+ + F 
Sbjct: 638 VASDAGNGFVCAEKEIVAQTRGGKQVLNVKD-DERAKICIPVSGDHVAVVSENGKFLVFS 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           I  +        V ++  ++A+G
Sbjct: 697 IEEMPELTRGKGVRLQKYNMARG 719



 Score = 44.5 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  +L  S+ G G   +  +     R GK +      +  +I   V+       D 
Sbjct: 629 IHNPEGRLLVASDAGNGFVCAEKEIVAQTRGGKQVLNVKDDERAKICIPVS------GDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS+ G  +   + E+   +R  KGV +  
Sbjct: 683 VAVVSENGKFLVFSIEEMPELTRG-KGVRLQK 713


>gi|253580825|ref|ZP_04858088.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847895|gb|EES75862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 748

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/731 (33%), Positives = 398/731 (54%), Gaps = 29/731 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIPTDYAEVMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGKTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K    +  +DL K+ VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQDVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEVVD   A + N DI +  LM  ++GPDFPTG +++ +  +   Y TG G +
Sbjct: 182 SIPPHNLGEVVDAVKAYMKNNDISVKGLMRYLKGPDFPTGGLVVNKDDLLRIYETGTGKL 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG     K  G R+Q+V+TEIPY +   N    L  IA LV  K+  DI D+ ++S +
Sbjct: 242 RVRGKVETVKLKGGRQQLVITEIPYTMIGANIGKFLNDIASLVENKKATDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V++LKR A  + + N LY+ T L+  F VNM+A+   +PE  +L  +++  V F 
Sbjct: 302 EGIRIVLDLKRDADVENLTNMLYKKTKLEDTFGVNMLAVADGRPETLSLKQVIEHHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V  R+   LLNK +++  +  GL  A   +D ++ I+R S N E  ++ L+       
Sbjct: 362 FDVTTRKYTTLLNKEQEKKEIQEGLIKACDVIDLIIEILRGSKNREQVKKCLVDGVTEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K           +  +   ++ SE Q  AIL++RL +L GL  + ++ +       I 
Sbjct: 422 RFKG--------KSSEKAAQKLHFSEKQAAAILDMRLYKLIGLEIEALQADYAETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +  +I +EL  +K E  T RRT I      + +E  +   ++   +   
Sbjct: 474 IYEDILNNYDSMAEVIMKELDQIKKEYGTKRRTVIENAEEVVYEEKKMEEMEVTFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY++ +  S Y   +      +            +F       +  F+  G ++  KV  
Sbjct: 534 GYMRTIDKSAYERNKEAANAENKY----------VFNCMNTDKICIFTDNGKMHSIKVAD 583

Query: 606 LPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G    N+ + +   ER+  + P     +S     ++F T     +    ++
Sbjct: 584 IPLVRFRDKGTPADNLSNYDSAQERMLYVAPL----ASVKENTLLFVTAASMCKLVSGAE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    R+  ++ KL   D ++ V +  +   ++  ++ G  +RF    I     + S+GV
Sbjct: 640 FDVAKRT-IVSTKLAEEDSLIFVGSADEMEQVVFQSEGGYFLRFQKQDISAM-KKTSIGV 697

Query: 725 RGISLAKGDQV 735
           RG+ LA+GD++
Sbjct: 698 RGMKLAEGDKL 708



 Score = 51.1 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 77/227 (33%), Gaps = 54/227 (23%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              I++S     K  +  E   V  C   + I + T  G+     ++ I +   R+  G 
Sbjct: 536 MRTIDKSAYERNKEAANAENKYVFNCMNTDKICIFTDNGKMHSIKVADIPLVRFRD-KGT 594

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
              +L+  D                ER+ Y+  ++                         
Sbjct: 595 PADNLSNYD-------------SAQERMLYVAPLA------------------------- 616

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     +KE  +L V+     K  S  +F ++ R          +K+ E  +L+ V
Sbjct: 617 ---------SVKENTLLFVTAASMCKLVSGAEFDVAKR------TIVSTKLAEEDSLIFV 661

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              ++ +Q++  S+ G  +R    +I    + + GV     A+ +++
Sbjct: 662 GSADEMEQVVFQSEGGYFLRFQKQDISAMKKTSIGVRGMKLAEGDKL 708


>gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 752

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 752

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 243/742 (32%), Positives = 385/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  YLL K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYLLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 752

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
 gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
          Length = 758

 Score =  514 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/743 (33%), Positives = 381/743 (51%), Gaps = 61/743 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
             G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV    VA+ID PD  LDAL+  ++GPDFPT A +I  R  I+  Y +GRGS+ +
Sbjct: 186 PHNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYESGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDESD +    
Sbjct: 246 RAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTR 300

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D+++N L+  T L+  + +NM  +    +P    L  IL  ++AFR +
Sbjct: 301 LVLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+                
Sbjct: 361 TVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 407 ---------------LMAKFGLSDTQAEAILELKLRHLAKLEEMKIRGEQDDLAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  ++  ++K+E+          RR+ + E      M + D    E + + +S +
Sbjct: 452 QALLASERKMNSLLKKEIQEDAKAYGDERRSPLHERGEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R+ +      SG+  +  D         ++  V+F  S G  Y      
Sbjct: 512 GWV--------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFMDSTGRSYALDPLT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+L  G  I  ++       + +N  ++ A+  G       +D 
Sbjct: 564 LP--SARGQGEPLTGKLTLPPGATIEQVLM------AADNQRLLLASDAGYGFICTFADL 615

Query: 666 IQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  NR GK  + L     +L   E    ++ +L  T  G+ + FP++ +   +      +
Sbjct: 616 VARNRVGKAVLTLPDNAHVLPPLELQRDDDLLLTVTAAGRMLLFPVADLPELSKGKGNKI 675

Query: 725 RGI---SLAKGDQVISMAIVLHA 744
             I    LA GD  I   + +  
Sbjct: 676 VSIPAAQLASGDDRILWLLAIAP 698



 Score = 38.8 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR GK +         +   ++    +  +D 
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLP-----DNAHVLPPLELQRDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L V+  G ++  PV ++   S+           K  ++VS+
Sbjct: 646 LLLTVTAAGRMLLFPVADLPELSK----------GKGNKIVSI 678


>gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/747 (31%), Positives = 387/747 (51%), Gaps = 61/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   DLTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNTA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ + 
Sbjct: 243 VRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++   +    + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE+Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FDISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
                +L S  +L  ++K+EL +  D     RR+ +   E    + + + +  E + + +
Sbjct: 449 AHLEGLLGSERKLNTLLKKELQADSDAYGDERRSPLREREEAKAIGEHELMPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SQSGWV--------RSAKGHDIDPAGLSYKAGDSFLGAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++   + +       ++ A+  G       
Sbjct: 561 PVTLP--SARGQGEPLTGKLTPPPGAVVEQVLMADDTQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L S   +++     + +D+LL  T  G+ + FP+  +   +    
Sbjct: 613 SDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDLLLAITAAGRMLMFPVGDLPQLSKGKG 672

Query: 722 VGVRGISLAK---GDQVISMAIVLHAD 745
             +  I  A+   G+  ++  ++L  +
Sbjct: 673 NKIISIPSAEAASGEDKLAWLLLLTPE 699



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       ++A   ++ ND 
Sbjct: 591 MADDTQKLLMASDAGYGFVCTFSDLVSRNRAGKALLTLPSNAR-----VMAPLAIHRNDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L ++  G ++  PV ++   S+           K  +++S+     +   D
Sbjct: 646 LLLAITAAGRMLMFPVGDLPQLSK----------GKGNKIISIPSAEAASGED 688


>gi|73916130|gb|AAZ92933.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 632

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 256/710 (36%), Positives = 394/710 (55%), Gaps = 85/710 (11%)

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
              V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  + IE T  
Sbjct: 2   VKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKT 61

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE+KR ASA+
Sbjct: 62  GRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASAN 121

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT++   KA 
Sbjct: 122 VILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAE 181

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +                     
Sbjct: 182 ARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK--------------------- 220

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                  LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL+   R+  II
Sbjct: 221 -----FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQII 275

Query: 502 KQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           K EL  VK +    RRT + V  +L +EDED I   D+++T+S+ GY+KR+    + AQ+
Sbjct: 276 KDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQK 335

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     A+G  ++N
Sbjct: 336 RGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVN 395

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G  A+ L  
Sbjct: 396 LLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKD 453

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +GD V+  ++
Sbjct: 454 EDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASL 512

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +   D                                                   E  I
Sbjct: 513 ITDQD---------------------------------------------------EVLI 521

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T    G  KRT + ++    R GKG++   +++ N  G L  +  V  ++ +++++D G
Sbjct: 522 ITEKGYG--KRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTG 577

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 578 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 627


>gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163]
          Length = 758

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 389/747 (52%), Gaps = 61/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N 
Sbjct: 3   DLTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ + 
Sbjct: 243 VRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLIF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE+Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FDISEIQAEAILELKLRHLAKLEEMKIRGEQDELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
                IL+S  ++  ++K+EL +  D     RR+ +   E    + + + I  E + + +
Sbjct: 449 AHLEAILASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHELIPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SQSGWV--------RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++   E +       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGAVVEQVLMADETQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           S+ +  NR+GK  + L S  ++++       +D+LL  T  G+ + FP+S +   +    
Sbjct: 613 SELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVSELPQLSKGKG 672

Query: 722 VGVRGISLAK---GDQVISMAIVLHAD 745
             +  I  A+   G+  ++  ++L  +
Sbjct: 673 NKIVSIPSAEAASGEDKLAWLLLLTPE 699



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  + Q +L  S+ G+G   +  +    NR+GK +             ++    +  ND 
Sbjct: 591 MADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLP-----SNAKVMTPLAIQSNDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L ++  G ++  PV+E+   S+           K  ++VS+     +   D
Sbjct: 646 LLLAITAAGRMLMFPVSELPQLSK----------GKGNKIVSIPSAEAASGED 688


>gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 749

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 123 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 183 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 243 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 298 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 357

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 403

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 404 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 448

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 449 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 507

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 508 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 558

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 559 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 612

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 613 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 672

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 673 SAEAAKGDDGLAHLYVLPPQST 694



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 584 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 639

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 640 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 675


>gi|257054878|ref|YP_003132710.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
 gi|256584750|gb|ACU95883.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
          Length = 827

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 280/837 (33%), Positives = 411/837 (49%), Gaps = 59/837 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +    +T E++ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   N 
Sbjct: 17  DQAGARVFDNPVTTEIEESYLEYAYSVIHSRALPDARDGLKPVHRRILYSMYESGYRPNH 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK +R+ G+VMG+YHPHG+ AIYDA+ R+AQD+S+ + L++G GNFGS D D PAA R
Sbjct: 77  AYVKSSRVVGDVMGRYHPHGDTAIYDAMVRLAQDFSMNVPLVDGHGNFGSPD-DGPAASR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  L+D+LG+DTVDFRPNYDGS QEP VL A +PN+LVNG  GIAVGMATN
Sbjct: 136 YTEARMSSEAMLLVDELGEDTVDFRPNYDGSLQEPSVLPAAFPNLLVNGTSGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE+V     +I++P+  LD LME + GPD PTG  +LG   ++ AY TGRG + 
Sbjct: 196 MIPHNLGEIVAAARWLINHPNASLDKLMEFVPGPDLPTGGQLLGLDQVRKAYETGRGVVR 255

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDRQG 307
           +R  +      G R Q I VTE+PY V    ++E+I E V + KR+  IAD++D +DR+ 
Sbjct: 256 MRAKATTGPIEGSRRQGITVTELPYGVGPEKVIERITEEVNKTKRLTGIADVKDLTDREN 315

Query: 308 -YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             ++VIE K G +   +L  LYR T L+  F +N + L   +P    L  +L+ F+A R 
Sbjct: 316 GTKLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPRTLGLKELLEVFLAHRY 375

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT+Y   K  +R H++ GL  A+ ++D+V+++IR S N + A+  LM+R      
Sbjct: 376 EVVTRRTRYRRRKREERLHLVEGLLKALVDIDKVIKLIRGSENAQAAKEGLMKR------ 429

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+  L RLT   + ++ +E + L  EI E
Sbjct: 430 --------------------FKLSEVQAAYILDTPLRRLTKYDKLELESEQDRLRKEIAE 469

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMV 539
             +IL     L  ++ +EL  V  +   PRRT +++G L                 +   
Sbjct: 470 LTEILDDEKVLKRVVSKELAKVAKDFAVPRRTALIDGDLKEVLAASKPAGPLEVADDPCQ 529

Query: 540 VTVSHLGYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           V +S  G V R       A   +RR G+ R        D +  +   +    VL  ++ G
Sbjct: 530 VILSSTGLVARTAAESEEAVEGRRRSGRAR-------HDAIAAMVHTTARGQVLLVTNRG 582

Query: 597 FVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +K  V  LP+    +       G  +  +  L + ER+  + P    E +  +  +  
Sbjct: 583 RAFKTDVLPLPVLPESSGTVSLRDGVDVRELAPLERDERVVGLAPL--GEQAQGSPGLAL 640

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFP 709
            T+HG V+         +       + L   DE++           +   T     +RF 
Sbjct: 641 GTRHGVVKVCAPDW--PVRSDEFDVITLKDGDEVVGATWLTDGAETLTFVTSQASLLRFD 698

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +R    R   GV GI+L K  +V+    V   DA++ E +         +       
Sbjct: 699 ASLVRPQGLRGG-GVAGINLPKDSEVVFFGAVRTDDAEHGEPMVVTATGETVKVTPLSQY 757

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                          +  E    L       +  +++G        D R        
Sbjct: 758 PAKGRATGGVRAHRFLKGETRLVLAWVGPRPVGSTKRGESVELPEVDPRRDGSGAAH 814



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 99/271 (36%), Gaps = 28/271 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQI---NRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R        +    RSG+        D I ++   T    +LL T
Sbjct: 525 DDPCQVILSSTGLVARTAAESEEAVEGRRRSGRAR-----HDAIAAMVHTTARGQVLLVT 579

Query: 701 KLGQCVRFPI-------SAIRVFAGRNSVGVR-GISLAKGDQVISMAIVLHADADYDERI 752
             G+  +  +        +    + R+ V VR    L + ++V+ +A +           
Sbjct: 580 NRGRAFKTDVLPLPVLPESSGTVSLRDGVDVRELAPLERDERVVGLAPLGEQAQGSPGLA 639

Query: 753 CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +H      A    +  D  ++ +LK+   V G         L    + +  V+ +  
Sbjct: 640 LGTRHGVVKVCAPDWPVRSDEFDVITLKDGDEVVG------ATWLTDGAETLTFVTSQAS 693

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIR-VP 866
             R  +   R     G G+   ++ K +E+    AV   + ++ + ++V+  G  ++  P
Sbjct: 694 LLRFDASLVRPQGLRGGGVAGINLPKDSEVVFFGAVRTDDAEHGEPMVVTATGETVKVTP 753

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++     RAT GV      K E  + +  +
Sbjct: 754 LSQYPAKGRATGGVRAHRFLKGETRLVLAWV 784



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 79/260 (30%), Gaps = 26/260 (10%)

Query: 663 SDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            DF    R+  I   L       +         +   ++ +  G   R    +     GR
Sbjct: 493 KDFAVPRRTALIDGDLKEVLAASKPAGPLEVADDPCQVILSSTGLVARTAAESEEAVEGR 552

Query: 720 NSVG------VRGI--SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
              G      +  +  + A+G  ++          D        +           D  E
Sbjct: 553 RRSGRARHDAIAAMVHTTARGQVLLVTNRGRAFKTDVLPLPVLPESSGTVSLRDGVDVRE 612

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +  L+ D  V G        E       +   +  G  K   + D+ + +         D
Sbjct: 613 LAPLERDERVVGLAP---LGEQAQGSPGLALGTRHGVVK-VCAPDWPVRS------DEFD 662

Query: 832 VSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           V  + +   +V    + D  + +  V+ + +L+R   + +R       GV   +  KD  
Sbjct: 663 VITLKDGDEVVGATWLTDGAETLTFVTSQASLLRFDASLVRPQGLRGGGVAGINLPKDSE 722

Query: 891 VVSVERIRESEIVDEAESTE 910
           VV    +R     D+AE  E
Sbjct: 723 VVFFGAVR----TDDAEHGE 738


>gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVCR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIK----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1]
          Length = 752

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAVIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       SD +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFSDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFSDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 769

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 261/741 (35%), Positives = 397/741 (53%), Gaps = 35/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I   D  E +      +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MNDTIDPVDTPETEITEP--LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  NRLRLSASGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VD+R NYDG  +EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTVVAEAMLEGLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGST 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+ D C+ +I +P+   + L++ + GPDFPTG VI+  +  I  
Sbjct: 179 GIAVGMATNIPPHNVAELCDACLHLIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E       QIVVTEIPYQV K+ ++EK+AE++  K+I  + D+
Sbjct: 239 AYRTGRGSFRLRCKWETEDLGRGMWQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    +    DV++N LYR + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESADDVRIILEPKSKNVDPDVLMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R++V+ RR+++ ++K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFIDHRQDVLKRRSQHRIDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           + +W    ++   +   D      +D    LSEVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 RENWAQEFVRATSE--SDYRSPAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRERD 473

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L  E     D+LS        I ++L   +           RR++  E   + ++  E 
Sbjct: 474 ALMEERANLDDLLSDERLQWAKISEQLRETRKTFGKNYEGGARRSQFAEAGEVEEVPIEA 533

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+V        RA +      S V  +D D    +F   T   +L 
Sbjct: 534 MIEREPITVVCSKMGWV--------RALKGHADLTSKVKFKDGDEARFMFHAETTDRLLI 585

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G  Y      LP G  +  G+ L  ++ L     I  I+    D        ++ A
Sbjct: 586 FGSNGRFYTLGANNLPGG--RGMGEPLRLMVDLPNEAEIVDILIHQPDRK------LLVA 637

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+      +D I   RSGK  + +        V +  + + +    +  + + FP++
Sbjct: 638 STAGDGFIVPENDVIAQTRSGKQVLNVKEGVR-AFVLSPVKGDHLACVGENRKVLAFPLT 696

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR      G
Sbjct: 697 ELPEMG--RGKGVRLQKYKDG 715


>gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 756

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 251/815 (30%), Positives = 400/815 (49%), Gaps = 69/815 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    V +++NP   LD L++ ++GPDFPT A +I  R  ++  Y  GRGS
Sbjct: 183 DIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D ++N L+  T L+  + VNM  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPV----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L  L  L    IR E   L  E 
Sbjct: 407 ------------------LMRQFSLSETQAEAILELKLRHLAKLEEMKIRGEQGDLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ S        RR+ + E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLSNLIKKEIQSDAQAYGDDRRSPLHERGEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAAAKGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PISMP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQP------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    + L+      E+++L+  T  G+ + FP+S +   +    
Sbjct: 613 NDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAITAAGRMLLFPVSDLPQLSK--- 669

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
                    KG++++S++    ++        Y+    A   L  G  + +         
Sbjct: 670 --------GKGNKIVSISSADFSEGKDRLTWLYLLPPQASVTLYFGKRKLVLRPNELQKY 721

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
           +G    +      L+    + V         +S +
Sbjct: 722 QGERGRKGTLLRGLQRIDRIEVDAPQQVDTGNSEE 756



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK I        +   AL  +    +++ 
Sbjct: 591 MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITL----PDNAKALAPIEIKGEDNL 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV+++   S+           K  ++VS+     SE  D
Sbjct: 647 LMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSISSADFSEGKD 688


>gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
 gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
          Length = 781

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 261/744 (35%), Positives = 405/744 (54%), Gaps = 34/744 (4%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++    +D    + G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MSDTQDDTDAPMPQNGEILEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG+
Sbjct: 61  MNRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+   A  +L+ L +D+VDFR NYDG   EP VL A +PN+L NG 
Sbjct: 121 IDGDNPAASRYTEARMTFIAEAMLEGLNEDSVDFRDNYDGRLTEPAVLPATFPNILANGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMATNIP HN+ E++D C+ +I +P  D D L++ + GPDFPTG +I+  R  I 
Sbjct: 181 AGIAVGMATNIPPHNIAELIDACIHLIKSPGADDDTLLKYVPGPDFPTGGIIVEPRDNIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +AD
Sbjct: 241 KAYRTGRGSFRLRCTHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           +RDES      V+    +    DV++N ++R + L+  FS+NM V ++G  P+  ++  +
Sbjct: 301 IRDESAEDIRIVLEPKSKNVDPDVLMNMMFRNSDLELRFSLNMNVLIDGVTPKVCSMKEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V+ RR++Y + K   R  VL G  IA  NLD V+ IIR+  +P++A   L
Sbjct: 361 LRAFLDHRRDVLRRRSEYRMGKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKSA---L 417

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+ +W     +      ++S Y   + G   LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 418 MRENWGLDHPRAY----EESDYVTPAPGEGELSEVQAEAILNMRLRSLRRLEEVELTKER 473

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDE 530
           ++L  E    +++L S       I ++L + K +         RR+R  E   + ++  E
Sbjct: 474 DALREERAGLVELLGSDDLQWSKITEQLRATKKQFGKDYVGGARRSRFAEAGEVEEVPLE 533

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA          +  +D D    +F   T   +L
Sbjct: 534 AMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGARFIFHAETTDRLL 585

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G  +  G+ L  ++ L     I  I+    +        ++ 
Sbjct: 586 VFGSNGRFYTVSAANLPGG--RGMGEPLRLMVDLPNEVEIVDILIHNPEGK------LLV 637

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  GN       D +   R+GK  + +   D    +      + + + ++ G+ + F +
Sbjct: 638 ASSAGNGFICAEKDIVAQTRTGKQVLNVKDDDR-AQICIPVTGDHVAIVSENGKFLVFSV 696

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQ 734
             +        V ++  ++A+G Q
Sbjct: 697 EEMPELTRGKGVRLQKYNMARGKQ 720


>gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 794

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 277/792 (34%), Positives = 422/792 (53%), Gaps = 60/792 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG-VEWNKKYV 72
           +      + +E +  YL YA++VI  RA+PD+RDGLKPV RR+L+GM     +  + KY 
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A++ G +MG+YHPHG+A+IYDAL R+AQD+SLR  L++G GNFGS+DGD  AA RYTE
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTE 154

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           CRL   +  +L +LGK TV FRPNYDG+  EP+V+ +R P +L+NG  GIAVGMATNIP 
Sbjct: 155 CRLAGISGEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPP 214

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           H+LGE+ D   A+I+N ++ +  LM+ ++GPDFPTG  IL  +  ++  Y TG+GS+ IR
Sbjct: 215 HHLGELCDALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIR 274

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E      +QI++T IPY VNK+ ++ KI +LVRE+++  + D+RDES ++  R+V
Sbjct: 275 GEYALEDVKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKE-VRIV 333

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPERFTLIGILKAFVAFR 365
           +E KR AS ++++  LY++T LQ+ F VN+  L          P+R  L  IL+ F+ FR
Sbjct: 334 LEFKRDASPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFR 393

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV +R ++ L + + R H+L G       LDE++RIIR S   + A ++LM R     
Sbjct: 394 FEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLMAR----- 448

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L EVQ  AILE++L +L  L    I+ EL    +E+K
Sbjct: 449 ---------------------FKLDEVQVDAILEMKLYKLARLEILVIQEELKQKRLEVK 487

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTV 542
               IL  + +L G +K EL  +K   +  RRTRI       ++  ++  IV ED  V +
Sbjct: 488 RIEGILKDKRKLWGTVKDELAEIKATYNDKRRTRIGGAGSEEVEFSEDAFIVDEDAHVVL 547

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G++KRV         R  K  S   +R+ D V  +   S  ++++ FS+ G  Y  +
Sbjct: 548 TRDGWIKRV---------REVKDPSTTRLREGDAVMTVLAGSLKSNLVLFSNFGAAYVTR 598

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P       G  +  +   + GERI   +    D        +V  TK G   R  L
Sbjct: 599 FNDVPAS--TGYGDPVQKLFKFDDGERIVGALSL--DSRLPRPQKLVAVTKDGLGLRFPL 654

Query: 663 SDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              +++  RSG+   K    DEI+ V+   +++ + + T+         + +   AG   
Sbjct: 655 EGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCRAAEVNELAGPG- 713

Query: 722 VGVRGISLAKGDQVISMAIVLHADADY-------DERICYMKHMSAQRRLISGDTEEITS 774
            GV  I +  GD+V+    V     D          R   +     +     G   E++ 
Sbjct: 714 KGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSPAKYEVTGRGGKGHEMSR 773

Query: 775 LKNDSSVEGNIS 786
                 V+ +++
Sbjct: 774 KDTVKEVQRSVT 785



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 135/449 (30%), Gaps = 54/449 (12%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            ++IL+  L     +     ++EL  L   +            L  +I+           
Sbjct: 382 LKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRII--------- 432

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY-----RAQRRGGKGRSG 568
             R +   +           + E  V  +  +   K   L +        Q+R    R  
Sbjct: 433 --RASEGKQDAAKKLMARFKLDEVQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIE 490

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
            +++D          +    +    +                    G A    +  ++  
Sbjct: 491 GILKD----KRKLWGTVKDELAEIKAT----------YNDKRRTRIGGAGSEEVEFSEDA 536

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRN-KLSDFIQINRSGKIAMKLDSRDEILSV 687
            I        DE +      V  T+ G ++R  ++ D             L   D +++V
Sbjct: 537 FIV-------DEDAH-----VVLTRDGWIKRVREVKDPSTTR--------LREGDAVMTV 576

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              + +++++L +  G       + +    G      +      G++++    +      
Sbjct: 577 LAGSLKSNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPR 636

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             + +   K     R  + G  E  T      +  G   E    +   ++  +  ++E+ 
Sbjct: 637 PQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERT 696

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +     + +       GKG+    V   + +   +AV P   +  I   + KG  + +  
Sbjct: 697 YATVCRAAEVNELAGPGKGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSP 756

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVER 896
            +  +  R  KG      ++ + V  V+R
Sbjct: 757 AKYEVTGRGGKGH---EMSRKDTVKEVQR 782


>gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
 gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
          Length = 774

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/769 (31%), Positives = 375/769 (48%), Gaps = 77/769 (10%)

Query: 1   MTEHI-----ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +             ++  +  +++ D  + +YL YA++V+ GRA+PD+ DG KPV RR
Sbjct: 1   MDDKTPDFFDEPPSPPDDGNV--LTLGDYAERAYLDYAVSVVKGRALPDVCDGQKPVQRR 58

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQG
Sbjct: 59  ILYAMNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQG 118

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP +L AR P  L
Sbjct: 119 NFGSRDGDGAAAMRYTEARLTPIAQLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFAL 178

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM+++ GPDFP G  I+   
Sbjct: 179 LNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHADLMQLVPGPDFPGGGQIISSD 238

Query: 236 -GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I  AY  GRGS+ +R    IE+ +  + Q+VV E+P   +   +LE+I EL   K   
Sbjct: 239 AEISAAYEVGRGSLKVRARWKIEELARGQWQLVVNELPPNTSCQKVLEEIEELTNPKIKA 298

Query: 295 DIAD------------------LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQ 334
                                 +RDES +     ++   +      +  +  L  +TSL+
Sbjct: 299 GKKTLTQEQANTKKTLLDLLDAVRDESGKDAPVRLVFEPKSRALDQNEFVQSLLAHTSLE 358

Query: 335 SLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S   +N+V + N  +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I 
Sbjct: 359 SNAPLNLVMIGNDGRPAQKGLGAILGEWVGFRQLTVTRRCRHRLGKVDDRIHILEGRMIV 418

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             N+DEV+RIIR S  P+ A                                   LSE Q
Sbjct: 419 FLNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQ 449

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              ILE+RL +L  L +  I  EL  L  E  +  D+L++ S +  ++ +E+     +  
Sbjct: 450 AEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEDLLANESAMKRLLIKEIEGDARQFG 509

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRT I +      +   ++ E + V VS  G+V        RA +  G   +    + 
Sbjct: 510 DDRRTLIQQEKRATFE-ARVIDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKA 560

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +   F   T  +++ + S G V+   V  LP G  +  G  + +++ L  G  +   
Sbjct: 561 GDGLYAAFQCRTPDTLIAWGSKGRVHSVPVQVLPGG--RGDGVPVTSLIELESGTHLMHY 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ- 692
                ++       ++ A+ +G     K+ D I   ++GK  M +D     L+       
Sbjct: 619 FAAGAEQP------LLLASSNGFGFIAKVGDMISRQKTGKAFMTIDEGAVPLAPMPVMPL 672

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              +   +  G+ + F +  ++  +     GV  ++L   + ++    +
Sbjct: 673 ATQVACLSAQGRLLVFGLDEMKTLSA-GGRGVILMALEDKEALVQALAI 720


>gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 760

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 134 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 194 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 254 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 309 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 369 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 415 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 460 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 519 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 570 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 623

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 624 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 683

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 684 SAEAAKGDDGLAHLYVLPPQST 705



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 595 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 651 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 686


>gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
 gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
          Length = 752

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P   + ELM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEP---KPELMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  +     RR+ +   E    M + D +  E + + +S  G+V 
Sbjct: 452 ASERKMNNLLKKELQADAEAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQSGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D        ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMENDDRK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDETDMLLAITTAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKG+  +++  VL   + 
Sbjct: 676 SAEAAKGEDSLALLYVLPPQST 697



 Score = 44.9 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  ++ +L  S+ G+G   +  D    NR+GK +    + +   +   V +   ++ D 
Sbjct: 587 MENDDRKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIE--DETDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITTAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
 gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
          Length = 747

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/747 (34%), Positives = 389/747 (52%), Gaps = 70/747 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR
Sbjct: 9   ETISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLRNTAKYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE RL
Sbjct: 69  TVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH LL++LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+IP HNL
Sbjct: 129 HKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            E+   CV +ID PD  +  LM  +RGPDFPTGA +I  +  I+  Y  GRG++ +R   
Sbjct: 189 KELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYEGGRGTLRLRSKY 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E T      IV+TE+P+QV+ + +LE+IA+ ++ K++  +ADLRDESD +    ++  
Sbjct: 249 IQEGTD-----IVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDESDHENPTRLVIE 303

Query: 315 KRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
            R      D ++N L+  T L+    VN+  +    KP+   L  IL  ++ FR E V R
Sbjct: 304 PRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDGKPQVKPLNHILSEWLEFRTETVRR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R           
Sbjct: 364 RLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKP---KEELMAR----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+VQ  AILE++L +L  L    IR E + L  E  +   IL
Sbjct: 410 ---------------FGLSDVQAEAILEIKLRQLAKLEEIKIRGEQDELSKERDQLEKIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S++R+  +IK+E+L+  +     RRT +V         + + +  E + V +S  G++ 
Sbjct: 455 GSKARMRTLIKKEILADAETYGDDRRTLLVSRAEASAFSETEILPSEAVTVVLSERGWI- 513

Query: 550 RVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                      R GKG      G+  +  D         ++ + +   S G  Y  +   
Sbjct: 514 -----------RSGKGHELEPEGLNYKSGDSFAFAARGKSNQATVLLDSTGRSYSLQTHT 562

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ +   L+   G  +  ++    D+        +  +  G     KLSD 
Sbjct: 563 LP--SARGQGEPITTRLNPPPGAAMKGLLLGNPDDQ------YLLTSDAGYGFIGKLSDM 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK  + L    E++  +   Q   + +   +  G+ + FP+  +   A      
Sbjct: 615 VSKNKAGKALLSLPKGAEVMPPQPVKQLSTDYLAAISNEGRLLVFPVRDLPELAKGKGNK 674

Query: 724 VRGI---SLAKGDQVISMAIVLHADAD 747
           +  I     A  ++++  A+VL AD  
Sbjct: 675 IINIPSSRAAAREELMVGAVVLGADDT 701


>gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
 gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 782

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 260/745 (34%), Positives = 405/745 (54%), Gaps = 35/745 (4%)

Query: 1   MTEHIISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +   D  +      V   +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDLVDDQDTPDSPASGEVLEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMSRLRLTSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG   EP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFVAEAMLEGLSENAVDFRDNYDGRLTEPAVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+GE++D C+ +I  PD   D L+  + GPDFPTG +I+  +  I
Sbjct: 181 AAGIAVGMATNIPPHNIGELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    +E     + QIV+TEIPYQV K+ ++EKIAEL++ K+I  +A
Sbjct: 241 AKAYNTGRGSFRLRCTHEVEDLGRGQWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      V+    +    +V++N ++R + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESAEDIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R +V+ RR+++ ++K   R  VL G  IA  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+ +W+    +   +    + Y   + G   L+EVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMRENWSLDHPRAYTE----ADYVSPAIGAGELTEVQAEAILNMRLRSLRRLEEIELVRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMED 529
            ++L  E    +++L+S       I ++L   K +        PRRTR  E   + ++  
Sbjct: 474 RDALREERAGLVELLASEDLQWSRIAEQLKDTKKQFGKTYEGGPRRTRFAEAGEVEEVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G++        RA          +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWI--------RAMTGHIDLGRELKFKDGDGPRFIFHAETTDRL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G  Y      LP G  +  G+ L  ++ L     I  I+    +        ++
Sbjct: 586 LVFASNGRFYTISASNLPGG--RGMGEPLRLMVDLPNEVEIVDILIHNPE------GRLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       D +   RSGK  + +   D    +      + + + ++ G+ + F 
Sbjct: 638 VASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDR-AKICIRVTGDHVAVVSENGKFLVFA 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQ 734
           +  +        V ++  ++A+G Q
Sbjct: 697 VEEMPELTRGKGVRLQKYNMARGKQ 721


>gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88]
 gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a]
 gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
 gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88]
 gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a]
 gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82]
 gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034]
 gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146]
 gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3]
 gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3]
 gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327]
 gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1]
 gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
          Length = 752

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 752

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
 gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
          Length = 752

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+I+ P+  LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L  IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLREILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357]
          Length = 749

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 123 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 183 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 243 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 298 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 357

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 403

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 404 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 448

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 449 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 507

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 508 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 558

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 559 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 612

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 613 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 672

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 673 SAEAARGEDGLAQLYVLPPQST 694



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 584 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 638

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 639 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 675


>gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
 gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
          Length = 751

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 388/752 (51%), Gaps = 66/752 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG  TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           +IP HN  EV    VA++D P ++LD +M  + GPDFPT A I+  R  I+  Y  GRGS
Sbjct: 183 DIPPHNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  +      V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ + 
Sbjct: 243 VRMRAVWEKEDGN-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESNHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++  L+  T L+  + VN+  +    +P    L+ IL  ++A+
Sbjct: 298 PTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIAY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKAV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +S+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FNISDTQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL S  RL  +IK+E+ +   +    RR+ +   E    M + + +  E + V +
Sbjct: 449 DDLQAILGSERRLNTLIKKEIQADAKDYGDDRRSPLHEREEAKAMSEHEILPSEPITVVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      + +  +  D         ++ + +F  + G  Y   
Sbjct: 509 SDMGWV--------RSAKGHDIEPTNLNYKAGDGFKGAARGKSNQAAVFLDTTGRSYSVD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   L+L  G  I  ++  P+++        + A+  G       
Sbjct: 561 PLELP--SARSQGEPLTGKLTLPPGATIEHVLMAPDEQK------YLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +D +  N++GK  + L    ++L+       QE+ +L  TK G+ + FP++ +   +   
Sbjct: 613 NDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLAITKAGRMLIFPVADLPQLS--K 670

Query: 721 SVGVRGISLAK-----GDQVISMAIVLHADAD 747
             G + I++A      GD +++  ++L   A 
Sbjct: 671 GKGNKIINIAGTQAATGDDLLTWLMILPVGAS 702



 Score = 38.8 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQ  L  S+ G+G   +  D    N++GK + +      N              D 
Sbjct: 591 MAPDEQKYLMASDAGYGFICTFNDLVTKNKAGKALISL---PENAKVLAPIELHNEQEDL 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           ++ ++  G ++  PV ++   S+  KG  I + A
Sbjct: 648 LLAITKAGRMLIFPVADLPQLSKG-KGNKIINIA 680


>gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I+ R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536]
 gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
 gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536]
 gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042]
 gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972]
 gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1]
 gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86]
 gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   L+ L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV
           subunit A and topoisomerase IV [Escherichia coli
           BL21(DE3)]
 gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
 gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
          Length = 743

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/792 (32%), Positives = 395/792 (49%), Gaps = 60/792 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +     + + D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    K+ 
Sbjct: 4   QGNFEQLPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAKFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQD+S R  L++GQGN+GS D     AA RYT
Sbjct: 64  KSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPDDPKSFAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL +LG+ TVD+  N+D + +EPV+L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 124 ESRLTAYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV + C+ ++D+P+  LD L   I+GPD+PT A +I     I+  Y +G GSI +
Sbjct: 184 PHNLREVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSIKM 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E  +     IV+T +P+QV+ A +LE+IA  +  K++  I DLRDESD +    
Sbjct: 244 RAKYEQEDGN-----IVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENPTR 298

Query: 311 --VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
             VI   +   AD +++ L+  T L+  + VNM  +    +P+   L  IL  ++AFR E
Sbjct: 299 LLVIPRSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDGRPKVKGLRDILVEWLAFRTE 358

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V +R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+     LM+R       
Sbjct: 359 TVRKRLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHPKPV---LMER------- 408

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++QT AILEL+L  L  L    IR E + L +E    
Sbjct: 409 -------------------FGITDIQTEAILELKLRHLAKLEEMKIRGEQDELELERAAL 449

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
              L S   L  +I++EL    ++    RR+ IV  +    +E    I  E + V +S  
Sbjct: 450 EKTLGSPRLLNRLIRKELERDAEKYGDDRRSPIVARDAAQALETTALITNEPLTVILSEK 509

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      + +  R  D   D     T   V    S G  Y      
Sbjct: 510 GWI--------RAAKGHDIDVASLNYRSGDGFLDAVKCRTTQPVYILDSTGRAYSTATHD 561

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+   G     ++    D+      + V A+  G   R +L + 
Sbjct: 562 LP--SARTQGEPLTGRLNPPPGSLFLHLLAGQPDD------WYVLASHFGYGFRVQLKEL 613

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  N++GK+ + L    ++L       E + + + T  G+ + FP++ +   A     G 
Sbjct: 614 LSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTLQGRLLIFPVAELPALA--KGKGN 671

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I +   D       V+ A A  +     +     Q  L   D E  ++ +    +   
Sbjct: 672 KLIQIPTADLTAGKDYVIAAVALPENGQLKIIAGKRQLTLKGADVEHYSAGRAKRGLALP 731

Query: 785 ISEERCQELKLK 796
              +R   L+ +
Sbjct: 732 RGFQRVDGLECE 743


>gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 42.6 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
 gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIKDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 44.5 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +    + +   +   V +   + +D 
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIK--DASDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNKLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 44.9 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 85/265 (32%), Gaps = 36/265 (13%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNK----------LSDFIQINRSGKIAMKLDSRDEILS 686
            E E   + L  + A++    +  K            D     +  + A  +   D + S
Sbjct: 438 SELEKERDQLQGILASERKMNKLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPS 497

Query: 687 -VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              T        + +  G  +  P    +      +  V+G        V+    V    
Sbjct: 498 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA-VKG---KSNQPVV---FVDSTG 550

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             Y      +     Q   ++G          D  +           ++  +Q +L  S+
Sbjct: 551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML-----------MESDDQKLLMASD 599

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIR 864
            G+G   +  D    NR+GK +         E   ++    + D +D ++ ++  G ++ 
Sbjct: 600 AGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASDMLLAITQAGRMLM 654

Query: 865 VPVNEIRIASRATKGVVIFSTAKDE 889
            PV+++   S+  KG  I +    E
Sbjct: 655 FPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
 gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L+EI++GPDFPT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     VV+
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVVV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            ++E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGITETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLNYKAGDSYKSDVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++         +   ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLM------EADERKLLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIDDESDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 729 LA---KGDQVISMAIVLHADAD 747
            A   KG+  ++   VL   + 
Sbjct: 676 SAEALKGEDGLAHLYVLPPQST 697



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 5/99 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  E+ +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEADERKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVID----DESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++ ++  G ++  PV+++   S+  KG  I +    E +
Sbjct: 643 LLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAL 680


>gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 760

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 134 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 194 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 254 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 309 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 369 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 415 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 460 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 519 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 570 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 623

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 624 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 683

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 684 SAEAAKGDDGLAHLYVLPPQST 705



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 595 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 651 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 686


>gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T  G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITLAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 753

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 248/758 (32%), Positives = 376/758 (49%), Gaps = 65/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +          + + D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTD--IETPSLFANSGEQLPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLSATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSP 118

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL +LG+ TVD+ PN+DG+  EP VL AR PNVL+NGG
Sbjct: 119 DDPKSFAAMRYTESRLSRYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNGG 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP HNL EV   CV ++++P   L  L E +  PDFPT A I+     ++
Sbjct: 179 SGIAVGMATDIPPHNLREVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAELR 238

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GSI  R     E        IVVT +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 239 KVYETGQGSIRARARYEREGDD-----IVVTALPHQVSGAKLLEQIASQIRAKKLPMVED 293

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++   R      + ++  L+  T L+  + VNM  +    +P+   L 
Sbjct: 294 LRDESDHEHPTRLVITPRSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDGRPQVRDLA 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G+L  ++ FR E V RR ++ L K + R HVL GL IA  N+DEV+ IIR    P   + 
Sbjct: 354 GLLGEWLEFRIETVRRRLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQP---KP 410

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS++Q  AILEL+L  L  L    IR 
Sbjct: 411 ELMSR--------------------------FGLSDIQAEAILELKLRHLAKLEEMKIRG 444

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +    L S  RL   +++E+     +    RR+ +V+      +++   +
Sbjct: 445 EQDELATERDQLEKTLGSERRLRTQVRREIEKDAADYGDERRSPLVQRAAAQALDESALV 504

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         RA +       G+  +  D         ++  V F  
Sbjct: 505 PTEPLTVVLSEKGWA--------RAAKGHDVDARGLNYKAGDAFQAAVTGRSNQPVAFID 556

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   ++  +G R   +    E++        +  T 
Sbjct: 557 STGRTYTIAAHTLP--SARGQGEPLSGRVNPPEGARFVGMATGAEEDRW------LLGTD 608

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     KL D +   ++GK  + + +   +L         E+ I + T  G  + FP +
Sbjct: 609 HGYGFVAKLGDLLGRQKAGKNVLTVPAGAAVLQPAPVRNPHEDHIAVVTTRGYLLLFPAT 668

Query: 712 AIRVFAGRNSV---GVRGISLAKG-DQVISMAIVLHAD 745
            +   A        G+   +L  G ++V+ +A++   D
Sbjct: 669 ELPELARGKGNKLIGIPSAALKDGSERVLDVAVLGPQD 706


>gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
 gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
          Length = 752

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ IR V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRIRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
 gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
          Length = 752

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +    ++ +
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
            R    D+  ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMAQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
 gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
          Length = 752

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|291546805|emb|CBL19913.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus sp. SR1/5]
          Length = 748

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 249/731 (34%), Positives = 394/731 (53%), Gaps = 29/731 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++  I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   NTKQDNIIRTDYAEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQ++     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K      L+DL K+ VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQEVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEVVD   A + N DI    LM  ++GPDFPTG +++ +  +   Y +G G +
Sbjct: 182 SIPPHNLGEVVDAVKAYMKNNDISTRGLMRYLKGPDFPTGGIVVNKDDLVKIYESGTGKL 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            IRG   IEK  G R+Q+V+TEIPY +   N    L  IA LV  K+  DI D+ ++S +
Sbjct: 242 RIRGRVEIEKLKGGRQQLVITEIPYTMIGANIGKFLNDIATLVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELKR A  + + N LY+ T L+  F VNM+A+   +PE   L  I+   V F 
Sbjct: 302 EGIRIVLELKRDADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLGLKQIIAHHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  R+   LL K +++  +  GL  A   +D ++ I+R S + +  ++ L        
Sbjct: 362 FEVNSRKYTTLLAKEQEKREIQEGLIKACDVIDLIIEILRGSKSRDQVKKCLTDGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K           +  +  T+  +E Q  AIL++RL +L GL  D +  E       I 
Sbjct: 422 KFKT--------KTSEKAAKTLKFTEKQAAAILDMRLYKLIGLEIDALMKEHEETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +  +I  EL  +K E  + R+T I      + +E  +   ++   +   
Sbjct: 474 AYEDILNNYDSMAAVIMGELDQIKKEYGSKRKTSIENAEEAVYEEKKMEETEVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY++ +  + Y   +      S            +F       +  F+  G ++  K   
Sbjct: 534 GYMRLIDKNAYERNKDAAHAES----------RYVFTCMNTDKICIFTDTGKLHTVKAED 583

Query: 606 LPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G    N+ + +   E+I  + P  +  +S     V+F T++G  +  K  +
Sbjct: 584 IPLVRFRDKGVPADNLGNYDSTSEQILYVAPLSQVAAS----TVLFVTENGMCKLVKGDE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F + ++   ++ KL   D ++ V    + + ++  ++ G  +R   + I V   +N++GV
Sbjct: 640 F-RASKRTIVSTKLAEDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEISV-TKKNAMGV 697

Query: 725 RGISLAKGDQV 735
           RG+ L   D++
Sbjct: 698 RGMKLTGEDRI 708



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 83/257 (32%), Gaps = 62/257 (24%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++            + G +R         I+++     K  +  E   V TC   +
Sbjct: 514 AVYEEKKMEETEVCFLMDRFGYMRL--------IDKNAYERNKDAAHAESRYVFTCMNTD 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  G+        I +   R+  GV   +L   D                E+I Y
Sbjct: 566 KICIFTDTGKLHTVKAEDIPLVRFRD-KGVPADNLGNYD-------------STSEQILY 611

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +S                                  ++    +L V+E G  K    
Sbjct: 612 VAPLS----------------------------------QVAASTVLFVTENGMCKLVKG 637

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            +FR S R          +K+ E   LV V   ++ DQ++  S+KG  +R+   EI +  
Sbjct: 638 DEFRASKR------TIVSTKLAEDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEISVTK 691

Query: 875 RATKGVVIFSTAKDERV 891
           +   GV       ++R+
Sbjct: 692 KNAMGVRGMKLTGEDRI 708


>gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933]
 gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           W3110]
 gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A]
 gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS]
 gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739]
 gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1]
 gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989]
 gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39]
 gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026]
 gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9]
 gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B]
 gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736]
 gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EDL933]
 gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr.
           W3110]
 gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS]
 gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A]
 gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739]
 gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989]
 gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1]
 gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39]
 gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026]
 gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1]
 gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407]
 gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W]
 gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1]
 gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431]
 gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905]
 gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B]
 gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           G5101]
 gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str.
           493-89]
 gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H
           2687]
 gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010]
 gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68]
 gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180]
 gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11]
 gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509]
 gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125]
 gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74]
 gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9]
          Length = 752

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G]
          Length = 752

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++ SV+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQSVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 44.1 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 84/265 (31%), Gaps = 36/265 (13%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNK----------LSDFIQINRSGKIAMKLDSRDEILS 686
            E E   + L  + A++       K            D     +  + A  +   D + S
Sbjct: 438 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPS 497

Query: 687 -VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              T        + +  G  +  P    +      +  V+G        V+    V    
Sbjct: 498 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA-VKG---KSNQSVV---FVDSTG 550

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             Y      +     Q   ++G          D  +           ++  +Q +L  S+
Sbjct: 551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML-----------MESDDQKLLMASD 599

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIR 864
            G+G   +  D    NR+GK +         E   ++    + D +D ++ ++  G ++ 
Sbjct: 600 AGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASDMLLAITQAGRMLM 654

Query: 865 VPVNEIRIASRATKGVVIFSTAKDE 889
            PV+++   S+  KG  I +    E
Sbjct: 655 FPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 793

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 266/729 (36%), Positives = 405/729 (55%), Gaps = 53/729 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE +GK+HPHG+A++YDAL RMAQD+++R  LIEGQGNFGS+DGDPPAA RYTE 
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           N  EV +    + + PD  ++ L   I+GPDFPTG VI   +  + + Y + RGSI I+G
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G+R++IV+ EIPYQVNK  +++KIAELVR  +   I+DLRDESDR G R+VI
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+ +L +LY+ T L+  F VN+  L   +P    L  +L+ F+  R E++ RR
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R H++ GL  A+ N D+V+ I+R S +   AR+ L  +            
Sbjct: 362 TLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARQLLTSQ------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL++RL+R T L    +++E   L  +I+    ILS
Sbjct: 410 --------------FNLSETQANAILDMRLSRFTSLETQKLKDESIELKQKIERYKQILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S +  + +  +E   +  +    R+T I        +++   +E  +  + + G +    
Sbjct: 456 SDNEKIKVFIEETDELVRKYGDQRKTTIA------TEKELTFKEHFMFAILNTGRIVNYK 509

Query: 553 LSVYRAQRRGGK---GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +    ++    +       + + + + +  +  V     + FF+  G  Y   V  LP  
Sbjct: 510 VEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLP-- 567

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +G+  +NI    +GE     +     +       V   TK G ++R    D    +
Sbjct: 568 ----KGEDKLNI----EGE-----IVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYKS 614

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G   M L+  DE++        + I + TK    + F  + +R+  G  + GV  I L
Sbjct: 615 Q-GHTVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRI-TGDKAKGVEAIDL 672

Query: 730 AKGDQVISM 738
            + D+V   
Sbjct: 673 DENDEVAGA 681



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 27/274 (9%)

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQI-----NRSGKIAMKLDSRDEILSVETCTQ 692
           E E ++   ++      G +   K+ D              +++ L   ++I+S++    
Sbjct: 486 EKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIINSLSISLTEGEKIVSIQEVEG 545

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADYD 749
              I   TK G+     +                I L KG+    +    +      + +
Sbjct: 546 SKPIAFFTKDGKAYWSLV----------------IDLPKGEDKLNIEGEIVGTAYQGEGE 589

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           E   ++       + +S +     S  +         E           +I   ++    
Sbjct: 590 ENRVFLITKKGIIKRMSDEDIFYKSQGHTVMPLNEGDELVVAVADRHPSYIGIYTKNADL 649

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
                 + RI+    KG+ A D+ + +E   +   F +N ++ +++ +  G +  V   E
Sbjct: 650 LLFERNEVRITGDKAKGVEAIDLDENDE---VAGAFFLNGHEYLLISTSFGYMKLVEKTE 706

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             I  RA KG++     KD+ VVS+  + +S+ V
Sbjct: 707 FPIKKRAQKGLLAVKLNKDDYVVSILPVNKSDEV 740



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           ++   ++     +   + ++  +  GY+K V  + +  ++R  KG   V +  +D+V  +
Sbjct: 672 LDENDEVAGAFFLNGHEYLLISTSFGYMKLVEKTEFPIKKRAQKGLLAVKLNKDDYVVSI 731

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             V+    VL  +  G + K K+ +  +P+    + GK   N+       RI  ++  P 
Sbjct: 732 LPVNKSDEVLINTKHGKLLKLKIDKETIPVEKRTSLGK---NLFKFEAD-RIVNVLKLPL 787

Query: 639 DESSWN 644
            E S  
Sbjct: 788 FEESKE 793



 Score = 42.6 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 109/302 (36%), Gaps = 19/302 (6%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             +  +    RI+ +    ET++ +++QR  N+  I         S   +     +    
Sbjct: 494 HFMFAILNTGRIVNYKVEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFT 553

Query: 452 VQTRAILELRLARLTGLGRDDIRNEL--NSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
              +A   L +    G  + +I  E+   +   E +E    L ++  ++  +  E +  K
Sbjct: 554 KDGKAYWSLVIDLPKGEDKLNIEGEIVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYK 613

Query: 510 DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
            +  T      +    ++           +   +    +     +  R      KG   +
Sbjct: 614 SQGHTVMP---LNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRITGDKAKGVEAI 670

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            + + D V   F ++ H  +L  +S G++   +    PI     +G   +  + LN+ + 
Sbjct: 671 DLDENDEVAGAFFLNGHEYLLISTSFGYMKLVEKTEFPIKKRAQKG---LLAVKLNKDDY 727

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS----DFIQINRSGKIAMKLDSRDEIL 685
           + +I+P  + +       V+  TKHG + + K+        +    GK   K    D I+
Sbjct: 728 VVSILPVNKSDE------VLINTKHGKLLKLKIDKETIPVEKRTSLGKNLFKF-EADRIV 780

Query: 686 SV 687
           +V
Sbjct: 781 NV 782


>gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 752

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469]
 gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469]
 gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253]
 gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227]
          Length = 752

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   L+ L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKAGDSYKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ +   L+L  G  I  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPVTGKLTLPPGATIDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RTGKAMITLPENARVMPPLVIRSETDMLLAITHAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   V+   + 
Sbjct: 676 SAEAARGEDGLAHLYVMPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     ++ D 
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRTGKAMITLPENARVMPPLVIR----SETDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITHAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703]
 gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703]
          Length = 757

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 249/743 (33%), Positives = 390/743 (52%), Gaps = 62/743 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
             G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ EV    VA+IDNPD  LDAL++ ++ PDFPT A +I  R  ++  Y TGRGS+ +
Sbjct: 186 PHNVREVAAAAVALIDNPDATLDALLQHVQAPDFPTEAEIITSRDELRKMYETGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDESD +    
Sbjct: 246 RAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENPTR 300

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R      D+++N L+  T L+  + +NM  +    +P    L  IL  ++AFR +
Sbjct: 301 LVLVPRSNRIDLDMVMNHLFATTDLEKSYRINMNMIGLDGRPGVKGLQEILTEWLAFRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R HVL GL +A  N+DEV+ IIR    P+     LM R       
Sbjct: 361 TVRRRLSFRLDKVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPKPV---LMAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 411 -------------------FGLSDTQAEAILELKLRHLAKLEEVKIRGEQDELAKERDQI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
            DIL+S  ++  ++K+E+ +        RR+ + E      M + D    E + + +S +
Sbjct: 452 QDILASERKMSSLLKKEIQADAKAYGDDRRSPLQERAEAKAMSEHDLSPSEPVTIVLSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R+ +      SG+  +  D         ++  V+F  S G  Y      
Sbjct: 512 GWV--------RSAKGHDIDPSGLNYKAGDNYRAAARGKSNQPVVFIDSTGRSYALDPLT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+L  G  +  ++   +++       ++ A+  G       SD 
Sbjct: 564 LP--SARGQGEPLTGKLTLPPGATVEQVLMTADEQR------LLLASDAGYGFICTFSDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  NR GK  + L    ++L   E    ++ +L  T  G+ + FP++ +   +      +
Sbjct: 616 VARNRVGKAVLALPDNAKVLPPLEVSHDDDLLLTITAAGRMLLFPVADLPQLSKGKGNKI 675

Query: 725 RGISLAK----GDQVISMAIVLH 743
             I  A+     D+++ + ++  
Sbjct: 676 VAIPAAQAASGEDRILWLQVISP 698



 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 16/113 (14%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQ +L  S+ G+G   +  D    NR GK + A       +   ++    V+ +D 
Sbjct: 591 MTADEQRLLLASDAGYGFICTFSDLVARNRVGKAVLALP-----DNAKVLPPLEVSHDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L ++  G ++  PV ++   S+           K  ++V++   + +   D
Sbjct: 646 LLLTITAAGRMLLFPVADLPQLSK----------GKGNKIVAIPAAQAASGED 688


>gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
 gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 259/741 (34%), Positives = 387/741 (52%), Gaps = 35/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D    + +T  ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTDT--PDDPLNPQELTE-TLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 58  RELRLASGGGFRKSAKIAGDVMGNFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL  L ++ VD+R NYDG+ +EPVVL A +PN+L NG  
Sbjct: 118 DGDSPAASRYTEARMTAAAEALLAGLDENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HNL EV+  C+ +I  P  D D+L+  I GPDFPTG VI+     I+ 
Sbjct: 178 GIAVGMATNIPPHNLDEVISACLHLIRAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQ 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    IE     + QI+VTEIPYQV K+ ++E++AEL+  K++  +AD+
Sbjct: 238 AYRTGRGAFRLRAKWEIEDLGRGQWQIIVTEIPYQVQKSKLIERLAELIALKKVPALADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L++ + L+  F++NM V ++G  P+  +L  +L
Sbjct: 298 RDESADDVRIVIEPRVRTIEPEMLMGMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEVL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RRT + L K   R  VL G   A  NLD V+ IIR+  +P+ A   L 
Sbjct: 358 RAFLDHRREVLQRRTTHRLEKIDHRLEVLAGFITAYLNLDRVIDIIRYDEDPKAA---LQ 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W    I    D     S          L+EVQ  AIL +RL  L  L   ++ NE +
Sbjct: 415 AEDWGL-KIPRAADESRYVSPLGRPVAAGGLTEVQADAILNMRLRSLRRLEEIELVNERD 473

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L  E      ++         I  EL  V+ +         RRT   E   + D+  E 
Sbjct: 474 ALQAERAGLHALMGDEKLQWSRISDELKDVRKQFGKTSKGGARRTAFGEGKEVADVPLEA 533

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+++ +   +   Q         +  +D D     F   T   +L 
Sbjct: 534 MIEREPVTVICSDMGWIRAMKGHIALDQE--------MKFKDGDKARFAFHAETTDRLLA 585

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+S G  Y      LP G  +  G+ L  ++ L    +I  ++     +       ++ A
Sbjct: 586 FASNGRFYTVLAANLPGG--RGTGEPLRLMVDLPNDAQIVDLLIHRPGQK------LILA 637

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       D I   R+GK  + L      L V+     + +       + + F + 
Sbjct: 638 SSAGDGFIVAEDDVIAQTRAGKQVLNLSEGASALIVKPVQG-DHVACVGDNRKMLVFALD 696

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GV+      G
Sbjct: 697 ELPEMA--RGKGVKLQKFKDG 715


>gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
 gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
          Length = 752

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P+  LD +++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAMTLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFVTTDLEKSYRINLNMIGLNGRPSVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E N L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S  G+V 
Sbjct: 452 ASERKMSNLLKKELQADSDAFGDDRRSPLHEREEAKAMNEHDMLPSEPVTIVLSQSGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFIDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ +   L+L  G  +  ++   E++       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPITGKLTLPPGATVDHMLMEGEEQK------LLMASDAGYGFICTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       + + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALISLPDNAHVMPPLVIENDNDMLLAITAAGRMLMFPVSDLPQLSKGKGNKIISIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKG+  ++   +L   + 
Sbjct: 676 SAEAAKGEDGLAHLFILPPQST 697



 Score = 44.1 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++ +EQ +L  S+ G+G   +  D    NR+GK +    +S  +    +  +   NDND 
Sbjct: 587 MEGEEQKLLMASDAGYGFICTFNDLVARNRAGKAL----ISLPDNAHVMPPLVIENDNDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIISIPSAE 678


>gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
 gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
          Length = 754

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 250/796 (31%), Positives = 408/796 (51%), Gaps = 72/796 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TG+GS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V H+E        I+VT +P+QV+ A +LE+IA L++ K  ++  +ADLRDESD +   
Sbjct: 250 AVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
             V+I        +V++  L+  T L+S + VN+  +    KP+   L  +L  ++AFR 
Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRNLLVEWLAFRV 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR ++ L+K   R H+L GL IA  NLDEV+ IIR + +P   + EL+ R      
Sbjct: 365 QTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHP---KAELIAR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q   IL+ RL +L  L    +R+E ++L  E  +
Sbjct: 416 --------------------FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQAK 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  +++ EL+   +     RR+ IV+      + + + +  E + V +S 
Sbjct: 456 LQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTETELLPNEKITVVLSE 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        R+ +      +G+  +  D         ++   +F  S G  Y     
Sbjct: 516 KGWV--------RSAKGHDIDATGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSVPAH 567

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   L+   G     ++  P+D+S       V A+  G     K  D
Sbjct: 568 TLP--SARGQGEPLTGRLTPPPGANFECVL-LPDDDS-----LYVIASDAGYGFVVKGED 619

Query: 665 FIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---R 719
               N++GK  + L +  +++        + N +   T  G+ + F IS +         
Sbjct: 620 LQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTTEGRLLVFKISDLPQLGKGKGN 679

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             +G+ G  +A  ++ ++   V+   A           + A +R +S   +++   K + 
Sbjct: 680 KIIGIPGERVASREEYVTDIAVIPEGATL--------VLQAGKRTLSLRPDDLEHYKGER 731

Query: 780 SVEGNISEERCQELKL 795
              GN      Q +  
Sbjct: 732 GRRGNKLPRGFQRVDA 747



 Score = 41.1 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +   C  L   +   +  S+ G+G      D +  N++GK + +           ++   
Sbjct: 589 ANFECVLLPDDDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NNAKVILPR 643

Query: 846 PVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERI 897
           PV+D +   +  V+ +G L+   ++++    +  KG  I         +++E V  +  I
Sbjct: 644 PVDDRESNWLASVTTEGRLLVFKISDLPQLGKG-KGNKIIGIPGERVASREEYVTDIAVI 702

Query: 898 RE 899
            E
Sbjct: 703 PE 704


>gi|194476877|ref|YP_002049056.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
 gi|171191884|gb|ACB42846.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
          Length = 818

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 267/752 (35%), Positives = 418/752 (55%), Gaps = 51/752 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I S+++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++ +  N  Y 
Sbjct: 3   EERIQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELDLTPNHAYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+AQ+++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLAQNFANRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL    +  LL ++G  TV+F PN+D S  EP+VL A+ P +L+NG  GIAVGMAT++P
Sbjct: 123 IRLALIASDGLLSEIGSSTVEFTPNFDNSQHEPIVLPAQLPFLLLNGCSGIAVGMATSVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+V+  +A+I  P++    L+++I GPDFPTG  +L   GI+  Y  GRGSI +R
Sbjct: 183 PHNLGEIVNALIAIIQKPNLSDKTLLDLIPGPDFPTGGEVLINKGIQETYLEGRGSITMR 242

Query: 252 GVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  +V+TE+PYQ+NKA  +EK+AE V   +I+ I+D+RDESDR 
Sbjct: 243 GVAHIEEVRLSKGRHRRFAVVITELPYQLNKAGWIEKLAEKVNYGKIIGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++    + +L+ L R TS ++ FS  ++AL   +P +  L  +L+ F+++RE
Sbjct: 303 GTRLVVELRKDTEPEKVLSILERRTSFKTNFSSIILALVDGQPVQLNLRQLLEHFLSYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT+Y L +  +R  V+ GL  A+ +L  +V II+       A+  L         
Sbjct: 363 ITIIRRTQYTLKRKENRLEVVEGLLRALFSLTRIVEIIQALTESSNAKLNLRVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q+ AIL + L RLT   ++++  E NSL ++ K+
Sbjct: 417 --------------------FDLSDIQSDAILNMPLRRLTSFEKENLHIEANSLRLDRKK 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV------ 540
             ++L  R  LL  I  EL ++K    TPRRTR+ E   ++ +    V +   +      
Sbjct: 457 LNNLLKKREALLSTIMNELKNLKKRFATPRRTRLREESFNLLNSSANVSQQEQILENLPK 516

Query: 541 ----TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
                +SH G V+ +   +           SG           L  +S H S+L FSS G
Sbjct: 517 TNQLIISHDGQVQIIAPQLINHLHLEATLTSGHHPS---PPQLLLPISQHPSILIFSSSG 573

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHG 655
            V   + W      P+   + L N L    G+++  I+P   + +   +   +   +  G
Sbjct: 574 RVGLLR-WEFAEQQPRNISEFLPNSL---LGDQVIQILPLNLEANLIPSVSSIGLLSSDG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIR 714
           + +R  + +F  ++      ++L     +L V  C +  ++++ + LG+ ++  I + I 
Sbjct: 630 HFKRLPIEEFHDLSGRAVTILRLKEGVSLLRVVECFENEELIIGSSLGRLLKIRIQTNIL 689

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               R + G   + L  G+ VI    +    +
Sbjct: 690 PMMKRTAQGTLLLKLLPGETVIGATCIKEEGS 721



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           I  +S  G  KR    +F  +S R      A  + ++ E  +L+ V    +N+++I+ S 
Sbjct: 622 IGLLSSDGHFKRLPIEEFHDLSGR------AVTILRLKEGVSLLRVVECFENEELIIGSS 675

Query: 859 KGTL--IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            G L  IR+  N + +  R  +G ++      E V+    I+E 
Sbjct: 676 LGRLLKIRIQTNILPMMKRTAQGTLLLKLLPGETVIGATCIKEE 719


>gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003]
 gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003]
          Length = 774

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 245/750 (32%), Positives = 377/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+  N K VK AR+ 
Sbjct: 21  LTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+++R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDG  +EP  L AR P +L+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 SKLLLDEIDQGTVDFMPNYDGVEEEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I    LM+ + GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKIAHAELMQHLPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DL 299
             +  + Q+V+TE+P       +LE+I E    K  +                      +
Sbjct: 261 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLGLLDAV 320

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +     ++   + +  D    +N L  +TSL+S  S+N+V + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 --------------------------LMAAFGLSDRQADDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S S +  ++ +E+ +   +    RRT I +      +   ++ E
Sbjct: 472 LAELRDEKAKLEELLGSESAMKRLLIKEIEADAKQYGDERRTLIQQEKRATYE-ARVIDE 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 531 PVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYAAFQCRTPDTLVAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D++      ++ A+ +G 
Sbjct: 583 RVYSVAVASLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    +  +      + +   +  G+ + F I  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPLLPDASQVACLSSTGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 695 LSG-GGRGVTLMALDDKETLVQALAINGAG 723



 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 6/168 (3%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G +   GD + +       D           +  A   L  G  + +          G+
Sbjct: 553 AGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVASLPGGRGDGVPVTSLIELESGS 612

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L  S  GFG      D     ++GK     D         L  +
Sbjct: 613 HLMHYYAA--SADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGA----VPLAPM 666

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             + D  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 PLLPDASQVACLSSTGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 714


>gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
 gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
          Length = 757

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 247/749 (32%), Positives = 387/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N 
Sbjct: 3   EMTHDGTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNNA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    VA+++ P+  L+ L+E ++GPDFPT A +I  R  I+  Y +G+GS
Sbjct: 183 DIPPHNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V H E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWHKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               VV+        D ++N L+  T L+  + +NM  +   ++P+   L+ IL  ++A+
Sbjct: 298 PTRLVVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDHRPQVKGLLEILTEWLAY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L+K   R H+L GL  A  N+DEV+ IIR    P+     LMQR    
Sbjct: 358 RRDTVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FELSDTQAEAILELKLRHLAKLEETKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +I++E+ +  +     RR+ I   E    M + D I  E + + +
Sbjct: 449 DQLQALLASERKLSTLIRKEIQADAEAFGDERRSPITEREEARAMSEHDFIPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SESGWV--------RSAKGHDIDASGLSYKAGDSFRAAAKGKSNQPVVFMDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PTTLP--SARGQGEPLTGKLTPPPGATIEHVLMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    +          ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSITAAGRMLLFPVADLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++  +VL     
Sbjct: 673 NKIVSIPAAQAASGEDKLAWLLVLPPQTS 701



 Score = 41.1 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +        +       +D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKAFPPMELH----GSDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV ++   S+           K  ++VS+   + +   D
Sbjct: 647 LLSITAAGRMLLFPVADLPQLSK----------GKGNKIVSIPAAQAASGED 688


>gi|294790962|ref|ZP_06756120.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458859|gb|EFG27212.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 891

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 270/896 (30%), Positives = 424/896 (47%), Gaps = 115/896 (12%)

Query: 3   EHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +H  S D    ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   QHAASYDPRTIKQNIVDTPLGEEMSTSFLAYAYSVIYARALPDTRDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  +K Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMGLSPDKSYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  + + +G++TVDF PNYD   QEP VL +  PN+LVNG  G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNESIGEETVDFTPNYDNKLQEPTVLPSAIPNLLVNGASG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +P+   + LM  + GPD P G +I+GR GIK AY
Sbjct: 185 IAVGMATNMVTHNLGEVVSAAKYLMAHPNASTEDLMTYLPGPDLPGGGIIMGREGIKEAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            +GRGS + R  +HIE  +  ++ IVVTE+P+ V    +LE+I+E ++ K++  I+   D
Sbjct: 245 TSGRGSFLTRAATHIENVTARKKAIVVTELPFMVGPEKVLERISEGIKNKKLEGISGAID 304

Query: 302 ESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR    R+VIE+K G     +L QL++YT L+  F++N VAL   +P    +  +L  
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPRAVLGQLFKYTPLEDSFTINNVALVNGRPHTMGIKELLSV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S + ++A+  LM  
Sbjct: 365 WIEHRRTVVTRRSEYRKRKAEERLHLVDGLLLALIDIDEVIDVIRTSDDADSAKTRLMA- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L ++Q + IL+LRL RLT + R ++ +E + L
Sbjct: 424 -------------------------VFDLDQIQAQYILDLRLRRLTKMSRIELESERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE------------------ 522
              I +   ILSS       + + +     E DTPRRT +++                  
Sbjct: 459 QRLIAQLDQILSSTQVRDMEVIKSMDRAVQEWDTPRRTVLLDQDESGSYVAVPTARSGSG 518

Query: 523 -----------------------------GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
                                                  +  +   + ++  G + R   
Sbjct: 519 KSESVQAADLAGSSSKNAASSLSVQTSALASAQAAGSLELEDKPCSIILTADGLIAR--- 575

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP------ 607
           S   A+               D +  +   +T +S    +S G +       LP      
Sbjct: 576 SSPAAKDLWESRTEARPRGSHDQIVAIIRSTTRSSYGIITSHGRMVLAHSADLPNLVLQE 635

Query: 608 ----IGSPQARG-KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                G+ +A+           +  E + TI+P P    +   L +   T+ G V+R   
Sbjct: 636 NLTMEGAVKAQELLHNTQSTESSDDEEVITILPLPSPNDTKIKL-LAIGTRKGIVKRWNG 694

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                ++    I   L   D ++        + ++  +     + +  SA+R   GRN+ 
Sbjct: 695 DSPTTMDSWSIID--LKDDDRVVFAAPADDTDRLVFISSDSSLLTYEASAVRP-QGRNAA 751

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G+ GI LA   QV++  ++      + +     +   +     SG    + ++  DS   
Sbjct: 752 GMGGIRLAPHCQVLAFNVIPAGKIAWIDSSSDGQEAKSHSLQASG--AVVVTIAGDSHA- 808

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             L  +E G  K T    F    R+ KG+R+    K    
Sbjct: 809 ------------------LEGTENGSAKVTPLEKFPSKGRNTKGVRSQRFHKSENT 846



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 20/284 (7%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR---SGKIAMKLDS 680
           L+Q E  + +        S  +  V  A   G+  +N  S          S + A  L+ 
Sbjct: 499 LDQDESGSYVAVPTARSGSGKSESVQAADLAGSSSKNAASSLSVQTSALASAQAAGSLEL 558

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ--VIS- 737
            D+  S+     +  I  ++   + +    +  R     + + V  I         +I+ 
Sbjct: 559 EDKPCSIILT-ADGLIARSSPAAKDLWESRTEARPRGSHDQI-VAIIRSTTRSSYGIITS 616

Query: 738 ---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              M +   AD         +    A +        + T   +D  V   +      + K
Sbjct: 617 HGRMVLAHSADLPNLVLQENLTMEGAVKAQELLHNTQSTESSDDEEVITILPLPSPNDTK 676

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +K   +   + KG  KR +       +         D+   +    +V   P +D D+++
Sbjct: 677 IK--LLAIGTRKGIVKRWNGDSPTTMD----SWSIIDLKDDDR---VVFAAPADDTDRLV 727

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +S   +L+    + +R   R   G+     A   +V++   I 
Sbjct: 728 FISSDSSLLTYEASAVRPQGRNAAGMGGIRLAPHCQVLAFNVIP 771


>gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 749

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 63  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 123 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 182

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 183 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 243 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 297

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 298 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 357

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 358 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 403

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 404 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 448

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 449 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 507

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 508 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 558

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 559 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 612

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 613 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 672

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 673 SAEAAKGDDGLAHLYVLPPQST 694



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 584 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 639

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 640 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 675


>gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032]
 gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032]
          Length = 756

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 386/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    V++ID+P   LD L++I++GPD+PT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L+K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+E+ +  D     RR+ +   E    M + D +  E + + +
Sbjct: 449 DQLQGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +        +  +  D         T+  V+F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDAKALSYKAGDNWLSSAKGKTNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  +  ++   ED+       ++ A+  G       
Sbjct: 561 PVSLP--SARGQGEPLTGKLTLPPGAVVEHMLMTGEDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L     +L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLVARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     AKGD  ++   +L   + 
Sbjct: 673 NKIISIPSADAAKGDDKLAYLTILPPQST 701



 Score = 45.3 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  ++Q +L  S+ G+G   +  D    NR+GK +             L  +   +D+D 
Sbjct: 591 MTGEDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL----PENAHVLKPLEIEHDDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIV 903
           ++ ++  G ++  PV ++   S+  KG  I S         D+++  +  +     V
Sbjct: 647 LLAITAAGRMLMFPVADLPQLSKG-KGNKIISIPSADAAKGDDKLAYLTILPPQSTV 702


>gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180]
 gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180]
          Length = 748

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/754 (31%), Positives = 368/754 (48%), Gaps = 67/754 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I + E    G+    + D  + +YL Y++ VIL RA+P + DGLKPV RRIL+ M
Sbjct: 1   MPDTAIYTAE----GLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS 
Sbjct: 57  SELGLSATAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +  + T+D++PN+DG+  EP +L AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNGA 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT+IP HNL EV   C+ ++++PD  L+ L+ II  PDFPT A I+     I 
Sbjct: 177 TGIAVGMATDIPAHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E+       IV+T +PYQV+ + +LE+IA     K++  I D
Sbjct: 237 KLYRTGNGSLRQRARYTREQGD-----IVITALPYQVSGSRVLEQIAAQFNAKKLPMIED 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
            RDESD +     V++        + +++ L+  T L+  + VN+  +    +P    L 
Sbjct: 292 FRDESDHEYPTRLVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNGRPRVMDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ +R E V RR ++ L K  +R H+L GL IA  NLDEV+RI+R    P   R 
Sbjct: 352 EILSEWLIYRTETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEP---RP 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            L+E Q   +L  RL +L  L    IR 
Sbjct: 409 VLMER--------------------------FGLTEPQADYVLNTRLRQLARLEEMKIRA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E      +L     L G+++ E+ +  +     RR+ +VE      +++ +  
Sbjct: 443 EQAELAAERDGLQRLLGDERALKGLVRDEIAADAERYGDARRSPLVERAAAAAIDETELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      + +  R  D    L  + ++ + +F  
Sbjct: 503 PSEPLTVVLSEKGWV--------RAAKGHEVDATTLSYRAGDAFLSLARLRSNQTAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y       P  S + +G+ L   L    G R  T++              + A+ 
Sbjct: 555 STGRSYALPAHTFP--SARGQGEPLTGRLDPPPGARFVTVL------GDNAETRYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     +  + I   + GK  + L     +L        + + +   T  G  + FP++
Sbjct: 607 AGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEGSSVAAVTTAGHLLLFPLA 666

Query: 712 AIRVFAGRNSVGVRGISL----AKGDQVISMAIV 741
            +   A      + GI      A+G+++I++A+V
Sbjct: 667 ELPEMARGKGNKIIGIPAGRAGAEGERLIAVAVV 700



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E   L  S+ G+G      +     + GK +              +A     +   +  
Sbjct: 597 AETRYLLASDAGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGI---EGSSVAA 653

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRE 899
           V+  G L+  P+ E+   +R  KG  I         A+ ER+++V  + E
Sbjct: 654 VTTAGHLLLFPLAELPEMARG-KGNKIIGIPAGRAGAEGERLIAVAVVGE 702


>gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 384/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASEHKMNSLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
 gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
          Length = 782

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/743 (34%), Positives = 403/743 (54%), Gaps = 35/743 (4%)

Query: 1   MTEHI--ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +   +S E    G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDIVDDPTSPEMPANGELREPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMSRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ LG+D VDFR NYDG  QEP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+ E++D CV +I  P+   D L++ + GPDFPTG  I+  +  I
Sbjct: 181 ASGIAVGMATNIPPHNISELIDACVHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    IE     + Q+VVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 241 AQAYRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIG 356
           D+RDES      ++    +    +V++  ++R + L+  FS+NM V ++G  P+  ++  
Sbjct: 301 DVRDESAEDIRIILEPKSKNVDPEVLMGLMHRNSDLEVRFSLNMNVLIDGVTPKVCSMKE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   
Sbjct: 361 VLRAFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAA--- 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+ +W+    +   +    + Y   + G   LSEVQ  AIL +RL  L  L   ++  E
Sbjct: 418 LMRENWDREHPRAFTE----AEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELTRE 473

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMED 529
            ++L  E    +++L S       I ++L   K +         RRT+  E   + D+  
Sbjct: 474 RDALREERAGLVELLGSEELQWKKITEQLRETKKQFGKNYEGGARRTQFAEAGEIEDVPL 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G+++ +   +  +          +  +D D    +F   T   +
Sbjct: 534 EAMIDREPITVVCSQMGWIRAMTGHIDLS--------RELKFKDGDGPRFIFHAETTDRL 585

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F S G  Y      LP G  +  G+ +  ++ L     I  +     +        ++
Sbjct: 586 LVFGSNGRFYTLSAANLPGG--RGMGEPVRLMVDLPNEVEIVDLFIHNPE------GRLL 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN       D +   R GK  + +   DE   +      + + + ++ G+ + F 
Sbjct: 638 VASDAGNGFVCAEKDIVAQTRGGKQVLNVKD-DERAKICIPVAGDHVAVVSENGKFLVFA 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           I  +        V ++  ++A+G
Sbjct: 697 IEEMPELTRGKGVRLQKYNMARG 719



 Score = 44.1 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  +L  S+ G G   +  D     R GK +      +  +I   VA       D 
Sbjct: 629 IHNPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQVLNVKDDERAKICIPVA------GDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +VS+ G  +   + E+   +R  KGV +  
Sbjct: 683 VAVVSENGKFLVFAIEEMPELTRG-KGVRLQK 713


>gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5]
 gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++   +F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPGVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
 gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
          Length = 752

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 273/783 (34%), Positives = 393/783 (50%), Gaps = 62/783 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H       E   I    +++ +   YL YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MTVHTAPPGGAEPDRIIDEPLSEALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M +       KCA++ GEVMG YHPHG+ AIYD L RMAQ ++ R  L++GQGNFG++
Sbjct: 61  REMRLNPENAARKCAKVVGEVMGGYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L  AA  LLD + +D VDF+P YDGS  EPVVL A +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEAKLTAAATLLLDGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN GE++D C+ +++NP+   +ALM  ++GPDFPTG VI+  R  +  
Sbjct: 181 GIAVGMATSIPPHNAGELIDACLLLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            YATGRG + +R     E       QIVVTEIPYQV KA ++EK+AEL+  K+   + D+
Sbjct: 241 TYATGRGGVRVRARWTKEDLGKGTYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDV 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGIL 358
           RDES      V+    R   A+V++  L++ + L++ FSVN+  L+    P    L   L
Sbjct: 301 RDESAEDVRLVLEPKSRNVEAEVLMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQAL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           KAF+  R EV+VRR ++ L K   R H+L GL IA  NLDEV+RI+R+   P+       
Sbjct: 361 KAFLDHRREVLVRRARHRLEKIEARLHILDGLMIAYLNLDEVIRIVRYEDKPKE------ 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  LSE+Q  AIL  RL +L  L   +IR E  
Sbjct: 415 -----------------------KLIETFSLSEIQADAILNTRLRQLAKLEEMEIRREHA 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLL---DMEDEDCI 533
            L  E    L +L+S +    ++ + L  VK EL     RR+   E      +   E  I
Sbjct: 452 ELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGKLNDRRSTFGEAPQVDAEAAIEAMI 511

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           VRE + + +S  G++        RA +   +  S +  ++ D +  L    T   +L F+
Sbjct: 512 VREPITIILSERGWI--------RAAKGRIEDPSELKFKEGDKLQFLVPAETTDKLLIFA 563

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +     +LP    +  G+ L  ++ L+    I  + P             + A+K
Sbjct: 564 SDGRFFTLGCDKLPGA--RGHGEPLRLMIDLDDKVGIVDVFPHKPGAKR------LLASK 615

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G        + I   R+GK  +         E  +V      + I +    G+ + FP+
Sbjct: 616 QGYGFILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGKILVFPL 675

Query: 711 SAIRVFAGRNSVGVRGISLAKG---DQVI--SMAIVLHADADYDERICYMKHMSAQRRLI 765
           + +         GV+  S  +G   D ++  +       DA    R        A RR  
Sbjct: 676 AELPEMP--RGKGVKLQSYREGGLRDALVFNAAEGAAWIDAAGRTRAWDGWQEWAGRRAG 733

Query: 766 SGD 768
           +G 
Sbjct: 734 AGK 736



 Score = 42.2 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  S++G+G      +     R+GK +           GA V   PV   DQI +V D G
Sbjct: 611 LLASKQGYGFILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAV-CLPVT-GDQIAVVGDNG 668

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKD 888
            ++  P+ E+    R  KGV + S  + 
Sbjct: 669 KILVFPLAELPEMPRG-KGVKLQSYREG 695


>gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 760

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 134 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 194 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 254 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 309 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 369 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 415 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 460 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 519 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 570 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 623

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 624 RAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 683

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 684 SAEAAKGDDGLAHLYVLPPQST 705



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 595 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIE----DEHDM 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 651 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 686


>gi|319937327|ref|ZP_08011734.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
 gi|319807693|gb|EFW04286.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
          Length = 885

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 255/738 (34%), Positives = 405/738 (54%), Gaps = 40/738 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I + S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +NK Y K
Sbjct: 3   EKIITQSLDDIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYAMYKEGNTYNKPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG+ ++YDA+ R++Q+W +R+ L++ QGN GS+D DP AA RYTE 
Sbjct: 63  SAKTVGNVIGNYHPHGDTSVYDAMVRLSQEWKMRIPLVDMQGNNGSIDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV    N+D +  EP V+ A+YPN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLKDIDKETVQMALNFDDTEYEPTVVPAKYPNLLVNGATGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  +  + +P   LD LME ++GPDFPTGA++ G+ GI+ A+  GRG +V+R  
Sbjct: 183 NLEEVIDATIYRLSHPHCSLDKLMEFMKGPDFPTGAIVEGKQGIRTAFEKGRGKVVVRSK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I        +I+V+EIPY+VNKA ++ K+ E+   K +  I ++RDESDR G  +VI+
Sbjct: 243 TEIIHEKN-MNKIIVSEIPYEVNKAELVRKLDEIRFNKSVDGIIEVRDESDRNGLSIVID 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+       LN  ++ T LQ  ++ NMVA+   +P    +  IL  ++  + EV+ +R+
Sbjct: 302 LKKDVDVQNTLNYFFKNTDLQKNYNYNMVAIKDKRPVCMGIEAILDGYIQHQIEVITKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + LNKA +R H++ GL  AV+ LD+VV  IR S + + A+                   
Sbjct: 362 IFDLNKAEERKHIVDGLIKAVSILDDVVHTIRHSKDKQDAK------------------- 402

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                  I        +E Q+ AI+ L+L RLT      +  E   L   I+   DIL+S
Sbjct: 403 -------INIQTQFGFTEKQSEAIVTLQLYRLTNTDIVSLEKEKEELESLIQTLNDILNS 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
              L  +I  EL ++K +  +PR T I + + +  + +E  I+ ED+ V+++  GY+KR+
Sbjct: 456 DQVLRKVIVDELKNIKKQYPSPRLTEIKDEVQEIIINEEAMILPEDIYVSITQDGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y+A      G+     +D+D + DL   +T   +L F+  G      + +L     
Sbjct: 516 SQRSYKASENTLFGK-----KDDDVLVDLHFANTLDKLLVFTDKGNYMYIPLHKLEEFKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  GK +  ++ ++  E+I   +     +S    LY++ A++ G ++R +L +F     +
Sbjct: 571 KELGKHISYLIKVSPEEKIVGSVLV---KSFDYPLYIILASRFGQMKRVELKEFDVTRFT 627

Query: 672 G-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                + L   D +L V     +  I+LTT+ G    +    I V     + G++GI+L 
Sbjct: 628 KPMKCINLKKDDSLLQVGLSDGQQGIVLTTQAGYATLYSEQEISVLGV-KAGGIKGINL- 685

Query: 731 KGDQVISMAIVLHADADY 748
           K D++I+M I      D 
Sbjct: 686 KNDELIAMNIFNPLRTDS 703



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 100/266 (37%), Gaps = 14/266 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   E+         V  T+ G ++R           S          D ++ +      
Sbjct: 489 IIINEEAMILPEDIYVSITQDGYIKRIS---QRSYKASENTLFGKKDDDVLVDLHFANTL 545

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG--ISLAKGDQVISMAIVLHADADYDER 751
           + +L+ T  G  +  P+  +  F  +         I ++  ++++   +V   D  Y   
Sbjct: 546 DKLLVFTDKGNYMYIPLHKLEEFKWKELGKHISYLIKVSPEEKIVGSVLVKSFD--YPLY 603

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGK 810
           I         +R+   + +     K    +     +   Q  L   +Q I+  ++ G+  
Sbjct: 604 IILASRFGQMKRVELKEFDVTRFTKPMKCINLKKDDSLLQVGLSDGQQGIVLTTQAGYAT 663

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVN 868
             S  +  +      GI+  ++    +   L+A+   N    D  IL+SD+  + R+ ++
Sbjct: 664 LYSEQEISVLGVKAGGIKGINL----KNDELIAMNIFNPLRTDSFILISDQPGIKRLRIS 719

Query: 869 EIRIASRATKGVVIFSTAKDERVVSV 894
           +I   +RATKG +IF + K + + S+
Sbjct: 720 DIPSCNRATKGNLIFKSPKTKHIQSL 745


>gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
 gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
          Length = 752

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DE++ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRCEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  I+   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHILMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL + + 
Sbjct: 676 SAEAARGEDGLAQLYVLPSQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
 gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
          Length = 752

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P   + ELM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEP---KPELMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S  G+V 
Sbjct: 452 ASERKMSNLLKKELQADADAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQSGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENARVMQPVVIEDETDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKG+  ++   VL   + 
Sbjct: 676 SAEAAKGEDGLAQLYVLPPQST 697



 Score = 46.1 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       +  V   ++ D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAR----VMQPVVIEDETDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
 gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
          Length = 773

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 259/747 (34%), Positives = 389/747 (52%), Gaps = 43/747 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    SD +       + +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDITDPSDLDPRNVSEPLRLA--LGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG+  EPVVL A++PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  P+   D L+  + GPDFPTG +I+     I N
Sbjct: 179 GIAVGMATNIPPHNISELVDACIHLIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIAN 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R   ++E       QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+
Sbjct: 239 AYRTGKGGFRLRCRWNVEDLGRGVWQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    +    +V++  LYR + L+  FS+NM V ++G  P+  ++  +L
Sbjct: 299 RDESAEDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+ + L K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRREVLQRRSAHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDADPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNEL 477
              W     +      D+S Y   +  T   L+E+Q  AIL +RL  L  L   ++  E 
Sbjct: 416 AEDWGKKHSRA----TDESDYVPPAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQ 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----------RRTRIVE--GLL 525
           + L  E     D+L S +     I ++L + K +              RRT   E   + 
Sbjct: 472 SELMAERAGLEDLLDSEALQWDSIIEQLRATKKQFGKDWKLDGVNVGLRRTTFAEAGEIE 531

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  E  I RE + V  S +G++        RA          +  +D D    +F   T
Sbjct: 532 DVPLEAMIDREPITVVCSEMGWI--------RAMTGHIDLNRELKFKDGDGPRFVFHAET 583

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +L F S G  Y      LP G  +  G+ L  ++ L    +I  I            
Sbjct: 584 TDRLLVFGSNGRFYTIGAVSLPGG--RGMGEPLRLMVDLPNDVQIVDIFIHK------PG 635

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++ A+  G+       + +   RSGK  + +    + +       E  + +  +  + 
Sbjct: 636 RKLLVASSAGDGFVVPEDEVLAQTRSGKQVLNVRGDAKAMICAPIKGE-AVAVVGENRKV 694

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKG 732
           + F +  +         GVR      G
Sbjct: 695 LVFGLDELPEMG--RGKGVRLQKYKDG 719


>gi|315655460|ref|ZP_07908360.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490400|gb|EFU80025.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 845

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 299/902 (33%), Positives = 423/902 (46%), Gaps = 133/902 (14%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  +K +VK
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
             R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA RYTE 
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY TGRG  + R  
Sbjct: 186 NVGETINAAIYLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYETGRGIFITRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
           + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR    R+V+
Sbjct: 246 ATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R EV  RR
Sbjct: 306 EVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRVEVTRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM              
Sbjct: 366 SEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q   ILELRL RLT   R ++  E + L   I E   IL+
Sbjct: 413 -------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILA 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L  +++ ++      L TPRRT ++E               ++ T++    V  VP
Sbjct: 460 STEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVLGTMT----VSDVP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRD------------EDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           L V  A  R   G  G  +R                +    +  T       +S GFV +
Sbjct: 516 LEVPDAPCRIVLGADGRAIRLANTGPVNRLEGFNSTIAGSILTHTRGCFGVVTSSGFVVR 575

Query: 601 EKVWRLPIGS-----------------------------------PQARGKA-LINILSL 624
             V  LP G                                        G   L      
Sbjct: 576 LDVLSLPPGEKSSLADSAAGASSAAAAGSTETADIELNLSESAPPWSFDGAPQLSAAARF 635

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
             GE +  I+   EDE+      V   T HG V+R +       +R   I   LD  D++
Sbjct: 636 EDGETVVGILTLDEDET------VGMMTAHGIVKRMRPDYPSTQDRFSII--NLDGTDQL 687

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV   
Sbjct: 688 IYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVPDD 746

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                        M+A                                            
Sbjct: 747 LVAATTVATVAAIMNAMPGANQSSI----------------------------------- 771

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
                K T    + +  R  +G+R     K      +  V P    D I  +   G  ++
Sbjct: 772 -----KLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAFVGP----DPIHAIDAHGKPVK 822

Query: 865 VP 866
           +P
Sbjct: 823 LP 824



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++  G  KR         +R         +  ++    L+      D+ QI++
Sbjct: 649 EDETVGMMTAHGIVKRMRPDYPSTQDR-------FSIINLDGTDQLIYAGACPDDAQIVM 701

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 702 ISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDD 746



 Score = 44.5 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/186 (11%), Positives = 56/186 (30%), Gaps = 23/186 (12%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                  G+ V+ +  +   +         +          + D   I +L         
Sbjct: 631 AAARFEDGETVVGILTLDEDETVGMMTAHGIVKRMRPDYPSTQDRFSIINLDG------- 683

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +         +  I+ +S      RT +   R   R+  G+    + +  +   ++A 
Sbjct: 684 TDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQ---VIAG 740

Query: 845 FPVNDN-------------DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             V D+                +  +++ ++   P++   +  R  +GV +    K E  
Sbjct: 741 AIVPDDLVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYA 800

Query: 892 VSVERI 897
           + +  +
Sbjct: 801 LDMAFV 806


>gi|295110275|emb|CBL24228.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus obeum A2-162]
          Length = 748

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/731 (33%), Positives = 392/731 (53%), Gaps = 29/731 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K      L DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQEVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D   A + +  I +  LM  I+GPDFPTG +++ +  ++  Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVKAYMKDNTISVRGLMRYIKGPDFPTGGIVVNKDDLRKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDR 305
            +RG   +EK  G ++Q+V+TEIPY +   N    L  +A LV  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEVEKLKGGKKQLVITEIPYTMLGANIGKFLNDVASLVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+    + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F 
Sbjct: 302 EGIRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQIIEYHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL+K  ++  V  GL  A   +D ++ I+R S N E  ++ L++      
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        S  +  +   +  +E Q  AIL++RL +L GL  + ++ E       I 
Sbjct: 422 KFK--------SKASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEYQETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL +   +  +I +++ ++K E    RRT +      + +E  +    +   +   
Sbjct: 474 LYKDILENYDSMAAVIIKDMDAIKKEYGRKRRTAVENAEEAVYEEKKMEEMKVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K +  + Y   +      S            +F       +  F+  G ++  K   
Sbjct: 534 GYMKLIDQNAYERNKEAIHNESKY----------VFNCMNTDKICIFTDKGKMHTIKAAD 583

Query: 606 LPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P+   + +G    N+ + N   E++  + P            ++F TK    +  + ++
Sbjct: 584 IPLVRFRDKGTPADNLSNYNSAEEQMLYVAPV----GQIRTDRLLFVTKSSMCKLVEGAE 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    + KL   DE++ +    +   I+L +  G  +RF    I +   + ++GV
Sbjct: 640 FD-VAKRTIASTKLAEDDELIFIGGSAEMEQIVLQSHGGCFLRFLKQEISIM-KKTAIGV 697

Query: 725 RGISLAKGDQV 735
           RG+ LA  D +
Sbjct: 698 RGMKLADDDYL 708



 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +++   +L V++    K     +F ++ R          +K+ E   L+ +    + +QI
Sbjct: 617 QIRTDRLLFVTKSSMCKLVEGAEFDVAKR------TIASTKLAEDDELIFIGGSAEMEQI 670

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L S  G  +R    EI I  +   GV     A D+ +
Sbjct: 671 VLQSHGGCFLRFLKQEISIMKKTAIGVRGMKLADDDYL 708


>gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3]
          Length = 752

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622]
 gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622]
          Length = 813

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 282/784 (35%), Positives = 412/784 (52%), Gaps = 54/784 (6%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG-VEWNKKYVKCA 75
              S+ DE +  Y+ YA++VI  RA+PD+RDGLKPV RRILFGM     +    KY K A
Sbjct: 56  VPASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSA 115

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G VMG+YHPHG+A+IY+AL RMAQD+SLR  L++G GNFGS+DGD  AA RYTECRL
Sbjct: 116 KVVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRL 175

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LL +LGK TV FRP YDG+ QEPVV+ AR P +L+NG  GIAVGMATNIP H+L
Sbjct: 176 AMLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHL 235

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
           GE+VD  VA+I+NP +    L++ ++GPDFPTG  IL  +  +++ Y +G+GSI IRG  
Sbjct: 236 GELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEY 295

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E      +QIV+T IPY VNK+ ++ K  +LVRE+++  I D+RDES +   R+V+EL
Sbjct: 296 KLEDLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD-VRIVLEL 354

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREE 367
           K+ A+ ++++  LY+ T LQ+ F VN+  L           PER  L  IL  F+ FR +
Sbjct: 355 KKDANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFD 414

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV +R ++ L +   R H+L G       LDE+++IIR S   + A R+L+ R       
Sbjct: 415 VVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIAR------- 467

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L E Q  AILE++L +L  L    +  EL     EIK  
Sbjct: 468 -------------------FKLDEAQVDAILEMKLYKLARLEILVVEKELKEKRAEIKRI 508

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSH 544
             IL  ++++ G ++ EL  +K   +  RRTRI       ++   E  I  ED  V ++ 
Sbjct: 509 QGILKDKNKVWGTVRDELGEMKARYNDKRRTRIGGAGSEEMEFSAEAFIADEDAHVVITR 568

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKRV         R  K  S   +R+ D V  +   S   +++ FS+ G  Y  +  
Sbjct: 569 DGWVKRV---------REVKDPSTTRLREGDAVMAVLAGSLKANLVLFSNFGTAYVTRFN 619

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P       G+ +      + GER+ + +    D        +V  TK G   R  L  
Sbjct: 620 DVPAS--TGYGEPVQKFFKFDDGERVVSALSL--DARLPRPQKLVGVTKQGMGMRFLLEP 675

Query: 665 FIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +++  R+G+   K    DEI+ V+  T  + + + T+    +   ++ +   AG    G
Sbjct: 676 HLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELAGPG-KG 734

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V  I +  GD+V+    V  A  D        K           +        ++ S   
Sbjct: 735 VTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTGRGGKGHEMSKRD 794

Query: 784 NISE 787
            + E
Sbjct: 795 AVKE 798



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 18/250 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++       R  +I        E  +      E+  ++ T+ G   R             
Sbjct: 528 EMKARYNDKRRTRIGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRVREVKDPSTT--- 584

Query: 721 SVGVRGISLAKGDQVISMAI--VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
                   L +GD V+++    +      +                 +G  E +      
Sbjct: 585 -------RLREGDAVMAVLAGSLKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKF 637

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY-DFRISNRSGKGIRATDVSKINE 837
              E  +S         + Q ++ V+++G G R        +S R+G+       +K  E
Sbjct: 638 DDGERVVSALSLDARLPRPQKLVGVTKQGMGMRFLLEPHLEVSTRAGRRY-----AKTGE 692

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              ++ V PV D D + ++++K + +   V E+   +   KGV +      +RVV    +
Sbjct: 693 GDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELAGPGKGVTVIKVDGGDRVVDFLAV 752

Query: 898 RESEIVDEAE 907
             ++   + E
Sbjct: 753 SPAQKDAKLE 762



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 12/264 (4%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRN-KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           M F  +    +    V  T+ G V+R  ++ D             L   D +++V   + 
Sbjct: 549 MEFSAEAFIADEDAHVVITRDGWVKRVREVKDPSTTR--------LREGDAVMAVLAGSL 600

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           + +++L +  G       + +    G      +      G++V+S   +        + +
Sbjct: 601 KANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLV 660

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
              K     R L+    E  T      +  G   E    +       +  ++EK      
Sbjct: 661 GVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVC 720

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              +       GKG+    V   + +   +AV P   + ++   + KG  + +   +  +
Sbjct: 721 KVAEVNELAGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEV 780

Query: 873 ASRATKGVVIFSTAKDERVVSVER 896
             R  KG      +K + V  V R
Sbjct: 781 TGRGGKGH---EMSKRDAVKEVAR 801


>gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
 gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
          Length = 752

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++ SV+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKVAVKGKSNQSVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
          Length = 767

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/741 (35%), Positives = 393/741 (53%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R + L+  FS+NM V ++G  P   +L  +L
Sbjct: 299 RDESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R  V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRRNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             SW     +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 AESWG----RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L  E  +   ++ S       I  +L  ++           RRT+  E   + ++  E 
Sbjct: 472 ALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G++        RA +      +    +D D    LF   T   +L 
Sbjct: 532 MIEREPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLL 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y      LP G  +  G+ +  ++ L     I  I  +   E       ++ A
Sbjct: 584 VGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAEIHDIFVWRPAEK------LLLA 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + +   R+GK  + +               + + +  +  + + FP+S
Sbjct: 636 SSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRG-DHVAVVGENRKLLVFPVS 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 695 ELPEMA--KGKGVRLQKYKDG 713


>gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112]
 gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74]
          Length = 752

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 VSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
 gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
          Length = 772

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/822 (32%), Positives = 396/822 (48%), Gaps = 77/822 (9%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MTE     D+   +++   S+ +    + +YL YAI+V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MTEQPTLFDQLPPDDEHKESLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ ++   K  K A + G+V+GK HPHG+ ++YDAL RMAQD+S+R  LI+G GNFG
Sbjct: 61  AMNELRLDSEAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   A  LL+++ + TV+F+ NYDGS QEP +L AR P  L+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMAT IP+HNL EV    VA+I NP I    LMEII GPDFP G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAPNTI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------ 291
              Y  GRGS+ +R    IE+ +  + Q VV+E+P   +   +LE+I E+   K      
Sbjct: 241 SEIYENGRGSVKVRARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRAGKK 300

Query: 292 -----------RIVDIADL-RDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLF 337
                      + + I D  RDE+ R     ++     +  + D  +  L  +TSL+   
Sbjct: 301 ALSAEQVALRQQFLGILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLECNA 360

Query: 338 SVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P +  L  I+  ++ FR   V RRT + L +  DR H+L G    + N
Sbjct: 361 PVNLVMIGIDGRPRQKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETVLLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +D V+ IIR S  P+ A                                   LSE Q   
Sbjct: 421 IDAVIHIIRESDEPKAA-----------------------------LIDAFQLSERQADD 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E K   D+L + S +  +I +E+ + + +    R
Sbjct: 452 ILEIRLRQLARLEKIRIEQELAELRKEKKGLHDLLDNPSSMKRLIIREIEADRKKYGDAR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I E      ++   V E + V +S  G+V        R +   G   S +  +  D 
Sbjct: 512 RTLIEEAERATAEQKI-VDEPVTVIISQNGWV--------RQRTGHGLNLSAITFKSGDN 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   +   +L FSS G +Y   V +LP G  +  G  +     +   E I   +  
Sbjct: 563 LFSSFECRSTDFLLAFSSTGRIYTIPVHQLPGG--RGDGMPITTFAEIGIDETIVQYLVS 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-END 695
             D+S      V+ +   G     K SD +   R+GK  + L+  + +L      +    
Sbjct: 621 SPDKS------VLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDGETLLPPLVIPEASKS 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I + ++ G+ + F  + +RV +     GV  + L KG+++      L  D +    IC  
Sbjct: 675 IGVLSEKGRFLLFDATELRVLSS-GGHGVILMGLDKGEKI---RATLPVDDNGCLVICMA 730

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           K+ +     ISG+  +I +     + +G   E R     L+ 
Sbjct: 731 KNDNRYEVRISGN--QIETYTGKRARKGKPVETRFTPASLEN 770



 Score = 43.0 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 93/295 (31%), Gaps = 32/295 (10%)

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
             +   QA     I +  L + E+I       E       L+ +        R       
Sbjct: 442 FQLSERQADDILEIRLRQLARLEKIRIEQELAELRKEKKGLHDLLDNPSSMKRLIIREIE 501

Query: 666 IQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               + G     L    E  +  +    E   ++ ++ G               R   G+
Sbjct: 502 ADRKKYGDARRTLIEEAERATAEQKIVDEPVTVIISQNGWVR-----------QRTGHGL 550

Query: 725 --RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
               I+   GD + S       D        ++   S+  R+ +    ++   + D    
Sbjct: 551 NLSAITFKSGDNLFSSFECRSTD--------FLLAFSSTGRIYTIPVHQLPGGRGDGMPI 602

Query: 783 GNISEERCQE------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              +E    E      +   ++ +L   + G+G    + D     R+GK   + +  +  
Sbjct: 603 TTFAEIGIDETIVQYLVSSPDKSVLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDGETL 662

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               ++       +  I ++S+KG  +     E+R+ S    GV++    K E++
Sbjct: 663 LPPLVIP----EASKSIGVLSEKGRFLLFDATELRVLSSGGHGVILMGLDKGEKI 713


>gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
 gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
          Length = 752

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|283797753|ref|ZP_06346906.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291074428|gb|EFE11792.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 746

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 262/763 (34%), Positives = 414/763 (54%), Gaps = 31/763 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAEEVYLKDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD   A IDNP++  + L+  + GPDFPTG +I  +  + + Y TG G I +R  
Sbjct: 183 NLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGIIANKKDLASIYETGSGKIKLRAK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E      D++++V+TEIPY +        L  IAELV  K++ D+ D+ ++S+++G 
Sbjct: 243 MEVELGKRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ E 
Sbjct: 303 RIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVKGRPETLNLRGILKNYLDFQYEN 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ + LL K  ++  +  GL  A   +D ++ ++R S N + AR  L+    +A   K
Sbjct: 363 NTRKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDARACLINGDTSAIRFK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G +  +E Q  AILE+RL +L GL    +  E      +IKE  
Sbjct: 423 T--------PELEEDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            ILS +  +  +IK++L ++K E   PRRT I +G   + DE  +   ++V  +   GY 
Sbjct: 475 KILSDKGTMDQVIKEDLAAIKREFACPRRTLIEDGKEAVYDESAVEVREVVFVMDRFGYS 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + V  S Y   R             E+    +        +  F+  G +++ KV  +P+
Sbjct: 535 RIVDRSTYDRNRETI----------ENENPHVICCLNTDRICLFTDAGVLHQVKVTDIPL 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+   + G +  T+  F  + SS      +FAT+   ++R    +F   
Sbjct: 585 GKLRDKGTPIDNLCKFD-GTKEQTV--FVTNASSLQGKLFLFATRDAMLKRVPGEEFETN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           NR    A KL   D ++SV+   + ++++L T  G  +RF +  I V   +N+ GVRGI 
Sbjct: 642 NR-MVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISV-QKKNARGVRGIK 699

Query: 729 LAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGD 768
           L +G+ +  + ++         Y E+  ++  +   RR   G+
Sbjct: 700 LGRGEALEQVYLLGANTESVITYKEKQVHLNRLKQGRRDGKGN 742



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            L+ +  L  +     KR    +F  +NR          +K+ E  +LV+V P ++  ++
Sbjct: 615 SLQGKLFLFATRDAMLKRVPGEEFETNNR------MVAATKLQEGDSLVSVQPADEASEV 668

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L +D G  +R  ++EI +  +  +GV      + E +
Sbjct: 669 VLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEAL 706


>gi|170782025|ref|YP_001710357.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156593|emb|CAQ01744.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 848

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 281/760 (36%), Positives = 408/760 (53%), Gaps = 56/760 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H     +E  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 5   TTHTTP--DEPSERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMS 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VK AR++GEVMGK HPHG++AIYDA+ RMAQ ++LR+ LI+G GNFGS+D
Sbjct: 63  EMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQPFTLRVPLIDGHGNFGSLD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  +A  +++ L +D VDF PNYD +F +P VL A +PN+LVNG  G
Sbjct: 123 -DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGASG 181

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EVV     +ID+PD  LD LM  + GPD PTG  I+G +G+K+AY
Sbjct: 182 IAVGMATNMVPHNLIEVVGAARHLIDHPDATLDDLMAFVPGPDLPTGGTIIGLSGVKDAY 241

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS   R    +E  +  +  +VVTE+PY V    ++EKI + V+ K++  I ++ D
Sbjct: 242 LTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNVTD 301

Query: 302 ESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR    R+VIE+K G + + +L QLYRYT L+  FS+N VAL    P+   L  +L+ 
Sbjct: 302 LTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSINNVALVDGSPQTLGLKELLQV 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +VA R +VV RRT+Y L + ++R H+++GL IA+ ++DEV+++IR S + E AR  LM  
Sbjct: 362 YVAHRLDVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLMD- 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q   ILELRL RLT   R ++  E + L
Sbjct: 421 -------------------------VFDLSTLQADYILELRLRRLTRFSRIELEEERDRL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--------EDEDC 532
             EI E   IL+   RL  ++  EL  V D   TPRRT + E    +             
Sbjct: 456 QAEIAELEAILADPRRLRALVSTELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPVLE 515

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I      V +S  G   RV L         G     V     D V      ++ T +   
Sbjct: 516 IADVPCRVLLSTTGRAVRVDLPTDAP----GTPLQTVRRSSHDAVLTAIETTSRTRIGAI 571

Query: 593 SSLGFVYKEKVWRLPIGSPQA----RGKALINILSL-NQGERITTIMPFPEDESSWNNLY 647
           ++ G +       LP+    +     G  + + L L ++ ER+  ++    DE+      
Sbjct: 572 TNTGRLITMTPVDLPVVPVASVQLGAGVRIRDYLGLTDRKERVVALVALGTDEA------ 625

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   T+ G V+R   S          IA  L   DE++      + ++++  T   Q + 
Sbjct: 626 IALGTRQGVVKRVAPSALPAKPEYEVIA--LKKGDEVVGARQGAETDELVFVTSEAQLLH 683

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           FP  ++R      + G+ G++L  G  V+  + V    A+
Sbjct: 684 FPAVSVRPQGV-QAGGIAGVNLGAGAHVLFFSSVAPEGAE 722


>gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
          Length = 767

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/741 (35%), Positives = 394/741 (53%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R + L+  FS+NM V ++G  P   +L  +L
Sbjct: 299 RDESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R +V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             SW     +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 AESWG----RKFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L  E  +   ++ S       I  +L  ++           RRT+  E   + ++  E 
Sbjct: 472 ALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G++        RA +      +    +D D    LF   T   +L 
Sbjct: 532 MIEREPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLL 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y      LP G  +  G+ +  ++ L     I  I  +   E       ++ A
Sbjct: 584 VGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAEIHDIFVWRPAEK------LLLA 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + +   R+GK  + +               + + +  +  + + FP+S
Sbjct: 636 SSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRG-DHVAVVGENRKLLVFPVS 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 695 ELPEMA--KGKGVRLQKYKDG 713


>gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
 gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017]
 gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
          Length = 752

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 760

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 133

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 134 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 193

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I     I+  Y  GRGS+ +R V 
Sbjct: 194 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENGRGSVRMRAVW 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 254 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 309 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 369 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 415 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 460 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 519 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 570 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 623

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T  G+ + FP+ ++   +      +  I 
Sbjct: 624 RAGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLSKGKGNKIINIP 683

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 684 SAEAAKGDDGLAHLYVLPPQST 705



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 595 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 651 LLAITLAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 686


>gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 752

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|167746703|ref|ZP_02418830.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
 gi|167653663|gb|EDR97792.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 250/746 (33%), Positives = 400/746 (53%), Gaps = 48/746 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EHII ++            ++ MQ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MAEHIIRAE-----------FSEVMQKSYIDYAMSVICARALPDIRDGLKPVQRRVLYAM 49

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  ++ + K ARI G+ MGKYHPHG+++IY++L  M Q++   + L++G GNFGS+
Sbjct: 50  DELNLRHDRPHRKSARIVGDTMGKYHPHGDSSIYESLVVMEQEFKKGMPLVDGHGNFGSI 109

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RL+K      L DL K+ VDF  N+D + +EP VL  R PN+L+NG 
Sbjct: 110 EGDGAAAMRYTEARLKKFTQEVYLADLDKNVVDFISNFDETEKEPEVLPVRVPNLLINGA 169

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM T+IP HNLGEVVD  +A +++  +  + L+  I+GPDFPTG +++ +  IK 
Sbjct: 170 EGIAVGMTTSIPPHNLGEVVDAMIAYLEDESVANEDLLTYIQGPDFPTGGLVVNKKDIKT 229

Query: 240 AYATGRGSIVIRGVSHIEKTS--GDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIV 294
            Y  G G + +RG    E     G+++++V+TEIPY +   N    L  +  LV  K+  
Sbjct: 230 IYTEGSGKLKLRGKVVFEPGKKRGEKDKLVITEIPYTMIGANIGKFLSDVVNLVESKKTT 289

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           DIAD+ +ES ++G R+V+ELK+G   + + N LY+ T L+  F VNM+A+   +PE  +L
Sbjct: 290 DIADISNESSKEGIRIVLELKKGTDIERLKNLLYKKTKLEDTFGVNMLAIVDGRPETLSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             I+     F   +V R+ + LL+K  D+  V  GL  A   +D ++ I+R S N + A+
Sbjct: 350 RDIIAHHTEFHYGLVKRKYQTLLSKLYDQREVKEGLIKACDMIDLIIEILRGSKNLKEAK 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L +        K        SS ++     +  +E Q  AIL+LRL +L GL    +R
Sbjct: 410 ACLTKGEVGNIRFK--------SSESMIEACKLSFTEKQAEAILDLRLGKLIGLEILALR 461

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E   +   I E  DIL +   +  ++KQ+L+ +K E    RRT + +G   + +E+ + 
Sbjct: 462 EEYEEIVANIAEYEDILHNPVSMQRVMKQDLMKIKKEYQRERRTVVEDGAEAVFEEEPLK 521

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E +   +   GY K    + Y+  +                   +        +  F+ 
Sbjct: 522 EEQVYFVMDRFGYAKTFDKATYQRNQENASRDYKY----------IVPCMNTDKICIFTD 571

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATK 653
            G +++ KV  +P G  + +G  + N+ + +   E I  ++       +  +  + FAT+
Sbjct: 572 TGVMHQIKVLDIPAGKYKDKGTPIDNLGNYDSSDEAIIAVLA----AEAMTHDSLFFATE 627

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE------NDILLTTKLGQCVR 707
            G ++    ++F Q+ +    A KL   D +LSV+    E      + ++L TK G  +R
Sbjct: 628 QGMLKIVSGTEF-QVTKRTVSATKLSDGDALLSVKPLKTEGGLIKPDMVILETKEGVFLR 686

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGD 733
           F +  +     + +VGVRGI L K D
Sbjct: 687 FSLEEVPEK-KKGAVGVRGIKLNKDD 711



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 12/101 (11%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN---- 850
           +    +   +E+G  K  S  +F+++ R          +K+++  AL++V P+       
Sbjct: 617 MTHDSLFFATEQGMLKIVSGTEFQVTKR------TVSATKLSDGDALLSVKPLKTEGGLI 670

Query: 851 --DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             D +IL + +G  +R  + E+    +   GV      KD+
Sbjct: 671 KPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDD 711


>gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863]
          Length = 752

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFVTTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNKLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 44.9 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 85/265 (32%), Gaps = 36/265 (13%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNK----------LSDFIQINRSGKIAMKLDSRDEILS 686
            E E   + L  + A++    +  K            D     +  + A  +   D + S
Sbjct: 438 SELEKERDQLQGILASERKMNKLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPS 497

Query: 687 -VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              T        + +  G  +  P    +      +  V+G        V+    V    
Sbjct: 498 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA-VKG---KSNQPVV---FVDSTG 550

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             Y      +     Q   ++G          D  +           ++  +Q +L  S+
Sbjct: 551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML-----------MESDDQKLLMASD 599

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIR 864
            G+G   +  D    NR+GK +         E   ++    + D +D ++ ++  G ++ 
Sbjct: 600 AGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASDMLLAITQAGRMLM 654

Query: 865 VPVNEIRIASRATKGVVIFSTAKDE 889
            PV+++   S+  KG  I +    E
Sbjct: 655 FPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12]
 gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 777

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 262/748 (35%), Positives = 403/748 (53%), Gaps = 43/748 (5%)

Query: 1   MTEHIISSD------EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++     +      EE     TS  +   +   YL YA++ I+ RA+PD RDGLKPVHR
Sbjct: 1   MSDTTDDPNMDDPDAEEPGAAQTSEPLRRAIGARYLQYALSTIMHRALPDARDGLKPVHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQ
Sbjct: 61  RILYAMRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFG++DGD PAA RYTE RL  AA  L++ L ++ VDFR NYDG+  EP VL A +PN+
Sbjct: 121 GNFGNIDGDNPAASRYTEARLTAAAEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-G 233
           L NG  GIAVGMATNIP HNL E++DGC+ +I  P+   + L+E+I GPDFPTG VI+  
Sbjct: 181 LANGSSGIAVGMATNIPPHNLHELIDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEP 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           +  I  AYATGRG+  +R     E     + QIV+TEIPYQV K+ ++EKIA+L++ K++
Sbjct: 241 KESIAQAYATGRGAFRLRARWAREDLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKV 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERF 352
             +AD+RDES      ++    +    +V++  L+R + L++ FS+NM V ++G  P+  
Sbjct: 301 PILADIRDESADDVRIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVC 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L+AF+  R +V+ RR+++ L K   R  VL G  +A  NLD V+ IIR+  +P+ 
Sbjct: 361 SLREVLRAFLDHRRDVLGRRSRHRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKA 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   LM+  W+   ++      D++ Y   + G   L+EVQ  AIL +RL  L  L   +
Sbjct: 421 A---LMREDWSLKHVRA----TDEADYKTPAPGEGELTEVQAEAILNMRLRSLRRLEEME 473

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRI--VEGLL 525
           + +E ++L  E  E  D+L+  +     I  EL  V+ +         RRT       + 
Sbjct: 474 LISERDALMAERAELEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFAVATEMA 533

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           ++  ED I RE + V  S +G+++ +   V   Q         +  +D D    +F   T
Sbjct: 534 EVSLEDMIEREPITVVCSKMGWIRAMKGHVALDQ--------ALKFKDGDEGRFIFHAET 585

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWN 644
              +L F + G  Y      LP G  +  G+ +  ++ L N+ E +   +  P       
Sbjct: 586 TDKLLAFGANGRFYTLSCAALPGG--RGMGEPIRLMVDLPNEAELVDLFLHVP------- 636

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              ++ A+  G+      ++ +   R+GK  + + S    L        + I    +  +
Sbjct: 637 GRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAG-DAIAAVGENRK 695

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + F    +         GVR      G
Sbjct: 696 LLVFAADELPEMG--RGKGVRLQKYKDG 721



 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L +  + ++  S+ G G      +     R+GK +          +   VA       D 
Sbjct: 633 LHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVA------GDA 686

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           I  V +   L+    +E+    R  KGV +      
Sbjct: 687 IAAVGENRKLLVFAADELPEMGRG-KGVRLQKYKDG 721


>gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
 gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
          Length = 754

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/796 (31%), Positives = 405/796 (50%), Gaps = 72/796 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + K+ K
Sbjct: 10  DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D P   ++ L E I+GPD+PT A +I  R  +   Y TG+GS+ +R
Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYR 309
            V HIE        I+VT +P+QV+ A +LE+IA L++ K  ++  +ADLRDESD +   
Sbjct: 250 AVYHIEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
             V+I        +V++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR 
Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDGKPQLKNLRNLLVEWLEFRI 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL IA  NLDEV+ IIR + +P   + EL+ R      
Sbjct: 365 NTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHP---KAELIAR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q   IL+ RL +L  L    +R+E ++L  E  +
Sbjct: 416 --------------------FELSEIQADYILDTRLRQLARLEEMKLRDEQDALLKEQAK 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L S ++L  +++ EL+   +     RR+ IV+      + + + +  E + V +S 
Sbjct: 456 LQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTETELLPNEKITVVLSE 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        R+ +      +G+  +  D         ++   +F  S G  Y     
Sbjct: 516 KGWV--------RSAKGHDIDATGLSYKAGDGFKTAAAGRSNQFAVFIDSTGRSYSVPAH 567

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   L+   G     ++  P+D     +   V A+  G     K  D
Sbjct: 568 TLP--SARGQGEPLTGRLTPPPGANFECVL-LPDD-----DALYVIASDAGYGFVVKGED 619

Query: 665 FIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---R 719
               N++GK  + L +  +++        + N +   T  G+ + F IS +         
Sbjct: 620 LQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTTEGRLLVFKISDLPQLGKGKGN 679

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             +G+ G  +A  ++ ++   V+   +           + A +R +S   +++   K + 
Sbjct: 680 KIIGIPGERVASREEYVTDIAVIPEGSTL--------VLQAGKRTLSLRPDDLEHYKGER 731

Query: 780 SVEGNISEERCQELKL 795
              GN      Q +  
Sbjct: 732 GRRGNKLPRGFQRVDA 747



 Score = 41.1 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 14/122 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +   C  L   +   +  S+ G+G      D +  N++GK + +           ++   
Sbjct: 589 ANFECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----NNAKVILPR 643

Query: 846 PVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERI 897
           PV+D +   +  V+ +G L+   ++++    +  KG  I         +++E V  +  I
Sbjct: 644 PVDDRESNWLASVTTEGRLLVFKISDLPQLGKG-KGNKIIGIPGERVASREEYVTDIAVI 702

Query: 898 RE 899
            E
Sbjct: 703 PE 704


>gi|295395841|ref|ZP_06806029.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971376|gb|EFG47263.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 854

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 263/750 (35%), Positives = 383/750 (51%), Gaps = 64/750 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++ EM++S+L YA +VI  RA+PD RDGLKPV RRI++ M  MG+  ++ +VK
Sbjct: 3   DHIVDVDVSQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMGDMGLRPDRPHVK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            +RI G+VMGK HPH + AIYDAL R++QD+ +R+ L++G GNFG++D D PAA RYTE 
Sbjct: 63  SSRIVGDVMGKLHPHSDVAIYDALVRLSQDFVMRVPLVDGHGNFGTLD-DGPAAPRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  ++  L +D VDF PNYD S  +P VL + +PN+LVNG  GIAVGMATN+  H
Sbjct: 122 RLDDAALTMIAGLDEDVVDFVPNYDNSLTQPEVLPSAFPNLLVNGASGIAVGMATNMAPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N GEV+     +I+NP   +  LM  + GPD PTG  I+G   I+ AY TGRG+   R  
Sbjct: 182 NPGEVIAAARHLIENPQATVSELMRYVPGPDLPTGGRIIGLDSIREAYETGRGTFRTRAT 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
              E  +  R+ IVVTE+PY V    ++EK+ + V+ KR+  IA + D SDR  G R+VI
Sbjct: 242 VKFENITARRKGIVVTELPYLVGPERVIEKVKDQVQAKRLTGIASIDDYSDRKHGLRLVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            +K G + + +L +LYR T ++  F +N V L   +P    L  +L+ FV  R  +  RR
Sbjct: 302 GIKNGFNPEAVLEELYRLTPMEDSFGINNVCLVEGQPRTLGLKPLLEVFVDHRISITRRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+DR H++ GL IA+ ++DEVV++IR S +   AR  LM              
Sbjct: 362 TVFQLGKAKDRLHLVEGLLIAILDIDEVVQLIRSSDDATQARTRLMD------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL+L+L RLT   R ++  E + L   I+    IL 
Sbjct: 409 -------------VFDLSEIQATYILDLQLRRLTKFSRIELEAERDELKSRIEYLQGILD 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG------LLDMEDEDCIVREDMVVTVSHLG 546
              +L  ++  EL    D +D+PRRT +VEG            +  +  E   V  S   
Sbjct: 456 DDDKLRALVSDELQETSDRIDSPRRTVLVEGNLKELRAAKKGTKLTVADEPCWVLFSTSQ 515

Query: 547 YVKRVPLSV-YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            + R        AQ R             D +      ++ +++   ++ G V    V  
Sbjct: 516 RLARTTGQEPLSAQGR---------RASHDALVSQIATTSRSTIAAVTNTGRVVGVDVVS 566

Query: 606 LPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           LP   PQ      A G  +    +L + E++  ++  PE E        V  TK G ++R
Sbjct: 567 LPQLPPQAARPTVAGGVRVSEYFTLEKNEKVIGLID-PERE-------CVVGTKQGVIKR 618

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI--LLTTKLGQCVRFPISAIRVFA 717
              +D     + G   + L  +DEI+ +      N    +  T   Q + F +  +R   
Sbjct: 619 INGNDQF---KDGSTLINLKPKDEIVGLAQPEDLNTHSAVFITSNAQLLAFDLEGVRAQG 675

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              + GV GI +A    VI    V     +
Sbjct: 676 Y-AASGVAGIRVASDAHVIGFYAVDSHQPN 704


>gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1]
          Length = 752

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     A  RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAEMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
 gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
          Length = 751

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 253/758 (33%), Positives = 394/758 (51%), Gaps = 67/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I    E  E G+  +++    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDQI----EINEDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 57  SELGLKNSAKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +LG+ TVD++PN+DG+ +EPV+L AR PNVL+NG 
Sbjct: 117 DDPKSFAAMRYTESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNGA 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNLGEV   C+ ++ +P   LD L E + GPDFPT A +I  R  + 
Sbjct: 177 TGIAVGMATDIPPHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHELI 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             YATGRGSI +R V   E +      IV+T +P+QV+ A +LE+IA+ +  K++  + D
Sbjct: 237 RMYATGRGSIKMRAVYTREGSD-----IVITALPHQVSGARILEQIAQQMNAKKLPMVQD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L+  + VNM  +    +P    L 
Sbjct: 292 LRDESDHENPTRLVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDGRPRVRGLY 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L+K  +R H L GL IA  N+DEV+ IIR   +P   + 
Sbjct: 352 DILSEWLEFRITTVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDP---KP 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            +S++Q  AILEL+L  L  L    IR 
Sbjct: 409 RLMER--------------------------FGISDIQAEAILELKLRHLAKLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L  E K+   +L S  +L   I +EL +  +     RR+ ++  E    M++ + +
Sbjct: 443 EQAELEKERKDLESVLGSAQKLKNKIVKELEADIERYGDARRSPLIEREEARAMDETELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      +G+  +  D +  +    ++ +V+F  
Sbjct: 503 GAEPVTVILSQKGWV--------RAAKGHDIDAAGLSYKTGDALLGIAQGKSNQTVIFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ LI  L+   G     ++         ++   + A+ 
Sbjct: 555 STGRSYTLPAHGLP--SARGQGEPLIGKLTPPPGASFEALLM------GADHDRYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPIS 711
            G     KLSD    N++GK  + +    ++L+    +  +   +      G+ + FP+ 
Sbjct: 607 AGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDREYVAAVANDGRLLVFPLK 666

Query: 712 AIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHAD 745
            +   A      + GI  AK     + ++ + ++  AD
Sbjct: 667 ELPELARGKGNQMMGIPSAKAKAREEYLVDVLLMTEAD 704


>gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 752

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107]
 gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107]
          Length = 752

 Score =  511 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 258/812 (31%), Positives = 416/812 (51%), Gaps = 79/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +  + EE      +S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTEIPVLPEAEER-----ISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSP 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LLD+LG+ TVD++PN+DG+  EP V  AR PN+L+NG 
Sbjct: 116 DDPKSFAAMRYTESRLTKYSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP HNL EVV+ CV ++DNP   +  L + + GPD PT A I+  R  + 
Sbjct: 176 TGIAVGMATDIPPHNLREVVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDELI 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V   ++ SGD   IV+T +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 236 KMYETGRGSVRMRAVWQKDEESGD---IVITALPHQVSGAKILEQIAAQMQAKKLPMVAD 292

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        + ++  L+  T L+  + VNM  +    +P   +L 
Sbjct: 293 LRDESDHENPTRLVVVPRSNRVDLEQVMQHLFATTELERTYRVNMNVIGIDGRPAVKSLS 352

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +++FR     RR +Y L+K   R H+L GL IA  NLDEV+RIIR   +P   + 
Sbjct: 353 KILGEWLSFRTVTTRRRLQYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDP---KA 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM+R                            L+E QT  ILE +L +L  L    IR 
Sbjct: 410 ELMKR--------------------------FGLTEDQTEYILETKLRQLARLEEMKIRG 443

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  +   +L S  +L  ++++ELL   ++    RR+ IV       + + + +
Sbjct: 444 EQSDLEKERDQLQSVLGSAVKLKNLVRKELLQAAEQYGDDRRSPIVVRAEAQALSETELM 503

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R+ +      +G+  +  D         ++ +V+   
Sbjct: 504 SVEPITVVISDKGWI--------RSAKGHDIDPTGLSYKAGDSFKFAVHGKSNQNVILLD 555

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   ++   G     ++   +D+       V+ A+ 
Sbjct: 556 STGRSYAIPAHNLP--SARGQGEPLSGRINPPSGATFEGVLMGADDQR------VLLASD 607

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPIS 711
            G     KL D    N+SGK  + L    ++L  +         +   +  G+ + FP++
Sbjct: 608 AGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQALLAAVSNDGRLLVFPVT 667

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            +   A     G + +++      A+ + V++++++L            +  + + +R I
Sbjct: 668 ELPELA--RGKGNKIMNIPSARAAAREEFVVAVSVILPGQ---------VLTLYSGKRTI 716

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +    ++   K +    GN      Q++   E
Sbjct: 717 TLKLGDLEHYKGERGRRGNKLPRGFQKVDKAE 748


>gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
 gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
          Length = 757

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 383/732 (52%), Gaps = 60/732 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N 
Sbjct: 3   ELTHDGAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  +++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + A  LL +LG+ TVD+ PN+DG+  EP +L AR PNVL+NG  GIAVGMAT
Sbjct: 123 RYTESRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    +A++ NP   L+ L+E ++GPDFPT A +I  +  ++  Y TGRGS
Sbjct: 183 DIPPHNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +  +E       + V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWTVEDG-----EAVISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + VNM  +    +P    L  IL  ++ +
Sbjct: 298 PTRLVIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDGRPAVKNLHEILSEWLVY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L K   R H+L GL +A  NLDEV+ IIR    P   ++ LMQR    
Sbjct: 358 RRDTVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIRTKDEP---KQVLMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L  L  L    +R E + L  E 
Sbjct: 411 ----------------------FELSETQADAILELKLRHLAKLEEMKLRGEQDELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   IL+S  +L  ++K+E+ +        RR+ ++E      + + + +  E + V +
Sbjct: 449 DKIQAILASERKLSNLLKKEIEADDAAYGDARRSPLIERGEAKALSENELMPSEPVTVIL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      SG+  R  D         ++  V+F  S G  Y  +
Sbjct: 509 STMGWV--------RSAKGHDIDPSGLGYRSGDNYLSSVRGKSNQPVVFIDSTGRSYALE 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  +  ++   ++        ++ A+  G       
Sbjct: 561 PACLP--SARGQGEPLTGKLTLPPGAAVEQMLTGADERK------LLMASDAGYGFVCSF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L    +++         + +L  T+ G+ + FP+  +   +    
Sbjct: 613 SDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLALTEAGRLLMFPVDDLPQLS--KG 670

Query: 722 VGVRGISLAKGD 733
            G + IS+   D
Sbjct: 671 KGNKIISIPSAD 682


>gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83]
          Length = 752

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 VSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSLMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|124021719|ref|YP_001016026.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962005|gb|ABM76761.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 829

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 285/851 (33%), Positives = 449/851 (52%), Gaps = 55/851 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S R  +++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   LD++G++TVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  PD+  D L+ +I GPDFPTG  IL  TGI   Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  +VVTE+PYQ++KA  +EK+A+LV   +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A+ + +L  L+R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RRT + L K + R  V+ GL  A+  L  V+ +I+ + +   AR  LM +      
Sbjct: 363 LTVIRRTNHALGKTKTRLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQ------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLT L +  +R E   L  + ++
Sbjct: 417 --------------------LDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQGKQEQ 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--------EDEDCIVREDM 538
              +L +R  +L ++ QEL  +K   + PRRTR+VEG  D+             + R+  
Sbjct: 457 LQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQA 516

Query: 539 VVTVSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
           +  +   G +     S  +  + +  G+       +  D       +  +     +L  +
Sbjct: 517 LSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLGDGPSPARLILPIEPAPRLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V     W      P +  + L   L     E +  I P P D+    NL +   + 
Sbjct: 577 NNGRV-ALVRWEFAGQQPGSLERFLPGGLEK---ETLINIFPLPVDQ----NLSLGLLSS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SA 712
            G  +R  L + ++++      +KL     + S   C   +D++L + +G+ +R  + + 
Sbjct: 629 DGRFKRLPLEEVMELSGRAATIVKLKDGVVLKSAFICKANDDVILASSIGRVIRINVNND 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                G+ + G   + L   + V+  ++   + ++         K        I      
Sbjct: 689 SMPLMGKLAQGPMTMRLLPEEMVVGAISCPPNCESTVLLVTRLGKFAKLLVSSIRVCQRG 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                  +  + +  ++R  ++    + +  VS +G   R  + +  ++      +   +
Sbjct: 749 DLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQGRHGRIEAGELELTMPIKPNLNIME 808

Query: 832 VSKINEIGALV 842
           +    EI  LV
Sbjct: 809 LKDNEEIQKLV 819



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 804 SEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR    +   +S R      A  + K+ +   L + F    ND +IL S  G +
Sbjct: 627 SSDGRFKRLPLEEVMELSGR------AATIVKLKDGVVLKSAFICKANDDVILASSIGRV 680

Query: 863 IRVPV--NEIRIASRATKGVVIFSTAKDERVVS 893
           IR+ V  + + +  +  +G +      +E VV 
Sbjct: 681 IRINVNNDSMPLMGKLAQGPMTMRLLPEEMVVG 713


>gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
 gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
          Length = 754

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 248/796 (31%), Positives = 399/796 (50%), Gaps = 74/796 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H   S E    G+    +    + +YL YA+ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDHNAMSLE----GVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ ++ R  L++GQGN+G+ 
Sbjct: 57  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EP +L +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV   C  +++NP  +L+ LM  ++GPD+PT A +I  RT I 
Sbjct: 177 TGIAVGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +        +IV+T +P+QV+ + ++E+IA  ++ K++  + D
Sbjct: 237 KIYQTGRGSVKMRAVYQVIDG-----EIVITALPHQVSGSKLIEQIASQMQAKKLPMVTD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        D ++  L+  T L+  + VN+  L    +P    L 
Sbjct: 292 LRDESDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDNRPGVRDLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR + V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+ A  
Sbjct: 352 SILSEWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            LSE Q  AILE++L +L  L    IR 
Sbjct: 410 -LMSR--------------------------FGLSEKQAEAILEIKLRQLAKLEEIKIRA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E  +   IL S  RL  ++K+ELL+  +     RR+ +VE      + +++  
Sbjct: 443 EQEELAAERDKLQTILGSERRLKTLVKKELLADAETYGDDRRSPLVERGEARALTEQELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S   +         R  +        +  R  D         ++  V+F  
Sbjct: 503 PAEPVTVVMSQKAWG--------RCAKGHDVEPESLSYRAGDGYLAHARGRSNQPVVFLE 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ L    +L  G R+  ++   +D+      + + AT 
Sbjct: 555 SSGRAYTTEPHSLP--SARSQGEPLSGRFNLVAGARLEHVVMGQDDD------HYLMATD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G     +  + +  N++GK  + + +  EIL  +       + +L  +  G+ + FP+S
Sbjct: 607 AGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQANDRLLAISTEGRMLLFPLS 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            + V A      + GI        ++ +   +VL   A           + A +R ++  
Sbjct: 667 QLPVLAKGKGNKIIGIPSERAKSREEYVKHLVVLPQGAQI--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGN 784
           + ++     +    GN
Sbjct: 719 SSDLEHYLGERGRRGN 734


>gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
 gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
          Length = 767

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/741 (35%), Positives = 394/741 (53%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R + L+  FS+NM V ++G  P   +L  +L
Sbjct: 299 RDESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R +V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             SW     +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 AESWE----RRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L  E  +   ++ S       I  +L  ++           RRT+  E   + ++  E 
Sbjct: 472 ALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G++        RA +      +    +D D    LF   T   +L 
Sbjct: 532 MIEREPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLL 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y      LP G  +  G+ +  ++ L     I  I  +   E       ++ A
Sbjct: 584 VGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAEIHDIFVWRPAEK------LLLA 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + +   R+GK  + +               + + +  +  + + FP+S
Sbjct: 636 SSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRG-DHVAVVGENRKLLVFPVS 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 695 ELPEMA--KGKGVRLQKYKDG 713


>gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 752

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 383/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   L+ L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            ++E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGITETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++++EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNSLLRKELQADSDAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  I  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATIEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG---RNSVGVR 725
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +       V + 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDENDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIVNIP 675

Query: 726 GISLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDSLAHLYVLPPQST 697



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +    + +   +   V +   ++ND 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIE--DENDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIVNIPSAE 678


>gi|148272833|ref|YP_001222394.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830763|emb|CAN01703.1| putative topoisomerase II subunit A [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 848

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 282/758 (37%), Positives = 409/758 (53%), Gaps = 54/758 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              ++ +E  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M +M
Sbjct: 5   TTNTTPDEPAERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSEM 64

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK AR++GEVMGK HPHG++AIYDA+ RMAQ ++LR+ LI+G GNFGS+D D
Sbjct: 65  GLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQSFTLRVPLIDGHGNFGSLD-D 123

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE RL  +A  +++ L +D VDF PNYD +F +P VL A +PN+LVNG  GIA
Sbjct: 124 GPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGASGIA 183

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV     +ID+PD  LD LM  + GPD PTG  I+G +G+K+AY T
Sbjct: 184 VGMATNMVPHNLIEVVGAARHLIDHPDASLDDLMSFVPGPDLPTGGTIIGLSGVKDAYLT 243

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS   R    +E  +  +  +VVTE+PY V    ++EKI + V+ K++  I ++ D +
Sbjct: 244 GRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNVTDLT 303

Query: 304 DRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR    R+VIE+K G + + +L QLYRYT L+  FSVN VAL    P+   L  +L+ +V
Sbjct: 304 DRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSVNNVALVDGSPQTLGLKELLQVYV 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A R EVV RRT+Y L + ++R H+++GL IA+ ++DEV+++IR S + E AR  LM    
Sbjct: 364 AHRLEVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLMD--- 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS +Q   ILELRL RLT   R ++  E + L  
Sbjct: 421 -----------------------VFDLSTLQADYILELRLRRLTRFSRIELEEERDRLQA 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--------EDEDCIV 534
           EI E   IL+   RL  ++  EL  V D   TPRRT + E    +             I 
Sbjct: 458 EIAELEAILADPRRLRALVSTELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPVLEIA 517

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                V +S  G   RV L         G     V     D V      ++ T +   ++
Sbjct: 518 DVPCRVLLSTTGRAVRVDLPTDAP----GTPLQTVRRSSHDAVLTAIETTSRTRIGAITN 573

Query: 595 LGFVYKEKVWRLPIGSPQA----RGKALINILSL-NQGERITTIMPFPEDESSWNNLYVV 649
            G +       LP+    +     G  + + L L ++ ER+  ++    DE+      + 
Sbjct: 574 TGRLITMTPVDLPVVPVASVQLGAGVRIRDYLGLADRKERVVALVALGTDEA------IA 627

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G V+R   S          IA  L   DE++      + ++++  T   Q + FP
Sbjct: 628 LGTRQGVVKRIAPSALPAKPEFEVIA--LKKGDEVVGARQGAETDELVFVTSEAQLLHFP 685

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
             ++R      + GV G++L  G +V+  + V    A+
Sbjct: 686 AVSVRPQGI-QAGGVAGVNLGAGARVLFFSSVAPEGAE 722



 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 7/100 (7%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  KR +                  + K +E   +V      + D+++ V+ +  L+
Sbjct: 630 TRQGVVKRIAPSALPAKP----EFEVIALKKGDE---VVGARQGAETDELVFVTSEAQLL 682

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             P   +R       GV   +     RV+    +      
Sbjct: 683 HFPAVSVRPQGIQAGGVAGVNLGAGARVLFFSSVAPEGAE 722



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 27/217 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVF---AGRNSVGVRGIS-----LAKGD 733
           D +L+    T    I   T  G+ +      + V    + +   GVR I        + +
Sbjct: 554 DAVLTAIETTSRTRIGAITNTGRLITMTPVDLPVVPVASVQLGAGVR-IRDYLGLADRKE 612

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+++  +   +A        +    A   L +    E+ +LK    V G        E 
Sbjct: 613 RVVALVALGTDEAIALGTRQGVVKRIAPSALPAKPEFEVIALKKGDEVVGARQGAETDE- 671

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ V+ +       +   R       G+   ++     +    +V P  +  ++
Sbjct: 672 ------LVFVTSEAQLLHFPAVSVRPQGIQAGGVAGVNLGAGARVLFFSSVAP--EGAEV 723

Query: 854 ILVSDKGTLI------RVPVN---EIRIASRATKGVV 881
           + +S     I      R  V+   +     RAT GV 
Sbjct: 724 VTISASSATIAGVDPGRAKVSAFGDFPRKGRATGGVR 760


>gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 753

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 251/796 (31%), Positives = 401/796 (50%), Gaps = 72/796 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+ +EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R    ++  ++  L+  T L+S + VN+  +    KP+   L  +L  ++ FR   
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLGEWLTFRIGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   + EL+ R        
Sbjct: 365 VRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---KAELIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q   IL+ RL +L  L    +R+E  +L  E  + L
Sbjct: 414 ------------------FGLSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S S+L  +++ EL++  +     RR+ IV       + + + +  E + V +S  G
Sbjct: 456 ALLGSESKLRKLVRAELIADAETYGDNRRSPIVARAEAKALSENELMPTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D      I  ++   +F  S G  Y      L
Sbjct: 516 WV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L    G     ++  PED     +   V A+  G     K  D  
Sbjct: 568 P--SARGQGEPLTGKLQPPPGATFECVL-MPED-----DALYVIASDAGYGFVVKGEDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVF-----AGR 719
             N++GK  + L +  +++        ++N +   T  G+ + F IS +         G 
Sbjct: 620 AKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKISDLPQLGKGKGKGN 679

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             +G+ G  +A  ++ ++   V+   A           + A +R +S   E++   K + 
Sbjct: 680 KIIGIPGERVASREEYVTDLAVIAQGATL--------VLQAGKRTLSLKPEDLEHYKGER 731

Query: 780 SVEGNISEERCQELKL 795
              GN      Q +  
Sbjct: 732 GRRGNKLPRGFQRVDA 747


>gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94]
 gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94]
          Length = 752

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 VSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   +L   + 
Sbjct: 676 SAEAARGEDGLAQLYILPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont]
          Length = 757

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/730 (33%), Positives = 381/730 (52%), Gaps = 58/730 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EMIQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV +  V +ID P+  LD L+EI++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I  R V   E       ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 IRQRAVWKKEDG-----EVVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ +      D+  ++N L+  T LQ  + VN+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDNRPAVKNLLEILSEWLVY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L +   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E   L  E 
Sbjct: 411 ----------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQAELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+ELL+     D  RR+ +   E    + + + +  E + + +
Sbjct: 449 DQLQAILASDRKMSNLLKKELLADSQTYDDDRRSPLHEREEAKALSENELVSAEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDPAGLSYKAGDSYRAAARGKSNQPVAFIDSTGRSYTLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PTSLP--SARGQGEPLTGKLTPPPGAVIEQVLMEADDQK------LLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L    E+++       ++ +L  T+ G+ + FP++ +   +    
Sbjct: 613 ADLVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAITQAGRMLMFPVADLPQMSKGKG 672

Query: 722 VGVRGISLAK 731
             +  I  A 
Sbjct: 673 NKIISIPSAD 682



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 90/275 (32%), Gaps = 38/275 (13%)

Query: 637 PEDESSWNNLYVVFATKHGNVR----------RNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E E   + L  + A+                +    D        + A  L    E++S
Sbjct: 442 AELEKERDQLQAILASDRKMSNLLKKELLADSQTYDDDRRSPLHEREEAKALSEN-ELVS 500

Query: 687 VETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            E  T        + +  G  +          + +     R  +  K +Q ++   +   
Sbjct: 501 AEPVTIVLSQMGWVRSAKGHDI-----DPAGLSYKAGDSYRAAARGKSNQPVAF--IDST 553

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
              Y      +     Q   ++G          +  +           ++  +Q +L  S
Sbjct: 554 GRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVIEQVL-----------MEADDQKLLMAS 602

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL-VSDKGTLI 863
           + G+G   +  D    NR+GK +         E   ++A   V+  D ++L ++  G ++
Sbjct: 603 DAGYGFICTFADLVSRNRAGKALLTLP-----ENAEVMAPLAVHSGDDMLLAITQAGRML 657

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             PV ++   S+  KG  I S    +    V++++
Sbjct: 658 MFPVADLPQMSKG-KGNKIISIPSADAAAGVDKLQ 691


>gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 752

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ I  V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRIGAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLMEGDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T+ G+ + FP+ ++   +      +  I 
Sbjct: 616 RAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               AKGD  ++   VL   + 
Sbjct: 676 SAEAAKGDDGLAHLYVLPPQST 697



 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIE----DEHDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 643 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 678


>gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 754

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/758 (33%), Positives = 396/758 (52%), Gaps = 69/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDMTM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGV 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV    V +IDNP  DLDALME ++GPD+PT A +I  +  +K
Sbjct: 174 TGIAVGMATDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V H E        IV+T +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 234 KVYRTGRGSIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVED 288

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        + ++N L+  T L+  F VN+  L    +P+   L+
Sbjct: 289 LRDESDHENPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLV 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ +R   V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + 
Sbjct: 349 SIISEWLEYRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDP---KA 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L+ +Q  AILE++L +L  L    IR 
Sbjct: 406 ELMSR--------------------------FDLTAIQADAILEIKLRQLAKLEEIKIRG 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E +    +L S  RL  +IK+ELL+  +     RR+ +VE      + + D I
Sbjct: 440 EQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDDRRSPMVERAEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      S +  +  D         ++   +F  
Sbjct: 500 PSEPITVVLSEKGWI--------RHAKGHEVDPSTLSYKSGDSYLAHARGKSNQPAIFLG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  +  +M   EDE  W     + A+ 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPITGRLNLTPGSNMRQVM-MAEDEQLW-----LMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K SD +  N+SGK  + L    ++++ +     + + IL  T  G+ + FPI 
Sbjct: 604 AGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADA 746
            +          +  I  A+    ++ +S   VLH  A
Sbjct: 664 DLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGA 701



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  
Sbjct: 584 SNMRQVMMAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTLP-----ENAQVMAPQ 638

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + D  +DQI+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 639 EIRDIEHDQILAITNEGRMLLFPIKDLPQLGKG-KGNKIINI 679


>gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
 gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
          Length = 752

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLLPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82]
          Length = 752

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L  R PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGMAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004]
          Length = 751

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/751 (33%), Positives = 392/751 (52%), Gaps = 63/751 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EITHDGVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EVV   VA++DNP+  LD +ME I+GPD+PT A +I  +  I+  Y  GRGS
Sbjct: 183 DIPPHNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDIRKIYKNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+++     +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++N L+  T L+  + VN+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDNRPNVKGLVEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V  R  Y L K   R H+L GL  A  ++DEV++IIR    P+     LMQR    
Sbjct: 358 RRETVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FELTETQAEAILELKLRHLAKLEEVKIRGEQDGLAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   IL S  +L  ++K+E+++  +     RR+ + E      M D D +  E + V +
Sbjct: 449 DKLQAILGSERKLSTLLKKEIIADAENYGDHRRSPLKERSEAKAMSDHDILPSEPITVVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  + G  Y   
Sbjct: 509 SEMGWV--------RSAKGHEIDPAGLNYKSGDSFRSAARGKSNQPVVFIDTTGRSYSVD 560

Query: 603 VWRLPIGSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              LP  S + +G+ L   +L+L  G  I  ++   E++        + A+  G      
Sbjct: 561 PLDLP--SARGQGEPLTGKLLALPAGASIEHLLIAKEEQK------FLMASDAGYGFICT 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGR 719
            SD I  NR+GK  + L    +++     T  Q++ +L  TK G+ + FP++ +   +  
Sbjct: 613 FSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLLAITKEGRMLMFPVADLPQLSKG 672

Query: 720 NSVGVRGI---SLAKGDQVISMAIVLHADAD 747
               +  I     A G+ ++S  +VL   + 
Sbjct: 673 KGNKIVSIPAAQAASGEDMLSWLLVLPVQSS 703



 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +EQ  L  S+ G+G   +  D    NR+GK +        N             +D 
Sbjct: 592 IAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITL---PENAKVMQPLEITNEQDDM 648

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++ +G ++  PV ++   S+           K  ++VS+   + +   D
Sbjct: 649 LLAITKEGRMLMFPVADLPQLSK----------GKGNKIVSIPAAQAASGED 690


>gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355]
          Length = 757

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/748 (32%), Positives = 389/748 (52%), Gaps = 61/748 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   ELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    +A+ID+P   LDAL+EI++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +  R V   E       ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRQRAVWKKEDG-----EVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQSELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+EL +  +     RR+ +   E    + + + +  E + + +
Sbjct: 449 DQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++  PE++       ++ A+  G       
Sbjct: 561 PTSLP--SARGQGEPLTGKLTPPPGAVMEQVLMEPEEQR------LLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D I  NR+GK  + L     +++      +++ +L  T+ G+ + FP+  +   +    
Sbjct: 613 NDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADA 746
             +  I     A G   ++  ++L   +
Sbjct: 673 NKIISIPSADAASGADKLAWLMILPPGS 700



 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 20/266 (7%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK-LDSRDE---ILSVETCTQ 692
            E E   + L  + A++       K       N  G      L  R+E   +   E    
Sbjct: 442 SELEKERDQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPS 501

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E   ++ +++G         I         G   ++ A+G     +A +      Y    
Sbjct: 502 EPVTIVLSQMGWVRSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDP 561

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +     Q   ++G          +  +           ++ +EQ +L  S+ G+G   
Sbjct: 562 TSLPSARGQGEPLTGKLTPPPGAVMEQVL-----------MEPEEQRLLMASDAGYGFIC 610

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  D    NR+GK +     +        V     +++D ++ ++  G ++  PV E+  
Sbjct: 611 TFNDLISRNRAGKALLTLPENARVMTPMAVH----HEDDMLLAITQAGRMLMFPVGELPQ 666

Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898
            S+  KG  I S    +     +++ 
Sbjct: 667 MSKG-KGNKIISIPSADAASGADKLA 691


>gi|308234790|ref|ZP_07665527.1| DNA topoisomerase IV subunit A [Gardnerella vaginalis ATCC 14018]
 gi|311114503|ref|YP_003985724.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945997|gb|ADP38701.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 889

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 284/932 (30%), Positives = 450/932 (48%), Gaps = 126/932 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +     Y+
Sbjct: 18  KENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLTPEHAYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ T
Sbjct: 137 ARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +P+  LD LM+I+ GPD+P G +I+GR+GI+ AY TGRG+   R 
Sbjct: 197 HNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPGGGIIIGRSGIREAYETGRGAFTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +HIE  +  ++ I+VTE+P+ V    +LE+I++ ++ +++  I+   D +DR    R+V
Sbjct: 257 KTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGISGAIDLTDRHNGTRIV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWILHRRTVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ LNKA++R H++ GL +A+ ++DEV+++IR S + ETA+ +L+             
Sbjct: 377 RSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKSKLIS------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E N L  +I E  +IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEGEKNDLLQKIDELNEIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-----------MEDEDCIVREDMVV 540
           SS S+L  ++  E+     + DTPRRT +++   D            E       + ++ 
Sbjct: 471 SSASQLDKVVIAEMDYAVKQWDTPRRTILLDEQEDGSFTPVCTKNSKEVNSDSAMDAVIA 530

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED------------------------- 575
                     V  +   A++ G    +   ++  D                         
Sbjct: 531 ANQLTNAQADVAAAASAARKSGDTDATSAALQLSDEPCAVALSTSGLIARTSVETFNRWQ 590

Query: 576 ---------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--------IGSPQARGKAL 618
                       ++F  +T  +    +S G +    V  LP        +    + G   
Sbjct: 591 SHSSNIFDTPCLNVFTTTTRATYALITSAGRLVIAHVADLPHLNQGDENVSESLSNGVKA 650

Query: 619 INILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             +L+  Q      GE++   +   E +S      +   TK+G V+R        ++   
Sbjct: 651 SELLTSTQSTDPIRGEKVVAAIALSESDSKTP---LAIGTKNGVVKRWNFESPTTMDSWS 707

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I   L   D +++      E+ ++  +     + F    +R   GR+S G+ GI L + 
Sbjct: 708 IID--LKDNDSVINAALANDEDRLVFISSDSSLLTFDAKQVRA-QGRSSAGMAGIRLNEE 764

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
             V + A+V   D +++       +   +  L S     + +L  DS             
Sbjct: 765 CTVSAFAVVAKNDVEWN-------YEEGENGLFSASGSVVFTLAGDSDA----------- 806

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   L  +E G  K T    +    R   G+R+    K         V     N  
Sbjct: 807 --------LAGTENGAAKITPLEMYPTKGRGTGGVRSQRFLKGQNTILAAYV----GNYP 854

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +   + +G  + +P  ++R   R   G  + S
Sbjct: 855 LYATTQRGANVELPKPDMR---RDASGTELVS 883


>gi|81300503|ref|YP_400711.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
 gi|81169384|gb|ABB57724.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
          Length = 858

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 289/947 (30%), Positives = 448/947 (47%), Gaps = 151/947 (15%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I  +       I   ++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTDSIQFNG---ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + K AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 58  HELGLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   +H   L+++G++TVDF  N+D S QEP VL A+ P +L+NG 
Sbjct: 118 DNDPPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VD  +A+ID P +    L+  + GPDFPTG  ++G  GI +
Sbjct: 178 SGIAVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           AY  GRGSI +RG++ IE+         R  I+VTE+PYQV+KA  +EK+A+LV + ++ 
Sbjct: 238 AYLEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQ 297

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IAD+RDESDR+G RVVIEL+R A AD +L QLY+ T+LQS F   ++A+   +P++ +L
Sbjct: 298 GIADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++FRE  + RR  + L +   R  +L GL  ++++LD ++ I+R SP+  TAR
Sbjct: 358 KQLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTAR 417

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L                               L+E Q  A+L + + R+T L ++ ++
Sbjct: 418 ARLQVH--------------------------FDLNERQADAVLSMPMRRITSLEQEQLQ 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------------- 520
            E  +L  +      +L  R  LL  +K++L  +K    +PRRTR+              
Sbjct: 452 QEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPRRTRLPEIPPEAIAAPRQV 511

Query: 521 -------------------------------VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                                          V     +       +E   + +S    ++
Sbjct: 512 TAPVAPISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQ 571

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
               +      +   G         DF   L        +L  ++ G  Y+  +  +  G
Sbjct: 572 AASATELEPWLKAKSGAQERT----DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG 627

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                   + N+L    G + T I        +     ++  +  G V+R  L++  +I+
Sbjct: 628 -------PIANLLP--TGRQSTAIAATLLLPLASEERSLLLLSSQGRVKRLALTELAEIS 678

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGIS 728
             G   +KL   + I +   C  + ++LL +  G  +     +    A R S G  R + 
Sbjct: 679 NRGLQLLKLAEEEIIQAACLCAPQQEVLLGSSGG-RLLRLSLSELPLASRISRGQPRLLR 737

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +G+Q +                                                    
Sbjct: 738 LREGEQPLG--------------------------------------------------- 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +  +L VS  G  KR      R+      G  A   +  ++   L+A+ P  
Sbjct: 747 -CLSLPSGQDLLL-VSTLGLVKRLPLGLLRLCRAGDLGNNAFRFT--DKRDRLIALLPAP 802

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                I  SD+  L +  ++ I +     +G  +F+    E + S  
Sbjct: 803 SQGLAIFASDQ-RLWQRSISTIAVTGTDAEGQTLFNLRSTETLQSAT 848


>gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
 gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
          Length = 769

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 259/741 (34%), Positives = 391/741 (52%), Gaps = 35/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I   D       ++  ++  + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDLI--DDPNMGGDTSAEPLSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    ++ K ++ISG+VMG +HPHG+ AIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSAGGRFRKSSKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  +++ L ++ VDFR NYDG+  EPVVL A  PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+ +  + +I  PD   + L+  + GPDFPTG  ++  R  +  
Sbjct: 179 GIAVGMATNIPPHNIEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E     + QIVVTEIPYQV K+ ++EKIAEL++ KR+  +AD+
Sbjct: 239 AYRTGRGSFRLRAKWEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    +    DV++N L+R + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESADDIRMILEPRSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV++RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRREVLLRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+    +   +   D    IG D    LSEVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 AEDWSVKRGRAASEA--DYVSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRERD 473

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVE--GLLDMEDED 531
           +L  E     D+L S       I  ++  V+           RRT I E   + ++  E 
Sbjct: 474 ALMEERAGLEDLLESEDLQWVRISDQIREVRKTFGAKSEGGARRTLIEEAGEVEEVPLEA 533

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+V+ +   +   Q+        +  +D D     F   T   +L 
Sbjct: 534 MIEREPITVVCSRMGWVRAMKGHIDLTQK--------LKFKDGDEGRFAFHAETTDRLLV 585

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F + G  Y      LP G  +  G+ L  ++       I  I+             +V A
Sbjct: 586 FGTNGRFYTVSASNLPGG--RGMGEPLRLMIDFPNEADIVDILI------HKPGRKLVVA 637

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       D +   RSGK  + +      L  +     + + +  +  + + FP+ 
Sbjct: 638 SSAGDGFLVSEDDVLAQTRSGKQVLNVRGDATALVCKPVQG-DTVAVVGENRKVLVFPVE 696

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 697 DLPEMA--RGKGVRLQKYKDG 715


>gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
 gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
          Length = 752

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLLPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
 gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
          Length = 768

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 263/741 (35%), Positives = 395/741 (53%), Gaps = 36/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  D   +    S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSD--LLDDPNMQPEAVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L +D VDFR NYDG+ +EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPVVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E++D C+ +I +PD   D L++ I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNIAELIDACLHLIKSPDARDDTLLQYIPGPDFPTGGVIVEPPESIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++E+IAEL++ +++  +AD+
Sbjct: 239 AYLTGRGAFRLRCKWELEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    +V++  +YR + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESADDVRLVLEPRSKNVDPEVLMGMMYRNSELEVRFSLNMNVLIDGVTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR++V++RR+ + + K   R  VL GL IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDFRQQVLLRRSVHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDEDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +  W  +  + + +            G   L+EVQ  AIL +RL  L  L   ++R E +
Sbjct: 416 REDWGRTVPRAMSEADYVPPPPTAEAG---LTEVQAEAILNMRLRSLRRLEEMELRAERD 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDED 531
           +L  E     D+L   S     +  +L  VK           RRT+  E   + D+  E 
Sbjct: 473 TLMAERAGLEDLLDDVSLQWAAVADQLKEVKKTFGKTHPIGARRTQFAEAGSVEDVPLEA 532

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+++ +   +  +          +  +D D    +F   T   +L 
Sbjct: 533 MIDREPITVVCSQMGWIRAMTGHLDLS--------RELKFKDGDGPRFMFHAETTDRILV 584

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G  Y      LP G  +  G+ L  ++ L     I  ++             ++ A
Sbjct: 585 FGSNGRFYTLSASNLPGG--RGMGEPLRLMVDLPNEAGIVDLLIHK------PGRKLLVA 636

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + I   RSGK  + L      L     T  + +       + + F + 
Sbjct: 637 SDAGDGFIVPEEEVIAQTRSGKQVLNLKEPARALVCRPVTG-DHVACVGDNRKVLVFALD 695

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR      G
Sbjct: 696 ELPELG--RGKGVRLQKYKDG 714


>gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp.
           piscicida]
          Length = 754

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/758 (33%), Positives = 396/758 (52%), Gaps = 69/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDMTM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGV 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV    V +IDNP  DLDALME ++GPD+PT A +I  +  +K
Sbjct: 174 TGIAVGMATDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V H E        IV+T +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 234 KVYRTGRGSIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVED 288

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        + ++N L+  T L+  F VN+  L    +P+   L+
Sbjct: 289 LRDESDHENPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLV 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ +R   V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + 
Sbjct: 349 SIISEWLEYRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDP---KA 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L+ +Q  AILE++L +L  L    IR 
Sbjct: 406 ELMSR--------------------------FDLTAIQADAILEIKLRQLAKLEEIKIRG 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E +    +L S  RL  +IK+ELL+  +     RR+ +VE      + + D I
Sbjct: 440 EQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDDRRSPMVERAEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      S +  +  D         ++   +F  
Sbjct: 500 PSEPITVVLSEKGWI--------RHAKGHEVDPSTLSYKSGDSYLAHARGKSNQPAIFLG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  +  +M   EDE  W     + A+ 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPITGRLNLTPGSNMRQVM-MAEDEQLW-----LMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K SD +  N+SGK  + L    ++++ +     + + IL  T  G+ + FPI 
Sbjct: 604 AGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADA 746
            +          +  I  A+    ++ +S   VLH  A
Sbjct: 664 DLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGA 701



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  
Sbjct: 584 SNMRQVMMAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTLP-----ENAQVMAPQ 638

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + D  +DQI+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 639 EIRDIEHDQILAITNEGRMLLFPIKDLPQLGKG-KGNKIINI 679


>gi|229829025|ref|ZP_04455094.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
 gi|229792188|gb|EEP28302.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
          Length = 747

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 286/752 (38%), Positives = 418/752 (55%), Gaps = 36/752 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I        + I     +D MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M
Sbjct: 1   MTEKI-------REQIIETEYSDVMQKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+ ++K Y K ARI G+ MGKYHPHG+A+IYDAL  M+QD+   + L++G GNFGS+
Sbjct: 54  HELGIRYDKPYRKSARIVGDTMGKYHPHGDASIYDALVVMSQDFKKSVPLVDGHGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RL +      L DL KD VDF PN+D + +EP VL  R PN+LVNG 
Sbjct: 114 EGDGAAAMRYTEARLSQIAQEAYLADLDKDLVDFIPNFDETEKEPEVLPVRIPNLLVNGA 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP HNLGEV+DG +A + NP+I+   +ME I GPDFPTG ++  R  +  
Sbjct: 174 DGIAVGMATSIPQHNLGEVIDGVIAYMKNPEINTRQMMEYIPGPDFPTGGIVTNRDELLA 233

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDI 296
            Y+TG G I IRG + IEK  G RE IVV+EIPY +   N    L     LV  K+  DI
Sbjct: 234 IYSTGAGKIKIRGKASIEKIKGGREAIVVSEIPYTMIGANIGKFLNDTYALVESKKTSDI 293

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D+ + S + G R+VIELKRGA A  +LN LYR T L+  F VNM+A+   KPE   ++ 
Sbjct: 294 VDISNMSSKDGIRIVIELKRGADAQNVLNLLYRKTRLEDTFGVNMLAVAEGKPETMGIVP 353

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           I++  V F+ E+  R+   LL K +++  +  GL  AV  +D ++ I+R S + + AR  
Sbjct: 354 IIRHHVNFQYELATRKYTNLLKKEKEKKEIQEGLIKAVDVIDLIIEILRGSRSVKMARAC 413

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L+         K        S  +      ++ ++ Q  AIL++R+ RL GL  + +R +
Sbjct: 414 LVDGITEGIRFK--------SEQSEKDARLLHFTQRQADAILQMRMYRLIGLEIEQLRAD 465

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
                  I+E +DIL  R+ +  +I ++L  +K      RRT I      + +E  I  +
Sbjct: 466 YEKTMQNIQEDMDILEHRASMARVIIRDLKEIKKTFARKRRTLIDNVAEAVIEEKPIEEQ 525

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVV +   GYVK + LSVY   +           ++  +V      S    +  FSS G
Sbjct: 526 EMVVLMDRFGYVKAIDLSVYDRNQEAAD-------KENKYVIH---CSNLDRLAVFSSTG 575

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHG 655
            ++  KV  +P G  + +G  + N+   +   ERI     F E   +     V F T+ G
Sbjct: 576 QLHLIKVLDMPGGKFRDKGTPIDNLSKFDSARERIL----FAEALGAVKESKVFFGTRAG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++   ++F  ++R   IA KL   DE+++V T      +++ TK G  +R P+S I  
Sbjct: 632 YIKQVDGAEFD-VSRYSSIASKLGQGDELVAVGTIRGAETLVMETKSGYFLRIPVSDIPE 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              + +VGV GI L + D+V  M ++   +  
Sbjct: 691 K-KKAAVGVIGIKLGRADRVSQMYLLTDQEGG 721



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +KE  +   +  G+ K+    +F +S        ++  SK+ +   LVAV  +   + ++
Sbjct: 619 VKESKVFFGTRAGYIKQVDGAEFDVSR------YSSIASKLGQGDELVAVGTIRGAETLV 672

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +  G  +R+PV++I    +A  GV+     + +RV  +  + + E
Sbjct: 673 METKSGYFLRIPVSDIPEKKKAAVGVIGIKLGRADRVSQMYLLTDQE 719


>gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b]
 gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b]
          Length = 756

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 240/749 (32%), Positives = 390/749 (52%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    + +I+ P+  LD L++I+ GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I  R V   E       ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 IRQRAVWKKEDG-----EVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + VN+  +    +P    L+ I+  ++ +
Sbjct: 298 PTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLLEIISEWLVY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKAV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E   L  E 
Sbjct: 411 ----------------------FEISETQAEAILELKLRHLAKLEEMKIRGEQAELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+EL +        RR+ +   E    + + D +  E + + +
Sbjct: 449 DQLQAILASDRKMSNLLKKELQADSQTYGDDRRSPLREREEAKALSETDLVSAEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDPAGLSYKAGDNYLAAARGKSNQPVAFIDSTGRSYTLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  +  ++  P+++       ++ A+  G       
Sbjct: 561 PTSLP--SARGQGEPLTGKLTLPPGAVMEQVLMEPDEQK------LLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NRSGK  + L    ++++      +++ +L  T+ G+ + FP+  +   +    
Sbjct: 613 ADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAITQAGRMLMFPVGELPQMSKGKG 672

Query: 722 VGVRGISLAK----GDQVISMAIVLHADA 746
             +  I  A+     D+++ + I+    A
Sbjct: 673 NKIISIPSAEAAAGSDKLVWLLILPTGSA 701



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 34/273 (12%)

Query: 637 PEDESSWNNLYVVFATKHGNVR----------RNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E E   + L  + A+                +    D     R  + A  L   D ++S
Sbjct: 442 AELEKERDQLQAILASDRKMSNLLKKELQADSQTYGDDRRSPLREREEAKALSETD-LVS 500

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            E        ++ +++G         I         G   ++ A+G     +A +     
Sbjct: 501 AEPV-----TIVLSQMGWVRSAKGHDIDPAGLSYKAGDNYLAAARGKSNQPVAFIDSTGR 555

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            Y      +     Q   ++G          +  +           ++  EQ +L  S+ 
Sbjct: 556 SYTLDPTSLPSARGQGEPLTGKLTLPPGAVMEQVL-----------MEPDEQKLLMASDA 604

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRV 865
           G+G   +  D    NRSGK +         E   ++    VN ++D ++ ++  G ++  
Sbjct: 605 GYGFICTFADLVSRNRSGKALLTLP-----ENAKVMTPMAVNHEDDMLLAITQAGRMLMF 659

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           PV E+   S+  KG  I S    E     +++ 
Sbjct: 660 PVGELPQMSKG-KGNKIISIPSAEAAAGSDKLV 691


>gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
 gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
          Length = 758

 Score =  509 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 237/749 (31%), Positives = 388/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTPDGAERLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    + +ID+P   LD L++I++GPD+PT A +I  R+ I+  Y  GRGS
Sbjct: 183 DIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQDELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
                +L+S  ++  ++K+EL +  D     RR+ +   E    + + + +  E + + +
Sbjct: 449 AHLEGLLASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHELMPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      +G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SQSGWV--------RSAKGHDIDPAGLSYKAGDGYLGAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++   + +       ++ A+  G       
Sbjct: 561 PVTLP--SARGQGEPLTGKLTPPPGAVVEQVLMADDTQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK  + L +   +++       +D+LL  T  G+ + FP+  +   +    
Sbjct: 613 ADLVSRNRAGKALLTLPANANVMAPLAIHSNDDLLLAITAAGRMLMFPVGDLPQLSKGKG 672

Query: 722 VGVRGISLAK---GDQVISMAIVLHADAD 747
             +  I  A+   G+  ++  ++L  ++D
Sbjct: 673 NKIVSIPSAEAASGEDKLAWLLLLTPESD 701



 Score = 41.4 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       ++A   ++ ND 
Sbjct: 591 MADDTQKLLMASDAGYGFVCTFADLVSRNRAGKALLTLPAN-----ANVMAPLAIHSNDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L ++  G ++  PV ++   S+           K  ++VS+     +   D
Sbjct: 646 LLLAITAAGRMLMFPVGDLPQLSK----------GKGNKIVSIPSAEAASGED 688


>gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
 gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
          Length = 752

 Score =  509 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPIRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P   + +LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEP---KPKLMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            ++E Q  AILEL+L  L  L    IR E N L  E  +   IL
Sbjct: 407 ---------------FGITETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQSIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPLQST 697



 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103]
 gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103]
          Length = 771

 Score =  509 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/748 (32%), Positives = 389/748 (52%), Gaps = 61/748 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 17  ELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATA 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 77  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 136

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 137 RYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 196

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    +A+ID+P   LDAL+EI++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 197 DIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGS 256

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +  R V   E       ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 257 VRQRAVWKKEDG-----EVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHEN 311

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + +N+  +    +P    L+ IL  ++ F
Sbjct: 312 PTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLVF 371

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 372 RRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 425 ----------------------FDISETQAEAILELKLRHLAKLEEMKIRGEQSELEKER 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+EL +  +     RR+ +   E    + + + +  E + + +
Sbjct: 463 DQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPSEPVTIVL 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y   
Sbjct: 523 SQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLD 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++  PE++       ++ A+  G       
Sbjct: 575 PTSLP--SARGQGEPLTGKLTPPPGAVMEQVLMEPEEQR------LLMASDAGYGFICTF 626

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D I  NR+GK  + L     +++      +++ +L  T+ G+ + FP+  +   +    
Sbjct: 627 NDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSKGKG 686

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADA 746
             +  I     A G   ++  ++L   +
Sbjct: 687 NKIISIPSADAASGADKLAWLMILPPGS 714



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 20/266 (7%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK-LDSRDE---ILSVETCTQ 692
            E E   + L  + A++       K       N  G      L  R+E   +   E    
Sbjct: 456 SELEKERDQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPS 515

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E   ++ +++G         I         G   ++ A+G     +A +      Y    
Sbjct: 516 EPVTIVLSQMGWVRSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDP 575

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +     Q   ++G          +  +           ++ +EQ +L  S+ G+G   
Sbjct: 576 TSLPSARGQGEPLTGKLTPPPGAVMEQVL-----------MEPEEQRLLMASDAGYGFIC 624

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  D    NR+GK +     +        V     +++D ++ ++  G ++  PV E+  
Sbjct: 625 TFNDLISRNRAGKALLTLPENARVMTPMAVH----HEDDMLLAITQAGRMLMFPVGELPQ 680

Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898
            S+  KG  I S    +     +++ 
Sbjct: 681 MSKG-KGNKIISIPSADAASGADKLA 705


>gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895]
          Length = 752

 Score =  509 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAEVLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   L+ +++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            ++E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGITETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  D     RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 452 ASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   AQ        G+  +  D         ++  V+F  + G  Y      LP  
Sbjct: 512 SAKGHDIDAQ--------GLNYKSGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++         +   ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVEHMLM------EGDEQKLLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDETDMLLAITAAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+GD  ++   VL   + 
Sbjct: 676 SAEAARGDDTLAQLYVLPPQST 697



 Score = 45.3 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  EQ +L  S+ G+G   +  D    NR+GK +    + +   +   V +   ++ D 
Sbjct: 587 MEGDEQKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIE--DETDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 643 LLAITAAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
 gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
          Length = 768

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 258/742 (34%), Positives = 392/742 (52%), Gaps = 38/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D+  +    +  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRI++ M
Sbjct: 1   MNDLLDDPDQAPQA--VAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLGSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG+  EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLEGLAENAVDFRDNYDGTLTEPVVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L+  + GPDFPTG +I+  R  I  
Sbjct: 179 GIAVGMATNIPPHNIPELVDACLHLIKVPDARDDTLLNYVPGPDFPTGGIIVEPRENIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRCRYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    +    +V++  LYR T L+  FS+NM V ++G  P+  ++  +L
Sbjct: 299 RDESADDIRVILEPRSKNVDPEVLMGMLYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR EV+ RR+ + + K   R  VL GL +A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDFRREVLQRRSVHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDEDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG-TMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +  W    ++ +    D++ Y   + G    L+EVQ  A+L +RL  L  L    +  E 
Sbjct: 416 REDWGRDFVRAM----DEADYVPPAPGAPDGLTEVQAEAVLNMRLRALRRLEEMALVKER 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDE 530
           ++L  E     D+L S       I  +L   K           RRT   E   + ++  E
Sbjct: 472 DALMEERAGLEDLLESEDLQWAAISDQLREAKKTFGKDYEGGARRTTFAEAGEVEEVPIE 531

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA          +  +D D  + +F   T   +L
Sbjct: 532 AMIEREPITVVCSQMGWI--------RAMTGHIDLGRELKFKDGDGPSFMFHAETTDRLL 583

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G  Y      LP G  +  G+ L  ++ L     I  I              ++ 
Sbjct: 584 VFASTGRFYTISAANLPGG--RGMGEPLRLMVDLPNEAEIIDIFIHK------PGGKMLL 635

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + +   R+GK  + +   D    V      + + +  +  + + FP+
Sbjct: 636 ASSAGDGFVVPEEELLAQTRTGKQVLNVR-GDTRARVCKPVSGDHVAVVGENRKVLVFPL 694

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +         GVR      G
Sbjct: 695 DELPEMG--RGKGVRLQKYKDG 714



 Score = 42.2 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      +L  S  G G      +     R+GK +          +   V+       D 
Sbjct: 626 IHKPGGKMLLASSAGDGFVVPEEELLAQTRTGKQVLNVRGDTRARVCKPVS------GDH 679

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + +V +   ++  P++E+    R  KGV +      
Sbjct: 680 VAVVGENRKVLVFPLDELPEMGRG-KGVRLQKYKDG 714


>gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
 gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
          Length = 752

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 381/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E +    E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSEREKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894]
          Length = 756

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 386/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    V++ID+P   LD L++I++GPD+PT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L+ IL  ++AF
Sbjct: 298 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGISETQAEAILELKLRHLAKLEEMKIRGEQSDLEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+E+ +  D     RR+ +   E    M + D +  E + + +
Sbjct: 449 DQIQGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +        +  +  D         ++  V+F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDAKALSYKAGDGWLSSVKGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ +   L+L  G  +  ++   E++       ++ A+  G       
Sbjct: 561 PVSLP--SARGQGEPITGKLTLPPGAVVEHMLMTGEEQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D I  NR+GK  + L     +L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 613 NDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     AKGD  ++   +L   + 
Sbjct: 673 NKIISIPSADAAKGDDKLAYLTILPPQST 701



 Score = 46.1 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 11/117 (9%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +EQ +L  S+ G+G   +  D    NR+GK +             L  +   +D+D 
Sbjct: 591 MTGEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITL----PENAHVLKPLEIEHDDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIV 903
           ++ ++  G ++  PV ++   S+  KG  I S         D+++  +  +     V
Sbjct: 647 LLAITAAGRMLMFPVADLPQLSKG-KGNKIISIPSADAAKGDDKLAYLTILPPQSTV 702


>gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
 gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
          Length = 773

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 246/750 (32%), Positives = 378/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  + K VK AR+ 
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +  + LM +I GPDFP G  I+     I +AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K  +                      +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDES ++    ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L+ 
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  + RR ++ L K  DR H+L G  I   NLDEV+RIIR S  P+ A   
Sbjct: 380 ILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LMSAFGLTERQAEDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L SL  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LESLRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D+       ++ A+ +G 
Sbjct: 582 RVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     +  +        +   +  G+ + F I  ++ 
Sbjct: 634 GFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKA 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVTLMALDDKETLVQALAIDPAG 722


>gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
 gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
          Length = 768

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 385/760 (50%), Gaps = 72/760 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   V++ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D    
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL + A  LL +LG+ T D+ PN+DG+  EP +L AR P+VL+NG  GIAV
Sbjct: 121 FAAMRYTESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+ EV   CV ++  PD  ++ L E I+GPD+PT A +I  R  +   Y T
Sbjct: 181 GMATDIPPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYET 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R     E        +V+T++P+QV+   +LE+IA+ ++ K++  +ADLRDES
Sbjct: 241 GRGSLRMRARWVNEGGD-----LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDES 295

Query: 304 DRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
           D +     V++       A+ ++  L+  T L+  + VN+  + N  +P    L+ +L  
Sbjct: 296 DHENPTRLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLTE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ FR   V+RR +Y L+K   R H+L GL IA  NLDEV+ IIR+   P   + ELM R
Sbjct: 356 WLTFRRATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKP---KAELMVR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS  Q  AILEL+L  L  L    IR E + L
Sbjct: 413 --------------------------FSLSADQAEAILELKLRHLAKLEEMKIRGEQDEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
            IE      IL S  +L  +IK EL    +     RR+ IVE        + D +  + +
Sbjct: 447 AIERDHLQSILGSEKKLRQLIKTELQQDAETYGDDRRSPIVERGESRAFSNIDLVSNDPV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G+V        RA +       G+  +  D  +       +  V+F  S G  
Sbjct: 507 TVVLSEKGWV--------RAAKGHDIDPLGLSYKAGDKFSLQAHGRNNQQVIFLDSTGRA 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      LP  S + +G+ L   ++   G +   ++         +   VV  T  G   
Sbjct: 559 YALMAHSLP--SARGQGEPLSGHINPPPGAQFCGLLM------GDSQRKVVLVTDGGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-------QENDILLTTKLGQCVRFPIS 711
              L D +  NR+GK  + +     +++            +   +   +  G+ + FP++
Sbjct: 611 ATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPESRETLYLAAVSNEGRMLVFPLT 670

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHAD 745
            +         G + IS+      ++ + V+++A+  H+D
Sbjct: 671 ELPELV--KGKGNKLISIPSARVQSRDEFVVAVAVFAHSD 708



 Score = 44.5 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   ++ ++ V++ G+G  TS  D    NR+GK + +           +V V      + 
Sbjct: 593 MGDSQRKVVLVTDGGYGFATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPESRET 652

Query: 853 IIL--VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIVD 904
           + L  VS++G ++  P+ E+    +  KG  + S       ++DE VV+V     S+ ++
Sbjct: 653 LYLAAVSNEGRMLVFPLTELPELVKG-KGNKLISIPSARVQSRDEFVVAVAVFAHSDQLE 711


>gi|323484277|ref|ZP_08089645.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
 gi|323402429|gb|EGA94759.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
          Length = 746

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 266/763 (34%), Positives = 415/763 (54%), Gaps = 33/763 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAEEVYLKDLDKTVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A IDNP+     L++I+ GPDFPTG +I  ++ + N Y TG G I +R  
Sbjct: 183 NLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIANKSDLLNIYETGSGRIKLRAK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E      D+++++++EIPY +        L  IA+LV  K++ D+ D+ ++S+++G 
Sbjct: 243 LEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + I N LY+ T L+  F VNM+A+ G +PE  TL GILK ++ F+ E 
Sbjct: 303 RIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIAGGRPETLTLKGILKNYLDFQYEN 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K  ++  +  GL  A   +D ++ I+R S N + A+  LM+   + S+I 
Sbjct: 363 NTRKYNVLLEKELEKKEIREGLIKACDVIDLIIAILRGSKNLKDAKACLME--GDISNIH 420

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 D+ +  +        +E Q  AILE+RL +L GL    +  E      +IKE  
Sbjct: 421 FKTPGFDEDARKL------RFTEKQASAILEMRLYKLIGLEILALEKEYKETLRKIKEYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            ILSS+  +  +IK++L  +K E  TPRRT I +G   + DE  +   ++V  +   GY 
Sbjct: 475 KILSSKLTMDDVIKKDLEEIKAEFATPRRTLIEDGKEAVYDETAVEIREVVFVMDKFGYG 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V  + Y   +   +G +            +        +  F+  G +++ K   +P 
Sbjct: 535 KLVDRATYDRNQETIEGENP----------HVIPCLNTDKICLFTDTGLLHQVKASDIPF 584

Query: 609 GSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+   +   ER   I+    + S+     ++FATK   V+     +F  
Sbjct: 585 GKMRDKGTPVDNLCKFDGTKERPIFII----NASALVGRRLLFATKGAMVKLVPGEEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            NR    A KL   D ++S++      + +L T  G  +RF +  I     +NS GVRGI
Sbjct: 641 NNR-MVAATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDLEEISTL-KKNSKGVRGI 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            L +G+++     V     D ++ + Y +      RL  G  +
Sbjct: 699 KLGRGEEL---EQVYLLGTDSEQTVMYKEKQVHLNRLKIGKRD 738



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            + +L  ++    K     +F  +NR          +K+ +   +V++   +   + +L 
Sbjct: 618 GRRLLFATKGAMVKLVPGEEFETNNR------MVAATKLQDGDMVVSIQLTDGRTEAVLQ 671

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +  G  +R  + EI    + +KGV      + E +
Sbjct: 672 TTNGVFLRFDLEEISTLKKNSKGVRGIKLGRGEEL 706


>gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
 gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
          Length = 773

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 246/767 (32%), Positives = 376/767 (49%), Gaps = 70/767 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++ +    E       +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRI F M 
Sbjct: 3   DDNTLDLFNEPPADGDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFAMN 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS D
Sbjct: 63  EMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL   A  LL ++ + TVDF PNYDGSF EP VL AR P VL+NG  G
Sbjct: 123 GDGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNA 240
           IAVG+AT IP+HNL EV    VA+I +P +    LM+ + GPDFP G  I+     I  A
Sbjct: 183 IAVGLATEIPSHNLREVASAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAA 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD-- 298
           Y TGRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E    K  +      
Sbjct: 243 YETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKTLT 302

Query: 299 ----------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVN 340
                           +RDES +     ++   + +  D    +N L  +TSL+S   +N
Sbjct: 303 PEQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLN 362

Query: 341 MVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           MV + G  +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DE
Sbjct: 363 MVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDE 422

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           V+RIIR S  P+ A                                   L++ Q   ILE
Sbjct: 423 VIRIIRESDEPKVA-----------------------------LMAAFGLTDRQAEDILE 453

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           +RL +L  L +  I  EL  L  E  +  ++L S   +   + +E+ +   +    RRT 
Sbjct: 454 IRLRQLARLEKIKIEKELAELREEKAKLEELLGSEPAMKRQLIKEIEADAKQYGDERRTL 513

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I +      +   +      V VS  G+V        RA +  G   +G   +  D +  
Sbjct: 514 IQQEKRATFEARVVDEPVT-VVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYA 564

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T  +++ + S G VY   V +LP G  +  G  + +++ L  G  +        D
Sbjct: 565 AFQCRTPDTLIAWGSNGRVYSVAVAQLPGG--RGDGVPVTSLIELESGSHLMHYYAASAD 622

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILL 698
           ++      ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +  
Sbjct: 623 QA------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAAQVAC 676

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 677 LSSGGRLLVFGLDEMKTLSG-GGRGVTLMALDDKETLVQALAINKAG 722



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 6/176 (3%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G +   GD + +       D           +  A  +L  G  + +          G+
Sbjct: 552 AGFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGS 611

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L  S  GFG      D     ++GK     D         L  +
Sbjct: 612 HLMHYYAA--SADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGA----APLAPM 665

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             + D  Q+  +S  G L+   ++E++  S   +GV + +    E +V    I ++
Sbjct: 666 PMLPDAAQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMALDDKETLVQALAINKA 721


>gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 644

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/697 (32%), Positives = 360/697 (51%), Gaps = 61/697 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT A +I  R  ++
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 KVYETGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L++ + VN+  +    KP+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P+    
Sbjct: 352 QLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LSEVQ   IL+ RL +L  L    IR 
Sbjct: 410 -LMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E   L  E K    +L S ++L  ++++EL+   +     RR+ IV       + + + +
Sbjct: 443 EQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      +G+  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   L+   G     ++  P+D     +   V A+ 
Sbjct: 555 STGRSYSLPAHSLP--SARGQGEPLSGRLTPPPGASFECVL-LPDD-----DALFVIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
            G     K  D    N++GK  + L +   +++    
Sbjct: 607 AGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPV 643


>gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
 gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
          Length = 775

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 257/747 (34%), Positives = 387/747 (51%), Gaps = 43/747 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D +         +   + + YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 3   MSDVTTPADPDSRNSSEP--LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 61  RELRLNSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG+  EP VL A++PN+L NG  
Sbjct: 121 DGDNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L++ + GPDFPTG +I+     I N
Sbjct: 181 GIAVGMATNIPPHNISELVDACIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIAN 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R     E       QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+
Sbjct: 241 AYRTGKGGFRLRCRWETEDLGRGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDV 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    +    +V++  LYR + L+  FS+NM V ++G  P+  ++  +L
Sbjct: 301 RDESADDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+ Y + K   R  VL G  +A  NLD V+ IIR+  +P++A   LM
Sbjct: 361 RAFLDHRREVLQRRSTYRMEKIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSA---LM 417

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNEL 477
              W    ++ +    D++SY   +      LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 418 AEDWGKDHVRAM----DEASYVPPAPSAENSLSEVQADAILNMRLRSLRRLEEIELLREQ 473

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----------RRTRIVEG--LL 525
            +L  E     D+L +       I  +L   K +              RRT   E   + 
Sbjct: 474 AALMEERSGLEDLLENEGTQWDTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIE 533

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           ++  E  I RE + V  S +G++        RA          +  +D D    +F   T
Sbjct: 534 EVPLEAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAET 585

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +L F S G  Y      LP G  +  G+ L  ++ L    +I  I+           
Sbjct: 586 TDRLLVFGSNGRFYTVSASTLPGG--RGMGEPLRLMVDLPNEVQIVDILIHKA------G 637

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++ A+  G+       D +   R GK  + +    + +     T  + + +  +  + 
Sbjct: 638 RKLLVASSAGDGFIVPEDDVLAQTRGGKQVLNVRGDAKAMICAPVTG-DAVAVVGENRKV 696

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKG 732
           + F +  +         GVR      G
Sbjct: 697 LVFGLDELPEMG--RGKGVRLQKYKDG 721



 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + +L  S  G G      D     R GK +          I A V        D 
Sbjct: 633 IHKAGRKLLVASSAGDGFIVPEDDVLAQTRGGKQVLNVRGDAKAMICAPVT------GDA 686

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + +V +   ++   ++E+    R  KGV +      
Sbjct: 687 VAVVGENRKVLVFGLDELPEMGRG-KGVRLQKYKDG 721


>gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000]
 gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia
           solanacearum GMI1000]
          Length = 781

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 256/763 (33%), Positives = 376/763 (49%), Gaps = 77/763 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPREPA--EALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
            Y TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSL 298

Query: 292 ---------RIVDIAD-LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                     ++ + D +RDES +     ++   +  +       N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + + N+D
Sbjct: 359 NLVMIGTDGRPRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNID 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LSE Q   IL
Sbjct: 419 EVIRIIRESDEPKPA-----------------------------LMQAFGLSERQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKDLREEQAELDVLLKSETMMRRRIVKEIETDAKQFGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   +V E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +       S     V+ +T+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LA------SHAEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
                  +  G+ + FP++ ++  A     GV  + L K + +
Sbjct: 673 AYGAACLSANGRLLLFPLAEVKTLAS-GGRGVILMELEKNETL 714


>gi|87301556|ref|ZP_01084396.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
 gi|87283773|gb|EAQ75727.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
          Length = 820

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 284/783 (36%), Positives = 422/783 (53%), Gaps = 57/783 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   LD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLDEIGSDTVDFTSNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+  +A+I  P++  + L+E++ GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVEALIALIRKPELSDEKLLELVPGPDFPTGGEVLVGSGVRDTYLQGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+         R  +V+TE+PYQ++KA  +EK+A+ V + +I  IAD+RDESDR+
Sbjct: 243 GIAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLADQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIEL+R   A  +L  L R TSLQS F   ++AL   +P++ +L  +L  F+ +RE
Sbjct: 303 GMRVVIELRRDTEASKVLTDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLNHFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L +  DR  V+ GL  A+  L EV+  I+ + +  +AR  L         
Sbjct: 363 HTLIRRTSHALRRTEDRLEVVEGLIRALDALPEVIERIQAASDAASARASLQVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  A+L + L RLT L +D +R E   L  E + 
Sbjct: 417 --------------------FDLSERQADAVLAMPLRRLTSLEQDGLRKESVELMEERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--------MEDEDCIVREDM 538
              +L  R+ LL  +  EL ++K    TPRRTR+V G  D        +     + R+  
Sbjct: 457 LRHLLDDRAALLESMVAELKALKKRYSTPRRTRLVAGGDDLVAQRAAAVRPNTELQRQQA 516

Query: 539 VVTVSHLGYVKRVPLSVYR-----AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           +  +   G +      V R     A  R     +  +         +  V+   S+L FS
Sbjct: 517 LEALPGDGRLLIQADGVVRIVSPQALGRLHLDEAAPLGEHPSPARLILPVAEKPSLLAFS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V   + W      P +  K L   L    G+ I  ++P P          +   + 
Sbjct: 577 ASGRVAMLR-WEFAAQQPGSLEKFLPEGL---LGDPIVEVLPLP----QKPTGTLGLLSS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  +  F +++      +KL    ++  V  CT   D+++ +  G+ +R  ++  
Sbjct: 629 DGRFKRLPIEAFSELSGRAATVLKLKDGVQLRRVVPCTDGQDLVVASTTGRLLRLAVNDD 688

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLH-ADADYDERICYMKHM--SAQRRLISGDT 769
                G+ + G   + L  G+ V+  A V   +D     R   +K +     RR   GD 
Sbjct: 689 TLPLMGKAAQGPMLLRLLPGESVVGAACVDPGSDVLLVSRHSQLKRLEVEGLRRCERGDL 748

Query: 770 EEI 772
            +I
Sbjct: 749 GQI 751



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 804 SEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR     F  +S R      A  V K+ +   L  V P  D   +++ S  G L
Sbjct: 627 SSDGRFKRLPIEAFSELSGR------AATVLKLKDGVQLRRVVPCTDGQDLVVASTTGRL 680

Query: 863 IRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIR 898
           +R+ VN+  + +  +A +G ++      E VV    + 
Sbjct: 681 LRLAVNDDTLPLMGKAAQGPMLLRLLPGESVVGAACVD 718


>gi|260589533|ref|ZP_05855446.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|331082961|ref|ZP_08332081.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540101|gb|EEX20670.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|330399956|gb|EGG79614.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 748

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/728 (34%), Positives = 393/728 (53%), Gaps = 29/728 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 5   QENIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPYR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+AL  MAQ++   L L++G GNFGS++GD  AA RYTE
Sbjct: 65  KCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRYTE 124

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RLQK      L D+ K  VDF PN+D + +EP VL  + PN+LVNG  GIAVGMAT+IP
Sbjct: 125 ARLQKITQEVYLSDMDKQVVDFLPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATSIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D  +A + N +I +  LME I+GPDFPTG +++ +  + + Y TG G I IR
Sbjct: 185 PHNLGEVIDAVIAYMKNNEITVRELMEYIKGPDFPTGGIVVNKDDLLSIYETGTGKIKIR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +EK    +  +V+TEIPY +   N    L  +A L   K+  DI D+ ++S ++G 
Sbjct: 245 GKVEVEKGKNGKSLLVITEIPYTMIGANIGKFLNDVAALSESKKTTDIVDIANQSSKEGI 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+GA  + + N LY+ T L+  F VNM+A+   KPE  +L  I++  V F+ ++
Sbjct: 305 RIVIELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGKPETLSLKQIIEHHVDFQFDI 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K R+   V  GL  A   +D ++ I+R S + E  ++ L+         K
Sbjct: 365 ATRKYTSLLAKERENQEVQEGLIKACDVIDLIIEILRGSKSREQVKKCLIYGETEGIHFK 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                      +      ++ +E Q  AIL++RL +L GL  + +  E      +I    
Sbjct: 425 T--------KTSERQAKKLHFTERQATAILDMRLYKLIGLEIETLMAEHEETMKKIALYE 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++ S +  +I +EL  VK E    RRT +      + +E  I   ++V  +   GY 
Sbjct: 477 DILNNYSSMSKVIIKELQKVKKEYSRVRRTVVENAAEAVYEEKKIEEMEVVFLMDRFGYA 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + +  S Y   +      +            +        +  F+  G +Y  KV  LP 
Sbjct: 537 RTIDKSTYERNKETADSENKY----------VLTCMNTGKICLFTDAGRMYTIKVQELPF 586

Query: 609 GSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +G  + N+ + +   E+I  +    +      +  + F T  G V+  +  +F  
Sbjct: 587 GKFRDKGIPVDNVSNYDSAAEQIVFVGSMAD----IIHTTLCFVTAKGMVKLVEGKEFD- 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    + KL   D I+ V+       ++L TK G  ++F  + I  +  + ++GVRGI
Sbjct: 642 VAKRTISSTKLAEEDSIVMVQNAEAMEHLVLQTKEGYFLKFLKAEI-PYKKKTALGVRGI 700

Query: 728 SLAKGDQV 735
            + + D V
Sbjct: 701 KMNESDCV 708



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +  V+ KG  K     +F ++ R          +K+ E  ++V V      + ++L 
Sbjct: 620 HTTLCFVTAKGMVKLVEGKEFDVAKR------TISSTKLAEEDSIVMVQNAEAMEHLVLQ 673

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + +G  ++    EI    +   GV      + + V
Sbjct: 674 TKEGYFLKFLKAEIPYKKKTALGVRGIKMNESDCV 708


>gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616]
          Length = 773

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/750 (32%), Positives = 378/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  + K VK AR+ 
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +  + LM +I GPDFP G  I+     I +AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K  +                      +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDES ++    ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L+ 
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  + RR ++ L K  DR H+L G  I   NLDEV+RIIR S  P+ A   
Sbjct: 380 ILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L++ Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L SL  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LESLRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D+       ++ A+ +G 
Sbjct: 582 RVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     +  +        +   +  G+ + F I  ++ 
Sbjct: 634 GFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVTLMALDDKETLVQALAIDPAG 722


>gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
 gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
          Length = 757

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/748 (31%), Positives = 389/748 (52%), Gaps = 61/748 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TV+++PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    +A+ID P   L+ L++I++GPD+PT A +I  R  I+  Y TGRGS
Sbjct: 183 DIPPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I  R V   E+      ++V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 IRQRAVWKKEEG-----EVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + VN+  +    +P    L  IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  +ILEL+L  L  L    IR E   L  E 
Sbjct: 411 ----------------------FGISETQAESILELKLRHLAKLEEMKIRGEQADLEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +    L+S  ++  ++K+EL +        RR+ +   E    + + + +  E + + +
Sbjct: 449 DQLQATLASERKMNTLLKKELQADSASYGDERRSPLCEREEAKALSETELVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++  P+D+       ++ A+  G       
Sbjct: 561 PTSLP--SARGQGEPLTGKLTPPPGAVVEQVLMEPDDQR------LLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           SD I  NR+GK  + L     +++      +++ +L  T+ G+ + FP+  +   +    
Sbjct: 613 SDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSKGKG 672

Query: 722 VGVRGISLAK---GDQVISMAIVLHADA 746
             +  I  A+   G   ++  ++L   +
Sbjct: 673 NKIISIPSAEAAAGQDKLAWLMILPPGS 700



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 87/266 (32%), Gaps = 20/266 (7%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDE---ILSVETCTQ 692
            + E   + L    A++       K          G +    L  R+E   +   E    
Sbjct: 442 ADLEKERDQLQATLASERKMNTLLKKELQADSASYGDERRSPLCEREEAKALSETELVPS 501

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E   ++ +++G         I         G   ++ A+G     +A +      Y    
Sbjct: 502 EPVTIVLSQMGWVRSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDP 561

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +     Q   ++G          +  +           ++  +Q +L  S+ G+G   
Sbjct: 562 TSLPSARGQGEPLTGKLTPPPGAVVEQVL-----------MEPDDQRLLMASDAGYGFIC 610

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  D    NR+GK +     +        V     +++D ++ ++  G ++  PV E+  
Sbjct: 611 TFSDLISRNRAGKALLTLPDNARVMTPMAVH----HEDDMLLAITQAGRMLMFPVGELPQ 666

Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898
            S+  KG  I S    E     +++ 
Sbjct: 667 MSKG-KGNKIISIPSAEAAAGQDKLA 691


>gi|300783222|ref|YP_003763513.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299792736|gb|ADJ43111.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 828

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 275/829 (33%), Positives = 400/829 (48%), Gaps = 60/829 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  E+++SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G      YVK +
Sbjct: 23  VFENPLKTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILYSMNENGYRPTHAYVKSS 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA RYTE R+
Sbjct: 83  RVVGDVMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEARM 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L+ +LG+DTVDFRPNYDGS +EP VL A +PN+LVNG  GIAVGMATN+  HNL
Sbjct: 142 SPEAMQLVGELGEDTVDFRPNYDGSLEEPSVLPAAFPNLLVNGTSGIAVGMATNMIPHNL 201

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+     +I +P   LD LME + GPD PTG  +LG   ++ AY TGRG + +R    
Sbjct: 202 GEVIAAARWLITHPSATLDKLMEFVPGPDLPTGGSLLGLDEVRRAYETGRGVVRMRANCE 261

Query: 256 IEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDRQG-YRVV 311
                G   R+ I VTE+PY V    ++EKI + V + KR+  IAD++D +DR+   R+V
Sbjct: 262 TGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLV 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE K G +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+  R +VV R
Sbjct: 322 IECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKELLEVFLRHRYDVVTR 381

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY   K  +R H++ GL IA+ N+D+V+R+IR S N + A+  LM R           
Sbjct: 382 RTKYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAQAAKDGLMTR----------- 430

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q   IL+  L RLT   R ++ +E   L  EI E   IL
Sbjct: 431 ---------------FKLSEIQATYILDTPLRRLTKYDRLELESEQERLREEIAELSKIL 475

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------GLLDMEDEDCIVREDMVVTVSH 544
              S L  ++  EL  +  +  T RRT +++                 +  +   V +S 
Sbjct: 476 DDESVLKKLVSAELAKIAKDFPTERRTALIDGDLKEVLAASKPSGPLEVADDPCQVILSA 535

Query: 545 LGYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            G V R       A   +RR G+ +        D V  L   +    +L  +S G  +K 
Sbjct: 536 TGLVARTAAESEEATETRRRNGRVK-------HDAVAALVHTTARGQILLVTSRGRAFKT 588

Query: 602 KVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP+   QA       G A   ++ L +GE +  I P  E  +      +   T+ G
Sbjct: 589 DVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGETVVGIAPLGEQAAGSPG--LALGTRAG 646

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIR 714
            V+    S    +       + L   DE++           +   +     +++  S +R
Sbjct: 647 VVKIC--SPEWPVRSDEFEVISLKDGDEVVGATWLTDGSETLAFVSSEASLLKYAASLVR 704

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               +   G+ G++L+    V+    V   D ++ E +       + +     +      
Sbjct: 705 PQGLKGG-GMAGMNLSGDASVVFFGAVRTDDDEHGEPMVITATGLSVKVTPFSEYPAKGR 763

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                  +  +  E    +          +  G        D R     
Sbjct: 764 ATGGVRAQRFLKGETALRVAWIGPRPAAAARNGDPVELPEIDVRRDGSG 812



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 95/271 (35%), Gaps = 28/271 (10%)

Query: 644 NNLYVVFATKHGNVRRN---KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R             R+G++       D + ++   T    ILL T
Sbjct: 526 DDPCQVILSATGLVARTAAESEEATETRRRNGRVK-----HDAVAALVHTTARGQILLVT 580

Query: 701 KLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADYDERI 752
             G+  +  +  + V   +        G+     + L KG+ V+ +A +    A      
Sbjct: 581 SRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGETVVGIAPLGEQAAGSPGLA 640

Query: 753 CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +       +    +  D  E+ SLK+   V G         L    + +  VS +  
Sbjct: 641 LGTRAGVVKICSPEWPVRSDEFEVISLKDGDEVVG------ATWLTDGSETLAFVSSEAS 694

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIR-VP 866
             + ++   R     G G+   ++S    +    AV   +D   + ++++  G  ++  P
Sbjct: 695 LLKYAASLVRPQGLKGGGMAGMNLSGDASVVFFGAVRTDDDEHGEPMVITATGLSVKVTP 754

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +E     RAT GV      K E  + V  I
Sbjct: 755 FSEYPAKGRATGGVRAQRFLKGETALRVAWI 785


>gi|33862278|ref|NP_893838.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640391|emb|CAE20180.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 829

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 288/875 (32%), Positives = 455/875 (52%), Gaps = 74/875 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S R  +++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   LD++G++TVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  PD+  D L+ +I GPDFPTG  IL  TGI   Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  +VVTE+PYQ++KA  +EK+A+LV   +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A+ + +L  L+R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RRT + L K + R  V+ GL  A+  L  V+ +I+ + +   AR  LM +      
Sbjct: 363 LTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQ------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLT L +  +R E   L  + ++
Sbjct: 417 --------------------LDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQ 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--------EDEDCIVREDM 538
              +L +R  +L ++ QEL  +K   + PRRTR+VEG  D+             + R+  
Sbjct: 457 LQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQA 516

Query: 539 VVTVSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
           +  +   G +     S  +  + +  G+       +  D       +  +     +L  +
Sbjct: 517 LSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLSDGPSPARLILPIEPAPRLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V     W      P +  + L   L     E +  I P P D+    NL +   + 
Sbjct: 577 NNGRV-ALVRWEFAGQQPGSLERFLPGGLEK---ETLINIFPLPVDQ----NLSLGLLSS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SA 712
            G  +R  + + ++++      +KL     + S   C   +D++L + +G+ +R  + + 
Sbjct: 629 DGRFKRLPIEEVMELSGRAATIVKLKDGVILKSAFICKANDDVILASNIGRVIRINVNND 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                G+ + G   + L   + V+  ++   + ++         K        I      
Sbjct: 689 SMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIRICQRG 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                  +  + +  ++R  ++    + +  VS +G   R  +         GK      
Sbjct: 749 DLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQGRHGRIEA---------GKLELTIP 799

Query: 832 VSKINEIGALVAVFPVNDNDQII----LVSDKGTL 862
           +         + +  + DN++I     L++   TL
Sbjct: 800 IKPS------LNIVELKDNEEIQKLVPLITTNNTL 828



 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 804 SEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR    +   +S R      A  + K+ +   L + F    ND +IL S+ G +
Sbjct: 627 SSDGRFKRLPIEEVMELSGR------AATIVKLKDGVILKSAFICKANDDVILASNIGRV 680

Query: 863 IRVPV--NEIRIASRATKGVVIFSTAKDERVVS 893
           IR+ V  + + +  +  +G +      +E VV 
Sbjct: 681 IRINVNNDSMPLMGKLAQGPMTMRLLPEEMVVG 713


>gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
 gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
          Length = 781

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 254/763 (33%), Positives = 375/763 (49%), Gaps = 77/763 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 299 -----------------LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++   +  +       N L  +TSL+S   +
Sbjct: 299 TPDQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++A+R E V RRT++ L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LSE Q   IL
Sbjct: 419 EVIRIIRESDEPKPA-----------------------------LMQAFGLSERQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKDLREEQADLDVLLKSETVMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   +V E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDVLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +++      V+ +T+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LAGHAEQN------VLISTRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              +   +  G+ + FP+S ++  A     GV  + L K + +
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETL 714



 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  +  G G      D     + GK     D        A V      D   +  
Sbjct: 623 AEQNVLISTRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVP----EDAYGVAC 678

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +S  G L+  P++E++  +   +GV++    K+E + 
Sbjct: 679 LSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLA 715


>gi|298346916|ref|YP_003719603.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|298236977|gb|ADI68109.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 844

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 299/901 (33%), Positives = 424/901 (47%), Gaps = 132/901 (14%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  +K +VK
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
             R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA RYTE 
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAEFPNLLVNGANGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY  GRG  + R  
Sbjct: 186 NVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYENGRGIFITRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
           + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR    R+V+
Sbjct: 246 ATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R EV  RR
Sbjct: 306 EVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRVEVTRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM              
Sbjct: 366 SEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q   ILELRL RLT   R ++  E + L   I E   IL+
Sbjct: 413 -------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILA 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L  +++ ++      L TPRRT ++E               ++  ++    V  VP
Sbjct: 460 STEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVLGAMT----VSDVP 515

Query: 553 LSVYRAQRRGGKG---------RSGVVMRDEDF---VTDLFIVSTHTSVLFFSSLGFVYK 600
           L V     R   G          +G V R E F   +    +  T  S    +S GFV +
Sbjct: 516 LEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGVVTSSGFVVR 575

Query: 601 EKVWRLPIGS----------------------------------PQARGKA-LINILSLN 625
             V  LP G                                       G   L     L 
Sbjct: 576 LDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLE 635

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            GE +  I+   EDE+      V   T  G V+R +       +R   I   L+  D+++
Sbjct: 636 DGETVVGILTLDEDET------VGMMTARGIVKRMRPDYPSTQDRFSII--NLEGTDQLI 687

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
               C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV    
Sbjct: 688 YAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVPDEL 746

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                       M+A                                             
Sbjct: 747 VAATTVATVSAIMNAMPGANQSSI------------------------------------ 770

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
               K T    + +  R  +G+R     K      +  V P    D I  +   G  +++
Sbjct: 771 ----KLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAFVGP----DPIHAIDAHGQPVKL 822

Query: 866 P 866
           P
Sbjct: 823 P 823



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++ +G  KR         +R         +  +     L+      D+ QI++
Sbjct: 648 EDETVGMMTARGIVKRMRPDYPSTQDR-------FSIINLEGTDQLIYAGACPDDAQIVM 700

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 701 ISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDE 745



 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 57/183 (31%), Gaps = 17/183 (9%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
               L  G+ V+ +  +   +         +          + D   I +L+        
Sbjct: 630 AAARLEDGETVVGILTLDEDETVGMMTARGIVKRMRPDYPSTQDRFSIINLEG------- 682

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI------ 838
             +         +  I+ +S      RT +   R   R+  G+    + +  ++      
Sbjct: 683 TDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIV 742

Query: 839 -GALVAVFPVNDNDQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              LVA   V     I+      ++ ++   P++   +  R  +GV +    K E  + +
Sbjct: 743 PDELVAATTVATVSAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYALDM 802

Query: 895 ERI 897
             +
Sbjct: 803 AFV 805


>gi|304389377|ref|ZP_07371341.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327366|gb|EFL94600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 844

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 300/901 (33%), Positives = 425/901 (47%), Gaps = 132/901 (14%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  +K +VK
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
             R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA RYTE 
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY TGRG  + R  
Sbjct: 186 NVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYETGRGIFITRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
           + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR    R+V+
Sbjct: 246 ATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R EV  RR
Sbjct: 306 EVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRVEVTRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM              
Sbjct: 366 SEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q   ILELRL RLT   R ++  E + L   I E   IL+
Sbjct: 413 -------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILA 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L  +++ ++      L TPRRT ++E               ++  ++    V  VP
Sbjct: 460 STEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVLGAMT----VSDVP 515

Query: 553 LSVYRAQRRGGKG---------RSGVVMRDEDF---VTDLFIVSTHTSVLFFSSLGFVYK 600
           L V     R   G          +G V R E F   +    +  T  S    +S GFV +
Sbjct: 516 LEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGVVTSSGFVVR 575

Query: 601 EKVWRLPIGS----------------------------------PQARGKA-LINILSLN 625
             V  LP G                                       G   L     L 
Sbjct: 576 LDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLE 635

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            GE +  I+   EDE+      V   T  G V+R +       +R   I   L+  D+++
Sbjct: 636 DGETVVGILTLDEDET------VGMMTARGIVKRMRPDYPSTQDRFSII--NLEGTDQLI 687

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
               C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV    
Sbjct: 688 YAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVPDEL 746

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                       M+A                                             
Sbjct: 747 VAATTVATVAAIMNAMPGANQSSI------------------------------------ 770

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
               K T    + +  R  +G+R     K      +  V P    D I  +   G  +++
Sbjct: 771 ----KLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAFVGP----DPIHAIDAHGKPVKL 822

Query: 866 P 866
           P
Sbjct: 823 P 823



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +++ +  ++ +G  KR         +R         +  +     L+      D+ QI++
Sbjct: 648 EDETVGMMTARGIVKRMRPDYPSTQDR-------FSIINLEGTDQLIYAGACPDDAQIVM 700

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 701 ISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDE 745



 Score = 45.3 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
               L  G+ V+ +  +   +         +          + D   I +L+        
Sbjct: 630 AAARLEDGETVVGILTLDEDETVGMMTARGIVKRMRPDYPSTQDRFSIINLEG------- 682

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +         +  I+ +S      RT +   R   R+  G+    + +  +   ++A 
Sbjct: 683 TDQLIYAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQ---VIAG 739

Query: 845 FPVNDN-------------DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             V D                 +  +++ ++   P++   +  R  +GV +    K E  
Sbjct: 740 AIVPDELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYA 799

Query: 892 VSVERI 897
           + +  +
Sbjct: 800 LDMAFV 805


>gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
          Length = 783

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 254/764 (33%), Positives = 380/764 (49%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
            Y TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 292 ---------RIVDIAD-LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                     ++ + D +RDES +     ++   +  +       N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L++ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLTDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   ++ E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKVIDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQ 692
           +    +++      V+ AT+ GN    K+ D +   + GK  + LD  D+    V     
Sbjct: 619 LAGHAEQN------VLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPVAVAED 672

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   +  G+ + FP+S ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLV 715



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  +  G G      D     + GK     D  + ++    VAV    D   +  
Sbjct: 623 AEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLD--EGDQPNKPVAV--AEDAYGVAC 678

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +S  G L+  P++E++  +   +GV++    K+E +V
Sbjct: 679 LSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLV 715


>gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
          Length = 767

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 264/741 (35%), Positives = 402/741 (54%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +P++L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  +AL+ +I GPDFPTG VI+  +  I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 GYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV++RR+++ + K   R  VL GL +A  NLD V+ IIR+   P+ A   LM
Sbjct: 359 RAFLDHRREVLIRRSEHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEPKRA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             +W     +       +  Y     G   L+EVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 AETWG----RKFKRATSEKDYVGPGAGPGELTEVQAEAILNMRLRSLRRLEEMELLAERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L  E  +  D++ S  R    I  +L  ++           RRT+  E   + ++  E 
Sbjct: 472 ALTAERADLADLVGSEPRQWERIGADLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G++        RA +      S V  +D D    +F   T   +L 
Sbjct: 532 MIEREPITVICSKMGWI--------RAMKGHQPLGSEVKFKDGDGPRFMFHAETTDRLLL 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y      LP G  +  G+ +  ++ L     I  ++ +   E       ++ A
Sbjct: 584 VGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAEIADLIIWRPGEK------LLLA 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + +   R+GK  + +       +V    + + + +  +  + + FP+S
Sbjct: 636 SSAGDGFVVPSEEVLAQTRAGKAVLSMKDG-VTTAVCRPIRGDHVAVVGQNRKLLVFPLS 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 695 ELPEMA--RGKGVRLQKYKDG 713


>gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
 gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
          Length = 758

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 403/752 (53%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL ++G+ TVD++PN+DG+ +EP +L +R P++L+NG  GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV +  V +++NP  DLD +M+ ++GPD+PT A I+   + IK  Y +GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E+       IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R     A+ ++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R  
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDP---KHELMTR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q  AILE++L +L  L    IR E + L  
Sbjct: 412 ------------------------FDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDELAK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E      +L S  RL  +IK+E+L+  ++    RR+ +VE      M + D I  E + V
Sbjct: 448 ERDYLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLIPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +      + +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSDKGWI--------RHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVFMGSNGRSYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G +IT ++   E+++       + ++  G     
Sbjct: 560 LESHTLP--SARSQGEPITGRLNITAGSQITHVVMGEEEQTW------LISSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  N++GK  + L    ++++ E  +  + ++IL  T  G+ + FPI  +     
Sbjct: 612 KGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEILAITNEGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  A+    ++ +S  + L   A 
Sbjct: 672 GKGNKIINIPAARSKSREEFLSHLLPLPQGAT 703



 Score = 45.7 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ +  G         +         G + ++ A+G        +      Y
Sbjct: 499 LIPSEAITVVLSDKGWIRHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVFMGSNGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S+     +  +EQ  L  S+ G+
Sbjct: 559 ALESHTLPSARSQGEPITGRLNITAG-----------SQITHVVMGEEEQTWLISSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    N++GK +     +        V+     ++D+I+ ++++G ++  P+ 
Sbjct: 608 GFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDL---ESDEILAITNEGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 665 DLPQLGKG-KGNKIINI 680


>gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114]
 gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114]
          Length = 758

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 403/752 (53%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL ++G+ TVD++PN+DG+ +EP +L +R P++L+NG  GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV +  V +++NP  DLD +M+ ++GPD+PT A I+   + IK  Y +GR
Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E+       IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R     A+ ++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R  
Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDP---KHELMTR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q  AILE++L +L  L    IR E + L  
Sbjct: 412 ------------------------FDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDELAK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E      +L S  RL  +IK+E+L+  ++    RR+ +VE      M + D I  E + V
Sbjct: 448 ERDYLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLIPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +      + +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSDKGWI--------RHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVFMGSNGRSYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G +IT ++   E+++       + ++  G     
Sbjct: 560 LESHTLP--SARSQGEPITGRLNITAGSQITHVVMGEEEQTW------LISSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  N++GK  + L    ++++ E  +  + ++IL  T  G+ + FPI  +     
Sbjct: 612 KGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEILAITNEGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  A+    ++ +S  + L   A 
Sbjct: 672 GKGNKIINIPAARSKSREEFLSHLLPLPQGAT 703



 Score = 45.7 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ +  G         +         G + ++ A+G        +      Y
Sbjct: 499 LIPSEAITVVLSDKGWIRHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVFMGSNGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S+     +  +EQ  L  S+ G+
Sbjct: 559 ALESHTLPSARSQGEPITGRLNITAG-----------SQITHVVMGEEEQTWLISSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    N++GK +     +        V+     ++D+I+ ++++G ++  P+ 
Sbjct: 608 GFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDL---ESDEILAITNEGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 665 DLPQLGKG-KGNKIINI 680


>gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
 gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
          Length = 752

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E +    E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSEREKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           R+GK  + L     ++         + +L  T+ G+ + FP+S +   +      +  I 
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIP 675

Query: 728 --SLAKGDQVISMAIVLHADAD 747
               A+G+  ++   VL   + 
Sbjct: 676 SAEAARGEDGLAQLYVLPPQST 697



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 641

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 678


>gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
 gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
          Length = 773

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 249/772 (32%), Positives = 384/772 (49%), Gaps = 77/772 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  E      +++ +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDSPEADA---LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LYAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDA 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I +AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIASAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLG 297

Query: 296 IAD------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQS 335
                                +RDES ++    ++   +  + D    +N L  +TSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLES 357

Query: 336 LFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            NLDEV+RIIR S  P+ A                                   L++ Q 
Sbjct: 418 LNLDEVIRIIRESDEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT I +      +   +      V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRTLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFSFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +    
Sbjct: 560 DSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYY 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQE 693
               D+       ++ A+ +G     K+ D +   ++GK  M +D     +  +      
Sbjct: 618 AASADQP------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 672 TQVACLSSGGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALAIDPAG 722


>gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
 gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
          Length = 745

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/794 (30%), Positives = 392/794 (49%), Gaps = 70/794 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
               S  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K
Sbjct: 3   DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE
Sbjct: 63  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ TV++ PN+DG+  EP +L AR PNVL+NG  GIAVGM+T+IP 
Sbjct: 123 SKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV + C+ ++ +P   LD LM+ I+GPDFPT A VI     I   YA G+GS+  R
Sbjct: 183 HNLREVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E        IVVT +PYQV+ A +LE+IA+ + +K++  ++DLRDESD +    +
Sbjct: 243 AVYEREDGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRL 297

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           +   R      + +++ L+  T L+  + VN+  +    +P+  +L  IL  ++ FR   
Sbjct: 298 VITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMVT 357

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K  +R H+L GL  A  N+DEV+ IIR    P+     LM+R        
Sbjct: 358 VRRRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPV---LMER-------- 406

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +S+ Q  AILEL+L  L  L    IR E + L  E +   
Sbjct: 407 ------------------FGISDRQAEAILELKLRHLAKLEEMKIRGEQDELNEEREYLE 448

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
             L S +++  ++ +EL    ++    RR+ +VE      +++ D +  + + V +S  G
Sbjct: 449 TTLGSMAKMKKLVAKELKDDAEKYGDDRRSPLVERDDAKALDETDLLSADPVTVVLSEKG 508

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +       G+  +  D         ++  V F  S G  Y      L
Sbjct: 509 WV--------RAAKGHEVDVEGLSYKAGDKYKASAKGKSNQPVCFIDSTGRTYSLPAHTL 560

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   +S   G      +   + ++       + +T  G     + +D +
Sbjct: 561 P--SARGQGEPLSGRVSPPSGASFMAAVMGKDKDA------YLMSTDAGYGFVVRYADLL 612

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVF---AGRNS 721
              ++GK  + +     +LS +    T ++ I L +  G+ + FP+S +       G   
Sbjct: 613 ANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSNEGRLLVFPVSELPEMVRGKGNKM 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           + + G  +A+  + +    V+  D            + A +R ++    ++     +   
Sbjct: 673 MSIPGARVAERVEFVQDVQVVGPDD--------ALTLYAGKRHLTLKAGDLEHYYGERGR 724

Query: 782 EGNISEERCQELKL 795
            G       Q +  
Sbjct: 725 RGAKLPRGFQNVDA 738


>gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
 gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
          Length = 758

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/796 (30%), Positives = 396/796 (49%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT A +I     I   Y TGRGS+  R
Sbjct: 190 HNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYETGRGSLKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSVEAG-----EIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VV+        D ++  L+  T L+  F VN+  L    +P    L  +L  ++ FR + 
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLTEWLEFRVDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + ELM R        
Sbjct: 365 VRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AILEL+L  L  L    I+ E + L  E ++  
Sbjct: 414 ------------------FNLTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  G
Sbjct: 456 QLLSSERRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQELTPSEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D      +  ++ + +F  S G  +      L
Sbjct: 516 WV--------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   EDE        + AT  G       +D +
Sbjct: 568 P--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQ-----CFLLATDAGYGFICTYNDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L    + L        +E  IL  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPPNAKSLPPRLIDRSREMSILAITNEGRMLLFSLEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ AD            + A +R ++    ++   + +   
Sbjct: 680 IGIPSERAKNREELMTHLQLVPADTPV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
 gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
          Length = 773

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/769 (32%), Positives = 382/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFASSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    V +I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P++A                                   LSE Q   I
Sbjct: 421 DEVIRIIRESDEPKSA-----------------------------LMSAFGLSERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +
Sbjct: 621 ADQQ------LLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 722


>gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631]
 gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631]
          Length = 738

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 303/818 (37%), Positives = 449/818 (54%), Gaps = 90/818 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    I +E++++YL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  +K +VKC
Sbjct: 3   EVLIRDIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G V+G YHPHG+A +Y+AL RMAQD+S+R  LI+GQGNFGS+DGD PAA RYTECR
Sbjct: 63  ARVVGHVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L+D+ K+TVDF+PN+D S QEPVVL A+ PN+L+NG  GIAVGM TNIP HN
Sbjct: 123 LTEIAEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV DG +A I NP+I ++ LM  I+GPDFPTG VI+GR GI  AY TG+G I++RG  
Sbjct: 183 IREVCDGIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+       I++ EIPY VNKA ++EKIA+L+++ +++    +RDESDR+G RVVIEL
Sbjct: 243 DVEEDK-----IIIREIPYMVNKAKLVEKIADLIKKDKLLAKT-VRDESDREGIRVVIEL 296

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K        L +LY +T L+  F+V M+AL   +P+   L  ++  +V  R EVV R+ +
Sbjct: 297 KE--DPYSALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKAE 354

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +R H++ GL  A+  LDEV+ +I+ S + + A+  LM+               
Sbjct: 355 YELKKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK--------------- 399

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + ++E Q  AIL+LRL  LT L  + +  E N L   I E   IL+  
Sbjct: 400 -----------LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRIDELKSILADP 448

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+  II +EL  VK +    RRT I++     ++    V E+  V V+  G +KR    
Sbjct: 449 KRVDEIIVEELREVKRKFGDNRRTEIID-----KEILKEVVEEFGVAVTLDGQIKRF--- 500

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                        G  +R    +  L    ++  +L FSS    Y      +P+      
Sbjct: 501 -----------EIGKALRSNPKI--LLRAMSNLDILLFSSD-KAYSIHARDIPLDF---- 542

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
              L   +S    E++ T +    D        VV  +K GN+++ +L +F    R+G I
Sbjct: 543 -TPLSKFISA---EKVETGVVAKGD--------VVILSKDGNIKKVRLEEFANAKRAGII 590

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A       E +      ++ D+++ TK G  VRF  S I  +  R++ GV+ I+L +GD+
Sbjct: 591 AG------ENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYG-RSAKGVKAITLREGDE 643

Query: 735 VISMAIVLHADADYDERICYMKHMSAQR-RLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +  M+I          R  Y K +     RL +     +  ++ + +V   +SEE     
Sbjct: 644 IAWMSIGKGDYVLILTRDGYAKKVPIDEFRLTNRGAMGVRGVRGEIAVAEIVSEEEY--- 700

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                     + +G   R +       +R  KG +  D
Sbjct: 701 -------YAYTSEGNAVRINVKRIPKGDRYKKGKKIVD 731



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 8/138 (5%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +  + I   K+    R   S   E   S K   ++     +E       K  ++L ++  
Sbjct: 602 EDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAITLREGDEIAWMSIGKGDYVLILTRD 661

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+ K+    +FR++NR   G+R          G +     V++ ++    + +G  +R+ 
Sbjct: 662 GYAKKVPIDEFRLTNRGAMGVRGVR-------GEIAVAEIVSE-EEYYAYTSEGNAVRIN 713

Query: 867 VNEIRIASRATKGVVIFS 884
           V  I    R  KG  I  
Sbjct: 714 VKRIPKGDRYKKGKKIVD 731



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +   IS E+ +   + +  ++ +S+ G  K+    +F  + R+G              
Sbjct: 543 TPLSKFISAEKVETGVVAKGDVVILSKDGNIKKVRLEEFANAKRAGII-----------A 591

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           G  +    + ++  +I+ +  G ++R   +EI    R+ KGV   +  + + + 
Sbjct: 592 GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAITLREGDEIA 645


>gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
 gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
          Length = 767

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 262/741 (35%), Positives = 399/741 (53%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D + E    S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTK--APQDPKIEPQEHSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELKLSPTSAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +P++L NG  
Sbjct: 119 DGDNPAASRYTEARLTAIAEALMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HNL E++DGC+A+I +PD+   AL+++I GPDFPTG VI+  R  I +
Sbjct: 179 GIAVGMATNIPPHNLHELIDGCLALIKHPDLPDAALVDLIPGPDFPTGGVIVEPRASILD 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRGS  +R    +E     + QIVVTEIPYQV K+ ++E++AEL++ K+   +AD+
Sbjct: 239 SYRTGRGSFRLRARWAVEDLGRGQWQIVVTEIPYQVQKSKLIERLAELIQTKKTPLLADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    R    D+++  L+R + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESTADVRLILEPRVRTVDPDMLMGTLFRNSDLELRFSLNMNVLIDGRTPKVCSLREVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  + EV+ RR+++ L K   R  +L G  I   NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHKREVLQRRSRHRLEKIDHRLEILEGFIITFLNLDRVIDIIRYDADPKRA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W     +       +  Y   + G   L+EVQ  AIL +RL  L  L   ++  E +
Sbjct: 416 AEDWGKKHRRA----TSEKDYVPPAPGEGELTEVQAEAILNMRLRSLRRLEELELIAERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDED 531
           +L +E     D+L+S +     I ++L  V+           RR+   E     ++  E 
Sbjct: 472 ALMVERAGLEDLLASDALQWKRIGKDLAEVQKTFGKASKGGARRSTFAEAGEAEEVPYEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G++        RA +      S    +D D    LF   T   ++ 
Sbjct: 532 MIEREPITVICSKMGWI--------RAMKGHVALDSEQKFKDGDEGRFLFHAETTDRIIL 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G VY      LP G  +  G+ +  ++ L     I  +M           L ++ A
Sbjct: 584 IGSNGRVYTLLGANLPGG--RGMGEPVRLMVDLPNDAEIIDLMIHR------PGLKLLIA 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + +   ++GK  + +    +          + + +     + + FP++
Sbjct: 636 STAGDGFVLPSDEVVAQTKAGKQVLVVREGVKTALCRPVKG-DAVAVVGDNRKMLVFPLA 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 695 DLPEMA--RGKGVRLQKYKDG 713


>gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061]
 gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 750

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 384/750 (51%), Gaps = 62/750 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   EITHDGVERQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSSSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  EV    +A++D P++ LD  ME I+GPD+PT A +I  +  I+  Y  GRGS
Sbjct: 183 DIPPHNAREVASALIAMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDIRKIYKNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E+ +     +++T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAIWSKEEGN-----VIITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++N L+  T L+  + VN+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPRTNRVDVEQVMNHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILSEWLVY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V  R  + L K   R H+L GL  A  N+DEV+ +IR    P+     LMQR    
Sbjct: 358 RRETVRNRLNHRLEKVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E Q  A+LEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGLTETQAEAVLELKLRHLAKLEEVKIRGEQDELSKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   IL S  +L  ++K+E+++  +     RR+ + E      M D D +  E + V +
Sbjct: 449 DKLQSILGSERKLNTLLKKEIIADAESYGDDRRSPLKERIEAKAMSDHDILPSEPITVVM 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  + G  Y   
Sbjct: 509 SEMGWV--------RSAKGHEIDPAGLNYKSGDSFRSAVRGKSNQPVVFIDTTGRSYSVD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+L  G  +  ++   E++        + A+  G       
Sbjct: 561 PLDLP--SARGQGEPLTGKLALPAGALVEHLLMAKEEQK------FLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720
           SD I  NR+GK  + L    +++       E    +L  TK G+ + FP+S +   +   
Sbjct: 613 SDLIAKNRAGKALITLPENAKVMEPLEINNEQDEMLLAITKAGRMLMFPVSDLPQLSKGK 672

Query: 721 SVGVRGISLA---KGDQVISMAIVLHADAD 747
              +  I  A    G+  +S  +VL   + 
Sbjct: 673 GNKIVSIPAAQAVSGEDTLSWLLVLSPQST 702



 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +EQ  L  S+ G+G   +  D    NR+GK +        N             ++ 
Sbjct: 591 MAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITL---PENAKVMEPLEINNEQDEM 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV+++   S+           K  ++VS+
Sbjct: 648 LLAITKAGRMLMFPVSDLPQLSK----------GKGNKIVSI 679


>gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 759

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 250/757 (33%), Positives = 392/757 (51%), Gaps = 69/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGV 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV +  V +IDNP  DLDALME ++GPD+PT A +I  +  +K
Sbjct: 174 TGIAVGMATDIPPHNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADLK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V H E        IV+T +P+Q + A +LE+IA  +R K++  + D
Sbjct: 234 KVYKSGRGSIKMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVED 288

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      + ++N L+  T L+  F  N+  L    +P+   L+
Sbjct: 289 LRDESDHENPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLV 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ +R   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P   + 
Sbjct: 349 QIIAEWLEYRRTTVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDP---KA 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS +Q  AILE++L +L  L    IR 
Sbjct: 406 ELMSR--------------------------FDLSAIQADAILEIKLRQLAKLEEIKIRG 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E ++   +L S  RL  +IK+E+LS  ++    RR+ +V  E    + + D I
Sbjct: 440 EQDELSKEREQLEKLLGSERRLNTLIKKEILSDAEKYGDERRSPLVEREEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      + +  +  D         ++   +F  
Sbjct: 500 PSEAITVVLSDKGWI--------RHAKGHEVDPTTLSYKSGDNYLAHARGKSNQPAIFLG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   EDE  W     + A+ 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPITGRLNLTPGTNMRQVL-MAEDEQLW-----LMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K +D +  N+SGK  + +     +L  +       ++IL  T  G+ + FPI 
Sbjct: 604 AGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILAITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            +          +  I        ++ +S   V+ AD
Sbjct: 664 DLPQLGKGKGNKIINIPSARAKAREEFLSYLAVIGAD 700



 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DN 850
           +   EQ  L  S+ G+G    S D    N+SGK +         E  A++   PV+  D+
Sbjct: 591 MAEDEQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVP-----ENAAVLPPQPVDNIDS 645

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D+I+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 646 DEILAITNEGRMLLFPIKDLPQLGKG-KGNKIINI 679


>gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60]
          Length = 758

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 385/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +        V++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + A  LL +LG+ TVD+  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  EV    VA++DNP   LD L+  I+GPDFPT A +I  R  I+  Y TGRGS
Sbjct: 183 DIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E++     +IV++ +P+Q + A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWRKEES-----EIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + +NM  +    +P    L  IL  ++++
Sbjct: 298 PTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V RR  Y L K   R H+L GL  A  N+DEV+ IIR    P+     L+ R    
Sbjct: 358 RRETVRRRLNYRLEKVLKRLHILEGLLCAFLNIDEVIHIIRSEDEPKPV---LVAR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q  AILEL+L  L  L    IR E ++L  E 
Sbjct: 411 ----------------------FGLSDTQAEAILELKLRHLARLEEVKIRGEQDALAQER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                +L+S  +L  +IK+E+++  +     RR+ + E      M + D +  E + + +
Sbjct: 449 DRLQTLLASERKLGTLIKKEIMADAETYGDARRSPLQERSEARAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEGGWV--------RSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +++       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEHVLMAADNQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L    ++L+      ++D+LL  T+ G+ + FP+  +   +    
Sbjct: 613 SDLVARNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  +   +VL     
Sbjct: 673 NKIVSIPAAQAAAGEDTLKWLLVLAPQTS 701



 Score = 46.1 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       L  +    D+D 
Sbjct: 591 MAADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAK----VLTPLEINGDDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ +++ G ++  PV+++   S+           K  ++VS+
Sbjct: 647 LLAITEAGRMLMFPVHDLPQLSK----------GKGNKIVSI 678


>gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 383/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +        V++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDNSERVALRAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + A  LL +LG+ TV++  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSRYAEVLLSELGQGTVEYTANFDGTLQEPKYLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  EV +  VA++DNPD  LD L+  I+GPDFPT A +I  R  I+  Y TGRGS
Sbjct: 183 DIPPHNAREVANALVALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+      +IV++ +P+Q + A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWRKEEG-----EIVISALPHQTSGAKVLEQIASQMRSKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L  IL  ++++
Sbjct: 298 PTRLVIVPRSNRVDFDQVMNHLFATTDLEKSYRINLNMIGLDRRPAVKDLREILTEWLSY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V RR  Y L K   R H+L GL IA  N+DEV+ +IR    P+     L+ R    
Sbjct: 358 RRETVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPKPV---LVAR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AILEL+L +L  L    IR E + L  E 
Sbjct: 411 ----------------------FGLSETQAEAILELKLRQLARLEEMKIRGEQDELAQER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
                +L+S  +L  +IK+E+++        RR+ +        M + D +  E + + +
Sbjct: 449 DRLQALLASERKLATLIKKEIIADAQNYGDARRSPLHQRAEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SESGWV--------RSAKGHDIDPSGLNYKAGDSFRAAARGKSNQPVVFIDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +++       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEHVLMAADNQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L    ++L+      ++D+LL  T+ G+ + FP+  +   +    
Sbjct: 613 SDLVARNRAGKAMLTLPENAKVLAPLAIHGDDDMLLAITQAGRMLMFPVHDLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  +   +VL     
Sbjct: 673 NKIVSIPAAQAAAGEDTLKWLLVLAPQTT 701



 Score = 44.9 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +         E   ++A   ++ +D 
Sbjct: 591 MAADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLP-----ENAKVLAPLAIHGDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L ++  G ++  PV+++   S+           K  ++VS+
Sbjct: 646 MLLAITQAGRMLMFPVHDLPQLSK----------GKGNKIVSI 678


>gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146]
 gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 760

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/749 (32%), Positives = 381/749 (50%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +        V++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + A  LL +LG+ TVD+  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  EV    VA++DNP   LD L+  I+GPDFPT A +I  R  I   Y TGRGS
Sbjct: 183 DIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIHKIYRTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E+      +IV++ +P+Q + A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVWRKEEG-----EIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++N L+  T L+  + +NM  +    +P    L  IL  ++++
Sbjct: 298 PTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V RR  Y L K   R H+L GL  A  N+DEV+ IIR    P+     L+ R    
Sbjct: 358 RRETVRRRLNYRLEKVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPKPV---LVAR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGLSDTQAEAILELKLRHLARLEEVKIRGEQDELAQER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                +L+S  +L  +IK+E+++  +     RR+ + E      M + D +  E + + +
Sbjct: 449 DRLQTLLASERKLGTLIKKEIMADAETYGDARRSPLQERSEARAMSEHDFVPNEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +      SG+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SEGGWV--------RSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 561 PLTLP--SARGQGEPLTGKLTPPPGATIEHVLMAADDQK------LLMASDAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L     +L+      ++D+LL  T+ G+ + FP+  +   +    
Sbjct: 613 SDLVARNRAGKAMLTLPENANVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  +   +VL     
Sbjct: 673 NKIVSIPAAQAAAGEDTLKWLLVLAPQTS 701



 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +             L  +    D+D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTL----PENANVLTPLEINGDDDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ +++ G ++  PV+++   S+           K  ++VS+
Sbjct: 647 LLAITEAGRMLMFPVHDLPQLSK----------GKGNKIVSI 678


>gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806]
 gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis]
          Length = 894

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 285/922 (30%), Positives = 480/922 (52%), Gaps = 78/922 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I+     S+L Y+++VI  RA+PDL+DGLKPVHRRIL+   +  +  + ++ K
Sbjct: 20  SNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSRFKK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + G VMG YHPHG+ +IYDAL R++QD+ +R  L+EGQGNFGS+DGD PAA RYTE 
Sbjct: 80  SATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRYTEI 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K     L  + ++ VDF  NYDGS QEP +L    P++L+NG  GIAVGMAT IP H
Sbjct: 140 KLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D  +A+IDNP++  +  +E I+GPDFPTG  I+G   +K  ++ G G I++R  
Sbjct: 200 NLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEIIGIESVKRYHSKGLGKIILRSK 259

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-----------IADLRDE 302
             I     ++ Q+++ EIP+ + KA +++KIA+L  E +              + ++RDE
Sbjct: 260 VEI---DANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQNIRDE 316

Query: 303 SD-RQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           S+ ++G R++IE K+G   +    +LN LY+Y  LQ  F+VN+  L   KP+   +  I+
Sbjct: 317 SNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGKPQLLGIGAII 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  + +++ R+TK+ L + + R H+L G    V NLDEV+RII    NPE   +E  
Sbjct: 377 RNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVIIQE-- 434

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+ VQ + I +L L +L  +    + NEL+
Sbjct: 435 ---------------------------KYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELD 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-DTPRRTRIVE-GLLDMEDEDCIVRE 536
               +  E   +L  +++    IK+EL+ +K+E  +  R+T I   G+  +   DCI +E
Sbjct: 468 QKRAKRDEYQALLDDKNKQYENIKKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIPKE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSL 595
           D+++ V+   Y+  +PL       R   G +     +  D   DL + S+H  +  F++ 
Sbjct: 528 DIILKVTQNNYIAAIPLDKIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNY 587

Query: 596 GFVYKEKVWRLPIG---SPQARGKALINILSLN-QGERITTIMPFP----EDESSWNNLY 647
             V+K K   + I        + + L N++ L  + E+   I+        +E  W ++ 
Sbjct: 588 ARVFKLKAHEIKISANKKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDID 647

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           ++FATK G +R+     F   +  +SGK AM+L   D++  V    ++++ILL +   + 
Sbjct: 648 LLFATKFGFIRKISFYKFFLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKV 707

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF  S +     R + GVRGI+L   D ++    I   +  D D+ +  ++    +   
Sbjct: 708 IRFKSSILEAKRTRKTFGVRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGKITS 767

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR-S 823
           +    +EI  +K          E+  ++ K  E   L             Y+ ++S +  
Sbjct: 768 LDSIKQEIVKVKEYDEETKQEVEKIIKQDKKDEDGEL------------EYEIKLSKKWG 815

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVI 882
           GKG+ A    +  +   L+A   + D+DQI+L+++K  + R   ++I +   R T+G  +
Sbjct: 816 GKGVLAYKNKENEK---LIACVLIKDSDQILLMTNKDHINRFQASQISVRKTRRTEGSQL 872

Query: 883 FSTAKDERVVSVERIRESEIVD 904
            S   +E++V   + +  + ++
Sbjct: 873 ISLKPNEKLVFFAKYQLPDDIE 894


>gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
 gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
          Length = 774

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 251/801 (31%), Positives = 382/801 (47%), Gaps = 70/801 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF  NYDG F EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLAEIDQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I    LME + GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKITHAELMEHVPGPDFPGGGQIISSEAEISAAYETGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DL 299
             +  + Q+V+TE+P       +LE+I E    K  +                      +
Sbjct: 261 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQGKQTMLGLLDAV 320

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +     ++   + +  D    +N L  +TSL+S  S+NMV + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNMVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 --------------------------LMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 472 LAELRDEKAKLEELLGSESAMKRLLIKEVEADAKQYGDERRTLIQQEKRATYEARVVDEP 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 532 VT-VVVSQKGWV--------RALKGHGLDTAGFTFKAGDSLYAAFQCRTPDTLIAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ +  G  +        D++      ++ A+ +G 
Sbjct: 583 RVYSVAVASLPGG--RGDGVPVTSLIEMESGSHLMHYYAASADQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    +  +        +   +  G+ + F I  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDATQVACLSSAGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            +G    GV  ++L   + ++    +  A           +    +    +         
Sbjct: 695 LSG-GGRGVTLMALDDKETLVQALAINAAGVMLIGARRGGRLDEEKLSGAALAAHVGKRA 753

Query: 776 KNDSSVEGNISEERCQELKLK 796
           +   + E  +  E  + + + 
Sbjct: 754 RKGRAPESKLKLEGMRPVPVA 774



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 6/168 (3%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G +   GD + +       D           +  A   L  G  + +          G+
Sbjct: 553 AGFTFKAGDSLYAAFQCRTPDTLIAWGSNGRVYSVAVASLPGGRGDGVPVTSLIEMESGS 612

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L  S  GFG      D     ++GK     D         L  +
Sbjct: 613 HLMHYYAA--SADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGA----APLAPM 666

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             + D  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 PMLPDATQVACLSSAGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 714


>gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957]
          Length = 783

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 381/764 (49%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
            Y TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 292 ---------RIVDIAD-LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                     ++ + D +RDES +     ++   +  +       N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L++ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLTDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIVKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   ++ E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKVIDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +++      V+ AT+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LAGHAEQN------VLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVAED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   +  G+ + FP+S ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLV 715



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  +  G G      D     + GK     D        A VA     D   +  
Sbjct: 623 AEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVA----EDAYGVAC 678

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +S  G L+  P++E++  +   +GV++    K+E +V
Sbjct: 679 LSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLV 715


>gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
 gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
          Length = 750

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/795 (30%), Positives = 387/795 (48%), Gaps = 67/795 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I +  I D  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++G+  + K+ K
Sbjct: 6   NDIETQPIKDFTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ ++ R  L++GQGN+GS D     AA RYTE
Sbjct: 66  AARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPDDPKSFAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+  +  +L +LG+ TVD++PN+DG+  EPVVL AR PNVL+NG  GIAVGMAT+IP 
Sbjct: 126 AKLRPYSRLMLHELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   C+A++DN  + ++ LM  I  PD+PT A V+  ++ I+  Y TG GSI +R
Sbjct: 186 HNLREVASACIALLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRMR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY-RV 310
               +E+       +V+T +P+Q   A ++E+IA+ +R+K++  + DLRDESD +   R 
Sbjct: 246 AKYTVEEGD-----VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIRF 300

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VI  +    + D +++ L+  T L+  + VNM  +    +P    L  IL  ++ FR + 
Sbjct: 301 VISPRSNRVNIDELMSHLFATTDLERNYRVNMNVIGLDGRPRVRNLREILVEWLKFRIQT 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL +A  NLDEV+RIIR    P+                 
Sbjct: 361 VTRRLQWRLDKVEKRLHILEGLLVAYLNLDEVIRIIRTEDEPKAV--------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AILE +L  L  L    IR E   L  E  +  
Sbjct: 406 --------------LMKAFKLSDEQAEAILETKLRHLAKLEEMKIRGEQEDLERERDDLQ 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
             L S+ RL  +IK+EL +   +    RR+ +V  E    M++   +  E   + +S  G
Sbjct: 452 KTLGSKQRLKTLIKKELKADAQDYGDDRRSPLVEREAAQQMDETALVPSEPTTIVISEKG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +        +  +  D      +  T+   +F  S G  Y       
Sbjct: 512 WV--------RAGKGHDLKPEELNYKAGDGYQHHALGRTNQQAVFIDSNGRTYTLVAHSF 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S ++ G+ L   L +  G     +M     +        + AT  G     KL D +
Sbjct: 564 P--SARSFGEPLTGKLKVKDGAEFVGVMAGKPQD------LYLLATDAGYGYVAKLEDMM 615

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSV-- 722
             N++GK  + +    ++L        +++ ++  T+ G C    +  +        V  
Sbjct: 616 TRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQGYCGVIKLDELPQLPKGKGVKM 675

Query: 723 -GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+        ++ ++  + L  D +     C  KH    + L S + ++ T  +    V
Sbjct: 676 LGIPPAKFKTREEFLA-YVTLVQDGEAFTVFCGKKH----KTLKSSEQDDYTIERGKRGV 730

Query: 782 EGNISEERCQELKLK 796
           +     +    L   
Sbjct: 731 KLPRGYQNVDALSAD 745


>gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54]
          Length = 773

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/761 (34%), Positives = 373/761 (49%), Gaps = 73/761 (9%)

Query: 1   MTEHIIS---SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+           +E G  ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL
Sbjct: 1   MTDSNQQGLFDAAPDEGGDAAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNF
Sbjct: 61  FAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS DGD  AA RYTE RL   A  LLD+L + TVDF PNYDGS QEP +L AR P +L+N
Sbjct: 121 GSRDGDNAAAMRYTEARLTPIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TG 236
           G  GIAVGMAT IP HNL EV   CVA+I  P +    L  +I GPDF  G  I+     
Sbjct: 181 GASGIAVGMATEIPPHNLREVAQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAAD 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I   YA GRGS+ +R     E+ +  + Q+VVTE+P   +   +LE+I E+   K     
Sbjct: 241 IAQIYAGGRGSLKVRARWQFEEMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGK 300

Query: 297 AD------------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSL 336
                               +RDES +     ++          D  +N L   TS++S 
Sbjct: 301 KSLTPEQTQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESS 360

Query: 337 FSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            SVN+V +    +P +  L  IL  ++AFR   V+RRT++ L+K  DR HVL G  +   
Sbjct: 361 ASVNLVCIGTDGRPRQKGLRDILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYL 420

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV++ IR S  P  A   LM+R                            LS+ Q  
Sbjct: 421 NVDEVIQTIRESDEPRAA---LMER--------------------------FNLSDRQAE 451

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            ILE+RL +L  L    I  EL     E     ++L + + L  ++ +E+ +   +    
Sbjct: 452 DILEVRLRQLARLEGFKIEQELEDKRKEQVALQELLDNPNTLKRLLIKEIEADAKQYGDD 511

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RRT I      + +   +  E + V VS  G++        RA++  G   S    +  D
Sbjct: 512 RRTLIETAERAVLETKVL-DEPVTVIVSQKGWL--------RARQGHGHDASQFGFKQGD 562

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            +   F   T  +++     G VY   V  LP  S +  G+ +  ++ L  G RI   + 
Sbjct: 563 DLYGAFECRTTDTLIAMGDNGRVYSVPVAGLP--SARGDGQPVTTMIDLESGTRIVHTIA 620

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEN 694
              D         + AT+ G     KLSD     R+GK  + L++ DE+L  V       
Sbjct: 621 AAADSRW------LLATRGGYGFAAKLSDMTSRQRAGKQFITLEAGDELLRPVPLFEGAT 674

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            + L ++ G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 QLALLSQKGKFLVFGLDEVKSLSG-GGRGTILMGLDGADKL 714


>gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
 gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
          Length = 783

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 253/764 (33%), Positives = 381/764 (49%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
            Y TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 292 ---------RIVDIAD-LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                     ++ + D +RDES +     ++   +  +       N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L++ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLTDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   ++ E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKVIDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +++      V+ AT+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LAGHAEQN------VLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVAED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   +  G+ + FP+S ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLV 715



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  +  G G      D     + GK     D        A VA     D   +  
Sbjct: 623 AEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVA----EDAYGVAC 678

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +S  G L+  P++E++  +   +GV++    K+E +V
Sbjct: 679 LSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLV 715


>gi|225028803|ref|ZP_03717995.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
 gi|224953887|gb|EEG35096.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
          Length = 754

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 247/775 (31%), Positives = 412/775 (53%), Gaps = 36/775 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     +D MQ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++G+  +K + K
Sbjct: 3   EQIIKTEFSDVMQKSYIDYAMSVICQRALPDVRDGLKPVQRRVLYAMQELGLSADKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+AL  M QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYEALVVMEQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +LQK    +   D+ K+ VDF+PN+D + +EPVVL  R PN+L+NG  GIAVGM T+IP 
Sbjct: 123 KLQKFTQDVYLADMDKNVVDFQPNFDETEKEPVVLPVRIPNLLINGAEGIAVGMTTSIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EVVDG  A +DNP+I  + LME ++GPDFPTG +++ +  +KN Y TG G + +RG
Sbjct: 183 HNLSEVVDGVKAYMDNPEITTEELMEYVKGPDFPTGGIVVNQKELKNIYETGSGKMKLRG 242

Query: 253 VSHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             H EK     +R+++V+TEIPY +   N +  +  +  L+  K   DI D+ +ES ++G
Sbjct: 243 KVHFEKAKKRSERDKLVITEIPYTMIGANISKFISDVVSLIENKTTSDIIDVSNESSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL+R A A+ + N LY+ T L+  F VNM+A+   KPE  +L  I+     F  E
Sbjct: 303 IRIVLELRRNADAERLENLLYKKTRLEDTFGVNMLAIANGKPELLSLKDIISHHTKFHYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ R+ + LL K  ++  +  GL  A   +D ++ I+R S + + A+  L+         
Sbjct: 363 VLTRKYETLLKKELEQKEIKEGLIKACDIIDLIIEILRGSKSLKDAKSCLINGDTENITF 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K           +      +  +E Q  AILE+RL RL GL    ++ E   +  +I + 
Sbjct: 423 KT--------QKSKKEASKLCFTEKQASAILEMRLYRLIGLEIMALQEEYAEILKKIDKY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL   + +  ++K++L  +K      R+T +      +     I  +++V  +   GY
Sbjct: 475 QDILEHPASMKRVMKKDLEKIKKNYGFDRKTELTNAKAAVVKALPIEEKEVVFVMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  + Y             V+++      +        +  F+  G +++ KV  +P
Sbjct: 535 SKILDKNTYERNEE-------TVLKE---YRHIVHCMNTDKICVFTDTGVMHQIKVQDIP 584

Query: 608 IGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  + +G  L NI + +   E+I  I+P    + +     ++F T    ++    ++FI
Sbjct: 585 SGRLRDKGTPLDNIGNYDSRNEQILLIVP----DRTLKEASLLFVTASSMIKLVDGAEFI 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN-----DILLTTKLGQCVRFPISAIRVFAGRNS 721
            + +    + KL   D + +V     +       I++ ++ G  +RFP+  +     + +
Sbjct: 641 -VQKKTVASTKLAEGDILAAVRLVAAKEGSINAQIIMQSEEGYFLRFPLEEV-TRKKKGA 698

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           +G+RG+ L + D +  + +    + D    I   K +   +  + G   +   ++
Sbjct: 699 IGIRGMKLQEDDHIKHVYLTGVENEDNPSIIYKEKELVFSKIRLMGRDGKGVKVR 753



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 69/201 (34%), Gaps = 10/201 (4%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +  C   + I + T  G   +  +  I     R+  G    ++   D      +++  D 
Sbjct: 557 IVHCMNTDKICVFTDTGVMHQIKVQDIPSGRLRD-KGTPLDNIGNYDSRNEQILLIVPDR 615

Query: 747 DYDERICYMKHMSAQRRLISGDT-----EEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
              E        S+  +L+ G       + + S K               +       I+
Sbjct: 616 TLKEASLLFVTASSMIKLVDGAEFIVQKKTVASTKLAEGDILAAVRLVAAKEGSINAQII 675

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             SE+G+  R    +     +   GIR   + + + I  +      N+++  I+  +K  
Sbjct: 676 MQSEEGYFLRFPLEEVTRKKKGAIGIRGMKLQEDDHIKHVYLTGVENEDNPSIIYKEKEL 735

Query: 862 LIRVPVNEIRIASRATKGVVI 882
           +     ++IR+  R  KGV +
Sbjct: 736 V----FSKIRLMGRDGKGVKV 752



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAVFPVND 849
           +  LKE  +L V+     K     +F +     K + +T +++ + + A+  VA    + 
Sbjct: 614 DRTLKEASLLFVTASSMIKLVDGAEFIVQK---KTVASTKLAEGDILAAVRLVAAKEGSI 670

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           N QII+ S++G  +R P+ E+    +   G+      +D+ +  V
Sbjct: 671 NAQIIMQSEEGYFLRFPLEEVTRKKKGAIGIRGMKLQEDDHIKHV 715


>gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1]
 gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1]
          Length = 765

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 250/818 (30%), Positives = 411/818 (50%), Gaps = 78/818 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR
Sbjct: 11  ETLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKATAKYKKSAR 70

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 71  TVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 130

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL ++ + TVD+ PN+DG+ QEP VL +R PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 131 SKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIAVGMATDIPPHNL 190

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            E+   C+ +++NP+ +LD L+  ++GPDFPTG  +I  ++ I   Y TG+G I  R   
Sbjct: 191 REIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYETGKGQIKARARF 250

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+      +IVV E+P+QV+ + +LE+IA  ++ K++  + DLRDESD +    ++ +
Sbjct: 251 TIEEG-----EIVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDESDHENPTRLVIV 305

Query: 315 KRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
            +    D+  ++  L+  T L+  + VNM  +     P+   L   L  ++ FR +VV R
Sbjct: 306 PKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKPLKNFLSEWLRFRIDVVRR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L+K  +R H+L GL IA  N+DEV+ IIR    P   + ELM R           
Sbjct: 366 RLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKP---KVELMAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q  +ILEL+L  L  L    I+ E + L  E K+   +L
Sbjct: 412 ---------------FGLSDMQAESILELKLRHLAKLEEMRIKGEQDELEKERKQLEGLL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
           SS  +L  +I +E+    D+    RRT IV         +ED +  + + V +S  G++ 
Sbjct: 457 SSDRKLKKLITEEIQEAIDDFGDDRRTPIVARKEAQAFSEEDLLSNDPITVVISKQGWI- 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +      +G+  +  D         ++ +++  +S G  Y  K   LP  
Sbjct: 516 -------RAAKGHDIDVNGLSYKSGDEFLVSTKGRSNQTLVLLASNGRTYSIKAHTLP-- 566

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ +   +SL +   I + +   E+       + + A+  G     +L D    N
Sbjct: 567 SARGQGEPITGRISLEKDATIVSAVLDNEE------AHYLIASDAGYGFVAQLKDLYAKN 620

Query: 670 RSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GK  + L     +++           ++  +  G+ + F ++++   A      +  I
Sbjct: 621 KAGKATLSLPKGARVMAPVPVQDPVSGRVVAISNEGRMLAFDVASLPQMAKGKGNKMLSI 680

Query: 728 ---SLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                A  ++ VI++A V   D         +    A +R IS   +++     +    G
Sbjct: 681 PSSRAADREELVIALACVQPND---------LLTAYAGKRFISFTEKDLEEYLGERGRRG 731

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                  Q +   E  +      G GK   + D    +
Sbjct: 732 LKLPRGFQRIDSLEVKV------GEGKVVKNDDPPSQD 763


>gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu]
          Length = 712

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/740 (32%), Positives = 375/740 (50%), Gaps = 70/740 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL+YA++V+ GRA+PD+ DG KPV RRILF M +MG+  + K VK AR+ 
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDGSF+EP +L  R P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM +I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDAEISTAYESGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K  +                      +
Sbjct: 260 DLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDES ++    ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L+ 
Sbjct: 320 RDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLT 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 380 ILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LSE Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LMSAFGLSERQAEDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L++L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T   ++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPAGFSFKAGDSLYAAFQCRTPDRLIAWGSRG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D+       ++ A+ +G 
Sbjct: 582 RVYSVDVAVLPGG--RGDGVPVTSLIELESGTHLMHYFAASADQQ------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     +  +        +   +  G+ + F +  ++ 
Sbjct: 634 GFLAKVGDMVSRVKAGKAFMTIDEGAAPLAPMPVLPNAKQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQV 735
            +G    GV  ++L   + +
Sbjct: 694 LSG-GGRGVILMALDDKETL 712


>gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY]
 gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY]
          Length = 784

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 245/778 (31%), Positives = 377/778 (48%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++              S+ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPTLDFSAPADHGDSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL R+AQD++ R  LI+G
Sbjct: 61  DRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL + A  LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA++  P +  + L  ++ GPD+P G  I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIIS 240

Query: 234 RT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
               I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K 
Sbjct: 241 TDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKV 300

Query: 293 IVDIADLRDESDRQ-------------------GYRVVIELKRGASADV-ILNQLYRYTS 332
                 L  E  +                      R+VIE K G      ++  L  +TS
Sbjct: 301 KTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L++   +N+  +    +P + +L  +L+ ++ FR+  + RR+++ L+K  DR H+L G  
Sbjct: 361 LETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           + + N+DEV+ IIR +  P+ A   L+ R                           +LS+
Sbjct: 421 LVLLNIDEVIAIIRQADEPKAA---LIAR--------------------------FHLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +    
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILANPASLRRLMAKEIEADAKL 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      + +   +  E + V VS  G+V        RA++  G        
Sbjct: 512 FGDARRTLIQAEKKAVAEVKVL-DEPVTVVVSEKGWV--------RARQGHGHEAGSFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T  +++ F S G VY   V  LP G  +  G+ +  ++ L  G +  
Sbjct: 563 KSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGG--RGDGQPITTLIELEAGTQPV 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---- 687
                P       N  ++ A   G    + +      NR GK  + L   + +       
Sbjct: 621 HYFAGPA------NAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAA 674

Query: 688 -----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                +       +   +  G+ + F I+ +++   +   G+  I L   DQ+   A 
Sbjct: 675 FTSGSQPLAPATHVCCASVGGRVLTFEIAELKLM-EKGGRGLMLIDLEPKDQLAGAAA 731



 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI----NEIGALVAVFPVNDND 851
               +L     G+G  ++       NR GK        +     +         P+    
Sbjct: 627 ANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAAFTSGSQPLAPAT 686

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +   S  G ++   + E+++  +  +G+++      +++    
Sbjct: 687 HVCCASVGGRVLTFEIAELKLMEKGGRGLMLIDLEPKDQLAGAA 730


>gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
 gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
          Length = 758

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 395/796 (49%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT A +I     I   Y TGRGS+  R
Sbjct: 190 HNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYETGRGSLKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSVEAG-----EIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VV+        D ++  L+  T L+  F VN+  L    +P    L  +L  ++ FR + 
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLTEWLEFRVDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + ELM R        
Sbjct: 365 VRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AILEL+L  L  L    I+ E + L  E ++  
Sbjct: 414 ------------------FNLTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +L S  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  G
Sbjct: 456 LLLGSDRRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQELTPSEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D      +  ++ + +F  S G  +      L
Sbjct: 516 WV--------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   EDE        + AT  G       +D +
Sbjct: 568 P--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQ-----CFLLATDAGYGFICTYNDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L    + L        +E  IL  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPPNAKSLPPRLIDRSREMSILAITNEGRMLLFSLEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ AD            + A +R ++    ++   + +   
Sbjct: 680 IGIPSERAKNREELMTHLQLVPADTPV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1]
 gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1]
          Length = 758

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 397/796 (49%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HN+ E+V+ CVA++D P +DL+ LM  + GPD+PT A I+     I   Y TGRGS+  R
Sbjct: 190 HNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYETGRGSLKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E       +IV+T +P+Q +   +LE IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSVEAG-----EIVITALPHQASSGKILELIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V++        D ++  L+  T L+  F VN+  L    +P    L  +L  ++ FR + 
Sbjct: 305 VIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLTEWLEFRVDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + ELM R        
Sbjct: 365 VRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AILEL+L  L  L    I+ E + L  E ++  
Sbjct: 414 ------------------FNLTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +L S  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  G
Sbjct: 456 QLLGSERRLKTLIKKELIQDGETYGDDRRSPIVERHESKALTEQELTPSEPVTVVLSDKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R+ +        +  +  D      +  ++ + +F  S G  +      L
Sbjct: 516 WV--------RSAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   EDE        + AT  G       +D +
Sbjct: 568 P--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQ-----CFLLATDAGYGFICTFNDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  + L  +     +E  IL  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPTNAKSLPPKPIDRNREMSILAITNEGRMLLFSLEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ AD            + A +R ++    ++   + +   
Sbjct: 680 IGIPSERAKNREELMTHLQLVPADTSV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSME 747


>gi|225374475|ref|ZP_03751696.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
 gi|225213713|gb|EEG96067.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
          Length = 746

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 265/745 (35%), Positives = 410/745 (55%), Gaps = 29/745 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 3   QQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IYDAL  MAQ++   L L++G GNFGS++GD  AA RY
Sbjct: 63  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRY 122

Query: 131 TECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQK      L DL KD VDF PN+D + +EP VL  + PN+LVNG  GIAVGM T+
Sbjct: 123 TEARLQKITQEAFLSDLDKDVVDFVPNFDETEKEPEVLPVKIPNLLVNGSDGIAVGMVTS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            P HNLGEV+DG +A I NPDI+ + +ME I GPDFPTG +I  +  +   Y+TG G I 
Sbjct: 183 TPPHNLGEVIDGVIAYIKNPDINTEQMMEYIPGPDFPTGGIIANKDDLIQIYSTGMGKIK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           IRG   +E+  G +E+IV+TEIPY +   N    L  +  LV  K+  DI D+ ++S ++
Sbjct: 243 IRGKVEVEQVKGGKERIVITEIPYTMIGANIGKFLNDVYSLVETKKTNDIVDITNQSSKE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++GA    ++N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ 
Sbjct: 303 GIRIVLELRKGADTQNLINLLYKKTKLEDTFGVNMLAVAEGRPETLGLVPIIRHHVKFQY 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+ + LL K  D+  +  GL  A   +D ++ I+R S N + AR  L     +   
Sbjct: 363 ELATRKYQTLLKKELDKKEIQEGLIKACDVIDLIIEILRGSKNVKDARACLTDGVTDNIT 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K        S+ +      +  +E QT AILE+RL +L GL  + +  +       I E
Sbjct: 423 FK--------SAQSEKMASELRFTERQTTAILEMRLQKLIGLEIEALMKDHEDTLKHIAE 474

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL +R+ +  ++ +EL S K +   PR+T I      + +E  I   D+V  +   G
Sbjct: 475 YEDILENRATMAKVLIKELQSYKKQYAVPRKTLIDNLEEAVVEEKKIEEMDVVFLMDRFG 534

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V +SVY   +             +     +        +  F++ G ++  KV  L
Sbjct: 535 YAKTVDVSVYERNKEAA----------DTENRYILTCKNTDKICIFTNKGQMHLLKVLDL 584

Query: 607 PIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           P G  + +G  + N+ + +  E     I+       +  +  ++F TK   ++    S+F
Sbjct: 585 PYGKFRDKGIPIDNLSNYDSSEENFIYIINL----GAIIHSRLLFGTKTAMLKMVDGSEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + +    + KL+  DE+L V   T E  +++ ++    +R   S       + +VGVR
Sbjct: 641 D-VAKRTTASTKLNEDDELLIVHAMTGEETVVMQSEKEMFLRIEAS-TIPEKKKGAVGVR 698

Query: 726 GISLAKGDQVISMAIVLHADADYDE 750
           G+ L  GD + ++ ++   +    E
Sbjct: 699 GMKLNAGDALSNIYVLDGENEQTVE 723



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + +++ 
Sbjct: 620 HSRLLFGTKTAMLKMVDGSEFDVAKR------TTASTKLNEDDELLIVHAMTGEETVVMQ 673

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAESTE 910
           S+K   +R+  + I    +   GV        + + ++  +  E+E   E +  E
Sbjct: 674 SEKEMFLRIEASTIPEKKKGAVGVRGMKLNAGDALSNIYVLDGENEQTVEVKGKE 728


>gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 856

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 264/770 (34%), Positives = 400/770 (51%), Gaps = 70/770 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ +   D    +      +   + + YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 40  MTDTVDDPDNPISEFAEP--LRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAM 97

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    ++ K ++ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 98  RELRLNSGGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 157

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ L +D VDFR NYDG+ +EPVVL A +P++L NG  
Sbjct: 158 DGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAA 217

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L+  I GPDFPTG VI+  R  I  
Sbjct: 218 GIAVGMATNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAE 277

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R    +E     + QI+VTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 278 AYRTGRGSIRLRSKWEVEDLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADV 337

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 338 RDESADDVRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVL 397

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR EV++RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 398 RAFLDFRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAA---LM 454

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG--------------------------------- 445
              W+      +    ++  Y     G                                 
Sbjct: 455 YEDWSRPHQDTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRF 514

Query: 446 ---TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
              +  LS+VQ  AIL +RL  L  L   ++  E ++L  E     D+L S     G I 
Sbjct: 515 VGRSEGLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIG 574

Query: 503 QELLSVKDELDTP-----RRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            EL   K +         RRT+  E     D+  E  I RE + +  S +G+++ +   V
Sbjct: 575 DELKDAKKKFGKDYVAGARRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGHV 634

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
                           +D D     F   T   ++ F++ G  Y      LP G  +  G
Sbjct: 635 DLT--------RDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGG--RGMG 684

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + L  ++ L     I  +     D        ++ A+K GN      +D +   ++GK  
Sbjct: 685 EPLRLMVDLPNDVEIIDMFVHAPDRK------LIVASKGGNGFIVPEADVVAQTKNGKQV 738

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + +   D++  +      + + + ++  + + FPI+ +         GVR
Sbjct: 739 LNVS--DDVAKLVKPVAGDHVAVVSENRKLLVFPIAELPEMG--RGKGVR 784


>gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
 gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
          Length = 749

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 248/809 (30%), Positives = 399/809 (49%), Gaps = 75/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE    ++  ++ GI  +S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTE----TNTIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 57  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +LG+ TVD+ PN+DG+ +EP +L A+ PNVL+NG 
Sbjct: 117 DDPKSFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVV   V ++D P   L  L EII+GPD+PT A +I  R  I 
Sbjct: 177 TGIAVGMATDIPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             YATGRG + +R V   E        IVVT +P+Q + + +LE+IA+ ++ K++  +AD
Sbjct: 237 QIYATGRGGLRMRAVWDTEHGD-----IVVTALPHQASGSRVLEQIAQQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        D +++ L+  T L+  + VN+  +    +P   +L 
Sbjct: 292 LRDESDHENPTRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDGRPGVRSLD 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           GILK ++ FR E V RR  Y L + + R H+L G   A  N+DEV+ IIR   +P+ A  
Sbjct: 352 GILKQWLKFRRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LS++Q  AILEL+L  L  L    IR 
Sbjct: 410 -LIAR--------------------------FELSDIQAEAILELKLRNLAKLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E       L S +RL  +IK+EL ++ ++    RR+ +   E      + + +
Sbjct: 443 EQDELEKERDWLEKTLGSEARLKTLIKKELTAIAEKYGDDRRSPLASREEAQAFSELELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + + V +S  G++        RA +      + +  +  D         ++   +   
Sbjct: 503 TADPITVVLSEKGWI--------RAAKGHDMDPASLSYKSGDSFKLAARGRSNQPAVIID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   ++   G     +M         +    + ++ 
Sbjct: 555 STGRAYTLATHNLP--SARGQGEPLTGRINPPSGAGFDGLMM------GDSGQRCLLSSD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISA 712
            G      L +    NR+GK A+ L +   ++S     ++   +   +  G+ + FP++ 
Sbjct: 607 AGYGFITTLGELQTKNRAGKAALTLPAGARVVSPAPIGEDAQWVAAVSNEGRLLLFPLAD 666

Query: 713 IRVFAGRNSVGVRGI---SLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +   +      +  I        ++ +I+ A++   D            + A +R ++  
Sbjct: 667 LPSLSRGKGNKIIAIPGPRARDREEFMIATAVLRENDG---------LTVWAGKRHLTLK 717

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             E+     +    GN      Q ++  E
Sbjct: 718 RSELEHYHGERGRRGNKLPRGFQRVERME 746



 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 13/116 (11%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q  L  S+ G+G  T+  + +  NR+GK               +V+  P+ ++ Q
Sbjct: 594 MGDSGQRCLLSSDAGYGFITTLGELQTKNRAGKAALTLPAGAR-----VVSPAPIGEDAQ 648

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
            +  VS++G L+  P+ ++   SR  KG  I +        ++E +++   +RE++
Sbjct: 649 WVAAVSNEGRLLLFPLADLPSLSRG-KGNKIIAIPGPRARDREEFMIATAVLREND 703


>gi|315656631|ref|ZP_07909518.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492586|gb|EFU82190.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 844

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 299/901 (33%), Positives = 425/901 (47%), Gaps = 132/901 (14%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M QMG+  +K +VK
Sbjct: 7   ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQMKQMGLTPDKGHVK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
             R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+D D PAA RYTE 
Sbjct: 67  SQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSLD-DGPAAARYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGANGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ AY TGRG  + R  
Sbjct: 186 NVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREAYETGRGIFITRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
           + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +D SDR    R+V+
Sbjct: 246 ATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQDLSDRTHGMRLVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+ FV  R EV  RR
Sbjct: 306 EVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQVFVDHRVEVTRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM              
Sbjct: 366 SEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q   ILELRL RLT   R ++  E + L   I E   IL+
Sbjct: 413 -------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADELRQAIAELEQILA 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L  +++ ++      L TPRRT ++E               ++  ++    V  VP
Sbjct: 460 STEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVLGAMT----VSDVP 515

Query: 553 LSVYRAQRRGGKG---------RSGVVMRDEDF---VTDLFIVSTHTSVLFFSSLGFVYK 600
           L V     R   G          +G V R E F   +    +  T  S    +S GFV +
Sbjct: 516 LEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGVVTSSGFVVR 575

Query: 601 EKVWRLPIGS----------------------------------PQARGKA-LINILSLN 625
             V  LP G                                       G   L     L 
Sbjct: 576 LDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLE 635

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            GE +  I+   +DE+      V   T  G V+R +       +R   I   L+  D+++
Sbjct: 636 DGETVVGILTLDKDET------VGMMTARGIVKRMRPDYPSTQDRFSII--NLEGTDQLI 687

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
               C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV    
Sbjct: 688 YAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVPDEL 746

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                       M+A                                             
Sbjct: 747 VAATTVATVAAIMNAMPGANQSSI------------------------------------ 770

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
               K T    + +  R  +G+R     K      +  V P    D I  +   G  +++
Sbjct: 771 ----KLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMAFVGP----DPIHAIDAHGKPVKL 822

Query: 866 P 866
           P
Sbjct: 823 P 823



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           K++ +  ++ +G  KR         +R         +  +     L+      D+ QI++
Sbjct: 648 KDETVGMMTARGIVKRMRPDYPSTQDR-------FSIINLEGTDQLIYAGACPDDAQIVM 700

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 701 ISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDE 745



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
               L  G+ V+    +L  D D    +   + +  + R     T++  S+ N    +  
Sbjct: 630 AAARLEDGETVVG---ILTLDKDETVGMMTARGIVKRMRPDYPSTQDRFSIINLEGTDQL 686

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I           +  I+ +S      RT +   R   R+  G+    + +  +   ++A 
Sbjct: 687 I----YAGACPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQ---VIAG 739

Query: 845 FPVNDN-------------DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             V D                 +  +++ ++   P++   +  R  +GV +    K E  
Sbjct: 740 AIVPDELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYA 799

Query: 892 VSVERI 897
           + +  +
Sbjct: 800 LDMAFV 805


>gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
 gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
          Length = 773

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 252/772 (32%), Positives = 385/772 (49%), Gaps = 77/772 (9%)

Query: 1   MTEHI----ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++      S D  E      +++ +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFASPDAPESDA---LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IAD------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQS 335
                                +RDES ++    ++   +  + D    +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR S  P+ A                                   LSE Q 
Sbjct: 418 LNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT I +      +   +      V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRTLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +    
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYY 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQE 693
             P D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +      
Sbjct: 618 AAPADQQ------LLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 722


>gi|88809359|ref|ZP_01124867.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
 gi|88786578|gb|EAR17737.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
          Length = 821

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 278/759 (36%), Positives = 415/759 (54%), Gaps = 53/759 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   LD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+++I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVREPDLSNDKLLKLIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R TSLQS F   M+AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L KA DR  V+ GL  A+ +L  V+ +I+ + +   AR  LM        
Sbjct: 363 LTLIRRTTHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL R+ +R E   L  + + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + +EL  +K    TPRRTR+VEG   +  E    +           
Sbjct: 457 LKLLLDNRDQLLDALTKELRQLKKRFATPRRTRLVEGGDHLLAERAANQRPNAELQRRQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                P S    Q  G          G+          D       +  +     +L  +
Sbjct: 517 LDALPPDSRILIQDDGQVKVISPQLMGRLHLNEPTALGDEPSPARVILPIKPVAKLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV---F 650
           + G V     W      P +  + L   L   QG+ + +++  P+ ++  N   V     
Sbjct: 577 ASGRV-ALIRWEFAGQQPGSLERFLPTAL---QGDPVVSVLQLPDADADSNKAAVSSLGL 632

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G  +R  + + + ++      +KL    E+ +   C +   + L + LG+ +  P+
Sbjct: 633 LSSDGRFKRLPMQELLDLSGRAASVVKLKEGVELKTAVICREGGTLSLISDLGRVLPLPV 692

Query: 711 SAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
           +       G+ + G   + L  G+ +I+         D 
Sbjct: 693 TEDNLPLMGKLAQGPVTMRLLPGETLIAAVATDPEQQDP 731



 Score = 42.6 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 11/157 (7%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEG-NISEERCQELKLKEQFILTVSEKGFG 809
           R+  ++   A ++  S +    T+L+ D  V    + +      K     +  +S  G  
Sbjct: 580 RVALIRWEFAGQQPGSLERFLPTALQGDPVVSVLQLPDADADSNKAAVSSLGLLSSDGRF 639

Query: 810 KRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV- 867
           KR    +   +S R      A  V K+ E   L       +   + L+SD G ++ +PV 
Sbjct: 640 KRLPMQELLDLSGR------AASVVKLKEGVELKTAVICREGGTLSLISDLGRVLPLPVT 693

Query: 868 -NEIRIASRATKGVVIFSTAKDER-VVSVERIRESEI 902
            + + +  +  +G V       E  + +V    E + 
Sbjct: 694 EDNLPLMGKLAQGPVTMRLLPGETLIAAVATDPEQQD 730



 Score = 38.4 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 70/497 (14%), Positives = 161/497 (32%), Gaps = 53/497 (10%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             VV  +R   +P+   ++L +R+   S+   ++  + D      S   +  + +  R  
Sbjct: 304 MRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRQLLQTFLDYR-- 361

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            EL L R T        + L  +   I     +     R++ +I++   +          
Sbjct: 362 -ELTLIRRTTHALRKAEDRLEVVEGLITALQSL----QRVIAMIQEAQDAAA-------- 408

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGY--VKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                  L +  +    + D V+ +       ++R  L     + R  + R  +++ + D
Sbjct: 409 ---ARASLMVHLDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQRLKLLLDNRD 465

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            + D            F++          RL  G      +   N     + +R   +  
Sbjct: 466 QLLDALTKELRQLKKRFATPRRT------RLVEGGDHLLAERAANQRPNAELQRRQALDA 519

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
            P D         +     G V+        +++ +   A+     DE            
Sbjct: 520 LPPDSR-------ILIQDDGQVKVISPQLMGRLHLNEPTAL----GDEPSPARVILPIKP 568

Query: 696 IL---LTTKLGQC--VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +      T  G+   +R+  +  +  +          +  +GD V+S+  +  ADAD ++
Sbjct: 569 VAKLLAVTASGRVALIRWEFAGQQPGSLER----FLPTALQGDPVVSVLQLPDADADSNK 624

Query: 751 RIC----YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                   +      +RL   +  +++             E +   +  +   +  +S+ 
Sbjct: 625 AAVSSLGLLSSDGRFKRLPMQELLDLSGRAASVVKLKEGVELKTAVICREGGTLSLISDL 684

Query: 807 GFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           G        +    +  +  +G     +     + A VA  P    D ++L S  G +  
Sbjct: 685 GRVLPLPVTEDNLPLMGKLAQGPVTMRLLPGETLIAAVATDP-EQQDPLLLFSRHGRIKP 743

Query: 865 VPVNEIRIASRATKGVV 881
           + ++ +R+  R   GV+
Sbjct: 744 LSLDTVRLCQRGNLGVI 760


>gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
 gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
          Length = 758

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 247/757 (32%), Positives = 391/757 (51%), Gaps = 69/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGV 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV +  V +I+NP  DLDALME ++GPD+PT A +I  +  +K
Sbjct: 174 TGIAVGMATDIPPHNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V H E        IV+T +P+Q + A +LE+IA  +R K++  + D
Sbjct: 234 KVYKSGRGSIKMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVED 288

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      + ++N L+  T L+  F  N+  L    +P+   L+
Sbjct: 289 LRDESDHENPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLV 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ +R   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P   + 
Sbjct: 349 QIIAEWLEYRRTTVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDP---KA 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS +Q  AILE++L +L  L    IR 
Sbjct: 406 ELMSR--------------------------FDLSAIQADAILEIKLRQLAKLEEIKIRG 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E ++   +L S  RL  +IK+E+L+  ++    RR+ +V  E    + + D I
Sbjct: 440 EQDELSKEREQLEKLLGSERRLNTLIKKEILADAEKYGDERRSPLVEREEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      S +  +  D         ++   +F  
Sbjct: 500 PSEAITVVLSEKGWI--------RHAKGHEVDPSTLNYKSGDSYLAHARGKSNLPAIFLG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  I  ++   +D+        + A+ 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPITGRLNLTPGTNIRQVLMAEDDQ------LWLMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K +D +  N+SGK  + +     +L  +     + + IL  T  G+ + FPI 
Sbjct: 604 AGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            +          +  I        ++ +S   V+ AD
Sbjct: 664 DLPQLGKGKGNKIINIPSARSKAREEFLSYLTVISAD 700



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +         G   ++ A+G   +    +      Y
Sbjct: 498 LIPSEAITVVLSEKGWIRHAKGHEVDPSTLNYKSGDSYLAHARGKSNLPAIFLGSDGRSY 557

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +   +Q  L  S+ G+
Sbjct: 558 ALESHSLPSARSQGEPITGRLNLTPG-----------TNIRQVLMAEDDQLWLMASDAGY 606

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G    S D    N+SGK +     +        VA     +NDQI+ ++++G ++  P+ 
Sbjct: 607 GFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADI---ENDQILAITNEGRMLLFPIK 663

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 664 DLPQLGKG-KGNKIINI 679


>gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3]
 gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 251/772 (32%), Positives = 385/772 (49%), Gaps = 77/772 (9%)

Query: 1   MTEHI----ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++      S D  E      +++ +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFASPDAPESDA---LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IAD------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQS 335
                                +RDES ++    ++   +  + D    +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR S  P+ A                                   LSE Q 
Sbjct: 418 LNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT I +      +   +      V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRTLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +    
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYY 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQE 693
             P D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +      
Sbjct: 618 AAPADQQ------LLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  + 
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPSG 722


>gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 770

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/796 (30%), Positives = 406/796 (51%), Gaps = 74/796 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II      + GI  + +    + SYL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSQEII----INKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP +L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV + C  ++DN   +L  L+  ++GPD+PT A +I  ++ I+
Sbjct: 177 TGIAVGMATDIPPHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V + E        I++T +P+Q +   +LE+IA  ++ K++  ++D
Sbjct: 237 KMYETGRGSIKMRAVYYEEAGD-----IIITALPHQASGGKILEQIAAQMQAKKLPMVSD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++   R      + ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR++ VVRR ++ L+K   R H+L GL IA  N+DEV+RIIR+   P+    
Sbjct: 352 MILSEWLVFRKDTVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                         T  LS++Q  AILEL+L  L  L    I+ 
Sbjct: 410 ---------------------------LMDTFSLSDIQAEAILELKLRHLAKLEEMKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E ++L  E  E   IL S  RL  +IK+E+L+  +     RR+ I+E      + +++ I
Sbjct: 443 EQDALAKERDELQLILGSDRRLKTLIKKEILAAAELYGDDRRSPIIERSESKALTEKELI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D         ++   +F  
Sbjct: 503 PSEPVTVVLSEKGWA--------RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFMD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  +      LP  S +++G+ +    S+  GE +  ++   +++        + A+ 
Sbjct: 555 TSGRAFSCDAHVLP--SARSQGEPITGRFSIVSGETVEHVVMGQDEQQ------YLIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G     K +D I  NR+GK  + L    +++S +       +  L  +  G+ + FP+ 
Sbjct: 607 AGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSDWCLAISNEGRMLMFPLR 666

Query: 712 AIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +          +  I  AK    ++ + +  V+   A+          + A +R ++  
Sbjct: 667 DLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANVK--------VLAGKRGMTLT 718

Query: 769 TEEITSLKNDSSVEGN 784
            +++T  + +    GN
Sbjct: 719 ADDLTHYQGERGRRGN 734



 Score = 41.1 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +   EQ  L  S+ G+G      D    NR+GK   +       +   +++  PV+
Sbjct: 590 EHVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYLSLP-----KSAKVISPQPVH 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D  +D  + +S++G ++  P+ ++    +  KG  I S 
Sbjct: 645 DLSSDWCLAISNEGRMLMFPLRDLPSLGKG-KGNKIISI 682


>gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
 gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
          Length = 784

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/778 (31%), Positives = 377/778 (48%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++              S+ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPTLDFSAPADHGDSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL R+AQD++ R  LI+G
Sbjct: 61  DRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL + A  LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA++  P +  + L  ++ GPD+P G  I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIIS 240

Query: 234 RT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
               I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K 
Sbjct: 241 TDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKV 300

Query: 293 IVDIADLRDESDRQ-------------------GYRVVIELKRGASADV-ILNQLYRYTS 332
                 L  E  +                      R+VIE K G      ++  L  +TS
Sbjct: 301 KTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L++   +N+  +    +P + +L  +L+ ++ FR+  + RR+++ L+K  DR H+L G  
Sbjct: 361 LETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           + + N+DEV+ IIR +  P+ A   L+ R                           +LS+
Sbjct: 421 LVLLNIDEVIAIIRQADEPKAA---LIAR--------------------------FHLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +    
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILANPASLRRLMVKEIEADAKL 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      + +   +  E + V VS  G+V        RA++  G        
Sbjct: 512 FGDARRTLIQAEKKAVAEVKVL-DEPVTVVVSEKGWV--------RARQGHGHEAGSFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T  +++ F S G VY   V  LP G  +  G+ +  ++ L  G +  
Sbjct: 563 KSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGG--RGDGQPITTLIELEAGTQPV 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---- 687
                P       N  ++ A   G    + +      NR GK  + L   + +       
Sbjct: 621 HYFAGPA------NAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAA 674

Query: 688 -----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                +       +   +  G+ + F I+ +++   +   G+  I L   DQ+   A 
Sbjct: 675 FTSGSQPLAPATHVCCASVGGRVLTFEIAELKLM-EKGGRGLMLIDLEPKDQLAGAAA 731



 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 4/104 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI----NEIGALVAVFPVNDND 851
               +L     G+G  ++       NR GK        +     +         P+    
Sbjct: 627 ANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAAFTSGSQPLAPAT 686

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +   S  G ++   + E+++  +  +G+++      +++    
Sbjct: 687 HVCCASVGGRVLTFEIAELKLMEKGGRGLMLIDLEPKDQLAGAA 730


>gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois]
 gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois]
          Length = 894

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 283/922 (30%), Positives = 479/922 (51%), Gaps = 78/922 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I+     S+L Y+++VI  RA+PDL+DGLKPVHRRIL+   +  +  + ++ K
Sbjct: 20  SNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSRFKK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + G VMG YHPHG+ +IYDAL R++QD+ +R  L+EGQGNFGS+DGD PAA RYTE 
Sbjct: 80  SATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRYTEI 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K     L  + ++ VDF  NYDGS QEP +L    P++L+NG  GIAVGMAT IP H
Sbjct: 140 KLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D  +A+IDNP++  +  +E I+GPDFPTG  I+G   +K  ++ G G I++R  
Sbjct: 200 NLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEIIGIESVKRYHSKGLGKIILRSK 259

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-----------IADLRDE 302
             I     ++ Q+++ EIP+ + KA +++KIA+L  E +              + ++RDE
Sbjct: 260 VEI---DANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQRFLQNIRDE 316

Query: 303 SD-RQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           S+ ++G R++IE K+G   +    +LN LY+Y  LQ  F+VN+  L   KP+   +  I+
Sbjct: 317 SNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGKPQLLGIGAII 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  + +++ R+T++ L + + R H+L G    V NLDEV+RII    NPE   +E  
Sbjct: 377 RNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVIIQE-- 434

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+ VQ + I +L L +L  +    + NEL+
Sbjct: 435 ---------------------------KYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELD 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-DTPRRTRIVE-GLLDMEDEDCIVRE 536
               +  E   +L  +++    IK+EL+ +K+E  +  R+T I   G+  +   DCI +E
Sbjct: 468 QKRAKRDEYQALLDDKNKQYENIKKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIPKE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSL 595
           D+++ V+   Y+  +PL       R   G +     +  D   DL + S+H  +  F++ 
Sbjct: 528 DIILKVTQNNYIAAIPLDKIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNY 587

Query: 596 GFVYKEKVWRLPIG---SPQARGKALINILSLN-QGERITTIMPFP----EDESSWNNLY 647
             V+K K   + I        + + L N++ L  + E+   I+        +E  W ++ 
Sbjct: 588 ARVFKLKAHEIKISANKKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDID 647

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           ++FATK G +R+     F   +  +SGK AM+L   D++  V    ++++ILL +   + 
Sbjct: 648 LLFATKFGFIRKISFYKFFLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKV 707

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF  S +     R + GVRGI+L   D ++    I   +  D D+ +  ++    +   
Sbjct: 708 IRFKSSILEAKRTRKTFGVRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGKITS 767

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR-S 823
           +    +EI  +K          E+  ++ K  E   L             Y+ ++S +  
Sbjct: 768 LDSIKQEIVKVKEYDEETKQEVEKIIKQDKKDEDGEL------------EYEIKLSKKWG 815

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVI 882
           GKG+ A    +  +   L+A   + D+DQI+L+++   + R   ++I +   R T+G  +
Sbjct: 816 GKGVLAYKNKENEK---LIACVLIKDSDQILLMTNTDHINRFQASQISVRKTRRTEGSQL 872

Query: 883 FSTAKDERVVSVERIRESEIVD 904
            S   +E++V   + +  + ++
Sbjct: 873 ISLKPNEKLVFFAKYQLPDDIE 894


>gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 759

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/746 (31%), Positives = 379/746 (50%), Gaps = 61/746 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
             G    ++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   HDGSERQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+ PN+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKYAEVLLGELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HN+ E+    V +ID P + LD ++E ++GPD+PT A +I  R  I+  Y TGRGS+ +
Sbjct: 186 PHNVRELAKALVELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEIRKIYRTGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R +   E       ++V++ +P+Q + A +LE+IA  +R K++  + DLRDESD +    
Sbjct: 246 RAIWKKEDG-----EVVISALPHQTSGAKVLEQIASQMRAKKLPMVEDLRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++        D ++  L+  T L+  + +NM  +    +P    L+ IL  ++A+R +
Sbjct: 301 LVIVPRSNRVDMDQVMAHLFATTDLEKSYRINMNMIGLDNRPAVKNLLEILTEWLAYRRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P   + +L++R       
Sbjct: 361 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEP---KPKLIER------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +SE Q  AILEL+L  L  L    IR E + L  E    
Sbjct: 411 -------------------FGISETQAEAILELKLRHLAKLEEVKIRGEQDELAKERDHL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
             +L+S  +L  +IK+E+ +        RR+ +   E    M + D I  E + + +S  
Sbjct: 452 QALLASERKLNTLIKKEIQADAQAYGDDRRSPLQEREEAKAMSEHDFIPSEPVTIVLSEG 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R+ +      +G+  +  D         ++  V+F  S G  Y      
Sbjct: 512 GWV--------RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPTT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S + +G+ L   L+   G  I  ++   +D+       ++ A+  G       +D 
Sbjct: 564 LP--SARGQGEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCTFNDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  NR+GK  + L    + L        ++ +L  T+ G+ + FP++ +   +      +
Sbjct: 616 VARNRAGKAMITLPENAKALPPIEINGADDMLLAITQAGRMLMFPVNDLPQLSKGKGNKI 675

Query: 725 RGI---SLAKGDQVISMAIVLHADAD 747
             I     A G+  ++   VL     
Sbjct: 676 VSIPSAQAASGEDKLAWLFVLPPQTS 701



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +      AL  +     +D 
Sbjct: 591 MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPENAK----ALPPIEINGADDM 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PVN++   S+           K  ++VS+   + +   D
Sbjct: 647 LLAITQAGRMLMFPVNDLPQLSK----------GKGNKIVSIPSAQAASGED 688


>gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
 gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
          Length = 803

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 251/737 (34%), Positives = 393/737 (53%), Gaps = 32/737 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ D  + K   + ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +
Sbjct: 35  MNDDALDPKMNPTETLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKL 94

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD P
Sbjct: 95  ASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 154

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  LL+ L ++ VDFR NYDG+ +EPVVL A +PN+L NG  GIAVG
Sbjct: 155 AAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVG 214

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATG 244
           MATNIP HNL E++  C+ +I +P+   + L++ I GPDFPTG VI+  +  I  AY TG
Sbjct: 215 MATNIPPHNLEELIGACLHLIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIAEAYRTG 274

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G   +R    +E     + Q+++TEIPYQV K+ ++EK+AE++  K++  +AD+RDES 
Sbjct: 275 KGGFRLRCKYEVEDLGRGQWQVIITEIPYQVQKSRLIEKLAEIIELKKVPILADVRDESA 334

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVA 363
                V+    +    +V++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+ 
Sbjct: 335 EDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLD 394

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +V++RR+ + + K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W 
Sbjct: 395 HRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKA---LMAEDWG 451

Query: 424 ASDIKDLIDLID-DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +  + + +         + S+  M L++VQ  AIL +RL  L  L   ++  E ++L +
Sbjct: 452 KTHARAMDEADYVSPLTGLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALML 511

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEG--LLDMEDEDCIVR 535
           E     D+L S       I  +L   +           RRT       + D+  E  I +
Sbjct: 512 ERAGLEDLLDSEDLQWKTIADQLRETRKLFGSNSEGGARRTAFAVAGVVEDVPLEAMIDK 571

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V  S +G+++ +   +  A          +  +D D    +F   T   +L F S 
Sbjct: 572 EPVTVVCSKMGWIRALTGHIDLA--------RELKFKDGDEGRFVFHAQTTDRLLVFGSN 623

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y      LP G  +  G+ L  ++ L     I  +              ++ A+  G
Sbjct: 624 GRFYTMGTSTLPGG--RGMGEPLRLMVDLPNEAEIVALFIHRAGNK------LLVASSAG 675

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           +       D I   R+GK  + +   D    V +    + +    +  + + FP+  +  
Sbjct: 676 DGFVVPEDDVIAQTRAGKQVLNVK-GDVRARVCSTVTGDYVACVGENRKVLLFPLDELPE 734

Query: 716 FAGRNSVGVRGISLAKG 732
                  GVR      G
Sbjct: 735 MG--RGKGVRLQKYKDG 749



 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      +L  S  G G      D     R+GK +          + + V        D 
Sbjct: 661 IHRAGNKLLVASSAGDGFVVPEDDVIAQTRAGKQVLNVKGDVRARVCSTVT------GDY 714

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  V +   ++  P++E+    R  KGV +      
Sbjct: 715 VACVGENRKVLLFPLDELPEMGRG-KGVRLQKYKDG 749


>gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
 gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
          Length = 775

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 256/727 (35%), Positives = 393/727 (54%), Gaps = 37/727 (5%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S  ++  + + YL YA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  N  + K A+
Sbjct: 21  ISEPLSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGGFRKSAK 80

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           ISG+VMG YHPHG+AAIYDA+AR+AQD+ +R  L++GQGNFG++DGD PAA RYTE R+ 
Sbjct: 81  ISGDVMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARYTEARMT 140

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL+ L +D V+FR NYDG+ QEP VL A+ PN+L NG  GIAVGMATNIP HNL 
Sbjct: 141 AVAEALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNIPPHNLD 200

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           E++  C+ +I  PD   + L+  ++GPDFPTG VI+  R  +   Y TG+G   +R    
Sbjct: 201 ELIAACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFRVRATHE 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     + QIVVTEIPYQV K+ ++EK+AEL++ K++  +AD+RDES      V+    
Sbjct: 261 IEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDESADDIRIVLEPRS 320

Query: 316 RGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +    DV++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+  R++V++RR++
Sbjct: 321 KTVDPDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQDVLMRRSR 380

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + + +   R  VL G  IA  NLD V+ IIR+  +P+ A   LM+  W    ++ +    
Sbjct: 381 HRMAQIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAA---LMREDWGQDFVRAM---- 433

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            ++ Y     G   L+EVQ  AIL +RL  L  L   +++ E + L  E     D+L+  
Sbjct: 434 SEADYVSPKPGEGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGLEDLLAEE 493

Query: 495 SRLLGIIKQELLSVKDEL-----DTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGY 547
           S   G I +EL  V+ +         RRT+  E   + ++  E  I RE + +  S +G+
Sbjct: 494 SLQWGRIAEELREVRKKFGSRADGGARRTQFAEAGNIEEVSLEAMIEREPVTIVCSQMGW 553

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++ +   V  +Q         +  RD D         T   +L   S G VY      LP
Sbjct: 554 IRAMKGHVDLSQE--------MKFRDGDGPRFAIHAETTDKLLILGSQGRVYTLGANGLP 605

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  +  G+ L  ++ L    +I  +               + A+  G+       D + 
Sbjct: 606 GG--RGLGEPLRLMVDLPNEVQIVDLFV------HHPGAKRLMASSAGDGFLVAEEDILA 657

Query: 668 INRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             RSGK  + +       +       +++ + +  +  + + FP++ +         GVR
Sbjct: 658 QTRSGKQVLNVKDGVTASVCRA-VAPEDDHVAVVGENRKLLVFPLTELPEMG--RGKGVR 714

Query: 726 GISLAKG 732
                 G
Sbjct: 715 LQKYKDG 721



 Score = 41.4 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 22/204 (10%)

Query: 688 ETCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVR-GISLAKGDQVISMAIVLHA 744
               +E   ++ +++G  + ++  +   +    R+  G R  I     D+++ +      
Sbjct: 537 AMIEREPVTIVCSQMGWIRAMKGHVDLSQEMKFRDGDGPRFAIHAETTDKLLIL------ 590

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                     +  + A          E   L  D   E  I +        K    L  S
Sbjct: 591 -----GSQGRVYTLGANGLPGGRGLGEPLRLMVDLPNEVQIVDLFVHHPGAKR---LMAS 642

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G G   +  D     RSGK +        + + A V      ++D + +V +   L+ 
Sbjct: 643 SAGDGFLVAEEDILAQTRSGKQVLNVK----DGVTASVCRAVAPEDDHVAVVGENRKLLV 698

Query: 865 VPVNEIRIASRATKGVVIFSTAKD 888
            P+ E+    R  KGV +      
Sbjct: 699 FPLTELPEMGRG-KGVRLQKYKDG 721


>gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8]
 gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8]
          Length = 778

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 255/740 (34%), Positives = 366/740 (49%), Gaps = 70/740 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 27  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 87  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP HNL EV
Sbjct: 147 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
              CVA+I +P +    L  +I GPDF  G  I+     I   YA GRGS+ +R     E
Sbjct: 207 AQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQFE 266

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           + +  + Q+VVTE+P   +   +LE+I E+   K                         +
Sbjct: 267 EMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLDAV 326

Query: 300 RDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++          D  +N L   TS++S  S+N+V +    +P +  L  
Sbjct: 327 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLRD 386

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   VVRRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P  A   
Sbjct: 387 ILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAA--- 443

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+R                            LSE Q   ILE+RL +L  L    I  E
Sbjct: 444 LMER--------------------------FKLSERQAEDILEMRLRQLARLEGFKIEQE 477

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L     +     ++L + + L  ++ +E+ +   +    RRT I      + +   +  E
Sbjct: 478 LADKREDQVRLQELLDNPASLKRLLIKEIEADAKQYGDDRRTLIETAERAVLETKVL-DE 536

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G++        RA++  G   S    +  D +   F   T  +++     G
Sbjct: 537 PVTVIVSQKGWL--------RARQGHGHDASQFGFKQGDDLYGAFECRTTDTLIAVGDNG 588

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP  S +  G+ +  ++ L  G RI   +    D         + AT+ G 
Sbjct: 589 RVYSVPVGGLP--SARGDGQPVTTMIDLGSGTRIVHTIAAAPDSRW------LLATRGGY 640

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
               KLSD +   R+GK  + L+  DE+L  V        + L +  G+ + F +  ++ 
Sbjct: 641 GFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFAGAKQLALLSHKGKFLVFGLDEVKT 700

Query: 716 FAGRNSVGVRGISLAKGDQV 735
            +G    G   + L   D++
Sbjct: 701 LSG-GGRGTILMGLDGTDKL 719


>gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
 gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
          Length = 758

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/757 (31%), Positives = 385/757 (50%), Gaps = 66/757 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EPVVL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV   C  ++DNP+  LD LM+ I+GPD+PT A +I  R  I+
Sbjct: 177 TGIAVGMATDIPPHNAREVAYACAELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GSI  R V   E        IV+T +P+Q + A ++E+IA  +  K++  + D
Sbjct: 237 KIYETGKGSIKQRAVWSEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        + ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P     
Sbjct: 352 TILSEWIQFRRETVRRRLQFRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDEP----- 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            ++E Q  AILEL+L  L  L    +R 
Sbjct: 407 ------------------------GKVMVERFNITETQAEAILELKLRHLAKLEEFKLRA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E N L  E  +   IL S  RL  ++K+ELL+  ++    RRT +VE    + + +++ I
Sbjct: 443 EQNELAEERDKLELILGSERRLNTLLKKELLADAEKYGDDRRTPLVERATAVALTEKELI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      +G+  +  D         ++   +F S
Sbjct: 503 PSEPVTVILSDKGWV--------RAAKGHDVDVAGLSYKAGDSYLAHACGRSNQQAVFLS 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  Y  +   LP  S +++G+ L    +L  GE +  ++   E E        + A+ 
Sbjct: 555 TLGRTYALESHTLP--SARSQGEPLTGRFALGAGEEVRHLVMGNEGEP------YLIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G        D I  N++GK  + +    ++++ +     + +  +  +  G+ + FP++
Sbjct: 607 AGYGFVCTYDDLIGKNKNGKALLTVPEGGQVMAPQKIGSPETDLCMAISNEGRMLLFPLN 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            + V        +  I    +   ++ + MA V+   
Sbjct: 667 TLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQG 703



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 20/192 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD  ++ A                 +      L S  ++    
Sbjct: 518 RAAKGHDVDVAGLSYKAGDSYLAHACGRSNQQAVFLSTLGRTYALESHTLPSARSQG--E 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E R   +  + +  L  S+ G+G   +  D    N++GK +       
Sbjct: 576 PLTGRFALGAGEEVRHLVMGNEGEPYLIASDAGYGFVCTYDDLIGKNKNGKALLTVP--- 632

Query: 835 INEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------A 886
             E G ++A   +   + D  + +S++G ++  P+N + +  +  KG  + S       A
Sbjct: 633 --EGGQVMAPQKIGSPETDLCMAISNEGRMLLFPLNTLPVLGKG-KGNKLISIPSARVKA 689

Query: 887 KDERVVSVERIR 898
           ++E VV    I 
Sbjct: 690 REEFVVMAAVIP 701


>gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T]
 gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T]
          Length = 814

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/739 (32%), Positives = 376/739 (50%), Gaps = 70/739 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+  RA+P + DGLKPV RRILF M +M +    K+VK AR+ 
Sbjct: 67  LALDRYAERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVV 126

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL   
Sbjct: 127 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 186

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNL EV
Sbjct: 187 AELLLSEIDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 246

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +    +I +P+  LD ++ ++ GPDFP G   I     I+ AYATGRGS+ +R    IE
Sbjct: 247 AEATCHLIRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIE 306

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE--------------- 302
           + +  + + +V E+P+ V+ A +L +I  L   +      ++  E               
Sbjct: 307 ELARGQWRAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTV 366

Query: 303 ----SDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
               SD+   R+V+E K    + D  +  L  +TSL++  SVNM  +    +P++  L+ 
Sbjct: 367 RDESSDKAPVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQ 426

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ FR   V RRT++ L++   R H+L G  IA  +++EV+R+IR S  P+ A   
Sbjct: 427 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPA--- 483

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+VQ   ILE+RL +L  L    I  E
Sbjct: 484 --------------------------LIAAFGLSDVQAEDILEIRLRQLARLEGFKIEKE 517

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E      +L SR+ +  +I +E+     +    RRT +         E  +  E
Sbjct: 518 LAELKDERAGLQHLLDSRAAMTKLILKEIQDDAKKYGDDRRTLVEAVAAVAPAEISVPDE 577

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        R+++  G   +G+  +  DF   +    T   ++     G
Sbjct: 578 PVTVIVSKNGWV--------RSRQGHGIDPAGIAYKAGDFGFAVLETRTTWPLIVIDGNG 629

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y  KV  LP G  +  G  +  ++    G ++  ++      +   +    FA   G 
Sbjct: 630 RAYTVKVSELPGG--RGDGAPITTLVEFQDGGKLAQVV------TDTPDSVYFFANSGGY 681

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                ++D     R+GK  M L+  +++L+       + I   ++ G+ + FP   ++  
Sbjct: 682 GFLCSVADASSRQRAGKAFMSLEKGEKVLAPAKVFG-DWIAAASENGRILVFPRPEMKTQ 740

Query: 717 AGRNSVGVRGISLAKGDQV 735
           +     GV  ++L +G+ +
Sbjct: 741 S--GGRGVIVMALDEGEAL 757


>gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2]
 gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2]
          Length = 745

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 252/742 (33%), Positives = 389/742 (52%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M    +      +  I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL  M
Sbjct: 1   MATRTLPPG---DGHIEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++  + + K AR+ G+V+GK+HPHG+ ++YDAL R+AQD++ R  L++GQGNFG+V
Sbjct: 58  RQLRLDPGQGFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD + +D VDFRP YDGS +EP VL A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTEARLTETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E++D  + +ID+P+     L++ + GPDFPTG V++    G+  
Sbjct: 178 GIAVGMATSIPPHNAAELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGS  +R     E+T      +VVTEIPY V K+ ++EKIAEL+ +K++  +AD+
Sbjct: 238 AYATGRGSFRVRARWEKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R   A+V++  L++ T L++   +NM  L   + P+  +L   L
Sbjct: 298 RDESAEDIRLVLEPRARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEAL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V++RR++Y L +   R  VL G  IA  NLDEV+RIIR    P   ++ELM
Sbjct: 358 REWLDHRRDVLLRRSRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEP---KQELM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                          T  L++VQT AIL +RL  L  L   +IR E +
Sbjct: 415 R--------------------------TFELTDVQTEAILNMRLRSLRRLEEMEIRKEHD 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMEDEDCI 533
           +L  E      +++S +     I +E+   +           RRT         ED    
Sbjct: 449 ALSKEQDGLNKLVASEAAQWKSIAKEIRETRKTYGPETAIGRRRTTFAAPPTFHEDAFTE 508

Query: 534 V---REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
               RE + + VS  G++        RA +   +  S +  + +D +   F   T + V+
Sbjct: 509 ALVEREPVTIVVSAKGWI--------RALKGHVQDLSNLQFKGDDSLGHAFFAETTSKVM 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G  Y  +  +LP G  +  G+ +  ++ L Q   I ++  +           ++ 
Sbjct: 561 VFASNGRFYTLEAAKLPGG--RGHGEPVRLMIDLEQEAEIVSVFAY------QPGRKLLL 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+K G        D +   R GK  +  D  D  L+V    + + + +     + + FP+
Sbjct: 613 ASKEGRGFVVGEDDCLANTRKGKQVLVTDPPDAALAVRFV-EGDWVAVIGDNRKLLLFPL 671

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +         GVR     +G
Sbjct: 672 NQVPEMT--RGRGVRFQRYREG 691


>gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
 gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
          Length = 770

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/796 (30%), Positives = 407/796 (51%), Gaps = 74/796 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II      + GI  + +    + SYL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSQEII----INKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP +L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV + C  ++DN   +L  L+E ++GPD+PT A +I  ++ I+
Sbjct: 177 TGIAVGMATDIPPHNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V + E        I++T +P+Q +   +LE+IA  ++ K++  ++D
Sbjct: 237 KMYETGRGSIKMRAVYYEEAGD-----IIITALPHQASGGKVLEQIAAQMQAKKLPMVSD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++   R      + ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR++ VVRR +Y L+K   R H+L GL IA  N+DEV+RIIR+   P+    
Sbjct: 352 MILSEWLIFRKDTVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPK---- 407

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                    +    T  LS++Q  AILEL+L  L  L    I+ 
Sbjct: 408 -------------------------LVLMDTFSLSDIQAEAILELKLRHLAKLEEMKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  E   IL S  RL  +IK+E+L+  +     RR+ I+E      + +++ I
Sbjct: 443 EQDELAKERDELQLILGSDRRLKTLIKKEILAAAEMYGDDRRSPIIERSESKALSEKELI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D         ++   +F  
Sbjct: 503 PSEAVTVVLSEKGWA--------RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFMD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  +      LP  S +++G+ +    S+  GE +  ++   +++        + A+ 
Sbjct: 555 TSGRAFSCDAHLLP--SARSQGEPITGRFSIVSGESVEHVVMGQDEQQ------YLIASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G     K +D I  NR+GK  + L    +I++ +       +  L  +  G+ + FP+ 
Sbjct: 607 AGYGFVGKFADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSDWCLAISNEGRMLMFPLR 666

Query: 712 AIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +          +  I  AK    ++ + +  V+   A+          + A +R ++  
Sbjct: 667 DLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANIK--------VLAGKRGMTLT 718

Query: 769 TEEITSLKNDSSVEGN 784
            +++T  + +    GN
Sbjct: 719 ADDLTHYQGERGRRGN 734



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +   EQ  L  S+ G+G      D    NR+GK   +       +   ++A   V+
Sbjct: 590 EHVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYISLP-----KAAKIIAPQAVH 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D  +D  + +S++G ++  P+ ++    +  KG  I S 
Sbjct: 645 DLSSDWCLAISNEGRMLMFPLRDLPSLGKG-KGNKIISI 682


>gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
 gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
          Length = 757

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 238/749 (31%), Positives = 386/749 (51%), Gaps = 61/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + G    ++    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTQDGAERRALHKFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNLREVAKAAIALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDES+ + 
Sbjct: 243 VRMRAVWKREDGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLNNRPAVKNLLEILSEWLIY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR ++ L+K   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVRRRLQHRLDKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FEISETQAEAILELKLRHLAKLEEMKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   IL+S  ++  ++K+EL +  D     RR+ +   E    + + + +  E + + +
Sbjct: 449 DQLQGILASERKMNTLLKKELQADSDLYGDDRRSPLREREEAKAISESELVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R+ +       G+  +  D         ++  V+F  S G  Y   
Sbjct: 509 SQSGWV--------RSAKGHDIDPGGLSYKAGDSYRAAARGKSNQPVVFVDSTGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++   +D+       ++ A+  G       
Sbjct: 561 PITLP--SARGQGEPLTGKLTPPPGAVMEQVLMEADDQK------LLMASNAGYGFVCTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L    ++++      ++D+LL  T  G+ + FP+  +   +    
Sbjct: 613 SDLVSRNRAGKALLTLPQNAKVMTPLAIHHDDDLLLAITSAGRMLLFPVGDLPQLSKGKG 672

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++  ++L     
Sbjct: 673 NKIISIPSAQAASGEDNLAWLLLLTPQTS 701



 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 14/112 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S  G+G   +  D    NR+GK +     +        +     +D+D 
Sbjct: 591 MEADDQKLLMASNAGYGFVCTFSDLVSRNRAGKALLTLPQNAKVMTPLAIH----HDDDL 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV ++   S+           K  +++S+   + +   D
Sbjct: 647 LLAITSAGRMLLFPVGDLPQLSK----------GKGNKIISIPSAQAASGED 688


>gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
 gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
          Length = 752

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/736 (31%), Positives = 370/736 (50%), Gaps = 62/736 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  +S+ +  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++ +  N KY 
Sbjct: 9   EGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELALSANAKYK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYT
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+ PN+DG+  EPVVL AR P+VL+NGG GIAVGMAT+IP
Sbjct: 129 EARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVI 250
            HN+GEVV+    ++  P+     LM  + GPDFP+ A I+   + ++  Y  GRGS+ +
Sbjct: 189 PHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYENGRGSVKV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +     +V+T +PYQV+ A +LE+IA  ++ K++  +ADLRDES  +    
Sbjct: 249 RARFVREEGN-----VVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHEEPTR 303

Query: 311 VIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++   R      + ++  L+  T L+    VNM  +    +P   +L G+L  ++ FR  
Sbjct: 304 LVIEPRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDGRPRVLSLAGLLSEWLDFRRS 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L K  DR H+L GL  A  N+DEV+RIIR    P+ A              
Sbjct: 364 TVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPA-------------- 409

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AILELRL  L  L    IR E + L  E K  
Sbjct: 410 ---------------LMEAFGLSERQAEAILELRLRHLAKLEEMKIRGEQDELEEERKRL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            ++L + + L  +I++EL +  +E   PRR  IV  E    + + + +  + + V +S  
Sbjct: 455 KELLGNEAALTDLIERELRAAGEEYGDPRRAPIVEREEARALSEVELVGADPVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R+ +      +G+  +  D         T+  ++     G  Y      
Sbjct: 515 GWI--------RSAKGHDIDPAGLSYKAGDRFALAARGKTNQPLVLLDDTGRAYTLTAHN 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +++G+ +   +++  G  +  +M  P           + A+  G      L   
Sbjct: 567 LP--SARSQGEPVTGRVNVAAGAHMAGVMLGP------PTTRYLLASDGGYGFIAPLEAL 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPISAIRVFAGRNSVG 723
              ++SGK  + +     +L+     +   I +   +  G+ + FP+  +   A      
Sbjct: 619 TGKSKSGKGVLSVPKGCNVLAPLMVPEGEGISVAAVSNEGRLLVFPLDQLPEMAKGKGNK 678

Query: 724 ---VRGISLAKGDQVI 736
              + G   A+ ++ +
Sbjct: 679 MIDIPGARAARREEFL 694


>gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
 gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
          Length = 773

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 249/769 (32%), Positives = 383/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                                   LSE Q   I
Sbjct: 421 DEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +
Sbjct: 621 ADQQ------LLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 722


>gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815]
 gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815]
          Length = 773

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/769 (31%), Positives = 380/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFTEPAAPEGDVLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P I    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVAMIRHPKITHAELMQLVPGPDFPGGGQIISSEAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+V+TE+P   +   +LE+I E    K  +    
Sbjct: 241 QAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKS 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES +     ++   + +  D    +N L  +TSL+S  +
Sbjct: 301 LTPEQLQTKQTLLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  +  +L  ++ FR   V RR+++ LNK  +R H+L G  I   N+
Sbjct: 361 LNLVMVGADGRPRQKGIGEMLHEWIGFRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A  E                                LS+ Q   I
Sbjct: 421 DEVIRIIRESEEPKAALIE-----------------------------AFKLSDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I  EL+ L  E  +  ++L S   +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEAIKIEKELSELRDEKAKLEELLGSEPAMKRLLIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEARVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V +LP G  +  G  + +++ L  G  +       
Sbjct: 563 YAAFQCRTPDMLIAWGSKGRVYSVAVSQLPGG--RGDGVPVTSLIELESGTHLMHYYAAS 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            +++      ++ A+ +G     K+ D +   ++GK  M +D     +  +        +
Sbjct: 621 AEQA------LLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGATPLAPMPMLPDATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + +     + +A 
Sbjct: 675 ACLSGGGRLLVFGLDEMKTLSG-GGRGVILMALDPNEVLKQALAISNAG 722


>gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
 gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
          Length = 776

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 259/764 (33%), Positives = 373/764 (48%), Gaps = 76/764 (9%)

Query: 1   MTEHIIS------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+            + +     ++++    + +YL YA++V+ GRA+PD+ DG KPV R
Sbjct: 1   MTDSNQPGLFDSTPPDGDGDANAAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQ
Sbjct: 61  RILFAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS DGD  AA RYTE RL   A  LLD+L + TVDF PNYDGS QEP +L AR P +
Sbjct: 121 GNFGSRDGDNAAAMRYTEARLTPIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVM 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IP HNL EV   CVA+I  P +    L  +I GPDF  G  I+  
Sbjct: 181 LLNGASGIAVGMATEIPPHNLREVAQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITP 240

Query: 235 -TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
              I   Y TGRGS+ +R     E+ +  + Q+V+TE+P   +   +LE+I E+   K  
Sbjct: 241 AADIAQIYGTGRGSLKVRARWTFEEMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVK 300

Query: 294 VDIAD------------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSL 333
                                  +RDES +     ++          D  +N L   TS+
Sbjct: 301 SGKKSLTPEQTQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSM 360

Query: 334 QSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +S  S+N+V +    +P +  L  IL  +VAFR   VVRRT++ L+K  DR HVL G  +
Sbjct: 361 ESSSSINLVCIGTDGRPRQKGLRDILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRML 420

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
              N+DEV++ IR S  P  A   LM+R                            LSE 
Sbjct: 421 VYLNVDEVIQTIRESDEPRAA---LMER--------------------------FKLSER 451

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q   ILE+RL +L  L    I  EL     +     ++L + + L  ++ +E+ +   + 
Sbjct: 452 QAEDILEMRLRQLARLEGFKIEQELADKRKDQISLQELLDNPTTLKRLLIKEIEADAKQY 511

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I      + +   +  E + V VS  G++        RA++  G   S    +
Sbjct: 512 GDERRTLIETAERAVLETKVL-DEPVTVIVSQKGWL--------RARQGHGHDASQFTFK 562

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +   F   T  +++     G VY   V  LP  S +  G+ +  ++ L  G RI  
Sbjct: 563 QGDDLYGAFECRTTDTLIAMGDNGRVYSVPVGGLP--SARGDGQPVTTMIDLESGTRIVH 620

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCT 691
            +     ES W     + AT+ G     KLSD +   R+GK  + L++ DE+L  V    
Sbjct: 621 TIAAAP-ESRW-----LLATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFE 674

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
               + L +  G+ + F +   +  +G    G   + L   D++
Sbjct: 675 GATHLALLSAKGKFLVFGLDECKSLSG-GGRGTILMGLDASDKL 717


>gi|291523172|emb|CBK81465.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus catus GD/7]
          Length = 745

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 255/731 (34%), Positives = 397/731 (54%), Gaps = 29/731 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++ + ++K Y 
Sbjct: 2   QEQIIRTDYAEVMQKSYVDYAMSVIISRALPDIRDGLKPVQRRTLYDMYELAIRYDKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IYDAL  MAQ++   + L++G GNFGS++GD  AA RYTE
Sbjct: 62  KCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMPLVDGHGNFGSIEGDGAAAMRYTE 121

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RLQK      L DL KD VDF PN+D + +EP VL  R PN LVNG  GIAVGM T+ P
Sbjct: 122 ARLQKVTQEVFLADLDKDVVDFMPNFDETEKEPTVLPVRLPNFLVNGSDGIAVGMVTSTP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D   A + N  +    LM+ I+GPDFPTG ++  +  + N Y TG G I +R
Sbjct: 182 PHNLGEVIDAVKAYMKNDKLTTADLMQYIQGPDFPTGGIVTNKDELLNIYETGSGKIKLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G   +E+  G + ++V+TEIPY +   N    L  +  LV  K+  DI D+ ++S ++G 
Sbjct: 242 GRVEVEQDKGGKLRLVITEIPYTMIGANIGKFLNDVYALVESKKTTDIIDISNQSSKEGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+    D +L  LY+ T L+  FSVNM+A+   +PE   L  I++ F+ F+ ++
Sbjct: 302 RIVLELKKQTDVDNLLALLYKKTRLEDTFSVNMLAIADGRPETLGLKSIIEYFLDFQYDL 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ + LL K  ++  +  GL  A   +D ++ I+R S N + A+  LM  +      K
Sbjct: 362 TTRKYQKLLAKELEKQEIQEGLMRATDIIDLIIEILRGSKNIKQAKACLMTGTTEGIRFK 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   S  +  +   +  +E Q  AILE+RL +L GL  D +  + ++    I    
Sbjct: 422 --------SKASERAASALDFTERQATAILEMRLYKLIGLEMDALLKDHDATLKNIASYK 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +   +  +I  +L  +K    TPR+T I      + +E      ++V  +   GY 
Sbjct: 474 DILENHKSMSRVISHDLDMIKKTYATPRKTSIENVRAAVYEEKKAEAMEVVALIDRFGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  + +   +          + +  +V D            F+  G ++  K+  +P 
Sbjct: 534 KTIDKATFERNKEAA-------LSENKYVID---CMNTDKACIFTDTGRLHLIKITDMPF 583

Query: 609 GSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  + +   L N+ + +  GE I  I       +S ++  ++F TK G ++  K S+F  
Sbjct: 584 GRFRDKSIPLDNLGNYDSSGENIIHICSL----ASIHDAMLLFVTKTGMLKLVKGSEFD- 638

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +++    A KL   D I+++      N ++L T+ G  +RFP+  I     + ++GVRGI
Sbjct: 639 VSKRTVAATKLADGDNIITICIADNFNQLVLQTENGYFIRFPMMNIPEM-KKTAIGVRGI 697

Query: 728 SLAKGDQVISM 738
           SL  GD V + 
Sbjct: 698 SLGSGDSVKAA 708



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            +  +L++   VI       A    D    ++  ++        D         +    G
Sbjct: 544 NKEAALSENKYVIDCMNTDKACIFTDTGRLHLIKITDMPFGRFRDKSIPLDNLGNYDSSG 603

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                 C    + +  +L V++ G  K     +F +S R          +K+ +   ++ 
Sbjct: 604 ENIIHICSLASIHDAMLLFVTKTGMLKLVKGSEFDVSKR------TVAATKLADGDNIIT 657

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +   ++ +Q++L ++ G  IR P+  I    +   GV   S    + V
Sbjct: 658 ICIADNFNQLVLQTENGYFIRFPMMNIPEMKKTAIGVRGISLGSGDSV 705


>gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
 gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
          Length = 747

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/746 (32%), Positives = 366/746 (49%), Gaps = 62/746 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +    +  + +  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+    KY
Sbjct: 4   HDADYETQPLREFTEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RY
Sbjct: 64  KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADEPKSFAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LL +LG+ TV++ PN+DG+ +EP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 124 TEARLTRYAQLLLTELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIV 249
           P HNL EVV  C+ ++D PD  +  L E I GPDFPT A I+     I+  Y  G G + 
Sbjct: 184 PPHNLREVVAACIHLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLR 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            R          D   IV+T +PYQV+ + +LE+IA  ++ K++  + DLRDESD     
Sbjct: 244 QRACWE-----RDGLDIVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPT 298

Query: 310 VVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
            +I   R     A+ ++  L+  T L+  + VN+  +    +P    L  IL  ++ FR 
Sbjct: 299 RLIITPRSARVDAEPLMQHLFATTDLEKTYRVNLNVIGLDARPRVRNLREILTEWLRFRT 358

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR ++ L+K   R H+L G  IA  N+DEV+ IIR    P+     LM+R      
Sbjct: 359 ETVCRRLQWRLDKVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPKLV---LMER------ 409

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q  AILELRL  L  L    I  E + L  E   
Sbjct: 410 --------------------FGLTERQAEAILELRLRHLAKLEEIKIHAEQDELLRERDR 449

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              IL+S +RL  +IK EL     +   PR + +V+      + D + +  E + + +S 
Sbjct: 450 LRSILNSEARLKALIKSELQEDAQKYGDPRCSPLVQRGSARALSDTELVPSEPVTLVLSQ 509

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+++        AQR           +  D   D  I  T+   +F  S G  Y     
Sbjct: 510 RGWIRAAKGHDVDAQRLS--------YKAGDGYRDAAIGRTNQQAVFLDSQGRAYSLPAH 561

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   LSL  G   + ++          +   + A+ HG     +L +
Sbjct: 562 TLP--SARGQGEPLTGRLSLPGGGEFSYVL------LGDPDSLWLLASDHGYGFITRLGN 613

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               NR+GK  + +    + L         ++ ++  T  G+ + FP+  +         
Sbjct: 614 LYSKNRAGKAVLSVAGGAQPLKPARIYALAQDRLVAATTAGRLLVFPLQELPELGKGKGN 673

Query: 723 GVRGI---SLAKGDQVISMAIVLHAD 745
            +  I    L   ++V++  + +   
Sbjct: 674 KLIQIPSPRLKTREEVVAGVLAVPPG 699



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E     L   +   L  S+ G+G  T   +    NR+GK + +          A +   
Sbjct: 583 GEFSYVLLGDPDSLWLLASDHGYGFITRLGNLYSKNRAGKAVLSVAGGAQPLKPARIYAL 642

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF-----STAKDERVVS 893
                D+++  +  G L+  P+ E+    +  KG  +           E VV+
Sbjct: 643 A---QDRLVAATTAGRLLVFPLQELPELGKG-KGNKLIQIPSPRLKTREEVVA 691


>gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999]
          Length = 788

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/746 (30%), Positives = 384/746 (51%), Gaps = 63/746 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            + G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M  +G+  N KY
Sbjct: 8   NQDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLGLSANAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ ++ R  L++GQGN+G+ D     AA RY
Sbjct: 68  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPKSFAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL +LG+ T D+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+I
Sbjct: 128 TEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIAVGMATDI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+ E+ + C  ++DN   +L  L+E ++GPD+PT A +I  +  I+  Y TGRGSI 
Sbjct: 188 PPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYETGRGSIK 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V   E       ++++T +P+Q +   +LE+IA  ++ K++  ++DLRDESD +   
Sbjct: 248 MRAVYTEENG-----EVIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDESDHENPT 302

Query: 310 VVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
            ++   R      + ++  L+  T L+  + VN+  +    +P+   L  IL  ++ FR 
Sbjct: 303 RLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDGRPQVKDLKSILSEWLVFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   ++ELM R      
Sbjct: 363 DTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEP---KQELMAR------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AILEL+L  L  L    I+ E + L  E   
Sbjct: 414 --------------------FGLSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERDA 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S  R+  +IK+EL++  ++    RR+ IV+      + +++ +  E + V +S 
Sbjct: 454 LQLTLGSDRRMKTLIKKELMADAEKYGDDRRSPIVQRGESKALSEKELVPSEPVTVVISA 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ +        A     KG        +D         ++   +FF S G  +     
Sbjct: 514 KGWARCAKGHDVDAPNLSYKG--------DDSYLASAKGRSNQPAVFFDSSGRTFSCDAH 565

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S +++G+ L    ++  GE+   ++   E +        + A+  G       +D
Sbjct: 566 TLP--SARSQGEPLTGRFNMVSGEQFEHVIMANESQK------FLMASDAGYGFVGSFAD 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +  N++GK  + L S  ++L+       + +  L  +  G+ + FP+  +         
Sbjct: 618 MLSKNKAGKAYLSLPSAAKVLTPVLVNDIETDRCLAISNEGRMLLFPLRDLPSLGKGKGN 677

Query: 723 GVRGISLAK----GDQVISMAIVLHA 744
            +  I  AK     + ++++AIV + 
Sbjct: 678 KIINIPSAKAKTREEFIVALAIVPNG 703



 Score = 41.1 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +  + Q  L  S+ G+G   S  D    N++GK   +   +       LV   
Sbjct: 587 EQFEHVIMANESQKFLMASDAGYGFVGSFADMLSKNKAGKAYLSLPSAAKVLTPVLVNDI 646

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIR 898
              + D+ + +S++G ++  P+ ++    +  KG  I +        ++E +V++  + 
Sbjct: 647 ---ETDRCLAISNEGRMLLFPLRDLPSLGKG-KGNKIINIPSAKAKTREEFIVALAIVP 701


>gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
 gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
          Length = 749

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/797 (30%), Positives = 395/797 (49%), Gaps = 69/797 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++ GI  +S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY
Sbjct: 8   DDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKSTAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ++S R  L++GQGN+G+ D     AA RY
Sbjct: 68  KKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAPDDPKSFAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL +LG+ TVD+ PN+DG+  EP +L A+ PN+L+NG  GIAVGMAT+I
Sbjct: 128 TESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNGTTGIAVGMATDI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HNL EVV   + ++D P   L  L EII+GPDFPT A +I     I   YATGRGS+ 
Sbjct: 188 PPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDIAQIYATGRGSLR 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V  +E        IVV+ +P+Q + + +LE+IA+ ++ K++  +ADLRDESD +   
Sbjct: 248 MRAVWELEHGD-----IVVSALPHQASGSRVLEQIAQQMQAKKLPMVADLRDESDHENPT 302

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFRE 366
             V++        + +++ L+  T L+  + VN+  +    +P   +L GIL  ++ FR 
Sbjct: 303 RLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDGRPGVRSLDGILNQWLKFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR  Y L +   R H+L G  +A  N+DEV+ IIR   +P+ A   LMQR      
Sbjct: 363 DTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQA---LMQR------ 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +S+VQ  AILEL+L  L  L    IR E + L  E + 
Sbjct: 414 --------------------FEISDVQAEAILELKLRNLAKLEEMKIRGEQDELEKEREW 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
               L S +RL  +IK+EL ++ ++    RR+ +   E      + + +  + + V +S 
Sbjct: 454 LEKTLGSDARLKTLIKKELTAIAEKYGDDRRSPLASREEARAFSELELMTADPITVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +      + +  +  D         ++   +   S G  Y     
Sbjct: 514 KGWI--------RAAKGHDMDPATLSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATH 565

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L   ++   G     +M         N    + A+  G      L++
Sbjct: 566 NLP--SARGQGEPLTGRINPPSGAGFDGLMM------GDNEQRCLLASDAGYGFVTTLAE 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               NR+GK A+ L +  +++S     +    +   +  G+ + FP++ +   +      
Sbjct: 618 LQTKNRAGKAALSLPAGAKVVSPVPINEGAQWVAAVSNEGRLLLFPLADLPSLSRGKGNK 677

Query: 724 VRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           +  I        ++ +    VL  D            + A +R ++    E+   + +  
Sbjct: 678 IIAIPGPRARDREEYVVATAVLKDDDGL--------TVWAGKRHLTLKRAELDHYRGERG 729

Query: 781 VEGNISEERCQELKLKE 797
             GN      Q ++  +
Sbjct: 730 RRGNKLPRGFQRVERMD 746



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 13/116 (11%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQ  L  S+ G+G  T+  + +  NR+GK   +           +V+  P+N+  Q
Sbjct: 594 MGDNEQRCLLASDAGYGFVTTLAELQTKNRAGKAALSLP-----AGAKVVSPVPINEGAQ 648

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
            +  VS++G L+  P+ ++   SR  KG  I +        ++E VV+   +++ +
Sbjct: 649 WVAAVSNEGRLLLFPLADLPSLSRG-KGNKIIAIPGPRARDREEYVVATAVLKDDD 703


>gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum]
          Length = 758

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 251/802 (31%), Positives = 409/802 (50%), Gaps = 70/802 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITFDGVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ E+ D  + +IDNP+  L  +M+ ++GPD+PT A I+  R  I+  Y +GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D++++ L+  T L+  F VN+  +    +PE   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNNRPEVKGLVTILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+     LM R  
Sbjct: 357 EFRRTTVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +S +Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGISAIQADAILDTKLRHLAKLEEMKIRGEQDELAK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ ++E      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLIERAESKALTERDLVPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +        +  +  D         ++  V+F  S G  Y 
Sbjct: 508 VLSEKGWV--------RHAKGHDVDCQSLSYKSGDQYLAHACGKSNQQVVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LEAHSLP--SARTQGEPITGRLNITEGSSIRQVV-MGEEEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  + +  NRSGK  + L    E+++ +     + +DIL  T  G+ + FPI  +     
Sbjct: 612 KGGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDILAITNQGRMLLFPIKDLPQLTK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++ +S  I L   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKSKEREEFVSHLISLPQGA--------AITLYAGKRKLGLKASDLENF 723

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G++     Q +   E
Sbjct: 724 RGERGRRGSLLPRGLQRVTAIE 745



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 19/190 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     + +S   GDQ ++ A                 +      L S  T+    
Sbjct: 516 RHAKGHDVDCQSLSYKSGDQYLAHACGKSNQQVVFLGSDGRSYSLEAHSLPSARTQGEPI 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG  S  R   +  +EQ  L  S+ G+G      +    NRSGK +       
Sbjct: 576 TGRLNITEG--SSIRQVVMGEEEQLWLVGSDAGYGFVCKGGELLSKNRSGKALVNL---P 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N            ++D I+ ++++G ++  P+ ++      TKG       K  +++++
Sbjct: 631 ENSEVMTPQASVNLESDDILAITNQGRMLLFPIKDLPQL---TKG-------KGNKIINI 680

Query: 895 ERIRESEIVD 904
              +  E  +
Sbjct: 681 PAAKSKEREE 690


>gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
 gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
          Length = 757

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/748 (32%), Positives = 389/748 (52%), Gaps = 61/748 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TV+F+PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HNL EV    +A+ID P   L+AL++I++GPD+PT A +I  R  I+  Y TGRGS
Sbjct: 183 DIPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I  R V   E+      + V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 IRQRAVWKKEEG-----EAVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  I+N L+  T L+  + VN+  +    +P    L  IL  ++ F
Sbjct: 298 PTRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPKPV---LMSR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  +ILEL+L  L  L    IR E   L  E 
Sbjct: 411 ----------------------FGISETQAESILELKLRHLAKLEEVKIRAEQADLEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +    L+S  ++  ++K+EL +        RR+ +   E    + + + +  E + + +
Sbjct: 449 DQLQATLASERKMNTLLKKELQADSASYGDDRRSPLREREEAKALSETELVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y   
Sbjct: 509 SQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+ L   L+   G  +  ++  P+D+       ++ A+  G       
Sbjct: 561 PTSLP--SARGQGEPLTGKLTPPPGAVVEQVLMEPDDQR------LLMASDAGYGFICTF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           SD +  NR+GK  + L     +++      +++ +L  T+ G+ + FP+  +   +    
Sbjct: 613 SDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSKGKG 672

Query: 722 VGVRGISLAK---GDQVISMAIVLHADA 746
             +  I  A+   G   ++  ++L   +
Sbjct: 673 NKIISIPSAEAAAGQDKLAWLMILPPGS 700



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 92/282 (32%), Gaps = 20/282 (7%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK-LD 679
           +  L + E +       + E   + L    A++       K          G      L 
Sbjct: 426 LRHLAKLEEVKIRAEQADLEKERDQLQATLASERKMNTLLKKELQADSASYGDDRRSPLR 485

Query: 680 SRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            R+E   +   E    E   ++ +++G         I         G   ++ A+G    
Sbjct: 486 EREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAGDSYLAAARGKSNQ 545

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +A +      Y      +     Q   ++G          +  +           ++  
Sbjct: 546 PVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVL-----------MEPD 594

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q +L  S+ G+G   +  D    NR+GK + A   +        V     +++D ++ +
Sbjct: 595 DQRLLMASDAGYGFICTFSDLVSRNRAGKALLALPENARVMTPMAVH----HEDDMLLAI 650

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  G ++  PV E+   S+  KG  I S    E     +++ 
Sbjct: 651 TQAGRMLMFPVGELPQMSKG-KGNKIISIPSAEAAAGQDKLA 691


>gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
          Length = 766

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 300/876 (34%), Positives = 446/876 (50%), Gaps = 129/876 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + SYL YA++VI+GRAIPD+RDGLKPV RRIL+ M +M +  +K + KCARI G+ MG+Y
Sbjct: 13  RQSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRY 72

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ AIYDAL RMAQD++LR  L+ GQGNFGS+DGDPPAA RYTE +L K    LL+D
Sbjct: 73  HPHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLED 132

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +  DTVDF PN+D S  EP VL A+ PN+L NG  GIAVG+AT+IP HNL EV D  VA+
Sbjct: 133 IENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVAL 192

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
             N DI ++ LM+ I+GPDFPTG +I+G       Y TGRG + ++  + +EKTS  REQ
Sbjct: 193 AQNQDITVEELMQYIKGPDFPTGGIIVGEVS-PEVYKTGRGQVTVQAKARVEKTSSGREQ 251

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I++TEIPY VNKA +++KIAEL R  ++ +I+DLRDESD++G R+VIELKR A  + +L 
Sbjct: 252 IIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELKRDAKGEAVLK 311

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +LY+ TSL+  F +NMVAL G +P+   L  IL  F   R  V+ RRT++ L KA +R H
Sbjct: 312 KLYKNTSLRKNFPINMVALVGLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEERLH 371

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           ++ GL I + ++D+++  IR S + + A+ +LM   WN                      
Sbjct: 372 IVEGLLICIKDIDKIIETIRASQDTQEAKEKLMS-GWN---------------------- 408

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+E Q +AIL+LRL RLT L    ++ E + L   IK   +IL ++   + I  +E 
Sbjct: 409 ---LTEKQAQAILDLRLQRLTSLETSKLQKEHDELIENIKTYKNILENKQERINIFIKET 465

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             + D    PRRT I        +        + V V+  G+VK + L            
Sbjct: 466 KELADRFKDPRRTFI--------EGMIKEDTYVDVFVTRNGFVKPIELLEEEKS------ 511

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
                      + ++  +     +   S+ G VY         GS         +I   +
Sbjct: 512 ----------PIVNVASLKFTEGLFIVSNKGRVYWTAGSEALSGS---------SIHMKD 552

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             E +              N  ++  T  G++++  L +F    + G   +KL   +E++
Sbjct: 553 TDEHVVGAFV-----REQYNSRLLILTNKGSIKKIPLVEFEYKTQ-GFQILKLSEGEEVV 606

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +     E++IL+ TK G   R     +      +S  ++ I L + D+ IS+  +    
Sbjct: 607 YISGSQDESEILILTKKGYINRIQTQDVGATTS-SSKAIQCIKLNENDEAISVRAL---- 661

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                          +D      I+EE                 
Sbjct: 662 -------------------------------DDKIFGLLITEE----------------- 673

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ K+    D    +R+ +GI       +N    +   +  +DN  +++ +  G+ I+ 
Sbjct: 674 -GYAKKIKLEDIPKKSRTSQGINVLKQKFLNACDLI--FYNDDDNFDVLISTFNGSHIKF 730

Query: 866 PVNEI--RIASRATKGV---VIFSTAKDE--RVVSV 894
            +  +  RI   A  GV    +     D+  +VVS+
Sbjct: 731 DIKSLIQRIKVPAGIGVPEEKVIDLKDDKIYKVVSL 766


>gi|162950918|gb|ABY21498.1| ParC [Shigella boydii]
          Length = 657

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/702 (33%), Positives = 367/702 (52%), Gaps = 58/702 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 VSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPI 710
           R+GK  + L     ++         + +L  T+ G+ + FP+
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657


>gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 525

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 263/520 (50%), Positives = 350/520 (67%), Gaps = 9/520 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA +VI+GRA+PD+RDGLKPVHRR+L+    +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + R AQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L  DL K+TVDF  NYDG+ + P V   + PN+LVNG  GIAVG ATNIP H
Sbjct: 126 RLAKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ L E I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +N VAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINXVALHHGQPKIXNLKDIIAAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++   ++
Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
            E L IL S  RL  +I++EL  V+++    RRT I    
Sbjct: 486 AELLRILGSADRLXEVIREELELVREQFGDKRRTEITANS 525


>gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
 gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
          Length = 758

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/809 (30%), Positives = 403/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A +I     I 
Sbjct: 177 TGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+  R V  +E       +I++T +P+Q +   +LE+IA  ++ K++  +AD
Sbjct: 237 KIYESGRGSLRARAVYTVESG-----EIIITALPHQASSGKILEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        D ++  L+  T L+  F VN+  L    +P    L 
Sbjct: 292 LRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + 
Sbjct: 352 TLLTEWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEP---KV 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L++ Q  AILEL+L  L  L    I  
Sbjct: 409 ELMAR--------------------------FSLTDKQAEAILELKLRHLAKLEEFKITA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV+      + +++  
Sbjct: 443 EQNELEAEREKLEQLLGSERRLKTLIKKELIQDAETYGDNRRSPIVQRHESRALTEQELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D      +  ++ + +F  
Sbjct: 503 PSEPVTVVLSEKGWV--------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    ++  GE +  ++   E++        + AT 
Sbjct: 555 SSGRAFATDSHTLP--SARSQGEPITTRFNMAPGETMQHVIMGEEEQ------CYLLATD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G       +D +  N++GK  + L +  + L+ +     +E  +L  T  G+ + F ++
Sbjct: 607 AGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLA 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +      + GI        D++++   ++ +D            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri]
          Length = 657

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 234/702 (33%), Positives = 367/702 (52%), Gaps = 58/702 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V R
Sbjct: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R           
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL
Sbjct: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V 
Sbjct: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPI 710
           R+GK  + L     ++         + +L  T+ G+ + FP+
Sbjct: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657


>gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 785

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 264/759 (34%), Positives = 412/759 (54%), Gaps = 58/759 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   +   +E   I  VS++DE +  YL YA +VI  RA+PD+RDGLKPV RRIL+ M  
Sbjct: 6   DADTNGQRDETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVMYH 65

Query: 63  -MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            + +  + K  KCA+I+G+  G YHPHG+A++YDAL R+AQD++LR  LI+GQGNFGS+ 
Sbjct: 66  DLRLTADSKPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGSII 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G PPAA RYTE +L   A  L+ +L   TV+ R NYDG  QEPVVL +R+P++LVNG  G
Sbjct: 126 GLPPAAARYTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGTQG 185

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNA 240
           IAVGMAT+IP HNL EVV  C+ +IDNPD  +  LM+ ++ PDFP G  I+  R  ++N 
Sbjct: 186 IAVGMATSIPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELRNT 245

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRGSI +RG    +K      R ++V+T IPY V    ++  +  +   K++  +  
Sbjct: 246 YETGRGSIKVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQLVT 305

Query: 299 LRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-----PERF 352
           + DES+ + G R+V+E+K    A+ ++  LY++T+L+  F+ N   L   +     P + 
Sbjct: 306 VADESNEELGMRLVLEVKHENDAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPAQC 365

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L+ F+ FR EVV +R ++LL +   R H+L G  I  + LD+ +R+IR S     
Sbjct: 366 NLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGKAD 425

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A ++LM+                             L E+QT AILE+ L R++ L  D 
Sbjct: 426 AAQKLMK--------------------------AFPLDEIQTDAILEMALYRISELEIDR 459

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDE 530
           I  EL     E +    +L+S +++  +I  EL  +       RRT +   E + + +  
Sbjct: 460 IIEELKEKRAEAERLRKLLASETKMWRLIADELGELGKTYGNKRRTGLGSSEEIAEFDPS 519

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             IV+E+  V ++  G++KRV     R Q         + +R+ D V ++   ST   ++
Sbjct: 520 AYIVKENTNVVLTSDGWIKRVG----RIQS-----VDKMRVREGDTVINVLPASTLDQIV 570

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-----FPEDESSWNN 645
           FF+  G  Y   + ++P  S    G+ L   + L  G +I   +       PED+S   +
Sbjct: 571 FFADDGTAYTLPIDQIPASS--GYGEPLAKHIKLADGAKIVHGITTDPRFTPEDDSDEES 628

Query: 646 --LYVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
              Y++ AT+ G V     S F     + G+   +L   D+++ V+   +   + L T+ 
Sbjct: 629 PLPYLLIATEMGQVMAISFSSFRPPSTKVGRKYCRLAKGDKVVFVDLIREHYTMFLATEQ 688

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            + + F ++ + + AG    GV+GI LA+GD V+   ++
Sbjct: 689 ARVIHFELAEVPLLAGPG-RGVKGIKLAEGDSVLGGVLL 726



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 91/283 (32%), Gaps = 35/283 (12%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD----FIQINRSGKIAMKLDSRDE 683
           +RI   +     E+      +   TK   +  ++L +    +    R+G      +   E
Sbjct: 458 DRIIEELKEKRAEAERLRKLLASETKMWRLIADELGELGKTYGNKRRTGL--GSSEEIAE 515

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                   +EN  ++ T  G   R                V  + + +GD VI++     
Sbjct: 516 FDPSAYIVKENTNVVLTSDGWIKRVG----------RIQSVDKMRVREGDTVINVLPAST 565

Query: 744 ADA---DYDERICYM--------KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            D      D+   Y              +         +   + +  + +   + E   +
Sbjct: 566 LDQIVFFADDGTAYTLPIDQIPASSGYGEPLAKHIKLADGAKIVHGITTDPRFTPEDDSD 625

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRI--SNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +    ++L  +E G     S   FR   +    K  R     K      +V V  + ++
Sbjct: 626 EESPLPYLLIATEMGQVMAISFSSFRPPSTKVGRKYCRLAKGDK------VVFVDLIREH 679

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             + L +++  +I   + E+ + +   +GV     A+ + V+ 
Sbjct: 680 YTMFLATEQARVIHFELAEVPLLAGPGRGVKGIKLAEGDSVLG 722



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/437 (12%), Positives = 131/437 (29%), Gaps = 47/437 (10%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +  L+  L        + +R  L  L  ++++ + IL     +   + + L  +     
Sbjct: 363 AQCNLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLI----- 417

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R ++          +   + E     +  +   +   L + R               +
Sbjct: 418 --RSSKGKADAAQKLMKAFPLDEIQTDAILEMALYRISELEIDRIIEE-----LKEKRAE 470

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            + +  L    T    L    LG + K    +         G            E I   
Sbjct: 471 AERLRKLLASETKMWRLIADELGELGKTYGNK----RRTGLG----------SSEEIAE- 515

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
             F            V  T  G ++R                M++   D +++V   +  
Sbjct: 516 --FDPSAYIVKENTNVVLTSDGWIKRVG-------RIQSVDKMRVREGDTVINVLPASTL 566

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-----IVLHADADY 748
           + I+     G     PI  I   +G      + I LA G +++             D+D 
Sbjct: 567 DQIVFFADDGTAYTLPIDQIPASSGYGEPLAKHIKLADGAKIVHGITTDPRFTPEDDSDE 626

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI----SEERCQELKLKEQFILTVS 804
           +  + Y+   +   ++++               +        +    +L  +   +   +
Sbjct: 627 ESPLPYLLIATEMGQVMAISFSSFRPPSTKVGRKYCRLAKGDKVVFVDLIREHYTMFLAT 686

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E+         +  +    G+G++   +++ + +  L  V     +D + +V++ G  + 
Sbjct: 687 EQARVIHFELAEVPLLAGPGRGVKGIKLAEGDSV--LGGVLLGRPSDTLRVVNENGKQLA 744

Query: 865 VPVNEIRIASRATKGVV 881
               +  + SR  KGV 
Sbjct: 745 FGQAKYGVTSRGGKGVK 761


>gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15]
          Length = 781

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 252/763 (33%), Positives = 371/763 (48%), Gaps = 77/763 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPREPA--EALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP ++ AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + I GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 299 -----------------LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++   +  +       N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LS+ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQAELDVLLKSETMMRRRIVKEIETDAKQFGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   +V E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +       S     V+ +T+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LA------SHAEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
                  +  G+ + FP+S ++  A     GV  + L K + +
Sbjct: 673 AYGAACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETL 714


>gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 764

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/757 (31%), Positives = 384/757 (50%), Gaps = 66/757 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EPVVL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV   CV ++DNP+  LDALM  ++GPD+PT A +I  R  I+
Sbjct: 177 TGIAVGMATDIPPHNAREVAHACVELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GSI  R V + E        IV+T +P+Q + A ++E+IA  +  K++  + D
Sbjct: 237 KIYETGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        + ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +++FR E V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P     
Sbjct: 352 TILTEWLSFRRETVRRRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEEEP----- 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            +SE Q  AILEL+L  L  L    +R 
Sbjct: 407 ------------------------GRVMMERFNISEAQAEAILELKLRHLAKLEEFKLRA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E N L  E  +   IL S  RL  ++K+E+L+  ++    RRT +VE    + + +++  
Sbjct: 443 EQNELAEERDKLELILGSERRLSTLLKKEILADAEKYGDDRRTPLVERATAVALTEKELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +       G+  +  D         ++   +F S
Sbjct: 503 PSEPVTVILSDKGWV--------RAAKGHDVDVEGLSYKAGDNYLAHAHGRSNQQAVFLS 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  Y  +   LP  S +++G+ L    +L  GE +  ++   E E        +  + 
Sbjct: 555 TLGRTYSLEAHTLP--SARSQGEPLTGRFALGAGEEVRHLVMGNEGEP------YLICSD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D I  N++GK  + +     +++ +       +  +  +  G+ + FP++
Sbjct: 607 AGYGFVCKYDDLIGKNKNGKALLTVPEGGLVMAPQKIGAPDTDLCMAISNEGRMLLFPLN 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            + V        +  I    +   ++ + MA V+   
Sbjct: 667 TLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQG 703



 Score = 41.4 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD  ++ A                 +      L S  ++    
Sbjct: 518 RAAKGHDVDVEGLSYKAGDNYLAHAHGRSNQQAVFLSTLGRTYSLEAHTLPSARSQG--E 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E R   +  + +  L  S+ G+G      D    N++GK +       
Sbjct: 576 PLTGRFALGAGEEVRHLVMGNEGEPYLICSDAGYGFVCKYDDLIGKNKNGKALLTV---- 631

Query: 835 INEIGALVAV---FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------ 885
               G LV         D D  + +S++G ++  P+N + +  +  KG  + S       
Sbjct: 632 --PEGGLVMAPQKIGAPDTDLCMAISNEGRMLLFPLNTLPVLGKG-KGNKLISIPSARVK 688

Query: 886 AKDERVVSVERIR 898
           A++E VV    I 
Sbjct: 689 AREEFVVMAAVIP 701


>gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
 gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
          Length = 758

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/809 (30%), Positives = 401/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A +I     I 
Sbjct: 177 TGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+  R V  +E       +I++T +P+Q +   +LE+IA  ++ K++  +AD
Sbjct: 237 KIYESGRGSLRARAVYTVESG-----EIIITALPHQASSGKILEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        D ++  L+  T L+  F VN+  L    +P    L 
Sbjct: 292 LRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + 
Sbjct: 352 TLLTEWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEP---KV 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L++ Q  AILEL+L  L  L    I  
Sbjct: 409 ELMAR--------------------------FSLTDKQAEAILELKLRHLAKLEEFKITA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV+      + +++  
Sbjct: 443 EQNELEAEREKLEQLLGSERRLKTLIKKELIQDAETYGDNRRSPIVQRHESRALTEQELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D      +  ++ + +F  
Sbjct: 503 PSEPVTVVLSEKGWV--------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    ++  GE +  ++   E++        + AT 
Sbjct: 555 SSGRAFATDSHTLP--SARSQGEPITTRFNMAPGETMQHVIMGEEEQ------CYLLATD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G       +D +  N++GK  + L +  + L  +     +E  +L  T  G+ + F + 
Sbjct: 607 AGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREMSLLAITNEGRMLLFSLE 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +      + GI        D++++   ++ +D            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 773

 Score =  504 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 241/750 (32%), Positives = 377/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL+YA++V+  RA+PD+ DG KPV RRIL+ M +MG+  + K VK AR+ 
Sbjct: 20  LTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 SKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +    LM +I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 200 AAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIAAAYESGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K  +                      +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDES ++    ++   +  + D    +N L  YTSL+S  ++N+V +    +P +  L+ 
Sbjct: 320 RDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLLA 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  + RR ++ L K  DR H+L G  I   N+D+V+RIIR S  P+ A   
Sbjct: 380 ILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDDVIRIIRESDEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                        T  L++ Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISTFGLTDRQAEDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L++L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LDALRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGDDRRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T   ++ + S G
Sbjct: 531 VT-VVVSQRGWV--------RALKGHGLDPAAFSFKAGDSLYAAFQCRTPDRLIAWGSSG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D+       ++ A+ +G 
Sbjct: 582 RVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAAADQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     +  +        +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLPNATQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVTLMALDDKETLVQALAIEPAG 722



 Score = 39.5 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QI 853
             +Q +L  S  GFG      D     ++GK          +E    +A  PV  N  Q+
Sbjct: 620 AADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTI-----DEGAVPLAPMPVLPNATQV 674

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             +S  G L+   ++E++  S   +GV + +    E +V    I  + +V
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSGGGRGVTLMALDDKETLVQALAIEPAGVV 724


>gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
 gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
          Length = 774

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 248/750 (33%), Positives = 374/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF  NYDG F EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +    LM+ I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           + +  + Q+V+TE+P       +LE+I E    K  +                      +
Sbjct: 261 ELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAV 320

Query: 300 RDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +     ++   + +  D    +N L  +TSL+S  S+N+V + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 --------------------------LMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E     ++L S S +  ++ +E+     +    RRT I +      +   +   
Sbjct: 472 LAELKDEKARLEELLGSESAMKRLLIKEIEGDAKQYGDERRTLIQQEKRATFEARVVDEP 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 532 VT-VVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D++      ++ A+ +G 
Sbjct: 583 RVYSVAVAMLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+  + +  +        I   +  G+ + F +  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMKT 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    + +A 
Sbjct: 695 LSG-GGRGVTLMALDDEETLVQALSINNAG 723



 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 6/179 (3%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G +   GD + +       D           +  A   L  G  + +          G+
Sbjct: 553 AGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGS 612

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L  S  GFG      D     ++GK     D         L  +
Sbjct: 613 HLMHYYAA--SADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAQ----PLAPM 666

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             + D   I  +S  G L+   ++E++  S   +GV + +   +E +V    I  + +V
Sbjct: 667 PMLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMALDDEETLVQALSINNAGVV 725


>gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1]
 gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1]
          Length = 774

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 245/751 (32%), Positives = 370/751 (49%), Gaps = 70/751 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G   +++    +++YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK
Sbjct: 17  EGGDVLTLGHYAESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVK 76

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE 
Sbjct: 77  SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+H
Sbjct: 137 RLTPIAQLLLDEIDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRG 252
           NL E+    VA+I NP +    LM+I+ GPDFP G  I+     I  AY TGRGS+ +R 
Sbjct: 197 NLREIAAAAVALIRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRA 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD-------------- 298
              IE  +  + Q+VVTE+P   +   +LE+I EL   K                     
Sbjct: 257 RWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLD 316

Query: 299 ----LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPER 351
               +RDES +     ++   +  S D    +  L  +TSL+S   +N+V + N  +P +
Sbjct: 317 LLDAVRDESGKDAPVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQ 376

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  IL  +V FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+
Sbjct: 377 KGLGTILGEWVRFRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPK 436

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A                                   L+E Q   ILE+RL +L  L + 
Sbjct: 437 AA-----------------------------LMSAFGLTERQADDILEIRLRQLARLEKI 467

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  EL  L  E  +  ++L++ S +  ++ +E+     +    RRT I +      +  
Sbjct: 468 KIEKELEELRAEKAKLEELLANESAMKRLMIKEIEGDAKQYGDDRRTLIQQEKRATFEAK 527

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +      V VS  G+V        RA +  G   +    +  D +   F   T   ++ 
Sbjct: 528 VVDEPVT-VVVSQKGWV--------RALKGHGLDPASFTFKAGDGLYAAFQCRTPDVLIA 578

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + S G V+   V  LP G  +  G  + +++ L  G  +        ++       ++ A
Sbjct: 579 WGSKGRVHSVPVQVLPGG--RGDGVPVTSLIELESGTHLMHYFAANAEQQ------LLLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPI 710
           + +G     KL D +   ++GK  M +D   E L+          +   +  G+ + F +
Sbjct: 631 SSNGFGFIAKLGDMVSRVKAGKAFMTIDEGAEPLAPMPVMPLATQVACLSGQGRLLVFGL 690

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             ++  +     GV  ++L   + +     +
Sbjct: 691 DEMKTLSA-GGRGVILMALEDKETLAQALAI 720


>gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
 gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
          Length = 750

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 253/747 (33%), Positives = 383/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+  S  E +        + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MSENAASDFETQ-------PLREFTERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG+AA Y+A+  MAQ ++ R  LI+GQGN+GS 
Sbjct: 54  SELGLSAAAKYKKSARTVGDVLGKYHPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL++LG+ TV++ PN+DG+ QEP  L AR PNVL+NGG
Sbjct: 114 DDPKSFAAMRYTEARLTPYARVLLNELGQGTVEWIPNFDGALQEPERLPARLPNVLLNGG 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVVD CV ++D P+     L E +  PDFPT + VI  R  ++
Sbjct: 174 SGIAVGMATDIPPHNLREVVDACVHLLDRPEATTAELCEHVPAPDFPTASDVITPREELR 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  G G++  R     E    ++ QIV+  +PYQV  A ++E+IA  ++ +++  + D
Sbjct: 234 TIYERGHGTVRARARWEYE---REQAQIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVED 290

Query: 299 LRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD     R+V++L+ R    + +++ L+  T L+  + V++  +    +P  F+L 
Sbjct: 291 LRDESDHDAPVRIVVQLRSRRQDPERVMDHLFATTDLERGYRVHLNVIGLDGRPRVFSLR 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +++FR E V RR  + L K  DR H+L GL  A  N+DEV+ IIR    P+    
Sbjct: 351 DLLAEWLSFRTETVRRRLTWRLEKVEDRLHILEGLLTAYLNIDEVIAIIREEDEPKPV-- 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LS+ Q  AILELRL  L  L    IR 
Sbjct: 409 -LMER--------------------------FGLSDAQAEAILELRLRHLARLEEMKIRG 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L   +RL   +K ELL   +     RR+ +V+      M++ + +
Sbjct: 442 EQGDLERERDELRATLGDAARLREQVKSELLGDAEAHGDERRSPLVQRGPARAMDETELM 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      +G+  +  D   D  +  ++   +F  
Sbjct: 502 PSEPVTVVLSEKGWV--------RAAKGHEVDATGLSYKAGDGYLDHALGRSNQPAIFLD 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +++G+ L   L+  +  R  +++   + ES W     + A+ 
Sbjct: 554 STGRAYAVPAHTLP--SARSQGEPLTKRLTPPEKARFQSVLA-GDSESRW-----LLASD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPI 710
            G   R  L +    NRSGK  + L     +L   T   E D   +++ +  G+ + FP+
Sbjct: 606 AGYGFRVPLRELFSRNRSGKAVLTLPDGAAVLPPVTVPAEADGAEVVVASSDGRLLVFPL 665

Query: 711 SAIRVFAGRNSVGVRGI---SLAKGDQ 734
             +   A      + GI    L   ++
Sbjct: 666 EELPEMARGKGNKLIGIPAQRLRDREE 692



 Score = 41.8 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 14/168 (8%)

Query: 727 ISLAKGDQVISMAIVLHADADY-------DERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  AKG +V +  +   A   Y         +       + +   +   T      + + 
Sbjct: 516 VRAAKGHEVDATGLSYKAGDGYLDHALGRSNQPAIFLDSTGRAYAVPAHTLPSARSQGEP 575

Query: 780 SVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +     E+ +   +     E   L  S+ G+G R    +    NRSGK +    +   
Sbjct: 576 LTKRLTPPEKARFQSVLAGDSESRWLLASDAGYGFRVPLRELFSRNRSGKAVLT--LPDG 633

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             +   V V    D  ++++ S  G L+  P+ E+   +R  KG  + 
Sbjct: 634 AAVLPPVTVPAEADGAEVVVASSDGRLLVFPLEELPEMARG-KGNKLI 680


>gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 787

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 267/741 (36%), Positives = 399/741 (53%), Gaps = 52/741 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM-GVE 66
           +D+    G    S+  E +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M     + 
Sbjct: 20  TDDYMGGGELDASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQADEKLS 79

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
              K+ K A++ G V+G+YHPHG+ A+YDA+ RMAQ +SLRL L++G GNFGS+DGD PA
Sbjct: 80  HEAKHKKSAKVVGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLDGDSPA 139

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  LLD+L   TV FR NYD + +EP VL AR+PN+LVNG  GIAVGM
Sbjct: 140 AYRYTEARLTAAAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTGIAVGM 199

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           ATNIP HNL E+    +A+ D+P++++  L++ I+GPDFPTG  IL  +  ++  Y  GR
Sbjct: 200 ATNIPPHNLRELTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREIYEEGR 259

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I +RG   +E     +  +VVT +PY V KA ++E+IAE++ ++++  + D+RDES  
Sbjct: 260 GAIRVRGEYKLETQKRSK-ILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVRDEST- 317

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKA 360
              RVV+E+K+ A  ++I+  L+++T LQ  F+VN+  L     +  +P +  L  +L+ 
Sbjct: 318 TDVRVVLEIKKDADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLKDMLRH 377

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FR EV  RR ++ L     R H+L G  +    LDE +RIIR S   + A +++M++
Sbjct: 378 FLDFRYEVTERRYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQKIMKK 437

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L + Q  AILELRL RL  L  + IR EL   
Sbjct: 438 --------------------------FGLDKEQVDAILELRLYRLAKLEINIIREELADK 471

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDM 538
             + K    IL S  +L G++K EL  V + L   RRT+       L+ + +  I+ ED 
Sbjct: 472 RSQAKSIEAILRSEKKLWGVVKTELGEVAELLGDARRTKTGGAAAELEFDADAYIIDEDA 531

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V ++  G++KR          R  K  +   +R+ D V  +   ST   V FF++ G  
Sbjct: 532 HVVLTRDGWLKRQ---------RELKDPTSTRLREGDEVMAVLAGSTKEHVAFFTNYGSA 582

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  K++ +P  S    G  +  +     GERI   M F  D  +     ++  +  G  +
Sbjct: 583 YVIKIYDVPATS--GYGDPVQKLFKFKDGERIVAAMAF--DPRAMPPDELLTVSSGGFGQ 638

Query: 659 RNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R     F Q   R+G+   +    DEI+ V    +++ +++ T+ G  +      I    
Sbjct: 639 RFASEPFTQPTTRAGRKFARPPKGDEIVDVVATEEDDIVVVATRKGYTLACRSGEINKL- 697

Query: 718 GRNSVGVRGISLAKGDQVISM 738
                GV  I   + D+VI  
Sbjct: 698 ENPGKGVTVIKTGEHDKVIGF 718



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 24/278 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           INI+     ++ +          S   L+ V  T+ G V   +L    +  ++G  A +L
Sbjct: 461 INIIREELADKRSQAKSIEAILRSEKKLWGVVKTELGEV--AELLGDARRTKTGGAAAEL 518

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +   +         E+  ++ T+ G   R                     L +GD+V+++
Sbjct: 519 EFDAD----AYIIDEDAHVVLTRDGWLKRQRELKDPTST----------RLREGDEVMAV 564

Query: 739 AIVLHAD--ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                 +  A +                 SG  + +  L      E  ++        + 
Sbjct: 565 LAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFKFKDGERIVAAMAFDPRAMP 624

Query: 797 EQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +LTVS  GFG+R +S  F + + R+G+       ++  +   +V V    ++D +++
Sbjct: 625 PDELLTVSSGGFGQRFASEPFTQPTTRAGR-----KFARPPKGDEIVDVVATEEDDIVVV 679

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            + KG  +     EI       KGV +  T + ++V+ 
Sbjct: 680 ATRKGYTLACRSGEINKLENPGKGVTVIKTGEHDKVIG 717



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 72/570 (12%), Positives = 158/570 (27%), Gaps = 91/570 (15%)

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
                 L+         +  R +Y L   +    ++V           VV  I       
Sbjct: 245 LNSKAELREIYEEGRGAIRVRGEYKLETQKRSKILVVTSVPYGVTKATVVERIAEVIIKR 304

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ------------------ 453
              + L  R  + +D++ ++++  D+   +        + +Q                  
Sbjct: 305 KLPQLLDVRDESTTDVRVVLEIKKDADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDAS 364

Query: 454 --TRAILELRLARL----TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK----- 502
              +  L+  L         +     + EL +L   I      +     L   I+     
Sbjct: 365 QPAQLGLKDMLRHFLDFRYEVTERRYQFELAALLRRIHILEGFVVIFDALDETIRIIRRS 424

Query: 503 ----QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
                    +  +    +    V+ +L++        E  ++         R  L+  R+
Sbjct: 425 DGRQDAAQKIMKKFGLDK--EQVDAILELRLYRLAKLEINII---------REELADKRS 473

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q +               +  +         +  + LG V +     L        G A 
Sbjct: 474 QAKS--------------IEAILRSEKKLWGVVKTELGEVAEL----LGDARRTKTGGAA 515

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              L  +    I              + +VV        R+ +L D             L
Sbjct: 516 AE-LEFDADAYII-----------DEDAHVVLTRDGWLKRQRELKDPTSTR--------L 555

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+++V   + +  +   T  G      I  +   +G      +      G+++++ 
Sbjct: 556 REGDEVMAVLAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFKFKDGERIVAA 615

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                     DE +        QR      T+  T      +      E        ++ 
Sbjct: 616 MAFDPRAMPPDELLTVSSGGFGQRFASEPFTQPTTRAGRKFARPPKGDEIVDVVATEEDD 675

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++  + KG+     S +       GKG+      + +++   ++       + + + S 
Sbjct: 676 IVVVATRKGYTLACRSGEINKLENPGKGVTVIKTGEHDKVIGFISGG--RRAEALYVESA 733

Query: 859 KGTLIRV----PVNEIRIASRATKGVVIFS 884
           KG   R      V + R+ +R  KG  +  
Sbjct: 734 KGG--RTFELHAVAQ-RLTTRGGKGHQLVK 760


>gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
 gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
          Length = 758

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/796 (30%), Positives = 397/796 (49%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT A I+     I   Y TGRGSI  R
Sbjct: 190 HNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADIAKVYETGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +     D  +IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYSV-----DAGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VV+        D ++  L+  T L+  F VN+  L    +P    L  +L  ++ FR + 
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLTEWLEFRVDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + ELM R        
Sbjct: 365 VRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AILEL+L  L  L    I+ E + L  E ++  
Sbjct: 414 ------------------FNLTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS  RL  +IK+EL+   +     RR+ IVE      + +++    E + V +S  G
Sbjct: 456 QLLSSDRRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQELTPSEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D      +  ++ + +F  S G  +      L
Sbjct: 516 WV--------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   EDE        + AT  G       +D +
Sbjct: 568 P--SARSQGEPITTRFNMAPGETMQHVI-LGEDEQ-----CFLLATDAGYGFICTYNDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  + L        +E  IL  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPTNAKSLPPRPIDRNREMSILAITNEGRMLLFSLEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ AD            + A +R ++    ++   + +   
Sbjct: 680 IGIPSERAKNREELMTHLQLVPADTSV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
 gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
          Length = 758

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 242/757 (31%), Positives = 387/757 (51%), Gaps = 69/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGV 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV +  V +I+NP  DLDALME ++GPD+PT A +I  +  +K
Sbjct: 174 TGIAVGMATDIPPHNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V H E        IV+T +P+Q + A +LE+IA  +R K++  + D
Sbjct: 234 KVYKSGRGSIRMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVED 288

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      + ++N L+  T L+  F  N+  L    +P+   L+
Sbjct: 289 LRDESDHENPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLV 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ +R   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P+    
Sbjct: 349 EIIAEWLEYRRTTVRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIRNEEDPKA--- 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS +Q  AILE++L +L  L    IR 
Sbjct: 406 --------------------------EFMSRFGLSAIQADAILEIKLRQLAKLEEIKIRA 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E ++   +L S  RL  +IK+E+L+  ++    RR+ +V  E    + + D I
Sbjct: 440 EQDELAKEREQLEKLLGSERRLNTLIKKEILADAEKYGDDRRSPLVEREEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      S +  +  D         ++   +F  
Sbjct: 500 PSEAITVVLSEKGWI--------RHAKGHEVDPSSLNYKSGDSYLAHARGKSNLPAIFLG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   +D+        + A+ 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPITGRLNLTPGTNMRQVLMAEDDQ------IWLMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K +D +  N+SGK  + +     +L  +     + + IL  T  G+ + FPI 
Sbjct: 604 AGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            +          +  I        ++ +S   V+ AD
Sbjct: 664 DLPQLGKGKGNKIINIPSARSKAREEFLSYLTVISAD 700



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +   +     G   ++ A+G   +    +      Y
Sbjct: 498 LIPSEAITVVLSEKGWIRHAKGHEVDPSSLNYKSGDSYLAHARGKSNLPAIFLGSDGRSY 557

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +   +Q  L  S+ G+
Sbjct: 558 ALESHSLPSARSQGEPITGRLNLTPG-----------TNMRQVLMAEDDQIWLMASDAGY 606

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G    S D    N+SGK +     +        VA     +NDQI+ ++++G ++  P+ 
Sbjct: 607 GFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADI---ENDQILAITNEGRMLLFPIK 663

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 664 DLPQLGKG-KGNKIINI 679


>gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 741

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 256/752 (34%), Positives = 391/752 (51%), Gaps = 71/752 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +S D      I   S+++ +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MTQPAVSGD------IRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD+++R  L+EGQGNFG++
Sbjct: 55  RQLKLDPEGGFKKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L   A  L+++L  DTVDFRP YDGS +EPVV+ A +PN+L NG  
Sbjct: 115 DGDNAAAMRYTEAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+GE+ +    +I  PD  +D L+  + GPDFPTG V++  +  I  
Sbjct: 175 GIAVGMATNIPPHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGS  +R    +EK S    QI+VTEIPYQV K+ ++EKIAEL+ EK++  +AD+
Sbjct: 235 AYRSGRGSFRLRAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADI 294

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V+    R   A++++ QL+R T L+   S+NM  L+    P    L  +L
Sbjct: 295 RDESAEDVRVVLEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQVL 354

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+++ L+K   R  VL G  +A  NLDEV+RIIR    P+       
Sbjct: 355 QAFLDHRMEVLERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEPKAV----- 409

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+EVQT AIL +RL  L  L   +IR E +
Sbjct: 410 ------------------------MMRTFGLTEVQTEAILNMRLRSLRKLEEFEIRKEHD 445

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD--MEDED 531
            L  E  +   +L+  SR    I  ++ + +           RRT++ +      +  E 
Sbjct: 446 QLSAEKSDLEALLADESRRWSTIAAQVAATRKAFGPGTPLGDRRTQLADAPSAVVVPIEA 505

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            + RE + + +S  G++        RA +       GV  ++ D +       T   +L 
Sbjct: 506 FVEREPITLLLSEKGWI--------RAMKGHVDQLDGVKFKEGDQLKLALKAETTDKLLV 557

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+S G  Y     +LP G  +  G+ L  ++ +     +  +              ++ +
Sbjct: 558 FTSDGRFYTIGGDKLPSG--RGFGEPLRLMIDMANDAEVLCVFAHK------PGRKLLLS 609

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G     + ++ +   ++GK+ + L    E  +     + + + +     + + F   
Sbjct: 610 SSGGRGFIVEEAEVLAQTKAGKMVLNLGDEGEKAAFCLPAEGDAVAIIGDNRKLLVFMAE 669

Query: 712 AIRVFAGRNSV--------GVRGIS---LAKG 732
            I V A    V        GV  I    LA G
Sbjct: 670 EIPVMARGRGVLLQKYRDGGVADIKVFTLADG 701


>gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2]
 gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2]
          Length = 745

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 239/746 (32%), Positives = 382/746 (51%), Gaps = 63/746 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
               S  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K
Sbjct: 3   DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE
Sbjct: 63  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ TV++ PN+DG+  EP +L AR PNVL+NG  GIAVGM+T+IP 
Sbjct: 123 SKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV + C+ ++ +P   LD LM+ I+GPDFPT A VI     I   YA G+GS+  R
Sbjct: 183 HNLREVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E+       IVVT +PYQV+ A +LE+IA+ + +K++  ++DLRDESD +    +
Sbjct: 243 AVYEREEGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRL 297

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           +   R      + +++ L+  T L+  + VN+  +    +P+  +L  IL  ++ FR   
Sbjct: 298 VITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMVT 357

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K  +R H+L GL  A  N+DEV+ IIR    P+     LM+R        
Sbjct: 358 VRRRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPV---LMER-------- 406

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +S+ Q  AILEL+L  L  L    IR E + L  E +   
Sbjct: 407 ------------------FGVSDRQAEAILELKLRHLAKLEEMKIRGEQDELNEEREYLE 448

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
             L S +++  ++ +EL    ++    RR+ +V  E    +++ D +  + + V +S  G
Sbjct: 449 TTLGSMAKMKKLVAKELKDDAEKYGDDRRSPLVEREDAKALDESDLLSADPITVVLSEKG 508

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +       G+  +  D         ++ SV F  S G  Y      L
Sbjct: 509 WV--------RAAKGHEVDVEGLSYKAGDKYKACAKGKSNQSVCFIDSTGRTYSLPAHTL 560

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   +S   G      +   + ++       + +T  G     + +D +
Sbjct: 561 P--SARGQGEPLSGRVSPPSGASFMAAVMGKDKDA------YLMSTDAGYGFVVRYADLL 612

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVF---AGRNS 721
              ++GK  + +     +L  +    T ++ I L +  G+ + FP+S +       G   
Sbjct: 613 ANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSNEGRLLVFPVSELPEMVRGKGNKM 672

Query: 722 VGVRGISLAKG-DQVISMAIVLHADA 746
           + + G  +A   + V  + +V   DA
Sbjct: 673 MSIPGARVADRVEFVQDVQVVGPNDA 698


>gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b]
          Length = 751

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 256/806 (31%), Positives = 399/806 (49%), Gaps = 76/806 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I + +E  EK      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M +
Sbjct: 2   KKIPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSE 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D 
Sbjct: 58  LGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 117

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  G
Sbjct: 118 PKSFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  
Sbjct: 178 IAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAM 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI +R +   E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + DLR
Sbjct: 238 YESGNGSIKMRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLR 292

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +     V+I        + +++ L+  T L+  + VN   +    KP    L+ I
Sbjct: 293 DESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAI 352

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L
Sbjct: 353 LTEWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            L+E Q  AILE++L  L  L    +R EL
Sbjct: 410 ISR--------------------------FNLTERQAEAILEMKLRHLAKLEEIKLRGEL 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E       L+S   L  ++K+E+   +DE   PRR+ I+  E    +++ED +  
Sbjct: 444 DELSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA +        +  +  D      +  T+  VLFF   
Sbjct: 504 EPITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGE 555

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY      LP  S + +G+ L   L+  +G     I+             V+ AT  G
Sbjct: 556 GKVYSLPGHVLP--SARGQGEPLTGKLNPAEGVLFEAIV------GGEPEQKVLLATDSG 607

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL--LTTKLGQCVRFPISAI 713
                K+ D    NR+GK  +KL     IL          +     T +G+ + F +  +
Sbjct: 608 YGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL 667

Query: 714 RVFAGRNSVGVRGISLAK----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +      +  I  AK     + ++ M ++   D+           + A +R  +   
Sbjct: 668 PELSRGKGNKLISIPAAKAVSREEYIVDMQVLTTNDS---------LTVYAGKRHFTLKG 718

Query: 770 EEITSLKNDSSVEGNISEERCQELKL 795
           E++T  K +    GN      Q +  
Sbjct: 719 EDLTHYKGERGRRGNRLPRGLQNVSQ 744



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 39/253 (15%)

Query: 663 SDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVF 716
            +F    RS  I       L   D +        E   ++ +K G  +  +      +  
Sbjct: 476 DEFGDPRRSPIITREDSQALKEEDIL------PNEPITVVLSKNGWVRAAKGHDVDGKEL 529

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + +     +  +LA+ +Q +           Y      +     Q   ++G       + 
Sbjct: 530 SYKAGDEFKAQTLARTNQQV--LFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVL 587

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++ V G             EQ +L  ++ G+G      D  + NR+GK      +S+ +
Sbjct: 588 FEAIVGG-----------EPEQKVLLATDSGYGFIAKIEDLYVKNRNGKA--CIKLSENS 634

Query: 837 EIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TAKD 888
               ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +++
Sbjct: 635 ---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSRG-KGNKLISIPAAKAVSRE 690

Query: 889 ERVVSVERIRESE 901
           E +V ++ +  ++
Sbjct: 691 EYIVDMQVLTTND 703


>gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 773

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/769 (31%), Positives = 385/769 (50%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTADLFAGPDAPDTDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V +R+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P++A                                   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKSA-----------------------------LMSAFGLTERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +
Sbjct: 621 VDQQ------LLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ACLSSGGRLLVFAMDEMKTLSG-GGRGVTLMALDDKETLVQALAIDPAG 722


>gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264]
          Length = 772

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 375/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722


>gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 580

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 259/559 (46%), Positives = 346/559 (61%), Gaps = 32/559 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD     L+E     I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE+  R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + +TAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMN---------- 450

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I++  D
Sbjct: 451 ----------------LLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSG 568
           R     YRAQ RGGKG   
Sbjct: 555 RTKADEYRAQHRGGKGIKA 573



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS---EERCQELKLKEQFILTVSE 805
           ++    +     QR+++  + +EI +   D      +    E   ++L  +E  ++TV+ 
Sbjct: 490 EDYNDILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTR 549

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            G+ KRT + ++R  +R GKGI+A +  K
Sbjct: 550 AGYIKRTKADEYRAQHRGGKGIKALNCVK 578


>gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
 gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
          Length = 742

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 248/767 (32%), Positives = 385/767 (50%), Gaps = 63/767 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I+      +GI   S+    + +YL YA+ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MSQQMINY-----EGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  L++GQGN+GSV
Sbjct: 56  SELGLKSTAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSV 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L K +  LL++  + TVD+ PN+DGS  EP VL AR P+VL+NG 
Sbjct: 116 DDPKSFAAMRYTEAKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVV+ CVA++DN ++    L E + GPD+P  A VI       
Sbjct: 176 SGIAVGMATDIPPHNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERL 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GSI  R    +E+       +V+  +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 236 RLYETGSGSIRQRANYFVEEGVN----VVIDALPFQVSGAKVLEQIASQMRAKKLPMVVD 291

Query: 299 LRDESDRQGYRVVIE--LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++     +    +  +  L+  T L+  + VN+  +    +P+  +L 
Sbjct: 292 LRDESDHENPIRLVVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R E V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+    
Sbjct: 352 TMLTEWLVYRTETVRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            LS+ Q  A+LEL+L +L  L    IR 
Sbjct: 410 -LMER--------------------------FGLSDTQAEAVLELKLRQLAKLEEMRIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E K+   IL S +R+  ++K+ELLS  +     RR+ + +      M ++D +
Sbjct: 443 EQEELEAERKKIEKILGSAARMKTLVKKELLSDAEAYGDDRRSPLSDAKQAQAMSEQDLL 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +        +  +  D      +  +    +F  
Sbjct: 503 PSESITVVLSENGWV--------RAAKGHDVDGRTLGYKSGDAFCSQALGQSRQLSVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G  Y      LP  S ++ G+ L   LS   G +   +M     E        V A+ 
Sbjct: 555 DTGRAYSLPAHSLP--SARSHGEPLTGRLSPASGAKFKQVMLGQPKEQ------YVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G     +L +    N++GK A+ L    E+L+      EN +++ T   + + F +S +
Sbjct: 607 AGYGFITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVMVVTDEPRMLVFEMSEL 666

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            V +     G + + + KG  V ++               Y K   A
Sbjct: 667 PVLS--KGKGNKLMQMPKGVSVKAIFAFKPGQKVEVVAGKYSKSFGA 711



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 76/232 (32%), Gaps = 23/232 (9%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            D        K A  +  +D          E+  ++ ++ G         +         
Sbjct: 481 DDRRSPLSDAKQAQAMSEQD------LLPSESITVVLSENGWVRAAKGHDVDGRTLGYKS 534

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G    S A G        +      Y      +    +    ++G     +  K    + 
Sbjct: 535 GDAFCSQALGQSRQLSVFLDDTGRAYSLPAHSLPSARSHGEPLTGRLSPASGAKFKQVML 594

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G            KEQ++L  S  G+G  T   +    N++GK   +       +   L+
Sbjct: 595 GQ----------PKEQYVL-ASSAGYGFITELENLYSKNKAGKAAISLP-----KGSELL 638

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           A   V   + +++V+D+  ++   ++E+ + S+  KG  +    K   V ++
Sbjct: 639 APARVEAENWVMVVTDEPRMLVFEMSELPVLSKG-KGNKLMQMPKGVSVKAI 689


>gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
 gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
          Length = 752

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 237/723 (32%), Positives = 373/723 (51%), Gaps = 58/723 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTEKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+
Sbjct: 126 SKYADVLLGELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDIPPHNV 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD +++I++GPD+PT A +I  R  I+  Y +GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+  +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPSVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LM R           
Sbjct: 361 RLNYRLEKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPV---LMSR----------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +SE Q  AILEL+L  L  L    IR E N L  E  +   IL
Sbjct: 407 ---------------FAISETQAEAILELKLRHLAKLEEMKIRGEQNDLEKERDQIQAIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  ++  ++K+EL +  +     RR+ +   E    M + D +  E + + +S + +V 
Sbjct: 452 ASERKMNNLLKKELQADAEAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMSWV- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +       G+  +  D         ++  V+F  S G  Y      LP  
Sbjct: 511 -------RSAKGHDIDAKGLSYKAGDSWKASVKGKSNQPVVFIDSTGRSYAIDPITLP-- 561

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S + +G+ L   L+L  G  +  ++         +   ++ A+  G       SD +  N
Sbjct: 562 SARGQGEPLTGKLTLPPGATVDHMLM------EGDEQKLLMASDAGYGFVCTFSDLVARN 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  + L     ++       E + +L  T  G+ + FP+S +   +      + GI 
Sbjct: 616 RAGKALITLPENARVMPPLVIEDESDMLLAITSAGRMLMFPVSDLPQLSKGKGNKIIGIP 675

Query: 729 LAK 731
            A 
Sbjct: 676 TAD 678



 Score = 44.9 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  EQ +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 587 MEGDEQKLLMASDAGYGFVCTFSDLVARNRAGKALITLPENARVMPPLVIE----DESDM 642

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           ++ ++  G ++  PV+++   S+  KG  I 
Sbjct: 643 LLAITSAGRMLMFPVSDLPQLSKG-KGNKII 672


>gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4]
          Length = 772

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 374/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S   +N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAVLNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722


>gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
 gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
          Length = 751

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 257/806 (31%), Positives = 401/806 (49%), Gaps = 76/806 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I + +E  EK      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M +
Sbjct: 2   KKIPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSE 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D 
Sbjct: 58  LGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 117

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  G
Sbjct: 118 PKSFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  
Sbjct: 178 IAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAM 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI +R +   E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + DLR
Sbjct: 238 YESGNGSIKMRAIYAQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLR 292

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +     V+I        + +++ L+  T L+  + VN   +    KP    L+ I
Sbjct: 293 DESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAI 352

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L
Sbjct: 353 LTEWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            L+E Q  AILE++L  L  L    +R EL
Sbjct: 410 ISR--------------------------FNLTERQAEAILEMKLRHLAKLEEIKLRGEL 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E       L+S S L  ++K+E+   +DE   PRR+ I+  E    +++ED +  
Sbjct: 444 DELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA +        +  +  D      +  T+  VLFF   
Sbjct: 504 EPITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGE 555

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY      LP  S + +G+ L   L+  +G     I+             V+ AT  G
Sbjct: 556 GKVYSLPGHALP--SARGQGEPLTGKLNPAEGVLFEAIV------GGEPEQKVLLATDSG 607

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL--LTTKLGQCVRFPISAI 713
                K+ D    NR+GK  +KL     IL          +     T +G+ + F +  +
Sbjct: 608 YGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL 667

Query: 714 RVFAGRNSVGVRGISLAK----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +      +  I +AK     + ++ M ++   D+           + A +R  +   
Sbjct: 668 PELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS---------LTVHAGKRHFTLKG 718

Query: 770 EEITSLKNDSSVEGNISEERCQELKL 795
           E++T  K +    GN      Q +  
Sbjct: 719 EDLTHYKGERGRRGNRLPRGLQNVSQ 744



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 39/253 (15%)

Query: 663 SDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVF 716
            +F    RS  I       L   D +        E   ++ +K G  +  +      +  
Sbjct: 476 DEFGDPRRSPIITREDSQALKEEDIL------PNEPITVVLSKNGWVRAAKGHDVDGKEL 529

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + +     +  +LA+ +Q +           Y      +     Q   ++G       + 
Sbjct: 530 SYKAGDEFKAQTLARTNQQV--LFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGVL 587

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++ V G             EQ +L  ++ G+G      D  + NR+GK      +S+ +
Sbjct: 588 FEAIVGG-----------EPEQKVLLATDSGYGFIAKIEDLYVKNRNGKA--CIKLSENS 634

Query: 837 EIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TAKD 888
               ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +++
Sbjct: 635 ---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSRG-KGNKLISIPVAKAVSRE 690

Query: 889 ERVVSVERIRESE 901
           E +V ++ +  ++
Sbjct: 691 EYIVDMQVLTTND 703


>gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
 gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
          Length = 767

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 261/738 (35%), Positives = 391/738 (52%), Gaps = 36/738 (4%)

Query: 6   ISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +S D E   G   V  S+   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++
Sbjct: 1   MSDDNETAPGPNDVTESLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRL 60

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD
Sbjct: 61  RLSPTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+  AA  LL+ L +D VDFR NYDG   EP VL A +PN+L NG  GIA
Sbjct: 121 NPAASRYTEARMTAAAEALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGSSGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYA 242
           VGMATNIP HNL E++D C+ +I +P    D+L+  I GPDFPTG VI+     +  AY 
Sbjct: 181 VGMATNIPPHNLHELIDACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMAEAYR 240

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+RDE
Sbjct: 241 TGRGSFRLRAKWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDE 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAF 361
           S      V+    R    ++++  L+R + L+  FS+NM V ++G  P+  +L  +L+AF
Sbjct: 301 SAEDVRVVLEPRARSVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLRAF 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V+VRR+++ L K   R  VL G  IA  +LD V+ IIR+  +P++A   LM   
Sbjct: 361 LDHRRDVLVRRSRHRLGKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSA---LMAED 417

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W    I+   +   D      +D  + L+EVQ  AIL +RL  L  L   ++  E ++L 
Sbjct: 418 WAHPHIRATSEK--DYVGPKATDPEIALTEVQAEAILNMRLRSLRRLEELELIAERDALR 475

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTR--IVEGLLDMEDEDCIV 534
            E +  + +L+  +     I  EL   + +         RRT+  +   +  +  E  I 
Sbjct: 476 AERQGIMALLADEALQWARIADELRETRKQFGRTSPGGARRTQFALAADVAYVPIEAMID 535

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE + V  S +G+V        RA          +  +D D     F   T   +L F +
Sbjct: 536 REPITVVCSQMGWV--------RAMTGHIDLTRDLKFKDGDAARFTFHAETTDKLLVFGA 587

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP G  +  G+ L  ++ L     I  I+     E       ++ A+  
Sbjct: 588 NGRFYTVSAANLPGG--RGMGEPLRLMIDLPNEAEIIDILIHKPGEK------LLVASTD 639

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           GN       + +   R+GK  + L        +      + + +  +  + + F I  + 
Sbjct: 640 GNGFVVPEVEVVAQTRAGKQVLNL--GASTARLCKRIAGDHVAVVGENRKVLVFGIDELP 697

Query: 715 VFAGRNSVGVRGISLAKG 732
                   GVR      G
Sbjct: 698 EMT--RGKGVRLQKYKDG 713


>gi|167766556|ref|ZP_02438609.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|167711679|gb|EDS22258.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|291558594|emb|CBL37394.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SSC/2]
          Length = 750

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 244/738 (33%), Positives = 405/738 (54%), Gaps = 36/738 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M ++G+ +++ + K
Sbjct: 3   EHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY++L  M+QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RLQK      L DL K+ VDF  N+D + +EP VL  + PN+LVNG  GIAVGM T+IP 
Sbjct: 123 RLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD   A +    I  + LME I+GPDFPTG +++ +  + N Y++G G + +RG
Sbjct: 183 HNLGEVVDAVKAYMRKESITNEELMEYIKGPDFPTGGLVINKKDLLNIYSSGTGKLKLRG 242

Query: 253 VSHIEKTS--GDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               E     G+++++V++EIPY +   N +  L     L+  K   DI D+ +ES + G
Sbjct: 243 KVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESSKDG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++GA  + + N LY+ T L+  F VNM+A+   +PE   L GI++    F  E
Sbjct: 303 IRIVLELRKGADVERLKNLLYKKTKLEDTFGVNMLAIVDGRPETLDLKGIIENHTQFYYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V  R+ K LL+K  ++  +  GL  A   +D ++ IIR S + +  +  L +      + 
Sbjct: 363 VTRRKYKTLLSKLYEQREIKEGLIKACDMIDLIIEIIRGSKSQKEVKACLTKGDVGNINF 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K    +I+           +  ++ Q  AIL+L+L RL GL    ++ E   +  +I+E 
Sbjct: 423 KSSDSMIE--------ATKLSFTDKQASAILDLKLYRLIGLEILMLKEEYEEILAKIEEY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   L  +I++EL  +K E    RRT + +G   +     +  E +   +   GY
Sbjct: 475 EDILNNEKSLKNVIRKELDKIKKEFGRERRTVVEDGKEAVYVAAPVKEETVYFVMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  + Y+  +         ++++  F+           +  F++LG +++ KV  +P
Sbjct: 535 SKTMDKATYQRNKE-------NILKEYKFIV---PCMNTDKICIFTNLGVMHQIKVLDIP 584

Query: 608 IGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  + +G  + N+ + +   E I  ++    D  S  +  ++FAT    ++     + +
Sbjct: 585 AGKFRDKGVPIDNLCNYDSTKEYIIQVL----DAESMIHSSLLFATAKSMLKVMD-GELL 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              +    A KL   DE++ V         E+ ++L TK G  ++F +S I     ++++
Sbjct: 640 NAAKRTVQATKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEI-PKKKKSAL 697

Query: 723 GVRGISLAKGDQVISMAI 740
           GVRG+ L+K D + ++ +
Sbjct: 698 GVRGMKLSKDDSLTNIYV 715



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            +    +L  + K   K         + R    ++AT +S+   I  +   +     D++
Sbjct: 616 SMIHSSLLFATAKSMLKVMDGELLNAAKR---TVQATKLSEDELIEVIPIDWMEGSEDKV 672

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +L + +G  ++  ++EI    ++  GV     +KD+ + ++
Sbjct: 673 VLQTKEGVFLKFLLSEIPKKKKSALGVRGMKLSKDDSLTNI 713


>gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
 gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
          Length = 774

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 247/750 (32%), Positives = 375/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF  NYDG F EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP +    LM+ I GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           + +  + Q+V+TE+P       +LE+I E    K  +                      +
Sbjct: 261 ELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAV 320

Query: 300 RDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +     ++   + +  D    +N L  +TSL+S  S+N+V + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 --------------------------LMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E     ++L S S +  ++ +E+     +    RRT I +      +   +   
Sbjct: 472 LAELKDEKARLEELLGSESAMKRLLIKEIEGDAKQYGDERRTLIQQEKRATFEARVVDEP 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 532 VT-VVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYAAFQCRTPDTLVAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        D++      ++ A+ +G 
Sbjct: 583 RVYSVAVAMLPGG--RGDGVPVTSLIELESGSHLMHYYAASADQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               ++ D +   ++GK  M +D+  + +  +        I   +  G+ + F +  ++ 
Sbjct: 635 GFIARVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDATHIACLSSNGRLLVFGLDEMKT 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L + + ++    + +A 
Sbjct: 695 LSG-GGRGVTLMALDEKETLVQALSINNAG 723



 Score = 39.1 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 6/179 (3%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G +   GD + +       D           +  A   L  G  + +          G+
Sbjct: 553 AGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGS 612

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L  S  GFG      D     ++GK     D         L  +
Sbjct: 613 HLMHYYAA--SADQALLLASSNGFGFIARVGDMVSRVKAGKSFMTIDAGAQ----PLAPM 666

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             + D   I  +S  G L+   ++E++  S   +GV + +  + E +V    I  + +V
Sbjct: 667 PMLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMALDEKETLVQALSINNAGVV 725


>gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12]
 gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12]
          Length = 757

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 246/796 (30%), Positives = 398/796 (50%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  CV ++DNP  DL+ LME + GPD+PT A +I  R  I   YATG+GSI  R
Sbjct: 190 HNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYATGKGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY--R 309
            V  IE       +IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +     
Sbjct: 250 AVYAIENG-----EIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVRI 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VVI        D ++  L+  T LQ  F VN+  L    +P+   L  IL  ++ FR   
Sbjct: 305 VVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNGRPQVKGLKQILTEWLEFRLTT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR  + L+K   R H+L  L +A  N+DEV+ IIR+  NP   + ELM R        
Sbjct: 365 VTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENP---KAELMSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +S++Q  AIL+L+L  L  L    I +E   L  E  +  
Sbjct: 414 ------------------FKVSDIQADAILDLKLRHLAKLEEMKITSEQGELATERDKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS  RL  +IK+EL+   +     RR+ +VE      + + +    E + V +S  G
Sbjct: 456 LLLSSDRRLKTLIKKELIQDGETYGDDRRSPLVERSESKALTEHELSPVEAVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D         ++   +F  S G  +  +   L
Sbjct: 516 WV--------RCAKGHDIDGNGLSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    +L+ GE +  ++   ED+      + + A+  G        D +
Sbjct: 568 P--SARSQGEPITTRFNLSPGEVMEHVLLGDEDK------FYLLASDAGYGFVGSYKDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  +++  +   +     IL  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPANAKVIKPKLVDKSKVESILAITNEGRMLLFSMEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   V+               + A +R ++    ++   + +   
Sbjct: 680 IGIPTERAKNREELLTHLYVVPEGTSV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|297243586|ref|ZP_06927517.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888337|gb|EFH27078.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 887

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 281/938 (29%), Positives = 458/938 (48%), Gaps = 140/938 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  +  Y+
Sbjct: 18  KEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ T
Sbjct: 137 ARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+   R 
Sbjct: 197 HNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGAFTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +HIE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +DR    R+V
Sbjct: 257 TTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTRIV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R  VV R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRRTVVRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +L++            
Sbjct: 377 RSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIK------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L  +I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           SS ++L  ++  ++ +   + DTPRRT +++   D                         
Sbjct: 471 SSEAKLDNVVIADMDTAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          +  E   V +S  G + R  ++V      
Sbjct: 531 NKITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNS 590

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-----IGSPQ--AR 614
                     +       +F  +T ++    +S G +    V  LP      G P   + 
Sbjct: 591 HNNNVFNTPCKT------MFETTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLSH 644

Query: 615 GKALINILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     +L+  Q      GER+ + + F   ++S N   +   T++G V+R        +
Sbjct: 645 GVKAQELLTSTQSTDPVRGERVVSAIAF---DASQNATPLAIGTRNGVVKRWNFEAPTTM 701

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +    I   L   D +++       + ++  +     + F    +R   GR + G+ GI 
Sbjct: 702 DSWSIID--LKDDDTVIAAAPAEDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAGIR 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+G +V + A+V     ++          SA   ++     +  +L             
Sbjct: 759 LAEGAKVATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPG----------- 807

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAVFP 846
                          +E G  K T    +    R+  G+R+    K  +    A V  +P
Sbjct: 808 ---------------TENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDTLIHAYVGYYP 852

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +        V++ G+ + +P  ++R   R   G  + S
Sbjct: 853 LQ------AVTEGGSNVELPKPDMR---RDASGTELVS 881



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRT 812
           Y +   A         E +TS ++   V G            +    L + +  G  KR 
Sbjct: 634 YEEGKPALLSHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATPLAIGTRNGVVKRW 693

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +       +       +  +  + +   ++A  P  DND+++ +S   +L+     ++R 
Sbjct: 694 NFEAPTTMD-------SWSIIDLKDDDTVIAAAPAEDNDRLVFISSDSSLLTFDAKQVRP 746

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
             R   G+     A+  +V +   + E  I    +E E+
Sbjct: 747 QGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWHYEEGEN 785


>gi|56752405|ref|YP_173106.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|56687364|dbj|BAD80586.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
          Length = 858

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 288/947 (30%), Positives = 447/947 (47%), Gaps = 151/947 (15%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I  +       I   ++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTDSIQFNG---ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + K AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 58  HELGLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   +H   L+++G++TVDF  N+D S QEP VL A+ P +L+NG 
Sbjct: 118 DNDPPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VD  +A+ID P +    L+  + GPDFPTG  ++G  GI +
Sbjct: 178 SGIAVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           AY  GRGSI +RG++ IE+         R  I+VTE+PYQV+KA  +EK+A+LV + ++ 
Sbjct: 238 AYLEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQ 297

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IAD+RDESDR+G RVVIEL+R A AD +L QLY+ T+LQS F   ++A+   +P++ +L
Sbjct: 298 GIADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++FRE  + RR  + L +   R  +L GL  ++++LD ++ I+R SP+  TAR
Sbjct: 358 KQLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTAR 417

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L                               L+E Q  A+L + + R+T L ++ ++
Sbjct: 418 ARLQVH--------------------------FDLNERQADAVLSMPMRRITSLEQEQLQ 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------------- 520
            E  +L  +      +L  R  LL  +K++L  +K    +P RTR+              
Sbjct: 452 QEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPHRTRLPEIPPEAIAAPRQV 511

Query: 521 -------------------------------VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                                          V     +       +E   + +S    ++
Sbjct: 512 TAPVAPISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQLQ 571

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
               +      +   G         DF   L        +L  ++ G  Y+  +  +  G
Sbjct: 572 AASATELEPWLKAKSGAQERT----DFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG 627

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                   + N+L    G + T I        +     ++  +  G V+R  L++  +I+
Sbjct: 628 -------PIANLLP--TGRQSTAIAATLLLPLASEERSLLPLSSQGRVKRLALTELAEIS 678

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGIS 728
             G   +KL   + I +   C  + ++LL +  G  +     +    A R S G  R + 
Sbjct: 679 NRGLQLLKLAEEEIIQAACLCAPQQEVLLGSSGG-RLLRLSLSELPLASRISRGQPRLLR 737

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +G+Q +                                                    
Sbjct: 738 LREGEQPLG--------------------------------------------------- 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +  +L VS  G  KR      R+      G  A   +  ++   L+A+ P  
Sbjct: 747 -CLSLPSGQDLLL-VSTLGLVKRLPLGLLRLCRAGDLGNNAFRFT--DKRDRLIALLPAP 802

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                I  SD+  L +  ++ I +     +G  +F+    E + S  
Sbjct: 803 SQGLAIFASDQ-RLWQRSISTIAVTGTDAEGQTLFNLRSTETLQSAT 848


>gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
 gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
          Length = 753

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 389/758 (51%), Gaps = 67/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  +E+E     SVS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M
Sbjct: 1   MSDMPMLPEEDE-----SVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSA 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL A+ PNVL+NG 
Sbjct: 116 DDPKSFAAMRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVV   + +++ P   LD L E I+ PDFPT A +I  R  IK
Sbjct: 176 TGIAVGMATDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEIK 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R     E        I+V  +P+QV+ A +LE+IA  ++ K++  + D
Sbjct: 236 AFYRSGRGSIKMRAHWRKEDG-----AIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVND 290

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           LRDESD +     V++        D ++  L+  T L+  + +N+  + N  +P   +L 
Sbjct: 291 LRDESDHENPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSLD 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++ FR E V RR +Y L K   R H+L G  IA  N+DEV+ IIR    P+    
Sbjct: 351 AILREWLEFRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPKPV-- 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LMQR                            LS+ Q  A+LEL+L  L  L    IR 
Sbjct: 409 -LMQR--------------------------FGLSDAQAEAVLELKLRNLAKLEEMKIRG 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E ++    L S +R+  +IK+ELL+V ++    R + +V  E      +++ +
Sbjct: 442 EQDELEKEREQLELTLGSTARMRTLIKKELLAVAEQFGDERSSPLVAREEAKAFSEKELM 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +      + +  +  D         ++ S +   
Sbjct: 502 STEPITVVLSEKGWI--------RAAKGHDIDPTSLSYKAGDNFNLAAAGRSNQSAILID 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ +   +S   G     ++   E +       ++ A+ 
Sbjct: 554 STGRAYTLPTHNLP--SARGQGEPVTGRISPPPGVGFKALLLGDERQK------ILLASD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPIS 711
            G     +L   +  N++GK  + L +  E+L        +D+L+   +  G+ + FP++
Sbjct: 606 AGYGFVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDLLVAAVSTEGRLLVFPLA 665

Query: 712 AIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADA 746
            +   A         V    +   ++++    VL  ++
Sbjct: 666 DLPELARGKGNKILSVPSARVKSREEMVKGIAVLTQES 703


>gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 778

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 249/772 (32%), Positives = 377/772 (48%), Gaps = 75/772 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +  D         +++ D  + +YL YA++V+  RA+P++ DG KPV RRIL+ M
Sbjct: 1   MSEE-LELDFSPPSDGEYLTLGDYAERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+++ Y+AL R+AQD+S+R  LI+GQGNFGS 
Sbjct: 60  HEMGLAADAKPVKSARVVGDVLGKYHPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L  R P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAQLLLDEIDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT +P HNL EV    + +I NP++D  ALME I GPDFP G  I+     I  
Sbjct: 180 GIAVGMATEVPPHNLREVAQAAIELIRNPNLDHAALMERIPGPDFPGGGQIISSPAEIAA 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
           AY +GRGS+ +R    IE+ +  + Q+V+TE+P   +   +LE+I EL   K  +     
Sbjct: 240 AYESGRGSLKVRARWKIEELARGQWQLVITELPPGTSSQKVLEEIEELTNPKVKLGKKTL 299

Query: 299 -----------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++             +N L  YTSL+S   +
Sbjct: 300 TPEQLQTKQSLLALLDAVRDESGKDSPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAPI 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L+K +DR H+L G  I   NLD
Sbjct: 360 NLVMIGADGRPRQKGLGEILREWIGYRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNLD 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LS+ Q   IL
Sbjct: 420 EVIRIIRESDEPKAA-----------------------------LIAAFGLSQRQADDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L +  I  EL  L  E      +L S   +  +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEKIKIEKELGELRDEKARLEQLLGSDVAMKRLIIKEIEADAKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I +      +   +      V VS  G+V        R  +  G   SG   +  D + 
Sbjct: 511 LIQQDKRATFEARVVDEPVT-VVVSQRGWV--------RTLKGHGLDASGFTFKAGDSLY 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             F   T  +++ + S G VY   V  LP G  +  G  + +++ L  G  +      P 
Sbjct: 562 AAFQCRTPDTLIAWGSNGRVYSVPVAALPGG--RGDGVPVTSLIELEAGTHLMHYFAAPL 619

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           ++       ++ A+ +G     ++ D I   ++GK  M +D+  + L+      +   + 
Sbjct: 620 EQP------LLLASSNGFGFIARIGDMISRVKAGKSFMTIDAGAQPLAPMPMWPDASQVA 673

Query: 699 TTKLG-----QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              LG     + + F +  ++  +     GV  I L   +Q++    +  A 
Sbjct: 674 CLALGAKDETRLLVFGLDEMKTLSS-GGRGVTLIGLDGNEQLLQALAIGQAG 724


>gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
 gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
          Length = 756

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/752 (32%), Positives = 402/752 (53%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+  
Sbjct: 2   SAEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL ++ + TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTESKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT+IP HN+ EV +  V ++DNP  DLD +M  I+GPD+PT A +I   + IK  Y+TGR
Sbjct: 182 ATDIPPHNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V H E +      IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R     A+ ++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLDLRPQVKGLVSILNEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R  
Sbjct: 357 EFRRTTVRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDP---KHELMTR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+ +Q  AILE++L +L  L    IR E + L  
Sbjct: 412 ------------------------FDLTAIQAEAILEIKLRQLAKLEEIKIRGEQDELAK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  +   +L S  RL  +IK+E+L+  ++    RR+ ++E      M + D I  E + V
Sbjct: 448 ERDQLEKLLGSERRLSTLIKKEILADAEKFGDDRRSPLIERDEAKAMTERDLIPSEAITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +      + +  +  D         ++   +F  + G  Y 
Sbjct: 508 ILSDKGWI--------RHAKGHEVDPTTLNFKSGDKYLTHAHGKSNAPAVFIGNNGRSYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G +IT ++   ED++       + ++  G     
Sbjct: 560 LESHTLP--SARSQGEPITGRLNITAGSQITHVVMGEEDQTW------LISSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  N++GK  + L     +++ ET +    ++IL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEILAITNEGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADAD 747
                +  I  A+    D+ +S  + L   A 
Sbjct: 672 GKGNKIINIPAARSKSRDEFLSYLLPLPQGAT 703



 Score = 45.7 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ +  G         +         G + ++ A G        + +    Y
Sbjct: 499 LIPSEAITVILSDKGWIRHAKGHEVDPTTLNFKSGDKYLTHAHGKSNAPAVFIGNNGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S+     +  ++Q  L  S+ G+
Sbjct: 559 ALESHTLPSARSQGEPITGRLNITAG-----------SQITHVVMGEEDQTWLISSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    N++GK +     + +      V+     D+D+I+ ++++G ++  P+ 
Sbjct: 608 GFVCKGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDL---DSDEILAITNEGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 665 DLPQLGKG-KGNKIINI 680


>gi|283783172|ref|YP_003373926.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
 gi|283440999|gb|ADB13465.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
          Length = 887

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 282/939 (30%), Positives = 457/939 (48%), Gaps = 140/939 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  +  Y+
Sbjct: 18  KEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ T
Sbjct: 137 ARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+   R 
Sbjct: 197 HNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGAFTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +HIE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +DR    R+V
Sbjct: 257 TTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTRIV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R  VV R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRRTVVRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +L++            
Sbjct: 377 RSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIK------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L  +I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           SS ++L  ++  ++ S   + DTPRRT +++   D                         
Sbjct: 471 SSEAKLDNVVIADMDSAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          +  E   V +S  G + R  ++V      
Sbjct: 531 NKITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNS 590

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-----IGSPQ--AR 614
                     +       +F  +T ++    +S G +    V  LP      G P     
Sbjct: 591 HNNNVFNTPCKT------MFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNH 644

Query: 615 GKALINILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     +L+  Q      GER+ + + F   ++S N   +   T++G V+R        +
Sbjct: 645 GVKAQELLTSTQSTDPVRGERVVSAIAF---DASQNATPLAIGTRNGVVKRWNFEAPTTM 701

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +    I   L   D +++       + ++  +     + F    +R   GR + G+ GI 
Sbjct: 702 DSWSIID--LKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAGIR 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+G +V + A+V     ++          SA   ++     +  +L             
Sbjct: 759 LAEGTKVATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPG----------- 807

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAVFP 846
                          +E G  K T    +    R+  G+R+    K  +    A V  +P
Sbjct: 808 ---------------TENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDTLIHAYVGYYP 852

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           +        V++ G+ + +P  ++R   R   G  + S 
Sbjct: 853 LQ------AVTEGGSNVELPKPDMR---RDASGTELVSL 882



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRT 812
           Y +   A         E +TS ++   V G            +    L + +  G  KR 
Sbjct: 634 YEEGKPALLNHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATPLAIGTRNGVVKRW 693

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +       +       +  +  + +   ++A  P  DND+++ +S   +L+     ++R 
Sbjct: 694 NFEAPTTMD-------SWSIIDLKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP 746

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
             R   G+     A+  +V +   + E  I    +E E+
Sbjct: 747 QGRTAGGMAGIRLAEGTKVATFAVVPEKSIEWHYEEGEN 785


>gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34]
 gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34]
          Length = 776

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 262/825 (31%), Positives = 398/825 (48%), Gaps = 82/825 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +    +DE  +    S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M  
Sbjct: 5   DITFQADEPAD----SLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQA 60

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  + K VK AR+ GEV+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DG
Sbjct: 61  MGLRADAKPVKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   +  LLD++   TVDF PNYDGS +EP +L AR P VL+NG  GI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGI 180

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
           AVGMAT IP HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+   + I   Y
Sbjct: 181 AVGMATEIPPHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA---- 297
            +GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K          
Sbjct: 241 ESGRGSLKVRARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTP 300

Query: 298 --------------DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNM 341
                          +RDES +     ++   +  + +    +  L  +TSL+S   +N+
Sbjct: 301 EQTQLKTTMLSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINL 360

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  L  IL+ ++ FR   V RRT++ L K  DR H+L G  + + N+DEV
Sbjct: 361 VMIGTDGRPRQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEV 420

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A  E                                LS+ Q   ILE+
Sbjct: 421 IRIIRESDEPKPALIE-----------------------------AFRLSDRQAEDILEI 451

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPR 516
           RL +L  L    I  EL  L  E  E   +L S + +   I +E+     +       PR
Sbjct: 452 RLRQLARLEAIKIEQELAKLRDEQAELDVLLKSETMMRRRIIKEIEQDAKQYSPEDKDPR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I E      +   ++ E + V VS  G+V        R ++  G   S    +  D 
Sbjct: 512 RTLIQEASRAAAE-VKVIDEPVTVIVSGKGWV--------RTRQGHGHDASQFTFKAGDN 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  ++L F S G VY   V  LP G  +  G  +  ++ L  G +I      
Sbjct: 563 LYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGG--RGDGVPVTTLIDLAAGTQIAHTFAG 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-D 695
             ++       ++ AT  GN    K+ D I   ++GK  + LD  D +L+     +E   
Sbjct: 621 AAEQR------MLIATAGGNGFVTKVGDMIGRQKAGKAFVTLDEGDTLLAPTPIGEECTH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ +   +  ++V +     GV  + L   + +  M  V             +
Sbjct: 675 VACFSANGRLLLAGLDEVKVLSA-GGRGVILMELEPKETL--MQAVAVGAPGLMISGIGV 731

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +      + ++G T  +       + +G   E R +E+K++   +
Sbjct: 732 RGGKVPPQKLAGKT--LIPYVGKRARKGKAIEPRLKEVKIEPVKV 774


>gi|313904178|ref|ZP_07837557.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470980|gb|EFR66303.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 744

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 256/733 (34%), Positives = 396/733 (54%), Gaps = 28/733 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M+++G  +++ Y K
Sbjct: 2   EEIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMLELGTYFDRPYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IYDAL  MAQD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 62  AARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEA 121

Query: 134 RLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RLQK      L DL K+ V+F PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IP 
Sbjct: 122 RLQKFTQEVYLKDLDKNVVNFVPNFDETEKEPEVLPVRVPNILVNGSDGIAVGMATSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D   A I N D+    LM+ I+GPDFPTG +++ +  +   Y +G G I IRG
Sbjct: 182 HNLGEVIDAAKAYIGNKDLTDRQLMKYIKGPDFPTGGIVVNKDDLPQIYESGSGKIRIRG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
              +EK    R+ +V+TEIPY +   N    L  +A LV  ++  +I D+ + S ++G R
Sbjct: 242 KVEVEKGKNGRQSLVITEIPYTMIGANIGKFLMDVAGLVENRQAPEIVDISNMSSKEGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+GA  + + N LY+ T L+  F VNM+A+ G +PE  +L  +L  F  F+ E+ 
Sbjct: 302 IVLELKKGADVERLKNLLYKKTRLEDTFGVNMLAVAGGRPETLSLKKVLDNFTDFQFELA 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ + +L K  ++  V  GL  AV  +D ++ I+R S + +  R  L     +  + K 
Sbjct: 362 TRKYQQMLQKELEKKEVQEGLIKAVDVIDLIIEILRGSKSQKQVRDCLTMGVTDGINFK- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                     +      +  ++ Q  AILE+RLA+L GL  D +  E      +I    +
Sbjct: 421 -------HKSSEKQAKELCFTQRQATAILEMRLAKLIGLELDALYKENEETIAKIARYEN 473

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    + G+I  +L  +K    TPR+T I      +  E      ++V  +   GYV+
Sbjct: 474 ILNDYDTMAGVIVDDLEQIKKNYATPRKTVIENAEAIVLAEPEEEETELVFLMDRFGYVR 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V  SVY   +      +            +F   +   V  ++  G ++  KV  +P  
Sbjct: 534 TVDTSVYDRNKEAADAENKY----------IFHCMSTDRVCVYTDNGMMHTIKVKDIPFT 583

Query: 610 SPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             + +G  + N+ + +   ER+    P  E +       +VF T  GNV+    S+F   
Sbjct: 584 KFRDKGTPIDNLCNYSADNERVVFAGPMAEVKQKK----LVFVTASGNVKIVSGSEFDVN 639

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +        D  D ++ V      + +++ ++ G  +RFP++ I     + +VGVRGIS
Sbjct: 640 RKVISATKLADDADSVVLVGYADAGDFLVIQSRDGYFLRFPMTEIPEK-KKTAVGVRGIS 698

Query: 729 LAKGDQVISMAIV 741
           L K D+  +  +V
Sbjct: 699 LGKDDEAEAAYLV 711



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           ++K++ ++ V+  G  K  S  +F +   + K I AT ++   +   LV     +  D +
Sbjct: 613 EVKQKKLVFVTASGNVKIVSGSEFDV---NRKVISATKLADDADSVVLVGY--ADAGDFL 667

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           ++ S  G  +R P+ EI    +   GV   S  KD+ 
Sbjct: 668 VIQSRDGYFLRFPMTEIPEKKKTAVGVRGISLGKDDE 704


>gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 373/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF EP +L  R P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKAMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIETDAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVSVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+      +   +   +  G+ + F +  ++ 
Sbjct: 634 GFVAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPVLPDAAQVACLSSGGRLLVFGMDEMKA 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAINAAG 722


>gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 773

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 246/769 (31%), Positives = 383/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L++ Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LMSAFGLTDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D+       ++ A+ +G     K+ D +   ++GK  M +DS    +  +        +
Sbjct: 621 VDQQ------LLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDSGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 722


>gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200]
          Length = 758

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/809 (29%), Positives = 403/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A +I     I 
Sbjct: 177 TGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+  R V  +E       +I++T +P+Q +   +LE+IA  ++ K++  +AD
Sbjct: 237 KIYESGRGSLRARAVYTVESG-----EIIITALPHQASSGKILEQIAGQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        D ++  L+  T L+  F VN+  L    +P    L 
Sbjct: 292 LRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + 
Sbjct: 352 TLLTEWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEP---KV 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L++ Q  AILEL+L  L  L    I  
Sbjct: 409 ELMAR--------------------------FSLTDKQAEAILELKLRHLAKLEEFKITA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV+      + +++  
Sbjct: 443 EQNELEAEREKLEQLLGSERRLKTLIKKELIQDGETYGDNRRSPIVQRHESRALTEQELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D      +  ++ + +F  
Sbjct: 503 PSEPVTVVLSEKGWV--------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    ++  GE +  ++   E++        + AT 
Sbjct: 555 SSGRAFATDSHTLP--SARSQGEPITTRFNMAPGETMQHVLMGEEEQ------CYLLATD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G       +D +  N++GK  + L +  + L+ +     +E  +L  T  G+ + F ++
Sbjct: 607 AGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLA 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +      + GI        D++++   ++ ++            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSETSV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN]
 gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN]
          Length = 774

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 254/750 (33%), Positives = 378/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M  MG+  N K VK AR+ 
Sbjct: 21  LTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGS +EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 AKLLLDEINQGTVDFMPNYDGSSEEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I+   LM+ I GPDFP GA I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKIEHAELMQHIAGPDFPGGAQIISSDAEISAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DL 299
           + +  + Q+V+TE+P       +LE+I E    K  +                      +
Sbjct: 261 ELARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQTKQTMLALLDAV 320

Query: 300 RDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES R     ++   + +  D    +N L  YTSL+S  S+NMV + G  +P +  L  
Sbjct: 321 RDESGRDAPVRLVFEPKSSRIDQTDFVNTLLAYTSLESNASLNMVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 --------------------------LMAAFGLSDRQAEDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L S S +  ++ +E+     +    RRT I +      +   +   
Sbjct: 472 LAELRDEKAKLEELLGSESAMKRLLIKEIEGDAKQYGDERRTLIQQEKRATFEARVVDEP 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 532 VT-VVVSQKGWV--------RALKGHGLDVAGFTFKAGDGLYAAFQCRTPDTLVAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +        +++      ++ A+ +G 
Sbjct: 583 RVYSVAVAMLPGG--RGDGVPVTSLIELESGSHLLHYYAASAEQA------LLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    +  +        I   +  G+ + F I  ++ 
Sbjct: 635 GFVAKVGDMVSRVKAGKSFMTIDAGAAPLKPMPMLPDATHIACLSSGGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    + +A 
Sbjct: 695 LSG-GGRGVTLMALDDKETLVQALSINNAG 723



 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 58/180 (32%), Gaps = 6/180 (3%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G +   GD + +       D           +  A   L  G  + +          G
Sbjct: 552 VAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESG 611

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             S          EQ +L  S  GFG      D     ++GK     D         L  
Sbjct: 612 --SHLLHYYAASAEQALLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGA----APLKP 665

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  + D   I  +S  G L+   ++E++  S   +GV + +    E +V    I  + +V
Sbjct: 666 MPMLPDATHIACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLVQALSINNAGVV 725


>gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris]
 gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris]
          Length = 751

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 257/806 (31%), Positives = 401/806 (49%), Gaps = 76/806 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I + +E  EK      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M +
Sbjct: 2   KKIPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSE 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D 
Sbjct: 58  LGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 117

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  G
Sbjct: 118 PKSFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  
Sbjct: 178 IAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAM 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI +R +   E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + DLR
Sbjct: 238 YESGNGSIKMRAIYAQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLR 292

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +     V+I        + +++ L+  T L+  + VN   +    KP    L+ I
Sbjct: 293 DESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLTI 352

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L
Sbjct: 353 LTEWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            L+E Q  AILE++L  L  L    +R EL
Sbjct: 410 ISR--------------------------FNLTERQAEAILEMKLRHLAKLEEIKLRGEL 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E       L+S S L  ++K+E+   +DE   PRR+ I+  E    +++ED +  
Sbjct: 444 DELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA +        +  +  D      +  T+  VLFF   
Sbjct: 504 EPITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGE 555

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY      LP  S + +G+ L   L+  +G     I+             V+ AT  G
Sbjct: 556 GKVYSLPGHALP--SARGQGEPLTGKLNPAEGILFEAIV------GGEPEQKVLLATDSG 607

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL--LTTKLGQCVRFPISAI 713
                K+ D    NR+GK  +KL     IL          +     T +G+ + F +  +
Sbjct: 608 YGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL 667

Query: 714 RVFAGRNSVGVRGISLAK----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +      +  I +AK     + ++ M ++   D+           + A +R  +   
Sbjct: 668 PELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS---------LTVHAGKRHFTLKG 718

Query: 770 EEITSLKNDSSVEGNISEERCQELKL 795
           E++T  K +    GN      Q +  
Sbjct: 719 EDLTHYKGERGRRGNRLPRGLQNVSQ 744



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 39/253 (15%)

Query: 663 SDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVF 716
            +F    RS  I       L   D +        E   ++ +K G  +  +      +  
Sbjct: 476 DEFGDPRRSPIITREDSQALKEEDIL------PNEPITVVLSKNGWVRAAKGHDVDGKEL 529

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + +     +  +LA+ +Q +           Y      +     Q   ++G       + 
Sbjct: 530 SYKAGDEFKAQTLARTNQQV--LFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGIL 587

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++ V G             EQ +L  ++ G+G      D  + NR+GK      +S+ +
Sbjct: 588 FEAIVGG-----------EPEQKVLLATDSGYGFIAKIEDLYVKNRNGKA--CIKLSENS 634

Query: 837 EIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TAKD 888
               ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +++
Sbjct: 635 ---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSRG-KGNKLISIPVAKAVSRE 690

Query: 889 ERVVSVERIRESE 901
           E +V ++ +  ++
Sbjct: 691 EYIVDMQVLTTND 703


>gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 767

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 260/741 (35%), Positives = 395/741 (53%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +DE       S  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDDT--TDENLNVPDLSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELKLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L ++ VDFR NYDG+  EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAAARYTEARMTLAAEALLEGLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+ + C+ +I  PD   D L+  + GPDFPTG  I+  +  I  
Sbjct: 179 GIAVGMATNIPPHNIAELCEACLHLIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIA+L++ K+I  + D+
Sbjct: 239 AYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    D++++ LYR + L+  FS+NM V ++G  P+  ++  +L
Sbjct: 299 RDESAEDVRIVLEPRSKNVEPDILMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R +V++RR+ + + K   R  VL GL IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRRDVLIRRSTHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +  W     +     + ++ Y     G   L+EVQ  AIL +RL  L  L   +++ E +
Sbjct: 416 REDWG----RTFTRAMSEADYVGPPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDED 531
           +L  E     D+L+S       I  ++   K +         RR++  E   + ++  E 
Sbjct: 472 ALMEERAGLDDLLNSVELQWSSIADQIRETKKQFGKDHPAGARRSQFAEAGEVEEVPLEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G++        RA          +  +D D    +F   T   +L 
Sbjct: 532 MIDREPITVVCSEMGWI--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLLA 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G  Y      LP G  +  G+ L  I+ L     +  +          +   ++ A
Sbjct: 584 FGSNGRFYTVSAANLPGG--RGMGEPLRLIVDLPNEAGLVDLFIHK------SGRKLLVA 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       D +   RSGK  + +   +  L  +  T  + + +  +  + + FP+ 
Sbjct: 636 SSAGDGFVVPEDDVVAQTRSGKQVLNVRGDNRALVCKPVTG-DSVAVVGENRKVLVFPLD 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR      G
Sbjct: 695 ELPEMG--RGKGVRLQKYKDG 713



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + +L  S  G G      D     RSGK +          +   V        D 
Sbjct: 625 IHKSGRKLLVASSAGDGFVVPEDDVVAQTRSGKQVLNVRGDNRALVCKPVT------GDS 678

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + +V +   ++  P++E+    R  KGV +      
Sbjct: 679 VAVVGENRKVLVFPLDELPEMGRG-KGVRLQKYKDG 713


>gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 375/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM+++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIREIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722


>gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6]
 gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6]
          Length = 773

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 245/769 (31%), Positives = 383/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L++ Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LMSAFGLTDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELETLRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +
Sbjct: 621 VDQQ------LLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 722



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVFPVNDND-QII 854
           +Q +L  S  GFG      D     ++GK     D       GA+ +A  PV  N  Q+ 
Sbjct: 622 DQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTID------TGAVPLAPMPVLPNATQVA 675

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +S  G L+   ++E++  S   +GV++ +    E +V    I  + +V
Sbjct: 676 CLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLVQALAIDPAGVV 724


>gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
 gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
          Length = 773

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 245/769 (31%), Positives = 384/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR+++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L++ Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LMSAFGLTDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELETLRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDI 696
            D+       ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +
Sbjct: 621 VDQQ------LLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 722


>gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010]
 gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010]
          Length = 746

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/725 (32%), Positives = 370/725 (51%), Gaps = 61/725 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +    + D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 6   DDLEQQPLRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALSKHKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+GS+D     AA RYTE
Sbjct: 66  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMDDPKSFAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL +LG+ T D+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 126 ARLAPYAQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMATDIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HNL EVV   + ++ +P + LD L+E I+GPDFPTGA I+     I+  Y TG GS+  R
Sbjct: 186 HNLREVVSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGSVKQR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              + E       +I++  +PYQV+ A +LE+IA  +  K++  +ADLRDESD +    +
Sbjct: 246 ASYNKEDG-----EIIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEHPVRL 300

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEV 368
           + + R    D+  +++ L+  T L+    VNM  +    +P+   L  +L  ++ +R E 
Sbjct: 301 VIVPRSNRVDIDSLMSHLFATTDLERSHRVNMNMIGMDGRPQVKNLRDMLIEWLGYRVET 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K  DR HVL GL IA  N+DEV+ IIR   +P+                 
Sbjct: 361 VRRRLQYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDPKAV--------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +++ Q  +ILELRL  L  L    IR E++ L  E K+  
Sbjct: 406 --------------MMERFSITDRQAESILELRLRHLAKLEEMKIRGEMDELSKERKQLE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS +RL  +I++EL +  ++    RR++IVE      ++  + +  E + + +S  G
Sbjct: 452 LLLSSDTRLKTLIRKELTADAEKFGDDRRSQIVERKASKALDATELLPTEPLTIVLSESG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +VK        A +      + +  R  D         ++  ++F    G  Y      L
Sbjct: 512 WVK--------AAKGHDVDPTSLNFRTGDRYLTSVKARSNQQIVFLDETGRSYSLSAHTL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   L      R  +++    D++      ++     G      L + +
Sbjct: 564 P--SARGQGEPLSGRLQSAPEVRFVSVLAVEADKT------ILLTNTAGYGFVTTLENLL 615

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK    L    +IL          + + + +  G+ + F  S I         GV
Sbjct: 616 AKNKAGKALFNLPKGAQILPPLLLEDQDNDQMAVASGDGRLLVFAASEIPTL--NKGKGV 673

Query: 725 RGISL 729
           R I++
Sbjct: 674 RLINI 678


>gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 256/806 (31%), Positives = 400/806 (49%), Gaps = 76/806 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I + +E  EK      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M +
Sbjct: 2   KKIPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSE 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D 
Sbjct: 58  LGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 117

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  G
Sbjct: 118 PKSFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  
Sbjct: 178 IAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAI 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI +R +   E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + DLR
Sbjct: 238 YESGNGSIKMRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLR 292

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +     V+I        + +++ L+  T L+  + VN   +    KP    L+ I
Sbjct: 293 DESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAI 352

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L
Sbjct: 353 LTEWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQP---KQGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            L+E Q  AILE++L  L  L    +R EL
Sbjct: 410 ISR--------------------------FNLTERQAEAILEMKLRHLAKLEEIKLRGEL 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E       L+S S L  ++K+E+   +DE   PR + I+  E    +++ED +  
Sbjct: 444 DELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDPRLSPIITREDSQALKEEDILPN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA +        +  +  D      +  T+  VLFF   
Sbjct: 504 EPITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGE 555

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY      LP  S + +G+ L   L+  +G     I+             V+ AT  G
Sbjct: 556 GKVYSLPGHVLP--SARGQGEPLTGKLNPAEGVLFEAIV------GGEPEQKVLLATDSG 607

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL--LTTKLGQCVRFPISAI 713
                K+ D    NR+GK  +KL     IL          +     T +G+ + F +  +
Sbjct: 608 YGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL 667

Query: 714 RVFAGRNSVGVRGISLAK----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +      +  I +AK     + ++ M ++   D+           + A +R  +   
Sbjct: 668 PELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS---------LTVYAGKRHFTLKG 718

Query: 770 EEITSLKNDSSVEGNISEERCQELKL 795
           E++T  K +    GN      Q +  
Sbjct: 719 EDLTHYKGERGRRGNRLPRGLQNVSQ 744


>gi|298253939|ref|ZP_06977526.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532082|gb|EFH71057.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 887

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 282/938 (30%), Positives = 457/938 (48%), Gaps = 140/938 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  +  Y+
Sbjct: 18  KEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSPDHAYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ T
Sbjct: 137 ARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+   R 
Sbjct: 197 HNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGAFTTRS 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +HIE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +DR    R+V
Sbjct: 257 TTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHNGTRIV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R  VV R
Sbjct: 317 IEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRRTVVRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +L++            
Sbjct: 377 RSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIK------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q + IL+LRL RLT + R ++  E + L  +I+E   IL
Sbjct: 425 --------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEELNQIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------------------- 526
           SS ++L  ++  ++ S   + DTPRRT +++   D                         
Sbjct: 471 SSEAKLDNVVIADMDSAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIKAVQSA 530

Query: 527 -------------------------MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                                          +  E   V +S  G + R  ++V      
Sbjct: 531 NKITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIARTSIAVLEHWNS 590

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-----IGSPQ--AR 614
                     +       +F  +T ++    +S G +    V  LP      G P     
Sbjct: 591 HNNNVFNTPCKT------MFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKPALLNH 644

Query: 615 GKALINILSLNQ------GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     +L+  Q      GER+ + + F   ++S N   +   T++G V+R        +
Sbjct: 645 GVKAQELLTSTQSTDPVRGERVVSAIAF---DASQNATPLAIGTRNGVVKRWNFEAPTTM 701

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +    I   L   D +++       + ++  +     + F    +R   GR + G+ GI 
Sbjct: 702 DSWSIID--LKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAGIR 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+G +V + A+V     ++          SA   ++     +  +L             
Sbjct: 759 LAEGAKVATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPG----------- 807

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAVFP 846
                          +E G  K T    +    R+  G+R+    K  +    A V  +P
Sbjct: 808 ---------------TENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDTLIHAYVGYYP 852

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +        V++ G+ + +P  ++R   R   G  + S
Sbjct: 853 LQ------AVTEGGSNVELPKPDMR---RDASGTELVS 881



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRT 812
           Y +   A         E +TS ++   V G            +    L + +  G  KR 
Sbjct: 634 YEEGKPALLNHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATPLAIGTRNGVVKRW 693

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +       +       +  +  + +   ++A  P  DND+++ +S   +L+     ++R 
Sbjct: 694 NFEAPTTMD-------SWSIIDLKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP 746

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
             R   G+     A+  +V +   + E  I    +E E+
Sbjct: 747 QGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWHYEEGEN 785


>gi|311742662|ref|ZP_07716471.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
 gi|311314290|gb|EFQ84198.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
          Length = 822

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 273/795 (34%), Positives = 388/795 (48%), Gaps = 57/795 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               EE ++ I    I +EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M  MG+
Sbjct: 7   TEPVEEFDEHIVDTDIREEMRASFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDDMGL 66

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR  G+VMG+ HPHG++AIYDAL R+ Q WS+R+ LI+G GNFGS D DPP
Sbjct: 67  RPDRGHVKSARPVGDVMGRLHPHGDSAIYDALVRLVQPWSMRVPLIDGHGNFGSPD-DPP 125

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+  AA  +   + +DTVDFRPNYDG   EPVVL A  PN+LVNG  GIAVG
Sbjct: 126 AAMRYTECRMDPAAQAMTASIDEDTVDFRPNYDGRETEPVVLPASLPNLLVNGASGIAVG 185

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNI  HNL EVV     +I +P+ DLD LM  I GPD PTG  I+G  G+++AYATG 
Sbjct: 186 MATNIAPHNLVEVVQALRHLIGHPEADLDDLMRFIPGPDLPTGGKIVGLDGVRDAYATGN 245

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS  +R  + +E+  G R+ IV++E+PY V    ++E + +LV+ K++  IADL++ +DR
Sbjct: 246 GSFKMRATARVEQV-GRRKGIVISELPYNVGPEKVIEAVKKLVQSKKLQGIADLKNLTDR 304

Query: 306 QG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                +VIE+K G   + IL QLYR+T +++ F +N VAL   +P    L  +L  ++  
Sbjct: 305 HSGLSIVIEVKNGFVPEAILEQLYRFTPMETSFGINAVALVDGQPRTLGLRQMLDVYLEH 364

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+ +    A DR H+L GL +A+ ++DEV+++IR S N   A+  L       
Sbjct: 365 RYDVVRRRSTFRRAMAADRLHLLEGLLLALVDIDEVIQLIRSSENRGEAKDRLRS----- 419

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q   IL L L RLT   R  + +E+  L   I
Sbjct: 420 ---------------------VFDLSEPQAEYILNLTLGRLTRYDRIVVESEMEELRRTI 458

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR---EDMVVT 541
           +    IL   + L G++  EL  +     TPRRT ++E           V    +     
Sbjct: 459 EALDAILGDETVLRGVVGDELAEMAATFGTPRRTILLESAGQTVTAATPVEVADDPCWAL 518

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G + R        +  G  G         D +      +    +   ++ G V + 
Sbjct: 519 LSSTGLLARTSDD----RPIGTDGGRAK----HDVIVSAVRTTARGEIGVVTAGGRVRRI 570

Query: 602 KVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            V  LP     A       G  +  ++ L+   R   +M F ED        +   T+ G
Sbjct: 571 GVLDLPALPATAGAPSLQGGVPVSEVVQLDD--RPLALMTFAEDVPG-----LALGTRQG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R K       NR     + L   D ++  V   T    +   T   Q + F   A+R
Sbjct: 624 VVKRVKPDHLS--NRDEWDLIGLADGDAVVGAVPLVTGTEQLAFVTSDAQLLHFGADAVR 681

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                    V G+ LA G  V++   V      +   +          +  S        
Sbjct: 682 PQGRGGGG-VAGVKLAPGASVVAFGAVAAPGTAHVVTVSGSASALPGTQAGSAKVSPFEL 740

Query: 775 LKNDSSVEGNISEER 789
                   G +   R
Sbjct: 741 YPPKGRATGGVRCHR 755



 Score = 41.4 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 94/312 (30%), Gaps = 32/312 (10%)

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L   +    G     IL  + G+ +T   P        ++      +  G + R   SD
Sbjct: 478 ELAEMAAT-FGTPRRTILLESAGQTVTAATPV----EVADDPCWALLSSTGLLART--SD 530

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-- 722
              I   G  A      D I+S    T   +I + T  G+  R  +  +           
Sbjct: 531 DRPIGTDGGRAKH----DVIVSAVRTTARGEIGVVTAGGRVRRIGVLDLPALPATAGAPS 586

Query: 723 ---GVRGISLAKGDQ--VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              GV    + + D   +  M                +        L + D  ++  L +
Sbjct: 587 LQGGVPVSEVVQLDDRPLALMTFAEDVPGLALGTRQGVVKRVKPDHLSNRDEWDLIGLAD 646

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +V G +       L    + +  V+         +   R   R G G+    ++    
Sbjct: 647 GDAVVGAVP------LVTGTEQLAFVTSDAQLLHFGADAVRPQGRGGGGVAGVKLAPGAS 700

Query: 838 I---GALVA-----VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +   GA+ A     V  V+ +   +  +  G+    P        RAT GV      K E
Sbjct: 701 VVAFGAVAAPGTAHVVTVSGSASALPGTQAGSAKVSPFELYPPKGRATGGVRCHRLLKGE 760

Query: 890 RVVSVERIRESE 901
             V +  + + E
Sbjct: 761 DAVILAWVGDGE 772


>gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894]
          Length = 738

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 373/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  S  GFG      D     ++GK     D    +    L  +  + D  Q+  
Sbjct: 621 AEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPVLPDASQVAC 676

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S  G L+   ++E++  S   +GV++ +    E +V    I  + +V
Sbjct: 677 LSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLVQALAIDAAGVV 724


>gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668]
 gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668]
          Length = 772

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 373/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  S  GFG      D     ++GK     D    +    L  +  + D  Q+  
Sbjct: 621 AEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPVLPDASQVAC 676

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S  G L+   ++E++  S   +GV++ +    E +V    I  + +V
Sbjct: 677 LSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLVQALAIDAAGVV 724


>gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b]
 gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a]
 gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98]
 gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14]
 gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91]
 gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210]
 gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC
           13177]
 gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112]
 gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215]
 gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
 gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b]
 gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a]
 gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
          Length = 772

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 373/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  S  GFG      D     ++GK     D    +    L  +  + D  Q+  
Sbjct: 621 AEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPVLPDASQVAC 676

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S  G L+   ++E++  S   +GV++ +    E +V    I  + +V
Sbjct: 677 LSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLVQALAIDAAGVV 724


>gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
 gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
          Length = 768

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 259/741 (34%), Positives = 394/741 (53%), Gaps = 36/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  D   +    S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSD--LLDDPNMQPEAVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L +D VDFR NYDG+ +EP+VL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPIVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E++D C+ +I +PD   + L+  I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNIAELIDACLHLIKSPDARDETLLTYIPGPDFPTGGVIVEPPESIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++E+IAEL++ +++  +AD+
Sbjct: 239 AYLTGRGAFRLRCKWALEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    +V++  +YR + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESADDVRLVLEPRSKNVDPEVLMGMMYRNSELELRFSLNMNVLIDGVTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR+EV++RR+ + + K   R  VL GL +A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDFRQEVLLRRSAHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +  W  +  + + +    S       G   L++VQ  AIL +RL  L  L   ++R E +
Sbjct: 416 REDWGRTVPRAMSEADYVSPPPTDEPG---LTDVQAEAILNMRLRSLRRLEEMELRAERD 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEG--LLDMEDED 531
           +L  E     D+L   S     +  +L  V+           RRT+  E   + ++  E 
Sbjct: 473 ALMQERAGLEDLLEDVSLQWAAVADQLKEVQKTFGKTHPIGARRTKFAEAGSVEEVPLEA 532

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+++ +   +  +          +  +D D    +F   T   +L 
Sbjct: 533 MIDREPITVVCSQMGWIRAMTGHLDLS--------RELKFKDGDAPRFMFHAETTDRILV 584

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F S G  Y      LP G  +  G+ L  ++ L     I  ++             ++ A
Sbjct: 585 FGSNGRFYTISASNLPGG--RGMGEPLRLMVDLPNEAAIVDLLIHK------PGRKLLVA 636

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + I   RSGK  + L       SV      + +       + + F + 
Sbjct: 637 STAGDGFIVPEDEVIAQTRSGKQVLNLKDPAR-ASVCRPVTGDHVACVGDNRKVLVFSLD 695

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR      G
Sbjct: 696 ELPELG--RGKGVRLQKYKDG 714


>gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
 gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
          Length = 762

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 251/805 (31%), Positives = 414/805 (51%), Gaps = 70/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I      I+  Y  GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +FF S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAEGLSYKSGDNYLAHARGKSNQQAVFFGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   EDE  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSSIRQVI-MGEDEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K S+ +  NRSGK  + L +  E+++ +T      ++IL  T  G+ + FPI  +   A 
Sbjct: 612 KGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEILAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I      + ++V+S  + L   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKEREEVLSHLMALPQGASL--------TLYAGKRKLGLKPADLENF 723

Query: 776 KNDSSVEGNISEERCQELKLKEQFI 800
           + +    G++     Q +   E  +
Sbjct: 724 RGERGRRGSLLPRGLQRVTRIEIEM 748



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   EQ  L  S+ G+G      +    NRSGK +     +        +A  
Sbjct: 585 SSIRQVIMGEDEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAKG-KGNKIINIPAAKAKEREEVLS 693


>gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
 gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/809 (31%), Positives = 412/809 (50%), Gaps = 77/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDITY-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD++PN+DG+ +EP  L +R P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNGV 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVGMAT+IP HN  EV +  VA+ID+P +DLD L+E ++GPD+PT A I+     +K
Sbjct: 174 TGIAVGMATDIPPHNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVELK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  GRGSI +R   H      D   IV+T +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 234 KLYRDGRGSIKMRARWH-----KDNGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDD 288

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      + ++N L+  T L+  + VN+  +    +P+   L+
Sbjct: 289 LRDESDHENPTRIVIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDGRPQVKGLL 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR +Y L+K   R H+L GL +A  N+DEV+ IIR    P   ++
Sbjct: 349 KILTEWLEFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEP---KK 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LSE Q  AILE++L +L  L    IR 
Sbjct: 406 ELMSR--------------------------FGLSEKQAEAILEIKLRQLAKLEEIKIRG 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E ++   +L S  R+  ++K+E+L+  ++    RR+ +VE      M + D I
Sbjct: 440 EQDELNKEREQLEKVLGSERRMNTLLKKEILADAEKYGDERRSPLVERAEAKAMTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      + +  +  D         ++  V+F  
Sbjct: 500 PSEPITVVLSEKGWI--------RHAKGHDVDPTSLSYKSGDSYLASARGKSNQPVVFIG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L++  G  +  +M         N+  V+ A+ 
Sbjct: 552 SDGRSYALESHTLP--SARSQGEPITGRLNITAGTAVRHVMM------GENDNLVLMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     K  D +  NRSGK  + L    E++  +     + +DI+  T  G+ + FP+ 
Sbjct: 604 AGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVAITNEGRMLVFPVK 663

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +          +  I        +++++   V+   A           + A +R +S  
Sbjct: 664 ELPQLGKGKGNKIINIPSARAKAREELLTQLFVIPQGASV--------TLHAGKRKLSLK 715

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             +I + + +    G++     Q +   E
Sbjct: 716 PTDIDNFRGERGRRGSMLPRGLQRVTAIE 744



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 67/198 (33%), Gaps = 17/198 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +   +     G   ++ A+G     +  +      Y
Sbjct: 498 LIPSEPITVVLSEKGWIRHAKGHDVDPTSLSYKSGDSYLASARGKSNQPVVFIGSDGRSY 557

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +   +  +L  S+ G+
Sbjct: 558 ALESHTLPSARSQGEPITGRLNITAG-----------TAVRHVMMGENDNLVLMASDAGY 606

Query: 809 GKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           G      D    NRSGK + +    +++     +  +    + D I+ ++++G ++  PV
Sbjct: 607 GFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADI----ETDDIVAITNEGRMLVFPV 662

Query: 868 NEIRIASRATKGVVIFST 885
            E+    +  KG  I + 
Sbjct: 663 KELPQLGKG-KGNKIINI 679


>gi|238924636|ref|YP_002938152.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876311|gb|ACR76018.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 751

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 262/761 (34%), Positives = 411/761 (54%), Gaps = 31/761 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
               ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 138 A-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                 L DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN G
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   I
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEI 254

Query: 257 EKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           EK    ++++V+TEIPY +   N    L  +  LV  K   DI D+ ++S ++G R+V+E
Sbjct: 255 EKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLE 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ 
Sbjct: 315 LKKGADVEALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKY 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K     
Sbjct: 375 ETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFK----- 429

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              S  +      +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  
Sbjct: 430 ---SKASEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEH 486

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RS +  +I +EL + + E    RRT +      +  +  +   D+V+ +   GYVK V  
Sbjct: 487 RSSMAKVIMKELKAFRKEYARDRRTELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDT 546

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y   +      + ++++          V     +  F++ G ++  KV  LP G  + 
Sbjct: 547 STYDRNKDTADAENKLILK----------VKNIDKLCIFTNNGNMHLVKVLDLPYGKFRD 596

Query: 614 RGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N+ + +   E I  I P  + E       ++F TK   ++    ++F+   ++ 
Sbjct: 597 KGTPIDNVSNYDSSKEDIVFIAPLMDVEK----HKLIFGTKSAMIKLVDGAEFVVTRKTS 652

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A KL   DE+L V+  ++   +++ +K    +R           + +VGVRG+ L + 
Sbjct: 653 -QATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCG-TIPEKKKAAVGVRGMRLDRE 710

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           D++    I L  D D  E     K ++  R  I+    +  
Sbjct: 711 DEL--TDIYLLNDQDEKEVEVKGKQVALHRLHIANRDTKGV 749



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           + +++  ++  ++    K     +F ++ ++ +  +  D  +      L+ V  +++N  
Sbjct: 621 MDVEKHKLIFGTKSAMIKLVDGAEFVVTRKTSQATKLMDDDE------LLFVDMLSENAT 674

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++ S K   +R+    I    +A  GV      +++ +  +  + + +  +
Sbjct: 675 MVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLNDQDEKE 726


>gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a]
 gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas
           maltophilia K279a]
          Length = 747

 Score =  501 bits (1290), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/743 (32%), Positives = 372/743 (50%), Gaps = 61/743 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K
Sbjct: 10  HGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D     AA RYTE
Sbjct: 70  SARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNPD  +  L E ++GPD+P+ A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYETGNGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              + E  +     IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 250 ATFNKEANN-----IVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R     AD ++  L+  T L+  + VN+  +    +P+   L  +L  ++ FR   
Sbjct: 305 VLVPRSNRVDADQLMGHLFATTDLERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A   L+ R        
Sbjct: 365 VTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA---LIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q   ILE +L +L  L    IR E + L  E ++ L
Sbjct: 414 ------------------FGLSEEQAEYILETKLKQLARLEEMKIRGEQDELAKEREKIL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S+++L  +I+ EL +   +    RR+ +V  +    +++ + +  E M V +S  G
Sbjct: 456 GILDSKAKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      S +  RD D +       +   V F  S G  Y   V  L
Sbjct: 516 WI--------RAAKGHDVDASALSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L    S   G    T+       S+  +   V A+ HG     +  + I
Sbjct: 568 P--SARGNGEPLTGRFSPAAGTSFVTL------ASAEPDARFVLASSHGYGFVTRFENLI 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L S   +L+         + I+  T  G  +    + +          +
Sbjct: 620 GRNKAGKAMLNLSSGSSVLTPSMVANVATDRIVAVTSSGNLLAIAANDLPELDKGKGNKI 679

Query: 725 RGISLAK--GDQVISMAIVLHAD 745
             I  AK   ++V+++  +    
Sbjct: 680 IEIPKAKLATERVVAIVAISPGQ 702


>gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9]
 gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 772

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 373/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKEALVQALAIDAAG 722


>gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 791

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 259/818 (31%), Positives = 395/818 (48%), Gaps = 78/818 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H     +  E G  S+++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF M +M
Sbjct: 23  HDPKPIDLNEDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSMSEM 82

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQ +SLR  LI+GQGNFGS DGD
Sbjct: 83  GLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGD 142

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K A  LL ++ + TVDF PNYDGSFQEP +L AR P VL+NG  GIA
Sbjct: 143 GAAAMRYTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIA 202

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYA 242
           VGMAT IP+HNL EV    VA++ +P +    L+EI+ GPD+P G  I+     I   Y 
Sbjct: 203 VGMATEIPSHNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQIYE 262

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD---- 298
           TGRGSI +R    IE+ +  + QIVV E+P   +   +L++I E+   K  V        
Sbjct: 263 TGRGSIKVRARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTLTLE 322

Query: 299 --------------LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMV 342
                         +RDES +     ++   +  + DV   +N L  +TSL+S   +N+V
Sbjct: 323 QNNLKSTILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLV 382

Query: 343 AL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
            + N  +P +  L  IL  ++ FR   V RRT++ L+K ++R H+L G    + N+D+V+
Sbjct: 383 MIGNDDRPRQKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNIDKVI 442

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           +IIR S  P+                                     LS+ Q   IL++R
Sbjct: 443 KIIRNSDEPKA-----------------------------DLIKEFKLSDRQAEDILDIR 473

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L +L  L    I  EL  L  E  +   +L S + L   I +E+ S   +    RRT I 
Sbjct: 474 LRQLARLEGIKIEQELKELKTERDDLEGLLQSDTALRKRIIKEIESDMKDFGDDRRTLIQ 533

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E    + +   ++ E + V VS  G+V        R ++      +    +  D +   F
Sbjct: 534 EDKRAVAE-TKVIDEPVTVIVSQKGWV--------RVRQGHEHDPTQFSFKAGDALYATF 584

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V T   +  F S G VY   V  LP    +  G  L + ++L  G ++        D+ 
Sbjct: 585 EVRTVDVIQGFGSDGRVYTVPVSELPGA--RGDGSPLTSFVNLASGSQMVAYYAGQSDD- 641

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM----KLDSRDEILSVETCTQENDIL 697
                 V+ +TK G      ++D    N++GK  +    K+     + + +       + 
Sbjct: 642 -----LVLLSTKAGFGFLANVADMTTRNKAGKSFLSMDAKVPGDAPLGAAKVRVGMKQVA 696

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             ++  + + FP+  ++        GV  + L   + + S   V    A Y         
Sbjct: 697 CLSEASKLLVFPLDELKRLPT-GGKGVILMGLDDNEFLASAIAVGPDGATYSGAG----- 750

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            + +   +  D + + S   + + +G+  E R ++ KL
Sbjct: 751 RAGKPTELGLDAKTLKSFAGNRARKGHFVEPRLKDGKL 788



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 115/345 (33%), Gaps = 16/345 (4%)

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV     R Q R  K ++ + + +      L   +    +    +      + +    + 
Sbjct: 406 RVTTVTRRTQHRLDKVKNRMHILEGRLTVLL---NIDKVIKIIRNSDEPKADLIKEFKLS 462

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA     I +  L + E I       E ++  ++L  +  +     +R        + 
Sbjct: 463 DRQAEDILDIRLRQLARLEGIKIEQELKELKTERDDLEGLLQSDTALRKRIIKEIESDMK 522

Query: 670 RSGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             G     L   D+    ET    E   ++ ++ G                   G     
Sbjct: 523 DFGDDRRTLIQEDKRAVAETKVIDEPVTVIVSQKGWVRVRQGHEHDPTQFSFKAGDA--- 579

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L    +V ++ ++    +D       +  +   R    GD   +TS  N +S    ++  
Sbjct: 580 LYATFEVRTVDVIQGFGSDGRVYTVPVSELPGAR----GDGSPLTSFVNLASGSQMVAYY 635

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             Q     +  +L  ++ GFG   +  D    N++GK   + D     +     A   V 
Sbjct: 636 AGQ----SDDLVLLSTKAGFGFLANVADMTTRNKAGKSFLSMDAKVPGDAPLGAAKVRVG 691

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              Q+  +S+   L+  P++E++      KGV++     +E + S
Sbjct: 692 MK-QVACLSEASKLLVFPLDELKRLPTGGKGVILMGLDDNEFLAS 735


>gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223]
 gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223]
          Length = 758

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 396/796 (49%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P +DL+ LM  + GPD+PT A +I     I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +     D  +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VV+        D ++  L+  T L+  F VN+  L    +P    L  +L  ++ FR + 
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLTEWLEFRVDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + ELM R        
Sbjct: 365 VKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  +ILEL+L  L  L    I  E N L  E ++  
Sbjct: 414 ------------------FSLSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S  RL  +IK+EL+   +     RR+ IV       + +++    E + V +S  G
Sbjct: 456 QLLGSERRLKTLIKKELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D      I  ++ + +F  S G  +      L
Sbjct: 516 WV--------RCAKGHDIDPLSLSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   ED+        + AT  G       +D +
Sbjct: 568 P--SARSQGEPITTRFNMAPGETMQHVLMGEEDQ------CYLLATDAGYGFICSYNDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  + L+ +     +E  +L  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ +D            + A +R ++    ++   + +   
Sbjct: 680 IGIPTERAKNREELMTHLQLVPSDTPV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 764

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/757 (31%), Positives = 385/757 (50%), Gaps = 66/757 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ +EPVVL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  EV   C  ++DNP+  LDALM  I+GPD+PT A +I  R  I+
Sbjct: 177 TGIAVGMATDIPPHNAREVAYACAELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GSI  R V + E        IV+T +P+Q + A ++E+IA  +  K++  + D
Sbjct: 237 KIYETGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L+  + VN+  L    +P+  TL 
Sbjct: 292 LRDESDHENPTRLVIIPRSNRVDMEALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR +Y L+K   R H+L GL +A  N+DEV+ IIR    P     
Sbjct: 352 MILSEWIIFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEP----- 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            +SE Q  AILEL+L  L  L    +R 
Sbjct: 407 ------------------------GKVMVERFNISETQAEAILELKLRHLAKLEEFKLRA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L IE  +   +L S  RL  ++K+ELL+  ++    RRT +VE    + + +++  
Sbjct: 443 EQDELAIERDKLELLLGSERRLNTLLKKELLADAEKYGDDRRTPLVERASAVALTEKELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      +G+  +  D         ++   +F S
Sbjct: 503 PSEPVTVILSDKGWV--------RAAKGHDVDVAGLSYKAGDGYLAHACGRSNQQAVFLS 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  Y  +   LP  S +++G+ L    +L  GE +  ++   E E        +  + 
Sbjct: 555 TLGRTYALEAHTLP--SARSQGEPLTGRFALGAGEEVRHLVMGNEGEP------YLICSD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G        D I  N++GK  + +     +++ +     + +  +  +  G+ + FP++
Sbjct: 607 AGYGFVCTYDDLIGKNKNGKALLTVPEGGLVMAPQKIGSPETDLCMAISNEGRMLLFPLN 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            + V        +  I    +   ++ + MA ++   
Sbjct: 667 TLPVLGKGKGNKLISIPSARVKAREEFMVMAAIIPQG 703



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 27/193 (13%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD  ++ A                 +      L S  ++    
Sbjct: 518 RAAKGHDVDVAGLSYKAGDGYLAHACGRSNQQAVFLSTLGRTYALEAHTLPSARSQG--E 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E R   +  + +  L  S+ G+G   +  D    N++GK +       
Sbjct: 576 PLTGRFALGAGEEVRHLVMGNEGEPYLICSDAGYGFVCTYDDLIGKNKNGKALLTV---- 631

Query: 835 INEIGALVAV---FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               G LV         + D  + +S++G ++  P+N + +  +           K  ++
Sbjct: 632 --PEGGLVMAPQKIGSPETDLCMAISNEGRMLLFPLNTLPVLGK----------GKGNKL 679

Query: 892 VSV--ERIRESEI 902
           +S+   R++  E 
Sbjct: 680 ISIPSARVKAREE 692


>gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
 gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
          Length = 813

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 259/782 (33%), Positives = 386/782 (49%), Gaps = 73/782 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       E +    S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MSDTTTPP--ELDPNDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VD+R NYDG+  EPVVL A++PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLEGLNENAVDYRENYDGTLTEPVVLPAQFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+ D C+ +I  PD   + L+  + GPDFPTG VI+     I N
Sbjct: 179 GIAVGMATNIPPHNIAELCDACIHLIKTPDARDETLLNYVPGPDFPTGGVIVEPPENIAN 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E       QIVVTEIPYQV K+ ++EKIAEL++ K+I  +AD+
Sbjct: 239 AYRTGRGSFRLRCRWEVEDLGRGAWQIVVTEIPYQVQKSKLIEKIAELIQAKKIPILADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      ++    +     V++  L+R + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESAEDVRMIIEPRSKNVDPAVLMGMLFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+++ ++K   R  VL GL  A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDHRREVLQRRSRHRMDKIDHRLEVLQGLITAFLNLDRVIEIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTM------------------------------- 447
              W+      L   +D+++Y     G                                 
Sbjct: 416 YEDWSRVHQDTLARAMDEAAYISPLAGVDVSKLAVIADAEAQATGVLTESGDTRAVPHSY 475

Query: 448 -----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 LS+VQ  AIL +RL  L  L  D +  E ++L  E     D+L +       I 
Sbjct: 476 AGRENGLSDVQAEAILNMRLRSLRRLEEDALVKERDTLMSERAGLEDLLDNEDLQWTTIA 535

Query: 503 QELLSVKDELDTP----------RRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            +L + K +              R +       + D+  E  I RE + V  S +G++  
Sbjct: 536 DQLRATKKQFGKDWVIDGIKRGQRLSTFETAGEVEDVPIEAMIDREPITVVCSQMGWI-- 593

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA          +  +D D    +F   T   +L F S G  Y      LP G 
Sbjct: 594 ------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGG- 646

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L  ++ L    +I ++              ++ A+  G+       + +   R
Sbjct: 647 -RGMGEPLRLMVDLPNEVQIVSLFI------HQPGRKLLVASSAGDGFVVPEDEVVAQTR 699

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGK  + +        V      + +    +  + + F +  +         GVR     
Sbjct: 700 SGKQVLNVRGDGVAALVCHPVSGDSVATVGENRKVLVFGLDELPEMG--RGKGVRLQKYK 757

Query: 731 KG 732
            G
Sbjct: 758 DG 759



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 10/98 (10%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--N 850
           +    + +L  S  G G      +     RSGK +        N  G  VA    +    
Sbjct: 670 IHQPGRKLLVASSAGDGFVVPEDEVVAQTRSGKQVL-------NVRGDGVAALVCHPVSG 722

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           D +  V +   ++   ++E+    R  KGV +      
Sbjct: 723 DSVATVGENRKVLVFGLDELPEMGRG-KGVRLQKYKDG 759


>gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas
           albilineans]
          Length = 747

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 245/742 (33%), Positives = 382/742 (51%), Gaps = 61/742 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M ++G+    K  K
Sbjct: 10  HGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D     AA RYTE
Sbjct: 70  SARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ TVD+ PN+DG+  EP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HNL E+V   + ++D+PD  +  L E +RGPD+P+ A I+     ++  YATG GS+  R
Sbjct: 190 HNLNEIVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADLRTIYATGHGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IVVT +PYQV+ + ++E+IA+ +R K++  + D+RDESD      V
Sbjct: 250 ATYEKENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R     A+ ++  L+  T L+  + +N+  +    +P+   L  +L+ ++ FR + 
Sbjct: 305 VLVPRSNRVDAEHLMGHLFATTDLERSYRINLNVIGLDGRPQVKNLKTLLEEWLRFRSDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRR  + L K   R H+L GL +A  NLDEV+RIIR    P+ A   L+ R        
Sbjct: 365 VVRRLNHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPA---LIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE QT  ILE RL +L  L    IR E ++L  E ++  
Sbjct: 414 ------------------FALSEEQTDYILETRLRQLARLEEMKIRGEQDALAKEREQLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L+S+++L  +IK EL++   +    RR+ +V  E    +++ + +  E M + +S  G
Sbjct: 456 AVLASKTKLKKLIKDELIADAKKFGDARRSPLVQREAAQAIDETELVPSEPMTIVMSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      +G+  RD D +       +   V F  S G  Y      L
Sbjct: 516 WI--------RAAKSHDVDPAGLAYRDGDSLLAAVRGRSTQQVAFLDSEGRAYSTLAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L    S   G        F    +  N+  VV A+ HG     +  +  
Sbjct: 568 P--SARGNGEPLTGRFSPAAG------AAFQALATGENDTRVVLASSHGYGFITRFENLT 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L    ++L+  T      + I+  T  G  + FP++ +          +
Sbjct: 620 SRNKAGKAMLNLTPNAKVLAPATVGNADTDRIVAVTSAGHLLAFPVADLPELDKGKGNKI 679

Query: 725 RGISLAK--GDQVISMAIVLHA 744
             I  AK   ++V+++A V   
Sbjct: 680 IDIPKAKLGTERVVAIAAVTPG 701



 Score = 45.7 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  ++  S  G+G  T   +    N++GK +     +      A V      D D+I
Sbjct: 595 GENDTRVVLASSHGYGFITRFENLTSRNKAGKAMLNLTPNAKVLAPATVG---NADTDRI 651

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----DERVVSVERI 897
           + V+  G L+  PV ++    +  KG  I    K     ERVV++  +
Sbjct: 652 VAVTSAGHLLAFPVADLPELDKG-KGNKIIDIPKAKLGTERVVAIAAV 698


>gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185]
 gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195]
 gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185]
 gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195]
 gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678]
          Length = 758

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 240/796 (30%), Positives = 396/796 (49%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT A +I     I   Y +GRGS+  R
Sbjct: 190 HNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADIAKIYESGRGSLRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +     D  +I++T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VV+        D ++  L+  T L+  F VN+  L    +P    L  +L  ++ FR + 
Sbjct: 305 VVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLTEWLEFRVDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   + ELM R        
Sbjct: 365 VKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEP---KAELMAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  +ILEL+L  L  L    I  E N L  E ++  
Sbjct: 414 ------------------FSLSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            +L S  RL  +IK+EL+   +     RR+ IV       + +++    E + V +S  G
Sbjct: 456 QLLGSERRLKTLIKKELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D      I  ++ + +F  S G  +      L
Sbjct: 516 WV--------RCAKGHDIDPLSLSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   ED+        + AT  G       +D +
Sbjct: 568 P--SARSQGEPITTRFNMAPGETMQHVLMGEEDQ------CYLLATDAGYGFICSYNDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  + L+ +     +E  +L  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSLEALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ +D            + A +R ++    ++   + +   
Sbjct: 680 IGIPTERAKNREELMTHLQLVPSDTPV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 751

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/730 (32%), Positives = 381/730 (52%), Gaps = 58/730 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++++    +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MTTESINYEGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+VD    
Sbjct: 61  NATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAV
Sbjct: 121 FAAMRYTESRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYAT 243
           GMAT+IP HN+ E+ D  V ++DNP   LD L+ +++GPDFPT A I+  +  I+  Y  
Sbjct: 181 GMATDIPPHNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQL 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI +R     E       +IV++ +P+Q + + ++ +IAE +  K++  + D+RDE+
Sbjct: 241 GRGSIKMRATWKKEDG-----EIVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDEA 295

Query: 304 DRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360
           D +    ++ + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  
Sbjct: 296 DHENPVRIVLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILTE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +++FR   V RR +Y LNK   R H+L GL IA  N+DEV+ IIR+   P   + ELM R
Sbjct: 356 WLSFRRTTVTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEP---KAELMAR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q  AIL LRL  L  L   +++ E   L
Sbjct: 413 --------------------------FNLSDEQAEAILNLRLRHLAKLEEHELQAEQAEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             E     +IL S  RL  ++K+E+        +PRR+ +VE      + + + +  E +
Sbjct: 447 EKERSSLEEILGSERRLNTLLKKEIQQDAKIYASPRRSPLVERAEAKAIAENEMLPTEPV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S +G+V+         Q        G+  +  D         ++ + +F  S G  
Sbjct: 507 TVILSEMGWVRCAKGHDIDPQ--------GLSYKAGDKYLAHAYGKSNQAAVFIDSTGRS 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      LP  S +++G+ L   L+L  G  I  ++   ED+       ++ A+  G   
Sbjct: 559 YALDPLTLP--SARSQGEPLTGKLTLPAGATIDQLLIENEDQP------LLMASDAGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717
             K +D I  N++GK  + L    ++L   T      +L+  T  G+ + FP   +   +
Sbjct: 611 ICKFADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFPAQDLPELS 670

Query: 718 GRNSVGVRGI 727
                 +  I
Sbjct: 671 KGKGNKIVTI 680


>gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344]
 gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1]
 gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229]
 gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247]
 gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
 gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344]
 gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1]
 gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229]
 gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247]
 gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
          Length = 772

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 373/750 (49%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ 
Sbjct: 20  LTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 80  GDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL EV
Sbjct: 140 AKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I +P +    LM ++ GPDFP G  I+     I  AY TGRGS+ +R    IE
Sbjct: 200 AAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
             +  + Q+VVTE+P   +   +LE+I EL   K                         +
Sbjct: 260 DLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAV 319

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++   +  + D    +N L  +TSL+S  ++N+V +    +P +  L  
Sbjct: 320 RDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQRGLAS 379

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +V FR+  V RR ++ L K  DR H+L G  I   N+DEV+RIIR +  P+ A   
Sbjct: 380 ILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAA--- 436

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E Q   ILE+RL +L  L +  I  E
Sbjct: 437 --------------------------LISAFGLTERQADDILEIRLRQLARLEKIKIEKE 470

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L++ S +  ++ +E+ +   +    RRT I +      +   +   
Sbjct: 471 LEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERRTLIQQEKRATFEAKVVDEP 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V VS  G+V        RA +  G   +    +  D +   F   T  +++ + S G
Sbjct: 531 VT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGLYAAFQCRTPDTLIAWGSTG 581

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +      P ++       ++ A+ +G 
Sbjct: 582 RVYSVAVQVLPGG--RGDGVPVTSLIELESGSHLLHYYAAPAEQP------LLLASSNGF 633

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D     L+      + + +   +  G+ + F +  ++ 
Sbjct: 634 GFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQVACLSSGGRLLVFGMDEMKT 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 694 LSG-GGRGVILMALDAKETLVQALAIDAAG 722



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  S  GFG      D     ++GK     D    +    L  +  + D  Q+  
Sbjct: 621 AEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPVLPDASQVAC 676

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S  G L+   ++E++  S   +GV++ +    E +V    I  + +V
Sbjct: 677 LSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLVQALAIDAAGVV 724


>gi|302670819|ref|YP_003830779.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
 gi|302395292|gb|ADL34197.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
          Length = 745

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 245/727 (33%), Positives = 384/727 (52%), Gaps = 27/727 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D MQ S++ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 2   EDRIIKTEYSDIMQKSFIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGLRYDRPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYD L  M QD+   L L++G GNFG+++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYDCLVVMTQDFKKILPLVDGHGNFGNIEGDSHAAMRYTE 121

Query: 133 CRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L+DL K+ VDF PN+D + +EP VL  + PN L+NG  GIAVGMAT+ P
Sbjct: 122 ARLSKITQENFLEDLDKNVVDFVPNFDETEREPSVLPVKIPNFLINGSEGIAVGMATSTP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  +A + +  +    LM+ I+GPDFPTG +++ +  +   Y TG G I IR
Sbjct: 182 PHNLAEVIDAEIAFMQDDTLTTKDLMKYIKGPDFPTGGIVINKDELLEIYETGVGKIRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPY---QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G    EK       +V+TEIPY    +     +  +AEL  +K   DI D+ ++S ++G 
Sbjct: 242 GKVETEKGKNGHINLVITEIPYTMIGMGIGKFMSDVAELAEKKITNDIIDISNQSSKEGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+  + +   N LY+ T L+  F VNM+A++  +PE  +L  I++A   F+ E 
Sbjct: 302 RIVIELKKDTNVENFTNLLYKKTKLEDTFGVNMLAIDNGRPETMSLREIMRACADFQFET 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K +D+  +  GL  A   +D V+ I+R S +   A+  L+       + K
Sbjct: 362 ATRKYTTLLKKEQDKKEIQEGLIKACNVIDLVIEILRGSKDRAMAKNCLVNGETEGINFK 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   S  +      +  +E Q  AILE+RL +L GL  + +  E       I +  
Sbjct: 422 --------SRESKAMAAQLLFTEAQADAILEMRLYKLIGLELEALVKEHEQTVANIYKYE 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +   +  +I+ +L  +K E    R+T I      + +E  +   D+   +   GY 
Sbjct: 474 DILENHDSMAMVIQSDLNKIKKEFKADRKTVIDNRETAVYEEKPVEEMDVAFIMDRFGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   +   +                FI+     V FF++ G ++  K   LP 
Sbjct: 534 KTIDASTYEKNKETIQAEFKYS----------FIMKNTGKVCFFTNTGNLHTVKAMDLPQ 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ + +   + T IM     +S  N   ++F TK   ++     +F  +
Sbjct: 584 GKMRDKGIPIDNVSNFDT-AKETIIMAAS--QSDLNLYRILFTTKMSMMKIVDGGEFD-V 639

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           ++    A KL   DE+++VE   ++  ++L +  G  +RF +        + +VGVRG+ 
Sbjct: 640 SKRTVAATKLADGDEVVNVEILHEQKTVILRSNDGFFLRFYV-DTIPEKKKAAVGVRGMR 698

Query: 729 LAKGDQV 735
           L K D +
Sbjct: 699 LGKNDFI 705



 Score = 44.9 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           L    IL  ++    K     +F +S R          +K+ +   +V V  +++   +I
Sbjct: 615 LNLYRILFTTKMSMMKIVDGGEFDVSKR------TVAATKLADGDEVVNVEILHEQKTVI 668

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           L S+ G  +R  V+ I    +A  GV      K++ +  V  + + E 
Sbjct: 669 LRSNDGFFLRFYVDTIPEKKKAAVGVRGMRLGKNDFIRDVFYLNDMEE 716


>gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
 gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
          Length = 756

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 239/809 (29%), Positives = 399/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLNAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT+IP HN  E+   C+ +IDNP  +L  LME++ GPD+PT A I+     I 
Sbjct: 177 TGIAVGMATDIPPHNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E       ++V++ +P+Q + + +LE+IA  ++ K++  + D
Sbjct: 237 KIYESGRGSIRMRAVYEMENG-----EVVISALPHQASSSKILEQIAAQMQAKKLPMVTD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      + ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPVRLVLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDGRPKVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR E V RR ++ L+K   R H+L  L IA  N+DEV+ IIRF   P   + 
Sbjct: 352 DMLAEWLVFRTETVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AILEL+L  L  L    I+ 
Sbjct: 409 ELMAR--------------------------FGLSDRQAEAILELKLRHLAKLEEMKIKA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   IL S  RL  +IK+EL    +     RR+ +V       + +++ +
Sbjct: 443 EQSELEEERNKLEQILGSERRLKTLIKKELEKDAETYGDDRRSPLVVRGESRALTEQELL 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D         ++   +F  
Sbjct: 503 PTEPVTVVLSEKGWV--------RCAKGHDIDAGALSYKAGDGFLCAAQGRSNQQSVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    +L  GE +  ++   E        + + A+ 
Sbjct: 555 SSGRAFSTDTHTLP--SARSQGEPITTRFNLAPGETMEHVLLGEE------QHHYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPIS 711
            G       +D I  N++GK  + L S  + L+     ++ +  IL  T  G+ + F + 
Sbjct: 607 AGYGFVCSFADMISRNKAGKALLSLPSGAKALAPRRVDKDANPSILAITNEGRMLVFGLD 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   A      + GI        ++++    ++ AD+           + A +R ++  
Sbjct: 667 ALPQLAKGKGNKIIGIPSERAKNREELLIHLHLVPADSAV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
           + ++   + +    G       Q +   E
Sbjct: 719 SSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|116071803|ref|ZP_01469071.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
 gi|116065426|gb|EAU71184.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
          Length = 820

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 299/828 (36%), Positives = 449/828 (54%), Gaps = 67/828 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L+++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  P +  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRQPSLSDERLLELIPGPDFPTGGEVLLSSGLQDTYLQGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR 
Sbjct: 243 GVAHTEEVQLGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLTGL ++ +R E+++L  E + 
Sbjct: 417 --------------------LDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL ++K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLENRDQLLDAMVGELKTLKKRFSTPRRTRLVEGGDALIAERAASQRPNTELLRQQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                       Q  G          G+   G      D       +  +     +L  S
Sbjct: 517 LAALPGDGRLLIQADGQVKIVTPQVLGRLHFGDPCPLSDAPSPAQVILPIEPPPRLLAIS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V     W      P    + L + L   +GE I  + P P  ESS  +L ++ +  
Sbjct: 577 ANGRV-ALVRWEFAGQQPGVLERFLPSGL---EGEPIVALAPLPMQESSDLSLGLLSSDG 632

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
               +R  L++ + ++      +KL    ++ +   C + +D++L + +G+ +R PI+  
Sbjct: 633 R--FKRLPLAEVLDLSGRATSVVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPINED 690

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISM------AIVLHADADYDERICYMKHMSAQRR--- 763
                GR + G   + L  G+Q+I         +VL +      RI      S+QR    
Sbjct: 691 VLPLMGRLAQGPMTMRLLPGEQLIGALCPLEPTVVLVSGQGQFARIDLSSIRSSQRGDLG 750

Query: 764 ----LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                I+ DT+ IT +   + + G +S E  Q     +   L ++  G
Sbjct: 751 SMAIQITSDTDRITGMTEANGLIGIVSTE--QRHGRIDPTTLEITNPG 796



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 810 KRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           KR    +   +S R      AT V K+ +   L A     ++  +ILVSD G ++R+P+N
Sbjct: 635 KRLPLAEVLDLSGR------ATSVVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPIN 688

Query: 869 E--IRIASRATKGVVIFSTAKDERVVS 893
           E  + +  R  +G +       E+++ 
Sbjct: 689 EDVLPLMGRLAQGPMTMRLLPGEQLIG 715



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 68/510 (13%), Positives = 165/510 (32%), Gaps = 58/510 (11%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             VV  +R    P+   ++L +R+   S+   ++  + +      S   +  + +  R  
Sbjct: 304 MRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYR-- 361

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            EL L R T        + L  +   I    ++          +   +   KD   + R 
Sbjct: 362 -ELTLIRRTSHALRKTEDRLEVVEGLITALNNL--------QAVIAMIQEAKDA-ASARA 411

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           + +V     ++  +      + + +  L  +++  L       R  + R  +++ + D +
Sbjct: 412 SLMV----RLDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERERLKLLLENRDQL 467

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            D  +    T    FS+       +     I    A  +    +L           +P  
Sbjct: 468 LDAMVGELKTLKKRFSTPRRTRLVEGGDALIAERAASQRPNTELLRQQA----LAALPGD 523

Query: 638 EDESSWNNLYVVFATKH-----GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
                  +  V   T              LSD                  +++       
Sbjct: 524 GRLLIQADGQVKIVTPQVLGRLHFGDPCPLSDAPSP-------------AQVI--LPIEP 568

Query: 693 ENDILLTTKLGQC--VRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +L  +  G+   VR+  +  +          G+      +G+ ++++A  L      
Sbjct: 569 PPRLLAISANGRVALVRWEFAGQQPGVLERFLPSGL------EGEPIVALA-PLPMQESS 621

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           D  +  +      +RL   +  +++          +  + +   +  +   ++ VS+ G 
Sbjct: 622 DLSLGLLSSDGRFKRLPLAEVLDLSGRATSVVKLKDGVQLKAAVICREHHDLILVSDIGR 681

Query: 809 GKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
             R    +    +  R  +G     +    ++  + A+ P+     ++LVS +G   R+ 
Sbjct: 682 MLRLPINEDVLPLMGRLAQGPMTMRLLPGEQL--IGALCPLEPT--VVLVSGQGQFARID 737

Query: 867 VNEIRIASRATKGVVIFS-TAKDERVVSVE 895
           ++ IR + R   G +    T+  +R+  + 
Sbjct: 738 LSSIRSSQRGDLGSMAIQITSDTDRITGMT 767


>gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 748

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/739 (32%), Positives = 378/739 (51%), Gaps = 58/739 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EINYEGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGS 247
           +IP HNL E+ D  V ++DNP   LD ++ +++GPDFPT A I+  +  I+  Y  GRGS
Sbjct: 183 DIPPHNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E       +I++T +P+Q + + ++ +IAE +  K++  + D+RDE+D + 
Sbjct: 243 VKMRAVWKKEDG-----EIIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHEN 297

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R     ++ ++  L+  T L+  + VNM  +    KP    L+ IL  +++F
Sbjct: 298 PVRIVLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDNKPAVKNLLQILTEWLSF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+     LM R    
Sbjct: 358 RRSTVTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIRNEDEPKPV---LMAR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q  AIL LRL  L  L   +++ E + L  E 
Sbjct: 411 ----------------------FELSDEQAEAILNLRLRHLAKLEEHELQAEKDQLEQER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   ILSS  RL  +IK+E+        +PRR+ IVE      + + + I  E + V +
Sbjct: 449 AQLEQILSSERRLNTLIKKEIQQDAKTYASPRRSPIVERAEAKAISESEMIPAEPVTVIL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V+         Q        G+  +  D         +    +F  S G  Y   
Sbjct: 509 SEMGWVRCAKGHDIDPQ--------GLNYKAGDKYLAHACGKSSQPAVFIDSSGRSYALD 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   L+L  G  +  ++   E++       ++ A+  G     K 
Sbjct: 561 PLSLP--SARSQGEPLTGKLTLPAGASVDYLLIENENQQ------LLMASDAGYGFICKF 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
            D I  N++GK  + L    ++L  +       +L+  T  G+ + FP+  +   +    
Sbjct: 613 EDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVALTAAGRMLIFPVKDLPSLSKGKG 672

Query: 722 VGVRGISLAKGDQVISMAI 740
             +  I  A   +   + +
Sbjct: 673 NKIVTIPAASAKERTDLLV 691


>gi|291529244|emb|CBK94830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale M104/1]
          Length = 751

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 261/761 (34%), Positives = 411/761 (54%), Gaps = 31/761 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
               ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 138 A-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                 L DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN G
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   I
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEI 254

Query: 257 EKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           EK    ++++V+TEIPY +   N    L  +  LV  K   DI D+ ++S ++G R+V+E
Sbjct: 255 EKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLE 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ 
Sbjct: 315 LKKGADVEALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKY 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K     
Sbjct: 375 ETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFK----- 429

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              S  +      +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  
Sbjct: 430 ---SKASEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEH 486

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RS +  +I +EL + + E    RRT +      +  +  +   D+V+ +   GYVK V  
Sbjct: 487 RSSMAKVIMKELKAFRKEYARDRRTELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDT 546

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y   +      + ++++          V     +  F++ G ++  KV  LP G  + 
Sbjct: 547 STYDRNKDTADAENKLILK----------VKNIDKLCIFTNNGNMHLVKVLDLPYGKFRD 596

Query: 614 RGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N+ + +   E I  I P  + E       ++F TK   ++    ++F+   ++ 
Sbjct: 597 KGTPIDNVSNYDSSKEDIVFIAPLMDVEK----HKLIFGTKSAMIKLVDGAEFVVTRKTS 652

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A KL   DE+L V+  ++   +++ +K    +R           + +VGVRG+ L + 
Sbjct: 653 -QATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCG-TIPEKKKAAVGVRGMRLDRE 710

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           D++    I L  D +  E     K ++  R  I+    +  
Sbjct: 711 DEL--TDIYLLNDQEEKEVEVKGKQVALHRLHIANRDTKGV 749



 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           + +++  ++  ++    K     +F ++ ++ +  +  D  +      L+ V  +++N  
Sbjct: 621 MDVEKHKLIFGTKSAMIKLVDGAEFVVTRKTSQATKLMDDDE------LLFVDMLSENAT 674

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++ S K   +R+    I    +A  GV      +++ +  +  + + E  +
Sbjct: 675 MVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLNDQEEKE 726


>gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens]
 gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens]
          Length = 751

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 255/806 (31%), Positives = 400/806 (49%), Gaps = 76/806 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I + +E  EK      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M +
Sbjct: 2   KKIPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSE 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D 
Sbjct: 58  LGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 117

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  G
Sbjct: 118 PKSFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  
Sbjct: 178 IAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAM 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI +R +   E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + DLR
Sbjct: 238 YESGNGSIKMRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLR 292

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +     V+I        + +++ L+  T L+  + VN   +    KP    L+ I
Sbjct: 293 DESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAI 352

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L
Sbjct: 353 LTEWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            L+E Q  AILE++L  L  L    +R EL
Sbjct: 410 ISR--------------------------FNLTERQAEAILEMKLRHLAKLEEIKLRGEL 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E       L+S   L  ++K+E+   +DE   PRR+ I+  E    +++ED +  
Sbjct: 444 DELSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA +        +  +  D      +  T+  VLFF   
Sbjct: 504 EPITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGE 555

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY      LP  S + +G+ L   L+  +G     I+             V+ AT  G
Sbjct: 556 GKVYSLPGHVLP--SARGQGEPLTGKLNPAEGVLFEAIV------GGEPEQKVLLATDSG 607

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL--LTTKLGQCVRFPISAI 713
                K+ D    NR+GK  +KL  +  IL          +     T +G+ + F +  +
Sbjct: 608 YGFIAKIEDLYVKNRNGKACIKLSEKSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL 667

Query: 714 RVFAGRNSVGVRGISLAK----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +      +  I  AK     + ++ + ++   D+           + A +R  +   
Sbjct: 668 PELSRGKGNKLISIPAAKAVSREEYIVDIQVLTTNDS---------LTVHAGKRHFTLKG 718

Query: 770 EEITSLKNDSSVEGNISEERCQELKL 795
           E++T  K +    GN      Q +  
Sbjct: 719 EDLTHYKGERGRRGNRLPRGLQNVSQ 744



 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 39/253 (15%)

Query: 663 SDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVF 716
            +F    RS  I       L   D +        E   ++ +K G  +  +      +  
Sbjct: 476 DEFGDPRRSPIITREDSQALKEEDIL------PNEPITVVLSKNGWVRAAKGHDVDGKEL 529

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + +     +  +LA+ +Q +           Y      +     Q   ++G       + 
Sbjct: 530 SYKAGDEFKAQTLARTNQQV--LFFDGEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGVL 587

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++ V G             EQ +L  ++ G+G      D  + NR+GK      +S+ +
Sbjct: 588 FEAIVGG-----------EPEQKVLLATDSGYGFIAKIEDLYVKNRNGKA--CIKLSEKS 634

Query: 837 EIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TAKD 888
               ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +++
Sbjct: 635 ---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSRG-KGNKLISIPAAKAVSRE 690

Query: 889 ERVVSVERIRESE 901
           E +V ++ +  ++
Sbjct: 691 EYIVDIQVLTTND 703


>gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
 gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 767

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 243/820 (29%), Positives = 406/820 (49%), Gaps = 76/820 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+ PN+DG+ +EPV L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+V  C+ +IDNP  DL  LME + GPD+PT A +I  R  I+
Sbjct: 177 TGIAVGMATDIPPHNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADIE 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GSI  R V   E+      +IV+T +P+Q +   +LE+IA  ++ K++  ++D
Sbjct: 237 RIYDTGKGSIRARAVYSEEQG-----EIVITSLPHQASSGKILEQIANQMQAKKLPMVSD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        D ++  L+  T L+  F VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPVRLVIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDGRPKVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR +Y L+K   R H+L  L +A  N+DEV+ IIR++  P   + 
Sbjct: 352 QLLTEWLEFRLTTVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  +ILEL+L  L  L    I+ 
Sbjct: 409 ELMAR--------------------------FNLSDKQAESILELKLRHLAKLEEFKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +LSS  RL  ++K+EL+   +     RR+ I+E      + +++  
Sbjct: 443 EQDELAAERDKLELLLSSERRLKTLVKKELIQDGETYGDNRRSPIIERVDAKALTEQELT 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +       G+  +  D      +  ++ + +F  
Sbjct: 503 PTESVTVVLSDKGWV--------RCAKGHDVDVEGLSYKSGDSYLCSVMGKSNQAAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    ++  G  +  ++         +  + + AT 
Sbjct: 555 STGRAFATDSHTLP--SARSQGEPITTRFNMAPGATMQHVLM------GEDEQFFLLATD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +    +  +   +  +  +L  T  G+ + F + 
Sbjct: 607 AGYGFICAYPDLVSRNKAGKALLSLPTNALAMQPKLINKTADQSLLAITSEGRMLMFSLD 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           A+   +      + GI        ++ ++ + +V H  A           + A +R ++ 
Sbjct: 667 ALPQLSKGKGNKIIGIPTDRAKNREELLLHLNVVPHNTAVT---------LWAGKRKLTL 717

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
              ++   + +    G       Q +   +  +  ++E G
Sbjct: 718 KPSDLEHYRGERGRRGAKLPRGLQRVDSVDVEMGPLAEDG 757


>gi|298252230|ref|ZP_06976033.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546822|gb|EFH80690.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 840

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 279/917 (30%), Positives = 466/917 (50%), Gaps = 98/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     ++++  E GI     +  M  ++ TY ++V+  RA+PD RDGLKPV RRIL GM
Sbjct: 1   MASVSENTEKTVETGIIQEDFSVIMAQAFATYGLSVVTDRALPDARDGLKPVQRRILAGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +     ++  VK A + G ++G YHPHG+ ++YDA  RMAQ +++R  LIEGQGN GS 
Sbjct: 61  REARYLASRPTVKSAEVVGLILGNYHPHGDTSVYDAAVRMAQPFTMRYPLIEGQGNMGSE 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY--DGSFQEPVVLCARYPNVLVNG 178
           DGD PAA RYTE RL   A  L+ D+ ++TV   P Y  D   QEP  L  R P V VN 
Sbjct: 121 DGDAPAAYRYTEMRLSPLAEALMADMERETVPLHPTYKQDPRVQEPDYLPGRIPPV-VNP 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++TNIP HNLGEV+  C+A++D PD+ +D LM  I GPDF  G  I+G  GI+
Sbjct: 180 SSGIAVGLSTNIPPHNLGEVLRACIALLDRPDMTVDELMGYIPGPDFSQGGHIIGTEGIR 239

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IA 297
           + + TG+G I++R    +E+T   R  +VVT IP    +  +   I +    +++   +A
Sbjct: 240 DYFTTGKGRIIVRAEVRLEETPRSR-ALVVTRIPP-TGRDKVKASIIKAFNARKLEGMMA 297

Query: 298 DLRDESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPE 350
           DLRDESD +   R+V+EL++   A   L QLYR T LQ   S  MV L G       +P+
Sbjct: 298 DLRDESDTEKGTRIVLELRKDVDAAQTLEQLYRETDLQIAISFQMVFLFGSPMQAARQPK 357

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +  ++ +L  + A + +++ RR +Y L KAR+R HV+ GL    A+ +E+V+I + S + 
Sbjct: 358 QTGMLELLNYWNAHQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEIVKIFQQSEDR 417

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            +ARR + +R                            L+E+Q+  I  + L+++T L  
Sbjct: 418 ASARRAIEER--------------------------YSLTEIQSDVIASMTLSQVTKLDS 451

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMED 529
              + E + L   I+E  ++L++R  L+ ++K+E+  +  +    RRT I VEG      
Sbjct: 452 GKYQRERDELQRRIEELENLLANRRALISLLKKEMQQLMRQFADERRTYIDVEGQPHAPI 511

Query: 530 EDC---IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
                   RE + V  +  G +K +    ++ +++ G   +   +R ++ +  +   +T 
Sbjct: 512 THVASLHEREPLTVAFAFPGTLKALAPDTFKPKQKNGV-LAYNPVRGDEQLRQVVATTTR 570

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  SS G V++    RLP+ +  A+G+ + ++L L  GE I  ++P    ++   + 
Sbjct: 571 DYLLCMSSTGRVFQVGSHRLPLVTRSAKGEVIRDLLELAPGEEIVAVVPI---DAYDEDR 627

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+V  ++ G V+++ LS++  ++  G   MKL   D +++      + +  +TT   Q +
Sbjct: 628 YMVTFSRLGKVKKSPLSEYKTVDIDGAQDMKLAEGDSVVTALLSRGQGEYFVTTDYAQTL 687

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF   A+R   GR   GV  I+LAKG  V+  A                           
Sbjct: 688 RFSDEALRA-QGRVGQGVAAIALAKGGGVVVSA--------------------------- 719

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                     +    +G + +E   E+  +   +L V+E+G  K+     +    R+  G
Sbjct: 720 ----------SYYEPQGTVVDETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIIL-----VSDKGT-LIRVPVNEIRIASRATKGV 880
           +  T++   +    ++    VN+ D ++L       +KG   + +PV+E++   R  +GV
Sbjct: 770 VVTTEIGDKDR---VLLSMLVNEQDHLLLGWTGRNGEKGEHALVLPVSEVKAFPRVKQGV 826

Query: 881 VIFSTAKDERVVSVERI 897
            + +     R+++V ++
Sbjct: 827 EVVN----GRILTVVKL 839



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 94/539 (17%), Positives = 180/539 (33%), Gaps = 64/539 (11%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQR-SWNASDIKDLIDLIDDSSYTIGSDGTM-YL 449
            A      +  +   S   +  R  L  R   +A+   + +    D    I       + 
Sbjct: 288 NARKLEGMMADLRDESDTEKGTRIVLELRKDVDAAQTLEQLYRETDLQIAISFQMVFLFG 347

Query: 450 SEVQT------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI--LSSRSRLLGII 501
           S +Q         +LEL             R     L    +    I  L + +     I
Sbjct: 348 SPMQAARQPKQTGMLELLNYWNAHQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEI 407

Query: 502 KQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
            +     +D   + RR  I E     E +  ++    +  V+ L   K         QRR
Sbjct: 408 VKIFQQSEDR-ASARRA-IEERYSLTEIQSDVIASMTLSQVTKLDSGKYQRERD-ELQRR 464

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
             +     ++ +   +  L        +  F+     Y +       G P A    + ++
Sbjct: 465 IEE--LENLLANRRALISLLKKEMQQLMRQFADERRTYIDV-----EGQPHA---PITHV 514

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
            SL++ E +T    FP                 G ++      F    ++G +A      
Sbjct: 515 ASLHEREPLTVAFAFP-----------------GTLKALAPDTFKPKQKNGVLAYNPVRG 557

Query: 682 DE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGI-SLAKGDQVIS 737
           DE +  V   T  + +L  +  G+  +   S       R++ G  +R +  LA G+++++
Sbjct: 558 DEQLRQVVATTTRDYLLCMSSTGRVFQVG-SHRLPLVTRSAKGEVIRDLLELAPGEEIVA 616

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +  +   D D             +  L    T +I   ++    EG         L   +
Sbjct: 617 VVPIDAYDEDRYMVTFSRLGKVKKSPLSEYKTVDIDGAQDMKLAEG--DSVVTALLSRGQ 674

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-------FPVNDN 850
                 ++     R S    R   R G+G+ A  ++K    G +V+          V++ 
Sbjct: 675 GEYFVTTDYAQTLRFSDEALRAQGRVGQGVAAIALAKGG--GVVVSASYYEPQGTVVDET 732

Query: 851 --------DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                   + +++V+++GTL +VPV++     RAT GVV       +RV+    + E +
Sbjct: 733 TGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGGVVTTEIGDKDRVLLSMLVNEQD 791


>gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786]
          Length = 776

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 255/820 (31%), Positives = 392/820 (47%), Gaps = 81/820 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E       S+++    +++YL+YA++V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTPDLFAEPAAPEGDSLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++G+ TVDF PNYDGSF EP +L  R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFS 338
                             +RDES +     ++   +  + D    +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKSMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNAT 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLAAILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                               G   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKQA-----------------------------LIGAFGLTERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQFGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 TLIQQEKRATFETKVVDEPVT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQ 692
            ++       ++ A+ +G     K+ D +   ++GK  M +D+        +  +     
Sbjct: 621 AEQP------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPVLPA 674

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI------SMAIVLHADA 746
            + +   +  G+ + F I  ++   G    GV  ++L   + ++      +  +VL    
Sbjct: 675 ASRVACLSSGGRLLVFGIDEMKTLGG-GGRGVILMALDPKETLVQALAIDAAGVVLTGTG 733

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
              +         A    +     +  +      V G   
Sbjct: 734 RGGKAQEETLAGRALEPHVGKRARKGRAPDTKLKVSGLRP 773



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  S  GFG      D     ++GK     D         L  +  +    ++  
Sbjct: 621 AEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPVLPAASRVAC 680

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S  G L+   ++E++      +GV++ +    E +V    I  + +V
Sbjct: 681 LSSGGRLLVFGIDEMKTLGGGGRGVILMALDPKETLVQALAIDAAGVV 728


>gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147]
          Length = 776

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 255/820 (31%), Positives = 392/820 (47%), Gaps = 81/820 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E       S+++    +++YL+YA++V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTPDLFAEPAAPEGDSLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++G+ TVDF PNYDGSF EP +L  R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFS 338
                             +RDES +     ++   +  + D    +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKSMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNAT 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLAAILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                               G   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKQA-----------------------------LIGAFGLTERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQFGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 TLIQQEKRATFETKVVDEPVT-VVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGG--RGDGVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQ 692
            ++       ++ A+ +G     K+ D +   ++GK  M +D+        +  +     
Sbjct: 621 AEQP------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPVLPA 674

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI------SMAIVLHADA 746
            + +   +  G+ + F I  ++   G    GV  ++L   + ++      +  +VL    
Sbjct: 675 ASRVACLSSGGRLLVFGIDEMKTLGG-GGRGVILMALDPKETLVQALAIDAAGVVLTGTG 733

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
              +         A    +     +  +      V G   
Sbjct: 734 RGGKAQEETLAGRALEPHVGKRARKGRAPDTKLKVSGLRP 773



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  S  GFG      D     ++GK     D         L  +  +    ++  
Sbjct: 621 AEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPVLPAASRVAC 680

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +S  G L+   ++E++      +GV++ +    E +V    I  + +V
Sbjct: 681 LSSGGRLLVFGIDEMKTLGGGGRGVILMALDPKETLVQALAIDAAGVV 728


>gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
 gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
          Length = 773

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 247/767 (32%), Positives = 379/767 (49%), Gaps = 70/767 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++ +    E       +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M 
Sbjct: 3   DDNTLDLFNEPPSDSDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFAMN 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS D
Sbjct: 63  EMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRD 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL   A  LL ++ + TVDF PNYDGSF+EP VL AR P VL+NG  G
Sbjct: 123 GDGAAAMRYTEARLTPIAKLLLGEIDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNA 240
           IAVG+AT IP+HNL EV    VA+I +P +    LM+ + GPDFP G  I+     I  A
Sbjct: 183 IAVGLATEIPSHNLREVAGAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAA 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA--- 297
           Y TGRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E +  K  +      
Sbjct: 243 YETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQINPKIKLGKKALT 302

Query: 298 ---------------DLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVN 340
                           +RDES +     ++   + +  D    +N L  +TSL+S   +N
Sbjct: 303 PEQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLN 362

Query: 341 MVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           MV + G  +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DE
Sbjct: 363 MVMVGGDGRPRQKGLSEILHEWIAFRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNIDE 422

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           V+RIIR S  P+ A                                   L++ Q   ILE
Sbjct: 423 VIRIIRESDEPKVA-----------------------------LMAAFGLTDRQAEDILE 453

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           +RL +L  L +  I  EL  L  E  +  ++L S S +   + +E+ +   +    RRT 
Sbjct: 454 IRLRQLARLEKIKIEKELAELREEKAKLEELLGSESAMKRQLIKEIEADAKQYGDERRTL 513

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I +      +   +      V VS  G+V        RA +  G   +G   +  D +  
Sbjct: 514 IQQEKRATFEARVVDEPVT-VVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYA 564

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T  +++ + S G VY   V +LP G  +  G  + +++ L  G  +        +
Sbjct: 565 AFQCRTPDTLIAWGSNGRVYSVAVAQLPGG--RGDGVPVTSLIELESGSHLMHYYAASAE 622

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILL 698
           ++      ++ A+ +G     K+ D +   ++GK  M +D+    +  +        +  
Sbjct: 623 QA------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAEQVAC 676

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +  G+ + F +  ++  +G    GV  + L   + ++    +  A 
Sbjct: 677 LSSGGRLLVFGLDEMKTLSG-GGRGVTLMGLDDNETLVQALAINKAG 722



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 59/176 (33%), Gaps = 6/176 (3%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G +   GD + +       D           +  A  +L  G  + +          G+
Sbjct: 552 AGFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGS 611

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       EQ +L  S  GFG      D     ++GK     D         L  +
Sbjct: 612 HLMHYYAA--SAEQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGA----APLAPM 665

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             + D +Q+  +S  G L+   ++E++  S   +GV +     +E +V    I ++
Sbjct: 666 PMLPDAEQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMGLDDNETLVQALAINKA 721


>gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
 gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
          Length = 752

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/812 (30%), Positives = 407/812 (50%), Gaps = 76/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ ++ +   E     ++S+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M
Sbjct: 1   MSDPVMGATSPE-----TLSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  LI+GQGN+GS 
Sbjct: 56  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSP 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL +LG+ TVD++PN+DG+  EP+VL AR PN+L+NG 
Sbjct: 116 DDPKSFAAMRYTESRLTRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVV   + +++ P   L+ L +II+GPDFPT A +I  R+ I 
Sbjct: 176 TGIAVGMATDIPPHNLREVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEIS 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R    +E        +VV  +P+QV+ + +LE+IA  ++ +++  +AD
Sbjct: 236 AMYKTGRGSLKMRAAWRVEDG-----AVVVHALPHQVSGSKVLEQIAAQMQARKLPMVAD 290

Query: 299 LRDESDRQGY--RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        D +++ L+  T L+  + VN+  +    +P   +L 
Sbjct: 291 LRDESDHEHPTRFVVVPRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDGRPGVKSLA 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L K   R H+L G  +A  N+DEV+RI+R    P  A  
Sbjct: 351 TILLEWLEFRRTTVRRRLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPA-- 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            L+E+Q  AIL+L+L  L  L    IR 
Sbjct: 409 -LMAR--------------------------FQLTELQADAILDLKLRNLAKLEEMKIRG 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E N L  E  +    L S +RL  +IK+EL SV ++    RR+ IV  E      + +  
Sbjct: 442 EQNELAEERDDLQKTLGSDARLKTLIKKELESVANDHGDDRRSPIVEREEAKAFSELELT 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + + + +S  G++        RA +        +  +  D         ++   + F 
Sbjct: 502 TADPLTIVLSEKGWI--------RAAKGHDIDPEALSYKSGDGFKLAAKGRSNQPTVVFD 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y     +LP  S + +G+ L   ++   G     ++      +  +    + A+ 
Sbjct: 554 STGRSYSLPSHQLP--SARGQGEPLTGRINPPSGATFEALL------TGVDADRYLLASD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SVETCTQENDILLTTKLGQCVRFPI 710
            G     + +D    N++GK  + L     +L   SV +  +   +   T  G+ + FP+
Sbjct: 606 AGYGFVGRFADLQTKNKAGKAVLSLPKGAGVLQPGSVGSADETAMVAAVTNEGRLLVFPL 665

Query: 711 SAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           + +   +      + GI     A  ++++  A+VL            +  ++A +R +  
Sbjct: 666 TDLPELSRGKGNKIIGIPTPRAAAREELMVGAVVLVPGN--------VLQITAGKRHLKL 717

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
              ++   + +    GN      Q++   +  
Sbjct: 718 KFSDLEHYRGERGRRGNKLPNGFQKVVAVDVL 749


>gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 256/806 (31%), Positives = 400/806 (49%), Gaps = 76/806 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I + +E  EK      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M +
Sbjct: 2   KKIPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSE 57

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D 
Sbjct: 58  LGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDD 117

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  G
Sbjct: 118 PKSFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATG 177

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  
Sbjct: 178 IAVGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAM 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI +R +   E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + DLR
Sbjct: 238 YESGNGSIKMRAIYTQE-----KQNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLR 292

Query: 301 DESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +     V+I        + +++ L+  T L+  + VN   +    KP    L+ I
Sbjct: 293 DESDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAI 352

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P   ++ L
Sbjct: 353 LTEWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQP---KQGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            L+E Q  AILE++L  L  L    +R EL
Sbjct: 410 ISR--------------------------FNLTERQAEAILEMKLRHLAKLEEIKLRGEL 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E       L+S S L  ++K+E+   +DE    RR+ I+  E    +++ED +  
Sbjct: 444 DELSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDLRRSPIITREDSQALKEEDILPN 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G+V        RA +        +  +  D      +  T+  VLFF   
Sbjct: 504 EPITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGE 555

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY      LP  S + +G+ L   L+  +G     I+             V+ AT  G
Sbjct: 556 GKVYSLPGHALP--SARGQGEPLTGKLNPAEGVLFEAIV------GGEPEQKVLLATDSG 607

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL--LTTKLGQCVRFPISAI 713
                K+ D    NR+GK  +KL     IL          +     T +G+ + F +  +
Sbjct: 608 YGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEEL 667

Query: 714 RVFAGRNSVGVRGISLAK----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +      +  I +AK     + ++ M ++   D+           + A +R  +   
Sbjct: 668 PELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS---------LTVHAGKRHFTLKG 718

Query: 770 EEITSLKNDSSVEGNISEERCQELKL 795
           E++T  K +    GN      Q +  
Sbjct: 719 EDLTHYKGERGRRGNRLPRGLQNVSQ 744



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 92/253 (36%), Gaps = 39/253 (15%)

Query: 663 SDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVF 716
            +F  + RS  I       L   D +        E   ++ +K G  +  +      +  
Sbjct: 476 DEFGDLRRSPIITREDSQALKEEDIL------PNEPITVVLSKNGWVRAAKGHDVDGKEL 529

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + +     +  +LA+ +Q +           Y      +     Q   ++G       + 
Sbjct: 530 SYKAGDEFKAQTLARTNQQV--LFFDGEGKVYSLPGHALPSARGQGEPLTGKLNPAEGVL 587

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++ V G             EQ +L  ++ G+G      D  + NR+GK      +S+ +
Sbjct: 588 FEAIVGG-----------EPEQKVLLATDSGYGFIAKIEDLYVKNRNGKA--CIKLSENS 634

Query: 837 EIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TAKD 888
               ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +++
Sbjct: 635 ---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSRG-KGNKLISIPVAKAVSRE 690

Query: 889 ERVVSVERIRESE 901
           E +V ++ +  ++
Sbjct: 691 EYIVDMQVLTTND 703


>gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
 gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
          Length = 772

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 251/770 (32%), Positives = 374/770 (48%), Gaps = 72/770 (9%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT      D+    E+   ++ +    + +YL YAI+V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MTSQPTLFDQLSPAEEPRETLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  + K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMNELRLAPDAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   A  LL+++G+ TV+F+ NYDGS QEP  L AR P  L+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPIARLLLEEIGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVG+AT IP+HNL EV +   A+I NP I  D LMEI+ GPDFP G  I+     I
Sbjct: 181 ASGIAVGLATEIPSHNLNEVAEAAKALIRNPKISHDELMEILPGPDFPGGGQIITAPHAI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------ 291
              Y  GRGS+ +R    IE+ +  + Q VVTE+P   +   +LE+I E+   K      
Sbjct: 241 SEIYRNGRGSLKVRARWKIEELARGQWQAVVTELPPGTSAQKVLEEIEEITNPKVRNGKK 300

Query: 292 ------------RIVDIADLRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLF 337
                        +  +  +RDE+ R     ++     +  +    +  L  +TSL+   
Sbjct: 301 ALSPEQISLRQQFLGMLDAVRDEASRDAPVRLVLEPKSKRINPGEFMQSLLAHTSLECNT 360

Query: 338 SVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  ILK ++ FR   V  RT + L +  DR H+L G    + N
Sbjct: 361 PVNLVMIGIDGRPRQKSLSDILKEWIEFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +D V+RIIR S  P+TA  E                             T  LSE Q   
Sbjct: 421 IDRVIRIIRESDEPKTALIE-----------------------------TFRLSEKQADD 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E +   D+L + + +  ++ +E+ + + +    R
Sbjct: 452 ILEIRLRQLARLEKIRIEQELAELRREKETLHDLLDNPASMKRLVIREIEADRKKFGDIR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I E    + +   I  E + V VS  G+V        R +   G   SG+  +  D 
Sbjct: 512 RTLIEEAEKAVVE-PKIADEPVTVIVSQNGWV--------RQRTGHGLTLSGLSFKSGDS 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   +   +   +L FSS G +Y   V  LP G  +  G  +         E I      
Sbjct: 563 LLAAYECRSTDLLLAFSSTGRIYTVAVHALPGG--RGDGMPITTFAETGIDETIVRYFAG 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-D 695
             D        V+ +T  G     K++D     R+GK  + L+  + +L     + ++  
Sbjct: 621 SPD------TTVLISTDSGYGFSAKVADMSSRVRNGKSFISLEKDETLLPPVAISPDDKW 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           I   +  G  + F ++ +R        GV  + L KGD++++   V    
Sbjct: 675 IGALSGNGHLLLFDMTELRALLS-GGRGVILMGLEKGDKLMAARPVSEKG 723



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 94/285 (32%), Gaps = 22/285 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I +  L + E+I       E       L+ +        R           + G I   L
Sbjct: 455 IRLRQLARLEKIRIEQELAELRREKETLHDLLDNPASMKRLVIREIEADRKKFGDIRRTL 514

Query: 679 DSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV--RGISLAKGDQV 735
               E   VE     E   ++ ++ G               R   G+   G+S   GD +
Sbjct: 515 IEEAEKAVVEPKIADEPVTVIVSQNGWVR-----------QRTGHGLTLSGLSFKSGDSL 563

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDSSVEGNISEERCQELK 794
           ++       D           +  A   L  G  + +  +   ++ ++  I         
Sbjct: 564 LAAYECRSTDLLLAFSSTGRIYTVAVHALPGGRGDGMPITTFAETGIDETIVRYFA---G 620

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +  +L  ++ G+G      D     R+GK      + K   +   VA+ P  D+  I 
Sbjct: 621 SPDTTVLISTDSGYGFSAKVADMSSRVRNGKSF--ISLEKDETLLPPVAISP--DDKWIG 676

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +S  G L+   + E+R      +GV++    K +++++   + E
Sbjct: 677 ALSGNGHLLLFDMTELRALLSGGRGVILMGLEKGDKLMAARPVSE 721


>gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus
           c2]
 gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2]
          Length = 758

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/751 (31%), Positives = 367/751 (48%), Gaps = 60/751 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H I        G    SI +  + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++
Sbjct: 14  HGIGMGGNSTDGFERRSIAEFSEQAYLNYAMYVILDRALPSVCDGLKPVQRRIVYAMSEL 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+    K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGNFGS D  
Sbjct: 74  GLTAASKHKKSARTVGDVIGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNFGSPDDP 133

Query: 124 PP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
              AA RYTE RL   AH LL +  + TVD++PN+DG+ +EP +L AR PNVL+NGG GI
Sbjct: 134 KSFAAMRYTESRLTAYAHSLLAEAEQGTVDWQPNFDGTLEEPTLLPARLPNVLLNGGMGI 193

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAY 241
           AVG++T+IP HNL EVV   +A++D P+  +D L   +RGPDFPT A +I     I   Y
Sbjct: 194 AVGLSTDIPPHNLREVVAATIALLDEPESTVDDLCRHLRGPDFPTEAEIITPPDEIMQMY 253

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG GS+  R    +E+      +I++T +P+QV+ + +LE+IA  +  K++  + DLRD
Sbjct: 254 RTGTGSVRQRARYEVEQG-----EIIITALPFQVSGSKILEQIAAQMNAKKLPLVTDLRD 308

Query: 302 ESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +     V+I   R   A+ ++  L+  T L+  + VNM  +    +P    L  +L
Sbjct: 309 ESDHEAPTRLVIIPRSRQVDAEALMAHLFATTDLEKSYRVNMNVIALDGRPRVMNLKDLL 368

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++ FR + + RR ++ L K  +R  +L GL IA  N+DEV+ +IR +  P   + EL+
Sbjct: 369 SEWLQFRRQTLTRRIQWRLAKVENRLEILAGLLIAFLNIDEVIAVIREADEP---KAELI 425

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AILE+RL +L  L    I+ E  
Sbjct: 426 AR--------------------------FDLTERQAEAILEIRLRQLAKLEEIAIKKEQG 459

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVRE 536
            L  E +    +L+  SRL  +++ EL     +    RR+R+V       + +   I  E
Sbjct: 460 ELMAESEILRGLLADESRLRNLLRDELQDDAQKYGDARRSRLVTRGAAQALAETALISSE 519

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S  G++        RA +        +  +  D         +  SV+     G
Sbjct: 520 PVTVVLSKNGWI--------RAAKGHDVDPVALSYKAGDGYLVHMNGKSTQSVILLDDTG 571

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      LP  S + +G+ L   LS   G +   ++   + ++      V+     G 
Sbjct: 572 RAYTLAAHSLP--SARGQGEPLTGRLSPPTGAQFNQMVMADDKDA------VLLWQSGGY 623

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
                  + +   R+GK+ + L     +   +    Q   I   +  G  +    + I  
Sbjct: 624 GFITPFEELLSRQRAGKVMVSLQDGATLGAPIRLDDQVQRIAFASSDGHVLILERAEIPQ 683

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            +     G + + L  G  +I+   ++  + 
Sbjct: 684 LS--KGRGNKLMGLKSGFTLIAACALVEGEG 712


>gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
 gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
          Length = 747

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/723 (32%), Positives = 382/723 (52%), Gaps = 61/723 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
             +  ++   + +YL Y++ VI+ RA+P++ DGLKPV RRI++ M ++G+    KY K A
Sbjct: 6   TETRPLSRFTEEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAKYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GK+HPHG++A Y+A+  MAQ ++ R  L++GQGN+GS D     AA RYTE R
Sbjct: 66  RTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPDDPKSFAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ TVD+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP HN
Sbjct: 126 LSKFSEVLLSELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
             EV + C  +++ P   L+ +ME+++GPD+PT A +I     I   Y TGRGSI +R  
Sbjct: 186 AREVANACAMLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSIKMRAC 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VV 311
             +E       +IV+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +     VV
Sbjct: 246 YSVEDG-----EIVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENPTRLVV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           +        + ++N L+  T L+  + VN+  L    +P+   L+GILK ++ FR+  V 
Sbjct: 301 VPRSNRVDTEQLMNHLFATTDLEKQYRVNLNILGLDGRPKVKPLVGILKEWLEFRQTTVT 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R          
Sbjct: 361 RRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKP---KEELMSR---------- 407

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AILEL+L  L  L    +  E + L  E ++   +
Sbjct: 408 ----------------FALTDKQAEAILELKLRHLAKLEEMKLTGEQDELNKEREKLETL 451

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S  RL  +IK+ELL+  +     RR+ IVE      + + D    E + V +S  G+V
Sbjct: 452 LGSDRRLKTLIKKELLADAENYGDERRSPIVERSEAKALSERDLTPAEAVTVVLSKKGWV 511

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  +        +  +  D         ++  V+F  S G  +  +   LP 
Sbjct: 512 --------RTAKGHDIEGDKLSYKSGDSYLASAEGKSNQPVVFLDSSGKSFSCEAHLLP- 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S +++G+ L    SL  GE +  ++       + +  +++ A+  G     + SD +  
Sbjct: 563 -SARSQGEPLTGRFSLVAGENVEHVLM------AKDESHLLLASDAGYGFVCQFSDLVSR 615

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N++GK  + L +  +IL          + +++ +  G+ + FP++ +   +     G + 
Sbjct: 616 NKNGKAIITLPTGAKILPPNNVNDLQHDKVIVISNEGRMLVFPVADLPQLS--KGKGNKL 673

Query: 727 ISL 729
           IS+
Sbjct: 674 ISI 676



 Score = 41.8 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT----DVSKINEIGALVAVFPVN 848
           +   E  +L  S+ G+G      D    N++GK I        +   N +  L       
Sbjct: 588 MAKDESHLLLASDAGYGFVCQFSDLVSRNKNGKAIITLPTGAKILPPNNVNDL------- 640

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            +D++I++S++G ++  PV ++   S+  KG  + S 
Sbjct: 641 QHDKVIVISNEGRMLVFPVADLPQLSKG-KGNKLISI 676


>gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001]
 gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 378/750 (50%), Gaps = 70/750 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+  N K VK AR+ 
Sbjct: 21  LTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVV 80

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ + YDAL R+AQD+++R  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 81  GDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 140

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LLD++ + TVDF PNYDG  QEP  L AR P +L+NG  GIAVG+AT IP+HNL EV
Sbjct: 141 SKLLLDEIDQGTVDFMPNYDGVEQEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREV 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIE 257
               VA+I NP I    LM+ + GPDFP G  I+     I  AY +GRGS+ +R    IE
Sbjct: 201 AAATVAMIRNPKIAHADLMQHMPGPDFPGGGQIISSEAEIAAAYESGRGSLKVRARWKIE 260

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DL 299
             +  + Q+V+TE+P       +LE+I E    K  +                      +
Sbjct: 261 DLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLSLLDAV 320

Query: 300 RDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIG 356
           RDES +     ++   + +  D    +N L  +TSL+S  S+N+V + G  +P +  L  
Sbjct: 321 RDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSE 380

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RRT++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A   
Sbjct: 381 ILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVA--- 437

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  L +  I  E
Sbjct: 438 --------------------------LMAAFGLSDRQADDILEIRLRQLARLEKIKIEKE 471

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +  ++L+S S +  ++ +E+ +   +    RRT I +      +   ++ E
Sbjct: 472 LADLRDEKAKLEELLASESAMKRLLIKEIEADAKQYGDERRTLIQQEKRATYE-ARVIDE 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G+V        RA +  G   +G   +  D +   F   T  +++ + S G
Sbjct: 531 PVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYAAFPCRTPDTLIAWGSNG 582

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP G  +  G  + +++ L  G  +          ++  +  ++ A+ +G 
Sbjct: 583 RVYSVAVASLPGG--RGDGVPVTSLIELESGSHLMHYY------AAAADQALLLASSNGF 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               K+ D +   ++GK  M +D+    +  +      + +   +  G+ + F I  ++ 
Sbjct: 635 GFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDASQVACLSSTGRLLVFGIDEMKT 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +G    GV  ++L   + ++    +  A 
Sbjct: 695 LSG-GGRGVTLMALDDKETLVQALAINGAG 723


>gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri]
          Length = 1132

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/730 (33%), Positives = 398/730 (54%), Gaps = 44/730 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S++E+E + +   S+ D M   +  YA  +I  RA+PD+RDGLKPV RRILF M ++ +
Sbjct: 1   MSNNEKENELVY--SLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELRL 58

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +N  Y K ARI GEV+GKYHPHG+ ++YDA+ R++Q+W +R  LI+  GN GS+DGDP 
Sbjct: 59  TFNTSYKKSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDPA 118

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL + + FLL DL K TV F PN+D S QEPVVL A +PN+LVNG  GIA G
Sbjct: 119 AAMRYTETRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAAG 178

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            ATNIP HNL E+++  +  I+ PD  +  L++ ++GPDFPTG +I G++GI  AY TG+
Sbjct: 179 YATNIPPHNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGGIIQGKSGILEAYQTGK 238

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++R     E        +V+TEIPY+V K  +++KI ++   +  ++I ++RDE+DR
Sbjct: 239 GKIIVRSKIKFEN-----NALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDETDR 293

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIEL + A+ + +   L + T+LQ  ++ NMVA+   +P +  L  IL  +V  +
Sbjct: 294 EGLRIVIELGKQANVETVRKFLLKNTNLQISYNFNMVAIANKQPRQLGLKEILTHYVEHQ 353

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EV+   +++ L +A+ R+ ++ GL   ++ LDEV+ +IR+S +   A   L+++     
Sbjct: 354 QEVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYSKDRSDAIHNLVKK----- 408

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +++Q  AI++LRL RLT      ++ E   L   I 
Sbjct: 409 ---------------------FGFTQIQAEAIVQLRLYRLTSTDILQLKAEQKELIATIA 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVS 543
           E   IL   ++L  +I  +L  +K +  + RR+ I   +  +E +     + +D+ + +S
Sbjct: 448 ELKAILRDINKLNSVIIHQLELIKKKFASRRRSVIENEIEAIEIQKTETIIEKDLNIWIS 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K +        +           +  D     F  +T   +L  +S G      V
Sbjct: 508 RDGYLKAL-----ENNQLARLVNEEFKRKPGDLWIADFQANTSDKILLITSKGNYVIIPV 562

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++     +  G+ +  I  L   E+I +     +   +    Y++ ATK+G +++  + 
Sbjct: 563 YQIKTVRLRDIGEHINTISELPGEEKIISAFLLNDF--NKKEQYIMLATKNGMIKKTAVK 620

Query: 664 DFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           DF          A+ L + DE+++ +       +++TT  G  V++    I     R + 
Sbjct: 621 DFEATRISKALKAINLKNDDEVVASQLVGHHPYVVITTANGFIVKYHKKQIPTLGLRTA- 679

Query: 723 GVRGISLAKG 732
           GV+ I+L   
Sbjct: 680 GVKSINLRDD 689



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            E I ++      E  IS     +   KEQ+I+  ++ G  K+T+  DF  + R  K ++
Sbjct: 574 GEHINTISELPGEEKIISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEAT-RISKALK 632

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++   +E   +VA   V  +  +++ +  G +++    +I      T GV   +   D
Sbjct: 633 AINLKNDDE---VVASQLVGHHPYVVITTANGFIVKYHKKQIPTLGLRTAGVKSINLRDD 689

Query: 889 ERV 891
             +
Sbjct: 690 VVI 692



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 7/215 (3%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG-VRGISLAKGDQ 734
            K    D  ++       + ILL T  G  V  P+  I+    R+    +  IS   G++
Sbjct: 528 FKRKPGDLWIADFQANTSDKILLITSKGNYVIIPVYQIKTVRLRDIGEHINTISELPGEE 587

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-EL 793
            I  A +L+     ++ I         ++    D E     K   ++     +E    +L
Sbjct: 588 KIISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEATRISKALKAINLKNDDEVVASQL 647

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                +++  +  GF        +        G+R   V  IN    +V      ++D +
Sbjct: 648 VGHHPYVVITTANGF-----IVKYHKKQIPTLGLRTAGVKSINLRDDVVINAGYCEDDNL 702

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +L+++  T  ++ + EI  ++R  KG  ++   KD
Sbjct: 703 VLITNLHTGKKISLTEIPTSTRPVKGTRLYKLNKD 737



 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 5/102 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND----NDQIIL 855
           IL ++ KG       Y  +       G     +S++     +++ F +ND       I+L
Sbjct: 548 ILLITSKGNYVIIPVYQIKTVRLRDIGEHINTISELPGEEKIISAFLLNDFNKKEQYIML 607

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +  G + +  V +   A+R +K +   +   D+ VV+ + +
Sbjct: 608 ATKNGMIKKTAVKDF-EATRISKALKAINLKNDDEVVASQLV 648


>gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J]
 gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J]
          Length = 780

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 249/764 (32%), Positives = 376/764 (49%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YAI+V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS +EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y +GRGS+ +R    IE+ +  + Q+VV E+P   +   +LE+I EL   K        
Sbjct: 239 VYESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 299 -----------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++     +        N L  +TSL+S  ++
Sbjct: 299 SPDQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLAEILREWIVYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           +V+RIIR S +P+ A                                   LS+ Q   IL
Sbjct: 419 DVIRIIRESEDPKAA-----------------------------LIQVFNLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   +V E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 FIQEERRAAAE-VKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFTFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
                +++      +V +T+ GN    K+ D +   ++GK  + LD  D+         +
Sbjct: 619 FAGHAEQN------LVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPAD 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   ++ G+ + F IS ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSEGGRMLLFQISELKTLAS-GGRGVILMELEKNEALL 715


>gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
 gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
          Length = 755

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 245/809 (30%), Positives = 403/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT++P HN  E+VD CV +IDNP +DL+ LME++ GPD+PT A I+  RT I 
Sbjct: 177 TGIAVGMATDVPPHNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI  R V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  +AD
Sbjct: 237 KIYETGRGSIKARAVYSVESG-----EIVITALPHQASGGKILEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      D ++  L+  T L+  F VN+  L    +P+   L 
Sbjct: 292 LRDESDHESPVRIVIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L  L IA  N+DEV+ IIR+  +P   + 
Sbjct: 352 QLLTEWLEFRLTTVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L++ Q  AIL+L+L  L  L    I+ 
Sbjct: 409 ELMSR--------------------------FNLTDEQANAILDLKLRHLAKLEEFKIKT 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E ++   +LSS  R+  +IK+EL    +     RR+ +VE      + +++ +
Sbjct: 443 EQSELEAEREKLELLLSSDRRMKTLIKKELKQDAETYGDERRSPLVERSESRALSEQELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +      + +  +  D         ++ + +F  
Sbjct: 503 PAEAVTVVLSEKGWV--------RCAKGHDIDPTALSYKAGDGFLCAASGRSNHATVFIG 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +     L+ GE +   +         +    + A+ 
Sbjct: 555 STGRAFATDTHTLP--SARSQGEPVTTRFQLSPGESMAHAL------LGEDGQCFLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +  ++L  +   +     IL  T  G+ + F + 
Sbjct: 607 AGYGFIGDYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSESILAITNEGRMLLFSVD 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   A      + GI        ++++    V+  D            + A +R ++  
Sbjct: 667 ALPQLAKGKGNKIIGIASDRAKSREELLVHLHVVPQDTAV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDKVE 747


>gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
 gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
          Length = 770

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 234/782 (29%), Positives = 382/782 (48%), Gaps = 70/782 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP  L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ E+V  CV ++D P  +L  L+EI+ GPD+PT A +I     I   Y TGRGSI  R
Sbjct: 190 HNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADIAKIYETGRGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E+      +I++T +P+Q     +LE+IA  +  K++  +ADLRDESD +     
Sbjct: 250 AVYTLEQG-----EIIITALPHQAGSGKILEQIANQMIAKKLPMVADLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V++        D ++  L+  T LQ  F VN+  L    +P+   L  +L  ++ +R   
Sbjct: 305 VIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDGRPQVKGLKEMLSEWLVYRVGT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L K   R H+L  L IA  N+DEV+ IIR+  +P   + EL  R        
Sbjct: 365 VTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDP---KSELKAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL+L+L  L  L    I  E   L  E  +  
Sbjct: 414 ------------------FNLTDKQAEAILDLKLRHLAKLEEFKITAEQEELAAERDKLQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  ++K+EL++  +     RR+ IVE      +  ++    E + V +S  G
Sbjct: 456 LILGSERRLKTLVKKELIADGETYGDARRSPIVERSESKALTQQELTPTEAVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+         Q         +  +  D      I  ++ + +F  + G  +      L
Sbjct: 516 WVRCAKGHDVDGQ--------ALSYKSGDSYLGSAIGKSNQAAVFIDTSGRAFATDSHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    ++  GE +  ++   +D+        + A+  G       SD  
Sbjct: 568 P--SARSQGEPITTRFNMAPGESMQHVLMGDDDQR------YLMASDAGYGFICSFSDMA 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L    + L  +         IL  T  G+ + F + A+   +      +
Sbjct: 620 SRNKAGKALLTLPENAQSLMPKRIDSSQSPSILAITNEGRMLMFELDALPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        +++++   ++ AD            + A +R ++    ++   + +   
Sbjct: 680 IGIPSERSKAREELLAHLCLVPADCSV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EG 783
            G
Sbjct: 732 RG 733


>gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
 gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
          Length = 756

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 257/758 (33%), Positives = 397/758 (52%), Gaps = 69/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I++   E++      ++T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKKIMNEVAEQK------ALTEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 55  SELGLKATAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSP 114

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG 
Sbjct: 115 DDPKSFAAMRYTEARLSAYADVLLAELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNGA 174

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMA++I  HNL EV + CV ++DNP  DL A+M+ I+GPDFPT A +I     I 
Sbjct: 175 TGIAVGMASDILPHNLTEVANACVHLLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAIT 234

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             YATG GSI +R + + E     ++ IV+T +PYQV+ A ++E+IA  +++K++  + D
Sbjct: 235 TLYATGHGSIKMRAIYNPE-----KQNIVITALPYQVSGAKVMEQIALQMQQKKLPMVED 289

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        D +++ L+  T L+  + VN   +    KP    LI
Sbjct: 290 LRDESDHEHPTRLVIIPRSNRVDVDGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKNLI 349

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ +R  VV RR +Y L K  +R HVL GL IA  N+DEV+ IIR   +P   ++
Sbjct: 350 TILSEWLIYRVSVVKRRLEYRLAKVLERIHVLEGLLIAYLNIDEVIAIIREHEHP---KQ 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q  AILE++L  L  L    IR 
Sbjct: 407 GLIAR--------------------------FNLSERQAEAILEMKLRHLAKLEEIKIRG 440

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           EL+ L IE      IL+S  +L  ++K E++  +D     RR+ I+  +    +++ED +
Sbjct: 441 ELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDAFGDVRRSPIIVRQESQALKEEDIL 500

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      S +  +  D         ++  ++FF 
Sbjct: 501 PNEPITVVLSKNGWV--------RAAKGHDINGSELSYKAGDEFKAQATARSNQQIVFFD 552

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G VY      LP  S + +G+ L   L+  +G    T++             V+ A+ 
Sbjct: 553 SEGKVYSLPGHSLP--SARGQGEPLTGKLNPAEGILFETVV------GGEAEQLVLLASD 604

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPIS 711
            G     K+SD    NR+GK  +KL +   IL       + +  +   T +G+ + F I 
Sbjct: 605 AGYGFVAKMSDLYVKNRNGKACVKLPAASRILPPRILPNQEELLVACATSVGRLLIFSIK 664

Query: 712 AIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHAD 745
            +   +      +  I   K     + VI + ++ + D
Sbjct: 665 ELPELSRGKGNKLISIPATKTASREEYVIDVQVLSNQD 702


>gi|291525297|emb|CBK90884.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale DSM 17629]
          Length = 751

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 255/738 (34%), Positives = 404/738 (54%), Gaps = 29/738 (3%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
               ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 138 A-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                 L DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN G
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   I
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEI 254

Query: 257 EKTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           EK    ++++V+TEIPY +   N    L  +  LV  K   DI D+ ++S ++G R+V+E
Sbjct: 255 EKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLE 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ 
Sbjct: 315 LKKGADVEALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKY 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K     
Sbjct: 375 ETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFK----- 429

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              S  +      +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  
Sbjct: 430 ---SKASEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEH 486

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RS +  +I +EL + + E    RRT +      +  +  +   D+V+ +   GYVK V  
Sbjct: 487 RSSMAKVIMKELKAFRKEYARDRRTELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDT 546

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y   +      + ++++          V     +  F++ G ++  KV  LP G  + 
Sbjct: 547 STYDRNKDTADAENKLILK----------VKNIDKLCIFTNNGNMHLVKVLDLPYGKFRD 596

Query: 614 RGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G  + N+ + +   E I  I P  + E       ++F TK   ++    ++F+   ++ 
Sbjct: 597 KGTPIDNVSNYDSSKEDIVFIAPLMDVEK----HKLIFGTKSAMIKLVDGAEFVVTRKTS 652

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A KL   DE+L V+  ++   +++ +K    +R           + +VGVRG+ L + 
Sbjct: 653 -QATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCG-TIPEKKKAAVGVRGMRLDRE 710

Query: 733 DQVISMAIVLHADADYDE 750
           D++  + ++   +    E
Sbjct: 711 DELTDIYLLYDQEEKEVE 728



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           + +++  ++  ++    K     +F ++ ++ +  +  D  +      L+ V  +++N  
Sbjct: 621 MDVEKHKLIFGTKSAMIKLVDGAEFVVTRKTSQATKLMDDDE------LLFVDMLSENAT 674

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++ S K   +R+    I    +A  GV      +++ +  +  + + E  +
Sbjct: 675 MVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDREDELTDIYLLYDQEEKE 726


>gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804]
 gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii]
          Length = 771

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 369/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+       D    +   ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MTDSNQPGLFDAAAGEADEAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQDMGLGPGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSRLLLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I  P +  + L  ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YA GRGS+  R     E+ +  + Q+VV E+P   +   +LE+I E+   K      
Sbjct: 241 AQIYAGGRGSLKARARWRFEEMARGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKK 300

Query: 298 D------------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLF 337
                              +RDES +     ++          D  +N L   TS++S  
Sbjct: 301 SLTTDQQQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSV 360

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P +  L  IL  ++AFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNLVCIGTDGRPRQKGLRDILTEWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR S  P+ A   LMQR                            LSE Q   
Sbjct: 421 VDEVIQTIRESDEPKAA---LMQR--------------------------FQLSERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     ++L + + L  ++ +E+ +   +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELADKREEQSRLQELLDNPASLKRLLVKEIEADAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I      + +   +V E + V VS  G++        RA++  G   +    +  D 
Sbjct: 512 RTLIETAERAVLE-TKVVDEPVTVIVSQKGWL--------RARQGHGHDAAQFGFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP  S +  G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVAGLP--SARGDGQPVTTMIDLAPGTRIVHSIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             D         + AT+ G     +L D +   R GK  + L++ D +L  V        
Sbjct: 621 SPDSRW------LLATQRGFGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDGARQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +     G   I L   D++
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSA-GGRGTILIGLDAADKL 713


>gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1]
 gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum
           aromaticum EbN1]
          Length = 786

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 248/762 (32%), Positives = 391/762 (51%), Gaps = 74/762 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E    G   + +    + +YL YA++V+  RA+P + DG+KPV RRIL+ M +M +   
Sbjct: 25  NEALPPGDGPLPLDRHAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAA 84

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K+VK AR+ G+V+GKYHPHG+ ++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA 
Sbjct: 85  SKHVKSARVVGDVIGKYHPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAM 144

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTECRL   A  LL ++ + TVDF PNYDG+F EP +L AR P VL+NG  GIAVGMAT
Sbjct: 145 RYTECRLTPIAELLLAEIDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMAT 204

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGS 247
            IP HNL EV D    +I +PD  LD ++ ++ GPDFP G   I     I++AYA GRGS
Sbjct: 205 EIPPHNLREVADAVCHLIRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGS 264

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE----- 302
           + +R   H+E+ +  + ++++ E+P+ V+ A++L  I  L   +      D+  E     
Sbjct: 265 LRMRARWHVEELARGQWRVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLK 324

Query: 303 --------------SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVAL--- 344
                         SD+   R+V+E +    + D  +  L  +TSL++  SVNM  +   
Sbjct: 325 QLVLGVLETVRDESSDKSPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHG 384

Query: 345 --NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
             +G +P++  L+ IL+ ++ FR   V RRT++ L++   R H+L G  IA  ++++V+R
Sbjct: 385 PVHGGRPQQKNLVQILREWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIR 444

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S  P+ A                                   LSE+Q   ILE+RL
Sbjct: 445 VIRESDEPKPA-----------------------------LIDAFGLSEIQAEDILEIRL 475

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            +L  L    I  EL  L  E ++   +L SR+ +  +I +E+     +    RRT I  
Sbjct: 476 RQLARLEGFRIEKELAELKEEREKLQHLLDSRAAMTKLILKEITDDAKKYGDERRTLIES 535

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  E  +  E + V VS  G+V        RA++  G   + V  +  DF   L  
Sbjct: 536 VAAVAPAEISVPDEPVTVIVSKNGWV--------RARQGHGIDAAAVTYKAGDFAFALVE 587

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             +   ++   + G  Y  +V  LP G  +  G  +  ++    G ++  ++   E ES+
Sbjct: 588 TRSTWPLVVLDTHGRAYTIRVAELPGG--RGDGVPIATLVDFQNGAKLAQVVS-AEPESA 644

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           W     +FA   G      L +     R+GK  M ++  +++L+      E  I   ++ 
Sbjct: 645 W-----MFANSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPARVLGE-RIAAVSEN 698

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           G+ + FP S ++V A     GV  ++L +G+ ++++A     
Sbjct: 699 GRLLVFPRSEMKVQA--GGRGVIVMALDEGESMVAVAAPADE 738



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +  +  G+G   +  +     R+GK      V K  ++ A   V      ++I  VS+ G
Sbjct: 646 MFANSGGYGFICTLLEATSRQRAGKAF--MTVEKGEKVLAPARVL----GERIAAVSENG 699

Query: 861 TLIRVPVNEIRIA--SRATKGVVIFSTAKDERVVSVE 895
            L+  P +E+++    R   GV++ +  + E +V+V 
Sbjct: 700 RLLVFPRSEMKVQAGGR---GVIVMALDEGESMVAVA 733


>gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 501

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 262/495 (52%), Positives = 349/495 (70%), Gaps = 9/495 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485

Query: 485 KECLDILSSRSRLLG 499
            E L IL S  RL+ 
Sbjct: 486 AELLHILGSADRLME 500


>gi|315502966|ref|YP_004081853.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409585|gb|ADU07702.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 829

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 272/832 (32%), Positives = 395/832 (47%), Gaps = 54/832 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++
Sbjct: 17  DQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDR 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK ARI G+VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA R
Sbjct: 77  GHVKSARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAAR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  L  +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 136 YTEARMSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY TGRG + 
Sbjct: 196 MIPHNLGEVVQAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVR 255

Query: 250 IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDRQ 306
           +RG   I    G   R+ I VTE+PY V    ++  I   V + KR+  IAD++D +DR+
Sbjct: 256 MRGRVEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRE 315

Query: 307 G-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
              R+V+E K G +   +L  LYR T L+  F VN + L   +P    L  +L  F+A R
Sbjct: 316 NGTRLVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKELLDVFLAHR 375

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RR+ Y   K  +R H++ GL IA+ ++D VV++IR S + + A+  LMQR     
Sbjct: 376 YEVVTRRSAYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQR----- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q   IL+  L RLT   R ++  E   L  EI 
Sbjct: 431 ---------------------FKLSEIQATYILDTPLRRLTKYDRLELEAEQEKLRGEIA 469

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDM 538
           E   IL     L  ++  EL +V  +   PRRT +V+G L       +         +  
Sbjct: 470 ELSKILDDEKVLRKVVSDELAAVVKQFGAPRRTTLVDGDLKEVLAASVPAGPLEVADDPC 529

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G V R             + R        D V  +   +    VL  +S G  
Sbjct: 530 QVILSATGLVARTAAES----EEAAEARRRSGRVKHDAVRAIVHSTARGRVLLVTSAGRA 585

Query: 599 YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +K  V  LP+   Q+       G +   ++ L  GE +  + P     S+  +  +   T
Sbjct: 586 FKIDVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGETVVGLAPLGP--SAQGSPGLALGT 643

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
           + G V+         +       + L   DE++           +   +     +RF  S
Sbjct: 644 RAGVVKVCAPDW--PVRSDEFEVISLRDGDEVIGATWLTDGAETLAFVSSEASLLRFAAS 701

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    +   G+ GI+L  G + +    +   D+ + E +      +  +         
Sbjct: 702 VVRPQGLKGG-GMAGINLPAGARAVFFGAIRTDDSKHGEPMVVTSTGATVKVTPFKAYPA 760

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                     +  +  E    +       +  +  G        D R     
Sbjct: 761 KGRATGGVRAQRFLKGELELSVAWIGPRPVGATATGDPVDLPPADPRRDGSG 812



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 20/230 (8%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGD 733
           D + ++   T    +LL T  G+  +  +  + V   ++       G+     + L  G+
Sbjct: 562 DAVRAIVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGE 621

Query: 734 QVISMAIVLHADADYDERICYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEER 789
            V+ +A +  +           +       A    +  D  E+ SL++   V G      
Sbjct: 622 TVVGLAPLGPSAQGSPGLALGTRAGVVKVCAPDWPVRSDEFEVISLRDGDEVIG------ 675

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L    + +  VS +    R ++   R     G G+   ++          A+   + 
Sbjct: 676 ATWLTDGAETLAFVSSEASLLRFAASVVRPQGLKGGGMAGINLPAGARAVFFGAIRTDDS 735

Query: 850 ND-QIILVSDKG-TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + ++V+  G T+   P        RAT GV      K E  +SV  I
Sbjct: 736 KHGEPMVVTSTGATVKVTPFKAYPAKGRATGGVRAQRFLKGELELSVAWI 785


>gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus]
          Length = 761

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 412/805 (51%), Gaps = 70/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R    + D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +        +  +  D         +    +F  S G  Y 
Sbjct: 508 VLSEKGWV--------RHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A 
Sbjct: 612 KGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I      + ++V+S  I L   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKEREEVLSHLIALPQGASL--------TLYAGKRKLGLKPADLENF 723

Query: 776 KNDSSVEGNISEERCQELKLKEQFI 800
           + +    G++     Q +   +  +
Sbjct: 724 RGERGRRGSLLPRGLQRVTRIDVEL 748



 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 20/210 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +   +     G + ++ A+G        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWVRHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S  R   +  ++Q  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLNITAG-----------SSIRQVIMSEEDQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    NRSGK +     +        V      D+D+I+ ++++G ++  P+ 
Sbjct: 608 GFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDL---DSDEILAITNQGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST-----AKDERVVS 893
           ++   ++  KG  I +       + E V+S
Sbjct: 665 DLPQLAKG-KGNKIINIPAAKAKEREEVLS 693


>gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3]
 gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 757

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 237/809 (29%), Positives = 401/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HN  E+V  C+ ++DNP  DL  +ME + GPD+PT A +I   + I 
Sbjct: 177 TGIAVGMATDVPPHNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDIS 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI  R V  IE       ++V+T +P+Q +   +LE++A  ++ K++  + D
Sbjct: 237 KIYTTGRGSIKARAVYKIENG-----EVVITALPHQASGGKILEQVAAQMQAKKLPMVVD 291

Query: 299 LRDESDRQGY--RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     VV+        D ++  L+  T L+  F VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPVRIVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ +R + V RR ++ L+K   R H+L  L  A  N+DEV+ IIR+  NP   + 
Sbjct: 352 QILTEWLEYRFQTVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            L+++Q  AIL+L+L  L  L    I+ 
Sbjct: 409 ELMSR--------------------------FNLTDIQADAILDLKLRHLAKLEEFKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +LSS  R+  +IK+EL+   +     RR+ +VE      + +++  
Sbjct: 443 EQSELEAERDKLQLLLSSDRRMKTLIKKELIQDGETYGDDRRSPLVERGESKALTEQELA 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D         ++   +F  
Sbjct: 503 PVEAVTVVLSEKGWV--------RCAKGHDIDAKALSYKSGDGFLCSAAGRSNQPSVFIG 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +  +   LP  S +++G+ +    +L+ GE +  ++   +D+      + + A+ 
Sbjct: 555 STGRAFATETHTLP--SARSQGEPITTRFNLSPGEVMEHVLLGDDDK------FYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +  +++  +   +     IL  T  G+ + F + 
Sbjct: 607 AGYGFVGSYKDMVSRNKAGKALLSLPANAKVIVPQIVDKSKVESILAITNEGRMLLFSLE 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +      + GI        ++++S   V+  D            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPSERAKSREELLSHLHVVPEDTAV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 780

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/764 (32%), Positives = 375/764 (49%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YAI+V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS +EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y +GRGS+ +R    IE+ +  + Q+VV E+P   +   +LE+I EL   K        
Sbjct: 239 VYESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 299 -----------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++     +        N L  +TSL+S  ++
Sbjct: 299 SPDQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           +V+RIIR S  P+ A                                   LS+ Q   IL
Sbjct: 419 DVIRIIRESEEPKAA-----------------------------LIQVFNLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   +V E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 FIQEERRAAAE-VKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFTFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
                ++S      +V +T+ GN    K+ D +   ++GK  + LD  D+         +
Sbjct: 619 FAGHAEQS------LVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPAD 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   ++ G+ + F IS ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSEGGRLLLFQISELKTLAS-GGRGVILMELEKNEALL 715


>gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
          Length = 747

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 372/743 (50%), Gaps = 61/743 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K
Sbjct: 10  HGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D     AA RYTE
Sbjct: 70  SARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNP+  +  L E ++GPD+P+ A +I   + ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYETGNGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 250 ATFTKEANN-----IVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R     A+ ++  L+  T ++  + VN+  +    +P+   L  +L  ++ FR   
Sbjct: 305 VLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A   L+ R        
Sbjct: 365 VTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA---LIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q   ILE +L +L  L    IR E + L  E ++ L
Sbjct: 414 ------------------FGLSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKIL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S+++L  +I+ EL +   +    RR+ +V  +    +++ + +  E M V +S  G
Sbjct: 456 GILDSKAKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      S +  RD D +       +   V F  S G  Y   V  L
Sbjct: 516 WI--------RAAKGHDVDASALSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L    S   G    T+       S+      V A+ HG     +  + I
Sbjct: 568 P--SARGNGEPLTGRFSPAPGTSFVTL------ASAEPETRFVLASSHGYGFVTRFENLI 619

Query: 667 QINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +   +L  SV      + I+  T  G  +    + +          +
Sbjct: 620 GRNKAGKAMLNLSAGSSVLIPSVVANVATDRIVAVTSSGNLLAIAANDLPELDKGKGNKI 679

Query: 725 RGISLAK--GDQVISMAIVLHAD 745
             I  AK   ++V+++  +    
Sbjct: 680 IEIPKAKLATERVVAIVAISPGQ 702


>gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908]
 gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908]
          Length = 758

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/820 (29%), Positives = 408/820 (49%), Gaps = 77/820 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLTSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HN  E+V  C+ ++DNP  +L  +ME + GPD+PT A I+     I 
Sbjct: 177 TGIAVGMATDVPPHNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADIV 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI  R V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  + D
Sbjct: 237 KIYTTGRGSIKARAVYAVENG-----EIVITALPHQASGGKILEQIAAQMQAKKLPMVVD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R      D ++  L+  T L+  F VN+  L    +P+   L+
Sbjct: 292 LRDESDHESPVRIVIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLL 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ +R + V RR +Y L+K   R H+L  L IA  N+DEV+ IIR+  +P   + 
Sbjct: 352 QILNEWLEYRFQTVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AIL+L+L  L  L    I+ 
Sbjct: 409 ELMSR--------------------------YNLSDKQADAILDLKLRHLAKLEEFKIKT 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +LSS  R+  +IK+EL    +     RR+ ++E      + + +  
Sbjct: 443 EQSELEAERDKLQLLLSSDRRMKTLIKKELKQDAETYGDDRRSPLIERSESKALTEHELA 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D         ++   +F  
Sbjct: 503 PVEAVTVVLSEKGWV--------RCAKGHDIDAKALSYKAGDSFLCSATGRSNQPSVFIG 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +  +   LP  S +++G+ +    +L+ GE +  ++   ED+      Y + A+ 
Sbjct: 555 STGRAFATETHTLP--SARSQGEPITTRFNLSPGEIMEHVLLGDEDK------YYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPIS 711
            G        D I  N++GK  + L +  +++S +   +     IL  T  G+ + F + 
Sbjct: 607 AGYGFVGSYKDMISRNKAGKALLTLPANSKVISPKLVDRSRPESILAITNEGRMLLFSME 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +       +G+ G      ++++    V+  D            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPGERAKAREELLIHLYVVPEDTSV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEG---NISEERCQELKLKEQFILTVSE 805
             ++   + +    G       +R   ++L E     ++E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVELGEGTQQAITE 758


>gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16]
 gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16]
          Length = 780

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 258/825 (31%), Positives = 395/825 (47%), Gaps = 76/825 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I+   EE     S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDITFQPEEPAD--SLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGS QEP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+   + I  
Sbjct: 179 GIAVGMATEIPPHNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            Y  GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K        
Sbjct: 239 IYEGGRGSLKVRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKAL 298

Query: 298 ----------------DLRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++   +  +      ++ L  +TSL+S   +
Sbjct: 299 TQDQQQLKATVLAVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL  ++AFR + V RRT++ L K  DR H+L G  + + N+D
Sbjct: 359 NLVMIGTDGRPRQKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNID 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A  E                                LS+ Q   IL
Sbjct: 419 EVIRIIRESDEPKPALIE-----------------------------AFGLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DT 514
           E+RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +       
Sbjct: 450 EIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRRRIIKEIETDAKQYSPEDKD 509

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           PRRT I E      +   ++ E + V +S  G+V        R ++  G        +  
Sbjct: 510 PRRTLIQEERRAAAE-VRVIDEPVTVVMSQKGWV--------RTRQGHGHDAQQFTFKAG 560

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   +L F + G VY   V  LP G  +  G  +  ++ L  G ++    
Sbjct: 561 DALYGTFECRTVDVLLVFGTNGRVYSVPVASLPGG--RGDGVPITTLIELQSGSQVAHTF 618

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
               ++       ++ AT  GN  + K+ D I   + GK  + LD  D  L+      E 
Sbjct: 619 AGSAEQR------MLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGDTPLAPAPIGDEA 672

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ +   +  ++V +     GV  I L   ++++    V            
Sbjct: 673 THVACLSGNGRLLLVALDEVKVLSA-GGRGVILIELEPKEKLLQAVGVGAPGLMLSGAGR 731

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             K  S +   ++         +   ++E  + E R   ++++  
Sbjct: 732 GGKPTSQKLAGVALQAYVGKRARKGKAIEAKLKEPRIDPVRVEPP 776



 Score = 42.2 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  +  G G +T   D     + GK     D        A +     ++   +  
Sbjct: 622 AEQRMLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGDTPLAPAPIG----DEATHVAC 677

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +S  G L+ V ++E+++ S   +GV++      E++
Sbjct: 678 LSGNGRLLLVALDEVKVLSAGGRGVILIELEPKEKL 713


>gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329]
          Length = 761

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 247/805 (30%), Positives = 411/805 (51%), Gaps = 70/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +        +  +  D         +    +F  S G  Y 
Sbjct: 508 VLSEKGWV--------RHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A 
Sbjct: 612 KGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I      + ++V+S  I L   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKEREEVLSHLIALPQGASL--------TLYAGKRKLGLKPADLENF 723

Query: 776 KNDSSVEGNISEERCQELKLKEQFI 800
           + +    G++     Q +   +  +
Sbjct: 724 RGERGRRGSLLPRGLQRVTRIDVEL 748



 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 20/210 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +   +     G + ++ A+G        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWVRHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S  R   +  ++Q  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLNITAG-----------SSIRQVIMSEEDQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    NRSGK +     +        V      D+D+I+ ++++G ++  P+ 
Sbjct: 608 GFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDL---DSDEILAITNQGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST-----AKDERVVS 893
           ++   ++  KG  I +       + E V+S
Sbjct: 665 DLPQLAKG-KGNKIINIPAAKAKEREEVLS 693


>gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
 gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
          Length = 753

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 249/738 (33%), Positives = 381/738 (51%), Gaps = 63/738 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 15  LAEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAA 139
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D     AA RYTE RL + A
Sbjct: 75  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLSRYA 134

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV 
Sbjct: 135 EVLLAELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEVA 194

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           + CV ++DNP  DL A+ + I+GPDFPT A +I     I   Y TG GSI +R V + E 
Sbjct: 195 NACVYLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETGNGSIKMRAVYNQE- 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKR 316
               ++ IV+T +PYQV+ A +LE+IA  +++K++  + DLRDESD +     V++    
Sbjct: 254 ----KQNIVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIVPRSN 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKY 375
               + +++ L+  T L+  + VN   +    KP    L+ I+  ++ +R  VV RR +Y
Sbjct: 310 RVDIEGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLVEIISEWLVYRISVVRRRLEY 369

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K  DR HVL GL IA  N+DEV+ IIR    P   ++ L+ R               
Sbjct: 370 RLAKVLDRIHVLEGLLIAYLNIDEVIAIIREHEQP---KQGLIAR--------------- 411

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        +S+ Q  AILE++L  L  L    +R EL+ L +E      IL+S  
Sbjct: 412 -----------FNISDRQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILASEQ 460

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RL  ++K+E+ + +DE    RR+ I+  +    +++ED +  E + V +S  G+V     
Sbjct: 461 RLKKLVKEEITNDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKGWV----- 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              RA +        +  +  D         ++  +LFF S G VY      LP  S + 
Sbjct: 516 ---RAAKGHDINGCELSFKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLP--SARG 570

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L   L+  +G      +    D+S      V+ A+  G     K+ D    NR+GK
Sbjct: 571 QGEPLTGKLNPAEGALFEAAVGGEADQS------VLLASDAGYGFIAKIGDLYVKNRNGK 624

Query: 674 IAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +KL     IL      + +   I   T  G+ +      I   +      +  I  AK
Sbjct: 625 ACIKLPETSHILPPRILPKHDELFIACATNAGRLLICSTKEIPELSRGKGNKLISIPTAK 684

Query: 732 ----GDQVISMAIVLHAD 745
                + VI + ++   D
Sbjct: 685 VVSREEYVIDIQVLTADD 702



 Score = 44.9 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 105/321 (32%), Gaps = 49/321 (15%)

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           + R  I   QA     + +  L + E I       E     +NL  + A++    +  K 
Sbjct: 409 IARFNISDRQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILASEQRLKKLVKE 468

Query: 663 ------SDFIQINRSGKIA----MKLDSRDEI----LSVETCTQENDILLTTKLGQCVRF 708
                  +F  + RS  I       L   D +    ++V    +     +    G  +  
Sbjct: 469 EITNDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKG---WVRAAKGHDING 525

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              + +      +      +     Q++           Y      +     Q   ++G 
Sbjct: 526 CELSFKAGDDFKAQ----ATARSNQQILFFD---SEGKVYSLPGHVLPSARGQGEPLTGK 578

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                    +++V G             +Q +L  S+ G+G      D  + NR+GK   
Sbjct: 579 LNPAEGALFEAAVGG-----------EADQSVLLASDAGYGFIAKIGDLYVKNRNGKACI 627

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS-- 884
                K+ E   ++    +  +D++ +   ++ G L+     EI   SR  KG  + S  
Sbjct: 628 -----KLPETSHILPPRILPKHDELFIACATNAGRLLICSTKEIPELSRG-KGNKLISIP 681

Query: 885 ----TAKDERVVSVERIRESE 901
                +++E V+ ++ +   +
Sbjct: 682 TAKVVSREEYVIDIQVLTADD 702


>gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047]
 gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047]
          Length = 747

 Score =  499 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 383/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRAT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z]
 gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z]
          Length = 750

 Score =  499 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/743 (31%), Positives = 382/743 (51%), Gaps = 62/743 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+ D  V ++DNP   LD L+ +++GPDFPT A +I  ++ I+  Y  GRGS+ +R
Sbjct: 187 HNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYEQGRGSVKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V   E       +IV+T +P+Q + + + ++IA+ +  K++  + D+RDE+D++     
Sbjct: 247 AVWKKEDG-----EIVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDEADQENPVRL 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V++        D ++N L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILTEWLQFRRAT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+T    LM R        
Sbjct: 362 VTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKTV---LMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L   +++ E   L  E +   
Sbjct: 411 ------------------FKLSDEQAEAILNLRLRHLAKLEETELKAEKARLEEERQHLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            ILSS  RL  +IK+E+        + RR+ +V  E    + + + +  E + V +S +G
Sbjct: 453 QILSSERRLNTLIKKEIQQDAKTYASTRRSPLVEREEAKAISETEMMPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+         Q         +  +  D         ++   +F  S G  Y      L
Sbjct: 513 WVRCAKGHDIDVQN--------LNYKAGDKYLAHAYGKSNQPAVFIDSSGRSYAVDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  +  ++   E++       ++ A+  G     +  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPAGASMEQVLIENENQP------LLMASDAGYGFICQFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +       +LL  T  G+ + FP+  +   +      + 
Sbjct: 617 ARNKAGKAVLTLPENAKVLPPKIIKNSTALLLALTHAGRMLMFPVQELPSLSKGKGNKII 676

Query: 726 GISLAK----GDQVISMAIVLHA 744
           GI  A      D V+ + ++   
Sbjct: 677 GIPAADAKVRSDFVVKLLLISEN 699


>gi|238917146|ref|YP_002930663.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238872506|gb|ACR72216.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 769

 Score =  499 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/766 (32%), Positives = 407/766 (53%), Gaps = 53/766 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ Y+++VI  RA+PD+RDGLKPV RR+L+ M ++G+ ++K + K
Sbjct: 3   EKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L+K    +   DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGM TNIP 
Sbjct: 123 KLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EVVD   A +DN DI  D LM++  GPDFPTG +++ ++ +   Y TG G I +RG
Sbjct: 183 HNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVINKSELGAIYETGTGKIKLRG 242

Query: 253 VSHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               E      +++++V+TEIPY +   N    +  +  L+  K+  DI D+ +ES ++G
Sbjct: 243 KVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A    + N LY+ T L+  F VNM+A+   +PE   +  I+K  + F+ E
Sbjct: 303 IRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVDGRPETLGIKDIIKHHINFQYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+   LL K +    +  GL  A   +D ++ I+R S N + A+  L+  +      
Sbjct: 363 LATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVEGIKF 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K        S  +      +  +E Q  AILE+RL +L GL   +++ E +    +I++ 
Sbjct: 423 K--------SEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL SR  +  +IK +LL++K E    RRT I +G   + +E  I   +++  +   GY
Sbjct: 475 EKILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGEAAVFEEKKIPEMEVMFIMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + + ++ +   +         V  +  +V     V     +  F+  G +++ K+  LP
Sbjct: 535 ARTIDMAAFERNKDA-------VFNENKYV---IPVMNTDKICIFTDTGDLHQLKIKDLP 584

Query: 608 IGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               + +G  + N+ + +   E I  I PF        N  ++F T+ G ++    S+  
Sbjct: 585 FTKFRDKGTPIDNLCNYDSSKEIIVYITPF----ERLKNQKMLFVTRQGMMKLVD-SEEF 639

Query: 667 QINRSGKIAMKLDSRDEILSV----------------------ETCTQENDILLTTKLGQ 704
           Q+ +      KL   D+++ +                      E      ++++ T+ G 
Sbjct: 640 QVAKRTVACTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGV 699

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            ++FP++ I     +++VGVRGI L+K D +  + ++   D    E
Sbjct: 700 FLKFPLTDI-PMKKKSAVGVRGIKLSKDDYIEDVFLLTEGDEFTME 744



 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRS---------GKGIRATDVSKINEI------ 838
           +LK Q +L V+ +G  K   S +F+++ R+          K I         EI      
Sbjct: 616 RLKNQKMLFVTRQGMMKLVDSEEFQVAKRTVACTKLADDDKLIGMYSTDARVEIYSKFSL 675

Query: 839 -GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +     V  N  +I+ ++ G  ++ P+ +I +  ++  GV     +KD+ +  V  +
Sbjct: 676 DGEIKEEEVVESNQNVIVQTENGVFLKFPLTDIPMKKKSAVGVRGIKLSKDDYIEDVFLL 735

Query: 898 RESEI 902
            E + 
Sbjct: 736 TEGDE 740


>gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D]
 gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D]
          Length = 780

 Score =  499 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 250/764 (32%), Positives = 375/764 (49%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YAI+V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPA--EALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRSDAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS +EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y +GRGS+ +R    IE+ +  + Q+VV E+P   +   +LE+I EL   K        
Sbjct: 239 VYESGRGSLKVRARWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 299 -----------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++     +        N L  +TSL+S  ++
Sbjct: 299 SPDQLTMKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           +V+RIIR S  P+ A                                   LS+ Q   IL
Sbjct: 419 DVIRIIRESEEPKAA-----------------------------LIQVFNLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E      +   IV E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRAAAE-VKIVDEPVTVIVSQKGWV--------RTRQGHGHDATQFTFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G  +  G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGG--RGDGVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
                +++      +V +T+ GN    K+ D +   ++GK  + LD  D+         +
Sbjct: 619 FAGHAEQN------LVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPAD 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   ++ G+ + F IS ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSEGGRLLLFQISELKTLAS-GGRGVILMELEKNEALL 715


>gi|33239457|ref|NP_874399.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236982|gb|AAP99051.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 828

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 284/855 (33%), Positives = 455/855 (53%), Gaps = 63/855 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++    +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+   + + 
Sbjct: 3   KERFQPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPERPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  +++G GNFGS+D DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQSFSSRYPVLDGHGNFGSIDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A+   L+++   TVDF  N+DGS QEP VL A+ P +++NG  GIAVGMATNIP
Sbjct: 123 TRLAPIANQALLNEIDDKTVDFSQNFDGSQQEPDVLPAQLPFLVLNGCSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E+++G +A+I  P++  D L+EII GPDFPTG  IL   GIK  Y  G+GSI +R
Sbjct: 183 PHNINEIINGLIALIKKPELSEDKLIEIIPGPDFPTGGEILLSNGIKETYLKGKGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+ +       ++ IV+TE+PYQVNKAA +EK+A+LV   +I  IAD+RDESDR 
Sbjct: 243 GITHIEEINPGKGKHRKKGIVITELPYQVNKAAWIEKLADLVNNSKIDGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+R    +++ + LY+ T+LQ+ FS  ++AL   +P++ +L  +L  F+ +RE
Sbjct: 303 GMRIVIELRRDIDHEIVKDTLYQKTNLQNNFSATLLALVNGQPKQLSLKRLLIIFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             + +RTK  L +   R  +L GL  A+ NL +V+ +I  + +   A+ ++M        
Sbjct: 363 LTIRKRTKNKLKQTLARLEILEGLIKALKNLKKVINLIENAKDSIDAKIKIMSE------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q+  IL + L +LT L    + NE N L I  K 
Sbjct: 417 --------------------LKLNEKQSEGILSMPLRKLTNLETQGLYNEANDLKILEKN 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--------MEDEDCIVREDM 538
             +IL +RS+LL  +  EL  +K +  + R+T++VEG  +        +     + R+  
Sbjct: 457 LREILENRSQLLSEMVNELKLLKKKFGSQRKTKLVEGGDELVAERNANLRPNAELQRKKA 516

Query: 539 VVTVSHLGYVKRVP---LSVYRAQRRGGKGRSGVVMRDEDFV--TDLFIVSTHTSVLFFS 593
             ++   GY+       + + R Q       +   +  E  V    L+ ++    +L  +
Sbjct: 517 FESLPKDGYLLIQDDDQVKILRPQILTKLNLTESCLLGEGPVPTRLLWPIAKQPKILAIT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +   K W      P    + L + L   +GE+IT ++P    E    NL +   + 
Sbjct: 577 NHGKIALLK-WEFAGSQPGQLNRFLPSGL---EGEKITNLLPLLNTE----NLSLGLLST 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  L++ I I+      +KL     + S   C     +L+ T +G+ ++  I+  
Sbjct: 629 DGRFKRTNLNEIIDISGRATTILKLKDGVFLKSALLCPLNGHLLVVTNIGRIIKLKINEE 688

Query: 714 -RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY----DERICYMKH-MSAQRRLISG 767
                G+ + G   I L  G+ +I        +        E+   +KH + + +    G
Sbjct: 689 SIPLMGKLAQGSVMIKLFPGENIIGALTTKEKENCNIILISEKGTVIKHSLKSIKESSKG 748

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D  EI     D + +    ++R  +    +Q +   + +G   R SS        + +  
Sbjct: 749 DLGEIGISFKDKNNQ----KDRLIQTYNAKQLVGIKTNQGKHGRVSSNQIEKLKFNEEQK 804

Query: 828 RATDVSKINEIGALV 842
           +A ++ K   +  ++
Sbjct: 805 KAFNLEKNELLEKII 819



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINE 837
           S +EG         L  +   +  +S  G  KRT+  +   IS R      AT + K+ +
Sbjct: 602 SGLEGEKITNLLPLLNTENLSLGLLSTDGRFKRTNLNEIIDISGR------ATTILKLKD 655

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVE 895
              L +      N  +++V++ G +I++ +NE  I +  +  +G V+      E ++   
Sbjct: 656 GVFLKSALLCPLNGHLLVVTNIGRIIKLKINEESIPLMGKLAQGSVMIKLFPGENIIGAL 715

Query: 896 RIRESE 901
             +E E
Sbjct: 716 TTKEKE 721


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 261/513 (50%), Positives = 345/513 (67%), Gaps = 27/513 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 238 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 297

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 298 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 357

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 358 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 417

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 418 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 477

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 478 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 537

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 538 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 597

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 598 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 649

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 650 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 691

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            IL+    LL +++ EL  ++D     RRT I 
Sbjct: 692 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ 724


>gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4]
          Length = 743

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/796 (30%), Positives = 400/796 (50%), Gaps = 76/796 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   S+ D  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 4   DIEERSLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSASAKYKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYTE 
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL ++G+ TV++ PN+DG+ +E  +L AR P+VL+NG  GIAVGMAT+IP H
Sbjct: 124 RLAPFAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NLGEVV  C+ +++ P   +  L + + GPD+PT A +I   T +   Y TG GS+ +R 
Sbjct: 184 NLGEVVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHGSVRMRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E     +  IV+  +PYQV+ A +LE+IA+ ++ K++  + DLRDESD +    ++
Sbjct: 244 CYTLE-----KGDIVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHENPTRLV 298

Query: 313 ELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
            + R    +V  +++ L+  T L+  + VN+  +    +P+   L  +L  ++ FR E++
Sbjct: 299 LVPRTRRVEVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLAEWLHFRIEII 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L K +DR  +L GL IA  N+DEV+ IIR    P+     LM R         
Sbjct: 359 RRRLQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPKPV---LMAR--------- 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q  AILEL+L  L  L    IR E  +L  E K    
Sbjct: 407 -----------------FELSDRQAEAILELKLRHLMRLEETKIRAEDKALAAERKRLEK 449

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGY 547
           IL S  ++ G++++EL++  ++    RR+ IVE      ++++  +  E + V +S  G+
Sbjct: 450 ILGSERQIKGLLRKELVADVEKFGDARRSPIVERPSATALDEQALLPAEPITVVLSEKGW 509

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           V        RA +      + +  R  D         ++   +F  S G  Y      LP
Sbjct: 510 V--------RAAKSHEVDPTTLSYRTGDGYRASARGRSNQPAIFLDSTGRSYTLPAHGLP 561

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S + +G+ L   L +  G     ++       +   ++ + A+  G     +      
Sbjct: 562 --SARGQGEPLSGHLQVVPGAEFVAVL------LAEPEIFYLMASDAGYGFLCQAKHLYA 613

Query: 668 INRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            NR+GK  + L +    L        +   I + T  G+ + FP+  + +       GV+
Sbjct: 614 KNRAGKAVLNLSAGARALPPVPVADIEVEQIAIATNTGRLLLFPLGELPIMT--RGKGVK 671

Query: 726 GI------SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            I      S  + + V ++A+V    A           + A RR ++  +E++   + + 
Sbjct: 672 LIHIPSPRSAQRQEAVRALAVVPPGGA---------LQIFAGRRHLTLKSEDLEFYRGER 722

Query: 780 SVEGNISEERCQELKL 795
           +  G+      ++++ 
Sbjct: 723 ARRGHTLPRGFRQVEQ 738



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 19/198 (9%)

Query: 688 ETCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                E   ++ ++ G  +  +         + R   G R  +  + +Q      +    
Sbjct: 493 ALLPAEPITVVLSEKGWVRAAKSHEVDPTTLSYRTGDGYRASARGRSNQ--PAIFLDSTG 550

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             Y      +     Q   +SG  + +             +E     L   E F L  S+
Sbjct: 551 RSYTLPAHGLPSARGQGEPLSGHLQVVPG-----------AEFVAVLLAEPEIFYLMASD 599

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+G    +      NR+GK +              VA   V   +QI + ++ G L+  
Sbjct: 600 AGYGFLCQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEV---EQIAIATNTGRLLLF 656

Query: 866 PVNEIRIASRATKGVVIF 883
           P+ E+ I +R  KGV + 
Sbjct: 657 PLGELPIMTRG-KGVKLI 673


>gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20]
 gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
 gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20]
 gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
          Length = 747

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 383/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +   PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46]
 gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46]
          Length = 748

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 256/735 (34%), Positives = 374/735 (50%), Gaps = 59/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +        +  GI +V +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MGKPFEPP--SDRDGIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  L++GQGNFG++
Sbjct: 59  RMLRLDPGTAHKKCARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA+RYTECR+ + A  LLD + +D VDFRPNYDG  +EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAAQRYTECRMTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQ 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I +P      L   ++GPDFPTG V++     I  
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       Q+VVTEIPY V KA ++EK+AEL+ EK++  +AD+
Sbjct: 239 AYRTGRGAFRVRARWTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R     V++  L+R T L+S FS+NM  L   + P    L  +L
Sbjct: 299 RDESAEDVRIVLEPRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R  V+ RR+++ L +   R  +L GL I   +LD+V+RIIR    P   + ELM
Sbjct: 359 REWLDHRRTVLQRRSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEP---KAELM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 416 RH--------------------------FQLTEVQANAILDTRLRSLRKLEEMELKREQA 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMED----E 530
           +L  E  +   +L S       I  ++ +VK          RR   +E   D  D    E
Sbjct: 450 ALTAEKADLDALLDSEPLQWKSIAGQVRAVKKTFGPETALGRRRTTLENPPDTSDLDLAE 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S V  + +D +   F   T   +L
Sbjct: 510 AMIEREPITVIVSQKGWI--------RALKGHVADLSTVQFKGDDALKLSFPTETTAKLL 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G V+     +LP G  +  G  +  +  L++G  I T+ PF           ++F
Sbjct: 562 VLATNGKVFTLDAAKLPGG--RGFGDPIRLMADLDEGSDIVTVFPFRA------GAKLLF 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G          +   R GK  + LD    +         + + +  +    V FP+
Sbjct: 614 GTSDGRGFTTLADGLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGENRLLVVFPL 673

Query: 711 SAIRVFAGRNSVGVR 725
           + I   A     GVR
Sbjct: 674 TEIPDMA--RGKGVR 686


>gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
 gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
          Length = 747

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 385/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +   E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    +
Sbjct: 247 AIWKKEDG-----EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISENDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
 gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
          Length = 747

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 383/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKQEDG-----EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
 gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
          Length = 804

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 255/737 (34%), Positives = 393/737 (53%), Gaps = 32/737 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S D  + K   + ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +
Sbjct: 36  MSDDAPDPKMNPTETLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKL 95

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD P
Sbjct: 96  ASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP 155

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+  AA  LL+ L ++ VDFR NYDG+ +EPVVL A +PN+L NG  GIAVG
Sbjct: 156 AAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVG 215

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATG 244
           MATNIP HNL E++  C+ +I  PD   + LM  I GPDFPTG VI+  +  I  AY TG
Sbjct: 216 MATNIPPHNLEELIGACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAEAYRTG 275

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G   +R    +E     + Q++VTEIPYQV K+ ++EK+AE++  K++  +AD+RDES 
Sbjct: 276 KGGFRLRCKYEVEDLGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADVRDESA 335

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVA 363
                V+    +    +V++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+ 
Sbjct: 336 EDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLD 395

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +V++RR+ + + K   R  VL G  IA  NLD V+ IIR+  +P+ A   LM   W 
Sbjct: 396 HRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKA---LMAEDWG 452

Query: 424 ASDIKDLIDLID-DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            + ++ + +         +  +  M L++VQ  AIL +RL  L  L   ++  E ++L +
Sbjct: 453 KTHVRAMDEADYVSPLTALVGEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALML 512

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEG--LLDMEDEDCIVR 535
           E     D+L S       I ++L   +           RRT   E   + D+  E  I +
Sbjct: 513 ERAGLEDLLDSDDLQWKTIAEQLRETRKLFGSNSKGGARRTAFAEAGVIEDVPLEAMIDK 572

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V  S +G+++ +   +  A          +  +D D    +F   T   +L F S 
Sbjct: 573 EPVTVVCSKMGWIRAMTGHIDLA--------RELKFKDGDEGRFVFHAQTTDRLLVFGSN 624

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y      LP G  +  G+ L  ++ L     I  +              ++  +  G
Sbjct: 625 GRFYTLGASTLPGG--RGMGEPLRLMVDLPNEAEIVALFIHRA------GNRLMIVSSAG 676

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           +       D I   R+GK A+ +   D    V +    + +    +  + + FP+  +  
Sbjct: 677 DGFIVPEDDVIAQTRAGKQALNVK-GDVRAKVCSTVIGDHVACVGENRKVLLFPLDELPE 735

Query: 716 FAGRNSVGVRGISLAKG 732
                  GVR      G
Sbjct: 736 MG--RGKGVRLQKYKDG 750



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      ++ VS  G G      D     R+GK           ++ + V        D 
Sbjct: 662 IHRAGNRLMIVSSAGDGFIVPEDDVIAQTRAGKQALNVKGDVRAKVCSTVI------GDH 715

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  V +   ++  P++E+    R  KGV +      
Sbjct: 716 VACVGENRKVLLFPLDELPEMGRG-KGVRLQKYKDG 750


>gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
 gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
          Length = 777

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 245/773 (31%), Positives = 384/773 (49%), Gaps = 75/773 (9%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPDADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 ------------------LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES ++    ++   +  + D    +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L++ Q   I
Sbjct: 421 DEVIRIIRDADEPKAA-----------------------------LMSAFGLTDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIETDAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I +      +   +      V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 TLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RALKGHGLDPAGFTFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G  +  G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPVTSLIELESGSHLMHYYAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQ 692
            D+       ++ A+ +G     K+ D +   ++GK  M +D+        +  +     
Sbjct: 621 VDQQ------LLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPLAPMPVLPN 674

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A 
Sbjct: 675 ATQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAG 726



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q +L  S  GFG      D     ++GK     D         L  +  + +  Q+  +
Sbjct: 622 DQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPLAPMPVLPNATQVACL 681

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           S  G L+   ++E++  S   +GV++ +    E +V    I  + +V
Sbjct: 682 SSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLVQALAIDPAGVV 728


>gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069]
 gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069]
          Length = 746

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 242/746 (32%), Positives = 380/746 (50%), Gaps = 63/746 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++   KY K
Sbjct: 4   EGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 64  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL +LG+ TV++ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 124 SRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATDIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV +++NP  +L  L+E I+GPDFPT A +I  R  I   Y  GRGSI +R
Sbjct: 184 HNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSIRMR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E        IV+T +P+Q + + +LE+IA  ++ K++  ++DLRDESD +    +
Sbjct: 244 ARFEKEDGD-----IVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 298

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           +   R      + ++  L+  T L+  + VNM  +    +P+   L  +LK ++ FR E 
Sbjct: 299 VIEPRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFRHET 358

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K  DR H+L GL IA  N+DEV+ IIR    P   + +LM+R        
Sbjct: 359 VRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKP---KLKLMER-------- 407

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  +ILEL+L  L  L    I+ E + L  E     
Sbjct: 408 ------------------FDLSDRQAESILELKLRHLAKLEEMKIKGEQSELEDEADWLQ 449

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
             L S+ R+  +IK+E+  V ++    RR+ IVE      + + + +  E + V +S  G
Sbjct: 450 LTLGSKQRMKTLIKKEIEEVIEQYGDDRRSPIVERKEAKALSETELLPTEPVTVILSEKG 509

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +       G+  R  D   D     ++   +F  S G  +      L
Sbjct: 510 WV--------RCAKGHDVDAVGMNYRSGDKYLDSAQGKSNQYAVFLDSTGRTFSLLANTL 561

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ +   ++   G      M   +D+        +FAT  G     K SD +
Sbjct: 562 P--SARGLGEPVTGRVNPIAGAEFMATMMGEDDDK------FLFATDAGYGFVAKFSDLV 613

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              R+GK  + L S  +++   +         +  +  G+ + FP++ +   A      +
Sbjct: 614 TKTRNGKAFLNLPSGSKVVKPCSVKDSASQFCVAVSNEGRMLVFPLADLPELAKGKGNKI 673

Query: 725 RGISLAK----GDQVISMAIVLHADA 746
             I  AK     + +I++  +   D+
Sbjct: 674 ISIPTAKLKLREEFMIAVTAIGEDDS 699


>gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
 gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
          Length = 756

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 390/757 (51%), Gaps = 69/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGI 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT+IP HN  EV +  V ++DNP  DLD LME ++GPD+PT A I+     +K
Sbjct: 174 TGIAVGMATDIPPHNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDLK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R + H E        IV+T +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 234 KVYKSGRGSIRMRAIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVED 288

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R     ++ ++N L+  T L+  F VN+  L    +P    L+
Sbjct: 289 LRDESDHENPTRIVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLL 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   NP   + 
Sbjct: 349 EIITEWLVFRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENP---KA 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS +Q  AILE++L +L  L    IR 
Sbjct: 406 ELMSR--------------------------FELSVIQADAILEIKLRQLAKLEEIKIRG 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E      +L S  RL  +IK+E+ +  ++    RR+ +VE      + + D I
Sbjct: 440 EQDELAKERDYLEKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      + +  +  D         ++   +   
Sbjct: 500 PSEAITVVLSEKGWI--------RHAKGYDVDPTSLSYKSGDNYLAHARGKSNLPAILIG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   +DE  W     +  + 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPVTGRLNLTPGTNLRQVL-MADDEQMW-----LMGSD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K +D +  N+SGK  + +  + ++++ +  +    ++IL+ T  G+ + FPI 
Sbjct: 604 AGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            +          +  I        ++ +S  IVL   
Sbjct: 664 DLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQG 700



 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DN 850
           +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  P++  D 
Sbjct: 591 MADDEQMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVP-----EKAKVMAPQPISNLDT 645

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D+I++++++G ++  P+ ++    +  KG  I + 
Sbjct: 646 DEILVITNEGRMLLFPIKDLPQLGKG-KGNKIINI 679


>gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 750

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 245/750 (32%), Positives = 388/750 (51%), Gaps = 62/750 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV    + +IDNP  +L  +ME ++GPD+PT A I+  +  ++  Y TGR
Sbjct: 182 ATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E       +I++T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWKKE-----GPEIIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D ++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILAEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +R   V RR +Y L+K   R HVL GL +A  NLDEV+ IIR    P   + ELM R  
Sbjct: 357 EYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIRNEDEP---KAELMSR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E+Q  AIL+ +L  L  L    IR E   L  
Sbjct: 412 ------------------------FGLTEIQADAILDTKLRHLAKLEEMKIRGEQEELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVV 540
           E K+   +L S  RL  ++K+E+ +  ++    RR+ ++  E    + + D +  E + V
Sbjct: 448 ERKKLETLLGSERRLNTLLKKEIEADAEKYGDDRRSPLIEREEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +      + +  +  D         +   V+   S G  Y 
Sbjct: 508 VLSDKGWV--------RHAKGHELDPATLNYKSGDKYLAHARGKSSQPVVLLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L+++ G  I   +   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNISSGSNIRH-LVMGEEEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  ++SGK  + L    E+L          ++IL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSDEILAVTNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHAD 745
                +  I  AK    D+ +S  I L   
Sbjct: 672 GKGNKIINIPAAKAKSRDEFVSHLIALPKG 701



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ +  G         +         G + ++ A+G     + ++      Y
Sbjct: 499 LVPSEPITVVLSDKGWVRHAKGHELDPATLNYKSGDKYLAHARGKSSQPVVLLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G     +            S  R   +  +EQ  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLNISSG-----------SNIRHLVMGEEEQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    ++SGK +     S        +      D+D+I+ V+++G ++  P+ 
Sbjct: 608 GFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHL---DSDEILAVTNQGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 665 DLPQLGKG-KGNKIINI 680


>gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 793

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/813 (31%), Positives = 395/813 (48%), Gaps = 78/813 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E G   +++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF M +MG+  + 
Sbjct: 31  DLNEDGKDGLTLAVYAERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGLRADA 90

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K VK AR+ G+V+GK+HPHG+ + YDAL R+AQ +SLR  LI+GQGNFGS DGD  AA R
Sbjct: 91  KPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMR 150

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL ++ + TVDF PNYDGSFQEP +L AR P VL+NG  GIAVGMAT 
Sbjct: 151 YTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATE 210

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           IP+HNL EV    +A++ +P +    L+ I+ GPD+P G  I+     I   Y TGRGSI
Sbjct: 211 IPSHNLREVASAAIALMKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETGRGSI 270

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD---------- 298
            +R    +E+ +  + QIVV E+P   +   +L++I E+   K  V              
Sbjct: 271 KVRARWSVEELARGQWQIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQNNLKS 330

Query: 299 --------LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVAL-NGY 347
                   +RDES +     ++   +  + DV   +N L  +TSL+S   +N+V + N  
Sbjct: 331 TILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDG 390

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P +  L  IL  +V FR   V RRT+Y L K +DR H+L G  I + N+D+V++IIR S
Sbjct: 391 RPRQKGLKEILSEWVEFRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKIIRNS 450

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P++                                    LS+ Q   IL++RL +L  
Sbjct: 451 DEPKS-----------------------------DLIKEFKLSDRQAEDILDIRLRQLAR 481

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L    I  EL  L  E  +   +L S + L   I +E+ S   +    RRT I E    +
Sbjct: 482 LEGIKIEQELKQLQTERDDLEGLLQSDAVLRKRIIKEIESDLKDFGDDRRTLIQEDKRAV 541

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
            +   ++ E + V VS  G+V        R ++      +    +  D +   F V T  
Sbjct: 542 AE-TKVIDEPVTVIVSQKGWV--------RVRQGHEHDATQFSFKAGDALYGTFEVRTID 592

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +  F S G VY  +V  LP    +  G  L + ++L  G ++        D+       
Sbjct: 593 VIQGFGSDGRVYTVQVSELPGA--RGDGSPLTSFVNLATGSQMVAYYAGQPDD------L 644

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD----SRDEILSVETCTQENDILLTTKLG 703
           V+ +TK G      +SD    N++GK  + +D        + + +       +   ++  
Sbjct: 645 VLLSTKAGYGFLANVSDMSTRNKAGKSFISVDSKVPGDAPLGAAKVKVGMKQVACLSEAS 704

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + + F +  ++        GV  + L   + + S   V    A Y          + +  
Sbjct: 705 KLLVFSLDELKRLPT-GGKGVILMGLDDKEFLASAIAVGSDGATYSGAG-----RAGKPT 758

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +S D + + S   + + +G+  E R ++ KLK
Sbjct: 759 ELSLDAKTLKSFAGNRARKGHFVEPRLKDGKLK 791



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 123/352 (34%), Gaps = 30/352 (8%)

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV     R Q R GK +  + + +   +  L   +    +    +      + +    + 
Sbjct: 408 RVSTVTRRTQYRLGKVKDRMHILEGRLIVLL---NIDKVIKIIRNSDEPKSDLIKEFKLS 464

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN------KLS 663
             QA     I +  L + E I       + ++  ++L  +  +     +R        L 
Sbjct: 465 DRQAEDILDIRLRQLARLEGIKIEQELKQLQTERDDLEGLLQSDAVLRKRIIKEIESDLK 524

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVFAGRNS 721
           DF    R+      +      ++      E   ++ ++ G  +  +        F+ +  
Sbjct: 525 DFGDDRRT-----LIQEDKRAVAETKVIDEPVTVIVSQKGWVRVRQGHEHDATQFSFKA- 578

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
               G +L    +V ++ ++    +D       +  +   R    GD   +TS  N ++ 
Sbjct: 579 ----GDALYGTFEVRTIDVIQGFGSDGRVYTVQVSELPGAR----GDGSPLTSFVNLATG 630

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              ++    Q     +  +L  ++ G+G   +  D    N++GK   + D SK+     L
Sbjct: 631 SQMVAYYAGQP----DDLVLLSTKAGYGFLANVSDMSTRNKAGKSFISVD-SKVPGDAPL 685

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            A        Q+  +S+   L+   ++E++      KGV++      E + S
Sbjct: 686 GAAKVKVGMKQVACLSEASKLLVFSLDELKRLPTGGKGVILMGLDDKEFLAS 737


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/513 (50%), Positives = 345/513 (67%), Gaps = 27/513 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 238 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 297

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 298 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 357

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           +TE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 358 FTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 417

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 418 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 477

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 478 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 537

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 538 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 597

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 598 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 649

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 650 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 691

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            IL+    LL +++ EL  ++D     RRT I 
Sbjct: 692 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ 724


>gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 748

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 376/745 (50%), Gaps = 70/745 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + E E     +++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTKVAPPPEPEHE-----INLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + K AR+ G+V+G+YHPHG+ ++YDAL R+AQ +S+R  L++GQGNFG+V
Sbjct: 56  RQLKLDPGSGFKKSARVVGDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNV 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LL+ + +DTVDFR  YDG   EP VL   +P +L NG  
Sbjct: 116 DGDNAAAMRYTEARLTEVAAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAA 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +P+   + L+E ++GPDFPTG +I+  R  +  
Sbjct: 176 GIAVGMATSIPPHNAAELCDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLE 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E+      QIVVTEIPYQV K+ ++EKIAEL++ +++  + D+
Sbjct: 236 AYETGRGGFRVRARWEQEELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDV 295

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGIL 358
           RDES  +   V++   R      ++  L+R T L++ F +NM  L+  +     +L G+L
Sbjct: 296 RDESAEEIRLVLVPKARTVDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVL 355

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +A++  R+ V+VRR+ + L+K   R  VL G   A  NLDEV+RIIR    P+ A     
Sbjct: 356 RAWLEHRKVVLVRRSNFRLDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPA----- 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E  
Sbjct: 411 ------------------------LIKKFKLTDNQAEAILNMRLRSLRKLEEMEIRGEHK 446

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE--GLLDMEDED 531
            L  E K    ++ S  +    +  E+  VK           RRT+  +   +  +  E 
Sbjct: 447 ELSAEQKALKSLVKSEDKQWARVADEIKEVKALFGPKTALGARRTKFSDAPAIEYVPMEA 506

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV----VMRDEDFVTDLFIVSTHT 587
            I +E + V  S  G++            R  KG  G       ++ D    L    T  
Sbjct: 507 MIEKEPVTVVCSKKGWI------------RTMKGHVGPDTEIKFKEGDAGRFLLHAETTD 554

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            VL F++ G  Y   V +LP G  +  G+ +  ++ L++   +  +              
Sbjct: 555 KVLLFATDGRFYTLDVTKLPGG--RGNGEPVRLMIDLDESHEVVELFV------HQPGRK 606

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ A+  GN       + + + R+GK  + +  +DE ++         + +     + + 
Sbjct: 607 LIVASHEGNGFIVPEDEVVAMRRAGKQVLNVTGKDEAIACAPVQG-THVAVIGDNRKLLI 665

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG 732
           FP+  +         GVR    A G
Sbjct: 666 FPVKEVNEMT--RGKGVRLQRYADG 688


>gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
 gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
          Length = 808

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 261/829 (31%), Positives = 405/829 (48%), Gaps = 83/829 (10%)

Query: 8   SDEEEEKGITS---VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           SD  + + ++      +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ 
Sbjct: 2   SDTPDPENVSPDLIEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELR 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +     + K A+ISG+VMG YHPHG+ AIYDA+AR+AQD+++R  L++GQGNFG++DGD 
Sbjct: 62  LSSAGGFRKSAKISGDVMGNYHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDN 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE R+  AA  LLD L +D VDFR NYDG+  EPVVL A +PN+L NG  GIAV
Sbjct: 122 PAASRYTEARMTAAAEALLDGLNEDAVDFRANYDGTLTEPVVLPAAFPNLLANGSSGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYAT 243
           GMATNIP HN+ E+V  C+ +I  PD   + L+  I GPDFPTG V++  R  I   Y T
Sbjct: 182 GMATNIPPHNIDELVQACLHLIKTPDARDETLLNYIPGPDFPTGGVLVEPRESIAETYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG+  +R   H E     + QI+VTEIP+QV K+ ++EK+AE+++ K++  + D+RDES
Sbjct: 242 GRGAFRLRCRWHTEDLGRGQWQIIVTEIPFQVQKSKLIEKLAEVIQTKKVPILGDVRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFV 362
                 V+    +    DV++  LYR + L++ FS+NM V ++G  P+  +L  +L+AF+
Sbjct: 302 AEDIRIVLEPRSKNVDPDVLMGMLYRSSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EV++RR+++ + K   R  VL GL +A  +LD V+ IIR+  +P+ A   LM   W
Sbjct: 362 DHRREVLLRRSRHRMAKIDHRLEVLEGLIVAFLHLDRVIDIIRYDDDPKAA---LMYEDW 418

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMY---------------------------------- 448
                  +     ++ Y     G                                     
Sbjct: 419 GRPHQSTIARATSEADYVSPLAGVDRAGLVLVADPAAGVPAVLGDEPVQAGVPRRYAGRE 478

Query: 449 --LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             LS+VQ  AIL +RL  L  L   ++  E + L  E  E  D+L + S     I ++L 
Sbjct: 479 QGLSDVQAEAILNMRLRSLRRLEELELVAERDRLMAERAELEDLLETGSLQWAKIAEQLR 538

Query: 507 SVKDEL-----DTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
            V+ +         RRT   E   + ++  E  I RE + +  S +G++        RA 
Sbjct: 539 EVRAQFGAKAPGGARRTTFAEAGEVEEVPLEAMIEREPVTIVCSQMGWI--------RAL 590

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
                    +  +D D    +F   T   +L F S G  Y      LP G  +  G+ + 
Sbjct: 591 TGHIDLNRELKFKDGDGPRFIFHAETTDRLLLFGSNGRFYTLSAANLPGG--RGMGEPVR 648

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            ++ L    RI  +              ++ A+  G+       + +   R+GK  + + 
Sbjct: 649 LMVDLPNEARIVDLFIHR------PGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLNVR 702

Query: 680 SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           +  +      C     + + +  +  + + FP+  +         GVR      G     
Sbjct: 703 APAQ---ARICHPVSGDHLAVVGENRKVLVFPLDQLPEMG--RGKGVRLQKYKDG----- 752

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                 +DA        +       R  +   +E+   + + +  G ++
Sbjct: 753 ----GLSDATTFTLAEGLSWRDPAGRTRTVGPDELAEWQGNRAGSGRMA 797



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      +L  S  G G   +  +     R+GK +          I   V+       D 
Sbjct: 664 IHRPGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLNVRAPAQARICHPVS------GDH 717

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + +V +   ++  P++++    R  KGV +      
Sbjct: 718 LAVVGENRKVLVFPLDQLPEMGRG-KGVRLQKYKDG 752


>gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901]
 gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901]
          Length = 748

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 386/759 (50%), Gaps = 67/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +    +E+     + +    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTESTLVPYADEQ-----LPLKVFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQ 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL      LL +L + TV++ PN+DG+  EP VL AR P VL+NG 
Sbjct: 116 DDPKSFAAMRYTEARLSAFTEVLLSELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVVD  + +++NPD D   L E I GPD PT A +I  +  ++
Sbjct: 176 TGIAVGMATDIPPHNLREVVDATIHLLENPDADNAQLCEFIPGPDMPTDAEIITPKADLQ 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS+ +R V   E+       IV+T +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 236 KVYETGRGSMKMRAVWRKEEGD-----IVITALPHQVSGAKILEQIAAQMQAKKLPMVAD 290

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        + ++N L+  T L+  + +N+  +    +P   +L 
Sbjct: 291 LRDESDHENPIRLVIVPRSNRIDQEAVMNHLFATTDLERSYRINLNMIGIDGRPGVKSLR 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ +++FR   V RR ++ L+    R H+L GL IA  NLDEV+ IIR   +P   ++
Sbjct: 351 EILQDWLSFRMVTVRRRLQHRLDWVERRLHLLDGLLIAFLNLDEVIHIIRTEDHP---KQ 407

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            LSE Q   IL+ RL +L  L    IR+
Sbjct: 408 KLMER--------------------------FELSEDQANYILDTRLRQLARLEEMKIRD 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E  E   IL S  RL  +IK+ELL+V DE    RR+ +VE        + + I
Sbjct: 442 EQQKLEKERDELQKILDSARRLKTLIKKELLAVVDEFGDARRSPMVERSEAQAFSETELI 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R+ +      S +  +  D         +  + L   
Sbjct: 502 SSEPVTVVLSEKGWI--------RSAKGHDIDPSALSYKAGDSFRVAARGKSSQATLLLD 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ +   L+   G     ++   + +       V+ A+ 
Sbjct: 554 STGRSYALPTHTLP--SARGQGEPVTGRLNPPSGAVFEGLLMGDDTQK------VLLASD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPIS 711
            G      LSD    NRSGK  + + +   +L+ +    T  + +   +  G+ + FP+S
Sbjct: 606 AGYGFIASLSDLYTKNRSGKAMLSVPAGGRVLAPQLLETTDASWLAAFSNEGRLLAFPVS 665

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +   A      +  I    +   ++ +   +V +  + 
Sbjct: 666 ELPELARGKGNKIINIPAARVQSREEFVVALVVFNEKST 704



 Score = 41.4 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851
           +    Q +L  S+ G+G   S  D    NRSGK + +         G ++A   +   D 
Sbjct: 593 MGDDTQKVLLASDAGYGFIASLSDLYTKNRSGKAMLSVP-----AGGRVLAPQLLETTDA 647

Query: 852 -QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRE 899
             +   S++G L+  PV+E+   +R  KG  I +       +++E VV++    E
Sbjct: 648 SWLAAFSNEGRLLAFPVSELPELARG-KGNKIINIPAARVQSREEFVVALVVFNE 701


>gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
 gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
          Length = 809

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 269/774 (34%), Positives = 407/774 (52%), Gaps = 71/774 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNS----YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           SD++ +  + + ++ + ++ +    YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++
Sbjct: 2   SDDDLDPNMNARNLAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRRL 61

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD
Sbjct: 62  RLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGD 121

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+   +  LL+ L +++VDFRPNYDG  +EP VL A YPN+L NG  GIA
Sbjct: 122 NPAASRYTEARMTVMSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIA 181

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMATNIP HN+GE+++ C+ +I +P+   D LM+ + GPDFPTG VI+     I  AY 
Sbjct: 182 VGMATNIPPHNIGELINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIATAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +R   H+E     + Q VVTEIPYQV K+ ++E+IAEL++ K+I  +AD+RDE
Sbjct: 242 TGRGSIRLRARWHVEDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADVRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAF 361
           S      V+    +    D+++N L+R + L+  FS+NM V ++G  P+  +L   L+AF
Sbjct: 302 SADDIRMVLEPKTKNVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKECLRAF 361

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR +V++RR+K+ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A   LM   
Sbjct: 362 LDFRRDVLIRRSKHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LMYED 418

Query: 422 WNASDIKDLIDLIDDSSYTIGSDG------------------------------------ 445
           W+      +    D+  Y     G                                    
Sbjct: 419 WSRPHQSTIPRATDERDYRSPLTGVDVKALELRDDPDAVERGVLADDGTSSAVPRRFVGR 478

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
           +  LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S     G IK+EL
Sbjct: 479 SEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEEL 538

Query: 506 LSVKDEL-----DTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
             VK           R T   E     D+  E  I RE + V  S +G+++ +   +  A
Sbjct: 539 NEVKKTFTKGYKRGQRLTTFAEATEAEDVPLEAMIEREPVTVVCSKMGWIRAMTGHI--A 596

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
             R  K       +D D    +F   T   +L F S G  Y      LP G  +  G+ L
Sbjct: 597 LDRELK------FKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGG--RGMGEPL 648

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             ++ L     I  I+             ++ A+  G+       + I   R+GK  + +
Sbjct: 649 RLMVDLPNDTEIVDILVHR------PGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNV 702

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
               + +  +  +  N + +  +  + + F +  +         GVR      G
Sbjct: 703 KDPVKAMICKPVSG-NAVAVVGENRKVLIFMLDELPEMG--RGKGVRLQKYKDG 753



 Score = 38.4 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD---VSKINEIGALVAVFPVND 849
           +    Q +L  S  G G      +     R+GK +        + I +  +  AV  V +
Sbjct: 665 VHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNVKDPVKAMICKPVSGNAVAVVGE 724

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           N ++++           ++E+    R  KGV +      
Sbjct: 725 NRKVLIFM---------LDELPEMGRG-KGVRLQKYKDG 753


>gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
 gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
          Length = 780

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/768 (33%), Positives = 377/768 (49%), Gaps = 76/768 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I+   EE     S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDITFQPEEPAD--SLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LLD++ + TVDF  NYDGS +EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT +P HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+     I  
Sbjct: 179 GIAVGMATEVPPHNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            Y +GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYESGRGSLKVRARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKAL 298

Query: 298 ----------------DLRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++   +  +      +  L  +TSL+S   V
Sbjct: 299 TPEQQQLKASVLAVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPV 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RRT+Y L K  DR H+L G  + + N+D
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNID 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A   LM+R                            LS+ Q   IL
Sbjct: 419 EVIRIIRESDEPKPA---LMER--------------------------FGLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DT 514
           E+RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +       
Sbjct: 450 EIRLRQLARLEAIRIEKELKDLREEQADLDVLLKSDTMMRRRIIKEIETDAKQYSPEDKD 509

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           PRRT I E      +   +      V VS  G+V        R ++  G        +  
Sbjct: 510 PRRTLIQEERRAAAEVRVVDEPVT-VVVSQKGWV--------RTRQGHGHDAQQFTFKAG 560

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D + D F   T   +L F + G VY   V  LP G  +  G  L  ++ L  G +I    
Sbjct: 561 DALYDTFECRTIDVLLAFGTNGRVYSVPVASLPGG--RGDGVPLTTLIELQPGSQIAHTF 618

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQE 693
               ++       ++ AT+ GN    K++D     + GK  + LD  D  +      ++ 
Sbjct: 619 AGSAEQR------MLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDGDAPLTPAPIASEA 672

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             +   +  G+ +   +  ++V +     GV  + L   ++++    V
Sbjct: 673 THVACLSGNGRLLLVALDEVKVLSA-GGRGVILMELEPKEKLLQAVGV 719



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            EQ +L  ++ G G  T   D     + GK     D    +    L      ++   +  
Sbjct: 622 AEQRMLIATQGGNGFLTKIADMTGRQKGGKSFLTLD----DGDAPLTPAPIASEATHVAC 677

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +S  G L+ V ++E+++ S   +GV++      E++
Sbjct: 678 LSGNGRLLLVALDEVKVLSAGGRGVILMELEPKEKL 713


>gi|7404425|sp|P73077|PARC_SYNY3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 920

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 287/956 (30%), Positives = 458/956 (47%), Gaps = 105/956 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M      S +     I    + +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MARKSFPSGQ-----IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM QD+S R  L+ G GNFGSV
Sbjct: 56  YELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSV 115

Query: 121 DGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   A   + + + +  VDF  N+D S +EP V+ A+ P +L+NG 
Sbjct: 116 DNDPPAAMRYTETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGC 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP HNLGEVVDG + +I+ PD+    L ++I GPDFPTG  IL   GI  
Sbjct: 176 SGIAVGMATSIPPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQ 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIV------VTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RGVSHIE   G++++        +TE+P+QVNKAA +EKIA LV + ++
Sbjct: 236 AYQTGRGLIPVRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKL 295

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+DLRDESDR G RVVIELKR A  + IL +LYR T LQS F V  +AL   +P + +
Sbjct: 296 DGISDLRDESDRTGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMS 355

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL+ F+ FRE+ ++R+ +  L + R R  +L GL I + NLD ++ I+RF+ +  TA
Sbjct: 356 LRQILQEFLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTA 415

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +L +R                          + +S  Q  AIL + + R+TGL R+ +
Sbjct: 416 KIQLQER--------------------------LGISLQQGDAILGMPMRRITGLEREKL 449

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------- 523
           + E   L   I++   ++  R   L  +K+EL  +K +    RRT+I++G          
Sbjct: 450 QQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKILQGMPAKIEPLPV 509

Query: 524 -------------------LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                                +++      +E +V+  S        P +         K
Sbjct: 510 NQDPLPEATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVK 569

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA--RGKALINIL 622
                V ++     ++    TH+ ++  +             P   P        L   +
Sbjct: 570 PTPKTVKQEAQPSPEVIA--THSKLVSVAEKN----PLTLFTPQTPPAEAFLSINLQGEI 623

Query: 623 SLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           + +  E     +  P  +  S      ++    HG      ++D   +  +    +++  
Sbjct: 624 AWHPEELTSANSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILP 683

Query: 681 RDEILSVETCTQE---------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           +       T T +          D+LL ++ G+        ++    R   G+  + L  
Sbjct: 684 KSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGPR---GLSLMKLKN 740

Query: 732 GDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEI------TSLKNDSSVEGN 784
           GD +    +V     A        +   ++  RL+  D  ++       S +   ++   
Sbjct: 741 GDLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLR 800

Query: 785 ISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +E     L       +L +++ G+GK+      R+ N    G      +  ++   L+ 
Sbjct: 801 ATESLVGVLMASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFT--SKADRLLT 858

Query: 844 VFPVNDNDQ------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +   N   Q          S++  L  V  ++ +   +   G  +    + E +++
Sbjct: 859 MVAANQGAQSPQSSTYDFYSNQQRLHSVQADQFQPWGKDGFGDRLVDLNEGEHLIT 914


>gi|16329694|ref|NP_440422.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
 gi|1652178|dbj|BAA17102.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 944

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 287/956 (30%), Positives = 458/956 (47%), Gaps = 105/956 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M      S +     I    + +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 25  MARKSFPSGQ-----IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 79

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM QD+S R  L+ G GNFGSV
Sbjct: 80  YELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSV 139

Query: 121 DGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   A   + + + +  VDF  N+D S +EP V+ A+ P +L+NG 
Sbjct: 140 DNDPPAAMRYTETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGC 199

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP HNLGEVVDG + +I+ PD+    L ++I GPDFPTG  IL   GI  
Sbjct: 200 SGIAVGMATSIPPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQ 259

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIV------VTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RGVSHIE   G++++        +TE+P+QVNKAA +EKIA LV + ++
Sbjct: 260 AYQTGRGLIPVRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKL 319

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+DLRDESDR G RVVIELKR A  + IL +LYR T LQS F V  +AL   +P + +
Sbjct: 320 DGISDLRDESDRTGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMS 379

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL+ F+ FRE+ ++R+ +  L + R R  +L GL I + NLD ++ I+RF+ +  TA
Sbjct: 380 LRQILQEFLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTA 439

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +L +R                          + +S  Q  AIL + + R+TGL R+ +
Sbjct: 440 KIQLQER--------------------------LGISLQQGDAILGMPMRRITGLEREKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---------- 523
           + E   L   I++   ++  R   L  +K+EL  +K +    RRT+I++G          
Sbjct: 474 QQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKILQGMPAKIEPLPV 533

Query: 524 -------------------LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                                +++      +E +V+  S        P +         K
Sbjct: 534 NQDPLPEATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVK 593

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA--RGKALINIL 622
                V ++     ++    TH+ ++  +             P   P        L   +
Sbjct: 594 PTPKTVKQEAQPSPEVIA--THSKLVSVAEKN----PLTLFTPQTPPAEAFLSINLQGEI 647

Query: 623 SLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           + +  E     +  P  +  S      ++    HG      ++D   +  +    +++  
Sbjct: 648 AWHPEELTSANSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILP 707

Query: 681 RDEILSVETCTQE---------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           +       T T +          D+LL ++ G+        ++    R   G+  + L  
Sbjct: 708 KSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGPR---GLSLMKLKN 764

Query: 732 GDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEI------TSLKNDSSVEGN 784
           GD +    +V     A        +   ++  RL+  D  ++       S +   ++   
Sbjct: 765 GDLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLR 824

Query: 785 ISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +E     L       +L +++ G+GK+      R+ N    G      +  ++   L+ 
Sbjct: 825 ATESLVGVLMASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFT--SKADRLLT 882

Query: 844 VFPVNDNDQ------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +   N   Q          S++  L  V  ++ +   +   G  +    + E +++
Sbjct: 883 MVAANQGAQSPQSSTYDFYSNQQRLHSVQADQFQPWGKDGFGDRLVDLNEGEHLIT 938


>gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
 gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
          Length = 761

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 241/752 (32%), Positives = 394/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A 
Sbjct: 612 KGADLLSKNRSGKALVTLPANSEVMTPKAIEDLDSDEILAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++V+S  + L   A 
Sbjct: 672 GKGNKIINIPAAKAKEREEVLSHLMSLPKGAS 703



 Score = 42.2 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  ++Q  L  S+ G+G      D    NRSGK +        N         
Sbjct: 585 SSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTL---PANSEVMTPKAI 641

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 642 EDLDSDEILAITNQGRMLLFPIKDLPQLAKG-KGNKIINIPAAKAKEREEVLS 693


>gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126]
          Length = 761

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 239/812 (29%), Positives = 402/812 (49%), Gaps = 74/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDEII----INRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SDLGLSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L + +  LL++LG+ TVD+ PN+DG+  EP VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEAKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+ + C  ++DN   +L  ++E + GPD+PT A +I  ++ I+
Sbjct: 177 TGIAVGMATDIPPHNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E        +V+T +P+Q + A +LE+IA  ++ K++  ++D
Sbjct: 237 KLYETGRGSIKMRAVYMEENGD-----VVITALPHQASGAKILEQIAAQMQAKKLPMVSD 291

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++   R    DV  ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPTRLVITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ +R++ V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + 
Sbjct: 352 TILSEWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKP---KP 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AILEL+L  L  L    I+ 
Sbjct: 409 ELMAR--------------------------FGLSDTQAEAILELKLRHLAKLEEMKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +L S  RL  +IK+E+L+  ++    RR+ IVE      + +++ +
Sbjct: 443 EQDELAEERDKLQQLLGSDRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D         ++   +F  
Sbjct: 503 PAESVTVVLSEKGWA--------RCAKGHDIDAEGLSYKAGDAYLSSAEGKSNQPAVFMD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ L    S+  GE    ++       + +    +  + 
Sbjct: 555 SSGRTFSCDAHGLP--SARSQGEPLTGRFSIVGGESFQHVIM------AQDESKFLVGSD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +  +++          +  L  +  G+ + FP+ 
Sbjct: 607 AGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSDWCLSISNEGRMLMFPLR 666

Query: 712 AIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +          +  I  AK    ++ + +  V+   A           + A +R ++  
Sbjct: 667 DLPSLGKGKGNKLINIPSAKSQSREEYVKVLAVVPDGAAIK--------VGAGKRNMTLT 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            +++T  + +    GN      Q +   E  +
Sbjct: 719 ADDLTHYQGERGRRGNKLPRGLQRVDTVEVVL 750


>gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601]
          Length = 807

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 261/777 (33%), Positives = 395/777 (50%), Gaps = 69/777 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+       + +    +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MND-IVDDPNMNPRDVAE-PLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  N  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RRLRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L +++VDFRPNYDG  +EP VL A YPN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTIMAEALLDGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+GE++D C+ +I  P    D L++ + GPDFPTG VI+  R  I  
Sbjct: 179 GIAVGMATNIPPHNIGELIDACLHLIKAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R    +E     + Q VVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGSIRLRAKWEVEDLGRGQWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    D+++N L++ + L++ FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESAEDIRMVLEPKSKNVDPDLLMNMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR +V+ RR ++ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDFRRDVLCRRARHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG--------------------------------- 445
              W+      +    D+  Y     G                                 
Sbjct: 416 YEDWSKPHQATIARATDERDYRSPLAGIDVKALELRPDPEAEARGVLADEGTPTQIPQRF 475

Query: 446 ---TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
              +  LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S       + 
Sbjct: 476 GGRSEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDLQWKRVS 535

Query: 503 QELLSVKDELDTP-----RRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L  VK           R T   E     D+  E  I RE + V  S +G++       
Sbjct: 536 EQLREVKKAFAKDLDRGARLTTFAEAGEAEDVPLEAMIEREPITVVCSQMGWI------- 588

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
            RA          +  +D D    +F   T   +L   S G  Y      LP G  +  G
Sbjct: 589 -RAMTGHIDLNRELKFKDGDGPRFIFHAETTDKLLVVGSNGRFYTLSAANLPGG--RGMG 645

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +  ++ L     I  ++             ++ A+  G+      +D +   RSGK  
Sbjct: 646 EPVRLMVDLPNEAEIHDLLV------HTPGRKLLVASSAGDGFIVPENDVLAQTRSGKQV 699

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + +    +   V      + + +  +  + + F +  +         GVR      G
Sbjct: 700 LNVKDGVK-TQVCKPVTGDAVAVVGENRKVLVFMLDELPEMG--RGKGVRLQKYKDG 753


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/513 (50%), Positives = 345/513 (67%), Gaps = 27/513 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 204 ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 263

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 264 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 323

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           +TE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 324 FTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 383

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 384 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 443

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 444 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 503

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 504 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 563

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 564 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 615

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 616 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 657

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            IL+    LL +++ EL  ++D     RRT I 
Sbjct: 658 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ 690


>gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 743

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 237/764 (31%), Positives = 392/764 (51%), Gaps = 57/764 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KC
Sbjct: 8   HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE R
Sbjct: 68  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL+ +  D+VDFRP YDG  QEPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           +GE+    + +I +PD  +  LME + GPDFPTG +I+  R  +  AY TGRGS+ IR  
Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMRIRAR 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+      Q+VVTEIPYQV K+ ++E+IA+L+ +K++  + D+RDES      V+  
Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             RG   +V++  L+R T+L+S F++NM  L     P   +L  +L A++  R +V+ RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHDVLQRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR   + +                     
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKA-------------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                    G   T  L+E+Q  +IL +RL  L  L   +IR E  +L  E  +   +L 
Sbjct: 408 ---------GLMATFSLTELQAESILNMRLRSLRRLEELEIRKEHAALTAERGDLTALLD 458

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
           S       I +E+ +++          RR+ +      +++   + + RE + + +S  G
Sbjct: 459 SEPLRWKKITEEVKAIRKAFGAGALGTRRSELAAPPRAIELSAIEAVEREPLTLILSAKG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +VK +        +  G   +    ++ D         +   +  F++ G  +  +   L
Sbjct: 519 WVKTL--------KGHGIDPTTQKFKEGDGFRLAVECQSTDRLCVFATDGRAFTLRAADL 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ +  ++ L+  E +  + P  E          + A+  G     +  D +
Sbjct: 571 PRG--RGDGQPIRLLIELSNDEDLVAVFPVRE------GTRHLLASSAGRGLVIRDEDLV 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+GK  + L    E   +    + + +++  +  + + FP++ +   A    +GV  
Sbjct: 623 AEKRTGKQVLNLKD-AESARICLPVEGDHVVVLGQNRRMLVFPVAQLPEMA--RGLGVAL 679

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               +G  ++   ++   D         ++  +  R  +    +
Sbjct: 680 QKYKEG-GLMDACLLSSTDGAAWPDPARIRPFADFRDYLGKRAD 722


>gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
 gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
          Length = 807

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 265/777 (34%), Positives = 394/777 (50%), Gaps = 69/777 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+       + +    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MND-IVDDPNMNPRNVAE-PLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ L +D+VDFRPNYDG  +EP VL A YPN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTIMAEALLEGLDEDSVDFRPNYDGRLEEPTVLPASYPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+GE++D C+ +I  PD   + L+  + GPDFPTG VI+  R  I  
Sbjct: 179 GIAVGMATNIPPHNIGELIDACLHLIKTPDARDETLLNYVPGPDFPTGGVIVEPRENIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R    +E       Q VVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGSIRLRAKWEVEDLGRGMWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    DV++N L+R + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESAEDVRMVLEPKTKNVDPDVLMNMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR +V+ RR+++ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDFRRDVLCRRSRHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG--------------------------------- 445
              W+      +    DDS Y     G                                 
Sbjct: 416 YEDWSKPHQATISRATDDSDYVSPLLGVDVKALELRPDPEAVARGVLADEGGPGTIPQRF 475

Query: 446 ---TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
              +  LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S       I 
Sbjct: 476 GGRSEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASDELQWKRIS 535

Query: 503 QELLSVKDELDTP-----RRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           ++L  VK           R T   E     ++  E  I RE + V  S +G++       
Sbjct: 536 EQLREVKKSFAKDLDRGARLTSFAEAGEAEEVPLEAMIEREPITVVCSQMGWI------- 588

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
            RA          +  +D D    +F   T   +L F + G  Y      LP G  +  G
Sbjct: 589 -RAMTGHIDLNRELKFKDGDGPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGG--RGMG 645

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + L  ++ L     I  I     D        ++ A+  G+      ++ +   R+GK  
Sbjct: 646 EPLRLMVDLPNEAEILDIFIHQPD------RRLLVASSAGDGFVVPEAEVLAQTRAGKQV 699

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + +    +   V      + + +  +  + + F    +         GVR      G
Sbjct: 700 LNVKDGVK-AKVCKPVSGDAVAVVGENRKVLVFMADELPEMG--RGKGVRLQKYKDG 753



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   ++ +L  S  G G      +     R+GK +         ++   V+       D 
Sbjct: 665 IHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNVKDGVKAKVCKPVS------GDA 718

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + +V +   ++    +E+    R  KGV +      
Sbjct: 719 VAVVGENRKVLVFMADELPEMGRG-KGVRLQKYKDG 753


>gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 808

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 240/746 (32%), Positives = 367/746 (49%), Gaps = 71/746 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + I    + +YL YA++V+ GR +PD+ DG KPV RR+L+ M  MG+    K VK AR+
Sbjct: 56  RIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARV 115

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL  
Sbjct: 116 VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 175

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL ++ + TVDF+PNYDG+F+EP +L AR P +L+NG  GIAVGMAT+IP+HNL E
Sbjct: 176 FADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLRE 235

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHI 256
           V D C  +I  PD     +M ++ GPD+P GA I+     I   Y  GRGS+ +R    +
Sbjct: 236 VADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSL 295

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-------------- 302
           E+ +  + QI VTE+P+ V+   +LE+I EL   K       L  E              
Sbjct: 296 EQLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDS 355

Query: 303 -----SDRQGYRVVIELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
                 ++   R+V E        + ++N L  +TSL+   SVN+V +    +P++  ++
Sbjct: 356 VRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIV 415

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L  +V FR   V RRT++ L +   R H+L G  IA  N+D+V+++IR S  P+    
Sbjct: 416 PALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKR--- 472

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                         T +LSEVQ   ILE+RL +L  L    I  
Sbjct: 473 --------------------------DLIATFHLSEVQAEDILEIRLRQLARLEGIKIEK 506

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIV 534
           EL  L  E +    +L+ R+ +   I +E+ + K +    RRT I               
Sbjct: 507 ELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRRTLIESAEKVTSGAVVPTA 566

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            + + + VS  G++        RA+   G   S +  +  D +       T TS+  F +
Sbjct: 567 DDPVTIIVSRSGWL--------RARSGHGIDISTLTFKAGDDLLASIETRTSTSLAVFDT 618

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      +P G  +  G  L +++ L  G R+T ++              + A+  
Sbjct: 619 NGRCYNVASALIPTG--RGDGVPLTSLIELQGGGRLTHVIVI------DQTANYLIASSG 670

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G       +D +   ++GK    L+   E++        + +      G+ V FP+S ++
Sbjct: 671 GYGYVCAGADLLTRQKAGKAFATLEPG-EVMHPPAKIAGDTVSAVCSGGRLVLFPLSEVK 729

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAI 740
           V       GV+ + L   + ++++AI
Sbjct: 730 VMP--KGKGVKLMELEARETLVAVAI 753



 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 89/282 (31%), Gaps = 25/282 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           I +  L + E I       + +    +L  + A +     +          + G     L
Sbjct: 491 IRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRRTL 550

Query: 679 DSRDEIL---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL--AKGD 733
               E +   +V     +   ++ ++ G               R+  G+   +L    GD
Sbjct: 551 IESAEKVTSGAVVPTADDPVTIIVSRSGW-----------LRARSGHGIDISTLTFKAGD 599

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +++      + +          +  A   + +G  + +          G          
Sbjct: 600 DLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGGGRLTHVIVID 659

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +     I   S  G+G   +  D     ++GK     +  ++    A +A   V+     
Sbjct: 660 QTANYLI--ASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAGDTVS----- 712

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             V   G L+  P++E+++  +  KGV +      E +V+V 
Sbjct: 713 -AVCSGGRLVLFPLSEVKVMPKG-KGVKLMELEARETLVAVA 752


>gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I]
          Length = 771

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 367/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       D        ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I NP +  + L+ ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRGS+  R     E+ +  + Q+VVTE+P   +   +LE+I E+   K      
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 298 DLRDES--------------------DRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
            L  E                     D     V          D  +N L   TS++S  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR +  P  A   LM R                            L+E Q   
Sbjct: 421 VDEVIQTIREAEEPRAA---LMAR--------------------------FGLTERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     D+L +   L  ++ +E+     +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I      + +   +V E + V VS  G++        RA++  G        +  D 
Sbjct: 512 RTLIETAERAVLE-TKVVDEPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP  S +  G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVSGLP--SARGDGQPVTTMIDLEAGTRIVHTIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             D         + AT+ G     +LSD     R+GK  + L+  DE+L  V        
Sbjct: 621 APDSRW------LLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 LALLSAKGKFLVFDLDEVKSLSG-GGRGTILMGLDTADKL 713


>gi|229825734|ref|ZP_04451803.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
 gi|229790297|gb|EEP26411.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
          Length = 745

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 268/766 (34%), Positives = 426/766 (55%), Gaps = 37/766 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I     ++EM+NSY  Y+++VI+ RA+PD+RDGLKPV RRIL+ M ++G+  +K++ 
Sbjct: 4   EENIIIQDFSEEMKNSYRDYSVSVIISRALPDVRDGLKPVQRRILYAMNELGLAPDKQHR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYDAL  MA++WS+ + L++G GNFGS+DGD  AA RYTE
Sbjct: 64  KSARIVGDTMGKYHPHGDSSIYDALVHMAEEWSMSVPLVDGHGNFGSIDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL  L ++ VDF PN+D   +EPV+L A+ P +L+NG  GIAVGMATNIP 
Sbjct: 124 ARLSKGAMNLLTGLDRNLVDFVPNFDEREKEPVILPAKLPFLLINGTTGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN GE++ G +A++DNP++  + LM+ I GPDFPTG +I     I N Y  G G + +RG
Sbjct: 184 HNPGEIIKGAIALLDNPELTTEKLMKYIPGPDFPTGGIIANADEIANIYENGEGRLRVRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPY--QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              IE     ++ IV+TEIP+    NK+ ++E +  L+++K   +IAD+RDES     R+
Sbjct: 244 KYIIEDGEYGKKNIVITEIPFTSTGNKSRLVESLVNLMKDKVFDEIADVRDESSSD-VRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+G + + +LN +++ T L+  +SVNM+A+   +P+ F+L GIL+ F+ F EE+  
Sbjct: 303 VVEVKKGRNVENLLNGIFKKTPLEDTYSVNMLAVRDKQPKIFSLKGILEEFLGFEEELYT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   +LL KA+ RA V+ GL  AV  +D ++ ++R S + + A+  L+  +      K  
Sbjct: 363 KEYTHLLEKAKSRAEVVEGLIKAVDVIDLIIEVLRGSESIKQAKDCLVNGNIAEIKFK-- 420

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                 S  +  +      +E Q  AIL + L+RL GL    +  E  +L   I+E   I
Sbjct: 421 ------SEASKKAAKEFDFTEPQADAILAMPLSRLIGLEVLKLSTEAENLKQNIEEYNKI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS ++ L  +IK +L +     + PRRT ++     +  E+    ED+ V +   GY K 
Sbjct: 475 LSDKTELHRVIKTDLKANVKNFEKPRRTELLNEEKQVYVEEVK-EEDVYVLIDRFGYAKS 533

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V +S                           ++     +  F++ G +++ K   +P   
Sbjct: 534 VDVSSISKANEEALNEYPTK----------IMMKNTDRICIFTASGNMHQVKAKDIPKVR 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            + +G  + NI  + + E I     F E   S     V FAT+ G V+     +F   NR
Sbjct: 584 LRDKGTLVHNISKVGK-EEIILYTSFAELFES----MVFFATRKGFVKLVSGVEFDT-NR 637

Query: 671 SGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           S  +A KL+  DE+LSV         + +  + + TK    + + +  +     ++  GV
Sbjct: 638 SVMLATKLEEGDELLSVRVLSAAEILSHDLRVYMLTKKKIGLSYLLDEVVEM-KKSGRGV 696

Query: 725 RGISLAKGDQV--ISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +GISLA+ D+V  +++ I    + ++D     +     ++R   GD
Sbjct: 697 KGISLAEDDEVKGVAVEISATTEVEFDGDSYKVAKFKLKKRAAKGD 742



 Score = 42.2 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE---IGALVAVFPVNDNDQI 853
           E  +   + KGF K  S  +F  +NR    + AT + + +E   +  L A   ++ + ++
Sbjct: 613 ESMVFFATRKGFVKLVSGVEFD-TNR--SVMLATKLEEGDELLSVRVLSAAEILSHDLRV 669

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV--VSVERIRESEIVDEAES 908
            +++ K   +   ++E+    ++ +GV   S A+D+ V  V+VE    +E+  + +S
Sbjct: 670 YMLTKKKIGLSYLLDEVVEMKKSGRGVKGISLAEDDEVKGVAVEISATTEVEFDGDS 726


>gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia
           R551-3]
 gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 747

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/743 (31%), Positives = 370/743 (49%), Gaps = 61/743 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K
Sbjct: 10  HGFEQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D     AA RYTE
Sbjct: 70  SARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SKLTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL E+V   + ++DNP+  +  L E ++GPD+P+ A +I     ++N Y TG GS+  R
Sbjct: 190 HNLNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYETGNGSVRAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E  +     IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD      V
Sbjct: 250 ATFTKEANN-----IVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRV 304

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R     A+ ++  L+  T ++  + VN+  +    +P+   L  +L  ++ FR   
Sbjct: 305 VLVPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A   L+ R        
Sbjct: 365 VTRRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA---LIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q   ILE +L +L  L    IR E + L  E ++ L
Sbjct: 414 ------------------FGLSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKIL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S+++L  +I+ EL +   +    RR+ +V  +    +++ + +  E M V +S  G
Sbjct: 456 GILDSKTKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVMSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      S +  RD D +       +   V F  S G  Y   V  L
Sbjct: 516 WI--------RAAKGHDIDASTLSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G+ L    S   G    T+       S+      V A+ HG     +  + I
Sbjct: 568 P--SARGNGEPLTGRFSPAAGTSFVTL------ASAEPETRFVLASTHGYGFVTRFENLI 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +   +L+         + I+  T  G  +    + +          +
Sbjct: 620 GRNKAGKAMLNLSAGSTVLTPSVVANVATDRIVAVTSSGNLLAIAANDLPELDKGKGNKI 679

Query: 725 RGISLAK--GDQVISMAIVLHAD 745
             I  AK   ++V+++  +    
Sbjct: 680 IEIPKAKLATERVVAIVAISPGQ 702


>gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
 gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
          Length = 747

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 385/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +   E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 AIWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILESERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9]
 gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9]
          Length = 756

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/757 (32%), Positives = 392/757 (51%), Gaps = 69/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP +L AR P++L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGI 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVGMAT+IP HN  EV +  V ++DNP  DLD LM  ++GPD+PT A I+  T  +K
Sbjct: 174 TGIAVGMATDIPPHNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDLK 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             YATGRGSI +R + H E        IV+T +P+QV+ A +LE+IA  +R K++  + D
Sbjct: 234 KVYATGRGSIRMRAIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVED 288

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R     ++ ++N L+  T L+  F VN+  L    +P    L+
Sbjct: 289 LRDESDHENPTRIVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLL 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  ++ FR   V RR +Y L+K   R H+L GL  A  NLDEV+ IIR   NP   + 
Sbjct: 349 EIITEWLVFRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENP---KA 405

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS +Q  AILE++L +L  L    IR+
Sbjct: 406 ELMSR--------------------------FDLSVIQADAILEIKLRQLAKLEEIKIRS 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E      +L S  RL  +IK+E+ +  ++    RR+ +VE      + + D I
Sbjct: 440 EQDELAKERDYLDKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDLI 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      + +  +  D         ++   +   
Sbjct: 500 PSEAITVVLSEKGWI--------RHAKGYDVDPTSLSYKSGDNYLAHARGKSNLPAILIG 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   LP  S +++G+ +   L+L  G  +  ++   +DE  W     +  + 
Sbjct: 552 SDGRSYALESHSLP--SARSQGEPVTGRLNLTPGTNLRQVL-MADDEQMW-----LMGSD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K +D +  N+SGK  + +  + ++++ +  +    ++IL+ T  G+ + FPI 
Sbjct: 604 AGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEGRMLLFPIK 663

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHAD 745
            +          +  I        ++ +S  IVL   
Sbjct: 664 DLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQG 700



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DN 850
           +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  P++  D 
Sbjct: 591 MADDEQMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVP-----EKAKVMAPQPISNLDT 645

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D+I++++++G ++  P+ ++    +  KG  I + 
Sbjct: 646 DEILVITNEGRMLLFPIKDLPQLGKG-KGNKIINI 679


>gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
 gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
          Length = 751

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/809 (30%), Positives = 401/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I    +   +G+    + +  + +YL Y++ VI+ RA+P + DGLKPV RRI + M
Sbjct: 1   MTDVI----DMSLEGVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLHAGAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L K A  LL ++G  TVD+ PN+DG+ +EP +L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEAKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV + C+ +IDNP  +L  LM  ++GPD+PT A +I     I 
Sbjct: 177 TGIAVGMATDIPPHNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GSI +R V  IE        IV++ +P+QV+   +LE+IA  ++ K++  +AD
Sbjct: 237 KIYETGKGSIKMRAVFTIESGD-----IVISALPHQVSGGKILEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I        + ++  L+  T L+  F VN+  +    KP+   L 
Sbjct: 292 LRDESDHENPTRLVIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLNEKPQVKGLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L+K   R H+L GL IA  N+DEV+ IIR   +P   + 
Sbjct: 352 KILSEWLVFRHSTVRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ R                            LS  Q  A+LEL+L  L  L    IR 
Sbjct: 409 ELISR--------------------------FDLSVKQAEAVLELKLRHLAKLEEMRIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E  +   +LSS  RL  ++K+EL++  ++    RR+ I+E      + +++ +
Sbjct: 443 EQGELNTERHKLEQLLSSDRRLATLVKKELIADAEKFGDERRSPIIERKEAKALTEKELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D   D     ++   +F  
Sbjct: 503 PNEAVTVVLSQQGWA--------RCAKGHDVDAKGLSYKASDGYKDAAEGRSNCPAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ L    +L  G+     +       + ++   + ++ 
Sbjct: 555 SSGRSFALDAHTLP--SARSQGEPLTTRFTLAAGKTFVHALM------ADDSQQYLLSSD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G     K SD I  N++GK  + L +   ++  +  T    +  L+ +  G+ + FP+S
Sbjct: 607 AGYGFIGKFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATDHCLIISNEGRMLIFPLS 666

Query: 712 AIRVFAGRNS---VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           ++ + +       + +    +   ++ + M  ++               + A +R ++  
Sbjct: 667 SLPLLSKGKGNKLMNIPSARVKSREEFVQMLTIVPEGQSV--------TLYAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   K +    G       Q +   E
Sbjct: 719 PADLEHYKGERGRRGFKLPRGLQRVDTLE 747


>gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48]
 gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48]
          Length = 738

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 246/733 (33%), Positives = 388/733 (52%), Gaps = 55/733 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I    +E   I S  + + +   YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSKDVIP---DEGGRILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             M +       K A++ GEVMG +HPHG+ +IYDAL RMAQ ++ R  +++GQGNFG++
Sbjct: 58  HNMRLNPQAAARKSAKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTEC++  AA  LLD + ++ VDFRP YDG  +EPVVL A +PN+L NG  
Sbjct: 118 DGDSAAAMRYTECKMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGAT 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN+ E++D C  +I  P+ D + LM II GPDFPTG + +  R  I  
Sbjct: 178 GIAVGMATSIPPHNVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ +R    +E       +I+V+EIPYQV K+ ++E++A+L+  K+   + D+
Sbjct: 238 AYETGRGSVRVRARYEVEDLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGIL 358
           RDESD +   ++    R    +V++  L++ + L++ F+ NM  L+    P    L  IL
Sbjct: 298 RDESDEEVRLILEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTIL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            +F+  R EV++R++++ L+K   R HVL GL IA  NLDEV+RIIR    P   ++ LM
Sbjct: 358 TSFLDHRREVLIRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETP---KQTLM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ   IL+ RL +L  L    I+ E +
Sbjct: 415 AR--------------------------FELTEVQVDYILDTRLRQLARLEEMAIKGEHD 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIVR 535
            L  E    L +L S  +    I ++L  V+ +L + RRT   E    +E    E  + +
Sbjct: 449 KLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAIESYLPK 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G++        RA +      S +  ++ D +  L        +L  +S 
Sbjct: 509 EALTVILSERGWI--------RATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLLIMTSD 560

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +     +LP G  +  G+ L  +L + +  RI  +  F            +  +K+G
Sbjct: 561 GRFFTLGCDKLPSG--RGHGEPLQLMLEMEENTRIVNVFMFTPGAKR------LMVSKNG 612

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
                   D +   ++GK  +  D  +  +++      + +++  +  + + +P+S +  
Sbjct: 613 YGFVMNEEDAVGNKKAGKSVLNADGTEAFVALPVT--GDHVVILGENNKVLVYPVSELPE 670

Query: 716 FAGRNSVGVRGIS 728
            A    V ++G  
Sbjct: 671 MARGKGVKLQGYK 683


>gi|238063682|ref|ZP_04608391.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
 gi|237885493|gb|EEP74321.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
          Length = 829

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 270/832 (32%), Positives = 398/832 (47%), Gaps = 54/832 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++
Sbjct: 17  DQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYSMHEAGHRPDR 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK AR+ G+VMG+YHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA R
Sbjct: 77  AHVKSARVVGDVMGRYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAAR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  L+ +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 136 YTEARMSHEAMLLVGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV     +I++PD DLD LME + GPD PTG V+LG   ++ AY TGRG + 
Sbjct: 196 MIPHNLAEVVSAARWLINHPDADLDKLMEFVPGPDLPTGGVLLGLDEVRRAYETGRGVVR 255

Query: 250 IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDRQ 306
           +RG   I    G   R+ I V E+PY V    ++  +   V + KR+  IAD++D +DR+
Sbjct: 256 MRGRVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAVTNEVNKTKRLTGIADVKDLTDRE 315

Query: 307 G-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
              R+VIE K G +   +L  LYR T L+  F VN + L   +P+   L  +L+ F+  R
Sbjct: 316 NGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPQTLGLKALLEVFLRHR 375

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +VV RR+ Y   K ++R H++ GL IA+ ++D+VVR+IR S + + A+  LM++     
Sbjct: 376 YDVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVRLIRSSDDAQAAKDGLMRQ----- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS++Q   IL+  L RLT   R ++  E   L  EI 
Sbjct: 431 ---------------------FKLSDIQASYILDTPLRRLTKFDRIELEAEQEQLRKEIA 469

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDM 538
           +   IL     L  ++  EL +V  +  T RRT +V+G L                 +  
Sbjct: 470 QLSTILDDEKVLRKVVSDELAAVVKKFGTERRTTLVDGDLKEVLAASAPAGPLEVADDPC 529

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G V R             +GR        D V  L   +    VL  +S G  
Sbjct: 530 QVILSATGLVARTAAES----EEAAEGRRRSGRVKHDAVRALVHSTARGRVLLVTSAGRA 585

Query: 599 YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +K  V  LP+   QA       G +   ++ L  GE +  + P     ++  +  +   T
Sbjct: 586 FKIDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLGP--TAEGSPGLALGT 643

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
           + G V+         +       + L   DE++           +   +     +RFP S
Sbjct: 644 RQGVVKVCAPDW--PVRSDEFEVVGLREGDEVVGATWLADGSETLAFVSSEASLLRFPAS 701

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    +   G+ GI+L  G +V+    V   D  + E +      +  +         
Sbjct: 702 LVRPQGPKGG-GMAGINLPAGARVVFFGAVREDDPSHGEPMVVTSTGATVKVTPFEAYPA 760

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                     +  +  E    +       +  +  G        D R     
Sbjct: 761 KGRATGGVRAQRFLKGETDLVVAWIGPRPVGATATGDPVELPPADPRRDGSG 812



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 34/274 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQ---INRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R             RSG++       D + ++   T    +LL T
Sbjct: 526 DDPCQVILSATGLVARTAAESEEAAEGRRRSGRVK-----HDAVRALVHSTARGRVLLVT 580

Query: 701 KLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADYDERI 752
             G+  +  +  + V   +        G+     + L  G+ V+ +A +           
Sbjct: 581 SAGRAFKIDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLGPTAEGSPGLA 640

Query: 753 CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +       A    +  D  E+  L+    V G         L    + +  VS +  
Sbjct: 641 LGTRQGVVKVCAPDWPVRSDEFEVVGLREGDEVVG------ATWLADGSETLAFVSSEAS 694

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKG-TLI 863
             R  +   R     G G+   ++        +V    V ++D    + ++V+  G T+ 
Sbjct: 695 LLRFPASLVRPQGPKGGGMAGINLPAGAR---VVFFGAVREDDPSHGEPMVVTSTGATVK 751

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             P        RAT GV      K E  + V  I
Sbjct: 752 VTPFEAYPAKGRATGGVRAQRFLKGETDLVVAWI 785


>gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822]
 gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis]
          Length = 771

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 254/760 (33%), Positives = 367/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       D        ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I NP +  + L+ ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRGS+  R     E+ +  + Q+VVTE+P   +   +LE+I E+   K      
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 298 DLRDES--------------------DRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
            L  E                     D     V          D  +N L   TS++S  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR +  P  A   LM R                            L+E Q   
Sbjct: 421 VDEVIQTIREAEEPRAA---LMAR--------------------------FGLTERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     D+L +   L  ++ +E+     +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I      + +   +V E + V VS  G++        RA++  G        +  D 
Sbjct: 512 RTLIETAERAVLE-TKVVDEPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP  S +  G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVSGLP--SARGDGQPVTTMIDLEAGTRIVHTIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             D         + AT+ G     +LSD     R+GK  + L+  DE+L  V        
Sbjct: 621 ASDSRW------LLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSG-GGRGTILMGLDTADKL 713


>gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 743

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 238/764 (31%), Positives = 394/764 (51%), Gaps = 57/764 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KC
Sbjct: 8   HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE R
Sbjct: 68  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL+ +  D+VDFRP YDG  QEPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           +GE+    + +I +PD  +  LME + GPDFPTG +I+  RT +  AY TGRGS+ IR  
Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMRIRAR 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+      Q+VVTEIPYQV K+ ++E+IA+L+ +K++  + D+RDES      V+  
Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             RG   +V++  L+R T+L+S F++NM  L     P   +L  +L+A++  R +V+ RR
Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHDVLQRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR   + +                     
Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKA-------------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                    G   T  L+E+Q  +IL +RL  L  L   +IR E  +L  E  +   +L 
Sbjct: 408 ---------GLMATFSLTELQAESILNMRLRSLRRLEELEIRKEHAALTAERGDLTALLG 458

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
           S       I +E+ +++          RR+ +      +++   + + RE + + +S  G
Sbjct: 459 SEPLRWKKITEEVKAIRKAFGAGALGTRRSELAAPPRAIELSAIEAVEREPLTLILSAKG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +VK +        +  G   +    ++ D         +   +  F++ G  +  +   L
Sbjct: 519 WVKTL--------KGHGIDPTAQKFKEGDGFRLAVECQSTDRLCVFATDGRAFTLRAADL 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ +  ++ L+  E +  + P  E          + A+  G     +  D +
Sbjct: 571 PRG--RGDGQPIRLLIELSNDEDLVAVFPVRE------GTRHLLASSAGRGLVIRDEDLV 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+GK  + L    E   +    + + +++  +  + + FP++ +   A    +GV  
Sbjct: 623 AEKRTGKQVLNLKD-AESARICLPVEGDHVVVLGQNRRMLVFPVAQLPEMA--RGLGVAL 679

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               +G  ++   ++   D         ++  +  R  +    +
Sbjct: 680 QKYKEG-GLMDACLLSSTDGAAWPDPARIRPFADFRDYLGKRAD 722


>gi|15828844|ref|NP_326204.1| DNA topoisomerase IV subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089787|emb|CAC13546.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma pulmonis]
          Length = 939

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 243/824 (29%), Positives = 409/824 (49%), Gaps = 38/824 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      E+  + + S S+   M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MNKKNSLEQEQINEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           M + +  +K + K ARI G+V+GKYHPHG+++IY+A+ RMAQDW + + LI+  GN GS+
Sbjct: 61  MDLKLWNDKPFKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + ++ +L+ + K+ V F PN+D S +EP VL A  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGAR 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNLGE++D  +A I    + ++ L++ I+GPDFPTG VI G +GI  A
Sbjct: 181 GIAAGFATEMPPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVIHGLSGIVQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  GRG I +           D+ +I++T+IPY   K+ ++  I E++  ++I  I ++ 
Sbjct: 241 FKEGRGRISLTCKYEHINL-PDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVL 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D+SDR G  + I+L++ A+ + I+  L+  T LQ  ++ N +A+    P    L  +L  
Sbjct: 300 DQSDRDGISIAIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSPTLLNLNELLDI 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   + + V+  ++ LNKAR R  V+ G        D+++  IR S + +         
Sbjct: 360 YIEHLKTINVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKK-------- 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                 I+DLI +                S+ Q  AI ELRL RL+       +NE   L
Sbjct: 412 ----GVIEDLIRI-------------FAFSQRQATAIAELRLYRLSQTDFYLYQNEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDM 538
             +I +   IL+S + L   +   L  +K    TPR+T+I++  L  + + E+ +V E  
Sbjct: 455 IKQINDFEKILNSDNELKTYLVNILKKIKKTYPTPRKTQIIDEELKRNYDIEELVVDEKC 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V++S  GY+KRV    ++         +   +++ D ++ L   +T   +L FS  G  
Sbjct: 515 YVSLSQDGYLKRVSSKTFKTN-----DFASFGLKENDNLSFLSKATTKDKLLIFSDHGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               ++++     ++ G  + + +  N  E+I  ++   E      + Y+   T+ G  +
Sbjct: 570 AIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNE---FSQDYYISLVTQKGLGK 626

Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R  L+ F+   +S    A+ L   D ++ V     + +I+L T     V+F   A+ V +
Sbjct: 627 RVSLNKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDALPVIS 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                G + I L++G++V +M+I    D                               +
Sbjct: 687 T-KGQGNKMIQLSEGEKVSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRAAKGKRIS 745

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           +    G           L  + IL  +E      +   +F+I+ 
Sbjct: 746 EELKLGYQKIVLAYNQNLHHKLILVKNELEKIDPSKIVNFKITK 789



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 29/289 (10%)

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +    + E I  I  F +  +S N L          +++     +    ++  I  +L  
Sbjct: 446 LYQNEKEELIKQINDFEKILNSDNELKTYLVNILKKIKKT----YPTPRKTQIIDEELKR 501

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA- 739
             +I   E    E   +  ++ G   R      +              L + D +  ++ 
Sbjct: 502 NYDIE--ELVVDEKCYVSLSQDGYLKRVSSKTFKTNDF------ASFGLKENDNLSFLSK 553

Query: 740 -------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  ++     +Y     Y       +       + +     +  +   +  E  Q 
Sbjct: 554 ATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFSQ- 612

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               + +I  V++KG GKR S   F I+ R  K   A  +   +    LV V        
Sbjct: 613 ----DYYISLVTQKGLGKRVSLNKFLIT-RQSKISNAITLKDDDR---LVDVRVSKGKQN 664

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IIL ++   +++   + + + S   +G  +   ++ E+V ++   + ++
Sbjct: 665 IILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEKVSAMSITKTTD 713



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 92/246 (37%), Gaps = 9/246 (3%)

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           +E   +    V  ++ G ++R           +   +  L   D +  +   T ++ +L+
Sbjct: 506 EELVVDEKCYVSLSQDGYLKRVSSK---TFKTNDFASFGLKENDNLSFLSKATTKDKLLI 562

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G     PI  I       S GV        +    +  VL  +    +    +   
Sbjct: 563 FSDHGNYAIIPIYKIEEQKS-KSFGVHINDFVYFNSYEKIIYVLVVNEFSQDYYISLVTQ 621

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE--QFILTVSEKGFGKRTSSYD 816
               + +S +   IT     S+      ++R  ++++ +  Q I+  +      + S   
Sbjct: 622 KGLGKRVSLNKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDA 681

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
             + +  G+G +   +S+  +   + A+      D +IL+++K  LI+VP +  +   RA
Sbjct: 682 LPVISTKGQGNKMIQLSEGEK---VSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRA 738

Query: 877 TKGVVI 882
            KG  I
Sbjct: 739 AKGKRI 744


>gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506]
 gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506]
          Length = 744

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 260/743 (34%), Positives = 383/743 (51%), Gaps = 62/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  I +D   +  I  + +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGEPPIPTD---DGTIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHGN AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGGGFRKSAKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AAERYTE RL + A  +LD + +D VDFRPNYDG+ +EPVV+   +PN+L NG  
Sbjct: 118 DGDNAAAERYTEARLTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGST 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E++D  + +IDNP    D L++ ++GPDFPTG  VI     I +
Sbjct: 178 GIAVGMATSIPPHNAAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIAD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R   H E+T      +VVTEIPY V K+ ++EKIA+L+ EK++  +AD+
Sbjct: 238 AYATGRGGFRLRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R   A++++  L+R T L++ F +NM  L G + P+  +L   L
Sbjct: 298 RDESAEDVRLVLEPRARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEAL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R EV++RR+++ L +   R  VL G  IA  NLDEV+RIIR    P+       
Sbjct: 358 REWVDHRREVLLRRSRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPK------- 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                 +    T  L++VQ  AIL +RL  L  L   +IR E +
Sbjct: 411 ----------------------VELMRTFELTDVQAEAILNMRLRSLRKLEEFEIRKEHD 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMEDEDCI 533
           +L  E      +L S +R    +  EL   +           RRT   E      D    
Sbjct: 449 ALSKEKDGIEKLLGSEARQWKTVAWELGETRKIFGPDTPLGRRRTGFGEAAAHDADAVSE 508

Query: 534 V---REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
               RE + V VS  G++        RA +      S +  + +D +   F   T   +L
Sbjct: 509 ALVEREPITVVVSEKGWI--------RALKGHVADLSALAFKGDDELRISFFTETTAKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     +LP G  +  G+ L   + L Q   I  ++P+           ++ 
Sbjct: 561 VFATNGRFYTLDASKLPGG--RGHGEPLRLSIELEQEADIVDVLPY------QGGRKLLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A K G        + +   R GK  + +D +D +  +      + + +  +  + + FP+
Sbjct: 613 AAKEGRGFLVAEDECVANTRKGKQVLGVDGQDAVKVIPAI--GDSVAVIGENRKLLVFPL 670

Query: 711 SAIRVFAGRNSVGVRGISLAKGD 733
           S I         GVR      G 
Sbjct: 671 SQIPEMT--RGRGVRLQRYKDGQ 691


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 247/735 (33%), Positives = 387/735 (52%), Gaps = 61/735 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  + ++    + KC
Sbjct: 6   GIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAGFKKC 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+AL R+AQD++ R  LI+GQGNFG++DGD  AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LLD L +D VDFR  YDG  +EP+VL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 126 LTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
             E+ +    +I NP+ D  AL++ I+GPDFPTG +++    G+   Y TGRGS  +R  
Sbjct: 186 AFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFRVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE     +  +VVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES      V++ 
Sbjct: 246 WAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRIVLVP 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRR 372
             R   A +++  L++ T L+S F +NM  L +G  P    +  +L+ ++  R+ V++RR
Sbjct: 306 RSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAVLIRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L++   R  VL G  +A  NLDEV+RIIR    P   + ELM+             
Sbjct: 366 SQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEP---KAELMR------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L++VQ  AIL +RL  L  L   +IR E + L  E  E   +L 
Sbjct: 410 -------------TFGLTDVQAEAILNMRLRSLRKLEEMEIRKEHDKLSAERDELKALLG 456

Query: 493 SRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL-DMED--EDCIVREDMVVTVSH 544
           S +R    I +++  V            RRT   E    D+ED  +  I +E + V +S 
Sbjct: 457 SEARQWTRIGKDIAEVGKAYGPETPLGRRRTGFSEAPGHDVEDLQQAMIEKEPITVVISD 516

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +   +  S +  +  D +   F   T   +L FS+ G  +     
Sbjct: 517 KGWI--------RALKGHQQDLSSLAFKQGDKLKLAFHAETTDKILVFSTGGKFFTLGAD 568

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           RLP G  +  G+ +  ++ + +G+ + +               ++ A+          +D
Sbjct: 569 RLPGG--RGHGEPIRLMVDMEEGQDVVSAFVHK------PGRKLLVASDEARGFVVPETD 620

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            +   R GK  + L + +E + +    + + + +  +  + + FP++ +         GV
Sbjct: 621 VVANTRKGKQVLNLTAPNEAV-LCIAAEGDHVAVIGQNRKLLVFPLAQVPEMG--RGRGV 677

Query: 725 RGISLAKG---DQVI 736
           R      G   D V+
Sbjct: 678 RLQRYRDGHLADAVV 692


>gi|291459210|ref|ZP_06598600.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418464|gb|EFE92183.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 747

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/765 (32%), Positives = 413/765 (53%), Gaps = 28/765 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SYL Y+++VI  RA+PD+RDGLKPV RR+L+ M ++ V  ++  +K
Sbjct: 3   EKILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLYDMNELHVHSDRPTLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+A+IY+ L  +AQD+     L++GQGNFGS++GD  AA RYTE 
Sbjct: 63  SARICGDTMGKYHPHGDASIYETLVVLAQDFKRMQPLVQGQGNFGSIEGDSAAAPRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RLQ+    ++    + TV F+PNYD   +EP VL AR P  L+NG  GIAVGM T+ P+H
Sbjct: 123 RLQRFTDEVMLRDLETTVPFQPNYDEKLREPEVLPARIPYFLLNGSEGIAVGMTTSAPSH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++D  +A + NP ++   ++  + GPDFPTG +I  R+ + + Y TG G + +RG 
Sbjct: 183 NLSEIIDLVLAYLKNPAMETREMLHYLPGPDFPTGGIIANRSELLDIYRTGSGKLKLRGK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQVNKA---AMLEKIAELVREKRIVDIADLRDESDRQGY 308
              EK  G  D+++++VTEIPY +        ++  A LV EK++ +I D+ ++SD+ G 
Sbjct: 243 LVFEKRKGRSDKDKLIVTEIPYTMIGQGIMKFMQDTAALVEEKKLPEITDISNQSDKDGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK GA  D I N LY+ T L+  F VNM+A+   +PE  +L GIL+ +++F+ ++
Sbjct: 303 RIVLELKSGADIDRITNILYKKTKLEDSFGVNMLAIVKGRPEVLSLRGILREYLSFQYQL 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + ++ + LL K   R  +  GL  AV  +D ++ ++R S   E A++ LM       +  
Sbjct: 363 IEQKYQKLLEKELLRKEIQEGLIRAVDCIDAIIALLRSSQKQEEAKKALM------GEGS 416

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           + I L +            + +E Q +AIL+++L++L GL    ++ E       IKE  
Sbjct: 417 EGIRLRERDREYREQIRDFHFTERQAQAILDMKLSKLIGLELLALQREYRESLKSIKEYR 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            ILSSR R   ++ QEL  +++    PRRT + +G   + DE  +    +V      GYV
Sbjct: 477 GILSSRERANELLAQELSEIRERYFVPRRTLLEDGKDAVYDESAVEEMQVVYVQDRFGYV 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  +VY+  +      S            L        +L F+  G +++ ++  +P+
Sbjct: 537 KLLDETVYQRNQEALLSES----------RFLIPCKNTDRILLFTDQGRLHQIRLLDVPL 586

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + NI   +  E     + F   ++  +   ++F ++ G  +R    +F   
Sbjct: 587 GKFRDKGVPIDNISKYSASEEE---ILFAAAKAELSGKELLFVSQMGLAKRVPSEEFDTA 643

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           NR    A KL   D + SV +     E D++L ++    +RFPI  +     +N+ GV  
Sbjct: 644 NRL-VSATKLQEGDRVASVLSVPGESEEDLVLQSEASYFLRFPIKEL-PLQKKNAKGVLS 701

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           + L +GD++ S  ++             +     ++    G   +
Sbjct: 702 MKLGRGDRIRSALLIAPGSERLSTEKGELMLSRLKQSHRGGRGAK 746



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             + +L  + +L VS+ G  KR  S +F  +NR    + AT + + + + ++++V P   
Sbjct: 613 AAKAELSGKELLFVSQMGLAKRVPSEEFDTANR---LVSATKLQEGDRVASVLSV-PGES 668

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            + ++L S+    +R P+ E+ +  +  KGV+     + +R+ S   I 
Sbjct: 669 EEDLVLQSEASYFLRFPIKELPLQKKNAKGVLSMKLGRGDRIRSALLIA 717



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V    A  + ++ Y++      +L+     +        + E  +SE R         
Sbjct: 513 DAVYDESAVEEMQVVYVQDRFGYVKLLDETVYQ-------RNQEALLSESRFLIPCKNTD 565

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK---INEIGALVAVFPVNDNDQIIL 855
            IL  +++G   +    D  +     KG+   ++SK     E     A        +++ 
Sbjct: 566 RILLFTDQGRLHQIRLLDVPLGKFRDKGVPIDNISKYSASEEEILFAAAKAELSGKELLF 625

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           VS  G   RVP  E   A+R    V      + +RV SV  +      D
Sbjct: 626 VSQMGLAKRVPSEEFDTANRL---VSATKLQEGDRVASVLSVPGESEED 671


>gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
 gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
          Length = 771

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 253/760 (33%), Positives = 367/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       D        ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I NP +  + L+ ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRGS+  R     E+ +  + Q+VVTE+P   +   +LE+I E+   K      
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 298 DLRDES--------------------DRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
            L  E                     D     V          D  +N L   TS++S  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR +  P  A   LM R                            L+E Q   
Sbjct: 421 VDEVIQTIREAEEPRAA---LMAR--------------------------FGLTERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     D+L +   L  ++ +E+     +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I      + +   +V E + V VS  G++        RA++  G        +  D 
Sbjct: 512 RTLIETAERAVLE-TKVVDEPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP  S +  G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVSGLP--SARGDGQPVTTMIDLEAGTRIVHTIA- 619

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
                +      + AT+ G     +LSD     R+GK  + L+  DE+L  V        
Sbjct: 620 -----AAPGSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEQGDELLRPVPLFEGATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSG-GGRGTILMGLDTADKL 713


>gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 743

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 247/778 (31%), Positives = 384/778 (49%), Gaps = 63/778 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +     E   I    +++ +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSKGPVP----EPLEIRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+AA+Y+A+ R+AQ++++R  L+EGQGNFG++
Sbjct: 57  RMLKLDPGSGFKKCARVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  L++ L  D VDFRP YDG   EPVV+ A +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARLTAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMATNIP HN+GE+ +  + +I  P    +AL+  ++GPDFPTG V+      I  
Sbjct: 177 GIAVGMATNIPPHNVGELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG++ +R     E  S    QIV+TEIPYQ+ KA ++E+IAEL+  +++  +AD+
Sbjct: 237 AYRTGRGAMRLRARWEKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGIL 358
           RDES      V+    R   A+ ++ QL+R T L+  F++NM  L+G   P+   L   L
Sbjct: 297 RDESADDLRLVLEPRNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEAL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF+  R  V+ RR+++ L K   R  VL G  IA  NLDEV+RIIR    P+ A     
Sbjct: 357 VAFLDHRLVVLGRRSRHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPA----- 411

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LS+VQT AIL +RL  L  L   +IR E +
Sbjct: 412 ------------------------LMAAFGLSDVQTEAILNMRLRSLRRLEEMEIRREHD 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDED 531
           +L  E      +L+       +I +++   +           RRT +      + +  E 
Sbjct: 448 ALSAEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRRTELGSAPTAVIVPIEA 507

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            + RE + V +S  G++        RA +   +       ++ D +       T   +L 
Sbjct: 508 LVEREPITVLLSERGWL--------RAVKGHQEPGEENKFKEGDALLLALHAQTTDKLLI 559

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  +     +L     +  G+ +  +L L     I +++             ++ A
Sbjct: 560 LDSTGRFFTLPADKL--ARGRGFGEPVRLMLDLPNDADIVSLLV------HDPARRLILA 611

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
              G     +  D +   R+GK  M +D+ +  L        + + +  +  + + FP++
Sbjct: 612 ASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREVRG-DHVAVIGQNRKLLVFPLT 670

Query: 712 AIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            + V A     GV       G    + + AI         ER      ++A     +G
Sbjct: 671 QVPVLA--RGKGVILQRYKDGGIADIKTFAIADGLTWKSGERTRTESDLTAWLGDRAG 726


>gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 747

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/740 (32%), Positives = 367/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I  +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTETIRPA----FHGFEQIPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +LG+ TVD+ PN+DG+ +EP  + AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL E+V  CV ++D+PD  +  L E +RGPD+PT A +I   + ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  G GS+  R     E  +      VVT +PYQV+ + ++E+IA  +R K++  + D
Sbjct: 237 AMYENGTGSVRARATWQKENGN-----FVVTALPYQVSPSKVIEQIAAQMRTKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    KP    L 
Sbjct: 292 IRDESDHANPVRVVLVPRSNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDGKPAVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + VVRR K+   K   R H+L GL +A  NLDEV+RIIR    P  A  
Sbjct: 352 TLLDEWLTFRTDTVVRRLKHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            L+  Q   ILE RL +L  L    IR 
Sbjct: 410 -LIAR--------------------------FGLTGEQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E++  +  L S++RL  ++K ELL+   +    RR+ +V  E    +++ + +
Sbjct: 443 EQDELARELERIVATLDSKARLKKLVKDELLADAKKFGDARRSPLVLREAAHAIDETELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      +G+  R+ D +       +   V F  
Sbjct: 503 PSEPVTVVLSQKGWV--------RAAKGHDVDAAGLSYREGDALLGAVRARSTWQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G+ L    S   G     +       S  N+   V A+ 
Sbjct: 555 SHGRSYSTPAHSLP--SARGNGEPLTGRFSPASGASFLAL------ASGENDTRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L        + + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKALINLATGANVLQPAVVGNPETDRIVAVTSAGHLLAIPAA 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 ELPELDKGKGNKLIDIPRAK 686


>gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846]
          Length = 747

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 384/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPISL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|261337210|ref|ZP_05965094.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
 gi|270277558|gb|EFA23412.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 285/961 (29%), Positives = 432/961 (44%), Gaps = 144/961 (14%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  N+ Y+
Sbjct: 18  KEHIVETPLNEEMSTSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMHLLPNRPYM 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA RYTE
Sbjct: 78  KSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYTE 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  AA  +  ++ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMATN+ T
Sbjct: 137 ARLAPAALGMNANIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMATNMAT 196

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV     V+ +PD  LD LME + GPD+P G +I+GR GI++AY  GRG++  R 
Sbjct: 197 HNLGEVVAAAKYVMKHPDASLDTLMEYVPGPDWPGGGIIIGRDGIRDAYRDGRGTVTTRA 256

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
            +H+E  +  ++ IVVTE+PY V    +LE+I+E V+  ++  I+   D +DR    R+V
Sbjct: 257 TTHMENVTARKKAIVVTELPYMVGPERVLERISEGVKNHKLEGISGAIDLTDRHNGTRIV 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K G   D +L QL ++T LQ  F++N VAL   +P    L  +L  ++  R  V+ R
Sbjct: 317 IEIKTGYDPDAVLVQLLKHTPLQENFTINNVALVDGRPHTLGLRAMLDVWIDHRRNVIRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y   KA +R H++ GL +A+ ++DEV+ +IR S + +TA+  LMQ            
Sbjct: 377 RSEYRRAKALERLHLVDGLLMALIDIDEVIEVIRTSQDADTAKSRLMQ------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q + IL+LRL RLT + R ++  E + L   I E   IL
Sbjct: 425 --------------VFDLDDIQAQYILDLRLRRLTKMSRIELETERDDLRRSIAELEGIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-------------------- 531
           +S   L  ++ +E+       +TPRRT +++   D                         
Sbjct: 471 ASAQALDEVVVREMDEAVAAYNTPRRTVLLDTADDGTLHPVSAHGDDTLSASALSAARKA 530

Query: 532 ----------------------------CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
                                        I  E  V+ +S  G + RVP+         G
Sbjct: 531 QTLQATAQEVHEASKAKGNDAANMVQALQIEDEPCVIALSASGLIARVPVQALSV--LEG 588

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGK------ 616
           +          D V   F  +T +     +S G +       LP +      G       
Sbjct: 589 RRSDMPRT-AHDMVRCAFATTTRSDYALITSAGRLVLAHAVELPSLALATVDGVTNVDLT 647

Query: 617 ---------ALINILSLNQGERITTIMPF-----------PEDESSWNNLYVVFATKHGN 656
                              GER+   +P              D  +  +     AT    
Sbjct: 648 GGIHAEELIGATQHTDPIDGERVIAAVPMGNANTTARSVNTNDTDNAADSGDTSATADAP 707

Query: 657 VRRNKLSDFIQINRSGKI---------------AMKLDSRDEILSVETCTQENDILLTTK 701
               +L+      R G +                + L   DE+L+       + ++  + 
Sbjct: 708 TTPAQLAPLALGTRRGLVKRWNREAPTTMDSWSVIDLKDGDEVLAARDAPDGSRLVFVSS 767

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
               + F    +R   GRNS G+ GI LA+G + I+ ++V   +  +             
Sbjct: 768 DSSLLTFDAKHVRP-QGRNSGGMAGIRLAEGCEAIAFSVVEPQELPWIPEEP-------- 818

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                   E+ TS   D       +          +   L  +E G  K T    +    
Sbjct: 819 -------VEDGTSQPADGIDTVFHATGAVVLTVAGDADALAGTENGSAKITPLSLYPTKG 871

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+  G+R+    K    G    VF       ++  +  G  + +P        R   G  
Sbjct: 872 RATGGVRSQRFLK----GQNTLVFAYVGQYPLLAATASGAPVTLPE---PNLKRDGSGTA 924

Query: 882 I 882
           +
Sbjct: 925 L 925


>gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 747

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 365/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL ++ + T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  +  N+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 QLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL++   +    RR+ +V  +    +++ + +
Sbjct: 443 EQEALAKERAQIMAILESKTKLKKLIKDELIADAKKFGDARRSPLVQRDAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SEGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P S
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAS 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
 gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
          Length = 757

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 241/796 (30%), Positives = 399/796 (50%), Gaps = 70/796 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN  E+V  CV ++DNP  DL+ LME + GPD+PT A +I  R  I   Y+TG+GSI  R
Sbjct: 190 HNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADIAKIYSTGKGSIKAR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY--R 309
            V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +     
Sbjct: 250 AVYAVESG-----EIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVRI 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           +V+        D ++  L+  T LQ  F VN+  +    KP+   L  IL  ++ FR   
Sbjct: 305 IVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNGKPQVKGLKQILTEWLEFRLTT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR  + L+K   R H+L  L +A  N+DEV+ IIR+  NP   + ELM R        
Sbjct: 365 VTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENP---KTELMSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +SE+Q  AIL+L+L  L  L    I +E + L +E  +  
Sbjct: 414 ------------------FQISEIQADAILDLKLRHLAKLEEVKITSEQDELEVERDKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS  RL  +IK+EL+   +     RR+ +VE      + +++    E + V +S  G
Sbjct: 456 LLLSSDRRLKTLIKKELIHDGETYGDDRRSPLVERSESKALTEQELAPVEAVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D      +  ++   +F  S G  +      L
Sbjct: 516 WV--------RCAKGHDIDGHALSYKSGDGFLCSAVGRSNQPAVFIGSTGRSFATDTHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ +    +L+ GE +  ++   +DE      + + A+  G        D +
Sbjct: 568 P--SARSQGEPITTRFNLSPGEVMEHLL-LGDDEK-----FYLLASDAGYGFVGSYKDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  +++  +   +     IL  T  G+ + F + ++   +      +
Sbjct: 620 SRNKAGKALLSLPANAKVIKPQLVDKSKVESILAITNEGRMLLFSMESLPQLSKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GI        ++++    V+  D            + A +R ++    ++   + +   
Sbjct: 680 IGIPTERAKNREELLIHLHVVPEDISV--------TLWAGKRKLTLKPSDLEHYRGERGR 731

Query: 782 EGNISEERCQELKLKE 797
            G       Q +   E
Sbjct: 732 RGAKLPRGLQRVDSVE 747


>gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 748

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 388/749 (51%), Gaps = 62/749 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+
Sbjct: 182 ATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD 
Sbjct: 242 GSIKMRAVWKKEDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++
Sbjct: 297 ENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R  
Sbjct: 357 VFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q  AIL LRL  L  L   +++ E + L  
Sbjct: 412 ------------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V
Sbjct: 448 ERDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y 
Sbjct: 508 ILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAG 718
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 719 RNSVGVRGIS---LAKGDQVISMAIVLHA 744
                +  IS     +G+++++  +++  
Sbjct: 672 GKGNKIINISAQAAKEGNELLARLLLVKP 700


>gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 749

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/754 (30%), Positives = 389/754 (51%), Gaps = 57/754 (7%)

Query: 1   MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++ +++   +       + S+ +  +N+YL YA+ VI+ RA+P + DGLKPV RRI++ 
Sbjct: 1   MSDTLVAKTTKANDLNNPTRSVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++   K  K AR  G+V+GKYHPHG++A Y+A+  M+Q +S R  LI GQGNFGS
Sbjct: 61  MSELGLKNTAKPKKSARTIGDVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGS 120

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D     AA RYTE +L   A+ LL++LG+ TVD++ N+DG+ QEPV L AR PN+L+NG
Sbjct: 121 PDDPKSFAAMRYTEAKLSAYANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMAT+IP HNL EVV GC+A++  P +    L + I  PD PT A +I     +
Sbjct: 181 TTGIAVGMATDIPPHNLSEVVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPEDL 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS  +R   H+     ++  +++  +PYQ++   ++E+IA L+  K++  + 
Sbjct: 241 LQLYKTGRGSYKMRATYHV--DDKEKNLVIIDALPYQISGNKIIEQIANLINAKKLPWVT 298

Query: 298 DLRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+ DESD Q    ++          + +++ L+  T L+S + VN+  +    KP+  +L
Sbjct: 299 DIHDESDHQNACRIVLELRSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNGKPQVKSL 358

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  +++ R + V RR +Y L+K   R H+L GL IA  ++DEV+RIIR   +P   +
Sbjct: 359 LTILTEWLSVRRDTVTRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDP---K 415

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L+E Q  AIL++RL +L  L   +++
Sbjct: 416 AELMTR--------------------------YDLTESQANAILDIRLRQLARLEEIELK 449

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDC 532
            E + L  E  +    L++  +L G++ +EL +   E    R++ IVE      +++ D 
Sbjct: 450 REQSDLEAEKAQIEGYLNNPDKLTGLMIEELTADMKEHGDKRQSPIVERTEATALKETDL 509

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V VS  G++        R+ +      + +  R  D         ++  V   
Sbjct: 510 APSEPVTVIVSKSGWI--------RSAKGHDVDAANMNYRSGDAYLAHAQGKSNEKVYLM 561

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y+     LP  S + +G+ L ++L    G     ++   +D        ++ A+
Sbjct: 562 DNTGRSYRLDAHTLP--SARGQGEPLTSLLKPTGGASFVNVLMGQDDSK------LIMAS 613

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G    N  +D     ++GK  +  D    +++ +   Q+  + + +  G  + +P++ 
Sbjct: 614 SQGYGFINTFADLDTNQKAGKNVINFDDAFSLITHQIGEQDTLVGVVSSAGHLLVYPLTE 673

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           + +   +   G + I L  GD V+++      D+
Sbjct: 674 LPMM--KKGKGNKLIDLKDGDSVVAITTFSEGDS 705



 Score = 41.4 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 67/178 (37%), Gaps = 14/178 (7%)

Query: 727 ISLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++   GD  ++ A     +  Y  D      +  +       G  E +TSL   +     
Sbjct: 538 MNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRLDAHTLPSARGQGEPLTSLLKPTGGASF 597

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++      +   +  ++  S +G+G   +  D   + ++GK +   D          +  
Sbjct: 598 VN----VLMGQDDSKLIMASSQGYGFINTFADLDTNQKAGKNVINFD------DAFSLIT 647

Query: 845 FPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             + + D ++ +VS  G L+  P+ E+ +  +  KG  +      + VV++    E +
Sbjct: 648 HQIGEQDTLVGVVSSAGHLLVYPLTELPMMKKG-KGNKLIDLKDGDSVVAITTFSEGD 704


>gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC]
 gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601]
 gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC]
 gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601]
          Length = 780

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 245/775 (31%), Positives = 380/775 (49%), Gaps = 83/775 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +      + G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPVLDFSGADAG-DALGLGGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNK----KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
            +MG+ ++     K VK AR+ G+V+G++HPHG+ + YDAL R+AQD+S R  LI+GQGN
Sbjct: 60  DRMGLSYSGNAPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGN 119

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL K A  LL ++ + TVDF PNYDGS QEP  L AR P  L+
Sbjct: 120 FGSRDGDGAAAMRYTEARLTKIAGLLLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALL 179

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-T 235
           NG  GIAVG+AT IP+HNL EV D CVA++ NP +  + L  ++ GPD+P G  I+    
Sbjct: 180 NGASGIAVGLATEIPSHNLREVADACVALVKNPRLSDEELFALVPGPDYPGGGQIISSVA 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I++AY  GRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I ++   K    
Sbjct: 240 DIQDAYRGGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAG 299

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQS 335
              L  E                   S     R+V E K G      ++  L  +TSL++
Sbjct: 300 KKALTQEQQQLKASMLAVLDGVRDESSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLET 359

Query: 336 LFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
              +N+  +    +P + +L  +L  +V FR++ + RR+++ L K  DR H+L G  + +
Sbjct: 360 SAPINLTMVGLDGRPVQKSLRQMLAEWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVL 419

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+ IIR + +P+ A   LM R                            LSE Q 
Sbjct: 420 LNIDEVIAIIRAADDPKAA---LMAR--------------------------FSLSERQA 450

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L    I  EL+ L  E  +  DIL++ + L  ++ +E+ +   +   
Sbjct: 451 EDILEIRLRQLARLEAIKIEQELSELRKEQGQLEDILANPASLRRLMVREIEADAKQFAD 510

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT I +    +  E  +V E   V VS  G+V        R ++  G        +  
Sbjct: 511 ARRTLI-QEEKKVVAEVKVVDEPTTVVVSQKGWV--------RTRQGHGHAADSFAFKAG 561

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ F S G +Y   V +LP G  +  G+ +  ++ L  G +I    
Sbjct: 562 DGLYGTFECRTVDQLIVFGSNGRLYSVPVAQLPGG--RGDGQPVTTLIELEPGTQIAHYF 619

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
             P          ++ A   G     ++   +  N+ GK  + L   + + +       +
Sbjct: 620 AGPVQAQ------LLLAGSGGYGFVAQVEHMVSRNKGGKAFVALGEGETLCAPSHVAGTS 673

Query: 695 ---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                     +   +  G+ + F I  ++    +   G+  I+L   D +   A 
Sbjct: 674 ASQPLAAATHVCCASAGGRILTFDIGELKQM-DKGGRGLMLIALEDKDSLAGAAA 727


>gi|326332643|ref|ZP_08198911.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949644|gb|EGD41716.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 643

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 254/673 (37%), Positives = 358/673 (53%), Gaps = 51/673 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +      ++ E+ I    I +EM++S+L Y+ +VI  RA+PD RDGLKPV RRILF M 
Sbjct: 4   GKTTQDLPDDFEEHILDTDIGEEMRSSFLEYSYSVIYSRALPDARDGLKPVQRRILFTMN 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            MGV  ++ +VKCARI GEVMGK HPHG+ AIYDAL RMAQ W++RL +I+G GNFGS  
Sbjct: 64  DMGVRPDRGHVKCARIVGEVMGKLHPHGDGAIYDALVRMAQPWAMRLPMIDGHGNFGSPG 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE R+  AA  + DD+ +DTVDFRPNYD    EP VL A  PN+LVNG  
Sbjct: 124 GDDPAAAMRYTEARMGPAALAMTDDIKEDTVDFRPNYDSREMEPSVLPAAIPNLLVNGAT 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV+     +I +P  +LD LM+ I GPD PTG  I+G  GI++A
Sbjct: 184 GIAVGMATNMAPHNLVEVIAAARHLIKHPGAELDTLMKFIPGPDLPTGGTIVGLDGIRDA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IE T G R+ IV+TE+P+ +    ++E++  LV+ K+I  IADL+
Sbjct: 244 YETGRGSFKIRATTRIE-TFGRRKGIVITELPFNIGTEKIIERVKTLVQSKKIQGIADLK 302

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T L+  F +N VAL   +P    L  +L+
Sbjct: 303 DLTDRQHGTRLVIEVKNGFVPEAVLEQLYKMTPLEDSFGINNVALVDGQPRTLGLKELLE 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R +VV RR+++  +KA DR H++ GL IA+ ++DEV+++IR S N   A+  LM 
Sbjct: 363 VFLGHRYDVVRRRSQFRRDKAADRLHLVDGLLIAILDIDEVIQLIRASENAGEAKDRLMS 422

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LS+ Q   IL++ L RLT   + ++  E + 
Sbjct: 423 --------------------------VFDLSQPQAEYILDMALRRLTKFSKIELEKERDE 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVRE 536
           L   I+    IL     L  ++  EL  V     TPRRT ++              +  +
Sbjct: 457 LQATIEYLDSILGDDEMLRKVVSDELGEVAKTFGTPRRTVLLASAGTPALEAMSLEVADD 516

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
                +S  G + R   +            +G    + D +  +   +    +   +S G
Sbjct: 517 PCFAMLSSTGLLARSSDAEPFT--------TGSARANHDVIVSVVPATARGQIGVLTSRG 568

Query: 597 FVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            + +  V  LP   P       + G  L  +LSL   ER   +     D        +  
Sbjct: 569 RLVRLGVLDLPAMPPTHGDPNLSGGLPLSALLSLESDERALALTTLATD-----GPGIAL 623

Query: 651 ATKHGNVRRNKLS 663
            T+ G V+R    
Sbjct: 624 GTRLGVVKRVNPE 636


>gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
 gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
          Length = 747

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 384/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPISL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|87123344|ref|ZP_01079195.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
 gi|86169064|gb|EAQ70320.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
          Length = 831

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 290/823 (35%), Positives = 437/823 (53%), Gaps = 63/823 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   LD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHQGLLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  VA++  P++  D L+ +I GPDFPTG  +L  +G++  Y +GRGSI +R
Sbjct: 183 PHNLGEVVDALVALVRQPELSDDKLLTLIPGPDFPTGGEVLLGSGVRETYLSGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  +V+TE+P+Q++KA  +EK+AE V E RI  IAD+RDESDR 
Sbjct: 243 GVAHIEEVQPGKGRHKRNAVVITELPFQLSKAGWIEKLAEQVNEGRIGGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R +    +L  L R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDSDPGKVLADLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + ++RRT + L K  DR  V+ GL  A+  L +V+ +I+ + +  +AR  LM        
Sbjct: 363 QTLIRRTSHALRKTEDRLEVVEGLNRALEALQQVISMIQEARDAASARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R E   L  E   
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRKEAEELRQERSR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE---------- 536
              +L  R  LL  +  EL  ++    TPRRTR++EG   +  E    +           
Sbjct: 457 LQRLLEQRDVLLAALVDELKQLRKRFATPRRTRLIEGGDHLLAERAASQRPNAELQRKQA 516

Query: 537 ------DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                 D  + +   G VK +   V            G    +      +  ++    +L
Sbjct: 517 LGALPGDARLLIQADGQVKVISPQVLGRMHLQDAAALGD---EPSPARLILPIAPPPRLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYV 648
             ++ G V     W      P A  + L   +   +GE +  ++  P  +D+ +   L +
Sbjct: 574 ALTAQGRV-ALVRWEFAGQQPGALERFLPTAM---EGETVINLLQLPDTDDDHASRTLSL 629

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              +  G  +R  L D  +++      +KL     + +   C++   I L T +G+ +R 
Sbjct: 630 GLLSSDGRFKRLPLQDLQELSGRAASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVLRL 689

Query: 709 PISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           P+        G+ + G   + L  G+Q++  A+ L ADA   + I   +     RR +  
Sbjct: 690 PVDDTALPLMGKLAQGPVALRLLPGEQLVG-AVSLAADA-PGQLIAATRQGRLIRRPLGD 747

Query: 768 DTEEITSLKNDSSVE---GNISEERCQELKLKEQFILTVSEKG 807
                     D +++       ++R   + L    +  +S +G
Sbjct: 748 LRLCHRGDLGDLAIDLNATAAPDDRLVSVCLATPLLGLISSQG 790



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 61/145 (42%), Gaps = 7/145 (4%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  ++   A ++  + +    T+++ ++ +      +   +   +   +  +S  G  K
Sbjct: 580 RVALVRWEFAGQQPGALERFLPTAMEGETVINLLQLPDTDDDHASRTLSLGLLSSDGRFK 639

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE- 869
           R    D  +   SG+      + +     +L A    ++   I LV+D G ++R+PV++ 
Sbjct: 640 RLPLQD--LQELSGRAASVLKLKEG---VSLQAGVICSEGGTIALVTDIGRVLRLPVDDT 694

Query: 870 -IRIASRATKGVVIFSTAKDERVVS 893
            + +  +  +G V       E++V 
Sbjct: 695 ALPLMGKLAQGPVALRLLPGEQLVG 719



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 10/173 (5%)

Query: 731 KGDQVISMAIVLHADADYDERIC---YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +G+ VI++  +   D D+  R      +      +RL   D +E++              
Sbjct: 605 EGETVINLLQLPDTDDDHASRTLSLGLLSSDGRFKRLPLQDLQELSGRAASVLKLKEGVS 664

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVF 845
            +   +  +   I  V++ G   R    D    +  +  +G  A  +    ++   V++ 
Sbjct: 665 LQAGVICSEGGTIALVTDIGRVLRLPVDDTALPLMGKLAQGPVALRLLPGEQLVGAVSLA 724

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST----AKDERVVSV 894
                 Q+I  + +G LIR P+ ++R+  R   G +        A D+R+VSV
Sbjct: 725 ADAPG-QLIAATRQGRLIRRPLGDLRLCHRGDLGDLAIDLNATAAPDDRLVSV 776


>gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
 gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
          Length = 771

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 266/742 (35%), Positives = 400/742 (53%), Gaps = 35/742 (4%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++    ++ +  E G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MSDLTDDNNMDPPETGEVLEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG+
Sbjct: 61  MRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+  AA  LL+ L ++ VD+R NYDG+  EPVVL A +PN+L NG 
Sbjct: 121 IDGDNPAASRYTEARMTAAAEALLEGLNENAVDYRENYDGTLTEPVVLPATFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMATNIP HN+ E+VD C+ +I  P+   + L+E++ GPDFPTG VI+  +  I 
Sbjct: 181 SGIAVGMATNIPPHNIPELVDACLHLIKAPNARDETLIEMVPGPDFPTGGVIVEPKENIL 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           NAYATGRGS  +R    IEK    + QIVVTEIPYQV K+ ++EKIAE+++ K+I  +AD
Sbjct: 241 NAYATGRGSFRLRCKWEIEKLDRGQWQIVVTEIPYQVQKSKLIEKIAEVIQLKKIPILAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGI 357
           +RDES      V+    +    +V++N LYR + L+  FS+NM V ++G  P+  +L  +
Sbjct: 301 VRDESADDVRMVIEPKSKNVDPEVLMNMLYRNSDLEVRFSMNMNVLIDGLTPKVCSLKEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV++RR+++ + K   R  VL G  +A  NLD V+ IIR+  +P+ A   L
Sbjct: 361 LRAFLDHRREVLIRRSQHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAA---L 417

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++  W+ +  + + +       +        LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 418 IREDWSLTHKRAMDE---TDYLSPALRDEEGLSEVQAEAILNMRLRSLRRLEELELLREQ 474

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL--LDMEDE 530
           ++L  E  E  D+L S       I ++L   + +         RRT   E     D+  E
Sbjct: 475 SALMEERAELEDLLDSDDLQWSRISEQLRETRKQFGKNYKGGARRTLFAEAAEVEDVPIE 534

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + +  S +G+V+ +   V  A          +  +D D    +F   T   +L
Sbjct: 535 AMIEREPITIVCSKMGWVRALSGHVDLA--------RELKFKDGDEARFMFHAETTDRLL 586

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F + G  Y      LP G  +  G+ L  ++ L     I       +         ++ 
Sbjct: 587 VFGTNGRFYTVSASNLPGG--RGMGEPLRLMVDLPNEADIV------DFFIHQPERKLLV 638

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+      +D I   R+GK  + +     +  V      + +    +  + + FPI
Sbjct: 639 ASSAGDGFIVPEADVIAQTRTGKQVLNVKDG-VMAKVCITVTGDHVACVGENRKVLVFPI 697

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +         GVR      G
Sbjct: 698 EELPEMG--RGKGVRLQKYKDG 717



 Score = 41.8 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+ +L  S  G G      D     R+GK +         + G +  V      D 
Sbjct: 629 IHQPERKLLVASSAGDGFIVPEADVIAQTRTGKQVLNV------KDGVMAKVCITVTGDH 682

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  V +   ++  P+ E+    R  KGV +      
Sbjct: 683 VACVGENRKVLVFPIEELPEMGRG-KGVRLQKYKDG 717


>gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 761

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/815 (29%), Positives = 403/815 (49%), Gaps = 80/815 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDEII----INRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SDLGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L + A  LL++LG+ TVD+ PN+DG+ +EP VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEAKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+ + C  ++DN   +L  ++  + GPD+PT A +I  +  I+
Sbjct: 177 TGIAVGMATDIPPHNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADIQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E        +V+T +P+Q + A +LE+IA  ++ K++  ++D
Sbjct: 237 KLYETGRGSIKMRAVYSEESGD-----VVITALPHQASGAKILEQIAAQMQAKKLPMVSD 291

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++   R    DV  ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPTRLVITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ +R++ V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + 
Sbjct: 352 TILTEWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKP---KP 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AILEL+L  L  L    I+ 
Sbjct: 409 ELMSR--------------------------FGLSDKQAEAILELKLRHLAKLEEMKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +L S  RL  +IK+E+L+  ++    RR+ IVE      + +++ +
Sbjct: 443 EQDELAAERDKLQQLLGSDRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  +  D         ++   +F  
Sbjct: 503 PAESVTVVLSEKGWA--------RCAKGHDIDAEGLSYKAGDGYLSSAEGKSNQPAVFMD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ L    S+  GE     +   +D         +  + 
Sbjct: 555 SSGRTFSCDAHGLP--SARSQGEPLTGRFSIVGGESFQHAIMAQDDSK------FLVGSD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +  +++          +  L  +  G+ + FP+ 
Sbjct: 607 AGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDTDWCLSISNEGRMLMFPLR 666

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
              + +     G + I++      ++ + V  + +V    A           + A +R +
Sbjct: 667 D--LPSLGKGKGNKLINIPSAKSQSREEYVKILTVVPDGTAIK---------VGAGKRNM 715

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +   E++T  + +    GN      Q +   E  +
Sbjct: 716 TLSAEDLTHYQGERGRRGNKLPRGLQRVDTVEVVV 750


>gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
 gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
          Length = 784

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/778 (30%), Positives = 372/778 (47%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++              ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPTLDFTTAGDAGDALDLAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  LI+G
Sbjct: 61  DRMGLGYSGPTRSTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL +    LLD++ + TVDF PNYDGS +EP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLSRITSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL E+ D C+A+I  P +  D L+ ++ GPD+P G  I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREIADACIALIKTPSLSQDDLLALVPGPDYPGGGQIIS 240

Query: 234 RTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             G I +AY TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   K 
Sbjct: 241 SAGDIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQRVLEEIEEITNPKV 300

Query: 293 IVDIAD------------------LRDESDRQGYRVVIELKR--GASADVILNQLYRYTS 332
                                   +RDES +     ++   +        ++  L  +TS
Sbjct: 301 KAGKKALSQDQTQLKASMLAVLDVVRDESSKDAPVRLVFEPKTGKTPQQELITALLAHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L++   +N+  +    KP + +L  +L+ ++AFR+  + RR+++ L K  DR H+L G  
Sbjct: 361 LETSAPINLTMVGLDGKPVQKSLRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+DEV+ IIR +  P+ A   L+ R                            LS+
Sbjct: 421 TVLLNIDEVIAIIRAAEEPKAA---LIAR--------------------------FNLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L     +  DIL++   L   + +E+ +    
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKELRESQGKLEDILNNPGSLRRTMVKEIEADAKT 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      + +   +V E + V VS  G+V        RA+   G   +    
Sbjct: 512 FADARRTLIQAEKKAVAE-VKVVDEPVTVIVSQKGWV--------RARTGHGHEAASFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   ++ F S G VY   V +LP G  +  G+ +  ++ L  G ++ 
Sbjct: 563 KAGDGLYATFECRTVDQLIGFGSNGRVYSVPVAQLPGG--RGDGQPVTTLIELESGTQLL 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL------ 685
                P       +  ++ +   G      + + +   + GK  + L   + +       
Sbjct: 621 HYFAGPA------SATLLLSNSGGYGFLASVENLVSRQKGGKAFLTLGEGETVCPPSHAA 674

Query: 686 ---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                +       +   +  G+ + F IS ++  A     G+  I L   DQ+   A 
Sbjct: 675 GSTGAQPLPPATHVACASAGGRILTFEISELKTMA-NGGRGLMLIDLEPKDQLAGAAA 731


>gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
 gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
          Length = 780

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 257/776 (33%), Positives = 389/776 (50%), Gaps = 81/776 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   II  +EE   G   +++    + +YL YAI+ I  RA+PD+ DG KPV RRILF M
Sbjct: 1   MDTEIILDEEESTDG---LTLARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G+V+GKYHPHG++A YDA+ RMAQD+SLR  L++GQGNFGS 
Sbjct: 58  HEMGLGPAAKPVKSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD++ + TV+F PNYDGS  EP +L AR P +L+NG  
Sbjct: 118 DGDGAAAMRYTEARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKN 239
           GIAV MAT IP+HNL EV    +A+I +P +  +ALM+I+ GPDFP G  I+  +  +  
Sbjct: 178 GIAVAMATEIPSHNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
           AY +GRGSI +R   HIE+ +  + Q+VV E+P+ V+   +LE++ EL   K        
Sbjct: 238 AYRSGRGSIRVRARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKAL 297

Query: 292 ---------RIVDIAD-LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSV 339
                    +I+++ D +RDES R+    ++   + +  +  +++N L   TSL++  S+
Sbjct: 298 TPEQLQAKSQILNVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSI 357

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V L    +P + TL  IL+ ++ FR   V RR+ + L K  DR H+L G  + + N+D
Sbjct: 358 NLVMLGQDKRPRQKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L+E Q   IL
Sbjct: 418 EVIRIIRESDEPKPA-----------------------------LMQAFGLTERQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E K+   +L S + L   + +E+ +        RRT
Sbjct: 449 EIRLRQLARLEAIRIEQELKELFDERKKLQGLLGSEATLKKAVIKEIEADIKTYGDDRRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I         E   V E + V +S  G+V        R+++  G        +  D + 
Sbjct: 509 LIE-AAEKAAVEARQVEEPVTVIISAKGWV--------RSRQGHGHDARQFNFKTGDELA 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             + V T   +   +S G VY   V  LP  S +  G  + + + L  G +I      P 
Sbjct: 560 GAYEVKTTDQLHALASNGRVYSIPVAGLP--SARGDGVPVTSFVELEAGSQILHAFAAPA 617

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQEND 695
           D        V+ AT+ G        D+    ++GK  + L+  D  L          +  
Sbjct: 618 DAG------VLLATEKGFGLTCVAGDWQSRMKAGKHFLTLEEGDVPLPPVLFDASRTDAT 671

Query: 696 ILLTTKL------GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           ++  +        G+ + +P+S ++    +   GV  + L K +++  + +     
Sbjct: 672 VVCLSDGQGGGDKGRVLAYPVSEVKTL-HKGGRGVTLMGLEKKEKLRQVIVAADTG 726



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 10/185 (5%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R  +   GD++     V   D  +        +      L S   + +          G 
Sbjct: 548 RQFNFKTGDELAGAYEVKTTDQLHALASNGRVYSIPVAGLPSARGDGVPVTSFVELEAG- 606

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            S+         +  +L  +EKGFG    + D++   ++GK     +  + +     V  
Sbjct: 607 -SQILHAFAAPADAGVLLATEKGFGLTCVAGDWQSRMKAGKHFLTLE--EGDVPLPPVLF 663

Query: 845 FPVNDNDQIILVSD------KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
                +  ++ +SD      KG ++  PV+E++   +  +GV +    K E++  V    
Sbjct: 664 DASRTDATVVCLSDGQGGGDKGRVLAYPVSEVKTLHKGGRGVTLMGLEKKEKLRQVIVAA 723

Query: 899 ESEIV 903
           ++ +V
Sbjct: 724 DTGLV 728


>gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 751

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 388/749 (51%), Gaps = 62/749 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 5   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 64

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     A
Sbjct: 65  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 124

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGM
Sbjct: 125 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 184

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+
Sbjct: 185 ATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 244

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD 
Sbjct: 245 GSIKMRAVWKKEDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDH 299

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++
Sbjct: 300 ENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R  
Sbjct: 360 VFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR-- 414

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q  AIL LRL  L  L   +++ E + L  
Sbjct: 415 ------------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V
Sbjct: 451 ERDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y 
Sbjct: 511 ILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYA 562

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 563 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAG 718
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 615 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 674

Query: 719 RNSVGVRGIS---LAKGDQVISMAIVLHA 744
                +  IS     +G+++++  +++  
Sbjct: 675 GKGNKIINISAQAAKEGNELLARLLLVKP 703


>gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 750

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 250/751 (33%), Positives = 387/751 (51%), Gaps = 74/751 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+    +++ ++ +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ + KY K
Sbjct: 10  EGLERRPMSEYVEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKASAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE
Sbjct: 70  SARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  LL +LG+ T ++RPN+D +  EP +L AR PNVL+NG  GIAVGMAT+IP 
Sbjct: 130 SKLSKYADALLSELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ ++DNP  D+  LME I+ PD+PT A +I  +  I+N Y TGRGSI +R
Sbjct: 190 HNLNEVVSACLHMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYETGRGSIKMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + H E        I+VT +P+Q + + +LE+IA  +R K++  + DLRDESD +    +
Sbjct: 250 AIWHREDGD-----IIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDESDHENPTRL 304

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           +   R      D +++ L+    L+  + VN+  +    KP    L  I+K ++ FR +V
Sbjct: 305 VITPRSNRVDVDALMDHLFATCDLERSYRVNLNIIGINGKPGVMNLRQIIKDWLLFRTDV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR  Y L K   R H+L GL IA  N+DEV+ +IR    P+ A   L+ R        
Sbjct: 365 TRRRLSYRLEKVDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPA---LIAR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q   IL+ +L +L  L    IR E + L  E  E  
Sbjct: 414 ------------------FGLSDIQAEYILDTKLRQLARLEEFKIRAEQDELAKEKAELE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL S +RL  ++K+EL +  +E    RR+ +V         ++D +  E + V +S  G
Sbjct: 456 LILGSETRLKTLVKKELKAAAEEFGDERRSPLVARGEASAFNEKDLLTAEPITVVLSDKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVM----RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++            RG KG          +  D         ++ +V    S+G  Y   
Sbjct: 516 WI------------RGAKGHDIDPTTLSYKSGDKFLSAACGRSNQNVFLQDSVGRFYALG 563

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S + +G+     L++  G   T ++   +D+       V+  T  G     K+
Sbjct: 564 GHTLP--SARGQGEPATGRLNVASGALFTDVIMGADDQK------VLLGTDAGYGFIGKI 615

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNS 721
            D    NR+GK  + L    +ILS +     N  I   +  G+ + FPI+ +   A    
Sbjct: 616 GDLYTKNRAGKAVVSLPKGAKILSPKMVNDANALIAAVSNEGRLLVFPIAELPELA--RG 673

Query: 722 VGVRGISL------AKGDQVISMAIVLHADA 746
            G + I++      A+ + VI   ++   D+
Sbjct: 674 KGNKIINIPGSRLQAREEFVIDYGVISEGDS 704



 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 71/179 (39%), Gaps = 15/179 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+ +S A        + +      +      L S   +   +    +   G +  + 
Sbjct: 533 KSGDKFLSAACGRSNQNVFLQDSVGRFYALGGHTLPSARGQGEPATGRLNVASGALFTDV 592

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   +Q +L  ++ G+G      D    NR+GK + +       +   +++   VND
Sbjct: 593 I--MGADDQKVLLGTDAGYGFIGKIGDLYTKNRAGKAVVSL-----PKGAKILSPKMVND 645

Query: 850 NDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
            + +I  VS++G L+  P+ E+   +R  KG  I +       A++E V+    I E +
Sbjct: 646 ANALIAAVSNEGRLLVFPIAELPELARG-KGNKIINIPGSRLQAREEFVIDYGVISEGD 703


>gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
 gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
          Length = 769

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/748 (32%), Positives = 365/748 (48%), Gaps = 73/748 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK----KYVKC 74
           +++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+ +      K +K 
Sbjct: 17  ITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERLGLAFTTAGGPKAMKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+G+YHPHG+ A YDAL RMAQD+S R  LI+GQGNFGS DGD  AA RYTE R
Sbjct: 77  ARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEAR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      LLD++ + TVDF PNYDGS QEP  L AR P VL+NG  GIAVG+AT IP+HN
Sbjct: 137 LAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGASGIAVGLATEIPSHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           L EV    VA+I    +  D L  ++ GPD+P G  I+     I++AY +GRGS+ +R  
Sbjct: 197 LREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIRDAYRSGRGSLKVRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE  +  +  +VVTE+P   +   +LE+I EL   K       L  E  +    V+  
Sbjct: 257 WKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKALSAEQTQLKTTVLAV 316

Query: 314 LKRGAS--------------------ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           L                            ++N L  +TSL++  S+N+  +    +P + 
Sbjct: 317 LDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSASINLTMVGADGRPTQK 376

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++  +L  ++ FR E V RRT++ L K  DR H+L G  + + N+DEV+RIIR +  P+ 
Sbjct: 377 SMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNIDEVIRIIRNADEPKP 436

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   L++R                            LS+ Q   ILE+RL +L  L    
Sbjct: 437 A---LIER--------------------------FRLSDRQAEDILEIRLRQLARLEAIK 467

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I  EL SL  E     +IL+S + L   + +E+ +        RRT I      + +   
Sbjct: 468 IEQELKSLREEQGRLEEILNSPAALKRTVVKEIEADAKTHGDERRTLIQAEKKAVAE-VK 526

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +V E + V +S  G+V        RA++  G   +    +  D +   F   T  ++L F
Sbjct: 527 VVDEPVTVVISSKGWV--------RARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLLVF 578

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G VY   V  LP    +  G+ + +++ L  G +       P D        ++ A 
Sbjct: 579 GSNGRVYSVAVSGLPGA--RGDGQPITSMIELESGTQPQHYFAGPAD------ATLLLAN 630

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G     K  D     R GK  + L   ++ L          I   +  G+ + F +  
Sbjct: 631 TGGYGLLAKAGDLQSRQRGGKGFLTLAEGEKPLPPSRADAAGQIACLSLGGRLLVFALDD 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +++   +   G+  + L   D ++S+A 
Sbjct: 691 LKL-QPKGGRGLTLMDLEAKDALVSVAA 717



 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  +L  +  G+G    + D +   R GKG       +     +           QI  
Sbjct: 622 ADATLLLANTGGYGLLAKAGDLQSRQRGGKGFLTLAEGEKPLPPSRADAAG-----QIAC 676

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +S  G L+   ++++++  +  +G+ +      + +VSV    ++
Sbjct: 677 LSLGGRLLVFALDDLKLQPKGGRGLTLMDLEAKDALVSVAAFDKT 721


>gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum]
          Length = 498

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 273/525 (52%), Positives = 368/525 (70%), Gaps = 27/525 (5%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRRIL+ M ++G+   K Y KCARI GEV+GKYHPHG++++YDAL RMAQ
Sbjct: 1   PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+S+R +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ KDTV+F PN+DG  +
Sbjct: 61  DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP VL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG + +IDNP+  +  LM +I+G
Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTGA I+G++GI+ AY TG+G +++R  + IE    +R +I+VTEIPYQVNKA ++E
Sbjct: 181 PDFPTGATIMGKSGIRAAYETGKGRVIVRAKAEIE-EENNRHRIIVTEIPYQVNKAKLIE 239

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            IA+LV++K+IV I+DLRDESDR+G R+VIELK+ A+ +V+LN LY++T +Q  F V M+
Sbjct: 240 NIADLVKDKKIVGISDLRDESDREGMRIVIELKKDANPNVVLNLLYKHTKMQDTFGVIML 299

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           AL   +P+   +  +L  +++F++EV+ RRT + LNKA  RAH+L GL IA+ N+DEV+ 
Sbjct: 300 ALVNNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDEVIS 359

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           IIR S   E AR  LM+R                            LSE Q+ AILE+RL
Sbjct: 360 IIRGSKTSEIARNTLMER--------------------------FNLSEKQSTAILEMRL 393

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL RD I  E   L   I     IL+S  +LLG+IK ELL +K +    RRT I +
Sbjct: 394 RRLTGLERDKIEEEYAELMKLIDYLNSILASEEKLLGVIKDELLQIKTKYGDERRTSIEK 453

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            + +++ ED I  E++VVT++H GY+KR+    Y AQ+RGGKG  
Sbjct: 454 VVNEIDIEDLIQEEEVVVTLTHTGYIKRISADTYSAQKRGGKGIQ 498



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ DE++S         I+  +K  +  R  +      + + S  +  + L    
Sbjct: 347 LRIALDNIDEVIS---------IIRGSKTSEIARNTLMERFNLSEKQSTAILEMRLRRLT 397

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNI 785
             + D++      L    DY      +        +I  +  +I +   D    S+E  +
Sbjct: 398 GLERDKIEEEYAELMKLIDYLN--SILASEEKLLGVIKDELLQIKTKYGDERRTSIEKVV 455

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +E   ++L  +E+ ++T++  G+ KR S+  +    R GKGI+
Sbjct: 456 NEIDIEDLIQEEEVVVTLTHTGYIKRISADTYSAQKRGGKGIQ 498


>gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
 gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
          Length = 752

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 247/752 (32%), Positives = 398/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITFDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ E+ D  + +ID+P  +L  +ME ++GPD+PT A I+  ++ I+  Y TGR
Sbjct: 182 ATDIPPHNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYKTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D +++ L+  T L+  F VN+  +    +P+   L+ ILK ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++E+Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  +IK+E+ +  D+    RR+ +VE      M + D +  E + V
Sbjct: 448 EREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLVERAEAKAMTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L+++ G  I  ++   EDE  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNISAGTSIRQVV-MGEDEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  N+SGK  + L    E+++       + N IL  T  G+ + FPI  +   + 
Sbjct: 612 KGSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESNQILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++ +S  + +  +A 
Sbjct: 672 GKGNKIINIPSAKAKEREEFVSHLMAIPENAT 703



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 21/218 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +         G + ++ AKG        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWIRHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +   EQ  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLNISAG-----------TSIRQVVMGEDEQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    N+SGK +     S      + +A     +++QI+ ++++G ++  P+ 
Sbjct: 608 GFVCKGSDLLSKNKSGKALVNLPQSSEVIAPSPIADL---ESNQILAITNQGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           ++   S+  KG  I +        ++E V  +  I E+
Sbjct: 665 DLPQLSKG-KGNKIINIPSAKAKEREEFVSHLMAIPEN 701


>gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 750

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 234/725 (32%), Positives = 370/725 (51%), Gaps = 58/725 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI    + +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HN+ E+ +  V +IDNP   LD L+ +++GPD+PT A I+  +  I+  Y  GRGS+ +R
Sbjct: 187 HNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY--R 309
            V   E       +I++T +P+Q + + ++ +IAE +  K++  + D+RDE+D +     
Sbjct: 247 AVWKKEDG-----EIIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHENPIRI 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I        D ++  L+  T L+  + VNM  +    +P    L+ IL  ++ FR   
Sbjct: 302 VLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDNRPAVKNLVQILTEWLQFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y LNK  DR H+L GL IA  N+DEV+ +IR    P+ A   L+ R        
Sbjct: 362 VTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAA---LIDR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AIL LRL  L  L  ++++ E + L  E     
Sbjct: 411 ------------------FGLSETQAEAILNLRLRHLAKLEENELQAEKDRLEEERDSLQ 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+        +PR + +V+      + + D    E + V +S +G
Sbjct: 453 LILGSERRLNTLIKKEIQQDAQTYASPRLSPLVQRAEAKAISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+         Q            +  D         ++ + +F  S G  Y      L
Sbjct: 513 WVRCAKGHDIDVQNLS--------YKAGDKYLSHAYGKSNQAAVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   LSL  G  +  ++         +   ++ A+  G     +  D I
Sbjct: 565 P--SARSQGEPLTGKLSLPAGASVEHVLM------EQDKQALLMASDAGYGFICQFDDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L+      EN  ++  T  G+ + FP+  +   A      + 
Sbjct: 617 ARNKAGKALISLPENAKVLTPLRIDNENARLVALTSAGRMLIFPVKDLPSLAKGKGNKIV 676

Query: 726 GISLA 730
            I  A
Sbjct: 677 TIPAA 681


>gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
 gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
          Length = 898

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/739 (32%), Positives = 412/739 (55%), Gaps = 46/739 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSKIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  FKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGAVI  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAVIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H E     +  IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQE-----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL   ++ LDE++++IR S N   A   L+            
Sbjct: 357 KRTQFNLNKANLRLEIVNGLIKTLSILDEIIKVIRKSENRLDAINNLVI----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q  AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIEKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L  VK +    R++++ +    LD++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNSLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  ++         G+     +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISS 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I   +   E  +S    +++  +K+G ++R ++SD    
Sbjct: 566 SKWKDQGVHINSVATTQPNETIINALVIKEFINSTQ--HLLLVSKNGLIKRTQISDLETK 623

Query: 669 --NRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N+S KI MK+   D ++  +  + + +   + TK G  VR+ I  I + +   S GV+
Sbjct: 624 IFNKSFKI-MKISDDDSLVYADLVSSKTSYCCIVTKNGYAVRYNIEDIPIQST-ISKGVK 681

Query: 726 GISLAKGDQVISMAIVLHA 744
             +L K D +IS   + + 
Sbjct: 682 AANL-KDDYIISALSLQNN 699



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 101/267 (37%), Gaps = 12/267 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E +   +   + E        ++ +K G ++     D   +N++   +      D  +S 
Sbjct: 481 EDLVEDLDVDQKEVIIEKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWISQ 537

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KGDQVISMAIVLHA 744
             C+  + ++L +        P+  I   +     GV   S+A     + +I+  ++   
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKISS-SKWKDQGVHINSVATTQPNETIINALVIKEF 596

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   K+   +R  IS  +T+          +  + S      +  K  +   V
Sbjct: 597 INSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLVSSKTSYCCIV 656

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+  R +  D  I +   KG++A ++    +   +++   + +N  +++ ++K    
Sbjct: 657 TKNGYAVRYNIEDIPIQSTISKGVKAANL----KDDYIISALSLQNNKDVLIFTNKNNYK 712

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDER 890
           R+  N I I  R  KG+ I    K  +
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEKKKNK 739



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 10/159 (6%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   I++   A+Y     Y    S  +          T+  N++ +   +     +E   
Sbjct: 543 LDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVATTQPNETIINALV----IKEFIN 598

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQII 854
             Q +L VS+ G  KRT   D           ++  + KI++  +LV    V+       
Sbjct: 599 STQHLLLVSKNGLIKRTQISDLETK----IFNKSFKIMKISDDDSLVYADLVSSKTSYCC 654

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +V+  G  +R  + +I I S  +KGV   +  KD+ ++S
Sbjct: 655 IVTKNGYAVRYNIEDIPIQSTISKGVKAANL-KDDYIIS 692


>gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
          Length = 750

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/735 (32%), Positives = 376/735 (51%), Gaps = 64/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I        +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDSI------NYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+V
Sbjct: 55  SELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAV 114

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG 
Sbjct: 115 DDPKSFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGT 174

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP HN+ E+ D  V ++DNP   L+ L+ +++GPDFPT A I+  +  I+
Sbjct: 175 TGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEIR 234

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  GRGSI +R     E       +I+++ +P+Q + + ++ +IAE +  K++  + D
Sbjct: 235 KIYQQGRGSIKMRAAWKKEDG-----EIIISALPHQASPSKVIAQIAEQMTAKKLPMVED 289

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDE+D +    ++ + R      D ++  L+  T L+  + VNM  +   YKP    L+
Sbjct: 290 IRDEADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLL 349

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + 
Sbjct: 350 EILTEWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEP---KA 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AIL LRL  L  L    ++ 
Sbjct: 407 ELMAR--------------------------FNLSDAQAEAILNLRLRHLAKLEEHQLQA 440

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E     +IL S  RL  ++K+E+        +PRR+ +VE      + + + +
Sbjct: 441 EQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEML 500

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S +G+V+         Q        G+  +  D         ++   +F  
Sbjct: 501 PTEPVTVILSEMGWVRCAKGHDIDPQ--------GLSYKAGDKYLAHAYGKSNQPAVFID 552

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +++G+ L   L+L  G  +  ++   ED+       ++ A+ 
Sbjct: 553 STGRSYALDPLSLP--SARSQGEPLTGKLTLPAGATVDQLLIENEDQP------LLMASD 604

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISA 712
            G     K +D +  N++GK  + L    ++L   T      +L+  T  G+ + FP   
Sbjct: 605 AGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFPAQD 664

Query: 713 IRVFAGRNSVGVRGI 727
           +   +      +  I
Sbjct: 665 LPELSKGKGNKIVTI 679


>gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336]
 gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336]
          Length = 747

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/735 (31%), Positives = 377/735 (51%), Gaps = 58/735 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 7   EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TV+++ N+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HNL EV D  + ++DNP+ DLD LM  ++GPDFPT A I+  +  I+  Y  GRGSI +R
Sbjct: 187 HNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V   E       +I++T +P+Q + + ++ +IAE ++ K++  + D+RDE+D +     
Sbjct: 247 AVWKKENG-----EIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIRL 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V++        D ++  L+  T L+  + VNM  +    KP    L+ IL  ++ FR + 
Sbjct: 302 VIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLTFRRQT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DE++ IIR    P   +  L+ R        
Sbjct: 362 VTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKP---KEILIAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL LRL  L  L   +++ E N+L  E     
Sbjct: 411 ------------------FNLTDEQAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL+S  RL  +IK+E+        +PR + +VE      + + D    E + + +S +G
Sbjct: 453 QILNSEIRLNNLIKKEIQQDAKTFASPRLSPLVERAEAKAISETDMTPSEPITIILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++  V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDINARALSYKTGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E++S      ++ A+  G     K  D +
Sbjct: 565 P--SARSQGEPLTGKLTLPSGATIEHLLIENENQS------LLMASDAGYGFICKFEDLV 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L     +L          +L+  T + + + FP++ +   +      + 
Sbjct: 617 SRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNRMLVFPVADLPELSKGKGNKII 676

Query: 726 GISLAKGDQVISMAI 740
            I  A   +   + +
Sbjct: 677 HIPAANAKERSELLV 691


>gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 730

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/725 (32%), Positives = 371/725 (51%), Gaps = 61/725 (8%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVD 152
           Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           + PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 180

Query: 213 LDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E        +V++ +
Sbjct: 181 LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISAL 235

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKRGASADVILNQLYR 329
           P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++        D ++N L+ 
Sbjct: 236 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 295

Query: 330 YTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            T L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   R H+L 
Sbjct: 296 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL +A  N+DEV+ IIR    P+ A   LM R                            
Sbjct: 356 GLLVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------------------FG 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL + 
Sbjct: 387 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 446

Query: 509 KDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
                  RR+ +   E    M + D +  E + + +S +G+V        R+ +      
Sbjct: 447 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDA 498

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G+  +  D         ++  V+F  S G  Y      LP  S + +G+ L   L+L  
Sbjct: 499 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPP 556

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           G  +  ++   +D+       ++ A+  G       +D +  NR+GK  + L     ++ 
Sbjct: 557 GATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMP 610

Query: 687 VETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVL 742
                   + +L  T+ G+ + FP+S +   +      +  I     A+G+  ++   VL
Sbjct: 611 PVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVL 670

Query: 743 HADAD 747
              + 
Sbjct: 671 PPQST 675



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 565 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 619

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 620 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 656


>gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424]
          Length = 780

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 256/824 (31%), Positives = 388/824 (47%), Gaps = 76/824 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I+   EE     S+++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDITFQPEEPAD--SLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGS QEP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+     I  
Sbjct: 179 GIAVGMATEIPPHNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            Y  GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K        
Sbjct: 239 IYENGRGSLKVRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKAL 298

Query: 298 ----------------DLRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSV 339
                            +RDES +     ++     +       +  L  +TSL+S   +
Sbjct: 299 TPDQQQLKATVLAVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPI 358

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL  ++AFR + V RRT++ L K  DR H+L G  + + N+D
Sbjct: 359 NLVMIGTDGRPRQKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNID 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LS+ Q   IL
Sbjct: 419 EVIRIIRESDEPKPA-----------------------------LVEAFGLSDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DT 514
           E+RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +       
Sbjct: 450 EIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRRRIIKEIETDAKQYSPEDKD 509

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           PRRT I E      +   ++ E + V +S  G+V        R ++  G        +  
Sbjct: 510 PRRTLIQEERRAAAE-VRVIDEPVTVVMSQKGWV--------RTRQGHGHDPQQFTFKAG 560

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D + + F   T   +L F + G VY   V  LP G  +  G  +  ++ L  G ++    
Sbjct: 561 DALYNTFDCRTVDVLLVFGTNGRVYSVPVSSLPGG--RGDGVPITTLIELQSGSQVAHTF 618

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                     +  V+ AT +GN  +  + D     + GK  + LD  D  L+     +E 
Sbjct: 619 A------GNASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDGDAPLAPAPIGEEA 672

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
                 +  G+ +   +  ++V +     GV  + L   ++++    V            
Sbjct: 673 THAACLSGNGRLLLVALEEVKVLSA-GGRGVILMELEPKEKLLQAVAVGAPGLVLSGAGR 731

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             K  S +    S         +    +E  + E R   ++++ 
Sbjct: 732 GGKPSSQKLAGQSLLPYVGKRARKGKQLEAKLKEPRIDPVRVEP 775



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q +L  +  G G +T+  D     + GK     D    +    L       +      
Sbjct: 622 ASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLD----DGDAPLAPAPIGEEATHAAC 677

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +S  G L+ V + E+++ S   +GV++      E++
Sbjct: 678 LSGNGRLLLVALEEVKVLSAGGRGVILMELEPKEKL 713


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 251/742 (33%), Positives = 380/742 (51%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++  D      I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPDNGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I++ D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSRWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L  G  P   +L G+L
Sbjct: 301 RDESAEDIRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V+VRR+K+ L +   R  +L G  IA  N+DEV++IIR    P+      M
Sbjct: 361 QEWLDHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWS-------------------------LTDTQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG-LLDMED--E 530
            L  E K+   +L+S ++    IK E+ S++D+         RRT+  +    D+ D   
Sbjct: 452 GLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     RLP G  +  G+ +  I+ ++  + I T               ++ 
Sbjct: 564 VFTTGGKFYTIGADRLPGG--RGHGEPIRIIVDMDNDQDIVTAFV------HDPKRKLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   N       + +   R GK  M + + DE       T  + + +  +  + + F +
Sbjct: 616 ASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTG-DHLAIVGENRKMLVFAL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S I         GVR      G
Sbjct: 675 SDIPEMG--RGKGVRLQKYKDG 694


>gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 748

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 387/747 (51%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GS
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ F
Sbjct: 299 PIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AIL LRL  L  L   +++ E + L  E 
Sbjct: 412 ----------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +       G+  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFICSF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGK 673

Query: 721 SVGVRGIS---LAKGDQVISMAIVLHA 744
              +  IS     +G+++++  +++  
Sbjct: 674 GNKIINISAQAAKEGNELLARLLLVKP 700


>gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
 gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
          Length = 748

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 232/739 (31%), Positives = 378/739 (51%), Gaps = 58/739 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL +LG+ TV+++ N+DG+ +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGS 247
           +IP HNL EV +  + ++DNP+ DLD LM  ++GPDFPT A I+  +  I+  Y  GRGS
Sbjct: 184 DIPPHNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +I++T +P+Q + + ++ +IAE ++ K++  + D+RDE+D + 
Sbjct: 244 IKMRAVWKKENG-----EIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHEN 298

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++  L+  T L+  + VNM  +    KP    L+ IL  ++ F
Sbjct: 299 PIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLTF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR +Y L+K   R H+L GL IA  N+DE++ IIR    P   +  L+ R    
Sbjct: 359 RRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKP---KEILIAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q  AIL LRL  L  L   +++ E N+L  E 
Sbjct: 412 ----------------------FNLTDEQAEAILNLRLRHLAKLEEQELQAEKNNLAKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
                IL+S  RL  +IK+E+        +PR + +VE      + + D    E + + +
Sbjct: 450 NSLEQILNSEIRLNNLIKKEIQQDAKTFASPRLSPLVERAEAKAISETDMTPSEPITIIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R  +        +  +  D         ++  V+F  S G  Y   
Sbjct: 510 SEMGWV--------RCAKGHDINARALSYKTGDNYLTHACGKSNQPVVFIDSTGRSYTLD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   L+L  G  I  ++   E++S      ++ A+  G     K 
Sbjct: 562 PLSLP--SARSQGEPLTGKLTLPSGATIEHLLIENENQS------LLMASDAGYGFICKF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNS 721
            D +  N++GK  + L     +L          +L+  T + + + FP++ +   +    
Sbjct: 614 EDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNRMLVFPVADLPELSKGKG 673

Query: 722 VGVRGISLAKGDQVISMAI 740
             +  I  A   +   + +
Sbjct: 674 NKIIHIPAANAKERSELLV 692


>gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 737

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 251/768 (32%), Positives = 393/768 (51%), Gaps = 62/768 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H  +    E   I    + D +   YL YA++ I  RA+PD+RDG KPVHRRI++ M
Sbjct: 1   MTIHTPTP---EGGRIVEEPMGDALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QM +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  L++GQGNFG++
Sbjct: 58  HQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTEC+L  AA  LLD + +D VDFRP YD   +EPVVL A +PN+L NG  
Sbjct: 118 DGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+GE++D C  +++ PD   + L++I+ GPDFPTG V + G   + +
Sbjct: 178 GIAVGMATSIPPHNVGELIDACQLLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R     E       +IVVTEIPYQV K+ ++E++A+L+  K+   +AD+
Sbjct: 238 AYETGRGGVRLRAAWDTEDLGRGVWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGIL 358
           RDES      ++    R    +V++  L++ + L++ F +NM  L+    P    L   L
Sbjct: 298 RDESAEDIRLILEPKSRTVEPEVLMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R  V+ RR+++ + +   R H+L GL I   NLDEV+RI+R    P+ A     
Sbjct: 358 RAFLDHRRVVLNRRSQWRIARVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  LSE+Q   IL+ RL +L  L    I  E  
Sbjct: 413 ------------------------LIATFGLSELQADFILDTRLRQLARLEEMTIEKEFK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVR 535
            L  E+     + SS ++    I +EL +V+  L +PRRT I   V+    +  E  I R
Sbjct: 449 ELSEELAALQALTSSETKQWKAIGKELEAVRKALVSPRRTVIGDAVDASAFVAPEAFIPR 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G++        RA +      S +  ++ D +  L    T   +L  +S 
Sbjct: 509 EAITVILSDRGWI--------RAAKGKVDDPSELKFKEGDKLGFLVPAYTTDKLLVGASD 560

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G ++     +L   S +  G+ L  ++ L++   I  ++    D        ++ A+K G
Sbjct: 561 GRIFTIGADKL--ASGRGHGEPLRLMIDLDEKAEIINVVAHEPDAK------LLIASKAG 612

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAI 713
                  +D +   R GK  +     + +  +      Q + + +  +  + + FP++ +
Sbjct: 613 YGFVAPENDLLAQKRGGKQVLN---GEMLAMLRIPSQPQADHVAVIGENIKTLIFPLAEL 669

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                    GV+  +  +G   ++   V +A+A  +      +  +  
Sbjct: 670 PEMG--RGKGVKLQNYKQG--GLADVTVFNAEAGPEWADGGGRRRNWP 713


>gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32]
 gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus]
 gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32]
          Length = 752

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 245/752 (32%), Positives = 390/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT A I+  ++ I+  Y TGR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D +++ L+  T L+  F VN+  +    +P+   L+ ILK ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P      LM R  
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPV---LMSR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +SE+Q  AIL+++L  L  L    IR E   L  
Sbjct: 412 ------------------------FNISEIQANAILDIKLRNLAKLEEFKIRAEQEELEA 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E      + + D +  E + V
Sbjct: 448 EREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L+++ G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNVSPGTSIRQVV-MGENEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  N+SGK  + L    E++        +   IL  T  G+ + FPI  +   + 
Sbjct: 612 KGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++ +S  + +  +A 
Sbjct: 672 GKGNKIINIPSAKAKEREEFVSHLMAIPENAT 703



 Score = 41.8 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 23/219 (10%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +         G + ++ AKG        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWIRHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +   EQ  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLN-----------VSPGTSIRQVVMGENEQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           G      D    N+SGK +      S++     +  +    D++QI+ ++++G ++  P+
Sbjct: 608 GFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADL----DSNQILAITNQGRMLLFPI 663

Query: 868 NEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
            ++   S+  KG  I +        ++E V  +  I E+
Sbjct: 664 KDLPQLSKG-KGNKIINIPSAKAKEREEFVSHLMAIPEN 701


>gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 253/765 (33%), Positives = 394/765 (51%), Gaps = 61/765 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  + D +   YL YA++ I+ R++PD+RDG+KPVHRR++F M Q+ ++    + KC
Sbjct: 9   HVENTKLVDALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTSGFKKC 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGSVDGD  AA RYTE R
Sbjct: 69  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMRYTEAR 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL+ +  D+VDFRP YDG   EPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 129 LTEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           +GE+    + +I +PD+ +  L+E++ GPDFPTG +I+  R  I  AY TGRGS  IR  
Sbjct: 189 VGEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSFRIRAR 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+      QIVVTEIPYQV K+ ++E++A+L+ +K++  + D+RDES      V+  
Sbjct: 249 WEVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESSADIRLVLEP 308

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             RG   +V++  ++R T L+S F +NM  L     P   +L  +L+A++  R +V+VRR
Sbjct: 309 KSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLVRR 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+    R  +L G      NLDEV+RIIR   +   AR  LM              
Sbjct: 369 TRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIREEDD---ARASLMA------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  ++L +RL  L  L   +IR E  +L  E    L ++ 
Sbjct: 413 -------------AFDLSELQAESVLNMRLRSLRRLEETEIRKEHAALTEERAGLLALME 459

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
             S     I  E+  ++ +        RR+ +      +D+     + RE + V +S  G
Sbjct: 460 KESLRWKHITSEIKGIQKKFGGGTLGARRSTLAAPPAEVDISAALPVEREPLSVILSQKG 519

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++ V        R  G        ++ D +  +    +   +  F++ G  +  +   L
Sbjct: 520 WIRTV--------RGHGVDPEAQKFKEGDGLRLIVECQSSDRLCCFATDGRAFTLRAADL 571

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L+  E I TI P  +D         + A+  G     +  D +
Sbjct: 572 PRG--RGDGQPLRLMIELSNEEDIITIFPVTQDARR------LLASSAGRGMIVREEDMV 623

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+GK  + L    E   V    Q + +L+     + + F ++ +        +GV  
Sbjct: 624 AEKRTGKQVLNLKEG-ESAQVCALAQGDHVLVIGSNKRMLVFALTQLPEMT--RGLGVAL 680

Query: 727 ISLAKG---DQVI--SMAIVLHADADYDERICYMKHMSAQRRLIS 766
               +G   D V+    A V   D      +  MK    +R  + 
Sbjct: 681 QKYKEGHLRDAVVFAGDAGVAWPDPQRVRTLSDMKEQMGKRGDMG 725


>gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 750

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/735 (32%), Positives = 376/735 (51%), Gaps = 64/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I        +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDSI------NYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+V
Sbjct: 55  SELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAV 114

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG 
Sbjct: 115 DDPKSFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGT 174

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP HN+ E+ D  V ++DNP   LD L+ +++GPDFPT A I+  +  I 
Sbjct: 175 TGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIH 234

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  GRGSI +R     E       +I+++ +P+Q + + ++ +IAE +  K++  + D
Sbjct: 235 KIYQQGRGSIKMRAAWKKEDG-----EIIISALPHQASPSKVIAQIAEQMTAKKLPMVED 289

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDE+D +    ++ + R      D ++  L+  T L+  + VNM  +   YKP    L+
Sbjct: 290 IRDEADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLL 349

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + 
Sbjct: 350 EILTEWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEP---KA 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AIL LRL  L  L    ++ 
Sbjct: 407 ELMAR--------------------------FNLSDAQAEAILNLRLRHLAKLEEHQLQA 440

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E     +IL S  RL  ++K+E+        +PRR+ +VE      + + + +
Sbjct: 441 EQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEML 500

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S +G+V+         Q        G+  +  D         ++   +F  
Sbjct: 501 PTEPVTVILSEMGWVRCAKGHDIDPQ--------GLNYKAGDKYLAHAYGKSNQPAVFID 552

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +++G+ L   L+L  G  I  ++   ED+       ++ A+ 
Sbjct: 553 STGRSYALDPLSLP--SARSQGEPLTGKLTLPAGATIDQLLIENEDQP------LLMASD 604

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISA 712
            G     K +D +  N++GK  + L    ++L   T      +L+  T  G+ + FP+  
Sbjct: 605 AGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFPVQD 664

Query: 713 IRVFAGRNSVGVRGI 727
           +   +      +  I
Sbjct: 665 LPELSKGKGNKIVTI 679


>gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 747

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 367/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R     E  +     I +  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 NIYETGHGSVRARATYKKEHAN-----IFIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 HLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAEERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSQKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SDGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
 gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
          Length = 785

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 247/779 (31%), Positives = 378/779 (48%), Gaps = 86/779 (11%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+++   + D  + +    + +    Q +YL YA++V+ GRA+PD+ DG+KPV RRILF 
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 60  MMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +         K VK AR+ G+V+G++HPHG+ + YDAL R+AQD+S R  LI+
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL + A  LLD++ + TVDF PNYDGS +EP  L AR P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
             L+NG  GIAVG+AT IP+HNL E+ D CVA++ NP +  + L  ++ GPD+P G  I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQII 240

Query: 233 GRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
              G I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 292 RIVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYT 331
                  L  E                   S     R+V E K G      ++  L  +T
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHT 360

Query: 332 SLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N+  +    KP + +L  +L+ ++AFR++ + RR+++ L K  DR H+L G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              + N+DEV+ IIR S  P+ A   L++R                            LS
Sbjct: 421 QTVLLNIDEVIAIIRASDEPKAA---LIER--------------------------FRLS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +   
Sbjct: 452 DRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           +    RRT I        +   +      V VS  G+V        RA++  G       
Sbjct: 512 QFADARRTLIQADKRATAEVKVVDEPVT-VVVSQKGWV--------RARQGHGHDAGTFA 562

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D +   F   T  +++ F S G VY   V +LP    +  G+ +  ++ L  G + 
Sbjct: 563 FKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGA--RGDGQPITTLIDLEAGTQP 620

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--- 687
                 P       N  ++ A   G      +      NR GK  + L   +++      
Sbjct: 621 VHYFAGPA------NAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHA 674

Query: 688 ------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                 +       +   +  G+ + F I+ ++  A     G+  I L   D +   A 
Sbjct: 675 AFTSGSQPLAPATHVCCASAGGRILTFEITELKQMA-NGGRGLMLIDLEPKDTLAGAAA 732


>gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
 gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
          Length = 752

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 245/752 (32%), Positives = 390/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT A I+  ++ I+  Y TGR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D +++ L+  T L+  F VN+  +    +P+   L+ ILK ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P      LM R  
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPV---LMSR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +SE+Q  AIL+++L  L  L    IR E   L  
Sbjct: 412 ------------------------FNISEIQANAILDIKLRNLAKLEEFKIRAEQEELEA 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E      + + D +  E + V
Sbjct: 448 EREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L+++ G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNVSPGSSIRQVV-MGENEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  N+SGK  + L    E++        +   IL  T  G+ + FPI  +   + 
Sbjct: 612 KGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++ +S  + +  +A 
Sbjct: 672 GKGNKIINIPSAKAKEREEFVSHLMAIPENAT 703



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 23/219 (10%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +         G + ++ AKG        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWIRHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S  R   +   EQ  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLN-----------VSPGSSIRQVVMGENEQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           G      D    N+SGK +      S++     +  +    D++QI+ ++++G ++  P+
Sbjct: 608 GFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADL----DSNQILAITNQGRMLLFPI 663

Query: 868 NEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
            ++   S+  KG  I +        ++E V  +  I E+
Sbjct: 664 KDLPQLSKG-KGNKIINIPSAKAKEREEFVSHLMAIPEN 701


>gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
 gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
          Length = 750

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/748 (31%), Positives = 374/748 (50%), Gaps = 62/748 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  +  +S+ +  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++ +  + KY
Sbjct: 8   EEGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D     AA RY
Sbjct: 68  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+I
Sbjct: 128 TEARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIV 249
           P HN+ EVVD    ++ +P   +  LM  +  PDFPT A I+   + +   Y +GRGS+ 
Sbjct: 188 PPHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVK 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   +E+ +     +VVT +PYQV+ A +LE+IA  ++ K++  +ADLRDES  +   
Sbjct: 248 LRGRYTLEEGN-----VVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETPT 302

Query: 310 --VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
             V++        + ++  L+  T L+    VN+  +    +P    L  IL  ++ FR 
Sbjct: 303 RLVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILDEWLRFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L K  DR H+L GL  A  N+DEV+RIIR    P+TA  E          
Sbjct: 363 ATVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTALIE---------- 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AILELRL  L  L    IR E + L  E + 
Sbjct: 413 -------------------AFGLSERQAEAILELRLRHLAKLEEFKIRGEQDELLAERER 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
             ++L + + L  +I++EL    D     RR  +VE      + + + I  + + V +S 
Sbjct: 454 LKELLGNDAALTDLIERELRQDADGYGDARRAPLVERGEAKALSEVELIGADPITVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R+ +      +G+  +  D         ++  ++     G  Y     
Sbjct: 514 KGWI--------RSAKGHEIDPAGLSYKAGDRFHLAARGKSNQPLVLLDDAGRSYTLTAH 565

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S +++G+ +   ++   G R+  +M              + A+  G     +L D
Sbjct: 566 NLP--SARSQGEPITGRINPGAGARMVGVM------LDVPEARYLLASDGGYGFIARLDD 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            I  +++GK A+ +     +L        ++  I + +  G+ + FP+  + V A     
Sbjct: 618 LIGKSKAGKAALSVPKGCNVLPPVAVPEGEDTRIAVVSNEGRLLVFPLEQLPVMAKGKGN 677

Query: 723 G---VRGISLAKGDQVISMAIVLHADAD 747
               + G   A  ++ +    +L A A 
Sbjct: 678 KMIDIPGARAANREEFVRDLAMLPAGAS 705


>gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 747

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 365/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 NIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 QLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDSLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SEGRAYSTAVHTLP--SARGNGEPLTGRFSPGSGASFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +LS       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
 gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
          Length = 796

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 247/791 (31%), Positives = 378/791 (47%), Gaps = 99/791 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQTTLDLSQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 60  ERMGLSYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 119

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 120 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPF 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL- 232
            L+NG  GIAVG+AT IP+HNL EV   CVA+I  P +  + L+ +I GPD+P G  I+ 
Sbjct: 180 SLLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIIS 239

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I +AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 240 SSSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKV 299

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 300 KTGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTS 359

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+ ++    +P + +L  +L+ ++AFR + V RR+++ L K  DR H+L G  
Sbjct: 360 LESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQ 419

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P+ A  E                                LSE
Sbjct: 420 AVLLNIDKVIAIIRASDEPKQALIE-----------------------------AFNLSE 450

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S + +  +I +E+ +    
Sbjct: 451 RQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMRRLICKEIEADAKT 510

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      +  E  +V E   V +S  G+V        R ++  G   + +  
Sbjct: 511 FGDARRTLI-HEEKKVVAEVKVVDEPTTVIISEKGWV--------RTRQGHGVDAATLSF 561

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G VY   V  LP G  +  G+ +  ++ L  G ++ 
Sbjct: 562 KAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGG--RGDGQPVTTMIELEAGTQLL 619

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                 E         ++ +          + D +   ++GK  + L   + + +     
Sbjct: 620 YYFAGSE------GTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVH 673

Query: 692 Q----------------------ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                   + ++  +  G+ + F I+ ++    +   G+  ISL
Sbjct: 674 GVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMP-KGGRGLMLISL 732

Query: 730 AKGDQVISMAI 740
              DQ+   A 
Sbjct: 733 EDKDQLAGAAA 743


>gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116]
          Length = 762

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 250/805 (31%), Positives = 415/805 (51%), Gaps = 70/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLERLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +FF S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAEGLSYKSGDKYLAHARGKSNQQAVFFGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSNIRQVI-MGEEEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K S+ +  NRSGK  + L +  E+++ +T      ++IL  T  G+ + FPI  +   A 
Sbjct: 612 KGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEILAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I      + ++V+S  + L   A           + A +R +     ++ + 
Sbjct: 672 GKGNKIINIPAAKAKEREEVLSHLMALPQGASL--------TLYAGKRKLGLKPADLENF 723

Query: 776 KNDSSVEGNISEERCQELKLKEQFI 800
           + +    G++     Q +   E  +
Sbjct: 724 RGERGRRGSLLPRGLQRVTRIEIEM 748



 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      +    NRSGK +     +        +A  
Sbjct: 585 SNIRQVIMGEEEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAKG-KGNKIINIPAAKAKEREEVLS 693


>gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
 gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
          Length = 748

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 389/749 (51%), Gaps = 62/749 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           AT+IP HN+ E+V+  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+
Sbjct: 182 ATDIPPHNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGK 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD 
Sbjct: 242 GSIKMRAVWKKEDG-----EIVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDH 296

Query: 306 QG--YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     V++        + +++ L+  T L+  + VNM  +    KP    L  IL  ++
Sbjct: 297 ENSIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWL 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R  
Sbjct: 357 AFRRTTVRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTA---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q  AIL LRL  L  L   +++ E + L  
Sbjct: 412 ------------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V
Sbjct: 448 ERDELQLTLGSERRLNTLIKKEIQADAKVFASPRRSPLVERAEAKAISESDLTPTEDVTV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y 
Sbjct: 508 ILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYA 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G     
Sbjct: 560 LDPTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFIC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAG 718
              D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   + 
Sbjct: 612 SFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSK 671

Query: 719 RNSVGVRGIS---LAKGDQVISMAIVLHA 744
                +  IS     +G+++++  +++  
Sbjct: 672 GKGNKIINISAPAAKEGNELLARLLLVKP 700


>gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
 gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
          Length = 748

 Score =  494 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 247/808 (30%), Positives = 416/808 (51%), Gaps = 77/808 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D     G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MNDIVIGED-----GVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKAGSKYKKSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSP 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L K A  LL +LG+ TVD++PN+DG+  EP  L +R PNVL+NG 
Sbjct: 116 DDPKSFAAMRYTESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV + C+ ++DNP  D + L++ I GPDFPT A +I  +  ++
Sbjct: 176 TGIAVGMATDIPQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQ 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+ +R V   E        IV+T +P+Q + A +LE+IA+ +++K++  ++D
Sbjct: 236 KMYHSGRGSVKMRAVYTREDGD-----IVITALPHQASGAKVLEQIADQMQKKKLPMVSD 290

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++   +    DV  +++ L+  T L+  + VN+  +     P+  +L 
Sbjct: 291 LRDESDHENPTRLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGLPQVKSLD 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+K ++ +R   V RR ++ L+K   R H+L GL +A  N+DEV+ IIR    P   ++
Sbjct: 351 MIIKEWLEYRITTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEP---KQ 407

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL++R                            LS+ Q  AILEL+L  L  L    I+ 
Sbjct: 408 ELIKR--------------------------FGLSDKQAEAILELKLRHLAKLEEMKIKG 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  +    L S  RL  ++K+E+ +  +     RR+ IV  +    + + D +
Sbjct: 442 EQDELSKERDQLEKTLGSERRLKTLVKKEITADAETYGDDRRSPIVSRDEAQALSEIDLM 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + + V +S  G++        RA +      +G+  +  D         T+   +F  
Sbjct: 502 GADPVTVVMSEKGWI--------RAAKGHDVDGTGLQYKSGDKFLIQANAKTNQQAIFLD 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  Y   +  LP    +  G+ +   ++L  G++I+T++              + A++
Sbjct: 554 TGGRAYSVNIHGLPGA--RGYGEPVTGSINLASGQKISTMVI------GQPKDQYLMASE 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
            G     +  D +  N++GK  +       I S       +++ ++  +  G+ + FP++
Sbjct: 606 AGYGFITQYEDMVSKNKAGKALLNKPDDKAIHSPVKVSDVEQDWVVAVSNEGRLLTFPVA 665

Query: 712 AIRVFAGRNSVGVRGISLA-KGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + V A     G + I+L   GD+V I ++++   D         M  ++A +R +    
Sbjct: 666 DLPVMA--KGKGNKIINLGTSGDEVLIGISLMKEGD---------MLIVNAGKRHVKMKF 714

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
            ++   + +    GN      Q +   E
Sbjct: 715 SDLEHYQGERGRRGNKLPRGFQNVSSIE 742



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  SE G+G  T   D    N++GK +   +      I + V V  V + D ++ VS++G
Sbjct: 601 LMASEAGYGFITQYEDMVSKNKAGKAL--LNKPDDKAIHSPVKVSDV-EQDWVVAVSNEG 657

Query: 861 TLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRESE 901
            L+  PV ++ + ++  KG  I +   + DE ++ +  ++E +
Sbjct: 658 RLLTFPVADLPVMAKG-KGNKIINLGTSGDEVLIGISLMKEGD 699


>gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2]
          Length = 803

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/791 (31%), Positives = 377/791 (47%), Gaps = 99/791 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 8   MSDQTTLDLSQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAM 66

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 67  DRMGLGYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 126

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 127 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPF 186

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL- 232
            L+NG  GIAVG+AT IP+HNL EV   CVA+I  P +  + L+ +I GPD+P G  I+ 
Sbjct: 187 SLLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIIS 246

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I +AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 247 SSSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKV 306

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 307 KTGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTS 366

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+ ++    +P + +L  +L+ ++AFR + V RR+++ L K  DR H+L G  
Sbjct: 367 LESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQ 426

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P+ A                                   LSE
Sbjct: 427 AVLLNIDKVIAIIRASDEPKQA-----------------------------LIDAFNLSE 457

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S + +  +I +E+ +    
Sbjct: 458 RQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMRRLICKEIEADAKT 517

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      +  E  +V E   V +S  G+V        R ++  G   + +  
Sbjct: 518 FGDARRTLI-HEEKKVVAEVKVVDEPTTVIISEKGWV--------RTRQGHGVDAATLSF 568

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G VY   V  LP G  +  G+ +  ++ L  G ++ 
Sbjct: 569 KAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGG--RGDGQPVTTMIELEAGTQLL 626

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                 E         ++ +          + D +   ++GK  + L   + + +     
Sbjct: 627 YYFAGSE------GTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVH 680

Query: 692 Q----------------------ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                   + ++  +  G+ + F I+ ++    +   G+  ISL
Sbjct: 681 GVPMNARAEHVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMP-KGGRGLMLISL 739

Query: 730 AKGDQVISMAI 740
              DQ+   A 
Sbjct: 740 EDKDQLAGAAA 750


>gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 747

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 237/740 (32%), Positives = 361/740 (48%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 QLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 ---------------------------LMAKFALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + L IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQILAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDSLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SEGRAYSTAVHTLP--SARGNGEPLTGRFSPASGASFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +  ++L+       Q + I+  T  G  +    S
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSDRIVAVTSAGNLLAVAAS 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
 gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
          Length = 796

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/791 (31%), Positives = 377/791 (47%), Gaps = 99/791 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQTTLDLSQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 60  DRMGLGYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 119

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 120 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPF 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL- 232
            L+NG  GIAVG+AT IP+HNL EV   CVA+I  P +  + L+ +I GPD+P G  I+ 
Sbjct: 180 SLLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIIS 239

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I +AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 240 SSSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKV 299

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 300 KTGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTS 359

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+ ++    +P + +L  +L+ ++AFR + V RR+++ L K  DR H+L G  
Sbjct: 360 LESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQ 419

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P+ A                                   LSE
Sbjct: 420 AVLLNIDKVIAIIRASDEPKQA-----------------------------LIDAFNLSE 450

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S + +  +I +E+ +    
Sbjct: 451 RQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMRRLICKEIEADAKT 510

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      +  E  +V E   V +S  G+V        R ++  G     +  
Sbjct: 511 FGDARRTLI-HEEKKVVAEVKVVDEPTTVIISEKGWV--------RTRQGHGVDAGTLSF 561

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G VY   V  LP G  +  G+ +  ++ L  G ++ 
Sbjct: 562 KAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGG--RGDGQPVTTMIELEAGTQLL 619

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                 E      +  ++ +          + D +   ++GK  + L   + + +     
Sbjct: 620 YYFAGSE------STQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVH 673

Query: 692 Q----------------------ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                   + ++  +  G+ + F I+ ++    +   G+  ISL
Sbjct: 674 GVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMP-KGGRGLMLISL 732

Query: 730 AKGDQVISMAI 740
              DQ+   A 
Sbjct: 733 EDKDQLAGAAA 743


>gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
 gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
          Length = 759

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/754 (32%), Positives = 394/754 (52%), Gaps = 62/754 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++     E G   +++ D  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++G+
Sbjct: 1   MTVQTTFEDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D    
Sbjct: 61  KASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKS 120

Query: 126 -AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL + A  LL ++ + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIAV
Sbjct: 121 FAAMRYTESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+I  HNL EV   CV ++DNP  DLD + EI+ GPD PT A +I  R  +K  Y T
Sbjct: 181 GMATDILPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYET 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R V   E+      +I++T +P+QV+ A +LE+IA  +++K++  ++DLRDES
Sbjct: 241 GRGSVRMRAVYTKEQG-----EIIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDES 295

Query: 304 DRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
           D +     V+I        + ++  L+  T L+  + VNM  +    KP+   L  IL  
Sbjct: 296 DHENPTRLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDGKPQVKDLRQILVE 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++++R E+V +R  + L K  DR H+L GL +A  N+DEV+ IIR   +P   + EL++R
Sbjct: 356 WLSWRTEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDP---KAELIKR 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E+Q  AIL+L+L  L  L    I++E N L
Sbjct: 413 --------------------------FGLTEIQADAILDLKLRHLAKLEEFKIQSEQNEL 446

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDM 538
             E K+   IL S +++  +IK+E+    +E    RR+ IV  E      ++D +  + +
Sbjct: 447 EEERKKLEGILGSDAKMRKLIKKEIQDAAEEYGDDRRSPIVEREEAQAFSEKDLLSSDPV 506

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G++        RA +       G+  +  D         T+   +   + G  
Sbjct: 507 TVVISKQGWI--------RAAKGHEIDAVGLNYKSGDAFKLACKGRTNQPTILLDTTGRS 558

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +  +   LP  S + +G+ +   ++L +G  I   +   + +       ++ A+  G   
Sbjct: 559 FTIETHNLP--SARGQGEPVTGRITLPKGSTIDAAVAGKDADK------ILMASDAGYGF 610

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVF 716
             K+SD     ++GK A+ L     I+S       + + +   T  G+ + FP+S +   
Sbjct: 611 VAKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAAVTNEGRLLVFPVSELPEL 670

Query: 717 AGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
           A      +  I     A  ++++     L  D  
Sbjct: 671 ARGKGNKIINIPSARAAAREELVVALATLSKDDT 704



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  S+ G+G      D     ++GK          N I  +    P  + D +  V+++
Sbjct: 600 ILMASDAGYGFVAKISDLTSKTKNGKAALTLP-KNANIISPIKVATP--ETDLLAAVTNE 656

Query: 860 GTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
           G L+  PV+E+   +R  KG  I +       A++E VV++  + + +
Sbjct: 657 GRLLVFPVSELPELARG-KGNKIINIPSARAAAREELVVALATLSKDD 703


>gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis
           M0579]
          Length = 533

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 258/532 (48%), Positives = 361/532 (67%), Gaps = 13/532 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +G+RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDG----------TMYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            +++I     +L  +I + +DILS   R+  II+ EL    ++L   RR+ I
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEE-SNQLWRRRRSEI 531


>gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
 gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
          Length = 747

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 368/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 NIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 HLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  R+ D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYREGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SDGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003]
 gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 767

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 264/740 (35%), Positives = 389/740 (52%), Gaps = 48/740 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T  + S DE       +  ++  +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M 
Sbjct: 13  TATMSSDDETPTSATHAEPLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMR 72

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGN+G++D
Sbjct: 73  ELKLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGNID 132

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE RL   A  LL+ L +D+VDFRPNYDG+  EPVVL A +PN+L NG  G
Sbjct: 133 GDGPAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGASG 192

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNA 240
           IAVGMATN+P HNL E+VDGC+A+I +P I+   L+++I GPDFPTG VI+  +  I  A
Sbjct: 193 IAVGMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANILEA 252

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R    +E     + QIVVTEIPYQV KA ++E++AEL+  K++  +AD+R
Sbjct: 253 YRTGRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALADVR 312

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILK 359
           DES      V+    R      ++  L+R + L+  FS+NM  L   + P+  +L  +L+
Sbjct: 313 DESAEDVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEVLR 372

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+  R EV+ RR+++ L K  +R  VL G  IA  NLD V+ IIR   +P+ A   LM 
Sbjct: 373 AFLDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAA---LMA 429

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +W A                  +   ++L+EVQ  AIL +RL  L  L   ++R E + 
Sbjct: 430 ENWAAE-----------------AGAVVHLTEVQAEAILNMRLRSLRRLEEMELRAERDD 472

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDMEDEDC 532
           L  E      +L+S       I  EL  ++           RRT   E   + ++  E  
Sbjct: 473 LLKERAGLEALLASEVAQWAQISSELEDLRKTWGKATKIGARRTDFAEAGEVEEVPIEAM 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE + V +S +G+V        RA +      + V  +D D         T   ++  
Sbjct: 533 IEREPITVILSKMGWV--------RAMKGHQPLDAEVKFKDGDGQAFALHAETTDRIVLM 584

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP G  +  G+ +  +L +     +T ++     E        + A+
Sbjct: 585 GSNGRAWTLLGANLPGG--RGMGEPVRLMLEMPNEVEVTHVLVPKPGEK------YLLAS 636

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G+       + I   R+GK  + +        V      + +    +  + + FP+  
Sbjct: 637 SEGDGFIAPAEELIASTRTGKQVLNMSDGVR-TRVCRVASGDAVACVGENRKLLVFPLEE 695

Query: 713 IRVFAGRNSVGVRGISLAKG 732
           +   A     GVR      G
Sbjct: 696 LPEMA--RGKGVRLQKFKDG 713


>gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
 gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
          Length = 752

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 245/752 (32%), Positives = 390/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT A I+  ++ I+  Y TGR
Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D +++ L+  T L+  F VN+  +    +P+   L+ ILK ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P      LM R  
Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPV---LMNR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     +SE+Q  AIL+++L  L  L    IR E   L  
Sbjct: 412 ------------------------FNISEIQANAILDIKLRNLAKLEEFKIRAEQEELEA 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E      + + D +  E + V
Sbjct: 448 EREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASTKGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L+++ G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNVSPGTSIRQVV-MGENEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  N+SGK  + L    E++        +   IL  T  G+ + FPI  +   + 
Sbjct: 612 KGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKDLPQLSK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++ +S  + +  +A 
Sbjct: 672 GKGNKIINIPSAKAKEREEFVSHLMAIPENAT 703



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 23/219 (10%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +         G + ++  KG        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWIRHAKGHEVDAEGLNYKSGDKFLASTKGKSNQQAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +   EQ  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLN-----------VSPGTSIRQVVMGENEQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           G      D    N+SGK +      S++     +  +    D++QI+ ++++G ++  P+
Sbjct: 608 GFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADL----DSNQILAITNQGRMLLFPI 663

Query: 868 NEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
            ++   S+  KG  I +        ++E V  +  I E+
Sbjct: 664 KDLPQLSKG-KGNKIINIPSAKAKEREEFVSHLMAIPEN 701


>gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens]
          Length = 756

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/749 (32%), Positives = 378/749 (50%), Gaps = 62/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G+  + +    +N+YL Y++ VI+  A+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAMSELGLTNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ EV    VA++D P   LD L+E ++GPDFPT A +I  R  I+  Y +GRGS
Sbjct: 183 DIPPHNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEIRKIYQSGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRAVGKKEDGS-----AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        + ++N L+  T L+  + +NM  +     P    L+ IL  ++A+
Sbjct: 298 PTRLVIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDNTPAVKGLVEILTEWLAY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+     LMQR    
Sbjct: 358 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPV---LMQR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +S+ Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 411 ----------------------FGISDTQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            +   +L+S  +L  +IK+E+ +        R  R+ E      M + D +  E + + +
Sbjct: 449 DQLQALLASERKLNTLIKKEIQADAQTYGDDRLRRLTERAEAKAMSEHDFVPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      +G+  +  D         ++  V+F  S        
Sbjct: 509 SEMGWV--------RSAKGHDIDPAGLSYKAGDSF-AAVRGKSNQVVVFIDSTERSTAVD 559

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             +LP    Q  G+ L   L+   G  I  ++   +D+       ++ A+  G       
Sbjct: 560 PMKLPSARRQ--GEPLTGKLTPPPGATIEQVLMAADDQK------LLMASDAGYGFVCTF 611

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +D +  NR+GK+ + L      L        ++ +L  T  G+ + FP++ +   +    
Sbjct: 612 NDLVARNRAGKVMITLPDNARALPPMEIHGADDMLLSITAAGRMLMFPVADLPQLSKGKG 671

Query: 722 VGVRGI---SLAKGDQVISMAIVLHADAD 747
             +  I     A G+  ++   VL   A 
Sbjct: 672 NKIVSIPAAQAAAGEDKLAWLFVLPPQAS 700



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 42/232 (18%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-----------RNSVGV----RGI 727
           EI +      ++ +   T+  +                         R++ G      G+
Sbjct: 468 EIQADAQTYGDDRLRRLTERAEAKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGL 527

Query: 728 SLAKGDQVISM-----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           S   GD   ++      +V+  D+           + + RR     T ++T     +  +
Sbjct: 528 SYKAGDSFAAVRGKSNQVVVFIDSTERSTAVDPMKLPSARRQGEPLTGKLTPPPGATIEQ 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                     +   +Q +L  S+ G+G   +  D    NR+GK +     +        +
Sbjct: 588 VL--------MAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNARALPPMEI 639

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                  +D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 640 H----GADDMLLSITAAGRMLMFPVADLPQLSK----------GKGNKIVSI 677


>gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
 gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
          Length = 985

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 261/921 (28%), Positives = 427/921 (46%), Gaps = 97/921 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN  E+      ++DNPD  L  +M+ ++GPD+PT A VI     IK  Y TGRGS
Sbjct: 183 DIPPHNAREIGQALTMLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E+        V+T +P+QV+ A +LE+IA L+R K++  + DLRDESD + 
Sbjct: 243 IRMRAVWQKEEG-----CAVITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHEN 297

Query: 308 YRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R    D+  ++  L+  T L+  + VN+  +    +P    L+ IL  ++ +
Sbjct: 298 PTRLVIVPRSNRVDLEQVMYYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVY 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  + L K   R  +L GL IA  N+DEV+ IIR+   P   + ELM+R    
Sbjct: 358 RRQTVTNRLNHRLEKVLRRLEILKGLLIAYLNIDEVIEIIRYEDEP---KAELMRR---- 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS++Q  AILELRL  L  L    ++ E + L  E 
Sbjct: 411 ----------------------FALSDIQAEAILELRLRHLAKLEEIKLQAESDELEKER 448

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
                +L+S  RL  ++K+E+ +   E    RR+ I   E    + ++D +  E + + +
Sbjct: 449 DSIEKLLNSPRRLNTLLKKEIEADAKEFGDERRSPIRPQEEAKVVNEQDMLPSEPVTIVL 508

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S +G+V        R+ +      S +  R  D         ++  VLF  S G  Y   
Sbjct: 509 SEMGWV--------RSAKGHEIDPSTMSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYSLS 560

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P G  +++G+ L   L+      +  ++     +        + ATK G       
Sbjct: 561 PNDMPSG--RSQGEPLTGKLTFPPDASVKYMLAGAAKQE------YLLATKEGYGSVLSY 612

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQE-----NDILLTTKLGQCVRFPISAIRVFA 717
            +    N++GK  + +    E+L+      E     + +++ T   + +      +    
Sbjct: 613 EEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHWLVIITDKTRILAISAEHLNEM- 671

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHA------------------------DADYDERIC 753
            +   G R ++L K    +   IVL A                          D  +   
Sbjct: 672 NKKGRGTRLVALGKEQSDVIEQIVLIAKNEALTFTVDGQQQTLKAEEISYFSGDVGDEPI 731

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGN------ISEERCQELKLKEQFILTVSEKG 807
            +KH+  +   +    + +   +   +++          +       +  Q +  +   G
Sbjct: 732 PLKHLHPEAVTVIMSEKGLIRCQKGHNIDAKSVGFKTGDDYFDAVEGMSNQAVHLIDTTG 791

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
                       S R  KG   T   K+ +   L  V     +D+I++ SD G      +
Sbjct: 792 QSYTVDVDALP-SGR-SKGDDLTGRLKVQKGAQLRHVVMGESSDKILMASDAGYGFICSI 849

Query: 868 NEIRIASRATKGVVIFSTAKD 888
           +++   +RA  G  + +  ++
Sbjct: 850 DDLTSKNRA--GKSLLTLPEN 868



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 118/366 (32%), Gaps = 38/366 (10%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVTDLFIVSTHTSVLFFSSLGFVY 599
           +  GY   +       + + GKG   V    E    F+ D    +    ++  +    + 
Sbjct: 602 TKEGYGSVLSYEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHWLVIITDKTRIL 661

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 L   + + RG  L+  L   Q + I  I+   ++E+       +  T  G  + 
Sbjct: 662 AISAEHLNEMNKKGRGTRLVA-LGKEQSDVIEQIVLIAKNEA-------LTFTVDGQQQT 713

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            K  +              D  DE + ++    E   ++ ++ G         I   +  
Sbjct: 714 LKAEE--------ISYFSGDVGDEPIPLKHLHPEAVTVIMSEKGLIRCQKGHNIDAKSVG 765

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              G       +G   +S   V   D         +  + + R      T  +   K   
Sbjct: 766 FKTGDDYFDAVEG---MSNQAVHLIDTTGQSYTVDVDALPSGRSKGDDLTGRLKVQKG-- 820

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                 ++ R   +      IL  S+ G+G   S  D    NR+GK +        N + 
Sbjct: 821 ------AQLRHVVMGESSDKILMASDAGYGFICSIDDLTSKNRAGKSLLTL---PENALP 871

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA--SRATKGVVI---FSTAKDERVVSV 894
                     +D I++++  G ++    +E+      +  + V I    + + +++V  +
Sbjct: 872 LPPQRLNDELSDLIMIITQGGRMLIFEASELPTMVKGKGNQMVSIPASQAASGEDKVAWL 931

Query: 895 ERIRES 900
             + E+
Sbjct: 932 RVLPEN 937



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 81/229 (35%), Gaps = 34/229 (14%)

Query: 687 VETCTQENDI------LLTTKLG--QCVRFPISAIRVFAGRNS----VGVRGISLAKGDQ 734
            +   +++ +      ++ +++G  +  +         + R        VRG+       
Sbjct: 490 AKVVNEQDMLPSEPVTIVLSEMGWVRSAKGHEIDPSTMSYRAGDSYHSAVRGM------- 542

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
             S   VL  D+           M + R      T ++T   + S         +     
Sbjct: 543 --SNQPVLFLDSTGRSYSLSPNDMPSGRSQGEPLTGKLTFPPDASV--------KYMLAG 592

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             +Q  L  +++G+G   S  +    N++GKG+             LV     N+   ++
Sbjct: 593 AAKQEYLLATKEGYGSVLSYEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHWLV 652

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-----ERVVSVERIR 898
           +++DK  ++ +    +   ++  +G  + +  K+     E++V + +  
Sbjct: 653 IITDKTRILAISAEHLNEMNKKGRGTRLVALGKEQSDVIEQIVLIAKNE 701


>gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
 gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
          Length = 761

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 396/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSSIRQVI-MSEEEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K +D +  NRSGK  + L +  EI++ +       ++IL  T  G+ + FPI  +   A 
Sbjct: 612 KGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++V+S  + L   A 
Sbjct: 672 GKGNKIINIPAAKAKEREEVLSHLMSLPKGAS 703



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      D    NRSGK +     +        +   
Sbjct: 585 SSIRQVIMSEEEQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAKG-KGNKIINIPAAKAKEREEVLS 693


>gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
 gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
          Length = 739

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 231/740 (31%), Positives = 378/740 (51%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP+   + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  I     D+ +IV+TE+PYQV+ + ++ +IA+ +  K++  ++D+RDESD Q    
Sbjct: 246 RAVYTI-----DKNEIVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQNPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + ++Q  AILEL+L  L  L   +IR E   L  +    
Sbjct: 407 ---------------LMQHFGIDDIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L++   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLANPESLKNLIINELKEDAKKFGDDRRSPIVTRADAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA + G    + +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGGDVDAANLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + L+   G  ++ I  F ED++S     ++  + +G   + + +  
Sbjct: 564 LP--SARGLGEPLSSKLAPASG--VSFIQVFIEDDASE----LLAVSSNGYGFKTQAAQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  +   L +    Q   + + +  G+ +   ++ + V       G +
Sbjct: 616 DTNAKAGKSFLTVADKATALPLLPIQQATHVAILSSAGRLLIVDLTELPVL--NKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L + +Q++SM  +   +
Sbjct: 674 LIQLDEKEQILSMTTLNLDE 693



 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGGDVDAANLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +   E    E  +L VS  G+G +T +     + ++GK         
Sbjct: 575 SSKLAPASGVSFIQVFIEDDASE--LLAVSSNGYGFKTQAAQLDTNAKAGKSFLTVADKA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                    + P+     + ++S  G L+ V + E+ + ++  KG  +    + E+++S+
Sbjct: 633 TALP-----LLPIQQATHVAILSSAGRLLIVDLTELPVLNKG-KGNKLIQLDEKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 764

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 233/759 (30%), Positives = 379/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSD----TDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV   C  ++D P  +L+ L+ ++  PD+PT A +I  +  I 
Sbjct: 177 TGIAVGMATDIPPHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIH 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E+       IV+T +P+Q +   +LE+IA  +  K++  +AD
Sbjct: 237 KIYKTGRGSIKMRAVYTQEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       A+ ++  L+  T L+  + VN+  L    +P+   L+
Sbjct: 292 LRDESDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNLL 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+    
Sbjct: 352 TILTEWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            L+++Q  AILEL+L  L  L    IR 
Sbjct: 410 -LMER--------------------------FDLTDIQAEAILELKLRHLAKLEEFKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +    L S  R+  ++K+E+    +     RR+ +VE      + ++D I
Sbjct: 443 EQDELAKERDKLQQTLGSDRRMSTLLKKEIQEAAEIYGDDRRSPVVERLEAKALNEKDLI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  R  D         ++   +F  
Sbjct: 503 PSESVTVVLSDKGWA--------RVGKGHDLDVQGLSYRAGDAYRASARGKSNQPAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    +L+ G     ++         +N  ++ A+ 
Sbjct: 555 SAGRAFATDAHSLP--SARSQGEPMTGRFNLSAGANFEHVVM------GEDNQVLLMASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + +     +LS     +   +  +  +  G+ + FP+ 
Sbjct: 607 AGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASDYCMAISNEGRMLLFPLR 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +   ++ + +  V+   + 
Sbjct: 667 DLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPEGSS 705



 Score = 44.5 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +      +    Q +L  S+ G+G  T   D    N++GK + +       + G L++  
Sbjct: 587 ANFEHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVP-----KGGLLLSPI 641

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERI 897
            VN+  +D  + +S++G ++  P+ ++    +  KG  I S       A++E V  +  +
Sbjct: 642 RVNEVASDYCMAISNEGRMLLFPLRDLPKLGKG-KGNKIISIPGAKVQAREEFVKVLAVV 700

Query: 898 RE 899
            E
Sbjct: 701 PE 702


>gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 747

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 368/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 NIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 HLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  R+ D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYREGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SDGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
 gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
          Length = 768

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 230/745 (30%), Positives = 380/745 (51%), Gaps = 62/745 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 10  QGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSAAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ T D+ PN+DG+  EP+VL AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 ARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV   C  ++DNP  +L+ L+E ++ PD+PT A +I  R+ I+  Y TG+GSI +R
Sbjct: 190 HNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQTGKGSIKMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            +   E+       IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +     
Sbjct: 250 AIYTEEQGD-----IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDESDHENPTRI 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I        + ++  L+  T L+  + VN+  L    +P+   L  IL  ++ FR E 
Sbjct: 305 VIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNGRPQVKDLKTILSEWLIFRRET 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+     LM+R        
Sbjct: 365 VRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKPKPV---LMER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               ++++Q  AILEL+L  L  L    IR E + L  E  +  
Sbjct: 414 ------------------FGITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
             L S  R+  +IK+E+    +     RR+ ++E      + ++D I  E + V +S  G
Sbjct: 456 LTLGSERRMSTLIKKEIQEAAELYGDDRRSPVIERAEAKALSEKDLIPSEAVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +         R  +      + +  R  D    L    ++  V+F  S G  +      L
Sbjct: 516 WA--------RCAKGHDIDAAALSYRAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  + +++G+ +    +++ G     ++          +   + A+  G       +D +
Sbjct: 568 P--TARSQGEPMTGRFNMSTGVNFEHVVM------GELDAMFLMASDAGYGFVASFADLV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L +  +++S         ++ L  +  G+ + FP+  +          +
Sbjct: 620 SKNKNGKALVSLSTGAQLISPIKVNDITTDNCLAISNEGRMLMFPLRDLPKLGKGKGNKI 679

Query: 725 RGI---SLAKGDQVISMAIVLHADA 746
             I        ++ +S+  V+  ++
Sbjct: 680 ISIPSARAKTREEFVSVIAVVPKES 704


>gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 749

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 248/735 (33%), Positives = 376/735 (51%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    +L++ ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+   R   H E+ +     IVVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYATGRGAFRTRAKWHREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R T L+S  S+N  V + G  P+   L   L
Sbjct: 298 RDESAEDIRVVIEPKSRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ +   +   R  VL G  IA  N+DEV+RIIR    P+ A     
Sbjct: 358 REWLDHLRDVLLRRSAHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LIKAFKLTEVQAEAILNMRLRSLRKLEEMEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
            L  E+K    +L S +R    + +++ +V+D          RRT   +         +E
Sbjct: 449 DLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKRRTVFADAPEHDLAALEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V VS  G+V        R  +   +  S +  + +D +   F   T + +L
Sbjct: 509 SLVEREPVTVVVSDKGWV--------RTLKGHVEDLSNLSFKTDDKLGFAFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y   V +LP G  +  G+ +   + L Q   I ++               + 
Sbjct: 561 LFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQDAAIVSLFV------HTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   R GK  + ++  +E     T    + + +     + V FP+
Sbjct: 613 ASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNE-AKAITTVAGDQVAVIGTNHKMVVFPL 671

Query: 711 SAIRVFAGRNSVGVR 725
             +   A     GVR
Sbjct: 672 DQVPEMA--RGRGVR 684


>gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 747

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 364/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  +  N+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 QLLSEWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SEGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 EVPELDKGKGNKIIEIPKAK 686


>gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 800

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 286/782 (36%), Positives = 412/782 (52%), Gaps = 63/782 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWN 68
           E         S+ DE Q  YL YA++VI  RA+PD+RDGLKPV RRIL+ M   + +  +
Sbjct: 27  EPPPPPAPDTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPD 86

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            KY K A + G+VMGKYHPHG+ AIYDA+ R+AQD+ +R  LI G GNFGSVDGD PAA 
Sbjct: 87  AKYRKSAAVVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAM 146

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L+  A  LL +LG+ TVDFRPNYDG+  EP+VL +R+PN+LVNG  GIAVGMAT
Sbjct: 147 RYTEAKLRPLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMAT 206

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGS 247
           +IP HNLGEV+D CVA+I+N ++    L+  ++GPDFPTG  +   +  ++  Y  G+GS
Sbjct: 207 SIPPHNLGEVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGS 266

Query: 248 IVIRGVSHIEKTSGDR---EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           + +RG   +E+  G R    QIV+T IPY + + A++EKIAE++  K++  + D+RDES 
Sbjct: 267 LKLRGEWQLEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDEST 326

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGIL 358
            +  R+V+ELKRGA A +++  LY+ T L     VN+  L          P R  L  IL
Sbjct: 327 GE-VRIVMELKRGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEIL 385

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+ FR   V RR ++ L + R R  +L G       LDEV+RIIR S     A  +LM
Sbjct: 386 TKFLDFRYATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLM 445

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            L+E QT AILEL+L RL  L    ++ +L 
Sbjct: 446 KR--------------------------FTLNEEQTDAILELKLYRLARLEILLVQKDLG 479

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVRE 536
               E K    +L S ++  GI++ EL+ +K      RRT++V      + + ED IV E
Sbjct: 480 EKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSYGEKRRTKVVGSIDEPEYQAEDFIVAE 539

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D  V +S  G+VKRV         R  K  +   +R+ D V      ST ++V FFS+LG
Sbjct: 540 DANVILSAQGWVKRV---------REVKDLASTRIREGDSVLAAVAGSTRSTVAFFSNLG 590

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------EDESSWNNL 646
             Y  ++  +P       G  +  +  L  GER+  +M F            D +     
Sbjct: 591 ACYVCRIHDVPQS--TGYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPP 648

Query: 647 YVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           + +  T+ G   R  L        RSG+   KL+  DE+L V      + +L  +     
Sbjct: 649 FALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVHAVDGADRVLCASSDAWA 708

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +   +  + + +G    G   + +A+G++++  A+ L             K +      I
Sbjct: 709 LSVAVEELALLSGPG-KGSVVMRVAEGERLVGAALALGPSDVITVETEKGKTLEIAASKI 767

Query: 766 SG 767
           +G
Sbjct: 768 AG 769



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 66/440 (15%), Positives = 128/440 (29%), Gaps = 83/440 (18%)

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL   L          +  EL  L   I            L  +I+             R
Sbjct: 384 ILTKFLDFRYATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRII-----------R 432

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           ++       +   +   + E+    +  L   +   L +   Q+  G+ R+     +   
Sbjct: 433 KSEGKADAAEKLMKRFTLNEEQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEG-- 490

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
                            S    +      L      + G+     +  +  E        
Sbjct: 491 --------------LLRSDAKRWGIVRDELVEIK-GSYGEKRRTKVVGSIDEPEYQ---- 531

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            ED     +  V+ + +    R  ++ D             +   D +L+    +  + +
Sbjct: 532 AEDFIVAEDANVILSAQGWVKRVREVKDLASTR--------IREGDSVLAAVAGSTRSTV 583

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              + LG C    I  +    G      +   LA G+++I++        D         
Sbjct: 584 AFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALMSFDPRALD--------- 634

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                       +  +     + +  F L ++  G G R S   
Sbjct: 635 ----------------------------VPAQTPDSAEPEPPFALAITRGGLGFRFSLRP 666

Query: 817 FR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            R  S RSG+       +K+NE   ++ V  V+  D+++  S     + V V E+ + S 
Sbjct: 667 HRDPSTRSGR-----RFAKLNEGDEVLFVHAVDGADRVLCASSDAWALSVAVEELALLSG 721

Query: 876 ATKGVVIFSTAKDERVVSVE 895
             KG V+   A+ ER+V   
Sbjct: 722 PGKGSVVMRVAEGERLVGAA 741


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 255/743 (34%), Positives = 384/743 (51%), Gaps = 62/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +           GI S+++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MGKETTPPP----SGIESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  LI+GQGNFG+V
Sbjct: 57  RLLKLDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD L ++ VDFR  YDG  +EP+VL   +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARMTDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I NP+ +   L+E I+GPDFPTG +++   G I+ 
Sbjct: 177 GIAVGMATSIPPHNAFELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIRE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E     +  IVVTEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 237 AYETGRGSFRVRARWEVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R   A++++  L++ T L++ FS+NM  L  G  P    L  +L
Sbjct: 297 RDESAEDIRIVLVPRSRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR++Y L +   R  VL G  +A  NLDEV+RIIR    P   + ELM
Sbjct: 357 REWLDHRKEVLIRRSEYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEP---KAELM 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           Q                          T  LS+VQ  AIL +RL  L  L   +IR E +
Sbjct: 414 Q--------------------------TFELSDVQAEAILNMRLRSLRKLEEMEIRKEHD 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG-LLDMEDED- 531
            L  E  +   +L S +R    I +E+  +            RRT   E    D+ D   
Sbjct: 448 KLSAEKDDLTKLLGSDARQWTKISKEIADISKVYGPETEIGKRRTDKSEAPETDLIDIQQ 507

Query: 532 -CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      SGVV +  D +       T   +L
Sbjct: 508 AMIEKEPITVIISEKGWI--------RAMKGHQTDLSGVVFKQGDKLKLSLHAETTDKIL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G  +     RLP G  +  G+ +  ++ +++ + +                 ++ 
Sbjct: 560 LFSTGGKFFTLGADRLPGG--RGHGEPIRLMVEMDEAQDVVNAFV------HKPGRNLLL 611

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT           D +   R GK  + L +  E  S+      + + +  +  + + FP+
Sbjct: 612 ATTEARGFVVSEDDVVANTRKGKQVLNLSAPAE-ASICVEASGDHVAIIGENRKLLVFPL 670

Query: 711 SAIRVFAGRNSVGVRGISLAKGD 733
             I         GVR      G+
Sbjct: 671 VQIPQMG--RGRGVRLQRYRDGN 691


>gi|78183589|ref|YP_376023.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9902]
 gi|78167883|gb|ABB24980.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9902]
          Length = 806

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 294/816 (36%), Positives = 436/816 (53%), Gaps = 67/816 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y KCAR+ G+V+GK
Sbjct: 1   MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYRKCARVVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL-L 143
           YHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE RL   AH   L
Sbjct: 61  YHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP HNLGEVVDG +
Sbjct: 121 EEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD- 262
           A+I  P +  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +RGV+H E+     
Sbjct: 181 ALIRQPGLSDERLLELIPGPDFPTGGEVLLSSGLQDTYLQGRGSIPMRGVAHTEEVQLGK 240

Query: 263 ----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR G RVV+EL+R A
Sbjct: 241 GRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRDGMRVVVELRRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             + +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ +RE  ++RRT + L 
Sbjct: 301 EPEKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYRELTLIRRTSHALR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R                  
Sbjct: 361 KTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVR------------------ 402

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                   + L+E Q  A+L + L RLTGL ++ +R E+++L  E +    +L +R +LL
Sbjct: 403 --------LDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQLL 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
             +  EL ++K    TPRRTR+VEG   +  E    +      +                
Sbjct: 455 DAMVAELKTLKKRFSTPRRTRLVEGGDALIAERAASQRPNTELLRQQALAALPGDGRLLI 514

Query: 559 QRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           Q  G          G+   G      D       +  +     +L  S+ G V     W 
Sbjct: 515 QADGQVKIVTPQVLGRLHFGDPCPVSDAPSPARVILPIEPPPRLLAISANGRV-ALVRWE 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                P A  + L + L   +GE I  I P P  ESS  +L ++ +      +R  L++ 
Sbjct: 574 FAGQQPGALERFLPSGL---EGEPIVAIAPLPMQESSDLSLGLLSSDGR--FKRLPLAEV 628

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGV 724
           ++++      +KL    ++ +   C + +D++L + +G+ +R PI+       GR + G 
Sbjct: 629 LELSGRATSVVKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPINEDVLPRMGRLAQGP 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-------------GDTEE 771
             + L  G+ +I         A        +  +       S             GDT+ 
Sbjct: 689 MTMRLLPGEHLIGALCPTKPTALLVSEQGRLARIDLTSIRSSQRGDLGSMAIQLVGDTDR 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           IT L   S + G +S E  Q     +   L ++  G
Sbjct: 749 ITGLTEASGLIGMVSTE--QRHGRIDPTTLEITNPG 782



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 810 KRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           KR    +   +S R      AT V K+ +   L A    +++  +ILVSD G ++R+P+N
Sbjct: 621 KRLPLAEVLELSGR------ATSVVKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPIN 674

Query: 869 E--IRIASRATKGVVIFSTAKDERVVS 893
           E  +    R  +G +       E ++ 
Sbjct: 675 EDVLPRMGRLAQGPMTMRLLPGEHLIG 701



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 76/511 (14%), Positives = 161/511 (31%), Gaps = 60/511 (11%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             VV  +R    PE   ++L +R+   S+   ++  + +      S   +  + +  R  
Sbjct: 290 MRVVVELRRDAEPEKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYR-- 347

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            EL L R T        + L  +   I    ++          +   +   KD   + R 
Sbjct: 348 -ELTLIRRTSHALRKTEDRLEVVEGLITALNNL--------QAVIAMIQEAKDA-ASARA 397

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           + +V     ++  +      + + +  L  +++  L       R  K R  +++ + D +
Sbjct: 398 SLMV----RLDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQL 453

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            D  +    T    FS+       +     I    A  +    +L           +P  
Sbjct: 454 LDAMVAELKTLKKRFSTPRRTRLVEGGDALIAERAASQRPNTELLRQQA----LAALPGD 509

Query: 638 EDESSWNNLYVVFATKH-----GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
                  +  V   T              +SD     R                +     
Sbjct: 510 GRLLIQADGQVKIVTPQVLGRLHFGDPCPVSDAPSPAR---------------VILPIEP 554

Query: 693 ENDILLTTKLGQC--VRFPISAIRVFAGRN--SVGVRGISLAKGDQVISMAIVLHADADY 748
              +L  +  G+   VR+  +  +  A       G+      +G+ ++++A  L      
Sbjct: 555 PPRLLAISANGRVALVRWEFAGQQPGALERFLPSGL------EGEPIVAIA-PLPMQESS 607

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           D  +  +      +RL   +  E++          +  + +   +  +   ++ VS+ G 
Sbjct: 608 DLSLGLLSSDGRFKRLPLAEVLELSGRATSVVKLKDGVQLKAAVICHEHHDLILVSDIGR 667

Query: 809 GKRTSSYD--FRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQIILVSDKGTLIRV 865
             R    +       R  +G     +      IGAL    P       +LVS++G L R+
Sbjct: 668 MLRLPINEDVLPRMGRLAQGPMTMRLLPGEHLIGALCPTKPTA-----LLVSEQGRLARI 722

Query: 866 PVNEIRIASRATKGVVIFSTAKD-ERVVSVE 895
            +  IR + R   G +      D +R+  + 
Sbjct: 723 DLTSIRSSQRGDLGSMAIQLVGDTDRITGLT 753


>gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N]
 gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N]
          Length = 772

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 252/740 (34%), Positives = 363/740 (49%), Gaps = 70/740 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 22  LTLGLYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARVV 81

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 82  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 141

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL++L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL EV
Sbjct: 142 ARLLLEELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREV 201

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
              CVA+I NP +  + L+ +I GPDF  G  I+     I + YATGRGS+  R     E
Sbjct: 202 AQACVALIRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQFE 261

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           + +  + Q+VV E+P   +   +LE+I EL   K                         +
Sbjct: 262 EMARGQWQLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDAV 321

Query: 300 RDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES +     ++          D  +N L   TS++    VN+V +    +P +  L  
Sbjct: 322 RDESGKDAAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLRS 381

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L  ++AFR E VVRRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P+ A   
Sbjct: 382 VLDEWLAFRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPA--- 438

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R                            L+E Q   ILE+RL +L  L    I  E
Sbjct: 439 LMDR--------------------------FALTERQAEDILEMRLRQLARLEGFKIEQE 472

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L     E     D+L +   L  ++ +E+ +   +    RRT I      + +   +  E
Sbjct: 473 LADKREEQSRLQDLLDNPGSLKRLLIKEIEADAKQHGDERRTLIESAERAVLETKVL-DE 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G++        RA++  G   +    +  D +   F   T  S++     G
Sbjct: 532 PVTVVVSRNGWL--------RARQGHGHDAAQFTFKQGDDLYGAFECRTTDSLIAVGDNG 583

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP  S +  G+ +  ++ L  G RI   +    D         + AT+   
Sbjct: 584 RVYTVAVSALP--SARGDGQPVTTMIDLEAGTRIVHTIAAAADSRW------LLATQSAY 635

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRV 715
               +LSD     R+GK  + LD  D +L      +    + L +   + + F +  ++ 
Sbjct: 636 GFATRLSDMSSRQRAGKQFVTLDKGDVLLRPVPLFEGAVQLALLSSKAKLLVFGLDELKS 695

Query: 716 FAGRNSVGVRGISLAKGDQV 735
            +G    G   + L   D++
Sbjct: 696 LSG-GGRGTILMGLDANDRL 714


>gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
 gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
          Length = 760

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 247/752 (32%), Positives = 396/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV +  V +IDNP  +L  +M  ++GPD+PT A I+  +  ++  Y TGR
Sbjct: 182 ATDIPPHNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D ++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 EFRRSTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++E+Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEKLLGSERRLNTLLKKEIQADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +FF S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAEGLSYKSGDKYLAHARGKSNQQAVFFGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNITAGSAIRQVI-MGEEEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  NRSGK  + L +  E++  +T      ++I+  T  G+ + FPI  +   A 
Sbjct: 612 KGSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIVAITNQGRMLLFPIKDLPQLAK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++++S  I +  DA 
Sbjct: 672 GKGNKIINIPAAKAKEREEILSHLIAVPKDAT 703



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAV 844
           S  R   +  +EQ  L  S+ G+G      D    NRSGK +      S++ E   +  +
Sbjct: 585 SAIRQVIMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPANSEVMEPKTIADL 644

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
               D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E ++S
Sbjct: 645 ----DSDEIVAITNQGRMLLFPIKDLPQLAKG-KGNKIINIPAAKAKEREEILS 693


>gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
          Length = 753

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/797 (30%), Positives = 391/797 (49%), Gaps = 70/797 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D V FR NYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL++ ++GPDFPTG VI+  R  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRG+   R     E+ +     +V+TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYSTGRGAFRTRAKWSQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDIRLVIEPKSRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+++Q  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMRTFKLTDIQAEAILNMRLRSLRKLEEFEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    IL+S       + +++  V+D          RRT   +         +E
Sbjct: 449 NLRAELKGINAILASEKEQWAKVGEQVRKVRDLFGPKTALGKRRTSFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + + VS  G+V        R  +      S +  + +D +   F   T + ++
Sbjct: 509 AFVEREPVTIVVSDKGWV--------RTLKGHVADLSSLAFKQDDKLGTTFFAETTSKLM 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y  +V +LP G  +  G+ +   + L+Q   I ++        S  +   + 
Sbjct: 561 LFATNGRFYSLEVAKLPGG--RGHGEPIRMFIDLDQDAAIVSLFV------STGDRRFLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFP 709
           A+  G       +D +   R GK  + ++  +E  ++    +  + + +  +  + + FP
Sbjct: 613 ASHDGQGFVVGEADCVSNTRKGKQVLNVEMPNEARALTVVGEGADTVAVIGENRKMLLFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +   A     GVR      G           +D         +    +  R  S   
Sbjct: 673 LDQVPEMA--KGRGVRLQKYKDG---------GLSDIVAFNAKAGLTWRDSAGREFSATI 721

Query: 770 EEITSLKNDSSVEGNIS 786
           +E+   + + +  G + 
Sbjct: 722 KELAEWRGNRADAGRLP 738


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 250/742 (33%), Positives = 379/742 (51%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++  +      I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPENGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+N D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSKWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L  G  P   +L G+L
Sbjct: 301 RDESAEDVRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V+VRR+K+ L +   R  +L G  IA  N+DEV+RIIR    P+      M
Sbjct: 361 QEWLEHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWS-------------------------LTDTQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG-LLDMED--E 530
            L  E K+   +L+S  +    IK E+ +++D+         RRT+  +    D+ D   
Sbjct: 452 GLSAEKKQIEALLASNEKQWATIKWEVTNIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     RLP G  +  G+ +  I+ ++  + I T               ++ 
Sbjct: 564 VFTTGGKFYTIGADRLPGG--RGHGEPIRIIVDMDNDQDIVTAFV------HDAKRKLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   N       + +   R GK  M + + DE       T  + + +  +  + + F +
Sbjct: 616 ASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTG-DHLAIVGENRKMLVFAL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + I         GVR      G
Sbjct: 675 AEIPEMG--RGKGVRLQKYKDG 694


>gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
 gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
          Length = 814

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 262/784 (33%), Positives = 395/784 (50%), Gaps = 76/784 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E   +      +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDLIDDGAEPATEFAEP--LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L ++ VD+R NYDG+ +EP+VL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEALLDGLNENAVDYRDNYDGTLREPIVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L+  I GPDFPTG VI+  R  I  
Sbjct: 179 GIAVGMATNIPPHNISELVDACLHLIKVPDARDDTLLNYIPGPDFPTGGVIVEPRENIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRCKWEVEDLGRGQWQIVVTEIPYQVQKSKLVEKLAEVIQTKKVPILADI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGIL 358
           RDES      V+    +    +V++  LYR + L+  FS+NM V ++G  P+  +L  +L
Sbjct: 299 RDESADDVRMVLEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FR EV+ RR+++ + K  +R  VL GL  A  NLD V+ IIR+  +P+ A   LM
Sbjct: 359 RAFLDFRREVLERRSRHRMAKIDNRLEVLQGLITAFLNLDRVIEIIRYDDDPKVA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTM------------------------------- 447
              W+      L   + ++ Y    +G                                 
Sbjct: 416 YEDWSTPHQASLSRAMTEADYRSPLEGVDIAQLVLIADPEAEAMGVLAESTAATPREVPH 475

Query: 448 -------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+VQ  AIL +RL  L  L  D +  E ++L  E     D+L   +     
Sbjct: 476 SYAGRENGLSDVQAEAILNMRLRSLRRLEEDALVRERDTLMEERAGLEDLLEDETLQWDA 535

Query: 501 IKQELLSVKDELDTP----------RRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           I ++L  VK                RRT+  E   + ++  E  I RE + V  S +G++
Sbjct: 536 ISEQLRQVKKTFGRDYVLDGKNVGVRRTQFAEAGEVEEVPLEAMIDREPITVVCSKMGWI 595

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           + +   +  +          +  +D D    +F   T   +L F + G  Y      LP 
Sbjct: 596 RAMSGHIDLS--------RELKFKDGDEGRFVFHAETTDRLLVFGTNGRFYTLSAANLPG 647

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  +  G+ L  ++ L     I  +              ++ A+  G+       + +  
Sbjct: 648 G--RGMGEPLRLMVDLPNEAEIVDLFIHR------PGAKLLVASSAGDGFVVPEDEVVAQ 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            RSGK  + +   D    V T  + + +    +  + + F +  +         GVR   
Sbjct: 700 TRSGKQVLNVRD-DVRAKVCTKVEGDHVACVGENRKVLIFALDELPEMG--RGKGVRLQK 756

Query: 729 LAKG 732
              G
Sbjct: 757 YKDG 760



 Score = 41.1 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +      +L  S  G G      +     RSGK +         ++   V      + D 
Sbjct: 672 IHRPGAKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRDDVRAKVCTKV------EGDH 725

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  V +   ++   ++E+    R  KGV +      
Sbjct: 726 VACVGENRKVLIFALDELPEMGRG-KGVRLQKYKDG 760


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
          Length = 747

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 251/795 (31%), Positives = 398/795 (50%), Gaps = 76/795 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    + +  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+    KY K 
Sbjct: 8   DVEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAGAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYTE 
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEA 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL ++G+ TV++ PN+DG+ QEP +L AR P+VL+NG  GIAVGMAT+IP H
Sbjct: 128 RLAPFAELLLSEVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EV   C+ ++  P+  +  L E + GPD+PT A +I     +   Y TG+GS+ +R 
Sbjct: 188 NLHEVTAACLHLLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--V 310
              +E+ +     IVV  +P+QV+ A +LE+IA+ ++ K++  +ADLRDESD +     V
Sbjct: 248 QYMVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           ++   R    + +++ L+  T L+  + VN+  +    +P+   L  +L  +  FR E +
Sbjct: 303 LVPYARRMDVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLGEWFYFRIETL 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +Y L K  DR  VL GL IA  N+DEV+ IIR    P+     LM R         
Sbjct: 363 RRRFRYRLEKVEDRLQVLAGLLIAYLNIDEVIAIIRDEEAPKPV---LMAR--------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q  AILEL+L  L  L    IR E  +L  E K    
Sbjct: 411 -----------------FKLSDRQAEAILELKLRYLARLEETKIRAENKALAAERKGLEK 453

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGY 547
           +L S SR+  +++QELL+   +    RR+ IVE      ++ +  +  E + V +S  G+
Sbjct: 454 MLGSESRIKDLLRQELLADAKKFGDARRSPIVERSSATVLDKQSLLPAELITVVLSEKGW 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           V        RA +      + +  R  D         ++ S +F  S G  Y      LP
Sbjct: 514 V--------RAAKSQDVNPAALSYRTGDSYRASARGRSNQSAIFLDSTGRSYTLPAHGLP 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S + +G+ L   L +  G     I+    +E      + + A+  G     +      
Sbjct: 566 --SARGQGEPLSGHLQVAPGAEFIAILLAEPEE------FYLMASNAGYGFLCQARHLYT 617

Query: 668 INRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            NR+GK  + + +  + L        + + + + T +G+ + FP+  +   A     GV+
Sbjct: 618 KNRAGKAVLNVSAGAKALPPVPVTDRELDQVAVATNVGRLLLFPLRDLPFIA--RGKGVK 675

Query: 726 GIS-----LAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            I+     LA+G + + ++A+V    A           + A RR ++  +E++   + + 
Sbjct: 676 LINISSTRLAQGQEAVRALAVVSQGGA---------LQVFAGRRHLTLKSEDLEPYQGER 726

Query: 780 SVEGNISEERCQELK 794
           +  G       Q+++
Sbjct: 727 ARRGLTLPRGFQQVE 741



 Score = 41.4 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+F L  S  G+G    +      NR+GK +   +VS   +    V V    + DQ
Sbjct: 591 LAEPEEFYLMASNAGYGFLCQARHLYTKNRAGKAV--LNVSAGAKALPPVPVTD-RELDQ 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ERVVSVERIR 898
           + + ++ G L+  P+ ++   +R  KGV + + +        E V ++  + 
Sbjct: 648 VAVATNVGRLLLFPLRDLPFIARG-KGVKLINISSTRLAQGQEAVRALAVVS 698


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 246/742 (33%), Positives = 379/742 (51%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++   +     I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPQDGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I++ D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSKWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L  G  P   +L G+L
Sbjct: 301 RDESAEDIRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V++RR+++ L +   R  +L G  IA  N+DEV++IIR    P+      M
Sbjct: 361 QEWLDHRRDVLIRRSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWS-------------------------LTDNQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG-LLDMED--E 530
            L  E K+   +L+S ++    IK E+ +++D+         RRT+  +    D+ D   
Sbjct: 452 GLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     RLP G  +  G+ +  I+ ++  + I T               ++ 
Sbjct: 564 VFTTGGKFYTIGADRLPGG--RGHGEPIRIIVDMDNDQDIVTAFV------HDPKRKLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   N       + +   R GK  M + + DE          + + +  +  + + F +
Sbjct: 616 ASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIG-DHLAIVGENRKMLVFAL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S I         GVR      G
Sbjct: 675 SEIPEMG--RGKGVRLQKYKDG 694


>gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 748

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 387/747 (51%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GS
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEDG-----EIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ F
Sbjct: 299 PIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE QT AIL LRL  L  L   +++ E + L  E 
Sbjct: 412 ----------------------FNLSEAQTEAILNLRLRHLAKLEEHELQAEKSQLEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +       G+  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFICSF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGK 673

Query: 721 SVGVRGIS---LAKGDQVISMAIVLHA 744
              +  IS     +G+++++  +++  
Sbjct: 674 GNKIINISAQAAKEGNELLARLLLVKP 700


>gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
 gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
          Length = 777

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 254/825 (30%), Positives = 389/825 (47%), Gaps = 79/825 (9%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+E   +  D   E    S+++ D  + +YL YAI+V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+G++HPHG+ A YDAL R++QD++ R  LI+GQGNFGS
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++   T DF PNYDGS  EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT IP HNL EV   CVA++ NP ++L   + ++ GPDF TG   I     I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA- 297
            AYA GRGS+ +R    +E+ +  + Q+V+ E+P+  +   +LE+I EL   K       
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 298 -----------------DLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES R+    ++   R +  D    +N L   TSL++   
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    KP +  L+ IL+ +VA+R + V RR+K+ L +   R H+L G    + NL
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+  IR S +P  A   LM R                            L+E+Q   I
Sbjct: 421 DEVIETIRNSDDPRPA---LMAR--------------------------FDLTELQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L++RL +L  L    I  EL +   E  E   +L+    +   I  E+ +   +    RR
Sbjct: 452 LDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTRRIISEIEADAKQFGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I      + +   +V E + V VS  G++        R Q+  G   S +  +  D +
Sbjct: 512 TLIQAEQRAVAE-VKVVDEAVTVIVSQKGWL--------RVQKGHGLVLSALTFKPGDAL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   +   ++   S G  Y   V  LP G  +  G+ + + + L  G +    +   
Sbjct: 563 YATFECRSVDPLVVLGSDGRAYSMDVADLPGG--RGDGQPVTSFIELAPGTQALHYLA-- 618

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---- 693
                     ++  T  G      +SD +   R+GK  + L+  D +        +    
Sbjct: 619 ----GARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTLEDGDTLQRPLVLDTDADGS 674

Query: 694 --NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
               +   +  G+ + +P + ++      + G RGI+L   D   ++  V    A+ D  
Sbjct: 675 PVGRLATLSADGRLLLYPAAEVKTL----ARGGRGITLMALDAKETLQSVAQLAAERDAL 730

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +   K      R  +    + T+     +  G   E   +  +L 
Sbjct: 731 LVSGKGRGGTERSATLSAAQQTAYVGKRARRGRKLEVTFKPDRLS 775



 Score = 41.4 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 23/183 (12%)

Query: 735 VISMAIVLHADADYDERICY----MKHMSAQRRLISGDTEEITSLKNDSS------VEGN 784
           V+S       DA Y    C     +  + +  R  S D  ++   + D            
Sbjct: 550 VLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSMDVADLPGGRGDGQPVTSFIELAP 609

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            ++        +   +L  + +GFG  T   D     R+GK           E G  +  
Sbjct: 610 GTQALHYLAGARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTL------EDGDTLQR 663

Query: 845 FPVNDND-------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V D D       ++  +S  G L+  P  E++  +R  +G+ + +    E + SV ++
Sbjct: 664 PLVLDTDADGSPVGRLATLSADGRLLLYPAAEVKTLARGGRGITLMALDAKETLQSVAQL 723

Query: 898 RES 900
              
Sbjct: 724 AAE 726


>gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 748

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 391/747 (52%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++ +++GPD+PT A +I  +  I   Y  GRGS
Sbjct: 184 DIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E+      +IV++ +P+Q + + ++E++A  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEEG-----EIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D +++ L+  T L+  + VNM  +    KP    L+ IL  +++F
Sbjct: 299 PIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P   + ELM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEP---KAELMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++VQ  AIL LRL  L  L    ++ E + L  E 
Sbjct: 412 ----------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E   IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +        +  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L +G  +  ++       + +   V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPEGATVQQVLM------ANSETKVLMASDSGYGFICTF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALSKGK 673

Query: 721 SVGVRGISLAK---GDQVISMAIVLHA 744
              +  IS A    GD+ ++  +V+  
Sbjct: 674 GNKIINISAAAAKSGDEYLARLLVIKP 700



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E+  ++ ++ G         I          V+ +S   GD  ++ A         
Sbjct: 499 LTPTEDVTVILSEKGWVRCAKGHDID---------VQALSYRAGDDYLAHARGRSNQPVV 549

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                   +      L S  ++        +  EG   ++    +   E  +L  S+ G+
Sbjct: 550 FLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVL--MANSETKVLMASDSGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G   +  D    N++GK + +   +       L      ++N  ++ +S+ G ++  PV+
Sbjct: 608 GFICTFEDLVSRNKAGKAVISLTENAKVLPPQL---LENDENLSLVAMSNVGRMLVFPVS 664

Query: 869 EIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           E+   S+  KG  I +       + DE +  +  I+ +
Sbjct: 665 ELPALSKG-KGNKIINISAAAAKSGDEYLARLLVIKPT 701


>gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
 gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
          Length = 759

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/743 (31%), Positives = 389/743 (52%), Gaps = 62/743 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + +T   + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  EGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELGLSALSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL ++   T D++PN+DG+ +EPV+L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 SRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV   C  +ID+P  +L  LM  ++GPD+PT A +I   + IK  Y TGRGS   R
Sbjct: 190 HNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYETGRGSFKSR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E       +IV+T +P++V+   +L++IA+ +++K++  IADLRDESD +     
Sbjct: 250 AVYTVENG-----EIVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDESDHENPTRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I        + +++ L+  T L+    VN+  L    +P+   L+ IL  ++ +R + 
Sbjct: 305 VIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILNEWLVYRMKT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +   A+ ELM R        
Sbjct: 365 VRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTCDD---AKAELMSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS +Q  AILE++L +L  L    IR E+++L  E  +  
Sbjct: 414 ------------------FELSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +LSS  RL  ++K+E+ +   +    RR+ ++E      + +++ +  E + V +S  G
Sbjct: 456 RLLSSERRLNTLVKKEIQADALKYGDDRRSPLIERIEAKALTEKELMPSETVTVVLSTQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+        AQ         +  +  D         ++ S +F  + G  Y   V  L
Sbjct: 516 WVRSAKGLDVDAQ--------ALNYKSGDEFLTKAQGRSNQSCIFIDASGRAYSLDVHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L      NQ E +  +     D    ++   + ++ HG     K SD  
Sbjct: 568 P--SARSQGEPLTGR--FNQNENVPFVCALIGD----DDDRYLISSDHGYGFIAKFSDIN 619

Query: 667 QINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-- 722
             N++GK  + L    +++  +  T   ++  L  +  G+ + FP++++   +       
Sbjct: 620 SRNKNGKTLINLTPNAQLMPPKKMTAADDDWCLTISNEGRLLLFPVNSLPSLSKGKGNRM 679

Query: 723 -GVRGISLAKGDQVISMAIVLHA 744
             +      K ++ ++M  ++  
Sbjct: 680 LNIISAKATKREEFVTMLEIIPQ 702


>gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
 gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
          Length = 749

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/761 (31%), Positives = 387/761 (50%), Gaps = 67/761 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I          + ++S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVIAGP-----LSVETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  L++GQGN+GS 
Sbjct: 56  SELGLKAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSA 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L + A  LL +LG+ TVD++PN+DG+  EPVVL A+ PNVL+NG 
Sbjct: 116 DDPKSFAAMRYTESKLARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT++P HNL E+VD  V +++NP   +  L E ++GPD+PT + I+       
Sbjct: 176 TGIAVGMATDVPPHNLREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDLQ 235

Query: 240 A-YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           A Y +GRGS+ +R    +E        IVV  +PYQV+ + +LE+IA  ++ +++  ++D
Sbjct: 236 AMYQSGRGSVKMRASWSVEDG-----AIVVNALPYQVSGSRVLEQIAAQMQARKLPMVSD 290

Query: 299 LRDESDRQG--YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        + +++ L+  T L+  + VN+  +    +P    L 
Sbjct: 291 LRDESDHEHATRFVIVPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDGRPAVKALN 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L++   R HVL G  IA  N+DEV+RIIR    P+ A  
Sbjct: 351 VILGEWLRFRRTTVQRRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPA-- 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LS+VQ  AIL+L+L  L  L    IR 
Sbjct: 409 -LIAR--------------------------FGLSDVQAEAILDLKLRNLAKLEEMKIRG 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E  +    L S +R+  +IK+EL++V +     RR+ I   E      + +  
Sbjct: 442 EQDELAAERDKLELTLGSDARMKTLIKKELMAVAEVHGDERRSPITQREEARPFSETELA 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + + + +S +G++        RA +      + +  +  D         ++   + F 
Sbjct: 502 SSDPLTIVLSEMGWI--------RAAKGHDIDPTSLNYKSGDGFKLAARGKSNLPTVVFD 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ L   ++   G     ++   + +        + A+ 
Sbjct: 554 STGRAYSIASHALP--SARGQGEPLTGRINPPSGATFEGLLTGADSDK------FLLASD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL--TTKLGQCVRFPIS 711
            G     + +D    N++GK  + L     +L        + +L+   T LG+ + FP+S
Sbjct: 606 AGYGFVARFADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGRLLVFPLS 665

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            +   A       +G+ G   A  ++V+     + +D   +
Sbjct: 666 DLPEMARGKGNKIIGIPGPKAAAREEVVVGVCAMRSDDVLE 706


>gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
 gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
          Length = 748

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 391/747 (52%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++ +++GPD+PT A +I  +  I   Y  GRGS
Sbjct: 184 DIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E+      +IV++ +P+Q + + ++E++A  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEEG-----EIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D +++ L+  T L+  + VNM  +    KP    L+ IL  +++F
Sbjct: 299 PIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P   + ELM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEP---KAELMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++VQ  AIL LRL  L  L    ++ E + L  E 
Sbjct: 412 ----------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E   IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +        +  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L +G  +  ++       +     V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPEGAVVQQVLM------ASPETKVLMASDSGYGFICTF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
           +D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +   
Sbjct: 614 ADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGK 673

Query: 721 SVGVRGISLAK---GDQVISMAIVLHA 744
              +  IS A    GD+ ++  +V+  
Sbjct: 674 GNKIINISAAAAKSGDEYLARLLVIKP 700



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 27/221 (12%)

Query: 689 TCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVRG-ISLAKGDQVISMAIVLHAD 745
               E+  ++ ++ G  +C +     ++  + R   G            V+ +      D
Sbjct: 499 LTPTEDVTVILSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFL------D 552

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           +           + + R      T +IT  +     +          +   E  +L  S+
Sbjct: 553 STGRAYALDPTSLPSARSQGEPLTGKITLPEGAVVQQVL--------MASPETKVLMASD 604

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+G   +  D    N++GK + +   +       L      ++N  ++ +S+ G ++  
Sbjct: 605 SGYGFICTFADLVSRNKAGKAVISLTENAKVLPPQL---LENDENLSLVAMSNVGRMLVF 661

Query: 866 PVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           PV+E+   S+  KG  I +       + DE +  +  I+ +
Sbjct: 662 PVSELPQLSKG-KGNKIINISAAAAKSGDEYLARLLVIKPT 701


>gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
 gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
          Length = 749

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/735 (33%), Positives = 380/735 (51%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL++ ++GPDFPTG +I+  +  I +
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIAD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R   H E  +     IVVT+IP+ V K+ ++EKIAEL+ +K++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWHREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L++ T L+S  S+N  V + G  P+   L   L
Sbjct: 298 RDESAEDIRVVIEPKSRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ +   +   R  VL G  IA  N+D+V++IIR    P+ A     
Sbjct: 358 REWLDHLRDVLLRRSAHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LIKAFKLTEVQADAILNMRLRSLRKLEEMEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    +L S +R    + +++ +V+D          RRT   +         +E
Sbjct: 449 NLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKRRTVFADAPEHDLAALEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V VS  G+V        R  +   +  S +  + +D +   F+  T + +L
Sbjct: 509 SLVEREPVTVVVSDKGWV--------RTLKGHVEDLSNLSFKTDDKLGFAFLAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y   V +LP G  +  G+ +   + L Q   I ++        +      + 
Sbjct: 561 LFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQDAAIVSLFV------NTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   R GK  + ++  +E  ++ T   +   ++ T     + FP+
Sbjct: 613 ASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEAKAITTVAGDQVAVIGTNHKMVI-FPL 671

Query: 711 SAIRVFAGRNSVGVR 725
             +   A     GVR
Sbjct: 672 DQVPEMA--RGRGVR 684


>gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
 gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
          Length = 765

 Score =  492 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 378/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSD----TDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EP+VL +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV   C  ++D P  +L+ L++++  PD+PT A +I  +  I 
Sbjct: 177 TGIAVGMATDIPPHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADIH 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E+       IV+T +P+Q + A +LE+IA  +  K++  +AD
Sbjct: 237 KIYKTGRGSIKMRAVYCEEQGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVAD 291

Query: 299 LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R     A+ ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P   + 
Sbjct: 352 SILTEWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKP---KP 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            L+++Q  AILEL+L  L  L    IR 
Sbjct: 409 LLMER--------------------------FELTDIQAEAILELKLRHLAKLEEFKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +    L S  R+  ++K+E+    +     RR+ ++E      + ++D I
Sbjct: 443 EQDELAKERDKLEQTLGSDRRMSTLLKKEIQEAAEMYGDDRRSPVIERVEAKALSEKDLI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  R  D         ++   +F  
Sbjct: 503 PSESVTVVLSDKGWA--------RVGKGHDLDVEGLNYRAGDGYRASARGKSNQPAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    +L  G     ++         +   ++ A+ 
Sbjct: 555 SAGRAFATDAHSLP--SARSQGEPMTGRFNLTSGASFEHVVM------GEDAQVLLMASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + +     +LS         +  +  +  G+ + FP+ 
Sbjct: 607 AGYGFITDFKDLVSKNKNGKALVSVPKGGVLLSPIRVNDVASDYCMAISNEGRMLLFPLR 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +   ++ + +  V+   + 
Sbjct: 667 DLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSS 705



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 19/118 (16%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +    Q +L  S+ G+G  T   D    N++GK + +       + G L++   VN
Sbjct: 590 EHVVMGEDAQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVP-----KGGVLLSPIRVN 644

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESEI 902
           D  +D  + +S++G ++  P+ ++    +           K  +++S+   +++  E 
Sbjct: 645 DVASDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKIISIPGAKVQAREE 692


>gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
 gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
          Length = 752

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/796 (31%), Positives = 400/796 (50%), Gaps = 69/796 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M    I    +   G+  + +   ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MGNETIPP--QGPDGVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQ ++ R  L++GQGNFG+V
Sbjct: 59  RLLKLDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGNV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD L ++ +DFR  YDG  +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARLTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I NPD ++D L++ I+GPDFPTG +++     I+ 
Sbjct: 179 GIAVGMATSIPPHNAHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGS  +R    +E     +  +V+TEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 239 AYATGRGSFRVRAKWEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R   A +++  +++ T L++ FS+NM  L+G K P    +  +L
Sbjct: 299 RDESTEDIRVVLVPRSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR++Y L +   R  VL G  IA  NLDEV+RIIR   +   A+ EL+
Sbjct: 359 REWLDHRKEVLIRRSEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIREEDD---AKAELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                          T  L++VQ  AIL +RL  L  L   +IR E +
Sbjct: 416 R--------------------------TFSLTDVQAEAILNMRLRSLRKLEELEIRKEHD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDE 530
            L  E  E   +L S +R    I +E+  +            RRT   E          +
Sbjct: 450 KLTKEKDELTKLLGSDARQWTRISKEIAEISKAYGPETELGKRRTEQAEAPDHDLGDIQQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      S +  +  D +   F   T   +L
Sbjct: 510 AMIEKEPITVIISEKGWI--------RALKGHQSDLSTLSFKQGDALKLSFHAETTDKIL 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G  +      LP G  +  G+ +  ++ +++ + +                 ++ 
Sbjct: 562 VFSTGGKFFTLSAANLPGG--RGHGEPIRLMVEMDEAQDVVCAFVHKA------GRKLLI 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           ++           D +   R GK  + L +  E  ++      + + +  +  + + FP+
Sbjct: 614 SSNEARGFVVGEDDVVANTRKGKQVLNLTAPAE-ATICVEADGDHVAVIGQNRKLLVFPM 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + I         GVR      GD  I+   V   +         +  + +  R  +   E
Sbjct: 673 AQIAQMT--RGRGVRLQRYRDGD--IADVRVFKGEDG-------LTWVDSSGRSFNRSLE 721

Query: 771 EITSLKNDSSVEGNIS 786
           ++T  + D    G + 
Sbjct: 722 DLTDWRGDRGQAGRLP 737


>gi|154482536|ref|ZP_02024984.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
 gi|149736561|gb|EDM52447.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
          Length = 801

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 265/792 (33%), Positives = 421/792 (53%), Gaps = 82/792 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M Q+G+ ++K + K
Sbjct: 3   EQIIKTEYSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYAMDQLGLNYDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  +AQD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLAQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L+K    +   DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMATNIPT
Sbjct: 123 KLKKFTQDVYLADLDKDVVDFVPNFDETEKEPSVLPVRVPNILVNGAEGIAVGMATNIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD  +A +DN +I  + L++I+ GPDFPTG ++  ++ +K+ Y  G G + +RG
Sbjct: 183 HNLGEVVDAVIAYMDNNNITTEELLQIMPGPDFPTGGIVANKSDLKDIYENGTGKLKLRG 242

Query: 253 VSHIEKTSG-DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
               EK  G +++++V+TEIPY +        +  + +LV  K+  DI D+ + SD  G 
Sbjct: 243 KLEFEKGKGREKDKLVITEIPYTMIGAGIGKFISDVIDLVETKKTTDIVDISNGSDENGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I+K  V F+ E+
Sbjct: 303 RIVLELKKGADVEKLKNILYKKTKLEDTFGVNMLAIADGRPEVMGLKSIIKYNVDFQYEL 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LLNKA ++  +  GL  A   +D ++ IIR S + +  +  L+    +    K
Sbjct: 363 AQRKYTTLLNKALEQKEIKEGLIKATNIIDLIIEIIRGSQSQKQVKACLVHGKTDDIKFK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           +    I          G +  +E Q +AILELRL++L GL    ++ E   L  +I +  
Sbjct: 423 NPESEI--------LAGNLSFTERQAQAILELRLSKLIGLEILALQKEYEELMDKIGQYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +R  +   IK++L ++K E   PR+T I +G   + DE+  V +++V      GY 
Sbjct: 475 DILENRKTMTKTIKKDLKAIKKEYALPRKTLIEDGKEAVFDENAFVEQEVVFVQDKFGYS 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  + +             V ++  +    F      S+  F+  G V++ KV  +P 
Sbjct: 535 KLLDPAAFDRN-------IESVTKENKYY---FRCMNTDSICIFTDNGNVHQIKVSAIPT 584

Query: 609 GSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              + +G  + N+ +  +QGE I T++ F        +  ++F TK+G ++    ++F  
Sbjct: 585 KKVREKGIPIDNLGNYSSQGESIVTLVSF----DMIKDKKLLFTTKNGMIKLVDGNEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEN--------------------------------- 694
             ++  +A KL   DE++SV+     N                                 
Sbjct: 641 NRKT-MLATKLGKDDEVVSVKITRVSNKQISEEQVEEMPVMLTGGSDDFEPLDFEQMELF 699

Query: 695 -------------------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
                               ++L T+ G  +RFP+  +     + ++GV+GI L  GD V
Sbjct: 700 DTTASMDVGQEQELQYTREILVLQTEEGIFLRFPLKEVPEM-KKATLGVKGIKLNDGDFV 758

Query: 736 ISMAIVLHADAD 747
             + ++   D +
Sbjct: 759 SKVYLLDTGDNE 770



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 16/212 (7%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           C   + I + T  G   +  +SAI     R   G+   +L          + L +     
Sbjct: 559 CMNTDSICIFTDNGNVHQIKVSAIPTKKVRE-KGIPIDNLGNYSSQGESIVTLVSFDMIK 617

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           ++       +   +L+ G+  E       ++  G   E    ++         +SE+   
Sbjct: 618 DKKLLFTTKNGMIKLVDGNEFETNRKTMLATKLGKDDEVVSVKITRVSNK--QISEE--- 672

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI-------ILVSDKGTL 862
                 +  +    G         +  E+    A   V    ++       +L +++G  
Sbjct: 673 ---QVEEMPVMLTGGSDDFEPLDFEQMELFDTTASMDVGQEQELQYTREILVLQTEEGIF 729

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +R P+ E+    +AT GV        + V  V
Sbjct: 730 LRFPLKEVPEMKKATLGVKGIKLNDGDFVSKV 761



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 8/172 (4%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++        +   +++      +   G ++ +     D ++E    E +     +   
Sbjct: 504 TLIEDGKEAVFDENAFVEQEVVFVQDKFGYSKLLDPAAFDRNIESVTKENKYYFRCMNTD 563

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND---NDQIIL 855
            I   ++ G   +             KGI   ++   +  G  +      D   + +++ 
Sbjct: 564 SICIFTDNGNVHQIKVSAIPTKKVREKGIPIDNLGNYSSQGESIVTLVSFDMIKDKKLLF 623

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESEIVDE 905
            +  G +  V  NE    +R T   +     KD+ VVSV   R+   +I +E
Sbjct: 624 TTKNGMIKLVDGNEF-ETNRKTM--LATKLGKDDEVVSVKITRVSNKQISEE 672


>gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 898

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/734 (33%), Positives = 413/734 (56%), Gaps = 46/734 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  +++I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDASISIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H E     +  IVV EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQE-----KNNIVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A++ LDEV+++IR S N   A   L++           
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRIDAINNLVK----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q+ AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L  VK +    R++++ +    LD++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  ++         G+     +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIAN 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I       E  +S    +++  +K+G ++R ++SD    
Sbjct: 566 SKWKDQGVHINSVATTQPNETIINAFIIKEFINSTQ--HLLLVSKNGLIKRTQISDLETK 623

Query: 669 --NRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N+S KI MK+   D ++  +  + + +   + TK G  VR+ I  I V +   S GV+
Sbjct: 624 IFNKSFKI-MKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQST-ISKGVK 681

Query: 726 GISLAKGDQVISMA 739
             +L K D +IS  
Sbjct: 682 AANL-KDDYIISAL 694



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 102/267 (38%), Gaps = 12/267 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E +   +   + E        ++ +K G ++     D   +N++   +      D  +S 
Sbjct: 481 EDLVEDLDVDQKEVIIEKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWISQ 537

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KGDQVISMAIVLHA 744
             C+  + ++L +        P+  I   +     GV   S+A     + +I+  I+   
Sbjct: 538 GVCSNLDHLILVSDQANYYSIPLYKI-ANSKWKDQGVHINSVATTQPNETIINAFIIKEF 596

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   K+   +R  IS  +T+          +  + S      +  K  +   +
Sbjct: 597 INSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCII 656

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+  R +  D  + +   KG++A ++    +   +++   +++N  +++ ++K    
Sbjct: 657 TKNGYAVRYNIEDIPVQSTISKGVKAANL----KDDYIISALSLDNNKDVLIFTNKNNYK 712

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDER 890
           R+  N I I  R  KG+ I    K  +
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEKKKNK 739



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   I++   A+Y     Y    S  +          T+  N++ +   I     +E   
Sbjct: 543 LDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFI----IKEFIN 598

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q +L VS+ G  KRT   D      + K  +   +S  + +  + A    +      +
Sbjct: 599 STQHLLLVSKNGLIKRTQISDLETKIFN-KSFKIMKISDDDSL--VYADLISSKTSYCCI 655

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++  G  +R  + +I + S  +KGV   +  KD+ ++S
Sbjct: 656 ITKNGYAVRYNIEDIPVQSTISKGVKAANL-KDDYIIS 692


>gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
 gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
          Length = 749

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 383/758 (50%), Gaps = 65/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IHDVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    +L+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R   + E+ +     IVVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYMTGRGAFRTRAKWNQEEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L++ T L+S  S+N  V + G  P+   L   L
Sbjct: 298 RDESAEDIRVVIEPKSRNVDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A     
Sbjct: 358 REWLDHLRDVLLRRSAYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKAFKLTEVQAEAILNMRLRSLRKLEEMEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    +L S +R    + +++ +V+D          RRT   +         +E
Sbjct: 449 NLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKRRTVFADAPEHDLAALEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +   +  S +  +  D +   F   T + +L
Sbjct: 509 SLVEREPVTVVLSDKGWV--------RTLKGHVEDLSSLSFKTNDKLGFAFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y   V +LP G  +  G+ +   + + Q   I ++        +      + 
Sbjct: 561 LFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDMEQDAAIVSLFV------NTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   R GK  + ++  +E          + + +     + V FP+
Sbjct: 613 ASHEGQGFIVNEDDCVGTTRKGKQVLNVEMPNE-AKAIVTVAGDQVAVIGTNHKMVIFPL 671

Query: 711 SAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADAD 747
             +       + G RG+ L K  D  +S   V  + A 
Sbjct: 672 DQVPEM----ARG-RGVRLQKYKDAGLSDVAVFDSKAG 704


>gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
          Length = 751

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 368/742 (49%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD + +D V FR NYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD     L++ ++GPDFPTG VI+  R  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R   H E  +     + +TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRTRAKWHQEDGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDIRVVIEPKSRAVDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR  Y   +   R  VL G  IA  N+D+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLLRRCSYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+++Q  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKAFNLTDIQAEAILNMRLRSLRKLEEFEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    IL S +     + +++  V++          RRT   +         +E
Sbjct: 449 NLRAELKGINAILKSETEQWAKVAEQVRKVREMFGPKTALGKRRTMFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +      SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVISDKGWV--------RTLKGHVADLSGLTFKTDDKLGQAFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y   V +LP G  +  G+ +   + L+Q   I  +               + 
Sbjct: 561 LFATNGRFYALDVAKLPGG--RGHGEPIRMFIDLDQDAAIVALFV------HTGGRKFLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   R GK  + ++  +E  +V T +  + + +  +  + + F +
Sbjct: 613 ASHDGQGFIVNEDDCVGNTRKGKQILNVEMPNEARAVCTVSG-DSVAVIGENRKLLIFAL 671

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A     GVR      G
Sbjct: 672 DQVPEMA--RGRGVRLQKYKDG 691


>gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
 gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
          Length = 739

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 375/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP+   + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R +  +E     + +IV+TE+PYQV+ + ++ +IA+ +  K++  +AD+RDESD +    
Sbjct: 246 RSIYTVE-----KNEIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L K   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR E   L  +    
Sbjct: 407 ---------------LMQHFGIDEIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAVI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L++   L  +I  EL     +    RR+ IV     + + ++D +  E + V +S  
Sbjct: 452 REQLANPESLKSLIINELKEDAKKFGDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +      + +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + LS   G     ++   ED+++     ++ A+ +G   + + +  
Sbjct: 564 LP--SARGLGEPLSSKLSPASGVSFIQVLV--EDDANE----LLVASSNGYGFKTQATQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L +    Q   + + +  G+ +   ++ + V       G +
Sbjct: 616 DTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL--NKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L + +Q++SM  +   +
Sbjct: 674 LIQLDEKEQILSMTTLALDE 693



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G    +   E    E  +L  S  G+G +T +     + ++GK         
Sbjct: 575 SSKLSPASGVSFIQVLVEDDANE--LLVASSNGYGFKTQATQLDTNAKAGKAFLTV---- 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             E    + + P+     + ++S  G L+ + + E+ + ++  KG  +    + E+++S+
Sbjct: 629 -MEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVLNKG-KGNKLIQLDEKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLALDEII 695


>gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 748

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 387/747 (51%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GS
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      + +++ L+  T L+  + VNM  +    KP   TL  IL  ++ F
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKTLHTILTEWLVF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  + L+K  +R H+L GL IA  N+DE + IIR    P+TA   LM R    
Sbjct: 359 RRTTVTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTA---LMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AIL LRL  L  L   +++ E + L  E 
Sbjct: 412 ----------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLTLGSERRLNTLIKKEIQADAKVFASPRRSPLVERAEAKAISESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +       G+  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFICSF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGK 673

Query: 721 SVGVRGIS---LAKGDQVISMAIVLHA 744
              +  IS     +G+++++  +++  
Sbjct: 674 GNKIINISAQAAKEGNELLARLLLVKP 700


>gi|116074280|ref|ZP_01471542.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
 gi|116069585|gb|EAU75337.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
          Length = 824

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 283/830 (34%), Positives = 432/830 (52%), Gaps = 60/830 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVEPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H   LD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQALLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+ +I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVRKPDLSDDKLLALIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+    + +     +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPEKVLVDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ +L  V+ +I+ + +  +AR  LM        
Sbjct: 363 LTMIRRTTHALRKTEDRLEVVEGLITALDSLQRVIAMIQEAKDAASARASLMVH------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLTGL ++ +RNE   L +E + 
Sbjct: 417 --------------------LDLTERQADAVLAMPLRRLTGLEQESLRNEAQELRLERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L  R +LL  + QEL  +K    TPRRTR++EG   +  E    +           
Sbjct: 457 LQLLLQERDQLLDAMVQELKQLKKRFATPRRTRLIEGGDHLLAEKAANQRPNAELQRRQA 516

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
                       Q  G          G+      +   D       +  +     +L  +
Sbjct: 517 LGALPSDGRLLIQNDGQVKVVSPQLLGRLHLNEAVGLGDEPSPAQLILPIQPAPRLLVLT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFA 651
           + G +   + W      P    + L   L   +G+ + +++  P  +D S+   L +   
Sbjct: 577 ASGRMALLR-WEFAGQQPGGLERFLPTAL---EGDPVVSLLRLPAADDASTNTRLSLGLL 632

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI- 710
           +  G  +R  L D  +++      +KL     +LS   C     + L + +G+ +  P+ 
Sbjct: 633 STDGRFKRLPLDDVQELSGRAATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPVQ 692

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD----YDERICYMKHMSAQRRLIS 766
                  G+ + G   + +  G+ ++          +              +S+ RR   
Sbjct: 693 DDNLPLMGKLAQGPMTMRMLPGETLVGAVSQSAGGENLLVGSRNGALRRLSLSSLRRCKR 752

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
           GD  E+         +     +R          +  V+ KG   R  S +
Sbjct: 753 GDLGEMAITLQGKGNDA----DRLVSACTCADLVGVVTSKGRHGRILSAE 798



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 9/146 (6%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  ++   A ++    +    T+L+ D  V                  +  +S  G  K
Sbjct: 580 RMALLRWEFAGQQPGGLERFLPTALEGDPVVSLLRLPAADDASTNTRLSLGLLSTDGRFK 639

Query: 811 RTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           R    D + +S R      A  + K+ +  +L++     D   + L+SD G ++ +PV +
Sbjct: 640 RLPLDDVQELSGR------AATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPVQD 693

Query: 870 --IRIASRATKGVVIFSTAKDERVVS 893
             + +  +  +G +       E +V 
Sbjct: 694 DNLPLMGKLAQGPMTMRMLPGETLVG 719


>gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 739

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 375/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP+   + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R +  +E     + +IV+TE+PYQV+ + ++ +IA+ +  K++  +AD+RDESD +    
Sbjct: 246 RSIYSVE-----KNEIVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L K   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR E   L  +    
Sbjct: 407 ---------------LMQHFGIDEIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAVI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L++   L  +I  EL     +    RR+ IV     + + ++D +  E + V +S  
Sbjct: 452 REQLANPESLKNLIITELKEDAKKFGDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +      + +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + LS   G     ++   ED+++     ++ A+ +G   + + +  
Sbjct: 564 LP--SARGLGEPLSSKLSPASGVSFIQVLV--EDDANE----LLVASSNGYGFKTQATQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L +    Q   + + +  G+ +   ++ + V       G +
Sbjct: 616 DTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL--NKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L + +Q++SM  +   +
Sbjct: 674 LIQLDEKEQILSMTTLALDE 693



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G    +   E    E  +L  S  G+G +T +     + ++GK         
Sbjct: 575 SSKLSPASGVSFIQVLVEDDANE--LLVASSNGYGFKTQATQLDTNAKAGKAFLTV---- 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             E    + + P+     + ++S  G L+ + + E+ + ++  KG  +    + E+++S+
Sbjct: 629 -MEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVLNKG-KGNKLIQLDEKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLALDEII 695


>gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
 gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
          Length = 758

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 395/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SSEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV D  + +ID+P  +L  +M  ++GPD+PT A I+  +  ++  Y TGR
Sbjct: 182 ATDIPPHNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D ++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++E+Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  R+  ++K+E+ +  D+    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEKLLGSERRMNTLLKKEIQADADKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  + G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQQAVFLGNDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P  S +++G+ +   L++N G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSMP--SARSQGEPITGRLNINAGTSIRHVV-MGEEEQLW-----LIGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  N+SGK  + L +  E++S +T +    ++IL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEILTITNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++ +S  I L   + 
Sbjct: 672 GKGNKIINIPAAKAKEREEYVSHLISLPQGSS 703



 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  +EQ  L  S+ G+G      D    N+SGK +        N            
Sbjct: 588 RHVVMGEEEQLWLIGSDAGYGFVCKGSDLLSKNKSGKALVTL---PANSEVISPQTISNL 644

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           D D+I+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 645 DTDEILTITNQGRMLLFPIKDLPQLGKG-KGNKIINI 680


>gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
 gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
          Length = 747

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 383/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
 gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
          Length = 747

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/739 (32%), Positives = 383/739 (51%), Gaps = 66/739 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  II+      +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSNEIINY-----EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y A+  MAQD++ R  LI+GQGN+GS+
Sbjct: 56  SELGLNATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSL 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL K A  LL +L + TVDF+PN+DGS  EPV   +R P++L+NG  
Sbjct: 116 -EDDAAAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGST 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ +  V +++NP   L  L+ +++GPD+PT A +I  ++ I  
Sbjct: 175 GIAVGMATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAK 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  GRGSI +R V   E       +IV+  +P+Q + + ++ +IA+ +R K++  + D+
Sbjct: 235 IYEQGRGSIRMRAVWSKEDG-----EIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDI 289

Query: 300 RDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD +    ++ + R      D +++ L+  T L+  + VNM  +    KP    L  
Sbjct: 290 RDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHE 349

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +++FR   V RR    L+K  +R H+L GL IA  N+DEV+ IIR    P+     
Sbjct: 350 ILTEWLSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAV--- 406

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R                            LS++Q  AIL LRL  L  L   +++ E
Sbjct: 407 LMAR--------------------------FNLSDIQAEAILNLRLRHLAKLEEHELQAE 440

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIV 534
            N L  E  E   IL S  RL  +IK+E+ +       PRR+ +VE      + + D   
Sbjct: 441 KNQLESERDELRLILGSERRLNTLIKKEIQADAKTFADPRRSPLVERAEAKAISESDLTP 500

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            ED+ V +S  G+V        R  +       G+  R  D         ++  V+F  S
Sbjct: 501 TEDVTVILSEKGWV--------RCAKGHDIDVEGLSYRAGDGYLAHTRGRSNQPVVFLDS 552

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP  S +++G+ L   ++L +G  +  ++       +     V+ A+  
Sbjct: 553 TGRTYALDPTSLP--SARSQGEPLTGKITLPEGATVEQVLM------AAPETKVLMASDS 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISA 712
           G        D +  N++GK  + L    ++L+ +    E DI L   +  G+ + FP++ 
Sbjct: 605 GYGFICTFEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDISLVAMSSAGRMLVFPLAE 664

Query: 713 IRVFAGRNSVGVRGISLAK 731
           + + +     G + I+++ 
Sbjct: 665 LPILS--KGKGNKIINISA 681



 Score = 41.4 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 77/202 (38%), Gaps = 23/202 (11%)

Query: 689 TCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               E+  ++ ++ G  +C +     +   + R   G    +  + +Q      V+  D+
Sbjct: 498 LTPTEDVTVILSEKGWVRCAKGHDIDVEGLSYRAGDGYLAHTRGRSNQ-----PVVFLDS 552

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                      + + R      T +IT  +  +  +          +   E  +L  S+ 
Sbjct: 553 TGRTYALDPTSLPSARSQGEPLTGKITLPEGATVEQVL--------MAAPETKVLMASDS 604

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI--ILVSDKGTLIR 864
           G+G   +  D    N++GK + +       E   ++A   +++ + I  + +S  G ++ 
Sbjct: 605 GYGFICTFEDLVSRNKAGKAVISLT-----ENAKVLAPQLIDNEEDISLVAMSSAGRMLV 659

Query: 865 VPVNEIRIASRATKGVVIFSTA 886
            P+ E+ I S+  KG  I + +
Sbjct: 660 FPLAELPILSKG-KGNKIINIS 680


>gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
 gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
          Length = 770

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/815 (30%), Positives = 374/815 (45%), Gaps = 76/815 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  +    +    + +    + +YL YA++V+ GRA+PD+ DG KPV RRILF M +MG+
Sbjct: 1   MPENTASAEHSDILLLAPYAERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAMKEMGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             N K VK AR+ GE++GKYHPHG+A+ YDA+ RMAQD++LR  LI+G GNFGS DGD  
Sbjct: 61  AANSKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   A  LL +L + TVDF PNYDG+F+EPV L AR P VL+NG  GIAVG
Sbjct: 121 AAMRYTEARLTPIAELLLSELHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGASGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATG 244
           MAT IP HNLGEV    VA++  P +    LME    PDF  G  I+     +   Y TG
Sbjct: 181 MATEIPPHNLGEVTAAAVALLKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQLYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD--------- 295
           +GSI +R    IEK +  + ++V+TE+P   +   +L +I E    K             
Sbjct: 241 KGSIRVRARYEIEKLARGQWRLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQLNQDQL 300

Query: 296 ---------IADLRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSVNMVAL 344
                    I  +RDESD +    ++   + +    D  +N L   T L+     N+V +
Sbjct: 301 NTKKLMLELIDKVRDESDGEHPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPANLVMI 360

Query: 345 N-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
               +P +  L  IL+ ++ FR   V RR ++ L +   R H+L G   A  ++DEV+R+
Sbjct: 361 GLDNRPAQKNLKTILQEWLDFRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHIDEVIRV 420

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR +  P+                                     LSE+Q   ILE+RL 
Sbjct: 421 IREADEPKP-----------------------------ELMAAFGLSEIQAEDILEIRLR 451

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           +L  L    +  EL  L  E     ++L+       +I +E+ +   +   PRRT +V  
Sbjct: 452 QLARLEGFKLEQELADLREEEGYLKNLLADEGAKKKLIIKEMQADAKQFGDPRRT-LVAE 510

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
                       E + + +S  G++        R++   G   S    ++ D +      
Sbjct: 511 AERAALTHTTADEPVTLILSRQGWI--------RSRAGHGLDLSATAFKEGDELQQTLET 562

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
            T   V+   +LG  Y      +P G  +  G  L ++L L  G  +  ++     E   
Sbjct: 563 RTVDPVVVLDTLGRSYTIDPAEIPGG--RGDGVPLASLLELQPGASVLAMLAGQPQE--- 617

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDIL 697
              + + A   G     KL D +   ++GK  +KL++ + +L  +          +  ++
Sbjct: 618 ---HYLLAGSGGYGFIAKLGDLVGRVKAGKEVVKLEAGETLLMPQPVHQSALINPDCRLV 674

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +     + FPI  ++V A     G++ +SL   D +   A+V   D     R      
Sbjct: 675 LASAEKHLLAFPIGELKVMA--KGRGLQLMSLRGNDTLQLTALVSTPDFWVCSRGKRGAA 732

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
              + R+   + +     +        IS    QE
Sbjct: 733 HRERLRVQDIEGKRGRKGRMLDVSGSLISLSSTQE 767


>gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1]
 gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 744

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/745 (33%), Positives = 382/745 (51%), Gaps = 67/745 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  ++ D      I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MTKPAVTGD------IRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++ +  + KCAR+ G+V+GKYHPHG+ A+YD L R+AQD+++R  L+EGQGNFG++
Sbjct: 55  RQLKLDPSGGFKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L + A  L++ L +D+VDFRP YDG+ +EPVV+ + +PN+L NG  
Sbjct: 115 DGDNAAAMRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT+IP HN+GE+ D    +I  PD D+D L+  + GPDFPTG V++     I  
Sbjct: 175 GIAVGMATSIPPHNIGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G+  +R    +EK S    QIV+TEIPYQV KA ++EKIAEL+ EK++  +AD+
Sbjct: 235 AYRTGKGAFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADI 294

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTL 354
           RDES      V+    R   A++++ QL+R T L+S FS+NM  L         P    L
Sbjct: 295 RDESAEDIRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMNL 354

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+AF+  R  V+ RR ++ L K   R  VL G     A+LD+V+RIIRF+  P   +
Sbjct: 355 KEVLRAFLDHRMVVLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEP---K 411

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL++                          T  LSEVQ  AIL +RL  L  L   +I+
Sbjct: 412 AELIK--------------------------TFKLSEVQAEAILNMRLRSLNKLQELEIK 445

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD--M 527
            E   L  E  +   +L+   R    I  +    +           RRT + +      +
Sbjct: 446 TEHAELSAEKADLEALLADEPRRWAAIAAQNDETRKAFGGATALGKRRTELGDAPSAVVV 505

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E  + RE + + +S  G++        RA +        +  ++ D +  L    T  
Sbjct: 506 PIEAYVEREAITMVLSEKGWI--------RALKGHSDAPEALKFKEGDQLGHLLKAWTTD 557

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F++ G  Y     +LP G  +  G+ L  ++ L     I  +M             
Sbjct: 558 KILVFATDGRFYTIGGDKLPSG--RGHGEPLRLMIDLAGDVDIAAVMVHK------PGRK 609

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ AT        + ++ +   R+GK+ +     ++        + + + +  +  + + 
Sbjct: 610 LLVATNTDRGFVVEENEVLAQTRAGKMVLNCADGEK-AKFCLPFEGDAVAVIGENRKLLV 668

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG 732
           F    I V       GV       G
Sbjct: 669 FMAEEIPVLT--RGRGVILQKYRDG 691


>gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 751

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 237/725 (32%), Positives = 379/725 (52%), Gaps = 58/725 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVDF+PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ EV D  V ++DNP + LD ++ II+GPDFPT A I+  +  I+  Y TGRGSI +R
Sbjct: 187 HNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    +
Sbjct: 247 ATWHKEDG-----EIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ +L  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLTEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   ++ LM R        
Sbjct: 362 VTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEP---KQVLMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L    ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + +    E + V +S +G
Sbjct: 453 LILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +      +G+  +  D         ++  V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPAGLSYKAGDKYLAHACGKSNQPVIFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++  PE +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLTLPAGATIEQVIMEPEKQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  E  ++   +L+  T  G+ + FP+  +   +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPEKLSESASLLVSLTSAGRMLIFPVRDLPALSKGKGNKII 676

Query: 726 GISLA 730
            I  A
Sbjct: 677 SIPAA 681


>gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 733

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 250/737 (33%), Positives = 376/737 (51%), Gaps = 60/737 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H       E   I    + + +   YL YA++ I  RA+PD+RDG KPVHRRIL+ M
Sbjct: 1   MTIHTPPP---EGGRIVDEPMGEALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QM +       KCA++ GEVMG YHPHG+A+IYDAL R+AQD++ R  L++GQGNFG++
Sbjct: 58  HQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTEC+L  A+  L++ + +D+VDFRP YD   +EP VL A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTECKLTAASVLLMEGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+GE++D C+A++D P+     L EI+ GPDFPTG V + G   I +
Sbjct: 178 GIAVGMATSIPPHNVGELIDACLALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R     E       QIV+TE+PYQV K+ ++E +AEL+ +K+   + D+
Sbjct: 238 AYETGRGGVRLRARWEREPLERGGYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGIL 358
           RDES      V+    R   AD ++  L+R + L+  F +NM  L+    P    L   L
Sbjct: 298 RDESAEDIRVVIDPKSRNIDADSLMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKACL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+ + + +   R H+L GL I   NLDEV+RI+R    P+     L+
Sbjct: 358 QAFLDHRREVLNRRSAWRIERVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAV---LI 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            LSE Q   IL+ RL +L  +    I NE  
Sbjct: 415 AR--------------------------FGLSETQADFILDTRLRQLARIEEMTIENEYK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVR 535
           +L  E+     + SS ++    I QEL + +  L +PRRT I E +     +  E  I R
Sbjct: 449 ALSEELASLQSLTSSPAKQWKKIGQELAATRKALISPRRTTIAEAVDASAFVPAEAFIPR 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G++        RA +   +  S +  ++ D +  L    T   +L  +S 
Sbjct: 509 EAITVILSERGWI--------RAVKGKVEDPSELKFKEGDALGFLVPAFTTDKLLVAASD 560

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+     +L   S +  G+ L  ++ L +   I  ++             ++ A+K G
Sbjct: 561 GRVFTVGADKL--ASGRGHGEPLRLMVELEESAGIVAVLA------HQPGAKLLIASKAG 612

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
                   + +   R GK  +     D + ++      + ++   +  + + F    +  
Sbjct: 613 YGFIAPEDELLAQKRGGKQVLN---GDLLAAIRVT--GDHVVTIGENLKTLIFKADELPE 667

Query: 716 FAGRNSVGVRGISLAKG 732
                  GV+  S  +G
Sbjct: 668 MG--RGKGVKLQSFKQG 682



 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  S+ G+G      +     R GK +           G L+A   V   D ++ + + 
Sbjct: 605 LLIASKAGYGFIAPEDELLAQKRGGKQVL---------NGDLLAAIRVT-GDHVVTIGEN 654

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              +    +E+    R  KGV + S  + 
Sbjct: 655 LKTLIFKADELPEMGRG-KGVKLQSFKQG 682


>gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 898

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/739 (32%), Positives = 412/739 (55%), Gaps = 46/739 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H E     +  IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQE-----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A++ LDEV+++IR S N   A   L+            
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVI----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q  AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L   K +    R++++ +    LD++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNSLVLDNEIISRLEEAKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  ++         G+     +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKIST 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I   +   E  +S    +++  +K+G ++R ++SD    
Sbjct: 566 SKWKEQGVHINSVATTQPNETIINALVIKEFINSTQ--HLLLVSKNGLIKRTQISDLETK 623

Query: 669 --NRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N+S KI MK+   D ++  +   ++ +   + TK G  VR+ I  I V +   S GV+
Sbjct: 624 IFNKSFKI-MKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQST-ISKGVK 681

Query: 726 GISLAKGDQVISMAIVLHA 744
             +L K D +IS   + + 
Sbjct: 682 AANL-KDDYIISALSLQNN 699



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 101/267 (37%), Gaps = 12/267 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E +   +   + E        ++ +K G ++     D   +N++   +      D  +S 
Sbjct: 481 EDLVEDLDVDQKEVIIEKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWISQ 537

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KGDQVISMAIVLHA 744
             C+  + ++L +        P+  I   +     GV   S+A     + +I+  ++   
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKIST-SKWKEQGVHINSVATTQPNETIINALVIKEF 596

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   K+   +R  IS  +T+          +  + S      +  K  +   +
Sbjct: 597 INSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCII 656

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+  R +  D  + +   KG++A ++    +   +++   + +N  +++ ++K    
Sbjct: 657 TKNGYAVRYNIEDIPVQSTISKGVKAANL----KDDYIISALSLQNNKDVLIFTNKNNYK 712

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDER 890
           R+  N I I  R  KG+ I    K  +
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEKKKNK 739



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   I++   A+Y     Y    S  +          T+  N++ +   +     +E   
Sbjct: 543 LDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALV----IKEFIN 598

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q +L VS+ G  KRT   D      + K  +   +S  + +  + A    +      +
Sbjct: 599 STQHLLLVSKNGLIKRTQISDLETKIFN-KSFKIMKISDDDSL--VYADLISSKTSYCCI 655

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++  G  +R  + +I + S  +KGV   +  KD+ ++S
Sbjct: 656 ITKNGYAVRYNIEDIPVQSTISKGVKAANL-KDDYIIS 692



 Score = 37.6 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
           +I +    +  +    +      ++  GY  R  +     Q    KG     ++D D++ 
Sbjct: 633 KISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKD-DYII 691

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
               +  +  VL F++     +     +PI     +G  ++     N+ E+I       +
Sbjct: 692 SALSLQNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILVEKKKNK-EQIIFGFAIND 750

Query: 639 DES 641
             S
Sbjct: 751 QMS 753


>gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113]
 gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113]
          Length = 747

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/794 (30%), Positives = 392/794 (49%), Gaps = 74/794 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 8   DIEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYTE 
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEA 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL ++G+ TV++ PN+DG+ QEP +L AR P+VL+NG  GIAVGMAT+IP H
Sbjct: 128 RLAPFAELLLAEVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL EV   C+ ++  P+  +  L E + GPD+PT A +I     +   Y TG+GS+ +R 
Sbjct: 188 NLHEVAAACLHLLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRA 247

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E+ +     IVV  +P+QV+ A +LE+IA+ ++ K++  +ADLRDESD +    ++
Sbjct: 248 RYRVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLV 302

Query: 313 ELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
            +      +V  +++ L+  T L+  + VN   +    +P+   L  +L  +  FR   +
Sbjct: 303 LVPHARRIEVETVMSHLFATTDLERSYRVNFNVIGLDGRPQVKNLRDLLGEWFHFRIGTL 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +Y L K  DR  VL GL IA  N+DEVV IIR    P+     L+ R         
Sbjct: 363 RRRFQYRLEKVEDRLQVLAGLLIAYLNIDEVVAIIRNEEVPKPV---LIAR--------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q  AILEL+L  L  L    I+ E  +L  E K    
Sbjct: 411 -----------------FKLSDRQAEAILELKLRYLARLEETKIQAENKALAAERKRLEK 453

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGY 547
           +L S SR+  +++QELL+  ++    RR+ IVE      ++ +  +  E + V +S  G+
Sbjct: 454 MLGSESRIKDLLRQELLADTEKFGDARRSPIVERPSATALDQQSLLPAELITVVLSEKGW 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           V        RA +      + +  R  D         ++   +F  S G  Y      LP
Sbjct: 514 V--------RAAKSQDVNPAALSYRTGDSYRASARGRSNQPAVFLDSTGRSYTLPAHGLP 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S + +G+ L   L +  G     I+    +E      + + A+  G     +      
Sbjct: 566 --SARGQGEPLSGHLQVAPGAEFVAILLAEPEE------FYLMASNMGYGFLCQARHLYT 617

Query: 668 INRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            NR+GK  + + +  + L        + + + + T +G+ + FP+  +   A     GV+
Sbjct: 618 KNRAGKAVLNVSAGAKALPPVPVVDRELDQVAVATNVGRLLLFPLRDLPFIA--RGKGVK 675

Query: 726 GIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            I+      A+G + +    V+               + A RR ++  +E++   + + +
Sbjct: 676 LINISSTRFAQGQEAVRALAVISQGG--------ALQVFAGRRHLTLKSEDLEPYQGERA 727

Query: 781 VEGNISEERCQELK 794
             G       Q+++
Sbjct: 728 RRGLTLPRGFQQVE 741



 Score = 41.8 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+F L  S  G+G    +      NR+GK +   +VS   +    V V    + DQ
Sbjct: 591 LAEPEEFYLMASNMGYGFLCQARHLYTKNRAGKAV--LNVSAGAKALPPVPVVD-RELDQ 647

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ERVVSVERIR 898
           + + ++ G L+  P+ ++   +R  KGV + + +        E V ++  I 
Sbjct: 648 VAVATNVGRLLLFPLRDLPFIARG-KGVKLINISSTRFAQGQEAVRALAVIS 698


>gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810]
          Length = 747

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 385/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D +  E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMMPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
 gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
          Length = 747

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 384/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 747

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 368/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 NIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 HLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSQKGWV--------RAAKGHEVDPAGMSYRDGDGLLTAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S        +   F    S+ N    V A+ 
Sbjct: 555 SDGRAYSTAVHTLP--SARGNGEPLTGRFSP------ASCAAFQVMASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 DVPELDKGKGNKIIEIPKAK 686


>gi|310287731|ref|YP_003938989.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309251667|gb|ADO53415.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 890

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 285/945 (30%), Positives = 446/945 (47%), Gaps = 132/945 (13%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H      + ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   TTHQAYDPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G +I+GR GI+ AY
Sbjct: 185 IAVGMATNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIGRNGIRGAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG++  R ++H E  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D
Sbjct: 245 ETGRGTLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAID 304

Query: 302 ESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR    R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +L+ 
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPHTMGLKEMLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+  L+  
Sbjct: 365 WIDHRRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIA- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L +VQ + IL+LRL RLT + R ++  E + L
Sbjct: 424 -------------------------VFDLDDVQAQYILDLRLRRLTRMSRIELEAERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------ 534
              I+E   IL+S   L  ++  E+     E  TPRRT +++   D              
Sbjct: 459 KRRIEELERILASAQELDRVVVDEMDQAVAEYGTPRRTVLLDEAEDGTLTPVTPHGDDSV 518

Query: 535 -------------------------------------------REDMVVTVSHLGYVKRV 551
                                                       E   V +S  G + R 
Sbjct: 519 NAAAMKAAAAATTLSSAEADVTAAAAARKAGEDAAAVAALQIDDEPCTVMLSASGTIARS 578

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--IG 609
             +   A     +  S    +D D +  +F  +T +S    +S G +    V  LP    
Sbjct: 579 TPAALDAWES--RSTSDERTKD-DHIVSIFRTTTRSSYGLVTSAGRLVLAHVVELPALAA 635

Query: 610 SPQ---ARGKALINILSLN------QGERITTIMPFPE-DESSWNNLYVVFATKHGNVRR 659
           SPQ   A G     ++ +        GE +   +P  + D+       +   T+ G V+R
Sbjct: 636 SPQTNVAGGIPADELIGMTESTDPIPGEHVVAAIPMDQRDDDGPTPAPLAIGTRAGVVKR 695

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   ++    I   L   D +L       E+ ++        + F    +R   GR
Sbjct: 696 WNREAPTTMDSWSVID--LKDGDSVLFAADAADEDRLVFIASDSSLLTFDAGNVRP-QGR 752

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI LA+G   I+  +V         +I +           +     +T   +  
Sbjct: 753 TAGGMAGIRLAEGCTAITFNVVPAG------KIAWTYEEGDNGMFSASGAVVLTVAGDKD 806

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI- 838
           ++ G                    +E G  K T    +    R   G+R+    K     
Sbjct: 807 ALPG--------------------TENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNTL 846

Query: 839 -GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             A V ++P      +   ++ G+ + +P  ++R   R   GV +
Sbjct: 847 IFARVGMYP------LHASTEGGSPVELPKPDMR---RDASGVDL 882


>gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica]
          Length = 764

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 239/818 (29%), Positives = 394/818 (48%), Gaps = 75/818 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSD----TDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EP+VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNGV 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV   C  ++D P  +LD L+E++  PD+PT A +I  +  I 
Sbjct: 177 TGIAVGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIH 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E        IV+T +P+Q + A +LE+IA  +  K++  +AD
Sbjct: 237 KIYKTGRGSIKMRAVYTEEHGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVAD 291

Query: 299 LRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R     A+ ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR ++ L+K   R H+L GL  A  N+DEV+ IIR    P+    
Sbjct: 352 SILSEWLTFRRETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            L++ Q  AILEL+L  L  L    IR 
Sbjct: 410 -LMER--------------------------FDLTDTQAEAILELKLRHLAKLEEFKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +    L S  R+  ++K+E+    D     RR+ ++E      + ++D I
Sbjct: 443 EQDELAKERDKLEQTLGSDRRMSTLLKKEIQEAADMYGDDRRSPVIERVEAKALSEKDLI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  R  D         ++   +F  
Sbjct: 503 PSESVTVVLSDKGWA--------RVGKGHDIDVEGLNYRAGDEYKASAKGKSNQPAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    +L  G     ++         +N  ++ A+ 
Sbjct: 555 SAGRAFATDAHSLP--SARSQGEPMTGRFNLTTGANFEHVVM------GEDNQVLLMASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + +     +LS         +  +  +  G+ + FP+ 
Sbjct: 607 AGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVATDYCMAISNEGRMLLFPLR 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD---------YDERICYMKHMS 759
            +          +  I    +   ++ + +  V+   +             +   ++H  
Sbjct: 667 DLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLHAGKRKLTLKPSDLEHYH 726

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            +R              +++ VE   ++E+  +   +E
Sbjct: 727 GERGRRGNKLPRGLQRVDEAVVEFTPADEQSDDTLAEE 764



 Score = 44.9 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 19/121 (15%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +      +    Q +L  S+ G+G  T   D    N++GK + +       + G L++  
Sbjct: 587 ANFEHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVP-----KGGILLSPI 641

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESE 901
            VND   D  + +S++G ++  P+ ++    +           K  +++S+   +++  E
Sbjct: 642 RVNDVATDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKIISIPGAKVQARE 691

Query: 902 I 902
            
Sbjct: 692 E 692


>gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
 gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
          Length = 765

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/818 (29%), Positives = 393/818 (48%), Gaps = 75/818 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSD----TDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV   C  ++D P  +LD L+E++  PD+PT A +I  +  I 
Sbjct: 177 TGIAVGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIH 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E+       IV+T +P+Q +   +LE+IA  +  K++  IAD
Sbjct: 237 KIYKTGRGSIKMRAVYSEEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       A+ ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P   + 
Sbjct: 352 SILSEWLIFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKP---KP 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LMQR                            L+++Q  AILEL+L  L  L    IR 
Sbjct: 409 ILMQR--------------------------FDLTDIQAEAILELKLRHLAKLEEFKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +    L S  R+  ++K+E+    +     RR+ ++E      + ++D I
Sbjct: 443 EQDELAKERDKLELTLGSDRRMSTLLKKEIQEAAEMYGDDRRSPVIERSEAKALNEKDLI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+ +        AQ        G+  R  D         ++   +F  
Sbjct: 503 PSESVTVVLSDKGWARVGKGHDLDAQ--------GLSYRSGDAYRASARGKSNQPAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    +L  G     ++       + ++  ++ A+ 
Sbjct: 555 SAGRAFATDAHSLP--SARSQGEPMTGRFNLTTGANFEHVVM------AEDSQVLLMASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + +     +L     +    +  +  +  G+ + FP+ 
Sbjct: 607 AGYGFITDFKDLVSKNKNGKALVSVPKGGILLKPIRVSDVASDYCMAISNEGRMLLFPLR 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD---------YDERICYMKHMS 759
            +          +  I    +   ++ + +  V+   +             +   ++H  
Sbjct: 667 DLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPLGSSVTLHAGKRKLTLKPTDLEHYH 726

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            +R              +++ VE    +E   E    E
Sbjct: 727 GERGRRGNKLPRGLQRVDEAVVELTPQDEEPVESTADE 764



 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 19/121 (15%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +      +    Q +L  S+ G+G  T   D    N++GK + +       + G L+   
Sbjct: 587 ANFEHVVMAEDSQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVP-----KGGILLKPI 641

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESE 901
            V+D  +D  + +S++G ++  P+ ++    +           K  +++S+   +++  E
Sbjct: 642 RVSDVASDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKIISIPGAKVQARE 691

Query: 902 I 902
            
Sbjct: 692 E 692


>gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
 gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
          Length = 752

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/740 (31%), Positives = 377/740 (50%), Gaps = 69/740 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI    + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V +IDNP   LD L+ +++GPD+PT A I+  +  I+  Y  GRGS+ +R
Sbjct: 187 HNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRGSVRMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V   E       +IV+T +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 AVWKKEDG-----EIVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHESPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +    KP   +L+ IL  ++ FR   
Sbjct: 302 VIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKSLVEILTEWLQFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL IA  N+DEV++IIR    P   ++ L+ R        
Sbjct: 362 VTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIRNEDEP---KQVLIAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL LRL  L  L   +++ E + L  E     
Sbjct: 411 ------------------FNLTDEQAEAILNLRLRHLAKLEEHELQAEKDRLEEERDSLQ 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
             L S  RL G+IK+E+        +PR + +VE      + + D    E + V +S +G
Sbjct: 453 LTLGSERRLNGLIKKEIQQDAKTYTSPRLSPLVERAEAKAISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+         Q         +  +  D         ++ + +F  S G  Y      L
Sbjct: 513 WVRCAKGHDIDVQN--------ISYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  +  ++   E++       ++ A+  G     K  D +
Sbjct: 565 P--SARSQGEPLTGKLTLPAGASVEQVLIETENQP------LLMASDAGYGFICKFEDLV 616

Query: 667 QINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L     +L   +   +   ++  T  G+ + FP   +   A        
Sbjct: 617 ARNKAGKALISLPENARVLPPLKLTNETALLVALTSAGRMLIFPAKDLPSLAK------- 669

Query: 726 GISLAKGDQVISMAIVLHAD 745
                KG++++++  V   D
Sbjct: 670 ----GKGNKIVTIPAVNAKD 685


>gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21]
          Length = 747

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 233/725 (32%), Positives = 373/725 (51%), Gaps = 58/725 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  +  I+  Y  GRGSI +R
Sbjct: 187 HNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDP---KTELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + +    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESEMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLNYKAGDSYRAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMAGEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVIAITSAGRMLIFPAQDLPVLSKGKGNKII 676

Query: 726 GISLA 730
            I  A
Sbjct: 677 TIPAA 681


>gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 898

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 242/739 (32%), Positives = 412/739 (55%), Gaps = 46/739 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H E     +  IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQE-----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A++ LDEV+++IR S N   A   L+            
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVI----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q  AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L   K +    R++++ +    LD++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNSLVLDNEIISRLEEAKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  ++         G+     +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKIST 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I   +   E  +S    +++  +K+G ++R ++SD    
Sbjct: 566 SKWKEQGVHINSVATTQPNETIINALVIKEFINSTQ--HLLLVSKNGLIKRTQISDLETK 623

Query: 669 --NRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N+S KI MK+   D ++  +   ++ +   + TK G  VR+ I  I V +   S GV+
Sbjct: 624 IFNKSFKI-MKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQST-ISKGVK 681

Query: 726 GISLAKGDQVISMAIVLHA 744
             +L K D +IS   + + 
Sbjct: 682 AANL-KDDYIISALSLQNN 699



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 101/267 (37%), Gaps = 12/267 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E +   +   + E        ++ +K G ++     D   +N++   +      D  +S 
Sbjct: 481 EDLVEDLDVDQKEVIIEKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWISQ 537

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KGDQVISMAIVLHA 744
             C+  + ++L +        P+  I   +     GV   S+A     + +I+  ++   
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKIST-SKWKEQGVHINSVATTQPNETIINALVIKEF 596

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   K+   +R  IS  +T+          +  + S      +  K  +   +
Sbjct: 597 INSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCII 656

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+  R +  D  + +   KG++A ++    +   +++   + +N  +++ ++K    
Sbjct: 657 TKNGYAVRYNIEDIPVQSTISKGVKAANL----KDDYIISALSLQNNKDVLIFTNKNNYK 712

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDER 890
           R+  N I I  R  KG+ I    K  +
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEKKKNK 739



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   I++   A+Y     Y    S  +          T+  N++ +   +     +E   
Sbjct: 543 LDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALV----IKEFIN 598

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q +L VS+ G  KRT   D      + K  +   +S  + +  + A    +      +
Sbjct: 599 STQHLLLVSKNGLIKRTQISDLETKIFN-KSFKIMKISDDDSL--VYADLISSKTSYCCI 655

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++  G  +R  + +I + S  +KGV   +  KD+ ++S
Sbjct: 656 ITKNGYAVRYNIEDIPVQSTISKGVKAANL-KDDYIIS 692



 Score = 37.6 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 2/123 (1%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
           +I +    +  +    +      ++  GY  R  +     Q    KG     ++D D++ 
Sbjct: 633 KISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANLKD-DYII 691

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
               +  +  VL F++     +     +PI     +G  ++     N+ E+I       +
Sbjct: 692 SALSLQNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILVEKKKNK-EQIIFGFAIND 750

Query: 639 DES 641
             S
Sbjct: 751 QMS 753


>gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
 gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
          Length = 747

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 241/736 (32%), Positives = 380/736 (51%), Gaps = 64/736 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  II+      +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSNEIINY-----EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y A+  MAQD++ R  LI+GQGN+GS+
Sbjct: 56  SELGLNATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSL 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL K A  LL +L + TVDF+PN+DGS  EPV   +R P++L+NG  
Sbjct: 116 -EDDAAAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGST 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ +  V +++NP   L  L+ +++GPD+PT A +I  ++ I  
Sbjct: 175 GIAVGMATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAK 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  GRGSI +R V   E       +IV+  +P+Q + + ++ +IA+ +R K++  + D+
Sbjct: 235 IYEQGRGSIRMRAVWSKEDG-----EIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDI 289

Query: 300 RDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD +    ++ + R      D +++ L+  T L+  + VNM  +    KP    L  
Sbjct: 290 RDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHD 349

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  +++FR   V RR    L+K  +R H+L GL IA  N+DEV+ IIR    P+     
Sbjct: 350 ILTEWLSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAV--- 406

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R                            LS++Q  AIL LRL  L  L   +++ E
Sbjct: 407 LMAR--------------------------FNLSDIQAEAILNLRLRHLAKLEEHELQAE 440

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIV 534
            N L  E  E   IL S  RL  +IK+E+ +       PRR+ +VE      + + D   
Sbjct: 441 KNQLESERDELRLILGSERRLNTLIKKEIQADAKTFADPRRSPLVERAEAKAISESDLTP 500

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            ED+ V +S  G+V        R  +       G+  R  D         ++  V+F  S
Sbjct: 501 TEDVTVILSEKGWV--------RCAKGHDIDVEGLSYRAGDGYLAHARGRSNQPVVFLDS 552

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP  S +++G+ L   ++L +G  +  ++       +     V+ A+  
Sbjct: 553 TGRAYALDPTSLP--SARSQGEPLTGKITLPEGAIVEQVLM------AAPETKVLMASDS 604

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISA 712
           G        D +  N++GK  + L    ++L+ +    E D+ L   +  G+ + FPI+ 
Sbjct: 605 GYGFICTFDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVSLVAMSSAGRMLVFPIAE 664

Query: 713 IRVFAGRNSVGVRGIS 728
           + + +      +  IS
Sbjct: 665 LPILSKGKGNKIINIS 680



 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 19/200 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E+  ++ ++ G         I          V G+S   GD  ++ A         
Sbjct: 498 LTPTEDVTVILSEKGWVRCAKGHDID---------VEGLSYRAGDGYLAHARGRSNQPVV 548

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                   +      L S  ++        +  EG I E+    +   E  +L  S+ G+
Sbjct: 549 FLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAIVEQVL--MAAPETKVLMASDSGY 606

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTLIRVP 866
           G   +  D    N++GK + +       E   ++A   +++ +   ++ +S  G ++  P
Sbjct: 607 GFICTFDDLVSRNKAGKAVISLT-----ENAKVLAPQLIDNEEDVSLVAMSSAGRMLVFP 661

Query: 867 VNEIRIASRATKGVVIFSTA 886
           + E+ I S+  KG  I + +
Sbjct: 662 IAELPILSKG-KGNKIINIS 680


>gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
 gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
          Length = 747

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 257/745 (34%), Positives = 393/745 (52%), Gaps = 65/745 (8%)

Query: 1   MTEHIISSD----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M++     D    +  +   TS  ++  +   YLTYA++ I+ RA+PD RDGLKPVHRRI
Sbjct: 1   MSDDPNVPDPTPPDPSQDQTTSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQ +++R  L++GQGN
Sbjct: 61  LFAMRELRLSPTGAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FG++DGD PAA RYTE RL  AA  L++ L ++ VDFRPNYDG+ +EP+VL A +PN+L 
Sbjct: 121 FGNIDGDNPAASRYTEARLTAAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLC 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRT 235
           NG  GIAVGMATN+P HNL EV+D C+ +I  PD   D L+ I+ GPDFPTG V++  R 
Sbjct: 181 NGASGIAVGMATNVPPHNLHEVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRE 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    +E     + QIVVTEIPYQV K+ ++E++AE+++ K++  
Sbjct: 241 TIAEAYRTGRGSLRLRARWSVEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPI 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTL 354
           +AD+RDES      V+    R   A+ ++  L+R + L+  F +NM  L   + P+  +L
Sbjct: 301 LADVRDESAEDIRIVLEPRTRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCSL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+AF+  R EV+VRR+ + L+K   R  VL G  IA  NLD V+ IIR   +P+   
Sbjct: 361 KEVLRAFLDHRREVLVRRSNHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKAV- 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+VQ  AIL +RL  L  L   ++R
Sbjct: 420 ----------------------------MIAEFKLSDVQVEAILNMRLRALRRLEEIELR 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE--GLLDM 527
            E  +L  E +    +L+        I +EL   + +         RRT I E   + ++
Sbjct: 452 AEHENLTREREGLAAMLADEGAQWARIAEELRETRAKFGKSASGGQRRTEIGEAGEVAEI 511

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + +  I RE + V +S +G++        RA +      + V  +D D         T  
Sbjct: 512 DMDAMIEREPITVILSKMGWI--------RAMKGHQPLDAEVKFKDGDGPFMALHAETTD 563

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ F++ G  Y      LP G  +  G+ L  ++ L     +  + P+ + E       
Sbjct: 564 KLMVFAANGRFYTLPANNLPGG--RGMGEPLRLMIDLPNDAAVIDMFPWRDGER------ 615

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            + A+K G+      +D +   R+GK  +  ++     ++      + + +  +  + + 
Sbjct: 616 YLVASKAGDGFVVAGADILAQTRAGKQVLNGEA-----ALCRRVTGDHVAVVGQNRKLLV 670

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG 732
           FP+S +   A     GVR      G
Sbjct: 671 FPLSELPEMA--RGKGVRLQKYKDG 693


>gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
 gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
          Length = 801

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/744 (31%), Positives = 382/744 (51%), Gaps = 70/744 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+  RA+P + DG+KPV RRIL+ M +M +    K+VK AR+ 
Sbjct: 54  LPLDLYAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARVV 113

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL   
Sbjct: 114 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 173

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNL EV
Sbjct: 174 AELLLSEIDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 233

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +    +I +P+  LD ++ ++ GPDFP G   I     I++AYA GRGS+ +R    IE
Sbjct: 234 AEATCHLIRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRIE 293

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE--------------- 302
           + +  + +++V E+P+ V+ A +L +I  L   +      ++  E               
Sbjct: 294 ELARGQWRVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDTV 353

Query: 303 ----SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
               SD+   R+V+E K    + D  +  L  +TSL++  SVNM  +    +P++  L+ 
Sbjct: 354 RDESSDKAPVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLVQ 413

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ FR   V RRT++ L++   R H+L G  IA  ++++V+R+IR S  P+ A   
Sbjct: 414 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPA--- 470

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+VQ   ILE+RL +L  L    I  E
Sbjct: 471 --------------------------LIAAFGLSDVQAEDILEIRLRQLARLEGFKIEKE 504

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           LN L  E +    +L +RS +  +I +E+     +    RRT I         E  +  E
Sbjct: 505 LNELKEEREGLQHVLDNRSAMTRLILKEIGEDTKKYGDDRRTLIETVAPIASAEISVADE 564

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S  G++        R+++  G   + +  +  DF   L    T   ++   + G
Sbjct: 565 PVTVILSKNGWI--------RSRQGHGLDAAAISYKAGDFAFALLETRTTWPLIVIDTHG 616

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y  KV  LP G  +  G  +  ++    G +   ++      S       +FA   G 
Sbjct: 617 RAYTVKVSDLPGG--RGDGVPIATLVEFQDGGKPAQVV------SDDPATTWLFANSGGY 668

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                ++D     R+GK  M L+  +++L+      E  I   ++ G+ + FP + ++  
Sbjct: 669 GFLCSVADATSRQRAGKAFMALEKGEKVLAPAKVFGE-WIAAGSENGRILVFPRAEMKTQ 727

Query: 717 AGRNSVGVRGISLAKGDQVISMAI 740
           +     GV  ++L +G+ + ++A+
Sbjct: 728 S--GGRGVIVMALDEGEALSAVAV 749



 Score = 41.8 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  +  G+G   S  D     R+GK   A +  +     A V        + I   S+ G
Sbjct: 661 LFANSGGYGFLCSVADATSRQRAGKAFMALEKGEKVLAPAKVF------GEWIAAGSENG 714

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++  P  E++  S   +GV++ +  + E + +V  +   + V
Sbjct: 715 RILVFPRAEMKTQS-GGRGVIVMALDEGEALSAVA-VPADDAV 755


>gi|73916818|gb|AAZ93277.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 764

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 257/827 (31%), Positives = 417/827 (50%), Gaps = 83/827 (10%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYT
Sbjct: 1   RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP
Sbjct: 61  EARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIP 120

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R
Sbjct: 121 PHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVR 180

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ 
Sbjct: 181 SKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIA 240

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ 
Sbjct: 241 IELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILA 300

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L              
Sbjct: 301 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL-------------- 346

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+
Sbjct: 347 ------------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAII 394

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVK 549
                +  ++K+EL  VK +  TPR + + +    +E +       ED  V+V+  GY+K
Sbjct: 395 GDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIK 454

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A      G+     RD+D +  +    T   +L F+SLG V    +  L   
Sbjct: 455 RTSPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADI 509

Query: 610 SPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G+ L   + +    E I  +      +   +       T+ G ++R +  +F   
Sbjct: 510 RWKDIGEHLSQTITNFETNEEILYVEVL---DQFDDATTYFAVTRLGQIKRVERKEFTPW 566

Query: 669 N----RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                +S K A   D  D+I++V     ++ ++L ++ G  +RF I  + V     + GV
Sbjct: 567 RTYRSKSVKYAKLKDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGA-KAAGV 624

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L + D       VL +    +    Y+       + +S +    TS          
Sbjct: 625 KAMNLKEDD-------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATS---------- 667

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                                    KR       + N+  +   A  V++   +G   + 
Sbjct: 668 -----------------------RAKRGLQVLRELKNKPHRVFLAGAVAEQGFVGDFFST 704

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 705 EVDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 751



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 97/281 (34%), Gaps = 32/281 (11%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHG---NVRRNKLSDFIQINRSGKIAMKLDSRD----- 682
           T ++   E+E+       + A   G    +      +  ++ +           D     
Sbjct: 371 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAI 430

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---- 738
           EI +     +E+  +  TK G   R             +  +  I     D++I +    
Sbjct: 431 EIDTASLIAEEDTYVSVTKAGYIKRTS------PRSFAASTLEEIGKRDDDRLIFVQSAK 484

Query: 739 ----AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                ++  +  +   R  +       + +    ++ IT+ + +  +      ++  +  
Sbjct: 485 TTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDAT 544

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                   V+  G  KR    +F    + R  K ++   +   ++   +VAV P+  +D 
Sbjct: 545 T----YFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKLK--DDTDQIVAVAPIKLDD- 596

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 597 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 637


>gi|260437350|ref|ZP_05791166.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810262|gb|EFF69467.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 761

 Score =  490 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/778 (32%), Positives = 403/778 (51%), Gaps = 48/778 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     +D MQ SY+ Y+++VI  RA+PD+RDGLKPV RR+L+ M ++G+ ++K + K
Sbjct: 3   ETILKTEYSDVMQKSYIDYSMSVITARAVPDVRDGLKPVQRRVLYAMNELGLNYDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  + QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDAMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDVAAAMRYTEA 122

Query: 134 RLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K    +   DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGM T+IPT
Sbjct: 123 RLKKFTQDVYLKDLDKDVVDFVPNFDETEKEPSVLPVRVPNLLINGAEGIAVGMTTSIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G  A +DN DI    LME I GPDFPTG +++ ++ + + Y +G G + +RG
Sbjct: 183 HNLTEVINGVEAYLDNEDITTAELMEYIPGPDFPTGGIVINKSELADIYESGVGKVKVRG 242

Query: 253 VSHIEKTSG--DREQIVVTEIPY---QVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               E      D++++V+TEIPY          +  + +L+  K+  DI D+ +ES ++G
Sbjct: 243 KVVFEPGKKKTDKDKLVITEIPYTMIGTGIGKFISDVVDLIETKKTQDITDISNESSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A    + + LY+ T L+  F VNM+ +   +PE   L  I++  V F+ E
Sbjct: 303 IRIVLELKKNADVKKLEHLLYKKTKLEDTFGVNMLTIADGRPEVLGLRDIIRYNVEFQYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+   LL K  D   +  GL  A   +D ++ I+R S N + A+  L+         
Sbjct: 363 INTRKYTTLLKKEYDNKEIKEGLIKACNIIDLIIEILRGSTNLKQAKNCLISGDTEGIRF 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K      D           ++ +E Q  AILELRL +L GL  + +  E       I E 
Sbjct: 423 KSDKSEKDAK--------KLHFTERQATAILELRLYKLIGLEIEALEKEYEETLARIAEY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL S+  +   IK++L  +K E    R T I +G + + +E   V +++V  +   GY
Sbjct: 475 EEILGSKKVMKKTIKKDLERIKKEYGMERLTVIEDGEVAVYEEPKFVEQEVVFIMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  + +   +         +  +  +V   F       +  F+  G +++ KV  +P
Sbjct: 535 AKTIDTASFERNKE-------TIYAENKYV---FKCLNTEKICIFTDNGNLHQVKVVNIP 584

Query: 608 IGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               + +G  + N+ + N  GE I  +    + E        +F TK G ++    S+F 
Sbjct: 585 FTKFRDKGTPIDNLGNYNSAGEEIIYLCASKQLE----GRKFLFVTKQGMMKLVDGSEFD 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ--------------ENDILLTTKLGQCVRFPISA 712
              ++   + KL+  D I  +                      ++L T+ G  ++FP++ 
Sbjct: 641 ASKKT-VASTKLNIGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNE 699

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISG 767
           I     +++ GVRGI L K D++  + ++        DY  +   +K +   +R   G
Sbjct: 700 IPEK-KKSAAGVRGIKLEKEDKIAEVYLIPENADISIDYKGKEVSLKKLKTAKRDGKG 756



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 14/144 (9%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D         + +  G      C   +L+ +  L V+++G  K     +F  S    K +
Sbjct: 590 DKGTPIDNLGNYNSAGEEIIYLCASKQLEGRKFLFVTKQGMMKLVDGSEFDASK---KTV 646

Query: 828 RATDVSKINEIGALVAVFPVND-----------NDQIILVSDKGTLIRVPVNEIRIASRA 876
            +T ++  + I  +     V++           +  ++L ++ G  ++ P+NEI    ++
Sbjct: 647 ASTKLNIGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNEIPEKKKS 706

Query: 877 TKGVVIFSTAKDERVVSVERIRES 900
             GV      K++++  V  I E+
Sbjct: 707 AAGVRGIKLEKEDKIAEVYLIPEN 730


>gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 785

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/779 (31%), Positives = 377/779 (48%), Gaps = 86/779 (11%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+++   + D  + +    + +    Q +YL YA++V+ GRA+PD+ DG+KPV RRILF 
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLASYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 60  MMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +         K VK AR+ G+V+G++HPHG+ + YDAL R+AQD+S R  LI+
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL + A  LLD++ + TV F PNYDGS +EP  L AR P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVGFVPNYDGSTEEPRQLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
             L+NG  GIAVG+AT IP+HNL E+ D CVA++ NP +  + L  ++ GPD+P G  I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAAMVPGPDYPGGGQII 240

Query: 233 GRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
              G I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 292 RIVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYT 331
                  L  E                   S     R+V E K G      ++  L  +T
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGKVPQQELITTLLAHT 360

Query: 332 SLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N+  +    KP + +L  +L+ ++AFR++ + RR+++ L K  DR H+L G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              + N+DEV+ IIR +  P+ A   L++R                            LS
Sbjct: 421 QTVLLNIDEVIAIIRTADEPKAA---LIER--------------------------FRLS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +   
Sbjct: 452 DRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           +    RRT I        +   +      V VS  G+V        RA++  G       
Sbjct: 512 QFADARRTLIQADKRATAEVKVVDEPVT-VVVSQKGWV--------RARQGHGHDAGTFA 562

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D +   F   T  +++ F S G VY   V +LP    +  G+ +  ++ L  G + 
Sbjct: 563 FKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGA--RGDGQPITTLIELEAGTQP 620

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--- 687
                 P       N  ++ A   G      +      NR GK  + L   +++      
Sbjct: 621 VHYFAGPA------NAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHA 674

Query: 688 ------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                 +       +   +  G+ + F I+ ++  A     G+  I L   D +   A 
Sbjct: 675 AFTSGSQALVPATHVCCASAGGRILTFEITELKQMA-NGGRGLMLIDLEPKDTLAGAAA 732


>gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 740

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 246/738 (33%), Positives = 379/738 (51%), Gaps = 58/738 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     ++  E    I   S +D +   YL YA++ I  R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MANDTYTNPGEH---IDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++  + + K AR+ G+VMGK+HPHG+AAIYDA+ R+AQ++++R  L++GQGNFG++
Sbjct: 58  RQLKLDPGQGFKKSARVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LLD + +D+VDFRP YDG  +EPV+L A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTEARMTEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +P+  +D LM+ ++GPDFPTG +++     I++
Sbjct: 178 GIAVGMATSIPPHNVIELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIRD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R    IEK  G   QIVVTEIPYQV K+ ++E++AE++  K++  +AD+
Sbjct: 238 AYATGRGGFRVRARWEIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLADI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGIL 358
           RDES      V+    R    ++++  L++ + L++   +N+  L+   +P    L G L
Sbjct: 298 RDESAEDLRIVLEPKSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGAL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            A++A R+ V+ RR  + L K   R  VL G  I   NLDEV+ IIR S +P  A   L+
Sbjct: 358 NAWLAHRQVVLQRRAHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDA---LI 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AIL++RL  L  L    +R E +
Sbjct: 415 AR--------------------------FDLTETQANAILDMRLRSLRRLEEMALRTERD 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCI--V 534
           +L  E  +  ++L++       I  E+  +KD       RRT + +      D   I   
Sbjct: 449 NLVAEQADLQNLLANEDLQWKKIATEIKDMKDSFAKHDRRRTTLADAPEIDFDPTEILVE 508

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE + +  S  G++        RA +   +  S    ++ D    +    T   +L F+ 
Sbjct: 509 REPITIICSAKGWI--------RAMKGHQELDSEFKFKEGDGPGLVLHAETTDKILLFAD 560

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y     RLP G  +  G+ +  +  L     I T++     +       ++ A   
Sbjct: 561 NGRFYTLAGDRLPRG--RGFGEPVSLLTDLPADIEIITLLRGVAGK-------MLVAAST 611

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+     +   I   RSGK  + L      ++       + +       + + FPIS + 
Sbjct: 612 GHGLIVDMQSAIAQTRSGKQILNLPGDARAVACCMV-DGDMVASVGVNRKLLAFPISELP 670

Query: 715 VFAGRNSVGVRGISLAKG 732
                   GV       G
Sbjct: 671 EMT--RGRGVILQRFKDG 686


>gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium]
          Length = 765

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 236/727 (32%), Positives = 371/727 (51%), Gaps = 52/727 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   +I  E+++ YL YA++ I+ R++PD+RDGLKPVHRRILF M  + ++    + K
Sbjct: 7   EKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GK+HPHG+ A YDA+ R+AQD++ R  L++GQGNFG+VDGD  AA RYTE 
Sbjct: 67  SARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL+DL + TVD  P YDGS +EPVVL AR+PN+L NG  GIAVGM+T IP H
Sbjct: 127 RLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRG 252
           N GEV+   + +I +PD  +  LM+ + GPDFPTG V++     ++  YATGRG + +R 
Sbjct: 187 NAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
               E       ++VVTEIPY V K  ++E+IA+L+ +++   ++D+RDESD +   V+ 
Sbjct: 247 RWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAKVRIVLE 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGILKAFVAFREEVVVR 371
              RG   + I+  L++ + L+   +VN  V     +PE   L G+L+A++  R +V  R
Sbjct: 307 PRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQVHTR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L + R+R H+L        N+D V+ II+   +P  A   LMQR           
Sbjct: 367 RATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPA---LMQR----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            +   Q  A+L LRL  L  L    IR E+        E   +L
Sbjct: 413 ---------------FGMDSEQAEAVLNLRLRALRRLEEMSIRKEMGEKEARAAELSAML 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVK 549
           +  + +   ++ E+   + E    RRTR+     +++        +E +   +S  G++K
Sbjct: 458 ADPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDLRPEDLIQKEPLTAVLSRKGWIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                   A +        +  ++ED +       +H +V F ++ G VY     RLP G
Sbjct: 518 --------ALKGHDIDLEKIRFKEEDGLERAVKGYSHQTVTFLAASGKVYSLLGDRLPSG 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G+ L  +  L+ G+RI  ++    +            T+ G   R +  D +   
Sbjct: 570 KR--FGEPLTVLFELDPGDRILWMLAVDPEGE------YFVTTRLGQGFRIRGRDLVANQ 621

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+GK  + L   D+ L V        +   +   + +   +    +       GVR  +L
Sbjct: 622 RTGKQVVSLREGDQPLHVHPVRGA-AVAAISHGRRLLICRLEEFPLLG--RGKGVRIQNL 678

Query: 730 AKGDQVI 736
            +G+ ++
Sbjct: 679 GRGEGLV 685


>gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
          Length = 747

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 235/747 (31%), Positives = 384/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDNYRAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 736

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/765 (32%), Positives = 389/765 (50%), Gaps = 61/765 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    + KC
Sbjct: 7   HIEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTAGFKKC 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTESR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LL+ + +D+VDFRP YDG   EPVVL A +PN+L NG  GIAVGMAT+IP HN
Sbjct: 127 LTAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           +GE+    +A+I  P      L+  + GPDFPTG  I+  R  I  AY TGRGS  IR  
Sbjct: 187 VGEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSFRIRSK 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+      QIVVTEIPYQV K+ ++E++A+L+ +K++  +AD+RDES      V+  
Sbjct: 247 WDVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTTDIRLVLEP 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             RG    V++  L+R T L+S F +NM  L     P   +L  +L+A++  R +V++RR
Sbjct: 307 KSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLLRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +   L     R  +L G      NLDEV+RI+R   + ++A                   
Sbjct: 367 SANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSA------------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q  ++L +RL  L  L   +IRNE   L  E +   D+L 
Sbjct: 408 ----------LIAAFDLTELQADSVLNMRLRSLRRLEEMEIRNEHARLSAEKQALHDLLE 457

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDCIVRE--DMVVTVSHLG 546
           +  +    I  E+  ++          RR+ + +  ++++ E  +  E   + V +S  G
Sbjct: 458 NEGQRWKHIAGEIKDIQKTFGGGTLGKRRSLLADAPVEIDVEAALPVERDPLTVILSQKG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++ V        R  G+    +  ++ D +       ++  +  F++ G  +  +V  L
Sbjct: 518 WIRTV--------RGHGQDPQALKFKEGDDLGMAVECHSNDRLCVFATDGRAFTLRVADL 569

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L+  E I T+ P        +    + A+  G       S   
Sbjct: 570 PRG--RGDGQPLRLLIDLSNDEDIITMFPL------DDARRRLLASSTGRGMIVAESAMT 621

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+G+  + L  R+  L +    + + +L+  +  + + FP+  +   A    +GV  
Sbjct: 622 AEKRTGRQVLNLKDRESAL-ICVPAEGDHVLVLGQNRRMLVFPLDQLPEMA--RGLGVIL 678

Query: 727 ISLAKG---DQVI--SMAIVLHADADYDERICYMKHMSAQRRLIS 766
                G   D V+  + A V   D         +K    +R  + 
Sbjct: 679 QKYKDGGLKDAVVFTADAGVAWPDPARVRAFADLKDYVGKRAEMG 723


>gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 750

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 251/803 (31%), Positives = 398/803 (49%), Gaps = 66/803 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I +       I  + + D ++  YL YA++ I+ RA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MADETILAPPP----IEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+V+GKYHPHG+ ++YDAL R+AQ +S R  L++GQGNFG++
Sbjct: 57  RQLKLDPAGGFKKCARVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD + +DTVDFR  YDG  +EPVVL A +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARMTAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  EV D  + +I +P   ++ L+  + GPDFPTG V++    G+  
Sbjct: 177 GIAVGMATSIPPHNADEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R   H E T     QI+VTEIPY V K+ ++EK+A+L++ K++  + D+
Sbjct: 237 AYRTGRGSFRLRARWHTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDI 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
            DES      V+    R   A +++ QL+R T L++   +NM  L+  + P+   L  +L
Sbjct: 297 DDESAEDIRIVIEPKSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQVL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R  V+ RR+++ L +   R  VL GL IA  NLDEV+RIIR    P+ A   L+
Sbjct: 357 QEWLDHRRVVLRRRSEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPA---LI 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L++VQ  AIL +RL  L  L   +IR E +
Sbjct: 414 AR--------------------------FALTDVQAEAILNMRLRSLRKLEEIEIRAEND 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DE 530
            L  E +  +++L S       I  E+  +K +         R+T +   L D++   +E
Sbjct: 448 RLTTEREGLVELLGSDEMQWDRISAEIKGIKKQFGKATPLGKRKT-VTAALPDIDVAVEE 506

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  + +D +       T   ++
Sbjct: 507 ALIDKEPVTVVLSEKGWI--------RALKGHDGDLAKLTFKTDDVLKVAIKAQTTDKIV 558

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y  +   LP G  + +G+ +  ++ L++ +         E         +V 
Sbjct: 559 LFATNGKFYTLEASELPGG--RGQGEPVRLMIDLDEADE------LLETFVHKPGRKLVV 610

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  GN       + +   R GK  + L   +  L      + + + +  +  + + FP+
Sbjct: 611 ASSVGNGFVVTEDEVVAQTRKGKQVLNLGDGERALLCRPA-EGDAVAVVGENRRLLVFPL 669

Query: 711 SAIRVFAGRNSVGVRGISLAKG---DQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           + +         GVR      G   D  +  A      +D   R+  +  +   +   + 
Sbjct: 670 AELNELT--RGRGVRLQKYKDGGLADVQVFTAATGLKLSDTSGRVRTVTELDEFKGARAA 727

Query: 768 DTEEITSLKNDSSVEGNISEERC 790
               +      S   G    E  
Sbjct: 728 AGSAVPKGWPKSGRFGLTGFETA 750


>gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 790

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 367/752 (48%), Gaps = 70/752 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V I +  + +YL YA++V+ GRA+P++ DG KPV RRIL+ M QMG+    K+VK AR
Sbjct: 41  DEVKIAEYAERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKSAR 100

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+++ Y+A+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL 
Sbjct: 101 VVGDVLGKYHPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEARLT 160

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL +L   TVDF PNYDG+FQEP +L AR P VL+NG  GIAVGMAT IP+HNL 
Sbjct: 161 PIADLLLSELDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLK 220

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSH 255
           EV    VA+  NP++  D L+  I GPDFP G  I+     I++AYA+GRGS+ +R    
Sbjct: 221 EVAKAAVALAKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRARWS 280

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--------------------RIVD 295
           IE+ +  + Q+VV+E P+ V+   +LE+I EL   K                     ++D
Sbjct: 281 IEQLARGQWQVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSVLD 340

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
                 +  ++   V        S D ++  L  +TSLQ+  SVN+  +    +P++  L
Sbjct: 341 AVADESDKSQKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDGRPQQKAL 400

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V FR   V RR  Y L +  DR H+L G  I   N+DEV+++IR S  P+   
Sbjct: 401 TQVLREWVEFRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAPKE-- 458

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE+RL +L  L    I 
Sbjct: 459 ---------------------------DLMKKFDLSERQAEDILEIRLRQLARLEGIKIE 491

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E+  L  E KE   +L S   L  ++  E+ +   +    RRT I E     +    + 
Sbjct: 492 REIKELKAEAKELKRVLGSEEALRELVVGEIEADAKQYGDERRTLI-EEAQITKVTAQVS 550

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V +S   +V        R +   G   S +  +D D +   +   T    +   S
Sbjct: 551 DEPVTVFISQRFWV--------RTRLGHGIDASAIAFKDGDSIAATYECRTTDQCIVICS 602

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G V    V  LP G  +  G  L   + L  G +I                 V+ +T  
Sbjct: 603 NGRVCSIPVSALPTG--RGDGAPLATFIELAPGAKIAHAFC------GKTETPVLISTSA 654

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAI 713
           G      + D +  N++GK  + +     +  V     Q + +   +K  + + F +S +
Sbjct: 655 GYGFPCFIGDMVGRNKAGKQFISVKEETILPPVLLAPTQHSLVAALSKNARLLVFVLSEL 714

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           ++  G    G+  I L +GD++ +  ++   +
Sbjct: 715 KLLQG-GGKGMMLIDLKEGDELTACTVINTPE 745


>gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
 gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
          Length = 575

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 251/537 (46%), Positives = 349/537 (64%), Gaps = 27/537 (5%)

Query: 3   EHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +   S+ E+   G   +S    EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M 
Sbjct: 55  DRGASAGEDINGGQLQISEFGREMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMN 114

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+  N+ + K A   GEV+GKYHPHG++A+Y+A+ R+AQ +S+R  LI+G GNFG++D
Sbjct: 115 ESGIYPNRPHKKSAWTVGEVIGKYHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNID 174

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LL DL KDTVD++PNYD S  EPV L AR+PN+LVNG  G
Sbjct: 175 GDGAAAMRYTESRLAKPAMELLRDLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQG 234

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNI  HNL E ++    +IDNPD  +D LM+I+ GPDFPTGA+I+G  GIK +Y
Sbjct: 235 IAVGMATNIAPHNLAEAIEATCYLIDNPDATVDELMQIMPGPDFPTGAIIMGSAGIKQSY 294

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI +R  +H+E T   R ++V TEIPY VNK  + EKIA+LV +KRI  I+D+RD
Sbjct: 295 ETGRGSITVRAKAHVESTKTGRSRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRD 354

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES+++G R+VIELK+G    V+LN LY+YTSLQ+ F  N +AL    P+  +L  +L+ +
Sbjct: 355 ESNQKGIRLVIELKKGVIPQVVLNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHY 414

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  + +VV RRT++ L KA+ RAH+L G  +A+ ++DEV+ IIR S     A   L++R 
Sbjct: 415 IDHQVDVVTRRTRFDLKKAQARAHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIER- 473

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                       +  QT AILE++L RLTGL RD I+ EL+ L 
Sbjct: 474 -------------------------FGFTPEQTTAILEMKLRRLTGLERDKIQEELDGLR 508

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
             I    D+L+   ++LG+IK+E+  +  +    RRT I +   D++ ED I  E+ 
Sbjct: 509 RAIAYYEDLLAHEEKILGVIKEEMREISKKFGDKRRTEISQVEKDLDVEDLIADEEY 565


>gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris]
          Length = 747

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 238/740 (32%), Positives = 364/740 (49%), Gaps = 65/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 HLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LIAR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQLMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S  NN   V A+ 
Sbjct: 555 SDGRAYSTLVHTLP--SARGNGEPLTGRFSPASGASFQVL------ASGENNARFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +    S
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAITAS 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +         G + I + K
Sbjct: 667 DLPELD--KGKGNKLIEIPK 684


>gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060]
 gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS
           2060]
          Length = 748

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 252/735 (34%), Positives = 372/735 (50%), Gaps = 59/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      +    GI SV +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKPFEPPSDH--GGIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ N  + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 59  RLLRLDPNTAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +D VDFRP+Y+G   EPVVL   +PN+L NG  
Sbjct: 119 DGDGPAAYRYTEARLTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQ 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I +P    + L   ++GPDFPTG +++     I  
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E        +VVTEIPY V KA ++EK+AEL+ E+++  +AD+
Sbjct: 239 AYRTGRGAFRVRARWTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R     V++  L+R T L+S FS+NM  L   + P    L   L
Sbjct: 299 RDESAEDVRIVLEPRSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEAL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R  V+ RR+++ L +   R  +L GL I   +LD+V+RIIR    P   + ELM
Sbjct: 359 REWLDHRRTVLQRRSRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEP---KAELM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 416 R--------------------------YFQLTEVQANAILDTRLRSLRKLEEMELKREQA 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMED----E 530
           +L  E  +   +L S +     I  ++ +VK          RR   +E   D  D    E
Sbjct: 450 ALTAEKADLDALLGSEALQWKSIAAQVRAVKKTFGPETPLGRRRTTLENPPDTSDLDLAE 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        R+ +      SGV  + +D +   F   T   +L
Sbjct: 510 AMIEREPITVIVSQKGWI--------RSLKGHVADLSGVQFKGDDALKLSFPTETTAKLL 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+     +LP G  +  G  +  +  L++G  I T+ P+           ++F
Sbjct: 562 VLASNGKVFTLDAAKLPGG--RGFGDPIRLMADLDEGTDIVTVWPYRA------GAKLLF 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G          +   R GK  + LD    +       + + +    +    V FP+
Sbjct: 614 GTIDGRGFTTGSDGLVANTRKGKQVVALDGAAVVTHCVEVGEGDHVAACGENRLLVVFPL 673

Query: 711 SAIRVFAGRNSVGVR 725
           + I   A     GVR
Sbjct: 674 TEIPEMA--RGKGVR 686


>gi|1495800|emb|CAA65021.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 620

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 240/651 (36%), Positives = 366/651 (56%), Gaps = 37/651 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   KA  R  ++ GL   ++ LDEV+ +IR S N    +  L                
Sbjct: 362 PFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK    TPR + + +    +E +       ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A      G+     RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAASTLEEIGK-----RDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +  G+ L   + +    E    I+     +   +      AT+ G ++R +
Sbjct: 571 KDIGEHLSQTITNFETNE---AILYVEVLDQFDDATTYFAATRLGQIKRVE 618


>gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
 gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
          Length = 747

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 382/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           +   R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KVELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVAFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TILAANAKDRSELLTKLLLISDQASLE 703


>gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
 gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
          Length = 748

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/758 (32%), Positives = 382/758 (50%), Gaps = 68/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +  D EE+     + +    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTESTVVYDAEEQ-----IPLKQFSEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKSTAKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQ 115

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   +  LL +LG+ TVD++PN+DG+  EP VL A+ P VL+NG 
Sbjct: 116 DDPKSFAAMRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNGT 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP HNL E+V+  + +++NP+  +  L E + GPD PT A I+  R  I 
Sbjct: 176 TGIAVGMATDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDII 235

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R +   E         V+T +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 236 KMYETGKGSLKMRAIWTKEGND-----AVITALPHQVSGAKILEQIAAQMQAKKLPMVAD 290

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        D ++N L+  T L+  + VN+  +    +P   +L 
Sbjct: 291 LRDESDHENPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGINGRPGVRSLD 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  +++FR   V RR ++ L+    R H+L    IA  NLDEV+ I+R    P   R 
Sbjct: 351 KILGDWLSFRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKP---RE 407

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LMQR                            L+E Q   IL+ RL +L  L    IR 
Sbjct: 408 VLMQR--------------------------FDLTEEQANYILDTRLRQLARLEEMKIRG 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E + L  E       L S   +  +IK+++L V  E    RR+ IV  E      ++  +
Sbjct: 442 EQDELQKERDTIEKTLGSARMMKTLIKKDMLQVLKEHGDERRSPIVTREESQAFSEDQLL 501

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R+ +      + +  +  D         ++ SV+   
Sbjct: 502 TSEPVTVVLSEKGWI--------RSAKGHEMDPASLSYKAGDEFKFASRGKSNQSVILID 553

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ +   L+   G  I  ++   ED+       V+ A+ 
Sbjct: 554 STGRSYALAAHTLP--SARGQGEPVTGRLNPPSGATIEGMLMGSEDQR------VLLASD 605

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPIS 711
            G     KL D +  N++GK A+ L    E+L        ++  L   +  G+ + F ++
Sbjct: 606 AGYGFVGKLGDLVSKNKAGKAALTLPKGAEVLPPTVIEDLDNTWLAAFSNEGRLLVFKVT 665

Query: 712 AIRVFAGRNSVGVRGISLA----KGDQVISMAIVLHAD 745
            +   A      +  I  A    + + VI++A+V  +D
Sbjct: 666 ELPELARGKGNKIINIPSARVQNREEFVIALAVVQASD 703


>gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 798

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 231/773 (29%), Positives = 370/773 (47%), Gaps = 80/773 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   S   E +  I    +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M
Sbjct: 32  MSQETPSVLSENDTLI----LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAM 87

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 88  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 147

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F+EP +L AR P VL+NG  
Sbjct: 148 DGDGAAAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGAS 207

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP HNLGEV    +A++  P ++   LME I  PDF  G  I+     ++ 
Sbjct: 208 GIAVGMATEIPPHNLGEVTQAAIALLKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQ 267

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IE+ +  + +++VTE+P   N A +L +I E    K        
Sbjct: 268 IYETGKGSVRVRARYEIERLARGQWRVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQL 327

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+    +
Sbjct: 328 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLM 387

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ L++   R H+L G      ++D
Sbjct: 388 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHID 447

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+T                                    L+E+Q   IL
Sbjct: 448 EVIKVIRESDDPKT-----------------------------DLMAAFGLTEIQAEDIL 478

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 479 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKKKLIIKEMQADMKQYGDERRT 538

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 539 -LVEEAGRAVLTQTTADEPVTLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 589

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   +LG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 590 QTLEGRTVQPVIILDTLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPAAML---- 643

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
             +     + + A   G     KL+D +  N++GK+ M LD+ + +L             
Sbjct: 644 --TGVPEQHYLLAGSGGYGFIAKLADMVSRNKNGKVLMTLDAGETVLPPVPVYASSLINP 701

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +  ++L     + + FP+  ++V       G++   L+   ++  +A+V   +
Sbjct: 702 DCKVVLADSGNRLLAFPLGELKVMP--KGRGLQLTPLSDDLRLEHIAVVSTPE 752


>gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1]
 gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1]
          Length = 795

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 250/790 (31%), Positives = 381/790 (48%), Gaps = 98/790 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   S D  ++    ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQT-SLDLAQQAAGDALDLGQYAQRAYLEYALSVVKGRALPDVTDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++        K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 60  DRMGLSYSGPNHNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 119

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 120 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPQQLPARLPF 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA+I  P +  + L +II GPD+P G  I+ 
Sbjct: 180 ALLNGASGIAVGLATEIPSHNLREVADACVALIKRPQLSDEELFQIIPGPDYPGGGQIIS 239

Query: 234 R-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I++AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 240 SASDIQDAYRTGRGSLKLRARWKIEELARGQWQMVVTELPPGVSAQKVLEEIEDITNPKV 299

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 300 KTGKKALSQEQTQLKASMLAVLDGVRDESSKDAPVRLVFEPKTGKVPQQELITALLAHTS 359

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+  +    +P + +L  +L+ ++AFR+  V RR+++ L K  DR H+L G  
Sbjct: 360 LESSSSINLTMIGLDGRPVQKSLRLMLEEWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQ 419

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P  A                                   LSE
Sbjct: 420 AVLLNIDKVIAIIRASDEPRQA-----------------------------LIDAFALSE 450

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S S +  +I +E+ +   +
Sbjct: 451 RQADDILEIRLRQLARLEAIKIEQELKELRTEQGKLEDILGSESTMRRLICKEIEADAKQ 510

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I +    +  E  +V E   V +S  G+V        R ++  G     +  
Sbjct: 511 FADARRTLI-QEEKKVVAEVKVVDEPTTVIISDKGWV--------RTRQGHGVDAGTLSF 561

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G +Y   V +LP G  +  G+ +  ++ L  G +I 
Sbjct: 562 KAGDSLHGTFECRTVDQLLAFGSNGRIYSVPVAQLPGG--RGDGQPVTTLIELEAGTQIL 619

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                 E         ++ +   G      + D +   ++GK  + L   + + +  T  
Sbjct: 620 YYFAGAE------GTALLLSGSGGYGFVAMVGDMVSRQKAGKAFVTLADGETLCAPSTAY 673

Query: 692 Q---------------------ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                                    ++  +  G+ + F I++++  A +   G+  + L 
Sbjct: 674 GVPMGARAEPQEGEQGAGLLLPATHVICASTGGRILTFEIASLKHMA-KGGRGLMLLDLE 732

Query: 731 KGDQVISMAI 740
             D +   A 
Sbjct: 733 DKDTLAGAAA 742


>gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 898

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/734 (33%), Positives = 412/734 (56%), Gaps = 46/734 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H E     +  IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQE-----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A+A LDEV+++IR S N   A   L++           
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALAILDEVIKVIRKSENRIDAINNLVK----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q+ AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L  VK +    R++++ +    LD++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  ++         G+     +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVIDNNILNKNELSSFGK-----KPNDMWIGQGVCSNLDHLILVSDQANYYSIPLYKIAN 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I       E  +S    +++  +K+G ++R ++SD    
Sbjct: 566 SKWKDQGVHINSVATTQPNETIINAFIIKEFINSTQ--HLLLVSKNGLIKRTQISDLETK 623

Query: 669 --NRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N+S KI MK+   D ++  +  + + +   + TK G  VR+ I  I V +   S GV+
Sbjct: 624 IFNKSFKI-MKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQST-ISKGVK 681

Query: 726 GISLAKGDQVISMA 739
             +L K D +IS  
Sbjct: 682 AANL-KDDHIISAL 694



 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 101/267 (37%), Gaps = 12/267 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E +   +   + E        ++ +K G ++     D   +N++   +      D  +  
Sbjct: 481 EDLVEDLDVDQKEVIIEKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWIGQ 537

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KGDQVISMAIVLHA 744
             C+  + ++L +        P+  I   +     GV   S+A     + +I+  I+   
Sbjct: 538 GVCSNLDHLILVSDQANYYSIPLYKI-ANSKWKDQGVHINSVATTQPNETIINAFIIKEF 596

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   K+   +R  IS  +T+          +  + S      +  K  +   +
Sbjct: 597 INSTQHLLLVSKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCII 656

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+  R +  D  + +   KG++A ++    +   +++   +++N  +++ ++K    
Sbjct: 657 TKNGYAVRYNIEDIPVQSTISKGVKAANL----KDDHIISALSLDNNKDVLIFTNKNNYK 712

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDER 890
           R+  N I I  R  KG+ I    K  +
Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEKKKNK 739



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   I++   A+Y     Y    S  +          T+  N++ +   I     +E   
Sbjct: 543 LDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFI----IKEFIN 598

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q +L VS+ G  KRT   D      + K  +   +S  + +  + A    +      +
Sbjct: 599 STQHLLLVSKNGLIKRTQISDLETKIFN-KSFKIMKISDDDSL--VYADLISSKTSYCCI 655

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++  G  +R  + +I + S  +KGV   +  KD+ ++S
Sbjct: 656 ITKNGYAVRYNIEDIPVQSTISKGVKAANL-KDDHIIS 692


>gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
          Length = 767

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 244/744 (32%), Positives = 362/744 (48%), Gaps = 70/744 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++G   +++    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K V
Sbjct: 12  DQGGDDITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPV 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A YDA+ RMAQD+ LR  L++GQGNFGS DGD  AA RYTE
Sbjct: 72  KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LLD+L + TVDF  NYDGS +EPV+L AR P +L+NG  GIAVGMAT IP+
Sbjct: 132 ARLTPFARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPS 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HNL EV   CVA+I NP +  + L  ++ GPDF  G  I+     I + YA+GRGSI  R
Sbjct: 192 HNLREVAQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKAR 251

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-------- 303
                E+ +  + Q+VV E+P   +   +LE+I +    K       L  E         
Sbjct: 252 ARWQFEELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALML 311

Query: 304 ------------DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPE 350
                       D     V          D  +N L   TS++   S+N+V +    +P 
Sbjct: 312 GLLDAVRDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPG 371

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +  L  +L  ++ FR + + RRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P
Sbjct: 372 QRALRQVLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEP 431

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
             A   LMQR                            LSE Q   ILE+RL +L  L  
Sbjct: 432 RAA---LMQR--------------------------FDLSERQAEDILEMRLRQLARLEG 462

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL +   E     ++L + S    ++ +E+ +   +    RRT I      + + 
Sbjct: 463 FKIEKELAAQRDEQAALRELLDNPSAFKRLMIKEIEADAKQYGDDRRTLIEVAERAVLEN 522

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              V E + V +S  G++        R+++  G   S    +  D + D     +   ++
Sbjct: 523 RV-VEEPVTVIISQRGWL--------RSRQGHGHDASQFNFKAGDGLYDAIECLSTDELV 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G VY   V  LP  S +  G+ + +++ +  G RIT ++     +        V 
Sbjct: 574 AFSNTGRVYTVAVSSLP--SARGDGQPVTSMMEVESGSRITHMIAGAAQQR------YVL 625

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFP 709
            T+ G      L D     R+GK  + LD  D ++        +  + +  K G+ +   
Sbjct: 626 GTQAGYGFITTLKDLTTRQRAGKQFITLDDGDVLIKPLRLRDTDQHLAMLAKKGRFLVVA 685

Query: 710 ISAIRVFAGRNSVGVRGISLAKGD 733
           +S ++  +G    G   + L  GD
Sbjct: 686 LSELKRLSG-GGRGTILMGLDAGD 708


>gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 747

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 365/740 (49%), Gaps = 65/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  + VN+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLK 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 HLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LIAR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E ++ L IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKEREQILSILGSKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S  NN   V A+ 
Sbjct: 555 SDGRAYSTLVHTLP--SARGNGEPLTGRFSPASGASFQVL------ASGENNARFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +    S
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAITAS 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +         G + I + K
Sbjct: 667 DLPELD--KGKGNKLIEIPK 684


>gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 747

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 364/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  +  N+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 QLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + +
Sbjct: 443 EQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SEGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 EVPELDKGKGNKIIEIPKAK 686


>gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3]
 gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 755

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/809 (29%), Positives = 395/809 (48%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HN  E+V  CV ++DNP  DL  LME + GPD+PT A +I     I 
Sbjct: 177 TGIAVGMATDVPPHNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADIA 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI  R V  IE       ++V++ +P+Q +   +LE+IA  ++ K++  + D
Sbjct: 237 KIYQTGRGSIKARAVYTIENG-----EVVISALPHQASSGKILEQIAAQMQAKKLPMVTD 291

Query: 299 LRDESDRQGY--RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        D ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHESPVRMVIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNGRPQVKGLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR ++ L+K   R H+L  L IA  N+DEV+ IIRF  +P   + 
Sbjct: 352 ELLTEWLVFRMTTVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM R                            LS+ Q  AIL+L+L  L  L    I++
Sbjct: 409 ELMTR--------------------------FELSDKQADAILDLKLRHLAKLEEFKIKS 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +LSS  R+  +IK+EL+   ++    RR+ +V       + +++ +
Sbjct: 443 EQSELEAERDKLQLLLSSERRMKTLIKKELIKDGEDYGDDRRSPLVVRGESKALTEQELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D         ++   +F  
Sbjct: 503 PAESVTVVLSEKGWV--------RCAKGHEVDGKSLSYKAGDEFLCSAPGRSNQPSVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  +  +   LP  S +++G+ +    +L  G  +  ++   E      +   + A+ 
Sbjct: 555 TSGRAFATETHTLP--SARSQGEPITTRFNLAPGATMEHVLLADE------SQCYILASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPIS 711
            G        D I  N++GK  + L +  ++L  +   +     IL  T  G+ + F + 
Sbjct: 607 AGYGFIAANKDMISRNKAGKALLSLPANAKVLLPQKVDKSKAQSILAITNEGRMLLFSLD 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+          + GI        ++++    V+  D            + A +R ++  
Sbjct: 667 ALPQLTKGKGNKIIGIPTERAKNREELLIHLNVIPEDMPV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H]
 gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H]
          Length = 769

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/804 (30%), Positives = 409/804 (50%), Gaps = 70/804 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  V +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 10  DGVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSATAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ TVD++PN+DG+ QEP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 130 SRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNGITGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HN+ EV D CV +I+NP  ++  L+E ++GPD+PT A +I  +  I+  Y TGRGSI +R
Sbjct: 190 HNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEIEKIYQTGRGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V  +E+       IV+T +P+Q +   +LE+IA  +  K++  + DLRDESD +     
Sbjct: 250 AVYDVEQGD-----IVITSLPHQASGGKILEQIAGQMTAKKLPMVVDLRDESDHENPVRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I        + ++  L+  T L+  + VN+  +    +P    L+ IL  ++ +R E 
Sbjct: 305 VIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDNRPAVKNLLVILSEWLEYRRET 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL +A  N+DEV+ IIR   +P   + ELM R        
Sbjct: 365 VRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDP---KAELMSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  +ILE++L +L  L    IR E + L IE     
Sbjct: 414 ------------------FALSDTQAHSILEIKLRQLAKLEEIKIRAEQDELRIEQDYLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL+S++R+  ++K+E+L+  ++    RR+++VE      + ++D +  E + V VS  G
Sbjct: 456 KILNSKARMSTLMKKEILAAAEQYGDDRRSQLVERSESKALTEKDLVPSEAVTVVVSDKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +         R  +      + +  +  D         ++  V+F  S G  +      L
Sbjct: 516 WA--------RCAKGHDIDPTSLSYKAGDGYLCASKGRSNRPVVFIGSDGRAFTTDAHTL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  + +++G+ L    +L+ G+     +       S ++   +  +  G    +   D +
Sbjct: 568 P--TARSQGEPLTGRFNLSTGKTFVHSIM------SDDDAQYLLVSDAGYGFVSSFGDMV 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N++GK  + L    ++L  +     + ++ L  T  G+ + FP+  + V +      +
Sbjct: 620 SRNKNGKALISLPEAAKVLMPQCINNIENDNCLTITSEGRMLVFPVKNLPVLSKGKGNKI 679

Query: 725 RGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
             I  A+    ++ +S+  ++   A           + A +R ++    +I   K +   
Sbjct: 680 INIPSARSKLREEFVSLLCIIPEGA--------AITLHAGKRKLTLKAADIEHYKGERGR 731

Query: 782 EGNISEERCQELKLKEQFILTVSE 805
            GN      Q +   E    +V+ 
Sbjct: 732 RGNKLPRGLQRVSAVEIESGSVTN 755


>gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
 gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
          Length = 747

 Score =  489 bits (1258), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 384/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  +PR +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYTSPRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
 gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
          Length = 750

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 251/796 (31%), Positives = 406/796 (51%), Gaps = 72/796 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D     G  ++++ D ++  YL+YA+  I+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MGQEVIGQD-----GPETINLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ N+ + KCAR+ G+VMGKYHPHG+AAIYDAL R+AQD+S+R  +++GQGNFG++
Sbjct: 56  RLLKLDPNQGFKKCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNI 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  +LD L ++ VDFR  YDG   EPVVL   +PN+L NG  
Sbjct: 116 DGDSAAAMRYTEARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGST 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I  PD +++ L+E I+GPDFPTG  I+   G I  
Sbjct: 176 GIAVGMATSIPPHNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILE 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R   H E+       IVVTEIPY V K+ ++EKIAEL+  +++  + D+
Sbjct: 236 AYKTGRGSFRTRAKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDI 295

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   +    ++++  L++ T L++ FS+NM  L  G  P+  +L  +L
Sbjct: 296 RDESAEDVRVVLVPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVL 355

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  ++EV+VRR+ + L++   R  VL G  +A  N+DEV+RIIR   +   A+  L+
Sbjct: 356 QEWLEHQKEVLVRRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDD---AKASLI 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             L+EVQ  AIL +RL  L  L   +I+ E +
Sbjct: 413 K--------------------------AFDLTEVQAEAILNMRLRSLRKLEEFEIKKEHD 446

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRI-VEGLLDMEDED- 531
            L  E      +L+S  +    + +++  +            RRT        D+E+ + 
Sbjct: 447 KLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGPETEIGARRTDFGTADDRDLEEINQ 506

Query: 532 -CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        R  +   +  + +  +  D +   F   T + +L
Sbjct: 507 AMIEKEPITVVISEKGWI--------RTLKGHVQDVTNLAFKQGDQLHLSFHAETTSKIL 558

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G  Y     +LP G  +  G+ +  +L +++ + I +      +        ++ 
Sbjct: 559 IFTSGGKFYTLGADKLPGG--RGHGEPIRLMLDMDETQEIISAFVHDPERK------LLM 610

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T        +  D I   R GK  + + +  + +        + + +     + + FP+
Sbjct: 611 STDGAYGFVVQEKDVIANTRKGKQVLNVTAPAKAVLCVPAIG-DYVAVIGHNRKLLTFPL 669

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + I V       GVR      G     ++ +   D++       +    A  R+     E
Sbjct: 670 AQIAVMT--RGRGVRLQRYRDG----GISDIKTFDSEEG-----LTWTDASGRIFKRTLE 718

Query: 771 EITSLKNDSSVEGNIS 786
           E+   + D    G + 
Sbjct: 719 EMQDWRGDRGQAGRLP 734


>gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866]
          Length = 747

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 383/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  + R +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASSRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLLFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
          Length = 753

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/778 (31%), Positives = 383/778 (49%), Gaps = 66/778 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  VI  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWAQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRVVIEPKSRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+++Q  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKTFSLTDIQAEAILNMRLRSLRKLEEFEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    IL S +     + +++  V++          RRT+  +         +E
Sbjct: 449 NLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDRLGQSFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y   V +LP G  +  G+ +   + + Q   I  +  +            + 
Sbjct: 561 LLATNGRFYSLDVAKLPGG--RGHGEPIRMFIDMEQDAAIVAVFVYK------GGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFP 709
           A+  G        D +   R GK  + +D  +E  ++    +  + + +  +  + + FP
Sbjct: 613 ASHDGQGFIVGEDDCVGTTRKGKQIINVDMPNEARALTVVGEGSDSVAVIGENRKMLIFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG-----DQVISMAIVLHADADYDERICYMKHMSAQR 762
           +  +         GVR      G        +S   +   D+   E    MK ++  R
Sbjct: 673 MDQVPEMT--RGRGVRLQKYKDGGLSDIATFVSKQGLSWRDSAGREFSATMKDLAEWR 728


>gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
 gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
          Length = 736

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/755 (31%), Positives = 393/755 (52%), Gaps = 60/755 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++     +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  ++  +M  I+GPDFPTG +I+ ++  I +AY TGRGS  +
Sbjct: 182 PHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    R     +++  L++ T+L+S   +NM  +     P+   ++ +L+ F++ R+ ++
Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I  E ++L  +     +
Sbjct: 406 -------------MMQRFQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  ++K+E+ +V+ +         RRT   +  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILIISSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D        ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITEILVYKPD------HLLLLASSIGKGFVVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   +SGK  M +      ++       + +    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKSGKQIMNVPDGHTCIACLPVNG-DSVACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            GV      K  +++ + I    D         +K
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNREDGLSWNSGGKVK 706


>gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           L20]
 gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 748

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 388/747 (51%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GS
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ F
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AIL LRL  L  L   +++ E + L  E 
Sbjct: 412 ----------------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +       G+  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L +G  +  ++    D        V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPEGATVQQVLMANSDTK------VLMASDSGYGFICSF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGK 673

Query: 721 SVGVRGIS---LAKGDQVISMAIVLHA 744
              +  IS     +G+++++  +++  
Sbjct: 674 GNKIINISAQAAKEGNELLARLLLVKP 700


>gi|224283379|ref|ZP_03646701.1| DNA topoisomerase IV subunit A [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064619|ref|YP_003971344.1| DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313140533|ref|ZP_07802726.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|310866938|gb|ADP36307.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313133043|gb|EFR50660.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
          Length = 890

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 284/945 (30%), Positives = 445/945 (47%), Gaps = 132/945 (13%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H      + ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   TTHQAYDPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G +I+GR GI+ AY
Sbjct: 185 IAVGMATNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIGRNGIREAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG++  R ++H E  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D
Sbjct: 245 ETGRGTLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAID 304

Query: 302 ESDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR    R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +L+ 
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPHTMGLKEMLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+  L+  
Sbjct: 365 WIDHRRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIA- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L +VQ + IL+LRL RLT + R ++  E + L
Sbjct: 424 -------------------------VFDLDDVQAQYILDLRLRRLTRMSRIELEAERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------ 534
              I+E   IL+S   L  ++  E+     E  TPRRT +++   D              
Sbjct: 459 KRRIEELERILASAQELDRVVVDEMDQAVAEYGTPRRTVLLDEAEDGTLTPVTPHGDDSV 518

Query: 535 -------------------------------------------REDMVVTVSHLGYVKRV 551
                                                       E   V +   G + R 
Sbjct: 519 NAAAMKAAAAAATLSSAEADVAAAAAARKAGEDAAAVAALQIDDEPCTVMLGASGTIARS 578

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--IG 609
             +   A     +  S    +D D +  +F  +T +S    +S G +    V  LP    
Sbjct: 579 TPAALDAWES--RSTSDERTKD-DHIVSIFRTTTRSSYGLVTSAGRLVLAHVVELPALAA 635

Query: 610 SPQ---ARGKALINILSLN------QGERITTIMPFPE-DESSWNNLYVVFATKHGNVRR 659
           SPQ   A G     ++ +        GE +   +P  + D+       +   T+ G V+R
Sbjct: 636 SPQTNVAGGIPADELIGMTESTDPIPGEHVVAAIPMDQRDDDGPTPAPLAIGTRAGVVKR 695

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   ++    I   L   D +L       E+ ++        + F    +R   GR
Sbjct: 696 WNREAPTTMDSWSVID--LKDGDSVLFAADAADEDRLVFIASDSSLLTFDAGNVRP-QGR 752

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI LA+G   I+  +V         +I +           +     +T   +  
Sbjct: 753 TAGGMAGIRLAEGCTAITFNVVPAG------KIAWTYEEGDNGMFSASGAVVLTVAGDKD 806

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI- 838
           ++ G                    +E G  K T    +    R   G+R+    K     
Sbjct: 807 ALPG--------------------TENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNTL 846

Query: 839 -GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             A V ++P      +   ++ G+ + +P  ++R   R   GV +
Sbjct: 847 IFARVGMYP------LHASTEGGSPVELPKPDMR---RDASGVDL 882



 Score = 41.8 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 74/292 (25%), Gaps = 38/292 (13%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +    V     G + R+  +             +    D I+S+   T  +   L T  
Sbjct: 561 DDEPCTVMLGASGTIARSTPAALDAWESRSTSDERTKD-DHIVSIFRTTTRSSYGLVTSA 619

Query: 703 GQCVRFPISAIRVFA----GRNSVGVRGISLA---------KGDQVISMAIVLHADADYD 749
           G+ V   +  +   A       + G+    L           G+ V++   +   D D  
Sbjct: 620 GRLVLAHVVELPALAASPQTNVAGGIPADELIGMTESTDPIPGEHVVAAIPMDQRDDDGP 679

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                     A            T          +            E  ++ ++     
Sbjct: 680 TPAPLAIGTRAGVVKRWNREAPTTMDSWSVIDLKDGDSVLFAADAADEDRLVFIASDSSL 739

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKI------NEIGALVAVFPVNDNDQIILV------- 856
               + + R   R+  G+    +++       N + A    +   + D  +         
Sbjct: 740 LTFDAGNVRPQGRTAGGMAGIRLAEGCTAITFNVVPAGKIAWTYEEGDNGMFSASGAVVL 799

Query: 857 -----------SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                      ++ G     P+       R T GV      K +  +   R+
Sbjct: 800 TVAGDKDALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNTLIFARV 851


>gi|228983129|ref|ZP_04143388.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228777312|gb|EEM25620.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 740

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 258/757 (34%), Positives = 406/757 (53%), Gaps = 28/757 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S + EM++S++ YA+ V+  RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K 
Sbjct: 4   KIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAYKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++A+Y+++ + AQD+     LI+G GNFGSVDGD  AA RYTE R
Sbjct: 64  ARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  ++ DL K  VDFR N+D S +EPVVL A+ PN+LVNGG GIAVGMA   P H 
Sbjct: 124 LSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTPPHG 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +  VVD  +A  D  DID+++L++II  PD+P+G +I  +  +++ Y TG G  VIR   
Sbjct: 184 VNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNELRDLYRTGIGKAVIRAKI 243

Query: 255 HIEKTSGDREQIVVTEI--PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            IE     R+ +VV EI  PY  +K  +  K+  +V EK++ +I ++ DESD+ G R+V+
Sbjct: 244 DIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGIRIVL 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+G   D +LN+LY  T LQS  S   + L    P    L    K +  F++E+  +R
Sbjct: 304 EVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNGVPTTINLKDYCKHYFDFQKEITRKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +YLL+KA+ R  +L GL  A   +D ++ ++R +   + A+  LM+ +  +   K    
Sbjct: 364 YEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTESISFKTKKH 423

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q +AIL++RL +L GL  + +  E   +  E++E   +L 
Sbjct: 424 --------ENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLG 475

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L +IK+ L   K +    RRT I E    +E  + I  ED+ V +   GY K V 
Sbjct: 476 SEKEMLKVIKKYLRGFKKDFGRERRTEIQE-KKTIEYVEEIKEEDVWVLIDKFGYTKSVD 534

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                                        +    + +  F++ G +Y+ K+  +P    +
Sbjct: 535 TISVERSSEETLSEY----------KQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIK 584

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G  +  +  + + E    I    E E+      V+  TK G +++   S+ I  +RS 
Sbjct: 585 DKGVPIQRLGKMKKNEYPLYITTNTELETER----VIMLTKTGLIKQTLCSELIS-SRSV 639

Query: 673 KIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            +A KL+  DE++ +    + + D+L+ +K G  +RF I+ I V   +N+ GV+ +SL +
Sbjct: 640 VVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVL-RKNAKGVKAVSLME 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            D +  + I+   + D  +       +S   R   G 
Sbjct: 699 EDVIEGVYILNENNKDVKQLNGKQIELSKVERKTRGK 735



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 58/107 (54%), Gaps = 5/107 (4%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +L+ + ++ +++ G  K+T   +  IS+R    + AT + + +E+  +  +  V  ++ +
Sbjct: 610 ELETERVIMLTKTGLIKQTLCSEL-ISSR--SVVVATKLEEDDEVIQITPINEV--DEDV 664

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ S KG ++R  +NEI +  +  KGV   S  +++ +  V  + E+
Sbjct: 665 LVFSKKGYILRFSINEIPVLRKNAKGVKAVSLMEEDVIEGVYILNEN 711



 Score = 38.4 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           G T+ + ++  + S E  +SE + + L      +   + +G   +    D        KG
Sbjct: 528 GYTKSVDTISVERSSEETLSEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKG 587

Query: 827 IRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +    + K+ +    + +    +   +++I+++  G + +   +E+ I+SR+   VV   
Sbjct: 588 VPIQRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSEL-ISSRSV--VVATK 644

Query: 885 TAKDERVVSVERIRESEIV 903
             +D+ V+ +  I E +  
Sbjct: 645 LEEDDEVIQITPINEVDED 663


>gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
 gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
          Length = 750

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 247/735 (33%), Positives = 372/735 (50%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKSLIPPEPAE---IHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  VI  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +V+TEIPY V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRVRAKWKQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    +     +++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRLVIEPKSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +  +R  +L G  IA  N+DEV+RIIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+EVQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKTFKLTEVQAEAILNMRLRSLRKLEEMEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL---DMEDE 530
           +L  E+K   ++L+S       + +++ +V+D          RRT   +         +E
Sbjct: 449 NLRGELKGINELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRRRTNFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G+V        R  +      S +  + +D +   F     + VL
Sbjct: 509 AFIEREPVTVVVSEKGWV--------RTLKGHVADLSNLQFKTDDQLGQAFFAENTSKVL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G  Y   V +LP G  +  G+ +   + L+Q   I ++        S      + 
Sbjct: 561 LFASNGKFYSLDVGKLPGG--RGHGEPIRMFIDLDQDASIVSMFV------SKGERKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G     K  D +   R GK  + + +  E     T  Q + + +     + V F +
Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAE-ARAITTVQGDQVAVIGTNHKMVVFGL 671

Query: 711 SAIRVFAGRNSVGVR 725
             +   A     GVR
Sbjct: 672 DQVPEMA--RGRGVR 684


>gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 747

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/740 (32%), Positives = 363/740 (49%), Gaps = 63/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+PT A I+     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG GS+  R     E  +     IV+  +PYQV+ + ++E+IA+ +R K++  + D
Sbjct: 237 AIYETGHGSVRARATYKKEHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLED 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD      V+ + R     A+ ++  L+  T L+  +  N+  +    +P+   L 
Sbjct: 292 IRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+    
Sbjct: 352 QLLSEWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LSE Q   ILE +L +L  L    IR 
Sbjct: 410 -LISR--------------------------FALSEEQAEYILETKLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E  +L  E  + + IL S+++L  +IK EL +   +    R + +V+      +++ + +
Sbjct: 443 EQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARLSPLVQRGAAQAIDETEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E M V +S  G+V        RA +      +G+  RD D +       +   V F  
Sbjct: 503 ASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y   V  LP  S +  G+ L    S   G     +       S+ N    V A+ 
Sbjct: 555 SEGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASADNATRFVLASS 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPIS 711
           HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +  P +
Sbjct: 607 HGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPAT 666

Query: 712 AIRVFAGRNSVGVRGISLAK 731
            +          +  I  AK
Sbjct: 667 EVPELDKGKGNKIIEIPKAK 686


>gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
          Length = 493

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 256/493 (51%), Positives = 341/493 (69%), Gaps = 9/493 (1%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LM
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVN 276
           E I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVN
Sbjct: 181 EHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVS 300

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN
Sbjct: 301 FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 360

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMY 448
           +D ++ +IR +P P  A+  L+   W   ++  +++   D +             DG  Y
Sbjct: 361 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYY 420

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V
Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 480

Query: 509 KDELDTPRRTRIV 521
           +++    RRT I 
Sbjct: 481 REQFGDKRRTEIT 493


>gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 748

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 391/747 (52%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++ +++GPD+PT A +I  +  I   Y  GRGS
Sbjct: 184 DIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E+      +IV++ +P+Q + + ++E++A  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEEG-----EIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      D +++ L+  T L+  + VNM  +    KP    L+ IL  +++F
Sbjct: 299 PIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R ++L GL IA  N+DEV+ IIR    P   + ELM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIRNEDEP---KAELMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++VQ  AIL LRL  L  L    ++ E + L  E 
Sbjct: 412 ----------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E   IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPIEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +        +  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L +G  +  ++       + +   V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPEGATVQQVLM------ANSETKVLMASDSGYGFICTF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALSKGK 673

Query: 721 SVGVRGISLAK---GDQVISMAIVLHA 744
              +  IS A    GD+ ++  +V+  
Sbjct: 674 GNKIINISAAAAKSGDEYLARLLVIKP 700



 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 21/218 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E+  ++ ++ G         I          V+ +S   GD  ++ A         
Sbjct: 499 LTPIEDVTVILSEKGWVRCAKGHDID---------VQALSYRAGDDYLAHARGRSNQPVV 549

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                   +      L S  ++        +  EG   ++    +   E  +L  S+ G+
Sbjct: 550 FLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVL--MANSETKVLMASDSGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G   +  D    N++GK + +   +       L      ++N  ++ +S+ G ++  PV+
Sbjct: 608 GFICTFEDLVSRNKAGKAVISLTENAKVLPPQL---LENDENLSLVAMSNVGRMLVFPVS 664

Query: 869 EIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           E+   S+  KG  I +       + DE +  +  I+ +
Sbjct: 665 ELPALSKG-KGNKIINISAAAAKSGDEYLARLLVIKPT 701


>gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278]
 gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278]
          Length = 750

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 247/735 (33%), Positives = 375/735 (51%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V++ D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKSLIPPEPAE---IHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  VI  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +V+TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRVRAKWKQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    +     +++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRLVIEPKSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +  +R  +L G  IA  N+DEV+RIIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+EVQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKTFKLTEVQAEAILNMRLRSLRKLEEMEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K   ++L S       + +++ +V+D          RRT   +         +E
Sbjct: 449 NLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKRRTNFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G+V        R  +      S +  + +D +   F     + VL
Sbjct: 509 AFIEREPVTVVVSEKGWV--------RTLKGHVADLSNLQFKTDDQLGQSFFAENTSKVL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y   V +LP G  +  G+ +   + L+Q   I ++        +      + 
Sbjct: 561 LFATNGKFYSLDVGKLPGG--RGHGEPIRMFIDLDQDASIVSMFV------TKGERKFLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G     K  D +   R GK  + + +  E  ++ T T +   ++ T   + V F +
Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAICTVTGDQVAVIGTNH-KMVVFGL 671

Query: 711 SAIRVFAGRNSVGVR 725
             +   A     GVR
Sbjct: 672 DQVPEMA--RGRGVR 684


>gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88]
 gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 959

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 301/941 (31%), Positives = 473/941 (50%), Gaps = 90/941 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +  ++  I  + I + M  +YL YA  V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MTKKKL--EIPKDNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ LI+G GN+GS+
Sbjct: 59  YKLAAFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL D+ KD V+   NY  + +EP VL +RYPN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+DG +A IDN +ID   LM+ I+GPD PTG +++G+  +  A
Sbjct: 179 GIAVGLATNIPPHNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILIGKNSLLKA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y  G G + +R  + IE+    R  IV+TE PY+ NK+ +L+ I+E+  EKR    +  I
Sbjct: 239 YENGIGKVSLRAKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYI 298

Query: 297 ADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE KR    +++   L  LY+ T +Q   S NMVAL   KPE   
Sbjct: 299 SDIRDESDRNGIRAVIEFKRSTDREIVEKTLKYLYKNTDMQINISFNMVALANGKPEVMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ++  +V  ++EVV RR++  L  A +R H++ G   A+  +DE+++ IR S + + A
Sbjct: 359 LKTMIYHYVEHQKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             ++VQ+ AILEL L RLTGL     
Sbjct: 419 SKNLIDK--------------------------FNFTKVQSEAILELMLYRLTGLEVTSF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           + E   L  +IK    IL     LL +IK EL  V+++    R+T I+  +    ++ ED
Sbjct: 453 KKEHKELEKKIKALKKILQHEEELLKVIKFELEEVREKYGDKRKTLIIKDDEKAKIDIED 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ E+ V+T+S  G+ KRV +  Y    R       +  R+ D+   L   ST  +VL 
Sbjct: 513 LIIDEETVITISKEGFCKRVSVKSY---NRSNSDIEDIEYREGDYNKFLLEGSTKDNVLI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVV 649
           F++ G +Y  KV  +P    + RG  L   +       E I  I    +  +  +    +
Sbjct: 570 FTNKGNMYSTKVINIPEKRWKDRGIRLDETIKTIDLNEEEIIDIYVVSKFTTQND---FI 626

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLG--- 703
           F T  G +++  L D  + N S  +A+KL   +E++ V+      +E  + L+TK+G   
Sbjct: 627 FITSRGGIKKTSL-DKFETNYSKLMALKLREDEEVIDVKLMDKNREEKFLKLSTKMGLDF 685

Query: 704 --------------------------QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
                                     + ++         A  +    +  S+ KG++   
Sbjct: 686 TIEEPTINEEDRNILSNIFCSIGYKDKVIKSQFEDKNELAIFSLNVNKNGSIIKGNRKNK 745

Query: 738 MAIVLHADADYD-----ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +I L  D++       +    +K      + + G    I  L      +  I      +
Sbjct: 746 SSINLEVDSNKKLLIFLKNGEVIKINCNMLQNLEGKAINIFDLLEKYEQKNEIINVLPFD 805

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF--PVNDN 850
              ++  I  +++ G  K+T   +F+     G           ++   ++ V     ++ 
Sbjct: 806 YNDEDLEIYYLTKFGLVKKTLLKEFQ-----GDYFITIGYKFRHKEDEIITVDFGKAHEE 860

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             II++S+KG  IR   N I    +   GV+  +  K+++V
Sbjct: 861 KDIIIISEKGMCIRFSKNSINPVGKIASGVMGINLKKEDKV 901



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 122/332 (36%), Gaps = 23/332 (6%)

Query: 416 ELMQRSWNASDIK--DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + ++ W    I+  + I  ID +   I     +     Q   I       +     D  
Sbjct: 583 NIPEKRWKDRGIRLDETIKTIDLNEEEIIDIYVVSKFTTQNDFIFITSRGGIKKTSLDKF 642

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
               + L        + +     +    +++ L +  ++              + +ED  
Sbjct: 643 ETNYSKLMALKLREDEEVIDVKLMDKNREEKFLKLSTKMGLD----FTIEEPTINEEDRN 698

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGG-----KGRSGVVMRDEDFVTDL--FIVSTH 586
           +  ++  ++   GY  +V  S +  +           ++G +++            V ++
Sbjct: 699 ILSNIFCSI---GYKDKVIKSQFEDKNELAIFSLNVNKNGSIIKGNRKNKSSINLEVDSN 755

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L F   G V K     L        GKA+     L + E+   I+     + +  +L
Sbjct: 756 KKLLIFLKNGEVIKINCNMLQ----NLEGKAINIFDLLEKYEQKNEIINVLPFDYNDEDL 811

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQ 704
            + + TK G V++  L +F                DEI++V+     +E DI++ ++ G 
Sbjct: 812 EIYYLTKFGLVKKTLLKEFQGDYFITIGYKFRHKEDEIITVDFGKAHEEKDIIIISEKGM 871

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           C+RF  ++I     + + GV GI+L K D+V+
Sbjct: 872 CIRFSKNSINPVG-KIASGVMGINLKKEDKVL 902


>gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 748

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 389/747 (52%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GS
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ F
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLTF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q+ AIL LRL  L  L   +++ E + L  E 
Sbjct: 412 ----------------------FNLSEAQSEAILNLRLRHLAKLEEHELQAEKSQLEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +       G+  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L +G  +  ++    D        V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPEGATVQQVLMANSDTK------VLMASDSGYGFICSF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FPI+ +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLIENDAELSLVAMSSVGRMLVFPITELPQLSKGK 673

Query: 721 SVGVRGIS---LAKGDQVISMAIVLHA 744
              +  IS     +G+++++  +++  
Sbjct: 674 GNKIINISAQAAKEGNELLARLLLVKP 700


>gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans
           ORS 571]
          Length = 745

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 380/742 (51%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M    +         +  V +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL  M
Sbjct: 1   MATKTLPPG---GGSVEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+V+GK+HPHG+ A+YDAL R+AQD++ R  L++GQGNFG+V
Sbjct: 58  RQLKLDPGSGFKKCARVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD +  D VDFRP YDGS +EPVVL A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTEARLTETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E++D  + ++++P+     L++ + GPDFPTG +++    G   
Sbjct: 178 GIAVGMATSIPPHNAAELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+  +R   H E+T      +VVTEIPY V K+ ++EKIAEL+ +K++  +AD+
Sbjct: 238 AYATGRGAFRVRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R   A+V++  L++ T L+S  S+NM  L   + P+  +L   L
Sbjct: 298 RDESAEDIRLVLEPRARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADAL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R EV++RR++  L++   R  VL G  IA  NLDEV+RIIR    P+       
Sbjct: 358 REWLDHRREVLLRRSRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPK------- 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                 +    T  L+++Q  +IL +RL  L  L   ++R E  
Sbjct: 411 ----------------------VELMRTFELTDLQAESILNMRLRSLRRLEEMELRKEHA 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---EGLLDMEDE 530
           +L  E ++   +++S +     I +E+   +           RRT      +       E
Sbjct: 449 ALTKEQEQLNKLVASEAAQWKAIGKEIRETRKTYGPDTEIGRRRTDFAVPPDVHESAFTE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + + +S  G++        RA +      +GV  + +D +   F   T + ++
Sbjct: 509 ALVEREPITIVMSAKGWI--------RALKGHVADVTGVPFKGDDTLAHAFYAETTSKIM 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             SS G  +     +LP G  +  G+ +  ++ L Q   I ++              ++ 
Sbjct: 561 VLSSNGRFFTLDAAKLPGG--RGHGEPVRLMIELEQEAEIVSVFAHR------PGGKLIV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A++ G        D +   R GK  + +D+ D  +        + + +     + + FPI
Sbjct: 613 ASREGRGFVVAEDDCLANTRKGKQVLGVDAPDAAVLAVPA-DGDTVAVIGDNRKLLLFPI 671

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +         GVR     +G
Sbjct: 672 AQVPEMT--RGRGVRLQRYKEG 691


>gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
 gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
          Length = 737

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 242/739 (32%), Positives = 375/739 (50%), Gaps = 60/739 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H       E   I    +   +   YL YA++ I  RA+PD+RDG KPVHRRIL+ M
Sbjct: 1   MTIHAPPP---EGGRIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QM +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  L++GQGNFG++
Sbjct: 58  HQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTEC+L  AA  LLD + +D+VDFR  YD   +EPVVL A +PN+L NG  
Sbjct: 118 DGDSAAAMRYTECKLTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+GE++D C  ++D P+     L++++ GPDFPTG V + G   I +
Sbjct: 178 GIAVGMATSIPPHNVGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R     E       +I+VTE+PYQV K+ ++E +A+L+  K+   + D+
Sbjct: 238 AYETGRGGVRLRARWETEDLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      ++    R    ++++  L++ + L+  F +NM  L+    P    L   L
Sbjct: 298 RDESAEDIRLILEPKNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+++ + +   R H+L GL I   N+DEV+RI+R    P+     L+
Sbjct: 358 RAFLDHRREVLNRRSQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQPKAV---LI 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ   IL+ RL +L  L    I  E  
Sbjct: 415 AR--------------------------FGLTEVQADFILDTRLRQLARLEEMTIEKEFK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVR 535
           +L  E+     + SS  +    I +EL +V+  L +PRRT I + +     +  E  I R
Sbjct: 449 ALSEELAHLQALTSSEGKQWKAISKELEAVRKALISPRRTTIADAVDTSAFVAPEAFIPR 508

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G++        RA +   +  S +  ++ D +  L    T   +L  +S 
Sbjct: 509 EAITVILSERGWI--------RAAKGKVEDPSELKFKEGDQLAYLVPAYTTDKLLVGASD 560

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G ++     +L   S +  G+ L  ++ L++   I  ++             ++ A+K G
Sbjct: 561 GRIFTIGADKL--ASGRGHGEPLRLMIDLDEKAEIINVLA------HQPGGKLLIASKAG 612

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAI 713
                   D +   R GK  +     D +  +        + +    +  + + FP+  +
Sbjct: 613 YGFIAPEDDTLAQKRGGKQVLN---GDMLAMLRIPQTPTADHVATIGENIKTLIFPLDEL 669

Query: 714 RVFAGRNSVGVRGISLAKG 732
                    GVR  +  +G
Sbjct: 670 PEMG--RGKGVRLQNFKQG 686



 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 17/166 (10%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNI 785
           +   +GDQ+  +      D                 +L SG    E   L  D   +  I
Sbjct: 534 LKFKEGDQLAYLVPAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEI 593

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +   K   +L  S+ G+G      D     R GK +           G ++A+ 
Sbjct: 594 INVLAHQPGGK---LLIASKAGYGFIAPEDDTLAQKRGGKQVL---------NGDMLAML 641

Query: 846 PVNDN---DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +      D +  + +    +  P++E+    R  KGV + +  + 
Sbjct: 642 RIPQTPTADHVATIGENIKTLIFPLDELPEMGRG-KGVRLQNFKQG 686


>gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275]
          Length = 1278

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 361/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 262/534 (49%), Positives = 360/534 (67%), Gaps = 27/534 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 7   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 67  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 187 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 247 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 307 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 367 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 418 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTV 542
           IL+   R+L II++EL  +K +    RRT I+ G L  +EDED I  E++ +T+
Sbjct: 461 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITL 514


>gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
 gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
          Length = 747

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/731 (32%), Positives = 378/731 (51%), Gaps = 61/731 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    V ++DNP   L  ++++++GPD+PT A +I  R+ I   Y  GRGS
Sbjct: 184 DIPPHNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQGRGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E+ +     IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVI--ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++          D +++ L+  T L+  + +NM  +    KP    L+ IL  ++AF
Sbjct: 299 PIRIVLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDSKPAVKNLLTILTEWLAF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  + L+K   R H+L GL IA  NLDEV+ IIR   NP   + EL+ R    
Sbjct: 359 RRTTVTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNP---KAELIAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q  AIL LRL  L  L   +++ E   L  E 
Sbjct: 412 ----------------------FQLSDEQAEAILNLRLRHLAKLEEHELKAEQQKLEEER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
           +    IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    E + V +
Sbjct: 450 EHLQGILGSERRLNNLIKKEIEADAKAFASPRRSPLVERAEAKAISESDLTPTEPVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V+         Q            +  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWVRCAKGHDIDVQNLS--------YKAGDSYLAHAYGKSNQPVVFIDSTGRSYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ +   +SL  G  +  ++   E      +  V+ A+  G     + 
Sbjct: 562 PLSLP--SARSQGEPITGKISLPDGATVQCVLMAEE------SRKVLMASDSGYGFICQF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +     +EN ++  +  G+ + FP+S +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVSELPELS--K 671

Query: 721 SVGVRGISLAK 731
             G + I+++ 
Sbjct: 672 GKGNKIINISA 682


>gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
 gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
          Length = 767

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/799 (29%), Positives = 376/799 (47%), Gaps = 77/799 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPIGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 562 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 615

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
             +     + + +   G     KL+D +   ++GK+ M +DS + +L             
Sbjct: 616 --TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SLA+G  +  + +    +       
Sbjct: 674 DCKVVLASSNHRLLAFSIGELKVMP--KGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVG 731

Query: 753 CYMKHMSAQRRLISGDTEE 771
                   + R+   D + 
Sbjct: 732 RRGAEHQEKLRIADIDGKR 750


>gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
 gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
          Length = 750

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 244/743 (32%), Positives = 388/743 (52%), Gaps = 62/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +         GI  +++ D ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MGQEVTPPP----SGIEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++  + + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  LI+GQGNFG+V
Sbjct: 57  RLLKLDPGQGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD L +D VD+R  YDG  +EP+VL   +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARMTDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I NPD ++D L+E I+GPDFPTG +++   G I+ 
Sbjct: 177 GIAVGMATSIPPHNAFELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIRE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGS  +R    +E+    +  IVVTEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 237 AYATGRGSFRVRARWEVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   +   A++++  L++ T L++ FS+NM  L  G  P    +  +L
Sbjct: 297 RDESAEDIRVVLVPRSKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+ V+VRR+++ L +   R  VL G  IA  NLDEV+RIIR   +   A+  L+
Sbjct: 357 REWLDHRKVVLVRRSEHRLGQINHRLEVLAGYLIAYLNLDEVIRIIREEDD---AKASLI 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                          T  L++VQ  AIL +RL  L  L   +IR E +
Sbjct: 414 R--------------------------TFELTDVQAEAILNMRLRSLRKLEEFEIRKEHD 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD--MEDED 531
            L  E  +   +L S +R    I +E+  +            RRT   E      ++ + 
Sbjct: 448 KLTDEKDQLTKLLGSDARQWTKISKEIGEIAKVYGPETEIGKRRTDKAEAPEADLVDIQQ 507

Query: 532 CIVR-EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            ++  E + V +S  G++        RA +      S +  +  D +   F   T   +L
Sbjct: 508 AMIEKEPITVIISEKGWI--------RALKGHQADLSSLSFKQGDKLKLSFHAETTDKIL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G  +     RLP G  +  G+ +  ++ +++ + + +               ++ 
Sbjct: 560 VFSTGGKFFTLGADRLPGG--RGHGEPIRLMVEMDEAQDVVSAFVHK------PGRNLLL 611

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +            D +   R GK  + L +  E  ++      + + +  +  + + FP+
Sbjct: 612 SNNEARGFVVSEDDVVANTRKGKQVLNLTAPAE-AALCVDATGDHVAIIGENRKLLVFPL 670

Query: 711 SAIRVFAGRNSVGVRGISLAKGD 733
           + I         GVR      G+
Sbjct: 671 AQIAQMG--RGRGVRLQRYRDGN 691


>gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Thiomonas sp. 3As]
          Length = 777

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 252/825 (30%), Positives = 391/825 (47%), Gaps = 79/825 (9%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+E   +  D   E    S+++ D  + +YL YAI+V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+G++HPHG+ A YDAL R++Q+++ R  LI+GQGNFGS
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++   T DF PNYDGS  EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT IP HNL EV   CVA++ NP ++L   + ++ GPDF TG   I     I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA- 297
            AYA GRGS+ +R    +E+ +  + Q+V+ E+P+  +   +LE+I EL   K       
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 298 -----------------DLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFS 338
                             +RDES R+    ++   R +  D    +N L   TSL++   
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    KP +  L+ IL+ +VA+R + V RR+K+ L +   R H+L G    + NL
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+  IR S +P  A   LM R                            L+E+Q   I
Sbjct: 421 DEVIETIRNSDDPRPA---LMAR--------------------------FDLTELQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L++RL +L  L    I  EL +   E  E   +L+    +   I  E+ +   +    RR
Sbjct: 452 LDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTRRIISEIEADAKQFGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I      + +   +V E + V VS  G++        R Q+  G   S +  +  D +
Sbjct: 512 TLIQAEQRAVAE-VKVVDEAVTVIVSQKGWL--------RTQKGHGLVLSALTFKPGDAL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   +   ++   S G  Y   V  LP G  +  G+ + + + L  G +    +   
Sbjct: 563 YATFECRSVDPLVVLGSDGRAYSIDVADLPGG--RGDGQPVTSFIELAPGTQALHYLA-- 618

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE-----ILSVET-CT 691
                     ++  T  G     ++ D +   R+GK  M L+  D      +L ++   +
Sbjct: 619 ----GARTTALLLWTAQGFGFVTRIGDALSRQRAGKTFMTLEDGDVPQRPLVLGIDVGDS 674

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
               + L +  G+ + +  + ++      S G RG++L + D   ++  + H   + +  
Sbjct: 675 PTGRLALLSTGGRLLIYAAAEVKAL----SRGGRGVTLMEQDAKEALLSIAHLVGEREAL 730

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +   K      R  S    +        +  G   E   +  +L 
Sbjct: 731 LVSGKGRGGTERSTSLSGTQQALYLGKRAKRGRKLEIAFKPERLD 775



 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 11/172 (6%)

Query: 735 VISMAIVLHADADYDERICY----MKHMSAQRRLISGDTEEITSLKNDSS------VEGN 784
           V+S       DA Y    C     +  + +  R  S D  ++   + D            
Sbjct: 550 VLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSIDVADLPGGRGDGQPVTSFIELAP 609

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            ++        +   +L  + +GFG  T   D     R+GK     +   + +   ++ +
Sbjct: 610 GTQALHYLAGARTTALLLWTAQGFGFVTRIGDALSRQRAGKTFMTLEDGDVPQRPLVLGI 669

Query: 845 FPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              +    ++ L+S  G L+     E++  SR  +GV +      E ++S+ 
Sbjct: 670 DVGDSPTGRLALLSTGGRLLIYAAAEVKALSRGGRGVTLMEQDAKEALLSIA 721


>gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
 gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
          Length = 739

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/740 (31%), Positives = 375/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L + +  LL +LG+ TV+++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSQYSEVLLSELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV+ G +A+I NP+     L E I GPD PT A +I  +  +    +TGRGS  +
Sbjct: 186 PHNLREVIKGTIALIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  +E     + +I++TE+PYQV+ + ++ +IA+ ++ K++  ++DLRDESD      
Sbjct: 246 RAVYTVE-----KNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHVNPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++       AD +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R+E
Sbjct: 301 LVIVLRSNRVDADTVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRKILLEWIGIRKE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK   R H+L GL IA  ++D V+RIIR   +P+                
Sbjct: 361 TVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDHPKAV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  + E Q  AILEL+L  L  L   +IR E + L       
Sbjct: 407 ---------------LIQTFKIDETQAEAILELKLRHLAKLQEMEIRQEQDELSARAALI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L++   L  +I  EL     +    RR+ IV  EG + M ++D I  E + V +S  
Sbjct: 452 REQLANPESLKNLIIGELKEDAKKFGDERRSPIVEREGAVQMREQDLIPAEPVTVILSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R+ +        +  R  D         ++  V      G  Y   +  
Sbjct: 512 GWI--------RSAKGADVDAEKLNYRAGDQYLSHASGKSNQRVYILDETGRSYALAINS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + LS   G     I+   +D+       ++  +  G   + +    
Sbjct: 564 LP--SARGLGEPLSSKLSPANGVSFIQILVEEDDQE------IIAISSKGYGFKTQAKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +    + L +      + + L T  G+ +  P+S   + +     G +
Sbjct: 616 DTNAKAGKAFLSIPEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSE--LPSLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L + +Q++SM  +   +
Sbjct: 674 LIQLEQDEQLLSMTTLNLNE 693



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 58/111 (52%), Gaps = 6/111 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q I+ +S KG+G +T +     + ++GK   +       E G  + +    D   
Sbjct: 591 VEEDDQEIIAISSKGYGFKTQAKQLDTNAKAGKAFLSIP-----EGGKALPLLVNPDCSH 645

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + L++D G L+ +PV+E+   ++  KG  +    +DE+++S+  +  +EI+
Sbjct: 646 LALLTDTGRLLVLPVSELPSLNKG-KGNKLIQLEQDEQLLSMTTLNLNEII 695


>gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 764

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/818 (29%), Positives = 391/818 (47%), Gaps = 66/818 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSD----TDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ EV   C  ++D P  +L+ L+E++  PD+PT A +I  +  I 
Sbjct: 177 TGIAVGMATDIPPHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADIH 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E        IV+T +P+Q +   +LE+IA  +  K++  IAD
Sbjct: 237 KIYKTGRGSIKMRAVYTEEHGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       A+ ++  L+  T L+  + VN+  L    +P+   L 
Sbjct: 292 LRDESDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+    
Sbjct: 352 CILSEWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            L++ Q  AILEL+L  L  L    IR 
Sbjct: 410 -LMER--------------------------FDLTDTQAEAILELKLRHLAKLEEFKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   IL S  R+  ++K+E+    +     RR+ ++E      + ++D I
Sbjct: 443 EQDELAKERDKLAQILGSERRMSTLLKKEIQEAAEMYGDDRRSPVIERSEAKALNEKDLI 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+         R  +       G+  R  D         ++   +F  
Sbjct: 503 PSESVTVVLSDKGWA--------RVGKGHDLDVQGLNYRSGDGFRASARGKSNQPAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      LP  S +++G+ +    +L  G     ++   EDE       ++ A+ 
Sbjct: 555 SAGRAFATDAHSLP--SARSQGEPMTGRFNLTPGANFEHVV-MSEDEQ-----VLLMASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + +     +LS         +  +  +  G+ + FP+ 
Sbjct: 607 AGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVASDYCMAISNEGRMLLFPLR 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +   +      +  I    +   ++ + +  V+   +         K       L    
Sbjct: 667 DLPKLSKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLHAGKRKLTLKPSDLEHYH 726

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            E              + E   +     ++ I  ++E+
Sbjct: 727 GERGRRGNKLPRGLQRVDEAVVELTPQDDEPIEAINEE 764



 Score = 44.9 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 19/121 (15%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +      +   EQ +L  S+ G+G  T   D    N++GK + +       + G L++  
Sbjct: 587 ANFEHVVMSEDEQVLLMASDAGYGFITDFKDLVSKNKNGKALVSV-----PKGGILLSPI 641

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESE 901
            VND  +D  + +S++G ++  P+ ++   S+           K  +++S+   +++  E
Sbjct: 642 RVNDVASDYCMAISNEGRMLLFPLRDLPKLSK----------GKGNKIISIPGAKVQARE 691

Query: 902 I 902
            
Sbjct: 692 E 692


>gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
 gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
          Length = 762

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/766 (30%), Positives = 393/766 (51%), Gaps = 69/766 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +     + + + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDITTPASVIPNEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LI GQGN+GS 
Sbjct: 61  SELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSP 120

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE ++   A+ LL +LG+ TVD++ N+DGS QEPV L AR PN+L+NG 
Sbjct: 121 DDPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNGT 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EVV   + ++ NPD+ +  L + I  PD PT A +I  +  ++
Sbjct: 181 TGIAVGMATDIPPHNLNEVVRAAIRLLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDLQ 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS  +R V H+     ++  +++  +PYQV+   + E+IA+L+ +K++  + D
Sbjct: 241 AMYETGRGSYKMRAVYHV--DQQEKNLVIIDALPYQVSGNKVQEQIAKLMMDKKLPWVVD 298

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           + DESD +    ++   R    DV  +++ L+  T L+S + VNM  +    KP+   L 
Sbjct: 299 IHDESDHENACRIVLELRSTRVDVARVMSHLFASTDLESSYRVNMNMIGLNGKPQVKNLK 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ ++  R +VV RR ++ L+K   R H+L GL IA  N+DEV+RIIR   +P   ++
Sbjct: 359 EVLEEWLISRRQVVTRRVQFRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDP---KQ 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ELM                          G   LS++Q  AIL++RL +L  L   ++R+
Sbjct: 416 ELM--------------------------GKYDLSDIQANAILDIRLRQLARLEEIELRS 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCI 533
           E ++L  E     ++L +   L  ++ +EL +   E    R + +V  E    +++ D +
Sbjct: 450 EKDALEAERATLQELLDNPESLTQLMIEELEADMKEHGNDRMSSVVEREEATALKESDLV 509

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E +   +S  G++        RA +       G+  R  D         ++  +    
Sbjct: 510 PSEPITAVLSKAGWI--------RAAKGHDVDAKGMSYRSGDSYQAHVHSKSNEKIYIMD 561

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y  +   L   S + +G  L ++L    G     ++   +D+       ++ A+ 
Sbjct: 562 STGRSYSIEAHTL--ASARGQGDPLTSVLKPPAGASFEQLLAGADDQR------IILASS 613

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-------------DILLTT 700
            G    N L +     ++GK  +  D+  ++L+V T  + +              I + T
Sbjct: 614 QGYGFINTLGNLETNQKAGKNVINFDADAKLLTVATIDKTDSETPDDAQALTQNQIAVVT 673

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             G  + F +    +   +   G + I+L  G++V+++  +   D+
Sbjct: 674 SAGYLLIFGVDE--LPEQQRGKGNKLINLKAGEEVLAVIALNSHDS 717



 Score = 45.3 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 15/188 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G     +G+S   GD   +       +  Y        +      L S   +    
Sbjct: 525 RAAKGHDVDAKGMSYRSGDSYQAHVHSKSNEKIYIMDSTGRSYSIEAHTLASARGQGDPL 584

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E+        +Q I+  S +G+G   +  +   + ++GK +   D   
Sbjct: 585 TSVLKPPAGASFEQLLA--GADDQRIILASSQGYGFINTLGNLETNQKAGKNVINFDADA 642

Query: 835 INEIGALVAVFPVNDND--------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                A +        D        QI +V+  G L+   V+E+    R  KG  + +  
Sbjct: 643 KLLTVATIDKTDSETPDDAQALTQNQIAVVTSAGYLLIFGVDELPEQQRG-KGNKLINLK 701

Query: 887 KDERVVSV 894
             E V++V
Sbjct: 702 AGEEVLAV 709


>gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
 gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
          Length = 747

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/747 (31%), Positives = 383/747 (51%), Gaps = 61/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+E+     +  + R +++V  E    + + D    E + V +S +G
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASSRMSQLVEREEAKMISESDMTPAEPVTVILSEMG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R  +        +  +  D         ++ +V+F  S G  Y      L
Sbjct: 513 WV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I
Sbjct: 565 P--SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLI 616

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      + 
Sbjct: 617 ARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMI 676

Query: 726 GI---SLAKGDQVISMAIVLHADADYD 749
            I   +     ++++  +++   A  +
Sbjct: 677 TIPAANAKDRSELLTKLLLISDQASLE 703


>gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
 gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
          Length = 738

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/768 (32%), Positives = 392/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I+ P  +++ +M  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE++ IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------IMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E       ++    I +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTFTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 736

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 238/738 (32%), Positives = 382/738 (51%), Gaps = 62/738 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K AR  
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA RYTE +L K
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSK 120

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E
Sbjct: 121 MAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINE 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           + +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GSI +R V   
Sbjct: 181 LAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAVWKK 240

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E       +IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +    ++ + R
Sbjct: 241 EDG-----EIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVPR 295

Query: 317 GA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
                 + +++ L+  T L+  + VNM  +    KP    L  IL  ++ FR   V RR 
Sbjct: 296 SNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTTVTRRL 355

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R             
Sbjct: 356 NYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR------------- 399

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AIL LRL  L  L   +++ E + L  E  E    L S
Sbjct: 400 -------------FNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGS 446

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             RL  +IK+E+ +      +PR + +VE      + + D    ED+ V +S  G+V   
Sbjct: 447 ERRLNTLIKKEIQADAKAFASPRHSPLVERAEAKAISESDLTPTEDVTVILSEKGWV--- 503

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +       G+  R  D         ++  V+F  S G  Y      LP  S 
Sbjct: 504 -----RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLP--SA 556

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +++G+ L   ++L  G  +  ++    D        V+ A+  G        D +  N++
Sbjct: 557 RSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFICSFEDLVSRNKA 610

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRNSVGVRGIS- 728
           GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +      +  IS 
Sbjct: 611 GKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGKGNKIINISA 670

Query: 729 --LAKGDQVISMAIVLHA 744
               +G+++++  +++  
Sbjct: 671 QAAKEGNELLARLLLVKP 688


>gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 756

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/752 (32%), Positives = 392/752 (52%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ E+ D  + +IDNP  +L  +M  ++GPD+PT A I+  +  ++  Y TGR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E        IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGGD-----IVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D ++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E   L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQEELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +       G+  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSDKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQQAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++N G  I  ++   ED+        +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNINAGTNIRHVVMGEEDQ------LWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  NRSGK  + L    E+++ +T +    ++IL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEILAITNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++++S  + L   A 
Sbjct: 672 GKGNKIINIPAAKAKEREEMVSHLMSLPQGAS 703



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +  ++Q  L  S+ G+G      D    NRSGK +        N         
Sbjct: 585 TNIRHVVMGEEDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTL---PQNSEVMTPDTI 641

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
              DND+I+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 642 SNLDNDEILAITNQGRMLLFPIKDLPQLGKG-KGNKIINI 680


>gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001]
 gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001]
          Length = 748

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/735 (33%), Positives = 371/735 (50%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPP---PGDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFRP+Y+G  +EPVVL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG + I     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L++   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 415 AR--------------------------FELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV---EGLLDMEDE 530
           +L  E +    +L S       I +++ +VK           RRT +    +        
Sbjct: 449 ALTQEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      SGV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVADLSGVTFKGDDTLKVSFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G  +  G  +  ++ L+ G  I   +P+  +        ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK------LLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G          +   R GK  + LD      ++    + + I + +     + FP 
Sbjct: 613 AGSDGRGFIAPSDALVANTRKGKAILGLDEGTS-ATLLVPAEGDHIAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVR 725
           S +   +     GVR
Sbjct: 672 SEVTELS--RGKGVR 684


>gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
 gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
          Length = 750

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/728 (32%), Positives = 369/728 (50%), Gaps = 55/728 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI        +   YL YA++ I  R++PD+RDGLKPVHRR+L+ M  + ++    Y KC
Sbjct: 12  GILDAPFDSALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLKLDPAAGYKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  AA RYTE R
Sbjct: 72  ARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  L+D L +D V +RP Y+G  QEP +    +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTQVAIDLMDGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGASGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGV 253
             E++D  + V+D+PD D DA++  ++GPDFPTG +++    I + +Y TGRG   +R  
Sbjct: 192 AAELLDAAIHVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILRESYTTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+  G   QIVV+EIPY V K  ++E+IA L+ +K++  +AD+RDESD Q   V+  
Sbjct: 252 WEIEREKGGGWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILADVRDESDAQVRIVLEP 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             R     V+++ L+R++ L++  S+N+  L+    P   +L   L A+V  +  V+ RR
Sbjct: 312 RSRTVDPQVLMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREALAAWVEHQFVVLRRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K  DR  +L G  +A  NLD V+ IIR    P+                     
Sbjct: 372 SEHRLGKIADRIELLDGYLVAYLNLDRVIEIIRTEDEPKAV------------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q  AIL +RL  L  L   +IR E + L  E ++   +L 
Sbjct: 413 ----------MIEEFRLTDRQAEAILNMRLRSLRRLEEFEIRGERDKLDKEREQLTQLLG 462

Query: 493 SRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
           S  R    +K++L  ++D          RRT I E     D+  E  I RE + V +S  
Sbjct: 463 SEQRQRTRMKKDLGKIRDRYGLETILGARRTLIEEAAPTRDIPLEAMIEREPITVILSQR 522

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++ +   V  A     K       ++ D     F   T   +L  ++ G  +     +
Sbjct: 523 GWIRAMKGHVDLASAETAK------FKEGDGPAFAFHAQTTDKLLLAAANGRFFTLAADK 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G  +  G+ +  ++ L+    I   +P      +     ++ A   G       +D 
Sbjct: 577 LPGG--RGFGEPVRAMIDLDGSIGIVGFLP------AARAAKLLVAASDGRGFIVPAADT 628

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           I   R GK  +   +   +  V     +++ +       + + FP++     +     GV
Sbjct: 629 IAETRKGKTVLTPRAGASLKVVRPVGAEDDYVAAIGDNRKLLVFPLTEFVELS--RGTGV 686

Query: 725 RGISLAKG 732
           +      G
Sbjct: 687 QLQRYRDG 694


>gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 748

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 387/747 (51%), Gaps = 62/747 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA 
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAM 123

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT
Sbjct: 124 RYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMAT 183

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+ +  V +++NP   L  LM +++GPD+PT A +I  +  I   Y  G+GS
Sbjct: 184 DIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGS 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V   E       +IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD + 
Sbjct: 244 IKMRAVWKKEDG-----EIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHEN 298

Query: 308 YRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
              ++ + R      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ F
Sbjct: 299 PIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTF 358

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA   LM R    
Sbjct: 359 RRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---LMAR---- 411

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q+ AIL LRL  L  L   +++ E + L  E 
Sbjct: 412 ----------------------FNLSEAQSEAILNLRLRHLAKLEEHELQEEKSQLEKER 449

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTV 542
            E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V +
Sbjct: 450 DELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVIL 509

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        R  +       G+  R  D         ++  V+F  S G  Y   
Sbjct: 510 SEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYALD 561

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  S +++G+ L   ++L  G  +  ++    D        V+ A+  G       
Sbjct: 562 PTSLP--SARSQGEPLTGKITLPDGATVQQVLMANSDTK------VLMASDSGYGFICSF 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRN 720
            D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +   
Sbjct: 614 EDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLSKGK 673

Query: 721 SVGVRGIS---LAKGDQVISMAIVLHA 744
              +  IS     +G+++++  +++  
Sbjct: 674 GNKIINISAQAAKEGNELLARLLLVKP 700


>gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 738

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/768 (32%), Positives = 392/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I+ P  +++ +M  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE++ IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------IMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E       ++    I +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVMFTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1]
 gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1]
          Length = 738

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 229/740 (30%), Positives = 371/740 (50%), Gaps = 60/740 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ TVD++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP+   + L E I  PD PT A +I  +  +     TGRGS   
Sbjct: 186 PHNLREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRGSYRA 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R V HI     D+ +IV+TE+PYQV+ + ++ +IA+ ++ K++  ++D+RDESD +    
Sbjct: 246 RAVYHI-----DKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHRNPTR 300

Query: 311 VIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++ + R    D   +++ L+  T L++ + VN+  +    +P+  ++  IL  ++  R+ 
Sbjct: 301 LVIVLRSNRVDAAAVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRILLEWIEIRKT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK   R H+L GL IA  ++D V++IIR    P+                
Sbjct: 361 TVTRRLQYHLNKIEKRLHILAGLLIAYLDIDTVIKIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR E   L       
Sbjct: 407 ---------------LMQHFNIDEIQAEAILELKLRHLAKLEEMEIRREQEELEARAAVI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV  E  + + ++D +  E + V +S  
Sbjct: 452 REQLGNPESLKNLIINELKEDAKKFGDDRRSPIVQREEAVQIREQDLLPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+++           +G      +  R  D      I  ++  V      G  Y   +  
Sbjct: 512 GWIR---------SAKGEVDAENLNYRAGDQYQSHAIGKSNQRVYVLDETGRSYALSIGN 562

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + LS   G  ++ I  +  DE S     ++  +  G   + +    
Sbjct: 563 LP--SARGLGEPLSSKLSPANG--VSFIQVYINDEESE----LIAVSDAGYGFKTQTKQL 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +    + L + T      + + +  G+ +   +S + +       G +
Sbjct: 615 DTNAKAGKAFLSVPEGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPIL--NKGKGNK 672

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   DQ++SM ++   +
Sbjct: 673 LIQLDDKDQILSMTLLSLNE 692



 Score = 41.8 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 719 RNSVG-VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R++ G V   +L    GDQ  S AI       Y        +  +   L S         
Sbjct: 515 RSAKGEVDAENLNYRAGDQYQSHAIGKSNQRVYVLDETGRSYALSIGNLPSARGLGEPLS 574

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              S   G    +    +  +E  ++ VS+ G+G +T +     + ++GK   +      
Sbjct: 575 SKLSPANGVSFIQVY--INDEESELIAVSDAGYGFKTQTKQLDTNAKAGKAFLSVP---- 628

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            E    + +  + D   + ++S  G L+ V ++E+ I ++  KG  +      ++++S+ 
Sbjct: 629 -EGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPILNKG-KGNKLIQLDDKDQILSMT 686

Query: 896 RIRESEIV 903
            +  +EI+
Sbjct: 687 LLSLNEII 694


>gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110]
 gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110]
          Length = 751

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 245/782 (31%), Positives = 389/782 (49%), Gaps = 66/782 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL++ ++GPDFPTG + +  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +VVTEIP+ V K+ ++EKIAEL  +K++  + D+
Sbjct: 238 AYTTGRGSFRVRARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    +     +++  L+R T L++   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A     
Sbjct: 358 REWLDHLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKAFKLTEVQAEAILNMRLRSLRKLEEMEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    +L+S +     + +++  V+D          RRT   +         +E
Sbjct: 449 NLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRRTTFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V VS  G++        R  +   +  SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVVSDKGWI--------RTMKGHVEDLSGLAFKQDDRLGFAFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y   V +LP G  +  G+ +   + L Q      +        +      + 
Sbjct: 561 LFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQEAAPVALFV------NKGGRKFLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   + GK  + +D  +E  +V      + + +  +  + + FP+
Sbjct: 613 ASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVG-DTVAVIGENRKMLVFPL 671

Query: 711 SAIRVFAGRNSVGVRGISLAKG---DQVI--SMAIVLHADADYDERICYMKHMSAQRRLI 765
             I   A     GVR      G   D V+  + A +   D+   E    MK ++  +   
Sbjct: 672 DQIPEMA--RGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQGTR 729

Query: 766 SG 767
           + 
Sbjct: 730 AD 731


>gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
 gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
          Length = 735

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 233/725 (32%), Positives = 378/725 (52%), Gaps = 63/725 (8%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG++A 
Sbjct: 1   MYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVD 152
           Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL ++ + TVD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSDVLLREVSQGTVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           + PN+DG+ +EP VL AR PN+L+NG  GIAVGMAT++P HNL EV + C+ +++NP+ D
Sbjct: 121 WVPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNSD 180

Query: 213 LDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           LD LM  ++GPD+PTG  I   R  IK  Y TG+G I  R    +E+       IV+ E+
Sbjct: 181 LDDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEEGD-----IVIKEL 235

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA--SADVILNQLYR 329
           P+  + + +LE+IA  ++ K++  I DLRDESD +    ++ + +      + ++  L+ 
Sbjct: 236 PHYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLFA 295

Query: 330 YTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            T L+  + VNM  +     P    L   L  ++ FR +VV +R ++ L+K  +R H+L 
Sbjct: 296 STDLERSYRVNMNVIGLDGLPHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHILE 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL +A  N+DEV+ IIR    P   + ELM R                            
Sbjct: 356 GLLVAFLNIDEVIEIIRNEEKP---KVELMLR--------------------------FG 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+++Q  AILEL+L  L  L    I+ E + L  E K+   +L S  +L  +I +E+   
Sbjct: 387 LTDIQAEAILELKLRHLAKLEEMRIKGEQDELEKERKQLEALLGSDRKLKKLISEEIQEA 446

Query: 509 KDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            D     RRT IVE        +ED +  + + V +S  G++        R+ +      
Sbjct: 447 VDAHGDERRTPIVERKESQAFSEEDLLSNDPVTVVISKQGWI--------RSAKGHDVDP 498

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
             +  +  D  +      ++ +++  +S G  Y  K   LP  S + +G+ +   +SL +
Sbjct: 499 LALNYKSGDEFSISCKGRSNQTLVLLASNGRSYSIKAHTLP--SARGQGEPITGRISLEK 556

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
              I   M       + +N + + A+  G     KL D    N++GK  + L +  ++L+
Sbjct: 557 DVTIVAAM------LNADNTFYLIASDAGYGFIAKLGDLHAKNKAGKATLTLPTSAKVLT 610

Query: 687 VETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK----GDQVISMAI 740
             + +    + I++T+  G+ + F   ++   A      +  I  ++     + V++MA 
Sbjct: 611 PISVSDPASSHIVVTSNEGRMLAFKADSLPQMAKGKGNKMISIQASRAASHEEYVVAMAS 670

Query: 741 VLHAD 745
           VL  D
Sbjct: 671 VLADD 675


>gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/721 (32%), Positives = 368/721 (51%), Gaps = 61/721 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
             MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D+ PN
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           +DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 217 MEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           ++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E        +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISALPHQV 235

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSL 333
           + A +LE+IA  +R K++  + DLRDESD +     V++        D ++N L+  T L
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 334 QSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL +
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A  N+DEV+ IIR    P+ A   LM R                            L+E 
Sbjct: 356 AFLNIDEVIEIIRNEDEPKPA---LMSR--------------------------FGLTET 386

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +     
Sbjct: 387 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446

Query: 513 DTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
              RR+ +   E    M + D +  E + + +S +G+V        R+ +       G+ 
Sbjct: 447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLN 498

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D         ++  V+F  S G  Y      LP  S + +G+ L   L+L  G  +
Sbjct: 499 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATV 556

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             ++   +D+       ++ A+  G       +D +  NR+GK  + L     ++     
Sbjct: 557 DHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 610

Query: 691 TQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADA 746
               + +L  T+ G+ + FP+S +   +      +  I     A+G+  ++   VL   +
Sbjct: 611 EDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS 670

Query: 747 D 747
            
Sbjct: 671 T 671



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 561 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 615

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 616 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 652


>gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 750

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 388/758 (51%), Gaps = 67/758 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I    E +E GI  VS+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVI----EIDEDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ++S R  L++GQGN+GS 
Sbjct: 57  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL A+ PNVL+NG 
Sbjct: 117 DDPKSFAAMRYTESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL EVV   + ++++P   +  L E ++ PDFPT A +I  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDIM 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG++ +R V   E        IVV+ +P+QV+ + +LE+IA  ++ K++  +AD
Sbjct: 237 AMYETGRGALKMRAVWEKEGPD-----IVVSALPHQVSGSKVLEQIAHQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R    +V  ++N L+  T L+  + VN+  +    +P    L 
Sbjct: 292 LRDESDHENPTRLVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDGRPGVKGLD 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ILK ++ FR E V RR +Y L +   R H+L G  +A  N+DEV+ IIR    P+ A  
Sbjct: 352 RILKEWLKFRTETVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+R                            +S+VQ  AIL+L+L  L  L    IR 
Sbjct: 410 -LMKR--------------------------FGISDVQAEAILDLKLRNLAKLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L +E  +   IL S +RL  +IK+EL SV ++    RR+ ++         + D +
Sbjct: 443 EQDELEVERDQLQTILGSAARLKTLIKKELQSVAEKFGDDRRSPLMARGEAQAFSELDLM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + + V +S  G++        RA +      S +  +  D         ++   +   
Sbjct: 503 TADPITVVMSEKGWI--------RAAKGHDIDPSSLSYKSGDGFKMAAKGRSNQPTVILD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S + +G+ +   ++   G     +M   E +        + A+ 
Sbjct: 555 STGRAYTVPSHNLP--SARGQGEPVTGRINPPSGATFEGLMMGDEGD------LYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPIS 711
            G     KL +    N++GK A+ L     ++     ++     +   T  G+ + FP+ 
Sbjct: 607 AGYGFVAKLGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGAWVAAVTNEGRLLVFPLE 666

Query: 712 AIRVFAGRNSVGVRGISLA----KGDQVISMAIVLHAD 745
            +   A      + GI  A    + + VI++ ++   D
Sbjct: 667 DLPQMARGKGNKIIGIPTARVQSREEFVIAVQVLTDKD 704



 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +    L  S+ G+G      + +  N++GKG                A     +   
Sbjct: 594 MGDEGDLYLLASDAGYGFVAKLGELQTKNKAGKGALNL---PKGSGVMQPAAISEAEGAW 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
           +  V+++G L+  P+ ++   +R  KG  I         +++E V++V+ + + +
Sbjct: 651 VAAVTNEGRLLVFPLEDLPQMARG-KGNKIIGIPTARVQSREEFVIAVQVLTDKD 704


>gi|302866556|ref|YP_003835193.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569415|gb|ADL45617.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 829

 Score =  487 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 272/832 (32%), Positives = 395/832 (47%), Gaps = 54/832 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++
Sbjct: 17  DQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMHEQGHRPDR 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK ARI G+VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA R
Sbjct: 77  GHVKSARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAAR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  L  +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 136 YTEARMSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY TGRG + 
Sbjct: 196 MIPHNLGEVVQAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVR 255

Query: 250 IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDRQ 306
           +RG   I    G   R+ I VTE+PY V    ++  I   V + KR+  IAD++D +DR+
Sbjct: 256 MRGRVEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIADVKDLTDRE 315

Query: 307 G-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
              R+V+E K G +   +L  LYR T L+  F VN + L   +P    L  +L  F+A R
Sbjct: 316 NGTRLVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKELLDVFLAHR 375

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RR+ Y   K  +R H++ GL IA+ ++D VV++IR S + + A+  LMQR     
Sbjct: 376 YEVVTRRSSYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGLMQR----- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q   IL+  L RLT   R ++  E   L  EI 
Sbjct: 431 ---------------------FKLSEIQATYILDTPLRRLTKYDRLELEAEQEKLRGEIA 469

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDM 538
           E   IL     L  ++  EL +V  +   PRRT +V+G L       +         +  
Sbjct: 470 ELSKILDDEKVLRKVVSDELAAVVKQFGAPRRTTLVDGDLKEVLAASVPAGPLEVADDPC 529

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G V R             + R        D V  +   +    VL  +S G  
Sbjct: 530 QVILSATGLVARTAAES----EEAAEARRRSGRVKHDAVRAIVHSTARGRVLLVTSAGRA 585

Query: 599 YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +K  V  LP+   Q+       G +   ++ L  GE +  + P     S+  +  +   T
Sbjct: 586 FKIDVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGETVVGLAPLGP--SAQGSPGLALGT 643

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
           + G V+         +       + L   DE++           +   +     +RF  S
Sbjct: 644 RAGVVKVCAPDW--PVRSDEFEVISLRDGDEVIGATWLTDGAETLAFVSSEASLLRFAAS 701

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    +   G+ GI+L  G + +    +   D+ + E +      +  +         
Sbjct: 702 VVRPQGLKGG-GMAGINLPAGARAVFFGAIRTDDSKHGEPMVVTSTGATVKVTPFKAYPA 760

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                     +  +  E    +       +  +  G        D R     
Sbjct: 761 KGRATGGVRAQRFLKGELELSVAWIGPRPVGATATGDPVDLPPADPRRDGSG 812



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 20/230 (8%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGD 733
           D + ++   T    +LL T  G+  +  +  + V   ++       G+     + L  G+
Sbjct: 562 DAVRAIVHSTARGRVLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGE 621

Query: 734 QVISMAIVLHADADYDERICYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEER 789
            V+ +A +  +           +       A    +  D  E+ SL++   V G      
Sbjct: 622 TVVGLAPLGPSAQGSPGLALGTRAGVVKVCAPDWPVRSDEFEVISLRDGDEVIG------ 675

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L    + +  VS +    R ++   R     G G+   ++          A+   + 
Sbjct: 676 ATWLTDGAETLAFVSSEASLLRFAASVVRPQGLKGGGMAGINLPAGARAVFFGAIRTDDS 735

Query: 850 ND-QIILVSDKG-TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + ++V+  G T+   P        RAT GV      K E  +SV  I
Sbjct: 736 KHGEPMVVTSTGATVKVTPFKAYPAKGRATGGVRAQRFLKGELELSVAWI 785


>gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1]
          Length = 740

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 375/720 (52%), Gaps = 58/720 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  
Sbjct: 1   MPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ TVDF+PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E
Sbjct: 121 ISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHI 256
           V D  V ++DNP   LD ++ II+GPDFPT A I+  +  I+  Y TGRGSI +R   H 
Sbjct: 181 VADAAVMLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWHK 240

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E       +I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +    ++ + R
Sbjct: 241 EDG-----EIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVPR 295

Query: 317 GA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
                 D ++  L+  T L+  + VNM  +   +KP    L+ +L  ++ FR   V RR 
Sbjct: 296 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRRL 355

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+K   R H+L GL IA  N+DEV+ IIR    P   ++ LM R             
Sbjct: 356 QHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEP---KQVLMAR------------- 399

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AIL LRL  L  L    ++ E + L  E      IL S
Sbjct: 400 -------------FNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILGS 446

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             RL  +IK+E+     +  +PR +++V  E    + + +    E + V +S +G+V   
Sbjct: 447 ERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTPAEPVTVILSEMGWV--- 503

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +       G+  +  D         ++  V+F  S G  Y      LP  S 
Sbjct: 504 -----RCAKGHDIDPEGLSYKAGDKYLAHACGKSNQPVIFIDSTGRSYALDPLSLP--SA 556

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +++G+ L   L+L  G  I  ++  PE +       ++ A+  G     K  D I  N++
Sbjct: 557 RSQGEPLTGKLTLPAGATIEQVIMEPEKQE------LLMASDAGYGFICKFEDLIARNKA 610

Query: 672 GKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           GK  + L    ++L  ET ++   +L+  T  G+ + FP+  +   +      +  I  A
Sbjct: 611 GKALISLPENAKVLKPETLSESTSLLVSLTSAGRMLIFPVRDLPALSKGKGNKIISIPAA 670


>gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
 gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
          Length = 771

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/759 (30%), Positives = 389/759 (51%), Gaps = 63/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E     ++   +GI  + +    +N+YL Y++NVI  RA+P + DG+KPV RRI++ M
Sbjct: 1   MSETT-DKNKLSLEGIEQMPLERFAENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+VK AR  GEV+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G V
Sbjct: 60  AKLGIGPKAKHVKSARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDV 119

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            D    AA RYTE RL   +  LL DL    VDF PN+DG+ +EP  L AR PN+L+NG 
Sbjct: 120 EDPKSFAAMRYTESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGT 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV +  V +++NP+  ++ LM+ ++GPD+P GA +I  ++ + 
Sbjct: 180 TGIAVGMATDIPPHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLL 239

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+G +  R V  +E     +E IVV+ +P+QV+   + ++IA+L+ +K++  ++D
Sbjct: 240 KMYETGKGIVRQRAVYKVE-----KEGIVVSALPFQVSGGQVEKQIADLMAKKKLPMVSD 294

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           L + SD       +++        D ++N L+  T L+S + VN+  L    KP+   L 
Sbjct: 295 LINASDHNNPCRLIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDGKPQVKNLK 354

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR++ V +R    L+    R H+L GL +   NLDEV+RIIR   NP   + 
Sbjct: 355 QILSEWLVFRQQTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENP---KA 411

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L++R                            L+E Q   ILE +L +L  L    I+ 
Sbjct: 412 KLIER--------------------------FNLTEAQVEYILETKLRQLARLEEMKIKE 445

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E K+   +L S++RL   IK+E+L+        RR  +VE    +   ++D +
Sbjct: 446 EQEKLLAEKKKLESLLGSQARLKTFIKKEILADVKLYGDERRCPVVERSEAVAFSEDDLM 505

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
               + V +S +G+V++   S Y A          +  R  D   D     ++   +F +
Sbjct: 506 PSTPVTVILSKMGWVRQ--ASEYNA------DAEHMTYRAGDGFKDKASGRSNQQAVFIT 557

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  Y   +  LP  S + +G+ L + ++L QGE    ++         +N Y + A+ 
Sbjct: 558 NLGRAYSVDIRELP--SARGQGEPLSSKVNLQQGEFAEYVII------GQSNDYFLLASD 609

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
                  K  D +   + G+  + LD+  ++ +    +    + + + ++ G+ + +   
Sbjct: 610 KAYGFICKYEDILTRLKGGRALVSLDADAKLFAPIKLSDKSSDLLAVASRQGKLLIYKAE 669

Query: 712 AIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADAD 747
            + V           + G  L  G   ++   VL   + 
Sbjct: 670 DLPVLPRGKGNKLISIAGAKLDMGIDGVAAVAVLPEGSS 708


>gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
 gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
          Length = 738

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 393/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNI 
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIL 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ +M  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E       ++    I +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTFTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
 gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
          Length = 760

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 241/752 (32%), Positives = 390/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M  ++GPD+PT A I+  +  ++  Y TGR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E       +IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEG-----NEIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D ++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE      + + D +  E + V
Sbjct: 448 EREKLELLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  + G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDAGSLNYKSGDNYLAHSRGKSNQQAVFLGNDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++  G  I  ++   E+E  W     +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNIAAGTNIRHVV-MGEEEQLW-----LVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  NRSGK  + L    E+L  +     + ++IL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEILAITNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I      + ++ +S  I L   + 
Sbjct: 672 GKGNKIINIPAAKAKEREEFVSHLIALPQQSS 703



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +  +EQ  L  S+ G+G      D    NRSGK +        N    L    
Sbjct: 585 TNIRHVVMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTL---PQNSEVLLPKAV 641

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
              +ND+I+ ++++G ++  P+ ++    +  KG  I + 
Sbjct: 642 GNLENDEILAITNQGRMLLFPIKDLPQLGKG-KGNKIINI 680


>gi|159902545|ref|YP_001549889.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887721|gb|ABX07935.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 828

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 264/853 (30%), Positives = 436/853 (51%), Gaps = 61/853 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + ++S+  EMQ SYL YA++VI+GRA+PD RDG+KPV RRIL+ M ++G+   + + 
Sbjct: 2   EERLQAISLHHEMQRSYLEYAMSVIVGRALPDARDGMKPVQRRILYAMHELGLTPERPFK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  +++G GNFGSVD DPPAA RYTE
Sbjct: 62  KCARVVGDVLGKYHPHGDQAVYDALVRLVQSFASRYPVLDGHGNFGSVDDDPPAAMRYTE 121

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A+  +  +LG +TV+F PN+D S QEP+VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 122 TRLAAIAYEAMLGELGSNTVEFAPNFDSSQQEPIVLPAQLPFLILNGCSGIAVGMATSIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++  + +I  P+I  + L+ II GPDFPTG  +L  TG+K  Y  G+GSI +R
Sbjct: 182 PHNINEVINALIEIIKKPNISEERLLSIIPGPDFPTGGEVLIGTGVKETYLKGKGSIPMR 241

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+ +       +  I++TE+PYQ++K+  +EK+AE+V   ++  IAD+RDESDR+
Sbjct: 242 GIAHIEEINPGKGKHKKNAIIITELPYQISKSNWIEKLAEMVNNGKVEGIADIRDESDRE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R ++ + ILN LY+ TSLQS F   ++A+   +P++ +L   L  F+ FRE
Sbjct: 302 GMRIVVELRRDSNPEKILNTLYQRTSLQSNFGATLLAIVNGQPKQLSLKKFLDIFLEFRE 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRTK  L K  +R  ++ GL  A+ N+  V+ +I  + +   AR  LM R      
Sbjct: 362 LTIIRRTKNNLLKTLERLEIVEGLLKALENVRNVIDMIESAKDAMEARTRLMVR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q   IL + L RLT L    + NEL  L  +   
Sbjct: 416 --------------------LDLTEKQADGILSMPLRRLTNLETQSLYNELEELKEKKSC 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+ R  LL  + +EL  ++ +  + R+T+++EG  ++  +                
Sbjct: 456 LEIVLNDRDELLKAMIEELKGLRKQFGSKRKTKLIEGGDELLAQRNASLRPNAELQRKKA 515

Query: 547 YVKRVPLSVYRAQRRG----------GKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
           Y      S    Q             G+          D       ++ +  +  V+  +
Sbjct: 516 YENLPRESRLMIQNDNQVKIVSPQLLGRLHLDESCNLGDAPIPARLIWPIEKNPKVIVVT 575

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +     W      P    K +  IL     E+I++I+P  +D+     L +   T 
Sbjct: 576 NCGKI-ALVKWEFSGNQPGIIQKFIPTILEK---EKISSIIPIGKDKE----LSIGLLTS 627

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
            G  +R  + + + ++      +KL     + S   C   + +++ + +G+ ++  I   
Sbjct: 628 DGRFKRLDIEEIVDMSGRAASLLKLKENVNLQSGLICRLNDYLIIVSDIGRILKIKIDDE 687

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--DYDERICYMKHMSAQRRL-ISGDT 769
                G+ + G   + L  G+++I        +      ++   +KH     R    GD 
Sbjct: 688 NIPIMGKLAQGSVIMKLFPGERIIGAITCSSKEDLIMITKKGSILKHSINSIRTCKRGDL 747

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
             I ++  DS+ E    + R  ++   +  +  ++ K    R S    +           
Sbjct: 748 GTIKNILKDSNKE----QNRVVQVFNGKSLVGVITSKERNGRISQEAIKEIKYDKINKDL 803

Query: 830 TDVSKINEIGALV 842
             V     I  ++
Sbjct: 804 IKVDDDEYIDEVI 816



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           K KE  I  ++  G  KR    +   +S R      A  + K+ E   L +      ND 
Sbjct: 616 KDKELSIGLLTSDGRFKRLDIEEIVDMSGR------AASLLKLKENVNLQSGLICRLNDY 669

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVS 893
           +I+VSD G ++++ +++  I I  +  +G VI      ER++ 
Sbjct: 670 LIIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFPGERIIG 712



 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 23/226 (10%)

Query: 681 RDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI--SLAKGDQV 735
            D  +             +++ T  G+           F+G     ++    ++ + +++
Sbjct: 553 GDAPIPARLIWPIEKNPKVIVVTNCGKIALV----KWEFSGNQPGIIQKFIPTILEKEKI 608

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            S   ++    D +  I  +      +RL   +  +++               +   +  
Sbjct: 609 SS---IIPIGKDKELSIGLLTSDGRFKRLDIEEIVDMSGRAASLLKLKENVNLQSGLICR 665

Query: 796 KEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +++ VS+ G   +    D    I  +  +G     +        ++     +  + +
Sbjct: 666 LNDYLIIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFPGER---IIGAITCSSKEDL 722

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-----ERVVSV 894
           I+++ KG++++  +N IR   R   G  I +  KD      RVV V
Sbjct: 723 IMITKKGSILKHSINSIRTCKRGDLG-TIKNILKDSNKEQNRVVQV 767


>gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 832

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 251/821 (30%), Positives = 414/821 (50%), Gaps = 75/821 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVKC 74
           I    + +  +  YL YA++VI  RAIPD+RDGLKPV RRILF M   + + ++ ++ K 
Sbjct: 44  IVDGDLAEHARRKYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKS 103

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ G+V+GKYHPHG++A+YDA+ RMAQ +++R+ L++GQGNFGS+DGD  AA RYTE +
Sbjct: 104 AKVVGDVIGKYHPHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAK 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L+ ++ +DTV+FRP YDG+ +EP+VL AR+P +LVNG  GIAVGMAT+IP HN
Sbjct: 164 LSKLAAELITEIKRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHN 223

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           LGEV+  C+ +ID PD  +  +M  I+GPDFPTG  ++  R  ++ AY TG+G+  +RG 
Sbjct: 224 LGEVIRACLLLIDEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGS 283

Query: 254 SHIEKTSGDRE---------QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
              ++    ++         ++V+TEIP+ V K++++E+I +++  K++  +  ++D S 
Sbjct: 284 WKYQEGKETKQGRKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLST 343

Query: 305 RQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE------RFTLIGI 357
                 + ++ K     ++++  L+++T LQ+   +++  L            R  L  I
Sbjct: 344 EDIRVELELDPKSEVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSI 403

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ FR + V RR +Y L K  +R H+L G  +   +LD+ +RIIR S     A ++L
Sbjct: 404 LRYFLDFRLQTVRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKL 463

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++                             LS++Q  A+LE RL +L  L    I  EL
Sbjct: 464 IK--------------------------AFELSDIQADAVLETRLYKLAKLEILKIEEEL 497

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVR 535
                + K    IL S+ +L G+++ EL ++  E    RRTRI       +   E  IV 
Sbjct: 498 ADKRKQAKRIRAILKSKKKLWGVVRDELQALSGEYADRRRTRIDAEDLTEEFSAESFIVE 557

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED +V V+  G++KR         R          MR+ D    L   ST   V+ FS+ 
Sbjct: 558 EDAMVLVTRDGWIKRQRNVNLETTR----------MREGDAPLALVGGSTRDCVVLFSNR 607

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------PEDESS 642
           G  Y  +V  +P  S    G  +  +     GE++ ++                PE    
Sbjct: 608 GSAYVIRVNDVPASS--GHGTPVQKLFKFKDGEKVISVTTTDPRFMLEFAEAEKPELGEE 665

Query: 643 WNNLYVVF--ATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           + + Y  F   T+ G   R  L    +   RSG++  K  + DE + V     ++D+   
Sbjct: 666 FEDPYPHFLAVTRGGMALRFTLWPHREPSTRSGRLYGKTKAGDEFVEVFQVWGDDDVCAL 725

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T+ G+ +   +  + + AG    GV  I     D V+++     +          +K + 
Sbjct: 726 TQKGKLLCCNVMDVNLLAGPG-RGVTLIKTDDKDGVVAVWKTSVSAEIKKSSGGTIKVVK 784

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            +  + +   +    +K  S    ++      + +   + +
Sbjct: 785 GKATVTNRGGKGRPLMKRGSVKAVSLPPPETPDFEAGAERL 825



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 38/261 (14%)

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            ED +   +       +   V   +     +         ++   D  L++   +  + +
Sbjct: 542 AEDLTEEFSAESFIVEEDAMVLVTRDGWIKRQRNVNLETTRMREGDAPLALVGGSTRDCV 601

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G      ++ +   +G  +   +      G++VIS+                  
Sbjct: 602 VLFSNRGSAYVIRVNDVPASSGHGTPVQKLFKFKDGEKVISVT----------------- 644

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                           T  +           E  +E +      L V+  G   R + + 
Sbjct: 645 ---------------TTDPRFMLEFAEAEKPELGEEFEDPYPHFLAVTRGGMALRFTLWP 689

Query: 817 FR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            R  S RSG+    T           V VF V  +D +  ++ KG L+   V ++ + + 
Sbjct: 690 HREPSTRSGRLYGKTKAGDE-----FVEVFQVWGDDDVCALTQKGKLLCCNVMDVNLLAG 744

Query: 876 ATKGVVIFSTAKDERVVSVER 896
             +GV +  T   + VV+V +
Sbjct: 745 PGRGVTLIKTDDKDGVVAVWK 765


>gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
 gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
          Length = 738

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 395/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMEWFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594]
 gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594]
          Length = 769

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 234/755 (30%), Positives = 379/755 (50%), Gaps = 64/755 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    ++ +    I        ++  YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MSDPTEITEPDPFDAIVDAPFDSALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + K AR+ GEV+GKYHPHG+ A YDA+ R+AQD++LR  L+EGQGNFG++
Sbjct: 61  RQLKLDPTNTFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  L+  L + TVDF P Y+G  +EP ++   +PN+L NG  
Sbjct: 121 DGDNAAAYRYTEARLTRTAMALMAGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP+HN+ E++D  + +IDNP ++   LME+ +GPD PTG +I+     I N
Sbjct: 181 GIAVGMATNIPSHNVHEIIDATLELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISN 240

Query: 240 AYATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           AY TGRGS  IRG  H             IE+  G + Q+V++EIPYQV K  ++E+IA+
Sbjct: 241 AYETGRGSFRIRGRFHAAEAEKQADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQ 300

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
            + +K++  + D+RDESD Q   V++   R    +++   +Y+ T +++ F +N+  L+ 
Sbjct: 301 AIADKKLPILDDVRDESDEQIRIVLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDA 360

Query: 347 YK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            + P    L  +L+ +V  + E++ RRT++ L++   R  ++ G  IA  NLD V+ IIR
Sbjct: 361 TRTPMVMGLKELLENWVRSQIEILQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
           +   P+                                     L++ Q  AIL +RL  L
Sbjct: 421 YEDEPKQV-----------------------------MMAEFSLTDRQAEAILNMRLRSL 451

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRI 520
             L   +++ E   L  E +E   +L S +R    +K++L +++ E         RRT I
Sbjct: 452 RKLEEMELKQEKTDLLAEQEELEKLLGSPARQRTRLKRDLKALQKEYGLDTELGARRTTI 511

Query: 521 VEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            E     +   +  I +E + V +S  G+V+     V         G      ++ D   
Sbjct: 512 AEAEPTVEFSMDAMIEKEPVTVVLSQKGWVRAAKGHVDL--EGSKDGCGDFKYKEGDGPA 569

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   VL  +  G  +     +LP    +  G+ + N L ++   +I  ++    
Sbjct: 570 FAVHCQTTDKVLLAADNGRFFTLGADKLPGA--RGFGEPVRNTLDIDAEAQIVAMLV--- 624

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDIL 697
              S     ++ A   G     ++ + +   R GK  + L    ++  V      ++ + 
Sbjct: 625 ---SNPRGRLLLAADTGKGFAAEMGELVAETRKGKQVVNLKGDAKLRVVRPIADCDDHVA 681

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + V F +  + V A     GV+      G
Sbjct: 682 VVGENRKLVVFNLEELPVLA--RGQGVQLQRYRDG 714


>gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009]
 gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009]
          Length = 753

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 237/743 (31%), Positives = 370/743 (49%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FR NYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVT+IP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R     +++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR++Y   +   R  VL G  IA  N+D+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKAFNLTEIQAEAILNMRLRSLRKLEEFEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    +L S +     + +++  V++          RRT+  +         +E
Sbjct: 449 NLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDKLGQSFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y   V +LP G  +  G+ +   + + Q   I T+               + 
Sbjct: 561 LLATNGRFYALDVAKLPGG--RGHGEPIRMFIDMEQDAAIVTVFV------HTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFP 709
           A+  G        + +   R GK  + +D  +E  ++      ++ I +     + V FP
Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSIAVIGDNRKMVIFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +         GVR      G
Sbjct: 673 LDQVPEMT--RGRGVRLQKYKDG 693



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    +  L  S  G G   +  +   S R GK I   DV        +V+      +D 
Sbjct: 603 VHTGGRKFLIASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVS----EGDDS 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           I ++ D   ++  P++++   +R  +GV +      
Sbjct: 659 IAVIGDNRKMVIFPLDQVPEMTRG-RGVRLQKYKDG 693


>gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C]
 gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C]
          Length = 736

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 240/755 (31%), Positives = 392/755 (51%), Gaps = 60/755 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++     +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  ++  +M  I+GPDFPTG +I+ ++  I +AY TGRGS  +
Sbjct: 182 PHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    R     +++  L++ T+L+S   +NM  +     P+   ++ +L+ F++ R+ ++
Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I  E ++L  +     +
Sbjct: 406 -------------MMQRFQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  ++K+E+ +V+ +         RRT   +  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILIISSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D        ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITEILVYKPD------HLLLLASSIGKGFVVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   +SGK  M +      ++       + +    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKSGKQIMNVPDGHTCIACLPVNG-DSVACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            GV      K  +++ + I    D         +K
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNREDGLSWNSGGKVK 706


>gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
 gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
          Length = 750

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 373/742 (50%), Gaps = 59/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+      E  E  + +      + + YL YA++ I  R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDIA----ELPEDSVRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQ +SLR  L++GQGNFG+V
Sbjct: 57  RLLRLDPASGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  L+  L + TVDFRP Y+G  +EP +    +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN+ E++D  V +ID P+ +   L++ ++GPDFPTG V++     I  
Sbjct: 177 GIAVGMATSIPPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+  +R         G    +VV++IPYQV K+ ++E+IAEL+ +K++  +AD+
Sbjct: 237 AYATGRGAFRVRAKIEKVDEKGGGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGIL 358
           RDESD +   V+    R   AD+++  L+R T L+   S+N+  L+  +     +L   L
Sbjct: 297 RDESDEEIRIVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQAL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            A++  + EV++RR+++ L K  DR  +L G  I   NLD V++IIR    P+       
Sbjct: 357 AAWLKHQFEVLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEPKPV----- 411

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   ++  E  
Sbjct: 412 ------------------------MMAEFGLTDRQAEAILNMRLRSLRRLEEMELTRERA 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL--DMEDED 531
           +L  E KE   +++S +R    +K++L ++++          RRT + E     ++  E 
Sbjct: 448 TLDAEGKELEALIASPARQRTRMKRDLAALRERYGPETALGARRTLLSEAAPAREIPLEA 507

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            + RE + V +S  G+++ +   +  A +   K       ++ D         T   +L 
Sbjct: 508 MVEREPVTVILSQRGWIRAMKGHLDEAAQAAVK------FKEGDGPAHAIRAQTTDRILL 561

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +  G  Y     +LP G  +  G+ +     ++   R+  ++       +     ++ A
Sbjct: 562 ATDQGRFYTLPADKLPGG--RGFGEPVRLFADIDADARVAALLA------AKPGAELLLA 613

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPI 710
           +  G      ++D     R GK  + L     +  V      ++ +       + V FP+
Sbjct: 614 SGDGKGFVVDMADVTAETRKGKQVVNLREGGRLKVVHPVAPTDDYVAAIGDNRKMVIFPL 673

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A     GV       G
Sbjct: 674 GELPRMA--RGQGVTIQRYKDG 693



 Score = 38.4 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IIL 855
              +L  S  G G      D     R GK +         E G L  V PV   D  +  
Sbjct: 607 GAELLLASGDGKGFVVDMADVTAETRKGKQVVNLR-----EGGRLKVVHPVAPTDDYVAA 661

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + D   ++  P+ E+   +R  +GV I      
Sbjct: 662 IGDNRKMVIFPLGELPRMARG-QGVTIQRYKDG 693


>gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 739

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 373/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV+ G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR E + L  +    
Sbjct: 407 ---------------LMDHFKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + + ++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIREQDLMPAEAVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +        +  R  D      +  T+  + F    G  Y   +  
Sbjct: 512 GWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + L+   G  +  I  + +DE S     ++ A+  G   + ++   
Sbjct: 564 LP--SARGLGEPLSSKLAPASG--VAFIQVYLDDEESE----LIAASSSGYGFKTQVKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   +S   +       G +
Sbjct: 616 DTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEAKEQILSMTTLNLDE 693



 Score = 38.4 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISNLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +    L  +E  ++  S  G+G +T       + ++GK      V +
Sbjct: 575 SSKLAPASGVAFIQVY--LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSF--LSVPE 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++   L++   +     + ++S  G L+ + ++E+   ++  KG  +      E+++S+
Sbjct: 631 KSKALPLISAQNMT---HLAVLSSAGRLLIIDLSELPNLNKG-KGNKLIQLEAKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 753

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/743 (31%), Positives = 370/743 (49%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FR NYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVT+IP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R     +++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR++Y   +   R  VL G  IA  N+D+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKAFNLTEIQAEAILNMRLRSLRKLEEFEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    +L S +     + +++  V++          RRT+  +         +E
Sbjct: 449 NLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDKLGQSFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y   V +LP G  +  G+ +   + + Q   I T+               + 
Sbjct: 561 LLATNGRFYALDVAKLPGG--RGHGEPIRMFIDMEQDAAIVTVFV------HTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFP 709
           A+  G        + +   R GK  + +D  +E  ++      ++ + +     + V FP
Sbjct: 613 ASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +         GVR      G
Sbjct: 673 LDQVPEMT--RGRGVRLQKYKDG 693



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    +  L  S  G G   +  +   S R GK I   DV        +V+      +D 
Sbjct: 603 VHTGGRKFLIASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVS----EGDDS 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + ++ D   ++  P++++   +R  +GV +      
Sbjct: 659 VAVIGDNRKMVIFPLDQVPEMTRG-RGVRLQKYKDG 693


>gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
 gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
          Length = 758

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/752 (32%), Positives = 390/752 (51%), Gaps = 62/752 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL ++G+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ E+ D  + +IDNP  DL  +M+ ++GPD+PT A I+  +  ++  Y TGR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSVKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D ++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR E V +R +Y L+K   R H+L GL +A  NLDEV+ IIR    P+     LM+R  
Sbjct: 357 QFRRETVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E   L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQEELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVV 540
           E ++   +L S  R+  ++K+E+ +  ++    RR+ IVE      M + D +  E + V
Sbjct: 448 EREKLEKLLGSERRMNTLLKKEIQADAEKYGDDRRSPIVERAEAKAMTERDLVPSEPITV 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +      S +  +  D         ++   +F  S G  Y 
Sbjct: 508 VLSEKGWI--------RHAKGHDVDASSLNYKAGDKYLASARGKSNQPAVFLGSDGRSYS 559

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S +++G+ +   L++N G  I  ++   E      +   +  +  G     
Sbjct: 560 LESHSLP--SARSQGEPITGRLNINAGTNIRQVVMGEE------SQLWLVGSDAGYGFVC 611

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K SD +  NRSGK  + L    E+++       + ++IL  T  G+ + FPI  +     
Sbjct: 612 KGSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEILAITNQGRMLLFPIKDLPQLGK 671

Query: 719 RNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
                +  I        ++ +S  + L   A 
Sbjct: 672 GKGNKIINIPSAKAKAREEFVSHLMALPQGAT 703



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 15/197 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +   +     G + ++ A+G        +      Y
Sbjct: 499 LVPSEPITVVLSEKGWIRHAKGHDVDASSLNYKAGDKYLASARGKSNQPAVFLGSDGRSY 558

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  +  R   +  + Q  L  S+ G+
Sbjct: 559 SLESHSLPSARSQGEPITGRLNINAG-----------TNIRQVVMGEESQLWLVGSDAGY 607

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    NRSGK +            +++      ++D+I+ ++++G ++  P+ 
Sbjct: 608 GFVCKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDL---ESDEILAITNQGRMLLFPIK 664

Query: 869 EIRIASRATKGVVIFST 885
           ++    +  KG  I + 
Sbjct: 665 DLPQLGKG-KGNKIINI 680


>gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
 gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
          Length = 739

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 373/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV+ G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR E + L  +    
Sbjct: 407 ---------------LMDHFKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + + ++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIREQDLMPAEAVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +        +  R  D      +  T+  + F    G  Y   +  
Sbjct: 512 GWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + L+   G  +  I  + +DE S     ++ A+  G   + ++   
Sbjct: 564 LP--SARGLGEPLSSKLAPASG--VAFIQVYLDDEESE----LIAASSSGYGFKTQVKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   +S   +       G +
Sbjct: 616 DTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEAKEQILSMTTLNLDE 693



 Score = 38.4 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +    L  +E  ++  S  G+G +T       + ++GK      V +
Sbjct: 575 SSKLAPASGVAFIQVY--LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSF--LSVPE 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++   L++   +     + ++S  G L+ + ++E+   ++  KG  +      E+++S+
Sbjct: 631 KSKALPLISAQNMT---HLAVLSSAGRLLIIDLSELPNLNKG-KGNKLIQLEAKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|293510133|ref|ZP_06668841.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|291467077|gb|EFF09595.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 752

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 254/842 (30%), Positives = 424/842 (50%), Gaps = 100/842 (11%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   +K + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS
Sbjct: 1   MYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D DPPAA RYTE +L   A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG 
Sbjct: 61  IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI+ G AT+IP HNL EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK 
Sbjct: 121 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +G+G I++R     E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++
Sbjct: 181 AYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEV 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDE+DR G R+ IELK+  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ 
Sbjct: 241 RDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIID 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           +++  + EVV  RTK+ L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++
Sbjct: 301 SYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                         +E Q  AI+ L+L RLT      +  E   
Sbjct: 361 --------------------------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKE 394

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVRED 537
           L   IK+   IL +   LL +IK+EL  +K +  + R +        + ++ E  +  E+
Sbjct: 395 LEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEE 454

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++++++  GY+KR  +  Y A      G   + ++D D +     V+T  +VL F++ G 
Sbjct: 455 VILSMTRHGYIKRTSIRSYNAS-----GVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGR 509

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
                V +L     +  G+ +  I+ + + E +  +     ++    + + VFAT++G +
Sbjct: 510 YLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVF---NEKDFNTDAFYVFATQNGMI 566

Query: 658 RRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++ +  F     +   IA K+   D+++SV    ++  I + T  G  + +  S +   
Sbjct: 567 KKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDT 626

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R + GV+ I+L   D V+    V   D                               
Sbjct: 627 GLR-AAGVKSINLKAEDFVVMTEGVSEND------------------------------- 654

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  IL  +++G  KR S    +++ R+ +GI      K N
Sbjct: 655 ----------------------TILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKN 692

Query: 837 EIGALVAVFPVNDNDQIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
               + A     ++ Q  L S      G +     N+I  + + T G  I  T     V+
Sbjct: 693 PHRIVAAHVVTGEHSQYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVI 747

Query: 893 SV 894
            +
Sbjct: 748 DM 749



 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 107/254 (42%), Gaps = 11/254 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+HG ++R  +      N SG   + L   D +L  +    ++ +L+ T  G+ + 
Sbjct: 456 ILSMTRHGYIKRTSI---RSYNASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLF 512

Query: 708 FPISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+     +        V  I   + D+V+ + +    D + D    +       ++   
Sbjct: 513 IPVHKLADIRWKELGQHVSQIVPIEEDEVV-INVFNEKDFNTDAFYVFATQNGMIKKSTV 571

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
              +     K   + +   +++    ++  K+Q I  ++ KG     ++ +   +     
Sbjct: 572 PLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSELSDTGLRAA 631

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+++ ++   +    +V    V++ND I++ + +G+L R+    +++A RA +G+ +   
Sbjct: 632 GVKSINLKAED---FVVMTEGVSENDTILMATQRGSLKRISFKILQVAKRAQRGITLLKE 688

Query: 886 AKDE--RVVSVERI 897
            K    R+V+   +
Sbjct: 689 LKKNPHRIVAAHVV 702



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 82/220 (37%), Gaps = 15/220 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R  I +       N+ GV  I L  GD ++    V   D  
Sbjct: 448 VMVPSEEVILSMTRHGYIKRTSIRSY------NASGVEDIGLKDGDSLLKHQEVNTQDTV 501

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  R  ++              + ++ +      E  I+    ++      ++   
Sbjct: 502 LVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVF-A 560

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K+++   F+ + R  K + AT V + +    L++V     +  I ++++KG  +
Sbjct: 561 TQNGMIKKSTVPLFKTT-RFNKPLIATKVKEND---DLISVMRFEKDQLITIITNKGMSL 616

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               +E+        GV   +   ++ VV  E + E++ +
Sbjct: 617 TYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 656


>gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 899

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 243/734 (33%), Positives = 411/734 (55%), Gaps = 46/734 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL KDTV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H E     +  IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQE-----KNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNK   R  ++ GL  A++ LDEV+++IR S N   A   L+            
Sbjct: 357 KRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVI----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +  Q+ AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------SFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+    L   I   L  VK +    R++++ +    LD++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNDNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  ++         G+     +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVIDNNILNKNELSSFGK-----KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKIST 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I   +   E  +S    +++  TK+G ++R ++SD    
Sbjct: 566 SKWKEQGVHINSVATTQPNETIINALVIKEFINSTQ--HLLLVTKNGLIKRTQISDLETK 623

Query: 669 --NRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             N+S KI MK+   D ++  +   ++ +   + TK G  VR+ I  I + +   S GV+
Sbjct: 624 IFNKSFKI-MKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQST-ISKGVK 681

Query: 726 GISLAKGDQVISMA 739
             +L K DQ+IS  
Sbjct: 682 AANL-KDDQIISAL 694



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 105/279 (37%), Gaps = 15/279 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E +   +   + E        ++ +K G ++     D   +N++   +      D  +S 
Sbjct: 481 EDLVEDLDVDQKEVIIEKEINLWISKDGYIKVI---DNNILNKNELSSFGKKPNDMWISQ 537

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KGDQVISMAIVLHA 744
             C+  + ++L +        P+  I   +     GV   S+A     + +I+  ++   
Sbjct: 538 GVCSNLDHLILISDQANYYSIPLYKIST-SKWKEQGVHINSVATTQPNETIINALVIKEF 596

Query: 745 DADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                  +   K+   +R  IS  +T+          +  + S      +  K  +   V
Sbjct: 597 INSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIV 656

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+  R +  D  I +   KG++A ++    +   +++   +  N  II+ ++K    
Sbjct: 657 TKNGYAVRYNIEDIPIQSTISKGVKAANL----KDDQIISALSLQTNKDIIIFTNKNNYK 712

Query: 864 RVPVNEIRIASRATKGVVIF---STAKDERVVSVERIRE 899
           ++  N I I  R  KG+ I       K+E + S    +E
Sbjct: 713 KIDQNLIPIYIRPKKGIRILVEKKKNKEEVIFSFAINKE 751



 Score = 38.8 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 1/112 (0%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
           +I +    +  +    +      V+  GY  R  +     Q    KG     ++D D + 
Sbjct: 633 KISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKD-DQII 691

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
               + T+  ++ F++     K     +PI     +G  ++     N+ E I
Sbjct: 692 SALSLQTNKDIIIFTNKNNYKKIDQNLIPIYIRPKKGIRILVEKKKNKEEVI 743


>gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
 gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
          Length = 748

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 243/735 (33%), Positives = 369/735 (50%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPPS---DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG + I     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 415 AR--------------------------FELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---EGLLDMEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +    +        
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      SGV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVADLSGVTFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G  +  G  +  ++ L+ G  I   +P+  +        ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK------LLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     + +    + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPA-EGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVR 725
           S +         GVR
Sbjct: 672 SEVTELG--RGKGVR 684


>gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM
           2831]
 gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 748

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 248/736 (33%), Positives = 375/736 (50%), Gaps = 58/736 (7%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +     GI SV +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++
Sbjct: 4   PFEPPSGDGIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLD 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
               + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PA
Sbjct: 64  PTTAHKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + A  LLD + +DTVDFRP+Y+G  +EPVVL A +PN+L NG  GIAVGM
Sbjct: 124 AYRYTEARLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGR 245
           AT+IP HN  E+ D  + +I++P+     L + ++GPDFPTG + I     +  AY TGR
Sbjct: 184 ATSIPPHNAAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGR 243

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  +R     E        IVVTEIPY + K  ++EK+AEL++EK++  +AD+RDES  
Sbjct: 244 GAFRVRARWAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDESAE 303

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAF 364
               V+    R     +++  L+R T L++   +N+  L G   P+   L   L+ +V  
Sbjct: 304 DVRIVLEPRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVDH 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  V+ RR++Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM R    
Sbjct: 364 RRVVLQRRSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LMAR---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E+Q  AIL+ RL  L  L   +++ E ++L  E 
Sbjct: 417 ----------------------FELTEIQANAILDTRLRSLRKLEEMELKREFDALTAEK 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV--EGLLDMEDEDCIVR-E 536
            E   +L+S       I+ ++ +VK           RRT +     +  ++    +V  E
Sbjct: 455 AEIDALLASEPAQWKAIQAQIRAVKKTFGPETKLGRRRTTLASPPDVGGIDFTAALVERE 514

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G++        RA +      SGV  + +D +   F   T   +L  ++ G
Sbjct: 515 PITVIVSTKGWI--------RALKGHVADLSGVAFKGDDTLKIAFPTETTQKILLLATNG 566

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V+  +  +LP G  +  G  +  +  L+ G  I   +P+  +        ++ A   G 
Sbjct: 567 KVFTLEASKLPGG--RGFGDPVRLMADLDDGTEIVAALPYRPETK------LLIAGSDGR 618

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                    +   R GK  + LD  D   +V      + + +       + FP+S +   
Sbjct: 619 GFVAPADALVANTRKGKNVLGLD-GDATAAVLVPADGDHVAVVNTEKLLLIFPVSEVAEL 677

Query: 717 AGRNSVGVRGISLAKG 732
           A     GVR      G
Sbjct: 678 A--RGKGVRLQRCRSG 691


>gi|291563504|emb|CBL42320.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SS3/4]
          Length = 748

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/732 (34%), Positives = 395/732 (53%), Gaps = 34/732 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K
Sbjct: 3   EKILRTEYSEEMQKSYLDYSMSVITSRAIPDARDGLKPVQRRVLYDMSELHLDHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TVDF  NYD + +EP VL  R PN+LVNG  GIAVGM+T+IP H
Sbjct: 123 RLKKFAEEVYLKDLDKTVDFVSNYDETEKEPEVLPVRVPNLLVNGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D   A IDN  + ++ LM+ + GPDFPTG +I  +  +   Y TG G I +RG 
Sbjct: 183 NLGEVIDAVKAYIDNRLLTVEELMQYMPGPDFPTGGIIANKGDLLQIYETGAGKIRLRGR 242

Query: 254 SHIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E  +   DR+++V+TEIPY +        L  +A+LV  +++ D+ D+ ++S ++G 
Sbjct: 243 IEVELGRRKADRDKLVITEIPYTMIGAGINKFLMDVADLVETRKLTDVVDISNQSSKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + I   LY+ T L+  + VNM+A++  +PE   L  IL  F+ F+   
Sbjct: 303 RIVLELKKDADVNRIKAILYKKTKLEDTYGVNMLAIDEGRPETMNLKQILNTFLEFQYRN 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + ++   LL K  ++  V  GL  A   +D ++ ++R S N + A+  LM  +      +
Sbjct: 363 MTKKYNVLLQKEMEKKEVQEGLIEACDVIDLIIAVLRGSKNMKDAKECLMTGNTEKIKFR 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 D  +        ++ +E Q  AILE+RL +L GL    ++        +I+E  
Sbjct: 423 VPGFEADAKN--------LHFTERQATAILEMRLYKLIGLEILALQKAYKETLRKIREYK 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            ILS++  +  +IK++L S+K E   PRRT I +G   +  E     ++++  +   GY 
Sbjct: 475 HILSNQKNMDVVIKEDLDSIKAEFAEPRRTLIEDGEEMVYVEAKEEAKEVIFVMDRFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S+Y   +      +            +  V T   +  FS  G +Y+ KV   P 
Sbjct: 535 KTMDRSIYERNQETVDSENVW----------VLPVMTDDKLCMFSDTGNMYQVKVAEFPT 584

Query: 609 GSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              + +G  + N+   + + E I  ++P     S +     +FAT    V+     +FI 
Sbjct: 585 LKMKDKGIPIENVSKFDGKTETILFMLP----ASGFTGKKFLFATAQAAVKIVPGEEFIT 640

Query: 668 INRSGKIAMKLDSRDEILSVE----TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            N++  +A KL   D++  +           D++L T  G  ++F +  I     +NS G
Sbjct: 641 ANKT-VVATKLAGEDKLTEIREIGTEIDGTRDVVLQTVDGMFLKFQLEEIPEL-KKNSRG 698

Query: 724 VRGISLAKGDQV 735
           VRGI L K D +
Sbjct: 699 VRGIRLEKEDTL 710



 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVNDNDQIILVSDK 859
           L  + +   K     +F  +N   K + AT ++  +++  +  +   ++    ++L +  
Sbjct: 622 LFATAQAAVKIVPGEEFITAN---KTVVATKLAGEDKLTEIREIGTEIDGTRDVVLQTVD 678

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G  ++  + EI    + ++GV      K++ +  V
Sbjct: 679 GMFLKFQLEEIPELKKNSRGVRGIRLEKEDTLEHV 713


>gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
          Length = 792

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 246/788 (31%), Positives = 380/788 (48%), Gaps = 97/788 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+      ++ E     S+ + +  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MSTETTDLNQGETGD--SLWLANYAQRAYLEYALSVVKGRALPDVSDGQKPVQRRILYAM 58

Query: 61  MQMGVEWNK----KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
            +MG+ ++     K VK AR+ G+V+G++HPHG+ A YDAL RMAQD++ R  LI+GQGN
Sbjct: 59  ERMGLGYSGNTAAKPVKSARVVGDVLGRFHPHGDQAAYDALVRMAQDFAQRYPLIDGQGN 118

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL K +  LLD++ + TVDF PNYDGS +EP  L AR P  L+
Sbjct: 119 FGSRDGDGAAAMRYTEARLAKISSLLLDEIDEGTVDFMPNYDGSTEEPKQLPARLPFTLL 178

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RT 235
           NG  GIAVG+AT IP+HN+ EV   CVA+I  P +  + L E++ GPD+P G  I+    
Sbjct: 179 NGASGIAVGLATEIPSHNISEVAAACVALIKTPKLKDEELFELLPGPDYPGGGQIISAEA 238

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I EL   K    
Sbjct: 239 DIAEAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSTQKVLEEIEELSNPKVKAG 298

Query: 296 IAD------------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQS 335
                                +RDES +     ++          + ++  L  +TSL++
Sbjct: 299 KKTVTQEQTQLKSTLLSVLDGVRDESSKDAPVRLVCEPKTSKIDQNELITTLLAHTSLET 358

Query: 336 LFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
              +N+  +    KP + ++  +L+ ++AFR + + RR+++ L K +DR H+L G    +
Sbjct: 359 SAPINLTMVGLDGKPVQKSMRQMLEEWIAFRRQTIARRSQHRLGKVQDRIHILEGRQTVL 418

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV++IIR S  P+ A   L++R                            LS+ Q 
Sbjct: 419 LNVDEVIKIIRNSDEPKPA---LIKR--------------------------FRLSDRQA 449

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L    I  EL  L  + KE  DIL S + L  ++ +E+ +       
Sbjct: 450 EDILEIRLRQLARLEAIKIEQELAELRGKEKELQDILGSPAALRKLMVKEIEADAKAFGD 509

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT I      + +   ++ E + V VS  G+V        RA++  G   +    +  
Sbjct: 510 ARRTLIQAEKKAVAE-VKVIDEPVTVVVSQKGWV--------RARQGHGHDAASFAFKAG 560

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   +L F S G VY   V  LP    +  G+ L  ++ L  G ++    
Sbjct: 561 DGLYGTFECRTVDVMLAFGSNGRVYSVPVSALPGA--RGDGQPLTTMVELEAGTQLVHYY 618

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCT 691
             P       + +++ +T  G     ++   +   + GK  +   S    D +       
Sbjct: 619 AGPA------SAWLLLSTSGGYGFLAQVEHMVSRQKGGKAFINCGSDGTPDTVCRPSMAH 672

Query: 692 QEN-------------------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             N                    ++  +  G+ + F I  ++        G+  I L   
Sbjct: 673 APNPATGVVASAAEGGLHSPASHVVCVSTGGRILSFQIGELKPMPS-GGRGLMLIDLEPK 731

Query: 733 DQVISMAI 740
           DQ+   A 
Sbjct: 732 DQLAGAAA 739


>gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
          Length = 733

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/719 (33%), Positives = 372/719 (51%), Gaps = 52/719 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + D +   YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  M +       KC
Sbjct: 8   RIVDEPLGDALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEAAARKC 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ GEVMG +HPHG+ AIYDAL RMAQ+++ R  L++GQGNFG++DGD  AA RYTECR
Sbjct: 68  AKVVGEVMGNFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMRYTECR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L  AA  +LD + +D VDFRP YD    EPVVL   +PN+L NG  GIAVGMAT++P HN
Sbjct: 128 LTLAAMMILDGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATSVPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
           + E+VD C  ++ N       LME I GPDFPTG V +  R  I+ AY TGRGS+ +R  
Sbjct: 188 VVELVDACRKLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSVRVRAR 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E     + +I+V EIPYQV K+ ++E++A+L+  K+   + D+RDESD     V+  
Sbjct: 248 YEVEDAGRGQWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDENIRLVLEP 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRR 372
             R    +V++  L++ + L++ F +NM  L+    P    L   L A++  R  V++R 
Sbjct: 308 KSRNIEPEVLMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRRVVLLRM 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L K   R H+L GL IA  NLDEV+RI+R    P   R  LM R            
Sbjct: 368 SNWRLEKIEKRLHLLDGLMIAFLNLDEVIRIVREEDKP---RDMLMSR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL+ RL +L  L    I++E   L  E +  L +L 
Sbjct: 413 --------------FTLSELQADYILDTRLRQLARLEEMVIQDEHKKLSEEREGILALLG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIVREDMVVTVSHLGYVK 549
           S       I Q L+ V+ +L +PRRT   +  + +E    E  + +E + V +S  G++ 
Sbjct: 459 SEKMQWKRIDQLLVEVRKKLPSPRRTTYADAPVGIEVAAIESYLPKEAITVILSKRGWI- 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +   +  S +  ++ D ++ L         L  ++ G        +LP  
Sbjct: 518 -------RAAKGKVEDPSELKFKEGDELSFLVPGYNTDKFLILTTDGRFLTLSGDKLP-- 568

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S +  G+ L  +L + +  +I T+  +            V   K+G        D +   
Sbjct: 569 SARGHGEPLRLMLDIEESAKIVTVFAYTAGAKR------VMVAKNGYGFVMNEEDAVANK 622

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           R+GK  M +D  + + +++     + I +  +  + + +P++ +   A    V ++   
Sbjct: 623 RAGKQTMTVDGTEAMAALQVT--GDLICVLGENNKVLVYPVTELPEMARGKGVKLQAYK 679


>gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
 gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
          Length = 726

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 234/721 (32%), Positives = 369/721 (51%), Gaps = 61/721 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
             MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D+ PN
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           +DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD L
Sbjct: 121 FDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQL 180

Query: 217 MEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           ++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V   E        +V++ +P+QV
Sbjct: 181 LDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISALPHQV 235

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSL 333
           + A +LE+IA  +R K++  + DLRDESD +     V++        D ++N L+  T L
Sbjct: 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDL 295

Query: 334 QSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL +
Sbjct: 296 EKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLV 355

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A  N+DE++ IIR    P+ A   LM R                            L+E 
Sbjct: 356 AFLNIDELIEIIRNEDEPKPA---LMSR--------------------------FGLTET 386

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +     
Sbjct: 387 QAEAILELKLRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446

Query: 513 DTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
              RR+ +   E    M + D +  E + + +S +G+V        R+ +       G+ 
Sbjct: 447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLN 498

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D         ++  V+F  S G  Y      LP  S + +G+ L   L+L  G  +
Sbjct: 499 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATV 556

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             I+   +D+       ++ A+  G       +D +  NR+GK  + L     ++     
Sbjct: 557 DHILMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 610

Query: 691 TQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADA 746
               + +L  T+ G+ + FP+S +   +      +  I     A+G+  ++   VL + +
Sbjct: 611 EDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPSQS 670

Query: 747 D 747
            
Sbjct: 671 T 671



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 561 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 615

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 616 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 652


>gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
 gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
          Length = 773

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/772 (32%), Positives = 381/772 (49%), Gaps = 74/772 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  + +         ++++    + +YL YAI+V+ GRA+P+  DG KPV RRIL+ M
Sbjct: 1   MEQLTLDATPPSGDDSETITLGLYAERAYLDYAISVVKGRALPECADGQKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N K VK AR+ G+V+GKYHPHG+ A YDAL RMAQ+++LR  LI+GQGNFGS 
Sbjct: 61  NEMGLGNNAKPVKSARVVGDVLGKYHPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LLD++   TVDF PNYDGSFQEP +L AR P VL+NG  
Sbjct: 121 DGDGAAAMRYTEARLTPIAKLLLDEVDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT+IP HN+ EV    + +I +P+ DLD +M  +  PDFP GA I+   + +K 
Sbjct: 181 GIAVGMATDIPPHNIREVAAATIHLIKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            YA GRGSI +R    IE+ +  + Q+VV E+P   + A +LE+I EL   K        
Sbjct: 241 IYAGGRGSIKVRARWDIEEMARGQWQLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGL 300

Query: 298 ----------------DLRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSV 339
                            +RDES ++    ++   +  +   +   N L  +TSL++  S+
Sbjct: 301 STEQQNLKAQVLAMLDAVRDESGKENAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSI 360

Query: 340 NMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V+++   +P +  LI +L  ++ FR+  V RR+++ L +  DR HVL G  IA  N+D
Sbjct: 361 NLVSIDNAGRPGQRGLIAMLLDWIEFRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNID 420

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S  P+ A  E                                LS+ Q   IL
Sbjct: 421 EVIKVIRESDEPKPALIE-----------------------------AFKLSDRQAEDIL 451

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L +  I  EL  L  E  +   +L+   +L   I  E+    D     RRT
Sbjct: 452 EIRLRQLARLEKIKIEQELAKLAEEKADLEALLADEGKLKTRIIGEIRKDTDTYGDDRRT 511

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E       E  +V E   V VS   ++        R ++  G   +    +  D + 
Sbjct: 512 LIEEAEKA-SVEVKVVEEPTTVIVSQKFWI--------RNRQGHGHDAAQFGFKVGDALY 562

Query: 579 DLFIVSTHTSVLFFS---SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             F   T  +   F    +LG V+   V   P G  +  G    +++ LN G  ++  + 
Sbjct: 563 AAFECKTTDNTYLFGAGNALGKVFSVPVAAWPGG--RGDGIPAQSLVELNGG-SLSHALA 619

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-EN 694
            P  +       V  A            +     ++GK  + L+  +++LS       ++
Sbjct: 620 APATQP------VFLACSAAYGFLATAGNMESRMKAGKQFISLNPGEKLLSPALLQPTDD 673

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            + + ++ G+   F +  ++  +G    GV+ + L   D +++      AD+
Sbjct: 674 RVAVLSESGRFHVFMLDELKQLSG-GGRGVQLLPLDDKDTLVAAVAFGPADS 724


>gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
          Length = 751

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 374/742 (50%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I     E + +  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKTLIPP---EPQDVQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ +  + K A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPSSPFKKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  LL+ L +D V+FRP+YDGS +EP VL   +PN+L NG  
Sbjct: 118 DGDNPAAMRYTESRLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I  P      L+  ++GPDFPTG +++ G+  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R   H E  +     IVVTEIP+ V K+ ++E+IAEL+ EK++  + D+
Sbjct: 238 AYNTGRGAFRVRAKWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    +    +V++  L++ T L+S   +N+  L   + P+   L   L
Sbjct: 298 RDESAEDIRIVIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V+VRR+ +  N+   R  VL G  IA  NLD+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLVRRSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+++Q  +IL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LIRTFKLTDLQADSILNMRLRNLRKLEEMEIRGEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV---EGLLDMEDE 530
           +L  E+K    +L+S       + +++  V+D          RRT+     E  L   +E
Sbjct: 449 NLRTELKGIKAVLASEEEQWKKVSEQVKKVRDLFGPKTPLGKRRTQFANAPEHDLATLEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V VS  G+V        R  +   +  S +  + +D +   F   T + +L
Sbjct: 509 AFVEREPITVVVSDKGWV--------RTLKGHVEDLSNLTFKTDDRLGISFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              + G  Y     +LP G  +  G  + + + L     I ++        +      + 
Sbjct: 561 LLGTHGRFYTLDAQKLPGG--RGHGDPIRSFIDLEGDANIVSLFV------NTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   R GK  M +   +E+ +     + + + +  +  + + FP+
Sbjct: 613 ASHDGQGFVVNEDDCVGNTRKGKQVMNVTMPNEV-AAIATVEGDTVAVIGENRKMLIFPL 671

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A     GVR      G
Sbjct: 672 EQVPEMA--RGRGVRLQRYKDG 691


>gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 755

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/809 (29%), Positives = 398/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HN  E+V  CV ++DNP  DL  LME + GPD+PT A I+     I 
Sbjct: 177 TGIAVGMATDVPPHNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADIT 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI  R V  +E       +IV+T +P+Q +   +LE+IA  ++ K++  + D
Sbjct: 237 KIYQTGRGSIKARAVYTVENG-----EIVITALPHQASSGKILEQIASQMQAKKLPMVTD 291

Query: 299 LRDESDRQGY--RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     +++        D ++  L+  T LQ  + VN+  L    +P+   L+
Sbjct: 292 LRDESDHESPVRMIIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLL 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR +Y L+K   R H+L  L IA  N+DEV+ IIR++ +P   + 
Sbjct: 352 ELLTEWLTFRMTTVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ R                            LS+ Q  AIL+L+L  L  L    I+ 
Sbjct: 409 ELISR--------------------------FALSDKQADAILDLKLRHLAKLEEFKIKG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +LSS  R+  +IK+EL+   ++    RR+ +VE      +  ++ +
Sbjct: 443 EQSELEAERDKLQLLLSSERRMKTLIKKELIKDGEDYGDERRSPLVERTESKALTQQELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V+         Q         +  +  D         ++   +F  
Sbjct: 503 AVESVTVVLSEKGWVRCAKGHEVDGQ--------SLSYKAGDSFLRSAQGRSNQPSVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  +      LP  S +++G+ +    +L  G  +  ++   +DE        + A+ 
Sbjct: 555 TSGRAFATDTHTLP--SARSQGEPITTRFNLAPGTTMEHLL-LSDDEQ-----CYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +  ++L  +   +     IL  T  G+ + F + 
Sbjct: 607 AGYGFICANKDMVSRNKAGKALLSLPANAKVLLPQKVDKSKPQSILAITNEGRMLLFSLD 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +       +G+ G      ++++    V+  D            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTAV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum
           CM4]
 gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum
           CM4]
          Length = 748

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/735 (32%), Positives = 369/735 (50%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPPS---DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG + I     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 415 AR--------------------------FELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---EGLLDMEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +    +        
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +GV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVTELAGVAFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G  +  G  +  ++ L+ G  I   +P+  +        ++ 
Sbjct: 561 LLASNGKVFTLEASKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK------LLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     + +    + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPA-EGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVR 725
           S +         GVR
Sbjct: 672 SEVTELG--RGKGVR 684


>gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
 gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
          Length = 744

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/745 (32%), Positives = 376/745 (50%), Gaps = 57/745 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ ++    
Sbjct: 7   EDPPPIHDTWLADALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAMRQLRLDPGSG 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ G+VMGK+HPHG+++IYDAL R+AQD+++R  L++GQGNFG++DGD  AA RY
Sbjct: 67  FKKSARVVGDVMGKFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD + +DTVDFR  YDG  +EPVVL + +PN+L NG  GIAVGMAT+I
Sbjct: 127 TEARLTEVAALLLDGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQGIAVGMATSI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           P HN+ E+      +I +P+   + L+E++ GPD PTG V++  R  +  AY TGRGS  
Sbjct: 187 PPHNVDELCTALQHLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLEAYRTGRGSFR 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +E       QIVVTEIPYQV K+ ++E++AEL++ +++  + D+RDES      
Sbjct: 247 VRAKWEVEPLKNGTWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDIRDESAMDIRL 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+    R    DV++  L+R T L+S  S+N+  L+    P   +L   L+AF+  R++V
Sbjct: 307 VLEPKSRNVDPDVLMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREALQAFLDHRQDV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L K   R  VL G  IA  NLDE++RI+R    P+                 
Sbjct: 367 LVRRTRHRLEKIAHRLEVLGGYLIAYLNLDEIIRIVREEDEPKAV--------------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  LS+VQ  AIL +RL  L  L   +IR E  +L  E  +  
Sbjct: 412 --------------MMRTFELSDVQAEAILNMRLRALRRLEEIEIRKEFENLSAERDDLT 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDEDCIVREDMVVT 541
            +L+  +R    +  +L  ++           RRT I      + +  E  + RE + V 
Sbjct: 458 ALLNDDARQWRAVSDQLGEIRRGFGKTTEIGRRRTVIGSTPNPVVVPTEALVEREPITVI 517

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S  G++        RA +        V  ++ D         T   +L F++ G  Y  
Sbjct: 518 CSEKGWI--------RALKGHIGLDQEVKYKEGDGERFRLHAETTDKILVFATDGRFYTI 569

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              +LP G  +  G+ L  ++ L   E +  I P+   +       ++ A+  G      
Sbjct: 570 GGDKLPSG--RGHGEPLRLMIDLANDEDVVAIRPYRTGDR------LLVASSEGRGFVVP 621

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + D +   R+GK  + +DS     ++      + + +     + + F  + I        
Sbjct: 622 VDDVVAQTRAGKQVLVVDSGAR-ANICVTVAGDTVAVVGTNRKLLVFDAADIPEMV--RG 678

Query: 722 VGVRGISLAKGDQVISMAIVLHADA 746
            GV       G  +    +    D 
Sbjct: 679 KGVILQKYKPGGHLADAVVFKAEDG 703



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L  S +G G      D     R+GK +   D      I   VA       D +
Sbjct: 602 YRTGDRLLVASSEGRGFVVPVDDVVAQTRAGKQVLVVDSGARANICVTVA------GDTV 655

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +V     L+     +I    R  KGV++        +      +  +
Sbjct: 656 AVVGTNRKLLVFDAADIPEMVRG-KGVILQKYKPGGHLADAVVFKAED 702


>gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
 gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
          Length = 751

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 373/742 (50%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I     E + I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKTLIPP---EPQDIQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ +  + K A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG+V
Sbjct: 58  RLLRLDPSSPFKKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  LL+ L +D V+FRP YDGS +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAMRYTESRLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +ID P      L+  ++GPDFPTG +++     I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R   H E  +     IVVTEIP+ V K+ ++E+IAEL+ EK++  + D+
Sbjct: 238 AYATGRGGFRVRAKWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    +    +V++  L++ T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDIRIVIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V+VRR+ +  ++   R  VL G  IA  NLD+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLVRRSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+++Q  +IL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LIKTFKLTDIQADSILNMRLRNLRKLEEMEIRGEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
            L  E+K+   +L+S+      + +++  V++          RRT+  +         +E
Sbjct: 449 KLRAELKDLKAVLASQDEQWKKVGEQVKKVRELFGPKTALGKRRTQFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G+V        R  +   +  S +  + +D +   F   T + +L
Sbjct: 509 ALIEREPITVVVSDKGWV--------RTLKGHVEDLSNLTFKTDDRLGISFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              + G  Y     +LP G  +  G  + + + L     I ++        +      + 
Sbjct: 561 LLGTHGRFYTLDAQKLPGG--RGHGDPIRSFIDLEGDANIVSLFV------NTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G        D +   R GK  + + + +E  +       + + +  +  + + FP+
Sbjct: 613 ASHDGQGFVVNEDDCVGNTRKGKQVLNVTAPNE-AAAICTVAGDTVAVIGENRKMLIFPL 671

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A     GVR      G
Sbjct: 672 DQVPEMA--RGRGVRLQRYKDG 691


>gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058]
          Length = 739

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 369/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
 gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
          Length = 738

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 245/768 (31%), Positives = 395/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L+ D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMERFKLTEIQVEAILNTRLRLLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E  L    ++    I++E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFIIKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
 gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
          Length = 739

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 375/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI+F M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL++LG+ T D++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV+ G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD      
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR E + L  +    
Sbjct: 407 ---------------LMEHFKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELAAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLGNPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLVPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +        +  R  D      +  T+  + F    G  Y   +  
Sbjct: 512 GWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + L+   G  ++ I  + EDE+S     ++ A+  G   + +    
Sbjct: 564 LP--SARGLGEPLSSKLAPASG--VSFIQVYLEDEASE----LIAASTSGYGFKTQAKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLSSAGRLLIIDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEAKEQILSMTTLNLDE 693


>gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
 gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
          Length = 748

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/735 (32%), Positives = 369/735 (50%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPPS---DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG + I     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 415 AR--------------------------FELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV---EGLLDMEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +    +        
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +GV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVTELAGVAFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G  +  G  +  ++ L+ G  I   +P+  +        ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK------LLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     + +    + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPA-EGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVR 725
           S +         GVR
Sbjct: 672 SEVTELG--RGKGVR 684


>gi|313678723|ref|YP_004056463.1| DNA topoisomerase IV subunit A [Mycoplasma bovis PG45]
 gi|312950625|gb|ADR25220.1| DNA topoisomerase IV, A subunit [Mycoplasma bovis PG45]
          Length = 861

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/823 (28%), Positives = 411/823 (49%), Gaps = 40/823 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +    I   ++   + + +  Y+  VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKKKEQQLNDLLSKIVQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ G+V+GKYHPHG+++IYDA+ RM Q+W +   L+E  GN GS+
Sbjct: 61  YDLGLQHNKPFKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + A +++ D+ K+TV F PN+D S +EPVV+    PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A I NP I+L  + +II+GPDFPTG VI G  GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDAAIAKIKNPAIELSKIAKIIQGPDFPTGGVIYGTDGIHEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  G+G I +    ++  +    + I +TEIPY V K+ ++ +I  +V  + +  + +++
Sbjct: 241 FERGKGRITLASRYNV-YSDNKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLIEVK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++DR G  ++I L +  + +VI+N L+  T ++  ++ N V ++ + P+   +  +L A
Sbjct: 300 DQTDRNGINILITLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNHTPKTMGISALLDA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   ++V V+  ++ L K + R  +++G        D+V+ +IR S N +    +    
Sbjct: 360 YLKHVKDVKVKTIEFDLIKYKTRLEIVIGFLKVAKITDKVIEVIRKSENSKQGVID---- 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +  Q  AI ELRL +L+         E   L
Sbjct: 416 ---------------------NLMSAFDFTLNQATAIAELRLYKLSKTDEHTFILEKQEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDM 538
             +IK+C  +L++       +      +K +    RRT I    ++  +  ED +  E++
Sbjct: 455 EEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFGRIRRTSIEIEQINSSVNQEDLVKDEEV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K+V    Y +        +   ++++D +    + S+   +L F++LG  
Sbjct: 515 FLGISKFGYIKKVSKKTYESNL-----ITTYGIKEDDNILFYDLASSLDKLLLFTNLGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L + + L+ GE I +++   + + +    YV   TK G  +
Sbjct: 570 AYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVT---NYVCMFTKKGQGK 626

Query: 659 RNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L DF         +AMKL + DE++S +      D+LL TK      +  + + ++ 
Sbjct: 627 KVLLKDFDVSRFSKTFMAMKLKNDDELISAKLSNGLKDVLLITKNNFASLYSENDVPIYG 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S G +   LA GD+++S  +V   D+         K        IS  +++   +  
Sbjct: 687 L-KSNGNKACYLASGDELVSFTVVKPNDSVALVSQS-NKIRLINVSEISTVSKQNKGVPI 744

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
            S    N +  +C  L L E  +L V+ +G        ++   
Sbjct: 745 FSKGRLNNAIVQCDPL-LNETKLLLVNNQGQAHFEKIQNYFKQ 786



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 106/261 (40%), Gaps = 15/261 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E+I +     +++   +    +  +K G +++           +      +   D IL  
Sbjct: 497 EQINS--SVNQEDLVKDEEVFLGISKFGYIKKVSKK---TYESNLITTYGIKEDDNILFY 551

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHA 744
           +  +  + +LL T LG     P+  +   +     G+     + L+ G++++S  ++  +
Sbjct: 552 DLASSLDKLLLFTNLGNYAYLPVFKVNE-SKWKEFGIHLSDFVDLSSGEEIVS--VIKVS 608

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER-CQELKLKEQFILTV 803
           D D    +C        ++++  D +     K   +++    +E    +L    + +L +
Sbjct: 609 DFDVTNYVCMFTKKGQGKKVLLKDFDVSRFSKTFMAMKLKNDDELISAKLSNGLKDVLLI 668

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++  F    S  D  I      G +A  ++  +E   LV+   V  ND + LVS    + 
Sbjct: 669 TKNNFASLYSENDVPIYGLKSNGNKACYLASGDE---LVSFTVVKPNDSVALVSQSNKIR 725

Query: 864 RVPVNEIRIASRATKGVVIFS 884
            + V+EI   S+  KGV IFS
Sbjct: 726 LINVSEISTVSKQNKGVPIFS 746


>gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
 gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
          Length = 737

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 248/755 (32%), Positives = 392/755 (51%), Gaps = 60/755 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  V +ID+P  ++  +M  I+GPDFPTG +I+ +   I  AY+TGRGS  +
Sbjct: 182 PHNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFRM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFIIEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +     +  G+++  ++ +   + IT I+    D+       ++ A+  G      
Sbjct: 565 LADNI--SKGKGTGESIKLLVDIGNND-ITNILVHKSDQ------LLLLASSIGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +      ++       + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDGHTCIACLPVNG-DSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            GV      K  +++ + I    D         +K
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLSWNNNGKVK 706


>gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF]
 gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
 gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii]
 gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 739

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 370/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
 gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
          Length = 739

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 230/740 (31%), Positives = 376/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++W  K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWTSKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L + +  LL +LG+ T +++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSQYSELLLSELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP++  + + E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  +     D+ +I++TE+PYQV+ + ++ +IA+ ++ K++  ++D+RDESD      
Sbjct: 246 RAVYSV-----DKNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHANPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VNM  +    +P+  ++  IL  ++  R+ 
Sbjct: 301 LVIVLRSNRIDAESVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK   R H+L GL IA  N+DEV++IIR    P+     LMQR       
Sbjct: 361 TVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIQIIREEDQPKPV---LMQR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   ++R E   L  +    
Sbjct: 411 -------------------FNIDEIQAEAILELKLRHLAKLEEMEMRREQEELEAKAAVI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHL 545
            + L++   L  +I  EL     +    RR+ IV+      + + + +  + + V +S  
Sbjct: 452 REQLANPESLKSLIISELKDDAKKFGDDRRSPIVQRAEAAVINETEMLPADPVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R  +        +  R  D         ++  V      G  Y   +  
Sbjct: 512 GWI--------RCAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDDTGRSYALAINT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + LS   G     ++   EDE+      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGEPLSSKLSPGSGVGFKQVL-VAEDETE-----ILAASNKGYGFKTQAKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + L    E+++++       + L +  G+ +   ++ + V       G +
Sbjct: 616 DTSAKAGKAFLNLSEGAEVMNLQPLEDATHVALLSSAGRLLIVDLAELPVL--NKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L  GDQ++SM ++   +
Sbjct: 674 LIQLEDGDQILSMTLLKLDE 693



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 8/177 (4%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++   GDQ +S A        Y        +  A   L S            S   G   
Sbjct: 527 LNFRAGDQYLSHAQGKSNQRVYVLDDTGRSYALAINTLPSARGLGEPLSSKLSPGSGVGF 586

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           ++    +   E  IL  S KG+G +T +     S ++GK          +E   ++ + P
Sbjct: 587 KQVL--VAEDETEILAASNKGYGFKTQAKQLDTSAKAGKAFLNL-----SEGAEVMNLQP 639

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + D   + L+S  G L+ V + E+ + ++  KG  +      ++++S+  ++  EI+
Sbjct: 640 LEDATHVALLSSAGRLLIVDLAELPVLNKG-KGNKLIQLEDGDQILSMTLLKLDEII 695


>gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2]
          Length = 739

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 369/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 784

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 246/759 (32%), Positives = 372/759 (49%), Gaps = 85/759 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-------YV 72
           S+    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +           V
Sbjct: 20  SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLAFGGPNGATGARPV 79

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+G++HPHG+ A YDAL RMAQD+S R  LI+GQGNFGS DGD  AA RYTE
Sbjct: 80  KCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTE 139

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL +    L+D++ + TVDF PNYDGS +EP  L AR P  L+NG  GIAVG+AT IP+
Sbjct: 140 ARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HNL EV D CVA+I  P +  + L  +I GPD+P G  I+     I  AY TGRGS+ +R
Sbjct: 200 HNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIISSGAEIAAAYRTGRGSLKVR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------- 298
               IE+ +  + Q+VV E+P  V+   +LE+I E+   K  +                 
Sbjct: 260 ARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKIKLGKKALSLDQVQLKQSML 319

Query: 299 -----LRDESDRQ-GYRVVIELKRGASADV-ILNQLYRYTSLQSLFSVNMVALN-GYKPE 350
                +RDES +    R+V E K   +A   ++N L  +TSL+S   +NM  +    +P 
Sbjct: 320 AVLDVVRDESSKDAAVRLVFEPKTSRTAQAELINTLLSHTSLESSSPINMTMIGLDGRPT 379

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + +L  +L  ++AFR+  + +R+++ L+K   R H+L G    + N+DEV+ IIR S  P
Sbjct: 380 QKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQTVLLNIDEVIAIIRQSDEP 439

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           ++A   L+ R                            LS+ Q   ILE+RL +L  L  
Sbjct: 440 KSA---LIAR--------------------------FSLSDRQAEDILEIRLRQLARLEA 470

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  EL +L  E     DIL + + L  ++ +E+ +   +   PRRT I      + + 
Sbjct: 471 IKIEQELKTLREEQGRLEDILGNPTALRRLMIKEIEADAKQFADPRRTLIQAEKKSVLEV 530

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             +  E + V VS  G+V        RA+   G   S    +  D +   F   T  ++L
Sbjct: 531 KVL-DEPVTVVVSSKGWV--------RARGGHGHAPSSFAFKAGDALYGTFECRTVDTLL 581

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G +Y   V  LP    +  G+ +  ++ L  G ++      P       +  ++ 
Sbjct: 582 AFGSNGRLYSVPVAMLPGA--RGDGQPVTTLIDLESGTQLLHYFAGPA------SAMLLL 633

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---------ETCTQENDILLTTK 701
           ++  G      + + +  NRSGK  + L   + +            +       +   + 
Sbjct: 634 SSSGGYGFLATVENMVSRNRSGKAFITLAEGETLCRPSHVSGASGSQPLPPATHVACAST 693

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             + + F I  I+    +   G+  I L   D +   A 
Sbjct: 694 GQRILTFDIGEIKQM-EKGGRGLMLIDLEDKDTLAGAAA 731


>gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031]
 gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031]
          Length = 744

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 232/745 (31%), Positives = 382/745 (51%), Gaps = 60/745 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGSI +R
Sbjct: 187 HNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E       +I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +    +
Sbjct: 247 ATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301

Query: 312 IELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + + R      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ FR   
Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R        
Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR-------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AIL LRL  L  L  + ++ E + L  E     
Sbjct: 411 ------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL S  RL  +IK+E+     +  +PR +++VE   + +         + V +S +G+V
Sbjct: 453 AILGSERRLNTLIKKEIQEDAKKYASPRMSQLVE-REEAKMISESDMTPVTVILSEMGWV 511

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  +        +  +  D         ++ +V+F  S G  Y      LP 
Sbjct: 512 --------RCAKGHDIDPKSLSYKAGDNYLAHACGKSNQAVVFIDSTGRSYALDPLSLP- 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S +++G+ L   L+L  G  I  ++   E +       ++ A+  G     K  D I  
Sbjct: 563 -SARSQGEPLTGKLNLPTGATIEYVVMASEQQE------LLMASDAGYGFICKFEDLIAR 615

Query: 669 NRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           N++GK  + L    ++L  +        ++  T  G+ + FP   + V +      +  I
Sbjct: 616 NKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMITI 675

Query: 728 ---SLAKGDQVISMAIVLHADADYD 749
              +     ++++  +++   A  +
Sbjct: 676 PAANAKDRSELLTKLLLISDQASLE 700


>gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
 gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
          Length = 735

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/722 (32%), Positives = 373/722 (51%), Gaps = 61/722 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           G+V+GK+HPHG+ A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA RYTE +L K
Sbjct: 61  GDVLGKFHPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSK 120

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E
Sbjct: 121 MAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           +    V ++DNP   L  ++++++GPD+PT A +I  R+ I   Y  GRGSI +R V   
Sbjct: 181 LAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWKR 240

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--EL 314
           E+ +     IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +    ++    
Sbjct: 241 EENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEPR 295

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
                 D +++ L+  T L+  + +NM  +    KP    L+ IL  ++AFR   V RR 
Sbjct: 296 SNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDGKPAVKNLLTILTEWLAFRRTTVTRRL 355

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+K   R H+L GL IA  N+DEV+ IIR   NP   + EL+ R             
Sbjct: 356 NFRLDKIISRLHILEGLMIAFLNIDEVIEIIRNEDNP---KAELIAR------------- 399

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q  AIL LRL  L  L   +++ E   L  E +    IL S
Sbjct: 400 -------------FQLSDEQAEAILNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILGS 446

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             RL  +IK+E+ +      +PRR+ +VE      + + D    E + V +S  G+V+  
Sbjct: 447 ERRLNNLIKKEIEADAKAFASPRRSPLVERAEAKAISESDLTPTEPVTVILSEKGWVRCA 506

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                  Q            +  D         ++  V+F  S G  Y      LP  S 
Sbjct: 507 KGHDIDVQNLS--------YKAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLP--SA 556

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +++G+ +   +SL  G  +  ++   E      +  V+ A+  G     +  D +  N++
Sbjct: 557 RSQGEPITGKISLPDGATVQCVLMAEE------SRKVLMASDSGYGFICQFEDLVSRNKA 610

Query: 672 GKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK  + L    ++L  +     +EN ++  +  G+ + FP+S +   +     G + I++
Sbjct: 611 GKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVSELPELS--KGKGNKIINI 668

Query: 730 AK 731
           + 
Sbjct: 669 SA 670


>gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
 gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
          Length = 767

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/799 (29%), Positives = 376/799 (47%), Gaps = 77/799 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 562 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 615

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
             +     + + +   G     KL+D +   ++GK+ M +DS + +L             
Sbjct: 616 --TGQPEQHYLLSGSGGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I+L +   + + F I  ++V       G++ +SLA+G  +  + +    +       
Sbjct: 674 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLAEGASLEHVMVTTSPEFTVVSVG 731

Query: 753 CYMKHMSAQRRLISGDTEE 771
                   + R+   D + 
Sbjct: 732 RRGAEHQEKLRIADIDGKR 750


>gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
 gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
          Length = 767

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/799 (29%), Positives = 376/799 (47%), Gaps = 77/799 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EPV L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ L++   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 562 QTIEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 615

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
             +     + + +   G     KL+D I   ++GK+ M +DS + +L             
Sbjct: 616 --TGQPEQHYLLSGSGGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SLA+G  +  + +    +       
Sbjct: 674 DCKVVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVG 731

Query: 753 CYMKHMSAQRRLISGDTEE 771
                   + R+   D + 
Sbjct: 732 RRGAEHQEKLRIADIDGKR 750


>gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345]
 gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345]
          Length = 755

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 237/809 (29%), Positives = 401/809 (49%), Gaps = 74/809 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGI 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIK 238
            GIAVGMAT++P HN+ E+V  CV ++DNP  DL  LME + GPD+PT A I+     I 
Sbjct: 177 TGIAVGMATDVPPHNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADIT 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI  R V  +E       ++V+T +P+Q +   +LE+IA  ++ K++  + D
Sbjct: 237 KIYQTGRGSIKARAVYTVENG-----EVVITALPHQASSGKILEQIASQMQAKKLPMVTD 291

Query: 299 LRDESDRQGY--RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V++        + ++  L+  T LQ  + VN+  L    +P+   L+
Sbjct: 292 LRDESDHESPVRMVIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLL 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR   V RR +Y L+K   R H+L  L IA  N+DEV+ IIR++ +P   + 
Sbjct: 352 ELLTEWLTFRMTTVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDP---KA 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ R                            LS+ Q  AIL+L+L  L  L    I+ 
Sbjct: 409 ELISR--------------------------FNLSDKQADAILDLKLRHLAKLEEFKIKA 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +LSS  R+  +IK+EL+   ++    RR+ +VE      + +++ +
Sbjct: 443 EQSELEAERDKLQLLLSSERRMKTLIKKELIKDSEDYGDERRSPLVERTESRALTEQELV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        R  +        +  +  D         ++   +F  
Sbjct: 503 PVESVTVVLSEKGWV--------RCAKGHEVDGKSLSYKAGDGFLRSAQGRSNQPSVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  +  +   LP  S +++G+ +    +L  G  +  ++   E++        + A+ 
Sbjct: 555 TSGRAFATETHTLP--SARSQGEPITTRFNLASGATMEHLLLSDEEQ------CYLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPIS 711
            G        D +  N++GK  + L +  ++L  +   +     IL  T  G+ + F + 
Sbjct: 607 AGYGFICANKDMVSRNKAGKALLSLPANAKVLFPQRVDKSKAQSILAITNEGRMLLFSLD 666

Query: 712 AIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           A+   +       +G+ G      ++++    V+  D            + A +R ++  
Sbjct: 667 ALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTSV--------TLWAGKRKLTLK 718

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             ++   + +    G       Q +   E
Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQRVDSVE 747


>gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1]
 gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1]
          Length = 748

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 242/735 (32%), Positives = 369/735 (50%), Gaps = 61/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPPS---DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG + I     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A   LM
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 415 AR--------------------------FELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---EGLLDMEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +    +        
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +GV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVTELAGVAFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G  +  G  +  ++ L+ G  I   +P+  +        ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGG--RGFGDPVRLMVDLDDGTEIVAALPYKPESK------LLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     + +    + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPA-EGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVR 725
           S +         GVR
Sbjct: 672 SEVTELG--RGKGVR 684


>gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
 gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
          Length = 802

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 267/750 (35%), Positives = 405/750 (54%), Gaps = 54/750 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKK 70
           E   I  V I+D  +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M   + +  N K
Sbjct: 20  ESDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAK 79

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
             KCA+I G+  G YHPHG+A++YDAL R+AQD++LR  LI GQGNFGS+ G P AA RY
Sbjct: 80  PRKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARY 139

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  L+++L   TV+ RPNYDG+  EPVVL AR+PN+LVNG  GIAVGMATNI
Sbjct: 140 TEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNI 199

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIV 249
           P HNLGEV+  CV +I + D  +  LM+ I+GPDFP G  I+  +  +   Y  GRG + 
Sbjct: 200 PPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVK 259

Query: 250 IRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQ 306
           +RG    E  +  +  +++VV  +PY V   ++L +I  +V  +++  + D+ DE+ D+ 
Sbjct: 260 VRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKN 319

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-----PERFTLIGILKAF 361
           G ++V+E+K  A  + ++  LY++T+L+  FSVNM  L   +     P R  L  +L+ F
Sbjct: 320 GLKIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYF 379

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V +R +Y L     R H+L G AI   +LD+ +++IR S   + A ++LM   
Sbjct: 380 LDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN- 438

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L E+QT AILEL+L R++ L  + IR EL    
Sbjct: 439 -------------------------FPLDEIQTMAILELQLYRISKLEINTIREELAEKE 473

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMV 539
            E ++   IL+S  RL  +++ EL  + DE    R+T++   E + + + +  IVRE+  
Sbjct: 474 AEAEKIRKILASDKRLWKVVENELKELADEFPEKRQTKLGSSEEITEFDPQAYIVRENTN 533

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V VS  G++KRV        + G +  +    R+ D V  +   ST   V+FFSS G  Y
Sbjct: 534 VVVSREGWIKRVGR---LKTKEGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVAY 590

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-----FPEDESSWNN----LYVVF 650
              + ++P+ S    G+ L     ++ G  +   +       PED+++        +V+ 
Sbjct: 591 TLPIEQVPVSS--GYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTPHVLI 648

Query: 651 ATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            T+ G   R   S F     ++G+   +L   D ++      +   + + T+  + +   
Sbjct: 649 VTEKGQFMRISFSLFRTASTKAGRKYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHCE 708

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           I    + +     GV+GI L KGDQVI + 
Sbjct: 709 IEEAALLS-NAGKGVKGIRLEKGDQVIGVL 737



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 23/219 (10%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--- 746
             +EN  ++ ++ G   R      R+     +  +      +GD V+++A     D    
Sbjct: 527 IVRENTNVVVSREGWIKRV----GRLKTKEGTQELAKTRTREGDSVLAVAPGSTLDHVVF 582

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLK 796
              D     +           G+     +  +D +V              ++  ++  L 
Sbjct: 583 FSSDGVAYTLPIEQVPVSSGYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLP 642

Query: 797 EQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +L V+EKG   R S   FR  S ++G+        ++ +   +V    V + + + +
Sbjct: 643 TPHVLIVTEKGQFMRISFSLFRTASTKAGRKYC-----RLGKDDRVVYAGLVEEAETMFI 697

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +    ++   + E  + S A KGV      K ++V+ V
Sbjct: 698 ATQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGV 736


>gi|218133090|ref|ZP_03461894.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991963|gb|EEC57967.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 255/775 (32%), Positives = 410/775 (52%), Gaps = 53/775 (6%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +I  +    + I     ++ MQ SY+ Y+++VI  RA+PD RDGLKPV RR+L+ M Q+G
Sbjct: 1   MIEMETIMAEQIVKTEYSELMQKSYIDYSMSVITARALPDARDGLKPVQRRVLYAMDQLG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + ++K + K ARI G+ MGKYHPHG+++IY+ L  + QD+   + L++G GNFGS++GD 
Sbjct: 61  LNYDKPHRKSARIVGDTMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDG 120

Query: 125 PAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            AA RYTE +L+K    +   DL KD VDF PN+D + +EP VL  R PN+L+NG  GIA
Sbjct: 121 AAAMRYTEAKLKKFTQDVYLADLDKDVVDFIPNFDETEKEPEVLPVRVPNLLINGAEGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGM TNIPTHNLGEVVD C A +D+ +I  + LME + GPDFPTG +++ ++ +   Y +
Sbjct: 181 VGMTTNIPTHNLGEVVDACCAYMDDENITTEGLMEYVIGPDFPTGGLVVNKSELPAIYES 240

Query: 244 GRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIAD 298
           G G I +RG    E      +R+++V+TEIPY +   N    L  + +LV  K+  DI D
Sbjct: 241 GTGKIKLRGKVVFEPAAKKSERDKLVITEIPYTMIGANIGKFLSDVIDLVETKKTSDIVD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + +ES ++G R+V+ELKR A  + + N LY+ T L+  F VNM+A+   KPE   L  I+
Sbjct: 301 ISNESSKEGIRIVLELKRNADVEKLKNMLYKKTKLEDTFGVNMLAIVDGKPETLGLKSII 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K  + F+ ++  R+   LL + RD   +  GL  A   +D ++ I+R   N   A+  L+
Sbjct: 361 KHHIDFQYQLATRKYNTLLARERDNKEIQEGLIKACDIIDLIIEILRGCKNRSQAKDCLV 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             +    + K              +   ++ +E Q  AILELRL RL GL   +++ +  
Sbjct: 421 NGNVKDINFKSETSR--------KAASGLHFTERQASAILELRLYRLIGLEILELQKQYE 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
               +I E   IL SR+ +  +IK++L ++K E   PR+T I +    + +E+ +  +++
Sbjct: 473 QTLKKIAEYEKILGSRTAMKNVIKKDLQAIKKEYALPRKTVIEDAKAAVFEEEKVKEQEV 532

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V  +   GY K + ++ Y          +            +F       +  F+  G +
Sbjct: 533 VFIMDRFGYSKTIDIAAYERNMEAVHNENKY----------IFKCMNTDKIYIFTDNGNL 582

Query: 599 YKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           ++ KV  LP    + +G  + N+ + +  GE I     F     +     ++F TK G +
Sbjct: 583 HQIKVMDLPFTKFRDKGVPIDNVGNYDSSGENIV----FLSAAGNITGCKLLFVTKQGMM 638

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSV----------------------ETCTQEND 695
           +    S+F    ++   A KL   D I ++                      E      +
Sbjct: 639 KLVDTSEFEASKKT-VAATKLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQN 697

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +++ T+ G  ++FP++ I     +N+VGVRGI L K D V  + ++ + +    E
Sbjct: 698 VVVRTENGVFLKFPLTEI-PQKKKNAVGVRGIKLVKDDTVDDVYLIGNTEDVSTE 751



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 16/152 (10%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS---- 823
           D         +    G           +    +L V+++G  K   + +F  S ++    
Sbjct: 597 DKGVPIDNVGNYDSSGENIVFLSAAGNITGCKLLFVTKQGMMKLVDTSEFEASKKTVAAT 656

Query: 824 ----GKGIRAT--------DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               G  I A           S+ N  G++     +  +  +++ ++ G  ++ P+ EI 
Sbjct: 657 KLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQNVVVRTENGVFLKFPLTEIP 716

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +   GV      KD+ V  V  I  +E V
Sbjct: 717 QKKKNAVGVRGIKLVKDDTVDDVYLIGNTEDV 748


>gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5]
 gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5]
          Length = 738

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/768 (31%), Positives = 395/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDG+  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15]
 gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000]
 gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15]
 gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000]
          Length = 759

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 249/732 (34%), Positives = 377/732 (51%), Gaps = 65/732 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    +T+ +   YL YA++ I  RA+PD+RDGLKPVHRR+L+ M  M +  +    KC
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ GEVMG +HPHG+A+IYDAL R+AQ++S R+ L+EGQGNFG++DGD  AA RYTEC+
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +AA  LLD + +D VDFRP YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
             E++D C  ++ NPD     L+E + GPDFPTG VI+  R  +   Y TGRG + +R  
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES      V+  
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEP 316

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRR 372
             +    +V++  L++ ++L+S F VN+  L+    P    +   L AF+A R EV+ RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K   R H+L GL IA  NLDEV+RI+R+   P+                     
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKE-------------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L+++Q  AIL  RL +L  L   +IR E   L  E    L +L+
Sbjct: 417 ---------KLIETFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILAMLA 467

Query: 493 SRSRLLG-------IIKQELLSVKDELDTPR------RTRIVEGLL---DMEDEDCIVRE 536
           S ++           ++  LL +K  LD PR      R+   E      D   E  IVRE
Sbjct: 468 SEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDADAAIEAMIVRE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA +      S +  ++ D +  L    T   +L FSS G
Sbjct: 528 PITIILSERGWI--------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKLLIFSSDG 579

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             +     +LP  S +  G+ +  ++ L+   +I  + PF            + A+K G 
Sbjct: 580 RFFTLGCDKLP--SARGHGEPVRMMIELDDKVKIIDVFPFKAGRKR------ILASKGGY 631

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                  + +   ++GK  + +   +E  +       + + +    G+ + FP+  +   
Sbjct: 632 GFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIFPLEELPEM 689

Query: 717 AGRNSVGVRGIS 728
                V ++   
Sbjct: 690 PRGKGVKLQAYR 701


>gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 777

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 270/758 (35%), Positives = 406/758 (53%), Gaps = 76/758 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74
             ++ + +  +  YL YA++VI  RA+PD+RDGLKPV RRILF M   + +  +K++ K 
Sbjct: 4   TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GE MGKYHPHG+ AIYDA+ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE +
Sbjct: 64  ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           LQ  A  +L+ L  +TVD+R N+DGS +EPVVL AR PN+LVNG  GIAVGMATNIP HN
Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRG 252
           LGEVVD  + +I+ P++D   L+ + I+GPDFPTG  IL     +   Y TG G+I +RG
Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                  +  + + ++  +PY V+K+ ++E+IA+ + E+ +  ++++RDES     R+V+
Sbjct: 244 AYR----TKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDD-VRIVL 298

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFRE 366
           ELKRG+  +  +  L+++T LQ  F VN+  L      +   P++  L  IL+ F+ FR 
Sbjct: 299 ELKRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR +  L +   R H+L G       LDE + IIR S N   A + LM R      
Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E QT AILE +L +L+ +  + IR+EL       +E
Sbjct: 413 --------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEKRARAEE 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
              +L       GI+K EL  ++DE    RR+ +V  E  ++  +ED IV ED+ V V+ 
Sbjct: 453 IRRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPEADMEYTEEDYIVDEDVHVIVTR 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKR                  +  RD D V      ST  +V FF++ G  Y  ++ 
Sbjct: 513 DGWVKRQ---------GTYSDLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTTRIT 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE---------------------DESSW 643
            +P       G  +  + S + GE +  ++ F +                     D  + 
Sbjct: 564 EIPST--TGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDAP 621

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           +  YVV  +K G   R  L  +++ +  +G+  M+L+  DE+  V     + +I L +  
Sbjct: 622 DQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENICLASHD 681

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           G+ + FP+  + V+ G  + GVR I L   D+V+  A+
Sbjct: 682 GRALVFPVHQVSVYKGP-AKGVRAIRLEDNDRVLDFAL 718



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 41/264 (15%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M + E++   +    V  T+ G V+R       Q   S   A++    DE+      +  
Sbjct: 493 MEYTEEDYIVDEDVHVIVTRDGWVKR-------QGTYSDLDAIRTRDGDEVGWALAGSTR 545

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   T  G C    I+ I    G      +  S   G+ V+ +               
Sbjct: 546 ATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGV--------------- 590

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                      +S D   +         E     +        + +++ +S+ G   R +
Sbjct: 591 -----------VSFDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFT 639

Query: 814 SYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
              +     +   K +R  D  +      +  V     ++ I L S  G  +  PV+++ 
Sbjct: 640 LDGYLEPSISTGRKYMRLEDGDE------VARVHLARGDENICLASHDGRALVFPVHQVS 693

Query: 872 IASRATKGVVIFSTAKDERVVSVE 895
           +     KGV       ++RV+   
Sbjct: 694 VYKGPAKGVRAIRLEDNDRVLDFA 717


>gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE]
 gi|294836969|ref|ZP_06781652.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6013113]
 gi|294857647|ref|ZP_06795416.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6013150]
 gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE]
          Length = 739

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 369/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
 gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
          Length = 750

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 369/742 (49%), Gaps = 58/742 (7%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +    + D    + +  V + + ++  YLTYA++ I GRA+PD RDGLKPVHRRIL+G
Sbjct: 1   MAKSGTPAGDAGGGEALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  + +  +  + KCA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG+
Sbjct: 61  MQTLRLAPDAPFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+   A  LL+ + +D +DFRPNY G  QEPVVL A  PN+L NG 
Sbjct: 121 VDGDAAAAYRYTEARMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT++P HNL E+ D  + +I + +   + LM  ++GPDFPTG V++  R  I 
Sbjct: 181 QGIAVGMATSVPPHNLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIV 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS  +R   H E+T+  +   VVTEIPY V K+ ++EK+AEL+ +K+     D
Sbjct: 241 ETYRTGRGSFRLRARWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGI 357
           +RDES      V+    R     +++  L++ + L+  F VNM  L     P   +L   
Sbjct: 301 VRDESAEDVRVVIEPRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDEA 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R EV+ RR+++ L     R  VL G+ I   NLDEV+RIIR    P+ A +  
Sbjct: 361 LRQWLDHRREVLERRSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQALK-- 418

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L++VQ   IL+ RL  L  L   ++R E 
Sbjct: 419 ---------------------------SAFDLTDVQVDYILDTRLRALRRLEEMELRKER 451

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCI 533
             L  E  E   +L+  ++    I  ++  +K  +  P    RRT   +     + +   
Sbjct: 452 EKLIEERAEIEGLLAEEAKQWKAITAQIRELKKTVGDPRLAKRRTTFEDAPEATDIDLAE 511

Query: 534 V---REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
               RE + V VS  G++        RA +      S +  + +D +   F   T + VL
Sbjct: 512 ALIEREPITVVVSQKGWI--------RALKGHVSDLSQLQFKGDDALDFSFFAQTTSKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G  +     +LP G  +  G+ +  +  +++   I  +     D        ++ 
Sbjct: 564 ALASNGKAFTLDASKLPGG--RGHGEPIRLMAEIDEDAAIVKVFLHTPD------ALLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G       +D +   R G+    +D   ++  V    + + + +  +  + + FP+
Sbjct: 616 VSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLKIVAPA-EGDHVAIIGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S     A     GVR      G
Sbjct: 675 SEAPQMA--RGKGVRLQRYKDG 694



 Score = 41.4 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 82/244 (33%), Gaps = 27/244 (11%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRV 715
           ++      +   R+        +  ++       +E   ++ ++ G  + ++  +S +  
Sbjct: 483 KKTVGDPRLAKRRTTFEDAPEATDIDLAEA-LIEREPITVVVSQKGWIRALKGHVSDLSQ 541

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                          KGD  +  +      +         K  +     + G       +
Sbjct: 542 LQF------------KGDDALDFSFFAQTTSKVLALASNGKAFTLDASKLPGGRGHGEPI 589

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +  + ++ + +  +   L   +  +L VS+ G G   S  D   + R G+ +   D    
Sbjct: 590 RLMAEIDEDAAIVKVF-LHTPDALLLLVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAK 648

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----DERV 891
            +I A        + D + ++ +   L+  P++E    +R  KGV +         D +V
Sbjct: 649 LKIVAPA------EGDHVAIIGENRKLLVFPLSEAPQMARG-KGVRLQRYKDGGVADAKV 701

Query: 892 VSVE 895
            ++ 
Sbjct: 702 FALA 705


>gi|145594226|ref|YP_001158523.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
 gi|145303563|gb|ABP54145.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
          Length = 827

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 268/836 (32%), Positives = 397/836 (47%), Gaps = 54/836 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S+ ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G 
Sbjct: 11  LSAFDQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGH 70

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR+ G+VMGKYHPH + AIYDAL R+AQD+SL   LI+G GNFGS D D P
Sbjct: 71  RPDRGHVKSARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNAPLIDGHGNFGSPD-DGP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ + A  L+ +LG++TVD  PNYDGS  +P VL A +PN+LVNG  GIAVG
Sbjct: 130 AAARYTEARMSREAMLLVGELGEETVDLGPNYDGSLTQPTVLPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY TGR
Sbjct: 190 MATNMIPHNLGEVVSAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGR 249

Query: 246 GSIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKI-AELVREKRIVDIADLRDE 302
           G + +R    I    G   R+ I V E+PY +    ++  +  E+ + KR+  IAD++D 
Sbjct: 250 GVVRMRAKVEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDL 309

Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR+   R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F
Sbjct: 310 TDRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVF 369

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A R EVV RR+ Y   +  +R H++ GL +A+ ++D+VV++IR S + + A+  LM+R 
Sbjct: 370 LAHRYEVVTRRSAYRKRRREERLHLVDGLLVALLDIDQVVKLIRGSEDAQAAKDGLMRR- 428

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+Q   IL+  L RLT   R ++  E   L 
Sbjct: 429 -------------------------FGLSEIQATYILDTPLRRLTRYDRLELEAEQEKLR 463

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------- 534
            EI E   +L     L  ++  EL +V  +   PRRT +V+G L       +        
Sbjct: 464 GEITELSRLLDDPKVLRKVVSTELAAVVRQFAAPRRTTLVDGDLKEVLAASVPAGPLEVA 523

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +   V +S  G V R       A     +G         D V  +   +    VL  +S
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEA----VEGHRRHGRVRHDAVRAVAHSTARGKVLLVTS 579

Query: 595 LGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G  +K  V  LP+   Q+       G +   ++ L  GE +  I P            +
Sbjct: 580 GGRAFKVDVLPLPVLPDQSGTVSLRGGMSAAELVPLAPGETVVGIAPLGAPAEGSPG--L 637

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVR 707
              T+ G V+         +       + L   DE++           +   T     +R
Sbjct: 638 ALGTRQGMVKVCAPDW--PVRADEFEVISLRDGDEVVGTTWLTDGAESLAFVTSEASLLR 695

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           +P+  +R    R   GV G+SL    +V+    V   D  + E +      +  +     
Sbjct: 696 YPVGLVRPQGLRGG-GVAGVSLPGDARVVYFGAVRTDDPAHGEPMVVTSTGATVKVTPFA 754

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                         +  +  E    +       +  +  G      + D R     
Sbjct: 755 AYPAKGRATGGVRSQRFLKGETEAAVAWVGPRPVGATANGEPVELPAADPRRDGSG 810



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 88/271 (32%), Gaps = 28/271 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQI---NRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R        +    R G++       D + +V   T    +LL T
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEAVEGHRRHGRVR-----HDAVRAVAHSTARGKVLLVT 578

Query: 701 KLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADYDERI 752
             G+  +  +  + V   ++       G+     + LA G+ V+ +A +           
Sbjct: 579 SGGRAFKVDVLPLPVLPDQSGTVSLRGGMSAAELVPLAPGETVVGIAPLGAPAEGSPGLA 638

Query: 753 CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +       A    +  D  E+ SL++   V G         L    + +  V+ +  
Sbjct: 639 LGTRQGMVKVCAPDWPVRADEFEVISLRDGDEVVGTT------WLTDGAESLAFVTSEAS 692

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKG-TLIRVP 866
             R      R     G G+    +     +    AV   +    + ++V+  G T+   P
Sbjct: 693 LLRYPVGLVRPQGLRGGGVAGVSLPGDARVVYFGAVRTDDPAHGEPMVVTSTGATVKVTP 752

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                   RAT GV      K E   +V  +
Sbjct: 753 FAAYPAKGRATGGVRSQRFLKGETEAAVAWV 783


>gi|293363538|ref|ZP_06610294.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
 gi|292552887|gb|EFF41641.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
          Length = 880

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 251/807 (31%), Positives = 421/807 (52%), Gaps = 44/807 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++++ + I + S+   M   +  Y+  +I  RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   ENQQKLEKIINNSLDKIMAEKFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTS 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K AR+ G+V+GKYHPHG+ ++YDA+  M+Q W   + L++  GN GS+D DP AA
Sbjct: 64  DKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKNGIALLDMHGNVGSLDNDPAAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K  +++LDDL K+TV F PN+D S +EP VL + +PN+LVNG  GIA+GMA
Sbjct: 124 MRYTEVRMSKICNYMLDDLKKNTVSFIPNFDDSEKEPSVLPSIFPNLLVNGTTGIAIGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG--- 244
           T +P HNL EV++  +A +  P I LD LME I+GPDFPTG +I G  GI  A+  G   
Sbjct: 184 TEMPPHNLNEVLEATIAKLKRPTITLDGLMEHIKGPDFPTGGIIYGNKGIFEAFYNGKLD 243

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +  I +     +++T  ++  I +TEIP+ V K+ ++  I  L+  + I  + +++D+SD
Sbjct: 244 KEKIKLFSNYTVKQTDKNK-LIEITEIPFGVVKSQLVYDIDVLINNESIDGLLEIKDQSD 302

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VI L + A+ + I++ L + TS+Q  +S N V ++   P+   L  +L A++A 
Sbjct: 303 REGIRIVITLSKDANEESIISFLLQKTSMQVNYSYNNVVISNNSPKLMNLNELLDAYIAH 362

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            ++V  +   Y  NK   R  +++G        D V+++IR S   +            +
Sbjct: 363 IKDVKTKTLTYDYNKYLLRLEIVLGFLKVAEITDAVIKVIRNSEGSK------------S 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             IK L +             +   S+ Q  AI ELRL RL+   +     E   L   I
Sbjct: 411 GVIKALKE-------------SFGFSQNQATAIAELRLYRLSKTDKQAFLIEKAELEKNI 457

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTV 542
               ++LS   + +G + + L  +  E+ TPR+T+IV        + +D +  E + ++ 
Sbjct: 458 ANIKELLSDEKKFVGYLIELLRGIIKEIPTPRKTQIVAEEFSFNHDKKDLVKEEIVNISF 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KR+   +  +           ++++ED +      +T  ++L F++LG      
Sbjct: 518 SKNGYIKRLSQKIIDSNS-----PESYMLKEEDNLVFFDKSNTMHNILIFTNLGNYAIIP 572

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+++     +  G  L + ++L  GE I  ++     E      YVV  +K G  ++  +
Sbjct: 573 VYKILESKWKDLGTHLSDFVALYPGESIVNVIDV---EDWNVGDYVVIMSKQGYAKKTLI 629

Query: 663 SDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           SDF   +IN+S   A+K+D  DEI++V       DIL+ T +G   ++  + + ++    
Sbjct: 630 SDFEVSRINKSY-TALKIDKNDEIVNVALSDGTKDILIVTAMGYTSKYNENDLNIYGP-K 687

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + G + + L+  D V S  +V   D         Y K M A+  L    T +   +  + 
Sbjct: 688 AKGSKAVYLSNKDYVASFEMVKFNDTVSMLTDDGYFKKMKAKDILYVPKTNKGKEIFKNR 747

Query: 780 SVEGNISEERCQELKLKEQFILTVSEK 806
            +      +    L   E +I T + +
Sbjct: 748 KLNPFFVTDMFSSLNETEFWIKTETNE 774



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 81/223 (36%), Gaps = 23/223 (10%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA--------I 740
              +E   +  +K G   R     I   +           L + D ++           +
Sbjct: 507 LVKEEIVNISFSKNGYIKRLSQKIIDSNSPE------SYMLKEEDNLVFFDKSNTMHNIL 560

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y     Y    S  + L +  ++ +     +S V     E+          ++
Sbjct: 561 IFTNLGNYAIIPVYKILESKWKDLGTHLSDFVALYPGESIVNVIDVED-----WNVGDYV 615

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + +S++G+ K+T   DF +S R  K   A  + K +E   +V V   +    I++V+  G
Sbjct: 616 VIMSKQGYAKKTLISDFEVS-RINKSYTALKIDKNDE---IVNVALSDGTKDILIVTAMG 671

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +   N++ I     KG      +  + V S E ++ ++ V
Sbjct: 672 YTSKYNENDLNIYGPKAKGSKAVYLSNKDYVASFEMVKFNDTV 714


>gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H]
 gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H]
          Length = 736

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/725 (32%), Positives = 364/725 (50%), Gaps = 56/725 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + + +   Y+ YA++ I+ R++PD+RDGLKPVHRR+L+ M Q+ ++    + KC
Sbjct: 8   HIEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPTSGFKKC 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GK+HPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE R
Sbjct: 68  ARVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAMRYTESR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LLD +  D VDFR  YD    EP+VL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 128 LTEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMATSIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
             E+      +I+ PD+ +  L++++ GPDFPTG +++  R  I  +Y TGRGS   R  
Sbjct: 188 AAEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGSFRTRAR 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+       I+VTEIPYQV K+ ++E+IA+L+ ++++  + D+RDES      V+  
Sbjct: 248 WEVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTTDIRLVLEP 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEVVVRR 372
             +G   +V++  L+R T+L++ FS+NM  L G +     +L  +L+A++    EV+VRR
Sbjct: 308 KTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVHEVLVRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L     R  +L G      NLDEV+RIIR    P+                     
Sbjct: 368 SNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPK--------------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                   +    T  L++VQ  A+L +RL  L  L   +IR E + L  E K    +L 
Sbjct: 407 --------VSLMATFSLTDVQAEAVLNMRLRSLRRLEEMEIRRERDKLADEQKALETLLG 458

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLG 546
           S  R    I ++L     +        RRT I       D+     I RE + V +S  G
Sbjct: 459 SERRRWTRIGKDLDGTIKKFGSGPLGERRTLIAAAPELIDISAALEIDREPLTVLLSREG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +  G    G   ++ D         +   +   SS G  Y  K   L
Sbjct: 519 WI--------RAMKGHGLDPQGHRFKEGDEGWLSVECQSTDRLCLISSSGKAYTIKAADL 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+    ++ + Q +R+ T+ P  ++         + A+  G       +  +
Sbjct: 571 PRG--RGFGQPFRTVVDVPQEDRVVTLFPVSDEGRR------LIASAAGRGMIVSEAGLV 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+GK    +   DE+ +         +L   +  + + FP+  +         GV  
Sbjct: 623 AEKRTGKQVFNIKDGDEVFACVPV-GGTHVLTLGQNKRALIFPLEQVPEMT--RGGGVAF 679

Query: 727 ISLAK 731
             L  
Sbjct: 680 QKLGD 684


>gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2]
 gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2]
          Length = 750

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 243/742 (32%), Positives = 373/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +         G   V++ + ++  YL YA++ I+GRA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKTVSPPAPPSSGGTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 61  QILRLDPGTAFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D+VDFR NY G  QEPVVL +  PN+L NG  
Sbjct: 121 DGDGAAAYRYTEARMTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGAQ 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HNL E+ D  + ++ + D   D L+    GPDFPTG V++  +  I  
Sbjct: 181 GIAVGMATSIPPHNLAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIAE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRGS+ +R     E+ +     IVVTEIPY V K+ ++EKIAEL+ +K++  +AD+
Sbjct: 241 TYRTGRGSLRLRARWSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVADI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R     +++  L+R T L++ F VN+  L     P   +    L
Sbjct: 301 RDESAEDVRVVIEPKSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEAL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R EV+VRR ++ L +   R  +L G+ I   NLDEV+RIIR    P+       
Sbjct: 361 QQWLDHRREVLVRRARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEPKE------ 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LS++Q   +L+ RL  L  L    I+ E  
Sbjct: 415 -----------------------RLQLAFSLSDMQVNYVLDTRLRSLRRLEEMQIQREHE 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMEDED-- 531
           +L  E  E   +L+  +R    I  E+  +K +         RRT   E     E +   
Sbjct: 452 ALEKEKLELEALLADEARQWKKIAAEIRDLKKKYGPETKLGRRRTSFAEAPDVGEIDFAS 511

Query: 532 -CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V VS  G++        RA +      SG+  + +D +   F   T + +L
Sbjct: 512 AMVEREPVTVVVSEKGWI--------RALKGQVADLSGLQFKGDDSLHISFFAETTSKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G ++     +LP G  +++G+ L  +  + +GE +  + P+   +       ++ 
Sbjct: 564 VLSGDGKIFTLDAGKLPGG--RSQGEPLRLLADIGEGESVAAVFPYAPGQK------MLV 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G        + I   R GK+ + +  +  I  +      + + +  +  + + FP+
Sbjct: 616 ATDDGRGFVVSQDEMIGGTRKGKLLLNV-EKPGIAKIIVPADGDHVAIIGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A     GVR      G
Sbjct: 675 DQVPEMA--RGKGVRLQKYRDG 694


>gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 753

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 240/743 (32%), Positives = 371/743 (49%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWAQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R     +++  L+R T L+S  S+N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRIVIEPKSRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEAL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ +   +   R  VL G  IA  N+DEV+RIIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSNHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L+E+Q  AIL +RL  L  L   +I+ E  
Sbjct: 413 ------------------------LMKTFNLTEIQAEAILNMRLRSLRKLEEFEIKKEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
            L  E+K    +L S +     + +++  V++          RRT+  +         +E
Sbjct: 449 DLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDKLGQSFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y   V +LP G  +  G+ +   + + Q   I T+               + 
Sbjct: 561 LLATNGRFYALDVAKLPGG--RGHGEPIRMFIDMEQDAAIVTVFV------HTGGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFP 709
           A+  G        + +   R GK  + +D  +E  ++      ++ + +     + V FP
Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +         GVR      G
Sbjct: 673 LDQVPEMT--RGRGVRLQKYKDG 693



 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    +  L  S  G G   +  +   S R GK I   D+        +V+      +D 
Sbjct: 603 VHTGGRKFLIASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVS----EGDDS 658

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + ++ D   ++  P++++   +R  +GV +      
Sbjct: 659 VAVIGDNRKMVIFPLDQVPEMTRG-RGVRLQKYKDG 693


>gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|294840502|ref|ZP_06785185.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6014059]
 gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056]
 gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059]
 gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 739

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 369/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 738

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 246/769 (31%), Positives = 394/769 (51%), Gaps = 61/769 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
            HNL E+ D  V +ID +P  +++ +M  I+GPDFPTG +I+ +   I  AY TGRGS+ 
Sbjct: 182 PHNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      
Sbjct: 242 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRL 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           ++    R     +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +
Sbjct: 302 IIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                 
Sbjct: 362 VTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAI--------------- 406

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE  +L  +     
Sbjct: 407 --------------MMERFKLTEIQVEAILNTRLRSLRKLEEQEIINEHGNLQKQQAILE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVV 540
           +IL++   L  ++K+E+ +V+ +         RRT   E  L    ++    I +E + +
Sbjct: 453 EILNNPKELWKVVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 513 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 564

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G     
Sbjct: 565 LLADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLV 615

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I     + 
Sbjct: 616 NSNEVMAQTKTGKQIMNIPDGHACIACLPVNG-DSIACIGESRKLLVFNIDEIPEM--KK 672

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             GV      K  +++ + I    D         +K        +    
Sbjct: 673 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 720


>gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
 gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
          Length = 749

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 233/723 (32%), Positives = 372/723 (51%), Gaps = 59/723 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+
Sbjct: 16  LRSFTEKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAA 139
           V+GK+HPHG+ A Y+A+  MAQ +S R  LI+GQGN+GS D     AA RYTE RL + A
Sbjct: 76  VLGKFHPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQDDPKSFAAMRYTESRLTRYA 135

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL +L   TVD+ PN+D + +EP  L AR PN+L+NG  GIAVGMAT+IP+HNL EVV
Sbjct: 136 HALLTELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEVV 195

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           + C+ ++D P+  L  L  +I+GPDFP+ A +I  R+ +   Y  G G I  R +   E 
Sbjct: 196 NACIRLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIYREE- 254

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKR 316
               + QI++T +PYQV+ A ++E+IAE +R+K++  I DLRDESD +     V+I    
Sbjct: 255 ----KNQIIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRSS 310

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKY 375
               D +++ L+  T L+  + +N+  +    +P+   L  IL+ ++ +R+  V +R ++
Sbjct: 311 RVDTDALMDHLFATTDLERSYRINLNMIGLDGRPQVKNLRAILQEWLEYRQTTVKKRLEF 370

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNK   R H+L G  I   +LDEV+ +IR   +P+T                       
Sbjct: 371 HLNKILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKT----------------------- 407

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q  AILE+RL +L  L    +R E  SL  E      ILSS++
Sbjct: 408 ------QLMRHYKLSDIQADAILEIRLRQLAKLEEIKLRAEQKSLIAERDNLQKILSSKT 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           +L  +I+ EL          RR+  VE      ++  + I  E M V +S  G++     
Sbjct: 462 QLKRLIRSELQEDAKRYGDLRRSPFVERRAAQALQKTEIISSEPMTVILSTRGWI----- 516

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              RA +      SG+  +  D +    +  ++  ++   S G  Y   +  LP  S ++
Sbjct: 517 ---RAAKGHDFDVSGLSFKAGDALKSTVLGRSNQLLVLMDSTGRSYSTPLHSLP--SARS 571

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L +  +   G +  +++    D++      +V ++  G     +LS+    NR+GK
Sbjct: 572 SGEPLTSRFNPPPGVQFESMISGNPDQA------IVVSSDAGYGFITQLSEMYSKNRNGK 625

Query: 674 IAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +KL +   +L +      +   + L T  G  +      +   +      +  IS  K
Sbjct: 626 SLLKLSAHAHVLPLLALNAIDSSYVALATNTGYLLIISAYELPQLSRGKGNKMMQISSKK 685

Query: 732 GDQ 734
            +Q
Sbjct: 686 REQ 688


>gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
 gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
          Length = 767

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/799 (29%), Positives = 375/799 (46%), Gaps = 77/799 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI S+      G   + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHI-SAPSPSPVGEDYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    ++ +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLMIKEMQADMKQYGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 562 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPISSLIELQNGAKPIAML---- 615

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
             +     + + +   G     KL D +   ++GK+ M +DS + +L             
Sbjct: 616 --TGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SL  G  +  + +   A+   +   
Sbjct: 674 DCKVVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTDGASLEHVLVTTAAEFIVETVG 731

Query: 753 CYMKHMSAQRRLISGDTEE 771
                   + R+   D + 
Sbjct: 732 KRGAAHQEKLRICDIDGKR 750


>gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900]
          Length = 739

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 369/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   +    +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE]
          Length = 745

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 369/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 12  HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 72  KSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 131

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 132 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 191

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 192 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 252 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 306

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 307 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 366

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 367 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 413 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 457

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 458 REQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 517

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 518 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 569

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 570 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 621

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 622 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 679

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 680 LIQLEGKEQILSMTTLNLDE 699


>gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 749

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 246/740 (33%), Positives = 372/740 (50%), Gaps = 61/740 (8%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+ I+  D      I  V     ++  YL YA++ I+ RA+PD+RDGLKPVHRRIL+ M 
Sbjct: 3   TKPILPGDGP----IEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAMR 58

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++ +     Y+KCA+I GEVMG YHPHGN AIYDALAR+AQD+++R  L++GQGNFG++D
Sbjct: 59  ELRLNPEGGYIKCAKIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNID 118

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAAERYTE R+ + A  +L+ + +DTV+FRPNYDG  +EPVVL A +PN+L NG  G
Sbjct: 119 GDNPAAERYTEARMTETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGASG 178

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNA 240
           IAVGMATNIP HN+ E+    + +I +P+  ++ L+E++ GPDFPTG VI+  R  I  A
Sbjct: 179 IAVGMATNIPPHNVDELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILEA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG   +R     E T+    QIVVTEIPY V KA ++EKIAEL+ +K++  + D+R
Sbjct: 239 YKTGRGGFRVRARWSKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDVR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILK 359
           DES  +   V+    R     +++  ++R + L+    +NM  L+  + P    L  +L 
Sbjct: 299 DESAEEIRLVLEPKTRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDVLW 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV+VRR+ + L K   R  VL G  IA  N+DEV+RIIR   +P+        
Sbjct: 359 QWLEHRIEVLVRRSTHRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKA------- 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LS+VQ  AIL LRL  L+ L   +IR+E + 
Sbjct: 412 ----------------------KLIAKFKLSDVQAEAILNLRLRSLSRLEEVEIRSEHDK 449

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDC 532
           L  E +E   +L S       +  E+ + ++          RR+   +      D     
Sbjct: 450 LSKERRELKQLLKSEELQWEHVSNEVKTTREAYSKKTAIGRRRSTFADAPEVEVDLATAL 509

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           + +E + V +S  G+V        R  +      S +  +  D +       T   ++  
Sbjct: 510 VEKEPVTVILSEKGWV--------RTLKGHQDDLSKLDFKQGDALKRAIKALTTDKLVLL 561

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G  +  +   LP G  +  G+ +  ++ L +   I  +           +  ++ A+
Sbjct: 562 TTNGKFFTLEANALPGG--RGHGEPVRLMIDLEENHDIVEVFV------HDPSRKLLVAS 613

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G        + I   R GK  + +   DE   V    + + +       + + F I  
Sbjct: 614 TAGYGFIVPEEEVIASTRKGKQVLNVSEPDE-ARVCVPAEGDYVATVGDNRKLLVFKIDE 672

Query: 713 IRVFAGRNSVGVRGISLAKG 732
           +         GV       G
Sbjct: 673 VNEMT--RGKGVILQRFKDG 690



 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 77/236 (32%), Gaps = 27/236 (11%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLG--QCVRFPISAI 713
           +     + +    G+         E+   L+     +E   ++ ++ G  + ++     +
Sbjct: 476 KTTREAYSKKTAIGRRRSTFADAPEVEVDLATALVEKEPVTVILSEKGWVRTLKGHQDDL 535

Query: 714 RVFAGRNSVGV-RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                +    + R I     D+++ +           +      +     R        +
Sbjct: 536 SKLDFKQGDALKRAIKALTTDKLVLLT-------TNGKFFTLEANALPGGRGHGEPVRLM 588

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             L+ +  +      +  ++       +L  S  G+G      +   S R GK +   +V
Sbjct: 589 IDLEENHDIVEVFVHDPSRK-------LLVASTAGYGFIVPEEEVIASTRKGKQV--LNV 639

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           S+ +E    V      + D +  V D   L+   ++E+   +R  KGV++      
Sbjct: 640 SEPDEARVCVPA----EGDYVATVGDNRKLLVFKIDEVNEMTRG-KGVILQRFKDG 690


>gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
 gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
          Length = 739

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 376/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+G+ D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL++LG+ T D++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EV+ G +A+I NP    + L E I GPD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVIKGTIALIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD      
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELAAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVVRAEAVQIKEQDLMPAEAVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +        +  R  D      +  T+  + F    G  Y   +  
Sbjct: 512 GWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + L+   G  ++ I  + EDE S     ++ A+  G   + +    
Sbjct: 564 LP--SARGLGEPLSSKLAPASG--VSFIQVYLEDEESE----LIAASTSGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLDAKEQILSMTTLNLDE 693


>gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5]
 gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5]
          Length = 737

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 244/768 (31%), Positives = 392/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ + LR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YD +  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  +++ +M  I+GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AI   RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMERFKLTEIQVEAIFNTRLRSLRKLEEQEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  ++K+E+ +V+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKVVKKEIRTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G  +  G+++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKG--KGTGESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ +   ++GK  M +     +         + I    +  + + F I  I     +  
Sbjct: 616 SNEVMAQTKTGKQIMNVPDG-HVCIACLPVNGDSIACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKNIVAFLGKRG 719


>gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
 gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
          Length = 760

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 228/742 (30%), Positives = 392/742 (52%), Gaps = 63/742 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
                ++   +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K A
Sbjct: 6   TERTPLSKFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAKYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE +
Sbjct: 66  RTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPDDPKSFAAMRYTEAK 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ TVD+ PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN
Sbjct: 126 LSHFSEVLLSELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
             EV + C  +ID P  DLD +ME ++GPD+PT A +I  +  +K  Y +GRG+I +R  
Sbjct: 186 AREVANACALLIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTIKMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VV 311
            H+E+      +IV+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +     VV
Sbjct: 246 YHLEE-----NEIVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENPTRLVV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           +        + ++  L+  T L+  + VN+  L    +P+   L+GIL  ++ FR++ V 
Sbjct: 301 VPRSNRVDTEQLMKHLFATTDLEKQYRVNLNILGLDGRPQVKPLVGILGEWLEFRKQTVT 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K   R H+L GL IA  N+DEV+ IIR+   P   ++EL++R          
Sbjct: 361 RRLQYRLDKVEARLHILQGLLIAFLNIDEVIEIIRYEDEP---KKELIKR---------- 407

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AILEL+L  L  L    ++ E   L  E ++   +
Sbjct: 408 ----------------FALTDTQAEAILELKLRHLARLEEMKLKGEQEELEKEREKLSQL 451

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L+S  RL  +IK+E+L+  ++    RR+ +VE      + + +    E + V +S  G+V
Sbjct: 452 LNSDRRLKTLIKKEILADAEKYGDERRSPLVERAEAKALSETELTPAEAVTVVLSAKGWV 511

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  +        +  +  D         ++  V+F  + G  Y  +   LP 
Sbjct: 512 --------RCAKGHDVDGEKLSYKSGDSFQAAAQGKSNLPVVFLDTSGRSYSCEAHSLP- 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S +++G+ L    ++  GE +   +   +++      Y + ++  G     +  D +  
Sbjct: 563 -SARSQGEPLTGRFNMVAGEMVQHALMARDEQ------YYLLSSDAGYGFVCQFKDLVSR 615

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N++GK  + L +  +++         +  +++ +  G+ + FPI+ +   A      +  
Sbjct: 616 NKNGKAILTLPTGAKVMPPVEVKDTAQAQVIVVSNEGRMLVFPIADLPQLAKGKGNKMIS 675

Query: 727 ISL----AKGDQVISMAIVLHA 744
           I      ++ + V+++++    
Sbjct: 676 IPTLRAQSREEYVVAVSVASPE 697


>gi|188524342|ref|ZP_03004374.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273817|ref|ZP_03206351.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660114|gb|EDX53494.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249572|gb|EDY74354.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 852

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 385/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYACNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706


>gi|298498650|ref|ZP_07008457.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
 gi|297542983|gb|EFH79033.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
          Length = 595

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/624 (34%), Positives = 333/624 (53%), Gaps = 90/624 (14%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R E
Sbjct: 1   MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 60

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++
Sbjct: 61  VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 120

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +++     +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   
Sbjct: 121 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 180

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+V
Sbjct: 181 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 240

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y
Sbjct: 241 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 300

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++
Sbjct: 301 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKK 357

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF--- 716
             L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S        
Sbjct: 358 TSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDE 417

Query: 717 ---------------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
                                 GR + GVRG+ LA GDQV+S+                 
Sbjct: 418 NGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI---------------- 461

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                +   E  +LTV+E G+GKRTS  
Sbjct: 462 -------------------------------------VPKTEGDVLTVTENGYGKRTSLS 484

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R
Sbjct: 485 EYPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGR 542

Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899
            T+GV +  T++ E VV ++RI E
Sbjct: 543 NTQGVTLIRTSEGESVVGLQRIDE 566



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 163 LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 220

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 221 ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 276

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 277 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 334

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 335 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 392

Query: 588 SVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI---------------LSLN 625
            ++ FS  G V + K       V           G+  I                 + L 
Sbjct: 393 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 452

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 453 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 506

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 507 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 565

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 566 EIEESELPEGEEALVENDAPVAQDDDGEQ 594


>gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 785

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 245/780 (31%), Positives = 375/780 (48%), Gaps = 88/780 (11%)

Query: 1   MTEHIIS--SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++  IS  S    ++G  ++ + D  Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+
Sbjct: 1   MSDPSISDFSTAGNDEG-ETLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILY 59

Query: 59  GMMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
            M +MG+ +         K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  LI
Sbjct: 60  AMGRMGLGYGGAAGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLI 119

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS DGD  AA RYTE RL + A  LLD++ + TVDF PNYDGS +EP  L AR 
Sbjct: 120 DGQGNFGSRDGDSAAAMRYTEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARL 179

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           P  L+NG  GIAVG+AT IP+HNLGE+   C+A+I  P +  + L+ ++ GPD+P G  I
Sbjct: 180 PFALLNGASGIAVGLATEIPSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQI 239

Query: 232 LGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           +     I  AY TGRGS+ +R    IE+ +  + Q+VV E+P  V+   +LE+I EL   
Sbjct: 240 ISSAAEIAGAYQTGRGSLKLRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNP 299

Query: 291 KRIVDIADLRDESD-------------------RQGYRVVIELKRGASA-DVILNQLYRY 330
           K  V    L  E                         R+V E K G +    ++  L  +
Sbjct: 300 KIKVGKKALSQEQTQLKASLLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAH 359

Query: 331 TSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           TSL++   +N+  +    +P + +L  +L+ ++AFR+  + RR+++ LNK  +R H+L G
Sbjct: 360 TSLETSAPINLTLVGLDGRPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEG 419

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
             I + +LDEV+ IIR +  P+ A   LM R W+                         L
Sbjct: 420 RQIVLLHLDEVIAIIRQADEPKAA---LMAR-WS-------------------------L 450

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           S+ Q   ILE+RL +L  L    I  EL  L     +  DIL+    L   + +E+ +  
Sbjct: 451 SDRQAEDILEIRLRQLARLEALRIGQELKELRDRQGKLEDILNHPGALRRTLIKEIETDA 510

Query: 510 DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
                PRRT I      + +   +  E + V VS  G+V        R +   G   +  
Sbjct: 511 KTFADPRRTLIQAEKKAVIE-VRVPDEPVTVVVSQKGWV--------RVRSGHGHEAASF 561

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             +  D +   F   T  ++L F + G VY   V  LP    +  G+ +  ++ L  G +
Sbjct: 562 AFKAGDGLYGTFECRTVDTLLAFGNNGRVYSVAVSLLPGA--RGDGQPVTTLIELEAGTQ 619

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-- 687
           +      P          ++ +   G      +   I   + GK  + L   +       
Sbjct: 620 VLHYFAGPA------QATLLLSNSGGYGFLATVEHMISRQKGGKTFLTLAGGETPCPPSH 673

Query: 688 -------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                          +   +  G+ + F +  ++  A     G+  I L   D++   A 
Sbjct: 674 AFGSTGSAPVLPATHVACASTGGRILTFELGELKTMA-NGGRGLLLIDLEDKDRLAGAAA 732


>gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814]
 gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814]
          Length = 750

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 243/734 (33%), Positives = 379/734 (51%), Gaps = 59/734 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   + D  ++ GI    ++D +   YL YA++ I  RA+PD+RDGLKPVHRR+++ M
Sbjct: 1   MSDEFKTDD--QDNGIIEEPMSDALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +     + K AR+ G+V+GKYHPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 59  RLLKLNPELAFKKSARVVGDVIGKYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  LL+ L ++ VDF+  YDG  +EPVVL + +PN+L NG  
Sbjct: 119 DGDSAAAMRYTESRLTPAAQLLLEGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E +D C+ +I+N       L++I+ GPDFPTG  I+     I  
Sbjct: 179 GIAVGMATSIPPHNAAETIDACIHLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSILK 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       QIVVTEIPYQV K+ ++E++AEL+  K+   + D+
Sbjct: 239 AYETGRGGFRMRCKWEKEDLPRGLWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            DES      V++   +    DV++  LY+ + L+S FS+NM  L+   P    L  +L+
Sbjct: 299 MDESAEDIRVVLVPRNKLVDPDVLMASLYKMSDLESRFSLNMNVLDHNVPRVMGLKQVLQ 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++A R+EV+VRR ++ L+K   R H+L G   A  N+DEV+RIIR+  +P   + ELM+
Sbjct: 359 CYLAHRQEVIVRRAQHRLDKIEARLHILEGYLKAYLNIDEVIRIIRYEDHP---KEELMK 415

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT AIL +RL  L  L   +I+ E + 
Sbjct: 416 --------------------------AFKLSEIQTDAILNMRLRALRKLEEIEIQGEHDK 449

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI---VEGLLDMEDED 531
           L  E  + + ++ S +R    +K++L   ++  D       RR++    VE   D   E 
Sbjct: 450 LTQERDKLVQLIGSEARQWTEVKRQLKIAREVFDPESDLGRRRSKFGVAVEIDADAALEA 509

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E + V +S +G++        RA +   +    +  +D D +       T   V+ 
Sbjct: 510 MIPKEPITVILSKMGWI--------RALKGHNQAMDKLKFKDGDELAFTLECQTTDKVVL 561

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +S G  +     +LP G  +  G+ +   + L + E I   +      +       V A
Sbjct: 562 LASGGKAFTFAADKLPSG--RGHGEPIRLSIDLPEDEEIIATI------TPKTGYRRVVA 613

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G        + +   R GK+                 + + + +     + + FP+ 
Sbjct: 614 STAGYGFVVNEEELVSQKRGGKVIQNPPDGATFAFCPRV-EGDMVAVIGDNKKILFFPLE 672

Query: 712 AIRVFAGRNSVGVR 725
            +   A     GV+
Sbjct: 673 ELPEMA--RGKGVK 684



 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 30/229 (13%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             SD  +      +A+++D+   + +     +E   ++ +K+G  +R      +      
Sbjct: 484 PESDLGRRRSKFGVAVEIDADAALEA--MIPKEPITVILSKMGW-IRALKGHNQAMDK-- 538

Query: 721 SVGVRGISLAKGDQVISMAIVLHAD-----ADYDERICYMKHMSAQRRLISGDTEEITSL 775
                 +    GD++         D     A   +   +        R           L
Sbjct: 539 ------LKFKDGDELAFTLECQTTDKVVLLASGGKAFTFAADKLPSGRGHGEPIRLSIDL 592

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             D  +   I+              +  S  G+G   +  +     R GK I+       
Sbjct: 593 PEDEEIIATIT-------PKTGYRRVVASTAGYGFVVNEEELVSQKRGGKVIQN------ 639

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              GA  A  P  + D + ++ D   ++  P+ E+   +R  KGV + +
Sbjct: 640 PPDGATFAFCPRVEGDMVAVIGDNKKILFFPLEELPEMARG-KGVKLQN 687


>gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
 gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
          Length = 739

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 370/740 (50%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  +E     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYSVE-----KHEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   ++   +       G +
Sbjct: 616 DTTAKAGKTFLTVPEKSKALPLISAQNMTHLAVLSSAGRLLILDLAE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEAKEQILSMTTLNLDE 693


>gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
 gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
          Length = 769

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/773 (30%), Positives = 368/773 (47%), Gaps = 79/773 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EH+       E     + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MNEHVSVPSPVGED---YLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 58  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 118 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 178 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 238 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 297

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 298 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 357

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 358 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+T                                    L+E+Q   IL
Sbjct: 418 EVIKVIRESDDPKT-----------------------------DLMAAFGLTEIQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 449 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 509 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 560 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 613

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
             +     + + +   G     KL D +   ++GK+ M +DS + +L             
Sbjct: 614 --TGQPEQHYLLSGSGGYGFITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +  I+L +   + + F I  ++V       G++ +SL +G  +  + +   A+
Sbjct: 672 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTEGASLEHVLVTTAAE 722


>gi|188024071|ref|ZP_02996816.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867813|ref|ZP_03079813.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551406|ref|ZP_03772352.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188019110|gb|EDU57150.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195660510|gb|EDX53767.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225379221|gb|EEH01586.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 385/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706



 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 462 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 522 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 573

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 574 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 750

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 250/806 (31%), Positives = 400/806 (49%), Gaps = 65/806 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      +    G+   S+ D  +++YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDTT----QMSMDGVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  +LD+LG+ TVDF PN+DG+ QEP+ L AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   C+ +ID P   L+ L+E ++ PD+PT A I+     + 
Sbjct: 177 SGIAVGMATDVPPHNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADLH 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y+TGRGSI +R V ++E        +V+T +P+QV+ A +LE+IA  ++ K++  + D
Sbjct: 237 KVYSTGRGSIRMRAVYNVEDGD-----VVITGLPHQVSGAKVLEQIAAQMQAKKLPMVTD 291

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    ++ + R    D   +++ L+  T L+S + VNM  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDGRPQVKDLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ +R   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P  A  
Sbjct: 352 TMLSEWLQYRITTVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            LSE Q   ILE RL +L  L    IR 
Sbjct: 410 -LMAR--------------------------FELSEAQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E   L  E +     L S ++L G++++E+++  D     RR+ +VE      + + + +
Sbjct: 443 EQEELLRERETLAGYLGSETQLKGLVREEIMADADYYGDDRRSPLVERAEAKALSESELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G+V        RA +      S +  +  D         ++   +F  
Sbjct: 503 PSEPVTVVLSEKGWV--------RAGKGSDVDGSTLSYKAGDTFKTSASGRSNQFAVFID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  +      L   S + +G+ L   L+   G     ++  P+DE+       V A+ 
Sbjct: 555 STGRSFSLAAHTL--ASARTQGEPLSGKLTGQPGASYEWVV-MPDDEA-----LYVLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G     K  D    N++GK  + L    ++L     +   E  I+  T  G+ + F  S
Sbjct: 607 AGYGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADEQWIVALTSEGRLLMFKAS 666

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +         G + IS+          ++       + +   +        L  GD E 
Sbjct: 667 ELPQLG--KGKGNKIISVPSDKAQAREELMTQLLVLDEGKSVVITSGKRTMTLKPGDLES 724

Query: 772 ITSLKNDSSVEGNISEERCQELKLKE 797
             S++           ++ +E+ + E
Sbjct: 725 YKSMRGKRGSMLPRGYQKVEEIAVGE 750



 Score = 42.2 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +   E   +  S+ G+G      D +  N++GK +   ++S+ ++   ++   PV++ D
Sbjct: 593 VMPDDEALYVLASDAGYGFLVKGEDLQAKNKNGKAL--INLSENSK---VLMPLPVSNAD 647

Query: 852 Q--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  I+ ++ +G L+    +E+    +  KG  I S   D
Sbjct: 648 EQWIVALTSEGRLLMFKASELPQLGKG-KGNKIISVPSD 685


>gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-12]
          Length = 742

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 236/730 (32%), Positives = 373/730 (51%), Gaps = 56/730 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    
Sbjct: 11  ETAGHIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASG 70

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+V+GK+HPHG+A++Y+AL R+AQD++ R  L+EGQGNFGSVDGD PAA RY
Sbjct: 71  FKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRY 130

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD +  D VDFRP YDG  QEPVVL + +PN+L NG  GIAVGMAT+I
Sbjct: 131 TEARLTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSI 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIV 249
           P HN  EV      ++  P      L+E++ GPDFPTG +I+     I  AY TGRGS  
Sbjct: 191 PPHNAAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFR 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +E+       IVVT+IPYQV K+ ++E+IA+L+ +K++  + D+RDES  +   
Sbjct: 251 MRARWEVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRL 310

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEV 368
           V+    RG   +V++  L+R T L+S F +NM  L   +      L  +++A++  R EV
Sbjct: 311 VLEPKTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLDHRHEV 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+++ L     R  +L G      NLD+V+RIIR   +   A+  L+          
Sbjct: 371 LERRSRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREEDD---AKASLIA--------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  L+++Q  ++L +RL  L  L   +IR E ++L  E    +
Sbjct: 419 -----------------TFKLTDLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEKAALM 461

Query: 489 DILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLL--DMEDEDCIVREDMVVTV 542
            +L S  +    I++EL  +           RR+ I+      D+   + + RE + + +
Sbjct: 462 ALLDSEKQRWKTIERELTGMIKAFGKGRLGERRSTILSAPKPVDISVVEEVEREPLTMIL 521

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        RA +           ++ D +       T   + FF++ G  Y  K
Sbjct: 522 SQKGWV--------RAVKGHNVDLENQKFKEGDALKLAIPCQTTDRLCFFATDGRAYTVK 573

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP G  +  G+ +  ++ L+  E +  + P  + +        + A+  G     + 
Sbjct: 574 GADLPRG--RGDGQPIRLLIDLSNDEDLLAVFPIEDGKRR------LVASSAGRGMLVEE 625

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              +   RSG+  + L    E   V    + + + +     + + FP+  + V A    +
Sbjct: 626 EALVAEKRSGRQVLNLKEG-EFARVCVPAEGDHVAVVGDNRRFLIFPLEQLPVMA--RGL 682

Query: 723 GVRGISLAKG 732
           GV     + G
Sbjct: 683 GVALQKYSDG 692


>gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1]
 gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1]
          Length = 750

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/744 (32%), Positives = 378/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++          + V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKEVLPPGN--GDSASPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + + KCARI G+VMGK+HPHG+ +IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLRLNPEQGFAKCARIVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL  + +D VDFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT++P HN  EV D  +A+ID+PD+ +  L++ ++GPDFPTG +I+ GR  I+ 
Sbjct: 179 GIAVGMATSVPPHNAAEVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R   H E        +VVTEIPY V K+ ++EKIAEL+  +++  + D+
Sbjct: 239 AYETGRGGFRLRARWHKEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLEDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R    ++++  L+R T L++ F +NM  L  G  P   +L  +L
Sbjct: 299 RDESAEDIRVVLVPKSRAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R EV+VRR+++ L +   R  +L G  +A  N+DEV+ IIR    P+       
Sbjct: 359 REWLDHRREVLVRRSQHRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEPKPV----- 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 414 ------------------------MMERFNLTDNQAEAILNMRLRALRKLEEFEIRTEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-------RRTRIVEG-LLDMED- 529
            L  E  +   +L+S ++    ++ E+  V+   D         RRT   +    D+ED 
Sbjct: 450 KLSEEKTQIEALLASEAKQWKTVRWEVAKVRQTFDPEKNPALGRRRTTFGDAPSHDLEDV 509

Query: 530 -EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            +  I RE + V +S  G++        RA +      S VV ++ D +   F   T   
Sbjct: 510 QQAMIEREPITVILSEKGWL--------RAMKGHLTDLSTVVFKEGDSLKLSFHAQTTDK 561

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F++ G  Y     RLP G  +  G+ +  ++ +   + + T               +
Sbjct: 562 ILLFTTGGKFYTIGGDRLPGG--RGHGEPVRIMVDMENDQAVVTAFA------HDPERRL 613

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN       + +   R GK  M + + DE   +      +   +  +  + + F
Sbjct: 614 LIASYAGNGFIVPEKEVVANTRKGKQIMNVKTPDE-ARLCIPVSGDHAAIVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +         GVR      G
Sbjct: 673 PLEQVPEMV--RGKGVRLQRYKDG 694


>gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU]
 gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 739

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 227/740 (30%), Positives = 368/740 (49%), Gaps = 59/740 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP      L E I  PD PT A +I     +     TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 246 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 361 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 407 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  +I  EL     +    RR+ IV     + ++++D +  E + V +S  
Sbjct: 452 REQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  R  D      +  T+  V F    G  Y   +  
Sbjct: 512 GWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISN 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  L + LS   G     +    +DES      ++ A+  G   + +    
Sbjct: 564 LP--SARGLGDPLSSKLSPASGVSFIQVY-LDDDESE-----LIAASSAGYGFKTQTKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + +  + + L + +      + + +  G+ +   +    +       G +
Sbjct: 616 DTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVE--LPNLNKGKGNK 673

Query: 726 GISLAKGDQVISMAIVLHAD 745
            I L   +Q++SM  +   +
Sbjct: 674 LIQLEGKEQILSMTTLNLDE 693


>gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda]
          Length = 701

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/725 (32%), Positives = 371/725 (51%), Gaps = 61/725 (8%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG +A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVD 152
           Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL + A  LL +LG+ TVD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSRYAEILLSELGQGTVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN  EV    VA++DNP   
Sbjct: 121 YVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQSS 180

Query: 213 LDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           LD L+  I+GPDFPT A +I  R  I+  Y TGRGS+ +R V   E++     +IV++ +
Sbjct: 181 LDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEES-----EIVISAL 235

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--ILNQLYR 329
           P+Q + A +LE+IA  +R +    + DLRDESD +    ++ + R    D+  ++N L+ 
Sbjct: 236 PHQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFA 295

Query: 330 YTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            T L+  + +NM  +    +P    L  IL  ++++R E V RR  Y L K   R H+L 
Sbjct: 296 TTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHILE 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL  A  N+DEV+ IIR    P+     L+ R                            
Sbjct: 356 GLLCAFLNIDEVIHIIRSEDEPKPV---LVAR--------------------------FG 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LS+ Q  AILEL+L  L  L    IR E ++L  E      +L+S  +L  +IK+E+++ 
Sbjct: 387 LSDTQAEAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKEEIMAD 446

Query: 509 KDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            +     RR+ + E      M + D +  E + + +S  G+V        R+ +      
Sbjct: 447 AETYGDARRSPLQERSEARAMSEHDFVPSEPVTIVLSEGGWV--------RSAKGHDIDP 498

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
           SG+  +  D         ++  V+F  S G  Y      LP  S + +G+ L   L+   
Sbjct: 499 SGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLP--SARGQGEPLTGKLTPPP 556

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           G  I  ++   +++       ++ A+  G       SD +  NR+GK  + L    ++L+
Sbjct: 557 GATIEHVLMAADNQK------LLMASDAGYGFVCTFSDLVACNRAGKAMLTLPENAKVLT 610

Query: 687 VETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVL 742
                 ++D+LL  T+ G+ + FP+  +   +      +  I     A G+  +   +VL
Sbjct: 611 PLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVL 670

Query: 743 HADAD 747
                
Sbjct: 671 APQTS 675



 Score = 44.5 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR+GK +     +       L  +    D+D 
Sbjct: 565 MAADNQKLLMASDAGYGFVCTFSDLVACNRAGKAMLTLPENAK----VLTPLEINGDDDM 620

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ +++ G ++  PV+++   S+           K  ++VS+
Sbjct: 621 LLAITEAGRMLMFPVHDLPQLSK----------GKGNKIVSI 652


>gi|171920938|ref|ZP_02932082.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188024134|ref|ZP_02996867.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554590|ref|YP_002284910.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903170|gb|EDT49459.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188019193|gb|EDU57233.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209542091|gb|ACI60320.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 852

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 385/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706



 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 462 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 522 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 573

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 574 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
          Length = 754

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 246/785 (31%), Positives = 384/785 (48%), Gaps = 62/785 (7%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +    + +     + I    + + +   YL YA++ I  RA+PD+RDGLKPVHRRIL+
Sbjct: 1   MAKRPTKTPDRPAGPETIIEEPMGEALSRRYLAYALSTITARALPDIRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M QM +     Y K A+++G+VMG YHPHG+ AIYDA+ R+ QD+S+R+ LI+GQGNFG
Sbjct: 61  AMRQMRLGSGGSYRKSAKVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD  AA RYTECRL +AA  LL+ +  DTVDFR  YDG  +EPVVL A +P++L NG
Sbjct: 121 NIDGDNAAAMRYTECRLTEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGI 237
             GIAVGMATNIP HN+ E++D C+ +I  P+   + L+  ++GPD PTG V I  +  +
Sbjct: 181 SSGIAVGMATNIPPHNVAELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDL 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AYATGRG   IR     E     R QIVVTEIPYQV K+ ++E+IA+L++ K++  + 
Sbjct: 241 AEAYATGRGGFRIRARWETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLT 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           D+RDES      V+         + ++  +++ T L++  S+N+  +     P  F L  
Sbjct: 301 DVRDESAEDIRLVLEPKAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADGAPGVFGLRD 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L+AF+  R +V++R T+Y L+K   R  +L G  IA  NLDEV+RIIR+  +P+     
Sbjct: 361 CLQAFLDHRRDVLLRGTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKA---- 416

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                        T  LSE+QT AIL +RL  L  L   +++ E
Sbjct: 417 -------------------------ELMATFDLSEIQTEAILNMRLRSLRKLEEMELKRE 451

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGL--LDMED 529
              L  E K+   +L S       I  +L   +   D       RRT + +     +++ 
Sbjct: 452 HKDLKAEQKDLQALLKSEDIQWERIAGQLKETRKSFDPRSDLGRRRTALSDAPITEEVDL 511

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ++ I +E + V +S  G+V        RA +   + ++ +  +D D    +    T   V
Sbjct: 512 DELIEKEPVTVVISEKGWV--------RALKGHVEDKASIKYKDGDQGRFVLPAMTTDKV 563

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +  S+ G  +   V  LP G  +  G+    ++ L     +  +  +  D        ++
Sbjct: 564 ILVSTNGRFFALDVKDLPGG--RGHGEPFRLMVDLTNEHDLIDVFLYQGD------RTLL 615

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQC 705
            A+  G+       D +   R GK  + + +  E       T      + +       + 
Sbjct: 616 LASSAGHGLFVPEEDVLATTRKGKQVLNVAAGAEAQVCRLLTAAPGPNDYLATIGSNRKL 675

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + FP   + V       GV    +  G  V +          + +R    +     +  +
Sbjct: 676 LIFPAGDVPVMV--KGKGVVLQKITNGTLVDAKCFSPEEGLTWTDRAGRQQSAEEWKEWV 733

Query: 766 SGDTE 770
               +
Sbjct: 734 GKRAQ 738


>gi|237732925|ref|ZP_04563406.1| DNA topoisomerase IV subunit A [Mollicutes bacterium D7]
 gi|229383994|gb|EEO34085.1| DNA topoisomerase IV subunit A [Coprobacillus sp. D7]
          Length = 614

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/647 (36%), Positives = 369/647 (57%), Gaps = 37/647 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG+ ++YDA+ R++QDW +R+ L++ QGN GS+D DP AA RYTE RL   
Sbjct: 61  GNVIGNYHPHGDISVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  I  P+  L+ LME I+GPDFPTGA++ G+ GI NA+ +GRG +++R  S + +
Sbjct: 181 IDATIHRIKYPNCSLEKLMEFIKGPDFPTGAIVEGKQGILNAFKSGRGKVIVRSTSEMIE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                 +IV+TEIPY+VNKA ++ KI E+   + I  I ++RDESDR G R+VI+LK+  
Sbjct: 241 EKT-MNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLKKDI 299

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +    LN LY+ T LQ  ++ NMVA+   +P    +I IL  ++A + +VV R + + LN
Sbjct: 300 NVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRSSIHDLN 359

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEVV+ IR S +   A+  L+++                  
Sbjct: 360 KANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEK------------------ 401

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE Q  AI+ L+L RLT      + NE   L   I    +IL+S   L 
Sbjct: 402 --------YGFSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLR 453

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +I  +L  +K +   PR ++I + + +  ++++  I+ ED+ V+++  GY+KR+     
Sbjct: 454 KVIIDQLKGIKKKYPMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRISNRSI 513

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +A      G+     ++ D++  ++  +T   +L F+  G      V ++     +  GK
Sbjct: 514 KASEGIPFGK-----KENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGK 568

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +  ++ LN GE+I   +   +       LYV+ ATK  + + ++  
Sbjct: 569 HVSYLVKLNAGEKIIGTILVKDFNL---PLYVMLATKKWSNQTDEFK 612


>gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 768

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/799 (29%), Positives = 373/799 (46%), Gaps = 79/799 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EH+       E     + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MNEHVSVPSPVGED---YLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 58  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 118 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 178 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 238 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQL 297

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 298 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 357

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 358 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 418 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 449 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 509 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 560 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 613

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
             +     + + +   G     KL+D +   ++GK+ M +DS + +L             
Sbjct: 614 --TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SL  G  +  + +   A+   +   
Sbjct: 672 DCKVVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTDGASLEHVLVTTSAEFIVETVG 729

Query: 753 CYMKHMSAQRRLISGDTEE 771
                   + R+   D + 
Sbjct: 730 KRGAAHQEKLRICDIDGKR 748


>gi|313609056|gb|EFR84776.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL F2-208]
          Length = 586

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 238/612 (38%), Positives = 367/612 (59%), Gaps = 33/612 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTN----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
              + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A          + M++ D    +  +++  S+L F+S G      V  LP  
Sbjct: 518 RTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINI 621
             +  G  + ++
Sbjct: 573 RWKNLGDHVSHL 584


>gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
 gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 240/743 (32%), Positives = 369/743 (49%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL+  ++GPDFPTG  VI  +  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWMQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+    R     +++  L+R T L+S   +N  V + G  P+   L   L
Sbjct: 298 RDESAEDVRVVIEPKSRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+       
Sbjct: 358 REWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPV----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++VQ  AIL +RL  L  L   +IR E  
Sbjct: 413 ------------------------LMKAFNLTDVQAEAILNMRLRSLRKLEEFEIRTEDK 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDE 530
           +L  E+K    IL S +     + +++  V++          RRT+  +         +E
Sbjct: 449 NLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIEE 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+V        R  +      SG+  + +D +   F   T + +L
Sbjct: 509 AFVEREPVTVVISDKGWV--------RTLKGHVADLSGLNFKQDDKLDRAFFAETTSKLL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y  +V +LP G  +  G+ +   + + Q   I  +               + 
Sbjct: 561 LLATNGRFYSLEVAKLPGG--RGHGEPIRMFIDMEQDAAIVAMFVHK------GGRKFLI 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFP 709
           A+  G        D +   R GK  + ++  +E  ++       +++ +     + + FP
Sbjct: 613 ASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALTVVGDGSDNVAVIGDNRKMLIFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +   A     GVR      G
Sbjct: 673 LDQVPEMA--RGRGVRLQKYKDG 693


>gi|225550780|ref|ZP_03771729.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379934|gb|EEH02296.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 852

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 386/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L+  L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706



 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 462 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 522 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 573

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 574 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
 gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
          Length = 777

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 271/758 (35%), Positives = 405/758 (53%), Gaps = 76/758 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74
             ++ + +  +  YL YA++VI  RA+PD+RDGLKPV RRILF M   + +  +K++ K 
Sbjct: 4   TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GE MGKYHPHG+ AIYDA+ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE +
Sbjct: 64  ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           LQ  A  +L+ L  +TVD+R N+DGS +EPVVL AR PN+LVNG  GIAVGMATNIP HN
Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRG 252
           LGEVVD  + +I+ P++D   L+ + I+GPDFPTG  IL     +   Y TG G+I +RG
Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                  +  + + ++  +PY V+K+ ++E+IA+ + E+ +  ++++RDES     R+V+
Sbjct: 244 AYR----TKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDD-VRIVL 298

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFRE 366
           ELKRG+  +  +  L+++T LQ  F VN+  L      +   P++  L  IL+ F+ FR 
Sbjct: 299 ELKRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RR +  L +   R H+L G       LDE + IIR S N   A + LM R      
Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E QT AILE +L +L+ +  + IR+EL       + 
Sbjct: 413 --------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEKRARAEG 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSH 544
              +L       GI+K EL  ++DE    RR+ +V    DME  +ED IV ED+ V V+ 
Sbjct: 453 IRRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPGADMEYTEEDYIVDEDVHVIVTR 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKR                  +  RD D V      ST  +V FF++ G  Y  ++ 
Sbjct: 513 DGWVKRQ---------GTYSDLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTTRIT 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE---------------------DESSW 643
            +P       G  +  + S + GE +  ++ F +                     D  + 
Sbjct: 564 EIPST--TGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDAP 621

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           +  YVV  +K G   R  L  +++ +  +G+  M+L+  DE+  V     + +I L +  
Sbjct: 622 DQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENICLASHD 681

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           G+ + FP+  + V+ G  + GVR I L   D+V+  A+
Sbjct: 682 GRALVFPVHQVSVYKGP-AKGVRAIRLEDNDRVLDFAL 718



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 83/264 (31%), Gaps = 41/264 (15%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M + E++   +    V  T+ G V+R       Q   S   A++    DE+      +  
Sbjct: 493 MEYTEEDYIVDEDVHVIVTRDGWVKR-------QGTYSDLDAIRTRDGDEVGWALAGSTR 545

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   T  G C    I+ I    G      +  S   G+ V+ +               
Sbjct: 546 ATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGV--------------- 590

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                      +S D   +         E     +        + +++ +S+ G   R +
Sbjct: 591 -----------VSFDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFT 639

Query: 814 SYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
              +     +   K +R  D  +      +  V     ++ I L S  G  +  PV+++ 
Sbjct: 640 LDGYLEPSISTGRKYMRLEDGDE------VARVHLARGDENICLASHDGRALVFPVHQVS 693

Query: 872 IASRATKGVVIFSTAKDERVVSVE 895
           +     KGV       ++RV+   
Sbjct: 694 VYKGPAKGVRAIRLEDNDRVLDFA 717


>gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c]
 gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c]
          Length = 749

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 371/759 (48%), Gaps = 71/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S      G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRPS----FHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A +I   + ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +  
Sbjct: 237 NLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDG 291

Query: 299 L--RDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
              RDESD +    ++   R      + ++  L+  T L+    VN+  +    +P+   
Sbjct: 292 EGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKP 351

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  +++FR + V  R KY L K   R H+L GL IA  NLD+V+ IIR    P+  
Sbjct: 352 LKQLLSEWLSFRSDTVTHRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPV 411

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ R                            LS+ QT  IL+ +L +L  L    I
Sbjct: 412 ---LIAR--------------------------FGLSDAQTEYILDTKLRQLARLEEMAI 442

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           RNE ++L  E  E   IL S  +L  +IK ELL+        RR  +V  +    +++ +
Sbjct: 443 RNEQDALTKERDEINVILDSDIQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESE 502

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E M V +S  G++        RA +      SG+  R+ D +       +   V F
Sbjct: 503 LVASEPMTVVLSEKGWI--------RAAKGHEVDPSGMSYREGDRLLAAVRTRSTHQVSF 554

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y   V  LP  S +  G+ L    S   G     +       S+ N+   V A
Sbjct: 555 LDSEGRAYSTLVHTLP--SARGNGEPLTGRFSPAPGASFQAM------ASADNDKLFVLA 606

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFP 709
           + HG     +  +    N++GK  + L    +++ +   T    + I+  T  G  +   
Sbjct: 607 SSHGYGFITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLTDVRHDRIVAVTSAGNLLAIA 666

Query: 710 ISAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHA 744
            S +         G + I + K     ++++++  V  +
Sbjct: 667 ASELPELD--KGKGNKLIDIPKTKLATERLVAVIAVASS 703


>gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
 gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
          Length = 784

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 252/776 (32%), Positives = 372/776 (47%), Gaps = 89/776 (11%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + +    E  ++     S+    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +
Sbjct: 7   DAVAPIPEPADQD----SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMAR 62

Query: 63  MGV-------EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           MG+           K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+S R  L++GQG
Sbjct: 63  MGLGFGGANGASGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQG 122

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS DGD  AA RYTE RL +    LLD+L + TVDF PNYDGSF+EP  L AR P  L
Sbjct: 123 NFGSRDGDGAAAMRYTEARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTL 182

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVG+AT IP+HNL EV D CVA+I  P +  + L  +I GPD+P G  I+  T
Sbjct: 183 LNGASGIAVGLATEIPSHNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISST 242

Query: 236 -GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I  AY+TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I EL   K   
Sbjct: 243 AEIAAAYSTGRGSLKVRARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKA 302

Query: 295 DIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQ 334
               L  E                   S     R+V E K        ++N L  +TSL+
Sbjct: 303 GKKALSQEQVQLKQTVLSVLDVVRDESSKDAAVRLVFEPKTSRIGQSELINTLLAHTSLE 362

Query: 335 SLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S  S+N+  +    KP + TL  +L  ++ FR+  V RR+++ L+K  DR H+L G  + 
Sbjct: 363 SSASINLTMVGLDGKPTQKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLV 422

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + N+DEV+ IIR S  P+ A   L+ R                            LSE Q
Sbjct: 423 LLNIDEVIAIIRQSDEPKAA---LIAR--------------------------FSLSERQ 453

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              ILE+RL +L  L    I  EL +L  E  +  +IL S + L  ++ +E+ +   +  
Sbjct: 454 AEDILEIRLRQLARLEAIKIEQELKTLREEQGKLEEILGSPAALRRLLVKEIEADAKQFA 513

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PRRT I      + +   +  E + V VS  G+V        RA+   G   +    + 
Sbjct: 514 DPRRTLIQAEKKAVLEVKVL-DEPVTVVVSAKGWV--------RARSGHGHDAASFAFKA 564

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +   F   T  ++L F S G +Y   V  LP    +  G+ L  ++ L  G ++   
Sbjct: 565 GDGLYATFECRTVDTLLAFGSRGRIYSVPVASLPGA--RGDGQPLTTLIDLESGTQLVHY 622

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-------- 685
              P       N  ++ +   G      + +     ++GK  +     + +         
Sbjct: 623 FAGPA------NATLLLSASGGYGFLATVENMTSRLKAGKAFISCAEGETVCRPSHVSGG 676

Query: 686 -SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                      +   +  G+ + F I+ +++ A     G+  + L   D +   A 
Sbjct: 677 TGATPLNPATHVACASTGGRILTFEIAELKLQAA-GGRGLMLLDLDAKDTLAGAAA 731


>gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis]
          Length = 470

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 257/495 (51%), Positives = 345/495 (69%), Gaps = 27/495 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT ++I  EMQ S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNQSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  L+ D+ KDT+DF+ NYDGS QEPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+ +N +ID+  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEILGRSGIRRAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     +++I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKTEIE-DHNGKQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN L++ T+LQS F +N++AL G +P+   L   L+ ++  +  V 
Sbjct: 302 IVIEVRRDANANVLLNNLHKQTALQSSFGINLLALVGGRPKVLNLKECLEEYLDHQIVVT 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q++AIL++RL RLTGL RD I  E N L   I E  +
Sbjct: 413 -----------------FELSYDQSQAILDMRLQRLTGLERDKIEGEYNELQQRIAELKE 455

Query: 490 ILSSRSRLLGIIKQE 504
           IL +  + L II++E
Sbjct: 456 ILENEYKGLEIIREE 470


>gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
 gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
          Length = 749

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/753 (31%), Positives = 380/753 (50%), Gaps = 66/753 (8%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +I+   E +E    ++S+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++
Sbjct: 3   NIVKPPESDE----TISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSEL 58

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D  
Sbjct: 59  GLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSPDDP 118

Query: 124 PP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
              AA RYTE RL   +  LL +LG+ TV++ PN+DG+  EP VL A+ PN+L+NG  GI
Sbjct: 119 KSFAAMRYTESRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNGTTGI 178

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAY 241
           AVGMAT+IP HNL EVV  C+ ++ NP   +  LME +  PD PT A +I     I+  Y
Sbjct: 179 AVGMATDIPPHNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDIQTMY 238

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+ +R +   E        IVVT +P+QV+ A +LE+IA  ++ K++  +ADLRD
Sbjct: 239 ETGRGSLRMRCIWGQEDGD-----IVVTSLPHQVSGAKILEQIAAQMQAKKLPMVADLRD 293

Query: 302 ESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +     V+I        + +++ L+  T L+  + +NM  +     P    L  IL
Sbjct: 294 ESDHENPTRLVIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGLPAVKPLNVIL 353

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             +++FR   V RR +Y L+K   R H+L G   A  N+DEV+ IIR    P   ++ LM
Sbjct: 354 TEWLSFRMVTVRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKP---KQVLM 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            ++++Q  AILEL+L ++  L    IR E +
Sbjct: 411 DR--------------------------FGVTDIQAEAILELKLRQIAKLEEIKIRGEQD 444

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVRE 536
            L  E +    IL+S ++L  ++K+EL ++ ++    RR+ IV       + + D +  +
Sbjct: 445 ELAKEGEWLEGILASATKLKNLVKKELQAIAEKYGNDRRSPIVVRGEAQALSEMDLLTSD 504

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S  G++        R+ +      + +  +  D         T+ + L   S G
Sbjct: 505 PITVVLSEKGWI--------RSAKGHDVDPAALSYKAGDAYMFSAKGKTNQNALLIDSTG 556

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      LP  S + +G+     L+   G   T ++   E         V+ A+  G 
Sbjct: 557 RSYALASHTLP--SSRGQGEPASGRLNPPSGAVFTGLLMGVE------KQRVLIASDAGY 608

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIR 714
               +L +    N++GK  + L     +L         +  +   +  G+ + FP+S + 
Sbjct: 609 GFVTELGNLYTKNKAGKALLTLPKGARVLPPFMIDDVADAYVAAASNEGRLLIFPLSDLP 668

Query: 715 VFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
             A         + G  +   ++ +    V+H+
Sbjct: 669 ELARGKGNKMLSIPGARVEAREEFVVSIAVIHS 701


>gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
 gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
          Length = 737

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 391/745 (52%), Gaps = 60/745 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EP+++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P+ +++ +M  I+GPDFPTG +I+ +   I  AY TGRGS  +
Sbjct: 182 PHNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E  S    QIVVTEIPYQV K+ ++E++A L+++K+I  ++++RDES      V
Sbjct: 242 RSRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    R     +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +V
Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YL+NK + R  +L GL IA  NLDE+++IIR    P+                  
Sbjct: 362 TRRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L   +I NE ++L  +     +
Sbjct: 406 -------------MMERFKLTEIQVEAILNTRLRSLRKLEEHEIINEHSNLQKQQAILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  I+K+E+ +V+ +         RRT   E  L    ++    + +E + + 
Sbjct: 453 ILNNPKELWKIVKKEIKAVQMQFGLNTVIGDRRTSFEEVTLTNQVVDITAFVTKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSNIKYKEGDAEKFILEAYTTDKILIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +P G  +  G+++  ++ +   + IT I+    D+       ++ A+  G      
Sbjct: 565 LADNIPKG--KGTGESIKLLVDIGNND-ITNILVHKPDQ------LLLLASSVGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ I   ++GK  M +      ++       + +    +  + + F +  I     +  
Sbjct: 616 SNEVIAQTKTGKQVMNVPDGHACIACLHVAG-DAVACIGESRKLLVFNVDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADA 746
            GV      K  +++ + I    D 
Sbjct: 673 QGVTLQKF-KNAKLLDIKIFNKEDG 696


>gi|238809641|dbj|BAH69431.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 857

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/825 (28%), Positives = 398/825 (48%), Gaps = 41/825 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++  +   +    I   ++   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M
Sbjct: 2   MNKNQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSM 61

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNK + K AR+ G+V+GKYHPHG+++IY+A+ RMAQDW +   L+E  GN GS+
Sbjct: 62  YELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSI 121

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL   A  ++ DL K+TV F PN+D S +EPVVL +  PN+L+NG  
Sbjct: 122 DDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAK 181

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A I NPDI L  L + ++GPDFPTG V+ G+ GI  A
Sbjct: 182 GIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGGVVYGQQGIYEA 241

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  GRG I +       +   ++  I + EIPY V K+ ++  I  ++ ++ +  + +++
Sbjct: 242 FERGRGRITLVSRYRTFEDKKNKF-IEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIK 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D+SDR G  ++I L + A+ +VILN L + T +Q  ++ N VA+    P+   L  +L  
Sbjct: 301 DQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTYNNVAIKNNSPQTLGLNDLLNC 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++    +V  +  ++ L K + R  +++G        DEV+ +IR S N +    +    
Sbjct: 361 YLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQ---- 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +  Q  AI ELRL +L+   ++    E   L
Sbjct: 417 ---------------------NLMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEEL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDM 538
             +IK    +L+ +      + + L  +K +   PRRT I E    +   + D +  E+ 
Sbjct: 456 EKQIKHVEMLLNDKEAFDQYLIETLQEIKKQFGRPRRTTITEEAFKVSYNEADLVKEEET 515

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + V+  GY+KR+   V  +            +++ D +      +T  ++L F++LG  
Sbjct: 516 YIGVTKHGYLKRMSNKVVNSN-----DFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNY 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               ++++     +  G  L + + L  GE +   +   +        YV   TK    +
Sbjct: 571 AMVPIYKIEESKWKDFGVHLSDFVELVSGEELVGAINVTDFNIQ---NYVCLFTKEAQGK 627

Query: 659 RNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R  L +F +        AMKL   DE++  +      D+LL TK G    +  + ++++ 
Sbjct: 628 RVVLKEFEVSRPNKTFTAMKLRKGDELVGAKLSNGYKDVLLITKRGMASLYTENDVQIYG 687

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
              S G +   +   D +++ A+V  H          Y+K +       SG       + 
Sbjct: 688 T-KSNGTKSCYMPPMDSIVAFAMVEAHETLAMLANETYVKRIHVSNITKSGKKNLGKPIF 746

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                +  I  +        + +I   +++         ++ I++
Sbjct: 747 AQLKTKPYIVTDAYPM--TVDDYIFVTNDENQVLLERIVEYPITS 789


>gi|185179130|ref|ZP_02964849.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184208968|gb|EDU06011.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 852

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 385/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706



 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 462 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 522 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 573

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 574 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 744

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 244/731 (33%), Positives = 377/731 (51%), Gaps = 56/731 (7%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+ E     I +  +++ +   YL YA++ I  RA+PD+RDGLKPV RRIL+GM  + ++
Sbjct: 4   STAEPPADRIINEPMSEALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGMRVLRLD 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
               Y KCA+I G+VMG YHPHG+++IYD L R+AQD+++R  L++GQGNFG++DGD  A
Sbjct: 64  PEGGYRKCAKIVGDVMGNYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNIDGDSAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ + A  L++ L ++ VDFRPNY  + +EPVVL A +PN+L NG  GIAVGM
Sbjct: 124 AYRYTEARMTRGAELLMEGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGATGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGR 245
           AT+IP HN+ E++D    +I+ P    + LME ++GPDFPTG VI+  R  +  AY TGR
Sbjct: 184 ATSIPPHNVAEIIDAARHLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLEAYETGR 243

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  +R   H+E T     QI+VTEIPYQV K+ +LEK++EL+  K++  + D+RDES  
Sbjct: 244 GAFRMRARWHVEDTGRGTYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDVRDESAE 303

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               V++   +    DV++  L+R   L++ FS+NM  L+   P+   L  +L+A++  R
Sbjct: 304 DVRLVLVPRAKTVEPDVLMESLFRTCDLETRFSLNMNVLHKGAPQVMGLRDVLQAYLDHR 363

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVVVRR ++ L+K   R H+L G   A  N+DEV+RIIR    P+     LM+R     
Sbjct: 364 REVVVRRAEFRLDKIEKRLHILEGFLKAYLNIDEVIRIIRTEDEPKPV---LMKR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +S++Q  AIL LRL  L  L   +I+ E   L  E  
Sbjct: 416 ---------------------FKISDIQAEAILNLRLRALRKLEEMEIQGEHTKLTEERD 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG---LLDMEDEDCIVRED 537
           E + ++ S  R    + +EL + +DE D       RR    +     L    E    +E 
Sbjct: 455 ELVLLIGSVRRQWTRVSKELKAARDEFDPSTALGRRRATFEQAPTVDLAAALEATRPKEP 514

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        R  +  G     +  ++ D  +    V +   ++F SS G 
Sbjct: 515 VTVVLSAQGWI--------RGMKGHGLDPDTIKFKEGDGPSFTEEVMSTDKLVFMSSDGR 566

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            +     +LP G  +  G+ +   + L     I  +  F  +         V A+  G  
Sbjct: 567 AFMLPADKLPGG--RGHGEPIRISIELEDNVAIVGMFKFEPERKR------VMASSTGYG 618

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                ++     ++GK  +        L+V      + I +     + + FP+  +    
Sbjct: 619 FVVPEAELESNRKAGKQIVNTGGGH--LNVCVPVLGDMIAVVGTNRKMLIFPLKDLPEMP 676

Query: 718 GRNSVGVRGIS 728
                 ++  S
Sbjct: 677 RGKGNKLQSYS 687


>gi|308189673|ref|YP_003922604.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|319776856|ref|YP_004136507.1| topoisomerase iv subunit a [Mycoplasma fermentans M64]
 gi|307624415|gb|ADN68720.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|318037931|gb|ADV34130.1| Topoisomerase IV subunit A [Mycoplasma fermentans M64]
          Length = 856

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 233/825 (28%), Positives = 399/825 (48%), Gaps = 41/825 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++  +   +    I   ++   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKNQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNK + K AR+ G+V+GKYHPHG+++IY+A+ RMAQDW +   L+E  GN GS+
Sbjct: 61  YELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL   A  ++ DL K+TV F PN+D S +EPVVL +  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A I NPDI L  L + ++GPDFPTG V+ G+ GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGGVVYGQQGIYEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  GRG I +       + + ++  I + EIPY V K+ ++  I  ++ ++ +  + +++
Sbjct: 241 FERGRGRITLVSRYRTFEDNKNKF-IEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D+SDR G  ++I L + A+ +VILN L + T +Q  ++ N VA+    P+   L  +L  
Sbjct: 300 DQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTYNNVAIKNNSPQTLGLNDLLNC 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++    +V  +  ++ L K + R  +++G        DEV+ +IR S N +    +    
Sbjct: 360 YLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSKAGVIQ---- 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +  Q  AI ELRL +L+   ++    E   L
Sbjct: 416 ---------------------NLMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDM 538
             +IK    +L+ +      + + L  +K +   PRRT I E    +   + D +  E+ 
Sbjct: 455 EKQIKHVEMLLNDKEAFDQYLIETLQEIKKQFGRPRRTTITEEAFKVSYNEADLVKEEET 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + V+  GY+KR+   V  +            +++ D +      +T  ++L F++LG  
Sbjct: 515 YIGVTKHGYLKRMSNKVVNSN-----DFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               ++++     +  G  L + + L  GE +   +   +        YV   TK    +
Sbjct: 570 AMVPIYKIEESKWKDFGVHLSDFVELVSGEELVGAINVTDFNIQ---NYVCLFTKEAQGK 626

Query: 659 RNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R  L +F +        AMKL   DE++  +      D+LL TK G    +  + ++++ 
Sbjct: 627 RVVLKEFEVSRPNKTFTAMKLRKGDELVGAKLSNGYKDVLLITKRGMASLYTENDVQIYG 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
              S G +   +   D +++ A+V  H          Y+K +       SG       + 
Sbjct: 687 T-KSNGTKSCYMPPMDSIVAFAMVEAHETLAMLANETYVKRIHVSNITKSGKKNLGKPIF 745

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                +  I  +        + +I   +++         ++ I++
Sbjct: 746 AQLKTKPYIVTDAYPM--TVDDYIFVTNDENQVLLERIVEYPITS 788


>gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 779

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 273/752 (36%), Positives = 407/752 (54%), Gaps = 65/752 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYV 72
           + I +V+I DE++  +LTYA++V+ GRA+PD+RDGLKPV RRIL+ M Q + +  +KK +
Sbjct: 3   ETIETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKKAL 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I GEVMG YHPHG++A+Y+AL RM+Q+W LR+ L+ GQGNFGSVDGDPPAA RYTE
Sbjct: 63  KCAKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + A  LLD+LG+DTVD   +YDG+  EP VL A++PN+LVNG  GIAVGMAT IP 
Sbjct: 123 AKLTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HNLGEV+  C  +IDNPD  +  L++ I+GPDFP G  IL  R  ++  Y  G GSI ++
Sbjct: 183 HNLGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIKVQ 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
                EK      QIVVT IPY VNK  +   I  ++ ++++  +    +ES+ + G R+
Sbjct: 243 AEWKEEKIDRG-VQIVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGLRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYK----PERFTLIGILKAFVA 363
           V+E+K G   ++++  LY++T LQ  +S NM AL      K     +R +L  +L  F+ 
Sbjct: 302 VLEIKNGTDPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEFLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L + R R H+L G  I    LD  +++IR S     A  +L      
Sbjct: 362 FRLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIRESSGKPDAAEKL------ 415

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L + Q  AIL+ +L ++  L    I +EL     +
Sbjct: 416 --------------------KAAFKLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQ 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVT 541
            KE   IL+S  +L G+IK EL ++ ++    R+TR+   E +L+  +E  I RE+  V 
Sbjct: 456 AKEIETILASEKKLWGVIKSELEALIEKFPERRKTRMASDEDVLEFNEEAYIARENTNVV 515

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--DEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           ++  G +KRV           G+  S    R  + D V  +   ST   V FF+  G  Y
Sbjct: 516 LTKNGRIKRV-----------GRLASVETTRVEEGDAVAAVVPGSTLDHVSFFADDGAAY 564

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVF 650
             ++  +P  +    G+ +     L  G ++   +           P    +    ++V 
Sbjct: 565 TMRINEVPATA--GYGEPITKFFKLADGAKVVAAVTTDPRFTPADLPAKGDTPGGPFLVV 622

Query: 651 ATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           AT++G V R  L+ F  +  + G+  +KL+  D+++ V     E  ++L T  G    FP
Sbjct: 623 ATRNGFVLRLPLTAFRSESTKVGRRFVKLEEGDKVVMVRLAGAEEGVMLATSGGYVTHFP 682

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           +  + + +G    GV GI L   D  +   +V
Sbjct: 683 LDQVSILSG-AGKGVIGIELESKDDCLGGVLV 713



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 49/257 (19%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           ++ F E+         V  TK+G ++R           +     +++  D + +V   + 
Sbjct: 498 VLEFNEEAYIARENTNVVLTKNGRIKRVG-------RLASVETTRVEEGDAVAAVVPGST 550

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + +      G      I+ +   AG      +   LA G +V++               
Sbjct: 551 LDHVSFFADDGAAYTMRINEVPATAGYGEPITKFFKLADGAKVVAAV------------- 597

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                           T +      D   +G+              F++  +  GF  R 
Sbjct: 598 ----------------TTDPRFTPADLPAKGDTP---------GGPFLVVATRNGFVLRL 632

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
               FR  +   K  R     K+ E   +V V      + ++L +  G +   P++++ I
Sbjct: 633 PLTAFRSES--TKVGR--RFVKLEEGDKVVMVRLAGAEEGVMLATSGGYVTHFPLDQVSI 688

Query: 873 ASRATKGVVIFSTAKDE 889
            S A KGV+       +
Sbjct: 689 LSGAGKGVIGIELESKD 705


>gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
 gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
          Length = 748

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 244/746 (32%), Positives = 377/746 (50%), Gaps = 68/746 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGKSLVPPGGGDD--IQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+     + KCA+I GEVMG +HPHG+ +IYDAL R+AQD+++R  L+ GQGNFG++
Sbjct: 59  SDMGLRSGGSFKKCAKIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++   A  L++ +G+D VDFR  YD    EP VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTESKMTAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGAT 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I  PD  ++ L+E ++GPDFPTG  VI  R  +  
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E T     QIV+TE+PYQV K+ ++EKIAEL+  +R+  + D+
Sbjct: 239 AYKTGRGGFRVRAKWETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+I   R     +++  L+R T L+S   +N+  L+  + P+   L  +L
Sbjct: 299 RDESAEDVRLVLIPKSRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A R EV+ RR+++ L     R  +L G  IA  NLDEV+RIIR    P+       
Sbjct: 359 SEWLAHRREVLQRRSRHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEPK------- 411

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                 +    T  LS+VQ  AIL +RL  L  L   +IR E +
Sbjct: 412 ----------------------LELMKTFELSDVQAEAILNMRLRSLRKLEELEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE---GLLDMEDE 530
           +L  E  E   +L+S ++    +  E+ +V+           RRT   E     L   ++
Sbjct: 450 ALTAEKAEIESLLASDAKQWQTVAWEVGNVRKTFSKETELGARRTNFAEAPVADLAAIEQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTH 586
             I +E + V +S  G++            RG KG     + +  +D D +   F  +T 
Sbjct: 510 AMIEKEPITVVISEKGWI------------RGMKGHLPDFASLQFKDGDGLKLAFHANTT 557

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             ++  ++ G  Y     +LP G  +  G+ L  ++ ++  + + T           +  
Sbjct: 558 DKLVIVTTGGKAYTLGADKLPGG--RGHGEPLRIMVDMDNDQAVLTAFV------HDSAR 609

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ A+  GN      SD +   R GK  M +   DE       +  + + +  +  + +
Sbjct: 610 KLLMASTAGNGFIVAESDMVANTRKGKQIMNVGLPDETRLCVPVSG-DHVAVIGENRKML 668

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG 732
            F +S +   +     GVR      G
Sbjct: 669 IFALSQLPEMS--RGKGVRLQRYKDG 692


>gi|188518293|ref|ZP_03003816.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998204|gb|EDU67301.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 852

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 386/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L+  L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706



 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 462 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 522 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 573

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 574 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|315651451|ref|ZP_07904474.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
 gi|315486271|gb|EFU76630.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
          Length = 745

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 239/740 (32%), Positives = 400/740 (54%), Gaps = 32/740 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  ++ + K
Sbjct: 3   EKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELKIFSDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + LI+G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKSMALIDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + A  +       TV+F  NYD + +EP VL  R PN+L+NG  GIAVGM+T+IPTH
Sbjct: 123 KLARFAEEVYLKDLDKTVEFVSNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPTH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV D C+A I N DID + L+EI+ GPDFPTG +I  +  + + Y+TG G + +RG 
Sbjct: 183 NLSEVCDTCIAYIKNRDIDTEKLLEILHGPDFPTGGIIANKRDLLDIYSTGNGKLKLRGK 242

Query: 254 SHIE--KTSGDREQIVVTEIPY---QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E  +   D+++++++EIPY         +L  +A LV  K++ D+ D+ ++SD+ G 
Sbjct: 243 IEVELGRRKSDKDKLIISEIPYTMIGTGINKLLVDVANLVETKKLSDVVDISNQSDKNGT 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + I N LY+ T L+  F VNM+A+   +PE  +L  ILK ++ F+ ++
Sbjct: 303 RIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIVEGRPEILSLRDILKNYIEFQYKI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             ++   LLNK  ++  +  GL  AV  +D ++ I+R S N   A++ L          K
Sbjct: 363 TTKKYNILLNKELEKKEIQEGLIRAVDVIDLIIAILRGSKNLAQAKKCLTSGDTTGITFK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 D           +  ++ Q +A+L++RL +L GL  + +  +       I E  
Sbjct: 423 VKSLEKDAK--------KLSFTDKQAQAVLDMRLYKLIGLEIEALLKDNEITLKNIAEYK 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +   +  +  ++L  +K E   PR+T I +    + +E+ +  E+++  +   GY 
Sbjct: 475 NILKNHKNMDKLFIKDLEKIKKEFAVPRKTYIEDAKEAVYEEEVLPSEEVIFVMDRFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  + +       +  +            +F V     +  FS+ G +YK KV  L I
Sbjct: 535 KILDRNTFDKNAENIETENKY----------VFPVMNTDRICIFSNKGILYKLKVTDLQI 584

Query: 609 GSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              + +G  + N+   +   E I  ++   ED  +    Y++  TK G V++    +F  
Sbjct: 585 SKLKDKGTPVDNLTKFDSSNENI--LLAVSED--NIQGSYILMITKKGYVKKVSFEEFKT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N+   ++ KL + D ++ V   +     DI + +     +RF IS +  F  +N+ G +
Sbjct: 641 NNKQ-VVSTKLTNDDVLVGVNLLSAGINTDIFVVSDANYILRFDISEVNEF-KKNTRGEK 698

Query: 726 GISLAKGDQVISMAIVLHAD 745
            ++L   + V +M ++    
Sbjct: 699 AMTLGYNEFVENMYLLSDTG 718



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E  ++  +IL +++KG+ K+ S  +F+ +N   K + +T ++  + +   V +     N 
Sbjct: 613 EDNIQGSYILMITKKGYVKKVSFEEFKTNN---KQVVSTKLTNDDVLVG-VNLLSAGINT 668

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            I +VSD   ++R  ++E+    + T+G    +   +E V ++  + ++ I +
Sbjct: 669 DIFVVSDANYILRFDISEVNEFKKNTRGEKAMTLGYNEFVENMYLLSDTGIAE 721


>gi|188518298|ref|ZP_03003819.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195867504|ref|ZP_03079507.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551137|ref|ZP_03772083.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998129|gb|EDU67226.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660748|gb|EDX54002.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378952|gb|EEH01317.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 386/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L+  L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706



 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 462 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 522 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 573

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 574 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
          Length = 769

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 368/773 (47%), Gaps = 79/773 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++H+       E     + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MSQHVSVPSPVGED---YLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 58  RDMGLAAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 118 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 178 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 238 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 297

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 298 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 357

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 358 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 418 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 449 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 509 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 560 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 613

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
             +     + + +   G     KL D +   ++GK+ M +DS + +L             
Sbjct: 614 --TGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +  I+L +   + + F I  ++V       G++ +SL +G  +  + +   A+
Sbjct: 672 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTEGASLEHVLVTTAAE 722


>gi|145642255|ref|ZP_01797821.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273060|gb|EDK12940.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 566

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/584 (39%), Positives = 340/584 (58%), Gaps = 36/584 (6%)

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++LN LY  T +Q  F +NMVAL+  +P  F L  I+++FV  R EVV RR+ + L KAR
Sbjct: 1   MVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKAR 60

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW----NASDIKDLIDLIDDS 437
           +R H+L GLA+A +N+DE++ IIR S N E A   +  RSW    +  ++ D+    D+ 
Sbjct: 61  ERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDEL 120

Query: 438 SYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
              +G  G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  R
Sbjct: 121 EENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAER 180

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I++EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y
Sbjct: 181 LMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDY 240

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+
Sbjct: 241 EAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGR 300

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            ++NIL L + ERIT I+P    E    + +VV AT  G V++  L++F +   +G IA+
Sbjct: 301 PIVNILPLQENERITAILPVSAYEE---DKFVVMATAGGIVKKIALTEFSRPRSNGIIAL 357

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V+     N+I+L +  G+ VRF  +A+R    R + GVRGI LA      
Sbjct: 358 NLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMG-RLATGVRGIKLA------ 410

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                L  D   DE                 + E+I+    ++S++ NI +     +   
Sbjct: 411 -----LTNDISDDESAV--------------EIEDISDDNAEASLDLNIDKVVSLVVPKG 451

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V + DQI+L+
Sbjct: 452 EGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLI 509

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D GTL+R  V+E+ I  R T+GV +  TA DE VVS+ER+ ++
Sbjct: 510 TDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLERVCDA 553


>gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23]
 gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23]
          Length = 749

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 371/759 (48%), Gaps = 71/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRP----FFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A +I     ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +  
Sbjct: 237 NLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDG 291

Query: 299 L--RDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
              RDESD +    ++   R      + ++  L+  T L+    VN+  +    +P+   
Sbjct: 292 EGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKP 351

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  +++FR + V RR KY L K   R H+L GL IA  NLD+V+ IIR    P+  
Sbjct: 352 LKQLLSEWLSFRSDTVTRRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPV 411

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ R                            LS+ QT  IL+ +L +L  L    I
Sbjct: 412 ---LIAR--------------------------FGLSDAQTEYILDTKLRQLARLEEMAI 442

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R+E ++L  E  E   IL S  +L  +IK ELL+        RR  +V  +    +++ +
Sbjct: 443 RSEQDALTKERDEINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESE 502

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E M V +S  G++        RA +      SG+  R+ D +       +   V F
Sbjct: 503 LVASEPMTVVLSEKGWI--------RAAKGHDVDPSGMFYREGDRLLAAVRTRSTHQVSF 554

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y   V  LP  S +  G+ L    S   G     +       S+ N+   V A
Sbjct: 555 LDSEGRAYSTLVHTLP--SARGNGEPLTGRFSPAPGASFQAM------ASADNDKLFVLA 606

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFP 709
           + HG     +  +    N++GK  + L    +++ +   T  Q + I+  T  G  +   
Sbjct: 607 SSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVTSAGNLLAIA 666

Query: 710 ISAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHA 744
            S +         G + I + K     ++++++  V  +
Sbjct: 667 ASELPELD--KGKGNKLIDIPKTKLATERLVAVIAVASS 703


>gi|227872281|ref|ZP_03990640.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841893|gb|EEJ52164.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 744

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/761 (32%), Positives = 415/761 (54%), Gaps = 30/761 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SYL Y+++VI  RA+PD+RDGLKPV RR+LF M ++ V  ++  +K
Sbjct: 3   EQILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLFDMGELRVFHDRPTLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  +AQ +     L+EGQGNFGS++GD  AA RYTE 
Sbjct: 63  SARICGDTMGKYHPHGDSSIYETLVVLAQGFKKNQALVEGQGNFGSIEGDSAAAPRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K    +L      +V F+PNYDG  +EPVVL A+ P  L+NG  GIAVGM T+ P+H
Sbjct: 123 RLEKFTEEVLLQDLALSVPFQPNYDGKLEEPVVLPAKIPYFLLNGSEGIAVGMTTSTPSH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+   ++ + NP++ L  ++EI+ GPDFPTG ++  ++ ++  Y TG+G + +RG 
Sbjct: 183 NLSEVISLILSYLKNPELSLSEMLEIMPGPDFPTGGIVANQSELEEIYRTGQGRLRLRGK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
              EK  G  DR+++VVTEIPY +     +  ++ +A L  EK+I DI D+ ++S+ QG 
Sbjct: 243 LSFEKKEGRSDRDKLVVTEIPYTMVGQGISKFMQDVANLCEEKKINDILDISNQSNEQGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK GA  + I N LY+ T L+  F VNM+A+   +PE  +L  IL+ ++ F+ E 
Sbjct: 303 RIVLELKSGADIEKIENILYKKTKLEDSFPVNMLAIAHGRPETLSLKRILEEYLGFQVER 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +  +   LL K   +  +  GL  AV  +D ++ ++R + N + A+  LMQ   +   +K
Sbjct: 363 LEAKFSKLLEKEERKREIEEGLISAVDCIDAIIALLRGAKNHKDAKTALMQGDLSLIQLK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           +  ++   +            +++Q +AIL++RL++L GL    ++         IK   
Sbjct: 423 ERDEVFRKTIEG------FRFTDLQAQAILDMRLSKLIGLEILSLQKSHRESLKNIKNYK 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++L S+  L   ++QELL ++ +    R+T+I +    + D+  I   D+       GYV
Sbjct: 477 ELLGSKKVLYAHLEQELLQIQKDYGKERKTKICDAREAVYDDTAIEEMDLYYLQDRFGYV 536

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    ++  +   +               +        +LFF+ LG +++ K+  +P+
Sbjct: 537 KCVDPGTFQRNKESIEADYAY----------VLPCKNTDRLLFFTDLGNMHQIKILDVPV 586

Query: 609 GSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              + +G  L N+   +   ER+  +      E       ++F T+   ++R K  +F  
Sbjct: 587 TKFKDKGVPLDNLSKFSAEQERVVAVFIRKVLEEE----TLLFVTEQAQIKRVKGEEFAT 642

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            NR    A KL   D +LSV    +E+ I+L T+    +RF +S +     + + GV  +
Sbjct: 643 QNRL-VQATKLGEEDRLLSVLPVGEED-IVLETEDSYFLRFSLSEV-PLQKKTAKGVLAM 699

Query: 728 SLAKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISG 767
           SL   D V  + ++    + + + +   ++ +   +R   G
Sbjct: 700 SLRPKDYVKKVYSLAAEENVELESKTLNLQRLKQGKRGGKG 740



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 7/110 (6%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           L+E+ +L V+E+   KR    +F   NR    ++AT + + +    L++V PV + D I+
Sbjct: 618 LEEETLLFVTEQAQIKRVKGEEFATQNR---LVQATKLGEEDR---LLSVLPVGEED-IV 670

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           L ++    +R  ++E+ +  +  KGV+  S    + V  V  +   E V+
Sbjct: 671 LETEDSYFLRFSLSEVPLQKKTAKGVLAMSLRPKDYVKKVYSLAAEENVE 720



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             V    A  +  + Y++      + +   T +        + E   ++           
Sbjct: 513 EAVYDDTAIEEMDLYYLQDRFGYVKCVDPGTFQ-------RNKESIEADYAYVLPCKNTD 565

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVNDNDQIIL 855
            +L  ++ G   +    D  ++    KG+     +  S   E    V +  V + + ++ 
Sbjct: 566 RLLFFTDLGNMHQIKILDVPVTKFKDKGVPLDNLSKFSAEQERVVAVFIRKVLEEETLLF 625

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           V+++  + RV   E    +R    V      +++R++SV  + E +IV E E +
Sbjct: 626 VTEQAQIKRVKGEEFATQNRL---VQATKLGEEDRLLSVLPVGEEDIVLETEDS 676


>gi|209554161|ref|YP_002284902.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541662|gb|ACI59891.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 855

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 225/739 (30%), Positives = 385/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKILKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T++ +     ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 IVSKKSFESSKYDELG-----LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++  +  
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++    ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D++ S+ IV +  
Sbjct: 691 MKLKPNDEISSILIVPNNG 709



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 601 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 657

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 658 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 706


>gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12]
 gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12]
          Length = 749

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 232/759 (30%), Positives = 371/759 (48%), Gaps = 71/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRP----FFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A +I   + ++
Sbjct: 177 TGIAVGMATDVPPHNLNEITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +  
Sbjct: 237 NLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDG 291

Query: 299 L--RDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
              RDESD +    ++   R      + ++  L+  T L+    VN+  +    +P+   
Sbjct: 292 EGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKP 351

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  +++FR + V RR KY L K  +R H+L GL I   NLD+V+ IIR    P+  
Sbjct: 352 LKQLLSEWLSFRSDTVTRRLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIRNEDEPKPV 411

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ R                            LS+ QT  IL+ +L +L  L    I
Sbjct: 412 ---LIAR--------------------------FGLSDAQTEYILDTKLRQLARLEEMAI 442

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R+E ++L  E  E   IL S  +L  +IK ELL+        RR  +V  +    +++ +
Sbjct: 443 RSEQDALTKERDEINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESE 502

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E M V +S  G++        RA +      SG+  R+ D +       +   V F
Sbjct: 503 LVASEPMTVVLSEKGWI--------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSF 554

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y   V  LP  S +  G+ L    S   G     +       S+ N+   V A
Sbjct: 555 LDSEGRAYSTLVHTLP--SARGNGEPLTGRFSPAPGASFQAM------ASADNDKLFVLA 606

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFP 709
           + HG     +  +    N++GK  + L    +++ +   T    + I+  T  G  +   
Sbjct: 607 SSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAIA 666

Query: 710 ISAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHA 744
            S +         G + I + K     ++++++  V  +
Sbjct: 667 ASELPELD--KGKGNKLIDIPKTKLATERLVAVIAVASS 703


>gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
 gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
          Length = 751

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 376/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A I+  T  I+
Sbjct: 177 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 237 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 292 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 352 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 410 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 443 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 503 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     ++   +D+        + A+ 
Sbjct: 555 SAGKSYALPAHTLP--SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 607 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 667 ELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSS 705


>gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15]
 gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15]
          Length = 759

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/732 (33%), Positives = 376/732 (51%), Gaps = 65/732 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    +T+ +   YL YA++ I  RA+PD+RDGLKPVHRR+L+ M  M +  +    KC
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ GEVMG +HPHG+A+IYDAL R+AQ++S R+ L+EGQGNFG++DGD  AA RYTEC+
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +AA  LLD + +D VDFRP YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
             E++D C  ++ NPD     L+E + GPDFPTG VI+  R  +   Y TGRG + +R  
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES      V+  
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEP 316

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRR 372
             +    +V++  L++ ++L+S F VN+  L+    P    +   L AF+A R EV+ RR
Sbjct: 317 KSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L K   R H+L GL IA  NLDEV+RI+R+   P+                     
Sbjct: 377 ARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKE-------------------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  L+++Q  AIL  RL +L  L   +IR E   L  E    L +L+
Sbjct: 417 ---------KLIETFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILAMLA 467

Query: 493 SRSRLLG-------IIKQELLSVKDELDTP------RRTRIVEGLL---DMEDEDCIVRE 536
           S ++           ++  LL +K  LD P       R+   E      D   E  IVRE
Sbjct: 468 SEAKQWKLVGVGLSEVRAALLKIKHPLDKPAPTGVTGRSVFGEAPQVDADAAIEAMIVRE 527

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA +      S +  ++ D +  L    T   +L FSS G
Sbjct: 528 PITIILSERGWI--------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKLLIFSSDG 579

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             +     +LP  S +  G+ +  ++ L+   +I  + PF            + A+K G 
Sbjct: 580 RFFTLGCDKLP--SARGHGEPVRMMIELDDKVKIIDVFPFKAGRKR------ILASKGGY 631

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                  + +   ++GK  + +   +E  +       + + +    G+ + FP+  +   
Sbjct: 632 GFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIFPLEELPEM 689

Query: 717 AGRNSVGVRGIS 728
                V ++   
Sbjct: 690 PRGKGVKLQAYR 701


>gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 769

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 236/799 (29%), Positives = 373/799 (46%), Gaps = 80/799 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E    S   E+     + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MNEQATLSPVGEDY----LLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 57  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 117 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 177 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 237 IYETGKGSVRVRARYEIEKLARGQWRMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 296

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 297 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 356

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 357 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 416

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 417 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 447

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 448 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 507

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 508 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 558

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 559 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML---- 612

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
             +     + + +   G     KL D +   ++GK+ M +DS + +L             
Sbjct: 613 --TGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 670

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I+L +   + + F I  ++V       G++ +SL  G  +   A++  A+   +   
Sbjct: 671 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTDGASLEHTAVISSAEFTVETVG 728

Query: 753 CYMKHMSAQRRLISGDTEE 771
                   + R+   D + 
Sbjct: 729 RRGAVHQERLRIRDIDGKR 747


>gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 753

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 229/759 (30%), Positives = 375/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 119 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A +I     I+
Sbjct: 179 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIR 238

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 239 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 293

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 294 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 354 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 411

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 412 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 444

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 445 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 504

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 505 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 556

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     ++   +D+        + A+ 
Sbjct: 557 SAGKSYALPAHTLP--SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASD 608

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 609 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 668

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 669 ELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSS 707


>gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 751

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 375/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A +I     I+
Sbjct: 177 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 237 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 292 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 352 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 410 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 443 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 503 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     I+   +D+        + A+ 
Sbjct: 555 SAGKSYALPAHTLP--SARGLGDPLTSRLKPASGAHFVGILMGADDD------LFLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 607 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 667 ELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSS 705


>gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
 gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
          Length = 753

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 230/759 (30%), Positives = 375/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 119 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A +I     I+
Sbjct: 179 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIR 238

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 239 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 293

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 294 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 354 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 411

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 412 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 444

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 445 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 504

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 505 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 556

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     I+   +D+        + A+ 
Sbjct: 557 SAGKSYALPAHTLP--SARGLGDPLTSRLKPASGAHFVGILMGADDD------LFLLASD 608

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 609 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 668

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 669 ELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSS 707


>gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
 gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
          Length = 745

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 248/795 (31%), Positives = 394/795 (49%), Gaps = 63/795 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + + +  E  E  +    + D +   YL YA++ I  R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MPDDLTTLPEGGE--VRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCARI G+VMGKYHPHG+AAIYDA+ R+AQ+++ R  L+EGQGNFG++
Sbjct: 59  HQLRLDPAAGFKKCARIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  +L+ + ++ VDFR  YDG  QEP+VL A +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARLTEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN GE+    + +IDNP  +LD L+ ++ GPDFPTG V++     I+ 
Sbjct: 179 GIAVGMATSIPPHNAGELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   IR     EK      QI+VTEIPYQV K+ ++E+IA+L+ EK++  +AD+
Sbjct: 239 AYATGRGGFRIRARWAEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R     V++  L+R TSL++ F +NM  L+  + P    L  +L
Sbjct: 299 RDESTDVVRIVLEPKSRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R  V+VRR+++ L     R  +L G  I   NLDEV+RIIR   +P+ A   LM
Sbjct: 359 RCWLDHRHVVLVRRSEHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPA---LM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 416 AR--------------------------FALTETQAEAILNMRLRSLRKLEEMEIRKEHK 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDED 531
            L  E K    +L S  +    I +E+ + +           RR+ +      + +++  
Sbjct: 450 KLSAEQKSLQALLGSEGKRWKRIAEEIAATRARFGEETELGRRRSTLDAAPAAVVIDERA 509

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            + RE + V +S  G++        RA +      +    ++ D +       T   +  
Sbjct: 510 FVEREMITVILSEKGWI--------RAVKGHLPPETEHKFKEGDRLRAALHAETTDRICL 561

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G  +  K   +P G  +  G+ +  ++ L   + + ++  +  +         + A
Sbjct: 562 FATNGKCFTLKADAIPRG--RGDGQPVRLMVDLTNEDEVVSLFVWRPERK------FLVA 613

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708
              G     K  D     R+GK  + +D       ++      + + + +  +  + + F
Sbjct: 614 ASDGRGFVVKSEDLTAEKRTGKQVLLVDSPVEAARLIPA----EGDTVAIIGENRKLLVF 669

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +        V ++G        V   +          ER+     ++  R   +G 
Sbjct: 670 PLEQVPEMVRGRGVTLQGYKDGGMADVKVFSAREGLTWKIGERVRMETDLTTWRGNRAGA 729

Query: 769 TEEITSLKNDSSVEG 783
             +  +    ++  G
Sbjct: 730 GRQPPNGFPKTNRFG 744


>gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31]
 gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31]
          Length = 759

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 244/754 (32%), Positives = 379/754 (50%), Gaps = 73/754 (9%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M + ++      +   I    +++ +   YL YA++ I  RA+PD+RDGLKPVHRR+L  
Sbjct: 1   MNKPVLPPGGPGDGDRILDEPLSEALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  M +       KCA++ GEVMG +HPHG+ +IYDAL R+AQ++S R+ L++GQGNFG+
Sbjct: 61  MNNMRLNPEGGARKCAKVVGEVMGNFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTEC++  AA  LLD + +D VDF+P+YDG  +EPVVL + +PN+L NG 
Sbjct: 121 IDGDSAAAMRYTECKMTAAAVLLLDGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT+IP HN  E++D C+ ++  P+     ++E + GPDFPTG VI+  R  + 
Sbjct: 181 SGIAVGMATSIPPHNPAELIDACLLLLSKPEATTAEILERVPGPDFPTGGVIVESRESLL 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG +  R     E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D
Sbjct: 241 ETYETGRGGVRTRAKWEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGI 357
           +RDES      V+    +    +V++  L++ ++L+S F VN+  L+    P    +   
Sbjct: 301 VRDESAEDIRLVLEPKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQA 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L AF+A R +V+ RR +  L+K   R H+L GL IA  NLDEV+RI+R+   P+      
Sbjct: 361 LIAFLAHRRDVLTRRARNRLSKIEARLHILDGLLIAYLNLDEVIRIVRYEDEPKQ----- 415

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          LS++Q  AIL  RL +L  L   +IR E 
Sbjct: 416 ------------------------KLMAAFALSDIQADAILNTRLRQLAKLEEMEIRREH 451

Query: 478 NSLGIEIKECLDILSSRSRLLG-------IIKQELLSVKDELD-TPR------RTRIVEG 523
             L  E    L +L+S  +           ++  LL +K  LD T R      R+   + 
Sbjct: 452 AQLVEERDGILAMLASDKKQWDLVGTGLRQVRAVLLKIKHPLDKTGRATGVIGRSVFEDA 511

Query: 524 ---LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                +   E  IVRE + V +S  G++        RA +   +  S +  ++ D +  L
Sbjct: 512 PVVDAEAALEALIVREPITVILSDRGWI--------RAAKGKVEDPSELKFKEGDKLGFL 563

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
               T   +L F+S G  +      LP  S +  G+ +  ++ L+   +I  + PF    
Sbjct: 564 VPAETTDKLLLFTSDGRFFTIGCANLP--SARGHGEPVRMMIELDDKVKIIDVFPFKAGR 621

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILL 698
                     A+K G        + +   ++GK  + +D+         C +   + + +
Sbjct: 622 KR------FLASKQGYGFLMPEEEALANRKAGKQVLTVDAA----GAAFCLEAVGDQLAV 671

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
               G+ + FP+  +         GV+  S  +G
Sbjct: 672 VGDNGKILIFPLEELPEMP--RGKGVKLQSYREG 703


>gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331]
 gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331]
          Length = 751

 Score =  479 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/759 (30%), Positives = 375/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A +I     I+
Sbjct: 177 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIR 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 237 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 291

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 292 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 352 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 410 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 443 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 503 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     ++   +D+        + A+ 
Sbjct: 555 SAGKSYALPAHILP--SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASD 606

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 607 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 666

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 667 ELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSS 705


>gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
 gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
          Length = 787

 Score =  479 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 246/757 (32%), Positives = 379/757 (50%), Gaps = 75/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D      I      + +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 26  MTDFRDPFD-----AIKDHPFDEALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 80

Query: 61  MQMGVEWNKK---------------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
             + +E                   Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+S
Sbjct: 81  RLLRMEPGGASADVLTANPARNTTAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFS 140

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR  L++GQGNFG++DGD  AA RYTE RL +AA  L+  L + TVDFRP Y+G  +EP 
Sbjct: 141 LRTPLVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPE 200

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V    +PN+L NG  GIAVGMAT+IP HN+ E++D    +ID+PD D  ALM+I+RGPDF
Sbjct: 201 VFPGLFPNLLANGASGIAVGMATSIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDF 260

Query: 226 PTGAVILGRTGIK-NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           PTG V++    I   AYATGRG+   R   H E         VVTEIPYQV K+ ++E+I
Sbjct: 261 PTGGVLVDSPSIIAEAYATGRGAFRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQI 320

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           A L+ +K++  +AD+RDESD     V+    R     V+++ L+R T L++ F +N+  L
Sbjct: 321 AALINDKKLPILADVRDESDADIRIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVL 380

Query: 345 NG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +  + P    L  +L  ++  + +V+VRR ++ L+K   R  +L G  IA  NLD V+ I
Sbjct: 381 DSTHTPRVLGLKPLLVEWLRHQIDVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEI 440

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR    P+                                     L++ Q  AIL +RL 
Sbjct: 441 IRTEDEPKEV-----------------------------MMVEFGLTDRQAEAILNMRLR 471

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRT 518
            L  L   ++R E + L  E  E   ++ S +R    +K++L +++           RRT
Sbjct: 472 SLRKLEEMELRREHDELLKERDELEKLVESPARQRTRLKKDLAALRKRYGPETDLGRRRT 531

Query: 519 RIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            + E     ++  E  I RE + V +S  G+++ +         R       +  ++ D 
Sbjct: 532 LVEEAAPAREIPLEAMIEREPITVILSERGWIRAMSG------HRDLAAADTLKFKEGDG 585

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
               F   T   +L  +S G V+     +LP G  +  G  + +++ ++    I  +MP 
Sbjct: 586 PQFAFHAYTTDKLLLATSTGRVFTLSSDKLPGG--RGFGDPVRSLVDMDNEGAIVALMP- 642

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
                +     ++ A+  G      ++D +   R GK  + + +   +  V   T + + 
Sbjct: 643 -----ARAGGDLLLASSDGRGFIAAMADIMAETRKGKQVVNVRAGARLAVVHPVTADADS 697

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           I +  +  + + F IS +   A     GV+      G
Sbjct: 698 IAVIGENRKLLVFAISEMPRMA--RGQGVQLQRYRDG 732


>gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493]
 gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493]
          Length = 753

 Score =  479 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/759 (30%), Positives = 375/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 119 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A +I     I+
Sbjct: 179 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIR 238

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 239 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 293

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 294 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 354 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 411

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 412 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 444

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 445 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 504

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 505 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 556

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     ++   +D+        + A+ 
Sbjct: 557 SAGKSYALPAHILP--SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASD 608

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 609 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 668

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 669 ELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSS 707


>gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
          Length = 753

 Score =  479 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 229/759 (30%), Positives = 375/759 (49%), Gaps = 66/759 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTPN----ALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG 
Sbjct: 119 DDPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGT 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A +I     I+
Sbjct: 179 SGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIR 238

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+GS+ +R     E       +IV+T +P+QV+   ++E+IA  +  K++  ++D
Sbjct: 239 TLYRTGQGSLRMRATYQKENG-----EIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSD 293

Query: 299 LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++   R    +   ++  L+  T L+  + VN+  +    +P+   LI
Sbjct: 294 IRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLI 353

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+    
Sbjct: 354 SLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPV-- 411

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q  AILE++L +L  L    IR+
Sbjct: 412 ---------------------------LMKKFKLSDRQAEAILEIKLRQLAKLEEKKIRD 444

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCI 533
           E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ +
Sbjct: 445 EQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEMV 504

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        RA +        +  R  D         T+   +F  
Sbjct: 505 PSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFLD 556

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +  G  L + L    G     ++   +D+        + A+ 
Sbjct: 557 SAGKSYALPAHILP--SARGLGDPLTSRLKPASGAHFVGVLMGADDD------LFLLASD 608

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPIS 711
            G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI+
Sbjct: 609 AGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIA 668

Query: 712 AIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
            +          +  I    +A  ++      VLH  + 
Sbjct: 669 ELPELPKGKGNKIIQIAPSRVANREEYCVALAVLHEKSS 707


>gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  479 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 226/648 (34%), Positives = 347/648 (53%), Gaps = 56/648 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG 
Sbjct: 117 DDPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT A I+  R  I 
Sbjct: 177 TGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEIL 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +AD
Sbjct: 237 KMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVAD 291

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +     V+I       AD ++  L+  T L+S + VN+  +    +P+   L 
Sbjct: 292 LRDESDHENPCRIVIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDGRPQLKNLR 351

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A  
Sbjct: 352 TILVEWLEFRTHTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQA-- 409

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            L+E+Q   ILE RL +L  L    IR 
Sbjct: 410 -LIAR--------------------------FGLTEIQADYILETRLRQLARLEEMKIRG 442

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  +   +L S ++L  +++ EL+   +     RR+ IVE      + + + +
Sbjct: 443 EQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVERAEAKALSENELM 502

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S  G++        R  +      +G+  +  D         ++   +   
Sbjct: 503 PTEPVTVVLSEKGWI--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLID 554

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           S G  Y      LP  S + +G+ L   L+   G     ++  PED++
Sbjct: 555 STGRSYSLAAHSLP--SARGQGEPLTGRLTPPPGATFDCVL-LPEDDA 599


>gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
 gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
          Length = 738

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 246/768 (32%), Positives = 392/768 (51%), Gaps = 60/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KQAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+DD+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  +++ +M  I+GPDFPTG +I+ +   I  AY+TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES      V
Sbjct: 242 RSRWKKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    R     V++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +V
Sbjct: 302 IEPRDRNCDPQVVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L GL IA  N DE+++IIR    P+                  
Sbjct: 362 TRRSTYLLNKIQHRLEILEGLRIAYLNFDEIIKIIREEDEPKAI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AIL  RL  L  L    I NE ++L  +     +
Sbjct: 406 -------------MINWFKLTEIQVEAILNTRLRSLHRLEEQKIINEHSNLKKQQVILEE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL++   L  ++K+E+ +V+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSFKGHNNDLSNIKYKEGDTEKFILKAYTTDKLLIVSSEGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G      +++  ++ +   + IT I+ +  D+       ++ A+  G      
Sbjct: 565 LADNISKGKGTE--ESIKLLVDIGNND-ITNILVYKPDQ------LLLLASSIGKGFLVN 615

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ I   ++GK  M + +   I         + +    +  + + F I  I     +  
Sbjct: 616 SNEVIAQTKTGKQIMNVPNG-HICITCLPANGDSVACIGESRKLLVFNIDEIPEM--KKG 672

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            GV      K  +++ + I    D         +K        +    
Sbjct: 673 QGVTLQKF-KDAKLLDVKIFNKEDGLGWNNNGKVKLEKNIITFLGKRG 719


>gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110]
 gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 798

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 248/784 (31%), Positives = 381/784 (48%), Gaps = 83/784 (10%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D +    G T++++ D  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDSQPPLDLQGPTDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYS 60

Query: 60  MMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +         K VK AR+ G+V+G++HPH + A YDAL RMAQD+S R  L +
Sbjct: 61  MSRMGLGFGGANGTVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLAD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL +    LLD++ + TVDF PNYDGS +EP +L AR P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVI 231
             L+NG  GIAVG+AT IP+HNL E+ D CVA+I +   +  + L++I+ GPD+P GA I
Sbjct: 181 FTLLNGASGIAVGLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQI 240

Query: 232 L-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           + G   I +AY TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   
Sbjct: 241 ISGPADIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNP 300

Query: 291 KRIVDIAD------------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRY 330
           K                         +RDES +     ++        S D  +  L   
Sbjct: 301 KVKAGKKALSADQTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQ 360

Query: 331 TSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           TSL++   +N+  +    KP + +L  +L  ++AFRE  V +R+++ LNK  DR H+L G
Sbjct: 361 TSLETSSPINLTMVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEG 420

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
             + + N+DEV+ IIR + +P+ A   L+ R                            L
Sbjct: 421 RQLVLLNIDEVIAIIRAAEDPKAA---LIAR--------------------------FNL 451

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           SEVQ   ILE+RL +L  L    I+ +L+ L  E K+  DIL S + L  ++ +E+ +  
Sbjct: 452 SEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEADA 511

Query: 510 DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              + PRRT I      + +   +V E + V VS  G+V+             G      
Sbjct: 512 KTFEDPRRTLIQAEKRAVAE-VKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGTAPEY 570

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSS----LGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             +  D +   F   +  ++L F S       VY   V  LP    +  G+ +  ++ L+
Sbjct: 571 SFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGA--RGDGQPVTTLIELD 628

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            G  +T     P   S      V+ A   G      + + +   R GK  + +   +++ 
Sbjct: 629 AGTHVTHFFAGPVGAS------VLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLC 682

Query: 686 SVETCTQEN---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                   +          +   +  G+ + F I+ ++    +   G+  I L   D + 
Sbjct: 683 RPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLP-KGGRGLTLIDLDAKDTLA 741

Query: 737 SMAI 740
             A 
Sbjct: 742 GAAA 745



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI----NEIGALVAVFPVNDNDQIIL 855
           +L  +  G+G   +  +     R GK        +     + +G      P+     +  
Sbjct: 645 VLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVAC 704

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            S  G ++   + E++   +  +G+ +      + +    
Sbjct: 705 ASTGGRILTFDIAELKSLPKGGRGLTLIDLDAKDTLAGAA 744


>gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
 gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
          Length = 765

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/797 (29%), Positives = 378/797 (47%), Gaps = 84/797 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+ GRA+P ++DG KPV RRILF M  MG+    K VK AR+ 
Sbjct: 14  LNLAQYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLTHGAKPVKSARVV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   
Sbjct: 74  GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPL 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDG+F+EP  L AR P VL+NG  GIAVGMAT IP+HNLGEV
Sbjct: 134 AELLLSEINQGTVDFIPNYDGAFEEPESLPARLPMVLLNGASGIAVGMATEIPSHNLGEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
               VA++ NP +    L   I  PDF  GA I+     I   Y TG+GSI +R    +E
Sbjct: 194 AQAAVALLKNPALTTADLHHHIPAPDFAGGAHIITPAKDIAQIYETGKGSIRVRARYDVE 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DL 299
           K +  + ++VV+E+P   + A +L +I E    K                         +
Sbjct: 254 KLARGQWRVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLLEKV 313

Query: 300 RDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD +    ++   +      +  +N L   TS++   SVN+V +    +P +  L  
Sbjct: 314 RDESDGEHPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVSVNLVMMGLDNRPAQKNLKT 373

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ +R   V RR ++ L+    R H+L G  IA  ++D+V+++IR +  P+     
Sbjct: 374 ILQEWLDYRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHIDQVIKVIREADEPKP---- 429

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E+Q   ILE+RL +L  L    I  E
Sbjct: 430 -------------------------ELMAAFQLTEIQAEDILEIRLRQLARLEGIKIERE 464

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           LN L  E      +L   +    +I +E+ +   +    RRT +VE             E
Sbjct: 465 LNELREEAGSLKTLLGDENEKRKLIIKEIQADAKQFGDARRT-LVEAAERATLTQTTADE 523

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+   G   + +  ++ D +  +    T   V+ + S G
Sbjct: 524 PITLILSQQGWL--------RARAGHGVDAAQIAFKEGDALQQVLETRTVQPVVVWDSHG 575

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G  +  G  + +++ L     +  ++    D+      Y + +  HG 
Sbjct: 576 RSYTLDAAEIPKG--RGDGVPIASLIELPSQASVVALLAGAADD------YYLLSGCHGY 627

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPI 710
               KL D     ++GK  + LD  +  L             ++ I+L +   + + FP+
Sbjct: 628 GFIAKLEDLFTRQKAGKAVLTLDDNETALPPVRIANDWLIAPDSRIVLASANKRLLAFPV 687

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +++ A     G++ I L+ GD +        A A       Y  H+  +R  I  +T 
Sbjct: 688 SEMKIMA--KGRGLQLIKLSDGDTL--------ALASALTSEHYTLHIIGKRGAIHQETL 737

Query: 771 EITSLKNDSSVEGNISE 787
            I  +    + +G + +
Sbjct: 738 RIADIAGKRAGKGKLLD 754


>gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
 gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
          Length = 735

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 237/756 (31%), Positives = 380/756 (50%), Gaps = 56/756 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    
Sbjct: 3   ETAGHIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+V+GK+HPHG+A++Y+AL R+AQD++ R  L+EGQGNFGSVDGD PAA RY
Sbjct: 63  FKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD +  D VDFRP YDG  QEPVVL + +PN+L NG  GIAVGMAT+I
Sbjct: 123 TEARLTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIV 249
           P HN  EV      ++  P      L+E++ GPDFPTG +I+     I  AY TGRGS  
Sbjct: 183 PPHNAAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFR 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +E+       IVVT+IPYQV K+ ++E+IA+L+ +K++  + D+RDES  +   
Sbjct: 243 MRARWEVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRL 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEV 368
           ++    RG   +V++  L+R T L+S F +NM  L   +      L  +++A++  R EV
Sbjct: 303 ILEPKTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+++ L     R  +L G      NLDEV+RIIR   +   A+  L+          
Sbjct: 363 LERRSRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREEDD---AKASLIA--------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  L+++Q  ++L +RL  L  L   +IR E ++L  E    +
Sbjct: 411 -----------------TFKLTDLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEQAALM 453

Query: 489 DILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLL--DMEDEDCIVREDMVVTV 542
            +L S  +    I++EL ++           RR+ I+      D+   + + RE + + +
Sbjct: 454 ALLDSEKQRWKTIERELTTMIKAFGKGRLGERRSTILSAPKPVDISVVEEVEREPLTMIL 513

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G+V        RA +           ++ D         T   + FF++ G  Y  K
Sbjct: 514 SQKGWV--------RAVKGHNVDLENQKFKEGDAFKLAIPCQTSDRLCFFATDGRAYTVK 565

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP G  +  G+ +  ++ L+  E +  + P  + +        + A+  G     + 
Sbjct: 566 GADLPRG--RGDGQPIRLLIDLSNDEDLLAVFPIEDGKRR------LVASSAGRGMLVEE 617

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              +   RSG+  + L    E   +    + + + +     + + FP+  + V A    +
Sbjct: 618 EALVAEKRSGRQVLNLKEG-EFARICVPAEGDHVAVVGDNRRFLIFPLEQLPVMA--RGL 674

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           GV     + G  +    +   AD  +      ++  
Sbjct: 675 GVALQKYSDGGGLRQAVVFTAADGLHWPGTARVRQF 710


>gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
 gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
          Length = 758

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 235/744 (31%), Positives = 367/744 (49%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H           I   +  + +   YL YA++ I  RA+PD RDGLKPVHRR+L+ M
Sbjct: 1   MGDHFDPDGGH----IIEETFNEALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  ++ + K AR+ G+V+GKYHPHG+ ++Y+AL R+AQD++ R  L+EGQGNFG++
Sbjct: 57  RELKLNPDQAFKKSARVVGDVIGKYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL KAA  LL D+ + TVDF   YDGS +EP+VL   +PN+L NG  
Sbjct: 117 DGDGAAAMRYTEARLTKAAELLLQDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT++P HN+ E+    +A+ID P+ + +AL++ I+GPD PTG  I+     I++
Sbjct: 177 GIAVGMATSVPPHNVAEICAAALALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       +IVVTEIPY V K+ ++E+IA+L+  K++  + D+
Sbjct: 237 AYETGRGGFRVRAKWEKEDIGRGMWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V+    +    D+++  L++ T L++  S+N+  L+    P    L  +L
Sbjct: 297 LDESTEDIRLVLEPKSKLVDPDMLMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R EV VRR    L K  DR  VL G  I  A+LDEV+RIIRF   P+       
Sbjct: 357 QIWLEHRREVAVRRATTRLAKVEDRLEVLAGYLIVYADLDEVIRIIRFEDEPKA------ 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 411 -----------------------KLMAHFELTERQAEAILNMRLRALRKLEELEIRKEDT 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG---LLDMEDE 530
           +L  E K   +++ S +     ++ E+ S+ +          RRT   +      +   E
Sbjct: 448 NLRAERKTLKELIGSTALQWDKVRGEVKSLGEIYAETTPLGKRRTVFDKAPDISGEAPIE 507

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             +VRE +   +S  G+V        RA +      + +  ++ D         T   +L
Sbjct: 508 AFVVREPITAVLSERGWV--------RALKGHINDVTELKFKEGDKSAFAVKCETTDRLL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y  +  +LP G  +  G+ +   + L        +              ++ 
Sbjct: 560 MFATDGKFYTLEASKLPGG--RGHGEPVRLHVDLPDDAAPIGLF------KYDPERTLLV 611

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   +  R +  D + + + GK  + L   DE   +      + + L  +  + + F +
Sbjct: 612 ASDGNSGFRIQEKDCLALKKGGKQILNLAEGDE-AFLCIPATGDRVALIGENKKLLVFEL 670

Query: 711 SAIRVFAGRNSV---GVRGISLAK 731
             I V +    V   G +G  LA 
Sbjct: 671 EEIPVMSRGKGVKLLGGKGAKLAD 694


>gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
 gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385]
 gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
          Length = 767

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/748 (30%), Positives = 358/748 (47%), Gaps = 76/748 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV  
Sbjct: 137 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLSDENEKRKLIVKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSSGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 ITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +++ A     G++ I L  G+ +   A+
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAV 716


>gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
 gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
          Length = 739

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 234/734 (31%), Positives = 375/734 (51%), Gaps = 59/734 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D     AA RYT
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L + +  LL +LG+ T D++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 126 EAKLSQYSEVLLSELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP++  + + E I  PD PT A +I     +    +TGRGS  +
Sbjct: 186 PHNLREVVKGTIALIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRGSYRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+T++PYQV+ + ++ +IA+ ++ K++  ++D+RDESD Q    
Sbjct: 246 RSVYRIE-----KNEIVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQNPTR 300

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VNM  +    +P+  ++  IL  ++  R+E
Sbjct: 301 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK   R H+L GL IA  N+DEV+RIIR    P   + ELM R       
Sbjct: 361 TVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIRIIREEEQP---KAELMSR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + ++Q  AILEL+L  L  L   ++R E   L  +    
Sbjct: 411 -------------------FNIDDIQAEAILELKLRHLARLEEMEMRREQEELEAKAALI 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L++   L  +I  EL     +    RR+ IV       M ++D +  + + V +S  
Sbjct: 452 REQLANPESLKALIINELKDDAKKYGDDRRSPIVHRAEATAMSEQDFMPADPVTVVLSEA 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R+ +        +  R  D         ++  V      G  Y   +  
Sbjct: 512 GWI--------RSAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDESGRSYALAINS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G+ L + LS   G     +    +DE+      V+  +  G   + +    
Sbjct: 564 LP--SARGLGEPLSSKLSPASGVGFKQVF-IADDETE-----VMALSSKGYGFKTQAKQL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK  + L  +  ++ + +  Q   + L T  G+ +   +S + V       G +
Sbjct: 616 DTNAKAGKAFLTLPEKATVMPLTSVDQATHLALLTSTGRLLILELSELPVL--NKGKGNK 673

Query: 726 GISLAKGDQVISMA 739
            I L + DQ++ M 
Sbjct: 674 LIQLEEKDQIVFMT 687



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 69/176 (39%), Gaps = 8/176 (4%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++   GDQ +S A        Y        +  A   L S            S   G   
Sbjct: 527 LNFRAGDQYLSHAQGKSNQRVYVLDESGRSYALAINSLPSARGLGEPLSSKLSPASGVGF 586

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           ++    +   E  ++ +S KG+G +T +     + ++GK           E   ++ +  
Sbjct: 587 KQVF--IADDETEVMALSSKGYGFKTQAKQLDTNAKAGKAFLTLP-----EKATVMPLTS 639

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           V+    + L++  G L+ + ++E+ + ++  KG  +    + +++V + R+   EI
Sbjct: 640 VDQATHLALLTSTGRLLILELSELPVLNKG-KGNKLIQLEEKDQIVFMTRLTLDEI 694


>gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399]
 gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013]
          Length = 767

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV  
Sbjct: 137 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 721


>gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 797

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 245/783 (31%), Positives = 375/783 (47%), Gaps = 82/783 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M             G T++++ D  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MDSQPPLDLGGPTDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSM 60

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ +         K VK AR+ G+V+G++HPH + A YDAL RMAQD+S R  L++G
Sbjct: 61  SRMGLGFGGTNGTVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL +    LLD++ + TVDF PNYDGS +EP +L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVIL 232
            L+NG  GIAVG+AT IP+HNL E+ D CVA+I +   +  + L  I+ GPD+P GA I+
Sbjct: 181 TLLNGASGIAVGLATEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQII 240

Query: 233 -GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            G + I +AY TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   K
Sbjct: 241 SGASDIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPK 300

Query: 292 RIVDIAD------------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYT 331
                                    +RDES +     ++        S +  +  L   T
Sbjct: 301 VKAGKKALSAEQTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQEEFITTLLAQT 360

Query: 332 SLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N+  +    KP + +L  +L  ++AFRE  V +R+++ LNK  +R H+L G 
Sbjct: 361 SLETSSPINLTMVGIDGKPTQKSLRQMLNEWIAFREITVEKRSRHRLNKVLERIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            + + N+DEV+ IIR + +P+ A   L+ R                            LS
Sbjct: 421 QLVLLNIDEVIAIIRAAEDPKAA---LIAR--------------------------FNLS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q   ILE+RL +L  L    I  EL  L  E K+  DIL S + L  ++ +E+ +   
Sbjct: 452 ERQAEDILEIRLRQLARLEAIKIEQELKGLREEQKKLEDILGSPATLRRLLIKEIEADAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
             + PRRT I      + +   +V E + V VS  G+V+             G       
Sbjct: 512 TFEDPRRTLIQAEKRAVAE-VKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGAAPEYS 570

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSS----LGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            +  D +   F   +  ++L F S       VY   V  LP    +  G+ +  ++ L+ 
Sbjct: 571 FKSGDTLYGAFECRSVDTLLVFGSSKDKSVRVYTVPVASLPGA--RGDGQPVTTLIELDA 628

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           G  +T     P   S      V+ A   G      + + +   R GK  + +   +++  
Sbjct: 629 GTHVTHFFAGPVGAS------VLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLCR 682

Query: 687 VETCTQEN---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
                  +          +   +  G+ + F I+ ++    +   G+  I L   D +  
Sbjct: 683 PSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLP-KGGRGLTLIDLEPKDTLAG 741

Query: 738 MAI 740
            A 
Sbjct: 742 AAA 744



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI----NEIGALVAVFPVNDNDQIIL 855
           +L  +  G+G   +  +     R GK        +     + +G      P+     +  
Sbjct: 644 VLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVAC 703

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            S  G ++   + E++   +  +G+ +      + +    
Sbjct: 704 ASTGGRILTFDIAELKSLPKGGRGLTLIDLEPKDTLAGAA 743


>gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 752

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 246/743 (33%), Positives = 382/743 (51%), Gaps = 60/743 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G   V++ + ++  YL YA++ I GRA+PD RDGLKPVHRRIL+GM  + ++    + KC
Sbjct: 16  GTDLVNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKC 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYTE R
Sbjct: 76  AKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEAR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL+ + +D +DFR NY G  +EP+VL A  PN+L NG  GIAVGMAT+IP HN
Sbjct: 136 MTEIARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           L E+ D  + +I + D   D L+  +RGPDFPTG +++     I   Y TGRG+  +R  
Sbjct: 196 LSELCDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRAR 255

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+ +     IVVTEIPY V K+ ++EK+AEL+ +K++  + D+RDES      V+  
Sbjct: 256 WEREEGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDESAEDVRIVIEP 315

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRR 372
             R    ++++  L++ T L++ F VNM  L     P   +L   L+ ++  R EV++RR
Sbjct: 316 KSRAVEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L +   R  VL G+ I   NLDEV+RIIR    P+   +                 
Sbjct: 376 SRHRLAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEPKEVLK----------------- 418

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T  LS++Q   IL+ RL  L  L   ++R E  +L  E  E   +L+
Sbjct: 419 ------------ATFTLSDIQANYILDTRLRSLRRLEEMELRREYENLEKEKSEIEGLLA 466

Query: 493 SRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDEDCIVR-EDMVVTVSH 544
           S S+    I  ++  +K           RRT    V  +  ++    ++  E + + VS 
Sbjct: 467 SESKQWKEISSQIRDLKKRYGEATPLGRRRTTFGNVPDVGAVDVATALIEREPVTIVVSE 526

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +      S +  + +D +   F   T + +L F+S G V+  +  
Sbjct: 527 KGWI--------RALKGHVADLSTLTFKGDDQLAFQFFAETTSKILLFASDGKVFTLEAS 578

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP G  +  G+ L  ++ L +GE +T+I+P+           ++     G        D
Sbjct: 579 KLPGG--RGHGEPLRLMVDLGEGEEVTSIIPY------ETGAKLLLTASDGRGFIVGQDD 630

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            I   R GK  +  D+  ++  +      + + +  +  + + FP+  I         GV
Sbjct: 631 LIGTTRKGKQVLNCDAPAKLSHIVPAAG-DHLAIIGENRKLLIFPLVQIAEMT--RGKGV 687

Query: 725 RGISLAKGDQVISMAIVLHADAD 747
           R      G   +S A V+  DA 
Sbjct: 688 RLQKYKDG--GVSDAKVIFIDAG 708


>gi|331678180|ref|ZP_08378855.1| DNA gyrase subunit A [Escherichia coli H591]
 gi|331074640|gb|EGI45960.1| DNA gyrase subunit A [Escherichia coli H591]
          Length = 542

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 210/576 (36%), Positives = 325/576 (56%), Gaps = 67/576 (11%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           MVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN+D +
Sbjct: 1   MVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPI 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEV 452
           + +IR +P P  A+  L+   W   ++  +++   D +             DG  YL+E 
Sbjct: 61  IELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 120

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V+++ 
Sbjct: 121 QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 180

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   ++
Sbjct: 181 GDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK 240

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           +EDF+  L + +TH  +L FSS G VY  KV++LP  +  ARG+ ++N+L L Q ERIT 
Sbjct: 241 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  E E       V  AT +G V++  L++F ++  +GK+A+KL   DE++ V+  + 
Sbjct: 301 ILPVTEFEEGVK---VFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 357

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E++++L +  G+ VRF  S++R     N+ GVRGI L +GD+V+S+ +     A      
Sbjct: 358 EDEVMLFSAEGKVVRFKESSVRAMG-CNTTGVRGIRLGEGDKVVSLIVPRGDGA------ 410

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                          ILT ++ G+GKRT
Sbjct: 411 -----------------------------------------------ILTATQNGYGKRT 423

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  ++   +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I
Sbjct: 424 AVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 481

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             R T+GV++  TA+DE VV ++R+ E    ++ ++
Sbjct: 482 VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDT 517



 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 105/269 (39%), Gaps = 26/269 (9%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T I+  + + E+         V   +  G VK+  L+ +   R  GK    + + D
Sbjct: 295 DERITAILP-VTEFEEGVK------VFMATANGTVKKTVLTEFNRLRTAGK--VAIKLVD 345

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERIT 631
            D +  + + S    V+ FS+ G V      R    S +A G     +  + L +G+++ 
Sbjct: 346 GDELIGVDLTSGEDEVMLFSAEGKVV-----RFKESSVRAMGCNTTGVRGIRLGEGDKVV 400

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVE 688
           +++    D +      ++ AT++G  +R  ++++   +R+ K  + +   +    ++   
Sbjct: 401 SLIVPRGDGA------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAV 454

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                + I++ T  G  VR  +S I +   RN+ GV  I  A+ + V+ +  V     + 
Sbjct: 455 QVDDCDQIMMITDAGTLVRTRVSEISIVG-RNTQGVILIRTAEDENVVGLQRVAEPVDEE 513

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKN 777
           D              +      +    + 
Sbjct: 514 DLDTIDGSAAEGDDEIAPEVDVDDEPEEE 542


>gi|301598495|pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
 gi|301598496|pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
          Length = 508

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/529 (44%), Positives = 330/529 (62%), Gaps = 32/529 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+  ++ I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+   
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAAE 502


>gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 825

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 270/764 (35%), Positives = 402/764 (52%), Gaps = 53/764 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE     I ++ +    Q+ YL Y+++VI  RA+PD+RDGLKPV RR+L+ M  + ++
Sbjct: 22  PFDESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLD 81

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            + K+ KCA++ G+VMGKYHPHG+++IY+AL RM+Q +SLR+ +I+G GNFGS+DGD  A
Sbjct: 82  SSAKHSKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAA 141

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECR+   A  +L DL   TV F+PNYDG+ +EPVVL +R P++LVNG  GIAVGM
Sbjct: 142 AMRYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGM 201

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--EIIRGPDFPTGAVILG-RTGIKNAYAT 243
           ATNIP HNL EV +  + ++ NP+I    L+  + I+GPDFPTG  I   +  ++  YAT
Sbjct: 202 ATNIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYAT 261

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G G+I +RGV+ + + S   + + +TEIP+ VNKAAM+E+IAELV   ++  + ++RD S
Sbjct: 262 GTGTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLS 321

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPERFTLIGI 357
             +  RV + LK+ A AD +L  LY++T LQ+ F+VN+  L          P+R  L  I
Sbjct: 322 T-EDIRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEI 380

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+ FR +V+  R    L     R H+L GLA+    LDE+++IIR S     A  ++
Sbjct: 381 LWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKI 440

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+R                +S          L   QT AILEL+L RL  L  + + +EL
Sbjct: 441 MKRFPVKELTPAQARRKTRASNG--------LDAEQTDAILELKLYRLARLEINVVLDEL 492

Query: 478 NSLGIEIKECLDILSSRSR------LLGIIKQELLSVKDELDTP----RRTRIV--EGLL 525
                 + E   +L+             IIK+EL S+  +        RR+ IV     +
Sbjct: 493 KKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEV 552

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +  +ED IV ED  V V+  G+VKR       ++ R         +R  D V      +T
Sbjct: 553 EYTEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKSR---------LRQGDAVLACVAGNT 603

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE------D 639
            T++ FFSSLG  Y  ++  +P       G+ +  +     GERI   +           
Sbjct: 604 RTTLAFFSSLGVCYTARMIDIPAS--TGFGEPIQKLFKFKDGERIIAALSMDPRILGDIS 661

Query: 640 ESSWNNLYV----VFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQEN 694
           E    N Y     + A+  G   R  L  F +   R+G+   ++     I+ V       
Sbjct: 662 EDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTE 721

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            +L  +   + +  P   I   +G    GV  + LA  D+++  
Sbjct: 722 TVLAVSADARAMVCPADEINYLSG-AGKGVLLLKLAASDKLLGF 764



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/471 (14%), Positives = 137/471 (29%), Gaps = 61/471 (12%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK---------QE 504
            + IL   L     +    + NEL +L   I     +      L  IIK           
Sbjct: 377 LKEILWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADA 436

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
              +         T                 +   +    L  + R+ ++V         
Sbjct: 437 AEKIMKRFPVKELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVL------- 489

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                  +  D +  L           ++S G       W +     Q+    + +  + 
Sbjct: 490 DELKKKRKRVDEINKLLA----DDRDDYTSSGR------WAIIKEELQSL---ISDYGNT 536

Query: 625 NQGERITTIMPFPEDESSWNNLYVV------FATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             G R +TI+   E+       ++V        T  G V+R K       +R       L
Sbjct: 537 PAGRRRSTIVVPTEEVEYTEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKSR-------L 589

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
              D +L+         +   + LG C    +  I    G      +      G+++I  
Sbjct: 590 RQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIPASTGFGEPIQKLFKFKDGERIIAA 649

Query: 737 -SMAIVLHADADYDERICY---------MKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            SM   +  D   D +  Y              A R  +    E  T      +     +
Sbjct: 650 LSMDPRILGDISEDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGA 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + +L VS         + +    + +GKG+    ++  ++   L+   P
Sbjct: 710 SIVDVVPIAGTETVLAVSADARAMVCPADEINYLSGAGKGVLLLKLAASDK---LLGFKP 766

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +  ++ +V+++G    V   + R  SR  +G       K+ ++  + R
Sbjct: 767 STGDRDLLNVVTNRGAKKTVSTAKYRTTSRGGRG---IELQKNGKIAEIVR 814


>gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153]
          Length = 777

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/748 (30%), Positives = 359/748 (47%), Gaps = 76/748 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 27  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 86

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 87  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 146

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 147 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 206

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 207 AAIALLKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 266

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 267 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 326

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 327 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 386

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 387 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 440

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 441 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 477

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 478 ELREEQGRLNILLSDENEKRKLIVKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 536

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 537 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRT 588

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 589 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSSGYGF 640

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 641 ITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 700

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +++ A     G++ I L  G+ +   A+
Sbjct: 701 LKIMA--KGKGLQIIGLNAGESMTHTAV 726


>gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568]
 gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196]
          Length = 765

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 361/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
 gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
          Length = 748

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 246/745 (33%), Positives = 389/745 (52%), Gaps = 64/745 (8%)

Query: 1   MTEHIISSDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M  ++I+ + E++ G    S  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MA-NLINKNNEDDGGGSTLSEPLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILY 59

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  N K++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+S+R  +++GQGNFG
Sbjct: 60  AMYRLKLVSNGKFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFG 119

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L  + ++ VDF+ NYDG   EP VL A +PN+L NG
Sbjct: 120 NIDGDNPAAARYTEARMTAVAEAMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMATNIP HN+GE++D  + +I  P+   + L++ + GPDFPTG +++  R  +
Sbjct: 180 STGIAVGMATNIPPHNIGELLDASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSL 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRG + +R    IE       QIVVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 240 LETYRTGRGPMRLRSKWEIEDLPRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILA 299

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIG 356
           D+RDES      V+    +     V++  L+R + L+  F++N+  L   + P+  ++  
Sbjct: 300 DVRDESAEDIRLVLEPRAKTVDPTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKE 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  + +V++RR+K+ ++K   R  VL G  +A  NLD V+ IIR    P+     
Sbjct: 360 VLRAFIDHKRDVLLRRSKHRMDKIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEPKKI--- 416

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+VQ  AIL +RL  L  L   ++R E
Sbjct: 417 --------------------------MMKEFSLSDVQVEAILNMRLRSLRKLEEIELRTE 450

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGL--LDMED 529
           L+SL +E  +  D+L+S       I  EL   +           RRT + E     ++  
Sbjct: 451 LDSLQLERADLDDLLASEKMQWERIINELRETRKVFGKNSDSGNRRTELAEAPDFEEVPI 510

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I +E + V  S +G+++ +   V  +Q         +  +D D    +F   T   +
Sbjct: 511 EAMIEKEPITVVCSSMGWLRAMKGHVDLSQE--------LKYKDGDEKRFVFHAETTDKL 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F   G  Y      LP G  +  G+ +  I+ L     +  +     D        ++
Sbjct: 563 LMFGGNGRFYTMSCSELPGG--RGMGEPIRLIVDLPNDANMVDLFIHQPDRK------LL 614

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVR 707
            A+  G+    + +D +   R+GK A+ +      ++   C     + +    +  + + 
Sbjct: 615 LASSAGDGFVVEENDIVAQTRTGKQALNVKGD---ITALICKPVVGDYVATVGQNRKVLI 671

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG 732
           FPI  + V +     GVR      G
Sbjct: 672 FPIDELPVMS--RGKGVRMQKYKDG 694


>gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 761

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/756 (31%), Positives = 377/756 (49%), Gaps = 72/756 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M       D      I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MATDTTEPDPF--DAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++  + + K AR+ G+V+GKYHPHG+A++YDA+ R+AQDW+LR  L+EGQGNFG++
Sbjct: 59  RQLKLDPAQAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  L+  L + TVDF P Y+G  +EP +    +PN+L NG  
Sbjct: 119 DGDNAAAYRYTEARLTKTAIQLMSGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP+HN+ E++D  + +IDNP  +   LME+  GPD PTG VI+     I N
Sbjct: 179 GIAVGMATNIPSHNVAEIIDATLLLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVISN 238

Query: 240 AYATGRGSIVIRGV-------------SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           AY TGRG+I +RG              S IEK  G + Q+VV+EIPY V K  ++E+IA+
Sbjct: 239 AYETGRGAIRVRGRFSTGRDEAGNWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIAQ 298

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L+ +K++  + D+RDESD Q   V+I   R    D++   LYR T L++ F +N+  L+ 
Sbjct: 299 LIADKKLPILEDIRDESDEQIRLVLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLDS 358

Query: 347 YKPE-RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            +      L  +L+ +V  + ++++RR+++ L+K   R  +L G  IA  NLD ++ IIR
Sbjct: 359 RRTPGVLGLKLVLQEWVISQIDILLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEIIR 418

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               P+                                     L++ Q  AIL +RL  L
Sbjct: 419 TEDEPKPV-----------------------------MMAEFELTDRQAEAILNMRLRSL 449

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI 520
             L   ++R E ++L  E +E   +L S +R    +K++L +++ +         RRT I
Sbjct: 450 RKLEEMELRKERDALLAEQEELQKLLDSPARQRTRLKRDLAALRKDYAEDTALGRRRTTI 509

Query: 521 VEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            E     +   +  I +E + V +S  G++        RA +           ++ D   
Sbjct: 510 AEAAPTREFSMDAMIEKEPVTVILSAKGWI--------RAAKGHVPLDGDFKFKEGDGPA 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   +L     G  Y     +LP    +  G+ +  ++ ++   +I +++P+  
Sbjct: 562 FALHCQTTDKLLVAVDNGRFYTLGADKLPGA--RGFGEPIRTMVDIDPDAQIVSVLPYK- 618

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDIL 697
                    ++ A   G     ++ + +   R G+  +      ++  V     + + + 
Sbjct: 619 -----PKGQLLLAANTGRGFAAEMDELLAETRKGRGVVSTKPGVKLAVVREIAPEHDHVA 673

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +  +  + V F +S + + A     GV       G+
Sbjct: 674 VIGENRKLVIFALSEVPLLA--KGQGVTLQRYKDGE 707


>gi|159037301|ref|YP_001536554.1| DNA topoisomerase IV subunit A [Salinispora arenicola CNS-205]
 gi|157916136|gb|ABV97563.1| DNA topoisomerase (ATP-hydrolyzing) [Salinispora arenicola CNS-205]
          Length = 827

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 274/839 (32%), Positives = 403/839 (48%), Gaps = 60/839 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S+ ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G 
Sbjct: 11  LSAFDQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGH 70

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR+ G+VMGKYHPH + AIYDAL R+AQD+SL   LI+G GNFGS D D P
Sbjct: 71  RPDRGHVKSARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNTPLIDGHGNFGSPD-DGP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ + A  L+ +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVG
Sbjct: 130 AAARYTEARMSREAMLLVGELGEDTVDLEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY TGR
Sbjct: 190 MATNMIPHNLGEVVTAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGR 249

Query: 246 GSIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKI-AELVREKRIVDIADLRDE 302
           G + +R    I    G   R+ I V E+PY +    ++  +  E+ + KR+  IAD++D 
Sbjct: 250 GVVRMRAKVEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDL 309

Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR+   R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F
Sbjct: 310 TDRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVF 369

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A R EVV RR+ Y   +  +R H++ GL +A+ ++D+VVR+IR S + + A+  LM+R 
Sbjct: 370 LAHRYEVVTRRSAYRRRRREERLHLVDGLLVALLDIDQVVRLIRGSEDAQAAKEGLMRR- 428

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQ   IL+  L RLT   R ++  E   L 
Sbjct: 429 -------------------------FGLSEVQATYILDTPLRRLTRYDRLELEAEQEKLR 463

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------- 534
            EI E   +L  R  L  ++  EL +V  +   PRRT +V+G L       +        
Sbjct: 464 SEIAELSRLLDDRKVLRKVVSNELAAVVKQSAAPRRTTLVDGDLKEVLAASVPSGPLEVA 523

Query: 535 REDMVVTVSHLGYVKRVPLSVYRA---QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +   V +S  G V R       A    RR G+ R        D V  +   +    VL 
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEAAEGSRRHGRVR-------HDAVRAVAHSTARGRVLL 576

Query: 592 FSSLGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNN 645
            +S G  +K  V  LP+   Q+       G ++  ++ L  GE +  I P     S+  +
Sbjct: 577 VTSGGRAFKVDVLPLPVLPEQSGTVSLRGGMSVAELVPLAPGETVVGIAPLGP--SAEGS 634

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQ 704
             +   T+ G V+         +       + L   DE++           +   T    
Sbjct: 635 PGLALGTRRGMVKVCAPEW--PVRADEFEVISLRDGDEVVGATWLTDGAESLTFVTSEAS 692

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R+    +R    R   GV G+ L+   +V+    V   D  + E +      +  +  
Sbjct: 693 LLRYSTGLVRPQGLRGG-GVAGVGLSGDARVVFFGAVRTDDPTHGEPMVVTSTGATVKVT 751

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                            +  +  E    +       +  +  G      + D R     
Sbjct: 752 PFAAYPAKGRATGGVRSQRFLKGETEVAVAWVGPRPVGATATGEPVELPAADPRRDGSG 810



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 90/271 (33%), Gaps = 28/271 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQI---NRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R             R G++       D + +V   T    +LL T
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEAAEGSRRHGRVR-----HDAVRAVAHSTARGRVLLVT 578

Query: 701 KLGQCVRFPI-------SAIRVFAGRNSVGVR-GISLAKGDQVISMAIVLHADADYDERI 752
             G+  +  +             + R  + V   + LA G+ V+ +A +  +        
Sbjct: 579 SGGRAFKVDVLPLPVLPEQSGTVSLRGGMSVAELVPLAPGETVVGIAPLGPSAEGSPGLA 638

Query: 753 CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +       A    +  D  E+ SL++   V G         L    + +  V+ +  
Sbjct: 639 LGTRRGMVKVCAPEWPVRADEFEVISLRDGDEVVG------ATWLTDGAESLTFVTSEAS 692

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKG-TLIRVP 866
             R S+   R     G G+    +S    +    AV   +    + ++V+  G T+   P
Sbjct: 693 LLRYSTGLVRPQGLRGGGVAGVGLSGDARVVFFGAVRTDDPTHGEPMVVTSTGATVKVTP 752

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                   RAT GV      K E  V+V  +
Sbjct: 753 FAAYPAKGRATGGVRSQRFLKGETEVAVAWV 783


>gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
 gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
          Length = 752

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 228/743 (30%), Positives = 357/743 (48%), Gaps = 76/743 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 2   LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGE 61

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 62  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 121

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 122 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 181

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 182 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 241

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 242 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 301

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 302 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 361

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 362 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 416 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 452

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 453 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTTADEPI 511

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 512 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 563

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 564 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGQPEQHYLLSGSGGYGF 615

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M +DS + +L             +  I+  T   + + FPI  
Sbjct: 616 ITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDCKIIAATNQNRAISFPIGE 675

Query: 713 IRVFAGRNSVGVRGISLAKGDQV 735
           +++       G++ I L  G+ +
Sbjct: 676 LKIMP--KGKGLQIIGLNAGESM 696


>gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 781

 Score =  477 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 257/756 (33%), Positives = 394/756 (52%), Gaps = 61/756 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWN 68
           E +E  I    I+ E +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M + + +  +
Sbjct: 3   ENQEDRIQFREISSETRRRYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEELRLMAD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K  KCA+ISG+  G YHPHGN ++YD L R+AQD++LR  L++GQGNFGS+ G P AAE
Sbjct: 63  AKTRKCAKISGDTTGNYHPHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGLPAAAE 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L+++L  DTV+ RPNYDG+ +EPVVL  R+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEARLTGIAEQLMNELRFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           N+P HNL EV++ C+ +I NP+     L++ I+GPDFP G  +I  R  +   Y  GRG+
Sbjct: 183 NMPPHNLKEVLEACIHLITNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYEEGRGA 242

Query: 248 IVIRGVSHI--EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESD 304
             +R    +  EK +   +++V+  +PY V    +L +I  ++  +++   I    +  D
Sbjct: 243 FKVRAEWRMDKEKRAEVEDRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAADETDD 302

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT-----LIGILK 359
           + G RVV+ELK+G+  + ++  LY+ T L+  F+ N   L        T     L  +L 
Sbjct: 303 KHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPLHRLLG 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+ FR +VV +R ++ L++ + R H+L GL I    +D+ ++IIR S     A  +LM 
Sbjct: 363 EFLKFRLKVVKKRFQFQLDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDACDKLMA 422

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E QT AILE++L R++ L  D +  ELN+
Sbjct: 423 --------------------------AFPLDEPQTMAILEMQLYRISQLEIDTVLAELNT 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVRED 537
              E      IL+   R+  +I+ EL  + ++    RRT +   + + + ++   IVRE+
Sbjct: 457 KQKEADRITRILAKDDRIWNVIEGELRELSEQFGDKRRTTLGSSDEVTEFDESHYIVREN 516

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G++KRV     R Q           +R+ D V D+   ST   V+FF+S G 
Sbjct: 517 TNVVLSKDGWIKRVG----RLQS-----VESTRVREGDQVLDVLPGSTVDHVIFFASDGI 567

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------EDESSWNNLY 647
            Y   + ++P+ S    G+ L        G ++   +              + +     +
Sbjct: 568 AYTMPISQVPVSS--GYGEPLTKHYKFKDGVQVIAAVTTDPRFTAVAEETAEGAEPAPPH 625

Query: 648 VVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +   T  G V R  L  F     RSG+   KL   D +  VE    +  + L T+  + +
Sbjct: 626 LFVTTAQGQVMRVPLQPFRTASTRSGRKFCKLQEGDVVAKVELIVDQTSVFLVTREARLI 685

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            F +  I V +G    GVRGI L + ++ + +   L
Sbjct: 686 HFSLEEIPVLSG-AGKGVRGIRLEEKEKDLVLGAAL 720



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/515 (13%), Positives = 149/515 (28%), Gaps = 93/515 (18%)

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +G  IA   L +++     + +    R  L  ++  +   +   +            + 
Sbjct: 280 EIGNVIASRKLPQLINAADETDDKHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNS 339

Query: 446 TMYLSEVQ---------TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           T+ + + Q            +L   L     + +   + +L+ L   I     IL     
Sbjct: 340 TVLIPDDQGLLTPARLPLHRLLGEFLKFRLKVVKKRFQFQLDQLQARI----HILRGLEI 395

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +   I + +  +++          +     +++   +   +M +       +  V   + 
Sbjct: 396 IFNGIDKAIKIIRNSNGKRDACDKLMAAFPLDEPQTMAILEMQLYRISQLEIDTVLAELN 455

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             Q+   +     ++  +D + ++           F                      G 
Sbjct: 456 TKQKEADR--ITRILAKDDRIWNVIEGELRELSEQFGDK--------------RRTTLG- 498

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
                   +  E    +  F E          V  +K G ++R      ++  R      
Sbjct: 499 --------SSDE----VTEFDESHYIVRENTNVVLSKDGWIKRVGRLQSVESTR------ 540

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +   D++L V   +  + ++     G     PIS + V +G      +      G QVI
Sbjct: 541 -VREGDQVLDVLPGSTVDHVIFFASDGIAYTMPISQVPVSSGYGEPLTKHYKFKDGVQVI 599

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +                                               ++EE  +  +  
Sbjct: 600 AAVTT-------------------------------------DPRFTAVAEETAEGAEPA 622

Query: 797 EQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +   + +G   R     FR  S RSG+        K+ E   +  V  + D   + L
Sbjct: 623 PPHLFVTTAQGQVMRVPLQPFRTASTRSGR-----KFCKLQEGDVVAKVELIVDQTSVFL 677

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           V+ +  LI   + EI + S A KGV      + E+
Sbjct: 678 VTREARLIHFSLEEIPVLSGAGKGVRGIRLEEKEK 712


>gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
 gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
          Length = 765

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV  
Sbjct: 135 LLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 719


>gi|124024717|ref|YP_001013833.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
 gi|123959785|gb|ABM74568.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 827

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 257/840 (30%), Positives = 436/840 (51%), Gaps = 68/840 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + Y 
Sbjct: 3   KERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  +++G GNFGS+D DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQIFNSRYPILDGHGNFGSIDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   ++  +  ++ K+TVDF PN+DGS QEP VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISNDAILSEIDKETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+  +A+I  P ++ + L+EII GPDFPTG  IL   GIK  Y  GRGSI +R
Sbjct: 183 PHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVSNGIKETYTKGRGSITMR 242

Query: 252 GVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++ IE+ +  + +     I+++E+PYQ+NKA  +EK+A+LV   +I  IAD+RDESDR 
Sbjct: 243 GIARIEEINPGKGKHKRSGIIISELPYQLNKAGWIEKLADLVNNGKISGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+++E+KR +    IL+ LY+ TSLQS F   ++AL   +P + TL  +L  F+ FRE
Sbjct: 303 GMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQLTLRKLLNNFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++ R+ YLL   ++R  ++  L  A  N+ +V+ +I  S +   A+  L+        
Sbjct: 363 NTILLRSNYLLKNIKNREEIVEALIQATNNVRKVIELIENSKDTPEAKSNLII------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              ++ ++E Q   IL + L ++TGL +D ++NEL  L  +  E
Sbjct: 416 -------------------SLKINERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAE 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR----------- 535
              I++ +  L+ ++ +EL  +K    + RRT+++EG   +  E    +           
Sbjct: 457 LELIINDKENLMKVMVKELKDLKKRFGSKRRTKLIEGGDALIAEKMANQRPNKELQRINA 516

Query: 536 -----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +D  + +     +K +P    +  +     +     +D      ++ +     +L
Sbjct: 517 LKELSKDSEIIIQSNNEIKIIPSLTIKKLKLKESDQER---KDILPAKLIWPIKNEPKIL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVV 649
             S  G +   K W      P      L   L    + ++I  ++P  E      ++ + 
Sbjct: 574 AVSQEGKIGLLK-WEFAGQKPG----PLKQFLPAGLENDKIINLIPLTE----IRDISIG 624

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G  +R  +++   I+      +KL    ++ S   C + + + + + +G+ ++  
Sbjct: 625 LISTDGKFKRISINEISDISNRSTTILKLKDSIKLKSCILCKENSYLYIVSDIGRIIKIK 684

Query: 710 ISAIR-VFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISG 767
           I+     F G+ + G   I L   + ++ +++     + D          +    + I+ 
Sbjct: 685 ITENDFPFMGKLAQGTNIIKLFPNENIVEALSFQEKKNKDLILITNKGSFVKHSTKEITI 744

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR-----TSSYDFRISNR 822
             +    +      +    +ER  +  +  + +   ++K   +R       +  +R  N+
Sbjct: 745 SKKGALGIMGIHFKDNKTIKERVIDCFINNKHVFIKTDKDRYQRLKTDQIDNSSYRKENK 804



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++++  I  +S  G  KR S  +   ISNR      +T + K+ +   L +     +N  
Sbjct: 617 EIRDISIGLISTDGKFKRISINEISDISNR------STTILKLKDSIKLKSCILCKENSY 670

Query: 853 IILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +VSD G +I++ +  N+     +  +G  I     +E +V     +E +  D
Sbjct: 671 LYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNENIVEALSFQEKKNKD 724


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 243/744 (32%), Positives = 377/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L  G  P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P+      M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWD-------------------------LTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +LSS  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPETDEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTAALTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  I+ ++  + + T                + 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIIVDMDNDQAVLTAFVHDPSRKQ------LI 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  GN      ++ +   R GK  M   L    ++L        + + +  +  + + F
Sbjct: 616 VSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLL---VPVSGDHVAVVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P++ +   +     GVR      G
Sbjct: 673 PLAQVPEMS--RGKGVRLQRYKDG 694


>gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
          Length = 767

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 231/753 (30%), Positives = 359/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV  
Sbjct: 137 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLSDENEKRKLIVKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSGSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 721


>gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 825

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 271/764 (35%), Positives = 400/764 (52%), Gaps = 53/764 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE     I ++ +    Q+ YL Y+++VI  RA+PD+RDGLKPV RRIL+ M Q  ++
Sbjct: 22  PFDESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTMSQQRLD 81

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
              K+ KCA++ G+VMG YHPHG+++IY+AL RM+Q +SLR+ +I+G GNFGS+DGD  A
Sbjct: 82  ATAKHRKCAKVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAA 141

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECR+   A  +L DL   TV F+PNYDG+ +EPVVL +R P++LVNG  GIAVGM
Sbjct: 142 AMRYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGM 201

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--EIIRGPDFPTGAVILG-RTGIKNAYAT 243
           ATNIP HNL EV +  + ++ NP+I    L+  + I+GPDFPTG  I   +  ++  YAT
Sbjct: 202 ATNIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYAT 261

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G G+I +RGV+ + + S   + + +TEIP+ VNKAAM+E+IAELV   ++  + ++RD S
Sbjct: 262 GTGTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLS 321

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPERFTLIGI 357
             +  RV + LK+ A AD +L  LY++T LQ+ F+VN+  L          P+R  L  I
Sbjct: 322 T-EDIRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEI 380

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+ FR +V+  R    L     R H+L GLA+    LDE+++IIR S     A  ++
Sbjct: 381 LWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKI 440

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+R                +S          L   QT AILEL+L RL  L  + + +EL
Sbjct: 441 MKRFPVKELTPAQARRKTRASNG--------LDAEQTDAILELKLYRLARLEINVVLDEL 492

Query: 478 NSLGIEIKECLDILSSRSR------LLGIIKQELLSVKDELDTP----RRTRIV--EGLL 525
                 + E   +L+             IIK+EL S+  +        RR+ IV     +
Sbjct: 493 KKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEV 552

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +  +ED IV ED  V V+  G+VKR       ++ R         +R  D V      +T
Sbjct: 553 EYTEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKSR---------LRQGDAVLACVAGNT 603

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE------D 639
            T++ FFSSLG  Y  ++  +P       G+ +  +     GERI   +           
Sbjct: 604 RTTLAFFSSLGVCYTARMIDIPAS--TGFGEPIQKLFKFKDGERIIAALSMDPRILGDIS 661

Query: 640 ESSWNNLYV----VFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQEN 694
           E    N Y     + A+  G   R  L  F +   R+G+   ++     I+ V       
Sbjct: 662 EDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTE 721

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            +L  +   + +  P   I   +G    GV  + LA  D+++  
Sbjct: 722 TVLAVSADARAMVCPADEINYLSG-AGKGVLLLKLAASDKLLGF 764



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/471 (14%), Positives = 137/471 (29%), Gaps = 61/471 (12%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK---------QE 504
            + IL   L     +    + NEL +L   I     +      L  IIK           
Sbjct: 377 LKEILWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADA 436

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
              +         T                 +   +    L  + R+ ++V         
Sbjct: 437 AEKIMKRFPVKELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVL------- 489

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                  +  D +  L           ++S G       W +     Q+    + +  + 
Sbjct: 490 DELKKKRKRVDEINKLLA----DDRDDYTSSGR------WAIIKEELQSL---ISDYGNT 536

Query: 625 NQGERITTIMPFPEDESSWNNLYVV------FATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             G R +TI+   E+       ++V        T  G V+R K       +R       L
Sbjct: 537 PAGRRRSTIVVPTEEVEYTEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKSR-------L 589

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
              D +L+         +   + LG C    +  I    G      +      G+++I  
Sbjct: 590 RQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIPASTGFGEPIQKLFKFKDGERIIAA 649

Query: 737 -SMAIVLHADADYDERICY---------MKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            SM   +  D   D +  Y              A R  +    E  T      +     +
Sbjct: 650 LSMDPRILGDISEDPKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGA 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + +L VS         + +    + +GKG+    ++  ++   L+   P
Sbjct: 710 SIVDVVPIAGTETVLAVSADARAMVCPADEINYLSGAGKGVLLLKLAASDK---LLGFKP 766

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +  ++ +V+++G    V   + R  SR  +G       K+ ++  + R
Sbjct: 767 STGDRDLLNVVTNRGAKKTVSTAKYRTTSRGGRG---IELQKNGKIAEIVR 814


>gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
 gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
          Length = 756

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/796 (29%), Positives = 401/796 (50%), Gaps = 62/796 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+    K+ K
Sbjct: 10  QGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAMSELGLSALSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL ++ + T D++PN+DG+ QEP +L AR P++L+NG  GIAVGMAT++P 
Sbjct: 130 SRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNGITGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV + C+ +ID+P   L  ++E ++GPD+PT A +I  R  IK  Y +GRGS   R
Sbjct: 190 HNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEIKRIYTSGRGSFKSR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V H+E+       IV++ +P++V+   +L+ IA+ + +K++  +ADLRDESDR      
Sbjct: 250 AVYHMEEGD-----IVISALPHRVSGGKILKDIAKQMIDKKLPMVADLRDESDRNHPTRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V++   +    + +++ L+  T L+    VN+  +    +P+   L+ IL  ++ +R+  
Sbjct: 305 VIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDKRPQVKGLLKILNEWLVYRKRT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+K   R H+L GL IA  N+DEV+ IIR   +    + EL+ R        
Sbjct: 365 VRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIRNYDDS---KAELITR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AILE++L +L  L    IR+E++ L  E  + L
Sbjct: 414 ------------------FDLSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDKLL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            +L+S  R   ++K+E+ +        RR+ +VE      + +++ +  E + V +S  G
Sbjct: 456 LLLNSERRFNTLLKKEIKADALNYGDARRSPLVERLEAKALTEKELLPNEQISVILSRQG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +++        AQ         +  +  D         ++ S +F  + G  Y      L
Sbjct: 516 WIRSAKGHDVDAQ--------ALNYKTGDEFLISAQGCSNQSAIFIDASGRAYSLDAHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +++G+ L      NQ E+   +     D    +N   + ++ HG     K SD  
Sbjct: 568 P--SARSQGEPLTGR--FNQNEQCAFVSVLLGD----DNDQYIISSDHGYGFIAKFSDIN 619

Query: 667 QINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG---RNS 721
             N++GK  + L     +L V+      ++  L  +  G+ + FP++++   +       
Sbjct: 620 SRNKNGKALINLSENAYLLPVQKLSNNADDLCLTISNEGRMLIFPVNSLPNLSRGKGNKM 679

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           + + G    K ++ ++M  ++  +          K       L++   E           
Sbjct: 680 INIMGAKATKREEFVTMLRIIPKEGSVTLHAGKRKLTLKASDLVAYQGERGRRGGKLPRG 739

Query: 782 EGNISEERCQELKLKE 797
              +      ++  +E
Sbjct: 740 LQRVDNIDVIKMSEEE 755



 Score = 38.8 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 108/308 (35%), Gaps = 28/308 (9%)

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN---VRRNK 661
           R  +   QA     I +  L + E I       +  +  + L ++  ++      +++  
Sbjct: 413 RFDLSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDKLLLLLNSERRFNTLLKKEI 472

Query: 662 LSDFIQI--NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +D +     R   +  +L+++  +   E    E   ++ ++ G         +   A  
Sbjct: 473 KADALNYGDARRSPLVERLEAKA-LTEKELLPNEQISVILSRQGWIRSAKGHDVDAQALN 531

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-RLISGDTEEITSLKND 778
              G         + +IS     +  A + +       + A          E +T   N 
Sbjct: 532 YKTG--------DEFLISAQGCSNQSAIFIDASGRAYSLDAHSLPSARSQGEPLTGRFNQ 583

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +     +S      L       +  S+ G+G      D    N++GK +   ++S+ N  
Sbjct: 584 NEQCAFVS----VLLGDDNDQYIISSDHGYGFIAKFSDINSRNKNGKAL--INLSE-NAY 636

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              V     N +D  + +S++G ++  PVN +   SR  KG  + +       K E  V+
Sbjct: 637 LLPVQKLSNNADDLCLTISNEGRMLIFPVNSLPNLSRG-KGNKMINIMGAKATKREEFVT 695

Query: 894 VERIRESE 901
           + RI   E
Sbjct: 696 MLRIIPKE 703


>gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra
 gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra
          Length = 500

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 243/491 (49%), Positives = 343/491 (69%), Gaps = 9/491 (1%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 2   RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH +L DL K+TVDF PNYDG
Sbjct: 62  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +   P V+  R PN+LVNG  GIAVGMATNIP HNL EV++ C+A+IDN ++  + ++E 
Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKA 278
           I GPDFPT  +I GR GI+ AY TGRG I IR  + I+   +  +E I+V E+PYQVNKA
Sbjct: 182 IPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNKA 241

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EK+AELV++KR+  I+ LRDESD+ G R+VIE+KRG   +V+LN LY+ T +Q  F 
Sbjct: 242 RLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFG 301

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           +NMVAL   +P+ F +  +L+AFV  R EVV RRT + L KARDRAH+L GL+IA+AN+D
Sbjct: 302 LNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANID 361

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLS 450
            ++ +I+ S N + +  +L+ + W   ++ +++    + +             DG  YL+
Sbjct: 362 PIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYYLT 421

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
             Q +AI++L+L +L+G+  D I +E  +L   I E + IL++ +RL+ +I +EL++++D
Sbjct: 422 AEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRD 481

Query: 511 ELDTPRRTRIV 521
           E    RRT I 
Sbjct: 482 EFGDERRTEIT 492


>gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 767

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLSDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTTADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTTDSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 721


>gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
 gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
          Length = 750

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 259/799 (32%), Positives = 399/799 (49%), Gaps = 76/799 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +       E  I  V + + ++  YL YA++ I+GRA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKPVDPPSGGGE--IQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++  + Y KCARI G+VMG++HPHG+AAIYDAL R+AQD+S+R  L++GQGNFG+V
Sbjct: 59  RVLRLDPGQAYKKCARIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL  + ++ VDFRP Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDSAAAMRYTEARMTEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMATNIP HN  E+ D  + +I+NPD  +D L+  I GPDFPTG VI+  R  I+ 
Sbjct: 179 GIAVGMATNIPPHNAAELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E  +  +  +VV EIPYQV K+ ++EKIAEL++ +++  +AD+
Sbjct: 239 AYETGRGSFRVRARWEREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    +    ++++  L+R T L+S   +NM  L+G K P+  +L  +L
Sbjct: 299 RDESAEDIRIVLEPKSKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A + EV+ RR ++ L +   R  +L G  I   N+D+V+RIIR    P   ++ELM
Sbjct: 359 AEWLAHQREVLERRARHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEP---KQELM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             LS+VQ  A+L +RL  L  L   ++R E +
Sbjct: 416 R--------------------------FFTLSDVQAEAVLNMRLRSLRKLEEFELRREFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL-DMEDEDC 532
            L +E  E   +L S  +    + +E+ +V++          RRTR  +    D+ D   
Sbjct: 450 QLTVEKAEKEALLGSTEKQWSAVAEEVRAVRETFSKKTKLGKRRTRFADAPDHDIGDITT 509

Query: 533 --IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV----VMRDEDFVTDLFIVSTH 586
             I +E + + +S  G++            RG KG          R+ D +   F   T 
Sbjct: 510 ALIEKESVTIVLSKKGFL------------RGMKGHLADFSNLTFREGDGLNIAFHAMTT 557

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +LF S  G V+  +  +LP G  + +G  +     L   + I          ++    
Sbjct: 558 DKLLFVSKHGRVFTMQADKLPGG--RGQGDPIRLAFDLEDKDDIAAAF------TAEPER 609

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
             +  +  G        D I   R GK  M +     +   +   + + + +  +  + +
Sbjct: 610 RRLMVSSEGTGFVATEGDMISGTRKGKQLMNVGKGSVVELAQEIGEGDTVAIVGENRKLL 669

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            FP+S +   A     GVR      G           +DA   +    +    +  R   
Sbjct: 670 VFPLSQVPQMA--RGKGVRLQRYKDG---------GVSDAKVFKLSEGLTWSDSAGRAFL 718

Query: 767 GDTEEITSLKNDSSVEGNI 785
              EE+   K D +  G +
Sbjct: 719 RSDEELMEWKGDRAQAGRL 737


>gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710]
 gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304]
 gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579]
          Length = 765

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 361/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB80_02D08]
          Length = 752

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 245/794 (30%), Positives = 413/794 (52%), Gaps = 60/794 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++ I S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   K
Sbjct: 2   KEQEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSK 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG+ A Y+A+  MAQ++S +  L++GQGN+GS D     AA R
Sbjct: 62  YKKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K A+ L+ +L   TVD++PN+DGS  EPV+  ++ P++L+NG  GIAVGMAT+
Sbjct: 122 YTESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSI 248
           IP+HN+ EV+D  V +++NP  +L  L++I++GPDF     +I+    ++  Y+TGRG  
Sbjct: 182 IPSHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGGF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             +          D+ QI++  +PYQ + + +LE+IA+ + +K+I  + DL DE D  + 
Sbjct: 242 KAQAFWQ-----QDKNQIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKEP 296

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+VI LK    +A+ ++N L+  T LQ  + VNM  ++    P+ F+LI +LK ++ FR
Sbjct: 297 VRLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLIDLLKEWLVFR 356

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +  V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+              
Sbjct: 357 KNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK------------- 403

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS++Q  AILE+RL +L  L +  +  E ++L  E  
Sbjct: 404 ----------------DIIKAFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLLAEQT 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   ILSS++RL  +IK ELL +K+     R++ I E  G     +E+ +V E + V +S
Sbjct: 448 DIEKILSSKTRLKTLIKNELLEIKEVFGEERKSPIKELSGAKVFSEEETLVTEPVTVVLS 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+ +      S +  R ED + D     ++   +F  S G  Y    
Sbjct: 508 AAGWI--------RSAKGHDIDPSSLSYRGEDTLQDFRRGKSNQVSVFLDSNGKAYSLPT 559

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP  S +  G  +   +S + G +  + +   +D     + +++  T  G    ++  
Sbjct: 560 HSLP--SARGMGDPISGRVSADSGVKFISTLIGNDD-----DKFMIMNTA-GYGYISEFK 611

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + I   +SGK  MK+    E+L       ++  I   + +G+ + F I  + V       
Sbjct: 612 NMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIGRLLIFNIDELPVLG--KGK 669

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G + I++     +    ++ HA    +     ++       L   D E   S +      
Sbjct: 670 GNKIINIPTAKFIAKEELMTHAQLLSEASSLRIESGKRFLTLKLKDLENYISTRAKRGNM 729

Query: 783 GNISEERCQELKLK 796
                 +  ++  +
Sbjct: 730 LPQGYRKVDQMIEE 743


>gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640]
 gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06]
          Length = 765

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 233/773 (30%), Positives = 366/773 (47%), Gaps = 82/773 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M  H   +D        ++ +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MQAHAPHTDSN------TLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 55  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 115 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 175 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K        
Sbjct: 235 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 294

Query: 296 --------------IADLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSV 339
                         I  +RDESD +    ++   +      D  +N L   TSL+   S+
Sbjct: 295 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 354

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 355 NLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 414

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 415 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 445

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 446 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIVKEMQADMKQYGDARRT 505

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +VE             E + + +S  G++        R++       S    ++ D + 
Sbjct: 506 -LVEEAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 556

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G  +  G  + +++ L  G +   ++    
Sbjct: 557 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGG--RGDGVPISSLIELQNGAKPVAML---- 610

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------Q 692
             +     + + ++  G     KL D +   ++GK+ M  DS + +L             
Sbjct: 611 --TGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINP 668

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +  I+  T   + + FPI  +++ A     G++ I L  G+ +   A+    +
Sbjct: 669 DCKIIAATSQNRALAFPIGELKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 719


>gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510]
 gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510]
          Length = 741

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 250/772 (32%), Positives = 395/772 (51%), Gaps = 56/772 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            +     I    + D +   YL+YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ +E  
Sbjct: 3   PQNPASEILEKPLADALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLRLEPT 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
               K AR+ G+V+GK+HPHG++++YDAL R+AQD+S+R  L++GQGNFG++DGD  AA 
Sbjct: 63  TPPKKSARVVGDVIGKFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDNAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + A  LL+ + +D VDFRP YDG  +EP VL A +PN+L NG  GIAVGMAT
Sbjct: 123 RYTEARLTEVAKALLEGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
           NIP HN+GE+ D    +I + D  ++ L+  + GPDFPTG V++  R  +  AY TGRG+
Sbjct: 183 NIPPHNVGEICDALRHLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRTGRGA 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R    +EK +    QIVVTE+PYQV KA ++EKIAEL+  K+++ + D+RDES    
Sbjct: 243 FRLRARWEVEKLAQGTWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDESAEDV 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
             V++   R    +V++  L++ T L+  FS+NM  L   + P    L  +L+AF+  R 
Sbjct: 303 RLVLVPKSRNVDPEVLMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFLDHRH 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRR+ + L +   R  VL G   A  NLDEV+RIIR    P   ++EL++       
Sbjct: 363 EVLVRRSNHRLTQIDHRLEVLGGYLAAYLNLDEVIRIIREEDEP---KQELIR------- 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ  AIL +RL  L  L   +IR E  +L  E   
Sbjct: 413 -------------------AFTLTDVQADAILNMRLRNLRKLEEMEIRREHEALTGEKNG 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVE--GLLDMEDEDCIVREDMVV 540
            L++L   +     I + +  +K +  T     RRT + +   ++++  +  + RE + V
Sbjct: 454 LLELLGDEALRWKRIAEGVAEIKKKFGTGALGKRRTDVADAPAVIEVPLDALVEREPVTV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S  G+++ V   +  A+    K       +D D    +    T   +L F+S G  + 
Sbjct: 514 ICSAKGWIRTVRGHLTDAEAEDVK------YKDGDERGFVERCETTDKLLVFASNGKFFT 567

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V +LP G  +  G+ +  ++ L     I  +              ++  ++ G   R 
Sbjct: 568 IGVDKLPRG--RGFGEPVRLMIDLGNDVDIVDLFR------HQPGRTLLVVSEDGRGFRV 619

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAG 718
           + ++ +   RSGK  + L+      S   C     + + +     + + FP+  + V   
Sbjct: 620 EEAEVLAQTRSGKQVLNLEDG---KSARICQPVSGDTVAIIGNNRKMLVFPLDQVPVMTR 676

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              V ++    A    V +  +         ER   +  ++      +G  +
Sbjct: 677 GKGVQLQKYKDASVADVKTFTLAEGLSWKNGERNFNVTDLTGWMGDRAGQGK 728



 Score = 44.1 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 74/263 (28%), Gaps = 65/263 (24%)

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            ++  P D         V  +  G +R  +      +  +    +K    DE   VE C 
Sbjct: 496 AVIEVPLDALVEREPVTVICSAKGWIRTVRG----HLTDAEAEDVKYKDGDERGFVERCE 551

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             + +L+    G+     +             VR +     D  I               
Sbjct: 552 TTDKLLVFASNGKFFTIGV-DKLPRGRGFGEPVRLMIDLGNDVDIVDLF----------- 599

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                         + +L VSE G G R
Sbjct: 600 -----------------------------------------RHQPGRTLLVVSEDGRGFR 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
               +     RSGK +   +  K   I   V+       D + ++ +   ++  P++++ 
Sbjct: 619 VEEAEVLAQTRSGKQVLNLEDGKSARICQPVS------GDTVAIIGNNRKMLVFPLDQVP 672

Query: 872 IASRATKGVVIFSTAKDERVVSV 894
           + +R  KGV +    KD  V  V
Sbjct: 673 VMTRG-KGVQLQK-YKDASVADV 693


>gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
 gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
          Length = 780

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/748 (30%), Positives = 359/748 (47%), Gaps = 76/748 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 30  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 90  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 149

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 150 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 209

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+G + +R    IEK 
Sbjct: 210 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGRVRVRARYEIEKL 269

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 270 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 329

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 330 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 389

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T      
Sbjct: 390 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT------ 443

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 444 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 481 ELREEQGRLNILLSDENEKRKLIVKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 539

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 540 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTILPVVILDSSGRT 591

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 592 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 643

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 644 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 703

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +++ A     G++ I L  G+ +   A+
Sbjct: 704 LKIMA--KGKGLQIIGLNAGESMTHTAV 729


>gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
 gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
          Length = 796

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 238/762 (31%), Positives = 369/762 (48%), Gaps = 82/762 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK-------KY 71
           +++    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +         K 
Sbjct: 24  LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK ARI G+V+G++HPHG++++YDA  RMAQD+S R  LI+G GNFGS DGD  AA RYT
Sbjct: 84  VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    LLD++ + TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP
Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVI 250
           +HNL EV D C+A+I +P +    L  +I GPD+P G  I+     I  AY +GRGS+  
Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------ 298
           R    IE  +  + ++V+TE+P  V+   +LE+I EL   K                   
Sbjct: 264 RARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATL 323

Query: 299 ------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKP 349
                 +RDES +     ++        S   ++  L  +TSL++   +N+  +    +P
Sbjct: 324 LSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGRP 383

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            + +L  +L  ++AFR++ + RR+++ L K  DR H+L G A+ + N+DEV+ IIR +  
Sbjct: 384 TQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADE 443

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           P+ A   L+ R                           +LS+ Q   ILE+RL +L  L 
Sbjct: 444 PKAA---LIAR--------------------------FHLSDRQAEDILEIRLRQLARLE 474

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
              I  EL  L  E ++  +IL S S L  ++ +E+ +       PRRT I      + +
Sbjct: 475 AIKIEQELAGLRGEQQKLEEILGSPSALRRLMIKEIEADAKTFADPRRTLIQAEKKAVLE 534

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR--SGVVMRDEDFVTDLFIVSTHT 587
              +      V VS  G+V+        A  R   G   +    +  D + D F   T  
Sbjct: 535 VKVVDEPVT-VVVSQKGWVRAQKGW---ASERAANGVLPAEYSFKAGDALYDTFECRTVD 590

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L F S G VY   V  LP    +  G+ + ++L L  G ++      P          
Sbjct: 591 TLLAFGSNGRVYSVAVALLPGA--RGDGQPMTSLLELEAGTQLLYYFAGPA------PAT 642

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---------DILL 698
           ++ ++  G      + +     ++GK  +  ++ + +         +          +  
Sbjct: 643 LLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSPVAGGSGATPWPAATHVAC 702

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            +  G+ + F IS ++  A     G+  I L   D++     
Sbjct: 703 ASAGGRILTFEISQLKTMAT-GGRGLMLIDLEDKDRLAGACA 743


>gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
 gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
          Length = 765

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV  
Sbjct: 135 LLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + +   G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPISSLIELQNGAKPVAML------TGLPEQHYLLSGSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRAIAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 719


>gi|72383169|ref|YP_292524.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
 gi|72003019|gb|AAZ58821.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
          Length = 827

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 256/840 (30%), Positives = 435/840 (51%), Gaps = 68/840 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + Y 
Sbjct: 3   KERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  +++G GNFGS+D DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQVFNSRYPILDGHGNFGSIDDDPPAAMRYTE 122

Query: 133 CRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   ++  +  ++ ++TVDF PN+DGS QEP VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISNDAILSEIDQETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+  +A+I  P ++ + L+EII GPDFPTG  IL   GIK  Y  GRGSI +R
Sbjct: 183 PHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVSNGIKETYTKGRGSITMR 242

Query: 252 GVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++ IE+ +  + +     I+++E+PYQ+NKA+ +EK+A+LV   +I  IAD+RDESDR 
Sbjct: 243 GIARIEEINPGKGKHKRSGIIISELPYQLNKASWIEKLADLVNNGKISGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+++E+KR +    IL+ LY+ TSLQS F   ++AL   +P + TL  +L  F+ FRE
Sbjct: 303 GMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQLTLKKLLNNFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++ R+ YLL   ++R  ++  L  A  N+ +V+ +I  S +   A+  L+        
Sbjct: 363 NTILLRSNYLLKNIKNREEIVDALIQATNNVKKVIDLIEKSKDTPEAKSNLII------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              ++ ++E Q   IL + L ++TGL +D ++NEL  L  +  E
Sbjct: 416 -------------------SLKINERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAE 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR----------- 535
              I++ +  L+ ++ +EL  +K    + RRT+++EG   +  E    +           
Sbjct: 457 LELIINDKENLMKVMVKELKDLKKRFGSKRRTKLIEGGDALIAEKMANQRPNKELQRINA 516

Query: 536 -----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +D  + +     +K +P    +  +           +D      ++ +     +L
Sbjct: 517 LKELSKDSEIIIQSNNEIKIIPSLTIKKLKLK---EINQERKDILPAKLIWPIKNEPKIL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVV 649
             S  G +   K W      P      L   L    + ++I  ++P  E      ++ + 
Sbjct: 574 AVSQEGKIGLLK-WEFAGQKPG----PLKQFLPAGLENDKIINLIPLTE----IRDISIG 624

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G  +R  +++   I+      +KL    ++ S   C + + + + + +G+ ++  
Sbjct: 625 LISTDGKFKRISINEISDISNRSTTILKLKDSVKLKSCILCKENSYLYIVSDIGRIIKIK 684

Query: 710 ISAIR-VFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISG 767
           I+     F G+ + G   I L   + ++ +++     + D          +    + I+ 
Sbjct: 685 ITENDFPFMGKLAQGTNIIKLFPNENIVEALSFQEKKNKDLILITNKGFFVKHSTKEITI 744

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR-----TSSYDFRISNR 822
             +           +    +ER  +  +  + +   ++K   +R       +  +R  N+
Sbjct: 745 SKKGALGTMGIHFKDNKTIKERVIDCFINNKHVYVKTDKDRYQRLKTDQIDNSSYRKENK 804



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 9/114 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++++  I  +S  G  KR S  +   ISNR      +T + K+ +   L +     +N  
Sbjct: 617 EIRDISIGLISTDGKFKRISINEISDISNR------STTILKLKDSVKLKSCILCKENSY 670

Query: 853 IILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +VSD G +I++ +  N+     +  +G  I     +E +V     +E +  D
Sbjct: 671 LYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNENIVEALSFQEKKNKD 724


>gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 770

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 235/756 (31%), Positives = 374/756 (49%), Gaps = 66/756 (8%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M     + DE +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ 
Sbjct: 1   MASDTPTRDEPDPFDAIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q+ ++    + K AR+ G+V+GKYHPHG+A++YDA+ R+AQD++LR  L+EGQGNFG+
Sbjct: 61  MRQLRLDPTGAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE RL   A  L+  L + TVDF P Y+G   EP +    +PN+L NG 
Sbjct: 121 IDGDNAAAYRYTEARLTATAARLMAGLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP+HN+ E+VD  + +IDNP ++   LM +  GPDFPTG V++     I 
Sbjct: 181 TGIAVGMATSIPSHNVAEIVDATLMLIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAIS 240

Query: 239 NAYATGRGSIVIRGV-------------SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           +AY  G+G+I +RG              S IEK    + Q+V++EIPY V K  ++E+IA
Sbjct: 241 SAYEVGKGAIRVRGRFSTGRDEAGEWEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIA 300

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
            L+ +K++  + D+RDESD     V++   R    D++   LYR T L+S FS+N+  L+
Sbjct: 301 ALIADKKLPILEDVRDESDEHIRIVLVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLD 360

Query: 346 GYKPE-RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             +      L  IL+ +V  + +++VRR+++ L+K   R  +L G  IA  NLD ++ II
Sbjct: 361 ARRTPGVLGLKQILQEWVIAQIDILVRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEII 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R    P+                                     L++ Q  AIL +RL  
Sbjct: 421 RTEDEPKPV-----------------------------MMAEFGLTDRQAEAILNMRLRS 451

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTR 519
           L  L   ++R E ++L  E  E   +L + +R    +K++L +++ E         RRT 
Sbjct: 452 LRKLEEMELRRERDALLAEQDELTKLLENPARQRTRLKRDLAALRKEYGPDTALGRRRTT 511

Query: 520 IVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           I E     +   +  I +E + V +S  G+++     V       GKG      ++ D  
Sbjct: 512 IAEAAPTREFSMDAMIEKEPVTVILSQRGWIRAAKGHVPL--GTDGKGED-FKFKEGDGP 568

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   +L     G  Y     +LP    +  G+ +  +L ++   ++  I P+ 
Sbjct: 569 AFAFHAQTTDKLLIAIDNGRFYTLGADKLPGA--RGFGEPIRTVLDIDPNGQVVAIFPWR 626

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDI 696
                 +   ++ A  +G     ++ + +   R G+  +       +  V     + + +
Sbjct: 627 ------HGGQLLLAANNGRGFVAEMDELLAETRKGRGVVSTKPGVHLAVVREIAPEHDHV 680

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +  +  + V F +S + V       GV       G
Sbjct: 681 AVVGENRKLVIFALSEMPVLG--KGQGVTLQRYKDG 714


>gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
 gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
          Length = 751

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/733 (32%), Positives = 379/733 (51%), Gaps = 63/733 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S ++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K A
Sbjct: 9   VESQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFKKSA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D     AA RYTE R
Sbjct: 69  RTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESR 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSKYAQILLAELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           + E+    + +ID P+  LD L+E ++GPDFPT A +I  R  IK  Y TGRGSI +R +
Sbjct: 189 VQEIAQALIQLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRGSIRMRAI 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VV 311
            + E+ +     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDES+ +     V+
Sbjct: 249 WNKEEAN-----VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHENPTRLVI 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           I        D +++ L+  T L+  + +NM  +    +P    L+ IL  ++ +R + V 
Sbjct: 304 IPRSNRIDLDQVMSHLFATTDLEKSYRINMNMIGLDNRPSVKGLLTILSEWLVYRCDTVR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L+  + R H+L GL  A  N+D+V+ IIR   + ++                  
Sbjct: 364 RRLNYRLDNVQRRLHILEGLLTAFLNIDKVIDIIRTEDDAKSV----------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE QT AILEL+L +L  L    +R+E      E+ +   +
Sbjct: 407 ------------LITCFSLSESQTEAILELKLRQLAKLEEKKLRSEEAEFQQELAQLQML 454

Query: 491 LSSRSRLLGIIKQELLSV----KDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSH 544
           L S++    ++K+E+ +       + +  RR+ ++  +    M + D    E + V +S 
Sbjct: 455 LESKAAFNQLLKKEIQADTAVCHHQQNHCRRSPLIQRDDAKAMNEHDIQPSEPVTVVLSK 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G+V        R+ +      SG   +  D         ++   +F  S G  Y     
Sbjct: 515 MGWV--------RSAKGHDVDPSGFNYKAGDCFRTAAQGKSNQPAVFIDSTGRSYSLDPL 566

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S + +G+ L      +    I  ++    D+       ++ ++  G       SD
Sbjct: 567 TLP--SARGQGEPLTGRFISSTEAVIEYVLMADNDQQ------LLLSSDAGYGFICHFSD 618

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            I  NR+GK  M L S  +IL        +D+LL+   G+ + FP + +         G 
Sbjct: 619 LITKNRAGKALMALPSNAKILPPLKLHGADDMLLSITAGRILMFPAADLPRLT--KGKGN 676

Query: 725 RGISLAKGDQVIS 737
           + IS++K +++  
Sbjct: 677 KIISISKQERMAG 689


>gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330]
 gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365]
 gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445]
 gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457]
 gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330]
 gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365]
 gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445]
 gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457]
 gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28]
 gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90]
          Length = 770

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 247/750 (32%), Positives = 382/750 (50%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGQSLLPP-SGGDDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  
Sbjct: 120 DGDNAAAYRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL 232
           GIAVGMAT+IP HN  E+ D  + +I +PD  L+AL+          I GPDFPTG VI+
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIV 239

Query: 233 -GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             RT +  +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +
Sbjct: 240 ESRTSMMESYRTGRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIAR 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           ++  + D+RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P 
Sbjct: 300 KLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++A R EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P
Sbjct: 360 VMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEP 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                  +I+                L++VQ  AIL +RL  L  L  
Sbjct: 420 KAV----------------MIER-------------FGLTDVQAEAILNMRLRSLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---E 522
            +IR E ++L  E  E   +L+S  +    +  E+  VK +         RR+      E
Sbjct: 451 FEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKKFAKATELGKRRSTFADAPE 510

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
             ++   +  I +E + V +S  G++        RA +      + +  +D D +   F 
Sbjct: 511 ADVEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTTSLQFKDGDALKVSFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F++ G VY     +LP G  +  G+ L  ++ +   + + T          
Sbjct: 563 AQTTDKILIFTTGGKVYTLGSDKLPGG--RGHGEPLRIMVDMENDQDVLTAFV------H 614

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                +V ++  GN      SD +   R GK  M +   DE   V      + + +  + 
Sbjct: 615 DPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKG-DHLAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + + FP++ +   A     GVR      G
Sbjct: 674 RKMLVFPLAQVPEMA--RGKGVRLQRYKDG 701


>gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
          Length = 731

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 239/780 (30%), Positives = 389/780 (49%), Gaps = 61/780 (7%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVD 152
           Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL +LG+ TVD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+    + +++NPD  
Sbjct: 121 YQPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDTS 180

Query: 213 LDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +D +++I++ PDFPT A +I  +  ++  Y  G+GS+ +R V   E       +IV+T +
Sbjct: 181 MDEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAVWSKEDG-----EIVITAL 235

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD--VILNQLYR 329
           PYQ + A ++E+IA  +R K++  + D++DESD +    ++ + R    D   ++  L+ 
Sbjct: 236 PYQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLFA 295

Query: 330 YTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            T L+  + VNM  +    KP    L  IL  +++FR + V RR +Y L+K   R H+L 
Sbjct: 296 TTDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHILD 355

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA  N+DEV+ IIR    P   ++ELM R                            
Sbjct: 356 GLLIAFLNIDEVIHIIRNEDEP---KQELMSR--------------------------FA 386

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE Q  AIL LRL  L  L   ++R E   L  E K+   ILSS   L  +IK+E+   
Sbjct: 387 LSEEQAEAILNLRLRHLAKLEETELRAEQKQLEQERKQLEKILSSDKNLNQLIKKEIEQD 446

Query: 509 KDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
                +PR ++IV  E    + +   +  E + V +S +G+V+         Q       
Sbjct: 447 AKTYASPRLSKIVEREEAKAISESALVPVEPVTVILSEMGWVRCAKGHDIDPQ------- 499

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
             +  +  D         ++  V+F  S G  Y      LP  S +++G+ +   L+L  
Sbjct: 500 -SLSYKAGDNYLAHVCGRSNQQVIFLDSTGRSYSLDPLSLP--SARSQGEPITGKLTLPA 556

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           G  I  ++    +++      ++ A+  G        D I  N++GK A+ L    ++L 
Sbjct: 557 GAMIEQLLMPKAEQA------LLMASDAGYGFVCNAEDLITRNKAGKAAISLPENAKVLP 610

Query: 687 VETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK---GDQVISMAIVL 742
                 ++ +L+  T   + + FP+S +   +      +  I  AK    ++++    V+
Sbjct: 611 PVVIENKSVLLVAITSANKMLLFPLSELPQLSKGKGNKIINIPAAKAKAREELLVRLFVI 670

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
              +    R    K     + +     E      +      + +E      +  E+F+LT
Sbjct: 671 EEGSSLIFRSGKRKVTLDAKEISHYYGERGRRGASLPRGVQHSAEIEIIPPEKPEEFVLT 730


>gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 745

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 243/751 (32%), Positives = 382/751 (50%), Gaps = 67/751 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    +++        +++    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MNQFTQPTED-------YLALHTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNTAKFKKSARAVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE RL K A  LL +LG+ TVD++ N+DG+ QEP +L AR PN+L+NG 
Sbjct: 114 DDPKSFAAMRYTESRLSKYAEVLLRELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGT 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP HN+ E+    + +ID P I L  LM  ++GPDFPT A I+  R  I+
Sbjct: 174 TGIAVGMATDIPPHNIKEIAYALIQLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIE 233

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGSI +R V   E+ +      V+T +P+QV+ A +LE+IA+ +R K++  + D
Sbjct: 234 QIYRTGRGSIRMRAVWKKEEGN-----AVITALPHQVSGAKILEQIAQQMRAKKLPMLED 288

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           LRDESD +    +I +    G   + ++N L+  T L+    +NM  +    +P    L+
Sbjct: 289 LRDESDHEHPTRLIIMPRHHGVHLEAVMNHLFATTDLEKSVRINMNMIGLDQRPLVKGLV 348

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   + RR  + L+K   R HVL GL +A  N+DEV+ IIR     ++   
Sbjct: 349 SILTEWLTFRRATLRRRLLFNLDKILKRLHVLKGLLVAFLNIDEVIHIIRTEDEQKSF-- 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ R                            LS +Q  AILEL+L  L  L   +IR 
Sbjct: 407 -LISR--------------------------FGLSLIQADAILELKLRHLAKLEEINIRA 439

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E ++L  E      +L+S  +L  +IK+++          RR+ +V+     +  + + +
Sbjct: 440 EQDALEKESGTLQSLLASEKKLNNLIKKDIQDDACLYGQNRRSPLVQRTASKESNENEVL 499

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V +S +G+         R  +       G+  +  D    +    +H S +   
Sbjct: 500 PSEPVTVILSKMGWA--------RCAKGHEIDPVGLNYKKSDAFYAMARGKSHQSFVLLD 551

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y     +LP    Q  G+ ++  L+  QG  +  +M    ++S       + A+ 
Sbjct: 552 STGRTYALDPMKLPHARHQ--GEPVMGKLTPPQGAVVKALMMAEPEQS------YLMASD 603

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISA 712
            G       +D +  NR GKI M L    +IL     T  N  LL  T LG+ + F ++ 
Sbjct: 604 AGYGFICTFADMVAKNRGGKILMTLPEGAQILPPLLITHANHYLLSITALGRMLIFSMAD 663

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +   +     G + IS+   D    +  V+H
Sbjct: 664 LPTLS--KGKGNKIISILSADWQAGLDRVIH 692


>gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 750

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 246/746 (32%), Positives = 372/746 (49%), Gaps = 67/746 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +            I  + +   ++  YL YA++ I+GRA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKATEPPAG--GGDIEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++  + Y KCARI G+VMGK+HPHG+A+IYDAL R++QD+++R  LI+GQGNFG+V
Sbjct: 59  RILRLDPGQGYKKCARIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL  + +D VDF+  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDSPAAMRYTEARMTDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I+NPD   DAL+  ++GPD PTG VI+     I+ 
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E        +VVTEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 239 AYDTGRGSFRVRARWETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+    R    ++++  L+R T L+S   +NM  L+G K P   +L  +L
Sbjct: 299 RDESAEDVRIVIEPKSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A + +V+VRR+++ L +   R  +L G  IA  NLDEV+RIIR    P+T      
Sbjct: 359 AEWLAHQRDVLVRRSRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKT------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L++ Q  AIL +RL  L  L   +++ E +
Sbjct: 413 -----------------------ELMRTFELTDTQAEAILNMRLRSLRKLEEFELKREFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEG---LLDMEDE 530
           +L  E  E   +L+S  R    I  E+  V++          RRT   +     LD    
Sbjct: 450 TLTGEKAEKEALLASDERQWAGIAAEVREVRETYSKKTKIGRRRTMFADAPNRALDDITV 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV----VMRDEDFVTDLFIVSTH 586
             I +E + V +S  G++            RG KG          R+ D +   F   T 
Sbjct: 510 ALIEKEPITVVLSKKGFL------------RGMKGHLADFSSLAFREGDGLQLAFHAMTT 557

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +LF S+ G  +     +LP G  + +G+ +     L   + I   + F  D       
Sbjct: 558 DKLLFLSTGGRAFTHGADKLPGG--RGQGEPIRLAFELEDDQDIA--LAFVADPERRR-- 611

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
             +  +  GN      +D +   R GK  M +  + ++         + + +  +  + +
Sbjct: 612 --LLVSSDGNGFVASEADMLANTRKGKQLMNVAGKTKLALAAPVGAGDHVAIVGENRKLL 669

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG 732
            FP+  +         GVR      G
Sbjct: 670 VFPLVQVPQMT--RGKGVRLQRYKDG 693


>gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus
           2308]
 gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase
           IV, subunit A:DNA gyrase C-terminal repeat,
           beta-propeller [Brucella melitensis biovar Abortus 2308]
 gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 770

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------VFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013]
          Length = 765

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/739 (30%), Positives = 357/739 (48%), Gaps = 74/739 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAK 731
           +++ A    + + G++ ++
Sbjct: 689 LKIMAKGKGLQIIGLNASE 707


>gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 787

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 394/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D+ EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 18  MGKSLIPPDDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 76

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 77  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 136

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 137 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 196

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++P+  ++ L+                       
Sbjct: 197 GIAVGMATNIPPHNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLKC 256

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I +AY TGRG+  +R     E+ +     IV+TEIPYQV K
Sbjct: 257 KVRGPDFPTGGILVEEHGNILDAYRTGRGAFRVRARWEKEEGNRGTWVIVITEIPYQVQK 316

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 317 SRLIEKIAELLLAKKLPLLDDVRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 376

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L GL IA  N
Sbjct: 377 SLNMNVLSHGKVPNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIAYLN 436

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P+                                  T  L++VQ  +
Sbjct: 437 LDEVIRIIREEDEPKQ-----------------------------DLMRTFELTDVQAES 467

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L +E  +   +L+S +R    I  E+ SV+++     
Sbjct: 468 ILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQWKKISAEIKSVREKFGPKT 527

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT   +    D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 528 ELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 579

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 580 LAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 637

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T               ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 638 DILTAFV------HDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 691

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + V FP+S I         GVR      G
Sbjct: 692 RVSG-DHIAVVGENRKMVVFPLSDIPEMT--RGKGVRLQKYKDG 732



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS +G G      +   + R GK +         ++   V+       D I +V + 
Sbjct: 651 LLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVS------GDHIAVVGEN 704

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++  P+++I   +R  KGV +      
Sbjct: 705 RKMVVFPLSDIPEMTRG-KGVRLQKYKDG 732


>gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
          Length = 770

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------VFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355]
          Length = 765

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIVKEMQADMKQFGDVRRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902]
 gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945]
 gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136]
          Length = 765

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N + +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLSDENEKRKLIIKEIQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 719


>gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190]
          Length = 780

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 30  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 90  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 149

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 150 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 209

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 210 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 269

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N + +L +I E    K                      I  +RD
Sbjct: 270 ARGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 329

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 330 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 389

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 390 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 443

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 444 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +VE             E +
Sbjct: 481 ELREEQGRLNILLSDENEKRKLIIKEIQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 539

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 540 TLILSEKGWI--------RSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRT 591

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 592 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 643

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 644 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGE 703

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 704 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 734


>gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
 gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
          Length = 770

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGL-LDMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
 gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M]
 gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
          Length = 775

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 364

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 365 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 424

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 425 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 455

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 456 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 515

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 516 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 567

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 568 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 625

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 626 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 679

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 680 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594]
          Length = 765

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T      
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIVKEMQADMKQFGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTILPVVILDSSGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 719


>gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
 gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
          Length = 770

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGL-LDMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKTPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
          Length = 770

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKGG 715


>gi|186701721|ref|ZP_02971413.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700988|gb|EDU19270.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 850

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 387/740 (52%), Gaps = 38/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K 
Sbjct: 3   DNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNI
Sbjct: 123 TEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +I
Sbjct: 183 PPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  +
Sbjct: 243 RACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ 
Sbjct: 303 IIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q           
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ +RL  LT     D++NE  +L  E K   + 
Sbjct: 412 ---------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQER 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           ++S       +KQ+++  K      R+T++ + L  +++ ++  I ++++ + +S  GY+
Sbjct: 457 INSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    + + +    G     ++  D +    I+++H  +L  +S   +      ++  
Sbjct: 517 KTVSKKSFESSKYDELG-----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITS 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQ 667
              +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+  I 
Sbjct: 572 MRWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDIN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N      MKL+  D ++S           I+  +KLG  + F +  I     R + G++
Sbjct: 631 KNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIK 689

Query: 726 GISLAKGDQVISMAIVLHAD 745
            + L   D+V ++ I  +  
Sbjct: 690 IMKLKPNDEVSAILITPNNG 709



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S     KR    +  I+    K  +   + K+N+   L++   +   
Sbjct: 601 EQFKIDEYQLVLASRLNLIKRIELSELDIN----KNSKQISIMKLNDNDNLISANLIKKG 656

Query: 851 DQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|171920470|ref|ZP_02931772.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902927|gb|EDT49216.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 850

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 387/740 (52%), Gaps = 38/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K 
Sbjct: 3   DNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNI
Sbjct: 123 TEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +I
Sbjct: 183 PPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  +
Sbjct: 243 RACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ 
Sbjct: 303 IIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q           
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ +RL  LT     D++NE  +L  E K   + 
Sbjct: 412 ---------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQER 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           ++S       +KQ+++  K      R+T++ + L  +++ ++  I ++++ + +S  GY+
Sbjct: 457 INSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    + + +    G     ++  D +    I+++H  +L  +S   +      ++  
Sbjct: 517 KTVSKKSFESSKYDELG-----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITS 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQ 667
              +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+  I 
Sbjct: 572 MRWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDIN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N      MKL+  D ++S           I+  +KLG  + F +  I     R + G++
Sbjct: 631 KNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIK 689

Query: 726 GISLAKGDQVISMAIVLHAD 745
            + L   D+V ++ I  +  
Sbjct: 690 IMKLKPNDEVSAILITPNNG 709



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S     KR    +  I+    K  +   + K+N+   L++   +   
Sbjct: 601 EQFKIDEYQLVLASRLNLIKRIELSELDIN----KNSKQISIMKLNDNDNLISANLIKKG 656

Query: 851 DQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
 gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
          Length = 775

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 364

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 365 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 424

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 425 LDEVIRIIREEDEP---KQELMR--------------------------VFELTDVQAES 455

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 456 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 515

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 516 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 567

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 568 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 625

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 626 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 679

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 680 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 775

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 395/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 364

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 365 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 424

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 425 LDEVIRIIREEDEP---KQELMR--------------------------VFELTDVQAES 455

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 456 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 515

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 516 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 567

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 568 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 625

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 626 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 679

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 680 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|13358030|ref|NP_078304.1| topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761865|ref|YP_001752552.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270990|pir||H82886 topoisomerase IV subunit A UU467 [imported] - Ureaplasma
           urealyticum
 gi|6899461|gb|AAF30879.1|AE002143_4 topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827442|gb|ACA32704.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 850

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/739 (30%), Positives = 386/739 (52%), Gaps = 38/739 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K Y
Sbjct: 4   NHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNIP
Sbjct: 124 EARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +IR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ +
Sbjct: 304 IDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +  Q  AI+ +RL  LT     D++NE  +L  E K   + +
Sbjct: 412 --------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
           +S       +KQ+++  K      R+T++ + L  +++ ++  I ++++ + +S  GY+K
Sbjct: 458 NSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +    G     ++  D +    I+++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSKYDELG-----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQI 668
             +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+  I  
Sbjct: 573 RWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDINK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S           I+  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHAD 745
           + L   D+V ++ I  +  
Sbjct: 691 MKLKPNDEVSAILITPNNG 709



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S     KR    +  I+    K  +   + K+N+   L++   +   
Sbjct: 601 EQFKIDEYQLVLASRLNLIKRIELSELDIN----KNSKQISIMKLNDNDNLISANLIKKG 656

Query: 851 DQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149]
 gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 765

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 360/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L    +   ++      +     + + ++  G   
Sbjct: 577 YTLDAAEIPGG--RGDGVPVSSLIELQNSAKPVAML------TGLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840]
 gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840]
          Length = 775

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 394/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 364

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +      +L G  IA  N
Sbjct: 365 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYLN 424

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 425 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 455

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 456 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 515

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 516 RLGKRRTTFTHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 567

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 568 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 625

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 626 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 679

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 680 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18]
 gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332]
 gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
          Length = 767

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|183508622|ref|ZP_02958127.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676081|gb|EDT87986.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 850

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 226/740 (30%), Positives = 386/740 (52%), Gaps = 38/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K 
Sbjct: 3   DNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNI
Sbjct: 123 TEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +I
Sbjct: 183 PPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  +
Sbjct: 243 RACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ 
Sbjct: 303 IIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q           
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ +RL  LT     D++NE  +L  E K     
Sbjct: 412 ---------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQKR 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           ++S       +KQ+++  K      R+T++ + L  +++ ++  I ++++ + +S  GY+
Sbjct: 457 INSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    + + +    G     ++  D +    I+++H  +L  +S   +      ++  
Sbjct: 517 KTVSKKSFESSKYDELG-----LKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITS 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQ 667
              +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+  I 
Sbjct: 572 MRWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDIN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N      MKL+  D ++S           I+  +KLG  + F +  I     R + G++
Sbjct: 631 KNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCL-NRLAKGIK 689

Query: 726 GISLAKGDQVISMAIVLHAD 745
            + L   D+V ++ I  +  
Sbjct: 690 IMKLKPNDEVSAILITPNNG 709



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S     KR    +  I+    K  +   + K+N+   L++   +   
Sbjct: 601 EQFKIDEYQLVLASRLNLIKRIELSELDIN----KNSKQISIMKLNDNDNLISANLIKKG 656

Query: 851 DQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 657 HNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
          Length = 767

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 359/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
 gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
          Length = 771

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 223/762 (29%), Positives = 374/762 (49%), Gaps = 77/762 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + + + S+ +  + +YL YA+ VI+ RA+P++ DGLKPV RRI++ M ++G++   K  
Sbjct: 15  NEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAKAK 74

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYT
Sbjct: 75  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYT 134

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++   A+ LL +LG+ TVD++ N+DG+  EP  L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 135 EAKMSAYANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILLNGTTGIAVGMATDIP 194

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV   + ++ NP++ +  L + I  PD PT A +I  +  ++  Y TGRGS  +
Sbjct: 195 PHNLNEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAIYETGRGSYKM 254

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HI     ++  +++  +PYQV+   + E+IA+L+ +K++  I D+ DESD +    
Sbjct: 255 RATFHI--DPKEKNLVIINALPYQVSGNKIQEQIAKLMTDKKLPWIVDIHDESDHENACR 312

Query: 311 VIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           ++   +    DV  +++ L+  T L+S + VNM  +    KP+   L  IL+ ++  R  
Sbjct: 313 IVLELKSTRVDVQRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWLVCRRS 372

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR +Y L+K   R H+L GL IA  N+DEV+RIIR   +P+                
Sbjct: 373 VVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPK---------------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                        +       L+E+Q  AIL++RL +L  L   ++R E + L  E    
Sbjct: 417 -------------LSLMQDYDLTEIQANAILDIRLRQLAKLEEIELRREQDELAAERAII 463

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHL 545
            + L +   L  ++  EL +   E    R +++   E    +++ D +  E +   +S  
Sbjct: 464 QEYLDNPDSLTNLMIDELTADMKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKA 523

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      +G+  R  D          +  +    S G  Y      
Sbjct: 524 GWI--------RAAKGHDVDAAGMAYRSGDSYQAHVRAKANEKIYVLDSTGRSYSIDAHS 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L   S + +G  L ++L    G     ++      +  N+  ++ A+  G    N + + 
Sbjct: 576 L--ASARGQGDPLTSVLKPPAGATFEQLL------TGDNDQRIILASSQGYGFINTIGNL 627

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE---------------------NDILLTTKLGQ 704
               ++GK  + L +   +L +     +                     + I + T  G 
Sbjct: 628 DSNQKAGKNIINLAADSRLLPIARIDAQTEVIVSSENNGIPASENSSTLDHIAVVTNAGY 687

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            + F +  +   A     G + I+L   ++V+++  +   D+
Sbjct: 688 LLIFALDDLPEQA--RGKGNKMINLKGDEEVLTITPLSKHDS 727



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 28/202 (13%)

Query: 727 ISLAKGDQVISMAIVLHADADYD-------ERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           I  AKG  V +  +   +   Y            Y+   + +   I   +      + D 
Sbjct: 526 IRAAKGHDVDAAGMAYRSGDSYQAHVRAKANEKIYVLDSTGRSYSIDAHSLASARGQGDP 585

Query: 780 SVEGNISEERC----QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                +Q I+  S +G+G   +  +   + ++GK I        
Sbjct: 586 LTSVLKPPAGATFEQLLTGDNDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAADSR 645

Query: 836 ----NEIGALVAVFPVNDN------------DQIILVSDKGTLIRVPVNEIRIASRATKG 879
                 I A   V   ++N            D I +V++ G L+   ++++   +R  KG
Sbjct: 646 LLPIARIDAQTEVIVSSENNGIPASENSSTLDHIAVVTNAGYLLIFALDDLPEQARG-KG 704

Query: 880 VVIFSTAKDERVVSVERIRESE 901
             + +   DE V+++  + + +
Sbjct: 705 NKMINLKGDEEVLTITPLSKHD 726


>gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
 gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
          Length = 754

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 231/731 (31%), Positives = 364/731 (49%), Gaps = 58/731 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE   T V + + ++  YL YA++ I  RA+PD RDGLKPVHRRIL+GM  + ++    +
Sbjct: 16  EETAPTPVDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPF 75

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYT
Sbjct: 76  KKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYT 135

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL+ + +D +DF+PNY G  +EP+VL +  PN+L NG  GIAVGMAT+IP
Sbjct: 136 EARMTSVARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIP 195

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HNL E+ D  + +I + +   + L+  ++GPDFPTG +I+  R  I  AY TGRGS  +
Sbjct: 196 PHNLAELCDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRV 255

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+        VVTEIPY V K+ ++EK+AEL+ E+++  +AD+RDES      V
Sbjct: 256 RARWTKEELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDESAEDVRIV 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVV 369
           +    R   A +++  L++ + L++ F +NM  L     P   +L   L+ ++  R EV+
Sbjct: 316 LEPRSRNIDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREVL 375

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L     R   L G+ I   NLDEV+RIIR   +   A+ EL +          
Sbjct: 376 QRRSRHRLAAILRRIEQLEGMIIVFLNLDEVIRIIREEDD---AKGELKK---------- 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q   IL+ RL  L  L   ++R EL  L  E  +   
Sbjct: 423 ----------------AFKLTDLQVDYILDTRLRSLRKLEEMELRRELKELTDERADIEA 466

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLDME---DEDCIVREDMVVT 541
           +L+   R    I  ++  +K           RRT   +    ++    E  I RE + V 
Sbjct: 467 LLADDGRQWKTIAAQVRELKKIYGPQTEIGKRRTTFEDAPAAVDLDLAEAMIEREPITVV 526

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS  G++        RA +   +  S +  + +D +   F   T + +L  ++ G  Y  
Sbjct: 527 VSKKGWI--------RALKGHVQDLSTLQFKGDDELDTSFFAQTTSKILVLATNGKAYTL 578

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              +LP G  +  G+ +     +++   +  ++P            ++     G      
Sbjct: 579 DASKLPGG--RGHGEPIRLFADIDEDASVARVLP------HEPQASLLLVADDGRGFVVA 630

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             D +   + G+  + ++    +  V      + + +  +  + + FP+      A    
Sbjct: 631 QDDLLSSTKKGRAVLNVEPPARLKVVTEAAG-DHVAIIGENRKLLVFPLEEAPRMA--RG 687

Query: 722 VGVRGISLAKG 732
            GVR      G
Sbjct: 688 KGVRMQRYKDG 698


>gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18]
 gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1]
 gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
 gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
          Length = 767

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 767

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 230/753 (30%), Positives = 361/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EPV L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMEAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    ++ +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLGDENEKRKLMIKEMQADMKQYGDARRT-LVEEAGRAVLTQTTADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YTLDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLADMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNTGESMTHTAVSSEPE 721


>gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
 gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
          Length = 791

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 236/781 (30%), Positives = 370/781 (47%), Gaps = 75/781 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 37  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVV 96

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 97  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 156

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++   TVDF PNYDG+F EP +L AR P VL+NG  GIAVG+AT IP HNL EV
Sbjct: 157 AELLLSEIDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 216

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
               VA++DNP++    LM  + GPDFP G  I+     I  AY +GRGS+ +R    +E
Sbjct: 217 AGAAVALLDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVE 276

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           K +  + +++VTE+P   +   +L +I E    K                         +
Sbjct: 277 KLARGQWRVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRV 336

Query: 300 RDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD      ++   +      D  +N L   TSL+   ++N+V +    +P +  L  
Sbjct: 337 RDESDSDSPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDGRPGQKGLKP 396

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RR ++ L++   R H+L G  IA  ++DEV+R+IR S  P+     
Sbjct: 397 ILAEWLAFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKP---- 452

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+EVQ   ILE+RL +L  L    +  E
Sbjct: 453 -------------------------DLIKAFGLTEVQAEDILEIRLRQLARLEGFKLEKE 487

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L+ L  E +    +L++   L G+++ E+ +   +    RR+ I      +     I  E
Sbjct: 488 LSELREEREGLRHLLATPDALTGLMRDEIQADAAKYGDARRSEIKAAERAV-LTQTIADE 546

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+       S +  +D D +  +    T   V+   S G
Sbjct: 547 PVTIILSQKGWI--------RARVGHNVDLSALSFKDGDALATVVETRTVWPVIVLDSKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G  +  G  + +++ L  G +   ++      S  ++   V A   G 
Sbjct: 599 RAYTVDPAVVPTG--RGDGVPVASLVELQDGAKPAQLL------SGPDSTRFVLANSGGY 650

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-----DILLTTKLGQCVRFPIS 711
               K+ D     ++GK  M L+  + +L+              ++     G+ + FP  
Sbjct: 651 GFIAKIGDMAGRVKAGKAFMTLEDGESVLAPLHVPASAKLDALRLVAAADNGRLLAFPAG 710

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            ++  A     G+  + L +G+ + ++ +V    A    +    K    +  L   D + 
Sbjct: 711 ELKELA--KGRGLMLMQLGEGEALTAIGLVGGDKAQLTAQSVRGKQSEEKVALAEYDGKR 768

Query: 772 I 772
            
Sbjct: 769 A 769


>gi|302552702|ref|ZP_07305044.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470320|gb|EFL33413.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 685

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 243/734 (33%), Positives = 369/734 (50%), Gaps = 92/734 (12%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAY 241
            ATNIP HNL EV  G    ++NP+   + L+    E I+GPDFPTGA+++GR GI+ AY
Sbjct: 11  WATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAY 70

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RD
Sbjct: 71  RTGRGSITMRAVIEVEEIQN-RQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRD 129

Query: 302 E-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           E S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ 
Sbjct: 130 ETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRH 189

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM  
Sbjct: 190 WVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARHGLMD- 248

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                     + + E+Q  AILE++L RL  L R  I  E + L
Sbjct: 249 -------------------------LLEIDEIQANAILEMQLRRLAALERQKIVQEHDEL 283

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+VV
Sbjct: 284 QAKISEYNEILASPVRQRGIVSEELAAIVEKYGDDRQTKLIPYEGDMSIEDLIAEEDIVV 343

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+
Sbjct: 344 TVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYR 403

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + LP     ARG+             +  ++ F  DE+                   
Sbjct: 404 VKGYELPDAGRDARGQ------------HVANLLAFQPDEAI------------------ 433

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
                                 EIL++        ++L TK G   + P+          
Sbjct: 434 ---------------------AEILAIRDYEAVPYLVLATKAGLVKKTPLKDYD---SPR 469

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV  I+L   +      ++       D+ +  +   +   R  + D       +  S 
Sbjct: 470 SGGVIAINLRSMEDGSDDELIGAELVSSDDDLLLISKKAQSIRFTASDETLRPMGRATSG 529

Query: 781 VEGNISEERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           V+G    E  + L +       F+ T ++ G+ KRT+  ++R+  R G GI+A  + +  
Sbjct: 530 VKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVE-- 587

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + +  K + VV + R
Sbjct: 588 DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINLGKRDAVVGIAR 647

Query: 897 IRESEIVDEAESTE 910
             E+    E    +
Sbjct: 648 NAEAGREAEEVDGD 661



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 105/263 (39%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E + ++           +V  +  G VK+ PL  Y + R GG     +   ++   D + 
Sbjct: 431 EAIAEILAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRSMEDGSDDELI 490

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS+   +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 491 GAELVSSDDDLLLISKKAQSIRFTASDETL-RPMGRATSGVKGMSFREGDELLSMNVVR- 548

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + ++
Sbjct: 549 -----PGTFVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDE 603

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ IR   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 604 ILAITLSGGVIRTRVNEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDI 662

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
                   + +  T+E  +   +
Sbjct: 663 VVDETAEGVATTGTDEGEAPSAE 685


>gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140]
 gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679]
 gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679]
          Length = 767

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9]
 gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9]
          Length = 760

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 231/772 (29%), Positives = 373/772 (48%), Gaps = 82/772 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   + D        S+ +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M
Sbjct: 1   MTDLTAAPD--------SLPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ GE++GKYHPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS 
Sbjct: 53  KEMGLAAGAKPVKSARVVGEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSR 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP +L AR P VL+NG  
Sbjct: 113 DGDGAAAMRYTEARLTPIADLLLAEIDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGAS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT IP HNL EV    VA++ +P +D   LM  + GPDFP G  +I     I+ 
Sbjct: 173 GIAVGMATEIPPHNLTEVAAAAVALLKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRA 232

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
           AY +GRGS+ +R    +EK +  + +++V+E+P   +   +L +I +    K        
Sbjct: 233 AYESGRGSVRVRAQWEVEKLARGQWRVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKAL 292

Query: 298 ----------------DLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSV 339
                            +RDESD +    ++   + +  + D  +  L   TS++   S+
Sbjct: 293 SQEQQNLKNLMLSQLDRVRDESDGEHPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSM 352

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P++  L  IL  ++ FRE  V RR  + L+K   R H+L G  +   +LD
Sbjct: 353 NLVMVGMDGRPQQKGLKAILSEWLGFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLD 412

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            V+R+IR S  P+                                     LSE+Q   IL
Sbjct: 413 AVIRVIRESDEPKP-----------------------------ELMAAFGLSEIQAEDIL 443

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  EL  L  E      +L+S      +I +E+ +   +    RR+
Sbjct: 444 EIRLRQLARLEGFRLEKELGELRDEAGGLRHLLASDHARQKLIIKEIEADAAKYGDRRRS 503

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +            +  E + + +S  G++        RA+       + +  +D D + 
Sbjct: 504 ELKPAEKA-TLTQTVADEPVTLILSKKGWL--------RARVGHHVDLATLAFKDGDALA 554

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            +    T   V+   S G  Y      +P G  +  G  + +++ + +  ++  ++  PE
Sbjct: 555 AVLETRTVWPVVVLDSHGRAYTVDAADVPTG--RGDGVPVTSLIDVQEQAQVCHMLAAPE 612

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QEN 694
           D         V A   G     ++ D +   ++GK  + L++ +  L+    T       
Sbjct: 613 D------ARFVVAGSGGYGFVVEMKDMVSRVKAGKAFLTLEAHEIPLAPVPVTAAGLAAG 666

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            ++  ++  + + FP S ++  A     G+  + L  GD + ++A+V  + A
Sbjct: 667 QLVAISQQARALVFPASELKALA--KGRGLMLMQLDDGDTLETLAVVEGSAA 716


>gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 235/749 (31%), Positives = 367/749 (48%), Gaps = 70/749 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++ +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M Q+ + 
Sbjct: 8   PAEPDSPAAIVDAPFETALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLS 67

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +  Y K AR+ GEV+GKYHPHG+ A+YDA+ R+AQ ++LR  L+EGQGNFG++DGD  A
Sbjct: 68  PDSAYKKSARVVGEVLGKYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGNIDGDNAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + A  L+  L + TVDF P Y+   +EPV+    +PN+L NG  GIAVGM
Sbjct: 128 AARYTEARLTRTAISLMAGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGASGIAVGM 187

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGR 245
           ATNIP+HN+ EV++  + VI+NP ++   LM+I++GPD  TG +I+     I  AY TGR
Sbjct: 188 ATNIPSHNVDEVIEATLEVIENPAVEHARLMQIMQGPDLATGGLIVDSPETISAAYETGR 247

Query: 246 GSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GS  IR   H             IE+  G + Q++++EIPYQV K  ++E+IA+++ +K+
Sbjct: 248 GSFRIRARFHAAEAESAADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIAQVIADKK 307

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PER 351
           +  + D+RDESD Q   V++   R    +++   LYR T L++ F +NM  L+  + P  
Sbjct: 308 VPILEDVRDESDEQIRIVLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLDATRTPMV 367

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ ++A + +++ RRT++ L K  DR  +L G  IA  NLD V+ IIR    P+
Sbjct: 368 MGLKELLQNWIASQIDILQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEIIRTEDEPK 427

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
                                                L++ QT AIL +RL  L  L   
Sbjct: 428 PV-----------------------------MMAEFGLTDRQTEAILNMRLRSLRKLEEM 458

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL- 525
            +R E + L  E  E   +L S  R    +K++L +++ E         RRT I E    
Sbjct: 459 QLRQEKDDLLKEQDELQKLLESPVRQRTRLKRDLNALRKEYGKDTALGARRTTIDEAEPT 518

Query: 526 -DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            +   +  I +E   V +S  G++        RA +           ++ D +   F   
Sbjct: 519 VEFSMDAMIEKEPTTVILSARGWI--------RAAKGHADLSQEWKFKEGDELAFAFHAQ 570

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T   +L  +  G  Y     +LP    +  G+ +  ++ ++    I         E    
Sbjct: 571 TTDKLLIATDDGRFYTLGADKLPGA--RGFGEPVRTMVDIDNSAHIVFAWAHKPGER--- 625

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLG 703
              ++ A+  G     K  D +   R G+  M L    ++  V       + + +     
Sbjct: 626 ---LLLASTLGKGFVIKSDDLLAETRKGRAVMTLKGDAKLARVAHIGEGHDHVAVVGDNR 682

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + V F +  +   +     GV+      G
Sbjct: 683 KLVVFNLEEMPEMS--RGQGVQLQRYRDG 709


>gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 767

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 356/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+   Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPISSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 767

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
 gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
          Length = 767

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
          Length = 770

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 251/764 (32%), Positives = 394/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+A D+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTT 510

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT        D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 RLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T            +  ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + + FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6]
 gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6]
          Length = 774

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 377/761 (49%), Gaps = 77/761 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK--- 69
           + G  ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +     
Sbjct: 15  DDGGDALTLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMQRMGLAFAGAGG 74

Query: 70  -KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K VKCAR+ G+V+G+YHPHG+ A YDAL RMAQD+S R  L++GQGNFGS DGD  AA 
Sbjct: 75  AKPVKCARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAM 134

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  LLD++ + T+DF PNYDGS +EP +L AR P VL+NG  GIAVG+AT
Sbjct: 135 RYTEARLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVLLNGASGIAVGLAT 194

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGS 247
            +P+HNL EV    VA+I +  +  + L  ++  PD+P G  I+   T I+ AY TGRGS
Sbjct: 195 EVPSHNLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSETDIREAYRTGRGS 254

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD--------- 298
           + +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K                
Sbjct: 255 LKVRARWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKAGKKALSTEQVQNK 314

Query: 299 ---------LRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-G 346
                    +RDES++     ++   R        ++  L  +TSL+    +N+  +   
Sbjct: 315 ALLLSVLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLECSAPINLTMVGAD 374

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P + +L  IL  ++ FR+  V RRT++ L +  DR HVL G  + + N+DEV+RIIR 
Sbjct: 375 GRPTQKSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLVLLNIDEVIRIIRE 434

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S  P+ A   L+ R                            LS+ Q   ILE+RL +L 
Sbjct: 435 SDEPKAA---LIAR--------------------------FALSDRQAEDILEIRLRQLA 465

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            L    I  EL  L  E  +  DIL++   L  ++ +E+ +        RRT I      
Sbjct: 466 RLEAIRIEQELAELRTEQGKLDDILANPGTLRRLLIREIEADAKAHGDARRTLIQAEKRA 525

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           + +   +V E + + VS  G+V        RA+   G   +G   +  D +   F   T 
Sbjct: 526 VVE-VKVVDEPVTLVVSQKGWV--------RARTGHGHDPAGFAFKAGDGLYGTFECRTV 576

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            +++   S G VY   V  LP    +  G  + +++ L  G +I   +          + 
Sbjct: 577 DALVVLGSDGRVYSVPVNTLPGA--RGDGVPITSLIELEAGSQILHYIA------GSAST 628

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQC 705
            ++ A   G     ++ D I   + GK  + L+  +  L       E+  +   +  G+ 
Sbjct: 629 PLLLAHSGGTGLLAQIGDLISRQKGGKAFLTLEPSERCLPPLPVALEHRQVACLSSSGRL 688

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           + F +  ++    R   G RG+ L   D+  ++A V    A
Sbjct: 689 LVFGLDELK----RQPNGGRGLMLMDLDEADALAAVATFGA 725



 Score = 41.4 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 20/218 (9%)

Query: 680 SRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +  ++ V+    E   L+ ++ G  +           FA +   G+ G       + + 
Sbjct: 522 EKRAVVEVKVV-DEPVTLVVSQKGWVRARTGHGHDPAGFAFKAGDGLYG---TFECRTVD 577

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             +VL +D                     GD   ITSL    +     S+          
Sbjct: 578 ALVVLGSDGRVYSVPV------NTLPGARGDGVPITSLIELEAG----SQILHYIAGSAS 627

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +L     G G      D     + GK     + S+       VA+    ++ Q+  +S
Sbjct: 628 TPLLLAHSGGTGLLAQIGDLISRQKGGKAFLTLEPSERCLPPLPVAL----EHRQVACLS 683

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             G L+   ++E++      +G+++    + + + +V 
Sbjct: 684 SSGRLLVFGLDELKRQPNGGRGLMLMDLDEADALAAVA 721


>gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 770

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 252/764 (32%), Positives = 392/764 (51%), Gaps = 81/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D+ EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPDDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R     E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWEKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P+                                  T  L++VQ  +
Sbjct: 420 LDEVIRIIREEDEPKQ-----------------------------DLMRTFELTDVQAES 450

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL +RL  L  L   +IR E + L +E  +   +L+S +R    I  E+ SV+++     
Sbjct: 451 ILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQWKKISAEIKSVREKFGPKT 510

Query: 514 --TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
               RRT   +    D+ED     I RE + + VS  G++        RA +      S 
Sbjct: 511 ELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFST 562

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 563 LAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 620

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I T               ++  +  GN      S+ +   R GK  M + + DE    +
Sbjct: 621 DILTAFV------HDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQ 674

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +  + I +  +  + V FP+S I         GVR      G
Sbjct: 675 RVSG-DHIAVVGENRKMVVFPLSDIPEMT--RGKGVRLQKYKDG 715



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS +G G      +   + R GK +         ++   V+       D I +V + 
Sbjct: 634 LLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVS------GDHIAVVGEN 687

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++  P+++I   +R  KGV +      
Sbjct: 688 RKMVVFPLSDIPEMTRG-KGVRLQKYKDG 715


>gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11]
 gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11]
 gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11]
          Length = 767

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 358/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum]
          Length = 755

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/785 (30%), Positives = 383/785 (48%), Gaps = 68/785 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL--IEGQGNFG 118
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L  ++GQGNFG
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFG 117

Query: 119 SVDGDPPAAER-YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++DGD PAA   +    +   A  LL+ + +D V+FRPNYDG  +EP+VL   +PN+L N
Sbjct: 118 NIDGDNPAAYPLHRSAHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLAN 177

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTG 236
           G  GIAVGMAT+IP HN  E+ D  + +I+ PD    AL++ ++GPDFPTG + +  +  
Sbjct: 178 GAQGIAVGMATSIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQA 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I  AY TGRGS  +R     E+ +     +VVTEIP+ V K+ ++EKIAEL  +K++  +
Sbjct: 238 IAEAYTTGRGSFRVRARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLV 297

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLI 355
            D+RDES      V+    +     +++  L+R T L++   +N  V + G  P+   L 
Sbjct: 298 GDVRDESAEDVRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLA 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A  
Sbjct: 358 ECLREWLDHLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPA-- 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            L+EVQ  AIL +RL  L  L   +IR 
Sbjct: 416 ---------------------------LMKAFKLTEVQAEAILNMRLRSLRKLEEMEIRT 448

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DM 527
           E  +L  E+K    +L+S +     + +++  V+D          RRT   +        
Sbjct: 449 EDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRRTTFADAPEHDLAA 508

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
            +E  + RE + V VS  G++        R  +   +  SG+  + +D +   F   T +
Sbjct: 509 IEEAFVEREPVTVVVSDKGWI--------RTMKGHVEDLSGLAFKQDDRLGFAFFAETTS 560

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F++ G  Y   V +LP G  +  G+ +   + L Q      +        +     
Sbjct: 561 KLLLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQEAAPVALFV------NKGGRK 612

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            + A+  G        D +   + GK  + +D  +E  +V     +       +  + + 
Sbjct: 613 FLVASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVAGHRRETAKMLV 672

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG---DQVI--SMAIVLHADADYDERICYMKHMSAQR 762
           FP+  I   A     GVR      G   D V+  + A +   D+   E    MK ++  +
Sbjct: 673 FPLDQIPEMA--RGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQ 730

Query: 763 RLISG 767
              + 
Sbjct: 731 GTRAD 735


>gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
 gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
          Length = 749

 Score =  472 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 233/742 (31%), Positives = 380/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +      +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLP--FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +PD   + L + + GPDFPTG +++  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  S     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRIGRGFFRLRSRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           +DES      V++   R    ++++  L++ T  +  F +N+  L+ G  P   +L   L
Sbjct: 299 QDESAEDIRIVLVPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y L++   R  +L G  IA  NLDEV++IIR    P   +R+L+
Sbjct: 359 QQWLVHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEP---KRKLI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 416 NR--------------------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG---LLDMEDE 530
           +L  E ++  ++L+S  +   I+ +E+  V++          RRT   E     LD   +
Sbjct: 450 TLKAEKEKLQNLLASPIKQWKIVSEEIKKVRNTFGPETLLGKRRTTFEEAPRHDLDDIQQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTVVISEKGWM--------RALKGHLNDYKALSFKEGDSLKLAFPAFTTDKIV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ ++    + T      +E       ++ 
Sbjct: 562 LISTGGKFFALGANSLPGG--RGHGEPIRLLVDMDDEHDVLTAFVHHAEEK------LLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  GN      ++ I   R GK  M + S D++         + + +  +  + + F I
Sbjct: 614 VSSQGNGFIVPAAEVIANTRKGKQVMNVKSPDKVKLCAPVHG-DHVAVVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I         GVR     +G
Sbjct: 673 EQIPEM--NRGKGVRLQRYKEG 692


>gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035]
 gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035]
          Length = 767

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 229/753 (30%), Positives = 357/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV++ IR S +P+       
Sbjct: 377 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKAIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G   
Sbjct: 579 YSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 LKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 721


>gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB0_50A10]
          Length = 753

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 246/804 (30%), Positives = 411/804 (51%), Gaps = 60/804 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+    S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   K
Sbjct: 2   KEQDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSK 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D     AA R
Sbjct: 62  YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K A  L+ +L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+
Sbjct: 122 YTESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP+HN+ EV+D  +  ++NP  +L  L +II+GPDF     +I     +   Y+TGRG  
Sbjct: 182 IPSHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGGF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             +     E     + +I++  +PYQ + + +LE+IA+ + +K+I  + DL DE D  + 
Sbjct: 242 KAQAHWTQE-----KNEIIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKEP 296

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+VI LK    +A  ++N L+  T LQ  +  NM  ++    P+ FTL+ ++K ++ FR
Sbjct: 297 VRLVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKGGPKVFTLVELIKEWLVFR 356

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +  V R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+    +         
Sbjct: 357 KNTVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKEIIK--------- 407

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS++Q  AILE+RL +L  L +  +  E ++L  E  
Sbjct: 408 --------------------AFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLLEEQN 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   IL S++RL  +IK ELL +KDE    R++ I E        +E+ +V E + V +S
Sbjct: 448 KIEKILGSKTRLKTLIKNELLEIKDEFGEDRKSPIKESSEAKVFSEEETLVTESITVVLS 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+ +      S +  R ED + D     ++   +F  S G  Y    
Sbjct: 508 EAGWI--------RSAKGHEIDPSSLSYRGEDKLQDFCRGKSNQLSVFLDSNGKAYSLPS 559

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP  S +  G  +   +S + G +  + +   +D     + Y++  T  G    ++  
Sbjct: 560 YSLP--SARGMGDPISGRVSADSGVKFISTLIGNDD-----DKYMIMNTA-GYGYISEFK 611

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +   +SGK  MKL +  ++L      +++  I   + +G+ + F I+ + V       
Sbjct: 612 NMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIGRLLIFEINELPVLP--KGK 669

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G + I++     V     + HA          ++       L   D E   S +      
Sbjct: 670 GNKIINIPTSKFVAKEEYMAHAQLISPSSSLRVESGKRFLTLKLKDLENYISSRAKRGNM 729

Query: 783 GNISEERCQELKLKEQFILTVSEK 806
                 +   +  + +   +VSE+
Sbjct: 730 LPQGYRKVDNMIEEVEATDSVSEE 753


>gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
 gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
          Length = 748

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 237/739 (32%), Positives = 385/739 (52%), Gaps = 67/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I        +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKEI------SYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ 
Sbjct: 55  SELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAP 114

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L K A  LL++LG+ TVD++PN+DGS  EP  L AR P++L+NG 
Sbjct: 115 DDPKSFAAMRYTESKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNGT 174

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN+ E+    V +++NP   L+ L+ +I+GPD+PT A +I  +  I 
Sbjct: 175 MGIAVGMATDIPPHNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADIV 234

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  GRGSI +R V   E+      +IV+  +P+Q + + ++E+IA  +R K++  + D
Sbjct: 235 KMYEQGRGSIKMRAVWKKEE-----NEIVIYALPHQASPSKIIEQIATQMRNKKLPLVED 289

Query: 299 LRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           +RDESD +    ++ + R    D   +++ L+  T L+  + VNM  +    KP    L+
Sbjct: 290 IRDESDHENPIRIVLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLV 349

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR   VVRR  Y L+K  +R H+L GL  A  N+D+V+ IIR    P   + 
Sbjct: 350 TILTEWLHFRRTTVVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEP---KA 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL++R                            L+ +Q  AIL LRL  L  L    ++ 
Sbjct: 407 ELIER--------------------------FALTGIQADAILNLRLRHLAKLEEHQLQA 440

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCI 533
           E + L  E  E   +L+S  RL  +IKQE+        +PRR+ ++E      + + D  
Sbjct: 441 EQHQLEHERNELQRLLASDRRLNNLIKQEIQQDAKAFVSPRRSPLIERAEAKAIAESDLT 500

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+ V +S  G+V        R  +       G+  R  D         ++  V+F  
Sbjct: 501 PTEDITVILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHTRGRSNQPVVFLD 552

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G  Y      LP  S +++G+ L + +SL +G  I  ++    +        ++ A+ 
Sbjct: 553 STGRAYTIDPTTLP--SARSQGEPLTSKISLPEGASIQQVLMANPESK------MLMASD 604

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPIS 711
            G       +D I  N++GK  + L    +IL  +     +++ +   + + + + FP++
Sbjct: 605 AGYGFICTFNDLISRNKAGKAVISLPENAKILVPQWIENSDELSIVAMSTINRMLVFPLT 664

Query: 712 AIRVFAGRNSVGVRGISLA 730
            +         G + +++A
Sbjct: 665 ELPTLT--KGKGNKIMNIA 681


>gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 739

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/764 (29%), Positives = 383/764 (50%), Gaps = 56/764 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  ++    +    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ +
Sbjct: 1   MNMPDDMIGRVEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLRL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +  + KCARI G+V+GKYHPHG++A Y+AL R+AQD++ R  L++GQGNFG++DGD  
Sbjct: 61  DPDAGFKKCARIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL + A  +L+ +  D VD RP Y+    EP VL A +PN+L NG  GIAVG
Sbjct: 121 AAYRYTEARLTEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATG 244
           MAT+IP HN G+V D  +A+I+NP  D   L++ ++GPDFPTG +++  R  +  AY TG
Sbjct: 181 MATSIPPHNAGQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG   +R   H E       +I++TEIPYQV KA ++E++A L+ EK++  +AD+RDES 
Sbjct: 241 RGGFRVRARWHKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDEST 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVA 363
                V+    R  + DV++  ++R T+L+S F +NM  L+  + P    +  +L+ ++ 
Sbjct: 301 ETVRIVLEPKSRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWLD 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EV++RR+ + L     R  +L G  +   NLDEV+RI+R    P+ A          
Sbjct: 361 HRHEVLIRRSTHRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAA---------- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+++Q  ++L +RL  L  L   +IR E   L  E
Sbjct: 411 -------------------LIAAFSLTDMQAESVLNMRLRSLRKLEEMEIRREHAKLSKE 451

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIV--EGLLDMEDEDCIVRED 537
            K+   +L S       I  E+ +V+D+        RRT I      +++  E  + RE 
Sbjct: 452 RKDLDALLKSEPLRWKRIAHEVAAVRDQFGSGKLGDRRTDIAGPPATVEVAAEAFVEREP 511

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +        +  ++ D +       T   +   ++ G 
Sbjct: 512 ITVILSEKGWM--------RALKGHIADTVELRFKEGDALRFALPCETTDRLCLLATNGK 563

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y  K   LP G  +  G+ +  +      + +  ++   E+         +  +  G  
Sbjct: 564 AYTLKAADLPRG--RGDGQPVRLLAGFGNEDDVIALLVPKEE------ARYLLVSSAGRG 615

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
              + +D +   R+G+ A+ +   +E  +     + + + + ++  + + FP+  +   A
Sbjct: 616 FVIRGADLLAEKRTGRQALNVKPGEE-AAFCVPAEGDHVAVISESRKLLVFPLEQVPEMA 674

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                GV          ++ + +         E+    + +S  
Sbjct: 675 --RGAGVILNKGGAPRDIMVLTLAHGLSWMSGEKQRVERDLSYW 716


>gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
          Length = 798

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 239/753 (31%), Positives = 370/753 (49%), Gaps = 73/753 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +V +    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N  +VK AR
Sbjct: 42  DTVPLAQYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSAR 101

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GEV+GK+HPHG+++ YDA+ R+AQ++SLR  L++GQGNFGS DGD  AA RYTE RL 
Sbjct: 102 VVGEVLGKFHPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLT 161

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL +L   TVD  PNYDG FQEP +L AR P VL+NG  GIAVGMAT IP+HNL 
Sbjct: 162 PIAAVLLSELDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLR 221

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           E+       + NPD   + ++  I GPD P+GA I+     I+  Y TGRGS+ +R    
Sbjct: 222 EIGGAAALCVRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWS 281

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+ +  + ++ V E+P+ V+   ++E+I EL   K  +    L  E       ++  L 
Sbjct: 282 VEELARGQWRVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLD 341

Query: 316 R--------------------GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           +                      S + ++  L  +TSL+   S+NMV +    +P++  +
Sbjct: 342 KVADESDKDQAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDGRPKQKAI 401

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             I++ +  FR   V RR  Y L++  DR HVL G      NLDEV+RIIR S +P+ A 
Sbjct: 402 TDIIREWAQFRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVA- 460

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+ R                            LS+ Q   ILE+RL +L  +    I 
Sbjct: 461 --LIAR--------------------------FELSDRQAEDILEIRLRQLARMEGIKIE 492

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L  E  +   +L+S S L   + +E+          RRT I E    +     +V
Sbjct: 493 RELKGLQEEGADLNKMLASESLLRRRVAREIDEDIKAYGDDRRTLI-EQAERVSLTATVV 551

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V +S   +         R +   G   S V  ++ D +   F   +    +  SS
Sbjct: 552 DEPVTVLISQKYWG--------RTRIGHGLDLSAVAFKEGDSLLAAFECRSTDQCIVISS 603

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G V    V  LP G  +  G  L  ++ L  G +I  +     +++      V+ AT  
Sbjct: 604 NGRVCSIPVSVLPGG--RGDGVPLTTLVELAAGAKIVRVFCGAAEQN------VLLATSA 655

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPIS 711
                 +LSD I  N++GK  + +   DE++         ++  ++  ++ G+ + F + 
Sbjct: 656 SYGFVCQLSDMIGRNKAGKQFITI-EGDELILPPVLYTPSEQAQVISVSRSGRLLSFALP 714

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            ++  +     G+  + L +GD + S+ +   +
Sbjct: 715 EMKRLSS-GGRGLIVMGLEEGDVLASLMVAEKS 746


>gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
 gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
          Length = 753

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/738 (32%), Positives = 375/738 (50%), Gaps = 66/738 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  N  + 
Sbjct: 7   DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA RYTE
Sbjct: 67  KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ + A  LL+ + +D VDFRP Y+   +EP VL   +PN+L NG  GIAVGMAT+IP 
Sbjct: 127 AKMTEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMATSIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL-GRTGIKNAYAT 243
           HN  E+ D  + +I +P   L+ L+          I GPDFPTG +I+  R  +  +Y T
Sbjct: 187 HNAHELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASMLESYRT 246

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES
Sbjct: 247 GRGGFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 306

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFV 362
                 V++   R   A++++  L++ T L+S   +NM  L+  + P    L  +L  ++
Sbjct: 307 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 366

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A R EV+ RR+++ L     R  +L G  +A  N+DEV+RIIR    P+           
Sbjct: 367 AHRREVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPK----------- 415

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  +I+                L++VQ  AIL +RL  L  L   +IR E ++L  
Sbjct: 416 -----AMMIER-------------FALTDVQAEAILNMRLRSLRKLEEFEIRTEFDALSK 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDEDCIV 534
           E  E   +L+S  +    +  E+  VK +         RR+      +  ++   +  I 
Sbjct: 458 EKAEIEALLASDDKQWQAVAWEIGEVKKKFAKATELGKRRSTFADAPDADIEAIQQAMIE 517

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +E + V +S  G++        RA +      S +  +D D +   F   T   +L F++
Sbjct: 518 KEPITVVISEKGWI--------RALKGHISDTSALQFKDGDALKVAFPAQTTDKILVFTT 569

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY     +LP G  +  G+ L  ++ +   + + T +             ++ ++  
Sbjct: 570 GGKVYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTALV------HDPARKLIVSSAA 621

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           GN      SD +   R GK  M +   DE   V      + + +     + + FP++ I 
Sbjct: 622 GNGFVVTESDIVANTRKGKQVMNVVMPDEAKLVVPTKG-DHVAVVGDNRKMLVFPLAQIP 680

Query: 715 VFAGRNSVGVRGISLAKG 732
             A     GVR      G
Sbjct: 681 EMA--RGKGVRLQRYKDG 696


>gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
 gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
          Length = 772

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 223/772 (28%), Positives = 376/772 (48%), Gaps = 78/772 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +H +       + + + S+ +  + +YL YA+ VI+ RA+P++ DGLKPV RRI++ M +
Sbjct: 6   DHTLDP-ILANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSE 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++   K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D 
Sbjct: 65  LGLKSTAKAKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDD 124

Query: 123 DPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
               AA RYTE ++   A+ LL +LG+ TVD++ N+DG+ QEP  L AR PN+L+NG  G
Sbjct: 125 PKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILLNGTTG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNA 240
           IAVGMAT+IP HNL EVV   + ++ NP++ +  L + I  PD PT A +I  +  ++  
Sbjct: 185 IAVGMATDIPPHNLIEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAM 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  +R   HI     ++  +++  +PYQV+   + E+IA+L+ +K++  I D+ 
Sbjct: 245 YETGRGSYKMRATFHI--DPKEKNLVIIDALPYQVSGNKIQEQIAKLMTDKKLPWITDIH 302

Query: 301 DESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +    ++          D +++ L+  T L+S + VNM  +    KP+   L  I
Sbjct: 303 DESDHENACRIVLELRSTRVDVDRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEI 362

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R  VV RR +Y L+K   R H+L GL IA  N+DEV+RIIR   +P+      
Sbjct: 363 LEEWLVCRRSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPK------ 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                  +       L+++Q  AIL++RL +L  L   ++R E 
Sbjct: 417 -----------------------LSLMQDYDLTDIQANAILDIRLRQLAKLEEIELRREQ 453

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVR 535
           + L  E     + L +   L  ++  EL +   E    R + +   E    +++ D +  
Sbjct: 454 DELAAERAIIQEYLDNPDSLTTLMIDELTADMKEHGNERVSPLAEREEAQALKESDLVPS 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E +   +S  G++        RA +      +G+  R  D         ++  +    S 
Sbjct: 514 EPITAVLSKAGWI--------RAAKGHDVDAAGMSYRSGDAYQAHVRGKSNEKIYVLDST 565

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y      L   S + +G  L ++L    G     ++   +D+       ++ A+  G
Sbjct: 566 GRSYSIDAHSL--ASARGQGDPLTSVLKPPAGATFEQLLTGADDQR------IILASSQG 617

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---------------------N 694
               N + +     ++GK  + L +   +L +     +                     +
Sbjct: 618 YGFINTIGNLDSNQKAGKNIINLAANSRLLPIACIDTQADLLVSAENNGISDTENSSTPD 677

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            I + T  G  + F +  +   A     G + I+L   ++V+++  +   D+
Sbjct: 678 HIAVVTNAGYLLIFALDDLPEQA--RGKGNKMITLKGDEEVLTITPLSKQDS 727


>gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703]
          Length = 481

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 253/468 (54%), Positives = 332/468 (70%), Gaps = 9/468 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RR
Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                +             DG  YL+E Q +AIL+LRL +LTGL  ++
Sbjct: 426 RAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEN 473


>gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 759

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/810 (29%), Positives = 388/810 (47%), Gaps = 84/810 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++ +    + +YL YA++V+ GRA+P ++DG KPV RRILF M  MG+    K VK AR
Sbjct: 4   DTLELAPYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSAR 63

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE  L 
Sbjct: 64  VVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLT 123

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL ++ + TVDF PNYDG+F EPV L AR P VL+NG  GIAVGMAT IP+HNL 
Sbjct: 124 PLAELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLN 183

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           EV    VA++  P + L  LM+ I  PDF  G  I+     +++ Y TG+GS+ +R    
Sbjct: 184 EVTQAAVALLKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQ 243

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IA 297
           I+K +  + +++V+E+P   + A +L +I E    K                      I 
Sbjct: 244 IDKMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIE 303

Query: 298 DLRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
            +RDESD +    ++   + +    +  +N L   TSL+   SVN+V +    +P +  L
Sbjct: 304 KVRDESDSEHPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNL 363

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R   V RR ++ L+    R H+L G  IA  ++DE++R+IR S  P+   
Sbjct: 364 KTILQEWLDYRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPKQ-- 421

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E+Q   ILE+RL +L  L    ++
Sbjct: 422 ---------------------------DLIRQFGLTEIQADDILEIRLRQLARLEGVKLK 454

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +ELN L  E     ++LS       +I +E+ +   +    RRT +VE            
Sbjct: 455 SELNELREEQGSLKNLLSDEDAKKKLIIKEMKADAKQFGDARRT-LVEAAERATLTQTTA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + + +S  G++        RA+       S +  ++ D +  +    T  SV+    
Sbjct: 514 DEPITLILSQKGWI--------RARAGHDVDLSQIAFKEGDDLQQVLQTRTVQSVVVLDD 565

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG  Y      +P G  +  G  L +++ +  G +   ++    D+      + + A   
Sbjct: 566 LGRSYTINPADVPKG--RGDGVPLGSLIEIQAGAKALAMLSGSNDD------HYLLAHSG 617

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRF 708
           G     KL D    +++GK  M L++ + +L             +  ++L T+  + + F
Sbjct: 618 GYGFICKLEDLHSRSKTGKTVMMLEAGETVLPPVPVYLSALINPDCKVVLATEQKRLLAF 677

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           PI  +++ A     G++ I L   D++I + ++   +   D        +  +R   S +
Sbjct: 678 PIGEMKIMA--KGRGLQLIRLQGNDKLILINVLKTENCTLD--------IVGKRGGESKE 727

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              +  + N    +G +S       KL E 
Sbjct: 728 IVHLVDIINKRGHKGKVSNISGSLKKLSEY 757


>gi|304372932|ref|YP_003856141.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309123|gb|ADM21603.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 881

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 224/738 (30%), Positives = 380/738 (51%), Gaps = 38/738 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+ +   S+   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M  +G++ +K 
Sbjct: 3   KNEEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN GS+D DP AA RY
Sbjct: 63  FKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LVNG  GIA G AT+I
Sbjct: 123 TETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D C+  + N       + +II+GPDFPTG +I    GI  A+ TG+G +V+
Sbjct: 183 PPHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTKGIDEAFETGQGKVVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                I       + I + EIP+ V K+ ++++I E+  EK+I  I D+ D+SDR G  +
Sbjct: 243 VSKYKIINEPK-YKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +IEL++ A+ ++ILN L + T +Q  +S N VA++ Y P+  ++  +L  ++   +E+  
Sbjct: 302 LIELEKEANIELILNYLLQKTQMQISYSYNSVAIHNYTPKLLSIYKMLDYYLDHLKEIKT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +  ++ L K   R  ++ G        DEV++IIR S N +    E              
Sbjct: 362 KEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIE-------------- 407

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              + +Q  AI E+RL RL+ + + +  NE N+L  ++ +   +
Sbjct: 408 -----------ALVQNFDFTLLQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTL 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L +       +   L  +K +    R+T+I+     +E         E+    ++  G  
Sbjct: 457 LENDLEFNQYLVSILKEIKTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLY 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++   V+ +        S + ++++D+   +  + T   +L F+S+G      +  +  
Sbjct: 517 KKMSNKVFESN-----DISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIED 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            + +A    L     L + E I + +   +      N +V   TK+G  +R  L D    
Sbjct: 572 ATFKATWSDLQIDYLLKKDETIISAIEIAD---FSENQFVCLITKNGMGKRISLKDLEVS 628

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +   +AMK+   D+++  +      DI L T   +  R+    + ++   N+ GVR +
Sbjct: 629 RFKKTILAMKIKQDDQLIGAKLSDNYQDIALFTNQNRASRYSEIEVPIYGT-NTAGVRIL 687

Query: 728 SLAKGDQVISMAIVLHAD 745
            L +G+ +    +    D
Sbjct: 688 KLKEGEYIDHFVLGQSDD 705



 Score = 61.9 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 157/482 (32%), Gaps = 69/482 (14%)

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +  +    +  I+ I D        G   L E++  A +EL L  L    +  I    NS
Sbjct: 273 KQIDEIRFEKKIEGILDVIDQSDRTGISILIELEKEANIELILNYLLQKTQMQISYSYNS 332

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I      L S  ++L      L  +K +             ++ + +    R ++V
Sbjct: 333 VA--IHNYTPKLLSIYKMLDYYLDHLKEIKTK------------EIEFDLKKNNQRLEIV 378

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
                +  +    + + R      +G    ++++ DF                 +   +Y
Sbjct: 379 KGFLKVADITDEVIKIIRNSDNSKQGVIEALVQNFDFTLLQATA---------IAEMRLY 429

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA----TKHG 655
           +         S   +   L    +L    ++  +    E++  +N   V       TK G
Sbjct: 430 RL--------SRIDQQNYLNEKNTLID--QVAKLTTLLENDLEFNQYLVSILKEIKTKFG 479

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             R+ ++     IN++ KI +  +             E    + TK G   +        
Sbjct: 480 RERKTQI-----INQNFKIEINQEE--------LIKNEESYFVITKQGLYKKMS------ 520

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                S  +  ISL + D  +    V          I           L + +     + 
Sbjct: 521 NKVFESNDISNISLKEKDYFV---FVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKAT 577

Query: 776 KNDSSVEGNISEERCQ------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +D  ++  + ++             + QF+  +++ G GKR S  D  +S R  K I A
Sbjct: 578 WSDLQIDYLLKKDETIISAIEIADFSENQFVCLITKNGMGKRISLKDLEVS-RFKKTILA 636

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             + + ++   L+     ++   I L +++    R    E+ I    T GV I    + E
Sbjct: 637 MKIKQDDQ---LIGAKLSDNYQDIALFTNQNRASRYSEIEVPIYGTNTAGVRILKLKEGE 693

Query: 890 RV 891
            +
Sbjct: 694 YI 695


>gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
 gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
          Length = 758

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 377/750 (50%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGQSLLPP-SGGDDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  
Sbjct: 120 DGDNAAAYRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL 232
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+          I GPDFPTG VI+
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIV 239

Query: 233 -GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             R  +  +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +
Sbjct: 240 ESRASMAESYRTGRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIAR 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           ++  + D+RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P 
Sbjct: 300 KLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++A R EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P
Sbjct: 360 VMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEP 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                  +I+                L++VQ  AIL +RL  L  L  
Sbjct: 420 KAV----------------MIER-------------FGLTDVQAEAILNMRLRSLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL 525
            +IR E +SL  E  E   +L+S  +    +  E+  VK +         RR+   +   
Sbjct: 451 FEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPD 510

Query: 526 ---DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
              +   +  I +E + V +S  G++        RA +      S +  +D D +   F 
Sbjct: 511 ADVEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F++ G  Y     +LP G  +  G+ L  ++ +   + + T          
Sbjct: 563 AQTTDKILIFTTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTAFV------H 614

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                ++ ++  GN      SD +   R GK  M +   DE   V      + + +  + 
Sbjct: 615 DPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG-DHLAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + + FP+  +   A     GVR      G
Sbjct: 674 RKMLVFPLVQVPEMA--RGKGVRLQRYKDG 701


>gi|330953529|gb|EGH53789.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 645

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 234/655 (35%), Positives = 351/655 (53%), Gaps = 102/655 (15%)

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           EK++  I +LRDESD+ G RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P
Sbjct: 1   EKKLEGITELRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRP 60

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
               L  +L+AFV  R EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP 
Sbjct: 61  RILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPT 120

Query: 410 PETARRELMQRSWNASDIKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILEL 460
           P  A+  L++  W +S + ++++            D  Y +  +G  +LS  Q +AILEL
Sbjct: 121 PAEAKEALIKTPWESSAVVEMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILEL 179

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL RLTGL  + +  E   +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I
Sbjct: 180 RLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEI 239

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           ++  LD+   D I  E+ VVT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L
Sbjct: 240 LDARLDLTLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHL 299

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--- 637
            + ++HT++L FSS G VY  K + +P  S  ARG+ L+N+L L+ GE ITT++P     
Sbjct: 300 LVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEA 359

Query: 638 -------------------------EDE--------SSWNNLYVVFATKHGNVRRNKLSD 664
                                    E+E              ++  +T +G V++  L  
Sbjct: 360 MRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVA 419

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA++LD  D ++S      E +I+L +  G+  RF  S +R    R + GV
Sbjct: 420 FSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAMG-RTARGV 478

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G ++ISM                                              
Sbjct: 479 RGMRLPEGQKLISML--------------------------------------------- 493

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A   ++ N  G LV  
Sbjct: 494 IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGA 543

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V D ++I+L+SD+GTL+R  V E+    R  +GV +   A DE++V +ER++E
Sbjct: 544 VQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNPQGVTLIKLASDEKLVGLERVQE 598



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 102/271 (37%), Gaps = 37/271 (13%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR    G   + + + D +
Sbjct: 382 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSS--GLIALELDEGDIL 439

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++  P
Sbjct: 440 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IP 495

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDS-RDEILSVETCTQEN 694
           E+ S      ++ A++ G  +R  +S+F +  R G   IAM  +     ++         
Sbjct: 496 EEGSQ-----ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 550

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI------------------ 736
           +I+L +  G  VR  +  +     RN  GV  I LA  ++++                  
Sbjct: 551 EIMLISDQGTLVRTRVGEVSSLG-RNPQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 609

Query: 737 ----SMAIVLHADADYDERICYMKHMSAQRR 763
                  IV  A+A+ D+    ++  +A   
Sbjct: 610 EEVIDGVIVDGAEAEVDDAGEDLQADAASDE 640


>gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
 gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
          Length = 765

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 240/731 (32%), Positives = 367/731 (50%), Gaps = 61/731 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +   ++  YL YA++ I+GRA+PD+RDG+KPVHRRIL  M  + +     + KCA
Sbjct: 25  IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+A+IYDAL R++Q +++R  L++GQGNFG+VDGD PAA RYTE R+
Sbjct: 85  RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL+ + +D VDFR  Y+   +EP+VL A +PN+L NG  GIAVGMATNIP HN+
Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I  P+   D LME + GPDFPTG +I+     +   Y TG+G   +R   
Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E     + QIVVTEIPYQV K+ ++EK AEL+  K++  + D+ DES      V+   
Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDESAEDIRVVLTPK 324

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRT 373
            R     +++ QL+R T L++ F +NM  L+G K P+  ++  +L+A++  R+ V+VRR 
Sbjct: 325 SRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRRN 384

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L +   R  VL G  IA  N+DEV+RIIR   +P+ A   L+ R             
Sbjct: 385 RNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQA---LIAR------------- 428

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  A+L LRL  L  L   ++R E + L  E      +L+S
Sbjct: 429 -------------FELTDAQAEAVLNLRLRALHKLEEMELRKEFSDLKEEKASIEGLLAS 475

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDEDCIVREDMVVTVSHL 545
                  I  E+   K +         RRT      E  LD      I +E + + VS  
Sbjct: 476 DELQWKTIAWEVGQTKKKFSKATDLGARRTTFETAMEVDLDAVAAAMIEKEPVTIVVSQK 535

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      + +  ++ D +   F   T   +L F++ G  Y     +
Sbjct: 536 GWI--------RALKGHAPDFAALTFKEGDKLLTAFHAETTDKLLMFTTAGKFYTLAADK 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G  +  G+ +  ++ ++    I ++               +  +  GN      +D 
Sbjct: 588 LPGG--RGHGEPVRIMVDMDNDADILSLFIHKPGRKR------MLVSSLGNGFVVAETDL 639

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE----NDILLTTKLGQCVRFPISAIRVFAGRNS 721
           I   R GK ++ +    E         E    + + +  +  + + FP+  +        
Sbjct: 640 IANTRKGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLLIFPLDQVPEMG--RG 697

Query: 722 VGVRGISLAKG 732
            GVR      G
Sbjct: 698 KGVRLQRYKDG 708


>gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
 gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
          Length = 758

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 243/750 (32%), Positives = 377/750 (50%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGQSLLPP-SGGDDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  
Sbjct: 120 DGDNAAAYRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--------EIIRGPDFPTGAVIL 232
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+          I GPDFPTG VI+
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIV 239

Query: 233 -GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             R  +  +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +
Sbjct: 240 ESRASMAESYRTGRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIAR 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           ++  + D+RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P 
Sbjct: 300 KLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++A R EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P
Sbjct: 360 VMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEP 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                  +I+                L++VQ  AIL +RL  L  L  
Sbjct: 420 KAV----------------MIER-------------FGLTDVQAEAILNMRLRSLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL 525
            +IR E +SL  E  E   +L+S  +    +  E+  VK +         RR+   +   
Sbjct: 451 FEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPD 510

Query: 526 ---DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
              +   +  I +E + V +S  G++        RA +      S +  +D D +   F 
Sbjct: 511 ADVEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F++ G  Y     +LP G  +  G+ L  ++ +   + + T          
Sbjct: 563 AQTTDKILIFTTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTAFV------H 614

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                ++ ++  GN      SD +   R GK  M +   DE   V      + + +  + 
Sbjct: 615 DPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG-DHLAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + + FP+  +   A     GVR      G
Sbjct: 674 RKMLVFPLVQVPEMA--RGKGVRLQRYKDG 701


>gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
 gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
          Length = 753

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 381/747 (51%), Gaps = 65/747 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VS+    + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K
Sbjct: 10  DGVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELGLKAGAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTE 132
            AR  G+V+GKYHPHG++++Y+A+  MAQ++S R  L++GQGN+G S D    AA RYTE
Sbjct: 70  SARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +LG+ TV ++ N+DG+  EP VL AR PNVL+NG  GIAVGMAT+IP 
Sbjct: 130 SKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HNL EVV  C+ +++ P   +D L E I+GPD+PT A I+     ++N Y TG+GSI +R
Sbjct: 190 HNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYKTGKGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR-- 309
            V   E +      +VVT +P+QV+ + +LE+IA+ +  K++  +ADLRDESD +     
Sbjct: 250 AVWQKEGSD-----VVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDESDHENPTRL 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           V+I        + ++N L+  T L+  + VN+  +     PE  +L  IL  ++ FR + 
Sbjct: 305 VIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDGGPEVKSLDKILTEWLQFRSDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L K  +R   L  L I   N+DEV+RIIR    P+     L++R        
Sbjct: 365 VRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPKPV---LIER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q   I+E +L +L  L    IR+E   L  E +   
Sbjct: 414 ------------------FDLVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            IL+S  RL  ++K+ELL V +E    RR+ I          +E+ +  E + V +S  G
Sbjct: 456 QILASARRLKTLVKKELLEVAEEYGDDRRSPIASRGEAKAFTEEELMTTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R+ +        +  +  D         ++ SV+   S G  Y      L
Sbjct: 516 WV--------RSAKGHDIDPQSLSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTVAAHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S + +G+ L   ++   G     +M    D+        + A+  G     K SD  
Sbjct: 568 P--SARGQGEPLTGRINSPSGASFEGLMMGRADD------LYLLASDAGYGFVVKFSDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVFAGRNSV 722
             N++GK A+ L     +L              +   +  G+ + FP++ +   +     
Sbjct: 620 TKNKAGKAALSLPKGARVLQPGMVAGTETELRYVAAVSNEGRMLIFPLTELPTMSRGKGN 679

Query: 723 GVRGI---SL-AKGDQVISMAIVLHAD 745
            + GI    L A+ + V+++AI+   D
Sbjct: 680 KIIGIPPSRLQAREEFVVAVAIINERD 706



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +   L  S+ G+G      D +  N++GK   +           +VA     +   
Sbjct: 594 MGRADDLYLLASDAGYGFVVKFSDLQTKNKAGKAALSLPKGARVLQPGMVAGTE-TELRY 652

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
           +  VS++G ++  P+ E+   SR  KG  I         A++E VV+V  I E +
Sbjct: 653 VAAVSNEGRMLIFPLTELPTMSRG-KGNKIIGIPPSRLQAREEFVVAVAIINERD 706


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 232/742 (31%), Positives = 383/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +      +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLP--FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +PD++ + L + + GPDFPTG +++  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  S     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRVGRGFFRLRSRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           +DES      V++   R    ++++  L++ T  +  F +N+  L+ G  P   +L   L
Sbjct: 299 QDESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y L++   R  +L G  IA  NLDEV++IIR    P   +++L+
Sbjct: 359 QQWLEHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEP---KKQLI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 416 SR--------------------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG---LLDMEDE 530
           SL  E ++  ++L+S  +   II +E+  V++          RRT   E     LD   +
Sbjct: 450 SLKAEKEKLQNLLASPIKQWKIISEEIKKVRNTFGPETPLGKRRTTFEEAPRHDLDDIQQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPITIVISEKGWM--------RALKGHLNDYKALSFKEGDSLKLAFPAFTTDKIV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ ++    + T      +E       ++ 
Sbjct: 562 LISTGGKFFAIGANSLPGG--RGHGEPIRLLVDMDDEHDVLTAFVHHAEEK------LLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + HGN      ++ I   R GK  M + + D++         + + +  +  + + F I
Sbjct: 614 VSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLCVQVNG-DHVAVVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I         GVR     +G
Sbjct: 673 EQIPEM--NRGKGVRLQRYKEG 692


>gi|294155860|ref|YP_003560244.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
 gi|291599928|gb|ADE19424.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
          Length = 912

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 245/821 (29%), Positives = 414/821 (50%), Gaps = 47/821 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I + S+   M   +  Y+  +I  RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 6   EEIVERIINNSLDKIMAERFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTNDK 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ ++YDA+  M+Q W   + L++  GN GS+D DP AA R
Sbjct: 66  PYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKSGIPLLDMHGNVGSLDNDPAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  +++L+DL K+TV F PN+D S +EP VL   +PN+LVNG  GIA+GMAT 
Sbjct: 126 YTEVRMAKVCNYMLEDLKKNTVAFIPNFDDSEKEPSVLPTIFPNLLVNGTTGIAIGMATE 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-GSI 248
           +P HNL EV++  +A +  P I LD LME I+GPDFPTG +I G  G+  A+ +G+    
Sbjct: 186 MPPHNLNEVLEATIAKLRRPSITLDGLMEHIKGPDFPTGGIIYGNKGVFEAFESGKLEKE 245

Query: 249 VIRGVSHIEKTSGDREQI-VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            I+     E    D+ Q   +TEIP+ V K+ ++  I  L+  + I  + +++D+SDR+G
Sbjct: 246 KIKLFCKYEVVKKDKLQFIEITEIPFGVVKSQLVYDIDVLINTETIDGLLEIKDQSDREG 305

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++VI L   A+ + I++ L + TS+Q  +S N V ++   P+   L  +L+A++   + 
Sbjct: 306 IKIVITLSEEANVESIISFLLQKTSMQVNYSYNNVVIHNNSPKLMGLNELLEAYIEHIKI 365

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R   Y L K   R  +++G        D+V+++IR +   + A  E           
Sbjct: 366 IKTRTLTYDLEKYLLRLEIVLGFIKVSEIPDKVIKVIRATEGGKAAVIE----------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +  Q  AI ELRL RL+   ++    E   L  +I   
Sbjct: 415 --------------NLMNAFNFTTNQATAIAELRLYRLSKTDKEAFLIEQADLEKKIANT 460

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
            ++L    + +  +   L  +  ++ TPRRT+I E       + +D +  E + +  S L
Sbjct: 461 KELLDDEKKFVNYLILLLKQMIKDMPTPRRTQIFEEEFTFNHDKKDLVKEEIVNIAFSKL 520

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+   V  +        S   ++++D++  +   +T  + L F++ G      V++
Sbjct: 521 GYIKRLSQKVVDSN-----DFSTFALKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYK 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +     +  G  L   + L  GE I  ++   E E   +  ++V ATK G  +R K+ DF
Sbjct: 576 IQETKWKELGTHLSAFVDLAPGENIINVI---EVEDWNSPDFIVMATKLGFFKRTKIKDF 632

Query: 666 IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                +    A+ +D++DE+++V       DIL+ T +G   ++  + I ++    + G 
Sbjct: 633 EVSRTNKTYTAINIDNKDEVINVAVSDGTKDILIITAMGFATKYNEAEISLYGP-KAKGT 691

Query: 725 RGISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +G+ L   D V           +++ +D  Y +++   +     +     +  +   L  
Sbjct: 692 KGVYLVNKDFVACFTPTHFNDIVIMISDDGYIKKMKSREIYYVPKTAKGKEIFKNRKLNP 751

Query: 778 DSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDF 817
               + + SE   + L KL++  I   S K +    S   F
Sbjct: 752 YFISDMHSSENDEKILIKLEDNKIAVRSTKDYSITNSDDSF 792



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 94/240 (39%), Gaps = 13/240 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +  +K G ++R        ++ +      L   D +L ++     ++ L+ T  G     
Sbjct: 515 IAFSKLGYIKRLSQK---VVDSNDFSTFALKEDDYLLYIDKANTVHNFLVFTNWGNYAII 571

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I+       +G      + LA G+ +I+  ++   D +  + I     +   +R  
Sbjct: 572 PVYKIQE-TKWKELGTHLSAFVDLAPGENIIN--VIEVEDWNSPDFIVMATKLGFFKRTK 628

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQ-ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             D E   + K  +++  +  +E     +    + IL ++  GF  + +  +  +     
Sbjct: 629 IKDFEVSRTNKTYTAINIDNKDEVINVAVSDGTKDILIITAMGFATKYNEAEISLYGPKA 688

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG +   +   +    +    P + ND +I++SD G + ++   EI    +  KG  IF 
Sbjct: 689 KGTKGVYLVNKD---FVACFTPTHFNDIVIMISDDGYIKKMKSREIYYVPKTAKGKEIFK 745



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 98/292 (33%), Gaps = 45/292 (15%)

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S   +   LI    L +  +I       +DE  + N  ++         +  + D     
Sbjct: 439 SKTDKEAFLIEQADLEK--KIANTKELLDDEKKFVNYLILLL-------KQMIKDMPTPR 489

Query: 670 RSGKI----AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           R+           D +D         +E   +  +KLG   R     +            
Sbjct: 490 RTQIFEEEFTFNHDKKD------LVKEEIVNIAFSKLGYIKRLSQKVVDSNDFST----- 538

Query: 726 GISLAKGDQVISMA--------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
             +L + D ++ +         +V     +Y     Y    +  + L +  +  +     
Sbjct: 539 -FALKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYKIQETKWKELGTHLSAFVDLAPG 597

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           ++ +     E+          FI+  ++ GF KRT   DF +S R+ K   A ++   +E
Sbjct: 598 ENIINVIEVED-----WNSPDFIVMATKLGFFKRTKIKDFEVS-RTNKTYTAINIDNKDE 651

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS---RATKGVVIFSTA 886
              ++ V   +    I++++  G   +    EI +     + TKGV + +  
Sbjct: 652 ---VINVAVSDGTKDILIITAMGFATKYNEAEISLYGPKAKGTKGVYLVNKD 700


>gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 473

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 247/496 (49%), Positives = 345/496 (69%), Gaps = 26/496 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQEL 505
           +L+S + +  IIK+  
Sbjct: 456 VLASDAMVKEIIKKRF 471


>gi|330723479|gb|AEC45849.1| DNA topoisomerase IV subunit A [Mycoplasma hyorhinis MCLD]
          Length = 888

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 224/738 (30%), Positives = 380/738 (51%), Gaps = 38/738 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+ +   S+   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M  +G++ +K 
Sbjct: 10  KNEEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDKA 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN GS+D DP AA RY
Sbjct: 70  FKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LVNG  GIA G AT+I
Sbjct: 130 TETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATDI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D C+  + N       + +II+GPDFPTG +I    GI  A+ TG+G +V+
Sbjct: 190 PPHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTKGIDEAFETGQGKVVL 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                I       + I + EIP+ V K+ ++++I E+  EK+I  I D+ D+SDR G  +
Sbjct: 250 VSKYKIINEPK-YKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGISI 308

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +IEL++ A+ ++ILN L + T +Q  +S N VA++ Y P+  ++  +L  ++   +E+  
Sbjct: 309 LIELEKEANIELILNYLLQKTQMQISYSYNSVAIHNYTPKLLSIYKMLDYYLNHLKEIKT 368

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +  ++ L K   R  ++ G        DEV++IIR S N +    E              
Sbjct: 369 KEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIE-------------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              + +Q  AI E+RL RL+ + + +  NE N+L  ++ +   +
Sbjct: 415 -----------ALVQNFDFTLLQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTTL 463

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L +       +   L  +K +    R+T+I+     +E         E+    ++  G  
Sbjct: 464 LENDLEFNQYLVSILKEIKTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGLY 523

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++   V+ +        S + ++++D+   +  + T   +L F+S+G      +  +  
Sbjct: 524 KKMSNKVFESN-----DISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIED 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            + +A    L     L + E I + +   +      N +V   TK+G  +R  L D    
Sbjct: 579 ATFKATWSDLQIDYLLKKDETIISAIEIAD---FSENQFVCLITKNGMGKRISLKDLEVS 635

Query: 669 N-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +   +AMK+   D+++  +      DI L T   +  R+    + ++   N+ GVR +
Sbjct: 636 RFKKTILAMKIKQDDQLIGAKLSDNYQDIALFTNQNRASRYSEIEVPIYGT-NTAGVRIL 694

Query: 728 SLAKGDQVISMAIVLHAD 745
            L +G+ +    +    D
Sbjct: 695 KLKEGEYIDHFVLGQSDD 712



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 157/482 (32%), Gaps = 69/482 (14%)

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +  +    +  I+ I D        G   L E++  A +EL L  L    +  I    NS
Sbjct: 280 KQIDEIRFEKKIEGILDVIDQSDRTGISILIELEKEANIELILNYLLQKTQMQISYSYNS 339

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I      L S  ++L      L  +K +             ++ + +    R ++V
Sbjct: 340 VA--IHNYTPKLLSIYKMLDYYLNHLKEIKTK------------EIEFDLKKNNQRLEIV 385

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
                +  +    + + R      +G    ++++ DF                 +   +Y
Sbjct: 386 KGFLKVADITDEVIKIIRNSDNSKQGVIEALVQNFDFTLLQATA---------IAEMRLY 436

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA----TKHG 655
           +         S   +   L    +L    ++  +    E++  +N   V       TK G
Sbjct: 437 RL--------SRIDQQNYLNEKNTLID--QVAKLTTLLENDLEFNQYLVSILKEIKTKFG 486

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             R+ ++     IN++ KI +  +             E    + TK G   +        
Sbjct: 487 RERKTQI-----INQNFKIEINQEE--------LIKNEESYFVITKQGLYKKMS------ 527

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                S  +  ISL + D  +    V          I           L + +     + 
Sbjct: 528 NKVFESNDISNISLKEKDYFV---FVNKIQTKNKLLIFTSVGNYIFIPLHTIEDATFKAT 584

Query: 776 KNDSSVEGNISEERCQ------ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +D  ++  + ++             + QF+  +++ G GKR S  D  +S R  K I A
Sbjct: 585 WSDLQIDYLLKKDETIISAIEIADFSENQFVCLITKNGMGKRISLKDLEVS-RFKKTILA 643

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             + + ++   L+     ++   I L +++    R    E+ I    T GV I    + E
Sbjct: 644 MKIKQDDQ---LIGAKLSDNYQDIALFTNQNRASRYSEIEVPIYGTNTAGVRILKLKEGE 700

Query: 890 RV 891
            +
Sbjct: 701 YI 702


>gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
 gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
          Length = 805

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 235/773 (30%), Positives = 361/773 (46%), Gaps = 76/773 (9%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           D     YL YA++V+ GRA+P   DG KPV RRIL+ M +MG+  + ++VK AR+ G+V+
Sbjct: 72  DYAARRYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVGDVI 131

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG++++YDA+ RMAQDWSLR  +++GQGNFGS DGD  AA RYTE RL   A  L
Sbjct: 132 GKYHPHGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIAELL 191

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L +L + TVD++PNYDG+  EP +L AR P  L+NG  GIAVGMAT IP HNL EV +  
Sbjct: 192 LAELDEGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVANAA 251

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           V +I NPD   D ++++I GPD+P GA I+     I   Y +GRGS+ +R    IE  + 
Sbjct: 252 VNLIRNPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIENLAR 311

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVRE-------KRI---------------VDIADL 299
            + ++V+TE+P  V+ A ++ +I             K++               +  + +
Sbjct: 312 GQWKLVITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISESGV 371

Query: 300 RDESDRQG-YRVVIELKRGAS-ADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
           RDES ++   R+VIE        D ++  L  +TSL++  S+N+  L     P + +L  
Sbjct: 372 RDESGKEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNGTPRQASLYS 431

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           ++  +  FR   V RRT++ L  A  R H+L G    + ++D V+++IR S +P+     
Sbjct: 432 MIAEWCRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKA---- 487

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LSE+Q   ILE+RL +L  L    I  E
Sbjct: 488 -------------------------DLMAHFKLSEIQAEDILEIRLRQLARLEGIKIGEE 522

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCI 533
           L  L  E      +L S   L   +  E+ +   +    RRT I               I
Sbjct: 523 LAKLREEAAGLNKLLDSEEALRACVAAEIEADAKKYGDDRRTLIEADAKVTMSDAKTVSI 582

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           V E   + VS  G++        R++       + +  R  D +       T  S++   
Sbjct: 583 VDEPTTLIVSKHGWL--------RSRTGHNIDPTQLTFRSGDSLLACLPCRTVDSLIILD 634

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
            LG  Y      +P G  +  G    +++    G ++   +    D+        + A  
Sbjct: 635 HLGRAYSISAADIPGG--KGDGVPATSVVDFQDGGKLCLALSTSADKR------YLVAAD 686

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G   R + SDF+   ++GK  + L   +          E +I   TK G+ + F I  +
Sbjct: 687 GGYGFRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAEGEIACVTKDGRALVFNIEEV 746

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R+ A     G++ I  A G   +   I +        +   ++     R    
Sbjct: 747 RLLA--KGRGLKLIDAAPGKTALEEIIPVVDGVAGKLKGERLEICRGNRGGKG 797



 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 84/277 (30%), Gaps = 75/277 (27%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +    ++T  M   +  S  +    +  +KHG +R     +           +   S D 
Sbjct: 566 IEADAKVT--MSDAKTVSIVDEPTTLIVSKHGWLRSRTGHNIDPTQ------LTFRSGDS 617

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L+   C   + +++   LG+      +               I   KGD V + ++V  
Sbjct: 618 LLACLPCRTVDSLIILDHLGRAYSISAAD--------------IPGGKGDGVPATSVVDF 663

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            D     ++C     SA +R                                     L  
Sbjct: 664 QDGG---KLCLALSTSADKR------------------------------------YLVA 684

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G+G R    DF    ++GK        +     A     P     +I  V+  G  +
Sbjct: 685 ADGGYGFRCQGSDFLSRGKAGKAFLTLGDGE-----APAIFMPAPAEGEIACVTKDGRAL 739

Query: 864 RVPVNEIRIA--SRATKGVVIFSTAKD----ERVVSV 894
              + E+R+    R   G+ +   A      E ++ V
Sbjct: 740 VFNIEEVRLLAKGR---GLKLIDAAPGKTALEEIIPV 773


>gi|269115286|ref|YP_003303049.1| Topoisomerase IV subunit A [Mycoplasma hominis]
 gi|117582117|gb|AAC33842.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322911|emb|CAX37646.1| Topoisomerase IV subunit A [Mycoplasma hominis ATCC 23114]
          Length = 933

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 235/732 (32%), Positives = 378/732 (51%), Gaps = 40/732 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      +E  + I   ++ D M + +  Y+  +I  RAIPD RDGLKPV RRIL+ M
Sbjct: 1   MKKDRKEEIQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ ++ + K ARI G+V+G+YHPHG+++IY+AL RMAQDW     LIE  GN GS+
Sbjct: 61  WNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL+K +  +L DL +  V   PN+D S  EP+VL A +PN+LVNG  
Sbjct: 121 DDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT IP HNLGEV+D  +A+I NP I ++ L EI++GPDFPTGA+I G   IK A
Sbjct: 181 GIAAGFATEIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            ++G+G I I    H      D  +   I + EIP+ V K+ ++  I  +  +K+I  I 
Sbjct: 241 LSSGQGRITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIK 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++ D++DR G  + I+L+ GA+AD I+  L   T L   +S NMVA++  +P    L   
Sbjct: 301 EVLDQTDRNGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNRPVILNLYSA 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L A+++  +EV +    Y L K + R  ++ G        DEV+ +I+ S N +      
Sbjct: 361 LIAYLSHLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKK----- 415

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                  +        SE+Q  AI ELRL +L+ + + + + E 
Sbjct: 416 --------------------GVILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEK 455

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVR 535
            +L I+I+ C  +L+ +      + ++LL +K++   PR T I +  +D E +       
Sbjct: 456 KNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKN 515

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED  + ++  GY K++ L VY +            +++ED V     V++ + +LFF++L
Sbjct: 516 EDFYLYITKDGYYKKISLKVYTSNELS-----TFKLKEEDNVFYFDKVNSLSKILFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +          + +  G+ + +I++L   E+I  ++   E  S  N    +  +K G
Sbjct: 571 GNYFIIDCHLFKDCNWKDLGQHISSIVALESSEKIIRVI---EITSFNNYANFILMSKLG 627

Query: 656 NVRRNKLSDFIQIN--RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
             ++  L DF   +  ++       D  DE++  +    E  + +    G       + +
Sbjct: 628 YAKKVNLRDFENKSSLKTKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSENEL 687

Query: 714 RVFAGRNSVGVR 725
           +V     + G+R
Sbjct: 688 KVGISLKARGIR 699


>gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 771

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 247/742 (33%), Positives = 363/742 (48%), Gaps = 77/742 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK----KYVKC 74
           +++ D  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +N     K VK 
Sbjct: 16  LTLADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGAKPVKS 75

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+G+YHPHG+ A YDA+ RMAQD+S R  L++GQGNFGS DGD  AA RYTE R
Sbjct: 76  ARVVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEAR 135

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LLD++ + TVDF+PNYDGS QEP  L AR P VL+NG  GIAVG+AT IP+HN
Sbjct: 136 LAPIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATEIPSHN 195

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGV 253
           L EV    V +I +P +  DAL  ++ GPDFP G  I+     I+ AYA+GRGS+ +R  
Sbjct: 196 LREVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSLKVRAR 255

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA---------------- 297
             IE  +  + Q+VV E+P   +   +LE+I EL   K                      
Sbjct: 256 WTIEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQTVLAV 315

Query: 298 --DLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
              +RDES +     ++   +    S   ++  L   TSL+    VN+  +    +P + 
Sbjct: 316 LDAVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADGRPTQK 375

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L+ ++ FR++ V RRT++ L+K  +R HVL G  + + N+DEV+RIIR S  P  
Sbjct: 376 SLRQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRESDEPRA 435

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   L+ R                            LSE Q   IL+LRL +L  L    
Sbjct: 436 A---LIAR--------------------------FNLSERQADDILDLRLRQLARLEAIK 466

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I  EL  L        +IL+S + L   + +E+ +        RRT I E    + +   
Sbjct: 467 IEQELKELRETQARLEEILASPAVLKRTLIREIEADAKACGDERRTLIQEERRAVAEIRV 526

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +      V VS  G+V        RA +     RS +  +  D +   F   +  ++L F
Sbjct: 527 VDEPVT-VVVSQKGWV--------RALKGHEVERSTLGFKAGDALYATFACRSVDTLLVF 577

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
              G VY   V  LP G  +  G  +  ++ L  G  I        D        ++ A 
Sbjct: 578 GDRGRVYSVAVSSLPGG--RGDGVPITTLIELEAGTAIAHYWAGAAD------TTLLLAN 629

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPIS 711
             G     K  D     R+GK  + L++ +  L        + +       G+ + +P+ 
Sbjct: 630 SGGFGLLAKAGDLHGRQRAGKSFLTLEAGERPLEPWAVAAGQTNAACLAADGRLLVYPLD 689

Query: 712 AIRVFAGRNSVGVRGISLAKGD 733
            ++        G RG++L   D
Sbjct: 690 ELKHQPN----GGRGLTLMDVD 707


>gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
          Length = 768

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/754 (30%), Positives = 359/754 (47%), Gaps = 77/754 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLR 300
           +  +  +++VTE+P   N A +L +I E    K                      I  +R
Sbjct: 257 ARGQWRRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVR 316

Query: 301 DESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  I
Sbjct: 317 DESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTI 376

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+      
Sbjct: 377 LQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----- 431

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+E+Q   ILE+RL +L  L    +  EL
Sbjct: 432 ------------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKEL 467

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           N L  E      +L   +    +I +E+ +   +    RRT +VE             E 
Sbjct: 468 NELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEP 526

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + + +S  G++        R++       S    ++ D +       T   V+   S G 
Sbjct: 527 ITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGR 578

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G  
Sbjct: 579 TYSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGGYG 630

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFPIS 711
              KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI 
Sbjct: 631 FIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIG 690

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +++ A     G++ I L  G+ +   A+    +
Sbjct: 691 ELKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 722


>gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 762

 Score =  469 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/757 (31%), Positives = 379/757 (50%), Gaps = 75/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D      I      D +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MTDFRDPFD-----AIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 55

Query: 61  MQMGVEWNK---------------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
             + +E                   Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+S
Sbjct: 56  RLLRMEPGGASPDVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFS 115

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR  L++GQGNFG++DGD  AA RYTE RL +AA  L+  L + TV+FRP Y+G  QEP 
Sbjct: 116 LRTPLVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPE 175

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V    +PN+L NG  GIAVGMAT+IP HN+ E++D    +IDNPD +   LM+++RGPDF
Sbjct: 176 VFPGLFPNLLANGATGIAVGMATSIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDF 235

Query: 226 PTGAVILGRTGIK-NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           PTG V++    I   AYATGRGS   R   H E         VVT+IP+QV K+ ++E+I
Sbjct: 236 PTGGVLVDSASIISEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQI 295

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           A L+ ++++  +AD+RDESD Q   V+    R    D++++ L+R T L++ F +N+  L
Sbjct: 296 AALINDRKLPILADVRDESDEQIRIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVL 355

Query: 345 NGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +  + P    L  +L  ++  + +V+V+R ++ L+K   R  +L G  IA  NLD V+ I
Sbjct: 356 DATRTPRVLGLKPVLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEI 415

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR    P+                                     L++ Q  AIL +RL 
Sbjct: 416 IRTEDEPKEV-----------------------------MMAEFGLNDRQAEAILNMRLR 446

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRT 518
            L  L   ++R E + L  E  + L ++ S +R    +K++L  ++           RRT
Sbjct: 447 SLRKLEEMELRREHSELLKERDDLLKLVESPARQRTRLKKDLADLRKRYSPDSDFGRRRT 506

Query: 519 RIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            + E     ++  E  I +E + V +S  G+++ +         R       +  ++ D 
Sbjct: 507 LVEEAAPAREIPLEAMIEKEPITVILSERGWIRAMSG------HRDLASADTLKFKEGDG 560

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
               F   T   +L  +  G ++     +LP G  +  G  + +++ ++   +I  +MP 
Sbjct: 561 PMIAFHAQTTDKLLLATETGRIFTLGADKLPGG--RGFGDPVRSLVDMDGTGQIVALMP- 617

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
                +     ++ A+  G      ++D I   R GK  + + +  ++  V     + + 
Sbjct: 618 -----ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAADADS 672

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + +  +  + + F +  +   A     GV+      G
Sbjct: 673 VAVVGENRKLLVFSLIEMPRMA--RGQGVQMQRYRDG 707


>gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 719

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 231/698 (33%), Positives = 359/698 (51%), Gaps = 58/698 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+HPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
             MAQ +S R  L++GQGN+G+VD     AA RYTE RL K A  LL +LG+ TVD++PN
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           +DG+ +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ D  V ++DNP   LD L
Sbjct: 121 FDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDEL 180

Query: 217 MEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
             +++GPDFPT A I+  +  I+  Y  GRGSI +R     E       +IV+  +P+Q 
Sbjct: 181 STVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRATWKKEDG-----EIVIRALPHQS 235

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSL 333
           + + ++ +IAE +  K++  + D+RDE+D +    ++ + R      D ++  L+  T L
Sbjct: 236 SPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTDL 295

Query: 334 QSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +  + VNM  +   +KP    L+ IL  +++FR   V RR +Y LNK   R H+L GL I
Sbjct: 296 EKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLMI 355

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A  N+DEV+ IIR    P   + ELM R                            LS+ 
Sbjct: 356 AFLNIDEVIHIIRHEDEP---KAELMAR--------------------------FNLSDE 386

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL LRL  L  L   +++ E   L  E     +IL S  RL  ++K+E+       
Sbjct: 387 QAEAILNLRLRHLAKLEEHELQAEQTELEKERSSLEEILGSERRLNTLLKKEIQQDAKTY 446

Query: 513 DTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
            +PRR+ +VE      + + + +  E + V +S +G+V+         Q        G+ 
Sbjct: 447 ASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQ--------GLS 498

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D         ++ + +F  S G  Y      LP  S +++G+ L   L+L  G  I
Sbjct: 499 YKAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLMLP--SARSQGEPLTGKLTLPAGATI 556

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             ++   ED+       ++ A+  G     K +D I  N++GK  + L    ++L   T 
Sbjct: 557 DQLLIENEDQP------LLMASDAGYGFICKFADLIARNKAGKALISLPENAKVLPPLTL 610

Query: 691 TQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                +L+  T  G+ + FP   +   +      +  I
Sbjct: 611 KNSTALLVALTSAGRMLIFPAQDLPELSKGKGNKIVTI 648


>gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 746

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 239/744 (32%), Positives = 364/744 (48%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E        +   I   S  D + + YL YA++ I  RA+PD RDGLKPVHRR+L+ M
Sbjct: 1   MGEQF----PGDGGRIFDESFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  +  + KCAR+ G+V+G++HPHG+ A+Y+AL R+AQD++ R  L+EGQGNFG+V
Sbjct: 57  RLLKLSPDTAFKKCARVVGDVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL +AA  +L D  + TVDFR  YDG  +EP+VL A +PN+L NG  
Sbjct: 117 DGDGAAAMRYTEARLTEAAILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMATNIP HN  E+ D    +I  P    + L+  ++GPDFPTG V +  R  I  
Sbjct: 177 GIAVGMATNIPPHNAAELCDAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R    +E+    + QIVVTEIPY V KA ++E+IA L+ +K++  +AD+
Sbjct: 237 AYETGRGGFRLRARWEVEELGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      ++    R     +++  +++ T L+  F++N+  L+    P    L   L
Sbjct: 297 MDESAEDVRLILEPKSRTIDPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEAL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R  VVVRR    L    DR  VL G  +A  NLDEV+RIIRF  +P+       
Sbjct: 357 QIWLDHRRVVVVRRATTRLEHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHPKD------ 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L++ Q  AIL +RL  L  L   +IR+E +
Sbjct: 411 -----------------------ELIKTFSLTDRQAEAILNMRLRSLRKLEEMEIRDEQS 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRI----VEGLLDMED 529
            L  E  E   +++  S     +  E+  VK           RRT         L DM +
Sbjct: 448 RLEGERDELNALIADESLQWKKVDSEVADVKKRFGPNTELGKRRTTFADAPAADLADMVE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + + +S +G+V        RA +      +G+  +D D         T   +
Sbjct: 508 EALIPREPITIVLSRMGWV--------RALKGHTDDVTGIKHKDGDETAFSLKAETTDKI 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G VY     +LP G  +  G+ +  ++ +++      +  +  D        ++
Sbjct: 560 LMLTTDGRVYTLDASKLPGG--RGFGEPVRLLIDMDESAEPVALFKYSPDRK------LL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G+       +   I R+G+  + +    + +        + I +  +  + + F 
Sbjct: 612 LASTSGHGFVVAEKELPAIKRAGRQVLNVIDGHKAMMA-LPMTGDRIAVLGENKKLLVFA 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKGD 733
              I         GVR +    G+
Sbjct: 671 ADEIPEMV--RGKGVRLLGGKAGE 692


>gi|254417301|ref|ZP_05031045.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175954|gb|EDX70974.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 748

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 256/836 (30%), Positives = 401/836 (47%), Gaps = 128/836 (15%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYD 158
           M Q++S R  L+ G GNFGSVD DPPAA RYTE RL   +H  L  ++G+ TVDF  N+D
Sbjct: 1   MVQEFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPISHEALLSEIGEATVDFIDNFD 60

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS QEPVVL A+ P +L+NG  GIAVGMATNIP HNLGE+VDG +A+ID PD+  + L +
Sbjct: 61  GSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGEIVDGLIALIDRPDLADEKLWK 120

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ------IVVTEIP 272
           +I GPDFPTG  I+  +GI++AY++GRG I +RG++ +E+    R +      ++VTE+P
Sbjct: 121 LIPGPDFPTGGEIIDTSGIRDAYSSGRGIIPVRGIAKVEEIQVGRTRRHRRTALIVTELP 180

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKAA +EKIA+LV   R+  IADLRDESDR+G RVV+ELKR A    +L  LY+ T 
Sbjct: 181 YQVNKAAWIEKIADLVNHGRLDGIADLRDESDRRGMRVVVELKRDAHPRDVLKHLYKQTP 240

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS F   M+AL   +P +  L   L+ F+ FRE+ + R+  Y L++ R R H++ GL +
Sbjct: 241 LQSNFGAIMLALVNGQPRQLALRQCLEEFLRFREQTLTRQYTYELDQKRQRRHLVEGLLV 300

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            +  L  V+ I+  +P+  TA+ +  ++                          + LSE 
Sbjct: 301 CLNQLTRVIEILTNAPDGTTAKTQFQEQ--------------------------LNLSES 334

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL + + RLTGL R  ++ E   L   I+   ++LSSR  LL  +K+EL S+K + 
Sbjct: 335 QADAILAMPMRRLTGLERQKLQTEFEELTARIETLQELLSSRHELLKTLKKELRSLKRKY 394

Query: 513 DTPRRTRIVEGLLDMEDEDCIVR------------------------------EDMVVTV 542
             PRRT+I       E +                                   E  V+  
Sbjct: 395 ADPRRTKIRSAQSLKEPKQPKSEKQTRKKAKTSDTPKTSASKSPSPNLIETEAEQTVLEF 454

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++ G+V+R+  +     +   K          DFV      +T +     +S G  Y  K
Sbjct: 455 TYQGHVQRLRSAPDPKSKPSIKD-------GNDFVIQTQQTTTASEFATLTSGGKAYPLK 507

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  +P  + + +G  +  +L  +  +  T I  F   E +  ++ ++  T+ G V+R   
Sbjct: 508 VQDIPPAAGRKQGIPVTRLLP-DAAQSETVIAHFRPHELT-ESVSLILLTQQGRVKRLPA 565

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNS 721
           ++ + +   G   +KL   D +  V      +D+++ T  G+ +RF I+       GR +
Sbjct: 566 TELLNLTARGLTTVKLKEEDVLAYVTLAQSTDDLIIATSNGRLLRFEINDQNLPIMGRTA 625

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G + + L + +Q++    +   +                                    
Sbjct: 626 QGNQALRLRRREQLVGCVAIAPNEN----------------------------------- 650

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L VSE+G+GKR      R   R   G +A           L
Sbjct: 651 ------------------LLLVSEQGYGKRIGLGVVRRIKRGDLGTQALQFKTS--TDRL 690

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + V   +  +  +L++    ++ V +  +++  +   G  +     +E ++ V  I
Sbjct: 691 IGVINASQTETAVLLTSDERVMTVSLKSVKLLGKDGCGDRLVKLKSNETIIDVTTI 746



 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 90/269 (33%), Gaps = 59/269 (21%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
           P P    +     V+  T  G+V+R + +   +   S K     D  D ++  +  T  +
Sbjct: 438 PSPNLIETEAEQTVLEFTYQGHVQRLRSAPDPKSKPSIK-----DGNDFVIQTQQTTTAS 492

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +    T  G+     +  I   AGR   G+    L                         
Sbjct: 493 EFATLTSGGKAYPLKVQDIPPAAGRK-QGIPVTRL------------------------- 526

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                               L + +  E  I+  R  EL      IL  +++G  KR  +
Sbjct: 527 --------------------LPDAAQSETVIAHFRPHELTESVSLILL-TQQGRVKRLPA 565

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRI 872
            +  + N + +G+    + + +    L  V      D +I+ +  G L+R  +N+  + I
Sbjct: 566 TE--LLNLTARGLTTVKLKEED---VLAYVTLAQSTDDLIIATSNGRLLRFEINDQNLPI 620

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901
             R  +G       + E++V    I  +E
Sbjct: 621 MGRTAQGNQALRLRRREQLVGCVAIAPNE 649


>gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 748

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 239/744 (32%), Positives = 398/744 (53%), Gaps = 63/744 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY K AR 
Sbjct: 8   SISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSKYKKSART 67

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQ 136
            G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D     AA RYTE +L 
Sbjct: 68  VGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLT 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A+ L+ +L   TVD++PN+DGS  EPV+  A+ P +L+NG  GIAVGMAT+IP+HN+ 
Sbjct: 128 NFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATDIPSHNIN 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           EV+D  V +++ P  DL  L++II+GPDF   A I+     ++  Y++GRG   I+    
Sbjct: 188 EVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGFKIQAQW- 246

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
                 D+ QI++  +PYQ + + +LE+IAE +  K++  + DL DE D +    ++   
Sbjct: 247 ----MQDKNQIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDPIRLVITL 302

Query: 316 RGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           +    +A+ ++N LY  T LQ  + VNM  ++    P+ F+L+ +LK +V FR++ + R+
Sbjct: 303 KSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWVIFRKDTLKRK 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L++  DR H+L GL     +LD+V++IIR S  P   ++EL++             
Sbjct: 363 LEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEP---KKELIK------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AILE+RL +L  L +  I NE N L  E  +   IL 
Sbjct: 407 -------------AFKLSEIQANAILEIRLRQLAKLEQLKIENERNELVNERDDIEKILK 453

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S+SRL  +IK EL  +K+     R++ I+         +E+ IV E + V +S  G+V  
Sbjct: 454 SKSRLKTLIKNELNEIKELFGEERKSPIINSTNAKIFSEEETIVTEPITVVLSKAGWV-- 511

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R+ +      + +  R +D + D     ++   +F  S G  Y  +   LP  S
Sbjct: 512 ------RSAKGHEIDPNTLSYRGDDSLQDFARGRSNQLAIFLDSNGKAYSIQSHSLP--S 563

Query: 611 PQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            +  G+ +   L+ + G + I++++          N +++  T  G    ++  + I   
Sbjct: 564 ARGMGEPITGRLNADSGVQFISSVIGV------EGNKFLIMNTA-GYGYISEYQNMISNK 616

Query: 670 RSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI- 727
           ++G+  MKL    ++L        +  I   + +G+ + F I  + +        +  I 
Sbjct: 617 KTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSNIGKLLIFNIEELPILGKGKGNKIINIP 676

Query: 728 --SLAKGDQVISMAIVLHADADYD 749
              LA G++ ++ A +L  D+   
Sbjct: 677 KDKLAAGEEFMAHAQLLADDSSLK 700


>gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 812

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 247/806 (30%), Positives = 367/806 (45%), Gaps = 113/806 (14%)

Query: 1   MTEHI---ISSDEEEEKGITS------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           MT+     +  D  E  G         +++    Q +YL YA++V+ GRA+PD+ DGLKP
Sbjct: 1   MTDQTTLDLIPDPAEPTGPVPPGDDGELNLATYAQRAYLEYALSVVKGRALPDVCDGLKP 60

Query: 52  VHRRILFGMMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           V RRIL+ M +MG+ +         K VK AR+ G+V+G++HPHG+ + YDAL RMAQD+
Sbjct: 61  VQRRILYSMGRMGLGFGGANGNAGAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDF 120

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R  L++GQGNFGS DGD  AA RYTE RL K    LLD++ + TVDF+PNYDGS +EP
Sbjct: 121 SQRYPLVDGQGNFGSRDGDGAAAMRYTEARLAKITTLLLDEIDQGTVDFQPNYDGSTEEP 180

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
             L AR P  L+NG  GIAVG+AT IP+HNL EV D CVA+I N  +  D L  +I GPD
Sbjct: 181 KQLPARLPFSLLNGASGIAVGLATEIPSHNLREVADACVALIKNDKLSDDELFTLIPGPD 240

Query: 225 FPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           FP G  I+   + I +AY +GRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+
Sbjct: 241 FPGGGQIISSASDIADAYRSGRGSLKVRARWKIEDLARGQWQLVVTELPPGVSSQRVLEE 300

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS--------------------ADVI 323
           I EL   K       L  E  +    ++  L                            +
Sbjct: 301 IEELTNPKVKAGKKALSQEQTQLKASILSVLDVVRDESNKDALVRLVFEPKSRTVEQQEL 360

Query: 324 LNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +  L  +TSL++   +N+  +    KP + +L  +L  +VAFR   + RR+++ L K  D
Sbjct: 361 ITALLAHTSLETSSPINLTMVGLDGKPVQKSLRQMLVEWVAFRASTIERRSRHRLGKVLD 420

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H+L G    + N+DEV+ IIR S  P+ A   L+ R                      
Sbjct: 421 RIHILEGRQTVLLNIDEVIAIIRNSDEPKAA---LIAR---------------------- 455

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 LS+ Q   ILE+RL +L  L    I  EL+ L  E  +  +IL S + L  ++ 
Sbjct: 456 ----FNLSDRQAEDILEIRLRQLARLEAIKIEQELSELRTEQGKLEEILGSPAALRRLMV 511

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +E+ +        RRT I      + +   +      V VS  G+V        RA+   
Sbjct: 512 KEIEADAKVFADARRTLIQAEKKAVAEVKVVDEPVT-VVVSEKGWV--------RARTGH 562

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G   S    +  D +   F   T  ++L F S G +Y   V  LP G  +  G+ +  +L
Sbjct: 563 GHEASTFAFKAGDGLYGTFECRTVDTLLVFGSNGRIYTVPVSALPGG--RGDGQPVTTLL 620

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L  G +I      P       +         G      + +     ++GK  + +   +
Sbjct: 621 ELEGGTQILYYFAGPSSAQLLLSS------SGGYGFIASVENMTSRQKAGKAFVGVGEGE 674

Query: 683 EILSVETCTQEN----------------------------DILLTTKLGQCVRFPISAIR 714
              +    +                                +   +  G+ + F I+ ++
Sbjct: 675 TPCAPSVVSGAQGKVTFAGKEGSTAPGAAGAQATLLAPATHVACASTGGRILTFEITELK 734

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAI 740
             A     G+  I L   D +   A 
Sbjct: 735 TMA-NGGRGLMLIDLEAKDTLAGAAA 759


>gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
 gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
          Length = 737

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 247/746 (33%), Positives = 380/746 (50%), Gaps = 62/746 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +IDNP   ++ +M  I+GPDFPTG +I+ +T  I  AY TGRGS  +
Sbjct: 182 PHNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  I+ +RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRLV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    R     +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ ++
Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ YLLNK + R  +L  L I   NLDE++ IIR    P+T                 
Sbjct: 362 TRRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEPKTI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              +SE+Q   IL  RL  L  L    I +E ++L  +      
Sbjct: 406 -------------IMERFKISEIQVEVILNTRLRALQKLEEHAIIDEHSNLQKQQAILEK 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL +   L  I+K+E+ SV+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILKNHKELWKIVKKEIKSVQTQFGLNTIIGARRTSFEEVDLTNQVIDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G++        R  +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWI--------RLLKGHNTDLSTIKYKEGDAEKFIIEAYTTDKILIISSKGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
               +     + +G A+   L ++ G   IT I+ +   +       ++ A+  G     
Sbjct: 565 LADNIS----KGKGTAVSIKLLVDIGNNDITNILVYKPYQ------LLLLASSIGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ I   ++GK  M +      ++       N I    +  + + F I+ I     + 
Sbjct: 615 NSNEVIAQTKAGKQIMNIPEGYACITCLPVNG-NSIACINESRRLLIFNINEIPEM--KK 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADA 746
             GV      K  +++ + I    D 
Sbjct: 672 GQGVVLQRF-KNAKLLDIKIFNKEDG 696


>gi|331001825|ref|ZP_08325347.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412799|gb|EGG92182.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 745

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 240/739 (32%), Positives = 402/739 (54%), Gaps = 30/739 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  ++ + K
Sbjct: 3   EKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELRIFSDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + LI+G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALIDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K    +       TVDF  NYD + +EP VL  R PN+L+NG  GIAVGM+T+IPTH
Sbjct: 123 KLAKFTEEVYLKDLDKTVDFISNYDETEKEPAVLPVRVPNLLINGAEGIAVGMSTSIPTH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV + C+A I N +ID   L+EI+ GPDFPTG +I  +  + + Y TG G + IRG 
Sbjct: 183 NLLEVCNTCIAYIKNRNIDTKGLLEILHGPDFPTGGIIANKKDLFDIYDTGNGKLKIRGK 242

Query: 254 SHIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E  +   D+++++++EIPY +        L  +A LV  K++ D+ D+ ++SD+ G 
Sbjct: 243 IEVELGRKKSDKDKLIISEIPYTMIGAGINKFLVDVANLVESKKLSDVVDISNQSDKNGT 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+ A  + I N LY+ T L+  F VNM+A+   +PE  +L  ILK ++ F+ E+
Sbjct: 303 RIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIVDGRPEILSLRDILKNYLDFQYEI 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             ++   LLNK  ++  +  GL  AV  +D ++ I+R S N   A++ L+       + K
Sbjct: 363 TTKKYNILLNKELEKKEIQEGLIRAVDVIDIIIAILRGSKNLTQAKKCLISGDTTGINFK 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                 D           +  +E Q +AIL++RL +L GL  + +  +  +    I++  
Sbjct: 423 VKTFEKDAK--------KLSFTEKQAQAILDMRLYKLIGLEIEALLKDNAATLKNIEDYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL     +  +  ++L  +K +    R+T I +    +  E+ +  E+++  +   GY 
Sbjct: 475 NILKDHKNMDKLFIKDLEKIKRDFALQRKTLIEDAKEAIYIEEPLASEEVIFVMDKFGYC 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K     VY    RG   ++   +  E+    +F V     V  FS+ G +YK KV  LP+
Sbjct: 535 K-----VYD---RGTFDKNAQAVESEN--IYVFPVMNTDKVCIFSNTGILYKIKVIDLPL 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + N+   +       ++   ED    N+  ++  TK G +++    +F   
Sbjct: 585 SKLRDKGTPIDNLTKFDSSTEEI-LLAVSEDSMRGNS--ILMLTKKGFIKKVSCEEFKTN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N+    + KL + D +++V+  +     DI + +  G  +RF IS +  F  +++ G + 
Sbjct: 642 NKQ-VASTKLTNDDVLIAVKMISSGINTDIFIISDAGYILRFNISEVNEF-KKSTRGEKA 699

Query: 727 ISLAKGDQVISMAIVLHAD 745
           ++L   + +  + ++    
Sbjct: 700 MTLGYNEYIKELYLLNDTG 718



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E  ++   IL +++KGF K+ S  +F+ +N   K + +T ++  + + A+  +     N 
Sbjct: 613 EDSMRGNSILMLTKKGFIKKVSCEEFKTNN---KQVASTKLTNDDVLIAVKMISS-GINT 668

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            I ++SD G ++R  ++E+    ++T+G    +   +E +
Sbjct: 669 DIFIISDAGYILRFNISEVNEFKKSTRGEKAMTLGYNEYI 708


>gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 751

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 243/744 (32%), Positives = 376/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L  G  P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P+      M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWD-------------------------LTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +LSS  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIETLLSSDDKQWQTVAWEIGEVKKKFAKATEIGRRRTQFADAPETDEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  I+ ++  + + T                + 
Sbjct: 564 ILTTGGKAFTLGGDKLPGG--RGHGEPLRIIVDMDNDQAVLTAFVHDPSRKQ------LI 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  GN      ++ +   R GK  M   L    ++L        + + +  +  + + F
Sbjct: 616 VSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLL---VPVSGDHVAVVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P++ +   +     GVR      G
Sbjct: 673 PLAQVPEMS--RGKGVRLQRYKDG 694


>gi|269219416|ref|ZP_06163270.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211209|gb|EEZ77549.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 558

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 228/588 (38%), Positives = 331/588 (56%), Gaps = 42/588 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + +  + +T EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M QMG+  ++
Sbjct: 6   EPSAEKVIDIDVTQEMRTSFLEYSYSVIYARALPDARDGLKPVQRRILFQMGQMGLRPDR 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK +R+ G+VMG+ HPHG+ AIYDA+ R+AQ ++LRL +I+G GNFGS+D D PAA R
Sbjct: 66  GHVKSSRVVGDVMGRLHPHGDVAIYDAMVRLAQPFTLRLPMIDGHGNFGSLD-DGPAAPR 124

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+  AA  ++  L +DTVD  PNYD + ++P VL A  PN+LVNG  GIAVGMATN
Sbjct: 125 YTEVRMAPAAMAMISSLDEDTVDMAPNYDNTLEQPEVLPAAIPNLLVNGSSGIAVGMATN 184

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EV+     ++ NPD DL+ +M  + GPD P G  I+G  GI+ AYA+GRG   
Sbjct: 185 MPPHNLVEVIAAARCLLANPDADLEEIMRFVPGPDLPEGGKIVGLEGIREAYASGRGIFK 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
            R  +HIE  +  ++ IV TE+PY V    ++EK+ + +  K++  +  +++ +DR    
Sbjct: 245 TRATAHIENVTARKKGIVFTELPYLVGPEKVIEKLKDAINAKKVQGVTGIQNLTDRHHGM 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+K G + + +L QLYR+T L+  F +N VAL G +P+   LI +L+ F+  R +V
Sbjct: 305 RLVVEVKNGFNPEAVLLQLYRHTPLEDSFGINNVALVGGQPQTLGLIELLRVFLDHRLDV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR+++ L+KA    H++ GL  AV N+DEV+ +IR S +  TAR  LMQ         
Sbjct: 365 TRRRSRFRLDKASRELHLVDGLLAAVVNIDEVIALIRSSDDAATARTRLMQ--------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q   ILELRL RLT     ++    + L   I +  
Sbjct: 416 -----------------VFDLTEPQAEYILELRLRRLTKYSVIELEQRRSELLEAIADLE 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------EDCIVREDMVVTV 542
           D+L+S  RL  ++  EL  V     TPRRT ++E     E          +  +   V +
Sbjct: 459 DVLNSPERLRDLVSAELDEVARAHGTPRRTVLLESDGATEAGSSAALPLEVADDPCFVLL 518

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           S  G   R   S   A R G +G         D +      +    + 
Sbjct: 519 SGTGLAARTADSSPPA-REGERG-------PHDAILACVPATARGQIR 558


>gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 751

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 240/744 (32%), Positives = 375/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L  G  P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+      M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEPKPV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L+++Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWD-------------------------LTDIQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + + T                + 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQ------LI 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  GN      ++ +   R GK  M   L    ++L        + + +  +  + + F
Sbjct: 616 VSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLL---VPVSGDHVAVVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P++ +   +     GVR      G
Sbjct: 673 PLAQVPEMS--RGKGVRLQRYKDG 694


>gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
 gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
          Length = 761

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/799 (29%), Positives = 382/799 (47%), Gaps = 84/799 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++ +    + +YL YA++V+ GRA+P ++DG KPV RRIL+ M  MG+  N K VK AR
Sbjct: 6   DTLDLAAYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GE++GKYHPHG+++ Y+A+ RMAQ+++LR  LI+G GNFGS DGD  AA RYTE RL 
Sbjct: 66  VVGEILGKYHPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLS 125

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL ++ + TVDF PNYDG+ +EPV+L AR P VL+NG  GIAVGMAT IP+HNL 
Sbjct: 126 PIADLLLSEIQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLT 185

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSH 255
           E+    +A++ NP+++   LM  +  PDF  G  I+     ++  Y TG+GS+ +R    
Sbjct: 186 EITQAAIALLKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYE 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IA 297
           I+K +  + +++V+E+P   + A +L +I E    K                      I 
Sbjct: 246 IDKMARGQWRVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIE 305

Query: 298 DLRDESDRQGYRVVIELKRGAS--ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
            +RD+SD +    +I   + +       +N L   T L+   SVN+V +    +P +  L
Sbjct: 306 KVRDDSDGEHPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNL 365

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ +R   V RR ++ LN    R H+L G  IA  ++DEV+R+IR +  P+   
Sbjct: 366 KTILQEWLDYRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKA-- 423

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE+Q   ILE+RL +L  L    + 
Sbjct: 424 ---------------------------DLMANFSLSEIQAEDILEIRLRQLARLEGIKLE 456

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           NELN L  E      +L   +     I +E+ +   +    RRT +VE            
Sbjct: 457 NELNELREEQSSLHTLLGDENAKKKHIIKEMQADAKQFGDARRT-LVEAAERATLTQTTA 515

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + + +S  G++        RA+       +  V ++ D +  +    T   V+    
Sbjct: 516 DEPVTLILSQKGWI--------RARSGHDVDIAQTVFKEGDGLQQILPARTVQPVIVLDD 567

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      +P G  +  G  L +++ +    +I +++      +     + + A   
Sbjct: 568 SGRSYTINPADIPKG--RGDGVPLASLIDMPANAQIVSML------TGEPEDHYLLANSG 619

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRF 708
           G     KL       ++GK  M LD+ + +L             +  I+L T   + + F
Sbjct: 620 GYGFICKLEHLHSRLKAGKTVMTLDNGETVLPPVCVHLSSLINPDCKIMLATAHNRLLAF 679

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +++ A     G++ ISL +GD+V  + ++  AD        Y   +  +R  IS +
Sbjct: 680 PLGEMKIMA--KGRGLQMISLQEGDRVQRLNVLSSAD--------YRLTIVGKRGGISHE 729

Query: 769 TEEITSLKNDSSVEGNISE 787
           T  I  +      +G I +
Sbjct: 730 TLHIADITQKRGRKGKILD 748


>gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
 gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
          Length = 762

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/757 (31%), Positives = 377/757 (49%), Gaps = 75/757 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D      I      D +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MTDFRDPFD-----AIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 55

Query: 61  MQMGVEWNK---------------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
             + +E                   Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+S
Sbjct: 56  RLLKMEPGGASPDVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFS 115

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR  L++GQGNFG++DGD  AA RYTE RL +AA  L+  L + TV+FRP Y+G  QEP 
Sbjct: 116 LRTPLVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPE 175

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V    +PN+L NG  GIAVGMAT+IP HN+ E++D    +IDNPD +   LM I+RGPDF
Sbjct: 176 VFPGLFPNLLANGASGIAVGMATSIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDF 235

Query: 226 PTGAVILGRTGIK-NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           PTG V++    I   AYATGRGS   R   H E         VVT+IP+QV K+ ++E+I
Sbjct: 236 PTGGVLVDSPSIISEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQI 295

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           A L+ ++++  +AD+RDESD     V+    R    DV+++ L+R T L++ F +N+  L
Sbjct: 296 AALINDRKLPILADVRDESDELIRIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVL 355

Query: 345 NGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +  + P    L  +L  ++  + +V+V+R ++ L+K   R  +L G  IA  NLD V+ I
Sbjct: 356 DATRTPRVLGLKPVLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEI 415

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR    P+                                     L++ Q  AIL +RL 
Sbjct: 416 IRTEDEPKEV-----------------------------MMAEFGLNDRQAEAILNMRLR 446

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRT 518
            L  L   ++R E + L  E  + + ++ S +R    +K++L  ++           RRT
Sbjct: 447 SLRKLEEMELRREHSELLKERDDLIKLVESPARQRTRLKKDLADLRKRYSPDSDFGRRRT 506

Query: 519 RIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            + E     ++  E  I +E + V +S  G+++ +         R       +  ++ D 
Sbjct: 507 LVEEAAPAREIPLEAMIEKEPITVILSERGWIRAMSG------HRDLASADTLKFKEGDG 560

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
               F   T   +L  +  G ++     +LP G  +  G  + +++ ++   +I  +MP 
Sbjct: 561 PMIAFHAQTTDKLLLATETGRIFTLGADKLPGG--RGFGDPVRSLVDMDGTGQIVALMP- 617

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
                +     ++ A+  G      ++D I   R GK  + + +  ++  V     + + 
Sbjct: 618 -----ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAPDADS 672

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + +  +  + + F +  +   A     GV+      G
Sbjct: 673 VAVVGENRKLLVFSLIEMPRMA--RGQGVQMQRYRDG 707


>gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7]
          Length = 745

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/739 (31%), Positives = 385/739 (52%), Gaps = 55/739 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYTE  
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           L EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R  
Sbjct: 185 LHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
            H          +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+VI
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           ELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ VV+
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R          
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR---------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AIL+++L +L  L   ++  E + L  E     + 
Sbjct: 410 ----------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLISEQ 453

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  ++  EL +        RR+ +V+      ++  D I  E +   +S  G++
Sbjct: 454 LNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      + +  R  D      +  +   ++   + G  Y      LP 
Sbjct: 514 --------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHLP- 564

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++    
Sbjct: 565 -SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLDTA 620

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTT-KLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +SGK ++ L     +L +     ++ ++  +   G  + F    +   A     G +  
Sbjct: 621 QKSGKSSINLADG-VLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKLA 677

Query: 728 SLAKGDQVISMAIVLHADA 746
           +L  G+ + ++  +   DA
Sbjct: 678 NLKAGETITAITALSDTDA 696


>gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1]
 gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1]
          Length = 749

 Score =  467 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 379/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +      +++ I S+ +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLP--FDKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +     Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ++++R  L++GQGNFG++
Sbjct: 59  RLLKLNPGHSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +P+   + L   + GPDFPTG +++  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  +     +VVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRVGRGFFRLRSRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIGIL 358
           RDES      V+I   R    ++++  L++ T  +  F +N  V   G  P   +L   L
Sbjct: 299 RDESAEDIRIVLIPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R+EV++RR++Y L++   R  +L G  I   NLDEV++IIR    P   +++L+
Sbjct: 359 KQWLEHRQEVLIRRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEP---KKKLI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 416 DR--------------------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG---LLDMEDE 530
           +L  E ++  ++L SR++   II +E++ V+           RRT   E      D   +
Sbjct: 450 TLRAEKEKLQNLLDSRTKQWKIISEEIIKVRKVFGPHTLLGKRRTTFEEAPRHDFDDIYQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +      + +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLSDYNALSFKEGDCLKLAFPAFTTDKIV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ ++    + T       E       ++ 
Sbjct: 562 VISTGGKFFAIAANSLPGG--RGHGEPIRILVDMDDEHDLLTAFVHHTQEK------LLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + HGN      ++ I   R GK  M +   D++         + + +  +  + + F I
Sbjct: 614 VSSHGNGFIVPATEVIANTRKGKQVMNVKFPDKVKLCVPVKG-DHVAVVGENRKMLIFAI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I   +     GVR     +G
Sbjct: 673 EQIPEMS--RGKGVRLQRYKQG 692


>gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse]
 gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse]
          Length = 749

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 229/742 (30%), Positives = 381/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +      +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLP--FDKEHIEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLKLNPEQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +PD + + L + + GPDFPTG +++  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  S     I+VTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRIGRGFFRLRSRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L+ G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R++V++RR+ Y LN+   R  +L G  IA  NLDEV++IIR    P   ++EL+
Sbjct: 359 QQWLEHRQQVLIRRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  AIL +RL  L  L   +IR E +
Sbjct: 416 NC--------------------------FELTENQAEAILNMRLRSLHKLEEFEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG---LLDMEDE 530
           +L  + ++  ++L+S ++   +I +E+  V+           RRT   E     +D   +
Sbjct: 450 ALKADKEKLQNLLASSTKQWKMISEEIRKVRKIFGPETLLGKRRTTFEEAPRHAIDDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA R        +  ++ D +   F   T   + 
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALRGHLSDYKALSFKEGDCLKLAFPAFTTDKIT 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ ++    I T      +E       ++ 
Sbjct: 562 MISTGGKFFCINANDLPGG--RGHGEPIRILVDMDDEHDILTAFVHNVEEK------LLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      ++ I   R GK  M +   D++  +    + + + +  +  + + F I
Sbjct: 614 ISSYGNGFIVPATEVIANTRKGKQVMNVKFLDKV-KLCIPVKGDHLAVIGENRKMLIFAI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I   +     GVR     +G
Sbjct: 673 EQIPEMS--RGKGVRLQRYKEG 692


>gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 448

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 241/473 (50%), Positives = 335/473 (70%), Gaps = 26/473 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+
Sbjct: 1   MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR
Sbjct: 241 GSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  +
Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R     
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                  LSE Q +AIL++RL RLTGL R+ I   + 
Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQNIK 447


>gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
 gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
          Length = 768

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 256/768 (33%), Positives = 380/768 (49%), Gaps = 71/768 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  D E      SV +      +YL YA +V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MEDTELELDFESNSQ-ESVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS 
Sbjct: 60  DRMGLRAGVKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LLD+LG+ TV+F PNYDG   EP +L AR P +L+NG  
Sbjct: 120 DGDGAAAMRYTEARLSPIAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP+HNLGEV + C+A+I NP+I  D L +I+ GPD+ +GA I+ +   +K 
Sbjct: 180 GIAVGMATEIPSHNLGEVANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQ 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y TG+G++ +R     E+ +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 240 IYETGKGTVKVRARWEFEELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSL 299

Query: 299 -----------------LRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSV 339
                            +RDES R+    ++          +  +N L  +TS++   S+
Sbjct: 300 NSEQQNTKSMMLGLLDAVRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSI 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    KP +  L  IL  +V FR E V+ RTKY L +  DR HVL G  I + N+D
Sbjct: 360 NLVCIGIDGKPRQRNLKEILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVD 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+  IR S  P+ A  E                                LS+ Q   IL
Sbjct: 420 EVISTIRNSDEPKPALIE-----------------------------KFNLSDRQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E++L +L  L    I+ EL    +E K+  ++L+S S L   I +E+ S   +    RRT
Sbjct: 451 EMKLRQLAKLEGIKIQQELEDKRLEQKKLENLLNSNSSLKKQIIKEIESDAKKYADARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I        +   +V E + V +S  G+V        RA++  G   S +  +  D + 
Sbjct: 511 LIKHAEKATLE-VKVVDEPVTVIISDKGWV--------RARQGHGVEESALNFKSGDSLY 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             F V T  +++   S G VY   V  LP  S +  G+    ++ L    +I+  +   E
Sbjct: 562 GTFEVRTVDNLIGIGSNGRVYTVPVSSLP--SARGDGQPYSAMIDLESKTQISHYVCAKE 619

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DIL 697
           D     +++++    +G        D +   ++GK  + ++    +L           I 
Sbjct: 620 D-----SVWLLMQ-DNGLGFVTTFKDMVSRIKAGKSFISMEEGANLLRPIPVGSSARYIG 673

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           + +K  + +  PI  I+        G   + L   D++  +  V  + 
Sbjct: 674 MLSKNDRFLIVPIQDIKHLNS-GGRGTILMGLDPKDKISQVVTVTESG 720


>gi|291320112|ref|YP_003515370.1| topoisomerase IV subunit A [Mycoplasma agalactiae]
 gi|290752441|emb|CBH40412.1| Topoisomerase IV subunit A [Mycoplasma agalactiae]
          Length = 861

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/820 (28%), Positives = 399/820 (48%), Gaps = 40/820 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +    I   ++   + + +  Y+  VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKKKEQQLNDLLSKIIRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ G+V+GKYHPHG+ +IYDA+ RM Q+W +   L+E  GN GS+
Sbjct: 61  YDLGLQNNKPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + A++++ D+ K+TV F PN+D S +EPVV+    PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A + NP I+L  L +II+GPDFPTG +I G  GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDAAIAKVKNPAIELSKLAKIIQGPDFPTGGIIYGTDGIHEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  G+G I +     +       + I +TEIPY V K+ ++ +I  +V  + +  + +++
Sbjct: 241 FERGKGRITLASRYSV-YADNKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++DR G  ++I L + A  +VI+N L+  T ++  ++ N V ++ Y P+   +  +L A
Sbjct: 300 DQTDRNGINILITLDKEADENVIVNYLFLKTQMRVYYNYNNVVIDNYTPKTLGISALLDA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   +++ ++  ++ L K R+R  +++G        D+V+ +IR S N +    +    
Sbjct: 360 YLKHVKDIKIKTIEFDLIKHRERLEIVIGFLKVAKISDKVIEVIRKSENSKQGVID---- 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +  Q  AI ELRL +L+         E   L
Sbjct: 416 ---------------------NLMSAFDFTLNQATAIAELRLYKLSKTDEQSFLIEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDM 538
             +IK+C  +L+        +      +K +   PRRT I    +            E +
Sbjct: 455 EEKIKQCELLLNDSDEFNKYLIALFKDLKVKFGRPRRTSIENEQIKASINQEDLVKEEQV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K+V   +Y +        +   ++++D +      S+   +L F++ G  
Sbjct: 515 FLGISKFGYIKKVSKKIYESNL-----INTYGIKEDDNILFYDNASSLDKLLLFTNFGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L + + L  GE + + +   + +SS    YV   TK G  +
Sbjct: 570 AYLPVFKVHESKWKEFGTHLSDFVDLASGEELVSAIKVSDFDSS---NYVCLFTKKGQGK 626

Query: 659 RNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L +F         +AMKL + DE++  +      D+LL TK      +  + + ++ 
Sbjct: 627 KVLLKEFDVSRFSKTFVAMKLKNDDELIGAKISNGLKDVLLITKNNFASLYSENEVPIYG 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S G +   LA  D++ + A+V   D+         K        I+  ++    +  
Sbjct: 687 L-KSNGNKACYLANYDELSAFAVVSSNDS-VVLINANNKAKVVNVSEITKVSKANKGVAL 744

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            +    N   ++C  L+   + IL V+ +G        D+
Sbjct: 745 FAKSRTNSPIKQCDSLQSSSK-ILIVNNQGQAHFEKIQDY 783



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 106/264 (40%), Gaps = 19/264 (7%)

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN--KLSDFIQINRSGKIAMKLDSRDE 683
           + E+I       +++        +  +K G +++   K+ +   IN  G         D 
Sbjct: 495 ENEQIKA--SINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGI-----KEDDN 547

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAI 740
           IL  +  +  + +LL T  G     P+  +   +     G      + LA G++++S   
Sbjct: 548 ILFYDNASSLDKLLLFTNFGNYAYLPVFKV-HESKWKEFGTHLSDFVDLASGEELVSAIK 606

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQF 799
           V  +D D    +C        ++++  + +     K   +++    +E    ++    + 
Sbjct: 607 V--SDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKNDDELIGAKISNGLKD 664

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L +++  F    S  +  I      G +A  ++  +E   L A   V+ ND ++L++  
Sbjct: 665 VLLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDE---LSAFAVVSSNDSVVLINAN 721

Query: 860 GTLIRVPVNEIRIASRATKGVVIF 883
                V V+EI   S+A KGV +F
Sbjct: 722 NKAKVVNVSEITKVSKANKGVALF 745



 Score = 42.2 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 36/237 (15%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR---GISLAKGDQVISMAIVLHAD 745
              +E   L  +K G   +     I      N+ G++    I        +   ++    
Sbjct: 508 LVKEEQVFLGISKFGYIKKVS-KKIYESNLINTYGIKEDDNILFYDNASSLDKLLLFTNF 566

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
            +Y     +  H S  +   +  ++ +     +  V      +          ++   ++
Sbjct: 567 GNYAYLPVFKVHESKWKEFGTHLSDFVDLASGEELVSAIKVSD-----FDSSNYVCLFTK 621

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG GK+    +F +S R  K   A  +   +E   L+     N    ++L++        
Sbjct: 622 KGQGKKVLLKEFDVS-RFSKTFVAMKLKNDDE---LIGAKISNGLKDVLLITKNNFASLY 677

Query: 866 PVNEIRIASRATKG-----------------------VVIFSTAKDERVVSVERIRE 899
             NE+ I    + G                       VV+ +     +VV+V  I +
Sbjct: 678 SENEVPIYGLKSNGNKACYLANYDELSAFAVVSSNDSVVLINANNKAKVVNVSEITK 734


>gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1]
 gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169]
 gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8]
 gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
 gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72]
          Length = 745

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/739 (31%), Positives = 385/739 (52%), Gaps = 55/739 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYTE  
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           L EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R  
Sbjct: 185 LHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
            H          +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+VI
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           ELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ VV+
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R          
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR---------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AIL+++L +L  L   ++  E + L  E     + 
Sbjct: 410 ----------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLISEQ 453

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  ++  EL +        RR+ +V+      ++  D I  E +   +S  G++
Sbjct: 454 LNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      + +  R  D      +  +   ++   + G  Y      LP 
Sbjct: 514 --------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHLP- 564

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++    
Sbjct: 565 -SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLDTA 620

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTT-KLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +SGK ++ L     +L +     ++ ++  +   G  + F    +   A     G +  
Sbjct: 621 QKSGKSSINLADG-VLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKLA 677

Query: 728 SLAKGDQVISMAIVLHADA 746
           +L  G+ + ++  +   DA
Sbjct: 678 NLKAGETITAITALSDTDA 696


>gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4]
 gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4]
          Length = 758

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 242/750 (32%), Positives = 373/750 (49%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   +  +  +T + +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGGD-NVTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D VDFRP Y+    EPVVL   +PN+L NG  
Sbjct: 120 DGDSAAAYRYTEARMTDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME--------IIRGPDFPTGA-VI 231
           GIAVGMAT+IP HN  E+ D  + +I N    ++ L           I GPDFPTG  VI
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVI 239

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             R  +   Y TGRG   +R     E       QIV+T+IP+QV K+ ++EKIAEL+  K
Sbjct: 240 ESRESMLETYRTGRGGFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAK 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPE 350
           R+  + D+RDES      V++   R     +++  L++ + L+S   +NM  L  G  P+
Sbjct: 300 RLPLLEDIRDESAEDVRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPK 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++  R++V+VRR+++ L     R  +L GL IA  NLDEV+RIIR     
Sbjct: 360 VMALNEVLLEWLDHRKDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIREED-- 417

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
             A+  L+ R                            L++ Q  AIL +RL  L  L  
Sbjct: 418 -EAKDALIAR--------------------------FELTDNQAEAILNMRLRNLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---E 522
            +IR E ++L  E  E   +L+S     G I  E+  VK +         RRT      +
Sbjct: 451 FEIRKEHDALSKEKAEIETLLASDDLQWGTIASEIGEVKKKYAKATDIGRRRTLFANAPD 510

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
             +D   +  I +E + V +S  G+++ +    Y         +  +  ++ D +   F 
Sbjct: 511 ADVDAIQQAMIEKEPITVVISEKGWIRALKGHSYD--------KVSLTFKEGDGLRVAFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L  ++ G VY     +LP G  +  G+ +  ++ +   + + T          
Sbjct: 563 AQTTDKILLVTTGGKVYTLGGDKLPGG--RGHGEPIRIMVDMENDQDVLTAFV------H 614

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                ++ A+  GN      SD     R GK  M +   DE   V   +  + + +  + 
Sbjct: 615 DPARKLLIASTGGNGFIVAESDITANTRKGKQVMNVGMPDETKLVVPISG-DHVAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + V FP++ +   +     GVR      G
Sbjct: 674 RKMVVFPLAQVPEMS--RGKGVRLQRYKDG 701


>gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1]
          Length = 745

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/739 (31%), Positives = 385/739 (52%), Gaps = 55/739 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYTE  
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           L EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R  
Sbjct: 185 LHEVVKVCIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
            H          +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+VI
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           ELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ VV+
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R          
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR---------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AIL+++L +L  L   ++  E + L  E     + 
Sbjct: 410 ----------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLISEQ 453

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  ++  EL +        RR+ +V+      ++  D I  E +   +S  G++
Sbjct: 454 LNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      + +  R  D      +  +   ++   + G  Y      LP 
Sbjct: 514 --------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHLP- 564

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++    
Sbjct: 565 -SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLDTA 620

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTT-KLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +SGK ++ L     +L +     ++ ++  +   G  + F    +   A     G +  
Sbjct: 621 QKSGKSSINLADG-VLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKLA 677

Query: 728 SLAKGDQVISMAIVLHADA 746
           +L  G+ + ++  +   DA
Sbjct: 678 NLKAGETITAITALSDTDA 696


>gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1]
          Length = 745

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 230/739 (31%), Positives = 386/739 (52%), Gaps = 55/739 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K A
Sbjct: 5   IDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D     AA RYTE  
Sbjct: 65  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEAN 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 MSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
           L EVV  C+ ++ NP++    L++ +  PD PT A +I  +  +   Y TG+GS  +R  
Sbjct: 185 LHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRAT 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
            H          +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+VI
Sbjct: 245 YH--TDPKQNHLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVI 302

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           ELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ VV+
Sbjct: 303 ELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVI 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+    ELM R          
Sbjct: 363 RRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPKI---ELMTR---------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AIL+++L +L  L   ++  E + L  E     + 
Sbjct: 410 ----------------FGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLISEQ 453

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  ++  EL++        RR+ +V+      ++  D I  E +   +S  G++
Sbjct: 454 LNNPEMLTKLLIDELIADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAGWI 513

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      + +  R  D      +  +   ++   + G  Y      LP 
Sbjct: 514 --------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHLP- 564

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S + +G  + ++L+L  G +I  ++ + +   S N   V+ A+  G    N+L++    
Sbjct: 565 -SARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPN---VLMASSLGYGFINQLANLDTA 620

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTT-KLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +SGK ++ L     +L +     ++ ++  +   G  + F    +   A     G +  
Sbjct: 621 QKSGKSSINLADG-VLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKLA 677

Query: 728 SLAKGDQVISMAIVLHADA 746
           +L  G+ + ++  +   DA
Sbjct: 678 NLKAGETITAITALSDTDA 696


>gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 747

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/747 (31%), Positives = 402/747 (53%), Gaps = 63/747 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +    S+S+    ++SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++ + KY 
Sbjct: 3   KDKFDSISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSKYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D     AA RYT
Sbjct: 63  KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   A+ L+ +L   TVD++PN+DGS  EPV+  ++ P +L+NG  GIAVGMAT+IP
Sbjct: 123 ESKLTSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
           +HN+ EV+D  V +++ P  +L+ L++II+GPDF     +I+    ++  Y++GRG   I
Sbjct: 183 SHNINEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGFKI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYR 309
           +     E     +  I++  +PYQ + + +LE+IAE +  K++  + DL DE D +   R
Sbjct: 243 QAQWKQE-----KNSIIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDPVR 297

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI LK    +A+ ++N L+  T LQ  + +NM  ++    P+ F L+ +LK ++AFR++
Sbjct: 298 LVITLKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKGGPKVFPLVDLLKEWLAFRKD 357

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V R+ ++ L++  DR H+L GL     ++DEV++IIR S  P+                
Sbjct: 358 TVKRKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPKK--------------- 402

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q  AILE++L +L  L +  + +E N+L  E  E 
Sbjct: 403 --------------DLIKAFKLSEIQANAILEIKLRQLAKLEQIKLEDEKNNLDNEQNEI 448

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             +L S++RL  +IK+EL+ +K+     R++ I+E        +ED +V E + V +S  
Sbjct: 449 EKVLKSKARLKTLIKKELIEIKEMFGEERKSPIIESSNAKVFSEEDTLVTEPITVVLSKA 508

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R+ +        +  R +D + D     ++   +F  S G  Y      
Sbjct: 509 GWI--------RSAKGHDIDPHSLSYRGDDNLQDFARGKSNQLAVFLDSNGKAYSIPSHS 560

Query: 606 LPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP  S +  G+ +   L+ + G + I++I+         N  Y++  T  G    ++  +
Sbjct: 561 LP--SARGMGEPITGRLNADSGVQFISSII------GEDNGKYLIMNTA-GYGYISEFKN 611

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                ++G+  MKL    ++L      +++  I   + +G+ + F +  + +        
Sbjct: 612 MTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSNIGKLLIFKLEELPILGKGKGNK 671

Query: 724 VRGI---SLAKGDQVISMAIVLHADAD 747
           +  I    L+ G++ ++ A VL  ++ 
Sbjct: 672 IINIPKDKLSAGEEFMAHAQVLADESS 698


>gi|148377449|ref|YP_001256325.1| DNA topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
 gi|148291495|emb|CAL58881.1| Topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
          Length = 861

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/821 (28%), Positives = 396/821 (48%), Gaps = 42/821 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +    I   ++   + + +  Y+  VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKKKEQQLNDLLSKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ G+V+GKYHPHG+ +IYDA+ RM Q+W +   L+E  GN GS+
Sbjct: 61  YDLGLQNNKPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + A++++ D+ K+TV F PN+D S +EPVV+    PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A + NP I+L  L +II+GPDFPTG +I G  GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGIIYGTEGIHEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  G+G I +    ++  T    + I +TEIPY V K+ ++ +I  +V  + +  + +++
Sbjct: 241 FERGKGRITLASRYNV-YTDSKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++DR G  ++I L + A  +VI+N L+  T ++  ++ N V ++ Y P+   +  +L A
Sbjct: 300 DQTDRNGINILITLDKEADENVIVNYLFLKTQMRIYYNYNNVVIDNYTPKTLGISALLDA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   +++ ++  ++ L K + R  +++G        D+V+ +IR S N +    +    
Sbjct: 360 YLKHVKDIKIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQGVID---- 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +  Q  AI ELRL +L+         E   L
Sbjct: 416 ---------------------NLMSAFDFTLNQATAIAELRLYKLSKTDEHAFLIEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDM 538
             +IK+C  +L+        +      +K +    RRT I    +            E +
Sbjct: 455 EEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRARRTSIENEQIKASINQEDLVKEEQV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K+V   +Y +        +   ++++D +      S+   +L F++ G  
Sbjct: 515 FLGISKFGYIKKVSKKIYESNL-----INTYGIKEDDNILFYDNASSLDKLLLFTNFGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L + + L  GE + + +   + +SS    YV   TK G  +
Sbjct: 570 AYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAIKVSDFDSS---NYVCLFTKKGQGK 626

Query: 659 RNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L +F         +AMKL S DE++  +      D+LL TK      +  + + ++ 
Sbjct: 627 KVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKDVLLITKNNFASLYSENEVPIYG 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGDTEEITSLK 776
              S G +   LA  D++ + A+V   D+          K ++           +  +L 
Sbjct: 687 L-KSNGNKACYLANYDELSAFAVVSSNDSVVLINANNRAKVVNVSEITKVSKANKGVALF 745

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
             S     I +    +   K   IL V+ +G        D+
Sbjct: 746 AKSRTNSPIKQCDSLQASSK---ILIVNNQGQAHFEKIQDY 783



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/264 (18%), Positives = 105/264 (39%), Gaps = 19/264 (7%)

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN--KLSDFIQINRSGKIAMKLDSRDE 683
           + E+I       +++        +  +K G +++   K+ +   IN  G         D 
Sbjct: 495 ENEQIKA--SINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGI-----KEDDN 547

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAI 740
           IL  +  +  + +LL T  G     P+  +   +     G      + L  G++++S   
Sbjct: 548 ILFYDNASSLDKLLLFTNFGNYAYLPVFKV-HESKWKEFGTHLSDFVDLTSGEELVSAIK 606

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQF 799
           V  +D D    +C        ++++  + +     K   +++    +E    +L    + 
Sbjct: 607 V--SDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKD 664

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L +++  F    S  +  I      G +A  ++  +E   L A   V+ ND ++L++  
Sbjct: 665 VLLITKNNFASLYSENEVPIYGLKSNGNKACYLANYDE---LSAFAVVSSNDSVVLINAN 721

Query: 860 GTLIRVPVNEIRIASRATKGVVIF 883
                V V+EI   S+A KGV +F
Sbjct: 722 NRAKVVNVSEITKVSKANKGVALF 745


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/742 (32%), Positives = 379/742 (51%), Gaps = 59/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKDLVPP-SGGDDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 120 DGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+E I GPD PTG VI+  R  I +
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 240 AYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R   A +++  L+R + L+S   +NM  L+ G  P+   L  +L
Sbjct: 300 RDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEVL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A R++V+VRR+++ L     R  +L GL IA  NLDEV+RIIR    P+      M
Sbjct: 360 SEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQV----M 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 416 MARWS-------------------------LTDNQAEAILNMRLRNLRKLEEFEIRKEHD 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---EGLLDMEDE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+     +  ++   +
Sbjct: 451 DLSKEKSEIEGLLASDDKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAIQQ 510

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +      S +  ++ D     F   T   +L
Sbjct: 511 AMIEKEPVTIVISQKGWI--------RALKGHMSDTSALTFKEGDGPKLAFPAQTTDKLL 562

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y     +LP G  +  G+ +  ++ +   + I T            +  ++ 
Sbjct: 563 LLTTGGKAYTLGADKLPGG--RGHGEPIRIMVDMENDQDILTAFV------HDPSRKLLL 614

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  GN      S+ I   R GK  M +   DE       T  + + +  +  + + FP+
Sbjct: 615 VSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTG-DHVAVVGENRKLLAFPL 673

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +   +     GVR      G
Sbjct: 674 SQVPEMS--RGKGVRLQRYKDG 693


>gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8]
 gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8]
          Length = 761

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 227/753 (30%), Positives = 368/753 (48%), Gaps = 71/753 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   ++ ++ EE     +V I +  + +YL YA++V+ GRA+P + DG KPV RRIL+ M
Sbjct: 1   MDTSMLENNNEEN----AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G V+G YHPHG+++ Y+A  R+AQD++LR  LI+GQGNFGS 
Sbjct: 57  KEMGLVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF+ NYDG+FQEPV+L AR P +L+NG  
Sbjct: 117 DGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT I  HN+ E+ +  + ++DNP+      M+ + GPDFP G   I     I +
Sbjct: 177 GIAVGMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADILS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR------- 292
            Y TGRGS+ +R    +E  +  + +I++ E+P+ V+   + ++I  +   K        
Sbjct: 237 TYETGRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKTI 296

Query: 293 -----------IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
                      +  I  ++ E  +    ++       S+D ++  L  +TS++    VNM
Sbjct: 297 DQDQLLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNM 356

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  +I ILK ++AFR  VV RR ++ L+K   R H+L G  IA  ++DEV
Sbjct: 357 VMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEV 416

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +++IR S  P+T                                    LSE+Q   ILE+
Sbjct: 417 IKVIRNSDEPKT-----------------------------DLIAAFQLSEIQAEDILEI 447

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E      IL S ++L  +  +E+    ++    RRT I
Sbjct: 448 RLRQLARLEGFKIEKELKDLREEADGLQTILGSDTKLRRLTAKEIKQDAEKYGDDRRTLI 507

Query: 521 VE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                +    +  +V E + + +S  G++        RA++  G  R  +  +  D    
Sbjct: 508 EPVERVQGGQKAFVVDEPVTILLSKNGWI--------RARQGHGVERDAISWKAGDSEFA 559

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   ++   S G  Y      +P G  +  G  L +I+ +  G ++   +   +D
Sbjct: 560 VIETRTTLPIVLLDSNGRCYAFDASTVPGG--KGDGIPLSSIIEVQNGAKLVHALSGKDD 617

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           +        +FAT +       L   +   ++GK  MK + +  IL          +++T
Sbjct: 618 DR------YLFATSNSYGFIAPLKGLVARPKAGKAFMKPEGKATILPPLALDDRTHLVVT 671

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +   + + F ++ +  +      GVR + +   
Sbjct: 672 SSENKLLVFAVTEMNEYP-NGGKGVRIMDIPDN 703


>gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33]
 gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33]
          Length = 447

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 240/435 (55%), Positives = 317/435 (72%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIGSDGTMY 448
               +         Y
Sbjct: 426 AGTDAARPEWLEPQY 440


>gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW]
 gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum
           SW]
          Length = 757

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 249/746 (33%), Positives = 382/746 (51%), Gaps = 76/746 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I         I    + + +   YL+YA++ I+ R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDAAIE--------ILDKRLAEALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ +E      K AR+ G+V+GK+HPHG+ ++YDAL R+AQ+++ R  L+EGQGNFG++
Sbjct: 53  SQLRLEPTTPPKKSARVVGDVIGKFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNI 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  +L  + +D  DFRP YDG  +EP+VL A +PN+L NG  
Sbjct: 113 DGDNAAAMRYTEARLTEVAKAMLAGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSA 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP---------DIDLDALMEIIRGPDFPTGAVI 231
           GIAVGMATNIP HN+GE+      +I+            + ++ L+  I GPDFPTG V+
Sbjct: 173 GIAVGMATNIPPHNVGEICGALNLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVL 232

Query: 232 L-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           +  R  I  AY TGRG+   R     E  +    QI+VT+IPYQV K+ ++EKIAEL+ E
Sbjct: 233 VESRENILEAYRTGRGAFRTRARWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAE 292

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----G 346
           K++  + D+RDES      V++   R    DV++ Q++R T L++ FS+NM  L+    G
Sbjct: 293 KKLPLLEDVRDESAEDIRLVLVPKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGG 352

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
             P   TL  +L+AF+  R+EV++RR+++ L +   R  VL G  IA  N+DEV+RIIR 
Sbjct: 353 LVPRVMTLYEVLRAFLEHRQEVLLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIRE 412

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
              P   +RELM R                            L++VQ  AIL +RL  L 
Sbjct: 413 EDEP---KRELMAR--------------------------FSLTDVQAEAILNMRLRSLR 443

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV 521
            L   +IR E ++L  E    + +L    +    I +E+  +  +         RRT I 
Sbjct: 444 KLEEFEIRKENDALTKERGVLVGLLEDGHKRWKAISKEVAEMDRKFGRTTALGERRTLIG 503

Query: 522 EGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           E   D  +  E  I RE + V +S  G+++ V         +  +  +G   +D D    
Sbjct: 504 EPPKDLAVPAEAMIEREPVTVFLSEKGWIRTV------RGHQSAQEVAGTKYKDGDRERF 557

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   +L F+  G  Y   V RLP G  +  G+ +  ++ L + E I  ++     
Sbjct: 558 VLHAETTDRLLLFAGSGKFYTLGVDRLPGG--RGFGEPVRLMVDLGEAE-IVALLR---- 610

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                   +V A+  G   + +  D +   R+GK  +        +      + + + + 
Sbjct: 611 --HQPGQRLVVASADGRGFQVEADDVVAQTRAGKQVLTPADGAAAVLAVPA-EGDAVAVI 667

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVR 725
               + + F +  + V       GV+
Sbjct: 668 GNNRKLLVFKLEELPVMT--RGKGVQ 691



 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 14/185 (7%)

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           V   +++  V G     GD+      VLHA+      +           +          
Sbjct: 535 VRGHQSAQEVAGTKYKDGDR---ERFVLHAETTDRLLLFAGSGKFYTLGVDRLPGGRGFG 591

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                 V+   +E          Q ++  S  G G +  + D     R+GK +    ++ 
Sbjct: 592 EPVRLMVDLGEAEIVALLRHQPGQRLVVASADGRGFQVEADDVVAQTRAGKQV----LTP 647

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----DER 890
            +   A++AV    + D + ++ +   L+   + E+ + +R  KGV +         D +
Sbjct: 648 ADGAAAVLAVPA--EGDAVAVIGNNRKLLVFKLEELPVMTRG-KGVQLQKYKDASLSDLK 704

Query: 891 VVSVE 895
           V ++ 
Sbjct: 705 VFALA 709


>gi|227496006|ref|ZP_03926317.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834437|gb|EEH66820.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 519

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 225/523 (43%), Positives = 320/523 (61%), Gaps = 28/523 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   ++    +  I    ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M
Sbjct: 1   MSKSATTTPPPIDGEIVEQDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+
Sbjct: 61  DRMGLRPDRPHVKSSRVVGDVMGRLHPHGDVAIYEALVRLAQPFTMRLPLIDGHGNFGSL 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL   A  L  D+ +DTVDF PNYD +  EP VL A +PN+LVNG  
Sbjct: 121 D-DGPAAPRYTEARLASPALALTADIDEDTVDFSPNYDYTLTEPDVLPAAFPNLLVNGTS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVV     +I +P+  L+ LM  + GPD PTG +I+G  GI+ A
Sbjct: 180 GIAVGMATNMPPHNLVEVVSAARHLITHPEASLEDLMAFVPGPDLPTGGMIVGLDGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  + R  + IE  +  ++ IVVTE+PY V    ++ +I + V  K++  I D+ 
Sbjct: 240 YRTGRGKFLTRATARIENITPRKKGIVVTELPYLVGPEKVIARIKDAVSAKKLQGITDVA 299

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VI +K G + + +L QLY++T L+  F +N V L   +P    L  +L 
Sbjct: 300 DLTDRKNGTRLVIGVKNGYNPEAVLAQLYKHTPLEDSFGINNVCLVDGQPRTLGLRELLD 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R  VV RRT++ L K R+R H++ GL IA+ ++DEV++++R S +  TAR  LMQ
Sbjct: 360 VFVRHRMTVVERRTRFRLGKRRERQHLVEGLLIAILDIDEVIQVVRSSDDAATARTRLMQ 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT     ++  E + 
Sbjct: 420 --------------------------VFDLSEAQASYILELQLRRLTKFSVIELEKERDE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           L  EI++   IL+  + L G++ +EL +V +E  TPRRT ++E
Sbjct: 454 LAREIEQLEAILADETLLRGVVSRELAAVAEEFGTPRRTVLLE 496


>gi|166368730|ref|YP_001661003.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166091103|dbj|BAG05811.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 914

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 236/527 (44%), Positives = 332/527 (62%), Gaps = 36/527 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D      I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAKQL---DFLASGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++Y+AL RM QD+S R  L+ G GNFGS+
Sbjct: 58  HELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL       +L  + +  V+F  N+D S QEPVVL A+ P +++NG 
Sbjct: 118 DNDPPAAMRYTETRLAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGEVV+G +A+IDNPD+  + L+EII GPDFPTG  IL  TGI+ 
Sbjct: 178 SGIAVGMATNIPPHNLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDTGIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKT------SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RGV+  E          +R  IVVTE+P+QVNKAA +EKIAELV   ++
Sbjct: 238 AYRTGRGIIPVRGVAKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKL 297

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IAD+RDES+R+G RVVIELKR +    +L  LY+ T+LQ+ F   ++AL   +P + +
Sbjct: 298 EGIADIRDESNREGIRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQPRQLS 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+ F+ FRE  + R+    L +A DR H++ GL +A+ N+D VV I++ +P+  TA
Sbjct: 358 LKQVLQEFLRFRETTLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +                                + +S+ Q  +IL + L RLTGL R  +
Sbjct: 418 KYRFQAE--------------------------LGISDAQADSILAMPLRRLTGLERQKL 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
             E   L  +I++   +L +R   L  +K+EL S+K +    RRT+I
Sbjct: 452 ETEATELQAKIQQLETLLHNRQEFLKSLKKELRSLKKKFADSRRTKI 498



 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 98/300 (32%), Gaps = 58/300 (19%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                Y      +P      +   + ++L+    +    ++          N  ++  ++
Sbjct: 664 DNAKAYPIATREVP--PKDNQPVLISSLLTKTAQKDSEAVLNQFFLTEPQKNQELLLLSQ 721

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SA 712
            G ++R  + +   +   G   MKL   D +       +  D+ + T  G+ +R+P+   
Sbjct: 722 QGRIKRLPIDELEGVGSRGLSLMKLKEDDRLYGAIFTHEGLDLAIATSSGRVLRYPVREE 781

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +     +++ G+  + L  G+ +     + H +                           
Sbjct: 782 LLPMMSKSAQGLAILRLRYGEHLAGCVSLPHREN-------------------------- 815

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                      +L +S  G+GKR +  + R+S     G  A   
Sbjct: 816 ---------------------------LLLISGLGYGKRLAIENLRLSQLGDLGSPALQF 848

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             +N+  +L A+    +   ++L +++   + + V  + +  +   G  +      E+++
Sbjct: 849 --VNKQDSLAAMVAAREGSIVLLSTNQNRKLPLEVETVTVTGKDGTGSQLVKLNPAEKII 906



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 85/207 (41%), Gaps = 17/207 (8%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G +KR+P+        G +G S + ++++D +           +   +S G V + 
Sbjct: 719 LSQQGRIKRLPIDELE--GVGSRGLSLMKLKEDDRLYGAIFTHEGLDLAIATSSGRVLRY 776

Query: 602 KVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            V    LP+ S  A+G A+   L L  GE +   +  P  E+      ++  +  G  +R
Sbjct: 777 PVREELLPMMSKSAQGLAI---LRLRYGEHLAGCVSLPHREN------LLLISGLGYGKR 827

Query: 660 NKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             + +          +  L   + +D + ++    + + +LL+T   + +   +      
Sbjct: 828 LAIENLRLSQLGDLGSPALQFVNKQDSLAAMVAAREGSIVLLSTNQNRKLPLEV-ETVTV 886

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLH 743
            G++  G + + L   +++I   ++ H
Sbjct: 887 TGKDGTGSQLVKLNPAEKIIKAQLLHH 913


>gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
 gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
          Length = 751

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 242/744 (32%), Positives = 375/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L  G  P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+      M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWD-------------------------LTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + + T                + 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAVLTAFVHDPARKQ------LI 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  GN      ++ I   R GK  M   L    ++L        + + +  +  + + F
Sbjct: 616 VSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLL---VPVSGDHVAVVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P++ +         GVR      G
Sbjct: 673 PLAQVPEMT--RGKGVRLQRYKDG 694


>gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
 gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
          Length = 777

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 230/755 (30%), Positives = 371/755 (49%), Gaps = 68/755 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M          E            +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 12  MASTTDDLPPSESGTSIDTPFDSALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 71

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             M ++ ++ Y K AR+ G+V+GK+HPHG+ A+YDA+ R+AQD+SLR  L++GQGNFG++
Sbjct: 72  RAMRLDPSQGYKKSARVVGDVIGKFHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNI 131

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  L+  L + TVDFRP Y+G  +EP ++   +PN+L NG  
Sbjct: 132 DGDNAAAYRYTEARLTRVAVDLMQGLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGAS 191

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN  EV+D  + +IDNP   L  L++ ++GPDFPTG ++      I  
Sbjct: 192 GIAVGMATNIPPHNAAEVIDAALLLIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQ 251

Query: 240 AYATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           AY +GRGS  +R                 IEK SG   Q+V++EIPY V K  ++E++A+
Sbjct: 252 AYESGRGSFRVRARFSIGKDADGKWEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQ 311

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L+ ++++  + D+RDES      V++   R   A+V+ + LYR T L+S F++N+  L+ 
Sbjct: 312 LIADRKLPILEDVRDESAEDLRIVLVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDA 371

Query: 347 YK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            + P+   L  +L  ++  +  V+VRR ++ + K  DR  ++ G  IA  NLD ++ IIR
Sbjct: 372 TRTPKVMGLKQLLTEWLQHQIIVLVRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIR 431

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               P+                                     L++ Q  AIL +RL  L
Sbjct: 432 TEDEPKPV-----------------------------MIAEFELTDRQAEAILNMRLRSL 462

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRI 520
             L   +++ E   L  E +E   ++ S +R    ++++L  ++           RRT I
Sbjct: 463 RKLEEMELKREQTDLTAEREELAKLVESPARQRTRLRKDLERLRGVYGLDTSLGARRTTI 522

Query: 521 VEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            E     ++  +  I +E + V +S  G+++     V   Q    K       ++ D + 
Sbjct: 523 AEAAPTREIPLDAMIEKEPVTVILSKRGWIRAQRGHVAPDQWGEFK------FKEGDELL 576

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   +L  +S G  +     +LP G  +  G+ L  ++ ++   RI  ++P   
Sbjct: 577 FAAHAQTTDKLLIAASDGRFFTVGADKLPGG--RGFGEPLRLMVDIDPDARIVAMVP--- 631

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDIL 697
              +     ++ A+  G+       D     R G+  + L  R  ++        ++ + 
Sbjct: 632 ---ASAGGRLLLASTSGHGFIVNTDDVTAETRKGRNVVNLKPRAALVVARPIAPGDDSVA 688

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +     + V FP++ + V       GV       G
Sbjct: 689 VVGDNRKLVVFPLAEVPVMG--RGQGVMLQRYRDG 721



 Score = 46.1 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 75/254 (29%), Gaps = 64/254 (25%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
            P D         V  +K G +R  +    +  ++ G+   K    DE+L        + 
Sbjct: 531 IPLDAMIEKEPVTVILSKRGWIRAQRG--HVAPDQWGE--FKFKEGDELLFAAHAQTTDK 586

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L+    G+        +         G RG             + L  D D D RI  M
Sbjct: 587 LLIAASDGRFFTVGADKLP--------GGRGF---------GEPLRLMVDIDPDARIVAM 629

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              SA  R                                    +L  S  G G   ++ 
Sbjct: 630 VPASAGGR------------------------------------LLLASTSGHGFIVNTD 653

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIAS 874
           D     R G+ +            ALV   P+   D  + +V D   L+  P+ E+ +  
Sbjct: 654 DVTAETRKGRNVVNLK-----PRAALVVARPIAPGDDSVAVVGDNRKLVVFPLAEVPVMG 708

Query: 875 RATKGVVIFSTAKD 888
           R  +GV++      
Sbjct: 709 RG-QGVMLQRYRDG 721


>gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
 gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
          Length = 744

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 233/725 (32%), Positives = 368/725 (50%), Gaps = 55/725 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    +   +   YL YA++ I+ R++PD+RDGLKPVHRR++F M Q+ ++    + KC
Sbjct: 8   NVQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAMRQLRLDPGSGFKKC 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMGK+HPHG+ +IY+AL R+AQD++ R  LIEGQGNFG++DGD  AA RYTE R
Sbjct: 68  ARVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNIDGDNAAAMRYTESR 127

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL+ + +D VDFRP YD    EPVVL   +PN+L NG  GIAVGMAT+IP HN
Sbjct: 128 LTEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAAGIAVGMATSIPPHN 187

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGV 253
             E+    + +I +P+ D  AL++ ++GPDFPTG  ++  R  + +AY TGRGS+ +R  
Sbjct: 188 AAELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLSAYETGRGSLRVRAR 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                  G   QIVVTEIPYQV K+ ++E++A+L+ E+++  + D+RDES  +   V+  
Sbjct: 248 WSRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDIRDESTERVRIVLEP 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
             R    D+++  L+R T+ +  FS+NM  L+    P    L  +L+A++  R EV+ RR
Sbjct: 308 KSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLREMLRAWLDHRHEVLERR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L     R  +L G      NLDEV+RIIR    P+ A                   
Sbjct: 368 SRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPA------------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q  AIL +RL  L  L   +IR E  +L  E K    +L+
Sbjct: 409 ----------LIAAFTLTDTQAEAILNMRLRSLRKLEEMEIRKEHKALTAERKALDAMLA 458

Query: 493 SRSRLLGIIKQELLSVKDELD---TPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
             ++    I+ E+ +           RRT I   +   ++  E  + RE + V +S  G+
Sbjct: 459 DPAKRWARIETEIEATAKTFGGGPGARRTTISGAVPVTEVAVEALVEREPLTVILSEKGW 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +        RA +      + +  ++ D +  L   S+   V  F++ G VY  +   LP
Sbjct: 519 I--------RALKGHAVAEAELKFKEGDRLKALLRCSSLDRVTVFATNGRVYSLRAADLP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  +  G+A+  ++ L   + +  +       +     Y+V  T  G       ++   
Sbjct: 571 RG--RGDGQAIRLMVDLGNEDEVAALFI-----ADPEARYLVAGTD-GRGFIIAGAELGA 622

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R+GK  + +    E +        + + +  +  + + FP+  +   A     GV   
Sbjct: 623 EKRTGKQILTVRPGQEAMLCRKVAG-DHLAVIGQNRKLLVFPLEQVPEMA--RGAGVILQ 679

Query: 728 SLAKG 732
               G
Sbjct: 680 KYKDG 684


>gi|83953741|ref|ZP_00962462.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841686|gb|EAP80855.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 247/522 (47%), Positives = 331/522 (63%), Gaps = 11/522 (2%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           +AV N+DEVV  IR S +   AR +LM R W A  I   I LIDD ++T   DGT  LSE
Sbjct: 1   MAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSE 60

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R++GII  EL  VKD+
Sbjct: 61  AQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQ 120

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
              PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  
Sbjct: 121 FAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQT 180

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           ++ED VT LF+ +THT +LFF++ G VYK K WRLP G   ++GKA++NIL +  G  I 
Sbjct: 181 KEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIA 240

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVE 688
            IMP   DE  W++L VVFAT  G VRRNKLSDF  + R+GKIAMK +       +++  
Sbjct: 241 AIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINAR 300

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             + ++D++L T  G+ +RFP + +RVF  R SVGVRGI L   D+V+SM+I+ H DA  
Sbjct: 301 IASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDDKVVSMSIIRHFDASS 360

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           +ER  Y+K     RR ++G  ++    ++++  + N S+ER  E+   E  +LT++EKG 
Sbjct: 361 EERTAYLK----MRRAMAGLADDAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGA 416

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L + KG  IRVPV 
Sbjct: 417 GKLSSSHDYPVRGRGGLGVTAMD--KAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVE 474

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            I   SR+  GV +F T + E VVSV  I +    DE    E
Sbjct: 475 GISFRSRSAGGVKVFDTGRGEVVVSVAWIADQG--DETGDDE 514


>gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
 gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
          Length = 902

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 246/798 (30%), Positives = 379/798 (47%), Gaps = 78/798 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     +    EE G  ++++      +YL YA++V+  RA+P++ DG KPV RRIL  M
Sbjct: 92  MAVGAATVGPAEEDG--ALTLARYASQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDM 149

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+++  + VK ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L+  +GNFGS 
Sbjct: 150 YRMGLKFEGRSVKSARIVGDVLGKYHPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSR 209

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL+++   +VDF+PNYDG+FQEPV L A+ P VL+NG  
Sbjct: 210 DGDSAAAMRYTETRLTPISQLLLEEVDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSS 269

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT IP HNLGEV   CV +++NPD DL+ ++E++  PDFP G  I+  +  I+ 
Sbjct: 270 GIAVGMATEIPPHNLGEVAAACVRLLENPDADLNEILELMPAPDFPCGGQIITPKDEIRA 329

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            Y +GRG + +R   H E  +  + Q+V+ E+P   +  ++L++I ++   +   D    
Sbjct: 330 IYRSGRGKLRVRARWHFEDLARGQWQLVIDELPPAASARSILDRIEQISNPRPKKDKKTL 389

Query: 298 ---------------DLRDESDRQGYRVVIELKRGA---SADVILNQLYRYTSLQSLFSV 339
                          D   +   +   V +  +        D  +N L   T L+S   V
Sbjct: 390 SAKQQQAKSAMLSLLDNVRDESGKSVDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPV 449

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V L    KP +  L+ IL+ ++AFR  VV RR++  L K  DR HVL G ++ + N+D
Sbjct: 450 NLVMLGLDGKPRQKGLLEILQDWIAFRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNID 509

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            V+ IIR + +P+                                     L++ Q   IL
Sbjct: 510 RVIAIIRNADDPKA-----------------------------DLIKEFGLTDRQADDIL 540

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E      IL S   L     +E+ +       PRRT
Sbjct: 541 EIRLKQLARLAAIAIEKELAQLAKERAGLEKILGSDGALKRQTAKEIEAAAKSFADPRRT 600

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            + E      +      E + V +S  G++        RA+   G   S +  +  D + 
Sbjct: 601 VVEEAEQAAHE-VQTADEPVTVVISRKGFL--------RARTGHGHDCSLMSFKTGDGLE 651

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 + + + F    G VY   V  LP G  +  G  L   + L +G +    +    
Sbjct: 652 ATIECRSSSQISFLDQAGRVYTLAVSALPGG--RGDGSPLSAFVDLPKGAQPAGWI---- 705

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-----ETCTQE 693
             S+  N   V  T  G     K SD     ++G+  + L   + +L       +    E
Sbjct: 706 --SADPNAAAVIVTSGGKGMVLKASDVSTRLKAGRDFVTLGEGESLLPPIELPLKAAQGE 763

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA--DYDER 751
             I   +   + + FP+  +RV A     G+  ++L  G+ ++S+A+V    A      R
Sbjct: 764 QLIACLSSSNRLLVFPLKEVRVTAS-GGKGMSFMTLETGESLVSVALVDERGAIVTGTGR 822

Query: 752 ICYMKHMSAQRRLISGDT 769
               +     +R++ G T
Sbjct: 823 GGKAREAQISKRILGGAT 840


>gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae]
          Length = 768

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/756 (30%), Positives = 356/756 (47%), Gaps = 81/756 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRD 301
           +  + +++VTE+P   N A +L +I E    K                      I  +RD
Sbjct: 257 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 316

Query: 302 ESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E       L   +    +I +E+ +   +    RRT +VE             E +
Sbjct: 468 ELREEQGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRT-LVEEAGRAVLTQTAADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF---IVSTHTSVLFFSSL 595
            + +S  G++        R++       S    ++ D +          T     F    
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGPHCFTRRHPRFI--R 576

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y      +P G  +  G  + +++ L  G +   ++      +     + + ++  G
Sbjct: 577 GRTYSIDAAEIPGG--RGDGVPVSSLIELQNGAKPVAML------TGLPEQHYLLSSSGG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT------QENDILLTTKLGQCVRFP 709
                KL D +   ++GK+ M  DS + +L             +  I+  T   + + FP
Sbjct: 629 YGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFP 688

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           I  +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 IGELKIMA--KGKGLQIIGLNAGESMTHTAVSSEPE 722


>gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512]
          Length = 751

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 241/744 (32%), Positives = 375/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L  G  P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P+      M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEPKPV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWD-------------------------LTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E+   +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + + T                + 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAVLTAFVHDPARKQ------LI 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  GN      ++ I   R GK  M   L    ++L        + + +  +  + + F
Sbjct: 616 VSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLL---VPVSGDHVAVVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P++ +         GVR      G
Sbjct: 673 PLAQVPEMT--RGKGVRLQRYKDG 694


>gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 465

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 248/460 (53%), Positives = 330/460 (71%), Gaps = 9/460 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RR
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++
Sbjct: 366 TIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLAR 464
              D +             DG  YL+E Q +AIL+LRL +
Sbjct: 426 RAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQK 465


>gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
 gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 229/754 (30%), Positives = 364/754 (48%), Gaps = 74/754 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 32  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVV 91

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 92  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 151

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++   TVDF PNYDG+F+EP +L AR P VL+NG  GIAVG+AT IP HNL EV
Sbjct: 152 AELLLSEIDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 211

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
              CVA++D+P++D  ALM+ + GPDFP G  I+     I +AY TG+GS+ +R    +E
Sbjct: 212 AAACVALLDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVE 271

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           K +  + + +VTE+P   +   +L +I E    K                         +
Sbjct: 272 KLARGQWRAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRV 331

Query: 300 RDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD +    ++   +      D  +N L   TSL+   S+N+V +    +P +  L  
Sbjct: 332 RDESDSESPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDGRPGQKGLKP 391

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++ FR   V RR  + L +   R H+L G  IA  ++DEV+R+IR S  P+     
Sbjct: 392 ILTEWIDFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKP---- 447

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E+Q   ILE+RL +L  L    +  E
Sbjct: 448 -------------------------DLIKAFGLTEIQAEDILEIRLRQLARLEGFKLEKE 482

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L+ L  E +    +L +   L  +I+ E+ +   +    RRT I      +        E
Sbjct: 483 LSELREEREGLRHVLDTPDALTRLIRDEIQADAAKYGDKRRTEIKAAERAV-LTQTTADE 541

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+         +  +D D +  +    T  + +     G
Sbjct: 542 PVTLILSQKGWI--------RARVGHNVELETLSFKDGDGLAAVVETRTVWNAIVLDHNG 593

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G  +  G  + +++ L  G +   ++   +++        V A   G 
Sbjct: 594 RAYTIDPATVPTG--RGDGVPVASLVDLQDGAKPAQLISGRDEDR------FVVAGSGGY 645

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISA 712
               K+ D     ++GK  + LD+ + +L          ++  ++  +   + + FP + 
Sbjct: 646 GFIAKIGDMAGRVKAGKAFITLDASETVLEPVKLPAAPLEQLQLVAASDSDRLLAFPAAE 705

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           ++  A     G+  ++L  G  + ++ +V    A
Sbjct: 706 LKELA--KGRGLMLMALDDGAALTAIGLVAGGKA 737


>gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
 gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
          Length = 765

 Score =  464 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 233/758 (30%), Positives = 374/758 (49%), Gaps = 78/758 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T  +  S  +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M 
Sbjct: 3   TTDLDDSGADPFDAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMR 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           Q+ ++    + K AR+ GEV+GKYHPHG+ A YDA+ R+AQD++LR  L+EGQGNFG++D
Sbjct: 63  QLKLDPASGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNID 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  L++ L   TVDF P Y+   +EP ++   +PN+L NG  G
Sbjct: 123 GDNAAAYRYTEARLTKTAMRLMEGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMATNIP+HN+ E+VD  + VIDNP ++   LMEI +GPDF TG V+   T  I +A
Sbjct: 183 IAVGMATNIPSHNVAEIVDATLEVIDNPHVEHARLMEIFKGPDFATGGVVPESTETISHA 242

Query: 241 YATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
           Y TGRGS  +RG  H             IE+  G + Q+V++EIPYQV K  ++E+IA  
Sbjct: 243 YETGRGSFRVRGRFHAAEAEKEEDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAAA 302

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           + ++++  + D+RDESD Q   V++   R    +++   +Y+ T +++ F +N+  L+  
Sbjct: 303 IADRKLPILEDVRDESDEQIRIVLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLDRT 362

Query: 348 K-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           + P    L  +L+ ++A + +++ RR+++ L++   R  ++ G  IA  NLD V+ IIR 
Sbjct: 363 RTPMVMGLKELLENWIASQIDILQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEIIRT 422

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
              P+                                     L++ Q  AIL +RL  L 
Sbjct: 423 EDEPKPV-----------------------------MMDEFKLTDRQAEAILNMRLRSLR 453

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV 521
            L    +R E + L  E  E   +L S +R    +K++L +++ E         RRT I 
Sbjct: 454 KLEEMQLRGEKDELLKEQDELEKLLGSPARQRTRLKRDLGALRKEYSEDTALGARRTTIE 513

Query: 522 EGLLDME--DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR----SGVVMRDED 575
           E    +E   +  I +E + V +S  G++            RG KG          ++ D
Sbjct: 514 EAAPAVEFSMDAMIEKEPVTVILSQKGWI------------RGAKGHLPLDQEFKYKEGD 561

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
               +    T   +L   + G V+     +LP    +  G+ + N L ++   +  +++ 
Sbjct: 562 APAFVLHAQTTDKLLLIGNDGRVFTLGADKLPGA--RGFGEPVRNTLDIDGQAQFVSVVV 619

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-EN 694
             E +       V+ A  +G          +   R G+  M +    +++      +  +
Sbjct: 620 HSEGQE------VLLAASNGKGFAVGTDAMLAETRKGRQVMNVKGNVKLVVARPIAKAHD 673

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + +     + V F +  +   A     G +  +   G
Sbjct: 674 HVAVVGDNRKLVVFNLEELPRLA--KGQGNKLQNYRDG 709


>gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583]
 gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583]
          Length = 745

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 231/735 (31%), Positives = 377/735 (51%), Gaps = 58/735 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD+ +E+ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +  
Sbjct: 2   SDKIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  LI+GQGNFG++DGD  AA
Sbjct: 62  AQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  GIAVGMA
Sbjct: 122 MRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
           T+IP HN+ E+ D  + +I + D   + L + + GPDFPTG +++  +  I+ AY TGRG
Sbjct: 182 TSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R   H E  + +   IV+TEIPYQ+ K+ ++EK AEL+  +R+  + D++DES   
Sbjct: 242 SFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDESAED 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V+    R    ++++  L++ T  +  F +N+  L  G  P   +L   L+ ++  R
Sbjct: 302 VRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWLEHR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EV++RR+ + L +   R  +L G  IA  NLD+V++IIR    P   ++EL+       
Sbjct: 362 QEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEP---KKELLTH----- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E Q  AIL +RL  L  L   +IR E  +L  E +
Sbjct: 414 ---------------------FQLTENQAEAILNMRLRSLRKLEEFEIRKEFENLKAEEE 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL---DMEDEDCIVRED 537
           +   +L S  +   +I +E+  V+ +         RRT   +      D   +  I +E 
Sbjct: 453 KLQALLGSNVKQWQMISEEIKKVRKKFAPETSLGKRRTTFEDSPKRDVDDIYQAMIEKEP 512

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + + +S  G++        RA +        +  ++ D +   F   T   ++  S+ G 
Sbjct: 513 VTIVISEKGWM--------RALKGHLNDYKALSFKEGDCLKLAFPAFTTDKIVVVSTGGK 564

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            +      LP G  +  G+ +  ++ ++    I T               ++  + +GN 
Sbjct: 565 FFTIGANTLPGG--RGHGEPIRILVDMDNEHDILTAFVHNA------QGKLLLVSSYGNG 616

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                ++ I   R GK  M + S D++  +    + + I +  +  + + FPI  I   +
Sbjct: 617 FIISETEVIANTRKGKQIMNVKSPDKV-KLCIPVKGDHIAVIGENRKMLIFPIEQIPEIS 675

Query: 718 GRNSVGVRGISLAKG 732
                GVR      G
Sbjct: 676 --RGKGVRLQRYKDG 688



 Score = 41.8 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +  +L VS  G G   S  +   + R GK I   +V   ++   +    PV   D 
Sbjct: 600 VHNAQGKLLLVSSYGNGFIISETEVIANTRKGKQI--MNVKSPDK---VKLCIPVK-GDH 653

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           I ++ +   ++  P+ +I   SR  KGV +        V
Sbjct: 654 IAVIGENRKMLIFPIEQIPEISRG-KGVRLQRYKDGVVV 691


>gi|294630344|ref|ZP_06708904.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292833677|gb|EFF92026.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 685

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 233/667 (34%), Positives = 357/667 (53%), Gaps = 57/667 (8%)

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV  G    ++NP+   + L+    E I+GPDFPTGA+++GR GI+ AY TGRGSI 
Sbjct: 19  NLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIT 78

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE S R G 
Sbjct: 79  MRAVVEVEEIQN-RQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 137

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 138 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEV 197

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM          
Sbjct: 198 IVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVDVARGGLM---------- 247

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + E+Q  AILE++L RL  L R  I  E + L  +I E  
Sbjct: 248 ----------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKINEYN 291

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S  R  GI+  EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+
Sbjct: 292 EILASPVRQRGIVSAELAAIVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYI 351

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP 
Sbjct: 352 KRTKTDDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPD 411

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++  L D+   
Sbjct: 412 AGRDARGQHVANLLAFQPDESIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSP 468

Query: 669 NRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSV 722
              G IA+ L        DE++  E  + ++D+LL +K  Q +RF  S   +   GR + 
Sbjct: 469 RSGGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSIRFTASDDTLRPMGRATS 528

Query: 723 GVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           GV+G+S  +GD+++SM +V          D  Y +R    ++    R  +     +I   
Sbjct: 529 GVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTRVDEYRVQGRGGLGIKAAKIVED 588

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + +      + E            IL ++  G   RT   + R + R   G++  ++ K 
Sbjct: 589 RGELVGALVVEE---------TDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKR 639

Query: 836 NEIGALV 842
           + +  + 
Sbjct: 640 DAVVGIA 646



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 14/263 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVT 578
           E +  +           +V  +  G VK+ PL  Y + R GG     +  R++   D + 
Sbjct: 431 ESIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELI 490

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++     
Sbjct: 491 GAELVSADDDLLLISKKAQSIRFTASDDTL-RPMGRATSGVKGMSFREGDELLSMNVVR- 548

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
                   +V  AT  G  +R ++ ++    R G   K A  ++ R E++      + ++
Sbjct: 549 -----PGTFVFTATDGGYAKRTRVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDE 603

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E    +
Sbjct: 604 ILAITLSGGVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDV 662

Query: 756 KHMSAQRRLISGDTEEITSLKND 778
                   + +  T+E  +   +
Sbjct: 663 AVDETAEGVATDGTDEGEAPSAE 685


>gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 749

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 381/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S   +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRS--FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NL+EV++IIR    P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  +IL +RL  L  L    +R E +
Sbjct: 416 LR--------------------------FKLTENQAESILNMRLRSLRKLEEFQLRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLDMED---E 530
           SL IE ++  ++L+S  +   +I +E+  V+           RRT   +     E+   +
Sbjct: 450 SLKIEKEKLQNLLNSNIKQWKVIAEEITRVRKIFGPETFLGKRRTTFEDAPRHDENDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G+V        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWV--------RALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ +N    I T                + 
Sbjct: 562 VISTGGKFFTISANTLPGG--RGHGEPIRILVDMNNEHDILTAFVHNVQGKR------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      +D I   R GK  M + S D +  +    + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSL-KLCIPVEGDYIAIVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I   +     GVR      G
Sbjct: 673 EQIPEMS--RGKGVRLQRYKDG 692



 Score = 41.4 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 26/216 (12%)

Query: 679 DSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVR-GISLAKGDQV 735
           D  D  +      +E   ++ ++ G  + ++  ++  +  + +   G++        D++
Sbjct: 503 DEND--IHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKI 560

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I ++              +    +       G  E I  L + ++    ++         
Sbjct: 561 IVIS----------TGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGK 610

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +    L +S  G G   S  D   + R GK +          + +L    PV + D I +
Sbjct: 611 R----LLISSYGNGFIVSETDIIANTRKGKQVMNVK-----SLDSLKLCIPV-EGDYIAI 660

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +   ++   + +I   SR  KGV +        V
Sbjct: 661 VGENRKMLIFSIEQIPEMSRG-KGVRLQRYKDGGIV 695


>gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C]
          Length = 749

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 380/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S   +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRS--FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NL+EV++IIR    P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  +IL +RL  L  L    +R E +
Sbjct: 416 LR--------------------------FKLTENQAESILNMRLRSLRKLEEFQLRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLDMED---E 530
           SL IE ++   +L+S  +   +I +E+  V+           RRT   +     E+   +
Sbjct: 450 SLKIEKEKLQSLLNSNIKQWKVIAEEITRVRKIFGPETFLGKRRTTFEDAPRHDENDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G+V        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWV--------RALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ +N    I T                + 
Sbjct: 562 VISTGGKFFTISANTLPGG--RGHGEPIRILVDMNNEHDILTAFVHNVQGKR------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      +D I   R GK  M + S D +  +    + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSL-KLCIPVEGDYIAIVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I   +     GVR      G
Sbjct: 673 EQIPEMS--RGKGVRLQRYKDG 692



 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 26/216 (12%)

Query: 679 DSRDEILSVETCTQENDILLTTKLG--QCVRFPISAIRVFAGRNSVGVR-GISLAKGDQV 735
           D  D  +      +E   ++ ++ G  + ++  ++  +  + +   G++        D++
Sbjct: 503 DEND--IHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKI 560

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I ++              +    +       G  E I  L + ++    ++         
Sbjct: 561 IVIS----------TGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGK 610

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +    L +S  G G   S  D   + R GK +          + +L    PV + D I +
Sbjct: 611 R----LLISSYGNGFIVSETDIIANTRKGKQVMNVK-----SLDSLKLCIPV-EGDYIAI 660

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +   ++   + +I   SR  KGV +        V
Sbjct: 661 VGENRKMLIFSIEQIPEMSRG-KGVRLQRYKDGGIV 695


>gi|145629330|ref|ZP_01785129.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978833|gb|EDJ88556.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 589

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 254/613 (41%), Positives = 368/613 (60%), Gaps = 34/613 (5%)

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A IDN +I +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R  + +E     
Sbjct: 1   MAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEAYRTGRGKVYVRARATVETNEKG 60

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ D S+++G R+ I++KR A  +V
Sbjct: 61  REQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEV 120

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +LN LY  T +Q  F +NMVAL+  +P  F L  I+++FV  R EVV RR+ + L KAR+
Sbjct: 121 VLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKARE 180

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW----NASDIKDLIDLIDDSS 438
           R H+L GLA+A +N+DE++ IIR S N E A   +  RSW    +  ++ D+    D+  
Sbjct: 181 RTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDIINLLDVSARPDELE 240

Query: 439 YTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             +G  G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  RL
Sbjct: 241 ENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERL 300

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y 
Sbjct: 301 MEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYE 360

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ 
Sbjct: 361 AQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRP 420

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL L + ERIT I+P    E    + +VV AT  G V++  L++F +   +G IA+ 
Sbjct: 421 IVNILPLQENERITAILPVSAYEE---DKFVVMATAGGIVKKIALTEFSRPRSNGIIALN 477

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V+     N+I+L +  G+ VRF  +A+R    R + GVRGI LA       
Sbjct: 478 LRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMG-RLATGVRGIKLA------- 529

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
               L  D   DE                 + EEI+    ++S++ NI +     +   E
Sbjct: 530 ----LTNDISDDESAV--------------EIEEISDDNAEASLDLNIDKVVSLVVPKGE 571

Query: 798 QFILTVSEKGFGK 810
             ILT ++K   K
Sbjct: 572 GAILTATQKRLRK 584



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              QE+ ++  +  G     P++       R   G     + + D +  + +    D   
Sbjct: 335 LIAQEDVVVTLSHEGYVKYQPLTDYEA-QRRGGKGKSATKMKEEDFIEKLLVANTHDTIL 393

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R+ ++K     +         I ++      E  I+         +++F++  +
Sbjct: 394 CFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENE-RITAILPVSAYEEDKFVVMAT 452

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  K+ +  +F     +G  I A ++   +E   L+ V   + +++I+L S +G ++R
Sbjct: 453 AGGIVKKIALTEFSRPRSNG--IIALNLRDEDE---LIGVDITDGSNEIMLFSSQGRVVR 507

Query: 865 VPVNEIRIASRATKGVVIFSTA------KDERVVSVERIRESEIVDEAEST 909
              N +R   R   GV     A       DE  V +E I      D AE++
Sbjct: 508 FAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEIS----DDNAEAS 554



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 9/147 (6%)

Query: 763 RLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            +I  + EE+ +   D     +     +   ++L  +E  ++T+S +G+ K     D+  
Sbjct: 302 EVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEA 361

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG  AT + + + I  L+     N +D I+  S +G L  + V ++  ASR  +G
Sbjct: 362 QRRGGKGKSATKMKEEDFIEKLLVA---NTHDTILCFSSRGRLYWLKVYQLPQASRGARG 418

Query: 880 ---VVIFSTAKDERVVSVERIRESEIV 903
              V I    ++ER+ ++  +   E  
Sbjct: 419 RPIVNILPLQENERITAILPVSAYEED 445


>gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42]
 gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42]
          Length = 751

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 241/744 (32%), Positives = 376/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QI++TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L  G  P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+      M
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPV----M 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W+                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 417 MARWD-------------------------LTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---E 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  E     E+   +
Sbjct: 452 ELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAEAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHISETATLTFKEGDGLKVAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + + T                + 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAVLTAFVHDPTRKQ------LI 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +  GN      ++ +   R GK  M   L    ++L        + + +  +  + + F
Sbjct: 616 VSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLL---VPVSGDHVAVVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P++ +   +     GVR      G
Sbjct: 673 PLAQVPEMS--RGKGVRLQRYKDG 694


>gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301]
 gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301]
          Length = 761

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 233/753 (30%), Positives = 370/753 (49%), Gaps = 71/753 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   ++ ++ EE     +V I +  + +YL YA++V+ GRA+P + DG KPV RRILF M
Sbjct: 1   MDTSMLENNNEEN----AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G V+G YHPHG+++ Y+A  R+AQD++LR  LI+GQGNFGS 
Sbjct: 57  KEMGLIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF+ NYDG+FQEPV+L AR P +L+NG  
Sbjct: 117 DGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT +  HN+ E+ +  + V+DNPD      M+ + GPDFP G   I     I +
Sbjct: 177 GIAVGMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADILS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR------- 292
            Y TGRGS+ +R    +E  +  + +I++ E+P+ V+   + ++I  +   K        
Sbjct: 237 TYETGRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKTI 296

Query: 293 -----------IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
                      +  I  ++ E  +    ++       S+D ++  L  +TS++    VNM
Sbjct: 297 DQDQLLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNM 356

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  +I ILK ++AFR  VV RR ++ L+K   R H+L G  IA  ++DEV
Sbjct: 357 VMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEV 416

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +R+IR S  P+T                                    LSE+Q   ILE+
Sbjct: 417 IRVIRNSDEPKT-----------------------------DLIAAFQLSEIQAEDILEI 447

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E     +IL S ++L  +  +E+    ++    RRT I
Sbjct: 448 RLRQLARLEGFKIEKELKDLREEADGLQNILGSDNKLRKLTAKEIKQDAEKYGDNRRTLI 507

Query: 521 VE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                +    +  +V E + + +S  G++        RA++  G  R  +V +  D    
Sbjct: 508 EPVERVQGGQKAFVVDEPVTILISKNGWI--------RARQGHGVERESIVWKSGDGEFA 559

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   ++   + G  Y      +P G  +  G  L +I+ +  G ++   +   +D
Sbjct: 560 VIETRTVLPIVLLDTNGRCYAFDASTVPGG--KGDGIPLSSIIEVQNGAKLAHALSGKDD 617

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           +        +FAT +       L   +   ++GK  MK +    IL      +   + +T
Sbjct: 618 DR------YLFATSNSYGFVAPLKGLVARPKAGKAFMKPEDGALILPPIKLDERTHVAVT 671

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +   + + FPIS +  +      GVR + +   
Sbjct: 672 SSENKFLVFPISEVNEYP-NGGKGVRMMDIPDK 703


>gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1]
          Length = 749

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 235/735 (31%), Positives = 376/735 (51%), Gaps = 58/735 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S   +++ I  V +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +  
Sbjct: 6   SQPFDKECIEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 65

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD  AA
Sbjct: 66  GQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAA 125

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + A  LL+ + +D++DFR  Y+   +EPVVL   +PN+L NG  GIAVGMA
Sbjct: 126 MRYTEARMTEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMA 185

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRG 246
           T+IP HN+ E+ D  + +I +P+ + + L + + GPDFPTG +++  +  I+ +Y TGRG
Sbjct: 186 TSIPPHNVAELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYRTGRG 245

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R   H E++S     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+ DES   
Sbjct: 246 LFRLRSRWHQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAED 305

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
              V++   R   A++++  L++ T  +  F +N+  L  G  P   +L   L+ ++  R
Sbjct: 306 IRIVLVPKNRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLEHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EV+VRR+ Y LN+   R  +L G  IA  NLD+V++I+R    P   ++EL++      
Sbjct: 366 KEVLVRRSSYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEP---KKELIEH----- 417

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++ Q  AIL +RL  L  L   +IR E  SL  E  
Sbjct: 418 ---------------------FKLTDNQAEAILNMRLRSLRKLEEFEIRKEFESLKTEEA 456

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL-DMEDED--CIVRED 537
           +   +L+S  +   +I  E+  V+           RRT   +    D+ D     I RE 
Sbjct: 457 QLQALLASNIKQWKMISDEITKVRKIFGPETILGKRRTTFEDAPKHDVNDIQQAMIEREP 516

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + + +S  G++        RA +        +  ++ D +       T   ++  S+ G 
Sbjct: 517 VTIIISEKGWM--------RALKGHLNDYKMLSFKEGDCLKLALPAFTTDKIVVVSTGGK 568

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            +      LP G  +  G+ +  ++ ++    I T       E        +  + +GN 
Sbjct: 569 FFTIGANVLPGG--RGHGEPIRILVDMDGEHDILTAFVHNAQEKR------LLVSAYGNG 620

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                ++ I   R GK  M + S D++         + + +  +  + + F I  I   +
Sbjct: 621 FIVSENEVIANTRKGKQIMHVKSPDKVKLCVPVNG-DYVAVVGENRKLLIFAIEQIPEMS 679

Query: 718 GRNSVGVRGISLAKG 732
                GVR      G
Sbjct: 680 --RGKGVRLQRYKDG 692


>gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
 gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
          Length = 750

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 376/742 (50%), Gaps = 59/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKNLVPP-SGGDDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 120 DGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+E I GPD PTG VI+  R  I  
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 240 AYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           RDES      V++   R   A +++  L+R + L+S   +NM  L+ G  P+   L  +L
Sbjct: 300 RDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEVL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A R++V+VRR+++ L     R  +L GL +A  NLDEV+RIIR    P+       
Sbjct: 360 SEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEPKQV----- 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 415 ------------------------MMAKWSLTDNQAEAILNMRLRNLRKLEEFEIRKEFD 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV---EGLLDMEDE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+     +  ++   +
Sbjct: 451 ELSSEKAEIEGLLASDEKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAIQQ 510

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +      S +  ++ D     F   T   +L
Sbjct: 511 AMIEKEPVTIVISQKGWI--------RALKGHMSDTSALTFKEGDGPKLAFPAQTTDKLL 562

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y     +LP G  +  G+ +  ++ +   + I T            +  ++ 
Sbjct: 563 LLTTGGKAYTLGADKLPGG--RGHGEPIRIMVDMENDQDILTAFV------HDPSRKLLL 614

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  GN      S+ +   R GK  M +   DE       T  + + +  +  + + FP+
Sbjct: 615 VSTGGNGFIVAESEMVANTRKGKQIMNVAMPDEAKLAVPVTG-DHVAVVGENRKLLAFPL 673

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +   +     GVR      G
Sbjct: 674 SQVPEMS--RGKGVRLQRYKDG 693


>gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3]
          Length = 749

 Score =  462 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 243/735 (33%), Positives = 382/735 (51%), Gaps = 60/735 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S   +++ I S+ +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRS--FDKEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLKLNPGQPYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D + L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NLDEV++IIR S  P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  +IL +RL  L  L    IR E  
Sbjct: 416 LR--------------------------FKLTENQAESILNMRLRSLRKLEEFQIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGL-LDMEDED- 531
           SL IE ++  ++L+S  +   II +E+  V+           RRT   E    D+ D   
Sbjct: 450 SLKIEKEKLQNLLASNIKQWKIIAEEITRVRKIFGPETFLGKRRTTFEEAPRHDVNDIHQ 509

Query: 532 -CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLNDYKTLSFKEGDCLKLAFSAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ ++    I T                + 
Sbjct: 562 VISTGGKFFTISANILPGG--RGHGEPIRILVDMDNEHNILTAFVHNTQRKR------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      SD I   R GK  M + S D +  +    + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSL-KLCIPVEGDYIAIVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVR 725
             I   +     GVR
Sbjct: 673 EQIPEMS--RGKGVR 685



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S  G G   S  D   + R GK +         ++   V      + D I +V +  
Sbjct: 612 LLISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSLKLCIPV------EGDYIAIVGENR 665

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            ++   + +I   SR  KGV +    KD  VV V+    SE +   ++ E
Sbjct: 666 KMLIFSIEQIPEMSRG-KGVRLQR-YKDSVVVDVKTFTLSEGLSWQDTAE 713


>gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 753

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/741 (33%), Positives = 378/741 (51%), Gaps = 58/741 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++   +SD+  E+   SVS+   ++  YL YA++ I  RAIPD RDG KPVHRRI+  M 
Sbjct: 3   SDKTPNSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHAMS 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+++N  + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++D
Sbjct: 63  EMGLDFNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGNID 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE R+ + A  +L  + ++ VDFR  Y+    EPVV   ++PN+L NG  G
Sbjct: 123 GDSAAAYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGSSG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNA 240
           IAVGMAT+IP+HN+ E+ +  + +I++P+  L+ L+E I GPDFPTG +I+  R  I  +
Sbjct: 183 IAVGMATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIFES 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRG   +R    +E        IVV+EIPYQV K+ ++EKIA+L+  KRI  + D+R
Sbjct: 243 YRSGRGGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLEDIR 302

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILK 359
           DES      V+    R    D+++  ++  + L++ F +NM  L+  + P+  +L G+LK
Sbjct: 303 DESAEDIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGVLK 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV++RR+ + +     R  VL GL+IA  N+DE++ IIR    P++       
Sbjct: 363 EWLVHRREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSV------ 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L+E Q  AIL LRL  L  L    I++EL++
Sbjct: 417 -----------------------MISRFSLTENQADAILNLRLRSLRKLEEYQIKSELDN 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLD---MEDED 531
           L +E      +L+S  +    I  E+  VK+          RRT   E L        + 
Sbjct: 454 LLLEKDNLNLLLNSEKKQWDQIACEIREVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQA 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E + V +S  G++        R+ +      S +  ++ D +   F   T   +L 
Sbjct: 514 MIEKEPVTVVISKRGWI--------RSLKGHSIDLSALNFKEGDGLKIAFHAYTTERILL 565

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G  Y   V  L  G  +  G+A+  ++ +N  + I                 ++F 
Sbjct: 566 FSTDGRAYTLPVGNLLSG--RGHGEAIQLLIDINHNQDIMAAFV------QDPTCKLLFV 617

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  GN    + S  I   R GK   K+ S D +  V     +N + +  +  + + FPI 
Sbjct: 618 SNKGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIGDN-VAVVGENRKLLIFPID 676

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            I         GVR  S   G
Sbjct: 677 QIPEM--NRGKGVRLQSYKDG 695


>gi|123965239|ref|YP_001010320.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199605|gb|ABM71213.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 813

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 277/842 (32%), Positives = 449/842 (53%), Gaps = 63/842 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + 
Sbjct: 3   KEKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+Y+AL R+ QD+S +   ++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L ++  DTV +  N+DGS +EP +L A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHECFLQEIETDTVSYSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG +A+I + DI    L +II GPDFPTG  +L   GIKN Y  GRGSI IR
Sbjct: 183 PHNLGEIIDGLIALIRDKDISDSKLSKIILGPDFPTGGELLYNNGIKNVYLEGRGSITIR 242

Query: 252 GVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV   E+         R  ++++E+PYQ++KA  +EK+AELV   +I  I+D+RDESDR 
Sbjct: 243 GVIKSEEINLGKGKHKRNALIISELPYQISKAGWIEKLAELVNIGKIDGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK+ ++ +++++ LY+ T+LQS F   ++AL   KP + TL   L  F+ FRE
Sbjct: 303 GMRIVIELKKDSNPEIVISNLYKKTTLQSNFGAILLALVNGKPVQLTLRKYLNYFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + +RTKY L  A ++  +L G +IA  N+  ++ II+ S N   A+  L         
Sbjct: 363 ETIRKRTKYFLKIASEKLEILEGFSIATKNIKNIIEIIQNSENVSEAKSIL--------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LS  Q  A+L + L +LT L +  + NE+N L  + K 
Sbjct: 414 -----------------IPKLDLSNKQADAVLSMPLKKLTNLEKKQVENEINQLFEKKKY 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMV---- 539
              +L++RS LL  + +EL+ +K + +  R+T+I   +    +++  +  + ED++    
Sbjct: 457 LSTLLNNRSLLLETLIKELIELKKKFNVKRKTKILKDINQSEELDTINNQILEDLIIKDA 516

Query: 540 -VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF--SSLG 596
            +++ +  Y K++    Y+      K         E+     FI +   S+     +S G
Sbjct: 517 KISIDNRFYFKKLIYYNYK------KLLDQENKFIENKNVQKFICNIKKSLRIIGVTSSG 570

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +   W+  I +       ++  ++  +      I+ F + +S+  N Y+      G 
Sbjct: 571 KVLQIN-WKSIINNVYKLDNKILGNINPKE------IINFHDLDSNLEN-YICIICSDGK 622

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            ++  L   +  +       KL +  +I+     +QE +I++ T +G+  +F +S   + 
Sbjct: 623 FKKVLLDKDMIRSTRIFSITKLKNSTKIIDSFIYSQEENIIILTSIGRIFKFNLSNEYLK 682

Query: 717 -AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            + + S G+  ++L   +Q++S         + D               I+       S 
Sbjct: 683 PSSKQSQGILLVNLLPKEQIVSCC----KSKEKDLLYLISNKGKFFELKINEVYNSYNSK 738

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
               + +  ++ +   ++    Q+I   + K    R +   F  S++  K I   D   +
Sbjct: 739 LGYINEKIQLNNDHFIKVLTNNQYIDFETNKNKSARINLTKF--SSKPNKNILNVDFLNL 796

Query: 836 NE 837
            +
Sbjct: 797 EK 798



 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E +I  +   G  K+      +   RS +    T +    +   ++  F  +  + II++
Sbjct: 611 ENYICIICSDGKFKKVLLD--KDMIRSTRIFSITKLKNSTK---IIDSFIYSQEENIIIL 665

Query: 857 SDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +  G + +  ++   ++ +S+ ++G+++ +    E++VS  + +E ++
Sbjct: 666 TSIGRIFKFNLSNEYLKPSSKQSQGILLVNLLPKEQIVSCCKSKEKDL 713


>gi|28493458|ref|NP_787619.1| DNA topoisomerase IV subunit A [Tropheryma whipplei str. Twist]
 gi|28476499|gb|AAO44588.1| DNA gyrase subunit A-like protein [Tropheryma whipplei str. Twist]
          Length = 824

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 251/745 (33%), Positives = 387/745 (51%), Gaps = 55/745 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + + IT V +  +MQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  +K 
Sbjct: 16  SDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKA 75

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VKCAR++GEVMGK HPHG+AAIYD L RM+QD+++R+ LI+G GNFGS+  D PAA RY
Sbjct: 76  HVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRY 134

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +++DL  + VDF PNYD  F +P VL A  PN++VNG  GIAVGMAT+I
Sbjct: 135 TEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSI 194

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E V   + ++ N    L+ +M+I+ GPDFPTG++I+G+   K  YATG+GS  I
Sbjct: 195 PPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFKI 254

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    I+        +V+TE+PY V    ++EKI + V   RI  I D+ D SDR  G +
Sbjct: 255 RAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLK 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI +K   S + +++ LYR+T L+  FSVN VAL   KP+   ++ +LK F+  R  V+
Sbjct: 315 LVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFIDHRVCVI 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+K+ L   + R H++ GL +A+ ++D+ + IIR S   + AR+ LM+          
Sbjct: 375 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKC--------- 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + ++  Q   IL++RL  LT L    +++E   L    ++  +
Sbjct: 426 -----------------LNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEE 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILS  +++  I+  EL  V   L +PRRT +   +   + +    R+   V ++  G++ 
Sbjct: 469 ILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQ---VVLTTNGFIF 525

Query: 550 RVPLSVY----RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            + ++       +Q                 V    +    + +   +S G V       
Sbjct: 526 TIEVNNDLISELSQPETFDMAFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIG 585

Query: 606 LPI---GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           LP+   G   A+     + L L   E    +    + ES      +  AT  G V+R   
Sbjct: 586 LPVLDSGFVTAK-----SFLGLENDEEAVLLFELHQKES------LAIATSSGIVKRVTP 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + +          + L + D ++      +     +  T  G  + +    +     R +
Sbjct: 635 AIWPDRTER---VITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNP-QNRPA 690

Query: 722 VGVRGISLA-KGDQVISMAIVLHAD 745
            GV G++L    D+VIS       D
Sbjct: 691 RGVAGVTLKDDDDRVISFGYTEDVD 715


>gi|193216449|ref|YP_001999691.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193001772|gb|ACF06987.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 949

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 226/749 (30%), Positives = 378/749 (50%), Gaps = 40/749 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+          + I   ++ D M   +  Y+  +I  RAIPD RDGLKPV RRIL+ M
Sbjct: 1   MTKKQKEEMYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  N+ + K A+I GEVMG+YHPHG+++IY+AL RM+Q+W     LIE  GN GS+
Sbjct: 61  YGLKLYNNQAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL+K +  +L DL +  V   PN+D +  EPVVL +  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT IP HNL EV+D  + +I NP I L+ L +I++GPDFPTG VI G  GI  A
Sbjct: 181 GIAAGFATEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQA 240

Query: 241 YATGRGSIVIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + TG+G I I         E        I + E P+ V K+ ++  I  LV +K I  + 
Sbjct: 241 FETGQGKINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVK 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++RD+S+R+G  + +EL+  A+A+ I+N L   T L+  ++ NMVA++   P+   L  +
Sbjct: 301 EVRDQSNREGISIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQML 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  +++  +++  +  ++ L K   R  ++ G        DEV+R+I+ S N +    E 
Sbjct: 361 LFTYLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEA 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +++                         T   + +Q  AI ELRL +L+ + + + +NE 
Sbjct: 421 LEK-------------------------TFGFTNIQATAIAELRLYKLSKMDQLEFQNEA 455

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVR 535
             L I+I  C ++L + +     I ++L  +K E   PR + I +  +  ++  +     
Sbjct: 456 KELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRTEINTKLLAKN 515

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED    +S  GY+KR+    + +      G SG  ++D D +     +++ + ++FF++L
Sbjct: 516 EDFYFFLSKEGYIKRISKKAFSSN-----GFSGFKLKDNDAIFYYDKINSLSKLIFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +      L     +  G  + ++++L   ERI  +M   E ES       +  TK G
Sbjct: 571 GNYFIIDAHTLKENGWKDIGNHISSLVALENNERIIRVM---EIESFNTYSRFIILTKKG 627

Query: 656 NVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             ++ ++ +F        +  + L   DE+  V    +E  + +    G       + + 
Sbjct: 628 MAKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDENVVP 687

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLH 743
            ++   + G+  I   +  ++ + + +  
Sbjct: 688 EYSL-KASGISLIKTDRDQEIEAFSPISP 715



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 9/240 (3%)

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           + N  +  F +K G ++R     F   + +G    KL   D I   +     + ++  T 
Sbjct: 513 AKNEDFYFFLSKEGYIKRISKKAF---SSNGFSGFKLKDNDAIFYYDKINSLSKLIFFTN 569

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMS 759
           LG         ++       +G    SL   + ++ I   + + +   Y   I   K   
Sbjct: 570 LGNYFIIDAHTLKENG-WKDIGNHISSLVALENNERIIRVMEIESFNTYSRFIILTKKGM 628

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           A++  I     +  + K          E     +  KE+ +  +   G            
Sbjct: 629 AKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDENVVPE 688

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +    GI        +    + A  P++  +++I+++DKG   R  +  +++  R++ G
Sbjct: 689 YSLKASGISLIKT---DRDQEIEAFSPISPKNKVIIMTDKGQFKRTKMETVKLVGRSSHG 745



 Score = 41.4 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 23/211 (10%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--------ISMAI 740
               E+     +K G   R    A       +S G  G  L   D +        +S  I
Sbjct: 512 LAKNEDFYFFLSKEGYIKRISKKAF------SSNGFSGFKLKDNDAIFYYDKINSLSKLI 565

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                 +Y     +    +  +  I      + +L+N+  +   +  E            
Sbjct: 566 FFTNLGNYFIIDAHTLKENGWKD-IGNHISSLVALENNERIIRVMEIESFNTYS----RF 620

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + +++KG  K+    +F     + K      +   +E   L  V  VN    + ++   G
Sbjct: 621 IILTKKGMAKKVEIQEFDSKQIARK-RSCIPLRPNDE---LCDVRIVNKEKLLFILLTGG 676

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +  N +   S    G+ +  T +D+ +
Sbjct: 677 LYYLIDENVVPEYSLKASGISLIKTDRDQEI 707


>gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid
           E]
 gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii]
 gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22]
          Length = 738

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 379/745 (50%), Gaps = 59/745 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +IDNP   ++ +M  I+GPDFPTG +I+ +   I  AY TGRGS  +
Sbjct: 182 PHNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQ+ K+ ++E+IA L+++K+I  I+ +RDES      V
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRVV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +    R     +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ ++
Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+ YLLNK + R  +L  L I   NLDE++ IIR    P+T                 
Sbjct: 362 IRRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEPKTI---------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              +S +Q   IL  RL  L  L    I +E ++L  +      
Sbjct: 406 -------------IMERFKISAIQVEVILNTRLRSLQKLEEHAIIDEHSNLQKQQAILEK 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD---MEDEDCIVREDMVVT 541
           IL +   L  I+K+E+ +V+ +         RRT   E  L    ++    I +E + + 
Sbjct: 453 ILKNHKELWQIVKKEIKAVQTKFGLNTIIGARRTSFEEVDLTNQVVDITAFITKEPITII 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +  
Sbjct: 513 CSKMGWV--------RSLKGHNTDLSTIKYKEGDTEKFIIEAYTTDKILIISSKGRFFTL 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +  G     G ++  ++ +   + IT I+ +        N  ++ A+  G      
Sbjct: 565 LADNISKGKGTG-GVSIKLLVDIGNND-ITNILVYK------PNQLLLLASSIGKGFLVN 616

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ I   ++GK  M +      ++       + I    +  + + F I  I     +  
Sbjct: 617 SNEVIAQTKTGKQIMNIPEGYSCIACLPVNG-DSIACIGESRRLLVFNIDEIPEM--KKG 673

Query: 722 VGVRGISLAKGDQVISMAIVLHADA 746
            GV      K  +++ + I    D 
Sbjct: 674 QGVVLQRF-KNAKLLDIKIFNKQDG 697


>gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
 gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
          Length = 749

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/730 (31%), Positives = 359/730 (49%), Gaps = 66/730 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
                +   ++ +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ K A
Sbjct: 6   TEQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQD++ R  L++GQGN+GS D     AA RYTE R
Sbjct: 66  RTVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LL +L + TV++  N+DG+ QEP  L AR PN+L+NGG GIAVGMATN+  HN
Sbjct: 126 LTGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           LGEVV  C A+I +P +  DALM+ I  PDFPTG  ++  R  I   Y TGRG++ +R  
Sbjct: 186 LGEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRAT 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            H+E  +     I++ ++PYQV+ + + E+IA+ ++ K++  + DLRDESD +    ++ 
Sbjct: 246 WHLEDGN-----IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVL 300

Query: 314 LKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           + R      + ++  L+  T L+  +S  M  +    +P+   L  IL+ ++ +REE V 
Sbjct: 301 VPRSNRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L+   +R H+L GL IA  NLDE++RIIR    P                    
Sbjct: 361 RRLNHRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPV----------------- 403

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q  AIL  RL  L  L    IR E  +L  E +   ++
Sbjct: 404 ------------LMATFALSEAQAEAILNTRLRHLARLEEIQIRAEQEALAAEQQHLHEL 451

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L SR RLL +I  EL +        RRT I+  E  + +++ +    E + + +S +G++
Sbjct: 452 LQSRERLLTLIADELAADAATYGDARRTVIIEREAAVALDETELTPSEAVTLILSKMGWI 511

Query: 549 KRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                       RGGKG     + +  ++ D         ++      +  G  Y   + 
Sbjct: 512 ------------RGGKGHAIDGAALTYKNGDAYLTQISGRSNQQACLLADNGRSYTLALH 559

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S ++ G+ L + +S++                       + A  +G       ++
Sbjct: 560 GLP--SARSYGEPLSSSMSIDAS------AHIIAAAIIEPERRYLIAADNGYGFLIPGAE 611

Query: 665 FIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                +SGK  +        ++++     E DIL  +  G+    P   I   A      
Sbjct: 612 LTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPELAKGKGSQ 671

Query: 724 VRGISLAKGD 733
              I+    D
Sbjct: 672 TLAIAKKTYD 681


>gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 781

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 373/751 (49%), Gaps = 71/751 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +   SV + D     YL YAI V+ GRA+PD++DGLKPV RR+LF M ++G+    K VK
Sbjct: 31  EDDDSVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVK 90

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ + YDA+ R+AQ + LR  L++GQGNFGS DGD  AA RYTE 
Sbjct: 91  SARVVGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEA 150

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL +LG+ TVDF+PNYDGSF EP  L AR P +L+NG  GIAVGMAT IP+H
Sbjct: 151 RLTAIAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSH 210

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRG 252
           NL EV    +  I++P   LD LME I GPD+P G   I     I  AYA+GRGS+ +R 
Sbjct: 211 NLREVAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRA 270

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA--------------- 297
               E+ +    Q+V  E+P  V+ A +L +I  L+  +                     
Sbjct: 271 RYEFEEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMAS 330

Query: 298 ---DLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLFSVNMVALN-GYKPER 351
                RDES +     ++     +  D    +  L  +TSL++   +N+VA+    +P +
Sbjct: 331 QLDRARDESGKDDDVRLVFEPSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQ 390

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L  ++  +  FR   V RRT++ L KA DR H+L G  I   N+DEV+RIIR S +P+
Sbjct: 391 KSLTDLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPK 450

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A   L+ R                            LS+ Q   ILE+RL +L  L   
Sbjct: 451 AA---LIAR--------------------------FTLSDRQAEDILEIRLRQLARLEGI 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDE 530
            I  EL+ L  E +  L +L S + L   + +E+ +  ++    RRT I+        + 
Sbjct: 482 RIEQELDKLRGEREGLLKLLGSDALLRRQVIREIKADAEKHGDARRTIILAATTASRSEV 541

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             +  E + V +S  G+         R ++  G   SGVV +D D         +  S++
Sbjct: 542 AAVADEPVTVIISEKGWA--------RVRQGHGLDLSGVVFKDGDRAGSAQECRSVDSLV 593

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             SS G  +   +  LP G  +  G  L + + L  G +I  ++    D+       ++F
Sbjct: 594 IISSEGRAFTVAIASLPDG--RGMGAPLSSFVDLGGG-KIAHVLTGRADDE------LLF 644

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G        D +   ++GK  + ++    IL       ++ +   ++ G+ + FP+
Sbjct: 645 AKTSGYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPLRIAGKDHLAALSEDGRLLVFPL 704

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           + ++  A     GV+ I L   + + ++  V
Sbjct: 705 AQMKRLAS--GKGVQIIGLRDAETLRAVLAV 733


>gi|28572429|ref|NP_789209.1| DNA topoisomerase IV subunit A [Tropheryma whipplei TW08/27]
 gi|28410560|emb|CAD66947.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
          Length = 821

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 250/745 (33%), Positives = 386/745 (51%), Gaps = 55/745 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + + IT V +  +MQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  +K 
Sbjct: 13  SDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKA 72

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VKCAR++GEVMGK HPHG+AAIYD L RM+QD+++R+ LI+G GNFGS+  D PAA RY
Sbjct: 73  HVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRY 131

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +++DL  + VDF PNYD  F +P VL A  PN++VNG  GIAVGMAT+I
Sbjct: 132 TEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSI 191

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E V   + ++ N    L+ +M+I+ GPDFPTG++I+G+   K  YATG+GS  I
Sbjct: 192 PPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFKI 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    I+        +V+TE+PY V    ++EKI + V   RI  I D+ D SDR  G +
Sbjct: 252 RAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLK 311

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI +K   S + +++ LYR+T L+  FSVN VAL   KP+   ++ +LK F+  R  V+
Sbjct: 312 LVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFIDHRVCVI 371

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+K+ L   + R H++ GL +A+ ++D+ + IIR S   + AR+ LM+          
Sbjct: 372 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKC--------- 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + ++  Q   IL++RL  LT L    +++E   L    ++  +
Sbjct: 423 -----------------LNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEE 465

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILS  +++  I+  EL  V   L +PRRT +   +   + +    R+   V ++  G++ 
Sbjct: 466 ILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQ---VVLTTNGFIF 522

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE----DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            + ++              +           V    +    + +   +S G V       
Sbjct: 523 TIEVNNDLISELSQPETFDMTFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIG 582

Query: 606 LPI---GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           LP+   G   A+     + L L   E    +    + ES      +  AT  G V+R   
Sbjct: 583 LPVLDSGFVTAK-----SFLGLENDEEAVLLFELHQKES------LAIATSSGIVKRVTP 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + +          + L + D ++      +     +  T  G  + +    +     R +
Sbjct: 632 AIWPDRTER---VITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNP-QNRPA 687

Query: 722 VGVRGISLA-KGDQVISMAIVLHAD 745
            GV G++L    D+VIS       D
Sbjct: 688 RGVAGVTLKDDDDRVISFGYTEDVD 712


>gi|240047650|ref|YP_002961038.1| DNA topoisomerase IV subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239985222|emb|CAT05235.1| Topoisomerase IV subunit A [Mycoplasma conjunctivae]
          Length = 864

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 222/725 (30%), Positives = 380/725 (52%), Gaps = 38/725 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I + S+ + +   ++ YA  VI  RAIPD+RDGLKPV RRIL+ M  +G++  K Y K
Sbjct: 6   NQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+++IYDAL RM+Q+W + + L++  GN GS+D DP AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL++ +  +L+ L K+ + + PN+D S +EP VL    PN+LVNG  GIA G AT IP H
Sbjct: 126 RLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DG +A+I N  I    L  II GPDFPTG ++    GI +A++ G+G I +   
Sbjct: 186 NLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGGIVYDNGGISDAFSKGKGRISLVAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I   + D   I +++IPY + KA ++ +I ++  E+++  I ++ D+SDR G  + I+
Sbjct: 246 YEIVNKNKD-ISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISID 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+  A+ D+++N L + T +Q  +S N VA+    P+  +L  ++K ++   + + ++  
Sbjct: 305 LEADANVDLVVNYLLQKTDMQIYYSYNSVAICNNSPKLVSLSEMIKYYLDHLKNIKLKEI 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L K++ R  ++ G        DEV+++IR S N +               IKDLI  
Sbjct: 365 DYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKI------------GVIKDLI-- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q  AI ++RL RL+ + +++  +E   L  +I+   ++ + 
Sbjct: 411 -----------AHFGFTQIQAEAIAQMRLYRLSKIDQENFLSESKELENKIELLNNLKND 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +     + + L  V++    PR+T+I+  +  + +  ED I  E++   ++  GY K++
Sbjct: 460 STAFKKFLIKTLKQVQNNFGQPRKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKI 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  +              ++ +DF+  L  ++    +   ++   +      +L   S 
Sbjct: 520 SLKNFSLS-----DLDKYAIKKDDFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSY 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G  L   +   Q E I   +   E++   NN  ++  +KHG  +R  L     +   
Sbjct: 575 KNIGNDLKIEVDFQQDEYIVAQINISENK---NNSNIILVSKHGLAKRVSLDSLFNLRTK 631

Query: 672 GKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               + KL   DE++         +I + + L + ++     I    GRNS GV+  +L 
Sbjct: 632 KLTNIFKLKEHDELIGAYLTDNLANIAIISNLNRSLKVAEIDI-PIYGRNSAGVKLATLK 690

Query: 731 KGDQV 735
           KG+Q+
Sbjct: 691 KGEQI 695



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 70/206 (33%), Gaps = 13/206 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               EN     T+ G   +  +    +            ++ K D +I +  +   D  +
Sbjct: 500 LIKDENIYFGITQQGYYKKISLKNFSLSDLDK------YAIKKDDFLILLTKLNLKDKIF 553

Query: 749 ---DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              ++    +            +      ++ D   +  I  +           I+ VS+
Sbjct: 554 LVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINISENKNNSNIILVSK 613

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G  KR S        R+ K      + + +E   L+  +  ++   I ++S+    ++V
Sbjct: 614 HGLAKRVSLDSLFNL-RTKKLTNIFKLKEHDE---LIGAYLTDNLANIAIISNLNRSLKV 669

Query: 866 PVNEIRIASRATKGVVIFSTAKDERV 891
              +I I  R + GV + +  K E++
Sbjct: 670 AEIDIPIYGRNSAGVKLATLKKGEQI 695


>gi|254525688|ref|ZP_05137740.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537112|gb|EEE39565.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 813

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 263/751 (35%), Positives = 416/751 (55%), Gaps = 57/751 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +K ITS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + +
Sbjct: 2   NKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPERPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S +   +EG GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQKFSTKYPTLEGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHEGFLEEIGSETVSFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA++ N DI    L  II+GPDFPTG  ++    IK  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSRSIKELYETGKGSITI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV +IE+         +  I++TE+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVVNIEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP++  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGKPKQLNLKEYLSYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE++ +RT Y L    D+  +  GL+ A  N+ +V+ II  S N   AR +L++      
Sbjct: 362 EEIIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSVKARSKLIEN----- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I +E+  L  +  
Sbjct: 417 ---------------------FFLSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTV 542
               +L+ R  LL ++ +ELL +K + +  R+T++++ +    ++E  +  + ED +   
Sbjct: 456 YFQKLLNERGILLELLVEELLILKKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKK 515

Query: 543 SHLG-----YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS--THTSVLFFSSL 595
           + L      Y+KR+ L  Y+      K    V    ++     FI +   +  ++  ++ 
Sbjct: 516 TKLYIDNRLYLKRMILGNYK------KSFEVVNKIIDNKNIQKFICNIEKNIKLIGITNT 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+    W   I         ++  +  N+      I+ F   +    N Y+      G
Sbjct: 570 GKVFNID-WESNISRDYKLDNKILGNIHANE------IINFHSIKKETKN-YLCILNSDG 621

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIR 714
             ++    + +  +       KL +  + +      +   +++ T +G+  +F +S    
Sbjct: 622 RFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNESKYLMILTSIGRIFKFNLSNKFL 681

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
               + S G+    L   ++++S       +
Sbjct: 682 TPTSKQSQGLIITKLLPTEKIVSCCTFHDGE 712


>gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 749

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 242/792 (30%), Positives = 408/792 (51%), Gaps = 60/792 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ ITS+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY 
Sbjct: 2   KEQITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG+ A Y+A+  MAQ++S +   ++GQGN+GS D     AA RYT
Sbjct: 62  KSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQDDPKSFAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A+ L+ +L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+IP
Sbjct: 122 ESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVI 250
           +HN+ E++D  V +IDNP   L  L++II GPDF     +I  +  +   Y+TG+G    
Sbjct: 182 SHNINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKGGFKA 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           +        + D+ QI++  +PYQ + + +LE+IA+ + +K+I  + DL DE D  +  R
Sbjct: 242 QAQW-----AQDKNQIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPVR 296

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI LK    +A+ ++N L+  T LQ  + VNM  ++    P+ F+L+ +LK ++ FR+E
Sbjct: 297 LVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWLVFRKE 356

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+                
Sbjct: 357 TVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK--------------- 401

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS++Q  AILE+RL +L  L +  +  E ++L  E  + 
Sbjct: 402 --------------DIITAFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLVAEQTDI 447

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHL 545
             ILSS++RL  +IK EL+ +KDE    R + I E        +E+ +V E + V +S  
Sbjct: 448 EKILSSKTRLKTLIKNELIEIKDEFGEVRXSPIREATEAKVFSEEETLVTEPITVVLSAA 507

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R+ +      S +  R ED + D     ++   +F  S G  Y      
Sbjct: 508 GWI--------RSAKGHEIDPSSLSYRGEDVLQDYGRGKSNQVSVFLDSNGKAYSLASHS 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S +  G  +   +S + G +  + +   ++     + +++  T  G    ++  + 
Sbjct: 560 LP--SARGMGDPITGRVSADSGVKFISSLIGNDE-----DKFMIMNTA-GYGYISEFKNM 611

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +   +SGK  MK+    ++L       ++  I   + +G+ + F I  +         G 
Sbjct: 612 VSNKKSGKAFMKIPHEADLLKAIKVRDDHLYIAAVSNIGRLLIFKIDELPTLG--KGKGN 669

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I++     +    ++ HA    +     ++       L   D E   S +        
Sbjct: 670 KIINIPTAKFIAKEELMTHAQLVSEASSLRIESGKRFLTLKLKDLENYISTRAKRGNMLP 729

Query: 785 ISEERCQELKLK 796
               +  ++  +
Sbjct: 730 QGYRKVDKMIEE 741


>gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
 gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
          Length = 752

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 245/743 (32%), Positives = 375/743 (50%), Gaps = 59/743 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGKNLLPPGGGDDDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  SEMGLRPNAAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGA-VILGRTGIK 238
           GIAVGMAT+IP+HN  E+ D  + +I + D  ++ L+E  I GPDFPTG  +I  R  I 
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSII 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +Y TGRG   +R    IE       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D
Sbjct: 241 ESYKTGRGGFRVRAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLED 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           +RDES      V+I   R   A +++  +++ + L+S F +NM  L  G  P+   L  +
Sbjct: 301 IRDESAEDIRVVLIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK ++  R EV+ RR+++ L     R  +L G  IA  N+DEV+ IIR    P+      
Sbjct: 361 LKEWLDHRREVLQRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEPKPV---- 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L++ Q  AIL +RL  L  L   +IR E 
Sbjct: 417 -------------------------MMERFGLTDNQVEAILNMRLRSLRKLEEFEIRKEF 451

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--- 529
           + L  E  E   +L+S  +    +  E+  VK +         RRT+  E     +    
Sbjct: 452 DGLSKEKSEIEVLLASDEKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAEAPEADDAALQ 511

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           +  I +E + V VS  G++        RA +      S +  ++ D +   F   T   +
Sbjct: 512 QAMIEKEPITVVVSEKGWI--------RALKGHISETSTLTFKEGDALKVAFPAQTTDKI 563

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y     +LP G  +  G+ L  ++ +   + + T                +
Sbjct: 564 LIITTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTAFVHDPQRKQ------L 615

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  GN      ++ +   R GK  M L + DE   +   +  + + +  +  + V FP
Sbjct: 616 VASTAGNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSG-DHVAVVGENRKMVVFP 674

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +S I   +     GVR      G
Sbjct: 675 LSQIPEMS--RGKGVRLQRYKDG 695



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L  S  G G   +  +   + R GK I   +++  +E   LV V      D + +V +  
Sbjct: 615 LVASTAGNGFVVAETELVANTRKGKQI--MNLTTPDETKLLVPV----SGDHVAVVGENR 668

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKD 888
            ++  P+++I   SR  KGV +      
Sbjct: 669 KMVVFPLSQIPEMSRG-KGVRLQRYKDG 695


>gi|71894081|ref|YP_278189.1| DNA topoisomerase IV subunit A [Mycoplasma synoviae 53]
 gi|71850869|gb|AAZ43478.1| topoisomerase IV subunit A [Mycoplasma synoviae 53]
          Length = 860

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/739 (30%), Positives = 371/739 (50%), Gaps = 42/739 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I + S+   M+  + TY+  VI  RAIPD+RDGLKPVHRRIL+ M  +G++++KK+ K
Sbjct: 8   EKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKFKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++Y+A+  +AQ W + + L+   GN GS+D D  AA RYTE 
Sbjct: 68  SARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAAMRYTEV 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K A++++ D+ K TV F PN+D S  EP+VL + +PN+LVNG  GIA+GMAT +P H
Sbjct: 128 KLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR---GSIVI 250
           NLGE++D CV  I +P      L   + GPDFPTG VI G  GI  A   GR     I +
Sbjct: 188 NLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGGVIKGTKGIAEALENGRNEKNKIKL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                I  T G  + I +TEIPY V K  ++ +I  +++ K I  I +++D SDR G  +
Sbjct: 248 FCKYEI-YTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDGINI 306

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I L   ++ + ILN L+  T +Q  +S N + ++   P    L  ++ +++A  + V  
Sbjct: 307 LITLDINSNEESILNYLFSKTQMQITYSYNNIVIDNNSPTLMNLENLISSYIAHIKNVKT 366

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
               Y LNKA+ R  ++ G         +V+ +IR +   +                   
Sbjct: 367 LSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVN-------------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +++Q  +I ELRL +L+   ++    E   +   I    ++
Sbjct: 413 -----------NLIQVFNFTKLQAESIAELRLYKLSQTDKEIYLKEKVEVKETINIIENL 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L++       +  E+ ++K E   PR+T+I E   ++          E + V++S  G++
Sbjct: 462 LNNEKEFNNFLINEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFI 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR    V               ++++D +     V+T   +L F++LG      ++++  
Sbjct: 522 KRFSDKVLENNEW-----KNYALKEKDNLVFFSKVNTVNFLLCFTNLGNYVIVAIYQIQE 576

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  +    S +   E I +++   + E    NL V+  TK G  +R  L DF+ 
Sbjct: 577 VKWKDLGNNINLFASDIRPDEEIVSVIEVSDFEE---NLSVMLGTKQGYFKRVMLKDFLV 633

Query: 668 INRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              + K  AM L+  D ++  +    ++ ++  T+     +F  S I  ++   + G + 
Sbjct: 634 SRFTKKYTAMPLNEDDYLIKAKLTNLDSYLVAITENSIISKFSESEIMFYST-KARGSKA 692

Query: 727 ISLAKGDQVISMAIVLHAD 745
           I  + GD++ +  I  + D
Sbjct: 693 IYFSVGDKLSNFTIASYGD 711



 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 93/273 (34%), Gaps = 33/273 (12%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILS 686
           E I  I     +E  +NN  +                 I+         KLD  ++EI++
Sbjct: 453 ETINIIENLLNNEKEFNNFLINEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEIIN 512

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
           V            +K G   RF    +     +N       +L + D ++  + V   + 
Sbjct: 513 VSI----------SKNGFIKRFSDKVLENNEWKN------YALKEKDNLVFFSKVNTVNF 556

Query: 746 -------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                   +Y     Y       + L +      + ++ D  +   I     +E      
Sbjct: 557 LLCFTNLGNYVIVAIYQIQEVKWKDLGNNINLFASDIRPDEEIVSVIEVSDFEE----NL 612

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++  +++G+ KR    DF +S R  K   A  +++ +    L+     N +  ++ +++
Sbjct: 613 SVMLGTKQGYFKRVMLKDFLVS-RFTKKYTAMPLNEDD---YLIKAKLTNLDSYLVAITE 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              + +   +EI   S   +G      +  +++
Sbjct: 669 NSIISKFSESEIMFYSTKARGSKAIYFSVGDKL 701


>gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
 gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
          Length = 749

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 237/742 (31%), Positives = 382/742 (51%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S   +++ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRS--FDKEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   K Y KCARI G+VMGK HPHG+ +IYDAL R+AQ +++R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGKAYTKCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG +++  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L  G  P   +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NLDE+V+IIR +  P   ++EL+
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEP---KKELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  +IL +RL  L  L   +IR E +
Sbjct: 416 VC--------------------------FKLTENQAESILNMRLRSLRKLEEFEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGL-LDMEDED- 531
           SL IE ++  ++L+S  +   II +E+  V+           RRT   +    D+ D   
Sbjct: 450 SLKIEKEKLQNLLASNIKQWKIIAEEITRVRKSFGPDTFLGKRRTTFEDAPRHDVNDIHQ 509

Query: 532 -CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLNDYKTLSFKEGDCLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ +++   I T   +  +         + 
Sbjct: 562 VISTGGKFFTISANTLPGG--RGHGEPIRILVDMDKEHDILTAFVYNMEGKR------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN       D I   R GK  M + S D +  +    + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSEIDIIANTRKGKQVMNIKSPDSL-KLCIPVKGDYIAVVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I   +     GVR      G
Sbjct: 673 EQIPEMS--RGKGVRLQRYKDG 692


>gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 748

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/737 (30%), Positives = 376/737 (51%), Gaps = 55/737 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++S   + + I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 1   MTSLSSDIENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
                V+    R     ++++ L+  TSL++  S+NM  L+  + P    L  +LK ++A
Sbjct: 301 ENIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLA 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P++           
Sbjct: 361 HQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSV---------- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL +RL  L  L   +I  E +SL  E
Sbjct: 411 -------------------MIAEFKLSDRQAEAILNMRLRALKRLEEAEITAERDSLKEE 451

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG--LLDMEDEDCIVRE 536
                 ++ S +     +K +L +++           R+T I E      +  +  I RE
Sbjct: 452 RAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGARQTLIEEQTPAKAIPLDAMIERE 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            M V +S  G+++ +   V        K    +  ++ D    +    T   +L  +  G
Sbjct: 512 PMTVVLSKRGWIRGLKGHVDL------KSTEAMRFKEGDEADFICHAYTTDRLLIATEDG 565

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y     RLP G  +  G+ +  +L ++   +I  ++P   +        ++  +  G 
Sbjct: 566 RFYTLLADRLPGG--RGFGEPVRLMLDISNDTKIMALLPLNPEGK------LLVVSSSGR 617

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               ++++ +   R GK  +++   + ++ ++   ++ + I L  +  + + FP+S I  
Sbjct: 618 GFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKLLAFPLSQIPE 677

Query: 716 FAGRNSVGVRGISLAKG 732
            A     GV+      G
Sbjct: 678 LA--KGSGVQLQRYRGG 692


>gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 748

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/737 (30%), Positives = 374/737 (50%), Gaps = 55/737 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++S   + + I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 1   MTSLSSDIENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
                V+    R     ++++ L+  TSL++  S+NM  L+  + P    L  +LK ++A
Sbjct: 301 ENIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLA 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P++           
Sbjct: 361 HQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSV---------- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL +RL  L  L   +I  E +SL  E
Sbjct: 411 -------------------MIAEFKLSDRQAEAILNMRLRALKRLEEAEITAERDSLKEE 451

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG--LLDMEDEDCIVRE 536
                 ++ S +     +K +L +++           R+T I E      +  +  I RE
Sbjct: 452 RAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLGARQTLIEEQTPAKAIPLDAMIERE 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            M V +S  G+++ +   V        K    +  ++ D    +    T   +L  +  G
Sbjct: 512 PMTVVLSKRGWIRGLKGHVDL------KSTEAMRFKEGDEADFICHAYTTDRLLIATEDG 565

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y     RLP G  +  G+ +  +L ++   +I  ++P   +        ++  +  G 
Sbjct: 566 RFYTLLADRLPGG--RGFGEPVRLMLDISNDTKIMALLPLNPEGK------LLVVSSSGR 617

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRV 715
               ++++ +   R GK  +++   + ++ ++      + I L  +  + + FP+S I  
Sbjct: 618 GFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEGHDHIALIGENRKLLAFPLSQIPE 677

Query: 716 FAGRNSVGVRGISLAKG 732
            A     GV+      G
Sbjct: 678 LA--KGSGVQLQRYRGG 692


>gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis]
          Length = 494

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 233/517 (45%), Positives = 335/517 (64%), Gaps = 27/517 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L+    +  II++EL  +     TPRRT+I     D+
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKIEMDAGDV 494


>gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 748

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 222/737 (30%), Positives = 376/737 (51%), Gaps = 55/737 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++S   + + I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 1   MTSLSSDIENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
                V+    R     ++++ L+  TSL++  S+NM  L+  + P    L  +LK ++A
Sbjct: 301 ENIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLA 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P++           
Sbjct: 361 HQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSV---------- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL +RL  L  L   +I  E +SL  E
Sbjct: 411 -------------------MIAEFKLSDRQAEAILNMRLRALKRLEEAEITAERDSLKEE 451

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEG--LLDMEDEDCIVRE 536
                 ++ S +     +K +L +++           R+T I E      +  +  I RE
Sbjct: 452 RAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGARQTLIEEQTPAKAIPLDAMIERE 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            M V +S  G+++ +   V        K    +  ++ D    +    T   +L  +  G
Sbjct: 512 PMTVVLSKRGWIRGLKGHVDL------KSTEAMRFKEGDEADFICHAYTTDRLLIATEDG 565

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y     RLP G  +  G+ +  +L ++   +I  ++P   +        ++  +  G 
Sbjct: 566 RFYTLLADRLPGG--RGFGEPVRLMLDISNDTKIMALLPLNPEGK------LLVVSSSGR 617

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715
               ++++ +   R GK  +++   + ++ ++   ++ + I L  +  + + FP+S I  
Sbjct: 618 GFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRKLLAFPLSQIPE 677

Query: 716 FAGRNSVGVRGISLAKG 732
            A     GV+      G
Sbjct: 678 LA--KGSGVQLQRYRGG 692


>gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum
           HRM2]
 gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2]
          Length = 753

 Score =  457 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 234/722 (32%), Positives = 364/722 (50%), Gaps = 58/722 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G          + +YL Y++ VIL RA+P + DGLKPV RRI++ M Q+G+  + K+ K
Sbjct: 10  EGFEKQPFDTFAETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLGLSSSSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  +AQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL +L     ++ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 130 SRLSTYADILLSELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIR 251
           HNL EV    V ++D+PD  +D L E I+GPD+PT A I+   + I+  Y TG G I +R
Sbjct: 190 HNLTEVAQALVHLLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYKTGNGRIKMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY-RV 310
              H+     D   IVVT +P+  +   +LE+IA  ++ K++  + DLRDESD +   R+
Sbjct: 250 AKFHV-----DDGDIVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDESDHEEPTRL 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           VI  K   +   +++ L+  T L+  + +NM  +    +PE   L  IL  ++AFR + V
Sbjct: 305 VIIPKARTNTTALMDHLFATTDLERSYRINMNMIGINGRPEVKPLQVILSEWLAFRIDTV 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R  + L+K  DR H+L GL  A  N+DE++ IIR S  P+     LM+R         
Sbjct: 365 RKRISHRLDKVNDRLHLLEGLLTAFLNIDEIIAIIRNSDEPKPV---LMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q  AILE++L  L  L    I+ E +SL  E ++   
Sbjct: 413 -----------------FNLSDRQATAILEIKLRNLAKLEEIKIQAEKDSLDSERQQLEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGY 547
           IL+S  RL  +IK+E+ +        RR+ I E        +E+ I  E M V +S  G+
Sbjct: 456 ILASDKRLRTLIKREIQADAKTHGDLRRSPIFERKEAEAFSEEEVIQIEPMTVILSKNGW 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
                    R  +        +  +  D +       ++   +FF S G  Y      L 
Sbjct: 516 A--------RTAKGHDIDIEKLKFKFGDDLLVTAPTMSNRPAVFFDSSGRSYSIATHTL- 566

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S +  G+ L   L+L     I +++   +D+        +  T  G     + S+ I 
Sbjct: 567 -ASARTMGEPLTGRLTLKPENHIISLVTGEDDD------LFLLYTNTGFGFITRFSNLIA 619

Query: 668 INRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +R+GK  + ++   E ++ E     + + +   T  G+ + FP+  + +        + 
Sbjct: 620 KSRTGKAVLTVEEFSEFMAPEPLKNPETDLLAAVTTSGRLIIFPVREMPIMEKGKGNKII 679

Query: 726 GI 727
           GI
Sbjct: 680 GI 681


>gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis]
 gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis]
 gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis]
 gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis]
 gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis]
 gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis]
 gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis]
 gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis]
 gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis]
          Length = 493

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 233/516 (45%), Positives = 334/516 (64%), Gaps = 27/516 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           L+    +  II++EL  +     TPRRT+I     D
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKIEMDAGD 493


>gi|284931407|gb|ADC31345.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str. F]
          Length = 796

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 239/739 (32%), Positives = 400/739 (54%), Gaps = 48/739 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQTWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL    + +L+++ K+TV+F  N+D S  EP +L +  PN+LVNG  GIA G ATNIP
Sbjct: 122 EARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  ID+P+  L+++++++ GPDFPTG +IL   GIKNAY TG+G IVIR
Sbjct: 182 PFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                     + +Q+VVT+IP++ NKA+++  I E++   ++  + ++RDESDR G RVV
Sbjct: 242 AK-----IVNENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVV 296

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++        +  I N LY+YT LQ  +S N V ++  KP + ++   L +++     ++
Sbjct: 297 LQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTIL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                + L K + R  V+ GL  A + +D+++ II+ S + + A   L+ +         
Sbjct: 357 RNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINK--------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S +Q  AI+ LRL RLT      ++ E  SL   IK+   
Sbjct: 408 -----------------YQFSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE--DMVVTVSHLGY 547
           +L  ++ L   +K+ L S K   +T RR+ I   +  +   +  + E  ++ +  S  G 
Sbjct: 451 LLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYLVSSVDGL 510

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +    Y   ++     + + ++ +D+++DL  VS+   V F ++ G V      ++ 
Sbjct: 511 IKTI---AYDQNKQ--LNPTSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIK 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              P+  G  +  + ++   E+I  ++     E S  N  +V  +K+G +++  ++D + 
Sbjct: 566 QAKPREIGMDINELTTIKDNEKIVKLV-----ELSDQNDRIVLVSKYGMIKQISVNDLVN 620

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           I  +     M L   DE++     +  N ++++ TK    +RF I+ + +  G  S+GVR
Sbjct: 621 IKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNL-TGLKSMGVR 679

Query: 726 GISLAKGDQVISMAIVLHA 744
            I L   D+VI    + ++
Sbjct: 680 AIKLKTNDEVIGFDQIKNS 698



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K   A+ R I  D  E+T++K++  +   +      EL  +   I+ VS+ G  K+ S  
Sbjct: 563 KIKQAKPREIGMDINELTTIKDNEKIVKLV------ELSDQNDRIVLVSKYGMIKQISVN 616

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           D  ++ +S K      +   +E+  + A    + N ++I+++     +R  +NE+ +   
Sbjct: 617 DL-VNIKSTKPTTCMSLKDDDEL--VCANLISDPNAELIIITKNAYALRFFINEVNLTGL 673

Query: 876 ATKGVVIFSTAKDERVVSVERIRES 900
            + GV       ++ V+  ++I+ S
Sbjct: 674 KSMGVRAIKLKTNDEVIGFDQIKNS 698



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 95/254 (37%), Gaps = 16/254 (6%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   E          + ++  G ++        Q+N     ++K+   D +  +   +  
Sbjct: 488 LVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLN---PTSLKIKQDDYLSDLIKVSSL 544

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDE 750
           N +   T  G  V      I+    R  +G+    L      ++++ +       +D ++
Sbjct: 545 NKVAFITNYGNVVVINAHKIKQAKPRE-IGMDINELTTIKDNEKIVKLV----ELSDQND 599

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER--CQELKLKEQFILTVSEKGF 808
           RI  +      +++   D   I S K  + +     +E      +      ++ +++  +
Sbjct: 600 RIVLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAY 659

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
             R    +  ++     G+RA  +   +E+     +   N  DQ++LV +K  + ++  +
Sbjct: 660 ALRFFINEVNLTGLKSMGVRAIKLKTNDEVIGFDQIK--NSIDQLVLVKNK-QIKKLKAS 716

Query: 869 EIRIASRATKGVVI 882
            I   SRAT+G  +
Sbjct: 717 LIENQSRATQGKNL 730


>gi|294660439|ref|NP_853201.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812099|gb|AAP56769.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930683|gb|ADC30622.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(high)]
          Length = 796

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/739 (32%), Positives = 400/739 (54%), Gaps = 48/739 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL    + +L+++ K+TV+F  N+D S  EP +L +  PN+LVNG  GIA G ATNIP
Sbjct: 122 EARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  ID+P+  L+++++++ GPDFPTG +IL   GIKNAY TG+G IVIR
Sbjct: 182 PFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                     + +Q+VVT+IP++ NKA+++  I E++   ++  + ++RDESDR G RVV
Sbjct: 242 AK-----IVNENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVV 296

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++        +  I N LY+YT LQ  +S N V ++  KP + ++   L +++     ++
Sbjct: 297 LQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTIL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                + L K + R  V+ GL  A + +D+++ II+ S + + A   L+ +         
Sbjct: 357 RNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINK--------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S +Q  AI+ LRL RLT      ++ E  SL   IK+   
Sbjct: 408 -----------------YQFSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE--DMVVTVSHLGY 547
           +L  ++ L   +K+ L S K   +T RR+ I   +  +   +  + E  ++ +  S  G 
Sbjct: 451 LLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYLVSSVDGL 510

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +    Y   ++     + + ++ +D+++DL  VS+   V F ++ G V      ++ 
Sbjct: 511 IKTI---AYDQNKQ--LNPTSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIK 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              P+  G  +  + ++   E+I  ++     E S  N  +V  +K+G +++  ++D + 
Sbjct: 566 QAKPREIGMDINELTTIKDNEKIVKLV-----ELSDQNDRIVLVSKYGMIKQISVNDLVN 620

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           I  +     M L   DE++     +  N ++++ TK    +RF I+ + +  G  S+GVR
Sbjct: 621 IKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVNL-TGLKSMGVR 679

Query: 726 GISLAKGDQVISMAIVLHA 744
            I L   DQVI    + ++
Sbjct: 680 AIKLKTNDQVIGFDQIKNS 698



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K   A+ R I  D  E+T++K++  +   +      EL  +   I+ VS+ G  K+ S  
Sbjct: 563 KIKQAKPREIGMDINELTTIKDNEKIVKLV------ELSDQNDRIVLVSKYGMIKQISVN 616

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           D  ++ +S K      +   +E+  + A    + N ++I+++     +R  +NE+ +   
Sbjct: 617 DL-VNIKSTKPTTCMSLKDDDEL--VCANLISDPNAELIIITKNAYALRFFINEVNLTGL 673

Query: 876 ATKGVVIFSTAKDERVVSVERIRES 900
            + GV       +++V+  ++I+ S
Sbjct: 674 KSMGVRAIKLKTNDQVIGFDQIKNS 698



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 95/254 (37%), Gaps = 16/254 (6%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   E          + ++  G ++        Q+N     ++K+   D +  +   +  
Sbjct: 488 LVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLN---PTSLKIKQDDYLSDLIKVSSL 544

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDE 750
           N +   T  G  V      I+    R  +G+    L      ++++ +       +D ++
Sbjct: 545 NKVAFITNYGNVVVINAHKIKQAKPRE-IGMDINELTTIKDNEKIVKLV----ELSDQND 599

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER--CQELKLKEQFILTVSEKGF 808
           RI  +      +++   D   I S K  + +     +E      +      ++ +++  +
Sbjct: 600 RIVLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAY 659

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
             R    +  ++     G+RA  +   +++     +   N  DQ++LV +K  + ++ V+
Sbjct: 660 ALRFFINEVNLTGLKSMGVRAIKLKTNDQVIGFDQIK--NSIDQLVLVKNK-QIKKLKVS 716

Query: 869 EIRIASRATKGVVI 882
            I   SRA +G  +
Sbjct: 717 LIENQSRANQGKSL 730


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score =  456 bits (1172), Expect = e-125,   Method: Composition-based stats.
 Identities = 245/740 (33%), Positives = 382/740 (51%), Gaps = 58/740 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++I +S+   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG KPVHRRI+  M +
Sbjct: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++DG
Sbjct: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +++PN+L NG  GI
Sbjct: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241
           AVGMAT+IP+HN+ E+ +  +A+IDNP+I ++ L+E I GPDFPTG +I+  R  I  +Y
Sbjct: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRG   +R    +E+       IVVTEIPYQV K+ ++EKIAEL+  KRI  + D+RD
Sbjct: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKA 360
           ES      V+    R    D+++  ++  + +++ F +NM  L+  + P+   L GILK 
Sbjct: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+         
Sbjct: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------- 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E Q  AIL LRL  L  L    I++EL++L
Sbjct: 417 ----------------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE---GLLDMEDEDC 532
             E ++   +L+S  +    I  E+  VK+          RRT   E          +  
Sbjct: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +E + V +S+ G++        R+ +      S +  ++ D +       T   +L  
Sbjct: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G  Y      L  G  +  G+A+  ++ LN  + I T   +       +   ++  +
Sbjct: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVS 618

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             GN    + S+ I   R GK  +K+ S +++  V   T  + + +  +  + + F I  
Sbjct: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677

Query: 713 IRVFAGRNSVGVRGISLAKG 732
           I   +     GVR  S   G
Sbjct: 678 IPEMS--RGKGVRLQSYKDG 695


>gi|289770512|ref|ZP_06529890.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
 gi|289700711|gb|EFD68140.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
          Length = 788

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 228/643 (35%), Positives = 345/643 (53%), Gaps = 53/643 (8%)

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           DAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PY
Sbjct: 146 DALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQN-RQCLVVTELPY 204

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTS 332
           Q N   + +KIA+LV++ ++  IAD+RDE S R G R+VI LKR A A V+LN LY++T 
Sbjct: 205 QTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTD 264

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS F  NM+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  
Sbjct: 265 LQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLK 324

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+  +DEV+ +IR S   E AR  LM                            + + E+
Sbjct: 325 ALDAIDEVIALIRRSDTVEIARGGLMD--------------------------LLEIDEI 358

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AILE++L RL  L R  I  E + L  +I E  +IL+S  R  GI+ +EL ++ ++ 
Sbjct: 359 QANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKY 418

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R+T+++    DM  ED I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++
Sbjct: 419 GDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLK 478

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           ++D V   F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  
Sbjct: 479 EDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQ 538

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSV 687
           I    + E+     Y+V ATK G V++  L D+      G IA+ L        DE++  
Sbjct: 539 IRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGA 595

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVL---- 742
           E  + E+D+LL +K  Q +RF  S   +   GR + GV+G+S  +GD+++SM +V     
Sbjct: 596 ELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREGDELLSMNVVRAGTF 655

Query: 743 ---HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                D  Y +R    ++    R  +     +I   +        + E            
Sbjct: 656 VFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEE---------HDE 706

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           IL ++  G   RT     R + R   G++  ++ K + +  + 
Sbjct: 707 ILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKRDAVVGIA 749



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 18/265 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-----EDF 576
           E +  +           +V  +  G VK+ PL  Y + R G  G   + +R+     +D 
Sbjct: 534 ETIAQIRAIRDYEAVPYLVLATKAGLVKKTPLKDYDSPRSG--GVIAINLREQADGSDDE 591

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +VS    +L  S      +       +  P  R  + +  +S  +G+ + ++   
Sbjct: 592 LIGAELVSAEDDLLLISKKAQSIRFTASDDTL-RPMGRATSGVKGMSFREGDELLSMNVV 650

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693
                     +V  AT  G  +R  + ++    R G   K A  ++ R  ++      + 
Sbjct: 651 RA------GTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEH 704

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++IL  T  G  +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + +E   
Sbjct: 705 DEILAITLSGGVIRTRVNGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDG 763

Query: 754 YMKHMSAQRRLISGDTEEITSLKND 778
            +          +  T+E  +   +
Sbjct: 764 DVAVDETAEGAATTGTDEGEAPSAE 788


>gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis]
          Length = 492

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 232/515 (45%), Positives = 333/515 (64%), Gaps = 27/515 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
           L+    +  II++EL  +     TPRRT+I     
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKIEMDAG 492


>gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 813

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 235/766 (30%), Positives = 377/766 (49%), Gaps = 71/766 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++ +  + +  +     +++      +YL YAI+V+ GRA+PD+ DG+KPV RRIL+ M 
Sbjct: 27  SDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAMK 86

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K VK AR+ GEV+GKYHPHG+ A YDA+ R+AQD+++R  L++GQGNFGS D
Sbjct: 87  RLGLNPDVKTVKSARVVGEVLGKYHPHGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSAD 146

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LL +L K TV F PNYDG+ +EPV+L AR P +L+NG  G
Sbjct: 147 GDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSSG 206

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNA 240
           IAVGMAT IP+HNL EV +  + VI NP+I  D L+EI++GPDFP GA VI   + IKN 
Sbjct: 207 IAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKNV 266

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD----- 295
           Y +G G++ +R   H E+ S  + Q+V   +PY+V+   ++ ++  L   K         
Sbjct: 267 YRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSLT 326

Query: 296 -------------IADLRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVN 340
                        ++ +RDES  +    ++     +    + +++ +   TSL++    N
Sbjct: 327 AKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKFN 386

Query: 341 MVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           +V +    KP +  L  IL  +V+FR   V  R++  LN+A  R H L G  I + +++E
Sbjct: 387 LVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIEE 446

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           V+RIIR + +P   ++EL+                              LS+ Q   ILE
Sbjct: 447 VIRIIRGTDDP---KKELITH--------------------------FGLSDTQAEDILE 477

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           ++L +L  L    +R EL  L  E +    +L+   +L   + +E+    D     RRT 
Sbjct: 478 IKLRQLASLDEVKLRKELEKLRNEAERLRGLLTDEKKLRREVTKEIRQDIDTYGDERRTL 537

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I E          ++ E + V VS  G++        R+++  G     +  +  D    
Sbjct: 538 IEEAKGA-SIAKQVIDEPVTVIVSEKGFL--------RSRQGHGFDARAMNFKLGDKYRC 588

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
                +  ++   S+ G +Y   V  LP  S +  G  +   +    G+     +PF + 
Sbjct: 589 SMECRSVDNLYILSNTGRIYSIPVSSLP--SARGEGTHVSAFVQFQDGD-----VPF-DY 640

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILL 698
                +  ++F +        K+SD     R GK    LD   + L V+        I  
Sbjct: 641 ICGAPDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSFFILD-GAKPLPVQVSTPLTGWIAA 699

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            +  G+ V F    +R  +     G   ++L   +++++   +   
Sbjct: 700 LSSSGRLVVFTTDELRALSS-GGKGTTIMALQDDEKLVAAVPISPN 744



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 9/191 (4%)

Query: 710 ISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           +S       R   G   R ++   GD+          D  Y        +      L S 
Sbjct: 559 VSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLPSA 618

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
             E           +G++  +        +  +L  S+   G      D  +  R GK  
Sbjct: 619 RGEGTHVSAFVQFQDGDVPFDYI--CGAPDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSF 676

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
              D +K      +    P+     I  +S  G L+    +E+R  S   KG  I +   
Sbjct: 677 FILDGAKPL---PVQVSTPLTG--WIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQD 731

Query: 888 DERVVSVERIR 898
           DE++V+   I 
Sbjct: 732 DEKLVAAVPIS 742


>gi|157412343|ref|YP_001483209.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386918|gb|ABV49623.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 813

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 262/751 (34%), Positives = 418/751 (55%), Gaps = 57/751 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +K ITS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ +
Sbjct: 2   NKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDRPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S +   +EG GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLEGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV F  N+DGS +EP +L A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHKGFLEEIGSETVSFSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA++ N DI    L  II+GPDFPTG  ++    IK  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSHAIKELYETGKGSITI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV ++E+         +  I++TE+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVVNMEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP++  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGKPKQLNLKEYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    D+  +  GL+ A  N+ +V+ II  S N E AR +L++      
Sbjct: 362 EETIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSEKARSKLIEN----- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I +E+  L  +  
Sbjct: 417 ---------------------FFLSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTV 542
               +L+ R  LL ++ +ELL +K + +  R+T++++ +    ++E  +  + ED +   
Sbjct: 456 YFQKLLNERGLLLELLVEELLILKKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKK 515

Query: 543 SHLG-----YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS--THTSVLFFSSL 595
           + L      Y+KR+ L  Y+      K    V    ++     FI +   +  ++  ++ 
Sbjct: 516 TKLYIDNRLYLKRMILGNYK------KSFEVVNKIIDNKNIQKFICNIEKNIKLIGITNT 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+    W   I         ++  +  N+      I+ F   +    N Y+      G
Sbjct: 570 GKVFNID-WESSINKDYKLDNKILGNIHANE------IINFHSIKKETKN-YLCILNSDG 621

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIR 714
             ++    + +  +       KL +  + +      +   +++ T +G+  +F +S    
Sbjct: 622 RFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNESKYLMILTSIGRIFKFNLSNKFL 681

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
               + S G+    L   ++++S       +
Sbjct: 682 TPTSKQSQGLIITKLLPTEKIVSCCTFHDGE 712


>gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium
           MedeBAC35C06]
          Length = 743

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 243/744 (32%), Positives = 390/744 (52%), Gaps = 61/744 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K  +++S+    +++YL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY K
Sbjct: 3   KQESNISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQD+S +  L++GQGN+GS D     AA RYTE
Sbjct: 63  SARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQDDPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  L+D+L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+I +
Sbjct: 123 SKLTKFAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISS 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HN+ EV+D  + V++NP      L++II+GPDF   A I+     +   Y+TGRG   I+
Sbjct: 183 HNINEVLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQ 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310
                E        IV+T +PYQ + + +LE+IA+ +  K++  I DL DE D  +  R+
Sbjct: 243 ANWDKEGND-----IVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRL 297

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VI LK    +AD ++N L+  T LQ  +  NM  ++    P  F L  +LK ++ FR+  
Sbjct: 298 VISLKSNRVNADDVMNHLFATTDLQKSYRFNMNLISLSGNPRVFALDELLKEWIKFRKIT 357

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V R+ +  L++  DR H+L GLAI   N+DEV++IIR S  P   ++EL ++        
Sbjct: 358 VTRKLENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEP---KKELSKK-------- 406

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q  AILE+RL +L  L +  I  E N L  E  E  
Sbjct: 407 ------------------FKLSDIQVNAILEIRLRQLAKLEQIKIETEQNKLSEEQSEIE 448

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLG 546
            IL+SRSRL  +IK EL+ +K E    R++ I+E        +E+ IV E + + +S  G
Sbjct: 449 KILASRSRLKTLIKNELIEIKQEFGEERKSPIIESSSAKVFSEEETIVTEPVTIVLSKAG 508

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        R+ +      S +  R +D + D     ++ + +F +S G  Y      L
Sbjct: 509 WI--------RSAKGHEIDPSSLSYRGDDLLQDFCRGKSNQNTVFLASNGKAYTLSAHSL 560

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S +  G  +   +S + G      + F            V +   G    +  +  I
Sbjct: 561 P--SARGLGDPITGRISADSG------IIFKSCAIGEQEDKYVVSNSAGFGYISDFASMI 612

Query: 667 QINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              +SG+  MK+    ++  +++       I+  + +G+ + F I  +          + 
Sbjct: 613 SNKKSGRAFMKVPEGADVHKAIKYREDHEFIVAISNIGRMLIFNIEELPFLQKGKGNKII 672

Query: 726 GI---SLAKGDQVISMAIVLHADA 746
            I       G++ ++   +L  ++
Sbjct: 673 NIPTPKFKSGEESMTHIELLAPES 696


>gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis]
 gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis]
          Length = 485

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 231/508 (45%), Positives = 331/508 (65%), Gaps = 27/508 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AILELRL +LTGL  D ++ E + L  +I     +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT 518
           L+    +  II++EL  +     TPRRT
Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRT 485


>gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 704

 Score =  452 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 231/750 (30%), Positives = 377/750 (50%), Gaps = 70/750 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D     AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGI 237
             GIAVGMAT+IP HN+ EVV+  + +I++P   L  LM+ ++GPDFPT A I+   + +
Sbjct: 121 VTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSDL 180

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V H E +      IV++ +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 181 EKIYQTGRGSIKMRAVWHKEGSD-----IVISALPHQVSGAKLLEQIAGQMRAKKLPMVE 235

Query: 298 DLRDESDRQGYRVVIELKRG--ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +    ++ + R      D ++N L+  T L+  F VN+  +    +PE   L
Sbjct: 236 DLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNNRPEVKGL 295

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 296 TQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEP---K 352

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            +S++Q  AIL+ +L  L  L    IR
Sbjct: 353 GILMER--------------------------FGISDIQADAILDTKLRHLAKLEEVKIR 386

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDC 532
            E ++L  E  +  ++L S  RL  ++K+EL +  ++    RR+ IVE      + + D 
Sbjct: 387 GEQDALDKERAKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPIVERAEAKALTERDL 446

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +        +  +  D         ++  V F 
Sbjct: 447 MPNEMITVVISEKGWV--------RHAKGHEVDCHSLNYKSGDNYLAHACGKSNQQVAFL 498

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP  S + +G+ +   L++ +G  I  ++   +D+        +  +
Sbjct: 499 GSDGRSYSLEAHTLP--SARGQGEPITGRLNITEGSSIRQVIMGEDDQ------LWLVGS 550

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K SD +  NRSGK  + L +  E+L+ +       ++IL  T  G+ + FPI
Sbjct: 551 DAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVNDLQHDEILAVTNQGRMLLFPI 610

Query: 711 SAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +   +      +  I        ++V+S  + + + +           + A +R +  
Sbjct: 611 KDLPQLSKGKGNKIINIPSAKAKAREEVVSHLLAIPSGSSI--------TLYAGKRKLGL 662

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKE 797
              ++ + + +    G +     Q +   E
Sbjct: 663 KPTDLDNFRGERGRRGALLPRGLQRVTQIE 692



 Score = 44.5 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   +Q  L  S+ G+G      D    NRSGK +             L+A  
Sbjct: 532 SSIRQVIMGEDDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVNLP-----NNSELLAPQ 586

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
            VND  +D+I+ V+++G ++  P+ ++   S+  KG  I +         E VVS
Sbjct: 587 AVNDLQHDEILAVTNQGRMLLFPIKDLPQLSKG-KGNKIINIPSAKAKAREEVVS 640


>gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 939

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 235/766 (30%), Positives = 379/766 (49%), Gaps = 71/766 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++ +  + +  +     +++      +YL YAI+V+ GRA+PD+ DG+KPV RRIL+ M 
Sbjct: 153 SDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAMK 212

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K VK AR+ GEV+GKYHPHG++A YDA+ R+AQD+++R  L++GQGNFGS D
Sbjct: 213 RLGLNPDVKTVKSARVVGEVLGKYHPHGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSAD 272

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LL +L K TV F PNYDG+ +EPV+L AR P +L+NG  G
Sbjct: 273 GDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSSG 332

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNA 240
           IAVGMAT IP+HNL EV +  + VI NP+I  D L+EI++GPDFP GA VI   + IKN 
Sbjct: 333 IAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKNV 392

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD----- 295
           Y +G G++ +R   H E+ S  + Q+V   +PY+V+   ++ ++  L   K         
Sbjct: 393 YRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSLT 452

Query: 296 -------------IADLRDESDRQGYRVVI--ELKRGASADVILNQLYRYTSLQSLFSVN 340
                        ++ +RDES  +    ++     +    + +++ +   TSL++    N
Sbjct: 453 AKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKFN 512

Query: 341 MVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           +V +    KP +  L  IL  +V+FR   V  R++  LN+A  R H L G  I + +++E
Sbjct: 513 LVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIEE 572

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
           V+RIIR + +P   ++EL+                              LS+ Q   ILE
Sbjct: 573 VIRIIRGADDP---KKELITH--------------------------FGLSDTQAEDILE 603

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           ++L +L  L    +R EL  L  E +    +L+   +L   + +E+    D     RRT 
Sbjct: 604 IKLRQLASLDEVKLRKELEKLRNEAERLRGLLTDEKKLRREVTKEIRQDIDTYGDERRTL 663

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I E          ++ E + V VS  G++        R+++  G     +  +  D    
Sbjct: 664 IEEAKGA-SIAKQVIDEPVTVIVSEKGFL--------RSRQGHGFDARAMNFKLGDKYRC 714

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
                +  ++   S+ G +Y   V  LP  S +  G  +   +    G+     +PF + 
Sbjct: 715 SMECRSVDNLYILSNTGRIYSIPVSSLP--SARGEGTHVSAFVQFQDGD-----VPF-DY 766

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILL 698
               ++  ++F +        K+SD     R GK    LD   + L V+        I  
Sbjct: 767 ICGASDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSFFILD-GAKPLPVQVSTPLTGWIAA 825

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            +  G+ V F    +R  +     G   ++L   +++++   +   
Sbjct: 826 LSSSGRLVVFTTDELRALSS-GGKGTTIMALQDDEKLVAAVPISPN 870



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 9/191 (4%)

Query: 710 ISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           +S       R   G   R ++   GD+          D  Y        +      L S 
Sbjct: 685 VSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLPSA 744

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
             E           +G++  +        +  +L  S+   G      D  +  R GK  
Sbjct: 745 RGEGTHVSAFVQFQDGDVPFDYI--CGASDTVLLFTSDAAMGFFCKMSDLAVRQRGGKSF 802

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
              D +K      +    P+     I  +S  G L+    +E+R  S   KG  I +   
Sbjct: 803 FILDGAKPL---PVQVSTPLTG--WIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQD 857

Query: 888 DERVVSVERIR 898
           DE++V+   I 
Sbjct: 858 DEKLVAAVPIS 868


>gi|295094763|emb|CBK83854.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus sp. ART55/1]
          Length = 758

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 236/755 (31%), Positives = 375/755 (49%), Gaps = 50/755 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + K
Sbjct: 3   EKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPHRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFG+VDG   AA RYTE 
Sbjct: 62  CARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYTEA 121

Query: 134 RLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           R+ K      + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIPT
Sbjct: 122 RISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPT 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HNLGEV+D  VA +++P+I+L+ L++++ GPDF TG +I      + N YATG G I +R
Sbjct: 182 HNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIKVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           G   +      R+ I VTE+PY +    A  L+ +AELVR + +  + D+ D  D+ G  
Sbjct: 242 GKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNGEC 301

Query: 310 VVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           + I++K+G S +    I+N LY+  +L+  F VN+  +N  KPE   L  ILK +  F+ 
Sbjct: 302 LCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGKPEVMGLKKILKVYTDFKY 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   + + LL +  +   + +GL  AV  +D ++ I+R S     A+  LM    +   
Sbjct: 362 GLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTSNVK 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            +      D           +  +E Q  AIL +RL +L GL  + ++ EL      IK+
Sbjct: 422 FRFKGSEADAK--------FLCFTEKQADAILAMRLQKLIGLEINALKKELADAEKLIKK 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              ++ SR  +   +  ++L +K +   PRRT+I      +  +  +V  D+ V +    
Sbjct: 474 YTRLMESRDAMKQQMIDDMLEIKAKYAIPRRTQIHNYGTVVVKKAEVVATDVAVLLDRFY 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K V  +VY             + +D               +  F+    VY  KV  +
Sbjct: 534 YIKVVDANVYEKN-------IDQITKD---YRFAVKCQNLDRIAVFADNNQVYTIKVADI 583

Query: 607 P----------------IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                            IG    +G  +    ++N  E I  +       +      ++F
Sbjct: 584 IKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDK----LLF 639

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +K G  +    S F    R+   A      D+I+ +   ++ + I+  ++ G  +R   
Sbjct: 640 VSKQGLAKVVDGSAFDTTRRA---ANASKVGDDIIYIGKISEGDFIIAQSEKGYYIRVDA 696

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           + I     + + GVR I+L   D + S+ +    D
Sbjct: 697 AEIPEKG-KGAAGVRLINLEGDDVLESVFVGSTKD 730



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS++G  K      F  + R+    +  D         ++ +  +++ D II  S+K
Sbjct: 637 LLFVSKQGLAKVVDGSAFDTTRRAANASKVGD--------DIIYIGKISEGDFIIAQSEK 688

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G  IRV   EI    +   GV + +   D+ + SV
Sbjct: 689 GYYIRVDAAEIPEKGKGAAGVRLINLEGDDVLESV 723



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 495 SRLLGIIKQELLSVKD--ELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRV 551
            +LL + KQ L  V D    DT RR      + D       + E D ++  S  GY  RV
Sbjct: 635 DKLLFVSKQGLAKVVDGSAFDTTRRAANASKVGDDIIYIGKISEGDFIIAQSEKGYYIRV 694

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             +    + +G  G   + +  +D +  +F+ ST  +     +          R+  G  
Sbjct: 695 DAAEIPEKGKGAAGVRLINLEGDDVLESVFVGSTKDTFKVGDNE-----IIFTRVKPGKR 749

Query: 612 QARGKAL 618
             +G  L
Sbjct: 750 GGKGSKL 756


>gi|47459295|ref|YP_016157.1| DNA topoisomerase IV subunit A [Mycoplasma mobile 163K]
 gi|47458625|gb|AAT27946.1| topoisomerase IV subunit A [Mycoplasma mobile 163K]
          Length = 858

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 241/746 (32%), Positives = 382/746 (51%), Gaps = 45/746 (6%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + ++E ++K +   S+   M N Y  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+
Sbjct: 1   MKTNELKDKFLLQ-SLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGL 59

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K + K AR+ G+V+GKYHPHG+++IY+A+ RM+Q+W + + LI+  GN GS+D DP 
Sbjct: 60  TSEKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPA 119

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K +  LL D+  DTV F  N+D S +EP VL A +PN+LVNG  GIA G
Sbjct: 120 AAMRYTEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAG 179

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            AT IP HNLGEV+DG +A I NP+I ++ L  II+GPDFPTG +I G  GIK A  +GR
Sbjct: 180 FATEIPPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAFSGR 239

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I I     +      + QIV+TEIPY V K+ ++ +I E+  +K I  + ++RDE++R
Sbjct: 240 GRITITSKYEV-----HKNQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNR 294

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G ++VI+L+ GA A  I+  L + T LQ  +S N +A++   P    L  +++AF+   
Sbjct: 295 DGIKIVIDLEAGADASKIMKFLMQKTELQLYYSYNNIAIHNNAPVLMNLHDLIQAFLDHV 354

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + +   +  + L K   R  ++ G        D+V+ +IR S   +              
Sbjct: 355 KVIQTNKINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSK------------VG 402

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            +++LI +                SE+Q  +I  LRL RL+    ++   E   L   I 
Sbjct: 403 VVENLIKI-------------FNFSEIQAESIANLRLYRLSKTDVEEFIKEKQELETRIN 449

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVS 543
               +LSS S     + +    +K    TPR+T I +    LD+   D I  E+  V +S
Sbjct: 450 FLKTLLSSESEFNAELIKIFKDIKKTYATPRKTEIKDQALKLDVSLSDLIQAEETFVGIS 509

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR    ++ +           +++++D +  L    T   +L F++ G      +
Sbjct: 510 RDGYIKRFNQKIHDSNE-----MQTYLLKEDDALIFLSKTLTTGKLLIFTNQGNYISIPI 564

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++     +  G  L +  +L   E +  ++   +      +  +   TK G  ++ +L 
Sbjct: 565 FKIAEEKWKNLGIHLNDFATLLPNEFLIKVLYVDD---FSKDFSITLITKKGFGKKVQLP 621

Query: 664 DF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +F   + N+S          DE+L+        DILL     +  +F  +  + +    +
Sbjct: 622 EFEVSRENKSYPAIKFKKDGDELLNAFITNDRLDILLVNTKLEVYKFSENDFKTYGI-KA 680

Query: 722 VGVRGISLAKGDQVISMAIVLHADAD 747
            GV+ IS       IS AI    +  
Sbjct: 681 AGVK-ISDNATKFEISAAIAYSQNDT 705



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 24/226 (10%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +    ++      L     +        E   +  ++ G   RF           +S  +
Sbjct: 476 YATPRKTEIKDQALKLDVSLSD--LIQAEETFVGISRDGYIKRFNQKIH------DSNEM 527

Query: 725 RGISLAKGDQVISMA--------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           +   L + D +I ++        ++     +Y     +       + L     +  T L 
Sbjct: 528 QTYLLKEDDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFATLLP 587

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N+  ++    ++  ++       I  +++KGFGK+    +F +S R  K   A    K  
Sbjct: 588 NEFLIKVLYVDDFSKDFS-----ITLITKKGFGKKVQLPEFEVS-RENKSYPAIKFKKDG 641

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +   L+  F  ND   I+LV+ K  + +   N+ +       GV I
Sbjct: 642 D--ELLNAFITNDRLDILLVNTKLEVYKFSENDFKTYGIKAAGVKI 685


>gi|123967541|ref|YP_001008399.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
 gi|123197651|gb|ABM69292.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 813

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 259/751 (34%), Positives = 419/751 (55%), Gaps = 57/751 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRI+F M ++G+  +K +
Sbjct: 2   DKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL ++ Q++S +   ++G GNFGS+D DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV+F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG V ++ N DI    L  II+GPDFPTG  ++    I+  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRAIEELYQTGKGSITI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV + E+         +  I++ E+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP +  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKKYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    D+  +  GL+ A  ++ +V+ II  S N   AR +L+++     
Sbjct: 362 EETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEK----- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I NE+ +L  +  
Sbjct: 417 ---------------------FFLSEKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTV 542
               +L+ R  LL ++ +ELL +K + +  R+T+I++ L    ++E  +  + ED +   
Sbjct: 456 YFQKLLNERELLLKLLIEELLILKKKYNVIRKTKIIKNLNQNEELETLNNQILEDFINKK 515

Query: 543 SHLG-----YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS--THTSVLFFSSL 595
           + L      Y+KR+ LS Y+      K   GV    ++     FI +   +T ++  ++ 
Sbjct: 516 TKLYIDNRLYLKRMILSNYK------KSFEGVNKIIDNKNIQKFICNIEKNTKLIGITNT 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+    W   I         ++  +  ++      I+ F   +    N Y+      G
Sbjct: 570 GRVFNID-WESSINKDYKLDNKILGNIHPSE------IINFHSIKKETRN-YLCILNSDG 621

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIR 714
             ++      +  +       KL +  + +      +  ++++ T +G+  +F +S    
Sbjct: 622 RFKKVLFDKDMIKSNRSFTITKLKNNLKTVDSFISNESKNLIILTSIGRIFKFNLSNKFL 681

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
               + S G+    L   ++++S       +
Sbjct: 682 TATSKQSKGLIIAKLLPTEKIVSCCTFHDGE 712


>gi|310816011|ref|YP_003963975.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
 gi|308754746|gb|ADO42675.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
          Length = 487

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 236/493 (47%), Positives = 317/493 (64%), Gaps = 7/493 (1%)

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R W A DI + I LIDD S+T+  DGT  LS++Q RAILELRL RLT +G  ++ +EL
Sbjct: 1   MTRRWPAMDIAEYIKLIDDPSHTMNDDGTYNLSDLQARAILELRLQRLTQIGVKEVTDEL 60

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  +I++ LDILSSR R+L II+ EL  V+D+   PRRT I +   D++DED I RED
Sbjct: 61  QELAAKIRDYLDILSSRERILAIIEGELTEVRDQFAVPRRTEIADWAGDLDDEDLIERED 120

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTV+  GY+KR  L+ +R+Q+RGGKG S +  +DED VT LF+ +THT +LFF++ G 
Sbjct: 121 MVVTVTSGGYIKRTALAEFRSQKRGGKGLSSMQTKDEDVVTALFVANTHTQLLFFTTDGM 180

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VYK K WRLP+ +  ARGKA++NIL + QG  I  IMP    +S W+ L  VFAT  G+V
Sbjct: 181 VYKLKCWRLPLAARTARGKAIVNILPIPQGVTIAAIMPVDRPDSEWDELQAVFATSDGDV 240

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RRN LSDF  + R+GKIAMKL     ++ V+  ++++D+LL T  G+ +RF  + +RVF 
Sbjct: 241 RRNALSDFTNVMRNGKIAMKLPEGVSLVDVKIASEDDDVLLVTNSGRAIRFQTTDVRVFK 300

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR+S GVRGI L   D+V+SM I+ H +AD  ER  Y+K     RR I G  EE  +   
Sbjct: 301 GRDSTGVRGIRLQGDDRVVSMDIIKHFEADPAERAAYLK----MRRAIEGVLEEAET-DE 355

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D    G I++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+RA D +    
Sbjct: 356 DEVEAGAITQERYAEMSAFENLILTITRSGAGKLSSSHDYPVRGRGGMGVRAMDAAMRG- 414

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA FPV  +DQ++LV+  G  IRVPV  I   SR   GV +F+T  DE VVSV RI
Sbjct: 415 -GDLVAAFPVEMDDQVMLVTSTGQSIRVPVKGISFRSRGAGGVRVFNTGTDEHVVSVARI 473

Query: 898 RESEIVDEAESTE 910
            E+   ++   TE
Sbjct: 474 AEAGGDEDDAITE 486


>gi|332141548|ref|YP_004427286.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551570|gb|AEA98288.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 545

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/563 (34%), Positives = 298/563 (52%), Gaps = 87/563 (15%)

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +V RRT + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P  A++ L+ + W+  D+
Sbjct: 1   MVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDV 60

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   
Sbjct: 61  AQMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQ 120

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E L IL+S  RL+ +I++EL  ++DE    RRT I     D++ ED I +ED+V
Sbjct: 121 LLELIAELLHILNSPERLMEVIQEELEKIRDEFGDERRTEITAASHDIDIEDLIEQEDVV 180

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S  GYVK   L+ Y AQRRGG+G+S   M+DED +  L + +TH  +L FS+ G +Y
Sbjct: 181 VTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILCFSTRGRLY 240

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV++LP  S  ARG+ ++NIL L   ERIT I+P  E E      YV+ AT +G V++
Sbjct: 241 WLKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFEE---GKYVLMATANGTVKK 297

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------- 711
             LS + +   SG IA+ L+  DE++ V+    ++DI+L +  G+ VRF           
Sbjct: 298 TDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGE 357

Query: 712 ------------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                       A+R    R + GVRGI L  G +V+S+ +                   
Sbjct: 358 VKRDPETGEELLALRPMG-RTATGVRGIRLQDGQKVVSLIV------------------- 397

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                +  +LT +E GFGKRT   D+  
Sbjct: 398 ----------------------------------PKGDGPVLTATENGFGKRTPLEDYPA 423

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R+ +G+ +  VS+ N  G +V    V+D ++I+L+SD+GTL+R  V+E+ +  R T+G
Sbjct: 424 KSRATQGVVSIKVSERN--GKVVGAVQVDDTNEIMLISDQGTLVRTRVSEVSVVGRNTQG 481

Query: 880 VVIFSTAKDERVVSVERIRESEI 902
           V +  T + E VV ++RI E E 
Sbjct: 482 VRLIRTVEGEHVVGLQRIEEVEE 504


>gi|163814199|ref|ZP_02205591.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
 gi|158450648|gb|EDP27643.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
          Length = 758

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 238/755 (31%), Positives = 378/755 (50%), Gaps = 50/755 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + K
Sbjct: 3   EKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPHRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFG+VDG   AA RYTE 
Sbjct: 62  CARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYTEA 121

Query: 134 RLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           R+ K      + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIPT
Sbjct: 122 RISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPT 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
           HNLGEV+D  VA +++P+I+L+ L++++ GPDF TG +I      + N YATG G I +R
Sbjct: 182 HNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIKVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           G   +      R+ I VTE+PY +    A  L+ +AELVR + +  + D+ D  D+ G  
Sbjct: 242 GKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNGEC 301

Query: 310 VVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           + I++K+G S +    I+N LY+  +L+  F VN+  +N  KPE   L  ILK +  F+ 
Sbjct: 302 LCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGKPEVMGLKKILKVYTDFKY 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   + + LL +  +   + +GL  AV  +D ++ I+R S     A+  LM    +   
Sbjct: 362 GLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTSNVK 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            +      D           +  +E Q  AIL +RL +L GL  + ++ EL+     IK+
Sbjct: 422 FRFKGSEADAK--------FLCFTEKQADAILAMRLQKLIGLEINALKKELSDAEKLIKK 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              ++ SR  +   +  ++L +K +   PRRT+I      +  +  +V  D+ V +    
Sbjct: 474 YTRLMESRDAMKQQMIDDMLEIKAKYAIPRRTQIHNYGTVVVKKAEVVATDVAVLLDRFY 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K V  +VY             + RD               +  F+    VY  KV  +
Sbjct: 534 YIKVVDANVYEKN-------IEQINRD---YRFAVKCQNLDRIAVFADNNQVYTIKVADI 583

Query: 607 P----------------IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                            IG    +G  +    ++N  E I  +       +      ++F
Sbjct: 584 IKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDK----LLF 639

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +K G  +    S F    R+   A    + D+I+ +   ++ + I+  ++ G  +R  I
Sbjct: 640 VSKQGLAKVVDGSAFDTTRRA---ANASKAGDDIIYIGKFSEGDFIIAQSEKGYYIRVDI 696

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           S I     + + GV+ I+L   D + S+ +    D
Sbjct: 697 SEIPEKG-KGAAGVKLINLEGDDVLESVFVGSTRD 730



 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS++G  K      F  + R+    +A D         ++ +   ++ D II  S+K
Sbjct: 637 LLFVSKQGLAKVVDGSAFDTTRRAANASKAGD--------DIIYIGKFSEGDFIIAQSEK 688

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G  IRV ++EI    +   GV + +   D+ + SV
Sbjct: 689 GYYIRVDISEIPEKGKGAAGVKLINLEGDDVLESV 723



 Score = 41.4 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 495 SRLLGIIKQELLSVKD--ELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRV 551
            +LL + KQ L  V D    DT RR        D         E D ++  S  GY  RV
Sbjct: 635 DKLLFVSKQGLAKVVDGSAFDTTRRAANASKAGDDIIYIGKFSEGDFIIAQSEKGYYIRV 694

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +S    + +G  G   + +  +D +  +F+ ST  +     +          R+  G  
Sbjct: 695 DISEIPEKGKGAAGVKLINLEGDDVLESVFVGSTRDTFKVGDNE-----IIFTRVKPGKR 749

Query: 612 QARGKAL 618
             +G  L
Sbjct: 750 GGKGSKL 756


>gi|78778390|ref|YP_396502.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
 gi|78711889|gb|ABB49066.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
          Length = 813

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 255/754 (33%), Positives = 419/754 (55%), Gaps = 57/754 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  +K +
Sbjct: 2   DKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S +   ++G GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +H   L+++  +TV+F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+I+N ++    L  II+GPDFPTG  ++    I+  YATG+GSI I
Sbjct: 182 PPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSITI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV + E          R  +++TE+P+Q++KA  +EK+AELV   +I  I+D+RDESDR
Sbjct: 242 RGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++A+++++ LY+ T+LQ+ F    +AL   KP +  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    ++  +L GL+ A  N+ +++ II  S N   A+ +L+       
Sbjct: 362 EETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLID------ 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 YLS  Q  ++L++ L +LT L ++ I  ++  L  +  
Sbjct: 416 --------------------IFYLSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKD 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTV 542
              ++L+ R  LL ++  ELL +K + +  R+T++   ++   ++E  +  + ED +   
Sbjct: 456 YFQNLLNERKLLLELLVDELLILKKKYNVKRKTKLLKNIDQNEELETINNQILEDFINKK 515

Query: 543 SHLG-----YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS--THTSVLFFSSL 595
           + L      Y++++ L+ Y+      K    V    ++     FI +   +  ++  +  
Sbjct: 516 TKLFIDNRLYLRKMILNNYK------KSFEDVNKIIDNKNIQKFICNIDKNVKIIGITYT 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+    W   I +     K +I  +  N+      I+ F   +    N Y+      G
Sbjct: 570 GKVFHIN-WESNINNDYKLDKKIIGNIDQNK------IINFHSIKKGIKN-YLCILNSDG 621

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIR 714
             ++    + +  +       KL +  + +     ++E ++++ T +G+  +F +S    
Sbjct: 622 RFKKVLFDEDMIKSNRCFSITKLKNNIKTIDSFIFSEEKNLIILTSIGRMFKFNLSNKFL 681

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               + S G+    L   ++++S     + +  Y
Sbjct: 682 TPTTKQSQGLMLTKLLPTEKIVSCCSYQNGENIY 715


>gi|54020319|ref|YP_115549.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987492|gb|AAV27693.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
          Length = 846

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/809 (28%), Positives = 401/809 (49%), Gaps = 44/809 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  +   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M Q+G++ +K Y K
Sbjct: 6   DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+++IYDAL R+AQ+W +   L+E  GN GS+D DPPAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  LL+ + K+ V F PN+D S +EP +L A +PN+L+NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +I NP I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I I   
Sbjct: 186 NLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIKISSD 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I      +  I +T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  ++IE
Sbjct: 246 YKI-FEKNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  + D+I+N L + T LQ  +S N VA+    P+  ++  ++  ++    ++ +   
Sbjct: 305 LEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEF 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L K + R  ++ G        DEV+++IR S N +               + DLI  
Sbjct: 365 NFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSK------------VGVVSDLIKF 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+ Q  AI  +RL RL+ + +     E  +L   I     ++ +
Sbjct: 413 -------------FNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIEN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
           +      +   L   K     PR+T+I++  + ++         E     ++  G  K++
Sbjct: 460 KDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKL 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +                 + + DF     I++     +F ++ G +    V ++P  + 
Sbjct: 520 DIKNSLP-----DEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNL 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +     L   L +   ++I ++      ESS    +++F +K    +R  L   ++I + 
Sbjct: 575 KNSPNNLKITLGIPNNQQILSVFFADSFESSQ---FLIFISKFSFAKRMNLDQLMKIKQK 631

Query: 672 GKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               + +    DE++SV    +  +I+L T   + ++  IS I ++  RNS G++     
Sbjct: 632 KLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYT-RNSTGIKIFRHR 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K + + +   +  +++                 L  G+ + +T     + ++ ++S +  
Sbjct: 691 KNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGN-KILTPKNFKTKLDFSLSPKSI 749

Query: 791 QELKLKEQFILTVSEKGFG-KRTSSYDFR 818
                     L + E G G K  S  DFR
Sbjct: 750 IIYNEN----LQIFEFGEGLKIFSLNDFR 774



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVY--KEKVWRLPIGSPQARGKALINILSLNQ----GE 628
           D V  +   S ++ V   S L   +   +            R   +   + L +     +
Sbjct: 389 DEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEK 448

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I       E++  ++   +   T      +       +            ++DE++   
Sbjct: 449 NIARFKKLIENKDEFDKNLINMLTD----FKKHHGKPRKTKIIDSDIKIKINKDELV--- 501

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
               E      TK G   +  I          +       L  GD  I   I+       
Sbjct: 502 --KDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ------LPNGDFFIFQGIINQKQKAV 553

Query: 748 --YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              ++    +  +     L   ++     +         I      +     QF++ +S+
Sbjct: 554 FLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISK 613

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             F KR +        +  K        + +E   L++VF       I+L++ +   +++
Sbjct: 614 FSFAKRMNLDQLMKIKQK-KLQNIFRFKEGDE---LISVFLEEKLKNIVLITTQNRALKM 669

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 670 SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 801

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/743 (30%), Positives = 362/743 (48%), Gaps = 77/743 (10%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++V+ GRAIP L DG KPV RRIL+ M  MG++ + ++VK AR+ GEV+GK+HPHG+ ++
Sbjct: 81  MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDA+ RMAQ ++LR  +++GQGNFGS+DGD  AA RYTE  L   +  LL ++ + TVDF
Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R NYDG+ +EPV L AR P +L+NG  GIAVGMAT IP HNL E+   C  ++  PD+  
Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260

Query: 214 DALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D +++ I GPDFP G  I+   G I+ AY +GRGSI +R    +EK +    +I V ++P
Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320

Query: 273 YQVNKAAMLEKIA--------------------ELVREKRIVDIADLRDESDR-QGYRVV 311
             V+ A +L +I                     +  +   +  +  +RDES +    R+V
Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380

Query: 312 IELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           IE + R      ++  L   TSL+S  SVN+  L+   K     L  IL+ +V +R   V
Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAPCMPLTRILRQWVRYRVTTV 440

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L+KA  R H+L G    + ++D V+R+IR S +P+                  
Sbjct: 441 RRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKA----------------- 483

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q   ILE+RL +L  L   ++  EL            
Sbjct: 484 ------------DLMTHFDLSEIQAEDILEIRLRQLARLAGIELERELADKQETAAYLSA 531

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-----REDMVVTVSH 544
           +L   SRL  +I +E+ +   +    RRT +             +      E + V VS 
Sbjct: 532 LLQDESRLRALIAEEIQADAKKFGDDRRTLLEADTAITNKSIQTIAAAITDEPVTVIVSQ 591

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R +   G   + +  ++ D +   F V +  +++     G  Y   V 
Sbjct: 592 KGWL--------RTRSGHGLDTATLGFKEGDALLQAFEVRSVDTLVLLDHSGRAYSIAVA 643

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P G  +  G  + + +    G  + ++     D     +L++V  T  G      L +
Sbjct: 644 QIPGG--RGDGIPVSSQVDFQPGGVLASVACGAGD-----SLWLVAGTG-GYGFLTTLEN 695

Query: 665 FIQINRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               NR+GK  + LD ++  L  +     + + L  +  G+ + FP+  ++        G
Sbjct: 696 MTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSSDGRGLLFPLVDVKNLP--KGKG 753

Query: 724 VRGISLAKGDQVISMAIVLHADA 746
           V+ I+L     + S+++ L    
Sbjct: 754 VKLIALGASATLQSLSVYLDDQP 776



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 82/245 (33%), Gaps = 28/245 (11%)

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A K G+ RR  L     I       +     DE ++V    +     L T+ G  +    
Sbjct: 551 AKKFGDDRRTLLEADTAITNKSIQTIAAAITDEPVTVIVSQKG---WLRTRSGHGLDT-- 605

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                     ++G       +GD ++    V   D           +  A  ++  G  +
Sbjct: 606 ---------ATLG-----FKEGDALLQAFEVRSVDTLVLLDHSGRAYSIAVAQIPGGRGD 651

Query: 771 EI-TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            I  S + D    G ++   C      +   L     G+G  T+  +    NR+GK    
Sbjct: 652 GIPVSSQVDFQPGGVLASVAC---GAGDSLWLVAGTGGYGFLTTLENMTGRNRAGKAFLT 708

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            D  +      L  +   +   + + +S  G  +  P+ +++   +  KGV + +     
Sbjct: 709 LDPKER----PLPLIRVTDLQAEALCLSSDGRGLLFPLVDVKNLPKG-KGVKLIALGASA 763

Query: 890 RVVSV 894
            + S+
Sbjct: 764 TLQSL 768


>gi|72080375|ref|YP_287433.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
 gi|71913499|gb|AAZ53410.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 846

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/809 (28%), Positives = 400/809 (49%), Gaps = 44/809 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  +   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M Q+G++ +K Y K
Sbjct: 6   DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ +IYDAL R+AQ+W +   L+E  GN GS+D DPPAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  LL+ + K+ V F PN+D S +EP +L A +PN+L+NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +I NP I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I I   
Sbjct: 186 NLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIKISSD 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I      +  I +T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  ++IE
Sbjct: 246 YKI-FEKNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  + D+I+N L + T LQ  +S N VA+    P+  ++  ++  ++    ++ +   
Sbjct: 305 LEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEF 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L K + R  ++ G        DEV+++IR S N +               + DLI  
Sbjct: 365 NFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSK------------VGVVSDLIKF 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+ Q  AI  +RL RL+ + +     E  +L   I     ++ +
Sbjct: 413 -------------FNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIEN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
           +      +   L   K     PR+T+I++  + ++         E     ++  G  K++
Sbjct: 460 KDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKL 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +                 + + DF     I++     +F ++ G +    V ++P  + 
Sbjct: 520 DIKNSLP-----DEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNL 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +     L   L +   ++I ++      ESS    +++F +K    +R  L   ++I + 
Sbjct: 575 KNSPNNLKITLGIPNNQQILSVFFADSFESSQ---FLIFISKFSFAKRMNLDQLMKIKQK 631

Query: 672 GKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               + +    DE++SV    +  +I+L T   + ++  IS I ++  RNS G++     
Sbjct: 632 KLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYT-RNSTGIKIFRHR 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K + + +   +  +++                 L  G+ + +T     + ++ ++S +  
Sbjct: 691 KNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGN-KILTPKNFKTKLDFSLSPKSI 749

Query: 791 QELKLKEQFILTVSEKGFG-KRTSSYDFR 818
                     L + E G G K  S  DFR
Sbjct: 750 IIYNEN----LQIFEFGEGLKIFSLNDFR 774



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVY--KEKVWRLPIGSPQARGKALINILSLNQ----GE 628
           D V  +   S ++ V   S L   +   +            R   +   + L +     +
Sbjct: 389 DEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEK 448

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I       E++  ++   +   T      +       +            ++DE++   
Sbjct: 449 NIARFKKLIENKDEFDKNLINMLTD----FKKHHGKPRKTKIIDSDIKIKINKDELV--- 501

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
               E      TK G   +  I          +       L  GD  I   I+       
Sbjct: 502 --KDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ------LPNGDFFIFQGIINQKQKAV 553

Query: 748 --YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              ++    +  +     L   ++     +         I      +     QF++ +S+
Sbjct: 554 FLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISK 613

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             F KR +        +  K        + +E   L++VF       I+L++ +   +++
Sbjct: 614 FSFAKRMNLDQLMKIKQK-KLQNIFRFKEGDE---LISVFLEEKLKNIVLITTQNRALKM 669

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 670 SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 745

 Score =  442 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 226/725 (31%), Positives = 369/725 (50%), Gaps = 62/725 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
                SI    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   K+ K 
Sbjct: 5   NFEQQSIAQFSERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAKFKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GK+HPHG++A Y+++  MAQ +S R   I+GQGN+G+ D     AA RYTE 
Sbjct: 65  ARTVGDVLGKFHPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMRYTES 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + A  LL ++ + TV++  N+DGS QEP  L A+ PN+L+NG  GIAVGMAT++P H
Sbjct: 125 KLSRYADLLLLEINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATDVPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRG 252
           NL EVV  C+ ++DNP IDLD +M+ I+ PD+PT A I+  +  ++  Y TG GS+ +R 
Sbjct: 185 NLIEVVSACIVLLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSVKMRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--V 310
           V   E     +  IV+  +P+QV+ A ++ +I   +R K++  + D+RDESD +     V
Sbjct: 245 VYQKE-----KGNIVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENPTRIV 299

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +I        D ++  L+  T L+  + VNM  +    KP    LI +LK ++++R +VV
Sbjct: 300 IILHSNRFDVDALMLHLFATTELEKNYRVNMNVIGLDGKPRVLPLIPMLKEWLSYRMQVV 359

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R     +K   R H+L GL IA+ N++EV+ +IR    P+                  
Sbjct: 360 TNRLTCRFDKIIVRLHILKGLLIALLNINEVIAVIREYDKPK------------------ 401

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      +       L+ +Q  AILEL+L  L  L    IR E   L +E K+   
Sbjct: 402 -----------LVLINHFKLNTIQAEAILELKLRHLAKLEEVRIRTEQQELVLERKQLEL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLG 546
           +LSS SRL  +IK+EL  +  +    RR+ I   V       +++ ++ ED+ V +S+ G
Sbjct: 451 LLSSNSRLKSLIKKELKIIIKDFGDERRSNIKSNVNVAQAFSEDNLVLAEDVTVVLSNKG 510

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+RV        +      + +  +  D         ++  V+F  S G  Y      L
Sbjct: 511 WVRRV--------KGHDIDPTTLNYKAGDSYLTSVKGKSNKMVIFIDSTGRSYSLLAHSL 562

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                + +G+ L   LS   G +   I+          +  ++ ++  G        D +
Sbjct: 563 SNS--RGQGEPLTGKLSPPLGAQFIDIIM------GKTSQNILLSSDVGYGFIATFDDLL 614

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              ++GK+ + L    +++ V      ++  + L T  G+ + F IS + + +     G 
Sbjct: 615 SSRQTGKVFLSLSKGAQVMRVINVDDVDNQLVALATNRGRLLIFSISELPMLS--KGKGN 672

Query: 725 RGISL 729
           + I +
Sbjct: 673 KLIQI 677


>gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
 gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
          Length = 742

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 397/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I +I             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKITG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       Q++ +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549]
          Length = 742

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 397/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I +I             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKKDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKITG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       Q++ +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida U112]
 gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112]
 gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 742

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 397/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 TKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I +I             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKITG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       Q++ +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|126695342|ref|YP_001090228.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542385|gb|ABO16627.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 813

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 254/743 (34%), Positives = 419/743 (56%), Gaps = 57/743 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  +K +
Sbjct: 2   DKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S +   ++G GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH    +++G +TV F  N+DGS  EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLASIAHKGFLEEIGSETVSFSNNFDGSQTEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD  VA++ N DI    L +II+GPDFPTG  ++    I+  Y TG+GS+ I
Sbjct: 182 PPHNLGEIVDSLVALVKNNDISNKKLSKIIQGPDFPTGGELIHSAAIEELYETGKGSLTI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV ++E+         +  +++TE+PYQ++KA  +EK+AELV   +I  I+D+RDESDR
Sbjct: 242 RGVINMEEVNLGKGKHKKNALIITELPYQISKAGWIEKLAELVNSGKIHGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP + +L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLSLKKYLNFFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    ++  +L GL+ A  N+ +VV II  S N   A+ +L++      
Sbjct: 362 EETIRKRTFYFLKNTLEKLEILEGLSKATKNIKKVVAIIEESENSVEAKSKLIKN----- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I NE+ +L  +  
Sbjct: 417 ---------------------FFLSEKQASSVLDMPLRKLTNLEKNQIDNEIINLEEKKS 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMV--- 539
               +L+ R  LL ++ +ELL +K + +  R+T++++ +    ++E+ +  + E+ +   
Sbjct: 456 YFQKLLNERELLLELLIEELLILKKKYNVKRKTKVIKNINQNKELENLNNQILEEFINKK 515

Query: 540 --VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS--THTSVLFFSSL 595
             + + +  Y+K++ L  Y+      K    V    ++     FI +   +  ++  ++ 
Sbjct: 516 TKLCIDNRLYLKKMILGNYK------KSFEVVNKFIDNKNIQKFICNIEKNIKLIGITNT 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+    W   + +       ++  +  ++      I+ F   +    N Y+      G
Sbjct: 570 GKVFNID-WESNVNNDYKLDNKILGNIHPSE------IINFHSIKKEIKN-YLCILNSDG 621

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++    + +  +       KL +  + +      +  D+++ T +G+  RF +S   +
Sbjct: 622 RFKKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNKNKDLIILTSIGRIFRFNLSNKIL 681

Query: 716 -FAGRNSVGVRGISLAKGDQVIS 737
               + S G+    L   + ++S
Sbjct: 682 TPTSKQSQGLILAKLLPSETIVS 704


>gi|71893388|ref|YP_278834.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
 gi|71851515|gb|AAZ44123.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
          Length = 846

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 227/809 (28%), Positives = 402/809 (49%), Gaps = 44/809 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  +   +   ++ Y+  VI  RAIPD++DGLKPV RRIL+ M Q+G++ +K Y K
Sbjct: 6   DSVINSQLEKILAEKFIRYSKYVIQQRAIPDVKDGLKPVQRRILYSMWQLGLKNSKNYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+++IYDAL R+AQ+W +   L+E  GN GS+D DPPAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  LL+ + K+ V F PN+D S +EP +L A +PN+L+NG  GIA G AT IP H
Sbjct: 126 RLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +I NP I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I I   
Sbjct: 186 NLGEVIDAAILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIKISSD 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I      +  I +T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  ++IE
Sbjct: 246 YKI-FEKNGQNVIEITSIPFGISKSSLIEEIDDIRFDVKIYGIKNVIDQSDQNGVSILIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  + D+I+N L + T LQ  +S N VA+    P+  ++  ++  ++    ++ +   
Sbjct: 305 LEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIKLAEF 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L K + R  ++ G        DEV+++IR S N +               + DLI  
Sbjct: 365 NFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSK------------VGVVNDLIKF 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+ Q  AI  +RL RL+ + +     E  +L   I +   ++ +
Sbjct: 413 -------------FNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNITKFKKLIEN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYVKRV 551
           +      +   L   K     PR+TRI++  + ++         E     ++  G  K++
Sbjct: 460 KDEFDKNLINMLTDFKKHHGKPRKTRIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKL 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +                 + + DF     I++     +F ++ G +    V ++P  + 
Sbjct: 520 DIKNSLP-----DEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNL 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +     L   L +   ++I ++      ESS    +++F +K    +R  L   ++I + 
Sbjct: 575 KNSPNNLKITLGIPNNQQILSVFFADSFESSQ---FLIFISKFSFAKRMNLDQLMKIKQK 631

Query: 672 GKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               + +    DE++SV    +  +I+L T   + ++  IS I ++  RNS G++     
Sbjct: 632 KLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEIPIYT-RNSTGIKIFRHR 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K + + +   +  +++                 L  G+ + +T     + ++ ++S +  
Sbjct: 691 KNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGN-KILTPKNFKTKLDFSLSPKSI 749

Query: 791 QELKLKEQFILTVSEKGFG-KRTSSYDFR 818
                     L + E G G K  S  DFR
Sbjct: 750 IIYNEN----LQIFEFGEGLKIFSLNDFR 774



 Score = 54.9 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 108/336 (32%), Gaps = 28/336 (8%)

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVY--KEKVWRLPIGSPQARGKALINILSLNQ----GE 628
           D V  +   S ++ V   + L   +   +            R   +   + L +     +
Sbjct: 389 DEVIKVIRASDNSKVGVVNDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEK 448

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            IT      E++  ++   +   T      +       +            ++DE++   
Sbjct: 449 NITKFKKLIENKDEFDKNLINMLTD----FKKHHGKPRKTRIIDSDIKIKINKDELV--- 501

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
               E      TK G   +  I          +       L  GD  I   I+       
Sbjct: 502 --KDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ------LPNGDFFIFQGIINQKQKAV 553

Query: 748 --YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              ++    +  +     L   ++     +         I      +     QF++ +S+
Sbjct: 554 FLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISK 613

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             F KR +        +  K        + +E   L++VF       I+L++ +   +++
Sbjct: 614 FSFAKRMNLDQLMKIKQK-KLQNIFRFKEGDE---LISVFLEEKLKNIVLITTQNRALKM 669

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 670 SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|260656380|pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
 gi|260656381|pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
          Length = 470

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 223/493 (45%), Positives = 310/493 (62%), Gaps = 31/493 (6%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY
Sbjct: 4   SVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIY 63

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D+L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +L ++ ++TVDF 
Sbjct: 64  DSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFI 123

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PNYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HNL E+ D     ++N D D +
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEE 183

Query: 215 A----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                +M  ++GPDFPT  +I+G  G  +AY TGRGSI +RGV  +E+ S  R  +V+TE
Sbjct: 184 ETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITE 243

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYR 329
           +PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R+VIE+KR A A V++N LY+
Sbjct: 244 LPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYK 303

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           +T LQ+ F  NM+A+    P    L  +++ +V  + +V+VRRT Y L KA +RAH+L G
Sbjct: 304 HTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRG 363

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L  A+  LDEV+ +IR S   + AR  L++                           + +
Sbjct: 364 LVKALDALDEVIALIRASETVDIARAGLIE--------------------------LLDI 397

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
            E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL  + 
Sbjct: 398 DEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIV 457

Query: 510 DELDTPRRTRIVE 522
           D     RRTRI+ 
Sbjct: 458 DRHGDDRRTRIIA 470


>gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 441

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 26/466 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                            LSE Q++AIL++RL RLTGL RD I++E 
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEY 441


>gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1]
          Length = 742

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/773 (30%), Positives = 398/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
             ++   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 TKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILIDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I +I             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       Q++ +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 745

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 232/729 (31%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   ++ K 
Sbjct: 5   SLEQQSVAEFSERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTARFKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   I+GQGN+G+ D     AA RYTE 
Sbjct: 65  ARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPDDPKSFAAMRYTES 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + +  LL ++ + TV++  N+DGS QEP  L A+ PN+L+NG  GIAVGM TN+P H
Sbjct: 125 KLSRYSDLLLSEINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTNVPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           NL EVV  C+A++D P +DLD +M+IIR PD+PT A I+     ++  Y TG GS+ +R 
Sbjct: 185 NLTEVVSACIALLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSVKMRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--V 310
           +   E     +  IV+  +P+Q + A ++ +IA  +R K++  + D+RDESD +     V
Sbjct: 245 IYQKE-----KGNIVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENPTRIV 299

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           +I        DV++  L+  T L+  + VNM  +    KP   +LI +LK ++++R +VV
Sbjct: 300 IIPRSNRVDVDVLMLHLFATTELEKSYRVNMNVIGLNGKPGVLSLIPMLKEWLSYRMKVV 359

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + R  Y L+K   R H+L GL IA  N+DEV+ IIR    P+                  
Sbjct: 360 INRLTYRLDKILVRLHILKGLLIAFLNIDEVIAIIREHDKPK------------------ 401

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            + LID             LS++Q  AILEL+L  L  L    I+ E   L +E ++   
Sbjct: 402 -LVLIDH----------FKLSDIQVEAILELKLRYLAKLEEIKIQAEQQDLALEKEKLKL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLG 546
           +LSS  RL  +IK+EL ++  +    RR+ I   V       ++D    E++ V +S  G
Sbjct: 451 LLSSDLRLKILIKKELKAIIKDFGDERRSNIKRNVNTAQAFSEDDLAPAENITVVLSEKG 510

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R+ +      + +  +  D         ++  V+F  S G  Y      L
Sbjct: 511 WV--------RSAKGYSIDPNTLNYKAGDSYLTSVKGKSNKPVIFIDSTGRSYSLLANSL 562

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S + +G+ L   LS     R   ++          +  ++ A+  G      + D +
Sbjct: 563 --SSARGQGEPLTGKLSPPSEARFVDVIM------GKASQNILLASNIGYGFIATIGDLL 614

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              ++GK    L    +++ +      +   I L T  G+ + FPIS + + +     G 
Sbjct: 615 SSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPILS--KGKGS 672

Query: 725 RGISLAKGD 733
           + I ++  D
Sbjct: 673 KLIQISTKD 681



 Score = 45.3 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 25/238 (10%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
              ++         I R+   A      D          EN  ++ ++ G        +I
Sbjct: 467 KAIIKDFGDERRSNIKRNVNTAQAFSEDD------LAPAENITVVLSEKGWVRSAKGYSI 520

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                    G   ++  KG     +  +      Y      +     Q   ++G     +
Sbjct: 521 DPNTLNYKAGDSYLTSVKGKSNKPVIFIDSTGRSYSLLANSLSSARGQGEPLTGKLSPPS 580

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             +    + G  S+            IL  S  G+G   +  D   S ++GK   +    
Sbjct: 581 EARFVDVIMGKASQN-----------ILLASNIGYGFIATIGDLLSSRQAGKAFFSL--- 626

Query: 834 KINEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++   ++ +  V+D D   I LV+++G L+  P++E+ I S+  KG  +   +  +
Sbjct: 627 --SKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPILSKG-KGSKLIQISTKD 681


>gi|33860565|ref|NP_892126.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633507|emb|CAE18464.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 813

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 269/846 (31%), Positives = 453/846 (53%), Gaps = 63/846 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + 
Sbjct: 3   KEKFTSISLQEEMQRSYLEYAMSVIIGRALPDARDGLKPVQRRILFAMHELGLTPDRPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+Y+AL R+ QD+S +   ++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L ++G +TV +  N+DGS QEP +L A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHECFLQEIGSETVSYSNNFDGSQQEPDILPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VDG +A+I++ +I    L +II GPDFPTG  ++  + +   Y  GRGS+ +R
Sbjct: 183 PHNLGEIVDGLIALINDKEISDLRLSKIILGPDFPTGGELICNSAMNEVYLQGRGSVTVR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV   E+ +       +  ++++E+PYQ++KA  +EK+AELV   +I  I+D+RDESDR 
Sbjct: 243 GVIKNEEINLGKGRHKKNALIISELPYQISKAGWIEKLAELVNLGKIDGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELK+ ++++++++ L++ T+LQS F    +AL   KP + TL   L  F+ FRE
Sbjct: 303 GMRVVIELKKDSNSEIVVSNLFKKTALQSNFGAIFLALVDGKPIQLTLRKYLNYFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + +RTKY L  A ++  +L G +IA  N+ +++ +I+ S N   A+  L+ +      
Sbjct: 363 ETIRKRTKYFLRIASEKFEILEGFSIATKNIKDIIEVIQNSENATEAKSILIVK------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L +LT L R  I  ++  L  + K 
Sbjct: 417 --------------------LSLSEKQADAVLSMPLKKLTTLERKQIEIDMKELLEKKKY 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMV---- 539
             ++L++R  LL  + +EL S+K + +  R+T+I   +    +++  +  + ED++    
Sbjct: 457 LNNLLNNRRLLLDTLIEELKSLKKKFNVKRKTKILKDINQEKEIDTINNQILEDLINKET 516

Query: 540 -VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FSSLG 596
            ++V +  Y K++  + Y+      K         ++     FI     S+     +S G
Sbjct: 517 KISVDNRFYFKKIIYNNYK------KILDHENKFIDNKNVQKFICRIDKSLKIIGITSSG 570

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            + +   W+  I S     K +  + +++  E    I+ F   +S   N Y+   +  G 
Sbjct: 571 KIIQID-WKSNITSEFKMDKKV--LGNIDPKE----IINFHYLDSKLKN-YLCILSSDGR 622

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV- 715
            ++    + +  +       KL +   I+      ++  +++ T +G+  +F +S   + 
Sbjct: 623 FKKVLFDEDMIKSNRIFSITKLKNSTSIIDSFILNKQQQLVILTSIGRLFKFDLSDKNLN 682

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            + + S+G+  ++L   +Q++S         D +      K     +  I        S 
Sbjct: 683 PSTKQSLGLLLVNLLPTEQIVSCC----KSKDKEILYLVSKKGKFFKLKIDDIYNSYNSK 738

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
               + +  + ++    +    Q+I   + K    R +    ++ N SGK +   D   +
Sbjct: 739 LGYVNEKMQLKDDHFITVLSSNQYIDIETNKNKSARLNLN--KLDNNSGKNMLKIDFLNL 796

Query: 836 NEIGAL 841
            +   L
Sbjct: 797 EKDEYL 802


>gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
 gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
          Length = 742

 Score =  437 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 230/773 (29%), Positives = 397/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++ NP+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 741

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 229/773 (29%), Positives = 396/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+G +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +      EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDSSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNA------ARYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
 gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
          Length = 650

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 212/632 (33%), Positives = 324/632 (51%), Gaps = 57/632 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRP----FFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D     AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG 
Sbjct: 117 DDPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGT 176

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A +I   + ++
Sbjct: 177 TGIAVGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQ 236

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  +  
Sbjct: 237 NLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDG 291

Query: 299 L--RDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
              RDESD +    ++   R      + ++  L+  T L+    VN+  +    +P+   
Sbjct: 292 EGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKP 351

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  +++FR + V RR KY L K   R H+L GL IA  NLD+V+ IIR    P+  
Sbjct: 352 LKQLLSEWLSFRSDTVTRRLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPKPV 411

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ R                            LS+ QT  IL+ +L +L  L    I
Sbjct: 412 ---LIAR--------------------------FGLSDAQTEYILDTKLRQLARLEEMAI 442

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDED 531
           R+E ++L  E  E   IL S  +L  +IK ELL+        RR  +V  +    +++ +
Sbjct: 443 RSEQDALTKERDEINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESE 502

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E M V +S  G++        RA +      SG+  R+ D +       +   V F
Sbjct: 503 LVASEPMTVVLSEKGWI--------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSF 554

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
             S G  Y   V  LP    +  G+ L    S
Sbjct: 555 LDSEGRAYSTLVHTLPAA--RGNGEPLTGRFS 584


>gi|257439263|ref|ZP_05615018.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
 gi|257198305|gb|EEU96589.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
          Length = 749

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/764 (28%), Positives = 353/764 (46%), Gaps = 54/764 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M  MG+    +  K 
Sbjct: 28  SVLEDPITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGART-KS 85

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYT
Sbjct: 86  ANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYT 144

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+     L  D+ K+TVDF PNYDG+  EP +L   +P +L N   GIAVGMA NI 
Sbjct: 145 EAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNIC 204

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
           + NL E+    VA++ +P  D+   M     PDF  G  IL     ++  Y  GRGSI +
Sbjct: 205 SFNLAELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKV 261

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   ++         + +T+IP      A+++KIAELV+  +I +I+D+RDE+D  G ++
Sbjct: 262 RARYNV---VPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            ++LKRG   + ++ +LY+ T L+  FS N   L   +P    +  IL+ + AFR E V 
Sbjct: 319 TLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQPRVMGVREILQEWTAFRMECVR 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L+    R H+L GLA  + ++D+ + IIR +         LM            
Sbjct: 379 RRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMI----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L  L          E+  L  +I +  DI
Sbjct: 428 ---------------GFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGY 547
           L+  +R+  II  EL  V  +   PRR+ I+  L + E            + V  +  GY
Sbjct: 473 LAKPARIRRIIINELNDVAKKYAQPRRSEILYDLPEEESGAEEEVIPDYPVTVFFTREGY 532

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++P    R             +++ D +        +   LFF+    VYK ++  L 
Sbjct: 533 LKKIPPQSLRT-------AGAHKLKEGDEIIHQVETRNNVEALFFTDKQQVYKVRLNELE 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G     G  L   L +++GE I  ++   +      + YV+F    G   +  L+ +  
Sbjct: 586 DGKVAQMGIYLPGRLGMDEGENILAMVITGDY-----SGYVLFFFAGGKCAKIPLASYAT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      ++ +  +    ++ ++ + T  G+ +    + I     R+S GV  +
Sbjct: 641 KQNRRKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDSQGVAVV 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +L K   + S+      +     R       +    + + D  E
Sbjct: 701 TLKKNQTIASVVPAETLELANPHRYRVRSLPATGALIRAEDEGE 744



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 80/235 (34%), Gaps = 22/235 (9%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + Q  RS  +   L   +     E        +  T+ G   + P  ++R          
Sbjct: 494 YAQPRRSEILY-DLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPPQSLRTAGAH----- 547

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
               L +GD++I     +    + +      K    + RL   +  ++  +         
Sbjct: 548 ---KLKEGDEIIHQ---VETRNNVEALFFTDKQQVYKVRLNELEDGKVAQMGIYLPGRLG 601

Query: 785 ISE-ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           + E E    + +   +   +L     G   +     +       K ++A    +      
Sbjct: 602 MDEGENILAMVITGDYSGYVLFFFAGGKCAKIPLASYATKQNRRKLLKAYSDKE-----P 656

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAKDERVVSV 894
           L  +  + ++ ++ + +  G ++ V   +I    +R ++GV + +  K++ + SV
Sbjct: 657 LAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDSQGVAVVTLKKNQTIASV 711


>gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644]
 gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644]
          Length = 906

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 276/847 (32%), Positives = 396/847 (46%), Gaps = 143/847 (16%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM- 61
           E ++   + + + +  VS+ +  ++ YL YA++VI  RA+PD+RDGLKPV RRIL+ M  
Sbjct: 16  ERLLRRAQSQGEVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWA 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            +      ++VK A + GEVM  YHPHG+ +IYDAL RMAQD+SLR  LIEG GNFGS+D
Sbjct: 76  DLKAGATGRFVKSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSID 135

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPAA RYTE RL  AA  LL +L + TV+FR NY  + +EPVVL AR+PN+LVNG  G
Sbjct: 136 GDPPAAMRYTEARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASG 195

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNA 240
           IAVGMAT IP HNL EV +  +A++DNP+I +D L   + GPDFPTG V+L     ++  
Sbjct: 196 IAVGMATTIPPHNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGI 255

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YA G G+I +RG    E     +E +V+T IPY V K  ++ KI EL+ + ++  + +++
Sbjct: 256 YANGHGTIKLRGTW--EPHPERKEAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVNVK 313

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL------------NGYK 348
           D SD +  R+V++L+ GA+A+  +  LY+ TSLQ    VNM  L                
Sbjct: 314 DLSD-EAIRIVLDLRPGANAEAAMAYLYKNTSLQINHHVNMTCLLPALPNQRVGDNADAT 372

Query: 349 PERFTLIGILKAFVAFREEVVV-------------------------------------- 370
             R TL   L+ F     E                                         
Sbjct: 373 AVRATLADELEPFDLDESEWDADAAASDPASTTLAAGLDQGEERSASVPERLDLKTMLSH 432

Query: 371 ---RRTKYLLNKAR-------DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
               R + ++ K R        R H+L G  I    LDE +R+IR S     A  +L  R
Sbjct: 433 FLDFRMEVVIRKLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASNGKADAAPKLATR 492

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q  AILE +L RL  L  D+I  EL   
Sbjct: 493 --------------------------FGLSALQADAILETKLYRLGKLEIDEILRELAER 526

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDM 538
               +E   +L   +   G+I+ +L  +     TPRRTRI     ++E  +ED IV ED 
Sbjct: 527 RARAEELRRLLGDEAARKGLIRDDLKRIAKTYGTPRRTRIEGPAPEVEFREEDYIVDEDA 586

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V V+  G++KR          R       + +RD D V  LF      ++   +S G  
Sbjct: 587 WVIVTRDGWIKRQ---------RSFTDIESIRVRDGDRVGWLFRARARRTLTVLTSRGMA 637

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF---------------------- 636
           Y  +V  L +      G+ +  + SL   ERI  ++                        
Sbjct: 638 YTTRVHDLVMT--TGHGEPISKLFSLEDNERIVGVVCHDPRCLPVHADPADHAAPKRQGV 695

Query: 637 -----------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSR--- 681
                        D S     YVV  T  G   R  L+    +  R G+  M+ D     
Sbjct: 696 LLATAASGEESSSDNSQPQPPYVVVVTAGGKALRFSLAALAAVSTRKGRAVMRPDPDRPN 755

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG-DQVISMAI 740
           DE+++       + ++L T   + +RF ++ I V +G  + GV  I L    D+V+ + +
Sbjct: 756 DEVVAALVSNGHDQVMLATTSARVIRFAVTEIPVVSGP-AKGVLAIRLQDETDRVLGVLL 814

Query: 741 VLHADAD 747
              A   
Sbjct: 815 TDRAQDT 821



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 94/261 (36%), Gaps = 25/261 (9%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
           F E++   +    V  T+ G ++R       Q + +   ++++   D +  +        
Sbjct: 575 FREEDYIVDEDAWVIVTRDGWIKR-------QRSFTDIESIRVRDGDRVGWLFRARARRT 627

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           + + T  G      +  + +  G      +  SL   ++++   +V H            
Sbjct: 628 LTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSLEDNERIVG--VVCHDPRCLPVHADPA 685

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            H + +R+ +              +   +  E      + +  +++ V+  G   R S  
Sbjct: 686 DHAAPKRQGVLL------------ATAASGEESSSDNSQPQPPYVVVVTAGGKALRFSLA 733

Query: 816 DFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
               +S R G+ +             +VA    N +DQ++L +    +IR  V EI + S
Sbjct: 734 ALAAVSTRKGRAV--MRPDPDRPNDEVVAALVSNGHDQVMLATTSARVIRFAVTEIPVVS 791

Query: 875 RATKGVVIFST-AKDERVVSV 894
              KGV+      + +RV+ V
Sbjct: 792 GPAKGVLAIRLQDETDRVLGV 812


>gi|26554099|ref|NP_758033.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
 gi|26454107|dbj|BAC44437.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
          Length = 1481

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 236/730 (32%), Positives = 380/730 (52%), Gaps = 41/730 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++   I + S+ D M  S+  YA  +I  RA+PD+RDGLKPV RRIL  M ++ +  +K 
Sbjct: 3   KQNDKIWNRSLDDIMSESFGKYAKYIIQDRALPDVRDGLKPVQRRILHAMNELKIHHDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+Q+W   L L++ QGN GS+DGD PAA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQEWKNNLPLLDMQGNKGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TECRL K    +L D+ K+TV F  N+D S QEP VL +  PN+L+NG  GIA G ATNI
Sbjct: 123 TECRLSKFGQTILKDIDKNTVKFINNFDDSEQEPTVLPSLLPNILINGATGIAAGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P  N  EV+DG +  I  P+  L  L +II+GPDFPTG +I G+  I+  Y TG+G   I
Sbjct: 183 PPFNPSEVIDGTIYRILRPESSLAELAKIIKGPDFPTGGIIQGKEFIQEIYKTGKGKFFI 242

Query: 251 RGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R     E T   +  ++++V EIPY  NK+A+++ + E+     +    ++RD+SD+ G 
Sbjct: 243 RAKIEEEPTKSTKNVKRLIVKEIPYDTNKSAIVKSLDEIKYNNELPGFKEVRDDSDKNGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            +V+E       ++I   LY+ T LQ  ++ NMV +   KP +  L+ IL +F+     V
Sbjct: 303 SIVLEFDTEKDLEIIKTFLYKKTQLQISYNANMVLIKDRKPVQAGLLEILDSFIEHANNV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V++  +Y L K+  R  ++ GL  A++ +D +V +I+ S + E A+              
Sbjct: 363 VIKAAQYDLEKSLLRKEIIEGLIKAISEIDVLVNLIKSSVSKEEAK-------------- 408

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       +       ++E Q+ AI+ LRL  LT    + ++ E   L   IKE  
Sbjct: 409 ------------LKIQDYFKVNERQSEAIVNLRLYVLTSFDTEKLKKEYEELLEFIKEKE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM--VVTVSHLG 546
            I++S       I   L + K      RR+ I   + ++E E   + E+      V+   
Sbjct: 457 LIINSVPYRNKFIVSILENHKKSFGYKRRSLIENEVEELEIETVDIVEERNGTCIVTRDN 516

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K +               S   ++D D   D+F +ST   ++  ++ G +     +++
Sbjct: 517 YIKFIDDVSIE-----ELDLSKAKIKDADIPVDIFRLSTLDHLVCLTNRGKMITIPAYKI 571

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-F 665
            +   +  G  +  +++++  E+  TI+ F   + S  N  ++ ATK+  ++R  L D  
Sbjct: 572 KMTKLKDNGVHINELITIDSFEK--TILAFGVSKYSDINTEILVATKNSLIKRISLEDIN 629

Query: 666 IQINRSGKIAMKLDSR-DEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N      + L    D+++S     +E ++++  T+ G   R+ I  I    GR + G
Sbjct: 630 LSKNAKSSTYVSLKGGNDDVVSAYILKKEYSEVVSVTQNGYATRYKIDEI-PLVGRTAAG 688

Query: 724 VRGISLAKGD 733
           V+ +SL   D
Sbjct: 689 VKNMSLKDKD 698



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 91/241 (37%), Gaps = 12/241 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
               T+   ++     D + I        K+   D  + +   +  + ++  T  G+ + 
Sbjct: 509 TCIVTRDNYIK---FIDDVSIEELDLSKAKIKDADIPVDIFRLSTLDHLVCLTNRGKMIT 565

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQ----VISMAIVLHADADYDERICYMKHMSAQRR 763
            P   I+        GV    L   D     +++  +  ++D + +  +     +  +  
Sbjct: 566 IPAYKIK-MTKLKDNGVHINELITIDSFEKTILAFGVSKYSDINTEILVATKNSLIKRIS 624

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNR 822
           L   +  +        S++G   +     +  KE   +++V++ G+  R    +  +  R
Sbjct: 625 LEDINLSKNAKSSTYVSLKGGNDDVVSAYILKKEYSEVVSVTQNGYATRYKIDEIPLVGR 684

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +  G++   +   + +   V +      + +  +S++G   R+ +N+I + SR+  G  I
Sbjct: 685 TAAGVKNMSLKDKDLMAFTVPIP--KHENFLFFISNRG-AKRIHINDIVVTSRSKLGKRI 741

Query: 883 F 883
           F
Sbjct: 742 F 742



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIIL 855
              IL  ++    KR S  D  +S        +T VS       +V+ + +  +  +++ 
Sbjct: 608 NTEILVATKNSLIKRISLEDINLSK---NAKSSTYVSLKGGNDDVVSAYILKKEYSEVVS 664

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+  G   R  ++EI +  R   GV   S    + +     I + E
Sbjct: 665 VTQNGYATRYKIDEIPLVGRTAAGVKNMSLKDKDLMAFTVPIPKHE 710


>gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 741

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 229/773 (29%), Positives = 396/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 IKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 741

 Score =  435 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 229/773 (29%), Positives = 396/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 IKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
 gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
          Length = 746

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 219/730 (30%), Positives = 368/730 (50%), Gaps = 62/730 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I    + ++    YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +    ++ K
Sbjct: 3   KNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQFKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GK+HPHG+ ++YDAL R+AQD+S    L+ GQGNFG+VDGD  AA RYTE 
Sbjct: 63  SARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYTET 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L K + +LL D+ ++TV+F+  YDG   EP +L +++PN+L NG  GIAVGMAT+IP H
Sbjct: 123 KLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           N+ E+ +  + + DNP+  +  L++ I+GPDFPTG ++   +  I  AY TGRG   I+ 
Sbjct: 183 NVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEIKS 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E       QI VTEIPY VNK+ ++EK+A ++  K+   +  + DESD +   V+ 
Sbjct: 243 KYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEKIRIVLR 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
              R  + + ++N L+  + L++   +NM  LN   +P+   L  ILK+ +  R  ++  
Sbjct: 303 PKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIILNN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +  + L K + R  +L G  I   NL+++++IIR S +P   ++EL+++           
Sbjct: 363 KINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDP---KKELIKK----------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             + +Q  +ILE+RL  L  +   DI+ E  +L +E K    IL
Sbjct: 409 ---------------YKFTLIQVDSILEMRLRNLKKIEELDIKKEFKNLELEKKRLSKIL 453

Query: 492 SSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMEDE---DCIVREDMVVTVS 543
           +S++     I  E   V +E        PRR+ + + +   +DE      V E++ V++ 
Sbjct: 454 NSKTLQRKEINNEYTEVINEFGDNSTYGPRRSILEKFVKFTDDELESKLEVIENINVSLI 513

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +  ++K              KG      ++ D V+ +    T   +   S++G  Y    
Sbjct: 514 NEKFLK------------SKKGTYKRSEKNSDDVSLIINCKTSDQICLLSNIGKSYILNC 561

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L  GS   +G  + + L L   E+I  +  + E +       ++ ++++G     K  
Sbjct: 562 SNLKFGS--TKGFLISSYLKLKDEEKIVDLFVYKEKQE------IILSSQNGYGFFVKSE 613

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR---N 720
           D     +SGK    +   D+        +E D  +   L   +++ +    +        
Sbjct: 614 DLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNLKYKLIIFELKEVPYLQK 673

Query: 721 SVGVRGISLA 730
             GV      
Sbjct: 674 GSGVILFKTK 683


>gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 741

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 221/723 (30%), Positives = 378/723 (52%), Gaps = 61/723 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
             S     +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHSN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +      EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDSSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNA------ARYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQV 735
           D++
Sbjct: 678 DKL 680


>gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 739

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 216/694 (31%), Positives = 360/694 (51%), Gaps = 59/694 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQ++S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ EV
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++ NP   ++ ++EII  PD+P GA I+  +  I   Y +G GSI  + V   +
Sbjct: 192 INACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +++T +P+QV+ A+++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSAS 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R   + RR +
Sbjct: 308 TKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P                        
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIEIIRNFDDP------------------------ 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                ++       LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 404 -----SLELQSRFALSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKEKELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+EL  +  +    RR++IV+      +E++D +  E + V +S  G+V    
Sbjct: 459 VKFKNLMKKELKQILADFGDSRRSKIVQADKAQALEEKDLMPSERVTVILSKAGWV---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +       G+  + ED        +++  ++FF+ LG  Y   V + P  S +
Sbjct: 515 ----RCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKLIFFTKLGKAYSMYVDKFP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ + I  I      E +    + + A+  G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKEDEIINI------EFANVAEHFLIASTSGKGFVIPAEDLIANKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           K    +   D++       ++  +L  +  G+ +
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI 653


>gi|160892780|ref|ZP_02073570.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
 gi|156865821|gb|EDO59252.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
          Length = 759

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 231/757 (30%), Positives = 374/757 (49%), Gaps = 51/757 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + K
Sbjct: 3   EKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPHRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFGSVDG   AA RYTE 
Sbjct: 62  CARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYTEA 121

Query: 134 RLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           R+ K      + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIPT
Sbjct: 122 RISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPT 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HNLGEV+D  V  +++P++ L+ L+++++GPDF TG +I   +  +   Y TG G I +R
Sbjct: 182 HNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIKVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           G   I      R+ I VTEIP+ +    A  L+ +AEL R + +  + D+ D  D+ G  
Sbjct: 242 GKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKNGEC 301

Query: 310 VVIELKRGASADV---ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           + I++K+G + +    I+N LY+   L+  F VN+  +   KPE   L  IL  +  F+ 
Sbjct: 302 LCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGKPEVMGLRRILSIYTDFKY 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   +   LL    +   +  GL  AV  +D ++ I+R S     A+  LM    +   
Sbjct: 362 GLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDTSNIT 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            +      D           +  +E Q  AIL +RL +L GL  + ++ EL      IK+
Sbjct: 422 FRFKGSEADAK--------FLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKK 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L S+S +   +  ++L +K++   PR+T I +    +  +   V  ++ V +    
Sbjct: 474 YSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVETEVAVLLDRFY 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K V  ++Y   +            D+D+    F       V  F+    +Y  KV  +
Sbjct: 534 YIKVVDANLYDKNK---------AQIDKDY-RFSFKCKNTERVGVFADNNQMYMIKVADI 583

Query: 607 P-----------------IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
                             IG    +G  +    ++N  E I  +           +  ++
Sbjct: 584 IKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCL----EQIIDKNLL 639

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           F TKHG  +    +++  + +   IA      D I+ +     E+ I++ + LG   R  
Sbjct: 640 FVTKHGQAKLVPGNNYDVLRK--MIAASKQEED-IIFIHDAEMEDFIVVKSMLGYYARIQ 696

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           IS I    G+ +  +R +++   D++  +A+    D+
Sbjct: 697 ISEI-PVKGKGAGCIRLVNITDDDEIEEVAVGSTKDS 732



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 108/305 (35%), Gaps = 25/305 (8%)

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L   L    G  +  +    ED       Y        N+++  ++D ++I     I  K
Sbjct: 445 LAMRLQKLIGLEVNALKKELEDAEKLIKKYSKLLESKSNMKKQMIADMLEIKEKYAIPRK 504

Query: 678 LDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA---KG 732
               D  E++  +    E ++ +   L +     +    ++    +   +    +   K 
Sbjct: 505 TVIADCGEVVVKKAQAVETEVAVL--LDRFYYIKVVDANLYDKNKAQIDKDYRFSFKCKN 562

Query: 733 DQVIS-------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + +        M ++  AD    +             LI   +++   +    ++ GN 
Sbjct: 563 TERVGVFADNNQMYMIKVADIIKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNE 622

Query: 786 S-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +    C   ++ ++ +L V++ G  K     ++ +        +    SK  E   ++ +
Sbjct: 623 NILYMCCLEQIIDKNLLFVTKHGQAKLVPGNNYDV------LRKMIAASKQEE--DIIFI 674

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV--VSVERIRESEI 902
                 D I++ S  G   R+ ++EI +  +    + + +   D+ +  V+V   ++S  
Sbjct: 675 HDAEMEDFIVVKSMLGYYARIQISEIPVKGKGAGCIRLVNITDDDEIEEVAVGSTKDSFF 734

Query: 903 VDEAE 907
           VD  E
Sbjct: 735 VDNTE 739


>gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 741

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 229/773 (29%), Positives = 395/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  P+  ++ ++EI+  PD+P GA I+  +  I + Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR +
Sbjct: 308 IKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSG---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++I+  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQVLEEKDLMPSEKVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   + +  ++FFS LG  Y   + +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNGNIKLVFFSKLGKAYSMYIDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++             Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +    ++  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A]
          Length = 739

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 220/719 (30%), Positives = 355/719 (49%), Gaps = 57/719 (7%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+    + +YL YA+ VIL RA+P L DGLKPV RR+++ M ++G+    KY K AR  G
Sbjct: 8   SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQ++S R  LI+GQGN+GS D     AA RYTE +L   
Sbjct: 68  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL +L  +TVD+  N+DG+ QEP  L AR PN+L+NGG GIAVGM+T+IP HN+GE+
Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V  C A++ NP +  +AL++I+  PDFPTG V I  R  I + Y TG GS+ +R   HIE
Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                ++ IV+ E+PYQV+ + + E+I + ++EK+++ +  +RDESD +    ++ L R 
Sbjct: 248 -----KDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302

Query: 318 ASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              D   ++  L+  T L+    + +  +    KP+   LI IL+ ++ +RE+ V+RR  
Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L+   +R  +L GL IA   LD V++IIR   + +TA                     
Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTA--------------------- 401

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + L+  Q+ AIL +RL +L  L  + I  E  +L  E K   +++ +R
Sbjct: 402 --------LMQALPLTAAQSEAILNIRLRQLAKLEENAIVQEEKTLIDEQKSLQNLIDNR 453

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              L  I  EL +       PRRT  +  +    +        E + + +S + +V    
Sbjct: 454 DARLQFIADELAADAQNYADPRRTTFIKPDAKTALPARAWQPSEAVTLVLSKMAWV---- 509

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +        +  +  D         +  + +   + G  Y   +  +   S +
Sbjct: 510 ----RLAKTHQVDGRTLAYKSGDEFLLQIAAKSDQTAILCGNDGRYYALSLANI--ASAR 563

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L    S  +   I        ++      Y V A  +      K SD +   + G
Sbjct: 564 GYGEPLSRYFSFAEKTTIVAAAALDPEQ------YYVLAANNAYGFVVKGSDLVAKTKKG 617

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           K  + +   + +  +    +E+ +      G+ + FP   +   +      +  I+  +
Sbjct: 618 KAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPARDLPQQSKGKGNKIMAITQKE 676


>gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 739

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 228/773 (29%), Positives = 382/773 (49%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQ++S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ EV
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++ NP   ++ ++EII  PD+P GA I+  +  I   Y +G GSI  + V   +
Sbjct: 192 INACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +++T +P+QV+ A+++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSAS 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R   + RR +
Sbjct: 308 TKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L G+ IA  N+DEV+ IIR   +P                        
Sbjct: 368 TSLDKVLDRLHILEGMLIAFLNIDEVIDIIRNYDDP------------------------ 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                ++       LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 404 -----SLELQSRFALSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKEKELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+EL  +  +    RR++IVE      +E++D +  E + V +S  G+V    
Sbjct: 459 VKFKNLMKKELKQILADFGDSRRSKIVEADKAQALEEKDLMPSERVTVILSKAGWV---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +       G+  + ED        +++  ++FF+ LG  Y   V + P  S +
Sbjct: 515 ----RCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKLIFFTKLGKAYSMYVDKFP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ + I  I      E +    + + A+  G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKEDEIINI------EFANVAEHFLIASTSGKGFVIPAEDLIANKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       ++  +L  +  G+ +     +  V           I L K 
Sbjct: 623 K---NIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFESFAVLKKGKGK--AIIKLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +                 +SA +R I  D +   +   D    G +
Sbjct: 678 DELKFIELFKPEQE---------LTLSAGKRFIRIDNKNFETYYTDKPSGGGV 721


>gi|115371945|ref|ZP_01459257.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370910|gb|EAU69833.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 482

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 223/406 (54%), Positives = 297/406 (73%), Gaps = 1/406 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M  +G   N+ Y K 
Sbjct: 23  ELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKS 82

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R
Sbjct: 83  ARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVR 142

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL D+ K+TVDF PNYD S  EP+V+  ++PN+LVNG  GIAVGM TNIP HN
Sbjct: 143 MDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHN 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GEV+DG + +ID+P   +  LM+ I GPDFPT A I GR GI  AY TGRG I IR  +
Sbjct: 203 MGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATITGREGIARAYETGRGQITIRART 262

Query: 255 HIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE    GDRE I++TEIPYQVNKA ++EKIA+LVREK++  I+D+RDESDRQG R+ IE
Sbjct: 263 EIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIE 322

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A + V+LN L+  T L++ F   M+A++G +P    L  +L  F++ R +V+ RRT
Sbjct: 323 LKRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRTLNLKELLDRFISHRRDVITRRT 382

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           +Y L KA  R H++ GL +A   +D VV +IR S +P+ AR  LM 
Sbjct: 383 RYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMH 428


>gi|12045056|ref|NP_072866.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|1352714|sp|P47446|PARC_MYCGE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3844802|gb|AAC71422.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|166078896|gb|ABY79514.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 781

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 209/728 (28%), Positives = 351/728 (48%), Gaps = 43/728 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +++   +   +I +    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   DQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTT 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+++IYDA+ RM+Q W      +   GN GSVDGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S +EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E++D     ID P+ +L  +++I++GPDFPTG  +     + + Y  G+G  +
Sbjct: 182 IAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+    +   + +  QI +T+IPY+  KA ++++I E++ + ++  I  + D SDR G R
Sbjct: 242 IQAKYEV---NKNLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIR 298

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I+ K    A+ I+  L+++T LQ  F++N   +    P +  L+  L  F+ F  E++
Sbjct: 299 IIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELI 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + + KY L  A  R  +++GL  A++ +D+++++IR + +   AR +L+           
Sbjct: 359 INKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDN--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT     ++  E N L   +     
Sbjct: 410 -----------------FKFTFNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQ 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +++S      ++K++    K +    RR++I        +E+ + I  +   V ++  G 
Sbjct: 453 LIASEKARNKLLKKQFEGYKKQFHQQRRSQICGFINQKKVEESELIENKTYGVLITKAGN 512

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
             +   +         K        + D +     ++    +   +SLG +    V++L 
Sbjct: 513 YHKFESNQLLKSTTDFK-------SESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKLA 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S       +     L + E I  +        S N   +V  +K G V+R  L+    
Sbjct: 566 FNSKNKLASLVSKKPILLEYETIVFVGTMN----SVNQPILVLTSKLGMVKRIDLTKLNI 621

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                 + + L  +D ++S      +  I L +       F  + I + +    +GV+G+
Sbjct: 622 KPLKATLCISLRDKDHLVSAFLQQDDKLICLVSDHNYYTVFHTNEIPLISS-KGMGVKGM 680

Query: 728 SLAKGDQV 735
            L   DQ+
Sbjct: 681 KLKLEDQI 688


>gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523]
          Length = 741

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 234/773 (30%), Positives = 398/773 (51%), Gaps = 70/773 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D     AA RYTE RL K 
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKY 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E+
Sbjct: 132 AVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEI 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
           ++ C+ ++  PD  ++ ++EII  PD+P GA I+  +  I   Y +G GSI  + V   +
Sbjct: 192 INACLQLLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYD 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL--K 315
                   +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++     
Sbjct: 252 NHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSAT 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
              +   I+  L   T L+  F VNM  +    +P+   L+ +LK ++ +R+  + RR +
Sbjct: 308 TKKNIKKIIGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDVLKQWLEYRKNTLRRRLQ 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             L+K  DR H+L GL IA  N+DEV+ IIR   +P     EL  R              
Sbjct: 368 TSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSD---ELQTR-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S 
Sbjct: 411 ------------FTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +   ++K+E   +  +    RR++++  E    +E++D +  E + + +S  G++    
Sbjct: 459 VKFRNLMKKEFKQILADFGDSRRSKVIAAEKAQALEEKDLMPSERVTIILSKAGWI---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP  S +
Sbjct: 515 ----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLP--SAR 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   + L++ ++I ++      E      Y + A++ G        D I    +G
Sbjct: 569 GYGEHITTYIPLDKQDQIISMAFVNAAE------YFLIASESGKGFVIPAEDLITNKVTG 622

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K    +   D++       Q++ +L  +  G+ +    S+  +   +   G   I L K 
Sbjct: 623 K---NIFDADDVFKFIPFDQDHKMLAISSEGRIIVRDFSSFALL--KKGKGKSIIRLDKK 677

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           D++  + +          R      ++A +R I  D++ I +  +D    G +
Sbjct: 678 DKLKFIELF---------RANQELTLNAGKRFIRIDSKNIETYYSDKPSGGGV 721


>gi|220928824|ref|YP_002505733.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
 gi|219999152|gb|ACL75753.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
          Length = 728

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 213/773 (27%), Positives = 385/773 (49%), Gaps = 62/773 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +   +IT+ ++++Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +    K  
Sbjct: 3   HKNLVEQNITETLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLTGAKT- 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPP--AAER 129
           K + I G+ M K +PHG+ AIY+ + RM + + +L    ++ +GNFG         AA R
Sbjct: 61  KSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFVDSKGNFGKQYSRDMKFAAPR 119

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K    +  D+ K+TV+F  NYDG+ +EPV+L   +P +LVN   GIAVGMA+N
Sbjct: 120 YTEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTTFPTILVNSNQGIAVGMASN 179

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSI 248
           I + NL E+     A+ID+ ++ L+     ++ PDF +G   I     I++ Y  GRG  
Sbjct: 180 ICSFNLVEICKTTSALIDDENVVLED---YLKAPDFSSGGQLIYSAKEIRDIYKNGRGGF 236

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R     +K +     I + EIPY     A++++I EL++  +I +I D+RDE+D  G 
Sbjct: 237 KVRARYKYDKENN---CIEIIEIPYTTTVEAIIDQIIELIKGGKIREITDVRDETDLSGL 293

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ I+L++    D+++N+L++ T LQ  FS N   L   +P    +  IL  ++ FR E 
Sbjct: 294 KLTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILINGRPRVMGVRTILNEWLNFRVEC 353

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  Y + K  D+ H+L+GL   + ++D+ ++IIR +         LM          
Sbjct: 354 IKRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGTEQEAKVVPNLMT--------- 404

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + E+Q   I E++L  L      +   E  +L  EI E  
Sbjct: 405 -----------------GFGIDEIQADYIAEIKLRNLNKEYILNRVGETENLIKEIAELK 447

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
           DI  + +++  II+++L  +  +   PRRT I+  E + ++  E  I   ++ V ++   
Sbjct: 448 DIHGNDNKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKVFLTEHN 507

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++PL   RA            ++DED +           +L F++   VYK +++ +
Sbjct: 508 YLKKIPLVSLRAN-------PEHKLKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYEI 560

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     + G+ L N+L L+  E+I  I      E      Y++F  ++G   + ++S + 
Sbjct: 561 PDCKASSLGEYLTNLLGLDNDEKIIYITATNNYEG-----YMLFFYENGKGAKIEMSGYA 615

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K+A    S   ++ +   T++ +++  + + + + F  ++I     +NS GV+ 
Sbjct: 616 TKTNRKKLANAYYSGSPLIRMIFITEDIELIAISSINKLLVFNTNSINPKTTKNSQGVQI 675

Query: 727 ISLAKG---------DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           ++  KG         D+++   +  +   +      Y+K      + +S D E
Sbjct: 676 LTSKKGSLMTDIKTLDEMVLSNVDYYRTKNIPAVGYYIKEEDKTEKQMSLDLE 728


>gi|119390532|pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390533|pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390534|pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390535|pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|224036402|pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036403|pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036410|pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036411|pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118792|pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118793|pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789386|pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789387|pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789394|pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789395|pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789470|pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789471|pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 496

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 213/515 (41%), Positives = 318/515 (61%), Gaps = 26/515 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
              +  ++K+EL  VK +  TPR + + +    +E
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKALE 490


>gi|284050490|ref|ZP_06380700.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 451

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 228/477 (47%), Positives = 311/477 (65%), Gaps = 32/477 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ G+V+GKYHPHG+ ++
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQSV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVD 152
           YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL       LL  +G+ TVD
Sbjct: 61  YDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLATIGNEGLLTQVGEATVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+D S QEP VL A+ P +++NG  GIAVGMATNIP HNLGEVVDG +A+IDNPD+ 
Sbjct: 121 FTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHNLGEVVDGLIALIDNPDLC 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-----SGDREQIV 267
              LM++I GPDFPTG  I+   GIK AY +GRGSIV+RGV+ IE+         +  IV
Sbjct: 181 DQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGVAKIEQVPTSGRKRTKNAIV 240

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G RVVIELKR A+ +V+L+ L
Sbjct: 241 VTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIRVVIELKREATPEVVLHNL 300

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y++T L S F    +AL   +P + +L  IL+ F+ FRE+ ++RR +  L  A  R H++
Sbjct: 301 YQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQTLLRRYRSELEIAERREHLV 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL  A++ LDEV+ I+R +P+  +A+  L  R                          +
Sbjct: 361 GGLLKALSALDEVIDILRNAPDGSSAKMSLETR--------------------------L 394

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
             S  Q  AIL + L RLTGL    ++ E   L  +I+    +LS RS LL  +K+E
Sbjct: 395 DFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLKKE 451


>gi|261367452|ref|ZP_05980335.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
 gi|282570224|gb|EFB75759.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
          Length = 747

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 217/764 (28%), Positives = 357/764 (46%), Gaps = 54/764 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    IT+ ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K 
Sbjct: 27  EIIETPITETLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART-KS 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYT
Sbjct: 85  ANIVGSTMH-LNPHGDAAIYDTMVRMGRSNESLLVPFVDSKGNFGKAYSRDMAYAAARYT 143

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+     L  D+ KDTVDF PNYDG+  EP +L   +P +L N   GIAVGMA+NI 
Sbjct: 144 EAKLEPVCEELFRDIDKDTVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMASNIC 203

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVI 250
           + NL E+ +  +A++ +       L EII  PDF  G  IL     +KN    GRGS+ +
Sbjct: 204 SFNLEELCNATIALMKDAKA---DLKEIIPAPDFVGGGTILYDAAEMKNVLENGRGSVRV 260

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +KT+     I VT IP      A+++KI ELV+  +I +I+D+RDE+D  G ++
Sbjct: 261 RAQWSYDKTNN---CIDVTHIPPTTTVEAIMDKITELVKLGKIREISDMRDETDLNGLKL 317

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRG   D ++ +L++ T L+  F+ N   L   +P+   +  IL  ++AFR E V 
Sbjct: 318 TIDLKRGQDPDKLMARLFKATPLEDSFACNFNVLIAGQPKVLGVRDILLEWIAFRAECVR 377

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L   + R H+L GL   + ++D+ + I+R +         LM            
Sbjct: 378 RRTYYDLQGKQKRLHLLQGLKAILLDIDKAIEIVRNTAEEAEVVPNLMI----------- 426

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L  L          E+  L   I++  D+
Sbjct: 427 ---------------GFGIDEVQAEYVAEIKLRHLNREYILKRTAEIEELESAIEDLQDV 471

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L   +R+  II  EL  V  +   PRR  I   V      E E  I    + +  +  GY
Sbjct: 472 LKRPARINKIIMNELSDVAKKYGKPRRCEILYEVPASEAEEPEQQIPDYPVHLFFTRDGY 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++     R             ++D D V      +    +LFF++   VYK   +   
Sbjct: 532 FKKITPQSLRMSGE-------QKLKDGDEVLFTCESTNSVELLFFTNHHQVYKSHAYDFA 584

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                  G  + + L + +GE    ++  P+ +      +++F  ++G   +  LS +  
Sbjct: 585 DSKASVLGDYVASSLGMEEGEVPLYMVVTPDYKG-----WMLFFFQNGKCAKVPLSSYET 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      + E+  +    +E ++ + T   + +    + I   + R++ GV  +
Sbjct: 640 KQNRRKLLKAYSDKAELACMRYLPEETELAIFTSNNRLLLAGSALIPEKSTRDTAGVNVV 699

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           SL K  ++  + +    +     R       +A   L + D+ E
Sbjct: 700 SLKKNARIARVTLSEGLELAEAHRYRVRTLPAAGAILRADDSVE 743



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 26/217 (11%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T+ G   +    ++R+   +         L  GD+V+          +  E + +  H
Sbjct: 525 FFTRDGYFKKITPQSLRMSGEQ--------KLKDGDEVLFTC----ESTNSVELLFFTNH 572

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK-----EQFILTVSEKGFGKRT 812
               +       +   S+  D        EE    L +      + ++L   + G   + 
Sbjct: 573 HQVYKSHAYDFADSKASVLGDYVASSLGMEEGEVPLYMVVTPDYKGWMLFFFQNGKCAKV 632

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
               +       K ++A      ++   L  +  + +  ++ + +    L+      I  
Sbjct: 633 PLSSYETKQNRRKLLKAY-----SDKAELACMRYLPEETELAIFTSNNRLLLAGSALIPE 687

Query: 873 AS-RATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            S R T GV + S  K+ R+    R+  SE ++ AE+
Sbjct: 688 KSTRDTAGVNVVSLKKNARI---ARVTLSEGLELAEA 721


>gi|268610225|ref|ZP_06143952.1| DNA gyrase/topoisomerase IV, subunit A [Ruminococcus flavefaciens
           FD-1]
          Length = 747

 Score =  428 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 221/767 (28%), Positives = 375/767 (48%), Gaps = 54/767 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV-EWNKKYVK 73
            + S  I D ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M + G+   +K+  K
Sbjct: 25  SVVSEKIADTLKKNYMPYAMSVIISRALPEI-DGFKPSHRKLLYMMYKRGLLSPDKERSK 83

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPPAA--ERY 130
            A + GE M K +PHG+ AIY+ L RM + + +L    I+ +GNFG            RY
Sbjct: 84  SANVVGETM-KLNPHGDQAIYETLVRMTRGNEALLHPYIDSKGNFGKQYSSKMHFAAPRY 142

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K  + L  D+ K+TVDF PNYD + QEP +L A +P VLVN   GIAV MA+N+
Sbjct: 143 TEVKLEKICNELFRDIDKETVDFVPNYDNTMQEPTLLPASFPTVLVNSNTGIAVSMASNV 202

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
              NL EV +  +A++ +P+     ++  ++GPDFP G  +L     +   Y TGRGSI 
Sbjct: 203 CPFNLEEVCETTIALMKDPN---HDILSTLKGPDFPGGGFMLYDEAELNKVYETGRGSIK 259

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K +     + +TEIPY     A+++KI ELV+  +I +++ +RDE+D  G +
Sbjct: 260 VRSKYSYDKAAN---CLEITEIPYTTTVEAIIDKIIELVKAGKIREVSYIRDETDIDGLK 316

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKR    D ++ +LYR T LQ  +  N   L    P+   +  IL  + AFREE +
Sbjct: 317 IAIDLKRNTDPDKLMQKLYRLTPLQDSYPCNFNILIAGTPKVMGVREILTEWTAFREECI 376

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L K +++ H+L  L+  + ++D+ +RIIR + N       LM           
Sbjct: 377 QRRTYHDLTKKKEKLHLLEALSKILLDIDKAIRIIRETENEADVVPNLMI---------- 426

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              + E+Q   + E++L  +          E++ L  +I+E  D
Sbjct: 427 ----------------GFGIDEIQAEFVAEIKLRNINKQYILRRVEEVDQLKKDIEEMED 470

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL  + ++  II  EL  V      PR+T       + + E+ D      + + VS  GY
Sbjct: 471 ILRDKKKIRKIIINELRDVIKNYAKPRKTMFYYQSDIEEEEEIDDTPDYPVNLFVSKSGY 530

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++     R             +++ D+++  F  +  T ++FFS     YK K     
Sbjct: 531 FKKITPQSLRMSSE-------HKLKEGDYISQSFEATNKTDLIFFSDKAQAYKSKASAFD 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                  G  +   LS ++ E + T++P  +      + Y+VF  ++G   +  +  +  
Sbjct: 584 DTKASVMGDYVPAKLSFDENENLVTMLPTTDY-----SGYIVFFFENGKAAKVPVKSYET 638

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+A     +  +++     ++ DILL +  G  + F    I   + R+S GV+ +
Sbjct: 639 KTNRKKLAKAYSEKSPLIAALFVGEDCDILLRSSSGHALVFNTGMILPKSTRDSQGVQVM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEIT 773
           +L K   + S  I+   + +  E+       +A +     GDT ++T
Sbjct: 699 TLRKKALLASAVIITDEEREALEKYRSKAVPAAGKPAKELGDTNQLT 745



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 69/210 (32%), Gaps = 23/210 (10%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             +K G   +    ++R+ +           L +GD +           +  + I +   
Sbjct: 524 FVSKSGYFKKITPQSLRMSSEH--------KLKEGDYISQ----SFEATNKTDLIFFSDK 571

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-----FILTVSEKGFGKRT 812
             A +   S   +   S+  D        +E    + +        +I+   E G   + 
Sbjct: 572 AQAYKSKASAFDDTKASVMGDYVPAKLSFDENENLVTMLPTTDYSGYIVFFFENGKAAKV 631

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-R 871
               +       K  +A      +E   L+A   V ++  I+L S  G  +      I  
Sbjct: 632 PVKSYETKTNRKKLAKAY-----SEKSPLIAALFVGEDCDILLRSSSGHALVFNTGMILP 686

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++R ++GV + +  K   + S   I + E
Sbjct: 687 KSTRDSQGVQVMTLRKKALLASAVIITDEE 716


>gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
 gi|2501298|sp|P75352|PARC_MYCPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1673679|gb|AAB95679.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
          Length = 789

 Score =  427 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 366/742 (49%), Gaps = 42/742 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ ++ +   +I D    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   EKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+A+IYDA+ RM+Q W   L  I   GN GS+DGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S  EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+GE++DG    I+NPD DL A+++I++GPDFPTG ++     + N Y TG+G  V
Sbjct: 182 IAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+       T+  + QIV+TEIPY+  KA ++++I EL+ + ++  +  + D SDR G R
Sbjct: 242 IQAKYE-TNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I  K   SAD I+  L+++T LQ  F++N   +    P R  L+     F+AF  E++
Sbjct: 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +   KY L  A  R  ++ GL  AV+ +DE++R+IR + + + A+ +L+ +         
Sbjct: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT      +  E   L   I+    
Sbjct: 412 -----------------YAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAER 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG- 546
           +++       +++ +    K + + PRR +IV       ++D D I  +++ + +SH G 
Sbjct: 455 LIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGI 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  P  + +               ++D +    +V         +SLG +    +++ 
Sbjct: 515 YFKFEPEQLAK--------HLVEFKSEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKT 566

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +     + L     L + E++        D+       +V  ++ G V+R +LS  I
Sbjct: 567 LSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQ--LLVLTSQCGMVKRVELSKVI 624

Query: 667 QINR-SGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              +      M L  RD++++       E  ++            ++          +GV
Sbjct: 625 NTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFATFLAEEIPIISNKGIGV 684

Query: 725 RGISLAKGDQVISMAIVLHADA 746
           +GI L   ++V     +   DA
Sbjct: 685 KGIKLKAEEKVRFAMPLQDNDA 706



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 8/229 (3%)

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS--LAKGDQVI 736
             +D+++        +   + T LG  +  PI             +      L + ++++
Sbjct: 532 SEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLV 591

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSSVEGNISEERCQELK 794
              IV     +    +   +    +R  +S   +T++I S    +  E +       + K
Sbjct: 592 LAGIVNPDKMEQQLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTK 651

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            + + +  VS         + +  I +  G G++   +    +   +    P+ DND ++
Sbjct: 652 GEPKLVCLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEK---VRFAMPLQDNDALV 708

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++  G +    V E+ +ASR + G  +    K   V      + SEI+
Sbjct: 709 VINSDGGVYNFEVVELAVASRMSVGKKLIPKTKT-PVSCFAANKHSEII 756


>gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  427 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 225/667 (33%), Positives = 341/667 (51%), Gaps = 41/667 (6%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           MG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  
Sbjct: 1   MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L+ L ++ VDFR NYDG+  EP VL A++PN+L NG  GIAVGMATNIP HN+ E+VD 
Sbjct: 61  MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           C+ +I  PD   D L++ + GPDFPTG +I+     I NAY TG+G   +R     E   
Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
               QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+RDES      ++    +    
Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVDP 240

Query: 321 DVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +V++  LYR + L+  FS+NM V ++G  P+  ++  +L+AF+  R EV+ RR+ + + K
Sbjct: 241 EVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRMEK 300

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R  VL G  +A  NLD V+ IIR+  +P++A   LM   W    ++ +    D++SY
Sbjct: 301 IDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSA---LMAEDWGKDHVRAM----DEASY 353

Query: 440 TIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              +  T   LSEVQ  AIL +RL  L  L   ++  E ++L  E     D+L +     
Sbjct: 354 VPPAPSTENALSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQW 413

Query: 499 GIIKQELLSVKDELDTP----------RRTRIVEG--LLDMEDEDCIVREDMVVTVSHLG 546
             I  +L   K +              RRT   E   + ++  E  I RE + V  S +G
Sbjct: 414 DTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPLEAMIDREPITVVCSQMG 473

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA          +  +D D    +F   T   +L F S G  Y      L
Sbjct: 474 WI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTL 525

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L    +I  I+             ++ A+  G+       D +
Sbjct: 526 PGG--RGMGEPLRLMVDLPNEVQIVDILIHKA------GRKLLVASSAGDGFIVPEDDVL 577

Query: 667 QINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              RSGK  + +    + ++        + + +  +  + + F +  +         GVR
Sbjct: 578 AQTRSGKQVLNVRGDAKAMICAPVTGDADAVAVVGENRKVLVFGLDELPEMG--RGKGVR 635

Query: 726 GISLAKG 732
                 G
Sbjct: 636 LQKYKDG 642



 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + +L  S  G G      D     RSGK +         +  A++      D D 
Sbjct: 552 IHKAGRKLLVASSAGDGFIVPEDDVLAQTRSGKQVLNV----RGDAKAMICAPVTGDADA 607

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           + +V +   ++   ++E+    R  KGV +      
Sbjct: 608 VAVVGENRKVLVFGLDELPEMGRG-KGVRLQKYKDG 642


>gi|313638150|gb|EFS03408.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 507

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 216/530 (40%), Positives = 331/530 (62%), Gaps = 28/530 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L              
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   SE Q  AI+ L+L RLT     ++++   SL  +I     IL
Sbjct: 412 --------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSXXKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMV 539
              + L+ ++K EL  +K +  TPRRT +   + +  ++ E  +  ED++
Sbjct: 458 GDEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVI 507


>gi|301633131|gb|ADK86685.1| DNA topoisomerase IV, A subunit [Mycoplasma pneumoniae FH]
          Length = 789

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 367/742 (49%), Gaps = 42/742 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ ++ +   +I D    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   EKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+A+IYDA+ RM+Q W   L  I   GN GS+DGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S  EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+GE++DG    I+NPD DL A+++I++GPDFPTG ++     + N Y TG+G  V
Sbjct: 182 IAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+       T+  + QIV+TEIPY+  KA ++++I EL+ + ++  +  + D SDR G R
Sbjct: 242 IQAKYE-TNTAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I  K   SAD I+  L+++T LQ  F++N   +    P R  L+     F+AF  E++
Sbjct: 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +   KY L  A  R  ++ GL  AV+ +DE++R+IR + + + A+ +L+ +         
Sbjct: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT      +  E   L   I+    
Sbjct: 412 -----------------YAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAEC 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG- 546
           +++       +++ +    K + + PRR +IV       ++D D I  +++ + +SH G 
Sbjct: 455 LIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGI 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  P  + +               ++D +    +V         +SLG +    +++ 
Sbjct: 515 YFKFEPEQLAK--------HLVEFKSEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKT 566

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +     + L     L + E++        D+       +V  ++ G V+R +LS  I
Sbjct: 567 LSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQ--LLVLTSQCGMVKRVELSKVI 624

Query: 667 QINR-SGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              +      M L  RD++++      +E  ++            ++          +GV
Sbjct: 625 NTKQIKSSCCMALRERDKLVNAFVQTKREPKLVCLVSSSNSFATFLAEEIPIISNKGIGV 684

Query: 725 RGISLAKGDQVISMAIVLHADA 746
           +GI L   ++V     +   DA
Sbjct: 685 KGIKLKAEEKVRFAMPLQDNDA 706



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 8/229 (3%)

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS--LAKGDQVI 736
             +D+++        +   + T LG  +  PI             +      L + ++++
Sbjct: 532 SEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLV 591

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSSVEGNISEERCQELK 794
              IV     +    +   +    +R  +S   +T++I S    +  E +       + K
Sbjct: 592 LAGIVNPDKMEQQLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTK 651

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            + + +  VS         + +  I +  G G++   +    +   +    P+ DND ++
Sbjct: 652 REPKLVCLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEK---VRFAMPLQDNDALV 708

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++  G +    V E+ +ASR + G  +    K   V      + SEI+
Sbjct: 709 VINSDGGVYNFEVVELAVASRMSVGKKLIPKTKT-PVSCFAANKHSEII 756


>gi|158428820|pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
           Subunit A (Grla) From Staphylococcus Aureus
          Length = 514

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 206/512 (40%), Positives = 316/512 (61%), Gaps = 26/512 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 28  IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 87

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 88  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 147

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 148 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 207

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 208 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 267

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 268 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 327

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 328 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 387

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 388 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 432 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 481

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
            LL +IK+EL  +K +  + R + I   + ++
Sbjct: 482 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEI 513


>gi|256005840|ref|ZP_05430790.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|255990204|gb|EEU00336.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|316940937|gb|ADU74971.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           1313]
          Length = 727

 Score =  425 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/725 (29%), Positives = 367/725 (50%), Gaps = 53/725 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  K
Sbjct: 4   NNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEKT-K 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERY 130
            A + G+ M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG         AA RY
Sbjct: 62  SANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRY 120

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA++I
Sbjct: 121 TEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSI 180

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIV 249
            + NL EV +  V  I + +     L+ I++ PDFPTG   I     ++  Y  GRG+  
Sbjct: 181 CSFNLVEVCNAAVEFIKDENT---DLVGILKAPDFPTGGQLIYNEREMREIYEKGRGTFK 237

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G +
Sbjct: 238 LRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLK 294

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +++KR A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR + +
Sbjct: 295 IALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMDCI 354

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+T Y ++K   + H+L+GL   + ++D+ ++IIR +         LM+          
Sbjct: 355 KRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLME---------- 404

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              + + Q   + E++L  L         +E+ SL  EI E  +
Sbjct: 405 ----------------GFGIDQAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNE 448

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGY 547
           +  S  ++  +I ++L  +  +   PRRT IV      E     + ED  +   ++   Y
Sbjct: 449 LYGSEKKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNY 508

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++PL+  R             +++ DF+           +L FS+   VYK K++ + 
Sbjct: 509 LKKIPLTSLRTS-------PEHKLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIE 561

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                + G+ L N+LSL +GE I  ++   + +      Y++F  ++G V +  L  +  
Sbjct: 562 DCKASSLGEFLSNVLSLEEGEEIIHMVATDDYKG-----YMIFGFENGKVAKIVLESYAT 616

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+ +
Sbjct: 617 KTNRKKLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVL 676

Query: 728 SLAKG 732
              KG
Sbjct: 677 KSKKG 681



 Score = 42.2 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                N  L  TK     + P++++R              L +GD ++   +  H  AD 
Sbjct: 493 LIEDYNLKLFLTKQNYLKKIPLTSLRTSPEH--------KLKEGDFIVQ-ELETHNKADL 543

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS--EK 806
                       +   I             + +     EE    +   +     +   E 
Sbjct: 544 LLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEEIIHMVATDDYKGYMIFGFEN 603

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G   +     +       K   A      N +  LV +  + ++++++  S    ++   
Sbjct: 604 GKVAKIVLESYATKTNRKKLANAY-----NGLSRLVYIGHILEDEELVAFSSLNKVLIFN 658

Query: 867 VNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + I    +R ++GV +  + K   +  +++I E    D
Sbjct: 659 TSNINPKTTRDSQGVQVLKSKKGSVMTHIKKISEVSFTD 697


>gi|125972827|ref|YP_001036737.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
 gi|125713052|gb|ABN51544.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
          Length = 727

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/725 (29%), Positives = 367/725 (50%), Gaps = 53/725 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  K
Sbjct: 4   NNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEKT-K 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERY 130
            A + G+ M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG         AA RY
Sbjct: 62  SANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRY 120

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA++I
Sbjct: 121 TEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSI 180

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIV 249
            + NL EV +  V  I + +     L+ I++ PDFPTG   I     ++  Y  GRG+  
Sbjct: 181 CSFNLVEVCNAAVEFIKDENT---DLVGILKAPDFPTGGQLIYNEREMREIYEKGRGTFK 237

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G +
Sbjct: 238 LRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLK 294

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +++KR A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR + +
Sbjct: 295 IALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMDCI 354

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+T Y ++K   + H+L+GL   + ++D+ ++IIR +         LM+          
Sbjct: 355 KRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMK---------- 404

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              + + Q   + E++L  L         +E+ SL  EI E  +
Sbjct: 405 ----------------GFGIDQAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNE 448

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGY 547
           +  S  ++  +I ++L  +  +   PRRT IV      E     + ED  +   ++   Y
Sbjct: 449 LYGSEKKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNY 508

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++PL+  R             +++ DF+           +L FS+   VYK K++ + 
Sbjct: 509 LKKIPLTSLRTS-------PEHKLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIE 561

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                + G+ L N+LSL +GE I  ++   + +      Y++F  ++G V +  L  +  
Sbjct: 562 DCKASSLGEFLSNVLSLEEGEEIIHMVATDDYKG-----YMIFGFENGKVAKIVLESYAT 616

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+ +
Sbjct: 617 KTNRKKLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVL 676

Query: 728 SLAKG 732
              KG
Sbjct: 677 KSKKG 681



 Score = 42.2 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                N  L  TK     + P++++R              L +GD ++   +  H  AD 
Sbjct: 493 LIEDYNLKLFLTKQNYLKKIPLTSLRTSPEH--------KLKEGDFIVQ-ELETHNKADL 543

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS--EK 806
                       +   I             + +     EE    +   +     +   E 
Sbjct: 544 LLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEEIIHMVATDDYKGYMIFGFEN 603

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G   +     +       K   A      N +  LV +  + ++++++  S    ++   
Sbjct: 604 GKVAKIVLESYATKTNRKKLANAY-----NGLSRLVYIGHILEDEELVAFSSLNKVLIFN 658

Query: 867 VNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + I    +R ++GV +  + K   +  +++I E    D
Sbjct: 659 TSNINPKTTRDSQGVQVLKSKKGSVMTHIKKISEVSFTD 697


>gi|281417026|ref|ZP_06248046.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
 gi|281408428|gb|EFB38686.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
          Length = 727

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 215/725 (29%), Positives = 367/725 (50%), Gaps = 53/725 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  K
Sbjct: 4   NNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEKT-K 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERY 130
            A + G+ M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG         AA RY
Sbjct: 62  SANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMKYAAPRY 120

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA++I
Sbjct: 121 TEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMASSI 180

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIV 249
            + NL EV +  V  I + +     L+ I++ PDFPTG   I     ++  Y  GRG+  
Sbjct: 181 CSFNLVEVCNAAVEFIKDENT---DLVGILKAPDFPTGGQLIYNEREMREIYEKGRGTFK 237

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G +
Sbjct: 238 LRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNGLK 294

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +++KR A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR + +
Sbjct: 295 IALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMDCI 354

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+T Y ++K   + H+L+GL   + ++D+ ++IIR +         LM+          
Sbjct: 355 KRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMK---------- 404

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              + + Q   + E++L  L         +E+ SL  EI E  +
Sbjct: 405 ----------------GFGIDQAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAELNE 448

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGY 547
           +  S  ++  +I ++L  +  +   PRRT IV      E     + ED  +   ++   Y
Sbjct: 449 LYGSEKKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQNY 508

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++PL+  R             +++ DF+           +L FS+   VYK K++ + 
Sbjct: 509 LKKIPLTSLRTS-------PEHKLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIE 561

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                + G+ L N+LSL +GE I  ++   + +      Y++F  ++G V +  L  +  
Sbjct: 562 DCKASSLGEFLSNVLSLEEGEEIIHMVATDDYKG-----YMIFGFENGKVAKIVLESYAT 616

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+ +
Sbjct: 617 KTNRKKLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVL 676

Query: 728 SLAKG 732
              KG
Sbjct: 677 KSKKG 681



 Score = 42.2 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 17/219 (7%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                N  L  TK     + P++++R              L +GD ++   +  H  AD 
Sbjct: 493 LIEDYNLKLFLTKQNYLKKIPLTSLRTSPEH--------KLKEGDFIVQ-ELETHNKADL 543

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS--EK 806
                       +   I             + +     EE    +   +     +   E 
Sbjct: 544 LLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEEIIHMVATDDYKGYMIFGFEN 603

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G   +     +       K   A      N +  LV +  + ++++++  S    ++   
Sbjct: 604 GKVAKIVLESYATKTNRKKLANAY-----NGLSRLVYIGHILEDEELVAFSSLNKVLIFN 658

Query: 867 VNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + I    +R ++GV +  + K   +  +++I E    D
Sbjct: 659 TSNINPKTTRDSQGVQVLKSKKGSVMTHIKKISEVSFTD 697


>gi|1321899|emb|CAA63254.1| gyrA [Mycobacterium smegmatis]
          Length = 469

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/409 (50%), Positives = 279/409 (68%), Gaps = 5/409 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     ++N     +   +A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +I
Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALI 409


>gi|295102725|emb|CBL00270.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 749

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 214/764 (28%), Positives = 356/764 (46%), Gaps = 54/764 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K 
Sbjct: 28  SVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLIKGART-KS 85

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYT
Sbjct: 86  ANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYT 144

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+     L  D+ K+TVDF PNYDG+  EP +L   +P +L N   GIAVGMA NI 
Sbjct: 145 EAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNIC 204

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
           + NL E+ +  +A++ +   D+   M     PDF  G  IL     +++ +  GRGS+ +
Sbjct: 205 SFNLAELCNTTIALMKDAKHDISTTM---PAPDFVGGGQILYDEAQMRDIFENGRGSVKV 261

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R              I +T+IP      A+++KIAELV+  +I +I+D+RDE+D  G ++
Sbjct: 262 RARY---AAVPGENMIEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  IL+ + AFR E V 
Sbjct: 319 TLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILQEWTAFRMECVR 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L+    R H+L GLA  + ++D+ + IIR +         LM            
Sbjct: 379 RRTYYDLHGKEKRLHLLKGLAAILMDIDKAIHIIRTTEEETEVVPNLMI----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L  L          E+  L  +I +  DI
Sbjct: 428 ---------------GFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEADIADLNDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGY 547
           L+  +R+  II +EL  V  +   PRR+ I+  L + E            + V  +  GY
Sbjct: 473 LAKPARIRKIIMKELADVAKKYGQPRRSEILYDLPEEEGGAEEEAVPDYPVTVFFTREGY 532

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++P    R             +++ D +        +   LFF+    VYK ++  L 
Sbjct: 533 LKKIPPQSLRT-------AGAHKLKEGDEIVRQVETRNNVEALFFTDKQQVYKVRLAELE 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G     G  L   L +++GE I  ++   +      + Y++F    G   +  LS +  
Sbjct: 586 DGKVAQMGIYLPGRLGMDEGENILDMVITSDY-----SGYMLFFFAGGRCAKIPLSSYAT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      ++ + ++    +E ++ + T  G+ +    + I     R+S GV  +
Sbjct: 641 KQNRRKLLKAYCDKEPLATLFFLPEETELAIRTSAGRMLLVGTAQIAAKTTRDSQGVAVV 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +L K   + S+      +     R       +    + + D  E
Sbjct: 701 TLKKNQTIASVVPADTLELANPHRYRVRSLPATGALVRAEDEGE 744



 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 64/172 (37%), Gaps = 13/172 (7%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +GD+++     +    + +      K    + RL   +  ++  +         + E
Sbjct: 548 KLKEGDEIVRQ---VETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIYLPGRLGMDE 604

Query: 788 -ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            E   ++ +   +   +L     G   +     +       K ++A    +      L  
Sbjct: 605 GENILDMVITSDYSGYMLFFFAGGRCAKIPLSSYATKQNRRKLLKAYCDKE-----PLAT 659

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAKDERVVSV 894
           +F + +  ++ + +  G ++ V   +I    +R ++GV + +  K++ + SV
Sbjct: 660 LFFLPEETELAIRTSAGRMLLVGTAQIAAKTTRDSQGVAVVTLKKNQTIASV 711


>gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 431

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 224/456 (49%), Positives = 317/456 (69%), Gaps = 26/456 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                           +++Q R+IL+++L RLTGL 
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLE 431


>gi|225017578|ref|ZP_03706770.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
 gi|224949638|gb|EEG30847.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
          Length = 744

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 205/729 (28%), Positives = 370/729 (50%), Gaps = 53/729 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    ITD ++ +Y+ YA++VIL RA+P++ DG KP HR++L+ M +MG+    +  K A
Sbjct: 26  VEEQLITDTLEKNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLTGART-KSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGDP--PAAERYTE 132
            I G+ M + +PHG+  IY+ + R+++ + +L    ++ +GNFG         AA RYTE
Sbjct: 84  NIVGQTM-RLNPHGDQTIYETMVRLSRGYQALLHPYVDSKGNFGKAYSRDMAYAASRYTE 142

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L    + L  D+ KDTV+F PNYD S +EP +L   +P++LVN   GIAV MA+ I  
Sbjct: 143 AKLDPICNELFRDIDKDTVEFVPNYDNSTKEPRLLPTTFPSILVNSNVGIAVSMASAICP 202

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
            NL EV +  +A + N       L EI++GPDFP G  ++   + ++  Y TGRGSI +R
Sbjct: 203 FNLQEVCEATIAFMKN---SECDLTEILKGPDFPGGGFLVQNPSELEKIYRTGRGSIRVR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              + +K++     I +TEIP      A+++KI +LV++ ++ +I+D+RDE+D  G ++ 
Sbjct: 260 SRYNYDKSNN---CIEITEIPPTTTVEAIMDKIIDLVKQNKVKEISDMRDETDLSGLKLT 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKRG   D ++ +L++ T L+  +S N   L    P    +  +L  +VAFR E + R
Sbjct: 317 IDLKRGTDPDRLMRRLFKLTPLEDSYSCNFNVLIAGTPRVLGVYDLLDEWVAFRVECIKR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L K +++ H+L GL   + ++D+ +RI+R +   +     LM             
Sbjct: 377 RVWFELTKKKEKLHLLQGLQKILLDIDKAIRIVRETEEEKEVVPNLMI------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            + E+Q   + E++L  L          E++ L  EI +  +IL
Sbjct: 425 --------------GFGIDEIQAEYVAEIKLRHLNREYILKRTAEIDQLIQEIADMEEIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           + + R+  II +EL  V  +   PRR+  +  + + D E+E+ I    + V +S  GY K
Sbjct: 471 ADKRRVKQIIIKELKDVIKKYAQPRRSLFIYPDSVFDDEEEEEIPNYPVHVFLSEQGYFK 530

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++     R             ++++D +      + +T +LFF+    VYK  + + P  
Sbjct: 531 KITPQSLRMSGE-------HKLKEDDRMITHIETTNNTDLLFFTDKMQVYKYNLSQFPDT 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G+ +   L   + ER+  +    +   +     ++F  ++G V +  +  +    
Sbjct: 584 KASVLGEYVPAKLGFEEEERLVGMALTKDYSGN-----ILFFFENGKVAKVPIKSYETKT 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              K+A     +  ++++    ++ + ++T+   + + F  + I V A +N+ GV+ ++L
Sbjct: 639 NRKKLANAYSDKSPLIALFPEAEDGEYIITSNNQKVLLFSSAMIAVKATKNTQGVQVMTL 698

Query: 730 AKGDQVISM 738
            K   V S+
Sbjct: 699 NKNCTVESV 707



 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 11/177 (6%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D++I+   +   +            +         DT+     +   +  G   E
Sbjct: 544 KLKEDDRMITH--IETTNNTDLLFFTDKMQVYKYNLSQFPDTKASVLGEYVPAKLGFEEE 601

Query: 788 ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ER   + L + +   IL   E G   +     +       K   A      ++   L+A+
Sbjct: 602 ERLVGMALTKDYSGNILFFFENGKVAKVPIKSYETKTNRKKLANAY-----SDKSPLIAL 656

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRES 900
           FP  ++ + I+ S+   ++      I + A++ T+GV + +  K+  V SV   +E 
Sbjct: 657 FPEAEDGEYIITSNNQKVLLFSSAMIAVKATKNTQGVQVMTLNKNCTVESVVPYQEE 713


>gi|313115470|ref|ZP_07800935.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622180|gb|EFQ05670.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 749

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 216/768 (28%), Positives = 359/768 (46%), Gaps = 54/768 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K 
Sbjct: 28  SVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART-KS 85

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYT
Sbjct: 86  ANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYT 144

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+     L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA NI 
Sbjct: 145 EAKLEGVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNIC 204

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
           + NL E+    VA++ +   D+   M     PDF  G  IL     ++  Y  GRGS+ +
Sbjct: 205 SFNLAELCATTVALMKDEHHDISTTM---PAPDFVGGGQILYDEAQMREIYENGRGSVKV 261

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    +         I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  G ++
Sbjct: 262 RARYSV---VPGENMIEVTQIPPTTTVEAIMDKIAELVKAGKVKEISDMRDETDLNGLKL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR E V 
Sbjct: 319 TLDLKRGVDADKLMAKLFKATPLEDSFSANFNILVSGQPRVMGVREILKEWTAFRVECVR 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L+    R H+L GLA  + ++D+ ++IIR +         LM            
Sbjct: 379 RRTYYDLHGKEKRLHLLKGLAAILLDIDKAIKIIRTTEEETEVVPNLMI----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L  L         +E+  L  +I +  DI
Sbjct: 428 ---------------GFGIDEVQADYVAEIKLRHLNREYILKRTSEIEQLEKDIADLNDI 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGY 547
           L+  +R+  II  EL  V  +   PRR+ I+  L + E+           + V  +  GY
Sbjct: 473 LAKPARIRRIIINELNDVAKKYGQPRRSEILYDLPEDENGSEEEEAPDYPVTVFFTREGY 532

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++P        +G +      +++ D +        +   LFF+    VYK ++  L 
Sbjct: 533 FKKIPP-------QGLRTAGAHKLKEGDEIVQQIETRNNVEALFFTDKQQVYKVRLAELE 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G     G  +   L +++GE + +++   +      + +++F    G   +  LS +  
Sbjct: 586 DGKVAQMGIFIPGRLGMDEGENVLSMVITSDY-----SGFMLFFFASGKCAKIPLSSYAT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      ++ +  +    +E ++ + T   + +    + I   A R+S GV  +
Sbjct: 641 KQNRRKLLKAYCDKEPLAKLFFLPEETELAIRTSASRMLLVGTAQIAAKATRDSQGVAVV 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           +L K   + S+      +     R       +    L + D  E  SL
Sbjct: 701 TLKKNQTIASVVPADTLELANPHRYRVRSLPATGALLRAEDEGEQMSL 748



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 63/172 (36%), Gaps = 13/172 (7%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +GD+++     +    + +      K    + RL   +  ++  +         + E
Sbjct: 548 KLKEGDEIV---QQIETRNNVEALFFTDKQQVYKVRLAELEDGKVAQMGIFIPGRLGMDE 604

Query: 788 -ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            E    + +   +   +L     G   +     +       K ++A    +      L  
Sbjct: 605 GENVLSMVITSDYSGFMLFFFASGKCAKIPLSSYATKQNRRKLLKAYCDKE-----PLAK 659

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAKDERVVSV 894
           +F + +  ++ + +    ++ V   +I   A+R ++GV + +  K++ + SV
Sbjct: 660 LFFLPEETELAIRTSASRMLLVGTAQIAAKATRDSQGVAVVTLKKNQTIASV 711


>gi|167749706|ref|ZP_02421833.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
 gi|167657329|gb|EDS01459.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score =  423 bits (1086), Expect = e-115,   Method: Composition-based stats.
 Identities = 212/722 (29%), Positives = 360/722 (49%), Gaps = 53/722 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  ITD +  +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A
Sbjct: 27  VENQPITDTLTENYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMGLLTGART-KSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPPAAE--RYTE 132
            I G+ M K +PHG+ AIY+ + R+A+ + +L    ++ +GNFG       +    RYTE
Sbjct: 85  NIVGQTM-KLNPHGDMAIYETMVRLARGNEALLHPYVDSKGNFGKAYSRDMSFAASRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L      +  D+ +D VDF PNYD S  EPV+L  R+P VLVN   GIAV MA+NI +
Sbjct: 144 AKLDPICAEIFADIDRDIVDFVPNYDNSMTEPVLLPTRFPAVLVNNNVGIAVSMASNICS 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
            NL EV +   A++ N       ++  ++GPDFP G  IL     ++  YATGRGS+ +R
Sbjct: 204 FNLSEVCETAAALMKN---LEHDIVSTLKGPDFPGGGFILQDENELRRIYATGRGSVKVR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                +KT+     I VTEIP      A+++KI E V+  ++ +I+D+RDESD  G ++ 
Sbjct: 261 SKYIYDKTAN---CIEVTEIPPTTTIEAIIDKIVEQVKLGKLKEISDVRDESDLSGLKIT 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+LKRG  ++ ++ +L+R T LQ +FS N   L G  P+   +  IL+ +  FR   V R
Sbjct: 318 IDLKRGQDSEAVMKKLFRITPLQDVFSCNFNILVGGMPKVMGVAEILEQWTDFRITCVKR 377

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +TK+ L + +++ H+L GL   + ++D+ ++IIR + +       LM             
Sbjct: 378 KTKFELARKKEKLHLLTGLKKILLDIDKAIKIIRETEDDAEVVPNLMI------------ 425

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            + E Q   + +++L  +          E++SL  EI +  DIL
Sbjct: 426 --------------GFGIDETQAEYVADIKLRNINKGYILKRIEEIDSLKEEIADMEDIL 471

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
           SS  R+  II  EL  +  +   PR+T  + G    + E E+ I    + +  +  GY K
Sbjct: 472 SSERRVKQIIISELGDIAKKYGKPRKTMFIYGTEDEENEAEEEIPDYPVNLFFTREGYFK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++     R             +++ D + + +  S    +LFF+    VYK +      G
Sbjct: 532 KITPQSLRMSGE-------QKLKENDEIIETYDGSNRAELLFFTDKFQVYKARACDFEDG 584

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G  L   L L+  ERI  ++   +      +  +V   ++G   +  ++ F    
Sbjct: 585 KASVMGDYLPVKLELDPDERIIKMIAAEDY-----SGTLVMFFENGKCAKVPMASFETKT 639

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R  K+A   +    ++S+     + + +L+++ G+ + F    I   A R++ GV+ + L
Sbjct: 640 RRKKLANAYNDGSPLVSMTLIDGDCEFMLSSEAGKVMIFNTVLILPKAARDTQGVQVMRL 699

Query: 730 AK 731
            +
Sbjct: 700 TR 701



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 15/164 (9%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND--SSVEGNI 785
            L + D++I      +  ++  E + +       +       +   S+  D         
Sbjct: 545 KLKENDEIIE----TYDGSNRAELLFFTDKFQVYKARACDFEDGKASVMGDYLPVKLELD 600

Query: 786 SEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            +ER  ++   E +   ++   E G   +     F    R  K   A      N+   LV
Sbjct: 601 PDERIIKMIAAEDYSGTLVMFFENGKCAKVPMASFETKTRRKKLANAY-----NDGSPLV 655

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFST 885
           ++  ++ + + +L S+ G ++      I   A+R T+GV +   
Sbjct: 656 SMTLIDGDCEFMLSSEAGKVMIFNTVLILPKAARDTQGVQVMRL 699


>gi|307692620|ref|ZP_07634857.1| DNA gyrase/topoisomerase IV subunit A [Ruminococcaceae bacterium
           D16]
          Length = 750

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 219/759 (28%), Positives = 355/759 (46%), Gaps = 59/759 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    IT+ ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M QM +       K 
Sbjct: 24  EVLEQPITETLELNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYQMKLL-GGARTKS 81

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A + G+ M K +PHG+AAIYD + R+++ + +L    ++ +GNFG V       AA RYT
Sbjct: 82  ANVVGQTM-KLNPHGDAAIYDTMVRLSRGYGALLHPFVDSKGNFGKVYSRDMAWAASRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL      L  D+ +DTVDF  NYDG  +EP +L   +PNVLV+   GIAVGMA+N+ 
Sbjct: 141 EVRLDAICGELFRDIDQDTVDFVDNYDGKMKEPTLLPTTFPNVLVSANQGIAVGMASNLC 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
             NLGEV D  +A + +P+     LM  ++GPD PTG  +I     +   Y TGRGS  +
Sbjct: 201 GFNLGEVCDTTIAYLKDPEC---DLMATLKGPDLPTGGELIYDEKALGEIYRTGRGSFKV 257

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R              I + EIPY     A+++K+AEL++  +I +IAD+RDE+D  G ++
Sbjct: 258 RSKWRY---LKSENLIEIYEIPYSTTSEAIMDKVAELIKAGKIKEIADMRDETDLSGLKL 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRG   D ++ +L+R T L    S N   L    P    +  IL+ + A+R + V 
Sbjct: 315 TIDLKRGTDPDKLMAKLFRATPLMDSQSCNFNILIAGMPRVMGVREILEEWTAWRMDCVR 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + + K  D+ H+L GL   + ++D  + IIR +         LM            
Sbjct: 375 RRVYHEMKKKEDKLHLLKGLRRILLDIDRAIAIIRETEEDAEVVPNLMI----------- 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + ++Q   + ++RL  +          E+ +L  EI +    
Sbjct: 424 ---------------GFGIDQIQAEYVADIRLRNINKEYILKRTQEVEALEGEIADLQAT 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           ++   R+  II +EL  VK +   PRRT IV    L +   ED      + + +S  GY+
Sbjct: 469 VNDPKRIRKIITKELTDVKKKYAQPRRTDIVYEHMLEEEPQEDETPDYPVNLFLSREGYL 528

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++     R         S    ++ D     +  +    +L F+     YK ++     
Sbjct: 529 KKITPQSLRM-------ASDQKYKEGDGPFLQWEATNRDELLVFTDKQQCYKTRLSEFDD 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                 G  L   LS+   ER+      P D S      ++F  ++G V R +LS +   
Sbjct: 582 SKASVLGDYLPTKLSMEAEERVLWA-CIPGDYSGQ----LLFFFENGKVARVELSAYQTQ 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R  K+      +  ++S     ++ ++ + +  G+C+ F  +A+     R + GV  ++
Sbjct: 637 TRRKKLTGAYSDKSPLVSALLLREDLEMAVYSSDGRCMIFHTAALAPKTTRTTQGVNVMA 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           L          +V  A    D  I  +    A+   I+G
Sbjct: 697 LKPK------RVVTDAKPLADTPIVNLSRYRARSLPIAG 729



 Score = 46.5 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 12/156 (7%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKND--SSVEGNISEERCQELKLKEQF---IL 801
           + DE + +       +  +S   +   S+  D   +     +EER     +   +   +L
Sbjct: 558 NRDELLVFTDKQQCYKTRLSEFDDSKASVLGDYLPTKLSMEAEERVLWACIPGDYSGQLL 617

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
              E G   R     ++   R  K   A      ++   LV+   + ++ ++ + S  G 
Sbjct: 618 FFFENGKVARVELSAYQTQTRRKKLTGAY-----SDKSPLVSALLLREDLEMAVYSSDGR 672

Query: 862 LIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVER 896
            +      +    +R T+GV + +     RVV+  +
Sbjct: 673 CMIFHTAALAPKTTRTTQGVNVMALKPK-RVVTDAK 707


>gi|303238190|ref|ZP_07324726.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
 gi|302594236|gb|EFL63948.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
          Length = 727

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 218/726 (30%), Positives = 366/726 (50%), Gaps = 53/726 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+    +  
Sbjct: 3   KSRLIEQKIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGGRT- 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPPAA--ER 129
           K A + G+ M K +PHG+ AIY+ + R+ + + +L    ++ +GNFG            R
Sbjct: 61  KSANVVGQTM-KLNPHGDMAIYETMVRLTRGNDALLHPYVDSKGNFGKQYSRDMHFAAPR 119

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K    L  DL KD VDF  NYDG+ +EP +L   +PN+LV+   GIAVGMA+N
Sbjct: 120 YTEVKLDKICEELFRDLDKDAVDFVDNYDGTMKEPTLLPITFPNILVSANQGIAVGMASN 179

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSI 248
           I + NL EV +  +  I+N +I++      ++ PDF +G   I     IK  Y TGRGS 
Sbjct: 180 ICSFNLNEVCETAIQFINNENIEVSD---YLKAPDFTSGGQLIYKEKDIKEIYNTGRGSF 236

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG    +K +     I + EIPY     A+++ I ELV+  +I DI D+RDE+D  G 
Sbjct: 237 KVRGKYRYDKENN---CIEIYEIPYTTTTEAIIDSIIELVKNNKIKDILDVRDETDLDGL 293

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           +V I+++R    D ++N+LY+ T L+  F  N   L   +P+   + GIL  ++ FR + 
Sbjct: 294 KVTIDIRRNTDPDALMNKLYKLTPLEDSFGCNFNLLINGRPKVLGIKGILANWIEFRVDC 353

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+T + +NK  DR H+LVGL   + ++D+ +R+IR +         LM          
Sbjct: 354 IKRQTLFDINKKSDRLHLLVGLKKILLDIDKAIRLIRETEEDAMVIPNLMD--------- 404

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +  VQ   I E++L  L      D  +E++ L  EI E  
Sbjct: 405 -----------------GFGVDHVQAEFIAEIKLRNLNKEYILDKVSEIDKLEKEIAELK 447

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLG 546
           DI  +  ++  II ++L  V  +   PRRT I   E + ++  E  I   ++ + ++   
Sbjct: 448 DIYGNDKKIKKIIVKQLGEVSKKYGKPRRTDILHEEHVEEITQEHFIEDYNLKIFLTDHN 507

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++PL+  R             ++D+D +           +L FS+   VYK +++ +
Sbjct: 508 YLKKIPLTSLRTS-------PEHKLKDDDSIVQEIETHNKADLLLFSNKQTVYKIRIYEI 560

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 + G  L N+L L   ERI  I+   + +      Y++FA ++G V +  L  + 
Sbjct: 561 DDCKASSLGDYLTNLLGLEADERIINIVATDDYKG-----YMIFAFENGKVAKIDLESYA 615

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K+A       +I+ ++  T++ +++  + L + + F  S I   + R+S GV+ 
Sbjct: 616 TKTNRKKLANAYSDLSKIIYMQYITEDEELVAFSSLKKVLIFSTSNINPKSTRDSQGVQV 675

Query: 727 ISLAKG 732
           +   KG
Sbjct: 676 LKEKKG 681



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 70/182 (38%), Gaps = 13/182 (7%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNIS 786
            L   D ++     +      D  +   K    + R+   D  + +SL +  +++ G  +
Sbjct: 524 KLKDDDSIV---QEIETHNKADLLLFSNKQTVYKIRIYEIDDCKASSLGDYLTNLLGLEA 580

Query: 787 EERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +ER   +   + +   ++   E G   +     +       K   A      +++  ++ 
Sbjct: 581 DERIINIVATDDYKGYMIFAFENGKVAKIDLESYATKTNRKKLANAY-----SDLSKIIY 635

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEI 902
           +  + ++++++  S    ++    + I   S R ++GV +    K   + +V+R+ E   
Sbjct: 636 MQYITEDEELVAFSSLKKVLIFSTSNINPKSTRDSQGVQVLKEKKGSVMTTVKRLSEVSF 695

Query: 903 VD 904
            D
Sbjct: 696 KD 697


>gi|289449920|ref|YP_003475278.1| DNA gyrase/topoisomerase IV subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184467|gb|ADC90892.1| DNA gyrase/topoisomerase IV, A subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 727

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 213/754 (28%), Positives = 362/754 (48%), Gaps = 54/754 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I+D ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +MG+    +  K A + G+
Sbjct: 12  ISDTLEKNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLSGSRT-KSANVVGQ 69

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPPAAE--RYTECRLQK 137
            M K +PHG+AAIY+ + R+ + + SL    ++ +GNFG            RYTE +L K
Sbjct: 70  TM-KLNPHGDAAIYETMVRLTRGNASLLHPYVDSKGNFGKQYSRDMQFAASRYTEVKLDK 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               L   + KD V F PNYD + QEP +L A +P+VLVN   GIAVGMA+NI   NL E
Sbjct: 129 ICTELFRAIDKDVVTFTPNYDATMQEPTLLPATFPSVLVNANQGIAVGMASNICPFNLRE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +A I NPD  ++   + I+GPDFP G   I+ R  +   + +GRG++ +R    +
Sbjct: 189 VCSATIAYIKNPDCVIE---KYIKGPDFPGGGEFIVDREELAKVFDSGRGTLRLRARYRV 245

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +  +     I + EIPY     A+L+ +AELV+  +  +I+D+RDE+D  G ++ IELKR
Sbjct: 246 DLKNR---LIEIYEIPYSTTVEAVLDNLAELVKAGKAKEISDVRDETDLNGLKLTIELKR 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A  + ++N+L++ TSLQ+ F+ N   L   +P    +  ++  ++ FR   V R T + 
Sbjct: 303 AAEPEALMNRLFKQTSLQANFACNFNVLIDGRPRVLGVKQLIGEWLNFRRTCVRRETAFD 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + + + H+L GL   + ++D+ +RIIR + N       L +                 
Sbjct: 363 LQEKQAKLHLLEGLNTIMLDIDKAIRIIRETENETDVIPNLCR----------------- 405

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       +  VQ   I E++L  L          + + L  EI +  + L+S S 
Sbjct: 406 ---------GFAIDAVQAEYIAEIKLRNLNREYLLKRTADRSELTEEIAQLQNRLASTSL 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VSHLGYVKRVPLS 554
           L   I + L  V ++    RRT +++     E     + ED  +   ++  GY+K++PL+
Sbjct: 457 LDAEIIRTLQQVAEKYGQDRRTVLIDAGEITEITGEDLIEDYRLKYFLTAHGYLKKLPLT 516

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
             R+          + ++DED +           ++ F+    VYK     +    P   
Sbjct: 517 SLRS-------AGELKIKDEDEIISEIEAGNRDEIMVFTDQANVYKISGHEIKDCKPSEL 569

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ L  +L     E++   +  P +         +FA  +G V R  +S +    +  K+
Sbjct: 570 GEYLPGLLDFAPEEKVI-YLHVPGEYVGD----FMFAFANGKVARVPVSAYKTKTKRRKL 624

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
                 +  ++ +E   +    +L + L + + F    I     RN+ GV+ +S AK + 
Sbjct: 625 VAAYSDKSPLVGIEFAPENKSYVLISNLSKVLIFDSEQIPAKVTRNNQGVQVMS-AKRNS 683

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           V++      A    D      K++ A    +  D
Sbjct: 684 VVNKFSTPEAAGIQDSPYYRTKNLPAIGYYLKED 717


>gi|225353988|gb|ACN88537.1| DNA gyrase subunit A [Arcobacter halophilus]
          Length = 456

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 228/482 (47%), Positives = 320/482 (66%), Gaps = 27/482 (5%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++++YDAL RMAQ++S+R  L++GQGNFGSVDGD  AA R
Sbjct: 2   PYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDNAAAMR 61

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG  GIAVGMAT 
Sbjct: 62  YTEARMTKVSEEILRDIDKDTVNFVQNYDDTLKEPAVLPTRVPTLLLNGSEGIAVGMATK 121

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++D  + ++DN     + LM+ I+GPDFPTG  I GR GI +AY TGRG + 
Sbjct: 122 IPPHNLKELLDAVLYMVDNKGATAEDLMQFIQGPDFPTGGTIFGRRGIIDAYKTGRGRVK 181

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE T G +E IV+ E+PYQVNK+ ++E+IA L ++K++  I+++RDESDR+G R
Sbjct: 182 IRAKHHIE-TKGKKEVIVLDELPYQVNKSRLIEQIATLAKDKQVEGISEVRDESDREGIR 240

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELK+ A ++++LN LY+ T L++ F + ++A++  +P+ F L  +L  F++ R+ V+
Sbjct: 241 VVIELKKDAMSEIVLNNLYKSTPLETTFGIILLAVHNKEPKVFNLPELLNLFLSHRKTVI 300

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  R         
Sbjct: 301 IRRTIFDLEKAKARAHILEGLKIALDNIDEVVQIIRSSANDAEAKEKLQDR--------- 351

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS +Q++AIL++RL RLTGL RD +  E   L   I E   
Sbjct: 352 -----------------FGLSIIQSQAILDMRLGRLTGLQRDKLEAEYQELLALIAELES 394

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S  +L  IIK+E+  +K++    RRT I +   +++ ED I  E MVVT++H GYVK
Sbjct: 395 ILKSEDKLNEIIKEEVAEIKEKYSDERRTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVK 454

Query: 550 RV 551
           RV
Sbjct: 455 RV 456


>gi|302524595|ref|ZP_07276937.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302433490|gb|EFL05306.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 832

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 251/777 (32%), Positives = 363/777 (46%), Gaps = 60/777 (7%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           + ++     +    MGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA
Sbjct: 79  DHEFATEGFVVHNCMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAA 137

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  L+ +LG+DTVDFRPNYDGS +EP VL A YPN+LVNG  GIAVGMA
Sbjct: 138 SRYTEARMSNEAMLLVGELGEDTVDFRPNYDGSLEEPSVLPAAYPNLLVNGTSGIAVGMA 197

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+  HNLGEV+     +I++P+  LD LME + GPD PTG  +LG   ++ AY TGRG 
Sbjct: 198 TNMIPHNLGEVIGAARWLINHPNATLDKLMEYVPGPDLPTGGSLLGLDEVRKAYETGRGV 257

Query: 248 IVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESD 304
           + +R         G   R+ I VTE+PY V    ++EKI + V + KR+  IAD++D +D
Sbjct: 258 VRMRANVETGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTD 317

Query: 305 RQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R+   R+VIE K G +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+ 
Sbjct: 318 RENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLK 377

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RRT+Y   K  +R H++ GL IA+ N+D+V+R+IR S N   A+  LM +   
Sbjct: 378 HRYEVVTRRTRYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAAAAKDGLMTK--- 434

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+Q   IL+  L RLT   R ++ NE + L  E
Sbjct: 435 -----------------------FKLSEIQATYILDTPLRRLTKYDRLELENEQDKLRAE 471

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------GLLDMEDEDCIVRE 536
           I E   IL   S L  ++  EL  +  +  T RRTR+++                 +  +
Sbjct: 472 IAELTTILEDESVLKKLVSTELAKIAKDFPTERRTRLIDGDLKEVLAASKPSGPLEVADD 531

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQ---RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              V +S  G V R       A    RR G+ +        D V+ +   +    VL  +
Sbjct: 532 PCQVILSATGLVARTAAESEEASEVRRRNGRVK-------HDAVSAVVHTTARGQVLLVT 584

Query: 594 SLGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           S G  +K  V  LP+   QA       G A   ++ L +GER+  I P    E + ++  
Sbjct: 585 SRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGERVVGIAPL--GEQAGDSPG 642

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCV 706
           +   T+ G V+         +       + L   DEI+           +   +     +
Sbjct: 643 LAIGTRGGVVKVCAPDW--PVRSDEFEVISLKPGDEIVGATWLTDGNETLAFISSDSSLL 700

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  S IR      S G+ G+ LA     I    +   D ++ E +       + +    
Sbjct: 701 RFAASLIRPQGT-KSGGMAGMKLAANATAIFFGAIRTDDEEHGEPMVVTATGQSVKVTPF 759

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
            +                +  E   ++          S  G        D R     
Sbjct: 760 SEYPAKGRATGGVRAHRFLKGETEVQVAWVGPRPAGASRTGDPVELPETDLRRDGSG 816



 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQ---INRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R             R+G++       D + +V   T    +LL T
Sbjct: 530 DDPCQVILSATGLVARTAAESEEASEVRRRNGRVK-----HDAVSAVVHTTARGQVLLVT 584

Query: 701 KLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADYDERI 752
             G+  +  +  + V   +        G+     + L KG++V+ +A +     D     
Sbjct: 585 SRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGERVVGIAPLGEQAGDSPGLA 644

Query: 753 CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +       A    +  D  E+ SLK    + G         L    + +  +S    
Sbjct: 645 IGTRGGVVKVCAPDWPVRSDEFEVISLKPGDEIVG------ATWLTDGNETLAFISSDSS 698

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND--QIILVSDKGTLIR-V 865
             R ++   R       G+    ++  N           +D +  + ++V+  G  ++  
Sbjct: 699 LLRFAASLIRPQGTKSGGMAGMKLAA-NATAIFFGAIRTDDEEHGEPMVVTATGQSVKVT 757

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           P +E     RAT GV      K E  V V  +
Sbjct: 758 PFSEYPAKGRATGGVRAHRFLKGETEVQVAWV 789


>gi|317133208|ref|YP_004092522.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471187|gb|ADU27791.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 744

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/761 (27%), Positives = 372/761 (48%), Gaps = 53/761 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S  IT  +  +Y+ YA++VI+ RAIP++ DG KP HR+IL+ M +MG+    +  K 
Sbjct: 24  KVLSEPITHTLTANYMPYAMSVIISRAIPEI-DGFKPSHRKILYTMYKMGLLSGART-KS 81

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPPAAE--RYT 131
           A + G+ M + +PHG+ AIY+ + R+++ + +L    ++ +GNFG       A    RYT
Sbjct: 82  ANVVGQTM-RLNPHGDMAIYETMVRLSRGNEALLHAYVDSKGNFGKAYSRDMAFAASRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L    + L  D+ K TVDF  NYD + QEPV+L A +P++L+N   GIAVGMA++I 
Sbjct: 141 EVKLDPICNELFRDIDKKTVDFVDNYDSTMQEPVLLPAAFPSILINSNIGIAVGMASSIC 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
             NL EV +  + ++ +P      L+ +++ PDFP G ++L     +++ Y TGRGS+ +
Sbjct: 201 PFNLTEVCETTIRLMKDPAA---DLLPLLKAPDFPGGGLVLYDADTLRSVYETGRGSLRV 257

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    +      R  I +TEIP      A++++I ELV+  ++ +IAD+RDE+D  G ++
Sbjct: 258 RARYQL--DKAGRF-IEITEIPPTTTVEAIMDRIVELVKTGKVREIADIRDETDLSGLKL 314

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRGA  D ++++L+R T L+  F  N   L G +P+   + G+L+A+ AFR + V 
Sbjct: 315 TIDLKRGADGDKLMSRLFRLTPLEDTFGCNFNVLVGGRPQVLGVRGLLRAWTAFRMDCVR 374

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L +A+DR H+L GL   + ++D+ VRI+R +         LM            
Sbjct: 375 RRLRFDLGRAKDRLHLLRGLEKILLDIDKAVRIVRETDEESEVVPNLMI----------- 423

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L         +   E+  L  EI +    
Sbjct: 424 ---------------GFGIDEVQAEFVAEIKLRHFNRAYILEKTQEIEQLEREIADLEAT 468

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L   +R+L +I  EL ++  +   PRR+ I+  + +    DE+ I    + + ++  GY 
Sbjct: 469 LGEDARMLRLIADELRAIVKKYGRPRRSLILYDVKEETAPDEEEIPAYPVTLFLTREGYF 528

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++     R             +++ D +      +    +LFF+    VYK  V     
Sbjct: 529 KKITPQSLRMSGE-------QKLKESDALVQTVESTNGCELLFFTDRCQVYKSSVSEFED 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     G  L   L  ++GE +  ++   +      + +++F   +G   + +L+ +   
Sbjct: 582 GKASVLGDYLPARLGFDEGEALRRMVVAKQY-----DGWLLFIYANGKAAKVELASYKTK 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R  K+      ++ ++++   T++ +++LT+  G+ +     A+ V     + GV  ++
Sbjct: 637 TRRRKLVNAYSDKESLVAMFHLTEDREVVLTSSAGKMLLLDTGAVPVKTTHTTQGVTAMT 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           L  G  V    +          R        A +     DT
Sbjct: 697 LKPGQAVTDAQLYEEGTFKNPGRYRVRNLPGAGQMPAREDT 737



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 85/250 (34%), Gaps = 31/250 (12%)

Query: 659 RNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  +  + +  RS  +    +     +E +           L  T+ G   +    ++R+
Sbjct: 484 RAIVKKYGRPRRSLILYDVKEETAPDEEEIPAYPV-----TLFLTREGYFKKITPQSLRM 538

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              +         L + D ++          +  E + +       +  +S   +   S+
Sbjct: 539 SGEQ--------KLKESDALVQTV----ESTNGCELLFFTDRCQVYKSSVSEFEDGKASV 586

Query: 776 KNDSSVEGNISEE-----RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
             D        +E     R    K  + ++L +   G   +     ++   R  K + A 
Sbjct: 587 LGDYLPARLGFDEGEALRRMVVAKQYDGWLLFIYANGKAAKVELASYKTKTRRRKLVNAY 646

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDE 889
              +     +LVA+F + ++ +++L S  G ++ +    + +  +  T+GV   +    +
Sbjct: 647 SDKE-----SLVAMFHLTEDREVVLTSSAGKMLLLDTGAVPVKTTHTTQGVTAMTLKPGQ 701

Query: 890 RVVSVERIRE 899
            V   +   E
Sbjct: 702 AVTDAQLYEE 711


>gi|326201734|ref|ZP_08191605.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
 gi|325988334|gb|EGD49159.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
          Length = 728

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 212/771 (27%), Positives = 383/771 (49%), Gaps = 62/771 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +   +ITD ++++Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +    K  
Sbjct: 3   HKNLVEQNITDTLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLAGAKT- 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPP--AAER 129
           K + I G+ M K +PHG+ AIY+ + RM + + +L    I+ +GNFG         AA R
Sbjct: 61  KSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFIDSKGNFGKQYSRDMKFAAPR 119

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K    +  D+ K+TVDF  NYDG+ +EPV+L   +P++LVN   GIAVGMA+N
Sbjct: 120 YTEAKLDKLCEEIFKDIDKNTVDFVDNYDGTMKEPVLLPTTFPSILVNSNQGIAVGMASN 179

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSI 248
           I + NL E+     A+ID+ +I ++     ++ PDF +G   I     I++ Y  GRGS 
Sbjct: 180 ICSFNLEEICKTTSALIDDENIVIED---YLQAPDFSSGGQLIYSAKEIRDIYNNGRGSF 236

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R   + +  +     I + EIPY     A++++I EL++  +I +I D+RDE+D  G 
Sbjct: 237 KVRAKYNYDNKNN---CIEIVEIPYTTTVEAIIDQIIELIKGGKIKEITDVRDETDLSGL 293

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ ++L++    D+++ +L++ T LQ  F+ N   L   +P    +  IL  +++FR + 
Sbjct: 294 KLTLDLRKNTDPDMLMKKLFKLTPLQDSFNCNFNILINGRPRVMGVRTILNEWLSFRVDC 353

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  Y + K  D+ H+L+GL   + ++D+ + IIR +         L+          
Sbjct: 354 IKRQILYDIQKKSDKLHLLMGLKKILLDIDKAIEIIRKTEQEVMVVPNLIS--------- 404

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + ++Q   I E++L  L      +   E +SL  EI E  
Sbjct: 405 -----------------GFDIDQIQAEYIAEIKLRNLNKEYILNRVGETDSLIKEIAELK 447

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLG 546
           D   +  ++  II+++L  +  +   PRRT I+  E + ++  E  I   ++ + ++   
Sbjct: 448 DTHGNHKKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKIFLTEQN 507

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++PL   RA            ++DED +           +L F++   VYK K++ +
Sbjct: 508 YLKKIPLVSLRAN-------PEHKLKDEDTIVQEIETHNKADLLLFTNKFNVYKSKIYEI 560

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     + G+ L N+L L+  E+I  I      E      Y++F  ++G   +  LS + 
Sbjct: 561 PDCKASSLGEYLTNLLGLDSDEKIIYITATDNYEG-----YMLFFYENGKGAKIDLSGYA 615

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K+A    +   ++ +   T++ +++  + + + + F   +I V   +NS GV+ 
Sbjct: 616 TKTNRKKLANAYYNGSPLIRMFFATEDIELIAISSINKMLVFNTESIGVKTTKNSQGVQI 675

Query: 727 ISLAKG---------DQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           ++  KG         D+ +   I  +   +     CY+K      + +S D
Sbjct: 676 LTSKKGSIMTGIKTLDEKVLSNIDYYRTKNIPAIGCYIKEEDKTEKQMSLD 726


>gi|213051497|ref|ZP_03344375.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 520

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 284/473 (60%), Gaps = 12/473 (2%)

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ 
Sbjct: 3   RDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIS 62

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ 
Sbjct: 63  AFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIS 122

Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           R W+  ++  +++   D +             DG  YL+E Q +AIL+LRL +LTGL  +
Sbjct: 123 RPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHE 182

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            + +E   L  +I E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED
Sbjct: 183 KLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIED 242

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L 
Sbjct: 243 LISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILC 302

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  A
Sbjct: 303 FSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMA 359

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   
Sbjct: 360 TASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKED 419

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           A+R    R + GVRGI LA  D+V+S+ I     A  D     ++      R+
Sbjct: 420 AVRAMG-RTATGVRGIKLAGDDKVVSLIIPRGEGAIPDRNAKRLREAYRSGRV 471



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 15/230 (6%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+   A   D   E    +  +QE+ ++  +  G     P++       R   G     
Sbjct: 227 RRTEITANSADINIE----DLISQEDVVVTLSHQGYVKYQPLTDYEA-QRRGGKGKSAAR 281

Query: 729 LAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + D +  + +    D         R+ +MK               I +L    + E  
Sbjct: 282 IKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 341

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +    +E   +   +   +  G  K+T+  +F     +G  I A +++  +E   L+ V
Sbjct: 342 TAILPVRE-YEEGVNVFMATASGTVKKTALTEFSRPRSAG--IIAVNLNDGDE---LIGV 395

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 396 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 445



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +A +LH     D  +  ++      R   GD          + +  N ++   ++L  +E
Sbjct: 195 IAELLHILGSADRLMEVIREEMELIRDQFGDERR-------TEITANSADINIEDLISQE 247

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ++T+S +G+ K     D+    R GKG  A  + + + I  L+     N +D I+  S
Sbjct: 248 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVA---NTHDTILCFS 304

Query: 858 DKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            +G L  + V ++  ASR  +G   V +     +ER+ ++  +RE E 
Sbjct: 305 SRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 352


>gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis]
          Length = 436

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/459 (47%), Positives = 307/459 (66%), Gaps = 27/459 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                              SE Q  AILELRL +LTGL 
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLE 436


>gi|218134383|ref|ZP_03463187.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989768|gb|EEC55779.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 511

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 187/566 (33%), Positives = 297/566 (52%), Gaps = 85/566 (15%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +Q  F V M+AL   +P+   L+ +L  ++  ++EV+ RRT+Y LNKA +RAH+L GL I
Sbjct: 1   MQDTFGVIMLALVDNQPKVLNLLDMLIYYLRHQKEVITRRTQYDLNKAEERAHILQGLMI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+D V+ IIR S N +TA+  LM+                             LS+V
Sbjct: 61  ALDNIDRVISIIRGSENVQTAKESLMKE--------------------------FELSDV 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AI+++RL  LTGL R  +  E   L  +I+E   IL+   +LLG+I+ E+L + D+ 
Sbjct: 95  QAQAIVDMRLRALTGLERAKLEAEYAELIKKIEEYKAILADEKKLLGVIRTEILVIADKY 154

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I     D+  ED I  E +V+  ++LGY+KR+ L  ++AQ RGGKG  G+   
Sbjct: 155 GDDRRTSIGFDEFDISMEDIIPDEPVVIARTNLGYIKRMTLDNFKAQHRGGKGIRGMQTI 214

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+D++ DLF+ ++H  ++FF++ G  Y+ K + +P     ARG A+IN+L L  GE IT 
Sbjct: 215 DQDYIEDLFMTTSHHYLMFFTNTGRAYRMKAYEIPEAGRTARGTAVINLLQLQPGETITA 274

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           ++P  E     +N Y+  AT++G V++ K++++  I ++G  A+ +   DE++ V+    
Sbjct: 275 VIPIREYN---DNNYLFMATRNGIVKKTKVTEYSNIRKNGIQAITIRDNDELIEVKLTDD 331

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
             DI+L TKLG C+RF  + +R   GR S+GV G+ L   DQV+ M I    D+      
Sbjct: 332 TKDIMLVTKLGMCIRFKETDVRP-TGRTSMGVIGMDLMDEDQVVGMQIDSQGDS------ 384

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                          +L VSEKG GKRT
Sbjct: 385 -----------------------------------------------LLIVSEKGLGKRT 397

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              +F   +R GKG++   +++  + G +V V  V+D  +I+L++ +G +IR+   +I I
Sbjct: 398 LIEEFTTQHRGGKGVKCYKINE--KTGNVVGVKAVDDTREIMLITTEGIIIRIKAQDISI 455

Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898
             R T GV + +      V SV ++R
Sbjct: 456 LGRITSGVKLINLEDGVTVASVSKVR 481



 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 21/235 (8%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           + + LD+ D ++S         I+  ++  Q  +  +      +   +  +  + L    
Sbjct: 58  LMIALDNIDRVIS---------IIRGSENVQTAKESLMKEFELSDVQAQAIVDMRLRALT 108

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS------E 787
            +    +         +   Y   ++ +++L+     EI  + +    +   S      +
Sbjct: 109 GLERAKLEAEYAELIKKIEEYKAILADEKKLLGVIRTEILVIADKYGDDRRTSIGFDEFD 168

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              +++   E  ++  +  G+ KR +  +F+  +R GKGIR       + I  L   F  
Sbjct: 169 ISMEDIIPDEPVVIARTNLGYIKRMTLDNFKAQHRGGKGIRGMQTIDQDYIEDL---FMT 225

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRE 899
             +  ++  ++ G   R+   EI  A R  +G  + +       E + +V  IRE
Sbjct: 226 TSHHYLMFFTNTGRAYRMKAYEIPEAGRTARGTAVINLLQLQPGETITAVIPIRE 280


>gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis]
          Length = 435

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/458 (47%), Positives = 307/458 (67%), Gaps = 27/458 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
                              SE Q  AILELRL +LTGL
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGL 435


>gi|326791468|ref|YP_004309289.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542232|gb|ADZ84091.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 714

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 210/749 (28%), Positives = 375/749 (50%), Gaps = 56/749 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +   +IT+ ++++Y+ YA++VI+ RA+P++ DG KP HR++L+ M +M +    +  
Sbjct: 2   DQFVIKQNITETLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMNLIKGLRT- 59

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWS-LRLLLIEGQGNFGSVDGDP--PAAER 129
           K A I G+ M K +PHG+ AIY+ + R+ + +S L    ++ +GNFG V       AA R
Sbjct: 60  KSANIVGQTM-KLNPHGDGAIYETMVRLTKGYSALITPFVDSKGNFGKVYSRDMAYAAAR 118

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L +    + +D+ +D VDF  NYDG+ +EPV+L  R+PN+LVN   GIAVGMA+N
Sbjct: 119 YTEAKLSEICTEVFNDIEEDAVDFVDNYDGTLKEPVLLPTRFPNILVNPNQGIAVGMASN 178

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSI 248
             + NL EV +  +A + N D     ++E I  PDFPTG  +IL  T ++    TG+GS 
Sbjct: 179 FCSFNLKEVCNATIAYLKNEDA---DVLEHIIAPDFPTGGQIILDETEMREVLETGKGSF 235

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R   H  K       I + EIPY     A+++KI ELV+  +I +I D+RDE+D  G 
Sbjct: 236 KVRAKYHYIKKEN---CIEIIEIPYTTTVEAIIDKIEELVKAGKIKEITDVRDETDLSGL 292

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ I+LKR    ++++ +L++ T L+  FS N   L    P+      I+K +  FR++ 
Sbjct: 293 KLTIDLKRSTDPEMLMQKLFKSTPLEDSFSCNFNLLINGMPKVLGFKEIIKEWCEFRQQC 352

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVR+ ++ + K   R H+L+GL   + ++D+ + I+R +   +     LM          
Sbjct: 353 VVRKYRFAIEKMEKRYHLLIGLKQILLDIDKAIEIVRHTEKEKDVVPRLMAH-------- 404

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +SE+Q   + E++L  L      +   EL+ L  +I E  
Sbjct: 405 ------------------FEISEMQADYVAEIKLRHLNKQYILETLKELDELEKKIAELK 446

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLG 546
           DI+ +  ++  +I  EL  ++ +  T R+T +++    ++ +   + ED  V +  +   
Sbjct: 447 DIIENPKKVKKVISDELKVIQKKFGTERQTEVIKHTEVVKVKHEELIEDYNVKLFFTDHQ 506

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++ L   R+            ++++D +      S  + +L F++   VYK K+  +
Sbjct: 507 YLKKITLVSLRSSGE-------QKLKEDDTIIQEIEASNRSDLLLFTNKSNVYKLKLHEI 559

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L N+L L +GE+I  I    +        Y+ F    G V +  ++ + 
Sbjct: 560 EDTKASQFGVYLPNLLDLEEGEQILAIHSTTDY-----TGYIAFGFSTGKVAKVPVAAYE 614

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K+      +   + +    +E+ +LLT +  +    P+  +     R++ GV+ 
Sbjct: 615 TKTNRKKLIKAFYGKSPCVGIAFVEEEDILLLTREDDKVGVVPVVLLEEKQKRDANGVQA 674

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYM 755
           +S+ K    I M  ++ A    +E I  +
Sbjct: 675 LSITKK---IGMKKLVKASELTEEMIARL 700


>gi|295104659|emb|CBL02203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 749

 Score =  415 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 211/768 (27%), Positives = 353/768 (45%), Gaps = 54/768 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K 
Sbjct: 28  SVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART-KS 85

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYT
Sbjct: 86  ANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYT 144

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+     L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA NI 
Sbjct: 145 EAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNIC 204

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
           + NL E+    VA++ +   D+   M     PDF  G  I+     ++  Y  GRGS+ +
Sbjct: 205 SFNLAELCATTVALMKDEHHDIGTTM---PAPDFVGGGQIVYDEAQMREIYENGRGSVKV 261

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   +          I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  G ++
Sbjct: 262 RARYN---AVPGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLNGLKL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR E V 
Sbjct: 319 TLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILKEWTAFRVECVR 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L+    R H+L GLA  + ++D+ +RIIR +         LM            
Sbjct: 379 RRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMI----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L  L          E+  L  +I +  D+
Sbjct: 428 ---------------GFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDV 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGY 547
           L+  +R+  II  EL  V  +   PR + I+  L + +            + V  +  GY
Sbjct: 473 LAKPARIRRIIINELNDVAKKYGKPRCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGY 532

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++P    R             +++ D +        +   LFF+    VYK ++  L 
Sbjct: 533 FKKIPPQSLRT-------AGAHKLKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELE 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G     G  +   L +++GE + +++   +      + +++F    G   +  LS +  
Sbjct: 586 DGKVAQMGIFIPGRLGMDEGENVLSMVITGDY-----SGFMLFFFASGKCAKIPLSSYAT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      ++ +  +    +E ++ + T   + +    + I     R+S GV  +
Sbjct: 641 KQNRRKLLKAYSDKEPLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTTRDSQGVAVV 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           +L K   + S+      +     R       +    + + D  E  SL
Sbjct: 701 TLKKNQTIASVVPADTLELANPHRYRVRSLPATGALIRTEDEGEQMSL 748



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 21/202 (10%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T+ G   + P  ++R              L +GD++I     L    + +      K 
Sbjct: 526 FFTREGYFKKIPPQSLRTAGAH--------KLKEGDEII---QQLETRNNVEALFFTDKQ 574

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISE-ERCQELKLKEQF---ILTVSEKGFGKRTS 813
              + RL   +  ++  +         + E E    + +   +   +L     G   +  
Sbjct: 575 QVYKVRLAELEDGKVAQMGIFIPGRLGMDEGENVLSMVITGDYSGFMLFFFASGKCAKIP 634

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-I 872
              +       K ++A    +      L  +    +  ++ + +    ++ V   +I   
Sbjct: 635 LSSYATKQNRRKLLKAYSDKE-----PLAMMLYQPEETELAIRTSASRMLLVGTAQIAAK 689

Query: 873 ASRATKGVVIFSTAKDERVVSV 894
            +R ++GV + +  K++ + SV
Sbjct: 690 TTRDSQGVAVVTLKKNQTIASV 711


>gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis]
          Length = 434

 Score =  415 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 216/457 (47%), Positives = 306/457 (66%), Gaps = 27/457 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +R
Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243

Query: 252 GVSHI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+ E +   RE I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G RV
Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+ 
Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++           
Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                              SE Q  AILELRL +LTG
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTG 434


>gi|160943135|ref|ZP_02090372.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445604|gb|EDP22607.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
          Length = 749

 Score =  415 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 211/768 (27%), Positives = 353/768 (45%), Gaps = 54/768 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K 
Sbjct: 28  SVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART-KS 85

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG         AA RYT
Sbjct: 86  ANIVGSTMH-LNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYT 144

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+     L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA NI 
Sbjct: 145 EAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMACNIC 204

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
           + NL E+    VA++ +   D+   M     PDF  G  I+     ++  Y  GRGS+ +
Sbjct: 205 SFNLAELCATTVALMKDEHHDIGTTM---PAPDFVGGGQIVYDEAQMREIYENGRGSVKV 261

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   +          I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  G ++
Sbjct: 262 RARYN---AVPGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLNGLKL 318

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR E V 
Sbjct: 319 TLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILKEWTAFRIECVR 378

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L+    R H+L GLA  + ++D+ +RIIR +         LM            
Sbjct: 379 RRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTEEETEVVPNLMI----------- 427

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + EVQ   + E++L  L          E+  L  +I +  D+
Sbjct: 428 ---------------GFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIADLNDV 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMVVTVSHLGY 547
           L+  +R+  II  EL  V  +   PR + I+  L + +            + V  +  GY
Sbjct: 473 LAKPARIRRIIINELNDVAKKYGKPRCSEILYDLPEEDAAAEEEAVPDYPVTVFFTREGY 532

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++P    R             +++ D +        +   LFF+    VYK ++  L 
Sbjct: 533 FKKIPPQSLRT-------AGAHKLKEGDEIIQQLETRNNVEALFFTDKQQVYKVRLAELE 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G     G  +   L +++GE + +++   +      + +++F    G   +  LS +  
Sbjct: 586 DGKVAQMGIFIPGRLGMDEGENVLSMVITGDY-----SGFMLFFFASGKCAKIPLSSYAT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      ++ +  +    +E ++ + T   + +    + I     R+S GV  +
Sbjct: 641 KQNRRKLLKAYSDKEPLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTTRDSQGVAVV 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           +L K   + S+      +     R       +    + + D  E  SL
Sbjct: 701 TLKKNQTIASVVPADTLELANPHRYRVRSLPATGALIRAEDEGEQMSL 748



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 21/202 (10%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T+ G   + P  ++R              L +GD++I     L    + +      K 
Sbjct: 526 FFTREGYFKKIPPQSLRTAGAH--------KLKEGDEII---QQLETRNNVEALFFTDKQ 574

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISE-ERCQELKLKEQF---ILTVSEKGFGKRTS 813
              + RL   +  ++  +         + E E    + +   +   +L     G   +  
Sbjct: 575 QVYKVRLAELEDGKVAQMGIFIPGRLGMDEGENVLSMVITGDYSGFMLFFFASGKCAKIP 634

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-I 872
              +       K ++A    +      L  +    +  ++ + +    ++ V   +I   
Sbjct: 635 LSSYATKQNRRKLLKAYSDKE-----PLAMMLYQPEETELAIRTSASRMLLVGTAQIAAK 689

Query: 873 ASRATKGVVIFSTAKDERVVSV 894
            +R ++GV + +  K++ + SV
Sbjct: 690 TTRDSQGVAVVTLKKNQTIASV 711


>gi|154496378|ref|ZP_02035074.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
 gi|150274461|gb|EDN01538.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
          Length = 747

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 217/788 (27%), Positives = 359/788 (45%), Gaps = 64/788 (8%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     +  + K           +    IT+ ++ +Y+ YA++VI+ RAIP++ DG K
Sbjct: 1   MAKKKAPEEGAKHKNNPNVMGLRPEVLEQPITETLEINYMPYAMSVIVSRAIPEI-DGFK 59

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLL 109
           P HR++L+ M QM +       K A + G+ M K +PHG+AAIYD + R+++ + +L   
Sbjct: 60  PSHRKLLYTMYQMKLL-GGARTKSANVVGQTM-KLNPHGDAAIYDTMVRLSRGYGALLHP 117

Query: 110 LIEGQGNFGSVDGDP--PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           L++ +GNFG V       AA RYTE RL      L  D+ +DTVDF  NYDG+ QEP +L
Sbjct: 118 LVDSKGNFGKVYSRDMAWAASRYTEVRLDGICAELFRDIDQDTVDFVDNYDGTMQEPTLL 177

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT 227
              +PNVLV+   GIAVGMA+N+   NL EV D  V  + +PD     L  +++ PDFPT
Sbjct: 178 PTTFPNVLVSANQGIAVGMASNLCGFNLAEVCDATVEYLKHPDC---DLTAVLKAPDFPT 234

Query: 228 GAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           G  +L     I   Y TGRGS  +R              I + EIPY     A+++K+AE
Sbjct: 235 GGELLYDAAEIAQIYNTGRGSFKVRARWRY---LKSENLIEIYEIPYSTTVEAIMDKVAE 291

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L++  ++ +IAD+RDE+D  G ++ I+LKRG   D ++ +L+R T L   F+ N   L  
Sbjct: 292 LIKAGKVKEIADMRDETDLTGLKLTIDLKRGTDPDKLMQKLFRATPLMDSFACNFNILIA 351

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
             P    +  IL+ + A+R E V RRT +++ K +++ H+L GL   + ++D  ++IIR 
Sbjct: 352 GMPRVMGVREILEEWTAWRMEGVRRRTYFVMKKKQEKLHLLKGLKKILLDIDRAIKIIRE 411

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           +         LM                              +  +Q   + +++L  + 
Sbjct: 412 TEEDAEVVPNLMI--------------------------GFGIDNIQAEYVADIKLRNIN 445

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
                    E ++L  EI +  DI+S+  R+  II  EL +VK +   PRRT I+     
Sbjct: 446 KEYILKRIEETSTLEEEIADLQDIVSNPGRIKKIIIAELGAVKKKYAQPRRTEIIYEHQR 505

Query: 527 MEDEDCI---VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           + + +         +   +S  GY K++  +  R              ++ D     +  
Sbjct: 506 LSEPEPEEEIPDYPVTAFLSREGYFKKITPASLRMNSE-------QKYKEGDGAWLQWEC 558

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +    +L F+     YK ++           G  L   L +  GE +      P D S  
Sbjct: 559 TNRDELLVFTDRQQCYKTRMSDFDDAKASVLGDYLPTKLEMEAGESVVWA-CVPGDYSGN 617

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               ++F  ++G   R +LS +    R  K+      +  + +     ++ ++ + +  G
Sbjct: 618 ----LLFFFRNGKAARVELSAYQTQTRRRKLTGAYSDKSPLAAALLLREDLELAVISTEG 673

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +C+ F  + +   A R + GV  ++L     V  +  V  +      R        A   
Sbjct: 674 RCLIFHTALLAPKATRTTQGVNVMTLKPKYSVDRVEPVEGSPIVNTARYRARSLPVAGAL 733

Query: 764 LISGDTEE 771
           L   D  E
Sbjct: 734 LKGEDRGE 741



 Score = 46.1 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 14/161 (8%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK-----EQFIL 801
           + DE + +       +  +S   +   S+  D        E     +           +L
Sbjct: 560 NRDELLVFTDRQQCYKTRMSDFDDAKASVLGDYLPTKLEMEAGESVVWACVPGDYSGNLL 619

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
                G   R     ++   R  K   A      ++   L A   + ++ ++ ++S +G 
Sbjct: 620 FFFRNGKAARVELSAYQTQTRRRKLTGAY-----SDKSPLAAALLLREDLELAVISTEGR 674

Query: 862 LIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +      +   A+R T+GV + +        SV+R+   E
Sbjct: 675 CLIFHTALLAPKATRTTQGVNVMTLKPK---YSVDRVEPVE 712


>gi|255030145|ref|ZP_05302096.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 519

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 181/567 (31%), Positives = 295/567 (52%), Gaps = 86/567 (15%)

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL IA
Sbjct: 4   QTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEGLRIA 63

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + N+D ++++IR S   + A+  LM +                            LS+ Q
Sbjct: 64  LDNIDAIIKLIRGSKTSDVAKEGLMTQ--------------------------FNLSDKQ 97

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K +  
Sbjct: 98  AQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYA 157

Query: 514 TPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT I+ G L  +EDED I  E++ +T++  GY+KR+PLS YR+QRRGG+G  G+   
Sbjct: 158 DKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTH 217

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           ++DFV  L   STH ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  
Sbjct: 218 EDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNA 277

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           ++   E     ++ Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+    
Sbjct: 278 VINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDG 334

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
             ++++ TK GQ + FP   IRV   R + GVRGI L + D+VI M ++   +       
Sbjct: 335 SKNMIIATKHGQSIYFPEENIRVMG-RTAAGVRGIRLREDDEVIGMEVLEDDEK------ 387

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                          +L V+EKG+GK+T
Sbjct: 388 -----------------------------------------------VLVVTEKGYGKQT 400

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
            +  + + NR G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +  
Sbjct: 401 PASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQ 458

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRE 899
             R+  GV +    +DE+V +V ++ +
Sbjct: 459 TGRSAMGVKLIRLDEDEKVATVAKVPK 485



 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 270 ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 327

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 328 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 384

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 385 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 438

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 439 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 497

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 498 ETLITQVPDESFEDAPGSDIEE 519


>gi|256376407|ref|YP_003100067.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
 gi|255920710|gb|ACU36221.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
          Length = 1143

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 245/766 (31%), Positives = 354/766 (46%), Gaps = 56/766 (7%)

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
            +    MGKYHPHG+ AIYDA+ R+AQD+SL   LI+G GNFGS D D PAA RYTE R+ 
Sbjct: 401  VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASRYTEARMS 459

Query: 137  KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             AA  L+ +L +DTV+FRPNYDGS  EP VL A +PN+LVNG  GIAVGMATN+  HNLG
Sbjct: 460  GAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLG 519

Query: 197  EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            EVV     ++ +PD DL+ LME I GPD PTG ++LG   ++ AY TGRG + +R     
Sbjct: 520  EVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLLGLDEVRKAYETGRGVVRMRATVTT 579

Query: 257  EKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDRQG-YRVVI 312
                G   R+ I VTE+PY V    ++EKI + V + KR+  IAD++D +DR+   R+VI
Sbjct: 580  GPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLVI 639

Query: 313  ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            E K G +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+A R EVV RR
Sbjct: 640  ECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLAHRYEVVTRR 699

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            T++   K  DR H++ GL  A+ ++D+V+++IR S N + A+  L+              
Sbjct: 700  TRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVS------------- 746

Query: 433  LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         T  LSE Q   IL+  L RLT     ++  E   L  EI E   IL 
Sbjct: 747  -------------TFALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILD 793

Query: 493  SRSRLLGIIKQELLSVKDELDTPRRTRIVE-------GLLDMEDEDCIVREDMVVTVSHL 545
                L  ++  EL  V  +L   RRT +++                 +  +   V +S  
Sbjct: 794  DDKVLRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSAT 853

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            G V R       A     +GR        D V      +    VL  +S G  +K  V  
Sbjct: 854  GLVARTAAESEEA----VEGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLP 909

Query: 606  LP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            LP      G+   + G  +  ++ L  GER+  I P  E     ++  +   TK G V+ 
Sbjct: 910  LPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGE----TDSPGLALGTKQGVVKV 965

Query: 660  NKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAG 718
                    +       + L + DE++  +     +  ++  +     +R+  S +R    
Sbjct: 966  CAPEW--PVRSDEFEVIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYAASLVRPQGL 1023

Query: 719  RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            R   G+ GI+L     V+    V   DA++ E +       + +                
Sbjct: 1024 RGG-GMAGITLPGEASVVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFDLYPAKGRATGG 1082

Query: 779  SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                  +  E    L         V+E G        D R      
Sbjct: 1083 VRAHRFLKGEDGLVLAWVGARPAAVTESGAAVELPEIDPRRDGSGA 1128



 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 45/70 (64%)

Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           +   S+T E+++SYL YA +VI  RA+PD RDGLKPVHRRILF M +        YVK 
Sbjct: 22 KVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKS 81

Query: 75 ARISGEVMGK 84
          +R+ G+   +
Sbjct: 82 SRVVGDCFVR 91



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 133/414 (32%), Gaps = 55/414 (13%)

Query: 497  LLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L+  + + L+ +   +   RR+   +   +  +        +   +  + L  + R    
Sbjct: 713  LVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFALSETQAAYILDTPLRRLTRFDSV 772

Query: 555  VYRAQRRGGKGRSGV--VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                ++   +G       + D+D V    + +          LG V K+          +
Sbjct: 773  ELEGEQERLRGEIAELSTILDDDKVLRRVVSN---------ELGKVAKDLSAE-----RR 818

Query: 613  ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                    +L  +  E +             ++   V  +  G V R        +   G
Sbjct: 819  ------TTLLDGDLKE-VLAASRTSGPLEVADDPCQVVLSATGLVARTAAESEEAV--EG 869

Query: 673  KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-----SVGVR-- 725
            +        D + +    T    +LL T  G+  +  +  + V          S GV   
Sbjct: 870  RKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPVR 929

Query: 726  -GISLAKGDQVISMAIVLHADADY---DERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
              + L  G++V+ +A +   D+       +   +K  + +  + S + E I     D  V
Sbjct: 930  ELVGLEAGERVVGIAPLGETDSPGLALGTKQGVVKVCAPEWPVRSDEFEVIGLKAGDEVV 989

Query: 782  EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGA 840
                     Q L   ++ ++ VS +    R ++   R    R G     T   +     +
Sbjct: 990  -------GAQWLADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPGE----AS 1038

Query: 841  LVAVFPVNDND----QIILVSDKGTLIR-VPVNEIRIASRATKGVVIFSTAKDE 889
            +V    V  +D    + ++V+  G  ++  P +      RAT GV      K E
Sbjct: 1039 VVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFDLYPAKGRATGGVRAHRFLKGE 1092


>gi|160933743|ref|ZP_02081131.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
 gi|156867620|gb|EDO60992.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
          Length = 759

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 218/768 (28%), Positives = 366/768 (47%), Gaps = 54/768 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    I   ++ +Y+ YA++VIL RA+P++ DG KP HR++L+ M +MG+  N    K 
Sbjct: 38  SVVEQEIDHTLETNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLL-NSGRTKS 95

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G+ M K +PHG  AIYD + R+++ + +L    ++ +GNFG         AA RYT
Sbjct: 96  ANIVGQTM-KLNPHGEGAIYDTMVRLSRGYEALLHPFVDSKGNFGKFYSRDMAWAASRYT 154

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   A  L  D+ KDTVDF  NYD + +EP +L A +P VLVN   GIAVGMA++I 
Sbjct: 155 EAKLDAIAQELFRDIDKDTVDFVDNYDNTMKEPSLLPATFPTVLVNANTGIAVGMASSIC 214

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
             NL EV +  + +I +PD     +M  +  PDFP G  +I  R  +K  YATGRG I +
Sbjct: 215 PFNLKEVCETTIGLIRDPDF---DVMSTLLAPDFPGGGQIICDRNALKQVYATGRGGIKV 271

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     ++++     I VT IP      A++EKI ELV++ ++ +IAD+RDE+   G ++
Sbjct: 272 RARYSYDQSAN---CIDVTSIPPTTTCEAIIEKIIELVKQGKLKEIADIRDETGLDGLKI 328

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKR    + ++ +L+R T L+  FS N   L    P    +  +L  ++AFR E V 
Sbjct: 329 TIDLKRSVDPEKLMLKLFRMTPLEDTFSCNFNVLIAGVPRVLGIRELLGEWIAFRIECVR 388

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K +D+ H+L GL   + ++D+ VRI+R +         LM            
Sbjct: 389 RRTYFDLQKKKDKLHLLKGLKRILLDIDKAVRIVRETEEESEVVPNLMI----------- 437

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q   + E++L  L          E   L  EI E   +
Sbjct: 438 ---------------GFGIDEIQAEFVAEIKLRHLNREYILKRTQETEQLETEIAELQAV 482

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           + S+S++ GII  EL  V  +   PR++ +V    + + E ED I    + +  +  GY 
Sbjct: 483 MDSKSKVKGIIVSELNDVIKKYGRPRKSMLVYPGEIQEYEPEDDIPDYPVTLFFTKEGYF 542

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++     R             +++ED +      + +T +LFF+    VYK +      
Sbjct: 543 KKITPQSLRMSGE-------QKLKEEDSIVQTVEATNNTELLFFTDRCQVYKTRASEFAD 595

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                 G  +   L  ++GE    ++   + +       ++F  ++G + +  L  +   
Sbjct: 596 TKASVLGDFVAAKLGFDEGESAVAMIVTTDYKG-----CLLFFFENGKLAKVPLDSYATK 650

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
               ++A     +  +  V    ++ + LLT+  G+ +     A+   A RN+ GV  ++
Sbjct: 651 TNRKRLANAYSEKSPLCRVYHIQEDQEFLLTSSSGRMLLVHTGAVAEKATRNTQGVAVMT 710

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             KG +++++      D          K + A   + + +  +   +K
Sbjct: 711 QRKGHRLLNVE-PFKEDMLKKPARYRTKSLPAMGSMPAPEETQGEQMK 757



 Score = 44.9 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 19/207 (9%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             TK G   +    ++R+   +         L + D ++    V   +            
Sbjct: 535 FFTKEGYFKKITPQSLRMSGEQ--------KLKEEDSIV--QTVEATNNTELLFFTDRCQ 584

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSS 814
           +   R     DT+        ++  G    E    + +   +   +L   E G   +   
Sbjct: 585 VYKTRASEFADTKASVLGDFVAAKLGFDEGESAVAMIVTTDYKGCLLFFFENGKLAKVPL 644

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-A 873
             +     + K  R    +  +E   L  V+ + ++ + +L S  G ++ V    +   A
Sbjct: 645 DSY-----ATKTNRKRLANAYSEKSPLCRVYHIQEDQEFLLTSSSGRMLLVHTGAVAEKA 699

Query: 874 SRATKGVVIFSTAKDERVVSVERIRES 900
           +R T+GV + +  K  R+++VE  +E 
Sbjct: 700 TRNTQGVAVMTQRKGHRLLNVEPFKED 726


>gi|167772152|ref|ZP_02444205.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
 gi|167665950|gb|EDS10080.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
          Length = 745

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 208/726 (28%), Positives = 348/726 (47%), Gaps = 53/726 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    I   ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +MG+    +  K A
Sbjct: 26  LIEQPIVSTLEENYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLTGART-KSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGDP--PAAERYTE 132
            + G  M K +PHG+ AIY+ L R+++   +L    ++ +GNFG         AA RYTE
Sbjct: 84  NVVGATM-KLNPHGDQAIYETLVRLSRGCEALLHPYVDSKGNFGKAYSRDMAYAASRYTE 142

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   A+ L  D+ +DTVD   NYD + +EP +    +P+VLVN   GIAVGMA++I  
Sbjct: 143 VKLDPIANELFRDIDEDTVDMVDNYDNTMKEPTLFPVTFPSVLVNSNIGIAVGMASSICP 202

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
            NL EV +  +AV+ NP+     L+E +  PDFP G  I+     ++  Y TGRG I +R
Sbjct: 203 FNLAEVCETTIAVLKNPE---HDLLETLHAPDFPGGGYIVYDEQALRRIYDTGRGGIRVR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                ++ +     I VTEIP      A+++K+ +LV+  +I +IAD+RDE+D  G ++ 
Sbjct: 260 ARYTYDRANN---CIDVTEIPPTATVEAIMDKVVDLVKAGKIREIADMRDETDLNGLKLT 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKRG   D ++ +L++ T L+  FS N   L G  P    +  +++ + AFR E V R
Sbjct: 317 FDLKRGVDPDRLMQRLFKLTPLEDSFSCNFNVLIGGMPRVCGVRTLIEEWAAFRSECVRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R    LNK +++ H+L GL+  + ++D+ VRI+R +         LM             
Sbjct: 377 RVFRQLNKKKEKLHLLEGLSRILLDIDKAVRIVRETQEEREVVPNLMI------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            + EVQ   + E+RL +L          E+  L  +I E   IL
Sbjct: 425 --------------GFGIDEVQAEYVAEIRLRQLNREHILKRTEEIGQLRDDIAEMESIL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
             R ++  II  EL +V  +   PRR+ +       D   E+      + +  +  GY K
Sbjct: 471 EHREKIRAIIISELENVGKKYAKPRRSLLYYPTEGEDEAGEEPAPDYAVHLFFTREGYFK 530

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++     R             +++ D VT     + ++ +LFF+  G VYK K       
Sbjct: 531 KITPQSLRMSGE-------HKLKEGDTVTQAVEATNNSDLLFFTDRGQVYKAKASDFDDT 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G  +   L +++GE    +    +        Y++F  ++G   +  L+ +    
Sbjct: 584 KASVMGDYIPARLGMDEGESAVYMAVTADYAG-----YMLFVFQNGKAAKVDLAGYATKT 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              K+     +   +  +    Q+ + LLT+  G+ +     A+ V   R++ GV  ++L
Sbjct: 639 NRKKLVGAYSTASPLAGIFQLAQDAEYLLTSSAGRMLIVHTGAVAVKTTRSTQGVAVMTL 698

Query: 730 AKGDQV 735
            K + V
Sbjct: 699 KKNNFV 704



 Score = 45.7 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 27/239 (11%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R   +    +  DE    E        L  T+ G   +    ++R+             L
Sbjct: 495 RRSLLYYPTEGEDE-AGEEPAPDYAVHLFFTREGYFKKITPQSLRMSGEH--------KL 545

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD V           +  + + +       +   S   +   S+  D        +E 
Sbjct: 546 KEGDTVTQAV----EATNNSDLLFFTDRGQVYKAKASDFDDTKASVMGDYIPARLGMDEG 601

Query: 790 CQELKLK-----EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
              + +        ++L V + G   +     +       K + A   +       L  +
Sbjct: 602 ESAVYMAVTADYAGYMLFVFQNGKAAKVDLAGYATKTNRKKLVGAYSTAS-----PLAGI 656

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEI 902
           F +  + + +L S  G ++ V    + +  +R+T+GV + +  K+  V   ER+R  E 
Sbjct: 657 FQLAQDAEYLLTSSAGRMLIVHTGAVAVKTTRSTQGVAVMTLKKNNFV---ERVRPFEE 712


>gi|256370589|ref|YP_003108414.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009381|gb|ACU52741.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 519

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 211/507 (41%), Positives = 324/507 (63%), Gaps = 29/507 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S+++ +E++ SY+ Y+++VI+ RA+PD +DGLKPV RR+L+GM + G    K Y K
Sbjct: 2   EKIISINLEEEIKASYIDYSMSVIVSRALPDGKDGLKPVQRRVLYGMYEQGAF--KNYRK 59

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++++Y+A+ RMAQ WSLR  LI+GQGNFGS+D DPPAA RYTE 
Sbjct: 60  SARIVGDVLGKYHPHGDSSVYEAIVRMAQSWSLRYPLIDGQGNFGSIDNDPPAAMRYTEI 119

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +LQK +  +L DL KDTVD + N+D S +EP+VL    PN+L+NG  GIAVG+ATN+P H
Sbjct: 120 KLQKVSEEMLFDLKKDTVDIKLNFDSSCKEPIVLPTVIPNLLINGSSGIAVGIATNMPPH 179

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ E ++   + I+N DI ++ LM+ I  PDFPTG +I G  G+K A+ TGRG I++R  
Sbjct: 180 NIVESINAICSYIENTDISIEELMKDIIAPDFPTGGIIYGYEGVKKAFLTGRGKILLRSK 239

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              EK  G    +++ EIPYQ+ K  +++K  +L++E+++  I+ +RDESDR G R+V  
Sbjct: 240 VFFEKI-GGCYCLIIKEIPYQIRKEDLIKKTLKLIKEEKLEGISKIRDESDRTGMRIVFY 298

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  +  ++L  +++YT L++ FSVN +AL   KP +  L  I+K FV  R EV++RR+
Sbjct: 299 LKKNVNKHLLLKNIFKYTPLETTFSVNNIALVNGKPVQLNLKDIIKHFVNHRHEVLIRRS 358

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L  A+++AH++ G  + + N++ V+ +I+ S     A+++L+ +             
Sbjct: 359 KFDLKNAKEKAHIIKGFYLVLDNIETVIELIKSSKEKNHAKKKLLIK------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL L+L  LT L  + I+ +   L  +I    +I + 
Sbjct: 406 -------------FNLSEKQVKAILNLKLNSLTKLENEKIKKDYLKLKKDISYYTNIKTD 452

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI 520
                 IIK+EL  +K++    RRT+I
Sbjct: 453 IFFQKKIIKKELKQIKEKYGDLRRTQI 479


>gi|309806046|ref|ZP_07700069.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167565|gb|EFO69721.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 487

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 208/506 (41%), Positives = 308/506 (60%), Gaps = 26/506 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLMNN------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 415 -------------------YSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELD 513
           LDI+++++RL  +I +E   VK  LD
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKSLD 481


>gi|258611537|ref|ZP_05711543.1| parC [Listeria monocytogenes FSL N3-165]
 gi|258601050|gb|EEW14375.1| parC [Listeria monocytogenes FSL N3-165]
          Length = 470

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 208/493 (42%), Positives = 313/493 (63%), Gaps = 26/493 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +           
Sbjct: 364 RSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     ++++E  SL  +I     IL
Sbjct: 413 ---------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457

Query: 492 SSRSRLLGIIKQE 504
              + L+ ++K+ 
Sbjct: 458 GDEAELIAVLKEN 470


>gi|150390856|ref|YP_001320905.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
 gi|149950718|gb|ABR49246.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
          Length = 930

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 234/959 (24%), Positives = 431/959 (44%), Gaps = 120/959 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I D ++++Y+ YA++VI+ RA+P++ DG KP HR++L+ M QMG+   K   K
Sbjct: 6   NEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLL-TKGRSK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWS-LRLLLIEGQGNFGSVDGDPP--AAERY 130
            A I G  M K +PHG+ AIY+ + +M +    L    ++ +GNFG V       A+ RY
Sbjct: 64  SANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREASARY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+K    +  ++ K+ VDF  NYD + +EP +L   +PN+LV    GIAVGMA +I
Sbjct: 123 TEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P+ NL EV +  +A + + +I    L+E ++ PDF TG  +I     +K  Y TGRG+  
Sbjct: 183 PSFNLKEVCEATIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFK 239

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG     K       I + EIPY  +  A++E I ELV++ +I +I D+RDE+D+ G +
Sbjct: 240 VRGKYRYVKADN---AIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLK 296

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKRG + D ++ + +++T L+  F  N   L    P+   +  IL  ++AFR   +
Sbjct: 297 ITIDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILINGHPKVMGVKEILDHWIAFRLSCL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ ++ ++K  ++ ++L GL     N+ EVV +I+ +   +     LM++         
Sbjct: 357 KRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQ--------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+  Q   I E++L  L          E++++  E+K    
Sbjct: 408 -----------------FDLNLAQAEYIAEIKLRSLNQELILKKIKEISAIEKELKRLGM 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +L+  S+   II  +L  + +    PR+T I+    +  + +E  I   +M + +++ GY
Sbjct: 451 VLARESKQNEIIVNDLKRISEAYGIPRKTDIINENEVEVLSEEILIENYNMKLFLTNEGY 510

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++ L+  R+            ++D D++      +    VL FS+   VYK K + L 
Sbjct: 511 IKKISLASLRSS-------GDHKLKDNDYIVQEIDGTNRGEVLLFSNKETVYKIKAYELE 563

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                  G+ L N+L L+  E I  I+   + +      +++F  ++G   +  ++ +  
Sbjct: 564 DSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQG-----HMLFFFENGKGAKIPITSYET 618

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV--- 724
                ++A        ++ + +  ++ +++ T+ L + + F    +     RNS GV   
Sbjct: 619 KTNRKQLANAYSGDSPLVYISSIEEDLEMMATSNLNKTLIFNTEEMSPINSRNSKGVQVF 678

Query: 725 ---RGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITS 774
              +GISL K    D+V    ++     D + R+ +        + I      + EE   
Sbjct: 679 KCKKGISLKKIKPMDEVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPLTTLVEDEEQRL 738

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVS------------------------------ 804
            K+D  ++     E  + L    + IL  +                              
Sbjct: 739 KKDDYIIQEVEGAEEGELLLFSNKQILYKTKARELEEDEDKVASIGQRIRSILALDADED 798

Query: 805 ------------------EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                             E G G +     +       +   A      N    LV +  
Sbjct: 799 IIYITYTDNYKGHMLFFFENGKGAKIPLESYETKTNRKQLANAY-----NGESPLVYISN 853

Query: 847 VNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + ++ +++  S+   ++     +I   +SR +KGV I  + +   +  ++ + E +  D
Sbjct: 854 IQEDIELVATSNINKILIFNTAQINPKSSRDSKGVQILKSKEGSYLQEIKALDEFDYED 912


>gi|291542542|emb|CBL15652.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus bromii L2-63]
          Length = 747

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 205/763 (26%), Positives = 358/763 (46%), Gaps = 53/763 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    I   ++ +Y+ YA++VIL RAIP++ DG KP HR++L+ M +MG+  N    K 
Sbjct: 26  EVVEQPIVSTIRENYMPYAMSVILSRAIPEI-DGFKPSHRKLLYMMYKMGLL-NGGRTKS 83

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFGSVDGDP--PAAERYT 131
           A I G  M K +PHG++AIYD + R+++ + +L    ++ +GNFG         AA RYT
Sbjct: 84  ANIVGATM-KLNPHGDSAIYDTMVRLSRGYEALLHPYVDSKGNFGKFYSRDMAWAASRYT 142

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L    + L  D+ KDTVDF  NYD + +EP +L   +P+VLVN   GIAVGMA+NI 
Sbjct: 143 EAKLDAICNELFRDIDKDTVDFVDNYDNTMKEPSLLPVAFPSVLVNANTGIAVGMASNIC 202

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
           + NL E+ +   A+I +PD D+ + +     PDF  G  +I     I   Y TGRGSI +
Sbjct: 203 SFNLREICETTAALIRDPDHDIKSTL---PAPDFTGGCQIIYDENVINQVYETGRGSIKL 259

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R              I +  IP       ++EK+ +LV++ ++ +I+D+RDE+   G ++
Sbjct: 260 RAKY---VYDKSANCIDILSIPATTTCEVIIEKVIDLVKQGKVKEISDIRDETGIDGLKI 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRG  AD ++ +LYR+T+L+  ++ N   L    P    +  +L+ ++AFR E V 
Sbjct: 317 TIDLKRGVDADKLMTKLYRFTTLEDSYACNFNVLIAGVPRVLGVKALLEEWIAFRIECVR 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT +  NK  D+ H+L GL   + ++D+ V+I+R +         LM            
Sbjct: 377 RRTYFDRNKKADKLHLLRGLEKILLDIDKAVKIVRETDEESEVVPNLMI----------- 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q   + E++L  L          +L  L  EI E  +I
Sbjct: 426 ---------------GFGIDEIQAEYVAEIKLRHLNREYILKRTKDLEDLEKEIAELDEI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L S++R+  II +EL S+ ++   PR++ I+   +    E+   I    + +  +  GY 
Sbjct: 471 LKSKARIKTIIVKELKSIAEKYGQPRKSIIIYDDVARYEEETVEIPDYPVNLFFTKEGYF 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++     R             ++D D +      + +  +LFF+    VYK K      
Sbjct: 531 KKITPQSLRMSGE-------QKLKDGDEIIQELEFTNNCDLLFFTDKCQVYKAKADDFAQ 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                 G  +   L  ++GE    ++   + +       ++FA ++G   +  L  +   
Sbjct: 584 TKASVLGDYVAAKLGFDEGENAVKMVVTKDYKG-----MLLFAFENGKAAKVPLESYATK 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
               K+      +  ++ +    ++ ++L     G  +     A+ +   R++ GV  + 
Sbjct: 639 TNRKKLTGAYSDKSPLVGLLYMPEDEEVLFKASSGNMLLVHTGALALKTTRSTQGVAVLK 698

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             KG ++ S+           +R       +     ++ D+++
Sbjct: 699 PKKGHRLFSIERYKDGTFTNPKRYRTGSLPARGALPVNDDSKD 741



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             TK G   +    ++R+   +         L  GD++I  +    + D  +    C + 
Sbjct: 523 FFTKEGYFKKITPQSLRMSGEQ--------KLKDGDEIIQELEFTNNCDLLFFTDKCQVY 574

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A     +  +     +      +   +  +    K  +  +L   E G   +     
Sbjct: 575 KAKADDFAQTKASVLGDYVAAKLGFDEGENAVKMVVTKDYKGMLLFAFENGKAAKVPLES 634

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASR 875
           +       K   A      ++   LV +  + ++++++  +  G ++ V    + +  +R
Sbjct: 635 YATKTNRKKLTGAY-----SDKSPLVGLLYMPEDEEVLFKASSGNMLLVHTGALALKTTR 689

Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899
           +T+GV +    K  R+ S+ER ++
Sbjct: 690 STQGVAVLKPKKGHRLFSIERYKD 713


>gi|225353986|gb|ACN88536.1| DNA gyrase subunit A [Arcobacter sp. CL-S1]
          Length = 470

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 226/497 (45%), Positives = 324/497 (65%), Gaps = 27/497 (5%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           +IL+ M  + +     Y K ARI G+V+GKYHPHG++++YDAL R+AQ++S+R  L++GQ
Sbjct: 1   KILYAMHDLNMTARSPYKKSARIVGDVIGKYHPHGDSSVYDALVRLAQNFSMRAPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGSVDGD  AA RYTE R+ K +  +L DL KDTV+F  NYD + +EP VL  R P +
Sbjct: 61  GNFGSVDGDNAAAMRYTEARMTKISEEILKDLDKDTVNFVQNYDDTLKEPAVLPTRVPTL 120

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IP HNL E+++  +  IDN +   + LM+ I+GPDFPTG  I GR
Sbjct: 121 LLNGSEGIAVGMATKIPPHNLKELLEAVLYTIDNQEATAEDLMQFIQGPDFPTGGTIFGR 180

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI +AY TGRG + IR   HIE T G +E IV+ E+PYQVNK+ ++E+IA L +EK + 
Sbjct: 181 RGIIDAYKTGRGRVKIRAKHHIE-TKGKKEVIVLDELPYQVNKSRLIEQIAILAKEKNVE 239

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+++RDESDR+G RVVIELK+ A ++++LN LY+ T +++ F + ++A++  +P+ F L
Sbjct: 240 GISEVRDESDREGIRVVIELKKDAMSEIVLNNLYKSTPMETTFGIILLAVHNKEPKVFNL 299

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++ R+ V++RRT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+
Sbjct: 300 PELLRLFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAK 359

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +R                            LS +Q++AIL++RL RLTGL RD + 
Sbjct: 360 EKLQER--------------------------FELSLIQSQAILDMRLGRLTGLQRDKLE 393

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            +   +   I E   IL S  +L  IIK+E+  +K++    RR  I +   +++ ED I 
Sbjct: 394 ADYQDILRLIHELEAILKSEEKLNEIIKEEIQEIKEKYSDERRREIEDSYDEIDIEDLIP 453

Query: 535 REDMVVTVSHLGYVKRV 551
            E M V ++  GYVKRV
Sbjct: 454 NEPMAVNITRNGYVKRV 470


>gi|227873175|ref|ZP_03991466.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841006|gb|EEJ51345.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 459

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 206/455 (45%), Positives = 295/455 (64%), Gaps = 31/455 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V +   M+N+Y+ YA++VI+ RAIPD+RDGLKPV RR+L+ +  +GV  +KK  K
Sbjct: 7   DKVQDVDLKKTMENAYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYALQSLGVTPDKKTKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA I GE MGKYHPHG+++IY +L  M Q WS+R +LI+ QGNFGS DGD PAA RYTE 
Sbjct: 67  CATIVGETMGKYHPHGDSSIYGSLVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           ++ + A  +L  + K+TVDF PN+   ++EPVVL +R+PN+LVNG  GIAVGM+TNIP H
Sbjct: 127 KMSRLAGEMLAGINKNTVDFMPNFSNEYEEPVVLPSRFPNLLVNGATGIAVGMSTNIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV+ G   +IDN       +++ L+ II+GPDFPTGA ILG+ GI+ AY TGRG I 
Sbjct: 187 NLREVIKGVDCIIDNKIAGRKTEIEELLPIIQGPDFPTGATILGKRGIEEAYRTGRGKIK 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY- 308
           +R +  IE     + +I+V E+PY V ++ ++EKIAELV++KRI  I  + D + +    
Sbjct: 247 MRAICEIEPMHNGKNRILVKELPYLVYRSRVIEKIAELVKDKRIDGITYIHDAAGKNSKA 306

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ IE ++  +  VILNQLY++T LQ  F V M+ +   +P+   L+ IL+ F+A + +V
Sbjct: 307 KIAIECRKDVNPHVILNQLYKHTQLQETFGVIMLCIVRGEPKILNLLEILEEFLAHQIQV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L K  DRAH+L GL  A+ ++DE+V IIR + N E A++ L+ R        
Sbjct: 367 VTRRTQYDLQKCEDRAHILEGLLKALDHIDEIVAIIRAAKNVEEAKQNLITR-------- 418

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
                                +EVQ +AI+++RL 
Sbjct: 419 ------------------FAFTEVQAQAIVDMRLR 435


>gi|320120331|gb|EFE28486.2| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
          Length = 733

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 205/743 (27%), Positives = 361/743 (48%), Gaps = 53/743 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E    + +I D ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +  N    
Sbjct: 15  ETNKRTENIVDTLKQNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYRMNLL-NANRT 72

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDPP--AAER 129
           K A I G+ M K +PHG++AIY+ + ++++ + SL    I+ +GNFG         AA R
Sbjct: 73  KSANIVGQTM-KLNPHGDSAIYETMVKLSRGNESLLHPYIDSKGNFGKSTSRDMQFAAPR 131

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L      L  ++ K+TVDF  NYD + +EPV+L   +PN+L+    GIAVGMA++
Sbjct: 132 YTEAKLMPLCKELFGEIEKNTVDFVDNYDSTMKEPVLLPTTFPNILLKANKGIAVGMASS 191

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           IP+ NL E+ +  +A + + + +   + + I GPDFP+G  +L     +K+ Y TGRGS 
Sbjct: 192 IPSFNLSEICNYTIAYLKDINCN---MFDFILGPDFPSGGELLFDEEEMKSIYETGRGSF 248

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG           + I + EIPY      ++EKI +L+++  + +I D+RDE+D  G 
Sbjct: 249 KLRGKYRY---LKKEQLIEIYEIPYTTTVEVIIEKIIDLIKDGTLREITDIRDETDLNGL 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++ I++++ A  + ++ ++++YT+L+  FS N   L   KP+   +  I+  ++ FR + 
Sbjct: 306 KITIDVRKNADVESMMGKIFKYTTLEDSFSCNFNVLIDNKPKILGIKDIIFHWLNFRRQC 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT   +     R  +L GL   + ++D+ + IIR +         LM          
Sbjct: 366 IVRRTLNEMEDKSKRLFLLQGLEKIILDIDKAIAIIRNTEKEIDVLPNLMN--------- 416

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + E Q   ILE++L  L         +E+  L  EI +  
Sbjct: 417 -----------------AFAIEEKQAEYILEIKLRNLNKEYILKKISEIKELEEEITKLE 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLG 546
           +I  S+     +I  EL  +       R+T IV     +        ED  VT+  +  G
Sbjct: 460 EIYHSQKLQDKLIISELKKIIKTYGQERKTTIVSKKDVVVYSKENFTEDYAVTMFLTKDG 519

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++P    RA        S   ++D D +     ++     +  S+   +Y+ KV  L
Sbjct: 520 YLKKIPELSLRA-------YSEQKLKDNDSILQQIEMNNTDVFMLLSTNNVLYQVKVSDL 572

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L N L + + ERI  ++   E E      Y+V+  ++G V +   S + 
Sbjct: 573 KDTKASLLGLFLPNYLKMEENERIIQMIFPEEYEG-----YMVYFFENGKVAKINFSSYQ 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             +   K+     ++  ++      ++   ++ T   +C+    S+I     R+S GV+ 
Sbjct: 628 TKSFRKKLQNVYSTQSPLVDCFHIKKDETFVIFTDNYRCLSIDTSSIPEKISRSSQGVKV 687

Query: 727 ISLAKGDQVISMAIVLHADADYD 749
           I+L K  +V  + ++   D ++D
Sbjct: 688 INLNKNAKVERIELLESDDREWD 710



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 81/229 (35%), Gaps = 19/229 (8%)

Query: 678 LDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +D ++  +    E+    +  TK G   + P  ++R ++ +         L   D +
Sbjct: 492 VSKKDVVVYSKENFTEDYAVTMFLTKDGYLKKIPELSLRAYSEQ--------KLKDNDSI 543

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +    + + D         + +      L       +  L   + ++   +E   Q +  
Sbjct: 544 LQQIEMNNTDVFMLLSTNNVLYQVKVSDLKDTKAS-LLGLFLPNYLKMEENERIIQMIFP 602

Query: 796 KEQFILTV--SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +E     V   E G   + +   ++  +   K               LV  F +  ++  
Sbjct: 603 EEYEGYMVYFFENGKVAKINFSSYQTKSFRKKLQNVYST-----QSPLVDCFHIKKDETF 657

Query: 854 ILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++ +D    + +  + I    SR+++GV + +  K+ +V  +E +   +
Sbjct: 658 VIFTDNYRCLSIDTSSIPEKISRSSQGVKVINLNKNAKVERIELLESDD 706


>gi|325136790|gb|EGC59389.1| DNA gyrase, A subunit [Neisseria meningitidis M0579]
          Length = 517

 Score =  400 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/516 (31%), Positives = 260/516 (50%), Gaps = 26/516 (5%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG----------TM 447
           DE++++I+ SPN   A+ +L+ R W +S +++++         +  +G            
Sbjct: 1   DEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGY 60

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
           YLSE+Q  AIL + L  LTGL +++I     +L  +I + +DILS   R+  II+ EL  
Sbjct: 61  YLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEE 120

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +K      RR+ I     D+ DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+ 
Sbjct: 121 IKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQ 180

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
               +DEDF+  LF+ +TH  ++ F++LG  +  KV++LP G   +RG+ + N++ L +G
Sbjct: 181 AAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEG 240

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E+++ I+   E      + YV FAT  G V++ +LS F  +   G  A+ L   D ++  
Sbjct: 241 EKVSAILAVRE---FPEDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGA 297

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                 +DI+L + LG+ +RF              G      A  +  IS  I     AD
Sbjct: 298 AQTGGADDIMLFSNLGKAIRFNE-------YWEKSGNDEAEDADIETEISDGI-EDETAD 349

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +  +   KH        SG    +    +   V         +E  L+   +LT +  G
Sbjct: 350 SENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANG 406

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  G LIR  V
Sbjct: 407 YGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKV 464

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +IR   RA  GV + +  + E +VS+ER+ E E  
Sbjct: 465 EQIRETGRAAAGVKLINLDEGETLVSLERVAEDESE 500



 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 110/270 (40%), Gaps = 42/270 (15%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  V   +  G VK+V LS ++  R   +G   + +++ D++    
Sbjct: 241 EKVSAILAVREFPEDQYVFFATAQGLVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAA 298

Query: 582 IVSTHTSVLFFSSLGFVYKEKVW----------------RLPIGSPQAR---------GK 616
                  ++ FS+LG   +   +                 +  G              GK
Sbjct: 299 QTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGK 358

Query: 617 ALI----------NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             +            + L    +I +++ F   E+  + L V+ AT +G  +R  ++D+ 
Sbjct: 359 HGVRPSGRGSGGLRGMRLPADGKIVSLITFAP-ETEESGLQVLTATANGYGKRTPIADYS 417

Query: 667 QINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           + N+ G+  + +++ +    +++     + +D++L T  G  +R  +  IR   GR + G
Sbjct: 418 RKNKGGQGNIAINTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAG 476

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERIC 753
           V+ I+L +G+ ++S+  V   +++  +   
Sbjct: 477 VKLINLDEGETLVSLERVAEDESELSDASV 506


>gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 752

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 239/761 (31%), Positives = 384/761 (50%), Gaps = 69/761 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  IT   + ++    YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +     
Sbjct: 3   KNKNNITEEQLKNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLTSKSS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ G+V+GK+HPHG+ ++YDAL R+AQD+S +  LI GQGNFG++DGD  AA RY
Sbjct: 63  FKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L + + FLL D+G +TV+FR  YDG   EP VL A +PN+L NG  GIAVGMATNI
Sbjct: 123 TETKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIV 249
           P HNL E+    + + ++ D  +  L++I++GPDFPTG +  L +  +   Y TGRG   
Sbjct: 183 PPHNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGRGFFE 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +E  S  + Q+ +++IPYQVNK+ ++EKIA+L+  K+   I ++ DESD     
Sbjct: 243 LRAKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESDENIRV 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEV 368
           V+    R     V++N LY+ T L+  F +NM  LN   +P+  ++  IL +F+  R  +
Sbjct: 303 VIRPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKHRYII 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + +++K+ LNK   R  +L G  IA  NL+ +++IIR S NP   + EL+++        
Sbjct: 363 LEKKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNP---KAELVKK-------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                +E Q  AIL+++L  L  +   +I+ E + L  + K  +
Sbjct: 412 ------------------YRFTENQVNAILDMKLRSLRKIEEKEIKEENSKLLNKKKLLM 453

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE----GLLDMEDEDCIVREDMV 539
            +LSS+S     I +E+  +  +         R+T I +       ++++E       + 
Sbjct: 454 KLLSSKSLQKKEINKEMEDLILQFGNNSAYGLRKTVIEKFNRIESSELDEELKSTD-PIT 512

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF--VTDLFI-VSTHTSVLFFSSLG 596
             +   G++K              K    V   + DF     L++        +F SS G
Sbjct: 513 AILLKTGFLK-------------AKIGYSVCKVNADFSENEHLYVNGRKSDKFIFLSSFG 559

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      L  GS   +GK   +  SL + E I       +     NN  ++  + +G 
Sbjct: 560 KSYTLDGENLVFGS--QKGKPFSSYFSLKENEEIV------DSFLYKNNEKILLCSSNGY 611

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRV 715
                  + I   +SGK    +   D + S     ++   I L TK  +  R  + +++ 
Sbjct: 612 GFFINSDNLISNKKSGKKVFNIKKNDFLHSSVQIHKDQKYIFLLTKNKKENRASVISMKD 671

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +   GV GI L KG +V S+  +    A ++    Y  
Sbjct: 672 IPTQE-KGV-GIILFKGKKV-SLFALSTVSAKFEMLDNYTT 709


>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 540

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 214/416 (51%), Positives = 290/416 (69%), Gaps = 4/416 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            S+   +  +    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+ 
Sbjct: 100 DSNGGRDARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 159

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K + KCAR+ GEV+GK+HPHG++A+YDAL RMAQD+SLR  LI+G GNFGS+D DPPA
Sbjct: 160 SRKPFKKCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPA 219

Query: 127 AERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           A RYTECRL+      LL DL  DTVDF PN+D S +EP +L AR P +L+NG  GIAVG
Sbjct: 220 AMRYTECRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVG 279

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGR
Sbjct: 280 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGR 339

Query: 246 GSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G I++RG + +E   +   R  +++ EIPYQ NKA+++EKIAELV  K +  ++D+RDES
Sbjct: 340 GRIIVRGKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDES 399

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+VIE+KRG+   ++LN LYR T LQS FS NMV +   +P++  L  +L+A   
Sbjct: 400 DRSGMRIVIEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDLLQASY- 458

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           FR  VV RR ++ L +A++R H++ G+ I + NLD V+RII+ + +   A   L  
Sbjct: 459 FRCSVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKEASSNAAASAGLRT 514


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 189/525 (36%), Positives = 291/525 (55%), Gaps = 39/525 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 270 HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 329

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYT
Sbjct: 330 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYT 389

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 390 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 449

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 450 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 509

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 510 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 564

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 565 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 624

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 625 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 670

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 671 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 715

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
            + L +   L  +I  EL     +    RR+ IV     ++ ++ 
Sbjct: 716 REQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQ 760


>gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
 gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
          Length = 424

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 232/393 (59%), Positives = 293/393 (74%), Gaps = 7/393 (1%)

Query: 1   MTEHIISSDEEEEKGITS-------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++     + + EK           +SI  EM+ +YL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPDLPETDAEKTPERPIHAGPTISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M + G   +K + K AR  G+ MGKYHPHG+++IYDALARMAQD+S+ L LIEG
Sbjct: 61  RRILFAMNESGNTHDKAFRKSARAVGDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE RL K A F+L D+ KDTVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSPAAMRYTEARLAKVASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+I NPD+  + LM+ +  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATIALIKNPDLTSEDLMQYVPAPDFPTGGMILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGSI++R  SH+E+   DR  I+V ++PYQVNK+ M++KIAE VR+KRI
Sbjct: 241 RSGARKAYLEGRGSILMRARSHVEEIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+ADV+LNQLYR++ +Q  F  NM+ALNG +PE  T
Sbjct: 301 EGIAHIQDESDRNGVRVVIELKRDATADVVLNQLYRFSPMQISFGANMLALNGGRPETLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L   L+ F+ FREEVV RRT + L KAR+RA +
Sbjct: 361 LYRFLQCFIDFREEVVARRTAFELRKARERAAI 393


>gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
 gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 195/500 (39%), Positives = 283/500 (56%), Gaps = 39/500 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   DLTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT
Sbjct: 123 RYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGS 247
           +IP HN+ E+    +A+ID P   LD L+E ++GPDFPT A +I  R  I+  Y  GRGS
Sbjct: 183 DIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGS 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD + 
Sbjct: 243 VRMRALWKKEDGS-----AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHEN 297

Query: 308 YR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
               V++        D ++N L+  T L+  + +NM  +   ++P    L+ IL  ++ F
Sbjct: 298 PTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVF 357

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+             
Sbjct: 358 RRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPL----------- 406

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   +SE Q  AILEL+L  L  L    IR E + L  E 
Sbjct: 407 ------------------LMQHFSISETQAEAILELKLRHLAKLEEVKIRGEQDELAKER 448

Query: 485 KECLDILSSRSRLLGIIKQE 504
            +   +L+S  +L  +IK+E
Sbjct: 449 DQLQALLASERKLNTLIKKE 468


>gi|325678874|ref|ZP_08158472.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
 gi|324109378|gb|EGC03596.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
          Length = 747

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 212/763 (27%), Positives = 355/763 (46%), Gaps = 54/763 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    IT  ++ +Y+ YA++VI+ RA P++ DG KP HR++L+ M  MG+   K   KCA
Sbjct: 27  VAEQKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYTE 132
            I G  M K +PHG+ AIY+ L R+++ + +L    ++ +GNFG         AA RYTE
Sbjct: 85  NIVGATM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+     L  D+ K+TVDF PNYD +  EP +  A +P +LVN   GI V MA+ +  
Sbjct: 144 AKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASAVCP 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
            NL EV +  +A++ +PD +    ++ ++GPDFP G  +L     +   Y TGRGS+ +R
Sbjct: 204 FNLTEVCETAIALMKDPDANA---LDTLKGPDFPGGGYLLYDEAELDKIYRTGRGSVKLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                   + D   I VTEIP      A++EKI  LV+  +I +I+ +RDE+D  G ++ 
Sbjct: 261 AKYRY---NSDERCIEVTEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIG 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++K+G   + ++ +LY+ T LQ  +S N   L    P+   +  IL  +  FR + V R
Sbjct: 318 IDIKKGVDPEKLMQKLYKLTPLQDTYSCNFNILVHGYPKVMGVYEILDEWTKFRLDCVKR 377

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K RDR H+L GL   + ++D+ ++IIR +         LM             
Sbjct: 378 RVNYDLKKKRDRLHLLKGLGKILLDIDKAIKIIRETEEESEVVPNLMI------------ 425

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            + EVQ   + E++L  L          +   L  EI E  +IL
Sbjct: 426 --------------GFGIDEVQAEYVAEIKLRHLNREYILKRTADTERLEKEIAELEEIL 471

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +L  +I  EL  V       R+T+      + ++E+E+ I      + +S  GY K
Sbjct: 472 GSEKKLKQVIISELNDVIKNYGQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +  +   R         S   +++ D +      S    +LFFS    VYK K  R    
Sbjct: 532 KCTMQSLRM-------ASDQKLKEGDRMMAEIESSNRAELLFFSDKAAVYKAKASRFGNT 584

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G  +  +L  + GE  + ++     E+   + Y++F   +G   +  L+ +    
Sbjct: 585 KASDLGDYIPAVLGFDSGEGFSAMV-----ETMDYSGYLLFVYDNGKAAKVPLNAYETKT 639

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              K++     +  ++++        ++L T  G+ + F  + +     RN+ GV+ ++L
Sbjct: 640 NRKKLSNAYCEKAGLVTILKLNDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTL 699

Query: 730 -AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            AK  ++    IV   +A+   +        A       +  +
Sbjct: 700 KAKNAKIEKAYIVSDEEAETLSKFRSKTIPVAGSLAKDLEDPD 742



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 24/219 (10%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
             L  ++ G   +  + ++R+ + +         L +GD++  MA +  ++         
Sbjct: 520 CKLFISESGYFKKCTMQSLRMASDQ--------KLKEGDRM--MAEIESSNRAELLFFSD 569

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK---EQFILTVSEKGFGKR 811
              +   +    G+T+         +V G  S E    +        ++L V + G   +
Sbjct: 570 KAAVYKAKASRFGNTKASDLGDYIPAVLGFDSGEGFSAMVETMDYSGYLLFVYDNGKAAK 629

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI- 870
                +       K   A       E   LV +  +NDN Q++L +  G  +      + 
Sbjct: 630 VPLNAYETKTNRKKLSNAY-----CEKAGLVTILKLNDNAQVMLRTTNGRALLFDTALLL 684

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              +R T+GV + +           +I ++ IV + E+ 
Sbjct: 685 PKTTRNTQGVQVMTLKAKN-----AKIEKAYIVSDEEAE 718


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 188/525 (35%), Positives = 290/525 (55%), Gaps = 39/525 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 270 HHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 329

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA R T
Sbjct: 330 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRXT 389

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 390 EAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIP 449

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVI 250
            HNL EVV G +A+I NP    + L E I  PD PT A +I     +     TGRGS  +
Sbjct: 450 PHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRM 509

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR- 309
           R V  IE     + +IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +    
Sbjct: 510 RAVYTIE-----KNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTR 564

Query: 310 -VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
            V++       A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++
Sbjct: 565 LVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKK 624

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                
Sbjct: 625 TVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPV-------------- 670

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q  AILEL+L  L  L   +IR+E + L  +    
Sbjct: 671 ---------------LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAII 715

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
            + L +   L  +I  EL     +    RR+ IV     ++ ++ 
Sbjct: 716 REQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQ 760


>gi|2181179|emb|CAB09528.1| gyrase alpha subunit [Acholeplasma laidlawii]
 gi|2204066|dbj|BAA20473.1| gyrase A subunit [Acholeplasma laidlawii]
          Length = 387

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 198/387 (51%), Positives = 276/387 (71%), Gaps = 5/387 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+     ++    I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM
Sbjct: 1   MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSV
Sbjct: 57  HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A +DNPDI +  LM+ ++GPDFPTG  ILG TG++ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R    I   + +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLR
Sbjct: 237 YETGKGIIAVRAQHEI-VETKNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  
Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++A + E++ RRT++ L K +  A++ 
Sbjct: 356 YIAHQIEIITRRTQFDLEKLKLDAYIR 382


>gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
           subunit [uncultured bacterium HF0010_16H03]
          Length = 701

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 217/757 (28%), Positives = 395/757 (52%), Gaps = 71/757 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS
Sbjct: 1   MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D     AA RYTE +L K +  L+ +L   TVD++PN+DGS  EPV+  ++ P++L+NG
Sbjct: 61  QDDPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMAT+IP+HN+ EV+D  + +++NP  +++ L++II+GPDF   A I+  +  +
Sbjct: 121 TSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEEL 180

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRG    +     E     +  IV+  +PYQ + + +LE+IA+ + +K+I  + 
Sbjct: 181 EEIYKSGRGGFKAQAHWVKE-----KNNIVINALPYQASGSKILEQIADQMLKKKIPMVV 235

Query: 298 DLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DL DE D  +  R+VI LK    +AD ++N L+  T LQ  + VNM  ++    P+ F+L
Sbjct: 236 DLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQGGPKVFSL 295

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + ++K ++ FR+  V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+   
Sbjct: 296 VEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK-- 353

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS++Q  AILE++L +L  L +  + 
Sbjct: 354 ---------------------------DITKAFKLSDIQANAILEIKLRQLAKLEQIKLE 386

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDC 532
            E ++L  E  E   IL+S++RL  +IK+ELL +KD     R++ I +        +ED 
Sbjct: 387 QERDALLEEQNEIEKILNSKTRLKTLIKKELLEIKDGFGEDRKSPIRQSSDAKVFSEEDT 446

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +V E + V +S  G++        R+ +      S +  R ED + D     ++   +F 
Sbjct: 447 LVTESITVVLSEAGWI--------RSAKGHEIDPSSLAYRGEDKLQDFCQGKSNQIAVFL 498

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFA 651
            S G  Y      LP  S +  G  +   +S + G + I+T++       +  + +++  
Sbjct: 499 DSNGKAYSLPSHSLP--SARGMGDPITGRVSADSGVKFISTVI------GNDIDKFMIMN 550

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPI 710
           T  G    ++ S+ +   +SG+  MKL ++ E+L V    +++  I   + +G+ + F I
Sbjct: 551 TA-GYGYISEFSNMVSNKKSGRAFMKLPNKAELLKVIKVREDHVYIAAVSNIGRLLIFKI 609

Query: 711 SAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             + V        +  I        ++ +S A ++   +           + + +R ++ 
Sbjct: 610 DELPVLGKGKGNKIINIPTPKFLAKEEYMSHAQLISLSSSL--------RIESGKRFLTL 661

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             +++ +  +  +  GN+  +  +++ L  + +   +
Sbjct: 662 KLKDLQNYISSRAKRGNMLPQGYRKVDLMVEEVDVTT 698


>gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 672

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/668 (30%), Positives = 315/668 (47%), Gaps = 70/668 (10%)

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGS
Sbjct: 1   AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
           F+EP  L +R P VL+NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I
Sbjct: 61  FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120

Query: 221 RGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
            GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   
Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180

Query: 280 MLEKIAELVREKRIVDIAD------------------LRDESDRQGYRVVIELKRGASAD 321
           +LE+I EL   K  +                      +RDES ++    ++   +  + D
Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240

Query: 322 --VILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               +N L  +TSL+S  ++N+V +    +P +  L+ IL  +V FR++ + RR ++ L 
Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR H+L G  I   N+DEV+RIIR S  P+ A                         
Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA------------------------- 335

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q   ILE+RL +L  L +  I  EL +L  E  +  D+L++ + + 
Sbjct: 336 ----LMSAFGLTERQADDILEIRLRQLARLEKIKIEKELEALRDEKAKLEDLLANDNAMK 391

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++ +E+ +   +    RRT I +      +   +      V VS  G+V        RA
Sbjct: 392 RLMIKEIEADAKQYGDDRRTLIQQEKRATFEAKVVDEPVT-VVVSQKGWV--------RA 442

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            +  G   +    +  D +   F   T   ++ + S G VY   V  LP G  +  G  +
Sbjct: 443 LKGHGLDPASFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGG--RGDGVPV 500

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            +++ L  G  +        D+       ++ A+ +G     K+ D +   ++GK  M +
Sbjct: 501 TSLIELESGSHLMHYYAAAADQP------LLLASSNGFGFIAKVGDMVSRVKAGKAFMTI 554

Query: 679 DSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           D+    +  +        +   +  G+ + F I  ++  +G    GV  ++L   + ++ 
Sbjct: 555 DAGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQ 613

Query: 738 MAIVLHAD 745
              +  A 
Sbjct: 614 ALAIDPAG 621


>gi|156181152|gb|ABU54855.1| GyrA [Bacillus licheniformis]
          Length = 341

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 201/341 (58%), Positives = 268/341 (78%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+A+ RMAQD++ R  L++G GNFGSVDGD  AA RYTE R+ K +  
Sbjct: 61  IGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG
Sbjct: 121 ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV  NPDI L  L+EII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS 
Sbjct: 181 VLAVSKNPDITLPELVEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+RGA+A+
Sbjct: 241 GKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRGANAN 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++
Sbjct: 301 VLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYL 341


>gi|89101302|ref|ZP_01174113.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89083983|gb|EAR63173.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 610

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 202/635 (31%), Positives = 329/635 (51%), Gaps = 45/635 (7%)

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D  +D LME+I+GPDFPTG  I G  GIK AY TG+G I+IRG S +E   G R+QIV+T
Sbjct: 1   DCTVDELMEVIKGPDFPTGGTIQGAEGIKKAYETGKGKIIIRGKSEVEDIRGGRQQIVIT 60

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIP++VNKA +++KI EL  ++++  I+++RDE+DR G R+VIELK+ A A  +LN LY+
Sbjct: 61  EIPFEVNKANLVKKIDELKMDRKVEGISEVRDETDRTGLRIVIELKKDADAAGVLNYLYK 120

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            T LQ  ++ NMVA++   P+   L  +L A++  ++EVV RR++Y L KA+DR H++ G
Sbjct: 121 NTDLQIPYNFNMVAISNRHPKLLGLREMLDAYIGHQKEVVTRRSQYELKKAQDRQHIVEG 180

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L  A++ LDEV+  IR S +   A+  L+ +                             
Sbjct: 181 LMKALSILDEVIAAIRASKDKRDAKDNLISQ--------------------------FGF 214

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +E Q  AI+ L+L RLT      +R E   L  ++ E L IL S  +LL +IK++L  VK
Sbjct: 215 TEPQAEAIVSLQLYRLTNTDITALRAEAEELAQKVAELLSILQSEKKLLSVIKKDLKDVK 274

Query: 510 DELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                 RR+ I   + +++      I  ED++VTV++ GYVKR     + A      G  
Sbjct: 275 KRFADARRSVIEAEIEEIKINLEVLIASEDVIVTVTNEGYVKRTSQRSFAASNGQDFG-- 332

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              M+D D +     ++T   +L F+  G      V  LP    +  G+ + N++ +++ 
Sbjct: 333 ---MKDSDRLMSKLDMNTTDVLLVFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRT 389

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILS 686
           E I   +P  + E+     Y++F TK+G V++++L ++     S   +A+ L + D +  
Sbjct: 390 ESIIGAIPVKDFEAE---AYLMFITKNGMVKKSELKNYKAQRYSKPLVAVNLKNDDVVTD 446

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V     + D++L T +G  + FP   + V   R + GV+GI+L  GD V+S  +V +   
Sbjct: 447 VFLTDGKQDLMLATSMGYALWFPEEEVSVVGAR-AAGVKGINLKDGDYVVSGKLVSNV-- 503

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILT 802
             +E +       A +++   + E  +  K    +   +     + + +        I  
Sbjct: 504 -KEEAVVIATQRGAIKKMKLAEFERTSRAKRGLVMLRELKANPHRVVGMVLAKNHDKIFI 562

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            SEKG  ++ S+ D R ++R   G    D S   +
Sbjct: 563 ESEKGVIEQVSASDLRFNDRYSNGSFILDESDSGK 597



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 77/223 (34%), Gaps = 18/223 (8%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E+ I+  T  G   R    +        +   +   +   D+++S   +   D  
Sbjct: 298 VLIASEDVIVTVTNEGYVKRTSQRSF------AASNGQDFGMKDSDRLMSKLDMNTTDVL 351

Query: 747 ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                     Y+              + + +L      E  I     ++ +  E +++ +
Sbjct: 352 LVFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRTESIIGAIPVKDFEA-EAYLMFI 410

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ G  K++   +++   R  K + A ++   +    +  VF  +    ++L +  G  +
Sbjct: 411 TKNGMVKKSELKNYKAQ-RYSKPLVAVNLKNDD---VVTDVFLTDGKQDLMLATSMGYAL 466

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIV 903
             P  E+ +      GV   +    + VVS   V  ++E  +V
Sbjct: 467 WFPEEEVSVVGARAAGVKGINLKDGDYVVSGKLVSNVKEEAVV 509


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 215/746 (28%), Positives = 331/746 (44%), Gaps = 80/746 (10%)

Query: 20   SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
                  +  Y +Y + V+  RAIPD+RDG+KPVHRRIL+ M  + +  N K  K AR+ G
Sbjct: 685  PFETVFRELYRSYGLKVVGDRAIPDVRDGMKPVHRRILYAMEMLKLRSNTKTKKSARVVG 744

Query: 80   EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +V+GKYHPHG++A+Y A+ RMAQ W +R  LI+GQGNFGS+DGD  AA RYTE R+   A
Sbjct: 745  DVIGKYHPHGDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSIDGDSAAAMRYTEARMTPIA 804

Query: 140  HFLLD-DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG-IAVGMATNIPTHNLGE 197
              +L  DL      ++PNYD   +EP+VL A +P V++N   G  AVG  T IP+HNL E
Sbjct: 805  EAILSGDLKDGITMYQPNYDDQDKEPMVLPAPFPLVMMNSSTGNPAVGFKTEIPSHNLTE 864

Query: 198  VVDGCVAVIDNP--------DIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
            ++  C+A+              D   + + I  PDFP G +I      ++  YA G G +
Sbjct: 865  LLGACIALAKKRGRTGAMESPTDFRDVRKHITAPDFPGGGIIANTHEELEAMYAKGYGKM 924

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI------VDIADLRDE 302
            ++R   H+E       QIVVTEIPY + K+ +L ++   + +K I        I DLRDE
Sbjct: 925  LLRSKWHVETLPKGLWQIVVTEIPYGIEKSPLLIEMGARISDKTIAESRQLPMIDDLRDE 984

Query: 303  SDRQG--YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-------NGYKPE--- 350
            S  +     V+    R    + I+  L+  T+LQ        AL       NG +     
Sbjct: 985  SSAEDGIRIVLFPKSRNLDPEQIMLHLFSATNLQVTIQYATYALEKWHDTPNGERYRLPS 1044

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             F L  ++++F+ +R+E+V+ R K  L +   R H+L GL +A  N+ E+V II  +  P
Sbjct: 1045 LFPLDKMIRSFLDYRQELVMSRAKVRLAEITARLHILDGLLLAYPNIREIVEIILDNDEP 1104

Query: 411  ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                                                  L+E+QT AIL +RL++L  L +
Sbjct: 1105 RPI-----------------------------IMEKYSLTEIQTDAILAIRLSQLRKLEQ 1135

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---M 527
              ++ E + L  E      +L   +     I  EL     +    RRT +         M
Sbjct: 1136 MKLQGEHDRLSEEAAGLHQVLDDDAHRWKHITGELRDALKKFGDERRTIVDPDAPKSRPM 1195

Query: 528  EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              E  + RE +   +S  G++K +        R      S V  R+ D + D     T  
Sbjct: 1196 SREQIVSREPVTAILSKQGWLKGM--------RGSSIDVSSVRFRESDKLLDSAAGHTTD 1247

Query: 588  SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             ++     G  +      LP G  +  G+ +      +  E  T ++    D        
Sbjct: 1248 QLILIGRTGRAFSMLAADLPSG--RGNGEPVSKHFVFSINEAPTRMVMVKPDAE------ 1299

Query: 648  VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCV 706
             + AT  G+  R   SD +  N+ GK  +   +   +L +       +        G+  
Sbjct: 1300 YLVATTAGHAFRAMGSDMVSANKKGKAFINFPASSRLLCIREIEAAHDAFAFIDSYGRMA 1359

Query: 707  RFPISAIRVFAGRNSVGVRGISLAKG 732
                    +       G+  +++ KG
Sbjct: 1360 VILKDEFPLLG--KGKGLTAVAMKKG 1383


>gi|281429788|gb|ADA70033.1| DNA gyrase subunit A [Bacillus sp. NK-2]
          Length = 341

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 196/341 (57%), Positives = 267/341 (78%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G
Sbjct: 121 ILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS 
Sbjct: 181 VLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A 
Sbjct: 241 GKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAH 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           VILN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++
Sbjct: 301 VILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYL 341


>gi|156084089|ref|XP_001609528.1| DNA gyrase A subunit [Babesia bovis T2Bo]
 gi|154796779|gb|EDO05960.1| DNA gyrase A subunit, putative [Babesia bovis]
          Length = 1051

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 268/995 (26%), Positives = 442/995 (44%), Gaps = 199/995 (20%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + + DE+  S++ YA+++ILGRA+PD RDGLK VHRRIL+ M  M +  +  Y KCA
Sbjct: 98   VQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRKCA 157

Query: 76   RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            ++ G+V+GKYHPH + ++YDAL R++Q + +R+ L++G GNFGS D DPPAA RYTECRL
Sbjct: 158  KVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRYTECRL 216

Query: 136  QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +   LL ++GK+TVD  PN+D +  EP VL ++ P +L+NG  GIAVG+ATNIP HN
Sbjct: 217  SPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPPHN 276

Query: 195  LGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
              E++     +  N  ++D + L+ I+RGPDFPTG  I+     ++  Y TG+GSI+++ 
Sbjct: 277  PEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIMLQA 336

Query: 253  VSHIE--------------------------KTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
                E                           TSG R  I+V E+PY V  + ++  I++
Sbjct: 337  KYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAISK 396

Query: 287  LVREKRIVDIADLRDESDRQGYRVVIELKRGA----SADVILNQLYRYTSLQSLFSVNMV 342
             V    +  I+DLRDESDR G R+VIELK+        + I+ +L + + L S F  N +
Sbjct: 397  AVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCNFI 456

Query: 343  ALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            AL+  G KP R +L   LK ++ FR + V +R +    +A++R +++ G AIA   +D++
Sbjct: 457  ALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKIDDI 516

Query: 401  VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            V ++R S +   A R L ++ +                          L+  Q  A+L +
Sbjct: 517  VHMVRNSSSSAEAMRMLSEKRYG------------------------GLNAEQASAVLRM 552

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK---DELDTPRR 517
             L++L+ + RD I  E   L   IK    IL   S +  +I  EL  ++   ++  T R 
Sbjct: 553  SLSQLSRIERDKIDLEEKELSESIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRH 612

Query: 518  T--------------------------------------RIVEGLLDME----------- 528
                                                    I E  +  E           
Sbjct: 613  RCTTLSVSGHTSLGDGDVAQDYPPELGGNDEEFVDSISATIAEDHIANEPGNDPGDLVKQ 672

Query: 529  ----DEDCIVREDMVVTVSHLGYVKRVPLSV--YRAQR--------------------RG 562
                +      E  ++ +++ G ++R+ L    +R+Q+                     G
Sbjct: 673  NPDLEGHNPHDEPSLIVMNNYGLMQRIKLDNSFFRSQKSRYIPSSRLQQPYQGQYSIGEG 732

Query: 563  GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                    +   +      +     S +  S  G  +   V  L + +   +G ++   +
Sbjct: 733  ENEDVAPEITQSELQLHYGVCRPGDSCMMISKDGTCFVLPVSALRLCN---KGYSIWKQV 789

Query: 623  SLNQGE-----RITTIMPFPEDESS------------WNNLYVVFATKHGNVRRNKLSDF 665
             L   E      +T+ + F +D++S                Y+V     G V       F
Sbjct: 790  KLKSPENVEYFTVTSKLLFSQDQNSGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHF 849

Query: 666  IQ--INRSGKIAMKLDSRDEI--LSVETCTQENDILLTTKLGQCVRFPISA-IRVFAGRN 720
                + ++  I ++L +  E+  +    C  ++DI + T  G  +R  ++  +     R 
Sbjct: 850  PSGHLYKNPLIRLRLWNNKELKPIFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHRG 909

Query: 721  SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                + I L + D+V   AI+                            E +++++ND  
Sbjct: 910  KTRKKLIKLKENDKVTCGAIL----------------------------ESLSNVEND-- 939

Query: 781  VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                 ++E C+      + +L +SE G  K     + ++    G G   T  S     G 
Sbjct: 940  -----AKEICRFENYDNRHLLLLSEHGRAKLLHISELQLRRHGGYGYNITRQSSSTIEG- 993

Query: 841  LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            L A   V+ +D I+LVS  G L R     + +ASR
Sbjct: 994  LYAATVVDTDDDILLVSKDGLLARKDPFTLPVASR 1028


>gi|84796010|gb|ABC66093.1| DNA gyrase subunit A [Bacillus sp. DAU101]
          Length = 341

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 196/341 (57%), Positives = 265/341 (77%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG
Sbjct: 121 ILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T  
Sbjct: 181 VLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A 
Sbjct: 241 GKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAH 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           VILN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++
Sbjct: 301 VILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLEHYL 341


>gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 496

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 256/390 (65%), Positives = 301/390 (77%), Gaps = 1/390 (0%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           ++EKR+  I+DLRDESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG 
Sbjct: 1   MKEKRLEGISDLRDESDRDGMRIVVELKRDAIADVVLNQLYRYTPLQTSFGANMVALNGG 60

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +PE   L  +L+AF  FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR S
Sbjct: 61  RPELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTS 120

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
           P+P TAR  LM R W A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT 
Sbjct: 121 PDPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTA 180

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L RD+I +EL  L  EI + LDIL SR+R+  I+K EL  V++   TPR+T I++    +
Sbjct: 181 LXRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRKTEIIDSDFSV 240

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           EDED I REDMVVTVSH GYVKRVPLS YRAQ+RGGKGR+G+  RDEDFVT LF+ STHT
Sbjct: 241 EDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRLFVASTHT 300

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNL 646
            VLFFS  G  YKEKVWRLPI +P ARGKAL+NIL L N+GERI+TIMP PEDE+SW  L
Sbjct: 301 PVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPEDEASWETL 360

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            V+FAT  GNVRRNKLSDF  +NR+GKIAM
Sbjct: 361 DVMFATASGNVRRNKLSDFTTVNRNGKIAM 390



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 89/250 (35%), Gaps = 12/250 (4%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R  + S      R   +A    + D  ++      ++        G        A  + 
Sbjct: 114 IRLIRTSPDPNTAREALMARDWPAHD--IAPLIALVDDPRHRVADDGTYRLSETQARAIL 171

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R            GD++  +A      ADY + +     + A  +    +  E+ +  
Sbjct: 172 DLRLQRLTALXRDEIGDELKKLA---DEIADYLDILRSRARIQAIVKSELAEVRELFATP 228

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +  +      ++L  +E  ++TVS  G+ KR     +R   R GKG         +
Sbjct: 229 RKTEIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDED 288

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST----AKDERVV 892
               +  +F  + +  ++  SD+G   +  V  + IA+   +G  + +      + ER+ 
Sbjct: 289 ---FVTRLFVASTHTPVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERIS 345

Query: 893 SVERIRESEI 902
           ++  + E E 
Sbjct: 346 TIMPLPEDEA 355



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 16/245 (6%)

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
                V  +  +RL     +A     +  L+    + I   +    DE +     +    
Sbjct: 149 DPRHRVADDGTYRLSETQARAILDLRLQRLTALXRDEIGDELKKLADEIADYLDILRSRA 208

Query: 653 KHGNVRRNKLSD----FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +   + +++L++    F    ++  I       DE    +   +E+ ++  +  G   R 
Sbjct: 209 RIQAIVKSELAEVRELFATPRKTEIIDSDFSVEDE----DLIAREDMVVTVSHAGYVKRV 264

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQ 761
           P+S  R    R   G  G++    D V  + +          +D     +    +   A 
Sbjct: 265 PLSTYRA-QKRGGKGRAGMATRDEDFVTRLFVASTHTPVLFFSDQGQAYKEKVWRLPIAA 323

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                     I  L+N+      I      E   +   ++  +  G  +R    DF   N
Sbjct: 324 PNARGKALVNILHLQNEGERISTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFTTVN 383

Query: 822 RSGKG 826
           R+GK 
Sbjct: 384 RNGKI 388


>gi|225851095|ref|YP_002731329.1| DNA gyrase subunit A [Persephonella marina EX-H1]
 gi|225644811|gb|ACO02997.1| DNA gyrase subunit A [Persephonella marina EX-H1]
          Length = 1217

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 219/785 (27%), Positives = 371/785 (47%), Gaps = 112/785 (14%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE RL K A  +L D+ K+TVD + N+D S  EP VL A++PN++ NG  GIAVG++TN
Sbjct: 533  NTEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTN 592

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSI 248
            IP HN  EV +    + + P+  ++ L + I+GPDFPTG + I     I   Y  GRGS+
Sbjct: 593  IPPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSV 652

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             ++G + IE+  G+R +I++ EIPYQVNK  ++++IAELVR+ +   I+DLRDESDR G 
Sbjct: 653  TVKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGI 712

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            R+V+ELKR A  + +L +LYR T LQ    +N+  L G +P+   L G+L+ F+  R +V
Sbjct: 713  RIVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLVGKQPKTVDLKGLLQEFIKHRVDV 772

Query: 369  VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            + RRT + L KA +R H++ GL  A+ N D V+ I+R S +  +AR +L++         
Sbjct: 773  ITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEE-------- 824

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                LS+ Q +AIL++RL+R T L  D +  E + L ++I+E  
Sbjct: 825  ------------------FELSDTQAQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQ 866

Query: 489  DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
             ILSS    + +  +E+  + ++    R+T IVE               ++  +S    +
Sbjct: 867  RILSSEEEKIRVFIEEIDELLEKFGDERKTVIVEEKEA---GLTFEEHYILAVLSSGRIL 923

Query: 549  KRVPLSVYRAQRRGGKGRSGVV--MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
             R        +    K  + VV  ++  + +  +  V +   + F +  G  Y   V  L
Sbjct: 924  NRRIDDDADKKDIFQKVMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGKAYWSLVADL 983

Query: 607  PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            P      +G+     +++++GE + T       +       +   TK+G ++R    D  
Sbjct: 984  P------KGE---GRINIDEGEIVGTAF-----KGEGEEDRLFILTKNGIIKRMSYEDIF 1029

Query: 667  QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +++  I + L   D +++       + I + T+ G  + F  + +RV  G  + GV  
Sbjct: 1030 YKSQNHSI-IPLAEDDCVVTAFADDHPSLIGVYTRKGDLLLFERNQVRV-TGDKAKGVEA 1087

Query: 727  ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            I L +GD V    ++   D                                         
Sbjct: 1088 IDLDEGDTVAGGFLINSED----------------------------------------- 1106

Query: 787  EERCQELKLKEQFILTVSEKGFGKRTSSYDF-----RISNRSGKGIRATDVSKINEIGAL 841
                         I+TV++ G+ K     +F     ++  R+ KG+ A  + K +    L
Sbjct: 1107 ------------LIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVKLGKDD---FL 1151

Query: 842  VAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVE-RIR 898
                PV  ++ +   ++KG ++++ V++  I +A R   G  +     D  V +V+ +I+
Sbjct: 1152 SVAVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTAMGDPVLKIEGDYVVRAVKPKIK 1211

Query: 899  ESEIV 903
              E  
Sbjct: 1212 SEEND 1216



 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 73/120 (60%), Positives = 95/120 (79%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I +E++++YL YA++VI+GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K
Sbjct: 2   SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEV+GKYHPHG+ ++YDAL RMAQD++LR  LI+GQGNFGS+DGDPPAA RY   
Sbjct: 62  SARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRYCVT 121


>gi|317057035|ref|YP_004105502.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449304|gb|ADU22868.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 745

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 213/740 (28%), Positives = 355/740 (47%), Gaps = 54/740 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    IT  ++ +Y+ YA++VI+ RA P++ DG KP HR++L+ M  MG+   K   KCA
Sbjct: 26  VAEEKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYTE 132
            I G  M K +PHG+ AIY+ L R+++ + +L    ++ +GNFG         AA RYTE
Sbjct: 84  NIVGATM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTE 142

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+     L  D+ K+TVDF PNYD +  EP +  A +P +LVN   GI V MA+++  
Sbjct: 143 AKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASSVCP 202

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
            NL EV +  +A+I N D +    ++ ++GPDFP G  +L     ++  Y TGRGS+ +R
Sbjct: 203 FNLAEVCETAIALIKNKDANA---LDTLKGPDFPGGGYLLYDEAELEKIYRTGRGSVKLR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                   + +   I +TEIP      A++EKI  LV+  +I +I+ +RDE+D  G ++ 
Sbjct: 260 AKYRF---NKEERCIEITEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIG 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++K+G   D ++ +LY+ T LQ  +S N   L    P+   +  IL  +  FR + V R
Sbjct: 317 IDIKKGVDPDKLMQKLYKLTPLQDTYSCNFNILVHGYPKVMGVYEILDEWTRFRVDCVRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +Y L K +D+ H+L GL   + ++D+ +RIIR +         LM             
Sbjct: 377 RVEYDLKKKKDKLHLLKGLGKILLDIDKAIRIIRETEEESEVIPNLMI------------ 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            + E+Q   + E++L  L         +E   L  EI E  D+L
Sbjct: 425 --------------GFGIDEIQADYVAEIKLRHLNREYILKRTSETEKLEKEIAELEDVL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  ++  II +EL  V       R+T+      + ++E+E+ I      + +S  GY K
Sbjct: 471 GSEKKIKDIIIRELKDVIKNYGQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFK 530

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +  +   R         S   +++ D +      S    +LFFS    VYK K  R    
Sbjct: 531 KCTMQSLRM-------ASDQKLKEGDRMMSETESSNRAELLFFSDKASVYKSKASRFGNT 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G  +  +L  + GE   T++     E+   +  ++F  ++G   +  L  +    
Sbjct: 584 KASDLGDYIPAVLGFDNGEAFHTMV-----ETMDYSGCLLFVFENGKAAKVPLDSYATKT 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              K+A     +  ++++   T    ++L T  G+ + F  + +     RN+ GV+ ++L
Sbjct: 639 NRKKLANAYSDKSPLVAILKLTDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTL 698

Query: 730 -AKGDQVISMAIVLHADADY 748
            AK  +V    IV   +A+ 
Sbjct: 699 KAKNAKVEKAYIVSDEEAEN 718



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 78/216 (36%), Gaps = 24/216 (11%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
             L  ++ G   +  + ++R+ + +         L +GD+++S        ++  E + +
Sbjct: 519 CKLFISESGYFKKCTMQSLRMASDQ--------KLKEGDRMMS----ETESSNRAELLFF 566

Query: 755 MKHMSAQRRLISGDTEEITSLKND--SSVEGNISEERCQELKLKEQF---ILTVSEKGFG 809
               S  +   S       S   D   +V G  + E    +     +   +L V E G  
Sbjct: 567 SDKASVYKSKASRFGNTKASDLGDYIPAVLGFDNGEAFHTMVETMDYSGCLLFVFENGKA 626

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            +     +       K   A      ++   LVA+  + DN Q++L +  G  +      
Sbjct: 627 AKVPLDSYATKTNRKKLANAY-----SDKSPLVAILKLTDNAQVMLRTTNGRALLFDTAL 681

Query: 870 I-RIASRATKGVVIFSTA-KDERVVSVERIRESEIV 903
           +    +R T+GV + +   K+ +V     + + E  
Sbjct: 682 LLPKTTRNTQGVQVMTLKAKNAKVEKAYIVSDEEAE 717


>gi|47094547|ref|ZP_00232209.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017079|gb|EAL07950.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 440

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 201/465 (43%), Positives = 297/465 (63%), Gaps = 26/465 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + K A+  G V+G 
Sbjct: 1   MGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE RL   +  LL 
Sbjct: 61  YHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP HNL E+++  + 
Sbjct: 121 DIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIK 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R  + IE   G R+
Sbjct: 181 RLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +ELK+ A+A+ +L
Sbjct: 241 QITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R 
Sbjct: 301 NYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQ 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL  A++ LDEV+++IR S +   A+  L  +                        
Sbjct: 361 HILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                SE Q  AI+ L+L RLT     ++++E  SL  ++     
Sbjct: 397 --YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQLVFLKK 439


>gi|261886133|ref|ZP_06010172.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 208/390 (53%), Positives = 284/390 (72%), Gaps = 5/390 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I SS+    + I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENIFSSN----QDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  ++GQGNFGSV
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M  I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIE    +++ IVV E+PYQVNKA +   IA+LV+EK I  I+++R
Sbjct: 237 YKTGRGRIKLRAKTHIE-KKPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK 
Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           F+  R+ V++RRT + L KAR RAH+L G 
Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGF 385


>gi|302839180|ref|XP_002951147.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f. nagariensis]
 gi|300263476|gb|EFJ47676.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f. nagariensis]
          Length = 1159

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 251/1020 (24%), Positives = 411/1020 (40%), Gaps = 159/1020 (15%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E     +    + DE  NSYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++G+  NK
Sbjct: 113  EPVTGRVEDTELYDEAYNSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYAMHELGLVHNK 172

Query: 70   KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
             + KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +++R  L++G GNFGS+D DP AA R
Sbjct: 173  PFKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQPFAMRQTLVDGHGNFGSLDNDPAAAMR 232

Query: 130  YTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            YTECRL +AA   LL D+G DTVD++P +D S                       VG+A+
Sbjct: 233  YTECRLTRAAGEALLADIGPDTVDWQPTFDES----------------------QVGLAS 270

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            NIP HNLGEVV    A+I +P +  + L++ +RGPDFPTG  ++    +   Y TGRGS+
Sbjct: 271  NIPPHNLGEVVSALRALITDPRVTTEELLKHVRGPDFPTGGEVVVGPELLQVYETGRGSV 330

Query: 249  VIRGVSHIEKTSGDREQIVV-------TEIPYQVNKAAMLEKIAELVREKRI--VDIADL 299
            V+RG + IE+  G               E+     +       A      +    DI   
Sbjct: 331  VVRGKATIERVGGGSGGGGGGDDGGGNDEVATAAGRTRRRRGAAAAAAAAQAVDEDIGGG 390

Query: 300  RDESDRQGYRVVIELKRGASADVI--LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            R  S R+   +     +   +D++  + +L     L+    V   +          +   
Sbjct: 391  RGGSGRELVVITELPYQVYKSDLVASIAELIESKQLEGASDVRDESDRTGVRVVVEVKKG 450

Query: 358  LKAFVAFREEVVVRRTK-------YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
                V   +     R +         L   +     L  + +A  +    V   R S + 
Sbjct: 451  YSGKVVLAQLYNSTRLQVNFHYNCTSLLNTKPLQMGLKDMLLAFLDFRCDVVQRRSSASL 510

Query: 411  ETARRELM----------QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
              A++ L           +     + + D+    D  +          LSE Q  AIL L
Sbjct: 511  RAAQQRLHLVEGFLRLLREEGRLDAVVADVRAAEDGGAARRALVAKHGLSEEQAEAILGL 570

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
             L RLTGL    +  E   L   I    DIL++R+ LL +++QE  ++      PRRT +
Sbjct: 571  TLRRLTGLEAAKLDQERRELQQSIARLGDILANRTTLLAVVEQEAEALAAAFPEPRRTAL 630

Query: 521  VEGLL---DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
            V           E  +  +  +V  S  G+++R+      AQ R  +G+SG+ +R  D +
Sbjct: 631  VAAEDVPATPSLESLVPPKPCLVLASRRGFLRRLAGDSLTAQNRNTRGKSGIRLRSGDQL 690

Query: 578  TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              L   S    ++  +  G ++K +   +P  S  A   +     +    E +  +    
Sbjct: 691  ASLVAGSDRDLLMVVTPDGRMFKTRTAAVPPSSSSASSASPTAAAASGGTESVGRMKEVE 750

Query: 638  EDESSWN---------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--- 679
            +  S                     +V  T+ G ++R  L +  + ++ G + M L+   
Sbjct: 751  DAGSEAKEEEEVEGEDVGGAVAGPCLVLCTRGGRIKRLALKNR-RESKKGIMVMGLESSS 809

Query: 680  -----------------------------SRDEILSVETCT-QENDILLTTKLGQCVRFP 709
                                           +E+          + +++ +  GQ + FP
Sbjct: 810  SKATGDGRDSSSSSSARDAASKKKGPDEAGEEELCWAALSRSPGDVVVVASAEGQVLLFP 869

Query: 710  ISAIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADA-------------------- 746
             + +RV +G  S G   + ++K    D++  + ++    A                    
Sbjct: 870  ATDVRV-SGPQSAGTHAMRMSKRRPNDRIADITVLPAELAPLLGSQLPTTASASAGTATA 928

Query: 747  ---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                 ++          +     G+     ++  +   E    EE           +L V
Sbjct: 929  ASERGEDVAEDGDDDGEEEEEEGGEQGLTAAIDEEQEGEQEEGEEETSSRGPAGPCLLLV 988

Query: 804  SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI------------------------- 838
            +  G GKR      R+  R   G+ A  V+                              
Sbjct: 989  TAHGIGKRIPLGQLRLGMRRQAGMVAIRVASAERARQRSRRSSSGGTAAQWQQQEQQQQG 1048

Query: 839  ----GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                  +VAV  V D +++I+ S  G ++R  V+ I +  R T+G  +      + VV V
Sbjct: 1049 AAGPDHVVAVLVVRDGEEVIMASRNGVVVRQSVDGIAVQGRMTRGTFVMQLDGGDEVVDV 1108



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 88/290 (30%), Gaps = 62/290 (21%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLTT 700
                +V A++ G +RR         NR+  GK  ++L S D++ S+   +  + +++ T
Sbjct: 647 PPKPCLVLASRRGFLRRLAGDSLTAQNRNTRGKSGIRLRSGDQLASLVAGSDRDLLMVVT 706

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+  +                                  +   +            ++
Sbjct: 707 PDGRMFKTR-----------------------------TAAVPPSSSSASSASPTAAAAS 737

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                 G  +E+    +++  E  +  E           +L  +  G  KR +  + R S
Sbjct: 738 GGTESVGRMKEVEDAGSEAKEEEEVEGEDVGGAVAGPCLVL-CTRGGRIKRLALKNRRES 796

Query: 821 NRSGKGIRATDVS---------------------------KINEIGALVAVFPVNDNDQI 853
            +    +     S                           +  E     A    +  D +
Sbjct: 797 KKGIMVMGLESSSSKATGDGRDSSSSSSARDAASKKKGPDEAGEEELCWAALSRSPGDVV 856

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRES 900
           ++ S +G ++  P  ++R++   + G      +K   ++R+  +  +   
Sbjct: 857 VVASAEGQVLLFPATDVRVSGPQSAGTHAMRMSKRRPNDRIADITVLPAE 906


>gi|297578850|ref|ZP_06940778.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
 gi|297536444|gb|EFH75277.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
          Length = 460

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/490 (33%), Positives = 251/490 (51%), Gaps = 83/490 (16%)

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + +  Y I  DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI   + IL+S
Sbjct: 1   MAEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILAS 59

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH GYVK   L
Sbjct: 60  TERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGYVKYQLL 119

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++LP+ S  A
Sbjct: 120 SDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTA 179

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F  +  +G 
Sbjct: 180 RGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLDQFANVRANGL 236

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF----------------- 716
           IA+ L   D ++ V+    E++I+L +K G+ VRF  S                      
Sbjct: 237 IALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEI 296

Query: 717 -------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                   GR + GVRG+ LA GDQV+S+                               
Sbjct: 297 KFKGVRPMGRTAAGVRGMKLADGDQVVSLI------------------------------ 326

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                  +   E  +LTV+E G+GKRTS  ++    R  +G+ +
Sbjct: 327 -----------------------VPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVS 363

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV +  T++ E
Sbjct: 364 IKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGE 421

Query: 890 RVVSVERIRE 899
            VV ++RI E
Sbjct: 422 SVVGLQRIDE 431



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 155/449 (34%), Gaps = 52/449 (11%)

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L        E ++   K LL +     H+L      +  + E +  IR       ARR  
Sbjct: 28  LHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTE 85

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE- 476
           +  + +  D+++LI   D     + +       + Q  +  E +     G     ++ E 
Sbjct: 86  ITAATHDIDMEELIARED----VVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEED 141

Query: 477 -LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--------EGLLDM 527
            +  L +       +L S       +K   L +     T R   IV        E +  +
Sbjct: 142 YIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASR--TARGKPIVNLLPLEENERITAI 199

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                   +  +   +  G VK+  L  +   R    G   + +RDED +  + I    +
Sbjct: 200 LPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVDITDGES 257

Query: 588 SVLFFSSLGFVYKEKVWR----------------------LPIGSPQARGKALINILSLN 625
            ++ FS  G V + K                              P  R  A +  + L 
Sbjct: 258 EIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLA 317

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RD 682
            G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K+     
Sbjct: 318 DGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNG 371

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+ +  + 
Sbjct: 372 SVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVVGLQRID 430

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEE 771
             +             +        D E+
Sbjct: 431 EIEESELPEGEEALVENDAPVAQDDDGEQ 459


>gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 478

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 195/518 (37%), Positives = 299/518 (57%), Gaps = 47/518 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +     VV+        D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           E ++   +L S  RL  ++++   S        RR  I
Sbjct: 448 EREKLEQLLGSERRLNTLLEKRNQS--------RRREI 477


>gi|295111080|emb|CBL27830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Synergistetes bacterium SGP1]
          Length = 536

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 190/384 (49%), Positives = 264/384 (68%), Gaps = 5/384 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  I   +   + I S+ +  E+++SYL YA++VI+GRA+PD+RDGLKPV RR+L+ M
Sbjct: 24  MSEEKIEG-QRAGERILSLPLVGEIKDSYLNYAMSVIVGRALPDVRDGLKPVQRRVLYAM 82

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N  Y K ARI GE MGKYHPHG+++IYD + R+AQDWSLR  L++GQGNFGSV
Sbjct: 83  SELGLRHNSAYKKSARIVGETMGKYHPHGDSSIYDTMVRLAQDWSLRYCLVDGQGNFGSV 142

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL +    +L D+ +DTV++ PN+D S +EP+ L +  PN+LVNG  
Sbjct: 143 DGDRAAAMRYTEARLHELGELMLADIDEDTVEWGPNFDESLKEPLSLPSVLPNLLVNGST 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD----ALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D    +++      +     LME + GPDFPTG  ILGR G
Sbjct: 203 GIAVGMATNIPPHNLREVTDVLCWLLEEGINPAEASLADLMERLPGPDFPTGGQILGRQG 262

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRG +++RG  H+E     +  ++VTEIPY VNK  ++E + +  ++K I  I
Sbjct: 263 IYDAYRTGRGKVIVRGRMHVEDGRRGKVNVIVTEIPYAVNKTTLIETMVKAAQDKVIDGI 322

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D+RDES+R+G R+V+EL R A+ D+++ QLY+ T LQ+ F V  +AL+   P    L  
Sbjct: 323 QDIRDESNREGMRIVLELSRDANPDLVMRQLYKRTQLQATFGVINLALDRQTPRLLPLAS 382

Query: 357 ILKAFVAFREEVVVRRTKYLLNKA 380
           IL  F+++R +VV RRT++ LNKA
Sbjct: 383 ILGLFLSYRRDVVRRRTQFRLNKA 406


>gi|116090719|gb|ABJ55986.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 325

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 198/325 (60%), Positives = 258/325 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 61  DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 121 TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 181 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+
Sbjct: 241 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYK 300

Query: 330 YTSLQSLFSVNMVALNGYKPERFTL 354
            T+LQ+ F +N++AL   +P+  +L
Sbjct: 301 QTALQTSFGINLLALVDGQPKVLSL 325


>gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
 gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
          Length = 655

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 202/683 (29%), Positives = 330/683 (48%), Gaps = 69/683 (10%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA    E +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 15  AAHALYEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 74

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +G
Sbjct: 75  MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 134

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 135 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 189

Query: 305 RQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 190 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 249

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R 
Sbjct: 250 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR- 305

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 306 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 340

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D +  E + 
Sbjct: 341 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 400

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 401 VVLSEKGWI--------RHAKGHNVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 452

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 453 SLESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFV 504

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 505 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 564

Query: 718 GRNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                 +  I  AK    ++V+S  +VL   A           + A +R +     ++ +
Sbjct: 565 KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDN 616

Query: 775 LKNDSSVEGNISEERCQELKLKE 797
            + +    G +     Q +   E
Sbjct: 617 FRGERGRRGALLPRGLQRVTAIE 639



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 482 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 538

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 539 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 574


>gi|312275252|gb|ADQ57976.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/396 (52%), Positives = 275/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQ 396


>gi|312275248|gb|ADQ57974.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/396 (52%), Positives = 274/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQ 396


>gi|312275274|gb|ADQ57987.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275278|gb|ADQ57989.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/396 (52%), Positives = 275/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGIRDGQ 396


>gi|312275250|gb|ADQ57975.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275256|gb|ADQ57978.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275260|gb|ADQ57980.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275262|gb|ADQ57981.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275264|gb|ADQ57982.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275266|gb|ADQ57983.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275270|gb|ADQ57985.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275282|gb|ADQ57991.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275284|gb|ADQ57992.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/396 (52%), Positives = 275/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQ 396


>gi|75763035|ref|ZP_00742825.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489482|gb|EAO52908.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 531

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 204/546 (37%), Positives = 309/546 (56%), Gaps = 35/546 (6%)

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
              AA R TE  L   A  LL DL K+TV+F    + + +EPVVL A +PN+LVNG  GI
Sbjct: 3   TQAAAMRNTEAPLSPIASELLRDLDKETVEFVSTLNDTSEEPVVLPAAFPNLLVNGSTGI 62

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           + G AT IP H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY 
Sbjct: 63  SAGYATEIPPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYE 122

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TG+G I+IRG + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE
Sbjct: 123 TGKGKIIIRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDE 182

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +DR G R+V+ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++
Sbjct: 183 TDRTGLRIVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYI 242

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             ++EV+ RR++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +  
Sbjct: 243 GHQKEVITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK-- 300

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                      +E Q  AI+ L+L RLT      ++ E + L  
Sbjct: 301 ------------------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNK 336

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVV 540
           +I E   IL S  RLL +IK +L  VK      RR         + ++ E  I +ED++V
Sbjct: 337 KILELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIV 396

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GYVKR     + A      G     M++ D + + F  +T  +VL F+S G    
Sbjct: 397 TVTKEGYVKRTGWRSHNASNGKDFG-----MKEGDILLERFDTNTTETVLLFTSKGNYIY 451

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V+ +P    +  G+ + NI+SL++ E I  +   P  E      ++VF T++G +++ 
Sbjct: 452 LPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFEE--EKRFIVFVTRNGMIKKT 509

Query: 661 KLSDFI 666
           +L+ + 
Sbjct: 510 ELNQYK 515


>gi|312275246|gb|ADQ57973.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275258|gb|ADQ57979.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275272|gb|ADQ57986.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275276|gb|ADQ57988.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275280|gb|ADQ57990.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 207/396 (52%), Positives = 275/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDYAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQ 396


>gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
 gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
          Length = 461

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 191/494 (38%), Positives = 291/494 (58%), Gaps = 39/494 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y  GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  + VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+     LM+R  
Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAV---LMER-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     ++++Q  AIL+ +L  L  L    IR E + L  
Sbjct: 412 ------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELEK 447

Query: 483 EIKECLDILSSRSR 496
           E ++   +L S  R
Sbjct: 448 EREKLEQLLGSERR 461


>gi|116090721|gb|ABJ55987.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 325

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 193/325 (59%), Positives = 259/325 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 181 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+
Sbjct: 241 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYK 300

Query: 330 YTSLQSLFSVNMVALNGYKPERFTL 354
            T+LQ+ F +N++AL   +P+   L
Sbjct: 301 QTALQTSFGINLLALVDGQPKVLNL 325


>gi|330685619|gb|EGG97263.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU121]
          Length = 402

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 275/397 (69%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGIIQGLDGIKKAYESGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R++++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSEAIKNFLYKNSDLQISYNFNMVAISDGRPKLMGIKQIIDSYINHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  A  R H++ GL  A++ LDEV+ +IR S N + 
Sbjct: 365 DLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKE 401


>gi|312275268|gb|ADQ57984.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 205/396 (51%), Positives = 274/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KR+  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRVEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR     + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNFKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQ 396


>gi|312275244|gb|ADQ57972.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 207/396 (52%), Positives = 274/396 (69%), Gaps = 1/396 (0%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYRLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I++  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIEDEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQ 453
            R W+  ++  +++    D+S          + + Q
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQ 396


>gi|56159846|gb|AAV80734.1| gyrase subunit A [Bacillus sp. NRRL B-23964]
          Length = 327

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/324 (58%), Positives = 256/324 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TNHELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPERFTLI 355
           +LQ+ F +N++AL   +P+  +L 
Sbjct: 301 ALQTSFGINLLALVDGQPKVLSLK 324


>gi|56159858|gb|AAV80740.1| gyrase subunit A [Bacillus sp. NRRL B-23980]
          Length = 327

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 191/323 (59%), Positives = 256/323 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPERFTL 354
           +LQ+ F +N++AL   +P+  +L
Sbjct: 301 ALQTSFGINLLALVDGQPKVLSL 323


>gi|56159832|gb|AAV80727.1| gyrase subunit A [Bacillus subtilis]
          Length = 321

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 191/321 (59%), Positives = 257/321 (80%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG+
Sbjct: 1   DYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           +A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT
Sbjct: 61  SAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDT 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD
Sbjct: 121 IDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPD 180

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
           I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE
Sbjct: 181 ITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 240

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           +PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ 
Sbjct: 241 LPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 300

Query: 331 TSLQSLFSVNMVALNGYKPER 351
           T+LQ+ F +N++AL   +P+ 
Sbjct: 301 TALQTSFGINLLALVDGQPKV 321


>gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
 gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
          Length = 433

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 188/465 (40%), Positives = 279/465 (60%), Gaps = 39/465 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           +FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+     LM R  
Sbjct: 357 SFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-- 411

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                                     L+++Q  AIL+ + A  T 
Sbjct: 412 ------------------------FDLTDLQADAILDTKYALRTE 432


>gi|603238|gb|AAA57342.1| DNA gyrase A subunit [Mycoplasma gallisepticum]
 gi|1583653|prf||2121321B DNA gyrase:SUBUNIT=A
          Length = 383

 Score =  368 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 185/367 (50%), Positives = 259/367 (70%), Gaps = 1/367 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPV   +L+G    G+  +K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPV-TWVLYGAYTSGLTHDKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD   A RYTE RL
Sbjct: 77  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAGAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 137 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 197 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 257 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 317 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 376

Query: 376 LLNKARD 382
            L KA+ 
Sbjct: 377 ELKKAKA 383


>gi|56159842|gb|AAV80732.1| gyrase subunit A [Bacillus subtilis]
          Length = 320

 Score =  368 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 191/320 (59%), Positives = 257/320 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI
Sbjct: 121 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 241 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPER 351
           +LQ+ F +N++AL   +P+ 
Sbjct: 301 ALQTSFGINLLALVDGQPKV 320


>gi|325114455|emb|CBZ50011.1| putative DNA gyrase subunit A [Neospora caninum Liverpool]
          Length = 1533

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 265/976 (27%), Positives = 424/976 (43%), Gaps = 182/976 (18%)

Query: 11   EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +++  +      +E++ S+L YA + IL RA+PD+RDGLKPVHRR+++ M Q+ V  +  
Sbjct: 135  DKKVSLLDTQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHVHPSGP 194

Query: 71   YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            + KCAR+ GEV+GK+HPHG+ A+YDALAR+AQ +  R  LI+G GNFGSVDGDPPAA RY
Sbjct: 195  FRKCARVVGEVLGKFHPHGDQAVYDALARLAQTFVARHPLIDGHGNFGSVDGDPPAAMRY 254

Query: 131  TECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            TECRL +      L +L    V FRPN+D S +EPVV  A  P +L+ G  GIAVGM+T 
Sbjct: 255  TECRLTRFCEDALLKNLSDKVVPFRPNFDASEEEPVVFPASVPLLLIQGSSGIAVGMSTQ 314

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            IP HNL EV+D  VA+I +P++  + L++I+ GPDFPTG +++    I +AY  G G ++
Sbjct: 315  IPPHNLHEVIDAAVALIRDPNLPDEELLKIVPGPDFPTGGLLVNAEEIPSAYKEGHGRVL 374

Query: 250  IRGVSHI---------------------------EKTSGDRE------------------ 264
            +RG  H+                           E+  G  E                  
Sbjct: 375  LRGRVHLEGEEGEEEGEEEGEEDVKKSAVRGRDREREDGGNEEQEGKRSRIKGKEKRKER 434

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            ++V+TE+PY VNK+ +++ IA+++  K +  +A +RDESD +G RVV+ L+R A A  IL
Sbjct: 435  RLVITELPYGVNKSTVMQVIAQMISVKFLEGVASVRDESDWRGIRVVLVLRREADAHTIL 494

Query: 325  NQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
              L ++T+LQ    +N++AL  G +P RF+L  +L ++++FR + + R       + + R
Sbjct: 495  TLLLKHTNLQVYIPMNLIALEKGTRPVRFSLKSLLLSWISFRFDTLRRLLAAEEAERKAR 554

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            +H+L GL  AV  +D+VV+ +R S + + A+R+L +                        
Sbjct: 555  SHLLEGLLRAVNLMDQVVKTVRESLSADEAKRKLAE------------------------ 590

Query: 444  DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
               +  S  Q +A+L L L+RLT L R  + +E       +     +L+  + +  ++  
Sbjct: 591  -PPLGFSPAQAQALLRLTLSRLTRLERRQLEDEAAEQTRRLARLASLLAHDNEIYDLMTD 649

Query: 504  ELLSVKDELDTPRRTRIV------------------------------------------ 521
            EL ++K     PRRT++V                                          
Sbjct: 650  ELKALKSRHRAPRRTKVVWPRGKGRDRAKRPERTPGAGAEENERPGSRKGRSGREQPGAG 709

Query: 522  EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA------QRRGGKGRSGVVMRDED 575
                 + D      E  V  VS      R     YR       +R+  KG  G    + +
Sbjct: 710  HDSATVGDGTEARPESEVARVSGT-TEAREGTRTYRQAVSGRGERKDAKGARGGGRDEGE 768

Query: 576  FVTDLFIVS-THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-- 632
                    + +H S       G V                G+         +   +    
Sbjct: 769  KNRVTGEGTASHDSAADARESGDV------EASEAERDPEGE---TSRESEEDAHVPFGE 819

Query: 633  IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-------------D 679
            I    +++   N   V+  +    VRR  LS +  + R       L             D
Sbjct: 820  IQNMNKEDCISNQRNVILLSSPALVRRLPLSAYPTLRRGALGLRSLARSSALEGEEQRRD 879

Query: 680  SRDE--------------------ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              DE                    +  V +C  ++ +L  +  G     P   +   A R
Sbjct: 880  VEDEDLGANGLSTVGKRSDLGAPSLQGVWSCWTKDRLLFISANGYVSVVPAY-LIPPASR 938

Query: 720  NSVGV-------------RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             S G              +   L   ++ +         ++ D     +K    +RRL+ 
Sbjct: 939  VSRGASLPHVLFDGFKKKKLALLRPDERELGAGSSADVLSEEDRIKREVKREEKERRLLR 998

Query: 767  GDTEEITSLKNDSSVEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
              ++  T L    S +   + E       K K +F+L V+E+G   +         +R  
Sbjct: 999  EASQVATVLAVTPSSQAESAREVGAAKSGKTKRRFLLVVTEQGRIAKVKLERILGQHRET 1058

Query: 825  KGIRATDVSKINEIGA 840
            K  +   V+  + + A
Sbjct: 1059 KFKKILAVAPNDRVRA 1074



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V       ++     
Sbjct: 1218 IVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVVPPQLEGPEKTTEAA 1277

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            K   +Q              +    +           L   +  ++       GKR    
Sbjct: 1278 KEGDSQATETGEARRSSNEGEPSLLIVTAAGFVHFAFLHSADCLLVPA-----GKRLRVS 1332

Query: 816  DFRISNRSGKGIRATDVSKI 835
              R+  R G G+R   + + 
Sbjct: 1333 ALRMQRRRGVGVRVIRLVQR 1352



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 102/305 (33%), Gaps = 31/305 (10%)

Query: 588  SVLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            S++  +  G   +     L   GS + RG   +  + L  G+ + ++   P         
Sbjct: 1217 SIVIVTRHGMGLRFPASSLRAAGSSKTRG---VRAIRLRAGDSVASVAVVPPQLEGPEKT 1273

Query: 647  YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
                A K G+ +  +  +  + +  G+ ++ + +    +        + +L+    G+ +
Sbjct: 1274 TE--AAKEGDSQATETGEARRSSNEGEPSLLIVTAAGFVHFAFLHSADCLLV--PAGKRL 1329

Query: 707  RFPISAIRVFAGRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            R           R  VGVR I L      K +   S A     +   D       H S+ 
Sbjct: 1330 RVSA---LRMQRRRGVGVRVIRLVQRKQPKREAGESGAPGESGECGSDVPPRRETHCSSA 1386

Query: 762  RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
             R   G + +  S +   +      E++  E        LT  E G  + ++S +     
Sbjct: 1387 WRQGKGSSAD--SKEEREAHAAKAGEDKGLEGT------LTSQENGLAEPSASEE----- 1433

Query: 822  RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATKGV 880
                 + A      +           +++ +++ V+  G L+R     I     R  +GV
Sbjct: 1434 -GSNYVVALLTLASSREAGRAKQAKGSEDRELLSVTQDGFLLRQSCEGIPMPRGRLARGV 1492

Query: 881  VIFST 885
             +   
Sbjct: 1493 TLQRL 1497



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 853  IILVSDKGTLIRVPVNEIRIASRA-TKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            I++V+  G  +R P + +R A  + T+GV        + V SV  +       E  +TE
Sbjct: 1218 IVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVVPPQLEGPEK-TTE 1275



 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 110/312 (35%), Gaps = 60/312 (19%)

Query: 523  GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG-------------V 569
             + +M  EDCI  +  V+ +S    V+R+PLS Y   RRG  G                 
Sbjct: 819  EIQNMNKEDCISNQRNVILLSSPALVRRLPLSAYPTLRRGALGLRSLARSSALEGEEQRR 878

Query: 570  VMRDED------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             + DED                   +  ++   T   +LF S+ G+V     + +P  S 
Sbjct: 879  DVEDEDLGANGLSTVGKRSDLGAPSLQGVWSCWTKDRLLFISANGYVSVVPAYLIPPASR 938

Query: 612  QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
             +RG +L ++L  +  ++    +  P++            ++   ++R       ++ R 
Sbjct: 939  VSRGASLPHVL-FDGFKKKKLALLRPDERELGAGSSADVLSEEDRIKR-------EVKRE 990

Query: 672  GKIAMKLDSRDEILSVETCTQEN-------------------DILLTTKLGQCVRFPISA 712
             K    L    ++ +V   T  +                    +L+ T+ G+  +  +  
Sbjct: 991  EKERRLLREASQVATVLAVTPSSQAESAREVGAAKSGKTKRRFLLVVTEQGRIAKVKL-E 1049

Query: 713  IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEE 771
              +   R +   + +++A  D+V +  ++    D    +    +       +  S + +E
Sbjct: 1050 RILGQHRETKFKKILAVAPNDRVRAATLLEEEVDTGEKKEGSRVGDEQGTAKPTSTNEKE 1109

Query: 772  ITSLKNDSSVEG 783
              + +  +   G
Sbjct: 1110 TKNKQGGTRTPG 1121



 Score = 41.1 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 30/194 (15%)

Query: 718 GRNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +++ G RG    +G++  ++       D+  D R       S   R   G+T    S +
Sbjct: 753 RKDAKGARGGGRDEGEKNRVTGEGTASHDSAADARESGDVEASEAERDPEGETSR-ESEE 811

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT------ 830
           +     G I     ++    ++ ++ +S     +R     +    R   G+R+       
Sbjct: 812 DAHVPFGEIQNMNKEDCISNQRNVILLSSPALVRRLPLSAYPTLRRGALGLRSLARSSAL 871

Query: 831 --------------------DVSKINEIGA--LVAVFPVNDNDQIILVSDKGTLIRVPVN 868
                                V K +++GA  L  V+     D+++ +S  G +  VP  
Sbjct: 872 EGEEQRRDVEDEDLGANGLSTVGKRSDLGAPSLQGVWSCWTKDRLLFISANGYVSVVPAY 931

Query: 869 EIRIASRATKGVVI 882
            I  ASR ++G  +
Sbjct: 932 LIPPASRVSRGASL 945


>gi|56159848|gb|AAV80735.1| gyrase subunit A [Bacillus sp. NRRL B-23958]
          Length = 325

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 189/322 (58%), Positives = 254/322 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLI 355
           Q+ F +N++AL   +P+  +L 
Sbjct: 301 QTSFGINLLALVDGQPKVLSLK 322


>gi|56159850|gb|AAV80736.1| gyrase subunit A [Bacillus sp. NRRL B-23959]
          Length = 324

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 189/322 (58%), Positives = 254/322 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLI 355
           Q+ F +N++AL   +P+  +L 
Sbjct: 301 QTSFGINLLALVDGQPKVLSLK 322


>gi|229815926|ref|ZP_04446249.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
 gi|229808479|gb|EEP44258.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
          Length = 746

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 204/737 (27%), Positives = 352/737 (47%), Gaps = 53/737 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +T+  IT+ ++ +Y+ YA++  + RA P++ DG KP HR++L+ M +MG+   ++  
Sbjct: 24  HSEVTAQPITETLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGERQ- 81

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAER 129
           K A I G+ M K +PHG+AAIY+ + R+A  + +L    +E +GNFG         AA R
Sbjct: 82  KSANIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L      +  D+ KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++
Sbjct: 141 YTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASD 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSI 248
           I   NL EV    +  +++P      L+E +  PDF TG  I+ R   ++    TG GS 
Sbjct: 201 ICGFNLNEVCTATMHFLEDPSC---DLLEYMPMPDFSTGGEIIYRREEMERIIETGLGSF 257

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR          +   I V EIPY      ++++I +L +E ++ +IAD+RDE+D  G 
Sbjct: 258 QIRSRWR---WVPEERIIEVYEIPYTTKTDIIIDRIIKLSKEGKVREIADIRDETDLSGL 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+LKRG   + ++ +LYR T+LQ  FS N   L    P    +  IL  +VA+R + 
Sbjct: 315 RIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGYPRVMGVRQILHEWVAWRIQS 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR  + L K  +R H+L GL   + ++D+ + IIR +         LM+         
Sbjct: 375 TRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMR--------- 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + E Q   + EL+L  +      +   ++  L  EI E  
Sbjct: 426 -----------------GFDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELE 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
           +ILSS   +  +I+ EL +V  +   PRRT  +E   ++++  E  +    + + +S  G
Sbjct: 469 EILSSEDNIKKVIRDELAAVNKKYVMPRRTGRIEPSDVIEVSLEPEVEEYPVTIMLSREG 528

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++   V R         + +  +D D     F  +    +L F++   VYK KV   
Sbjct: 529 YLKKMTDRVLRK-------AAELKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAF 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L   L ++  E +  ++   + ++      V+F  ++G   R  L+ ++
Sbjct: 582 EDTKSAQLGSYLATDLEMDPDESVIWVIDPEDYKAD-----VLFVFENGRAVRVALAGYV 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 ++   +    ++L  +   ++ DI L +   + + F  S ++     N+ GV+ 
Sbjct: 637 TKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMNFNTSLLKTKTTTNTQGVQA 696

Query: 727 ISLAKGDQVISMAIVLH 743
            +  KG  V +++ V  
Sbjct: 697 FTAKKGRVVTTVSTVEE 713


>gi|56159844|gb|AAV80733.1| gyrase subunit A [Bacillus sp. NRRL B-23936]
          Length = 319

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 190/318 (59%), Positives = 253/318 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 122 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 181

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 182 TNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 241

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 242 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 301

Query: 332 SLQSLFSVNMVALNGYKP 349
           +LQ+ F +N++AL   +P
Sbjct: 302 ALQTSFGINLLALVDGQP 319


>gi|317471525|ref|ZP_07930876.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|316901020|gb|EFV22983.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 651

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 182/597 (30%), Positives = 303/597 (50%), Gaps = 36/597 (6%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDF  N+D + +EP VL  R PN+L+NG  GIAVGM T+IP HNLGEVVD  +A +++
Sbjct: 37  NVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMIAYLED 96

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--GDREQI 266
             +  + L+  I+GPDFPTG +++ +  IK  Y  G G + +RG    E     G+++++
Sbjct: 97  ESVANEDLLTYIQGPDFPTGGLVVNKKDIKTIYTEGSGKLKLRGKVVFEPGKKRGEKDKL 156

Query: 267 VVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           V+TEIPY +   N    L  +  LV  K+  DIAD+ +ES ++G R+V+ELK+G   + +
Sbjct: 157 VITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELKKGTDIERL 216

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            N LY+ T L+  F VNM+A+   +PE  +L  I+     F   +V R+ + LL+K  D+
Sbjct: 217 KNLLYKKTKLEDTFGVNMLAIVDGRPETLSLRDIIAHHTEFHYGLVKRKYQTLLSKLYDQ 276

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             V  GL  A   +D ++ I+R S N + A+  L +        K        SS ++  
Sbjct: 277 REVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKGEVGNIRFK--------SSESMIE 328

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
              +  +E Q  AIL+LRL +L GL    +R E   +  +I E  DIL + + +  ++KQ
Sbjct: 329 ACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVAKIAEYEDILHNPASMQRVMKQ 388

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           +L+ +K E    RRT + +G   + +E+ +  E +   +   GY K    + Y+  +   
Sbjct: 389 DLMKIKKEYQRERRTVVEDGAEAVFEEEPLKEEQVYFVMDRFGYAKTFDKATYQRNQENA 448

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
                           +        +  F+  G +++ KV  +P G  + +G  + N+ +
Sbjct: 449 SRDYKY----------IVPCMNTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLGN 498

Query: 624 LN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            +   E I  ++       +  +  + FAT+ G ++    ++F Q+ +    A KL   D
Sbjct: 499 YDSSDEAIIAVLA----AEAMTHDSLFFATEQGMLKIVSGTEF-QVTKRTVSATKLSDGD 553

Query: 683 EILSVETCTQE------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +LSV+    E      + ++L TK G  +RF +  +     + +VGVRGI L K D
Sbjct: 554 ALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEK-KKGAVGVRGIKLNKDD 609



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 12/101 (11%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN---- 850
           +    +   +E+G  K  S  +F+++ R          +K+++  AL++V P+       
Sbjct: 515 MTHDSLFFATEQGMLKIVSGTEFQVTKR------TVSATKLSDGDALLSVKPLKTEGGLI 568

Query: 851 --DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             D +IL + +G  +R  + E+    +   GV      KD+
Sbjct: 569 KPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDD 609


>gi|139438116|ref|ZP_01771669.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
 gi|133776313|gb|EBA40133.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
          Length = 706

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 206/747 (27%), Positives = 343/747 (45%), Gaps = 53/747 (7%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V + RA P++ DG KP HR++L+ M +MG+   ++  K A I G+ M K +PHG
Sbjct: 1   MPYAMSVNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGERQ-KSANIVGQTM-KLNPHG 57

Query: 90  NAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAERYTECRLQKAAHFLLDDL 146
           +AAIY+ + R+A  + +L    +E +GNFG         AA RYTE +L   +  +  D+
Sbjct: 58  DAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLSYAASRYTEAKLSPISAEIFKDI 117

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++I   NL EV    +  +
Sbjct: 118 DKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICGFNLNEVCTATMHYL 177

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
            +PD     L+E +  PDF TG  I+ R   ++    TG GS  IR              
Sbjct: 178 QDPDC---DLLEYMPMPDFSTGGEIIYRREEMEKIIETGLGSFQIRSRWRWIPEER---I 231

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I V EIPY      ++E+I +L +E ++ +IAD+RDE+D  G R+ I+LKRG   D ++ 
Sbjct: 232 IEVYEIPYTTKTDVIIERIVKLSKEGKVKEIADIRDETDLSGLRIAIDLKRGVDPDKLMA 291

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +LYR T+LQ  FS N   L    P    +  IL  +V +R E   RR  + L K  +R H
Sbjct: 292 KLYRSTTLQDSFSCNFNVLVDGYPRVMGVRQILHEWVKWRIESTRRRINFDLGKKSERLH 351

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L GL   + ++D+ + IIR +         LM+                          
Sbjct: 352 LLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMK-------------------------- 385

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E Q   + EL+L  +      +   ++  L  EI E  +ILSS   +  +I  EL
Sbjct: 386 GFDIDETQAEFVAELKLRNINEEYILNRTKDIAKLESEIAELEEILSSEENIKKVISDEL 445

Query: 506 LSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
            +V  +   PRRT  +E   ++++  E  +    + + +S  GY+K++         R  
Sbjct: 446 AAVNKKYVMPRRTGRIEPHEVIEVSLEPEVEEYPVTIMLSRDGYLKKMT-------DRVL 498

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           K  + +  +D D     F  S    +L F++   VYK KV           G  L   L 
Sbjct: 499 KKATTLKYKDGDKPFIEFPSSNTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLE 558

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +   E +  ++   + ++      V+F  ++G V R  LS ++      ++   +    +
Sbjct: 559 MEPDESVIWVIDPEDYKAD-----VLFVFENGRVVRVALSGYVTKTNRKRLKNAIYGGSK 613

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L  +   ++ DI L +   + + F  S ++     N+ GV+  +  KG  V ++     
Sbjct: 614 LLYAQVLKEDRDIALVSSDYRLMNFNTSLLKTKTTTNTQGVQAFTAKKGRSVTTVGTTEE 673

Query: 744 ADADYDERICYMKHMSAQRRLISGDTE 770
                     +          +  + +
Sbjct: 674 ILGAGVSAEKFTAQSLPSAGALMKEND 700


>gi|313633454|gb|EFS00280.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 407

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 185/403 (45%), Positives = 280/403 (69%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ +
Sbjct: 304 VELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           R+++ + KAR R H+L GL  A++ LDEV+++IR S +   A+
Sbjct: 364 RSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK 406


>gi|56159836|gb|AAV80729.1| gyrase subunit A [Bacillus subtilis]
          Length = 319

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 190/319 (59%), Positives = 256/319 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSLFSVNMVALNGYKPER 351
           LQ+ F +N++AL   +P+ 
Sbjct: 301 LQTSFGINLLALVDGQPKV 319


>gi|13810761|gb|AAK40025.1|AF272015_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 313

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 192/313 (61%), Positives = 251/313 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I
Sbjct: 121 DYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVAL 344
           +LQ+ F +N++AL
Sbjct: 301 ALQTSFGINLLAL 313


>gi|315928687|gb|EFV07969.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 537

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 182/578 (31%), Positives = 306/578 (52%), Gaps = 48/578 (8%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           ++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT + L KAR RAH+L GL I
Sbjct: 1   MESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+DEV+ +I+ S +  TAR  L+ +                            LSE+
Sbjct: 61  ALDNIDEVIALIKNSSDNNTARDSLVAK--------------------------FGLSEL 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L  +I+ EL  ++ + 
Sbjct: 95  QANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF 154

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V   
Sbjct: 155 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 214

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+GKA++N+++L   E+I  
Sbjct: 215 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMA 274

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  + + S +   + F TK+G V+R  LS++  I   G  A+ LD  DE+++     +
Sbjct: 275 IIPTTDFDESKS---LCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQR 331

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           + D +  T   + +                     +L   + V +   +L A       I
Sbjct: 332 DEDEIFATGGEENLENQEIENLDDE----------NLENEESVSTQGKMLFAVTKKGMCI 381

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
            +      +   +S     I   + +  + G +  E        EQ IL++S KG GKRT
Sbjct: 382 KFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN------DEQEILSISAKGIGKRT 435

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           ++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV +  IR 
Sbjct: 436 NAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRK 493

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 494 AGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 530


>gi|56159864|gb|AAV80743.1| gyrase subunit A [Bacillus sp. NRRL B-23970]
          Length = 323

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 191/322 (59%), Positives = 252/322 (78%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
            L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPH
Sbjct: 2   LLDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPH 61

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ K
Sbjct: 62  GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 121

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N
Sbjct: 122 DTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSEN 181

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 182 KDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 241

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY
Sbjct: 242 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 301

Query: 329 RYTSLQSLFSVNMVALNGYKPE 350
           + T+LQ+ F +NM+AL     +
Sbjct: 302 KQTALQTSFGINMLALVDGSRK 323


>gi|56159866|gb|AAV80744.1| gyrase subunit A [Bacillus sp. NRRL B-23982]
          Length = 320

 Score =  363 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 191/319 (59%), Positives = 251/319 (78%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
            L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPH
Sbjct: 2   LLDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPH 61

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ K
Sbjct: 62  GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 121

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N
Sbjct: 122 DTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSEN 181

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 182 KDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 241

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY
Sbjct: 242 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 301

Query: 329 RYTSLQSLFSVNMVALNGY 347
           + T+LQ+ F +NM+AL   
Sbjct: 302 KQTALQTSFGINMLALVDG 320


>gi|56159830|gb|AAV80726.1| gyrase subunit A [Bacillus subtilis]
 gi|56159838|gb|AAV80730.1| gyrase subunit A [Bacillus subtilis]
 gi|56159840|gb|AAV80731.1| gyrase subunit A [Bacillus subtilis]
          Length = 318

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 189/318 (59%), Positives = 255/318 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPER 351
           Q+ F +N++AL   +P+ 
Sbjct: 301 QTSFGINLLALVDGQPKV 318


>gi|331678181|ref|ZP_08378856.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
 gi|331074641|gb|EGI45961.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
          Length = 344

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 193/329 (58%), Positives = 249/329 (75%), Gaps = 1/329 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VI
Sbjct: 246 AEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNM 341
           E+KR A  +V+LN LY  T LQ L     
Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVLSVSTW 334


>gi|210630763|ref|ZP_03296587.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
 gi|210160359|gb|EEA91330.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 203/726 (27%), Positives = 344/726 (47%), Gaps = 53/726 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +T+  IT  ++ +Y+ YA++  + RA P++ DG KP HR++L+ M +MG+   ++  
Sbjct: 24  HSEVTAQPITKTLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGERQ- 81

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGDP--PAAER 129
           K A I G+ M K +PHG+AAIY+ + R+A  + +L    +E +GNFG         AA R
Sbjct: 82  KSANIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L      +  D+ KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++
Sbjct: 141 YTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASD 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSI 248
           I   NL EV    +  +++P      L+E +  PDF TG  I+ R   ++    TG GS 
Sbjct: 201 ICGFNLNEVCTATMHYLEDPSC---DLLEYMPMPDFSTGGEIIYRREEMERIIETGLGSF 257

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR          +   I V EIPY      ++++I +L +E ++ +IAD+RDE+D  G 
Sbjct: 258 QIRSRWR---WVPEERIIEVYEIPYTTKTDVIIDRIVKLSKEGKVREIADIRDETDLSGL 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+LKRG   + ++ +LYR T+LQ  FS N   L    P    +  IL  +VA+R + 
Sbjct: 315 RIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGYPRVMGVRQILHEWVAWRVQS 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR  + L K  +R H+L GL   + ++D+ + IIR +         LM+         
Sbjct: 375 TRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMK--------- 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + E Q   + EL+L  +      +   ++  L  EI E  
Sbjct: 426 -----------------GFDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELE 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
           +ILSS   +  +I+ EL +V  +   PRRT  +E   ++++  E  I    + + +S  G
Sbjct: 469 EILSSEDNIKKVIRDELAAVNKKYVMPRRTGRIEPSDVIEVSLEPEIEEYPVTIMLSREG 528

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++         R  K  + +  +D D     F  +    +L F++   VYK KV   
Sbjct: 529 YLKKMT-------DRVLKKAAALKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAF 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L   L +   E +   +   + ++      V+F  ++G   R  L+ ++
Sbjct: 582 EDTKSAQLGSYLPTDLEMEPDESVIWAIDPEDYKAD-----VLFIFENGRAVRVALAGYV 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 ++   +    ++L  +   ++ DI L +   + + F  S ++     N+ GV+ 
Sbjct: 637 TKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMSFNTSLLKTKTTTNTQGVQA 696

Query: 727 ISLAKG 732
            +  KG
Sbjct: 697 FTAKKG 702


>gi|329725098|gb|EGG61592.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU144]
          Length = 405

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 187/399 (46%), Positives = 278/399 (69%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            L +A  R H++ GL  A++ LDEV+ +IR S N +  +
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKMLK 403


>gi|56159860|gb|AAV80741.1| gyrase subunit A [Bacillus sp. NRRL B-23954]
          Length = 318

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 188/318 (59%), Positives = 251/318 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPER 351
           Q+ F +N++AL   +P+ 
Sbjct: 301 QTSFGINLLALVDGQPKV 318


>gi|284803679|emb|CBJ21245.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 317

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 188/317 (59%), Positives = 250/317 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSKREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRCGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|83953740|ref|ZP_00962461.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841685|gb|EAP80854.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 358

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 203/350 (58%), Positives = 260/350 (74%), Gaps = 7/350 (2%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + ++E           SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENDDEIPATRPVYDGPSVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+   K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+G
Sbjct: 61  RRIIYSMYEKGITHEKAYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A F+  DL K+TVDF  NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSAAAMRYTESRLDKVASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IV+ EI YQVNK+ M+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
             IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F  NM+ 
Sbjct: 301 DGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLR 350


>gi|284803673|emb|CBJ21242.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 316

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 188/316 (59%), Positives = 251/316 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I 
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 300

Query: 333 LQSLFSVNMVALNGYK 348
           LQ+ F +N++AL   +
Sbjct: 301 LQTSFGINLLALVDGQ 316


>gi|284803500|emb|CBJ15406.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|284803669|emb|CBJ21240.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 312

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 191/312 (61%), Positives = 250/312 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I 
Sbjct: 121 YQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTA 300

Query: 333 LQSLFSVNMVAL 344
           LQ+ F +N++AL
Sbjct: 301 LQTSFGINLLAL 312


>gi|56159854|gb|AAV80738.1| gyrase subunit A [Bacillus sp. NRRL B-23973]
 gi|56159856|gb|AAV80739.1| gyrase subunit A [Bacillus sp. NRRL B-23976]
          Length = 318

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 188/318 (59%), Positives = 252/318 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPER 351
           Q+ F +N++AL   +P+ 
Sbjct: 301 QTSFGINLLALVDGQPKV 318


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 210/818 (25%), Positives = 373/818 (45%), Gaps = 73/818 (8%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            ++I   D E+EK I  V     +  +YL YAI VI  RAI  + DG KP HR++L+ + +
Sbjct: 659  DYIEHFDNEQEKDIVKV-----LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHE 712

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    K  K A I G  M   + HG+ +IY+ L RMAQ  +L    + G+GNFG    
Sbjct: 713  SNLYN--KRTKSAHIVGSNM-SLNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTS 769

Query: 123  DP--PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                 A  RYTE             + K+ VDF PN+DG  +EP++L   +PNVLVN   
Sbjct: 770  KSLQNAHMRYTEAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANK 829

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
            GIAVGMA+  P+ NL EV D  +A I + +I +      +  PDF TG  I+     +  
Sbjct: 830  GIAVGMASATPSFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQ 886

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR---IVDI 296
             Y TG+GS+ +R    ++       +I+VTEIPY  N+ ++++ I  L RE +   I +I
Sbjct: 887  IYETGQGSVTLRAKYGVKD-----NEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNI 941

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
             ++ D +DR+G  + I++K+  + ++++ +LY  T LQ  +S+NM  +     P   ++ 
Sbjct: 942  TNVIDSTDRKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIK 1001

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL  ++ FR   + R + Y       + H+L    I + ++D +V I R + + +   +
Sbjct: 1002 RILDEWLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIK 1061

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-R 474
            +L                               + + Q   +  ++L +L      +I  
Sbjct: 1062 QL--------------------------QLYFKIDQEQAEYVSNIKLKKLNKNNIIEITE 1095

Query: 475  NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDC 532
             ++ +L  EI +  +I +  +R+  II Q+L +++D+   PR+T I  VE +  +  ED 
Sbjct: 1096 QQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPSVTLEDI 1155

Query: 533  IVRE-DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             + + +  + ++   Y+K+  +                 ++D+D +      +    +L 
Sbjct: 1156 KIEDFNPTLVLTEQQYIKKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLL 1204

Query: 592  FSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVV 649
            F++ G V   KV+ L    P   G  L N+L   L   E +  I    + + S     VV
Sbjct: 1205 FTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEEVIYISTTKDYKGS-----VV 1259

Query: 650  FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
               ++G + R  L  +             ++  +I+S++  T + DILL ++ G+ +   
Sbjct: 1260 SVFENGYIARTDLQTYKPKQNRQIPMSAYNTDSKIVSIQLITNDTDILLVSQEGKSLIIN 1319

Query: 710  ISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             S IR    RN+ GV G+ +  + +++I+  I +  D +++      K        ++ +
Sbjct: 1320 TSQIRPTKSRNTQGVSGMKIDIETNKIIASIIGVTVDDNFNIETEKGKSKFIMLNDVAPN 1379

Query: 769  TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
             +E  +     +     +       K  +   LT  E 
Sbjct: 1380 GKESMTEYLKGNRNTQGNFIYNTRQKNDKVIKLTKQEN 1417



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 10/171 (5%)

Query: 728  SLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             L   D+++      + D      ++    ++ +            +         +E +
Sbjct: 1183 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLEND 1242

Query: 785  ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     K  +  +++V E G+  RT    ++      K  R   +S  N    +V++
Sbjct: 1243 EEVIYISTTKDYKGSVVSVFENGYIARTDLQTYKP-----KQNRQIPMSAYNTDSKIVSI 1297

Query: 845  FPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
              + ++  I+LVS +G  + +  ++IR   SR T+GV       +  ++++
Sbjct: 1298 QLITNDTDILLVSQEGKSLIINTSQIRPTKSRNTQGVSGMKIDIETNKIIA 1348


>gi|40786593|gb|AAR89868.1| putative DNA gyrase/topoisomerase A subunit [Oryza sativa Japonica
           Group]
          Length = 418

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 184/335 (54%), Positives = 242/335 (72%), Gaps = 5/335 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 79  KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTE
Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198

Query: 133 CRLQKAAHFLLD---DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           CRL     F LD         VDF PN+D S +EP +L AR P++L+NG  GIAVGMATN
Sbjct: 199 CRLDVGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATN 258

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V
Sbjct: 259 IPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVV 318

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G
Sbjct: 319 MRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSG 378

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            RVVIELKRGA   ++LN LYR+T+LQS FS NMV
Sbjct: 379 MRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMV 413


>gi|56159852|gb|AAV80737.1| gyrase subunit A [Bacillus sp. NRRL B-23977]
          Length = 317

 Score =  360 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 188/317 (59%), Positives = 252/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 367

 Score =  360 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 252/367 (68%), Positives = 303/367 (82%), Gaps = 1/367 (0%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +Q+ F  NMVALNG KPE+ TL+ +L+AFV FREEVV RRTK+LL KAR+RAHVLVGLAI
Sbjct: 1   MQTSFGCNMVALNGGKPEQLTLLDMLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLAI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           AVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE 
Sbjct: 61  AVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEE 120

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE 
Sbjct: 121 QARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEF 180

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
            TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  R
Sbjct: 181 GTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTR 240

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           DEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITT
Sbjct: 241 DEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLAPGERITT 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCT 691
           I+P PEDE+SW+NL V+F+T  G VRRNKLSDF+ +NR+GKIAMKL +  DEILSVETCT
Sbjct: 301 ILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLEEEGDEILSVETCT 360

Query: 692 QENDILL 698
           + +D+LL
Sbjct: 361 EHDDVLL 367



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 86/206 (41%), Gaps = 12/206 (5%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + LA+   +    I    +   +E   Y+  +S++ R+ 
Sbjct: 107 HRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQ 166

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+T+++++      + +     E   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 167 TIVKDELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 226

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG         + +  L   F VN +  ++  S +G + +  V  + I +  ++G
Sbjct: 227 QRRGGKGRSGMTTRDEDFVSRL---FVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRG 283

Query: 880 VVIFS---TAKDERVVSVERIRESEI 902
             + +    A  ER+ ++  + E E 
Sbjct: 284 KALINMLPLAPGERITTILPLPEDEA 309



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 15/199 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F    R+  +   L+  DE    +   +E+ ++  + LG   R P++  R    R   
Sbjct: 178 DEFGTPRRTEIVDGGLEMDDE----DLIAREDMVVTVSHLGYIKRVPLTTYRA-QRRGGK 232

Query: 723 GVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKN---- 777
           G  G++    D V  + +V  H    +      +      R  I   T    +L N    
Sbjct: 233 GRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPL 292

Query: 778 -DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   I      E       ++  + +G  +R    DF   NR+GK   A  + +  
Sbjct: 293 APGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGK--IAMKLEE-- 348

Query: 837 EIGALVAVFPVNDNDQIIL 855
           E   +++V    ++D ++L
Sbjct: 349 EGDEILSVETCTEHDDVLL 367


>gi|56159828|gb|AAV80725.1| gyrase subunit A [Bacillus subtilis]
          Length = 316

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 189/316 (59%), Positives = 254/316 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVNMVALNGYKPE 350
           + F +N++AL   +P+
Sbjct: 301 TSFGINLLALVDGQPK 316


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 206/783 (26%), Positives = 365/783 (46%), Gaps = 73/783 (9%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            ++I   D E+EK I  V     +  +YL YAI VI  RAI  + DG KP HR++L+ + +
Sbjct: 659  DYIEHFDNEQEKDIVKV-----LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHE 712

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
              +    K  K A I G  M   + HG+ +IY+ L RMAQ  +L    + G+GNFG    
Sbjct: 713  SNLYN--KRTKSAHIVGSNM-SLNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTS 769

Query: 123  DP--PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                 A  RYTE             + K+ VDF PN+DG  +EP++L   +PNVLVN   
Sbjct: 770  KSLQNAHMRYTEAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANK 829

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
            GIAVGMA+  P+ NL EV D  +A I + +I +      +  PDF TG  I+     +  
Sbjct: 830  GIAVGMASATPSFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQ 886

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR---IVDI 296
             Y TG+GS+ +R    ++       +I+VTEIPY  N+ ++++ I  L RE +   I +I
Sbjct: 887  IYETGQGSVTLRAKYEVKD-----NEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNI 941

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
             ++ D +DR+G  + I++K+  + ++++ +LY  T LQ  +S+NM  +     P   ++ 
Sbjct: 942  TNVIDSTDRKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIK 1001

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL  ++ FR   + R + Y       + H+L    I + ++D +V I R + + +   +
Sbjct: 1002 RILDEWLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIK 1061

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-R 474
            +L                               + + Q   +  ++L +L      +I  
Sbjct: 1062 QL--------------------------QLYFKIDQEQAEYVSNIKLKKLNKNNIIEITE 1095

Query: 475  NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDC 532
             ++ +L  EI +  +I +  +R+  II Q+L +++D+   PR+T I  VE +  +  ED 
Sbjct: 1096 QQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPSVTLEDI 1155

Query: 533  IVRE-DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             + + +  + ++   Y+K+  +                 ++D+D +      +    +L 
Sbjct: 1156 KIEDFNPTLVLTEQQYIKKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLL 1204

Query: 592  FSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVV 649
            F++ G V   KV+ L    P   G  L N+L   L   E++  I      + S     V+
Sbjct: 1205 FTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNYKGS-----VI 1259

Query: 650  FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
               ++GNV R  L  +             ++  +++S+   T + +ILL ++ G+ +   
Sbjct: 1260 TVFENGNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITDDTNILLVSQEGKALIIN 1319

Query: 710  ISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             S IR    RN+ GV G+ +  + ++VI   I +  + ++D +    K        I+ +
Sbjct: 1320 TSQIRPTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKTEKSKSKFIMLDDIAPN 1379

Query: 769  TEE 771
             ++
Sbjct: 1380 GKQ 1382



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 10/171 (5%)

Query: 728  SLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             L   D+++      + D      ++    ++ +            +         +E +
Sbjct: 1183 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLEND 1242

Query: 785  ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     K  +  ++TV E G   R     ++      K  R   +   N    LV++
Sbjct: 1243 EKVIYISTTKNYKGSVITVFENGNVARIDLKQYK-----TKQNRQVPMDAYNTDSKLVSI 1297

Query: 845  FPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
              + D+  I+LVS +G  + +  ++IR   SR T+GV       +  +V+ 
Sbjct: 1298 SVITDDTNILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEHNKVIG 1348



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 99/250 (39%), Gaps = 20/250 (8%)

Query: 663  SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              +I+ NR    + KL   D+IL    C  ++D+LL T  G  +   +  +      ++ 
Sbjct: 1169 QQYIKKNRVFSQSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKP-STY 1227

Query: 723  GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            G    +L  G+ + +   V++     + +   +              +  T       ++
Sbjct: 1228 GDFLPNLL-GEHLENDEKVIYISTTKNYKGSVITVFENGNVARIDLKQYKTKQNRQVPMD 1286

Query: 783  GNISEERCQELK--LKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATDV-SKINEI 838
               ++ +   +     +  IL VS++G     ++   R + +R+ +G+    + ++ N++
Sbjct: 1287 AYNTDSKLVSISVITDDTNILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEHNKV 1346

Query: 839  GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-----------RATKGVVIFSTA- 886
               +    V DN  I   ++K     + +++I               R T+G  I++T  
Sbjct: 1347 IGSIIGVTVEDNFDIK--TEKSKSKFIMLDDIAPNGKQSMTEYLKGNRNTQGNFIYNTRQ 1404

Query: 887  KDERVVSVER 896
            K ++V+ + R
Sbjct: 1405 KHDKVIELIR 1414


>gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 401

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 169/401 (42%), Positives = 252/401 (62%), Gaps = 10/401 (2%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    + +I+ P   LD L++I++GPD+PT A +I+ R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVI 312
             E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++
Sbjct: 246 TKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
                   + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V R
Sbjct: 301 PRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           R  Y L K   R H+L GL +A  N+DEV+ IIR    P+ 
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401


>gi|325068644|ref|ZP_08127317.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 373

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 175/369 (47%), Positives = 241/369 (65%), Gaps = 2/369 (0%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
              +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +MG
Sbjct: 6   TTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQMDRMG 65

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+D D 
Sbjct: 66  LRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGSLD-DG 124

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL  +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG  GIAV
Sbjct: 125 PAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGAAGIAV 184

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ AY TG
Sbjct: 185 GMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIVGLDGIREAYRTG 244

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+ D +D
Sbjct: 245 RGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDVADLTD 304

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L+ FV 
Sbjct: 305 RKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELLEVFVR 364

Query: 364 FREEVVVRR 372
            R  VV RR
Sbjct: 365 HRLTVVTRR 373


>gi|221482404|gb|EEE20752.1| DNA gyrase subunit A, putative [Toxoplasma gondii GT1]
          Length = 1594

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 199/544 (36%), Positives = 312/544 (57%), Gaps = 57/544 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + ++  +      +E++ S+L YA + IL RA+PD+RDGLKPVHRR+++ M Q+ +  + 
Sbjct: 267 DAKDVALLDTQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHLHPSG 326

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +  R  LIEG GNFGSVDGDPPAA R
Sbjct: 327 SFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGSVDGDPPAAMR 386

Query: 130 YTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTECRL +      L +L    V FRPN+D + +EPVV  A  P VL+ G  GIAVGM+T
Sbjct: 387 YTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGMST 446

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I  AY  GRG +
Sbjct: 447 QIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIPGAYKEGRGRV 506

Query: 249 VIRGVSHIE---------------------------KTSGDRE---QIVVTEIPYQVNKA 278
           ++RG  H+E                                R+   ++V+TE+PY VNK+
Sbjct: 507 LLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRHVRNGRKNERRLVITELPYGVNKS 566

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L ++T+LQ    
Sbjct: 567 TVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVYIP 626

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           ++++AL  G KP RF+L  +L +++AFR   + R       + + R+H+L GL  AV+ +
Sbjct: 627 MHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVSLM 686

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+VV+ +R S + + A+++L +                           +  S  Q +A+
Sbjct: 687 DDVVKTVRESLSADDAKQKLTE-------------------------PPLGFSPAQAQAL 721

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L L L+RLT L R  +  E  +    + E   +L+    +  ++ +EL + K     PR+
Sbjct: 722 LRLTLSRLTRLERRQLEEEAKAQKDRLSELASLLAHDREIYELMVEELQAHKTRHKAPRK 781

Query: 518 TRIV 521
           T+++
Sbjct: 782 TKVL 785



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 182/569 (31%), Gaps = 109/569 (19%)

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL-GR 470
             AR +      +A    +  + +          G    +  Q +        R  G+  R
Sbjct: 852  KARTDARHEEGSAGQALEETEGLG----GFEEKGRDDRTSTQRKTFAGQDTWRKDGIVDR 907

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
                 E       +   ++  S+ +      +       +E     R    E + +M  E
Sbjct: 908  QKRLKEEGETETLVSRDVNESSTEAETDASEEDREGDSSEEDQDDARVPFGE-IKNMNKE 966

Query: 531  DCIVREDMVVTVSHLGYVKRVPLSVY-------------------------------RAQ 559
            D I  +  VV +S    V+R+PLSVY                                AQ
Sbjct: 967  DFISNQRNVVLLSAPALVRRLPLSVYPTLRRGALGVRSLSRSLASAESPDLERDEADEAQ 1026

Query: 560  RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
             RG KG+S  V      +  ++   T   +LF S+ G+V     +R+P+GS  +RG +L 
Sbjct: 1027 TRGVKGKSAAVGASS--LQGVWSCWTKDRLLFLSANGYVSMLPAYRVPLGSRISRGTSLP 1084

Query: 620  NILSLNQGERITTIMPFPEDESSWNNLYVVFATK------------HGNVRRNKLSDFIQ 667
             +L     ++   +    E  ++   L    A +                +   +     
Sbjct: 1085 QLL-FEGWKKPAALRRLGESAAAAGALAEDAANREKKREEKERTLLREAAQVAAVLAVPP 1143

Query: 668  INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RG 726
              +  K A  +    E  S     +   +++ T  G+  +  +   R+   R    V + 
Sbjct: 1144 PTQREK-ARGVRQASE--SSGKSRKAKFLVVVTDQGRIAKIKLK--RILGRRCETKVKKL 1198

Query: 727  ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +SL +GD + + A++              +     R  +SG  +EI  L+ + S      
Sbjct: 1199 LSLVQGDSIRAAALLEE------------EVEPLARGRVSGAGKEIKHLRGNGSECNATD 1246

Query: 787  EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            EER    K +E+     +EK   +                    D     E         
Sbjct: 1247 EERGARKKDREEEDEETTEKEEEEEDDE-------------EEEDEEDEEEEEEEAGSRL 1293

Query: 847  VNDNDQ-------------------------IILVSDKGTLIRVPVNEIRIASRA-TKGV 880
            V D D                          I++V+ +G  +R P + +R +  + T+GV
Sbjct: 1294 VEDEDDMGGEGAEGEGTDLKSEEKRDTNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGV 1353

Query: 881  VIFSTAKDERVVSVERIRESEIVDEAEST 909
                    + V SV  +      DEA++ 
Sbjct: 1354 RAIRLRAGDSVASVAVVPPEVKEDEAKTE 1382



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 22/144 (15%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V              
Sbjct: 1325 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPE----------- 1373

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     +  D  +  S K   S E     E   E    E  +L V+  GFGKR    
Sbjct: 1374 ---------VKEDEAKTESRKEGDSDETQSKNESSNE--KAEPSLLIVTAAGFGKRIRVS 1422

Query: 816  DFRISNRSGKGIRATDVSKINEIG 839
              R+  R G G+R   + K  ++ 
Sbjct: 1423 ALRMQRRRGVGVRVIRLVKRKKVA 1446



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 95/308 (30%), Gaps = 50/308 (16%)

Query: 641  SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETCTQE----- 693
             S    ++V  T  G + + KL   +      K+   L     D I +     +E     
Sbjct: 1162 KSRKAKFLVVVTDQGRIAKIKLKRILGRRCETKVKKLLSLVQGDSIRAAALLEEEVEPLA 1221

Query: 694  -NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
               +    K  + +R   S         +   RG      ++          + + DE  
Sbjct: 1222 RGRVSGAGKEIKHLRGNGSEC-----NATDEERGARKKDREEEDEETTEKEEEEEDDEEE 1276

Query: 753  CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKR 811
               +    +         E          EG  ++ + +E +      I+ V+ +G G R
Sbjct: 1277 EDEEDEEEEEEEAGSRLVEDEDDMGGEGAEGEGTDLKSEEKRDTNSPSIVIVTRQGMGLR 1336

Query: 812  TSSYDFRISNR-SGKGIRATDVSKINEIGALVAVFPVNDNDQ------------------ 852
              +   R S     +G+RA  +   + + ++  V P    D+                  
Sbjct: 1337 FPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESRKEGDSDETQSKN 1396

Query: 853  ----------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                      +++V+  G   R+ V+ +R+  R   GV +    K ++V         E 
Sbjct: 1397 ESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKRKKVA-------REG 1449

Query: 903  VDEAESTE 910
             D   S E
Sbjct: 1450 DDRGLSDE 1457


>gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
 gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
          Length = 456

 Score =  358 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 189/490 (38%), Positives = 284/490 (57%), Gaps = 41/490 (8%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D     AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG
Sbjct: 61  PDDPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GI 237
             GIAVGMAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  +
Sbjct: 121 VTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVEL 180

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 181 EKIYRSGRGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVE 235

Query: 298 DLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L
Sbjct: 236 DLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGL 295

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  +++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P+   
Sbjct: 296 VQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAV- 354

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM R                            L+++Q  AIL+ +L  L  L    IR
Sbjct: 355 --LMAR--------------------------FDLTDIQADAILDTKLRHLAKLEEMKIR 386

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDC 532
            E + L  E K+  ++L S  RL  ++K+E+ +  D+    RR+ +V  E    + + D 
Sbjct: 387 GEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDL 446

Query: 533 IVREDMVVTV 542
           +  E + V +
Sbjct: 447 MPSEAITVVL 456


>gi|56159868|gb|AAV80745.1| gyrase subunit A [Bacillus sp. NRRL B-41004]
          Length = 320

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 187/312 (59%), Positives = 247/312 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRXLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 181 DITIQELMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 241 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 300

Query: 330 YTSLQSLFSVNM 341
            T+LQ+ F +  
Sbjct: 301 QTALQTSFGITC 312


>gi|160905586|gb|ABX52351.1| gyrase subunit alpha [Bacillus sonorensis]
          Length = 309

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 193/309 (62%), Positives = 248/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  AMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGEVVDG +AV  NPDI L  
Sbjct: 121 NYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVVDGVLAVSKNPDISLAE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VTEIPYQV
Sbjct: 181 LMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVTEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148448|dbj|BAK20073.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148450|dbj|BAK20074.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148462|dbj|BAK20080.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148468|dbj|BAK20083.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 308

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 187/308 (60%), Positives = 249/308 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSLFSVN 340
           LQ+ F +N
Sbjct: 301 LQTSFGIN 308


>gi|284049783|emb|CBJ15409.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 185/309 (59%), Positives = 246/309 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMV 342
           Q+ F +N++
Sbjct: 301 QTSFGINLL 309


>gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 465

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 195/494 (39%), Positives = 290/494 (58%), Gaps = 54/494 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 359

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 360 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLN 419

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 420 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 450

Query: 457 ILELRLARLTGLGR 470
           IL +RL  L  L  
Sbjct: 451 ILNMRLRSLRKLEE 464


>gi|160905556|gb|ABX52336.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905654|gb|ABX52385.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 190/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 470

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 195/494 (39%), Positives = 290/494 (58%), Gaps = 54/494 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + EE  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGEE-HIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + ++EKIAEL+  K++  + D+RDES      V+    R    ++++  L++ T L+S  
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRV 364

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NM  L +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  N
Sbjct: 365 SLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLN 424

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P   ++ELM+                             L++VQ  +
Sbjct: 425 LDEVIRIIREEDEP---KQELMR--------------------------AFELTDVQAES 455

Query: 457 ILELRLARLTGLGR 470
           IL +RL  L  L  
Sbjct: 456 ILNMRLRSLRKLEE 469


>gi|332148454|dbj|BAK20076.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148464|dbj|BAK20081.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148466|dbj|BAK20082.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 307

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 186/307 (60%), Positives = 248/307 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSLFSVN 340
           Q+ F +N
Sbjct: 301 QTSFGIN 307


>gi|284049787|emb|CBJ16552.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 314

 Score =  354 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 186/314 (59%), Positives = 247/314 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYKPER 351
            +N++AL   +P+ 
Sbjct: 301 GINLLALVDGQPKV 314


>gi|160905644|gb|ABX52380.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905662|gb|ABX52389.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV DNPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSDNPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905572|gb|ABX52344.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905578|gb|ABX52347.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905584|gb|ABX52350.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905634|gb|ABX52375.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 188/309 (60%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148498|dbj|BAK20098.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 304

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 185/304 (60%), Positives = 246/304 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSL 336
           LQ+ 
Sbjct: 301 LQTS 304


>gi|160905606|gb|ABX52361.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905668|gb|ABX52392.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  353 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905544|gb|ABX52330.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905546|gb|ABX52331.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905548|gb|ABX52332.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905550|gb|ABX52333.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905554|gb|ABX52335.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905562|gb|ABX52339.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905564|gb|ABX52340.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905568|gb|ABX52342.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905592|gb|ABX52354.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905594|gb|ABX52355.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905596|gb|ABX52356.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905598|gb|ABX52357.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905600|gb|ABX52358.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905602|gb|ABX52359.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905604|gb|ABX52360.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905620|gb|ABX52368.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905622|gb|ABX52369.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905624|gb|ABX52370.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905636|gb|ABX52376.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905638|gb|ABX52377.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905640|gb|ABX52378.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905642|gb|ABX52379.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905646|gb|ABX52381.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905648|gb|ABX52382.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905650|gb|ABX52383.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905656|gb|ABX52386.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905658|gb|ABX52387.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905660|gb|ABX52388.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905670|gb|ABX52393.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905676|gb|ABX52396.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905678|gb|ABX52397.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905680|gb|ABX52398.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  353 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 188/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905614|gb|ABX52365.1| gyrase subunit alpha [Bacillus tequilensis]
          Length = 309

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV ++PDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESPDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905552|gb|ABX52334.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905608|gb|ABX52362.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905616|gb|ABX52366.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905618|gb|ABX52367.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905626|gb|ABX52371.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905628|gb|ABX52372.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|255030550|ref|ZP_05302501.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 323

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 185/318 (58%), Positives = 241/318 (75%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQL 327
           +VIE++R  SA VI+N  
Sbjct: 303 IVIEVRRDISASVIVNNF 320


>gi|13810775|gb|AAK40032.1|AF272022_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVN 340
           + F +N
Sbjct: 301 TSFGIN 306


>gi|62946516|gb|AAY22401.1| GyrA [Bacillus subtilis]
          Length = 311

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 186/311 (59%), Positives = 249/311 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYK 348
            +N++AL   +
Sbjct: 301 GINLLALVDGQ 311


>gi|56159870|gb|AAV80746.1| gyrase subunit A [Bacillus sp. NRRL B-23956]
          Length = 312

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 189/312 (60%), Positives = 247/312 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVALNGY 347
            F +NM+AL   
Sbjct: 301 SFGINMLALVDG 312


>gi|332148446|dbj|BAK20072.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148452|dbj|BAK20075.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148456|dbj|BAK20077.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148458|dbj|BAK20078.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148460|dbj|BAK20079.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148470|dbj|BAK20084.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148472|dbj|BAK20085.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148474|dbj|BAK20086.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148476|dbj|BAK20087.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148478|dbj|BAK20088.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 306

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVN 340
           + F +N
Sbjct: 301 TSFGIN 306


>gi|284803675|emb|CBJ21243.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 184/309 (59%), Positives = 245/309 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+ N+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFLNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMV 342
           Q+ F +N++
Sbjct: 301 QTSFGINLL 309


>gi|145642256|ref|ZP_01797822.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273061|gb|EDK12941.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 316

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 184/322 (57%), Positives = 241/322 (74%), Gaps = 7/322 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADV 322
           D S+++G R+ I++KR A    
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGKW 315


>gi|806907|gb|AAC43991.1| PAR-C [Mycoplasma genitalium]
          Length = 479

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 170/507 (33%), Positives = 272/507 (53%), Gaps = 29/507 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +++   +   +I +    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   DQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTT 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+++IYDA+ RM+Q W      +   GN GSVDGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S +EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E++D     ID P+ +L  +++I++GPDFPTG  +     + + Y  G+G  +
Sbjct: 182 IAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+    +   + +  QI +T+I Y+  KA ++++I E++ + ++  I  + D SDR G R
Sbjct: 242 IQAKYEV---NKNLNQIEITQIRYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIR 298

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I+ K    A+ I+  L+++T LQ  F++N   +    P +  L+  L  F+ F  E++
Sbjct: 299 IIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELI 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + + KY L  A  R  +++GL  A++ +D+++++IR + +   AR +L+           
Sbjct: 359 INKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLIDN--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT     ++  E N L   +     
Sbjct: 410 -----------------FKFTFNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQ 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPR 516
           +++S      ++K++    K +    R
Sbjct: 453 LIASEKARNKLLKKQFEGYKKQFHQQR 479


>gi|332148486|dbj|BAK20092.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 304

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 184/304 (60%), Positives = 243/304 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I 
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 300

Query: 333 LQSL 336
           LQ+ 
Sbjct: 301 LQTS 304


>gi|160905558|gb|ABX52337.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905574|gb|ABX52345.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905576|gb|ABX52346.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905580|gb|ABX52348.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905582|gb|ABX52349.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905630|gb|ABX52373.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905632|gb|ABX52374.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|293627261|gb|ADE58305.1| DNA gyrase alpha subunit [Bacillus subtilis subsp. inaquosorum]
          Length = 309

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905588|gb|ABX52352.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905590|gb|ABX52353.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905664|gb|ABX52390.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|13810767|gb|AAK40028.1|AF272018_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 305

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 190/305 (62%), Positives = 245/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NPDI L  LMEI
Sbjct: 121 SEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEI 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++TEIPYQVNKA 
Sbjct: 181 IPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|332148494|dbj|BAK20096.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 303

 Score =  351 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 184/303 (60%), Positives = 245/303 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSL 336
           Q+ 
Sbjct: 301 QTS 303


>gi|56159834|gb|AAV80728.1| gyrase subunit A [Bacillus subtilis]
          Length = 317

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 184/310 (59%), Positives = 248/310 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMA
Sbjct: 8   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 67

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS 
Sbjct: 68  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 127

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LME+I 
Sbjct: 128 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIP 187

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++
Sbjct: 188 GPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLI 247

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N+
Sbjct: 248 EKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL 307

Query: 342 VALNGYKPER 351
           +AL   +P+ 
Sbjct: 308 LALVDGQPKV 317


>gi|160905570|gb|ABX52343.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITISE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + I++TS  +E+IVVTEIPYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVTEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|129921061|gb|ABO31934.1| GyrA [Bacillus amyloliquefaciens]
          Length = 309

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 245/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++ KIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIGKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|284803677|emb|CBJ21244.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 245/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F + ++AL
Sbjct: 301 SFGIKLLAL 309


>gi|284049789|emb|CBJ16553.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTARQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905566|gb|ABX52341.1| gyrase subunit alpha [Bacillus vallismortis]
          Length = 309

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGL+PVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLQPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQD 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905610|gb|ABX52363.1| gyrase subunit alpha [Bacillus mojavensis]
 gi|160905652|gb|ABX52384.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|218134382|ref|ZP_03463186.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989767|gb|EEC55778.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 180/341 (52%), Positives = 244/341 (71%), Gaps = 5/341 (1%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRILF M+++    +
Sbjct: 2   DEHIFDKVHDVDLQKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY+AL ++AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + +  +L D+ K+TVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFIPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +IDN      D  ++ ++ I++GPDFPTGA+ILG+ GI+ AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDNQVEEDRDTTIEEILNIVKGPDFPTGAMILGKMGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVREK+I  I DLRDES
Sbjct: 242 GRGKIRVRAVTDIEPMANGKNRIVVTELPYMVNKAKLIEKIAELVREKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           DR G R+ IEL+R  + +++LNQL      +    +  + L
Sbjct: 302 DRSGMRISIELRRDVNPNIVLNQLLSIHRCRIHLVLLCLHL 342


>gi|319826932|gb|ADV74760.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 186/308 (60%), Positives = 247/308 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 300

Query: 340 NMVALNGY 347
           N++AL   
Sbjct: 301 NLLALVDG 308


>gi|327335378|gb|AEA49884.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 185/307 (60%), Positives = 248/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +N++AL
Sbjct: 301 GINLLAL 307


>gi|160905672|gb|ABX52394.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148484|dbj|BAK20091.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 302

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 184/302 (60%), Positives = 244/302 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SL 336
           + 
Sbjct: 301 TS 302


>gi|160905666|gb|ABX52391.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|47079978|gb|AAT10175.1| gyrase A [Bacillus mojavensis]
          Length = 309

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 248/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|160905560|gb|ABX52338.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 YFGINMLAL 309


>gi|332148480|dbj|BAK20089.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148490|dbj|BAK20094.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 183/302 (60%), Positives = 240/302 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 300

Query: 335 SL 336
           + 
Sbjct: 301 TS 302


>gi|13810777|gb|AAK40033.1|AF272023_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|13810779|gb|AAK40034.1|AF272024_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 309

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 248/309 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 300

Query: 341 MVALNGYKP 349
           ++AL   +P
Sbjct: 301 LLALVDGQP 309


>gi|56112326|gb|AAV71141.1| GyrA [Bacillus amyloliquefaciens]
          Length = 311

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 185/311 (59%), Positives = 246/311 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            II GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 GIIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYK 348
            +N++AL   +
Sbjct: 301 GINLLALVDGQ 311


>gi|28916618|gb|AAO59542.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 185/306 (60%), Positives = 246/306 (80%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+  +LQ+ F 
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQAALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|50379830|gb|AAT76293.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 183/319 (57%), Positives = 246/319 (77%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTS 332
           +K+G   +++LN+LY+YT 
Sbjct: 302 VKKGEEPELVLNKLYKYTD 320


>gi|284803667|emb|CBJ21239.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 304

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 184/303 (60%), Positives = 240/303 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFS 338
            F 
Sbjct: 301 SFG 303


>gi|28916592|gb|AAO59529.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|28916600|gb|AAO59533.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +L RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SLVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|284049779|emb|CBJ15407.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 308

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 185/308 (60%), Positives = 245/308 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALN 345
            +N++AL 
Sbjct: 301 GINLLALV 308


>gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 623

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 188/618 (30%), Positives = 292/618 (47%), Gaps = 61/618 (9%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L + A  L++ L +D+VDFRP YDG+ +EP V+ +  PN+L NG  GIAVGMA
Sbjct: 1   MRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRG 246
           T+IP HNLGE+ D    +I  PD D+D L+  + GPDFPTG V++  +  I  AY TG+G
Sbjct: 61  TSIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R    +EK S    QIV+TEIPYQV KA ++EKIAEL+ EK++  +AD+RDES   
Sbjct: 121 SFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAED 180

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAF 361
              V+    R   A++++ QL+R T L+S FS+NM  L         P    L  +L+AF
Sbjct: 181 IRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRAF 240

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  V+ RRT++ L K   R  VL G     A+LD+V++IIRF+  P   + EL++  
Sbjct: 241 LDHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEP---KAELIK-- 295

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                   T  LSEVQ  AIL +RL  L  L   +I+ E   L 
Sbjct: 296 ------------------------TFKLSEVQAEAILNMRLRSLNKLQELEIKTEHAELS 331

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLD--MEDEDCIV 534
            E  +   +L+   R    I  +   ++           RRT + +      +  E  + 
Sbjct: 332 AEKADLEALLADEGRRWTTIAAQNAEIRKAFGGATALGKRRTELGDAPSAVVVPIEAYVE 391

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE + + +S  G++        RA +        +  ++ D +  L    T   +L F++
Sbjct: 392 REAITMVLSEKGWI--------RALKGHSDSPDALKFKEGDQLGHLLKAWTTDKILVFAT 443

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y     +LP G  +  G+ L  ++ L     I  ++             ++ AT  
Sbjct: 444 DGRFYTIGGDKLPSG--RGHGEPLRLMIDLAGDVDIAAVLVHK------PGRKLLVATNS 495

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
                 + ++ +   R+GK+ +     ++        + + + +  +  + + F    I 
Sbjct: 496 DRGFVVEENEVLAQTRAGKMVLNCGDGEK-AKFCLPFEGDAVAVIGENRKLLVFMADEIP 554

Query: 715 VFAGRNSVGVRGISLAKG 732
           V       GV       G
Sbjct: 555 VMT--RGRGVILQKYRDG 570


>gi|50379887|gb|AAT76296.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 183/319 (57%), Positives = 246/319 (77%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTS 332
           +K+G   +++LN+LY+YT 
Sbjct: 302 VKKGEEPELVLNKLYKYTD 320


>gi|319826934|gb|ADV74761.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 300

Query: 340 NMVALN 345
           N++AL 
Sbjct: 301 NLLALV 306


>gi|332148488|dbj|BAK20093.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148496|dbj|BAK20097.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 183/302 (60%), Positives = 241/302 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 300

Query: 335 SL 336
           + 
Sbjct: 301 TS 302


>gi|332148482|dbj|BAK20090.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 183/302 (60%), Positives = 241/302 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+  
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYHD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLR+ESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGIPDLREESDRNGMRIVIEIRRDANAHVILNHLYKQTALQT 300

Query: 336 LF 337
            F
Sbjct: 301 SF 302


>gi|80159786|ref|YP_398530.1| putative DNA gyrase A subunit [Clostridium phage c-st]
 gi|78675376|dbj|BAE47798.1| putative DNA gyrase A subunit [Clostridium phage c-st]
          Length = 752

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 189/801 (23%), Positives = 344/801 (42%), Gaps = 59/801 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +   +Q+ ++ +A  VI+   +P + DGL PV+R++L+ + +  V  +K Y+K  
Sbjct: 1   MIKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLL 58

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD--PPAAERYTEC 133
           R S   M  Y+  G+  +  A+  MA +  ++   ++ +G+FG         A+ RY EC
Sbjct: 59  RASSMSMV-YYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKGASPRYIEC 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L ++ K+ V  + N+D +  EP+VL +  PNVL+N    IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL +  D  +  I   DID    ++II+ PD P G  VI  +      Y TG GS  + G
Sbjct: 177 NLIDTCDSIINYIQTKDIDKS--IDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +++         + EIPY+     +  K+ E   +    +I D+ D SDR+G ++ I
Sbjct: 235 KYKMKQCDK-YNIFSIYEIPYETTIEDIENKLREKCYKGLFKEIIDIHDASDRKGIQLDI 293

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVV 370
            LK+  +    +++L +YT  +S F  N   + L+G  P   +L  I   ++  R   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYTPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
               Y + K  +  + L GL I    LD+ ++IIR S   + A  EL++           
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIK----------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q   I  +RL  +      +    ++ L   + +    
Sbjct: 403 ---------------YFKLNKEQAEYIATIRLVNINQDWILNKLQNIDELSSNVNKLNTD 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM--VVTVSHLGYV 548
            +S   +  II  +L  VK +   PRRT I+      +     + ED    + ++   Y+
Sbjct: 448 YNSEQTIKEIIISQLEEVKKKFGKPRRTEIIYEDEIADVSHEDLVEDFNPTLVLTEQQYI 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K+  +                 ++D+D +      +    +L F++ G V   KV+ L  
Sbjct: 508 KKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDE 556

Query: 609 GSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             P   G  L N+L   L   E++  I    + + S     V+   ++GNV R  L ++ 
Sbjct: 557 HKPSTYGDFLPNLLGEYLQDNEKVIYISTTKDYKGS-----VIAVFENGNVARIDLQEYK 611

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                       ++   ++S+   T + D+LL ++ G+ +    S +R    RN+ GV G
Sbjct: 612 SKQNRQIPMSAYNTNSNLISIAVITTDVDVLLVSQEGKALIINTSQLRPTKSRNTQGVVG 671

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           + +  + ++VI   I +  D +++      K        I+ + +E  +     +     
Sbjct: 672 MKIDPENNKVIGSIIGVTVDDNFNVETEKGKSKFIMLNDIAPNGKESMTEYLKGNRNTQG 731

Query: 786 SEERCQELKLKEQFILTVSEK 806
           +       K  +   LT  E 
Sbjct: 732 NFIYNTRQKNDKVIKLTQPEN 752



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 18/175 (10%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS----VEG 783
            L   D+++      H   + D+ + +    +   R +    E   S   D       E 
Sbjct: 518 KLKDDDKILQF----HQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEY 573

Query: 784 NISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               E+   +   + +   ++ V E G   R    +++      K  R   +S  N    
Sbjct: 574 LQDNEKVIYISTTKDYKGSVIAVFENGNVARIDLQEYKS-----KQNRQIPMSAYNTNSN 628

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
           L+++  +  +  ++LVS +G  + +  +++R   SR T+GVV      ++ +V+ 
Sbjct: 629 LISIAVITTDVDVLLVSQEGKALIINTSQLRPTKSRNTQGVVGMKIDPENNKVIG 683


>gi|259129711|gb|ACV95365.1| topoisomerase II subunit A [Brucella melitensis]
          Length = 292

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 205/292 (70%), Positives = 246/292 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQ
Sbjct: 181 ELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           VNKA+M+EK+AEL R+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+LNQ
Sbjct: 241 VNKASMIEKMAELARDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQ 292


>gi|253682983|ref|ZP_04863769.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
 gi|253560812|gb|EES90275.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
          Length = 752

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 189/801 (23%), Positives = 342/801 (42%), Gaps = 59/801 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +   +Q+ ++ +A  VI+   +P + DGL PV+R++L+ + +  V  +K Y+K  
Sbjct: 1   MIKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLL 58

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD--PPAAERYTEC 133
           R S   M  Y+  G+  +  A+  MA +  ++   ++ +G+FG         A+ RY EC
Sbjct: 59  RASSMSMV-YYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKGASPRYIEC 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L ++ K+ V  + N+D +  EP+VL +  PNVL+N    IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRG 252
           NL +  D  +  I   DID    ++II+ PD P G  VI  +      Y TG GS  + G
Sbjct: 177 NLIDTCDSIINYIQTKDIDKS--IDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +++         + EIPY+     +  K+ E   +    +I D+ D SDR+G ++ I
Sbjct: 235 KYKMKQCDK-YNIFSIYEIPYETTIEDIENKLREKCDKGFFKEIIDIHDASDRKGIQLDI 293

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVVV 370
            LK+  +    +++L +Y   +S F  N   + L+G  P   +L  I   ++  R   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYIPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
               Y + K  +  + L GL I    LD+ ++IIR S   + A  EL++           
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIK----------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q   I  +RL  +      +    ++ L   + +    
Sbjct: 403 ---------------YFKLNKEQAEYIATIRLVNINQDWILNKLQNIDELSSNVNKLNTD 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM--VVTVSHLGYV 548
            +S   +  II  +L  VK +   PRRT I+      +     + ED    + ++   Y+
Sbjct: 448 YNSEQTIKEIIISQLEEVKKKFGKPRRTEIIYEDEIADVSHEDLVEDFNPTLVLTEQQYI 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K+  +                 ++D+D +      +    +L F++ G V   KV+ L  
Sbjct: 508 KKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDE 556

Query: 609 GSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             P   G  L N+L   L   E++  I    + + S     V+   ++GNV R  L ++ 
Sbjct: 557 HKPSTYGDFLPNLLGEYLQDNEKVIYISTTKDYKGS-----VIAVFENGNVARIDLQEYK 611

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                       ++   ++S+   T + D+LL ++ G+ +    S +R    RN+ GV G
Sbjct: 612 SKQNRQIPMSAYNTDSNLISIAVITTDVDVLLVSQEGKALIVNTSQLRPTKSRNTKGVVG 671

Query: 727 ISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           + +   D +VI   I +  D +++      K        I+ + +E  +     +     
Sbjct: 672 MKIDPEDNKVIGSIIGVTVDHNFNIETEKGKSKFIMLNDIAPNGKESMTEYLKGNRNTQG 731

Query: 786 SEERCQELKLKEQFILTVSEK 806
           +       K  +   LT  E 
Sbjct: 732 NFIYNTRQKNDKVIKLTQPEN 752



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 18/175 (10%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS----VEG 783
            L   D+++      H   + D+ + +    +   R +    E   S   D       E 
Sbjct: 518 KLKDDDKILQF----HQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEY 573

Query: 784 NISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               E+   +   + +   ++ V E G   R    +++      K  R   +S  N    
Sbjct: 574 LQDNEKVIYISTTKDYKGSVIAVFENGNVARIDLQEYKS-----KQNRQIPMSAYNTDSN 628

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
           L+++  +  +  ++LVS +G  + V  +++R   SR TKGVV      +D +V+ 
Sbjct: 629 LISIAVITTDVDVLLVSQEGKALIVNTSQLRPTKSRNTKGVVGMKIDPEDNKVIG 683


>gi|160905674|gb|ABX52395.1| gyrase subunit alpha [Bacillus pumilus]
          Length = 306

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 183/305 (60%), Positives = 241/305 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K + K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE RL K +  +L D+ KDT+D++ 
Sbjct: 61  AMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NP++    
Sbjct: 121 NYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQNPEMTTQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LM+II GPDFPT   I+GR+GI+ AY TGRGSI +R  S IE+TS  +++IV+ EIPYQV
Sbjct: 181 LMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLRAKSDIEETSSGKQRIVINEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+  V+LN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDATVHVLLNHLYKQTTLQT 300

Query: 336 LFSVN 340
            F +N
Sbjct: 301 SFGIN 305


>gi|28916620|gb|AAO59543.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 184/306 (60%), Positives = 244/306 (79%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+G + AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGFRKAYKSGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA  VR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F 
Sbjct: 241 KLIEKIAVSVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|160905612|gb|ABX52364.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 307

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 187/307 (60%), Positives = 246/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 ELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +NM+AL
Sbjct: 301 GINMLAL 307


>gi|327335382|gb|AEA49886.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 304

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 185/304 (60%), Positives = 246/304 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 300

Query: 341 MVAL 344
           ++AL
Sbjct: 301 LLAL 304


>gi|317133928|ref|YP_004089839.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
 gi|315450390|gb|ADU23953.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 729

 Score =  344 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 208/770 (27%), Positives = 360/770 (46%), Gaps = 56/770 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E  +      ++ +  + +++ +  +Y+ YA++VI  RA+P++ DG KP HR++L+ M 
Sbjct: 6   AETAVIDRTGYDEHMRDIVVSEVLTENYMPYAMSVIKSRALPEI-DGFKPAHRKLLYTMY 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD-WSLRLLLIEGQGNFGSV 120
           QM +   K   KCA I G+ M  Y+PHG+++IY+ L R+ +D  SL   LI  +GNFG  
Sbjct: 65  QMKLFDKKT--KCANIVGQTMQ-YNPHGDSSIYETLVRLTEDNESLLTPLISSKGNFGKH 121

Query: 121 DGDPPAAERYTECR--LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
                A   Y        K A  L + + K+ VD   N+D + +EPV+L   +PN+L   
Sbjct: 122 YSRDMAYAAYRYTEAGFTKIAAELFEGINKNAVDMADNFDATKKEPVLLPTSFPNILAMP 181

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMA+NI + NL E+ +  +  I +P      +++I+ GPDF TG  IL  R  +
Sbjct: 182 TLGIAVGMASNIASFNLKELCEATIEYIKDPKT---DILDIMPGPDFSTGGDILFDRDEM 238

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TG+GSIV+R    ++K +    +I + EIPY     A++E +  L + KRI+DI 
Sbjct: 239 DKIYRTGKGSIVVRSKYTVDKKNR---RIEIREIPYSTTTEAIIENVISLCKSKRIMDID 295

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RD++D+ G  + IE KR A  D I+N+LY  T LQ  FS N   L    P    + GI
Sbjct: 296 DIRDDTDKNGLLITIEYKRSADPDEIMNKLYSLTPLQDTFSCNFTMLINNNPVVLGVYGI 355

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++ FR E + R   Y L   R + H++ GL   + N+D+ ++IIR +   +     L
Sbjct: 356 LDEWIKFRTECIKRELTYDLEIFRKKLHLMEGLQKILLNIDKAIKIIRGTKLDKDVIPNL 415

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                             + + Q   I E+RL  +      D   E+
Sbjct: 416 MK--------------------------GFDIDKTQAEYITEIRLRNINEEWILDRTKEI 449

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSV--KDELDTPRRTRIVEG--LLDMEDEDCI 533
             +  +IK+   I+SS   L   I ++L  +  K++   PR+T I     +  +   + +
Sbjct: 450 EKIKEDIKKNETIISSDKALKKQIIKKLKEIANKEDYIKPRKTTINTEVKVEKVTVIEEV 509

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              D+ + +S  GYVK+VP S Y       K  +   ++D+D +  +        VL F+
Sbjct: 510 KNYDVKIIISEHGYVKKVPTSTY-------KEDTEYKLKDDDRILKIIDAQNIGEVLTFT 562

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G VYK K+  + +      G  + +   +   E+   I    +   +     ++   +
Sbjct: 563 DKGVVYKTKISDIEVCKAGEFGTFIRSAAEIPDDEKTVFITATGDFSGN-----MIVVFE 617

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V +  L+ +       K+     +  + ++     ++ +I + +  G+ + F    I
Sbjct: 618 NGKVAKFPLNVYETKQNRKKLINAFYTNVKPVAFYHVLEDVNIKMKSDGGKLLIFNSEMI 677

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +   + + G + + L K  +++   I+   D    + +      S   R
Sbjct: 678 NLKNSKTTQGTQVMKLPKETKILKSRIIEELDKKSSKIVVKSIPASGFSR 727



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 76/243 (31%), Gaps = 21/243 (8%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            D+I+  ++         +  ++  E     +  ++ ++ G   + P S  +        
Sbjct: 484 EDYIKPRKTTINTEVKVEKVTVI--EEVKNYDVKIIISEHGYVKKVPTSTYKEDTE---- 537

Query: 723 GVRGISLAKGD---QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
                 L   D   ++I    +       D+ + Y   +S      +G+         + 
Sbjct: 538 ----YKLKDDDRILKIIDAQNIGEVLTFTDKGVVYKTKISDIEVCKAGEFGTFIRSAAEI 593

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +                 +  V E G   +     +       K I A   +      
Sbjct: 594 PDDEKTVFITATGDFSGNMIV--VFENGKVAKFPLNVYETKQNRKKLINAFYTN-----V 646

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIR 898
             VA + V ++  I + SD G L+      I +  S+ T+G  +    K+ +++    I 
Sbjct: 647 KPVAFYHVLEDVNIKMKSDGGKLLIFNSEMINLKNSKTTQGTQVMKLPKETKILKSRIIE 706

Query: 899 ESE 901
           E +
Sbjct: 707 ELD 709


>gi|28916608|gb|AAO59537.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  344 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 184/306 (60%), Positives = 242/306 (79%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVD D  AA RYTE R+ K A  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDSDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV DNP+I    LME
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSDNPEITNQELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
              GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 YSPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F 
Sbjct: 241 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|163784373|ref|ZP_02179268.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880356|gb|EDP73965.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 633

 Score =  344 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 191/732 (26%), Positives = 329/732 (44%), Gaps = 118/732 (16%)

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGR 234
            NG  GIAVG++T+IP HN  EV +    + + P+  ++ L + I+GPDFPTG +     
Sbjct: 1   CNGATGIAVGLSTSIPPHNFTEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILTTSH 60

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +   Y  GRGSI ++G + IEK +G+R +IV+ EIPYQVNK  ++++IAELVR  +  
Sbjct: 61  KDMVKIYEDGRGSITLKGKARIEKLAGNRHRIVIYEIPYQVNKVELIKRIAELVRTGKEK 120

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+DLRDESDR G R+++ELKR A+ + +L +LY+ T LQ    +N+  L G +P+  +L
Sbjct: 121 GISDLRDESDRDGIRIIVELKREANPEKVLKKLYQRTQLQKSIPINLTVLVGKQPKTLSL 180

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  F+  R EV+ +RT Y L KA  R H++ GL  A+ N D V+ I+R S +   A+
Sbjct: 181 KEVLLEFIKHRIEVITKRTLYELQKAEKRLHIIEGLLKALENADRVIEIVRGSKDSAEAK 240

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L                               LS+ Q +AIL++RL+R T L  + + 
Sbjct: 241 FKLTSE--------------------------FQLSDTQAQAILDMRLSRFTSLESEKLY 274

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           NE + L  +I+   +ILSS    + +   E+  + ++    R+T ++E     ++     
Sbjct: 275 NEADELRKQIERYREILSSEQEKIKVFINEIDELLEKYGDDRKTIVLEK----DEGKLTF 330

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV--------MRDEDFVTDLFIVSTH 586
            E+ ++ V   G  K +   +   + R  K R            +   D++  +  + + 
Sbjct: 331 EENYIIAVLSNG--KIINYKIDNPEDREEKERIFNKVINEITSLILPGDYLVSIQEIKSS 388

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             + F ++ G         LP      +G+     L      +I         +S     
Sbjct: 389 QPIAFITNDGRCIWSLAADLP------KGE---GKLKYIDENKIVG----TAFKSEGEED 435

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   TK+G ++R    D    +++ +  + L   DEI+        + I + T     +
Sbjct: 436 RLFLLTKNGIIKRMTFEDIFYKSQN-QQIIPLQEDDEIVMAFADDHPSYIAIYTAKADLL 494

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            F  + IRV  G  + GV GI L +GD V    +V   +                     
Sbjct: 495 IFERNQIRV-TGAKAKGVEGIDLDEGDYVKGGFLVNSEE--------------------- 532

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                           +ILT+++ G  K  +  +F I  R+ KG
Sbjct: 533 --------------------------------YILTITKNGQCKLVNKEEFPIKKRAQKG 560

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFS 884
           + A  + K +E+    +   VN  D++IL +  G + ++ +++  I +A R   G  + +
Sbjct: 561 LMAVKLQKGDELNICTS---VNIEDEVILSTSGGKVFKMIIDDKRIPVAKRTAMGDKLLN 617

Query: 885 TAKDERVVSVER 896
               E ++ + +
Sbjct: 618 ----EEIIWLAK 625



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 105/298 (35%), Gaps = 29/298 (9%)

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +  +L     +R T ++   E + ++   Y++    +G +   K+ +        +I  K
Sbjct: 305 IDELLEKYGDDRKTIVLEKDEGKLTFEENYIIAVLSNGKIINYKIDNPEDREEKERIFNK 364

Query: 678 L--------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +           D ++S++       I   T  G+C+    + +         G   +  
Sbjct: 365 VINEITSLILPGDYLVSIQEIKSSQPIAFITNDGRCIWSLAADLP-------KGEGKLKY 417

Query: 730 AKGDQVISMAIVLHADADYD---ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
              ++++  A     + D      +   +K M+ +        ++I  L+ D  +    +
Sbjct: 418 IDENKIVGTAFKSEGEEDRLFLLTKNGIIKRMTFEDIFYKSQNQQIIPLQEDDEIVMAFA 477

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           ++          +I   + K           R++    KG+   D+ + +    +   F 
Sbjct: 478 DD-------HPSYIAIYTAKADLLIFERNQIRVTGAKAKGVEGIDLDEGD---YVKGGFL 527

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV-VSVERIRESEIV 903
           VN  + I+ ++  G    V   E  I  RA KG++     K + + +      E E++
Sbjct: 528 VNSEEYILTITKNGQCKLVNKEEFPIKKRAQKGLMAVKLQKGDELNICTSVNIEDEVI 585


>gi|115380010|ref|ZP_01467060.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
 gi|115362989|gb|EAU62174.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  344 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 197/642 (30%), Positives = 315/642 (49%), Gaps = 59/642 (9%)

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP+V+ +R P +L+NG  GIAVGMATNIP H+LGE+ D   A+I+N ++ +  LM+ ++G
Sbjct: 3   EPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELCDALAALIENGNLAVKDLMKFVKG 62

Query: 223 PDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           PDFPTG  IL  +  ++  Y TG+GS+ IRG   +E      +QI++T IPY VNK+ ++
Sbjct: 63  PDFPTGGQILNSKAELREIYETGQGSVRIRGEYALEDVKKGGQQIIITSIPYTVNKSTLV 122

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
            KI +LVRE+++  + D+RDES ++  R+V+E KR AS ++++  LY++T LQ+ F VN+
Sbjct: 123 SKIGDLVRERKLPLLLDVRDESTKE-VRIVLEFKRDASPELVMAYLYKHTPLQTNFGVNL 181

Query: 342 VALNG------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
             L          P+R  L  IL+ F+ FR EVV +R ++ L + + R H+L G      
Sbjct: 182 TCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKVYD 241

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            LDE++RIIR S   + A ++LM R                            L EVQ  
Sbjct: 242 ALDEMIRIIRASEGKQDAAKKLMAR--------------------------FKLDEVQVD 275

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILE++L +L  L    I+ EL    +E+K    IL  + +L G +K EL  +K   +  
Sbjct: 276 AILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKATYNDK 335

Query: 516 RRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           RRTRI       ++  ++  IV ED  V ++  G++KRV         R  K  S   +R
Sbjct: 336 RRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRV---------REVKDPSTTRLR 386

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           + D V  +   S  ++++ FS+ G  Y  +   +P       G  +  +   + GERI  
Sbjct: 387 EGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPAS--TGYGDPVQKLFKFDDGERIVG 444

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCT 691
            +    D        +V  TK G   R  L   +++  RSG+   K    DEI+ V+   
Sbjct: 445 ALSL--DSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVG 502

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY--- 748
           +++ + + T+         + +   AG    GV  I +  GD+V+    V     D    
Sbjct: 503 EKDLLAVLTERTYATVCRAAEVNELAGPG-KGVLVIKVEPGDRVMEFLAVAPGQKDASIT 561

Query: 749 ----DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                 R   +     +     G   E++       V+ +++
Sbjct: 562 FETQKGRKLTLSPAKYEVTGRGGKGHEMSRKDTVKEVQRSVT 603



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/449 (12%), Positives = 135/449 (30%), Gaps = 54/449 (12%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            ++IL+  L     +     ++EL  L   +            L  +I+           
Sbjct: 200 LKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRII--------- 250

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY-----RAQRRGGKGRSG 568
             R +   +           + E  V  +  +   K   L +        Q+R    R  
Sbjct: 251 --RASEGKQDAAKKLMARFKLDEVQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIE 308

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
            +++D          +    +    +                    G A    +  ++  
Sbjct: 309 GILKD----KRKLWGTVKDELAEIKAT----------YNDKRRTRIGGAGSEEVEFSEDA 354

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRN-KLSDFIQINRSGKIAMKLDSRDEILSV 687
            I        DE +      V  T+ G ++R  ++ D             L   D +++V
Sbjct: 355 FIV-------DEDAH-----VVLTRDGWIKRVREVKDPSTTR--------LREGDAVMTV 394

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              + +++++L +  G       + +    G      +      G++++    +      
Sbjct: 395 LAGSLKSNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPR 454

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             + +   K     R  + G  E  T      +  G   E    +   ++  +  ++E+ 
Sbjct: 455 PQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERT 514

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +     + +       GKG+    V   + +   +AV P   +  I   + KG  + +  
Sbjct: 515 YATVCRAAEVNELAGPGKGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSP 574

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVER 896
            +  +  R  KG      ++ + V  V+R
Sbjct: 575 AKYEVTGRGGKGH---EMSRKDTVKEVQR 600


>gi|332148492|dbj|BAK20095.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 301

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 183/301 (60%), Positives = 239/301 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ 
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQR 300

Query: 336 L 336
            
Sbjct: 301 S 301


>gi|284049791|emb|CBJ16554.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 303

 Score =  343 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 182/302 (60%), Positives = 240/302 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME I
Sbjct: 121 EREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGIN 300

Query: 341 MV 342
           ++
Sbjct: 301 LL 302


>gi|327335380|gb|AEA49885.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 303

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 184/303 (60%), Positives = 245/303 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMA
Sbjct: 1   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS 
Sbjct: 61  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I 
Sbjct: 121 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIP 180

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++
Sbjct: 181 GPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLI 240

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N+
Sbjct: 241 EKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL 300

Query: 342 VAL 344
           +AL
Sbjct: 301 LAL 303


>gi|330953528|gb|EGH53788.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 285

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 177/283 (62%), Positives = 220/283 (77%), Gaps = 2/283 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           R  S +E     G R+QIV+TE+PYQ+NKA ++EKIAELV+EK
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK 285


>gi|118474051|ref|YP_884869.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118175338|gb|ABK76234.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
          Length = 713

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 202/775 (26%), Positives = 340/775 (43%), Gaps = 79/775 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT   +   E+    +   S  D   +  LT+A+  +  RAIP   DGLKP  RR+L+ M
Sbjct: 1   MT-ATLDVPEQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAYDGLKPGQRRLLYQM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
               +    K  K +++   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  +
Sbjct: 60  HDSKLLPGNKPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD PAA+RYTE RL      L  +L    V   P +DG + EP VL A++P +L NG  
Sbjct: 119 QGDIPAADRYTEMRLSAPGAALTAELNDHAVPMVPTFDGEWVEPTVLPAQWPVLLCNGAV 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HN  EV+  C A++  P++  D L ++I GPD+ +GA ++G  G++  
Sbjct: 179 GIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLCKLIPGPDWGSGASVVGTAGLREY 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG   +RG   +E      +  ++TE+P  V    + ++I  LV    +  +AD+ 
Sbjct: 239 ITTGRGHFTVRGTISVE-----GKNCIITELPPGVASNTVQDRIRALVESGEMSGVADMS 293

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           D +D R G R+V+  KRG +A+ I +QL   T L+S F+ ++VAL+  + P  +++  ++
Sbjct: 294 DLTDRRNGLRIVVTAKRGHNAEQIRDQLLALTPLESTFAASLVALDENRVPRWWSVRDLI 353

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF+  R+ VV+ R++Y L K   R H++ GL     ++D  V +IR S   + AR+ L 
Sbjct: 354 MAFLQLRDSVVLHRSEYRLEKVTARRHLVAGLMKIHLDIDAAVAVIRGSETVDEARKGLQ 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            +   Q   +L L+L RLT L   +++ E  
Sbjct: 414 ER--------------------------FKIDAEQADYVLSLQLRRLTKLDVIELQAEAE 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RRTRIVEGLLDMEDEDCIVR 535
            L  E  E  D++++      +I +EL+        P   RRT +      +   D    
Sbjct: 448 KLDAEFAELNDLVTNPESRRKVIDKELVETAKLFKGPEYDRRTVLDFDATPVSRGDEDGS 507

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            +  V                 A R   +G       +       + V +   + F +  
Sbjct: 508 RERKVN---------------TAWRLDDRGVFSDSHGELLTSGLGWAVWSDGRIKFTTGN 552

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +K +   +P+         +  ++        + ++P           ++   T+ G
Sbjct: 553 GLPFKIR--DIPVAP------DITGLVR-------SGVLP--------EGYHLALVTRRG 589

Query: 656 NVRRNKLSDFIQ--INRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            + R   +      +  +G   +KL    DE+++    +  N   + +   +  +    A
Sbjct: 590 KILRVDPASVNPQGVAGNGVAGVKLAADGDEVIAALPVSCANGEAILSIAEKSWKVTEVA 649

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                GR   GV      KG+  +  A +        +R    ++ +      SG
Sbjct: 650 DIPVKGRGGAGVAFHPFVKGEDALLAASISKTGYVRGKRAVRPENRAKASIKGSG 704



 Score = 41.1 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 27/192 (14%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT------------EEITSL 775
            L K D +   A     DA++ E    + +  ++R++I  +             +  T L
Sbjct: 433 RLTKLDVIELQAEAEKLDAEFAELNDLVTNPESRRKVIDKELVETAKLFKGPEYDRRTVL 492

Query: 776 KNDSSVEGNISEERCQELKLKEQF-------------ILTVSEKGFGKRTSSYDFRISNR 822
             D++      E+  +E K+   +              L  S  G+   +       +  
Sbjct: 493 DFDATPVSRGDEDGSRERKVNTAWRLDDRGVFSDSHGELLTSGLGWAVWSDGRIKFTTG- 551

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +G   +  D+    +I  LV    + +   + LV+ +G ++RV    +     A  GV  
Sbjct: 552 NGLPFKIRDIPVAPDITGLVRSGVLPEGYHLALVTRRGKILRVDPASVNPQGVAGNGVAG 611

Query: 883 FST-AKDERVVS 893
               A  + V++
Sbjct: 612 VKLAADGDEVIA 623



 Score = 38.0 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 5/133 (3%)

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
            +  R+       +     D  V  +I+      +  +   +  V+ +G   R       
Sbjct: 541 WSDGRIKFTTGNGLPFKIRDIPVAPDITGLVRSGVLPEGYHLALVTRRGKILRVDPASVN 600

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRA 876
               +G G+    ++   +   ++A  PV+  + + I+ +++K   +   V +I +  R 
Sbjct: 601 PQGVAGNGVAGVKLAADGD--EVIAALPVSCANGEAILSIAEKSWKV-TEVADIPVKGRG 657

Query: 877 TKGVVIFSTAKDE 889
             GV      K E
Sbjct: 658 GAGVAFHPFVKGE 670


>gi|120406840|ref|YP_956669.1| DNA gyrase/topoisomerase IV subunit A [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959658|gb|ABM16663.1| DNA topoisomerase IV subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 714

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 201/755 (26%), Positives = 325/755 (43%), Gaps = 78/755 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT   +   E+    +   S  D      LT+A+  +  RAIP   DGLKP  RR+L+ M
Sbjct: 1   MT-ATLDVPEQNPDLVLDQSADDYWNQYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
               +    K  K ++I   V G  HPHG A++Y A A MA ++  R+ +I+GQG F  +
Sbjct: 60  HDSKLLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAAEFQ-RVKVIDGQGAFPRI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD PAA+RYTE RL      L  +L    V   P +DG + EP  L AR+P +L NG  
Sbjct: 119 QGDIPAADRYTEMRLSAPGAALTAELDNHAVPMVPTFDGEWTEPTWLPARWPVLLCNGAV 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G TG++  
Sbjct: 179 GIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREY 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG   +RG   +     D +  +VTE+P  V    + ++I  LV    +  +AD+ 
Sbjct: 239 ITTGRGQFTVRGTVSV-----DGKNCIVTELPPGVASNTVQDRIRALVESGELSGVADMS 293

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           D +D R G R+V+  KRG SA+ I  QL   T L+S F+ ++VAL+  + P  +++  ++
Sbjct: 294 DLTDRRNGLRIVVTAKRGHSAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELI 353

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF+  R+ VVVRR++Y L K   R H++ GL     ++D  V +IR S   + AR+ L 
Sbjct: 354 SAFLHLRDSVVVRRSEYRLEKVTARRHLVAGLMTIHLDIDAAVAVIRGSETVDEARQGLQ 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            +   Q   +L L+L RLT L   +++ E  
Sbjct: 414 ER--------------------------FGIDAEQADYVLALQLRRLTKLDVIELQAEAE 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RRTRI--------------- 520
            L  E  E  +++++      +I +EL+        P   RRT +               
Sbjct: 448 KLDAEFAELTELVANPDARRKVIDEELVETAKLFKGPEFDRRTVLDFDATPVSAGADEDG 507

Query: 521 -----VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                V     ++D          +  S LG+       V      G   +   +    D
Sbjct: 508 PRERKVNAAWRLDDRGVFSDSHGDLLTSGLGWAVWTDGRVKFTTGNGLPFKIRDIPVAPD 567

Query: 576 FVTDL---FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
               L    +   H  +   +  G + +     +        G A + + + +  + +  
Sbjct: 568 ITGLLCSGVLAPGH-HLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKLAAGDPEDAVIA 626

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA---MKLDSRDEILSVET 689
            +P      S  N   + +    + +  +++D     R G        +   D +L+   
Sbjct: 627 ALPV-----SCANGEALLSISEKSWKVTEVADIPVKGRGGAGVGFHPFVKGEDAVLAATI 681

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                     T   +  +   +  R  A     GV
Sbjct: 682 S--------ATGYVRGKKAVRADNRAKASIKGSGV 708



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 3/144 (2%)

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
               R+       +     D  V  +I+   C  +      +  V+ +G   R       
Sbjct: 542 WTDGRVKFTTGNGLPFKIRDIPVAPDITGLLCSGVLAPGHHLALVTRRGKILRIDPAAVN 601

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRA 876
               +G G+    ++  +   A++A  PV+  + + ++ +S+K   +   V +I +  R 
Sbjct: 602 PQGAAGNGVAGVKLAAGDPEDAVIAALPVSCANGEALLSISEKSWKV-TEVADIPVKGRG 660

Query: 877 TKGVVIFSTAKDERVVSVERIRES 900
             GV      K E  V    I  +
Sbjct: 661 GAGVGFHPFVKGEDAVLAATISAT 684


>gi|330466713|ref|YP_004404456.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
 gi|328809684|gb|AEB43856.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
          Length = 1256

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 206/712 (28%), Positives = 313/712 (43%), Gaps = 53/712 (7%)

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             TE R+ + A  L+ +LG++TVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 563  NTEARMSREAMLLVGELGEETVDVEPNYDGSLTQPTVLPAAFPNLLVNGTSGIAVGMATN 622

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            +  HNLGEVV     +I +P+  LD LME + GPD PTG ++LG   ++ AY TGRG + 
Sbjct: 623  MIPHNLGEVVSAARWLIRHPNATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVR 682

Query: 250  IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKI-AELVREKRIVDIADLRDESDRQ 306
            +RG   I    G   R+ I V E+PY V    ++  I  E+ + KR+  IAD++D +DR+
Sbjct: 683  MRGKVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAITNEVTKTKRLTGIADVKDLTDRE 742

Query: 307  G-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F+A R
Sbjct: 743  NGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVFLAHR 802

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             EVV RR+ Y   K ++R H++ GL IA+ ++D+VV++IR S + + A+  LMQ+     
Sbjct: 803  YEVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVKLIRASEDAQAAKDGLMQK----- 857

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   LSE+Q   IL+  L RLT   R ++  E   L  EI 
Sbjct: 858  ---------------------FKLSEIQASYILDTPLRRLTKYDRLELEAEQEKLRAEIA 896

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDM 538
            E   IL   + L  ++  EL +V  +   PRRT +V+G L                 +  
Sbjct: 897  ELSTILDDENVLKKLVSDELAAVVKQFAAPRRTTLVDGDLKEVLAASAPAGPLEVADDPC 956

Query: 539  VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
             V +S  G V R             +GR        D V  +   +    VL  +S G  
Sbjct: 957  QVILSATGLVARTAAES----EEAAEGRRRHGRVKHDAVRAVVHSTARGRVLLVTSAGRA 1012

Query: 599  YKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +K  V  LP+   QA       G +   ++ L  GE +  + P     ++  +  +   T
Sbjct: 1013 FKVDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLGP--TAEGSPGLALGT 1070

Query: 653  KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
            + G V+         +       + L   DE++           +   T     +RFP  
Sbjct: 1071 RQGVVKVCAPDW--PVRSDEFEVIGLRDGDEVVGATWLTDGAESLAFLTSAASLLRFPAG 1128

Query: 712  AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +R    +   G+ G++L  G QV+    V   D  + E +      +  +         
Sbjct: 1129 TVRPQGLKGG-GMAGVALPDGAQVVYFGAVRTDDPQHGEPMVVTSTGATVKVTPFAAYPA 1187

Query: 772  ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                      +  +  E    +       +  +  G      + D R     
Sbjct: 1188 KGRATGGVRAQRFLKGETDVVVAWIGPRPVGSTANGEPVELPTADPRRDGSG 1239



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/124 (53%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK 
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYAMYESGFRPDRAHVKS 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPHG+ AIYDA+ RMAQD+SL + LI+G GNFGS D D PAA RY    
Sbjct: 80  ARVVGDVMGRYHPHGDTAIYDAMVRMAQDFSLNVPLIDGHGNFGSPD-DGPAAARYCVTG 138

Query: 135 LQKA 138
             + 
Sbjct: 139 DTRI 142



 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 85/271 (31%), Gaps = 28/271 (10%)

Query: 644  NNLYVVFATKHGNVRRNKLSDFIQ---INRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
            ++   V  +  G V R             R G++       D + +V   T    +LL T
Sbjct: 953  DDPCQVILSATGLVARTAAESEEAAEGRRRHGRVK-----HDAVRAVVHSTARGRVLLVT 1007

Query: 701  KLGQCVRFPISAIRVFAGRNSV-----GVRG---ISLAKGDQVISMAIVLHADADYDERI 752
              G+  +  +  + V   +        G+     + L  G+ V+ +A +           
Sbjct: 1008 SAGRAFKVDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLGPTAEGSPGLA 1067

Query: 753  CYMKHMS----AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
               +       A    +  D  E+  L++   V G         L    + +  ++    
Sbjct: 1068 LGTRQGVVKVCAPDWPVRSDEFEVIGLRDGDEVVG------ATWLTDGAESLAFLTSAAS 1121

Query: 809  GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKG-TLIRVP 866
              R  +   R     G G+    +    ++    AV   +    + ++V+  G T+   P
Sbjct: 1122 LLRFPAGTVRPQGLKGGGMAGVALPDGAQVVYFGAVRTDDPQHGEPMVVTSTGATVKVTP 1181

Query: 867  VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                    RAT GV      K E  V V  I
Sbjct: 1182 FAAYPAKGRATGGVRAQRFLKGETDVVVAWI 1212


>gi|146217173|gb|ABQ10651.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 183/308 (59%), Positives = 245/308 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+
Sbjct: 1   VRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           + R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EP
Sbjct: 61  NYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           VV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPD
Sbjct: 121 VVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKI
Sbjct: 181 FPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKI 240

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           A+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL
Sbjct: 241 ADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLAL 300

Query: 345 NGYKPERF 352
              +P+  
Sbjct: 301 VDGQPKVL 308


>gi|28916590|gb|AAO59528.1| gyrase A [Bacillus subtilis]
          Length = 310

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 181/310 (58%), Positives = 244/310 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+P++RDGLKP HRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPEVRDGLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE  + K +  +L D+ KDT+D++
Sbjct: 61  DSMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             YDGS +EPVV+ +R+PN+L NG  GIA GMA NIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DXYDGSEREPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQ 300

Query: 335 SLFSVNMVAL 344
           + F +N++AL
Sbjct: 301 TSFGINLLAL 310


>gi|153824230|ref|ZP_01976897.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|126518247|gb|EAZ75472.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 411

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 141/440 (32%), Positives = 221/440 (50%), Gaps = 82/440 (18%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+S
Sbjct: 1   IAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLS 60

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 61  HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 120

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L 
Sbjct: 121 YQLPLASRTARGKPIVNLLPLEENERITAILPVTE---FSEDKFIFMATGDGTVKKTSLD 177

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF------- 716
            F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S            
Sbjct: 178 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 237

Query: 717 -----------------AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                             GR + GVRG+ LA GDQV+S+                     
Sbjct: 238 VLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLI-------------------- 277

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                            +   E  +LTV+E G+GKRTS  ++  
Sbjct: 278 ---------------------------------VPKTEGDVLTVTENGYGKRTSLSEYPT 304

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+G
Sbjct: 305 KGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQG 362

Query: 880 VVIFSTAKDERVVSVERIRE 899
           V +  T++ E VV ++RI E
Sbjct: 363 VTLIRTSEGESVVGLQRIDE 382



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 34/275 (12%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        +  +   +  G VK+  L  +   R    G   + +RDED +  + 
Sbjct: 145 ERITAILPVTEFSEDKFIFMATGDGTVKKTSLDQFANVR--ANGLIALNLRDEDSLIGVD 202

Query: 582 IVSTHTSVLFFSSLGFVYKEK-------VWRLPIGSPQARGKALINI------------- 621
           I    + ++ FS  G V + K       V           G+  I               
Sbjct: 203 ITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGV 262

Query: 622 --LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMK 677
             + L  G+++ +++  P+ E       V+  T++G  +R  LS++    R   G +++K
Sbjct: 263 RGMKLADGDQVVSLI-VPKTEGD-----VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIK 316

Query: 678 LDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           +      ++      + ++ ++ T  G  VR  ++ +     RN+ GV  I  ++G+ V+
Sbjct: 317 VSERNGSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVG-RNTQGVTLIRTSEGESVV 375

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +  +   +             +        D E+
Sbjct: 376 GLQRIDEIEESELPEGEEALVENDAPVAQDDDGEQ 410


>gi|28916610|gb|AAO59538.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  341 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 182/308 (59%), Positives = 244/308 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+ RA+P++RD LKP HRRIL+ M  +G+  +K Y K ARI GEV+G YHPHG++A+YD+
Sbjct: 1   IVSRALPEVRDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD++ R +L++G GNFGSVDGD  AA RYTE  + K +  +L D+ KDT+D++ N
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EPVV+ +R+PN+LVNG  GIAVGMA NIP H LGE++DG +AV +NPDI +  L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMAPNIPPHQLGEIIDGVLAVSENPDITIPEL 180

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVN
Sbjct: 181 MEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ 
Sbjct: 241 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 300

Query: 337 FSVNMVAL 344
           F +N++AL
Sbjct: 301 FGINLLAL 308


>gi|28916598|gb|AAO59532.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 305

 Score =  341 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 183/305 (60%), Positives = 242/305 (79%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
             QD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 61  RGQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           + +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME 
Sbjct: 121 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|28916596|gb|AAO59531.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 182/308 (59%), Positives = 244/308 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+ RA+PD+ D LKP HRRIL+ M  +G+  +K Y K ARI GEV+G YHPHG++A+YD+
Sbjct: 1   IVSRALPDVPDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD++ R +L++G GNFGSVDGD   A RYTE R+ K +  +L D+ KDT+D++ N
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAVAMRYTEARMSKISMEILRDITKDTIDYQDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H +GE++DG +AV +NPDI +  L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQVGEIIDGVLAVSENPDIPIPEL 180

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVN
Sbjct: 181 MEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ 
Sbjct: 241 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 300

Query: 337 FSVNMVAL 344
           F +N++AL
Sbjct: 301 FGINLLAL 308


>gi|28916616|gb|AAO59541.1| gyrase A [Bacillus subtilis]
          Length = 306

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 179/306 (58%), Positives = 242/306 (79%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+P++RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPEVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++  YD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDTYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS ++PVV+ +R+PN+L NG  GIA GMA NIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSERDPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+ F 
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|145308239|gb|ABP57383.1| gyrase A [Brucella abortus]
          Length = 284

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 199/283 (70%), Positives = 239/283 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQ
Sbjct: 181 ELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           VNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR 
Sbjct: 241 VNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRD 283


>gi|46019128|emb|CAE52028.1| gyrase subunit A [Bacillus subtilis]
 gi|46019130|emb|CAE52029.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 179/293 (61%), Positives = 236/293 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ 
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 293


>gi|75761793|ref|ZP_00741728.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490726|gb|EAO54007.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 362

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 135/431 (31%), Positives = 219/431 (50%), Gaps = 71/431 (16%)

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMV 539
              I E   IL+   ++L II++EL  VK+  +  RRT I  G ++ +EDED I  +++ 
Sbjct: 1   MNLIAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIA 60

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++H GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY
Sbjct: 61  ITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVY 120

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R
Sbjct: 121 RTKGYEIPEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKR 177

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R    R
Sbjct: 178 TPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG-R 236

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV+ I+L + DQV+ M IV                                      
Sbjct: 237 NAAGVKAITLGEEDQVVGMEIVEE------------------------------------ 260

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +L V++ G+GKRT   ++R+ +R GKG++  +++  ++ G
Sbjct: 261 -----------------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNIT--DKNG 301

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVAV  V   + I+L++  G +IR+PV++I    R T+GV +                E
Sbjct: 302 KLVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLED-----------E 350

Query: 900 SEIVDEAESTE 910
            +  D ++STE
Sbjct: 351 QDGSDSSKSTE 361


>gi|46019112|emb|CAE52020.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 180/293 (61%), Positives = 236/293 (80%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 293


>gi|28916622|gb|AAO59544.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  338 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 182/306 (59%), Positives = 241/306 (78%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G+ +EPVV+ +R+PN+LVNG  GIAVGMATNI  H LGEV++G +A  +NP+I    LME
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNILPHQLGEVIEGVLAESENPEITNQELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
            I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 YIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F 
Sbjct: 241 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|126438285|ref|YP_001073976.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
 gi|126238085|gb|ABO01486.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
          Length = 711

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 210/774 (27%), Positives = 342/774 (44%), Gaps = 87/774 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +   S  D   +  LT+A+  +  RAIP   DGLKP  RR+L+ M    +    
Sbjct: 6   EQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGN 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  K +++   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+R
Sbjct: 66  KPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADR 124

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      L  +L    V     +DG + EP VL A++P +L NG  GIA G AT 
Sbjct: 125 YTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATK 184

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G TG++    TGRG   
Sbjct: 185 VPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFT 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +RG   +     D +  V+TE+P  V    + E+I  LV    +  +AD+ D +D R G 
Sbjct: 245 VRGTVTV-----DGKNCVITELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGL 299

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREE 367
           R+V+  KRG +A+ I  QL   T L+S F+ ++VAL+  + P  +++  ++ AF++ R++
Sbjct: 300 RIVVTAKRGHNAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDK 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV+ R++Y L K   R H++ GL +   ++D  V +IR S   + AR+ L  R       
Sbjct: 360 VVLHRSEYRLEKVTARRHLVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDR------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +  VQ   +L L+L RLT L   +++ E   L  E  E 
Sbjct: 413 -------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAEL 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP---RRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +++S+      +I +EL+        P   RRT +      +                 
Sbjct: 454 TELVSNPDARRVVIDKELVETAKLFKGPEFDRRTVLDFEATPITTGAAD----------- 502

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF--IVSTHTSVLFFSSLGFVYKEK 602
            G  +R   + +R   RG            D +T      V T   V F +  G  YK +
Sbjct: 503 DGPRERKVNASWRLDDRG-----VFSDSHGDLLTSGLGWAVWTDGRVKFTTGAGLPYKIR 557

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P+         +  +L        + ++P        +  ++   T+ G + R   
Sbjct: 558 --DIPVAP------DITGLLR-------SGVLP--------DGAHLALVTRRGKILRIDP 594

Query: 663 SDFIQINR--SGKIAMKLDSRDE---ILSVET--CTQENDILLTTKLGQCVRFPISAIRV 715
           +         +G   +KL + D    +++     C  +  IL  ++ G   +        
Sbjct: 595 AAVNPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGW--KVTEVPDIP 652

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             GR   GV       G+  +  A V        ++    ++ +      SGD 
Sbjct: 653 VKGRGGAGVGFHPFVGGEDALLSASVSPTGFMRGKKKVRAENRAKASVKGSGDG 706



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
               R+       +     D  V  +I+      +      +  V+ +G   R       
Sbjct: 539 WTDGRVKFTTGAGLPYKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVN 598

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
               +G G+    ++  + +  ++A  P    +++ I+ +S+KG  +   V +I +  R 
Sbjct: 599 PQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKV-TEVPDIPVKGRG 657

Query: 877 TKGV 880
             GV
Sbjct: 658 GAGV 661


>gi|145221100|ref|YP_001131778.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
 gi|145213586|gb|ABP42990.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
          Length = 716

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 201/753 (26%), Positives = 329/753 (43%), Gaps = 79/753 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  I    E+  + +   S  +   +  LT+A+  +  RAIP   DGLKP  RR+L+ M
Sbjct: 1   MTATI----EQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +    K  K ++I   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  +
Sbjct: 57  HESRLLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRI 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD PAA+RYTE RL      L  +L    V     +DG + EP VL A++P +L NG  
Sbjct: 116 QGDIPAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAV 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G  G++  
Sbjct: 176 GIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREY 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG   +RG   +     D +  ++TE+P  V    + ++I  LV    +  +AD+ 
Sbjct: 236 ITTGRGLFTVRGTVSV-----DGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMS 290

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           D +D R G R+V+  KRG SA+ I +QL   T L+S F+ ++VAL+  + P  +++  ++
Sbjct: 291 DLTDRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELI 350

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF++ R+ VV+ R++Y L K   R H++ GL     ++D  V IIR S   + AR  L 
Sbjct: 351 AAFLSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQ 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            +  VQ   +L L+L RLT L   +++ E  
Sbjct: 411 ER--------------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEAE 444

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RRTRI--------------- 520
            L  E     +++S+      +I QEL+        P   RRT +               
Sbjct: 445 KLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDYDATPVAANNSEDG 504

Query: 521 -----VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                V     ++D          +  S LG+       +      G   +   +    D
Sbjct: 505 PRERKVNAAWRLDDRGVFSDSHGTLLSSGLGWAVWTDGRIKFTTGGGLPFKIRDIPVSPD 564

Query: 576 FVTDLF--IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
               L   +++  + +   +  G V +     +        G A + +++ +  +R+   
Sbjct: 565 ITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAA 624

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA---MKLDSRDEILSVETC 690
           +P      S  N   + +    + +  +++D     R G            D +LS    
Sbjct: 625 LPV-----SCANGEAILSISEKSWKVTEVADIPVKGRGGAGVGFHPFGKGEDALLSAAIS 679

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                    T   +  R   +  R  A     G
Sbjct: 680 --------ATGYVRGTRTVRAEKRAKASIKGSG 704



 Score = 45.7 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 11/199 (5%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAI------VLHADADYDERI 752
           +  +  + P    R     ++  V   +   G  ++ ++ A       V           
Sbjct: 473 ETAKLFKGPEYDRRTVLDYDATPVAANNSEDGPRERKVNAAWRLDDRGVFSDSHGTLLSS 532

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +    R+       +     D  V  +I+      +      +  ++ +G   R 
Sbjct: 533 GLGWAVWTDGRIKFTTGGGLPFKIRDIPVSPDITGLLQSGVLAPGSHLALITRRGRVLRI 592

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEI 870
                     +G G+    +   +    ++A  PV+  + + I+ +S+K   +   V +I
Sbjct: 593 DPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKV-TEVADI 651

Query: 871 RIASRATKGVVIFSTAKDE 889
            +  R   GV      K E
Sbjct: 652 PVKGRGGAGVGFHPFGKGE 670



 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 58/159 (36%), Gaps = 13/159 (8%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D +  E     K     RR +     + T +  ++S +G    +     +L ++ + + S
Sbjct: 468 DQELVETAKLFKGPEYDRRTVL--DYDATPVAANNSEDGPRERKVNAAWRLDDRGVFSDS 525

Query: 805 EK-------GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                    G+   T       +   G   +  D+    +I  L+    +     + L++
Sbjct: 526 HGTLLSSGLGWAVWTDGRIKFTTG-GGLPFKIRDIPVSPDITGLLQSGVLAPGSHLALIT 584

Query: 858 DKGTLIRVPVNEIRIASRATK---GVVIFSTAKDERVVS 893
            +G ++R+    +     A     GV + +   ++RV++
Sbjct: 585 RRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIA 623


>gi|108802303|ref|YP_642500.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119871456|ref|YP_941408.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
 gi|108772722|gb|ABG11444.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119697545|gb|ABL94618.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
          Length = 711

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 212/774 (27%), Positives = 343/774 (44%), Gaps = 87/774 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +   S  D   +  LT+A+  +  RAIP   DGLKP  RR+L+ M    +    
Sbjct: 6   EQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGN 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  K +++   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  + GD PAA+R
Sbjct: 66  KPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIPAADR 124

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      L  +L    V     +DG + EP VL A++P +L NG  GIA G AT 
Sbjct: 125 YTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATK 184

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G TG++    TGRG   
Sbjct: 185 VPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFT 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +RG   +     D +  VVTE+P  V    + E+I  LV    +  +AD+ D +D R G 
Sbjct: 245 VRGTVTV-----DGKNCVVTELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGL 299

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREE 367
           R+V+  KRG SA+ I  QL   T L+S F+ ++VAL+  + P  +++  ++ AF++ R++
Sbjct: 300 RIVVTAKRGHSAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDK 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV+ R++Y L K   R H++ GL +   ++D  V +IR S   + AR+ L  R       
Sbjct: 360 VVLHRSEYRLEKVTARRHLVAGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDR------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +  VQ   +L L+L RLT L   +++ E   L  E  E 
Sbjct: 413 -------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAEL 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP---RRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +++S+      +I +EL+        P   RRT +    + +                 
Sbjct: 454 TELVSNPDARRVVIDKELVETAKLFKGPEFDRRTVLDFEAIPITTGAAD----------- 502

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF--IVSTHTSVLFFSSLGFVYKEK 602
            G  +R   + +R   RG            D +T      V T   V F +  G  YK +
Sbjct: 503 DGPRERKVNASWRLDDRG-----VFSDSHGDLLTSGLGWAVWTDGRVKFTTGAGLPYKIR 557

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P+         +  +L        + ++P        +  ++   T+ G + R   
Sbjct: 558 --DIPVAP------DITGLLR-------SGVLP--------DGAHLALVTRRGKILRIDP 594

Query: 663 SDFIQINR--SGKIAMKLDSRDE---ILSVET--CTQENDILLTTKLGQCVRFPISAIRV 715
           +         +G   +KL + D    +++     C  +  IL  ++ G   +        
Sbjct: 595 AAVNPQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGW--KVTEVPDIP 652

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             GR   GV       G+  +  A V        ++    ++ +      SGD 
Sbjct: 653 VKGRGGAGVGFHPFVGGEDALLSASVSPTGFMRGKKKVRAENRAKASVKGSGDG 706



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
               R+       +     D  V  +I+      +      +  V+ +G   R       
Sbjct: 539 WTDGRVKFTTGAGLPYKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVN 598

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
               +G G+    ++  + +  ++A  P    +++ I+ +S+KG  +   V +I +  R 
Sbjct: 599 PQGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKV-TEVPDIPVKGRG 657

Query: 877 TKGV 880
             GV
Sbjct: 658 GAGV 661


>gi|330864104|emb|CBX74176.1| hypothetical protein YEW_JA39640 [Yersinia enterocolitica W22703]
          Length = 387

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 217/407 (53%), Gaps = 59/407 (14%)

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y 
Sbjct: 1   MEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 60

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ 
Sbjct: 61  AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRP 120

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F +   +G IA+ 
Sbjct: 121 IVNLLPLEPNERITAILPVREYEE---GRHIFMATASGTVKKTALTEFSRPRSAGIIAVN 177

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  DE++ V+     N+++L + LG+ VRFP S +R    R + GVRGI+L   D+VIS
Sbjct: 178 LNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSMG-RTATGVRGINLNGDDRVIS 236

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + I                          GD E +T  +N       +            
Sbjct: 237 LIIPR------------------------GDGEILTVTENGYGKRTAV------------ 260

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
                             ++   +R+ +G+ +  VS+ N  G +V    V   DQI++++
Sbjct: 261 -----------------EEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMIT 301

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E  D
Sbjct: 302 DAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDD 348


>gi|315441935|ref|YP_004074814.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
           subunit alpha [Mycobacterium sp. Spyr1]
 gi|315260238|gb|ADT96979.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Mycobacterium sp. Spyr1]
          Length = 711

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 192/699 (27%), Positives = 317/699 (45%), Gaps = 68/699 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  I    E+  + +   S  +   +  LT+A+  +  RAIP   DGLKP  RR+L+ M
Sbjct: 1   MTATI----EQNPELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +    K  K ++I   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  +
Sbjct: 57  HESRLLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRI 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD PAA+RYTE RL      L  +L    V     +DG + EP VL A++P +L NG  
Sbjct: 116 QGDIPAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAV 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G  G++  
Sbjct: 176 GIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLREY 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG   +RG   +     D +  ++TE+P  V    + ++I  LV    +  +AD+ 
Sbjct: 236 ITTGRGLFTVRGTVSV-----DGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMS 290

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           D +D R G R+V+  KRG SA+ I +QL   T L+S F+ ++VAL+  + P  +++  ++
Sbjct: 291 DLTDRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELI 350

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF++ R+ VV+ R++Y L K   R H++ GL     ++D  V IIR S   + AR  L 
Sbjct: 351 AAFLSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQ 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            +  VQ   +L L+L RLT L   +++ E  
Sbjct: 411 ER--------------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEAE 444

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RRTRI--------------- 520
            L  E     +++S+      +I QEL+        P   RRT +               
Sbjct: 445 KLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDYDATPVAANNSEDG 504

Query: 521 -----VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                V     ++D          +  S LG+       +      G   +   +    D
Sbjct: 505 PRERKVNAAWRLDDRGVFSDSHGTLLSSGLGWAVWTDGRIKFTTGGGLPFKIRDIPVSPD 564

Query: 576 FVTDLF--IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
               L   +++  + +   +  G V +     +        G A + + + +  + +   
Sbjct: 565 ITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLAAGHPEDSVIAA 624

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +P     +  N   ++  ++ G  +   ++D     R G
Sbjct: 625 LPL----TCGNGEAILSVSEKGW-KVTDVADIPVKGRGG 658



 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 64/200 (32%), Gaps = 11/200 (5%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAI------VLHADADYDERI 752
           +  +  + P    R     ++  V   +   G  ++ ++ A       V           
Sbjct: 473 ETAKLFKGPEYDRRTVLDYDATPVAANNSEDGPRERKVNAAWRLDDRGVFSDSHGTLLSS 532

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +    R+       +     D  V  +I+      +      +  ++ +G   R 
Sbjct: 533 GLGWAVWTDGRIKFTTGGGLPFKIRDIPVSPDITGLLQSGVLAPGSHLALITRRGRVLRI 592

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFP--VNDNDQIILVSDKGTLIRVPVNEI 870
                     +G G+    ++  +   +++A  P    + + I+ VS+KG  +   V +I
Sbjct: 593 DPAAVNPQGAAGNGVAGVKLAAGHPEDSVIAALPLTCGNGEAILSVSEKGWKV-TDVADI 651

Query: 871 RIASRATKGVVIFSTAKDER 890
            +  R   GV     AK E 
Sbjct: 652 PVKGRGGAGVGFHPFAKGET 671


>gi|167957029|ref|ZP_02544103.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 417

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 229/473 (48%), Gaps = 60/473 (12%)

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL ++L RLTGL R+ I NEL  L   I++   IL+   
Sbjct: 3   QEEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQ 62

Query: 496 RLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +L IIK EL+ +K++    RR++ I   L    DE+ I  ED VV ++   Y+KR   S
Sbjct: 63  EILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTLAS 122

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKG+ G+  ++ D +  +    TH  +LFF++ G V++ K + +P  S QA+
Sbjct: 123 DYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAK 182

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A +N+L L   E+IT I+ F +D  + ++ Y+  AT  G +++  + D+  I  +G I
Sbjct: 183 GVAAVNLLQLQPEEKITAIIKFEKD--AKDDGYLFMATVKGTIKKTPVKDYANIRTNGLI 240

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KLD  DE+  ++  +  +DIL++T  GQ +RF     R    R + GVRG+ L   D 
Sbjct: 241 AIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSMG-RAARGVRGVRLRPNDS 299

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M I                                    ND      ISE       
Sbjct: 300 VVGMDIA-----------------------------------NDDRTLLVISENGY---- 320

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QI 853
                         GK T   +F    R G GI+A  V+   + G +++V  +  +D + 
Sbjct: 321 --------------GKATKISNFPSHKRGGVGIKAAVVTA--KTGPIISVKTIQQDDIEA 364

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +LVS +G  IRV + +I +  R T+GV I  T+ D+ V SV  + E    +E+
Sbjct: 365 LLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSERSSNEES 417


>gi|332141550|ref|YP_004427288.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551572|gb|AEA98290.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 277

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 164/273 (60%), Positives = 207/273 (75%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK 
Sbjct: 3   DNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GCVA+I +P I +D LM  I GPDFPT A+I GR GI++AY TGRG I +
Sbjct: 183 PPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           R  + IE  +  +E IVV EIPYQVNKA    K
Sbjct: 243 RAKAEIETDANGKETIVVNEIPYQVNKAPSYRK 275


>gi|312600999|gb|ADQ90254.1| Topoisomerase IV subunit A [Mycoplasma hyopneumoniae 168]
          Length = 749

 Score =  331 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 182/717 (25%), Positives = 335/717 (46%), Gaps = 44/717 (6%)

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +   L+E  GN GS+D DPPAA RYTE RL + +  LL+ + K+ V F PN+D S +EP 
Sbjct: 1   MNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISKNVVSFYPNFDDSEKEPT 60

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           +L A +PN+L+NG  GIA G AT IP HNLGEV+D  + +I NP I ++ +  II GPDF
Sbjct: 61  ILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDF 120

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PTG ++ G++GI +A+ TG+G I I     I      +  I +T IP+ ++K++++E+I 
Sbjct: 121 PTGGIVYGKSGIFDAFKTGKGKIKISSDYKI-FEKNGQNVIEITSIPFGISKSSLIEEID 179

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           ++  + +I  I ++ D+SD+ G  ++IEL++  + D+I+N L + T LQ  +S N VA+ 
Sbjct: 180 DIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAIC 239

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P+  ++  ++  ++    ++ +    + L K + R  ++ G        DEV+++IR
Sbjct: 240 DNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIR 299

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S N +               + DLI                  S+ Q  AI  +RL RL
Sbjct: 300 ASDNSK------------VGVVSDLIKF-------------FNFSQTQAEAIASMRLYRL 334

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
           + + +     E  +L   I     ++ ++      +   L   K     PR+T+I++  +
Sbjct: 335 SKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDI 394

Query: 526 DMEDEDCI--VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
            ++         E     ++  G  K++ +                 + + DF     I+
Sbjct: 395 KIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLP-----DEIEKTQLPNGDFFIFQGII 449

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +     +F ++ G +    V ++P  + +     L   L +   ++I ++      ESS 
Sbjct: 450 NQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQ 509

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSVETCTQENDILLTTKL 702
              +++F +K    +R  L   ++I +     + +    DE++SV    +  +I+L T  
Sbjct: 510 ---FLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQ 566

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            + ++  IS I ++  RNS G++     K + + +   +  +++                
Sbjct: 567 NRALKMSISEIPIYT-RNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEKINTE 625

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG-KRTSSYDFR 818
            L  G+ + +T     + ++ ++S +            L + E G G K  S  DFR
Sbjct: 626 NLFFGN-KILTPKNFKTKLDFSLSPKSIIIYNEN----LQIFEFGEGLKIFSLNDFR 677



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 107/336 (31%), Gaps = 28/336 (8%)

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVY--KEKVWRLPIGSPQARGKALINILSLNQ----GE 628
           D V  +   S ++ V   S L   +   +            R   +   + L +     +
Sbjct: 292 DEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEK 351

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            I       E++  ++   +   T      +       +            ++DE++   
Sbjct: 352 NIARFKKLIENKDEFDKNLINMLTD----FKKHHGKPRKTKIIDSDIKIKINKDELV--- 404

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD- 747
               E      TK G   +  I          +       L  GD  I   I+       
Sbjct: 405 --KDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ------LPNGDFFIFQGIINQKQKAV 456

Query: 748 --YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              ++    +  +     L   ++     +         I      +     QF++ +S+
Sbjct: 457 FLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISK 516

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
             F KR +        +  K        + +E   L++VF       I+L++ +   +++
Sbjct: 517 FSFAKRMNLDQLMKIKQK-KLQNIFRFKEGDE---LISVFLEEKLKNIVLITTQNRALKM 572

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 573 SISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 608


>gi|330939845|gb|EGH43078.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 578

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 172/630 (27%), Positives = 286/630 (45%), Gaps = 69/630 (10%)

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRT 235
           NG  GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R 
Sbjct: 1   NGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRA 60

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            +   Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  
Sbjct: 61  DLLKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPM 115

Query: 296 IADLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           +ADLRDESD +    ++ + R    ++  ++  L+  T L+S + VN+  +    KP+  
Sbjct: 116 VADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLK 175

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P  
Sbjct: 176 NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP-- 233

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + EL+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 234 -KAELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMK 266

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDE 530
           +R+E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV       + + 
Sbjct: 267 LRSEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSEN 326

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +
Sbjct: 327 ELMPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAV 378

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP  S + +G+ L   L    G     ++  PED     +   V 
Sbjct: 379 FIDSTGRSYSVAAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVI 430

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F
Sbjct: 431 ASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVF 490

Query: 709 PISAIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            IS +           +G+ G  +A  ++ ++   V+   A           + A +R +
Sbjct: 491 KISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTL 542

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKL 795
           S   E++   K +    GN      Q +  
Sbjct: 543 SLKPEDLEHYKGERGRRGNKLPRGFQRVDA 572



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 417 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLP-----AGAKVILPRPVP 471

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 472 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 516


>gi|221316455|ref|ZP_03598260.1| DNA gyrase/topoisomerase IV, subunit A [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 664

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 175/714 (24%), Positives = 326/714 (45%), Gaps = 71/714 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            T+ +I   ++N+ + Y+  ++L RA+PDLRDGLKPVHRRIL+ M         K+ K A
Sbjct: 3   TTNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMYLQKAF---KFTKSA 59

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP--PAAERYTEC 133
            ++G+VM K HPHG++  Y ++  M Q     + ++EG+GNFG        PAA+RY+E 
Sbjct: 60  NVAGQVM-KLHPHGSS--YGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEV 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + +  ++ +  K+ VDF  NYDG+ + P VL  ++P++L     GI VG +++IP+ 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRG 252
           NL E+ +  V  I+  +         +  PDF TG +I+    + +     GRG++ IRG
Sbjct: 177 NLKELTEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I      + +I +TEIPY   + A++EKI EL +  ++ ++ D++D +  +G  + I
Sbjct: 230 KAEIV-----KNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
             +R    +V+L +LY++T LQS FS NM  L    P+   +   +  ++ +R   + R 
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRG 344

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + +     + H+L GL   + ++DE + IIR S                         
Sbjct: 345 LSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSS------------------------ 380

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           +   Q + +  ++L  +          +++     I+    I+ 
Sbjct: 381 ---QDQIEPNLQKHFGIDFEQAKEVANMKLRNINREYIIKKIEDIDKFEKTIENYKMIVK 437

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S+ ++  II + L   K++    RRT+IVE   +  +   + +    + + ++  GY  +
Sbjct: 438 SQDKINQIIIKGLNETKEKYGKERRTKIVELTEVKPVRLVEEVPNYAVTIYLTKEGYCYK 497

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                        KG     ++  D V  +F       +L F S    +K ++  +    
Sbjct: 498 F------------KGNQEPNLKPGDEVLKVFETENKAEILIFGSDRVCHKVELKDIDETR 545

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A G  L N++     ++  TI+ +   +S+    +++ A  +  + +  L  F     
Sbjct: 546 ANALGTYLPNMIR----DKNITIVSYSILDSTHK--FIIAAYSNNRIAKINLEAFQGNRT 599

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              +      + ++L + T   +  + L T   + +        +  GRN+ GV
Sbjct: 600 --ILKNSYCLKQDLLDMITLEDDVSLNLLTDKSK-LTVDTKNFNLTNGRNATGV 650


>gi|47607410|gb|AAT36612.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 183/299 (61%), Positives = 238/299 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLAL 299


>gi|323651011|ref|YP_004243654.1| ATP-hydrolyzing DNA topoisomerase subunit A [Bacillus subtilis
           subsp. natto]
 gi|323461651|dbj|BAJ77067.1| subunit A of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 664

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 175/714 (24%), Positives = 327/714 (45%), Gaps = 71/714 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            T+ +I   ++N+ + Y+  ++L RA+PDLRDGLKPVHRRIL+ M         K+ K A
Sbjct: 3   TTNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMYLQKAF---KFTKSA 59

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP--PAAERYTEC 133
            ++G+VM K HPHG++  Y ++  M Q     + ++EG+GNFG        PAA+RY+E 
Sbjct: 60  NVAGQVM-KLHPHGSS--YGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEV 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + +  ++ +  K+ VDF  NYDG+ + P VL  ++P++L     GI VG +++IP+ 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRG 252
           NL E+ +  V  I+  +         +  PDF TG +I+    + +     GRG++ IRG
Sbjct: 177 NLKELTEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I      + +I +TEIPY   + A++EKI EL +  ++ ++ D++D +  +G  + I
Sbjct: 230 KAEIV-----KNEIHITEIPYSTTRQAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
             +R    +V+L +LY++T LQS FS NM  L    P+   +   +  ++ +R   + R 
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRG 344

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + +     + H+L GL   + ++DE + IIR S   +  R                  
Sbjct: 345 LSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSRDQIER------------------ 386

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           +   Q + +  ++L  +          +++     I+    I+ 
Sbjct: 387 ---------NLQKHFGIDFEQAKEVANMKLRNINREYIIKKIEDIDKFEKTIENYKMIVK 437

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S+ ++  II + L   K++    RRT+I E   +  +   + +    + + ++  GY  +
Sbjct: 438 SQDKINQIIIKGLNETKEKYGKERRTKIAELTEVKPVRLVEEVPNYAVTIYLTKEGYCYK 497

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                        KG     ++  D V  +F       +L F S    +K ++  +    
Sbjct: 498 F------------KGNQEPNLKPGDEVLKVFETENKAEILIFGSDRVCHKVELKDIDETR 545

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A G  L N++     ++  TI+ +   +S+    +++ A  +  + +  L  F     
Sbjct: 546 ANALGTYLPNMIR----DKNITIVSYSILDSTHK--FIIAAYSNNRIAKINLEAFQGNRT 599

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              +      + ++L + T   +  + L T   + +        +  GRN+ GV
Sbjct: 600 --ILKNSYCLKQDLLDMITLEDDVSLNLLTDKSK-LTVDTKNFNLTNGRNATGV 650


>gi|309807645|ref|ZP_07701587.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308169111|gb|EFO71187.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 369

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 166/368 (45%), Positives = 241/368 (65%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKR 361

Query: 368 VVVRRTKY 375
             ++   +
Sbjct: 362 RCIKTDTF 369


>gi|28916624|gb|AAO59545.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 183/299 (61%), Positives = 238/299 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGINMLAL 299


>gi|327197938|ref|YP_004306255.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
 gi|306009258|gb|ADM73653.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
          Length = 704

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 185/756 (24%), Positives = 335/756 (44%), Gaps = 64/756 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    +   + ++   Y+  V+L RAIPD RDGLKP +RRIL+ M +M      K    
Sbjct: 2   EIVEKELQHIVTDNMGQYSTYVLLSRAIPDFRDGLKPSYRRILWAMQEMKATRFTKSFNV 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           A         YHPHG+   Y  +  MAQ  S    ++ G+GNFG    +    AERYTE 
Sbjct: 62  AGAVM----LYHPHGST--YPTMVGMAQKDSQLNPMVIGKGNFGQHASELAFGAERYTEV 115

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L      ++ D+ K  VDF  NYDG+ + P V   +YP +L     GI VG +++IP+ 
Sbjct: 116 KLSAIGLDMMADVKKGGVDFIDNYDGTRRIPEVFPVKYPTILAYAQSGIGVGFSSSIPSF 175

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRG 252
           N  E+ +  +  I++ +         +  PDF TGA I+     IK+    G GSI  R 
Sbjct: 176 NTTELCEAIIKRIEDNEQT-------LLIPDFGTGAYIINDPDVIKSINENGSGSINQRA 228

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                    D  +I+V EIPY   K  ++E+I +L +E ++ ++A + D S  +G  +VI
Sbjct: 229 KVEF---DKDSREIIVKEIPYGTTKEKIIERIIKLNKEDKLKEVAKVEDTSGLKGLEIVI 285

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
             KRG   + +L +LY+ T +Q+ +S N++ +N    PE+  +  ++  ++ +R +   R
Sbjct: 286 TAKRGVDLEQLLEKLYQMTPMQASYSTNLMVINREGLPEKMGVWTLIAKWLDWRTDTYQR 345

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
                +   + +  +L GL     +L+ V++IIR S                        
Sbjct: 346 MITKDIQTKQVQLEILYGLENIKDDLEHVIKIIRNS------------------------ 381

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
               D +          LS++Q   +  L+L  LT        + + SL  EI++    +
Sbjct: 382 ---TDDNVIQNLSSEFNLSKLQAERVSGLKLKNLTTTFIKKQLSSIKSLEKEIEQLEWTV 438

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR-----IVEGLLDMEDEDCIVREDMVVTVSHLG 546
               R+  +I Q++  V  +  TPR+++     IV     +   + +   ++ V V+  G
Sbjct: 439 EKPQRIHKLIVQDMKDVIAQFGTPRKSQLIDKSIVAKKAKLSPVNTVEEYNVKVIVTKDG 498

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK++PL+  R       G + +  ++ D  T          +L F++   VYK+++  L
Sbjct: 499 YVKKIPLTSLR-------GNAEIQFKEGDTPTSEIDTDNGEELLIFTNKQNVYKKQLNDL 551

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               P+  G  + +++ L +GE I  I+   +D       YV+   + G V +  +  + 
Sbjct: 552 SDTKPKDLGNYIPSLIDLEKGEEIKGIITLSKD-----TKYVLLGFEDGKVAKVNVEAYR 606

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +  K+   +  +  +L        + I+  ++  + +    S I     + + G+  
Sbjct: 607 TSTKRSKLKNGVVGKMIVLLTTLTDDVD-IMSISESNKAIVTNTSMISAKNSKATQGITN 665

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
             L +G+ +  + ++   + D  E        + ++
Sbjct: 666 QKLKEGESIKKLLVLQEDEEDNREYYRVQSAGAGKK 701



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 91/254 (35%), Gaps = 27/254 (10%)

Query: 658 RRNKLSDFIQINRSGKIAMK-LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            ++ ++ F    +S  I    +  + ++  V T  + N  ++ TK G   + P++++R  
Sbjct: 452 MKDVIAQFGTPRKSQLIDKSIVAKKAKLSPVNTVEEYNVKVIVTKDGYVKKIPLTSLR-- 509

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                 G   I   +GD           D D  E +    +     +    D  +     
Sbjct: 510 ------GNAEIQFKEGD-----TPTSEIDTDNGEELLIFTNKQNVYKKQLNDLSDTKPKD 558

Query: 777 NDSSVEGNISEERCQE------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
             + +   I  E+ +E      L    +++L   E G   + +   +R S +  K     
Sbjct: 559 LGNYIPSLIDLEKGEEIKGIITLSKDTKYVLLGFEDGKVAKVNVEAYRTSTKRSKLKNGV 618

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAKDE 889
                     +V +  + D+  I+ +S+    I    + I    S+AT+G+      + E
Sbjct: 619 VGKM------IVLLTTLTDDVDIMSISESNKAIVTNTSMISAKNSKATQGITNQKLKEGE 672

Query: 890 RVVSVERIRESEIV 903
            +  +  ++E E  
Sbjct: 673 SIKKLLVLQEDEED 686


>gi|45386065|gb|AAS59850.1| GyrM [uncultured bacterium]
          Length = 306

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 174/302 (57%), Positives = 229/302 (75%), Gaps = 1/302 (0%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM +     + Y
Sbjct: 6   DNDRIVKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMGINNVSTQPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RMAQ+W++R  L++GQG FGSVDGD PAA RYT
Sbjct: 66  KKCARVVGEVLGKYHPHGDSSVYGALGRMAQEWNMRYTLVDGQGTFGSVDGDSPAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL K+TVD   N+D S  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 126 ECRLSKMGEHIMDDLDKETVDMVNNFDDSLVEPSVMPTKIPNLLVNGGNGIAVGMATNMP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+DGC A IDNPDID D LM+ I GPDFPTGA I G  G+++AY TGRG IV+R
Sbjct: 186 THNLGEVIDGCCAYIDNPDIDTDGLMQYIPGPDFPTGAYIYGLAGVRDAYETGRGRIVMR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  E +I  +A++ DES RQG R+V
Sbjct: 246 AKAEIESTET-HDKIVVTEIPYGVNKADLVKYIADLANEHKIEGVANVNDESGRQGMRIV 304

Query: 312 IE 313
           ++
Sbjct: 305 VD 306


>gi|315930381|gb|EFV09458.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 303

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 163/299 (54%), Positives = 223/299 (74%), Gaps = 1/299 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 186 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES+++G R
Sbjct: 246 RAKTHIE-KKTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIR 303


>gi|4099112|gb|AAD00551.1| topoisomerase II ParC [Mycoplasma arthritidis]
          Length = 450

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 174/475 (36%), Positives = 264/475 (55%), Gaps = 28/475 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+          + I   ++ D M   +  Y+  +I  RAIPD RDGLKPV RRIL+ M
Sbjct: 1   MTKKQKEEMYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  N+ + K A+I GEVMG+YHPHG+++IY+AL RM+Q+W     LIE  GN GS+
Sbjct: 61  YGLKLYNNQAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL+K +  +L DL +  V   PN+D +  EPVVL +  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT IP HNL EV+D  + +I NP I L+ L +I++GPDFPTG VI G  GI  A
Sbjct: 181 GIAAGFATEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQA 240

Query: 241 YATGRGSIVIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + TG+G I I         E        I + E P+ V K+ ++  I  LV +K I  + 
Sbjct: 241 FETGQGKINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVK 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++RD+S+R+G+ + +EL+  A+A+ I+N L   T L+  ++ NMVA++   P+   L  +
Sbjct: 301 EVRDQSNREGFSIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQML 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  +++  +++  +  ++ L K   R  ++ G        DEV+R+I+ S N +    E 
Sbjct: 361 LFTYLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEA 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                         T   + +Q  AI ELRL +L+ + + +
Sbjct: 421 LEK-------------------------TFGFTNIQATAIAELRLYKLSKMDQLE 450


>gi|227518803|ref|ZP_03948852.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
 gi|227073716|gb|EEI11679.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
          Length = 334

 Score =  328 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 163/330 (49%), Positives = 237/330 (71%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVN 340
           V+ELK+  +A+ ILN L++ T LQ  ++ N
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFN 334


>gi|121591636|ref|ZP_01678880.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
 gi|121546507|gb|EAX56720.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
          Length = 367

 Score =  328 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 156/369 (42%), Positives = 237/369 (64%), Gaps = 10/369 (2%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
           +    ++ + R      D+++N L+  T L+  F VN+  +    +P+   L+ IL  ++
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356

Query: 363 AFREEVVVR 371
           +FR +    
Sbjct: 357 SFRRKRYAH 365


>gi|213865327|ref|ZP_03387446.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 357

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 213/388 (54%), Gaps = 59/388 (15%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L
Sbjct: 1   TANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL 60

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
            + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E
Sbjct: 61  LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYE 120

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              N   V  AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +
Sbjct: 121 EGVN---VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFS 177

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+ VRF   A+R    R + GVRGI LA  D+V+S+                      
Sbjct: 178 AAGKVVRFKEDAVRAMG-RTATGVRGIKLAGDDKVVSLI--------------------- 215

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                           +   E  ILTV++ G+GKRT++ ++   
Sbjct: 216 --------------------------------IPRGEGAILTVTQNGYGKRTAADEYPTK 243

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R+ +G+ +  V++ N  G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV
Sbjct: 244 SRATQGVISIKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGV 301

Query: 881 VIFSTAKDERVVSVERIRESEIVDEAES 908
           ++  TA+DE VV ++R+ E    +E ++
Sbjct: 302 ILIRTAEDENVVGLQRVAEPVDDEELDA 329


>gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 622

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 163/613 (26%), Positives = 284/613 (46%), Gaps = 70/613 (11%)

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           ++ L   TVDF P Y+G  +EP ++   +PN+L NG  GIAVGMATNIP+HN+ EV+D  
Sbjct: 1   MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSH------ 255
           + +IDNP ++ + LME++ GPDF TG  ++     +  AY TGRGS  +RGV H      
Sbjct: 61  LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120

Query: 256 -------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                  IE+  G + Q+V++EIPYQV K  ++E+IA+ + +K++  + D+RDESD    
Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREE 367
            V++   R    D++   +++ T +++ F +NM  L+  + P    L  +L+ + A + E
Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRT+Y L +   R  ++ G  +A  NLD V+ IIR+   P+                
Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEPKAV-------------- 286

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AIL +RL  L  L   +++ E + L  E +E 
Sbjct: 287 ---------------MMAEFSLTDRQAEAILNMRLRSLRKLEEMELKQEKSELLAEQEEL 331

Query: 488 LDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLLDME--DEDCIVREDMVV 540
             +L S +R    +K++L +++ +         RRTRI E    +E   +  I +E + V
Sbjct: 332 NKLLESPARQRTRLKKDLRALRKDYAEDTALGARRTRIEEAAPAVEFSMDAMIEKEPVTV 391

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G+++     V  AQ            ++ D +  +    T   +L   S G  Y 
Sbjct: 392 ILSQKGWIRAAKGHVDLAQE--------FKYKEGDALAFILHAQTTDKLLIAGSDGRFYT 443

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
               +LP    +  G+ +  ++ L    +I  +M   E         ++ A+  G     
Sbjct: 444 LGADKLPGA--RGFGEPVRTMIDLPAETQIAAMMVHKE------GGKLLLASSIGKGFIA 495

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
           +  + +   + GK  + L    ++  +    +  + +    +  + + F +  + V A  
Sbjct: 496 ETKELLAETKKGKQVVNLKGDAKLQVIREVPENHDHVAAVGENRKLIVFNLEEMPVMA-- 553

Query: 720 NSVGVRGISLAKG 732
              GV       G
Sbjct: 554 RGQGVMLQRYRDG 566


>gi|46019126|emb|CAE52027.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 293

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 179/293 (61%), Positives = 232/293 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP 
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPA 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIQELMEYIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
           +LVR+K+I  I DLRDESDR G RVVIE++R A+A VILN LY+ T+LQ+ F 
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRVVIEIRRDANAHVILNNLYKQTALQTSFG 293


>gi|13810781|gb|AAK40035.1|AF272025_1 DNA gyrase subunit A [Bacillus vallismortis]
          Length = 301

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 180/301 (59%), Positives = 239/301 (79%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L
Sbjct: 1   PVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYML 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R
Sbjct: 61  VDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME+I GPDFPT   
Sbjct: 121 FPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDLMEVIPGPDFPTAGQ 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 181 ILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 240

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 241 KKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 300

Query: 351 R 351
            
Sbjct: 301 V 301


>gi|12597946|gb|AAB67040.2| gyrase A subunit [Pseudomonas stutzeri]
          Length = 275

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 166/273 (60%), Positives = 207/273 (75%), Gaps = 1/273 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMARLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+ +I NPDI +D LM  I GPDFPT ++I  R GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLVLIANPDISIDELMTHIPGPDFPTASIINSRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLE 282
           R  S IE       EQIV+TE+PYQ+NKA ++E
Sbjct: 243 RARSIIEDIDKVGAEQIVITELPYQLNKARLIE 275


>gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis]
          Length = 386

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 232/373 (62%), Gaps = 10/373 (2%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +
Sbjct: 1   IGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           S R  L++GQGN+G+ D     AA RYTE RL K A  LL +L + TVD+ PN+DG+ QE
Sbjct: 61  SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GP
Sbjct: 121 PKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGP 180

Query: 224 DFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           DFPT A +I  R  I+  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE
Sbjct: 181 DFPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKEDGS-----AVITALPHQVSGAKVLE 235

Query: 283 KIAELVREKRIVDIADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +IA  +R K++  + DLRDESD +     V++        D +++ L+  T L+  + +N
Sbjct: 236 QIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRIN 295

Query: 341 MVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           M  +    +P    L+ IL  ++ FR + V  R  + L K   R H+L GL IA  N+DE
Sbjct: 296 MNMIGLDNRPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDE 355

Query: 400 VVRIIRFSPNPET 412
           V+ IIR   +P+ 
Sbjct: 356 VIHIIRTEDDPKP 368


>gi|307069700|ref|YP_003878177.1| DNA gyrase subunit A [Candidatus Zinderia insecticola CARI]
 gi|306482960|gb|ADM89831.1| DNA gyrase A subunit [Candidatus Zinderia insecticola CARI]
          Length = 511

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 193/494 (39%), Positives = 309/494 (62%), Gaps = 10/494 (2%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M NSY+ YAINVI  RA+PD+ DGLKPVHRRIL+ M ++   +   ++KCARI GEVMGK
Sbjct: 1   MSNSYINYAINVISNRALPDIIDGLKPVHRRILYTMYKIKNNYKNNFIKCARIVGEVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDAL RMAQ++SL+  LI+GQGNFGS+DGD  AA RYTEC+L K ++    
Sbjct: 61  YHPHGDNSIYDALVRMAQNFSLKYTLIKGQGNFGSIDGDNAAAMRYTECKLNKISNEFFH 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  NYD   +EP+VL  R PN+L+NG  GIAVGM+TNIP HN  + ++  + 
Sbjct: 121 DINKNTVKFINNYDNKEKEPLVLPCRIPNLLINGSYGIAVGMSTNIPPHNFTDSINTAIY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++   +  +  L++I++ PDFPTG  I+  + + NAY  G+GS+ I      EK +  + 
Sbjct: 181 LLLFSECKIKDLIKILKAPDFPTGGNIIKISKLHNAYYYGKGSVTINSKFIFEKINK-KT 239

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQ+NK  +LE+I +L++ K+I  I +L+DES++ G R+VIELK+  + + IL
Sbjct: 240 NIIITEIPYQINKKKILEQIIKLIKNKKINFINNLKDESNKLGIRIVIELKKNLNKNKIL 299

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L++ TSLQ   ++N++AL    P++  L  IL  F+ +R+++++++ K++L K + + 
Sbjct: 300 KILFKKTSLQHTININIIALIKNIPKKLNLKKILIYFIKYRKKLIIKKLKFILKKLKKKK 359

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA---------SDIKDLIDLID 435
           ++L G  + + N+++ ++I++ S N   A + +   +W           +          
Sbjct: 360 YLLEGFVVVINNINKFIKIVKKSKNNIEAIKNITSNNWKLFIKLKIINFNKKNKKYIKNI 419

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                I       +S +Q++ +L+LRL ++  L    I  +   + I+I     IL  ++
Sbjct: 420 KKKIKIPYTKKYKISVIQSKLVLKLRLNKIIKLESYKIFKKYKLIIIKILIYFIILKKKN 479

Query: 496 RLLGIIKQELLSVK 509
           ++  +I +EL  +K
Sbjct: 480 KIYDVIFEELNYIK 493


>gi|67463753|pdb|1ZI0|A Chain A, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
 gi|67463754|pdb|1ZI0|B Chain B, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
          Length = 307

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 132/365 (36%), Positives = 206/365 (56%), Gaps = 59/365 (16%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS
Sbjct: 2   QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 61

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  E E       V  AT +
Sbjct: 62  RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVK---VFMATAN 118

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R
Sbjct: 119 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 178

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                N+ GVRGI L +GD+V+S+ +     A                            
Sbjct: 179 AMG-CNTTGVRGIRLGEGDKVVSLIVPRGDGA---------------------------- 209

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    ILT ++ G+GKRT+  ++   +R+ KG+ +  V++
Sbjct: 210 -------------------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 244

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +V    V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV +
Sbjct: 245 RN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 302

Query: 895 ERIRE 899
           +R+ E
Sbjct: 303 QRVAE 307



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E  ++T+S +G+ K     ++    R GKG  A  + + + I  L+     N +D I+
Sbjct: 1   TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA---NTHDHIL 57

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
             S +G +  + V ++  A+R  +G   V +    +DER+ ++  + E E 
Sbjct: 58  CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE 108


>gi|56159862|gb|AAV80742.1| gyrase subunit A [Bacillus sp. NRRL B-23935]
          Length = 270

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 165/270 (61%), Positives = 213/270 (78%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME 
Sbjct: 121 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYR 309
           ++EKIA+LVR+K+I  I DLRDES R G R
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESARNGMR 270


>gi|261886134|ref|ZP_06010173.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 430

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 141/459 (30%), Positives = 231/459 (50%), Gaps = 33/459 (7%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L ++Q+ AIL++RL++L GL R+ +  EL  +   I++   IL S + +  II+ 
Sbjct: 1   MAKFGLFKLQSNAILDMRLSKLPGLEREKLAAELKEILELIEKLDAILKSETLIGNIIRV 60

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGG
Sbjct: 61  ELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGG 120

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG+  V   D+DF+   F   +H +++F +  G +Y  KV+++P GS  A+GKA++N++S
Sbjct: 121 KGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLIS 180

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L   E+I  I+P  + + S +   + F TK+G V+R  LS+F  I   G  A+ LD  DE
Sbjct: 181 LQADEKIKAIIPTTDFDESKS---LAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDE 237

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD----QVISMA 739
           +++V     E                       +  +  GV  +     D     + S  
Sbjct: 238 LVTVVIANSEP----------------DESYDDSFEDGEGVSNLQTISEDNSENSLESGK 281

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +  +    R+  G T        D  V   + E   QE       
Sbjct: 282 MLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKENLDEVVGAVVIENDSQE------- 334

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL+VS+KG GKRT++ ++R+ +R GKG+    ++   +   LV V  V++   ++ ++  
Sbjct: 335 ILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTP--KTKDLVGVVMVDEEMDLMALTSS 392

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +IRV +  IR A R T GV++ +    + VVS+ R  
Sbjct: 393 GKMIRVDMQSIRKAGRNTSGVIVVNVD-GDEVVSIARCP 430



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 29/264 (10%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  TC   + ++  T
Sbjct: 91  PNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVT 150

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  ISL   +++   AI+   D D  + + +   
Sbjct: 151 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLISLQADEKIK--AIIPTTDFDESKSLAFFTK 207

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               +R    + + I S+   +    +  E     +   E           G+  S+   
Sbjct: 208 NGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQ- 266

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                         +S+ N   +L           +  V+ KG  I+  +N++R   R +
Sbjct: 267 -------------TISEDNSENSL------ESGKMLFAVTKKGMCIKFALNKVRQIGRVS 307

Query: 878 KGVVIFSTAKD-ERVVSVERIRES 900
           +GV      ++ + VV    I   
Sbjct: 308 RGVTAIRFKENLDEVVGAVVIEND 331



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 58/171 (33%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E  ++T++ +G+ KR  S  +    R GKG  A      +    + + F    +D 
Sbjct: 89  LIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDD---FIESFFTCMSHDT 145

Query: 853 IILVSDKGTLIRVPVNEIR----------------------------------------- 871
           ++ V+D+G L  + V +I                                          
Sbjct: 146 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKSLAFF 205

Query: 872 ----IASRA---------TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
               I  R          + GV   +   ++ +V+V  I  SE  +  + +
Sbjct: 206 TKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTV-VIANSEPDESYDDS 255


>gi|218679283|ref|ZP_03527180.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 316

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 218/315 (69%), Positives = 260/315 (82%)

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           LNG KPE+  L+ +L+AFV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+
Sbjct: 2   LNGGKPEQLALLDMLRAFVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRV 61

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q RAILELRLA
Sbjct: 62  IRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLA 121

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           RLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G
Sbjct: 122 RLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDG 181

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
            L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V
Sbjct: 182 GLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVV 241

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW
Sbjct: 242 NTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASW 301

Query: 644 NNLYVVFATKHGNVR 658
           +NL V+F+T  G VR
Sbjct: 302 DNLDVMFSTTRGTVR 316



 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 84/206 (40%), Gaps = 12/206 (5%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + LA+   +    I    +   +E   Y+  +S++ R+ 
Sbjct: 97  HRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQ 156

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+ +++++      + +     E   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 157 TIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 216

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R GKG         + +  L   F VN +  ++  S +G + +  V  + I +  ++G
Sbjct: 217 QRRGGKGRSGMTTRDEDFVSRL---FVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRG 273

Query: 880 VVIFS---TAKDERVVSVERIRESEI 902
             + +       ER+ ++  + E E 
Sbjct: 274 KALINMLPLEPGERITTILPLPEDEA 299


>gi|153820158|ref|ZP_01972825.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
 gi|126509298|gb|EAZ71892.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
          Length = 343

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 150/341 (43%), Positives = 224/341 (65%), Gaps = 9/341 (2%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT A I+  T  ++  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296

Query: 306 QGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVAL 344
           +    ++ + R      D+++N L+  T L+  F VN+  +
Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMI 337


>gi|328957566|ref|YP_004374952.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673890|gb|AEB29936.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 325

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 164/325 (50%), Positives = 230/325 (70%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  G V+G 
Sbjct: 1   MGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTSDKGFRKSAKTVGNVIGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ R++Q+W  R +LIE  GN GS+DGDPPAA RYTE RL K +  L+ 
Sbjct: 61  YHPHGDSSVYEAMVRLSQNWKQREVLIEMHGNNGSMDGDPPAAMRYTEARLSKISAELVR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF  N+D + +EP V  A YPN+LVNG  GI+ G AT+IP HNLGEV+D  V 
Sbjct: 121 DIDKETVDFVLNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPPHNLGEVIDATVH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+PD  +  LM+ I+GPDFPTGA++ G  GIK AY TG+G I++R  + IE+  G +E
Sbjct: 181 LIDHPDASVSDLMQHIKGPDFPTGAILQGVAGIKQAYETGKGKIIVRSKTRIEEVRGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+ EIPY+VNKA ++ K+ E+   K++  IA++RDESDR G ++V+ELK+ A+A  IL
Sbjct: 241 QIVINEIPYEVNKAVLVRKMDEIRLNKKVDGIAEVRDESDRNGLQIVVELKKEANAKGIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKP 349
           N L + T LQ  ++ NMVA++  K 
Sbjct: 301 NYLLKNTDLQVAYNFNMVAIDKKKT 325


>gi|227873176|ref|ZP_03991467.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841007|gb|EEJ51346.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 409

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 224/442 (50%), Gaps = 62/442 (14%)

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           + R+ + NE   L  +I    +IL    RLL +IK+EL  + D+    R+T      + +
Sbjct: 1   MERERLENEYQDLLAKIAYYKEILGDERRLLAVIKEELDVIADKYGEDRKTSFSYDDI-L 59

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + ED I  +D+V+T + LGY+KR+    +R Q RGGKG  G+   ++D++ DLF+ + H 
Sbjct: 60  DAEDLIADDDVVITSTSLGYIKRMSPENFRQQNRGGKGIKGMQTIEKDYIEDLFMTTNHH 119

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++FF+++G V++ K + +P  S  ARG AL+N+L L +GE++   +   + +   +   
Sbjct: 120 YIMFFTNMGRVFRIKGYEIPEASRTARGTALVNLLPLQEGEKVNASLCLRDPKDEQD--- 176

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  TK G V++  LS++  + R+G IA+ L   D+++  +  +++ +I+L TK G  ++
Sbjct: 177 LILTTKSGMVKKTALSEYANVRRNGLIAISLKEDDQLIEAKLLSKDENIILVTKKGMAIQ 236

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F    +R   GR+S+GV GI L  GD+VI M                             
Sbjct: 237 FNEKDVR-RTGRSSMGVIGIRLNDGDEVIGM----------------------------- 266

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                   +   + + +L VSEKG+GK T    F+  NR GKG+
Sbjct: 267 ------------------------QESSQGENMLVVSEKGYGKLTEKSAFKAQNRGGKGM 302

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           R   +++  + G LV     + + +I+L++ +G +IR+ +  I I  R   GV + +  K
Sbjct: 303 RCYKITE--KTGDLVGFKLCDQDREILLITTEGIMIRMSLENISIIGRNASGVKLMNLDK 360

Query: 888 DE--RVVSVERIRESEIVDEAE 907
           D    + SV ++RESE   E +
Sbjct: 361 DGDTTIASVAKVRESEGDGEED 382



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 103/249 (41%), Gaps = 17/249 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E  ++  +  G VK+  LS Y   RR   G   + ++++D + +  ++S   +++  + 
Sbjct: 173 DEQDLILTTKSGMVKKTALSEYANVRR--NGLIAISLKEDDQLIEAKLLSKDENIILVTK 230

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +      + G   +  + LN G+ +  +      + S     ++  ++ 
Sbjct: 231 KGMAIQFNEKDVRRTGRSSMG---VIGIRLNDGDEVIGM------QESSQGENMLVVSEK 281

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +  + S F   NR GK        ++   ++  + C Q+ +ILL T  G  +R  + 
Sbjct: 282 GYGKLTEKSAFKAQNRGGKGMRCYKITEKTGDLVGFKLCDQDREILLITTEGIMIRMSL- 340

Query: 712 AIRVFAGRNSVGVRGISLAKGDQ--VISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                 GRN+ GV+ ++L K     + S+A V  ++ D +E +       A   +   + 
Sbjct: 341 ENISIIGRNASGVKLMNLDKDGDTTIASVAKVRESEGDGEEDLETDPGEDADTEIAEINE 400

Query: 770 EEITSLKND 778
           E+    + +
Sbjct: 401 EDTKENQEE 409


>gi|166214662|ref|ZP_02240697.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166204152|gb|EDR48632.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
          Length = 265

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 158/260 (60%), Positives = 200/260 (76%), Gaps = 1/260 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  
Sbjct: 186 NLSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIP 272
           + +E      RE I+V EIP
Sbjct: 246 AEVEADAKTGRETIIVHEIP 265


>gi|289672551|ref|ZP_06493441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 345

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 144/335 (42%), Positives = 216/335 (64%), Gaps = 9/335 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT++P 
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIAVGMATDVPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIR 251
           HNL EV   CV ++D+P   +  L E I GPD+PT A +I  R  +   Y TGRGS+ +R
Sbjct: 190 HNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +    +
Sbjct: 250 AVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVAL 344
           + + R    ++  ++  L+  T L+S + VN+  +
Sbjct: 305 VIIPRSNRVELDELMQHLFATTELESSYRVNINII 339


>gi|84994460|ref|XP_951952.1| topoisomerase IV subunit A [Theileria annulata strain Ankara]
 gi|65302113|emb|CAI74220.1| topoisomerase IV subunit A, putative [Theileria annulata]
          Length = 993

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 206/821 (25%), Positives = 378/821 (46%), Gaps = 124/821 (15%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + +E++ +  + + D M +S+L YA+++ILGRA+PD RDGLK VHRRI++ M  + ++ 
Sbjct: 91  ENYDEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDP 150

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N +Y KCA++ G+V+G YHPHG+ ++YDAL R++QD+ +++ LI+G GNFGS + DPPAA
Sbjct: 151 NGQYRKCAKVVGDVLGNYHPHGDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAA 209

Query: 128 ERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   +  ++ +D+  +T+D+ PN+D +  EP+VL  R PN+L+NG  GIAVG+
Sbjct: 210 MRYTECRLTNFSKTVMLNDINFNTIDYTPNFDNTNIEPMVLPCRLPNILINGSSGIAVGL 269

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDI---------------------DLDALMEIIRGPDF 225
           ATNIP HN  E+++  +  I                              ++  + GPDF
Sbjct: 270 ATNIPPHNPAEIINATIQYIKYILYIDIIHRSHLKTDATVDDVNGDKSAEVVNEVLGPDF 329

Query: 226 PTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           PTG VI   R  ++  Y +G+G+++I+     E+    R  IV+ +IPY      ++E I
Sbjct: 330 PTGGVIRTTREAMRKIYESGKGTVLIQSRFVFEE--KLRISIVINQIPYNTRINDIIENI 387

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASA----DVILNQLYRYTSLQSLFSVN 340
              ++   I+ + D++DESDR G R+V+ELKR  S+      I+ +L R T  +  ++ N
Sbjct: 388 NRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMTKLERLT--EYNYNCN 445

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            + L+  +P RF+L  ILK ++ FR EV+ R+ K+LL K +    ++        N++ +
Sbjct: 446 FITLDQDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAYITVYLNINTI 505

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +    F  + +   + L +                             L++ Q ++++ L
Sbjct: 506 IN--SFQNHHKGVYKLLKEE--------------------------FKLNDDQMKSVMRL 537

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRRTR 519
            L +L  L  +++  +      +I+   +IL + + L   I  +L  +++      R T 
Sbjct: 538 TLRQLNQLNIENLNEKSAEYTKQIEFYENILKNDNNLYSEIISDLTELREHFKNIKRNTL 597

Query: 520 IV-----------------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS-------- 554
           I+                 EG  D +    +  +D ++  + LG + ++ L         
Sbjct: 598 IIYTDEPNSFENTIEGEGAEGNTDGKVGSVVESDDNIIIYNRLGRISKIKLDKKFYKSNK 657

Query: 555 --------------------VYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVL 590
                                 +A+    K  +   +   D    L +     +    ++
Sbjct: 658 NKTLNTPNPVHTHSTSPDESQDKAETPSVKKSAKKSLNKIDETEALEVGYCSNNNSNKIM 717

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G ++     +L +     +G  +   L +N  + I  +    ++        ++ 
Sbjct: 718 MIMKNGRIFHVNSSKLKLCK---KGYDIFKYLGINNDQLIEYVTSTGKN----IGDIIMV 770

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI------LLTTKLGQ 704
               G +               ++ +KL+ +D+ +        + I       + TK G 
Sbjct: 771 GYGSGVMSVFNAKKLNFKLSKTRLNLKLNLKDKEIRFFFNCTLDHILQNPFLFICTKRGY 830

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           C++  +  I     +    +R I + KGD++ S  +     
Sbjct: 831 CIKINLKNIIEKFDKKKN-LRLIRMYKGDELASSCLTNDQG 870


>gi|46191316|ref|ZP_00206762.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
          Length = 720

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 187/776 (24%), Positives = 325/776 (41%), Gaps = 143/776 (18%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGR
Sbjct: 1   MATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +DR
Sbjct: 61  GTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDR 120

Query: 306 QG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  
Sbjct: 121 HNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDH 180

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM      
Sbjct: 181 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLMV----- 235

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L EVQ + IL+LRL RLT + R ++  E + L   I
Sbjct: 236 ---------------------VFDLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRI 274

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR--------- 535
           +E   IL+S   L  ++  E+     +  +PRRT +++   D      + +         
Sbjct: 275 EELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVAQGAGASGVSK 334

Query: 536 ---EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED----------------- 575
              E +    +       V  +   A++ G +      ++ ED                 
Sbjct: 335 SALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTT 394

Query: 576 --------------------FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR- 614
                                +T +F  ST  +    +S G +    V  LP     A  
Sbjct: 395 PSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPATATL 454

Query: 615 ----GKALINILSLNQ------GERITTIMPF---------PEDESSWNN-------LYV 648
               G     ++ + +      GER+ T +            +DES             +
Sbjct: 455 SLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSL 514

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T++G ++R        ++      + L   DE++       ++ ++  +     + F
Sbjct: 515 AIGTRNGVIKRWNREAPTTMDS--WPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTF 572

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + G+ GI LA+G +V +  +V      +        +   +  L SG 
Sbjct: 573 EAKNVRP-QGRTAGGMAGIKLAEGARVAAFNVVPAGKVAW-------TYEEGENGLTSGS 624

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              + ++  DS                     L  +E G  K T    +    R+  G+R
Sbjct: 625 GAVVLTVAGDSDA-------------------LPGTENGAAKVTPLEMYPTKGRATGGVR 665

Query: 829 ATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +    K      L  V ++P      +   +  G+ + +P  ++R   R   GV +
Sbjct: 666 SQRFLKGQNTLILAWVGLYP------LHASTSAGSPVELPKPDMR---RDGSGVDL 712


>gi|163803901|ref|ZP_02197741.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
 gi|159172300|gb|EDP57188.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
          Length = 332

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 146/334 (43%), Positives = 219/334 (65%), Gaps = 9/334 (2%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGR 245
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+     I+  Y +GR
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRSGR 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD 
Sbjct: 242 GSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296

Query: 306 QGYR--VVIELKRGASADVILNQLYRYTSLQSLF 337
           +     VV+        D+++N L+  T L+  +
Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSY 330


>gi|13810771|gb|AAK40030.1|AF272020_1 DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 270

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 166/270 (61%), Positives = 217/270 (80%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +LVR+K+I  I DLRDESDR G R+VIE++
Sbjct: 241 DLVRDKKIEGITDLRDESDRTGMRIVIEIR 270


>gi|145633277|ref|ZP_01789008.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986123|gb|EDJ92713.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 267

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 152/268 (56%), Positives = 195/268 (72%), Gaps = 7/268 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVV 268
           Y TGRG + +R  + +E       ++  
Sbjct: 234 YRTGRGKVYVRARATVETNEKGASKLSC 261


>gi|290790184|pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
 gi|290790185|pdb|3L6V|B Chain B, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
          Length = 370

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 134/381 (35%), Positives = 203/381 (53%), Gaps = 24/381 (6%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
            D I  ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++
Sbjct: 1   MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV 
Sbjct: 61  LTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVF 117

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT++G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF 
Sbjct: 118 MATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFG 177

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +R    R + GVRGI LAKG++V+S+ +   A    DE              +  ++
Sbjct: 178 ESTVRSMG-RTATGVRGIRLAKGEEVVSLIVSERAGGVEDE--------------VEDES 222

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            E      D +    I      ++     +ILT +E G+GKRT   ++    R  +G+  
Sbjct: 223 AEEVVETTDGAEPAVIDVADNGDVA----YILTATENGYGKRTPLAEYPRKGRGTQGVIG 278

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E
Sbjct: 279 IQTTERN--GKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 336

Query: 890 RVVSVERIRESEIVDEAESTE 910
           ++ +VER+  S    E    E
Sbjct: 337 KLQAVERLDASLEEPEDVVDE 357



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE----GLLDMEDEDCIVREDMVVTVSH 544
            +      +  I+ +    V+DE++      +VE        + D         ++T + 
Sbjct: 195 RLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATE 254

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
            GY KR PL+ Y  + RG +G  G+    R+   V  + + ST   V+  S  G + + +
Sbjct: 255 NGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGST-DEVMLISDGGTLVRTR 313

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +       +G   + ++ L++GE++  +           +
Sbjct: 314 GSEISRVGRNTQG---VTLIRLSKGEKLQAVERLDASLEEPED 353


>gi|77169328|gb|ABA63601.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMAYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77168988|gb|ABA63431.1| gyrase subunit A [Clostridium perfringens]
 gi|77169130|gb|ABA63502.1| gyrase subunit A [Clostridium perfringens]
 gi|77169146|gb|ABA63510.1| gyrase subunit A [Clostridium perfringens]
 gi|77169150|gb|ABA63512.1| gyrase subunit A [Clostridium perfringens]
 gi|77169158|gb|ABA63516.1| gyrase subunit A [Clostridium perfringens]
 gi|77169294|gb|ABA63584.1| gyrase subunit A [Clostridium perfringens]
 gi|77169350|gb|ABA63612.1| gyrase subunit A [Clostridium perfringens]
 gi|77169352|gb|ABA63613.1| gyrase subunit A [Clostridium perfringens]
 gi|77169404|gb|ABA63639.1| gyrase subunit A [Clostridium perfringens]
 gi|77169406|gb|ABA63640.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169256|gb|ABA63565.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77168996|gb|ABA63435.1| gyrase subunit A [Clostridium perfringens]
 gi|77168998|gb|ABA63436.1| gyrase subunit A [Clostridium perfringens]
 gi|77169002|gb|ABA63438.1| gyrase subunit A [Clostridium perfringens]
 gi|77169012|gb|ABA63443.1| gyrase subunit A [Clostridium perfringens]
 gi|77169014|gb|ABA63444.1| gyrase subunit A [Clostridium perfringens]
 gi|77169016|gb|ABA63445.1| gyrase subunit A [Clostridium perfringens]
 gi|77169018|gb|ABA63446.1| gyrase subunit A [Clostridium perfringens]
 gi|77169024|gb|ABA63449.1| gyrase subunit A [Clostridium perfringens]
 gi|77169030|gb|ABA63452.1| gyrase subunit A [Clostridium perfringens]
 gi|77169032|gb|ABA63453.1| gyrase subunit A [Clostridium perfringens]
 gi|77169034|gb|ABA63454.1| gyrase subunit A [Clostridium perfringens]
 gi|77169072|gb|ABA63473.1| gyrase subunit A [Clostridium perfringens]
 gi|77169102|gb|ABA63488.1| gyrase subunit A [Clostridium perfringens]
 gi|77169104|gb|ABA63489.1| gyrase subunit A [Clostridium perfringens]
 gi|77169194|gb|ABA63534.1| gyrase subunit A [Clostridium perfringens]
 gi|77169196|gb|ABA63535.1| gyrase subunit A [Clostridium perfringens]
 gi|77169206|gb|ABA63540.1| gyrase subunit A [Clostridium perfringens]
 gi|77169208|gb|ABA63541.1| gyrase subunit A [Clostridium perfringens]
 gi|77169240|gb|ABA63557.1| gyrase subunit A [Clostridium perfringens]
 gi|77169276|gb|ABA63575.1| gyrase subunit A [Clostridium perfringens]
 gi|77169332|gb|ABA63603.1| gyrase subunit A [Clostridium perfringens]
 gi|77169334|gb|ABA63604.1| gyrase subunit A [Clostridium perfringens]
 gi|77169374|gb|ABA63624.1| gyrase subunit A [Clostridium perfringens]
 gi|77169380|gb|ABA63627.1| gyrase subunit A [Clostridium perfringens]
 gi|77169396|gb|ABA63635.1| gyrase subunit A [Clostridium perfringens]
 gi|77169398|gb|ABA63636.1| gyrase subunit A [Clostridium perfringens]
 gi|77169444|gb|ABA63659.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|269467763|gb|EEZ79527.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [uncultured SUP05 cluster bacterium]
          Length = 275

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 163/278 (58%), Positives = 209/278 (75%), Gaps = 3/278 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++  +  E  E     V+I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDNTDNP-EVFEPNFPIVTIEDEMRDSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL KDTVDF  NYDGS  EP VL  R PN+LVNG  
Sbjct: 120 DGDSAAAMRYTEIRMAKISHELLRDLEKDTVDFIDNYDGSESEPSVLPTRVPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+ EV++ C+ VIDN ++ +D L++II GPDFPT  +I G  GI+ A
Sbjct: 180 GIAVGMATNIPPHNIDEVINACLLVIDNDEVSIDELLDIIHGPDFPTAGIINGADGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           Y TG+G I +R  SH+E    D++ IVVTE+PYQVNKA
Sbjct: 240 YETGKGKIYLRSRSHVE--GEDKQSIVVTELPYQVNKA 275


>gi|77169138|gb|ABA63506.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 175/307 (57%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TGRG IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGRGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169106|gb|ABA63490.1| gyrase subunit A [Clostridium perfringens]
 gi|77169108|gb|ABA63491.1| gyrase subunit A [Clostridium perfringens]
 gi|77169110|gb|ABA63492.1| gyrase subunit A [Clostridium perfringens]
 gi|77169112|gb|ABA63493.1| gyrase subunit A [Clostridium perfringens]
 gi|77169114|gb|ABA63494.1| gyrase subunit A [Clostridium perfringens]
 gi|77169116|gb|ABA63495.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRRTRFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169442|gb|ABA63658.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 175/307 (57%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  +V F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYVNFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|37624524|gb|AAQ96058.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624526|gb|AAQ96059.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624528|gb|AAQ96060.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 240

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 147/239 (61%), Positives = 187/239 (78%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH
Sbjct: 61  VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAH 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EVV+
Sbjct: 121 ELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVN 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R  + +E  
Sbjct: 181 GCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARAEVEAD 239


>gi|77169132|gb|ABA63503.1| gyrase subunit A [Clostridium perfringens]
 gi|77169148|gb|ABA63511.1| gyrase subunit A [Clostridium perfringens]
 gi|77169152|gb|ABA63513.1| gyrase subunit A [Clostridium perfringens]
 gi|77169154|gb|ABA63514.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77168984|gb|ABA63429.1| gyrase subunit A [Clostridium perfringens]
 gi|77168986|gb|ABA63430.1| gyrase subunit A [Clostridium perfringens]
 gi|77168990|gb|ABA63432.1| gyrase subunit A [Clostridium perfringens]
 gi|77168994|gb|ABA63434.1| gyrase subunit A [Clostridium perfringens]
 gi|77169000|gb|ABA63437.1| gyrase subunit A [Clostridium perfringens]
 gi|77169004|gb|ABA63439.1| gyrase subunit A [Clostridium perfringens]
 gi|77169006|gb|ABA63440.1| gyrase subunit A [Clostridium perfringens]
 gi|77169008|gb|ABA63441.1| gyrase subunit A [Clostridium perfringens]
 gi|77169010|gb|ABA63442.1| gyrase subunit A [Clostridium perfringens]
 gi|77169020|gb|ABA63447.1| gyrase subunit A [Clostridium perfringens]
 gi|77169022|gb|ABA63448.1| gyrase subunit A [Clostridium perfringens]
 gi|77169026|gb|ABA63450.1| gyrase subunit A [Clostridium perfringens]
 gi|77169028|gb|ABA63451.1| gyrase subunit A [Clostridium perfringens]
 gi|77169036|gb|ABA63455.1| gyrase subunit A [Clostridium perfringens]
 gi|77169038|gb|ABA63456.1| gyrase subunit A [Clostridium perfringens]
 gi|77169040|gb|ABA63457.1| gyrase subunit A [Clostridium perfringens]
 gi|77169042|gb|ABA63458.1| gyrase subunit A [Clostridium perfringens]
 gi|77169044|gb|ABA63459.1| gyrase subunit A [Clostridium perfringens]
 gi|77169046|gb|ABA63460.1| gyrase subunit A [Clostridium perfringens]
 gi|77169048|gb|ABA63461.1| gyrase subunit A [Clostridium perfringens]
 gi|77169050|gb|ABA63462.1| gyrase subunit A [Clostridium perfringens]
 gi|77169052|gb|ABA63463.1| gyrase subunit A [Clostridium perfringens]
 gi|77169054|gb|ABA63464.1| gyrase subunit A [Clostridium perfringens]
 gi|77169056|gb|ABA63465.1| gyrase subunit A [Clostridium perfringens]
 gi|77169058|gb|ABA63466.1| gyrase subunit A [Clostridium perfringens]
 gi|77169060|gb|ABA63467.1| gyrase subunit A [Clostridium perfringens]
 gi|77169062|gb|ABA63468.1| gyrase subunit A [Clostridium perfringens]
 gi|77169064|gb|ABA63469.1| gyrase subunit A [Clostridium perfringens]
 gi|77169066|gb|ABA63470.1| gyrase subunit A [Clostridium perfringens]
 gi|77169068|gb|ABA63471.1| gyrase subunit A [Clostridium perfringens]
 gi|77169070|gb|ABA63472.1| gyrase subunit A [Clostridium perfringens]
 gi|77169074|gb|ABA63474.1| gyrase subunit A [Clostridium perfringens]
 gi|77169076|gb|ABA63475.1| gyrase subunit A [Clostridium perfringens]
 gi|77169078|gb|ABA63476.1| gyrase subunit A [Clostridium perfringens]
 gi|77169080|gb|ABA63477.1| gyrase subunit A [Clostridium perfringens]
 gi|77169084|gb|ABA63479.1| gyrase subunit A [Clostridium perfringens]
 gi|77169086|gb|ABA63480.1| gyrase subunit A [Clostridium perfringens]
 gi|77169088|gb|ABA63481.1| gyrase subunit A [Clostridium perfringens]
 gi|77169090|gb|ABA63482.1| gyrase subunit A [Clostridium perfringens]
 gi|77169092|gb|ABA63483.1| gyrase subunit A [Clostridium perfringens]
 gi|77169094|gb|ABA63484.1| gyrase subunit A [Clostridium perfringens]
 gi|77169096|gb|ABA63485.1| gyrase subunit A [Clostridium perfringens]
 gi|77169098|gb|ABA63486.1| gyrase subunit A [Clostridium perfringens]
 gi|77169118|gb|ABA63496.1| gyrase subunit A [Clostridium perfringens]
 gi|77169120|gb|ABA63497.1| gyrase subunit A [Clostridium perfringens]
 gi|77169122|gb|ABA63498.1| gyrase subunit A [Clostridium perfringens]
 gi|77169124|gb|ABA63499.1| gyrase subunit A [Clostridium perfringens]
 gi|77169126|gb|ABA63500.1| gyrase subunit A [Clostridium perfringens]
 gi|77169128|gb|ABA63501.1| gyrase subunit A [Clostridium perfringens]
 gi|77169134|gb|ABA63504.1| gyrase subunit A [Clostridium perfringens]
 gi|77169136|gb|ABA63505.1| gyrase subunit A [Clostridium perfringens]
 gi|77169140|gb|ABA63507.1| gyrase subunit A [Clostridium perfringens]
 gi|77169142|gb|ABA63508.1| gyrase subunit A [Clostridium perfringens]
 gi|77169144|gb|ABA63509.1| gyrase subunit A [Clostridium perfringens]
 gi|77169156|gb|ABA63515.1| gyrase subunit A [Clostridium perfringens]
 gi|77169160|gb|ABA63517.1| gyrase subunit A [Clostridium perfringens]
 gi|77169162|gb|ABA63518.1| gyrase subunit A [Clostridium perfringens]
 gi|77169164|gb|ABA63519.1| gyrase subunit A [Clostridium perfringens]
 gi|77169166|gb|ABA63520.1| gyrase subunit A [Clostridium perfringens]
 gi|77169168|gb|ABA63521.1| gyrase subunit A [Clostridium perfringens]
 gi|77169170|gb|ABA63522.1| gyrase subunit A [Clostridium perfringens]
 gi|77169172|gb|ABA63523.1| gyrase subunit A [Clostridium perfringens]
 gi|77169174|gb|ABA63524.1| gyrase subunit A [Clostridium perfringens]
 gi|77169176|gb|ABA63525.1| gyrase subunit A [Clostridium perfringens]
 gi|77169178|gb|ABA63526.1| gyrase subunit A [Clostridium perfringens]
 gi|77169182|gb|ABA63528.1| gyrase subunit A [Clostridium perfringens]
 gi|77169188|gb|ABA63531.1| gyrase subunit A [Clostridium perfringens]
 gi|77169192|gb|ABA63533.1| gyrase subunit A [Clostridium perfringens]
 gi|77169198|gb|ABA63536.1| gyrase subunit A [Clostridium perfringens]
 gi|77169200|gb|ABA63537.1| gyrase subunit A [Clostridium perfringens]
 gi|77169202|gb|ABA63538.1| gyrase subunit A [Clostridium perfringens]
 gi|77169204|gb|ABA63539.1| gyrase subunit A [Clostridium perfringens]
 gi|77169210|gb|ABA63542.1| gyrase subunit A [Clostridium perfringens]
 gi|77169214|gb|ABA63544.1| gyrase subunit A [Clostridium perfringens]
 gi|77169216|gb|ABA63545.1| gyrase subunit A [Clostridium perfringens]
 gi|77169218|gb|ABA63546.1| gyrase subunit A [Clostridium perfringens]
 gi|77169220|gb|ABA63547.1| gyrase subunit A [Clostridium perfringens]
 gi|77169222|gb|ABA63548.1| gyrase subunit A [Clostridium perfringens]
 gi|77169224|gb|ABA63549.1| gyrase subunit A [Clostridium perfringens]
 gi|77169226|gb|ABA63550.1| gyrase subunit A [Clostridium perfringens]
 gi|77169228|gb|ABA63551.1| gyrase subunit A [Clostridium perfringens]
 gi|77169230|gb|ABA63552.1| gyrase subunit A [Clostridium perfringens]
 gi|77169232|gb|ABA63553.1| gyrase subunit A [Clostridium perfringens]
 gi|77169234|gb|ABA63554.1| gyrase subunit A [Clostridium perfringens]
 gi|77169236|gb|ABA63555.1| gyrase subunit A [Clostridium perfringens]
 gi|77169238|gb|ABA63556.1| gyrase subunit A [Clostridium perfringens]
 gi|77169242|gb|ABA63558.1| gyrase subunit A [Clostridium perfringens]
 gi|77169244|gb|ABA63559.1| gyrase subunit A [Clostridium perfringens]
 gi|77169246|gb|ABA63560.1| gyrase subunit A [Clostridium perfringens]
 gi|77169248|gb|ABA63561.1| gyrase subunit A [Clostridium perfringens]
 gi|77169250|gb|ABA63562.1| gyrase subunit A [Clostridium perfringens]
 gi|77169252|gb|ABA63563.1| gyrase subunit A [Clostridium perfringens]
 gi|77169254|gb|ABA63564.1| gyrase subunit A [Clostridium perfringens]
 gi|77169258|gb|ABA63566.1| gyrase subunit A [Clostridium perfringens]
 gi|77169260|gb|ABA63567.1| gyrase subunit A [Clostridium perfringens]
 gi|77169262|gb|ABA63568.1| gyrase subunit A [Clostridium perfringens]
 gi|77169264|gb|ABA63569.1| gyrase subunit A [Clostridium perfringens]
 gi|77169266|gb|ABA63570.1| gyrase subunit A [Clostridium perfringens]
 gi|77169268|gb|ABA63571.1| gyrase subunit A [Clostridium perfringens]
 gi|77169270|gb|ABA63572.1| gyrase subunit A [Clostridium perfringens]
 gi|77169272|gb|ABA63573.1| gyrase subunit A [Clostridium perfringens]
 gi|77169274|gb|ABA63574.1| gyrase subunit A [Clostridium perfringens]
 gi|77169278|gb|ABA63576.1| gyrase subunit A [Clostridium perfringens]
 gi|77169280|gb|ABA63577.1| gyrase subunit A [Clostridium perfringens]
 gi|77169282|gb|ABA63578.1| gyrase subunit A [Clostridium perfringens]
 gi|77169284|gb|ABA63579.1| gyrase subunit A [Clostridium perfringens]
 gi|77169286|gb|ABA63580.1| gyrase subunit A [Clostridium perfringens]
 gi|77169288|gb|ABA63581.1| gyrase subunit A [Clostridium perfringens]
 gi|77169290|gb|ABA63582.1| gyrase subunit A [Clostridium perfringens]
 gi|77169292|gb|ABA63583.1| gyrase subunit A [Clostridium perfringens]
 gi|77169296|gb|ABA63585.1| gyrase subunit A [Clostridium perfringens]
 gi|77169298|gb|ABA63586.1| gyrase subunit A [Clostridium perfringens]
 gi|77169300|gb|ABA63587.1| gyrase subunit A [Clostridium perfringens]
 gi|77169302|gb|ABA63588.1| gyrase subunit A [Clostridium perfringens]
 gi|77169304|gb|ABA63589.1| gyrase subunit A [Clostridium perfringens]
 gi|77169306|gb|ABA63590.1| gyrase subunit A [Clostridium perfringens]
 gi|77169308|gb|ABA63591.1| gyrase subunit A [Clostridium perfringens]
 gi|77169310|gb|ABA63592.1| gyrase subunit A [Clostridium perfringens]
 gi|77169312|gb|ABA63593.1| gyrase subunit A [Clostridium perfringens]
 gi|77169314|gb|ABA63594.1| gyrase subunit A [Clostridium perfringens]
 gi|77169316|gb|ABA63595.1| gyrase subunit A [Clostridium perfringens]
 gi|77169318|gb|ABA63596.1| gyrase subunit A [Clostridium perfringens]
 gi|77169320|gb|ABA63597.1| gyrase subunit A [Clostridium perfringens]
 gi|77169322|gb|ABA63598.1| gyrase subunit A [Clostridium perfringens]
 gi|77169324|gb|ABA63599.1| gyrase subunit A [Clostridium perfringens]
 gi|77169326|gb|ABA63600.1| gyrase subunit A [Clostridium perfringens]
 gi|77169330|gb|ABA63602.1| gyrase subunit A [Clostridium perfringens]
 gi|77169336|gb|ABA63605.1| gyrase subunit A [Clostridium perfringens]
 gi|77169338|gb|ABA63606.1| gyrase subunit A [Clostridium perfringens]
 gi|77169340|gb|ABA63607.1| gyrase subunit A [Clostridium perfringens]
 gi|77169342|gb|ABA63608.1| gyrase subunit A [Clostridium perfringens]
 gi|77169344|gb|ABA63609.1| gyrase subunit A [Clostridium perfringens]
 gi|77169346|gb|ABA63610.1| gyrase subunit A [Clostridium perfringens]
 gi|77169348|gb|ABA63611.1| gyrase subunit A [Clostridium perfringens]
 gi|77169354|gb|ABA63614.1| gyrase subunit A [Clostridium perfringens]
 gi|77169356|gb|ABA63615.1| gyrase subunit A [Clostridium perfringens]
 gi|77169358|gb|ABA63616.1| gyrase subunit A [Clostridium perfringens]
 gi|77169360|gb|ABA63617.1| gyrase subunit A [Clostridium perfringens]
 gi|77169362|gb|ABA63618.1| gyrase subunit A [Clostridium perfringens]
 gi|77169364|gb|ABA63619.1| gyrase subunit A [Clostridium perfringens]
 gi|77169366|gb|ABA63620.1| gyrase subunit A [Clostridium perfringens]
 gi|77169368|gb|ABA63621.1| gyrase subunit A [Clostridium perfringens]
 gi|77169370|gb|ABA63622.1| gyrase subunit A [Clostridium perfringens]
 gi|77169376|gb|ABA63625.1| gyrase subunit A [Clostridium perfringens]
 gi|77169378|gb|ABA63626.1| gyrase subunit A [Clostridium perfringens]
 gi|77169382|gb|ABA63628.1| gyrase subunit A [Clostridium perfringens]
 gi|77169384|gb|ABA63629.1| gyrase subunit A [Clostridium perfringens]
 gi|77169386|gb|ABA63630.1| gyrase subunit A [Clostridium perfringens]
 gi|77169388|gb|ABA63631.1| gyrase subunit A [Clostridium perfringens]
 gi|77169390|gb|ABA63632.1| gyrase subunit A [Clostridium perfringens]
 gi|77169392|gb|ABA63633.1| gyrase subunit A [Clostridium perfringens]
 gi|77169394|gb|ABA63634.1| gyrase subunit A [Clostridium perfringens]
 gi|77169400|gb|ABA63637.1| gyrase subunit A [Clostridium perfringens]
 gi|77169402|gb|ABA63638.1| gyrase subunit A [Clostridium perfringens]
 gi|77169408|gb|ABA63641.1| gyrase subunit A [Clostridium perfringens]
 gi|77169410|gb|ABA63642.1| gyrase subunit A [Clostridium perfringens]
 gi|77169412|gb|ABA63643.1| gyrase subunit A [Clostridium perfringens]
 gi|77169414|gb|ABA63644.1| gyrase subunit A [Clostridium perfringens]
 gi|77169416|gb|ABA63645.1| gyrase subunit A [Clostridium perfringens]
 gi|77169418|gb|ABA63646.1| gyrase subunit A [Clostridium perfringens]
 gi|77169420|gb|ABA63647.1| gyrase subunit A [Clostridium perfringens]
 gi|77169422|gb|ABA63648.1| gyrase subunit A [Clostridium perfringens]
 gi|77169424|gb|ABA63649.1| gyrase subunit A [Clostridium perfringens]
 gi|77169426|gb|ABA63650.1| gyrase subunit A [Clostridium perfringens]
 gi|77169428|gb|ABA63651.1| gyrase subunit A [Clostridium perfringens]
 gi|77169430|gb|ABA63652.1| gyrase subunit A [Clostridium perfringens]
 gi|77169432|gb|ABA63653.1| gyrase subunit A [Clostridium perfringens]
 gi|77169434|gb|ABA63654.1| gyrase subunit A [Clostridium perfringens]
 gi|77169436|gb|ABA63655.1| gyrase subunit A [Clostridium perfringens]
 gi|77169438|gb|ABA63656.1| gyrase subunit A [Clostridium perfringens]
 gi|77169440|gb|ABA63657.1| gyrase subunit A [Clostridium perfringens]
 gi|77169446|gb|ABA63660.1| gyrase subunit A [Clostridium perfringens]
 gi|77169448|gb|ABA63661.1| gyrase subunit A [Clostridium perfringens]
 gi|77169450|gb|ABA63662.1| gyrase subunit A [Clostridium perfringens]
 gi|77169452|gb|ABA63663.1| gyrase subunit A [Clostridium perfringens]
 gi|77169454|gb|ABA63664.1| gyrase subunit A [Clostridium perfringens]
 gi|77169456|gb|ABA63665.1| gyrase subunit A [Clostridium perfringens]
 gi|77169458|gb|ABA63666.1| gyrase subunit A [Clostridium perfringens]
 gi|77169460|gb|ABA63667.1| gyrase subunit A [Clostridium perfringens]
 gi|77169462|gb|ABA63668.1| gyrase subunit A [Clostridium perfringens]
 gi|77169464|gb|ABA63669.1| gyrase subunit A [Clostridium perfringens]
 gi|77169466|gb|ABA63670.1| gyrase subunit A [Clostridium perfringens]
 gi|77169468|gb|ABA63671.1| gyrase subunit A [Clostridium perfringens]
 gi|77169470|gb|ABA63672.1| gyrase subunit A [Clostridium perfringens]
 gi|77169472|gb|ABA63673.1| gyrase subunit A [Clostridium perfringens]
 gi|77169474|gb|ABA63674.1| gyrase subunit A [Clostridium perfringens]
 gi|77169476|gb|ABA63675.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169372|gb|ABA63623.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 173/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA++V++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADIVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|13810765|gb|AAK40027.1|AF272017_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 285

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 173/285 (60%), Positives = 225/285 (78%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSV
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSV 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  
Sbjct: 61  DGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAA 120

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ A
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKA 180

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 181 YETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLR 240

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           DESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL 
Sbjct: 241 DESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALV 285


>gi|77168992|gb|ABA63433.1| gyrase subunit A [Clostridium perfringens]
 gi|77169082|gb|ABA63478.1| gyrase subunit A [Clostridium perfringens]
 gi|77169100|gb|ABA63487.1| gyrase subunit A [Clostridium perfringens]
 gi|77169180|gb|ABA63527.1| gyrase subunit A [Clostridium perfringens]
 gi|77169184|gb|ABA63529.1| gyrase subunit A [Clostridium perfringens]
 gi|77169186|gb|ABA63530.1| gyrase subunit A [Clostridium perfringens]
 gi|77169190|gb|ABA63532.1| gyrase subunit A [Clostridium perfringens]
 gi|77169212|gb|ABA63543.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 173/307 (56%), Positives = 236/307 (76%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+D+V+
Sbjct: 300 DNIDDVI 306


>gi|313625788|gb|EFR95409.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           J1-023]
          Length = 262

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 147/259 (56%), Positives = 194/259 (74%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVV 268
           +RG   IE+    +E  V 
Sbjct: 243 VRGRVDIEEKKNGKETEVT 261


>gi|284803502|emb|CBJ16551.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 262

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 160/262 (61%), Positives = 207/262 (79%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ 
Sbjct: 1   DGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNY 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG+ +EPVV
Sbjct: 61  RYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           + +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME I GPDFP
Sbjct: 121 MPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFP 180

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 181 TAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIAD 240

Query: 287 LVREKRIVDIADLRDESDRQGY 308
           LVR+K+I  I DLRDESDR G 
Sbjct: 241 LVRDKKIEGITDLRDESDRNGM 262


>gi|13810769|gb|AAK40029.1|AF272019_1 DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 161/260 (61%), Positives = 207/260 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDR 305
           +LVR+K+I  I DLRDESDR
Sbjct: 241 DLVRDKKIEGITDLRDESDR 260


>gi|37624494|gb|AAQ96043.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624496|gb|AAQ96044.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624498|gb|AAQ96045.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 246

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 148/242 (61%), Positives = 188/242 (77%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K ARI G
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  
Sbjct: 181 NGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAEVEAD 240

Query: 260 SG 261
             
Sbjct: 241 EK 242


>gi|13810763|gb|AAK40026.1|AF272016_1 DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 290

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 170/290 (58%), Positives = 226/290 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 1   MNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQELMEFIPGPDFPTAGQILGRSGIRK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 181 AYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           RDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL   +P
Sbjct: 241 RDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEP 290


>gi|110554877|gb|ABG75545.1| GyrA [Klebsiella pneumoniae]
          Length = 250

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 149/249 (59%), Positives = 190/249 (76%), Gaps = 1/249 (0%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A +D+
Sbjct: 121 ETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDD 180

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIV 267
            DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+
Sbjct: 181 EDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKSGRETII 240

Query: 268 VTEIPYQVN 276
           V EIPYQVN
Sbjct: 241 VHEIPYQVN 249


>gi|323694736|ref|ZP_08108894.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501173|gb|EGB17077.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 347

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 146/324 (45%), Positives = 214/324 (66%), Gaps = 5/324 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAEEVYLKDLDKTVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A IDNP+     L++I+ GPDFPTG +I  ++ + N Y TG G I +R  
Sbjct: 183 NLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIANKSDLLNIYETGSGRIKLRAK 242

Query: 254 SHIEKTSG--DREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             +E      D+++++++EIPY +        L  IA+LV  K++ D+ D+ ++S+++G 
Sbjct: 243 LEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTS 332
           R+V+ELK+ A  + I N LY+  S
Sbjct: 303 RIVLELKKDADIEKIKNILYKKRS 326


>gi|319826936|gb|ADV74762.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 279

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 167/279 (59%), Positives = 223/279 (79%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GN
Sbjct: 1   LYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LV
Sbjct: 61  FGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLV 120

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+G
Sbjct: 121 NGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSG 180

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I
Sbjct: 181 IRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGI 240

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
            DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 TDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 279


>gi|289677157|ref|ZP_06498047.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 358

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/359 (45%), Positives = 233/359 (64%), Gaps = 12/359 (3%)

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--GDREQ 265
           NP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  S +E     G R+Q
Sbjct: 1   NPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGGRQQ 60

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVVIEL+RG   +VILN
Sbjct: 61  IVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEVILN 120

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV RRT + L KAR+R H
Sbjct: 121 NLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGH 180

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID---------D 436
           +L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + ++++            D
Sbjct: 181 ILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPENLD 240

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             Y +  +G  +LS  Q +AILELRL RLTGL  + +  E   +  +I E + IL+S +R
Sbjct: 241 PQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATR 299

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+SH GY K  PL+V
Sbjct: 300 LMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQPLAV 358


>gi|157644498|gb|ABV58972.1| GyrA [Bacillus subtilis subsp. subtilis]
          Length = 300

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/289 (57%), Positives = 221/289 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M  +G+  +K Y K ARI GEV+GK HP G++A+Y++  RMAQD++   +L++G
Sbjct: 1   RRILYAMNDLGMTSDKPYKKSARIVGEVIGKSHPRGDSAVYESRVRMAQDFNYLYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFG VDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN
Sbjct: 61  HGNFGFVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPN 120

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LME+I GPDFPT   ILG
Sbjct: 121 LLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIPGPDFPTAGQILG 180

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 240

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
             I DLRDESDR G R+VIE++R A+A+VILN LY+ T+      V +V
Sbjct: 241 EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAHSGHSEVTIV 289


>gi|37624500|gb|AAQ96046.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 242

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 147/238 (61%), Positives = 185/238 (77%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K ARI G+V+G
Sbjct: 1   ELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL
Sbjct: 61  KYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL EV++GC+
Sbjct: 121 ADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
           A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + +E    
Sbjct: 181 AYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAEVEADEK 238


>gi|311033952|gb|ADP55402.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 285

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/285 (59%), Positives = 224/285 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 1   MNDLGMSSDKVYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 181 AYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           RDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 241 RDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 285


>gi|218658940|ref|ZP_03514870.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 223

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 169/222 (76%), Positives = 200/222 (90%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TG
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETG 223


>gi|71031392|ref|XP_765338.1| DNA gyrase subunit A [Theileria parva strain Muguga]
 gi|68352294|gb|EAN33055.1| DNA gyrase subunit A, putative [Theileria parva]
          Length = 1014

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 229/963 (23%), Positives = 422/963 (43%), Gaps = 162/963 (16%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + E++ +  + + D M +S+L YA+++ILGRA+PD RDGLK VHRRI++ M  + ++ N 
Sbjct: 93  DSEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNG 152

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y KCA++ G+V+G YHPH + ++YDAL R++QD+ +++ LI+G GNFGS + DPPAA R
Sbjct: 153 QYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAAMR 211

Query: 130 YTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTECRL   +  ++ +D+  +T+D+ PN+D +  EP+VL  R PN+L+NG  GIAVG+AT
Sbjct: 212 YTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLAT 271

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLD---------------------ALMEIIRGPDFPT 227
           NIP HN  EV++  +  I +                            ++  + GPDFPT
Sbjct: 272 NIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPT 331

Query: 228 GAVILG-RTGIKNAYATGRGSI-----------------VIRGVSHIEKTSGDREQIVVT 269
           G VI   R  ++  Y +G+G++                 V      I+     R  IV+ 
Sbjct: 332 GGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVIN 391

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA----DVILN 325
           +IPY      ++E I   ++   I+ + D++DESDR G R+V+ELKR  S+      I+ 
Sbjct: 392 QIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMA 451

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +L R T  +  +  N + L+  KP RF L  ILK ++ FR +V+ R+ K+LL K +    
Sbjct: 452 KLQRLT--EYNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLD 509

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           ++    I   N++ ++   +     +   + L +                          
Sbjct: 510 IINAYIIIYLNINTIINSFQNHQ--KGVYKVLKEE------------------------- 542

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L++ Q ++++ L L +L  L  D+++ +      +I+   ++L++ + L   I  +L
Sbjct: 543 -FKLNDDQMKSVMRLTLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNEIISDL 601

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             +KD     +R  ++    +  + +  V                              G
Sbjct: 602 TELKDHFKNIKRNTLIIYTDEGSNFETTVE-----------------------------G 632

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G     ED V    +V +  +++ ++SLG + K K+ +    S + +   + N +  +
Sbjct: 633 VEGPEGTSEDKVDPS-VVESDDNIIIYNSLGRISKIKLDQKFYKSNKNKSIRISNPIHSH 691

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI- 684
                T+I                          +   D  + NR+ K   K+D    + 
Sbjct: 692 STTPDTSI-------------------------ESSTPDSNKNNRAKKGETKIDEAAALE 726

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKG-DQVISMAIVL 742
           +   +    N I++  K G+ +    S +++   G +     GI   +  + + S+   L
Sbjct: 727 VGYCSNNNSNKIIIILKNGRIMHVNSSKLKLCKKGYDMFKYLGIKNDEMIEYITSIGKHL 786

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                       M   +  R  +     ++    N  + E             +  F+  
Sbjct: 787 GDIIMVGYGNGIMTICNTNRLNLKLSKTKLNLKLNLKNKEIKFFFNYNLNHISQNPFLFI 846

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            +++G+  + S           K ++   + K +E   +V+    ND   I++++ KG  
Sbjct: 847 CTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDE---VVSSCLANDQQHILILTSKGKH 903

Query: 863 IR----------VPVNEIRIAS---------RATK-------GVVIFSTAKDERVVSVER 896
            R          + +N+I++           R ++       G    +  +     +V++
Sbjct: 904 QRHNLYVGKYKLININDIKLQKIKGKGYNILRNSQKSIKKSGGDNSSNLDEAVSCTNVDK 963

Query: 897 IRE 899
           I+E
Sbjct: 964 IKE 966


>gi|37624512|gb|AAQ96052.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624514|gb|AAQ96053.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624516|gb|AAQ96054.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624518|gb|AAQ96055.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624520|gb|AAQ96056.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624522|gb|AAQ96057.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 246

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 142/242 (58%), Positives = 187/242 (77%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  
Sbjct: 181 NGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 240

Query: 260 SG 261
           + 
Sbjct: 241 AK 242


>gi|37624502|gb|AAQ96047.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624504|gb|AAQ96048.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624506|gb|AAQ96049.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624508|gb|AAQ96050.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624510|gb|AAQ96051.1| DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 246

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 142/242 (58%), Positives = 187/242 (77%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +GC+A ++N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  
Sbjct: 181 NGCLAYVENEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEAD 240

Query: 260 SG 261
           + 
Sbjct: 241 AK 242


>gi|37624462|gb|AAQ96027.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624464|gb|AAQ96028.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624466|gb|AAQ96029.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624468|gb|AAQ96030.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624470|gb|AAQ96031.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 246

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 144/242 (59%), Positives = 187/242 (77%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEAD 240

Query: 260 SG 261
           + 
Sbjct: 241 AK 242


>gi|312977113|ref|ZP_07788862.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
 gi|310896441|gb|EFQ45506.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
          Length = 415

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 133/408 (32%), Positives = 213/408 (52%), Gaps = 9/408 (2%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L + Q++AIL++RL RLTGL RD +  E   L  +I +  DILS   R+  II  ELL
Sbjct: 5   FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELL 64

Query: 507 SVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            ++      RRT I    ++ +EDED I ++++++TV+H GY+KR+P+  ++ Q RGGKG
Sbjct: 65  DIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKG 124

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G+ ++D DF+  L   STH  +LFF++ G VY +K + +P     A+G  ++N+L L 
Sbjct: 125 IKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLLQLE 184

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +GE++ T++  PE     ++ Y+ F TK G V+R  +S+F  I  SG IA+ L   DE+ 
Sbjct: 185 KGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELS 241

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +V T   + +IL+ T LG  V F    +R    R + GVRGI+L + D V+   I+   D
Sbjct: 242 NVLTTDGKQNILIGTHLGYAVTFNEGDVRAMG-RTAAGVRGINLREHDYVVGSGILGADD 300

Query: 746 ADY-DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                    Y K   A    + G   +     N +   G ++      +      ++ ++
Sbjct: 301 QVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVT---IINSNNDVMVIT 357

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             G   R    D   + RS  G+R   VS  +++ +L  V    + DQ
Sbjct: 358 TDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQDQ 405


>gi|37624482|gb|AAQ96037.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624484|gb|AAQ96038.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624486|gb|AAQ96039.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624488|gb|AAQ96040.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624490|gb|AAQ96041.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624492|gb|AAQ96042.1| DNA gyrase subunit A [Escherichia coli]
          Length = 246

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 143/242 (59%), Positives = 188/242 (77%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E  
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVD 240

Query: 260 SG 261
           + 
Sbjct: 241 AK 242


>gi|115456153|ref|NP_001051677.1| Os03g0812000 [Oryza sativa Japonica Group]
 gi|113550148|dbj|BAF13591.1| Os03g0812000 [Oryza sativa Japonica Group]
          Length = 438

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 225/474 (47%), Gaps = 64/474 (13%)

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           +L++ L +LT L R    +E  SL  EI +  ++LS++  +  +I QE   +K++  TPR
Sbjct: 1   LLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPR 60

Query: 517 RTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R+ I +    +++D D I  E+M++ +S  GYVKR+  + +  Q RG  G+S   MR  D
Sbjct: 61  RSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMND 120

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             +D  +  TH  VL+FS  G VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P
Sbjct: 121 NTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVP 180

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
             E      + Y+V  T +G +++  L+ F  I  SG I+++L   DE+  V  C  ++ 
Sbjct: 181 VNE---FGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDL 237

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           + L ++ G  +    + +R    R + GV  + L +GD++ SM I+              
Sbjct: 238 VALASQNGMVIVNTCNKLRALG-RKTRGVLAMKLKEGDKMASMDII-------------- 282

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                   +   N+ E   +   L   ++L +++ G GKR    
Sbjct: 283 -----------------------PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLN 319

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPV 867
            FR  N +  G++   +       +L AVF V          ++Q++LVS  GT+ R+ V
Sbjct: 320 AFRQGNFNRVGLQGYKLPPD---CSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKV 376

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERI-----------RESEIVDEAESTE 910
            +I I SR+ +GV++       ++ S   I             + ++ EAE  E
Sbjct: 377 KDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLISEAEEPE 430



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 103/278 (37%), Gaps = 33/278 (11%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T IV         +    +  +V ++  GY+K+VPL+ + A R    G   + + 
Sbjct: 171 DGERITSIVP-------VNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTS--GIISIQLA 221

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +  +        V   S  G V      +L     + RG   +  + L +G+++ +
Sbjct: 222 PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRG---VLAMKLKEGDKMAS 278

Query: 633 IMPFPEDESSWNNLY----------VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDS 680
           +   P    +    Y          ++F   +G  +R  L+ F     NR G    KL  
Sbjct: 279 MDIIPATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPP 338

Query: 681 RDEILSVETC--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + +V             +  ++L ++ G   R  +  I + + R++ GV  + L   
Sbjct: 339 DCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRS-RSARGVILMRLEHA 397

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++ S +++  A+ + ++       +S        D E
Sbjct: 398 GKIQSASLISAAEEEEEQDPESASLISEAEEPEKQDPE 435


>gi|37624472|gb|AAQ96032.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624474|gb|AAQ96033.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624476|gb|AAQ96034.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624478|gb|AAQ96035.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624480|gb|AAQ96036.1| DNA gyrase subunit A [Enterobacter cloacae]
          Length = 246

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 142/242 (58%), Positives = 188/242 (77%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +GC+A I++ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + +E  
Sbjct: 181 NGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAEVEAD 240

Query: 260 SG 261
           + 
Sbjct: 241 AK 242


>gi|237743166|ref|ZP_04573647.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433462|gb|EEO43674.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 379

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 136/436 (31%), Positives = 229/436 (52%), Gaps = 60/436 (13%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + I  E   +   IKE  ++L   +++  I+K+ELL +K++    RRT+I E  +++  E
Sbjct: 1   EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E++++T ++ GYVKR+  S Y+AQRRGGKG S +   ++D+   +   ST  +++
Sbjct: 61  DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+  G VY  + + +P  S Q+RG+ L NI++L++GE++   +   E         VVF
Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKE---VVF 177

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRF 708
            TK+G +++  L +F  IN SG IA+K    D+I+ V      N   IL+ T  G C RF
Sbjct: 178 ITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRF 237

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               IR   GR++ GV+ I+L KGD V+S  ++ + + D                     
Sbjct: 238 LTDTIRA-TGRSTQGVKAITLRKGDMVVSAMLIKNPETD--------------------- 275

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          ILT++E G+GKRTS  ++   NR GKG+ 
Sbjct: 276 -------------------------------ILTITENGYGKRTSLDEYPQYNRGGKGVI 304

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              V++ N  G +V+V  V+++++++ ++  G +IR  +NEI    RAT+GV I   A D
Sbjct: 305 NLKVNEKN--GKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIMKVADD 362

Query: 889 ERVVSVERIRESEIVD 904
           E+V ++ +I++ E ++
Sbjct: 363 EKVAAITKIKKEEDLE 378


>gi|221061465|ref|XP_002262302.1| dna gyrase a-subunit [Plasmodium knowlesi strain H]
 gi|193811452|emb|CAQ42180.1| dna gyrase a-subunit, putative [Plasmodium knowlesi strain H]
          Length = 1173

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 202/924 (21%), Positives = 399/924 (43%), Gaps = 100/924 (10%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
             V I D +  ++L+YA  +IL R + D RDGLK V RRI++ M ++     K  Y KCAR
Sbjct: 175  DVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKKCAR 234

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
            I GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+ +  AA RYTE ++ 
Sbjct: 235  IVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEAKVS 293

Query: 137  KAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
               + +L D++  + +++  N+DG+  EP VLC++ P +L+NG  GIAV + +NIP HNL
Sbjct: 294  NFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPCHNL 353

Query: 196  GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVS 254
             +V++  ++ + + +I  D L  II+GPDF TG +I+ +   ++N Y TG+G+I IR   
Sbjct: 354  VDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIRSNV 413

Query: 255  HIEKTSGDR----------------------EQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E T  D+                      +++V+  +P  V    ++E +  ++ EK+
Sbjct: 414  FLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILNEKK 473

Query: 293  IV---DIADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVAL-N 345
                  +  +RDES+++  R+V+EL++ +  + I   ++ +++YT +Q  +  N V + +
Sbjct: 474  NEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVCIGH 533

Query: 346  GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                 +F+L   L+ +   R   + +         +   H++    +    + E++  ++
Sbjct: 534  QNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIISFLQ 593

Query: 406  FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
             + N E  +    +                             L++ Q   IL +++ +L
Sbjct: 594  KNQNIEEIKNFFKEN--------------------------FKLNDYQIHHILSMKIQKL 627

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   D       +   +++  D++S+  ++  +I  +L  +K++        I     
Sbjct: 628  VNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRLIIDQLTYIKNKYG------INSVGR 681

Query: 526  DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIV 583
                +    R   +       + K   L++  A+R G  G G     ++ E  ++     
Sbjct: 682  FAPPQSVKYRYVYINPPERNHHFKEHSLALVNAERDGPSGYGGDAEDLKGERKISK---- 737

Query: 584  STHTSVLFFSSLGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESS 642
                ++          +  V    +      RG   I+  +  +   I +I         
Sbjct: 738  --KDTLSDEIRNQEEQQTPVEDPALPKARNLRGVKKIDPTTQYRQTYIDSI-HTDVKNVY 794

Query: 643  WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
             N+  +V  T  G V++ K+++ ++ +++  I        ++ +V+   +EN+       
Sbjct: 795  NNDYVLVLITYGGYVKKIKVAEKLKNHQNNII--------KLSNVKYILKENEEKKLKDG 846

Query: 703  G-----QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            G       V              S  +  I+  K    +  +I+              K 
Sbjct: 847  GAPVEAANVVESGEEGANSMSAKSSSLNAINCYK----VKKSILCRNKDKLLLTDSQNKA 902

Query: 758  MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                   +   + +      +  +  + +     + +  +++++  SE G  K  ++  F
Sbjct: 903  YILNVYDLQTSSYDSKGTPINQVIHCSKNITGMTKFEENKKYLIVCSENGKMKVINNDVF 962

Query: 818  RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                +  KGIR     K       +     N +D  I+ +  G +I+ P+   +I+ + +
Sbjct: 963  LKKKK--KGIRLFKNKKD------IHFSYCNFSDNCIVGTASGHIIQFPLANFKISKKNS 1014

Query: 878  KGVVIFSTAKDERVVSVERIRESE 901
             G    +  K+++VV +      E
Sbjct: 1015 LGNKCINLGKNDKVVDLLAYDNDE 1038



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 95/759 (12%), Positives = 256/759 (33%), Gaps = 135/759 (17%)

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-------------GRTGI 237
            P     E+++  + +++    + + +++ IR         I+                  
Sbjct: 454  PNVKPNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSF 513

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-----R 292
               Y   + +     V           Q  +     Q+     +  I + +  K     +
Sbjct: 514  IFKYTQMQITYHCNFVC--IGHQNSYTQFSLKSF-LQLWCENRINFIKKNLTIKNQNLQK 570

Query: 293  IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             + I DL     ++   ++  L++  + + I N       L      +++++   K    
Sbjct: 571  ELHIIDLYILIQKKILEIISFLQKNQNIEEIKNFFKENFKLNDYQIHHILSMKIQKLVNI 630

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
              +            +   R   L++       +++     + N   +  + RF+P P++
Sbjct: 631  KNVDFCTHKEQILARMEQNRD--LISNVDKIKRLIIDQLTYIKNKYGINSVGRFAP-PQS 687

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             +   +  +    +       +   +                  +      +++    D 
Sbjct: 688  VKYRYVYINPPERNHHFKEHSLALVNAERDGPSGYGGD---AEDLKGE--RKISKK--DT 740

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
            + +E+ +   +     D    ++R L  +K+   + +      R+T I    +  + ++ 
Sbjct: 741  LSDEIRNQEEQQTPVEDPALPKARNLRGVKKIDPTTQY-----RQTYI--DSIHTDVKNV 793

Query: 533  IVREDMVVTVSHLGYVKRVPLSVYRAQRR------------------------------- 561
               + ++V +++ GYVK++ ++      +                               
Sbjct: 794  YNNDYVLVLITYGGYVKKIKVAEKLKNHQNNIIKLSNVKYILKENEEKKLKDGGAPVEAA 853

Query: 562  -----GGKGRSGVVMRDE-------DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                 G +G + +  +           V    +      +L   S    Y   V+ L   
Sbjct: 854  NVVESGEEGANSMSAKSSSLNAINCYKVKKSILCRNKDKLLLTDSQNKAYILNVYDLQTS 913

Query: 610  SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            S  ++G  +  ++  ++   IT +  F E     N  Y++  +++G ++      F++  
Sbjct: 914  SYDSKGTPINQVIHCSKN--ITGMTKFEE-----NKKYLIVCSENGKMKVINNDVFLKKK 966

Query: 670  RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            + G    K       +    C   ++ ++ T  G  ++FP++  ++ + +NS+G + I+L
Sbjct: 967  KKGIRLFKNKKD---IHFSYCNFSDNCIVGTASGHIIQFPLANFKI-SKKNSLGNKCINL 1022

Query: 730  AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-------------TSLK 776
             K D+V+ +    + + +               ++I+ +  ++                K
Sbjct: 1023 GKNDKVVDLLAYDNDEKNVGNFQIIFLSKGGHGKMINLEELKVQKKKGKGYKIMKFKRAK 1082

Query: 777  NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             D+ ++G +++E  +E K  E+++             + +F        G +  D++K N
Sbjct: 1083 RDAVLQGEVAKEEDKENKNHEKYVK-----------DADEF-------LGFKLYDMTKKN 1124

Query: 837  EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
                        DND +I+++D   LIR  +  ++  +R
Sbjct: 1125 ------------DNDFLIMITDHAILIRKNITLLKKKNR 1151


>gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 303

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 144/291 (49%), Positives = 197/291 (67%), Gaps = 1/291 (0%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M +MG+     + KCA+I GE
Sbjct: 1   LKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGE 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++DGD PAA RYTE ++   + 
Sbjct: 61  VMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSE 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  GIAVGMAT+IP+HN  E+ D
Sbjct: 121 LLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
             + +I +PD  ++ L+E I GPDFPTG  +I  R  I  +Y TGRG   +R     E  
Sbjct: 181 AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDL 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+RDES      +
Sbjct: 241 GRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRCL 291


>gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 399

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 173/424 (40%), Positives = 242/424 (57%), Gaps = 31/424 (7%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++DGD PAA
Sbjct: 5   DIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAA 64

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  GIAVGMA
Sbjct: 65  MRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMA 124

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  +Y TGRG
Sbjct: 125 TSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRG 184

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+RDES   
Sbjct: 185 GFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 244

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFR 365
              V++   R     +++  +++ T L+S F +NM  L  G  P+   L  +LK ++  R
Sbjct: 245 IRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHR 304

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+      M   W+  
Sbjct: 305 REVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPV----MMARWD-- 358

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L++ Q  AIL +RL  L  L   +IR E + L  E  
Sbjct: 359 -----------------------LTDNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKG 395

Query: 486 ECLD 489
           E   
Sbjct: 396 EIEA 399


>gi|159468217|ref|XP_001692279.1| hypothetical protein CHLREDRAFT_115934 [Chlamydomonas reinhardtii]
 gi|158278465|gb|EDP04229.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 315

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 161/314 (51%), Positives = 211/314 (67%), Gaps = 2/314 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y KCAR+ GEV+GK+HPHG+ A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152
           YD+L R+AQD+S+R+ L++G GNFGSVD DP AA RYTECRL  AA   LL DLG  TV+
Sbjct: 61  YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +R  +D S QEPVVL A  PN+LVNG  GIAVG+A+ IP HNLGEVV     +I NP++ 
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-IVIRGVSHIEKTSGDREQIVVTEI 271
            + LME +RGPD+PTG  ++    +  AY TGRGS    +     E   G  E IV+TE+
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPELLAAYRTGRGSAAAEKLAQAAETADGGPELIVITEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY V K  +        R      +AD+RDESDR G RVV+E+K G +A+++L QL++ T
Sbjct: 241 PYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFKDT 300

Query: 332 SLQSLFSVNMVALN 345
            LQ    V    L 
Sbjct: 301 RLQVCADVRWCGLQ 314


>gi|4007020|emb|CAA77112.1| topoisomerase IV [Campylobacter jejuni]
          Length = 366

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 11/367 (2%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPPAA--ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           L++GQGN+     DP +    RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L
Sbjct: 61  LVDGQGNWRRSPDDPKSFAAMRYTESRLSKYSELLLSELGRGTADWVPNFDGTLQEPKML 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT 227
            AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD L++I++GPD+PT
Sbjct: 121 PARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPRTTLDQLLDIVQGPDYPT 180

Query: 228 GA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            A +I  R  I+  Y  GRGS+ +R V   E        +V++ +P QV+ A +LE+IA 
Sbjct: 181 EAEIITSRAEIRKMYEKGRGSVRMRAVWKKEDG-----AVVISALPQQVSGARVLEQIAA 235

Query: 287 LVREKRIVDIADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            +R   +  + DLRDESD +     V++        D ++N L   T L+  + + +  +
Sbjct: 236 QMRNNNVPMVDDLRDESDHEKPTRLVIVPRSNRVDIDQVMNHLLATTELEKSYRIKLNMI 295

Query: 345 N-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
               +P    L+ IL  ++  R + V RR  Y L K   R H+L G  +   N++EV+ I
Sbjct: 296 GLDGRPAVKNLLEILSEWLVLRRDTVRRRLNYRLEKVLKRLHMLEGFLVEFLNIEEVIDI 355

Query: 404 IRFSPNP 410
           I     P
Sbjct: 356 IHNEDEP 362


>gi|194293775|gb|ACF39982.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293805|gb|ACF39997.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 229/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|222137880|gb|ACM45453.1| DNA gyrase subunit A [Aeromonas fluvialis]
          Length = 235

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 137/230 (59%), Positives = 180/230 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +D LM  I GPDFPTG +I GR+GI  AY TGRGS+ +R  + +E    
Sbjct: 181 TIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|194293783|gb|ACF39986.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 229/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|194293809|gb|ACF39999.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 229/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKLASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|194293785|gb|ACF39987.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293791|gb|ACF39990.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293797|gb|ACF39993.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293801|gb|ACF39995.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293815|gb|ACF40002.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 229/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|270160515|gb|ACZ63223.1| DNA gyrase subunit A [Aeromonas rivuli]
 gi|270160519|gb|ACZ63225.1| DNA gyrase subunit A [Aeromonas rivuli]
          Length = 235

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 136/230 (59%), Positives = 180/230 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R ++++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N  +
Sbjct: 121 DWVPNYDGTELIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +D LM  I GPDFPTGA+I GR+GI  AY TGRGS+ +R  + +E    
Sbjct: 181 TIDELMTYISGPDFPTGAIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEK 230


>gi|194293789|gb|ACF39989.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 167/306 (54%), Positives = 228/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+ VDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNPVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|194293813|gb|ACF40001.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 228/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFPKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|194293807|gb|ACF39998.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 228/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL    P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNPPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|194293795|gb|ACF39992.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293799|gb|ACF39994.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 167/306 (54%), Positives = 229/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VI+LKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIDLKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|317498961|ref|ZP_07957244.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893794|gb|EFV15993.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 323

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 142/320 (44%), Positives = 208/320 (65%), Gaps = 6/320 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M ++G+ +++ + K
Sbjct: 3   EHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY++L  M+QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RLQK      L DL K+ VDF  N+D + +EP VL  + PN+LVNG  GIAVGM T+IP 
Sbjct: 123 RLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD   A +    I  + LME I GPDFPTG +++ +  + N Y++G G + +RG
Sbjct: 183 HNLGEVVDAVKAYMRKESITNEELMEYIEGPDFPTGGLVINKKDLLNIYSSGTGKLKLRG 242

Query: 253 VSHIEKTS--GDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               E     G+++++V++EIPY +   N +  L     L+  K   DI D+ +ES + G
Sbjct: 243 KVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESSKDG 302

Query: 308 YRVVIELKRGASADVILNQL 327
            R+V+EL++GA  + +   L
Sbjct: 303 IRIVLELRKGADVERLKKSL 322


>gi|194293771|gb|ACF39980.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293773|gb|ACF39981.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293777|gb|ACF39983.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293779|gb|ACF39984.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293781|gb|ACF39985.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293787|gb|ACF39988.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293793|gb|ACF39991.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293803|gb|ACF39996.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293811|gb|ACF40000.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 168/306 (54%), Positives = 229/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|226201187|gb|ACO37586.1| DNA gyrase subunit A [Aeromonas taiwanensis]
          Length = 235

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 137/235 (58%), Positives = 181/235 (77%), Gaps = 1/235 (0%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + P +LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQ 265
            +D LM  + GPDFPTG +I GR+GI  AY TGRGSI +R  + +E      RE 
Sbjct: 181 TIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKAEVEVDEKSGRET 235


>gi|226201191|gb|ACO37588.1| DNA gyrase subunit A [Aeromonas sanarellii]
          Length = 235

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 136/235 (57%), Positives = 181/235 (77%), Gaps = 1/235 (0%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + P +LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQ 265
            +D LM  + GPDFPTG +I GR+GI  AY TGRGS+ +R  + +E      RE 
Sbjct: 181 TIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVEVDEKSGRET 235


>gi|237841329|ref|XP_002369962.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
 gi|211967626|gb|EEB02822.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
          Length = 1278

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 185/547 (33%), Positives = 294/547 (53%), Gaps = 59/547 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q+ +  +  + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +  R  LIEG GNFGS
Sbjct: 1   MQQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           VDGDPPAA RYTECRL +     L  +L    V FRPN+D + +EPVV  A  P VL+ G
Sbjct: 61  VDGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I 
Sbjct: 121 SSGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIP 180

Query: 239 NAYATGRGSIVIRGVSHIE---------------------------KTSGDRE---QIVV 268
            AY  GRG +++RG  H+E                                R+   ++V+
Sbjct: 181 GAYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNIRNGRKNERRLVI 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PY VNK+ +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L 
Sbjct: 241 TELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLL 300

Query: 329 RYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++T+LQ    ++++AL  G KP RF+L  +L +++AFR   + R       + + R+H+L
Sbjct: 301 KHTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLL 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL  AV+ +D+VV+ +R S + + A+++L +                           +
Sbjct: 361 EGLLRAVSLMDDVVQTVRESLSADEAKQKLTE-------------------------PPL 395

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             S  Q +A+L L L+RLT L R  +  E  +    + E   +L+    +  ++ +EL +
Sbjct: 396 GFSPAQAQALLRLTLSRLTRLERRQLEEEAKAQKNRLSELASLLAHDREIYELMVEELQA 455

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            K     PR+T+++   L    +     ED   T +            + ++R  G+ + 
Sbjct: 456 HKTRHKAPRKTKVL--GLRRAQQRARREEDARATTARNSQEAFAETDRHDSRRPDGREKE 513

Query: 568 GVVMRDE 574
              ++D+
Sbjct: 514 ENPVKDD 520



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 22/144 (15%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V              
Sbjct: 1009 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPE----------- 1057

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     +  D  +  S K   S E     E   E    E  +L V+  GFGKR    
Sbjct: 1058 ---------VKEDKAKTESRKEGDSDETQSKNESSNE--KAEPSLLIVTAAGFGKRIRVS 1106

Query: 816  DFRISNRSGKGIRATDVSKINEIG 839
              R+  R G G+R   + K  ++ 
Sbjct: 1107 ALRMQRRRGVGVRVIRLVKRKKVA 1130



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 96/561 (17%), Positives = 189/561 (33%), Gaps = 78/561 (13%)

Query: 407  SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
              + E  +     R    S+ + L +   +        G    +  Q +        R  
Sbjct: 527  KRDLERGKARTDARDEEGSEGQALEET--EGLGGFEEKGRDDRTSTQRKKFAGQDTWRKD 584

Query: 467  GL-GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
            G+  R     E       +   ++  S+ +      +       +E     R    E + 
Sbjct: 585  GIVDRQKRLKEEGETETLVSRDVNESSTEAETDASEEDREGDSSEEDQDDARVPFGE-IK 643

Query: 526  DMEDEDCIVREDMVVTVSHLGYVKRVPLSVY----------------------------- 556
            +M  ED I  +  VV +S    V+R+PLSVY                             
Sbjct: 644  NMNKEDFISNQRNVVLLSAPALVRRLPLSVYPTLRRGALGVRSLSRSLASAESPDLERDE 703

Query: 557  --RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
               AQ RG KG+S  V      +  ++   T   +LF S+ G+V     +R+P+GS  +R
Sbjct: 704  ADEAQTRGVKGKSAAVGASS--LQGVWSCWTKDRLLFLSANGYVSMLPAYRVPLGSRISR 761

Query: 615  GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK------------HGNVRRNKL 662
            G +L  +L     ++   +    E  ++   L    A +                +   +
Sbjct: 762  GTSLPQLL-FEGWKKPAALRRLGESAAAAGALAEDAANREKKREEKERTLLREAAQVAAV 820

Query: 663  SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   +  K      + +   S     +   +++ T  G+  +  +   R+   R   
Sbjct: 821  LAVPPPTQREKARGVRQASE---SSRKSRKAKFLVVVTDQGRIAKIKLK--RILGRRCET 875

Query: 723  GV-RGISLAKGDQVISMAIVLH-----ADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             V + +SL +GD + + A++       A          + H+       +   EE  + K
Sbjct: 876  KVKKLLSLVQGDSIRAAALLEEEVEPLARGRVSGAGKEINHLRGNGSECNATDEERGARK 935

Query: 777  NDSSVEGNISEERCQELKLKEQFILTVSEKGF------GKRTSSYDFRISNRSGKGIRAT 830
             D   E   + E+ +E + +E+      E+        G R    +  +     +G R  
Sbjct: 936  KDREEEDEETTEKEEEEEDEEEEEEEEEEEEEEEEEEAGSRLVEDEDDVGGEGAEGERTD 995

Query: 831  DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA-TKGVVIFSTAKDE 889
              S+              ++  I++V+ +G  +R P + +R +  + T+GV        +
Sbjct: 996  LKSEEKRD---------TNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGD 1046

Query: 890  RVVSVERIRESEIVDEAESTE 910
             V SV  +   E+ ++   TE
Sbjct: 1047 SVASVAVVP-PEVKEDKAKTE 1066



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 100/311 (32%), Gaps = 54/311 (17%)

Query: 641  SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILL 698
             S    ++V  T  G + + KL   +      K+   L     D I +     +E + L 
Sbjct: 844  KSRKAKFLVVVTDQGRIAKIKLKRILGRRCETKVKKLLSLVQGDSIRAAALLEEEVEPLA 903

Query: 699  ---TTKLGQ---CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
                +  G+    +R   S         +   RG    K  +          + + DE  
Sbjct: 904  RGRVSGAGKEINHLRGNGSEC-----NATDEERGAR-KKDREEEDEETTEKEEEEEDEEE 957

Query: 753  CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER----CQELKLKEQFILTVSEKGF 808
               +    +          +   ++D   EG   E       ++       I+ V+ +G 
Sbjct: 958  EEEEEEEEEEEEEEEAGSRLVEDEDDVGGEGAEGERTDLKSEEKRDTNSPSIVIVTRQGM 1017

Query: 809  GKRTSSYDFRISNR-SGKGIRATDVSKINEIGALVAVFP-VNDN------------DQ-- 852
            G R  +   R S     +G+RA  +   + + ++  V P V ++            D+  
Sbjct: 1018 GLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDKAKTESRKEGDSDETQ 1077

Query: 853  -------------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                         +++V+  G   R+ V+ +R+  R   GV +    K ++V        
Sbjct: 1078 SKNESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKRKKVA------- 1130

Query: 900  SEIVDEAESTE 910
             E  D   S E
Sbjct: 1131 REGDDRGLSDE 1141


>gi|289808119|ref|ZP_06538748.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 346

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 154/346 (44%), Positives = 215/346 (62%), Gaps = 9/346 (2%)

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVN 276
           E I         +I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVN
Sbjct: 1   EHIPVRTSRPPPIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVN 60

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 61  KARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVS 120

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LAIA+AN
Sbjct: 121 FGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALAN 180

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMY 448
           +D ++ +IR +P P  A+  L+ R W+  ++  +++   D +             DG  Y
Sbjct: 181 IDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYY 240

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++E+  +
Sbjct: 241 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELI 300

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +D+    RRT I     D+  ED I +E++VVT+SH GYVK  PL+
Sbjct: 301 RDQFGDERRTEITANSADINIEDLISQENVVVTLSHQGYVKYQPLT 346


>gi|284097496|ref|ZP_06385583.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830992|gb|EFC35015.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 250

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 146/236 (61%), Positives = 183/236 (77%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+  T V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM QMG+  N+ Y 
Sbjct: 4   EERFTQVAIEDEMRLSYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMNQMGLAHNRAYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+I GE+MG YHPHG++AIYDAL RMAQD+++R  L++GQGN+GSVDGDPPAA RYTE
Sbjct: 64  KSAKIVGEIMGNYHPHGDSAIYDALVRMAQDFNMRYTLVDGQGNYGSVDGDPPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF P YD S  EP+VL A+ PN+L+NG GGIAVG ATNIPT
Sbjct: 124 ARLTKLAGEMLADIDKETVDFGPTYDESDVEPLVLPAKLPNLLLNGAGGIAVGYATNIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNLGEVV   + V++NP   L  LM++I GPDFPT   I G  GI++AY  G G++
Sbjct: 184 HNLGEVVTALLYVLENPAATLPELMDMIPGPDFPTAGFIYGTQGIRDAYEHGAGAV 239


>gi|323255023|gb|EGA38813.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 311

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/341 (31%), Positives = 180/341 (52%), Gaps = 59/341 (17%)

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   
Sbjct: 2   AARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEAN 61

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           ERIT I+P  E E   N   V  AT  G V++  L++F +   +G IA+ L+  DE++ V
Sbjct: 62  ERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGV 118

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +  +  ++++L +  G+ VRF   A+R    R + GVRGI LA  D+V+S+         
Sbjct: 119 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGVRGIKLAGDDKVVSLI-------- 169

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                        +   E  ILTV++ G
Sbjct: 170 ---------------------------------------------IPRGEGAILTVTQNG 184

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT++ ++   +R+ +G+ +  V++ N  G++V    V+D DQI++++D GTL+R  V
Sbjct: 185 YGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRV 242

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +EI +  R T+GV++  TA+DE VV ++R+ E    +E ++
Sbjct: 243 SEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA 283



 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L+ +   R    G   V + D D +  + 
Sbjct: 62  ERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLNDGDELIGVD 119

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + S    V+ FS+ G V + K   +      A G   +  + L   +++ +++  P  E 
Sbjct: 120 LTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI-IPRGEG 175

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           +     ++  T++G  +R    ++   +R+  G I++K+      ++        + I++
Sbjct: 176 A-----ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMM 230

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            T  G  VR  +S I V   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 231 ITDAGTLVRTRVSEISVVG-RNTQGVILIRTAEDENVVGLQRVAEPVDDEE 280


>gi|257472186|gb|ACV53934.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472188|gb|ACV53935.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472190|gb|ACV53936.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472192|gb|ACV53937.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472196|gb|ACV53939.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472198|gb|ACV53940.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472210|gb|ACV53946.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472212|gb|ACV53947.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472214|gb|ACV53948.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472220|gb|ACV53951.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 161/259 (62%), Positives = 206/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+R A+A+V+
Sbjct: 241 RNGMRIVIELRRDANANVL 259


>gi|194293769|gb|ACF39979.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 167/306 (54%), Positives = 227/306 (74%), Gaps = 1/306 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL    P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNHPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINLQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRRSKTSEIAKN 299

Query: 416 ELMQRS 421
            L++R 
Sbjct: 300 TLIERF 305


>gi|257472216|gb|ACV53949.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472218|gb|ACV53950.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 160/259 (61%), Positives = 206/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+R A+A+V+
Sbjct: 241 RNGMRIVIELRRDANANVL 259


>gi|255570740|ref|XP_002526324.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534351|gb|EEF36060.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 433

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 129/448 (28%), Positives = 215/448 (47%), Gaps = 44/448 (9%)

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-D 526
           L R    NE   L  +I    ++LSSR  +L +I+QE + +K++  +PRR+ + +     
Sbjct: 3   LQRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASPRRSSLEDSDGSQ 62

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           ++D D +  E+M++  S  GYVKR+    +  Q RG  G+S   +R  D ++D  +   H
Sbjct: 63  LDDIDVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDSIVCRAH 122

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             VL+FS LG VY  + +++P  S  A G  L+ ILSL+ GERIT+I+P  E      + 
Sbjct: 123 DHVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSE---FSGDQ 179

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +++  T +G +++  L+ F  I  +G IA++L   DE+  V  CT  + + + +  G  +
Sbjct: 180 FLLMLTVNGYIKKVPLNLFSAIRSTGIIAIQLVPGDELKWVRCCTNNDLVAMASLNGMVI 239

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                 IR  + RN+ G   + L  GD++ SM I+  A     ER               
Sbjct: 240 LSSCENIRALS-RNTRGGVAMRLKGGDKMASMDIIPVAMRKDLER--------------- 283

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                             + E+     K    ++L VSE G+GKR     FR+S  +  G
Sbjct: 284 ------------------VLEDPRSNSKGSGPWLLFVSENGYGKRVPLSSFRLSPLNRVG 325

Query: 827 IRATDVSKINEIGA--LVAVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           +     S  +++ A  +V      D   ++Q++LVS  GT+ R+ V +I I SR  +GV+
Sbjct: 326 LIGYKFSAEDQLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVQDISIQSRFARGVI 385

Query: 882 IFSTAKDERVVSVERIRESEIVDEAEST 909
           +    +  ++ S   I   E  +  EST
Sbjct: 386 LMRLEQAGKIQSASLISTMEA-EPKEST 412



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 108/271 (39%), Gaps = 31/271 (11%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T I+              +  ++ ++  GY+K+VPL+++ A R    G   + + 
Sbjct: 162 DGERITSIIP-------VSEFSGDQFLLMLTVNGYIKKVPLNLFSAIRST--GIIAIQLV 212

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG-----------KALINI 621
             D +  +   + +  V   S  G V       +   S   RG            A ++I
Sbjct: 213 PGDELKWVRCCTNNDLVAMASLNGMVILSSCENIRALSRNTRGGVAMRLKGGDKMASMDI 272

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLD 679
           + +   + +  ++  P   S  +  +++F +++G  +R  LS F    +NR G I  K  
Sbjct: 273 IPVAMRKDLERVLEDPRSNSKGSGPWLLFVSENGYGKRVPLSSFRLSPLNRVGLIGYKFS 332

Query: 680 SRDEILSVETC--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           + D++ +V             +  ++L ++ G   R  +  I + + R + GV  + L +
Sbjct: 333 AEDQLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVQDISIQS-RFARGVILMRLEQ 391

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQR 762
             ++ S +++   +A+  E       M A  
Sbjct: 392 AGKIQSASLISTMEAEPKESTPNASEMLATE 422


>gi|37624530|gb|AAQ96061.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 215

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 137/215 (63%), Positives = 173/215 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EVV
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVV 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           +GC+A ID+ +I ++ LME I GPDFPT A+I GR
Sbjct: 181 NGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGR 215


>gi|258611761|ref|ZP_05711629.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
 gi|258605976|gb|EEW18584.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
          Length = 504

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 138/591 (23%), Positives = 264/591 (44%), Gaps = 92/591 (15%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           +N L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R
Sbjct: 1   MNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARAR 60

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            H+L GL  A++ LDEV+++IR S +   A+  L  +                       
Sbjct: 61  QHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------------------- 97

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 SE Q  AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K+
Sbjct: 98  ---YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKE 154

Query: 504 ELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
           EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+  GYVKR     Y A   
Sbjct: 155 ELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNG 214

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
                  + M++ D    +  +++  S+L F+S G      V  LP    +  G  + ++
Sbjct: 215 A-----ELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHL 269

Query: 622 LS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLD 679
            S L+ GE I + +     ++       +F TK+G  +++ ++++         +A+KL 
Sbjct: 270 ASDLSAGEEIRSAIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLK 326

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I+L + D VI   
Sbjct: 327 GDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAINLKQDDIVIGGI 385

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +++  +                                                   ++ 
Sbjct: 386 VLMPNE---------------------------------------------------QKH 394

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  +++G  K+  + +F   +R+ +G+      K N     + +   ++ND + + ++ 
Sbjct: 395 ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNT 453

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++ + V  +RI  R + G  +     +    S+  +   EI D +++ +
Sbjct: 454 DQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSDAKD 503


>gi|257472156|gb|ACV53919.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 159/259 (61%), Positives = 204/259 (78%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G RVVIEL R A+A VI
Sbjct: 241 RNGMRVVIELGRDANAHVI 259


>gi|313799068|gb|ADR82153.1| topoisomerase IV subunit A [Mycoplasma sp. 1220]
          Length = 511

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 151/530 (28%), Positives = 270/530 (50%), Gaps = 39/530 (7%)

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           +L K+ V+F PN+D S  EP VL + +PN+L+NG  GIA+GMAT +P HN  E++D  +A
Sbjct: 7   ELKKNPVNFVPNFDDSELEPAVLPSIFPNLLINGTTGIAIGMATEMPPHNFEEIIDATIA 66

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR---GSIVIRGVSHIEKTSG 261
            + NP++    L  I++GPDFPTG +I G  GI+ ++ TGR     I +     I   + 
Sbjct: 67  KLQNPNLSFSQLCSIVKGPDFPTGGIIYGTKGIEESFETGRTLKNKIQLFSKFVITSDNK 126

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           ++  I +TEIPY V K+ ++  I  L+ +  +  + +++D+SDR+G ++VI L++ A+  
Sbjct: 127 NKY-IEITEIPYGVVKSDLVYSIDVLISQNEMDGVLEIKDQSDREGIKIVITLEKDANEK 185

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
            I+  L+  T LQ  +S N + +    P+   L  ++ ++V    ++  +   Y + K +
Sbjct: 186 SIMRYLFSKTKLQINYSYNNMVIKNNSPQLLNLNNLITSYVEHISDIKTKTLTYDVEKHK 245

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
            R  +++G        DE++ +IR S   +            A  I+DL+++        
Sbjct: 246 LRLEIVLGFLKVTEITDEIIEVIRKSEGSK------------AGVIQDLMNI-------- 285

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                   ++ Q  AI ELRL +L+    ++ +NE + L  EI     +L  + +    +
Sbjct: 286 -----FGFTKNQATAIAELRLYKLSKTDYNEFKNEKDYLESEINYINSLLEDKDKFTFYL 340

Query: 502 KQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
              L  +++E  +PRRT+IV+     D +++D I  E + V +S  GY+KR+   V  + 
Sbjct: 341 INLLKELRNEFPSPRRTQIVDREYNFDYDEKDLIKEEIINVAISKFGYIKRLSQKVIESN 400

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
                  S  V++DED++T    V+T  + L F++ G      ++++     +  G  L 
Sbjct: 401 -----DFSTYVLKDEDYLTFYNQVNTMDTFLIFTNFGNYAIIPIYKIEECKWKDNGIHLS 455

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           + + L  G     ++   E     +NL+V  AT++G V+R  + DF    
Sbjct: 456 DFVDLQSG---EVVVSVIEVSDWNSNLFVTIATRNGIVKRTPIKDFEVSR 502


>gi|257472200|gb|ACV53941.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 161/259 (62%), Positives = 206/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R  L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NPDI L  L+EII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELVEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+RGA+A+V+
Sbjct: 241 RNGMRIVIELRRGANANVL 259


>gi|257472152|gb|ACV53917.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472158|gb|ACV53920.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472160|gb|ACV53921.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472164|gb|ACV53923.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472168|gb|ACV53925.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 159/259 (61%), Positives = 205/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G RVVIEL+R A+A VI
Sbjct: 241 RNGMRVVIELRRDANAHVI 259


>gi|257472222|gb|ACV53952.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 160/259 (61%), Positives = 205/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K  RI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSGRIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+R A+A+V+
Sbjct: 241 RNGMRIVIELRRDANANVL 259


>gi|199612847|gb|ACH91611.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 228

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 136/228 (59%), Positives = 177/228 (77%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSG 228


>gi|257472154|gb|ACV53918.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472162|gb|ACV53922.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472166|gb|ACV53924.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472178|gb|ACV53930.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472180|gb|ACV53931.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472182|gb|ACV53932.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472184|gb|ACV53933.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472194|gb|ACV53938.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472202|gb|ACV53942.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472204|gb|ACV53943.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472206|gb|ACV53944.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 157/259 (60%), Positives = 208/259 (80%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A+VI
Sbjct: 241 RTGMRIVIEIRRDANANVI 259


>gi|13810773|gb|AAK40031.1|AF272021_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 253

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 152/252 (60%), Positives = 200/252 (79%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 2   MNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 62  VDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ 
Sbjct: 122 AGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRK 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 182 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 241

Query: 300 RDESDRQGYRVV 311
           RDESDR G R+V
Sbjct: 242 RDESDRTGMRIV 253


>gi|139439850|ref|ZP_01773215.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
 gi|133774778|gb|EBA38598.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
          Length = 339

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 194/373 (52%), Gaps = 59/373 (15%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT++H GYVKR+P++ YRAQ+RGGKG SGV ++++D + ++FI STH  VLFFSS G 
Sbjct: 1   MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ KV  LP+G+ QARG A++N+L   +GE+I +++   E      N Y++FATK G V
Sbjct: 61  VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCRE---FPANEYLMFATKSGMV 117

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +S + +  R G IA+ L   D +L+V    + + I+L T  G+ + F    +R   
Sbjct: 118 KKTVMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRA-T 176

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRGI +  G  V+ M +                                     
Sbjct: 177 GRDTSGVRGIGMKDGVSVLGMEVTNGNGD------------------------------- 205

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +  ++E+G+GKRT   D+   NR G+G+    +++   
Sbjct: 206 ----------------------LFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTER-- 241

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G L A+  V    ++ +V++  T+IRV  +EI    RAT+GV + +   ++R+ +V R+
Sbjct: 242 KGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVARM 301

Query: 898 RESEIVDEAESTE 910
             ++   E E  E
Sbjct: 302 TAAKEKPEGEGAE 314



 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 102/261 (39%), Gaps = 15/261 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +         + ++  +  G VK+  +S Y   RR   G   + +RD+D + ++ 
Sbjct: 91  EKIASVISCREFPANEYLMFATKSGMVKKTVMSAYDRSRR--DGLIAINLRDDDALLNVR 148

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            V     ++  ++ G        ++        G   +  + +  G  +  +      E 
Sbjct: 149 RVREGDKIILATTAGKAIMFSEEQVRATGRDTSG---VRGIGMKDGVSVLGM------EV 199

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILL 698
           +  N  +   T+ G  +R  ++D+ + NR G+    +   +    + +++T   ++++ +
Sbjct: 200 TNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTERKGNLAAMKTVGPQHELFI 259

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T+    +R     I    GR + GV+ +++   D++ ++A +  A    +         
Sbjct: 260 VTEGATVIRVKTDEISQ-TGRATQGVKMMTVDDNDRICAVARMTAAKEKPEGEGAEAAAD 318

Query: 759 SAQRRLISGDTEEITSLKNDS 779
           + +  +  GD  ++     D 
Sbjct: 319 TEETPVDLGDGNDMPEDLLDE 339


>gi|257472170|gb|ACV53926.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 156/259 (60%), Positives = 204/259 (78%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A VI
Sbjct: 241 RNGMRIVIEIRRDANAHVI 259


>gi|257472176|gb|ACV53929.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 156/259 (60%), Positives = 207/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +  Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDHPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A+VI
Sbjct: 241 RTGMRIVIEIRRDANANVI 259


>gi|257472208|gb|ACV53945.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 155/259 (59%), Positives = 207/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++   K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDQPNKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A+VI
Sbjct: 241 RTGMRIVIEIRRDANANVI 259


>gi|257472172|gb|ACV53927.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472174|gb|ACV53928.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 156/259 (60%), Positives = 205/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A VI
Sbjct: 241 RNGMRIVIEIRRDANAHVI 259


>gi|119444329|gb|ABL75407.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 152/250 (60%), Positives = 199/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G ++VIE
Sbjct: 241 DRTGMKIVIE 250


>gi|119444335|gb|ABL75410.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 153/250 (61%), Positives = 199/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|119444309|gb|ABL75397.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444311|gb|ABL75398.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444313|gb|ABL75399.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444317|gb|ABL75401.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444323|gb|ABL75404.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444331|gb|ABL75408.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444333|gb|ABL75409.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444337|gb|ABL75411.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|119444339|gb|ABL75412.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 153/250 (61%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|13810783|gb|AAK40036.1|AF272026_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 247

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 149/246 (60%), Positives = 194/246 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 2   MNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG 
Sbjct: 62  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGA 121

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 122 AGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRK 181

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 182 AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDL 241

Query: 300 RDESDR 305
           RDESDR
Sbjct: 242 RDESDR 247


>gi|119444327|gb|ABL75406.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 153/250 (61%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|46204725|ref|ZP_00049578.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/247 (53%), Positives = 168/247 (68%), Gaps = 1/247 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  V +  EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+  ++ 
Sbjct: 14  EVNEKIVDVDVQAEMETSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMADMGLRPDRA 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ GEVMGK HPHG+AAIYDAL R++QD+SLRL L++G GNFG++D D PAA RY
Sbjct: 74  HVKSARVVGEVMGKLHPHGDAAIYDALVRLSQDFSLRLPLVDGHGNFGTLD-DGPAASRY 132

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  +   L +D VDF PNYD   Q+P VL A  PN+LVNG  GIAVGMATN+
Sbjct: 133 TEARLAPPSLAMTAGLDEDVVDFVPNYDNKLQQPEVLPAAIPNLLVNGASGIAVGMATNM 192

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL EVV     ++ +PD DL+ALM  + GPD PTG  I+G  G+++AY TGRG    
Sbjct: 193 APHNLVEVVAAARHLVAHPDADLEALMRFVPGPDLPTGGKIVGLDGVRDAYRTGRGRSAR 252

Query: 251 RGVSHIE 257
              +  E
Sbjct: 253 APRTRTE 259


>gi|61657493|emb|CAI44405.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga sp. KOL6]
          Length = 652

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 129/422 (30%), Positives = 210/422 (49%), Gaps = 62/422 (14%)

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I E  +IL    ++  I+K+E   +K+    PRRT+I +  L  + E+ I  ED+
Sbjct: 291 KLVKKISEVKEILEKDVKVKEIMKKEFKYLKERYGDPRRTKITDEELRYDMEELIAEEDI 350

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T+SH GY+K  PLS YR+QRRGGKG +   + ++D V  + +    +S LF ++LG  
Sbjct: 351 VITLSHKGYLKSTPLSSYRSQRRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKA 410

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  K +++       RG+ +   L+L + E++  + P            +V  TKHG ++
Sbjct: 411 YVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLN-----GKGKDLVIVTKHGKIK 465

Query: 659 RNKLSDFIQINRS-GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVF 716
           R  L +F     + G  A+++++ DEI+S      E   +++ TKLG  +RFP+S +R  
Sbjct: 466 RTALEEFENATSNRGVRAIRIEAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRM 525

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             RN+ GV+ I L   D+V+SM +V                                   
Sbjct: 526 G-RNAAGVQAIKLQPDDEVVSMDVVPSE-------------------------------- 552

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               E  ILTV+EKGFGKRT    +RI  R G G+R  ++S + 
Sbjct: 553 -------------------NEGEILTVTEKGFGKRTPVELYRIQKRGGTGLR--NISDVK 591

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G +VAV  V  +++I++V+  G +IR+PV++I I  R TKGV +     D+ +  V  
Sbjct: 592 KTGYVVAVRYVRGDEEIVVVTKNGMMIRIPVSDIGIIGRITKGVKLIELG-DDSISKVAV 650

Query: 897 IR 898
           ++
Sbjct: 651 VK 652



 Score = 91.5 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 9/226 (3%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           E   +E+ ++  +  G     P+S+ R    R   G+    L++ D+V  + +  +  + 
Sbjct: 343 ELIAEEDIVITLSHKGYLKSTPLSSYRS-QRRGGKGITVSKLSEDDEVEFVVVTKNISST 401

Query: 748 YDERICYMKH-MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                    + +   +   +G       +    ++E          L  K + ++ V++ 
Sbjct: 402 LFITNLGKAYVLKNYQIETTGRNTRGRHISAFLNLEETEKVVALAPLNGKGKDLVIVTKH 461

Query: 807 GFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           G  KRT+  +F    SNR    +RA  +   +EI  + A    ++   +++ +  G +IR
Sbjct: 462 GKIKRTALEEFENATSNRG---VRAIRIEAGDEI--ISARVIDSERGSLVVATKLGMVIR 516

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            PV+++R   R   GV       D+ VVS++ +      +    TE
Sbjct: 517 FPVSDVRRMGRNAAGVQAIKLQPDDEVVSMDVVPSENEGEILTVTE 562


>gi|119444319|gb|ABL75402.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 153/250 (61%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPD+ +  LME+I GPDFPT   ILGR+GI+ AY T
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDMTISELMEVIPGPDFPTAGQILGRSGIRKAYET 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|213619192|ref|ZP_03373018.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 318

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 59/377 (15%)

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           + S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK 
Sbjct: 1   MGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKY 60

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 61  QPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 120

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F +   
Sbjct: 121 RGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPRS 177

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GVRGI LA
Sbjct: 178 AGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGVRGIKLA 236

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+S+ I                          G+   +T  +N         E   
Sbjct: 237 GDDKVVSLIIPR------------------------GEGAILTVTQNGYGKRTAADEYPT 272

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +    +    + V+E                                 G++V    V+D 
Sbjct: 273 KSRATQGVISIKVTE-------------------------------RNGSVVGAVQVDDC 301

Query: 851 DQIILVSDKGTLIRVPV 867
           DQI++++D GTL+R  V
Sbjct: 302 DQIMMITDAGTLVRTRV 318



 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 15/230 (6%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+   A   D   E    +  +QE+ ++  +  G     P++       R   G     
Sbjct: 26  RRTEITANSADINIE----DLISQEDVVVTLSHQGYVKYQPLTDYEA-QRRGGKGKSAAR 80

Query: 729 LAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + D +  + +    D         R+ +MK               I +L    + E  
Sbjct: 81  IKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 140

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +    +E   +   +   +  G  K+T+  +F     +G  I A +++  +E   L+ V
Sbjct: 141 TAILPVRE-YEEGVNVFMATASGTVKKTALTEFSRPRSAG--IIAVNLNDGDE---LIGV 194

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 195 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 244



 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 95/258 (36%), Gaps = 8/258 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   L+D+    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 49  VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 108

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
               +  +   A R + G   ++L   +    +  +L      +    +M   S   +  
Sbjct: 109 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKT 167

Query: 766 SGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           +             +V  N  +E    +L      ++  S  G   R      R   R+ 
Sbjct: 168 ALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTA 227

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+R   ++  ++   +V++        I+ V+  G   R   +E    SRAT+GV+   
Sbjct: 228 TGVRGIKLAGDDK---VVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK 284

Query: 885 -TAKDERVVSVERIRESE 901
            T ++  VV   ++ + +
Sbjct: 285 VTERNGSVVGAVQVDDCD 302



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 28  TEITANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFI 87

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
             L+     N +D I+  S +G L  + V ++  ASR  +G   V +     +ER+ ++ 
Sbjct: 88  DRLLVA---NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAIL 144

Query: 896 RIRESEI 902
            +RE E 
Sbjct: 145 PVREYEE 151


>gi|254993570|ref|ZP_05275760.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 281

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 137/277 (49%), Positives = 192/277 (69%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R
Sbjct: 184 PHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             + IE   G R+QI + EIPY+VNKA +++++ EL 
Sbjct: 244 SKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELR 280


>gi|119444321|gb|ABL75403.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 154/250 (61%), Positives = 199/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITISELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + I++TS  +E+IVVTEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIDQTSSGKERIVVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+VIE
Sbjct: 241 DRTGMRIVIE 250


>gi|119444325|gb|ABL75405.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 152/250 (60%), Positives = 200/250 (80%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYEKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G R+V+E
Sbjct: 241 DRTGMRIVVE 250


>gi|313192119|emb|CBX19919.1| gyrase A [Clostridium perfringens]
          Length = 289

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 158/290 (54%), Positives = 217/290 (74%), Gaps = 1/290 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+
Sbjct: 240 QKDVITRRTRFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAK 289


>gi|119444315|gb|ABL75400.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 150/250 (60%), Positives = 198/250 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR SI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRSSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVIE 313
           DR G ++V E
Sbjct: 241 DRTGIKIVFE 250


>gi|19569753|gb|AAL92168.1| GyrA protein [Bacillus amyloliquefaciens]
          Length = 244

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 147/244 (60%), Positives = 192/244 (78%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSV
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAA 120

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ A
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKA 180

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 181 YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLR 240

Query: 301 DESD 304
           DESD
Sbjct: 241 DESD 244


>gi|156103257|ref|XP_001617321.1| DNA GyrAse a-subunit [Plasmodium vivax SaI-1]
 gi|148806195|gb|EDL47594.1| DNA GyrAse a-subunit, putative [Plasmodium vivax]
          Length = 1263

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 151/529 (28%), Positives = 271/529 (51%), Gaps = 59/529 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
            V I + +  ++L+YA  +IL R + D RDGLK V RRI++ M ++     K+ Y KCAR
Sbjct: 152 DVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKKCAR 211

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+ +  AA RYTE ++ 
Sbjct: 212 IVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEYN-AAAMRYTEAKIS 270

Query: 137 KAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              + +L D++ ++ V++  N+DG+  EP V C++ P +L+NG  GIAV + +NIP HNL
Sbjct: 271 NFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHNL 330

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVS 254
            +V++  ++ + NP I  D L  II+GPDF TG +I+ +   ++N Y TGRGSI IR   
Sbjct: 331 VDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSNV 390

Query: 255 HIEKTSGDR----------------------EQIVVTEIPYQVNKAAMLEKIAELVREKR 292
            +E T  D+                      +++V+  +P  V    ++E +  ++ EK+
Sbjct: 391 FLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEKK 450

Query: 293 IV---DIADLRDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVAL-N 345
                 +  +RDES+++  R+V+EL++    + I + L   ++YT +Q+ +  N V + +
Sbjct: 451 NEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIGH 510

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                +F+L   L+ +   R + +           +   H++    +    + E++  ++
Sbjct: 511 QNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIISFLQ 570

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            + N E  +    +                             L++ Q + IL +++ +L
Sbjct: 571 KNQNIEEIKNFFKKN--------------------------FQLNDYQIQHILSMKIQKL 604

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             +           +   +++  D+++   R+  +I +EL  +K++  T
Sbjct: 605 VNIKNVHFGPHKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGT 653



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 124/314 (39%), Gaps = 28/314 (8%)

Query: 576  FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             V    +      +L   S    Y   V  L   S  ++G  +  ++  ++   IT +  
Sbjct: 942  KVKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSK--SITGMAK 999

Query: 636  FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
            F E +      Y++  +++G ++      F++  + G    K       +    C   ++
Sbjct: 1000 FEESKK-----YLIVCSENGKMKIINNDVFLKKKKKGIRLFKNKKD---IHFSYCNFSDN 1051

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-------------IVL 742
             ++ T  G  ++FP+S  ++ + +NS+G + ISL K D+V+ +              I+ 
Sbjct: 1052 CIVGTASGHIIQFPLSNFKI-SKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIF 1110

Query: 743  HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
             +   + + +   +    +RR       +    K  + ++G     + + ++ +E     
Sbjct: 1111 LSKGGHGKMVNLGELKVQKRRGKGYKIMKFKRAKRGAPIQGGGEARKEENVRKEENMRDE 1170

Query: 803  VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALVAVFPVNDNDQIILVSDKGT 861
             +E+G    + +    ++NR      A        +G  L  +    DND +I+++D   
Sbjct: 1171 KNEEG---ESEAPAPLMANRQADQTPAHSTDADEFLGFKLYDMTKRKDNDFLIMITDHAV 1227

Query: 862  LIRVPVNEIRIASR 875
            LIR  +  ++  +R
Sbjct: 1228 LIRKNITLLKKKNR 1241



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 790  CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              + +  +++++  SE G  K  ++  F    +  KGIR     K       +     N 
Sbjct: 997  MAKFEESKKYLIVCSENGKMKIINNDVFLKKKK--KGIRLFKNKKD------IHFSYCNF 1048

Query: 850  NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +D  I+ +  G +I+ P++  +I+ + + G    S  K+++VV +      E
Sbjct: 1049 SDNCIVGTASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDE 1100


>gi|313192091|emb|CBX19905.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 159/289 (55%), Positives = 216/289 (74%), Gaps = 1/289 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  +V F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYVNF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 288


>gi|313192089|emb|CBX19904.1| gyrase A [Clostridium perfringens]
          Length = 286

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 156/286 (54%), Positives = 214/286 (74%), Gaps = 1/286 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYIN 239

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S  
Sbjct: 240 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 285


>gi|70671793|gb|AAZ06259.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671795|gb|AAZ06260.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671797|gb|AAZ06261.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 245

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 148/245 (60%), Positives = 193/245 (78%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSV
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAA 120

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ A
Sbjct: 121 GIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKA 180

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 181 YESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLR 240

Query: 301 DESDR 305
           DESDR
Sbjct: 241 DESDR 245


>gi|254993922|ref|ZP_05276112.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 492

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 132/579 (22%), Positives = 256/579 (44%), Gaps = 92/579 (15%)

Query: 336 LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R H+L GL  A++
Sbjct: 1   SYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALS 60

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            LDEV+++IR S +   A+  L  +                             SE Q  
Sbjct: 61  ILDEVIKLIRGSKDKRDAKLNLQTK--------------------------YDFSEKQAE 94

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K+EL  +K +  T 
Sbjct: 95  AIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA 154

Query: 516 RRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
           RRT +   + +  ++ E  +  ED++V+V+  GYVKR     Y A          + M++
Sbjct: 155 RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKE 209

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITT 632
            D    +  +++  S+L F+S G      V  LP    +  G  + ++ S L+ GE I +
Sbjct: 210 ADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 269

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCT 691
            +     ++       +F TK+G  +++ ++++         +A+KL   DE+L+V    
Sbjct: 270 AIAI---QAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLID 326

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
              DI L TK G  +R+ I+ I     R + GV+ I+L + D VI   +++  +      
Sbjct: 327 GTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAINLKQDDIVIGGIVLMPNE------ 379

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                        ++ IL  +++G  K+
Sbjct: 380 ---------------------------------------------QKHILLATQRGSLKQ 394

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
             + +F   +R+ +G+      K N     + +   ++ND + + ++   ++ + V  +R
Sbjct: 395 MKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLR 453

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           I  R + G  +     +    S+  +   EI D +++ +
Sbjct: 454 ITDRYSNGSFVLDETMEGEPTSIW-LAIPEIKDTSDAKD 491


>gi|313192099|emb|CBX19909.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 157/289 (54%), Positives = 215/289 (74%), Gaps = 1/289 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 239

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E 
Sbjct: 240 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEI 288


>gi|124806110|ref|XP_001350630.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
 gi|23496755|gb|AAN36310.1| DNA gyrase subunit A;evidence=inferred from direct assay
           [Plasmodium falciparum 3D7]
          Length = 1222

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 162/547 (29%), Positives = 282/547 (51%), Gaps = 63/547 (11%)

Query: 3   EHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           ++I ++  E  K I      V I + +  S+L+YA  +IL R + D RDGLK V RRI++
Sbjct: 155 DNINNNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIW 214

Query: 59  GMMQMGVEWNKK-YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
            M ++    +KK Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      LLI+G GNF
Sbjct: 215 SMYEINKGIDKKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNF 274

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSV+ +  AA RYTE ++    + +L D++  + V++  N+DG+ +EP VLC++ P +L+
Sbjct: 275 GSVEYN-AAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLI 333

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAV + ++IP HNL +V + C+  + N +I  D L  II+GPDF TG +I+ +  
Sbjct: 334 NGCSGIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYD 393

Query: 237 I-KNAYATGRGSIVIRGVSHIEKTSGDR----------------------EQIVVTEIPY 273
           I KN Y +G+G+  IR     E    D+                      ++I++  +P 
Sbjct: 394 ILKNIYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPP 453

Query: 274 QVNKAAMLEKIAELVREKRIV---DIADLRDESDRQGYRVVIELKRGASADVILN---QL 327
            V    ++E I  L+ +K+      +  +RDES+++  R+V+ELK+ +  + I N    L
Sbjct: 454 NVKPNELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYL 513

Query: 328 YRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           ++YT++Q  +  N V +       +F+L   +K +   R + +    +      + + ++
Sbjct: 514 FKYTNMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNI 573

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           +    I    + +++   + + N E  +  L                             
Sbjct: 574 IDLYLIIQNKILDIITFFQKNQNIEQIQLYL--------------------------KNN 607

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L+  Q + IL ++L +L  +   D  ++ N +  +IK   +I+++   +  +I QEL+
Sbjct: 608 FKLNPEQIKYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELI 667

Query: 507 SVKDELD 513
            +K++  
Sbjct: 668 YIKNKYG 674



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 122/296 (41%), Gaps = 20/296 (6%)

Query: 576  FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             +    +V     +L   +    +   V+ L + S  ++G  +  I+  ++   IT I  
Sbjct: 915  KIKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKN--ITGITK 972

Query: 636  FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
            F E     N  Y++  +++G ++      F++  + G    K       +    C   ++
Sbjct: 973  FQE-----NKKYLIVCSENGKMKVINNDVFLKRKKKGIKLFKNKKN---IYFSYCNFNDN 1024

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
             ++ TK G  ++FP+S+ ++ + +NS+G + ISLAK D+V+ +    + + +        
Sbjct: 1025 CIVGTKNGYIIQFPLSSFKI-SKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIF 1083

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF---ILTVSEKGFGKRT 812
               +   ++I+ +  +I   K          + + ++   K+     I  ++ K   K  
Sbjct: 1084 VTKNGFGKMINLNELKIQKKKGKGHRIMKFKKSKTRKDNKKDIEKKQINAINNKDKDK-- 1141

Query: 813  SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
               D   +N     +  T V +      L  +   N+ D +I+++D   LIR  ++
Sbjct: 1142 ---DIPSNNDDNNILHNTKVDEF-LGFKLYDMNKQNEKDILIMITDHAVLIRKNMS 1193



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 519  RIVEGLLDME-DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
            +I+    ++         +  ++  S  G +K +   V+   +R  KG      +   + 
Sbjct: 959  QIIHSSKNITGITKFQENKKYLIVCSENGKMKVINNDVFL--KRKKKGIKLFKNKKNIYF 1016

Query: 578  TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            +     + + + +  +  G++ +  +    I    + G      +SL + +++  ++ + 
Sbjct: 1017 SY---CNFNDNCIVGTKNGYIIQFPLSSFKISKKNSLG---NKCISLAKNDKVVDLLSYE 1070

Query: 638  EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
             +E +  N  ++F TK+G  +   L++     + GK
Sbjct: 1071 NNEKNLKNYKIIFVTKNGFGKMINLNELKIQKKKGK 1106



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 792  ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            + +  +++++  SE G  K  ++  F    R  KGI+     K       +     N ND
Sbjct: 972  KFQENKKYLIVCSENGKMKVINNDVF--LKRKKKGIKLFKNKKN------IYFSYCNFND 1023

Query: 852  QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              I+ +  G +I+ P++  +I+ + + G    S AK+++VV +
Sbjct: 1024 NCIVGTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDL 1066


>gi|313192097|emb|CBX19908.1| gyrase A [Clostridium perfringens]
          Length = 285

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 156/285 (54%), Positives = 214/285 (75%), Gaps = 1/285 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S  
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 284


>gi|68248472|gb|AAY88730.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 228

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 126/223 (56%), Positives = 166/223 (74%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    
Sbjct: 6   SKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTD 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RY
Sbjct: 66  FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           P H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G
Sbjct: 186 PPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYG 228


>gi|112806708|emb|CAJ28004.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 218

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 152/218 (69%), Positives = 182/218 (83%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+ M + G  WN+K+VK +RI G+VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAMQEGGYHWNRKHVKSSRIVGDVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+D DPPAA RYTE RL K AH LL+D+ K+TVDF+ NYDG+ QEP
Sbjct: 61  SLRVPLIDGQGNFGSIDADPPAAMRYTESRLTKVAHELLEDIDKETVDFQDNYDGAEQEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNL EV +G +A+IDNP IDL ALMEI+ GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLAEVCNGAMAIIDNPAIDLPALMEIVPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG   IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVEIERRGND 218


>gi|313192103|emb|CBX19911.1| gyrase A [Clostridium perfringens]
          Length = 282

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 156/283 (55%), Positives = 214/283 (75%), Gaps = 1/283 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 282


>gi|224026477|ref|ZP_03644843.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
 gi|224019713|gb|EEF77711.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
          Length = 877

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 164/707 (23%), Positives = 291/707 (41%), Gaps = 92/707 (13%)

Query: 1   MTEHIISSDEEE------EKGITSVSITDE---------MQNSYLTYAINVILGRAIPDL 45
           M+E     D ++            V  TDE          QN +L YA  VIL RA+P +
Sbjct: 1   MSEDTFDKDTDKLPEKEGHSDYKPVDQTDEAVKHQLSGMYQNWFLDYASYVILERAVPHI 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q   
Sbjct: 61  NDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ--- 113

Query: 106 LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EP
Sbjct: 114 -KELLIDCQGNWGNILTGDSAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGRNREP 170

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           V L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L         PD
Sbjct: 171 VTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFKL--------YPD 222

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           F TG  I       + Y  G    V+R  + I  +  D + + ++EIPY    +++++ I
Sbjct: 223 FQTGGSI-----DVSRYNDGERGGVVRVRAKI--SKLDNKTLCISEIPYGKTTSSLIDSI 275

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            + + + +I       D++  +   ++I L  G S+D  L+ LY +T  +   S N   +
Sbjct: 276 LKAIEKGKIKI--RKVDDNTARKVEILIHLAPGVSSDKTLDALYAFTDCEVNISPNCCVI 333

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +  KP   T+  +L+  V    +++ +  +   N+  +  H      I +       +  
Sbjct: 334 DNKKPHFLTVSDVLRKSVNNTRDLLRKELEIQKNETLETLHFASLEKIFIEERIYKDKQF 393

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
             + N + A   + +R                            +++     ++E+++AR
Sbjct: 394 EQAENMDIACEHIDERLTP-----------------FYPQFVREVTKEDILRLMEIKMAR 436

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVE 522
           +    +D     +  L  EI+E   I +  + L     +    +KD+     PRRT I  
Sbjct: 437 ILKFNKDKADELIARLKAEIEE---IDNHLAHLTEYTIEWYRHLKDKYGKDFPRRTEIRN 493

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
               +  +     E + +                       +G  G  ++ ++F+ +   
Sbjct: 494 FDTIVATKVVEANEKLYINR--------------------EEGFIGTGLKKDEFICN--- 530

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            S    V+ F   G     K+ R+       +    +NI   N    I  ++ + + +  
Sbjct: 531 CSDIDDVIIFYKDGKY---KIVRISDKLFVGKNILYVNIFKKNDKRTIYNVI-YRDGKEG 586

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           ++ +     T     R   ++     ++    +   +   EI+ V  
Sbjct: 587 YHYIKRFNVTSMIRDREYDVTQGNPGSKIVYFSANPNGEAEIIKVTL 633


>gi|256422125|ref|YP_003122778.1| DNA topoisomerase IV subunit A [Chitinophaga pinensis DSM 2588]
 gi|256037033|gb|ACU60577.1| DNA topoisomerase (ATP-hydrolyzing) [Chitinophaga pinensis DSM
           2588]
          Length = 846

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 151/604 (25%), Positives = 271/604 (44%), Gaps = 73/604 (12%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++   +DE  +  +    + D  +N +L YA  VIL RA+P + DGLKPV RRIL  M +
Sbjct: 5   DNTQPADESLQNILH---LGDMYENWFLDYASYVILERAVPSVEDGLKPVQRRILHAMKE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           M    + ++ K A + G  M  +HPHG+A+I DA+  + Q    + LLI+ QGN+G V  
Sbjct: 62  MD---DGRFNKVANVIGSTMQ-FHPHGDASIGDAIVNLGQ----KDLLIDTQGNWGDVRT 113

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  L       T  ++ +YDG   EP+ L  ++P +L  G  G
Sbjct: 114 GDDAAAARYIEARLSKFA--LEVGFNSKTTQWQLSYDGRKNEPLALPMKFPLLLAQGAEG 171

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T I  HN  E+++  +  +     ++         PDFPTG +I         Y
Sbjct: 172 IAVGLSTKILPHNFIELLEASIKYLKGKKFEI--------FPDFPTGGMI-----DVANY 218

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GR    +R  +HIE    D++ +++ ++PY V   A++E I +     +I        
Sbjct: 219 NDGRRGGKVRVRAHIE--EKDKKTLLIKDVPYGVTTTALMESIVKANDNGKIKIKK--VV 274

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++  +   + ++L  G S D+ ++ LY +T  +   S N   +   KP   T+  +L++ 
Sbjct: 275 DNTAKDVEIEVQLAPGISPDITIDALYAFTDCEISISPNACVIIDDKPRFLTVSELLRSS 334

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             F + ++ R  +  L++ +D+ H      I                  +   +EL Q+ 
Sbjct: 335 ADFTQALLKRELEIRLSELQDKWHYTSLEKIF---------------FEKGIYKELEQKH 379

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
               D + +I  ID        +    ++      + E  + R+  L  +++  ++ S+ 
Sbjct: 380 ---KDWEAVIAAIDKGFAPYKKNLKREITREDILKLTEKPVRRIYRLDINELNEQIKSIE 436

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +IK+    L++   ++        ++  +    R     E + +++  D I  + + + 
Sbjct: 437 ADIKDVKHDLAN---MVDFTVAYYENLLKKYGKGR-----ERITEIKTFDTIQVQQVAIA 488

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            + + YV RV             G  G  ++ ++FV D    S   +++ F   G +   
Sbjct: 489 NAKI-YVNRVD------------GFIGTSLKKDEFVAD---CSDLDNIIVFKKDGKMIIT 532

Query: 602 KVWR 605
           KV  
Sbjct: 533 KVAD 536


>gi|82793752|ref|XP_728165.1| DNA gyrase subunit A [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484380|gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
          Length = 968

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 156/527 (29%), Positives = 273/527 (51%), Gaps = 59/527 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
            V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++    ++K Y KCAR
Sbjct: 189 DVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGSDRKSYKKCAR 248

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+ +  AA RYTE R+ 
Sbjct: 249 IVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEYN-AAAMRYTEARIS 307

Query: 137 KAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              + +L D++  + VD+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HNL
Sbjct: 308 DFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNL 367

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVS 254
            +V++  +  + N  I  D L  +I+GPDF TG +I+ +   ++N Y TG+GSIVIR   
Sbjct: 368 VDVINASINFLINEKITNDELFNLIKGPDFSTGGIIITKKDALRNIYNTGKGSIVIRSNV 427

Query: 255 HIEKTSGDR----------------------EQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             E    ++                      +++++  +P  V    ++E I  ++ E++
Sbjct: 428 FYEYVRNNKTYIHHINELSNLENLECDNKSSKKLIIKNLPPNVKPNELIENIVTVLNERK 487

Query: 293 IV---DIADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSLFSVNMVALNG 346
                 ++ +RDES++   R+V+EL++ +  + I N    L++YTS++  +  N V +  
Sbjct: 488 NEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTSMEINYHCNFVCIGY 547

Query: 347 -YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                +F+L   L+ +   R + + +  K   N  +   +++         + +++  + 
Sbjct: 548 ENSYTQFSLKPFLQLWCENRIKFIKKNYKIKNNNLQKELNIIDLYLTIQKKILDIISFLH 607

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            + N E  +  L                               L+E Q + IL +++ +L
Sbjct: 608 KNQNIEQIQNYLKSN--------------------------FKLNEDQIKYILSMKIQKL 641

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
             +   +   + N++  +IK    I+ +   +  II  EL+ +K++ 
Sbjct: 642 INIKNINFDIQKNNIIKKIKSNQYIIDNVQEIKQIIINELIHIKNKY 688


>gi|297519073|ref|ZP_06937459.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 248

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/243 (48%), Positives = 168/243 (69%), Gaps = 2/243 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVS 254
            EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRGS+ +R V 
Sbjct: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245

Query: 255 HIE 257
             E
Sbjct: 246 KKE 248


>gi|87240782|gb|ABD32640.1| WD40-like [Medicago truncatula]
          Length = 398

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 115/415 (27%), Positives = 200/415 (48%), Gaps = 42/415 (10%)

Query: 499 GIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            +I+QE + +K++  +PRR+ + +     +ED D I  E+M++T+S  GY+KR+  S + 
Sbjct: 14  QVIEQEAIDLKNKFASPRRSILEDTDDGQLEDIDVIPNEEMLLTLSEKGYLKRMKPSTFN 73

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RG  G+S   ++  D ++D  +   H  VL+FS  G VY  + +++P  S  A G  
Sbjct: 74  LQHRGTIGKSVGKLKMNDSMSDFIVCRAHDFVLYFSDKGTVYSARAYKIPECSRTASGTP 133

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+ ILSL+ GERIT+I+P  E     ++ +++  T  G ++R  L+ F  I  SG IA++
Sbjct: 134 LVQILSLSDGERITSIIPVSE---FTDDQFLLMLTMQGYIKRVPLNSFSSIRSSGIIAIQ 190

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE+  V  CT ++ + + +  G  +      IR    RN+ G   + L +GD++ S
Sbjct: 191 LVPGDELKWVRCCTNDDFVAMASHNGMVILSLCIQIRTLG-RNTRGALAMRLKEGDRMAS 249

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + I+  A  +  E I  +   + +                                    
Sbjct: 250 VDIIPAAMWNNLETISKLPESNGKSY--------------------------------DG 277

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA--LVAVFPVND---NDQ 852
            ++L +SE G GKR     FR+S+ +  G+     S  + + A  +V      D   ++Q
Sbjct: 278 PWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFVVGFTLAEDGESDEQ 337

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++LVS  GT+ R+ V +I I SR  +GV++       ++ +   I  +E   E E
Sbjct: 338 VVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTASLISATECEPEEE 392



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 104/266 (39%), Gaps = 38/266 (14%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T I+      +D         ++ ++  GY+KRVPL+ + + R    G   + + 
Sbjct: 142 DGERITSIIPVSEFTDD-------QFLLMLTMQGYIKRVPLNSFSSIRSS--GIIAIQLV 192

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +  +   +    V   S  G V      ++       RG      + L +G+R+ +
Sbjct: 193 PGDELKWVRCCTNDDFVAMASHNGMVILSLCIQIRTLGRNTRG---ALAMRLKEGDRMAS 249

Query: 633 IMPFPE---------------DESSWNNLYVVFATKHGNVRRNKLSD--FIQINRSGKIA 675
           +   P                +  S++  +++F ++ G+ +R  LS      +NR G I 
Sbjct: 250 VDIIPAAMWNNLETISKLPESNGKSYDGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIG 309

Query: 676 MKLDSRDEILSVETC--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            K  + D + +V             +  ++L ++ G   R  +  I + + R + GV  +
Sbjct: 310 YKFSAEDRLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVRDISIQS-RFARGVILM 368

Query: 728 SLAKGDQVISMAIVLHADADYDERIC 753
            L    ++ + +++   + + +E + 
Sbjct: 369 RLDHAGKIQTASLISATECEPEEELA 394


>gi|288924619|ref|ZP_06418556.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
 gi|288338406|gb|EFC76755.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
          Length = 912

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 158/624 (25%), Positives = 265/624 (42%), Gaps = 90/624 (14%)

Query: 2   TEHIISSDEEEEKGITSVSITDE-----------------MQNSYLTYAINVILGRAIPD 44
            EH+  + EE  + +T  + +D                   QN +L YA  VIL RA+P 
Sbjct: 8   NEHLTGTGEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPH 67

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRIL  M +M    + +Y K A I G  M  +HPHG+A+I DAL +M Q  
Sbjct: 68  IEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQMGQ-- 121

Query: 105 SLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
             + LLI+ QGN+G++  GD  AA RY E RL K A  L       T D++ +YDG  +E
Sbjct: 122 --KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA--LDVVFNPKTTDWQLSYDGRNKE 177

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P+ L A++P +L  G  GIAVG+++ +  HNL E+ D  +  +   +  +         P
Sbjct: 178 PITLPAKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRI--------YP 229

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DFPTG  I       + Y  G+    ++  + IE    D + + V EIPY    A +++ 
Sbjct: 230 DFPTGGAI-----DVSKYNDGQRGGALKVRAKIE--KVDNKTLAVREIPYSKTTATLIDS 282

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           I + V + +I   A   +++      ++I L  G S+D  ++ LY ++  +   S N   
Sbjct: 283 ITKAVEKGKI--KARKIEDNTAAEVEILIHLAPGVSSDKTMDALYAFSDCEINISPNCCV 340

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +   KP   T+  +L+  V         RT  LL K        +   +  A+L+ +   
Sbjct: 341 IEDNKPGFLTVSDVLRHSVD--------RTMGLLRKELQIRRNELLEQLFFASLERIFIE 392

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
            R     +            A  + + I  +D+       +    ++      ++E+++ 
Sbjct: 393 ERIYKERK---------FETAKTMDEAIAFVDEKLTPFKPNFIREVTRDDILRLMEIKMQ 443

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIV 521
           R+    +D     +  +  E+ E    L+    +  +       +K++     PRRT I 
Sbjct: 444 RILKFNKDKADELIAKIKAEVAEIDKDLAH---MTDVTVNWFEFIKNKYGKEHPRRTEIR 500

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                       +    VV  +   Y+ R             +G  G  ++ ++FV +  
Sbjct: 501 --------NFDTIEATTVVEANQKLYINRQ------------EGFVGTGLKKDEFVCN-- 538

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWR 605
             S    ++ F   G     +V  
Sbjct: 539 -CSDLDDIIIFYKDGKFKVVRVAD 561


>gi|313192101|emb|CBX19910.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 153/280 (54%), Positives = 211/280 (75%), Gaps = 1/280 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 239

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ I
Sbjct: 240 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 279


>gi|198276965|ref|ZP_03209496.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
 gi|198270490|gb|EDY94760.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
          Length = 881

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 144/561 (25%), Positives = 243/561 (43%), Gaps = 68/561 (12%)

Query: 1   MTEHIISSDE---------EEEKGITSVSITDE---------MQNSYLTYAINVILGRAI 42
           M+E     DE         EE      VS TDE          QN +L YA  VIL RA+
Sbjct: 1   MSEDTFDKDEKEMANLPEKEEHSDYKPVSTTDEAVKHQLSGMYQNWFLDYASYVILERAV 60

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q
Sbjct: 61  PHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ 116

Query: 103 DWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
               + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  
Sbjct: 117 ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGRN 170

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   D  L        
Sbjct: 171 REPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEDFQL-------- 222

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
            PDF TG  I       + Y  G    V+R  + I  +  D + + ++EIPY    ++++
Sbjct: 223 YPDFQTGGSI-----DVSRYNDGERGGVVRVRAKI--SKIDNKTLCISEIPYGKTTSSLI 275

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           + I + + + +I       D++      +++ L  G S+D  L+ LY +T  +   S N 
Sbjct: 276 DSILKAIEKGKI--KVRKVDDNTAGKVEILVHLTPGVSSDKTLDALYAFTDCEVNISPNC 333

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
             ++  KP   ++  +LK  V     ++ +  +   ++  +  H      I +       
Sbjct: 334 CVIDNKKPHFLSVSKVLKKSVDNTLALLRKELEIQRDETLETLHFASLEKIFIEERIYKD 393

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           +    + + + A   + +R                            +++     ++E++
Sbjct: 394 KQFEQADSMDAACEHIDERLTP-----------------YYPQFVREVTKEDILRLMEIK 436

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTR 519
           +AR+    +D     +  L     E  +I +  + +          +K++     PRRT 
Sbjct: 437 MARILKFNKDKADEFIARLKA---ELEEIDNHLAHITEYTIDWYQRLKEKYGKNFPRRTE 493

Query: 520 IVEGLLDMEDEDCIVREDMVV 540
           I      +  +     E + +
Sbjct: 494 IRNFDTIVATKVAEANEKLYI 514


>gi|315607502|ref|ZP_07882497.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
 gi|315250685|gb|EFU30679.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
          Length = 912

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 159/624 (25%), Positives = 265/624 (42%), Gaps = 90/624 (14%)

Query: 2   TEHIISSDEEEEKGITSVSITDE-----------------MQNSYLTYAINVILGRAIPD 44
            EH+  + EE  + +T  + +D                   QN +L YA  VIL RA+P 
Sbjct: 8   NEHLTGTGEENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPH 67

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRIL  M +M    + +Y K A I G  M  +HPHG+A+I DAL +M Q  
Sbjct: 68  IEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQMGQ-- 121

Query: 105 SLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
             + LLI+ QGN+G++  GD  AA RY E RL K A  L       T D++ +YDG  +E
Sbjct: 122 --KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA--LDVVFNPKTTDWQLSYDGRNKE 177

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P+ L A++P +L  G  GIAVG+++ +  HNL E+ D  +  +   +  +         P
Sbjct: 178 PITLPAKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRI--------YP 229

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DFPTG  I       + Y  G+    ++  + IE    D + + V EIPY    A +++ 
Sbjct: 230 DFPTGGAI-----DVSKYNDGQRGGALKVRAKIE--KVDNKTLAVREIPYSKTTATLIDS 282

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           I + V + +I   A   +++      ++I L  G S+D  ++ LY ++  +   S N   
Sbjct: 283 ITKAVEKGKI--KARKIEDNTAAEVEILIHLAPGVSSDKTMDALYAFSDCEINISPNCCV 340

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +   KP   T+  +L+  V         RT  LL K        +   +  A+L+ +   
Sbjct: 341 IEDNKPGFLTVSDVLRHSVD--------RTMGLLRKELQIRRNELLEQLFFASLERIFIE 392

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
            R     +            A  + + I  +D+       D    ++      ++E+++ 
Sbjct: 393 ERIYKERK---------FETAKTMDEAIAFVDEKLTPFKPDFIREVTRDDILRLMEIKMQ 443

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIV 521
           R+    +D     +  +  E+ E    L+    +  +       +K++     PRRT I 
Sbjct: 444 RILKFNKDKADELIAKIKAEVAEIDKDLAH---MTDVTVNWFEFIKNKYGKEHPRRTEIR 500

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                       +    VV  +   Y+ R             +G  G  ++ ++FV +  
Sbjct: 501 --------NFDTIEATTVVEANQKLYINRQ------------EGFVGTGLKKDEFVCN-- 538

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWR 605
             S    ++ F   G     +V  
Sbjct: 539 -CSDLDDIIIFYKDGKFKVVRVAD 561


>gi|32261029|emb|CAD99012.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/213 (59%), Positives = 163/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+AA+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|313192113|emb|CBX19916.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 154/280 (55%), Positives = 212/280 (75%), Gaps = 1/280 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ II
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINII 279


>gi|112806706|emb|CAJ28003.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 218

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 153/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|32261026|emb|CAD99009.2| DNA gyrase subunit A [Campylobacter jejuni]
 gi|32261027|emb|CAD99010.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 125/213 (58%), Positives = 162/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|32261028|emb|CAD99011.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 124/213 (58%), Positives = 161/213 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++D+ D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|4558480|gb|AAD22627.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 211

 Score =  264 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 126/211 (59%), Positives = 159/211 (75%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K A
Sbjct: 1   IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L
Sbjct: 121 TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
            E+VDG + ++D+ D  L+ LM+ I+GPDFP
Sbjct: 181 NELVDGLLYLLDHKDASLEDLMQFIKGPDFP 211


>gi|189462865|ref|ZP_03011650.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
 gi|189430481|gb|EDU99465.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
          Length = 879

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 162/707 (22%), Positives = 294/707 (41%), Gaps = 92/707 (13%)

Query: 1   MTEHII------SSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDL 45
           M+E I       SSD+E       V   DE          QN +L YA  VIL RA+P +
Sbjct: 1   MSEDIFDKNDIQSSDKEAHSDYKPVDQGDETVKHQLSGMYQNWFLDYASYVILERAVPHI 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q   
Sbjct: 61  NDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ--- 113

Query: 106 LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EP
Sbjct: 114 -KDLLIDCQGNWGNILTGDDAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGRNREP 170

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           V L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +           E    PD
Sbjct: 171 VTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGE--------EFHLYPD 222

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           F TG  I       + Y  G    V+R  + I  +  D + + ++EIPY    +++++ I
Sbjct: 223 FQTGGSI-----DVSRYNDGERGGVVRVRAKI--SKIDNKTLCISEIPYGKTTSSLIDSI 275

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            + + + +I       D++      +++ L  G S+D  L+ LY +T  +   S N   +
Sbjct: 276 LKAIEKGKI--KVRKVDDNTADKVEILVHLAPGVSSDKTLDALYAFTDCEVNISPNCCVI 333

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +  KP   ++  +L+  V     ++ +      N+  +  H         A+L+++    
Sbjct: 334 DNKKPHFLSVSVVLRKSVDNTLSLLRQELNIQRNETLETLH--------FASLEKIFIEE 385

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R   + +  + E         ++    + ID+            +++     ++E+++AR
Sbjct: 386 RIYKDKQFEQAE---------NMDAACEHIDERLTPFYPQFVREVTKEDILKLMEIKMAR 436

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVE 522
           +    +D     +  L  +I+E   I +  + +          +K++     PRRT I  
Sbjct: 437 ILKFNKDKADEFITKLKADIEE---IDNHLAHITEYTIDWYTRIKEKYGKNFPRRTEIRN 493

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
               +  +     E + +                       +G  G  ++ ++++ +   
Sbjct: 494 FDTIVATKVAEANEKLYINR--------------------EEGFIGTGLKKDEYICN--- 530

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            S    V+ F   G     K+ R+       +    +NI   N    I  ++ + + +  
Sbjct: 531 CSDIDDVIIFYKDGKY---KIVRVSDKLFVGKNILYVNIFKKNDKRTIYNVI-YRDGKEG 586

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           ++ +     T     R   ++     ++        +   E++ V  
Sbjct: 587 FHYIKRFNVTSMIRDREYDVTQGTPGSKIVYFTANPNGEAEVIKVTL 633


>gi|228473476|ref|ZP_04058229.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275083|gb|EEK13886.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 863

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 164/696 (23%), Positives = 291/696 (41%), Gaps = 86/696 (12%)

Query: 1   MTEHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M EH I     + +   +++ I+   QN +L YA  VIL RA+P L DG KPV RRI+  
Sbjct: 1   MEEHPIPPQASQGEPQETITRISGMYQNWFLDYASYVILERAVPALEDGFKPVQRRIMHS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++    + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG++G+
Sbjct: 61  MDELE---DGRYNKVANIVGNTM-KYHPHGDASIGDAIIQLGQ----KELLIDTQGSWGN 112

Query: 120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +  GD  AA RY E RL K A  L          ++ +YDG   EPV L  ++P +L  G
Sbjct: 113 ILTGDDAAAPRYIEARLSKFA--LDVLFSPKVTQWQKSYDGRNDEPVHLPVKFPLLLAQG 170

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T I  HN  E++D  V  ++    +L         PDFPT   I+  TG  
Sbjct: 171 AEGIAVGLSTKILPHNFNELIDASVLYLEGKPFEL--------YPDFPTAG-IMDATGYS 221

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +    GR  +  R          D+  +V+TEIP+    +++++ I +   + +I  +  
Sbjct: 222 DGMRGGRIRVRAR------IAQRDKSTLVITEIPFGTTTSSLIDSILKANEKGKIKVLK- 274

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             D++      +++ L +G S D  ++ LY +T  ++  S     + G +P    +  IL
Sbjct: 275 -VDDNTAANVEILVHLPKGISPDKTIDALYAFTDCETSVSPLCCVIEGSRPLFIGVSDIL 333

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K       E++ +  +  L+    + H                     S      R E+ 
Sbjct: 334 KKSTDRTVEILKKELEVKLDDLEQKWH-------------------NASLEKIFIREEMY 374

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
               N SD + L   +              +++     + ++ + R+T          L 
Sbjct: 375 IDFKNYSDKESLYAYLYKRFEPFAEQLLRPITDEDLERLTQIPMIRITRYDTYKAEENLL 434

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRE 536
            +   I E  D L++   L+        +++ +      R+T I             +  
Sbjct: 435 KIEENIAEVKDHLAN---LIAFAIDYFRNLQKKYGKGKDRKTEIRP--------FDTIEA 483

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             VV  +   YV R             +G  G  ++ +++V D    S    ++ F++ G
Sbjct: 484 TKVVVRNLKLYVNR------------EEGFVGTSLKKDEYVAD---CSDIDDIIVFTADG 528

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +   KV           GK ++++    + +   T+        +    Y+   T  G 
Sbjct: 529 KMIITKVTE-----KSYIGKNIVHVGVFKKNDT-RTVYNLVYRNGNDKISYIKRFTVTGI 582

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVET 689
           + R+K  D ++ ++  ++   +   +   E++SV  
Sbjct: 583 I-RDKEYDVVEPHKDSQVLYFSANPNGEAEVISVIL 617


>gi|313192111|emb|CBX19915.1| gyrase A [Clostridium perfringens]
          Length = 277

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 151/278 (54%), Positives = 210/278 (75%), Gaps = 1/278 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           +  RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 1   SGMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 60

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 61  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 120

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 121 GRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 179

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 180 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 239

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ I
Sbjct: 240 KDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 277


>gi|32261030|emb|CAD99013.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/213 (58%), Positives = 162/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|313159342|gb|EFR58706.1| DNA gyrase/topoisomerase IV, A subunit [Alistipes sp. HGB5]
          Length = 1048

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 169/678 (24%), Positives = 290/678 (42%), Gaps = 83/678 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            ++E G+    +T   +N +L YA  VIL RA+P + DGLKPV RRIL  M  +    + 
Sbjct: 47  TQDEGGVRK--LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHAMKVVD---DG 101

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           +Y K A I G+ M  YHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA 
Sbjct: 102 RYNKVANIVGQTMQ-YHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAG 156

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A+ ++    K T ++   YDG  +EPV L  ++P +L  G  GIAVG+A+
Sbjct: 157 RYIEARLSKFANEVV--FNKKTTEWMLTYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLAS 214

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  HN  E+++ C+A +           E    PDFPTG +        + Y  G    
Sbjct: 215 KILPHNFVELINACIAHLQGR--------EFQLYPDFPTGGM-----ADVSRYNDGLRGG 261

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            ++  + I  +  D+  + +TEIPY     ++ + I +   + +I       D++     
Sbjct: 262 AVKVRAKI--SKIDKRTLAITEIPYTTTTESIKDSIIKANDKGKIKIKK--VDDNTADRV 317

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            +VI++    S+D  ++ LY +T  +   + N   +   KP    +  IL+      + +
Sbjct: 318 EIVIQVSPDESSDKTIDALYAFTDCEVSIAPNACLIWEDKPHFLGVSEILRRSAEHTKWL 377

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R  +  L +  +  H      I +   +++ ++I  S + E A   + +        K
Sbjct: 378 LGRELEIRLGELNEAWHAASLERIFIE--NKLYQLIEGSKSREEAYAAVDK---GLEPFK 432

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L+               + LS+VQ   + EL+  R++    D   NE+  +  +IK   
Sbjct: 433 KLLRR------------EVTLSDVQ--RLTELKFIRISRYDSDKADNEIRQIEEDIKSTQ 478

Query: 489 DILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             L+    L          ++D+      RRT + E             E   V V++  
Sbjct: 479 YDLNH---LTEYAVAYYERIRDKYGKGRERRTELRE---------FDNIEATKVAVTN-- 524

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                   +Y  +  G  G  G  M+D + V D    S    V+ F+  G      + ++
Sbjct: 525 ------AKLYVDRAEGFFGI-GKSMKDAELVCD---CSDIDDVIVFTKDGRY---VITKV 571

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +   +G   I +   N    I  ++         N   ++       + R+K  D  
Sbjct: 572 SDKAFFEKGIYYIGVFKRNDERTIYNVL----YRDGKNGPIMMKRCAIKAITRDKEYDIT 627

Query: 667 Q-INRSGKIAMKLDSRDE 683
           +   +S  + M ++   E
Sbjct: 628 KGTPKSEILYMSVNPNGE 645


>gi|32135167|emb|CAD99014.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 124/213 (58%), Positives = 161/213 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++D+ D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|112806700|emb|CAJ28000.1| DNA gyrase subunit A [Mesorhizobium ciceri]
          Length = 218

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 154/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRILF   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILFAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|317505289|ref|ZP_07963218.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
 gi|315663592|gb|EFV03330.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
          Length = 903

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 153/588 (26%), Positives = 256/588 (43%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 39  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 95

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K A
Sbjct: 96  TMQ-FHPHGDASIGDALVQMGQ----KDLLVDCQGNWGNILTGDRAAAPRYIEARLSKFA 150

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ 
Sbjct: 151 --LDVVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 208

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +   D  L         PDFPTG  I       + Y  G+   V++  + IE  
Sbjct: 209 DSAIKYLKGEDFQL--------YPDFPTGGAI-----DVSKYNDGQRGGVLKVRAKIE-- 253

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S
Sbjct: 254 KLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKI--KAKRVDDNTAAEVEIQVHLAPGVS 311

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V         RT  LL K
Sbjct: 312 SDKTMDALYAFSDCEINLSPNCCVIEDNKPVFLTVSDVLRHGVD--------RTMGLLRK 363

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                 +  G  +       + RI       +  + E       A+++ D I  +D    
Sbjct: 364 ---ELQIRRGELLEQLFFASLERIFIEQRIYKEKKFE------QAANMDDAIAFVDQKLT 414

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    ++      ++E+++ R+    +D     +  +  E+ E  + L+    +  
Sbjct: 415 PFKPDFIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIENDLNH---MTD 471

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       +K++     PRRT I             +    VV  +   Y+ R       
Sbjct: 472 VTINWFTFIKNKYGKDHPRRTEIR--------SFDTIDSAKVVEANQKLYINRQ------ 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++FV +    S    ++ F   G     KV  
Sbjct: 518 ------EGFIGTGLKKDEFVCN---CSDIDDIILFYKTGKYKIIKVAD 556


>gi|112806704|emb|CAJ28002.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 218

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 154/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +AVIDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAVIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|112806702|emb|CAJ28001.1| DNA gyrase subunit A [Mesorhizobium huakuii]
          Length = 218

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 153/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|297516663|ref|ZP_06935049.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 510

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/498 (24%), Positives = 215/498 (43%), Gaps = 54/498 (10%)

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIELKR 316
              +   +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +     V++    
Sbjct: 3   WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 62

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKY 375
               D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y
Sbjct: 63  RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 122

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K   R H+L GL +A  N+DEV+ IIR    P+ A   LM R               
Sbjct: 123 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------- 164

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  
Sbjct: 165 -----------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASER 213

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           ++  ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V     
Sbjct: 214 KMNNLLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV----- 268

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R+ +       G+  +  D         ++  V+F  S G  Y      LP  S + 
Sbjct: 269 ---RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARG 323

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR+GK
Sbjct: 324 QGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGK 377

Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI---SL 729
             + L     ++         + +L  T+ G+ + FP+S +   +      +  I     
Sbjct: 378 ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEA 437

Query: 730 AKGDQVISMAIVLHADAD 747
           A+G+  ++   VL   + 
Sbjct: 438 ARGEDGLAQLYVLPPQST 455



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 345 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 399

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 400 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 436


>gi|313621653|gb|EFR92449.1| DNA gyrase subunit A [Listeria innocua FSL S4-378]
          Length = 327

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/352 (28%), Positives = 173/352 (49%), Gaps = 59/352 (16%)

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P
Sbjct: 1   TKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVP 60

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +
Sbjct: 61  EYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAK 117

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV   R + GVRGI
Sbjct: 118 IRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG-RTAAGVRGI 176

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D+VI M ++   +                                          
Sbjct: 177 RLREDDEVIGMEVLEDDE------------------------------------------ 194

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  ++T    G   +T +  + + NR G G++   +++ N  G LVA+  V
Sbjct: 195 ---------KVLVVTEKGYGK--QTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTV 241

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              + ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 242 TGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 293



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 78  ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 135

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 136 SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 192

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 193 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 246

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 247 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 305

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 306 ETLITQVPDESFEDAPGSDIEE 327


>gi|261414926|ref|YP_003248609.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371382|gb|ACX74127.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325658|gb|ADL24859.1| putative DNA topoisomerase IV, A subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 846

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 154/676 (22%), Positives = 275/676 (40%), Gaps = 86/676 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +       +L YA  VIL RA+P   DGLKPV RRIL  M +     + +Y K A I G 
Sbjct: 18  LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFEN---HDGRYQKVATIVGR 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHG+A+I DAL  + Q    + LLI+ QGN+G+   GD  AA RY E RL   A
Sbjct: 75  TMA-YHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +      +T ++ P+YDG  +EPV L  ++P +L  G  GIAVG++T+I  HN  E+ 
Sbjct: 130 --VDVVFNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +A +      L         PDF TG +I       + Y  G+    ++  + IE  
Sbjct: 188 EASIACLRGKKFTL--------YPDFFTGGII-----DVSDYNDGQRGGKVKVRAKIE-- 232

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + + + EIPY     +++E I +   + +I       D++  QG  +++ L+ G  
Sbjct: 233 KVDNKTLAIREIPYGTTTVSLIESIVKANDKGKIKIK--HVDDNTSQGVEILVHLQPGTD 290

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V ++ LY +T  +   S     +    P+   +  ILK       +++       L  
Sbjct: 291 PQVAIDALYAFTDCEKSLSPCTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANELKH 350

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             D+ H+     I +    EV  +I+ + + E   R + +                    
Sbjct: 351 LEDKWHMTTLEKIFIE--KEVYEVIKKAKDREQIIRLVREGLTPY--------------- 393

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            +       +++ +   ++E+ + R++   R+     L  L   I +C     ++  ++ 
Sbjct: 394 -LKRLHRQTVTDEEIGKLIEIPIRRISHYDREKADQLLQELEENIAKCKY---NQEHIID 449

Query: 500 IIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                  ++  +      RRT+I E          +  + + V                 
Sbjct: 450 YAVNHFKNILKKYGEGKERRTQIAEFGKVNAVHVALANQKLYVNR--------------- 494

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  M+ E++   LF VS +  ++ F + G     KV ++       +   
Sbjct: 495 -----KEGFVGTGMKKEEY---LFDVSEYDDLIVFKADG---SFKVVKVSDKDFVGKDII 543

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM- 676
           L+   + +    I  ++     +   +    +     G V R+K   ++  N+ G   + 
Sbjct: 544 LVEKFNKDDERHIYNVIH----QDGKDGYAYIKRFNVGGVTRDK-DYYMGKNKPGSKILY 598

Query: 677 ---KLDSRDEILSVET 689
               ++   E++ V  
Sbjct: 599 MSSNMNGEAEVVEVIL 614


>gi|325299748|ref|YP_004259665.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324319301|gb|ADY37192.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 879

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 152/636 (23%), Positives = 266/636 (41%), Gaps = 77/636 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++         +K +    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M 
Sbjct: 19  SDTNYKPASPADKAVKYQ-LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHAMK 77

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
           ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++ 
Sbjct: 78  RLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNIL 129

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  
Sbjct: 130 TGDDAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGRNREPVTLPVKFPLLLAQGVE 187

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+++ I  HN  E+ D  +A +           E    PDF TG  +       + 
Sbjct: 188 GIAVGLSSKILPHNFNELCDAAIAYLHGE--------EFHLYPDFQTGGAV-----DVSR 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G    V+R  + I  +  D + + ++EIPY    +++++ I + V + +I       
Sbjct: 235 YNDGERGGVVRVRAKI--SKIDNKTLCISEIPYGKTTSSLIDSILKAVEKGKI--KVRKV 290

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++      +++ L  GAS+D  L+ LY +T  +   S N   +   KP   ++  +L+ 
Sbjct: 291 DDNTADKVEILVHLAPGASSDKTLDALYAFTDCEVNISPNCCVIEDKKPHFLSVGTVLRK 350

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            V     ++ R  +   ++  +  H      I +       R    + N + A   + +R
Sbjct: 351 SVDHTLGLLRRELEIQRDETLETLHFASLEKIFIEERIYKDRGFEQAENMDAACAHIDER 410

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +++     ++E+++AR+    +D     +  L
Sbjct: 411 LTP-----------------FYPQMVREVTKDDILRLMEIKMARILKFNKDKADENIARL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVREDM 538
             +I+E  + L+    L          +K++     PRRT I      +  +     E +
Sbjct: 454 KADIEETENHLAH---LTDYTIAWFRRLKEKYGAQFPRRTEIRNFDTIVATKVAEANEKL 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +                       +G  G  ++ ++FV +    S    V+ F   G  
Sbjct: 511 YINR--------------------EEGFIGTGLKKDEFVCN---CSDIDDVIIFYRDGKY 547

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
              KV R+       +    +N+   N    I  ++
Sbjct: 548 ---KVVRVQDKLFVGKNILYVNVFKKNDKRTIYNVI 580


>gi|213023935|ref|ZP_03338382.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 265

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 106/258 (41%), Positives = 159/258 (61%), Gaps = 4/258 (1%)

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH GYV
Sbjct: 1   DILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYV 60

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP 
Sbjct: 61  KYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPE 120

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F + 
Sbjct: 121 ASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRP 177

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R + GVRGI 
Sbjct: 178 RSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTATGVRGIK 236

Query: 729 LAKGDQVISMAIVLHADA 746
           LA  D+V+S+ I     A
Sbjct: 237 LAGDDKVVSLIIPRGEGA 254



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 15/230 (6%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+   A   D   E    +  +QE+ ++  +  G     P++       R   G     
Sbjct: 28  RRTEITANSADINIE----DLISQEDVVVTLSHQGYVKYQPLTDYEA-QRRGGKGKSAAR 82

Query: 729 LAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + D +  + +    D         R+ +MK               I +L    + E  
Sbjct: 83  IKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 142

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +    +E   +   +   +  G  K+T+  +F     +G  I A +++  +E   L+ V
Sbjct: 143 TAILPVRE-YEEGVNVFMATASGTVKKTALTEFSRPRSAG--IIAVNLNDGDE---LIGV 196

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 197 DLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 246



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 30  TEITANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFI 89

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVE 895
             L+     N +D I+  S +G L  + V ++  ASR  +G   V +     +ER+ ++ 
Sbjct: 90  DRLLVA---NTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAIL 146

Query: 896 RIRESEI 902
            +RE E 
Sbjct: 147 PVREYEE 153


>gi|295092032|emb|CBK78139.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 504

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 144/515 (27%), Positives = 252/515 (48%), Gaps = 29/515 (5%)

Query: 260 SGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
             D++++V+TEIPY +        L  IAELV  K++ D+ D+ ++S+++G R+V+EL++
Sbjct: 9   KADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGIRIVLELRK 68

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ E   R+ + L
Sbjct: 69  DADVEKIRNILYKKTKLEDTYGVNMLAIVKGRPETLNLRGILKNYLDFQYENNTRKYRVL 128

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K  ++  +  GL  A   +D ++ ++R S N + A+  L+    +A   K        
Sbjct: 129 LEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDAKACLINGDTSAIRFKT------- 181

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                   G +  +E Q  AILE+RL +L GL    +  E      +IKE   ILS +  
Sbjct: 182 -PELEKDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKILSDKGT 240

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +  +IK++L ++K E   PRRT I +G   + DE  +   ++V  +   GY + V  S Y
Sbjct: 241 MDQVIKEDLAAIKREFAYPRRTLIEDGKEVVYDESAVEVREVVFVMDRFGYSRIVDRSTY 300

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R             E+  T +        +  F+  G +++ KV  +P+G  + +G 
Sbjct: 301 DRNRETI----------ENENTHVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLRDKGT 350

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+   + G +  T+  F  + SS      +FAT+   ++R    +F   NR    A 
Sbjct: 351 PIDNLCKFD-GTKEQTV--FVTNASSLQGKLFLFATRDAMLKRVPGEEFETNNR-MVAAT 406

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           KL   D ++SV+   + ++++L T  G  +RF +  I V   +N+ GVRGI L +G+ + 
Sbjct: 407 KLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISV-QKKNARGVRGIKLGRGEALE 465

Query: 737 SMAIVLHADA---DYDERICYMKHMSAQRRLISGD 768
            + ++         Y E+  ++  +   RR   G+
Sbjct: 466 QVYLLGANTESVITYKEKQVHLNRLKQGRRDGKGN 500



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            L+ +  L  +     KR    +F  +NR          +K+ E  +LV+V P ++  ++
Sbjct: 373 SLQGKLFLFATRDAMLKRVPGEEFETNNR------MVAATKLQEGDSLVSVQPADEASEV 426

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L +D G  +R  ++EI +  +  +GV      + E +
Sbjct: 427 VLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEAL 464


>gi|462225|sp|P34030|GYRA_SPICI RecName: Full=DNA gyrase subunit A
 gi|49349|emb|CAA79524.1| DNA gyrase subunit A [Spiroplasma citri]
 gi|745459|prf||2016285D DNA gyrase:SUBUNIT=A
          Length = 227

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/222 (56%), Positives = 165/222 (74%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           +   + +  I  + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M  + + 
Sbjct: 6   NDGYDYDGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMT 65

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           + K++ K ARI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R  LI+G GNFGS+DGDPPA
Sbjct: 66  YEKQHKKSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPA 125

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  ++ D+ K+T  F  NYDGS +EP  L   +PN+LVNG  GIAVGM
Sbjct: 126 AMRYTEAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGM 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
           ATNIP HNL EV+DG +AV  NP+I    LM+II+GPDFPTG
Sbjct: 186 ATNIPPHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227


>gi|3548920|gb|AAC68576.1| DNA gyrase A [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 196

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 158/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLA 180

Query: 197 EVVDGCVAVIDNPDID 212
           EVV+GC+A ID+ +I 
Sbjct: 181 EVVNGCLAYIDDENIS 196


>gi|281426196|ref|ZP_06257109.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
 gi|281399772|gb|EFB30603.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
          Length = 978

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 160/672 (23%), Positives = 279/672 (41%), Gaps = 77/672 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 114 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 170

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 171 TMQ-FHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 225

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ 
Sbjct: 226 --LDVVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 283

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +   D  L         PDFPTG  I       + Y  G+   V++  + IE  
Sbjct: 284 DAAIKYLRGEDFQL--------YPDFPTGGAI-----DVSKYNDGQRGGVLKVRAKIE-- 328

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S
Sbjct: 329 KLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKI--KAKRVDDNTAAEVEIQVHLAPGVS 386

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V         RT  LL K
Sbjct: 387 SDKTMDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVD--------RTMGLLRK 438

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                 +  G  +       + RI       +  + E       A+D+ + +  +D    
Sbjct: 439 ---ELQIRRGELLEQLFFASLERIFIEQRIYKEKKFE------QAADMNEAVAFVDLKLT 489

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    ++      ++E+++ R+    +D     +  +  E+ E    L     +  
Sbjct: 490 PFKPDFIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDL---EHMTD 546

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +     + +K++     PR T I             +    VV  +   Y+ R       
Sbjct: 547 VTINWFMFIKNKYGNEHPRHTEIR--------SFDTIDSAKVVEANQKLYINRQ------ 592

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++ ++FV +    S    ++ F   G     K+ ++       +G  
Sbjct: 593 ------EGFIGTGLKKDEFVCN---CSDIDDIIIFYKNGKY---KIIKVADKIFVGKGII 640

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + +    +  +     T     R   L+     ++       
Sbjct: 641 WLQVFKKNDKRTIYNVV-YKDGREGYYYMKRFNVTSMTRDREYDLTAGTPGSKVNYFTAN 699

Query: 678 LDSRDEILSVET 689
            +   EI+ V  
Sbjct: 700 PNGEAEIIKVVL 711


>gi|167752022|ref|ZP_02424149.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
 gi|167660263|gb|EDS04393.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
          Length = 918

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 152/598 (25%), Positives = 259/598 (43%), Gaps = 75/598 (12%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            EE G+    +T   +N +L YA  VIL RA+P ++DGLKPV RRIL  M  +    + +
Sbjct: 46  SEEGGVRK--LTGMYRNWFLDYASYVILERAVPHVQDGLKPVQRRILHAMKAVD---DGR 100

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAER 129
           Y K A I G+ M  YHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA R
Sbjct: 101 YNKVANIVGQTMQ-YHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGR 155

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y E RL K A  L     K T ++  +YDG  +EPV L  ++P +L  G  GIAVG+A+ 
Sbjct: 156 YIEARLSKFA--LDVVFNKKTTEWMRSYDGRNEEPVTLPVKFPLLLAQGADGIAVGLASK 213

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E+++  +A +           + +  PDFPT  +I       + Y  G     
Sbjct: 214 ILPHNFIELINAAIAHLQGR--------DFVLYPDFPTAGMI-----DVSRYNDGLRGGT 260

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           ++  + I  +  D+  + +TEIPY     ++ + I +   + +I       D++  +   
Sbjct: 261 VKVRARI--SKIDKRTLAITEIPYTTTTESIKDSIVKANEKGKIKI--RKVDDNTAEKVE 316

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++++    S+D  ++ LY +T  +   + N   +   KP    +  IL+       E++
Sbjct: 317 IIVQVAPDESSDKTIDALYAFTDCEVSIAPNACVICDDKPHFLGVSEILRRSAEHTRELL 376

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               +  LN+  +  H        +  ++++ ++I      E A   + +     + +  
Sbjct: 377 KMELEIRLNELNEAWHAAS--LERIFIVNKLYQLIEGCKTREEAYAAVGKGLEPFTKVLR 434

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                +D                  + + EL+  R++    D   NE+  +  +I +   
Sbjct: 435 RAVTTED-----------------IQRLTELKFIRISRYDSDKADNEIRQIEEDIAQTQH 477

Query: 490 ILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            L+    L          ++D+      RRT + E             E   V V++   
Sbjct: 478 HLAH---LTDYTIAYYERIRDKYGKGRERRTELRE---------FDSIEATKVAVTN--- 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  +Y  +  G  G  G  M+D +FV D    S    V+ F+  G     KV  
Sbjct: 523 -----AKLYVDRVEGFFGI-GKSMKDSEFVCD---CSDIDDVIVFTKDGRYVITKVSD 571


>gi|294054277|ref|YP_003547935.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613610|gb|ADE53765.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 691

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 131/540 (24%), Positives = 225/540 (41%), Gaps = 52/540 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            ++S +E       +  + D     +L YA  VIL RA+P   DGLKPV RRIL  M ++
Sbjct: 25  ELLSDEEIFNLKTDTGHVDDMFSEWFLDYASYVILERAVPHANDGLKPVQRRILHSMREL 84

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDG 122
               + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+  +  G
Sbjct: 85  E---DGRYNKVANVIGNTM-KYHPHGDASICDAMVQLGQ----KDLLIDTQGNWGNTFTG 136

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E RL K A  L       T ++  +YDG  +EP  L  ++P +L  G  GI
Sbjct: 137 DSAAAARYIEARLSKFA--LDVVFNPKTTNWLASYDGRNKEPETLPVKFPLLLAQGVEGI 194

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG+A  I  HN  E++DGC++ +     ++         PDFPTG +        + Y 
Sbjct: 195 AVGLACKILPHNFIELIDGCISFLRKQTPEI--------VPDFPTGGI-----ADVSEYN 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G+    ++  + +E     +  + +TE+P+     ++++ I     + +I       ++
Sbjct: 242 NGKRGGRVKVRARMEARK--KNLLAITELPFGKTTTSLIDSILSANDKGKIKI--SRVED 297

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +      ++I L  G+  +     LY +T  +   S N+  +   KP  F  + +L    
Sbjct: 298 NTADKVEILIYLPSGSDPETAEQALYAFTDCEVSVSTNICVIENEKPHFFAAVDLLYLAT 357

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
               E++    +  L +  ++ H      I +                    + + +R  
Sbjct: 358 EKTRELLRMELEIQLAELEEKWHFSSLEKIFI-------------------EKRIYRRIE 398

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                + +I  +DD            ++      +LE+++ R++          + SL  
Sbjct: 399 EEETWEGVIQTVDDGLKPYKKLFKREITRDDILRLLEIKIKRISKYDSFKADEFIQSLED 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
            I E    L     L     +    +K +      RRT +         E  I  E + V
Sbjct: 459 AIAETQKNL---KYLTKYTIKWFNDLKKKYGKGRERRTELASFKKVAAHEVVIANETLYV 515


>gi|320353625|ref|YP_004194964.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320122127|gb|ADW17673.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 133/503 (26%), Positives = 225/503 (44%), Gaps = 54/503 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +      ++L Y   VI  RAIPD+ DGLKPV RRIL     +    + ++ K A + GE
Sbjct: 12  LHQLFDTNFLDYTSYVIRERAIPDVDDGLKPVQRRIL---QTLANMDDGRFHKVANVVGE 68

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M K HPHG+ +I+DAL  +    + +  LI+ QGNFG++  GD  +A RY ECRL   A
Sbjct: 69  TM-KLHPHGDQSIFDALVNL----ANKGYLIDRQGNFGNIFTGDQASAPRYIECRLSPLA 123

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
                   KD  +F  +YDG  QEPV L A+ P +L+ G  GIAVGMAT I  HN GE++
Sbjct: 124 R--ETLFNKDLTEFIDSYDGRMQEPVRLPAKIPLLLLLGAEGIAVGMATKIMPHNFGELL 181

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              +  +           E +  PDFP G +I         Y  G G I  R        
Sbjct: 182 QAQIDYLRGQ--------EFVLYPDFPRGGII-----DVADYNHGNGRIRCRAKLE---- 224

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + IV+TE+PY +   A++E I +  +  ++   +   ++   +   V I+L RG  
Sbjct: 225 QPDSKTIVITELPYNLTTQALIESIEKAAKANKLKIAS--INDYTAEKVEVEIKLARGVL 282

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+  ++ LY +T  +   S ++V +    P +  +  +L+         + R  +  L +
Sbjct: 283 AEETIDALYAFTDCELSVSPSLVTIVDNMPRQMAVEEVLRRNTDRLVANLERELQIELGR 342

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             D+ H      I +                      L ++    ++ K++   + DS  
Sbjct: 343 LEDKWHARKLEQIFI-------------------EERLYKQIEEKTNYKEVQATVRDSLL 383

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              ++    ++      +LE+++ R++    +  + EL  +  +I +    L+    ++G
Sbjct: 384 PFANELKRKITPEDVERLLEIKIRRISRYDINRQQKELRDIEKQIGQIKKHLTD---MIG 440

Query: 500 IIKQELLSVKDELDT--PRRTRI 520
                L  +  +  +  PR + +
Sbjct: 441 FTVAYLGELAAKYGSQFPRASEL 463


>gi|91093371|gb|ABE11566.1| GyrA [Escherichia coli]
 gi|91093393|gb|ABE11567.1| GyrA [Escherichia coli]
 gi|91093397|gb|ABE11568.1| GyrA [Escherichia coli]
 gi|91093415|gb|ABE11569.1| GyrA [Escherichia coli]
 gi|91093421|gb|ABE11570.1| GyrA [Escherichia coli]
 gi|91093439|gb|ABE11571.1| GyrA [Escherichia coli]
 gi|91093441|gb|ABE11572.1| GyrA [Escherichia coli]
 gi|91093447|gb|ABE11573.1| GyrA [Escherichia coli]
 gi|91093455|gb|ABE11574.1| GyrA [Escherichia coli]
 gi|91093483|gb|ABE11575.1| GyrA [Escherichia coli]
 gi|91093491|gb|ABE11576.1| GyrA [Escherichia coli]
 gi|91093493|gb|ABE11577.1| GyrA [Escherichia coli]
 gi|91093497|gb|ABE11579.1| GyrA [Escherichia coli]
          Length = 211

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 123/206 (59%), Positives = 163/206 (79%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEI 219
           NL EV++GC+A ID+ DI ++ LME 
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEH 211


>gi|282880747|ref|ZP_06289446.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305379|gb|EFA97440.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 906

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 148/588 (25%), Positives = 249/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T D++ +YDG  +EP+ L A++P +L  G  GIAVG+++ I  HNL E+ 
Sbjct: 152 --LDVVFNPKTTDWQLSYDGRNKEPITLPAKFPLLLTQGAEGIAVGLSSKILPHNLNEIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              +  +      L         PDFPTG  I         Y  G+    ++  + IE  
Sbjct: 210 QAAIHYLKGEPFTL--------YPDFPTGGSI-----DVEKYNDGQRGGTLKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S
Sbjct: 255 KLDNKTLVIKEIPFSKTTTTLIDSILKAIDKGKI--KARKVDDNTAAEVEIQVHLSPGIS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V          T  LL K
Sbjct: 313 SDKTIDALYAFSDCEINISPNCCVIEDNKPVFLTVSDVLRHSVD--------STMGLLRK 364

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +     +   +  A+L+++    R   + +            A DI   +  +DD   
Sbjct: 365 ELEIRRNELLEQLFFASLEKIFIEERIYKDKK---------FEEAKDIDAAVAHVDDRLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D      + +     E  +I    + +  
Sbjct: 416 PFKPHFIREVTRDDILRLLEIKMHRILKFNKDKAN---DFIVRTKAEIKEIDHDLAHMTD 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       ++ +     PR T I             +    VV  +   Y+ R       
Sbjct: 473 VTINWFEFIQTKYGKEHPRLTEIR--------SFDTIEATKVVEANEKLYINRQ------ 518

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++FV +    S    ++ F   G     +V  
Sbjct: 519 ------EGFVGTGLKKDEFVCN---CSDIDDIIIFYRDGKYKIIRVAD 557


>gi|294672800|ref|YP_003573416.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
 gi|294473600|gb|ADE82989.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
          Length = 890

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 145/588 (24%), Positives = 254/588 (43%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P L DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 31  LSGMYQNWFLDYASYVILERAVPHLGDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 87

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  G   AA RY E RL K A
Sbjct: 88  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGSSAAAPRYIEARLSKFA 142

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ 
Sbjct: 143 --LDTVFNPKTTEWKMSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFCEIC 200

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  ++ +      L         PDFPT   I       + Y  G+   VI+  + IE  
Sbjct: 201 DAAISYLHQQPFAL--------YPDFPTSGSI-----DVSKYNDGQRGGVIKVRAKIE-- 245

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D++ +V+ EIP+      + + I + + + +I   A   ++       + + L  G S
Sbjct: 246 KIDQKTLVIREIPFSKTSETLQDSIVKAIEKGKI--KARKVEDLTAAEVEIQVHLAPGVS 303

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP+  T+  +L+  V   ++++ +  +    +
Sbjct: 304 SDKTIDALYAFTDCEVSISPNCCVIEDNKPQFLTVSDVLRHSVERTKDLIRQELEIRKGE 363

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++ H          +L+ +    R   + +            A ++  + + ID+   
Sbjct: 364 LLEQLH--------FQSLERIFIEERIYKDKK---------FEQAPNVDAVCEHIDERLT 406

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +++     +LE+++ R+    +D     +  L  EI+E    L++   L+ 
Sbjct: 407 PYYPQFIREVTKDDILKLLEIKMQRILKFNKDKADELMARLKAEIEEIDRDLAN---LVE 463

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       +KD+     PR T I         +     + + +  S              
Sbjct: 464 VTANWFQFLKDKYGKDHPRLTEIRNFDTIDSAKVAEANQKLYINRS-------------- 509

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  G  G  ++ ++FV +    S    V+ F   G     +V  
Sbjct: 510 ------DGFIGTGLKKDEFVCN---CSDLDDVIIFYKDGKYKIVRVAE 548


>gi|52843256|gb|AAU88057.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843258|gb|AAU88058.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843260|gb|AAU88059.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 157/198 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|299141868|ref|ZP_07035003.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
 gi|298576719|gb|EFI48590.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
          Length = 903

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 160/672 (23%), Positives = 279/672 (41%), Gaps = 77/672 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 39  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 95

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 96  TMQ-FHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 150

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ 
Sbjct: 151 --LDVVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 208

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +   D  L         PDFPTG  I       + Y  G+   V++  + IE  
Sbjct: 209 DAAIKYLRGEDFQL--------YPDFPTGGAI-----DVSKYNDGQRGGVLKVRAKIE-- 253

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S
Sbjct: 254 KLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKI--KAKRVDDNTAAEVEIQVHLAPGVS 311

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V         RT  LL K
Sbjct: 312 SDKTMDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVD--------RTMGLLRK 363

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                 +  G  +       + RI       +  + E       A+D+ + +  +D    
Sbjct: 364 ---ELQIRRGELLEQLFFASLERIFIEQRIYKEKKFE------QAADMNEAVAFVDLKLT 414

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    ++      ++E+++ R+    +D     +  +  E+ E    L     +  
Sbjct: 415 PFKPDFIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDL---EHMTD 471

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +     + +K++     PR T I             +    VV  +   Y+ R       
Sbjct: 472 VTINWFMFIKNKYGNEHPRHTEIR--------SFDTIDSAKVVEANQKLYINRQ------ 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++ ++FV +    S    ++ F   G     K+ ++       +G  
Sbjct: 518 ------EGFIGTGLKKDEFVCN---CSDIDDIIIFYKNGKY---KIIKVADKIFVGKGII 565

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + +    +  +     T     R   L+     ++       
Sbjct: 566 WLQVFKKNDKRTIYNVV-YKDGREGYYYMKRFNVTSMTRDREYDLTAGTPGSKVNYFTAN 624

Query: 678 LDSRDEILSVET 689
            +   EI+ V  
Sbjct: 625 PNGEAEIIKVVL 636


>gi|91093495|gb|ABE11578.1| GyrA [Escherichia coli]
          Length = 211

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 124/206 (60%), Positives = 163/206 (79%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEI 219
           NL EV++GC+A ID+ DI ++ LME 
Sbjct: 186 NLTEVINGCLAYIDDEDISIEGLMEH 211


>gi|325855710|ref|ZP_08171901.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
 gi|325483763|gb|EGC86725.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
          Length = 992

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 149/677 (22%), Positives = 276/677 (40%), Gaps = 77/677 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 124 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 180

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 181 TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 235

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 236 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 293

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V  +           E    PDFPTG  I       + Y  G+   V++  + +E  
Sbjct: 294 DAAVGCLRGE--------EFHLYPDFPTGGSI-----DVSKYNDGQRGGVLKVRARVE-- 338

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    +++ E I + V + ++       ++       + + L  G S
Sbjct: 339 KLDSKTLVIREVPFTKTASSLQESITKAVEKGKLKI--RKVEDMTASEVEIQLHLTPGTS 396

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +L+  V   + ++    +   ++
Sbjct: 397 SDKTIDALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKMELEIRKHE 456

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A  + +++  +D    
Sbjct: 457 LEEQL-----FYNSLERIFIEDRIYKERKFE------------TARSLDEVVAFVDSKLE 499

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+R+ R+    +D     +  +  EI E    L     ++ 
Sbjct: 500 PYKKTFVREVTRDDILRLLEIRMQRILKFNKDKADELIQKIKAEIAEIDKDLG---EMVR 556

Query: 500 IIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++      RRT I      +  +     E +        Y+ R       
Sbjct: 557 VTIEWFTHLKEKYGKDHLRRTEIKNFDTIVAAKVVDANEKL--------YIDRQA----- 603

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                  G  G  ++  +FV +    S    V+ F   G     KV R+       +G  
Sbjct: 604 -------GFIGTGLKKAEFVQN---CSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVL 650

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + + ++    +     T     +   ++     +R       
Sbjct: 651 HVQVFKKNDKRTIYNVV-YRDGKTGPYYIKRFNVTSITRDKEYDVTLGTPGSRICYFTAN 709

Query: 678 LDSRDEILSVETCTQEN 694
            +   E++ +      +
Sbjct: 710 PNGEAELIKITLDPNPD 726


>gi|326799067|ref|YP_004316886.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326549831|gb|ADZ78216.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 902

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 138/528 (26%), Positives = 242/528 (45%), Gaps = 55/528 (10%)

Query: 1   MTEHIISS-----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M+E   ++     ++E      ++ I+   +N +L YA  VIL RA+P + DGLKPV RR
Sbjct: 1   MSEETDNNELSGNNDEALSHNQTIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL  + +M    + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG
Sbjct: 61  ILHSLKEMD---DGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQ----KNLLIDCQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G    GD  AA RY E RL K A+ ++     DT +++ +YDG  +EPV L  ++P +
Sbjct: 113 NWGDPTTGDSAAAPRYIEGRLSKFANDVV--FNPDTTEWQLSYDGRNREPVTLPVKFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG+AT I  HN  E++DG + V+     +L         PDFPTG +    
Sbjct: 171 LAQGAEGIAVGLATKIMPHNFVELLDGSIEVLRGGRPNL--------VPDFPTGGL---- 218

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               +AY  G     ++  + IE    D++ + +TEIPY      +++ +  +    +  
Sbjct: 219 -ADVSAYNEGMRGGKVKVRARIE--ERDKKTLAITEIPYGTTTGGLIDSV--IAANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      +V+ L  G S DV ++ LY +T  +   S N   +   KP   ++
Sbjct: 274 IKIKKIEDNTAATVEIVVHLAPGISPDVTIDALYAFTDCEVSISPNTCVIRDDKPHFMSV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L       + ++ +  +  LN+  +         I  ++L ++        +P+   
Sbjct: 334 NDVLIENTKHTKGLLKQELEIRLNELLE--------KIFFSSLLKIFIQEGMYKHPD--- 382

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                   NA + + ++D+++             +     + +++  ++ +T        
Sbjct: 383 ------YENAGNFEIVVDVLNRLFTPFFDRFYREILPEDYKKLIDKPMSSITRFDVKKAD 436

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRI 520
            ++ +L  EIKE    L     L          +KD+      RRT I
Sbjct: 437 EQMKALEDEIKEVKYNLKH---LTDYAIAWFQKLKDKYGKGRERRTEI 481


>gi|182411928|ref|YP_001816994.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
 gi|177839142|gb|ACB73394.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
          Length = 708

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 159/718 (22%), Positives = 280/718 (38%), Gaps = 101/718 (14%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +    +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + ++ K A 
Sbjct: 62  EEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEME---DGRFHKLAN 118

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRL 135
           I G  M ++HPHG+A+I  AL  + Q    R  L+E QGNFG+ + GD  AA RY E RL
Sbjct: 119 IVGATM-RFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARL 173

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L      T  ++ +YDG  +EPV L A++P VL+ G  GIAVG+AT I  HN 
Sbjct: 174 TAFAKDVL--FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNF 231

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            ++    +  +      +         PDFPTG V        + Y  G     ++  + 
Sbjct: 232 NDLCRAAINHLQGKTFRI--------YPDFPTGGV-----ADFSEYNDGERGGKVKIRAK 278

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     +  + +TE+P+     +++E I     + +I       D++      +++ L 
Sbjct: 279 IEI--RSKYLLAITELPFGSTTESLIESILAANAKGKIKI--RHVDDNTADAVEILVHLP 334

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +G+  + ++ QLY +T+ Q+  S     +   KP    +  ILK  V   + ++ R  + 
Sbjct: 335 QGSDPEKLIQQLYVFTACQTNLSPAACVIEDDKPHFLGVREILKRSVDKTKALLKRELEI 394

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              +   + H      I +       RI R     +T +  L +           +    
Sbjct: 395 RQAELEQQWHWDSLERIFIEE-----RIYRRIEKSKTWQSVLDEIREGLQPFLKQLRRP- 448

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        +++     + E+R+ R++   R      +  +     E  +  ++  
Sbjct: 449 -------------VTDDDITRLTEIRIKRISAYNRFQADEAIKKIEA---ELRETKANLK 492

Query: 496 RLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            L          ++++      RRT          DE   +    VV+ +   YV R   
Sbjct: 493 ALTAYAVAWFEQLQEKYGKGLKRRTS--------YDEIEQINAAEVVSANQRLYVNRED- 543

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
                      G  G+  R  ++V D    +   SV+     G     KV ++       
Sbjct: 544 -----------GFIGLNWRQHEYVQD---CTILDSVVCLMRDG---SLKVSKVAEKVF-- 584

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +I+            + P   D + +  +Y    +     +R ++     ++R   
Sbjct: 585 MGRDIIH----------CAVFPKDGDPNFYTMVYQDKESGKAFAKRFQIGG---LSRDKL 631

Query: 674 IAMKLDSRDEILSVETCTQEN------DILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
            ++       ++ +E    E        I +  + G  VR           + R++ G
Sbjct: 632 YSLVKSEGSRVVYLEISKTEKEMPKKLRIFIDGRSGARVREFDFELDRVPVSSRSAKG 689


>gi|317474502|ref|ZP_07933776.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
 gi|316909183|gb|EFV30863.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
          Length = 904

 Score =  256 bits (654), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 175/814 (21%), Positives = 314/814 (38%), Gaps = 89/814 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  +  I    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADTNDVNIKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  V  + N +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASVKYLHNEEFKL--------YPDFQTGGNI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R  + IE    D + +V+ EIPY    A++ + I +   + +I       ++   +
Sbjct: 244 GGAVRVRAKIE--KVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIKIKK--VEDLTSE 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK  V    
Sbjct: 300 NVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +   N+  +  H      I +       RI +     +            A +
Sbjct: 360 ALLRQELEIRKNEILESLHFSSLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +++     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDERLTPYYPTFIREVTKEDILKLMEIKMARILKFNSDKAEELIARMKADIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +K++     PRRT +         +     E + +    
Sbjct: 463 IDRHLAN---IVEYTVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+T+    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFITN---CSDLDDVIIFFRDGRYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     N+   N    I  ++ + + +   + +     T     R   ++ 
Sbjct: 556 --TDKKFVGKNILYANVFKKNDKRTIYNVV-YRDGKEGTHYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVF 716
               +R        +   E++ V             E D       G+     I   R  
Sbjct: 613 GTPDSRIVYFTANPNGEAEVIKVTLKPNPRIRRIIFEEDFSQINIKGRQAMGNIL-TRNP 671

Query: 717 AGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + ++  RG S   G +V     V  L+ D   +    +         L +G+      
Sbjct: 672 VHKIALKQRGGSTLGGRKVWFDQDVLRLNYDGRGEYLGEFQSDEQILVVLNNGEFYTSNF 731

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             N+   +     E+    K+    +    ++G+
Sbjct: 732 DVNNHYEDNIRVLEKYDPHKVWTAVLYDADQQGY 765


>gi|52843248|gb|AAU88053.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843252|gb|AAU88055.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 122/198 (61%), Positives = 155/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|52843250|gb|AAU88054.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843254|gb|AAU88056.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 122/198 (61%), Positives = 156/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|312889464|ref|ZP_07749016.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
 gi|311298016|gb|EFQ75133.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
          Length = 914

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 144/601 (23%), Positives = 262/601 (43%), Gaps = 75/601 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E     D  +   I  + +    +N +L YA  VIL RA+P + DGLKPV RRIL  +
Sbjct: 1   MSEEESQGDNNKLHNI--IPLDGLYENWFLDYASYVILDRAVPHIYDGLKPVQRRILHSL 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS- 119
            +M    + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + L+I+ QGN+G  
Sbjct: 59  KEMD---DGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQ----KNLMIDCQGNWGDP 110

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           V GD  AA RY E RL K A  +      DT  ++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 VTGDSAAAPRYIEARLSKFA--IDVAFNPDTTIWQSSYDGRNREPITLPVKFPLLLAQGA 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG+AT I  HN  E++D  +AV++    +L         PDFPTG +        +
Sbjct: 169 EGIAVGLATKILPHNFVELLDASIAVLNGIRPNL--------LPDFPTGGL-----ADAS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G+    +R  + I     D++ +V+TE+P+      ++E +     + +I   +  
Sbjct: 216 NYNEGQRGGKVRVRARI--AERDKKTLVITEVPFSTTTGGLMESVVAANDKGKIKIKS-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             +   +   ++I L  G S DV ++ LY +T  +   S N   ++  KP   ++  +L 
Sbjct: 272 IVDHTSKNVEILINLAPGISPDVTIDALYAFTDCEVSISPNTCVIHDDKPRFMSVNDMLT 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                 +E++ +  +  LN+ ++         I  ++L ++        NP         
Sbjct: 332 ESTYHTKELLKQELEIRLNELKE--------KIFFSSLLKIFIQQGMYKNPA-------- 375

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
               +++ + ++++++       S     +     + +++  ++ +T         ++ +
Sbjct: 376 -YETSANFEAVVEVLNGLFEPFFSQFYRTILAEDYKKLIDKPMSSITRFDVKKADEQMKT 434

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRED 537
           L  EIKE    L     L          +KD+      R+T +               E 
Sbjct: 435 LENEIKEVNHHLKH---LNDYAIAWFQKLKDKYGKGRERKTEL---------RTFDRVEA 482

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V ++++     +             G  G  ++ + F+ D    S    ++ F + G 
Sbjct: 483 SQVALANVKLYANL-----------EDGFIGSGLKKDKFIAD---CSDLDEIIVFRADGR 528

Query: 598 V 598
            
Sbjct: 529 C 529


>gi|61844861|emb|CAG44506.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844863|emb|CAG44507.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070001]
 gi|61844867|emb|CAG44508.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844869|emb|CAG44509.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844873|emb|CAG44510.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070002]
 gi|61844875|emb|CAG44511.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070003]
 gi|61844877|emb|CAG44512.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070005]
 gi|61844881|emb|CAG44513.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 19980863]
 gi|61844883|emb|CAG44514.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070007]
          Length = 257

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 137/257 (53%), Positives = 177/257 (68%), Gaps = 5/257 (1%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE R
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HN
Sbjct: 61  LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHN 120

Query: 195 LGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G  +AY TGRGSI +
Sbjct: 121 LRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRM 180

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R
Sbjct: 181 RGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLR 240

Query: 310 VVIELKRGASADVILNQ 326
           +VIE+KR A A V++N 
Sbjct: 241 IVIEIKRDAVAKVVINN 257


>gi|330939645|gb|EGH42950.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 194

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 124/192 (64%), Positives = 151/192 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNLGEV+DGC
Sbjct: 183 PPHNLGEVIDGC 194


>gi|327314054|ref|YP_004329491.1| DNA gyrase/topoisomerase IV subunit A [Prevotella denticola F0289]
 gi|326944941|gb|AEA20826.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola F0289]
          Length = 992

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 149/677 (22%), Positives = 276/677 (40%), Gaps = 77/677 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 124 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 180

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 181 TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 235

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 236 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 293

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V  +           E    PDFPTG  I       + Y  G+   V++  + +E  
Sbjct: 294 DAAVGCLRGE--------EFHLYPDFPTGGSI-----DVSKYNDGQRGGVLKVRARVE-- 338

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    +++ E I + V + ++       ++       + + L  G S
Sbjct: 339 KLDSKTLVIREVPFTKTASSLQESITKAVEKGKLKI--RKVEDMTASEVEIQLHLTPGTS 396

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +L+  V   + ++    +   ++
Sbjct: 397 SDKTIDALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKMELEIRKHE 456

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A  + +++  +D    
Sbjct: 457 LEEQL-----FYNSLERIFIEDRIYKERKFE------------TARSLDEVVAFVDSKLE 499

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+R+ R+    +D     +  +  EI E    L     ++ 
Sbjct: 500 PYKKTFVREVTRDDILRLLEIRMQRILKFNKDKADELIRKIKAEIAEIDKDLG---EMVR 556

Query: 500 IIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++      RRT I      +  +     E +        Y+ R       
Sbjct: 557 VTIEWFTHLKEKYGKDHLRRTEIKNFDTIVAAKVVDANEKL--------YIDRQA----- 603

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                  G  G  ++  +FV +    S    V+ F   G     KV R+       +G  
Sbjct: 604 -------GFIGTGLKKAEFVQN---CSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVL 650

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + + ++    +     T     +   ++     +R       
Sbjct: 651 HVQVFKKNDKRTIYNVV-YRDGKTGPYYIKRFNVTSITRDKEYDVTLGTPGSRICYFTAN 709

Query: 678 LDSRDEILSVETCTQEN 694
            +   E++ +      +
Sbjct: 710 PNGEAELIKITLDPNPD 726


>gi|260748873|gb|ACX48753.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 157/197 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFP 226
           DI ++ LME I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|52843262|gb|AAU88060.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843264|gb|AAU88061.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 156/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|260748875|gb|ACX48754.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 156/197 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFP 226
           DI ++ LME I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|38677892|emb|CAE30286.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 225

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/224 (63%), Positives = 180/224 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
             +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 225


>gi|288930007|ref|ZP_06423848.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328666|gb|EFC67256.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 896

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 154/623 (24%), Positives = 263/623 (42%), Gaps = 89/623 (14%)

Query: 1   MTEHIISSDEEEEKGITSVS---------------ITDEMQNSYLTYAINVILGRAIPDL 45
           M +     DE EE+G+ + S               ++   QN +L YA  VIL RA+P++
Sbjct: 1   MADEK-QQDENEEEGVETHSDYKPADRFDASAVHHLSGMYQNWFLDYASYVILERAVPNI 59

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DGLKPV RRIL  M +M    + +Y K A I G  M  +HPHG+A+I DAL +M Q   
Sbjct: 60  ADGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQMGQ--- 112

Query: 106 LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            + LLI+ QGN+G++  GD  AA RY E RL K A  L       T  ++ +YDG  +EP
Sbjct: 113 -KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA--LDTVFNPKTTQWQASYDGRNKEP 169

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           + L  ++P +L  G  GIAVG+++ I  HN+ E+    +  +      L         PD
Sbjct: 170 IALPVKFPLLLAQGAEGIAVGLSSKILPHNMRELCQAAIHYLKGEPFRL--------FPD 221

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPTG  I       + Y  G+    I+  + IE    D + +V+ EIP+  N   ++E I
Sbjct: 222 FPTGGSI-----DASRYNDGQRGGSIKVRAKIE--KLDNKTLVIREIPFSKNTTTLIESI 274

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            + V + +I   A   D++      + + L  G S+D  ++ LY ++  +   S N   +
Sbjct: 275 LKAVDKGKI--KAKRVDDNTAAEVEIQVHLAPGISSDKTIDALYAFSDCEINISPNCCVI 332

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              KP   T+  +L+  V     ++    +   ++  ++           ++L+++    
Sbjct: 333 EDNKPRFLTVSEVLRHNVDSTMGLLRMELQIRKDELLEQL--------FFSSLEKIFIEE 384

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R   + +           NA ++   ++ ID+       +    L       ++E+++ R
Sbjct: 385 RIYKDKK---------FENAENMDVAVEHIDNRLTPFKPNFIRELRREDIMRLMEIKMQR 435

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVE 522
           +    +D     L  +  EI     I    + +  +  +    + D+     PR T I  
Sbjct: 436 ILKFSKDKADELLARIKEEIA---GIDHDLAHMTDVTIKWFKFLIDKYGKDHPRLTEIKS 492

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  +     E + +                   RR  +G  G  ++ ++FV +   
Sbjct: 493 FETIEATKVVEANEKLYI------------------NRR--EGFIGTGLKKDEFVCN--- 529

Query: 583 VSTHTSVLFFSSLGFVYKEKVWR 605
            S    +L F   G     +V  
Sbjct: 530 CSDIDDILVFHRDGKYKIMRVAD 552


>gi|281421903|ref|ZP_06252902.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
 gi|281404145|gb|EFB34825.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
          Length = 953

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 146/588 (24%), Positives = 249/588 (42%), Gaps = 58/588 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 60  LSGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 116

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 117 TMQ-FHPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 171

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T D++ +YDG  +EP+ L A++P +L  G  GIAVG+++ +  HN  E+ 
Sbjct: 172 --LDVVFNPKTTDWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKVLPHNFNEIC 229

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V  +      L         PDFPTG  I       + Y  G+    ++  + I   
Sbjct: 230 DAAVHYLKGEPFQL--------YPDFPTGGAI-----DVSKYNDGQRGGALKVRAKI--D 274

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V++EIP+     ++++ I + V + +I   A   D+       +++ L  G S
Sbjct: 275 KLDNKTLVISEIPFSKTTGSLIDSITKAVEKGKI--KARKVDDVTSANVEILVHLAPGTS 332

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V     ++ +       +
Sbjct: 333 SDKTMDALYAFSDCEINISPNCCVIEDNKPVFLTISDVLRHSVDRTMGLLRKELMIRKGE 392

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++        I +       R    S + +     +  +     D     ++      
Sbjct: 393 LEEQLFFSSLERIFIEERIYKERKFEQSKSQDEVVAFIDSKLEPFKDKLFTAEVDGKGMV 452

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D   +EL  L     E  +I +  + +  
Sbjct: 453 EYAFHR--EITREDILKLLEIKMQRILKYNKDK-ADEL--LMKIKAELAEIENDLAHMTD 507

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       +K +     PR+T I             +    VV  +   Y+ R       
Sbjct: 508 VTINWFEYLKGKYGKNHPRKTEIR--------NFDTIEVTKVVEANQKLYINRQ------ 553

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++FV +    S    ++ F   G     KV  
Sbjct: 554 ------EGFVGTGLKKDEFVCN---CSDLDDIIIFYKDGKFKVTKVAD 592


>gi|187734641|ref|YP_001876753.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424693|gb|ACD03972.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 697

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 136/572 (23%), Positives = 239/572 (41%), Gaps = 77/572 (13%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +L YA  VIL RA+P + DG KPV RRIL  M ++    + +Y K A I G+ M K+HPH
Sbjct: 6   FLDYASYVILERAVPKINDGFKPVQRRILHAMDRLD---DGRYNKVANIVGDTM-KFHPH 61

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLG 147
           G+ +I DAL  + Q    + LLI+ QGN+G++  GDP AA RY E R    A  ++    
Sbjct: 62  GDRSIADALVGLGQ----KGLLIDTQGNWGNILTGDPAAASRYIEARFTSFARDVV--FS 115

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
               +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+++  +A + 
Sbjct: 116 PKVTEWQLSYDGRNKEPVSLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELIEASIAYLR 175

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG-RGSIVIRGVSHIEKTSGDREQI 266
                L         PDFPTG V+         Y  G RG+  +R  + I   +  ++ +
Sbjct: 176 GQPFQL--------LPDFPTGGVM-----DATNYRDGERGTGRVRIRARI--LTESKKLL 220

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            +TEIP+ V    +++ I     + +I       +++  Q   +++ L  GA  +     
Sbjct: 221 RITEIPFGVTTEILIDSIVSAAEKGKIKIA--RIEDNTAQHVDILVHLPAGADPEQTRKA 278

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L+ +++ +   S N   +   KP    +  IL+      +E++ +  +  L +  +  H 
Sbjct: 279 LFAFSACEVSISPNACVIVEEKPRFMCVSDILRYNTDSTKEILRQEQEIRLKELNEAWHQ 338

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
                I + N     RI     + ET    L             +         I  D  
Sbjct: 339 ASLEKIFIEN-----RIYLSIEDSETWEEVLGTIDRELQPFASRLRA------PITRDDL 387

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
           + L+E++        + R++          +  L  +I++    L+    L     +   
Sbjct: 388 VRLTEIK--------IKRISKFDAFKADQHIRQLEEDIEQTQKNLNQ---LTKFTIRWFE 436

Query: 507 SVKDELD--TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +++ +     PR+T I         +  +  E + +                       +
Sbjct: 437 ALRKKYGAAYPRKTEISSFGSVNRAQVAVANETLYI---------------------DDE 475

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           G +G  ++  + V      ST   VL   + G
Sbjct: 476 GFAGYGVKKGNPV---CKCSTLDDVLIIDNAG 504


>gi|325268779|ref|ZP_08135405.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
 gi|324988884|gb|EGC20841.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
          Length = 903

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 150/677 (22%), Positives = 279/677 (41%), Gaps = 77/677 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V+ +           E    PDFPTG  I       + Y  G+   V++  + +E  
Sbjct: 210 DAAVSCLRGE--------EFHLYPDFPTGGSI-----DVSKYNDGQRGGVLKVRARVE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    +++ E I + V + ++       ++       + + L  G S
Sbjct: 255 KLDSKTLVIREVPFTKTASSLQESITKAVEKGKLKI--RKVEDMTASEVEIQLHLTPGTS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +L+  V   + ++ R  +   ++
Sbjct: 313 SDKTIDALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKRELEIRKHE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A  + +++  +D    
Sbjct: 373 LEEQL-----FYNSLERIFIEDRIYKERKFE------------TARSLDEVVAFVDSKLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D     +  +  EI E    L     ++ 
Sbjct: 416 PYKKTFVREVTRDDILRLLEIKMQRILKFNKDKADELIRKIKAEIAEIDKDLG---EMVR 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++     PRRT I      +  +     E +        Y+ R       
Sbjct: 473 VTIEWFTHLKEKYGKDHPRRTEIKNFDTIVAAKVVDANEKL--------YIDRQA----- 519

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                  G  G  ++  +FV +    S    V+ F   G     KV R+       +G  
Sbjct: 520 -------GFIGTGLKKAEFVQN---CSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVL 566

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + + ++    +     T     +   ++     +R       
Sbjct: 567 HVQVFKKNDKRTIYNVV-YRDGKTGPYYIKRFNVTSITRDKEYDVTLGTPGSRICYFTAN 625

Query: 678 LDSRDEILSVETCTQEN 694
            +   E++ +      +
Sbjct: 626 PNGEAELIKITLDPNPD 642


>gi|260748871|gb|ACX48752.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/197 (62%), Positives = 156/197 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFP 226
           DI ++ LME I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|23429763|gb|AAN23863.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + R+ QD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDSAVYDTIVRLVQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N ++ +D LM  I
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|262477434|gb|ACY68194.1| DNA gyrase subunit A [Escherichia coli]
          Length = 199

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 122/199 (61%), Positives = 157/199 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC++ ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLSYIDDEDI 180

Query: 212 DLDALMEIIRGPDFPTGAV 230
            ++ LME I GPDFPT A+
Sbjct: 181 SIEGLMEHIPGPDFPTAAI 199


>gi|323344338|ref|ZP_08084563.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
 gi|323094465|gb|EFZ37041.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
          Length = 905

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 144/588 (24%), Positives = 250/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+ + I  HNL ++ 
Sbjct: 152 --LDVVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLTSKILPHNLNDIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  ++ +   D  +         PDFPTG  I       + Y  G+    ++  + IE  
Sbjct: 210 DAAISYLKGEDFCI--------YPDFPTGGSI-----DVSKYNDGQRGGTLKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+      +++ I + + + +I   A   D++      + + L  G S
Sbjct: 255 KLDNKTLVIKEIPFSKTTTTLIDSILKAIDKGKI--KARKVDDNTAAEVEIQVHLAPGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V          T  LL K
Sbjct: 313 SDKTIDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHSVD--------STMGLLRK 364

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                   +   +  A+L+++    R   + +            A ++   +  ID    
Sbjct: 365 ELLIRMKELNEQLFFASLEKIFIEERIYKDKK---------FEEAKNMDAAVAHIDSRLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      ++E+++ R+    +D     +  +  EI    DI      +  
Sbjct: 416 PFKPTFIREITRDDILRLMEIKMQRILKFNKDKADELIAKILAEI---KDIKHDLDHMTE 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       +KD+     PR T I             +    VV  +   Y+ R       
Sbjct: 473 VTISWFQFIKDKYGKDHPRLTEI--------KNFDTIEATKVVEANEKLYINR------- 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++++ +    S    ++ F   G     +V  
Sbjct: 518 -----AEGFVGTGLKKDEYICN---CSDIDDIIIFYRDGKYKIIRVAD 557


>gi|38677890|emb|CAE30285.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 224

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 140/223 (62%), Positives = 179/223 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
             +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|218131890|ref|ZP_03460694.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
 gi|217986193|gb|EEC52532.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
          Length = 904

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 174/814 (21%), Positives = 312/814 (38%), Gaps = 89/814 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  +  I    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADTNDVNIKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  V  + N +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASVKYLHNEEFKL--------YPDFQTGGNI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R  + IE    D + +V+ EIPY    A++ + I +   + +I       ++    
Sbjct: 244 GGAVRVRAKIE--KVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIKIKK--VEDLTSG 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK  V    
Sbjct: 300 NVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +   N+  +  H      I +       RI +     +            A +
Sbjct: 360 ALLRQELEIRKNEILESLHFSSLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +++     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDERLTPYYPTFIREVTKEDILKLMEIKMARILKFNSDKAEELIARMKADIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +K++     PRRT +         +     E + +    
Sbjct: 463 IDRHLAN---IVEYTVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+ +    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFIAN---CSDLDDVIIFFRDGRYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     N+   N    I  ++ + + +   + +     T     R   ++ 
Sbjct: 556 --TDKKFVGKNILYANVFKKNDKRTIYNVV-YRDGKEGTHYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVF 716
               +R        +   E++ V             E D       G+     I   R  
Sbjct: 613 GTPDSRIVYFTANPNGEAEVIKVTLKPNPRIRRIIFEEDFSQINIKGRQAMGNIL-TRNP 671

Query: 717 AGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + ++  RG S   G +V     V  L+ D   +    +         L +G+      
Sbjct: 672 VHKIALKQRGGSTLGGRKVWFDQDVLRLNYDGRGEYLGEFQSDEQILVVLNNGEFYTSNF 731

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             N+   +     E+    K+    +    ++G+
Sbjct: 732 DVNNHYEDNIRVLEKYDPHKVWTAVLYDADQQGY 765


>gi|189502210|ref|YP_001957927.1| DNA topoisomerase IV subunit A [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497651|gb|ACE06198.1| hypothetical protein Aasi_0825 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 155/608 (25%), Positives = 255/608 (41%), Gaps = 78/608 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E II  +           I D  Q+ +L YA  VIL RA+P + DGLKPV RRIL  M
Sbjct: 1   MSEEIIPHNATIHDLT---PIGDMYQSWFLDYASYVILERAVPAIEDGLKPVQRRILHAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + +Y K A I G+ M  YHPHG+A+I +A+  + Q    + LLI+ QGN+G +
Sbjct: 58  KEMD---DGRYNKVANIIGQTMQ-YHPHGDASIAEAIINLGQ----KELLIDMQGNWGDI 109

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E R    AH +L         ++ +YDG  +EPV    ++P +L  G 
Sbjct: 110 RTGDSAAAARYIEARPSSLAHAIL--YSPQITSWQLSYDGRKKEPVTFPIKFPLLLAQGA 167

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG+AT I  HN  E+++G +AV+     +L         PDFPTG ++       +
Sbjct: 168 EGIAVGLATKILPHNFCELIEGAIAVLQGKTTNL--------LPDFPTGGLV-----DCS 214

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  G+    IR  + IE    D++ + + EIPY     +++E I       +I      
Sbjct: 215 AYNEGKRGGRIRLRARIEIL--DKKTLAIREIPYGTTTNSLIESIIRAYERGKIKIK--Q 270

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             ++  +   +++ L  G S DV+L+ LY +T  +   S N   +   KP    +  +L+
Sbjct: 271 VIDNTAEDVEILVHLAPGQSPDVVLDALYVFTDCEIGISPNTCVIKDEKPTFIGVNELLE 330

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RTK +L +     H  +   I  A+L+++    R   + E        
Sbjct: 331 YN--------TYRTKDILQQELTLQHKNLQEKILFASLEKLFIEKRIYRDIEE------- 375

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
               +   + ++  ID             + E     + E+++ R++           ++
Sbjct: 376 ----SETWEQVLLTIDQGLEPYKKQFYRAIIEDDLVRLTEIKIKRISKYDSQKAE---DA 428

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRED 537
           L +  KE  ++      L     Q   ++  +      R+T I             +   
Sbjct: 429 LLVLEKELAEVEHHLQHLTTFTIQYFKNLLKKYGAGKERKTEIR--------TFDTIEAH 480

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VV  +   Y+ R             +G  G  ++ ++ + D    S    V+ F   G 
Sbjct: 481 AVVANNQKLYINR------------KQGFIGYGLKKDELIGD---CSDLDDVIVFRKDGK 525

Query: 598 VYKEKVWR 605
               K+  
Sbjct: 526 CLVVKIAE 533


>gi|313192105|emb|CBX19912.1| gyrase A [Clostridium perfringens]
          Length = 263

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 144/264 (54%), Positives = 199/264 (75%), Gaps = 1/264 (0%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMA
Sbjct: 1   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G 
Sbjct: 61  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGR 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G
Sbjct: 121 IVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 179

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++
Sbjct: 180 MRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKD 239

Query: 368 VVVRRTKYLLNKARDRAHVLVGLA 391
           V+ RRT++ LNKA++RAH+L GL 
Sbjct: 240 VITRRTQFELNKAKERAHILEGLI 263


>gi|303236883|ref|ZP_07323462.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
 gi|302483051|gb|EFL46067.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
          Length = 990

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 167/773 (21%), Positives = 302/773 (39%), Gaps = 86/773 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I+G 
Sbjct: 105 LSGMYKNWFLDYASYVILERAVPHIDDGLKPVQRRILHSMKRMD---DGRYNKVANIAGH 161

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 162 TMQ-FHPHGDASICDALVQMGQ----KDLLIDTQGNWGNIFTGDRAAAPRYIESRLSKFA 216

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EPV L A++P +L  G  GIAVG+++ I  HN+ E+ 
Sbjct: 217 --LETVFNPKTTEWQLSYDGRNKEPVTLPAKFPLLLAQGAEGIAVGLSSKILPHNMVEIC 274

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +      L         PDFPTG  I         Y  G+    ++  + +E  
Sbjct: 275 DAAINYLKEKPFAL--------YPDFPTGGSI-----DVEKYNDGQRGGTLKVRAKVE-- 319

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    +++ E I + V + ++       ++       + + L  G S
Sbjct: 320 KIDNKTLVIREVPFTKTASSLAESITKAVEKGKLKI--RKVEDMTASEVEIQLHLTPGTS 377

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   ++  KP+  T+  +L+  V   +   + R +  + K
Sbjct: 378 SDKTMDALYAFTDCEVSISPNCCVISDNKPQFLTISDVLRHSVNHTQG--LLRRELEIRK 435

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A     +       +   + + +   F                 A  + D I  +D    
Sbjct: 436 AELEEQLFFSSLERIFIEERIYKERGFE---------------TAKTMDDAIKFVDGKLE 480

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               +    +       ++E+++ R+    +D     L ++  EI E    LS    ++ 
Sbjct: 481 PFKKNFIREVKREDILRLMEIKMQRILKFNKDKADELLKNIQAEIAEINKDLS---EMVR 537

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K +     PR+T I      +  +     E + +                 
Sbjct: 538 VTIEWFKHLKTKYGKDYPRKTEIKSFDTIVAAKVVDANEKLYI----------------- 580

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
              R G G  G  ++  +FV +    S    V+ F   G     KV  +       +G  
Sbjct: 581 --DRKG-GFIGTDLKKAEFVQN---CSNLDDVIVFYRDGKY---KVVHIADKVFVDKGVI 631

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++     + +    Y+        +R            S  +   
Sbjct: 632 HVQVFKRNDRRTIYNVVY---RDGAQGPYYIKRFNVVSVIRDKDYDLTQGTPSSRVLYFT 688

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            +   E  +V+   ++          + +R+              G +G+ L+K D V  
Sbjct: 689 ANPNGEAETVKVILKDQP-----GRARFMRYLERDF-SNVLIKGKGAKGVILSK-DVVER 741

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +++  H  +    R  +      +       T        D+ +    + E  
Sbjct: 742 VSLKAHGTSTLGGRKVWFDADVNRINYEEQGTLLGEFNDKDTILVVLDNGEFY 794


>gi|255010001|ref|ZP_05282127.1| DNA topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313147794|ref|ZP_07809987.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313136561|gb|EFR53921.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
          Length = 882

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 146/601 (24%), Positives = 254/601 (42%), Gaps = 74/601 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +   + I    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 17  PADSHNESIKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ + N +  L         PDF TG  I       + Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRNEEFKL--------YPDFQTGGSI-----DVSKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  S I     D + + +TEIPY     ++++ I + V + +I       D++   
Sbjct: 233 GGAVKIRSKI--NKVDNKTLAITEIPYGRTTTSVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+       
Sbjct: 289 NVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLRKSADNTL 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +   ++ ++  H      I +       +    S + + A   + +R      
Sbjct: 349 SLLRQELEIKKDELQESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTP--- 405

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                           S     +++     ++E+++ R+     D     +  +  +I E
Sbjct: 406 --------------FYSQFIREVTKEDILRLMEIKMGRILKFNSDKAEEAIARMNEDIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             + L++   ++    Q    +KD+     PRRT +             +    VV  + 
Sbjct: 452 INNHLAN---IVEYTIQWYRMLKDKYGKNFPRRTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV      S    V+ F   G      V 
Sbjct: 501 KLYINR------------EEGFIGTSLKKDEFVA---CCSDIDDVIIFYRDGRYMVTPVA 545

Query: 605 R 605
            
Sbjct: 546 D 546


>gi|38677888|emb|CAE30284.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 222

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 140/222 (63%), Positives = 178/222 (80%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  
Sbjct: 1   IGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG
Sbjct: 61  ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 120

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS 
Sbjct: 121 VLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSS 180

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 222


>gi|23429751|gb|AAN23862.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSPGIAVGMATNIPPHNLTEIVNGCRALI 180

Query: 207 DNPDIDLDALMEII 220
           +N ++ +D LM  I
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|118132713|gb|ABK60209.1| DNA gyrase A [Shigella boydii]
          Length = 198

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 121/198 (61%), Positives = 157/198 (79%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKY
Sbjct: 1   KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 60

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ D
Sbjct: 61  HPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 120

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 180

Query: 206 IDNPDIDLDALMEIIRGP 223
           ID+ DI ++ LME I GP
Sbjct: 181 IDDEDISIEGLMEHIPGP 198


>gi|144954320|gb|ABP04236.1| gyrase alpha subunit [Yersinia pseudotuberculosis]
          Length = 188

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 122/186 (65%), Positives = 150/186 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLS 180

Query: 197 EVVDGC 202
           EV+DGC
Sbjct: 181 EVIDGC 186


>gi|260062970|ref|YP_003196050.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
 gi|88784538|gb|EAR15708.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
          Length = 907

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 260/606 (42%), Gaps = 73/606 (12%)

Query: 1   MTEHIISSDEEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E+   +D  +++        +T   ++ +L YA  VIL RA+P + DG KPV RRI  
Sbjct: 1   MEENAPPNDPNQQEAEQEALTRVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI-- 58

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +    + +Y K A + G+ M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G
Sbjct: 59  -MHALKEMDDGRYNKVANVVGQTMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++  GD  AA RY E RL K A  L         +++ +YDG  +EPV L  ++P +L  
Sbjct: 113 NILTGDGAAASRYIEARLSKFA--LEVVFSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVG++T I  HN  E++D  +  +      L         PDFPT  +I      
Sbjct: 171 GAEGIAVGLSTKILPHNFIELIDASIKHLQGKRFKL--------YPDFPTAGII-----D 217

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  G     +R  + I     D+  +V++EIPY  N +++++ I +   + +I    
Sbjct: 218 IGNYNDGERGGKVRVRARI--AQQDKNTLVISEIPYGTNTSSLIDSILKANDKGKIK--I 273

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              +++      +++ L  G S D  ++ LY +T+ ++  S     +   KP    +  +
Sbjct: 274 KKIEDNTAAEVEILVHLPSGISPDKTIDALYAFTACETSISPLGCIIEDNKPVFMGVSEM 333

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+       E++    + LL + +++ H      I + N     RI R     ET     
Sbjct: 334 LRRSTDHTVELLQAELEILLGELQEQWHAASLERIFIEN-----RIYRDIEEEETW---- 384

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     + +I  I              ++E     + E+R+ R++    D  +  L
Sbjct: 385 ----------EGVIAAIGKGLKPHTGHLRREVTEEDIVRLTEIRIKRISRFDLDKAQEHL 434

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           ++L   I E    L+    L          +K      R     E   ++   D I    
Sbjct: 435 DNLEKRIAETKHHLAH---LTDYAIDYFRELKKNFGAGR-----ERKSEIRVFDEIEATK 486

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V+  + L YV R             +G  G  +R +++VTD    S    ++ F+  G 
Sbjct: 487 VVIRNTKL-YVNR------------EEGFIGTSLRKDEYVTD---CSDIDDIIVFTKSGQ 530

Query: 598 VYKEKV 603
           +   +V
Sbjct: 531 MMITRV 536


>gi|270295502|ref|ZP_06201703.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274749|gb|EFA20610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 893

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 155/685 (22%), Positives = 274/685 (40%), Gaps = 78/685 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             + ++  I    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADAKDANIKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ + N +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASISYLHNEEFKL--------YPDFQTGGSI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  S IE    D + + + EIPY    A++ + I +   + +I       ++    
Sbjct: 244 GGAIRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGKIKI--RKVEDLTSG 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+  V    
Sbjct: 300 SVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +    +  +  H      I +       RI +     +            A +
Sbjct: 360 ALLRQELEIRKGEILESLHFASLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +++     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDERLTPYYPTFIREVTKEDILRLMEIKMARILKFNSDKAEELIARMRKDIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +KD+     PRRT +         +     E + +    
Sbjct: 463 IDCHLAN---IVEYTVDWFRMLKDKYGKAFPRRTELRNFDTIEATKVIEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+ +    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFIGN---CSPIDDVIIFFRDGKYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     NI   N    I  +  + + +   + +     T     R   ++ 
Sbjct: 556 --ADKKFVGKNILYANIFKKNDKRTIYNV-CYRDGKEGTSYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET 689
               +R        +   EI+ V  
Sbjct: 613 GTPDSRITYFTANPNGEAEIIKVTL 637


>gi|225012789|ref|ZP_03703223.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
 gi|225003063|gb|EEG41039.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
          Length = 865

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 262/606 (43%), Gaps = 75/606 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E    +  E+    + V +T   ++ +L YA  VIL RA+P + DGLKPV RRIL  M
Sbjct: 1   MDEITDQTFPEDASNDSLVKVTGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRILHSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 61  KDLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQVGQ----KELLIDMQGNWGNI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  L         D++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 LTGDSAAASRYIEARLSKFA--LEVVFSPKVTDWQLSYDGRKKEPIHLPVKFPLLLAQGA 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E++   +  +    ID+         PDF TG VI        
Sbjct: 171 EGIAVGLSTKILPHNFNELLQASIQHLKGKKIDV--------YPDFQTGGVI-----DVQ 217

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  T  D+  +V+ EIP+  N +++++ I +   + +I      
Sbjct: 218 NYNEGLRGGKVRVRAKI--TQQDKNTLVINEIPFSTNTSSLIDSILKANEKGKIK--IKK 273

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      +++ L    S D +++ LY +T+ ++  S     +   KP    +  +LK
Sbjct: 274 IEDNTASEVEILVHLPNDISPDKMIDALYAFTACETSISPLGCLIIDNKPHFMGVNEMLK 333

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                  +++       L +  ++ H         A+L+ +    +   + E A      
Sbjct: 334 ISTDHTVQLLKLELDVQLLELENQWH--------YASLERIFIENKIYRDIEEA------ 379

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S  +++I  ID             + E     + E+R+ R++    D  + ++ +
Sbjct: 380 -----STWEEVIAFIDKGLKPHIEHLKRAVVEEDIVRLTEIRIKRISKFDLDKAQQKIEA 434

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRED 537
           L  +I E  + L+    L+    +    ++    T   R++ I             V   
Sbjct: 435 LEGDIAEVKNNLAH---LIDYAIRYFKHLRKTYGTDKERKSEIR--------IFDDVDAK 483

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VV  +   Y+ R             +G  G  +R ++FV D    S    ++ F+  G 
Sbjct: 484 KVVVRNQRLYMNR------------EEGFIGTSLRKDEFVCD---CSDIDDIIVFTQEGK 528

Query: 598 VYKEKV 603
           +   KV
Sbjct: 529 MQVVKV 534


>gi|257362178|gb|ACV53179.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|288803215|ref|ZP_06408649.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
 gi|288334256|gb|EFC72697.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
          Length = 908

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 149/677 (22%), Positives = 281/677 (41%), Gaps = 77/677 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  ++ +   + +L         PDFPTG  I       + Y  G+   V++  + +E  
Sbjct: 210 DAAISYLRGEEFNL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRAKVE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+      + E I + V + ++       ++       + + L  G S
Sbjct: 255 KLDNKTLVIREVPFTKTANTLQESITKAVEKGKLKI--RRVEDMTASEVEIQLHLTPGTS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KPE  T+  +L+      + ++    +   ++
Sbjct: 313 SDKTIDALYAFTDCEINISPNCCVIRDNKPEFLTISDVLRNSAEHTKALLKLELEIRKHE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A DI +++  +D    
Sbjct: 373 LEEQL-----FYNSLERIFIEDRIYKERKFE------------TAKDIDEVVAFVDSKLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D     +  +  EI E    L+    ++ 
Sbjct: 416 PYKKTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLN---EMVR 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++     PRRT I      +  +     E +        Y+ R       
Sbjct: 473 VTIEWFTHLKEKYGGDHPRRTEIKSFDTIVAAKVVDANEKL--------YIDRQ------ 518

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++  +FV +    S    V+ F   G     KV R+       +G  
Sbjct: 519 ------EGFIGTGLKKAEFVQN---CSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVL 566

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + + ++    +     T     +   ++     ++       
Sbjct: 567 HVQVFKKNDKRTIYNVV-YRDGKTGPYYIKRFNVTSITRDKEYDVTLGTPGSKINYFTAN 625

Query: 678 LDSRDEILSVETCTQEN 694
            +   E++ +      +
Sbjct: 626 PNGEAELIKITLDPNPD 642


>gi|189464414|ref|ZP_03013199.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
 gi|189438204|gb|EDV07189.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
          Length = 892

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 163/726 (22%), Positives = 287/726 (39%), Gaps = 86/726 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ 
Sbjct: 152 --LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +   +  L         PDF TG  I       + Y  G     +R  + IE  
Sbjct: 210 DASIRYLHEEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVRVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + + + EIPY    A + + I +   + +I       ++       +++ L  G S
Sbjct: 255 KIDNKTLAIKEIPYGKTVANVCDSIVKASEKGKIKIKK--VEDLTSGNVEILVHLAPGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   ++  KP   T+  +L+  V     ++ +  +   ++
Sbjct: 313 SDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTLSLLRQELEIRKDE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +  H      I +       RI +     +            A D+      ID+   
Sbjct: 373 ILESLHFASLEKIFIEE-----RIYKDKEFEQ------------AKDMDAACAHIDERLT 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +++     ++E+++ R+     D     +  +  +I+E   I    + ++ 
Sbjct: 416 PYYPRFIREVTKEDILKLMEIKMGRILKFNSDKAEELIARMKADIEE---IDHHLANIVE 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                 L +K++     PRRT +             +    VV  +   Y+ R       
Sbjct: 473 YTVDWYLMLKNKYGKNFPRRTELR--------NFDTIEASKVVEANEKLYINR------- 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++ ++F   L   S+   V+ F   G      V          +   
Sbjct: 518 -----EEGFIGTGLKKDEF---LCNCSSLDDVIIFFRDGRYLVTPV---SDKKFVGKNIL 566

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             N+   N    I  ++ + + +     +     T     R   ++     +R       
Sbjct: 567 YANVFKKNDKRTIYNVV-YRDGKEGTQYIKRFAVTSIIRDREYDVTQGTPDSRITYFTAN 625

Query: 678 LDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +   E++ V             E D    +  G+  R  I   ++   + ++  RG S 
Sbjct: 626 PNGEAEVIKVTLKPNPRVRRIIFEEDFSDISIKGRQARGNIL-TKLPVHKIALKQRGGST 684

Query: 730 AKGDQV 735
             G +V
Sbjct: 685 LGGRKV 690


>gi|300726639|ref|ZP_07060075.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299776077|gb|EFI72651.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 912

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 147/588 (25%), Positives = 255/588 (43%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A + G 
Sbjct: 50  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANVVGH 106

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 107 TMQ-FHPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 161

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HN  E+ 
Sbjct: 162 --LETVFNPKTTEWQFSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKVLPHNFIEIC 219

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +A +   D  L         PDFPTG  I       + Y  G+   V++  + IE  
Sbjct: 220 NAAIAYLKGEDFHL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRAKIE-- 264

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + + V EIP+  N + ++E I + V + +I   A   +++      ++I L  G S
Sbjct: 265 KVDNKTLAVREIPFSKNTSTLIESITKAVEKGKI--KARKIEDNTSAQAEILIHLAPGVS 322

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +L+            RT  LL +
Sbjct: 323 SDKTMDALYAFTDCEINISPNCCVIEDQKPCFLTVSDVLRHSAD--------RTMGLLRQ 374

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                   +   +   +L+ +    R     +  + +         +  +++  ID    
Sbjct: 375 ELLIRKHELEEQLFFNSLERIFIEERIYKERKFEQAK---------NQDEVVAFIDSKLE 425

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D     +  +  EI E    L++   ++G
Sbjct: 426 PFKPSFIREVTREDIVRLLEIKMQRILKYNKDKADELIAKIKAEIAEIEKDLAN---MVG 482

Query: 500 IIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       ++++      R T I             +    VV  +   Y+ R       
Sbjct: 483 VTINWFEYLRNKYGEGHERLTEIRNFE--------NIEVTKVVEANQKLYINRQ------ 528

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++FV +    S    ++ F   G     KV  
Sbjct: 529 ------EGFVGTGLKKDEFVCN---CSDLDDIIIFYKDGKFKVIKVAD 567


>gi|302345857|ref|YP_003814210.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149088|gb|ADK95350.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 908

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 150/677 (22%), Positives = 282/677 (41%), Gaps = 77/677 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  ++ +   + +L         PDFPTG  I       + Y  G+   V++  + +E  
Sbjct: 210 DAAISYLRGEEFNL--------YPDFPTGGSI-----DVSKYNDGQRGGVLKVRAKVE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+      + E I + V + ++       ++       + + L  G S
Sbjct: 255 KLDNKTLVIREVPFTKTANTLQESITKAVEKGKLKI--RRVEDMTASEVEIQLHLTPGTS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KPE  T+  +L+      + ++    +   ++
Sbjct: 313 SDKTIDALYAFTDCEINISPNCCVIRDNKPEFLTVSDVLRNSAEHTKALLKLELEIRKHE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A DI +++  +D    
Sbjct: 373 LEEQL-----FYNSLERIFIEDRIYKERKFE------------TAKDIDEVVSFVDSKLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D     +  +  EI E    LS    ++ 
Sbjct: 416 PYKKTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLS---EMVR 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++  +  PRRT I      +  +     E +        Y+ R       
Sbjct: 473 VTIEWFTHLKEKYGSDHPRRTEIKSFDTIVAAKVVDANEKL--------YIDRQ------ 518

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++  +FV +    S    V+ F   G     KV R+       +G  
Sbjct: 519 ------EGFIGTGLKKAEFVQN---CSDLDDVIIFYRDGKY---KVIRIADKVFVGKGVL 566

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            + +   N    I  ++ + + ++    +     T     +   ++     ++       
Sbjct: 567 HVQVFKKNDKRTIYNVV-YRDGKTGPYYIKRFNVTSITRDKEYDVTLGTPGSKINYFTAN 625

Query: 678 LDSRDEILSVETCTQEN 694
            +   E++ +      +
Sbjct: 626 PNGEAELIKITLDPNPD 642


>gi|257362184|gb|ACV53181.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|300772555|ref|ZP_07082425.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760858|gb|EFK57684.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 907

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 167/688 (24%), Positives = 292/688 (42%), Gaps = 83/688 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           + +E E+   ++ IT   +N +L YA  VIL RA+P + DG KPV RRIL  + +M    
Sbjct: 16  TPQENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKEMD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    GD  A
Sbjct: 73  DGRYNKVANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTTGDSAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L      +T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEGRLSKFA--LEVTFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT I  HN  E++DG + V++    ++         PDF TG +        +AY  G+ 
Sbjct: 186 ATKIMPHNFNELIDGSIQVLNGERPNI--------LPDFLTGGM-----ADCSAYNEGQR 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  + IE    D++ + +TEIP+      ++E +       +        +++  +
Sbjct: 233 GGKIRVRAKIE--ERDKKTLAITEIPFGTTTGGLIESVVA--ANDKGKIKIKKIEDNTAE 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S DV ++ LY +T+ +   S N   +   +P   ++  +L        
Sbjct: 289 NVEIIVHLAPGISPDVTIDALYAFTACEVSISPNTCVIKNDRPHFMSVNDVLIEN----- 343

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
               + TK LL +  +     +   I  + L ++        +P+           N+ D
Sbjct: 344 ---TKNTKNLLKQELEIKLHDLHEKIFFSTLLKIFIQEGMYKHPD---------YENSGD 391

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              ++ ++++            +     + +++  ++ +T         ++ +L  EIK 
Sbjct: 392 FDTVVQVLNELFTPFFELFYRPIEPEDYKRLIDKPMSSITRFDVKKADEQMAALEEEIKT 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L    +L          ++D+      RRT +             V    V   + 
Sbjct: 452 VKRNL---RQLTEYAIAWFERLRDKYGKGRERRTELRA--------FDKVEATQVALANA 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             YV R             +G  G  M+ ++FV+D    S    ++ F   G      V 
Sbjct: 501 KLYVNR------------EEGFIGTGMKKDEFVSD---CSDIDDIIVFRGDGKY---VVT 542

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++        GK +I++    +G+   TI      E      YV      G V R+K  D
Sbjct: 543 KIQDKVF--VGKDIIHVAVFKKGDE-RTIYNAVYKEGGTGTSYVKRFAVVG-VTRDKEYD 598

Query: 665 FIQINRSGKI---AMKLDSRDEILSVET 689
             + ++  KI       +   E+++V+ 
Sbjct: 599 VSKGSKGSKILYFTANPNGEAEVINVQL 626


>gi|114224641|gb|ABI55205.1| DNA gyrase A [Shigella sonnei]
          Length = 200

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/197 (61%), Positives = 156/197 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFP 226
           DI ++ LME I GPDFP
Sbjct: 181 DISIEGLMEHIPGPDFP 197


>gi|160891364|ref|ZP_02072367.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
 gi|156858771|gb|EDO52202.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
          Length = 893

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 155/685 (22%), Positives = 274/685 (40%), Gaps = 78/685 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             + ++  I    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADAKDANIKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ + N +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASISYLHNEEFKL--------YPDFQTGGSI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  S IE    D + + + EIPY    A++ + I +   + +I       ++    
Sbjct: 244 GGAIRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGKIKI--RKVEDLTSG 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+  V    
Sbjct: 300 SVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +    +  +  H      I +       RI +     +            A +
Sbjct: 360 ALLRQELEIRKGEILESLHFASLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +++     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDERLTPYYPTFIREVTKEDILRLMEIKMARILKFNSDKAEELIARMRKDIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +KD+     PRRT +         +     E + +    
Sbjct: 463 IDCHLAN---IVEYTVDWFRMLKDKYGKAFPRRTELRNFDTIEATKVIEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+ +    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFIGN---CSPIDDVIIFFRDGKYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     NI   N    I  +  + + +   + +     T     R   ++ 
Sbjct: 556 --ADKKFVGKNILYANIFKKNDKRTIYNV-CYRDGKEGTSYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET 689
               +R        +   EI+ V  
Sbjct: 613 GTPDSRITYFTANPNGEAEIIKVTL 637


>gi|257362181|gb|ACV53180.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 149/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|114224639|gb|ABI55204.1| DNA gyrase A [Shigella flexneri]
          Length = 196

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 155/196 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDF 225
           DI ++ LME I GPDF
Sbjct: 181 DISIEGLMEHIPGPDF 196


>gi|14994223|gb|AAK73347.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/194 (61%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D+ +D LM  I
Sbjct: 181 ENGDLTIDELMTYI 194


>gi|3548918|gb|AAC68575.1| DNA gyrase A [Providencia stuartii]
          Length = 196

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/196 (62%), Positives = 158/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  IVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRMA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNLG
Sbjct: 121 KIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNLG 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV+ GC+A ID+ DI 
Sbjct: 181 EVISGCLAYIDDEDIS 196


>gi|313192095|emb|CBX19907.1| gyrase A [Clostridium perfringens]
          Length = 266

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 143/265 (53%), Positives = 198/265 (74%), Gaps = 1/265 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
              E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 1   DIQEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 120

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 121 VVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 179

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 180 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 239

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIA 393
           + RRT++ LNKA++RAH+L GL IA
Sbjct: 240 ITRRTQFELNKAKERAHILEGLIIA 264


>gi|257362203|gb|ACV53187.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|260910051|ref|ZP_05916733.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635819|gb|EEX53827.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 913

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 146/588 (24%), Positives = 253/588 (43%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P++ DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 52  LSGMYQNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 108

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 109 TMQ-FHPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 163

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T  ++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN+ E+ 
Sbjct: 164 --LDTVFNPKTTQWQASYDGRNKEPISLPVKFPLLLAQGAEGIAVGLSSKILPHNMRELC 221

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +  +      L         PDFPTG  I       + Y  G+    I+  + IE  
Sbjct: 222 EAAIHYLKGEPFRL--------YPDFPTGGSI-----DASRYNDGQRGGSIKVRAKIE-- 266

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+  N   +++ I + V + +I   A   D++      + + L  G S
Sbjct: 267 KLDSKTLVIREIPFSKNTTTLIDSILKAVDKGKI--KAKRVDDNTAAEVEIQVHLAPGVS 324

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V     ++    +   ++
Sbjct: 325 SDKTIDALYAFSDCEINISPNCCVIEDNKPRFLTVSEVLRHNVDSTMGLLRLELQIRKDE 384

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++           ++L+++    R   + +           NA ++   ++ ID+   
Sbjct: 385 LLEQL--------FFSSLEKIFIEERIYKDKK---------FENAENMDAAVEHIDNRLE 427

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    L       ++E+++ R+    +D     L  +  EI     I    + +  
Sbjct: 428 PFKPDFIRELRRDDIMRLMEIKMQRILKFSKDKADELLARIKEEIA---GIDHDLAHMTD 484

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    + ++     PR T I         +     E + +                 
Sbjct: 485 VTIKWFKFLIEKYGKDHPRLTEIKSFETIEATKVVEANEKLYI----------------- 527

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             RR  +G  G  ++ ++FV +    S    +L F   G     +V  
Sbjct: 528 -NRR--EGFIGTGLKKDEFVCN---CSDIDDILVFHRDGKYKVMRVAD 569


>gi|257362196|gb|ACV53185.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|89891249|ref|ZP_01202756.1| topoisomerase IV, subunit A [Flavobacteria bacterium BBFL7]
 gi|89516561|gb|EAS19221.1| topoisomerase IV,  subunit  A [Flavobacteria bacterium BBFL7]
          Length = 894

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 150/611 (24%), Positives = 263/611 (43%), Gaps = 80/611 (13%)

Query: 1   MTEHIISSDEEEEKGITS-----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M+E     +   +  I         IT   +  +L YA  VIL RA+P + DG KPV RR
Sbjct: 1   MSEENEELESINDGEIQEPTESITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I+  M  +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + +LI+ QG
Sbjct: 61  IMQSMKDLD---DGRYNKVANIVGHAMQ-YHPHGDASISDAMVQIGQ----KDMLIDMQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GDP AA RY E RL K A  +L        +++ +YDG  +EPV L  ++P +
Sbjct: 113 NWGNIFTGDPAAASRYIEARLSKFALEIL--FNPKITEWQSSYDGRRKEPVNLPVKFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T +  HN  E++D  +  +      +         PDFPTG  I   
Sbjct: 171 LAQGAEGIAVGLSTKVLPHNFIELIDASIKHLQGKRFTI--------YPDFPTGGEI--- 219

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
                 Y  G     +R  +     + D+  I++TEIPY  N +++++ I +   + +I 
Sbjct: 220 --DVTNYNDGLRGGKVRVRAK--MHAPDKNTIIITEIPYSTNTSSLIDSILKANEKGKIK 275

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      ++I L  G S D  ++ LY +T+ +S  S     +   KP    +
Sbjct: 276 --IKKIEDNTAADVEIMIHLHSGISPDKTMDALYAFTNCESSISPLGCVIEDNKPLFVGV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       +++ +  +  L++  ++ H      I + N     RI R         
Sbjct: 334 TEMLRRSADHTVDLLKQELEIQLDEVEEQWHFASLERIFIEN-----RIYRDIEE----- 383

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
               + +W+         L     +   +     ++      + E+R+ R++    D  +
Sbjct: 384 ----EETWDGVIAAIDKGLKPHIGHLKRAITVDDITR-----LTEIRIKRISKFDIDKAQ 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDC 532
            ++++L   I +    L     L+        S+K        R+T I       +  D 
Sbjct: 435 QKIDALEERIAQLKHHL---EHLIEYAIDYFKSLKKNYGEGRERKTEI-------KTFDD 484

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           IV   +V+  + L YV R             +G  G  ++ +++VTD   +     ++ F
Sbjct: 485 IVATKVVMRNTKL-YVNR------------AEGFVGTALKRDEYVTDCADI---DDIIVF 528

Query: 593 SSLGFVYKEKV 603
           +  G +   KV
Sbjct: 529 TKDGTMMVTKV 539


>gi|255533353|ref|YP_003093725.1| DNA topoisomerase IV subunit A [Pedobacter heparinus DSM 2366]
 gi|255346337|gb|ACU05663.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter heparinus DSM 2366]
          Length = 977

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 212/934 (22%), Positives = 363/934 (38%), Gaps = 133/934 (14%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +N +L YA  VIL RA+P + DGLKPV RRI   M  +    + ++ K A + 
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRI---MHSLKEMDDGRFNKAANVI 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  AA RY E RL K
Sbjct: 75  GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARLSK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ ++     DT  ++ +YDG   EPV L  ++P +L  G  GIAVG+AT +  HN  E
Sbjct: 130 FANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +  +     ++         PDF TG +        +AY  G     IR  + I 
Sbjct: 188 LLDASIEALQGHRPNI--------LPDFFTGGM-----ADFSAYNEGMRGGRIRVRAKI- 233

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  D++ +V+TEIPY     ++++ I       +        +++      +VI+L  G
Sbjct: 234 -TEKDKKTLVITEIPYSTTTGSVIDSILS--ANDKGKIKIKKIEDNTAAHVEIVIQLAPG 290

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            S DV ++ LY +TS +   S N   +   KP+  ++  IL              TK LL
Sbjct: 291 ISPDVTIDALYAFTSCEVSISPNTCIIKDEKPQFLSVNDILIENSMH--------TKALL 342

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            K  +     +   I  ++L ++        N E           N+ + + ++++++  
Sbjct: 343 KKELEIKLHELQEKIFFSSLLKIFIQEGMYKNAE---------YENSVNFEMVVEVLNRL 393

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      +     + +++  ++ +T         ++ +L  EIK   + L     L
Sbjct: 394 FEPFKPGLYREILPEDFKKLIDKPMSSITRFDVKKADEQMKALSDEIKVVKNHLRH---L 450

Query: 498 LGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
                     +KD+      R+T I             V    V   +   Y+ R     
Sbjct: 451 TEYAIAWFQKLKDKYGKGRERKTEIR--------LFDRVEASKVALANVKLYMNRED--- 499

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
                    G  G  +R ++FV D    S    ++ F   G     KV           G
Sbjct: 500 ---------GFIGTGLRKDEFVAD---CSDIDELIVFREDGKCIITKV-----ADKTFVG 542

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI- 674
           K +++     +G+  T      +D +S  +    FA     V R+K  D  + ++  K+ 
Sbjct: 543 KGILHAQVFKKGDERTIYNMIYKDGASGVSYIKRFAVVG--VTRDKEYDLTKGSKGSKVL 600

Query: 675 --AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG-------VR 725
                 +   EI++V+           +KL +       A     GR S G       V+
Sbjct: 601 YFTANPNGEAEIVTVQLKPH-------SKLKKLQFDLDFAEIAIKGRGSQGNIVSKYPVK 653

Query: 726 GISLA-KGDQVISMAIVLHAD----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            I L  KG   +S   + + D     + D R  Y+     + +++    +    L     
Sbjct: 654 KILLKSKGVSTLSGLKIWYDDLLRRLNVDGRGKYLGEFDGEDKILQVHKDGWYELSTFEL 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINE-- 837
                ++    +    E+    V  +G  K      F     + GK +        ++  
Sbjct: 714 SNHFDADLILIQKFDPEKPFAVVQYEGKAKNYFIKRFLFEAIAVGKKVSLISEENGSKFL 773

Query: 838 -----------IGALVAVFPVNDNDQIIL--------VSDKGTLIRVPVNEIR--IASRA 876
                      +  L     V +  +I+L        +   G   R+  +E++    S  
Sbjct: 774 YLSSNPAAVLTVDVLKGKTQVPETLEIVLAEFIDVKGIKANGN--RLTAHEVKNITISNH 831

Query: 877 TKGVVIFSTAKDERVVSVERIRESE-IVDEAEST 909
           T+       A++ +VVSV    E E   DEA +T
Sbjct: 832 TE----IEPAEEVKVVSVANEAEDEFQEDEAAAT 861


>gi|257362187|gb|ACV53182.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 118/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+ KYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVISKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362199|gb|ACV53186.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|213618739|ref|ZP_03372565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 199

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 119/194 (61%), Positives = 156/194 (80%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVID 207
           NL EV++GC+A ID
Sbjct: 186 NLTEVINGCLAYID 199


>gi|167764214|ref|ZP_02436341.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
 gi|167698330|gb|EDS14909.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
          Length = 904

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 175/814 (21%), Positives = 312/814 (38%), Gaps = 89/814 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  +  +    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADTNDANVKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  V  +   +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASVKYLHKEEFKL--------YPDFQTGGNI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R  + IE    D + +V+ EIPY    A++ + I +   + +I       ++    
Sbjct: 244 GGAVRVRAKIE--KVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIKIKK--VEDLTSG 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK  V    
Sbjct: 300 SVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ R  +   N+  +  H      I +       RI +     +            A +
Sbjct: 360 ALLRRELEIRRNEILESLHFSSLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +S+     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDERLTPYYPTFIREVSKEDILKLMEIKMARILKFNSDKAEELIARMKADIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +K++     PRRT +         +     E + +    
Sbjct: 463 IDRHLAN---IVEYTVDWFRMLKEKYGKAFPRRTELRNFDTIDSTKVVEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+ +    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFIAN---CSDLDDVIIFFRDGRYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     N+   N    I  ++ + + +   + +     T     R   ++ 
Sbjct: 556 --ADKKFVGKNILYANVFKKNDKRTIYNVV-YRDGKEGTHYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVF 716
               +R        +   EI+ V             E D       G+     I   R  
Sbjct: 613 GTPDSRIVYFTANPNGEAEIIKVTLKPNPRIRRIIFEEDFSQINIKGRQAMGNIL-TRNP 671

Query: 717 AGRNSVGVRGISLAKGDQVISMAIV--LHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + ++  RG S   G +V     V  L+ D+  +    +         L +G+      
Sbjct: 672 VHKIALKQRGGSTLGGRKVWFDQDVLRLNYDSRGEYLGEFQSDEQILIVLNNGEFYTSNF 731

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             N+   +     E+    K+    +    ++G+
Sbjct: 732 DVNNHYEDNIRVLEKYDPNKVWTAVLYDADQQGY 765


>gi|326336678|ref|ZP_08202846.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691148|gb|EGD33119.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 868

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 143/607 (23%), Positives = 258/607 (42%), Gaps = 76/607 (12%)

Query: 3   EHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           E  +SS+  +     +++ I+   +  +L YA  VIL RA+P L DG KPV RRI+  M 
Sbjct: 8   EQNLSSETPQGDSQETITRISGMYETWFLDYASYVILERAVPALEDGFKPVQRRIMHSMD 67

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
           ++    + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG++G++ 
Sbjct: 68  ELE---DGRYNKVANIVGNTM-KYHPHGDASIGDAIIQLGQ----KQLLIDTQGSWGNIL 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         +++ +YDG   EPV L  ++P +L  G  
Sbjct: 120 TGDDAAAPRYIEARLSKFA--LDVLFSPKVTEWQKSYDGRNDEPVHLPVKFPLLLAQGAE 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++T I  HN  E++D  V  ++    +L         PDFPT  ++         
Sbjct: 178 GIAVGLSTKILPHNFNELIDASVLYLEGKPFEL--------YPDFPTAGIM-----DAAT 224

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     IR  + I     D+  +V+TEIP+    +++++ I +   + +I  +    
Sbjct: 225 YNDGMRGGRIRVRARI--AQRDKATLVITEIPFGTTTSSLIDSILKANEKGKIKILK--V 280

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++  +   +++ L +G S D  ++ LY +T  +   S     +   KP    +  IL+ 
Sbjct: 281 DDNTAKDVEILVHLPKGISPDKTIDALYAFTDCELSISPLCCVIEDNKPHFIGVSDILRK 340

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                 E++ +  +  L+    + H                     S      R E+   
Sbjct: 341 STDRTVEILKKELEVKLDDLEQKWH-------------------NASLEKIFIREEMYID 381

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               +D + L   + +            +++     + ++ + R+T          L  +
Sbjct: 382 FKKYNDKESLFAYLYERFEPFKEQLLRPITDEDIDRLTQIPMIRITRYDTYKAEENLLKI 441

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDM 538
             +I+   + L++   L+        +++ +      R+T+I             +    
Sbjct: 442 EADIEVVKNHLAN---LISFTIDYFRNLQKKYGKGKERKTQIRP--------FDTIEATK 490

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VV  +   YV R             +G  G  ++ +++V D    S    ++ F++ G +
Sbjct: 491 VVVRNLKLYVNR------------EEGFVGTSLKKDEYVAD---CSDIDDIIVFTADGKM 535

Query: 599 YKEKVWR 605
              KV  
Sbjct: 536 IITKVTE 542


>gi|227537923|ref|ZP_03967972.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242225|gb|EEI92240.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 907

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 167/688 (24%), Positives = 291/688 (42%), Gaps = 83/688 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           + +E E+   ++ IT   +N +L YA  VIL RA+P + DG KPV RRIL  + +M    
Sbjct: 16  TPQENEQTSNTIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKEMD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    GD  A
Sbjct: 73  DGRYNKAANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTTGDSAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L      +T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEGRLSKFA--LEVAFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT I  HN  E++DG + V++    ++         PDF TG +        +AY  G  
Sbjct: 186 ATKIMPHNFNELIDGSIQVLNGERPNI--------LPDFLTGGM-----ADCSAYNEGMR 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  + IE    D++ + +TEIP+      ++E +       +        +++  +
Sbjct: 233 GGKIRVRAKIE--ERDKKTLAITEIPFGTTTGGLIESVVA--ANDKGKIKIKKIEDNTAE 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S DV ++ LY +T+ +   S N   +   +P   ++  +L        
Sbjct: 289 NVEIIVHLAPGISPDVTIDALYAFTACEVSISPNTCVIKNDRPHFMSVNDVLIEN----- 343

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
               + TK LL +  +     +   I  + L ++        +P+           N+ D
Sbjct: 344 ---TKNTKNLLKQELEIKLHDLHEKIFFSTLLKIFIQEGMYKHPD---------YENSGD 391

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              ++ ++++            +     + +++  ++ +T         ++ +L  EIK 
Sbjct: 392 FDTVVQVLNELFTPFFELFYRPIEPEDYKRLIDKPMSSITRFDVKKADEQMAALEEEIKN 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L    +L          ++D+      RRT +             V    V   + 
Sbjct: 452 VKRNL---RQLTEYAIAWFERLRDKYGKGRERRTELRA--------FDKVEATQVALANA 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             YV R             +G  G  M+ ++FV+D    S    ++ F   G      V 
Sbjct: 501 KLYVNR------------EEGFIGTGMKKDEFVSD---CSDIDDIIVFRGDGKY---VVT 542

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++        GK +I++    +G+   TI      E      YV      G V R+K  D
Sbjct: 543 KIQDKVF--VGKDIIHVAVFKKGDE-RTIYNAVYKEGGTGTSYVKRFAVVG-VTRDKEYD 598

Query: 665 FIQINRSGKI---AMKLDSRDEILSVET 689
             + ++  KI       +   E+++V+ 
Sbjct: 599 VSKGSKGSKILYFTANPNGEAEVINVQL 626


>gi|224458690|gb|ACN43208.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458694|gb|ACN43210.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 135/298 (45%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S 
Sbjct: 123 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 274


>gi|325954945|ref|YP_004238605.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437563|gb|ADX68027.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 847

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 157/596 (26%), Positives = 258/596 (43%), Gaps = 77/596 (12%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + I  +S     Q  +L YA  VIL RAIP + DGLKPV RRIL  M ++    + +
Sbjct: 4   QEGESIKKIS--GMYQEWFLDYASYVILERAIPSIYDGLKPVQRRILHSMRELE---DGR 58

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAER 129
           Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA R
Sbjct: 59  YNKVANIVGNTM-KYHPHGDASITDAIVQIGQ----KDLLIDTQGNWGNILTGDRAAAAR 113

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y E RL K A  L       T  ++P+YDG  +EP+ L  ++P +L  G  GIAVG++T 
Sbjct: 114 YIEARLTKFA--LEVVYNPKTTHWQPSYDGRNKEPIDLPVKFPLLLAQGVEGIAVGLSTK 171

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E++D  +A +      L         PDF TG  I         Y  G     
Sbjct: 172 ILPHNFIELIDASIAYLRGKKFTL--------YPDFQTGGYIE-----VADYNDGMRGGK 218

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I +   D+  + ++EIP+     ++++ I +   + +I       +++      
Sbjct: 219 VRIRAKISQV--DKTTLKISEIPFSTTTGSLIDSILKANDKGKIKI--RKIEDNTAADVE 274

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I L+ G S D  ++ LY +T  +   S N   ++  KPE  ++  ILK       +++
Sbjct: 275 ILIHLQTGTSPDKTIDALYAFTDCEVSLSPNACVIDEQKPEFLSVSEILKRNTDNTVQLL 334

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  +  L++ +++ H      I +                      +  +       + 
Sbjct: 335 KRELEISLDELQEQWHFSSLERIFI-------------------ENRIYHQIEEEETWEG 375

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +I+ ID       S     ++E     + E+R+ R++    D     + SL  +I E   
Sbjct: 376 VIETIDKGLKPFTSHLLRAVTEEDIVKLTEIRIKRISRFDLDKADQHILSLEDKIAEVKH 435

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            L++   L+         +K +      R+T I          D I    + V  +   Y
Sbjct: 436 HLAN---LIDYSIAYFKELKTKYGAGKERKTEI-------RTFDIIDASKVAVANTRF-Y 484

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           V R             +G  G  +R ++F   LF  S    ++ F   G +   KV
Sbjct: 485 VDRT------------EGFIGTSLRKDEF---LFECSDIDDIIIFRRDGVMMVTKV 525


>gi|153808895|ref|ZP_01961563.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
 gi|149128228|gb|EDM19447.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
          Length = 881

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 161/741 (21%), Positives = 288/741 (38%), Gaps = 94/741 (12%)

Query: 1   MTEHIISSDEEE---------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++ I    EE          ++ +    +T   QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDEINEIPEEHSDYKPADARDENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  +  +           E    PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASINYLRGE--------EFQLYPDFQTGGS 221

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           I         Y  G     ++  + I     D + + +TEIPY    +++++ I + V +
Sbjct: 222 I-----DVAKYNDGERGGAVKVRAKI--NKLDNKTLAITEIPYGKTTSSVIDSILKAVDK 274

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  KP 
Sbjct: 275 GKIKI--RKVDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPH 332

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T+  +LK       +++ +  +    +  +  H      I +       +    S + 
Sbjct: 333 FLTVSKVLKKSADNTLDLLKQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSKDM 392

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + A   + +R                            +++     ++E+++ R+     
Sbjct: 393 DAACEHIDERLTP-----------------FYPSFIREVTKEDILKLMEIKMGRILKFNS 435

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDME 528
           D     +  +  +I E  D L+    ++         +K++     PRRT +        
Sbjct: 436 DKADELIARMKEDIAEIDDHLAH---IVDYTVNWYQMLKNKYGKNFPRRTELR------- 485

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                +    VV  +   Y+ R             +G  G  ++ ++FV +    S    
Sbjct: 486 -NFDTIEAAKVVEANEKLYINR------------EEGFIGTALKKDEFVAN---CSDIDD 529

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ F   G      V          +    +N+   N    I  +  + + +     +  
Sbjct: 530 VIVFFRDGKYIVTPV---ADKKFVGKNILYVNVFKKNDKRTIYNV-TYRDGKEGTTYIKR 585

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T     R   ++     +R    +   +   EI+ V             ++ + +  
Sbjct: 586 FAVTSVVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNP-------RVRRIIFE 638

Query: 709 PISAIRVFAGRNSVGVRGISL 729
              +     GR + GV    L
Sbjct: 639 RDFSEISIKGRQAQGVILTRL 659


>gi|215480285|gb|ACJ67487.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480289|gb|ACJ67489.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480301|gb|ACJ67495.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480303|gb|ACJ67496.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480307|gb|ACJ67498.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480309|gb|ACJ67499.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480345|gb|ACJ67517.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480357|gb|ACJ67523.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480359|gb|ACJ67524.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 123 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 274


>gi|68067066|ref|XP_675504.1| DNA GyrAse a-subunit [Plasmodium berghei strain ANKA]
 gi|56494726|emb|CAH98020.1| DNA GyrAse a-subunit, putative [Plasmodium berghei]
          Length = 653

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 147/508 (28%), Positives = 260/508 (51%), Gaps = 59/508 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
            V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++   ++KK Y KCAR
Sbjct: 161 DVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCAR 220

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+ +  AA RYTE R+ 
Sbjct: 221 IVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEARIS 279

Query: 137 KAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              + +L D++  + +D+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HN+
Sbjct: 280 DFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNI 339

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVS 254
            +V++  +  + N  I  D L  II+GPDF TG +I+ +   +++ Y TG+G+IVIR   
Sbjct: 340 VDVINASINFLINEKITNDELFNIIKGPDFSTGGIIITKKDTLRDIYNTGKGNIVIRSNI 399

Query: 255 HIEKTSGDR----------------------EQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             E    ++                      +++++  +P  V    ++E I  ++ E++
Sbjct: 400 FYEYAHNNKTYIHHINELGNLENLECDNKSSKKLIIKNLPPNVKPNKLIENIITVLNERK 459

Query: 293 IV---DIADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSLFSVNMVALNG 346
                 ++ +RDES++   R+V+EL++ +  + I N    L +YTS++  +  N V +  
Sbjct: 460 NEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLLKYTSMEIDYHCNFVCIGY 519

Query: 347 -YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                +F+L   L+ +   R + + +  +   N  +   +++         + +++  + 
Sbjct: 520 ENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKELNIIDLYLTIQKKILDIISFLH 579

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            + N E  +  L                               L+E Q + IL +++ +L
Sbjct: 580 KNQNIEQIQNYLKSN--------------------------FKLNEDQIKYILSMKIQKL 613

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSS 493
             +   +      +L  + +    I+ +
Sbjct: 614 INIKNINFDIRKYNLLNKRQSNQYIIDN 641


>gi|282860360|ref|ZP_06269428.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586858|gb|EFB92095.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
          Length = 917

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 132/523 (25%), Positives = 236/523 (45%), Gaps = 50/523 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQ----KYLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 152 --LETVFNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              ++ +   D  +         PDFPTG  I       + Y  G+    ++  + IE  
Sbjct: 210 SAAISYLKGKDFSI--------YPDFPTGGSI-----DVSKYNDGQRGGALKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    +++ E I + + + +I       ++       + + L  G S
Sbjct: 255 KLDNKTLVIREVPFTKTASSLQESITKAIEKGKI--KVRKVEDMTASEVEIQLHLTPGTS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +LK  V   ++++    +   ++
Sbjct: 313 SDKTIDALYAFTDCEINISPNCCVIEDNKPGFLTVSDVLKYSVNHTKDLLQLELEIRKHE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A DI +++  +D    
Sbjct: 373 LEEQL-----FYNSLERIFIEERIYKERKFE------------TAKDIDEVVLFVDSKLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              +     ++      +LE+++ R+    +D     +  +  EI E    LS    ++ 
Sbjct: 416 PFKNTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIAKIKAEIAEIDKDLS---EMVR 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
           +  +    +K++     PR T I      +  +     E + +
Sbjct: 473 VTIEWFKHLKEKYGKDHPRLTEIKSFDTIIAAKVVDANEKLYI 515


>gi|215480283|gb|ACJ67486.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480287|gb|ACJ67488.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480293|gb|ACJ67491.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480295|gb|ACJ67492.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480297|gb|ACJ67493.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480299|gb|ACJ67494.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480305|gb|ACJ67497.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480343|gb|ACJ67516.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480351|gb|ACJ67520.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480355|gb|ACJ67522.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 2   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 61

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 62  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 121

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 122 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 181

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 182 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 215

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 216 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 273


>gi|257362193|gb|ACV53184.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|224458692|gb|ACN43209.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 190/298 (63%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S 
Sbjct: 123 PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLE 274


>gi|329956024|ref|ZP_08296795.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
 gi|328524783|gb|EGF51837.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
          Length = 904

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 172/801 (21%), Positives = 308/801 (38%), Gaps = 88/801 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ 
Sbjct: 152 --LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V  +   +  L         PDF TG  I       + Y  G     +R  + IE  
Sbjct: 210 DASVKYLHKEEFKL--------YPDFQTGGNI-----DVSKYNDGERGGAVRVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIPY    A++ + I +   + +I       ++       +++ L  G S
Sbjct: 255 KVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIKIKK--VEDLTSGSVEILVHLAPGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   ++  KP   T+  +LK  V     ++ +  +   N+
Sbjct: 313 SDKTIDALYAFTDCEVSISPNCCVIDEQKPHFLTVSAVLKKSVDNTLALLRQELEIRKNE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +  H      I +       RI +     +            A ++    + ID+   
Sbjct: 373 ILESLHFSSLEKIFIEE-----RIYKDKEFEQ------------AKNMDAACEHIDERLT 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +++     ++E+++AR+     D     +  +  +I+E    L++   ++ 
Sbjct: 416 PYYPTFIREVTKEDILKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVE 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                   +K++     PRRT +         +     E + +                 
Sbjct: 473 YTVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYINR--------------- 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++ ++F+ +    S    V+ F   G      V          +   
Sbjct: 518 -----EEGFIGTGLKKDEFIAN---CSDLDDVIIFFRDGRYIITPV---ADKKFVGKNIL 566

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             N+   N    I  ++ + + +   + +     T     R   ++     +R       
Sbjct: 567 YANVFKKNDKRTIYNVV-YRDGKEGTHYIKRFAVTSVVRDREYDVTQGTPDSRIVYFTAN 625

Query: 678 LDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +   E++ V             E D       G+     I   R    + ++  RG S 
Sbjct: 626 PNGEAEVIKVTLKPNPRIRRIIFEEDFSQINIKGRQAMGNIL-TRNPVHKIALKQRGGST 684

Query: 730 AKGDQVISMAIV--LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             G +V     V  L+ D   +    +         L +G+        N+   +     
Sbjct: 685 LGGRKVWFDQDVLRLNYDGRGEYLGEFQSDEQILVVLNNGEFYTSNFDVNNHYEDNIRVL 744

Query: 788 ERCQELKLKEQFILTVSEKGF 808
           E+    K+    +    ++G+
Sbjct: 745 EKYDSSKVWTAVLYDADQQGY 765


>gi|215480321|gb|ACJ67505.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480333|gb|ACJ67511.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 123 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 274


>gi|215480291|gb|ACJ67490.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480347|gb|ACJ67518.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480349|gb|ACJ67519.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480353|gb|ACJ67521.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 1   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 60

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 61  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 120

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 121 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 180

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 181 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 214

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 272


>gi|215480323|gb|ACJ67506.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480325|gb|ACJ67507.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480337|gb|ACJ67513.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 2   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 61

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 62  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 121

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 122 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 181

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 182 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 215

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 216 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 273


>gi|160885388|ref|ZP_02066391.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
 gi|156109010|gb|EDO10755.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
          Length = 881

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 160/740 (21%), Positives = 285/740 (38%), Gaps = 92/740 (12%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++ I    EE                 +T   QN +L YA  VIL RA+P + DGLKPV
Sbjct: 1   MSDEINEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+
Sbjct: 61  QRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLID 112

Query: 113 GQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EPV L  ++
Sbjct: 113 CQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKF 170

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           P +L  G  GIAVG+++ I  HN  E+ D  ++ +           E    PDF TG  I
Sbjct: 171 PLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGE--------EFQLYPDFQTGGSI 222

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
                    Y  G     ++  + I     D + + +TEIPY    + +++ I + V + 
Sbjct: 223 -----DVAKYNDGERGGAVKVRAKI--NKIDNKTLAITEIPYGKTTSTVIDSILKAVDKG 275

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  KP  
Sbjct: 276 KIKI--RKVDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHF 333

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  +L+       +++ +  +   N+  +  H      I +       +    S + +
Sbjct: 334 LTVSKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMD 393

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A   + +R                            +++     ++E+++ R+     D
Sbjct: 394 AACAHIDERLTP-----------------YYPKFIREVTKEDILKLMEIKMGRILKFNSD 436

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMED 529
                +  +  E+ E   I +  + ++         +K++     PRRT +         
Sbjct: 437 KADELIAKMKEEVAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELR-------- 485

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
               +    VV  +   Y+ R             +G  G  ++ ++FV      S    V
Sbjct: 486 NFDTIEAAKVVEANEKLYINR------------EEGFIGTALKKDEFVA---CCSDIDDV 530

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F   G      V          +    +N+   N    I  +  + + +     +   
Sbjct: 531 IIFFRDGKYIVTPV---ADKKFVGKNVLYVNVFKKNDKRTIYNV-AYRDGKEGTTYVKRF 586

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T     R   ++     +R    +   +   EI+ V             ++ + +   
Sbjct: 587 AVTSVVRDREYDVTQGTPESRITYFSANPNGEAEIIKVTLKPNP-------RVRRIIFEH 639

Query: 710 ISAIRVFAGRNSVGVRGISL 729
             +     GR + GV    L
Sbjct: 640 DFSEVSIKGRQARGVILTRL 659


>gi|117654209|gb|ABK55535.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654213|gb|ABK55537.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654219|gb|ABK55540.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654221|gb|ABK55541.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654223|gb|ABK55542.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654225|gb|ABK55543.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654227|gb|ABK55544.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654229|gb|ABK55545.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654231|gb|ABK55546.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654233|gb|ABK55547.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654235|gb|ABK55548.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654237|gb|ABK55549.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 139/223 (62%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|116486985|emb|CAJ38780.1| DNA gyrase subunit A [Mesorhizobium tianshanense]
          Length = 212

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 147/212 (69%), Positives = 172/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ K+TVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASGSEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE    D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGRVNIEARGND 212


>gi|291513745|emb|CBK62955.1| DNA topoisomerase IV subunit A [Alistipes shahii WAL 8301]
          Length = 954

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 151/600 (25%), Positives = 249/600 (41%), Gaps = 77/600 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +EE G+    +T   +N +L YA  VIL RA+P + DGLKPV RRIL  M  +    + 
Sbjct: 47  TQEEGGVRK--LTGMYKNWFLDYASYVILERAVPHVEDGLKPVQRRILHAMKVVD---DG 101

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           +Y K A + G+ M  YHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA 
Sbjct: 102 RYNKVANLVGQTMQ-YHPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAG 156

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A  L     K T ++  +YDG  +EPV L  ++P +L  G  GIAVG+A+
Sbjct: 157 RYIEARLSKFA--LDVVFNKKTTEWMLSYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLAS 214

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  HN  E+++  +A +   D  L         PDFPTG +        + Y  G    
Sbjct: 215 KILPHNFVELINAAIAHLQGRDFQL--------YPDFPTGGM-----ADVSRYNDGLRGG 261

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            ++  + I  +  D+  + +TEIPY     ++ + I +   + +I       D++     
Sbjct: 262 TVKVRAKI--SKIDKRTLAITEIPYTTTTESIKDSIIKANDKGKIKI--RKVDDNTADKV 317

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            +VI++    S+D  ++ LY +T  +   + N   +   KP    +  IL+      + +
Sbjct: 318 EIVIQVSPDESSDKTIDALYAFTDCEVSIAPNSCVIWDEKPHFLGVSEILRRSAEHTKSL 377

Query: 369 VVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +    K  L +  +  H      I     L +++   +      +A              
Sbjct: 378 LGLELKIRLGELSEAWHAASLERIFIENRLYQLIEGCKSREEAYSA-------------- 423

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                 +D             ++    + + EL+  R++    +   NE+  +     + 
Sbjct: 424 ------VDKGLEPFKMRLRREVTLEDVQKLTELKFIRISRYDSEKADNEIRQIEE---DL 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
                    L          ++D+      RRT + E             E   V V++ 
Sbjct: 475 KSTQYDLDHLTEYAVAYYERIRDKYGKGRERRTELRE---------FDSIEATKVAVTN- 524

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                    +Y  +  G  G  G  M+D +FV D    S    V+ F+  G     KV  
Sbjct: 525 -------AKLYVDRAEGFFGI-GKSMKDAEFVCD---CSDIDDVIVFTKDGRYVITKVSD 573


>gi|3548916|gb|AAC68574.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 196

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 157/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A +D+ DI 
Sbjct: 181 EVINGCLAYVDDEDIS 196


>gi|224458696|gb|ACN43211.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 192/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 123 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL+ +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELMEIKERFNDERRTEIVTSGLE 274


>gi|117654189|gb|ABK55525.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654191|gb|ABK55526.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654193|gb|ABK55527.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654195|gb|ABK55528.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654197|gb|ABK55529.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654199|gb|ABK55530.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654201|gb|ABK55531.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654203|gb|ABK55532.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654205|gb|ABK55533.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654207|gb|ABK55534.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 138/223 (61%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|257362209|gb|ACV53189.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362206|gb|ACV53188.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362190|gb|ACV53183.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+ KYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVISKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|215480339|gb|ACJ67514.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 1   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 60

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 61  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 120

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 121 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 180

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 181 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 214

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 272


>gi|149278653|ref|ZP_01884789.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
 gi|149230648|gb|EDM36031.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
          Length = 1019

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 156/672 (23%), Positives = 284/672 (42%), Gaps = 71/672 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    + ++ K A + 
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHIHDGLKPVQRRILHSLKEMD---DGRFNKAANVI 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  AA RY E RL K
Sbjct: 75  GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDSAAAPRYIEARLSK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ +      DT  ++ +YDG   EP+ L  ++P +L  G  GIAVG+AT +  HN  E
Sbjct: 130 FANEV--AFNSDTTVWQLSYDGRNNEPITLPIKFPLLLAQGAEGIAVGLATKVMPHNFVE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  + V+     ++         PDF TG +        +AY  G     +R  + I 
Sbjct: 188 LLDASMEVLRGNRPNI--------LPDFFTGGM-----ADFSAYNEGMRGGKVRVRAKI- 233

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  D++ +V+TEIP+     ++++ I       +        +++      +V++L  G
Sbjct: 234 -TEKDKKTLVITEIPFSTTTGSVIDSILS--ANDKGKIKIKKIEDNTAANVEIVVQLAPG 290

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            S DV ++ LY +TS +   S N   + G KP   ++  IL       + ++ +  +  L
Sbjct: 291 ISPDVTIDALYAFTSCEVSISPNTCIIKGDKPHFMSVNDILTENTMHTKALLKQELEIRL 350

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           N+ ++         I  ++L ++        +PE           N+ +   ++ ++++ 
Sbjct: 351 NELQE--------KIFFSSLLKIFIQEGMYKHPE---------YENSGNFDAVVAVLNNL 393

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      +     + +++  ++ +T         ++ +L  EIK   + L     L
Sbjct: 394 FEPFLPQLYRPIQPEDFKKLIDKPMSSITRFDVKKADEQMQALADEIKVVKNHLRH---L 450

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                     +KD+    R+ +    L D  +   +   ++ + +               
Sbjct: 451 TDYAIAWFQKLKDKYGKGRQRKTEIRLFDRVEASKVALANVKLYM--------------- 495

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
             R  G   +G  +R ++FV D    S    V+ F   G     KV      +   +G  
Sbjct: 496 -NREDGFIGTGSGLRKDEFVAD---CSDIDEVIVFRENGKCIITKV---ADKTFVGKGI- 547

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L   +     ER    M + + ES  + +           +   L+   + +R       
Sbjct: 548 LHAQVFKKGDERTIYNMIYKDGESGISYIKRFAVVGVTRDKEYDLTKGTKGSRVLYFTAN 607

Query: 678 LDSRDEILSVET 689
            +   E+++V+ 
Sbjct: 608 PNGEAEVVNVQL 619


>gi|253571133|ref|ZP_04848540.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
 gi|251839086|gb|EES67170.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
          Length = 881

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 160/725 (22%), Positives = 283/725 (39%), Gaps = 85/725 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  ++ +    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    
Sbjct: 17  PADARDENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ +      L         PDF TG  I         Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRGESFQL--------YPDFQTGGSI-----DVAKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  + I     D + + +TEIPY    + +++ I + V + +I       D++   
Sbjct: 233 GGAVKVRAKI--NKLDNKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK       
Sbjct: 289 NVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLKKSADNTL 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +    +  +  H      I +       +    S + + A             
Sbjct: 349 GLLKQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAH---------- 398

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  IDD            +++     ++E+++ R+     D     +  +  EI E
Sbjct: 399 -------IDDRLTPFYPSFIREVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             D L+    ++         +K++     PRRT +             +    VV  + 
Sbjct: 452 IDDHLAH---IVDYTVNWYQMLKNKYGKNFPRRTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV +    S    V+ F   G      V 
Sbjct: 501 KLYINR------------DEGFIGTALKKDEFVAN---CSDIDDVIVFFRDGKYIVTPV- 544

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +    +N+   N    I  I  + + +     +     T     R   ++ 
Sbjct: 545 --ADKKFVGKNILYVNVFKKNDKRTIYNI-TYRDGKEGTTYIKRFAVTGVVRDREYDVTQ 601

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               +R    +   +   EI+ V             ++ + +     +     GR + GV
Sbjct: 602 GTPDSRITYFSANPNGEAEIIKVTLKPNP-------RVRRIIFERDFSEISIKGRQAQGV 654

Query: 725 RGISL 729
               L
Sbjct: 655 ILTRL 659


>gi|265765085|ref|ZP_06093360.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
 gi|263254469|gb|EEZ25903.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
          Length = 851

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 144/585 (24%), Positives = 249/585 (42%), Gaps = 73/585 (12%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
             QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M 
Sbjct: 1   MYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ 57

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFL 142
            +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K A  L
Sbjct: 58  -FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFA--L 110

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
                  T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  
Sbjct: 111 DVVFNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAS 170

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           ++ + N +  L         PDF TG  I       + Y  G     ++  S I     D
Sbjct: 171 ISYLRNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVKIRSKI--NKVD 215

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY     ++++ I + V + +I       D++      +++ L  G S+D 
Sbjct: 216 NKTLAITEIPYGRTTTSVIDSILKAVDKGKIKI--RKVDDNTAANVEILVHLAPGTSSDK 273

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP   T+  +LK        ++ +  +   ++ ++
Sbjct: 274 TIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLKKSADNTLSLLRQELEIKKDELQE 333

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +       +    S + + A   + +R                      
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDRRLTP-----------------FY 376

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
           S     +++     ++E+++ R+     D     +  +  +I E  + L++   ++    
Sbjct: 377 SQFIREVTKDDILRLMEIKMGRILKFNSDKAEEAIARMNEDIAEINNHLAN---IVEYTI 433

Query: 503 QELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           Q    +K++     PRRT +             +    VV  +   Y+ R          
Sbjct: 434 QWYRMLKEKYGKNFPRRTELR--------NFDTIEAAKVVEANEKLYINR---------- 475

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
              +G  G  ++ ++FV      S    V+ F   G      V  
Sbjct: 476 --EEGFIGTSLKKDEFVA---CCSDIDDVIIFYRDGRYMVTPVAD 515


>gi|256483424|gb|ACU81114.1| DNA gyrase subunit A [Bacillus sp. LL3]
          Length = 230

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 138/229 (60%), Positives = 180/229 (78%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ K
Sbjct: 1   GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 60

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +N
Sbjct: 61  DTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSEN 120

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 121 PEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 180

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIE+   
Sbjct: 181 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIEIPLD 229


>gi|237715450|ref|ZP_04545931.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262405292|ref|ZP_06081842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643163|ref|ZP_06720993.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294810552|ref|ZP_06769204.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229444759|gb|EEO50550.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262356167|gb|EEZ05257.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641508|gb|EFF59696.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294442213|gb|EFG11028.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 881

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 160/740 (21%), Positives = 285/740 (38%), Gaps = 92/740 (12%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++ I    EE                 +T   QN +L YA  VIL RA+P + DGLKPV
Sbjct: 1   MSDEINEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+
Sbjct: 61  QRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLID 112

Query: 113 GQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EPV L  ++
Sbjct: 113 CQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKF 170

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           P +L  G  GIAVG+++ I  HN  E+ D  ++ +           E    PDF TG  I
Sbjct: 171 PLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHGE--------EFQLYPDFQTGGSI 222

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
                    Y  G     ++  + I     D + + +TEIPY    + +++ I + V + 
Sbjct: 223 -----DVAKYNDGERGGAVKVRAKI--NKIDNKTLAITEIPYGKTTSTVIDSILKAVDKG 275

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  KP  
Sbjct: 276 KIKI--RKVDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHF 333

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  +L+       +++ +  +   N+  +  H      I +       +    S + +
Sbjct: 334 LTVSKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMD 393

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A   + +R                            +++     ++E+++ R+     D
Sbjct: 394 AACAHIDERLTP-----------------YYPKFIREVTKEDILKLMEIKMGRILKFNSD 436

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMED 529
                +  +  E+ E   I +  + ++         +K++     PRRT +         
Sbjct: 437 KADELIARMKEEVAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELR-------- 485

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
               +    VV  +   Y+ R             +G  G  ++ ++FV      S    V
Sbjct: 486 NFDTIEAAKVVEANEKLYINR------------EEGFIGTALKKDEFVA---CCSDIDDV 530

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F   G      V          +    +N+   N    I  +  + + +     +   
Sbjct: 531 IIFFRDGKYIVTPV---ADKKFVGKNVLYVNVFKKNDKRTIYNV-AYRDGKEGTTYVKRF 586

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T     R   ++     +R    +   +   EI+ V             ++ + +   
Sbjct: 587 AVTSVVRDREYDVTQGTPESRITYFSANPNGEAEIIKVTLKPNP-------RVRRIIFEH 639

Query: 710 ISAIRVFAGRNSVGVRGISL 729
             +     GR + GV    L
Sbjct: 640 DFSEVSIKGRQARGVILTRL 659


>gi|288801298|ref|ZP_06406752.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331681|gb|EFC70165.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 906

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 150/588 (25%), Positives = 250/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   Q  +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYQGWFLAYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL + A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQ----KNLLIDMQGNWGNILTGDRAAAPRYIEARLSQFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  QEP+ L A++P +L  G  GIAVG+++ I  HN  E+ 
Sbjct: 152 --LDVVFNPKTTNWQLSYDGRNQEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNPNEIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              ++ +           E    PDFPTG  I       + Y  G     I+  + IE  
Sbjct: 210 QAAISYLRGE--------EFQLYPDFPTGGSI-----DVSKYNDGLRGGSIKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIPY     ++++ I + + + +I   A   D++      + I L  G S
Sbjct: 255 KLDSKTLVIREIPYSKTTTSLIDSILKAIDKGKI--KAKKVDDNTAAEVEIQIHLASGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L   V          T  LL K
Sbjct: 313 SDKTIDALYAFSDCEVNISPNCCVIEDQKPRFMTVSEVLCHSVD--------STMGLLRK 364

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                   +   +  A+L+ +    R   + +            A+++   I  ID+   
Sbjct: 365 ELQIRKDELLSQLFFASLESIFIEERIYKDKK---------FEQAANVDAAIKHIDERLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    ++      +LE+++ R+    ++     +  +  EIK+    L+    ++ 
Sbjct: 416 PFKKDFIREITRDDILHLLEIKMQRILKFNKEKAEELIAKMKQEIKDIDYKLAH---MVD 472

Query: 500 IIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++      R T I         +     E +        Y+ R       
Sbjct: 473 VTIEWFTFLKEKYGKDHHRLTEIRNFDTIEATKVVEANEKL--------YINRQD----- 519

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  G  G  ++ ++FV +    S    ++ F   G     KV  
Sbjct: 520 -------GFIGTSLKKDEFVCN---CSDIDDIIIFYKDGLYKIIKVAE 557


>gi|224458676|gb|ACN43201.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 135/298 (45%), Positives = 190/298 (63%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 123 PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 274


>gi|215480329|gb|ACJ67509.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 1   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 60

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 61  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 120

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 121 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 180

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 181 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 214

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 272


>gi|215480319|gb|ACJ67504.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480331|gb|ACJ67510.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480335|gb|ACJ67512.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 277

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 2   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 61

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 62  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 121

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 122 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 181

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 182 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 215

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 216 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 273


>gi|117654215|gb|ABK55538.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654217|gb|ABK55539.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 139/223 (62%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LM+II GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMDIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|53711702|ref|YP_097694.1| DNA topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60679941|ref|YP_210085.1| DNA topoisomerase IV subunit A [Bacteroides fragilis NCTC 9343]
 gi|253564240|ref|ZP_04841697.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|52214567|dbj|BAD47160.1| topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60491375|emb|CAH06123.1| putative topoisomerase [Bacteroides fragilis NCTC 9343]
 gi|251948016|gb|EES88298.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|301161466|emb|CBW21006.1| putative topoisomerase [Bacteroides fragilis 638R]
          Length = 851

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 143/585 (24%), Positives = 249/585 (42%), Gaps = 73/585 (12%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
             QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M 
Sbjct: 1   MYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTMQ 57

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFL 142
            +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K A  L
Sbjct: 58  -FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFA--L 110

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
                  T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  
Sbjct: 111 DVVFNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAS 170

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           ++ + N +  L         PDF TG  I       + Y  G     ++  S I     D
Sbjct: 171 ISYLRNEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVKIRSKI--NKVD 215

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY     ++++ I + V + +I       D++      +++ L  G S+D 
Sbjct: 216 NKTLAITEIPYGRTTTSVIDSILKAVDKGKIKI--RKVDDNTAANVEILVHLAPGTSSDK 273

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP   T+  +L+        ++ +  +   ++ ++
Sbjct: 274 TIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLRKSADNTLSLLRQELEIKKDELQE 333

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +       +    S + + A   + +R                      
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDRRLTP-----------------FY 376

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
           S     +++     ++E+++ R+     D     +  +  +I E  + L++   ++    
Sbjct: 377 SQFIREVTKDDILRLMEIKMGRILKFNSDKAEEAIARMNEDIAEINNHLAN---IVEYTI 433

Query: 503 QELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           Q    +K++     PRRT +             +    VV  +   Y+ R          
Sbjct: 434 QWYRMLKEKYGKNFPRRTELR--------NFDTIEAAKVVEANEKLYINR---------- 475

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
              +G  G  ++ ++FV      S    V+ F   G      V  
Sbjct: 476 --EEGFIGTSLKKDEFVA---CCSDIDDVIIFYRDGRYMVTPVAD 515


>gi|224536481|ref|ZP_03677020.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521923|gb|EEF91028.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 892

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 161/726 (22%), Positives = 291/726 (40%), Gaps = 86/726 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLE---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ 
Sbjct: 152 --LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +   +  L         PDF TG  I       + Y  G     +R  + IE  
Sbjct: 210 DASIHYLHEEEFKL--------YPDFQTGGSI-----DVSKYNDGERGGAVRIRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + + + EIPY    A++ + I +   + +I       ++       +++ L  G S
Sbjct: 255 KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGKIKIKK--VEDLTSGNVEILVHLAPGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   ++  KP   T+  IL+  V     ++ +  +   ++
Sbjct: 313 SDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTVSNILRKSVDNTLSLLRQELEIRKDE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +  H      I +       RI +     +            A ++    + ID+   
Sbjct: 373 ILESLHFASLEKIFIEE-----RIYKDKEFEQ------------AQNMDAACEHIDERLT 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +++     ++E+++ R+     D     +  +  +I+E   I    + ++ 
Sbjct: 416 PYYPQFVREVTKEDILKLMEIKMGRILKFNSDKAEELIARMKADIEE---IDHHLANIVE 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                 L +K++     PRRT +             +    VV  +   Y+ R       
Sbjct: 473 YTVDWYLMLKNKYGKNFPRRTELR--------NFDTIEASKVVEANEKLYINR------- 517

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                 +G  G  ++ ++F+++    S+   V+ F   G      V          +   
Sbjct: 518 -----EEGFIGTGLKKDEFLSN---CSSLDDVIIFFRDGRYLVTPV---SDKKFVGKNIL 566

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             N+   N    I  ++ + + +   + +     T     R   ++     +R       
Sbjct: 567 YANVFKKNDKRTIYNVV-YRDGKEGTHYIKRFAVTSIIRDREYDVTQGTPDSRIMYFTAN 625

Query: 678 LDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +   E++ V             E D       G+  R  I   ++   + ++  RG S 
Sbjct: 626 PNGEAEVIKVTLKPNPRVRRIIFEEDFSAIGIKGRQARGNIL-TKLPVHKIALKQRGGST 684

Query: 730 AKGDQV 735
             G +V
Sbjct: 685 LGGRKV 690


>gi|298386698|ref|ZP_06996253.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
 gi|298260372|gb|EFI03241.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
          Length = 881

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 160/725 (22%), Positives = 282/725 (38%), Gaps = 85/725 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  ++ +    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    
Sbjct: 17  PADARDENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ +      L         PDF TG  I         Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRGESFQL--------YPDFQTGGSI-----DVAKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  + I     D + + +TEIPY    + +++ I + V + +I       D++   
Sbjct: 233 GGAVKVRAKI--NKLDNKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK       
Sbjct: 289 NVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLKKSADNTL 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +    +  +  H      I +       +    S + + A             
Sbjct: 349 GLLKQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAH---------- 398

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                  IDD            +++     ++E+++ R+     D     +  +  EI E
Sbjct: 399 -------IDDRLTPFYPSFIREVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             D L+    ++         +K +     PRRT +             +    VV  + 
Sbjct: 452 IDDHLAH---IVDYTVNWYQMLKSKYGKNFPRRTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV +    S    V+ F   G      V 
Sbjct: 501 KLYINR------------DEGFIGTALKKDEFVAN---CSDIDDVIVFFRDGKYIVTPV- 544

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +    +N+   N    I  I  + + +     +     T     R   ++ 
Sbjct: 545 --ADKKFVGKNILYVNVFKKNDKRTIYNI-TYRDGKEGTTYIKRFAVTGVVRDREYDVTQ 601

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               +R    +   +   EI+ V             ++ + +     +     GR + GV
Sbjct: 602 GTPDSRITYFSANPNGEAEIIKVTLKPNP-------RVRRIIFERDFSEISIKGRQAQGV 654

Query: 725 RGISL 729
               L
Sbjct: 655 ILTRL 659


>gi|14994221|gb|AAK73346.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|3548914|gb|AAC68573.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 196

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 119/196 (60%), Positives = 156/196 (79%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ++N DI 
Sbjct: 181 EVINGCLAYVENEDIS 196


>gi|110589965|gb|ABG77429.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589973|gb|ABG77433.1| DNA gyrase A [Shigella flexneri]
          Length = 194

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 120/194 (61%), Positives = 153/194 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|261880504|ref|ZP_06006931.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
 gi|270332844|gb|EFA43630.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
          Length = 916

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 150/588 (25%), Positives = 248/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+PD+ DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 60  LSGMYKNWFLDYASYVILERAVPDIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 116

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 117 TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 171

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ +  HN  E+ 
Sbjct: 172 --LETVFNPKTTEWQQSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLSSKVLPHNFNELC 229

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  ++ +           E    PDFPTG  I       + Y  G+    +R  + IE  
Sbjct: 230 DAAISYLRGK--------EFELYPDFPTGGAI-----DISKYNDGQRGGTVRVRAKIE-- 274

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    A++ E I   + + +I   A    +   +   + ++L  G S
Sbjct: 275 KLDSKTLVIREVPFTKTAASLQESITRAIEKGKI--KARRVIDMTARDVEIQVQLSPGIS 332

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   ++G KP   T+  +LK        + + RT+ L+ K
Sbjct: 333 SDKTIDALYAFTDCEINISPNCCVIDGNKPAFLTISDVLKHNAD--RTMGLLRTELLIRK 390

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                 +       +   + + +  +F   P                 K ++  +D    
Sbjct: 391 GELEEMLFFASLERIFIEERMYKEKKFEQAPSQ---------------KAVLAFLDSKFE 435

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    + E     +LE+++ R+    +D     +     EI     I    + +  
Sbjct: 436 PFKKDLIREIREDDYLRLLEIKMQRILKYNKDKADQLMKKTMAEI---KGIDHDLAHMTD 492

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +       +K+      PR T I             +    VV  +   Y+ R       
Sbjct: 493 VTIAWYKHLKNTYGKDYPRLTEIR--------SFDTIDAATVVEANEKLYINRQD----- 539

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  G  G  ++  +FV +    S    ++ F   G     KV  
Sbjct: 540 -------GFVGTGLKKHEFVCN---CSDLDDIIIFYRDGKYKVMKVAD 577


>gi|110589963|gb|ABG77428.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589969|gb|ABG77431.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589975|gb|ABG77434.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589977|gb|ABG77435.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 120/194 (61%), Positives = 154/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|295086380|emb|CBK67903.1| DNA topoisomerase IV subunit A [Bacteroides xylanisolvens XB1A]
          Length = 881

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 161/740 (21%), Positives = 285/740 (38%), Gaps = 92/740 (12%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++ I    EE                 +T   QN +L YA  VIL RA+P + DGLKPV
Sbjct: 1   MSDEINEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+
Sbjct: 61  QRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLID 112

Query: 113 GQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EPV L  ++
Sbjct: 113 CQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKF 170

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           P +L  G  GIAVG+++ I  HN  E+ D  ++ +           E    PDF TG  I
Sbjct: 171 PLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHGE--------EFQLYPDFQTGGSI 222

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
                    Y  G     ++  + I     D + + +TEIPY    + +++ I + V + 
Sbjct: 223 -----DVAKYNDGERGGAVKVRAKI--NKIDNKTLAITEIPYGKTTSTVIDSILKAVDKG 275

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  KP  
Sbjct: 276 KIKI--RKVDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSKPHF 333

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  +L+       +++ +  +   N+  +  H      I +       +    S + +
Sbjct: 334 LTVSKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSKDMD 393

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A   + +R                            +++     ++E+++ R+     D
Sbjct: 394 AACAHIDERLTP-----------------YYPKFIREVTKEDILKLMEIKMGRILKFNSD 436

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMED 529
                +  +  E+ E   I +  + ++         +K++     PRRT +         
Sbjct: 437 KADELIARMKEEVAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELR-------- 485

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
               +    VV  +   Y+ R             +G  G  ++ ++FV      S    V
Sbjct: 486 NFDTIEAAKVVEANEKLYINR------------EEGFIGTALKKDEFVA---CCSDIDDV 530

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F   G      V          +    +N+   N    I  I  + + +     +   
Sbjct: 531 IIFFRDGKYIVTPV---ADKKFVGKNVLYVNVFKKNDKRTIYNI-AYRDGKEGTTYVKRF 586

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T     R   ++     +R    +   +   EI+ V             ++ + +   
Sbjct: 587 AVTSVVRDREYDVTLGTPESRITYFSANPNGEAEIIKVTLKPNP-------RVRRIIFEH 639

Query: 710 ISAIRVFAGRNSVGVRGISL 729
             +     GR + GV    L
Sbjct: 640 DFSEVSIKGRQARGVILTRL 659


>gi|319900295|ref|YP_004160023.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
 gi|319415326|gb|ADV42437.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
          Length = 881

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 159/701 (22%), Positives = 272/701 (38%), Gaps = 90/701 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITD---------EMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M+E       EE        I D           QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSEDF----NEEHSDYKPADIKDTNVKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKP 56

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M +M    + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LL+
Sbjct: 57  VQRRILHSMRRME---DGRYNKVANIVGHTMQ-FHPHGDASIADALVQLGQ----KDLLV 108

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG  +EPV L  +
Sbjct: 109 DCQGNWGNILTGDSAAASRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVK 166

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  +  +      L         PDF TG  
Sbjct: 167 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASIRYLHKEGFKL--------YPDFQTGGS 218

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           I       + Y  G     +R  S IE    D + + + EIPY    A++ + I +   +
Sbjct: 219 I-----DVSKYNDGERGGTVRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEK 271

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I       ++       +++ L  G S+D  ++ LY +T  +   S N   ++  KP 
Sbjct: 272 GKIKI--RKVEDLTSGSVEILVHLAAGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPH 329

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T+  +L+  V    +++    +   N+ R+  H      I +       RI +     
Sbjct: 330 FLTVSDVLRKSVDNTLDLLRLELEIRRNEIRESLHFASLEKIFIEE-----RIYKDKEFE 384

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +            A  +    + ID             +++     ++E+++AR+     
Sbjct: 385 Q------------AKSMDAACEHIDRRLTPYYPTFIREVTKEDILRLMEIKMARILKFNS 432

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDME 528
           D     +  +  +I+E    L++   ++         +KD+     PRRT +        
Sbjct: 433 DKAEELIARMKSDIEEIDRHLAN---IVEYTVDWYRMLKDKYGKGFPRRTELRSFDTIEA 489

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            +     E + +                       +G  G  ++ ++F+ +    S    
Sbjct: 490 TKVIEANEKLYINR--------------------EEGFIGTGLKKDEFIGN---CSPIDD 526

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ F   G      V          +     NI   N    I  +  + + +   + +  
Sbjct: 527 VIIFFRDGKYIITPV---SEKKFVGKNILYANIFKKNDKRTIYNV-CYRDGKEGTSYIKR 582

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
              T     R   ++     +R        +   E++ V  
Sbjct: 583 FAVTSVVRDREYDVTQGTPDSRITYFTANPNGEAEVIKVTL 623


>gi|110589971|gb|ABG77432.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 155/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEHIPGPDF 194


>gi|3548906|gb|AAC68569.1| DNA gyrase A [Citrobacter freundii]
          Length = 196

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 156/196 (79%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ID+ DI 
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|215480341|gb|ACJ67515.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 191/298 (64%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 123 PKVLTLKKCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 274


>gi|329964604|ref|ZP_08301658.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
 gi|328525004|gb|EGF52056.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
          Length = 893

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 153/685 (22%), Positives = 275/685 (40%), Gaps = 78/685 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             + ++  +    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADAKDANVKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIADALVQLGQ----KDLLVDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 ASRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  +  +   D  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASIKYLHKEDFKL--------YPDFQTGGSI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R  S IE    D + + + EIPY    A++ + I +   + +I       ++    
Sbjct: 244 GGAVRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGKIKI--RKVEDLTSG 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+  V    
Sbjct: 300 SVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDNQKPHFLTVSDVLRKSVNNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +++ +  +   N+ R+  H      I +       RI +     +            A +
Sbjct: 360 DLLRQELEIRRNEIRENLHFASLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +++     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDNRLTPYYPTFIREVTKDDILRLMEIKMARILKFNSDKAEELIARMKADIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +K++     PRRT +         +     E + +    
Sbjct: 463 IDRHLAN---IVEYTVDWFRMLKEKYGKEFPRRTELRNFDTIEATKVIEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+ +    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFIAN---CSPIDDVIIFFRDGKYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     N+   N    I  +  + + +   + +     T     R   ++ 
Sbjct: 556 --ADKKFVGKNILYANVFKKNDKRTIYNV-CYRDGKEGTSYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET 689
               +R        +   EI+ V  
Sbjct: 613 GTPDSRITYFTANPNGEAEIIKVTL 637


>gi|224458680|gb|ACN43203.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458684|gb|ACN43205.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 132/298 (44%), Positives = 189/298 (63%), Gaps = 26/298 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 3   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 62

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 63  RDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGINLLALVDGQ 122

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 123 PKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 182

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 183 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 216

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 217 EREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 274


>gi|255692614|ref|ZP_05416289.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
 gi|260621674|gb|EEX44545.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
          Length = 881

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 153/685 (22%), Positives = 272/685 (39%), Gaps = 78/685 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  ++ +    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    
Sbjct: 17  PADARDESVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ +           E    PDF TG  I         Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRGE--------EFQLYPDFQTGGSI-----DVAKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  + I  T  D + + +TEIPY    + +++ I + V + +I       D++   
Sbjct: 233 GGAVKVRAKI--TKIDNKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK       
Sbjct: 289 NVEILVHLAPGTSSDRTIDALYAFTDCEVSISPNCCVIDDSKPHFLTISKVLKKSADNTL 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +++ +  +    +  +  H      I +       +    S + + A   + +R      
Sbjct: 349 DLLKQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSKDMDAACEHIDKRLTP--- 405

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +++     ++E+++ R+     D     +  +  EI E
Sbjct: 406 --------------YYPQFIREVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              I +  + ++         +K++     PRRT +             +    VV  + 
Sbjct: 452 ---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV      S    V+ F   G      V 
Sbjct: 501 KLYINR------------EEGFIGTSLKKDEFVA---CCSDIDDVIIFFRDGKYIVTPV- 544

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +    +N+   N    I  +  + + +     +     T     R   ++ 
Sbjct: 545 --ADKKFVGKNVLYVNVFKKNDKRTIYNV-AYRDGKEGTTYVKRFAVTSVVRDREYDVTQ 601

Query: 665 FIQINRSGKIAMKLDSRDEILSVET 689
               +R    +   +   EI+ V  
Sbjct: 602 GTPDSRITYFSANPNGEAEIIKVTL 626


>gi|3548908|gb|AAC68570.1| DNA gyrase A [Escherichia coli DSM 30083]
          Length = 196

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 157/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ID+ DI 
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|120435835|ref|YP_861521.1| DNA topoisomerase IV subunit A [Gramella forsetii KT0803]
 gi|117577985|emb|CAL66454.1| topoisomerase IV subunit A [Gramella forsetii KT0803]
          Length = 880

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 149/607 (24%), Positives = 265/607 (43%), Gaps = 76/607 (12%)

Query: 1   MTEHII-SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M E+   + DE+ E     + +T   ++ +L YA  VIL RA+P + DG KPV RRI+  
Sbjct: 1   MEENQEGAQDEQFESKEELIKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + +LI+ QGN+G+
Sbjct: 61  MKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQIGQ----KDILIDTQGNWGN 112

Query: 120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +  GD  AA RY E RL K A  L         +++ +YDG  QEPV L  ++P +L  G
Sbjct: 113 ILTGDRAAAPRYIEARLSKFA--LEVLYSPKLTEWQLSYDGRKQEPVNLPVKFPMLLAQG 170

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T    HN  E++D  +  +      +         PDFPTG +        
Sbjct: 171 AEGIAVGLSTRFLPHNFNELIDASILHLKGKTFKI--------FPDFPTGGI-----ADV 217

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y+ G+    +R  + I +   D+  +V+ EIPY  N +++++ I +     +      
Sbjct: 218 SNYSDGKRGGRVRIRAKINQL--DKNTLVINEIPYGTNTSSLIDSILK--ANDKGKIKIK 273

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             +++      ++I L    S D  ++ LY +T  ++  +     +  +KP    +  +L
Sbjct: 274 KIEDNTAAEVEILIHLPNNMSPDRTIDALYAFTQCENSLAPLGCVIIDHKPIFLGVSEVL 333

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +        ++ R  +  L++  ++ H      I + N     RI R     ET      
Sbjct: 334 RRSTDHTLHLLKRELEIKLDELEEQWHFASLERIFIEN-----RIYRDIEEEETW----- 383

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                    + +I  ID             ++E     + E+R+ R++    D  + +++
Sbjct: 384 ---------QGVIQAIDKGLKPHTKHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKID 434

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRE 536
           +L  +I +    L +   L+         +K +  T   R+T +          + I   
Sbjct: 435 ALEADIAQVKHHLDN---LIDFAIDYFKKLKKDYGTGKERKTEL-------RLFEDIEAT 484

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +V+  + L YV R             +G  G  ++ +++VT     S    V+ F++ G
Sbjct: 485 KVVIRNTKL-YVNR------------AEGFVGTSLKKDEYVT---ECSDIDDVICFTADG 528

Query: 597 FVYKEKV 603
            +   KV
Sbjct: 529 KMMVTKV 535


>gi|282878744|ref|ZP_06287512.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
 gi|281299135|gb|EFA91536.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
          Length = 911

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 134/523 (25%), Positives = 231/523 (44%), Gaps = 50/523 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T  ++ +YDG  +EP+ L A++P +L  G  GIAVG+++ I  HNL E+ 
Sbjct: 152 --LDVVFNPKTTHWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNLNEIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +  +      L         PDFPTG  I         Y  G+    ++  + IE  
Sbjct: 210 EAAIHYLRGEKFQL--------YPDFPTGGSI-----DVEKYNDGQRGGTLKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ EIP+      +++ I   + + +I   A   D++      + + L  G S
Sbjct: 255 KLDNKTLVIKEIPFSKTTTTLIDSILRAIDKGKI--KAKKVDDNTAAEVEIQVHLAPGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY ++  +   S N   +   KP   T+  +L+  V          T  LL K
Sbjct: 313 SDKTIDALYAFSDCEINVSPNCCVIEDDKPGFLTISDVLRHNVD--------STMGLLRK 364

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +     +   +  A+L+++    R   + +            A D+  ++  +D+   
Sbjct: 365 ELEIRKNELLEQLFFASLEKIFIEERIYKDKK---------FEEAKDLDSVVAHVDNRLE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               +    ++      +LE+++ R+    +D   + +     +I     I    + +  
Sbjct: 416 PFKPNFIREVTRDDILRLLEIKMNRILKFNKDKANDFIARTKADI---KSIDHDLAHMTD 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
           +       ++D+     PR T I         +     E + +
Sbjct: 473 VTIHWFEFIRDKYGKDHPRLTEIRSFETIEATKVVEANEKLYI 515


>gi|110589967|gb|ABG77430.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 154/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|117654315|gb|ABK55588.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 173/223 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEXTSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LV +K+I  I DLRDES+R G  +V 
Sbjct: 181 EIPYQVNKAXLIEKIADLVPDKKIDGITDLRDESNRNGMPIVF 223


>gi|29348988|ref|NP_812491.1| DNA topoisomerase IV subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340895|gb|AAO78685.1| topoisomerase IV subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 850

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 159/709 (22%), Positives = 276/709 (38%), Gaps = 84/709 (11%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
             QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M 
Sbjct: 1   MYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ 57

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFL 142
            +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  +
Sbjct: 58  -FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDI 112

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           +      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  
Sbjct: 113 V--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAS 170

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           ++ +      L         PDF TG  I         Y  G     ++  + I     D
Sbjct: 171 ISYLHGESFQL--------YPDFQTGGSI-----DVAKYNDGERGGAVKVRAKI--NKLD 215

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY    + +++ I + V + +I       D++      +++ L  G S+D 
Sbjct: 216 NKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAANVEILVHLAPGTSSDK 273

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP   T+  +LK        ++ +  +    +  +
Sbjct: 274 TIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLKKSADNTLGLLKQELEIKKGEILE 333

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +       +    S + + A                    IDD      
Sbjct: 334 SLHFASLEKIFIEERIYKDKEFEQSKDMDAACAH-----------------IDDRLTPFY 376

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 +++     ++E+++ R+     D     +  +  EI E  D L+    ++    
Sbjct: 377 PSFIREVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAH---IVDYTV 433

Query: 503 QELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                +K +     PRRT +             +    VV  +   Y+ R          
Sbjct: 434 NWYQMLKSKYGKNFPRRTELR--------NFDTIEAAKVVEANEKLYINR---------- 475

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +G  G  ++ ++FV +    S    V+ F   G      V          +    +N
Sbjct: 476 --DEGFIGTALKKDEFVAN---CSDIDDVIVFFRDGKYIVTPV---ADKKFVGKNILYVN 527

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +   N    I  I  + + +     +     T     R   ++     +R    +   + 
Sbjct: 528 VFKKNDKRTIYNI-TYRDGKEGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNG 586

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             EI+ V             ++ + +     +     GR + GV    L
Sbjct: 587 EAEIIKVTLKPNP-------RVRRIIFERDFSEISIKGRQAQGVILTRL 628


>gi|116486983|emb|CAJ38778.1| DNA gyrase subunit A [Mesorhizobium sp. Cc3]
          Length = 212

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 148/212 (69%), Positives = 172/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +  +AVIDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNAAIAVIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|117654255|gb|ABK55558.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654257|gb|ABK55559.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654259|gb|ABK55560.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654261|gb|ABK55561.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654263|gb|ABK55562.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 223

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654281|gb|ABK55571.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D+ +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|307566200|ref|ZP_07628651.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345093|gb|EFN90479.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
          Length = 905

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/588 (23%), Positives = 251/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P++ DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL E+ 
Sbjct: 152 --LETVFNPKTTNWQQSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNEIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              ++ +   D  +         PDF TG  I       + Y  G+    ++  + IE  
Sbjct: 210 SAAISYLKGKDFSI--------YPDFATGGSI-----DVSKYNNGQRGGTLKIRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+    +++ E I + + + +I       ++       + + L    S
Sbjct: 255 KLDHKTLVIREVPFTKTASSIQESITKAIEKGKIKI--RKVEDMTASEVEIHLHLSPNTS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +LK  V    E++ +  +   ++
Sbjct: 313 SDKTIDALYAFTDCEISISPNCCVIENNKPHFLTISDVLKHSVDHTRELLKQELEIRKHE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A D+K+++  +D    
Sbjct: 373 LEEQL-----FYNSLERIFIEERIYKEHKFE------------TAKDLKEVVAFVDSKIE 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D   + +  +  EI E    LS  +R+  
Sbjct: 416 PFKKHFIREVTREDIIHLLEIKMQRILKFNKDKADDVIIKIKAEIAEIDKDLSEMTRVT- 474

Query: 500 IIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
              +    +K +      R+T I      +  +     E + +  S              
Sbjct: 475 --IEWFKHLKGKYGKEHIRKTEIKNFDTIIASKVIDANEKLYIDRSS------------- 519

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  G  G  ++  +FV +    S    ++ F   G     +V  
Sbjct: 520 -------GFIGTGLKKSEFVQN---CSDLDDIIIFYRDGKYKVIRVAD 557


>gi|117654279|gb|ABK55570.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654283|gb|ABK55572.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654285|gb|ABK55573.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654287|gb|ABK55574.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654291|gb|ABK55576.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654307|gb|ABK55584.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654309|gb|ABK55585.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654341|gb|ABK55601.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 223

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|153840091|ref|ZP_01992758.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746311|gb|EDM57376.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 286

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 113/268 (42%), Positives = 169/268 (63%), Gaps = 14/268 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     A
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGM
Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-----RTGIKNA- 240
           AT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I+      +  I  A 
Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISLKRKLKRSIATAV 241

Query: 241 -------YATGRGSIVIRGVSHIEKTSG 261
                  Y   +G        HI+  + 
Sbjct: 242 AASRCVQYGIKKGQTSSSRRFHIKCLAR 269


>gi|117654211|gb|ABK55536.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 137/223 (61%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y++  RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESHVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|215480327|gb|ACJ67508.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 133/296 (44%), Positives = 190/296 (64%), Gaps = 26/296 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
            LGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 2   FLGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 61

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 62  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 121

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 122 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 181

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 182 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 215

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 216 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 271


>gi|23429757|gb|AAN23864.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 153/194 (78%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L +GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLADGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|317478494|ref|ZP_07937654.1| topoisomerase IV [Bacteroides sp. 4_1_36]
 gi|316905383|gb|EFV27177.1| topoisomerase IV [Bacteroides sp. 4_1_36]
          Length = 893

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 154/685 (22%), Positives = 273/685 (39%), Gaps = 78/685 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             + ++  I    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADAKDANIKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRME--- 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ + N +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASISYLHNEEFKL--------YPDFQTGGSI-----DVSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  S IE    D + + + EIPY    A++ + I +   + +I       ++    
Sbjct: 244 GGAIRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGKIKI--RKVEDLTSG 299

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+  V    
Sbjct: 300 SVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTVSDVLRKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +  +    +  +  H      I +       RI +     +            A +
Sbjct: 360 ALLRQELEIRKGEILESLHFASLEKIFIEE-----RIYKDKEFEQ------------AKN 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +    + ID+            +++     ++E+++AR+     D     +  +  +I+E
Sbjct: 403 MDAACEHIDERLTPYYPTFIREVTKEDILRLMEIKMARILKFNSDKAEELIARMKKDIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L++   ++         +KD+     PR T +         +     E + +    
Sbjct: 463 IDRHLAN---IVEYTVDWFRMLKDKYGKDFPRHTELRNFDTIEATKVIEANEKLYINR-- 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
                              +G  G  ++ ++F+ +    S    V+ F   G      V 
Sbjct: 518 ------------------EEGFIGTGLKKDEFIGN---CSPIDDVIIFFRDGKYIITPV- 555

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +     NI   N    I  +  + + +   + +     T     R   ++ 
Sbjct: 556 --ADKKFVGKNILYANIFKKNDKRTIYNV-CYRDGKEGTSYIKRFAVTSVVRDREYDVTQ 612

Query: 665 FIQINRSGKIAMKLDSRDEILSVET 689
               +R        +   EI+ V  
Sbjct: 613 GTPDSRITYFTANPNGEAEIIKVTL 637


>gi|260591221|ref|ZP_05856679.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
 gi|260537086|gb|EEX19703.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
          Length = 910

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 147/617 (23%), Positives = 260/617 (42%), Gaps = 76/617 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ 
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDIC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  V  + N D  L         PDFPTG  I         Y  G+   V++  + IE  
Sbjct: 210 EAAVQYLRNEDFHL--------YPDFPTGGSI-----DAAKYNDGQRGGVLKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ E+P+     ++ E I + V + +I       ++       + + L  G S
Sbjct: 255 KLDNKTLVIREVPFTKTANSLQESITKAVEKGKI--KVRKVEDMTASEVEIQLHLTPGTS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP+  T+  +L+  V   + ++    +   ++
Sbjct: 313 SDKTIDALYAFTDCEINISPNCCVIEDNKPKFLTISDVLRNSVEHTKALLKMELEIRKHE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++         ++  +    RI +                  A ++ +++  +D    
Sbjct: 373 LEEQL-----FYNSLERIFIEERIYKERKFE------------TARNLDEVVAFVDAKLD 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++      +LE+++ R+    +D     +  +  EI E    LS    ++ 
Sbjct: 416 PYKKTFIREVTREDILRLLEIKMQRILKFNKDKADELIQKIKAEIAEIDKDLS---EMVR 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +  +    +K++     PR T I      +  +     E + +                 
Sbjct: 473 VTIEWFTHLKEKYGKDHPRHTEIKSFDTIVAAKVVDANEKLYID---------------- 516

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                  G  G  ++  +FV +    S    V+ F   G     KV R+       +G  
Sbjct: 517 ----SKAGFIGTGLKKAEFVQN---CSDLDDVIIFYRDGKY---KVIRIAEKVFVGKGVI 566

Query: 618 LINILSLNQGERITTIM 634
            + +   N    I  ++
Sbjct: 567 YLQVFKKNDKRTIYNVV 583


>gi|117654265|gb|ABK55563.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654269|gb|ABK55565.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654271|gb|ABK55566.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654273|gb|ABK55567.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654275|gb|ABK55568.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654277|gb|ABK55569.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654311|gb|ABK55586.1| DNA gyrase subunit A [Bacillus sp. 3EC2A3]
          Length = 223

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|313204243|ref|YP_004042900.1| DNA topoisomerase iv subunit a [Paludibacter propionicigenes WB4]
 gi|312443559|gb|ADQ79915.1| DNA topoisomerase IV subunit A [Paludibacter propionicigenes WB4]
          Length = 951

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 150/588 (25%), Positives = 249/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+PD+ DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 49  LSGMYQNWFLDYASYVILERAVPDIYDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 105

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 106 TMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 160

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+ + I  HN  E++
Sbjct: 161 --LETVFNPKTTEWKSSYDGRNKEPIALPVKFPLLLAQGVEGIAVGLNSKILPHNFNELL 218

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D CVA +           + I  PDF TG  I       + Y  G     ++  + I   
Sbjct: 219 DACVANLKGE--------DFILYPDFQTGGSI-----DVSRYNDGERGGAVKIRAKI--G 263

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + + +TEIP+  N + ++E I +   + +I       D++      +++ L  G+S
Sbjct: 264 KIDNKTLAITEIPFGTNTSKLIESIIKASDKGKIKI--RKVDDNTSANVEILVHLLPGSS 321

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   ++  KP    +  +L+             T  LL  
Sbjct: 322 SDKTIDALYAFTDCELSISPNCCVIHDNKPRFCGVSEMLRISCQH--------TMDLLQA 373

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +     +   +   +L+++    R   +         +   +++   ++I  ID    
Sbjct: 374 ELEIQRAELQEQLFFTSLEKIFIENRIYKD---------KGFEDSTSQDEVIVHIDKRLE 424

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    +       +LE+++ R+T    D     L S+   I E    L+    L+ 
Sbjct: 425 PFKKDFIREIVREDFIKLLEIKMMRITKFDSDKANETLISIQKRIDEINHHLAH---LVD 481

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                   +K +     PR T I      +  +     E + V                 
Sbjct: 482 YTISWYEGLKAKYGKDHPRLTEIRNFETIVASKVVEANEKLYVNY--------------- 526

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  +R ++FV +    S    ++ F   G     KV  
Sbjct: 527 -----DEGFIGTSLRKDEFVCN---CSDIDDIIIFFKDGKYKIVKVAD 566


>gi|215480317|gb|ACJ67503.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 133/296 (44%), Positives = 191/296 (64%), Gaps = 26/296 (8%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 2   ILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 61

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T++Q+ F +N++AL   +P+
Sbjct: 62  KKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAVQTSFGINLLALVDGQPK 121

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   
Sbjct: 122 VLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTA 181

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  L+++                            L+E Q +AIL++RL RLTGL R
Sbjct: 182 EIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLER 215

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           + I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 216 EKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 271


>gi|313192117|emb|CBX19918.1| gyrase A [Clostridium perfringens]
          Length = 249

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 139/250 (55%), Positives = 192/250 (76%), Gaps = 1/250 (0%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDN
Sbjct: 1   NTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDN 60

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE     R +I+V
Sbjct: 61  PELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIE-EENGRHKIIV 119

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY
Sbjct: 120 TELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLY 179

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           ++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L 
Sbjct: 180 KHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILE 239

Query: 389 GLAIAVANLD 398
           GL IA+ N+D
Sbjct: 240 GLIIALDNID 249


>gi|116486981|emb|CAJ38776.1| DNA gyrase subunit A [Mesorhizobium sp. Ca004]
          Length = 212

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 148/212 (69%), Positives = 173/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|117654345|gb|ABK55603.1| DNA gyrase subunit A [Bacillus halodurans]
          Length = 222

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 174/223 (78%), Gaps = 1/223 (0%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+ K +  L+ D+ KD
Sbjct: 1   DSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEARMSKISMELVRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPHQLGEVIDGVLALSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI +R  + IE     +++I+V 
Sbjct: 121 DISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAKTEIE-EHHGKQRIIVH 179

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 180 EIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVI 222


>gi|117654343|gb|ABK55602.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 223

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 137/223 (61%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVI 223


>gi|3548910|gb|AAC68571.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 196

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 156/196 (79%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TRVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A +DN DI 
Sbjct: 181 EVINGCLAYVDNEDIS 196


>gi|225164319|ref|ZP_03726587.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801081|gb|EEG19409.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 732

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 155/705 (21%), Positives = 277/705 (39%), Gaps = 104/705 (14%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +I +  E  K   +  +    +N +L YA  VIL RA+P + DGLKPV RRIL  + +  
Sbjct: 64  VIPAAPEPPKNNDNAPLAHAYKNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTLWEKD 123

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDGD 123
              + ++ K A I G  M  YHPHG+A+I  AL  +AQ    R  LIE QGNF  ++ GD
Sbjct: 124 ---DGRFHKVANIVGATMA-YHPHGDASIGAALVAIAQ----RGWLIEPQGNFGNALTGD 175

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RY E RL   A  +L      T  ++ +YDG  +EPV L A++P  L+ G  GIA
Sbjct: 176 DAAAPRYIEARLTPFAREVL--FNPKTTPWQLSYDGRAKEPVTLPAKFPVSLLEGADGIA 233

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VG+AT I  HN  ++    +  ++     +         PDF +G +        + Y  
Sbjct: 234 VGLATKILPHNFNDLCRAAINHLNGKKFRI--------VPDFASGGI-----ADFSEYND 280

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G     I+  + IE     +  + +TE+PY     +++E I     + +I       D++
Sbjct: 281 GERGGKIKIRAKIEI--RSKYLLAITELPYGATTVSLIESIVSANNKGKIKI--RHVDDN 336

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---------------GYK 348
                 +++ L +G+ A+ ++NQLY +T  Q   S     +                  +
Sbjct: 337 TADQVEILVHLPQGSDAEQVINQLYVFTDCQISISPAACVIEQVPARTGDDGREIPAQDR 396

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P    +  IL+  V    +++ +  +  L +   + H      I +       RI R   
Sbjct: 397 PIFTGVSEILRRSVDKTVQLLKQELEIKLGELEQQWHWDSLERIFIEE-----RIYRRIE 451

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           N +T    L +           +                 ++E     + E+R+ R++  
Sbjct: 452 NSKTWENVLQEIRDGLKPFVKKLRR--------------EITEDDITRLTEIRIKRISAY 497

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R      +  +  +IK+    L+    ++         ++++    R+ R     ++  
Sbjct: 498 NRFKADEAIKGIEADIKQVKHDLAH---IIPYTIAWFERLQEKYGKGRKRRTTYDEIE-- 552

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                +    VV  +   YV R             +G  G+  R  +FVT     +    
Sbjct: 553 ----QISAAQVVAANQRLYVNR------------DEGFVGLNWRQHEFVT---ECTILDD 593

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           VL   + G     KV ++        G+ +I+            I+P   D+  ++ +Y 
Sbjct: 594 VLCIMADG---TMKVAKVADKVF--MGRDIIH----------VAILPKDGDKKFYSLIYQ 638

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
              +     +R ++     + R     +      +++ ++    E
Sbjct: 639 DKESGKAFAKRFQIGG---VTREKLYPLTASEGSKVVFLDVADDE 680


>gi|300777684|ref|ZP_07087542.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
 gi|300503194|gb|EFK34334.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
          Length = 863

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 132/518 (25%), Positives = 235/518 (45%), Gaps = 52/518 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++++E   +G +   ++   ++ +L YA  VIL RAIP + DGLKPV RRI+  M ++  
Sbjct: 1   MTTEEYSHEGESLKKVSGLYKDWFLDYASYVILDRAIPSIYDGLKPVQRRIMHSMRELE- 59

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDP 124
             + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD 
Sbjct: 60  --DGRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNIYTGDS 112

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY E RL   A  L       T ++  +YDG   EP+ L  ++P +L  G  GI V
Sbjct: 113 AAAARYIEARLTPFA--LEVVFNPKTTEWTKSYDGRNNEPIDLPVKFPLLLAQGVEGIGV 170

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T I  HN  E+++  VA +     +L         PDF T   +       + Y  G
Sbjct: 171 GLSTKILPHNFNELINASVAYLKGKKFEL--------YPDFLTAGYL-----DVSEYNDG 217

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                +R  + I  T  D+  +V++E+PY      +++ I +   + +I       +++ 
Sbjct: 218 HRGGKVRARAKI--TQTDKHTLVISELPYSKTTTDLIDSILKANEKGKIK--IKKIEDNT 273

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                ++I +    S D  ++ LY +T  Q   S N   + G KP    +  ILK     
Sbjct: 274 SDKVEILIHIHNDVSPDKTIDALYAFTDCQVTISPNACVIVGDKPMFMNVSEILKMNTDH 333

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
              ++ +  +  L++ ++  H         ++L+ +    R   + E  +          
Sbjct: 334 TVSLLKKELEIELHELQESWH--------FSSLERIFIENRIYHDIEEVKT--------- 376

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              +D++  ID             ++E     + E+R+ R++    D  +  + SL  +I
Sbjct: 377 --WEDVLKTIDAGLKPHTKHLLRAVTEEDILKLTEIRIKRISRFDLDKFKENIASLEGKI 434

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTP--RRTRI 520
           ++    L +   L+       L+++ +      RRT +
Sbjct: 435 EQVKYNLEN---LIAYAIDYYLNIQKKYGKDKQRRTEL 469


>gi|3548912|gb|AAC68572.1| DNA gyrase A [Enterobacter cloacae]
          Length = 196

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 119/196 (60%), Positives = 157/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNIT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ID+ DI 
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|255036406|ref|YP_003087027.1| DNA topoisomerase IV subunit A [Dyadobacter fermentans DSM 18053]
 gi|254949162|gb|ACT93862.1| DNA topoisomerase (ATP-hydrolyzing) [Dyadobacter fermentans DSM
           18053]
          Length = 914

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 142/606 (23%), Positives = 257/606 (42%), Gaps = 75/606 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  + D E+      + I+   +N +L YA  VIL RA+P + DGLKPV RRI   M
Sbjct: 1   MDENGAAPDVEDSGLHDKLPISGLYENWFLDYASYVILERAVPAIEDGLKPVQRRI---M 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + ++ K A + G  M  YHPHG+A+IYDA+  + Q    + LL + QGN+G +
Sbjct: 58  HALNEMDDGRFNKVANVVGSSMQ-YHPHGDASIYDAIVNIGQ----KELLFDTQGNWGDI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL +    ++     DT +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 RTGDGAAAARYIEVRLSRFGKDVV--FNDDTTEWQLSYDGRKREPITLPVKFPLLLTLGV 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  + ++   ++ +         PDF TG ++       +
Sbjct: 171 EGIAVGLSTKILPHNFCELIEASIGILQGKEVTI--------YPDFLTGGLV-----DVS 217

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + IE+   D++ +V+ +IP+     +++E I +     +I      
Sbjct: 218 NYNDGHRGGKVRVRAKIEEE--DKKMLVIRDIPFGTTTTSLIESIIKANDAGKIKIKK-- 273

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             ++      + + L  G S D+ ++ LY +T  +   S N   +   KP    +  ILK
Sbjct: 274 VVDNTAADVEIQVHLAPGVSPDITMDALYAFTECEVSISPNACIIIAEKPHFVGVTDILK 333

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                      ++T +LL +  +   + +   I   +L+++    R   + E        
Sbjct: 334 YN--------TQQTVHLLQRELEIKRLELLEKILYGSLEKIFIENRIYRDIEE------- 378

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                   + +I  ID             +++    A+ E+R+ R++          +  
Sbjct: 379 ----CETFEAVIRTIDKGLEPFKPQFYREITDDDIVALTEIRIKRISKYDSFKADELMRK 434

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRED 537
              ++ E  D L+  +R      +    +  +      RRT I             +  +
Sbjct: 435 WEADLAETEDNLAHITR---FAIEYFRDLLKKYGKNRGRRTEIRA--------FNQIAAN 483

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V   +   YV R             +G  G  ++ +++V D    S    ++ F   G 
Sbjct: 484 IVAANNQKLYVNR------------AEGFVGYGLKKDEYVMD---CSDIDDIIVFRGDGR 528

Query: 598 VYKEKV 603
               KV
Sbjct: 529 CVVTKV 534


>gi|10717007|gb|AAG22004.1|AF282315_1 gyrase subunit A [Yersinia pseudotuberculosis]
          Length = 178

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 116/178 (65%), Positives = 144/178 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 121 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 178


>gi|117654289|gb|ABK55575.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  247 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGXGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVN A ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNNAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|325104895|ref|YP_004274549.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
 gi|324973743|gb|ADY52727.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
          Length = 898

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 168/688 (24%), Positives = 287/688 (41%), Gaps = 85/688 (12%)

Query: 10  EEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           EE E  I    + I+   +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    
Sbjct: 2   EENEDEILHNVIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD--- 58

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPA 126
           + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  A
Sbjct: 59  DGRFNKVANVIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGDPITGDSAA 113

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L      DT D++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 114 AARYIEGRLSKFA--LEVVFNPDTTDWQLSYDGRNREPVTLPVKFPLLLAQGAEGIAVGL 171

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT +  HN  E++D  + V+     ++         PDFPTG +        + Y  G+ 
Sbjct: 172 ATKVMPHNFIELIDASIEVLRGNRPNI--------LPDFPTGGL-----ADFSQYNEGQR 218

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  + I +   D++ +V++EIPY      +++ I  +    +        +++  +
Sbjct: 219 GGKIRVRAKISEL--DKKTLVISEIPYSTTTTGLIDSI--IAANDKGKIKIKKIEDNTAK 274

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +VI L  G S D+ ++ LY +T+ ++  S N   +   KP   ++  IL     +  
Sbjct: 275 NVEIVIHLAPGISPDLTIDALYAFTACETSISPNTCVIKKDKPHFMSVNDILIESTNY-- 332

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
                 TK LL +  +     +   I  ++L ++        NPE           N+S+
Sbjct: 333 ------TKALLKRELEIKLHDLQEKIFFSSLLKIFIQEGMYKNPE---------YENSSN 377

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            ++++ ++        S     +     + +++  ++ +T         ++ +L  +I  
Sbjct: 378 FEEVVKVLHRLFDPFKSSLYREIEAEDFKKLIDKPMSSITRFDVKKADEQMAALEKDITL 437

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L     L        L +KD+      R+T I            +           
Sbjct: 438 VKKNLRH---LTDFAIDYFLRLKDKFGKGRERKTEIRAFDRVEAAHVALANVKF------ 488

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             YV R              G  G  ++ +++   LF  S    ++ F   G      V 
Sbjct: 489 --YVNRED------------GFVGTGLKKDEY---LFDCSDIDDIIVFREDG---SFIVT 528

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++   +   +G   + I   N     TT      D  S       FA   G V R+K  D
Sbjct: 529 KVQDKTFVGKGILHVGIFKKNDDR--TTYNMIYRDGKSGTAYIKRFA--VGGVTRDKEYD 584

Query: 665 FIQINRSGKI---AMKLDSRDEILSVET 689
             +  +  K+       +   E++++  
Sbjct: 585 LTKGTKGSKVLYFTANPNGEAEVVNIAL 612


>gi|295092033|emb|CBK78140.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 257

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 111/218 (50%), Positives = 151/218 (69%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +       TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLEKFAEEVYLKDLDKTVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           NLGEVVD   A IDNP++  + L+  + GPDFPTG +I
Sbjct: 183 NLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGII 220


>gi|117654167|gb|ABK55514.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654169|gb|ABK55515.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654171|gb|ABK55516.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654173|gb|ABK55517.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654175|gb|ABK55518.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654177|gb|ABK55519.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654179|gb|ABK55520.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654181|gb|ABK55521.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654185|gb|ABK55523.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654187|gb|ABK55524.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  247 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|260172283|ref|ZP_05758695.1| DNA topoisomerase IV subunit A [Bacteroides sp. D2]
 gi|315920589|ref|ZP_07916829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694464|gb|EFS31299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 881

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 289/739 (39%), Gaps = 87/739 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  ++ +    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    
Sbjct: 17  PADTRDENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ +           E    PDF TG  I         Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRGE--------EFQLYPDFQTGGSI-----DVAKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  + I     D + + +TEIPY    + +++ I + V + +I       D++   
Sbjct: 233 GGAVKVRAKI--NKIDNKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK       
Sbjct: 289 NVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPHFLTVSKVLKKSADNTM 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +++ +  +    +  +  H      I +       +    S + + A   + +R      
Sbjct: 349 DLLKQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTP--- 405

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +++     ++E+++ R+     D     +  +  EI E
Sbjct: 406 --------------YYPTFIREVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              I +  + ++         +K++     PR T +             +    VV  + 
Sbjct: 452 ---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRHTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV      S    V+ F   G      V 
Sbjct: 501 KLYINR------------EEGFIGTTLKKDEFVA---CCSDIDDVIIFFRDGKYIVTPV- 544

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +    +N+   N    I  +  + + +     +     T     R   ++ 
Sbjct: 545 --ADKKFVGKNVLYVNVFKKNDKRTIYNV-AYRDGKEGTTYVKRFAVTSVVRDREYDVTL 601

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVF 716
               +R    +   +   EI+ V             E+D    +  G+  R  I   R+ 
Sbjct: 602 GTPDSRITYFSANPNGEAEIIKVTLKPNPRVRRIIFEHDFSEVSIKGRQARGIIL-TRLP 660

Query: 717 AGRNSVGVRGISLAKGDQV 735
             + S+  +G S   G +V
Sbjct: 661 VHKISLKQKGGSTLGGRKV 679


>gi|23429770|gb|AAN23865.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF + ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAVNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|117654267|gb|ABK55564.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+  NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYXDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTXSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|254444676|ref|ZP_05058152.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258984|gb|EDY83292.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 679

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 163/698 (23%), Positives = 275/698 (39%), Gaps = 89/698 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +  ++ ++ EE+ G     + +  QN +L YA  VIL RA+P L DGLKPV RRI   M 
Sbjct: 19  STELVPAETEEKSGNAKAPLANSYQNWFLEYASYVILDRAVPALLDGLKPVQRRI---MH 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSV 120
            +    + +Y K A + G  M +YHPHG+A+IY A+  M Q    R LLI+ QGN+  ++
Sbjct: 76  SLKELDDGRYNKVANVVGHSM-RYHPHGDASIYSAMVGMGQ----RNLLIDTQGNWGNTL 130

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL   A  ++      T  ++ +YDG  +EP  L  ++P +L  G  
Sbjct: 131 TGDGAAAARYIEARLSPFARDVV--FNPKTTKWQLSYDGRNKEPTNLPVKFPLLLSEGAE 188

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+A  I  HN  E++D  +  ++          E    PDF TG V          
Sbjct: 189 GIAVGLACKILPHNFNEIIDAAIYHLNGD--------EFELYPDFETGGV-----ADFTN 235

Query: 241 YATG--RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y  G   G +++R V  I      + QIV+ EIP+     ++++ I     + +I     
Sbjct: 236 YNDGLRGGRVLVRAVFDI----VSKYQIVIREIPFGCTTGSLIDSILSANSKGKIK--IK 289

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             +++  +   ++I L  G+ A   ++ LY +T  Q   + N   +    P    +  +L
Sbjct: 290 KIEDNTSEKAEILITLPPGSDAQATIDALYVFTDCQVSIAPNACIIEDDTPLFIGVSEML 349

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +      + ++    +  L +  ++ H      I +       RI R     ET    + 
Sbjct: 350 RRSADNVKALLKLELEIKLAELEEKWHFDSLERIFIEE-----RIYRRIEECETWDAVIS 404

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +        K  +                 +++     + E+R+ R++        +E+ 
Sbjct: 405 EIHKGLDPFKPTLKR--------------EVTDEDVARLTEIRIKRISKYNSFKANDEIK 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRE 536
               EI+     L S   L         ++K++      RRTRI         E  +  E
Sbjct: 451 KTEKEIRATKRNLKS---LTKFATAYFENLKEKYGKGRERRTRIESFETIKAAEVALPTE 507

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V                        G  G  ++ ++F   L   S    V+ FSS G
Sbjct: 508 KLFVNR--------------------EDGFIGFSLKKDEF---LCECSQLDDVIAFSSDG 544

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
                +V R+        GK + ++    +G+  T       D +   +    F      
Sbjct: 545 ---TFRVSRVADKVF--MGKDIQHVAVWKKGDEETIYDMVYRDGARGASFVKRFIVNA-- 597

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCT 691
           V R+K+ D  +  +  K+       D     + V    
Sbjct: 598 VTRDKVYDLTKGTKGSKVHYFKANPDGSTRPIKVRLTP 635


>gi|117654295|gb|ABK55578.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654297|gb|ABK55579.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654299|gb|ABK55580.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654303|gb|ABK55582.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|117654239|gb|ABK55550.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654241|gb|ABK55551.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654243|gb|ABK55552.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654245|gb|ABK55553.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654247|gb|ABK55554.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654249|gb|ABK55555.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654251|gb|ABK55556.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654253|gb|ABK55557.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654293|gb|ABK55577.1| DNA gyrase subunit A [Bacillus sp. 3EC1b2]
          Length = 223

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|293370569|ref|ZP_06617121.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298481614|ref|ZP_06999805.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|299147250|ref|ZP_07040315.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
 gi|292634303|gb|EFF52840.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298272155|gb|EFI13725.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|298514528|gb|EFI38412.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
          Length = 881

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 289/739 (39%), Gaps = 87/739 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  ++ +    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    
Sbjct: 17  PADTRDENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ +           E    PDF TG  I         Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRGE--------EFQLYPDFQTGGSI-----DVAKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  + I     D + + +TEIPY    + +++ I + V + +I       D++   
Sbjct: 233 GGAVKVRAKI--NKIDNKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK       
Sbjct: 289 NVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPHFLTVSKVLKKSADNTM 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +++ +  +    +  +  H      I +       +    S + + A   + +R      
Sbjct: 349 DLLKQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTP--- 405

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +++     ++E+++ R+     D     +  +  EI E
Sbjct: 406 --------------YYPTFIREVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              I +  + ++         +K++     PR T +             +    VV  + 
Sbjct: 452 ---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRHTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV      S    V+ F   G      V 
Sbjct: 501 KLYINR------------EEGFIGTTLKKDEFVA---CCSDIDDVIIFFRDGKYIVTPV- 544

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +    +N+   N    I  +  + + +     +     T     R   ++ 
Sbjct: 545 --ADKKFVGKNVLYVNVFKKNDKRTIYNV-AYRDGKEGTTYVKRFAVTSVVRDREYDVTL 601

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVF 716
               +R    +   +   EI+ V             E+D    +  G+  R  I   R+ 
Sbjct: 602 GTPDSRITYFSANPNGEAEIIKVTLKPNPRVRRIIFEHDFSEVSIKGRQARGIIL-TRLP 660

Query: 717 AGRNSVGVRGISLAKGDQV 735
             + S+  +G S   G +V
Sbjct: 661 VHKISLKQKGGSTLGGRKV 679


>gi|154493432|ref|ZP_02032752.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
 gi|154086642|gb|EDN85687.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 144/588 (24%), Positives = 251/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   Q+ +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 58  LSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 114

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 115 TMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 169

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E++
Sbjct: 170 --LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELL 227

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  VA +   +  L         PDF TG  I       + Y  G     ++  + I  T
Sbjct: 228 DASVAYLRGEEFTL--------YPDFQTGGYI-----DVSKYNDGERGGSVKVRAKI--T 272

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V++EIPY    + ++E I +   + +I       D++  +   +++ L  G S
Sbjct: 273 KLDNKTLVISEIPYGKTTSTLIESILKANDKGKIKIKK--VDDNTARNVEILVHLAPGVS 330

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +LK             T +LL  
Sbjct: 331 SDKTIDALYAFTDCEISISPNCCVIMDNKPHFLTVSDVLKHS--------TDDTLHLLRT 382

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +     +  ++  A+L+++    R   + E              + KD+ + I     
Sbjct: 383 ELEIQKGELEESLFFASLEKIFIEERIYKDKE------------FEEAKDMDEAIAHIDR 430

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            +      ++ EV    IL+L   ++  + + +      ++    ++   I    + ++ 
Sbjct: 431 RLDLFKPHFIREVTREDILKLMEIKMGRILKFNTDKCNATIAQYKEDIAKIDDHLAHIVD 490

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                 + +K++     PR T +         +     E + +                 
Sbjct: 491 YTADWFMMLKEKYGKNYPRMTEVRNFDTIEATKVVEANEKLYINR--------------- 535

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++FV +    S    ++ F   G     KV  
Sbjct: 536 -----AEGFIGTGLKKDEFVCN---CSDIDDIILFYRNGTYKVVKVSE 575


>gi|281356735|ref|ZP_06243226.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316862|gb|EFB00885.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
          Length = 877

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 144/531 (27%), Positives = 227/531 (42%), Gaps = 56/531 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
               M  ++L YA  VI  RAIPD+ DGLKPV RR+L+ + Q+   ++ +  K A + G 
Sbjct: 48  FRTMMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGN 104

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHGNA+I DAL  +    + +   I  QGNFG++  G P AA RY EC L    
Sbjct: 105 TMH-YHPHGNASIEDALVVL----ANKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLG 159

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H +L     D  +F   YDG   EPV L A+ P++L+ G  GIAVGMAT I  HN  E++
Sbjct: 160 HEVL--FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELL 217

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +AV+           E    PDF  G ++  R      Y  G G I +R    IE  
Sbjct: 218 EAEIAVLRGE--------EFELYPDFQQGGLMDVRE-----YNDGNGKITLRA--KIEIV 262

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D   +++ EIP   +   ++  I +   + +I   +   ++       + +   RG  
Sbjct: 263 GRD---LIIREIPATTSTETLVASIEKAAEKNKIKISS--VNDYTTDKVEIKVVPTRGYD 317

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +  +  LY YT      SVNM  +   +P + ++  +L+       E + R  +  L K
Sbjct: 318 PEKTMQGLYMYTDCSVSISVNMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAK 377

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             D  H      I   N     RI +     ++ + E  +     +  + L+        
Sbjct: 378 QEDLFHAKTLAQIFFEN-----RIYKKIEECKSEKEEYTEVHAGLAPFRHLLRR------ 426

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +++     +L L + R++    +  + EL  +  +++E    L S   L  
Sbjct: 427 --------DVTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKNLGS---LKK 475

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
                L  + D+     PRRT I E    ++  +  +    V      GYV
Sbjct: 476 YAINYLRKLLDKYGKDFPRRTEI-EHFEKIDRREAALNNIKVGWDRKNGYV 525


>gi|10717005|gb|AAG22003.1|AF282314_1 gyrase subunit A [Yersinia pestis]
          Length = 177

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 115/177 (64%), Positives = 143/177 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 177


>gi|49425508|gb|AAT66069.1| DNA gyrase A [Shigella dysenteriae]
          Length = 193

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 152/193 (78%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           +A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+T
Sbjct: 61  SAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKET 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID+ D
Sbjct: 121 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDDED 180

Query: 211 IDLDALMEIIRGP 223
           I ++ LME I GP
Sbjct: 181 ISIEGLMEHIPGP 193


>gi|213963463|ref|ZP_03391717.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
 gi|213953871|gb|EEB65199.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
          Length = 864

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 184/878 (20%), Positives = 345/878 (39%), Gaps = 135/878 (15%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+   +   +   I  + IT   Q+ +L YA  VIL RA+P + DG KPV RRI   M
Sbjct: 1   MEENTSQNTASQGDSI--IKITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRI---M 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 56  HSLKELDDGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNI 110

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  L         +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 LTGDDAAAPRYIEARLSKFA--LDVVFSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGT 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  +A +     +L         PDFPT  ++       +
Sbjct: 169 EGIAVGLSTKILPHNFIELIEASIAYLKGKSFEL--------YPDFPTAGIM-----DVS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I +   D+  + +TEIP+     ++++ I +   + +I      
Sbjct: 216 GYNDGARGGRVRVRAKISQL--DKSTLCITEIPFTTTTTSLIDSILKANEKGKIKIKK-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D++      +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 272 VDDNTAANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RT  LL +  +     + +    A+L+++             R E+  
Sbjct: 332 --------RSTDRTVNLLKQELEIELSELEMQWHNASLEKIF-----------IREEMYI 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
              N +D + L + +         D    +++     + ++ + R+T          +  
Sbjct: 373 DFKNYTDRESLYEYLYKRFEPFKKDLLREITDDDLAKLTQIPMIRITRFDSYKADENILK 432

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRED 537
           +  +I+E  + L++   L+         +K        R+T I          D I    
Sbjct: 433 IEADIEEVKNHLAN---LIDYAIAHFERLKKTYSKGRERKTEI-------RVFDTIEATK 482

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VV  + L YV R             +G  G  +R +++V D    S    V+ F+  G 
Sbjct: 483 VVVRNTKL-YVNR------------AEGFVGTGLRKDEYVGD---CSDIDDVIVFTESGA 526

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y  KV                          I  +  F +D+           T +  +
Sbjct: 527 MYVTKVADKQYIEKN-----------------IIHVAVFKKDDKR---------TVYNMI 560

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK--LGQCVRFPISAIRV 715
            ++  + F  I R     +  D + E++      +E+ +L  T    G+     ++  ++
Sbjct: 561 YKDGQTGFSYIKRFNVTGITRDKKYELI---PQHKESRVLYFTANPNGEAEVVTVNLRQL 617

Query: 716 FAGRNSVGVRGI--SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
              R          +L KG  V    +  +A    + +   +  +  ++           
Sbjct: 618 GTLRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVSTLKPRK----------- 666

Query: 774 SLKNDSSVEGNISEERCQELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSG------- 824
            +  D  V+   +EER   L     +  +L ++++G  K T   +  +   +        
Sbjct: 667 -IWFDDIVKRLNTEERGTLLGAFKGDDRMLLITKEGVVK-TIIPELSLHFENNIAVMEKW 724

Query: 825 ---KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
              K I         E   +      N+N + +++++ 
Sbjct: 725 VPEKPISVIYYDGEKERVFVKRFVVENENREELVITEH 762


>gi|213864968|ref|ZP_03387087.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 295

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 147/295 (49%), Positives = 197/295 (66%), Gaps = 9/295 (3%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG 
Sbjct: 1   TNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 60

Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           + IR  + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ 
Sbjct: 61  VYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKD 120

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R 
Sbjct: 121 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRR 180

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  +
Sbjct: 181 EVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGN 240

Query: 427 IKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +  +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + +
Sbjct: 241 VAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 295


>gi|46019102|emb|CAE52015.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019122|emb|CAE52025.1| gyrase subunit A [Bacillus sonorensis]
          Length = 213

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 134/213 (62%), Positives = 172/213 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
             +  I++TEIPYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKI 213


>gi|330996113|ref|ZP_08320006.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573884|gb|EGG55465.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 911

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 133/537 (24%), Positives = 230/537 (42%), Gaps = 51/537 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +      IT   ++   QN +L YA  VIL RA+P + DG KPV RRIL  M +M   
Sbjct: 27  QPETNPHDSITH-HLSGMYQNWFLDYASYVILERAVPHINDGFKPVQRRILHSMKRMD-- 83

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 84  -DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSA 137

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG
Sbjct: 138 AAPRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVG 195

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           +++ I  HNL E+ D  V  +      L         PDF TG  I       + Y  G 
Sbjct: 196 LSSKILPHNLNEICDAAVNYLHGEPFQL--------YPDFLTGGSI-----DVSKYNDGG 242

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
              V++  + I  T  D + + + EIPY      +++ I + + + +I       +++  
Sbjct: 243 RGGVVKVRAKI--TKIDNKTLAIREIPYGKTTTTLIDSILKAIEKGKI--KVRKVEDNTA 298

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               +++ L  G S+D  L+ LY +T  +   S N   ++  KP   T+  +LK  V   
Sbjct: 299 AEVEILVHLTPGVSSDKALDALYAFTDCEVSISPNCCVIDDKKPCFLTVSEVLKRSVDNT 358

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             ++ +       + ++  H      I +       R    + + + A   + +R     
Sbjct: 359 LGLLRKELLIRKGELQESLHFASLEKIFIEERIYKDRNFEQAKDMDAACTHIDERLTP-- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  +++     ++++++AR+    +D   + +  +  EI 
Sbjct: 417 ---------------FYPQMIREVTQDDILKLMDIKMARILKFNKDKANDAIARMKDEIA 461

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
                L +   ++ +       +K +     PR T +      +  +     E + +
Sbjct: 462 RIDRDLDN---MVEVTCNWFRMLKAKYGNEHPRHTELRNFDTIVATKVVEANEKLYI 515


>gi|90969022|gb|ABE02581.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D  L+ +M+ I+GP
Sbjct: 181 DSKDASLEEIMQFIKGP 197


>gi|321116498|dbj|BAJ72201.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 194

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/193 (60%), Positives = 154/193 (79%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           ++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G
Sbjct: 1   NLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A
Sbjct: 61  DVMGKYHPHGDSSIYAAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL E +
Sbjct: 121 LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESI 180

Query: 200 DGCVAVIDNPDID 212
           D    V+++PD  
Sbjct: 181 DAVKMVMEHPDCT 193


>gi|301312343|ref|ZP_07218260.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
 gi|300829765|gb|EFK60418.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
          Length = 911

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 281/680 (41%), Gaps = 77/680 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +           E    PDF TG  I         Y  G     ++
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGGSI-----DIAKYNDGERGGSVK 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I     D + +V++EIPY    + ++E I +   + +I       D++  +   ++
Sbjct: 266 VRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVEIL 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+            
Sbjct: 322 VHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHS--------TD 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT  LL +           A+  A+L+++    R   +PE           NA ++ + I
Sbjct: 374 RTLELLREELKIQKQEQEEALFFASLEKIFIEERIYKDPE---------FENAKNMDEAI 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
             ID             ++      ++E+++ R+     D     +     +I +  D L
Sbjct: 425 SHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL 484

Query: 492 SSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                ++         +K++     PR T I         +     E +        Y+ 
Sbjct: 485 ---EHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------YIN 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +G  G+ ++ ++F+ +    S    V+ F   G     K+ ++   
Sbjct: 534 RQ------------EGFIGMGLKKDEFICN---CSDIDDVIIFYRNG---TYKIVKVADK 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +    +N+   N    I  ++ + + +  +N +     T     R   L+   + +
Sbjct: 576 IFIGKDILYVNVFKRNDNRTIYNVI-YRDGKFGYNYIKRFAVTGATRDREYDLTKGTENS 634

Query: 670 RSGKIAMKLDSRDEILSVET 689
           R    +   +   E + V  
Sbjct: 635 RVLYFSANPNGEAETVKVIL 654


>gi|90969018|gb|ABE02579.1| gyrase A [Campylobacter jejuni]
 gi|90969020|gb|ABE02580.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 149/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D  L+ +M+ I+GP
Sbjct: 182 SKDASLEEIMQFIKGP 197


>gi|218258786|ref|ZP_03475064.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225218|gb|EEC97868.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
          Length = 910

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 145/588 (24%), Positives = 251/588 (42%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   Q+ +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G 
Sbjct: 58  LSGMYQDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGH 114

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 115 TMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA 169

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E++
Sbjct: 170 --LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELL 227

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  VA +   +  L         PDF TG  I       + Y  G     ++  + I  T
Sbjct: 228 DASVAYLRGEEFTL--------YPDFQTGGYI-----DVSKYNDGERGGSVKVRAKI--T 272

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V++EIPY    + ++E I +   + +I       D++  +   +++ L  G S
Sbjct: 273 KLDNKTLVISEIPYGKTTSTLIESILKANDKGKIKIKK--VDDNTARNVEILVHLAPGVS 330

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP   T+  +LK             T +LL  
Sbjct: 331 SDKTIDALYAFTDCEISISPNCCVIMDNKPHFLTVSDVLKHS--------TDDTLHLLRT 382

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +     +  ++  A+L+++    R   + E              + KD+ + I     
Sbjct: 383 ELEIQKGELEESLFFASLEKIFIEERIYKDKE------------FEEAKDMDEAIAHIDK 430

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            +      ++ EV    IL+L   ++  + + +      ++    +E   I    + ++ 
Sbjct: 431 RLDPFKPHFIREVTREDILKLMEIKMGRILKFNTDKCNATIAQYKEEIAKIDDHLAHIVD 490

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                 + +K++     PR T +         +     E + +                 
Sbjct: 491 YTVDWFMMLKEKYGKNYPRMTEVRNFDTIEATKVVEANEKLYINR--------------- 535

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                 +G  G  ++ ++FV +    S    ++ F   G     KV  
Sbjct: 536 -----AEGFIGTGLKKDEFVCN---CSDIDDIILFYRNGTYKVVKVSE 575


>gi|150009781|ref|YP_001304524.1| DNA topoisomerase IV subunit A [Parabacteroides distasonis ATCC
           8503]
 gi|149938205|gb|ABR44902.1| topoisomerase IV subunit A [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 280/680 (41%), Gaps = 77/680 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +           E    PDF TG  I         Y  G     ++
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGGSI-----DIAKYNDGERGGSVK 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I     D + +V++EIPY    + ++E I +   + +I       D++  +   ++
Sbjct: 266 VRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVEIL 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L             
Sbjct: 322 VHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLHHS--------TD 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT  LL +           A+  A+L+++    R   +PE           NA ++ + I
Sbjct: 374 RTLELLREELKIQKQEQEEALFFASLEKIFIEERIYKDPE---------FENAKNMDEAI 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
             ID             ++      ++E+++ R+     D     +     +I +  D L
Sbjct: 425 SHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL 484

Query: 492 SSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                ++         +K++     PR T I         +     E +        Y+ 
Sbjct: 485 ---EHIIDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------YIN 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +G  G+ ++ ++F+ +    S    V+ F   G     K+ ++   
Sbjct: 534 RQ------------EGFIGMGLKKDEFICN---CSDIDDVIIFYRNG---TYKIVKVADK 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +    +N+   N    I  ++ + + +  +N +     T     R   L+   + +
Sbjct: 576 IFIGKDILYVNVFKRNDNRTIYNVI-YRDGKFGYNYIKRFAVTGATRDREYDLTKGTENS 634

Query: 670 RSGKIAMKLDSRDEILSVET 689
           R    +   +   E + V  
Sbjct: 635 RVLYFSANPNGEAETVKVIL 654


>gi|262382912|ref|ZP_06076049.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
 gi|262295790|gb|EEY83721.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
          Length = 911

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 282/680 (41%), Gaps = 77/680 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DARVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +           E    PDF TG  I         Y  G     ++
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGGSI-----DIAKYNDGERGGSVK 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I     D + +V++EIPY    + ++E I +   + +I       D++  +   ++
Sbjct: 266 VRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVEIL 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+            
Sbjct: 322 VHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHS--------TD 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT  LL +           A+  A+L+++    R   +PE           NA ++ + I
Sbjct: 374 RTLELLREELKIQKQEQEEALFFASLEKIFIEERIYKDPE---------FENAKNMDEAI 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
             ID             ++      ++E+++ R+     D     +     +I +  D L
Sbjct: 425 SHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL 484

Query: 492 SSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                ++         +K++     PR T I         +     E +        Y+ 
Sbjct: 485 ---EHIIDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------YIN 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +G  G+ ++ ++F+ +    S    V+ F   G     K+ ++   
Sbjct: 534 RQ------------EGFIGMGLKKDEFICN---CSDIDDVIIFYRNG---TYKIVKVADK 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +    +N+   N    I  ++ + + +  +N +     T     R   L+  ++ +
Sbjct: 576 IFIGKDILYVNVFKRNDNRTIYNVI-YRDGKFGYNYIKRFAVTGATRDREYDLTKGMENS 634

Query: 670 RSGKIAMKLDSRDEILSVET 689
           R    +   +   E + V  
Sbjct: 635 RVLYFSANPNGEAETVKVIL 654


>gi|237719816|ref|ZP_04550297.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
 gi|229451085|gb|EEO56876.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
          Length = 881

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 162/739 (21%), Positives = 288/739 (38%), Gaps = 87/739 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  ++ +    +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    
Sbjct: 17  PADTRDENVKHQ-LTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD--- 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 73  DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAA 127

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 128 APRYIEARLSKFA--LDVVFNPKTTKWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 185

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  ++ +           E    PDF TG  I         Y  G  
Sbjct: 186 SSKILPHNFNELCDASISYLRGE--------EFQLYPDFQTGGSI-----DVAKYNDGER 232

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              ++  + I     D + + +TEIPY    + +++ I + V + +I       D++   
Sbjct: 233 GGAVKVRAKI--NKIDNKTLAITEIPYGKTTSTVIDSILKAVDKGKIKI--RKVDDNTAA 288

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK       
Sbjct: 289 NVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSKPHFLTVSKVLKKSADNTM 348

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +++ +  +    +  +  H      I +       +    S + + A   + +R      
Sbjct: 349 DLLKQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTP--- 405

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +++     ++E+++ R+     D     +  +  EI E
Sbjct: 406 --------------YYPTFIREVTKEDILKLMEIKMGRILKFNSDKADELIAKMKEEIAE 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              I +  + ++         +K++     PR T +             +    VV  + 
Sbjct: 452 ---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRHTELR--------NFDTIEAAKVVEANE 500

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+ R             +G  G  ++ ++FV      S    V+ F   G      V 
Sbjct: 501 KLYINR------------EEGFIGTTLKKDEFVA---CCSDIDDVIIFFRDGKYIVTPV- 544

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +    +N+   N    I  +  + + +     +     T     R   ++ 
Sbjct: 545 --ADKKFVGKNVLYVNVFKKNDKRTIYNV-AYRDGKEGTTYVKRFAVTSVVRDREYDVTL 601

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--------CTQENDILLTTKLGQCVRFPISAIRVF 716
               +R    +   +   EI+ V             E+D    +  G+  R  I   R+ 
Sbjct: 602 GTPDSRITYFSANPNGEAEIIKVTLKPNPRVRRIIFEHDFSEVSIKGRQARGIIL-TRLP 660

Query: 717 AGRNSVGVRGISLAKGDQV 735
             + S+  +G S   G +V
Sbjct: 661 VHKISLKQKGGSTLGGRKV 679


>gi|256838469|ref|ZP_05543979.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
 gi|256739388|gb|EEU52712.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
          Length = 911

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 281/680 (41%), Gaps = 77/680 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +           E    PDF TG  I         Y  G     ++
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGGSI-----DIAKYNDGERGGSVK 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I     D + +V++EIPY    + ++E I +   + +I       D++  +   ++
Sbjct: 266 VRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVEIL 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+            
Sbjct: 322 VHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHS--------TD 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT  LL +           A+  A+L+++    R   +PE           NA ++ + I
Sbjct: 374 RTLELLREELKIQKQEQEEALFFASLEKIFIEERIYKDPE---------FENAKNMDEAI 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
             ID             ++      ++E+++ R+     D     +     +I +  D L
Sbjct: 425 SHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL 484

Query: 492 SSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                ++         +K++     PR T I         +     E +        Y+ 
Sbjct: 485 ---EHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------YIN 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +G  G+ ++ ++F+ +    S    V+ F   G     K+ ++   
Sbjct: 534 RQ------------EGFIGMGLKKDEFICN---CSDIDDVIIFYRNG---TYKIVKVADK 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +    +N+   N    I  ++ + + +  +N +     T     R   L+   + +
Sbjct: 576 IFIGKDILYVNVFKRNDNRTIYNVI-YRDGKFGYNYIKRFAVTGATRDREYDLTKGTENS 634

Query: 670 RSGKIAMKLDSRDEILSVET 689
           R    +   +   E + V  
Sbjct: 635 RVLYFSANPNGEAETVKVIL 654


>gi|90969028|gb|ABE02584.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 117/197 (59%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           DN D  L+ +M+ I+GP
Sbjct: 181 DNKDASLEEIMQFIKGP 197


>gi|255012928|ref|ZP_05285054.1| DNA topoisomerase IV subunit A [Bacteroides sp. 2_1_7]
          Length = 911

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 281/680 (41%), Gaps = 77/680 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +           E    PDF TG  I         Y  G     ++
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGGSI-----DIAKYNDGERGGSVK 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I     D + +V++EIPY    + ++E I +   + +I       D++  +   ++
Sbjct: 266 VRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVEIL 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+            
Sbjct: 322 VHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHS--------TD 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT  LL +           A+  A+L+++    R   +PE           NA ++ + I
Sbjct: 374 RTLELLREELKIQKQEQEEALFFASLEKIFIEERIYKDPE---------FENAKNMDEAI 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
             ID             ++      ++E+++ R+     D     +     +I +  D L
Sbjct: 425 SHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL 484

Query: 492 SSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                ++         +K++     PR T I         +     E +        Y+ 
Sbjct: 485 ---EHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------YIN 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +G  G+ ++ ++F+ +    S    V+ F   G     K+ ++   
Sbjct: 534 RQ------------EGFIGMGLKKDEFICN---CSDIDDVIIFYRNG---TYKIVKVADK 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +    +N+   N    I  ++ + + +  +N +     T     R   L+   + +
Sbjct: 576 IFIGKDILYVNVFKRNDNRTIYNVI-YRDGKFGYNYIKRFAVTGATRDREYDLTKGTENS 634

Query: 670 RSGKIAMKLDSRDEILSVET 689
           R    +   +   E + V  
Sbjct: 635 RVLYFSANPNGEAETVKVIL 654


>gi|298374175|ref|ZP_06984133.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
 gi|298268543|gb|EFI10198.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
          Length = 911

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 160/680 (23%), Positives = 281/680 (41%), Gaps = 77/680 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTMQ-FHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  L       T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFA--LETVFNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++D  +A +           E    PDF TG  I         Y  G     ++
Sbjct: 219 PHNFNELLDASIAYLRGE--------EFALYPDFQTGGSI-----DIAKYNDGERGGSVK 265

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I     D + +V++EIPY    + ++E I +   + +I       D++  +   ++
Sbjct: 266 VRAKI--GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVEIL 321

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           + L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+            
Sbjct: 322 VHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHS--------TD 373

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT  LL +           A+  A+L+++    R   +PE           NA ++ + I
Sbjct: 374 RTLELLREELKIQKQEQEEALFFASLEKIFIEERIYKDPE---------FENAKNMDEAI 424

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
             ID             ++      ++E+++ R+     D     +     +I +  D L
Sbjct: 425 SHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAKINDKL 484

Query: 492 SSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
                ++         +K++     PR T I         +     E +        Y+ 
Sbjct: 485 ---EHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------YIN 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +G  G+ ++ ++F+ +    S    V+ F   G     K+ ++   
Sbjct: 534 RQ------------EGFIGMGLKKDEFICN---CSDIDDVIIFYRNG---TYKIVKVADK 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +    +N+   N    I  ++ + + +  +N +     T     R   L+   + +
Sbjct: 576 IFIGKDILYVNVFKRNDNRTIYNVI-YRDGKFGYNYIKRFAVTGATRDREYDLTKGTENS 634

Query: 670 RSGKIAMKLDSRDEILSVET 689
           R    +   +   E + V  
Sbjct: 635 RVLYFSANPNGEAETVKVIL 654


>gi|117654313|gb|ABK55587.1| DNA gyrase subunit A [Bacillus sp. 3EC5B1]
          Length = 223

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRXPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|256819286|ref|YP_003140565.1| DNA topoisomerase IV subunit A [Capnocytophaga ochracea DSM 7271]
 gi|256580869|gb|ACU92004.1| DNA topoisomerase (ATP-hydrolyzing) [Capnocytophaga ochracea DSM
           7271]
          Length = 864

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 184/876 (21%), Positives = 346/876 (39%), Gaps = 131/876 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++   +   +   I  V  T   Q+ +L YA  VIL RA+P + DG KPV RRI   M
Sbjct: 1   MEDNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRI---M 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 56  HSLKELDDGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNI 110

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  L         +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 LTGDDAAAPRYIEARLSKFA--LDVVFSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGT 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  +A + N   +L         PDFPT  ++       +
Sbjct: 169 EGIAVGLSTKILPHNFIELIEASIAYLKNKPFEL--------YPDFPTAGIM-----DVS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I +   D+  + +TEIP+     ++++ I +   + +I      
Sbjct: 216 GYNDGARGGRVRVRAKISQL--DKSTLCITEIPFTTTTTSLIDSILKANEKGKIKIKK-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D++      +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 272 VDDNTAANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RT  LL +  +     + +    A+L+++             R E+  
Sbjct: 332 --------RSTDRTVSLLKQELEIELSELEMQWHSASLEKIF-----------IREEMYI 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
              N +D + L + +         D    +++     + ++ + R+T          +  
Sbjct: 373 DFKNYTDRESLYEYLYQRFEPFKKDLIREITDDDLAKLTQIPMIRITRFDSYKADENILK 432

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I+E  + L++   L+         +K      R     E   +M   D I    +V
Sbjct: 433 IEADIEEVKNHLAN---LIDYAISHFERLKKTYGKGR-----ERKTEMRVFDTIEATKVV 484

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  + L YV R             +G  G  +R +++V D    S    V+ F+  G +Y
Sbjct: 485 VRNTKL-YVNR------------AEGFVGTGLRKDEYVGD---CSDIDDVIVFTESGAMY 528

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV                          I  +  F +D+           T +  + +
Sbjct: 529 VTKVSDKQYIEKN-----------------IIHVAVFKKDDKR---------TVYNMIYK 562

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK--LGQCVRFPISAIRVFA 717
           +  + F  I R     +  D + E++      +E+ +L  T    G+     ++  ++  
Sbjct: 563 DGQTGFSYIKRFNVTGITRDKKYELI---PQHKESRVLYFTANPNGEAEVVTVNLRQLGT 619

Query: 718 GRNSVGVRGI--SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            R          +L KG  V    +  +A    + +   +  +  ++            +
Sbjct: 620 LRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVSTLKPRK------------I 667

Query: 776 KNDSSVEGNISEERCQELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSG--------- 824
             D+ V+   +EER   L     +  +L ++++G  K T   +  +   +          
Sbjct: 668 WFDNIVKRLNTEERGTLLGAFKGDDRMLLITKEGVVK-TIIPELSLHFENNIAVMEKWVP 726

Query: 825 -KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
            K I         E   +      N+N + +++++ 
Sbjct: 727 EKPISVIYYDGEKERVFVKRFVVENENREELVITEH 762


>gi|117654319|gb|ABK55590.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 223

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 175/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVP 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|313611853|gb|EFR86319.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 207

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/203 (59%), Positives = 157/203 (77%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IPTH+LGEV+DG +A+  NP+I 
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEIT 205


>gi|90969014|gb|ABE02577.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D  L+ +M+ I+GP
Sbjct: 181 DSKDTSLEEIMQFIKGP 197


>gi|90969026|gb|ABE02583.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 151/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D+ L+ +M+ I+GP
Sbjct: 181 DSKDVSLEEIMQFIKGP 197


>gi|90969016|gb|ABE02578.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 149/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D  L+ +M+ I+GP
Sbjct: 182 SKDTSLEEIMQFIKGP 197


>gi|289677158|ref|ZP_06498048.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 356

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 169/368 (45%), Gaps = 92/368 (25%)

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              ++DED++  L + ++HT++L FSS G VY  K + +P  S  ARG+ L+N+L L+ G
Sbjct: 1   ATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDG 60

Query: 628 ERITTIMPFP----------------------------EDE--------SSWNNLYVVFA 651
           E ITT++P                              E+E              ++  +
Sbjct: 61  EYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMS 120

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T +G V++  L  F +   SG IA++LD  D ++S      E +I+L +  G+  RF  S
Sbjct: 121 TANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKES 180

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R    R + GVRG+ L +G ++ISM                                 
Sbjct: 181 DVRAMG-RTARGVRGMRLPEGQKLISML-------------------------------- 207

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                        I EE  Q        ILT SE+G+GKRT+  +F    R G+G+ A  
Sbjct: 208 -------------IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMV 246

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++ N  G LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   A DE++
Sbjct: 247 SNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEKL 304

Query: 892 VSVERIRE 899
           V +ER++E
Sbjct: 305 VGLERVQE 312



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 104/277 (37%), Gaps = 20/277 (7%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR    G   + + + D +
Sbjct: 96  SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSS--GLIALELDEGDIL 153

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++  P
Sbjct: 154 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML-IP 209

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQEN 694
           E+ S      ++ A++ G  +R  +S+F +  R   G IAM  +     ++         
Sbjct: 210 EEGSQ-----ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 264

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +     RN+ GV  I LA  ++++ +  V        E +  
Sbjct: 265 EIMLISDQGTLVRTRVGEVSSLG-RNTQGVTLIKLASDEKLVGLERVQEPSEVEGEEL-- 321

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                     +  D  E+     D   +    E+  Q
Sbjct: 322 ---EGELVDGVIVDAAEVDDAGEDLQADAASDEDEPQ 355


>gi|90969024|gb|ABE02582.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 150/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D+ L+ +M+ I+GP
Sbjct: 182 SKDVSLEEIMQFIKGP 197


>gi|31745487|gb|AAP55217.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 183

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/183 (61%), Positives = 147/183 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGC 202
           +GC
Sbjct: 181 NGC 183


>gi|315224728|ref|ZP_07866551.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
 gi|314945356|gb|EFS97382.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
          Length = 864

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 183/876 (20%), Positives = 344/876 (39%), Gaps = 131/876 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++   +   +   I  V  T   Q+ +L YA  VIL RA+P + DG KPV RRI   M
Sbjct: 1   MEDNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRI---M 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 56  HSLKELDDGRYNKVANVVGNTMQ-YHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNI 110

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  L         +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 LTGDDAAAPRYIEARLSKFA--LDVVFSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGT 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  +A +     +L         PDFPT  ++       +
Sbjct: 169 EGIAVGLSTKILPHNFIELIEASIAYLKKKPFEL--------YPDFPTAGIM-----DVS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I +   D+  + +TEIP+     ++++ I +   + +I      
Sbjct: 216 GYNDGARGGRVRVRAKISQL--DKSTLCITEIPFTTTTTSLIDSILKANEKGKIKIKK-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D++      +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 272 VDDNTAANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RT  LL +  +     + +    A+L+++             R E+  
Sbjct: 332 --------RSTDRTVSLLKQELEIELSELEMQWHSASLEKIF-----------IREEMYI 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
              N +D + L + +         D    +++     + ++ + R+T          +  
Sbjct: 373 DFKNYTDRESLYEYLYQRFEPFKKDLIREITDDDLAKLTQIPMIRITRFDSYKADENILK 432

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I+E  + L++   L+         +K      R     E   +M   D I    +V
Sbjct: 433 IEADIEEVKNHLAN---LIDYAISHFERLKKTYGKGR-----ERKTEMRVFDTIEATKVV 484

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  + L YV R             +G  G  +R +++V D    S    V+ F+  G +Y
Sbjct: 485 VRNTKL-YVNR------------AEGFVGTGLRKDEYVGD---CSDIDDVIVFTESGAMY 528

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV                          I  +  F +D+           T +  + +
Sbjct: 529 VTKVSDKQYIEKN-----------------IIHVAVFKKDDKR---------TVYNMIYK 562

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK--LGQCVRFPISAIRVFA 717
           +  + F  I R     +  D + E++      +E+ +L  T    G+     ++  ++  
Sbjct: 563 DGQTGFSYIKRFNVTGITRDKKYELI---PQHKESRVLYFTANPNGEAEVVTVNLRQLGT 619

Query: 718 GRNSVGVRGI--SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            R          +L KG  V    +  +A    + +   +  +  ++            +
Sbjct: 620 LRKLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVSTLKPRK------------I 667

Query: 776 KNDSSVEGNISEERCQELKL--KEQFILTVSEKGFGKRTSSYDFRISNRSG--------- 824
             D  V+   +EER   L     +  +L ++++G  K T   +  +   +          
Sbjct: 668 WFDDIVKRLNTEERGTLLGAFKGDDRMLLITKEGVVK-TIIPELSLHFENNIAVMEKWVP 726

Query: 825 -KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
            K I         E   +      N+N + +++++ 
Sbjct: 727 EKPISVIYYDGEKERVFVKRFVVENENREELVITEH 762


>gi|91201872|emb|CAJ74932.1| similar to DNA gyrase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 858

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 153/610 (25%), Positives = 257/610 (42%), Gaps = 77/610 (12%)

Query: 1   MTEHIISSDEEEEKGI--TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M  + +     E  G+   ++ +++   N +L YA  VIL RA+P L DGLKPV RRIL 
Sbjct: 1   MVNNKMFKSSPEANGVIHEALHVSEMYSNWFLEYASYVILERAVPALLDGLKPVQRRILH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M QM    + ++ K A I G  M  YHPHG+AAI +AL  + Q    + LLIE QGN+G
Sbjct: 61  SMKQMD---DGRFNKAANIIGHTMQ-YHPHGDAAIGEALVNLGQ----KDLLIETQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            +  GD  AA RY E RL K A  L       T +++ +YDG  +EPV+L  ++P +L  
Sbjct: 113 DISTGDSAAAPRYIEARLSKFA--LEVAFNNQTTEWQLSYDGRKKEPVLLPMKFPLLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVG+AT I  HN  E+++  +  +   +++L         PDFPTG +       
Sbjct: 171 GAEGIAVGLATRIMPHNFIELLEASIDTLRGKEVNL--------LPDFPTGGM-----AD 217

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            + Y  G     I   + IE    +++ +V+  IPY    A +++ I +     +I    
Sbjct: 218 FSNYNEGLRGGRINVRAKIEIL--EKKTLVIRSIPYTTTTANVMDSIVKANENGKIKIK- 274

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
               ++  +   +V+EL    S DV ++ LY +T  +   S N   +   KP    +  I
Sbjct: 275 -RVVDNTAKDVEIVVELPPNVSPDVTIDALYAFTDCEISISPNACVIIDEKPRFLGVNEI 333

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK        ++ R  +  L + R+  H         ++L+++    R   + E      
Sbjct: 334 LKISAKHTVGLLKRELEIKLGELREAWH--------FSSLEKIFIEKRIYRDIEE----- 380

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     + +I  ID             ++E    ++ E+++ R++          +
Sbjct: 381 ------CETWEGVIAAIDKGLMPYKKHFQREINEEDIVSLTEIKIKRISRFDSFKANEAI 434

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVR 535
            +L +EIK+    L     L         ++  +      R+T+I         +     
Sbjct: 435 KALEVEIKQVEYDLKH---LTEYAIAWFENLIKKYGKGRERKTQIRNFETIHVAQVAQAN 491

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           + +        Y+ R+             G  G  +R E+++ D    S    ++ F S 
Sbjct: 492 QKL--------YINRMD------------GFIGYGLRKEEYIGD---CSDIDDIIVFLSD 528

Query: 596 GFVYKEKVWR 605
                 +V  
Sbjct: 529 CTFMVTRVSE 538


>gi|224458678|gb|ACN43202.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 269

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 137/294 (46%), Positives = 187/294 (63%), Gaps = 26/294 (8%)

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           V +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E
Sbjct: 2   VSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKE 61

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VIL
Sbjct: 62  RILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVIL 121

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT Y L KA  RA
Sbjct: 122 NNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARA 181

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ +LD V+ +IR S   E AR  L+++                        
Sbjct: 182 HILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQ------------------------ 217

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L
Sbjct: 218 --FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVL 269


>gi|295134566|ref|YP_003585242.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
 gi|294982581|gb|ADF53046.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
          Length = 873

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 146/608 (24%), Positives = 263/608 (43%), Gaps = 77/608 (12%)

Query: 1   MTEHIISSDEEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E+   S +E+        + +T   ++ +L YA  VIL RA+P + DG KPV RRI+ 
Sbjct: 1   MEENPEESKDEQLNKPKEELMRVTGMYKDWFLDYASYVILERAVPAMEDGFKPVQRRIMH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G
Sbjct: 61  SMKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQIGQ----KDLLIDTQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++  GD  AA RY E RL K A  L         +++ +YDG  +EPV L  ++P +L  
Sbjct: 113 NILTGDRAAAPRYIEARLSKFA--LEVLYNPKLTEWQLSYDGRKKEPVNLPVKFPMLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           GG GIAVG++T +  HN  E++D  +  +      L         PDFPTG +       
Sbjct: 171 GGEGIAVGLSTRLLPHNFNELIDASIKHLQGKRFKL--------FPDFPTGGI-----AD 217

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            + Y  G+    +R  + I +   D+  +V+TEIP+     ++++ + +   + +I    
Sbjct: 218 ISHYNDGKRGGRVRVRAKISQL--DKNTLVITEIPFGTTTTSLIDSVLKANEKGKIK--I 273

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              +++      + I L    S D  ++ LY +T  ++  S     +   KPE   +  I
Sbjct: 274 KKIEDNTAAEVEIQIHLPNNISPDRTIDALYAFTQCENSLSPLGCVIVDNKPEFLGVSDI 333

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L++       ++ R  +  L++  ++ H      I +                      +
Sbjct: 334 LRSSTDHTLHLLKRELEITLDELEEQWHFASLERIFI-------------------ENRI 374

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +        + +I  ID+      +     ++E     + E+R+ R++    D  + ++
Sbjct: 375 YREIEEEETWEGVISAIDEGLKPHITHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKI 434

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVR 535
           ++L  EI     I      L+         +K++      R+T +          + I  
Sbjct: 435 DALEDEIAR---IKHHLDHLIDYAIDYFTKLKEKYGQDKDRKTEL-------RLFEDIEA 484

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
             +V+  + L YV R             +G  G  ++ +++VTD    S    ++ F++ 
Sbjct: 485 SKVVIRNTKL-YVNR------------KEGFIGTALKRDEYVTD---CSDIDDIICFTAD 528

Query: 596 GFVYKEKV 603
           G +   KV
Sbjct: 529 GKMMVTKV 536


>gi|213579808|ref|ZP_03361634.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 277

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/308 (30%), Positives = 159/308 (51%), Gaps = 59/308 (19%)

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++ 
Sbjct: 1   MKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKT 57

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R 
Sbjct: 58  ALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RT 116

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D+V+S+                                          
Sbjct: 117 ATGVRGIKLAGDDKVVSLI----------------------------------------- 135

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G+
Sbjct: 136 ------------IPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GS 181

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E 
Sbjct: 182 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEP 241

Query: 901 EIVDEAES 908
              +E ++
Sbjct: 242 VDDEELDA 249



 Score = 78.8 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L+ +   R    G   V + D D +  + 
Sbjct: 28  ERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLNDGDELIGVD 85

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + S    V+ FS+ G V + K   +      A G   +  + L   +++ +++  P  E 
Sbjct: 86  LTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI-IPRGEG 141

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILL 698
           +     ++  T++G  +R    ++   +R+  G I++K+      ++        + I++
Sbjct: 142 A-----ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMM 196

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            T  G  VR  +S I V   RN+ GV  I  A+ + V+ +  V     D +
Sbjct: 197 ITDAGTLVRTRVSEISVVG-RNTQGVILIRTAEDENVVGLQRVAEPVDDEE 246


>gi|46019104|emb|CAE52016.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019106|emb|CAE52017.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019114|emb|CAE52021.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019118|emb|CAE52023.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 133/212 (62%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|117654301|gb|ABK55581.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I    DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGXTDLRDESDRNGMRIVI 223


>gi|46019116|emb|CAE52022.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 132/212 (62%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|224458682|gb|ACN43204.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 131/293 (44%), Positives = 187/293 (63%), Gaps = 26/293 (8%)

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I
Sbjct: 1   RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 60

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+   
Sbjct: 61  EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLN 120

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E A
Sbjct: 121 LKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIA 180

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+++                            L+E Q +AIL++RL RLTGL R+ I
Sbjct: 181 RTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKI 214

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
             E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLE 267


>gi|196230801|ref|ZP_03129662.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196225142|gb|EDY19651.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 745

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 154/605 (25%), Positives = 245/605 (40%), Gaps = 81/605 (13%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +    +N +L YA  VIL RA+P + DGLKPV RR+L  +  M    + ++ K A 
Sbjct: 68  EQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMD---DGRFHKVAN 124

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDGDPPAAERYTECRL 135
           + G  M K HPHG+A+I  AL  + Q    R  LIE QGN+  ++ GD  AA RY E RL
Sbjct: 125 VVGATM-KLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARL 179

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L      T  ++ +YDG  +EPV L A++P VL+ G  GIAVG++T I  HN 
Sbjct: 180 TPFARDVL--FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNF 237

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            ++    +  +      +         PDFPTG      TG    Y  G     ++  + 
Sbjct: 238 NDLCRAAINHLQGKTFRI--------LPDFPTGG-----TGDFTDYNDGERGGKVKVRAR 284

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ S  +  + +TE+PY V   +++E I     + +I       D++      +++ L 
Sbjct: 285 IEEHS--KSVLCITELPYGVTTESLIESILAANAKGKIKIK--HVDDNTASKVEILVHLP 340

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN------GYKPERFTLIGILKAFVAFREEVV 369
            G+  D ++ QLY +TS Q   +     +         +P+   +  ILKA V   +E++
Sbjct: 341 PGSQPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKELL 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +  +  L +   + H      I +       RI R     +T    L +          
Sbjct: 401 KQELEIKLGELEQQWHWDSLERIFIEE-----RIYRRIEKSQTWESVLEEIRTGLKPFIG 455

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +                 ++E     + E+R+ R++   R      L  +   IKE   
Sbjct: 456 NLRR--------------EVTEEDIVRLTEIRIKRISAYNRFQADEALKKIEEAIKETKH 501

Query: 490 ILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            L +   L+         ++++      RRT          DE   +    VV+ +   Y
Sbjct: 502 HLKN---LVAYAVDWFERLQEKYGKGVKRRTT--------YDEIAQIDASAVVSANQRLY 550

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           V R              G  G+  R  +FVT     S   SVL     G +   KV    
Sbjct: 551 VNRED------------GFIGLNWRQHEFVT---ECSILDSVLTIMRDGSLKVTKVADKV 595

Query: 608 IGSPQ 612
               +
Sbjct: 596 FMGRK 600


>gi|46326990|gb|AAS88433.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 197

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 148/196 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 2   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 181

Query: 205 VIDNPDIDLDALMEII 220
           ++D+ D  L+ +M+ I
Sbjct: 182 LLDSKDASLEEIMQFI 197


>gi|86133356|ref|ZP_01051938.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
 gi|85820219|gb|EAQ41366.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
          Length = 912

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 149/600 (24%), Positives = 255/600 (42%), Gaps = 77/600 (12%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D  +E+ IT V  T   +  +L YA  VIL RA+P L DGLKPV RRI+  M  +   
Sbjct: 20  NTDSPQEETITKV--TGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMKDLD-- 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 76  -DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQ----KELLIDMQGNWGNILTGDRA 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG
Sbjct: 130 AASRYIEARLSKFA--LDVVFNPKTTEWKLSYDGRRKEPIDLPVKFPLLLAQGAEGIAVG 187

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++T I  HN  E++D  +  +      L         PDF TG +          Y  G+
Sbjct: 188 LSTKILPHNFNELIDASIKYLKGRSFKL--------VPDFLTGGI-----ADFTNYNDGK 234

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I +   D++ +V+TEIP+    +++++ I +     +        +++  
Sbjct: 235 RGGKVRIRAKISQL--DKKTLVITEIPFSTTTSSLIDSILK--ANDKGKIKIKKIEDNTA 290

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               +++ L    S D  ++ LY +T+ ++  S     +    P    +  +LK      
Sbjct: 291 AEVEILVHLPPNVSPDKSIDALYAFTNCETSISPLACTIKDNTPVFTGVSDMLKHSTDLT 350

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E++ R  +  LN+  ++ H      I + N     RI R     ET             
Sbjct: 351 VELLKRELEIQLNELEEQWHFSSLERIFIEN-----RIYRDIEEEETW------------ 393

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             + +I+ ID             ++      + E+R+ +++    D  +  + SL  +I 
Sbjct: 394 --EGVIEAIDKGLKPHIKHLKRAITVDDITRLTEIRIKKISKFDIDKAKQFIESLEEKIA 451

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                L++   L+         +KD       R+T I      +  +  +    + V   
Sbjct: 452 GVKHHLAN---LIEFAIAYFKRLKDTYGKGKERKTEIRIFDDIVASKVAMNNAKLYVNR- 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
                               +G  G  ++ ++FVTD    S    ++ F   G +   KV
Sbjct: 508 -------------------AEGFIGTSLKRDEFVTD---CSDIDDIIVFRKDGVMLVTKV 545


>gi|117654305|gb|ABK55583.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  244 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 175/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+G + AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGXRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LV +K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVXDKKIEGITDLRDESDRNGMRIVI 223


>gi|171912371|ref|ZP_02927841.1| DNA topoisomerase IV subunit A [Verrucomicrobium spinosum DSM 4136]
          Length = 678

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 151/608 (24%), Positives = 249/608 (40%), Gaps = 75/608 (12%)

Query: 1   MT-EHIISSDEEEEKGITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT + ++        G     + DE+  + +L YA  VIL RA+P + DGLKPV RRIL 
Sbjct: 1   MTPDSLLPPSGPSHTGELHTKLVDELYGDWFLDYASYVILERAVPHINDGLKPVQRRILH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++    + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G
Sbjct: 61  SMRELE---DGRYNKVANVVGNTM-KYHPHGDASIGDAMVQLGQ----KELLIDTQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++  GD  AA RY E RL K A  L         ++  +YDG  +EPV L  ++P +L  
Sbjct: 113 NILTGDGAAASRYIESRLTKFA--LDVVFSPKVTEWANSYDGRNKEPVTLPVKFPLLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVG++  +  HN  E+ D CVA +      L         PDFP G ++      
Sbjct: 171 GVEGIAVGLSCRVLPHNFNELCDACVAALRGEPFQL--------LPDFPQGGIM-----D 217

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  G+    +R  + IE     R  + +TEIP+     ++ E I     + +I    
Sbjct: 218 AADYNDGQRGGKVRVRAKIETVPK-RNMVRITEIPFGTTAGSVQESIVAANEKGKIKIQK 276

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              +++  +   +++ L  G   D  +  LY +T  +   SVN V +   KP   ++  I
Sbjct: 277 --VEDNTAEFVEILVHLPSGTDPDQAIQALYAFTDCEVSISVNAVVIQDDKPNFISVTEI 334

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK+   + ++++ +  +  L +  ++ H      I +       RI R      T    +
Sbjct: 335 LKSNAEYAKQLLKQELEIELGELEEKWHFSSLEKIFIEK-----RIYRDIEECTTWDGVI 389

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                  +    L+                 ++E     + E+++ R++     +    +
Sbjct: 390 GAIWKGLTPYLGLLKR--------------EITEDDITKLTEIKIKRISKFNSFEADELI 435

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVR 535
             L  +I +    L     L          +K        RRT I         +  I  
Sbjct: 436 RGLESDIDQVQRYLKG---LTRYAISYFERIKKTYGKDRERRTVIAGFDRVAASDVAIAN 492

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E                 ++Y   + G  G      R+ + V+     ST   VLF +  
Sbjct: 493 E-----------------TLYLDPKEGFAGYGLK--REGEPVS---KCSTMDEVLFITRE 530

Query: 596 GFVYKEKV 603
           G +   KV
Sbjct: 531 GVMSVVKV 538


>gi|224458686|gb|ACN43206.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 267

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 130/292 (44%), Positives = 187/292 (64%), Gaps = 26/292 (8%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIE 60

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTL 120

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR
Sbjct: 121 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIAR 180

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 181 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 214

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 266


>gi|117654183|gb|ABK55522.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD + R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDLNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|224458670|gb|ACN43198.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 133/285 (46%), Positives = 181/285 (63%), Gaps = 26/285 (9%)

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 2   QELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPY 61

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 62  QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 121

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 122 QTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIA 181

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LD V+ +IR S   E AR  L+++                            L+E Q
Sbjct: 182 LDHLDAVISLIRSSQTAEIARTGLIEQ--------------------------FSLTEKQ 215

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L
Sbjct: 216 AQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVL 260


>gi|304384322|ref|ZP_07366733.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
 gi|304334638|gb|EFM00920.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
          Length = 901

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 144/588 (24%), Positives = 246/588 (41%), Gaps = 73/588 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G 
Sbjct: 40  LSGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  G   AA RY E RL K A
Sbjct: 97  TMQ-FHPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGSSAAAPRYIEARLSKFA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L       T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ 
Sbjct: 152 --LETVFNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELC 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V+ +   +  +         PDFPTG  I       + Y  G+    ++  + IE  
Sbjct: 210 DAAVSCLRGEEFHV--------YPDFPTGGSI-----DVSKYNDGQRGGTVKVRAKIE-- 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + +V+ +IP+      +++ I + V + +I       ++       +++ L  G S
Sbjct: 255 KQDNKTLVIKDIPFSKTSETLIDSITKAVEKNKI--KVRKVEDLTAANVEILVHLAPGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  L+ LY +T  +   S N   +   KP+  T+  +L+            R    L K
Sbjct: 313 SDKTLDALYAFTDCEINISPNCCVIEDNKPKFLTVSDVLR---------QSARQTMRLMK 363

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                     +     +  E + I          R    +R   A+D+      ID+   
Sbjct: 364 TELEIRRNELMEQLFFSSLEKIFI--------EERIYKERRFEQAADMDAACSFIDEKLT 415

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    + +     ++E+++ R+    +D     +  +  E+      L +   L+ 
Sbjct: 416 PFYPQFVREVRKEDILRLMEIKMQRILKFNKDKADELIARIKEEVAGIDRDLQN---LVE 472

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           I     + +K++  +  PR T I         +     E +        Y+ R       
Sbjct: 473 ITCNWFIYLKEKYGSEHPRLTEIKNFETIEAVKVAEANEKL--------YINRAD----- 519

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  G  G  ++ ++FV +    S    ++ F   G     +V  
Sbjct: 520 -------GFIGTALKRDEFVCN---CSDIDDIIIFYRDGKYKVIRVAD 557


>gi|227518802|ref|ZP_03948851.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
 gi|227073797|gb|EEI11760.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
          Length = 465

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 128/550 (23%), Positives = 236/550 (42%), Gaps = 97/550 (17%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R+ V++ R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+      
Sbjct: 1   RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----- 55

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +E Q  AI+ L+L RLT     D++ E  +L  +I
Sbjct: 56  ---------------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQI 94

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTV 542
            E L+IL++   L  ++K+EL  VK +   PR T+I E + +++ E  +   +ED+VVTV
Sbjct: 95  AELLNILNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTV 154

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR  +  Y A +    G     M++ DF+     V+T   +L  ++ G +    
Sbjct: 155 THEGYIKRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRP 209

Query: 603 VWRLPIGSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V  LP    +  G+ +   IL+L   E I  + P+ E          VF TK G +++ K
Sbjct: 210 VHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKE---LSPTKTFVFITKAGMIKQTK 266

Query: 662 LSDFIQIN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRV 715
           ++DF             MKL   +DEI +V     ++  D+ L +  G  +R+P+  + V
Sbjct: 267 MADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV 326

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                + GV+ ++L + D V++  +V                                  
Sbjct: 327 VGS-KAAGVKSMNLKEDDYVVNGLLVHSEGDTP--------------------------- 358

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   I+ V+++G  KR  + +     R+ +G+    + ++
Sbjct: 359 ------------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--MVLREL 392

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +    V     + +  +++ + KGT   +      I+ R + G  +    KD +V+ V 
Sbjct: 393 KKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVH 452

Query: 896 RIRESEIVDE 905
            +  + I +E
Sbjct: 453 EMHSAVIEEE 462


>gi|265679096|gb|ACY76267.1| DNA gyrase A [Mycobacterium chelonae]
          Length = 183

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 105/182 (57%), Positives = 133/182 (73%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFSPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 VD 200
            +
Sbjct: 181 AE 182


>gi|325287882|ref|YP_004263672.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324323336|gb|ADY30801.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 879

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 152/584 (26%), Positives = 253/584 (43%), Gaps = 71/584 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRI   M  +    + +Y K A + G 
Sbjct: 25  VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MHSLKELDDGRYNKVANVVGH 81

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 82  TMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSKFA 136

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L         +++ +YDG  +EPV L  ++P +L  G  GIAVG++T I  HN  E++
Sbjct: 137 --LDVVFSPKITEWQQSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELI 194

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +      L         PDFPT  +I         Y  G     IR  + I  +
Sbjct: 195 DSSIKHLKGQKFKL--------FPDFPTSGII-----DVTGYNDGLRGGKIRVRAKI--S 239

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D+  +V++EIPY  N +++++ I +     +        +++      +++ L  G S
Sbjct: 240 QSDKNTLVISEIPYGTNTSSLIDSILK--ANDKGKIKIKKIEDNTAADVEILVHLPAGIS 297

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            D  ++ LY +T+ +S  S     +   KP    +  +L+    +  E++    +  L +
Sbjct: 298 PDKTIDALYAFTACESSISPLGCIIEDNKPLFIGVTEMLQRSTDYTVELLKEELEIQLGE 357

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++ H      I + N     RI R     ET               + +I  ID    
Sbjct: 358 LEEQWHFSSLERIFIEN-----RIYRDIEEEETW--------------EGVIAAIDKGLK 398

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++E     + E+R+ R++    D  +  L+SL   I E    L     L+ 
Sbjct: 399 PHTKHLKRAVTEEDITRLTEIRIKRISKFDLDKAQQLLDSLEERIAEVKHNL---EHLVE 455

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
                  ++KD+    R     E   ++   D I    +V+  + L YV R         
Sbjct: 456 FAINYFKNLKDKYGKGR-----ERKSEIRVFDDIEATKVVIRNTKL-YVNR--------- 500

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
               +G  G  ++ +++VTD    S    ++ F+  G +   KV
Sbjct: 501 ---EEGFVGTSLKKDEYVTD---CSDIDDIIVFTKDGHMMVSKV 538


>gi|305666739|ref|YP_003863026.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
 gi|88708963|gb|EAR01197.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
          Length = 892

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 153/584 (26%), Positives = 255/584 (43%), Gaps = 71/584 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T   ++ +L YA  VIL RA+P + DG KPV RRIL  + ++    + +Y K A + G 
Sbjct: 33  VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRILHSLKELD---DGRYNKVANVVGH 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A
Sbjct: 90  TMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSKFA 144

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             L         +++ +YDG  +EPV L  ++P +L  G  GIAVG++T +  HN  E++
Sbjct: 145 --LDVVFSPKITEWQLSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFNELI 202

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +      L         PDFPT  +I       N Y  G     IR  +    +
Sbjct: 203 DASIKHLKGQRFKL--------YPDFPTAGII-----DVNNYNDGLRGGKIRVRAR--MS 247

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D+  +V+ EIPY  N +++++ I +     +        +++      +++ L  G S
Sbjct: 248 QKDKNTLVINEIPYGTNTSSLIDSILK--ANDKGKIKIKKIEDNTAADVEILVHLPSGIS 305

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            D  ++ LY +TS +S  S     +   KP    +  +LK       E++    +  L++
Sbjct: 306 PDKTIDALYAFTSCESSISPLSCIIEDNKPIFIGVSEMLKQSTDLTVELLKAELEIQLSE 365

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++ H      I + N     RI R     ET               + +I  ID    
Sbjct: 366 LEEQWHFASLERIFIEN-----RIYRDIEEEETW--------------EGVISAIDKGLK 406

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++E     + E+R+ R++    D  +  L+SL  +I E    L++   L+ 
Sbjct: 407 PHTKHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQYLDSLEEKIAEVKHHLAN---LID 463

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
                  ++K +    R     E   ++   D I    +V+  + L YV R         
Sbjct: 464 FAIDYFKNLKTKYGKGR-----ERKSEIRVFDDIEATKVVIRNTKL-YVNR--------- 508

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
               +G  G  +R +++VTD    S    ++ F+  G     KV
Sbjct: 509 ---EEGFVGTSLRRDEYVTD---CSDIDDIIVFTKDGKAMITKV 546


>gi|265679090|gb|ACY76264.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679092|gb|ACY76265.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679094|gb|ACY76266.1| DNA gyrase A [Mycobacterium bolletii]
          Length = 183

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 106/182 (58%), Positives = 133/182 (73%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 VD 200
            +
Sbjct: 181 AE 182


>gi|258648955|ref|ZP_05736424.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
 gi|260850558|gb|EEX70427.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
          Length = 896

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 137/598 (22%), Positives = 244/598 (40%), Gaps = 72/598 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   +N +L YA  VIL RA+P   DGLKPV RRIL  M ++    + +Y K A + G
Sbjct: 31  PLTGMYRNWFLDYASYVILERAVPHSDDGLKPVQRRILHAMKRLD---DGRYNKVANVVG 87

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M  +HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 88  HTMQ-FHPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDDAAAPRYIEARLSKF 142

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  L       T  ++ +YDG  +EP+ L  ++P +L  G  GIAVG++  I  HN GE+
Sbjct: 143 A--LDVVFNPKTTAWKLSYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSAKILPHNFGEL 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               +  +      +         PDF TG  I       + Y  GR    ++  + I K
Sbjct: 201 CQAAIQYLRGEAFTI--------YPDFQTGGSI-----DVSNYKEGRRGGSVKVRAKISK 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              ++  +V+TEIP+     ++++ I     + +I       D++      +++ L  G 
Sbjct: 248 LDNNK-TLVITEIPFGTTTQSIIDSILRANEKGKI--KVRKVDDNTAAEVEILVHLAPGT 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S+D  ++ LY +T  +   S N V +   KP   ++  +L+  V     ++    +   +
Sbjct: 305 SSDKAIDALYAFTDCEVSISPNCVVITDKKPRFLSVNEVLQQSVDRTMSLLRSELEIRRH 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +  +  H         A+L+ +    R   +              A         ID+  
Sbjct: 365 ELLESLH--------YASLERIFIEERIYKDKA---------FEQAISTDAACIHIDERL 407

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     +++     +LE+++AR+    ++     +  +  ++      L++   + 
Sbjct: 408 TPYYPQFYREVTKEDILRLLEIKMARILKFNKEKADELIARMTADVARINKDLNN---MT 464

Query: 499 GIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           G+       + D+     PRRT +      +  +     + + V                
Sbjct: 465 GVTINWFQLLFDKYAAEHPRRTELRSFDTIVASKVVEANQKLYVNR-------------- 510

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                   G  G  ++ ++FV +    S    V+ F   G     +V          +
Sbjct: 511 ------ADGFMGTSLKKDEFVDN---CSDIDDVILFYRDGTYKVVRVADKVFIGRTEK 559


>gi|227554720|ref|ZP_03984767.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227176148|gb|EEI57120.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 318

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/320 (37%), Positives = 195/320 (60%), Gaps = 26/320 (8%)

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++R  + IE 
Sbjct: 1   IDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVILRAKTKIEP 60

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++V+ELK+  
Sbjct: 61  LKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVVELKKDV 120

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++ R ++ L+
Sbjct: 121 NAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVIINRCQFELD 180

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR R H++ GL  A++ LD+V+  IR S + + A++ L+                    
Sbjct: 181 KARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS------------------- 221

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT     D++ E  +L  +I E L+IL++   L 
Sbjct: 222 -------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELF 274

Query: 499 GIIKQELLSVKDELDTPRRT 518
            ++K+EL  VK +   PR T
Sbjct: 275 SVMKKELREVKKQYGNPRLT 294


>gi|265679098|gb|ACY76268.1| DNA gyrase A [Mycobacterium immunogenum]
          Length = 181

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 106/181 (58%), Positives = 132/181 (72%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 V 199
            
Sbjct: 181 A 181


>gi|46019120|emb|CAE52024.1| gyrase subunit A [Bacillus licheniformis]
          Length = 212

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 132/212 (62%), Positives = 170/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +   + IE+TS
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLPAKAQIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 212


>gi|163789018|ref|ZP_02183462.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
 gi|159875682|gb|EDP69742.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
          Length = 891

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 159/693 (22%), Positives = 293/693 (42%), Gaps = 87/693 (12%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + +++ D   ++ I  V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  
Sbjct: 6   DDLLNEDSGNQETIKKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  
Sbjct: 64  LD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILT 115

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  L         +++ +YDG  +EP+ L   +P +L  GG G
Sbjct: 116 GDRAAASRYIEARLSKFA--LDVVYNPKITEWQASYDGRRKEPINLPVMFPLLLAQGGEG 173

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T I  HN  E++D  V  +      +         PDFPT  +          Y
Sbjct: 174 IAVGLSTKILPHNFIELIDASVKHLKGKRFTI--------LPDFPTAGI-----ADFTNY 220

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     +R  + I     D+  + +TEIP+    +++++ I +     +        +
Sbjct: 221 NDGLRGGKVRVRAKI--AQRDKNTLAITEIPFATTTSSLIDSILK--ANDKGKIKIKKIE 276

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++      ++I L  G S D  ++ LY +T+ ++  S     +   KP    +  +L+  
Sbjct: 277 DNTAAEVEILIHLPSGLSPDKTIDALYAFTNCETSISPLGCVIEDNKPFFVGVTEMLRRS 336

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
                +++ +  +  L++  ++ H         A+L+ +    R   + E       + +
Sbjct: 337 TDNTVQLLKQELEIKLSELEEQWH--------FASLERIFIEKRIYRDIEE------EET 382

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W       +I  ID             ++E     + E+R+ R++    D  + ++++L 
Sbjct: 383 WEG-----VIKAIDKGLAPHVKHLKRKVTEDDIVRLTEIRIKRISKFDIDKAQQKIDALE 437

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMV 539
            +I E    L++   L+         +K +      R+T I          + +    +V
Sbjct: 438 DQIAEVKHHLAN---LIDYAIAYFERLKKDYGEGKERKTEI-------RIFEDVDATKVV 487

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +  + L YV R             +G  G  +R +++V D    S    ++ F+  G + 
Sbjct: 488 IRNTKL-YVNR------------EEGFIGTSLRRDEYVCD---CSDIDDIIVFTKEGKMM 531

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV     GS    GK +I++    + ++ T       D     +    FA     + R
Sbjct: 532 VTKV-----GSKTFIGKNIIHVAVFKKKDKRTVYNMIYRDGKGGPSYVKRFAVTS--MTR 584

Query: 660 NKLSDFIQINRSGKI---AMKLDSRDEILSVET 689
           ++  D    N+   +   +   +   E+++V  
Sbjct: 585 DREYDLTNGNKGSVLWYFSANPNGEAEVVTVML 617


>gi|150002814|ref|YP_001297558.1| DNA topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294777257|ref|ZP_06742712.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
 gi|149931238|gb|ABR37936.1| topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294448877|gb|EFG17422.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
          Length = 897

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/711 (21%), Positives = 284/711 (39%), Gaps = 96/711 (13%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHLDYKPADTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKL------- 223

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G    +++  + I     D + + + E+P+      +
Sbjct: 224 -YPDFQTGGSI-----DVSRYNDGERGGMVKVRAKI--NKIDNKTLSIAEVPFGKTVPGV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I       ++   +   +++ L  G S+D  L+ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKI--RKVEDLTSEKVEILVHLAPGVSSDKTLDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK        ++ +  +    +  +  H      I +      
Sbjct: 334 CCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                 S N + A                  + ID+            +++     +L++
Sbjct: 394 EVKFEQSENTDAA-----------------CEFIDERLTPFYPQFIREVTKEDILKLLDI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+    +D     +  +  +I+E  + L+    ++         +KD+     PRRT
Sbjct: 437 KMARILKFNKDKADENIARIKEQIEEINNHLAH---IVEYTIDWYQMLKDKYGKQYPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +             +    VV  +   Y+ R             +G  G  ++ ++F+ 
Sbjct: 494 ELR--------NFDTIEAAKVVEANEKLYINR------------EEGFIGTALKKDEFIA 533

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
           +    S    V+ F   G     KV R+       +    +NI   N    I  ++ + +
Sbjct: 534 N---CSDIDDVIIFYKDGKY---KVVRVTDKMFVGKNVLYVNIFKKNDKRTIYNVV-YRD 586

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +  ++ +     T     R   ++     +R        +   E++ +  
Sbjct: 587 GKEGFHYIKRFNITSITRDREYDVTQGTPGSRIVYFTANPNGEAEVIKITL 637


>gi|265752343|ref|ZP_06088136.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
 gi|263237135|gb|EEZ22605.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 897

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 285/711 (40%), Gaps = 96/711 (13%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHSDYKPTDTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKL------- 223

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G    +++  + I     D + + + E+P+      +
Sbjct: 224 -YPDFQTGGSI-----DVSRYNDGERGGMVKVRAKI--NKIDNKTLSIAEVPFGKTVPGV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I       ++   +   +++ L  G S+D  L+ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKI--RKVEDLTSEKVEILVHLAPGVSSDKTLDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK        ++ +  +    +  +  H      I +      
Sbjct: 334 CCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                 S N + A                  + ID+      S     +++     +L++
Sbjct: 394 EVKFEQSENTDAA-----------------CEFIDERLTPFYSQFIREVTKEDILKLLDI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+    +D     +  +  +I+E  + L+    ++         +KD+     PRRT
Sbjct: 437 KMARILKFNKDKADENIARIKEQIEEINNHLAH---IVEYTIDWYQMLKDKYGKQYPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +             +    VV  +   Y+ R             +G  G  ++ ++F+ 
Sbjct: 494 ELR--------NFDTIEAAKVVEANEKLYINR------------EEGFIGTTLKKDEFIA 533

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
           +    S    V+ F   G     KV R+       +    +NI   N    I  ++ + +
Sbjct: 534 N---CSDIDDVIIFYKDGKY---KVVRVTDKMFVGKNVLYVNIFKKNDKRTIYNVV-YRD 586

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +  ++ +     T     R   ++     +R        +   E++ +  
Sbjct: 587 GKEGFHYIKRFNITSITRDREYDVTQGTPGSRIVYFTANPNGEAEVIKITL 637


>gi|212690851|ref|ZP_03298979.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|237712658|ref|ZP_04543139.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
 gi|212666580|gb|EEB27152.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|229453979|gb|EEO59700.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
          Length = 897

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 285/711 (40%), Gaps = 96/711 (13%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHSDYKPTDTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKL------- 223

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G    +++  + I     D + + + E+P+      +
Sbjct: 224 -YPDFQTGGSI-----DVSRYNDGERGGMVKVRAKI--NKIDNKTLSIAEVPFGKTVPGV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I       ++   +   +++ L  G S+D  L+ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKI--RKVEDLTSEKVEILVHLAPGVSSDKTLDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK        ++ +  +    +  +  H      I +      
Sbjct: 334 CCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                 S N + A                  + ID+      S     +++     +L++
Sbjct: 394 EVKFEQSENTDAA-----------------CEFIDERLTPFYSQFIREVTKEDILKLLDI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+    +D     +  +  +I+E  + L+    ++         +KD+     PRRT
Sbjct: 437 KMARILKFNKDKADENIARIKEQIEEINNHLAH---IVEYTIDWYQMLKDKYGKQYPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +             +    VV  +   Y+ R             +G  G  ++ ++F+ 
Sbjct: 494 ELR--------NFDTIEAAKVVEANEKLYINR------------EEGFIGTTLKKDEFIA 533

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
           +    S    V+ F   G     KV R+       +    +NI   N    I  ++ + +
Sbjct: 534 N---CSDIDDVIIFYKDGKY---KVVRVTDKMFVGKNVLYVNIFKKNDKRTIYNVV-YRD 586

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +  ++ +     T     R   ++     +R        +   E++ +  
Sbjct: 587 GKEGFHYIKRFNITSITRDREYDVTQGTPGSRIVYFTANPNGEAEVIKITL 637


>gi|319955665|ref|YP_004166932.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319424325|gb|ADV51434.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 886

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 146/600 (24%), Positives = 257/600 (42%), Gaps = 73/600 (12%)

Query: 7   SSDEEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             ++E ++        +T   ++ +L YA  VIL RA+P + DG KPV RRI   M  + 
Sbjct: 15  QDNQENQENTQDSLTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MHALK 71

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGD 123
              + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD
Sbjct: 72  ELDDGRYNKVANVVGHTMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGD 126

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RY E RL K A  L          ++ +YDG  +EP  L  ++P +L  G  GIA
Sbjct: 127 SAAASRYIEARLSKFA--LEVVFSPKITAWQSSYDGRKKEPTNLPVKFPLLLAQGAEGIA 184

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VG++T +  HN  E++D  +  +      +         PDFPT  +I       + Y  
Sbjct: 185 VGLSTKVLPHNFIELIDSSIKHLKGQKFTI--------FPDFPTSGII-----DVSNYND 231

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G     IR  + I +   D+  +V+ EIPY  N +++++ I +   + +I       +++
Sbjct: 232 GIRGGKIRVRAKISQL--DKSTLVINEIPYGTNTSSLIDSILKANEKGKIR--VRKIEDN 287

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                 ++I L  G S D  ++ LY +T+ +S  S     +   KP    +  +L+    
Sbjct: 288 TAADVEILIHLPSGLSPDKTIDALYAFTACESSISPLGCIIEDNKPLFIGVTEMLQRSTD 347

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +  E++    +  L +  ++ H      I + N     RI R     ET           
Sbjct: 348 YTVELLRAELEVQLRELEEQWHFASLERIFIEN-----RIYRDIEEQETW---------- 392

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               + +I  IDD            ++E     + E+R+ R++    D  +  ++ L  +
Sbjct: 393 ----EGVIKAIDDGLKPYIKHLKRAVTEEDIARLTEIRIKRISKFDIDKAQQLIDGLEEK 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E  + L+    ++        ++K +    R     E   ++   D I    + +  +
Sbjct: 449 IAEVKNHLAH---IIEFAIDYFKNLKSKYGKDR-----ERKSEIRIFDDIEATKVAIRNT 500

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            L YV R             +G  G  ++ +++V D    S    ++  +  G +   KV
Sbjct: 501 KL-YVNR------------EEGFLGTSLKRDEYVGD---CSDIDDIIVMTKAGEMMITKV 544


>gi|46019124|emb|CAE52026.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 128/212 (60%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++
Sbjct: 61  EILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 121 GVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|237723599|ref|ZP_04554080.1| topoisomerase IV subunit A [Bacteroides sp. D4]
 gi|229438052|gb|EEO48129.1| topoisomerase IV subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 897

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 156/711 (21%), Positives = 285/711 (40%), Gaps = 96/711 (13%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHSDYKPTDTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKL------- 223

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G    +++  + I     D + + + E+P+      +
Sbjct: 224 -YPDFQTGGSI-----DVSRYNDGERGGMVKVRAKI--NKIDNKTLSIAEVPFGKTVPGV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I       ++   +   +++ L  G S+D  L+ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKI--RKVEDLTSEKVEILVHLAPGVSSDKTLDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK        ++ +  +    +  +  H      I +      
Sbjct: 334 CCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                 S N + A                  + ID+      S     +++     +L++
Sbjct: 394 EVKFEQSENTDAA-----------------CEFIDERLTPFYSQFIREVTKEDILKLLDI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+    +D     +  +  +I+E  + L+    ++         +KD+     PRRT
Sbjct: 437 KMARILKFNKDKADENIARIKEQIEEINNHLAH---IVEYTIDWYQMLKDKYGKQYPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +             +    VV  +   Y+ R             +G  G  ++ ++F+ 
Sbjct: 494 ELR--------NFDTIEAAKVVEANEKLYINR------------EEGFIGTTLKKDEFIA 533

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
           +    S    V+ F   G     KV R+       +    +NI   N    I  ++ + +
Sbjct: 534 N---CSDIDDVIIFYKDGKY---KVVRVTDKMFVGKNVLYVNIFKKNDKRTIYNVV-YRD 586

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +  ++ +     T     R   ++     +R        +   E++ +  
Sbjct: 587 GKEGFHYIKRFNITSITRDREYDVTQGTPGSRIVYFTANPNGEAEVIKITL 637


>gi|215480311|gb|ACJ67500.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 129/292 (44%), Positives = 187/292 (64%), Gaps = 26/292 (8%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P+QVNKA ++EKIA+LVR+K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPFQVNKAKLIEKIADLVRDKKIE 60

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTL 120

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR
Sbjct: 121 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIAR 180

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 181 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 214

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 EEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 266


>gi|297621778|ref|YP_003709915.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297377079|gb|ADI38909.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 633

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 142/532 (26%), Positives = 230/532 (43%), Gaps = 55/532 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I    +++Y+ YA  VIL RAIPD+ DGLKPV RRIL  + +     + K  K A ++G
Sbjct: 3   DIKYLYKDNYIKYASYVILDRAIPDVVDGLKPVQRRILHTLYK---IHDGKLHKVANVAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           + M  YHPHG+AAI DAL  M    + +   ++ QGNFG++  GDP AA RY E RL   
Sbjct: 60  QTMA-YHPHGDAAIIDALVNM----ANKGFFLDCQGNFGNIYTGDPAAAARYIETRLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A         D  +   +YDG  QEPV L A+ P VL+ G  GIAVGM+TNI  HN  E+
Sbjct: 115 AK--DTLFNPDLTETVSSYDGRNQEPVCLPAKVPVVLMQGASGIAVGMSTNILPHNFIEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +AV++  D ++         PDF TG ++       + Y  GRG + +R    I+ 
Sbjct: 173 LQAEIAVLEGKDFEI--------YPDFITGGIM-----DVSEYDKGRGRLKLRAKIDIQ- 218

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +V++EI +     +++  I E  +  +I    D  ++       + I+L RG 
Sbjct: 219 ---DPKTLVISEICHGTTTESLIRSIDEAAKRGKIKI--DSINDYTADKVEIEIKLPRGH 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +++ LY YT  +   +   + +  + P   T+  IL+      +  +         
Sbjct: 274 YAQDLIDSLYAYTDCEVSINCMCMVIKDHLPWETTVDEILRLHAELLKGYL--------- 324

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K          L        E + I             L +          L   + DS 
Sbjct: 325 KKELELEKDRLLEKIFDKTLEQIFI----------ENRLYKHLETVKSSDKLRSTVADSL 374

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   ++     +L++ + R++    D  + E+  L  E+      L S   + 
Sbjct: 375 KPFHEQLSRVPTKDDIEKLLQIPIRRISKFDMDKNQEEIAGLRKELARVEKDLKS---IK 431

Query: 499 GIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
               + L  +  +      RRTR+ E + +++      +E  V      G+V
Sbjct: 432 QFTIKYLKELVSKYRDIYTRRTRVGE-IQELDKRAIATKELKVGIDLKSGFV 482


>gi|254882315|ref|ZP_05255025.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319643075|ref|ZP_07997706.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
 gi|254835108|gb|EET15417.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317385243|gb|EFV66191.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
          Length = 897

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 155/711 (21%), Positives = 284/711 (39%), Gaps = 96/711 (13%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHLDYKPADTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M  +HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTMQ-FHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  L       T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFA--LDVVFNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKL------- 223

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G    +++  + I     D + + + E+P+      +
Sbjct: 224 -YPDFQTGGSI-----DVSRYNDGERGGMVKVRAKI--NKIDNKTLSIAEVPFGKTVPGV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I       ++   +   +++ L  G S+D  L+ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKI--RKVEDLTSEKVEILVHLAPGVSSDKTLDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK        ++ +  +    +  +  H      I +      
Sbjct: 334 CCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                 S N + A                  + ID+            +++     +L++
Sbjct: 394 EVKFEQSENTDAA-----------------CEFIDERLTPFYPQFIREVTKEDILKLLDI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+    +D     +  +  +I+E  + L+    ++         +KD+     PRRT
Sbjct: 437 KMARILKFNKDKADENITRIKEQIEEINNHLAH---IVEYTIDWYQMLKDKYGKQYPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +             +    VV  +   Y+ R             +G  G  ++ ++F+ 
Sbjct: 494 ELR--------NFDTIEAAKVVEANEKLYINR------------EEGFIGTALKKDEFIA 533

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
           +    S    V+ F   G     KV R+       +    +NI   N    I  ++ + +
Sbjct: 534 N---CSDIDDVIIFYKDGKY---KVVRVTDKMFVGKNVLYVNIFKKNDKRTIYNVV-YRD 586

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +  ++ +     T     R   ++     +R        +   E++ +  
Sbjct: 587 GKEGFHYIKRFNITSITRDREYDVTQGTPGSRIVYFTANPNGEAEVIKITL 637


>gi|163756899|ref|ZP_02164007.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
 gi|161323135|gb|EDP94476.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
          Length = 880

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 141/606 (23%), Positives = 258/606 (42%), Gaps = 80/606 (13%)

Query: 1   MTEHI--ISSDEEEEKGITSVSITD---EMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M EH   + ++ ++    +  +IT      ++ +L YA  VIL RA+P + DG KPV RR
Sbjct: 1   MEEHNEELHAENQQHNNNSQDTITKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I+  M  +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QG
Sbjct: 61  IMHSMKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GD  AA RY E RL K A  L         D++ +YDG   EPV L  ++P +
Sbjct: 113 NWGNILTGDRAAASRYIEARLSKFA--LDVVYSPKITDWQLSYDGRKNEPVNLPVKFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T I  HN  E++D  +  +      +         PDFPT  ++   
Sbjct: 171 LAQGAEGIAVGLSTKILPHNFIELIDASIKHLQGKRFQI--------YPDFPTSGIM--- 219

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               + Y  G     +R  + I +   D+  +V+TEIP+  N  +++E I +     +  
Sbjct: 220 --DVSNYNDGLRGGKVRVRAKISQL--DKNTLVITEIPFGTNTTSLIESILK--ANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      +++ L    S D  ++ LY +T+ +S  S     +   KP    +
Sbjct: 274 IKIKKIEDNTAADVEILVHLPNNISPDKTIDALYAFTNCESSISPLGCIIYDNKPLFIGV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       E++    +  L + +++ H      I +                    
Sbjct: 334 SEMLRRSTDHTVELLKSELEIQLGELQEQWHFASLERIFI-------------------E 374

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             + +        + +I+ ID+      +     ++      + E+R+ R++    D  +
Sbjct: 375 NRIYREIEEEETWEGVINAIDEGLKPHITHLKRAVTVEDITRLTEIRIKRISKFDIDKAQ 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDC 532
            ++++L   I E    L++   L+         +K +      R+T I          D 
Sbjct: 435 QKIDALEETIAEVRHHLAN---LIDYAVSYFTRLKKQYGEGKERKTEI-------RIFDD 484

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +    +V+  + L YV R             +G  G  ++ +++V D   +     ++ F
Sbjct: 485 VDARKVVIRNTKL-YVNR------------EEGFIGTSLKKDEYVADCADI---DDIIAF 528

Query: 593 SSLGFV 598
           +  G +
Sbjct: 529 TRDGKM 534


>gi|46019108|emb|CAE52018.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 128/212 (60%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++
Sbjct: 61  EILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 121 GVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|149199674|ref|ZP_01876706.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
 gi|149137191|gb|EDM25612.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
          Length = 808

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 145/686 (21%), Positives = 264/686 (38%), Gaps = 78/686 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +   M  +++ YA  VI  RAIPD+ DGLKPV RRIL     +    + K+ K A I G 
Sbjct: 33  LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHT---LFKADDGKFHKVANIVGA 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHG+++IY AL  +    + +   IE QGNFG++  GD  +A RY ECRL   A
Sbjct: 90  CMA-YHPHGDSSIYGALVTV----ANKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
                    +T +F  +YDG  +EPV L A+ P +L+ G  GIAVGMAT I  HN  E++
Sbjct: 145 R--ETLFNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              + ++     ++         PDF  G ++       + Y  GRG + +R    I   
Sbjct: 203 KAQIKILRGQRFEI--------YPDFLCGGIM-----DISQYDFGRGKVTVRAKIDI--- 246

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             + + +V+ ++       +++  I E  +  +I   +    +   +   + I L RG  
Sbjct: 247 -LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKIKIAS--IQDYTAEHVEIEINLPRGVQ 303

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           AD  LN LY +T  +   S N+  +   +P+   +  +L         ++        NK
Sbjct: 304 ADWALNALYAFTQCEVSLSPNITVIQRGRPKEIHVGEVLHHNTQTLVNILRWELLNEQNK 363

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++ H      I +                      + ++    +   ++ + +     
Sbjct: 364 LNEKYHDRTLERIFI-------------------EERIYKKIEECTSQSEVFEAVRSGLK 404

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +S+     +L + + R++    +    EL  +        ++  +   L  
Sbjct: 405 PFLDQLRRDVSDEDIERLLRIPIRRISLFDINKNNKELEEILKA---LKEVAYNLEHLKD 461

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                + ++  +     PR T I    ++  D   I   ++ +    +G      ++   
Sbjct: 462 YTINFIKNLISKYGKQYPRLTEI--KSIEKVDAKEIAVANVKLGYDKVGGYIGTQINNGN 519

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
             +     R  ++ +D  F   +  +S    V  F+ +  V KE+++ +     ++ G +
Sbjct: 520 HIKCTEFDRIIILTKDGKF--KVTNISDKLFVGRFTEIFVVDKEQIYSVIYTDKKS-GIS 576

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                 + +      I+          N   +  T +G V    L D       G     
Sbjct: 577 YHKRCMIKK-----FILDKEYLLFPKGNKLELIDTNYGIVLDCHLEDTS--RSKG----- 624

Query: 678 LDSRDEILSVETCTQENDILLTTKLG 703
                  ++ E    +  I   T  G
Sbjct: 625 -------VTAELIFDDVPIRSATAKG 643


>gi|237846379|gb|ACR22827.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 202

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 148/198 (74%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G
Sbjct: 5   DIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +
Sbjct: 65  AVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLS 124

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++
Sbjct: 125 HELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELI 184

Query: 200 DGCVAVIDNPDIDLDALM 217
           DG + ++D+ D  L+ +M
Sbjct: 185 DGLLYLLDSKDASLEEIM 202


>gi|327406037|ref|YP_004346875.1| DNA topoisomerase [Fluviicola taffensis DSM 16823]
 gi|327321545|gb|AEA46037.1| DNA topoisomerase (ATP-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 911

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 140/631 (22%), Positives = 243/631 (38%), Gaps = 78/631 (12%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S  E+       + ++   +N +L YA  VIL RA+P L DG KPV RRIL  M ++   
Sbjct: 32  SPFEKNHVDENIIPLSGLYENWFLDYASYVILERAVPSLHDGFKPVQRRILHSMKELD-- 89

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDGDPP 125
            + +Y K A + G  M KYHPHG+A+I DAL ++ Q    + LLI+ QGN+  ++ GD  
Sbjct: 90  -DGRYNKVANVIGNTM-KYHPHGDASIGDALVQLGQ----KELLIDCQGNWGNTLTGDGA 143

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  ++      T  +  +YDG  +EP  L  ++P +L  G  GIAVG
Sbjct: 144 AAPRYIEARLSKFASHVV--FNPKTTSWLLSYDGRNKEPDNLPVKFPILLAQGAEGIAVG 201

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MA  I  HN  E++D  +  +    I++         PDF  G +          Y  G 
Sbjct: 202 MACKILPHNFIELIDQSINHLRGKKIEI--------FPDFLNGGM-----ADFTNYNDGL 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I     D + +++ EIP+     +++E + +     +        +++  
Sbjct: 249 RGGKVRVRAKI--KKVDNKTLIINEIPFGCTTTSLIESVIK--ANDKGKIKIKKIEDNTA 304

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               +VI L  G S D  ++ LY +T  +   S N   ++G  P    +  ILK      
Sbjct: 305 ADAEIVIHLAPGVSPDKTIDALYAFTDCEVSISPNASVIDGDTPRFMGVTEILKVNTDNT 364

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             ++ +  +  L +   + H    L       +  +    +S      +  L Q  +   
Sbjct: 365 VTLLRKELEIRLAELESQWHFST-LEKIFIREEMYIDFKLYSD-----KEGLYQYMY--- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  + +   + + ++ + R+T    D   + +  L  E++
Sbjct: 416 ----------KRFEKFKKQFVREIIDEDLQRLTQIPMIRITRFDSDKADDLIAKLEAEME 465

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           E    L +   L+    +    +K        RRT +         +  I    + V + 
Sbjct: 466 EVKKHLGN---LIEYAIEYYKDLKKRFGAGKERRTEMKVFDNIAASKVIIANRKLYVDI- 521

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
                               +G  G  ++  + V D    S    ++ F   G      V
Sbjct: 522 -------------------EEGFIGWGLKKTEAVND---CSEIDDIIVFFDTGKF---IV 556

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIM 634
            ++       +G    ++        I  +M
Sbjct: 557 TKVSEKKFVGKGIVHADVWKKGDKRTIYHVM 587


>gi|325279767|ref|YP_004252309.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311576|gb|ADY32129.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 931

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 157/605 (25%), Positives = 269/605 (44%), Gaps = 73/605 (12%)

Query: 5   IISSDEEEEKGITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           I+    EE   I S+   D M Q  +L YA  VIL RA+P + DGLKPV RRIL  M ++
Sbjct: 62  IMEHSGEESGKIRSIQHLDGMYQKWFLDYASYVILERAVPYVNDGLKPVQRRILHSMREL 121

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A I G  M KYHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  G
Sbjct: 122 D---DGRYNKVANIIGNTM-KYHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTG 173

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E RL K A  L       T +++P+YDG  +EP+ L  ++P +L  G  GI
Sbjct: 174 DGAAAPRYIEARLSKFA--LEVVFNPKTTNWKPSYDGRNREPITLPIKFPLLLAQGVEGI 231

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG+A+ I  HN  E++D C+A + +         + +  PDFPTG +I       + Y 
Sbjct: 232 AVGLASKILPHNFNELIDACIAHLKHE--------DFVLYPDFPTGGMI-----DVSKYC 278

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G     ++  + IEK + +R  + +TEIP+    +++++ I +   + +I       D+
Sbjct: 279 DGMRGGNVKIRAKIEKDNNNR-ALKITEIPFGRTTSSLIDSIIKANEKGKIK--IKKIDD 335

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +  +   ++I+L  G S+D  ++ LY +T  +   S N   +   KP    +  IL+   
Sbjct: 336 NTARDVEILIQLAPGVSSDKTIDALYAFTDCELSISPNSCVIEEEKPRFMPISDILRQSA 395

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
                ++    +  L +  +  H      +++  +    RI +     E+   EL+    
Sbjct: 396 DDTVALLKLELEIRLKELLEDLH-----YVSLERIFIEERIYKDKQFEESETMELVIAHV 450

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      L +L  +            +++   + +LE+++ R+     ++  + + SL  
Sbjct: 451 HRRLQPFLPELYRE------------VTDDDVKKLLEIKMKRILKFSSEEADHYIRSLNE 498

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
           EI        +   ++         +K +      R+T I             +    VV
Sbjct: 499 EIAVVK---HNIEHIIPYSIAYYERIKAKYGKGRERKTEIRNFE--------NIEAAKVV 547

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +   Y+ R             +G  G  ++ ++F+      S    V+ F   G  Y 
Sbjct: 548 IANEKLYINR------------EEGFIGTALKKDEFI---CECSDMDDVIVFKKDGTYYV 592

Query: 601 EKVWR 605
            KV  
Sbjct: 593 TKVAD 597


>gi|118638612|gb|ABL09463.1| gyrase subunit A [Clostridium difficile]
          Length = 197

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 117/192 (60%), Positives = 152/192 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPDF 225
           D L++ ++GPDF
Sbjct: 181 DDLIKFVQGPDF 192


>gi|117654165|gb|ABK55513.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  N 
Sbjct: 61  TIDYQDNYDGSEREPIVMXARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNX 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSXGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|110638041|ref|YP_678249.1| DNA topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280722|gb|ABG58908.1| topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 859

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 157/702 (22%), Positives = 282/702 (40%), Gaps = 91/702 (12%)

Query: 1   MTEHIISSDEEEEKGITS----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M + I ++  EE+ G       V +    +N +L YA  VIL RA+P + DGLKPV RRI
Sbjct: 1   MAKDINNNSSEEQSGNEHIHDVVHVNGLYENWFLEYASYVILERAVPHINDGLKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L  M  M    + ++ K A + G  M  YHPHG+A+I DA+  M Q    + LLIE QGN
Sbjct: 61  LHAMRVMD---DGRFNKIANVIGSTMQ-YHPHGDASIGDAIVNMGQ----KDLLIEPQGN 112

Query: 117 FGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +G +  GD  AA RY E RL K A  L     +DT +++ +YDG  +EPV L  ++P +L
Sbjct: 113 WGDIRTGDSAAAPRYIEGRLSKFA--LDVVFNEDTTEWQASYDGRKKEPVTLPVKFPLLL 170

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T +  HN  E+++  +AV+ N   ++         PDF TG  I    
Sbjct: 171 AQGVEGIAVGLSTKVLPHNFVELIEASIAVLKNKKFEI--------FPDFATGGFI---- 218

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G+    +R  + IE    D++ +V+ +IP+     +++E I +     +I  
Sbjct: 219 -DVSNYNEGQKGSRVRVRARIEDM--DKKTLVIKDIPFGTTTTSLIESIVKANDTGKIKI 275

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
                 ++  +   + ++L  G    + ++ LY +T  +S  S N   +   KP   ++ 
Sbjct: 276 KK--VIDNTAKDVEIQVQLLPGTDPGITIDALYAFTECESSISPNACVIVDDKPHFLSVH 333

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+            R    L K   +      L   + +  E + I            
Sbjct: 334 EILRICT---------RQTVDLLKQELQIRRSELLERILFSSLEKIFI----------EN 374

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            + ++       +D++  ID             ++      + E+++ R++         
Sbjct: 375 RIYRKIEECETWEDVLLTIDKGLQPFKKQFYRTITTEDIVRLTEIKIKRISKFDSFK--- 431

Query: 476 ELNSLGI-EIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDC 532
             + L      E  ++  +   ++         +  +      R+T I            
Sbjct: 432 -ADELMRGYSNELKEVEHNLENIIDYSIAYYTGILKKYGKGRERKTEI--------KTFD 482

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           ++   +V   +   Y+ R             +G  G  ++ ++++ D    S    V+ F
Sbjct: 483 VINATVVAANNQKLYINR------------AEGFIGFGLKKDEYICD---CSDIDDVIVF 527

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
              G      V ++       +      I        +  ++    D +S N++   F  
Sbjct: 528 RRDGIC---VVKKIGEKVFVGKDILYAGIFRKGDDRMVYNLISL--DGASGNSMVKRF-- 580

Query: 653 KHGNVRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCT 691
               V R K    ++ N++ K+   +   +   E +SV    
Sbjct: 581 NVMGVTREKEYPLVKANKASKVLYFSANPNGEAETVSVTLTP 622


>gi|313192107|emb|CBX19913.1| gyrase A [Clostridium perfringens]
          Length = 250

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 137/251 (54%), Positives = 189/251 (75%), Gaps = 1/251 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 1   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 120

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 121 VVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 179

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 180 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 239

Query: 369 VVRRTKYLLNK 379
           + RRT++ LNK
Sbjct: 240 ITRRTQFELNK 250


>gi|91217686|ref|ZP_01254643.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
 gi|91184190|gb|EAS70576.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
          Length = 863

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 159/697 (22%), Positives = 293/697 (42%), Gaps = 84/697 (12%)

Query: 1   MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++ +  + E +E         SV +T   Q  +L YA  VIL RA+P + DG KPVHRR
Sbjct: 1   MSDDLDLNPESQEPFDPTAKDESVKVTGMFQEWFLDYASYVILERAVPAIEDGFKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL  M  +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + +LI+ QG
Sbjct: 61  ILHSMKDLD---DGRYTKVANIVGHTMQ-YHPHGDASIGDAIVQIGQ----KDILIDTQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GD  AA RY E RL K A  L       T +++ +YDG  QEPV L  ++P V
Sbjct: 113 NWGNILTGDRAAASRYIEARLSKFA--LEVVFNPKTTEWQISYDGRKQEPVNLPVKFPMV 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T I  HN  E++D  +  ++     +         PDF TG +    
Sbjct: 171 LAQGAEGIAVGLSTKILPHNFIELIDASIKHLEGKRFTI--------FPDFATGGI---- 218

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               + Y  G     IR  + IE    D+  +V+ EIPY  N + +++ I +     +  
Sbjct: 219 -ADVSNYNDGLRGGKIRVRATIEV--KDKNLLVINEIPYSTNTSTLIDSILK--ANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      +++ L    S D  ++ L+ +T+ +   S     +   KP    +
Sbjct: 274 IKIKKIEDNTSSDVEILVHLPNNISPDKTIDALFAFTNCEVSISPLSCVIIDDKPHFLGM 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       E++    +  L +  ++ H         A+L+++    R   + E   
Sbjct: 334 SELLRMSTENTVELLKTELEIKLGELEEQWH--------FASLEKIFIEKRIYRDIEE-- 383

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
               + +W+      +ID ID             ++      + E+R+ R++    D   
Sbjct: 384 ----EETWDG-----VIDAIDRGLQPHIKHLKRDITRDDISRLTEIRIKRISKFDLDKAD 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDC 532
            ++ +L  +I+     L     L+         +K++      R+TRI          + 
Sbjct: 435 QKIEALEADIEAVKQDL---DHLIDYSINYFKMLKEKYGKGKERKTRIQ-------LFED 484

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I    +V+  + L YV R+            +G  G  M+ +++VTD    S    ++ F
Sbjct: 485 IEASKVVIRNTKL-YVNRI------------EGFIGTSMKKDEYVTD---CSDIDDIICF 528

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G      V ++   +   +    + I        I  ++ + + ++ ++++     T
Sbjct: 529 TEDG---TMMVSKVEGKTFIGKNILYVGIFKKKDKRTIYNLI-YKDGKAGFSHMKRFAVT 584

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
                +   + +     +    +   +   E+++V  
Sbjct: 585 SITRDKAYSMGNDKPGTKVLYFSCNPNGEAELVTVFL 621


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 108/520 (20%), Positives = 214/520 (41%), Gaps = 41/520 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V   KK V
Sbjct: 689  DHTTDEITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFKRNV---KKDV 744

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 745  KVAELSGYVLGMTAYQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 804

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +  +  + +  + DG   EP +     P +L+NG  GI  G +
Sbjct: 805  PRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWS 863

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++                P  P      G TG   +    R  
Sbjct: 864  TSIPNYNPEEIVANLKRLMAGE-------------PLVPMEPWFRGFTGEVVSMGGERYK 910

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     ++ +TE+P +       +++ E+++ +++   I D +D +   
Sbjct: 911  FSGR------ISQIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHT 964

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+L    +   I   L  ++   +++ + N+VA +  G   +  ++  IL+ F +
Sbjct: 965  KVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVEEILREFFS 1024

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     +   A  V  + +   +I   P  +  R EL ++ + 
Sbjct: 1025 VRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVR-ELKEKGFK 1083

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELN 478
                        +++  +  D      + Q        +L + L  LT    + +R ++ 
Sbjct: 1084 PFAKVSDAAAKGENAPVVEEDEDDDGEDTQIAANSYDYLLGMPLWSLTKERVEKLRRQIG 1143

Query: 479  SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRR 517
                EI   +  LS        +   L   K +L+   RR
Sbjct: 1144 DKETEIDTLIK-LSKEDIWTADLDDFLAEWKFQLEDEERR 1182


>gi|332043817|gb|EGI80012.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
          Length = 907

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 166/700 (23%), Positives = 290/700 (41%), Gaps = 90/700 (12%)

Query: 1   MTEH-----IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MTE         + E +E   T   IT   +  +L YA  VIL RA+P + DG KPV RR
Sbjct: 1   MTEDQNDDLTNENLENQEPQETITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I+  M  +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QG
Sbjct: 61  IMHSMKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GD  AA RY E R+ K    L         +++ +YDG  +EPV L   +P +
Sbjct: 113 NWGNILTGDRAAASRYIEARISKFG--LDVVYNPKITEWQQSYDGRRKEPVNLPVMFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  GG GIAVG++T I  HN  E+++  +  +      L         PDFPT  +    
Sbjct: 171 LAQGGEGIAVGLSTKILPHNFIELIEASIKHLQGKRFTL--------VPDFPTAGI---- 218

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               + Y  G     +R  + I +   D+  + +TEIPY    +++++ I +     +  
Sbjct: 219 -ADFSNYNDGLRGGKVRVRAKISQV--DKTTLAITEIPYGTTTSSLIDSILK--ANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      ++I L  G S D  ++ LY +TS +S  S     +   KP    +
Sbjct: 274 IKIKKIEDNTAAEVEILIHLPSGLSPDKTIDALYAFTSCESSISPLGCVIEDNKPLFIGV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       +++ +  +  L +  ++ H      I + N     RI R         
Sbjct: 334 TEMLRRSTDNTVQLLKQELEIKLGEFEEQWHFASLERIFIEN-----RIYRDIEE----- 383

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
               + +W+      +I+ ID             ++      + E+R+ R++    D  +
Sbjct: 384 ----EETWDG-----VINAIDKGLQPHIKHLKRAVTVEDITRLTEIRIKRISKFDIDKAQ 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDC 532
            ++++L  +I E    L++   L+         +K E      R+T I            
Sbjct: 435 QKIDALEEQIAEVKHHLAN---LIDYAIAYFSRLKKEYGEGKERKTEIRAFED------- 484

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V    VV  +   YV R             +G  G  +R +++V D    S    ++ F
Sbjct: 485 -VDATKVVIRNTKLYVNR------------EEGFIGTSLRRDEYVCD---CSDIDDIIAF 528

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G +   KV      S    GK +I++    + ++ T       D +   +    FA 
Sbjct: 529 TASGKMMVTKV-----DSKTFIGKNIIHVAVFKKKDKRTIYNMIYRDGTKGASYIKRFAV 583

Query: 653 KHGNVRRNKLSDFIQINRSGKI---AMKLDSRDEILSVET 689
               + R++  D    ++  K+   +   +   E++SV  
Sbjct: 584 TS--MTRDREYDLTNGSKGSKLWYFSANPNGEAEVISVFL 621


>gi|190351702|gb|ACE76308.1| GyrA [Clostridium difficile]
          Length = 192

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 152/192 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHGN A+Y
Sbjct: 1   SVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
            A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+
Sbjct: 61  YAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFK 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +D
Sbjct: 121 PNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVD 180

Query: 215 ALMEIIRGPDFP 226
            L++ ++GPDFP
Sbjct: 181 DLIKFVQGPDFP 192


>gi|31745485|gb|AAP55216.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 109/176 (61%), Positives = 142/176 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|31745499|gb|AAP55223.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 109/176 (61%), Positives = 141/176 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 176


>gi|121822733|gb|ABM65605.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 188

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/188 (61%), Positives = 150/188 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEI 219
            ++ LME 
Sbjct: 181 SIEGLMEH 188


>gi|223936082|ref|ZP_03627996.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
 gi|223895304|gb|EEF61751.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
          Length = 701

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 134/506 (26%), Positives = 229/506 (45%), Gaps = 54/506 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +   M  S+L YA  VI  RAIP+L DGLKPV RRIL+ + +     + +++K A 
Sbjct: 56  VETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHEKD---DGRFIKVAT 112

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           ISG     YHPHG AAI DAL  +    + R  LIEGQGNFG++  GDP AA RY ECRL
Sbjct: 113 ISGHCAQ-YHPHGEAAIGDALVVIT---NKRY-LIEGQGNFGNIYTGDPAAAPRYIECRL 167

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A    +    +  +F P+YDG  +EPV L ++ P +L+ G  GIAVGM+  I  HN 
Sbjct: 168 TELAR--NELFNDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHNF 225

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+++  +A++      +         PDFPTG ++  R      YA G+GSI +R    
Sbjct: 226 PELLEAQIAILKKQPFKV--------LPDFPTGGLMDARE-----YADGKGSIKVRAKIK 272

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
               + D   +V+ EIP      +++  I +  R+ +I   +   ++   +   + I+  
Sbjct: 273 ----AKDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIKIKS--INDFTSEEAEIEIKAP 326

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
            G SAD +++ LY +T  +   S  ++ +   +P   T+  +L+   A   + + R  + 
Sbjct: 327 SGVSADQLIDALYAFTDCEMSISSRIIVIRNNRPVEMTVSEVLRENTAQLVDTLKRELEL 386

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              K ++  H    + I +                      + ++       + + + + 
Sbjct: 387 KEKKLQEELHFKTLVRIFI-------------------ENRIYKKIEQCKTNEAVYEAVY 427

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D       +    L +     +L +R+ R++    +  R E++ +     +  +      
Sbjct: 428 DGFKPFRKEMIRDLVDTDVEMLLGVRIRRISLFDINKHREEIDKIKA---DLSETAKHLK 484

Query: 496 RLLGIIKQELLSVKDELD--TPRRTR 519
            L       L ++ ++     PR T+
Sbjct: 485 NLTKYAIGRLEALLEKYGPIYPRLTK 510


>gi|298208511|ref|YP_003716690.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
 gi|83848434|gb|EAP86303.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
          Length = 897

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 165/730 (22%), Positives = 294/730 (40%), Gaps = 91/730 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           + +++   + E  +      +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M
Sbjct: 19  LNDNLEQPELEPTQDDVLTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSM 78

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 79  KDLD---DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQVGQ----KDLLIDMQGNWGNI 130

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  L         D++ +YDG  +EP+ L  R+P +L  G 
Sbjct: 131 LTGDRAAASRYIEARLSKFA--LEVLFNPKITDWQLSYDGRRKEPINLPVRFPLLLAQGA 188

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E++D  +  +      +         PDF TG    G   I N
Sbjct: 189 EGIAVGLSTRILPHNFIELIDASIKHLQGKRFKI--------YPDFQTG----GEADISN 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  +  D+  ++++EIPY      +++ I +     +       
Sbjct: 237 -YNDGLRGGKVRVRAKI--SQQDKNTLLISEIPYGTTTTTLIDSILK--ANDKGKIKIKK 291

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      +++ L    S D  ++ LY +T  +   S     +   +PE   +  IL+
Sbjct: 292 IEDNTAANVEILVHLPPNISPDKTIDALYAFTRCEESISPLSCIIINNRPEFIGVSEILR 351

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                   ++    +  L++   + H      I + N     RI R     ET       
Sbjct: 352 RSTDHTVSLLKSDLEIKLDELESQWHYASLERIFIEN-----RIYRDIEEEETW------ 400

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                   + +I  ID       +     ++E     + E+R+ R++    D  + ++++
Sbjct: 401 --------EGVIQAIDKGLKPHTAHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDA 452

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVRED 537
           L  +I+E    L     L+        ++K +      R+T +          + I    
Sbjct: 453 LEDQIEEVKHHL---DHLVEFAINYFANLKKDYGKDKDRKTELKA-------FEDIEATK 502

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V+  + L YV R             +G  G  ++ +++VTD    S    ++ F+  G 
Sbjct: 503 VVIRNTKL-YVNR------------AEGFIGTSLKRDEYVTD---CSDIDDIICFTEDGT 546

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +   KV      S    GK +I++    + ++ T       D  S N     FA      
Sbjct: 547 MMVTKV-----DSKTFIGKNIIHVAVFKKKDKRTIYNMIYRDAKSRNTYMKRFAVTSMTR 601

Query: 658 RRN-KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            R   +    +  +    +   +   E+++V             ++GQ  +         
Sbjct: 602 DREYNMGSDKKNTKVFYFSANPNGEAEVVTVYLR----------QVGQVKKLKFEVDFSD 651

Query: 717 AGRNSVGVRG 726
                 GV+G
Sbjct: 652 MAIKGRGVKG 661


>gi|313621658|gb|EFR92451.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           S4-378]
          Length = 192

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/190 (60%), Positives = 148/190 (77%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVV 199
           IPTH+LGEV+
Sbjct: 183 IPTHHLGEVI 192


>gi|213618945|ref|ZP_03372771.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 288

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 138/288 (47%), Positives = 187/288 (64%), Gaps = 9/288 (3%)

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDRE 264
           IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE
Sbjct: 1   IDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRE 60

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+KR A  +V+L
Sbjct: 61  TIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL 120

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRA
Sbjct: 121 NNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRA 180

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG-- 442
           H+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++   D +      
Sbjct: 181 HILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWL 240

Query: 443 ------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 241 EPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 288


>gi|121822772|gb|ABM65607.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 116/188 (61%), Positives = 150/188 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEI 219
            ++ LME 
Sbjct: 181 SIEGLMEH 188


>gi|291533756|emb|CBL06869.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 88/336 (26%), Positives = 158/336 (47%), Gaps = 62/336 (18%)

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ED+V ++ I STH ++LFF++ G VY+ K + +P     A+G A++N+L L + E
Sbjct: 1   MGTKEEDYVENMIITSTHNTILFFTNKGLVYQLKGYEIPESGRTAKGTAIVNLLPLAKEE 60

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSV 687
            IT I+P  E      + Y+  AT+HG V++  LS+F     ++G IA+ L   DE++ V
Sbjct: 61  TITAIIPIKE---FSKDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGV 117

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +       I++ T+ G  + F    +R    R + GV GI L   D VI M  +      
Sbjct: 118 KLTDGNRQIIIGTRDGMSICFNEQDVRPMG-RTARGVIGIKLKGEDTVIGMDNIRDD--- 173

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               +LTV+E G
Sbjct: 174 --------------------------------------------------CEVLTVTEHG 183

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           FGKRT++ ++R   R G G+    V++  + G ++ +  V+   + +L+S +G +IR  +
Sbjct: 184 FGKRTATSEYRTQTRGGIGLINIKVTE--KTGFVIGIKVVDSQQEFMLISTEGIVIRSNI 241

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVE--RIRESE 901
            E+ +  R T+GV + +   +++V ++    I+E +
Sbjct: 242 EEVSVIGRNTQGVKMMNMDNNDKVAALAAFEIKEDD 277



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLF 581
           G   +   D I  +  V+TV+  G+ KR   S YR Q RGG G   + + ++  FV  + 
Sbjct: 160 GEDTVIGMDNIRDDCEVLTVTEHGFGKRTATSEYRTQTRGGIGLINIKVTEKTGFVIGIK 219

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V +    +  S+ G V +  +  + +     +G   + +++++  +++  +  F   E 
Sbjct: 220 VVDSQQEFMLISTEGIVIRSNIEEVSVIGRNTQG---VKMMNMDNNDKVAALAAFEIKED 276

Query: 642 SW 643
             
Sbjct: 277 DK 278


>gi|124009385|ref|ZP_01694063.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
 gi|123985047|gb|EAY24998.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
          Length = 663

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 147/583 (25%), Positives = 248/583 (42%), Gaps = 73/583 (12%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I++  ++ +L YA  VIL RA+P   DGLKPV RRIL  M +M    + +Y K A +
Sbjct: 7   KVTISEVYKDWFLDYASYVILERAVPSGYDGLKPVQRRILHAMKEMD---DGRYNKVANV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD-GDPPAAERYTECRLQ 136
            G+ M  YHPHG+A+I DAL  M Q    + LL++ QGN+G ++ GD  AA RY E RL 
Sbjct: 64  IGQAMQ-YHPHGDASIGDALVNMGQ----KDLLVDTQGNWGDINTGDSAAAPRYIEGRLS 118

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG+AT +  HN  
Sbjct: 119 KFA--LDVIFNPQTTEWQLSYDGRKKEPVNLPVKFPLLLAQGTEGIAVGLATKVMPHNFN 176

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++D  + ++   ++ +         PDF TG  +         Y  G     +R    I
Sbjct: 177 ELIDASIELLRGNEVTI--------YPDFATGGTM-----DVTNYRHGVKGGRLRVRVDI 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+ S  R+ + +  +PY V    ++E I +     +I        ++  +   + + L  
Sbjct: 224 EQVS--RKILAIKNVPYGVTTENLIESIKKANDANKI--KVKKIIDNTAKDVEIQVHLST 279

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   +  ++ LY +T+ +   S N   +   KP    +  +LK        +  ++TK L
Sbjct: 280 GVEPEQTIDALYAFTNCEVSISPNACVILDDKPCFIKVEELLK--------INTQKTKDL 331

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L +        +   +  ++L+++    R   + E                + +++ ID 
Sbjct: 332 LEQELLIRKSELQEKMLYSSLEKIFIENRIYRDIEE-----------CETWEAVLETIDK 380

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                  D    + E     + E+++ R++          +  LG E+ E    L S   
Sbjct: 381 GLNPFKQDFYREIGEEDLIRLTEIKIKRISKFDSFKADELMKRLGDELAEVERNLKS--- 437

Query: 497 LLGIIKQELLSVKDELDTPR-RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L     +    +K +    R R  I++   D+           VV  +   YV R     
Sbjct: 438 LTKYAIRYFRELKKKYGKDRERRTIIQEFEDI-------NAKDVVINNQKLYVNRED--- 487

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                    G  G  ++ +++V D    S    V+ F   G  
Sbjct: 488 ---------GFIGYGLKKDEYVVD---CSDIDEVITFCEDGKY 518


>gi|328957565|ref|YP_004374951.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673889|gb|AEB29935.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 470

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 117/540 (21%), Positives = 222/540 (41%), Gaps = 94/540 (17%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++A++  + EV+ RRT Y L KA  R H++ GL  A++ LD+V+  IR S + + A+  
Sbjct: 1   MIEAYLEHKREVLTRRTNYNLRKAESRQHIVSGLIKALSILDQVIDAIRSSKDKKNAKEN 60

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L++R                             +E+Q  AI+ L+L RLT      + NE
Sbjct: 61  LIER--------------------------FDFTEIQAEAIVSLQLYRLTNTDITALENE 94

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIV 534
             +L   I     ILSS   L  ++K+EL  VK    +PR T I +    L ++ E  I 
Sbjct: 95  AAALSRAIISYNKILSSSKELDKVMKKELAEVKKNYASPRLTVIQDQIEELKIDTEVLIA 154

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+++V+V+  GY+KR  L  Y A +    G     +++ D+   +  ++T   +L F+S
Sbjct: 155 SEEVIVSVTKEGYIKRTSLRSYGASKPNELG-----IKEGDYPLYIQQLNTLNHLLIFTS 209

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +    V  +     +  G+ L   ++ +  E +  +                F TK 
Sbjct: 210 KGNIIYRPVNEISDLRWKDMGEHLSQNIAFSADETVVKVFGIT---QQLPQATFTFITKE 266

Query: 655 GNVRRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRF 708
           G +++  +S+++      N+S        + DE++++         D+ L T  G  +R+
Sbjct: 267 GYIKQTAVSEYVIGRNYKNKSFSAIKLKTATDELINIIHTENPLLKDVFLVTHRGFGLRY 326

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +  + V     + GV+ I+L +GD VI+  ++                           
Sbjct: 327 SLEEVPVVGS-KAAGVKSINLKEGDYVINGVLI--------------------------- 358

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                  +++  ++ ++ ++ +G  K+ +  DF    R+ +G+ 
Sbjct: 359 -----------------------DVEASKKELMILTHRGSIKKMNILDFESLGRAKRGLL 395

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                K N    +   F V+  D  ++++ KG  I +      I+ R + G  I     D
Sbjct: 396 LLRELKKNPH-RVAFAFEVSKEDHYVILTSKGKEIPLSSASYAISDRYSNGSFILDEVAD 454



 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 100/256 (39%), Gaps = 12/256 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G ++R  L  +     +    + +   D  L ++     N +L+ T  G  + 
Sbjct: 159 IVSVTKEGYIKRTSLRSYGASKPNE---LGIKEGDYPLYIQQLNTLNHLLIFTSKGNIIY 215

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISM----AIVLHADADYDERICYMKHMSA 760
            P++ I        +G    + I+ +  + V+ +      +  A   +  +  Y+K  + 
Sbjct: 216 RPVNEISDL-RWKDMGEHLSQNIAFSADETVVKVFGITQQLPQATFTFITKEGYIKQTAV 274

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
              +I  + +  +          +             + +  V+ +GFG R S  +  + 
Sbjct: 275 SEYVIGRNYKNKSFSAIKLKTATDELINIIHTENPLLKDVFLVTHRGFGLRYSLEEVPVV 334

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                G+++ ++ + + +   V +       ++++++ +G++ ++ + +     RA +G+
Sbjct: 335 GSKAAGVKSINLKEGDYVINGVLIDVEASKKELMILTHRGSIKKMNILDFESLGRAKRGL 394

Query: 881 VIFS-TAKDERVVSVE 895
           ++     K+   V+  
Sbjct: 395 LLLRELKKNPHRVAFA 410



 Score = 38.8 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            + L   E+ I++V+++G+ KRTS   +  S  +  GI+        E    + +  +N 
Sbjct: 149 TEVLIASEEVIVSVTKEGYIKRTSLRSYGASKPNELGIK--------EGDYPLYIQQLNT 200

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSV 894
            + +++ + KG +I  PVNEI        G  +    + + DE VV V
Sbjct: 201 LNHLLIFTSKGNIIYRPVNEISDLRWKDMGEHLSQNIAFSADETVVKV 248


>gi|255535416|ref|YP_003095787.1| DNA topoisomerase IV subunit A [Flavobacteriaceae bacterium
           3519-10]
 gi|255341612|gb|ACU07725.1| Topoisomerase IV subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 868

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 129/523 (24%), Positives = 228/523 (43%), Gaps = 58/523 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E     +   E+ +  VS     ++ +L YA  VIL RAIP + DG KPV RRI+  M
Sbjct: 2   MEEQ----ENHHEESLKKVS--GLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 56  RELE---DGRYNKVANLVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDMQGNWGNI 107

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL   A  L       T  +  +YDG   EP+ L  ++P +L +G 
Sbjct: 108 YTGDSAAAARYIEARLTPFA--LEVVFNPKTTHWVKSYDGRNNEPIDLPVKFPLLLASGV 165

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI VG++T I  HN  E+++  +A + N   +L         PDF TG ++       +
Sbjct: 166 EGIGVGLSTKIMPHNFNELINASIAHLKNKSFEL--------YPDFLTGGML-----DVS 212

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     IR  + I     ++  + +TE+P+  N   +++ I +   + +I      
Sbjct: 213 NYNDGERGGRIRTRARI--IQKEKNTLCITELPFGKNTGDLIDSIIKANEKGKIK--IKK 268

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      + I L    S D  ++ LY +T  +   S N   + G +PE  T+  IL+
Sbjct: 269 IEDNTSDKVEINIHLNSDVSPDKTIDALYAFTDCEIPISPNACVIVGNRPEFLTVSEILR 328

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                   ++ +  +  L++ +++ H      I +                     E+ Q
Sbjct: 329 RNTDHTVSLLKKELEIELHELQEKWHFASLEKIFI-------------------ENEIYQ 369

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S  +++   +D        +    ++      + EL   R++   +D     L +
Sbjct: 370 EIKGKSSKEEVYTAVDKGLKPFTGNLLRAVTTDDIIKLTELPFMRISRYDQDKAIENLLA 429

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRI 520
           L  +I++    L +   L+         ++ +      R+T +
Sbjct: 430 LEAKIEQVKYHLDN---LVAYAIDYFTGIQKKFGKGKERKTEL 469


>gi|312130258|ref|YP_003997598.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
 gi|311906804|gb|ADQ17245.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
          Length = 868

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 152/694 (21%), Positives = 283/694 (40%), Gaps = 87/694 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E       ++E       + D  +  +L YA  VIL RA+P + DGLKPV RR L  +
Sbjct: 1   MSEENYDPAPQKEL------LDDMFEKYFLEYASYVILERAVPAIEDGLKPVQRRFLHAL 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + ++ K A + G  M  YHPHG+A+I DA+  + Q    + LL++ QGN+G V
Sbjct: 55  KEMD---DGRFNKVANVIGSTMQ-YHPHGDASIGDAIVNIGQ----KELLLDIQGNWGDV 106

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K  H +L    +DT +++ +YDG  +EPV L A++P VL  G 
Sbjct: 107 RTGDSAAAPRYIEVRLSKFGHEVL--FNEDTTEWQMSYDGRKREPVTLPAKFPLVLEMGA 164

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+ +  +  + N           +  PDF TG +I       +
Sbjct: 165 EGIAVGLSTKILPHNFIELCEASIKYLKNE--------PFVLYPDFLTGGLI-----DVS 211

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     ++  + I +   D++ + +TEIP+     +++E I +     +I      
Sbjct: 212 NYNDGARGGKVKMRAKISEV--DKKTLKITEIPFSTTTGSLIESIIKANDSGKIKIKK-- 267

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++  +   ++I L    S D+ ++ LY +T+ +   S N V +   KP    +  ILK
Sbjct: 268 VEDNTAKNVEIIIHLAPNTSTDITIDALYAFTNCEVSVSPNAVVIVDQKPHFLGVSDILK 327

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       +T +LL +  +     +   I  ++L+++    R   + E        
Sbjct: 328 --------NSTDQTLHLLRRELEIRKGELLEKILYSSLEKIFIENRIYRDIEE------- 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                   + +I+ ID        D    +       + E+R+ R++           + 
Sbjct: 373 ----CETFESVIETIDKGLEPYKKDFYREIGREDIIRLTEIRIKRISKYDSFK----ADE 424

Query: 480 LG-IEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRE 536
           L   + +E +++    + ++         +  +      RRT IV+           V+ 
Sbjct: 425 LMRKQQEELVEVNDHLNNMVRYTINFFKELIRKYGKGRERRTEIVQ--------FGEVQA 476

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +V   +   YV +              G  G  ++ +++V D    S    ++ F + G
Sbjct: 477 AVVAANNQKLYVDK------------ENGFIGYGLKKDEYVMD---CSDIDDIIVFRADG 521

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
                 V ++       +      +   N   +I  ++   + +S          T    
Sbjct: 522 KF---SVVKIQDKVFVGKNIIYCAVFRKNDERKIYNVIYL-DGKSGRTFAKRFAVTGVTR 577

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
            +   ++     ++    +   +   E+++V   
Sbjct: 578 DKEYDVTKGSPRSKVLYFSANENGEAEVVTVNLT 611


>gi|145629331|ref|ZP_01785130.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978834|gb|EDJ88557.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 187

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 116/191 (60%), Positives = 145/191 (75%), Gaps = 7/191 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIP 191
           GIAVGMATNIP
Sbjct: 174 GIAVGMATNIP 184


>gi|284037117|ref|YP_003387047.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
 gi|283816410|gb|ADB38248.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
          Length = 904

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 126/532 (23%), Positives = 243/532 (45%), Gaps = 59/532 (11%)

Query: 1   MTEHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           +T+ ++  ++  +           ++   +N +L YA  VIL RA+P + DGLKPV RRI
Sbjct: 28  LTDDLVPEEQPIDTKTEVLHDQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRI 87

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L  + +M    + ++ K A + G+ M  +HPHG+A+I +AL  + Q    + LL + QG+
Sbjct: 88  LHALKEMD---DGRFNKVANVIGQTMQ-FHPHGDASIGEALVNIGQ----KELLFDTQGS 139

Query: 117 FGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +G V  GD  AA RY E RL K A          T +++ +YDG  +EP+ L  ++P +L
Sbjct: 140 WGDVRTGDGAAAPRYIEVRLSKFAQ--DAIYNDKTTEWQLSYDGRKREPITLPVKFPLLL 197

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T I  HN  E++D  + ++ +  + L         PDF TG +I    
Sbjct: 198 AQGVEGIAVGLSTKILPHNFNELIDASINILKDKPVSL--------FPDFQTGGLI---- 245

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G     +R  + IE+   D++ + + ++PY V  + +++ I +     +I  
Sbjct: 246 -DVSNYNDGHRGGKVRVRAKIEEV--DKKILAIRDVPYGVTTSQLIDSIVKAAELGKIRI 302

Query: 296 IADLRD-----ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            A  R+     ++  +   +++ L+ G S DV ++ LY +T  +   S N   + G KP 
Sbjct: 303 KAPSRNVAAVVDNTAKDVEILVHLQPGVSPDVTIDALYAFTDCEVSISPNACVIIGDKPH 362

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             ++  IL+        V   +T +LL +  +     +   +  ++L+++          
Sbjct: 363 FVSVTDILR--------VNTHQTVHLLQRELEIRRSELMERLLYSSLEKIF--------- 405

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                 + ++       + +++ ID +           +++     + E+++ R++    
Sbjct: 406 --IENRIYRKIEECETFEAVLEAIDKALKPHKKLFYRVITQDDLIRLTEIKIKRISKYDG 463

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRI 520
                 +  L  E+ E  D L++ +R           ++ +      R+T I
Sbjct: 464 FKAEELMRRLEQELAETEDNLANITR---FAIAYYKDLQKKYGKGRERKTEI 512


>gi|108711710|gb|ABF99505.1| DNA gyrase subunit A, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215765245|dbj|BAG86942.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 356

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 104/392 (26%), Positives = 178/392 (45%), Gaps = 63/392 (16%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           M++ +S  GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G 
Sbjct: 1   MLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGI 60

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G +
Sbjct: 61  VYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNE---FGEDQYLVMLTVNGYI 117

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+ F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R   
Sbjct: 118 KKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALG 177

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV  + L +GD++ SM I+                                    
Sbjct: 178 -RKTRGVLAMKLKEGDKMASMDII------------------------------------ 200

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +   N+ E   +   L   ++L +++ G GKR     FR  N +  G++   +     
Sbjct: 201 -PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPD-- 257

Query: 838 IGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +L AVF V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++       
Sbjct: 258 -CSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAG 316

Query: 890 RVVSVERI-----------RESEIVDEAESTE 910
           ++ S   I             + ++ EAE  E
Sbjct: 317 KIQSASLISAAEEEEEQDPESASLISEAEEPE 348



 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 103/278 (37%), Gaps = 33/278 (11%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D  R T IV         +    +  +V ++  GY+K+VPL+ + A R    G   + + 
Sbjct: 89  DGERITSIVP-------VNEFGEDQYLVMLTVNGYIKKVPLNAFSAIRTS--GIISIQLA 139

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +  +        V   S  G V      +L     + RG   +  + L +G+++ +
Sbjct: 140 PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRG---VLAMKLKEGDKMAS 196

Query: 633 IMPFPEDESSWNNLY----------VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDS 680
           +   P    +    Y          ++F   +G  +R  L+ F     NR G    KL  
Sbjct: 197 MDIIPATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPP 256

Query: 681 RDEILSVETC--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + +V             +  ++L ++ G   R  +  I + + R++ GV  + L   
Sbjct: 257 DCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRS-RSARGVILMRLEHA 315

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++ S +++  A+ + ++       +S        D E
Sbjct: 316 GKIQSASLISAAEEEEEQDPESASLISEAEEPEKQDPE 353


>gi|332171254|gb|AEE20509.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 895

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 146/619 (23%), Positives = 266/619 (42%), Gaps = 88/619 (14%)

Query: 1   MTEHIISSDEEEEKGITSVS-------------ITDEMQNSYLTYAINVILGRAIPDLRD 47
           M+E I   +E+EE    ++              ++   ++ +L YA  VIL RA+P + D
Sbjct: 1   MSEEINDHNEDEELNPETLPAEVVDGGGETITRVSGMFEDWFLDYASYVILERAVPSIED 60

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           G KPV RRI   M  +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    +
Sbjct: 61  GFKPVQRRI---MHALKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----K 112

Query: 108 LLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
            LLI+ QGN+G++  GD  AA RY E RL K A  L         +++ +YDG  +EP+ 
Sbjct: 113 DLLIDTQGNWGNILTGDRAAASRYIEARLTKFA--LDVVYNPKITEWQASYDGRKKEPIN 170

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           L   +P +L +G  GIAVG++T +  HN  E++D  +  + +    L         PDFP
Sbjct: 171 LPVMFPMLLASGAEGIAVGLSTKVLPHNFIELIDASIKHLKDKKFTL--------YPDFP 222

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T  +          Y  G     +R  + I  +  D+  +V+TE+P+     ++++ I +
Sbjct: 223 TAGI-----ADFTDYKDGMRGGKVRCRARI--SQQDKNTLVITELPFGQTTTSLIDSILK 275

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
                +        +++      +++ L  G S D  ++ LY +T+ ++  S     +  
Sbjct: 276 --ANDKGKIKIKKIEDNTSANVEILVHLPGGISPDKTIDALYAFTNCETSISPLSCVIEN 333

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            KP    +  +L+      ++++    +  L +  ++ H         A+L+ +    R 
Sbjct: 334 NKPLFVGVTEMLRRSTDRTKDLLKAELEIQLGEFENQWH--------YASLERIFIENRI 385

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
             + E       Q +W+      +I  IDD            ++      + E+R+ R++
Sbjct: 386 YRDIEE------QETWDG-----VIKAIDDGLKPHIGHLKRAVTVEDITRLTEIRIKRIS 434

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGL 524
               D  + ++++L  +I +    L +   L          +K +      R+T I    
Sbjct: 435 KFDIDKAQQKIDALEDQITQVKYHLDN---LTQYAIDYFTRLKKDYGKGKERKTEI---- 487

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
              +  D I    +V+  + L YV R             +G  G  ++ +++VTD    S
Sbjct: 488 ---KIFDDIQAAKVVLRNTKL-YVNR------------AEGFVGTSLKKDEYVTD---CS 528

Query: 585 THTSVLFFSSLGFVYKEKV 603
               V+ F+  G +   KV
Sbjct: 529 DIDDVIVFTKSGTMMVVKV 547


>gi|88802817|ref|ZP_01118344.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
 gi|88781675|gb|EAR12853.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
          Length = 917

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 129/523 (24%), Positives = 226/523 (43%), Gaps = 55/523 (10%)

Query: 3   EHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           E    ++ ++ + + +++ IT   +  +L YA  VIL RA+P L DGLKPV RRI+  M 
Sbjct: 18  EEQSDTENDQTETVETITKITGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMK 77

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++ 
Sbjct: 78  DLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQ----KELLIDMQGNWGNIL 129

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L       T  ++ +YDG  +EP+ L  ++P +L  G  
Sbjct: 130 TGDRAAASRYIEARLSKFA--LDVVFNSKTTAWKQSYDGRRKEPIDLPVKFPLLLAQGAE 187

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVG++T +  HN  E++D                M+ ++G  F      I G      
Sbjct: 188 GIAVGLSTKVLPHNFIELIDAS--------------MKYLKGRSFKILPDFITGGIADFT 233

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I +   D++ +V+ EIP+      +++ I +   + +I      
Sbjct: 234 NYNDGVRGGKVRVRARIAQL--DKKTLVINEIPFGTTTTTLIDSIIKANEKGKIK--IKK 289

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      +++ L    S D  ++ LY +TS ++  S     +   KP    +  +LK
Sbjct: 290 IEDNTAAEVEILVHLPPNVSPDKTIDALYAFTSCENSISPLSCTIEDNKPVFVGVSEMLK 349

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                  +++ +  +  LN+  ++ H      I + N     RI R     ET    L  
Sbjct: 350 HSTDLTVDLLKKELEIQLNELEEQWHFSSLERIFIEN-----RIYRDIEEEETWEGVLNA 404

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +         +                 + E     + E+R+ +++    D  +  +  
Sbjct: 405 INLGLQPHIKHLKRA--------------IVEEDIARLTEIRIKKISKFDIDKAKQFIEG 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRI 520
           L  +I      L++   L+         +KD       R+T +
Sbjct: 451 LEAKIAIVTAHLAN---LIEFAIAYFKRLKDTYGAGKERKTEV 490


>gi|298373528|ref|ZP_06983517.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274580|gb|EFI16132.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 905

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 144/589 (24%), Positives = 247/589 (41%), Gaps = 69/589 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI        + +   +IL RAIP + DGLKPV RR+L+ M +M    + +Y K A + G
Sbjct: 45  SIGGMFYKWQMDFGSYIILNRAIPHINDGLKPVQRRVLYSMRRME---DGRYNKVANVVG 101

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M  +HPHG+++IY AL  + Q    + +LI+ QGN+G++  GDP AA RY E RL + 
Sbjct: 102 HTMQ-FHPHGDSSIYGALVGLGQ----KNILIDTQGNWGNILTGDPAAAARYIEARLSRF 156

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  L       T +++P+YDG   EPV L  ++P +L  G  GI  G+ T I  HN  E+
Sbjct: 157 A--LDTVFNPKTTEWKPSYDGRNDEPVALPVKFPLLLAQGSEGIGYGLNTKILPHNFNEL 214

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  +           E    PDFPTG +I       + Y  G     +    +I  
Sbjct: 215 IDATILYLQGK--------EFCLYPDFPTGGMI-----DVSRYNDGERGGKVMMRVNI-T 260

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            S D + +++  +PY ++ A ++E I +   + +I       D++  +G  +++ L+   
Sbjct: 261 KSADNKSLIINNVPYGLDTAKLIESIIQANEKGKINIKK--IDDNTAEGVEIILHLEAKT 318

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S D  ++ LY +T  Q+ +S N   ++  KP   T+  +L+             T  LL 
Sbjct: 319 SLDKTIDALYAFTDCQTQYSPNCCVIDNNKPVFVTVSEVLRRSAD--------NTVGLLR 370

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  D     +   +  A+L+++    R   +PE           NA      +  ID   
Sbjct: 371 KELDIERHELSEQLLFASLEKIFIEERIYKDPE---------FENAKSEDIALKHIDRRI 421

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                D    ++    R +L++R+AR+     D     + ++   I+E    L +   ++
Sbjct: 422 EPYKKDFVRTVTRDDLRKLLDIRMARILKFNTDKAEANIAAIRGAIEEVDYKLDN---II 478

Query: 499 GIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
               +    +K        R+T I         +     E + V+               
Sbjct: 479 EHSIKWFEYLKKTYGKNYQRQTEIRSFENIEATKVVEANEKLYVSR-------------- 524

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                  +G  G  ++ E+ +  +   S    V+ F   G     K+  
Sbjct: 525 ------KEGFVGTNLKKEEDIEFVQNCSDIDDVIVFFKDGKYKVVKISE 567


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 111/523 (21%), Positives = 205/523 (39%), Gaps = 46/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  +  + K V
Sbjct: 705  DHSVDKITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFRRNLRKDMKVV 763

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 764  ELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASA 821

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 822  RYIYTRLSPFARRVFHAADDPLLTYNED-DGKKIEPEVYVPVVPMILINGADGIGTGWSS 880

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D               P  P      G TG   A    R   
Sbjct: 881  SIPNYNPEDIVDNLKRLMDGQ-------------PVKPMQPWFRGFTGEVTALGGDRFKF 927

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ E+++ ++    I D +D +    
Sbjct: 928  -----SGIIKETGDKE-VEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTK 981

Query: 308  YRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               VI++         +  L + ++ +   +  ++      G   +  ++  ILK F A 
Sbjct: 982  VHFVIQMDEKNLQSAREEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVDDILKEFYAV 1041

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y LN+ +     L   A  V  + +   +I     P              
Sbjct: 1042 RLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISKKKKPALVAELKKHGFKAF 1101

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + D +   +D+      +      E +        +L + L  LT    + +R ++  
Sbjct: 1102 PKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGE 1161

Query: 480  LGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
              +EI         DI      L   I +    ++DE    RR
Sbjct: 1162 KEVEIDALIKLSKEDIWKRD--LDDFINEWRFQLEDE---ARR 1199


>gi|325969897|ref|YP_004246088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025135|gb|ADY11894.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 659

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 135/503 (26%), Positives = 219/503 (43%), Gaps = 55/503 (10%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               + ++L YA  VI  RAIPDL DG KPV RRI+  + +M    + K+ K A + G  
Sbjct: 5   HSIFKRNFLEYASYVIKERAIPDLGDGFKPVQRRIIHTLFEMD---DGKFHKVANVVGWA 61

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDGDPPAAERYTECRLQKAAH 140
           M +YHPHG+++IY+AL  +    +   L IE QGNF  S+ GD  AA RY ECRL   A 
Sbjct: 62  M-RYHPHGDSSIYEALVNL----ANCDLFIERQGNFGNSLTGDSAAAARYIECRLLPFAK 116

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L     +  +F  +YDG  QEPVV  A+ P VL+ G  GIAVGM+T I  HN  EV+D
Sbjct: 117 KVL--YNPELTEFVDSYDGRNQEPVVFPAKIPVVLIQGVSGIAVGMSTYILPHNPLEVLD 174

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A +      L         PDF  G ++         Y  GRGS+ +R        +
Sbjct: 175 AMAASLKGESYQL--------YPDFLGGGIV-----DVEDYRDGRGSVSVRAK----LNT 217

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            D ++I++ E+PY     AM+  + E  ++ ++   +   ++   +   + I L R   A
Sbjct: 218 TDPKRIIIEELPYGTTSEAMIRSVEEAAKKGKLKISS--INDYTAEKVNIEINLARNTYA 275

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             I++ LY YT  ++  S+N + +    P    +  IL         V+    +      
Sbjct: 276 QEIVDALYAYTDCETKLSINPLVIRDNVPTIMGVHEILDWHAQHLVVVLKAELELEKGHL 335

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            D+ H     A  +  +    RI +     ++A              ++ +         
Sbjct: 336 LDKLH-----ARTLERIFIEERIYKRIEQKKSAEEVNKAVITGFKPFEEQLFRP------ 384

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   +       +L++ + R++    +  R E++ +   + E    L++   L+G 
Sbjct: 385 --------VVLEDVERLLKIPIRRISLFDIEKNREEIDQINDTVAEIERKLAN---LIGY 433

Query: 501 IKQELLSVKDELD---TPRRTRI 520
               +  +K  L      R+T I
Sbjct: 434 ALSYIAELKTMLGIKEHQRKTTI 456


>gi|229496072|ref|ZP_04389794.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
 gi|229316968|gb|EEN82879.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
          Length = 899

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 147/619 (23%), Positives = 255/619 (41%), Gaps = 76/619 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+    +  +L YA  VIL RA+P + DGLKPV RRIL+ M    +  N    K A+I G
Sbjct: 47  SLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLHKVAKIVG 103

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDGDPPAAERYTECRLQKA 138
           + M  +HPHG+A+I DAL ++ Q    +  LI+ QGN+  ++ GD  AA RY E +L   
Sbjct: 104 QTMA-FHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYIEAKLSSL 158

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  L         +++  YDG+  EPV L  R+P +L  G  GIAVG+++ I  HN  E+
Sbjct: 159 A--LEVLFDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIYPHNPKEL 216

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A +     +L         PDFPTG ++       + Y  G     ++  + IE 
Sbjct: 217 LEAAIAYLRGESFEL--------YPDFPTGGLL-----DVDKYNDGHRGGALKCRAKIE- 262

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D   + +TE+P+     +++E I +   + +I       D+       + I+L  G 
Sbjct: 263 -KIDDRVLSITELPFGKTTTSLIESILKANEKGKIKIK--HIDDMTAATADIRIQLPAGV 319

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           S D  ++ LY +T  +   S N   +    P    +  +LK      +E++V +  Y L 
Sbjct: 320 STDKTIDGLYAFTDCEVGLSPNACVIKEGTPVFLGVSDLLKYSADRTKELLVAQLNYRLG 379

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           + +D         I + N     RI +  P  E A       +     ++  I+ ++D  
Sbjct: 380 EVQDALVTASLERIFIEN-----RIYKDKPFEEAACE-----ADALDHVRKRIEAMEDLV 429

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +         ++E   + +LE+++AR+     +     +  L  + +     L+  +   
Sbjct: 430 FVRP------ITEADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTIEKHLAHST--- 480

Query: 499 GIIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
                    +  E      R+T I             +    V+  +   Y  R      
Sbjct: 481 QYTIDYYTRLLKEFGAGWTRKTTIA--------RFGTIEATKVIEATEKLYFDR------ 526

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
                   G +G  +++ +FV      S    ++     G     ++ ++       RG+
Sbjct: 527 ------EGGFAGTGLKNAEFVA---ECSLLDEMIVIFRNG---TYRISKIEEKKFIGRGE 574

Query: 617 AL-INILSLNQGERITTIM 634
            L IN    N    I  I+
Sbjct: 575 VLYINRFRRNDNRTIYNII 593


>gi|308198937|dbj|BAJ22603.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 193

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 113/191 (59%), Positives = 145/191 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 205 VIDNPDIDLDA 215
           ++DN D  L+ 
Sbjct: 183 LLDNKDASLEE 193


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 111/523 (21%), Positives = 205/523 (39%), Gaps = 46/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  +  + K V
Sbjct: 705  DHSVDKITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFRRNLRKDMKVV 763

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 764  ELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASA 821

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 822  RYIYTRLSPFARRVFHAADDPLLTYNED-DGKKIEPEVYVPVVPMILINGADGIGTGWSS 880

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D               P  P      G TG   A    R   
Sbjct: 881  SIPNYNPEDIVDNLKRLMDGQ-------------PVKPMQPWFRGFTGEVTALGGDRFKF 927

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ E+++ ++    I D +D +    
Sbjct: 928  -----SGIIKETGDKE-VEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTK 981

Query: 308  YRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               VI++         +  L + ++ +   +  ++      G   +  ++  ILK F A 
Sbjct: 982  VHFVIQMDEKNLQSAREEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVDDILKEFYAV 1041

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y LN+ +     L   A  V  + +   +I     P              
Sbjct: 1042 RLKFYERRKQYQLNELQKELDKLTNQARFVQMIIDGDLVISKKKKPALVAELKKHGFKAF 1101

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + D +   +D+      +      E +        +L + L  LT    + +R ++  
Sbjct: 1102 PKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGE 1161

Query: 480  LGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
              +EI         DI      L   I +    ++DE    RR
Sbjct: 1162 KEVEIDALIKLSKEDIWKRD--LDDFINEWRFQLEDE---ARR 1199


>gi|118638610|gb|ABL09462.1| gyrase subunit A [Clostridium difficile]
          Length = 194

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/191 (60%), Positives = 151/191 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPD 224
           D L++ ++GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/519 (20%), Positives = 210/519 (40%), Gaps = 39/519 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V   KK V
Sbjct: 689  DHTTDEITYTDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTCFKRNV---KKDV 744

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 745  KVAELSGYVLGMTAYQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 804

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +  +  + +  + DG   EP +     P +L+NG  GI  G +
Sbjct: 805  PRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWS 863

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++                P  P      G TG   +    R  
Sbjct: 864  TSIPNYNPEEIVANLKRLMAGE-------------PLVPMEPWFRGFTGEVVSMGGERYK 910

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     ++ +TE+P +       +++ E+++ +++   I D +D +   
Sbjct: 911  FSGR------ISQIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHT 964

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+L    +   I   L  ++   +++ + N+VA +  G   +  ++  IL+ F +
Sbjct: 965  KVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVEEILREFFS 1024

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     +   A  V  + +   +I   P  +  R    +    
Sbjct: 1025 VRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVRELKEKGFKP 1084

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGRDDIRNELNS 479
             + + D     +++      +                +L + L  LT    + +R ++  
Sbjct: 1085 FAKVSDAAAKGENAPVVEEDEDDDGEDTEIAANSYDYLLGMPLWSLTKERVEKLRRQIGD 1144

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRR 517
               EI   +  LS        +   L   K +L+   RR
Sbjct: 1145 KETEINTLIK-LSKEDIWTADLDDFLAEWKFQLEDEERR 1182


>gi|117654329|gb|ABK55595.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 218

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 126/217 (58%), Positives = 167/217 (76%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVP 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           E+PYQVNKA ++ KIA+LVR+K+   I D RDESD  
Sbjct: 181 ELPYQVNKARLIXKIADLVRDKKXEGITDXRDESDXN 217


>gi|308198939|dbj|BAJ22604.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 113/191 (59%), Positives = 145/191 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 205 VIDNPDIDLDA 215
           ++DN D  L+ 
Sbjct: 183 LLDNKDASLEE 193


>gi|224458674|gb|ACN43200.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 269

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/292 (44%), Positives = 186/292 (63%), Gaps = 26/292 (8%)

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 1   AYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDL 60

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+
Sbjct: 61  RDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLE 120

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L++
Sbjct: 121 HYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIE 180

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            L+E Q +AIL++RL RLTGL R+ I  E  S
Sbjct: 181 Q--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQS 214

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           L   I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+  +++
Sbjct: 215 LVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDE 266


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 112/580 (19%), Positives = 214/580 (36%), Gaps = 51/580 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +     +S TD +    + +++     R+IP + DGLKP  R++LFG  +  + 
Sbjct: 780  EPGTYLDHSTEKISYTDFVNRELILFSM-ADNIRSIPSMVDGLKPGQRKVLFGCFKQNLI 838

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
             ++K V+ A    +    +H  G  ++   +  +AQ++  S  +  +E  GNFGS    G
Sbjct: 839  HDQKVVELAGYVSKEAAYHH--GEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGG 896

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   RL   A  +   L +  ++F+ + DG   EP V     P VLVNG  GI
Sbjct: 897  SDAASARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGI 955

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T+IP ++  ++V+     +                P  P      G  G      
Sbjct: 956  GTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGE-----EKPFEPMTPWFRGWKGTPEP-- 1008

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRD 301
             G       G+  +E    +  ++ VTE+P ++       K+ E++R  +    I D ++
Sbjct: 1009 DGPNKFKFNGI--VEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKE 1066

Query: 302  ESDRQGYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGIL 358
             +D Q    +I L+    +  + + L  ++   +++ + N+VA +  G   +      I+
Sbjct: 1067 YNDHQTVHFIIALEEKQMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIYKYENPQEIM 1126

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRE 416
            + +  +R  +   R K+ L            L      + E++   +I          +E
Sbjct: 1127 EEYYHYRLNLYGERKKHWLKVYHAD---YRKLQNQYRFISEIIENKLIVAKKKKSVLVQE 1183

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE-----VQTRAILELRLARLTGLGRD 471
            L +R + A   K     +      +G+       +          +L + +  LT    D
Sbjct: 1184 LRERKYEAFPPKSDGRNVKSPDEELGAAENEDEEDAVGGARDYDYLLSMPIWSLTFERLD 1243

Query: 472  DIRN-------ELNS-------------LGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
             ++        E +              L     E  + L     +   I+Q+   V  +
Sbjct: 1244 KLKQQIAAKKAEYDELDALSEKDLWCKDLDAFTAEWEEQLRLEDEVRKEIRQKGRRVSYK 1303

Query: 512  LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                 R +      D ED +   ++           VK  
Sbjct: 1304 GGAVSRLKKPRAAKDDEDFEPGAKKPRAKAAPKAETVKTQ 1343


>gi|118638608|gb|ABL09461.1| gyrase subunit A [Clostridium difficile]
          Length = 195

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 116/191 (60%), Positives = 151/191 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPD 224
           D L++ ++GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 110/577 (19%), Positives = 223/577 (38%), Gaps = 60/577 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V   KK V
Sbjct: 785  DHTTDEITYTDFVNKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFKRNV---KKDV 840

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 841  KVAELSGYVLGMTAYQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 900

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +  +  + +  + DG   EP +     P +L+NG  GI  G +
Sbjct: 901  PRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWS 959

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++                P  P      G TG   +    R  
Sbjct: 960  TSIPNYNPEEIVANLKRLMAGE-------------PLVPMEPWFRGFTGEVVSMGGERYK 1006

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     ++ +TE+P +       +++ E+++ +++   I D +D +   
Sbjct: 1007 FSGR------ISQIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHT 1060

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+L    +   I   L  ++   +++ + N+VA +  G   +  ++  IL+ F +
Sbjct: 1061 KVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDPEGRITKYESVEEILREFFS 1120

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     +   A  V  + +   +I   P  +  R    +    
Sbjct: 1121 VRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVRELKEKGFKP 1180

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGRDDIRNELNS 479
             + + D     +++      +                +L + L  LT    + +R ++  
Sbjct: 1181 FAKVSDAAAKGENAPVVEEDEDDDGEDTEIAANSYDYLLGMPLWSLTKERVEKLRRQIGD 1240

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
               EI   + +  S+  +                        +    + +    + E+  
Sbjct: 1241 KETEIDTLIKL--SKEDIWT---------------------ADLDDFLAEWKFQLEEEER 1277

Query: 540  VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
                     +RV   +  A  +GGK R      D DF
Sbjct: 1278 QQTKRTKSARRVSTKLKTAATKGGKKRKAADDDDSDF 1314


>gi|308198953|dbj|BAJ22611.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 112/191 (58%), Positives = 144/191 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 123 DIDKDTVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 205 VIDNPDIDLDA 215
           ++D+ D  L+ 
Sbjct: 183 LLDSKDASLEE 193


>gi|320537065|ref|ZP_08037044.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
 gi|320146140|gb|EFW37777.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
          Length = 646

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 135/505 (26%), Positives = 236/505 (46%), Gaps = 55/505 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I      ++L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGH 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I +AL  +    + + L I  QGNFG++  GD  +A RY ECR+ +  
Sbjct: 61  CM-KYHPHGDASIGNALVVL----ANKELFISKQGNFGNIYTGDEASAARYIECRITEFG 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL     +   + P+YDG  +EP+V  A+ P VLV G  GIAVGM+T I  HN+ E++
Sbjct: 116 KSLL--YNPNITQYVPSYDGRNKEPLVFRAKIPVVLVIGAEGIAVGMSTKILPHNIKEIL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +  I+     L         PDFPTG +I       + Y  G G +++R        
Sbjct: 174 EAEIQCIEGKPFAL--------YPDFPTGGLI-----DVSEYGDGLGKVLVRAK----LD 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           + D ++I++ E+P+     +M+  I    +  ++       ++   +   + ++L RG  
Sbjct: 217 TSDEKRILIKELPFGSTTESMITSIENASKSGKV--KVSEINDYTAETVEIELKLPRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +  +++ LY +T  +   S N++ +    P++ T+  ++K  V    +++    +Y    
Sbjct: 275 SQDVVDSLYAFTECEQSISCNLLVIKNNLPQQMTVTDVIKNHVKQLLQILKDELEYERAM 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
            ++R H+     I +       RI +     +TA          +  I  ++   +    
Sbjct: 335 LQERLHMRTLERIFIEE-----RIYKKIETMKTA----------SGVITAVLKGFEPFRA 379

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            +       ++E     +L++ + R++    +  R E   +   +KE   +L +   L G
Sbjct: 380 ELIR----DITEDDVDKLLKIPIRRISLYDINKNRQETEEIQKRLKEIAKLLKN---LKG 432

Query: 500 IIKQELLSVKDELDTP---RRTRIV 521
             +  L  +  +LD+    R+T I 
Sbjct: 433 YARSVLEGILAKLDSETVKRKTEIT 457


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/523 (21%), Positives = 215/523 (41%), Gaps = 42/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   ++ V   KK +
Sbjct: 781  DHTTEEITYTDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTCFKLNV---KKDM 836

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG+A++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 837  KVAELSGYVLGLTAYQHGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 896

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +     + +  + DG   EP       P +L+NG  GI  G +
Sbjct: 897  PRYIYTRLSPFARRIFHEADGPLLTYNVD-DGQVIEPETYFPVVPMILINGADGIGTGWS 955

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++             +  P  P      G TG   +    R  
Sbjct: 956  TSIPNYNPEEIVANIKRLM-------------VGEPVVPMQPWFRGFTGEVVSMGGERYK 1002

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     +I +TE+P +       +++ E+++ ++I   I D +D +   
Sbjct: 1003 FSGR------FSQIGDNEIEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHT 1056

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                VI+L    +   I   L  +    ++L + N+VA +  G   +  +   IL+ F +
Sbjct: 1057 KVHFVIQLDEKHAKKAIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPEHILQEFYS 1116

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     L   A  V  + +   +I   P      +EL ++ + 
Sbjct: 1117 VRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMIIDGKLVISKKP-KAQLVQELKEKGFK 1175

Query: 424  A----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNE 476
            A    SD     +     +           +E+       +L + L  LT    + +R +
Sbjct: 1176 AIAKVSDAAKQGEKAPVVNRDDEESSDSEDTELAANSFDYLLGMPLWSLTKERVEKLRRQ 1235

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
            +    IEI   +  LS        +   L   K +L+   R +
Sbjct: 1236 IGDKEIEIDTLIK-LSKEDIWRADLDAFLEEWKFQLEDEGRRQ 1277


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/523 (21%), Positives = 215/523 (41%), Gaps = 42/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   ++ V   KK +
Sbjct: 781  DHTTEEITYTDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTCFKLNV---KKDM 836

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG+A++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 837  KVAELSGYVLGLTAYQHGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 896

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +     + +  + DG   EP       P +L+NG  GI  G +
Sbjct: 897  PRYIYTRLSPFARRIFHEADGPLLTYNVD-DGQVIEPETYFPVVPMILINGADGIGTGWS 955

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++             +  P  P      G TG   +    R  
Sbjct: 956  TSIPNYNPEEIVANIKRLM-------------VGEPVVPMQPWFRGFTGEVVSMGGERYK 1002

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     +I +TE+P +       +++ E+++ ++I   I D +D +   
Sbjct: 1003 FSGR------FSQIGDNEIEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHT 1056

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                VI+L    +   I   L  +    ++L + N+VA +  G   +  +   IL+ F +
Sbjct: 1057 KVHFVIQLDEKHAKKAIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPEHILQEFYS 1116

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     L   A  V  + +   +I   P      +EL ++ + 
Sbjct: 1117 VRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMIIDGKLVISKKP-KAQLVQELKEKGFK 1175

Query: 424  A----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNE 476
            A    SD     +     +           +E+       +L + L  LT    + +R +
Sbjct: 1176 AIAKVSDAAKQGEKAPVVNRDDEESSDSEDTELAANSFDYLLGMPLWSLTKERVEKLRRQ 1235

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
            +    IEI   +  LS        +   L   K +L+   R +
Sbjct: 1236 IGDKEIEIDTLIK-LSKEDIWRADLDAFLEEWKFQLEDEGRRQ 1277


>gi|308447920|ref|XP_003087560.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
 gi|308254760|gb|EFO98712.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
          Length = 664

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 109/187 (58%), Positives = 147/187 (78%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H +L DL KDTV++  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNMAPH 183

Query: 194 NLGEVVD 200
           N+ EVV+
Sbjct: 184 NMTEVVN 190



 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 112/486 (23%), Positives = 193/486 (39%), Gaps = 68/486 (13%)

Query: 464 RLTGLGRDDIRNE-LNSLGIEIKECLDILSSRSRLLG----IIKQELLSVKDELDTPRRT 518
           R T +    + +E L  L  +  E  D      R+       I   L++    +     T
Sbjct: 119 RYTEVRMRKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMAT 178

Query: 519 RIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
            +    + ++ +   I  E +V+TVS  GY K  PLS Y AQRRGG+G+S   M+++D++
Sbjct: 179 NMAPHNMTEVVNAYLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYI 238

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L + S H +VL F+++G VY+ +V+ +P  S  A+G+ ++N+L L+  E IT I+P  
Sbjct: 239 QHLIVTSNHATVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLDAEETITAILPVI 298

Query: 638 E------------------------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
           +                        + +  ++ Y         +  N       + +   
Sbjct: 299 DAPKKFTERLTEFRTFVRANVAQLRENTIIDSHYEALKAAFAELGENPDDLSDALRKQLK 358

Query: 672 --GKIAMKLDSRDEILS-----VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             G      D  DE+++     VE+  +   + + T  G   R     +  F    S G+
Sbjct: 359 EIGIELSASDLDDELIAEFAERVESVRKNFYVFMATASGTVKRV---ELEQFGNVRSNGL 415

Query: 725 RGISLAKGDQVISMAIVLHAD------------------------ADYDERICYMKHMSA 760
           R I L + D +I +AI                                  R   +   +A
Sbjct: 416 RAIELKEEDTLIGVAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVALAAA 475

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           Q         +        S    +S      +  +   +L  S  G+GKRT   DF   
Sbjct: 476 QTEEDVEVDVDSDDEDTADSNTNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTK 535

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R GKG+ A   S+ N  G LV    ++++ +++L+SD GTL+R   +E+    R  +GV
Sbjct: 536 KRGGKGVIAIKTSERN--GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGV 593

Query: 881 VIFSTA 886
            +    
Sbjct: 594 RLIRLG 599



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +    + D  ERI  +        LI+G T     +  + +   N++E     L  +EQ
Sbjct: 140 TVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNMAPH-NMTEVVNAYLIPEEQ 198

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LTVS+ G+ K     D+    R G+G  AT + + + I  L+     +++  ++  ++
Sbjct: 199 VVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVT---SNHATVLCFTN 255

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRES 900
            G + R+ V E+  ASR  KG   V +     +E + ++  + ++
Sbjct: 256 VGKVYRLRVFEVPQASRGAKGRPMVNLLPLDAEETITAILPVIDA 300


>gi|126661927|ref|ZP_01732926.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
 gi|126625306|gb|EAZ95995.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
          Length = 902

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 148/627 (23%), Positives = 272/627 (43%), Gaps = 78/627 (12%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  M ++
Sbjct: 39  HFYENNENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKEL 96

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + L+I+ QGN+G++  G
Sbjct: 97  D---DGRYNKVANIVGHTMQ-YHPHGDASIGDAMVQIGQ----KDLIIDMQGNWGNILTG 148

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E R+ K  H +L        ++  +YDG   EP+ L  ++P +L  G  GI
Sbjct: 149 DSAAASRYIEARISKFGHDVL--YSPKITEWGMSYDGRRAEPINLPVKFPLLLAQGAEGI 206

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG++T +  HN  E++D  + ++      L         PDFPT  +        + Y 
Sbjct: 207 AVGLSTKVLPHNFNELIDSSIKILKGKPFTL--------FPDFPTAGI-----ADVSNYN 253

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G     +R  + I +   D++ +V+T+IP+  N + +++ I +   + +I       ++
Sbjct: 254 DGLRGGRVRVRAKIGQL--DKQTLVITQIPFSTNTSTLIDSILKANEKGKIK--IKKIED 309

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +      ++I L  G S D +++ LY +T+ ++  +     +   KP    +  +LK   
Sbjct: 310 NTAAEVEILIHLPAGVSPDKMIDALYAFTACETSVAPLGCVIENNKPLFIGVSDMLKIST 369

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
               +++ R  +  L++  ++ H      I +                   R E+     
Sbjct: 370 NRTVDLLKRELEIQLDELENKWHFSTLEKIFI-------------------REEMYIDFK 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             SD + L   + D            +++   + + ++ + R+T    D   + +  L  
Sbjct: 411 LYSDRESLYKYMYDRFEPFLKSFVREINDDDLQKLTQIPMIRITRFDSDKADDAIAKLEA 470

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+++    L     ++         +KD+    R     E   ++   D I    +V+  
Sbjct: 471 EMEQVKYHL---DHIIDYTIDFFQKLKDKYGKGR-----ERQTELRSFDNIEATKVVLRN 522

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + L YV R             +G  G  ++ +++V D    S    V+ F   G +   K
Sbjct: 523 TKL-YVNR------------EEGFFGTGLKKDEYVAD---CSDIDDVIVFLRDGKMMVAK 566

Query: 603 VWRLPIGSPQARGKALINILSLNQGER 629
           V        +  GK +I+I   ++ ++
Sbjct: 567 VDD-----KKFVGKDIIHIAVFDKNDK 588


>gi|117654317|gb|ABK55589.1| DNA gyrase subunit A [Bacillus sonorensis]
          Length = 204

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 126/204 (61%), Positives = 163/204 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRI 293
           EIPYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKI 204


>gi|46445985|ref|YP_007350.1| DNA topoisomerase IV subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399626|emb|CAF23075.1| putative DNA gyrase (topoisomerase) chain A [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 633

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 141/540 (26%), Positives = 235/540 (43%), Gaps = 55/540 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I   MQ  Y+ YA  VIL RAIP++ DGLKPV RRIL+ +  M    + K  K A ++G
Sbjct: 3   DIKQLMQRHYIKYASYVILDRAIPNVIDGLKPVQRRILYTLWLM---HDGKLHKVANVAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           + M   HPHG+A I +AL  +    + +  L++ QGNFG++  GDP AA RY E RL   
Sbjct: 60  QTMA-LHPHGDAPITEALINI----ANKGYLLDQQGNFGNLFTGDPAAAARYIETRLTPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A         D     P+YDG  QEP  L A+ P VL+ G  GIAVGM+T+I  HN  E+
Sbjct: 115 AK--ETLFNADLTSTIPSYDGRHQEPTCLPAKIPVVLLQGADGIAVGMSTHIFPHNFLEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++     +         PDFPTG ++       + Y  G+G + +R    +  
Sbjct: 173 LEAEIAILEGKPFSI--------LPDFPTGGIM-----DASDYNKGKGKVRLRAKIEV-- 217

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +V+TEI Y     +++  I E  ++ +I    D  ++   +   + I+L RG 
Sbjct: 218 --RDAKSLVITEICYGTTTESLIRSIDEAAKKGKIKI--DAINDYTAEKVEIEIKLPRGQ 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +L  LY YT  Q      +V +    P    +  IL+      +E + R  +    
Sbjct: 274 YAQDLLEALYAYTECQVTLHSQIVVIKDNYPWETDVDSILRLHTEKLQEYLQRELE---- 329

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
              +R H+            E + I             L +R  + +  +++   I  S 
Sbjct: 330 --LERDHLNE---KIFEKTLEQIFI----------ENRLYKRIEDLTSYEEVHVTIAASL 374

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               S      +E     +L + + R+T       + E   +    ++   +      ++
Sbjct: 375 IPFHSQLLRIPTEQDRERLLSIPIRRITRFDLAKNQEE---ILSHQEQLTRVEKDLKNII 431

Query: 499 GIIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +  + L S+  +  +   R+T I + +  ++      R+  V      G++     S Y
Sbjct: 432 KVAIRYLNSLIKKFASEHKRKTEI-QVIQQVDTRAMETRQITVCFDPTTGFIGTKVTSNY 490


>gi|86143381|ref|ZP_01061783.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
 gi|85830286|gb|EAQ48746.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
          Length = 875

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 150/610 (24%), Positives = 258/610 (42%), Gaps = 79/610 (12%)

Query: 1   MTEHIISSD----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M+E+    +    E+E  G T   +T   ++ +L YA  VIL RA+P + DG KPV RRI
Sbjct: 1   MSENYEDPNLDQPEDENSGETITRVTGMFKDWFLDYASYVILERAVPAIEDGFKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           +  M  +    + +Y K A I G  M  YHPHG+A+I DA+ +M Q    + LLI+ QGN
Sbjct: 61  MHSMKDLD---DGRYNKVANIVGHTMQ-YHPHGDASIADAMVQMGQ----KDLLIDTQGN 112

Query: 117 F-GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +  ++ GD  AA RY E RL K A  L         D++ +YDG  +EP+ L  ++P +L
Sbjct: 113 WGNTLTGDSAAASRYIEARLSKFA--LEVLFSPKITDWQASYDGRRKEPINLPVKFPLLL 170

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T +  HN  E++D  V  ++     +         PDFP+        
Sbjct: 171 AQGAEGIAVGLSTKVLPHNFVELIDASVKHLEGKKFKI--------LPDFPSAG-----E 217

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G+    IR  + I +   D+  +V+TEIP+     ++++ I +   + ++  
Sbjct: 218 ADFSDYKDGKRGGRIRVRAKISQL--DKNTLVITEIPFTTTTTSLIDNILKANDKGKLKI 275

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
                +++      +++ L  G S D  +  LY +T+ +   S     +   KP    + 
Sbjct: 276 K--RIEDNTSSQVEILVHLPAGLSPDKTIGALYAFTNCEVSISPLGCVIEDNKPLFVGVS 333

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+        +   RTK LL +  +     +      A+L+ +    R   + E    
Sbjct: 334 EMLR--------ISTDRTKDLLRQELEIQLEELENQWHYASLERIFIENRIYRDIEE--- 382

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
              + +W+         L     +         L       + E+R+ R++    D  + 
Sbjct: 383 ---ETTWDGVLHAINEGLKPHIGHLKRPVVEEDLVR-----LTEIRIKRISKFDIDKAQQ 434

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCI 533
            + +L  +I E    L     L          +K E      R+T I       +  D I
Sbjct: 435 RIEALEDQIAEVKHHL---EHLTDYAIAYFKRLKKEFGAGRERKTEI-------KLFDDI 484

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
               +V+  + L YV R             +G  G  ++ +++VTD   +     ++ F+
Sbjct: 485 EASKVVIRNTKL-YVNR------------KEGFVGTSLKKDEYVTDCADI---DDIIVFT 528

Query: 594 SLGFVYKEKV 603
             G +   KV
Sbjct: 529 KEGVMMVTKV 538


>gi|308198935|dbj|BAJ22602.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198951|dbj|BAJ22610.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198955|dbj|BAJ22612.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLD 214
           + D  L+
Sbjct: 182 SKDASLE 188


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 105/519 (20%), Positives = 210/519 (40%), Gaps = 39/519 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V   KK V
Sbjct: 785  DHTTDEITYTDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTCFKRNV---KKDV 840

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 841  KVAELSGYVLGMTAYQHGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 900

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +  +  + +  + DG   EP +     P +L+NG  GI  G +
Sbjct: 901  PRYIYTRLSPFARRIFHEADEPLLTYNVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWS 959

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++                P  P      G TG   +    R  
Sbjct: 960  TSIPNYNPEEIVANLKRLMAGE-------------PLVPMEPWFRGFTGEVVSMGGERYK 1006

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     ++ +TE+P +       +++ E+++ +++   I D +D +   
Sbjct: 1007 FSGR------ISQIGDNEVEITELPIRSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHT 1060

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+L    +   I   L  ++   +++ + N+VA +  G   +  ++  IL+ F +
Sbjct: 1061 KVHFIIQLDEKYAKKAIAEGLEEKFKLTKTIATSNLVAFDSEGRITKYESVEEILREFFS 1120

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     +   A  V  + +   +I   P  +  R    +    
Sbjct: 1121 VRLKLYEKRKQHQLSQMQKDLEKMTNQARFVQMIIDGKFVISKKPKAQLVRELKEKGFKP 1180

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGRDDIRNELNS 479
             + + D     +++      +                +L + L  LT    + +R ++  
Sbjct: 1181 FAKVSDAAAKGENAPVVEEDEDDDGEDTEIAANSYDYLLGMPLWSLTKERVEKLRRQIGD 1240

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRR 517
               EI   +  LS        +   L   K +L+   RR
Sbjct: 1241 KETEIDTLIK-LSKEDIWTADLDDFLAEWKFQLEDEERR 1278


>gi|308198931|dbj|BAJ22600.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDLD 214
           + D  L+
Sbjct: 181 SKDASLE 187


>gi|308198941|dbj|BAJ22605.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198943|dbj|BAJ22606.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198945|dbj|BAJ22607.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198947|dbj|BAJ22608.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198949|dbj|BAJ22609.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198959|dbj|BAJ22614.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198961|dbj|BAJ22615.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  234 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 113/187 (60%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDLD 214
           N D  L+
Sbjct: 181 NKDASLE 187


>gi|302340476|ref|YP_003805682.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
 gi|301637661|gb|ADK83088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
          Length = 643

 Score =  234 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 167/711 (23%), Positives = 293/711 (41%), Gaps = 98/711 (13%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +      ++L YA  VI  RAIPD+ DGLKPV RRIL  + ++    + K+ K A I G 
Sbjct: 4   VKTLFNRNFLEYASYVIKDRAIPDIGDGLKPVQRRILHSLFEVD---DGKFHKVANIVGH 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+IY AL  +    + + L I+ QGNFG+ + GD  +A RY ECR+   A
Sbjct: 61  CM-KYHPHGDASIYSALVVL----ANKDLFIDKQGNFGNPITGDEASAARYIECRILPFA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L        ++  +YDG  +EPVV  ++ P +L+ G  GIAVGM+T I  HN  EV+
Sbjct: 116 KKVL--YSPQVTEYVDSYDGRNREPVVFPSKIPVLLIQGAEGIAVGMSTKILPHNFEEVL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              V+ +      L         PDFP G ++       + Y  G G ++IR        
Sbjct: 174 RAVVSELKGEPFQL--------FPDFPNGGLV-----DVSDYQDGLGKVLIRAK----LD 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           + D ++I++ EIP+     +++  I    R+ R+  I+ + D    +   + I+L RG  
Sbjct: 217 TKDPKRIIIKEIPFGTTTESLIASIEAAARKGRVK-ISQINDY-TSEAVEIEIKLARGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
              +++ L+ YT  +   SVN++ +    P + T+  +++        V+    K     
Sbjct: 275 TKEVVDSLFAYTDCEYSVSVNLLVIKDGLPTQMTVPEVIRYHARQLVAVLEAELKVEEAD 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
            +++ H      I +                      + +R       + +I  + +   
Sbjct: 335 LKEKIHARTLERIFI-------------------EERIYKRIEEMKTRETVISAVIEGFK 375

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR-SRLL 498
               +    ++E     +L++ + R++    +  R EL  L   +KE    L +  +  +
Sbjct: 376 PFKKEIPREVTEEDVERLLKIPIRRISLYDIEKARKELAELQGRLKEVRYHLKNLVAYAI 435

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G I+  L         PRRT+ V     ++  +   R+  +   +  GY+          
Sbjct: 436 GFIEGVLKDTAGRF--PRRTK-VGRFEKVDVREVAARDLDLRYDAKTGYL---------- 482

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                    G  ++  D    LF V+ +  VL     G     +V  +P      +G   
Sbjct: 483 ---------GYDLKGGD---SLFAVNQYDRVLIIRGDG---TYRVTDVPEKMFVGKG--- 524

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +    +   E +         +  ++ +Y    TKH  ++R  +  FI      K    L
Sbjct: 525 LMYCGIADKEELA--------DCHFSIVYQDTVTKHLYIKRCTIEQFIL----EKDYDLL 572

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR----VFAGRNSVGVR 725
               + L   T  ++ +I+L  K    ++      R    +     + GVR
Sbjct: 573 PEGAKPL-AFTTREDQEIVLNYKPKPRLKILEENFRVSDFLVKSVKAGGVR 622


>gi|121822754|gb|ABM65606.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 114/188 (60%), Positives = 149/188 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+ D + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ +L K+TV
Sbjct: 61  AVDDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAELEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEI 219
            ++ LME 
Sbjct: 181 SIEGLMEH 188


>gi|218677864|ref|ZP_03525761.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 241

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 147/225 (65%), Positives = 177/225 (78%), Gaps = 1/225 (0%)

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD
Sbjct: 1   AMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++ISM IV H DA+  ER  Y+K  +A+RR    D E+I  +  + + EG +S+ER + L
Sbjct: 61  RIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEVL 120

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI
Sbjct: 121 RNREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQI 180

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +LVSD G LIRVPV  IRIASRATKGV IFST KDE+VVSVERI 
Sbjct: 181 MLVSDGGQLIRVPVGGIRIASRATKGVTIFSTHKDEKVVSVERIS 225



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 19/230 (8%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577
           ++ E   ++   +     D V+  + LG   R  +   R    R   G  G+ + + D +
Sbjct: 3   KLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRI 62

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             +       +++         +    +      +A G    +I  +  GE +T      
Sbjct: 63  ISM-------TIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALV--GEEVTEEGQLS 113

Query: 638 EDESSW---NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVET 689
           ++          +V+  ++ G  +R+   DF    R GK     D        E+++   
Sbjct: 114 DERYEVLRNREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFP 173

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
               + I+L +  GQ +R P+  IR+ A R + GV   S  K ++V+S+ 
Sbjct: 174 VDDGDQIMLVSDGGQLIRVPVGGIRI-ASRATKGVTIFSTHKDEKVVSVE 222


>gi|146300230|ref|YP_001194821.1| DNA topoisomerase IV subunit A [Flavobacterium johnsoniae UW101]
 gi|146154648|gb|ABQ05502.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacterium johnsoniae
           UW101]
          Length = 906

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 149/693 (21%), Positives = 286/693 (41%), Gaps = 84/693 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   + EEE + +    +T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 44  GQHFYENQEEEGEDVI-TKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         ++  +YDG   EP+ L  ++P +L  G  
Sbjct: 155 TGDGAAAPRYIEARLSKFA--LEVLYSPKITEWGLSYDGRKAEPINLPVKFPMLLAQGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++T +  HN  E++D  + ++      L         PDF T  +        + 
Sbjct: 213 GIAVGLSTKVLPHNFNELIDASIKILKGKPFTL--------YPDFMTQGI-----ADVSN 259

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     +R  + I +   D+  +V+T+IP+  N +++++ I +     +        
Sbjct: 260 YNDGMRGGRVRVRAKISQL--DKNTLVITQIPFSTNTSSLIDSILK--ANDKGKIKIKKI 315

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           +++      ++I L  G S D  ++ L+ +T+ ++  +     +   KP    +  +LK 
Sbjct: 316 EDNTAADVEILIHLFPGVSPDKTIDALFAFTACETSVAPLGCVIEDNKPLFIGVSQMLKI 375

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                 +++ +  +  L + +++ H      I +                   R E+   
Sbjct: 376 STHRTVDLLRQELEIQLEELKNKWHFSTLEKIFI-------------------REEMYID 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                D + L   + D            +++   + + ++ + R+T    D   + +  L
Sbjct: 417 FKLYGDRESLYKYLYDRFEPFKKSFVREINDDDLQRLTQIPMIRITRFDSDKADDLIAKL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             E+KE    L     L          +K++    R     E   ++   D +    +V+
Sbjct: 477 EDEMKEVEHNL---EHLTDFAIAYFTKLKEKYGKGR-----ERQTELRVFDNVEATKVVL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             + L YV R             +G  G  ++ +++V D    S    V+ F   G    
Sbjct: 529 RNTKL-YVNR------------EEGFVGTSLKKDEYVGD---CSDIDDVIVFLRDG---- 568

Query: 601 EKVWRLPIGSPQAR---GKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGN 656
                L I    A+   GK +I++   ++ ++ T   M + + +S  + +     T    
Sbjct: 569 ----TLMITKVDAKTFIGKDIIHVAVFDKNDKRTIYNMMYRDGKSGPSYIKRFNVTGVTR 624

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +   L++    ++    +   +   E++++  
Sbjct: 625 DKAYDLTNGTNGSQVVYFSHNPNGEAEVVTILL 657


>gi|308072531|dbj|BAJ21888.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 186

 Score =  234 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 112/186 (60%), Positives = 141/186 (75%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPH
Sbjct: 1   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ K
Sbjct: 61  GDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN
Sbjct: 121 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 180

Query: 209 PDIDLD 214
            D  L+
Sbjct: 181 KDASLE 186


>gi|308198957|dbj|BAJ22613.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 112/187 (59%), Positives = 142/187 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDLD 214
           + D  L+
Sbjct: 181 SKDTSLE 187


>gi|86130200|ref|ZP_01048800.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
 gi|85818875|gb|EAQ40034.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
          Length = 893

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 144/603 (23%), Positives = 258/603 (42%), Gaps = 75/603 (12%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            ++SS   E  G T   ++   ++ +L YA  VIL RA+P + DG KPV RRI   M  +
Sbjct: 17  DMLSSQTGEGSGETITRVSGMFEDWFLDYASYVILERAVPAIEDGFKPVQRRI---MHAL 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  G
Sbjct: 74  KELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGNILTG 128

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E RL K A  L         D++ +YDG  +EP+ L   +P +L  G  GI
Sbjct: 129 DRAAASRYIEARLSKFA--LDVVYNPKITDWQASYDGRKKEPINLPVMFPLLLAQGAEGI 186

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG++T +  HN  E++D  +  +      +         PDFPT   I   T  K+   
Sbjct: 187 AVGLSTKVMPHNFIELIDASIKHLKGKRFTI--------YPDFPTAG-IADFTDYKDGLR 237

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G+     R       +  D+  +V+TE+P+     ++++ I +     +        ++
Sbjct: 238 GGKIRCRAR------MSQQDKNTLVITELPFGQTTTSLIDSILK--ANDKGKIKIKKIED 289

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +      +++ L  G S D  ++ LY +T+ ++  S     +   KP    +  +L+   
Sbjct: 290 NTSANVEILVHLPSGISPDKTIDALYAFTNCETSISPLGCVIEDNKPLFVGVSEMLRRST 349

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              + ++    +  L +  ++ H         A+L+ +    R   + E       Q +W
Sbjct: 350 DRTKALLKSELEIQLGEFENQWH--------YASLERIFIENRIYRDIEE------QETW 395

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +I+ ID             ++      + E+R+ R++    D  + ++++L  
Sbjct: 396 DG-----VIEAIDKGLKPHIGHLKRAVTVEDITRLTEIRIKRISKFDIDKAQQKIDALED 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           +I +    L +   L          +K +      R+T I          D I    +V+
Sbjct: 451 QIAQVKHHLDN---LTQYAIDYFTRLKKDYGKGKERKTEI-------RVFDDIQAAKVVL 500

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             + L YV R             +G  G  ++ +++VTD    S    ++ F+  G +  
Sbjct: 501 RNTKL-YVNR------------AEGFVGTSLKRDEYVTD---CSDIDDIIVFTKSGSMMV 544

Query: 601 EKV 603
            KV
Sbjct: 545 VKV 547


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 112/580 (19%), Positives = 215/580 (37%), Gaps = 51/580 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +     +S TD +    + +++     R+IP + DGLKP  R++LFG  +  + 
Sbjct: 767  EPGTYLDHSTEKISYTDFVNRELILFSM-ADNIRSIPSMVDGLKPGQRKVLFGCFKQNLI 825

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
             ++K V+ A    +    +H  G  ++   +  +AQ++  S  +  +E  GNFGS    G
Sbjct: 826  HDQKVVELAGYVSKEAAYHH--GEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLSGG 883

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   RL   A  +   L +  ++F+ + DG   EP V     P VLVNG  GI
Sbjct: 884  SDAASARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPIIPMVLVNGADGI 942

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T+IP ++  ++V+     +                P  P      G  G      
Sbjct: 943  GTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGE-----EKPFEPMTPWFRGWKGTPEP-- 995

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRD 301
             G       G+  +E    +  ++ VTE+P ++       K+ E++R  +    I D ++
Sbjct: 996  DGPNRFKFNGI--VEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKSPSWIKDYKE 1053

Query: 302  ESDRQGYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGIL 358
             +D Q    +I L+    +  + + L  ++   +++ + N+VA +  G   +      I+
Sbjct: 1054 YNDHQTVHFIIALEEKHMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIHKYENPQEIM 1113

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRE 416
            + +  +R  +   R K+ L            L      + E++   ++          +E
Sbjct: 1114 EEYYHYRLNLYGERKKHWLKVYHAD---YRKLQNQYRFISEIIENKLVVSKKKKSVLVQE 1170

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE-----VQTRAILELRLARLTGLGRD 471
            L +R + A   K     +      +G+       +          +L + +  LT    D
Sbjct: 1171 LRERKYEAFPPKSDGRNVKSPDEELGAADNEDEEDAVGGARDYDYLLSMPIWSLTFERLD 1230

Query: 472  DIRN-------ELNS-------------LGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
             ++        E +              L     E  + L     +   I+Q+   V  +
Sbjct: 1231 KLKQQIAAKKAEHDELDALSEKDLWCRDLDAFTAEWEEQLRLEDEVRKEIRQKGRRVSYK 1290

Query: 512  LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                 R +   G  D ED D   ++           +K  
Sbjct: 1291 GGAVSRLKKSRGAKDDEDFDPGAKKAKAKAAPKAETIKTQ 1330


>gi|238913907|ref|ZP_04657744.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 338

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 99/322 (30%), Positives = 166/322 (51%), Gaps = 16/322 (4%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 1   MTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 60

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++
Sbjct: 61  WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKK 117

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R
Sbjct: 118 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-R 176

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADA-----DYDERICYMKHMSAQRRLISGDTEEITS 774
            + GVRGI LA  D+V+S+ I     A                    +   +     I  
Sbjct: 177 TATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKV 236

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + + SV G +  + C +       I+ +++ G   RT   +  +  R+ +G+     ++
Sbjct: 237 TERNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAE 289

Query: 835 INEIGALVAVFPVNDNDQIILV 856
              +  L  V    D++++  +
Sbjct: 290 DENVVGLQRVAEPVDDEELDAI 311



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 6/105 (5%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  A  + + + I  L+     N +D I+  S +G
Sbjct: 1   MTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRG 57

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            L  + V ++  ASR  +G   V +     +ER+ ++  +RE E 
Sbjct: 58  RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 102


>gi|28372382|gb|AAO38030.1| GyrA [Campylobacter jejuni]
          Length = 181

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 109/178 (61%), Positives = 137/178 (76%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGL 180


>gi|308198933|dbj|BAJ22601.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 190

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 141/187 (75%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ K
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 209 PDIDLDA 215
            D  L+ 
Sbjct: 183 KDASLEE 189


>gi|311746903|ref|ZP_07720688.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
 gi|126578592|gb|EAZ82756.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
          Length = 872

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 153/706 (21%), Positives = 287/706 (40%), Gaps = 101/706 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E        ++    +V ++   ++ +L YA  VIL RA+P + DGLKPV RRI+  M
Sbjct: 1   MSEENDLPKNGDDNLHDTVPVSGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + ++ K A I G+ M  YHPHG+A+I DA+  + Q    + LLIE QGN+G +
Sbjct: 61  KEMD---DGRFNKVANIIGQSMQ-YHPHGDASIGDAIVNLGQ----KDLLIETQGNWGDI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  L       T +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 RTGDRAAAARYIEARLSKFA--LEVVFNPQTTEWQLSYDGRKREPITLPVKFPLLLAQGV 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++G + ++     ++         PDF TG +        +
Sbjct: 171 EGIAVGLSTKILPHNFCELIEGSIEILKGNKTNV--------LPDFLTGGL-----ADFS 217

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G+    ++  + IE+   D + I++ EIP+     ++++ I +     +       
Sbjct: 218 EYNGGQRGGKVKVRAKIEEE--DSKTILIKEIPFGTTTDSLIDSILK--ANDKGKIKIKK 273

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             ++  +   + + L  G S DV ++ LY +T  +   S N   +   KP    +  IL 
Sbjct: 274 VVDNTAKDVEIAVHLAPGISPDVTIDALYAFTDCEVSISPNACVIIDEKPVFLDVNDILT 333

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                      ++T+ LL K  +     +   +  ++L+++    R   + E        
Sbjct: 334 YN--------TKQTRALLKKELEIRKAELMEKLLFSSLEKIFIENRIYRDIEE------- 378

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                +  +++++ ID        D    + E     + E+R+ R++          +  
Sbjct: 379 ----CTTWQEVLEAIDKGLDPYKPDFYREIVEEDLVKLTEIRIKRISKFDSFKADELMKR 434

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRED 537
           L     E  ++  +   L     +   S+  +      R+T I             ++  
Sbjct: 435 LQ---DELKEVNYNLRHLTDYAIKYYESLLTKYGKGKERKTEIRA--------FDTIQAS 483

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V   +   YV R              G  G  ++ ++FV D    S    ++     G 
Sbjct: 484 VVAANNAKLYVNRKD------------GFVGTSLKKDEFVCD---CSDLDDIIVIRKDGI 528

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
                V ++   +    GK +++            +    ++   +N +Y+   T    V
Sbjct: 529 C---MVSKIQEKNF--MGKDILH----------VAVFRKGDERMVYNLIYLDGGTGRAMV 573

Query: 658 RRNKL-----SDFIQINRSGKIAMKL------DSRDEILSVETCTQ 692
           +R ++          + +  K +  L      +   EI++V     
Sbjct: 574 KRFQVLAVTRDKEYNLTKGSKGSKTLYLTANSNGEAEIVTVYLTQG 619


>gi|313887294|ref|ZP_07820985.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923213|gb|EFR34031.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176347|gb|AEE12037.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 875

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 136/524 (25%), Positives = 229/524 (43%), Gaps = 54/524 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E  ++ +E+E +G    ++    ++ +L YA  VIL RA+P + DGLKPV RR+L+ M 
Sbjct: 33  DEGYVAPEEDEGEGHLH-TLGGMYRHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMH 91

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            M    N    K A+I G  M  YHPHG+A+I DAL ++ Q    +  LI+ QGN+G++ 
Sbjct: 92  LME---NGTLHKVAKIVGATMA-YHPHGDASINDALVQLGQ----KGYLIDTQGNWGNIL 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E +L   A  +L   G     +  +YDG  +EPV L AR+P +L  G  
Sbjct: 144 TGDEAAAGRYIEAKLSNFALEIL--FGDKITPWMKSYDGKSREPVYLPARFPLLLAQGAE 201

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++  I  HN  E+++   A +      L         PDFPTG +I       + 
Sbjct: 202 GIAVGLSCKILPHNPKELIEAACAYLRGEPFTL--------YPDFPTGGII-----DVDR 248

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIAD 298
           Y  G+    ++  + IE+   +   + V ++P+    + +++ I +   +   +I  I D
Sbjct: 249 YNDGKRGGQVKSRARIERI--EDRVLSVRDLPFGKTTSTLIDSILKANDKGLIKIKRIDD 306

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +  E+      + I L  G SAD  ++ LY +T  +   S N   +   KP    +  +L
Sbjct: 307 MTAETAD----IRIYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKPRFLGVSDLL 362

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +  V    E++    +  L+  ++         + + +    +R    +P+ +TA   + 
Sbjct: 363 RHSVKHTRELLQEDLRLQLHDRQEEYMGASLERLFIEHRIYKLRPFEEAPDQQTALDVIR 422

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +          L  + DD            L E++   IL+  L +        +  E+ 
Sbjct: 423 KALEPIVGDSLLRPITDDDLA--------RLLEIKMARILKFNLEK-NEQLILRLTEEMA 473

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRI 520
                      I      +         S+ +E      RRT+I
Sbjct: 474 Q----------IQHHLDHITDYTIHYYSSLLEEYGAGWERRTQI 507


>gi|215480313|gb|ACJ67501.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 260

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 126/283 (44%), Positives = 180/283 (63%), Gaps = 26/283 (9%)

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 2   GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 61

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++ 
Sbjct: 62  DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLD 121

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++   
Sbjct: 122 HQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--- 178

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q +AIL++RL RLTGL R+ I  E  SL   
Sbjct: 179 -----------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL 215

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           I E  DIL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 216 IAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLE 258


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 112/523 (21%), Positives = 211/523 (40%), Gaps = 46/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 777  DHSVEKITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 835

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 836  ELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASA 893

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 894  RYIYTRLSPFARRMFHAADDPLLTYNED-DGKKIEPEVYVPVVPLILINGADGIGTGWSS 952

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D+              P  P      G TG   A    R   
Sbjct: 953  SIPNYNPEDIVDNLKRLMDSQ-------------PVKPMQPWFRGFTGEVTALGGDRFKF 999

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ E+++ ++    I D +D +    
Sbjct: 1000 -----SGIIKETGDKE-VEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTK 1053

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  ++  ILK F A 
Sbjct: 1054 VHFVIQMDEKNIKSAVAEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVDDILKEFYAV 1113

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y L++ +     L   A  V  + +   +I     P              
Sbjct: 1114 RLKFYERRKQYQLSELQKELDKLTNQARFVQMIIDGDLVISKKKKPVLVAELKKHGFKAF 1173

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + D +   +D+      +      E +        +L + L  LT    + +R ++  
Sbjct: 1174 PKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGE 1233

Query: 480  LGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
              +E+         DI      L   I +    ++DE    RR
Sbjct: 1234 KEVEMDALIKLSKEDIWKRD--LDDFINEWRFQLEDE---ARR 1271


>gi|213419120|ref|ZP_03352186.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 219

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 99/202 (49%), Positives = 140/202 (69%), Gaps = 1/202 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 18  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 77

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 78  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 138 SKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALM 217
            EV    + +I+ P   LD L+
Sbjct: 198 REVAKAAITLIEQPKTTLDQLL 219


>gi|149370480|ref|ZP_01890169.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
 gi|149356031|gb|EDM44588.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
          Length = 896

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 161/686 (23%), Positives = 283/686 (41%), Gaps = 85/686 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E+  T   +T   +  +L YA  VIL RA+P + DG KPV RRI+  M  +    + 
Sbjct: 28  DHVEETETITRVTGMYREWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKDLD---DG 84

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           +Y K A I G  M  YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA 
Sbjct: 85  RYNKVANIVGHTMQ-YHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAAS 139

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E R+ K    L          ++ +YDG  +EP+ L   +P +L  G  GIAVG++T
Sbjct: 140 RYIEARISKFG--LDVVYNPKITKWQASYDGRRKEPINLPVMFPLLLAQGAEGIAVGLST 197

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +  HN  E++D  V  +      L         PDFPTG ++         Y  G    
Sbjct: 198 KVLPHNFLELIDASVKYLQGKRFTL--------FPDFPTGGMV-----DVTDYNDGLRGG 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            I+  + I     D+  +V+ EIP+  N  ++++ I +     +        +++     
Sbjct: 245 KIKSRARI--LQHDKNTLVIREIPFGTNTGSLIDSILK--ANDKGKIKIKKIEDNTAADV 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            ++I +  G S D  ++ LY +T+ ++  S     +   KP    +  +LK        +
Sbjct: 301 EILIHIAAGLSPDKTIDALYAFTNCETSISPLACVIEDNKPLFVGVSEMLKRSTDRTVFL 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +    +  LN+  ++ H      I + N     RI R     ET               +
Sbjct: 361 LKSELEIQLNEFEEQWHYASLERIFIEN-----RIYRDIEEEETW--------------E 401

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            +I  ID       S     ++E     + E+R+ R++    D  + ++++L   I E  
Sbjct: 402 GVITAIDKGLKPHTSHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALEDSIAEVK 461

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             L +   L+         ++ +      R++ I       +  D I+   +V+  + L 
Sbjct: 462 HHLEN---LITYAINYFTRLRKDYGEGKERKSEI-------KVFDDIIASKVVIRNTKL- 510

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YV R             +G  G  ++ +++VTD    S    ++ F+  G +   KV   
Sbjct: 511 YVNR------------EEGFIGTSLKRDEYVTD---CSDIDDIIAFTKDGKMMVTKV--- 552

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S    GK +I++    + ++ T      +D          FA     V R++  D  
Sbjct: 553 --DSKTFIGKDIIHVAVFKKKDKRTIYNMIYKDGPKGATYIKRFAVTS--VTRDREYDMT 608

Query: 667 QINRSGKIA---MKLDSRDEILSVET 689
              +  K+       +   E+++V  
Sbjct: 609 AGTKGSKVYYFTANPNGEAELVTVLL 634


>gi|76800082|ref|ZP_00781975.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|76584618|gb|EAO61431.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
          Length = 245

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 3/247 (1%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL+   R++ IIK+
Sbjct: 1   MSRFELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKE 60

Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           E+  VK +    RRT + +  +L +EDED I  ED+++T+S+ GY+KR+    +RAQ+RG
Sbjct: 61  EMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRG 120

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P     A+G  ++N+L
Sbjct: 121 GRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLL 180

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L++GE I TI+     +    N Y  F T+ G V+R  +S+F  I ++G  A+ L   D
Sbjct: 181 KLDEGETIQTIINAR--KEDVANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKEND 238

Query: 683 EILSVET 689
           E+++V  
Sbjct: 239 ELINVLL 245



 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 84/199 (42%), Gaps = 13/199 (6%)

Query: 715 VFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISG 767
             + R S  +  + L      + D++ S    ++       D      + ++  +  +  
Sbjct: 5   ELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDE 64

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
              +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+GI
Sbjct: 65  VKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGI 124

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
           + T V+  + +  LV+    + +D ++  ++ G + R+   EI    R  KG   V +  
Sbjct: 125 QGTGVNNDDFVRELVST---STHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK 181

Query: 885 TAKDERVVSVERIRESEIV 903
             + E + ++   R+ ++ 
Sbjct: 182 LDEGETIQTIINARKEDVA 200



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--KLKEQFILTVSEKGFGKRT 812
           + +    +RL   +              G  +++  +EL        +L  +  G   R 
Sbjct: 100 LSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRL 159

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIRVPVN 868
            +Y+     R+ KG+   ++ K++E   +  +      D         + +G + R  V+
Sbjct: 160 KAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKRTSVS 219

Query: 869 EIRIASRATKGVVIFSTAKDERVVSV 894
           E     +   G+   +  +++ +++V
Sbjct: 220 EFSNIRQN--GLRAINLKENDELINV 243



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 7/150 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   G++G  +   D V  +      D         R
Sbjct: 97  LITLSNKGYIKRLAQDEFRA-QKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGR 155

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++  +  ++    +++G  KR
Sbjct: 156 VYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKR 215

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           TS  +F    ++G  +RA ++ + +E+  +
Sbjct: 216 TSVSEFSNIRQNG--LRAINLKENDELINV 243


>gi|213864879|ref|ZP_03386998.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 178

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 104/173 (60%), Positives = 138/173 (79%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGM
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178


>gi|150024744|ref|YP_001295570.1| DNA topoisomerase IV subunit A [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771285|emb|CAL42754.1| Topoisomerase IV subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 906

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 150/629 (23%), Positives = 275/629 (43%), Gaps = 78/629 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 45  GQHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         D+  +YDG   EP  L  ++P +L +G  
Sbjct: 155 TGDSAAASRYIEARLSKFA--LEVLYSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++T +  HN  E++D  + ++      +         PDF T  +        + 
Sbjct: 213 GIAVGLSTKVLPHNFNELIDASIKILKGKPFTI--------YPDFQTAGI-----ADVSN 259

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     +R  + I +   D++ +V+T+IP+  N + +++ I +   + +I       
Sbjct: 260 YNDGLRGGRVRVRAKISQL--DKQTLVITQIPFSTNTSTLIDSILKANEKGKIK--IKKI 315

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           +++      ++I L  G S D  ++ LY +T+ ++  +     +   KP    +  +LK 
Sbjct: 316 EDNTAAEVEILIHLFPGVSPDKSIDALYAFTACETSVAPLGCVIEDNKPLFIGVSAMLKI 375

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                 +++    +  L++  ++ H L    I + N     +I R   +  T        
Sbjct: 376 STHRTVQLLKSELEIQLSELEEQWHFLSLERIFIEN-----KIYRDIEDKTT-------- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                  +++I  +DD            ++E     +L++R+ R++    +  ++++ SL
Sbjct: 423 ------RENVIKAVDDGLKPHIKHLKRAVTEEDILRLLDIRIMRISKFDSNKAQDKIESL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I++    L +   L+         +K++    R     E   ++   D I    +V+
Sbjct: 477 EGDIEQVKHDLEN---LIDFAIAYFTRLKEKYGKGR-----ERQTELRSFDTIEATKVVL 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             + L   K              +G  G  ++ +++V D    S    V+ F   G +  
Sbjct: 529 RNTKLYVNK-------------EEGFFGTGLKKDEYVAD---CSDIDDVIVFLRDGRLMI 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGER 629
            KV        +  GK +I+I   ++ ++
Sbjct: 573 SKVDD-----KKFVGKDIIHIAVFDKNDK 596


>gi|255519785|ref|ZP_05387022.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 288

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 59/313 (18%)

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  ++   E     ++ 
Sbjct: 1   DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDS 57

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+      ++++ TK GQ +
Sbjct: 58  YLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSI 117

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            FP   IRV   R + GVRGI L + D+VI M ++   +                     
Sbjct: 118 YFPEENIRVMG-RTAAGVRGIRLREDDEVIGMEVLEDDEK-------------------- 156

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            +L V+EKG+GK+T +  + + NR G G
Sbjct: 157 ---------------------------------VLVVTEKGYGKQTPASQYPLRNRGGMG 183

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           ++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  GV +    
Sbjct: 184 VKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLD 241

Query: 887 KDERVVSVERIRE 899
           +DE+V +V ++ +
Sbjct: 242 EDEKVATVAKVPK 254



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 105/262 (40%), Gaps = 15/262 (5%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E +  + +      +  +   +  G VKR  LS +   R+   G   V +R+ D + 
Sbjct: 39  ESQEQVNAVINLSEFTDDSYLFFTTKHGVVKRTTLSQFAKIRQS--GLRAVELRENDELI 96

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            + +     +++  +  G         + +    A G   +  + L + + +  +    +
Sbjct: 97  SVQMTDGSKNMIIATKHGQSIYFPEENIRVMGRTAAG---VRGIRLREDDEVIGMEVLED 153

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQEND 695
           DE       V+  T+ G  ++   S +   NR G   K     +    +++++T T E D
Sbjct: 154 DEK------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 207

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L T  G  +RF I       GR+++GV+ I L + ++V ++A V   + + +      
Sbjct: 208 LMLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEID 266

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
           + +  Q    S +    + ++ 
Sbjct: 267 ETLITQVPDESFEDAPGSDIEE 288



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDEA 906
           D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D++
Sbjct: 1   DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDDS 57


>gi|313205728|ref|YP_004044905.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312445044|gb|ADQ81399.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|315022876|gb|EFT35900.1| DNA topoisomerase IV subunit A [Riemerella anatipestifer RA-YM]
 gi|325336831|gb|ADZ13105.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 857

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 135/535 (25%), Positives = 232/535 (43%), Gaps = 52/535 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+ +KG T   ++   ++ +L YA  VIL RAIP + DG KPV RRI+  M ++    +
Sbjct: 2   EEQYQKGETLKKVSRLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMKELE---D 58

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
            +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G+V  GD  AA
Sbjct: 59  GRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNVYTGDSAAA 113

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY E RL   A  L       T  +  +YDG   EP+ L  ++P +L  G  GI VG++
Sbjct: 114 ARYIEARLTPFA--LEVVFNPKTTHWVKSYDGRNNEPIDLPVKFPLLLAQGVEGIGVGLS 171

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T +  HN  E+++  +A +      L         PDF TG       G+ +      G 
Sbjct: 172 TKVMPHNFNELIEASIAYLKGKKFQL--------YPDFMTG-------GMLDVSNYNDGE 216

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
              R  +       D+  + +TE+P+    + +++ I +   + +I       +++    
Sbjct: 217 RGGRLRARARIIQKDKHTLCITELPFSKTTSDLIDSIIKANEKGKIK--IKKIEDNTSDQ 274

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             + I L    S D +++ LY +T  +   S N   + G KP   ++  ILK        
Sbjct: 275 VEINIHLNNDVSPDKMIDALYAFTDCEISISPNACVIVGDKPMFLSVSEILKRNTDHTVS 334

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ R  +  L +  D+ H      I +   +E+ + I+   + E     +          
Sbjct: 335 LLKRELEIELGELEDKWHFASLERIFIE--NEIYQEIKGKDSKEAVYEAIN--------- 383

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             L   I +    + ++  + L+E        L   R++   RD     + +L  +++E 
Sbjct: 384 LALQPFIKNLMREVVTEDIIRLTE--------LPFMRISRYDRDKALENIAALEGKMEEV 435

Query: 488 LDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVREDMVV 540
              L+    L+       L++K +      RRT +         +  +  E   V
Sbjct: 436 KHHLAH---LVEYAINYFLNIKKKFGKDKERRTELRVFDTIDATKVAVANEKFYV 487


>gi|262477436|gb|ACY68195.1| DNA gyrase subunit A [Escherichia coli]
          Length = 171

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 106/171 (61%), Positives = 135/171 (78%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMVDLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 171


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/523 (19%), Positives = 209/523 (39%), Gaps = 41/523 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V  + K V
Sbjct: 789  DHTTEEITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFKRNVRKDIKVV 847

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 848  ELAGYVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASA 905

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP +     P VL+NG  GI  G +T
Sbjct: 906  RYIYTRLSPFARRIFHPADEPLLTYNVD-DGHTIEPEIYVPVVPLVLINGADGIGTGWST 964

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V     ++D               P  P      G TG   +    R   
Sbjct: 965  SIPNYNPEDIVANLKCLMDGE-------------PLVPMQPWFRGFTGEVVSLGGERYKF 1011

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R       +     ++ +TE+P +       +++ E+++ +++   I D +D +    
Sbjct: 1012 SGR------ISQVGENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTK 1065

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L    +A  I   L  ++   +++ + N+VA +  G   +  +   IL+ F + 
Sbjct: 1066 VHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPEDILREFYSV 1125

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   +R +Y L++ +     L   A  +  + +   +I   P  +   +EL ++ + A
Sbjct: 1126 RIKFYEKRKQYQLSQLQRDLDKLSNQARFIQMIIDGKLVISKKPKAKLI-QELKEKGFKA 1184

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSE--------VQTRAILELRLARLTGLGRDDIRNE 476
                       +++  +  D     S+             +  + L  LT    + +R +
Sbjct: 1185 FSKISDAAKSGETAPVVEEDDNEEKSDSDDAELGADSYDYLFAMPLWSLTQERVEKLRRQ 1244

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
            +    IE+   +  LS        +   +   K +L+   R R
Sbjct: 1245 IGEKEIEVDNLIK-LSKEDIWRKDLDDFIAEWKFQLEDEGRRR 1286


>gi|308072529|dbj|BAJ21887.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 110/183 (60%), Positives = 138/183 (75%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG
Sbjct: 1   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KD
Sbjct: 61  DTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN 
Sbjct: 121 TVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNK 180

Query: 210 DID 212
           D  
Sbjct: 181 DAS 183


>gi|308198965|dbj|BAJ22617.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 110/185 (59%), Positives = 140/185 (75%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG
Sbjct: 4   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 63

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KD
Sbjct: 64  DIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 123

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ 
Sbjct: 124 TVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSK 183

Query: 210 DIDLD 214
           D  L+
Sbjct: 184 DASLE 188


>gi|224039159|gb|ACN38390.1| DNA gyrase subunit A [Achromobacter denitrificans]
          Length = 163

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/163 (63%), Positives = 134/163 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQ 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y  + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K AH LL D+ ++TV
Sbjct: 61  SVYGTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           DF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 DFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHN 163


>gi|332180630|gb|AEE16318.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
          Length = 648

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 134/504 (26%), Positives = 227/504 (45%), Gaps = 55/504 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +    ++L YA  VI  RAIPD+ DGLKPV RRIL  + ++    + K+ K A + G+
Sbjct: 4   VKNLFDKNFLEYASYVIRDRAIPDIEDGLKPVQRRILHTLFEVD---DGKFNKVANVVGQ 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I  AL  +    + + L IE QGNFG++  GD  +A RY ECRL+  A
Sbjct: 61  CM-KYHPHGDASIGGALVVL----ANKELFIEKQGNFGNLYTGDGASAARYIECRLKPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L         + P+YDG  +EPVV  A+ P  L+ G  GIAVGM+TNI +HN+ EV+
Sbjct: 116 RDVL--YNPAITQYVPSYDGRNKEPVVFRAKLPIALILGAEGIAVGMSTNILSHNVREVI 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              +A +           +    PD  TG +I       + Y  G G I  R        
Sbjct: 174 QAEIACLKGE--------KFALYPDCFTGGLI-----DVSDYQDGLGKITTRAK----LD 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           + D ++IVV E+P+  N   + E I +  +  ++   +    +       + I+L+RG  
Sbjct: 217 TSDPKRIVVRELPFGSNSERLTESIVKAAKNGKLKVAS--VTDYTADKVEIEIKLQRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+ +++ LY +T  +   S N++ +    P+  T+  +++        V+    +    +
Sbjct: 275 AEDVVSALYAFTECEQSISCNLLVIRDNMPQVMTVSDVIRYHAEKLVAVLKDELELERAQ 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             D+ H+     I +                      + +R         +   +     
Sbjct: 335 LIDKLHLRTLERIFI-------------------EERIYKRIEEMKTEAAVSKAVVTGFE 375

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              ++    +SE     +L++ + R++    +  R E+ ++   +KE   +L +   L  
Sbjct: 376 PFRAELIRAVSEDDVAHLLKIPIRRISLYDINKNRQEVQAINKRLKEIEKLLKN---LTA 432

Query: 500 IIKQELLSVKDELD---TPRRTRI 520
                L     +LD   T RRT+I
Sbjct: 433 YAVSWLEGTLAKLDVETTARRTQI 456


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1717

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 205/522 (39%), Gaps = 48/522 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V+ + K V
Sbjct: 784  DHSVDKITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYAMFKRNVKKDMKVV 842

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            +       +    + HG A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 843  ELGGYVSGMTA--YQHGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASA 900

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  +    + DG   EP V     P +L+NG  GI  G +T
Sbjct: 901  RYIHTRLSPFARRIFHAADEPLLKSNID-DGKVIEPEVYVPVVPMILINGADGIGTGWST 959

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA---YATGR 245
            +IP  N  +VV     ++D   +              P      G TG   A        
Sbjct: 960  SIPNFNPEDVVANLRRLMDGESL-------------VPMKPWFRGFTGEVTASGDRYKFS 1006

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESD 304
            G I   G   +E          +TE+P +       +K+ E+++ ++    I D +D + 
Sbjct: 1007 GIIKQTGDCEVE----------ITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNT 1056

Query: 305  RQGYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAF 361
                  +I++        + + L  R+   +++ + NMVA +  G   +  T   ILKAF
Sbjct: 1057 HSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAEDILKAF 1116

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R     +R ++LL +           A  V  + +   +I     P+    EL ++ 
Sbjct: 1117 YAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKPKLI-EELKEKG 1175

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNE 476
            +    I   +D   +       +      + Q        +L + L  LT    + +  +
Sbjct: 1176 FKP--IPKAVDAAKEGENEPAVEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLRQ 1233

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRR 517
            +    +EI   +  LS        + + +   +++L+   RR
Sbjct: 1234 IGDKELEIDALIK-LSKEDLWKRDLDEFITEWRNQLEDEERR 1274


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 205/522 (39%), Gaps = 48/522 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V+ + K V
Sbjct: 784  DHSVDKITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYAMFKRNVKKDMKVV 842

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            +       +    + HG A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 843  ELGGYVSGMTA--YQHGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASA 900

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  +    + DG   EP V     P +L+NG  GI  G +T
Sbjct: 901  RYIHTRLSPFARRIFHAADEPLLKSNID-DGKVIEPEVYVPVVPMILINGADGIGTGWST 959

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA---YATGR 245
            +IP  N  +VV     ++D   +              P      G TG   A        
Sbjct: 960  SIPNFNPEDVVANLRRLMDGESL-------------VPMKPWFRGFTGEVTASGDRYKFS 1006

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESD 304
            G I   G   +E          +TE+P +       +K+ E+++ ++    I D +D + 
Sbjct: 1007 GIIKQTGDCEVE----------ITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNT 1056

Query: 305  RQGYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAF 361
                  +I++        + + L  R+   +++ + NMVA +  G   +  T   ILKAF
Sbjct: 1057 HSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAEDILKAF 1116

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R     +R ++LL +           A  V  + +   +I     P+    EL ++ 
Sbjct: 1117 YAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKPKLI-EELKEKG 1175

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNE 476
            +    I   +D   +       +      + Q        +L + L  LT    + +  +
Sbjct: 1176 FKP--IPKAVDAAKEGENEPAVEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLRQ 1233

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRR 517
            +    +EI   +  LS        + + +   +++L+   RR
Sbjct: 1234 IGDKELEIDALIK-LSKEDLWKRDLDEFITEWRNQLEDEERR 1274


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/525 (22%), Positives = 208/525 (39%), Gaps = 45/525 (8%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +  +    K    ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 1242 HGLPEEYLYGKNTDYLTYNDFINKELVLFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 1300

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG AA+   +  +AQ++  S  L L++  G FG+ 
Sbjct: 1301 N---DKREVKVAQLAGSVAEMSSYHHGEAALMMTIINLAQNFVGSNNLNLLQPIGQFGTR 1357

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  +   +  + + F  + D    EP       P VLVNG
Sbjct: 1358 LHGGKDSASPRYIFTMLSPLARLVFPPMDDNILRFLYD-DNQRVEPEWYMPIIPMVLVNG 1416

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  IP  ++ EVV+    ++D  +            P  P+     G     
Sbjct: 1417 AEGIGTGWACKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTID-- 1464

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G    VI G   I     D   I +TE+P +       E++ E +    EK    
Sbjct: 1465 ---ELGPNQYVISGEVSI----LDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPL 1517

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D ++       R V+++     A+     L++   LQ+  + N + L  +     +  
Sbjct: 1518 ITDYKEYHTDTTVRFVVKMTEDKLAEAEAVGLHKVFKLQTSLTCNSMVLFDHVGFLKKYD 1577

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   ILK F   R      R ++L+      +  L   A  +    +   +I   P  + 
Sbjct: 1578 SPQDILKEFFELRLRYYNLRKEWLIGMLGAESAKLSNQARFILEKIDGKIVIENKP-KKE 1636

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGL 468
              + L+QR + +  +K   +  +        + +   S   +      +L + L  LT  
Sbjct: 1637 LIQVLIQRGYESDPVKAWKEAQNKDEEEGEEEESDKESSSASGPDFNYLLNMPLWYLTKE 1696

Query: 469  GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             +D++  + ++   E++       S S L    K++L +  +ELD
Sbjct: 1697 KKDELCKQRDNKEKELETLKR--KSPSDLW---KEDLAAFIEELD 1736


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/523 (21%), Positives = 212/523 (40%), Gaps = 43/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 777  DHSVAKITYTDFINKELILFSM-ADNQRSIPSVIDGLKPGQRKVLYVSFRRNLKKDMKVV 835

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 836  ELAGHVSGMTA--YQHGDASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGQDCASA 893

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP       P +L+NG  GI  G ++
Sbjct: 894  RYIYTRLSPFARRMFHPADEPLLTYNVD-DGKQIEPENYVPVVPLLLINGADGIGTGWSS 952

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D               P  P      G  G   A    R   
Sbjct: 953  SIPNYNPEDIVDNLKRLMDGE-------------PIKPMQPWFRGFNGEVTAIGGDRFKF 999

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ E+++  +    I D +D +    
Sbjct: 1000 -----SGIIKEAGDKE-VEITELPIRTWTQDFKDKLEEIIKADKTPSFIKDYKDYNTHTK 1053

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
             R VI++        +   L  ++   +++ + N+VA +  G   +  ++  ILK F   
Sbjct: 1054 VRFVIQMDEKHMQSALSEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVDDILKEFFTV 1113

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y L++ +     L   A  V  + +   +I     P        +     
Sbjct: 1114 RLKFYERRKQYQLSELQRELDKLSNQARFVQMIIDGALVISKKKKPVLIAELKEKGFKAI 1173

Query: 425  SDIKDLIDL--IDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNS 479
              + D +     +              +EVQ+ A   +L + L  LT    + +R ++  
Sbjct: 1174 PKVADAVKAGEDEPVVEEGEESEEAEDTEVQSNAYDYLLGMSLWSLTQERVEKLRRQIGE 1233

Query: 480  LGIEIKECLDILSSRSRLLGI-----IKQELLSVKDELDTPRR 517
              +EI   + +  S+  +        I +    ++DE    R+
Sbjct: 1234 REVEIDALIKL--SKEDIWKHDLDVFINEWRFQLEDEARRERK 1274


>gi|313192115|emb|CBX19917.1| gyrase A [Clostridium perfringens]
          Length = 242

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/241 (53%), Positives = 179/241 (74%), Gaps = 1/241 (0%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           +  RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVG
Sbjct: 1   SGMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVG 60

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+
Sbjct: 61  MATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGK 120

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR
Sbjct: 121 GRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDR 179

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+
Sbjct: 180 EGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQ 239

Query: 366 E 366
           +
Sbjct: 240 K 240


>gi|228470872|ref|ZP_04055717.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
 gi|228307269|gb|EEK16283.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 135/524 (25%), Positives = 226/524 (43%), Gaps = 54/524 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E  ++  EEE +G    ++    ++ +L YA  VIL RA+P + DGLKPV RR+L+ M 
Sbjct: 30  DESYVAPKEEEVEGRLH-TLGGMYRHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMH 88

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            M    N    K A+I G  M  YHPHG+A+I DAL ++ Q    +  LI+ QGN+G++ 
Sbjct: 89  LME---NGTLHKVAKIVGATMA-YHPHGDASINDALVQLGQ----KGYLIDTQGNWGNIL 140

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E +L   A  +L   G     +  +YDG  +EPV L AR+P +L  G  
Sbjct: 141 TGDEAAAGRYIEAKLSNFALEIL--FGDKITPWMKSYDGKSREPVYLPARFPLLLAQGAE 198

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++  I  HN  E+++   A +      L         PDFPTG +I       + 
Sbjct: 199 GIAVGLSCKILPHNPKELIEAACAHLRGEPFTL--------YPDFPTGGII-----DVDR 245

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIAD 298
           Y  G+    ++  + IE+   +   + V ++P+    + +++ I +   +   +I  I D
Sbjct: 246 YNDGKRGGQVKSRARIERI--EDRVLSVRDLPFGKTTSTLIDSILKANDKGLIKIKRIDD 303

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +  E+      + I L  G SAD  ++ LY +T  +   S N   +   KP    +  +L
Sbjct: 304 MTAETAD----IRIYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKPRFLGVSDLL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +  V     ++    +  L+  ++         + + +    +     +P+ +TA   + 
Sbjct: 360 RHSVEHTRGLLEEDLRLQLHDRQEEYMGASLERLFIEHRIYKLPAFEDAPDQQTALDVIR 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +          L  + DD            L E++   IL+  L +        +  E+ 
Sbjct: 420 KALEPIVGDSLLRPITDDDLA--------RLLEIKMARILKFNLEK-NEQLILRLTEEMA 470

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRI 520
                      I      +         S+ +E      RRT+I
Sbjct: 471 Q----------IQHHLDHITDYAIHYYSSLLEEYGAGWERRTQI 504


>gi|257456947|ref|ZP_05622128.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
 gi|257445656|gb|EEV20718.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
          Length = 642

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/502 (25%), Positives = 227/502 (45%), Gaps = 49/502 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +      ++L YA  VI  RAIPD+ DGLKPV RRIL  + +M    + K+ K A + G 
Sbjct: 4   VESLFNTNFLEYASYVIRDRAIPDVEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGY 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I +AL  +    + + L I+ QGNFG++  GD  +A RY ECR+ + A
Sbjct: 61  CM-KYHPHGDASIGNALTVL----ANKSLFIDKQGNFGNLFTGDEASAPRYIECRITEFA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L         + P+YDG  +EPVV  A+ P VL+ G  GIAVGM+T I  HN+ E++
Sbjct: 116 KDIL--FNPHITRYVPSYDGRNKEPVVFRAKLPVVLLIGAEGIAVGMSTKILPHNIREII 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +     +      L         PDF TG +I       + Y  G+G +++R        
Sbjct: 174 EAEKDCLSGKSFTL--------YPDFQTGGLI-----DVSEYQDGKGKVLVRAK----LD 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
           + D ++IV+ E+P+     +++  I    +  ++  I+++ D    +   + ++L RG  
Sbjct: 217 TSDDKRIVIRELPFGSTTESLIASIESASKSGKVK-ISEINDY-TAEQVEIELKLPRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A  +++ LY +T  +   S N++ +    P + ++  ++K        ++     Y    
Sbjct: 275 ASDVVDALYAFTDCEQSISCNLLVIQDNLPVQTSVTEVIKTHAKQLTALLKDELMYEQEM 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             DR H+     I +       RI +     +TA   +          K  +        
Sbjct: 335 LTDRLHLRTLERIFIEE-----RIYKKIETMKTAESVIKAVIKGFEPFKAELIR------ 383

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    ++E     +L++ + R++       R E+  +   +KE   +L +  +   
Sbjct: 384 --------EVTEEDVDRLLKIPIRRISLYDIQKNRAEVQEISARLKEIARLLKNLKKYAL 435

Query: 500 IIKQELLSVKDELDTPRRTRIV 521
            +   +L+      T R+T I 
Sbjct: 436 SVLDGILAKLPPEVTARKTEIT 457


>gi|7264712|gb|AAF44323.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 108/164 (65%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPH ++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHCDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|239737041|gb|ACS13100.1| GyrA [Pseudomonas putida]
          Length = 163

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 107/163 (65%), Positives = 131/163 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           D+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 DWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 163


>gi|117654339|gb|ABK55600.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 120/201 (59%), Positives = 161/201 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVRE 290
           E+PYQVN A ++EKIA+LVR+
Sbjct: 181 ELPYQVNXAKLIEKIADLVRD 201


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 197/501 (39%), Gaps = 39/501 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 781  DHSVDKITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 839

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A          + HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 840  ELAGHVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASA 897

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +  +     + +  + DG+  EP V     P +L+NG  GI  G ++
Sbjct: 898  RYIYTRLSPFARRVFHNHDDPLLTYNED-DGAKIEPEVYVPVVPMILINGADGIGTGWSS 956

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V+    ++D               P  P      G TG   A    R   
Sbjct: 957  SIPNYNPEDIVENLKRMMDGE-------------PLKPMQPWFRGFTGEVTAVGQDRFKF 1003

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 1004 -----SGIIKETGDKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 1057

Query: 308  YRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               VI++        I   L   ++ +   +  ++      G   +  ++  I+K F A 
Sbjct: 1058 VHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPEGRITKYASVEDIMKEFYAV 1117

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y LN+ +     L   A  V  + +   +I           EL ++ +  
Sbjct: 1118 RLKYYERRKQYQLNEMQKELDKLSNQARFVQMIIDGKLVI-SKKKKAVLVAELKEKDFKP 1176

Query: 425  -----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                   +K                G   +       +L + +  LT    + +R ++  
Sbjct: 1177 FPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLRRQIGD 1236

Query: 480  LGIEIKECLDILSSRSRLLGI 500
              +EI   + +  S+  +   
Sbjct: 1237 KELEIDTLIKL--SKEDIWKR 1255


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 110/520 (21%), Positives = 204/520 (39%), Gaps = 43/520 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V+ + K V
Sbjct: 701  DHSVDKITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYAMFKRNVKKDMKVV 759

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            +       +    + HG A++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 760  ELGGYVSGMTA--YQHGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASA 817

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  +    + DG   EP V     P +L+NG  GI  G +T
Sbjct: 818  RYIHTRLSPFARRIFHAADEPLLKSNID-DGKVIEPEVYVPVVPMILINGADGIGTGWST 876

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA---YATGR 245
            +IP  N  ++V     ++D   +              P      G TG   A        
Sbjct: 877  SIPNFNPEDIVANLRRLMDGESL-------------VPMKPWFRGFTGEVTASGDRYKFS 923

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESD 304
            G I   G   +E          +TE+P +       +K+ E+++ ++    I D +D + 
Sbjct: 924  GIIKQTGDCEVE----------ITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNT 973

Query: 305  RQGYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAF 361
                  +I++        + + L  R+   +++ + NMVA +  G   +  T   ILKAF
Sbjct: 974  HSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAEDILKAF 1033

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE---VVRIIRFSPNPETARRELM 418
             A R     +R ++LL +           A  V  + +   V+   R +   E  + +  
Sbjct: 1034 YAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKAKLIEELKEKGF 1093

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            +    A D     +          S+    LS      +L + L  LT    + +  ++ 
Sbjct: 1094 KPIPKAVDAAKEGENEPAVEEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLRQIG 1153

Query: 479  SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRR 517
               +EI   +  LS        + + +   +++L+   RR
Sbjct: 1154 DKELEIDALIK-LSKEDLWKRDLDEFITEWRNQLEDEERR 1192


>gi|308072560|dbj|BAJ21897.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 137/182 (75%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+
Sbjct: 1   DYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDT
Sbjct: 61  IAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDT 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D
Sbjct: 121 VDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 180

Query: 211 ID 212
             
Sbjct: 181 AS 182


>gi|308198975|dbj|BAJ22622.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 107/181 (59%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+AL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYNALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|284049781|emb|CBJ15408.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 186

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 109/186 (58%), Positives = 147/186 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++V + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVFVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEI 219
             LME 
Sbjct: 181 QELMEY 186


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 200/513 (38%), Gaps = 34/513 (6%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S +  +QN ++ +++     R+IP + DG KP  R++++   +  +  ++K V
Sbjct: 782  DSTAQRISYSQFLQNEFILFSM-ADNIRSIPSMIDGFKPGQRKVIYSAFKRNLVNDQKVV 840

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 841  ELAGYISEQAAYHH--GEQSLQQTIIGLAQTFVGSNNVNCLEPSGNFGSRLSGGKDSASA 898

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +   L +  ++++ + DG+  EP V     P VLVNG  GI  G +T
Sbjct: 899  RYIHTRLSPFARKVFSKLDEPNLEYQFD-DGNMIEPKVYAPILPMVLVNGADGIGTGWST 957

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP ++   +V+     +   D D          P  P      G  G     A  +   
Sbjct: 958  SIPNYHPMHIVENLRRRMGRFDPDDTE-----EKPFVPMAPWWRGWKGTPEQEAPNKWRF 1012

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRDESDRQG 307
                   I +   +  +I VTE+P ++       K+ +++  +K    I D ++ +D + 
Sbjct: 1013 NGI----IRQDEQNPNEIHVTELPIRMWTDDFKAKLEDIIQNDKTPTFIKDYKEFNDHKT 1068

Query: 308  YRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               +I++        +   L   ++ T+  S  ++      G   +   +  I++ +  +
Sbjct: 1069 VHFIIDMDEKHREAALREGLLEKFKLTTTVSTTNLVAFDTQGKIRKYDNVEEIMEEYYHY 1128

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSW 422
            R ++   R K+ L            L      + E++   ++          +EL  R +
Sbjct: 1129 RLKMYTERKKHWLKVYHAD---YRKLKNQYRFITEIIDNKMVVNRKKKAVLVQELRDRDY 1185

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNS 479
             A   K+   +          +     +         +L + +   T    + ++N++ +
Sbjct: 1186 EAFPPKEDKKVKSPDEEMAAEEAEDDDTAGGARDYDYLLSMPVWSFTSERLERLKNQIAA 1245

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
               E  E   +  S   L     ++L + ++E 
Sbjct: 1246 KKAEHDELQAL--SEKDLW---VKDLDAFQEEW 1273


>gi|308072558|dbj|BAJ21896.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072566|dbj|BAJ21900.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072568|dbj|BAJ21901.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198969|dbj|BAJ22619.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198977|dbj|BAJ22623.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198981|dbj|BAJ22625.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198983|dbj|BAJ22626.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199001|dbj|BAJ22635.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199017|dbj|BAJ22643.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199021|dbj|BAJ22645.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199025|dbj|BAJ22647.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 109/183 (59%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|308072562|dbj|BAJ21898.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072564|dbj|BAJ21899.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072570|dbj|BAJ21902.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072572|dbj|BAJ21903.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072580|dbj|BAJ21907.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198985|dbj|BAJ22627.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198991|dbj|BAJ22630.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199005|dbj|BAJ22637.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199009|dbj|BAJ22639.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199011|dbj|BAJ22640.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199015|dbj|BAJ22642.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199037|dbj|BAJ22653.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199043|dbj|BAJ22656.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199045|dbj|BAJ22657.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199051|dbj|BAJ22660.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 110/183 (60%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|117654337|gb|ABK55599.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 119/199 (59%), Positives = 158/199 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKEXIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELV 288
           E+PYQVN A ++EKIA+LV
Sbjct: 181 ELPYQVNXAKLIEKIADLV 199


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  227 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 105/518 (20%), Positives = 200/518 (38%), Gaps = 37/518 (7%)

Query: 20   SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            S TD +    + +++     R+IP + DGLKP  R++++G  +  +  ++K  + A    
Sbjct: 779  SYTDFVHKELILFSM-ADNMRSIPSMVDGLKPGQRKVIYGAFKRNLVNDQKVAELAGYIS 837

Query: 80   EVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL 135
            EV   +H  G  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ RY   RL
Sbjct: 838  EVAAYHH--GEVSLQQTIVGLAQTYVGSNNVNCLEPSGNFGSRLSGGSDAASARYIHTRL 895

Query: 136  QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
               A  +   L +  ++++ + DG+  EP V     P VLVNG  GI  G +T+IP ++ 
Sbjct: 896  SPFARRIFSKLDEPNLEYQFD-DGNMIEPKVYVPILPMVLVNGADGIGTGWSTSIPNYHP 954

Query: 196  GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             E+VD     +   D +             P      G  G+  +   G       G+  
Sbjct: 955  IEIVDNLKRRMGRLDPEDSEEKAF-----KPMTPWFRGWKGVLES--DGPNRYKFNGI-- 1005

Query: 256  IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIEL 314
            I++   +  +I VTE+P ++       K+ +++R ++    I D R+ +D Q    +I++
Sbjct: 1006 IQQDEQNPNEIHVTELPIRMWTDDFKSKLEDILRAEKTPSFIKDYREFNDHQTVHFIIDM 1065

Query: 315  KRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +       +   L   ++ +   +  ++      G   +      I++ F  +R  +   
Sbjct: 1066 EDKHMKAALDEGLLEKFKLSKSMTTTNLVAFNTRGQIHKYENPEEIMEEFYHYRFNMYTE 1125

Query: 372  RTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSWNASDIKD 429
            R K+ L            L      + E++   +I      +   +EL  R + A   KD
Sbjct: 1126 RKKHWLGVYHAD---YRKLKNQYRFILEIIENKLIVNKKKKDVLVQELRDRKYEAFPPKD 1182

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRN-------ELNS 479
                          D     +         +L + +  LT    + ++N       E + 
Sbjct: 1183 DKKSKSTDEELGKDDAEDEDTSNGARDYDYLLSMPIWSLTNERLEKLKNQIAAKKAEHDE 1242

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            L    ++ L I       +     +L    +     RR
Sbjct: 1243 LDALSEKDLWI-KDLDEFVDEWHTQLKLDAEITADIRR 1279


>gi|7264704|gb|AAF44319.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  227 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 132/164 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|51246133|ref|YP_066017.1| DNA topoisomerase IV subunit A [Desulfotalea psychrophila LSv54]
 gi|50877170|emb|CAG37010.1| probable topoisomerase IV, subunit A [Desulfotalea psychrophila
           LSv54]
          Length = 663

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/639 (22%), Positives = 260/639 (40%), Gaps = 80/639 (12%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + ++L Y   VI  RAIP + DGLKPV RRIL     +    + ++ K A + GE
Sbjct: 8   LHQLFEYNFLEYTSYVIRERAIPAIDDGLKPVQRRIL---QTLFNMEDGRFHKVANLVGE 64

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M K HPHG+A+I+ AL  +    + +  LIE QGNFG++  GD  +A RY ECRL   A
Sbjct: 65  TM-KLHPHGDASIFSALVNL----ANKGFLIERQGNFGNIFTGDSASAPRYIECRLSPLA 119

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L    KD  +F  +YDG   EPV L A+ P +L+ G  GIAVGMAT I  HN  E++
Sbjct: 120 KEVL--FNKDITEFIDSYDGRMVEPVTLPAKLPLLLLQGAEGIAVGMATKIMPHNFCELL 177

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
               AV+ + +  L         PDFP G ++       + Y  G G I  R        
Sbjct: 178 QAQKAVLLDEEFTL--------YPDFPQGGLV-----DVSGYEDGNGKIKCRARIR---- 220

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             + + I++ EIPY     ++ + I +  +  +I  I+   ++   +   + I++ RG  
Sbjct: 221 ELNEKTIIIDEIPYSTTTQSLTDSIEKAAKAGKIKIIS--INDYTAEKVEIEIKVARGIY 278

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A   +  LY +T  +   S N+  + G  P   ++  +++      +  + +  +  L +
Sbjct: 279 AKDTIKALYAFTDCEVPISPNLTLIKGKTPATSSVREVIEYNTLKLKADLTKELEINLAR 338

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++ H         A L E + I           + L +     +  + ++  +D +  
Sbjct: 339 LEEKLH---------ARLLEQIFI----------EQRLYKNIEEETSYESIMASVDTALI 379

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              S+    ++E     +LE+R+ R++    +    E+ ++  +IK     L     ++ 
Sbjct: 380 PFRSELFRDVTEEDVTRLLEIRIKRISRFDINKQDKEIRAIRKDIKAIKISLKD---MVA 436

Query: 500 IIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                +  +  +     PR+T I +    +  +  +    +       GY +        
Sbjct: 437 FTIASIDKLLAKYGENYPRKTEIKQFSEVVVRKIALSNLTV-------GYSRET------ 483

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                  G  G  ++ E+        S +  +    S G      V          +   
Sbjct: 484 -------GFLGHSVKGEEEEDFSVTCSEYDRLFLIYSDGRYKVIPVTDKVFAGTDLKYIG 536

Query: 618 LI------NILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           ++      NI+  +  E    +  F   +      Y +F
Sbjct: 537 IVPSEQVFNIVYRDGNENFAYVKRFNTPKFILEKEYHLF 575


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/521 (18%), Positives = 207/521 (39%), Gaps = 40/521 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 779  DHSTKQITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFKRNLKKDMKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG  ++   +  +AQ +  S  L  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGHVSGMTA--YQHGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  + +   +  + +  + DG   EP +     P +L+NG  GI  G ++
Sbjct: 896  RYIYTRLSPFARRVFNQQDEPLLTYNED-DGEKIEPELYVPVVPLILINGADGIGTGWSS 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V     ++D  + +             P      G  G        R   
Sbjct: 955  SIPNYNPEDIVANLKRMMDGEEPE-------------PMQPWFRGFNGEVTPQGPDRYKF 1001

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R          + +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 1002 SGR------IHELNDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 1055

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 1056 VHFVIQMDEKHLKAAVDEGLEEKFKLSRTIATTNLVAFDPEGRITKYATVSDILKEFFAV 1115

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN- 423
            R +   RR ++ L++ + +       A  +  + +  +++       T   EL ++ +  
Sbjct: 1116 RLKYYERRKQHQLSELQKQLDKFTNQARFIQMIIDG-KLVVSKKKKATLITELKEKGFKP 1174

Query: 424  ----ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                A  +K               +    ++      +L + +  LT    + +  ++  
Sbjct: 1175 FPKVAEAVKAGETEQVVEEEESSEEANTEMASNAYDYLLGMAIWSLTQERVEKLLRQIGD 1234

Query: 480  LGIEIKECLDILSSR---SRLLGIIKQELLSVKDELDTPRR 517
              +EI E + +         L G I +    +++E    R+
Sbjct: 1235 KEVEIDELIKLSKEEIWRRDLDGFINEWRFQLEEEHRRERK 1275


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 98/471 (20%), Positives = 190/471 (40%), Gaps = 37/471 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 653  DHSVSKISYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYACFRRNLKKDMKVV 711

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A +   +    + HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 712  ELAGLVSGMTA--YQHGETSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASA 769

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP       P VL+NG  GI  G ++
Sbjct: 770  RYIYTRLSPFARKIFHTADEPLLTYNED-DGKKIEPETYMPVVPMVLINGADGIGTGWSS 828

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VV+    ++                P  P      G TG       G    
Sbjct: 829  SIPNYNPEDVVNNLKRLMKGE-------------PIEPMQPWFRGFTG--EVVNMGGDRF 873

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
               G+          +++ +TE+P +       +K+ ++++ +++   I D +D +    
Sbjct: 874  KFSGIIK----ETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKDYNTHDK 929

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L        +   L  ++   +S+ + N+VA +  G   +  T+  ILK F   
Sbjct: 930  VHFVIQLDEKNMKAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYATVDDILKEFFTV 989

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR ++ L++ +     L   A  V  + +   +I           EL ++ + A
Sbjct: 990  RLKYYERRKQHQLSELQKELEKLSNQARFVQMIIDGKLVI-SKKKKSVLVNELREKGFKA 1048

Query: 425  -SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGR 470
             + + D   L +D +     +                +L + L  LT   R
Sbjct: 1049 FTKVADAAKLGEDEAVVEEGEEDDDADVEVLSSSYDYLLGMALWSLTHERR 1099


>gi|308199027|dbj|BAJ22648.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199033|dbj|BAJ22651.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199049|dbj|BAJ22659.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 108/181 (59%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|308198979|dbj|BAJ22624.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/183 (59%), Positives = 138/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 DLD 214
             +
Sbjct: 181 SXE 183


>gi|308072574|dbj|BAJ21904.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072576|dbj|BAJ21905.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198973|dbj|BAJ22621.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198987|dbj|BAJ22628.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198993|dbj|BAJ22631.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198995|dbj|BAJ22632.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198997|dbj|BAJ22633.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198999|dbj|BAJ22634.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199013|dbj|BAJ22641.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199047|dbj|BAJ22658.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/183 (59%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDT 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|94471628|gb|ABF21080.1| DNA gyrase subunit A [Acholeplasma multilocale]
          Length = 345

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 105/404 (25%), Positives = 193/404 (47%), Gaps = 61/404 (15%)

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR- 519
           RL RL GL R+ I  E+N +   I     ++S +     ++K++L  +  +    RRT  
Sbjct: 1   RLQRLVGLEREKIAEEMNQIQSRIDYLTQLISDKEEQNRVLKEQLSDIALKYGDDRRTET 60

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I E +++++DE+ I     ++ +S  GY++RV    +R Q+RGG+G   V   ++D ++ 
Sbjct: 61  INESVMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGI-SVNSSNDDPISI 119

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPE 638
             +      VLFF++ G V++ K + +   S  +RG  ++N L+ L   ++IT I+P   
Sbjct: 120 ATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTPEDKITAILPMRN 179

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           ++  +   Y+ F T+ G ++R  +S F  IN++GKIA+ L   D++++V   T E+ + +
Sbjct: 180 EKEKFK--YLTFVTEAGMIKRTDISLFDSINQNGKIAITLKDDDQLVTVMPTTGEDTVFI 237

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             K G+ +R     +R  + R + GV+GI L + D V+        +A            
Sbjct: 238 ANKSGKVIRINEDIVRPLS-RTATGVKGIKLDEDDIVVGAVTSYGIEA------------ 284

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                    I T+S KG  K+T+  ++R
Sbjct: 285 -----------------------------------------ITTISSKGNFKKTALDEYR 303

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           IS R+GKGI+  ++++  + G   A+    + D I+++S  G L
Sbjct: 304 ISGRNGKGIKVMNLNE--KTGDFKAIIAARETDLILIISSDGNL 345



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 101/261 (38%), Gaps = 8/261 (3%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVET 689
            ++M   ++E   +   ++  ++ G +RR    +F    R G+ I++   + D I     
Sbjct: 63  ESVMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGISVNSSNDDPISIATM 122

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG---DQVISMAIVLHADA 746
               + +L  T  G+  R     IR ++ R S G+  ++   G   +  I+  + +  + 
Sbjct: 123 GKMRDWVLFFTNSGKVFRTKAYNIRQYS-RTSRGLPIVNFLNGLTPEDKITAILPMRNEK 181

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +  + + ++      +R      + I      +    +  +         E  +   ++ 
Sbjct: 182 EKFKYLTFVTEAGMIKRTDISLFDSINQNGKIAITLKDDDQLVTVMPTTGEDTVFIANKS 241

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G   R +    R  +R+  G++   + + +    +V        + I  +S KG   +  
Sbjct: 242 GKVIRINEDIVRPLSRTATGVKGIKLDEDD---IVVGAVTSYGIEAITTISSKGNFKKTA 298

Query: 867 VNEIRIASRATKGVVIFSTAK 887
           ++E RI+ R  KG+ + +  +
Sbjct: 299 LDEYRISGRNGKGIKVMNLNE 319



 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 14/153 (9%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           +D +E+   +K   +   L  GD     ++  + SV     EE   ++K     ++ +SE
Sbjct: 32  SDKEEQNRVLKEQLSDIALKYGDDRRTETI--NESVMNIQDEELIPDVKT----MILLSE 85

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ +R    +FRI  R G+GI     +       +         D ++  ++ G + R 
Sbjct: 86  EGYIRRVDPEEFRIQKRGGRGISVNSSNDD----PISIATMGKMRDWVLFFTNSGKVFRT 141

Query: 866 PVNEIRIASRATKGVVIFS----TAKDERVVSV 894
               IR  SR ++G+ I +       ++++ ++
Sbjct: 142 KAYNIRQYSRTSRGLPIVNFLNGLTPEDKITAI 174



 Score = 41.4 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 73/182 (40%), Gaps = 17/182 (9%)

Query: 727 ISLAKGD----QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND---- 778
           I+L  GD    + I+ +++   D +    +  M  +S +  +   D EE    K      
Sbjct: 48  IALKYGDDRRTETINESVMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGI 107

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINE 837
           S    N        +     ++L  +  G   RT +Y+ R  +R+ +G+   +  + +  
Sbjct: 108 SVNSSNDDPISIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTP 167

Query: 838 IGALVAVFPVNDNDQ----IILVSDKGTLIRVPVNEIRIASR-ATKGVVIFSTAKDERVV 892
              + A+ P+ +  +    +  V++ G + R    +I +       G +  +   D+++V
Sbjct: 168 EDKITAILPMRNEKEKFKYLTFVTEAGMIKRT---DISLFDSINQNGKIAITLKDDDQLV 224

Query: 893 SV 894
           +V
Sbjct: 225 TV 226


>gi|308199039|dbj|BAJ22654.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199055|dbj|BAJ22662.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|308199003|dbj|BAJ22636.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199019|dbj|BAJ22644.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/183 (59%), Positives = 139/183 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DLD 214
            L+
Sbjct: 181 SLE 183


>gi|94264176|ref|ZP_01287973.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93455434|gb|EAT05632.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 711

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 135/505 (26%), Positives = 223/505 (44%), Gaps = 54/505 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +      ++L Y   VI  RAIPDL DGLKPV RRIL     +    + ++ K A + G
Sbjct: 57  ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRIL---QTLHNMDDGRFHKVANVVG 113

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           E M K HPHG+A+I+ AL  +    + +  LI+ QGNFG+V  GD  +A RY ECRL   
Sbjct: 114 ETM-KLHPHGDASIFSALVNL----ANKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 168

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A        K+  +F  +YDG  +EPV L AR P +L+ G  GIAVGMAT I  HN GE+
Sbjct: 169 AR--ETMFNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 226

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     ++     +L         PDFP G ++       + Y  G G +  R       
Sbjct: 227 LTASKQILREEPFEL--------FPDFPQGGLL-----DASGYEDGNGRLRCRARIE--- 270

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + D + IV+ +IPY     +++E + +  R  +   ++   D+   +   + I+L RG 
Sbjct: 271 -TRDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFKILS--IDDYTAEDVEIEIKLARGF 327

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+  +  LY +T  +   S N   +    P   T+  +L+   A   +++ +  +  L 
Sbjct: 328 KAEETIKALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENTARLRQLLKKELELDLA 387

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           + R++           A L E + I             L ++      +  ++  ID + 
Sbjct: 388 RLREKLQ---------ARLLEQIFI----------EERLYKQIEECPSLAVVLTTIDKAL 428

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               ++    +S      +LE+R+ R++    +  + E+  +  +I      L+    L 
Sbjct: 429 KPFAAELVRPVSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEKNLAD---LT 485

Query: 499 GIIKQELLSVKDELDT--PRRTRIV 521
               + L  +        PRRT + 
Sbjct: 486 AYAIRFLDDLLKRYGQQYPRRTELT 510


>gi|308199029|dbj|BAJ22649.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199031|dbj|BAJ22650.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/181 (59%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|308198989|dbj|BAJ22629.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199007|dbj|BAJ22638.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199059|dbj|BAJ22664.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|188994336|ref|YP_001928588.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis ATCC
           33277]
 gi|188594016|dbj|BAG32991.1| DNA topoisomerase IV A subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 898

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 132/504 (26%), Positives = 221/504 (43%), Gaps = 49/504 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    +N YL YA  VIL RA+P + DGLKPV RRIL+ M       N +  K A+++G+
Sbjct: 39  LGGMYRNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMH--HWFDNGRMNKVAKVTGQ 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M   HPHG+A+I DAL ++ Q    +  LIE QGN+G++  GD  AA RY E +L   A
Sbjct: 97  TMA-LHPHGDASINDALVQLGQ----KGYLIETQGNWGNILTGDEAAAGRYIEAKLSALA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
                        ++ +YDGS  EPV L  ++P +L  G  GIAVG+ + +  HNLGE++
Sbjct: 152 Q--ETLFNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELL 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
             C+A +     DL         PDFPTG ++       + Y  GR    I+  + I K 
Sbjct: 210 MACIAHLRGESFDL--------YPDFPTGGMM-----DASRYNDGRRGGQIKSRAKIRKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 + +TE+P     ++++E I +   + +I       D+       + I L  G S
Sbjct: 257 DNR--TLSITELPCGKTTSSLIESILKANEKGKIKIK--RIDDMTAAEADIRIHLAAGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP    +  +L+       E++ +     L +
Sbjct: 313 SDKTIDALYAFTDCEVSQSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLEE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
            R++      LA ++  +    RI +     E    +       A         ++  ++
Sbjct: 373 KREQY-----LAASLERIFIEERIYKDREFEEAESEQDALMHVEA--------RLEPYAH 419

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                 T        + +LE+R+AR+           +  L  +I E      +   +  
Sbjct: 420 RFIRPVTYD----DLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAELEK---NIREITA 472

Query: 500 IIKQELLSVKDELDT--PRRTRIV 521
              +    + +   +  PRRT+++
Sbjct: 473 YTIRWFEYLHEHYASRFPRRTQLI 496


>gi|313674754|ref|YP_004052750.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
 gi|312941452|gb|ADR20642.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
          Length = 867

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 141/590 (23%), Positives = 244/590 (41%), Gaps = 75/590 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++K    ++++   +N +L YA  VIL RA+P   DG KPV RRI+  M +M    + 
Sbjct: 17  EDKDKLHNVIAVSGMYENWFLDYASYVILERAVPANEDGFKPVQRRIMHAMKEMD---DG 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           ++ K A I G+ M  YHPHG+A+I D++  M Q    + +LIE QGN+G +  GD  AA 
Sbjct: 74  RFNKVANIIGQTMQ-YHPHGDASIGDSIVNMGQ----KDILIETQGNWGDIRTGDSSAAP 128

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A  L       T +++ +YDG  +EPV L  ++P +L  G  GIAVG++T
Sbjct: 129 RYIEARLSKFA--LDVVFNPQTTEWQLSYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLST 186

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  HN  E++  C+ V+ N  I++         PDFPTG +        + Y  G    
Sbjct: 187 KILPHNFCELIKACIDVLKNKKIEI--------YPDFPTGGM-----ADFSEYNQGLRGG 233

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE   G++  +++  IP+      ++E I +     +         ++  +  
Sbjct: 234 KIRVRAKIE--EGEKRTLLIKNIPFGTTTTGLIESIIK--ANDKGKIKVKKVVDNTAKDV 289

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + ++L  G S D+ ++ LY +T  +   S N   +   KP    +  ILK  V      
Sbjct: 290 EIEVQLAAGQSPDITIDALYAFTDCEISISPNACVIIEDKPIFLPVNEILKKNVEDT--- 346

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
                   L        +  G  +       + +I             + +        +
Sbjct: 347 --------LGLLERELEIRRGELMEKILFSSLEKIF--------IENRIYRNIEECETWE 390

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            +++ ID             +++     + E+++ R++   +      +  L  E+ +  
Sbjct: 391 AVLETIDKGLEPFKPQFYREITQDDIIRLTEIKIKRISKFDKFKADELMRKLEDELAQVE 450

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             L +   L          + ++      R+T I             ++   V   +   
Sbjct: 451 HHLKN---LTEYAIDYYKGLLEKYGKGKERKTEI--------KSFDNIQAHTVAANNQKL 499

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +V R             +G  G  M+ ++FVTD    S    V+ F   G
Sbjct: 500 FVNRQ------------EGFIGYGMKKDEFVTD---CSDLDDVIAFKRDG 534


>gi|308199053|dbj|BAJ22661.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/181 (59%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|94270066|ref|ZP_01291646.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93450953|gb|EAT01942.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 662

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 135/505 (26%), Positives = 223/505 (44%), Gaps = 54/505 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +      ++L Y   VI  RAIPDL DGLKPV RRIL     +    + ++ K A + G
Sbjct: 8   ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRIL---QTLHNMDDGRFHKVANVVG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           E M K HPHG+A+I+ AL  +    + +  LI+ QGNFG+V  GD  +A RY ECRL   
Sbjct: 65  ETM-KLHPHGDASIFSALVNL----ANKGYLIDRQGNFGNVHTGDGASAPRYIECRLSPL 119

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A        K+  +F  +YDG  +EPV L AR P +L+ G  GIAVGMAT I  HN GE+
Sbjct: 120 AR--ETMFNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 177

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     ++     +L         PDFP G ++       + Y  G G +  R       
Sbjct: 178 LTASKQILREEPFEL--------FPDFPQGGLL-----DASGYEDGNGRLRCRARIE--- 221

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + D + IV+ +IPY     +++E + +  R  +   ++   D+   +   + I+L RG 
Sbjct: 222 -TRDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFKILS--IDDYTAEDVEIEIKLARGF 278

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+  +  LY +T  +   S N   +    P   T+  +L+   A   +++ +  +  L 
Sbjct: 279 KAEETIKALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENTARLRQLLKKELELDLA 338

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           + R++           A L E + I             L ++      +  ++  ID + 
Sbjct: 339 RLREKLQ---------ARLLEQIFI----------EERLYKQIEECPSLAVVLTTIDKAL 379

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               ++    +S      +LE+R+ R++    +  + E+  +  +I      L+    L 
Sbjct: 380 KPFAAELVRPVSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEKNLAD---LT 436

Query: 499 GIIKQELLSVKDELDT--PRRTRIV 521
               + L  +        PRRT + 
Sbjct: 437 AYAIRFLDDLLKRYGQQYPRRTELT 461


>gi|255030250|ref|ZP_05302201.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 213

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/210 (49%), Positives = 144/210 (68%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
            HNL E+++  +  +DNP    D +M+I++
Sbjct: 184 PHNLTEIIEAVIKRLDNPLCTTDDIMKIVK 213


>gi|34541272|ref|NP_905751.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis W83]
 gi|34397588|gb|AAQ66650.1| DNA topoisomerase IV, A subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 898

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 132/504 (26%), Positives = 221/504 (43%), Gaps = 49/504 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    +N YL YA  VIL RA+P + DGLKPV RRIL+ M       N +  K A+++G+
Sbjct: 39  LGGMYRNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMH--HWFDNGRMNKVAKVTGQ 96

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M   HPHG+A+I DAL ++ Q    +  LIE QGN+G++  GD  AA RY E +L   A
Sbjct: 97  TMA-LHPHGDASINDALVQLGQ----KGYLIETQGNWGNILTGDEAAAGRYIEAKLSALA 151

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
                        ++ +YDGS  EPV L  ++P +L  G  GIAVG+ + +  HNLGE++
Sbjct: 152 Q--ETLFNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELL 209

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
             C+A +     DL         PDFPTG ++       + Y  GR    I+  + I K 
Sbjct: 210 MACIAHLRGESFDL--------YPDFPTGGMM-----DASRYNDGRRGGQIKSRAKIRKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 + +TE+P     ++++E I +   + +I       D+       + I L  G S
Sbjct: 257 DNR--TLSITELPCGKTTSSLIESILKANEKGKIKIK--RIDDMTAAEADIRIHLAAGVS 312

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +D  ++ LY +T  +   S N   +   KP    +  +L+       E++ +     L +
Sbjct: 313 SDKTIDALYAFTDCEVSQSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLEE 372

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
            R++      LA ++  +    RI +     E    +       A         ++  ++
Sbjct: 373 KREQY-----LAASLERIFIEERIYKDREFEEAESEQDALMHVEA--------RLEPYAH 419

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                 T        + +LE+R+AR+           +  L  +I E      +   +  
Sbjct: 420 RFIRPITYD----DLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAELEK---NIREITA 472

Query: 500 IIKQELLSVKDELDT--PRRTRIV 521
              +    + +   +  PRRT+++
Sbjct: 473 YTIRWFEYLHEHYASRFPRRTQLI 496


>gi|117654327|gb|ABK55594.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 203

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/203 (58%), Positives = 162/203 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKR 292
           E+ YQVNKA ++EKIA+LV +K+
Sbjct: 181 ELXYQVNKAKLIEKIADLVXDKK 203


>gi|308072578|dbj|BAJ21906.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 108/525 (20%), Positives = 208/525 (39%), Gaps = 46/525 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L    +  ++ + K V
Sbjct: 781  DHSVAKITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLHTCFRRNLKKDMKVV 839

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +   +H  G+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 840  ELAGHVSGMTAYHH--GDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASA 897

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 898  RYIYTRLSPFARKVFHSADEPLLTYNED-DGKKIEPEVFMPVVPMILINGADGIGTGWSS 956

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VV+    ++                P  P      G TG   A    R   
Sbjct: 957  SIPNYNPEDVVNNLKRLMAGE-------------PTEPMQPWFRGFTGEVVAVGGDRFKF 1003

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I +  G++E + +TE+P +       +K+ E+++ +++   I D RD +    
Sbjct: 1004 -----SGIIRECGEKE-VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTK 1057

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+L        +   L  ++   +++ + N+VA +  G   +  T+  ILK F   
Sbjct: 1058 VHFIIQLDEKHMKVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVV 1117

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR ++ L   +     L   A  V  + +   +I     P        +     
Sbjct: 1118 RLKYYERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISKKKKPVLIAELKDKGFKPI 1177

Query: 425  SDIKDLIDLIDDSSYTI-------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            S + +   + +D              + T  LS      +L + +  LT    + +R ++
Sbjct: 1178 SKVAEAPKMGEDEPVVEEEGEEESDDNDTQKLSSSF-DYLLSMPMWSLTQERVEKLRRQI 1236

Query: 478  NSLGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
                 E+         DI +    L   I++    ++DE    R+
Sbjct: 1237 GDKETEVDVLIKLSKEDIWTRD--LDEFIQEWRFQLEDEDRRARK 1279


>gi|19702310|gb|AAL93251.1|AF487466_1 DNA Gyrase A [Yersinia pestis]
 gi|7264710|gb|AAF44322.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDRAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|3510606|gb|AAC33552.1| gyrase subunit A [Chlamydia trachomatis]
          Length = 179

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/176 (56%), Positives = 129/176 (73%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           E RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMA
Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 96/520 (18%), Positives = 199/520 (38%), Gaps = 38/520 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V+ + K V
Sbjct: 779  DHSTKQITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFKRNVKKDMKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  L  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGHVSGMTA--YQHGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP +     P +L+NG  GI  G ++
Sbjct: 896  RYIYTRLSPFARRVFHQADEPLLTYNED-DGEKIEPELYVPVVPLILINGADGIGTGWSS 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVV     ++D  + +             P      G  G        R   
Sbjct: 955  SIPNYNPEEVVANLKRMMDGEEPE-------------PMQPWFRGFKGEVTQQGPDRYKF 1001

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                           +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 1002 SGL------IKEVSDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 1055

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 1056 VHFVIQMDEKHLKAAVSEGLEEKFKLSRTIATSNLVAFDPEGRITKYATVSDILKEFYAV 1115

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR ++ L++ +         A  V  + +   +I     P        +     
Sbjct: 1116 RLKYYERRKQHQLSELQKELDKFTNQARFVQMIIDGKLVISKKKKPVLIAELKEKGFKPF 1175

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGRDDIRNELNSL 480
              + + +   +        + +   +          +L + +  LT    + +  ++   
Sbjct: 1176 PKVSEAVKAGETEQVVEEDESSEEANVEVASNAYDYLLGMAIWSLTQERVEKLLRQIGEK 1235

Query: 481  GIEIKECLDILSS---RSRLLGIIKQELLSVKDELDTPRR 517
              EI E + +      R  L   I +    +++E    R+
Sbjct: 1236 ETEIDELIKLSKEDIWRRDLDDFINEWRFQLEEEQRRERK 1275


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 205/523 (39%), Gaps = 43/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 673  DHSVSKISYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 731

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 732  ELAGHVSGMTA--YQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCASA 789

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 790  RYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSS 848

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D  +               P      G TG       G    
Sbjct: 849  SIPNYNPEDIVDNLKRLMDGEETR-------------PMQPWFRGFTG--EVTDVGGDRF 893

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
               G+          +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 894  KFSGIIK----ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 949

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L        +   L  ++   +++ + N+VA +  G   +  T+  ILK F  +
Sbjct: 950  VHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTY 1009

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   +R +Y L++ +     L   A  V  + +   ++         +    +     
Sbjct: 1010 RLKFYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKAF 1069

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + + +   ++       D      + +        +L + +  LT    + +R ++  
Sbjct: 1070 PKVAEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRRQIGE 1129

Query: 480  LGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
              +E+         DI      L   I +    ++DE    R+
Sbjct: 1130 KEVEVDALIKMSKEDIWKRD--LDDFIAEWRFQLEDEHRRQRK 1170


>gi|7264706|gb|AAF44320.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|7264708|gb|AAF44321.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 108/164 (65%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPH ++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHDDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|29602635|gb|AAO85704.1| GyrA [Campylobacter jejuni]
          Length = 178

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 107/178 (60%), Positives = 133/178 (74%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK
Sbjct: 1   SDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVK 60

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE 
Sbjct: 61  SARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEA 120

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 121 KMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIP 178


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 209/519 (40%), Gaps = 38/519 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 788  DHSVEKITYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 846

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 847  ELAGHVSGMTA--YQHGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASA 904

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 905  RYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGWSS 963

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    +++  +I              P      G TG   +    R   
Sbjct: 964  SIPNYNPEDVVDNLKRLMNGEEIK-------------PMQPWFRGFTGEVTSIGGDRFKF 1010

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +G++E + +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 1011 -----SGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 1064

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 1065 VHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAV 1124

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y LN+ +     L   A  V  + +   ++              +     
Sbjct: 1125 RLKYYERRKQYQLNEMQKELEKLSNQARFVQMIIDGELVVSKKKKNVLVVELKDKGFKPF 1184

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + D     +        + +  + +          +L + +  LT    + +R ++  
Sbjct: 1185 PKVADAAKAGEAEPAAEDEEESEDVDDTSNLSNAYDYLLGMAIWSLTQERVERLRRQIGD 1244

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-RR 517
              +EI   +  LS        +   +   + +LD   RR
Sbjct: 1245 KEMEIDTLIK-LSKEDIWKRDLDDFINEWRFQLDDEARR 1282


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1566

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 99/538 (18%), Positives = 201/538 (37%), Gaps = 51/538 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++ ++ ++ T+ +    + +++     R+IP + DG KP  R++LF   +  +
Sbjct: 716  FEPGTHLDQNVSQITYTEFINKELILFSM-ADNIRSIPSMVDGFKPGQRKVLFACFKRKL 774

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
               K  +K A++ G       + HG A++   +  +AQ++  S  + ++   G FG+   
Sbjct: 775  ---KAEIKVAQLGGYCSEHSAYHHGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRAS 831

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    ++K    +      + +++    DG+  EP       P VLVNG  
Sbjct: 832  GGKDAASARYIFTNVEKITRVIFPPADDNVLNYL-TDDGTQIEPEWYIPILPMVLVNGSS 890

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +++IP +N  ++V+     + N              P  P      G TG   +
Sbjct: 891  GIGTGWSSDIPNYNPVDIVNNLRRRLANE-------------PMEPMHPWFRGFTGQITS 937

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIAD 298
             A G+  ++       E    D + I +TE+P +V   +  E+I   +   +K    + D
Sbjct: 938  EAPGKYKVLG------EWDQPDEDTIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKD 991

Query: 299  LRDESDRQGYRVVIELKR---GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
             R+         +I L      A     + ++++ ++  S+ ++     +G   +  T  
Sbjct: 992  YREYHTETTVHFIISLTERGKDAIKKEGIEKVFKLSANLSITNMVCFDPSGKIKKYSTPE 1051

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL  F   R     +R +YL+N        L   A  V  + E   ++           
Sbjct: 1052 QILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIEKKLVVSNRK-KAEIVA 1110

Query: 416  ELMQRSWNASDIKDLIDLIDDS-SYTIGSDGTMYLSEVQT-------RAILELRLARLTG 467
            EL +  +    +K       D             +++++          +L + ++RLT 
Sbjct: 1111 ELRKLEFRPFPVKAKPKTAGDPDQADEEGVEEEEVADLKAAGTAGDFDYLLGMAISRLTA 1170

Query: 468  LGRDDIRNELNSLGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
                 +  E +    E++        D+  +   L          +    +  RR  I
Sbjct: 1171 EQVAKLLAERDDKEKELQILLEKTAEDLWHADLDLFEQEW---RRIMTSDNDSRRASI 1225


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 209/519 (40%), Gaps = 38/519 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 710  DHSVEKITYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 768

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 769  ELAGHVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASA 826

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 827  RYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGWSS 885

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    +++  +I              P      G TG   +    R   
Sbjct: 886  SIPNYNPEDVVDNLKRLMNGEEIK-------------PMQPWFRGFTGEVTSIGGDRFKF 932

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +G++E + +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 933  -----SGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 986

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 987  VHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAV 1046

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y LN+ +     L   A  V  + +   ++              +     
Sbjct: 1047 RLKYYERRKQYQLNEMQKELEKLSNQARFVQMIIDGELVVSKKKKNVLVVELKDKGFKPF 1106

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + D     +        + +  + +          +L + +  LT    + +R ++  
Sbjct: 1107 PKVADAAKAGEAEPAAEDEEESEDVDDTSNLSNAYDYLLGMAIWSLTQERVERLRRQIGD 1166

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-RR 517
              +EI   +  LS        +   +   + +LD   RR
Sbjct: 1167 KEMEIDTLIK-LSKEDIWKRDLDDFINEWRFQLDDEARR 1204


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 209/519 (40%), Gaps = 38/519 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 783  DHSVEKITYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 841

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 842  ELAGHVSGMTA--YQHGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCASA 899

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 900  RYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGWSS 958

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    +++  +I              P      G TG   +    R   
Sbjct: 959  SIPNYNPEDVVDNLKRLMNGEEIK-------------PMQPWFRGFTGEVTSIGGDRFKF 1005

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +G++E + +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 1006 -----SGIIKETGEKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 1059

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 1060 VHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFAV 1119

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y LN+ +     L   A  V  + +   ++              +     
Sbjct: 1120 RLKYYERRKQYQLNEMQKELEKLSNQARFVQMIIDGELVVSKKKKNVLVVELKDKGFKPF 1179

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + D     +        + +  + +          +L + +  LT    + +R ++  
Sbjct: 1180 PKVADAAKAGEAEPAAEDEEESEDVDDTSNLSNAYDYLLGMAIWSLTQERVERLRRQIGD 1239

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-RR 517
              +EI   +  LS        +   +   + +LD   RR
Sbjct: 1240 KEMEIDTLIK-LSKEDIWKRDLDDFINEWRFQLDDEARR 1277


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1846

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 102/512 (19%), Positives = 202/512 (39%), Gaps = 40/512 (7%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            ++  + +    + +++     R+IP + DGLKP  R++++   +  +  + K V+ A   
Sbjct: 811  LTYDNFINKELILFSM-ADNLRSIPSVIDGLKPGQRKVMYACFKRNLTNDMKVVELAGYV 869

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECR 134
             +V   +H  G A++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY   R
Sbjct: 870  SQVSAYHH--GEASMQMTIVGLAQNFVGSNNVNCLEPSGNFGSRLQGGSDAASARYIFTR 927

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L   A  +   L    +++  + DG   EPV      P VL+NG  GI  G +TNIP ++
Sbjct: 928  LSPFARRVYSALDDPVLEYNVD-DGRSIEPVTYFPVVPMVLINGADGIGTGWSTNIPNYH 986

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR----GSIVI 250
              E+V+     +   D   +        P         G  G        R    G I  
Sbjct: 987  PVEIVNNLKRRMGRLDDSGEE------KPFETMMPWFRGWKGTAEPAGPDRYKFNGIIRE 1040

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYR 309
             G + +E          +TE+P ++       K+ E+++ +++   I D ++ +D +   
Sbjct: 1041 TGDTEVE----------ITELPIRMWTDDFKAKLEEIIKAEKVPSFIKDYKEFNDHKTVH 1090

Query: 310  VVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFRE 366
            ++I++        ++  L  ++   +++ + N+VA +  G   +   +  IL+ F   R 
Sbjct: 1091 MIIQMDDKHMKAALVEGLAEKFKLNKTVATSNLVAFDHRGQIRKYEKVEDILEEFYEQRF 1150

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++   R  Y +NK       L   A  V  + E   I+     P     EL +R +    
Sbjct: 1151 KMYTVRKAYWVNKLNVEYRKLTNQARFVTEIIENKLIVSKKKKPVLV-AELRKRGYEGFP 1209

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSE----VQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                     ++   + ++  + + E         +L L +  LT    D +  + +    
Sbjct: 1210 KVSEAKKAGETDDVVENEEEVGIDEDAGARDFDYLLGLPIWSLTQERVDKLNKQKDDKKD 1269

Query: 483  EIKECLDILSSR---SRLLGIIKQELLSVKDE 511
            EI     +         L   + +    +K +
Sbjct: 1270 EIDTLERLSEKDLWCEDLDAFVLEWEDQLKQD 1301


>gi|224458688|gb|ACN43207.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 255

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 123/280 (43%), Positives = 174/280 (62%), Gaps = 26/280 (9%)

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR 
Sbjct: 1   SITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 60

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++
Sbjct: 61  GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQK 120

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++      
Sbjct: 121 VVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ------ 174

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q +AIL++RL RLTGL R+ I  E  SL   I E
Sbjct: 175 --------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAE 214

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
             +IL++  ++L II++EL  +K+  +  RRT IV   L+
Sbjct: 215 LKEILANEEKVLEIIREELTEIKERFNDERRTEIVTAGLE 254


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 114/538 (21%), Positives = 210/538 (39%), Gaps = 49/538 (9%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             ++ TD +    + +++     R+IP + DGLKP  R++L    +  ++ + K V+ A  
Sbjct: 662  KITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLHTCFRRNLKKDMKVVELAGH 720

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
               +   +H  G+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ RY   
Sbjct: 721  VSGMTAYHH--GDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASARYIYT 778

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G +++IP +
Sbjct: 779  RLSPFARKVFHSADEPLLTYNED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNY 837

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            N  EVV+    ++                P  P      G TG   A    R        
Sbjct: 838  NPEEVVNNLKRLMAGE-------------PTEPMQPWFRGFTGEVVAVGGDRFKF----- 879

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVI 312
            S I +  G++E + +TE+P +       +K+ E+++ +++   I D RD +       +I
Sbjct: 880  SGIIRECGEKE-VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFII 938

Query: 313  ELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVV 369
            +L        +   L  ++   +++ + N+VA +  G   +  T+  ILK F   R +  
Sbjct: 939  QLDEKHMKVALTEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVVRLKYY 998

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RR ++ L   +     L   A  V  + +   +I     P+       +     S + +
Sbjct: 999  ERRKQFQLADLQRDLEKLSNQARFVQMIIDGKLVISKKKRPDLIAELKDKGFKPISKVAE 1058

Query: 430  LIDLIDDSSYTI-------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
               + +D              + T  LS      +L + +  LT    + +R ++     
Sbjct: 1059 APKMGEDEPVVEEEGEEESDDNDTQKLSSSF-DYLLSMPMWSLTQERVEKLRRQIGDKET 1117

Query: 483  EIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            E+         DI +    L  +IK     +           I E    +EDED   R
Sbjct: 1118 EVDVLIKLSKEDIWTRD--LDELIKLSKEDIWTRDLDE---FIQEWRFQLEDEDRRAR 1170


>gi|31745505|gb|AAP55226.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745491|gb|AAP55219.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|31745497|gb|AAP55222.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|47419976|gb|AAT27340.1| DNA gyrase A [Campylobacter jejuni]
          Length = 274

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 113/296 (38%), Positives = 178/296 (60%), Gaps = 26/296 (8%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT + L 
Sbjct: 5   MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQ 64

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +                  
Sbjct: 65  KARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------------------ 106

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 107 --------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLE 158

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  
Sbjct: 159 NLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEK 218

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+
Sbjct: 219 QKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ++T++ +G+ KR  S  +    R GKG  A      +    + + F  N +D ++ 
Sbjct: 195 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDD---FIESFFTANTHDTLMF 251

Query: 856 VSDKGTLIRVPVNEIRIASRATK 878
           V+D+G L  + V +I   SR  K
Sbjct: 252 VTDRGQLYWLKVYKIPEGSRTAK 274


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/503 (16%), Positives = 182/503 (36%), Gaps = 32/503 (6%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              +  +     +S  D +    + +++     R+IP + DGLKP  R++L+   +  ++ 
Sbjct: 791  PGQHLDLTTPDISYDDFVNKELILFSM-ADNVRSIPSVIDGLKPGQRKVLYTCFRRNIKK 849

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
            + K V+ A          H  G A++   +  +AQ++  +  +  +E  GNFGS    G 
Sbjct: 850  DVKVVELAGSVSGSTDYAH--GEASMQGTIVNLAQNFVGTNNINFLEPSGNFGSRLKGGA 907

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A+ RY   RL   A  +        + +  + DG   EP +     P +L+NG  GI 
Sbjct: 908  DAASARYIYTRLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIG 966

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G ++ IP  N  ++++     +  P    + +  +I            G TG       
Sbjct: 967  TGWSSEIPNFNPMDIIENIKRRMQ-PGATKEDMTPMIP--------WYKGFTGTTTELGP 1017

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDE 302
             R                   ++ +TE+P +       EK+ E+++ ++    I D  D 
Sbjct: 1018 DRYQFTGTVR------QTGDNEVEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDY 1071

Query: 303  SDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +       +I+++    A+ +   L + ++    QS  ++     +G   +  T++ I++
Sbjct: 1072 NTPDRVHFIIKMEDKYMAEAVTKGLEEYFKLFKPQSTSNLVAFDAHGRIHKYATVLDIIE 1131

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             F   R     +R ++ L         +   A  +  + +   I+         +     
Sbjct: 1132 EFYHVRLRYYEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLIVSKKKKAVLVQELKKL 1191

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNE 476
                   +++     +   Y           EV       +L + +  LT    + +  +
Sbjct: 1192 GFTPFPKVEEAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQ 1251

Query: 477  LNSLGIEIKECLDILSSRSRLLG 499
            +     EI   + +  S   +  
Sbjct: 1252 IGEKQHEIDTLIKL--SPKDIWK 1272


>gi|28916602|gb|AAO59534.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 129/217 (59%), Positives = 169/217 (77%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRG 
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGF 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 121 ITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 180

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 181 MRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|313192093|emb|CBX19906.1| gyrase A [Clostridium perfringens]
          Length = 231

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 135/232 (58%), Positives = 177/232 (76%), Gaps = 1/232 (0%)

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVN
Sbjct: 1   GSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVN 60

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI
Sbjct: 61  GSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGI 120

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TG+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+
Sbjct: 121 RAAYETGKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGIS 179

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P
Sbjct: 180 DLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQP 231


>gi|28916604|gb|AAO59535.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 130/217 (59%), Positives = 170/217 (78%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGS 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 121 IPIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 180

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 181 MRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|311353018|gb|ADP93694.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353020|gb|ADP93695.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 172/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMAYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 231


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/521 (17%), Positives = 195/521 (37%), Gaps = 39/521 (7%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              +  +     +S  D +    + +++     R+IP + DGLKP  R++L+   +  ++ 
Sbjct: 789  PGQHLDLTTPDISYDDFVNKELILFSM-ADNVRSIPSVIDGLKPGQRKVLYTCFRRNIKK 847

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
            + K V+ A          H  G A++   +  +AQ++  +  +  +E  GNFGS    G 
Sbjct: 848  DVKVVELAGSVSGSTDYAH--GEASMQGTIVNLAQNFVGTNNINYLEPSGNFGSRLKGGA 905

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A+ RY   RL   A  +        + +  + DG   EP +     P +L+NG  GI 
Sbjct: 906  DAASARYIYTRLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIG 964

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G ++ IP  N  +++      ++ P    D +  +I            G TG       
Sbjct: 965  TGWSSEIPNFNPMDIIANIRRRME-PGATKDDMTPMIP--------WYKGFTGTTTEIGP 1015

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDE 302
             R                   ++ +TE+P +       EK+ E+++ ++    I D  D 
Sbjct: 1016 DRYQFTGTVR------QTGDNEVEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDY 1069

Query: 303  SDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +       +I+++    A+ +   L + ++    QS  ++     +G   +  T++ I++
Sbjct: 1070 NTPDRVHFIIKMEDKYMAEAVTKGLEEYFKLFKPQSTSNLVAFDAHGRIHKYATVLDIIE 1129

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             F   R     +R ++ L         +   A  +  + +  ++           +EL +
Sbjct: 1130 EFYHIRLRYYEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDG-KLTVSKKKKAVLVQELKK 1188

Query: 420  RSWNA----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
              +       + K   ++ D        D  + +S      +L + +  LT    + +  
Sbjct: 1189 LGFTPFPKVEEAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMK 1248

Query: 476  ELNSLGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDE 511
            ++     EI         DI +    L   + +  L +++E
Sbjct: 1249 QIGEKQHEIDTLIKLSPKDIWNVD--LDAFMDEWNLQLEEE 1287


>gi|117654335|gb|ABK55598.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 198

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 115/197 (58%), Positives = 155/197 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAE 286
           E+P QVNKA ++E IA+
Sbjct: 181 ELPXQVNKAKLIEXIAD 197


>gi|311352854|gb|ADP93612.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 172/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 231


>gi|31745481|gb|AAP55214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|118566971|gb|ABL01796.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|154243307|gb|ABS71826.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/165 (62%), Positives = 132/165 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + R+AQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|118566975|gb|ABL01798.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566973|gb|ABL01797.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 131/163 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|113126858|gb|ABI30277.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243299|gb|ABS71822.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243303|gb|ABS71824.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243305|gb|ABS71825.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/165 (63%), Positives = 132/165 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/521 (18%), Positives = 206/521 (39%), Gaps = 43/521 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 669  DHSTKQITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFKRNLKKDMKVV 727

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG  ++   +  +AQ +  S  L  +E  GNFGS    G   A+ 
Sbjct: 728  ELAGHVSGMTA--YQHGETSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASA 785

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  + +   +  + +  + DG   EP +     P +L+NG  GI  G ++
Sbjct: 786  RYIYTRLSPFARRVFNQQDEPLLTYNED-DGEKIEPELYVPVVPLILINGADGIGTGWSS 844

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V     ++D  + +             P      G  G        R   
Sbjct: 845  SIPNYNPEDIVANLKRMMDGEEPE-------------PMQPWFRGFNGEVTPQGPDRYKF 891

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R          + +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 892  SGR------IHELNDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 945

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 946  VHFVIQMDEKHLKAAVEEGLEEKFKLSRTIATTNLVAFDPEGRITKYATVSDILKEFFAV 1005

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN- 423
            R +   RR ++ L++ + +       A  +  + +  +++       T   EL ++ +  
Sbjct: 1006 RLKYYERRKQHQLSELQKQLDKFTNQARFIQMIIDG-KLVVSKKKKATLITELKEKGFKP 1064

Query: 424  ----ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                A  +K               +    ++      +L + +  LT    + +  ++  
Sbjct: 1065 FPKVAEAVKAGETEQVVEEEESSEEANTEMASNAYDYLLGMAIWSLTQERVEKLLRQIGD 1124

Query: 480  LGIEIKECLDILSSR---SRLLGIIKQELLSVKDELDTPRR 517
              +EI E + +         L   I +    +++E    RR
Sbjct: 1125 KEVEIDELIKLSKEEIWRRDLDDFINEWRFQLEEEH---RR 1162


>gi|31745483|gb|AAP55215.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 163

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 205/523 (39%), Gaps = 43/523 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 667  DHSVSKISYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 725

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 726  ELAGHVSGMTA--YQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCASA 783

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 784  RYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSS 842

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D  +               P      G TG       G    
Sbjct: 843  SIPNYNPEDIVDNLKRLMDGEETR-------------PMQPWFRGFTG--EVTDVGGDRF 887

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
               G+          +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 888  KFSGIIK----ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 943

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L        +   L  ++   +++ + N+VA +  G   +  T+  ILK F  +
Sbjct: 944  VHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTY 1003

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   +R +Y L++ +     L   A  V  + +   ++         +    +     
Sbjct: 1004 RLKFYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKAF 1063

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNS 479
              + + +   ++       D      + +        +L + +  LT    + +R ++  
Sbjct: 1064 PKVAEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRRQIGE 1123

Query: 480  LGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
              +E+         DI      L   I +    ++DE    R+
Sbjct: 1124 KEVEVDALIKMSKEDIWKRD--LDDFIAEWRFQLEDEHRRQRK 1164


>gi|31745493|gb|AAP55220.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745495|gb|AAP55221.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745503|gb|AAP55225.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|311352804|gb|ADP93587.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352806|gb|ADP93588.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352808|gb|ADP93589.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352810|gb|ADP93590.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352816|gb|ADP93593.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352822|gb|ADP93596.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352824|gb|ADP93597.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352826|gb|ADP93598.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352828|gb|ADP93599.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352830|gb|ADP93600.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352832|gb|ADP93601.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352834|gb|ADP93602.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352836|gb|ADP93603.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352838|gb|ADP93604.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352840|gb|ADP93605.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352842|gb|ADP93606.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352846|gb|ADP93608.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352852|gb|ADP93611.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352856|gb|ADP93613.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352858|gb|ADP93614.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352862|gb|ADP93616.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352864|gb|ADP93617.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352866|gb|ADP93618.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352868|gb|ADP93619.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352870|gb|ADP93620.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352878|gb|ADP93624.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352880|gb|ADP93625.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352882|gb|ADP93626.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352884|gb|ADP93627.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352886|gb|ADP93628.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352894|gb|ADP93632.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352896|gb|ADP93633.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352898|gb|ADP93634.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352900|gb|ADP93635.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352904|gb|ADP93637.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352906|gb|ADP93638.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352908|gb|ADP93639.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352910|gb|ADP93640.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352912|gb|ADP93641.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352914|gb|ADP93642.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352916|gb|ADP93643.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352918|gb|ADP93644.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352920|gb|ADP93645.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352922|gb|ADP93646.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352924|gb|ADP93647.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352926|gb|ADP93648.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352928|gb|ADP93649.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352930|gb|ADP93650.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352932|gb|ADP93651.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352934|gb|ADP93652.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352936|gb|ADP93653.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352938|gb|ADP93654.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352940|gb|ADP93655.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352942|gb|ADP93656.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352944|gb|ADP93657.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352946|gb|ADP93658.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352948|gb|ADP93659.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352950|gb|ADP93660.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352952|gb|ADP93661.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352954|gb|ADP93662.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352956|gb|ADP93663.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352960|gb|ADP93665.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352962|gb|ADP93666.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352966|gb|ADP93668.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352968|gb|ADP93669.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352970|gb|ADP93670.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352972|gb|ADP93671.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352974|gb|ADP93672.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352978|gb|ADP93674.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352980|gb|ADP93675.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352984|gb|ADP93677.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352988|gb|ADP93679.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352994|gb|ADP93682.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352996|gb|ADP93683.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352998|gb|ADP93684.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353004|gb|ADP93687.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353006|gb|ADP93688.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353008|gb|ADP93689.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353010|gb|ADP93690.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353014|gb|ADP93692.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353016|gb|ADP93693.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353022|gb|ADP93696.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353024|gb|ADP93697.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353026|gb|ADP93698.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353028|gb|ADP93699.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353042|gb|ADP93706.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353044|gb|ADP93707.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353048|gb|ADP93709.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353050|gb|ADP93710.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353052|gb|ADP93711.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353054|gb|ADP93712.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353056|gb|ADP93713.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353058|gb|ADP93714.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353062|gb|ADP93716.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353064|gb|ADP93717.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353066|gb|ADP93718.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353068|gb|ADP93719.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353070|gb|ADP93720.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353072|gb|ADP93721.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353074|gb|ADP93722.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353076|gb|ADP93723.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353078|gb|ADP93724.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353080|gb|ADP93725.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 172/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYIN 231


>gi|31745507|gb|AAP55227.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 192/474 (40%), Gaps = 38/474 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L    +  ++ + K V
Sbjct: 651  DHSVAKITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLHTCFRRNLKKDMKVV 709

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +   +H  G+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 710  ELAGHVSGMTAYHH--GDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASA 767

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  + +   +  + +  + DG   EP V     P +L+NG  GI  G ++
Sbjct: 768  RYIYTRLSPFARKIFNTADEPLLTYNED-DGKKIEPEVFMPVVPMILINGADGIGTGWSS 826

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VV+    ++                P  P      G TG   A    R   
Sbjct: 827  SIPNYNPEDVVNNLKRLMAGQ-------------PTEPMQPWFRGFTGEVVAVGGDRYKF 873

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I +  GD+E + +TE+P +       +K+ E+++ +++   I D RD +    
Sbjct: 874  -----SGIIRECGDKE-VEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTK 927

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+L        +   L  ++   +S+ + N+VA +  G   +  T+  ILK F   
Sbjct: 928  VHFIIQLDEKHMKVALTEGLEEKFKLTKSIATTNLVAFDPEGRITKYATVDDILKEFYVV 987

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR ++ LN  +     L   A  V  + +   +I     P        +     
Sbjct: 988  RLKYYERRKQFQLNDLQRELEKLSNQARFVQMIIDGKLVISKKKKPVLITELKEKGFKPI 1047

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR-------AILELRLARLTGLGRD 471
            + + +   + +D       +G     + + +        +L + +  LT    +
Sbjct: 1048 AKVAEAAKMGEDEPVVEEEEGEEESDDTEAQVLSGSFDYLLGMPMWSLTHERVE 1101


>gi|31745509|gb|AAP55228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 204/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 697  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 755

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG   +   +  +AQ++  S  + L++  G FG+ 
Sbjct: 756  N---DKREVKVAQLAGSVAEMSAYHHGEVTLMMTIVNLAQNFVGSNNINLLQPIGQFGTR 812

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 813  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 871

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 872  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 917

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 918  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 972

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 973  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1032

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1033 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1090

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    S      S   +          IL + L 
Sbjct: 1091 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLW 1150

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1151 SLTKEKVEELIKQRDAKGREVSDLKR--KSPSDLW---KEDLAAFVEELDK 1196


>gi|21327935|dbj|BAC00773.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 199

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/199 (50%), Positives = 139/199 (69%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 1   LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   
Sbjct: 61  GDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALM 217
           +   +  IDNPDI ++ LM
Sbjct: 181 IQATLKYIDNPDITVNQLM 199


>gi|118566967|gb|ABL01794.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|31745489|gb|AAP55218.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745501|gb|AAP55224.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|319826938|gb|ADV74763.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 222

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 129/222 (58%), Positives = 175/222 (78%)

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  +A RYTE R+ K +  +L D+ KDT+D++ NY+GS +EP V+ +R+PN+LVNG  
Sbjct: 1   TGDSSSAMRYTEARMSKISMEILRDITKDTIDYQDNYEGSEREPGVMPSRFPNLLVNGAA 60

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ A
Sbjct: 61  GIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKA 120

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 121 YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLR 180

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           DESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F ++++
Sbjct: 181 DESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIHLL 222


>gi|118566965|gb|ABL01793.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 113/527 (21%), Positives = 215/527 (40%), Gaps = 46/527 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 779  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 896  RYIYTRLSPFARRLFHPADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 955  SIPNYNPEEVVDNLKRLMVGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 1003

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 1004 IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 1053

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 1054 NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 1113

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 1114 VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1172

Query: 424  A------SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                   +        +++         T  +S      +L + L  LT    D +R ++
Sbjct: 1173 PFPKVVGTPEPGEAGDVEEEEDEEEETTTAAVSSDAYDYLLSMPLWSLTQERVDKLRRQI 1232

Query: 478  NSLGIEIKECLDILSS---RSRLLGIIKQELLSVKDELDTPRRTRIV 521
                +E+   + +      R  L   I +    ++DE    RR +I 
Sbjct: 1233 GDKEMEVDALIKLTKEDLWRKDLDEFISEWRFQLEDE--DNRRKKIA 1277


>gi|154243301|gb|ABS71823.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 103/165 (62%), Positives = 131/165 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SL  +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRMAQPFSLCYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 110/526 (20%), Positives = 216/526 (41%), Gaps = 44/526 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 779  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 896  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVVD    ++       + L+ +   P F      +  +G +       G I
Sbjct: 955  SIPNYNPEEVVDNLKRLMVG-----EELVPM--KPWFRGFKGEVSGSGDR---YKFSGII 1004

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 + +E          +TE+P +       +K+ E+++ +++   I D +D +    
Sbjct: 1005 KQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 1054

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 1055 VHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAV 1114

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R +YLL++ + +   L   A  V  + +   ++          +EL ++ +  
Sbjct: 1115 RIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDG-ELVISKKKKAVLIQELQEKGFKP 1173

Query: 425  ------SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                  +        +++         T  +S      +L + L  LT    D +R ++ 
Sbjct: 1174 FPKVVGTPEPGEAGDVEEEEDEEEETTTAAVSSDAYDYLLSMPLWSLTQERVDKLRRQIG 1233

Query: 479  SLGIEIKECLDILSS---RSRLLGIIKQELLSVKDELDTPRRTRIV 521
               +E+   + +      R  L   I +    ++DE    RR +I 
Sbjct: 1234 DKEMEVDALIKLTKEDLWRKDLDEFISEWRFQLEDE--DNRRKKIA 1277


>gi|330837756|ref|YP_004412397.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749659|gb|AEC03015.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
          Length = 667

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 149/531 (28%), Positives = 237/531 (44%), Gaps = 56/531 (10%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               +++YL YA  VI  RAIPD+ DGLKPV RRI+  + +M    + K+ K A + G  
Sbjct: 5   ETIYRHNYLEYASYVIKERAIPDVVDGLKPVQRRIIHTLFEMD---DGKFHKVANVVGHS 61

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-GSVDGDPPAAERYTECRLQKAAH 140
           M +YHPHG+A+IY+AL  M    +   L IE QGNF  ++ GD  AA RY ECR+   A 
Sbjct: 62  M-RYHPHGDASIYEALVNM----ANFDLFIERQGNFGNALTGDRAAAGRYIECRIFPFAK 116

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L     +  ++  +YDG  +EPV   A+ P VL+ G  GIAVGM+T +  HN  EV+D
Sbjct: 117 RVL--YNPELTEYVDSYDGRNREPVAFPAKIPVVLIQGAEGIAVGMSTKMLPHNAIEVLD 174

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              +V+             +  PD PTG ++         Y  G GSI +R        +
Sbjct: 175 AMKSVLKGES--------FMLFPDLPTGGIL-----DVQEYGDGTGSISVRAK----LDT 217

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            D ++IV+TE+PY V   AM+E I    R+ R+   A     SD+    + + L RG  +
Sbjct: 218 SDPKRIVITELPYGVTSEAMIESIEAAARKGRLKVAAINDYTSDKA--NIEVCLARGTYS 275

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             I + LY +TS +   SVN + +    PE   +  I++  V           + LL+  
Sbjct: 276 KDIEDALYAHTSCEQKISVNALVIKDNMPEIMPVSAIVRFHV-----------RQLLDVL 324

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           +    +  G      +   + RI             + +R         +   +      
Sbjct: 325 KAELELEKGHLFDTLHARTLERIF--------VEERIYKRIEQKRSADAVEAAVVSGFEP 376

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            GS+    L       +L++ + R++    +  R E+ ++  ++K+    LS    L   
Sbjct: 377 YGSELIRPLVHDDVERLLKIPIRRISLFDIEKNRAEIENIHEKLKDIEWKLSH---LTDY 433

Query: 501 IKQELLSVKDELD---TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
               L  +K  L      RR+ I +  L ++ +    R+  +      GY+
Sbjct: 434 ALGYLDELKTLLGVKEHARRSSIKQFEL-VDAKSVAQRDLTLRYDPKTGYL 483


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 214/534 (40%), Gaps = 48/534 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +    S++ TD +    + +++     R+IP + DGLKP  R++++   +  +  ++K V
Sbjct: 774  DHSTKSITYTDFVNKELILFSM-ADNMRSIPSVVDGLKPGQRKVIYACFKRNLVKDQKVV 832

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 833  ELAGYISEQTSYHH--GEVSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASP 890

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +   L +  ++ +   DG   EP V     P +L NG  GI  G +T
Sbjct: 891  RYIHTRLSPFARKIFSPLDEPNLEPQYE-DGKRIEPKVYAPIIPMILCNGADGIGTGWST 949

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP ++  ++V+     +   D               P      G  G        R   
Sbjct: 950  SIPNYHPIDIVNNLKRRMGRLDPSNPEDAAF-----QPMMPWFRGWKGTPEQSEKDR--Y 1002

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLRDESDRQG 307
               G+  I++ +G+   ++VTE+P ++       K+ E++   +  V I D ++ +D + 
Sbjct: 1003 KFNGICEIDERTGE---VIVTELPIRMWTDDFKAKLEEVISGTKGPVWIKDYKEFNDHKN 1059

Query: 308  YRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               VI++    + D++ + L   ++ +   +  ++      G   +   +  IL+ F  +
Sbjct: 1060 VHFVIQMDDKHTKDILADGLLERFKLSKQIATSNLVAFDTRGQIRKYEKVEDILEEFYNY 1119

Query: 365  REEVVVRRTKYLL-----------NKARDRAHVLVG-LAIAVANLDEVVRIIRFSPNPET 412
            R ++  +R K+ L            +AR    ++ G L +A      +V  +        
Sbjct: 1120 RLDMYAQRKKHWLGVYHSDFRKLSEQARFIREIIEGKLVVAKKRKQVLVEELAKRKYEAF 1179

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             + +       ++D     +  D+      ++G  YL  +   ++   RL RL     ++
Sbjct: 1180 PKNKDKNVKKKSTDEDMEGNDEDEEDTDEQTNGYDYLLSMPIWSLTYERLERLERQ-IEN 1238

Query: 473  IRNELNSLGI-------------EIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             + E ++L                + E  + ++  + +   I++    V  ++ 
Sbjct: 1239 KKAEHDALLALGEKDLWIQDLDDFVAEWENQMALDAEIQTNIRRLGRRVSKKIG 1292


>gi|311352812|gb|ADP93591.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352814|gb|ADP93592.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352818|gb|ADP93594.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352820|gb|ADP93595.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352844|gb|ADP93607.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352848|gb|ADP93609.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352850|gb|ADP93610.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352860|gb|ADP93615.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352872|gb|ADP93621.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352874|gb|ADP93622.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352876|gb|ADP93623.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352888|gb|ADP93629.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352890|gb|ADP93630.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352892|gb|ADP93631.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352902|gb|ADP93636.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352958|gb|ADP93664.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352964|gb|ADP93667.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352976|gb|ADP93673.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352982|gb|ADP93676.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352986|gb|ADP93678.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352990|gb|ADP93680.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352992|gb|ADP93681.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353000|gb|ADP93685.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353002|gb|ADP93686.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353012|gb|ADP93691.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353030|gb|ADP93700.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353032|gb|ADP93701.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353034|gb|ADP93702.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353036|gb|ADP93703.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353038|gb|ADP93704.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353040|gb|ADP93705.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353046|gb|ADP93708.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353060|gb|ADP93715.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 172/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 231


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 114/523 (21%), Positives = 207/523 (39%), Gaps = 43/523 (8%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +  D    K    ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 714  HGLPEDYLYGKDTNYLTYNDFINKELVLFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 772

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG A++   +  +AQ++  S  L L++  G FG+ 
Sbjct: 773  N---DKREVKGAQLAGSVAEMSSYHHGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTR 829

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 830  LHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRFLYD-DNQRVEPEWYMPIIPMVLING 888

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +  IP  ++ E V+    ++D  +            P  P+     G     
Sbjct: 889  AEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE----------PLPMLPSYKNFKGTID-- 936

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G    VI G   I     D   I +TE+P +       E++ E +    EK    
Sbjct: 937  ---ELGPNQYVISGEVSI----LDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPL 989

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D ++       + V+++     A+     L++   LQ+  + N + L  +     +  
Sbjct: 990  ITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYE 1049

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   ILK F   R      R ++L+      +  L   A  +    +   +I   P  + 
Sbjct: 1050 SPQDILKEFFELRLRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKP-KKE 1108

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGR 470
              + L+QR + +  +K   +L +         G      +      +L + L  LT   +
Sbjct: 1109 LIQVLIQRGYESDPVKAWKELQNKEEEEGDESGEESAAATGPDFNYLLNMPLWYLTKEKK 1168

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            D++  + ++   E+++      S S L    K++L +  +ELD
Sbjct: 1169 DELCKQRDNKDKELEDLKH--KSPSDLW---KEDLAAFVEELD 1206


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/533 (18%), Positives = 201/533 (37%), Gaps = 46/533 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +  +D +    + +++     R+IP + DG KP  R++++   +  +  +KK V
Sbjct: 760  DHSAKQICYSDFINRELILFSM-ADNMRSIPSVLDGFKPGQRKVIYACFKRNLIKDKKVV 818

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 819  ELAGYVSEQTAYHH--GEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGSDAASP 876

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RYT  RL   A  +   + +  +      DG   EP+V     P VLVNG  GI  G ++
Sbjct: 877  RYTFTRLSPFARKIFHPMDEPNL-LHHYEDGKKIEPMVYAPILPMVLVNGADGIGTGWSS 935

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            NIP ++  ++V      +   D +          P         G  G   A    R   
Sbjct: 936  NIPNYHPADIVQNLRRRMGRLDENDTE-----EKPFETMMPWFRGWKGTPEAAGPDRYKF 990

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQG 307
                 ++ +K +    +IV+TE+P +V       K+ +++  +     I D ++ +D   
Sbjct: 991  NGVAYANEQKDN----EIVITELPIRVWTDDFKAKLEKVISGELGPSWIKDYKEFNDHST 1046

Query: 308  YRVVIELKRGASADVILNQ-LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
                I +       V+    L R+   + + + N+VA +  G   +   +  IL+ F  +
Sbjct: 1047 VHFEIAVDDKHMGKVMEEGILERFKLTKQVATSNLVAFDTSGRIRKYEKVEEILEEFYQY 1106

Query: 365  REEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
            R ++   R K+ L           N+AR    ++    +       V+       + E  
Sbjct: 1107 RLDMYTDRKKHWLGVYHADLRKLQNQARFIKEIIDNKLVVGKKKKAVLVQELRDRDYEAF 1166

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                 ++     + +D  +   +     G+    YL  +   ++   RL +L     +  
Sbjct: 1167 PPRGDKKKTADEEEEDDDNQDVEGDSEGGARDYDYLLSMPIWSLTAERLEKL-KQAIEKK 1225

Query: 474  RNELNSLGI-------------EIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            + E   L                + E  + L+  + +   I++    V  ++ 
Sbjct: 1226 KAEHEELLALSEKDLWCRDLDDFMTEWENQLAVDAEIKTNIRRLGRRVSKKIG 1278


>gi|118566969|gb|ABL01795.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 101/473 (21%), Positives = 194/473 (41%), Gaps = 35/473 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   ++ V   KK +
Sbjct: 781  DHTTEEITYTDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTCFKLNV---KKDM 836

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A +SG V+G   + HG+A++   +  +AQ++  S  +  +E  GNFGS    G   A+
Sbjct: 837  KVAELSGYVLGLTAYQHGDASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAAS 896

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL   A  +  +     + +  + DG   EP       P +L+NG  GI  G +
Sbjct: 897  PRYIYTRLSPFARRIFHEADGPLLTYNVD-DGQVIEPETYFPVVPMILINGADGIGTGWS 955

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP +N  E+V     ++             +  P  P      G TG   +    R  
Sbjct: 956  TSIPNYNPEEIVANIKRLM-------------VGEPVVPMQPWFRGFTGEVVSMGGERYK 1002

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
               R       +     +I +TE+P +       +++ E+++ ++I   I D +D +   
Sbjct: 1003 FSGR------FSQIGDNEIEITELPIRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHT 1056

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                VI+L    +   I   L  +    ++L + N+VA +  G   +  +   IL+ F +
Sbjct: 1057 KVHFVIQLDEKHAKKTIAEGLEEKLKLTKTLATSNLVAFDSEGRITKYESPEHILQEFYS 1116

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++ L++ +     L   A  V  + +   +I   P      +EL ++ + 
Sbjct: 1117 VRIKLYEKRKQHQLSQMQKDLEKLSNQARFVQMIIDGKLVISKKP-KAQLVQELKEKGFK 1175

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            A           + +  +  D         T  +       L    +  + +E
Sbjct: 1176 AIAKVSDAAKQGEKAPVVNRDDEESSDSEDTE-LAANSFDYLLEEWKFQLEDE 1227


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 110/526 (20%), Positives = 209/526 (39%), Gaps = 44/526 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 779  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRRDIKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 896  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVVD    ++   ++              P      G  G      TG G  
Sbjct: 955  SIPNYNPEEVVDNLKRLMAGEEL-------------VPMKPWFRGFKG----EVTGSGD- 996

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ +TE+P +       +K+ E+++ +++   I D +D +    
Sbjct: 997  --RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 1054

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 1055 VHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAV 1114

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ +  
Sbjct: 1115 RIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFKP 1173

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT------RAILELRLARLTGLGRDDIRNELN 478
                       ++      +     +            +L + L  LT    D +R ++ 
Sbjct: 1174 FPKVVGTPEPGEAGDIEEEEDEEEETASAAVSSDAYDYLLSMPLWSLTQERVDKLRRQIG 1233

Query: 479  SLGIEIKECLDILSS---RSRLLGIIKQELLSVKDELDTPRRTRIV 521
               +E+   + +      R  L   I +    ++DE    RR +I 
Sbjct: 1234 DKEMEVDTLIKLTKEDLWRKDLDEFISEWRFQLEDE--ETRRKKIA 1277


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 115/544 (21%), Positives = 220/544 (40%), Gaps = 62/544 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  +  +   ++    +S    +    + ++ N+   R+IP + DGLKP  R++LF   +
Sbjct: 698  EANLPEEYLYQEDTKEISYKSFIDKELILFS-NMDNERSIPSMVDGLKPGQRKVLFTCFK 756

Query: 63   MGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNF 117
                 +K+ VK A+++G V     + HG  ++   +  +A ++    ++ +LL  GQ   
Sbjct: 757  RN---DKREVKVAQLAGSVAEHSAYHHGEVSLMSTIINLAHNFVGSNNINILLPIGQFGT 813

Query: 118  GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
              + G   A+ RY    L      +     +  ++F    D    EP   C   P VLVN
Sbjct: 814  RLLGGRDAASARYIFTMLSPVTRAMFCTDDEPNLNFLFE-DNQKIEPFWYCPILPLVLVN 872

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +T +P H+   VV     ++++     + L+     P +P      G    
Sbjct: 873  GCEGIGTGWSTKVPNHDPRIVVKNLKRLMND-----EELL-----PMYPWYKNFQGEIST 922

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIV 294
             NA          R V   E  S D   + +TE+P         E + E +    + +  
Sbjct: 923  LNA---------SRFVCFGEIASVDDTTLEITELPIGTWTQNYKESVLEPMLYGADGKQP 973

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPER 351
             I D ++       R +I + +   A+   + +++Y  LQ++ + + + L   +G   + 
Sbjct: 974  VIQDFKEYHTDTTVRFIIRMSKEKMAEANAHGIHKYFKLQTIINSSSMVLFDEHGCLKKF 1033

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNP 410
             T   IL +F   R ++ V+R  YL      +A+ L   A   +  ++ V++I       
Sbjct: 1034 ETAKDILISFYKVRLDMYVKRKAYLEGHLEAQANRLKAQARFIMEKIEGVIKIENMKK-- 1091

Query: 411  ETARRELMQRSWNASDIK------DLIDLIDDSSYTIGSDGTMYLSEVQT---------- 454
            +    +L++R + A  +K      ++  L     +   +D    + E             
Sbjct: 1092 KHIVEQLVERGYPADPVKKWKEAENMRKLKAMEEFVDETDEANEVEETGANEEDVCLSDY 1151

Query: 455  RAILELRLARLTGLGRDDI-------RNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
              +L + L RL+   +D +        +ELNSL  +  + L I     + L ++ +  LS
Sbjct: 1152 DYLLSMALIRLSEEEKDKLLKDRDVKIDELNSLKAKTPKMLWI-EDLDKFLDVLDKHELS 1210

Query: 508  VKDE 511
             K+E
Sbjct: 1211 EKEE 1214


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/492 (19%), Positives = 182/492 (36%), Gaps = 33/492 (6%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  +  +KK V
Sbjct: 781  DHSTKEITYTDFVSKELILFSM-ADNLRSIPSVIDGLKPGQRKVLYACFKRNLIKDKKVV 839

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G A++   +  +AQ++  S  + ++E  GNFGS    G   A+ 
Sbjct: 840  ELAGYVSEHTAYHH--GEASLQQTIIGLAQNFVGSNNINILEPSGNFGSRLAGGSDAASP 897

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RYT  RL   A  +   L +  +  +   DG   EP V     P VLVNG  GI  G +T
Sbjct: 898  RYTFTRLAPFAKKIFSPLDEACLKHQYE-DGKRIEPEVYSPILPMVLVNGADGIGTGWST 956

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP ++  ++V      +   D D          P         G  G   A    R   
Sbjct: 957  TIPNYHPADIVKNLKRRMGRLDEDGAE-----EKPFETMTPWFRGWKGSPEAAGPDRYKF 1011

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLRDESDRQG 307
                     +   +  +I++TE+P ++       K+ +++        I D ++ +D + 
Sbjct: 1012 NGIAS----QNDQNPNEIIITELPIRMWTDDFKAKLEKVISGNDGPTWIKDYKEFNDHKT 1067

Query: 308  YRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                I +       ++   L   ++ T   +  ++      G   +   +  IL+ +   
Sbjct: 1068 VHFEIMVDEKHLPKILEEGLLERFKLTKQVATSNLVAFDTRGQIRKYEKVEDILEEYYVH 1127

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSW 422
            R ++   R +Y L    +       L      + E++   +I           EL  R +
Sbjct: 1128 RLQMYHDRKQYWLQVYDNDLEK---LKNQYRFIKEIIDGELIVGRKKKAVLVSELRDRKY 1184

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-------RAILELRLARLTGLGRDDIRN 475
             A           D       +      +  T         +L + +  LT    D +++
Sbjct: 1185 KAFPPGGQKQKTADDEPDESDNENDDDDDKATAAGAHDYDYLLSMPIWSLTQERLDKLKD 1244

Query: 476  ELNSLGIEIKEC 487
             +N    +I+  
Sbjct: 1245 AINKKKDDIEGL 1256


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 102/530 (19%), Positives = 201/530 (37%), Gaps = 55/530 (10%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            ++  + +    + +++     R+IP + DGLKP  R++++   +  +  + K V+ A   
Sbjct: 806  LTYDNFINKELILFSM-ADNMRSIPSVIDGLKPGQRKVMYACFKRNLINDMKVVELAGYV 864

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECR 134
             ++   +H  G A++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY   R
Sbjct: 865  SQISAYHH--GEASMQMTIVGLAQNFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIFTR 922

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L   A  +   L    +++  + DG   EPV      P VL+NG  GI  G +TNIP ++
Sbjct: 923  LSPFARRVYSALDDPVLEYNID-DGKSIEPVTYFPVVPMVLINGAEGIGTGWSTNIPNYH 981

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR----GSIVI 250
              EVV+     +   D   +        P         G  G        R    G I  
Sbjct: 982  PVEVVNNLKRRMGRLDDSGEE------KPFETMMPWFRGWKGTPEPAGPDRYKFNGIIRE 1035

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYR 309
             G + +E          +TE+P ++       K+ E+++ +++   I D ++ +D +   
Sbjct: 1036 TGDTEVE----------ITELPIRMWTDDFKAKLEEVIKAEKVPSFIKDYKEFNDHKNVH 1085

Query: 310  VVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFRE 366
            ++I++      + +   L  ++   +++ + N+VA +  G   +   +  IL+ F   R 
Sbjct: 1086 MIIQMDDKHMKEALKEGLAEKFKLNKTVATSNLVAFDHRGQIRKYDKVEDILEEFYEQRL 1145

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP---ETARRELMQRSWN 423
            ++   R  + + K       L   A  V  + E   I+     P      R+   +    
Sbjct: 1146 KMYTVRKAHWMKKLNVEYRKLTNQARFVTEIIENKLIVSKKKKPVLVAELRKRGYEGFPK 1205

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-------RNE 476
             +D K   +  D                     +L L +  LT    D +       ++E
Sbjct: 1206 ITDAKKAGEADDVVENEEEVTADEDAGARDYDYLLGLPIWSLTQERVDKLNKQMYDKKDE 1265

Query: 477  L-------------NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +               L   + E  D L   + +   I+       +++ 
Sbjct: 1266 IDTLDRLSEKDLWCEDLDAFVLEWEDQLRQDAEITKTIRNTNRRRSNKIG 1315


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/506 (17%), Positives = 186/506 (36%), Gaps = 37/506 (7%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              +  +     +S  D +    + +++     R+IP + DGLKP  R++++   +  ++ 
Sbjct: 792  PGQHLDLTTQEISYDDFVNKELILFSM-ADNLRSIPSVIDGLKPGQRKVMYTCFRRNIKK 850

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
            + K +  A          H  G +++   +  +AQ++  +  +  +E  GNFGS    G 
Sbjct: 851  DVKVIDLAGSVSGTTDYAH--GESSMQGTIVGLAQNFVGTNNINYLEPSGNFGSRLKGGA 908

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A+ RY   RL   A  +        + +  + DG   EP +     P +L+NG  GI 
Sbjct: 909  DAASARYIYTRLSPFARRIFHAHDDALLKYGES-DGKPIEPEMYIPVLPTILINGSSGIG 967

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYA 242
             G ++ IP  N  E++D     +       + +      P  P      GRT  +     
Sbjct: 968  TGWSSEIPNFNPMEIIDNIRIRMK-EGATKEDMR-----PMVPWYKGFTGRTEELGENRY 1021

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRD 301
               G+I   G + +E          VTE+P +       EK+ E+++  +    I D  D
Sbjct: 1022 QFTGTIRQTGDNEVE----------VTELPVRYWTQDFKEKLEEIIKADKTPSFIKDYID 1071

Query: 302  ESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             +       +I+++    A  +   L ++++    QS  ++     +G   +  T++ I+
Sbjct: 1072 YNTPDRVHFIIKMEDKYMAAALAKGLEEMFKLFKPQSTTNLVAFDAHGRIHKYATVLDII 1131

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            + F   R     +R ++ L         +   A  +  + +   ++          +EL 
Sbjct: 1132 EEFYHVRLRYYEKRKQHQLEVMHKELSKMTNQAKFIQMIIDGKLVVSKKKKLALV-QELK 1190

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDI 473
            +  +      D      +       +     +E          +L + +  LT    + +
Sbjct: 1191 KLGFTPIPKVDDAKKAGEIDDVQEDEEDTDETEAGASASDYDYLLGMAIWSLTQERVEKL 1250

Query: 474  RNELNSLGIEIKECLDILSSRSRLLG 499
              ++     EI   + +  S   +  
Sbjct: 1251 LKQIGEKEEEIDTLIKL--SPKDIWN 1274


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/529 (19%), Positives = 197/529 (37%), Gaps = 57/529 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +   D +    + +++     R+IP   DGLKP  R++++ M         K  
Sbjct: 759  DHNTDRIPYADFINKELILFSM-ADNLRSIPSAIDGLKPGQRKVMYVMFDRKSNSELKVN 817

Query: 73   KCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
                + G V+G+  + HG AA+   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 818  T---LVGNVLGQAAYHHGEAALSMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAAS 874

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L K A  L        +D+  + DG   EP       P VL+NG  GI  G +
Sbjct: 875  GRYIFTALPKIARALFPATDDALLDYLED-DGQKVEPHWYIPVVPQVLLNGAEGIGTGWS 933

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T++P +N  E+V      +   D+              P      G  G    +  GR  
Sbjct: 934  TSVPNYNPHEIVANLRRRMAGEDV-------------VPMKPWYRGFNGDVEEFGPGRFK 980

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDR 305
            I  R       T  D +   +TE+P +   +   E + E +   +K    I D ++    
Sbjct: 981  ISGR------VTQIDEKTYEITELPIRTWTSNYKELLEERIVSSDKIPATIKDYKEYHTE 1034

Query: 306  QGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
                 ++EL     A++    +   ++ +   S  ++ +   +G   +  +   IL+ F 
Sbjct: 1035 STVNFIVELTAKGQAEIADKGVEAFFKLSCQISTTNMVLFDQDGKIKKYTSAEEILEEFY 1094

Query: 363  AFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVANLDEVV----RIIRFS 407
              R     +R +YL+           N+AR    ++    +        +    R   F 
Sbjct: 1095 LLRLSYYQKRKEYLVDQLKLMYDKLSNQARFVQMIISRQLVVSNRKRADIVAELRQKDFR 1154

Query: 408  PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
            P P+  +  +     +   I D     D     + +     L++ +   +L+ R  +   
Sbjct: 1155 PFPKQGKASIAAEPEDDEAIDDEDISADSDFDYLLNMAIYNLTKEKVDKLLKERDHKEEE 1214

Query: 468  LGR------DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
            L         ++ +E   L   I+   ++L+   R L  +  ++   K 
Sbjct: 1215 LKILIGRSPQNLWDE--DLTKFIELWEEMLAEDDRRLKDVVTKVKKGKQ 1261


>gi|298104538|gb|ADI55009.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 160

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/160 (61%), Positives = 128/160 (80%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL 
Sbjct: 61  HGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLD 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           K+TVD+ PNYDG+   P V+  + P +LVNG  GIAVGMA
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 160


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/537 (21%), Positives = 211/537 (39%), Gaps = 63/537 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 1002 HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCCKR 1060

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +++ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 1061 N---DRREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 1117

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 1118 LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 1176

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 1177 AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFRGT---- 1222

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 1223 -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 1277

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 1278 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1337

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T+  ILK F   R      R ++L+           N+AR     + G           L
Sbjct: 1338 TVQDILKEFFDLRLNYYSLRKEWLMGMLGAESTKLNNQARFILEKIQGKITIENRSKRDL 1397

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +++    +  +P  A +E  ++   A++  +  +  DDSS   G+      +      I
Sbjct: 1398 IQMLVQRGYESDPVKAWKEAQEK---AAEEDETQNQHDDSSSDSGTTTGPDFN-----YI 1449

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
            L + L  LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1450 LNMSLWCLTKEKVEELIKQRDAKGRELNDLKR--KSPSDLW---KEDLAAFVEELDK 1501


>gi|21327937|dbj|BAC00774.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 177

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 136/177 (76%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+  IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLPIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD+S R  L++GQGNFGS+DGD  AA RYTE R+ K    LL D+ KDT+DF  NYDG
Sbjct: 61  MAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           + +EP VL AR+PN+L NG  GIAVGMATNIP HNL E+++G +++  NPDI +  L
Sbjct: 121 NEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL 177


>gi|301014718|gb|ADK47158.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 166

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/166 (63%), Positives = 132/166 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  IVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           YDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC
Sbjct: 121 YDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 166


>gi|117654333|gb|ABK55597.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 196

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 152/196 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKEXIIVT 180

Query: 270 EIPYQVNKAAMLEKIA 285
           E+P QV KA ++E IA
Sbjct: 181 ELPXQVXKAKLIEXIA 196


>gi|329124299|gb|AEB72027.1| DNA gyrase subunit A [Aeromonas sp. A1(2011)]
          Length = 158

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/158 (61%), Positives = 126/158 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYADYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL 
Sbjct: 61  HGDVAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLD 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVG
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 158


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 114/523 (21%), Positives = 207/523 (39%), Gaps = 43/523 (8%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +  D    K    ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 679  HGLPEDYLYGKDTNYLTYNDFINKELVLFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 737

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG A++   +  +AQ++  S  L L++  G FG+ 
Sbjct: 738  N---DKREVKGAQLAGSVAEMSSYHHGEASLMMTIINLAQNFVGSNNLNLLQPIGQFGTR 794

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 795  LHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRFLYD-DNQRVEPEWYMPIIPMVLING 853

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +  IP  ++ E V+    ++D  +            P  P+     G     
Sbjct: 854  AEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE----------PLPMLPSYKNFKGTID-- 901

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G    VI G   I     D   I +TE+P +       E++ E +    EK    
Sbjct: 902  ---ELGPNQYVISGEVSI----LDSTTIEITELPVRTWTQTYKEQVLEPMLNGTEKTPPL 954

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D ++       + V+++     A+     L++   LQ+  + N + L  +     +  
Sbjct: 955  ITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYE 1014

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   ILK F   R      R ++L+      +  L   A  +    +   +I   P  + 
Sbjct: 1015 SPQDILKEFFELRLRYYGLRKEWLIGMLGAESAKLNNQARFILEKIDGKIVIENKP-KKE 1073

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGR 470
              + L+QR + +  +K   +L +         G      +      +L + L  LT   +
Sbjct: 1074 LIQVLIQRGYESDPVKAWKELQNKEEEEGDESGEESAAATGPDFNYLLNMPLWYLTKEKK 1133

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            D++  + ++   E+++      S S L    K++L +  +ELD
Sbjct: 1134 DELCKQRDNKDKELEDLKH--KSPSDLW---KEDLAAFVEELD 1171


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 211/549 (38%), Gaps = 79/549 (14%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 779  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 896  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 955  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 1003

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 1004 IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 1053

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 1054 DVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 1113

Query: 364  FREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LDEVVRIIRFSP 408
             R ++  +R +YLL           N+AR    ++ G  +        L + ++   F P
Sbjct: 1114 VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKP 1173

Query: 409  NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             P+            A D+++  D  ++++    S             +L + L  LT  
Sbjct: 1174 FPKVVGTP---EPGEAGDVEEEEDEEEETTTAAASSDAY-------DYLLSMPLWSLTQE 1223

Query: 469  GRDDIRNEL--------------------NSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
              D +R ++                      L   I E    L         I      +
Sbjct: 1224 RVDKLRRQIGDKEMEVDALIKLSKEDLWRKDLDEFISEWRFQLEDEENRRKKIASRGRRL 1283

Query: 509  KDELDTPRR 517
              ++ T  R
Sbjct: 1284 SAKVKTGSR 1292


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 103/530 (19%), Positives = 202/530 (38%), Gaps = 45/530 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ +D +    + +++     R+IP + DGLKP  R+++F   +  +  +KK V
Sbjct: 787  DHSTKQITYSDFVNKELILFSM-ADNMRSIPSMIDGLKPGQRKVIFACFKQNLVKDKKVV 845

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A    E    +H  G A++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 846  ELAGYVSEKAAYHH--GEASLQQTIIGLAQNYVGSNNVNCLEPSGNFGSRLQGGSDAASA 903

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  + + L +  +  + + DG   EP V     P VLVNG  GI  G +T
Sbjct: 904  RYIHTRLSPFARRVFNPLDEPVLQHQVD-DGKAIEPKVYAPVIPMVLVNGADGIGTGWST 962

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP ++  E+V      +   D+  +   E       P      G  G        R   
Sbjct: 963  SIPNYHPEEIVRNIKRRMGRLDVPEEQEFE-------PMTPWWRGWKGTPEPEDASRIRF 1015

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQG 307
               G++++     +  ++V+TE+P ++       ++ E++R ++    I D ++ +D + 
Sbjct: 1016 KFNGIANL--DDKNPNEVVITELPIRMWTDDFKARLEEIIRAEKTPSWIKDYKEFNDHKN 1073

Query: 308  YRVVIELKRGASADV-----ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
               +I+L      +      +L + ++     ++ ++     NG   +   +  IL+ F 
Sbjct: 1074 VHFIIQLDEKHMKEFRDSPNLLLERFKLQKNVAITNLVAFDTNGQIRKYDKVEDILEEFY 1133

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQR 420
             +R  V   R  + L            L      + E++   ++          +EL QR
Sbjct: 1134 HYRLNVYAARKAHWLRVFDAD---YRKLTNQYRFISEIIDGKLVVSKKKKSVLVQELRQR 1190

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSE--VQTRAILELRLARLT--GLGRDDIRNE 476
             +      +      D       +      E   Q  AI  L   RL       +  + E
Sbjct: 1191 KYEPFPKGETGKKAQDEEEEFEDEEEDERQETNKQQMAIWSLTHERLERLKKQLEAKKAE 1250

Query: 477  LNSLG-------------IEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             + L                + E  + L   + +   I++    V  ++ 
Sbjct: 1251 FDELNSKSEKDLWCKDLDDFVMEWENQLKLDAEIQTNIRRMGRRVSRKIG 1300


>gi|313633447|gb|EFS00274.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 404

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/465 (22%), Positives = 199/465 (42%), Gaps = 66/465 (14%)

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           SE Q  AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K EL  +K
Sbjct: 1   SEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIK 60

Query: 510 DELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            +  TPRRT +   + +  ++ E  +  ED++V+V+  GYVKR     Y A         
Sbjct: 61  KKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNG-----K 115

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQ 626
            + M++ D    +  +++  ++L F+S G      V  LP    +  G  + ++ S L+ 
Sbjct: 116 ELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSA 175

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDSRDEIL 685
           GE I +++     ++       +F TK+G  +++ ++++     S  +  +KL   DE+L
Sbjct: 176 GEEIRSVIDI---QTFTEEKRFLFVTKNGMTKQSLITNYKPQRYSKSMMGIKLKDDDELL 232

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           SV       DI L TK G  +R+PI+ I     R + GV+ I+L + D VI   ++  +D
Sbjct: 233 SVHLIDGTEDIFLATKNGYGLRYPIAEIPESGARTA-GVKAINLKQDDTVIGGVVLTQSD 291

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                               + IL  ++
Sbjct: 292 ---------------------------------------------------NRHILLATQ 300

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+  + +F   +R+ +G+      K N     + +   N+ D + + +    ++ V
Sbjct: 301 RGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLANNKDHLFIETKTEQIVEV 359

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            V  +R+  R + G  +     +   +S+  +   EI D  +S +
Sbjct: 360 DVANLRVTDRYSNGSFVLDETMEGEPISIW-LDIPEIKDTTDSKD 403


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/540 (19%), Positives = 203/540 (37%), Gaps = 60/540 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ +D +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 776  DHSTEQITYSDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTMFKRNVRKDIKVV 834

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 835  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 892

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +      DG   EP       P +L+NG  GI  G +T
Sbjct: 893  RYIYTRLSPFARRLFHPADEPLL-VNNTDDGKVIEPETYVPVVPLILINGADGIGTGWST 951

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VV     ++   ++              P      G  G      TG G  
Sbjct: 952  SIPNYNPEDVVANLKRLMAGEEL-------------VPMKPWFRGFKG----EVTGSGD- 993

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ +TE+P +       +++ E+++  ++   I D +D +    
Sbjct: 994  --RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTN 1051

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I++        +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 1052 VHFIIQMDEKHMKKALEEGLEEKFKLIKPIATSNMVAFDAEGRITRYETPEDILQAFYAV 1111

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-- 422
            R ++  RR ++LL++ + +   L   A  V  + +   +I          +EL  +++  
Sbjct: 1112 RIKLYERRKQHLLSQLQSQLDKLSNQARFVQMIIDGKLVI-SKKKKTILIQELKDKAFKP 1170

Query: 423  -----NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                 + +   ++ D   +       +    LS      +L + L  LT    + +R ++
Sbjct: 1171 FPKVADTAKSDEVDDEEGEEDEEEEGNSDAVLSSDAYDYLLSMPLWSLTQERVEKLRRQI 1230

Query: 478  --------------------NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
                                  L   I E    L         I      +  ++ T  R
Sbjct: 1231 GDKEMEVDALIKLSKEDIWRKDLDDFIAEWRFQLEDEENRRKKIAGRGRRLSAKVKTGSR 1290


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
            98AG31]
          Length = 1259

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 94/498 (18%), Positives = 181/498 (36%), Gaps = 40/498 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  ++ +S T+ +    + +++     R+IP + DG KP  R++LF   +  +
Sbjct: 761  FEPGTHLDHNVSQISYTEFINKELILFSM-ADNIRSIPSMVDGFKPGQRKVLFACFKRKL 819

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
               K  +K A++ G       + HG  ++   +  +AQ++  S  + ++   G FG+   
Sbjct: 820  ---KAEIKVAQLGGYCAEHSAYHHGEQSLTQTIVALAQNFVGSNNINVLSPNGQFGTRAN 876

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    ++K    +        +++  N DG+  EP       P VLVNG  
Sbjct: 877  GGKDAASARYIFTNIEKITRAIFPPQDDHVLNYL-NDDGAQIEPEWYVPVLPMVLVNGSS 935

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +++IP +N  ++V+     + +              P  P      G TG    
Sbjct: 936  GIGTGWSSDIPNYNPMDIVENLRRKLSDE-------------PLEPIYPWFRGFTGHITP 982

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIAD 298
             A G+  +        E    D + + +TE+P +V      E +   +   +K    + D
Sbjct: 983  EAPGKFKVTG------EWNQPDEDTVEITELPIRVWNLTYKELLEAWITSTDKVPALVKD 1036

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLI 355
             R+         +I+L       +  + L   ++ T   S  ++      G   +  T  
Sbjct: 1037 YREYHTETTVHFIIQLTDKGKEAIKKDGLEKVFKLTGNVSTTNMVCFDSFGKIKKYSTPE 1096

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL+ F   R E   +R ++L+         L   A  V  + E   II           
Sbjct: 1097 EILEDFYDIRLEYYQKRKEFLVQDLTTTYERLSNQARFVLMIIEKKLIINNRK-KAEVVI 1155

Query: 416  ELMQRSWNASDIKDLIDLIDDS-----SYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            +L +  +     K       D            +     S      +L + ++RLT    
Sbjct: 1156 DLRKLDFRPFPRKPKPKTAGDPDQVGEDDQEEEEHDEVESAGDYDYLLSMAISRLTAEQV 1215

Query: 471  DDIRNELNSLGIEIKECL 488
              +  E +    +++  L
Sbjct: 1216 AKLLAERDEKEKDLQILL 1233


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 217/556 (39%), Gaps = 69/556 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +    ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 678  LPEDYLYGQTTMYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 735

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 736  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 793

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 794  GGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAE 852

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 853  GIGTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELAS 902

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          +TE+P +       E++ E +    EK    I
Sbjct: 903  NQYVINGEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 952

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 953  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1012

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  +        L 
Sbjct: 1013 VLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELI 1072

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+     + ++  +   +S+      G  +        +L
Sbjct: 1073 KVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPTF------NYLL 1126

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
            ++ L  LT   +D++  + +    E+         +     + K++L +  +EL      
Sbjct: 1127 DMPLWYLTKEKKDELCKQRDEKEQELNTLK-----KKTPSDLWKEDLAAFVEEL------ 1175

Query: 519  RIVEGLLDMEDEDCIV 534
             +VE     +++  + 
Sbjct: 1176 EVVEAKEKQDEQVGLP 1191


>gi|114586205|ref|XP_516332.2| PREDICTED: DNA topoisomerase II, beta isozyme [Pan troglodytes]
          Length = 1634

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 707  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 765

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 766  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 822

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 823  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 881

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 882  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 927

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 928  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 982

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 983  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1042

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1043 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1100

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1101 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1160

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1161 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1206


>gi|47419978|gb|AAT27341.1| DNA gyrase A [Campylobacter jejuni]
          Length = 269

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/292 (38%), Positives = 176/292 (60%), Gaps = 26/292 (8%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT + L 
Sbjct: 4   MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQ 63

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +                  
Sbjct: 64  KARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------------------ 105

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 106 --------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLE 157

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  
Sbjct: 158 NLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEK 217

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS
Sbjct: 218 QKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 269



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ++T++ +G+ KR  S  +    R GKG  A      +    + + F  N +D ++ 
Sbjct: 194 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDD---FIESFFTANTHDTLMF 250

Query: 856 VSDKGTLIRVPVNEIRIAS 874
           V+D+G L  + V +I   S
Sbjct: 251 VTDRGQLYWLKVYKIPEGS 269


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 217/556 (39%), Gaps = 69/556 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +    ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 678  LPEDYLYGQTTMYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 735

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 736  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 793

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 794  GGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAE 852

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 853  GIGTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELAS 902

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          +TE+P +       E++ E +    EK    I
Sbjct: 903  NQYVINGEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 952

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 953  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1012

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  +        L 
Sbjct: 1013 VLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELI 1072

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+     + ++  +   +S+      G  +        +L
Sbjct: 1073 KVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPTF------NYLL 1126

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
            ++ L  LT   +D++  + +    E+         +     + K++L +  +EL      
Sbjct: 1127 DMPLWYLTKEKKDELCKQRDEKEQELNTLK-----KKTPSDLWKEDLAAFVEEL------ 1175

Query: 519  RIVEGLLDMEDEDCIV 534
             +VE     +++  + 
Sbjct: 1176 EVVEAKEKQDEQVGLP 1191


>gi|284154382|gb|ADB78292.1| DNA gyrase [Bacillus sp. B-51132]
 gi|284154386|gb|ADB78294.1| DNA gyrase [Bacillus sp. B-51134]
 gi|284154392|gb|ADB78297.1| DNA gyrase [Bacillus sp. B-51137]
 gi|284154394|gb|ADB78298.1| DNA gyrase [Bacillus sp. B-51138]
 gi|284154412|gb|ADB78307.1| DNA gyrase [Bacillus sp. B-51148]
 gi|284154418|gb|ADB78310.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154436|gb|ADB78319.1| DNA gyrase [Bacillus sp. B-51161]
 gi|284154440|gb|ADB78321.1| DNA gyrase [Bacillus sp. B-51164]
 gi|284154466|gb|ADB78334.1| DNA gyrase [Bacillus sp. B-51180]
 gi|284154484|gb|ADB78343.1| DNA gyrase [Bacillus sp. B-51190]
 gi|284154488|gb|ADB78345.1| DNA gyrase [Bacillus sp. B-51192]
 gi|284154490|gb|ADB78346.1| DNA gyrase [Bacillus sp. B-51193]
 gi|284154542|gb|ADB78372.1| DNA gyrase [Bacillus sp. B-51220]
          Length = 189

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 118/189 (62%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|42527621|ref|NP_972719.1| DNA topoisomerase IV subunit A [Treponema denticola ATCC 35405]
 gi|41818449|gb|AAS12638.1| topoisomerase IV, A subunit, putative [Treponema denticola ATCC
           35405]
          Length = 703

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 135/507 (26%), Positives = 227/507 (44%), Gaps = 59/507 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I      ++L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGH 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+ + A
Sbjct: 61  CM-KYHPHGDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +         D+  +YDG  +EP+   A+ P +L  G  GIAVGM+T I  HN+ E++
Sbjct: 116 KTIF--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +   A +      L         PDFPTG +I       + Y  G G +++R        
Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLI-----DVSEYEDGLGKVLVRAK----LD 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKRG 317
           + D ++IV+ E+P+     +M+  I    +    +I +I+D   E+      + ++L RG
Sbjct: 217 TSDEKRIVIRELPFGSTTESMINSIEAASKAGKVKISEISDYTGEN----VEIELKLPRG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +  +++ LY +T  +     N++ +    P + T+  I+K       +++    +Y  
Sbjct: 273 VYSADVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYER 332

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
               +R H+     I +       RI +     +TA   +          K  +      
Sbjct: 333 AMLTERLHLRTLERIFIEE-----RIYKKIETMKTAEGVINAVIKGFVPFKKELIR---- 383

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      ++E     +L++ + R++    +  R E+  +   +KE   +L +   L
Sbjct: 384 ----------DVTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAKLLKN---L 430

Query: 498 LGIIKQELLSVKDELDTP---RRTRIV 521
            G     L  +  +L      R+T I 
Sbjct: 431 KGYAISVLDGIAAKLPAEEFKRKTEIT 457


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 108/538 (20%), Positives = 205/538 (38%), Gaps = 58/538 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V+ + K V
Sbjct: 777  DHSMDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVKKDIKVV 835

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 836  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 893

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 894  RYIYTRLSPFARRLFHQADEPLLANNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 952

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    ++       D L         P      G  G      TG G  
Sbjct: 953  SIPNYNPEDVVDNLKRLMAG-----DEL--------VPMKPWFRGFKG----EVTGSGD- 994

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ ++E+P +       +K+ E+++ +++   I D +D +    
Sbjct: 995  --RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 1052

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 1053 VHFIIQMEEKHMKKAVEEGLEEKFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAV 1112

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R ++LL++ + +   L   A  V  + +   +I          +EL ++ +  
Sbjct: 1113 RIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKALLIQELQEKGFKP 1171

Query: 425  -----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL-- 477
                    +       +         T  LS      +L + L  LT    + +R ++  
Sbjct: 1172 FPKVVDTPEPGEAGDVEDEEDEEETATAALSSDAYDYLLSMPLWSLTQERVEKLRRQIGD 1231

Query: 478  ------------------NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
                                L   I E    L         I      +  ++ T  R
Sbjct: 1232 KEMEVDALIKLTKEDLWKKDLEEFITEWRFQLEDEENRRKKIAGRGRRLSSKVKTGSR 1289


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 107/530 (20%), Positives = 205/530 (38%), Gaps = 51/530 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 694  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 752

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 753  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 809

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 810  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 868

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 869  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 914

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 915  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 969

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 970  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1029

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1030 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1087

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1088 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1147

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD
Sbjct: 1148 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELD 1192


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 112/522 (21%), Positives = 203/522 (38%), Gaps = 63/522 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 679  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 736

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 737  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 794

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L      L       T+ F  + D    EP       P VL+NG  
Sbjct: 795  GGKDSASPRYIFTMLSPLTRLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 853

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 854  GIGTGWSCKIPNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELAS 903

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 904  NQYVINGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 953

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 954  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1013

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ ILK F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1014 VLDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1073

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++  +   DS    G              +L
Sbjct: 1074 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVAESGPTFNY---------LL 1124

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++  + N    E+    +   S S L   
Sbjct: 1125 DMPLWYLTKEKKDELCKQRNEKEQELNTLKN--KSPSDLWKE 1164


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 97/500 (19%), Positives = 191/500 (38%), Gaps = 38/500 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 715  DHSVDKITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 773

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A          + HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 774  ELAGHVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASA 831

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +  +     + +  + DG+  E  V     P +L+NG  GI  G ++
Sbjct: 832  RYIYTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGWSS 890

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            + P +N  ++V+    ++D               P  P      G TG   A    R   
Sbjct: 891  STPNYNPEDIVENLKRMMDGE-------------PLKPMQPWFRGFTGEVTAVGQDRFKF 937

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 938  -----SGIIKETGDKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 991

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVAFR 365
               VI++        I   L     L    +   +         +  ++  I+K F A R
Sbjct: 992  VHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFYAVR 1051

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA- 424
             +   RR +Y L++ +     L   A  V  + +   +I           EL ++ +   
Sbjct: 1052 LKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVI-SKKKKAVLVAELKEKDFKPF 1110

Query: 425  ----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                  +K                G   +       +L + +  LT    + +R ++   
Sbjct: 1111 PKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLRRQIGDK 1170

Query: 481  GIEIKECLDILSSRSRLLGI 500
             +EI   + +  S+  +   
Sbjct: 1171 ELEIDTLIKL--SKEDIWKR 1188


>gi|313192109|emb|CBX19914.1| gyrase A [Clostridium perfringens]
          Length = 228

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 129/229 (56%), Positives = 172/229 (75%), Gaps = 1/229 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE     R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIE-EENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+  
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQIL 228


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 113/556 (20%), Positives = 217/556 (39%), Gaps = 69/556 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +    ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 679  LPEDYLYGQTTMYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 736

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 737  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 794

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 795  GGKDSASPRYIFTMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAE 853

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 854  GIGTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELAS 903

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          +TE+P +       E++ E +    EK    I
Sbjct: 904  NQYVINGEVAILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 953

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 954  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1013

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  +        L 
Sbjct: 1014 VLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELI 1073

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+     + ++  +   +SS      G  +        +L
Sbjct: 1074 KVLIQRGYDSDPVKAWKEAQQKVPEEEENEENEESESESSSPAAESGPTF------NYLL 1127

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
            ++ L  LT   +D++  + +    E+         +     + K++L +  +EL      
Sbjct: 1128 DMPLWYLTKEKKDELCKQRDEKEQELNTLK-----KKTPSDLWKEDLAAFVEEL------ 1176

Query: 519  RIVEGLLDMEDEDCIV 534
             +VE     +++  + 
Sbjct: 1177 EVVEAKEKQDEQVGLP 1192


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 202/522 (38%), Gaps = 61/522 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  + ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 679  LPEDYLYGQSTSYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 736

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 737  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 794

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 795  GGKDSASPRYIFTMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAE 853

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 854  GIGTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELAS 903

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 904  NQYVINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLI 953

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQS  + N + L  +     +  T
Sbjct: 954  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDT 1013

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  +        L 
Sbjct: 1014 VLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELI 1073

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++       S     +  T          +L
Sbjct: 1074 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTF-------NYLL 1126

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++  + N    E+        S S L   
Sbjct: 1127 DMPLWYLTKEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKE 1166


>gi|284154404|gb|ADB78303.1| DNA gyrase [Bacillus licheniformis]
 gi|284154408|gb|ADB78305.1| DNA gyrase [Bacillus licheniformis]
 gi|284154410|gb|ADB78306.1| DNA gyrase [Bacillus licheniformis]
 gi|284154414|gb|ADB78308.1| DNA gyrase [Bacillus licheniformis]
 gi|284154448|gb|ADB78325.1| DNA gyrase [Bacillus licheniformis]
 gi|284154482|gb|ADB78342.1| DNA gyrase [Bacillus licheniformis]
 gi|284154486|gb|ADB78344.1| DNA gyrase [Bacillus licheniformis]
          Length = 189

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 117/189 (61%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 112/522 (21%), Positives = 203/522 (38%), Gaps = 63/522 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 679  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 736

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 737  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 794

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L      L       T+ F  + D    EP       P VL+NG  
Sbjct: 795  GGKDSASPRYIFTMLSPLTRLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 853

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 854  GIGTGWSCKIPNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELAS 903

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 904  NQYVINGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 953

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 954  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1013

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ ILK F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1014 VLDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1073

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++  +   DS    G              +L
Sbjct: 1074 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVAESGPTFNY---------LL 1124

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++  + N    E+    +   S S L   
Sbjct: 1125 DMPLWYLTKEKKDELCKQRNEKEQELNTLKN--KSPSDLWKE 1164


>gi|284154462|gb|ADB78332.1| DNA gyrase [Bacillus sp. B-51178]
 gi|284154472|gb|ADB78337.1| DNA gyrase [Bacillus sp. B-51183]
          Length = 189

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 116/189 (61%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|329124303|gb|AEB72029.1| DNA gyrase subunit A [Aeromonas sp. A7(2011)]
          Length = 158

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/157 (59%), Positives = 124/157 (78%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+T
Sbjct: 61  IAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKET 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           VD+ PNYDG+   P V+  + PN+LVNG  GIAVG  
Sbjct: 121 VDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWG 157


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 106/531 (19%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 1117 HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 1175

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 1176 N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 1232

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   +  L   +  + + F  + D    EP       P VL+NG
Sbjct: 1233 LHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 1291

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 1292 AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 1337

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 1338 -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 1392

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 1393 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1452

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1453 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1510

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1511 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1570

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1571 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1616


>gi|284154450|gb|ADB78326.1| DNA gyrase [Bacillus sp. B-51172]
 gi|284154458|gb|ADB78330.1| DNA gyrase [Bacillus sp. B-51176]
 gi|284154464|gb|ADB78333.1| DNA gyrase [Bacillus sp. B-51179]
 gi|284154564|gb|ADB78383.1| DNA gyrase [Bacillus sp. B-51232]
          Length = 189

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 117/189 (61%), Positives = 148/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV   P
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKKP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/530 (20%), Positives = 205/530 (38%), Gaps = 51/530 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 699  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 757

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 758  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 814

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 815  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 873

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 874  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 919

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 920  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 974

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 975  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1034

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1035 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1092

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1093 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1152

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD
Sbjct: 1153 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELD 1197


>gi|117654321|gb|ABK55591.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 198

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 151/195 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +++I+V 
Sbjct: 121 EITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKKRIIVP 180

Query: 270 EIPYQVNKAAMLEKI 284
           E+ YQ NKA ++EKI
Sbjct: 181 ELXYQXNKAXLIEKI 195


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
          Length = 1626

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 699  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 757

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 758  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 814

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 815  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 873

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 874  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 919

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 920  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 974

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 975  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1034

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1035 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1092

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1093 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1152

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1153 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1198


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 110/522 (21%), Positives = 202/522 (38%), Gaps = 61/522 (11%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D    +  + ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 180 LPEDYLYGQSTSYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 237

Query: 66  EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
             +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 238 --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 295

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 296 GGKDSASPRYIFTMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAE 354

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 355 GIGTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELAS 404

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                 G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 405 NQYVINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLI 454

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
            D R+       + VI++     A+     L++   LQS  + N + L  +     +  T
Sbjct: 455 TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDT 514

Query: 354 LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
           ++ IL+ F   R +    R ++LL           N+AR     + G  +        L 
Sbjct: 515 VLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELI 574

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           +V+    +  +P  A +E  Q+  +  + ++       S     +  T          +L
Sbjct: 575 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTF-------NYLL 627

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           ++ L  LT   +D++  + N    E+        S S L   
Sbjct: 628 DMPLWYLTKEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKE 667


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 694  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 752

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 753  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 809

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 810  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 868

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 869  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 914

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 915  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 969

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 970  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1029

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1030 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1087

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1088 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1147

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1148 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1193


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 694  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 752

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 753  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 809

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 810  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 868

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 869  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 914

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 915  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 969

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 970  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1029

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1030 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1087

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1088 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1147

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1148 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1193


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 694  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 752

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 753  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 809

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 810  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 868

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 869  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 914

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 915  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 969

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 970  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1029

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1030 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1087

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1088 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1147

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1148 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1193


>gi|288565|emb|CAA78821.1| DNA topoisomerase II [Homo sapiens]
          Length = 1031

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 104 HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 162

Query: 64  GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 163 N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 219

Query: 120 -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
              G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 220 LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 278

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 279 AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 324

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 325 -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 379

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
           I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 380 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 439

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
           T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 440 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 497

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
              + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 498 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 557

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
            LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 558 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 603


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 108/530 (20%), Positives = 205/530 (38%), Gaps = 51/530 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 786  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 844

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 845  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 901

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 902  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 960

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 961  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 1006

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 1007 -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 1061

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 1062 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1121

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1122 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1179

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    S      S   +          IL + L 
Sbjct: 1180 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGTPSGPDFNYILNMSLW 1239

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD
Sbjct: 1240 SLTKEKVEELIKQRDAKGREVSDLKR--KSPSDLW---KEDLAAFVEELD 1284


>gi|18476193|gb|AAL05404.1| DNA topoisomerase IV subunit C [Enterobacter aerogenes]
          Length = 188

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 1/188 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVD 152
           Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K A  LL +LG+ TVD
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           + PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    + +++ P   
Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAITLLEKPKTT 180

Query: 213 LDALMEII 220
           LD L++I+
Sbjct: 181 LDELLDIV 188


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 116/539 (21%), Positives = 211/539 (39%), Gaps = 66/539 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 645  LPDDYLYGQATTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 702

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 703  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 760

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 761  GGKDSASPRYIFTMLSPLARLLFPAKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 819

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 820  GIGTGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTVEELAP 869

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 870  NQYVISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 919

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 920  TDYREYHTDTTVKFVVKMTEEKLAEAERAGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 979

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 980  VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1039

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 1040 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDSEKETEKSDSATDSGPTF-------NY 1092

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            +L++ L  LT   +D++    N    E++       S S L    K++L +  +EL++ 
Sbjct: 1093 LLDMPLWYLTKEKKDELCKLRNEKEQELETLKR--KSPSDLW---KEDLAAFVEELESE 1146


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 104/533 (19%), Positives = 197/533 (36%), Gaps = 45/533 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  +  +KK V
Sbjct: 790  DHSTKEITYTDFVSKELILFSM-ADNLRSIPSVIDGLKPGQRKVLYACFKRNLTKDKKVV 848

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G A++   +  +AQD+  S  + ++E  GNFGS    G   A+ 
Sbjct: 849  ELAGYVSEHTAYHH--GEASLQQTIIGLAQDFVGSNNINVLEPSGNFGSRLAGGSDAASP 906

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RYT  RL   A  +   L +  +  +   DG   EP V     P VLVNG  GI  G +T
Sbjct: 907  RYTFTRLAPFAKKIFSPLDEACLKHQYE-DGKRIEPEVYSPILPMVLVNGADGIGTGWST 965

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP ++  ++V      +   D D          P         G  G  N  A G    
Sbjct: 966  TIPNYHPADIVKNLKRRMGRLDEDDAE-----EKPFETMTPWFRGWKG--NPEAAGPDRY 1018

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLRDESDRQG 307
               G++   +   +  +I++TE+P ++       K+ +++        I D ++ +D + 
Sbjct: 1019 KFNGIAS--QNDQNPNEIIITELPIRMWTDDFKAKLEKVISGSDGPTWIKDYKEFNDHKT 1076

Query: 308  YRVVIELKRGASADVILNQLY-RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
                I +       ++   L  R+   + + + N+VA +  G   +   +  IL+ +   
Sbjct: 1077 VHFEIMVDEKHLPKILEEGLLERFKLTKQIATSNLVAFDTRGQIRKYEKVEDILEEYYVH 1136

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSW 422
            R ++   R +Y L    +       L      + E++   +I           EL  R +
Sbjct: 1137 RLQMYHARKQYWLQVYDNDLEK---LKNQYRFIKEIIDGELIVGRKKKAVLVSELRDRKY 1193

Query: 423  NASDIKDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTG 467
             A           D                    G+    YL   +   + +    +   
Sbjct: 1194 RAFPPGGQKQKTADDEPDESDNENDDDDNQDTAAGAHDYDYLLSERLEKLKDAINKKKDD 1253

Query: 468  LGRDDIRNELN----SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
            +     ++E +     L   + E    ++    L   I++       ++   R
Sbjct: 1254 IEGLSAKSEKDLWCADLDDFMTEWDSQIALEQELQTKIRRMGRRESKKIGAGR 1306


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 115/549 (20%), Positives = 210/549 (38%), Gaps = 79/549 (14%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 779  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 838  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 896  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 955  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 1003

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P         +K+ E+++ +++   I D +D +   
Sbjct: 1004 IKQTADNEVE----------ITELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 1053

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 1054 DVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 1113

Query: 364  FREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LDEVVRIIRFSP 408
             R ++  +R +YLL           N+AR    ++ G  +        L + ++   F P
Sbjct: 1114 VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKP 1173

Query: 409  NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             P+            A D+++  D  ++++    S             +L + L  LT  
Sbjct: 1174 FPKVVGTP---EPGEAGDVEEEEDEEEETTTAAASSDAY-------DYLLSMPLWSLTQE 1223

Query: 469  GRDDIRNEL--------------------NSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
              D +R ++                      L   I E    L         I      +
Sbjct: 1224 RVDKLRRQIGDKEMEVDALIKLSKEDLWRKDLDEFISEWRFQLEDEENRRKKIASRGRRL 1283

Query: 509  KDELDTPRR 517
              ++ T  R
Sbjct: 1284 SAKVKTGSR 1292


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
            180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 107/511 (20%), Positives = 197/511 (38%), Gaps = 58/511 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            +S  D +    + ++ +    R+IP L DGLKP  R++LF  ++ 
Sbjct: 698  HGLPEQYLYGTSTRHLSYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCVKR 756

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV 120
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + +++  G FG+ 
Sbjct: 757  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVNILQPLGQFGTR 813

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +    + F  + D    EP       P VLVNG
Sbjct: 814  INGGKDAASPRYIFTMLSPLAKLLFPAVDSSLLKFLYD-DNQKVEPEWYIPIIPMVLVNG 872

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  IP ++  E+V+    ++++ D            P  P+     G     
Sbjct: 873  AEGIGTGWACKIPNYDPREIVNNINRMLNHQD----------PLPMLPSYKNFKGT---- 918

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
              +  G+   ++ G    E +  D+  I ++E+P +    A  E + E +    +K    
Sbjct: 919  -IHELGQNQYLVSG----EVSVLDKNTIEISELPVRTWTQAYKESVLEPMLQGTDKTPPL 973

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPERF 352
            I+D ++       + V+ +     A      L++   LQS  + N + L  +        
Sbjct: 974  ISDYKEYHTDTTVKFVVRMTEEKLAQAEAAGLHKVFKLQSSLTCNSMVLFDHMGCMKRYE 1033

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVG-LAIAVANLDEV 400
            ++  ILK F   R      R  +L+           N+AR     + G L+I   +  ++
Sbjct: 1034 SVQEILKEFFELRLHYYKLRKDWLVGSLGAESAKLSNQARFVLEKIEGKLSIENKSKRDL 1093

Query: 401  VRI---IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
            +R+     +  +P  A  +  ++S    D           S +       Y        I
Sbjct: 1094 IRMLVQRGYESDPVAAWNKAQEKSLEEEDGGGNDSDSSVDSGSFSGPNFNY--------I 1145

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L + L  LT    +++  + +    E+ E  
Sbjct: 1146 LNMPLWCLTKEKVEELLKQRDLKKAELNELQ 1176


>gi|62719469|gb|AAX93335.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 225

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 118/223 (52%), Positives = 165/223 (73%)

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  +L DL KDTVDF PNYDG+ +EPVVL AR PN+L+NG  GIAVGMATNIP 
Sbjct: 1   SRLSKISMEMLRDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPP 60

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+     ++ NPD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R 
Sbjct: 61  HNLTEVISAIHILMKNPDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRS 120

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    ++ I VTE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I
Sbjct: 121 KTDIEEDKNGKQTIAVTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAI 180

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++R ASA+V+LN L++ T +Q+ FS NM+A+    P+  +L 
Sbjct: 181 DIRRDASAEVVLNNLFKLTLMQTSFSFNMLAIIEGAPKILSLK 223


>gi|62087338|dbj|BAD92116.1| DNA topoisomerase II, beta isozyme variant [Homo sapiens]
          Length = 1009

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 82  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 140

Query: 64  GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 141 N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 197

Query: 120 -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
              G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 198 LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 256

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 257 AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 302

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 303 -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 357

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
           I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 358 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 417

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
           T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 418 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 475

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
              + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 476 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 535

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
            LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 536 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 581


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 113/540 (20%), Positives = 206/540 (38%), Gaps = 61/540 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 699  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 757

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 758  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTR 814

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VLVNG
Sbjct: 815  LHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNG 873

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 874  AEGIGTGWACKLPNYDTREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 919

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+   V+ G    E    DR  + +TE+P +       E++ E +    EK    
Sbjct: 920  -IQELGQNQYVVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPAL 974

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 975  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYE 1034

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T+  ILK F   R      R ++L+           N+AR     + G           L
Sbjct: 1035 TVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDL 1094

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +++    +  +P  A +E  +++    D +   +  DD+S   G       +      I
Sbjct: 1095 IQMLVQRGYESDPVKAWKEAQEKAAEEEDSQ---NANDDASSASGPASGPDFN-----YI 1146

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG-IIKQELLSVKDELDTPR 516
            L + L  LT    +++  + +S   E+ +      S S L    +   +  ++      R
Sbjct: 1147 LNMSLWSLTKEKVEELIKQRDSKERELNDLKR--KSPSDLWKEDLAAFVEELEKVEAQER 1204


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 109/521 (20%), Positives = 198/521 (38%), Gaps = 61/521 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 679  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRND 737

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
            +   K  + A   GE+   +H  G  ++   +  +AQ++  S  L L++  G FG+    
Sbjct: 738  KREVKVAQLAGSVGEMSSYHH--GEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHG 795

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L      L       T+ F  + D    EP       P VL+NG  G
Sbjct: 796  GKDSASPRYIFTMLSPLTRLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEG 854

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNA 240
            I  G +   P  ++ EVV+    ++D  +            P  P+     G    + + 
Sbjct: 855  IGTGWSCKTPNFDIREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASN 904

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
                 G + I   + IE          ++E+P +       E++ E +    EK    I 
Sbjct: 905  QYVINGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLIT 954

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTL 354
            D R+       + VI++     A+     L++   LQ+  + N + L  +     +  T+
Sbjct: 955  DYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTV 1014

Query: 355  IGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LDE 399
            + ILK F   R +    R ++LL           N+AR     + G  I        L +
Sbjct: 1015 LDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIK 1074

Query: 400  VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
            V+    +  +P  A +E  Q+  +  + ++  +   DS    G              +L+
Sbjct: 1075 VLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENSDSVAESGPTFNY---------LLD 1125

Query: 460  LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            + L  LT   +D++  + N    E+    +   S S L   
Sbjct: 1126 MPLWYLTKEKKDELCKQRNEKEQELNTLKN--KSPSDLWKE 1164


>gi|70940757|ref|XP_740752.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518684|emb|CAH79846.1| hypothetical protein PC000560.03.0 [Plasmodium chabaudi chabaudi]
          Length = 370

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 121/321 (37%), Positives = 187/321 (58%), Gaps = 31/321 (9%)

Query: 2   TEHIISSDEEEEKGIT-----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
            E + +  E + K +       V I + +  S+L+YA  +IL R + D RDGLK V RRI
Sbjct: 36  DETVENFFESQTKNLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRI 95

Query: 57  LFGMMQMGVEWNKK-YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ++ M ++    +KK Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      +LI G G
Sbjct: 96  IWSMYEINKGSDKKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYG 155

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           NFGSV+ +  AA RYTE R+    + +L D++  + VD+  N+DG+ +EP VLC++ P +
Sbjct: 156 NFGSVEYN-AAAMRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLL 214

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAV + TNIP+HNL +V++  ++ + N  I  D L  II+GPDF TG +I+ +
Sbjct: 215 LINGCSGIAVSILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITK 274

Query: 235 TG-IKNAYATGRGSIVIRGVSHIEKTSGDR----------------------EQIVVTEI 271
              ++N Y TG+GSI+IR     E    ++                      +++++  +
Sbjct: 275 KDTLRNIYNTGKGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNL 334

Query: 272 PYQVNKAAMLEKIAELVREKR 292
           P  V    ++E I  ++ EK+
Sbjct: 335 PPNVKPNELIENIVTVLNEKK 355


>gi|117654331|gb|ABK55596.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 200

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 116/200 (58%), Positives = 154/200 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKEEILVX 180

Query: 270 EIPYQVNKAAMLEKIAELVR 289
           E+PYQVN A + E  A+LVR
Sbjct: 181 ELPYQVNXARLXEXXADLVR 200


>gi|209163761|gb|ACI40588.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163763|gb|ACI40589.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163765|gb|ACI40590.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163767|gb|ACI40591.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163769|gb|ACI40592.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163771|gb|ACI40593.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163773|gb|ACI40594.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163775|gb|ACI40595.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163777|gb|ACI40596.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163779|gb|ACI40597.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163781|gb|ACI40598.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163783|gb|ACI40599.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163785|gb|ACI40600.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163787|gb|ACI40601.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163789|gb|ACI40602.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163791|gb|ACI40603.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163793|gb|ACI40604.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163795|gb|ACI40605.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163797|gb|ACI40606.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163799|gb|ACI40607.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163801|gb|ACI40608.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163803|gb|ACI40609.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163805|gb|ACI40610.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163807|gb|ACI40611.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163809|gb|ACI40612.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163811|gb|ACI40613.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163813|gb|ACI40614.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163815|gb|ACI40615.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163817|gb|ACI40616.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163819|gb|ACI40617.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163821|gb|ACI40618.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163823|gb|ACI40619.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163825|gb|ACI40620.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163827|gb|ACI40621.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163829|gb|ACI40622.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163831|gb|ACI40623.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163833|gb|ACI40624.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163835|gb|ACI40625.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163837|gb|ACI40626.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163839|gb|ACI40627.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163841|gb|ACI40628.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163843|gb|ACI40629.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163845|gb|ACI40630.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163847|gb|ACI40631.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163849|gb|ACI40632.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163851|gb|ACI40633.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163853|gb|ACI40634.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163855|gb|ACI40635.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163857|gb|ACI40636.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163859|gb|ACI40637.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163863|gb|ACI40639.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163867|gb|ACI40641.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163869|gb|ACI40642.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163873|gb|ACI40644.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163875|gb|ACI40645.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163877|gb|ACI40646.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163879|gb|ACI40647.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163881|gb|ACI40648.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163883|gb|ACI40649.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163885|gb|ACI40650.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163887|gb|ACI40651.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163889|gb|ACI40652.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163891|gb|ACI40653.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163893|gb|ACI40654.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163895|gb|ACI40655.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163901|gb|ACI40658.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163903|gb|ACI40659.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163905|gb|ACI40660.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163907|gb|ACI40661.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163909|gb|ACI40662.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163911|gb|ACI40663.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163913|gb|ACI40664.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163915|gb|ACI40665.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163917|gb|ACI40666.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163919|gb|ACI40667.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163921|gb|ACI40668.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163923|gb|ACI40669.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163925|gb|ACI40670.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163927|gb|ACI40671.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163929|gb|ACI40672.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163931|gb|ACI40673.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163933|gb|ACI40674.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163935|gb|ACI40675.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163937|gb|ACI40676.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163939|gb|ACI40677.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163941|gb|ACI40678.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163949|gb|ACI40682.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163951|gb|ACI40683.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163953|gb|ACI40684.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163957|gb|ACI40686.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163959|gb|ACI40687.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163961|gb|ACI40688.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163963|gb|ACI40689.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163965|gb|ACI40690.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163967|gb|ACI40691.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163969|gb|ACI40692.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163975|gb|ACI40695.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 124/231 (53%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTV+F PN+DG  +EP VL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM +I+GPDFPTGA I+G++GI+ AY TG+G +++R
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIMGKSGIRAAYETGKGRVIVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE    +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR+G R+V
Sbjct: 121 AKAEIE-EENNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           IELK+ A+ +V+LN LY++T +Q  F V M+AL   +P+   +  +L  ++
Sbjct: 180 IELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNEPQVLNIKQVLNYYI 230


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 618  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 676

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 677  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 733

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 734  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 792

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 793  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 838

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 839  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 893

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 894  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 953

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 954  TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1011

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1012 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1071

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1072 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1117


>gi|47419998|gb|AAT27351.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 142/588 (24%), Positives = 257/588 (43%), Gaps = 133/588 (22%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT + L 
Sbjct: 4   MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQ 63

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +                  
Sbjct: 64  KARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAK------------------ 105

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 106 --------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLE 157

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT+                
Sbjct: 158 NLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI---------------- 201

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                                             +  G++ +    +        +GK  
Sbjct: 202 ----------------------------------THRGYIKRVPSKQYEKQKRGGKGKLA 227

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN-----VRRNKLSDFIQINRSGK 673
           +        + I +        ++  +  ++F T  G      V +          ++  
Sbjct: 228 VTTY---DDDFIESFF------TANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVV 278

Query: 674 IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             + L + ++I+++   T  ++   +   TK G   R  +S  +      SVGVR I+L 
Sbjct: 279 NLINLQADEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNI---RSVGVRAINLD 335

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND------------ 778
           + D++++  IV     D +E +  +   +     I+ D   I S+K              
Sbjct: 336 ENDELVTAIIVQR---DENEEVELLDDDNFNDENINPDENAIESVKGKMLFAVTKKGMCI 392

Query: 779 --------------------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                  E N        ++  EQ IL++S KG GKRT++ ++R
Sbjct: 393 KFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYR 452

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           + +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV 
Sbjct: 453 LQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVD 498



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 95/267 (35%), Gaps = 32/267 (11%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  T    + ++  T
Sbjct: 193 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 252

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + +C+   
Sbjct: 253 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLINLQADEKI--MAIIPTTDFDESKSLCFFTK 309

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
               +R    + + I S+       G  +    +  +L    I+   E    +     +F
Sbjct: 310 NGIVKRTNLSEYQNIRSV-------GVRAINLDENDELVTAIIVQRDENEEVELLDDDNF 362

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                          +  N      A+  V     +  V+ KG  I+ P+ ++R   R +
Sbjct: 363 ---------------NDENINPDENAIESVK-GKMLFAVTKKGMCIKFPLAKVREIGRVS 406

Query: 878 KGVVIFST-AKDERVVSVERIRESEIV 903
           +GV       K++ +V    I   E  
Sbjct: 407 RGVTAIKFKEKNDELVGAVVIENDEQE 433



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 54/165 (32%), Gaps = 61/165 (36%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV----------------------- 832
            E  ++T++ +G+ KR  S  +    R GKG  A                          
Sbjct: 194 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTD 253

Query: 833 ---------------SKINEIGALVAVFPVNDNDQIILV---------------SDKGTL 862
                          S+  +  A+V +  +  +++I+ +               +  G +
Sbjct: 254 RGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDESKSLCFFTKNGIV 313

Query: 863 IRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            R  ++E   IR       GV   +  +++ +V+   ++  E  +
Sbjct: 314 KRTNLSEYQNIRSV-----GVRAINLDENDELVTAIIVQRDENEE 353


>gi|284154380|gb|ADB78291.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154396|gb|ADB78299.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154398|gb|ADB78300.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154422|gb|ADB78312.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154430|gb|ADB78316.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154442|gb|ADB78322.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154480|gb|ADB78341.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154494|gb|ADB78348.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154504|gb|ADB78353.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154518|gb|ADB78360.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154520|gb|ADB78361.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154522|gb|ADB78362.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154524|gb|ADB78363.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154532|gb|ADB78367.1| DNA gyrase [Bacillus sp. B-51215]
 gi|284154536|gb|ADB78369.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154538|gb|ADB78370.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154540|gb|ADB78371.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154546|gb|ADB78374.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154550|gb|ADB78376.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154552|gb|ADB78377.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154554|gb|ADB78378.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154558|gb|ADB78380.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154568|gb|ADB78385.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154570|gb|ADB78386.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154572|gb|ADB78387.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154574|gb|ADB78388.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154580|gb|ADB78391.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154582|gb|ADB78392.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154584|gb|ADB78393.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154586|gb|ADB78394.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154588|gb|ADB78395.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154590|gb|ADB78396.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154592|gb|ADB78397.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154598|gb|ADB78400.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154600|gb|ADB78401.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154602|gb|ADB78402.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154604|gb|ADB78403.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154612|gb|ADB78407.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154614|gb|ADB78408.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|209163861|gb|ACI40638.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163865|gb|ACI40640.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163871|gb|ACI40643.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163897|gb|ACI40656.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163899|gb|ACI40657.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163943|gb|ACI40679.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163945|gb|ACI40680.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163947|gb|ACI40681.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163955|gb|ACI40685.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163971|gb|ACI40693.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163973|gb|ACI40694.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/231 (54%), Positives = 175/231 (75%), Gaps = 1/231 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTV+F PN+DG  +EP VL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM +I+GPDFPTGA I+G++GI+ AY TG+G +++R
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIMGKSGIRAAYETGKGRVIVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE    +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR+G R+V
Sbjct: 121 AKSEIE-EENNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           IELK+ A+ +V+LN LY++T +Q  F V M+AL   +P+   +  +L  ++
Sbjct: 180 IELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNEPQVLNIKQVLNYYI 230


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/530 (18%), Positives = 195/530 (36%), Gaps = 39/530 (7%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 +     +S  D +   ++ ++I     R+IP + DGLKP  R++L+   +  ++ 
Sbjct: 779  PGNHLDLTTPEISYDDFVNKEFILFSI-ADNLRSIPSVMDGLKPGQRKVLYTCFRRNIKK 837

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGD 123
            + K V+ A          H  G A++   +  +AQ++  S  +  +E  GNFGS    G 
Sbjct: 838  DVKVVELAGSVSGSTDYAH--GEASMQGTIVGLAQNFVGSNNINYLEPSGNFGSRLRGGA 895

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A+ RY   RL   A  L        + +  + DG   EP +     P +LVNG  GI 
Sbjct: 896  DAASARYIYTRLSPFARRLFHAHDDALLKYGES-DGHKIEPEMFIPVLPTILVNGSSGIG 954

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G ++ IP  N  +++D     + +            +    P      G TG     A 
Sbjct: 955  TGWSSEIPNFNPMDIIDNIRIRLQDGAS---------KEDMKPMTPWYKGFTGTTETLAA 1005

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDE 302
             R           E       ++ VTE+P +       EK+ ++++ ++    I D  D 
Sbjct: 1006 DRFQFTGTIRQTGE------NELEVTELPVRYWTQDFKEKLEDIIKAEKTPAFIKDYIDY 1059

Query: 303  SDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +       +I+++     + +   L   ++  S QS  ++      G   +  +++ I++
Sbjct: 1060 NTPDRVHFIIKMEDKHMLNAVQKGLEETFKLYSKQSTSNLVAFDAQGRIHKYASVLDIME 1119

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP---ETARRE 416
             F   R     +R ++ L         +   A  +  + E   ++            R+ 
Sbjct: 1120 EFYHVRLRYYEKRKQHQLEVMEKELSRMNNQARFIQMIIEGKLVVSKKKKAVLVAELRKL 1179

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                   A D K   +  D        +  + +S      +L + +  LT    + +R +
Sbjct: 1180 NFTPFSKAEDAKKAGETEDVQEEDEDEETELEISASDYDYLLGMAIWSLTQERVEKLRKQ 1239

Query: 477  LNSLGIEIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            +     E+         DI +    L   + +  L +++  D  R+ +I 
Sbjct: 1240 IGDKEEEVDTLIKLSPKDIWNVD--LDAFVDEWNLQLEE--DVKRKKKIA 1285


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
          Length = 1677

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/534 (19%), Positives = 206/534 (38%), Gaps = 47/534 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +    S+S +D +    + +++     R+IP + DG KP  R++L+   +  +  +KK V
Sbjct: 775  DHSTKSISYSDFINRELILFSM-ADNMRSIPSVLDGFKPGQRKVLYACFKRNLVKDKKVV 833

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + +    E    +H  G A++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 834  ELSGYVSEQTAYHH--GEASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGSDAASP 891

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RYT  RL   A  +   + +  +  + + DG   EPV      P VLVNG  GI  G +T
Sbjct: 892  RYTFTRLSPFARKIFSPMDEPNLQHQ-HEDGKKIEPVAYAPIIPMVLVNGADGIGTGWST 950

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP ++  ++V      +   D            P         G  G   A    R   
Sbjct: 951  SIPNYHPEDIVRNLKRRMGRLDEKDGE-----ELPFETMMPWFRGWKGQPEAAGPDRYKF 1005

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQG 307
                    ++   +  +I ++E+P +V       ++ +++        I D ++ +D   
Sbjct: 1006 NGIA----QQNERNPNEITISELPIRVWTDDFKARLEKIISGNDGPAWIKDYKEFNDHSV 1061

Query: 308  YRVVIELKRGASADVILNQ-LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
                + +    +  V+    L R+  L+ + + N+VA +  G   +   +  IL+ +  +
Sbjct: 1062 VHFEVMMDEKHTEKVLEEGILERFKLLKQVATSNLVAFDSRGQIRKYEKVEDILEEYYHY 1121

Query: 365  REEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVANLDEV-VRIIRFSPNPET 412
            R ++   R KY L           N+AR    ++ G  I       V V+ +R       
Sbjct: 1122 RFDMYTERKKYWLGVYHADYRKLKNQARFIKEIIDGELIVGKKKKTVLVQELRDRKYEAF 1181

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             R    +++ +  +     +   D+    G+    YL  +   ++   RL +L     + 
Sbjct: 1182 PRGSDKKKTADEEEDDADDNQDADADMDGGARDYDYLLSMPIWSLTAERLEKL-KAAIEK 1240

Query: 473  IRNELNSLG-------------IEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             + E + L                  E  + L+  + L   I++    V  ++ 
Sbjct: 1241 KKAEHDDLLALSEKDLWCRDLDEFSAEWDNQLALDAELKTNIRRMGRRVSKKIG 1294


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/175 (54%), Positives = 126/175 (72%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   +K +
Sbjct: 374 QQNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPDKAF 433

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC R+ G+VMG++HPHG+ A+YD+L R+ Q WSLR  L  GQGNFGS   D  AA RYT
Sbjct: 434 SKCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYT 493

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           E ++   A  ++ D+ +DTVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGM
Sbjct: 494 ETKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGSVGIAVGM 548



 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/355 (25%), Positives = 162/355 (45%), Gaps = 26/355 (7%)

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            ++  I ++ +  +D  D   RT+    +L     + +V   + + V   G +KR  +  
Sbjct: 503 EMVRDIDEDTVDFQDNYDG--RTQ-EPTVLTARFPNLLVNGSVGIAV---GMIKRTRIDN 556

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG     +R +D V   F+ +TH  +LFF++ G VY+ K + +P G   A+G
Sbjct: 557 YRTQHRGGKGVKDAALRADDIVEHFFVTTTHHWLLFFTNTGRVYRAKTYEVPEGGRDAKG 616

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + L N+L+L   E +T I+   E E+   + ++V AT+ G V++  L+++      G IA
Sbjct: 617 QHLANLLALAPDESVTQILDLREFEA---DRFLVLATRDGLVKKTALTEYDTNRTGGIIA 673

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQ 734
           +KL   DE++S      ++D+LL +K G  VRF  S   +   GR++ GVRG++   GDQ
Sbjct: 674 IKLRDEDELVSALIAESDDDVLLISKHGMSVRFTASDQALRPMGRSTSGVRGMNFRDGDQ 733

Query: 735 VI-------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           ++          + +  +  Y +R    ++    R        ++   + D      + E
Sbjct: 734 LLQASRITEGGYVFVVTEGGYAKRTAVDEYRVQNRGGFGIKVAKLDEARGDLVGGFIVDE 793

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                       +L V   G   R++  +     R+  G+      + + I  + 
Sbjct: 794 ---------GDEVLAVLASGKVVRSNVAEVPAKGRNTMGVVFARFPERDRIIGIA 839



 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 94/253 (37%), Gaps = 13/253 (5%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D      +  +V  +  G VK+  L+ Y   R G  G   + +RDED +    
Sbjct: 629 ESVTQILDLREFEADRFLVLATRDGLVKKTALTEYDTNRTG--GIIAIKLRDEDELVSAL 686

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           I  +   VL  S  G   +       +  P  R  + +  ++   G+++       E   
Sbjct: 687 IAESDDDVLLISKHGMSVRFTASDQAL-RPMGRSTSGVRGMNFRDGDQLLQASRITE--- 742

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILL 698
                YV   T+ G  +R  + ++   NR   G    KLD    +++      + +++L 
Sbjct: 743 ---GGYVFVVTEGGYAKRTAVDEYRVQNRGGFGIKVAKLDEARGDLVGGFIVDEGDEVLA 799

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
               G+ VR  ++ +     RN++GV      + D++I +A       D  E        
Sbjct: 800 VLASGKVVRSNVAEVPAKG-RNTMGVVFARFPERDRIIGIARNTERGLDDAEAESAAGEP 858

Query: 759 SAQRRLISGDTEE 771
           +        + +E
Sbjct: 859 AETDAAEHAEDKE 871



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 9/149 (6%)

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                R I  DT +     +  + E  +   R   L +     + V   G  KRT   ++
Sbjct: 501 AMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGSVGIAV---GMIKRTRIDNY 557

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R  +R GKG++   +   +    +   F    +  ++  ++ G + R    E+    R  
Sbjct: 558 RTQHRGGKGVKDAALRADD---IVEHFFVTTTHHWLLFFTNTGRVYRAKTYEVPEGGRDA 614

Query: 878 KGVVIFS---TAKDERVVSVERIRESEIV 903
           KG  + +    A DE V  +  +RE E  
Sbjct: 615 KGQHLANLLALAPDESVTQILDLREFEAD 643


>gi|284154616|gb|ADB78409.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 148/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 208/536 (38%), Gaps = 63/536 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 600  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 658

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 659  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTR 715

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VLVNG
Sbjct: 716  LHGGKDAASPRYIFTMLSPLARLLYPSVDDNLLKFLYD-DNQRVEPEWYIPIIPLVLVNG 774

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P+     G     
Sbjct: 775  AEGIGTGWACKLPNYDTREIVNNVKRMLDGLD----------PYPLLPSYKNFKGT---- 820

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  I +TE+P +       E++ E +    EK    
Sbjct: 821  -IQELGQNQYAMSG----EIYVLDRNTIEITELPVRTWTQVYKEQVLEPMLNGTEKTPSL 875

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 876  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYE 935

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVA----NL 397
            T+  ILK F   R      R ++L+           N+AR     + G          +L
Sbjct: 936  TVQDILKEFFDLRLNYYTLRKEWLIGMLGAEAARLNNQARFVLEKIQGKISIENKTKRDL 995

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +++    F  +P  A +E  +++    D++D  +     S   GS             I
Sbjct: 996  IQMLVQKGFESDPVKAWKEAQEKATEEDDLQDPNEDNSSDS-GTGSGPDF-------NYI 1047

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            L + L  L+    D++  + +    E+ +       R     + K++L +  +ELD
Sbjct: 1048 LNMSLWSLSKEKVDELVRQRDIKSKELNDLK-----RKSPPDLWKEDLAAFVEELD 1098


>gi|284154498|gb|ADB78350.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNXRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154528|gb|ADB78365.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+R NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYRDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 694  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 752

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 753  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 809

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 810  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 868

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 869  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 914

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 915  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 969

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 970  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1029

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1030 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1087

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1088 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLW 1147

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1148 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1193


>gi|284154492|gb|ADB78347.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITVQDLMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|1405716|emb|CAA97570.1| gyrase A subunit [Haemophilus influenzae]
          Length = 171

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/178 (58%), Positives = 132/178 (74%), Gaps = 7/178 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 171


>gi|117654325|gb|ABK55593.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 149/187 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVN 276
           E+PYQVN
Sbjct: 181 ELPYQVN 187


>gi|284154578|gb|ADB78390.1| DNA gyrase [Bacillus sp. B-51240]
 gi|284154594|gb|ADB78398.1| DNA gyrase [Bacillus sp. B-51249]
 gi|284154596|gb|ADB78399.1| DNA gyrase [Bacillus sp. B-51250]
          Length = 189

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D+ +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 105/535 (19%), Positives = 209/535 (39%), Gaps = 51/535 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + D   +  +  +S TD + N  + +++     R+IP + DG+KP  R++++ +M+  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSM-ADNLRSIPSMVDGMKPGQRKVMYTVMKRNI- 818

Query: 67   WNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
              KK VK   ++G+V     + HG+A+++  +  +AQD+  S  +  +E  GNFGS    
Sbjct: 819  --KKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKG 876

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   ++ RY   RL   A  +        + +  + DG   EP V     P +L+NG  G
Sbjct: 877  GADASSARYIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGADG 935

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP +N  ++VD    +I   +I              P      G  G     
Sbjct: 936  IGTGWSTSIPNYNPEDIVDNLKRMIRGEEIK-------------PMQPWFKGFKG--EVT 980

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLR 300
              G       G+           ++ VTE+P +      + K+ E+++  +    I D +
Sbjct: 981  QLGPDKYKFSGLIKQVSDK----ELEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYK 1036

Query: 301  DESDRQGYRVVIELKRGASAD----VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D +      +V++L      +      L + ++ +   +  ++      G   +   +  
Sbjct: 1037 DYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEA 1096

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            IL+ F   R +   +R ++ L++ +     L   A  V  + +   ++          +E
Sbjct: 1097 ILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVHMIIDG-DLVVSKKKKSVLVKE 1155

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ---------TRAILELRLARLTG 467
            L    +   +         ++   I +      +E Q            +L + +  LT 
Sbjct: 1156 LDSLGFKRFNKTADAAKAGETEKVIEASEDED-TEAQDDTQDLAHAFDYLLGMAIWSLTQ 1214

Query: 468  LGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQELLSVKDELDTPRRTR 519
               + +R ++     EI E + + S       L   I +    + +   T RR R
Sbjct: 1215 ERVEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSE---TDRRRR 1266


>gi|47419994|gb|AAT27349.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/591 (24%), Positives = 255/591 (43%), Gaps = 121/591 (20%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT + L 
Sbjct: 5   MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQ 64

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +                  
Sbjct: 65  KARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------------ 106

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 107 --------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLE 158

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT+                
Sbjct: 159 NLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI---------------- 202

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                                             +  G++ +    +        +GK  
Sbjct: 203 ----------------------------------THRGYIKRVPSKQYEKQKRGGKGKLA 228

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN-----VRRNKLSDFIQINRSGK 673
           +        + I +        ++  +  ++F T  G      V +          ++  
Sbjct: 229 VTTY---DDDFIESFF------TANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVV 279

Query: 674 IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             + L + ++I+++   T  ++   +   TK G   R  +S  +      SVGV+ I+L 
Sbjct: 280 NLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNI---RSVGVKAINLD 336

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D++++  IV                          + EE   L +DS  + N + +  
Sbjct: 337 ENDELVTAIIVQRD-----------------------ENEETGLLDDDSLNDENTNSDEN 373

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               +K + +  V++KG   +      R   R  +G+ A    + N+   + AV   ND 
Sbjct: 374 LIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDE-LVGAVVIENDE 432

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRES 900
            +I+ +S KG   R    E R+ SR  KGV+      K + ++SV  + ES
Sbjct: 433 QEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELISVVIVDES 483



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 97/294 (32%), Gaps = 86/294 (29%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  T    + ++  T
Sbjct: 194 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 253

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  I+L   +++  MAI+   D D ++ +C+   
Sbjct: 254 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLINLQADEKI--MAIIPTTDFDENKSLCF--- 307

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                         ++ G  KRT+  ++
Sbjct: 308 ---------------------------------------------FTKNGIVKRTNLSEY 322

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND-------------------------- 851
              N    G++A ++ + +E+   + V    + +                          
Sbjct: 323 --QNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKG 380

Query: 852 -QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
             +  V+ KG  I+ P+ ++R   R ++GV       K++ +V    I   E  
Sbjct: 381 KMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQE 434



 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 104/307 (33%), Gaps = 67/307 (21%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DE++++   + +N     + + +     + A 
Sbjct: 56  IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQAN 115

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            +   +     R   L +      +A ++   A  DE +     +    R    + +   
Sbjct: 116 AILDMKLG---RLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF 172

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV- 832
            +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A    
Sbjct: 173 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 232

Query: 833 -------------------------------------SKINEIGALVAVFPVNDNDQIIL 855
                                                S+  +  A+V +  +  +++I+ 
Sbjct: 233 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMA 292

Query: 856 V---------------SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERI 897
           +               +  G + R  ++E   IR       GV   +  +++ +V+   +
Sbjct: 293 IIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSV-----GVKAINLDENDELVTAIIV 347

Query: 898 RESEIVD 904
           +  E  +
Sbjct: 348 QRDENEE 354


>gi|47419986|gb|AAT27345.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/591 (24%), Positives = 255/591 (43%), Gaps = 121/591 (20%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT + L 
Sbjct: 4   MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQ 63

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +                  
Sbjct: 64  KARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------------ 105

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 106 --------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLE 157

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT+                
Sbjct: 158 NLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI---------------- 201

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                                             +  G++ +    +        +GK  
Sbjct: 202 ----------------------------------THRGYIKRVPSKQYEKQKRGGKGKLA 227

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN-----VRRNKLSDFIQINRSGK 673
           +        + I +        ++  +  ++F T  G      V +          ++  
Sbjct: 228 VTTY---DDDFIESFF------TANTHDTLMFVTDRGQLYWLKVYKXPEGSRTAKGKAVV 278

Query: 674 IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             + L + ++I+++   T  ++   +   TK G   R  +S  +      SVGV+ I+L 
Sbjct: 279 NLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNI---RSVGVKAINLD 335

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D++++  IV                          + EE   L +DS  + N + +  
Sbjct: 336 ENDELVTAIIVQRD-----------------------ENEETGLLDDDSLNDENTNSDEN 372

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               +K + +  V++KG   +      R   R  +G+ A    + N+   + AV   ND 
Sbjct: 373 LIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDE-LVGAVVIENDE 431

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRES 900
            +I+ +S KG   R    E R+ SR  KGV+      K + ++SV  + ES
Sbjct: 432 QEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTDKTKELISVVIVDES 482



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 86/294 (29%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  T    + ++  T
Sbjct: 193 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 252

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +        R + G   V  I+L   +++  MAI+   D D          
Sbjct: 253 DRGQLYWLKVYKX-PEGSRTAKGKAVVNLINLQADEKI--MAIIPTTDFD---------- 299

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                 + + +   ++ G  KRT+  ++
Sbjct: 300 --------------------------------------ENKSLCFFTKNGIVKRTNLSEY 321

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND-------------------------- 851
              N    G++A ++ + +E+   + V    + +                          
Sbjct: 322 --QNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKG 379

Query: 852 -QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
             +  V+ KG  I+ P+ ++R   R ++GV       K++ +V    I   E  
Sbjct: 380 KMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQE 433



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 104/307 (33%), Gaps = 67/307 (21%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DE++++   + +N     + + +     + A 
Sbjct: 55  IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQAN 114

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            +   +     R   L +      +A ++   A  DE +     +    R    + +   
Sbjct: 115 AILDMKLG---RLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF 171

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV- 832
            +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A    
Sbjct: 172 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 231

Query: 833 -------------------------------------SKINEIGALVAVFPVNDNDQIIL 855
                                                S+  +  A+V +  +  +++I+ 
Sbjct: 232 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKXPEGSRTAKGKAVVNLINLQADEKIMA 291

Query: 856 V---------------SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERI 897
           +               +  G + R  ++E   IR       GV   +  +++ +V+   +
Sbjct: 292 IIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSV-----GVKAINLDENDELVTAIIV 346

Query: 898 RESEIVD 904
           +  E  +
Sbjct: 347 QRDENEE 353


>gi|284154424|gb|ADB78313.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154428|gb|ADB78315.1| DNA gyrase [Bacillus sp. B-51157]
 gi|284154444|gb|ADB78323.1| DNA gyrase [Bacillus sp. B-51169]
 gi|284154470|gb|ADB78336.1| DNA gyrase [Bacillus sp. B-51182]
 gi|284154476|gb|ADB78339.1| DNA gyrase [Bacillus sp. B-51185]
 gi|284154478|gb|ADB78340.1| DNA gyrase [Bacillus sp. B-51186]
 gi|284154506|gb|ADB78354.1| DNA gyrase [Bacillus sp. B-51202]
 gi|284154514|gb|ADB78358.1| DNA gyrase [Bacillus sp. B-51206]
 gi|284154534|gb|ADB78368.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154544|gb|ADB78373.1| DNA gyrase [Bacillus sp. B-51222]
 gi|284154606|gb|ADB78404.1| DNA gyrase [Bacillus sp. B-51256]
 gi|284154608|gb|ADB78405.1| DNA gyrase [Bacillus sp. B-51257]
 gi|284154610|gb|ADB78406.1| DNA gyrase [Bacillus sp. B-51258]
 gi|284154620|gb|ADB78411.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154636|gb|ADB78419.1| DNA gyrase [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|289804388|ref|ZP_06535017.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 161

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 102/161 (63%), Positives = 127/161 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           DG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 161


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
            gallopavo]
          Length = 1688

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 201/529 (37%), Gaps = 51/529 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 765  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 823

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 824  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTR 880

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VLVNG
Sbjct: 881  LHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNG 939

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 940  AEGIGTGWACKLPNYDTREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 985

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+   V+ G    E    DR  + +TE+P +       E++ E +    EK    
Sbjct: 986  -IQELGQNQYVVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPAL 1040

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 1041 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYE 1100

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S    
Sbjct: 1101 TVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--R 1158

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLA 463
               + L+QR + +  +K   +  + ++                   S      IL + L 
Sbjct: 1159 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEDPQNPNDDASSASGSTSGPDFNYILNMSLW 1218

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
             LT    +++    +S   E+ +     +S      + K++L +  +EL
Sbjct: 1219 SLTKEKVEELIKHRDSKERELNDLKRKSASD-----LWKEDLAAFVEEL 1262


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 107/530 (20%), Positives = 205/530 (38%), Gaps = 51/530 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 676  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 734

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 735  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 791

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   +  L   +  + + F  + D    EP       P VL+NG
Sbjct: 792  LHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 850

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 851  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 896

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 897  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 951

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 952  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1011

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1012 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1069

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1070 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1129

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             LT    +++  + +S G E+ +      S S L    K++L +  +ELD
Sbjct: 1130 SLTKEKVEELIKQRDSKGREVNDLKR--KSPSDLW---KEDLAAFVEELD 1174


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
            caballus]
          Length = 1630

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/531 (19%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 706  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 764

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 765  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 821

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 822  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 880

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    +++  D            P  P      G     
Sbjct: 881  AEGIGTGWACKLPNYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGT---- 926

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 927  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 981

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 982  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1041

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1042 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1099

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1100 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1159

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1160 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1205


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 113/524 (21%), Positives = 201/524 (38%), Gaps = 63/524 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSPLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDVREVVNNIRLLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     D S     S  T          
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKEADKSDSVADSGPTF-------NY 1127

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +L++ L  LT   +D++    N    E++       S S L   
Sbjct: 1128 LLDMPLWYLTKEKKDELCKLRNEKEQELETLKR--KSPSDLWKE 1169


>gi|284154378|gb|ADB78290.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|117654323|gb|ABK55592.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 187

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 149/187 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVN 276
           E+PYQVN
Sbjct: 181 ELPYQVN 187


>gi|284154630|gb|ADB78416.1| DNA gyrase [Bacillus tequilensis]
          Length = 189

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV ++P
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
            [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
            nidulans FGSC A4]
          Length = 1709

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 105/535 (19%), Positives = 209/535 (39%), Gaps = 51/535 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + D   +  +  +S TD + N  + +++     R+IP + DG+KP  R++++ +M+  + 
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSM-ADNLRSIPSMVDGMKPGQRKVMYTVMKRNI- 818

Query: 67   WNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
              KK VK   ++G+V     + HG+A+++  +  +AQD+  S  +  +E  GNFGS    
Sbjct: 819  --KKDVKVLDLTGQVFSLTAYHHGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLKG 876

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   ++ RY   RL   A  +        + +  + DG   EP V     P +L+NG  G
Sbjct: 877  GADASSARYIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGADG 935

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP +N  ++VD    +I   +I              P      G  G     
Sbjct: 936  IGTGWSTSIPNYNPEDIVDNLKRMIRGEEIK-------------PMQPWFKGFKG--EVT 980

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLR 300
              G       G+           ++ VTE+P +      + K+ E+++  +    I D +
Sbjct: 981  QLGPDKYKFSGLIKQVSDK----ELEVTELPIRTWTQDFINKLEEMIKADKAPSLIKDYK 1036

Query: 301  DESDRQGYRVVIELKRGASAD----VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D +      +V++L      +      L + ++ +   +  ++      G   +   +  
Sbjct: 1037 DYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEA 1096

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            IL+ F   R +   +R ++ L++ +     L   A  V  + +   ++          +E
Sbjct: 1097 ILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVQMIIDG-DLVVSKKKKSVLVKE 1155

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ---------TRAILELRLARLTG 467
            L    +   +         ++   I +      +E Q            +L + +  LT 
Sbjct: 1156 LDSLGFKRFNKTADAAKAGETEKVIEASEDED-TEAQDDTQDLAHAFDYLLGMAIWSLTQ 1214

Query: 468  LGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQELLSVKDELDTPRRTR 519
               + +R ++     EI E + + S       L   I +    + +   T RR R
Sbjct: 1215 ERVEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSE---TDRRRR 1266


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 204/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 671  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 729

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 730  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 786

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 787  LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 845

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 846  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 891

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 892  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 946

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++         V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 947  ISDYKEYHTDTTVNSVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1006

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1007 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1064

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1065 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1124

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1125 SLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1170


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 685  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 743

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 744  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 800

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   +  L   +  + + F  + D    EP       P VL+NG
Sbjct: 801  LHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 859

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 860  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 905

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 906  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 960

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 961  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1020

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1021 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1078

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1079 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1138

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + +S G E+ +      S S L    K++L +  +ELD 
Sbjct: 1139 SLTKEKVEELIKQRDSKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1184


>gi|284154384|gb|ADB78293.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154400|gb|ADB78301.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154406|gb|ADB78304.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154426|gb|ADB78314.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154434|gb|ADB78318.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154438|gb|ADB78320.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154446|gb|ADB78324.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154502|gb|ADB78352.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154508|gb|ADB78355.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154516|gb|ADB78359.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154548|gb|ADB78375.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154556|gb|ADB78379.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154562|gb|ADB78382.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154576|gb|ADB78389.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154618|gb|ADB78410.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154622|gb|ADB78412.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154624|gb|ADB78413.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
          Length = 189

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 191/495 (38%), Gaps = 37/495 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +    S++  D +    + +++     R+IP + DGLKP  R+++F   +  +  ++K V
Sbjct: 726  DHSTKSITYDDFVNRELILFSM-ADNMRSIPSVLDGLKPGQRKVMFACFKRNLTKDQKVV 784

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 785  ELAGYVSEKAAYHH--GEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASP 842

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +   L +  ++ +   DG   EP V     P VL NG  GI  G +T
Sbjct: 843  RYIHTRLSPFARKIFSVLDEPNLEVQME-DGKPIEPKVYAPIIPMVLCNGADGIGTGWST 901

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP ++  E+V      +   D D          P         G  G        R   
Sbjct: 902  SIPNYHPMEIVRAIKRRMGRLDSDDTE-----GKPFETMMPWFRGWKGTPEPAEKDR--Y 954

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQG 307
               G+   +  +G+   I++ E+P ++       K+ E++   +    I D ++ +D + 
Sbjct: 955  KFNGIYETDDKTGE---IIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFNDHKN 1011

Query: 308  YRVVIELKRGASADVILNQL-----YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
               VI+L      D+          ++     +  ++      G   +   +  IL+ F 
Sbjct: 1012 VNFVIQLDEKHYKDIHKTHEGIMDRFKLNKQVATSNLVAFDSTGRIRKYEKVEDILEEFY 1071

Query: 363  AFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             +R ++   R K+ L           N+AR    ++ G  I       V+ +        
Sbjct: 1072 VYRLDMYSARKKHWLGVYHSDYRKLKNQARFIQEIIDGELIVSKKRKPVL-VQELRDRKY 1130

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             A  +   +    ++ +D+    ++     G+    YL  +   ++   RL RL      
Sbjct: 1131 EAFPKNDGKKQATTEEEDMDASDNEDDSVGGAADYDYLLSLPIWSLTLERLERLNSA-IM 1189

Query: 472  DIRNELNSLGIEIKE 486
              + E ++L  + ++
Sbjct: 1190 KKKGEHDALLAQSEK 1204


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
            cuniculus]
          Length = 1667

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF  +  
Sbjct: 742  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCLNR 800

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 801  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 857

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 858  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 916

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 917  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 962

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 963  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 1017

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 1018 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1077

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1078 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1135

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1136 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1195

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1196 SLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1241


>gi|284154560|gb|ADB78381.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+  NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYHDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 106/531 (19%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 687  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 745

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 746  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 802

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 803  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 861

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    +++  D            P  P      G     
Sbjct: 862  AEGIGTGWACKLPNYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGT---- 907

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 908  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 962

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 963  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1022

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1023 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1080

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1081 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEDAQNPHDDSSSDSGTPSGPDFNYILNMSLW 1140

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1141 SLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|313757053|gb|ADR78334.1| gyrase [Ferroplasma acidiphilum]
          Length = 176

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 106/173 (61%), Positives = 133/173 (76%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV  +K Y K ARI G
Sbjct: 4   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 63

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E MGKYHPHG+++IY+ALARMAQD+SLR  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 64  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 123

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             ++ D+ K+TV F PN+DGS  EPV   +R P +L+NG  GIAVGMATN+  
Sbjct: 124 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVP 176


>gi|119952841|ref|YP_945050.1| DNA topoisomerase IV subunit A [Borrelia turicatae 91E135]
 gi|119861612|gb|AAX17380.1| topoisomerase IV subunit A [Borrelia turicatae 91E135]
          Length = 628

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 132/507 (26%), Positives = 233/507 (45%), Gaps = 56/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  M    + + L IE QGNFG+ + GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNM----ANKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +LV G  GIAVGMA  I  HN  E
Sbjct: 113 LAFEVL--YSKEITSYEPSYDGRNDEPLIFPAKIPVILVQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     +L         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILSAVKSELLGESYEL--------YPDFPTGGIV-----DVNEYADGNGKVLVRAR--IE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
            T  D + I++ E+P+     +++  I   +R+   ++  I D   E+      + + L 
Sbjct: 216 PTD-DNKAILIKELPFGETTESLIASIERAIRKNYIKVSSINDFTTEN----VEIELTLP 270

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++++    + 
Sbjct: 271 RGVYASEVIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIKFHAEHLQKILKMELEL 330

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             NK  ++  +       +    ++ +I+            ++       D     D++ 
Sbjct: 331 ERNKILEK--IFSKTLEQMFIEKKIYKILETISKESDVVNIVLSEILKYKDSFLYRDIVL 388

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D                    +L++ + +++    D    ++ +L     E   + S+  
Sbjct: 389 DD----------------IENLLKIPIRKISMFDIDKNNKDIRNLSK---ELKSVESNIK 429

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     + ++ ++      R+T I
Sbjct: 430 SIRGFSINFIDTLLEKYSKVYRRKTEI 456


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
            Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 106/531 (19%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 687  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 745

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 746  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 802

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 803  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 861

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 862  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 907

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 908  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 962

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 963  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1022

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1023 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1080

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  ++   +  + ++    +      S   +          IL + L 
Sbjct: 1081 DLIQMLVQRGYESDPVRAWKEAQEKAAEEEDTQNQHDDSSSDSGTPSGPDFNYILNMSLW 1140

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1141 SLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|284154628|gb|ADB78415.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1218

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/498 (18%), Positives = 181/498 (36%), Gaps = 41/498 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  +T +S+ D +    + +++     R+IP   DG KP  R+ILF   +  +
Sbjct: 725  FQPGTYMDHSVTEISLPDFINRELILFSM-ADNARSIPSSVDGFKPGQRKILFACFKRNL 783

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
            +   K  + A    E    +H  G  ++   +  MAQ++  S  L ++E  G FG+    
Sbjct: 784  KSEIKVAQLAGYVAEHSAYHH--GEQSLNATIVNMAQNFIGSNNLGVLEPLGQFGTRLQG 841

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L   A  +        + +  + DG   EP       P +LVNG  G
Sbjct: 842  GKDAASPRYIFTNLTPLARTVFHPSDDPLLTYLVD-DGQNIEPEWYLPVLPMLLVNGADG 900

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +++IP +N  ++V+    ++ +     + L EI             G +G     
Sbjct: 901  IGTGWSSSIPNYNPRDIVECLHRLMRH-----EELFEI--------HPWYRGFSGKIERE 947

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADL 299
               R  +             D   + +TE+P +    +  E++   +   EK+   I D 
Sbjct: 948  TPERYKVTGCIR------KIDSNTVEITELPIRTWTQSYKEQLEAWLTGTEKQTAWIKDY 1001

Query: 300  RDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            ++         ++ L   A +      L   ++  S  S+ ++    L G   +   +  
Sbjct: 1002 KEYHTDSKVHFIVTLTDQAMSLAESEGLEKRFKLISSVSVSNIVCFDLEGRIRKYDGVQD 1061

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR- 415
            I+K F   R     +R  ++L         L      V  +     +++     +  +  
Sbjct: 1062 IIKDFYELRLSYYQKRKNHMLQTLTFEYERLESKVRFVTEIITGKLVVQNRKRIDLLKEL 1121

Query: 416  -----ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-RAILELRLARLTGLG 469
                 +L+ +    S+  +  +  DD++    S         Q    +L + +  LT   
Sbjct: 1122 VTRKYKLIPKKKAGSEATNGSEGSDDANDGDESVQDDD--PRQGYDYLLSMPIWNLTWEK 1179

Query: 470  RDDIRNELNSLGIEIKEC 487
               ++ E+     EIK  
Sbjct: 1180 VQQLQKEMQDREDEIKAL 1197


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 687  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 745

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 746  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 802

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 803  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 861

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    +++  D            P  P      G     
Sbjct: 862  AEGIGTGWACKLPNYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGT---- 907

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 908  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 962

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 963  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1022

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1023 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1080

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    S      S   +          IL + L 
Sbjct: 1081 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLW 1140

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1141 SLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus anatinus]
          Length = 1746

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 112/535 (20%), Positives = 211/535 (39%), Gaps = 60/535 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +  D    K    ++  D +    + ++ +    R+IP + DGLKP  R++LF   + 
Sbjct: 706  HGLPEDYLYGKATNYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFRR 764

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+ 
Sbjct: 765  N---DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNVNLLQPIGQFGTR 821

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L      +T+ F  + D    EP       P VLVNG
Sbjct: 822  LHGGKDSASPRYIFTMLSPLARLLFPVKDDNTLKFLYD-DNQRVEPEWYIPIVPMVLVNG 880

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +  +P +++ EVV+    ++D  +            P  P+     G     
Sbjct: 881  AEGIGTGWSCKLPNYDVREVVNNIRRMMDGEE----------PLPMLPSYKNFKGTID-- 928

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                      VI G   I     D   I ++E+P +       E++ E +    EK    
Sbjct: 929  ---ELAPNQYVINGEVSI----LDSTTIEISELPVRTWTQVYKEQVLEPMLNGTEKTPAL 981

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D R+       + ++++     A+     L++   LQ+  + N + L  +     +  
Sbjct: 982  IVDYREYHTDTTVKFIVKMTEQKLAEAEAAGLHKVFKLQTNLTCNSMVLFDHVGCLKKYD 1041

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T + IL+ F   R +    R ++L+           N+AR     + G  +        L
Sbjct: 1042 TALDILRDFFELRLKYYGLRKEWLVGMLGAESARLNNQARFILEKIEGKIVIENKPKKEL 1101

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +V+    +  +P  A +E  Q+     + +D  +  +       S      +      +
Sbjct: 1102 IKVLIQRGYDSDPVKAWKEAQQKGSGEEENEDSENEKETEKSESTSATGPDFN-----YL 1156

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            LE+ L  LT   +D++  + ++   E++       S + L    K++L +  +EL
Sbjct: 1157 LEMPLWYLTKEKKDELCRQRDNKTQELETLKR--KSPADLW---KEDLAAFVEEL 1206


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 107/531 (20%), Positives = 205/531 (38%), Gaps = 51/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 687  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 745

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 746  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 802

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 803  LHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 861

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    +++  D            P  P      G     
Sbjct: 862  AEGIGTGWACKLPNYDAREIVNNVRRMLEGLD----------PHPMLPNYKNFKGT---- 907

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 908  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 962

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 963  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1022

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1023 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1080

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    S      S   +          IL + L 
Sbjct: 1081 DLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHDDSSSDSGTPSGPDFNYILNMSLW 1140

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1141 SLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 1186


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 209/535 (39%), Gaps = 63/535 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 704  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 762

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 763  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTR 819

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VLVNG
Sbjct: 820  LHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNG 878

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 879  AEGIGTGWACKLPNYDTREIVNNVRRMLDGLD----------PHPMLPNYKNFRGT---- 924

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+   V+ G    E    DR  + +TE+P +       E++ E +    EK    
Sbjct: 925  -IQELGQNQYVVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPAL 979

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 980  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYE 1039

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T+  ILK F   R      R ++L+           N+AR     + G           L
Sbjct: 1040 TVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDL 1099

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +++    +  +P  A +E  +++    D +   +  DD+S   GS      +      I
Sbjct: 1100 IQMLVQRGYESDPVKAWKEAQEKAAEEEDPQ---NANDDASSASGSTSGPDFN-----YI 1151

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            L + L  LT    +++    +S   E+ +     +S      + K++L +  +EL
Sbjct: 1152 LNMSLWSLTKEKVEELIKHRDSKERELNDLKRKSASD-----LWKEDLAAFVEEL 1201


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 109/522 (20%), Positives = 202/522 (38%), Gaps = 59/522 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSPLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++  +  +        D     +      +L
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFN-----YLL 1129

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++    N    E++       S S L   
Sbjct: 1130 DMPLWYLTKEKKDELCKLRNEKEQELETLKR--KSPSDLWKE 1169


>gi|29602637|gb|AAO85705.1| GyrA [Campylobacter jejuni]
          Length = 170

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 100/170 (58%), Positives = 126/170 (74%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK 
Sbjct: 1   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           + K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAV
Sbjct: 121 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAV 170


>gi|297568941|ref|YP_003690285.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924856|gb|ADH85666.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 660

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 125/505 (24%), Positives = 220/505 (43%), Gaps = 54/505 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           ++      +++ Y   VI  RAIPDL DGLKPV RRIL     +    + ++ K A + G
Sbjct: 8   NLHKLFDENFIDYTSYVIRERAIPDLADGLKPVQRRIL---QTLHNVDDGRFHKVANVVG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           E M K HPHG+A+I+ AL  +    + +  L++ QGNFG++  GD  +A RY ECRL   
Sbjct: 65  ETM-KLHPHGDASIFSALVNL----ANKGYLVDRQGNFGNIYTGDSASAARYIECRLTPL 119

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A        ++  +F  +YDG  +EPV L A+ P +L+ G  GIAVGMAT I  HN  E+
Sbjct: 120 AR--ETMFNRELTEFTDSYDGRMKEPVSLPAKLPLLLLQGAEGIAVGMATKIMPHNFCEL 177

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     ++           E    PDF  G ++       +AY  G G +  R       
Sbjct: 178 LQAQKKILQGE--------EFAVYPDFYQGGLL-----DVSAYDDGNGRLRCRARIE--- 221

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + I++ EIP+  N   ++E + +  R  +   ++   ++   +   + I+L RG 
Sbjct: 222 -EKDDKTIIIREIPFGTNTQGLIESVEKAARAGKFKILS--INDYTAEEVEIEIKLARGL 278

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+  +  LY +T  +   S N   +    P   ++  +L+   +    ++ +  +  L 
Sbjct: 279 KAEETIKALYAFTDCELAISPNFTVIRDRNPVILSVSEVLRENTSRLYNLLEKELQLELA 338

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           + ++R         A       +               L ++       + +I  ID++ 
Sbjct: 339 RLKER-------LQAHQLERIFIE------------ERLYKQIEECPSFELVIKTIDEAL 379

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               ++    +S      +LE+++ R++    +  + E+ +   +IKE    L     + 
Sbjct: 380 KPYTAELVRPVSREDIEKLLEIKIKRISRYDIERKKKEIKATLRQIKEVEKNLRD---MT 436

Query: 499 GIIKQELLSVKDELDT--PRRTRIV 521
           G   + L  +        PRRT + 
Sbjct: 437 GYCIRFLDDLLARYGGDYPRRTELT 461


>gi|284154388|gb|ADB78295.1| DNA gyrase [Bacillus sp. B-51135]
 gi|284154390|gb|ADB78296.1| DNA gyrase [Bacillus sp. B-51136]
 gi|284154416|gb|ADB78309.1| DNA gyrase [Bacillus sp. B-51150]
 gi|284154420|gb|ADB78311.1| DNA gyrase [Bacillus sp. B-51152]
 gi|284154432|gb|ADB78317.1| DNA gyrase [Bacillus sp. B-51159]
 gi|284154456|gb|ADB78329.1| DNA gyrase [Bacillus sp. B-51175]
 gi|284154460|gb|ADB78331.1| DNA gyrase [Bacillus sp. B-51177]
 gi|284154468|gb|ADB78335.1| DNA gyrase [Bacillus sp. B-51181]
 gi|284154500|gb|ADB78351.1| DNA gyrase [Bacillus sp. B-51199]
 gi|284154512|gb|ADB78357.1| DNA gyrase [Bacillus sp. B-51205]
 gi|284154530|gb|ADB78366.1| DNA gyrase [Bacillus sp. B-51214]
          Length = 189

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/420 (21%), Positives = 180/420 (42%), Gaps = 32/420 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 650  DHTLSKITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 708

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+A++   +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 709  ELAGHVSGMTA--YQHGDASLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLQGGSDCASA 766

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 767  RYIYTRLSPFARRVYHSHDDPLLTYNED-DGEKIEPEIYMPVVPMILVNGTDGIGTGWSS 825

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V+    ++D  +I              P      G  G        R   
Sbjct: 826  SIPNYNPEDIVENLRRMMDGEEIK-------------PMQPWFRGFNGEVTDMGGDRYKF 872

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 S I K +GD+E + +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 873  -----SGIIKETGDKE-VEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHHK 926

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +S+ + N+VA +  G   +   +  ILK F   
Sbjct: 927  VHFVIQMDEKHMTAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYAGVDDILKEFYTI 986

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   RR +Y L++ +     L   A  V  + +   ++           EL ++++  
Sbjct: 987  RLKYYERRKQYQLSEMQRELDRLSNQARFVQMIIDG-DLVVSKKKKSALVAELKEKNFKP 1045


>gi|284154452|gb|ADB78327.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154454|gb|ADB78328.1| DNA gyrase [Bacillus sp. B-51174]
          Length = 189

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G G FGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGKFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 115/586 (19%), Positives = 213/586 (36%), Gaps = 54/586 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                     ++    V  +D +    + +++   L R+IP + DGLKP  R+ILF   + 
Sbjct: 655  TNFQPGTYIDQQEKRVRYSDFINKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKR 713

Query: 64   GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGS 119
                  K  + +    E    +H  G  ++   +  MAQ++    ++ L+   GQ    +
Sbjct: 714  NFVKEAKVAQFSGYVSEHSAYHH--GEQSLASTIIGMAQNFVGSNNINLMFPGGQFGTRA 771

Query: 120  VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   A+ RY   +L      +        +++  N DG   EP       P VLVNG 
Sbjct: 772  QGGKDAASPRYIFTKLSHITRSIFPKDDDILLNYL-NEDGQSIEPTWYMPILPMVLVNGS 830

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IK 238
             GI  G +T IP +N  ++V     +++                  P      G  G I+
Sbjct: 831  EGIGTGWSTFIPNYNPRDIVANLRRLLNEEST-------------VPMHPWYRGFKGSIE 877

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVD 295
                T            IE     R  + +TE+P   +  +    LE +     + ++  
Sbjct: 878  KTVNTKVVGSTYTVTGIIEVVDNSR--LRITELPIRRWTGDYKEFLESLGPDKNKDKVPF 935

Query: 296  IADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            I D+  + D +   + I+L  G      +  L + ++ T+     ++++   NG   +  
Sbjct: 936  IEDVTAQGDNEDIYIEIQLSEGNMNIAKEEGLVKKFKLTTTIGTSNMHLFDSNGKIRKYD 995

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T   IL+ F   R E  V+R + LL   +     L      +  + +   II  +     
Sbjct: 996  TPEQILEEFFQLRLEFYVKRKEALLKNIKLELKKLENKVRFIRCVVDN-EIIVNNRKRAD 1054

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGL 468
               EL Q++++    K        +      +     +E         +L + +  LT  
Sbjct: 1055 LFLELRQKNFDPFPKKKKRAEPAAAGALEEENEENPEAEAAEPSDYEYLLAMPIGTLTLE 1114

Query: 469  GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               ++  E   L  +++E  +  +S   L     ++L + + ELD          LLD  
Sbjct: 1115 KIQELIAEKQKLVDDVEELKN--TSPKSLW---LKDLDAFEKELD----------LLDQM 1159

Query: 529  DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            D     + +  +     G  K  P    + Q+RG K  S   ++ E
Sbjct: 1160 DLSEEEQREKRIKDGKKGRSKAAP----KKQQRGKKAGSKAAVKKE 1201


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
            magnipapillata]
          Length = 1323

 Score =  214 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 105/506 (20%), Positives = 190/506 (37%), Gaps = 45/506 (8%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  +      EKG  +V+  D +    + ++ N    R+IP L DG KP  R++LF  M+
Sbjct: 667  EAGLPEVYLYEKGTRTVTYQDFINKELILFS-NTDNERSIPSLVDGFKPGQRKVLFTCMK 725

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNF 117
                 +K+ VK A+++G V     + HG  ++   +  +AQ++    +L +LL  GQ   
Sbjct: 726  RN---DKREVKVAQLAGSVAELSAYHHGEMSLMGTIVNLAQNFVGSNNLNVLLPIGQFGT 782

Query: 118  GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
              V G   A+ RY    +      +  +     + +  + D    EP   C   P  LVN
Sbjct: 783  RHVGGKDSASPRYIFTMMSSLTRLVFPEKDDAVLTYLFD-DNQKIEPEWYCPIIPMCLVN 841

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +T IP  ++ ++V+    +I+  +            P FP+     G    
Sbjct: 842  GAEGIGTGYSTKIPNFDIRDIVENVKRMINGEE----------PQPMFPSYKDFTG---- 887

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIV 294
                  G    + +G  +I     D   I +TE+P +    A  E + +      EK   
Sbjct: 888  -EIVQEGDQKFICQGTINII----DETTIEITELPVRTWTQAYKETVLDVYLYGNEKSPP 942

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPER 351
             I D ++       + VI +            L++   L S  +++ + L    G   + 
Sbjct: 943  CITDYKEYHTDSTVKFVITMTPEQMVKAEEEGLHKKFKLLSSINLSCMVLFDEFGCIKKY 1002

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             +   I+KAF   R      R K++L         L   A  +    E   II    +  
Sbjct: 1003 ESPTEIMKAFFNVRMAKYNERKKFILGMLEAECSKLENQARFILEKIEGKIIIENR-SKR 1061

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT---------MYLSEVQTRAILELRL 462
                 L++R + +  +K     +D S +                  LS      +L + +
Sbjct: 1062 DVITTLVERGYVSDPVKAWKAEVDKSGHLEDDSEAPTTDVASSSSSLSGPDFAYLLSMAI 1121

Query: 463  ARLTGLGRDDIRNELNSLGIEIKECL 488
              L+   ++++ N+ +    E+    
Sbjct: 1122 MSLSREKKEELLNQRDEKKKELNALK 1147


>gi|47419990|gb|AAT27347.1| DNA gyrase A [Campylobacter coli]
          Length = 500

 Score =  214 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 148/590 (25%), Positives = 266/590 (45%), Gaps = 128/590 (21%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RR
Sbjct: 2   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRR 61

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +            
Sbjct: 62  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------ 109

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL 
Sbjct: 110 --------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILK 155

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT+          
Sbjct: 156 SETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI---------- 205

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                                                   +  G++ +    +       
Sbjct: 206 ----------------------------------------THRGYIKRVPSKQYEKQKRG 225

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GK  +        + I +        ++ + L  V       V+  K+ +  +  +  
Sbjct: 226 GKGKLAVTTY---DDDFIESFFT----ANTHDTLMFVLIEDSFMVKVYKIPEGSRTAKGK 278

Query: 673 --KIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                + L + ++I+++   T  ++   +   TK G   R  +S  +      SVGV+ I
Sbjct: 279 AVVNLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNI---RSVGVKAI 335

Query: 728 SLAKGDQVISMAIV----------LHADADYDERICY----------------------M 755
           +L + D++++  IV          L  D+  DE                          +
Sbjct: 336 NLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCI 395

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K   A+ R I   +  +T++K     +  +       ++  EQ IL++S KG GKRT++ 
Sbjct: 396 KFPLAKVREIGRVSRGVTAIKFKEKNDELVG---AVVIENDEQEILSISAKGIGKRTNAG 452

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           ++R+ +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV
Sbjct: 453 EYRLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRV 500



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 35/244 (14%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---D 747
             EN ++  T  G   R P S       R   G   ++    D + S       D     
Sbjct: 197 PNENMVVTITHRGYIKRVP-SKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFV 255

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             E    +K         +   + + +L N  + E  ++     +   + + +   ++ G
Sbjct: 256 LIEDSFMVKVYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFD-ENKSLCFFTKNG 314

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---------------- 851
             KRT+  ++   N    G++A ++ + +E+   + V    + +                
Sbjct: 315 IVKRTNLSEY--QNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNS 372

Query: 852 -----------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRE 899
                       +  V+ KG  I+ P+ ++R   R ++GV       K++ +V    I  
Sbjct: 373 DENLIESIKGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEN 432

Query: 900 SEIV 903
            E  
Sbjct: 433 DEQE 436



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 104/306 (33%), Gaps = 66/306 (21%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DE++++   + +N     + + +     + A 
Sbjct: 59  IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQAN 118

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            +   +     R   L +      +A ++   A  DE +     +    R    + +   
Sbjct: 119 AILDMKLG---RLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF 175

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV- 832
            +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A    
Sbjct: 176 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 235

Query: 833 ------------------------------------SKINEIGALVAVFPVNDNDQIILV 856
                                               S+  +  A+V +  +  +++I+ +
Sbjct: 236 DDDFIESFFTANTHDTLMFVLIEDSFMVKVYKIPEGSRTAKGKAVVNLINLQADEKIMAI 295

Query: 857 ---------------SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIR 898
                          +  G + R  ++E   IR       GV   +  +++ +V+   ++
Sbjct: 296 IPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSV-----GVKAINLDENDELVTAIIVQ 350

Query: 899 ESEIVD 904
             E  +
Sbjct: 351 RDENEE 356


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 106/531 (19%), Positives = 205/531 (38%), Gaps = 52/531 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 694  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 752

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 753  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 809

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 810  LHGGKDAASPRYIFTMLSSLAR-LFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 867

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 868  AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 913

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 914  -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 968

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 969  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1028

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            T+  ILK F   R      R ++L+     +   +       +  +   + I   S   +
Sbjct: 1029 TVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK--K 1086

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
               + L+QR + +  +K   +  + ++    +      S   +          IL + L 
Sbjct: 1087 DLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLW 1146

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             LT    +++  + ++ G ++ +      S S L    K++L +  +ELD 
Sbjct: 1147 SLTKEKVEELIKQRDAKGRDVNDLKR--KSPSDLW---KEDLAAFVEELDK 1192


>gi|224458668|gb|ACN43197.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 239

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 114/264 (43%), Positives = 166/264 (62%), Gaps = 26/264 (9%)

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +E+I+VTE+PYQVNK  ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+V
Sbjct: 1   KERIIVTELPYQVNKGNLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANV 60

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+ RRT Y L KA  
Sbjct: 61  ILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEA 120

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAH+L GL +A+ +LD V+ +IR S   E AR  L+++                      
Sbjct: 121 RAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ---------------------- 158

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II+
Sbjct: 159 ----FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIR 214

Query: 503 QELLSVKDELDTPRRTRIVEGLLD 526
           +EL  +K+  +  RRT IV   L+
Sbjct: 215 EELTEIKERFNDERRTEIVTSGLE 238


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
            cuniculus]
          Length = 1181

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 109/513 (21%), Positives = 200/513 (38%), Gaps = 61/513 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ E+V+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVINGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ ILK F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIK--DLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+  +  + +  D     + S     S  T          
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTEKETEKSDSVTDSGPTF-------NY 1127

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +L++ L  LT   +D++  + N    E++    
Sbjct: 1128 LLDMPLWYLTKEKKDELCRQRNEKEQELETLKR 1160


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 121/537 (22%), Positives = 213/537 (39%), Gaps = 63/537 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 711  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCCKR 769

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 770  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVSLLQPIGQFGTR 826

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VLVNG
Sbjct: 827  LHGGKDAASPRYIFTMLSPLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLVNG 885

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  IP ++  E+V+    ++D  D            P  P      G     
Sbjct: 886  AEGIGTGWACKIPNYDTREIVNNVRRMLDGLD----------PLPMLPNYKNFKG----- 930

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+   V+ G    E    DR  + +TE+P +       E++ E +    EK    
Sbjct: 931  AIQELGQNQYVVSG----EIYVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTEKTPAL 986

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++     A      L++   LQ+  + N + L  +     +  
Sbjct: 987  ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYE 1046

Query: 353  TLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVA----NL 397
            T+  ILK F   R      R ++           L N+AR     + G          +L
Sbjct: 1047 TVQDILKEFFDLRLNYYNLRKEWLAGILGAESTKLNNQARFILEKIQGKIAIENKSKRDL 1106

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +++    +  +P  A     +    A++ +++ +L DDSS + GS      +      I
Sbjct: 1107 IQLLVQRGYESDPVKAW---KEAQEKAAEEEEMQNLNDDSSSSSGSTSGPDFN-----YI 1158

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
            L + L  LT    +DI  + +S G ++ +      S S L    K++L +  +ELD 
Sbjct: 1159 LNMSLWCLTKEKVEDIIKQRDSKGKDLNDLKR--KSPSDLW---KEDLAAFVEELDK 1210


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
            [Canis familiaris]
          Length = 1533

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/522 (20%), Positives = 202/522 (38%), Gaps = 59/522 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 681  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 738

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 739  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 796

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 797  GGKDSASPRYIFTMLSPLARLLFPPKDDQTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 855

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 856  GIGTGWSCKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFRGTIEELAP 905

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 906  NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 955

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 956  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1015

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1016 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1075

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++  +  +        D     +      +L
Sbjct: 1076 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFN-----YLL 1130

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++    N    E++       S + L   
Sbjct: 1131 DMPLWYLTKEKKDELCKLRNEKEQELETLKR--KSPTDLWKE 1170


>gi|28916612|gb|AAO59539.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 197

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 157/196 (80%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDGS  +PVVL +R PN+LVNG  GIAVGMATNIP H LGE++DG +A  +N
Sbjct: 2   DTIDYQDNYDGSEGDPVVLPSRLPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAGSEN 61

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 62  PGIPIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 121

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY
Sbjct: 122 TELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLY 181

Query: 329 RYTSLQSLFSVNMVAL 344
           + T+LQ+ F +N++AL
Sbjct: 182 KQTALQTSFGINLLAL 197


>gi|284154526|gb|ADB78364.1| DNA gyrase [Bacillus sp. B-51212]
          Length = 189

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + I++TS  +E+IVVT
Sbjct: 121 DITISELMEFIPGPDFPTAGKILGRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|284154402|gb|ADB78302.1| DNA gyrase [Bacillus mojavensis]
 gi|284154474|gb|ADB78338.1| DNA gyrase [Bacillus mojavensis]
 gi|284154496|gb|ADB78349.1| DNA gyrase [Bacillus mojavensis]
 gi|284154510|gb|ADB78356.1| DNA gyrase [Bacillus mojavensis]
 gi|284154566|gb|ADB78384.1| DNA gyrase [Bacillus mojavensis]
 gi|284154634|gb|ADB78418.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|29602633|gb|AAO85703.1| GyrA [Campylobacter jejuni]
          Length = 162

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/161 (60%), Positives = 123/161 (76%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 2   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 162


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
            [Canis familiaris]
          Length = 1532

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/522 (20%), Positives = 202/522 (38%), Gaps = 59/522 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSPLARLLFPPKDDQTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDIREVVNNIRRLMDGEE----------PLPMLPSYKNFRGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++  +  +        D     +      +L
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNENEAEKSDSVRDSGPTFN-----YLL 1129

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++    N    E++       S + L   
Sbjct: 1130 DMPLWYLTKEKKDELCKLRNEKEQELETLKR--KSPTDLWKE 1169


>gi|203283964|ref|YP_002221704.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
 gi|201083407|gb|ACH92998.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
          Length = 627

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/507 (26%), Positives = 230/507 (45%), Gaps = 57/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  M    + + L IE QGNFG+ + GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNM----ANKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFEVL--YSKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +      L         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILRAVKSELLGEAYKL--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
            T  D + I++ E+P+     +++  I   +R+   ++  I D   E+      + + L 
Sbjct: 216 PTD-DNKAILIKELPFGETTESLIASIERAIRKNYIKVSSINDFTTEN----VEIELTLP 270

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A+ I+ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++V+    + 
Sbjct: 271 RGVYANEIIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIKFHAEHLQKVLKMELEL 330

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K  ++  +       +    ++ +I+            +M       D      ++D
Sbjct: 331 ERSKILEK--IFSKTLEQIFIEHKIYKILETISKESDVVDIVMSEIVKYGDRFSRKIVLD 388

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D                    +L++ + +++    D    ++  L     E   + S+  
Sbjct: 389 D-----------------IENLLKIPIRKISMFDIDKNNKDIQILSK---ELKSVESNIE 428

Query: 496 RLLGIIKQELLSVKDELDT--PRRTRI 520
            +       +  +  +      R+T I
Sbjct: 429 SIKNYAINFIDKLLAKYSKMYHRKTEI 455


>gi|47419988|gb|AAT27346.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 142/588 (24%), Positives = 260/588 (44%), Gaps = 133/588 (22%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT + L 
Sbjct: 4   MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQ 63

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +                  
Sbjct: 64  KARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------------ 105

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L 
Sbjct: 106 --------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLE 157

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I+ EL  +K + D  R T+I +   D++ ED I  E+MVVT+                
Sbjct: 158 NLIRDELKEIKSKFDVLRITQIEDDYDDIDIEDLIPNENMVVTI---------------- 201

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                                             +  G++ +    +        +GK  
Sbjct: 202 ----------------------------------THRGYIKRVPSKQYEKQKRGGKGKLA 227

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN-----VRRNKLSDFIQINRSGK 673
           +        + I +        ++  +  ++F T  G      V +          ++  
Sbjct: 228 VTTY---DDDFIESFF------TANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVV 278

Query: 674 IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             + L + ++I+++   T  ++   +   TK G   R  +S  +      SVGV+ I+L 
Sbjct: 279 NLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNI---RSVGVKAINLD 335

Query: 731 KGDQVISMAIV----------LHADADYDERICY----------------------MKHM 758
           + D++++  IV          L  D+  DE                          +K  
Sbjct: 336 ENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMCIKFP 395

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
            A+ R I   +  +T++K     +  +       ++  EQ IL++S KG GKRT++ ++R
Sbjct: 396 LAKVREIGRVSRGVTAIKFKEKNDELVG---AVVIENDEQEILSISAKGIGKRTNAGEYR 452

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           + +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV 
Sbjct: 453 LQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVD 498



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 97/294 (32%), Gaps = 86/294 (29%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  T    + ++  T
Sbjct: 193 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 252

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  I+L   +++  MAI+   D D ++ +C+   
Sbjct: 253 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLINLQADEKI--MAIIPTTDFDENKSLCF--- 306

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                         ++ G  KRT+  ++
Sbjct: 307 ---------------------------------------------FTKNGIVKRTNLSEY 321

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND-------------------------- 851
              N    G++A ++ + +E+   + V    + +                          
Sbjct: 322 --QNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKG 379

Query: 852 -QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
             +  V+ KG  I+ P+ ++R   R ++GV       K++ +V    I   E  
Sbjct: 380 KMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQE 433



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 104/307 (33%), Gaps = 67/307 (21%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DE++++   + +N     + + +     + A 
Sbjct: 55  IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQAN 114

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            +   +     R   L +      +A ++   A  DE +     +    R    + +   
Sbjct: 115 AILDMKLG---RLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIKSKF 171

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV- 832
            +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A    
Sbjct: 172 DVLRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 231

Query: 833 -------------------------------------SKINEIGALVAVFPVNDNDQIIL 855
                                                S+  +  A+V +  +  +++I+ 
Sbjct: 232 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMA 291

Query: 856 V---------------SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERI 897
           +               +  G + R  ++E   IR       GV   +  +++ +V+   +
Sbjct: 292 IIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSV-----GVKAINLDENDELVTAIIV 346

Query: 898 RESEIVD 904
           +  E  +
Sbjct: 347 QRDENEE 353


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/536 (20%), Positives = 201/536 (37%), Gaps = 65/536 (12%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            +S  D +    + ++ +    R+IP L DGLKP  R++LF  ++ 
Sbjct: 813  HGLPEQYLYGSQARHLSYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCLKR 871

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV 120
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  L +++  G FG+ 
Sbjct: 872  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTR 928

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VLVNG
Sbjct: 929  INGGKDAASPRYIFTMLSPLAKLLFPAVDSNLLKFLYD-DNQKVEPEWYIPIIPMVLVNG 987

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  IP +++ E+V+    +     +     ++++            G  G+ 
Sbjct: 988  AEGIGTGWACKIPNYDVREIVNNINRM-----LSRQEPLQMLPS--------YKGFKGV- 1033

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
              +  G+   ++ G    E +  D+  + +TE+P +    A  E + E +    +K    
Sbjct: 1034 -IHELGQNQYLVSG----EVSVIDKNTVEITELPVRTWTQAYKESVLEPMLQGSDKTPAL 1088

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV------------- 342
            I+D ++       + ++ +     A      L++   LQS  + N +             
Sbjct: 1089 ISDYKEYHTDTTVKFLVRMSEEKLAQAEAAGLHKVFKLQSSLTCNSMVTACFHRPEHVLF 1148

Query: 343  ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLA 391
               G      ++  ILK F   R      R  +L+           N+AR     + G  
Sbjct: 1149 DHMGCLKRYESVQDILKEFFELRLHYYKLRRDWLVGSLGAEAAKLSNQARFVLEKIEGKI 1208

Query: 392  -IAVANLDEVVRI---IRFSPNPETARRELMQ---RSWNASDIKDLIDLIDDSSYTIGSD 444
             I   +  E++R+     F  +P  A     +   R + +          D+ + +  S 
Sbjct: 1209 SIENKSKRELIRMLVQKGFESDPVAAWTRAQEKELRRFQSKREPRQAQEEDEGNDSDSSL 1268

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
             +   S      IL + L  LT    +++  + +    E+ E      S   L   
Sbjct: 1269 DSGSSSGPNFNYILNMPLWCLTKEKVEELLKQRDLKRGELNELQR--KSPEDLWKE 1322


>gi|255349048|ref|ZP_05381055.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70]
 gi|255503586|ref|ZP_05381976.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70s]
 gi|255507266|ref|ZP_05382905.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D(s)2923]
          Length = 490

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 137/507 (27%), Positives = 221/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP VL A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDVLAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP+G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------FPDFPSGGTM-----DASDYQAGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSAIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 172/488 (35%), Gaps = 30/488 (6%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              V   D +    + ++    L R+IP + DG KP  R++LF   +  ++ + K  + + 
Sbjct: 702  DDVGYDDFVNKELILFSR-ADLMRSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSG 760

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G A++   +  +AQD+  S  + L+   G FG+    G   A+ RY  
Sbjct: 761  YVSEHSAYHH--GEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIF 818

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL      +  +     +D+  N DG   EP       P VLVNG  GI  G +T+IP 
Sbjct: 819  TRLAPICRAIFPEADDALLDYI-NEDGQVIEPDYYLPILPLVLVNGADGIGTGWSTSIPN 877

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +N  ++ D    ++++ +               P      G   +      G     I G
Sbjct: 878  YNPRDLTDNIRRLLNDEE----------PERMHPWYRNFNGS--LTEEIVKGEIRYHISG 925

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI---VDIADLRDESDRQGYR 309
               I     +   ++++E+P +       E +  ++  K       I D ++        
Sbjct: 926  AYEI----VNETTLMISELPIRSWTTDYKEFLENMMNPKEKNATPFITDYKEHHTDTTVH 981

Query: 310  VVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             V+ +     A      + + ++ +S  S  +++    NG   +      I+KAFV  R 
Sbjct: 982  FVVTMTPEKMAQAQKEGIEKKFKLSSKVSTSNMHCFDANGGIQKYSNPEEIMKAFVPLRL 1041

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   +R   L+ +A      L      +  + +    I                    + 
Sbjct: 1042 KAYEKRRTMLIRQAESELKRLANKTRFILAVVDEKLSIGRKKKSALVEELESLGFDKMTK 1101

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
             + +   ID+ +           S      +L + L  LT    D++  E  S   E+  
Sbjct: 1102 TQKVSAAIDEIAEGDEEAADAVESGANYDYLLSMPLWNLTQEKVDELVTEKESKEEEVAA 1161

Query: 487  CLDILSSR 494
                    
Sbjct: 1162 LHATTDKE 1169


>gi|325474427|gb|EGC77614.1| topoisomerase IV [Treponema denticola F0402]
          Length = 700

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/504 (26%), Positives = 224/504 (44%), Gaps = 59/504 (11%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
            +   +L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G  M 
Sbjct: 4   FLIRIFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM- 59

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFL 142
           KYHPHG+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+   A  +
Sbjct: 60  KYHPHGDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNDFAKTI 115

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
                    D+  +YDG  +EP+   A+ P +L  G  GIAVGM+T I  HN+ E+++  
Sbjct: 116 F--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAE 173

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            A +      L         PDFPTG +I       + Y  G G +++R        + D
Sbjct: 174 KAFLSGKSFAL--------FPDFPTGGLI-----DVSEYEDGLGKVLVRAK----LDTSD 216

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKRGASA 320
            ++IV+ E+P+     +M+  I    +    +I +I+D       +   + ++L RG  +
Sbjct: 217 EKRIVIRELPFGSTTESMINSIEAASKAGKVKISEISDY----TGEKVEIELKLPRGVYS 272

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             +++ LY +T  +     N++ +    P + T+  I+K       +++    +Y     
Sbjct: 273 ADVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERAML 332

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +R H+     I +       RI +     +TA   +          K  +         
Sbjct: 333 TERLHLRTLERIFIEE-----RIYKKIETMKTAEGVINAVIKGFVPFKKELIR------- 380

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   ++E     +L++ + R++    +  R E+  +   +KE   +L +   L G 
Sbjct: 381 -------DVTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAKLLKN---LKGY 430

Query: 501 IKQELLSVKDELDTP---RRTRIV 521
               L  +  +L      R+T I 
Sbjct: 431 AISVLDGIAAKLPAEEFKRKTEIT 454


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 99/535 (18%), Positives = 217/535 (40%), Gaps = 44/535 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            ++   S++ +D +    + +++     R+IP + DGLKP  R++++  ++  +  ++K  
Sbjct: 806  DQSTKSITYSDFVNKELILFSM-ADNMRSIPSVVDGLKPGQRKVIYTCLKKNIVKDQKVF 864

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    ++   +H  G+A+++  +  +AQ++  S  +  +E  GNFGS    G   A+ 
Sbjct: 865  ELAGSVSKLAAYHH--GDASLHQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASA 922

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  + + L +  ++   + +GS  EP       P VL+NG  GI  G +T
Sbjct: 923  RYIFTRLSPFARRVFNPLDEPVLENNID-EGSVIEPKNYAPIVPMVLINGADGIGTGWST 981

Query: 189  NIPTHNLGEVVDGC-VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            +IP +N  +VV+     +      + + L      P         G  G      +  G 
Sbjct: 982  SIPNYNPVDVVNNLKRRMGRLAGHENEEL------PFESMIPWFRGWKGTPEP-DSVPGR 1034

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQ 306
                G+  I +   +  +IVV+E+P ++       K+ E++R ++    I D ++ +D +
Sbjct: 1035 YRFNGI--IYQDDRNPNEIVVSELPVRMWTDDFKAKLEEVIRAEKSPSWIKDYKEFNDHR 1092

Query: 307  GYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                VI+++       +   L   ++ +      ++    +NG       +  IL+ F  
Sbjct: 1093 NVHFVIQMEDKHVQAAVDEGLIDRFKLSKTVGTTNLVAFDINGQIRRYEKVEDILEEFFN 1152

Query: 364  FREEVVVRRTKYLL-----------NKARDRAHVLVG----LAIAVANLDEVVRIIRFSP 408
            +R  +   R K+ L           N+ R    ++ G           + E +R   +  
Sbjct: 1153 YRLNMYGLRKKHWLGVYHTEFRKLNNQYRFVQEIMDGKLVVSKKKKDVVVEELRARSYEA 1212

Query: 409  NPETARRELMQRSWNASDIKDLIDLIDDSSYTIG---SDGTMYLSEVQTRAILELRLARL 465
             P+ +      ++ +  D +D  ++   ++       S      ++ +   + +   A+ 
Sbjct: 1213 FPKESSDPKKAKTKDDDDNEDEDEIDGGTARDYDYLLSMPIWSFTQERLDRLKKQIDAKK 1272

Query: 466  TGLGRDDIRNELN----SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
                  D+++E +     L   + E  + L   S +   I++       ++   R
Sbjct: 1273 AQYDELDVKSEKDLWCFDLDEFLAEWENQLQLDSEIQTTIRRMGRRTSKKIGAGR 1327


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/525 (21%), Positives = 201/525 (38%), Gaps = 53/525 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +S TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 779  DHSVEKISYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYAMFKRNVRKDAKVV 837

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            +       + G  + HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 838  ELGGYVSGMTG--YQHGEVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCASA 895

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        +    + DG   EP V     P VL+NG  GI  G +T
Sbjct: 896  RYIHTRLSPFARRIFSTADDPLLKHNVD-DGKIIEPEVFVPVVPLVLINGADGIGTGWST 954

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA---YATGR 245
            +IP  N  ++VD    ++D               P  P      G TG   A        
Sbjct: 955  SIPNFNPEDIVDNLKRLMDGE-------------PVVPMKPWFRGFTGEVTAAGDRYKFS 1001

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESD 304
            G I   G   +E          +TE+P +       +K+ E+++ ++    I D +D + 
Sbjct: 1002 GIIKQTGDYEVE----------ITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKDYNT 1051

Query: 305  RQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
                  +I++        + + L   ++ +   +  ++      G   +  T   IL+AF
Sbjct: 1052 HSKVHFIIQMDEKHMKKAVEDGLEERFKLSRTITTSNMVAFDAEGRITKYNTAEDILEAF 1111

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R     +R +++L +       L   A  V  + +   +I   P  +   +EL +++
Sbjct: 1112 FAVRIRFYEKRKQFMLAQLHKELEKLTNQARFVQMIIDGKLVIAKKPKAKL-MQELKEKA 1170

Query: 422  WN--ASDIKDLIDLIDDSS-------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            +      +    +  D+ +             G+     +   A+  L   R+  L R  
Sbjct: 1171 FKPFPKGVDAAKEGEDEPTVENDESEEEEKKSGSDGYDYLLGMALWSLTQERVAKLLRQM 1230

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
               EL  +   IK   + L  R  L   I +    ++DE    RR
Sbjct: 1231 GDKEL-EIDALIKLSKEDLWRRD-LDEFIAEWRYQLEDE---ERR 1270


>gi|323694737|ref|ZP_08108895.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501174|gb|EGB17078.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 412

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/431 (26%), Positives = 196/431 (45%), Gaps = 28/431 (6%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+A+ G +PE  TL GILK ++ F+ E   R+   LL K  ++  +  GL  A   +D +
Sbjct: 1   MLAIAGGRPETLTLKGILKNYLDFQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLI 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + I+R S N + A+  LM+   + S+I       D+ +  +        +E Q  AILE+
Sbjct: 61  IAILRGSKNLKDAKACLME--GDISNIHFKTPGFDEDARKL------RFTEKQASAILEM 112

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L GL    +  E      +IKE   ILSS+  +  +IK++L  +K E  TPRRT I
Sbjct: 113 RLYKLIGLEILALEKEYKETLRKIKEYEKILSSKLTMDDVIKKDLEEIKTEFATPRRTLI 172

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            +G   + DE  +   ++V  +   GY K V  + Y   +   +G +            +
Sbjct: 173 EDGKEAVYDETAVEIREVVFVMDKFGYGKLVDRATYDRNQETIEGENP----------HV 222

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPED 639
                   +  F+  G +++ K   +P G  + +G  + N+   +   ER   I+    +
Sbjct: 223 IPCLNTDKICLFTDTGLLHQVKASDIPFGKMRDKGTPVDNLCKFDGTKERPIFII----N 278

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
            S+     ++FATK   V+     +F   NR    A KL   D ++S++      + +L 
Sbjct: 279 ASALVGRRLLFATKEAMVKLVPGEEFETNNR-MVAATKLQDGDMVVSIQLTDGRTEAVLQ 337

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  G  +RF +  I     +NS GVRGI L +G+++     V     D ++ + Y +   
Sbjct: 338 TTNGVFLRFDLEEISTL-KKNSKGVRGIKLGRGEEL---EQVYLLGTDSEQTVMYKEKQV 393

Query: 760 AQRRLISGDTE 770
              RL  G  +
Sbjct: 394 HLNRLKIGKRD 404



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            + +L  +++   K     +F  +NR          +K+ +   +V++   +   + +L 
Sbjct: 284 GRRLLFATKEAMVKLVPGEEFETNNR------MVAATKLQDGDMVVSIQLTDGRTEAVLQ 337

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +  G  +R  + EI    + +KGV      + E +
Sbjct: 338 TTNGVFLRFDLEEISTLKKNSKGVRGIKLGRGEEL 372


>gi|190888710|gb|ACE95980.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888736|gb|ACE95993.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888738|gb|ACE95994.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888740|gb|ACE95995.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888742|gb|ACE95996.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888744|gb|ACE95997.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888746|gb|ACE95998.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 122/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|203287507|ref|YP_002222522.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084727|gb|ACH94301.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 627

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 132/507 (26%), Positives = 230/507 (45%), Gaps = 57/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  M    + + L IE QGNFG+ + GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNM----ANKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFEVL--YSKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +      L         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILRAVKSELLGEAYKL--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
            T  D + I++ E+P+     +++  I   +R+   ++  I D   E+      + + L 
Sbjct: 216 TTD-DNKAILIKELPFGETTESLIASIERAIRKNYIKVSSINDFTTEN----VEIELTLP 270

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A+ I+ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++V+    + 
Sbjct: 271 RGVYANEIIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIKFHAEHLQKVLKMELEL 330

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K  ++  +       +    ++ +I+            +M       D      ++D
Sbjct: 331 ERSKILEK--IFSKTLEQIFIEHKIYKILETISKESDVVDIVMSEIVKYGDRFSRKIVLD 388

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D                    +L++ + +++    D    ++  L     E   + S+  
Sbjct: 389 D-----------------IENLLKIPIRKISMFDIDKNNKDIQILSK---ELKSVESNIK 428

Query: 496 RLLGIIKQELLSVKDELDT--PRRTRI 520
            +       +  +  +      R+T I
Sbjct: 429 SIKNYAINFIDKLLAKYSKMYHRKTEI 455


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3) [Monodelphis
            domestica]
          Length = 1548

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/533 (20%), Positives = 205/533 (38%), Gaps = 58/533 (10%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    K    ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 681  LPEDYLYGKATKHLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 738

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 739  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 796

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 797  GGKDSASPRYIFTMLSPLARLLFPAKDDQTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 855

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G       
Sbjct: 856  GIGTGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTID---- 901

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
                    VI G   I     +   I ++E+P +       E++ E +    +K    I 
Sbjct: 902  -ELAPNQYVISGEVSII----NSTTIEISELPVRTWTQVYKEQVLEPMLNGTDKTPPLIT 956

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTL 354
            D R+       + ++++     A      L++   LQ+  + N + L  +     +  T 
Sbjct: 957  DYREYHTDTTVKFIVKMTEEKLAQAEHAGLHKVFKLQTNLTCNSMVLFDHVGCLKKYDTA 1016

Query: 355  IGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN----LDE 399
            + IL+ F   R +    R ++           L N+AR     + G  +        L +
Sbjct: 1017 LDILRDFFDLRLKYYGLRKEWLTGMLGAESAKLNNQARFILEKIEGKIVIENKPKKELIK 1076

Query: 400  VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
            V+    +  +P  A +E  Q+S   ++ +      +  +    S      +      +L+
Sbjct: 1077 VLIQRGYDSDPVKAWKEAQQKSPGDNEEETEESDNEKETEKSDSATDSGPTF---NYLLD 1133

Query: 460  LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            + L  LT   +D++  +      E++       S S L    K++L +  +EL
Sbjct: 1134 MPLWYLTKEKKDELCRQRTEKEQELENLKR--KSPSDLW---KEDLAAFVEEL 1181


>gi|75758773|ref|ZP_00738888.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904159|ref|ZP_04068254.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228930729|ref|ZP_04093707.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493783|gb|EAO56884.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828976|gb|EEM74635.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855244|gb|EEM99808.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 745

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 155/712 (21%), Positives = 275/712 (38%), Gaps = 86/712 (12%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
             +   Y+ YA  V+  RA+ D+RDGLKPV R  L+ M +   +   K  +     G  +
Sbjct: 46  QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEKAKDMIKSEQ----VGAGV 101

Query: 83  GKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSVDGD-PPAAERYTECRLQKAAH 140
            KYHPH   + Y++L +M + + +  + L+ G+G  G    +  PAA RYT  +  + A 
Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +   +    +D   N+D + + P VL A  P +L+    GIAVG +T  P+    +V +
Sbjct: 162 EMFTAMDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKT 259
                I +           +  PDF TG  I      ++    TG+GS + RG   I   
Sbjct: 220 LVREYIRDGKCST------MIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI--- 270

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD--LRDESDRQGYRVVIELKRG 317
             D + IVVTE+P  V     +EKI + + +  I  I      D + + G    I  +  
Sbjct: 271 --DGKNIVVTEVPQGVT----VEKIMKEIEKAEIQGITPNGYSDLTGKDGCYFEITCRAK 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
                +L +LY  TSLQ  F+ N++A+   K     + GI+  +V +R +V+ R+T+  L
Sbjct: 325 NRVQEVLMELYTKTSLQKKFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLDL 384

Query: 378 NKARDRAHVLVGLA--IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            K  + A    G    +A+    + +  +    +   A + + +      D+ + I    
Sbjct: 385 AKLVESAKYTKGFIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWI---- 440

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSS- 493
                                       RL     D    N+  +  IEI +    L + 
Sbjct: 441 -------------------------IKRRLNQFRNDNKYINQYANYQIEIAKLEKYLENI 475

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY-VKRVP 552
            + +L  + +  L V  +    RRT I   + ++E       E   + VS   Y +K   
Sbjct: 476 DTLILEDMDRFDLLVSKKH--ERRTEITNKVYEVETVKEDEIE---IPVSECYYQIKDGF 530

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L     +   G+G              +F   T+++++  SS G +++     +   +  
Sbjct: 531 LRKLHVKPTSGEGI-------------IFEGYTNSTIIALSSEGEIFRIYGNDINYLTGN 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QINR 670
             G  +     L   + +  I     DE  +     V   + G V     ++F+   I  
Sbjct: 578 DIGTYIPTYSGLANAQHVQLIWATVCDEKKY-----VLTYEDGFVGFLDTAEFLVGAIKS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                      D++  V    +++ I++ T   +              R + 
Sbjct: 633 KYLRNGISAHADKLTDVREYQEDSVIVVETHD-KLYACAHLDSIKMKSRTAR 683


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 99/497 (19%), Positives = 189/497 (38%), Gaps = 55/497 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++ +D +    + +++   L R++P + DGLKP  R+ILF   +       K  + +   
Sbjct: 493 ITYSDFINKELILFSL-ADLARSVPSMVDGLKPGQRKILFAAFKRNFTSQAKVAQFSGYV 551

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECR 134
            E    +H  G  ++   +  MAQ++  S  + ++   G FG  S  G   A+ RY    
Sbjct: 552 SEHSAYHH--GEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTS 609

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      +        ++F    DG   EP       P VLVNG  GI  G +T +P +N
Sbjct: 610 LTPLTRTIFPKPDDILLNFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYN 668

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             ++V     ++ +              P  P      G  G     A+    +      
Sbjct: 669 PRDIVTNLKHLLRDE-------------PLEPMDPWYKGFKGTIVKSASKESGVSYTVTG 715

Query: 255 HIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            +E+   +   I V E+P   +  +    LE +     + +   I D R+ +        
Sbjct: 716 IVEQV--NETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFE 773

Query: 312 IELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           I L     A+ +   L   ++ ++  S  ++N+   +G+  +  T   IL+ F   R E+
Sbjct: 774 ISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLEL 833

Query: 369 VVRRTK-------YLLNKARDRAHVLVGLAIAVANLDE--------VVRIIRFSPNPETA 413
            V+R +       Y L K  ++   ++G+      ++          ++   F+P P+ A
Sbjct: 834 YVKRKEVQVENLQYELLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKA 893

Query: 414 RR-ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +  +L     + SD+    +  D+     G     Y        +L + +  LT      
Sbjct: 894 KASDLPVVGGDGSDV----EADDEEKLNKGVRAGDY------EYLLSMPIGTLTLEKVQQ 943

Query: 473 IRNELNSLGIEIKECLD 489
           + NE + L  +++E   
Sbjct: 944 LCNERDKLEGDVEELKK 960


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 97/538 (18%), Positives = 194/538 (36%), Gaps = 62/538 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   K   
Sbjct: 717  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---KNEC 772

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 773  KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 832

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 833  ARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYS 891

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  ++++     ID             + P  P              Y   +G 
Sbjct: 892  SFIPNYNYKDIINNIKKYID-------------KEPLVPMVPW----------YKDFKGR 928

Query: 248  IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I   G S  E        D E + +TE+P +       E + EL+ +++   I D  D S
Sbjct: 929  IEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNS 988

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKA 360
              +     I++            L +   L+S  +   + L           + + ILK 
Sbjct: 989  SHEDVCFTIKMDPIKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPKLKLQRYASELDILKD 1048

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R      R  YL++K      ++      +  +     ++      +    EL ++
Sbjct: 1049 FCFHRLNAYTDRKNYLISKLEKEKRIISNKTKFILAIING-ELVVNKKKKKILVEELYRK 1107

Query: 421  SWNA---------SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             ++           +I +   L    +     +    ++      +L + +  LT    +
Sbjct: 1108 GYDPYKDIHKLKKEEIFEQELLDAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLEKVE 1167

Query: 472  DIRNELNSLGIEIKECLDI------LSSRSRLLGIIKQE------LLSVKDELDTPRR 517
            ++ ++L     E++    I      L    ++   I+ +           ++    R+
Sbjct: 1168 ELLSQLKEKEQELEILKSITVETMWLKDIEKVEEAIEFQRNVELANREESNKFKVARK 1225


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 202/537 (37%), Gaps = 63/537 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 834  HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 892

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 893  N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNVNLLQPIGQFGTR 949

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 950  LHGGKDAASPRYIFTMLSTLARLLFPSVDDNLLKFLYD-DNQRVEPEWYMPIIPMVLING 1008

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 1009 AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 1054

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 1055 -IQEIGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 1109

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I+D ++       + V+++            L++   LQ+  + N + L  +     +  
Sbjct: 1110 ISDYKEYHTDTTVKFVVKMTEEKLVQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYE 1169

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T+  ILK F   R      R ++L+           N+AR     + G           L
Sbjct: 1170 TVQDILKEFFDLRLNYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKRDL 1229

Query: 398  DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             +++    +  +P  A        W  +  K   +    +     S  +   S      I
Sbjct: 1230 IQMLVQRGYESDPVKA--------WKEAQEKAAEEEETQNQRDDSSSDSGTTSGPDFNYI 1281

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
            L + L  LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 1282 LNMSLWCLTKEKVEELIKQRDTKGRELNDLKR--KSPSDLW---KEDLAAFVEELDK 1333


>gi|190888720|gb|ACE95985.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888722|gb|ACE95986.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888724|gb|ACE95987.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888726|gb|ACE95988.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888728|gb|ACE95989.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888730|gb|ACE95990.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
            [Macaca mulatta]
          Length = 1481

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 200/524 (38%), Gaps = 63/524 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 647  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 704

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 705  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 762

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 763  GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 821

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 822  GIGTGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 871

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 872  NQYVISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 921

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 922  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 981

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 982  VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1041

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 1042 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTF-------NY 1094

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +L++ L  LT   +D++    N    E+        S S L   
Sbjct: 1095 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKE 1136


>gi|190888708|gb|ACE95979.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888718|gb|ACE95984.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 124/162 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|224534930|ref|ZP_03675499.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
 gi|224513870|gb|EEF84195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
          Length = 626

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 131/507 (25%), Positives = 234/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVRSELLGETYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++V+    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQVSISVNLLLLSERYPVVYTIKDLIKFHAAHLQKVLKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K  ++          +  +    +I +F                  S  ++++ +I 
Sbjct: 330 QKSKILEKI-----FYKTLEQIFIEKKIYKFLET--------------ISKEENIVSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 371 SEILRCKESFSREVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELRTINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T I
Sbjct: 428 SIKGYSINFIDLLLAKYSKDHQRKTEI 454


>gi|224458672|gb|ACN43199.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 235

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 112/259 (43%), Positives = 161/259 (62%), Gaps = 26/259 (10%)

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN L
Sbjct: 2   VTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNL 61

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L
Sbjct: 62  YKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHIL 121

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA+ +LD V+ +IR S   E AR  L+++                           
Sbjct: 122 EGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------F 155

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            L+E Q +AIL++RL RLTGL R+ I  E  +L   I E  DIL++  ++L II++EL  
Sbjct: 156 SLTEKQAQAILDMRLQRLTGLEREKIEEEYQTLVKLIAELKDILANEYKVLEIIREELTE 215

Query: 508 VKDELDTPRRTRIVEGLLD 526
           +K+  +  RRT IV   L+
Sbjct: 216 IKERFNDERRTEIVTSGLE 234


>gi|190888706|gb|ACE95978.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888712|gb|ACE95981.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888714|gb|ACE95982.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/162 (57%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVG 162


>gi|312147811|gb|ADQ30470.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi JD1]
          Length = 626

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 129/507 (25%), Positives = 228/507 (44%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K  ++          +  +    +I +           L          K+      
Sbjct: 330 QKSKILEKI-----FYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSR-- 382

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 383 ------------EVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKSINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T I
Sbjct: 428 SIRGYSINFIDLLLAKYSKEHQRKTEI 454


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 199/520 (38%), Gaps = 43/520 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 768  DHSVSKISYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 826

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 827  ELAGHVSGMTA--YQHGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCASA 884

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G ++
Sbjct: 885  RYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSS 943

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++VD    ++D  +               P      G TG       G    
Sbjct: 944  SIPNYNPEDIVDNLKRLMDGEETR-------------PMQPWFRGFTG--EVTDVGGDRF 988

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
               G+          +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 989  KFSGIIK----ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 1044

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
                 E    ++    L + ++ +   +  ++      G   +  T+  ILK F  +R +
Sbjct: 1045 LD---EKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTYRLK 1101

Query: 368  VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
               +R +Y L++ +     L   A  V  + +   ++         +    +       +
Sbjct: 1102 FYEKRKQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKAFPKV 1161

Query: 428  KDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNSLGI 482
             + +   ++       D      + +        +L + +  LT    + +R ++    +
Sbjct: 1162 AEAVKAGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRRQIGEKEV 1221

Query: 483  EIKEC-----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            E+         DI      L   I +    ++DE    R+
Sbjct: 1222 EVDALIKMSKEDIWKRD--LDDFIAEWRFQLEDEHRRQRK 1259


>gi|111114858|ref|YP_709476.1| DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 gi|216264054|ref|ZP_03436048.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
 gi|110890132|gb|ABH01300.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980098|gb|EEC20920.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
          Length = 626

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 130/507 (25%), Positives = 232/507 (45%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTLLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGETYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++V+    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKVLKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K          L        E + I           +++ +     S  ++++ +I 
Sbjct: 330 QKSKI---------LEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 371 SEVLRCKESFSREVLKEDIENLLKIPIRKISLFDIDKNSKDIKILNK---ELKIINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            +       +  +  +      R+T I
Sbjct: 428 SIKEYSINFIDLLLAKYSKEHQRKTEI 454


>gi|226321135|ref|ZP_03796676.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
 gi|226233427|gb|EEH32167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
          Length = 626

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 131/507 (25%), Positives = 235/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K          L    +   E + I           +++ +     S  ++++ +I 
Sbjct: 330 QKSKI---------LEKIFSKTLEQIFI----------EKKIYKLLETISKEENILSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 371 SEVLRHKESFSREVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKSINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T I
Sbjct: 428 SIRGYSINFIDLLLAKYSKEHQRKTEI 454


>gi|237805011|ref|YP_002889165.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273311|emb|CAX10226.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 490

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 221/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSAIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|190888716|gb|ACE95983.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 124/162 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLIYDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|89101241|ref|ZP_01174065.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89084047|gb|EAR63224.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 94/191 (49%), Positives = 128/191 (67%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G    K + K
Sbjct: 8   EKFRDLPLEDVLGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMHVEGNTNEKGFRK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++YDA+ RM+QDW +R  L+E  GN GS+DGDPPAA RYTE 
Sbjct: 68  SAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNFLVEMHGNNGSIDGDPPAAMRYTEA 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   +  LL D+ K TVDF PN+D +  EP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 128 RLSAISSELLRDIEKHTVDFIPNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATEIPPH 187

Query: 194 NLGEVVDGCVA 204
           +LGE++DG + 
Sbjct: 188 HLGEIIDGVIM 198


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1164

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 173/442 (39%), Gaps = 35/442 (7%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++ ++ ++ T+ +    + +++     R+IP + DG KP  R++LF   +  +
Sbjct: 735  FEPGTHLDQNVSQITYTEFINKELILFSM-ADNIRSIPSMVDGFKPGQRKVLFACFKRKL 793

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
               K  +K A++ G       + HG A++   +  +AQ++  S  + ++   G FG+   
Sbjct: 794  ---KAEIKVAQLGGYCSEHSAYHHGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRAS 850

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    ++K    +      + +++    DG+  EP       P VLVNG  
Sbjct: 851  GGKDAASARYIFTNVEKITRVIFPPADDNVLNYL-TDDGTQIEPEWYIPILPMVLVNGSS 909

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +++IP +N  ++V+     + N              P  P      G TG   +
Sbjct: 910  GIGTGWSSDIPNYNPVDIVNNLRRRLANE-------------PMEPMHPWFRGFTGQITS 956

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIAD 298
             A G+  ++       E    D + I +TE+P +V   +  E+I   +   +K    + D
Sbjct: 957  EAPGKYKVLG------EWDQPDEDTIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKD 1010

Query: 299  LRDESDRQGYRVVIELKR---GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
             R+         +I L      A     + ++++ ++  S+ ++     +G   +  T  
Sbjct: 1011 YREYHTETTVHFIISLTERGKDAIKKEGIEKVFKLSANLSITNMVCFDPSGKIKKYSTPE 1070

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL  F   R     +R +YL+N        L   A  V  + E   ++           
Sbjct: 1071 QILDDFYDVRLAYYQKRKEYLVNDLTLMYERLSNQARFVLMIIEKKLVVSNRK-KAEIVA 1129

Query: 416  ELMQRSWNASDIKDLIDLIDDS 437
            EL +  +    +K       D 
Sbjct: 1130 ELRKLEFGPFPVKAKPKTAGDP 1151


>gi|224531518|ref|ZP_03672150.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
 gi|224510983|gb|EEF81389.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
          Length = 626

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 132/507 (26%), Positives = 235/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ GG GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGGEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGETYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++      
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKIL------ 323

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              K          L        E + I           +++ +     S  ++++++I 
Sbjct: 324 ---KMELELQRSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVNIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
               +     +  + +     +L++ + +++    D    ++  L     E   + SS S
Sbjct: 371 SEVLSYKESFSREVFKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKSVNSSIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T I
Sbjct: 428 SIRGYSINFIDLLLAKYSKEHQRKTEI 454


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 207/536 (38%), Gaps = 66/536 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDVREVVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     +       S  T          
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKGDSVTDSGPTF-------NY 1127

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            +L++ L  LT   +D++    N    E+        S S L    K++L +  +EL
Sbjct: 1128 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLW---KEDLAAFVEEL 1178


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo
            abelii]
          Length = 1532

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 111/524 (21%), Positives = 200/524 (38%), Gaps = 63/524 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 681  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 738

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 739  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 796

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 797  GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 855

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ E+V+    ++D  +            P  P+     G    +  
Sbjct: 856  GIGTGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 905

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 906  NQYVISGEVAILNSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 955

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 956  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1015

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1016 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1075

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 1076 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTF-------NY 1128

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +L++ L  LT   +D++    N    E+        S S L   
Sbjct: 1129 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKE 1170


>gi|255311486|ref|ZP_05354056.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276]
 gi|255317787|ref|ZP_05359033.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276s]
          Length = 490

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 220/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSAIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 106/548 (19%), Positives = 198/548 (36%), Gaps = 62/548 (11%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
               +  +  +  ++ +D M    + ++      R+IP + DGLKP  R++LFG  +  + 
Sbjct: 677  QPGDYIDYAVDKMAYSDFMDKELIQFSRY-DNARSIPCVVDGLKPSQRKVLFGAFKRKLT 735

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
               K V+ +    E    +H  G  ++ D +  MAQD+  S  + L    G FGS    G
Sbjct: 736  SEIKVVQFSGYVSEHAAYHH--GEQSLNDTIIGMAQDFVGSNNINLFVPAGQFGSRLLGG 793

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY    L      +  +      ++    +G   EP       P VLVNG  GI
Sbjct: 794  KDAASPRYIYTYLSPITRLIFKEDDDLLCNYLVE-EGQSIEPEFYLPIIPMVLVNGAEGI 852

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  E+ +  +A ++N            + P+        G TG  + Y 
Sbjct: 853  GTGYSTKIPNYNPVEIANYIIAKLNNE-----------KPPEL--HPWWRGFTG--DIYK 897

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRD 301
              +G ++   ++ +     D    V+TE+P         + + E++  EK+   IAD ++
Sbjct: 898  RPKGYLIRGRITKV-----DDLTYVITELPIGRWTQDYKQILTEMMLPEKKAPVIADFKE 952

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQ---SLFSVNMVALNGYKPERFTLIGIL 358
                      + L    +  +    LY++  L+   +  + N+ +  G      +   I+
Sbjct: 953  NHTDTTVHFTVMLTPEQAQALQGQDLYKFFKLEAAITTSNFNLFSSTGQITHYASPQHII 1012

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
              F  FR      R  +LL K       L  +   +  + E   II   P  +   ++L+
Sbjct: 1013 DEFFEFRLPYYQERKDFLLAKFEKEIRRLSNMTRFILEVVEGKLIINNRP-RKDIMQDLV 1071

Query: 419  QRSWNA--SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR-----------AILELRLARL 465
            +R ++    + K       D       +    +                  +L +++  L
Sbjct: 1072 KRKYDPIYPEAKKTSSKSGDVEIAKQDEKEEGVDLDSADENLSKLLKGYNYLLSMKIWSL 1131

Query: 466  TGLGRDDIRNELNSLGIEIKECLDI----------------LSSRSRLLGIIKQELLSVK 509
            T    D+++  L +   +++E  D                 L    R     K      +
Sbjct: 1132 TKELVDELKKNLETAQKKMQELQDTPPSQLWKNDLDAFLSQLLELERQRMKEKAWEEKNR 1191

Query: 510  DELDTPRR 517
                  RR
Sbjct: 1192 KRSAKNRR 1199


>gi|76789400|ref|YP_328486.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237803090|ref|YP_002888284.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|76167930|gb|AAX50938.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231274324|emb|CAX11119.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|296436200|gb|ADH18374.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9768]
 gi|296438060|gb|ADH20221.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11074]
 gi|297140562|gb|ADH97320.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9301]
          Length = 490

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 220/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSAIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|166154002|ref|YP_001654120.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 434/Bu]
 gi|301335201|ref|ZP_07223445.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis L2tet1]
 gi|165929990|emb|CAP03473.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
          Length = 490

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 221/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP+G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPSGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSAIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|295394180|gb|ADG03701.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 175

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 140/175 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEV 175


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 111/524 (21%), Positives = 200/524 (38%), Gaps = 63/524 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ E+V+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTF-------NY 1127

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +L++ L  LT   +D++    N    E+        S S L   
Sbjct: 1128 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKE 1169


>gi|289525704|emb|CBJ15185.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296435273|gb|ADH17451.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/150]
 gi|296438992|gb|ADH21145.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/11023]
          Length = 490

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 220/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSTIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 111/524 (21%), Positives = 200/524 (38%), Gaps = 63/524 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ E+V+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTF-------NY 1127

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +L++ L  LT   +D++    N    E+        S S L   
Sbjct: 1128 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKE 1169


>gi|166154877|ref|YP_001653132.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930865|emb|CAP06427.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 134/506 (26%), Positives = 218/506 (43%), Gaps = 50/506 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP+G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPSGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +          
Sbjct: 272 GIHAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNY-------- 323

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K        +   +    L+ +    +        R  L +R  + S       +++ 
Sbjct: 324 LKKELLILEDSLSRELYHKTLECLFIKHKLYDT---VRSMLSKRKTSPSSSAIHNAVLEA 380

Query: 437 SSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            +  + +       + Q  A +  L + ++     +    EL  L  +       LS   
Sbjct: 381 LTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLK 437

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV 521
           +   +  ++LL    +L   R+T+I 
Sbjct: 438 KYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|15605393|ref|NP_220179.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|3329110|gb|AAC68255.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|297748791|gb|ADI51337.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749671|gb|ADI52349.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 220/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSTIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|170676381|gb|ACB30378.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 100/157 (63%), Positives = 125/157 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPH + A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHCDIAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 99/497 (19%), Positives = 189/497 (38%), Gaps = 55/497 (11%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            ++ +D +    + +++   L R++P + DGLKP  R+ILF   +       K  + +   
Sbjct: 664  ITYSDFINKELILFSL-ADLARSVPSMVDGLKPGQRKILFAAFKRNFTSQAKVAQFSGYV 722

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECR 134
             E    +H  G  ++   +  MAQ++  S  + ++   G FG  S  G   A+ RY    
Sbjct: 723  SEHSAYHH--GEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTS 780

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L      +        ++F    DG   EP       P VLVNG  GI  G +T +P +N
Sbjct: 781  LTPLTRTIFPKPDDILLNFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYN 839

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              ++V     ++ +              P  P      G  G     A+    +      
Sbjct: 840  PRDIVTNLKHLLRDE-------------PLEPMDPWYKGFKGTIVKSASKESGVSYTVTG 886

Query: 255  HIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +E+   +   I V E+P   +  +    LE +     + +   I D R+ +        
Sbjct: 887  IVEQV--NETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFE 944

Query: 312  IELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            I L     A+ +   L   ++ ++  S  ++N+   +G+  +  T   IL+ F   R E+
Sbjct: 945  ISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLEL 1004

Query: 369  VVRRTK-------YLLNKARDRAHVLVGLAIAVANLDE--------VVRIIRFSPNPETA 413
             V+R +       Y L K  ++   ++G+      ++          ++   F+P P+ A
Sbjct: 1005 YVKRKEVQVENLQYELLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKA 1064

Query: 414  RR-ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            +  +L     + SD+    +  D+     G     Y        +L + +  LT      
Sbjct: 1065 KASDLPVVGGDGSDV----EADDEEKLNKGVRAGDY------EYLLSMPIGTLTLEKVQQ 1114

Query: 473  IRNELNSLGIEIKECLD 489
            + NE + L  +++E   
Sbjct: 1115 LCNERDKLEGDVEELKK 1131


>gi|296437129|gb|ADH19299.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11222]
          Length = 490

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 220/507 (43%), Gaps = 52/507 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------LPDFPPGGTM-----DASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L
Sbjct: 272 GIYAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       +++
Sbjct: 332 EDSLSRELYHKTLEYLFIKHKL------------YDTVRSMLSKRKTSPSSSAIHNAVLE 379

Query: 436 DSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  + +       + Q  A +  L + ++     +    EL  L  +       LS  
Sbjct: 380 ALTPFLDTLPAP---DKQATAQLAALTIKKILCFDENSYEKELACLEKKHSSVQKDLSQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV 521
            +   +  ++LL    +L   R+T+I 
Sbjct: 437 KKYTVLYIKKLLETYRQLGH-RKTKIA 462


>gi|187917917|ref|YP_001883480.1| DNA topoisomerase IV subunit A [Borrelia hermsii DAH]
 gi|119860765|gb|AAX16560.1| hypothetical protein BH0035 [Borrelia hermsii DAH]
          Length = 627

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 132/507 (26%), Positives = 230/507 (45%), Gaps = 57/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  M    + + L IE QGNFG+ + GDP +A RY ECRL  
Sbjct: 58  GNAM-KYHPHGDTSIYEALVNM----ANKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITSYEPSYDGRNNEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     +L         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILSAVKSELLGESYEL--------YPDFPTGGIV-----DVNEYADGNGKVLVRAR--IE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
            T  D + I++ E+P+     +++  I   +R+   ++  I D   E+      + + L 
Sbjct: 216 PTD-DNKAILIKELPFGETTESLIASIERAIRKNYIKVSSINDFTTEN----VEIELTLP 270

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  I+K      +   V + + 
Sbjct: 271 RGVYASEVIEKLYHYTNCQVSISVNLLLLSERYPVIYTITDIIKFHAEHLQ--KVLKMEL 328

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K++    +       +    ++ +I+            ++       D      ++D
Sbjct: 329 ELEKSKILEKIFSKTLEQIFIEKKIYKILETISKESDVVGIVLSEILKYKDSLSRDIVLD 388

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D                    +L++ + +++    D    ++ +L     E   + S+  
Sbjct: 389 D-----------------IENLLKIPIRKISMFDIDKNNKDIRTLSK---ELRSVESNIR 428

Query: 496 RLLGIIKQELLSVKDELDT--PRRTRI 520
            + G     +  +  +      R+T I
Sbjct: 429 SIRGYSINFVDKLLAKYSKIYHRKTEI 455


>gi|15594381|ref|NP_212169.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 gi|195941775|ref|ZP_03087157.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 gi|216264420|ref|ZP_03436412.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218249341|ref|YP_002374569.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889128|ref|ZP_03623717.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225549222|ref|ZP_03770195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226322050|ref|ZP_03797575.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|3914263|sp|O51066|PARC_BORBU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2687910|gb|AAC66419.1| DNA topoisomerase IV (parC) [Borrelia burgdorferi B31]
 gi|215980893|gb|EEC21700.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218164529|gb|ACK74590.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885377|gb|EEF56478.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225370080|gb|EEG99520.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226232640|gb|EEH31394.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|312149750|gb|ADQ29821.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi N40]
          Length = 626

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 131/507 (25%), Positives = 235/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K          L        E + I           +++ +     S  ++++ +I 
Sbjct: 330 QKSKI---------LEKIFYKTLEQIFI----------EKKIYKLLETISKEENILSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 371 SEVLRHKESFSREVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKSINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T+I
Sbjct: 428 SIRGYSINFIDLLLAKYSKEHQRKTKI 454


>gi|190888750|gb|ACE96000.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 122/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 110/524 (20%), Positives = 199/524 (37%), Gaps = 63/524 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 680  LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 737

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 738  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 795

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 796  GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 854

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ E+V+    ++D  +            P  P+     G    +  
Sbjct: 855  GIGTGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 904

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 905  NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 954

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 955  TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 1014

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+     R +    R ++LL           N+AR     + G  I        L 
Sbjct: 1015 VLDILRDLFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 1074

Query: 399  EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 1075 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTF-------NY 1127

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +L++ L  LT   +D++    N    E+        S S L   
Sbjct: 1128 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKE 1169


>gi|170676377|gb|ACB30376.1| DNA gyrase subunit A [Burkholderia pseudomallei]
 gi|170676383|gb|ACB30379.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 126/157 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 109/522 (20%), Positives = 201/522 (38%), Gaps = 61/522 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +  D    +  + ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 679  LPEDYLYGQSTSYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 736

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 737  --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 794

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   A  L       T+ F  + D    EP         VL+NG  
Sbjct: 795  GGKDSASPRYIFTMLSPLARLLFPPKDDHTLRFLYD-DNQRVEPEWYNPINTMVLINGAE 853

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
            GI  G +  IP  ++ EVV+    ++D  +            P  P+     G    + +
Sbjct: 854  GIGTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELAS 903

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                  G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 904  NQYVINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLI 953

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D R+       + VI++     A+     L++   LQS  + N + L  +     +  T
Sbjct: 954  TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDT 1013

Query: 354  LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
            ++ IL+ F   R +    R ++LL           N+AR     + G  +        L 
Sbjct: 1014 VLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELI 1073

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+    +  +P  A +E  Q+  +  + ++       S     +  T          +L
Sbjct: 1074 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTF-------NYLL 1126

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            ++ L  LT   +D++  + N    E+        S S L   
Sbjct: 1127 DMPLWYLTKEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKE 1166


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 112/623 (17%), Positives = 221/623 (35%), Gaps = 60/623 (9%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 +  I  + I+D +    + ++++    R+IP + DGLKP  R++L+G ++  ++ 
Sbjct: 798  PGTHLDPEINEIPISDFINKELILFSMS-DNIRSIPSVLDGLKPGQRKVLYGCIKKKLKS 856

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
              K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 857  EIKVAQLAGYVSENTGYHH--GEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGK 914

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              +A RY    L +    + + L     ++  + D    EP       P +LVNG  GI 
Sbjct: 915  DFSAARYIFTELNEITRKIFNPLDDPLYNYVQD-DEQTVEPEWYLPVLPMILVNGAEGIG 973

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +TNIP++N  ++V     +++      + L E+             G  G       
Sbjct: 974  TGWSTNIPSYNPKDLVANIKRLMNG-----EELQEMTP--------WYKGWDGDIEQ--- 1017

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
              G    +    IE+      ++ +TE+P +V      E +      ++        +E 
Sbjct: 1018 -SGPQKYKITGRIEQV--GDNEVDITELPVKVWTNNYKEFLLAGFGTEKTPAWIKDMEEH 1074

Query: 304  DRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                 + V++L        +   L   ++  S  SL ++      G   +   ++ ILK 
Sbjct: 1075 HTTSIKFVVKLTDAEMQKSLRMGLMERFKLISSLSLGNMVAFDSMGRIKKYTDVLEILKE 1134

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R E   +R  Y+++K +    + +        L    ++   +   +    EL+  
Sbjct: 1135 FYYLRLEYYEKRKSYMVDKLQSEL-ITLSEKARFVKLIIDKKLSISNKKKKDLISELIAN 1193

Query: 421  SWNA----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI--- 473
            ++       + +D   L  D     G D     S      +L + L  LT    + +   
Sbjct: 1194 NFKKLKANGEQQDASSLDGDDDEVEGEDDNGNSSGSGYNYLLSMSLWSLTREHFERLLQQ 1253

Query: 474  ----RNELNSL---------GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
                  ELN L           ++ E ++   +  +     ++ L S   +    RR R 
Sbjct: 1254 RDQKEEELNVLLGKTATNLWEADLDEFMEAYEAFLKKDEEERESLASNGKKKPAKRRARN 1313

Query: 521  VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                 D      +  E     V+       V +      +   K       +  D +   
Sbjct: 1314 TASSKDQPASKKLKTEPKETKVTKKKSPSPVTVKKETVTKEKEKPVVPEEKKKGD-ILSF 1372

Query: 581  FIVS--------THTSVLFFSSL 595
            F  +        +   +  FSS 
Sbjct: 1373 FKTNKEEKSSGTSDDPISLFSSD 1395


>gi|51598298|ref|YP_072486.1| DNA topoisomerase IV subunit A [Borrelia garinii PBi]
 gi|51572869|gb|AAU06894.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 626

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/507 (25%), Positives = 232/507 (45%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRSVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     D+         PDFPTG ++       N YA G G I++R    IE
Sbjct: 171 ILSAVKSELLGETYDI--------YPDFPTGGIV-----DVNEYADGNGKILVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TL--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K          L        E + I           +++ +     S  ++++ +I 
Sbjct: 330 QKSKI---------LEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   + S+ S
Sbjct: 371 SEVLKYKESFSREVLKEDVENLLKIPIRKISLFDIDKNFKDIKILNK---ELKSVNSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T I
Sbjct: 428 SIRGYSINFIDLLLAKYSKDHQRKTEI 454


>gi|224533950|ref|ZP_03674535.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225549759|ref|ZP_03770724.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
 gi|224512953|gb|EEF83319.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225369719|gb|EEG99167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
          Length = 626

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 131/507 (25%), Positives = 235/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K          L        E + I           +++ +     S  ++++ +I 
Sbjct: 330 QKSKI---------LEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 371 SEVLRCKESFSREVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKSINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T+I
Sbjct: 428 SIRGYSINFIDLLLAKYSKEHQRKTKI 454


>gi|219685308|ref|ZP_03540127.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
 gi|219673081|gb|EED30101.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
          Length = 626

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 132/505 (26%), Positives = 229/505 (45%), Gaps = 54/505 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASIVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG+ + GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILSAVKSELLGETYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             NK                   E + I       +   + L   S   + +  ++  + 
Sbjct: 330 QRNKI---------FEKIFYKTLEQIFIE------KKIYKLLETISKEGNIVSIILSEVL 374

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
               +        + +     +L++ + +++    D    ++  L  E+K     +SS  
Sbjct: 375 KYKESFSR----EVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNKELKSVNSNISSIR 430

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI 520
                    LLS   +    R+T I
Sbjct: 431 GYSINFIDLLLSKYSKY-HQRKTEI 454


>gi|170676379|gb|ACB30377.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/157 (63%), Positives = 125/157 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+Y  + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYGTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|221217415|ref|ZP_03588886.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
 gi|221192693|gb|EEE18909.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
          Length = 626

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 131/507 (25%), Positives = 235/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K          L        E + I           +++ +     S  ++++ +I 
Sbjct: 330 QKSKI---------LEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 371 SEVLRHKESFSREVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKSINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T+I
Sbjct: 428 SIRGYSINFIDLLLAKYSKEHQRKTKI 454


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 177/420 (42%), Gaps = 33/420 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 650  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRRDIKVV 708

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 709  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 766

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 767  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 825

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVVD    ++   ++              P      G  G      TG G  
Sbjct: 826  SIPNYNPEEVVDNLKRLMAGEEL-------------VPMKPWFRGFKG----EVTGSGD- 867

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ +TE+P +       +K+ E+++ +++   I D +D +    
Sbjct: 868  --RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 925

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 926  VHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAV 985

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ +  
Sbjct: 986  RIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFKP 1044


>gi|331668933|ref|ZP_08369781.1| DNA gyrase subunit A [Escherichia coli TA271]
 gi|331064127|gb|EGI36038.1| DNA gyrase subunit A [Escherichia coli TA271]
          Length = 167

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/158 (57%), Positives = 124/158 (78%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           RL K AH L+ DL K+TVDF  NYDG+ + P     ++
Sbjct: 126 RLAKIAHELMADLEKETVDFVDNYDGTEKFPTSCQPKF 163


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/420 (22%), Positives = 177/420 (42%), Gaps = 33/420 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 651  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRRDIKVV 709

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 710  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 767

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 768  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 826

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVVD    ++   ++              P      G  G      TG G  
Sbjct: 827  SIPNYNPEEVVDNLKRLMAGEEL-------------VPMKPWFRGFKG----EVTGSGD- 868

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ +TE+P +       +K+ E+++ +++   I D +D +    
Sbjct: 869  --RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 926

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 927  VHFVIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAV 986

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ +  
Sbjct: 987  RIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFKP 1045


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 99/497 (19%), Positives = 190/497 (38%), Gaps = 55/497 (11%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            ++ +D +    + +++   L R++P + DGLKP  R+ILF   +       K  + +   
Sbjct: 664  ITYSDFINKELILFSL-ADLARSVPSMVDGLKPGQRKILFAAFKRNFTSQAKVAQFSGYV 722

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECR 134
             E    +H  G  ++   +  MAQ++  S  + ++   G FG  S  G   A+ RY    
Sbjct: 723  SEHSAYHH--GEQSLASTIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTS 780

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L      +        ++F    DG   EP       P VLVNG  GI  G +T +P +N
Sbjct: 781  LTPLTRTIFPKPDDILLNFLRE-DGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYN 839

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              ++V     ++ +  ++             P      G  G     AT    +      
Sbjct: 840  PRDIVTNLKHLLRDEQLE-------------PMDPWYKGFKGTIVKSATKESGVSYTVTG 886

Query: 255  HIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +E+   +   I V E+P   +  +    LE +     + +   I D R+ +        
Sbjct: 887  IVEQV--NETTIRVLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFE 944

Query: 312  IELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            I L     A+ +   L   ++ ++  S  ++N+   +G+  +  T   IL+ F   R E+
Sbjct: 945  ISLSEEKMAEALAEGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLEL 1004

Query: 369  VVRRTK-------YLLNKARDRAHVLVGLAIAVANLDE--------VVRIIRFSPNPETA 413
             V+R +       Y L K  ++   ++G+      ++          ++   F+P P+ A
Sbjct: 1005 YVKRKEVQVENLQYELLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKA 1064

Query: 414  RR-ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            +  +L     + SD+    +  D+     G     Y        +L + +  LT      
Sbjct: 1065 KASDLPVVGGDGSDV----EADDEEKLNKGVRAGDY------EYLLSMPIGTLTLEKVQQ 1114

Query: 473  IRNELNSLGIEIKECLD 489
            + NE + L  +++E   
Sbjct: 1115 LCNERDKLEGDVEELKK 1131


>gi|225552369|ref|ZP_03773309.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
 gi|225371367|gb|EEH00797.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
          Length = 626

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 130/507 (25%), Positives = 234/507 (46%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             +K  ++          +  +    RI +           L   S   + +  ++  + 
Sbjct: 330 QKSKILEKI-----FYKTLEQIFIEKRIYKL----------LETISKEGNIVSIILSEVL 374

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
               +        + +     +L++ + +++    D    ++  L     E   I S+ S
Sbjct: 375 RYKESFSR----EVLKEDVENLLKIPIRKISLFDIDKNSKDIKILNK---ELKGINSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T+I
Sbjct: 428 SIKGYSINFIDLLLAKYSKEHQRKTKI 454


>gi|219684816|ref|ZP_03539758.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
 gi|219671761|gb|EED28816.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
          Length = 626

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/507 (25%), Positives = 231/507 (45%), Gaps = 58/507 (11%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG+ + GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVL--YSKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     D+         PDFPTG ++       N YA G G +++R    IE
Sbjct: 171 ILSAVKSELLGETYDI--------YPDFPTGGIV-----DVNEYADGNGKVLVRA--KIE 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELK 315
               D + IV+ E+P+     +++  I + +R+   ++  I D   E+      + + L 
Sbjct: 216 TI--DEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSSINDFTAEN----VAIELSLP 269

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++++    + 
Sbjct: 270 RGVYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKILKMELEL 329

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
             NK                   E + I           +++ +     S  ++++ +I 
Sbjct: 330 QRNKI---------FEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIIL 370

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +  + +     +L++ + +++    D    ++  L     E   + S+ S
Sbjct: 371 SEVLKYKESFSREVFKEDVENLLKIPIRKISLFDIDKNSKDVKILNK---ELKSVNSNIS 427

Query: 496 RLLGIIKQELLSVKDELDTP--RRTRI 520
            + G     +  +  +      R+T I
Sbjct: 428 SIRGYSINFIDLLLAKYSKDHQRKTEI 454


>gi|295394166|gb|ADG03694.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 175

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 108/175 (61%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYDGS +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIAMEMLRDINKNTVDFADNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTRDLMEV 175


>gi|226452045|gb|ACO59202.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452047|gb|ACO59203.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452049|gb|ACO59204.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452051|gb|ACO59205.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452053|gb|ACO59206.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452055|gb|ACO59207.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452061|gb|ACO59210.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452063|gb|ACO59211.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452075|gb|ACO59217.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452077|gb|ACO59218.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452079|gb|ACO59219.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452085|gb|ACO59222.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452087|gb|ACO59223.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452089|gb|ACO59224.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/176 (50%), Positives = 128/176 (72%), Gaps = 1/176 (0%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           +GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE +L K A 
Sbjct: 61  LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAD 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|110626537|gb|ABG79009.1| DNA gyrase subunit A [Chromobacterium haemolyticum]
          Length = 163

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 97/163 (59%), Positives = 125/163 (76%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y + VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG+ 
Sbjct: 1   YVMGVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKKSARIVGDVIGKYHPHGDT 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+ + AH LL D+ K+TV
Sbjct: 61  AVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEIRMARIAHELLADIEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           DF PNYDGS  EP++L A+ PN+L+NG   IAVG+   I  H 
Sbjct: 121 DFGPNYDGSEHEPLILPAKIPNLLINGAPRIAVGVGPPISRHK 163


>gi|121511880|gb|ABM55391.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 168/315 (53%), Gaps = 58/315 (18%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           ++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ + S +   +VF T+
Sbjct: 65  NMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKS---LVFFTR 121

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISA 712
           +G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +  
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            R   GR++ GVRGI       ++  A V+ ++                           
Sbjct: 182 TR-DQGRSTRGVRGIKFKIDTDIVVYADVIDSE--------------------------- 213

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   EQ ILTVSEKG GKRT+  ++R++NR+G G+ A  +
Sbjct: 214 ------------------------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKL 249

Query: 833 SKINEIGALVAVFPV 847
           S   + G +V    V
Sbjct: 250 SP--KTGNIVGEVLV 262



 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 12/252 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++  ++ Q+I+  +  G   R     
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASR 875
            R   RS +G+R        +   +V    ++ +  +I+ VS+KG   R  + E R+ +R
Sbjct: 182 TRDQGRSTRGVRGIKFKI--DTDIVVYADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNR 239

Query: 876 ATKGVVIFSTAK 887
           A  GV+    + 
Sbjct: 240 AGSGVIAMKLSP 251



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE+++++  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAI--IPTPDFDE 112


>gi|15836248|ref|NP_300772.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae J138]
 gi|8979088|dbj|BAA98923.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
          Length = 478

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/507 (25%), Positives = 217/507 (42%), Gaps = 50/507 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A         D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 AR--ETLFNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    +         PDFP+G ++       + Y  G GSI +R    I  
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLM-----DPSEYQDGLGSITLRASIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +VV +I  Q     ++  I    +   I    D   +       + I+L +G+
Sbjct: 220 DK----TLVVKQICPQSTTETLIRSIENAAKRGTIKI--DTIQDFSTDVPHIEIKLPKGS 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-AFVAFREEVVVRRTKYLL 377
            A  +L  L+ +T  Q +       +   KP   ++  ILK    A +  +         
Sbjct: 274 RAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILKLHTTALQGYLEKELLLLQE 333

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
               D  H  +        L + VR +  + N + +  +L Q          ++  ++  
Sbjct: 334 QLTLDHYHKTLEYIFIKHKLYDSVREV-LAINKKISADDLHQ---------AVLHALEPW 383

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            + + +     +++  T  +  L + ++     +    EL ++  +       L    RL
Sbjct: 384 LHELATP----VTKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLG---RL 436

Query: 498 LGIIKQELLSVKDELD--TPRRTRIVE 522
             +  + L  + +       R+T+I  
Sbjct: 437 KEVTVKYLKGLLERHGHLGERKTQITN 463


>gi|149346164|gb|ABR23653.1| gyrase A [Aeromonas hydrophila]
          Length = 152

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/152 (61%), Positives = 122/152 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           D+ PNYDG+   P V+  + PN+LVNG  GIA
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 152


>gi|269302504|gb|ACZ32604.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 478

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 121/506 (23%), Positives = 213/506 (42%), Gaps = 48/506 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A         D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 AR--ETLFNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    +         PDFP+G ++       + Y  G GSI +R    I  
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLM-----DPSEYQDGLGSITLRASIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +VV +I  Q     ++  I    +   I    D   +       + I+L +G+
Sbjct: 220 DK----TLVVKQICPQSTTETLIRSIENAAKRGTIKI--DTIQDFSTDVPHIEIKLPKGS 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +L  L+ +T  Q +       +   KP   ++  ILK      +  + +    L  
Sbjct: 274 RAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILKLHTTALQGYLEKELLLLQE 333

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +     H             E + I     +       + ++       + ++  ++   
Sbjct: 334 QLTLDHHHKT---------LEYIFIKHKLYDSVREALAINKKISADDLHQAVLHALEPWL 384

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + + +     +++  T  +  L + ++     +    EL ++  +       L    R+ 
Sbjct: 385 HELATP----VTKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLG---RIK 437

Query: 499 GIIKQELLSVKDELD--TPRRTRIVE 522
            +  + L  + +       R+T+I  
Sbjct: 438 EVTVKYLKGLLERHGHLGERKTQITN 463


>gi|121511878|gb|ABM55390.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 168/315 (53%), Gaps = 58/315 (18%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           ++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ + S +   +VF T+
Sbjct: 65  NMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKS---LVFFTR 121

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISA 712
           +G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +  
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            R   GR++ GVRGI       ++  A V+ ++                           
Sbjct: 182 TR-DQGRSTRGVRGIKFKIDTDIVVDADVIDSE--------------------------- 213

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   EQ ILTVSEKG GKRT+  ++R++NR+G G+ A  +
Sbjct: 214 ------------------------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKL 249

Query: 833 SKINEIGALVAVFPV 847
           S   + G +V    V
Sbjct: 250 SP--KTGNIVGEVLV 262



 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 12/252 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++  ++ Q+I+  +  G   R     
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASR 875
            R   RS +G+R        +   +V    ++ +  +I+ VS+KG   R  + E R+ +R
Sbjct: 182 TRDQGRSTRGVRGIKFKI--DTDIVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNR 239

Query: 876 ATKGVVIFSTAK 887
           A  GV+    + 
Sbjct: 240 AGSGVIAMKLSP 251



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE+++++  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAI--IPTPDFDE 112


>gi|121511882|gb|ABM55392.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/316 (32%), Positives = 166/316 (52%), Gaps = 60/316 (18%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           ++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ + S +   +VF T+
Sbjct: 65  NMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFDESKS---LVFFTR 121

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISA 712
           +G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +  
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 713 IRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            R   GR++ GVRGI      D V+   ++   + +                        
Sbjct: 182 TR-DQGRSTRGVRGIKFKIDTDFVVDADVIDSEEQE------------------------ 216

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ILTVSEKG GKRT+  ++R++NR+G G+ A  
Sbjct: 217 ----------------------------ILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMK 248

Query: 832 VSKINEIGALVAVFPV 847
           +S   + G +V    V
Sbjct: 249 LSP--KTGNIVGEVLV 262



 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 10/251 (3%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++  ++ Q+I+  +  G   R     
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            R   RS +G+R     KI+    + A    ++  +I+ VS+KG   R  + E R+ +RA
Sbjct: 182 TRDQGRSTRGVRGIKF-KIDTDFVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 877 TKGVVIFSTAK 887
             GV+    + 
Sbjct: 241 GSGVIAMKLSP 251



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE+++++  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAI--IPTPDFDE 112


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 111/524 (21%), Positives = 200/524 (38%), Gaps = 63/524 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D    +  T ++  D +    + ++ +    R+IP + DGLKP  R++LF   +   
Sbjct: 179 LPEDYLYGQTTTYLTYNDFINKELILFSNS-DNERSIPSMVDGLKPGQRKVLFTCFKRN- 236

Query: 66  EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
             +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+   
Sbjct: 237 --DKREVKVAQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLH 294

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G   A+ RY    L   A  L       T+ F  + D    EP       P VL+NG  
Sbjct: 295 GGKDSASPRYIFTMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAE 353

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GI  G +  IP  ++ E+V+    ++D  +            P  P+     G    +  
Sbjct: 354 GIGTGWSCKIPNFDVREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAP 403

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDI 296
                 G + I   + IE          ++E+P +       E++ E +    EK    I
Sbjct: 404 NQYVISGEVAILNSTTIE----------ISELPVRTWTQTYKEQVLEPMLNGTEKTPPLI 453

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
            D R+       + V+++     A+     L++   LQ+  + N + L  +     +  T
Sbjct: 454 TDYREYHTDTTVKFVVKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDT 513

Query: 354 LIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LD 398
           ++ IL+ F   R +    R ++LL           N+AR     + G  I        L 
Sbjct: 514 VLDILRDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELI 573

Query: 399 EVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +V+    +  +P  A +E  Q+      ++  D     + S     S  T          
Sbjct: 574 KVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTF-------NY 626

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           +L++ L  LT   +D++    N    E+        S S L   
Sbjct: 627 LLDMPLWYLTKEKKDELCRLRNEKEQELDTLKR--KSPSDLWKE 668


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/510 (18%), Positives = 180/510 (35%), Gaps = 40/510 (7%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              ++  D +    + +++   L R+IP + DGLKP  R+ILF   +       K  + + 
Sbjct: 674  EKINYRDFVNKELILFSM-ADLARSIPSMVDGLKPGQRKILFCCFKRNFVTQAKVAQFSG 732

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G A++   +  MAQ++  S  + L+  +G FG+    G   A+ RY  
Sbjct: 733  YVSEHSAYHH--GEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYIF 790

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
              L      L        +D+    DG   EP   C   P VLVNG  GI  G ++ +P 
Sbjct: 791  TCLAPITRALFPQADDVLLDYLKE-DGQSIEPTWYCPIIPLVLVNGSEGIGTGWSSFVPN 849

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +N  E+V     ++   +++             P      G  G     AT         
Sbjct: 850  YNPREIVANLRRLLAGQEME-------------PMHPWYKGFKGSIECSATKDSGFTYTI 896

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYR 309
               I++   D   I ++E+P +       E +  ++      +   I D R+ +      
Sbjct: 897  TGAIDQI--DETTIKISELPVRKWTQDYKEFLDVMMTPSDKNKEPFIKDFREHNTDTKVH 954

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFRE 366
              + L     A  +   L +   L +  S + + L   K    +  T   IL+ F   R 
Sbjct: 955  FELSLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDNKGIIKKYDTPEQILEEFFHIRL 1014

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR---SWN 423
            ++ V+R    L       H +      +  + +   II  +        +L ++    + 
Sbjct: 1015 DMYVKRKAVQLQNLEYELHKVDNKVRFILGVVKG-EIIVNNRKRADLLADLQKKGFTPFP 1073

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSL 480
                     ++         +    +  ++      +L + +  LT      +R + + +
Sbjct: 1074 KKSKSSDPPVVGADPLPEDDEQDEKVKGIRAADYEYLLSMPIGTLTFEKVQQLRGQRDKM 1133

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKD 510
              E++E     ++   L   IK     +  
Sbjct: 1134 EGEVEELKK--ATPEALW--IKDLDEFLVK 1159


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 173/438 (39%), Gaps = 39/438 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V  + K V
Sbjct: 852  DHTTEEITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFKRNVRKDIKVV 910

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 911  ELAGYVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASA 968

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP +     P VL+NG  GI  G +T
Sbjct: 969  RYIYTRLSPFARRIFHPADEPLLTYNVD-DGHTIEPEIYVPVVPLVLINGADGIGTGWST 1027

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V     ++D               P  P      G TG   +    R   
Sbjct: 1028 SIPNYNPEDIVANLKCLMDGE-------------PLVPMQPWFRGFTGEVVSLGGERYKF 1074

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R       +     ++ +TE+P +       +++ E+++ +++   I D +D +    
Sbjct: 1075 SGR------ISQVGENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTK 1128

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L    +A  I   L  ++   +++ + N+VA +  G   +  +   IL+ F + 
Sbjct: 1129 VHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPEDILREFYSV 1188

Query: 365  REEVVVRR-------TKYLLNKARDRA-HVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            R +   +R       T+  + K R +     + +   +    E +            + +
Sbjct: 1189 RIKFYEKRKMPLWSLTQERVEKLRRQIGEKEIEVDNLIKLSKEDIWRKDLDDFIAEWKFQ 1248

Query: 417  LMQRSWNASDIKDLIDLI 434
            L       +     +  +
Sbjct: 1249 LEDEGRRRAKSAKSVRRV 1266


>gi|170676385|gb|ACB30380.1| DNA gyrase subunit A [Burkholderia mallei]
 gi|170676387|gb|ACB30381.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 126/157 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|295394176|gb|ADG03699.1| DNA gyrase subunit A [Streptococcus salivarius]
          Length = 175

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/175 (60%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPV RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVQRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L DL K+TVDF+ NYDGS +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDLNKNTVDFQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R PN+LVNG  GIAVGMATNIP HNL E +D    ++DNP++    LME+
Sbjct: 121 IVLPSRIPNLLVNGATGIAVGMATNIPPHNLAETIDAVKLMMDNPEVTTRELMEV 175


>gi|259014742|gb|ACV88661.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 173

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 107/173 (61%), Positives = 135/173 (78%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD
Sbjct: 1   DVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  FSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           P VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +D L
Sbjct: 121 PSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDL 173


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 167/395 (42%), Gaps = 31/395 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V+ + K V
Sbjct: 651  DHSTKQITYTDFINKELILFSM-ADNQRSIPSVVDGLKPGQRKVLYTCFKRNVKKDMKVV 709

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  L  +E  GNFGS    G   A+ 
Sbjct: 710  ELAGHVSGMTA--YQHGDTSLQQTIVGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASA 767

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  + +   +  + +  + DG   EP +     P +L+NG  GI  G ++
Sbjct: 768  RYIYTRLSPFARRVFNQQDEPLLTYNED-DGEKIEPELYVPVVPLILINGADGIGTGWSS 826

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V     ++D  + +             P      G  G        R   
Sbjct: 827  SIPNYNPEDIVANLKRMMDGEEPE-------------PMQPWFRGFHGDVTPQGPDRYKF 873

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R          + +++ +TE+P +       +K+ ++++ ++    I D +D +    
Sbjct: 874  SGR------IQELNEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTK 927

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI++        +   L  ++   +++ + N+VA +  G   +  T+  ILK F A 
Sbjct: 928  VHFVIQMDEKHLKSAVEEGLEEKFKLSKTIATTNLVAFDPEGRITKYATVSDILKEFFAV 987

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
            R +   RR ++ L++ +     L   A  V  + +
Sbjct: 988  RLKYYERRKQHQLSELQKDLDKLTNQARFVQMIID 1022


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/521 (18%), Positives = 196/521 (37%), Gaps = 59/521 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   K   
Sbjct: 722  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---KNEC 777

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 778  KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 837

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 838  ARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYS 896

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  ++++     I+      + L+ +I                    Y   +G 
Sbjct: 897  SFIPNYNYKDIIENIKRYINK-----EPLLPMIP------------------WYKDFKGR 933

Query: 248  IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I   G +  E        D E + + E+P +       E + EL+ +++   I D  D S
Sbjct: 934  IESNGKTGYETIGIIHKIDDETLEINELPIKKWTQDYKEFLEELLTDEKHQLIVDYIDNS 993

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKA 360
              +     I++            L +   L+S  +   + L           T + ILK 
Sbjct: 994  SHEDICFTIKMDPAKMKKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKD 1053

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE-------------VVRIIRFS 407
            F   R +    R  YL++K      ++   +  +  +               V  + R  
Sbjct: 1054 FCFHRLKAYENRKSYLISKLEKEKKIISNKSKFILAIVNNELVVSKKKKKVLVEELYRKG 1113

Query: 408  PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             +P     ++ +      ++ + ++  +D+   I       +S      +L + +  LT 
Sbjct: 1114 YDPYKDINKIKKEEIFEQELLESVENPEDNEEIIA-----GISVKDYDYLLSMPIFSLTL 1168

Query: 468  LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
               +++  +      E++   +I +  +  L  I++   ++
Sbjct: 1169 EKVEELLAQHKEKEKELEILKNI-TVETMWLKDIEKVEEAI 1208


>gi|329124301|gb|AEB72028.1| DNA gyrase subunit A [Aeromonas sp. A19(2011)]
          Length = 153

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/152 (61%), Positives = 121/152 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD
Sbjct: 2   VIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYD 61

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 62  TIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVP 121

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           NYDG+   P V+  + PN+LVNG  GIAVG A
Sbjct: 122 NYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWA 153


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 117/527 (22%), Positives = 201/527 (38%), Gaps = 63/527 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +K   +VS +D +    + ++ N+   R+IP + DGLKP  R++LF  ++     +KK +
Sbjct: 691  QKNTIAVSYSDFINKELVLFS-NLDNERSIPSMVDGLKPGQRKVLFTCLKRN---DKKEI 746

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAA 127
            K A+++G V     + HG A++   +  +AQ++    +L LLL  GQ       G   A+
Sbjct: 747  KVAQLAGSVAEHSAYHHGEASLMGTIINLAQNYVGSNNLNLLLPIGQFGTRLQGGKDAAS 806

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L      +        + +  + D    EP       P VLVNG  GI  G  
Sbjct: 807  PRYIFTLLNPLTRLIFHVHDDPLLKYNKD-DNQKIEPEWYIPIIPMVLVNGADGIGTGWM 865

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP HN  E+V     ++D      + L         P      G  G   +Y   R  
Sbjct: 866  TKIPNHNPREIVQNIKRMLDG----DEPL---------PMKPWYKGFKGDIESYGDSRYL 912

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL----VREKRIVDIADLRDES 303
            +        E +     Q+ +TE+P      A  E + E     V  K    I D ++ +
Sbjct: 913  VSG------EISIISNNQLEITELPVGTWTQAYKENVLEPLLHGVENKVPPLIQDYKEYN 966

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKA 360
                 R VI+++           L++   LQS  S+N +     NG       +  ILK 
Sbjct: 967  TDTTVRFVIQMEPSKLQKFEEEGLHKVFKLQSTISINSMCTFDSNGVLKRSEDVTVILKE 1026

Query: 361  FVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVA-----NLDEVVRII 404
            F   R    V+R  YL            N+AR       G  +         +DE+V++ 
Sbjct: 1027 FYDLRMLFYVKRKSYLEGMLQSEADKLSNQARFIIEKCDGKLVIENKKKKVMIDELVKLK 1086

Query: 405  RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
              S   +T +  + + +          +            G  Y        +L + L  
Sbjct: 1087 YESDPVKTWKTNIDKEAALTYGEIWEDEGSGSEEEGTVRSGPDY------DYLLGMPLWS 1140

Query: 465  LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            LT   ++++  + +    +IKE   + +    LL   +++L +  ++
Sbjct: 1141 LTLERKNELLKKRDD---KIKELKSLQAKSPSLL--WREDLDAFLEK 1182


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  DVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  DVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|226452065|gb|ACO59212.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452067|gb|ACO59213.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452069|gb|ACO59214.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452071|gb|ACO59215.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452073|gb|ACO59216.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452081|gb|ACO59220.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452083|gb|ACO59221.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 89/176 (50%), Positives = 127/176 (72%), Gaps = 1/176 (0%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           +GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G  D     AA RYTE +L K A 
Sbjct: 61  LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPKSFAAMRYTEAKLSKFAD 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|221504453|gb|EEE30126.1| hypothetical protein TGVEG_051980 [Toxoplasma gondii VEG]
          Length = 1211

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 136/426 (31%), Positives = 224/426 (52%), Gaps = 57/426 (13%)

Query: 128 ERYTECRLQKAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL +     L  +L    V FRPN+D + +EPVV  A  P VL+ G  GIAVGM
Sbjct: 1   MRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGM 60

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           +T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I  AY  GRG
Sbjct: 61  STQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIPGAYKEGRG 120

Query: 247 SIVIRGVSHIE------------------------------KTSGDREQIVVTEIPYQVN 276
            +++RG  H+E                                  +  ++V+TE+PY VN
Sbjct: 121 RVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNVRNGRKNERRLVITELPYGVN 180

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K+ +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L ++T+LQ  
Sbjct: 181 KSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVY 240

Query: 337 FSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
             ++++AL  G KP RF+L  +L +++AFR   + R       + + R+H+L GL  AV+
Sbjct: 241 IPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVS 300

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            +D+VV+ +R S + + A+++L +                           +  S  Q +
Sbjct: 301 LMDDVVKTVRESLSADEAKQKLTE-------------------------PPLGFSPAQAQ 335

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           A+L L L+RLT L R  +  E  +    + E   +L+    +  ++ +EL + K     P
Sbjct: 336 ALLRLTLSRLTRLERRQLEEEAKAQKNRLSELASLLAHDREIYELMVEELQAHKTRHKAP 395

Query: 516 RRTRIV 521
           R+T+++
Sbjct: 396 RKTKVL 401



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 22/144 (15%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V              
Sbjct: 942  IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPE----------- 990

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     +  D  +  S K   S E     E   E    E  +L V+  GFGKR    
Sbjct: 991  ---------VKEDEAKTESRKEGDSDETQSKNESSNE--KAEPSLLIVTAAGFGKRIRVS 1039

Query: 816  DFRISNRSGKGIRATDVSKINEIG 839
              R+  R G G+R   + K  ++ 
Sbjct: 1040 ALRMQRRRGVGVRVIRLVKRKKVA 1063



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 184/554 (33%), Gaps = 78/554 (14%)

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL-GR 470
            AR +      +A    +  + +          G    +  Q +        R  G+  R
Sbjct: 468 KARTDARHEEGSAGQALEETEGLG----GFEEKGRDDRTSTQRKKFAGQDTWRKDGIVDR 523

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
                E       +   ++  S+ +      +       +E     R    E + +M  E
Sbjct: 524 QKRLKEEGETETLVSRDVNESSTEAETDASEEDREGDSSEEDQDDARVPFGE-IKNMNKE 582

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVY-------------------------------RAQ 559
           D I  +  VV +S    V+R+PLSVY                                AQ
Sbjct: 583 DFISNQRNVVLLSAPALVRRLPLSVYPTLRRGALGVRSLSRSLASAESPDLERNEADEAQ 642

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG KG+   V      +  ++   T   +LF S+ G+V     +R+P+GS  +RG +L 
Sbjct: 643 TRGVKGKLAAVGASS--LQGVWSCWTKDRLLFLSANGYVSMLPAYRVPLGSRISRGTSLP 700

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATK------------HGNVRRNKLSDFIQ 667
            +L     ++   +    E  ++   L    A +                +   +     
Sbjct: 701 QLL-FEGWKKPAALRRLGESAAAAGALAEDAANREKKREEKERTLLREAAQVAAVLAVPP 759

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RG 726
             +  K      + +   S     +   +++ T  G+  +  +   R+   R    V + 
Sbjct: 760 PTQREKARGVRQASE---SSGKSRKAKFLVVVTDQGRIAKIKLK--RILGRRCETKVKKL 814

Query: 727 ISLAKGDQVISMAIVLH-----ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +SL +GD + + A++       A          +KH+       +   EE  + K D   
Sbjct: 815 LSLVQGDSIRAAALLEEEVEPLARGRVSGAGKEIKHLRGNGSECNATDEERGARKKDREE 874

Query: 782 EGNISEERCQELKLKEQFILTVSEKGF-----GKRTSSYDFRISNRSGKGIRATDVSKIN 836
           E   + E+ +E +  E+      E+       G R    +        +G R    S+  
Sbjct: 875 EDEETTEKEEEEEEDEEEEEEEEEEEEEEEEAGSRLVEDEDDAGGEGAEGERTDLKSEEK 934

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA-TKGVVIFSTAKDERVVSVE 895
                       ++  I++V+ +G  +R P + +R +  + T+GV        + V SV 
Sbjct: 935 RD---------TNSPSIVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVA 985

Query: 896 RIRESEIVDEAEST 909
            +      DEA++ 
Sbjct: 986 VVPPEVKEDEAKTE 999



 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 55/311 (17%)

Query: 641  SSWNNLYVVFATKHGNVRRNKLSDFIQIN--RSGKIAMKLDSRDEILSVETCTQE----- 693
             S    ++V  T  G + + KL   +        K  + L   D I +     +E     
Sbjct: 778  KSRKAKFLVVVTDQGRIAKIKLKRILGRRCETKVKKLLSLVQGDSIRAAALLEEEVEPLA 837

Query: 694  -NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
               +    K  + +R   S                   K D+          + + +E  
Sbjct: 838  RGRVSGAGKEIKHLRGNGSECNATDEERGA-------RKKDREEEDEETTEKEEEEEEDE 890

Query: 753  CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER----CQELKLKEQFILTVSEKGF 808
               +    +          +   ++D+  EG   E       ++       I+ V+ +G 
Sbjct: 891  EEEEEEEEEEEEEEEAGSRLVEDEDDAGGEGAEGERTDLKSEEKRDTNSPSIVIVTRQGM 950

Query: 809  GKRTSSYDFRISNR-SGKGIRATDVSKINEIGALVAVFPVNDNDQ--------------- 852
            G R  +   R S     +G+RA  +   + + ++  V P    D+               
Sbjct: 951  GLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESRKEGDSDETQ 1010

Query: 853  -------------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                         +++V+  G   R+ V+ +R+  R   GV +    K ++V        
Sbjct: 1011 SKNESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKRKKVA------- 1063

Query: 900  SEIVDEAESTE 910
             E  D   S E
Sbjct: 1064 REGDDRGLSDE 1074


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 179/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I++        +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  DVHFIIQMDEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 650  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 708

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 709  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 766

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 767  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 825

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 826  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 874

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 875  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 924

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 925  DVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 984

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 985  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1043

Query: 424  A 424
             
Sbjct: 1044 P 1044


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1455

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 111/563 (19%), Positives = 201/563 (35%), Gaps = 74/563 (13%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +VS ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KANTNINESMNYNVRNVSYSEFVHKELILFSV-ADCERSIPSVVDGLKPGQRKIMFSAFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K  + A    E    +H  G  ++   +  +AQD+  +  + L+  +GQ    
Sbjct: 706  RNLVRSLKVAQLAGYVSEHAAYHH--GEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A  +        V++R + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  +V+D    +     +  + L         P      G TG  
Sbjct: 823  TAGIGTGFATNIPNYSPLDVIDNLNRL-----LSGEELQ--------PMKPWYFGFTGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  +G  V  G + +         + +TE+P         + + +L        +  
Sbjct: 870  E--EREKGKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLRER---EIVIQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + +        +       R    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFIHPEVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKYLDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   RR ++LL + +  A  L  +   V  + +   I+    + +   
Sbjct: 981  ESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIV-TRRSMKDVL 1039

Query: 415  RELMQRSWNA------------------------------SDIKDLIDLIDDSSYTIGSD 444
            ++L QR +                                +D ++ I L  D     G  
Sbjct: 1040 KDLKQRGYTPFPPQQKKKMSSTTIVDEEEETERRNTAATSADAEEAIVLQPDELIGPGGG 1099

Query: 445  GTMYLSEVQTRA-----ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS-SRSRLL 498
            G     EV+  A     +L LRL  LT      ++     L    ++  +I   +   L 
Sbjct: 1100 GAQEEPEVKQNARDYDYLLGLRLWNLTAEMSARLK---AQLDAAREKYENIAKRTPKDLW 1156

Query: 499  GIIKQELLSVKDELDTPRRTRIV 521
                  L    ++L   RR  I 
Sbjct: 1157 REDLDLLRPDVEKLFDERRKEIA 1179


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 111/563 (19%), Positives = 201/563 (35%), Gaps = 74/563 (13%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +VS ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KANTNINESMNYNVRNVSYSEFVHKELILFSV-ADCERSIPSVVDGLKPGQRKIMFSAFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K  + A    E    +H  G  ++   +  +AQD+  +  + L+  +GQ    
Sbjct: 706  RNLVRSLKVAQLAGYVSEHAAYHH--GEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A  +        V++R + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  +V+D    +     +  + L         P      G TG  
Sbjct: 823  TAGIGTGFATNIPNYSPLDVIDNLNRL-----LSGEELQ--------PMKPWYFGFTGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  +G  V  G + +         + +TE+P         + + +L        +  
Sbjct: 870  E--EREKGKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLRER---EIVIQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + +        +       R    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFIHPEVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKYLDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   RR ++LL + +  A  L  +   V  + +   I+    + +   
Sbjct: 981  ESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIV-TRRSMKDVL 1039

Query: 415  RELMQRSWNA------------------------------SDIKDLIDLIDDSSYTIGSD 444
            ++L QR +                                +D ++ I L  D     G  
Sbjct: 1040 KDLKQRGYTPFPPQQKKKMSSTTIVDEEEETERRNTAATSADAEEAIVLQPDELIGPGGG 1099

Query: 445  GTMYLSEVQTRA-----ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS-SRSRLL 498
            G     EV+  A     +L LRL  LT      ++     L    ++  +I   +   L 
Sbjct: 1100 GAQEEPEVKQNARDYDYLLGLRLWNLTAEMSARLK---AQLDAAREKYENIAKRTPKDLW 1156

Query: 499  GIIKQELLSVKDELDTPRRTRIV 521
                  L    ++L   RR  I 
Sbjct: 1157 REDLDLLRPDVEKLFDERRKEIA 1179


>gi|289672552|ref|ZP_06493442.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 403

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 102/450 (22%), Positives = 180/450 (40%), Gaps = 60/450 (13%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P  
Sbjct: 1   NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP-- 58

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + EL+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 59  -KAELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMK 91

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDE 530
           +R+E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV       + + 
Sbjct: 92  LRSEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSEN 151

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +
Sbjct: 152 ELMPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAV 203

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP  S + +G+ L   L    G     ++  PED     +   V 
Sbjct: 204 FIDSTGRSYSVAAHTLP--SARGQGEPLTGKLQPPPGATFECVL-LPED-----DALYVI 255

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F
Sbjct: 256 ASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVF 315

Query: 709 PISAIRVFAG---RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            IS +           +G+ G  +A  ++ ++   V+   A           + A +R +
Sbjct: 316 KISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAVIGQGATL--------VLQAGKRTL 367

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKL 795
           S   E++   K +    GN      Q +  
Sbjct: 368 SLKPEDLEHYKGERGRRGNKLPRGFQRVDA 397



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 242 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSL-----PAGAKVILPRPVP 296

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   ++++    +  KG  I      ERV S
Sbjct: 297 DREQNWLAAVTTEGRLLVFKISDLPQLGKG-KGNKIIGI-PGERVAS 341


>gi|308198963|dbj|BAJ22616.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 176

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 104/173 (60%), Positives = 129/173 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 4   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 63

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS 
Sbjct: 64  QDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSE 123

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D  L+
Sbjct: 124 SEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLE 176


>gi|226452057|gb|ACO59208.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452059|gb|ACO59209.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 89/176 (50%), Positives = 127/176 (72%), Gaps = 1/176 (0%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V
Sbjct: 1   RKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           +GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE +L K A 
Sbjct: 61  LGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAD 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 121 VLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|15618626|ref|NP_224912.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae CWL029]
 gi|16752324|ref|NP_444582.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae AR39]
 gi|33242075|ref|NP_877016.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
 gi|4377020|gb|AAD18855.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
 gi|7188969|gb|AAF37925.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|33236585|gb|AAP98673.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 478

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 126/507 (24%), Positives = 217/507 (42%), Gaps = 50/507 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A         D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 AR--ETLFNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    +         PDFP+G ++       + Y  G GSI +R    I  
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLM-----DPSEYQDGLGSITLRASIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +VV +I  Q     ++  I    +   I    D   +       + I+L +G+
Sbjct: 220 DK----TLVVKQICPQSTTETLIRSIENAAKRGTIKI--DTIQDFSTDVPHIEIKLPKGS 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-AFVAFREEVVVRRTKYLL 377
            A  +L  L+ +T  Q +       +   KP   ++  ILK    A +  +         
Sbjct: 274 RAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILKLHTTALQGYLEKELLLLQE 333

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
               D  H  +        L + VR +  + N + +  +L Q          ++  ++  
Sbjct: 334 QLTLDHYHKTLEYIFIKHKLYDSVREV-LAINKKISADDLHQ---------AVLHALEPW 383

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            + + +     +++  T  +  L + ++     +    EL ++  +       L    R+
Sbjct: 384 LHELATP----VTKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLG---RI 436

Query: 498 LGIIKQELLSVKDELD--TPRRTRIVE 522
             +  + L  + +       R+T+I  
Sbjct: 437 KEVTVKYLKGLLERHGHLGERKTQITN 463


>gi|295394170|gb|ADG03696.1| DNA gyrase subunit A [Streptococcus parasanguinis]
          Length = 175

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFADNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLMMDNPEVTTRELMEV 175


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHPADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMVGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 109/572 (19%), Positives = 196/572 (34%), Gaps = 86/572 (15%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +E  +  +  VS  D +    + ++I     R+IP   DG KP  R+ILF   +
Sbjct: 643  KTNVNVNESMDYSVRQVSYRDFVDKELILFSI-ADCERSIPSAIDGFKPGQRKILFSCFK 701

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 702  RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 759

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A  +        V+++ + DG   EP       P VLVNG
Sbjct: 760  LHGGKDHAAGRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNG 818

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +T+IP +N  EV+     ++   ++                     G TG  
Sbjct: 819  TTGIGTGFSTSIPNYNPLEVIRNLERLMRGEEV-------------HKMQPWYFGFTGTM 865

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                   G  +  G   +         + +TE+P  V      +K  E +REK +  +  
Sbjct: 866  E--EKEPGKFISHGRYEVRPDG----VVCITELPIGVWTQTY-KKFLEDMREKEL--VVQ 916

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +   +   R    + + + N++A N  G   + +  
Sbjct: 917  YREHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYWDA 976

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              +LK F   R +   +R  YLL + R     L  +   V  + E   ++          
Sbjct: 977  ESVLKDFYLVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLE 1036

Query: 408  --------PNPETARRELMQR--SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR-- 455
                    P P  A+++L          + +      ++    +GS     + +      
Sbjct: 1037 DLQGRLYLPFPPHAKKKLSSTTVEEEGGEAEPTTQNSEEDVLGMGSAADGGVDDGDAETP 1096

Query: 456  ----------AILELRLARLTGLGRDDIRNEL--------------------NSLGIEIK 485
                       +L ++L  LT      +  +L                      L +   
Sbjct: 1097 EVRRATRNYDYLLGMKLWSLTAEMIARLEAQLARARHDTATMEARTPKDMWMEDLQVLRT 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +     ++R   +  I  +   VK      RR
Sbjct: 1157 KLESFYAAREVEIATI--QRKKVKKPF-DARR 1185


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 185/437 (42%), Gaps = 40/437 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDHITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  +VVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEDVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I   G S +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTGDSEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + R   L   A  V  + +   +I         ++ L+ +   
Sbjct: 983  VRIKLYEKRKQYLLSELQTRLDKLSNQARFVQMIIDGKLVISKK------KKALLIQELQ 1036

Query: 424  ASDIKDLIDLIDDSSYT 440
                K    ++D+    
Sbjct: 1037 EKGFKPFPKVVDNREPG 1053


>gi|15834656|ref|NP_296415.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270284821|ref|ZP_06194215.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270288850|ref|ZP_06195152.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Weiss]
 gi|301336201|ref|ZP_07224403.1| DNA topoisomerase IV subunit A [Chlamydia muridarum MopnTet14]
 gi|7190071|gb|AAF38922.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 490

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 137/513 (26%), Positives = 221/513 (43%), Gaps = 52/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I+D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NISDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    L         PDF +G  +       + Y  G GSIV+R    I  
Sbjct: 173 LKAQIAILNDQPFSL--------FPDFASGGSM-----DASDYQDGLGSIVLRATIDIVN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVDIADLRDESDRQGYRVVIELKR 316
                  +++ EI        ++  I    +    +I  I D   +       + I+L +
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTD----LPHIEIKLPK 271

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  A  +L  LY +T  Q + +    A+   KP   ++  IL+      +  + +    L
Sbjct: 272 GVHAKDLLQPLYAHTECQVVLTSRPTAIYQGKPWETSVSEILRLQTETLQSYLKKELLIL 331

Query: 377 LNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +   R+  H  +        L             +T R  L +R  + S       + D
Sbjct: 332 EDSLTREHYHKTLEYLFIKHKL------------YDTVRAMLSKRKTSPSASVIHNAVTD 379

Query: 436 DSSYTIGSDGTMYLSEVQT-RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             +  +G+  T    + Q    +  L + ++     +    EL SL  +       L   
Sbjct: 380 ALAPFLGTLPTP---DKQATTQLASLTIKKILCFDENAYEKELLSLEKKRCNVQKDLGQL 436

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
            +   +  ++LL     L   R+T+I +    +
Sbjct: 437 KKYTILYIKKLLDAYKHLGH-RKTKIEKFEDAL 468


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMVGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 180/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMVGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 95/498 (19%), Positives = 190/498 (38%), Gaps = 64/498 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                 + ++  T++ + D +    + ++    + R+IP + DGLKP  R+ILF   +  +
Sbjct: 613  FQPGNQLDQSKTNIPVPDFIDKELILFSRY-DVERSIPSVVDGLKPSQRKILFAAFKRNL 671

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
                K  + +    E  G +H  G  ++  A+  MAQD+    ++ LLL  GQ     + 
Sbjct: 672  TNEMKVAQFSGYVAEHSGYHH--GEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLLG 729

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L  A   + +      + +  + DGS  EP       P +LVNG  G
Sbjct: 730  GKDSASARYIFTKLSPATRQVFNQSDDVLLKYLED-DGSSIEPEWYVPAIPFLLVNGANG 788

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP++N  +++D    +I   ++              P      G TG     
Sbjct: 789  IGTGFSTDIPSYNPKDIIDNVKRLISGKEM-------------VPMTPWYKGFTG--TIV 833

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                G+   +GV+ +     + + +VV+E+P     +   +   E + EK++  I D R+
Sbjct: 834  QNDNGTFTCKGVAKV-----NGKVVVVSELPIGTWTSDY-KDFLEGLVEKKV--IVDFRE 885

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            +   +     I+        ++     +   +    +++     G   +    + I++ +
Sbjct: 886  KHTEKNVMFEIDYSGEPDISIL-----KLEKVIRTTNMHAFDPQGKIKKYADPLDIIRDW 940

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R E   +R  YLL     +A +       +  +     ++           EL    
Sbjct: 941  FEVRREFYTKRKNYLLKDLSHKAAIAENKHRFITLIVND-ELVLSKKTESVILSEL---- 995

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      Y SE   + +L++ ++ LT    + +R E   L 
Sbjct: 996  ---------------------RTLKFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLK 1034

Query: 482  IEIKECLDILSSRSRLLG 499
             E+    +  +SR+++  
Sbjct: 1035 KELSILEN--TSRTQMWN 1050


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 93/420 (22%), Positives = 181/420 (43%), Gaps = 33/420 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVVD    ++       + L+ +   P F      +  +G +       G I
Sbjct: 824  SIPNYNPEEVVDNLKRLMVG-----EELVPM--KPWFRGFKGEVSGSGDR---YKFSGII 873

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
                 + +E          +TE+P +       +K+ E+++ +++   I D +D +    
Sbjct: 874  KQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 923

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 924  VHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAV 983

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R +YLL++ + +   L   A  V  + +   ++          +EL ++ +  
Sbjct: 984  RIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDG-ELVISKKKKAVLIQELQEKGFKP 1042


>gi|295394172|gb|ADG03697.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|295394174|gb|ADG03698.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 175

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394152|gb|ADG03687.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 175

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD PAA+RYTE R+ K +  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTHDLMEV 175


>gi|121511874|gb|ABM55388.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
 gi|121511876|gb|ABM55389.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 105/315 (33%), Positives = 167/315 (53%), Gaps = 58/315 (18%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           ++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ + S +   +VF T+
Sbjct: 65  NMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFDESKS---LVFFTR 121

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISA 712
           +G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +  
Sbjct: 122 NGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            R   GR++ GVRGI       ++  A V+  +                           
Sbjct: 182 TR-DQGRSTRGVRGIKFKIDTDIVVDADVIDNE--------------------------- 213

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   EQ ILTVSEKG GKRT+  ++R++NR+G G+ A  +
Sbjct: 214 ------------------------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKL 249

Query: 833 SKINEIGALVAVFPV 847
           S   + G +V    V
Sbjct: 250 SP--KTGNIVGEVLV 262



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/251 (22%), Positives = 102/251 (40%), Gaps = 10/251 (3%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRADEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++  ++ Q+I+  +  G   R     
Sbjct: 122 NGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            R   RS +G+R     KI+    + A    N+  +I+ VS+KG   R  + E R+ +RA
Sbjct: 182 TRDQGRSTRGVRGIKF-KIDTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNRA 240

Query: 877 TKGVVIFSTAK 887
             GV+    + 
Sbjct: 241 GSGVIAMKLSP 251



 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE+++++  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAI--IPTPDFDE 112


>gi|295394164|gb|ADG03693.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|295394168|gb|ADG03695.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
          Length = 175

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394154|gb|ADG03688.1| DNA gyrase subunit A [Streptococcus australis]
          Length = 175

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFTDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
            VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNPD+    LME+
Sbjct: 121 NVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLMMDNPDVTTRELMEV 175


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 107/519 (20%), Positives = 191/519 (36%), Gaps = 47/519 (9%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              +  +D +    + +++   L R+IP + DGLKP  R+ILF   +       K  + + 
Sbjct: 675  DKIKYSDFVNKELILFSM-ADLARSIPSMVDGLKPGQRKILFCCFKRNFVTQAKVAQFSG 733

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G A++   +  MAQ++  S  + L+  +G FG+    G   A+ RY  
Sbjct: 734  YVSEHSAYHH--GEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYIF 791

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
              L      L        +D+    DG   EP   C   P VLVNG  GI  G ++ +P 
Sbjct: 792  TCLAPITRALFPQPDDVLLDYMKE-DGQSIEPSWYCPIIPLVLVNGSEGIGTGWSSFVPN 850

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +N  E+V     ++   ++              P         G     AT    +    
Sbjct: 851  YNPREIVANIRRLLAGQELT-------------PMHPWYKSFMGTIECSATKDIGLTYTI 897

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYR 309
               IE+   D   I + E+P +       E +  L+      +   I D R+ +      
Sbjct: 898  TGTIEQI--DETTIKILELPVRKWTQDYKEFLDALMTPSDKNKEPFIKDFREHNTDTKVH 955

Query: 310  VVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + L     A  +   L   ++ T+  S  ++++    G   +  T   IL+ F   R 
Sbjct: 956  FELTLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDAKGIIKKYDTPEQILEEFFHIRL 1015

Query: 367  EVVVRRT-------KYLLNKARDRAHVLVGLAIAVANLDEVVRI--------IRFSPNPE 411
            ++ V+R        +Y L K  ++   ++G+      ++   RI          F+P P+
Sbjct: 1016 DLYVKRKAVQLQNLQYELVKVDNKVRFILGVVKGEIIVNNRKRIDLLSELQHKGFAPFPK 1075

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             A+          +D     +  D+    +      YL  +   ++   ++ +L G  RD
Sbjct: 1076 KAKSP--DPPVVGADPLPEDNEQDEKVKGVKVADYDYLLSMPIGSLTYEKVQQLRGQ-RD 1132

Query: 472  DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
             +  E+  L     E L I      L+ +  QE     D
Sbjct: 1133 KMEEEVEELKRATPEALWIKDLDEFLVKLDAQEEQEAID 1171


>gi|295394160|gb|ADG03691.1| DNA gyrase subunit A [Streptococcus infantis]
          Length = 175

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 173/420 (41%), Gaps = 33/420 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ +D +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 649  DHSTEQITYSDFINKELILFSM-ADNIRSIPSVIDGLKPGQRKVLYTMFKRNVRKDIKVV 707

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 708  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 765

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +      DG   EP       P +L+NG  GI  G +T
Sbjct: 766  RYIYTRLSPFARRLFHPADEPLL-VNNTDDGKVIEPETYVPVVPLILINGADGIGTGWST 824

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VV     ++   ++              P      G  G      TG G  
Sbjct: 825  SIPNYNPEDVVANLKRLMAGEEL-------------VPMKPWFRGFKG----EVTGSGD- 866

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ +TE+P +       +++ E+++  ++   I D +D +    
Sbjct: 867  --RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTN 924

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I++        +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 925  VHFIIQMDEKHMKKALEEGLEEKFKLIKPIATSNMVAFDAEGRITRYETPEDILQAFYAV 984

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  RR ++LL++ + +   L   A  V  + +   +I          +EL  +++  
Sbjct: 985  RIKLYERRKQHLLSQLQSQLDKLSNQARFVQMIIDGKLVI-SKKKKTILIQELKDKAFKP 1043


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 180/437 (41%), Gaps = 40/437 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 646  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 704

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 705  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASA 762

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 763  RYIYTRLSPFARRLFHQSDEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 821

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  +VVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 822  SIPNYNPEDVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 870

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P +       +K+ E+++  ++   I D +D +   
Sbjct: 871  IKQTADNEVE----------ITELPIRTWTQDFKDKLEEIIKADKVPSFIKDYKDYNTHT 920

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 921  NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 980

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++LL++ +     L   A  V  + +   +I         ++ L+ +   
Sbjct: 981  VRIKLYEKRKQHLLSELQTHLDKLSNQARFVQMIIDGKLVISKK------KKALLIQELQ 1034

Query: 424  ASDIKDLIDLIDDSSYT 440
                K    + D     
Sbjct: 1035 EKGFKPFPRVADTPEPG 1051


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/571 (19%), Positives = 196/571 (34%), Gaps = 85/571 (14%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFK 701

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 702  RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 759

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL + A  +        V+++ + DG   EP       P VLVNG
Sbjct: 760  LHGGKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNG 818

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +T+IP +N  E++     ++   ++                     G TG  
Sbjct: 819  TTGIGTGFSTSIPNYNPLEIISNLERLMQGEEV-------------HKMQPWYFGFTGTM 865

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                   G  V  G   I         + +TE+P  V      +K  E +REK +  +  
Sbjct: 866  E--EKEPGKFVSHGRYEIRPDG----VVCITELPIGVWTQTY-KKFLEDMREKEL--VVQ 916

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +   +   R    + + + N++A N  G   +    
Sbjct: 917  YREHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDA 976

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              +LK F   R +   +R +YLL + R     L  +   V  + E   ++          
Sbjct: 977  ESVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLE 1036

Query: 408  --------PNPETARRELMQRSWNASDIKDLIDL--IDDSSYTIGSDGTMYLSEVQTR-- 455
                    P P   +++L   +    D +   D    +D    +G        +      
Sbjct: 1037 DLQRRMYLPFPPHTKKKLSSTTVEEGDGEAAPDTQNSEDDVLGMGRAADGEADDGAAEPP 1096

Query: 456  ----------AILELRLARLTGLGRDDIRNE--------------------LNSLGIEIK 485
                       +L ++L  LT      +  +                    +  L +   
Sbjct: 1097 EVRRATRDYDYLLGMKLWSLTAEMIARLEAQMAKARRDTATMEARTPKETWMEDLKVLRT 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
                  + R   +  I  +   VK   DT R
Sbjct: 1157 RLESFYADREVEIATI--QRKKVKKPFDTRR 1185


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 179/421 (42%), Gaps = 35/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 648  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDVKVV 706

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 707  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 764

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 765  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLILINGADGIGTGWST 823

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  EVVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 824  SIPNYNPEEVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 872

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          +TE+P         +K+ E+++ +++   I D +D +   
Sbjct: 873  IKQTADNEVE----------ITELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 922

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 923  DVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 982

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +YLL++ + +   L   A  V  + +   +I          +EL ++ + 
Sbjct: 983  VRIKLYEKRKQYLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKGFK 1041

Query: 424  A 424
             
Sbjct: 1042 P 1042


>gi|295394162|gb|ADG03692.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 175

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD PAA+RYTE R+ K +  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLIMDNPDVTTRDLMEV 175


>gi|29839794|ref|NP_828900.1| DNA topoisomerase IV subunit A [Chlamydophila caviae GPIC]
 gi|29834141|gb|AAP04778.1| topoisomerase, subunit A, putative [Chlamydophila caviae GPIC]
          Length = 479

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 127/505 (25%), Positives = 214/505 (42%), Gaps = 47/505 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +++D  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +AV++N    L         PDF +G V+       + Y  G GSI +R    I  
Sbjct: 173 IAAQIAVLNNRAFTL--------LPDFYSGGVM-----DASEYQDGLGSITMRASIQI-- 217

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D++ +++ EI        ++  I    +   I    D   +       + I+L +G 
Sbjct: 218 --ADQKTLIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  IL  L+++T  Q + +    A+   KP   T+  IL+      E          L 
Sbjct: 274 YAKDILETLFQHTECQVVLTSKPTAIYNNKPVETTISEILRLHTEVLEGY--------LQ 325

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K     H  +       +L+ +    R          +L  +       + ++  +    
Sbjct: 326 KELQILHDELSQEHYYKSLEYIFIKHRLYDTVRENLSKLGNKVSQEDLHEAVLSSLSPFL 385

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            ++        +         L + ++          +L  +  +       L++   + 
Sbjct: 386 ASLPETPNKEATGQLA----SLAIKKILCFNESHYTKDLAKIEKKQAAVEKDLNN---MK 438

Query: 499 GIIKQELLSVKDELD--TPRRTRIV 521
               + L  +  +      R+T+++
Sbjct: 439 KFTIKYLKGLLAKYGELGKRKTQVL 463


>gi|227553418|ref|ZP_03983467.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177447|gb|EEI58419.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 198

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/194 (51%), Positives = 139/194 (71%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVA 204
           PTHNL E++DG V 
Sbjct: 185 PTHNLAEIIDGTVY 198


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 190/468 (40%), Gaps = 38/468 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V+ + K V
Sbjct: 649  DHSMDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVKKDIKVV 707

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 708  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 765

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 766  RYIYTRLSPFARRLFHQADEPLLANNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 824

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    ++       D L         P      G  G      TG G  
Sbjct: 825  SIPNYNPEDVVDNLKRLMAG-----DEL--------VPMKPWFRGFKG----EVTGSGD- 866

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ ++E+P +       +K+ E+++ +++   I D +D +    
Sbjct: 867  --RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 924

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 925  VHFIIQMEEKHMKKAVEEGLEEKFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAV 984

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R ++LL++ + +   L   A  V  + +   +I          +EL ++ +  
Sbjct: 985  RIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKALLIQELQEKGFKP 1043

Query: 425  -----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                    +       +         T  LS      +L + L  LT 
Sbjct: 1044 FPKVVDTPEPGEAGDVEDEEDEEETATAALSSDAYDYLLSMPLWSLTH 1091


>gi|260204186|ref|ZP_05771677.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
          Length = 257

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 2/232 (0%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
           + + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL 
Sbjct: 2   LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELA 61

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            + D     RRTRI+    D+ DED I RED+VVT++  GY KR    +YR+Q+RGGKG 
Sbjct: 62  EIVDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGV 121

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG+ + N+L+   
Sbjct: 122 QGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP 181

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            ERI  ++       +              V+ ++L   +Q  R+G +A+ L
Sbjct: 182 EERIAQVIQIRGYTDAPYLGAGHSQRAGEKVQADRL--RLQSLRAGIVAVNL 231



 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS- 786
            LA  ++   +  +   +A+  +    +     QR ++  +  EI     D      I+ 
Sbjct: 19  RLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAA 78

Query: 787 --EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +   ++L  +E  ++T++E G+ KRT +  +R   R GKG++   + + +    +   
Sbjct: 79  DGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDD---IVAHF 135

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIR 898
           F  + +D I+  + +G + R    ++  ASR  +G  + +      +ER+  V +IR
Sbjct: 136 FVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR 192


>gi|149346162|gb|ABR23652.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 151

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/151 (60%), Positives = 121/151 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDVA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD
Sbjct: 61  VYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           + PNYDG+   P V+  + PN+LVNG  GIA
Sbjct: 121 WVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 151


>gi|68010496|ref|XP_670772.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486339|emb|CAI03944.1| hypothetical protein PB301451.00.0 [Plasmodium berghei]
          Length = 267

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/253 (43%), Positives = 162/253 (64%), Gaps = 4/253 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
            V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++   ++KK Y KCAR
Sbjct: 6   DVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+ +  AA RYTE R+ 
Sbjct: 66  IVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEYN-AAAMRYTEARIS 124

Query: 137 KAAHFLL-DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              + +L D++  + +D+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HN+
Sbjct: 125 DFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNI 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            +V++  +  + N  I  D L  II  PDF TG +I+  +  +++ Y TG+G+IVIR   
Sbjct: 185 VDVINASINFLINEKITHDELFNIIXAPDFSTGGIIIANKDTLRDIYHTGKGNIVIRSNR 244

Query: 255 HIEKTSGDREQIV 267
             E    ++  I 
Sbjct: 245 FYEYAHKNKTDIH 257


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1272

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/514 (17%), Positives = 186/514 (36%), Gaps = 36/514 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  + S+ I+D +    + +++     R+IP + DGLKP  R++LFG  +  +    K  
Sbjct: 759  DHDVQSLPISDFVNKELILFSM-ADNIRSIPSVADGLKPGQRKVLFGCFKRNLTKEIKVA 817

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G A++   +  +AQ++  S  + L++  G FG+    G   A+ 
Sbjct: 818  QLAGYVSEKTAYHH--GEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLAGGKDAASA 875

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L +    +        +++    DG   EP       P VL+NG  GI  G +T
Sbjct: 876  RYIFTNLPRMTRAIFHPADDGLLNYLVE-DGMSIEPDYFMPTVPMVLINGADGIGTGWST 934

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP +N  ++V+    ++   + +                    G  G        +  +
Sbjct: 935  AIPNYNPVDIVENLRRMMRGEEPE-------------KMTPWFRGFKGFIERIDQDKYKV 981

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
                   IE    +   + +TE+P +       E + E+    +K    I D  +     
Sbjct: 982  SGI----IE--KINDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIKDYEEHHTDT 1035

Query: 307  GYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                 + +     AD         ++ T+     ++    LNG   +  +   IL+ F  
Sbjct: 1036 TVHFRVHMTEKNLADAEKEGFDKRFKLTTSLGTGNMVCFDLNGKIKKYASPEEILEEFFH 1095

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R E    R ++L ++   +   L   A  V  +     ++     P+    EL    + 
Sbjct: 1096 KRLEFYGHRKQHLADELNRQFERLSNQARFVHMIITKELVVSGKRRPDIV-AELRSLKFK 1154

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                K+      ++      +            +L + +  LT    + +  E ++   E
Sbjct: 1155 PFPKKERAKEEGENEAAEEEEDGDEGQASDYDYLLGMAIWSLTSEKVEKLLAERDAKEQE 1214

Query: 484  IKECLDILSS---RSRLLGIIKQELLSVKDELDT 514
            + E L +  +      L   + +  L+++ ++  
Sbjct: 1215 LIELLKLSPNNIWDRDLDNFLAEWQLALEADIAD 1248


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 101/511 (19%), Positives = 185/511 (36%), Gaps = 49/511 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                  E+    +  +D +    + +++   L R+IP + DGLKP  R+ILF   +  +
Sbjct: 378 FQPGTHLEQKNKLIKYSDFINKELILFSV-ADLQRSIPSMVDGLKPAQRKILFSCFKRNL 436

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
             + K V+      E    +H  G  ++   +  MAQ++  S  + L+  +G FG+    
Sbjct: 437 VKDLKVVQLQGYVSEQSAYHH--GEQSLQSTIVGMAQNFVGSNNINLLAPKGQFGTRCSG 494

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G   A+ RY    L     FL        +D+    DG   EP       P VLVNG  G
Sbjct: 495 GKDHASPRYIYTCLSPITRFLFPKDDDCLLDYLQE-DGLSIEPTWYAPIIPLVLVNGCEG 553

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI--KN 239
           I  G +T IP +N  ++V      ++   ++             P      G  G   K+
Sbjct: 554 IGTGWSTFIPNYNPRDIVANLRRFLNGEKME-------------PMHPWYKGFKGTIEKS 600

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI--------AELVREK 291
           A   G GS  + G+  IE+   +   + +TE+P +       + +         E     
Sbjct: 601 ASKEGGGSYAVNGI--IEEV--NETTVRITELPIRRWTDEYKDFLNSVIENVRDEKGNLP 656

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYK 348
           +   I D R   D       + L       V    L   ++  +  S  ++++    G  
Sbjct: 657 KDAFIKDFRKYGDDVSVCFEVLLSEEKMKQVKDEGLLKKFKLATTISTSNMHLFDPKGVI 716

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
            +  +   IL+ FV  R E+  +R  + L      A +L      +  +     II  + 
Sbjct: 717 KKYDSPEEILEEFVHLRFELYEKRKNFKLASLEMEALILENKVRFILGVVTG-EIIVNNR 775

Query: 409 NPETARRELMQRSWNA----SDIKDLIDLIDDSSYTIGSDGTMY---LSEVQT---RAIL 458
                  EL Q+ +        ++ ++    D +    S   +     + VQ      +L
Sbjct: 776 KRAELLLELRQKGFTPFPKNKPVEAVVAGAADDTEESESTEDVEENSKTGVQATDYEYLL 835

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            + +  LT      +  + + +  E++    
Sbjct: 836 SMSIGTLTLEKVQKLCADKDKISEEVENLRR 866


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/522 (20%), Positives = 194/522 (37%), Gaps = 58/522 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +       K  T ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 681  HGLPDVYLYGKSTTYLTYNDFINKELVLFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 739

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+ 
Sbjct: 740  N---DKREVKVAQLAGSVAEMSSYHHGETSLMMTIINLAQNFVGSNNLNLLQPIGQFGTR 796

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A      L  + + F  + D    EP       P VL+NG
Sbjct: 797  LHGGKDSASPRYIFTMLSPLARLAFPVLDDNVLKFLFD-DNQRVEPEWYIPIIPMVLING 855

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +  IP +++ EVV+    ++D  +            P  P      G     
Sbjct: 856  AEGIGTGWSCKIPNYDVREVVNNIRRMLDGDE----------PLPMMPNYKNFKGTID-- 903

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
               + G+   V+ G   I     D   I ++E+P +       E++ E +    EK    
Sbjct: 904  ---SVGQNQYVVNGEVSII----DSTTIEISELPVRTWTQVYKEQVLEPMLNGTEKTPPL 956

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D ++       R VI++     A+     L++   LQS  +   + L  +     +  
Sbjct: 957  ITDYKEYHTDTTVRFVIKMSEQKLAEAEAAGLHKVFKLQSSLACPNMVLFDHIGCLKKYE 1016

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVANLDEV- 400
            T   IL+ F   R      R  +L+           N+AR     + G  +      +  
Sbjct: 1017 TAEDILREFYELRLRYYSLRKDWLVGMLGAESAKLNNQARFILEKIEGKIVIENKPKKEL 1076

Query: 401  --VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
              V I R   +    + +  Q+  +  D  +  +   ++     +             +L
Sbjct: 1077 IKVLIQRGYDSDPVKKWKESQQKGSDDDSNEEGESEKENEPDASTGPDFG-------YLL 1129

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
             + L  LT   +D++  + +    E++       S   L   
Sbjct: 1130 NMPLWYLTKEKKDELCKQRDDKETELETLKR--KSPDDLWRH 1169


>gi|14289141|gb|AAK57747.1| topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 165

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/165 (53%), Positives = 121/165 (73%), Gaps = 1/165 (0%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPH
Sbjct: 1   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLG 147
           G++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K A  LL +LG
Sbjct: 61  GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELG 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           + TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 121 QGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 165


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/469 (22%), Positives = 197/469 (42%), Gaps = 52/469 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 646  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 704

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 705  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 762

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 763  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 821

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGS 247
            +IP +N  +VVD    ++   ++           P  P      G  TG  + Y    G 
Sbjct: 822  SIPNYNPEDVVDNLKRLMAGEEL----------VPMKPWFRGFKGEVTGSGDRYKFS-GI 870

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQ 306
            I     + +E          ++E+P +       +K+ E+++ +++   I D +D +   
Sbjct: 871  IKQTADNEVE----------ISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHT 920

Query: 307  GYRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVA 363
                +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A
Sbjct: 921  NVHFIIQMEEKHMKKALEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYA 980

Query: 364  FREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LDEVVRIIRFSP 408
             R ++  +R ++LL           N+AR    ++ G  +        L + ++   F P
Sbjct: 981  VRIKLYEKRKQHLLSELQTQLDKLSNQARFIQMIIDGKLVISKKKKALLIQELQEKGFKP 1040

Query: 409  NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
             P+ A          A DI++  +  +  + T+ SD   YL  +   ++
Sbjct: 1041 FPKVADTP---EPGEAGDIEEDEEEEETVTATLASDAYDYLLSMPLWSL 1086


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/572 (19%), Positives = 198/572 (34%), Gaps = 86/572 (15%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFK 701

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 702  RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 759

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL + A  +        V+++ + DG   EP       P VLVNG
Sbjct: 760  LHGGKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNG 818

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +T+IP +N  E++     ++   ++                     G TG  
Sbjct: 819  TTGIGTGFSTSIPNYNPLEIISNLERLMRGEEV-------------HKMQPWYFGFTGTM 865

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                   G  +  G   I         + +TE+P  V   A  +K  E +REK +  +  
Sbjct: 866  E--EKEPGKFISHGRYEIRPDG----VVCITELPIGVWTQAY-KKFLEDMREKEL--VVQ 916

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +   +   R    + + + N++A N  G   +    
Sbjct: 917  YREHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDA 976

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              +LK F   R +   +R +YLL + R     L  +   V  + E   ++          
Sbjct: 977  ESVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLE 1036

Query: 408  --------PNPETARRELMQRSWNASDIKDLID----------------------LIDDS 437
                    P P   +++L   +    D +   D                        +  
Sbjct: 1037 DLQRRMYLPFPPHTKKKLSSTTVEEGDDEGAPDAQNSEEDVLGVGNAADSGADDGAAEPP 1096

Query: 438  SYTIGSDGTMYLSEVQTRAILELRLAR----LTGLGRDDIRNE--------LNSLGIEIK 485
                 +    YL  ++  ++    +AR    +    RD    E        +  L +   
Sbjct: 1097 EMRRATRDYDYLLGMKLWSLTAEMIARLEAQMARARRDTAAMEARTPKDMWMEDLKVLRT 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +     + R   +  I  +   VK      RR
Sbjct: 1157 KLESFYADREVEIATI--QRKKVKKPF-DARR 1185


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 191/517 (36%), Gaps = 51/517 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   +   
Sbjct: 203 DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNEC 258

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
           K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 259 KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 318

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 319 ARYIFTKLASSTRSIFNEFDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYS 377

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           + IP +N  ++++     ID             + P  P              Y   +G 
Sbjct: 378 SFIPNYNYKDIINNIKKYID-------------KEPLVPMVPW----------YKDFKGR 414

Query: 248 IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           I   G S  E        D E + +TE+P +       E + EL+ +++   I D  D S
Sbjct: 415 IESNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLILDYIDNS 474

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKA 360
             +     I++            L +   L+S  +   + L           + + ILK 
Sbjct: 475 SHEDVCFTIKMDPVKLKKAEEEGLEKVFKLKSTLTTTNMTLFDSNLKLQRYASELDILKD 534

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F   R      R  YL++K      ++      +  +     ++      +    EL ++
Sbjct: 535 FCFHRLNAYNERKSYLISKLEKEKRIISNKTKFILAIING-ELVVNKKKKKILVEELYRK 593

Query: 421 SWNA---------SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            ++           +I +   L    +     +    ++      +L + +  LT    +
Sbjct: 594 GYDPYKDIHKVKKEEIFEQELLEAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLEKVE 653

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           ++  +L     E++    I +  +  L  I++   ++
Sbjct: 654 ELLAQLKEKEQELEILKSI-TVETMWLKDIEKVEEAI 689


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/563 (19%), Positives = 195/563 (34%), Gaps = 74/563 (13%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +V+ ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KANTNINESMNYNVRNVTYSEFVHKELILFSV-ADCERSIPSVVDGLKPGQRKIMFSAFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K  + A    E    +H  G  ++   +  +AQD+  +  + L+  +GQ    
Sbjct: 706  RNLVRSIKVAQLAGYVSEHAAYHH--GEQSLVQTIVGLAQDYVGANNIPLLHRDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A  +        VD++ + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTNIARRIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  +V+D    +     +  D L         P      G TG  
Sbjct: 823  TAGIGTGFATNIPNYSPLDVIDNLRRL-----LSGDDLR--------PMKPWYFGFTGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  +G  V  G   +         + +TE+P     +   + + +L        +  
Sbjct: 870  E--EREKGKFVSSGRYTVRPDG----VVCITELPIGTWTSQYKKFLEDLRER---EVVVQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLY--RYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + +                +    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFIHPEVLQQWTNQGCLEDKLQLREYIHATNIIAFDREGRITKYLDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   RR ++LL + +     L  +   V  +     ++   P  +   
Sbjct: 981  ESVLKEFYLVRLEYYARRREFLLEQLQRSVLKLENMVRFVNEVVNGTFVVTRRP-MKEVL 1039

Query: 415  RELMQRSW-------------------------------NASDIKDLIDLIDD----SSY 439
             +L QR +                               N++D ++ I L  D    SS 
Sbjct: 1040 ADLQQRGYTPFPPQQKKKVSSTTINDGEEEEAERRHAAANSADAEEAIVLQPDELMGSSE 1099

Query: 440  TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS-SRSRLL 498
              G    +  S      +L LRL  LT      +   L  L     +   I   S   L 
Sbjct: 1100 GEGEAPALKRSARDYDYLLGLRLWNLTAEMSARL---LAQLEAARAKYETIAKCSPKDLW 1156

Query: 499  GIIKQELLSVKDELDTPRRTRIV 521
                  L    ++L   R   I 
Sbjct: 1157 REDLDLLQPEMEKLFDERTKEIA 1179


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/574 (19%), Positives = 217/574 (37%), Gaps = 56/574 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       K   +++  D +    + ++ N+   R+IP + DGLKP  R++LF  ++  +
Sbjct: 683  LPEPYLYGKDTRAITYHDFVHKELVLFS-NLDNERSIPSVVDGLKPGQRKVLFTCLKRNL 741

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
                K  + A    E+   +H  G  ++   +  +AQ++  S  L L++  G FG+    
Sbjct: 742  IREIKVAQLAGSVAELSAYHH--GEQSLMSTIIGLAQNFVGSNNLNLLQPIGQFGTRLSG 799

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L      +        +++  + D    EP       P VLVNG  G
Sbjct: 800  GKDAASPRYIFTALNSLTRLIFHLEDDPLLNYLYD-DNQRIEPEWYAPIIPMVLVNGADG 858

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G AT+I  +N+ E+++    ++D  +               P      G      + 
Sbjct: 859  IGTGYATHILNYNVIEIINNLYRMLDGEE----------PHRMLPNFRGFTGTIEDLGS- 907

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIAD 298
                     R V + E    D + + +TE+P +V      E + E +    EK    I D
Sbjct: 908  --------NRYVCYGEVAVLDDDTLEITELPIRVWTQNYKESVLEPMLNGSEKVPACITD 959

Query: 299  LRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
             ++       R VI++      +     L++ ++  ++ S  S+      G        I
Sbjct: 960  YKEYHTDVTVRFVIKMSPEKLREAESTGLHKFFKLQTVMSTGSMVCFDPLGCLKCYPNEI 1019

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             I++ F   R     +R  YL       A  L   A  V    + + +I   P  +   R
Sbjct: 1020 IIIREFYELRLTWYEKRKVYLEGVLSAEARKLENQARFVLEKIQSIMVIENKP-KKELIR 1078

Query: 416  ELMQRSWNASDIKDLIDLIDDSS---YTIGSDGTMYLSEVQT--------RAILELRLAR 464
             L + ++++  +K   + ID ++       +     +S+ +           IL + L  
Sbjct: 1079 MLKEANYDSDPVKAWKESIDKAAALQEQEEARTDEAVSQTEAVEAGQPDYNYILNMPLWS 1138

Query: 465  LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
            LT   +DD+  + ++   E+        S S L    +++L  +++E         VE  
Sbjct: 1139 LTKERKDDLLAQRDAKQKELLILKS--KSPSDLW---REDLKKLEEEYKK------VEAE 1187

Query: 525  LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            L  +++  I   D  + ++      RV  +  R 
Sbjct: 1188 LAADEQAAIEAADKKLKIASTTTAGRVAATKSRK 1221


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 173/438 (39%), Gaps = 39/438 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+   +  V  + K V
Sbjct: 675  DHTTEEITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTCFKRNVRKDIKVV 733

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 734  ELAGYVSGMTA--YQHGDVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASA 791

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  +     +  + +  + DG   EP +     P VL+NG  GI  G +T
Sbjct: 792  RYIYTRLSPFARRIFHPADEPLLTYNVD-DGHTIEPEIYVPVVPLVLINGADGIGTGWST 850

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  ++V     ++D               P  P      G TG   +    R   
Sbjct: 851  SIPNYNPEDIVANLKCLMDGE-------------PLVPMQPWFRGFTGEVVSLGGERYKF 897

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R       +     ++ +TE+P +       +++ E+++ +++   I D +D +    
Sbjct: 898  SGR------ISQVGENEVEITELPIRCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTK 951

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               VI+L    +A  I   L  ++   +++ + N+VA +  G   +  +   IL+ F + 
Sbjct: 952  VHFVIQLDEKHAAKAIAEGLEEKFKLSKTIATSNLVAFDPEGRITKYDSPEDILREFYSV 1011

Query: 365  REEVVVRR-------TKYLLNKARDRA-HVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            R +   +R       T+  + K R +     + +   +    E +            + +
Sbjct: 1012 RIKFYEKRKMPLWSLTQERVEKLRRQIGEKEIEVDNLIKLSKEDIWRKDLDDFIAEWKFQ 1071

Query: 417  LMQRSWNASDIKDLIDLI 434
            L       +     +  +
Sbjct: 1072 LEDEGRRRAKSAKSVRRV 1089


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 182/436 (41%), Gaps = 38/436 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V+ + K V
Sbjct: 646  DHSMDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVKKDIKVV 704

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 705  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 762

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 763  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 821

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    ++       D L         P      G  G      TG G  
Sbjct: 822  SIPNYNPEDVVDNLKRLMAG-----DEL--------VPMKPWFRGFKG----EVTGSGD- 863

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ ++E+P +       +K+ E+++ +++   I D +D +    
Sbjct: 864  --RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 921

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 922  VHFIIQMEEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAV 981

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R ++LL++ + +   L   A  V  + +   +I         ++ L+ +    
Sbjct: 982  RIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKK------KKALLIQELQE 1035

Query: 425  SDIKDLIDLIDDSSYT 440
               K    ++D     
Sbjct: 1036 KGFKPFPKVVDTPEPG 1051


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 102/538 (18%), Positives = 204/538 (37%), Gaps = 48/538 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I ++ I+D +    + +++     R+IP + DGLKP  R+++F   +  ++   K  
Sbjct: 645  DHRIRNIPISDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVIFSCFKRKLKTEIKVH 703

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            +      E    +H  G+ A+   +  +AQD+  S  + L+   G FGS  + G   A+ 
Sbjct: 704  QLQGYVSEHSAYHH--GDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDAASA 761

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    + +    +     +  +++  + DG   EP       P VL+NG  GI  G +T
Sbjct: 762  RYIFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEGIGTGWST 820

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             +P +N  EVVD     +   +               P      G  G       G    
Sbjct: 821  FVPNYNPREVVDNLRRRMAGEEY-------------VPMNPWYRGFVG--GIEPAGPERF 865

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G++       D     +TE+P +V      E + E V   +K    + + ++     
Sbjct: 866  RVTGIAR----QLDERTWEITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYKEYHTDT 921

Query: 307  GYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                V+EL      ++     +  ++ +++ S  ++ +    G   +  T   IL+ F  
Sbjct: 922  SVHFVVELNPRGMEEIERVGPDTFFKLSTMLSTSNMVLFNPEGKIKKYATPQEILEDFYF 981

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR----RELMQ 419
             R     RR ++L+++ +     L   A  V+ +  + R +  S   + A     R+L  
Sbjct: 982  VRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMI--IARELSVSNKKKAAIVEELRQLKF 1039

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++   + K    + +++            S      +L + +  LT    + +  E + 
Sbjct: 1040 QAFPKVEAKAK-SVTEEAVEDQEEPDEPANSNTDYDYLLSMAIYSLTQERVERLLKERDH 1098

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
               E+K  L    S   L     ++L +  +E D      + E   +       V +D
Sbjct: 1099 TETELKILLG--RSPQNLWD---EDLTAFLEEWDEK----LAEDARNASMTTTHVVKD 1147


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 199/572 (34%), Gaps = 86/572 (15%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFK 701

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 702  RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 759

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL + +  +        V+++ + DG   EP       P VLVNG
Sbjct: 760  LHGGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNG 818

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +T+IP +N  E++     ++   ++                     G TG  
Sbjct: 819  TTGIGTGFSTSIPNYNPLEIISNLERLMRGEEV-------------HKMQPWYFGFTGTM 865

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                   G  V  G   I         + +TE+P  V   A  +K  E +REK +  +  
Sbjct: 866  E--EKEPGKFVSHGRYEIRPDG----VVCITELPIGVWTQAY-KKFLEDMREKEL--VVQ 916

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +   +   R    + + + N++A N  G   +    
Sbjct: 917  YREHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDA 976

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              +LK F   R +   +R +YLL + R     L  +   V  + E   ++          
Sbjct: 977  ESVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLE 1036

Query: 408  --------PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS---------------- 443
                    P P   +++L   +    D +   D  +     +G                 
Sbjct: 1037 DLQRRMYLPFPPYTKKKLSSTTVEEGDGEGAPDAQNSEEDVLGMGNAADGGADDGAAEPP 1096

Query: 444  ------DGTMYLSEVQTRAILELRLAR----LTGLGRDDIRNE--------LNSLGIEIK 485
                      YL  ++  ++    +AR    +    RD    E        +  L +   
Sbjct: 1097 EVRRATRDYDYLLGMKLWSLTAEMIARLEAQMDRARRDTATMEARTPKDMWMEDLKVLRT 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +     + R   +  I  +   VK      RR
Sbjct: 1157 KLESFYADREVEIATI--QRKKVKKPF-DARR 1185


>gi|28916594|gb|AAO59530.1| gyrase A [Bacillus subtilis subsp. spizizenii]
          Length = 217

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/217 (54%), Positives = 160/217 (73%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE  + K +  +L D+ KDT+D++  Y+G  ++PVV+ +R+PN+LV G  G A GMA
Sbjct: 1   MRYTEAGMSKISMEILRDITKDTLDYQDTYEGPERDPVVMPSRFPNLLVTGAAGFAEGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            NIP H LG+++DG +A  +NP   +  LME I GPDFPT   I G +GI+ AY TGRGS
Sbjct: 61  PNIPPHQLGKIIDGVLAESENPGHTIRELMEFIPGPDFPTAGQIFGPSGIRKAYETGRGS 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + I++TS  +E+IVVTEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 121 ITIRAKAEIDQTSSGKERIVVTEIPYQVNKANLIEKIADLVRDKKIEGITDLRDESDRTG 180

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            R+VIE++R A+A+VILN LY+ T+LQ+ F +N +AL
Sbjct: 181 MRIVIEIRRDANANVILNNLYKQTALQASFGINRLAL 217


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 94/436 (21%), Positives = 181/436 (41%), Gaps = 38/436 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 646  DHSMDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 704

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 705  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 762

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 763  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 821

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    ++       D L         P      G  G      TG G  
Sbjct: 822  SIPNYNPEDVVDNLKRLMAG-----DEL--------VPMKPWFRGFKG----EVTGSGD- 863

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ ++E+P +       +K+ E+++ +++   I D +D +    
Sbjct: 864  --RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTN 921

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I+++       +   L  ++  ++ + + NMVA +  G      T   IL+AF A 
Sbjct: 922  VHFIIQMEEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDPEGRITRYETPEDILRAFYAV 981

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R ++LL++ + +   L   A  V  + +   +I         ++ L+ +    
Sbjct: 982  RIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVISKK------KKALLIQELQE 1035

Query: 425  SDIKDLIDLIDDSSYT 440
               K    ++D     
Sbjct: 1036 KGFKPFPKVVDTPEAG 1051


>gi|47419992|gb|AAT27348.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 114/280 (40%), Positives = 171/280 (61%), Gaps = 26/280 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V
Sbjct: 2   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTV 61

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +        
Sbjct: 62  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAK-------- 113

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 114 ------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLD 155

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 156 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 215

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +
Sbjct: 216 KRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT 255


>gi|312877897|ref|ZP_07737842.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795323|gb|EFR11707.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 237

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/297 (25%), Positives = 144/297 (48%), Gaps = 61/297 (20%)

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS QA+G A++N++ + + E+IT  M   + +      Y++  TK+G +++  LS+F
Sbjct: 1   MPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDFKEG----YLMMCTKNGTIKKVLLSEF 56

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +RV   R++ GV+
Sbjct: 57  ENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVMG-RSAQGVK 115

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++L  GD ++ M                                               
Sbjct: 116 GMTLESGDFIVGM----------------------------------------------- 128

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E     +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V + 
Sbjct: 129 ------EKANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIK 180

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
            VND+D+I++ S +G  IR+ V+++ +  R T+GV +     D  +V S+ RI+  E
Sbjct: 181 MVNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDGDSIKVSSIARIKAEE 237



 Score = 42.2 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +     + D       D +V VS  GY      +  R   R  +G  G+ +   DF+  +
Sbjct: 69  LADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVMGRSAQGVKGMTLESGDFIVGM 128

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              +    +L  +  GF  + ++         A+G  L   ++   G +I  I    +D+
Sbjct: 129 EKANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGV-LTYKVTDKTG-KIVDIKMVNDDD 186

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRD 682
                  ++  +  G   R ++S      R+  G   M++D   
Sbjct: 187 E------IMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDGDS 224


>gi|289573609|ref|ZP_06453836.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
 gi|289538040|gb|EFD42618.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
          Length = 252

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 2/232 (0%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
           + + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL 
Sbjct: 2   LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELA 61

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            + D     RRTRI+    D+ DED I RED+VVT++  GY KR    +YR+Q+RGGKG 
Sbjct: 62  EIVDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGV 121

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG+ + N+L+   
Sbjct: 122 QGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP 181

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            ERI  ++       +              V+ ++L   +Q  R+G +A+ L
Sbjct: 182 EERIAQVIQIRGYTDAPYLGAGHSQRAGEKVQADRL--RLQSLRAGIVAVNL 231



 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS- 786
            LA  ++   +  +   +A+  +    +     QR ++  +  EI     D      I+ 
Sbjct: 19  RLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAA 78

Query: 787 --EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +   ++L  +E  ++T++E G+ KRT +  +R   R GKG++   + + +    +   
Sbjct: 79  DGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDD---IVAHF 135

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIR 898
           F  + +D I+  + +G + R    ++  ASR  +G  + +      +ER+  V +IR
Sbjct: 136 FVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIR 192


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 174/420 (41%), Gaps = 33/420 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 646  DHSMDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 704

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 705  ELAGYVSGMTA--YQHGDNSLHTTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 762

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P +L+NG  GI  G +T
Sbjct: 763  RYIYTRLSPFARRLFHQADEPLLVNNVD-DGKVIEPETYVPVVPLILINGADGIGTGWST 821

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  +VVD    ++             +     P      G  G      TG G  
Sbjct: 822  SIPNYNPEDVVDNLKRLM-------------VGDELVPMKPWFRGFKG----EVTGSGD- 863

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ ++E+P +       +K+ ++++ +++   I D +D +    
Sbjct: 864  --RYKFSGIIKQTGDNEVEISELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKDYNTHTN 921

Query: 308  YRVVIELKRGASADVILNQL-YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
               +I++        +   L  ++  ++ + + NMVA +  G      T   IL+AF   
Sbjct: 922  VHFIIQMDEKHMKKAVEEGLEEKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYTV 981

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R ++  +R ++LL++ + +   L   A  V  + +   +I           EL ++ +  
Sbjct: 982  RIKLYEKRKQHLLSELQTQLDKLSNQARFVQMIIDGKLVI-SKKKKAILIEELQEKGFKP 1040


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 92/535 (17%), Positives = 187/535 (34%), Gaps = 48/535 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++    +S T+ +    + +++   L R+IP + DGLKP  R+ILF   +   
Sbjct: 659  FEPGTHLDQKEKYISYTEFVNKELILFSM-ADLQRSIPSMLDGLKPGQRKILFCAFKRNF 717

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVD 121
                K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG  ++ 
Sbjct: 718  VKEAKVSQFSGYVSEHSAYHH--GEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMG 775

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   RL   A FL         D+  N DG + EP       P VL+NG  G
Sbjct: 776  GKDHASSRYIYTRLSPIARFLFPKEDDTIHDYL-NEDGQYIEPTWYVPIVPMVLINGSEG 834

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G ++ +P +N  ++V     ++++              P  P      G  G     
Sbjct: 835  IGTGWSSYVPNYNPRDLVANVRRLLNDE-------------PMEPMDPWYKGFKGTIEKT 881

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIAD 298
            AT            IE+   +   + ++E+P   +  +    LE +     + +   I +
Sbjct: 882  ATKEAGATYTVTGIIEEV--NETTLRISELPVRRWTEDYKQFLESMTVSNDKAKDPFIKE 939

Query: 299  LRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            +R   D       + +            L + ++  +  S  ++++   NG   +     
Sbjct: 940  VRAYGDENSVCFEVIMSEENLILAQQEGLLKKFKLATTISTSNMHLFDSNGKIKKYDNPE 999

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE---T 412
             IL+ F   R E   +R K LL         +      +  + +V  I+      +    
Sbjct: 1000 DILEEFYHVRLEYYEKRKKALLEILELELLRIENKVKFILGVVKVEIIVNNRKRADLLLE 1059

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             + +          ++ ++    D +     +    +       +L + +  LT     +
Sbjct: 1060 LKEKGFTPFPKKKAVEAVVADTSDDAEDSEEELNRGVRAGDYDYLLSMPIGTLTLEKVQE 1119

Query: 473  IRNELNSL----------------GIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            +  E + L                  ++      L  + ++    ++    +K +
Sbjct: 1120 LCAERDQLNGEVEDMRNATPKLLWLKDLDVLEKQLDEQDKIDIQAEEAREKIKKK 1174


>gi|190888754|gb|ACE96002.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 159

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 91/159 (57%), Positives = 119/159 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GI
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGI 159


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 188/513 (36%), Gaps = 58/513 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++    +  +D +    + +++   L R+IP + DGLKP  R+ILF   +   
Sbjct: 663  FQPGTYLDQKEKLIKYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNF 721

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
                K  + +    E    +H  G  ++   +  MAQD+    ++ LLL  GQ       
Sbjct: 722  IKEAKIAQFSGYVSEHSAYHH--GEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQG 779

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   RL     FL        +D+  N DG   EP       P VLVNG  G
Sbjct: 780  GKDHASARYIYTRLSPITRFLFPKDDDILLDYL-NEDGQSIEPTWYVPTIPMVLVNGSEG 838

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
            I  G +++IP +N  +++     +++        +ME       P      G  G I+  
Sbjct: 839  IGTGWSSSIPNYNPRDIIANVRRLLNG------EMME-------PMDPWYRGFRGTIEKT 885

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIA 297
              T + S+       IE+   +   + ++E+P   +  +    LE I     + +   I 
Sbjct: 886  DPTKQESVGYTVKGIIEEV--NETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFIK 943

Query: 298  DLRDESDRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            D ++ +D       + +       +    L Q ++ T+  S  ++++   NG   +  T 
Sbjct: 944  DYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNMHLFDSNGTIKKYETP 1003

Query: 355  IGILKAFVAFREEVVVRRT------------------KYLLNKARDRAHVLVGLAIAVAN 396
              IL+ F   R E   +R                   +++L   R    ++     A  +
Sbjct: 1004 EQILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVVRGEI-IVSNRKRA--D 1060

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            L   +    F+P P+ ++   +  +    D ++  +  D  S                  
Sbjct: 1061 LFHELHQKGFTPFPKKSKSVEIAVAGATDDTEEAEENTDAVSKGGVRATDY-------EY 1113

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +L + +  LT     ++  + + L   + +   
Sbjct: 1114 LLSMAIGTLTLEKVQELCADRDKLNKGVDDLKK 1146


>gi|47419996|gb|AAT27350.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 111/281 (39%), Positives = 171/281 (60%), Gaps = 26/281 (9%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RR
Sbjct: 1   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRR 60

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +            
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------ 108

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL 
Sbjct: 109 --------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILK 154

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP
Sbjct: 155 SETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVP 214

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +
Sbjct: 215 SKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 255



 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 78/204 (38%), Gaps = 9/204 (4%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ DE++++   + +N     + + +     + A 
Sbjct: 58  IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAKFGLTELQAN 117

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            +   +     R   L +      +A ++   A  DE +     +    R    +     
Sbjct: 118 AILDMKLG---RLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDELKEIRSKF 174

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A    
Sbjct: 175 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 234

Query: 834 KINEIGALVAVFPVNDNDQIILVS 857
             +    + + F  N +D ++ V+
Sbjct: 235 DDD---FIESFFTANTHDTLMFVT 255


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 99/500 (19%), Positives = 197/500 (39%), Gaps = 39/500 (7%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +  +    K    ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 676  HGLPEEYLYGKSTKYLTFNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 734

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+ 
Sbjct: 735  N---DKREVKVAQLAGSVAEMSAYHHGEISLMMTIINLAQNFVGSNNVNLLQPIGQFGTR 791

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   L  + + F  + D    EP       P VLVNG
Sbjct: 792  LHGGKDAASPRYIFTMLSPLARLLFPALDDNVLKFMYD-DNQKVEPEWYIPIIPMVLVNG 850

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +  +P ++  E+V+    ++D                D P   +   +    
Sbjct: 851  AEGIGTGWSCKLPNYDTREIVNNIRRMLDG---------------DEPQQMLPSYKNFKG 895

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G    ++ G    E +  D   I ++E+P +       E++ E +    EK    
Sbjct: 896  VIQELGPNQFILNG----EVSVLDSTTIEISELPARTWTQNYKEQVLEPMLNGTEKTPPL 951

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D ++       R ++++     A+     L++   LQ+  + N + L  +     +  
Sbjct: 952  ITDYKEYHTDTTVRFLVKMTEQKLAEAEAAGLHKVFKLQASLTCNSMVLFDHVGCLRKYE 1011

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T++ IL+ F   R +    R  +L+      A  L   A  +    E   +I   P  + 
Sbjct: 1012 TVLDILREFFDLRVKYYSLRKDWLVGMLTAEASKLSNQARFILEKIEGKIVIENKP-KKE 1070

Query: 413  ARRELMQRSWNASDI---KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
              + L+QR +++  +   K   +  +        +     +      +L + L  LT   
Sbjct: 1071 LIQMLVQRGYDSDPVKTWKQTQEKEEAGELIEEEEAEANATGPDFNYLLSMPLWYLTKEK 1130

Query: 470  RDDIRNELNSLGIEIKECLD 489
            ++++  + ++   E+++   
Sbjct: 1131 KEELCKQRDTKNTELQDLKR 1150


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 105/515 (20%), Positives = 203/515 (39%), Gaps = 46/515 (8%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            EH +  +    +   S+S  D +    + ++ +    R+IP + DGLKP  R+++F   +
Sbjct: 676  EHNLPEEYLYGQETKSLSYHDFINKELVLFSNS-DNERSIPCMVDGLKPGQRKVVFCCFK 734

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+
Sbjct: 735  RN---DKREVKVAQLAGSVAEMSAYHHGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGT 791

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS-FQEPVVLCARYPNVLV 176
                G   A+ RY    L   A  L   +  + + +  NYD +   EP       P VL 
Sbjct: 792  RLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKY--NYDDNLRVEPEWYMPIIPLVLA 849

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-T 235
            NGG GI  G A+ IP +++ E+++    +++  +            P  P+     G   
Sbjct: 850  NGGEGIGTGWASRIPNYDVREIINNIHRMLNGEE----------PLPMLPSYKGFKGTID 899

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKR 292
             +        G + I   + IE          +TE+P +       E + E++    EK 
Sbjct: 900  ELAKNQYVNNGEVAIIDSTTIE----------ITELPVKTWTQTYKENVLEVMLNGTEKV 949

Query: 293  IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---P 349
               I D ++       R V+++      +     L++   LQ+L + N + L  +     
Sbjct: 950  PALITDYKEYHTDTTVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGSLK 1009

Query: 350  ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            +  ++  ILK F   R +  V R  +L+      +  L   A  +    +   +I   P 
Sbjct: 1010 KYESVQDILKEFFELRMKYYVLRKDWLVGMLGAESAKLSNQARFILEKIQGTLVIENKP- 1068

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL----SEVQTRAILELRLARL 465
             +   R L Q  +++  +K   D  +        D         S      +L + +  L
Sbjct: 1069 KKELIRMLQQMGYDSDPVKAWKDAQEKEEEEDAEDDDEKEKEDTSGPDYNYLLSMPMWYL 1128

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            T   +D++  + ++   E+      + + + L   
Sbjct: 1129 TKEKKDELCKQRDAKMTELNTLK--MKAPADLWKE 1161


>gi|47419974|gb|AAT27339.1| DNA gyrase A [Campylobacter jejuni]
          Length = 264

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 115/290 (39%), Positives = 175/290 (60%), Gaps = 26/290 (8%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ 
Sbjct: 1   IRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKT 60

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +       
Sbjct: 61  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------- 113

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI   
Sbjct: 114 -------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEITRL 154

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY
Sbjct: 155 EEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGY 214

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G 
Sbjct: 215 IKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQ 264



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ++T++ +G+ KR  S  +    R GKG  A      +    + + F  N +D ++ 
Sbjct: 202 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDD---FIESFFTANTHDTLMF 258

Query: 856 VSDKGT 861
           V+D+G 
Sbjct: 259 VTDRGQ 264


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
          Length = 1058

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 101/488 (20%), Positives = 190/488 (38%), Gaps = 62/488 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                 + ++ +T + + D +    + ++    + R+IP + DGLKP  R+ILF  ++  +
Sbjct: 613  FEPGNQLDQKLTKIPVEDFINKDLILFSRY-DVERSIPSVVDGLKPSQRKILFSALKRNL 671

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
                K  + A  + E  G +H  G A++  A+  MAQD+  S  + L+  +G FGS    
Sbjct: 672  VQEIKVAQFAGYTSENAGYHH--GEASLQGAIVGMAQDYVGSNNINLLLPRGQFGSRLHG 729

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L      +     +  +++  + DG   EP       P +LVNG  G
Sbjct: 730  GKDSASARYIFTQLSPNTRDIFHKADERLLNYLED-DGDRIEPEYYVPTIPFLLVNGSSG 788

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +TNIP +N  ++VD    +I+N  +              P      G  G     
Sbjct: 789  IGTGFSTNIPAYNPKDIVDNVKRLINNETM-------------LPMTPWYRGFKGDIK-- 833

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             T  G     GV  I       + + V+E+P         E +  L+ +K    +AD R+
Sbjct: 834  ETSPGVFTCSGVYDI-----KGKTVTVSELPVGTWTNDYKEHLETLIEKK---IVADFRE 885

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
                      I+       +++     +  S     +++    +G   +  + + I+  +
Sbjct: 886  RHTELNVHFEIDFVGTLDPNIL-----KLESTIRTTNMHAFDPSGKIKKYDSPLEIIADW 940

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R+E  V+R + LL   + R  V    +  + ++++   +I               R 
Sbjct: 941  FTTRKEFYVKRKEDLLKDLKARVLVAQNKSRFITSVNDGTLVI--------------TRR 986

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 IKDL  L              Y  +     +L ++++ LT    + ++ E  +L 
Sbjct: 987  AEEDVIKDLGKL------------KFYKVDKSFDYLLGMKISSLTKERAEKLQAEAAALE 1034

Query: 482  IEIKECLD 489
             E+    +
Sbjct: 1035 KELVILEN 1042


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella virus
            MT325]
          Length = 1058

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 186/498 (37%), Gaps = 64/498 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                 + ++  T++ + D +    + ++    + R+IP + DGLKP  R+ILF   +  +
Sbjct: 613  FQPGNQLDQSKTNIPVPDFIDKELILFSRY-DVERSIPSVVDGLKPSQRKILFAAFKRNL 671

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
                K  + +    E  G +H  G  ++  A+  MAQD+  S  + L+   G FGS    
Sbjct: 672  TNEMKVAQFSGYVAEHSGYHH--GEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRILG 729

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L      + +      + +  + DGS  EP       P +LVNG  G
Sbjct: 730  GKDCASARYIFTKLSPVTRQVFNQADDVLLKYLED-DGSSIEPEWYVPAIPFLLVNGANG 788

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP++N  ++++    +I   ++              P        TG  +  
Sbjct: 789  IGTGFSTDIPSYNPKDIINNVKRLISGKEM-------------VPMTPWYKEFTG--SIV 833

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                G+   +GV+ +       + +VV+E+P     +   +   E + EK++  I D R+
Sbjct: 834  QNDNGTFTCKGVAKV-----SGKSVVVSELPIGTWTSDY-KDFLEGLVEKKV--IVDFRE 885

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            +   +     I+        ++     +        +++     G   +    + I+  +
Sbjct: 886  KHTEKNVLFEIDFPGEPDLSIL-----KLEKAIRTTNMHAFDPEGKIKKYADPLDIILDW 940

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R+    +R  YLL     +A +       +  +     ++           EL    
Sbjct: 941  FEVRKTFYTKRKNYLLKDLSHKAAIAENKHRFITLIVND-ELVLSKKTESVILSEL---- 995

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      Y SE   + +L++ ++ LT    + +R E   L 
Sbjct: 996  ---------------------RTLKFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLK 1034

Query: 482  IEIKECLDILSSRSRLLG 499
             E+    +  +SR+++  
Sbjct: 1035 KELSILEN--TSRTQMWN 1050


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 193/539 (35%), Gaps = 64/539 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   K   
Sbjct: 711  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---KNEC 766

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 767  KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 826

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L      + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 827  ARYIFTKLASCTRSIFNEYDDPILKYL-NEEGQKIEPKYYIPVIPTILVNGCEGIGTGYS 885

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  ++++     I+      + L+ +I                    Y   +G 
Sbjct: 886  SFIPNYNYKDIIENIKRYINK-----EPLIPMIP------------------WYKDFKGR 922

Query: 248  IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I   G +  E        D E + + E+P +       E + EL+ +++   I D  D S
Sbjct: 923  IESNGKTGFETIGIIRKIDDETLEINELPIKKWTQDYKEFLEELLTDEKNQLILDYIDNS 982

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKA 360
              +     I++            L +   L+S  +   + L  Y     +  T + ILK 
Sbjct: 983  SHEEICFTIKMDPAKLRKAEEEGLEKVFKLKSTLTTTNMTLFDYNLKLQKYATELDILKE 1042

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R      R  YL+ K      ++   +  +  +     ++              + 
Sbjct: 1043 FCFQRLNAYENRKSYLIAKLEKEKKIISNKSKFILAIVNNELVVNKKKKKVLVEELYRKG 1102

Query: 421  SWNASDI----------KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                 DI          ++L++  D+       +    +S      +L + +  LT    
Sbjct: 1103 YDPYKDINKIKKEEIFEQELLEAADNPE--DNEEIIAGISVKDYDYLLSMPIFSLTLEKV 1160

Query: 471  DDIRNELNSLGIEIKECLDI------LSSRSRLLGIIKQE------LLSVKDELDTPRR 517
            +++  +      E++   +I      L    ++   I+ +           ++    R+
Sbjct: 1161 EELIAQHKEKEKELEILRNITVETMWLKDIEKVEEAIEFQRNVELANREESNKFKVARK 1219


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 92/421 (21%), Positives = 172/421 (40%), Gaps = 34/421 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     ++ TD +    + +++     R+IP + DGLKP  R++L+ M +  V  + K V
Sbjct: 646  DHSTDQITYTDFINKELILFSM-ADNIRSIPSVVDGLKPGQRKVLYTMFKRNVRKDIKVV 704

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A     +    + HG+ +++  +  +AQ +  S  +  +E  GNFGS    G   A+ 
Sbjct: 705  ELAGYVSGMTA--YQHGDNSLHATIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASA 762

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL   A  L     +  +    + DG   EP       P VL+NG  GI  G +T
Sbjct: 763  RYIYTRLSPFARRLFHQADEPLLVNNID-DGKVIEPETYVPVVPLVLINGADGIGTGWST 821

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP +N  EVVD    ++       D L         P      G  G      TG G  
Sbjct: 822  SIPNYNPEEVVDNLKRLMAG-----DEL--------VPMKPWFRGFKG----EVTGSGD- 863

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQG 307
              R             ++ +TE+P +       +K+ ++++ +++   I D RD +    
Sbjct: 864  --RYKFSGIIKQTGDNEVEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYRDYNTHTN 921

Query: 308  YRVVIELKRGAS----ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
               +I+     +     +  L + ++     +  ++      G      T   IL+AF A
Sbjct: 922  VHFIIQSGVKNTVKKAVEDGLEERFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYA 981

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R ++LL++ + +   L   A  V  + +   +I          +EL ++++ 
Sbjct: 982  VRIKLYEKRKQHLLSQLQSQLEKLTNQARFVQMIIDGKLVI-SKKKKAVLIQELQEKAFK 1040

Query: 424  A 424
             
Sbjct: 1041 P 1041


>gi|295394156|gb|ADG03689.1| DNA gyrase subunit A [Streptococcus cristatus]
          Length = 175

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 105/175 (60%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVD+  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP+     +ME+
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPEATTRDIMEV 175


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score =  204 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 102/520 (19%), Positives = 199/520 (38%), Gaps = 57/520 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +   D +    + +++     R+IP + DGLKP  R++ + M         K  
Sbjct: 762  DHNTDRIPYADFINKELILFSM-ADNLRSIPSVVDGLKPGQRKVFYVMFDRKSNAELKVN 820

Query: 73   KCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
                + G VMG+  + HG+AA+   +  +AQ++  S  + L+E +G FG+    G   A+
Sbjct: 821  T---LVGHVMGQAAYHHGDAALVMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAAS 877

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L K    L        +D+  +  G   EP       P VL+NG  GI  G +
Sbjct: 878  GRYIFTALPKITRALFPQADDALLDYLDDD-GQKVEPHWYIPVVPQVLMNGAEGIGTGWS 936

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T++P +N  E+V          DI              P      G TG    ++ GR  
Sbjct: 937  TSVPNYNPHEIVANLRRRTAGEDI-------------IPMKPWFRGFTGDVEEFSPGRFK 983

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDR 305
            +  R       T  D +   +TE+P +   +   E + E +   EK    I D ++    
Sbjct: 984  VSGR------VTQIDEKTWEITELPIRTWTSNYKESLEERIVSSEKAQATIKDYKEYHTE 1037

Query: 306  QGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
                 ++EL     A++     +  ++ +   S  ++ +   +G   +  +   IL+ F 
Sbjct: 1038 STVNFIVELTAKGQAEIAEKGADAFFKLSCQISTTNMVLFDQDGKIKKYSSPEEILEEFY 1097

Query: 363  AFREEVVVRRTKYLLNKARD------------RAHVLVGLAIAVANLDEVVRIIR---FS 407
              R     +R ++L+++ +             +  +   L ++     ++V  +R   F 
Sbjct: 1098 LLRLSYYQKRKEHLVDQLKLMYDKLSNQARFVQMIINRQLVVSNRKRADIVADLRKNDFR 1157

Query: 408  PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
            P P+  +  +     +   I +     D     + +     L++ +   +L+ R  +   
Sbjct: 1158 PFPKQGKASIAAEPEDDEPIDEEDISADSDFDYLLNMAIYNLTKEKVEKLLKERDVKEEE 1217

Query: 468  LGR------DDIRNELNSLGIEIKECLDILSSRSRLLGII 501
            L         ++ +E   LG  I+   ++L+   R L  +
Sbjct: 1218 LKVLIGRSPQNLWDE--DLGKFIELWEEVLAEDERRLKDV 1255


>gi|328947272|ref|YP_004364609.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
 gi|328447596|gb|AEB13312.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
          Length = 659

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 213/494 (43%), Gaps = 54/494 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +    +++ YA  VI  RAIPDL DGLKPV RRI   M  +    + +  K A + G+
Sbjct: 4   IKNLFDKNFIEYASYVIRDRAIPDLEDGLKPVQRRI---MHTLFNIDDGRMHKVASVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M K+HPHG+A+I  AL  +    + + + I+ QGNFG++  GD  +A RY EC +   A
Sbjct: 61  CM-KFHPHGDASIGAALVVL----ANKEIFIQRQGNFGNLYTGDTASASRYIECCVHPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     +  ++ P+YDG  +EPV   A+ P VL+ G  GIAVGM+T I  +N+ EV+
Sbjct: 116 KKFL--YNPNITEYVPSYDGRSKEPVAFRAKIPVVLLGGAEGIAVGMSTKILPYNIKEVL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +     ++         PD PTG ++       + Y  G G I+ R        
Sbjct: 174 DAEIKALRGEPFEI--------YPDSPTGGLM-----DVSNYNDGNGKIITRAK----FD 216

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D ++IV+TE+P +     +L+ I    +  +I   +   ++       + I+L RG  
Sbjct: 217 LSDEKKIVITELPLETTSKDLLDSIDAAYKAGKIKISS--VEDFTTDHCNIEIKLPRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +  +   LY YTS +   +  M+ +    P   T   I+K +      ++    ++    
Sbjct: 275 SKDVEKALYAYTSCEKSIACQMLVIKDNMPVAMTATEIIKYYAKKLTGIIKDELEFERGS 334

Query: 380 ARDRAHVLVGLAI-AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
             +  H      I     + + +  ++ + +   A +                    D  
Sbjct: 335 LTEELHQRTLERIFIEERIYKSIEQMKTAESVNKAVK--------------------DGF 374

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                +    +++     +L++ + R++    +  R+++ ++        +I      L 
Sbjct: 375 VPFKDELIRDVTDEDVEKLLKIPIRRISLFDINKNRDQVKAINER---LKEIARRLKHLT 431

Query: 499 GIIKQELLSVKDEL 512
               + L  + DEL
Sbjct: 432 DCAVEYLDGILDEL 445


>gi|295394158|gb|ADG03690.1| DNA gyrase subunit A [Streptococcus gordonii]
          Length = 175

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 104/175 (59%), Positives = 136/175 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFIDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNL E +D    V+DNP+     +ME+
Sbjct: 121 IVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKLVMDNPEATTRDIMEV 175


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1398

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 196/540 (36%), Gaps = 65/540 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   +   
Sbjct: 711  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNEC 766

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A++ G +     YH HG +++   +  MAQ +  S  +  +E  G FGS    G   +
Sbjct: 767  KVAQLVGYIAEHSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDAS 826

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            A RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G 
Sbjct: 827  AARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGY 885

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            ++ IP +N  +++D     I+      + L+ ++                    Y   +G
Sbjct: 886  SSFIPNYNYKDIIDNIKRYINK-----EPLIPMVP------------------WYKDFKG 922

Query: 247  SIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
             I   G +  E        D + + +TE+P +       E + EL+ +++   I D  D 
Sbjct: 923  RIESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDN 982

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILK 359
            S  +     I++            L +   L+S  +   + L           T + ILK
Sbjct: 983  SSHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILK 1042

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             F   R +    R  YL++K      ++      +  +     I+              +
Sbjct: 1043 EFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRK 1102

Query: 420  RSWNASDI----------KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                  DI          ++L+D  D+       +    ++      +L + +  LT   
Sbjct: 1103 GYDPYKDINKIKKEEIFEQELLDAADNPE--DNEEIIAGITVKDYDYLLSMPIFSLTLEK 1160

Query: 470  RDDIRNELNSLGIEIKECLDI------LSSRSRLLGIIKQE------LLSVKDELDTPRR 517
             +D+  +L     E++   +I      L    ++   I+ +           ++    R+
Sbjct: 1161 VEDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAIEFQRNVELSNREESNKFKVARK 1220


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/462 (22%), Positives = 179/462 (38%), Gaps = 38/462 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   +S +D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 659  LPERYLYTKGTKHISYSDFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 716

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+   
Sbjct: 717  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLT 774

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    ++++   DG   EP+      P VLVNG  
Sbjct: 775  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAE 833

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E+      +I+  +            P  P      GR    + 
Sbjct: 834  GIGTGWSTKIANYNPREITRNLRRMINEEE----------PLPMHPWYKNFTGRMEYIS- 882

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
                 G  V  G  +I+   G+R  + +TE+P  V      E + E +     K    ++
Sbjct: 883  ----DGRYVHTG--NIQILPGER--VEITELPIGVWTQNYKENVLEALSNGTEKVKAIVS 934

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R VI    G      S D    ++++ +S  S+  ++    N       
Sbjct: 935  EYREYHTDTTVRFVISFAPGEFRRIQSEDGGFYRVFKLSSTLSINQMHAFDQNNCLRRYA 994

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   +LK F   R E   RR +YL+ +    A  L   A  +    E   ++      + 
Sbjct: 995  SSTDVLKEFYQLRVEYYGRRKEYLVGQLTALADRLSDQARFILEKCEKTLVVENKQ-RKA 1053

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
               EL +R +    +K+    I        ++        Q 
Sbjct: 1054 MCDELTKRGYRPDPVKEWQRRIKMEDAEPENEEEEDEEGEQA 1095


>gi|295394178|gb|ADG03700.1| DNA gyrase subunit A [Streptococcus sanguinis SK1]
          Length = 175

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 136/175 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV   K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPEKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVD+  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           VVL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD     +ME+
Sbjct: 121 VVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDATTRDIMEV 175


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 103/465 (22%), Positives = 180/465 (38%), Gaps = 38/465 (8%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  +       KG   +S +D +    + ++ N    R+IP L DGLKP  R+++F   +
Sbjct: 656  EMGLPERYLYTKGTKHISYSDFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFK 714

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+
Sbjct: 715  RN---DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGT 771

Query: 120  V--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY    +      +   L    ++++   DG   EP+      P VLVN
Sbjct: 772  RLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVN 830

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +T I  +N  E+      +I+  +            P  P      GR   
Sbjct: 831  GAEGIGTGWSTKIANYNPREITRNLRRMINEEE----------PLPMHPWYKNFTGRMEY 880

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIV 294
             +      G  V  G  +I+   G+R  + +TE+P  V      E + E +     K   
Sbjct: 881  IS-----DGRYVHTG--NIQILPGER--VEITELPIGVWTQNYKENVLEALSNGTEKVKA 931

Query: 295  DIADLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
             +++ R+       R VI    G      S D    ++++ +S  S+  ++    N    
Sbjct: 932  IVSEYREYHTDTTVRFVISFAPGEFRRIQSEDGGFYRVFKLSSTLSINQMHAFDQNNCLR 991

Query: 350  ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
               +   +LK F   R E   RR +YL+ +    A  L   A  +    E   ++     
Sbjct: 992  RYASSTDVLKEFYQLRVEYYGRRKEYLVGQLTALADRLSDQARFILEKCEKTLVVENKQ- 1050

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
             +    EL +R +    +K+    I        ++        Q 
Sbjct: 1051 RKAMCDELTKRGYRPDPVKEWQRRIKMEDAEPENEEEEDEEGEQA 1095


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/529 (20%), Positives = 192/529 (36%), Gaps = 46/529 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +      EK    VS  D +    + ++ N+   R+IP L DG KP  R++LF  ++   
Sbjct: 695  LPELYLYEKDTKRVSYRDFVNKELVLFS-NMDNERSIPSLMDGFKPGQRKVLFTCIKRN- 752

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV 120
              +KK +K A+++G V     + HG A++   +  +AQD+    ++ LLL  GQ      
Sbjct: 753  --DKKEIKVAQLAGSVAEHSAYHHGEASLMGTIIGLAQDFVGSNNINLLLPNGQFGTRLQ 810

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    + K    +        +  + + D    EP       P +LVNG  
Sbjct: 811  GGKDAASPRYIFTLMSKLTRIIFHPHDDPLLKHQMD-DNQRIEPEYYAPIIPMILVNGTD 869

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G  T I  +N  EVV     ++D  +            P  P      G     + 
Sbjct: 870  GIGTGWMTKILNYNPREVVANVKRMLDGEE----------PIPMDPWFKGYRGTIERID- 918

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
                      R     E       ++ +TE+P +V      E + E +    EK    I 
Sbjct: 919  --------RHRYAISGELAVLSGTEMEITELPLRVWTQNYKESVMETLLHGSEKIPPLIT 970

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTL 354
            D ++       R ++ +            L++   LQ+  S+  + L   NG      T+
Sbjct: 971  DYKEYHTDTTVRFIVTMSEEKMQQAEAEGLHKAFKLQTTHSLTSMVLYDSNGCLKMYDTV 1030

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              ILK F   R     +R  YL    +  +  L   A  +    + V I+      +   
Sbjct: 1031 EDILKEFFTVRLGYYGKRKDYLSGVLQAESQRLSNQARFICEKCDNVLIVENKK-AKVLV 1089

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLARLT 466
             EL +R+++   ++       ++      +     +E +           +L++ +  LT
Sbjct: 1090 EELRRRNYDPDPVRIWKKNQKNNVNAENEEEEEANAENEEGAVKIGDYDYLLDMPMRSLT 1149

Query: 467  GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
               ++++  + +    E    L    S + L        + V  E++  
Sbjct: 1150 YEKKEELLKKRDVKMKEYDILLK--KSPADLWREDLDHFMVVLKEVEDA 1196


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 174/493 (35%), Gaps = 48/493 (9%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              V   D +    + ++    L R+IP + DG KP  R++LF   +  ++ + K  + + 
Sbjct: 702  DDVRYDDFINKELILFSR-ADLMRSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSG 760

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G A++   +  +AQD+  S  + L+   G FG+    G   A+ RY  
Sbjct: 761  YVSEHSAYHH--GEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIF 818

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL      +  +     +D+    DG   EP       P VLVNG  GI  G +T+IP 
Sbjct: 819  TRLAPICRVIFPECDDALLDYLDE-DGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIPN 877

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
             N  ++V     ++D+   +                       G        +G I    
Sbjct: 878  FNPRDIVANIRRILDDECTER-------------MHPWYRNFKGTIEE-EIVKGEIRYNI 923

Query: 253  VSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                E    D   +V+TE+P   +  +    LE +     +     I D ++        
Sbjct: 924  TGKYEIV--DETTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPFITDYKEHHTDTTVH 981

Query: 310  VVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             ++ +     A      + + ++  +  S  +++     G   +  +   I++AFV  R 
Sbjct: 982  FIVTMTPENMAKAQKDGIEKKFKLCAKVSTSNMHAFDEKGGITKYSSPEAIMEAFVPLRL 1041

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   RR   L+ +A         L      +  ++ ++         ++ ++     A+ 
Sbjct: 1042 DAYARRRAMLIRQAEFE------LKRMSNKVRFILAVVDGEMTIGRKKKSVLIEELEAAG 1095

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTR------------AILELRLARLTGLGRDDIR 474
               +      ++          LS++                +L + L  LT    D++ 
Sbjct: 1096 YDKMPKTAKAAAAADAEPAESGLSDISEEGAPAPADGASYDYLLSMPLWNLTQEKVDELV 1155

Query: 475  NELNSLGIEIKEC 487
             E      E++E 
Sbjct: 1156 EEQRVKTAEVEEL 1168


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/543 (20%), Positives = 196/543 (36%), Gaps = 50/543 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++    +  +D +    + +++   L R+IP + DGLKP  R+ILF   +   
Sbjct: 630  FEPGVHLDQKEKLIKYSDFVHKELIQFSM-ADLQRSIPSMVDGLKPGQRKILFSSFKRNF 688

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
                K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG+    
Sbjct: 689  VKEAKVAQFSGYVSEHSAYHH--GEQSLASTIIGMAQDFVGSNNINLLQPNGQFGTRNLG 746

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   RL     FL        +D+  N DG   EP       P VLVNG  G
Sbjct: 747  GKDHASARYIYTRLSPITRFLFSKDDDRLLDYL-NEDGQSIEPTWYVPIIPTVLVNGSEG 805

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G ++ IP +N  ++V     ++D   +              P      G TG     
Sbjct: 806  IGTGWSSYIPNYNPRDIVANVRRLLDGDAM-------------VPMDPWYRGFTGTIEK- 851

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIAD 298
                  +       IE+ S     + ++E+P   +  +    LE I+E   + +   I  
Sbjct: 852  TVKESGVSYTACGIIEEVSE--TSLRISELPIRRWTQDYKEFLESISEGNDKAKDPFIEG 909

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLI 355
                SD     +++ L+           L +   L +  S + + L   K    +  T  
Sbjct: 910  FTQHSDHSTVDIIVHLREEKLMAAKQEGLLKKFKLTTSISTSNMHLFDRKGVIKKYDTPE 969

Query: 356  GILKAFVAFREEVVVRRTK-----------YLLNKARDRAHVLVGLAIAVAN----LDEV 400
             IL+ F   R E   +R K            L NK R    V+ G  I        L   
Sbjct: 970  QILEDFFHLRLEFYEKRKKVLLEDLELELLKLENKVRFILGVVNGEIIVSNRKRADLFLE 1029

Query: 401  VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            ++   F+P P+  +    + +    + +D  +  + +                + AI  L
Sbjct: 1030 LQQKGFTPFPKKTKALEPEVAGATENTEDAEENSEAAIEKGARISDYEYLI--SMAIGTL 1087

Query: 461  RLARLTGL--GRDDIRNELNSLGIEIKECLDILSSRSRLLG-IIKQELLSVKDELDTPRR 517
             + R+  L   RD    E++ L       L +    +  +   + ++  ++ +E     R
Sbjct: 1088 TIERVQALLADRDKANAEVDELRKSTPRSLWLKDLDALEMELDVLEKSEALAEEAKKKAR 1147

Query: 518  TRI 520
            T++
Sbjct: 1148 TQV 1150


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 187/482 (38%), Gaps = 39/482 (8%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            H +  +    K    ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 676  HGLPEEYLYGKSTKYLTFNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKR 734

Query: 64   GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
                +K+ VK A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+ 
Sbjct: 735  N---DKREVKVAQLAGSVAEMSAYHHGEISLMMTIINLAQNFVGSNNVNLLQPIGQFGTR 791

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY    L   A  L   L  + + F  + D    EP       P VLVNG
Sbjct: 792  LHGGKDAASPRYIFTMLSPLARLLFPALDDNVLKFMYD-DNQKVEPEWYIPIIPMVLVNG 850

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +  +P ++  E+V+    ++D                D P   +   +    
Sbjct: 851  AEGIGTGWSCKLPNYDTREIVNNIRRMLDG---------------DEPQQMLPSYKNFKG 895

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                 G    ++ G    E +  D   I ++E+P +       E++ E +    EK    
Sbjct: 896  VIQELGPNQFILNG----EVSVLDSTTIEISELPARTWTQNYKEQVLEPMLNGTEKTPPL 951

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERF 352
            I D ++       R ++++     A+     L++   LQ+  + N + L  +     +  
Sbjct: 952  ITDYKEYHTDTTVRFLVKMTEQKLAEAEAAGLHKVFKLQASLTCNSMVLFDHVGCLRKYE 1011

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T++ IL+ F   R +    R  +L+      A  L   A  +    E   +I   P  + 
Sbjct: 1012 TVLDILREFFDLRVKYYSLRKDWLVGMLTAEASKLSNQARFILEKIEGKIVIENKP-KKE 1070

Query: 413  ARRELMQRSWNASDI---KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
              + L+QR +++  +   K   +  +        +     +      +L + L  LT   
Sbjct: 1071 LIQMLVQRGYDSDPVKTWKQTQEKEEAGELIEEEEAEANATGPDFNYLLSMPLWYLTKKK 1130

Query: 470  RD 471
            + 
Sbjct: 1131 KK 1132


>gi|190888748|gb|ACE95999.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 118/158 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|124365597|gb|ABN09827.1| gyrase subunit A [Clostridium difficile]
 gi|124365599|gb|ABN09828.1| gyrase subunit A [Clostridium difficile]
          Length = 154

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 122/154 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHP
Sbjct: 1   SYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ 
Sbjct: 61  HGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           K+TVDF+PN+D S +EP VL ARYPN+LVNG  G
Sbjct: 121 KETVDFKPNFDESLKEPSVLPARYPNLLVNGSNG 154


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 199/572 (34%), Gaps = 86/572 (15%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFK 701

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 702  RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 759

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL + +  +        V+++ + DG   EP       P VLVNG
Sbjct: 760  LHGGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNG 818

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +T+IP +N  E++     ++   ++                     G TG  
Sbjct: 819  TTGIGTGFSTSIPNYNPLEIISNLERLMRGEEV-------------HKMQPWYFGFTGTM 865

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                   G  V  G   I         + +TE+P  V   A  +K  E +REK +  +  
Sbjct: 866  E--EKEPGKFVSHGRYEIRPDG----VVCITELPIGVWTQAY-KKFLEDMREKEL--VVQ 916

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +   +   R    + + + N++A N  G   +    
Sbjct: 917  YREHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDA 976

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              +LK F   R +   +R +YLL + R     L  +   V  + E   ++          
Sbjct: 977  ESVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLE 1036

Query: 408  --------PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS---------------- 443
                    P P   +++L   +    D +   D  +     +G                 
Sbjct: 1037 DLQRRMYLPFPPYTKKKLSSTTVEEGDGEGAPDAQNSEEDVLGMGNAADGGADDGAAEPP 1096

Query: 444  ------DGTMYLSEVQTRAILELRLAR----LTGLGRDDIRNE--------LNSLGIEIK 485
                      YL  ++  ++    +AR    +    RD    E        +  L +   
Sbjct: 1097 EVRRATRDYDYLLGMKLWSLTAEMIARLEAQMDRARRDTATMEARTPKDMWMEDLKVLRT 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +     + R   +  I  +   VK      RR
Sbjct: 1157 KLESFYADREVEIATI--QRKKVKKPF-DARR 1185


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 199/572 (34%), Gaps = 86/572 (15%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +E  +  +  VS  D +    + ++I     R+IP + DG KP  R+ILF   +
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFSI-ADCERSIPSVIDGFKPGQRKILFSCFK 701

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 702  RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 759

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL + +  +        V+++ + DG   EP       P VLVNG
Sbjct: 760  LHGGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMVLVNG 818

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +T+IP +N  E++     ++   ++                     G TG  
Sbjct: 819  TTGIGTGFSTSIPNYNPLEIISNLERLMRGEEV-------------HKMQPWYFGFTGTM 865

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                   G  V  G   I         + +TE+P  V   A  +K  E +REK +  +  
Sbjct: 866  E--EKEPGKFVSHGRYEIRPDG----VVCITELPIGVWTQAY-KKFLEDMREKEL--VVQ 916

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +   +   R    + + + N++A N  G   +    
Sbjct: 917  YREHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITKYSDA 976

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              +LK F   R +   +R +YLL + R     L  +   V  + E   ++          
Sbjct: 977  ESVLKEFYLVRLDYYAKRKQYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLE 1036

Query: 408  --------PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS---------------- 443
                    P P   +++L   +    D +   D  +     +G                 
Sbjct: 1037 DLQRRMYLPFPPYTKKKLSSTTVEEGDGEGAPDAQNSEEDVLGMGNAADGGADDGAAEPP 1096

Query: 444  ------DGTMYLSEVQTRAILELRLAR----LTGLGRDDIRNE--------LNSLGIEIK 485
                      YL  ++  ++    +AR    +    RD    E        +  L +   
Sbjct: 1097 EVRRATRDYDYLLGMKLWSLTAEMIARLEAQMDRARRDTATMEARTPKDMWMEDLKVLRT 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +     + R   +  I  +   VK      RR
Sbjct: 1157 KLESFYADREVEIATI--QRKKVKKPF-DARR 1185


>gi|257362151|gb|ACV53176.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/188 (50%), Positives = 134/188 (71%), Gaps = 1/188 (0%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPH ++A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHCDSACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
            +S R  LI+GQGN+G+ D     AA RYTE +L K A  LL +LG+ TVD++PN+DGS 
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM +++
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 222 GPDFPTGA 229
           GPD+PT A
Sbjct: 181 GPDYPTEA 188


>gi|215480315|gb|ACJ67502.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 233

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/256 (42%), Positives = 157/256 (61%), Gaps = 26/256 (10%)

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            P QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ 
Sbjct: 1   FPSQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 60

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL
Sbjct: 61  TALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGL 120

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            +A+ +LD V+ +IR S   E AR  L+++                            L+
Sbjct: 121 RVALDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLT 154

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+
Sbjct: 155 EKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKE 214

Query: 511 ELDTPRRTRIVEGLLD 526
             +  RRT IV   L+
Sbjct: 215 RFNDERRTEIVTSGLE 230


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/515 (17%), Positives = 185/515 (35%), Gaps = 37/515 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I S+ I+D +    + +++     R+IP + DGLKP  R++LFG  +  +    K  
Sbjct: 758  DHDIQSLPISDFVNKELILFSM-ADNIRSIPSVADGLKPGQRKVLFGCFKRNLTKEIKVA 816

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G A++   +  +AQ++  S  + L++  G FG+    G   A+ 
Sbjct: 817  QLAGYVSEKTAYHH--GEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLAGGKDAASA 874

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L +    +        +++    DG   EP       P VL+NG  GI  G +T
Sbjct: 875  RYIFTNLPRMTRAIFHPADDGLLNYLIE-DGMSIEPDYFMPTVPMVLINGADGIGTGWST 933

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP +N  ++V+    ++   + +                    G  G        +  +
Sbjct: 934  AIPNYNPVDIVENLRRMMRGEEPEE-------------MTPWFRGFKGSIERIDQDKYKV 980

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
                   IE    +   + +TE+P +       E + E+    +K    I D  +     
Sbjct: 981  SG----KIE--KINDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIKDYEEHHTDT 1034

Query: 307  GYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                 + +     AD         ++ T+     ++    LNG   +  +   IL+ F  
Sbjct: 1035 TVHFRVHMTEKNLADAEKEGFDKRFKLTTSLGTGNMVCFDLNGKIKKYASPEEILEEFFH 1094

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R E    R ++L ++   +   L   A  V  +     ++     P+        +   
Sbjct: 1095 KRLEFYGHRKQHLADELNRQFERLSNQARFVHMIITKELVVSGKRRPDIVAELRSLKFRP 1154

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                +   +   + +           S+     +L + +  LT    + +  E ++   E
Sbjct: 1155 FPKKERAKEEGGNEAAEEEEGDEGQASDY--DYLLGMAIWSLTSEKVEKLLTERDAKEQE 1212

Query: 484  IKECLDILSS---RSRLLGIIKQELLSVKDELDTP 515
            + E L +  +      L   + +  L+++ ++   
Sbjct: 1213 LIELLKLSPNDIWDQDLDNFLAEWQLALEADIADA 1247


>gi|190888734|gb|ACE95992.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 119/158 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 110/530 (20%), Positives = 205/530 (38%), Gaps = 50/530 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG  S++  D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 545  LPERYLYTKGTKSITYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 602

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  +  + L+E +G FG+   
Sbjct: 603  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLS 660

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    +D++ + DG   EP+      P VLVNG  
Sbjct: 661  GGKDCASARYIFTIMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAE 719

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E++     +I+  +               P     LGR    + 
Sbjct: 720  GIGTGWSTKISNYNPREIMKNLRKMINGQE----------PSVMHPWYKNFLGRMEYVS- 768

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVD-IA 297
                 G  +  G  +I+  SG+R  + ++E+P  V      E + E +     ++   I+
Sbjct: 769  ----DGRYIQTG--NIQILSGNR--LEISELPVGVWTQNYKENVLEPLSNGTEKVKGIIS 820

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R VI    G      + +    ++++ T+  S   ++    N       
Sbjct: 821  EYREYHTDTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFP 880

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T I ILK +   R E   RR  +L+ +   +A  L   A  +       +++  +   + 
Sbjct: 881  TAIDILKEYYKLRREYYARRRDFLVGQLTAQADRLSDQARFILE-KCEKKLVVENKQRKA 939

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               EL++R +    +K+    I         +              E   A  +   +  
Sbjct: 940  MCDELLKRGYRPDPVKEWQRRIKMEDAEQADEED-----------EEEEEAAPSVSSKAK 988

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
               E++      K+  D+      L   +       K+EL   R T++ E
Sbjct: 989  KEKEVDP-EKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDTKLSE 1037


>gi|284154626|gb|ADB78414.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 106/186 (56%), Positives = 141/186 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ A  +GRGSI  R  + IE TS  +E+I VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRXAXESGRGSITXRAKAEIEXTSSGKERIXVT 180

Query: 270 EIPYQV 275
           E P  V
Sbjct: 181 EFPXXV 186


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
          Length = 1448

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 102/507 (20%), Positives = 193/507 (38%), Gaps = 46/507 (9%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  +      +K    VS  + +    + ++ N    R+IP + DGLKP  R++LF   +
Sbjct: 703  ETGLGERYLYQKDTKKVSYNEFINKELVLFS-NADNERSIPSMVDGLKPGQRKVLFTCFK 761

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                + KK +K A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+
Sbjct: 762  K---YEKKEIKVAQMAGAVSELSAYHHGEQSLMSTIINLAQNFVGSNNLNLLQPIGQFGT 818

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY   +L   A  +        + +  + D    EP       P VL+N
Sbjct: 819  RLHGGKDAASARYIFTQLSPLARLVFPHHDDPLLSYMYD-DNQRIEPEFYAPIIPMVLIN 877

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +T I  +++ EVV     ++   +            P  P+     G    
Sbjct: 878  GSEGIGTGWSTRICNYDIREVVANVRRLLAGDE----------PVPMLPSYKNFKGTIEE 927

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIV 294
                         R   + E +  D   + +TE+P +V      E + E +    +K   
Sbjct: 928  FEP---------NRFAVNGEISVVDDNSVEITELPIRVWTQNYKESVLENMVYGTDKVKP 978

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL----NGYKPE 350
             I+D ++       + V+++            L++   LQ+ FS   + +    +G    
Sbjct: 979  SISDYKEYHTDTTVKFVVKMNEDRLLRGEEEGLHKMFKLQTTFSQANLMVLYDRHGCIRR 1038

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPN 409
               +  IL+ F   R E+  +R  YL      + + +       +  +D  V I   S +
Sbjct: 1039 YDNVEEILREFFTLRMELYHKRKAYLEGILEAESSKLNNQARFIMEKIDGKVVIENKSKS 1098

Query: 410  PETARRELMQRSWNASDIKDL-------IDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
                  +L  R +++  +K         ++  +DS     SD +   S      +L + L
Sbjct: 1099 SMI--SQLTSRGYDSDPVKAWKEAQQKSVEEEEDSFDDAASDSSEAGSGPDYNYLLGMSL 1156

Query: 463  ARLTGLGRDDIRNELNSLGIEIKECLD 489
              LT   ++D+  + +    E+     
Sbjct: 1157 WSLTKEKKNDLLKQRDEKAAELSLLRR 1183


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 196/562 (34%), Gaps = 72/562 (12%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +VS ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KANTNINESMNYNVRNVSYSEFVHKELILFSV-ADCERSIPSVVDGLKPGQRKIMFSAFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K  + A    E    +H  G  ++   +  +AQD+  +  + L+  +GQ    
Sbjct: 706  RNLVRSLKVAQLAGYVSEHAAYHH--GEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A  +        V++R + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  +V+D    +     +  + L         P      G TG  
Sbjct: 823  TAGIGTGFATNIPNYSPLDVIDNLNRL-----LSGEELQ--------PMKPWYFGFTGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  +G  V  G + +         + +TE+P         + + +L        +  
Sbjct: 870  E--EREKGKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLRER---EIVIQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + +        +       R    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFIHPEVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKYLDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   RR ++LL + +  A  L  +   V  + +   I+    + +   
Sbjct: 981  ESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIV-TRRSMKDVL 1039

Query: 415  RELMQR---SWNASDIKDL-----IDLIDDSSYTIGSDGTMYLSEV----QT-------- 454
            ++L QR    +     K +     +D  D+               V    Q         
Sbjct: 1040 KDLKQRGYTPFPPQQKKKMSSTTIVDEEDNDGARKILPDVFEFESVPLCEQVIGKILCTA 1099

Query: 455  ---------------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                             +L LR+  LT       R +   +  +    L   +S   L  
Sbjct: 1100 EPEEINMWKGVLVEYDYLLSLRMVDLTVEMAMYFRTKREQMLNKHNFVLS--ASSKDLWR 1157

Query: 500  IIKQELLSVKDELDTPRRTRIV 521
                 L S  ++L   RR  I 
Sbjct: 1158 EDLDLLRSDIEKLFDERRREIA 1179


>gi|47419982|gb|AAT27343.1| DNA gyrase A [Campylobacter jejuni]
          Length = 261

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/286 (39%), Positives = 174/286 (60%), Gaps = 26/286 (9%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ 
Sbjct: 2   IRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKT 61

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +       
Sbjct: 62  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------- 114

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI   
Sbjct: 115 -------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARL 155

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY
Sbjct: 156 EEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGY 215

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           +KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +
Sbjct: 216 IKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 261



 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ++T++ +G+ KR  S  +    R GKG  A      +    + + F  N +D ++ 
Sbjct: 203 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDD---FIESFFTANTHDTLMF 259

Query: 856 VS 857
           V+
Sbjct: 260 VT 261


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 99/498 (19%), Positives = 195/498 (39%), Gaps = 48/498 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK    VS +D +    + Y+    + R+IP++ DG KP  R++LF  ++     +K+ V
Sbjct: 726  EKETRDVSFSDFVNVELVLYSNYDNV-RSIPNMMDGFKPGQRKVLFTCLKRN---DKREV 781

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 782  KVAQLAGSVAEHSAYHHGETSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSAS 841

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L   A ++        + +  + D    EPV      P VLVNG  GI  G  
Sbjct: 842  PRYIFTMLSPLARYIFHKHDDPLLKYEYD-DNQRIEPVYYVPVIPMVLVNGADGIGTGWM 900

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  E+++    +++  D               P         G+  +     G 
Sbjct: 901  TKIPNYNPREIIENLQRMMEGADPK-------------PMIPYYKNFKGVVESC----GD 943

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESD 304
                    I     D+  + +TE+P      A  E + E +    EK    I D ++ + 
Sbjct: 944  FRYVISGEISVIGPDK--VEITELPIGTWTQAYKETVLEPMLHGTEKTPAIITDYKEYNT 1001

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKAF 361
                  ++ + R    ++  + L++   LQ+  ++  +          +  +++ ILK F
Sbjct: 1002 DTAVHFIVMMNRDKLVELERDGLHKTFKLQTTMTITSMCAFDENQCLNKYESVVQILKGF 1061

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R +   +R  YL    +  A  L   A  +    +   +I      +    EL++R+
Sbjct: 1062 YKVRMDTYHKRKDYLEGILQAEAAKLSNQARFILEKCDSTLVIENKK-KKDMIAELVRRN 1120

Query: 422  WNASDIKD----------LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            + +  +            L + +++   +  +  TM         +L + +  LT   ++
Sbjct: 1121 YESDPVVSWKLSQNREQVLEEAVENDEESTPTTSTMEKENF--DYLLGMTMWSLTREKKE 1178

Query: 472  DIRNELNSLGIEIKECLD 489
            D+  + +    E+K    
Sbjct: 1179 DLLRQRDEKIAELKRLQA 1196


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 177/442 (40%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   +S  D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 660  LPERYLYTKGTKHISYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 717

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  +  + L+E +G FG+   
Sbjct: 718  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLT 775

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    +D++ + DG   EP       P VLVNG  
Sbjct: 776  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPQWYLPIIPMVLVNGAE 834

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  HN  E++     +I+  +               P      GR    + 
Sbjct: 835  GIGTGWSTKISNHNPREIMSNLRKMINGEE----------PKVMHPWYKNFTGRMEYVS- 883

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
                 G  V  G  +I+   G+R    +TE+P  V      E + E +    EK    I+
Sbjct: 884  ----DGRYVQTG--NIQILPGNR--AEITELPVGVWTQNYKENVLEPLANGTEKVKAIIS 935

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            D R+       R VI    G      + D    ++++ T+  S   ++    N       
Sbjct: 936  DYREYHTDTTVRFVISFAPGEFERIQAEDGGFYRVFKLTTTLSTNQMHAFDHNNCLRRFP 995

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T I ILK F   R E   RR  +L+ +   +A  L   A  +       +++  +   + 
Sbjct: 996  TAIDILKEFYELRREYYARRKDFLVGQLTAQADRLSDQARFIVE-KCDKKLVVENKQRKA 1054

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL++R +    +K+    I
Sbjct: 1055 MCDELLKRGYRPDPVKEWQRRI 1076


>gi|257362148|gb|ACV53175.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 1/188 (0%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG++A Y A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
            +S R  LI+GQGN+G+ D     AA RYTE +L K A  LL +LG+ TVD++PN+DGS 
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM +++
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 222 GPDFPTGA 229
           GPD+PT A
Sbjct: 181 GPDYPTEA 188


>gi|37999000|dbj|BAD00070.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999008|dbj|BAD00074.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999010|dbj|BAD00075.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999012|dbj|BAD00076.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999030|dbj|BAD00085.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|62084060|dbj|BAD91437.1| DNA topoisomerase subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 121/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A 
Sbjct: 61  VMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|3046558|gb|AAC13492.1| DNA gyrase subunit A [Cronobacter sakazakii]
          Length = 150

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/150 (59%), Positives = 120/150 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           DL K+TVDF  NYDG+ + P V+  + PN+
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNL 150


>gi|330685624|gb|EGG97268.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU121]
          Length = 415

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 147/308 (47%), Gaps = 11/308 (3%)

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                   +E Q  AI+ L+L RLT      +  E + L   IK+   IL     LL +I
Sbjct: 19  NLVAEFDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVI 78

Query: 502 KQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           K EL  ++ +  T R + I   + +  ++ E  +  E++V++++  GY+KR     + A 
Sbjct: 79  KNELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTTTRSFNAS 138

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
                G S V ++D D +     V+T  + L F++ G      V +L     +  G+ + 
Sbjct: 139 -----GVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVS 193

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKL 678
            I+S+++ E++  +  F E + S +  + + AT++G ++++ +  F     +   IAMK+
Sbjct: 194 QIVSIDEDEQVIDV--FNEKDFSQHEAFYIMATRNGMIKKSSVPQFKTTRYNKPLIAMKV 251

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
             +DE++++     +  I + T  G  + +  + +     R + GV+ I+L   D V+  
Sbjct: 252 KDQDEVINIMRVESDQLITVITHKGMSLTYSTNELSDTGLR-AAGVKSINLKDEDFVVMT 310

Query: 739 AIVLHADA 746
            ++ H+++
Sbjct: 311 QMINHSES 318



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 88/250 (35%), Gaps = 19/250 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET-----CTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +I +  K         EI  ++         E  +L  T+ G   R    +     
Sbjct: 80  NELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTTTRSF---- 135

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEIT 773
             N+ GV  + L  GD ++    V   D         R  ++              + ++
Sbjct: 136 --NASGVSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVS 193

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            + +    E  I     ++    E F +  +  G  K++S   F+ + R  K + A  V 
Sbjct: 194 QIVSIDEDEQVIDVFNEKDFSQHEAFYIMATRNGMIKKSSVPQFKTT-RYNKPLIAMKVK 252

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E   ++ +  V  +  I +++ KG  +    NE+        GV   +   ++ VV 
Sbjct: 253 DQDE---VINIMRVESDQLITVITHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFVVM 309

Query: 894 VERIRESEIV 903
            + I  SE V
Sbjct: 310 TQMINHSESV 319


>gi|50660404|gb|AAT80772.1| gyrase A [Brevundimonas diminuta ATCC 11568]
          Length = 156

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 100/156 (64%), Positives = 125/156 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KCAR+ G+V+G++HPHG+A++Y 
Sbjct: 1   VIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCARVVGDVLGRFHPHGDASVYM 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE ++  AA  LL D+ KDTVDF+P
Sbjct: 61  ALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKMAPAAVALLTDIDKDTVDFQP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYD    EPVVL AR PN+LVNG GGIAVGMATNIP
Sbjct: 121 NYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIP 156


>gi|3046556|gb|AAC13491.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 150

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 89/150 (59%), Positives = 120/150 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH L+ 
Sbjct: 61  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           DL K+TVDF  NYDG+ ++P V+  + PN+
Sbjct: 121 DLEKETVDFVDNYDGTEKKPDVMPTKIPNL 150


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
            parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 195/539 (36%), Gaps = 64/539 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   +   
Sbjct: 711  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNEC 766

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 767  KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 826

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 827  ARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYS 885

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  +++D     I+      + L+ ++                    Y   +G 
Sbjct: 886  SFIPNYNYKDIIDNIKRYINK-----EPLIPMVP------------------WYKDFKGR 922

Query: 248  IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I   G +  E        D + + +TE+P +       E + EL+ +++   I D  D S
Sbjct: 923  IESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNS 982

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKA 360
              +     I++            L +   L+S  +   + L           T + ILK 
Sbjct: 983  SHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKE 1042

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R +    R  YL++K      ++      +  +     I+              + 
Sbjct: 1043 FCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKG 1102

Query: 421  SWNASDI----------KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                 DI          ++L+D  D+       +    ++      +L + +  LT    
Sbjct: 1103 YDPYKDINKIKKEEIFEQELLDAADNPE--DNEEIIAGITVKDYDYLLSMPIFSLTLEKV 1160

Query: 471  DDIRNELNSLGIEIKECLDI------LSSRSRLLGIIKQE------LLSVKDELDTPRR 517
            +D+  +L     E++   +I      L    ++   I+ +           ++    R+
Sbjct: 1161 EDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAIEFQRNVELSNREESNKFKVARK 1219


>gi|47419980|gb|AAT27342.1| DNA gyrase A [Campylobacter jejuni]
          Length = 259

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 111/285 (38%), Positives = 171/285 (60%), Gaps = 26/285 (9%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RR
Sbjct: 1   ELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRR 60

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +            
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------------ 108

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL 
Sbjct: 109 --------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILK 154

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP
Sbjct: 155 SETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVP 214

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
              Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G 
Sbjct: 215 SKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQ 259



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ++T++ +G+ KR  S  +    R GKG  A      +    + + F  N +D ++ 
Sbjct: 197 NENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDD---FIESFFTANTHDTLMF 253

Query: 856 VSDKGT 861
           V+D+G 
Sbjct: 254 VTDRGQ 259


>gi|238810516|dbj|BAH70232.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810518|dbj|BAH70233.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810520|dbj|BAH70234.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|238810510|dbj|BAH70229.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810512|dbj|BAH70230.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810514|dbj|BAH70231.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|37999002|dbj|BAD00071.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999004|dbj|BAD00072.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999006|dbj|BAD00073.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 120/175 (68%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A 
Sbjct: 61  VMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 196/498 (39%), Gaps = 48/498 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+    + R+IP+L DGLKP  R++LF  ++     +K+ V
Sbjct: 685  EKDTRTVSFSDFINVELVLYSNYDNV-RSIPNLMDGLKPGQRKVLFTCLKRN---DKREV 740

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 741  KVAQLAGSVAEHSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAAS 800

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L   A ++        +      D    EPV      P VLVNG  GI  G  
Sbjct: 801  PRYIFTMLSPLARYIFHKHDDALLR-HEYDDNQKIEPVFYTPVIPMVLVNGADGIGTGWM 859

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  E+++    ++D  D            P  P      G       Y      
Sbjct: 860  TKIPNYNPREIIENLHRMMDGAD----------PKPMIPYYKNFKGSVESCGEY------ 903

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESD 304
               R V   E +    +++ +TE+P         E + E +    +K    I D ++ + 
Sbjct: 904  ---RYVISGEISVIGPDKVEITELPIGTWTQTYKETVLEPMLHGSDKTPAIITDYKEYNT 960

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKAF 361
                  ++ + R    ++  + L++   LQ+  S+  +          +   ++ ILK F
Sbjct: 961  DTAVHFIVIMNRDKLVELERDGLHKAFKLQTTTSITSMCAFDENQCLNKYDNVVQILKLF 1020

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R ++  +R  YL    +  A  L   A  +    +   ++      +    EL++R+
Sbjct: 1021 YKVRLDMYHKRKDYLEGILQAEAAKLSNQARFIIEKCDGTLVVENKK-KKDMITELIRRN 1079

Query: 422  WNASDIKD----------LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            +    +            L +++++   +  +  T  +       +L + +  LT   +D
Sbjct: 1080 YETDPVVAWKMSQNREQVLEEVVENDEES--APTTDVIERENFDYLLGMTMWSLTKEKKD 1137

Query: 472  DIRNELNSLGIEIKECLD 489
            D+  + +    E+K    
Sbjct: 1138 DLLRQRDEKIAELKRLQA 1155


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 189/487 (38%), Gaps = 33/487 (6%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  T+ +    + +++     R+IP + DG KP  R++LF   +  +    K  
Sbjct: 735  DYDVDEMGYTEFVNKELILFSM-ADNIRSIPSVMDGFKPSQRKVLFCCFKRNLRAELKVA 793

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A    E    +H  G A++   +  MAQD+  S  + L+   G FG+  + G   A+ 
Sbjct: 794  QLAGYVSEHSAYHH--GEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASA 851

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L++    +   L  D + +  + DG   EP       P VLVNG  GI  G ++
Sbjct: 852  RYIFTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWSS 910

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            ++P +N  +++ G   +I+  +I              P      G TG     A  RG+ 
Sbjct: 911  SVPNYNPLDIIKGLRQMINGEEIA-------------PLTPWYRGFTGHIVEKANSRGTD 957

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                +        D   +VV+E+P +       + +  L+       I D ++       
Sbjct: 958  TGNYIVQGLYEVTDDSTLVVSELPVKSWTQTYKQFLEGLLDAGT---IKDFKENHTDVKV 1014

Query: 309  RVVIELKRGASADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
               I ++  A +DV      + + ++  S  S  ++++    G+  +      I+  F  
Sbjct: 1015 LFTITMEPKALSDVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYG 1074

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R E   RR K +L K +D+  +L   A  V  + E   ++      +    ELM   ++
Sbjct: 1075 IRLEYYGRRKKAMLQKLQDQIKLLSNKARFVLAVVEGKLVVNNRK-KQELLEELMAEGYD 1133

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--RAILELRLARLTGLGRDDIRNELNSLG 481
               +       D+       D    +++V      +L +++  LT    D +R EL    
Sbjct: 1134 QI-VSKTKKKPDNEDSNESEDEEPNVADVSRGYDYLLSMKIWSLTKERVDKLRAELQERE 1192

Query: 482  IEIKECL 488
             E     
Sbjct: 1193 HEYSVLE 1199


>gi|257362154|gb|ACV53177.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 1/188 (0%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
            +S R  LI+GQGN+G+ D     AA RYTE +L K A  LL +LG+ TVD++PN+DGS 
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM +++
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 222 GPDFPTGA 229
           GPD+PT A
Sbjct: 181 GPDYPTEA 188


>gi|238810544|dbj|BAH70246.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810546|dbj|BAH70247.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810548|dbj|BAH70248.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810550|dbj|BAH70249.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 119/154 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 195/539 (36%), Gaps = 64/539 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   +   
Sbjct: 711  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNEC 766

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 767  KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 826

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 827  ARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYS 885

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  +++D     I+      + L+ ++                    Y   +G 
Sbjct: 886  SFIPNYNYKDIIDNIKRYINK-----EPLIPMVP------------------WYKDFKGR 922

Query: 248  IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I   G +  E        D + + +TE+P +       E + EL+ +++   I D  D S
Sbjct: 923  IESNGKTGYETIGIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNS 982

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKA 360
              +     I++            L +   L+S  +   + L           T + ILK 
Sbjct: 983  SHEDICFTIKMDPAKLQKAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKE 1042

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R +    R  YL++K      ++      +  +     I+              + 
Sbjct: 1043 FCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKG 1102

Query: 421  SWNASDI----------KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                 DI          ++L+D  D+       +    ++      +L + +  LT    
Sbjct: 1103 YDPYKDINKIKKEEIFEQELLDAADNPE--DNEEIIAGITVKDYDYLLSMPIFSLTLEKV 1160

Query: 471  DDIRNELNSLGIEIKECLDI------LSSRSRLLGIIKQE------LLSVKDELDTPRR 517
            +D+  +L     E++   +I      L    ++   I+ +           ++    R+
Sbjct: 1161 EDLLTQLKEKERELEILRNITVETMWLKDIEKVEEAIEFQRNVELSNREESNKFKVARK 1219


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 180/483 (37%), Gaps = 38/483 (7%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              +   + +    + ++    L R+IP + DG KP  R++LF   +  ++ + K  + + 
Sbjct: 674  EDIRYDEFINKELILFSR-ADLLRSIPSMVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSG 732

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G A++   +  +AQD+  S  + L+   G FG+    G   A+ RY  
Sbjct: 733  YVSEHSAYHH--GEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIF 790

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL +    +  +     +++    DG   EP       P VLVNG  GI  G +T+IP 
Sbjct: 791  TRLHEVCRAMFPECDDALLNYLDE-DGQRIEPDYYYPVLPLVLVNGAEGIGTGWSTSIPN 849

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
             N  +++     V++                  P      G   I      G     + G
Sbjct: 850  FNPRDLIANIRLVLEGES----------PVQMHPWYRHFKGS--ITEELVKGETRYNVTG 897

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR---IVDIADLRDESDRQGYR 309
              +I     D   + VTE+P +   +   E + E++  K       I D ++        
Sbjct: 898  SYNI----RDECTLEVTELPLRSWTSDYKEFLEEMLVPKTKTAKPFITDYKEYHTDSTVH 953

Query: 310  VVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             VI +     A      + + ++ ++  ++ ++++    G   +  + + IL+AFV  R 
Sbjct: 954  FVITMPPENLAAAQASGIEKKFKLSTKLNITNMHLFNEQGVITKYSSPVAILEAFVPLRL 1013

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE--TARRELMQRSWNA 424
            +   +R + L+  A  +   L      +  + +   ++      E       L       
Sbjct: 1014 KAYSQRREMLIRLAESQLKRLSNKMRFILAVVDGSLVVNRKKKQELIAELEALCYDRLPK 1073

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            +D   + +L +D  +        Y        +L + L  LT    D++  E  +   E+
Sbjct: 1074 TDKGSVAELDEDGEFIANDVAGSY------DYLLGMPLWNLTLEKVDELCAEKEAKEAEV 1127

Query: 485  KEC 487
             E 
Sbjct: 1128 AEL 1130


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 97/495 (19%), Positives = 182/495 (36%), Gaps = 32/495 (6%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +     +  I  +  ++ +    + ++      R+IP L DG KP  R++L+   +  + 
Sbjct: 706  TPGTHVDYNIADMPYSEFVNKELILFSR-ADNMRSIPCLVDGFKPSQRKVLYCCFKRNLR 764

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
               K  + A    E    +H  G A+++  +  MAQD+  S    L+   G FG+    G
Sbjct: 765  VEIKVAQLAGYVSEHSSYHH--GEASLHGTIINMAQDFIGSNNSNLLSPNGQFGTRILGG 822

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   +L+  A+   D      +++    DG   EP       P VLVNG  GI
Sbjct: 823  KDAASPRYIFTKLEAIAYKFFDPNDNSLLNYLDE-DGQLIEPEWYVPVIPMVLVNGSEGI 881

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G ++ IP +N  ++++   A I                P  P      G    ++   
Sbjct: 882  GTGWSSFIPNYNPLDLIENLRARIKGEAPTK---------PLVPWYRGFTGSIEERSGTR 932

Query: 243  TGRGS-IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     V+RG+ H+E    D   +V+TE+P +       + +  L+       I D ++
Sbjct: 933  DGDSQAFVVRGIFHVE----DDSTLVITELPVKTWTHTYKQFLESLMEN---DTIKDFKE 985

Query: 302  ESDRQGYRVVIELKRGASADVIL-----NQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
                      I +      +++L      + ++  S  S  ++++   +G   +  +   
Sbjct: 986  NHTDSKVLFTISMTPEKMQEIVLSPGGIMRKFKLESSISAANMHLFDADGRIQKYDSPHE 1045

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR- 415
            I+ AF   R     +R   +L K  D+  +L      +  + +   I+      E     
Sbjct: 1046 IISAFYDIRLAYYGKRKAAMLQKLTDQIEMLANKVKFILAVIQGDLIVSNRKKVELLHEL 1105

Query: 416  -ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             E+       ++ K      D+       D            +L +++  LT    D +R
Sbjct: 1106 VEMGYDKLYPNNSKGKNSDEDEEKDDQEGDEEEGDLTKGYNYLLSMKIWSLTKERVDKLR 1165

Query: 475  NELNSLGIEIKECLD 489
             EL    +E K    
Sbjct: 1166 AELKEREVEYKSLEA 1180


>gi|257362157|gb|ACV53178.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 96/188 (51%), Positives = 134/188 (71%), Gaps = 1/188 (0%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDYACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
            +S R  LI+GQGN+G+ D     AA RYTE +L K A  LL +LG+ TVD++PN+DGS 
Sbjct: 61  PFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSL 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM +++
Sbjct: 121 EEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVVQ 180

Query: 222 GPDFPTGA 229
           GPD+PT A
Sbjct: 181 GPDYPTEA 188


>gi|238810564|dbj|BAH70256.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 117/154 (75%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|238810566|dbj|BAH70257.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810568|dbj|BAH70258.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810570|dbj|BAH70259.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810572|dbj|BAH70260.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810574|dbj|BAH70261.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810576|dbj|BAH70262.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810578|dbj|BAH70263.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810580|dbj|BAH70264.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810582|dbj|BAH70265.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810584|dbj|BAH70266.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810586|dbj|BAH70267.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 117/154 (75%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
          Length = 1058

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 183/488 (37%), Gaps = 62/488 (12%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                 + ++  T++ + D +    + ++    + R+IP + DGLKP  R+ILF   +  +
Sbjct: 613  FQPGNQLDQSKTNIPVPDFIDKELILFSRY-DVERSIPSVVDGLKPSQRKILFAAFKRNL 671

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
                K  + +    E+ G +H  G  ++  A+  MAQD+    ++ LLL  GQ     + 
Sbjct: 672  VQEIKVAQFSGYVSEISGYHH--GEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLLG 729

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L      + +      + +  + DGS  EP       P +LVNG  G
Sbjct: 730  GKDSASARYIFTKLSPVTRQVFNQADDVLLKYLED-DGSSIEPEWYVPAIPFLLVNGANG 788

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP++N  +++D    +I   ++              P        TG  +  
Sbjct: 789  IGTGFSTDIPSYNPKDIIDNVKRLISGKEM-------------VPMSPWYKEFTG--SIV 833

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                G+   +GV+ +       + +VV+E+P     +   +   E + EK++  I D R+
Sbjct: 834  QNDNGTFTCKGVAKV-----SGKNVVVSELPIGTWTSDY-KDFLEGLVEKKV--IVDFRE 885

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            +   +     I+        ++     +   +    +++     G   +    + I++ +
Sbjct: 886  KHTEKNVLFEIDYSGEPDISIL-----KLEKVIRTTNMHAFDPQGKIKKYACSLDIIRDW 940

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R+    +R  YL+     +A +       +  +     ++           EL    
Sbjct: 941  FEVRKTFYTKRKAYLIKDLSHKAAIAENKHRFITLIVND-ELVLSKKTESVILSEL---- 995

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      Y S+   + +L++ ++ LT    + +R E   L 
Sbjct: 996  ---------------------RTLKFYKSDGSYKYLLDMSISSLTLERAEKLRLEAEKLK 1034

Query: 482  IEIKECLD 489
             E+    +
Sbjct: 1035 KELTILEN 1042


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 101/511 (19%), Positives = 191/511 (37%), Gaps = 41/511 (8%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            V+ ++ +    + ++    + R+IP + DG KP  R++L+   +  ++   K  + A   
Sbjct: 699  VNYSEFINRELVLFSQYDNV-RSIPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYI 757

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
            GE    +H  G+ ++   +  MAQ +    +L LL   GQ     + G   A+ RY   R
Sbjct: 758  GEHSAYHH--GDMSLNGTIIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTR 815

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L+K A  +        +++  N DG   EP       P VLVNG  GI  G ++ I  H+
Sbjct: 816  LEKIARAIFHPDDDALLNYL-NDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHD 874

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGV 253
              EV+     +I+    +   LM     P F      I   +G +       G I   G 
Sbjct: 875  PREVIANIKKMING---EEPELM----HPHFAGYTGEITAESGSREGSYIVEGKIERTGD 927

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYRVV 311
            +           +++TE+P           +  L+   +K   +I+D ++          
Sbjct: 928  T----------TLLITELPIGKWTQDYKGFLEGLMIGTDKSPSEISDFKENHTDTTVSFT 977

Query: 312  IE-----LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
            +      + +       L   ++ ++  S  ++ +   NG   +    + IL+ F   R 
Sbjct: 978  VTASKDAIDKFEKEKGGLVGKFKLSTTISTKNMTLFDTNGKIHKYKASVDILRTFFHHRL 1037

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE-TARRELMQRSWNAS 425
            E  V+R   LL K R    V    A  V  + +   ++      E  A  +L        
Sbjct: 1038 EYYVKRKDMLLEKMRRELKVYDNKARFVEEVCKGDLVVSNRKRAELLADLQLRGYDLYPR 1097

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++K      +D +          L++     +L +++  LT    +++R +      E++
Sbjct: 1098 EVKKSETEEEDDTSVEEDASDAELAKG-YEYLLGMKIWSLTFERAEELRRQKAEKADEVE 1156

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
            +     +S       I    L   +E    R
Sbjct: 1157 KLEG--TSPE----AIWMTDLEAIEEALDER 1181


>gi|190888752|gb|ACE96001.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 118/158 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 179/442 (40%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   ++ +D +    + ++ +    R+IP L DGLKP  R+++F   +   
Sbjct: 663  LPERYLYTKGTKHITYSDFINLELVLFSNS-DNERSIPSLVDGLKPGQRKVMFTCFKRN- 720

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+   
Sbjct: 721  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLT 778

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    +D++   DG   EP+      P VLVNG  
Sbjct: 779  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLDYQ-TDDGQRIEPLWYLPIIPMVLVNGAE 837

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  HN  E++     +I++ D            P  P      GR    + 
Sbjct: 838  GIGTGWSTKIANHNPREIIRNLRRMINSED----------PLPMHPWYKNFRGRIEYVS- 886

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
                 G  V  G  +I+   GDR  I +TE+P  V      E + E++     K    ++
Sbjct: 887  ----DGRYVHTG--NIQMLPGDR--IEITELPLGVWTQTYKENVLEVLSNGTDKVKAVVS 938

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R V+    G      S +    ++++ TS  S   ++    +       
Sbjct: 939  EYREYHTDTTVRFVVSFAPGEFNRLRSEEGGFYRVFKLTSSLSTNQMHAFDQSNCLRRFP 998

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            + I ILK F   R E   RR  YL+ +   +A  L   A  +    E   ++      + 
Sbjct: 999  SSIDILKEFYTLRVEYYCRRKDYLVGQLTAQADRLSDQARFILEKCEKTLVVENKQ-RKA 1057

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL +R +    +K+    I
Sbjct: 1058 MCEELAKRGYRPDPVKEWQRSI 1079


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 200/550 (36%), Gaps = 63/550 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   +K   S+S  D +    + ++ N    R+IP L DGLKP  R++LF   +
Sbjct: 731  EQGLTEEYLYDKDTRSISFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTCFK 789

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G  ++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 790  RADKKEVKVAQLAGAVGEMSAYHH--GEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTR 847

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   +  + + F    +   +         P VLVNG
Sbjct: 848  LQGGKDSASPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQRIEPEWYCP-IIPTVLVNG 906

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI    +T +P +N  E+VD    +I   D            P  P      G     
Sbjct: 907  AEGIGTAWSTKVPNYNPREIVDNIRRLIRGED----------PKPMVPWFKNFRGTIEQL 956

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
            +           R     E      + + +TE+P +V      E + E +    +K+   
Sbjct: 957  DD---------QRFACSGEIAILRDDTLEITELPIRVWTQNYKESVLEPLLEGSDKQPAL 1007

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERF 352
            I D ++       R VI++      D  +  L++   LQ+  + + + L    G   +  
Sbjct: 1008 IQDFKEYHTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVLFDAAGCLRKFR 1067

Query: 353  TLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN----L 397
             +  I K F   R++  + R  +           L N+AR     + G  +        +
Sbjct: 1068 NVEEICKEFFETRKKKYIERKAFQEGMLRAQSERLSNQARFILAKIKGEILIENKRKVAI 1127

Query: 398  DEVVRIIRFSPNPETARRELMQR----------SWNASDIKDLIDLIDDSSYTIGSDGTM 447
             E +    F P+P    +EL +R                 +D  +  +  S  +  D   
Sbjct: 1128 VEQLVKKGFDPDPVKKWKELQRRKELEMTGEVEVDEEELEQDEEEQTNVPSSPLKKDLEK 1187

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQE 504
             LS+     ++ + + +L+   +D +  E  +   E+K   D+  +    + L   + + 
Sbjct: 1188 KLSDY--DYLVGMAILKLSEEEKDKLLRESEAKMSELKTLEDMTWADLWNADLDNFLVEL 1245

Query: 505  LLSVKDELDT 514
                  E   
Sbjct: 1246 QKQEAKEKGD 1255


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 102/524 (19%), Positives = 190/524 (36%), Gaps = 60/524 (11%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            + I + +    + +++     R+IP + DGLKP  R++++GM +  ++   K  + A   
Sbjct: 721  IEIKNFINQELILFSM-ADNIRSIPSVVDGLKPGQRKVIYGMFKKNLKNEAKVEQLAGYI 779

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECR 134
             E    +H  G  ++   +  +A ++  S  + L+  +G FGS    G   A  RY    
Sbjct: 780  SEQTAYHH--GETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIFTM 837

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
              + A  L D      +++  N +G + EP       P +LVNG  GI  G +T IP  N
Sbjct: 838  PSRMARLLFDKRDDPILNYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPNFN 896

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              ++V     +I N              P  P      G  G        R  +      
Sbjct: 897  PSDLVKNIRHLIKNE-------------PLEPMHPWYRGFKGTIQQMTPDRYKVSGI--- 940

Query: 255  HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIE 313
             IE+ S D   + +TE+P ++    M E +  L+   +    I D  +    +     ++
Sbjct: 941  -IEQVSDD--TVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHFRVK 997

Query: 314  LKRGASADVILNQLY-RYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVV 370
            L +   A  +   L  ++   ++L + NMVA +  G   +  +   ILK F   R     
Sbjct: 998  LTKEGMATALAEGLENKFKVARTLATSNMVAFDPQGRIRKYDSAYDILKEFYEVRLRYYQ 1057

Query: 371  RRTKYLL-----------NKARDRAHVLVGLAIA----VANLDEVVRIIRFSPNPETARR 415
            RR ++L+           N+AR    ++ G  +      + L + +R   F   P+  + 
Sbjct: 1058 RRKEHLVNDLETVYTKISNQARFIHMIIEGTLVVAKKKRSVLVQELREKGFKAIPKPKKG 1117

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-- 473
             L + +   +      D   +                    +L + +  LT     ++  
Sbjct: 1118 RLAEIAAQETAANRDADDDAEEEDASPEADDF-------TYLLNMPVYSLTYERYMNLLK 1170

Query: 474  -----RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
                   EL+ L     + + +           K+     K   
Sbjct: 1171 KKGECEEELDKLMKITPKDIWLTDLEGFEKEWEKELDEDAKTRF 1214


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 99/513 (19%), Positives = 192/513 (37%), Gaps = 43/513 (8%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            V+ ++ +    + ++    + R+IP + DG KP  R++L+   +  ++   K  + A   
Sbjct: 671  VNHSEFVNRELVLFSQYDNV-RSIPHIMDGFKPSQRKVLYACFKKKLKAEIKVAQLAGYI 729

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
            GE    +H  G+ ++   +  MAQ +    +L LL   GQ     + G   A+ RY   R
Sbjct: 730  GEHSAYHH--GDMSLNGTIIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTR 787

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L+K A  +        +++  N DG   EP       P VLVNG  GI  G ++ I  H+
Sbjct: 788  LEKIARAIFHPDDDALLNYL-NDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHD 846

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGV 253
              EV+     +I+    +   LM     P F      I   +G +       G I   G 
Sbjct: 847  PREVIANIKKMING---EEPELM----HPHFAGFTGEITAESGSREGSYIVEGKIERTGD 899

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVV 311
            +           +++TE+P           +  L+   +K   +I+D ++          
Sbjct: 900  T----------TLLITELPVGKWTQNYKAFLEGLMSGTDKDPSEISDFKENHTDTTVSFT 949

Query: 312  I-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
            +      + +       L + ++ ++  S  ++++ + +G   +    + IL+ F   R 
Sbjct: 950  VTATEENINKFEYGKGGLLKKFKLSTTMSTANMHLFSEDGKIVKYNGSVDILRTFFHHRL 1009

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            E  V+R   LL K R    V    A  V  + +   ++           EL  + ++   
Sbjct: 1010 EYYVKRKDMLLEKLRRELKVYDNKARFVEEVYKGDLVVSNRK-RSELLFELRDKEYDIYP 1068

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSLGIE 483
             +      DD   ++ S                +L +++  LT     ++R +      +
Sbjct: 1069 KESNQAETDDEDESMESVEENASDAELAKGYEYLLGMKIWSLTFERAKELRRQKTEKAED 1128

Query: 484  IKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
            +++     +S       I Q  L   +E    R
Sbjct: 1129 VEKLEG--TSPE----AIWQTDLDAIEEALDER 1155


>gi|89898786|ref|YP_515896.1| DNA topoisomerase IV subunit A [Chlamydophila felis Fe/C-56]
 gi|89332158|dbj|BAE81751.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 479

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 131/506 (25%), Positives = 215/506 (42%), Gaps = 49/506 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++N    L         PDF +G V+       + Y  G GSI IR    I  
Sbjct: 173 IEAQIAILNNRTFTL--------LPDFYSGGVM-----DASEYQDGLGSITIRASIQI-- 217

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +++ EI        ++  I    +   I    D   +       + I+L +G 
Sbjct: 218 --VDSKTLIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  IL  L++YT  Q + +    A+   KP   ++  ILK      E          L 
Sbjct: 274 YAKDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEILKLHTEALEGY--------LQ 325

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K     H  +       +L+ +    R          +L  +       + ++  +    
Sbjct: 326 KELQILHDELAQEHYYKSLEYIFIKHRLYDIVRELLSKLGNKVSQEDLHEAVLASLAPFI 385

Query: 439 YTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            ++           Q  + +  L + ++          +L  +  +       LS+   +
Sbjct: 386 SSLPEAPC-----KQATSQLASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSN---M 437

Query: 498 LGIIKQELLSVKDELD--TPRRTRIV 521
                + L  +  +      R+T+I+
Sbjct: 438 KKFTIKYLKGLLAKYGELGKRKTQIL 463


>gi|37999026|dbj|BAD00083.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp. equi]
 gi|197941219|gb|ACH78329.1| DNA topoisomerase [Streptococcus equi subsp. zooepidemicus]
          Length = 176

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 122/176 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 176


>gi|238810482|dbj|BAH70215.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810484|dbj|BAH70216.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810486|dbj|BAH70217.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810488|dbj|BAH70218.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810490|dbj|BAH70219.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810492|dbj|BAH70220.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810494|dbj|BAH70221.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810496|dbj|BAH70222.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810498|dbj|BAH70223.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810500|dbj|BAH70224.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810502|dbj|BAH70225.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810504|dbj|BAH70226.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810506|dbj|BAH70227.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810508|dbj|BAH70228.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 119/154 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 104/522 (19%), Positives = 197/522 (37%), Gaps = 38/522 (7%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +V  ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KANTNVNESMNYNVRTVRYSEFVDKELILFSV-ADCERSIPSVIDGLKPGQRKIIFSSFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  +AQ++  S  + L+  +GQ    
Sbjct: 706  RRLTRSIKVVQLAGYVSEHAAYHH--GEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A ++        VD++ + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  EV+D  + ++   ++              P      G  G  
Sbjct: 823  TSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQ-------------PMKPWYFGFAGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  +G  V  G +++         + +TE+P         +K  E +REK +  +  
Sbjct: 870  E--EKEKGKFVSTGCANVRPDG----VVQITELPIGTWTQGY-KKFLEELREKEV--VVQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +       R    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFLHPEVLHHWVAQGCVEERLQLREYIHATNIIAFDREGQITKYRDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   +R  +L+   R  A  L  +   V  + +  R+I      +   
Sbjct: 981  EAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRFVTEVVDG-RLIVTRRRKKELL 1039

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             EL QR +    ++    +   +      +G    +      +  L L      G D+  
Sbjct: 1040 EELRQRGYAPFPLQQKKKVSSTTIQQGEEEGAADATHATAEDVF-LVLQPAVDEGGDEDN 1098

Query: 475  NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
             E   +    ++   +L    RL  +  + +  ++ +L   R
Sbjct: 1099 QETPEMRRAARDYDYLLG--MRLWNLTAEMIARLQSQLQKAR 1138


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/501 (19%), Positives = 182/501 (36%), Gaps = 43/501 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            ++    +S +D +    + ++    L R+IP + DGLKP  R+IL+   +  +   KK +
Sbjct: 673  DQSADRISYSDFINRELILFSR-ADLDRSIPSMLDGLKPGQRKILYACFKRNL---KKDI 728

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A++S  V     + HG  ++   +  +AQD+  S  + L+   G FG+    G   A+
Sbjct: 729  KVAQLSAYVAEHSAYHHGEGSLASTIVNLAQDFVGSNNVNLLHPSGQFGTRLQGGKDAAS 788

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL      L ++     + +  N +G   EP       P VL+NG  GI  G +
Sbjct: 789  ARYIYTRLAALTRHLFNENDDQLLTYL-NEEGQSIEPEWYMPILPTVLINGADGIGTGWS 847

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
            T IP +N  +++     +++    +                    G  G I  A     G
Sbjct: 848  TTIPNYNPRDIMANLRRLLEGEAQEA-------------MHPWYRGFNGNIAEAATHKSG 894

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA------ELVREKRIVDIADLR 300
            S        +  T      I +TE+P +       E +       E VR      IAD  
Sbjct: 895  SRSYVVSGTV--TQTGPNTIEITELPIRKWTQDYKEFLETLLRPTEKVRRDEAPIIADYS 952

Query: 301  DESDRQGYRVVIELKRGASADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            +         V+EL  G   +++     L+  ++ T+  +  ++ +   +G      +  
Sbjct: 953  EHHSDSNVHFVVELLPGKMEELLASPGGLDGKFKLTTKIATSNMMLFDHSGMIKHYSSPE 1012

Query: 356  GILKAFVAFREEVVVRRTKYLLNKA---RDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
             I+  F   R +   +R   +L  A   + RA   +   +AV      VR  + +     
Sbjct: 1013 MIVAEFYELRLDYYEKRRIAMLKVASLDQKRADNRIRFILAVVEGRLEVRGRKRADLERD 1072

Query: 413  ARRELMQRSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLSEVQT--RAILELRLARLTGLG 469
               +   R   A   +K  I  + +             +        +L + +  LT   
Sbjct: 1073 LEAQGFDRLGKAGAKVKVRITEVAEDGEEGEGGEAAVTASNGASYDYLLSMSIYNLTREK 1132

Query: 470  RDDIRNELNSLGIEIKECLDI 490
               ++ E       ++    I
Sbjct: 1133 IAKLQEEAAKAKERVEYLCSI 1153


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/526 (20%), Positives = 197/526 (37%), Gaps = 52/526 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +E  +     ++  D +    + ++ +    R+IP L DGLKP  R+ILF   +  + 
Sbjct: 640  DPEENVDHSQKHLTYKDFVNKELINFSNS-DNARSIPSLCDGLKPGQRKILFACFKRNL- 697

Query: 67   WNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
              K  +K A++SG V     + HG  ++   +  MAQ +    ++  L+  GQ    ++ 
Sbjct: 698  --KNEIKVAQLSGYVAEHSAYHHGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMG 755

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L K    +  +     + +    +G   EP+      P  L+NG  G
Sbjct: 756  GKEAASARYIHTCLNKITRCVFPEPDDHIL-YYLEDEGQQVEPIYYLPIIPTALLNGADG 814

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP +N  E+VD             +  M  +   D        G TG     
Sbjct: 815  IGTGWSTSIPCYNPRELVDSI-----------EKRMMGVPFTDL--LPWYKGFTG--EIS 859

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIADL 299
               +  I + G  H+     +   I +TE+P +         + E +   + +  +I D+
Sbjct: 860  NNEKSQITVSGKYHL----VNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPEIEDI 915

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIG 356
            ++         V+++       V    + +Y  LQS      + L  ++        +  
Sbjct: 916  KEYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICE 975

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            I++ F   R     RR +YL++K      +L            ++ +I  S     A+R 
Sbjct: 976  IMEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRF------ILAVINESIRVRNAKR- 1028

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                       KDLI  +    Y    D     S   T  + + +         +   NE
Sbjct: 1029 -----------KDLIKELSVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNE 1077

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            +N+        L + S     +  IKQE  + +DELD    T +++
Sbjct: 1078 INAKEYNYLLSLPMWSLTYEKVEEIKQEQKNKQDELDKLVATEVID 1123


>gi|238810552|dbj|BAH70250.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810554|dbj|BAH70251.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810556|dbj|BAH70252.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810558|dbj|BAH70253.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810560|dbj|BAH70254.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810562|dbj|BAH70255.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1680

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/526 (20%), Positives = 197/526 (37%), Gaps = 52/526 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +E  +     ++  D +    + ++ +    R+IP L DGLKP  R+ILF   +  + 
Sbjct: 658  DPEENVDHSQKHLTYKDFVNKELINFSNS-DNARSIPSLCDGLKPGQRKILFACFKRNL- 715

Query: 67   WNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
              K  +K A++SG V     + HG  ++   +  MAQ +    ++  L+  GQ    ++ 
Sbjct: 716  --KNEIKVAQLSGYVAEHSAYHHGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMG 773

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L K    +  +     + +    +G   EP+      P  L+NG  G
Sbjct: 774  GKEAASARYIHTCLNKITRCVFPEPDDHIL-YYLEDEGQQVEPIYYLPIIPTALLNGADG 832

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP +N  E+VD             +  M  +   D        G TG     
Sbjct: 833  IGTGWSTSIPCYNPRELVDSI-----------EKRMMGVPFTDL--LPWYKGFTG--EIS 877

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIADL 299
               +  I + G  H+     +   I +TE+P +         + E +   + +  +I D+
Sbjct: 878  NNEKSQITVSGKYHL----VNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPEIEDI 933

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIG 356
            ++         V+++       V    + +Y  LQS      + L  ++        +  
Sbjct: 934  KEYHAGNRVHFVVKMSEKQMEKVQREGIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICE 993

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            I++ F   R     RR +YL++K      +L            ++ +I  S     A+R 
Sbjct: 994  IMEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRF------ILAVINESIRVRNAKR- 1046

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                       KDLI  +    Y    D     S   T  + + +         +   NE
Sbjct: 1047 -----------KDLIKELSVQGYVQMKDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNE 1095

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            +N+        L + S     +  IKQE  + +DELD    T +++
Sbjct: 1096 INAKEYNYLLSLPMWSLTYEKVEEIKQEQKNKQDELDKLVATEVID 1141


>gi|37999028|dbj|BAD00084.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 121/174 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|329942344|ref|ZP_08291154.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|313847582|emb|CBY16570.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila psittaci RD1]
 gi|325506857|gb|ADZ18495.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|328815254|gb|EGF85242.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|328914216|gb|AEB55049.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila psittaci 6BC]
          Length = 479

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/505 (24%), Positives = 217/505 (42%), Gaps = 47/505 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+    +    + K  K A I+G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWT---LFCMDDGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++N    L         PDF +G V+       + Y  G GSI +R       
Sbjct: 173 IEAQIAILNNRAFTL--------LPDFYSGGVM-----DASEYQDGLGSITMRASIQ--- 216

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + D++ +++ EI        ++  I    +   I    D   +       + I+L +G 
Sbjct: 217 -TVDQKTLIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  I+  L+++T  Q + +    A+   KP   ++  ILK      E          L 
Sbjct: 274 YAKDIIEPLFQHTECQVVLTSRPTAIYNNKPIETSVSEILKLHTEVLEGY--------LQ 325

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +     H  +       +L+ +    R          +L  +       + ++  +    
Sbjct: 326 QELQILHDELAQEHYYKSLEYIFIKHRLYDTVRENLSKLKNKVSQEDLHEAVLTALAPFL 385

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            ++        S+  T  +  L + ++     +    +L ++  +       LS+   + 
Sbjct: 386 SSLPEIP----SKQATGQLASLAIKKILCFNENSYTKDLATIEKKQAAVKKDLSN---MK 438

Query: 499 GIIKQELLSVKDELD--TPRRTRIV 521
               + L  +  +      R+T+++
Sbjct: 439 KFTIKYLKGLLAKYGELGKRKTQVL 463


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
            kowalevskii]
          Length = 1649

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/504 (21%), Positives = 198/504 (39%), Gaps = 43/504 (8%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  +S      K    +S  D +    + ++ N+   R+IP + DGLKP  R++LF   +
Sbjct: 692  EDGLSDLYLYNKDTRYISYNDFVNKELVLFS-NMDNERSIPSMVDGLKPGQRKVLFTCFK 750

Query: 63   MGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ VK A+++G V     + HG A++   +  +AQ++  S  L L++  G FG+
Sbjct: 751  RN---DKREVKVAQLAGSVAEHSAYHHGEASLMGTIINLAQNFVGSNNLNLLQPIGQFGT 807

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY    L   A  L+       +  +   D    EP   C   P VLVN
Sbjct: 808  RLHGGKDAASPRYIFTMLSPLARLLMPASDDPNLT-QLFDDNQRIEPEWYCPIIPMVLVN 866

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +T I  +++ E+V     +ID  +            P  P+     G    
Sbjct: 867  GAEGIGTGWSTKIANYDVREIVANIRLMIDGEE----------PLPMLPSYKGYKGAIEE 916

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIV 294
              A          R     E    D   + +TE+P +V      E + E +    EK   
Sbjct: 917  IEA---------NRYACSGEIAIVDNNTLEITELPVRVWTQVYKETVLEPMLHGSEKVQP 967

Query: 295  DIADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
             I D ++       ++V+++         +  L+++++  +  S+ +  +   +G   + 
Sbjct: 968  LITDYKEYHTDTTVKIVVKMSDEKLLKAEEQGLHKVFKLQNTISVTNSVLFDSHGCIKKY 1027

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLN-KARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              ++ ILK F   R E    R +YL    A +   +       +  ++  + I   S   
Sbjct: 1028 DDIMEILKEFFELRLERYRIRKEYLEGLLAAESNKLDNQARFILEKIENKIVIENKSK-- 1085

Query: 411  ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV-----QTRAILELRLARL 465
                  L+QR +++  IK   +  + ++    SD     S           +L + L  L
Sbjct: 1086 RDLISMLVQRGYDSDPIKAWKESQNRNNEDEDSDTDSMYSSATGGGPDFNYLLGMALWSL 1145

Query: 466  TGLGRDDIRNELNSLGIEIKECLD 489
            +   +D++    ++   E++   D
Sbjct: 1146 SKERKDELLKNRDTKAAELEVLRD 1169


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 100/434 (23%), Positives = 179/434 (41%), Gaps = 38/434 (8%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            KG   ++  D +    + ++ N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 668  KGTKHITYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN---DKREVK 723

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
             A++SG V     + HG  ++   +  +AQ++  +  + L+E +G FG+    G   A+ 
Sbjct: 724  VAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASA 783

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    +      +   L    +D++ + DG   EP       P VLVNG  GI  G +T
Sbjct: 784  RYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPQWYLPIIPMVLVNGAEGIGTGWST 842

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             I  HN  E+++    +I+  +               P      GR    +      G  
Sbjct: 843  KIANHNPREIMNNLRKMINGEE----------PKVMHPWYKNFTGRMEYVS-----DGRY 887

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            V  G  +I+   G+R  + +TE+P  V      E + E +    EK    ++D R+    
Sbjct: 888  VQTG--NIQILPGNR--VEITELPVGVWTQNYKENVLEPLANGTEKVKAIVSDYREYHTD 943

Query: 306  QGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
               R VI    G      + +   +++++ T+  S   ++    N       T + ILK 
Sbjct: 944  TTVRFVITFATGEFERIQAEEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAVDILKE 1003

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R E   RR  +L+ +   +A  L   A  +       +++  +   +    EL++R
Sbjct: 1004 FYQLRREYYARRKDFLVGQLTAQADRLSDQARFILE-KCEKKLVVENKQRKAMCDELLKR 1062

Query: 421  SWNASDIKDLIDLI 434
             +    +K+    I
Sbjct: 1063 GYRPDPVKEWQRRI 1076


>gi|1296993|emb|CAA64978.1| DNA gyrase subunit A [Rhizobium phaseoli]
          Length = 148

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/148 (81%), Positives = 137/148 (92%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WS
Sbjct: 1   RDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPV
Sbjct: 61  LRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           V+ A++PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VVPAKFPNLLVNGAGGIAVGMATNIPPH 148


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/530 (20%), Positives = 205/530 (38%), Gaps = 50/530 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG  S++  D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 660  LPERYLYTKGTKSITYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 717

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  +  + L+E +G FG+   
Sbjct: 718  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLS 775

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    +D++ + DG   EP+      P VLVNG  
Sbjct: 776  GGKDCASARYIFTIMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAE 834

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E++     +I+  +               P     LGR    + 
Sbjct: 835  GIGTGWSTKISNYNPREIMKNLRKMINGQE----------PSVMHPWYKNFLGRMEYVS- 883

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVD-IA 297
                 G  +  G  +I+  SG+R  + ++E+P  V      E + E +     ++   I+
Sbjct: 884  ----DGRYIQTG--NIQILSGNR--LEISELPVGVWTQNYKENVLEPLSNGTEKVKGIIS 935

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R VI    G      + +    ++++ T+  S   ++    N       
Sbjct: 936  EYREYHTDTTVRFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFP 995

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T I ILK +   R E   RR  +L+ +   +A  L   A  +       +++  +   + 
Sbjct: 996  TAIDILKEYYKLRREYYARRRDFLVGQLTAQADRLSDQARFILE-KCEKKLVVENKQRKA 1054

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               EL++R +    +K+    I         +              E   A  +   +  
Sbjct: 1055 MCDELLKRGYRPDPVKEWQRRIKMEDAEQADEED-----------EEEEEAAPSVSSKAK 1103

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
               E++      K+  D+      L   +       K+EL   R T++ E
Sbjct: 1104 KEKEVDP-EKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDTKLSE 1152


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 98/508 (19%), Positives = 195/508 (38%), Gaps = 46/508 (9%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  +S     EK   +VS +D +    + Y+    + R+IP++ DG KP  R+++F  ++
Sbjct: 667  EIGLSERYLYEKDTRAVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLK 725

Query: 63   MGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +++ VK A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+
Sbjct: 726  RN---DRREVKVAQLAGSVAEHSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGT 782

Query: 120  V--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY    L   A ++        +      D    EPV      P VLVN
Sbjct: 783  RLAGGKDAASPRYIFTMLSPLARYIFHKHDDALLK-HEYDDNQKIEPVFYIPVIPMVLVN 841

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G  T IP +N  E+++    ++D  D               P         G+
Sbjct: 842  GADGIGTGWMTKIPNYNPREIIENLQRMMDGIDPK-------------PMTPYYKNFKGV 888

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIV 294
              +     G         I     D+  + +TE+P         E + E +    +K   
Sbjct: 889  VESC----GDFRYVISGEISVIGPDK--LEITELPIGTWTQTYKETVLEPMLHGSDKTPA 942

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPER 351
             I D ++ +       ++ L R    ++  + L++   +Q+  ++  +          + 
Sbjct: 943  VITDYKEYNTDTAVHFIVMLNRDKLLELEKDGLHKAFKIQTTMTITSMCAFDENQCLNKY 1002

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             ++I ILK F   R +   +R  YL    +  A  L   A  +    +   +I      +
Sbjct: 1003 DSVIQILKRFYKVRMDTYHKRKDYLEGVLQAEAAKLSNQARFILEKCDGTLVIENKK-KK 1061

Query: 412  TARRELMQRSWNASDIKD----------LIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
                EL++R++ +  +            L ++ ++      +   + +       +L + 
Sbjct: 1062 DMIAELVRRNYESDPVVAWKLSQNREQVLEEVAENDDENAAAATAITMESENFDYLLGMT 1121

Query: 462  LARLTGLGRDDIRNELNSLGIEIKECLD 489
            +  LT   +DD+  + +    E+K    
Sbjct: 1122 MWTLTKEKKDDLLRQRDEKVAELKRLQA 1149


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/511 (20%), Positives = 202/511 (39%), Gaps = 34/511 (6%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            EH +  +    +   S+S  D +    + ++ +    R+IP + DGLKP  R+++F   +
Sbjct: 676  EHNLPEEYLYGQETKSLSYHDFINKELVLFSNS-DNERSIPCMVDGLKPGQRKVVFCCFK 734

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+
Sbjct: 735  RN---DKREVKVAQLAGSVAEMSAYHHGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGT 791

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLV 176
                G   A+ RY    L   A  L   +  + + +  NYD     EP       P VL 
Sbjct: 792  RLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKY--NYDDYLRVEPEWYMPIIPLVLA 849

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NGG GI  G A+ IP +++ E+++    +I+      +  + ++  P +      +    
Sbjct: 850  NGGEGIGTGWASRIPKYDVREIINNIHRMING-----EEPLPMVNLPSYKGFKGTI--DE 902

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
            +        G + I   + IE T    E  V T  P    K  +LE +      K    I
Sbjct: 903  LAKNQYVNNGEVAIIDSTTIEIT----ELPVKTWTPGLTYKENVLEVMLNGTE-KVPALI 957

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFT 353
             D ++       R V+++      +     L++   LQ+L + N + L  +     +  +
Sbjct: 958  TDYKEYHTDTTVRFVVKMTEERLREAEAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYES 1017

Query: 354  LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
            +  ILK F   R +  V R  +L+      +  L   A  +    +   +I   P  +  
Sbjct: 1018 VQDILKEFFELRMKYYVLRKDWLVGMLGAESAKLSNQARFILEKIQGTLVIENKP-KKEL 1076

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL----SEVQTRAILELRLARLTGLG 469
             R L Q  +++  +K   D  +        D         S      +L + +  LT   
Sbjct: 1077 IRMLQQMGYDSDPVKAWKDAQEKEEEEDAEDDDEKEKEDTSGPDYNYLLSMPMWYLTKEK 1136

Query: 470  RDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            +D++  + ++   E+      + + + L   
Sbjct: 1137 KDELCKQRDAKMTELNTLK--MKAPADLWKE 1165


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 200/550 (36%), Gaps = 63/550 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   +K   S+S  D +    + ++ N    R+IP L DGLKP  R++LF   +
Sbjct: 731  EQGLTEEYLYDKDTRSISFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTCFK 789

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G  ++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 790  RADKKEVKVAQLAGAVGEMSAYHH--GEQSLMSTIVNLAQDYVGSNNINLLLPIGQFGTR 847

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   +  + + F    +   +         P VLVNG
Sbjct: 848  LQGGKDSASPRYIFTQLNPVTKALFPSVDDNVLRFLFEENQRIEPEWYCP-IIPTVLVNG 906

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI    +T +P +N  E+VD    +I   D            P  P      G     
Sbjct: 907  AEGIGTAWSTKVPNYNPREIVDNIRRLIRGED----------PKPMVPWFKNFRGTIEQL 956

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
            +           R     E      + + +TE+P +V      E + E +    +K+   
Sbjct: 957  DD---------QRFACSGEIAILRDDTLEITELPIRVWTQNYKESVLEPLLEGSDKQPAL 1007

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERF 352
            I D ++       R VI++      D  +  L++   LQ+  + + + L    G   +  
Sbjct: 1008 IQDFKEYHTDTTVRFVIKMSAQKLRDAEMEGLHKVFKLQTAINTSSMVLFDAAGCLRKFR 1067

Query: 353  TLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN----L 397
             +  I K F   R++  + R  +           L N+AR     + G  +        +
Sbjct: 1068 NVEEICKEFFETRKKKYIERKAFQEGMLRAQSERLSNQARFILAKIKGEILIENKRKVAI 1127

Query: 398  DEVVRIIRFSPNPETARRELMQR----------SWNASDIKDLIDLIDDSSYTIGSDGTM 447
             E +    F P+P    +EL +R                 +D  +  +  S  +  D   
Sbjct: 1128 VEQLVKKGFDPDPVKKWKELQRRKELEMTGEVEVDEEELEQDEEEQTNVPSSPLKKDLEK 1187

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQE 504
             LS+     ++ + + +L+   +D +  E  +   E+K   D+  +    + L   + + 
Sbjct: 1188 KLSDY--DYLVGMAILKLSEEEKDKLLRESEAKMSELKTLEDMTWADLWNADLDNFLVEL 1245

Query: 505  LLSVKDELDT 514
                  E   
Sbjct: 1246 QKQEAKEKGD 1255


>gi|238810522|dbj|BAH70235.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810524|dbj|BAH70236.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810526|dbj|BAH70237.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810528|dbj|BAH70238.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810530|dbj|BAH70239.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810532|dbj|BAH70240.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810534|dbj|BAH70241.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810536|dbj|BAH70242.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810538|dbj|BAH70243.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810540|dbj|BAH70244.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810542|dbj|BAH70245.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 199/523 (38%), Gaps = 39/523 (7%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +V  ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KTNTNVNESMNYNVRTVRYSEFVDKELILFSV-ADCERSIPSVIDGLKPGQRKIIFSSFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  +AQ++  S  + L+  +GQ    
Sbjct: 706  RRLTRSIKVVQLAGYVSEHAAYHH--GEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A ++     +  VD++ + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTNIARYIYHPSDEFVVDYKDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  EV+D  + ++   ++              P      G TG  
Sbjct: 823  TSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQ-------------PMKPWYFGFTGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  RG  V  G +++         + +TE+P         +K  E +REK +  +  
Sbjct: 870  E--EKERGKFVSTGCANVRPDG----VVQITELPIGTWTQGY-KKFLEELREKEV--VVQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +       R    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFLHPEVLHHWVAQGCVEERLQLREYIHATNIIAFDREGQITKYRDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   +R  +L+   R  A  L  +   V  + +  R+I      +   
Sbjct: 981  EAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRFVTEVVDG-RLIVTRRRKKELL 1039

Query: 415  RELMQRSWNASDIKDLIDLIDDS-SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
             EL QR +    ++    +   +       +G    +      +  L L      G D+ 
Sbjct: 1040 EELRQRGYAPFPLQQKKKVSSTTIQQGEEEEGAADATHSTAEDVF-LVLQPAVDEGGDED 1098

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
              E   +    ++   +L    RL  +  + +  ++ +L   R
Sbjct: 1099 NQETPEMRRAARDYDYLLG--MRLWNLTAEMIARLQSQLQKAR 1139


>gi|13272211|gb|AAK15779.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 147

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/147 (59%), Positives = 118/147 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + PN+LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 115/530 (21%), Positives = 196/530 (36%), Gaps = 52/530 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   VS +D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 660  LPERYLYTKGTKHVSYSDFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 717

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+   
Sbjct: 718  --DKREVKVAQLSGSVAEMSAYHHGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLT 775

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    + ++ + DG   EP+      P VLVNG  
Sbjct: 776  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLQYQVD-DGQRIEPLWYIPIIPMVLVNGAE 834

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  +++     +I+N +               P        TG    
Sbjct: 835  GIGTGWSTKIANYNPRDMITNLRRMINNEEP-------------LPLHPWYKNFTGTMEY 881

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
             + GR   V  G   I   +    +I +TE+P  V      E + E++     K    I+
Sbjct: 882  VSDGR--YVHSGNVQILPDN----RIEITELPIGVWTQNYKENVLEVLSNGTEKVKAIIS 935

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            D R+       R VI    G      S +   +++ + +S  S   ++    N       
Sbjct: 936  DYREYHTDTTVRFVITFAPGEFERLRSEEGGFHRVLKLSSSISTNQMHAFDENNCLRRFP 995

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T   IL  F   R E   RR  YL+ +   +A  L   A  +    E   +I      + 
Sbjct: 996  TPKDILVEFYKLRLEYYNRRKDYLVGQLTAQADRLSDQARFILEKCEKKLVIENKQ-RKM 1054

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               EL++R +    +K+    I         D                      G     
Sbjct: 1055 MIDELIKRGYRPDPVKEWQRRIKMEDAEAAEDDE-------------EEEESSVGASSKK 1101

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            I+ E++      ++  ++      L   +       K+EL   R  +I E
Sbjct: 1102 IKKEVDP-EKAFQKLTEVKKFDYLLGMSMWMLTEERKNELLKQRDLKIAE 1150


>gi|38327357|gb|AAR17706.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327359|gb|AAR17707.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327363|gb|AAR17709.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327365|gb|AAR17710.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327369|gb|AAR17712.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327371|gb|AAR17713.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327373|gb|AAR17714.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327379|gb|AAR17717.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327383|gb|AAR17719.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327387|gb|AAR17721.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327393|gb|AAR17724.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327395|gb|AAR17725.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327397|gb|AAR17726.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327399|gb|AAR17727.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327401|gb|AAR17728.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/150 (57%), Positives = 117/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|38327355|gb|AAR17705.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327361|gb|AAR17708.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327367|gb|AAR17711.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327375|gb|AAR17715.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327377|gb|AAR17716.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327381|gb|AAR17718.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327385|gb|AAR17720.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327389|gb|AAR17722.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327391|gb|AAR17723.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327403|gb|AAR17729.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/150 (57%), Positives = 118/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1465

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/555 (19%), Positives = 191/555 (34%), Gaps = 72/555 (12%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E        VS ++ +    + +++     R+IP + DGLKP  R+I+F   +  +  + 
Sbjct: 695  ESLSYNARDVSYSEFVHKELILFSV-ADCERSIPSVVDGLKPGQRKIMFSAFKRNLVRSL 753

Query: 70   KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFGSVDGDPP 125
            K  + A    E    +H  G  ++   +  +AQD+  +  + L+  +GQ       G   
Sbjct: 754  KVARFAGYVSEHAAYHH--GEQSLVQTIVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDH 811

Query: 126  AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            AA RY   RL   A  +        V++R + DG   EP       P VLVNG  GI  G
Sbjct: 812  AAGRYISTRLTDIARRIYHPSDDFIVEYRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTG 870

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             ATNIP ++  +V+D    +     +  + L         P      G TG        +
Sbjct: 871  FATNIPNYSPLDVIDNLNRL-----LSGEELQ--------PMKPWYFGFTGTIE--EREK 915

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            G  V  G + +         + +TE+P         + + +L        +   R+ +  
Sbjct: 916  GKFVSSGCATVRPDG----VVHITELPIGTWTQQYKKFLEDLRER---EIVIQYREHNTD 968

Query: 306  QGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAF 361
                  + +        +       R    + + + N++A +  G   +      +LK F
Sbjct: 969  VTVDFEVFIHPEVLRQWVAQGCVEERLQLREYIHATNIIAFDREGKITKYLDAESVLKEF 1028

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR- 420
               R E   RR ++LL + +  A  L  +   V  + +   I+    + +   ++L QR 
Sbjct: 1029 YLVRLEYYARRREFLLEQLQRAALKLENMVRFVNEVIDGTFIV-TRRSMKDVLKDLKQRG 1087

Query: 421  --SWNASDIKDL-----IDLIDDSSYTIGSDGTMYLSEV----QT--------------- 454
               +     K +     +D  D+               V    Q                
Sbjct: 1088 YTPFPPQQKKKMSSTTIVDEEDNDGARKILPDVFEFESVPLCEQVIGKMLCTAEPEEINM 1147

Query: 455  --------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
                      +L LR+  LT       R +   +  +    L   +S   L       L 
Sbjct: 1148 WKGVLVEYDYLLSLRMVDLTVEMAMYFRTKREQMLNKHNFVLS--ASSKDLWREDLDLLR 1205

Query: 507  SVKDELDTPRRTRIV 521
            S  ++L   RR  I 
Sbjct: 1206 SDVEKLFDERRREIA 1220


>gi|284154632|gb|ADB78417.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/189 (57%), Positives = 144/189 (76%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+ ++  RMAQD++  + L++G GNFG VDGD  AA RY E R+ K A  +L D+ KD
Sbjct: 1   DFAVXESXVRMAQDFNYVICLVDGHGNFGXVDGDSAAAMRYXEARMXKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 189/495 (38%), Gaps = 44/495 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+    + R+IP++ DG KP  R+++F  ++     +K+ V
Sbjct: 679  EKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLKRN---DKREV 734

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 735  KVAQLAGSVAEHSAYHHGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLTGGKDAAS 794

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L   A ++        +      D    EPV      P +LVNG  GI  G  
Sbjct: 795  PRYIFTMLSPLARYIFHKHDDALLK-HEYDDNQKIEPVFYVPVIPMILVNGADGIGTGWM 853

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  E+++    ++D  D               P         G+  +     G 
Sbjct: 854  TKIPNYNPREIIENLHRMMDGADPK-------------PMSPYYKNFKGVVESC----GD 896

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIV-DIADLRDESD 304
                    I     D+  + +TE+P         E + E +     +I   I D ++ + 
Sbjct: 897  YRYVISGEISVIGPDK--LEITELPIGTWTQTYKETVLEPMLHGSEKIPAIITDYKEYNT 954

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKAF 361
                  +I L R    ++    L++   +QS  ++  +          +   +I ILK F
Sbjct: 955  DTAVHFIIILNRDKLLELEREGLHKAFKIQSTTTITSMCAFDENQCLNKYENVIQILKVF 1014

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R E   +R  YL    +  +  L   A  +    +   +I      +    EL++R+
Sbjct: 1015 YKVRLETYHKRKDYLEGILKAESAKLSNQARFILEKCDGTLVIENKK-KKDMIAELVRRN 1073

Query: 422  WNASDIK--DLIDLIDDSSYTIGSDGTMY------LSEVQTRAILELRLARLTGLGRDDI 473
            +++  +    L    +     +G            + +     +L + +  LT   +DD+
Sbjct: 1074 YDSDPVMVWKLSQNREQVLEEVGEHDDENAPTATAMEKENFDYLLGMTMWTLTKEKKDDL 1133

Query: 474  RNELNSLGIEIKECL 488
              + +    E+K   
Sbjct: 1134 LRQRDEKMAELKRLQ 1148


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 104/522 (19%), Positives = 197/522 (37%), Gaps = 38/522 (7%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +   + +E     + +V  ++ +    + +++     R+IP + DGLKP  R+I+F   +
Sbjct: 647  KANTNVNESMNYNVRTVRYSEFVDKELILFSV-ADCERSIPSVIDGLKPGQRKIIFSSFK 705

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
              +  + K V+ A    E    +H  G  ++   +  +AQ++  S  + L+  +GQ    
Sbjct: 706  RRLTRSIKVVQLAGYVSEHAAYHH--GEQSLVQTIVGLAQNFVGSNNVPLLQQDGQFGTR 763

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   AA RY   RL   A ++        VD++ + DG   EP       P VLVNG
Sbjct: 764  LQGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVDYKDD-DGLSVEPFYYVPVIPMVLVNG 822

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G ATNIP ++  EV+D  + ++   ++              P      G  G  
Sbjct: 823  TSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQ-------------PMKPWYFGFAGTI 869

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                  +G  V  G +++         + +TE+P         +K  E +REK +  +  
Sbjct: 870  E--EKEKGKFVSTGCANVRPDG----VVQITELPIGTWTQGY-KKFLEELREKEV--VVQ 920

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL--YRYTSLQSLFSVNMVALN--GYKPERFTL 354
             R+ +        + L        +       R    + + + N++A +  G   +    
Sbjct: 921  YREHNTDVTVDFEVFLHPEVLHHWVAQGCVEERLQLREYIHATNIIAFDREGQITKYRDA 980

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              +LK F   R E   +R  +L+   R  A  L  +   V  + +  R+I      +   
Sbjct: 981  EAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLENMVRFVTEVVDG-RLIVTRRRKKELL 1039

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             EL QR +    ++    +   +      +G    +      +  L L      G D+  
Sbjct: 1040 EELRQRGYAPFPLQQKKKVSSTTIQQGEEEGAADATHATAEDVF-LVLQPAVDEGGDEDN 1098

Query: 475  NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
             E   +    ++   +L    RL  +  + +  ++ +L   R
Sbjct: 1099 QETPEMRRAARDYDYLLG--MRLWNLTAEMIARLQSQLQKAR 1138


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/516 (17%), Positives = 189/516 (36%), Gaps = 41/516 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +S  + +    + +++     R+IP + DGLKP  R+ILF   +  +    K  
Sbjct: 672  DHSIDKISYPEFVNKELILFSM-ADNIRSIPSVVDGLKPGQRKILFACFKRKLTKQLKVS 730

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + +    E     + HG +++   +  MAQ +  S  + L+E +G+FG+    G   A+ 
Sbjct: 731  ELSGFVSECTA--YQHGESSLQVTITGMAQTFVGSNNVNLLEPEGSFGTRLDGGKDAASP 788

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L   A  L        + +  + D    EP+      P VL+NG  GI  G +T
Sbjct: 789  RYIYTLLSPFARKLFPATDDPLLTYNLD-DDKKIEPMWYAPVVPLVLINGADGIGTGWST 847

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP +N  +VV     +++N +++             P         G     A  +   
Sbjct: 848  TIPNYNPEDVVANIRRLMNNEELE-------------PMTPWYRDWAGKVEQVAVDKFKF 894

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                         D     V E+P ++      EK+ E+++ ++   + D  D +  +  
Sbjct: 895  SGV------INQIDGVTCEVRELPIKMWTQEFKEKLEEIIKGEK-SFVKDYVDYNSPRRV 947

Query: 309  RVVIELK-RGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
              +I ++      + +   L   ++ T   +  ++      G   +  ++  ILK F   
Sbjct: 948  HFIITMESEKHMQEALAEGLVNRFKLTKTIATSNLVAFDPEGRINKYASVNDILKEFYYI 1007

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +    R   +L +   +       A  V  + +   +            +L+++ ++ 
Sbjct: 1008 RLKYYQERKDNMLKEMSKQLMKYTNQARFVQMIIK-KELAVSGRKRSEIIEDLVKKKFDK 1066

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               K       ++  T+  + +          +L + +  LT      +  ++    +E+
Sbjct: 1067 ISNKAEAQKAGETEDTVEEEDSTVGDGY--NYLLGMAIWSLTHEKVQKLLQDVADKELEV 1124

Query: 485  KEC-----LDILSSR-SRLLGIIKQELLSVKDELDT 514
             E       D+ ++     +   + +L   K E  T
Sbjct: 1125 DELIKKSPKDLWNTELDAFIEEWRIQLEEDKKEQGT 1160


>gi|38327349|gb|AAR17702.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327351|gb|AAR17703.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327407|gb|AAR17731.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327409|gb|AAR17732.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/150 (58%), Positives = 119/150 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 157/399 (39%), Gaps = 40/399 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S  D +    + Y+      R+IP++ DG KP  R++L+G  +  +   +   
Sbjct: 716  DHKEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNL---RNEC 771

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ G +     + HG +++   +  MAQ +  S  +  +E  G FGS    G   +A
Sbjct: 772  KVAQLVGYIAEHSAYHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASA 831

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L  +   + ++     + +  N +G   EP       P +LVNG  GI  G +
Sbjct: 832  ARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYS 890

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  ++++     ID             + P  P              Y   +G 
Sbjct: 891  SFIPNYNYKDIINNIKKYID-------------KEPLVPMVPW----------YKDFKGR 927

Query: 248  IVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            I   G S  E        D E + +TE+P +       E + EL+ +++   I D  D S
Sbjct: 928  IEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNS 987

Query: 304  DRQGYRVVIELKR---GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
              +     I++       + +  L ++++  S  +  ++ +   N       + + ILK 
Sbjct: 988  SHEDVCFTIKMDPTKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPNLKLQRYASELDILKD 1047

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
            F   R      R  YL++K      ++   A  +  +  
Sbjct: 1048 FCFHRLNAYTDRKNYLISKLEKEKRIISNKAKFILAIIN 1086


>gi|13272209|gb|AAK15778.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 147

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/147 (60%), Positives = 118/147 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + PN+LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|37999020|dbj|BAD00080.1| DNA topoisomerase IV subunit C [Streptococcus canis]
          Length = 176

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 123/176 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 176


>gi|832878|gb|AAA67419.1| DNA gyrase [Aliivibrio salmonicida]
          Length = 147

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 94/147 (63%), Positives = 117/147 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRI 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ +SLR +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMA 187
            Q P VL  R PN+LVNG  GIAVGMA
Sbjct: 121 EQIPAVLPTRVPNLLVNGSSGIAVGMA 147


>gi|37999016|dbj|BAD00078.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 176

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/176 (51%), Positives = 123/176 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 176


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 114/642 (17%), Positives = 228/642 (35%), Gaps = 77/642 (11%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 +  IT + I+D +    + ++++  + R+IP + DG KP  R++L+G  +  +  
Sbjct: 719  PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
              K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 778  EIKVAQLAGYVSENTGYHH--GEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGK 835

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              +A RY    L +    + + L      +  + D    EP       P +LVNG  GI 
Sbjct: 836  DFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIG 894

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +TNIP++N  ++V     +++      + L E+   P +      L   G +    +
Sbjct: 895  TGWSTNIPSYNPKDLVTNIRRLMNG-----EELQEM--TPWYKGWGGDLEPMGPQKFKVS 947

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            GR          IE+   D   + +TEIP +     + E +      ++        +E 
Sbjct: 948  GR----------IEQI--DSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH 995

Query: 304  DRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                 R VI+L        +   L   ++  S  SL ++      G   +   ++ I+K 
Sbjct: 996  HTTSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKD 1055

Query: 361  FVAFREEVVVRRTKYLLNKARDRA------------HVLVGLAIAVANLDEVVRI----- 403
            F   R E   +R  Y+ +  +++              +   L++A     ++V +     
Sbjct: 1056 FYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEHN 1115

Query: 404  -IRFSPNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT------ 454
              +FS + +  +   EL+       + +      D+                Q       
Sbjct: 1116 FTKFSKDGKPIKSSEELLTGDDADEEEETQEQEGDEDVGNTSVANIQEGEPEQAAHVPET 1175

Query: 455  -----RAILELRLARLTGLGRDDI-------RNELNSLGIEIK------ECLDILSSRSR 496
                   +L + +  LT      I         ELN+L  +        +  + L+   +
Sbjct: 1176 IYSSYDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDK 1235

Query: 497  LL---GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             L      ++ L S   +  T RR +         ++   V      ++S    VK+   
Sbjct: 1236 FLLRDEQERESLASNGKKKSTKRRAKATATKDQPNNKKVKVEPKEKKSISAKPVVKKEAS 1295

Query: 554  SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            +  +A           ++      +     +T  S    S+ 
Sbjct: 1296 NEPQASSSSKPKEKDDILSFFSSSSSSAKKTTKPSGRATSNK 1337


>gi|832831|gb|AAA87239.1| DNA gyrase [Aeromonas salmonicida]
          Length = 147

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 118/147 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRL 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNYDG+
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMA 187
              P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIAVGMA 147


>gi|37999022|dbj|BAD00081.1| DNA topoisomerase IV subunit C [Streptococcus iniae]
          Length = 176

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/175 (52%), Positives = 122/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + + 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKYTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|38327353|gb|AAR17704.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327405|gb|AAR17730.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 87/150 (58%), Positives = 118/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/536 (21%), Positives = 213/536 (39%), Gaps = 70/536 (13%)

Query: 12   EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            + + I  V+  D +    + ++    L RAIP   DGLKP  R++L+   +     +K  
Sbjct: 670  DREQINYVTYKDFIDKELVIFSHESCL-RAIPCSADGLKPGQRKVLWTCFKRK---DKSK 725

Query: 72   VKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            VK A++SG V     + HG  ++ D + ++AQ++  +  + L+E  G FGS  V G   A
Sbjct: 726  VKVAQLSGSVSEMSAYHHGEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKDHA 785

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLVNGGGGIAVG 185
            A RY   RL      L  +       F+ NYD     EP   C   P VLVNG  GI  G
Sbjct: 786  AARYIFTRLAPITRKLYPEADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIGTG 843

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP HN+ + +     +     I+    ++++                    Y   R
Sbjct: 844  WSTNIPNHNIRDCIKNIRRM-----IEGKEPLDLVPF------------------YEGYR 880

Query: 246  GSI----VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------ 295
            G+I      R VS  E    + + + +TE+P QV      +K+ ++   +          
Sbjct: 881  GTIESLGTARAVSFGEIALLESDVVEITELPPQVWTDDYKQKLMKMQGGQDDKGKELPKL 940

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYT-SLQSLFSVNMVALNGYKPE---R 351
            I D  + S     + ++ +      +     L+ Y   ++S+   N + L  +  +    
Sbjct: 941  IEDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLTVY 1000

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNP 410
                 I+K     R+   ++R  +LL K   R   +   A   + N+++ + ++      
Sbjct: 1001 NNTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKRKA 1060

Query: 411  ETARRELMQRSWNASDIKDL---------IDLIDDSSYTIGSDGTMY-LSEVQTRAILEL 460
              A+  L +R + +  +K           ++L DD       +  +   S+ Q   +L +
Sbjct: 1061 IEAK--LKERGYASDPVKAWEKKVRKEQDLELSDDEEDAADENAQLEAKSDYQ--YLLSM 1116

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG----IIKQELLSVKDEL 512
             +  LT   ++ +  E   +  +         + + L       +++ L  ++D+ 
Sbjct: 1117 PIYNLTLEKKEALLKEKGQIEHDFDVLKK--KTPTDLWEEDLLDLEKTLDKIQDDF 1170


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/536 (21%), Positives = 213/536 (39%), Gaps = 70/536 (13%)

Query: 12   EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            + + I  V+  D +    + ++    L RAIP   DGLKP  R++L+   +     +K  
Sbjct: 670  DREQINYVTYKDFIDKELVIFSHESCL-RAIPCSADGLKPGQRKVLWTCFKRK---DKSK 725

Query: 72   VKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            VK A++SG V     + HG  ++ D + ++AQ++  +  + L+E  G FGS  V G   A
Sbjct: 726  VKVAQLSGSVSEMSAYHHGEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKDHA 785

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLVNGGGGIAVG 185
            A RY   RL      L  +       F+ NYD     EP   C   P VLVNG  GI  G
Sbjct: 786  AARYIFTRLAPITRKLYPEADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIGTG 843

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP HN+ + +     +     I+    ++++                    Y   R
Sbjct: 844  WSTNIPNHNIRDCIKNIRRM-----IEGKEPLDLVPF------------------YEGYR 880

Query: 246  GSI----VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------ 295
            G+I      R VS  E    + + + +TE+P QV      +K+ ++   +          
Sbjct: 881  GTIESLGTARAVSFGEIALLESDVVEITELPPQVWTDDYKQKLMKMQGGQDDKGKELPKL 940

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYT-SLQSLFSVNMVALNGYKPE---R 351
            I D  + S     + ++ +      +     L+ Y   ++S+   N + L  +  +    
Sbjct: 941  IEDFDNNSSHDRVKFIVTMSPTQMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLTVY 1000

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNP 410
                 I+K     R+   ++R  +LL K   R   +   A   + N+++ + ++      
Sbjct: 1001 NNTTDIVKDHYELRKTYYLKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKRKA 1060

Query: 411  ETARRELMQRSWNASDIKDL---------IDLIDDSSYTIGSDGTMY-LSEVQTRAILEL 460
              A+  L +R + +  +K           ++L DD       +  +   S+ Q   +L +
Sbjct: 1061 IEAK--LKERGYASDPVKAWEKKVRKEQDLELSDDEEDAADENAQLEAKSDYQ--YLLSM 1116

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG----IIKQELLSVKDEL 512
             +  LT   ++ +  E   +  +         + + L       +++ L  ++D+ 
Sbjct: 1117 PIYNLTLEKKEALLKEKGQIEHDFDVLKK--KTPTDLWEEDLLDLEKTLDKIQDDF 1170


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/642 (17%), Positives = 228/642 (35%), Gaps = 77/642 (11%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 +  IT + I+D +   ++ ++++  + R+IP + DG KP  R++L+G  +  +  
Sbjct: 719  PGTHLDPEITEIPISDFINKEFILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
              K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 778  EIKVAQLAGYVSENTGYHH--GEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGK 835

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              +A RY    L +    + + L      +  + D    EP       P +LVNG  GI 
Sbjct: 836  DFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIG 894

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +TNIP++N  ++V     +++      + L E+   P +      L   G +    +
Sbjct: 895  TGWSTNIPSYNPKDLVTNIRRLMNG-----EELQEM--TPWYKGWGGDLEPMGPQKFKVS 947

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            GR          IE+   D   + +TEIP +     + E +      ++        +E 
Sbjct: 948  GR----------IEQI--DSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH 995

Query: 304  DRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                 R V++L        +   L   ++  S  SL ++      G   +   ++ I+K 
Sbjct: 996  HTTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKD 1055

Query: 361  FVAFREEVVVRRTKYLLNKARDRA------------HVLVGLAIAVANLDEVVRI----- 403
            F   R E   +R  Y+ +  +++              +   L++A     ++V +     
Sbjct: 1056 FYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEHN 1115

Query: 404  -IRFSPNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT------ 454
              +FS + +  +   EL+       + +      D+                Q       
Sbjct: 1116 FTKFSKDGKPIKSSEELLTGDDADEEEETQEQEGDEDVGNTSVANIQEGEPEQAAHVPET 1175

Query: 455  -----RAILELRLARLTGLGRDDI-------RNELNSLGIEIK------ECLDILSSRSR 496
                   +L + +  LT      I         ELN+L  +        +  + L+   +
Sbjct: 1176 IYSSYDYLLGMAIWSLTYERFMRIMQQRDQKEAELNALLSKSAKDLWNQDLDEFLAEFDK 1235

Query: 497  LL---GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             L      ++ L S   +  T RR +         ++   V      + S    VK+   
Sbjct: 1236 FLLRDEQERESLASNGKKKSTKRRAKATATKDQPNNKKVKVEPKEKKSTSAKPIVKKEAS 1295

Query: 554  SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            +  +A           ++      +     +T  S    S+ 
Sbjct: 1296 NEPQASSSSKPKEKDDILSFFSSSSSSAKKTTKPSGRATSNK 1337


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 96/517 (18%), Positives = 200/517 (38%), Gaps = 45/517 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  TD +    + ++I     R+IP + DG KP  R++LFG ++  +       
Sbjct: 654  DHSIKKLRYTDFINKELIQFSIY-DTERSIPSVVDGWKPGQRKVLFGCLKRNLV---GEC 709

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G V     + HG A++   +  MAQ++  S  + ++E  G FGS    G   +A
Sbjct: 710  KVAQLTGYVAEHSAYHHGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKDASA 769

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L      +  +   + ++++ N +G   EP+      P VLVNG  GI  G +
Sbjct: 770  ARYIFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGIGTGFS 828

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            + IP +N  +++D     ++N D+           P  P      G           +G 
Sbjct: 829  SQIPNYNPLDIIDNLKRYLNNVDMK----------PMVPWYHKFTG-----EIEPNDKGG 873

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                G       +G    + +TE+P   +  +    LE + + V   +   I    D S 
Sbjct: 874  FDCLGNYQWLDENG---LLEITELPIRKWTHDYRVFLESLEQGVN-GKEPLILGFVDNST 929

Query: 305  RQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
             +     + +      +VI   ++++++  +  +  ++ +   N         + I++ F
Sbjct: 930  HESVHFTLNVNPECIEEVINEGVDKVFKLRTSIATTNMTLFDANKKLKRYSNELEIIRDF 989

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R     +R  YL+N  +     +      +  +     ++ F     T   EL    
Sbjct: 990  AAVRLATYEKRKTYLINNLKLLLRRISNQVRFIHMVVNE-ELVLFKKAKATLVAELRDLG 1048

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ------TRAILELRLARLTGLGRDDIRN 475
            ++++   D++   ++ S           S  Q         +L + L  LT      +  
Sbjct: 1049 FDSN--TDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTLEQVQKLNE 1106

Query: 476  ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            E      +++  L+  ++    +  + +  +++K   
Sbjct: 1107 EHAQKENQLRILLETTAT-DMWMDDLNKVEVAIKMAY 1142


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 177/496 (35%), Gaps = 41/496 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + I D +    + +++     R+IP + DGLKP  R++++   +  +    K  + A  
Sbjct: 722  QIPIDDFINRELIQFSM-ADNIRSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGY 780

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTEC 133
                    + HG  ++   +  +AQ++  S  + L+   G FG  S  G   +A RY   
Sbjct: 781  V--ASETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNT 838

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
             L   A  L +      ++++ N +G + EP       P VLVNG  GI  G +T IP +
Sbjct: 839  ALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNY 897

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            N  ++      +++   +++                   G  G     A  R  I     
Sbjct: 898  NPKDITANLRHMLNGEPLEI-------------MTPWYRGFRGSITKVAPDRYKISG--- 941

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKI-AELVREKRI-VDIADLRDESDRQGYRVV 311
                       ++ +TE+P +     M E + A LV  ++I   I D             
Sbjct: 942  ---IINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEGNVHFN 998

Query: 312  IELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + L      + +   L   ++ +  Q+  ++     +G   +  ++  IL  F   R   
Sbjct: 999  VTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEVRLRT 1058

Query: 369  VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
              RR ++++N+   R       A  +  + E   ++      +    EL ++ +      
Sbjct: 1059 YQRRKEHMVNELEKRFDRFSNQARFIHMIIEG-ELVVSKKKKKDLIVELKEKKFQPISKP 1117

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTR------AILELRLARLTGLGRDDIRNELNSLGI 482
                L+D       ++        Q         +L + L  LT     ++  + + +  
Sbjct: 1118 KKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKKDEVMA 1177

Query: 483  EIKECLDILSSRSRLL 498
            E+     I  +   L 
Sbjct: 1178 ELDAL--IKKTPKELW 1191


>gi|37999018|dbj|BAD00079.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 176

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 92/176 (52%), Positives = 123/176 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 176


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 203/547 (37%), Gaps = 63/547 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  +T + I+D +    + +++     R+IP + DG KP  R++L+G  +  +
Sbjct: 724  FQPGTHLDPNLTEIPISDFINQELILFSM-ADNVRSIPSVLDGFKPGQRKVLYGCFKRNL 782

Query: 66   EWNKKYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
               K  +K A++SG V  K  + HG  ++   +  +AQ++  S  + L++  G FG+   
Sbjct: 783  ---KSEIKVAQLSGYVSEKTGYHHGEQSLVQTIIGLAQNFVGSNNINLLKPNGAFGTRAA 839

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   +A RY    + K    + + L      +  + D    EP       P +LVNG  
Sbjct: 840  GGKDFSAARYIFTEISKITRAIFNPLDDPIYTYVQD-DEQSVEPEWYLPVIPMLLVNGSE 898

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +TNIP++N  ++VD    +++               P         G  G    
Sbjct: 899  GIGTGWSTNIPSYNPLDLVDNIRRLMNGE-------------PMEEMKPWFKGWEGTIEP 945

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
                +  +V +          D   + +TEIP +     + E +   +  ++        
Sbjct: 946  NGPDKYKVVGK------IDQIDETTVEITEIPVKTWTNNVKEFLLAGLGNEKTPAWIKDM 999

Query: 301  DESDRQGYRVVIELKRGASADVILNQLY-RYTSLQSLFSVNMVALN--GYKPERFTLIGI 357
            +E      R V+++     A  +   L  ++  + S+   NMVA +  G      +   I
Sbjct: 1000 EEQHGLNIRFVVKMSPDEMAKALKVGLLEKFKLISSISMSNMVAFDPLGRIKRYSSAQEI 1059

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL---------DEVVRIIRFSP 408
            L+ +   R E   +R  +++++ +++       A  V  +          + V +++   
Sbjct: 1060 LRDYYYVRLEYYQKRKDFMMDELQNQLTKFSEQARFVKMIIDKQLSVSNKKRVDLVKTLE 1119

Query: 409  NPETAR----RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---------- 454
            + +  +     + +  + N S      + I+++   +G    + +  +Q           
Sbjct: 1120 DLKFVKFNKNNKPVSETGNDSLFLAAEEDIEEAEAEVGDVSQLLIGGIQVGNEDNEHKPE 1179

Query: 455  ------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
                    +L + +  LT    + +  + +    E+ + L    S   L        +  
Sbjct: 1180 TIYSHYDYLLGMSIWSLTRERYEKLLQQKDEKEHELNDLLK--KSAKDLWNYDLDVFVEE 1237

Query: 509  KDELDTP 515
             ++    
Sbjct: 1238 WEKFLDA 1244


>gi|62184673|ref|YP_219458.1| DNA topoisomerase IV subunit A [Chlamydophila abortus S26/3]
 gi|62147740|emb|CAH63484.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila abortus S26/3]
          Length = 479

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 125/505 (24%), Positives = 216/505 (42%), Gaps = 47/505 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+    +    + K  K A I+G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWT---LFCMDDGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +    + +  LI+ QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKGYLIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++N    L         PDF +G V+       + Y  G GSI +R       
Sbjct: 173 IEAQIAILNNRAFTL--------LPDFYSGGVM-----DASEYQDGLGSITMRASIQ--- 216

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + D++ +++ EI        ++  I    +   I    D   +       + I+L +G 
Sbjct: 217 -TVDQKTLIIKEICPSTTTETLIRSIENAAKRGVIKI--DSIQDFSTDQPHIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  I+  L++YT  Q + +    A+   KP   ++  ILK      E          L 
Sbjct: 274 YAKDIIEPLFQYTECQVVLTSRPTAIYNNKPVETSISEILKLHTEVLEGY--------LQ 325

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  +     +       +L+ +    R          +L            ++  +    
Sbjct: 326 KELEILQDELAQEHYYKSLEYIFIKYRLYDTVRANLSKLKNTVSQEDLHAAVLTALAPFL 385

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            ++ +      S+  T  +  L + ++     +    +L ++  +       LS+   + 
Sbjct: 386 SSLPTIP----SKQATGQLASLAIKKILCFNENRYTKDLAAIEKKQAAVNKDLSN---MK 438

Query: 499 GIIKQELLSVKDELD--TPRRTRIV 521
               + L  +  +      R+T+++
Sbjct: 439 KFTIKYLKGLSAKYGELGKRKTQVL 463


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 103/550 (18%), Positives = 197/550 (35%), Gaps = 63/550 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   +K   +VS  D +    + ++ N    R+IP L DGLKP  R++LF   +
Sbjct: 727  EQGLTEEYLYDKDTRAVSFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTCFK 785

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G A++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 786  RADKKEVKVAQLAGAVGEMSAYHH--GEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTR 843

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   + ++ + F    +   +         P VLVNG
Sbjct: 844  LQGGKDSASPRYIFTQLNPVTRALFPAVDENVLRFLFEENQRIEPEWYCP-IIPTVLVNG 902

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI    +T IP +N  E+VD    +I   +            P  P      G     
Sbjct: 903  AEGIGTAWSTKIPNYNPREIVDNMRRLIRGEE----------PKPLIPWFKNFRGTIEKL 952

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
            +           R +   E      + I +TE+P +       E + E +    +K+   
Sbjct: 953  D---------ESRYICSGEIALLGDDTIEITELPIRTWTQNYKESVLESMLEGSDKQPPL 1003

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERF 352
            I D ++       + V+++      +  +  L++   LQ+  +++ + L    G      
Sbjct: 1004 IQDFKEYHTDTTVKFVVKMNPAKLREAKMEGLHKIFKLQTAINISSMVLFDPLGCLRRFS 1063

Query: 353  TLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVANLDEVV 401
             +  I K F   R++  + R  +           L N+AR     + G  +       V+
Sbjct: 1064 NVEEICKEFFEIRKKKYIERKAFQEGMLRAQSERLSNQARFILEKIKGEILIENKRKAVI 1123

Query: 402  RI----IRFSPNPETARRELMQRSW----------NASDIKDLIDLIDDSSYTIGSDGTM 447
                    F P+P    +EL ++            +     +  +  + S   +  D   
Sbjct: 1124 VEQLVKKGFDPDPVKKWKELQRKRELEMTGEXQVDDEEMEGEEEEESESSVSPMKKDLEK 1183

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELN-SLGIEIKECLDILSS--RSRLLGIIKQE 504
             LS+     ++ + + +L+   +D + ++    L       L   S      L   + + 
Sbjct: 1184 KLSDY--DYLVGMAILKLSEEEKDKLLHDSELKLEELKALELKTWSDLWEEDLNNFLVEL 1241

Query: 505  LLSVKDELDT 514
                  E   
Sbjct: 1242 EKQEAKERAD 1251


>gi|213161597|ref|ZP_03347307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 152

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 120/147 (81%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 126 RLAKIAHGLMADLEKETVDFVDNYDGT 152


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 177/496 (35%), Gaps = 41/496 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + I D +    + +++     R+IP + DGLKP  R++++   +  +    K  + A  
Sbjct: 668  QIPIDDFINRELIQFSM-ADNIRSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGY 726

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTEC 133
                    + HG  ++   +  +AQ++  S  + L+   G FG  S  G   +A RY   
Sbjct: 727  V--ASETAYHHGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNT 784

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
             L   A  L +      ++++ N +G + EP       P VLVNG  GI  G +T IP +
Sbjct: 785  ALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNY 843

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            N  ++      +++   +++                   G  G     A  R  I     
Sbjct: 844  NPKDITANLRHMLNGEPLEI-------------MTPWYRGFRGSITKVAPDRYKISG--- 887

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKI-AELVREKRI-VDIADLRDESDRQGYRVV 311
                       ++ +TE+P +     M E + A LV  ++I   I D             
Sbjct: 888  ---IINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEGIVHFN 944

Query: 312  IELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + L      + +   L   ++ +  Q+  ++     +G   +  ++  IL  F   R   
Sbjct: 945  VTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEVRLRT 1004

Query: 369  VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
              RR ++++N+   R       A  +  + E   ++      +    EL ++ +      
Sbjct: 1005 YQRRKEHMVNELEKRFDRFSNQARFIHMIIEG-ELVVSKKKKKDLIVELKEKKFQPISKP 1063

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTR------AILELRLARLTGLGRDDIRNELNSLGI 482
                L+D       ++        Q         +L + L  LT     ++  + + +  
Sbjct: 1064 KKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKKDEVMA 1123

Query: 483  EIKECLDILSSRSRLL 498
            E+     I  +   L 
Sbjct: 1124 ELDAL--IKKTPKELW 1137


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 177/495 (35%), Gaps = 46/495 (9%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   +++  D +    + ++ N+   R+IP L DGLKP  R++L+   +     +K+ +K
Sbjct: 694  KETKNITYEDFVNKELILFS-NMDNERSIPSLVDGLKPGQRKVLYTCFKRN---DKREIK 749

Query: 74   CARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
             A+++G V     + HG  ++   +  +AQD+  S  + L+   G FG+    G   A+ 
Sbjct: 750  VAQLAGSVAEHSAYHHGEMSLMSTIIGLAQDFVGSNNINLLLPIGQFGTRLQGGKDAASP 809

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L   A  ++  L    ++   + D    EP       P VLVNG  GI  G +T
Sbjct: 810  RYIFTMLSPLARLIVPALDDPVLNHLYD-DNQKIEPEFYMPILPMVLVNGAEGIGTGWST 868

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             +P ++  EVV     +I   +            P  P      G               
Sbjct: 869  KVPNYDPREVVANLRRMIAGDE----------PKPMKPWFKNFKGTVDQVE--------- 909

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
              R V   E        I +TE+P +       E + E +    EK    I D ++    
Sbjct: 910  EQRFVVSGEVALLSSNSIEITELPVRTWTQNYKENVLETMLHGTEKVPPMITDYKEYHTD 969

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFV 362
               R V+ +     +      L++   LQ+    + + L   K    T      I++ F 
Sbjct: 970  TTVRFVVTMSEDKLSKAQDEGLHKVFKLQTTLCTSSMVLFNSKGVLTTFRNSTEIMQDFY 1029

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNPETARRELMQR- 420
              R E   +R  Y+L      A  L   A   +  +D V++I       +     L +R 
Sbjct: 1030 ETRLEGYKKRKAYMLGLLTAEAKRLENQARFILEKIDNVIKIENRK--RKEMILTLRERG 1087

Query: 421  -------SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                    W     +   D           D            +L + L  LT   ++D+
Sbjct: 1088 YDPDPLLEWKKQQAQSEDDGESQEDDEDEEDKDKDGGSTGYNYLLGMPLWSLTRERKEDL 1147

Query: 474  RNELNSLGIEIKECL 488
              + +    E++   
Sbjct: 1148 LAKRDQKKGELESLQ 1162


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 117/634 (18%), Positives = 235/634 (37%), Gaps = 51/634 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            SV+  D +    + ++ +    R++P + DGLK   R++LF  M+  +    K  + A  
Sbjct: 665  SVTYQDFVNRELIQFS-HADNQRSLPSVVDGLKISQRKVLFACMKRKLTSEVKVAQLAGY 723

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
              E    +H  G A+++  +  MAQD+  S  L L+   G FG+    G   A+ RY   
Sbjct: 724  CSEHTAYHH--GEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIFT 781

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
             LQK    +  +     + +  + DG   EPV      P +LVNG  GI  G +++IP H
Sbjct: 782  LLQKHTRLVFPEEDDALLRYADD-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCH 840

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            +   V+D  + ++D  +   D  + I+            G +G  +   TG+ S V RG 
Sbjct: 841  HPVLVIDNLLKLLDAEEAGDD--LSIVELSL--MTPWAKGFSG--DIRQTGKHSFVSRG- 893

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             ++E+ +     + VTE+P         + + +LV +K I   ++   E D    R  I 
Sbjct: 894  -NVEQVNTS--TVRVTELPVGKWVEDYKKFLWDLVGKKAIRSFSEHHSERD---VRFDIS 947

Query: 314  LKRGASAD--------------VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            + R   A                 L +L R  +  S  +++    +G   +  T   +L+
Sbjct: 948  MTRSDLAKYAEDAAENCDAGDSEALVKLLRLEAPLSTSNMHAFNADGQLVKYETSEDVLR 1007

Query: 360  AFVAFREEVVVRRTKYLL-NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F   R ++  +R ++L   + ++   +   +          ++ I     P+    +L+
Sbjct: 1008 DFYGVRRKLYSKRKRHLEQRQTKEVLRLSNRIRFIQEVSTGSLQKILRERIPKAELIDLL 1067

Query: 419  QRSWNASDIKDLIDLIDD--------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            +    A       + ID              G  G +  SE     +L   L   T    
Sbjct: 1068 KEHGFAPASAFKEEAIDHMGDLGLAAVGREQGKAGDLDGSED-YDYLLNTSLMSFTKEFA 1126

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
            D +R E ++   ++++     ++ ++L     + L +V           +     D    
Sbjct: 1127 DRLRKEHDTKQDKLQQLQA--TTPAQLWRNELERLRAVLSHFLNENSATLKRPASDAFGA 1184

Query: 531  DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                  ++V+   +   ++     +  +++  G       +   D +     + T     
Sbjct: 1185 MAKHGAEVVIVPRNFKLLE----ELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPA 1240

Query: 591  FFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                 G +Y  ++                + +++
Sbjct: 1241 GTCHDGRIYSLRIHCSDQYPHVPPEVHFTSRINM 1274


>gi|37999014|dbj|BAD00077.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 176

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 122/174 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 95/495 (19%), Positives = 187/495 (37%), Gaps = 43/495 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + ++    + R+IP++ DGLKP  R++LF   +     +K+ V
Sbjct: 680  EKDTRAVSFSDFINVELVLFSNYDNI-RSIPNMMDGLKPGQRKVLFTCFKRN---DKREV 735

Query: 73   KCARI-SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A++ +       + HG  ++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 736  KVAQLGASVAEHSAYHHGEMSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSAS 795

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L   A ++        +      D    EP       P VLVNG  GI  G  
Sbjct: 796  PRYIFTMLSPLARYIFHKHDDPLLK-HEYDDNQKIEPTYYVPIIPMVLVNGADGIGTGWM 854

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  E+++    ++D  D            P  P      G       Y      
Sbjct: 855  TKIPNYNPREIIENLQRMMDGAD----------PRPMSPFYKNFKGTIESCGDY------ 898

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESD 304
               R V   E +    +++ +TE+P      A  E + E +    +K    I D ++ + 
Sbjct: 899  ---RYVISGEISIIGPDKVEITELPIGTWTQAYKETVLEPMLHGSDKTPPVITDYKEYNT 955

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKAF 361
                  V+ L+R   A++  + L++   LQ+  S+  +          +   +  I++ F
Sbjct: 956  DTMVHFVVTLQRDKLAELERDGLHKAFKLQTTTSITSMCAFDDNLCLKKFDNVCQIMRTF 1015

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R ++  +R  YL    +  +  L   +  +    +    I      +    EL++R 
Sbjct: 1016 FTVRLDLYQKRKDYLEGILQAESAKLSNQSRFIMEKCDGTLTIENKK-KKDMIAELVRRG 1074

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-------RAILELRLARLTGLGRDDIR 474
            +++  +       +     +  +     S             +L + +  LT   +D++ 
Sbjct: 1075 YDSDPVVAWKLAQNREEEEVAENEDDEASTSAVVVEKENFDYLLGMTMWSLTKEKKDELL 1134

Query: 475  NELNSLGIEIKECLD 489
             + +    E+     
Sbjct: 1135 KQRDEKLAELHRLQA 1149


>gi|320089090|emb|CBY98845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 231

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 131/259 (50%), Gaps = 56/259 (21%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF 
Sbjct: 1   MATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             A+R    R + GVRGI LA  D+V+S+                               
Sbjct: 61  EDAVRAMG-RTATGVRGIKLAGDDKVVSLI------------------------------ 89

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                  +   E  ILTV++ G+GKRT++ ++   +R+ +G+ +
Sbjct: 90  -----------------------IPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVIS 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             V++ N  G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE
Sbjct: 127 IKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDE 184

Query: 890 RVVSVERIRESEIVDEAES 908
            VV ++R+ E    +E ++
Sbjct: 185 NVVGLQRVAEPVDDEELDA 203



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 15/210 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R    G   V + D D +  + + S    V+ FS+ G V + K
Sbjct: 3   TASGTVKKTALTEFSRPRSA--GIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK 60

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L   +++ +++  P  E +     ++  T++G  +R   
Sbjct: 61  EDAVRAMGRTATG---VRGIKLAGDDKVVSLI-IPRGEGA-----ILTVTQNGYGKRTAA 111

Query: 663 SDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   +R+  G I++K+      ++        + I++ T  G  VR  +S I V   R
Sbjct: 112 DEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVG-R 170

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYD 749
           N+ GV  I  A+ + V+ +  V     D +
Sbjct: 171 NTQGVILIRTAEDENVVGLQRVAEPVDDEE 200


>gi|21732251|emb|CAD37174.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732253|emb|CAD37175.2| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 174/497 (35%), Gaps = 43/497 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +    +++ ++ +    + +++     R+IP + DG KP  R++LF   +  ++   K  
Sbjct: 691  DHQTEAITYSEFINKELILFSM-ADNVRSIPSVVDGFKPSQRKVLFACFKRNLKDEIKVA 749

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAE 128
            + A    E    +H  G  ++   +  MAQ++    ++ LLL  GQ       G   A+ 
Sbjct: 750  QLAGYVAEHSAYHH--GEVSLAGTIVNMAQNYTGSNNINLLLPLGQFGTRLQGGKDAASA 807

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L      +        +++    DG   EP       P  L+NG  GI  G ++
Sbjct: 808  RYIFTKLATLTRLIFPANDDSLLNYLDE-DGQRIEPEWYMPILPLSLINGCEGIGTGWSS 866

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            ++P  +  +VV                LM   + P+ P      G TG            
Sbjct: 867  SVPNFSPRDVVANIR------------LMMAGQDPE-PMCPYYNGFTGTIEPLGKADRFR 913

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM---LEKIAELVREKRIVD-IADLRDESD 304
            V   ++ +  T      + +TE+P  V   +    LEK+ E   + +    I D R+   
Sbjct: 914  VCGRITKLSAT-----TLEITELPIGVWTQSYKEELEKLMEPNEKDKTPGFIKDFRENHT 968

Query: 305  RQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
                   + L     A      L   ++  S  S  ++      G   +  +   IL+ F
Sbjct: 969  DTSVHFTVTLSEENMAAAEAMGLAKKFKIDSTISTANMVFFDAEGRIKKYDSPQAILRDF 1028

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R +   +R  +L+ +  +    L      +  + +   +I          R+L  R 
Sbjct: 1029 YDLRLKYYQKRKSWLVERLTEEWTRLDNKVRFIQAVIKGDLVISNRK-RADLMRDLKTRG 1087

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI---------LELRLARLTGLGRDD 472
            + A         I  +     + G    ++  +  I         L + L  LT      
Sbjct: 1088 YTAFSTSTKKIKIAGAIDADDNGGADETADNDSDDIVHTNGYDYLLTMPLWSLTLEKVQQ 1147

Query: 473  IRNELNSLGIEIKECLD 489
            +  E +    E+K  L+
Sbjct: 1148 LLGERSVKEEELKVLLE 1164


>gi|192382714|gb|ACF04378.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYHTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/512 (17%), Positives = 183/512 (35%), Gaps = 37/512 (7%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +   ++ + S+S  D +    + ++      R+IP + DGLKP  R++L+  ++  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
               K  + + +  E    +H  G  ++   +  MAQ++  S  +  +   G FGS    G
Sbjct: 701  KELKVSQLSGLVSEKSSYHH--GEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGG 758

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               AA RY   RL   + +L        +++  + D    EP   C   P VLVNG  GI
Sbjct: 759  KDQAAARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGADGI 817

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T +  +N  ++VD C   ++  +            P F      L +    + Y 
Sbjct: 818  GTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMK-------PWFRGWTGQLRKNKDGSGY- 869

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
               G         IE          +TE+P Q+      + + + +  K +   ++    
Sbjct: 870  DCYGKWRRLADDKIE----------ITELPIQIWTDTYKQHLEKCIEAKIVKGYSEYHMV 919

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            +       VI+L +  S + I   L +  S     ++++        +  T++ IL  F 
Sbjct: 920  NT---VHFVIDLVQPMSDEDIWTNL-KLVSSVKTTNMHLFNSEYKITKYHTVLDILAEFC 975

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR--ELMQR 420
              R +    R K ++     +  +L      +  + E   II      E  +   +L   
Sbjct: 976  DVRMKGYEERKKAIIESMERQLMILSNKVRFIKMVIEGDLIINNRKKNELYKDLIKLGFD 1035

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                    +    I +S      +            +L +++  LT      +  + + L
Sbjct: 1036 QIRDPKKANKSKPIGESEDAEIKEEDDDDEVGGYDYLLGMKIWTLTYEKAKKLMEDCDDL 1095

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
              +I            +  +  ++L +   + 
Sbjct: 1096 KTQIDTVKTTP-----VKDMWLKDLDAFVKKY 1122


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/501 (21%), Positives = 182/501 (36%), Gaps = 46/501 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   +S+S +D +    + ++      R+IP L DG KP  R++LF  ++  ++   K  
Sbjct: 769  DHNASSLSYSDFVNKELILFSRY-DTERSIPQLVDGWKPGQRKVLFACIKKNMKHELKVA 827

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    EV   +H  G A++   +  MAQ +  S  L  +E  G FGS    G   +A 
Sbjct: 828  QLAGYVSEVSAYHH--GEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAA 885

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL      +  +     +++    +G   EP +     P VL+NG  GI  G ++
Sbjct: 886  RYIFTRLAFYTRLVFHEADDPILEY-EYEEGQRIEPKMYVPVIPTVLINGSEGIGTGWSS 944

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             +P +N  +V++     ID  ++                     G  G     A G G  
Sbjct: 945  FVPNYNPRDVIENLRRYIDGEEMQR-------------MTPWYRGFRGRIEENAAGTGFE 991

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQ 306
             I  V          +   +TE+P +       E + E     EKR   IAD RD S  +
Sbjct: 992  TIGLVRRC-----GEDTYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHE 1046

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVA 363
                 +++            L +Y  L+S  S+  + L   +G        + I+K F  
Sbjct: 1047 EIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKEFAP 1106

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R E   RR  Y L        +L      +  +     II              Q    
Sbjct: 1107 IRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKRKKALIEELFSQGYDP 1166

Query: 424  ASDIKDLIDL-----------IDDSSYTIGSDGTM----YLSEVQTRAILELRLARLTGL 468
              +I+D  +            +DD +   G +         +      +L + +  LT  
Sbjct: 1167 MKEIEDAANAGIRAALKRDVTVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWSLTLE 1226

Query: 469  GRDDIRNELNSLGIEIKECLD 489
              +D+R E+    +E++E   
Sbjct: 1227 KVEDLRGEMRQKELELEELRH 1247


>gi|192382582|gb|ACF04312.1| GyrA [Neisseria gonorrhoeae]
 gi|192382584|gb|ACF04313.1| GyrA [Neisseria gonorrhoeae]
 gi|192382586|gb|ACF04314.1| GyrA [Neisseria gonorrhoeae]
 gi|192382588|gb|ACF04315.1| GyrA [Neisseria gonorrhoeae]
 gi|192382590|gb|ACF04316.1| GyrA [Neisseria gonorrhoeae]
 gi|192382592|gb|ACF04317.1| GyrA [Neisseria gonorrhoeae]
 gi|192382594|gb|ACF04318.1| GyrA [Neisseria gonorrhoeae]
 gi|192382596|gb|ACF04319.1| GyrA [Neisseria gonorrhoeae]
 gi|192382598|gb|ACF04320.1| GyrA [Neisseria gonorrhoeae]
 gi|192382600|gb|ACF04321.1| GyrA [Neisseria gonorrhoeae]
 gi|192382602|gb|ACF04322.1| GyrA [Neisseria gonorrhoeae]
 gi|192382606|gb|ACF04324.1| GyrA [Neisseria gonorrhoeae]
 gi|192382608|gb|ACF04325.1| GyrA [Neisseria gonorrhoeae]
 gi|192382610|gb|ACF04326.1| GyrA [Neisseria gonorrhoeae]
 gi|192382612|gb|ACF04327.1| GyrA [Neisseria gonorrhoeae]
 gi|192382614|gb|ACF04328.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|37999024|dbj|BAD00082.1| DNA topoisomerase IV subunit C [Streptococcus porcinus]
          Length = 176

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + + 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A YPN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 175


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/502 (19%), Positives = 177/502 (35%), Gaps = 39/502 (7%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +   + +   D +    + ++I   + R+IP + DGLKP  R+ILF   +   
Sbjct: 672  FEPGTFLDDRDSHIKYRDFVHKELILFSI-ADVQRSIPSMVDGLKPGQRKILFCSFKRNF 730

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
                K  + +    E    +H  G  ++   +  MAQD+  S  + L+   G FG+    
Sbjct: 731  VREAKVAQFSGYVSEHSAYHH--GEQSLAGTIIGMAQDYVGSNNINLLLPIGQFGTRGQG 788

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L     FL        +D+  N DG   EP       P VLVNG  G
Sbjct: 789  GKDHASARYVFTQLSPVTRFLFPKADDILLDYL-NEDGQSIEPTWYVPIIPMVLVNGSEG 847

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G ++ +P +N  +++     ++++   +             P      G  G     
Sbjct: 848  IGTGWSSYVPNYNPVDIIANIRHLLNDEATE-------------PMHPWYKGFLGSVEKT 894

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIAD 298
            AT            IE+   D   + + E+P   +  +    LE ++    + +   I  
Sbjct: 895  ATKEAGASYTVSGIIEEV--DDTTLCIKELPIRRWTQDYKEFLESVSAENDKSKDPFIEG 952

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLI 355
             RD S  +    ++ +K           L +   L +  S   + L   K    +  T  
Sbjct: 953  CRDYSGSELVNFLVGMKPEKLEAAKREGLLKKFKLTTSISTCNMHLFDSKGVIKKYDTPE 1012

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL+ F   R E+  +R K LL+               +  + E   I+          R
Sbjct: 1013 QILEEFFYIRLELYEKRKKVLLDILEHDMLKCDNKYRFIRCVVEGSIIVSNRK-RTDVFR 1071

Query: 416  ELMQRSWNA---------SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
            EL ++ +             I    D  +++           +S      +L L +  LT
Sbjct: 1072 ELKEKGFTPFPKKKNRAEVAIAGATDDGEETEENSEVPIAPGVSSSDYDYLLSLAIGTLT 1131

Query: 467  GLGRDDIRNELNSLGIEIKECL 488
                 ++R E + L  E++E  
Sbjct: 1132 TEKMQELRAERDKLMQEVEELK 1153


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 187/513 (36%), Gaps = 39/513 (7%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +   ++ + S+S  D +    + ++      R+IP + DGLKP  R++L+  ++  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
               K  + + +  E    +H  G  ++   +  MAQ++  S  +  +   G FGS    G
Sbjct: 701  KELKVSQLSGLVSEKSSYHH--GEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGG 758

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               AA RY   RL   + +L        +++  + D    EP       P VLVNG  GI
Sbjct: 759  KDQAAARYIYTRLSSISRYLCPKDDDQILEYLIDED-RRIEPKYYFPIIPTVLVNGADGI 817

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T +  +N  ++VD C   ++  +            P F      L +    + Y 
Sbjct: 818  GTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMK-------PWFRGWTGQLRKNKDGSGY- 869

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
               G         IE          +TE+P Q+   +  + + + +  K +   ++    
Sbjct: 870  DCYGKWRRLSEDKIE----------ITELPIQIWTDSYKQHLEKCIEAKIVKGYSEYHMV 919

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            +       VI+L +  S + I   L +  S     ++++        +  T++ IL  F 
Sbjct: 920  NT---VHFVIDLVQPMSDEDIWTNL-KLVSSVKTTNMHLFNSEYKITKYHTVLDILSEFC 975

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              R +    R K ++     +  +L   A  +  + E   I+          ++L++  +
Sbjct: 976  DVRMKGYEERKKAIIESMERQLMILSNKARFIKMVIEGELIVNNRK-KNELYKDLIKFGF 1034

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNS 479
            +        +       +   +      + +      +L +++  LT      +  + + 
Sbjct: 1035 DQIRDPKKANKSKPIGESEDDEIKEEEEDDEVGGYDYLLSMKIWTLTYEKAKKLMEDCDD 1094

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            L  +I            +  +  ++L +   + 
Sbjct: 1095 LKTQIDTIKTTP-----VKDMWLKDLDAFVKKY 1122


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/587 (17%), Positives = 207/587 (35%), Gaps = 74/587 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 753  DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 808

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
            K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 809  KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 868

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    +      L        +  R   D    EP       P VLVNG  GI  G +
Sbjct: 869  PRYIYTEIAPLTRLLCRPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGWS 927

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP +N  ++V     +++  ++              P      G  G     A  +  
Sbjct: 928  TTIPCYNPVDIVANIRRLMNGEEV-------------VPMLPWWRGFKGEVKMVAKHKYD 974

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +             +   + +TE+P          ++  ++ EK    + D ++  D   
Sbjct: 975  VTGIAK------KLNDTTVEITELPIYKWTQNFKAELEGMIGEKGDGVVKDYKEYHDNLN 1028

Query: 308  YRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               V+ +            L   ++ T+  +  ++     +G   +  +   IL+ F   
Sbjct: 1029 VHYVVTMPAKELEKAEQQGLIEFFKLTTKINTSNMMCFDFDGKMKKYDSPEEILEEFYPV 1088

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVAN---------------LDEVVRIIRFSPN 409
            R     +R  +L N+ +     L   A  +                 + + +R  +F P 
Sbjct: 1089 RLAYYQKRKDFLANELQTVFERLSNQARFIQMIVDKQLSVSNRKKADIIQDLRKHQFRPF 1148

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            P+ ++ +       A ++++++D  D+ +      G+   S      +L + +  LT   
Sbjct: 1149 PKISKAK------AAGELEEVVDGADEPAEEEEETGSGD-SATDFDYLLGMAIYSLTKEK 1201

Query: 470  RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
               +R + N   +E+   L+     S +            D         + E      +
Sbjct: 1202 IGKLRQQANEKELELMALLE--KKPSEMWN-------EDLDRF-------LEEWHSTYNE 1245

Query: 530  EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
                  +D     S     KR  +   R    G   R G    D+DF
Sbjct: 1246 WLSQATKDA----SGKTIKKRQAVLETRKSITGFFRRKGQSDDDDDF 1288


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1432

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/547 (21%), Positives = 195/547 (35%), Gaps = 59/547 (10%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 ++    V+ +D +    + +++   L R+IP + DGLKP  R+ILF   +  V  
Sbjct: 669  PGTHLDQREPKVTYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFTAFKKIVV- 726

Query: 68   NKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
              K +K A++ G V     + HG  ++  A+  MAQD+  S  + L++  G FG+    G
Sbjct: 727  --KEMKVAQLVGYVSSMSAYHHGEQSLASAIIGMAQDYVGSNNINLLQPNGQFGTRNSGG 784

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY    L      L        +D+  N DG   EP       P VLVNG  GI
Sbjct: 785  KDAASARYIFTILSPVTRILFPKDDHILLDYL-NEDGQSIEPTWYMPIIPTVLVNGSEGI 843

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  E+V      ++   +              P      G  G     A
Sbjct: 844  GTGWSTFIPNYNPREIVANVRCRLNGESM-------------VPMDPWYRGFKGTIEKTA 890

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +  G          E+   D   I +TE+P +       + +  L  +       D++  
Sbjct: 891  SKEGGCTYTITGLYEEV--DDTTIRITELPIRRWNDDYKQFLQSLKTDNGAPFFQDVKAY 948

Query: 303  SDRQGYRV-VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILK 359
            +D +     +I  +    A      L ++    ++ + NM   +  G   +  T   IL+
Sbjct: 949  NDDKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDRKGVIKKYATPEQILE 1008

Query: 360  AFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LDEVVRII 404
             F   R E   +R + +L           NK R    VL G  I        + E +R  
Sbjct: 1009 EFFELRLEYYEKRKETMLKNLEIELLKLENKVRFILGVLSGEIIVNNRKKADIVEDLRQR 1068

Query: 405  RFSPNPETARR-ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
             F+P P+ A   E           ++  +++ D   +           +   AI  L + 
Sbjct: 1069 GFTPFPKKAESVEAAVAGAVDDAAEESEEILVDPESSSTYIPGSEYDYLLAMAIGSLTIE 1128

Query: 464  RLTGL----GRDDIRNE-----------LNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            ++  L     +  I  E           L  L    KE   +    ++     K     +
Sbjct: 1129 KVQELLADRDKMIIAVEDMKKHTPKSLWLRDLESLDKELDKLDRKDAKAEEERKAAQEKI 1188

Query: 509  KDELDTP 515
            + +   P
Sbjct: 1189 RKKSGAP 1195


>gi|192382604|gb|ACF04323.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 118/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/521 (20%), Positives = 204/521 (39%), Gaps = 55/521 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  ++ +   +K    VS  D +    + ++ N    R+IP L DGLKP  R++LF   +
Sbjct: 176 EDGLTEEYLYDKDTHVVSFKDFVNKELVLFS-NCDNERSIPSLVDGLKPGQRKVLFTCFK 234

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
              +   K  + A   GE+   +H  G A++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 235 RADKKEVKVAQLAGAVGEMSAYHH--GEASLMSTIVNLAQDFVGSNNINLLLPIGQFGTR 292

Query: 120 -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
              G   A+ RY   +L      L   + ++ + F    +    EP   C   P VLVNG
Sbjct: 293 LQGGKDSASPRYIFTQLNPVTKALFPSIDENVLRFLYE-ENQKIEPEWYCPVIPTVLVNG 351

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GI    +T +P +N  E+VD   A+ID  +                      G+    
Sbjct: 352 TEGIGTAWSTKVPCYNPREIVDNMRALIDGKE------------------PKTFGKKNSI 393

Query: 239 NAYATGRGSIV----IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REK 291
             Y   RG+I      R + + E    + E I +TE+P +       E +   +    +K
Sbjct: 394 PWYKHFRGTIEQLDDQRFICNGEVAIINNETIEITELPIRTWTQTYKEAVLVPMMDGNDK 453

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGA---SADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           +   I D ++       + V+++       S +  L+++++  S+ +  S+ +    GY 
Sbjct: 454 QPAVITDFKEYHTDTTVKFVVKMSSDKLRASKEEGLHKVFKLQSVINTTSMVLFDPFGYL 513

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN- 396
                +  I K F   R++  + R  +           L N+AR     + G  +     
Sbjct: 514 RRFENVTDICKEFFEIRKKKYIERKSFQEGLLRAQSERLSNQARFILAKIKGEILIENKR 573

Query: 397 ---LDEVVRIIRFSPNPETARRELMQRS--WNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
              + E +  + F P+P    +E  ++       ++    D  +       +  +  L+ 
Sbjct: 574 KATIVEQLIKMSFKPDPVKKWKEERKKQELMMLGEVAQDEDEEEQEENEEDTHQSKELAA 633

Query: 452 VQT--RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             +    ++ + + +L+   +D +  E  +   E+K   ++
Sbjct: 634 KLSDYDYLVGMAILKLSEEEKDKLLKESETKLSELKLLEEM 674


>gi|21732260|emb|CAD37178.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|47420006|gb|AAT27355.1| DNA gyrase A [Campylobacter fetus]
          Length = 267

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/293 (39%), Positives = 179/293 (61%), Gaps = 26/293 (8%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +++RDESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ 
Sbjct: 1   SEVRDESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLE 60

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +LK F+  R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  
Sbjct: 61  LLKLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDG 120

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM +                            LSE+Q+ AIL++RL++LTGL R+ +  E
Sbjct: 121 LMAK--------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAE 154

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  +   I++   IL S + +  II+ ELL +K +   PR T IV+   D++ ED I  E
Sbjct: 155 LKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNE 214

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           +MVVT++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F   +H ++
Sbjct: 215 NMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTL 267


>gi|13272207|gb|AAK15777.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 117/147 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + P +LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/495 (18%), Positives = 180/495 (36%), Gaps = 59/495 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++    +  +D +    + +++   L R+IP + DGLKP  R+ILF   +   
Sbjct: 663  FQPGTYLDQKEKLIKYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNF 721

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
                K  + +    E    +H  G  ++   +  MAQD+    ++ LLL  GQ       
Sbjct: 722  IKEAKIAQFSGYVSEHSAYHH--GEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRHQG 779

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   RL     FL        +D+  N DG   EP       P VLVNG  G
Sbjct: 780  GKDHASARYIYTRLSPITRFLFPKDDDILLDYL-NEDGQSIEPTWYVPTIPMVLVNGSEG 838

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
            I  G +++IP +N  +++     +++        +ME       P      G  G I+  
Sbjct: 839  IGTGWSSSIPNYNPRDIIANVRRLLNG------EMME-------PMDPWYRGFRGTIEKT 885

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIA 297
              T + S+       IE+   +   + ++E+P   +  +    LE I     + +   I 
Sbjct: 886  DPTKQESVGYTVKGIIEEV--NETTLRISELPVRKWTQDYKEFLESIMTGNDKIKDPFIK 943

Query: 298  DLRDESDRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            D ++ +D       + +       +    L Q ++ T+  S  ++++   NG   +  T 
Sbjct: 944  DYKEHNDDTTVHFEVIMSEENLLMAKQEGLLQKFKLTTKISTSNMHLFDSNGTIKKYETP 1003

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              IL+ F   R E       Y   K     ++ + L      +  ++ ++R         
Sbjct: 1004 EQILEEFFHLRLEF------YEKRKRVLLDNLELELLKLENKVRFILGVVRG-------- 1049

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
              ++     A    +L   +  + Y                 +L + +  LT     ++ 
Sbjct: 1050 EIIVSNRKRADLFHELHQKVRATDY---------------EYLLSMAIGTLTLEKVQELC 1094

Query: 475  NELNSLGIEIKECLD 489
             + + L   + +   
Sbjct: 1095 ADRDKLNKGVDDLKK 1109


>gi|192382620|gb|ACF04331.1| GyrA [Neisseria lactamica]
 gi|192382622|gb|ACF04332.1| GyrA [Neisseria lactamica]
 gi|192382630|gb|ACF04336.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELRNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|192382562|gb|ACF04302.1| GyrA [Neisseria meningitidis]
 gi|192382564|gb|ACF04303.1| GyrA [Neisseria meningitidis]
 gi|192382566|gb|ACF04304.1| GyrA [Neisseria meningitidis]
 gi|192382568|gb|ACF04305.1| GyrA [Neisseria meningitidis]
 gi|192382570|gb|ACF04306.1| GyrA [Neisseria meningitidis]
 gi|192382572|gb|ACF04307.1| GyrA [Neisseria meningitidis]
 gi|192382574|gb|ACF04308.1| GyrA [Neisseria meningitidis]
 gi|192382576|gb|ACF04309.1| GyrA [Neisseria meningitidis]
 gi|192382578|gb|ACF04310.1| GyrA [Neisseria meningitidis]
 gi|192382580|gb|ACF04311.1| GyrA [Neisseria meningitidis]
 gi|192382616|gb|ACF04329.1| GyrA [Neisseria meningitidis]
 gi|192382618|gb|ACF04330.1| GyrA [Neisseria lactamica]
 gi|192382624|gb|ACF04333.1| GyrA [Neisseria lactamica]
 gi|192382626|gb|ACF04334.1| GyrA [Neisseria lactamica]
 gi|192382632|gb|ACF04337.1| GyrA [Neisseria lactamica]
 gi|192382634|gb|ACF04338.1| GyrA [Neisseria lactamica]
 gi|192382636|gb|ACF04339.1| GyrA [Neisseria meningitidis]
 gi|192382638|gb|ACF04340.1| GyrA [Neisseria meningitidis]
 gi|192382640|gb|ACF04341.1| GyrA [Neisseria meningitidis]
 gi|192382642|gb|ACF04342.1| GyrA [Neisseria meningitidis]
 gi|192382646|gb|ACF04344.1| GyrA [Neisseria meningitidis]
 gi|192382648|gb|ACF04345.1| GyrA [Neisseria meningitidis]
 gi|192382654|gb|ACF04348.1| GyrA [Neisseria meningitidis]
 gi|192382656|gb|ACF04349.1| GyrA [Neisseria meningitidis]
 gi|192382660|gb|ACF04351.1| GyrA [Neisseria meningitidis]
 gi|192382662|gb|ACF04352.1| GyrA [Neisseria meningitidis]
 gi|192382664|gb|ACF04353.1| GyrA [Neisseria meningitidis]
 gi|192382666|gb|ACF04354.1| GyrA [Neisseria meningitidis]
 gi|192382668|gb|ACF04355.1| GyrA [Neisseria meningitidis]
 gi|192382670|gb|ACF04356.1| GyrA [Neisseria meningitidis]
 gi|192382672|gb|ACF04357.1| GyrA [Neisseria meningitidis]
 gi|192382674|gb|ACF04358.1| GyrA [Neisseria meningitidis]
 gi|192382676|gb|ACF04359.1| GyrA [Neisseria meningitidis]
 gi|192382678|gb|ACF04360.1| GyrA [Neisseria meningitidis]
 gi|192382680|gb|ACF04361.1| GyrA [Neisseria meningitidis]
 gi|192382682|gb|ACF04362.1| GyrA [Neisseria meningitidis]
 gi|192382684|gb|ACF04363.1| GyrA [Neisseria meningitidis]
 gi|192382686|gb|ACF04364.1| GyrA [Neisseria meningitidis]
 gi|192382688|gb|ACF04365.1| GyrA [Neisseria meningitidis]
 gi|192382690|gb|ACF04366.1| GyrA [Neisseria meningitidis]
 gi|192382692|gb|ACF04367.1| GyrA [Neisseria meningitidis]
 gi|192382694|gb|ACF04368.1| GyrA [Neisseria meningitidis]
 gi|192382696|gb|ACF04369.1| GyrA [Neisseria meningitidis]
 gi|192382698|gb|ACF04370.1| GyrA [Neisseria meningitidis]
 gi|192382700|gb|ACF04371.1| GyrA [Neisseria meningitidis]
 gi|192382702|gb|ACF04372.1| GyrA [Neisseria meningitidis]
 gi|192382704|gb|ACF04373.1| GyrA [Neisseria meningitidis]
 gi|192382706|gb|ACF04374.1| GyrA [Neisseria meningitidis]
 gi|192382708|gb|ACF04375.1| GyrA [Neisseria lactamica]
 gi|192382710|gb|ACF04376.1| GyrA [Neisseria meningitidis]
 gi|192382712|gb|ACF04377.1| GyrA [Neisseria meningitidis]
 gi|192382716|gb|ACF04379.1| GyrA [Neisseria lactamica]
 gi|192382718|gb|ACF04380.1| GyrA [Neisseria lactamica]
 gi|192382720|gb|ACF04381.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/501 (21%), Positives = 182/501 (36%), Gaps = 46/501 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   +S+S +D +    + ++      R+IP L DG KP  R++LF  ++  ++   K  
Sbjct: 769  DHNASSLSYSDFVNKELILFSRY-DTERSIPQLVDGWKPGQRKVLFACIKKNMKHELKVA 827

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    EV   +H  G A++   +  MAQ +  S  L  +E  G FGS    G   +A 
Sbjct: 828  QLAGYVSEVSAYHH--GEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAA 885

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL      +  +     +++    +G   EP +     P VL+NG  GI  G ++
Sbjct: 886  RYIFTRLAFYTRLVFHEADDPILEY-EYEEGQRIEPKMYVPVIPTVLINGSEGIGTGWSS 944

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             +P +N  +V++     ID  ++                     G  G     A G G  
Sbjct: 945  FVPNYNPRDVIENLRRYIDGEEMQR-------------MTPWYRGFRGRIEENAAGTGFE 991

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQ 306
             I  V          +   +TE+P +       E + E     EKR   IAD RD S  +
Sbjct: 992  TIGLVRRC-----GEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHE 1046

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVA 363
                 +++            L +Y  L+S  S+  + L   +G        + I+K F  
Sbjct: 1047 EIHFTVKVGEERVERPEREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKEFAP 1106

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R E   RR  Y L        +L      +  +     II              Q    
Sbjct: 1107 IRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKRKKALIEELFSQGYDP 1166

Query: 424  ASDIKDLIDL-----------IDDSSYTIGSDGTM----YLSEVQTRAILELRLARLTGL 468
              +I+D  +            +DD +   G +         +      +L + +  LT  
Sbjct: 1167 MKEIEDAANAGIRAALKRDVIVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWSLTLE 1226

Query: 469  GRDDIRNELNSLGIEIKECLD 489
              +D+R E+    +E++E   
Sbjct: 1227 KVEDLRGEMRQKELELEELRH 1247


>gi|21732255|emb|CAD37176.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732258|emb|CAD37177.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732262|emb|CAD37179.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732264|emb|CAD37180.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|330444050|ref|YP_004377036.1| DNA gyrase/topoisomerase IV subunit A [Chlamydophila pecorum E58]
 gi|328807160|gb|AEB41333.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pecorum E58]
          Length = 474

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/507 (25%), Positives = 219/507 (43%), Gaps = 50/507 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DVSELFKTQFMHYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M  +HPHG+AAI +AL  +    + +  LIE QGNFG+   GDP AA RY E RL   
Sbjct: 60  RTMA-FHPHGDAAIIEALVVL----ANKGYLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A         D +  + +YDG  QEP  L ++ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 AK--ETLFNTDLMCMQDSYDGRDQEPKTLPSKLPLLLLHGVDGIAVGMMTKIFPHNFSEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++ N    L         PDFP+GA++         Y  G GS+++R    I  
Sbjct: 173 IQAQIALLKNRPFTL--------LPDFPSGALM-----DATQYQDGLGSVLLRAKIQI-- 217

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +++ EI        ++  I    +   I    D   +       + I+L RG 
Sbjct: 218 --LDDKTLLIQEICPSTTTETLIHSIENAAKRGVIKI--DSIQDFSTDLPHIEIKLPRGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK-AFVAFREEVVVRRTKYLL 377
            A+ +L  L+ +T  Q        A++ + P   ++  ILK    A +E +       L 
Sbjct: 274 HAEALLPALFEHTECQVELFSRPTAIHHHSPIECSVSTILKFHTEALQEYLQKELQLLLE 333

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
              R+  H  +        L           +P   R     R       + ++ ++   
Sbjct: 334 QLEREHYHKSLEYLFIKHRLY----------DPVRERLSKATRVSQEHIHQTILSVLAPW 383

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              + +      ++  T  +  L + ++     +  + E+++L  +       LS   R+
Sbjct: 384 LPELPALP----TKADTGQLASLTIRKILCFREETYKKEISALEKKQLAVKKDLS---RI 436

Query: 498 LGIIKQELLSVKDELD--TPRRTRIVE 522
                + L  + +       R+T+I +
Sbjct: 437 KEYTIKYLQDLLNRYAHLGKRKTQITQ 463


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/521 (18%), Positives = 192/521 (36%), Gaps = 64/521 (12%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            EH +  D    +    +S  D +    + ++ +    R+IP L DGLKP  R++LF   +
Sbjct: 716  EHNLPEDYLYGQTTKYLSYNDFVNKELVLFSNS-DNERSIPCLVDGLKPGQRKVLFCCFK 774

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ VK A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+
Sbjct: 775  RN---DKREVKVAQLAGSVAEMSAYHHGEVSLMMTIVGLAQNFVGSNNLNLLQPLGQFGT 831

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLV 176
                G   A+ RY    L   A  +   +  + + +  NYD     EP       P VLV
Sbjct: 832  RLHGGKDSASPRYIFTMLSSLARLVFPPVDDNLLKY--NYDDNQRVEPEWYIPIIPMVLV 889

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GI  G A+ IP +++ E+V+    ++   +            P  P      G   
Sbjct: 890  NGAEGIGTGWASKIPNYDIREIVNNIHRMLSGDE----------PLPMLPNYKGFKGTIE 939

Query: 237  -IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKR 292
             + N      G + I   + IE          ++E+P +       E + E +    EK 
Sbjct: 940  QVMNNQYMNSGEVAIIDSTTIE----------ISELPVKAWTQTYKENVLEPMLNGTEKV 989

Query: 293  IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GY 347
               I D ++       R V+ +      +      ++   LQ+  + N +        GY
Sbjct: 990  PPLITDFKEYHTDTTVRFVVRMSEEKLREAEAAGFHKVFKLQNPLTCNSMPEEVRVCAGY 1049

Query: 348  KPERFTL--------IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
              + F L           L   +      +  + +++L K +    +          L  
Sbjct: 1050 SQDFFELRMKYYVLRKDWLVGMLGAESAKLTNQARFILEKIQGTLVIEN---KPKKELIR 1106

Query: 400  VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
            +++ + +  +P  A +   +++ + +      +   +   +                +L 
Sbjct: 1107 MLQQMGYDSDPVKAWKLAQEKNEDETLEDQEEEEGKEEEASGPDY----------NYLLS 1156

Query: 460  LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            + +  LT   ++++  + ++   E+        S + L   
Sbjct: 1157 MPMWFLTKEKKEELCKQRDAKLTELNTLKK--KSPADLWKE 1195


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 200/524 (38%), Gaps = 67/524 (12%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              +  +  +  + I+D +    + ++++  + R+IP + DGLKP  R+IL+G  +  ++ 
Sbjct: 738  PGDNLDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKLKN 796

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
              K  + A    +V   +H  G  ++   +  MAQ++  S  + L++  G FGS    G 
Sbjct: 797  EIKVAQLAAYVADVSSYHH--GEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGK 854

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              AA RY    L +    + ++     +++  + D S  EP       P +LVNG  GI 
Sbjct: 855  DAAAARYIFTELNEITRTIFNEADDPLLNYLQD-DESTVEPQWYLPVLPMILVNGADGIG 913

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +TNIP++N  ++V     ++                P         G  G  +    
Sbjct: 914  TGWSTNIPSYNPLDIVANLRRLMRGE-------------PMEEMNPWYKGWYG--DIEKV 958

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            G     I G   IE+   D   I ++E+P +     + E +   +  ++ V      +E 
Sbjct: 959  GPQKFKISGR--IEQI--DDNTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDMEEQ 1014

Query: 304  DRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                 R V++L     A  +   L   ++  S  SL ++     +G   +   ++ I+K 
Sbjct: 1015 HTTSIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHGRIKKYLDVLDIVKD 1074

Query: 361  FVAFREEVVVRRTKYLLNKARDRAH------------VLVGLAIAVANLDEVVRIIRFSP 408
            F   R E   +R  ++L   + +              +   L++A     E++ I+  + 
Sbjct: 1075 FYFVRLEYYEKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVANKKKKELIGILEANK 1134

Query: 409  NPETAR-----RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------- 454
              +  +      +++    +  + +D+ID    +     + G   +S++           
Sbjct: 1135 FLKFTKDGRPIEQVVVDDDDDDEDEDVIDGAGGAGVDGIAGGEADISQLNLKEVDENPTN 1194

Query: 455  -----------RAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                         IL + +  LT      +  E      ++++ 
Sbjct: 1195 EHRPETVSSSYDYILGMTIWSLTHERYVKLLAEKEKYQNQLQDL 1238


>gi|192382650|gb|ACF04346.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDG   EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGREHEPLVLPTRFP 148


>gi|255022892|ref|ZP_05294878.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-208]
          Length = 303

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/314 (29%), Positives = 158/314 (50%), Gaps = 33/314 (10%)

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  +
Sbjct: 21  TGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQ 80

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E++ +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L        
Sbjct: 81  KEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTN----- 135

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   SE Q  AI+ L+L RLT     ++++E  SL  +I 
Sbjct: 136 ---------------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQIS 174

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVS 543
               IL   + L+ ++K+EL  +K +  T RRT +   + +  ++ E  +  ED++V+V+
Sbjct: 175 VLEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVT 234

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYVKR     Y A          + M++ D    +  +++  S+L F+S G      V
Sbjct: 235 KEGYVKRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPV 289

Query: 604 WRLPIGSPQARGKA 617
             LP    +  G  
Sbjct: 290 HELPDIRWKNLGDH 303


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/526 (19%), Positives = 200/526 (38%), Gaps = 70/526 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ +    K   +V+  D +    + ++ N+   R+IP L DG KP  R++LF   +   
Sbjct: 698  LAEEYLYNKDTRAVTFKDFVNRELVLFS-NLDNERSIPCLVDGFKPGQRKVLFACFKR-- 754

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
              +K+ VK A+++G V     + HG  ++   +  +AQD+  S  + L+   G FG+   
Sbjct: 755  -ADKREVKVAQLAGAVAEISAYHHGEQSLMGTIVNLAQDFVGSNNINLLLPIGQFGTRLQ 813

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY   +L      +      + + F    +   +         P VLVNG  
Sbjct: 814  GGKDSASARYIFTQLSPVTRSIFPAHDDNVLRFLYEENQRIEPEWYCP-IIPMVLVNGAQ 872

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +TNIP +N  ++V     +I                              I   
Sbjct: 873  GIGTGWSTNIPNYNPRDIVKNIKRLIAGESQ-----------------------KAIAPW 909

Query: 241  YATGRGSIVI----RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-----REK 291
            Y   RG+I+     R   + E  + D   I +TE+P +       EK+ E +     ++K
Sbjct: 910  YKNFRGNIIQIDSSRYACYGEVATIDDNTIEITELPVKQWTQDYKEKVLEALLDSSDKDK 969

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI----LNQLYRYTSLQSLFSVNMVALNGY 347
            +   + D ++       + V++L  G   ++     L+Q+++  S+ +   + +    G 
Sbjct: 970  KAPLVLDYKEYHTDTTVKFVVKLAPGKLRELERGEDLHQVFKLQSVINTTCMVLFDAAGC 1029

Query: 348  KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA-------------- 393
                 +   I + F   R+E  ++R  YLL   + ++  L   A                
Sbjct: 1030 LRTYSSPEEITQEFYDCRKEKYIQRKDYLLGVLQAQSQRLTNQARFIVAKINNEIVMENK 1089

Query: 394  -VANLDEVVRIIRFSPNP-ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
              A + E +  ++F P+P +  + E   +    S   +L +           +GT   S 
Sbjct: 1090 KKAVIVETLIKMKFDPDPVKKWKEEQKLKELRESGEIELDEEDQVDDDEEDGEGTSASSS 1149

Query: 452  VQT--------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
             +           ++ + L +L+   ++ +  E      E+K    
Sbjct: 1150 TKVLETKLSDYDYLVGMALIKLSEEEKNKLLRESEEKMAEVKSLEK 1195


>gi|269838905|ref|YP_001950213.2| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|239793701|dbj|BAG41783.2| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 514

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 120/506 (23%), Positives = 213/506 (42%), Gaps = 37/506 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +   S+ D  + +   Y   V L R++PDL DGLKPV RRIL+   Q+      ++ 
Sbjct: 18  DRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQVCRT---QFE 74

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR++G  MG YHPHGN+AIY A   M Q  S     + G+GNFGS+  D  AAERYT 
Sbjct: 75  KSARLTGHCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMT-DGAAAERYTN 130

Query: 133 CRLQKAAHFLLD--DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            RL        D   +  +T  F PNYD    EPV L A+ PNVL+NGG GI VG+ T +
Sbjct: 131 VRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKL 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PT     V++    +     +      + ++      G ++  +           GS+  
Sbjct: 191 PTFTPESVLEVLNRMFKGEKLQAVDFAKTLKYHHKWGGQLVRSKENQAQWKQMFVGSMAN 250

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                +     D +++ ++  P   N    ++K+  +    +          + +     
Sbjct: 251 LQFEAVLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHKC--------FNSKGTTTY 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE K G + D     + +              +N  + E  T+ G+             
Sbjct: 303 QIECKPGFNYDQFDKFVEKVRKA--TMQRQAFKINVTRREAKTVDGV-----------TT 349

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            +T++L     D       + +A+       RI +       A  +L+  + +  D+   
Sbjct: 350 FKTEFLALSVPDLILQWCRMRVALELKSLAYRIKKQE--AAIAYSKLLIYAVDKLDLIFK 407

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                D   ++     + ++  Q + IL+L++ +L+ L +  ++    +L  + +E   +
Sbjct: 408 ALRQSDPDASLQKL--LKITAEQAKQILDLQVRKLSKLDQSKLKG---TLKTQEQELKQL 462

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPR 516
            + +++    +  +L +V+  LD  R
Sbjct: 463 QTWQAKPKAQVLLDLAAVQQALDKDR 488


>gi|193735132|gb|ACF20075.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/156 (58%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPH +++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHCDSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|315926261|ref|ZP_07922447.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620438|gb|EFV00433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 208

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 107/208 (51%), Positives = 143/208 (68%), Gaps = 5/208 (2%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           ++ D+ +DT DF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHNL EV + 
Sbjct: 1   MVRDIDQDTADFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNLREVNEA 60

Query: 202 CVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
               + +P+   + L    ME I+GPDFP GA+I+GR GI++AY TGRGS+ +R V  +E
Sbjct: 61  VQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTMRAVIDME 120

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316
           +    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R+VI LKR
Sbjct: 121 EDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQRLVIVLKR 180

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL 344
            A   V++N LY++T+LQ  F  NM+AL
Sbjct: 181 DAQPRVVMNNLYKHTALQDTFGCNMLAL 208


>gi|192382628|gb|ACF04335.1| GyrA [Neisseria lactamica]
 gi|192382644|gb|ACF04343.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|161511947|emb|CAP45393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 156

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/149 (61%), Positives = 116/149 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            + P V+  + PN+LVNG  GIAVGMAT 
Sbjct: 121 EKIPDVMPTKIPNLLVNGSSGIAVGMATK 149


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/515 (16%), Positives = 187/515 (36%), Gaps = 57/515 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  ++ + K V
Sbjct: 775  DHSVSKISYTDFINKELILFSM-ADNVRSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVV 833

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
            + A     +    + HG+ ++   +  +AQ +                 G   A+ RY  
Sbjct: 834  ELAGHVSGMTA--YQHGDISLQQTIVGLAQSF----------------GGSDCASARYIY 875

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL   A  +        + +  + DG   EP +     P +LVNG  GI  G +++IP 
Sbjct: 876  TRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSSSIPN 934

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +N  ++VD    ++D  +               P      G TG       G       G
Sbjct: 935  YNPEDIVDNLKRLMDGEETR-------------PMQPWFRGFTG--EVTDVGGDRFKFSG 979

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +          +++ +TE+P +       +K+ ++++ ++         + +     +  
Sbjct: 980  IIK----ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKNMKS 1035

Query: 313  ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
             L  G      L + ++ +   +  ++      G   +  T+  ILK F  +R +   +R
Sbjct: 1036 ALSEG------LEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTYRLKFYEKR 1089

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             +Y L++ +     L   A  V  + +   ++         +    +       + + + 
Sbjct: 1090 KQYQLSQLQKELDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKAFPKVAEAVK 1149

Query: 433  LIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              ++       D      + +        +L + +  LT    + +R ++    +E+   
Sbjct: 1150 AGEEERVVEEDDDESDSQDTEVLSSAYDYLLGMAIWSLTQERVEKLRRQIGEKEVEVDAL 1209

Query: 488  -----LDILSSRSRLLGIIKQELLSVKDELDTPRR 517
                  DI      L   I +    ++DE    R+
Sbjct: 1210 IKMSKEDIWKRD--LDDFIAEWRFQLEDEHRRQRK 1242


>gi|167945163|ref|ZP_02532237.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 210

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/214 (46%), Positives = 142/214 (66%), Gaps = 7/214 (3%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           MAQ +S R  L++GQGN+GS D     AA RYTE RL   +  LL +LG+ TV+++PN+D
Sbjct: 2   MAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRLTPYSQVLLSELGQGTVEWQPNFD 61

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G+ QEP +L AR PNVL+NG  GIAVGMAT+IP HNL EV   CV ++++P   LD L++
Sbjct: 62  GTLQEPSLLPARLPNVLLNGSTGIAVGMATDIPPHNLREVAAACVHLLESPKASLDDLLD 121

Query: 219 IIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            I+GPD+PT A +I     I+  Y +G+GSI +R     E+      +I+VT +P+QV+ 
Sbjct: 122 HIKGPDYPTEAEIITPPEEIRKIYVSGKGSIRMRARYEREQG-----EIIVTTLPHQVSG 176

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           A +LE+IA  ++ K++  + DLRDESD +    +
Sbjct: 177 ARVLEQIAAQMQAKKLPMVEDLRDESDHESPTRL 210


>gi|193735128|gb|ACF20073.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 113/156 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG++  Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYQ 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 56/294 (19%)

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            ++N L +++ E I+T++   +  S  +  Y+VFATKHG V+R+KLS+F +IN++GKIA+
Sbjct: 339 PIVNALEIDKDEMISTMIAVKDLSSEED--YLVFATKHGTVKRSKLSNFSRINKNGKIAI 396

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                DE+++V       +I++ TK    +RF  S +R    R + GV+GI+L +     
Sbjct: 397 NFKEGDELIAVRLTDGTKEIIIGTKHASLIRFDESKLRPLG-RTAAGVKGITLRED---- 451

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                                                    D  +  ++++E  Q+    
Sbjct: 452 -----------------------------------------DEVIGLDVTDEDQQD---- 466

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              IL V+EKG+GKRTS+  +RISNR GKGI+   +++ N  G LV +  VN ++ +++V
Sbjct: 467 --EILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKN--GNLVCITTVNGDEDLMIV 522

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++ G +IR+ V +I    R+ +GV +     ++ V +V ++   E        E
Sbjct: 523 TNSGVIIRLHVADISQNGRSAQGVRLIRLGDNQHVATVAKVEPDENEIAESPVE 576



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 82/564 (14%), Positives = 188/564 (33%), Gaps = 56/564 (9%)

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--VSHIEKTSGD 262
             +  + D + L + IR   F    + +     ++       S    G   S++E  +  
Sbjct: 53  FTETTEYDYETLQKRIRELAFLNKGIQISLRDERDDENIQEDSYHYEGGIKSYVEMLNKS 112

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-----ADLRDESDRQGYRVVIELKRG 317
           +E +    I     K  +  +IA         ++          E           L R 
Sbjct: 113 KEVLYDEPIYIHDTKDDVEVEIAIQYNNGFATNLLTYANNIHTYEGGTHEDGFKRALTRV 172

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            ++  I N+L +    +       ++    +     ++ +      F  +   +     +
Sbjct: 173 INSYGIKNKLLKEGEEK-------LSGEDVREGMTAVVSVKHGDPQFEGQTKTKLGNSEV 225

Query: 378 NKARDRA--HVLVGLAIAVANLDEVVR---IIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  D+    +     +   N+  ++    ++         +   + R  +A ++  L  
Sbjct: 226 RQIVDKLFSELFERFLLENPNVARIIVDKGVMASRARLAAKKAREVTRRKSALEVSSLPG 285

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            + D S     +  +Y+ E  + A    +L R +      I      +    K  L I++
Sbjct: 286 KLADCSSKKPEECELYIVEGDS-AGGSAKLRRDSKT--QAILPLRGKILNVEKARLPIVN 342

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +       +   +++VKD                         ED +V  +  G VKR  
Sbjct: 343 ALEIDKDEMISTMIAVKD---------------------LSSEEDYLVFATKHGTVKRSK 381

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS +   R    G+  +  ++ D +  + +      ++  +    + +    +L      
Sbjct: 382 LSNF--SRINKNGKIAINFKEGDELIAVRLTDGTKEIIIGTKHASLIRFDESKLRPLGRT 439

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A G   +  ++L + + +  +    ED+       ++  T+ G  +R     +   NR G
Sbjct: 440 AAG---VKGITLREDDEVIGLDVTDEDQQDE----ILIVTEKGYGKRTSADQYRISNRGG 492

Query: 673 K---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           K    A   +    ++ + T   + D+++ T  G  +R  ++ I     R++ GVR I L
Sbjct: 493 KGIKTATLTEKNGNLVCITTVNGDEDLMIVTNSGVIIRLHVADISQNG-RSAQGVRLIRL 551

Query: 730 AKGDQVISMAIVLHADADYDERIC 753
                V ++A V   + +  E   
Sbjct: 552 GDNQHVATVAKVEPDENEIAESPV 575


>gi|36988477|gb|AAQ87914.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 116/147 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + P +LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 109/597 (18%), Positives = 213/597 (35%), Gaps = 77/597 (12%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 +  IT + I+D +    + ++++  + R+IP + DG KP  R++L+G  +  +  
Sbjct: 719  PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 777

Query: 68   NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
              K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 778  EIKVAQLAGYVSENTGYHH--GEQSLVQTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGK 835

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              +A RY    L +    + + L      +  + D    EP       P +LVNG  GI 
Sbjct: 836  DFSAARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPVLPMILVNGAEGIG 894

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +TNIP++N  ++V     +++      + L E+   P +      L   G +    +
Sbjct: 895  TGWSTNIPSYNPKDLVANIRRLMNG-----EELQEM--TPWYKGWGGDLEPMGPQKFKVS 947

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            GR          IE+   D   + +TEIP +     + E +      ++        +E 
Sbjct: 948  GR----------IEQI--DSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH 995

Query: 304  DRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                 R V++L        +   L   ++  S  SL ++      G   +   ++ I+K 
Sbjct: 996  HTTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKD 1055

Query: 361  FVAFREEVVVRRTKYLLNKARDRA------------HVLVGLAIAVANLDEVVRI----- 403
            F   R E   +R  Y+ +  +++              +   L++A     ++V +     
Sbjct: 1056 FYYVRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEEHN 1115

Query: 404  -IRFSPNPETARRE------------------LMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              +FS + +  +                            + I ++ +   + +  +   
Sbjct: 1116 FTKFSKDGKPIKSNQELLTGEAADEEEEVEEQEGDEDVGDTSIANIQEGETEQTAHVPET 1175

Query: 445  GTMYLSEVQTRAILELRLARLTG--LGRDDIRNELNSLGIEIKECLDILSSRSRL----- 497
                   +   AI  L   R       RD    ELN+L  +  + L        L     
Sbjct: 1176 IYSSYDYLLGMAIWSLTYERFMKIMQQRDQKEAELNALLSKSAKDLWNHDLDEFLVEFDK 1235

Query: 498  ----LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
                    ++ L S   +  T RR +         ++   V      T S    VK+
Sbjct: 1236 FLIRDEQERESLASNGKKKPTKRRAKATATKEQPTNKKIKVEPKEKKTTSVKPVVKK 1292


>gi|36988482|gb|AAQ87915.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 87/146 (59%), Positives = 116/146 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYD 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           NYDG+   P V+  + P +LVNG  G
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|193735112|gb|ACF20065.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG++  Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 104/442 (23%), Positives = 178/442 (40%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   ++  D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 664  LPERYLYTKGTKHITYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 721

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+   
Sbjct: 722  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLT 779

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    ++++   DG   EP+      P VLVNG  
Sbjct: 780  GGKDCASARYIFTLMSPLTRLIFHPLDDPLLEYQ-TDDGQRIEPLWYLPIIPMVLVNGAE 838

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G AT I  HN  E++     +I++ +               P      GR    + 
Sbjct: 839  GIGTGWATKIANHNPREIMKNLRRMINSEE----------PVAMHPWYKNFAGRMEYVS- 887

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
                 G  V  G  +I+   GDR  + +TE+P  V      E + E +    EK    ++
Sbjct: 888  ----DGRYVHTG--NIQILPGDR--VEITELPVGVWTQNYKENVLEALANGTEKVKAVVS 939

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R V+    G      S D    ++++ TS  S   ++    N       
Sbjct: 940  EYREYHTDTTVRFVVSFAPGEFNRIRSEDGGFYRVFKLTSSLSTNQMHAFDQNNCLRRFP 999

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T + +LK F   R E   RR  YL+ +   +A  L   A  +    E   ++      + 
Sbjct: 1000 TTMDVLKEFYKLRLEYYARRKDYLVGQLTAQADRLSDQARFILEKCEKTLVVENKQ-RKA 1058

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL++R +    +K+    I
Sbjct: 1059 MCDELVKRGYRPDPVKEWQRRI 1080


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/442 (21%), Positives = 178/442 (40%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG  S++  D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 660  LPERYLYTKGTKSITYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 717

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  +  + L+E +G FG+   
Sbjct: 718  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLT 775

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    +D++ + DG   EP+      P VLVNG  
Sbjct: 776  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAE 834

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E+++    +I+  +               P     LGR    + 
Sbjct: 835  GIGTGWSTKISNYNPREIMNNLRKMINGQE----------PVVMHPWYKNFLGRIEYVS- 883

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
                 G  V  G   I   +    ++ ++E+P  V      E + E +     K    ++
Sbjct: 884  ----DGRYVQTGNLQILHGN----RLEISELPVGVWTQNYKENVLEALSNGTEKVKAVVS 935

Query: 298  DLRDESDRQGYRVVIELKRGAS-----ADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + ++       R VI    G        +   +++++ T+  S   ++    N       
Sbjct: 936  EYKEYHTDTTVRFVISFAPGEFERIRAEEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFP 995

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T I ILK F   R E   RR  +L+ +   +A  L   A  +       +++  +   + 
Sbjct: 996  TAIDILKEFYKLRREYYARRRDFLVGQLTAQADRLSDQARFILE-KCEKKLVVENKQRKA 1054

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL++R +    +K+    I
Sbjct: 1055 MCDELLKRGYRPDPVKEWQRRI 1076


>gi|294992595|gb|ADF57424.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 88/168 (52%), Positives = 120/168 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|294992597|gb|ADF57425.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 88/168 (52%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|193735122|gb|ACF20070.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYQ 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|47420004|gb|AAT27354.1| DNA gyrase A [Campylobacter fetus]
          Length = 260

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 108/286 (37%), Positives = 170/286 (59%), Gaps = 26/286 (9%)

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RR
Sbjct: 1   ELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRR 60

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +            
Sbjct: 61  TIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK------------ 108

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q+ AIL++RL++LTGL R+ +  EL  +   I++   IL 
Sbjct: 109 --------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILK 154

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP
Sbjct: 155 SETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVP 214

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
              Y  Q+RGGKG+  V   D+DF+   F   +H +++F +  G +
Sbjct: 215 SKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQL 260



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 15/212 (7%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ D ++++   + + +   + + G   +F +S +
Sbjct: 58  IRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTN---SARDGLMAKFGLSEL 114

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +       + +R   L   ++    A +       ++    +K  +    +I  +  EI 
Sbjct: 115 Q---SNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIK 171

Query: 774 SLKN---DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           S       + +  +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A 
Sbjct: 172 SKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAV 231

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
                +    + + F    +D ++ V+D+G L
Sbjct: 232 TTYDDD---FIESFFTCMSHDTLMFVTDRGQL 260


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 172/488 (35%), Gaps = 47/488 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 244 DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 302

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV---DGDPPAA 127
           + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+      D  AA
Sbjct: 303 QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 360

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             Y    L K    +          +    D    EP       P +LVNG  GI  G +
Sbjct: 361 RXYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWS 419

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP  N  E++     ++++ +++                    G TG        R  
Sbjct: 420 TYIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYR 466

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDR 305
           +  R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D 
Sbjct: 467 MYGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDD 520

Query: 306 QGYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F 
Sbjct: 521 N-IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFY 579

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R E   +R  ++  + +            +  + E    +   P      +EL    +
Sbjct: 580 YVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAII-QELENLGF 638

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                       +           +Y +      +L +R+  LT      +  +      
Sbjct: 639 P---------RFNKEGKPYYGSEELYGTY---EYLLGMRIWSLTKERYQKLLKQKQEKET 686

Query: 483 EIKECLDI 490
           E++  L +
Sbjct: 687 ELENLLKL 694


>gi|108937148|gb|ABG23386.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937150|gb|ABG23387.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937152|gb|ABG23388.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937154|gb|ABG23389.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937156|gb|ABG23390.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937158|gb|ABG23391.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876161|gb|ABK30940.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 115/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/497 (17%), Positives = 175/497 (35%), Gaps = 31/497 (6%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
               S     +    ++S +  +    + ++    L R+IP++ DGLKP  R+I+F   + 
Sbjct: 658  QAFSPGTFLDHTADTISYSQFVHKELILFSR-ADLERSIPNMVDGLKPGQRKIMFACFKR 716

Query: 64   GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS-- 119
             ++ + K  + +    E    +H  G A++   +  +AQD+  S  +  +  QG FG+  
Sbjct: 717  NLKTDVKVSQLSGYVSEHSAYHH--GEASLSGTIVGLAQDFVGSNNVNYLVPQGQFGTRL 774

Query: 120  VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   A+ RY   RL      L ++     + +  N +G   EP       P VLVNG 
Sbjct: 775  QGGKDAASPRYIFTRLAPLTRHLFNEHDDRLLAYL-NEEGQSIEPEWYMPVVPTVLVNGA 833

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T+IP  N  ++V     ++D                  P      G      
Sbjct: 834  EGIGTGWSTSIPNFNPRDIVANLRLMLDGEQ----------PVAMKPWYRGFKGTIEEVP 883

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI---VDI 296
               +G+   +   ++ +     D   + +TE+P +       E + E+V+ +       I
Sbjct: 884  TKTSGKSYQICGVINQV-----DDTTLDITELPIRKWTQDYKEFLEEMVKPEDKNATPFI 938

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFT 353
             D ++          + L      + +   L   ++  +  S  ++ +    G   +  +
Sbjct: 939  QDYKEYHTDLVVHFRVTLSESKMREALAAGLLDKFKLKTKISTGNMMLFNAEGAIQKYAS 998

Query: 354  LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
               IL+ F   R    V+R   LL  A      +      +  +    ++   +   +  
Sbjct: 999  PEDILRDFYDLRLAYYVKRRAALLRAAEADLLRISNKVRFILAVV-GGQLKLSNRRKKDV 1057

Query: 414  RRELMQRSWN-ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
              EL    ++   + K             G       +      +L + L+ LT      
Sbjct: 1058 EGELEDEGYDKLPNQKKAAQQAAIDEGEDGDGEGGASAPASYDYLLSMPLSSLTLEKVQA 1117

Query: 473  IRNELNSLGIEIKECLD 489
            +++E       ++    
Sbjct: 1118 LQSESEDWQATVQRLRA 1134


>gi|77166858|gb|ABA62405.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 152

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 109/152 (71%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+ 
Sbjct: 1   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYTE RL  A+  
Sbjct: 61  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           L++DL K+TV+  PNYD + +EP V  +++P 
Sbjct: 121 LMEDLDKNTVEMVPNYDETKKEPTVFPSKFPM 152


>gi|294992605|gb|ADF57429.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 120/168 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|193735116|gb|ACF20067.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYA 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735114|gb|ACF20066.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735120|gb|ACF20069.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735126|gb|ACF20072.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYG 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|329725076|gb|EGG61570.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU144]
          Length = 379

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 178/439 (40%), Gaps = 66/439 (15%)

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
            L+L RLT    + ++ E   L   IKE  +IL +   LL +IK EL  +K +    R +
Sbjct: 1   MLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVDRLS 60

Query: 519 RIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            I   + +  ++ E  +  E+++++++  GY+KR     + A      G + + ++D D 
Sbjct: 61  TIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNAS-----GVTEIGLKDGDR 115

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +     V+T  +VL F++ G      V +L     +  G+ +  I+ +++ E +  +   
Sbjct: 116 LLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVY-- 173

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQEND 695
             ++   N  + + ATK+G ++++  S F     +   I MK+  +DE+++V     +  
Sbjct: 174 -NEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQL 232

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I + T  G  + +  + +     R + GV+ I+L   D V+    V  +D+         
Sbjct: 233 ITVLTHKGMSLTYSTNELSDTGLR-AAGVKSINLKDEDYVVMTEDVNDSDS--------- 282

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                       I+ V+++G  KR    
Sbjct: 283 --------------------------------------------IIMVTQRGAMKRIDFN 298

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
             + + R+ +GI      K  +   +VA   V +N    +V  +       ++++ ++ +
Sbjct: 299 VLQEAKRAQRGITLLKELKK-KPHRIVAGAVVKENHTKYIVFSQHHEEYGNIDDVHLSEQ 357

Query: 876 ATKGVVIFSTAKDERVVSV 894
            T G  I  T     V S+
Sbjct: 358 YTNGSFIIDTDDFGEVESM 376



 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 119/279 (42%), Gaps = 15/279 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E   + +   ++    +   ++  T+HG ++R         N SG   + L   D +L  
Sbjct: 63  EAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTS---TRSFNASGVTEIGLKDGDRLLKH 119

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHA 744
           E+   ++ +L+ T  G+ +  P+  +        +G    + + + + ++V++  +    
Sbjct: 120 ESVNTQDTVLVFTNKGRYLFIPVHKLADI-RWKELGQHISQIVPIDEDEEVVN--VYNEK 176

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV- 803
           D   +            ++  +   +     K   +++    +E    ++L+   ++TV 
Sbjct: 177 DFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVL 236

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG     S+ +   +     G+++ ++   +    +V    VND+D II+V+ +G + 
Sbjct: 237 THKGMSLTYSTNELSDTGLRAAGVKSINLKDED---YVVMTEDVNDSDSIIMVTQRGAMK 293

Query: 864 RVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
           R+  N ++ A RA +G+ +      K  R+V+   ++E+
Sbjct: 294 RIDFNVLQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 332



 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 80/219 (36%), Gaps = 13/219 (5%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA- 746
                E  IL  T+ G   R    +       N+ GV  I L  GD+++    V   D  
Sbjct: 75  VMVPSEEVILSLTQHGYIKRTSTRSF------NASGVTEIGLKDGDRLLKHESVNTQDTV 128

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++       +     +   +  +  S       +  +     ++    E F +  +
Sbjct: 129 LVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKNEAFYIMAT 188

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           + G  K++S+  F+ + R  K +    V   +E   L+ V  +  +  I +++ KG  + 
Sbjct: 189 KNGMIKKSSASQFKTT-RFNKPLINMKVKDKDE---LINVVRLESDQLITVLTHKGMSLT 244

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 245 YSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 283


>gi|294992579|gb|ADF57416.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992581|gb|ADF57417.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992587|gb|ADF57420.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992591|gb|ADF57422.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992599|gb|ADF57426.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/168 (52%), Positives = 120/168 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 178/442 (40%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   VS +D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 661  LPERYLYTKGTKHVSYSDFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 718

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+   
Sbjct: 719  --DKREVKVAQLSGSVAEMSAYHHGEMSLQMTIVNLAQNFVGSNNINLLEPRGQFGTRLT 776

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    + ++ + DG   EP+      P VLVNG  
Sbjct: 777  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLQYQVD-DGQRIEPIWYIPIIPMVLVNGAE 835

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E++     +I+      + L+        P         G  + 
Sbjct: 836  GIGTGWSTKIANYNPRELISNLRRMING-----EELL--------PLHPWYKNFQGSMDY 882

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
             + GR   V  G  +I+    +R  I +TE+P  V      E + E++     K    I+
Sbjct: 883  VSDGR--YVHSG--NIQLLPDNR--IEITELPVGVWTQNYKENVLEVLSNGTEKVKAVIS 936

Query: 298  DLRDESDRQGYRVVIELKRGASADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R V+    G    +       +++ + +S  S   ++    N       
Sbjct: 937  EYREYHTDTTVRFVVSFAPGEFERLRSEPGGFHRVLKLSSSLSTNQMHAFDENNCLRRFP 996

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   IL+ F   R E   RR  YL+ +   ++  L   A  +       ++   +   + 
Sbjct: 997  SPKDILQEFYKLRLEYYNRRKDYLVGQLTAQSDRLSDQARFILE-KCEKKLTIENKQRKA 1055

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL++R +    +K+    I
Sbjct: 1056 MIEELIKRGYRPDPVKEWQRRI 1077


>gi|294992603|gb|ADF57428.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 120/168 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+A+IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDASIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 188/505 (37%), Gaps = 41/505 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                   K ++ +S +D +    + ++ N    R+IP L DGLKP  R++LF   +   +
Sbjct: 670  PEPYLYGKEVSDISYSDFVNKELIHFS-NADNIRSIPSLMDGLKPGQRKVLFTCFKRNDK 728

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDG 122
             + K  + A    E+   +H  G A++   +  +AQ++  S  + L++  G FG+    G
Sbjct: 729  KDIKVAQLAGSVAEMSAYHH--GEASLMGTIINLAQNFVGSNNINLLQPIGQFGTRLHGG 786

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY    L   A ++ D   +  ++++   D    EP       P VLVNG  GI
Sbjct: 787  KDSASARYIFTMLSPVARYMFDQKDEPLLEYQFE-DNLRIEPDWYAPLIPVVLVNGAEGI 845

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  E+VD    +     +  +  +E                 G      
Sbjct: 846  GTGYSTRIPNYNPREIVDNLKRL-----LAGEEPIE--------MHPWYKNFKGEIKQVE 892

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIADL 299
              +  I             +   + + E+P +    A  E + E +     K    I++ 
Sbjct: 893  ENKYQIDGV------IKKINETTLEIVELPIRTWTQAYKEGVLEPMLHGGEKTPSFISNY 946

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIG 356
            ++       R ++ L            L +   L+  FS N + L   +G          
Sbjct: 947  KEYHTDTTVRFIVTLTEANMEAAEKIGLLKKFKLEGSFSTNSMVLFDAHGCLRRYGNAQE 1006

Query: 357  ILKAFVAFREEVVVRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ILK F   + E  V+R ++L      +   +       +  +D  + I   S     A  
Sbjct: 1007 ILKEFYETKLEFYVKRKEWLEGLLEAESRKLSNQARFILEKIDGKLAIENKSKRDLIAM- 1065

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR--AILELRLARLTGLGRDDI 473
             L   ++++  +K   +       +  SD +   ++       IL + +  LT   +D++
Sbjct: 1066 -LKSANFDSDPVKSWQNKQKSVVESEESDASEQETDEGPDFNYILNMNMWSLTKERKDEL 1124

Query: 474  RNELNSLGIEIKECLDILSSRSRLL 498
               + +   +I E   +     ++L
Sbjct: 1125 ---IANKNKKIAEYQTLKEKTPKML 1146


>gi|36988433|gb|AAQ87910.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|36988448|gb|AAQ87911.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/146 (58%), Positives = 115/146 (78%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYN 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           NYDG+   P V+  + P +LVNG  G
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|225550343|ref|ZP_03771292.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379497|gb|EEH01859.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 426

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 178/418 (42%), Gaps = 38/418 (9%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           ++  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++ GL  
Sbjct: 1   MEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIVEGLIK 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            V  +DE+++IIR S + + A+  L+Q                          T   +  
Sbjct: 61  CVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TFAFTNN 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++  K E 
Sbjct: 95  QAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF 154

Query: 513 DTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
              R+T++ +     ++ ++  I ++ + + +S  GY+K V    + + +    G     
Sbjct: 155 GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSKYDELG----- 209

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +  E++
Sbjct: 210 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 269

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD-FIQINRSGKIAMKLDSRDEILSVET 689
             +    E +   +   +V  +K   ++R +L++  +  N      MKL+  D ++S   
Sbjct: 270 VAVYVCNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANL 328

Query: 690 CTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             ++    ++  +KLG  + F +  I     R + G++ + L   D++ S+ IV +  
Sbjct: 329 IKKDHNQFVVAISKLGLVLMFLVHEINCL-NRLAKGIKIMKLKPNDEISSILIVPNNG 385



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ K+ E  ++  S+    KR    +  + N++ K I    +++ +  G + A     D+
Sbjct: 277 EQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKLNEND--GLISANLIKKDH 333

Query: 851 DQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +Q ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+  + 
Sbjct: 334 NQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSILIVP 382



 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           ++    ++++I    E     K     E   +E    ++  K+   L +S  G+ K  S 
Sbjct: 138 VRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSK 197

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  S          D   +     L     +N +D+I++++ K  LI +  ++I    
Sbjct: 198 KSFESSK--------YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMR 249

Query: 875 RATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
               G  +        +E+VV+V    E   VDE
Sbjct: 250 WKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 283


>gi|294992607|gb|ADF57430.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/528 (19%), Positives = 193/528 (36%), Gaps = 54/528 (10%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  ++ + I+D +    + +++     R+IP + DG KP  R+IL+G  +  +
Sbjct: 722  FEPGVHLDPDLSIIPISDFINKELILFSM-ADNIRSIPSMLDGFKPSQRKILYGCYKRNL 780

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
                K  + A   GE    +H  G+ ++  ++  +AQD+  S  L L++  G FGS    
Sbjct: 781  RSEIKVSQLAGYIGEHSAYHH--GDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQG 838

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   +A RY    L K    +        +++  + D    EP       P +L+NG  G
Sbjct: 839  GKDASAARYIFTDLSKITRKIFHVDDNPLLNYLQD-DEQTVEPEWYLPIVPMLLINGSEG 897

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +TNIP  N  ++V     ++D        + E+I            G  G     
Sbjct: 898  IGTGWSTNIPPFNPVDIVANIRRLMDGQ-----EMEEMIP--------WYRGWNGSITKI 944

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADL 299
            +  +     R   +IE+   D E I +TEIP +     M E +   +   EK+   I D+
Sbjct: 945  SADK----FRMEGNIEQI--DDETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM 998

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGI 357
             ++       V+   K      + +    R+  + ++   NMVA +  G   +   +  I
Sbjct: 999  EEQHGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEI 1058

Query: 358  LKAFVAFREEVVVRRTKYL-------LNK----ARDRAHVLVGLAIAVAN----LDEVVR 402
            ++ +   R +   RR  +L       L K    AR    ++             L E ++
Sbjct: 1059 IEDYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIENELRVNNRKRIELIEELQ 1118

Query: 403  IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--RAILEL 460
             + F    +  +    Q         ++    ++       +       +      +L +
Sbjct: 1119 RLNFPKFSKDGKPIWQQVDQEEITEAEIKVEEEEEEEIDDENLLNKSVNIFASYDYLLGM 1178

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
             +  LT      +  +      ++ E L + +        I  + L V
Sbjct: 1179 PIWSLTRERYHKLLLQKAEKEDQLTELLKLSA------KQIWNKDLEV 1220


>gi|193735124|gb|ACF20071.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735134|gb|ACF20076.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+ + Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDNSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 167/413 (40%), Gaps = 33/413 (7%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  +  + I+D +    + +++     R+IP + DG KP  R++L+G  +  +
Sbjct: 701  FEPGTHLDPDLEEIPISDFINKELILFSM-ADNVRSIPSVLDGFKPGQRKVLYGCFKRNL 759

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
            +   K  + A    E  G +H  G  ++   +  +AQD+  S  L +++  G+FGS    
Sbjct: 760  KSEIKVNQLAGYVSENTGYHH--GEQSLVQTIIGLAQDFIGSNNLNILKPNGSFGSRAAG 817

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   +A RY    + +    + + L      +  + D    EP       P +LVNG  G
Sbjct: 818  GKDFSAPRYIFTEINEITRKIFNPLDNALYKYVQD-DEQTVEPEWYLPVLPMLLVNGSEG 876

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +TN+P  N  ++V+    +++  +++                    G  G   A 
Sbjct: 877  IGTGWSTNVPPFNPTDIVNNIKKLMNGEEMNE-------------MSPWYRGWEGEIVA- 922

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                G    R +  IE+T  D  ++ +TEIP +     M E +   +  +++       +
Sbjct: 923  ---NGKDRFRVIGRIEQT--DETEVEITEIPVKTWTNNMKEFLLNGLGTEKVKPWIKDME 977

Query: 302  ESDRQGYRVVIELKRGASADVILNQLY-RYTSLQSLFSVNMVALN--GYKPERFTLIGIL 358
            E      R V++L     A  +   L  R+  + S+   NMVA +  G   +  + + I+
Sbjct: 978  EQHGMNIRFVVKLSADEMAKSLKVGLLERFNLISSVSLTNMVAFDPMGKIKKYESPLEIM 1037

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            + F   R E   RR  ++ ++ +   H L  L+     +  ++       N +
Sbjct: 1038 RDFYYVRLEYYQRRKDHITDEMQ---HQLTKLSEQARFIKLIIDKELSISNKK 1087


>gi|294992585|gb|ADF57419.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992593|gb|ADF57423.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|294992609|gb|ADF57431.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992613|gb|ADF57433.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 120/168 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|21732266|emb|CAD37181.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 114/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIA GMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAGGMATNIPPHSLNE 154


>gi|327179194|gb|AEA30140.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/147 (61%), Positives = 113/147 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SL
Sbjct: 4   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSL 63

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 64  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 123

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTH 193
           +  + PN+LVNG  GIAVGMATNIP H
Sbjct: 124 MPTKIPNLLVNGSSGIAVGMATNIPPH 150


>gi|294992615|gb|ADF57434.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/168 (54%), Positives = 120/168 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|294992583|gb|ADF57418.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDPSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 102/528 (19%), Positives = 201/528 (38%), Gaps = 71/528 (13%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +    K   +V+  D +    + ++ N    R+IP L DG KP  R++LF   +
Sbjct: 710  QQGLAEEYLYNKDTRTVTFKDFVNQELVLFS-NCDNERSIPCLVDGFKPGQRKVLFACFK 768

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNF 117
                 +K+ VK A+++G V     + HG  ++   +  +AQD+    ++ +LL  GQ   
Sbjct: 769  R---ADKREVKVAQLAGAVAELSAYHHGEVSLMGTIINLAQDYVGSNNINVLLPIGQFGT 825

Query: 118  GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY   +L      +      + + F    +   +         P VLVN
Sbjct: 826  RLQGGKDSASARYIFTQLSPVTRSVFPANDDNVLRFLYEENQRIEPEWYCP-IIPMVLVN 884

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +TNIP +N  E+V     +I                               
Sbjct: 885  GAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQKALD---------------------- 922

Query: 238  KNAYATGRGSIVI----RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---RE 290
               Y   RG I+     R   + E    D   + +TE+P +       EK+ E +    +
Sbjct: 923  -PWYKNFRGKIIQIDPSRYACYGEVAVLDDNTVEITELPIKTWTQEYKEKVLESLMESTD 981

Query: 291  KRIVDIADLRDESDRQGYRVVIELKRGASADVI----LNQLYRYTSLQSLFSVNMVALNG 346
            K+   ++D ++       + V++L  G  A++     L+ +++   + +   + +    G
Sbjct: 982  KKTPIVSDYKEYHTDTTVKFVVKLSPGKLAELERSGDLHTVFKLQQVINTTCMVLFDAAG 1041

Query: 347  YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA------------- 393
                  T   I + F   R+E  ++R +Y++   + ++  L   A               
Sbjct: 1042 CLRTYTTPEEITQEFFDVRKEKYIQRKEYMVGVLQAQSKRLTNQARFILAKINNEIIMEN 1101

Query: 394  --VANLDEVVRIIRFSPNPETARRE---LMQRSWNASDIKDLIDLIDDSSYTIGSDGTM- 447
               A++ E +  ++F P+P    +E   L +   +     D  D +D+     G+  +  
Sbjct: 1102 KKKASIVETLIKMKFDPDPVKKWKEEQKLKELRESGEVELDEEDQVDEEGDGEGTSASFT 1161

Query: 448  ------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                   LS+     ++ + L +L+   ++ +  E      E+KE   
Sbjct: 1162 TKVLETRLSDY--DYLVGMALIKLSEEEKNKLIKESEDKLAEMKELEK 1207


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 102/528 (19%), Positives = 201/528 (38%), Gaps = 71/528 (13%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +    K   +V+  D +    + ++ N    R+IP L DG KP  R++LF   +
Sbjct: 710  QQGLAEEYLYNKDTRTVTFKDFVNQELVLFS-NCDNERSIPCLVDGFKPGQRKVLFACFK 768

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNF 117
                 +K+ VK A+++G V     + HG  ++   +  +AQD+    ++ +LL  GQ   
Sbjct: 769  R---ADKREVKVAQLAGAVAELSAYHHGEVSLMGTIINLAQDYVGSNNINVLLPIGQFGT 825

Query: 118  GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY   +L      +      + + F    +   +         P VLVN
Sbjct: 826  RLQGGKDSASARYIFTQLSPVTRSVFPANDDNVLRFLYEENQRIEPEWYCP-IIPMVLVN 884

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +TNIP +N  E+V     +I                               
Sbjct: 885  GAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQKALD---------------------- 922

Query: 238  KNAYATGRGSIVI----RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---RE 290
               Y   RG I+     R   + E    D   + +TE+P +       EK+ E +    +
Sbjct: 923  -PWYKNFRGKIIQIDPSRYACYGEVAVLDDNTVEITELPIKTWTQEYKEKVLESLMESTD 981

Query: 291  KRIVDIADLRDESDRQGYRVVIELKRGASADVI----LNQLYRYTSLQSLFSVNMVALNG 346
            K+   ++D ++       + V++L  G  A++     L+ +++   + +   + +    G
Sbjct: 982  KKTPIVSDYKEYHTDTTVKFVVKLSPGKLAELERSGDLHTVFKLQQVINTTCMVLFDAAG 1041

Query: 347  YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA------------- 393
                  T   I + F   R+E  ++R +Y++   + ++  L   A               
Sbjct: 1042 CLRTYTTPEEITQEFFDVRKEKYIQRKEYMVGVLQAQSKRLTNQARFILAKINNEIIMEN 1101

Query: 394  --VANLDEVVRIIRFSPNPETARRE---LMQRSWNASDIKDLIDLIDDSSYTIGSDGTM- 447
               A++ E +  ++F P+P    +E   L +   +     D  D +D+     G+  +  
Sbjct: 1102 KKKASIVETLIKMKFDPDPVKKWKEEQKLKELRESGEVELDEEDQVDEEGDGEGTSASFT 1161

Query: 448  ------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                   LS+     ++ + L +L+   ++ +  E      E+KE   
Sbjct: 1162 TKVLETRLSDY--DYLVGMALIKLSEEEKNKLIKESEDKLAEMKELEK 1207


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
            phycodnavirus 1]
          Length = 1083

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 184/481 (38%), Gaps = 31/481 (6%)

Query: 5    IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
              + D   +     +S+ D +    + ++      R+IP+L DGLK   R+IL+   +  
Sbjct: 630  TYNRDGVLDTNQLQISVCDFVDKEMIHFSKY-DCDRSIPNLMDGLKVSQRKILYSAFKKN 688

Query: 65   VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV 120
            +    K  + +    E  G +H  G +++  A+  MAQ +    ++ +L+  GQ      
Sbjct: 689  LVSEIKVAQFSGYVSEHSGYHH--GESSLNGAIVNMAQTFVGSNNINVLMPNGQFGTRLQ 746

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ERY   +L K    +        +++  N DG+  EPV      P +LVNG  
Sbjct: 747  GGKDSASERYIFTQLNKITRMIFKKEDDVILNYL-NDDGTPVEPVFYAPILPMILVNGTK 805

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T+IP  N  E++D  +  +++P+   D     I      TG +          
Sbjct: 806  GIGTGFSTDIPCFNPKELIDYILKKLEDPNHIRD----FIPYYKHFTGTI---------- 851

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
                    + +G   I+      + I++TE+P  V     +  + + + + ++ D +D  
Sbjct: 852  EKEDSRRFITKGKYSIQN-----KTIIITELPIGVWNEDYITHLEKCIVDNKLKDYSDQS 906

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
             +S        + LK     + IL + ++ T+  S+ ++N+            +  I   
Sbjct: 907  TDS---VIYFKLTLKENMDEEAIL-KTFKLTTTLSINNMNLFDPFDKLVHYNEVHEICDD 962

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F+  R     +R  YL+    +  ++L      +  L      +R   N +       ++
Sbjct: 963  FIQVRLGYYEKRKLYLVKMLSEEMNILSNKCKYINELLNDTLDLRKKSNSQMVELLQQKK 1022

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                +D    +  +   S    +  T+     + + +L+               +EL  +
Sbjct: 1023 YDTLNDSYHYLIKMPMDSVCKENVDTLNEQFKKKKDLLDELNKTSNVDLWKKELSELKEM 1082

Query: 481  G 481
             
Sbjct: 1083 L 1083


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/520 (19%), Positives = 195/520 (37%), Gaps = 47/520 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +S TD +    + ++      R+IP + DGLKP  R+ILF   +  ++   K  
Sbjct: 688  DHSKKEISYTDFIDKELILFSK-ADCKRSIPSIVDGLKPGQRKILFSCFKRNLKKEIKVA 746

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + A    E    +H  G  ++   +  MAQ++  S  + L+   G FG+    G   A+ 
Sbjct: 747  QLAGYVSEQSAYHH--GEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRLQGGKDSASP 804

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L +   ++        +++  + DG   EP       P VLVNG  GI    +T
Sbjct: 805  RYIFTKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVNGSEGIGTAWST 863

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            NI T+N  ++V+G  A+I   +                      G  GI    A  +   
Sbjct: 864  NIETYNPVDIVEGLKALIKGEEAKE-------------FHPWYKGFDGIIERLAPTKWQT 910

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                   IE    D   + ++E+P ++   +  E++ +++  +++    D R+       
Sbjct: 911  KGV----IE--KIDDNTLDISELPIRIWTESFKERLEKMMEAQQVD---DFRENHTDVTV 961

Query: 309  RVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               +++      D     LY   +     S  ++ + +  G   E  T++ ILK F   R
Sbjct: 962  SFTVKMTDKQMKDAEDAGLYDYFKLFKKFSTSNMVLFSEEGGIKEYETVLDILKEFYPIR 1021

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             +   +R +Y+L K +    +L       +  ++E +++ +         +EL  + +++
Sbjct: 1022 LKFYGKRKEYMLEKMKKELEILSNKVRFIMEVINETIQVKKRKK--ADLLKELKTKKYSS 1079

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQ-----TRAILELRLARLTGLGRDDIRNELNS 479
               +  I    D       +      +V         +L + L  LT      +  E   
Sbjct: 1080 FPKEKKIAAAGDIQNEEEEEEEDEEKDVADLTDGYNYLLSMPLWSLTVEKVKKLEKEKEE 1139

Query: 480  LGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELD 513
               E+++  +       LS     L  +       + E D
Sbjct: 1140 KVKEVEQLENTKPETMWLSELDEFLEKLDSYEQKEQKEFD 1179


>gi|108937160|gb|ABG23392.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735130|gb|ACF20074.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+ + Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDRSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|294992611|gb|ADF57432.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|172073094|gb|ACB71404.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 149

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 115/148 (77%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNL 195
             + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|308198967|dbj|BAJ22618.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308198971|dbj|BAJ22620.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199023|dbj|BAJ22646.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199057|dbj|BAJ22663.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 150

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/150 (65%), Positives = 113/150 (75%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
           GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL 
Sbjct: 1   GRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD+S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD
Sbjct: 61  RMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            S  EP VL AR PN+L+NG  GIAVGMAT
Sbjct: 121 DSMSEPDVLPARVPNLLLNGSSGIAVGMAT 150


>gi|294992589|gb|ADF57421.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/168 (52%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLS 168


>gi|192382658|gb|ACF04350.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GR +PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRELPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 140/352 (39%), Gaps = 32/352 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H +            ++  D +    + ++ +    R+IP L DG KP  R++LF   + 
Sbjct: 551 HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKR 609

Query: 64  GVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +K+ VK A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+ 
Sbjct: 610 N---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTR 666

Query: 120 -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
              G   A+ RY    L   A  L   +  + + F  + D    EP       P VL+NG
Sbjct: 667 LHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLING 725

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GI  G A  +P ++  E+V+    ++D  D            P  P      G     
Sbjct: 726 AEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNYKNFKGT---- 771

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
                G+    + G    E    DR  + +TE+P +       E++ E +    +K    
Sbjct: 772 -IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPAL 826

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           I+D ++       + V+++     A      L++   LQ+  + N + L  +
Sbjct: 827 ISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDH 878


>gi|217069473|gb|ACJ83225.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 200

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 108/198 (54%), Positives = 147/198 (74%), Gaps = 1/198 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 1   EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 61  PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE    +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVV
Sbjct: 121 AKTHIE-KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 179

Query: 312 IELKRGASADVILNQLYR 329
           IELKR A ++++LN L++
Sbjct: 180 IELKRDAMSEIVLNNLFK 197


>gi|118132715|gb|ABK60210.1| topoisomerase IV [Shigella boydii]
          Length = 167

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 119/167 (71%), Gaps = 1/167 (0%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  
Sbjct: 1   RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVL 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           MAQ +S R  L++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D+ PN+D
Sbjct: 61  MAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+
Sbjct: 121 GTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 167


>gi|172073090|gb|ACB71402.1| GyrA [Escherichia coli]
          Length = 149

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/148 (62%), Positives = 115/148 (77%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPGVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNL 195
             + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNL 148


>gi|1834401|emb|CAA70292.1| DNA Gyrase subunit A [Chlorobium limicola]
          Length = 148

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/148 (64%), Positives = 115/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+GM ++G++  K + K ARI GEV+GKYHPHG+ A+YD+L RM QD+ 
Sbjct: 1   RDGLKPVHRRVLYGMHELGLQAGKPHKKSARIVGEVLGKYHPHGDTAVYDSLVRMVQDFL 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR  LI+GQGNFGSVDGD PAA RYTE R++  A  +L DL K+TVDF  N+D S +EP 
Sbjct: 61  LRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL A  PN+LVNG  GIAVGMATNIP H
Sbjct: 121 VLPAAIPNLLVNGPSGIAVGMATNIPPH 148


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/530 (20%), Positives = 200/530 (37%), Gaps = 50/530 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG  S++  D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 660  LPERYLYTKGTKSITYADFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 717

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  +  + L+E +G FG+   
Sbjct: 718  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNFVGANNINLLEPRGQFGTRLT 775

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    +D++ + DG   EP+      P VLVNG  
Sbjct: 776  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLDYQVD-DGQKIEPLWYLPIIPMVLVNGAE 834

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E+++    +I+  +               P     LGR    + 
Sbjct: 835  GIGTGWSTKISNYNPREIMNNLRKMINGQE----------PVVMHPWYKNFLGRIEYVS- 883

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
                 G  +  G   I   +    ++ ++E+P  V      E + E +     K    ++
Sbjct: 884  ----DGRYIQTGNLQILHGN----RLEISELPVGVWTQNYKENVLEALSNGTEKVKAVVS 935

Query: 298  DLRDESDRQGYRVVIELKRGAS-----ADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + ++       R VI    G        +   +++++ T+  S   ++    N       
Sbjct: 936  EYKEYHTDTTVRFVISFAPGEFERIRAEEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFP 995

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            T I ILK F   R E   RR  +L+ +   +A  L   A  +       +++  +   + 
Sbjct: 996  TAIDILKEFYKLRREYYARRRDFLVGQLTAQADRLSDQARFILE-KCEKKLVVENKQRKA 1054

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               EL++R +    +K+    I         +              E   A  +   +  
Sbjct: 1055 MCDELLKRGYRPDPVKEWQRRIKMEDAEQADEED-----------DEEEEAAPSVSSKAK 1103

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
               E +      K+  D+      L   +       K+EL   R T++ E
Sbjct: 1104 KEKEADP-EKAFKKLTDVKKFDYLLGMSMWMLTEERKNELLKQRDTKLSE 1152


>gi|217069491|gb|ACJ83234.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 187

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 106/185 (57%), Positives = 141/185 (76%), Gaps = 1/185 (0%)

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG +
Sbjct: 4   RDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLL 63

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIE    ++
Sbjct: 64  YLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIE-KKSNK 122

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++++
Sbjct: 123 DIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIV 182

Query: 324 LNQLY 328
           LN L+
Sbjct: 183 LNNLF 187


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
          Length = 1062

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 190/493 (38%), Gaps = 68/493 (13%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            MT        + +     V + D +    + ++    L R+IP + DG KP  R++++  
Sbjct: 615  MT--AYEPGNQLDHKKPEVPVPDFIDKELILFSRY-DLERSIPSVVDGFKPSQRKVIYSA 671

Query: 61   MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG 118
             +  +  + K  + +    E    +H  G A++   +  +AQD+  S  +  +  +G FG
Sbjct: 672  FKRNLTTDVKVAQFSGYVAEHSAYHH--GEASLQGTIVNLAQDYVGSNNINWLLPEGQFG 729

Query: 119  S--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            S    G   A+ RY   +L      +  D   + + +  + DG   EP       P++LV
Sbjct: 730  SRLQGGKDHASARYIFTKLNPQTRQVFVDTDDNLLKYLYD-DGDKIEPEYYVPVIPSILV 788

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GI  G +TNIP++N  ++VD    +     I  + L+E              G  G
Sbjct: 789  NGSSGIGTGWSTNIPSYNPKDIVDNVKRL-----IAGEDLVE--------MKPWYRGFKG 835

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
                  T     V +G+        + + IVV+E+P         E + + + EK+I  I
Sbjct: 836  --KIEETSPDVYVTKGLY-----MPNGKTIVVSELPIGKWTQDYKEHL-DGLLEKKI--I 885

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            +D R++         I+     + D++     +  +     +++     G   +  T + 
Sbjct: 886  SDFREKHTDTDVLFEIDFIGNPNVDIL-----KLETTIRSTNMHAFDPYGKIKKYDTPLD 940

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD--EVVRIIRFSPNPETAR 414
            I++ +   R+++ V+R  YLL     R ++       +  ++  E++   R   +     
Sbjct: 941  IIREWFGVRKDLYVKRKAYLLEDLTHRTNIAQNKYRFITMVNDGEIIINKRNESDISAEL 1000

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             +L                              Y  + +   +L +R++ LT    ++++
Sbjct: 1001 EKL----------------------------KFYKVDDKYDYLLNMRISSLTLERAEELK 1032

Query: 475  NELNSLGIEIKEC 487
             E   L  E+ + 
Sbjct: 1033 RESVKLEKELDDL 1045


>gi|116876157|gb|ABK30938.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876159|gb|ABK30939.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876163|gb|ABK30941.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735118|gb|ACF20068.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 94/156 (60%), Positives = 115/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHGN++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGNSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|172073092|gb|ACB71403.1| GyrA [Escherichia coli]
          Length = 152

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/152 (61%), Positives = 118/152 (77%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR 
Sbjct: 1   LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + PN+LVNG  GIAVGMATNIP HNL EV++
Sbjct: 121 TKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 152


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/548 (19%), Positives = 185/548 (33%), Gaps = 63/548 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                S    +     +  +D +    + +++   L R+IP + DGLKP  R+ILF   + 
Sbjct: 667  TNFQSGTHLDTEGKYIKYSDFINKELIQFSM-ADLLRSIPSMVDGLKPGQRKILFCSFKR 725

Query: 64   GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD 121
             +    K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG+ D
Sbjct: 726  NLVKEIKVAQFSGYVSEHSAYHH--GEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRD 783

Query: 122  --GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   A+ RY    L      +        +++    DG   EP       P VLVNG 
Sbjct: 784  QGGKDAASARYIFTLLSPITRSIFPKDDDILLNYLDE-DGQSIEPTWYVPILPMVLVNGS 842

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T IP +N  ++V     ++++              P  P      G  G   
Sbjct: 843  EGIGTGWSTFIPNYNPRDIVANLRRLLNDE-------------PVEPMDPWYRGFKGSIQ 889

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI--------------- 284
               T  G +       IE    D   + +TE+P +       E +               
Sbjct: 890  KTGTKAGGVSYTVTGIIEVV--DDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKD 947

Query: 285  ----------AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
                       E   +     I      SD +    +I L +   A  +   L +   L 
Sbjct: 948  KGKGKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLT 1007

Query: 335  SLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +      + L   NG   +  T   ILK F   R E   +R + LL         L    
Sbjct: 1008 TTIGTTNMHLFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKV 1067

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK------DLIDLIDDSSYTIGSDG 445
              +  + E   II  +        EL Q+ ++    K        +  I++      S  
Sbjct: 1068 RFILAVVEG-DIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPE 1126

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
               +       +L + +  LT      +  E   +  E+ E       R+R   +  ++L
Sbjct: 1127 AANVGSSDYEYLLSMAIGTLTLERVQQLIAEKGRMENEVAELK-----RTRPKSLWMRDL 1181

Query: 506  LSVKDELD 513
             + + ELD
Sbjct: 1182 DAFEKELD 1189


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 198/490 (40%), Gaps = 55/490 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  +D +    + ++I     R+IP + DG KP  R++LFG  +  +   K   
Sbjct: 655  DHSIKKLRYSDFINKELIQFSIY-DTERSIPSVIDGFKPGQRKVLFGCFKRNL---KNEC 710

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G +     + HG  ++   +  MAQD+  S  + L+   G FGS    G   AA
Sbjct: 711  KVAQLTGYIAEHSAYHHGENSLQQTIINMAQDYVGSNNINLLLPCGQFGSRKEGGKDAAA 770

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L     ++        +D++ N DG   EP       P VLVNG  GI  G +
Sbjct: 771  ARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTGFS 829

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP++N  +++D  V  +DN D+                         +   Y   +G+
Sbjct: 830  TFIPSYNPIDIIDNIVNFLDNKDM-----------------------NDMIPWYRNFKGT 866

Query: 248  IVIRGVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD--IADLR 300
            +        +            Q+V+TE+P         E +  ++   +  +  I D  
Sbjct: 867  VTRNSKLGYDIIGNYELNHSINQLVITELPINRWTNDYREYLNSIMATNKEDEGYITDYG 926

Query: 301  DESDRQGYRVVIELKR-GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D S  +  ++ I+L   G      + ++++  +  S  ++ +   N    +    I ILK
Sbjct: 927  DFSSNEFIKIKIKLNDSGPDITDDIEKVFKLKTTISTSNMILFDCNKRIKKYNGAIDILK 986

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             F+  R +   +R +Y++ + + +   L      +  +     ++ F  + +    EL +
Sbjct: 987  DFITTRVKYYTKRREYMIKQLQLQLQQLSNQIRFINMIINN-ELVIFRKSKKQIVSELKR 1045

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             ++N    ++  D  D+                    +L++ L  LT    + + NE NS
Sbjct: 1046 LNFNTYKPEEEEDEEDNDIEGFN-------------YLLKMSLLSLTLDHINKLNNEYNS 1092

Query: 480  LGIEIKECLD 489
              +++KE ++
Sbjct: 1093 KQVQLKELIN 1102


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
          Length = 1126

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 162/418 (38%), Gaps = 37/418 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            ++    +S  D +    + ++    L R+IP++ DGLKP  R+I+F   +  +   KK +
Sbjct: 658  DQSAEKISYADFINKELILFSR-ADLDRSIPNVLDGLKPGQRKIMFACFKRNL---KKDI 713

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A++S  V     + HG  ++   +  +AQD+  S  + L+   G FG+    G   A+
Sbjct: 714  KVAQLSAYVAEHSAYHHGEQSLASTIVNLAQDFVGSNNINLLHPSGQFGTRLQGGKDAAS 773

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   RL+K    L ++     + +  N +G   EP       P VLVNG  GI  G +
Sbjct: 774  ARYIYTRLEKLTRHLFNEHDDVLLKYL-NEEGQSIEPEWYLPILPTVLVNGAEGIGTGWS 832

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA--YATGR 245
            T IP +N  +++     +++  + D             P      G TG      + +G 
Sbjct: 833  TFIPNYNPRDIIANLRRLLNGEEQD-------------PLHPWYRGFTGTITEVPHKSGS 879

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDE 302
             S V+ G+            I VTE+P   +  +    LE +     +     IAD  + 
Sbjct: 880  RSYVVGGLV----AQTGPNTIEVTELPVRKWTQDYKEFLETLLRPQDKDEAPLIADYHEH 935

Query: 303  SDRQGYRVVIELKRGASADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
                    V+EL  G   +++     L   ++  +  +  ++ +   +G      +   I
Sbjct: 936  HSDSNVHFVVELLPGKLDELLATPGGLEAKFKLQAKVTTSNMMLFQKDGIIKHYQSPEAI 995

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +  F   R +   +R   +L  A+            +  +      +R     +  + 
Sbjct: 996  IAEFFELRLDYYEKRRIAMLRFAQMDQMRADNKVRFILAVVHGKLEVRNRKRVDIEKD 1053


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 107/521 (20%), Positives = 211/521 (40%), Gaps = 47/521 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  +D +    + ++I     R+IP + DG KP  R++LFG  +  +   K   
Sbjct: 655  DHSIKKLRYSDFINKELIQFSIY-DTERSIPSVIDGFKPGQRKVLFGCFKRNL---KNEC 710

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G +     + HG  ++   +  MAQD+  S  + L+   G FGS    G   AA
Sbjct: 711  KVAQLTGYIAEHSAYHHGENSLQQTIVNMAQDFVGSNNINLLLPCGQFGSRKEGGKDAAA 770

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L     ++        +D++ N DG   EP       P VLVNG  GI  G +
Sbjct: 771  ARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTGFS 829

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T IP++N  +V+D  V  +DN D++                       G        R +
Sbjct: 830  TYIPSYNPIDVIDNIVNFLDNKDMND-------------MIPWYRNFKG-----TVTRNT 871

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD--IADLRDESDR 305
             +   ++   + +    Q+V+TE+P         E +  ++   +  +  I D  D S  
Sbjct: 872  KLGYDITGKYELNHSLNQLVITELPVNRWINDYREFLNSIMVTNKEDEGYITDYGDYSSN 931

Query: 306  QGYRVVIELKR-GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            +  ++ I+L   G      + ++++  +     ++ +   N    +    I ILK F+  
Sbjct: 932  EDIKIKIKLNDSGPDITDDIEKVFKLKTTIPTSNMILFDCNKRIKKYNGAIDILKDFITT 991

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R +   +R +Y++ + + +   L      +  +     ++ F  + +    EL + ++N 
Sbjct: 992  RVKYYSKRREYMIKQLQLQLQQLSNQIRFINMIINN-ELVIFRKSKKQIVSELKRLNFNT 1050

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               ++  D  D+                    +L++ L  LT    + + NE NS  + +
Sbjct: 1051 YKQEEEEDEEDNDIEGFN-------------YLLKMSLLSLTLDHINKLNNEYNSKQVLL 1097

Query: 485  KECLDI--LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
            KE ++   +    + L ++K +L+         +R +I   
Sbjct: 1098 KELINTTPIQLYKKDLSVLKDQLIQTNQYRPYEKRVKIQPE 1138


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 169/454 (37%), Gaps = 36/454 (7%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   EK   +V+  D +    + ++ N+   R+I  + DGLKP  R++LF  ++
Sbjct: 667  EAGLAEEYLYEKNTRTVTYKDFVNKELVLFS-NMDNERSIASVVDGLKPGSRKVLFTCIK 725

Query: 63   MGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ +K A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+
Sbjct: 726  RN---DKREIKVAQLAGSVAEHSAYHHGEVSLMSTIVNLAQNYVGSNNINLLQPIGQFGT 782

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY    L      +        + +  + D    EPV      P VLVN
Sbjct: 783  RLQGGKDAASPRYIFTMLSPLTRLIFHPHDDPLLTYLRD-DNQKIEPVWYMPIIPMVLVN 841

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G  T IP HN  EV+     ++   D            P  P      G    
Sbjct: 842  GAEGIGTGWMTKIPNHNPREVISNIKRMLRGED----------PLPMKPWYKNFTGHIEK 891

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIV 294
             +           + +S  E       ++ +TE+P  V      E + E +    EK   
Sbjct: 892  LS---------EQKFISSGELGVIGHNRVEITELPVGVWTQNYKESVLEPMLTDTEKSPA 942

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ER 351
             I D ++ +     + VI +            ++++  L +   +  +          + 
Sbjct: 943  VITDYKEYNTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCAFDKDCVLKKY 1002

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
                 IL+ F A R +   +R  YL       A  L   A  +        +   +    
Sbjct: 1003 EATQQILREFYAVRLDFYGKRKAYLEGMLGAEAAKLTNQARFIVE-KCDGDLRIENRKKS 1061

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
               +EL++R +N+  +K    + D  S  +    
Sbjct: 1062 EMVKELVRRGYNSDPVKAWKLIQDRESVLLDEAQ 1095


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/548 (19%), Positives = 185/548 (33%), Gaps = 63/548 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                S    +     +  +D +    + +++   L R+IP + DGLKP  R+ILF   + 
Sbjct: 629  TNFQSGTHLDTEGKYIKYSDFINKELIQFSM-ADLLRSIPSMVDGLKPGQRKILFCSFKR 687

Query: 64   GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD 121
             +    K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG+ D
Sbjct: 688  NLVKEIKVAQFSGYVSEHSAYHH--GEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRD 745

Query: 122  --GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   A+ RY    L      +        +++    DG   EP       P VLVNG 
Sbjct: 746  QGGKDAASARYIFTLLSPITRSIFPKDDDILLNYLDE-DGQSIEPTWYVPILPMVLVNGS 804

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T IP +N  ++V     ++++              P  P      G  G   
Sbjct: 805  EGIGTGWSTFIPNYNPRDIVANLRRLLNDE-------------PVEPMDPWYRGFKGSIQ 851

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI--------------- 284
               T  G +       IE    D   + +TE+P +       E +               
Sbjct: 852  KTGTKAGGVSYTVTGIIEVV--DDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKD 909

Query: 285  ----------AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
                       E   +     I      SD +    +I L +   A  +   L +   L 
Sbjct: 910  KGKGKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLT 969

Query: 335  SLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +      + L   NG   +  T   ILK F   R E   +R + LL         L    
Sbjct: 970  TTIGTTNMHLFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKV 1029

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK------DLIDLIDDSSYTIGSDG 445
              +  + E   II  +        EL Q+ ++    K        +  I++      S  
Sbjct: 1030 RFILAVVEG-DIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPE 1088

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
               +       +L + +  LT      +  E   +  E+ E       R+R   +  ++L
Sbjct: 1089 AANVGSSDYEYLLSMAIGTLTLERVQQLIAEKGRMENEVAELK-----RTRPKSLWMRDL 1143

Query: 506  LSVKDELD 513
             + + ELD
Sbjct: 1144 DAFEKELD 1151


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 106/562 (18%), Positives = 194/562 (34%), Gaps = 59/562 (10%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
             +     ++  T +SI+D +    + +++     R+IP L DGLKP  R+++F   +  +
Sbjct: 630  FAPGTFLDQSQTQISISDFVNKELILFSM-ADNIRSIPSLVDGLKPGQRKVIFSCFKRNL 688

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
                  +K A++ G V     + HG  ++   +  +AQD+  S  + L+   G FGS   
Sbjct: 689  RSE---IKVAQLVGYVSEQSAYHHGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQ 745

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L      + ++     +++  N D    EP       P VLVNG  
Sbjct: 746  GGKDAASPRYIFTSLSPLTRMIFNENDDAILNYL-NDDNFSIEPEFYVPIIPMVLVNGAE 804

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T+IP  N  +VV+    +I   D               P   V   R      
Sbjct: 805  GIGTGWSTSIPNFNPVDVVENIRRMIRGED---------------PVEMVPYYRNFRGTI 849

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G G   + G+            + +TE+P         E +  LV+        D +
Sbjct: 850  EKIGEGKFQVSGIYE------GDMDLEITELPVGTWTLNYKEFLESLVQAGV---ARDFK 900

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +    +     ++L +  S         +  S  ++ ++     N    +  T   ILK 
Sbjct: 901  EYHTEKTVSFTVKLSKPVSN-------LKLNSTITVNNMVCFDENLRIKKYATPQEILKE 953

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R    + R + +L   R+    L      +  +     ++           +L  R
Sbjct: 954  FYGVRLRYYLIRKENMLKVMREELEKLENKVRFIKEVSMG-ELVISRRRKGEVIFDLESR 1012

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNE-- 476
             +            DD  Y + S   + L+  +   +      RL+   +       E  
Sbjct: 1013 GY---------ARADDYEYLL-SMSILSLTVERIERLSNEHAKRLSEYNQLMGKTPKELW 1062

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR-RTRIVEGLLDMEDEDCIVR 535
            L  L +  KE L I  + +R           +K +   P+ R+ I +     +       
Sbjct: 1063 LEDLEVFEKEYLRIAENEAREYDDELNGC--IKKKGKRPKSRSGISDRQKKAKVTRKPRS 1120

Query: 536  EDMVVTVSHLGYVKRVPLSVYR 557
              +   ++     +  P   Y 
Sbjct: 1121 LPVTEHLTDSETSQEKPWKKYN 1142


>gi|161511945|emb|CAP45392.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 114/147 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 67

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIP 191
            V+  + PN+LVNG  GIAVGMATN  
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNFL 154


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/530 (20%), Positives = 200/530 (37%), Gaps = 51/530 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       KG   VS +D +    + ++ N    R+IP L DGLKP  R+++F   +   
Sbjct: 677  LPERYLYTKGTKQVSYSDFINLELVLFS-NADNERSIPSLVDGLKPGQRKVMFTCFKRN- 734

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A++SG V     + HG  ++   +  +AQ++  S  + L+E +G FG+   
Sbjct: 735  --DKREVKVAQLSGSVAEMSAYHHGEVSLQMTIVNLAQNYVGSNNINLLEPRGQFGTRLT 792

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    + ++   DG   EP+      P VLVNG  
Sbjct: 793  GGKDCASARYIFTLMSPLTRLIYHPLDDPLLQYQ-TDDGQRIEPLWYIPIIPMVLVNGAE 851

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T I  +N  E+++    +I+      + L+        P      G     N 
Sbjct: 852  GIGTGWSTKIANYNPRELINNLRRMINGE----EPLLMH------PWYKNFTGNMDYVN- 900

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIA 297
                 G  V  G  +I+  S +R  I +TE+P  V      E + E +     K    ++
Sbjct: 901  ----DGRYVHSG--NIQMLSDNR--IEITELPIGVWTQTYKENVLEALSNGTEKVKAIVS 952

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + R+       R V+    G      S +   +++++ +S  S   ++    +       
Sbjct: 953  EYREFHTDTTVRFVVSFNPGEFERLRSENGGFHRVFKLSSSISTNQMHAFDDSNCLRRFS 1012

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   IL  F   R E   RR  YL+ +   +A  L   A  +       +++  +   + 
Sbjct: 1013 SPKDILLEFYKLRLEYYNRRKDYLVGQLTAQADRLSDQARFILE-KCEKKLVVENKQRKV 1071

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               EL++R +    +K+    I                E                     
Sbjct: 1072 MIDELIKRGYRPDPVKEWQRRIKIEEAETADAEEEEDEETGASG------------SGKK 1119

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            ++ EL+      ++  ++      L   +       K+EL   R T+++E
Sbjct: 1120 VKKELDP-EKAFQKLTEVKKFDYLLGMSMWMLTEERKNELLKQRDTKLIE 1168


>gi|77166864|gb|ABA62408.1| DNA gyrase subunit A [Simkania negevensis]
          Length = 152

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/152 (53%), Positives = 111/152 (73%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
             DEM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+LF M Q+ +    K+ KCA+I G+
Sbjct: 1   FEDEMKESYLRYSMSVIISRALPDVRDGLKPSQRRVLFAMRQLNLSPGAKHRKCAKICGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
             G YHPHG   IY  L RMAQDW +   L++GQGNFGS+DGDPPAA RYTE RL +A+ 
Sbjct: 61  TSGDYHPHGETVIYPTLVRMAQDWVMGYCLVQGQGNFGSIDGDPPAAMRYTEARLTRASM 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            L++DL K+TV++ PNY+ + QEP V  +++P
Sbjct: 121 ALMEDLDKETVEYVPNYNETKQEPTVFPSKFP 152


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 176/434 (40%), Gaps = 38/434 (8%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   ++S  D +    + ++ +  + R+IP + DGLKP  R+++F   +     +K+ VK
Sbjct: 691  KTTKAISYKDFVNLELVLFSNSDNV-RSIPCMLDGLKPGQRKVMFTCFKRN---DKREVK 746

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
             A+++G V     + HG  ++   +  +AQ++  S  + L+   G FG+    G   A+ 
Sbjct: 747  VAQLAGSVAEMSAYHHGEQSLCSTIINLAQNFVGSNNINLLYPGGQFGTRLTGGKDSASP 806

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L      +   L    ++++   D    EPV      P +LVNG  GI  G +T
Sbjct: 807  RYIFTMLSTLTRLIFHPLDDPLLEYQYE-DNQRIEPVWYLPIIPMLLVNGAEGIGTGWST 865

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP HN  +V+     +++  +         +  P +     ++   G +     G  ++
Sbjct: 866  KIPNHNPRDVIANIRRMLNGEEPK-------VLNPWYKNFRGLVESVGHQKYLTVGNVAL 918

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            +            D ++I ++E+P         E + E +    +K+   I+D ++ +  
Sbjct: 919  L------------DGQKIEISELPIGTWTQTYKENVLEPLLHGSDKQKAVISDYKEYNTD 966

Query: 306  QGYRVVIELKRGASA-----DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
               R V+    G  A     +   ++L++ TS  S  S+N      Y         I + 
Sbjct: 967  TTVRFVVSFLPGEYAKLYAEEGGFHRLFKLTSSISTSSMNAFDDKNYLKRYDHANSIFQD 1026

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R E   +R +YLL   +  A  +   A  +       ++   +   +    E+++R
Sbjct: 1027 FYTIRLEYYGKRREYLLGMLQAEADSMSDKARFIME-KCSGQLTVENKKRKALIEEMIKR 1085

Query: 421  SWNASDIKDLIDLI 434
             +    IK+    +
Sbjct: 1086 GYRPDPIKEWKRRV 1099


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/548 (19%), Positives = 186/548 (33%), Gaps = 63/548 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                S    +     +  +D +    + +++   L R+IP + DGLKP  R+ILF   + 
Sbjct: 629  TNFQSGTHLDTEGKYIKYSDFINKELIQFSM-ADLLRSIPSMVDGLKPGQRKILFCSFKR 687

Query: 64   GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD 121
             +    K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG+ D
Sbjct: 688  NLVKEIKVAQFSGYVSEHSAYHH--GEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRD 745

Query: 122  --GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   A+ RY    L      +        +++    DG   EP       P VLVNG 
Sbjct: 746  QGGKDAASARYIFTLLSPITRSIFPKDDDILLNYLDE-DGQSIEPTWYVPILPMVLVNGS 804

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T IP +N  ++V     ++++              P  P      G  G   
Sbjct: 805  EGIGTGWSTFIPNYNPRDIVANLRRLLNDE-------------PVEPMDPWYRGFKGSIQ 851

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI--------------- 284
               T  G +       IE    D   + +TE+P +       E +               
Sbjct: 852  KTGTKAGGVSYTVTGIIEVV--DDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKD 909

Query: 285  ----------AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
                       E   +     I      SD +    +I L +   A  +   L +   L 
Sbjct: 910  KGKGKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLT 969

Query: 335  SLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +      + L   NG   +  T   ILK F   R E   +R + LL         L    
Sbjct: 970  TTIGTTNMHLFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKV 1029

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK------DLIDLIDDSSYTIGSDG 445
              +  + E   II  +        EL Q+ ++    K        +  I++      S  
Sbjct: 1030 RFILAVVEG-DIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPE 1088

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
               +       +L + +  LT      +  E + +  E+ E       R+R   +  ++L
Sbjct: 1089 AANVGSSDYEYLLSMAIGTLTLERVQQLIAEKSRMENEVAELK-----RTRPKSLWMRDL 1143

Query: 506  LSVKDELD 513
             + + ELD
Sbjct: 1144 DAFEKELD 1151


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 189/498 (37%), Gaps = 47/498 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +    ++  +D +    + +++     R+IP + DGLKP  R++LF   +  ++   K  
Sbjct: 706  DHATDAICYSDFINKELILFSM-ADNVRSIPSIMDGLKPGQRKVLFSCFKRKLKDEIKVA 764

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAE 128
            + A    E    +H  G  ++   +  MAQ +    +L LLL  GQ       G   A+ 
Sbjct: 765  QLAGYVSEHSAYHH--GEMSLAGTIVGMAQRFVGSNNLNLLLPIGQFGTRLAGGKDAASS 822

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L   A  +        ++   + DG   EP       P VLVNG  GI  G ++
Sbjct: 823  RYIFTSLSPLARKIFHLADDALLNHLED-DGQTIEPEFYAPILPMVLVNGSDGIGTGWSS 881

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            ++P +N  ++V+  +A+I+    + D L      P +      +   G K+ YA  RG++
Sbjct: 882  SVPNYNPRDLVNALIAMIEGQ--EPDEL-----HPWYAGFTGEITPKG-KDKYAV-RGTL 932

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE--KRIVDIADLRDESDRQ 306
                 + IE          ++E+P +       E +  L  +  K+   I +        
Sbjct: 933  KKLDETTIE----------ISELPIRTWTQPYKEFLEGLAADDGKKPPQILEFSQYHTDT 982

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVA 363
              R V+ +            LY+   L+   S + + L    G   +   +  IL+ F  
Sbjct: 983  TVRFVVSMTPEQMQAAETKGLYKVFKLEGSISTSNMTLFDPQGRIKKYEGVQEILRDFFD 1042

Query: 364  FREEVVVRR---------TKYLL--NKARDRAHVLVG-LAIAVANLDEVVRIIRFSPNPE 411
             R  +  +R         ++Y    NK R    V+ G L I+     ++++ +R      
Sbjct: 1043 VRLRLYQKRKSLLADCMTSEYKKMDNKVRFILDVISGSLVISNRKKADILQELRAKGF-- 1100

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             A     +    A  + DL D    +  +   D  +  S      +L + +  LT    D
Sbjct: 1101 -AAFPKPKGKKGAKTVGDLDDDAAGAPPSSDEDEALEESASDFDYLLSMPMWNLTMERVD 1159

Query: 472  DIRNELNSLGIEIKECLD 489
             +  E N    E+   L+
Sbjct: 1160 KLTEERNGTEAELNALLE 1177


>gi|224178753|ref|XP_002198897.1| PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603,
           partial [Taeniopygia guttata]
          Length = 424

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/429 (27%), Positives = 185/429 (43%), Gaps = 57/429 (13%)

Query: 7   SSDEEEEKGITSVS-------ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            +D  + K I   S       +    Q+ +L YA  VIL RA+P++ DGLKPV RRIL  
Sbjct: 26  HADNFDPKIIVDTSNDTIRHQLRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHS 85

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF-G 118
           M  +    + ++ K A I G  M  +HPHG+A+IY+AL ++ Q    + LL+E QGN+  
Sbjct: 86  MKLLD---DGRFNKVANIVGNTMQ-FHPHGDASIYEALVQLGQ----KELLVETQGNWGN 137

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++ G   AA RY E RL + A           V + P           L           
Sbjct: 138 TLTGAGAAAGRYIEARLSQFA---------LDVVYNP-----KVTEWTL----------S 173

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG+++ I  HN  E++D  ++ +      L         PDF TG  I       
Sbjct: 174 AEGIAVGLSSKILPHNFNEIIDAAISYLRGEPFTL--------YPDFFTGGSI-----DV 220

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y  G    V++  + IE    D + + +TEIPY    A ++E I +     +I     
Sbjct: 221 SRYNDGERGGVVKIRAKIE--KIDNKTLAITEIPYGKTTATLIESIVKAQEAGKIKI--R 276

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
              ++  Q   V++ L  G S+D  ++ LY +T  +   S N   ++  KP    +  +L
Sbjct: 277 SVVDNTAQTANVIVYLLPGTSSDKTIDALYAFTDCEVSVSPNCCVISDNKPHFIGVSDVL 336

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +  V    +++ +  +  L + R++ H      I +       +    S N E A   + 
Sbjct: 337 RHNVDRTRDILGQELRIQLGEVREQLHFASLERIFIEERIYKDKGYEESENREQAIAHIR 396

Query: 419 QRSWNASDI 427
            R     DI
Sbjct: 397 GRLEKFKDI 405


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 193/523 (36%), Gaps = 60/523 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   +K   +VS  D +    + ++ N+   R+IP L DGLKP  R++LF   +
Sbjct: 675  EQGLTEEYLYDKDTHTVSFKDFVNKELVLFS-NLDNERSIPSLVDGLKPGQRKVLFTCFK 733

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G A++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 734  RADKKEVKVAQLAGAVGEMSAYHH--GEASLMATIINLAQDYVGSNNINLLLPIGQFGTR 791

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   + +  + F    +   +         P VLVNG
Sbjct: 792  LQGGKDSASPRYIFTQLNPVTKALFPSVDESVLRFLYEENQRIEPEWYCP-IIPTVLVNG 850

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI    +T +P +N  E+V+    +I                   P      G     
Sbjct: 851  AEGIGTAWSTKVPNYNPREIVENIRLMIRGEQ----------PRHMVPWFKNFRGTIEQM 900

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
            +           R V   E        I +TE+P +       E + E +    +K+   
Sbjct: 901  D---------ENRFVCSGEIAIIGEGTIEITELPIRTWTQTYKESVLEPMLDGSDKQPAM 951

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERF 352
            I D ++       + ++++         +  L++   LQ++ +   + L    G      
Sbjct: 952  ITDFKEYHTDTTVKFLVKMTPEKLRAAQMEGLHKVFKLQTVINTTSMVLFDAMGCLRRFN 1011

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T+  I   F   R++  + R  + +           N+AR     + G  +        +
Sbjct: 1012 TVEEICTDFFETRKKKYIERKAFQMGMLRAQSQRLSNQARFILAKIKGEILIENKRKLVI 1071

Query: 398  DEVVRIIRFSPNPETARRELMQR----------SWNASDIKDLIDLIDDSSYTIGSDGTM 447
             E +  + F P+P    +E  +R               + +   +  +++S   G D   
Sbjct: 1072 VEQLVKMGFDPDPVKKWKEAQKRKELEATGEVIPDEDEENESENEENEEASTPQGKDLER 1131

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             LS+     ++ + + +L+   +D +  E  +   E+K   ++
Sbjct: 1132 KLSDY--DYLVGMAIMKLSTEEKDKLLRESEAKMEELKALEEM 1172


>gi|36988470|gb|AAQ87913.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 145

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 85/145 (58%), Positives = 114/145 (78%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PN
Sbjct: 61  IVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGG 181
           YDG+   P V+  + P +LVNG  G
Sbjct: 121 YDGTEMIPAVMPTKVPTLLVNGSSG 145


>gi|47834514|gb|AAT38944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 169

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 103/167 (61%), Positives = 129/167 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 122

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           AVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFPT A
Sbjct: 123 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA 169


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 182/491 (37%), Gaps = 34/491 (6%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            I  D   +  + +++ +D +    + +       RAIP + DGLKP  R++L+   + G+
Sbjct: 996  IPKDWFVDYTVKNLTYSDFVDKELVQF-CRAANARAIPSVVDGLKPGQRKVLYASFKRGL 1054

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
                K  + A    E    +H  G  +++  +  MAQD+  +  L L+   G FG+    
Sbjct: 1055 TQEMKVAQLAGYVAEHTAYHH--GEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQG 1112

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L      +  DL    +++    DG   +P       P VLVNG  G
Sbjct: 1113 GKDAASARYIFTKLAPLTRTIFPDLDDPVLNYL-EGDGDRIQPEFFAPIIPMVLVNGSEG 1171

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            + +G  T+IP +N   ++D  + ++ N              P  P      G  G  +  
Sbjct: 1172 LGMGWRTSIPMYNPTNLIDNLLRLLHNE-------------PMEPLTPWYKGFKG--SVE 1216

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLR 300
             T   +    GV  IE T  +     ++E+P +       E +   V+ ++    + D  
Sbjct: 1217 LTPPFTFKTYGV--IEPTKKEH-IFKISELPVRKWTNDYKELLTTYVKPEKGKPTLKDFS 1273

Query: 301  DESDRQGYRVVIELKRGASADVILNQ---LYRYTSLQSLFSVNMV--ALNGYKPERFTLI 355
            + +  Q     +   RGA A  I      L +   L+S F + MV    +G   E    +
Sbjct: 1274 EYNTDQKVDFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPL 1333

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             I++ F   R E   +R      K  +     +G  +    L     +  F  +    R+
Sbjct: 1334 DIIRDFFEVRMEYYAKRKAAR-EKVLENEAKRLGDKLKFVKLVISGSLKLFGRSKAELRQ 1392

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            +L++          L   +DD +                  + E R      +   ++R 
Sbjct: 1393 DLVKSGLGNGYENLLSIALDDLTKEKTEQLAHAKQRKDAE-LAETRRTSAAAMWEHELRA 1451

Query: 476  ELNSLGIEIKE 486
              + L    ++
Sbjct: 1452 LRDKLDKAHEK 1462


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 189/498 (37%), Gaps = 47/498 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +    ++  +D +    + +++     R+IP + DGLKP  R++LF   +  ++   K  
Sbjct: 672  DHATDAICYSDFINKELILFSM-ADNVRSIPSIMDGLKPGQRKVLFSCFKRKLKDEIKVA 730

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAE 128
            + A    E    +H  G  ++   +  MAQ +    +L LLL  GQ       G   A+ 
Sbjct: 731  QLAGYVSEHSAYHH--GEMSLAGTIVGMAQRFVGSNNLNLLLPIGQFGTRLAGGKDAASS 788

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L   A  +        ++   + DG   EP       P VLVNG  GI  G ++
Sbjct: 789  RYIFTSLSPLARKIFHLADDALLNHLED-DGQTIEPEFYAPILPMVLVNGSDGIGTGWSS 847

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            ++P +N  ++V+  +A+I+    + D L      P +      +   G K+ YA  RG++
Sbjct: 848  SVPNYNPRDLVNALIAMIEGQ--EPDEL-----HPWYAGFTGEITPKG-KDKYAV-RGTL 898

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE--KRIVDIADLRDESDRQ 306
                 + IE          ++E+P +       E +  L  +  K+   I +        
Sbjct: 899  KKLDETTIE----------ISELPIRTWTQPYKEFLEGLAADDGKKPPQILEFSQYHTDT 948

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVA 363
              R V+ +            LY+   L+   S + + L    G   +   +  IL+ F  
Sbjct: 949  TVRFVVSMTPEQMQAAETKGLYKVFKLEGSISTSNMTLFDPQGRIKKYEGVQEILRDFFD 1008

Query: 364  FREEVVVRR---------TKYLL--NKARDRAHVLVG-LAIAVANLDEVVRIIRFSPNPE 411
             R  +  +R         ++Y    NK R    V+ G L I+     ++++ +R      
Sbjct: 1009 VRLRLYQKRKSLLADCMTSEYKKMDNKVRFILDVISGSLVISNRKKADILQELRAKGF-- 1066

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             A     +    A  + DL D    +  +   D  +  S      +L + +  LT    D
Sbjct: 1067 -AAFPKPKGKKGAKTVGDLDDDAAGAPPSSDEDEALEESASDFDYLLSMPMWNLTMERVD 1125

Query: 472  DIRNELNSLGIEIKECLD 489
             +  E N    E+   L+
Sbjct: 1126 KLTEERNGTEAELNALLE 1143


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1061

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 190/491 (38%), Gaps = 64/491 (13%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            MT        + +     V + D +    + ++    L R+IP + DG KP  R++++  
Sbjct: 615  MT--AYEPGNQLDHKKPEVPVPDFIDKELILFSRY-DLERSIPSVVDGFKPSQRKVIYSA 671

Query: 61   MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG 118
             +  +  + K  + +    E    +H  G A++   +  +AQD+  S  +  +  +G FG
Sbjct: 672  FKRNLTTDVKVAQFSGYVAEHSAYHH--GEASLQGTIVNLAQDYVGSNNINWLLPEGQFG 729

Query: 119  S--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            S    G   A+ RY   +L      +  D   + + +  + DG   EP       P++LV
Sbjct: 730  SRLQGGKDHASARYIYMKLNPQTRQVFVDTDDNLLKYMYD-DGDKIEPEYYVPVIPSILV 788

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GI  G +TNIP++N  ++VD    +     I  + L+E              G  G
Sbjct: 789  NGSSGIGTGWSTNIPSYNPKDIVDNVKRL-----ISGEDLVE--------MKPWYKGFKG 835

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
                  T  G  V +G+        + + IVV+E+P         E + + + EK+I  I
Sbjct: 836  --KIMETSPGVYVTKGLY-----MPNGKTIVVSELPIGKWTQDYKEHL-DGLLEKKI--I 885

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            +D R++         I+     + D++     +  +     +++    +G   +  T + 
Sbjct: 886  SDFREKHSDTDVLFEIDFVGNPNIDIL-----KLETTIRSTNMHAFDPSGKIKKYDTPLD 940

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            I++ +   R+++ V+R  YLL     R ++       +  ++    II    +      E
Sbjct: 941  IIREWFGVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNND-EIIINKKHESVISAE 999

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            L                              Y  + +   +L +R++ LT    ++++ E
Sbjct: 1000 L-------------------------EKLKFYKVDDKYDYLLNMRISSLTLERAEELKRE 1034

Query: 477  LNSLGIEIKEC 487
               L  E+ + 
Sbjct: 1035 SVKLEKELDDL 1045


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 104/499 (20%), Positives = 195/499 (39%), Gaps = 42/499 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             V+ITD + N  + ++ N    R+IP + DGLKP  R+ILF  ++  ++   K  + A  
Sbjct: 667  KVTITDFINNELILFS-NQNNIRSIPSIVDGLKPSQRKILFACLKRDLKDEIKVAQLAGY 725

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
              E    +H  G  ++Y  +  MAQD+  +  + L+   G FG+    GD  A+ RY   
Sbjct: 726  VSEHSAYHH--GEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIYT 783

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            RL K    +        +D++   DG   EP       P +LVNG  G+  G +T+IP+ 
Sbjct: 784  RLNKLTRLIFLKEDDQILDYQ-EEDGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSF 842

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            N  +++D    ++D         +  ++ P         G  G         G  + +G+
Sbjct: 843  NPIDLIDSLNILLD----SNAENIGNVKLPSL--DMWARGFKG--KIEMNDSGKFISKGI 894

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              + K+ GD  +  ++E+P           +  LV++  I      R+  +  G+ + I 
Sbjct: 895  FKM-KSRGDSIEFDISELPIGEWTENYKSHLQSLVKKGLIKSKITERNTENSVGFTIAIN 953

Query: 314  LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
                  ++  L +L +     SL ++ + + N    +   +  I+K F   R     +R 
Sbjct: 954  -DPDEFSESQLKKL-KLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSYYHQRK 1011

Query: 374  KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
             +L+ +   +  +L      +  +           N       +  +  N       +  
Sbjct: 1012 SHLMKQLEKQIRILSNKVKFLNFIT---------SNESNLNTFIKTKKENIPSFLTNVVG 1062

Query: 434  IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
            I     TI               + ++ +  LT   +D I      L    +E   + S 
Sbjct: 1063 IVVDPTTIEQSFNY---------LTDMNILSLTHEHKDRIN---KQLESAQQELQQVSSD 1110

Query: 494  RSRLLGIIKQELLSVKDEL 512
              +L+   K++L  ++DEL
Sbjct: 1111 DPKLM--WKRDLKRLRDEL 1127


>gi|217069485|gb|ACJ83231.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 202

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 148/199 (74%), Gaps = 1/199 (0%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 61  PPHSLNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKV 120

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RV
Sbjct: 121 RAKTHIE-KRANKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRV 179

Query: 311 VIELKRGASADVILNQLYR 329
           VIELKR A ++++LN L++
Sbjct: 180 VIELKRDAMSEIVLNNLFK 198


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 88/486 (18%), Positives = 179/486 (36%), Gaps = 48/486 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
               +  + I+D +    + +++     R+IP + DGLKP  R+I++G  +  +   KK +
Sbjct: 739  NHDVDEIPISDFINKELILFSM-ADNIRSIPSVADGLKPGQRKIIWGCFKRKL---KKEI 794

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAA 127
            K A++ G V     + HG  ++   +  +AQD+    ++ LL+  GQ       G   AA
Sbjct: 795  KVAQLVGYVSEHAAYHHGEQSLTMTIVNLAQDYVGSNNINLLMPNGQYGTRDQGGKDHAA 854

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L      L +   +  +  +   D    EP       P VLVNG  GI  G +
Sbjct: 855  ARYIFTELSPLTRSLFNTADEPLLK-QQKEDNQPVEPEYYMPIIPMVLVNGADGIGTGWS 913

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP++N  ++V     ++D  +               P      G  G     +TG+  
Sbjct: 914  TSIPSYNPTDIVANIRRLMDGEEQ-------------VPMFPWWRGFNG--EIKSTGKNK 958

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
              + G++       +  Q+ +TE+P          ++  ++  ++        +  D   
Sbjct: 959  YDVTGIAR----KLNDTQVEITELPIHKWTQNFKAELETMMVSEKGE-APTYTEHHDNTN 1013

Query: 308  YRVVIEL---KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               +I +   +   + +    + ++ TS  S  ++     +G   +  +   I++ F   
Sbjct: 1014 VHFIITMSATELKKAEEQGFVEYFKLTSKISTANMIAFNFDGKITKYDSPEEIVEEFYPQ 1073

Query: 365  REEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVANLDEVV----RIIRFSPN 409
            R     +R  Y           L N+AR    ++    I        +    R   F P 
Sbjct: 1074 RLMYYQKRKDYLADELQVQLSRLNNQARFIQMIVDRQLIVSNRKKVDIVADLRKHDFRPF 1133

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            P+ A+ +         + ++  +   D       +     S+ +   +  L       + 
Sbjct: 1134 PKIAKAKEAGEDEPTVEQEEEEEEDIDDDKNAHIERLRKQSQDKEEELNTLLAKSPKQMW 1193

Query: 470  RDDIRN 475
             +D+ +
Sbjct: 1194 NEDLDD 1199


>gi|330939843|gb|EGH43077.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 173

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 76/164 (46%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K
Sbjct: 10  DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLGADAKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 70  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+
Sbjct: 130 ARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILL 173


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 101/490 (20%), Positives = 174/490 (35%), Gaps = 46/490 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   +S+S  D +    + ++      R+IP L DG KP  R++LF  ++  ++   K  
Sbjct: 740  DHNASSLSYADFVNKELILFSRY-DTERSIPQLVDGWKPGQRKVLFACIKKNMKHEIKVA 798

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    EV   +H  G A++   +  MAQ +  S  L  +E  G FGS    G   +A 
Sbjct: 799  QLAGYVAEVSAYHH--GEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAA 856

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   RL      +  +     +++    +G   EP +     P VL+NG  GI  G ++
Sbjct: 857  RYIFTRLAFYTRLVFHEADDPILEY-EYEEGQRIEPKMYVPVIPTVLINGSEGIGTGWSS 915

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             +P +N  +V++     ID  ++                     G  G     + G G  
Sbjct: 916  FVPNYNPRDVIENLRRYIDGEEMQR-------------MTPWYRGFRGKIEENSAGTG-F 961

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQ 306
               G+              +TE+P +       E + E     EKR   IAD RD S  +
Sbjct: 962  ETSGLVE----KCGEGAFEITELPIKKWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHE 1017

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVA 363
                 +++            L +Y  L++  S   + L   +G        + I+K F  
Sbjct: 1018 EIHFTVKVSEERLERPEREGLEKYFKLKTSLSTTNLTLFDPHGRVQRYANELEIIKEFAP 1077

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R +   RR  Y L        +L      +  +     II              Q    
Sbjct: 1078 IRLDFYHRRKAYCLAMLEKSRRILSNRLRFILAVVNGQLIINNKRKKVLVEELFSQGYDP 1137

Query: 424  ASDIKDLID-----------LIDDSSYTIGSDGTM----YLSEVQTRAILELRLARLTGL 468
              +I+D  +            +DD +   G +         +      +L + +  LT  
Sbjct: 1138 MKEIEDAANAGIRAALKRDIAVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWSLTLE 1197

Query: 469  GRDDIRNELN 478
              +D+R E+ 
Sbjct: 1198 KVEDLRGEMR 1207


>gi|149346166|gb|ABR23654.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 143

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 113/143 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNYDG+
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIA 183
              P V+  + PN+LVNG  GIA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIA 143


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 193/523 (36%), Gaps = 60/523 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   +K   +VS  D +    + ++ N+   R+IP L DGLKP  R++LF   +
Sbjct: 675  EQGLTEEYLYDKDTHTVSFKDFVNKELVLFS-NLDNERSIPSLVDGLKPGQRKVLFTCFK 733

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G A++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 734  RADKKEVKVAQLAGAVGEMSAYHH--GEASLMATIINLAQDYVGSNNINLLLPIGQFGTR 791

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   + +  + F    +   +         P VLVNG
Sbjct: 792  LQGGKDSASPRYIFTQLNPVTKALFPSVDESVLRFLYEENQRIEPEWYCP-IIPTVLVNG 850

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI    +T +P +N  E+V+    +I                   P      G     
Sbjct: 851  AEGIGTAWSTKVPNYNPREIVENIRLMIRGEQ----------PRHMVPWFKNFRGTIEQM 900

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
            +           R V   E        I +TE+P +       E + E +    +K+   
Sbjct: 901  D---------ENRFVCSGEIAIIGEGTIEITELPIRTWTQTYKESVLEPMLDGSDKQPAM 951

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERF 352
            I D ++       + ++++         +  L++   LQ++ +   + L    G      
Sbjct: 952  ITDFKEYHTDTTVKFLVKMTPEKLRAAQMEGLHKVFKLQTVINTTSMVLFDAMGCLRRFN 1011

Query: 353  TLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----L 397
            T+  I   F   R++  + R  + +           N+AR     + G  +        +
Sbjct: 1012 TVEEICTDFFETRKKKYIERKAFQMGMLRAQSQRLSNQARFILAKIKGEILIENKRKLVI 1071

Query: 398  DEVVRIIRFSPNPETARRELMQR----------SWNASDIKDLIDLIDDSSYTIGSDGTM 447
             E +  + F P+P    +E  +R               + +   +  +++S   G D   
Sbjct: 1072 VEQLVKMGFDPDPVKKWKEAQKRKELEATGEVIPDEDEENESENEENEEASTPQGKDLER 1131

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             LS+     ++ + + +L+   +D +  E  +   E+K   ++
Sbjct: 1132 KLSDY--DYLVGMAIMKLSTEEKDKLLRESEAKMEELKALEEM 1172


>gi|311350453|gb|ADP92423.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|217069477|gb|ACJ83227.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 199

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/199 (55%), Positives = 146/199 (73%), Gaps = 1/199 (0%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E+ DG + +IDN +  L+ +M  I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 61  PPHSLNELTDGLLYLIDNKNASLEEIMHFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKV 120

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE    +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RV
Sbjct: 121 RAKTHIE-KRANKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRV 179

Query: 311 VIELKRGASADVILNQLYR 329
           VIELKR A ++++LN L++
Sbjct: 180 VIELKRDAMSEIVLNNLFK 198


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/543 (19%), Positives = 204/543 (37%), Gaps = 63/543 (11%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   +V+ +D +    + ++ N    R+IP + DGLKP  R+++F  ++     +K+ VK
Sbjct: 696  KETKTVTYSDFVNLELVLFS-NGDNVRSIPSMIDGLKPGQRKVIFTCIKRN---DKREVK 751

Query: 74   CARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
             A+++G V     + HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+ 
Sbjct: 752  VAQLAGSVAEHSAYHHGEQSLAMTIVNLAQNYVGSNNINLLEPRGQFGTRLSGGKDSASP 811

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    +      +        +      D    EPV      P VLVNG  GI  G +T
Sbjct: 812  RYIFTLMSPLTRLIFHPHDDPLL-VHEFEDNQKIEPVYYLPIIPMVLVNGVEGIGTGWST 870

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP +N  ++ +    ++D            +  P +      +   G K          
Sbjct: 871  KIPNYNPRDIAENLRRLLDGEKPK-------VMHPWYKNFKGNVEGFGDK---------Y 914

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
            VI G + I    GD+  I +TE+P         E + E +   +K    I++ R+ +   
Sbjct: 915  VISGEAAI--LPGDK--IEITELPVGTWTHNYKENVLEPMLGTDKVKPLISEYREYNTDT 970

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVA 363
              R V+ L  G  +++    +++   LQ+  S+  +    Y     +   +  IL+ F  
Sbjct: 971  TVRFVVSLLPGKLSEIEAEGIHKVFKLQTTISMTCMNAFDYNCCLEKYDKVEEILREFYD 1030

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R +  VRR  YL  + +  A  L   A  +    +   +I      +    EL++R + 
Sbjct: 1031 LRVKYYVRRKDYLEGQLQAEADKLSNQARFILKKCDKGLVIENKK-RKAMVEELIKRGYA 1089

Query: 424  ASDIKDLIDLIDD--------------------SSYTIGSDGTMYLSEVQTR------AI 457
               I D                                G       +  Q +       +
Sbjct: 1090 PDPIADWKKRASKIQGLTALEDDDAQESEEEEPEPDPKGKPVDPDKAFQQLKEVKKFNYL 1149

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            L + +  LT   +D++  + +    E+    +  ++       +   L+ + +  D  RR
Sbjct: 1150 LGMSMWMLTKEKKDELLKQRDQKLTELTTLKN-KTAPMLWREDLDAFLIKLDEVEDKERR 1208

Query: 518  TRI 520
              +
Sbjct: 1209 EEL 1211


>gi|311350421|gb|ADP92408.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350427|gb|ADP92411.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350433|gb|ADP92414.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350435|gb|ADP92415.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350437|gb|ADP92416.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350439|gb|ADP92417.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350442|gb|ADP92418.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350449|gb|ADP92421.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350451|gb|ADP92422.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350455|gb|ADP92424.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|294992601|gb|ADF57427.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/168 (52%), Positives = 119/168 (70%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +TV F  N+D + +EP VL A +PN+LVN   GI+ G AT+IP HNL 
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNESSGISAGYATDIPPHNLS 168


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
          Length = 1438

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/546 (20%), Positives = 197/546 (36%), Gaps = 60/546 (10%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 ++    V+ +D +    + +++   L R+IP + DGLKP  R+ILF   +     
Sbjct: 671  PGNHLDQRQPKVTYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFVAFKKIA-- 727

Query: 68   NKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDG 122
             +K +K A++ G V     + HG  ++  A+  MAQD+    ++ LLL  GQ    +  G
Sbjct: 728  -RKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGG 786

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   +L      L        +D   N DG   EP       P VLVNG  GI
Sbjct: 787  KDSASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGI 845

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  E+V     +++   +              P      G  G     A
Sbjct: 846  GTGWSTFIPNYNPREIVANVRRLLNGESM-------------VPMDPWYRGFKGTIEKTA 892

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +  G          E+   D   I +TE+P +         +  L  +       D++  
Sbjct: 893  SKEGGCTYTITGLYEEV--DETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAY 950

Query: 303  SDRQGYRV-VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILK 359
            +D +     +I  +    A      L ++    ++ + NM   +  G   +  T   IL+
Sbjct: 951  NDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILE 1010

Query: 360  AFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN----LDEVVRII 404
             F   R E   +R +            L NKAR    VL G  I        + E +R  
Sbjct: 1011 EFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQK 1070

Query: 405  RFSPNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
             F+P P  A      +  + +    ++  +++ D   +           +   AI  L +
Sbjct: 1071 GFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTI 1130

Query: 463  ARLTGL--GRDDIRNE-------------LNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             ++  L   RD +                L+ L    KE   +    +++   I+     
Sbjct: 1131 EKVEELLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELEKLDLKDAQVQQAIEAAQKK 1190

Query: 508  VKDELD 513
            ++ +  
Sbjct: 1191 IRAKSG 1196


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/434 (21%), Positives = 171/434 (39%), Gaps = 38/434 (8%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K    +S  D +    + ++ +  + R+IP + DGLKP  R++L+   +     +K+ VK
Sbjct: 667  KTTKEISYKDFVNLELVLFSNSDNV-RSIPCMLDGLKPGQRKVLYTCFKRD---DKREVK 722

Query: 74   CARISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
             A+++G V  K  + HG  ++   +  +AQ++  S  + L+   G FG+    G   A+ 
Sbjct: 723  VAQLAGSVAEKSAYHHGEMSLCSTIINLAQNYVGSNNINLLYPGGQFGTRLTGGKDSASP 782

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L      +   L    ++++   D    EPV      P +L+NG  GI  G AT
Sbjct: 783  RYIFTMLSALTRHIFHPLDDPLLEYQYE-DNQRIEPVWYLPIIPMLLINGADGIGTGWAT 841

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP HN  +V+     +++  +         +  P +     ++   G +     G   +
Sbjct: 842  KIPNHNPRDVIANIRRMLNGDEPK-------MLTPWYKNFRGVIESVGHQKYLTAGTVGL 894

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            +            D ++I ++E+P         E + E +    +K    IAD ++ +  
Sbjct: 895  L------------DGKKIEISELPIGTWTQTYKENVLEPLLHGSDKAKAVIADYKEYNTD 942

Query: 306  QGYRVVIELKRGAS-----ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
               R VI    G        +   ++L++ TS  S  S+N      Y         I   
Sbjct: 943  TTVRFVISFLPGEYEKLYAEEGGFHRLFKLTSSISTASMNAFDDKNYLKRYAHANEIFME 1002

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R +   +R  YLL   +  A  L   A  +        ++      +    EL++R
Sbjct: 1003 FYTVRLDFYGKRRAYLLGMLQAEADSLSDKARFIMEKCNGTLVVENKK-RKALIDELIKR 1061

Query: 421  SWNASDIKDLIDLI 434
             + A  I++    +
Sbjct: 1062 GYRADPIQEWKRRV 1075


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
          Length = 1074

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 167/453 (36%), Gaps = 35/453 (7%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             + ++SI++ +    + +++   L R+I  + DGLKP  R++++      ++   K  + 
Sbjct: 639  NVRNLSISNFVHKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 75   ARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
            A    E    +H  G  ++ D + ++A D+  S  + L+E  G FG+  + G   +  RY
Sbjct: 698  AAFVAEKSAYHH--GEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  +
Sbjct: 756  IFTKLTKDARKIFDPRDDPILNYLDD-DGRPIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P  N  ++ D     ++                         G  G K       GS + 
Sbjct: 815  PPFNPKDIKDNIQKALEGHGFTQ-------------MRPWFKGFKG-KIFKEDESGSWIA 860

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             G+ H    +G R  + +TE+P         E +  LV +K    I +  + S       
Sbjct: 861  EGIWH---DTGSR--LKITELPPGRWTQDYKEYLDTLVEKKV---ITNFTNNSTTDDVDF 912

Query: 311  VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
             I    G      L +  +        ++++        +  +   ILK FV  R +   
Sbjct: 913  EIVGYSGKD----LVKDLKLRKSFHTSNMHLFHPTKGIYKYNSPEEILKDFVDLRLDHYK 968

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            +R ++L+ K       + G       +     I+ F    +   R+L Q         D 
Sbjct: 969  KRREHLI-KVLQTKATMCGYKSKFVTMVIEGDIVVFKRKRDDLERQLSQLFPKIGGTYDY 1027

Query: 431  IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
            +  I    YT  S   +     Q R  LE+   
Sbjct: 1028 LLNIKTVQYTEESVRELLKEAKQARDELEIMKK 1060


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
          Length = 1473

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/546 (20%), Positives = 197/546 (36%), Gaps = 60/546 (10%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 ++    V+ +D +    + +++   L R+IP + DGLKP  R+ILF   +     
Sbjct: 671  PGNHLDQRQPKVTYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFVAFKKIA-- 727

Query: 68   NKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDG 122
             +K +K A++ G V     + HG  ++  A+  MAQD+    ++ LLL  GQ    +  G
Sbjct: 728  -RKEMKVAQLVGYVSLLSAYHHGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGG 786

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   +L      L        +D   N DG   EP       P VLVNG  GI
Sbjct: 787  KDSASARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGI 845

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  E+V     +++   +              P      G  G     A
Sbjct: 846  GTGWSTFIPNYNPREIVANVRRLLNGESM-------------VPMDPWYRGFKGTIEKTA 892

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +  G          E+   D   I +TE+P +         +  L  +       D++  
Sbjct: 893  SKEGGCTYTITGLYEEV--DETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAY 950

Query: 303  SDRQGYRV-VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILK 359
            +D +     +I  +    A      L ++    ++ + NM   +  G   +  T   IL+
Sbjct: 951  NDEKSVDFDLILSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILE 1010

Query: 360  AFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN----LDEVVRII 404
             F   R E   +R +            L NKAR    VL G  I        + E +R  
Sbjct: 1011 EFFDLRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQK 1070

Query: 405  RFSPNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
             F+P P  A      +  + +    ++  +++ D   +           +   AI  L +
Sbjct: 1071 GFTPFPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTI 1130

Query: 463  ARLTGL--GRDDIRNE-------------LNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             ++  L   RD +                L+ L    KE   +    +++   I+     
Sbjct: 1131 EKVEELLADRDKMIIAVADMKKTTPKSLWLSDLESLDKELEKLDLKDAQVQQAIEAAQKK 1190

Query: 508  VKDELD 513
            ++ +  
Sbjct: 1191 IRAKSG 1196


>gi|217069463|gb|ACJ83220.1| DNA gyrase subunit A [Campylobacter lari subsp. lari]
          Length = 194

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 1   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 60

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 61  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 120

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 121 -KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 179

Query: 318 ASADVILNQLYR 329
           A ++++LN L++
Sbjct: 180 AMSEIVLNNLFK 191


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 246 DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 304

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
           + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 305 QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 362

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 363 RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 421

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 422 YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 468

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 469 YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 522

Query: 307 GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
             + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 523 -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 581

Query: 364 FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
            R E   +R  ++  + +                             A +     +    
Sbjct: 582 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 641

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 642 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 697

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +L +R+  LT      +  +      E++  L +
Sbjct: 698 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 731


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 256 DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 314

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
           + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 315 QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 372

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 373 RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 431

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 432 YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 478

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 479 YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 532

Query: 307 GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
             + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 533 -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 591

Query: 364 FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
            R E   +R  ++  + +                             A +     +    
Sbjct: 592 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 651

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 652 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 707

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +L +R+  LT      +  +      E++  L +
Sbjct: 708 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 741


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 209/546 (38%), Gaps = 73/546 (13%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            + +      +       ++S +D +    + ++    L R++P L DGLKP  R++L+  
Sbjct: 667  LDDRPEPGTDLYSADTRTLSYSDFINKELVMFSC-ADLERSVPSLCDGLKPGQRKVLYTC 725

Query: 61   MQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
            ++     +K+ VK A+++G V     + HG  ++   +  MAQ++  S  L L++  G F
Sbjct: 726  LRRN---DKREVKVAQLAGSVAELSAYHHGEQSLLGTIINMAQNYVGSNNLNLLQPIGQF 782

Query: 118  GS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            G+    G   A+ RY    L      L   + ++ + ++ + D    EP   C   P VL
Sbjct: 783  GTRLHGGKDAASPRYIFTMLSPLTRLLFPQVDENLLTWQYD-DNQKVEPSWYCPIIPTVL 841

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI  G +T +P H++ EVV     +I+  +            P  P+     G  
Sbjct: 842  VNGTEGIGTGWSTRVPNHDIREVVKNIKRLINGEE----------PVPMLPSYKNFRGTI 891

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKR 292
                A          R V   E    D + + +TE+P +    A  E + E +    +K 
Sbjct: 892  EEVEA---------NRYVVSGEAALIDDQTVEITELPIKSWTQAYKESVLEPLVAGTDKA 942

Query: 293  IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL----NGYK 348
               I + ++ +     R ++++       +  + L+++ SLQ+  S N   +     G  
Sbjct: 943  PQQILEYKEYNTDITVRFLVKMGADKLKTMERSGLHKFLSLQNSLSCNNTLVLFDEFGRL 1002

Query: 349  PERFTLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVANL 397
             +  T + IL  F   R ++  +R  +           L N+AR     + G        
Sbjct: 1003 RKFNTTVEILLEFYKIRSKLYEKRKDFLTGLLTAEAAKLTNQARFIVEKIEGKISIFNKP 1062

Query: 398  DEVVRIIR-----FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
             +V+  +       S   +  +  + ++    +  ++  ++ D+                
Sbjct: 1063 KKVLIKMLVDNNYDSDPVKAWKNSIAKKVEERASDEEEEEVEDNKGPDFN---------- 1112

Query: 453  QTRAILELRLARLTGLGRDDIRN-------ELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
                IL + L  L+   +D++         EL  L  +    L  L    + +  + +  
Sbjct: 1113 ---YILSMPLWSLSKERKDELLKQRDAKCGELEELKKKTPTRLW-LDDLDKFMEELDKVE 1168

Query: 506  LSVKDE 511
               +++
Sbjct: 1169 QKERED 1174


>gi|311350423|gb|ADP92409.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350425|gb|ADP92410.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350431|gb|ADP92413.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350447|gb|ADP92420.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|36988462|gb|AAQ87912.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 144

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/144 (58%), Positives = 113/144 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNY
Sbjct: 61  VRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGG 181
           DG+   P V+  + P +LVNG  G
Sbjct: 121 DGTEMIPAVMPTKVPTLLVNGSSG 144


>gi|311350429|gb|ADP92412.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350445|gb|ADP92419.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|217069483|gb|ACJ83230.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 196

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 122

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 123 -KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 181

Query: 318 ASADVILNQLYR 329
           A ++++LN L++
Sbjct: 182 AMSEIVLNNLFK 193


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1520

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/524 (19%), Positives = 194/524 (37%), Gaps = 49/524 (9%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++ +    K    V+  D +    + ++ N+   R+IP L DG KP  R++LF   +
Sbjct: 712  QQGLAEEYLYNKDTRFVTFKDFVNRELVLFS-NLDNERSIPCLVDGFKPGQRKVLFACFK 770

Query: 63   MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                 +K+ VK A+++G V     + HG  ++   +  +AQD+  S  + L+   G FG+
Sbjct: 771  R---ADKREVKVAQLAGAVAEISAYHHGEQSLMGTIVNLAQDYVGSNNINLLLPIGQFGT 827

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ RY   +L      L      + + F    +   +         P VLVN
Sbjct: 828  RLQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLRFLYEENQRIEPEWYCP-IIPMVLVN 886

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +TNIP +N  E+V     +I                              +
Sbjct: 887  GAQGIGTGWSTNIPNYNPRELVKNIKRLIAGEPQ-----------------------KAL 923

Query: 238  KNAYATGRGSIVI----RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---RE 290
               Y   RG I+     R   + E    D   I +TE+P +       EK+ E +    +
Sbjct: 924  APWYKNFRGKIIQIDPSRFACYGEVAVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSD 983

Query: 291  KRIVDIADLRDESDRQGYRVVIELKRGASADVI----LNQLYRYTSLQSLFSVNMVALNG 346
            K+   I D ++       + V++L  G   ++     L+Q+++  ++ +   + +    G
Sbjct: 984  KKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDLHQVFKLQAVINTTCMVLFDAAG 1043

Query: 347  YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
                  +   I + F   R+E  V+R +YLL   + ++  L   A  +        I+  
Sbjct: 1044 CLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQSKRLTNQARFILAKINN-EIVLE 1102

Query: 407  SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
            +         L++  ++A  +K   +           +  +   ++   A+ E       
Sbjct: 1103 NKKKAAIVDVLIKMKFDADPVKKWKEEQKLKELRESGEIELDEDDLAAVAVEEDEAISSA 1162

Query: 467  GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
                +   ++ + L         I  S      +IK+    + +
Sbjct: 1163 AKAVETKLSDYDYLVGMAL----IKLSEEEKNKLIKESEEKMAE 1202


>gi|217069465|gb|ACJ83221.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 194

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 144/192 (75%), Gaps = 1/192 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 122

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 123 -KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 181

Query: 318 ASADVILNQLYR 329
           A ++++LN L++
Sbjct: 182 AMSEIVLNNLFK 193


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 98/501 (19%), Positives = 168/501 (33%), Gaps = 38/501 (7%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  ++    +  +D +    + +++   L R+IP + DGLKP  R+ILF   +    
Sbjct: 661  EPGTHLDQNQKLIKYSDFINKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFV 719

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDG 122
               K  + +    E    +H  G  ++   +  MAQD+    ++ LLL  GQ    SV G
Sbjct: 720  KEAKISQFSGYVSEHSAYHH--GEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRSVGG 777

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   +L     FL        +D+     G   EP       P VLVNG  GI
Sbjct: 778  KDHASARYIYTQLSPITRFLFPKDDDGLLDYLDED-GQTIEPNWYMPIIPMVLVNGCEGI 836

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  ++V     +++        +ME       P      G  G     A
Sbjct: 837  GTGWSTFIPNYNPRDIVANIRRLLNG------EMME-------PMNPWYRGFKGTIEKGA 883

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI--------AELVREKRIV 294
            +            I +   +   + +TE+P +         +         E     +  
Sbjct: 884  SKEAGCSYTVNGVINEV--NETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKDP 941

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPER 351
             I D R   D       + L            L +   L +  S + + L        + 
Sbjct: 942  FIKDFRKYGDDATVVFEVLLSEENMMIAKQEGLLKKFKLTTTISTSNMHLFDSAGVIKKY 1001

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
                 IL+ F   R E   RR K LL         L      +  +     II  +    
Sbjct: 1002 DNPEQILEEFFHLRLEYYERRKKVLLENLEFELLKLENKVRFILGVVRG-EIIVNNRKRA 1060

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGL 468
                EL Q+ +     K    +   +     ++ ++ +S V+      +L + +  LT  
Sbjct: 1061 DLFLELHQKGFTPIPKKSKAVVAGATDDKDEAEDSLEVSGVRASDYDYLLSMAIGTLTLE 1120

Query: 469  GRDDIRNELNSLGIEIKECLD 489
                +  + + L  E+     
Sbjct: 1121 KVQQLCADHDKLNGEVDNLRK 1141


>gi|217069487|gb|ACJ83232.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 190

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 108/191 (56%), Positives = 143/191 (74%), Gaps = 1/191 (0%)

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+VDG + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +
Sbjct: 61  LNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKT 120

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE    +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIEL
Sbjct: 121 HIE-KKSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIEL 179

Query: 315 KRGASADVILN 325
           KR A ++++LN
Sbjct: 180 KREAMSEIVLN 190


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 153/399 (38%), Gaps = 37/399 (9%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             ++   + +    + ++    L R+IP + DG KP  R++LF   +  ++ + K  + + 
Sbjct: 698  EAIRYDEFINKELILFSR-ADLLRSIPSMVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSG 756

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G A++   +  +AQD+  S  + L+   G FG+    G   A+ RY  
Sbjct: 757  YVSEHSAYHH--GEASLAMTIVNLAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIF 814

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL +    +  +     +++    DG   EP       P VLVNG  GI  G +T+IP 
Sbjct: 815  TRLHEICRAIFPECDDALLNYLDE-DGQRIEPDFYYPVLPLVLVNGAEGIGTGWSTSIPN 873

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
             N  +++     V++  +                         G I      G     + 
Sbjct: 874  FNPRDIISNIKLVLEGEEARQ-------------MHPWYRNFNGSIVEEIVKGDSRYTVT 920

Query: 252  GVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            G   I     D   + +TE+P   +  +    LE +     +     I D ++       
Sbjct: 921  GSYII----RDECTLEITELPLRSWTTDYKDFLEDMLAPKTKNEKPFITDYKEYHTDTTV 976

Query: 309  RVVIELKRGASADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              VI +     A        + + ++ ++  S+ ++++   +G   +  + I +L+AF+ 
Sbjct: 977  HFVITMPPENLAAAQSAPGGIEKKFKLSTKVSISNMHLFNEHGAITKYASPIDVLQAFIP 1036

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
             R +   +R   L+  A  +      L+  +  +  VV 
Sbjct: 1037 LRLKAYAQRRDMLIRLAESQL---KRLSNKMRFILAVVD 1072


>gi|29691138|gb|AAO91621.1| DNA gyrase A subunit [Pectobacterium wasabiae]
          Length = 183

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILT 802
           A+  E +  +        +I  + E I +  +D     +  N ++   ++L  +E  ++T
Sbjct: 53  AEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVT 112

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 113 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 169

Query: 863 IRVPVNEIRIASR 875
             + V ++  ASR
Sbjct: 170 YWMKVYQLPEASR 182


>gi|217069467|gb|ACJ83222.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 186

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 102/184 (55%), Positives = 140/184 (76%), Gaps = 1/184 (0%)

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG + +
Sbjct: 1   IDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYL 60

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE    +++ 
Sbjct: 61  IDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE-KRANKDI 119

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++++LN
Sbjct: 120 IVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSEIVLN 179

Query: 326 QLYR 329
            L++
Sbjct: 180 NLFK 183


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 106/540 (19%), Positives = 195/540 (36%), Gaps = 60/540 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +   +K    VS  D +    + + +N    R+IP L DGLKP  R++LF   +
Sbjct: 702  EDGLTEEYLYDKNTYVVSFKDFVNKELVLF-LNCDNERSIPSLVDGLKPGQRKVLFTCFK 760

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G A++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 761  RADKKEVKVAQLAGAVGEMSAYHH--GEASLMSTIVNLAQDFVGSNNINLLLPIGQFGTR 818

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   + ++ + F    +    EP   C   P VLVNG
Sbjct: 819  LQGGKDSASPRYIFTQLNPVTKALFPSIDENVLRFLFE-ENQKIEPEWYCPVIPTVLVNG 877

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI    +T +P +N  E+VD   A+ID  +            P  P      G     
Sbjct: 878  AEGIGTAWSTKVPCYNPREIVDNMRALIDGKE----------PKPLIPWYKHFRGTIEQL 927

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVD 295
            +           R V + E    + E I +TE+P +       E +   +    +K+   
Sbjct: 928  DD---------QRFVCNGEVAVINNETIEITELPIRTWTQTYKETVLVPMMDGNDKQPAF 978

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV------------- 342
            I D ++       + VI++            L++   LQ++ +   +             
Sbjct: 979  ITDFKEYHTDTTVKFVIKMNGDKLRASKEEGLHKVFKLQTVINTTSMVYEHYSRVCQVLF 1038

Query: 343  ALNGYKPERFTLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLA 391
               GY      +  I K F   R++  + R  +           L N+AR     + G  
Sbjct: 1039 DPFGYLRRFENVTDICKEFFEIRKKKYIERKSFQEGLLRAQSERLSNQARFILAKIKGEI 1098

Query: 392  IAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
            +        +  ++I+ S  P+  ++   +R      +   I   +D      ++   Y 
Sbjct: 1099 LIENKRKAAIVEQLIKMSFKPDPVKKWKEERKKQELIMSGEITQDEDEEEQEENEEDAYQ 1158

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNS--LGIEIKECLDILSSRSRLLGIIKQELLS 507
            S+     + +     L G+    +  E     L     + +++ S        +    L+
Sbjct: 1159 SKELANKLSDYD--YLVGMAILKLSEEEKDKLLRESEAKLIELKSLEEMTWADLWNNDLN 1216


>gi|161511951|emb|CAP45395.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/152 (59%), Positives = 114/152 (75%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 67

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            V+  + PN+LVNG  GIAVGMATN      G
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATNFLRRTTG 159


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 106/555 (19%), Positives = 207/555 (37%), Gaps = 73/555 (13%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            E  ++ +    K   +VS  D +    + ++ N    R+IP L DGLKP  R++LF   +
Sbjct: 726  EQGLTEEYLYNKDTRAVSFKDFVNKELVLFS-NADNERSIPSLVDGLKPGQRKVLFTCFK 784

Query: 63   MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS- 119
               +   K  + A   GE+   +H  G A++   +  +AQD+  S  + L+   G FG+ 
Sbjct: 785  RADKKEVKVAQLAGAVGEMSAYHH--GEASLMSTIVNLAQDYVGSNNINLLLPIGQFGTR 842

Query: 120  -VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      L   + ++ + F    +   +         P VLVNG
Sbjct: 843  LQGGKDSASPRYIFTQLNPVTRALFPIVDENVLRFLFEENQRIEPEWYCP-IIPTVLVNG 901

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-I 237
              GI    +T IP +N  E+VD    +I   +               P      G    +
Sbjct: 902  AEGIGTAWSTKIPNYNPREIVDNMRRLIRGEE----------PKSLTPWFKNFRGTIEKL 951

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIV 294
             ++     G I +     IE          +TE+P +       E + E +    +K+  
Sbjct: 952  DDSRYICSGEIALLSDDTIE----------ITELPIRTWTQNYKETVLEPMLEGSDKQPP 1001

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPER 351
             I D ++       + V+++      +  +  L++   LQS  +++ + L    G     
Sbjct: 1002 LIQDFKEYHTDTTVKFVVKMNAAKLREAEMEGLHKIFKLQSAINISSMVLFDPLGCLRRF 1061

Query: 352  FTLIGILKAFVAFREEVVVRRTKY-----------LLNKARDRAHVLVGLAIAVAN---- 396
              +  I K F   R++  + R  +           L N+AR     + G  +        
Sbjct: 1062 PNVEEICKEFFEIRKKKYIERKAFQEGMLRAQSERLSNQARFILEKIKGEILIENKRKVA 1121

Query: 397  LDEVVRIIRFSPNPETARRELMQRSW----------NASDIKDLIDLIDDSSYTIGSDGT 446
            + E +    F P+P    +EL ++            +     ++ +  + S   +  D T
Sbjct: 1122 IVEQLVKKGFDPDPVKRWKELQRKRELEMTGEIQVDDEEMEGEIEEESESSVSPVMKDLT 1181

Query: 447  MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE-- 504
              LS+     ++ + + +L+   +D +      L     +  ++ S  S+    + +E  
Sbjct: 1182 KKLSDY--DYLVGMAILKLSEEEKDKL------LRDSELKLEELKSLESKTWSDLWKEDL 1233

Query: 505  ---LLSVKDELDTPR 516
               L+ ++ +    R
Sbjct: 1234 DNFLVELEKQEAKER 1248


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 111/554 (20%), Positives = 205/554 (37%), Gaps = 72/554 (12%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   SVS TD +    + ++ N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 692  KDTKSVSYTDFVNLELVLFS-NADNIRSIPCLVDGLKPGQRKVMFTCFKRN---DKREVK 747

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
             A+++G V     + HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+ 
Sbjct: 748  VAQLAGSVAEMSAYHHGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSASP 807

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   ++      + +      +      D    EPV      P VLVNG  GI  G  T
Sbjct: 808  RYIFTKMSPLTRMIFNPSDDYLLK-HEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWMT 866

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP +N  E+V    A++D  +               PT  V   +  I +    G    
Sbjct: 867  KIPNYNPRELVKNIRAMLDQEE---------------PTNMVPWYKNFIGSIVDCGDNRY 911

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            V  G    E       ++ +TE+P         E + E +    EK    I D ++ +  
Sbjct: 912  VASG----EIAIIGDNRVEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNTD 967

Query: 306  QGYRVVIELKRGASA----DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
               + +I    G       +  L++ ++  SL S  S+ +    G      ++  ILK +
Sbjct: 968  TTVKFIITFLPGQLETLENEAGLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDILKDY 1027

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R  +  +R  YL    +  A  L   A  +    +   ++      +    EL++R 
Sbjct: 1028 YKLRLTMYQKRKDYLEGMLKAEASKLSNQARFIMEKCDRTLVVENKK-RKVIIDELIKRG 1086

Query: 422  WNASDIKDLIDLI--DDSSYTIGSDGTMYLSEVQT--------------------RAILE 459
            +    +KD    +  +D      ++     +  QT                      +L 
Sbjct: 1087 YEPDPVKDWKQRVATEDGDEEAPAEEEEAPATEQTTKKPVDPEKAFQNSTDVQKFDYLLG 1146

Query: 460  LRLARLTGLGRDDI-------RNELNSLGIE------IKECLDILSSRSRLLGIIKQELL 506
            + +  LT   ++++         EL +L  +       ++    +     +    + +  
Sbjct: 1147 MSMWMLTEEKKNELLRQRDIKLQELETLKKKTHCDLWREDLDAFMEKLDEVEEKERNDEA 1206

Query: 507  SVKDELDTPRRTRI 520
             +K +     R +I
Sbjct: 1207 GIKPKKAQAGRKKI 1220


>gi|29691140|gb|AAO91622.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp. odoriferum]
          Length = 183

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 112/169 (66%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEPQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILT 802
           A+  E +  +        +I  + E I +  +D     +  N ++   ++L  +E  ++T
Sbjct: 53  AEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVT 112

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 113 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 169

Query: 863 IRVPVNEIRIASR 875
             + V ++  ASR
Sbjct: 170 YWMKVYQLPEASR 182


>gi|282889677|ref|ZP_06298216.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500251|gb|EFB42531.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 118/484 (24%), Positives = 210/484 (43%), Gaps = 52/484 (10%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + K  K A ++G+ M  YHPHG+A I +AL  M    + R  L++ QGNFG++  GDP A
Sbjct: 3   DGKLHKVANVAGQTMA-YHPHGDAPITEALVNM----ANRGYLLDQQGNFGNIFTGDPAA 57

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL   A         D   + P+YDG  QEP+VL A+ P +L+ G  GIAVGM
Sbjct: 58  AARYIETRLAALAK--ETLFNPDLTAYAPSYDGRHQEPIVLPAKIPLLLMQGATGIAVGM 115

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           +T+I  HN  E+++  +A++++ +  +         PDFPTG ++       + Y  GRG
Sbjct: 116 STSILPHNFEELLEAEIAILEDREFSV--------FPDFPTGGIM-----DASDYNQGRG 162

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            + +R    +     D + +V+TEI Y     +++  I E  +  +I    D  ++   +
Sbjct: 163 KVKLRAKIEV----RDPKTLVITEICYGTTTESLIRSIDEAAKRGKIKI--DAINDYTAE 216

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + I+L RG  A+ ++  LY YT  +      +V +    P    +  ILK      +
Sbjct: 217 KVEIEIKLPRGQYAEELIQALYAYTECEVAIHSQIVVIKDDLPWETDVDSILKLHAEKLQ 276

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E +  R +  L + R +  +       +   + + + I  + + E     + +      D
Sbjct: 277 EYL--RIELELERDRFKEKIFAKTLEQIFIENRLYKNIENATSYEKVHEIIEKGLMPFHD 334

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
               I   DD                    +L + + R++    +   +E++++  ++ E
Sbjct: 335 QLTRIPHYDDR-----------------EGLLSIPIRRISKFDLEKNLSEIHAIDKQLIE 377

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               L +   +       L  +  +     PRRT I   + ++       R+  V     
Sbjct: 378 VEKHLKN---VKKFTIHYLRGLLTKYAKDYPRRTEIT-SIEEINMRAIATRKMTVGFDPS 433

Query: 545 LGYV 548
            G++
Sbjct: 434 TGFL 437


>gi|217069471|gb|ACJ83224.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 190

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 105/190 (55%), Positives = 143/190 (75%), Gaps = 1/190 (0%)

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++
Sbjct: 1   EELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELI 60

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE  
Sbjct: 61  DGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE-K 119

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A 
Sbjct: 120 RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAM 179

Query: 320 ADVILNQLYR 329
           ++++LN L++
Sbjct: 180 SEIVLNNLFK 189


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 180/481 (37%), Gaps = 46/481 (9%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            TE   S  E     +  + I+D +    + +++   L R+I  + DGLKP  R++L+   
Sbjct: 624  TEKKASELEVPYGNVERLGISDFIHKDLVNFSL-ADLKRSIAHVSDGLKPSQRKVLYACF 682

Query: 62   QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
               +    K  + A    E    +H  G  ++ D + ++A ++  S  + L+E  G FG+
Sbjct: 683  TKNLTSEMKVAQLAAYVSEKTSYHH--GEVSLADTIVKLAHNFTGSNNINLLEPCGQFGT 740

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
              + G   +  RY   +L K A  L D      +++  + DG   EP       P VLVN
Sbjct: 741  RLMGGKDASQTRYIFTKLTKNARILFDPKDDPVLNYLDD-DGKQIEPDYYVPILPTVLVN 799

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G ++ IP  N  ++      +I    +           P  P      GR   
Sbjct: 800  GTEGIGTGFSSYIPPFNPLDIKHNIERIIRGETV----------VPMKPWFDKFTGRV-- 847

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
               ++   G  +  GV          + ++VTE+P         E +  L+ +K+   I 
Sbjct: 848  ---FSNEDGLWITEGVWKY-----SGKNVLVTELPPGRWTQDYKEYLDTLIEKKK---IT 896

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            +  + S       +IE   G      + + ++      + ++++        +  +   I
Sbjct: 897  NYVNNSTTDDVNFIIEGYTGND----IIKDFKLQKTFHVSNMHLFHPTRGIHKYESPEEI 952

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            L  FV  R E   +R  +L+   +++   L  ++  +  +     I+      E  R+  
Sbjct: 953  LTDFVKIRSETYKKRKAHLIRVLKEKTKKLENMSKFIDMVIHEKLIVFRRKRVELERQ-- 1010

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     ++++ D ID S   + +  T   +    ++I E               + +
Sbjct: 1011 ---------MENIFDKIDGSYEYLLNIKTYQYTLEAIQSIREETSKSRIEFDTLQQMSHI 1061

Query: 478  N 478
            +
Sbjct: 1062 D 1062


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1416

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 186/540 (34%), Gaps = 68/540 (12%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +   +  I  +   D +    + ++ N    R+IP L DGLKP  R+ILF   +  + 
Sbjct: 649  DPNSFVDYNIKQLRYKDFIDRELIHFS-NADNLRSIPSLCDGLKPGQRKILFSCFKRNL- 706

Query: 67   WNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF--GSVD 121
              K  +K A++ G V     + HG  ++   +  MAQ++  S  + L+   G F   +  
Sbjct: 707  --KSEIKVAQLIGYVAEHSAYHHGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGTRNQG 764

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L K    L  +     + +  + D    EP       P  LVNG  G
Sbjct: 765  GKEHASARYIFTSLSKITRILFPEHDDHVLKYLED-DNQVVEPEWYMPIIPMCLVNGSSG 823

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP +N  E+V+     ++                         G  G     
Sbjct: 824  IGTGWSTDIPNYNHKEIVEQIRGKLEGKPFTE-------------LHPWYKGFQGQIEI- 869

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLR 300
               +G  +++G   I++     E I +TE+P           + EL+   +   +I D+R
Sbjct: 870  -NPKGGYIVKGQYEIDEVE---ETIKITELPVGKWTRDYKNYLEELLSPPKGEPEIEDIR 925

Query: 301  DESDRQGYRVVIELKRGASADV-ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +          ++   G       + +  + ++     ++ M           + + I++
Sbjct: 926  EYHTNNRVHFEVQAIPGRIQQWGDIEKKLKLSTTMQTTNIVMFNDKYKLKRYQSTVEIME 985

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN----------------------- 396
             F A R +   +R  YL++K +    +L      +                         
Sbjct: 986  EFYALRLKCYQKRKDYLVSKIQRDVDILQNKMKFITLVVNGTLEIRNARKKGVLNKLKEL 1045

Query: 397  ----LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
                + ++ RI          +++  Q   N  +  + +   ++       +G + LSE 
Sbjct: 1046 GLTPMSKITRINSTKIQAFEEKKKESQAEKNEDNEDEEVQQDEEEEEEQVQEGEIPLSEY 1105

Query: 453  QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
                +L + +  LT      ++ ++     E+                IK       D+ 
Sbjct: 1106 --NYLLSMPIFSLTEEKVLQLKKQVEEKESELLIL---------QKKEIKDMWTEDLDKF 1154


>gi|28916614|gb|AAO59540.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 197

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 118/196 (60%), Positives = 156/196 (79%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIA GMATNIP H LGEV++G +AV +N
Sbjct: 2   DTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEVIEGVLAVSEN 61

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P+I    LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 62  PEITNQELMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIV 121

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY
Sbjct: 122 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLY 181

Query: 329 RYTSLQSLFSVNMVAL 344
           + T+LQ+ F +N++AL
Sbjct: 182 KQTALQTSFGINLLAL 197


>gi|29691134|gb|AAO91619.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 183

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILT 802
           A+  E +  +        +I  + E I +  +D     +  N ++   ++L  +E  ++T
Sbjct: 53  AEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVT 112

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 113 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 169

Query: 863 IRVPVNEIRIASR 875
             + V ++  ASR
Sbjct: 170 YWMKVYQLPEASR 182


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 111/536 (20%), Positives = 185/536 (34%), Gaps = 46/536 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +     +  +D +    + +++   L R+IP + DGLKP  R+ILF   +    
Sbjct: 664  EPGTHLDHNQKIIKYSDFINKELILFSM-ADLQRSIPSMVDGLKPGQRKILFCSFKRNFV 722

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDG 122
               K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG  SV G
Sbjct: 723  KEAKVSQFSGYVSEHSAYHH--GEQSLAGTIIGMAQDFVGSNNINLLQPNGQFGTRSVGG 780

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               A+ RY   +L     FL        +D+     G   EP       P VLVNG  GI
Sbjct: 781  KDHASARYIYTQLSPITRFLFPKDDDGLLDYLDED-GQTIEPTWYMPIIPTVLVNGCEGI 839

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T IP +N  +VV     +++        +ME       P      G  G     A
Sbjct: 840  GTGWSTFIPNYNPRDVVANIRRLLNG------EMME-------PMNPWYRGFKGTIEKGA 886

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI--------AELVREKRIV 294
            +  G      V+ +     +   + +TE+P +         +         E     +  
Sbjct: 887  SKEGGCSSYTVNGVINEVNE-TTLRITELPIRRWTDDYKAFLNSVTEGTRDENGNLPKDP 945

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPER 351
             + D R   D       ++L            L +   L +  S + + L        + 
Sbjct: 946  FVKDFRKYGDDAAVHFEVQLSEENMLVAKQEGLLKKFKLTTTISTSNMHLFDSAGVIKKY 1005

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
                 IL+ F   R E    R K LL         L      +  +     II  +    
Sbjct: 1006 DNPEQILENFFHLRLEYYETRKKVLLENLEFELLKLENKVRFILGVVRG-EIIVNNRKRA 1064

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELRLA 463
                EL Q+ +N    K    +   +  T  ++ +  +S V+          AI  L L 
Sbjct: 1065 DLLLELHQKGFNPIPKKSKAVVAGATDDTEEAEDSPDVSGVRASDYDYLLSMAIGTLTLE 1124

Query: 464  RLTGL--GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            R+  L   RD +  E++SL     + L +    +  + +    L     E +  RR
Sbjct: 1125 RVQQLCADRDKLNGEVDSLRKTTPKVLWVKDLEALEMQL--DMLDEYDAEAEEARR 1178


>gi|297464681|ref|XP_002703368.1| PREDICTED: DNA topoisomerase II, beta isozyme, partial [Bos taurus]
          Length = 873

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 100/486 (20%), Positives = 188/486 (38%), Gaps = 50/486 (10%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--S 105
            KP  R++LF   +     +K+ VK A+++G V     + HG  A+   +  +AQ++  S
Sbjct: 1   FKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGS 57

Query: 106 LRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
             + L++  G FG+    G   A+ RY    L   A  L   +  + + F  + D    E
Sbjct: 58  NNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFLYD-DNQRVE 116

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P       P VL+NG  GI  G A  +P ++  E+V+    ++D  D            P
Sbjct: 117 PEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHP 166

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
             P      G          G+    + G    E    DR  + +TE+P +       E+
Sbjct: 167 MLPNYKNFKGT-----IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYKEQ 217

Query: 284 IAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           + E +    +K    I+D ++       + V+++     A      L++   LQ+  + N
Sbjct: 218 VLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCN 277

Query: 341 MVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVAN 396
            + L  +     +  T+  ILK F   R      R ++L+     +   +       +  
Sbjct: 278 SMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEK 337

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-- 454
           +   + I   S   +   + L+QR + +  +K   +  + ++    S      S   +  
Sbjct: 338 IQGKITIENRSK--KDLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSDSGT 395

Query: 455 ------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
                   IL + L  LT    +++  + ++ G E+ +      S S L    K++L + 
Sbjct: 396 PSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKR--KSPSDLW---KEDLAAF 450

Query: 509 KDELDT 514
            +ELD 
Sbjct: 451 VEELDK 456


>gi|109290217|ref|YP_656466.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
 gi|104345890|gb|ABF72790.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
          Length = 544

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/469 (21%), Positives = 187/469 (39%), Gaps = 37/469 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L +A+  +  RAIP + DG KPV R  ++  ++   +   K+ K 
Sbjct: 99  NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 158

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A ++G V    + HG  +   A   +A  W+  + ++EG GNFGS      AA RY  CR
Sbjct: 159 AALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCR 218

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +  D+    V      D     P       P VL NG  GIA G AT I  H+
Sbjct: 219 VHQNFWDIYKDISLSPVHP----DPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPHS 274

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              +V   +A +   +I    +        FP    I+ R   K+    G   +V     
Sbjct: 275 YESLVKCTLAAVKGEEIPEPEVQ-------FPCFKGIVRRINSKSIEIEGLYELV----- 322

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                   + ++++TE+P + ++   +  + +L  + +IV   +   +  R    +  + 
Sbjct: 323 -------GQTKLIITEVPVRYDRLEYVSILDKLEEQGKIVGYKEQTSDGFRFEVTLKRQD 375

Query: 315 KRG----ASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEV 368
           K G     + +V   ++ +  +L+   S N+  L  NG   E      +++ FV  R++ 
Sbjct: 376 KFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVEHRKKY 435

Query: 369 VVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             +R  +   KA     +     A     ++E + +   S      + +L+    +  ++
Sbjct: 436 TNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEEKIVLRGKS------KAQLIAEVKSKPNM 489

Query: 428 KDLI-DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                +L+  S Y +  D T  L E   +   E      T    + +++
Sbjct: 490 AGFENELVGMSIYRLTEDETHKLQEEALKQTKEYDYWSNTTPENEYVKD 538


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 199/531 (37%), Gaps = 53/531 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  +T + I++ +    + +++     R+IP + DG KP  R++L+G+ +  +
Sbjct: 705  FQPGTFLDPNLTEIPISEFINKELILFSM-ADNIRSIPSVMDGFKPTQRKVLYGVYKRNL 763

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
                K  +     GE  G +H  G A++   +  +AQD+  S  L +++  G FGS    
Sbjct: 764  TSEIKVAQLVGYIGEHSGYHH--GEASLTQTIISLAQDFVGSNNLNILKPNGGFGSRASG 821

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   +A RY    +      + + L    +++  + D    EP       P +LVNG  G
Sbjct: 822  GKDASAARYIFTEVTPITRKVYNTLDNPLLNYLQD-DEQTVEPQWYVPVLPMILVNGSEG 880

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T IP  N  ++V    A+++      + ++++I            G  G  +  
Sbjct: 881  IGSGWSTQIPPFNPVDIVKNIRALMNG-----EEMVDMIP--------WFKGWEGTISRI 927

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADL 299
                G    R   +IE+   D   + +TE+P ++    M E + + +   +K+   I D+
Sbjct: 928  ----GPDKFRMEGNIEEI--DDTTVEITELPARMWTITMKEFLLQAIAGSDKQKPWIKDM 981

Query: 300  RDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIG 356
             +E    G + V+ L +          L   ++  S+ +  ++      G   +   +  
Sbjct: 982  -EEQHGVGIKFVVTLSKEEMEKTRRIGLKERFKLISIINTSNMVAFDPQGRIKKYDHVNQ 1040

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA--R 414
            I++ +   R +   RR  Y+   A   ++    L+     +  ++       N +     
Sbjct: 1041 IIEDYYLVRLDYYQRRKDYM---ADLFSNQFEKLSYQAKFVKMIIDRELNINNKKRVNLV 1097

Query: 415  RELMQRSWNASD-----IKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELR 461
            +EL Q  +   D     I+      +D    I        + VQ           +L + 
Sbjct: 1098 KELKQLGFPGFDKHNKPIRPTELKEEDDEEDINELAADPTAVVQEKKTAVSAYDYLLGMP 1157

Query: 462  LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            L  LT    + +  + +    E+   L    S   L        L   D+ 
Sbjct: 1158 LWSLTSERYEKLLKQRDEKEAELNNLLR--KSAKDLWNEDLDVFLEEWDKF 1206


>gi|213024898|ref|ZP_03339345.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 161

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/161 (62%), Positives = 126/161 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 1   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 60

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 61  AHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 120

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           ++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ 
Sbjct: 121 INGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEE 161


>gi|217069481|gb|ACJ83229.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 201

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/199 (54%), Positives = 148/199 (74%), Gaps = 1/199 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 4   LAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 63

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 64  LIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKVRAKTHIE 123

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 124 -KRVNKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRVVIELKRD 182

Query: 318 ASADVILNQLYRYTSLQSL 336
           A ++++LN L++ T+++  
Sbjct: 183 AMSEIVLNNLFKSTTMEIT 201


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 182/481 (37%), Gaps = 46/481 (9%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            TE   S  E     +  + I+D +    + +++   L R+I  + DGLKP  R++L+   
Sbjct: 624  TEKKASELEVPYGNVERLGISDFIHKDLVNFSL-ADLKRSIAHVSDGLKPSQRKVLYACF 682

Query: 62   QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
               +    K  + A    E    +H  G  ++ D + ++A ++  S  + L+E  G FG+
Sbjct: 683  TKNLTSEMKVAQLAAYVSEKTSYHH--GEVSLADTIVKLAHNFTGSNNINLLEPCGQFGT 740

Query: 120  --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
              + G   +  RY   +L K+A  L D      +++  + DG   EP       P VLVN
Sbjct: 741  RLMGGKDASQTRYIFTKLTKSARILFDPKDDPVLNYLDD-DGKQIEPDYYVPILPTVLVN 799

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G ++ IP  N  ++      +I+  ++           P  P      GR   
Sbjct: 800  GTEGIGTGFSSYIPPFNPSDIKHNIERIINGENV----------IPMKPWFDKFTGRV-- 847

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
               ++   G  +  GV          + ++VTE+P         E +  L+ +K+   I 
Sbjct: 848  ---FSNEDGLWITEGVW-----KSSGKSVIVTELPPGRWTQDYKEYLDTLIEKKK---IT 896

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            +  + S        IE   G      + + ++      + ++++        +  +   I
Sbjct: 897  NYVNNSTTDDVNFSIEGYTGND----IIKDFKLQKTFHVSNMHLFHPTKGIHKYESPEEI 952

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            L  FV  R E   +R  +L+   +++   L  ++  +  +     I+      E  R   
Sbjct: 953  LTDFVKIRSETYKKRKTHLICVLKEKTKKLENMSKFIDMVIHEKLIVFRRKRVELERE-- 1010

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     ++ + D ID S   + +  T   ++   ++I E        L      + +
Sbjct: 1011 ---------MEKIFDKIDGSYEYLLNIKTYQYTDEAIQSIREETSKSRIELDTLQQMSHI 1061

Query: 478  N 478
            +
Sbjct: 1062 D 1062


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 171/433 (39%), Gaps = 37/433 (8%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            K   SVS TD +    + ++ N    R+IP L DGLKP  R+++F   +     +K+ VK
Sbjct: 692  KDTKSVSYTDFVNLELVLFS-NADNIRSIPCLVDGLKPGQRKVMFTCFKRN---DKREVK 747

Query: 74   CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
             A+++G V     + HG  ++   +  +AQ++  S  + L+E +G FG+    G   A+ 
Sbjct: 748  VAQLAGSVAEMSAYHHGEVSLCMTIVNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSASP 807

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   ++      + +      +      D    EPV      P VLVNG  GI  G  T
Sbjct: 808  RYIFTKMSPLTRMIFNPSDDYLLK-HEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWMT 866

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP +N  E+V    A++D  +               PT  V   +  I +    G    
Sbjct: 867  KIPNYNPRELVKNIRAMLDQEE---------------PTNMVPWYKNFIGSIVDCGDNRY 911

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            V  G    E       ++ +TE+P         E + E +    EK    I D ++ +  
Sbjct: 912  VASG----EIAIIGDNRVEITELPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNTD 967

Query: 306  QGYRVVIELKRGASA----DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
               + +I    G       +  L++ ++  SL S  S+ +    G      ++  ILK +
Sbjct: 968  TTVKFIITFLPGQLETLENEAGLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDILKDY 1027

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R  +  +R  YL    +  A  L   A  +    +   ++      +    EL++R 
Sbjct: 1028 YKLRLTMYQKRKDYLEGMLKAEASKLSNQARFIMEKCDRTLVVENKK-RKVIIDELIKRG 1086

Query: 422  WNASDIKDLIDLI 434
            +    +KD    +
Sbjct: 1087 YEPDPVKDWKQRV 1099


>gi|217069479|gb|ACJ83228.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 185

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 143/186 (76%), Gaps = 1/186 (0%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG + +IDN
Sbjct: 1   DTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYIIDN 60

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE    +++ IV+
Sbjct: 61  KEASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE-KRANKDIIVI 119

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+PYQ NKA ++E+IA+LV+EK+I  I+++RDESDR+G RVVIELKR A ++++LN L+
Sbjct: 120 DELPYQTNKARLIEQIADLVKEKQIEGISEIRDESDREGIRVVIELKREAMSEIVLNNLF 179

Query: 329 RYTSLQ 334
           + T+++
Sbjct: 180 KSTAME 185


>gi|29691136|gb|AAO91620.1| DNA gyrase A subunit [Pectobacterium atrosepticum]
          Length = 183

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL++  RL+ +I+
Sbjct: 14  RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNNPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILT 802
           A+  E +  + +      +I  + E I +  +D     +  N S+   ++L  +E  ++T
Sbjct: 53  AEIAELLYILNNPERLMEVIREELEAIKTQYSDERRTEITANTSDINIEDLINQEDVVVT 112

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 113 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 169

Query: 863 IRVPVNEIRIASR 875
             + V ++  ASR
Sbjct: 170 YWMKVYQLPEASR 182


>gi|29691132|gb|AAO91618.1| DNA gyrase A subunit [Pectobacterium betavasculorum]
          Length = 183

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802
           A+  E +  +        +I  + E I +  +D   + +  N ++   ++L  +E  ++T
Sbjct: 53  AEIAELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVT 112

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 113 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 169

Query: 863 IRVPVNEIRIASR 875
             + V ++  ASR
Sbjct: 170 YWMKVYQLPEASR 182


>gi|310751822|gb|ADP09360.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751824|gb|ADP09361.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751826|gb|ADP09362.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751828|gb|ADP09363.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751830|gb|ADP09364.1| DNA gyrase A [Pseudomonas andersonii]
          Length = 142

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 113/142 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + PN+L+NG  GIAVGMATN
Sbjct: 121 PTKVPNLLINGSSGIAVGMATN 142


>gi|311993520|ref|YP_004010385.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
 gi|295917477|gb|ADG60148.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
          Length = 447

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 191/483 (39%), Gaps = 45/483 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T   +T  + N    YA+  +  RAIP+L DGLKPV R +L+  +Q+    + K+ K A
Sbjct: 3   LTDRELTQIINNEAKIYAMYTVENRAIPNLIDGLKPVQRFMLYRAIQLAKGKSDKFHKLA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            ++G V    + HG  +  +A A MA  W+     ++GQGNFGS      AA RY  CR+
Sbjct: 63  SVAGGVADAGYHHGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQQAAASRYIFCRV 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +  + +  D          + D     P       P VL+NG  GIA G +T+I  H+ 
Sbjct: 123 SENFNKVYKDTEIAP----EHEDLEHLPPRFYLPIIPTVLLNGVRGIATGYSTSILPHDF 178

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             +V      ++   +     M  +  P F               Y T      + G  +
Sbjct: 179 ESIVRCTEQALNGETVS----MPTVAFPQFRG-----------EVYCTEPNKYELHGTYN 223

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
                  + Q+ ++EIPYQ ++A  +EK+ + + +     +    D+  ++G+   I+ +
Sbjct: 224 F----TSKTQMYISEIPYQFDRAKYVEKVLDPLED---AGLITYDDDCSKEGFGFKIKFR 276

Query: 316 RGA----SADVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFREEV 368
           +          +  ++ R   L    S N+V ++              +++ FV  R   
Sbjct: 277 KDYKLPTDVTELDEKIKRDFKLVERVSQNIVVIDENGKLHDRFENSAQLVEHFVKVRLSF 336

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V +R  +++ K++    +    A+ +  +    +I          + EL Q         
Sbjct: 337 VEKRIGFMIEKSKHAFELAYAKALFIREVTNE-KIQVKGKKRSELKEELAQ--------- 386

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             +  +      + +    +++E +   +L+        +      + L     +IKE  
Sbjct: 387 --LPALAGFEDQLLAMNIFHMTEDEMANLLKKAKEAKEQMDYWKSTDALTEYKNDIKELK 444

Query: 489 DIL 491
            IL
Sbjct: 445 SIL 447


>gi|208972181|gb|ACI32674.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 138

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/136 (62%), Positives = 112/136 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGS 160
           DL K+TVDF  NYDG+
Sbjct: 121 DLEKETVDFVDNYDGT 136


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 184/485 (37%), Gaps = 39/485 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +VS  D +    + ++ N    R+IP   DGLKP  R++L+   +  +   K  +K A++
Sbjct: 687  NVSYEDFINKEMIHFS-NADNIRSIPSAIDGLKPSQRKVLYACFKRKL---KSEIKVAQL 742

Query: 78   SGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
            +G       + HG A++   +  MAQD+  S  + L+   G FG+  + G   A+ RY  
Sbjct: 743  TGYCAEHTAYHHGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIY 802

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
              L   A  L  +     + +  + DG   EP   C   P ++VNG  GI  G +T IP 
Sbjct: 803  TYLAPIARSLFPEADDTLLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPP 861

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            H+  +V++  +A +D      + L +I             G  G       G G +    
Sbjct: 862  HSANDVLEYILAKLDG----AERLPKI--------HPFARGFQGRIEPDPNGNGYVSFGR 909

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             S I         I++ E+P +         + ++     +    +  + S       + 
Sbjct: 910  SSCI-----SDRTILIDELPLRCWTNKYKGILLKMRDRGEVTSFVENHNTSKVSFLVTLK 964

Query: 313  ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
              +        L + ++  +     +++    +G   +  T   I++AF   R ++   R
Sbjct: 965  SAQLARMTQAGLEKSFKLKTNLQTTNMHAFNKDGQICKFDTAESIVEAFFPVRMQLYQDR 1024

Query: 373  T---KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW------N 423
                + LLN          G   AV      + +     + +   ++L +  +      N
Sbjct: 1025 IALLQSLLNYEASILRNKAGFIKAVT--SGDIDLTSGRRSKQETSKKLKEHGFLDSVELN 1082

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            A   ++++      +   G  G+  L  +    +L + L+ LT     ++     +   E
Sbjct: 1083 AIKNENVLWKRRQFASEKGEGGS-NLEPMNFDYLLNMPLSSLTSEKIRELGEHAATKDKE 1141

Query: 484  IKECL 488
            ++E  
Sbjct: 1142 LEEMK 1146


>gi|1296997|emb|CAA64975.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/148 (66%), Positives = 114/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIY AL RMAQ +S
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYGALVRMAQPFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + L L++GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAPFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/452 (20%), Positives = 168/452 (37%), Gaps = 39/452 (8%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      ++   K  + 
Sbjct: 639  SVKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 75   ARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
            A    +    +H  G  ++ D + ++A D+  S  + L+E  G FG+  + G   +  RY
Sbjct: 698  AAYVADKSAYHH--GEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  +
Sbjct: 756  IFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIV 249
            P  N  ++ +     ++              G DF        G  G         G+ +
Sbjct: 815  PPFNPKDIKENIQRSLE--------------GHDFKEMKPWFRGFKGKV---FKEDGTWI 857

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
              GV      +G R  + VTE+P         E +  LV +K I       + S  +   
Sbjct: 858  TEGVWR---DTGSR--LKVTELPPGRWTQDYKEYLDTLVEKKVISG---FTNNSTTEDVD 909

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
              I    G     +L  L +        ++++        +  +   ILK FV  R +  
Sbjct: 910  FEIMGYTGKD---VLKDL-KMRKSFHTSNMHLFHPTKGIYKYSSPEEILKDFVDLRLDHY 965

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +R ++L+ K       + G       +     I+ F    +   R+L Q         D
Sbjct: 966  KKRKEHLI-KVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIGGTYD 1024

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
             +  I    YT      +     Q R  LE+ 
Sbjct: 1025 YLLNIKTVQYTEECVRELLREAKQAREELEVM 1056


>gi|29691128|gb|AAO91616.1| DNA gyrase A subunit [Erwinia pyrifoliae]
          Length = 183

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/176 (46%), Positives = 115/176 (65%), Gaps = 1/176 (0%)

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           ++SY I  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  
Sbjct: 8   EASYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIAELLRILGSSE 66

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS 
Sbjct: 67  RLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSD 126

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  + 
Sbjct: 127 YEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEANR 182



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 89  TEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 148

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
             L+     N +D I+  S +G L  + V ++  A+R
Sbjct: 149 DRLLVA---NTHDTILCFSSRGRLYWMKVYQLPEANR 182


>gi|217069493|gb|ACJ83235.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 182

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/181 (57%), Positives = 138/181 (76%), Gaps = 1/181 (0%)

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG +
Sbjct: 3   RDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLL 62

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIE    ++
Sbjct: 63  YLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIE-KKSNK 121

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++++
Sbjct: 122 DIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIV 181

Query: 324 L 324
           L
Sbjct: 182 L 182


>gi|29691130|gb|AAO91617.1| DNA gyrase A subunit [Erwinia amylovora]
          Length = 183

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 14  HNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  + 
Sbjct: 134 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEANR 182



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 89  TEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 148

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
             L+     N +D I+  S +G L  + V ++  A+R
Sbjct: 149 DRLLVA---NTHDTILCFSSRGRLYWMKVYQLPEANR 182


>gi|32453746|ref|NP_861955.1| DNA topisomerase II medium subunit [Enterobacteria phage RB69]
 gi|32350565|gb|AAP76164.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage RB69]
          Length = 441

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/423 (23%), Positives = 166/423 (39%), Gaps = 32/423 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S ++   + N  L YA+  +  RAIP++ DG KPV R ++   + +     +K+ K A
Sbjct: 3   LNSRNLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKLA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I+G V    + HG ++  DA A MA  W+    L++GQGNFGS      AA RY   R+
Sbjct: 63  SIAGGVADLGYHHGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIFARV 122

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K  + +  D          + D     P       P VL+NG  GIA G ATNI  H+ 
Sbjct: 123 SKNFYNVYKDTEYAP----AHEDKEHIPPKFYLPIIPTVLLNGVSGIATGYATNILPHSF 178

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             V    +  +   ++            +FP           +       G   I G   
Sbjct: 179 KSVKKAVLQALQGKNVTK-------PKVEFPEF---------RGEVHEVDGRYEIHGTYK 222

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIEL 314
                  R Q+ +TEIPY+ ++   + K+ + + +K ++   D   E       +   E 
Sbjct: 223 F----TSRTQMQITEIPYKFDRETYVSKVLDPLEDKGLISWEDDCGEHGFGFKVKFRKEY 278

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRR 372
                 ++   ++ +  SL    S N+  +N  G       ++ ++K FV  R+  V +R
Sbjct: 279 SLPDDEELRHEKIMKDFSLIERRSQNITVINEKGKLAVYDNVVDLIKDFVEVRKTYVQKR 338

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDL 430
                NK  +              + +V+   I+      +    EL Q       +  L
Sbjct: 339 ID---NKILESEKAFKLAFAKAHFIKKVISGEIVIQGKTRKALTEELAQIEMYKEHVDKL 395

Query: 431 IDL 433
           + L
Sbjct: 396 VGL 398


>gi|56554393|pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
           Topoisomerase Iv
          Length = 323

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 147/370 (39%), Gaps = 63/370 (17%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED++VTV+  GYVKR  L  Y A             +D D +      +T   +L F++ 
Sbjct: 5   EDVIVTVTKDGYVKRTSLRSYAASNG-----QDFAXKDTDRLLAXLEXNTKDVLLLFTNK 59

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G      V  LP    +  G+ + NI+ +++ E I   +P  + E    N Y +F T++G
Sbjct: 60  GNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFEL---NGYFLFVTRNG 116

Query: 656 NVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            V++ +L  +     S     + L + D+++ V      N++ L T  G  + F  S + 
Sbjct: 117 XVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGXNELFLVTHNGYALWFDESEVS 176

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           +   R + GV+G +L +GD ++S  ++   D                             
Sbjct: 177 IVGVR-AAGVKGXNLKEGDYIVSGQLITSKDES--------------------------- 208

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    I+  +++G  K+    +F  + R+ +G+      K
Sbjct: 209 -------------------------IVVATQRGAVKKXKLTEFEKATRAKRGVVILRELK 243

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N    +       D+D I L ++K  +  + V +IR + R + G  +    ++ RV+SV
Sbjct: 244 ANPH-RISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISV 302

Query: 895 ERIRESEIVD 904
            ++   +  +
Sbjct: 303 WKVEAEDKTE 312


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/452 (20%), Positives = 168/452 (37%), Gaps = 39/452 (8%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      ++   K  + 
Sbjct: 639  SVKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 75   ARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
            A    +    +H  G  ++ D + ++A D+  S  + L+E  G FG+  + G   +  RY
Sbjct: 698  AAYVADKSAYHH--GEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  +
Sbjct: 756  IFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIV 249
            P  N  ++ +     ++              G DF        G  G         G+ +
Sbjct: 815  PPFNPKDIKENIQRSLE--------------GHDFKEMKPWFRGFKGKV---FKEDGTWI 857

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
              GV      +G R  + VTE+P         E +  L+ +K I       + S  +   
Sbjct: 858  TEGVWR---DTGSR--LKVTELPPGRWTQDYKEYLDTLMEKKVISG---FTNNSTTEDVD 909

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
              I    G     +L  L +        ++++        +  +   ILK FV  R +  
Sbjct: 910  FEIMGYTGKD---VLKDL-KMRKSFHTSNMHLFHPTKGIYKYSSPEEILKDFVDLRLDHY 965

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +R ++L+ K       + G       +     I+ F    +   R+L Q         D
Sbjct: 966  KKRKEHLI-KVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIGGTYD 1024

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
             +  I    YT      +     Q R  LE+ 
Sbjct: 1025 YLLNIKTVQYTEECVRELLREAKQAREELEVM 1056


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 167/451 (37%), Gaps = 37/451 (8%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      ++   K  + 
Sbjct: 639  SVKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697

Query: 75   ARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERY 130
            A    +    +H  G  ++ D + ++A D+  S  + L+E  G FG+  + G   +  RY
Sbjct: 698  AAYVADKSAYHH--GEVSLADTIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTRY 755

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  +
Sbjct: 756  IFTKLTKEARKIFDPRDDPILNYLDD-DGRSIEPDFYMPTIPMVLVNGTEGIGTGFSCYV 814

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P  N  ++ +     ++                         G  G         G+ + 
Sbjct: 815  PPFNPKDIKENIQRALEGHSFKD-------------MSPWFRGFKG---KIFKEDGTWIT 858

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             GV      +G R  + VTE+P         E +  L+ +K I       + S  +    
Sbjct: 859  EGVWR---DTGSR--LKVTELPPGRWTQDYKEYLDILIEKKVISG---FTNNSTTEDVDF 910

Query: 311  VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
             I    G     IL  L +        ++++        +  +   ILK FV  R E   
Sbjct: 911  EIMGYTGKD---ILKDL-KLRKSFHTSNMHLFHPVKGIYKYSSPEEILKDFVDLRLEHYK 966

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            RR ++L+ K  +    + G       +    +I+ F    +   R+L       +   D 
Sbjct: 967  RRREHLI-KVLEVRSKMCGYKSKFVTMVIEGQIVVFKRKKDDLERQLAGIFPKINGTYDY 1025

Query: 431  IDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
            +  I    YT      +     Q R  LE+ 
Sbjct: 1026 LLNIKTVQYTEECVRELLKESKQAREELEVM 1056


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 182/493 (36%), Gaps = 44/493 (8%)

Query: 20   SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            S  D +    + ++ +    R+IP   DGLK   R++LF  ++  +    K  + A    
Sbjct: 654  SYKDFVNQELIQFS-HADNTRSIPSAIDGLKTSQRKVLFACLKRKLFQEMKVAQLAGYCS 712

Query: 80   EVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRL 135
            E    +H  G A+++  +  MAQD+  S  + L+   G FG+    G   A+ RY   +L
Sbjct: 713  EHTAYHH--GEASLHSTIVNMAQDYVGSNNITLLYPSGQFGTRLQGGKDAASPRYIFTKL 770

Query: 136  QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             K    +  +     +++  + DG   EP       P +L+NG  GI  G +T IP HN 
Sbjct: 771  NKHTRLIYPEEDDALLNYNDD-DGISVEPQYYVPIIPMLLINGSEGIGTGWSTYIPNHNP 829

Query: 196  GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             EV+D  + ++D+ +     +      P F      +   G++    T +G+I     + 
Sbjct: 830  IEVIDRMLHLLDSSNSRDHGVPPASLLPWFRGFRGSIEAAGLQTY--TTQGTIRHLNPTT 887

Query: 256  IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            +E            E+P         + + + +++K I    +   E   +     I+L 
Sbjct: 888  LEIL----------ELPIGKWIDDYKKTLWDFLQKKLIRSFTEHHSE---EHVCFRIQLS 934

Query: 316  RG------ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            R         + + L + ++  S  +  +++    N       +   ++KAF+  R ++ 
Sbjct: 935  RADSTFFLDMSPIELVRFFKLESKLNTNNMHAFDPNYTLQRFSSSDDVIKAFLPVRLDLY 994

Query: 370  VRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVR-IIRFSPNPETARRELMQRSWNASDI 427
             RR +YL+ K + D   +   +          ++ I+            L  + +     
Sbjct: 995  NRRKEYLVKKQQCDVLELQNRVRFIAQVSAGDLQCILTRKMTKHQVAAVLDSQGYTPEQE 1054

Query: 428  KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                   D+ S                  +L + +   T    + +  E      E+++ 
Sbjct: 1055 F----RYDEKSTNDNPASDF-------DYLLNMSMWSFTLDKANRLEKEHLERLTELRKL 1103

Query: 488  LDILSSRSRLLGI 500
                ++   +   
Sbjct: 1104 QK--TTPEEMWRR 1114


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1645

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 124/647 (19%), Positives = 229/647 (35%), Gaps = 82/647 (12%)

Query: 9    DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            D   +    S+   D +    + ++      R+IP++ DGLKP  R++L+ + +  +   
Sbjct: 796  DYSMDNICRSLRYRDFIDKELVLFSRY-DTARSIPNVIDGLKPGQRKVLYSVFKKKLNNE 854

Query: 69   KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDP 124
             K  + A    E    +H  G A++   +  MAQD+  S  L L++  G FGS    G  
Sbjct: 855  MKVAQLAGYVAEHSAYHH--GEASLQSTIVNMAQDFVGSNNLNLLQPCGQFGSRKEGGKD 912

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             +A RY   +L     ++  +     + +  + DG   EP+      P VLVNG  GI  
Sbjct: 913  ASAARYIFTKLSTWTRYIFPEADDPLLIYLQD-DGQQIEPLFYVPIIPMVLVNGADGIGT 971

Query: 185  GMATNIPTHNLGEVVDGCVA-VIDNPDIDLDALMEIIRGPDFPTG-------------AV 230
            G + ++P +N  ++++     +  +  + +       +G   P                V
Sbjct: 972  GWSCSVPNYNPKDIINNLKRALRGDIMMPMTPWYRSFKGKVTPIKQKNRKNLSKRKNLTV 1031

Query: 231  ILGRTGIKNAYATGRGSIVIRGVSHIE---------------------------KTSGDR 263
             L    I  ++  G  S  I G S  E                               D 
Sbjct: 1032 KLQDNNIDISHNNGTVSHTITGCSQSELDEDHVILTIDPDDNLELGANYETFGNWYRKDD 1091

Query: 264  EQIVVTEIPYQVNKAAMLEKIAELV---------REKRIVDIADLRDESDRQGYRVVIEL 314
            E +++TE+P +       E +   +          +     I D RD S      + I +
Sbjct: 1092 ETLIITELPVRRWTQDYKEWLESTLLPPLNTPEGDDIDHSWIMDYRDNSSHDSVHITIRI 1151

Query: 315  KRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            K           + ++++  S  S  ++ +   N +     T + ILK F+  R ++  +
Sbjct: 1152 KPDKFIQAENEGIEKVFKLKSTLSTSNMTLFDNNSHIVRYETELDILKEFIPTRLQMYEK 1211

Query: 372  RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            R +YLL+K      +L    I   NL    R+   + +     +EL + +  +     L+
Sbjct: 1212 RKRYLLSKLNYERVILEQ-KILFLNLVIEDRMKISNKSRSILVQELKKNNLKSLKDIQLL 1270

Query: 432  DLIDDSSYTIGSDG------TMYLSEVQT----------RAILELRLARLTGLGRDDIRN 475
               ++    +  D        +  +  Q             +L L L  LT    + +++
Sbjct: 1271 TEWNNFKNVVTVDQLESNNLDVDCNNEQIPCVDDEIKEFDYLLSLPLWSLTTERMELLKD 1330

Query: 476  ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            ELN    E        +S   L      ELLSV +  +T R   ++E       +   + 
Sbjct: 1331 ELNKKIAEYNNLKK--TSIEDLWNKELDELLSVIECEETKR--EVIEMEHKKLIQKRRLS 1386

Query: 536  EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
             D     S     KR   +  +  +   K  +      +D+  D   
Sbjct: 1387 IDWSDKKSKGKEKKRKKSNSTKLSKYISKKSNIFYDNSDDYCEDNIE 1433


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 109/558 (19%), Positives = 199/558 (35%), Gaps = 67/558 (12%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +  + SV+    +    + +++     R+IP L DG KP  R++LF   +  ++   
Sbjct: 681  THADYNVESVTYESFINKELILFSME-DNKRSIPCLVDGFKPSQRKVLFSCFKRNLKKEI 739

Query: 70   KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPP 125
            K V+ A    E    +H  G  ++   +  MAQ++  S  L L+   G FG+  + G   
Sbjct: 740  KVVQLAGYVSEHSAYHH--GETSLNGTITAMAQNFTGSNNLNLLTPGGQFGTRLMGGKDA 797

Query: 126  AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            A+ RY    LQKAA  +        + +  + DG   EP       P +LVNG  GI  G
Sbjct: 798  ASPRYIFTALQKAARAVFHPDDDALLTYLDD-DGLSIEPEFYMPIIPLILVNGSDGIGTG 856

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF-PTGAVILGRTGIKNAYATG 244
             ++N+P ++  +V++               L   I+G  F        G  G   A   G
Sbjct: 857  WSSNVPNYSPHDVIEN--------------LKRRIKGDKFVEMQPWYKGFAGSIEA-KVG 901

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVD------ 295
            +                D   + +TE+P   +  +    LE +     + +  D      
Sbjct: 902  KKGFEGSYTVRGIANRIDDTTVEITELPVRKWTQDYKQFLESLLPGAEDAKSKDAKGNGK 961

Query: 296  ------------------IADLRDESDRQGYRVVIEL-KRGASADVILNQLYRYTSLQSL 336
                              I D ++          + +      A    + LY++  L+S 
Sbjct: 962  GKGKGKGAADKDKSPTRCIKDFKENHTDTTVHFTVTMSMEDLDALEKGDGLYKFFKLESS 1021

Query: 337  FSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
             S N + L   +G+     +   I++ F+  R E   RR   LL+K +     L      
Sbjct: 1022 VSTNNMVLFDQDGHLERYESPQHIMEEFITLRSEFYGRRKTSLLSKLQSEWSKLDNKVRF 1081

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            +  + E  R+   +        +L +  ++        + +   +    G DG    +  
Sbjct: 1082 ILAVVED-RMQVNNRKKSELLEQLKREGYDLFLPTTSKLRVAGGAEDGEGEDGNEESAAD 1140

Query: 453  QT-------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
             +         +L +++  LT      + NEL     E++       S   L  +    L
Sbjct: 1141 DSDTLSKGYDYLLGMKIWSLTLERVKLLENELEGKAEEMRILKATAPSELWLKDL--DAL 1198

Query: 506  LSVKDELDT-PRRTRIVE 522
              V DE+D   R+  + +
Sbjct: 1199 GDVLDEIDDIIRKQEVED 1216


>gi|192382652|gb|ACF04347.1| GyrA [Neisseria meningitidis]
          Length = 147

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 111/141 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           +A++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ 
Sbjct: 7   FAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDT 66

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV
Sbjct: 67  AVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETV 126

Query: 152 DFRPNYDGSFQEPVVLCARYP 172
           +F PNYDGS  EP+VL   +P
Sbjct: 127 NFGPNYDGSEHEPLVLPDPFP 147


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 182/519 (35%), Gaps = 70/519 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++    +SI+D +    + +++     R+IP L DGLKP  R+++F   +  +
Sbjct: 630  FEPGTFLDQSQPQISISDFVNKELILFSM-ADNIRSIPSLVDGLKPGQRKVMFSCFKRNL 688

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
                  +K A++ G V     + HG  ++   +  +AQD+  S  + L+   G FGS   
Sbjct: 689  RSE---IKVAQLVGYVSEQSAYHHGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQ 745

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L      + ++     + +  N D    EP       P VLVNG  
Sbjct: 746  GGKDAASPRYIFTSLSPLTRLIFNENDDAILSYL-NDDNLSIEPEFYVPIIPMVLVNGAE 804

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T+IP  N  +VV+    +I       +  +E+I                    
Sbjct: 805  GIGTGWSTSIPNFNPVDVVENIRRLIRG-----EDPVEMIP------------------Y 841

Query: 241  YATGRGSI--VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            Y   RG+I  V  G   +         + ++E+P         E +  LV+      + D
Sbjct: 842  YRNFRGTIEKVGEGKYQVSGIYEGDMDLEISELPVGTWTLNYKEFLESLVQAGV---VKD 898

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             ++    +     ++L +  S         + ++  ++ ++     N    +  T   IL
Sbjct: 899  FKEYHTEKTVSFSVKLSKSISN-------LKLSTTITINNMVCFDENLGIKKYSTPQEIL 951

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            K F   R      R + +L   ++    L      +  +     ++           +L 
Sbjct: 952  KEFYDVRLRYYSIRKENMLKVMKEELVKLENKVRFIKEVSTG-ELVISRRRKGEVIFDLE 1010

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNE 476
             R +           +DD  Y +            + +IL L + R+  L  +      E
Sbjct: 1011 SRRY---------ARVDDYEYLL------------SMSILSLTVERIEKLNNEHAKKLEE 1049

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
             N L  +  + L +          +K      K+  D  
Sbjct: 1050 YNKLESKTPKELWLDDLEVFEREYLKIVERETKE-YDDE 1087


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/525 (17%), Positives = 188/525 (35%), Gaps = 52/525 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + I+D +    + +++     R+IP++ DG KP  R++++G  +  +    K  
Sbjct: 663  DPRLTEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVIYGSFKRNITSEIKIS 721

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
              A    E    +H  G  ++   +  +AQ +  S  + ++   G+FG+    G   AA 
Sbjct: 722  TLANYVAEQTDYHH--GPDSLAQTIIGLAQSFVGSNNIYVLNPIGSFGTRATGGKDAAAP 779

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +         ++    + + +    L    P +L+NGG GI  G +T
Sbjct: 780  RYISTELTKITRKIFHPFDDPLYNYLQEDENTVEPEWYLP-ILPMLLINGGEGIGTGWST 838

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            NIP  N  ++V     +++      + L E              G TG         G  
Sbjct: 839  NIPPFNPLDIVRNLRHLMNG-----EELEE--------MHPWFRGWTGTIEKI----GPQ 881

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+T      + +TE+P ++  + + E +   +   +K    I DL ++    
Sbjct: 882  RYRVYGRIEQT--GPCALEITELPARMWTSTLKEHLLLGLGGNDKMKPWIKDLEEQHGNG 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAF 364
               VV   +       ++    R+  + ++   NMVA   +G   +   +  IL  F   
Sbjct: 940  IRFVVRLTQEEMDKTRVMGFYERFKLISTISLNNMVAFDPHGKIKKYENVSEILTEFYYV 999

Query: 365  REEVVVRRTKYLLNKARDRAH-----------VLVGLAIAVANLDEVV----RIIRFSPN 409
            R E   +R  Y+  + +               ++ G         + +        F   
Sbjct: 1000 RLEYYQKRKDYMSERLQWEVEKLSFQIKFIKLIIEGEMSITNRPRKQIIADLEEKGFPRF 1059

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
             +  +   M+ S   ++ ++     D+       +G   +       +L +++  LT   
Sbjct: 1060 NKEGKPSYMKISEKDTEEEEGEKGEDEEEVEGVINGPEEV-YGSFEYLLGMKIWALTRER 1118

Query: 470  RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             + +   L        E   +L   ++   +   +L       D 
Sbjct: 1119 YEKL---LKQKQDRQVELETLLQYSAK--DLWSMDLDEFVTAYDK 1158


>gi|311992987|ref|YP_004009854.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
 gi|295815276|gb|ADG36202.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
          Length = 465

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 193/475 (40%), Gaps = 38/475 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
                 +   + N  L YAI  +  RAIP+L DG KPV R +++  ++M    ++K+ K 
Sbjct: 22  NSVDRELDSIINNEALAYAIYTVENRAIPNLMDGFKPVQRFMVYRALEMAKGNHQKFHKL 81

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A ++G V    + HG  +  +A A MA  W+     ++GQGNFGS      AA RY  CR
Sbjct: 82  ASVAGGVADAGYHHGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQEAAASRYIFCR 141

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      +  D+         + D     P       P VL+NG  GIA G +T+I  H+
Sbjct: 142 ISDNFRKVFKDIEIAP----QHEDEEHLPPKHYLPVIPTVLLNGVRGIATGYSTSILPHS 197

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L  V++     +         +        FP            N   T  G   ++GV 
Sbjct: 198 LESVIECTRLALQGKLDKEPEVA-------FPQFNG--------NIVKTEDGKYELQGVY 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                   + Q+ ++EIPY  ++A  +EK+ + + +K         D+  + G+   ++ 
Sbjct: 243 KF----TSKTQMYISEIPYSFDRAKYVEKVLDPLEDK---GFITYDDDCSKHGFGFKVKF 295

Query: 315 KRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREE 367
           ++         ++  ++ R   L       +V ++       +      ++K FV  R++
Sbjct: 296 RKDYKLPEDEGLMHEKIMRDFKLTEKVPQYIVVIDENGKLNDKFENASDLIKYFVEVRKK 355

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V  R ++++NK   +  + +  A+ +  ++    +I+        + EL + S      
Sbjct: 356 YVKGRIEFMINKTERQFKLAIAKAMFIKTVNNGETVIKGKK-KSELKEELSKISVFQGFE 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             L+ +   + Y +  D  + L E    A  EL   + T +  +    +L+ L  
Sbjct: 415 DQLLAM---NLYHLTDDEVVRLREAAHAAKTELDYWKETTVQIE-YEKDLDELSK 465


>gi|1296999|emb|CAA64976.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 99/148 (66%), Positives = 115/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + L L++GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|260807655|ref|XP_002598624.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
 gi|229283897|gb|EEN54636.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
          Length = 1181

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 150/369 (40%), Gaps = 35/369 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    ++  + +    + ++ +    R+IP L DGLKP  R++LF  ++     +K+ VK
Sbjct: 148 KDTKYLTFNEFVHKELVLFSNS-DNERSIPSLVDGLKPGQRKVLFTCLKRN---DKREVK 203

Query: 74  CARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+    G   A+ 
Sbjct: 204 VAQLAGSVAEMSAYHHGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASP 263

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY    L   A  L +   +  ++++ + D    EP       P VLVNG  GI  G +T
Sbjct: 264 RYIFTMLSTLARKLFNTFDEPMLNYQYD-DNQKIEPEWYIPLIPMVLVNGAEGIGTGWST 322

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +P +++ E+++  + +ID  D               P         G        R   
Sbjct: 323 KVPNYDVREIINNMLRMIDGKDP-------------LPMNPSYKNFKGDIEELEENR--- 366

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
               V++ E    D   I +TE+P +       E + E++    EK    I D ++    
Sbjct: 367 ---FVANGEVAILDNNTIEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTD 423

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFV 362
              R V+ +            L++   LQS  +   + L   NG      ++  IL+ F 
Sbjct: 424 TTVRFVVSMTEEQLMKAEAAGLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFF 483

Query: 363 AFREEVVVR 371
             R +  + 
Sbjct: 484 DLRLQWFLN 492


>gi|297242225|gb|ADI24785.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242231|gb|ADI24788.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242235|gb|ADI24790.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 2/182 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 VI 250
             
Sbjct: 181 TF 182


>gi|297242259|gb|ADI24802.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242261|gb|ADI24803.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 126/182 (69%), Gaps = 2/182 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 VI 250
             
Sbjct: 181 TF 182


>gi|297242299|gb|ADI24822.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 2/182 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDILEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 VI 250
             
Sbjct: 181 SC 182


>gi|297242265|gb|ADI24805.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/182 (50%), Positives = 129/182 (70%), Gaps = 2/182 (1%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180

Query: 250 IR 251
           + 
Sbjct: 181 VC 182


>gi|261599189|gb|ACX85657.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 114/157 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           N+D + +EP VL A +PN+LVNG  GI+ G AT+IP 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPP 160


>gi|297242237|gb|ADI24791.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 127/180 (70%), Gaps = 2/180 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 165/458 (36%), Gaps = 36/458 (7%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E     +  ++ITD +    + +++   L R+I  + DGLKP  R++++   Q  ++   
Sbjct: 631  EIPYGDVKQLNITDFVHKDLVNFSL-ADLKRSIAHVADGLKPSQRKVMYSCFQKNLKDEM 689

Query: 70   KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPP 125
            K  + A    E    +H  G  ++ + + ++A D+  S  + L+E  G FG+  + G   
Sbjct: 690  KVAQLAAYVAEKSAYHH--GEVSLAETIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDA 747

Query: 126  AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            +  RY   +L K A  L D      +++  + DG   EP       P VLVNG  GI  G
Sbjct: 748  SQTRYIFTKLTKEARKLFDPKDDAILNYLDD-DGRSIEPDFYMPTLPMVLVNGTEGIGTG 806

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +  IP  N  ++ +     ++                         G  G    +    
Sbjct: 807  FSCYIPPFNPDDIKENIKRSLEGESPID-------------MKPWFRGFKG--KVFKDDV 851

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            G  +  GV      +G R  + VTE+P         E +  LV +K    I    + S  
Sbjct: 852  GLWITEGVWR---DTGSR--LKVTELPPGRWTQDYKEYLDTLVDKK---MITSFTNNSTT 903

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            +     I    G      L +  +        ++++        +  +   ILK FV  R
Sbjct: 904  EDVDFEIFGYSGKD----LIKDLKLRKTFHTTNMHLFHPTKGIYKYTSPEEILKDFVELR 959

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             E   +R  +L++    RA +  G      ++    R++ F    +   +E+        
Sbjct: 960  LEHYKKRKAHLIDVLEKRAEM-CGHKSKFVSMVIEGRLVVFKRKKQDLEKEMSSIFPKID 1018

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
               D +       YT      +     Q    LE  + 
Sbjct: 1019 GNWDYLLNTKTVEYTDERVKALMDEAKQANVDLERMIR 1056


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 183/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D    I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDPENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|297242243|gb|ADI24794.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/181 (50%), Positives = 126/181 (69%), Gaps = 2/181 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 V 249
            
Sbjct: 181 T 181


>gi|297242227|gb|ADI24786.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242253|gb|ADI24799.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242267|gb|ADI24806.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242289|gb|ADI24817.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 91/181 (50%), Positives = 127/181 (70%), Gaps = 2/181 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 V 249
            
Sbjct: 181 T 181


>gi|297242245|gb|ADI24795.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242263|gb|ADI24804.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 129/180 (71%), Gaps = 2/180 (1%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 183/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D    I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDPENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|297242271|gb|ADI24808.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242293|gb|ADI24819.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 127/182 (69%), Gaps = 2/182 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 VI 250
             
Sbjct: 181 SC 182


>gi|310722215|ref|YP_003969039.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
 gi|306021058|gb|ADM79593.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
          Length = 547

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/469 (21%), Positives = 188/469 (40%), Gaps = 37/469 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L +A+  +  RAIP + DG KPV R  ++  ++   +   K+ K 
Sbjct: 102 NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 161

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A ++G V    + HG  +   A   +A  W+  + ++EG GNFGS      AA RY  CR
Sbjct: 162 AALAGGVSEAGYHHGEGSAASAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFCR 221

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +  D+    V      D     P       P VL NG  GIA G AT I  H+
Sbjct: 222 VHQNFWDIYKDISLSPVHP----DPEHLPPRFYLPVIPMVLANGVKGIATGYATTIFPHS 277

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              +V   +A +   +I    +        FP    I+ R   K+    G   +V     
Sbjct: 278 YESLVKCTLAAVKGEEIPEPEVQ-------FPCFKGIVRRINSKSIEIEGLYELV----- 325

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                   + ++++TE+P + ++   +  + +L  + +IV   +   +  R    +  + 
Sbjct: 326 -------GQTKLIITEVPVRYDRLEYVSILDKLEEQGKIVGYKEQTSDGFRFEVTLKRQD 378

Query: 315 KRG----ASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEV 368
           K G     + +V   ++ +  +L+   S N+  L  NG   E      +++ FV +R++ 
Sbjct: 379 KFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLIRDFVEYRKKY 438

Query: 369 VVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             +R  +   KA     +     A     ++E + +   S      + +L+    +  ++
Sbjct: 439 TNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEEKIVLRGKS------KAQLIAEVKSKPNM 492

Query: 428 KDLI-DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                +L+  S Y +  D T  L E   +   E      T    + +++
Sbjct: 493 AGFENELVGMSIYRLTEDETHKLQEEALKQTKEYDYWSSTTPENEYVKD 541


>gi|297242257|gb|ADI24801.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 129/180 (71%), Gaps = 2/180 (1%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARAVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGS++
Sbjct: 121 PPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVI 180


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 195/517 (37%), Gaps = 56/517 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                     +  I  + I++ +    + +++     R+IP + DG KP  R++L+G  + 
Sbjct: 712  QAFRPGTHLDPQIREIPISEFINKELILFSM-ADNVRSIPSILDGFKPGQRKVLYGCFKR 770

Query: 64   GVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV 120
             +      +K A++ G +     + HG  ++   +  +AQ++  +  L L++  G FGS 
Sbjct: 771  NLRSE---IKVAQLVGYISEHTGYHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSR 827

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   +A RY    +      + + L  D   +  + D    EP       P +LVNG
Sbjct: 828  AAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPEAYLPIIPMLLVNG 886

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +TNIP+ N  ++V     +++  +                      G  G  
Sbjct: 887  AEGIGTGWSTNIPSFNPVDIVANIRRMMNGEEPVD-------------MTPWFKGWEGDL 933

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
               +  +  ++      IE+   D + + +TEIP +    ++ E +   +   +   I D
Sbjct: 934  ERISPEKYKVLG----KIEQV--DDDTVEITEIPIKTWTNSVKEFLLAGLGNDK-PWIKD 986

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIG 356
            + ++       VV  LK      + +  L R+  + S+   NMVA +  G   +  +   
Sbjct: 987  MEEQHGINIRFVVRLLKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSANE 1046

Query: 357  ILKAFVAFREEVVVRRT------------------KYLLNKARDRAHVLVGLAIAVANLD 398
            ILK +   R E+  RR                   +++      +  +     + + +  
Sbjct: 1047 ILKDYYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRLEMVDDL 1106

Query: 399  EVVRIIRFSPNPETARRE-LMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-----YLSEV 452
            + ++  RF+ N +    E L++    A + ++    I   +  + +           +  
Sbjct: 1107 KKLKFTRFNKNGKPVHDEPLVEAEELAEEEEEAAGDISQLNLGLVAPEDESQYKPETTYS 1166

Query: 453  QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            Q   +L + +  LT    + +  + +    E+ E L 
Sbjct: 1167 QYDYLLGMAIWSLTRERYEKLLRQRDEKQEELNELLK 1203


>gi|99035108|ref|ZP_01314894.1| hypothetical protein Wendoof_01000268 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 146

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/145 (61%), Positives = 116/145 (80%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY 157
            RLQK +HFLL+D+ ++TV +   Y
Sbjct: 122 ARLQKVSHFLLNDIDENTVRYLATY 146


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 94/512 (18%), Positives = 190/512 (37%), Gaps = 43/512 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           ++D  + + +   + ++ +    + ++  + + R++P+  DGLKP  R++L+ +MQ   +
Sbjct: 135 NTDSRKRENLNQRTYSEFINEELIDFSR-LDIRRSVPNAIDGLKPSQRKVLYTLMQRFEK 193

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDG 122
              + V+ A         +H  G   + + + R+AQD+  S  L L++  G FG+  + G
Sbjct: 194 SEVRVVQLAGAVAHSCAYHH--GEEPLINTIVRLAQDFVGSNNLNLLQPIGQFGTRLIGG 251

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           +  A+ RY    L     ++        + +    D    EP   C   P VLVNG  GI
Sbjct: 252 EDCASARYIYTALSPLVRWIFPRADDSVLSYI-EEDNMRIEPQWFCPIIPMVLVNGAEGI 310

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
             G AT +  +N  +V+     +ID               P           TG     +
Sbjct: 311 GTGWATKVLCYNPKQVIRNVQRMIDGQ-------------PLQKMVPFYRNFTGTIKEAS 357

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GR  I         + +    Q  +TE+P  V      EK+ +++   +   I+  ++ 
Sbjct: 358 EGRFHISGTVTLRPSRKNAHFIQAEITELPVGVWTQRYKEKVLDVLA--KSGIISGYKEL 415

Query: 303 SDRQGYRVVIELKRGASA--------DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 R ++EL +G+             L++  +  ++    S+ +   N        +
Sbjct: 416 HTENAVRFLLELPKGSGIWSSANGGRKHALHKTLKLDTVLGTSSMVLFDENNSLRRFTRI 475

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSPNPETA 413
             I + F   R +  + R  + +     +            A L++ + I   S      
Sbjct: 476 EEIFELFFEVRRQKYIERRDHQIGVLDAKLRFYENQCRFVEAVLNKEITIEGKSRT--DI 533

Query: 414 RRELMQRSWN-----ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
              L QR +      A + +D  +L       +     + LS  + ++++E R A++T +
Sbjct: 534 ESTLRQRHFEPNPLKAPNHEDGNELNKSEFSYLLDMPIIRLSNEEVKSLIESRDAKVTEM 593

Query: 469 GRDDIRN----ELNSLGIEIKECLDILSSRSR 496
                ++        L     +       R R
Sbjct: 594 NMLKGKDWKDMWHEDLRNLTVQLEKDEKKRER 625


>gi|297242281|gb|ADI24813.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/180 (51%), Positives = 127/180 (70%), Gaps = 2/180 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G S D    AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 185/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT    + +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYEKLLKQKQEKETELENLLKL 1149


>gi|297242305|gb|ADI24825.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 127/180 (70%), Gaps = 2/180 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180


>gi|297242269|gb|ADI24807.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 127/180 (70%), Gaps = 2/180 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 195/495 (39%), Gaps = 40/495 (8%)

Query: 12   EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +E+   S++  D + N  + ++ N    R++P++ DGLKP  R++L+   +  +   K  
Sbjct: 689  DERDGNSITYGDFVDNELIHFS-NANNIRSLPNVVDGLKPSQRKVLYACFKRNL---KDE 744

Query: 72   VKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            +K A+++G       + HG A+++  +  MAQD+  S  + L+   G FG+  + G+  A
Sbjct: 745  IKVAQLAGYCAEHTAYHHGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAA 804

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY    L   +  L        ++++   DG   EP   C   P +LVNG  GI  G 
Sbjct: 805  SPRYIFTHLSPLSRLLFPVDDDMLLNYK-EEDGQMIEPEYFCPIIPLLLVNGCQGIGTGW 863

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            +T IP HN  +V++   A +D  +    A+   ++G +   G + +            RG
Sbjct: 864  STFIPQHNPLDVLNYIRAKLD--ETKKPAIRPWVKGFE---GGITVDSK---------RG 909

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              V  G+     T      +V++E+P  V        +  ++++  I   +     +   
Sbjct: 910  DYVTEGI----ITPQKNSSVVISELPVGVWTNDYKATLVAMLKKAEIKSFSQNHTTTTVS 965

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
                V   K        + + ++     S  +++    +       +   I  AF   R 
Sbjct: 966  FNVKVNAAKLNRLLKGDMLKTFKLRKALSTRNMHAFTTDMKIARYNSPEEIADAFFPVRL 1025

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLD-EVVRIIRFSPNPETARRELMQRSWNAS 425
            ++   R   L +     A ++   A  +  +    + ++    + E     L +  ++  
Sbjct: 1026 DLYADRKSVLESNMEYSASLMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEFSKQ 1085

Query: 426  DIKDLIDL---IDDSSYTIGSDGTMYLSEVQT--------RAILELRLARLTGLGRDDIR 474
               D I     I     +       ++S+ ++          +L L L+ LT    D + 
Sbjct: 1086 SELDAIKSNNNIAQRRESSNVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKIDALN 1145

Query: 475  NELNSLGIEIKECLD 489
            ++      ++++  +
Sbjct: 1146 DDAAKTDTKLEQIKN 1160


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 106/541 (19%), Positives = 210/541 (38%), Gaps = 63/541 (11%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            MT+ +       +  I  +S +D +    + Y+      R+IP + DGLKP  R+ILF  
Sbjct: 773  MTQSV-------DHSIKELSYSDFINKELVHYSWAA-NHRSIPSVMDGLKPGQRKILFAC 824

Query: 61   MQMGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIE--GQG 115
             +  +      +K A++SG V     + HG  ++   + +MAQD+  S  + LI   GQ 
Sbjct: 825  FKRNLTHE---IKVAQLSGYVAEHTAYHHGEQSLSSTIVKMAQDFVGSNNIPLISQGGQF 881

Query: 116  NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
                + GD  A+ RY   +L +    + +DL +++++F    +G   +P       P +L
Sbjct: 882  GTRLMGGDDSASPRYIFTKLNQITRLIYNDLDEESLNFL-EEEGESIQPSYYIPIIPMIL 940

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI VGM+ ++P ++  ++++  + +  +    +  L+   RG  F    VI G++
Sbjct: 941  VNGSSGIGVGMSNSVPLYSPIDLIEYLL-LKLSNQRQMKKLIPWYRG--FKGNIVISGKS 997

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                            G+  I      R  + + EIP     +   + + +L+ +  I  
Sbjct: 998  ------------FKTSGLIKI----TGRNSLSIREIPIGKWTSDYKQVLNDLIEQDIIKS 1041

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFT 353
              +   E+           +     +   N+L     L SL   N+     +G   +  +
Sbjct: 1042 FTEENTENTVNFTVSTTYEQMERLEESTENELLSLFKLTSLVHPNLTLFAPDGTVKKYES 1101

Query: 354  LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV-VRIIRFSPNPET 412
            +  I+  F   R +  V+R + ++ K + +          +  +    V+I   S +   
Sbjct: 1102 VEEIVDEFYGVRLDAYVKRRENIMKKLQQQIDKHKVTINFIQLIASGKVKIGGVSKDNVI 1161

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL--GR 470
              ++L  + ++                          + +    ILE+   ++T L    
Sbjct: 1162 --KDLEAKGFHLEG---------------NQQPEETFTYLFNLPILEMTQEKITTLTNLY 1204

Query: 471  DDIRNELNSLGIEIKECL---DILSSRSRLLGIIK-QELLSVKDELDTPR-RTRIVEGLL 525
                 E N++  +  + L   D+L  R  LL     +    V +     R RT   + + 
Sbjct: 1205 TKKTEEFNAIQAQTADNLWKTDLLQLRDALLKDASYKREKEVVEIAPKSRKRTTKQDDVD 1264

Query: 526  D 526
            +
Sbjct: 1265 E 1265


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 185/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNILEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT    + +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYEKLLKQKQEKETELENLLKL 1149


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
          Length = 1178

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 90/483 (18%), Positives = 177/483 (36%), Gaps = 40/483 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +      + ++ +    + Y+  + L R++P++ DGLKP  R++LF M         +  
Sbjct: 710  DSNRNQKTFSEFVNEELVEYS-QLDLRRSLPNVVDGLKPSQRKVLFTMFGRYERGEIRVS 768

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAE 128
            + A    +  G +H  G  ++ + + R+AQD+    +L LLL  GQ       G+  A+ 
Sbjct: 769  QLAGAVSQYCGYHH--GEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVASA 826

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L   A  +        +      + +  EP   C   P +L+NG  GI  G AT
Sbjct: 827  RYIYTSLSPLARAIFPHPDDKVLK-NLVEENALVEPEWYCPIIPMILINGAEGIGTGWAT 885

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             I      +V+     +     ID   L +++       G +          Y T     
Sbjct: 886  KILPRCPRQVISNAQRL-----IDGRPLQDMLPHFRKFQGTI----------YETAPRQY 930

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL-VREKRIVDIADLRDESDRQG 307
             I G     +      + ++TE+P  +      EK+ +  ++   I +  +L  ES+   
Sbjct: 931  SISGKVSYRRLKSG-LRAIITELPTGIWNNKYKEKVLDSAIKNGIISNYEELHTESNVHF 989

Query: 308  YRVVIELKRGASADVI--LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               VI+    +    I  LN+L +  S+ S  S+ +        +  +   I + F   R
Sbjct: 990  ILHVIDKPLLSDKKQIKALNRLLKLRSVASENSMILFDEKNVLQKYDSTREIFQEFFEVR 1049

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +  + R +  L     +   +      V  +     II    N      +L ++ ++++
Sbjct: 1050 RQKYIERRECELVIMEGKLKFIENQVRFVNAIING-EIIIKKKNRAEIIAQLAEKGFDSN 1108

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +K              +      +      +L++ L RL+      ++ + + L    K
Sbjct: 1109 PMKA------------KNATDGNCNPPDFAYLLDMPLCRLSNEEILVLQEKRSQLWERFK 1156

Query: 486  ECL 488
               
Sbjct: 1157 SLK 1159


>gi|297242221|gb|ADI24783.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242255|gb|ADI24800.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 126/182 (69%), Gaps = 2/182 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   L+ ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 VI 250
             
Sbjct: 181 TF 182


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|121533295|ref|ZP_01665123.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
 gi|121307854|gb|EAX48768.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
          Length = 199

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 56/255 (21%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            ATK G V++ +L +F    + G IA+ LD  DE++ V+    E  ILL T+ G  + FP
Sbjct: 1   MATKKGIVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFP 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +RV   R + GV+GI+L  GD V+ M  V                            
Sbjct: 61  ESQVRVMG-RTAHGVKGITLRDGDVVVGMDTVK--------------------------- 92

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     K+  +LTV+E G+GKRT   ++R  +R GKG+  
Sbjct: 93  --------------------------KDGHVLTVTEAGYGKRTPVEEYRQQSRGGKGLIN 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +++  + G ++ +  V    +++L++  G +IR  V+EI +  R T+GV + S  +++
Sbjct: 127 NKITE--KTGKVIGLKVVRPGQELMLITGDGVVIRTKVDEISVTGRNTQGVKVMSVGEND 184

Query: 890 RVVSVERIRESEIVD 904
           RVV++  + +    D
Sbjct: 185 RVVALAAVDKKSDSD 199



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGF 597
           V+TV+  GY KR P+  YR Q RGGKG     + ++   V  L +V     ++  +  G 
Sbjct: 97  VLTVTEAGYGKRTPVEEYRQQSRGGKGLINNKITEKTGKVIGLKVVRPGQELMLITGDGV 156

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           V + KV  + +     +G   + ++S+ + +R+  +    +   S 
Sbjct: 157 VIRTKVDEISVTGRNTQG---VKVMSVGENDRVVALAAVDKKSDSD 199


>gi|17887472|gb|AAL40896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 149

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 115/149 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           PN+LVNG  GIAVGMATNIP H+L EV++
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHDLTEVIN 149


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 182/513 (35%), Gaps = 62/513 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE------------VVRIIRFSPNPE 411
             R E   +R  ++  + +            +  + E            +++ +     P 
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 412  TARRELMQRSWNASDIKDLID--------------LIDDSSYTIGSDGTMYLSEVQTRAI 457
              +           +I + I+                +D+   I     +Y +      +
Sbjct: 1060 FNKEGKPYYGSPKDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EYL 1116

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            L +R+  LT    + +  +      E++  L +
Sbjct: 1117 LGMRIWSLTKERYEKLLKQKQEKETELENLLKL 1149


>gi|297242229|gb|ADI24787.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/181 (49%), Positives = 127/181 (70%), Gaps = 2/181 (1%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  +
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHM 180

Query: 250 I 250
            
Sbjct: 181 F 181


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|208972173|gb|ACI32670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972175|gb|ACI32671.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972179|gb|ACI32673.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 135

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/133 (63%), Positives = 109/133 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGS 160
           K+TVDF  NYDG+
Sbjct: 121 KETVDFVDNYDGT 133


>gi|208972171|gb|ACI32669.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 132

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/132 (64%), Positives = 108/132 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDG 159
           K+TVDF  NYDG
Sbjct: 121 KETVDFVDNYDG 132


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 664  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 722

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 723  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 780

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 781  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 886

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 887  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 940

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 941  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1060 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1115

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1116 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1149


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 170/486 (34%), Gaps = 57/486 (11%)

Query: 9    DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            D +    I  ++I+  +    + ++I     R++P L DGLK   R+++FG   +     
Sbjct: 681  DLDSPNKILQLNISTFINEELIKFSIE-DCKRSLPHLIDGLKESQRKVIFG---LKQWNG 736

Query: 69   KKYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFGSVDGD 123
            K  +K A++   V  K  + HG   ++D + +MAQ +  +  + L+  +GQ       G 
Sbjct: 737  KNNIKVAQLGAFVAQKTDYKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGK 796

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A+ RY         + +        +++    DG    PV      P + +NG  G+ 
Sbjct: 797  DAASPRYIFVNQPPILNKIFRPEDDPILNYTL--DGE---PVFYAPVIPLICINGSVGVG 851

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G + NIP  N  E++DG    I+  +              F       G TG       
Sbjct: 852  TGFSCNIPMFNPSEIIDGLKQWINMREQGEK--------YVFKYKPWYKGFTG--KIEKN 901

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            G G  +  G    E ++    Q  V+E+P  +      E   +         I    + S
Sbjct: 902  GSGRYISYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCDQYRESN---LIKTCDNYS 958

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            +       I  +   + + +     +  S     ++ M    G   +  TL GI++ F  
Sbjct: 959  EVTTVNFKISSEHELTIENL-----KLRSYIHTSNMVMFDHEGKIHKYETLNGIMQRFCK 1013

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++  +R +Y+L K      +       + ++             +  +  L +    
Sbjct: 1014 ERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMN-----------QKIKILLQEDEVV 1062

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               + D+    DD                    +L + +        D + ++++ L  +
Sbjct: 1063 HQQLLDMNYYKDDEGEF--------------DYLLNMNIGGFRKKNVDKLISKIDDLKKD 1108

Query: 484  IKECLD 489
            I    +
Sbjct: 1109 IMWYTN 1114


>gi|66392041|ref|YP_238966.1| gp52 [Aeromonas phage 31]
 gi|62114878|gb|AAX63726.1| gp52 [Aeromonas phage 31]
          Length = 554

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/481 (22%), Positives = 188/481 (39%), Gaps = 50/481 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + S+   + +  L +A+  +  RAIP L DGLKPV R  ++  ++   +   K+ K 
Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A ++G V    + HG  +   A   +A  W+  + ++EG GNFGS      AA RY  CR
Sbjct: 169 AALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCR 228

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +  D+    V   P        P       P VL NG  GIA G ATNI  H+
Sbjct: 229 VHQNFWDIYRDIELAPVHPEP----EHLPPRYYLPVIPMVLANGVKGIATGYATNIFPHS 284

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              ++    A I+   I        ++ P+F                    G I      
Sbjct: 285 YKSLIKCTKAAIEGKPIPRLE----VQFPEF-------------------SGVIRRVSDK 321

Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE         + ++ +TE+P + ++ + +  + +L  + +IV   +      R    +
Sbjct: 322 TIEVEGLYELSGQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYKEQHKNGFRFDVTL 381

Query: 311 VIELKRG----ASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
             + K G     + +    ++ +   L+ + + N+  LN  G   E      +++ FV  
Sbjct: 382 KRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEH 441

Query: 365 REEVVVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           R +    R +Y   K+     +           +D+ + I          + EL+Q   +
Sbjct: 442 RRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDEITIKGKQ------KAELVQEIAS 495

Query: 424 ASDIKDLI-DLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR--LTGLGRDDIRNELNSL 480
             D K    +L+  S Y +  D T  L   Q  AI + +L    +      +  N+L SL
Sbjct: 496 NPDFKGFENELVGMSIYRMTEDETYKL---QDEAIKQGKLYDYWVNTTPEAEYINDLKSL 552

Query: 481 G 481
            
Sbjct: 553 K 553


>gi|294661428|ref|YP_003579881.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
 gi|292660589|gb|ADE34837.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
          Length = 428

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 114/492 (23%), Positives = 187/492 (38%), Gaps = 65/492 (13%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             SI D +Q   LT+A+  I  RAIP L DG KPVHR  +   MQ        + K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAMQ----GGTGFQKVASI 57

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  ++ +AL+ MA  W   + L +  G FGS     P A RY +C+L  
Sbjct: 58  AGGVAMYGYHHGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIKCKLSP 117

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               +  D     V    + D     P       P VLVNG  GIA   ATNIP H+   
Sbjct: 118 IFKAIYMDGDLTPV----HEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPKS 173

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VV+GC+A +++ D  LD      +G    T   I G   ++                   
Sbjct: 174 VVNGCIAYLNDKDFTLDLKYPYFKGEI--TDGTIYGTYELQ------------------- 212

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                + ++V+TEIP + ++   +  + +L  +  IV   DL  E  R    +  E   G
Sbjct: 213 ----GKTKLVITEIPVKYDRVKYIAILDKLEEKGVIVSYKDLSKEDFRYEVTLKREYANG 268

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            + + IL     +  +++      V   G          +LK FV  R  V  +R     
Sbjct: 269 LTREKILKD---FGLIENSNPNINVIFEGKLYSYERPETLLKDFVDIRMNVYQQR----- 320

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                              +++ ++  + + +   A+   + +   + D    +   +  
Sbjct: 321 -------------------INKRIQETKEALDKALAKVAFIAQMVESPDSLRGLSRSEAV 361

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            +     G     E     ++ + +  LT   R  + +E   L  ++K   +       L
Sbjct: 362 KFVSTWIGC----ENHAEMLVAMNIYHLTTDERKKLEDEAEELRKQLKYWEETTPKIEYL 417

Query: 498 LGIIKQELLSVK 509
              +K+    +K
Sbjct: 418 -NDLKELSKKLK 428


>gi|47419984|gb|AAT27344.1| DNA gyrase A [Campylobacter jejuni]
          Length = 246

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/272 (40%), Positives = 165/272 (60%), Gaps = 26/272 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V
Sbjct: 1   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTV 60

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +        
Sbjct: 61  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-------- 112

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 113 ------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLE 154

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 155 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 214

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           KRVP   Y  Q+RGGKG+  V   D+DF+   
Sbjct: 215 KRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF 246


>gi|297242251|gb|ADI24798.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG    
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHTF 181


>gi|297242223|gb|ADI24784.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242295|gb|ADI24820.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG    
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHTF 181


>gi|37998982|dbj|BAD00061.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 140

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|327179192|gb|AEA30139.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/150 (60%), Positives = 114/150 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           PN+LVNG  GIAVGMATNIP HNL EV+  
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHNLTEVIQR 150


>gi|167946605|ref|ZP_02533679.1| DNA gyrase, subunit A, type II topoisomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/132 (58%), Positives = 102/132 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K +  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK 
Sbjct: 3   EFAKEVLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFL 142
           TE R+ K     
Sbjct: 123 TEVRMAKIGPQH 134


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 191/512 (37%), Gaps = 70/512 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   ++ ++++++ D +    + +++     R+IP + DGLKP  R+++F   +  +
Sbjct: 632  FEPGTFLDQSMSNITVRDFVNKELILFSM-ADNIRSIPSVIDGLKPGQRKVIFSCFKRNL 690

Query: 66   EWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
               K  +K A++ G V     + HG A++   +  +A D+  S  + L+   G FGS   
Sbjct: 691  ---KTEIKVAQLVGYVSEHSAYHHGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLL 747

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L   +  +  +     ++ +   D    EP       P VLVNG  
Sbjct: 748  GGKDSASPRYIFTNLNPLSRLIFHEHDIPILESQIE-DNLVIEPTYYVPIIPMVLVNGTD 806

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +TNIP HN  +++     +++N +               P      G     NA
Sbjct: 807  GIGTGWSTNIPNHNPLDLIKNIKRLLNNQE----------PEEMIPYYRNYKGTITKINA 856

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
                 G  +  G       + ++++I V E+P  V   A  E + + + +  I    D  
Sbjct: 857  -----GKYISCGKV---FENINKKEINVVELPIGVWTQAYKEYLDQAIADNVIKSFKD-- 906

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
              S  +   ++I +     +        + T+  S  ++     NG   +    + ILK 
Sbjct: 907  -YSTDKTIDILIHMNNNEFSS-------KLTTSISTNNMVCFDRNGKIKKYHNTLEILKD 958

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R E   +R  Y L    D  + L      +  +     II   P  E    EL ++
Sbjct: 959  FYEVRLEFYNKRKIYRLKLLADELNKLKNKVRFIEGVITGSIIITQRPLNEII-LELERK 1017

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +   D                              +L+++++ LT    + +R E N+ 
Sbjct: 1018 EFTRYDNY--------------------------EYLLDMKISSLTKEKINKLREEYNNK 1051

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
             IE  E  +       +  +  ++L   + E 
Sbjct: 1052 NIEYNELKN-----KSIKNLWFEDLDKFEKEY 1078


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus BV-PW1]
          Length = 1101

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/485 (20%), Positives = 185/485 (38%), Gaps = 67/485 (13%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              + + D +    + ++ N    R+IP L DG KP  R+I +G    G+   K  VK A+
Sbjct: 650  RQIPVPDFINKDLIHFS-NDDTQRSIPSLVDGFKPSQRKIFYGANLRGL--EKDQVKVAQ 706

Query: 77   ISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            ++G V  +  + HG A++  A+  MAQ++  S  + L+E +G FGS  + G   A+ RY 
Sbjct: 707  LAGFVSDRVAYHHGEASLMGAIIGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYI 766

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              +L+K A  +        +++  N DG   EP       P +LVNG  GI  G +T+IP
Sbjct: 767  WTKLEKVAGLIFRKEDNPILNYI-NDDGLMVEPEFYLPIIPMILVNGATGIGTGFSTSIP 825

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             ++  E+++               L ++I+G  +           I   Y    G +   
Sbjct: 826  CYHPQELIEV--------------LKKLIKGEKYKK---------IHPYYHKFEGKLKKL 862

Query: 252  GVSHIEKTSG----DREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
              +  + +       +  IVV E+P   +  N    LEK+ +        D      +++
Sbjct: 863  DTTSYQVSGTYHIDKKNNIVVEELPVGEWTTNYKQFLEKMLD-------TDTNFTNYDNN 915

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                +++I LK       +  +L +     +L +++     G+  +   +  I+  F   
Sbjct: 916  STDEKILITLKFKNIPTKLDEKL-KMNKKINLTNLHAYTEKGHIQKFKNIDEIINNFYYV 974

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R E    R KYLL   + +  ++      +  +     II                    
Sbjct: 975  RLEGYYNRKKYLLEIYKHQMDIMKYKVKFIKEIINKTLIINNK----------------- 1017

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               K LI   D  +      G     E+    +L + L  LT    +++  +        
Sbjct: 1018 ---KKLIIEQDLETKKYPKMGKNLKDEINYDYLLGMNLYSLTKEKIEELEKQKIEKEEIY 1074

Query: 485  KECLD 489
                +
Sbjct: 1075 TNLKN 1079


>gi|297242297|gb|ADI24821.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/179 (50%), Positives = 126/179 (70%), Gaps = 2/179 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG   
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 180


>gi|297242219|gb|ADI24782.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/179 (50%), Positives = 126/179 (70%), Gaps = 2/179 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGS 247
           IP HN+ E+ D  V ++DNP   L+ ++EI++GPDFPT A I+  ++ I+  Y  GRG 
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179


>gi|37998992|dbj|BAD00066.1| DNA gyrase subunit A [Streptococcus porcinus]
          Length = 140

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|297242283|gb|ADI24814.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242287|gb|ADI24816.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G S D    AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG    
Sbjct: 122 PHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHSC 181


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 173/442 (39%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       K   +++  + +    + ++ +  + R+IP + DGLKP  R+++F   +   
Sbjct: 682  LPERYLYTKTTKAITYKEFINLELVLFSNSDNI-RSIPCMVDGLKPGQRKVMFTCFKRN- 739

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  + L+   G FG+   
Sbjct: 740  --DKREVKVAQLAGSVAEMSAYHHGEQSLCGTIVNLAQNYVGSNNINLLVPSGQFGTRLA 797

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    L      +   L    ++++ + D    EP+      P VLVNG  
Sbjct: 798  GGKDSASPRYIFTMLSPLTRLIFHPLDDPLLEYQYD-DNQKIEPLWYLPIIPMVLVNGTE 856

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T IP HN  +++     +++  +         I  P +      +   G +  
Sbjct: 857  GIGTGWSTKIPNHNPRDIISNLRRMLNGEEPK-------IMHPWYKNFRGEIESVGHQRY 909

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
               G  S++            D ++I ++E+P         E   E +    +K+   I+
Sbjct: 910  LTVGNVSLL------------DNQKIEISELPIGTWTQTYKENTLEPLANGSDKQKAIIS 957

Query: 298  DLRDESDRQGYRVVIELKRGAS-----ADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            + ++ +     R VI    G        +   +++++ TS  S  S+N      Y     
Sbjct: 958  EYKEYNTDTTVRFVISFLPGEYDRIYAEEGGFHRVFKLTSSISTSSMNAFDDKSYLKRYD 1017

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
                I   +   R E   +R  YL    +  A  L   A  +    +   ++      + 
Sbjct: 1018 HANDIFHEYYKLRIEYYGKRKAYLEGMLQAEADRLTDQARFIMEKCDRTLVVENKK-RKV 1076

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL++R + A  +K+    +
Sbjct: 1077 MIDELIKRGYRADPVKEWKRKV 1098


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/532 (18%), Positives = 190/532 (35%), Gaps = 70/532 (13%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             +  ++ +    + +++     R+IP L DGLKP  R++LF   +  ++   K V+    
Sbjct: 652  ELGYSEFIHKELIHFSM-ADNIRSIPSLMDGLKPGQRKVLFACFKRNLKQEIKVVQLGGY 710

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
              E    +H  G+ ++   +  MAQ++  S  + L+  +G FGS  + G   A+ RY   
Sbjct: 711  IAEHSAYHH--GDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYIST 768

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
             L K   ++  +     + ++ + DG   EP       P  LVNG  GI  G +T+I  +
Sbjct: 769  ALNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNY 827

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            N  E+V+     +D               P  P         GI      G G I     
Sbjct: 828  NPIELVNQIKNRLDGQ-------------PFQPMTPFYRNFDGIIENLPNGNGIIKG--- 871

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              I   +   + I + E+P +       E + + + E     I DLR+   +      I+
Sbjct: 872  --IIDCNEATDIITIRELPIKKWTRNYKEWLDKEMAE-EGSQIVDLREYHTKYKIHFEIQ 928

Query: 314  LKRGASADVILNQL--YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +  G  +D + N L  ++ ++  S  ++ +   N    +   +  I++ F   R +   +
Sbjct: 929  MVDGFVSD-LKNPLEYFKLSTPASCSNMVLFDSNNKIKKYECVSDIMEEFYQVRLQFYHK 987

Query: 372  RTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSP---------------------- 408
            R +YL++K  R+   +   L      + E ++I                           
Sbjct: 988  RKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKKIDLVKQLDKNGFTRFSQLIQVK 1047

Query: 409  --------NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                    + +  ++ +         + +  D             T  +   +   +L +
Sbjct: 1048 STKVKAFGDSQKQKKNVDDDESEDEQVSEDEDKQQKKQIQKKLQSTPSIDISEFNYLLSM 1107

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
             L  LT    + ++ ELN           + S  + +   I        D+ 
Sbjct: 1108 PLFSLTYEKVEKLQEELN---------QRVQSREALVNKEISLMWREDLDKF 1150


>gi|297242273|gb|ADI24809.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242291|gb|ADI24818.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG    
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHSC 181


>gi|297242241|gb|ADI24793.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242247|gb|ADI24796.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242279|gb|ADI24812.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG    
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHSC 181


>gi|37998986|dbj|BAD00063.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|37998988|dbj|BAD00064.1| DNA gyrase subunit A [Streptococcus canis]
          Length = 140

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|161511949|emb|CAP45394.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 151

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/145 (61%), Positives = 112/145 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATN 189
            V+  + PN+LVNG  GIAVGMAT 
Sbjct: 121 DVMPTKIPNLLVNGSSGIAVGMATK 145


>gi|262190159|ref|ZP_06048441.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
 gi|262033950|gb|EEY52408.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
          Length = 381

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 165/418 (39%), Gaps = 60/418 (14%)

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL IA  NLDEV+ IIR   +P+     LM R                          
Sbjct: 1   MQGLLIAYLNLDEVIEIIRNEDDPKAV---LMAR-------------------------- 31

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L+++Q  AIL+ +L  L  L    IR E + L  E K+  ++L S  RL  ++K+E+ 
Sbjct: 32  FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIK 91

Query: 507 SVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +  D+    RR+ +V  E    + + D +  E + V +S  G++        R  +    
Sbjct: 92  ADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI--------RHAKGHDV 143

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
               +  +  D         ++   +F  S G  Y  +   LP  S + +G+ +   L++
Sbjct: 144 DCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLP--SARGQGEPITGRLNV 201

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            +G  I  ++   ED+        +  +  G     K  D +  NRSGK  + L    E+
Sbjct: 202 AEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEV 255

Query: 685 LSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK---GDQVISMA 739
           ++ +       ++IL  T  G+ + FPI  +   +      +  I  AK    ++V+S  
Sbjct: 256 MTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNL 315

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +VL   A           + A +R +     ++ + + +    G +     Q +   E
Sbjct: 316 MVLPQGASI--------TLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQRVTAIE 365



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 208 RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 264

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 265 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 300


>gi|217069475|gb|ACJ83226.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 191

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 105/192 (54%), Positives = 142/192 (73%), Gaps = 1/192 (0%)

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +
Sbjct: 61  LNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKT 120

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE    +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIEL
Sbjct: 121 HIE-KRANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIEL 179

Query: 315 KRGASADVILNQ 326
           KR A ++++LN 
Sbjct: 180 KRDAMSEIVLNN 191


>gi|47420000|gb|AAT27352.1| DNA gyrase A [Campylobacter fetus]
          Length = 248

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/274 (37%), Positives = 162/274 (59%), Gaps = 26/274 (9%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT 
Sbjct: 1   KRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q+ AIL++RL++LTGL R+ +  EL  +   I++   IL S 
Sbjct: 107 ------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSE 154

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP  
Sbjct: 155 TLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSK 214

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            Y  Q+RGGKG+  V   D+DF+   F   +H +
Sbjct: 215 SYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 248


>gi|219815929|gb|ACL37051.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/138 (61%), Positives = 112/138 (81%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ 
Sbjct: 1   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 61  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 120

Query: 139 AHFLLDDLGKDTVDFRPN 156
           AH L+ DL K+TVDF  N
Sbjct: 121 AHELMADLEKETVDFVDN 138


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/485 (20%), Positives = 185/485 (38%), Gaps = 67/485 (13%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              + + D +    + ++ N    R+IP L DG KP  R+I +G    G+   K  VK A+
Sbjct: 1037 RQIPVPDFINKDLIHFS-NDDTQRSIPSLVDGFKPSQRKIFYGANLRGL--EKDQVKVAQ 1093

Query: 77   ISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYT 131
            ++G V  +  + HG A++  A+  MAQ++  S  + L+E +G FGS  + G   A+ RY 
Sbjct: 1094 LAGFVSDRVAYHHGEASLMGAIIGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYI 1153

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              +L+K A  +        +++  N DG   EP       P +LVNG  GI  G +T+IP
Sbjct: 1154 WTKLEKVAGLIFRKEDNPILNYI-NDDGLMVEPEFYLPIIPMILVNGATGIGTGFSTSIP 1212

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             ++  E+++               L ++I+G  +           I   Y    G +   
Sbjct: 1213 CYHPQELIEV--------------LKKLIKGEKYKK---------IHPYYHKFEGKLKKL 1249

Query: 252  GVSHIEKTSG----DREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
              +  + +       +  IVV E+P   +  N    LEK+ +        D      +++
Sbjct: 1250 DTTSYQVSGTYHIDKKNNIVVEELPVGEWTTNYKQFLEKMLD-------TDTNFTNYDNN 1302

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                +++I LK       +  +L +     +L +++     G+  +   +  I+  F   
Sbjct: 1303 STDEKILITLKFKNIPTKLDEKL-KMNKKINLTNLHAYTEKGHIQKFKNIDEIINNFYYV 1361

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R E    R KYLL   + +  ++      +  +     II                    
Sbjct: 1362 RLEGYYNRKKYLLEIYKHQMDIMKYKVKFIKEIINKTLIINNK----------------- 1404

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               K LI   D  +      G     E+    +L + L  LT    +++  +        
Sbjct: 1405 ---KKLIIEQDLETKKYPKMGKNLKDEINYDYLLGMNLYSLTKEKIEELEKQKIEKEEIY 1461

Query: 485  KECLD 489
                +
Sbjct: 1462 TNLKN 1466


>gi|37998990|dbj|BAD00065.1| DNA gyrase subunit A [Streptococcus iniae]
          Length = 140

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQENYDGSEREP 140


>gi|297242301|gb|ADI24823.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/178 (50%), Positives = 126/178 (70%), Gaps = 2/178 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 179


>gi|37651722|ref|NP_932596.1| gp52 [Aeromonas phage 44RR2.8t]
 gi|34733022|gb|AAQ81559.1| topoisomerase II medium subunit [Aeromonas phage 44RR2.8t]
          Length = 555

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 181/460 (39%), Gaps = 48/460 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + S+   + +  L +A+  +  RAIP L DGLKPV R  ++  ++   +   K+ K 
Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A ++G V    + HG  +   A   +A  W+  + ++EG GNFGS      AA RY  CR
Sbjct: 169 AALAGGVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFCR 228

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +  D+    V   P        P       P VL NG  GIA G ATNI  H+
Sbjct: 229 VHQNFWDIYRDIELAPVHPEP----EHLPPRYYLPVIPMVLANGVKGIATGYATNIFPHS 284

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              ++    A I+   I        ++ P+F                    G I      
Sbjct: 285 YKSLIKCTKAAIEGKPIPRLE----VQFPEF-------------------SGVIRRVSAK 321

Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE         + ++ +TE+P + ++ + +  + +L  + +IV   +      R    +
Sbjct: 322 TIEVEGLYELSGQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYKEQHKNGFRFDVTL 381

Query: 311 VIELKRG----ASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAF 364
             + K G     + +    ++ +   L+ + + N+  LN  G   E      +++ FV  
Sbjct: 382 KRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVIRDFVEH 441

Query: 365 REEVVVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           R +    R +Y   K+     +           +D+ + I          + EL++   +
Sbjct: 442 RRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDKITIKGKQ------KAELVKEIAS 495

Query: 424 ASDIKDLI-DLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
             D K    +L+  S Y +  D T  L   Q  AI + +L
Sbjct: 496 NPDFKGFENELVGMSIYRMTEDETYKL---QDEAIKQGKL 532


>gi|37998968|dbj|BAD00054.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998976|dbj|BAD00058.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998978|dbj|BAD00059.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998980|dbj|BAD00060.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998998|dbj|BAD00069.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|62084058|dbj|BAD91436.1| DNA gyrase A subunit [Streptococcus agalactiae]
          Length = 140

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|296253512|gb|ADH04217.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 109/143 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG++A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDSAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 105/514 (20%), Positives = 194/514 (37%), Gaps = 45/514 (8%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  ++  E  ++G+     ++ +   Y+ ++ +    R+IP L DG KP  R+ILF   +
Sbjct: 652  DTFLNYSEVSKEGVM---YSEFINREYILFSKS-DNERSIPHLLDGFKPSQRKILFACFK 707

Query: 63   MGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG- 118
              +   K  +K A+++G V     + HG A++   +  MAQ++  S  + L+   G FG 
Sbjct: 708  RKL---KGEIKVAQLTGYVAEHSAYHHGEASLQATIVNMAQNFCGSNNINLLTPSGQFGT 764

Query: 119  -SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
              + G   A+ RY   +L+     +      + + +  N DG   EP       P +LVN
Sbjct: 765  RRMGGKDAASARYIFTKLEPITRAIFHPDDDELLSYI-NDDGVTVEPEYYVPVIPMILVN 823

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTG 236
            G  GI  G +T++  +N  E+V                L   I G DF   A    G  G
Sbjct: 824  GADGIGTGWSTSVNNYNPREIVRN--------------LRRKIAGEDFVAMAPFYSGFKG 869

Query: 237  -IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKR 292
             I    +  R S     +  +E+   +   I+++E+P   +  +  A LE +     +K+
Sbjct: 870  EIIPVDSNSRRSGSYDMLGKVERI--NDTTIIISELPVRKWTQDYKAFLEIMLTGDGKKK 927

Query: 293  IVDIADLRDESDRQGYRVVI-----ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
            + +I D  +          I     ++         L   ++ T   S  ++ +    G 
Sbjct: 928  LPEIKDFTENHTETTVSFTIIAEKEKIDEFEKEKAGLMGKFKLTGSLSTSNMTLFDERGR 987

Query: 348  KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
                     I+ AF   R +   +R + L+ K ++    L   A  V  +  V  ++   
Sbjct: 988  ITRFEDPESIMNAFYDIRLDFYDKRKRLLVKKLKEEQRKLSNKARFVEEVCRVELVVNNR 1047

Query: 408  PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT---RAILELRLAR 464
               +    EL  R +             DS     S                +L +++  
Sbjct: 1048 K-RQDILHELRNRGYETFGADARSKETSDSDGEEDSINESQSDAELARGYEYLLGMKIWS 1106

Query: 465  LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            LT    +++R +L     E+       +S S L 
Sbjct: 1107 LTFEKAEELRRKLGEKTTELNALQG--TSPSELW 1138


>gi|37998994|dbj|BAD00067.1| DNA gyrase subunit A [Streptococcus equi subsp. equi]
 gi|37998996|dbj|BAD00068.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 140

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDG+ +EP
Sbjct: 121 DINKNTVDFQDNYDGNEREP 140


>gi|296253508|gb|ADH04215.1| GyrA [Gallibacterium anatis]
 gi|296253514|gb|ADH04218.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 108/143 (75%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|296253510|gb|ADH04216.1| GyrA [Gallibacterium anatis]
 gi|296253518|gb|ADH04220.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 109/143 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y+ L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYNTLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|219815937|gb|ACL37055.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/138 (60%), Positives = 111/138 (80%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+
Sbjct: 1   PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 60

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K
Sbjct: 61  VGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 120

Query: 138 AAHFLLDDLGKDTVDFRP 155
            AH L+ DL K+TVDF  
Sbjct: 121 IAHELMADLEKETVDFVD 138


>gi|260100984|gb|ACX31657.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 135

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 108/133 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGS 160
           K+TVDF  N+DG+
Sbjct: 121 KETVDFVDNHDGT 133


>gi|217069489|gb|ACJ83233.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 178

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/179 (56%), Positives = 135/179 (75%), Gaps = 1/179 (0%)

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF P YD    EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG + ++
Sbjct: 1   DKDTVDFVPXYDDXMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLL 60

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIE    +++ I
Sbjct: 61  DHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIE-KKSNKDII 119

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           V+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++++LN
Sbjct: 120 VIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIVLN 178


>gi|320540698|ref|ZP_08040319.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029239|gb|EFW11297.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 131

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/125 (62%), Positives = 102/125 (81%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKA 138
           R+ K 
Sbjct: 126 RMSKI 130


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 192/517 (37%), Gaps = 56/517 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                     +  I  + I++ +    + +++     R+IP + DG KP  R++L+G  + 
Sbjct: 712  QAFRPGTHLDPQIREIPISEFINKELILFSM-ADNVRSIPSILDGFKPGQRKVLYGCFKR 770

Query: 64   GVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV 120
             +      +K A++ G +     + HG  ++   +  +AQ++  +  L L++  G FGS 
Sbjct: 771  NLRSE---IKVAQLVGYISEHTGYHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSR 827

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   +A RY    +      + + L  D   +  + D    EP       P +LVNG
Sbjct: 828  AAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPEAYLPIIPMLLVNG 886

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI  G +TNIP+ N  ++V     +++  +                      G  G  
Sbjct: 887  AEGIGTGWSTNIPSFNPVDIVANIRRMMNGEEPVD-------------MTPWFKGWEGDL 933

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
               +  +  +       IE+   D + + +TEIP +    ++ E +   +   +   I D
Sbjct: 934  ERISPEKYKVSG----KIEQV--DDDTVEITEIPIKTWTNSVKEFLLAGLGNDK-PWIKD 986

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIG 356
            + ++       VV   K      + +  L R+  + S+   NMVA +  G   +  +   
Sbjct: 987  MEEQHGINIRFVVRLSKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSANE 1046

Query: 357  ILKAFVAFREEVVVRRT------------------KYLLNKARDRAHVLVGLAIAVANLD 398
            ILK +   R E+  RR                   +++      +  +       + +  
Sbjct: 1047 ILKDYYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRSEMVDDL 1106

Query: 399  EVVRIIRFSPNPETARRE-LMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-----YLSEV 452
            + ++  RF+ N +    E L++    A + ++    I   +  + +           +  
Sbjct: 1107 KKLKFTRFNKNGKPVHDEPLVEAEELAEEEEEAAGDISQLNLGLVAPEDESQYKPETTYS 1166

Query: 453  QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            Q   +L + +  LT    + +  + +    E+ E L 
Sbjct: 1167 QYDYLLGMAIWSLTRERYEKLLRQRDEKQEELNELLK 1203


>gi|261599193|gb|ACX85659.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 111/157 (70%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV    
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPLAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           N+D + +EP VL A +PN+LVNG  GI+ G AT  P 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATQFPP 160


>gi|37998970|dbj|BAD00055.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998972|dbj|BAD00056.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998974|dbj|BAD00057.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 140

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 114/140 (81%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L 
Sbjct: 61  YHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|297242239|gb|ADI24792.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242285|gb|ADI24815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/182 (49%), Positives = 126/182 (69%), Gaps = 2/182 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y   AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180

Query: 249 VI 250
             
Sbjct: 181 TF 182


>gi|77166862|gb|ABA62407.1| DNA gyrase subunit A [Neochlamydia hartmannellae]
          Length = 147

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 108/147 (73%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +EM++SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+ 
Sbjct: 1   EEEMKDSYLRYSMSVIISRALPDVRDGLKPSQRRILYAMRQLNLSPGAKHRKCAKISGDT 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G YHPHG   IY  L RMAQ+W +R  LI+GQGNFGS+DGDPPAA RY+E RL  A+  
Sbjct: 61  SGDYHPHGEMVIYPTLVRMAQNWVMRYSLIDGQGNFGSIDGDPPAAMRYSEARLTHASMQ 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           L+ DL K+TVD  PNYD + +EPVV  
Sbjct: 121 LMKDLDKETVDHVPNYDETKKEPVVFP 147


>gi|116048067|gb|ABJ53249.1| GyrA [Pseudomonas andersonii]
          Length = 139

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 88/139 (63%), Positives = 110/139 (79%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR 
Sbjct: 1   LKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ 
Sbjct: 61  LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMA 187
            + PN+L+NG  GIAVGMA
Sbjct: 121 TKVPNLLINGSSGIAVGMA 139


>gi|37998984|dbj|BAD00062.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 140

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|217069469|gb|ACJ83223.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 183

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/182 (56%), Positives = 138/182 (75%), Gaps = 1/182 (0%)

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG +
Sbjct: 3   RDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 62

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE    ++
Sbjct: 63  YLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE-KRANK 121

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++++
Sbjct: 122 DIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSEIV 181

Query: 324 LN 325
           LN
Sbjct: 182 LN 183


>gi|33338048|gb|AAQ13646.1|AF173979_1 DNA gyrase [Pasteurella multocida]
          Length = 141

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 91/141 (64%), Positives = 109/141 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVGMA 187
           L  + P +LVNG  GIAVGMA
Sbjct: 121 LPTKVPALLVNGSSGIAVGMA 141


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 169/442 (38%), Gaps = 38/442 (8%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +       K   ++S  + +    + ++ +  + R+IP + DGLKP  R+++F   +   
Sbjct: 697  LPERYLYTKTTRAISYKEFINLELVLFSNSDNV-RSIPCVLDGLKPGQRKVMFTCFKRN- 754

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              +K+ VK A+++G V     + HG  ++   +  +AQ++  S  + L+   G FG+   
Sbjct: 755  --DKREVKVAQLAGSVAEMSAYHHGEQSLCSTIVNLAQNFVGSNNINLLYPGGQFGTRLA 812

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    +      +   L    ++++ + D    EP+      P VLVNG  
Sbjct: 813  GGKDSASPRYIFTMMSALTRLIFHPLDDPLLEYQYD-DNQKIEPLWYLPIIPMVLVNGSE 871

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T IP HN  +++     +++  +         +  P +      +   G +  
Sbjct: 872  GIGTGWSTKIPLHNPRDIIANLRRMLNGEEPK-------VLHPWYKNFRGSVEVVGPQKY 924

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIA 297
               G  S++      I            +E+P         E   E +    EK+   I+
Sbjct: 925  LTVGNLSLLENQKIEI------------SELPIGTWTQVYKENTLEPLLHGSEKQKAVIS 972

Query: 298  DLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            D ++ +     R V+    G      + D   +++++ TS  S   ++      Y     
Sbjct: 973  DYKEYNTDTTVRFVVSFLPGEFDKLYAEDGGFHRVFKLTSSISTTCMHAFDDKNYLRRYE 1032

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
                I + +   R +   +R  YL    +  A  L   A  +    +   ++      + 
Sbjct: 1033 HANDIFQEYYKIRLDFYHKRKAYLEGMLQAEADRLTDQARFIMEKCDRTLVVENKK-RKV 1091

Query: 413  ARRELMQRSWNASDIKDLIDLI 434
               EL++R +    +K+    +
Sbjct: 1092 MIDELIKRGYRPDPVKEWKRKV 1113


>gi|304373560|ref|YP_003858305.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
 gi|299829516|gb|ADJ55309.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
          Length = 428

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/492 (23%), Positives = 188/492 (38%), Gaps = 65/492 (13%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             SI D +Q   LT+A+  I  RAIP L DG KPVHR  +        +    + K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHS----AAKGGTGFQKVASI 57

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  ++ +AL+ MA  W   + L E  G FGS     P A RY +C+L  
Sbjct: 58  AGGVAMYGYHHGETSVEEALSLMAAHWCNNIPLFERDGFFGSRLVKKPGAPRYIKCKLSP 117

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               +  D         P+ D     P       P VLVNG  GIA   ATNIP H+   
Sbjct: 118 LFKAIYMDEDLTL----PHEDPEHVPPAYYLPIIPMVLVNGFSGIAKAYATNIPPHDPVS 173

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V++GCV+ ++  D  LD     ++ P F                       +  G  + +
Sbjct: 174 VLNGCVSYLNGKDFTLD-----LKYPHFK--------------------GDIENGTMYGK 208

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                + ++V+TEIP + ++   +  + +L  +  IV   DL  E  R    +  E   G
Sbjct: 209 YELQGKTKLVITEIPVKYDRVKYISILDKLEEKGYIVSYKDLSKEDFRYEITLKREYANG 268

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            + + IL     +  +++      V  NG          +LK FV  R  V  +R     
Sbjct: 269 LTREKILKD---FGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRIGVYQQR----- 320

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                              +D+ ++  + + +   A+ + + +     D    +      
Sbjct: 321 -------------------IDKRIQETKEALDKALAKVDFIDQMIAQPDALKGLSR---- 357

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           S  +    T    E     ++ + +  LT   R  + +E N L  ++K   +       L
Sbjct: 358 SEAVKLVSTWAGCENHAEILVAMNIYHLTTDERQKLEDEANELRKQLKYWEETTPKTEYL 417

Query: 498 LGIIKQELLSVK 509
              +K+    +K
Sbjct: 418 -NDLKELSKKLK 428


>gi|296253506|gb|ADH04214.1| GyrA [Gallibacterium anatis]
 gi|296253516|gb|ADH04219.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 108/143 (75%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDYAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATNI 190
             + P +LVNG  GIAVGMAT +
Sbjct: 121 PTKVPALLVNGSSGIAVGMATKL 143


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 96/559 (17%), Positives = 197/559 (35%), Gaps = 62/559 (11%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +       +  +T + I+D +    + +++     R+IP + DGLKP  R++++   + 
Sbjct: 659  KLYEPGTVLDPKLTEIPISDFINKELILFSL-ADNIRSIPSVLDGLKPGQRKVIYACFKR 717

Query: 64   GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV- 120
             ++   K  +      E  G +H  G  ++Y  +  +AQD+  S  + L++  G FG+  
Sbjct: 718  NLKSEIKVAQLGGYVSEHTGYHH--GEQSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRA 775

Query: 121  -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   AA RY    L K    + + L    +++  + D    EP       P VLVNG 
Sbjct: 776  TGGKDSAAPRYIFTELNKLTRKIFNTLDDPLLNYIQD-DEQTVEPEWYLPVIPMVLVNGT 834

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +TNIP  N  ++V+    ++   +++                    G  G   
Sbjct: 835  EGIGTGWSTNIPPFNPMDIVNNVKRLMKGEEMEQ-------------MAPWYRGWQGSLE 881

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIA 297
                       R    IE+   D   + +TE+P +   + + E +   +   +K    I 
Sbjct: 882  KIDP----QKYRTYGRIEQI--DENTLEITELPPKTWTSVIKEHLLLGLSGNDKVKPWIK 935

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLI 355
            D++++       ++            +    R+  + ++   NMVA +  G   +   + 
Sbjct: 936  DIQEQHGATIKFIITLTSDEMEKTRKIGFYERFKLVSTVSLSNMVAFDPQGKIKKYDDVR 995

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP----- 410
             IL  F   R     +R  Y+  + +     L      +  + E    +   P P     
Sbjct: 996  DILSDFYYTRLTYYQKRKDYIGERLKWEVEKLSYQVKFIMMIVEKKLSVSNKPRPVLFEE 1055

Query: 411  ---------------------ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
                                 E A+ E +    +  D ++  +  D++  +         
Sbjct: 1056 LMSLGFPRINKEGKPTYGKVEEQAQIEALNDEDDDDDDEEKSEAEDNAEESEDVVNGPEE 1115

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS---RSRLLGIIKQELL 506
                   +L +++  LT    + +  ++     E++  L + +       L   ++    
Sbjct: 1116 KFGNYDYLLGMKIWALTKERYEKLMKQMQEKQTELERLLKLSAKDLWEIDLDDFVEHYEK 1175

Query: 507  SVKDELDTPRRTRIVEGLL 525
             +  + D   R  IV    
Sbjct: 1176 FI--QYDEEVRNSIVPDAA 1192


>gi|297242303|gb|ADI24824.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y K  R  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKKSGRTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180


>gi|297242217|gb|ADI24781.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/180 (50%), Positives = 126/180 (70%), Gaps = 2/180 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAER 129
           Y   AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA R
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG  
Sbjct: 121 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 180


>gi|33338054|gb|AAQ13649.1|AF173982_1 DNA gyrase [Pasteurella multocida]
          Length = 139

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 88/139 (63%), Positives = 106/139 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG++A+Y  L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYGTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVG 185
           L  + P +LVNG  GIAVG
Sbjct: 121 LPTKVPALLVNGSSGIAVG 139


>gi|297242275|gb|ADI24810.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/180 (49%), Positives = 125/180 (69%), Gaps = 2/180 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+ +GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSARTVGDGLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG    
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHSC 181


>gi|46019110|emb|CAE52019.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 159

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 97/158 (61%), Positives = 126/158 (79%)

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +
Sbjct: 2   RDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVL 61

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +
Sbjct: 62  AVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGK 121

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRD
Sbjct: 122 ERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRD 159


>gi|239737043|gb|ACS13101.1| ParC [Pseudomonas putida]
          Length = 142

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 111/142 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M ++G + NK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMSELGNDCNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             R PN+LVNG  GIAVGMATN
Sbjct: 121 PTRIPNLLVNGSSGIAVGMATN 142


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 194/549 (35%), Gaps = 57/549 (10%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +  ++ + I D +    + +++     R+IP + DG KP  R++L+   +  + 
Sbjct: 655  EPGNTLDPTLSEIPICDFINKELILFSL-ADNVRSIPSVLDGFKPGQRKVLYSCFKRKL- 712

Query: 67   WNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
              K  +K A++ G V     + HG  ++   +  MAQD+  S  + L++  G FG+    
Sbjct: 713  --KSEIKVAQLIGYVSEHTSYHHGEQSLAQTIVGMAQDYVGSNNIYLLKPNGAFGTRAAG 770

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   AA RY    L      + + L    + +    D    EP       P +LVNG  G
Sbjct: 771  GKDSAAPRYIFTELNNITPNIFNPLDNPLLTYLQE-DDQTIEPQWYLPVIPMILVNGAEG 829

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNA 240
            I  G +TNIP  N  E+V     +++   +D  A          P      GR   I   
Sbjct: 830  IGTGWSTNIPCFNPLEIVQNIKKLMNGEPMDDMA----------PFYRGWEGRLQKIDGQ 879

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIAD 298
                 G I   G   +E          +TE+P +   + + E +   +   EK    I D
Sbjct: 880  RYRMYGRIEQVGPRTLE----------ITELPAKTWISTIKEHLLLGLAGNEKTKPWIKD 929

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLI 355
            +  E+     +  +EL      +      Y   +  S  SL ++     NG   +   + 
Sbjct: 930  M-QENHGATIKFTVELTDEEMQNTRRIGFYERFKLVSTISLANMVAFDPNGRIKKYEDVR 988

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP------- 408
             IL  F   R E   +R  ++  + + +   L      +  + E    +   P       
Sbjct: 989  DILSDFYYVRLEYFQKRKDHMSERLQWQVEKLSQQTRFIKLIVEKKLTVTNKPRSALFRE 1048

Query: 409  -----NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ-----TRAIL 458
                  P+              + + ++D           + +  ++  Q        +L
Sbjct: 1049 LEELGFPKINSEGRPYYGAVKGEEQSVLDAAYSDDNEDPEEESNEVNGPQDKYGTFEYLL 1108

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD--ELDTPR 516
             +++  LT    + + N+     +E+   L  LS++      +     + K   E D  +
Sbjct: 1109 GMKIWSLTKEKYEKLLNQKQEKEVELDNLLR-LSAKDLWCQDLDAFSNAYKAFLEYDEKK 1167

Query: 517  RTRIVEGLL 525
            R  I+    
Sbjct: 1168 RNSIIPDAA 1176


>gi|47420008|gb|AAT27356.1| DNA gyrase A [Campylobacter lari]
          Length = 237

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 108/263 (41%), Positives = 160/263 (60%), Gaps = 26/263 (9%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT Y
Sbjct: 1   RDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLNLFLNHRKTVIIRRTIY 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+    IL S +
Sbjct: 106 -----------FGLSELQSNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK EL  ++ + D PR T+I E   D++ ED I  E+MVVT++H GY+K VP   
Sbjct: 155 LLENLIKDELKEIRTKFDVPRITQIEEDYDDIDIEDLIPNENMVVTINHRGYIKXVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVT 578
           Y  Q+RGGKG+  V   D+DF+ 
Sbjct: 215 YEKQKRGGKGKVAVTTYDDDFIE 237


>gi|194360505|gb|ACF57900.1| DNA gyrase A subunit [Actinomyces meyeri]
          Length = 188

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 102/188 (54%), Positives = 131/188 (69%), Gaps = 6/188 (3%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDF+ NYDG  +EP +L AR+PN+L NG  GIAVGMAT IP HNL EV  G    + +
Sbjct: 2   ECVDFQDNYDGRNKEPTILPARFPNLLANGSEGIAVGMATRIPPHNLREVARGVEWALAH 61

Query: 209 PDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           P+   + L+E    II GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+
Sbjct: 62  PEATREELLEALLTIIPGPDFPTGATILGRKGIEDAYRTGRGSITQRAVVNVEEIQ-GRQ 120

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVI 323
            +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE+  R G R+VI LKR A A V+
Sbjct: 121 CLVVTELPYQVNPDNLADKIAQLVRDGQISGIADIRDETSGRTGQRLVIVLKRDAVAKVV 180

Query: 324 LNQLYRYT 331
           LN LY+ T
Sbjct: 181 LNNLYKRT 188


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 184/514 (35%), Gaps = 64/514 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP++ DG KP  R++L+G  +  ++   K  
Sbjct: 665  DPTLKEIPISDFINKELILFSL-ADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVA 723

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
            + A    E    +H  G  ++   +  +AQ++  S  + L+   G FG+    G   AA 
Sbjct: 724  QLAPYVSECTAYHH--GEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAA 781

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K    +          +    D    EP       P +LVNG  GI  G +T
Sbjct: 782  RYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGRST 840

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R  +
Sbjct: 841  YIPPFNPLEIIKNIRHLMNDEELEQ-------------MHPWFRGWTGTIEEIEPLRYRM 887

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 888  YGR----IEQI--GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDN 941

Query: 307  GYRVVIELKRGASADVILNQLY---RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              + +I L     A       Y   +  S  SL ++     +G   +  ++  IL  F  
Sbjct: 942  -IKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 1000

Query: 364  FREEVVVRRTKYLLNKAR---------------------------DRAHVLVGLAIAVAN 396
             R E   +R  ++  + +                             A +     +    
Sbjct: 1001 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1060

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             ++  +    SPN E A  ++       SD +D     +D+   I     +Y +      
Sbjct: 1061 FNKEGKPYYGSPNDEIA-EQINDVKGATSDEEDEESSHEDTENVINGPEELYGTY---EY 1116

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +L +R+  LT      +  +      E++  L +
Sbjct: 1117 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKL 1150


>gi|261599201|gb|ACX85663.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 85/153 (55%), Positives = 111/153 (72%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 7   RALPDIRDGLKPVQRRILYSMNKYGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 66

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D 
Sbjct: 67  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDD 126

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           + +EP VL A +PN+LVNG  GI+ G AT IP 
Sbjct: 127 TEKEPTVLPAAFPNLLVNGATGISAGYATAIPP 159


>gi|193735142|gb|ACF20080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++ +Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSPVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|255030685|ref|ZP_05302636.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 278

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 146/306 (47%), Gaps = 34/306 (11%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           MVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R H+L GL  A++ LDEV
Sbjct: 1   MVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +++IR S +   A+  L  +                             SE Q  AI+ L
Sbjct: 61  IKLIRGSKDKRDAKLNLQTK--------------------------YDFSEKQAEAIVSL 94

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RLT     ++++E  SL  +I     IL   + L+ ++K+EL  +K +  T RRT +
Sbjct: 95  QLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEV 154

Query: 521 VEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              + +  ++ E  +  ED++V+V+  GYVKR     Y A          + M++ D   
Sbjct: 155 QAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAI 209

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFP 637
            +  +++  S+L F+S G      V  LP    +  G  + ++ S L+ GE I + +   
Sbjct: 210 FIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQ 269

Query: 638 EDESSW 643
                 
Sbjct: 270 AFTEEK 275


>gi|28916606|gb|AAO59536.1| gyrase A [Bacillus mojavensis]
          Length = 197

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 115/196 (58%), Positives = 153/196 (78%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++  Y+G  +EPVV+ +R+PN+LVNG  GIA GMATNIP H LGE++DG +A  +N
Sbjct: 2   DTIDYQDTYEGPEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEIIDGVLAGGEN 61

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            DI +  +M  I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 62  KDITIPEVMAFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILV 121

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY
Sbjct: 122 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNHLY 181

Query: 329 RYTSLQSLFSVNMVAL 344
           + T+LQ+ F +NM+AL
Sbjct: 182 KQTALQTSFGINMLAL 197


>gi|260100986|gb|ACX31658.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 131

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 82/131 (62%), Positives = 106/131 (80%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDG 159
           +TVDF  N+DG
Sbjct: 121 ETVDFVDNHDG 131


>gi|260100991|gb|ACX31660.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 82/131 (62%), Positives = 107/131 (81%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDG 159
           +TVDF  N+DG
Sbjct: 121 ETVDFVDNHDG 131


>gi|219815935|gb|ACL37054.1| GyrA [Salmonella enterica]
          Length = 136

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 84/136 (61%), Positives = 110/136 (80%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 141 FLLDDLGKDTVDFRPN 156
            L+ DL K+TVDF  N
Sbjct: 121 ELMADLEKETVDFVDN 136


>gi|254729442|gb|ACT79805.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 132

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 104/127 (81%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAH 140
           RL K AH
Sbjct: 126 RLAKIAH 132


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 189/481 (39%), Gaps = 45/481 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           + ++ +    L Y+  + L R++P++ DG KP  R++LF M         +  + A    
Sbjct: 182 TFSEFVNKELLEYS-QLDLRRSLPNIVDGYKPSQRKVLFTMFGRYERDEVRVSQLAGAVS 240

Query: 80  EVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +H  G  ++ + + R+AQD+    +L LLL  GQ       G+  A+ RY    L
Sbjct: 241 QYCGYHH--GEESLVNTIIRLAQDFVGSNNLNLLLPLGQFGTRLAGGEDAASARYIYTSL 298

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +        + +    + +F EP   C   P +L+NG  GI  G AT I     
Sbjct: 299 SPLARIIFPRADDKVLKYLME-ENTFIEPEWYCPIIPMILINGAEGIGTGWATKILPRCP 357

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            +++     +     ID   L +++       G +      I     +  G I    +  
Sbjct: 358 RQIISNAQRL-----IDGRPLQDMLPHFRKFQGTI----NEITPRQYSISGKISYHRL-- 406

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------DLRDESDRQGYR 309
                    + ++TE+P  +      EK+ + + +  ++         +L  ES+     
Sbjct: 407 -----RSGLRAIITELPTGIWNNKYKEKVLDSIMKSGLISYFICSSYEELHSESNVHFIL 461

Query: 310 VVIELKRGASADVI--LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            VI+    +    I  LN+L +  S+ S  S+ +        +  + + I + F   R +
Sbjct: 462 HVIDKPLISDKKQIKTLNRLLKLRSVASENSMILFDEKNVLRKYNSTVDIFQEFFEVRRQ 521

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             V R +Y L KA D+    +G  +   N      II    N      +++++ ++++ +
Sbjct: 522 KYVERREYEL-KAMDKKLKFIGNQVRFVNAVINGEIIIEKKNRVEIVTQIIEKGFDSNPM 580

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K + + +D++  +                +L++ L RL+      ++ + + L    K  
Sbjct: 581 K-MKNTVDENRNSPDFA-----------YLLDMPLCRLSNEEILILQEKRSELWERFKAL 628

Query: 488 L 488
            
Sbjct: 629 K 629


>gi|11967832|emb|CAC19422.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 136

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 80/131 (61%), Positives = 107/131 (81%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLD 144
           RL K AH L+ 
Sbjct: 126 RLAKIAHELMA 136


>gi|47420002|gb|AAT27353.1| DNA gyrase A [Campylobacter fetus]
          Length = 239

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 100/265 (37%), Positives = 155/265 (58%), Gaps = 26/265 (9%)

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT + L KAR RA
Sbjct: 1   NNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQKARARA 60

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+D V+ +I+ S +  +AR  LM +                        
Sbjct: 61  HILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK------------------------ 96

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE+Q+ AIL++RL++LTGL R+ +  EL  +   I++   IL S + +  II+ E
Sbjct: 97  --FGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDE 154

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           LL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGK
Sbjct: 155 LLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGK 214

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSV 589
           G+  V   D+DF+   F   +H ++
Sbjct: 215 GKVAVTTYDDDFIESFFTCMSHDTL 239



 Score = 37.6 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +RR          R+  +    + LD+ D ++++   + + +   + + G   +F +S +
Sbjct: 46  IRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTN---SARDGLMAKFGLSEL 102

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +       + +R   L   ++    A +       ++    +K  +    +I  +  EI 
Sbjct: 103 Q---SNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIK 159

Query: 774 SLKN---DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           S       + +  +  +   ++L   E  ++T++ +G+ KR  S  +    R GKG  A 
Sbjct: 160 SKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAV 219

Query: 831 DVSKIN 836
                +
Sbjct: 220 TTYDDD 225


>gi|33338052|gb|AAQ13648.1|AF173981_1 DNA gyrase [Pasteurella multocida]
          Length = 143

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/143 (64%), Positives = 109/143 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG+ A+YD L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDIAVYDTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATN 189
           L  + P +LVNG  GIAVGMAT 
Sbjct: 121 LPTKVPALLVNGSSGIAVGMATK 143


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 100/512 (19%), Positives = 195/512 (38%), Gaps = 59/512 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  ++  D +    + Y+    L R+IP L DGLKP  R+ILF   +  +    K  
Sbjct: 782  DHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVS 840

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + +    E    +H  G  ++   + +MA ++  S  L L+   G FG+    G   A+ 
Sbjct: 841  QLSGYVAEQTSYHH--GEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASA 898

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L+  A +L ++L    +++    +G   +P       P +LVNG  GI VGM+T
Sbjct: 899  RYIFTKLEPVARYLFNELDDPLLNYL-EEEGESIQPDYYIPIIPMLLVNGSEGIGVGMST 957

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP  +  +++D  +  ++N       L ++I            G  G  +     R + 
Sbjct: 958  SIPLFSPIDIIDQLMLRLNNQVA----LKKLIP--------WYRGFKGTIS---PDRHTY 1002

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
               GV            + +TE+P     +   E + +L+ +  I    +   E+     
Sbjct: 1003 RTNGV-----IKLVGRNLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQESNTENSVHFT 1057

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFRE 366
             ++   +     D+  N+L +   L +  + ++   +      +  ++  I+  F   R 
Sbjct: 1058 ILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRL 1117

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   +R +YLL            L   +  L   ++ +        A  +L  +  +  D
Sbjct: 1118 QFYGKRREYLLK----------SLDNQIKRLTTTIQFLE-----VIASGKLKIQGRSKQD 1162

Query: 427  IKDLIDLIDDSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            +   ++  +   +   G+        + + +IL++   R        I N  N L     
Sbjct: 1163 LIKELESGEIVGFENFGTHPPEVYQHLFSLSILDITKER--------IDNLTNQLTKRKS 1214

Query: 486  ECLDILSSRSR-----LLGIIKQELLSVKDEL 512
            E   I SS  +      L  +K+ L     E 
Sbjct: 1215 EHQSISSSDPKSLWTADLQQLKEYLEKSDKEF 1246


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/599 (16%), Positives = 211/599 (35%), Gaps = 83/599 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  ++ +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 736  DHRLEEIPYSEFINKELILFSM-ADNVRSIPSIADGLKPGQRKVIWGCFKRKL---KKEI 791

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A++ G +     + HG A++   +  +AQD+  S  L L+   G +G+  + G   AA
Sbjct: 792  KVAQLVGYISEHAAYHHGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAA 851

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY     +     +        +++  + D   +    +    P VL+NG  GI  G +
Sbjct: 852  PRYIFTNAKSITRAIYHPFDDPLLNYLKDDDVPIEPEWYMPT-VPMVLINGAEGIGTGWS 910

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP +N  ++V     ++   + +             P      G  G      TG+G 
Sbjct: 911  TNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKG--EVRPTGKGK 955

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE----------------- 290
              + GV+    T  +   + ++E+P         +++  ++                   
Sbjct: 956  YDVVGVA----TKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKK 1011

Query: 291  ---KRIVDIADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVAL 344
               K    + D ++  D       + +         +  L + +  T+  S  ++ +   
Sbjct: 1012 DVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMILFDF 1071

Query: 345  NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             G   +  T   ILK F   R     +R  Y   +A + +     L   +  ++ +++  
Sbjct: 1072 EGKIKKYETPEEILKDFYPMRLAYYQKRKDY---QALELSTAYDKLNNQIRFIEMIIKKE 1128

Query: 405  RFSPNPETA--RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAIL 458
                N + A    EL + ++                    S+     S  +       +L
Sbjct: 1129 LVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLL 1188

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
             + +  LT    + ++ + +    E+   L+   S + L            D+       
Sbjct: 1189 GMAIYSLTRERIEKLKQQAHEKEQELLALLE--KSPTDLWNT-------DLDKF------ 1233

Query: 519  RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
             + E   D    +    E   V        K+      + ++  G GR G    D+DFV
Sbjct: 1234 -LEEWEKDCMIFEQKKGEGGAV------NGKKRKQRTLKTRKSIGMGRRGKDSDDDDFV 1285


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/599 (16%), Positives = 211/599 (35%), Gaps = 83/599 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  ++ +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 751  DHRLEEIPYSEFINKELILFSM-ADNVRSIPSIADGLKPGQRKVIWGCFKRKL---KKEI 806

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A++ G +     + HG A++   +  +AQD+  S  L L+   G +G+  + G   AA
Sbjct: 807  KVAQLVGYISEHAAYHHGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAA 866

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY     +     +        +++  + D   +    +    P VL+NG  GI  G +
Sbjct: 867  PRYIFTNAKSITRAIYHPFDDPLLNYLKDDDVPIEPEWYMPT-VPMVLINGAEGIGTGWS 925

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP +N  ++V     ++   + +             P      G  G      TG+G 
Sbjct: 926  TNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKG--EVRPTGKGK 970

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE----------------- 290
              + GV+    T  +   + ++E+P         +++  ++                   
Sbjct: 971  YDVVGVA----TKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKK 1026

Query: 291  ---KRIVDIADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVAL 344
               K    + D ++  D       + +         +  L + +  T+  S  ++ +   
Sbjct: 1027 DVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMILFDF 1086

Query: 345  NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             G   +  T   ILK F   R     +R  Y   +A + +     L   +  ++ +++  
Sbjct: 1087 EGKIKKYETPEEILKDFYPMRLAYYQKRKDY---QALELSTAYDKLNNQIRFIEMIIKKE 1143

Query: 405  RFSPNPETA--RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAIL 458
                N + A    EL + ++                    S+     S  +       +L
Sbjct: 1144 LVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLL 1203

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
             + +  LT    + ++ + +    E+   L+   S + L            D+       
Sbjct: 1204 GMAIYSLTRERIEKLKQQAHEKEQELLALLE--KSPTDLWNT-------DLDKF------ 1248

Query: 519  RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
             + E   D    +    E   V        K+      + ++  G GR G    D+DFV
Sbjct: 1249 -LEEWEKDCMIFEQKKGEGGAV------NGKKRKQRTLKTRKSIGMGRRGKDSDDDDFV 1300


>gi|260100989|gb|ACX31659.1| DNA gyrase subunit A [Salmonella enterica]
          Length = 132

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDG 159
           K+TVDF  N+DG
Sbjct: 121 KETVDFVDNHDG 132


>gi|330721079|gb|EGG99218.1| DNA gyrase subunit A [gamma proteobacterium IMCC2047]
          Length = 225

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 112/245 (45%), Gaps = 56/245 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A   G V++  L +F +   SG IA+ LD  D +++V       DI+L +  G+C RF 
Sbjct: 1   MAMASGTVKKTSLMNFARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFA 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R    R + GVRGI L +G+++IS+                               
Sbjct: 61  EEDVRPMG-RTARGVRGIRLKEGERLISLI------------------------------ 89

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                  +  +   +L+VSE G+GKRT   DF   NR G+G+ A
Sbjct: 90  -----------------------IPQEGGRVLSVSENGYGKRTEMTDFPSHNRGGQGVIA 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S+ N  G LV   PV D D+I+L+SDKGTL+R   + I I SR T+GV +   +K E
Sbjct: 127 MQTSERN--GELVGAVPVYDGDEIMLISDKGTLVRTRTDGISIVSRNTQGVSLIKVSKGE 184

Query: 890 RVVSV 894
           R+V V
Sbjct: 185 RLVGV 189



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 15/232 (6%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VK+  L  +   R    G   V +  +D + ++ +      ++ FS+ G   +     
Sbjct: 6   GTVKKTSLMNFARPRSS--GLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFAEED 63

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +      ARG   +  + L +GER+ +++             V+  +++G  +R +++DF
Sbjct: 64  VRPMGRTARG---VRGIRLKEGERLISLII------PQEGGRVLSVSENGYGKRTEMTDF 114

Query: 666 IQINRSG--KIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              NR G   IAM+      E++        ++I+L +  G  VR   +       RN+ 
Sbjct: 115 PSHNRGGQGVIAMQTSERNGELVGAVPVYDGDEIMLISDKGTLVRTR-TDGISIVSRNTQ 173

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           GV  I ++KG++++ +  +   + D    +       A     +G   E  S
Sbjct: 174 GVSLIKVSKGERLVGVERIEEPEEDEFAHLDEAGEAVAGVEADAGSDSEQES 225



 Score = 41.4 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF-VTDLFIVSTHTSVLFFSSLGF 597
           V++VS  GY KR  ++ + +  RGG+G   +   + +  +     V     ++  S  G 
Sbjct: 97  VLSVSENGYGKRTEMTDFPSHNRGGQGVIAMQTSERNGELVGAVPVYDGDEIMLISDKGT 156

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           + + +   + I S   +G   ++++ +++GER+  +
Sbjct: 157 LVRTRTDGISIVSRNTQG---VSLIKVSKGERLVGV 189


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/599 (16%), Positives = 211/599 (35%), Gaps = 83/599 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  ++ +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 751  DHRLEEIPYSEFINKELILFSM-ADNVRSIPSIADGLKPGQRKVIWGCFKRKL---KKEI 806

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
            K A++ G +     + HG A++   +  +AQD+  S  L L+   G +G+  + G   AA
Sbjct: 807  KVAQLVGYISEHAAYHHGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAA 866

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY     +     +        +++  + D   +    +    P VL+NG  GI  G +
Sbjct: 867  PRYIFTNAKSITRAIYHPFDDPLLNYLKDDDVPIEPEWYMPT-VPMVLINGAEGIGTGWS 925

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            TNIP +N  ++V     ++   + +             P      G  G      TG+G 
Sbjct: 926  TNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKG--EVRPTGKGK 970

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE----------------- 290
              + GV+    T  +   + ++E+P         +++  ++                   
Sbjct: 971  YDVVGVA----TKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKK 1026

Query: 291  ---KRIVDIADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVAL 344
               K    + D ++  D       + +         +  L + +  T+  S  ++ +   
Sbjct: 1027 DVVKNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMILFDF 1086

Query: 345  NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             G   +  T   ILK F   R     +R  Y   +A + +     L   +  ++ +++  
Sbjct: 1087 EGKIKKYETPEEILKDFYPMRLAYYQKRKDY---QALELSTAYDKLNNQIRFIEMIIKKE 1143

Query: 405  RFSPNPETA--RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAIL 458
                N + A    EL + ++                    S+     S  +       +L
Sbjct: 1144 LVVSNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLL 1203

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
             + +  LT    + ++ + +    E+   L+   S + L            D+       
Sbjct: 1204 GMAIYSLTRERIEKLKQQAHEKEQELLALLE--KSPTDLWNT-------DLDKF------ 1248

Query: 519  RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
             + E   D    +    E   V        K+      + ++  G GR G    D+DFV
Sbjct: 1249 -LEEWEKDCMIFEQKKGEGGAV------NGKKRKQRTLKTRKSIGMGRRGKDSDDDDFV 1300


>gi|9632656|ref|NP_049875.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|1351263|sp|P07065|TOP5_BPT4 RecName: Full=DNA topoisomerase medium subunit; AltName:
           Full=Protein Gp52
 gi|5354280|gb|AAD42487.1|AF158101_74 gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|728620|emb|CAA27959.1| 52-protein [Enterobacteria phage T4]
 gi|299780622|gb|ADJ39984.1| DNA topoisomerase II medium subunit [Enterobacteria phage T4T]
          Length = 442

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 166/422 (39%), Gaps = 34/422 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + +  D     V    + D     P       P VL+NG  GIA G AT I  H++  
Sbjct: 125 NFYNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  +    +        +  P+F    V I G+  I+  Y               
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------------- 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                 R Q+ +TEIPY+ ++   + KI + +  K  +   D   E       +   E  
Sbjct: 224 ----TSRTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +    ++ +   L    S N+  +N  G       ++ ++K FV  R+  V +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLI 431
               NK ++              + +V+   I+      +    EL +    +S +  L+
Sbjct: 340 D---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLV 396

Query: 432 DL 433
            +
Sbjct: 397 GM 398


>gi|116326478|ref|YP_803198.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
 gi|115344071|gb|ABI95080.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
          Length = 442

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 167/422 (39%), Gaps = 34/422 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + +  D     V    + D     P       P VL+NG  GIA G AT I  H++  
Sbjct: 125 NFYNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  +    +        +  P+F    V I G+  I+  Y               
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------------- 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                 R Q+ +TEIPY+ ++   + KI + + +K  +   D   E       +   E  
Sbjct: 224 ----TSRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYF 279

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +    ++ +   L    S N+  +N  G       ++ ++K FV  R+  V +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLI 431
               NK ++              + +V+   I+      +    EL +    +S +  L+
Sbjct: 340 D---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLV 396

Query: 432 DL 433
            +
Sbjct: 397 GM 398


>gi|116582925|gb|ABK00080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 110/141 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++A+Y+ + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYNTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735138|gb|ACF20078.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 107/141 (75%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+  +Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDCPVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|314121841|ref|YP_004063960.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151598|gb|ADR32654.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 444

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 100/489 (20%), Positives = 183/489 (37%), Gaps = 55/489 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   S+ D +    L+YAI  + GRAIP++ DG KPVHR ++   + +      K+ K 
Sbjct: 3   SLNPRSLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKV 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I+G V    + HG A+  +A + +   +     + +GQGNFGS      ++ RY   R
Sbjct: 63  ASIAGGVADYGYHHGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K  + L  D     V      D   + P       P VL+N   GIAVG AT+I  H+
Sbjct: 123 VSKNFYNLFKDTEYAPVHP----DEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHS 178

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             +V +   A+++      + +   ++ P+F        R  +      G+  +      
Sbjct: 179 FQDVKEAVKAIVEG----REPVAPKVKYPEF--------RGEVVELEEPGKYEL------ 220

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H       R Q+ +TEIP Q N      KI + + EK  +   D   E    G+++    
Sbjct: 221 HGTYKMTSRTQMEITEIPVQWNLEKYTSKILDPLEEKGFITWKDNCGEHGF-GFKIKFRK 279

Query: 315 KRGAS--ADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVV 370
           +       +    ++ +   L    S N+  LN  G   E    + +++ FV  R+  V 
Sbjct: 280 EYKLDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKTYVQ 339

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R    + +      +       +  + +   +I+  P     R++L++    +    D 
Sbjct: 340 VRIDSKIKETEAAFKLARAKVFFIKEVIDGKVVIQGKP-----RKKLIEELQASEIYGDY 394

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                                     ++ + +  +T      + +E  +   E +     
Sbjct: 395 -----------------------AEKLVAMNIYHMTSDEAKKLADEAKAKKAEHEYWKAT 431

Query: 491 LSSRSRLLG 499
                 L  
Sbjct: 432 DVKTEYLND 440


>gi|228861192|ref|YP_002854215.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438866|gb|ACP31178.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 442

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 167/422 (39%), Gaps = 34/422 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + +  D     V    + D     P       P VL+NG  GIA G AT I  H++  
Sbjct: 125 NFYNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  +    +        +  P+F    V I G+  I+  Y               
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------------- 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                 R Q+ +TEIPY+ ++   + KI + + +K  +   D   E       +   E  
Sbjct: 224 ----TSRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +    ++ +   L    S N+  +N  G       ++ ++K FV  R+  V +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLI 431
               NK ++              + +V+   I+      +    EL +    +S +  L+
Sbjct: 340 D---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLV 396

Query: 432 DL 433
            +
Sbjct: 397 GM 398


>gi|291290484|dbj|BAI83279.1| topoisomerase II medium subunit [Enterobacteria phage AR1]
          Length = 442

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 167/422 (39%), Gaps = 34/422 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + +  D     V    + D     P       P VL+NG  GIA G AT I  H++  
Sbjct: 125 NFYNVYKDTEYAPV----HQDKEHIPPAFYLPVIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  +    +        +  P+F    V I G+  I+  Y               
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------------- 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                 R Q+ +TEIPY+ ++   + KI + + +K  +   D   E       +   E  
Sbjct: 224 ----TSRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +    ++ +   L    S N+  +N  G       ++ ++K FV  R+  V +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLI 431
               NK ++              + +V+   I+      +    EL +    +S +  L+
Sbjct: 340 D---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIEMYSSYVDKLV 396

Query: 432 DL 433
            +
Sbjct: 397 GM 398


>gi|116089891|gb|ABJ55665.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 143

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 109/143 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYGTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHN 194
           PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHN 143


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 102/515 (19%), Positives = 201/515 (39%), Gaps = 56/515 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  ++  D +    + ++    + R+IP L DGLKP  R+ILF   +  +    K  
Sbjct: 773  DHTIKEMTFPDFINKELIHFSWAANI-RSIPSLIDGLKPGQRKILFASFKRRLTSEIKVS 831

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + +    E    +H  G  ++   + +MA ++  S  + L+   G FG+    GD  A+ 
Sbjct: 832  QLSGYVAEQTSYHH--GEQSLNSTIIKMAHNFVGSNNIPLLTPSGQFGTRLQGGDDSASA 889

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L+  +  L +++    +++    +G   +P       P VLVNG  GI VGMAT
Sbjct: 890  RYIFTKLEPISRHLFNEMDDALLNYL-EEEGESIQPDYYVPIIPMVLVNGSEGIGVGMAT 948

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  +  ++++  +  +DN                 P   +I    G K        S 
Sbjct: 949  TIPLFSPIDLIEQIICRLDNVP---------------PLKKIIPWYRGFKGTIQPNLKSY 993

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
               GV        D + +V++E+P     +   + + +L+ +  I    +   E+     
Sbjct: 994  KTNGVIKF-----DGKGLVISELPIGKWTSDYKDVLNDLIEKDVIRGFQEANTENSVHFN 1048

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFRE 366
             ++   +     D+  N++     L S   +N+   +      +  +   I+  F   R 
Sbjct: 1049 ILLSNQQMEEMEDLSENEMITLFKLSSNLHLNLTVFDEKNKIVKYESPEEIIDHFFNIRL 1108

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            E   +R          R+H++  L   +  L   ++ +        A  +L  +      
Sbjct: 1109 EFYNKR----------RSHLMASLTQQIKRLSSTIKFLET-----IASGKLKIQGRTKQQ 1153

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            + D ++    S +  GS        + + +IL+     +T    D+++++LN   +E  +
Sbjct: 1154 LIDDLE----SQHDFGSHTPEEYQHLFSLSILD-----ITKERIDNLQSQLNKRQVEFNQ 1204

Query: 487  CLDILSSR--SRLLGIIKQELLSVKDELDTPRRTR 519
              D  SS      L  +K+ L   +D    P +T 
Sbjct: 1205 IKDSDSSSLWKADLKQLKEYLEKSQDFQKKPLKTE 1239


>gi|193735144|gb|ACF20081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735136|gb|ACF20077.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|108937146|gb|ABG23385.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|116582920|gb|ABK00079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y+ + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/489 (18%), Positives = 184/489 (37%), Gaps = 54/489 (11%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T +++ D +    + ++      R+IP++ DGLK   R+IL+   +  +    K  + + 
Sbjct: 161 TKITLGDFIHREMIHFSKY-DCDRSIPNMMDGLKVSQRKILYSAFKKNLVHEIKVAQFSG 219

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTE 132
              E  G +H  G  ++  A+  MAQ++    ++ +L+  GQ       G   A+ERY  
Sbjct: 220 YVSEHSGYHH--GENSLNGAIVNMAQNFVGSNNINILMPNGQFGTRLQGGKDSASERYIF 277

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             L K    +        + +  + DG+F EP+      P +LVNG  GI  G +T+IP 
Sbjct: 278 TNLNKITRMIFKKEDDAILTYLKD-DGTFVEPIYYLPILPMILVNGTKGIGTGFSTDIPC 336

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +  ++++     + +     D                  G  G       G    + +G
Sbjct: 337 FHPVQLINYIQHKLADKAYTRD------------FVPFYQGFQGTIE--KDGDRRFITKG 382

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              I     D++ I +TE+P  V     +  + + +   +     D +D+S  +     +
Sbjct: 383 NYTI-----DKQVITITELPIGVWNEDYILHLEKCMDILK-----DYKDQSTDKKVYFKL 432

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            LK+    +  L + ++ ++  S+ ++N+   N        +  I   F+  R +   +R
Sbjct: 433 TLKQ-PMEESDLIKTFKLSTTLSINNMNLFDHNDKLKHYNEVYEICDDFIGIRLDYYEKR 491

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             +L+   ++   VL      +  L      +R   N +                    D
Sbjct: 492 RLHLIQILKEEMEVLKNKCNYINELLNDTLDLRKKTNNDI------------------CD 533

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           +++   YT  +D   YL ++   ++ +  +  L        ++E + +        DI  
Sbjct: 534 ILEKKKYTKINDSYHYLIKMSMDSVCQENVDSLNQQLNGK-QSEYDKMWNS--SHKDIWK 590

Query: 493 SRSRLLGII 501
                L  +
Sbjct: 591 DELEQLKKV 599


>gi|254729444|gb|ACT79806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/125 (60%), Positives = 103/125 (82%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKA 138
           RL K 
Sbjct: 126 RLAKI 130


>gi|193735140|gb|ACF20079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYTMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|194360501|gb|ACF57898.1| DNA gyrase A subunit [Actinomyces odontolyticus]
          Length = 188

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 102/188 (54%), Positives = 131/188 (69%), Gaps = 6/188 (3%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           + VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL E+  G    +D+
Sbjct: 2   ECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNLRELARGVEWALDH 61

Query: 209 PDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           P+   + L+E    +I GPDFPTGA ILGR GI++AY TGRGSI  R V  +E+    R+
Sbjct: 62  PEATREELLEALIKLIPGPDFPTGATILGRKGIEDAYRTGRGSITQRAVVSVEEIQ-GRQ 120

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVI 323
            +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE+  R G R+VI LKR A A V+
Sbjct: 121 CLVVTELPYQVNPDNLADKIAQLVRDGQIGGIADIRDETSGRTGQRLVIVLKRDAVAKVV 180

Query: 324 LNQLYRYT 331
           LN LY+ T
Sbjct: 181 LNNLYKRT 188


>gi|108937138|gb|ABG23381.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|108937142|gb|ABG23383.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 110/141 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/517 (14%), Positives = 179/517 (34%), Gaps = 42/517 (8%)

Query: 14   KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
              +  +  ++ +    + +++     R+IP + DGLKP  R++++   +  ++   K ++
Sbjct: 770  HRLDEIPYSEFVNKELILFSM-ADNIRSIPSIADGLKPDQRKVIWSCFKRNLKKEIKVIQ 828

Query: 74   CARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAER 129
                  E    +H  G+A++   +  +AQD+    +L LL+  GQ     + G   A+ R
Sbjct: 829  LVGYVSEHSVYHH--GDASLTQTIVALAQDFVGSNNLNLLVPCGQYGTRDMGGKDHASAR 886

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y    LQ  +  + +      +  +   +    EP       P VL+NG  GI  G +TN
Sbjct: 887  YINTLLQPISRTIFNPDDDAILTPQ-TDENHVIEPEFYMPIVPMVLINGAEGIGTGWSTN 945

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            +P  N  ++V     +++N +               P      G  G     A  +  + 
Sbjct: 946  VPGFNPLDIVANIRRLMNNEEQ-------------VPMHPWWRGFKGEIKQTAKNKYDVT 992

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGY 308
                     T  D   + +TE+P          ++  ++  ++    + + ++    +  
Sbjct: 993  GV------VTKVDDTTVEITELPIHKWTQTFKTELETMLVGEKGEGSVKNYQEHHANENV 1046

Query: 309  RVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
              V+++            L   ++ TS  +  ++     +G   +  +   IL  F A R
Sbjct: 1047 HFVVQMDAKELVKAEEKGLLEYFKLTSKITTSNMICFDFDGKIKKYESPEAILDEFYAVR 1106

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
                 +R  +L ++ +     L   A  V  + E    +      +              
Sbjct: 1107 LGYYQKRKDHLASQLQMVFERLSNQARFVQMIVEKKLAVSGRKRADIVVDLKKHDFKPFP 1166

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNELNSL 480
              K     +   +     +     +E +        +L + +  LT    + +R +    
Sbjct: 1167 KKKAKTTSVGPEAEDEEEEDPDAGTEAEGSASDYDYLLSMPIWNLTKEKFEKLRKQAADQ 1226

Query: 481  GIEIKEC-----LDILSSR-SRLLGIIKQELLSVKDE 511
              E+         D+ ++   + +    +     +++
Sbjct: 1227 EAELLRLLEKTPKDLWNADLDKFMEDWSKSEEDFQNK 1263


>gi|11245231|gb|AAG33513.1|AF302676_1 topoisomerase II [Enterobacter cloacae]
          Length = 135

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/134 (60%), Positives = 106/134 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD     RYTE R+ K AH L+ DL
Sbjct: 61  PHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAGVMRYTEIRMSKIAHELMADL 120

Query: 147 GKDTVDFRPNYDGS 160
            K+T DF  NY+G+
Sbjct: 121 EKETDDFVDNYNGT 134


>gi|330858778|ref|YP_004415153.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
 gi|327397712|gb|AEA73214.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
          Length = 442

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 167/422 (39%), Gaps = 34/422 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + +  D     V    + D     P       P VL+NG  GIA G AT I  H++  
Sbjct: 125 NFYSVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  +    +        +  P+F    V I G+  I+  Y               
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------------- 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
                 R Q+ +TEIPY+ ++   + KI + + +K  +   D   E       +   E  
Sbjct: 224 ----TSRTQMNITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHGFGFKVKFRKEYS 279

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
              + +    ++ +   L    S N+  +N  G       ++ ++K FV  R+  V +R 
Sbjct: 280 LSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRI 339

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLI 431
               NK ++              + +V+   I+      +    EL +    +S +  L+
Sbjct: 340 D---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVDKLV 396

Query: 432 DL 433
            +
Sbjct: 397 GM 398


>gi|193794284|gb|ACF21354.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIH-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|261599199|gb|ACX85662.1| ParC [Streptococcus oralis]
          Length = 161

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 111/154 (72%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ 
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 67  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            + +EP VL A +PN+LVNG  GI+ G AT IP 
Sbjct: 127 DTEKEPTVLPAAFPNLLVNGSTGISAGYATEIPP 160


>gi|108937144|gb|ABG23384.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|108937140|gb|ABG23382.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|116582927|gb|ABK00081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193794070|gb|ACF21247.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794156|gb|ACF21290.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794182|gb|ACF21303.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794236|gb|ACF21330.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794248|gb|ACF21336.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794268|gb|ACF21346.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794276|gb|ACF21350.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 104/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|193794228|gb|ACF21326.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 104/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLEALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|193735146|gb|ACF20082.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDYAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 98/536 (18%), Positives = 194/536 (36%), Gaps = 57/536 (10%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                 +  +T + ++D +    + +++     R+I  + DG KP  R++LFG  +     
Sbjct: 752  PGTHLDPKLTHIPVSDFINKELILFSM-ADNMRSIASVCDGFKPGQRKVLFGSFKRKFTV 810

Query: 68   NKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDG 122
            +   ++ A++ G +     + HG A++   +  MAQD+  S  + L++  G FGS    G
Sbjct: 811  S---IRVAQLVGYISEHTGYHHGEASLGSTIMAMAQDFAGSNNIYLMKPDGGFGSRSQGG 867

Query: 123  DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
               AA RY +  L      + +   +   ++    D +  EP       P +LVNG  GI
Sbjct: 868  KDAAAMRYAQTELMDITKAIFNKQDEPLYNYV-TDDDTPVEPEYYLPVLPMLLVNGCEGI 926

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T+IP +N  ++VD    ++ +              P  P      G  G      
Sbjct: 927  GSGWSTSIPPYNPLDIVDNLRRMLKDE-------------PPVPMIPWFRGWHGEVEPVG 973

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL-VREKRIVDIADLRD 301
             GR  +       IE+   D   + +TE+P ++   +M E +    +  K      +   
Sbjct: 974  DGRYKVKGL----IEQV--DERTLCITELPARMWTISMKEFLLSSLIDSKNEKGWIEDFT 1027

Query: 302  ESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            E      +  I L            L   ++  S  S  ++      G   +  +   I+
Sbjct: 1028 EDHGFRVKFNITLSEKEMEKTRQIGLRERFKLISSLSTSNMVAFDPEGRIKKYDSPEAIM 1087

Query: 359  KAFVAFREEVVVRRT-------KYLLNKARDRAH-----VLVGLAIAVANLDEVVRIIRF 406
            K +   R E   +R        +  L K   +A      +   L I       ++  +  
Sbjct: 1088 KEYFPVRLEFYQKRKDRLVSDFEQQLEKLTAQARFIKLIIDKKLNINNKGRKVLIAELSE 1147

Query: 407  SPNP----------ETARRELMQ-RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
               P            A+  + +     + ++ + +   ++    I ++G  YL  +   
Sbjct: 1148 LKFPRYGKNGERLASDAKAAIAEDEEAPSDEVAEDLAEAEEIHGKIPTNGYDYLLGMALW 1207

Query: 456  AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            ++ + R  +L    RD    EL  L  +  + + +      +    K E   V+ +
Sbjct: 1208 SLTKERYEKLLR-ERDGKEEELIELLKKSAKDIWMDDLDVFMEAYEKFEEQDVEKQ 1262


>gi|228861574|ref|YP_002854595.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|227438590|gb|ACP30903.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
          Length = 442

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 170/425 (40%), Gaps = 40/425 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K A I
Sbjct: 5   NRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  +  DA A MA  W+    L++GQGNFGS      AA RY   R+ K
Sbjct: 65  AGGVADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + +  D     V    + D     P       P VL+NG  GIA G AT I  H++  
Sbjct: 125 NFYNVYKDTEYAPV----HQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSS 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  +    +        +  P+F    V I G+  I+  Y               
Sbjct: 181 VKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------------- 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                 R Q+ +TEIPY+ ++   + KI + + +K  +   D   E     +   ++ ++
Sbjct: 224 ----TSRTQMHITEIPYKYDRETYVSKILDPLEDKGFITWDDACGEHG---FGFKVKFRK 276

Query: 317 GA----SADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVV 370
                 + +    ++ +   L    S N+  +N  G       ++ ++K FV  R+  V 
Sbjct: 277 EYSLCDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQ 336

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIK 428
           +R     NK ++              + +V+   I+      +    EL +    +S + 
Sbjct: 337 KRID---NKIKETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELSKIDMYSSYVD 393

Query: 429 DLIDL 433
            L+ +
Sbjct: 394 KLVGM 398


>gi|193794294|gb|ACF21359.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ +
Sbjct: 183 NLYKRS 188


>gi|193794190|gb|ACF21307.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY +GRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRSGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|193794194|gb|ACF21309.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794204|gb|ACF21314.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794206|gb|ACF21315.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 103/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIH-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1404

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 95/524 (18%), Positives = 192/524 (36%), Gaps = 53/524 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  + ++ I+D +    + +++     R+IP + DG KP  R++LF   ++ + +  K  
Sbjct: 663  DPNLDAIPISDFINKELILFSL-ADNVRSIPSVLDGFKPGQRKVLFCCFKINLTYEIKVG 721

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
              A    E    +H  G  ++   +  +AQ++  +  + L++  G+FGS    G   AA 
Sbjct: 722  TLAAKVSEKTSYHH--GEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDAAAA 779

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L K A  +         ++  + DGS  EP       P VLVNG  GI  G +T
Sbjct: 780  RYIHTQLNKVARSIFHPSDDALFNYLED-DGSPIEPEWYLPIIPMVLVNGAEGIGTGWST 838

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            NIP+ N  +++     ++++  +D                    G  G+           
Sbjct: 839  NIPSFNPLDIIKNIRHLMNDEVMDE-------------MYPWYRGWKGVVEKVDD----H 881

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    +E+       + +TE+P +   +++ E +   +   EK    I D+ ++    
Sbjct: 882  RFRLYGKVEQV--GPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDMEEQHTND 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAF 364
               ++       +    +    R+  +  +   NMVA   +G   +  T++ IL  F   
Sbjct: 940  IRFIITLTPEEMAKTKKIGVYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDILTEFYYV 999

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R E   +R  Y+  K +     +    +    +         +   +   +EL    +  
Sbjct: 1000 RLEFYQKRKDYMSQKLQWTVEKIS-FQVKFLKMIIDKEYTVSNKAKKIIMKELEGFGFPR 1058

Query: 425  SDIKD---LIDLIDDSSYTIGSDGTMYLSEVQ-------------TRAILELRLARLTGL 468
             +         +  +             +E Q                +L ++L  LT  
Sbjct: 1059 INKDGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDYLLGMKLWDLTME 1118

Query: 469  GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
              + +R +     IE++  L +  S   L      +L + + E 
Sbjct: 1119 RYEKLRAQKQEKEIELETLLKL--SPKDLWNT---DLEAFEKEY 1157


>gi|193794068|gb|ACF21246.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794072|gb|ACF21248.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794074|gb|ACF21249.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794076|gb|ACF21250.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794078|gb|ACF21251.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794082|gb|ACF21253.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794086|gb|ACF21255.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794088|gb|ACF21256.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794090|gb|ACF21257.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794092|gb|ACF21258.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794094|gb|ACF21259.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794096|gb|ACF21260.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794098|gb|ACF21261.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794106|gb|ACF21265.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794108|gb|ACF21266.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794110|gb|ACF21267.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794114|gb|ACF21269.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794116|gb|ACF21270.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794124|gb|ACF21274.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794128|gb|ACF21276.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794130|gb|ACF21277.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794132|gb|ACF21278.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794136|gb|ACF21280.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794138|gb|ACF21281.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794142|gb|ACF21283.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794144|gb|ACF21284.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794146|gb|ACF21285.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794148|gb|ACF21286.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794150|gb|ACF21287.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794158|gb|ACF21291.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794160|gb|ACF21292.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794170|gb|ACF21297.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794176|gb|ACF21300.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794178|gb|ACF21301.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794180|gb|ACF21302.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794188|gb|ACF21306.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794192|gb|ACF21308.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794198|gb|ACF21311.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794200|gb|ACF21312.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794202|gb|ACF21313.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794208|gb|ACF21316.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794210|gb|ACF21317.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794212|gb|ACF21318.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794216|gb|ACF21320.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794218|gb|ACF21321.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794222|gb|ACF21323.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794232|gb|ACF21328.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794238|gb|ACF21331.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794240|gb|ACF21332.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794242|gb|ACF21333.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794246|gb|ACF21335.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794250|gb|ACF21337.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794252|gb|ACF21338.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794254|gb|ACF21339.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794256|gb|ACF21340.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794258|gb|ACF21341.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794260|gb|ACF21342.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794262|gb|ACF21343.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794278|gb|ACF21351.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794282|gb|ACF21353.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794298|gb|ACF21361.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|193794280|gb|ACF21352.1| DNA gyrase subunit A [Actinomyces johnsonii]
 gi|193794292|gb|ACF21358.1| DNA gyrase subunit A [Actinomyces johnsonii]
          Length = 188

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|261599195|gb|ACX85660.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 111/152 (73%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ 
Sbjct: 8   ERALPDIRDGLKPVQRRILYSMNKDGNAHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMV 67

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N+D
Sbjct: 68  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWNFD 127

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            + +EP VL A +PN+LVNG  GI+ G AT+I
Sbjct: 128 DTEKEPTVLPAAFPNLLVNGATGISAGYATDI 159


>gi|190888732|gb|ACE95991.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 143

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/143 (58%), Positives = 109/143 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVV 166
            ++ KDTVDF  NYD S QEPVV
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVV 143


>gi|194360503|gb|ACF57899.1| DNA gyrase A subunit [Actinomyces gerencseriae]
          Length = 188

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    +++PD
Sbjct: 4   VDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVASGVQWFLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E + GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLESLIERVPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVGGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|261599197|gb|ACX85661.1| ParC [Streptococcus parasanguinis]
          Length = 160

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/154 (53%), Positives = 113/154 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           N+D + +EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATD 157


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 92/515 (17%), Positives = 181/515 (35%), Gaps = 64/515 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++     R+IP + DG KP  R++L+   +  +   KK  
Sbjct: 662  DPTLNEIPISDFINKELILFSL-ADNVRSIPSVLDGFKPGQRKVLYTCFKKNLTTEKKVA 720

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
              A    +    +H  G  A+   +  MAQ++  +  +  ++  G FG+    G   AA 
Sbjct: 721  NLAPAVSDYTAYHH--GEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRATGGKDAAAA 778

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K A  +          +    D    EP       P VL+NG  GI  G +T
Sbjct: 779  RYIYTELNKIARKVFHPADDPLFRYVQE-DEKTVEPEWYLPVVPMVLINGAEGIGTGWST 837

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP  N  +VV+    ++++ ++D                    G TG          S 
Sbjct: 838  SIPPFNPLDVVNNIRHLLNDEEMDD-------------MHPWFRGWTGTMEKIE----SQ 880

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   EK    I D+ +E   +
Sbjct: 881  RYRMYGRIEQV--GPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIKDM-EEQHAE 937

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVA 363
              + +I+L             Y    L S  S+  +    Y+    +   +  ILK F  
Sbjct: 938  TIKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHVHEILKDFYE 997

Query: 364  FREEVVVRRTKYLLNKARDRAH------------VLVGLAIAVANLDEVVRIIRFSPNPE 411
             R E   +R  Y+  + +  A             +   L +      +++  +     P 
Sbjct: 998  VRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIIDKSLIVTNKPKKQLISELEELGFPR 1057

Query: 412  TARRELMQRSWNASDIKDLIDLID----------------DSSYTIGSDGTMYLSEVQTR 455
              +           +++ +I   +                D   T+     ++ +     
Sbjct: 1058 INKEGKPHFGKIDEEVEAIISEDEDEDLEESEEATRKKDKDDESTVNGPEELFGTY---E 1114

Query: 456  AILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             +L L++  LT    + +  +      E++  L +
Sbjct: 1115 YLLGLKIWSLTKERYEKLLKQKQEKETELENLLKL 1149


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 102/530 (19%), Positives = 193/530 (36%), Gaps = 63/530 (11%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               +   +   + VSI D +    + ++    + R+IP + DGLKP  R++L G +Q  +
Sbjct: 673  FDPESYIDYEKSPVSIYDFINKELIQFSRQDCI-RSIPSMIDGLKPSQRKVLHGCIQRNL 731

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVD 121
                K V+ +    E +  +H  G  ++   +  MAQD+    ++  L+  GQ     + 
Sbjct: 732  TKEIKVVQLSGYISESVLYHH--GEQSLNQTIISMAQDFVGSNNMNFLVPNGQFGTRLMG 789

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L      +  +     +  +   +G   EP       P VLVNG  G
Sbjct: 790  GKDSASPRYIYTYLHPITKHVFREEDSALLPSQ-EEEGVHIEPSYYLPILPTVLVNGAVG 848

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +TN+  HN  EV D  +A +     +             P      G  G     
Sbjct: 849  IGTGWSTNVCNHNPIEVADALIAQLRGTRSNR------------PLYPWYRGFVG--QIL 894

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                G  V   VS I     D   + +TE+P         + + +LV +  +  +   R+
Sbjct: 895  KKENGYQVCGNVSWI-----DENTLAITELPVGRWTQDYKQFLCDLVEQGDV--VTGFRE 947

Query: 302  ESDRQGYRVVIELKRGASADVILNQL-----YRYTSLQSLFSVNMVALNGYKPERFTLIG 356
                      + +K+  +A++  N+       R     +  +  +    G+         
Sbjct: 948  NHTDTEVMFTVTVKKEKAAELKENREKLMKDLRLIGSLTTSNFILFNSKGHIHHYKDANE 1007

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            I++ F+ FR     +R + L+ +   +  +L   +  + ++ +   ++   P  +     
Sbjct: 1008 IMEEFIEFRLPFYQQRRENLMKQLDKKCKLLENKSNFIQHVVDGSLVLHDRPIKKV---- 1063

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                      I D+  L      + G   T          +L L L  LT   R  +   
Sbjct: 1064 ----------ISDMEALGLMKIGSDGETSTY-------DYLLNLPLNGLTEEKRKQL--- 1103

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT---PRRTRIVEG 523
             ++   E KE  ++L+S+     +  ++L   K         R + +V+G
Sbjct: 1104 -DTEMKETKEKKEVLNSKES-KDLWIEDLEEFKSNFIQMEAKRLSELVQG 1151


>gi|193794080|gb|ACF21252.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794084|gb|ACF21254.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794100|gb|ACF21262.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794102|gb|ACF21263.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794104|gb|ACF21264.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794112|gb|ACF21268.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794118|gb|ACF21271.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794120|gb|ACF21272.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794122|gb|ACF21273.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794126|gb|ACF21275.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794134|gb|ACF21279.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794140|gb|ACF21282.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794152|gb|ACF21288.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794154|gb|ACF21289.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794162|gb|ACF21293.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794164|gb|ACF21294.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794166|gb|ACF21295.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794168|gb|ACF21296.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794172|gb|ACF21298.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794174|gb|ACF21299.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794184|gb|ACF21304.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794186|gb|ACF21305.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794196|gb|ACF21310.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794214|gb|ACF21319.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794220|gb|ACF21322.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794224|gb|ACF21324.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794226|gb|ACF21325.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794230|gb|ACF21327.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794234|gb|ACF21329.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794244|gb|ACF21334.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794264|gb|ACF21344.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794266|gb|ACF21345.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794270|gb|ACF21347.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794272|gb|ACF21348.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794274|gb|ACF21349.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794286|gb|ACF21355.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794288|gb|ACF21356.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794290|gb|ACF21357.1| DNA gyrase subunit A [Actinomyces naeslundii]
          Length = 188

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 103/186 (55%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    +++PD
Sbjct: 4   VDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|219815933|gb|ACL37053.1| GyrA [Salmonella enterica]
          Length = 135

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/134 (61%), Positives = 109/134 (81%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 2   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 61

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 62  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 121

Query: 141 FLLDDLGKDTVDFR 154
            L+ DL K+TVDF 
Sbjct: 122 ELMADLEKETVDFV 135


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 95/527 (18%), Positives = 186/527 (35%), Gaps = 56/527 (10%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +   +  I  +     +    + ++ N    R+IP L DGLKP  R+ILF   +  + 
Sbjct: 649  DPNSFVDYNIKQLRSKXFIDRELIHFS-NADNLRSIPSLCDGLKPGQRKILFSCFKRNL- 706

Query: 67   WNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVD 121
              K  +K A++ G V     + HG  ++   +  MAQ++  S  + L+   G FG  +  
Sbjct: 707  --KSEIKVAQLIGYVAEHSAYHHGEQSLASTIIGMAQNFVGSNNINLMMPIGQFGTRNQG 764

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY    L K    L  +     + +  + D    EP       P  LVNG  G
Sbjct: 765  GKEHASARYIFTSLSKITRILFPEHDDHVLKYLED-DNQVVEPEWYMPIIPMCLVNGSSG 823

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +T+IP +N   +V+     ++                         G  G     
Sbjct: 824  IGTGWSTDIPNYNHKGIVEQIRGKLEGRPFTE-------------LHPWYKGFQGQIEI- 869

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM-LEKIAELVREKR-IVDIADL 299
               +G  +++G   I++     E I +TE+P         +  I EL+   +   +I D+
Sbjct: 870  -NPKGGYIVKGQYEIDEVE---ETIKITELPVGKWTRDYKVVLIQELLSPPKGEPEIEDI 925

Query: 300  RDESDRQGYRVVIELKRGASADV-ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            R+          ++   G       + +  + ++     ++ M           + + I+
Sbjct: 926  REYHTNNRVHFEVQAIPGRIQQWGDIEKKLKLSTTMQTTNIVMFNDKYKLKRYQSTVEIM 985

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            + F A R +   +R  YL++K +    +L      +  +      IR +   +    +L 
Sbjct: 986  EEFYALRLKCYQKRKDYLVSKIQRDVDILQNKMKFITLVVNGTLEIRNAR-KKGVLNKLK 1044

Query: 419  Q-------------RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            +              + N  +  + +   ++       +G + LSE     +L + +  L
Sbjct: 1045 ELGLTPMSKITRINSTKNLDNEDEEVQQDEEEEEEQVQEGEIPLSEY--NYLLSMPIFSL 1102

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            T      ++ ++     E+                IK       D+ 
Sbjct: 1103 TEEKVLQLKKQVEEKESELLIL---------QKKEIKDMWTEDLDKF 1140


>gi|295394236|gb|ADG03729.1| DNA topoisomerase IV subunit A [Streptococcus salivarius]
          Length = 151

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 82/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|327179196|gb|AEA30141.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 141

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 86/141 (60%), Positives = 108/141 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 168 CARYPNVLVNGGGGIAVGMAT 188
             + PN+LVNG  GIAVG AT
Sbjct: 121 PTKIPNLLVNGSSGIAVGKAT 141


>gi|311992744|ref|YP_004009612.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
 gi|298684527|gb|ADI96488.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
          Length = 442

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 114/464 (24%), Positives = 194/464 (41%), Gaps = 34/464 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +T+ + N    YAI  +  RAIP++ DG+KPVHR +L+  MQ+     +K  K A ++G 
Sbjct: 7   LTEVINNEAKEYAIYTVEQRAIPNMIDGMKPVHRFMLYRAMQLAKGDKEKMHKLASVAGG 66

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V    + HG  +  DA A MA  WS     ++G+GNFGS      AA RY  CR+ +   
Sbjct: 67  VADAGYHHGEGSAQDAGALMANTWSNNFPFLDGEGNFGSRLVQQAAASRYIFCRISENFS 126

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +  D     V    + D   + P       P VL+NG  GIA G ATNI  H++  V++
Sbjct: 127 KVFKDENVAPV----HEDPEHKPPRFYLPVIPVVLLNGVEGIATGYATNILPHSIKSVIE 182

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                ++      +  +E       P  +  + R G K           + G   I    
Sbjct: 183 CTRQALNGVVDIKEPSVEY------PKFSGKIYRDGPK---------CELHGTYKI---- 223

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + Q+ +TEIPY  ++A  +EK+ + + +K  +  +D   ++       + +       
Sbjct: 224 TSKTQMEITEIPYSFDRAKYVEKVLDPLEDKGFISYSDNCGKNGFGFKIKMRKEAGLELT 283

Query: 321 DVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +   +++ +   L    S N+  +  NG      + + ++K FV  R E V +R      
Sbjct: 284 EENHDKIMKMFGLIERLSQNITVIDENGKLRVFESAVELIKHFVEVRTEYVKKRIH---A 340

Query: 379 KARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           K  +       L      ++ V+   I+      +    EL      A   ++L+ L   
Sbjct: 341 KIIETDSKAKILTAKARFINAVIKGDIVIAGKTRKQLVEELKAIDNLAQYAEELVLL--- 397

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           + Y I SD    L+     AI + +  R T    +  + +L+ L
Sbjct: 398 NIYHITSDEARKLALAAKAAIEDNQYWRETTAEVE-YQKDLDQL 440


>gi|193794296|gb|ACF21360.1| DNA gyrase subunit A [Actinomyces viscosus]
          Length = 188

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 132/186 (70%), Gaps = 6/186 (3%)

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF+ NYDG  +EPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    +++PD
Sbjct: 4   VDFQDNYDGRNKEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPD 63

Query: 211 IDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
              + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R+ +
Sbjct: 64  ASREELLDALIEQIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCL 122

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILN 325
           VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE+  R G R+VI LKR A A V+LN
Sbjct: 123 VVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLN 182

Query: 326 QLYRYT 331
            LY+ T
Sbjct: 183 NLYKRT 188


>gi|261599191|gb|ACX85658.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 115/156 (73%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
            N+I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++I
Sbjct: 2   SNIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSI 61

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDA+ARM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +
Sbjct: 62  YDAMARMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPW 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             N+D + +EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 122 AWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATD 157


>gi|259020306|gb|ACV90437.1| DNA gyrase subunit A [Vibrio cholerae O139]
          Length = 151

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 94/150 (62%), Positives = 117/150 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GI
Sbjct: 61  DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGI 120

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           AVGMATNIP HNLGEV+DGC+A IDN  I 
Sbjct: 121 AVGMATNIPPHNLGEVIDGCLAYIDNEAIT 150


>gi|295394226|gb|ADG03724.1| DNA topoisomerase IV subunit A [Streptococcus mutans]
          Length = 151

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G VMG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R  LIE  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEIADYLLQDIDKNTVAWAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|308199035|dbj|BAJ22652.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199041|dbj|BAJ22655.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 158

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/158 (57%), Positives = 115/158 (72%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+
Sbjct: 61  GNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNL 120

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           L+NG  GIAVGMATNIP H+L E++DG + ++D+ D  
Sbjct: 121 LLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDAS 158


>gi|153025|gb|AAA26636.1| gyrase A [Staphylococcus aureus]
          Length = 146

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDF 153
           YTE R+ K    LL D+ KDT+DF
Sbjct: 123 YTEARMTKITLELLRDINKDTIDF 146


>gi|24216892|ref|NP_714373.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659166|ref|YP_003252.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198273|gb|AAN51391.1|AE011572_13 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602412|gb|AAS71889.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 462

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/513 (21%), Positives = 192/513 (37%), Gaps = 60/513 (11%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+  + ++        D++ +    Y+  V   RAIP   DGLKPV RRIL+ M      
Sbjct: 4   SNPPKSKESFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMWNSDAR 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD--WSLRLLLIEGQGNFGSV-DGD 123
              +Y K  +++G  MG YHPHG+ +I DAL++MAQD  ++  + L+ G+G FG V D  
Sbjct: 64  N--RYTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPS 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             A+ RYTE +L      L        +D+  NYD +  EP+    + P VL+N   GIA
Sbjct: 121 AIASPRYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
            G    IP H L ++V   +  + +                           G      T
Sbjct: 181 TGFRCFIPGHRLADIVKSQINYLKSKKP-------------LSLKPWYKDFNGEVKMAET 227

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
             G+I +      +      + + +T+ P   N+  ++  + + + E++   + D  D S
Sbjct: 228 ETGNITMSTTFAFKWEG---DTLYLTDSPMNWNREKVI-SLLDDILERKDSWLKDYVDYS 283

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            +     +   K    +   +  L+    +Q+L     V     K + F    I+K F  
Sbjct: 284 SQTFRVELQYKKGEKPSQKEIMALFNKEDVQTL--AMNVITYDGKLKNFKPEEIIKRFCD 341

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLA--IAVANLDEVVRIIRFSPNPETARRELMQRS 421
           FR+  ++RR K L     ++      L   I     ++V+ I       E  +    +  
Sbjct: 342 FRKTHLIRRFKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFEEKLKTSKFKYF 401

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                              +  + + R+T          +    
Sbjct: 402 ---------------------------------EWLSTIPVYRMTIEEVKKCEEAIVEAK 428

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             +     ++    +L   +  EL  ++++ D 
Sbjct: 429 TTLARYQGLVKEDKKLTEFMIIELEELQNKWDK 461


>gi|167861160|gb|ACA05283.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+   P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTESIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|77166860|gb|ABA62406.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 144

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/143 (55%), Positives = 104/143 (72%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+ 
Sbjct: 2   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 61

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYTE RL  A+  
Sbjct: 62  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 121

Query: 142 LLDDLGKDTVDFRPNYDGSFQEP 164
           L++DL K+TV+  PNY+ + +EP
Sbjct: 122 LMEDLDKNTVEMVPNYNETKKEP 144


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 188/509 (36%), Gaps = 63/509 (12%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              +   D +    + +++     R+IP L DGLKP  R++LF   +  ++   K V+   
Sbjct: 638  KELGYQDFIHKELIHFSM-ADNIRSIPSLMDGLKPGQRKVLFACFKRNLKQEIKVVQLGG 696

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTE 132
               E    +H  G+ ++   +  MAQ++  S  + L+  +G FGS  + G   A+ RY  
Sbjct: 697  YIAEHSAYHH--GDISLVTTIIGMAQNFVGSNNINLLLPRGQFGSRAMGGKDHASARYIS 754

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
              L K   ++  +     V +  + DG   EP       P  LVNG  GI  G +T+I  
Sbjct: 755  TVLNKITRYIFPEQDDHVVKYIED-DGEMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQN 813

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +N  E+V+     ++    D   L    R  D              N      G+ +++G
Sbjct: 814  YNPVELVEQIKKRLNGEQFDN--LTPYYRNFD-------------GNIETQPNGNSLVKG 858

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +  IE  + + + + + E+P +       E + + + ++    I DLR+   +      I
Sbjct: 859  I--IEC-NEETDIVTIKELPIKKWTKNYKEWLDKEISQEGNP-IMDLREYHTKYKIHFEI 914

Query: 313  ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVV 369
            ++  G  +   L   Y Y  L + FS N + L   +    +  ++  IL+ F   R +  
Sbjct: 915  QMTEGYVSQ--LKNPYEYFKLVTPFSNNNMVLFDGQNKIKKFESIAEILEEFYQVRLQFY 972

Query: 370  VRRTKYLLNKARDRAHVLVGLAI-AVANLDEVVRIIRFSP-------------------- 408
             +R  YLL+K      +L   +      + E +R+                         
Sbjct: 973  QKRKDYLLSKLDREVQLLHNKSRFIKMVISEEIRLKNVKKADLVQQLDKNQFTRFSQLIT 1032

Query: 409  ----------NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
                      + +  ++ +     + +   + +      +     +    L       +L
Sbjct: 1033 VNSTKMQAFGDSKNPKKNVDDNDTSEASDDEQVSKKKPENTENQQNNKTTLDISDYNYLL 1092

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             + L  LT      + +ELNS      + 
Sbjct: 1093 SMPLFSLTNEKVLKLEDELNSKLQAKNKL 1121


>gi|66391455|ref|YP_238980.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
 gi|62288543|gb|AAX78526.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 387

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 160/382 (41%), Gaps = 36/382 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             SI D +Q   LT+A+  I  RAIP L DG KPVHR  +        +    + K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFVHS----AAKGGSGFQKVASI 57

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG  ++ +AL+ MA  W   + L +  G FGS     P A RY  C+L  
Sbjct: 58  AGGVAIYGYHHGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLSP 117

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               +  D         P+ D     P       P VLVNG  GIA G ATNIP H+   
Sbjct: 118 LFKAIYMDEDLTI----PHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPVS 173

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V++GCV+ ++  D  LD     ++ P F     I+  T              + G   ++
Sbjct: 174 VLNGCVSYLNGKDFTLD-----LKYPQFK--GDIVDGT--------------MYGKYELQ 212

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                + ++V+TEIP + ++   +  + +L  +  IV   DL  E  R    +  E   G
Sbjct: 213 ----GKTKLVITEIPVKYDRVKYIAILDKLEEKGCIVSYKDLSKEDFRYEITLKREYANG 268

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            + + IL     +  +++      V  NG          +LK FV  R  V  +R +  +
Sbjct: 269 LTHEKILKD---FGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRMTVYQQRIEKRI 325

Query: 378 NKARDRAHVLVGLAIAVANLDE 399
            +A++     +     +  + E
Sbjct: 326 QEAKEALARALAKVEFIDQMIE 347


>gi|78771376|gb|ABB51163.1| GyrA [Escherichia coli]
          Length = 128

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/123 (60%), Positives = 101/123 (82%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQ 136
           RL 
Sbjct: 126 RLA 128


>gi|308814624|ref|YP_003934898.1| topoisomerase II medium subunit [Shigella phage SP18]
 gi|308206216|gb|ADO19615.1| topoisomerase II medium subunit [Shigella phage SP18]
          Length = 443

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/486 (20%), Positives = 181/486 (37%), Gaps = 55/486 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
              + D +    L+YAI  + GRAIP++ DG KPVHR ++   + +      K+ K A I
Sbjct: 5   KRDLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASI 64

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           +G V    + HG A+  +A + +   +     + +GQGNFGS      ++ RY   R+ K
Sbjct: 65  AGGVADYGYHHGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVSK 124

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             + L  D     V      D   + P       P VL+N   GIAVG AT+I  H+  +
Sbjct: 125 NFYNLFKDTEYAPVHP----DEEHKPPAFYLPVIPTVLLNATSGIAVGFATDILPHSFQD 180

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V +   A+++      + +   ++ P+F        R  +      G+  +      H  
Sbjct: 181 VKEAVKAIVEG----REPVAPKVKYPEF--------RGEVVELEEPGKYEL------HGT 222

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                R Q+ +TEIP Q N      KI + + EK  +   D   E    G+++    +  
Sbjct: 223 YKMTSRTQMEITEIPVQWNLEKYTSKILDPLEEKGFITWKDNCGEHGF-GFKIKFRKEYK 281

Query: 318 AS--ADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRT 373
                +    ++ +   L    S N+  LN  G   E    + +++ FV  R+  V  R 
Sbjct: 282 LDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKTYVQVRI 341

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
              + +      +       +  + +   +I+  P     R++L++    +    D    
Sbjct: 342 DSKIKETEAAFKLARAKVFFIKEVIDGKVVIQGKP-----RKKLIEELQASEIYGDY--- 393

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                                  ++ + +  +T      + +E  +   E +        
Sbjct: 394 --------------------AEKLVAMNIYHMTSDEAKKLADEAKAKKAEHEYWKTTDVK 433

Query: 494 RSRLLG 499
              L  
Sbjct: 434 TEYLND 439


>gi|78771378|gb|ABB51164.1| GyrA [Escherichia coli]
          Length = 128

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/123 (60%), Positives = 102/123 (82%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQ 136
           RL 
Sbjct: 126 RLA 128


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 134/330 (40%), Gaps = 36/330 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH +  D    +   S+S  D +    + ++ +    R+IP L DGLKP  R++LF   +
Sbjct: 664 EHNLPEDYLYGQATKSLSYNDFVNKELVLFSNS-DNERSIPCLVDGLKPGQRKVLFCCFK 722

Query: 63  MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
                +K+ VK A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+
Sbjct: 723 RN---DKREVKVAQLAGSVAEMSAYHHGEVSLMMTIVGLAQNFVGSNNMNLLQPLGQFGT 779

Query: 120 --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLV 176
               G   A+ RY    L   A  +   +  + + +  NYD     EP       P VLV
Sbjct: 780 RLHGGKDSASPRYIFTMLSPLARLVFPSVDDNLLKY--NYDDNQRVEPEWYMPIIPTVLV 837

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GI  G A+ IP +N+ E+V     +++  +            P  P      G   
Sbjct: 838 NGAEGIGTGWASKIPNYNIREIVSNIHRMLNGDE----------PLPMLPNYKGFRGTIE 887

Query: 237 -IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKR 292
            + +      G + I   + IE          ++E+P +       E + E +    EK 
Sbjct: 888 HVMDNQFMNSGEVAIIDSTTIE----------ISELPVKSWTQTYKENVLEPMLNGTEKV 937

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADV 322
              I D R+       R VI++      + 
Sbjct: 938 PSLITDFREYHTDTTVRFVIKMTEEKLREA 967


>gi|183220091|ref|YP_001838087.1| DNA gyrase/topoisomerase subunit A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778513|gb|ABZ96811.1| DNA gyrase/topoisomerase, type IV, subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 461

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/516 (22%), Positives = 200/516 (38%), Gaps = 60/516 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+   + ++E+  K        D++ +    Y+  V   RAIP   DGLKPV RRIL+ M
Sbjct: 1   MSFGTMKNEEQYPKR----PFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNFG 118
                    ++ K  +++G  MG YHPHG+ +I DAL++MAQD++      L+ G+G FG
Sbjct: 57  WNSDARN--RHTKTVKVAGLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFG 113

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            V D +  A+ RYTE +L   A  L        +D+  NYD +  EP+    + P VL+N
Sbjct: 114 DVLDPNAIASPRYTEVKLSDFAKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPVVLLN 173

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
              GIA G    IP H L +V++  V  +                          G  G 
Sbjct: 174 NIQGIATGFRCFIPAHKLSDVIESQVTYLKTGKPK-------------KITPWYKGYGGE 220

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                   G+ V+      +K  G   ++ + + P   N+  ++  + +L+  K    + 
Sbjct: 221 VKLSKNDNGNTVMSTTFGFKKEDG---KLYLVDSPMNWNREKVVNYLDDLIERKD-NWLK 276

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D  D S +     +I  K    ++  + +L+   + + L     V  +  K   F    I
Sbjct: 277 DYVDHSSQTFKIELIAKKGEEPSEKEIKELFTKENNEVL--TINVITHEGKLRNFGPEEI 334

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +K F  FR+  ++RR K  L                        +I R S      +   
Sbjct: 335 IKRFCDFRKTHLIRRFK-RLAGLEKE------------------KIDRNSELIRFIKERW 375

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            ++       K+  D +  + +                 +  + + R+T        + +
Sbjct: 376 NEKVTGIKSKKEFEDKLKAAKFVYF------------EWLSSIPVYRMTLEEVRKCEDAI 423

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
                +  E   +     +L G +  EL  +K + D
Sbjct: 424 VEAKTKYTEYTTLQKDDKKLTGFMTDELDELKKKWD 459


>gi|190888608|gb|ACE95929.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888610|gb|ACE95930.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888614|gb|ACE95932.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888616|gb|ACE95933.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888624|gb|ACE95937.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888626|gb|ACE95938.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888628|gb|ACE95939.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888632|gb|ACE95941.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888634|gb|ACE95942.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888636|gb|ACE95943.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888640|gb|ACE95945.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888648|gb|ACE95949.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888650|gb|ACE95950.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888652|gb|ACE95951.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 106/151 (70%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA  +I  RA+PD+RDGLKPV RRIL+GM  +G+ +NK Y K A   GEV+GK+HPHG+
Sbjct: 1   RYAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           ++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYTE RL    + +L+++ K+T
Sbjct: 61  SSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKET 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           V+F  N+D S  EP +L +  PN+LVNG  G
Sbjct: 121 VNFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|295394240|gb|ADG03731.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae]
          Length = 151

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 107/151 (70%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G VMG +HPHG+++IYDA
Sbjct: 1   ITRRALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/515 (17%), Positives = 181/515 (35%), Gaps = 64/515 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  + I+D +    + +++   +  +IP + DG KP  R++L+   +  +   KK  
Sbjct: 662  DPTLNEIPISDFINKELILFSLADNVS-SIPSVLDGFKPGQRKVLYTCFKKNLTTEKKVA 720

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
              A    +    +H  G  A+   +  MAQ++  +  +  ++  G FG+    G   AA 
Sbjct: 721  NLAPAVSDYTAYHH--GEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRATGGKDAAAA 778

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L K A  +          +    D    EP       P VL+NG  GI  G +T
Sbjct: 779  RYIYTELNKIARKVFHPADDPLFRYVQE-DEKTVEPEWYLPVVPMVLINGAEGIGTGWST 837

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP  N  +VV+    ++++ ++D                    G TG          S 
Sbjct: 838  SIPPFNPLDVVNNIRHLLNDEEMDD-------------MHPWFRGWTGTMEKIE----SQ 880

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
              R    IE+       + +TE+P +   + + E +   +   EK    I D+ +E   +
Sbjct: 881  RYRMYGRIEQV--GPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIKDM-EEQHAE 937

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVA 363
              + +I+L             Y    L S  S+  +    Y+    +   +  ILK F  
Sbjct: 938  TIKFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHVHEILKDFYE 997

Query: 364  FREEVVVRRTKYLLNKARDRAH------------VLVGLAIAVANLDEVVRIIRFSPNPE 411
             R E   +R  Y+  + +  A             +   L +      +++  +     P 
Sbjct: 998  VRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIIDKSLIVTNKPKKQLISELEELGFPR 1057

Query: 412  TARRELMQRSWNASDIKDLIDLID----------------DSSYTIGSDGTMYLSEVQTR 455
              +           +++ +I   +                D   T+     ++ +     
Sbjct: 1058 INKEGKPHFGKIDEEVEAIISEDEDEDLEESEEATRKKDKDDESTVNGPEELFGTY---E 1114

Query: 456  AILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             +L L++  LT    + +  +      E++  L +
Sbjct: 1115 YLLGLKIWSLTKERYEKLLKQKQEKETELENLLKL 1149


>gi|167861164|gb|ACA05285.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|167861148|gb|ACA05277.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861150|gb|ACA05278.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861152|gb|ACA05279.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|190888606|gb|ACE95928.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888612|gb|ACE95931.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888618|gb|ACE95934.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888620|gb|ACE95935.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888622|gb|ACE95936.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888630|gb|ACE95940.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888638|gb|ACE95944.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888642|gb|ACE95946.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888644|gb|ACE95947.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888646|gb|ACE95948.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888654|gb|ACE95952.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/151 (52%), Positives = 105/151 (69%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA  +I  RA+PD+RDGLKPV RRIL+GM  +G+ +NK Y K A   GEV+GK+HPHG+
Sbjct: 1   RYAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            +IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYTE RL    + +L+++ K+T
Sbjct: 61  LSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKET 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           V+F  N+D S  EP +L +  PN+LVNG  G
Sbjct: 121 VNFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|61651648|dbj|BAD91163.1| GyrA protein [Campylobacter fetus subsp. fetus]
          Length = 142

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 106/142 (74%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  +
Sbjct: 1   VHRRILYAMNDLGVGSRSPYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQNFSMRVPAV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR 
Sbjct: 61  DGQGNFGSVDGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARV 120

Query: 172 PNVLVNGGGGIAVGMATNIPTH 193
           PN+L+NG  GIAVGMATNIP H
Sbjct: 121 PNLLLNGSSGIAVGMATNIPPH 142


>gi|297242233|gb|ADI24789.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 88/181 (48%), Positives = 126/181 (69%), Gaps = 2/181 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K  R   +  GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 2   KSGRAVRDGFGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVI 250
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGS+++
Sbjct: 122 PHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVIV 181

Query: 251 R 251
            
Sbjct: 182 C 182


>gi|1296985|emb|CAA64977.1| DNA gyrase subunit A [Sinorhizobium meliloti]
          Length = 148

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/148 (57%), Positives = 109/148 (73%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRI+  M +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S
Sbjct: 1   RDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R  +++GQGNFG++DGD  AA RYTE ++ + A  LL+    D VDFRP Y+   QEP 
Sbjct: 61  QRYPVVDGQGNFGNIDGDNAAAYRYTEAKMTEVAALLLEGSTLDAVDFRPTYNEEDQEPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL   +PN+L NG  GIAVGMATNIP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 182/488 (37%), Gaps = 52/488 (10%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALAR 99
           +IP L DGLKP  R++LF   +     NK+ VK A+++G V     + HG  ++   +  
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFKR---ANKREVKVAQLAGAVAEISAYHHGEQSLMGTIVN 369

Query: 100 MAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +AQD+    ++ LLL  GQ       G   A+ R    +L +    L      + + F  
Sbjct: 370 LAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFLY 429

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
             +   +         P VLVNG  G   G +TNIP +N  E+V     +I         
Sbjct: 430 EENQRIEPEWYCP-IIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAGEPQ---- 484

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIVVTEI 271
                                +   Y   RG I+     R   + E +  D   I +TE+
Sbjct: 485 -------------------KALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEITEL 525

Query: 272 PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVI----L 324
           P +       EK+ E +    +K+   I D ++       + V++L  G   ++     L
Sbjct: 526 PIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQDL 585

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           +Q+++  ++ +   + +    G+     +   I + F   R+E  V+R +YLL   + ++
Sbjct: 586 HQVFKLQAVINTTCMVLFDAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQAQS 645

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
             L   A  +        ++            L++  ++A  +K   +  D     +   
Sbjct: 646 KRLTNQARFILATINNKIVLENKKKTAIV-DVLIKMKFDADPVKKWKE--DQKLKELRES 702

Query: 445 GTMYLSE--VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
           G + L E  +   A+ E           +   ++ + L         I  S      +IK
Sbjct: 703 GEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLV----GLALIKLSEEEKNKLIK 758

Query: 503 QELLSVKD 510
           +    + +
Sbjct: 759 ESEEKMAE 766


>gi|297242249|gb|ADI24797.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 87/178 (48%), Positives = 122/178 (68%), Gaps = 2/178 (1%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GK  PHG++  Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 4   SARTVGDVLGKLDPHGDSGCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 63

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP 
Sbjct: 64  SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 123

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIV 249
           HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRG   
Sbjct: 124 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGHT 181


>gi|294992573|gb|ADF57413.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|289805577|ref|ZP_06536206.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 203

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 120/251 (47%), Gaps = 59/251 (23%)

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  
Sbjct: 12  EVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTA 68

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R    R +
Sbjct: 69  LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG-RTA 127

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D+V+S+ I     A                                   
Sbjct: 128 TGVRGIKLAGDDKVVSLIIPRGEGA----------------------------------- 152

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++
Sbjct: 153 ------------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSV 192

Query: 842 VAVFPVNDNDQ 852
           V    V+D DQ
Sbjct: 193 VGAVQVDDCDQ 203



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +   +  G  K+T+  +F     +G  I A +++  +E   L+ V   + +D++
Sbjct: 49  YEEGVNVFMATASGTVKKTALTEFSRPRSAG--IIAVNLNDGDE---LIGVDLTSGSDEV 103

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 104 MLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 144



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 5/189 (2%)

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             A R + G   ++L   +    +  +L      +    +M   S   +  +        
Sbjct: 17  PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPR 76

Query: 775 LKNDSSVEGNISEERC-QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                +V  N  +E    +L      ++  S  G   R      R   R+  G+R   ++
Sbjct: 77  SAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLA 136

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVV 892
             ++   +V++        I+ V+  G   R   +E    SRAT+GV+    T ++  VV
Sbjct: 137 GDDK---VVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVV 193

Query: 893 SVERIRESE 901
              ++ + +
Sbjct: 194 GAVQVDDCD 202



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 68/177 (38%), Gaps = 14/177 (7%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +           V   +  G VK+  L+ +   R    G   V + D D +  + 
Sbjct: 38  ERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNLNDGDELIGVD 95

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + S    V+ FS+ G V + K   +      A G   +  + L   +++ +++  P  E 
Sbjct: 96  LTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI-IPRGEG 151

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQEND 695
           +     ++  T++G  +R    ++   +R+  G I++K+      ++        + 
Sbjct: 152 A-----ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQ 203


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 149/399 (37%), Gaps = 36/399 (9%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            S+   D +    + ++   ++ R+IP + DG KP  R++LF  ++  ++ + K  +    
Sbjct: 685  SLRYLDFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSDTKVAQFVGY 743

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
              E    +H  G  ++   +  MAQD+    +L LL   GQ       G   A+ RY   
Sbjct: 744  VSEHSAYHH--GEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYT 801

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            RL K    +      D +++    +G   EP   C   P VLVNG  GI  G +TN+ ++
Sbjct: 802  RLSKYTRTIFHPDDDDVLEYL-TEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSY 860

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            +  E++               AL+  +   D        G TG            V +  
Sbjct: 861  DPREIIHLLR-----------ALIRGVELHD--IHPWYRGFTGSVERNDKNGYDFVGKVR 907

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                  + D   + +TE+P +       + +  LV    ++                   
Sbjct: 908  -----MASDDRTVDITELPVKTWTQNY-KDLDTLVVSVILLG-----RYHTEHSVHFKCT 956

Query: 314  LKRGASADVI----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            L+  A+  V+    L + ++  S  S  ++ +   +G      +++ I+K F   R ++ 
Sbjct: 957  LQNEAAKSVVDSLGLEKAFKLRSAFSTTNMVLFDRDGKIRRYDSVLDIIKDFADLRLDMY 1016

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
            V+R   L+ K      +L      V  +     + +   
Sbjct: 1017 VKRKDSLIAKLTKEILILSNKCRFVMMVINGEIVFQKKK 1055


>gi|117950173|gb|ABK58470.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 148

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 111/145 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+L
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVD 200
           VNG  GIAVGMATNIP HNL EV++
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTEVIN 145


>gi|3411098|gb|AAC31148.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411100|gb|AAC31149.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG++++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYGAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|297242277|gb|ADI24811.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/174 (50%), Positives = 125/174 (71%), Gaps = 2/174 (1%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           +V GK+HP G++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K 
Sbjct: 9   DVFGKFHPDGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKI 68

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+
Sbjct: 69  SEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEI 128

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIR 251
            D  V ++DNP   LD ++EI++GPDFPT A I+  ++ I+  Y  GRGS+++R
Sbjct: 129 ADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVIVR 182


>gi|167861154|gb|ACA05280.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|321116500|dbj|BAJ72202.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 160

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 82/160 (51%), Positives = 110/160 (68%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSS 160


>gi|294992569|gb|ADF57411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 110/133 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|33469556|gb|AAQ19803.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 153

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 110/152 (72%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A
Sbjct: 1   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 61  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            F  N+D + +EP VL A +PN+LVNG  GI+
Sbjct: 121 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGIS 152


>gi|295394214|gb|ADG03718.1| DNA topoisomerase IV subunit A [Streptococcus australis]
 gi|295394230|gb|ADG03726.1| DNA topoisomerase IV subunit A [Streptococcus parasanguinis]
          Length = 151

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|284803671|emb|CBJ21241.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 142

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 112/142 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVL 175
           + N DGS +EP VL +R+P +L
Sbjct: 121 QDNSDGSKREPAVLPSRFPKML 142


>gi|260100978|gb|ACX31654.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 128

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/128 (62%), Positives = 104/128 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRP 155
           K+TVDF  
Sbjct: 121 KETVDFVD 128


>gi|294992575|gb|ADF57414.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDF 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|167861162|gb|ACA05284.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 114/148 (77%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HN+ EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 196/502 (39%), Gaps = 38/502 (7%)

Query: 5    IISSDEEE---EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++SSD  +   +  I  +S  D +    + Y+      R+IP + DGLKP  R+IL+   
Sbjct: 754  LLSSDTTQLSVDHSIKELSFDDFINKELIHYSWAA-NHRSIPSVMDGLKPGQRKILYAAF 812

Query: 62   QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIE--GQGNF 117
            +  +    K  + +    E    +H  G  ++   + +MAQD+  S  + L+   GQ   
Sbjct: 813  KRKLTSEIKVAQFSGYVAEHTAYHH--GEQSLSSTIVKMAQDFVGSNNIPLLTSGGQFGT 870

Query: 118  GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                GD  A+ RY   +L      + +DL  D + +    +G   +P       P +LVN
Sbjct: 871  RLQGGDDSASPRYIFTKLNSITRLIFNDLDDDLLKYL-EEEGEMIQPNYYVPILPMILVN 929

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG- 236
            G  GI VGM+ ++P ++  +++D  + +++N       +  ++            G TG 
Sbjct: 930  GSDGIGVGMSNSVPLYSPIDLIDYLLNLLNNQ----KQMKALVP--------WYRGFTGT 977

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
            I        GS    GV      +     +V++++P           + +LV +  I   
Sbjct: 978  IVRGSNAVNGSFKTSGV-----ITRVGRTLVISDLPIGKWTVDYKVVLNDLVEKDFIKSY 1032

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTL 354
             D   E+           +     ++  N+L     L S    N++    NG   +  + 
Sbjct: 1033 HDGNTENSVSFTIHFTNDQLEEIDEMTDNELIDKFKLNSSLHSNLMLFDTNGNIKKYEST 1092

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              I+  F  +R ++ V R K L ++ + +      + I   +L    ++       +   
Sbjct: 1093 EEIIGEFFQYRRKLYVDRKKMLQDRLKKQIDKF-NVTIQFISLIASGKVKLGGKTKQLII 1151

Query: 415  RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             EL +  +  +  ++  ++ +     + +   + +++ +   + +  L++ T        
Sbjct: 1152 EELHKNKFKLAPNQNQEEMFNY----LFNLPILDMTQEKIDTLTQ-NLSKRTEEFNFIQS 1206

Query: 475  NELNSLGI-EIKECLDILSSRS 495
             E + L   ++++  D L    
Sbjct: 1207 QESDQLWKTDLQQLKDFLLKDK 1228


>gi|299779202|ref|YP_003734396.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
 gi|298105931|gb|ADI55575.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
          Length = 460

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 156/394 (39%), Gaps = 31/394 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +   T   +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ 
Sbjct: 18  DDAFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFH 77

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A I+G V    + HG  +  +A A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 78  KLASIAGGVADLGYHHGEGSAQEAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASRYIF 137

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+      +  D     V      D   + P       P VL+NG  GIA G ATNI  
Sbjct: 138 ARIGSNFAKVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGVSGIATGYATNILP 193

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H+   V    + V+    +        +  P+F    V               GS  IRG
Sbjct: 194 HSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRGEVV-----------EIEPGSYEIRG 238

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                     R Q+ +TEIPY+ ++   + KI + + +K  +   D  DE+   G++V I
Sbjct: 239 TYKF----TSRTQMHITEIPYKYDRETYVAKILDPLEDKGYITYDDDCDENGF-GFKVKI 293

Query: 313 ELKRGASADVILNQ--LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEV 368
             +     +       + +   L    S N+  +N  G        + +++ FV  R+  
Sbjct: 294 RKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDAVELIRDFVEVRKTF 353

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           V +R      K  +              + +V+ 
Sbjct: 354 VQKRID---GKIIETEEAFKLALAKATFIKDVID 384


>gi|3411096|gb|AAC31147.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|295394232|gb|ADG03727.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|189910211|ref|YP_001961766.1| DNA topoisomerase subunit A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774887|gb|ABZ93188.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 456

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 114/506 (22%), Positives = 195/506 (38%), Gaps = 56/506 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+        D++ +    Y+  V   RAIP   DGLKPV RRIL+ M         +
Sbjct: 2   KNEEQYPKRPFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAMWNSDARN--R 59

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNFGSV-DGDPPAA 127
           + K  +++G  MG YHPHG+ +I DAL++MAQD++      L+ G+G FG V D +  A+
Sbjct: 60  HTKTVKVAGLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIAS 118

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L   A  L        +D+  NYD +  EP+    + P VL+N   GIA G  
Sbjct: 119 PRYTEVKLSDFAKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPVVLLNNIQGIATGFR 178

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
             IP H L +V++  V  +                          G  G         G+
Sbjct: 179 CFIPAHKLSDVIESQVTYLKTGKPK-------------KITPWYKGYGGEVKLSKNDNGN 225

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            V+      +K  G   ++ + + P   N+  ++  + +L+  K    + D  D S +  
Sbjct: 226 TVMSTTFGFKKEDG---KLYLVDSPMNWNREKVVNYLDDLIERKD-NWLKDYVDHSSQTF 281

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
              +I  K    ++  + +L+   + + L     V  +  K   F    I+K F  FR+ 
Sbjct: 282 KIELIAKKGEEPSEKEIKELFTKENNEVL--TINVITHEGKLRNFGPEEIIKRFCDFRKT 339

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            ++RR K  L                        +I R S      +    ++       
Sbjct: 340 HLIRRFK-RLAGLEKE------------------KIDRNSELIRFIKERWNEKVTGIKSK 380

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K+  D +  + +                 +  + + R+T        + +     +  E 
Sbjct: 381 KEFEDKLKAAKFVYF------------EWLSSIPVYRMTLEEVRKCEDAIVEAKTKYTEY 428

Query: 488 LDILSSRSRLLGIIKQELLSVKDELD 513
             +     +L G +  EL  +K + D
Sbjct: 429 TTLQKDDKKLTGFMTDELDELKKKWD 454


>gi|294992577|gb|ADF57415.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/133 (61%), Positives = 110/133 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           +F+ NYDGS +EP
Sbjct: 121 NFQDNYDGSEREP 133


>gi|169787136|gb|ACA80007.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYWMK 163


>gi|167861158|gb|ACA05282.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GASGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|260100980|gb|ACX31655.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Panama]
          Length = 128

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 81/128 (63%), Positives = 105/128 (82%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120

Query: 147 GKDTVDFR 154
            K+TVDF 
Sbjct: 121 EKETVDFV 128


>gi|3411108|gb|AAC31153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 115/165 (69%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|169787188|gb|ACA80033.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYWMK 163


>gi|295394212|gb|ADG03717.1| DNA topoisomerase IV subunit A [Streptococcus anginosus]
          Length = 151

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 110/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKDTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|169787144|gb|ACA80011.1| GyrA [Brenneria quercina]
 gi|169787146|gb|ACA80012.1| GyrA [Brenneria quercina]
 gi|169787148|gb|ACA80013.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 64  EELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 79  TEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|3411102|gb|AAC31150.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|3411110|gb|AAC31154.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411112|gb|AAC31155.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411114|gb|AAC31156.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 115/165 (69%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|295394220|gb|ADG03721.1| DNA topoisomerase IV subunit A [Streptococcus infantis]
 gi|295394224|gb|ADG03723.1| DNA topoisomerase IV subunit A [Streptococcus mitis]
 gi|295394228|gb|ADG03725.1| DNA topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
          Length = 151

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|295394234|gb|ADG03728.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 108/151 (71%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|294992571|gb|ADF57412.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDY 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|1296444|emb|CAA64979.1| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 148

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRI+  M +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S
Sbjct: 1   RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R  +++GQGNFG++DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPV
Sbjct: 61  QRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL   +PN+L NG  GIAVGMATNIP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 99/499 (19%), Positives = 186/499 (37%), Gaps = 45/499 (9%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +      +  + ++S  D +    + +++     R+IP + DGLKP  R++LF   +  +
Sbjct: 681  LEPGTFVDYAVDAMSYGDFVNKELILFSV-ADNQRSIPSVVDGLKPSQRKVLFACFKRKL 739

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
            +   K  + A    E    +H  G  ++   +  MAQD+  S  + L+   G FG+  + 
Sbjct: 740  KKEIKVAQLAGYVSEHAAYHH--GEMSLTGTIVGMAQDFVGSNNVNLLTPAGQFGTRIMG 797

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   A+ RY   +L+  A  +        +D+  + DG   EP       P  L NG  G
Sbjct: 798  GKDAASSRYIFTKLEAVARKVFHPDDDFVLDYLED-DGQSIEPTYYVPVLPFALCNGADG 856

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G AT++P +    ++     +ID  D+    L    RG     G  I+ + G KNA 
Sbjct: 857  IGTGWATSVPNYAPRALIGVLRRMIDA-DVGAADLAPHYRG----FGGDIVAKGG-KNA- 909

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                G+  + G +    T  D   ++V E+P+  +    LE +     +K    + D ++
Sbjct: 910  ----GAFAVLGRA----TRLDDVTVLVDELPWTHDYKQWLE-VQLSGDDKTKAWVKDFKE 960

Query: 302  ESDRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKP----ERFTL 354
                      + + +G     A+  L  L +   L+   + + +           +    
Sbjct: 961  NHTDTRVSFTVTVTKGEDLDDAEAALGGLEKKFKLEGSLATSNMNFFDDTGLVIDKYDAP 1020

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS------- 407
              ++KAF   R     +R  +L+   R R  +L      V ++     +++         
Sbjct: 1021 FDVIKAFYKVRVATYAKRKAHLVKAKRARVSLLRNKVRFVLSVLSGDLVVQNRKRAELLA 1080

Query: 408  ---PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILEL 460
                +   A      +    +   D  D         G+      S+ Q       +L +
Sbjct: 1081 QLVDDGYDAVYNAAAKKKTPAKADDDGDASGSDGDDDGAGAAAGSSDAQLAKGYDYLLSM 1140

Query: 461  RLARLTGLGRDDIRNELNS 479
            ++  LT    D +R EL  
Sbjct: 1141 KIWSLTMERVDALRAELKD 1159


>gi|261599203|gb|ACX85664.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/154 (53%), Positives = 112/154 (72%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ 
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 67  RMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            + +EP VL A + N+LVNG  GI+ G AT+IP+
Sbjct: 127 DTEKEPTVLPAAFSNLLVNGSTGISAGYATDIPS 160


>gi|167861166|gb|ACA05286.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HN+ EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|148985115|ref|ZP_01818354.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922560|gb|EDK73678.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 141

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/138 (55%), Positives = 111/138 (80%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKD 149
           E R+ K A  +L D+ K 
Sbjct: 122 EARMSKIALEMLRDINKK 139


>gi|295394222|gb|ADG03722.1| DNA topoisomerase IV subunit A [Streptococcus intermedius]
          Length = 151

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 110/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLAEIAGYLLQDIEKDTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/543 (17%), Positives = 201/543 (37%), Gaps = 66/543 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + I D +    + +++     R+IP L DGLKP  R+++FG  +  +   K  +
Sbjct: 671  DPHLTEIQIGDFINKELILFSL-ADNLRSIPHLLDGLKPSQRKVIFGSFKRNIM--KTEI 727

Query: 73   KCARISGEVM-GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K   ++  V     + H   ++   +  +AQD+  +  + L+  +G FG+    G   AA
Sbjct: 728  KVQELAAYVSGQTAYHHTEQSLVQTIVSLAQDFVGANNIYLLMPRGAFGTRATGGKDAAA 787

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L   +  + + L    + +  + + + +    + A  P VLVNG  GI  G +
Sbjct: 788  ARYIFTQLNSISKHVFNPLDNPLLTYVQDDEKTVEPEWYVPA-LPMVLVNGAEGIGTGWS 846

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            T+IP  N  ++V+    ++   + D                    G  G        R  
Sbjct: 847  TSIPPFNPIDIVNNLRKLMRGDEPDD-------------MAPWFRGWNGTMQKIDAQRYR 893

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK--IAELVREKRIVDIADLRDESDR 305
            I  R    IE+       + +TE+P +     + E   +A    E+    + D++++   
Sbjct: 894  IFGR----IEQV--GENTVEITELPARTWTTTIKEHLLLALSGNERTKPWVKDMQEQHGA 947

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVA 363
                VV            +    R+  + ++   NMV    +    +   +  IL  F  
Sbjct: 948  TIKFVVTLTPEEMERTRKIGFYERFKLISTVSLSNMVLFDAHNKIKKYNDVKEILTDFFY 1007

Query: 364  FREEVVVRRTKYLLNKARDRAH-VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R E   +R  Y++ + + +   +   +      +DE +R+ + + +      E +    
Sbjct: 1008 VRLEFYQKRKDYMIERLQWQLEKLSFQVKFIKMIIDEELRVTKKARSVLMKELESLGFPR 1067

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSE---VQT-------------------RAILEL 460
              ++ K   + ID+    + +      +E    Q                      +L +
Sbjct: 1068 VDAEGKPHFEKIDEDLEEMDASDPEEFAEELDEQGGEVADENVVVGPLEKFGTYEYLLGM 1127

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR------LLGIIKQELLSVKDELDT 514
            ++  LT    + +  E  +      E  ++L   ++      L   +++    +K   DT
Sbjct: 1128 KIWSLTKEKYERLLREKQNKEA---ELQELLGKSAKDLWNADLDMFVREYEEFIK--YDT 1182

Query: 515  PRR 517
              R
Sbjct: 1183 EVR 1185


>gi|3411104|gb|AAC31151.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411106|gb|AAC31152.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|169787134|gb|ACA80006.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSSDRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|46406038|gb|AAS93684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 142

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/142 (60%), Positives = 108/142 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+L
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 176 VNGGGGIAVGMATNIPTHNLGE 197
           VNG  GIAVGMATNIP HNL E
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTE 142


>gi|116327081|ref|YP_796801.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332262|ref|YP_801980.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119825|gb|ABJ77868.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125951|gb|ABJ77222.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 190/513 (37%), Gaps = 60/513 (11%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+  + +         D++ +    Y+  V   RAIP   DGLKPV RRIL+ M      
Sbjct: 4   SNPPKLKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMWNSDAR 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD--WSLRLLLIEGQGNFGSV-DGD 123
              +Y K  +++G  MG YHPHG+ +I DAL++MAQD  ++  + L+ G+G FG V D  
Sbjct: 64  N--RYTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPS 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             A+ RYTE +L      L        +D+  NYD +  EP+    + P VL+N   GIA
Sbjct: 121 AIASPRYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
            G    IP H L ++V   +  +                             G      T
Sbjct: 181 TGFRCFIPGHRLADIVKSQINYLKTKKP-------------LSLKPWYKDFNGEVKMAET 227

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
             G+I +      +      + + +T+ P   N+  ++  + + + E++   + +  D S
Sbjct: 228 ETGNITMSTTFAFKWEG---DILYLTDSPMNWNREKVI-SLLDDILERKDSWLKEYVDYS 283

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            +     +   K    +   +  L+    +Q+L     V     K + F    I+K F  
Sbjct: 284 SQTFRIELQYKKGEKPSQKEIMALFNKEDIQTL--AMNVITYDGKLKNFKPEEIIKRFCD 341

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLA--IAVANLDEVVRIIRFSPNPETARRELMQRS 421
           FR+  ++RR K L     ++      L   I     ++V+ I       +  +    +  
Sbjct: 342 FRKTHLIRRFKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFEDKLKASKFKYF 401

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                              +  + + R+T          +    
Sbjct: 402 ---------------------------------EWLSTIPVYRMTIEEVKKCEEAIIEAK 428

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             +     ++    +L   +  EL  ++++ D 
Sbjct: 429 TTLARYQGLVKEDKKLTDYMITELNELQNKWDK 461


>gi|169787158|gb|ACA80018.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSDRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 64  EELELIRDQFGDKRRTEITANSADINMEDLINQEDVVVTLSHQGYVKYQPLTEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINMEDLINQEDVVVTLSHQGYVKYQPLTEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|169787168|gb|ACA80023.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILT 802
           A   E +  +        +I  + E I +  +D     +  N ++   ++L  +E  ++T
Sbjct: 43  AQIAELLHILNSPERLMEVIREELEAINTQYSDERRTEITANTADINIEDLINQEDVVVT 102

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 103 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 159

Query: 863 IRVP 866
             + 
Sbjct: 160 YWMK 163


>gi|226451953|gb|ACO59156.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451959|gb|ACO59159.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/137 (64%), Positives = 108/137 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVD 200
           VGMATNIP HNL EV+D
Sbjct: 121 VGMATNIPPHNLTEVID 137


>gi|295394216|gb|ADG03719.1| DNA topoisomerase IV subunit A [Streptococcus cristatus]
 gi|295394218|gb|ADG03720.1| DNA topoisomerase IV subunit A [Streptococcus gordonii]
 gi|295394238|gb|ADG03730.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK1]
          Length = 151

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 110/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLQDIEKDTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|219815939|gb|ACL37056.1| GyrA [Salmonella enterica]
          Length = 130

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 106/130 (81%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH 
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 142 LLDDLGKDTV 151
           L+ DL K+TV
Sbjct: 121 LMADLEKETV 130


>gi|89515137|gb|ABD75398.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515139|gb|ABD75399.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515145|gb|ABD75402.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515147|gb|ABD75403.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515149|gb|ABD75404.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 140/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I +DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINADGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGMA 176



 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINADGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           S   +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 SIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|169787194|gb|ACA80036.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMKVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 79  TEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|126797770|gb|ABO27404.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +++DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKDELGAIRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 38.8 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 3/146 (2%)

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +       ++        G        A  +   R            GD++     +   
Sbjct: 33  VDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDEL---NKIGEE 89

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             DY + +     +    +   G   +       + +     +   ++L  +E  ++TVS
Sbjct: 90  IKDYLDILSSRLRIMQIVKDELGAIRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVS 149

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRAT 830
             G+ KR     +R   R GKG    
Sbjct: 150 HLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|3411074|gb|AAC31135.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411076|gb|AAC31136.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411078|gb|AAC31137.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 100/130 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAA 139
           YTE R+ K  
Sbjct: 123 YTEARMTKIT 132


>gi|219815941|gb|ACL37057.1| GyrA [Salmonella enterica]
          Length = 122

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/120 (62%), Positives = 99/120 (82%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120


>gi|169787176|gb|ACA80027.1| GyrA [Pectobacterium atrosepticum SCRI1043]
          Length = 163

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILNSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYSMK 163


>gi|169787138|gb|ACA80008.1| GyrA [Erwinia rhapontici]
          Length = 163

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYSMK 163


>gi|89515129|gb|ABD75394.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515131|gb|ABD75395.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515133|gb|ABD75396.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINVDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R  +      +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINVDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 AIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|320540723|ref|ZP_08040331.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029214|gb|EFW11285.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 162

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 97/162 (59%), Positives = 122/162 (75%), Gaps = 1/162 (0%)

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG  GIAVGMATNIP HNL EV++GC+A
Sbjct: 1   DLEKETVDFVPNYDGTEQIPAVMPAKIPNLLINGASGIAVGMATNIPPHNLSEVINGCLA 60

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDR 263
            ID+ +I ++ LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + +E      R
Sbjct: 61  YIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAEVESDAKTGR 120

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           E I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+
Sbjct: 121 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 162


>gi|169787192|gb|ACA80035.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 79  TEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|89515135|gb|ABD75397.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 38.4 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKND------SSVEGNISEERCQELKLKEQFIL 801
            +E   Y+  +S++ R+++   +E+ +++++      + +     +   ++L  +E  ++
Sbjct: 87  GEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 146

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           TVS  G+ KR     +R   R GKG    
Sbjct: 147 TVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|89515127|gb|ABD75393.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797766|gb|ABO27402.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797768|gb|ABO27403.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKDELGAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 38.8 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 3/146 (2%)

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +       ++        G        A  +   R            GD++     +   
Sbjct: 33  VDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDEL---NKIGEE 89

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             DY + +     +    +   G   +       + +     +   ++L  +E  ++TVS
Sbjct: 90  IKDYLDILSSRLRIMQIVKDELGAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVS 149

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRAT 830
             G+ KR     +R   R GKG    
Sbjct: 150 HLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|89515115|gb|ABD75387.1| DNA gyrase subunit A [Sinorhizobium arboris LMG 14919]
 gi|126797744|gb|ABO27391.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVEALIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMKIVKDELTAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.5 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R    A    +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+T+++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 KIVKDELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 97/512 (18%), Positives = 193/512 (37%), Gaps = 60/512 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  ++  D +    + Y+    L R+IP L DGLKP  R+ILF   +  +    K  
Sbjct: 781  DHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVS 839

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            + +    E    +H  G  ++   + +MA ++  S  L L+   G FG+    G   A+ 
Sbjct: 840  QLSGYVAEQTSYHH--GEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASA 897

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L+       ++L    +++    +G   +P       P +LVNG  GI VGM+T
Sbjct: 898  RYI-LQLEPVGTLPFNELDDPLLNYL-EEEGESIQPDYYIPIIPMLLVNGSEGIGVGMST 955

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            +IP  +  +++D  +  ++N       L ++I            G  G  +     R + 
Sbjct: 956  SIPLFSPIDIIDQLMLRLNNQVA----LKKLIP--------WYRGFKGTIS---PDRHTY 1000

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
               GV            + +TE+P     +   E + +L+ +  I    +   E+     
Sbjct: 1001 RTNGV-----IKLVGRNLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQESNTENSVHFT 1055

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFRE 366
             ++   +     D+  N+L +   L +  + ++   +      +  ++  I+  F   R 
Sbjct: 1056 ILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRL 1115

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            +   +R +YLL            L   +  L   ++ +        A  +L  +  +  D
Sbjct: 1116 QFYGKRREYLLK----------SLDNQIKRLTTTIQFLE-----VIASGKLKIQGRSKQD 1160

Query: 427  IKDLIDLIDDSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            +   ++  +   +   G+        + + +IL+     +T    D++ N    L     
Sbjct: 1161 LIKELESGEIVGFENFGTHPPEVYQHLFSLSILD-----ITKERIDNLTN---QLTKRKS 1212

Query: 486  ECLDILSSRSR-----LLGIIKQELLSVKDEL 512
            E   I SS  +      L  +K+ L     E 
Sbjct: 1213 EHQSISSSDPKSLWTADLQQLKEYLEKSDKEF 1244


>gi|169787190|gb|ACA80034.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 105/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L ILSS  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILSSSERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|169787174|gb|ACA80026.1| GyrA [Pectobacterium wasabiae]
          Length = 163

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAIDTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           + +    R      +   S +  + +  N ++   ++L  +E  ++T+S +G+ K     
Sbjct: 56  ERLMEVIREELEAIDTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLS 115

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           ++    R G+G  A  + + + I  L+     N +D I+  S +G L  + 
Sbjct: 116 EYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|149393056|gb|ABR26590.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393058|gb|ABR26591.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393060|gb|ABR26592.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393062|gb|ABR26593.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
          Length = 176

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           S   +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 SIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|169787150|gb|ACA80014.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL++  RL+ +I+
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLYILANPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  +K++    RRT I     D+  ED I +ED+V T+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEVIKEQYRDERRTEITHNTADINIEDLICQEDVVATLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 46.5 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           + +    R      +E    +  + +  N ++   ++L  +E  + T+S +G+ K     
Sbjct: 56  ERLMEVIREELEVIKEQYRDERRTEITHNTADINIEDLICQEDVVATLSHQGYVKYQPLS 115

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           D+    R G+G  A  + + + I  L+     N +D I+  S +G L  + 
Sbjct: 116 DYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|169787154|gb|ACA80016.1| GyrA [Brenneria rubrifaciens]
 gi|169787160|gb|ACA80019.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787162|gb|ACA80020.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787178|gb|ACA80028.1| GyrA [Pectobacterium atrosepticum]
 gi|169787180|gb|ACA80029.1| GyrA [Pectobacterium carotovorum subsp. odoriferum]
 gi|169787182|gb|ACA80030.1| GyrA [Erwinia chrysanthemi]
 gi|169787184|gb|ACA80031.1| GyrA [Erwinia chrysanthemi]
          Length = 163

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYSMK 163


>gi|169787156|gb|ACA80017.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYSMK 163


>gi|169787166|gb|ACA80022.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAINTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R G+G  A  + + + I
Sbjct: 79  TEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|3411080|gb|AAC31138.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411082|gb|AAC31139.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411084|gb|AAC31140.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411086|gb|AAC31141.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411088|gb|AAC31142.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411090|gb|AAC31143.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411092|gb|AAC31144.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 99/130 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAA 139
           YTE R+ K  
Sbjct: 123 YTEARMTKIT 132


>gi|89515141|gb|ABD75400.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515143|gb|ABD75401.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 140/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I +DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINADGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD++ +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEVGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGMA 176



 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    +    +   +E   Y+  +S++ R++
Sbjct: 45  HRINADGTYNLSEEQARAILDLRLQRLTALGRDEVGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           S   +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 SIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|226451971|gb|ACO59165.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/137 (64%), Positives = 107/137 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVD 200
           VGMATNIP HNL EV+D
Sbjct: 121 VGMATNIPPHNLTEVID 137


>gi|89515113|gb|ABD75386.1| DNA gyrase subunit A [Sinorhizobium fredii]
 gi|126797738|gb|ABO27388.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
          Length = 176

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 138/174 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175



 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 166/464 (35%), Gaps = 67/464 (14%)

Query: 9    DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            D        ++   D +    + ++      R+IP+L DGLKP  R++LF   +  +   
Sbjct: 800  DYSINNQCRNLRYFDFIHKELVLFSRY-DTTRSIPNLLDGLKPGQRKVLFATFKKKLNNE 858

Query: 69   KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDP 124
             K  + A    E    +H  G +++   +  MAQ++  S  L L+E  G FGS    G  
Sbjct: 859  LKVAQLAGYVAEHSAYHH--GESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKD 916

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             +A RY   +L K   ++  +     + +  + DG   EP+      P +LVNG  GI  
Sbjct: 917  ASAARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGT 975

Query: 185  GMATNIPTHNLGEVVDGC-VAVIDNPDIDLDALMEIIRGPDFP-----------TGAVIL 232
            G ++++P +N  +++      +     + +    +  +G  FP            G    
Sbjct: 976  GWSSSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKSFKGKIFPIKQKSKKNSASNGGGNN 1035

Query: 233  GRTG-----------------------------IKNAYATGRGSIVI------RGVSHIE 257
             R                               I+     G G I           +   
Sbjct: 1036 NRKKTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANYETFGN 1095

Query: 258  KTSGDREQIVVTEIPYQVNKAAMLEKI------AELVREKRIV--DIADLRDESDRQGYR 309
                + E +V+TE+P +       E +      A       I    I D RD S  +   
Sbjct: 1096 WYKKNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSSHESVH 1155

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFRE 366
            + + ++        +  + +   L+S  S + + L  +        T + ILK F+  R 
Sbjct: 1156 ITVRMRPEKLQQAEMEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEFIPIRL 1215

Query: 367  EVVVRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            E+  +R  YLL+K   ++  +   +      +  V+ +   S  
Sbjct: 1216 EMYEKRKNYLLSKLNYEKCLLEQKILFLKLVIQGVIGLSNKSKE 1259


>gi|2921173|gb|AAC04690.1| topoisomerase IV subunit C [Mycoplasma hominis ATCC 23114]
          Length = 145

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 102/145 (70%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M  + ++ ++ + K ARI G+V+G+YHPHG+++IY+AL RMAQDW  
Sbjct: 1   DGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKS 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
              LIE  GN GS+D DP AA RYTE RL+K +  +L DL +  V   PN+D S  EP+V
Sbjct: 61  NFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATNIP 191
           L A +PN+LVNG  GIA G AT IP
Sbjct: 121 LPALFPNLLVNGAKGIAAGFATEIP 145


>gi|89515111|gb|ABD75385.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
 gi|126797784|gb|ABO27411.1| DNA gyrase subunit A [Sinorhizobium sp. GRX8]
          Length = 176

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 111/174 (63%), Positives = 138/174 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 122 RRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175



 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|126797782|gb|ABO27410.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 176

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 110/174 (63%), Positives = 138/174 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175



 Score = 38.8 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKND------SSVEGNISEERCQELKLKEQFIL 801
            +E   Y++ +S++ R++    +E+ +++++      + +     +   ++L  +E  ++
Sbjct: 87  GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 146

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           TVS  G+ KR     +R   R GKG    
Sbjct: 147 TVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|126797746|gb|ABO27392.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMKIVKDELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 38.8 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R    A    +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 KIVKDELIAVRDEFGTPRRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|126797808|gb|ABO27423.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 176

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 111/174 (63%), Positives = 138/174 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W + D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRTAPDPQTAREQLMERRWPSHDVAPLIKLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R+  I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIADELNKIGAEIVDFLDILSSRARIQQIVKDELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT + EG  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+
Sbjct: 122 RRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175



 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +    E + ++  +S++ R+ 
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIVDFLDILSSRARIQ 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +    ++   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELIAVRDEFGTPRRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|226451955|gb|ACO59157.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451957|gb|ACO59158.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451961|gb|ACO59160.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451963|gb|ACO59161.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451965|gb|ACO59162.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451967|gb|ACO59163.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451969|gb|ACO59164.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451973|gb|ACO59166.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451975|gb|ACO59167.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451977|gb|ACO59168.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451979|gb|ACO59169.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451981|gb|ACO59170.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451983|gb|ACO59171.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451985|gb|ACO59172.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451987|gb|ACO59173.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451989|gb|ACO59174.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451991|gb|ACO59175.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451993|gb|ACO59176.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451995|gb|ACO59177.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451997|gb|ACO59178.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 88/137 (64%), Positives = 107/137 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVD 200
           VGMATNIP HNL EV+D
Sbjct: 121 VGMATNIPPHNLTEVID 137


>gi|169787164|gb|ACA80021.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     ++    R GKG  A  + + + I
Sbjct: 79  TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G +  + 
Sbjct: 139 DRLLVA---NTHDHILCFSSRGRVYSMK 163


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 97/532 (18%), Positives = 190/532 (35%), Gaps = 70/532 (13%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             +  ++ +    + +++     R+IP L DGLKP  R++LF   +  ++   K V+    
Sbjct: 652  ELGYSEFIHKELIHFSM-ADNIRSIPSLMDGLKPGQRKVLFACFKRNLKQEIKVVQLGGY 710

Query: 78   SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTEC 133
              E    +H  G+ ++   +  MAQ++  S  + L+  +G FGS  + G   A+ RY   
Sbjct: 711  IAEHSAYHH--GDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYIST 768

Query: 134  RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
             L K   ++  +     + +  + DG   EP       P  LVNG  GI  G +T+I  +
Sbjct: 769  ALNKITRYIFPEQDDHLLKYLED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNY 827

Query: 194  NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            N  ++V      ++                  P         GI        G+ VI+G+
Sbjct: 828  NPIDLVQQIKNRLNGEQFQ-------------PMAPFYRNFDGIIE--NLPNGNCVIKGL 872

Query: 254  SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                  +   + + + E+P +       E + + + E     I DLR+   +      I+
Sbjct: 873  I---DCNEATDIVTIRELPIKKWTRNYKEWLDKEMAE-EGSQIVDLREYHTKYKIHFEIQ 928

Query: 314  LKRGASADVILNQL--YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +  G   D + N L  ++ +S  S  ++ +   N    +   +  I++ F   R E   +
Sbjct: 929  MVDGFVQD-LKNPLEYFKLSSPASCSNMVLFDSNSKIKKYECVQDIMEEFYQVRLEFYHK 987

Query: 372  RTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFS--PNPETARRELMQRSWNASDIK 428
            R  YL++K  R+   +   L      + E +++         +   +    R      +K
Sbjct: 988  RKDYLISKLDREVQLLDNKLKFIKMVISEEIKLRNVKKVDLVKQLDKFGFTRFSQLIQVK 1047

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTRA----------------------------ILEL 460
                     S     +     SE + ++                            +L +
Sbjct: 1048 STKVKAFGDSQKQQKNVDDDGSEEEEKSGDEDKQQKKQISKKLQQTPSIDISEFNYLLSM 1107

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
             L  LT    + +++ELN           + S  + +   I        D+ 
Sbjct: 1108 PLFSLTYEKVEKLQDELN---------QRVQSREALINKEISLMWREDLDKF 1150


>gi|169787172|gb|ACA80025.1| GyrA [Pectobacterium wasabiae WPP163]
          Length = 163

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLEQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R G+G  A  + + + I
Sbjct: 79  TEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|126797780|gb|ABO27409.1| DNA gyrase subunit A [Sinorhizobium sp. BR816]
          Length = 176

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|89515121|gb|ABD75390.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|89515123|gb|ABD75391.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797756|gb|ABO27397.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|126797758|gb|ABO27398.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797760|gb|ABO27399.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
          Length = 176

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 137/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R    A    +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                E+T+++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|238695410|ref|YP_002922603.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
 gi|220029546|gb|ACL78480.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
          Length = 459

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 157/394 (39%), Gaps = 31/394 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +   T   +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ 
Sbjct: 17  DDTFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFH 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A I+G V    + HG  +  +A A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 77  KLASIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIF 136

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+      +  D     V      D   + P       P VL+NG  GIA G ATNI  
Sbjct: 137 ARIGTNFAKVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGISGIATGYATNILP 192

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H+   V    + V+    +        +  P+F    V               GS  +RG
Sbjct: 193 HSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRGDVV-----------EIEPGSYELRG 237

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                     R Q+ +TEIPY+ ++   + K+ + + +K  +   D  DE+   G++V I
Sbjct: 238 TYKF----TSRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGF-GFKVKI 292

Query: 313 ELKRGASADVILNQ--LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEV 368
             +     +       + +   L    S N+  +N  G       ++ +++ FV  R+  
Sbjct: 293 RKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRKTF 352

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           V +R      K  +              + +V+ 
Sbjct: 353 VQKRID---GKIIETEEAFKLALAKATFIKDVID 383


>gi|126797786|gb|ABO27412.1| DNA gyrase subunit A [Sinorhizobium sp. Le39]
 gi|126797788|gb|ABO27413.1| DNA gyrase subunit A [Sinorhizobium sp. Lc56]
          Length = 176

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 108/174 (62%), Positives = 138/174 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQSAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT I +G  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+
Sbjct: 122 RRTEIADGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|89515109|gb|ABD75384.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797734|gb|ABO27386.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797736|gb|ABO27387.1| DNA gyrase subunit A [Sinorhizobium americanum]
          Length = 176

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 38.8 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKND------SSVEGNISEERCQELKLKEQFIL 801
            +E   Y++ +S++ R++    +E+ +++++      + +     +   ++L  +E  ++
Sbjct: 87  GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMVV 146

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           TVS  G+ KR     +R   R GKG    
Sbjct: 147 TVSHLGYIKRVPLTTYRAQRRGGKGRSGM 175


>gi|11863181|gb|AAD43483.2| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 126

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 74/125 (59%), Positives = 98/125 (78%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|126797742|gb|ABO27390.1| DNA gyrase subunit A [Sinorhizobium fredii]
          Length = 176

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDSLIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|126797804|gb|ABO27421.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 176

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 111/174 (63%), Positives = 139/174 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W + D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRL RLT LGRD+I +ELN++G EI + LDILSSR+R+  I+K EL +V+DE  TP
Sbjct: 62  AILELRLQRLTALGRDEIADELNTIGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+
Sbjct: 122 RRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +    E + Y+  +S++ R+ 
Sbjct: 45  HRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIVDYLDILSSRARVQ 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +    ++   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|169787152|gb|ACA80015.1| GyrA [Brenneria alni]
          Length = 163

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   REGRYYLTEQQAQAILDLRLQKLTGLEHERLLDEYKELLAQIAELLYILESPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAIKAQYSDERRTEITVNTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILT 802
           A   E +  ++       +I  + E I +  +D     +  N ++   ++L  +E  ++T
Sbjct: 43  AQIAELLYILESPERLMEVIREELEAIKAQYSDERRTEITVNTADINIEDLINQEDVVVT 102

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S +G+ K     D+    R G+G  A  + + + I  L+     N +D I+  S +G L
Sbjct: 103 LSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVA---NTHDTILCFSSRGRL 159

Query: 863 IRVP 866
             + 
Sbjct: 160 YWMK 163


>gi|9081891|gb|AAF82628.1| topoisomerase II subunit A [Staphylococcus capitis]
          Length = 143

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 90/143 (62%), Positives = 111/143 (77%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IP HNL EV+DG +++  NPDI 
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPDIT 143


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 88/409 (21%), Positives = 159/409 (38%), Gaps = 35/409 (8%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
            +    + +++     R+IP +R   KP  R++LF   +  +    K  + A    E   
Sbjct: 379 FVNKELILFSM-ADNIRSIPSVR--FKPSQRKVLFCCFKRNLRAELKVAQLAGYVSEHSA 435

Query: 84  KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAA 139
            +H  G A++   +  MAQD+  S  + L+   G FGS  + G   A+ RY    L++  
Sbjct: 436 YHH--GEASLQGCIVNMAQDFVGSNNIHLLPPIGQFGSRLMGGKDAASARYIFTNLEQLT 493

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +   L  D + +  + DG   EP       P VLVNG  GI  G +   P +N  +++
Sbjct: 494 RLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWS---PNYNPLDII 549

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
            G   +I+  +I              P        TG     A  RG+     +      
Sbjct: 550 KGLRQMINGEEIA-------------PLTPWYREFTGHIVEKANSRGTDTGNYIVQGLYE 596

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D   +VV+E+P +       + +  L+       I D ++          I +++ A 
Sbjct: 597 VTDDSTLVVSELPVKSWTQTYKQFLEGLLDAGT---IKDFKENHTDVKVLFTITMEQKAL 653

Query: 320 ADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +DV      + + ++  S  S  ++++    G+  +      I+  F   R E   RR K
Sbjct: 654 SDVTKAPGGIVKKFKLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKK 713

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +L K +D+  +L   A  V  + E   ++      +    ELM   ++
Sbjct: 714 AMLQKLQDQIKLLSNKARFVLAVVEGKLVVNNRK-KQELLEELMAEGYD 761


>gi|126797806|gb|ABO27422.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 176

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 113/174 (64%), Positives = 140/174 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W + D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRSAPDPQTAREQLMERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRL RLT LGRD+I +ELN++G EIK+ LDILSSR+R+  I+K EL +V+DE  TP
Sbjct: 62  AILELRLQRLTALGRDEIADELNTIGDEIKDYLDILSSRARIQQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           RRT + EG  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+
Sbjct: 122 RRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGM 175



 Score = 41.4 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   DE   Y+  +S++ R+ 
Sbjct: 45  HRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGDEIKDYLDILSSRARIQ 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +    ++   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELAAVRDEFGTPRRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|126797748|gb|ABO27393.1| DNA gyrase subunit A [Sinorhizobium kostiense]
 gi|126797750|gb|ABO27394.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQSAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELVAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|28865600|emb|CAD48114.1| topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 165

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/165 (51%), Positives = 117/165 (70%), Gaps = 1/165 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+   
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPK 165


>gi|126797802|gb|ABO27420.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 142/175 (81%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+ +IR +P+P++AR ELM R WNA+D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVILVIRQAPDPQSAREELMTRRWNAADVESLIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I  ELN +G EIK+ LDILSSR+R+  I+K+EL +V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIDEELNQIGAEIKDYLDILSSRARIQTIVKEELSAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-DER 751
           ++      + G        A  +   R +   R  +L + +    +  +     DY D  
Sbjct: 41  DDPRHRINEDGTYNLSEEQARAILELRLA---RLTALGRDEIDEELNQIGAEIKDYLDIL 97

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               +  +  +  +S   +E  + +    V+G + E   ++L  +E  ++TVS  G+ KR
Sbjct: 98  SSRARIQTIVKEELSAVRDEFGTPRRTEIVDGGL-EMDDEDLIAREDMVVTVSHLGYIKR 156

Query: 812 TSSYDFRISNRSGKGIRATD 831
                +R   R GKG     
Sbjct: 157 VPLTTYRAQRRGGKGRSGMT 176


>gi|153873423|ref|ZP_02002012.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
 gi|152070113|gb|EDN67990.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
          Length = 203

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 56/248 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT +G V++  L +F +   +G IA+ LD  ++++SV+      D++L ++ G+ VRF 
Sbjct: 1   MATAYGTVKKTALINFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R    R + GVRGI L   D+VIS+                               
Sbjct: 61  EEKVRSMG-RTARGVRGIRLMPNDKVISLI------------------------------ 89

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                  +  +   ILT +  GFGKRT   D+ +  R  KG+ A
Sbjct: 90  -----------------------ITREGGMILTATVNGFGKRTQIDDYPVKGRGIKGVIA 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V D++ I+L+S++GTL+R PVN I + SR T+GV +    KDE
Sbjct: 127 IKTSDRN--GKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVISRNTQGVHLIRLKKDE 184

Query: 890 RVVSVERI 897
           ++V ++R+
Sbjct: 185 QLVGLDRL 192



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 15/200 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  +   R    G   + +   + +  + I   H  V+ FS  G   +  
Sbjct: 3   TAYGTVKKTALINFSRPRS--NGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++      ARG   +  + L   +++ +++   E         ++ AT +G  +R ++
Sbjct: 61  EEKVRSMGRTARG---VRGIRLMPNDKVISLIITRE------GGMILTATVNGFGKRTQI 111

Query: 663 SDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            D+    R   G IA+K      +++       + DI+L +  G  VR P++ I V + R
Sbjct: 112 DDYPVKGRGIKGVIAIKTSDRNGKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVIS-R 170

Query: 720 NSVGVRGISLAKGDQVISMA 739
           N+ GV  I L K +Q++ + 
Sbjct: 171 NTQGVHLIRLKKDEQLVGLD 190



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFS 593
              M++T +  G+ KR  +  Y  + RG KG   +   D    V     V     ++  S
Sbjct: 93  EGGMILTATVNGFGKRTQIDDYPVKGRGIKGVIAIKTSDRNGKVVGAVQVEDDEDIVLIS 152

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           + G + +  V  + + S   +G  L   + L + E++  +
Sbjct: 153 NRGTLVRTPVNGISVISRNTQGVHL---IRLKKDEQLVGL 189


>gi|321473423|gb|EFX84390.1| hypothetical protein DAPPUDRAFT_30330 [Daphnia pulex]
          Length = 547

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/502 (18%), Positives = 171/502 (34%), Gaps = 54/502 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S +   K I  VS  D ++   + +  N+   R++P + DG     R+ L+  ++   + 
Sbjct: 74  SGDLYAKDIKEVSYHDFVKKDLIRF-RNMEYVRSVPSIMDGFNERQRKTLYTCIKRDYKE 132

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF--GSVDGD 123
                + A    E    Y P     +   +  +AQD+  S  + L+   G F    ++  
Sbjct: 133 EINVAQLAVSVAENCAYYQPD---LLIGTITGLAQDFVGSNNINLLIPNGQFASRHLESK 189

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLVNGGGGI 182
              +  Y    + K    +        + +R   DG    EP       P VLVNG  GI
Sbjct: 190 DVGSPDYIFTMMSKITRKIFHPRDDPLLKYRT--DGNQSIEPEYFAPIIPMVLVNGANGI 247

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
             G  T IP  N  E+++    +++               P  P      G     +   
Sbjct: 248 GTGFKTKIPKQNPREIIENLKRMLNGEK----------PNPMDPWFKGYRGTVERIDQLN 297

Query: 243 T-GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK---RIVDIAD 298
               G + +   + IE          +TE+P  V      + + E +          I D
Sbjct: 298 FVISGELAVLSPTTIE----------ITELPVDVPTENYKKSVLEKLLCGSEECPPIITD 347

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLI 355
            ++       R V+ +       V     +R   LQS++S+  + L   NG      ++ 
Sbjct: 348 YQEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVD 407

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  F   R E+  +R  Y   K       LV     +  +   V I+      +    
Sbjct: 408 DIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNNFLTEISSKVLIVDSEKKFDVLLE 467

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL +R++    +    +   +    + + G         + + +L +   T  G+     
Sbjct: 468 ELRRRNYAPDPLIAW-EKKSNCDVGVANVGCY-------QYLHQLPIRFQTNEGKQAY-- 517

Query: 476 ELNSLGIEIKECL--DILSSRS 495
               L  +IKE    ++LS  S
Sbjct: 518 ----LAKKIKEIRECELLSDPS 535


>gi|219815931|gb|ACL37052.1| GyrA [Salmonella enterica]
          Length = 127

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 102/125 (81%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH 
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 142 LLDDL 146
           L+ DL
Sbjct: 121 LMADL 125


>gi|67590421|ref|XP_665482.1| DNA topoisomerase II [Cryptosporidium hominis TU502]
 gi|54656191|gb|EAL35251.1| DNA topoisomerase II [Cryptosporidium hominis]
          Length = 1069

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/617 (18%), Positives = 210/617 (34%), Gaps = 121/617 (19%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D        ++   D +    + ++      R+IP+L DGLKP  R++LF   +  +   
Sbjct: 70  DYSINNQCRNLRYFDFIHKELVLFSRY-DTTRSIPNLLDGLKPGQRKVLFATFKKKLNNE 128

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDP 124
            K  + A    E    +H  G +++   +  MAQ++  S  L L+E  G FGS    G  
Sbjct: 129 LKVAQLAGYVAEHSAYHH--GESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKD 186

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            +A RY   +L K   ++  +     + +  + DG   EP+      P +LVNG  GI  
Sbjct: 187 ASAARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGT 245

Query: 185 GMATNIPTHNLGEVVDGC-VAVIDNPDIDLDALMEIIRGPDFPTG--------------- 228
           G ++++P +N  +++      +     I +    +  +G  FP                 
Sbjct: 246 GWSSSVPNYNPKDIIMNLKRMLKGEMMIPMTPWYKSFKGKIFPIKQKSKKNSTNNGGGNN 305

Query: 229 ----------------AVILGR---------TGIKNAYATGRGSIVI------RGVSHIE 257
                           ++++G            I+     G G I           +   
Sbjct: 306 NRKKTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANYETFGN 365

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKI------AELVREKRIV--DIADLRDESDRQGYR 309
               + E +V+TE+P +       E +      A       I    I D RD S  +   
Sbjct: 366 WYKKNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSSHESVH 425

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFRE 366
           + + ++        +  + +   L+S  S + + L  +        T + ILK F+  R 
Sbjct: 426 ITVRMRPEKLQQAEMEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEFIPIRL 485

Query: 367 EVVVRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSP----------NPETARR 415
           E+  +R  YLL+K   ++  +   +      +  V+ +   S           N ++ ++
Sbjct: 486 EMYEKRKNYLLSKLNYEKCLLEQKILFLKLVIQGVIGLSNKSKETLVSDLKKNNIKSIKQ 545

Query: 416 -------------ELMQRSWNASDIKDLIDLID-----DSSYTIGSDGTMYLSEVQTRAI 457
                         L Q S + S I +    +D             +   YL   Q   I
Sbjct: 546 VQELTQWVGVGGSNLAQNSISGSGIGEHPSFVDSGDNSMDYINFEMNSFDYLESSQKDGI 605

Query: 458 LE----------------------LRLARLTGLGRDDIRNELNSLGIEIKECLDILS-SR 494
           LE                      + L  LT    + +      L  + +E   +L  S 
Sbjct: 606 LESTSYSRETNKGNELKLFDYLLSMPLWSLTKEKMELLE---ADLIKKTEEYEKLLKTSI 662

Query: 495 SRLLGIIKQELLSVKDE 511
             +      ELL V +E
Sbjct: 663 EEIWNTELDELLKVIEE 679


>gi|168181190|ref|ZP_02615854.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182667970|gb|EDT79949.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 241

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 120/252 (47%), Gaps = 56/252 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T++G +++ ++S +  I + G  A+ L   DE++ V+     ++I++ T+ G C+RF 
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R    R + GV+ I+L K D+ +SM                               
Sbjct: 61  EEDVRPMG-RVATGVKAITLRKTDKAVSM------------------------------- 88

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                 ++ ++++ +L++SE GFGKRT   ++ I  R GKG+  
Sbjct: 89  ----------------------DVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVIT 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++  ++ G +V    V ++D+++LV+     IR+ V+EI   SR   GV +  T+++E
Sbjct: 127 YKIT--DKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEE 184

Query: 890 RVVSVERIRESE 901
           ++V++ +I+  +
Sbjct: 185 KIVAIAKIKSED 196



 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 97/208 (46%), Gaps = 15/208 (7%)

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G +K+  +S Y + R+G  G + + +R++D + D+ +   +  ++  +  G+  +
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKG--GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIR 58

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +      A G   +  ++L + ++  ++    EDE+      ++  +++G  +R 
Sbjct: 59  FNEEDVRPMGRVATG---VKAITLRKTDKAVSMDVVIEDET------LLSISENGFGKRT 109

Query: 661 KLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            + ++    R GK  +     D+   I+      ++++++L       +R  +S I    
Sbjct: 110 DIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEI-SKT 168

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
            RN++GV+ +  ++ ++++++A +   D
Sbjct: 169 SRNAMGVKLMRTSEEEKIVAIAKIKSED 196



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTS 588
            D ++ ++ ++++S  G+ KR  +  Y   RRGGKG     + D+   +     V     
Sbjct: 88  MDVVIEDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDE 147

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           ++  +S     +  V  +   S  A G   + ++  ++ E+I  I     ++
Sbjct: 148 LMLVNSGDVAIRINVSEISKTSRNAMG---VKLMRTSEEEKIVAIAKIKSED 196


>gi|126797798|gb|ABO27418.1| DNA gyrase subunit A [Rhizobium tropici]
          Length = 176

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 143/175 (81%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIRVIRHAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K+EL++V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 3/139 (2%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           ++        G        A  +   R +          GD++  +   +    D     
Sbjct: 41  DDPRHRINDDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSSR 100

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             ++ +   +  +    +E  + +    V+G + E   ++L  +E  ++TVS  G+ KR 
Sbjct: 101 VRIQTIV--KEELIAVRDEFGTPRRTEIVDGGL-EMDDEDLIAREDMVVTVSHLGYIKRV 157

Query: 813 SSYDFRISNRSGKGIRATD 831
               +R   R GKG     
Sbjct: 158 PLTTYRAQRRGGKGRSGMT 176


>gi|219815927|gb|ACL37050.1| GyrA [Salmonella enterica]
          Length = 123

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/123 (61%), Positives = 101/123 (82%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+
Sbjct: 1   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 120

Query: 143 LDD 145
           + D
Sbjct: 121 MAD 123


>gi|27262984|emb|CAD19825.1| gyrase A subunit [Yersinia ruckeri]
 gi|27262986|emb|CAD19826.2| gyrase A subunit [Yersinia ruckeri]
          Length = 134

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/134 (64%), Positives = 104/134 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGS 120

Query: 180 GGIAVGMATNIPTH 193
            GIAVGMATNIP H
Sbjct: 121 SGIAVGMATNIPPH 134


>gi|169787170|gb|ACA80024.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 102/160 (63%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V ++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVDEQFGDERRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +    R      +E    +  + +  N ++   ++L  +E  ++T+S +G+ K     +
Sbjct: 57  RLMEVIREELELVDEQFGDERRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSE 116

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           +    R GKG  A  + + + I  L+     N +D I+  S +G +  + 
Sbjct: 117 YEAQRRGGKGKSAARIKEEDFIDRLLVA---NTHDHILCFSSRGRVYSMK 163


>gi|89515125|gb|ABD75392.1| DNA gyrase subunit A [Sinorhizobium medicae]
 gi|126797762|gb|ABO27400.1| DNA gyrase subunit A [Sinorhizobium medicae]
          Length = 176

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 137/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL SV+DE  TP
Sbjct: 62  AILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R    A    +   +  +  + L +   +    I    +   DE   Y+  +S++ R++
Sbjct: 45  HRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+TS++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|169787186|gb|ACA80032.1| GyrA [Pantoea agglomerans]
          Length = 163

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 106/160 (66%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I E L ILS+  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELLRILSNADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 64  EELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 79  TEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 147/430 (34%), Gaps = 39/430 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S +   K I  VS  D ++   + +  N+   R++P + DG     R+ L+  ++   + 
Sbjct: 257 SGDLYAKDIKEVSYHDFVKKDLIRF-RNMEYVRSVPSIMDGFNERQRKTLYTCIKRDYKE 315

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF--GSVDGD 123
                + A    E    Y P     +   +  +AQD+  S  + L+   G F    ++  
Sbjct: 316 EINVAQLAVSVAENCAYYQPD---LLIGTITGLAQDFVGSNNINLLIPNGQFASRHLESK 372

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLVNGGGGI 182
              +  Y    + K    +        + +R   DG    EP       P VLVNG  GI
Sbjct: 373 DVGSPDYIFTMMSKITRKIFHPRDDPLLKYRT--DGNQSIEPEYFAPIIPMVLVNGANGI 430

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
             G  T IP  N  E+++    +++               P  P      G     +   
Sbjct: 431 GTGFKTKIPKQNPREIIENLKRMLNGEK----------PNPMDPWFKGYRGTVERIDQLN 480

Query: 243 T-GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK---RIVDIAD 298
               G + +   + IE          +TE+P  V      + + E +          I D
Sbjct: 481 FVISGELAVLSPTTIE----------ITELPVDVPTENYKKSVLEKLLCGSEECPPIITD 530

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLI 355
            ++       R V+ +       V     +R   LQS++S+  + L   NG      ++ 
Sbjct: 531 YQEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVD 590

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+  F   R E+  +R  Y   K       LV     +  +   V I+      +    
Sbjct: 591 DIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQNNFLTEISSKVLIVDSEKF-DVLLE 649

Query: 416 ELMQRSWNAS 425
           EL +R++   
Sbjct: 650 ELRRRNYAPD 659


>gi|169787140|gb|ACA80009.1| GyrA [Erwinia psidii]
 gi|169787142|gb|ACA80010.1| GyrA [Erwinia psidii]
          Length = 163

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I E + IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELIYILESAERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I  ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIRDQFGDQRRTEITANSADINIEDLINEEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 79  TEITANSADINIEDLINEEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 138

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVP 866
             L+     N +D I+  S +G L  + 
Sbjct: 139 DRLLVA---NTHDTILCFSSRGRLYWMK 163


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella virus
            1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 189/491 (38%), Gaps = 61/491 (12%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            MT        + +     V + D +    + ++    L R+IP + DG KP  R++L+  
Sbjct: 615  MT--AYEPGNQLDHKKPEVPVPDFIDKELILFSRY-DLERSIPSVVDGFKPSQRKVLYCA 671

Query: 61   MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG 118
             +  +  + K  + +    E    +H  G  ++   +  +AQD+  S  +  +  +G FG
Sbjct: 672  FKRNLTSDVKVAQFSGYVAEHSAYHH--GEVSLQGTIVNLAQDYVGSNNINWLLPEGQFG 729

Query: 119  S--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            S    G   A+ RY   +L      +  D   + + +  + DG   EP       P++LV
Sbjct: 730  SRLQGGKDHASARYIFTKLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILV 788

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GI  G +TNIP++N  ++VD    +     I  + L+E              G  G
Sbjct: 789  NGSSGIGTGSSTNIPSYNPKDIVDNVKRL-----ISGEDLVE--------MKPWYKGFKG 835

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
                  T  G  V +G+        + + IVV+E+P         E + + + EK+I  I
Sbjct: 836  --KIMETSPGVYVTKGLY-----MPNGKTIVVSELPVGKWTHDYKEHL-DGLLEKKI--I 885

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            +  R++         I+     + D++     +  +     +++    +G   +  T + 
Sbjct: 886  SYFREKHSDTDVLFEIDFVGNPNIDIL-----KLETTIRSTNMHAFDPSGKIKKYDTPLD 940

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            I++ +   R+++ V+R  YLL     R ++       +  ++    II    +      E
Sbjct: 941  IIRDWFEVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNND-EIIINKKHESVISAE 999

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIR 474
            L + ++                Y +       L+      I  L L R T L R+   + 
Sbjct: 1000 LEKLNF----------------YKVDGKYDYLLNMR----ISSLTLERATELEREAVKLN 1039

Query: 475  NELNSLGIEIK 485
             EL+ L    +
Sbjct: 1040 KELDDLSKTTE 1050


>gi|89515119|gb|ABD75389.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797752|gb|ABO27395.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797754|gb|ABO27396.1| DNA gyrase subunit A [Sinorhizobium sp. CFN_EC1002]
          Length = 176

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 141/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DE++++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEIIKLIRHAPDPQTAREQLMERRWPAHDVESLIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL++++DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKDELVAIRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RR+ I+EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRSEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           S   +E+ +++++      S +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 SIVKDELVAIRDEFGTPRRSEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|9081893|gb|AAF82629.1| topoisomerase II subunit A [Staphylococcus simulans]
          Length = 143

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 111/143 (77%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IP HNL EV+DG +++  NPDI 
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPDIS 143


>gi|167861156|gb|ACA05281.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 112/148 (75%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAV MATNIP HNL EV++GC+A 
Sbjct: 121 GASGIAVRMATNIPPHNLTEVINGCLAY 148


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 152/447 (34%), Gaps = 57/447 (12%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            ++  D +    + ++                    R  LFG  +  +    K  +     
Sbjct: 668  INYKDFVNKELILFS--------------------RADLFGSFKKKLYKEIKVAQFIGYV 707

Query: 79   GEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECR 134
             E    +H  G  ++   +  MAQD+  S  + L++  G FG+    G   A+ RY    
Sbjct: 708  SEHSAYHH--GEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTCNLGGKDHASARYIYTE 765

Query: 135  LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            L      L  +     +++  N DG   EP       P VLVNG  GI  G ++ IP +N
Sbjct: 766  LSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNWYMPIIPLVLVNGSEGIGTGWSSYIPNYN 824

Query: 195  LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              E++     +++  ++              P      G  G     A   G IV   V+
Sbjct: 825  PREIIANVRRLLNGEEL-------------VPMDPWYKGFRGTIEKSAKEGGYIVNGTVT 871

Query: 255  HIEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             I     D +   +TE+P   +  +    LE I +     +   I D R   D     + 
Sbjct: 872  EI-----DEQTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIEDFRQNGDDAIVDIE 926

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVAFREEVV 369
            I++K    A ++   L++   L S  S + + L       +  T   IL+ F   R +  
Sbjct: 927  IKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGNKKFDTPEQILEEFFPLRLDYY 986

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +  +Y+L        +L      +  +     I+           EL ++ +       
Sbjct: 987  EKSKEYILGNLNRLLLILDNKVRFILGVVNGEIIVSNRK-KAELLIELKEKGFTP----- 1040

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRA 456
             +     S+    +      SE Q  A
Sbjct: 1041 -MPRKGKSTKPQVAGANDDDSEEQEDA 1066


>gi|330980279|gb|EGH78415.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 118

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/116 (62%), Positives = 93/116 (80%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  A
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAA 118


>gi|126797800|gb|ABO27419.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 143/175 (81%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIRVIRGAPDPQSAREELMTRRWPAADVESLIQLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I  ELN +G+EIK+ LDILSSR R+  I+K+EL++V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIDEELNQIGVEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-DER 751
           ++      + G        A  +   R +   R  +L + +    +  +     DY D  
Sbjct: 41  DDPRHRINEDGTYNLSEEQARAILELRLA---RLTALGRDEIDEELNQIGVEIKDYLDIL 97

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              ++  +  +  +    +E  + +    V+G + E   ++L  +E  ++TVS  G+ KR
Sbjct: 98  SSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGL-EMDDEDLIAREDMVVTVSHLGYIKR 156

Query: 812 TSSYDFRISNRSGKGIRATD 831
                +R   R GKG     
Sbjct: 157 VPLTTYRAQRRGGKGRSGMT 176


>gi|122939091|gb|ABM69127.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|126797790|gb|ABO27414.1| DNA gyrase subunit A [Rhizobium indigoferae]
          Length = 176

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 141/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIRVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDLTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K ELL+V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 37.6 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + LA+   +    I    +   +E   Y+  +S++ R+ 
Sbjct: 45  HRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQ 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+ +++++      + +     E   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 TIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRATD 831
             R GKG     
Sbjct: 165 QRRGGKGRSGMT 176


>gi|11863183|gb|AAD43488.2| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 126

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 97/125 (77%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|208972177|gb|ACI32672.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 120

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/120 (63%), Positives = 99/120 (82%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120


>gi|33469560|gb|AAQ19805.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 149

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/149 (52%), Positives = 107/149 (71%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           +  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++
Sbjct: 1   SKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV 
Sbjct: 61  IYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVS 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           F  N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 FAWNFDDTEKEPTVLPAAFPNLLVNGSSG 149


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/283 (22%), Positives = 107/283 (37%), Gaps = 23/283 (8%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
               S    +     +  +D +    + +++   L R+IP + DGLKP  R+ILF   + 
Sbjct: 667 TNFQSGTHLDTEGKYIKYSDFINKELIQFSM-ADLLRSIPSMVDGLKPGQRKILFCSFKR 725

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD 121
            +    K  + +    E    +H  G  ++   +  MAQD+  S  + L++  G FG+ D
Sbjct: 726 NLVKEIKVAQFSGYVSEHSAYHH--GEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRD 783

Query: 122 --GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             G   A+ RY    L      +        +++    DG   EP       P VLVNG 
Sbjct: 784 QGGKDAASARYIFTLLSPITRSIFPKDDDILLNYLDE-DGQSIEPTWYVPILPMVLVNGS 842

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI  G +T IP +N  ++V     ++++              P  P      G  G   
Sbjct: 843 EGIGTGWSTFIPNYNPRDIVANLRRLLNDE-------------PVEPMDPWYRGFKGSIQ 889

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
              T  G +       IE    D   + +TE+P +       E
Sbjct: 890 KTGTKAGGVSYTVTGIIEVV--DDTTLRITELPIRRWSQDYKE 930


>gi|11863185|gb|AAD43498.2| DNA gyrase subunit A [Staphylococcus hominis subsp. hominis]
 gi|12585583|gb|AAG49417.1| gyrase [Staphylococcus hominis subsp. hominis]
          Length = 126

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 98/125 (78%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|11863187|gb|AAD43499.2| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 126

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/125 (59%), Positives = 98/125 (78%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+A+IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDASIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 190/516 (36%), Gaps = 43/516 (8%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              E+ G T +S  + +    + + + V L R+IP L DGLKP  R+IL+ +  +      
Sbjct: 691  TNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDES 747

Query: 70   KYVKCARISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDP 124
              +K ++++G V  +  + HG  ++   + RM Q +  S  L L++  G FG     G+ 
Sbjct: 748  TEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGND 807

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             A+ RY    L      L      D +      +G   EP  LC   P +L+NG  GI  
Sbjct: 808  AASARYIFTALAPTTRLLFPQADDDLLQKNVE-EGMVVEPTWLCPIVPLILINGTEGIGT 866

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
            G +T I   N  +++D     ID+   + +     I     P      G+  +       
Sbjct: 867  GWSTKIANRNPIDIIDMIRRKIDSISTEYE-----IP----PFYEEFRGKLEVVTPTKFI 917

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                +   +   E+ +     I + E+P  +  +   EK++++V    +++ ++   E  
Sbjct: 918  SSGKIQ--LIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSERHTEKR 975

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTLIGILKAFV 362
                  +   K         + L  Y  L++  + N V    NG   E   +  I   F 
Sbjct: 976  VHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFF 1035

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              R ++  +R K    +   +   +      +  +      IR S        +L +  +
Sbjct: 1036 EVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIR-SMGRNQLEEKLQEMGF 1094

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                +  +      ++Y                 +LE+ ++RLT         E  S   
Sbjct: 1095 RVDPMATIAKNSKKANYG---------------YLLEMPVSRLTS-DEMKRLEERKS--R 1136

Query: 483  EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
               E     S+  +   + + EL  + + +   R++
Sbjct: 1137 RRTELEAAESADWK--SVWRSELDKLAEAVGNNRKS 1170


>gi|12585585|gb|AAG49418.1| gyrase [Staphylococcus hominis subsp. novobiosepticus]
          Length = 126

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 97/125 (77%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+ +IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDFSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
          Length = 1054

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 190/516 (36%), Gaps = 43/516 (8%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              E+ G T +S  + +    + + + V L R+IP L DGLKP  R+IL+ +  +      
Sbjct: 575  TNEDDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDES 631

Query: 70   KYVKCARISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDP 124
              +K ++++G V  +  + HG  ++   + RM Q +  S  L L++  G FG     G+ 
Sbjct: 632  TEIKVSQLAGAVAHRQSYHHGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGND 691

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             A+ RY    L      L      D +      +G   EP  LC   P +L+NG  GI  
Sbjct: 692  AASARYIFTALAPTTRLLFPQADDDLLQKNVE-EGMVVEPTWLCPIVPLILINGTEGIGT 750

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
            G +T I   N  +++D     ID+   + +     I     P      G+  +       
Sbjct: 751  GWSTKIANRNPIDIIDMIRRKIDSISTEYE-----IP----PFYEEFRGKLEVVTPTKFI 801

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                +   +   E+ +     I + E+P  +  +   EK++++V    +++ ++   E  
Sbjct: 802  SSGKIQ--LIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSERHTEKR 859

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTLIGILKAFV 362
                  +   K         + L  Y  L++  + N V    NG   E   +  I   F 
Sbjct: 860  VHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFF 919

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              R ++  +R K    +   +   +      +  +      IR S        +L +  +
Sbjct: 920  EVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIR-SMGRNQLEEKLQEMGF 978

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                +  +      ++Y                 +LE+ ++RLT         E  S   
Sbjct: 979  RVDPMATIAKNSKKANYG---------------YLLEMPVSRLTS-DEMKRLEERKS--R 1020

Query: 483  EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
               E     S+  +   + + EL  + + +   R++
Sbjct: 1021 RRTELEAAESADWK--SVWRSELDKLAEAVGNNRKS 1054


>gi|89515117|gb|ABD75388.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 108/175 (61%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQSAREQLMERRWPARDVDALIRLIDDPRHRINEDDTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 42.2 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y++ +S++ R++
Sbjct: 45  HRINEDDTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +E+ +++++      + +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 QIVKDELVAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|161622523|ref|YP_001595383.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
 gi|160213829|gb|ABX11168.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
          Length = 442

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 158/392 (40%), Gaps = 31/392 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +TS  +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ K 
Sbjct: 2   ELTSRGLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKL 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I+G V    + HG  +  +A A MA  W+    L++GQGNFGS      AA RY   R
Sbjct: 62  ASIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIFAR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +      +  D     V      D   + P       P VL+NG  GIA G ATNI  H+
Sbjct: 122 IGTNFAKVYKDTEYAPVHA----DVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPHS 177

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              V    + V+    +        +  P+F    V               GS  +RG  
Sbjct: 178 FDSVKKAVLQVLQEKRVTKPK----VAYPEFRGDVV-----------EIEPGSYELRGTY 222

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                   R Q+ +TEIPY+ ++   + K+ + + +K  +   D  DE+   G++V I  
Sbjct: 223 KF----TSRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGF-GFKVKIRK 277

Query: 315 KRGASADVILNQ--LYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVV 370
           +     +       + +   L    S N+  +N  G       ++ +++ FV  R+  V 
Sbjct: 278 EYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRKTFVQ 337

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           +R      K  +              + +V+ 
Sbjct: 338 KRID---GKIIETEEAFKLALAKATFIKDVID 366


>gi|38640269|ref|NP_944225.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
 gi|33414954|gb|AAQ17997.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
          Length = 438

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 98/491 (19%), Positives = 180/491 (36%), Gaps = 55/491 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    I+  + N    +A+  I  RA+P + DGLKPV R ILF +++      +++ K A
Sbjct: 3   VIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLKN---AGREFKKNA 59

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            ++G +    + HG  A  DA   MA  W+    +I+G+GNFG       AA RY  C  
Sbjct: 60  AVAGVISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFC-- 117

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K   F       + ++     DGS   P       P VL+NG  GIA G AT I  H++
Sbjct: 118 SKHERFESMFKDMELLE-ESTADGSI-LPRYYLPILPTVLLNGVSGIATGFATKIMPHSV 175

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             V      V+ +   D       I+ P F     IL   G   ++              
Sbjct: 176 QSVAKCVEQVLKSGKCDEPE----IQFPKF--FGKILSIEGETQSW-----------KVE 218

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            +     + ++++ E+P + ++   +  + +LV   +IV   D     DR+    V   +
Sbjct: 219 GDYELSGKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGY-DESKMKDREFCFKVTLKR 277

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
               +   + ++++  S      + ++  NG          ++  FV FR  V+ +R   
Sbjct: 278 DFDVSHENIIKVFKL-SQNVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFNVLQKR--- 333

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
                                +D  +   R   +   A+ + ++       + +      
Sbjct: 334 ---------------------IDNAIIATREKLDFAQAKVDFIKLVLADKIVFNRQTRKQ 372

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                I         +     ++++ L  +T      +  ++  L  E        + R 
Sbjct: 373 ----VIEQINAFDELKTYADQLVQMNLYHMTEDEVAKLEKQVAELQKEHDFWKTT-TPRK 427

Query: 496 RLLGIIKQELL 506
           +    IK+ L 
Sbjct: 428 QYQSDIKEFLK 438


>gi|9081889|gb|AAF82627.1| topoisomerase II subunit A [Staphylococcus hominis]
          Length = 143

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 88/143 (61%), Positives = 109/143 (76%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 61  YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IP HNL EV+DG + +  NPDI 
Sbjct: 121 IPPHNLTEVIDGVLRLSQNPDIT 143


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 113/577 (19%), Positives = 206/577 (35%), Gaps = 86/577 (14%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +        ++ GI  V ITD +    + ++I     R+IP + DG K   R+ILF   +
Sbjct: 776  DQYTPGAYLDQYGIKKVKITDFIDKELILFSI-ADCERSIPSIVDGFKTSQRKILFSCFK 834

Query: 63   MGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
              +   KK +K A++ G V     + HG+ ++  A+  +AQ +  +  + ++   G FGS
Sbjct: 835  RNL---KKEIKVAQLIGYVSEQSAYHHGDQSLASAIIGLAQTYVGANNINVLYPGGGFGS 891

Query: 120  V--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   +A RY   RL++ A  L  +     +      DG   +P       P +LVN
Sbjct: 892  RLAGGKDSSAPRYINTRLEEIARTLFPEEDHALLS-HLTDDGKRVQPKWYIPVIPMILVN 950

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G ++ IP +N  ++++    +     I+   L  I+            G  G 
Sbjct: 951  GSKGIGTGWSSTIPNYNPRDLIENMKLL-----IEGKELKPIVP--------WYRGFKGT 997

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM----------------- 280
                     + V +GV        D  ++ +TE+P +                       
Sbjct: 998  IELQTGKTSNFVAKGVWR----KLDEYRLEITELPIESWTNDFKDLVQNLIDPQGKQKRK 1053

Query: 281  --LEKIAELVREK----------------RIVDIAD-----LRDESDRQGYRVVIELKRG 317
               EKI ++ + K                  V IAD     + ++        +IE  + 
Sbjct: 1054 EAKEKIKQVKKGKATSTKVVKRKKKDEDDDEVVIADPIVKSMSNQGTVGSIHFIIETLKP 1113

Query: 318  ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
               ++ +N+ ++     +  ++ +    G   +  T   I+K F   R E   +R  YL 
Sbjct: 1114 VD-EIDVNKTFKLEKKLAETNMTVFDEEGRIKQFETTTDIIKYFFKIRLEYYQKRKDYLC 1172

Query: 378  NKARDRAHVLVG---LAIAVANLDEVV---------------RIIRFSPNPETARRELMQ 419
            +K  +    L       +AV N + V+               +  +FS        E ++
Sbjct: 1173 DKLEEEHRRLSNKARFILAVVNKELVIANVKRLDLVKKLKEMKFDQFSKKVGKKAEEQVK 1232

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +S      ++L    D        +  M         +L L L  LT      I+ E   
Sbjct: 1233 KSKVDKVEEELAVNSDQEEEGSDDEMEMDDDCRGYDYLLSLPLWSLTLERVKKIQEEREK 1292

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
              +E+ +      +   LL + K      K + +  R
Sbjct: 1293 KKVELDKLRGTAITTMYLLDLDKFSESLDKQDAEDQR 1329


>gi|145286586|gb|ABP52100.1| topoisomerase IV subunit ParC [Streptococcus pyogenes]
          Length = 147

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 79/147 (53%), Positives = 106/147 (72%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
            +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IY
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFA 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
            N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|169787132|gb|ACA80005.1| GyrA [Erwinia amylovora]
          Length = 155

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 102/155 (65%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
            G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 1   TGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIRE 60

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 61  ELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 120

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           KG+S   +++EDF+  L + +TH ++L FSS G +
Sbjct: 121 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 155



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 75  TEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFI 134

Query: 839 GALVAVFPVNDNDQIILVSDKGTL 862
             L+     N +D I+  S +G L
Sbjct: 135 DRLLVA---NTHDTILCFSSRGRL 155


>gi|122939097|gb|ABM69130.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797772|gb|ABO27405.1| DNA gyrase subunit A [Ensifer adhaerens]
          Length = 176

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 135/175 (77%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDSLIRLIDDPRHRINEDNTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL ++  E  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMTIVKDELTAISQEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RR+ I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRSEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + L +   +    I    +   +E   Y+  +S++ R++
Sbjct: 45  HRINEDNTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIM 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+T++  +      S +     +   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 TIVKDELTAISQEFGTPRRSEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRAT 830
             R GKG    
Sbjct: 165 QRRGGKGRSGM 175


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 109/499 (21%), Positives = 189/499 (37%), Gaps = 52/499 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + G T +S  + +    + + + V L R+IP L DGLKP  R+IL+ ++ M      K  
Sbjct: 690  DDGKTELSYKEFIDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNMDESTEMKVS 748

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAE 128
            + A         +H  G  ++   + RM Q +  S  L L++  G FG     G+  A+ 
Sbjct: 749  QLAGAVAHRQSYHH--GEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASA 806

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L      L      D  + R   +G   EP  LC   P +LVNG  GI  G +T
Sbjct: 807  RYIFTSLASTTRLLFPHADDDLYEKRIE-EGLVVEPRWLCPIIPLILVNGTEGIGTGWST 865

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             I   N  +V+DG    ID+ +                      G   I+  Y   RG I
Sbjct: 866  KIVNRNAIDVIDGIRRKIDSVE----------------------GEHEIQPYYEDYRGKI 903

Query: 249  --------VIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                    +  G  H+   E+ +     I ++E+P ++  +   EK++++V    IV+ +
Sbjct: 904  EAVTSKKFITTGKIHLSRPERKNASTFSIEISELPIEIWTSKYKEKLSKIVENLPIVEFS 963

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLI 355
            +   E        V   K G       ++L  +  L+S  + N V    NG   E  ++ 
Sbjct: 964  ERHTEKRVNFRLTVDRKKAGRFLQKTNSELLNFFKLRSSITENRVLFDKNGLLKEYKSIS 1023

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             I   F   R ++  +R K   ++   +   +      +  +      +R S   +    
Sbjct: 1024 EIASEFFDVRRDLYEKRLKAQKDECEAKLKYVDNQIKFIDLVTNGTIDLR-SMGRDQLES 1082

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGL------ 468
             L +    +  +         S Y+   +  +  L+  +   + E R  R T L      
Sbjct: 1083 SLEEYGLESDPLSSKTHNAKKSDYSYLLEMPLSRLTSDEMNRLTERRFRRKTDLDAAESA 1142

Query: 469  -GRDDIRNELNSLGIEIKE 486
              R    +EL+ +   I++
Sbjct: 1143 DWRSTWHSELDKVTTAIQK 1161


>gi|311993263|ref|YP_004010129.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
 gi|284178101|gb|ADB81767.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
          Length = 460

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/509 (20%), Positives = 181/509 (35%), Gaps = 63/509 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITD---EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT       ++ +  I  +++ D    + N    +AI  +  RAIP+L DG KPV R ++
Sbjct: 1   MTTIFDMMAKQVDDSIGQLNLRDLQSIIDNEAKEFAIYTVENRAIPNLIDGFKPVQRFVI 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
              + +     +K+ K A ++G V    + HG  +  DA A MA  W+    L++GQGNF
Sbjct: 61  ARALDLSRGNKEKFHKLASVAGGVADLGYHHGEGSAQDAGALMANTWNNNYPLLDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS      AA RY  CR+      +  D          + D     P       P VL+N
Sbjct: 121 GSRLVQKAAASRYIFCRISDNFRKVYKDTEIAP----EHKDKEHVPPAFYLPIIPTVLLN 176

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIA G AT I  H+   VV+     +             ++ P F    V       
Sbjct: 177 GVQGIATGYATKILPHSFESVVECTKLALQGKLDKEPE----VQIPQFRGEVV------- 225

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                   GSI  RG+      S    Q+ ++EIP + ++   +EK+ E + +K  +   
Sbjct: 226 ----RLEDGSIECRGLYKFTSAS----QMYISEIPAKFDRETYVEKVLEPMVDKNFISYV 277

Query: 298 DLRDES--DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERF 352
           D   ++    +       +           ++ R   L    S  +V ++       +  
Sbjct: 278 DDCSKTGFGFKVKFKKDYMLGECDEKYRHEKIMRDFKLVEKMSQFIVVIDENGKLNDKFQ 337

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNP 410
           +   ++K FV  R+  +V+R ++   K ++              + EV+   I+      
Sbjct: 338 SSSELIKHFVEVRKTYIVKRIEH---KIKECDEAFKLALAKAMFIKEVIEGSIVIQGKTR 394

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +    EL  R   A                                ++ + +  +T    
Sbjct: 395 KQLTSELESRPTYAP---------------------------FADKLVSMNIYHITSDEA 427

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLG 499
             +  +   L  E+K   +       +  
Sbjct: 428 KKLAQQAKDLKAELKYWQETTPETEYMKD 456


>gi|44485|emb|CAA37623.1| gyrase A subunit [Mycoplasma pneumoniae]
          Length = 156

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/143 (56%), Positives = 110/143 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  ++
Sbjct: 14  ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R
Sbjct: 74  PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVD 152
           YTE RL K A  LL D+ KDTVD
Sbjct: 134 YTEARLSKLAGELLRDIDKDTVD 156


>gi|60678998|gb|AAX33780.1| topoisomerase IV subunit A [Mycoplasma synoviae]
 gi|60679000|gb|AAX33781.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 170

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 115/165 (69%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G++ +K + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN
Sbjct: 6   LYSMWMLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGN 65

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            GS+D DP AA RYTE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LV
Sbjct: 66  KGSIDDDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLV 125

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           NG  GIA G AT+IP HNL E++D C+  + N       + +II+
Sbjct: 126 NGTKGIASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIK 170


>gi|146231451|gb|ABQ12873.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 147

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/147 (53%), Positives = 105/147 (71%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
            +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IY
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DA+ RM+Q+W  R +L+E  GN GS+DGDPPA  RYTE RL + A +LL D+ K+TV F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAVMRYTEARLSEIAGYLLQDIEKNTVSFA 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
            N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|163784169|ref|ZP_02179106.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880566|gb|EDP74133.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 331

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/118 (57%), Positives = 91/118 (77%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I +E++++YL YA++VI+GRAIPD+RDGLKPV RRIL+ M +  +  N+ Y K
Sbjct: 2   SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            AR  G V+ KYHPHG++++YDAL RMAQD++LR  L++GQGNFGS+DGDPPAA RY 
Sbjct: 62  SARTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRYC 119


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1239

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/539 (18%), Positives = 198/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   S++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEIDIDRSKKSLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G  ++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHSSEASKVAQLSGYISEASAFHH--GEVSLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +     +D+    +G+  EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTPVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP  +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPPFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  D--EFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLANTDVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +                V +NG     F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGALTTWAECEADLALAQR----------VHINGT---VFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSNLAPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLKSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+         +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLTKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQE 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVRMWLTELDKFDKTFQEYERVLVNSIQKEQRSSSITGGVELP 1135


>gi|219923480|emb|CAQ86602.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/138 (61%), Positives = 107/138 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTHNLGEVVD 200
           AVGMATNIP HNL EV++
Sbjct: 121 AVGMATNIPPHNLTEVIN 138


>gi|126797792|gb|ABO27415.1| DNA gyrase subunit A [Rhizobium gallicum]
          Length = 176

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K EL SV+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGDEIKDYLDILSSRVRIQTIVKDELTSVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 41.1 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            R         +   +  +  + LA+   +    I    +   DE   Y+  +S++ R+ 
Sbjct: 45  HRINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGDEIKDYLDILSSRVRIQ 104

Query: 766 SGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
           +   +E+TS++++      + +     E   ++L  +E  ++TVS  G+ KR     +R 
Sbjct: 105 TIVKDELTSVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRA 164

Query: 820 SNRSGKGIRATD 831
             R GKG     
Sbjct: 165 QRRGGKGRSGMT 176


>gi|308813249|ref|XP_003083931.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
 gi|116055813|emb|CAL57898.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/149 (57%), Positives = 111/149 (74%), Gaps = 1/149 (0%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRILFGM ++G+  +K + KCAR+ G+V+GK+HPHG+ A+Y+AL R+AQD+S+   
Sbjct: 32  KPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSAP 91

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLC 168
           L++G GNFGS+D DPPAA RYTECRL K +    L D+  + V F   +DGS  EP VL 
Sbjct: 92  LVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVLP 151

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           AR PN+L+NG  GIAV +ATN+  HNLGE
Sbjct: 152 ARVPNLLINGSSGIAVAVATNMAPHNLGE 180



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 94/271 (34%), Positives = 145/271 (53%), Gaps = 27/271 (9%)

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIE+KRG  A  +L +LY+ T L+  ++VN VAL G KP    L  +L  F+ FR
Sbjct: 204 DGMRVVIEIKRGHDASTVLAELYKKTRLEVNYNVNNVALVGNKPTVMPLRDMLDEFIKFR 263

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + + RRT+++L KA+DR H++ G A  + + D VV+IIR S +  +A ++L ++     
Sbjct: 264 VDTIERRTRFMLGKAQDRKHLVEGFAFVLTDADGVVKIIRGSKDGPSAAKKLREK----- 318

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q+ AIL + L RLTGL  D +  EL  L  +I+
Sbjct: 319 ---------------------HGLSEIQSDAILAMPLRRLTGLEADKLDAELKDLNGQIE 357

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544
               +L+ +S+++ ++ QE    K      RRT + + G  D   ED    +D ++T+S 
Sbjct: 358 YYQGLLNDKSKVIDVLIQEAQEAKTAFARERRTTLEQTGPSDGVIEDEGPPKDNIITLSE 417

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
            GYVKRV  + + AQ RG +G+    +R  D
Sbjct: 418 RGYVKRVCPTNFGAQARGTRGKRMSKLRAND 448


>gi|308235539|ref|ZP_07666276.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 245

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 128/287 (44%), Gaps = 64/287 (22%)

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-------DSRDEI 684
            ++  P  + +    Y+V AT+ G V++  L ++    + G IA++L       +  DE+
Sbjct: 3   AVLSIPNYDVA---KYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADEL 59

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMAIVLH 743
           +    C  E+DI+L +KLG  ++F     ++   GR + GV+G+   + D+++ M +V  
Sbjct: 60  IGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTAGVQGMRFREDDELLDMDVVSV 119

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             +                                                   + +L V
Sbjct: 120 ETS---------------------------------------------------KDLLVV 128

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +GF KRT+  ++R+  R+G G++A  +++    G+LV    V + DQ++ +   G +I
Sbjct: 129 TNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGSLVGALIVEETDQVMAIMKSGKVI 186

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R  VNE++   R T+GV +    K + ++S+ R  E +   + ++ E
Sbjct: 187 RSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEERDDESDNKNEE 233



 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 96/236 (40%), Gaps = 14/236 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DFVTDLFIVSTHTSVLF 591
             +V  +  G VK+  L  Y + R+GG     ++  +E     D +    + ++   ++ 
Sbjct: 14  KYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADELIGAALCNSEDDIIL 73

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            S LG   K +        P  R  A +  +   + + +  +     + S      ++  
Sbjct: 74  VSKLGMSLKFRADD-EQLRPMGRQTAGVQGMRFREDDELLDMDVVSVETSKD----LLVV 128

Query: 652 TKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           T  G  +R  + ++    R+G   K     + R  ++      + + ++   K G+ +R 
Sbjct: 129 TNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQVMAIMKSGKVIRS 188

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            ++ ++   GR + GV      KGD++IS+A     D + D +   ++  +++R L
Sbjct: 189 DVNEVK-RTGRTTQGVTLAKPDKGDEIISIARNEERDDESDNKNEEVEENTSRRNL 243



 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTD 579
            +  L   D   +     ++ V++ G+ KR  +  YR Q R G G   V + +    +  
Sbjct: 107 EDDELLDMDVVSVETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVG 166

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
             IV     V+     G V +  V  +       +G   + +   ++G+ I +I    E 
Sbjct: 167 ALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQG---VTLAKPDKGDEIISIARNEER 223

Query: 640 ESSWNNL 646
           +   +N 
Sbjct: 224 DDESDNK 230


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/541 (17%), Positives = 189/541 (34%), Gaps = 85/541 (15%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            T +  +D +    + ++      RAIP   DG KP  R+IL+  ++  +   K  +K A+
Sbjct: 668  THIKYSDFVDKELILFSSYANY-RAIPSSIDGWKPGQRKILWVCLKNNI---KNDLKVAQ 723

Query: 77   ISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +SG+V  +  + HG A++ + +  M QD+  S  + + +  G  G+    G+   + RY 
Sbjct: 724  LSGKVSEQAAYHHGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYV 783

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L+K    +      D + +    +G   EPV      P VLVNG  GI VG ++ +P
Sbjct: 784  YTALEKITRTIFMKEDDDLLTYN-TDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVP 842

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             +   +++D     ++      D  M  +          I+    IK+           R
Sbjct: 843  QYCPQDIIDNLRRKMN------DEPMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVKWESR 896

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLE----------------------------- 282
            G+        D   I +TE+P  +      +                             
Sbjct: 897  GIVK----KIDDTTIEITELPIGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAKR 952

Query: 283  ---------------KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI---L 324
                            + E V       I++ R+         +I +      ++    L
Sbjct: 953  TKKKAAAGDDPVEQADVEEKVNLGG-PKISEFREYHTNVSVHFIITVDDSQMREIESVGL 1011

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             + ++  S  +  ++ +        +  + + I+  +   R +    R +YL++  + + 
Sbjct: 1012 REFFKLKSSITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQLQY 1071

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +  +   +  +   P   T    L + +++  D K+L   I  +   I   
Sbjct: 1072 KKLSNQARFIREVIAGIIKVNGVP-RATILAALERGNYDLYDDKELTKRIKFADEVIQQH 1130

Query: 445  GT----------------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                              + L E     +L +++  LT    D + +E      E++E L
Sbjct: 1131 NEEEEEQNEFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEML 1190

Query: 489  D 489
             
Sbjct: 1191 K 1191


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 107/546 (19%), Positives = 195/546 (35%), Gaps = 56/546 (10%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            M EH+  +   E+ G+  +S TD +    + ++I     R+IP + DGLK   R+IL+  
Sbjct: 631  MAEHVEGT-YLEQYGVGKLSYTDFINKELILFSI-ADCERSIPSIVDGLKTSQRKILYSC 688

Query: 61   MQMGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
             +  +   KK +K A++ G V     + HG  ++Y  +  MAQ++  S    L+   G +
Sbjct: 689  FKRNL---KKEIKVAQLIGYVSEHSAYHHGEMSLYSTILGMAQEYIGSNNANLLYPSGAY 745

Query: 118  GS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            G+    G   ++ RY   RL   A  L      + +    + DG   +P       P +L
Sbjct: 746  GTRIQGGKDASSARYIHTRLTDVARALYHPDDDNILACVVD-DGKKVQPKHYIPIIPMIL 804

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI  G +T IP++N  ++V+    +++  ++              P      G T
Sbjct: 805  VNGTVGIGTGWSTTIPSYNPRDLVENMKLLLNKQELK-------------PIQPWYRGFT 851

Query: 236  GIKNAYATGRGS-IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            G      +G+G   + RGV              VTE+P         E + EL       
Sbjct: 852  G--EILESGKGGQYLSRGVWR----KLSEHSFEVTELPINSWTQDYREFLDELETPGTKK 905

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
               + +++   +                 + ++++ +S  +  ++ +    G      T 
Sbjct: 906  KRKEEKEKKKGKRSSK--STTTKKPKSKTIEKIFKLSSTINETNMVVFDEEGRIQRFATT 963

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
              I + F   R +   +R  YL  K   +   +       +A +++ + I          
Sbjct: 964  QLIQEHFFGLRMKYYQKRKDYLAEKLSEEFKKLDNKARFILAVINKEIAINNVKKVDIMK 1023

Query: 414  RRELMQ---------------------RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            + + M+                      S++  D  D      D   T  +       E 
Sbjct: 1024 KLKEMKFDMIYNKSIEKIVKEKLKKKKGSFDEEDAVDSDGEEKDDDETDETGSKKSDEER 1083

Query: 453  QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII-KQELLSVKDE 511
                +L + L  LT      I  E +    E    L    S      +I  ++ L  +D 
Sbjct: 1084 GYDYLLSMPLWTLTMERVKKIIEEKDQKKKEWDIHLGTPLSDFYNRDLILVEKALDAQDA 1143

Query: 512  LDTPRR 517
             D   R
Sbjct: 1144 YDEALR 1149


>gi|33469562|gb|AAQ19806.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 146

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/146 (55%), Positives = 106/146 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A+IYD
Sbjct: 1   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDASIYD 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  
Sbjct: 61  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAW 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 NFDDTEKEPTVLPAAFPNLLVNGSSG 146


>gi|126797794|gb|ABO27416.1| DNA gyrase subunit A [Rhizobium huautlense]
          Length = 176

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 134/175 (76%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DE++ +IR +P+P+TAR +LM R W A D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEIILLIRRAPDPQTAREQLMTRRWPAQDVEALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EI + LDILSSR R+  I+K E+  V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGAEISDYLDILSSRLRIQQIVKDEMAEVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I+EG  DM+DED I REDMVVTVSHLGY+KRV L  YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVALGTYRAQRRGGKGRSGMA 176



 Score = 38.8 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 3/146 (2%)

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +       ++        G        A  +   R +          GD++  +   +  
Sbjct: 33  VEALIRLIDDPRHRINDDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISD 92

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
             D       ++ +         D               ++ +E   +L  +E  ++TVS
Sbjct: 93  YLDILSSRLRIQQIVKDEMAEVRDEFGTPRRTEIMEGGPDMDDE---DLIAREDMVVTVS 149

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRAT 830
             G+ KR +   +R   R GKG    
Sbjct: 150 HLGYIKRVALGTYRAQRRGGKGRSGM 175


>gi|218672863|ref|ZP_03522532.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 125

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/108 (76%), Positives = 98/108 (90%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPA    
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAGRTL 109


>gi|138999717|dbj|BAF51233.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999722|dbj|BAF51234.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999724|dbj|BAF51235.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999729|dbj|BAF51236.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539007|dbj|BAG67738.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539009|dbj|BAG67739.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539011|dbj|BAG67740.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539013|dbj|BAG67741.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539015|dbj|BAG67742.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539017|dbj|BAG67743.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539019|dbj|BAG67744.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539021|dbj|BAG67745.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539023|dbj|BAG67746.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539025|dbj|BAG67747.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539027|dbj|BAG67748.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539029|dbj|BAG67749.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539031|dbj|BAG67750.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539033|dbj|BAG67751.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539035|dbj|BAG67752.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539037|dbj|BAG67753.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539039|dbj|BAG67754.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539041|dbj|BAG67755.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539043|dbj|BAG67756.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539045|dbj|BAG67757.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539047|dbj|BAG67758.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539049|dbj|BAG67759.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539051|dbj|BAG67760.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539053|dbj|BAG67761.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 111/143 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNP +    LME++ 
Sbjct: 122 IDAVKLVMDNPYVTTRDLMEVLP 144


>gi|219920965|emb|CAQ76660.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 137

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/136 (61%), Positives = 104/136 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNL 195
            GIAVGMATNIP HNL
Sbjct: 121 SGIAVGMATNIPPHNL 136


>gi|138999748|dbj|BAF51242.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 112/143 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDALKLVMDNPDVTTRDLMEVLP 144


>gi|86279131|gb|ABC88665.1| DNA gyrase A [Ornithobacterium rhinotracheale]
          Length = 136

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/136 (61%), Positives = 108/136 (79%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+GM +MG+  N+ Y K AR+ GEVMGK+HPHG++++YD + RMAQDWS+R +L+
Sbjct: 1   VHRRVLYGMNEMGLLSNRGYKKSARVVGEVMGKFHPHGDSSVYDTMVRMAQDWSMRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGDPPAA RYTE R+QK +  +L D+ K+TVD + N+D +  EP VL  R 
Sbjct: 61  DGQGNFGSVDGDPPAAMRYTEARMQKISEEMLADIDKETVDQKLNFDDTLYEPTVLPTRI 120

Query: 172 PNVLVNGGGGIAVGMA 187
           PN+LVNG  GIAVGMA
Sbjct: 121 PNLLVNGAAGIAVGMA 136


>gi|309807819|ref|ZP_07701751.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168921|gb|EFO71007.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 136

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/134 (57%), Positives = 104/134 (77%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K ARI GEVMGK+HPHG+++I
Sbjct: 1   MSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYKKSARIVGEVMGKFHPHGDSSI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+A+A MAQD+S R +L++G GNFGS+DGD PAA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTEARMSKIAMEMLRDINKDTIDW 120

Query: 154 RPNYDGSFQEPVVL 167
           + NYD +  E    
Sbjct: 121 QRNYDDNENETSSF 134


>gi|219923482|emb|CAQ86603.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/135 (62%), Positives = 104/135 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD
Sbjct: 2   GNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 62  SAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 121

Query: 184 VGMATNIPTHNLGEV 198
           VGMATNIP HNL EV
Sbjct: 122 VGMATNIPPHNLTEV 136


>gi|34419516|ref|NP_899529.1| topoisomerase II small subunit [Vibrio phage KVP40]
 gi|34333197|gb|AAQ64352.1| topoisomerase II small subunit [Vibrio phage KVP40]
          Length = 428

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 165/421 (39%), Gaps = 32/421 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             +++  + +  L YA+  I  RA+ +  DGLKPV R +L+ +++   + +  + K A +
Sbjct: 2   QRTLSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAAL 58

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
              V    + HG  +  DALA MA +W   + +++G+GNFGS      A+ RY   +L  
Sbjct: 59  GSSVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKLHD 118

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
                  D+         + D     P       P +L+NG  GIA G A NI  H+   
Sbjct: 119 NFDLYFKDIHLSP----EHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPEW 174

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V    +  +   +I       +++ P+F       G+             +     + I 
Sbjct: 175 VKKAVLEYLAGKEISE----PVVKFPEF------YGKIE----------KLEHNKYAQIG 214

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                    VVTEIP   + A  + ++ +LV + +I    D   E+ +   R   +    
Sbjct: 215 TVEISGLTAVVTEIPTGFDHAKYIIELDKLVEKGKISSYVDETSETFQFRVRF--KRGAK 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            + + ++  L          ++N++  N        +  ++K FV FR   + +R +   
Sbjct: 273 MTEESVIKTL--KLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRIQDST 330

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            +   RA + +     +  +     I+ F         EL      +  + +L+++  D 
Sbjct: 331 ERTEKRASLAIAKVEFIKRVVSGTIIL-FGKKRAEVAAELKADEAFSEHVTELLNMSVDK 389

Query: 438 S 438
            
Sbjct: 390 M 390


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 105/590 (17%), Positives = 198/590 (33%), Gaps = 100/590 (16%)

Query: 1    MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
            M EHI  +   E+ G+  ++ +D +    + ++I     R+IP++ DGLK  HR+ L+  
Sbjct: 732  MAEHIEGT-FLEQFGVKKLTYSDFINKELVLFSI-ADCERSIPNIVDGLKTSHRKTLYSC 789

Query: 61   MQMGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
             +  +   KK +K A++ G V     + HG A++Y  +  MAQ++  S  + L+   G++
Sbjct: 790  FKRNL---KKEIKVAQLIGYVSEHSAYHHGEASLYSTIVGMAQEFVGSNNINLLNPAGSY 846

Query: 118  GSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            G+    G   ++ RY   RL   A  +        +    + DG   +P       P +L
Sbjct: 847  GTRIAGGKDCSSARYIHTRLNDIARAVYHADDDPILSCVVD-DGKKVQPKFYIPVIPMIL 905

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI  G ++ IP +N  +++      ID               P  P      G  
Sbjct: 906  VNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGK-------------PLKPIKPWYRGFL 952

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE--------- 286
            G   A   G      + +S          +  +TE+P         E + E         
Sbjct: 953  GSIEA-NQGSKVQGGQYLSKGIWKKLSDNRFEITELPIGFWTQDYRELLDELETPGTRKK 1011

Query: 287  ---------------------LVREKRIVD-----------IADLRDESDRQGYRVVIEL 314
                                   R KR+ D           +    + S       +I+ 
Sbjct: 1012 KKEEKEKKAASRKGTKAKPTTTKRSKRVDDDDDNEKVTEATVKSYTNYSSESTIHFIIDT 1071

Query: 315  KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
             +    ++ + ++++  S  +  ++ +    G      T   + + F   R +    R  
Sbjct: 1072 IQPVD-EINIEKVFKLVSTINETNMVVFDEEGRIQRFATTTALQEHFFPLRIKHYQMRKD 1130

Query: 375  YLLNKARDRAHVLVG---LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            +L  +  +    L       +AV N + V+  ++        +     R  N +  K   
Sbjct: 1131 FLSERLSEEYSRLSNKARFILAVVNKELVISNVKKVDLINKLKEMKFDRIINKNSNKSAR 1190

Query: 432  DLI--------DDSSYTIGSDGTMYLSEVQ------TRAILELRLARLTGLGRDDIRNEL 477
            D I        ++ +     +      E Q         +L L L  LT      +  E 
Sbjct: 1191 DKIKKKKNAFDEEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEER 1250

Query: 478  NSLGI----------------EIKECLDILSSRSRLLGIIKQELLSVKDE 511
            +S                   ++      L  +      +K +  S+K  
Sbjct: 1251 DSKKKEWDILLSTPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKKR 1300


>gi|33338050|gb|AAQ13647.1|AF173980_1 topoisomerase IV [Pasteurella multocida]
          Length = 144

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 77/144 (53%), Positives = 104/144 (72%), Gaps = 1/144 (0%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S 
Sbjct: 1   DGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY 60

Query: 107 RLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           R  L++GQGN+G+ D     AA RYTE RL K A  LL +LG+ TVD++PN+DG+ +EP 
Sbjct: 61  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQ 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATN 189
            L AR P++L+NG  GIAVGMAT 
Sbjct: 121 YLPARLPHILLNGTTGIAVGMATK 144


>gi|11863195|gb|AAD43672.2| topoisomerase IV subunit A [Staphylococcus hominis subsp. hominis]
          Length = 143

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 106/143 (74%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 90/491 (18%), Positives = 181/491 (36%), Gaps = 50/491 (10%)

Query: 33  AINVILG--RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHG 89
           A++ I    R+IP   DGLKP  R+I+  +    +  +K+  K + +SG V     + HG
Sbjct: 356 AMHSISDNLRSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSLSGLVTTYAQYHHG 411

Query: 90  NAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
             ++   +  MAQ++    ++ LLL  GQ    S+ G   A  RY   +L      L ++
Sbjct: 412 EQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYISTKLSSLTTKLFNE 471

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
               T+++    +G   EP       P VL+NG  GI  G +T +P  N  E+       
Sbjct: 472 DDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREICQQIK-- 528

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
                 + + L         P      G           +GS +             +  
Sbjct: 529 RKLRGEEFEEL--------VPWYKGFTGSITAGTNQYIAKGSFIQH-----------KNH 569

Query: 266 IVVTEIPYQVN---KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           + +TEIP + +     A ++   E+   K   +I D+++          +++        
Sbjct: 570 LYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDMKEYHAGNKVCFELKVTDEVLKQD 629

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           I  + ++  +  ++ ++ +    G       +  IL  F   R +    R +YLL+K ++
Sbjct: 630 I-EKYFKLQTTIAMTNLVLFNEKGLLKRYSNVSEILDEFYQTRIKFYQLRKEYLLSKYQN 688

Query: 383 RAHVLVGL-AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
              ++          +D  +++          + E+ ++  +    K +  +    S  I
Sbjct: 689 ELELVQSKSKFIEGMIDNSIQLRGLK------KMEMCKKLQSLG-FKGISKMEKVKSTRI 741

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
             D      E Q   +L + +   +       + ++  L  +I        ++     I 
Sbjct: 742 SKDFDADNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQITAL-----NKKTPQQIW 796

Query: 502 KQELLSVKDEL 512
            ++L    +EL
Sbjct: 797 SEDLDEFLEEL 807


>gi|126797796|gb|ABO27417.1| DNA gyrase subunit A [Rhizobium galegae]
          Length = 176

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 135/175 (77%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DE++ +IR +P+P+TAR +LM R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEIILLIRRAPDPQTAREQLMTRRWPAQDVDALIRLIDDPRHKINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EI + LDILSSR R+  I+K EL +V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGAEISDYLDILSSRLRIQTIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RR++I++  L+M+DED I REDMVVTVSHLGY+KRV L  YRAQRRGGKGRSG+ 
Sbjct: 122 RRSQILDAGLEMDDEDLIAREDMVVTVSHLGYIKRVTLGTYRAQRRGGKGRSGMA 176


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 198/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   +++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP+ +  +V      +I+        +  I+       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRGMINGESAKQV-VRNIVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGSLTTWAECETDLALAQRIYIN-------------GTVFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLNPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|138999588|dbj|BAF51190.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999590|dbj|BAF51191.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999592|dbj|BAF51192.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999598|dbj|BAF51193.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999602|dbj|BAF51194.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999604|dbj|BAF51195.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999606|dbj|BAF51196.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999609|dbj|BAF51197.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999611|dbj|BAF51198.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999614|dbj|BAF51199.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999616|dbj|BAF51200.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999623|dbj|BAF51202.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999625|dbj|BAF51203.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999627|dbj|BAF51204.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999633|dbj|BAF51205.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999635|dbj|BAF51206.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999637|dbj|BAF51207.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999642|dbj|BAF51208.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999644|dbj|BAF51209.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999649|dbj|BAF51210.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999651|dbj|BAF51211.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999653|dbj|BAF51212.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999658|dbj|BAF51213.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999660|dbj|BAF51214.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999662|dbj|BAF51215.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999664|dbj|BAF51216.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999666|dbj|BAF51217.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999668|dbj|BAF51218.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999695|dbj|BAF51227.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999701|dbj|BAF51228.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999705|dbj|BAF51229.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999707|dbj|BAF51230.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999711|dbj|BAF51231.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999731|dbj|BAF51237.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999733|dbj|BAF51238.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999739|dbj|BAF51239.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999760|dbj|BAF51245.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000003|dbj|BAF51146.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000005|dbj|BAF51147.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000008|dbj|BAF51148.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000010|dbj|BAF51149.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000012|dbj|BAF51150.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000017|dbj|BAF51151.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000022|dbj|BAF51152.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000024|dbj|BAF51153.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000030|dbj|BAF51154.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000032|dbj|BAF51155.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000034|dbj|BAF51156.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000038|dbj|BAF51157.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000040|dbj|BAF51158.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000045|dbj|BAF51159.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000050|dbj|BAF51160.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000052|dbj|BAF51161.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000058|dbj|BAF51162.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000060|dbj|BAF51163.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000064|dbj|BAF51164.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000066|dbj|BAF51165.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000068|dbj|BAF51166.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000071|dbj|BAF51167.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000073|dbj|BAF51168.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000079|dbj|BAF51169.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000081|dbj|BAF51170.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000087|dbj|BAF51171.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000089|dbj|BAF51172.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000092|dbj|BAF51173.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000097|dbj|BAF51174.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000099|dbj|BAF51175.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000104|dbj|BAF51176.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000106|dbj|BAF51177.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000108|dbj|BAF51178.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000114|dbj|BAF51179.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000116|dbj|BAF51180.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000119|dbj|BAF51181.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000121|dbj|BAF51182.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000123|dbj|BAF51183.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000128|dbj|BAF51184.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000130|dbj|BAF51185.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000133|dbj|BAF51186.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000135|dbj|BAF51187.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000141|dbj|BAF51188.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000143|dbj|BAF51189.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538783|dbj|BAG67626.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538785|dbj|BAG67627.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538787|dbj|BAG67628.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538789|dbj|BAG67629.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538791|dbj|BAG67630.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538793|dbj|BAG67631.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538795|dbj|BAG67632.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538797|dbj|BAG67633.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538799|dbj|BAG67634.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538801|dbj|BAG67635.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538803|dbj|BAG67636.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538805|dbj|BAG67637.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538807|dbj|BAG67638.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538809|dbj|BAG67639.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538811|dbj|BAG67640.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538813|dbj|BAG67641.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538815|dbj|BAG67642.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538817|dbj|BAG67643.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538819|dbj|BAG67644.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538821|dbj|BAG67645.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538823|dbj|BAG67646.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538825|dbj|BAG67647.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538827|dbj|BAG67648.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538829|dbj|BAG67649.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538831|dbj|BAG67650.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538833|dbj|BAG67651.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538835|dbj|BAG67652.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538837|dbj|BAG67653.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538839|dbj|BAG67654.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538841|dbj|BAG67655.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538843|dbj|BAG67656.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538845|dbj|BAG67657.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538847|dbj|BAG67658.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538849|dbj|BAG67659.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538851|dbj|BAG67660.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538853|dbj|BAG67661.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538855|dbj|BAG67662.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538857|dbj|BAG67663.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538859|dbj|BAG67664.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538861|dbj|BAG67665.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538863|dbj|BAG67666.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538865|dbj|BAG67667.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538867|dbj|BAG67668.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538869|dbj|BAG67669.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538871|dbj|BAG67670.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538873|dbj|BAG67671.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538875|dbj|BAG67672.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538877|dbj|BAG67673.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538879|dbj|BAG67674.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538881|dbj|BAG67675.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538883|dbj|BAG67676.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538885|dbj|BAG67677.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538887|dbj|BAG67678.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538889|dbj|BAG67679.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538891|dbj|BAG67680.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538893|dbj|BAG67681.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538895|dbj|BAG67682.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538897|dbj|BAG67683.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538899|dbj|BAG67684.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538901|dbj|BAG67685.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538903|dbj|BAG67686.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538905|dbj|BAG67687.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538907|dbj|BAG67688.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538909|dbj|BAG67689.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538911|dbj|BAG67690.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538913|dbj|BAG67691.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538915|dbj|BAG67692.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538917|dbj|BAG67693.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538919|dbj|BAG67694.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538921|dbj|BAG67695.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538923|dbj|BAG67696.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538925|dbj|BAG67697.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538927|dbj|BAG67698.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538929|dbj|BAG67699.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538931|dbj|BAG67700.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538933|dbj|BAG67701.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538935|dbj|BAG67702.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538937|dbj|BAG67703.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538939|dbj|BAG67704.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538941|dbj|BAG67705.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538943|dbj|BAG67706.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538945|dbj|BAG67707.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538947|dbj|BAG67708.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538949|dbj|BAG67709.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539001|dbj|BAG67735.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539003|dbj|BAG67736.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539005|dbj|BAG67737.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 112/143 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|138999671|dbj|BAF51219.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999673|dbj|BAF51220.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999675|dbj|BAF51221.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999677|dbj|BAF51222.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999679|dbj|BAF51223.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999685|dbj|BAF51224.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999687|dbj|BAF51225.1| DNA gyrase subunit A [Streptococcus mutans NN2025]
 gi|138999689|dbj|BAF51226.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999713|dbj|BAF51232.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538951|dbj|BAG67710.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538953|dbj|BAG67711.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538955|dbj|BAG67712.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538957|dbj|BAG67713.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538959|dbj|BAG67714.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538961|dbj|BAG67715.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538963|dbj|BAG67716.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538965|dbj|BAG67717.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538967|dbj|BAG67718.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538969|dbj|BAG67719.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538971|dbj|BAG67720.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538973|dbj|BAG67721.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538975|dbj|BAG67722.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538977|dbj|BAG67723.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538979|dbj|BAG67724.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538981|dbj|BAG67725.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538983|dbj|BAG67726.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538985|dbj|BAG67727.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538987|dbj|BAG67728.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538989|dbj|BAG67729.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538991|dbj|BAG67730.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538993|dbj|BAG67731.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538995|dbj|BAG67732.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538997|dbj|BAG67733.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538999|dbj|BAG67734.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 111/143 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D     +DNPD+    LME++ 
Sbjct: 122 IDAVKLAMDNPDVTTRDLMEVLP 144


>gi|326536573|ref|YP_004301004.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
 gi|312262919|gb|ADQ53175.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
          Length = 450

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 180/466 (38%), Gaps = 35/466 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   SI+  + N    +   VI+ RA+P L DGLKP  R +L+  ++        + K 
Sbjct: 2   KIVERSISSYIDNEAKEFTFYVIVNRALPSLIDGLKPSQRFVLYSAIKTCQC---GFKKN 58

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + G +    +PHG  + +D  ++MA +++    ++EG+GNFGS      A  RY  C+
Sbjct: 59  AYLCGVLSDYGYPHGETSAFDVASKMATEYANNYPVLEGRGNFGSRANRDAAEPRYIFCK 118

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L    H +  D          N   S+  P       P VL+NG  GIA   ATNIP H+
Sbjct: 119 LNSNFHDIFKDED----LLLDNEIVSYSIPKFYLPVIPFVLLNGVKGIASAYATNIPPHD 174

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +  V+D CV  +     D       ++ P F           I              GV 
Sbjct: 175 IHSVIDECVKYVKTGKCDNPK----VKYPSF-----------IGKVNTPDNEQWTNEGVY 219

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            ++     + ++ + +IP+  ++   +    +L+   +IV   ++  E D     V ++ 
Sbjct: 220 ELQ----GKTKLTIKDIPFSYDRIKYVSIRNKLIDSDQIVGYDEIEGEGDFTFR-VTLKR 274

Query: 315 KRGASADVILNQLYRYTSLQSL-----FSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
               S + I+ +     ++           NMV              ++  F+ +R  +V
Sbjct: 275 DFDTSHENIMAKFDLRENINPTLVTIGPYSNMVTQEMDLRIYKHSRELIADFINYRLPIV 334

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R + +++    +      L   V  +            P+ A  + ++          
Sbjct: 335 DQRIQNMIDVIPKKI---PELKARVEFIRLARDGKVNFNQPKKAMIKQVEGLMEPELAIF 391

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
              ++    + +  D    L++   +AI +L   + T   ++ +++
Sbjct: 392 SDKVVGMPIFNMTDDEIARLNKEYEQAISDLDYWKNTNSKKEYLKD 437


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 98/539 (18%), Positives = 198/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   +++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEVDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L +    L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFGRLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP+ +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGSLTTWAECETDLALAQRIYIN-------------GTVFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMKM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|326536392|ref|YP_004300833.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
 gi|299483473|gb|ADJ19567.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
          Length = 442

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/461 (22%), Positives = 179/461 (38%), Gaps = 34/461 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +TD +      +A+  +  RAIP+L DGLKPV R +L   +Q+       Y K A ++G 
Sbjct: 8   LTDIINGEARDFALYTVENRAIPNLMDGLKPVQRFVLHRAIQLCKSKPDDYHKLAGVAGA 67

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
                + HG  +  DA A MA  W+    +++G+GNFGS      AA RY ECR+     
Sbjct: 68  AASLGYHHGEVSAQDAGALMANTWNNNCPILDGKGNFGSRLVQKAAASRYIECRVHDNFR 127

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
               D          + D     P       P VL+NG  GI  G ATNI  H+   +++
Sbjct: 128 KYFKDTEVAP----AHKDDDHIPPAYYLPIIPMVLINGVQGIGTGFATNILPHSEASIIE 183

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                +             ++ P F    V       +N Y+   GS  + G + IE   
Sbjct: 184 CTKLALQGKLDKEPQ----VQFPQFKGTVVC----NDENKYSLF-GSYKLIGKTQIE--- 231

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS- 319
                  +TEIPY+ ++A  +E   +++    +  I    D   + G+   ++L +  + 
Sbjct: 232 -------ITEIPYKYDRADYVENCLDILESDGL--IVSYDDNCGKHGFGFKVKLAKAFNL 282

Query: 320 ----ADVILNQLYRYTSLQSLFSVNM-VALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
               A      + ++   Q +      +   G          ++  FV  R++ V  R  
Sbjct: 283 PEDEAKRHAYIVDKFKLKQDITQFIYTIDEVGALRGFPNASSLIHHFVEVRKQFVQARID 342

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
               +AR    + +  A  +  + +   +I+     E     +      AS++  L+ L 
Sbjct: 343 KKTEEARRNLQLAIAKAFFIRKVLDGTIVIKGKKRQELKDEIVALGEPFASNVDALLSL- 401

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
             + Y +  D  + L E    A  EL     T    + +++
Sbjct: 402 --NVYHMAEDEAVKLLERAQEAKSELEYWTSTDAVTEYMKD 440


>gi|11863189|gb|AAD43654.2| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 143

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 104/143 (72%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISSGYATDIP 143


>gi|11863191|gb|AAD43664.2| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 143

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 106/143 (74%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  LL D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+L+NG  GI+ G AT+IP
Sbjct: 121 ARFPNLLINGSTGISSGYATDIP 143


>gi|11863193|gb|AAD43671.2| topoisomerase IV subunit A [Staphylococcus hominis]
 gi|12585588|gb|AAG49419.1| topoisomerase IV subunit A [Staphylococcus hominis subsp.
           novobiosepticus]
          Length = 143

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 105/143 (73%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDFSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|138999741|dbj|BAF51240.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999746|dbj|BAF51241.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 112/143 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ +MAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVQMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/506 (19%), Positives = 180/506 (35%), Gaps = 55/506 (10%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            +  + S+  E K    +  +D +    L +  NV   R+IP + DG KP  R IL+   +
Sbjct: 798  QKFVKSNLLEYKPKMQIPYSDFIDKD-LIFFSNVDNDRSIPSMIDGFKPSQRMILYCCFK 856

Query: 63   MGVEWNKKYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF-- 117
             G     K VK ++++G V     + HG A++  A+  MAQ++  S  + ++   GNF  
Sbjct: 857  RGRHS--KEVKVSQLAGYVSENTDYHHGEASLQGAIIGMAQNFPGSNNINILVPNGNFGY 914

Query: 118  GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLV 176
                G   A+ RY    L   A+++  +   + + +  NYD   + EP V     P  ++
Sbjct: 915  RRKGGKEHASPRYIFTELHPIANYIFREEDDEILKY--NYDDDMKVEPDVFAPIIPLGII 972

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GI  G + N+P HN  +VV     +I+  D               P      G  G
Sbjct: 973  NGSQGIGTGFSNNVPPHNPLDVVANLKRLINEKD----------PVDMLP---WYNGFKG 1019

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
                        +IRG   I     D  +I + +IP        +E     + +K     
Sbjct: 1020 TIEKNPKATNKYIIRGKYCI-----DGNKIHIEDIPI---VNGWIEPYESKMEQKEDDGQ 1071

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
               +      G                L++    T   S+ ++NM    G   +  ++  
Sbjct: 1072 ELQKLYKTGVG---------------NLDKFLNMTQSLSVTNLNMFNSKGKMTKYNSISD 1116

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            +L  F  +R E+  +R ++   K ++   +     +          I            +
Sbjct: 1117 VLYEFYEYRLEMYQKRKEFFFLKLQNDLDIST-YKVKFIREYLAKTIKIAKKKVVEVIAQ 1175

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI------LELRLARLTGLGR 470
            L  + +        + +   S   +     M L++ + + +       ++   +      
Sbjct: 1176 LETKGYPKMASDHRLPMASRSYRYLTDMSIMTLTDDKIKELENNMEHCQMLYDQYLNTPI 1235

Query: 471  DDI-RNELNSLGIEIKECLDILSSRS 495
              I  NEL+      K+    L +  
Sbjct: 1236 KKIWLNELDEFLSMYKKYFTNLENPD 1261


>gi|138999618|dbj|BAF51201.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 112/143 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AIEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 199/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   +++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP+ +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGSLTTWAECETDLALAQRIYIN-------------GTVFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain Friedlin]
          Length = 1236

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 198/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   +++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEVDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G   AA RY   +L + A  L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP+ +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGSLTTWAECETDLALAQRIYIN-------------GTVFSPA 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 199/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   +++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP+ +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGSLTTWAECETDLALAQRIYIN-------------GTVFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 199/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++   +++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEIDIDRSKKTLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHNSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP+ +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V +      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVRDGSLTTWAECETDLALAQRIYIN-------------GTVFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|60678992|gb|AAX33777.1| DNA gyrase subunit A [Mycoplasma synoviae]
          Length = 135

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/135 (54%), Positives = 105/135 (77%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ M ++G+    +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++
Sbjct: 1   HRRILYDMSELGMTPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVD 60

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           G GNFGS+DGD PA+ RYTE R+ K +  LL+ + K+TVDF  NYD + +EP VL +R+P
Sbjct: 61  GHGNFGSIDGDEPASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFP 120

Query: 173 NVLVNGGGGIAVGMA 187
           N+LV+G  GIAVGMA
Sbjct: 121 NLLVSGSIGIAVGMA 135


>gi|138999757|dbj|BAF51244.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 112/143 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP++L +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLILPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|83777805|gb|ABC47039.1| gyrase A subunit [Yersinia enterocolitica]
          Length = 107

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 90/107 (84%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           HG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 107


>gi|138999750|dbj|BAF51243.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 111/143 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HN GE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNSGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|7262521|dbj|BAA92800.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/140 (61%), Positives = 109/140 (77%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 192 THNLGEVVDGCVAVIDNPDI 211
            HNL EV++GC+A ID+ DI
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|312262749|gb|ADQ53044.1| gp52 topoisomerase II medium subunit [Aeromonas phage PX29]
          Length = 438

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 100/493 (20%), Positives = 191/493 (38%), Gaps = 57/493 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T   I+  +      +A+  I  RA+P + DGLKP  R IL+ +++      +++ K 
Sbjct: 2   KVTKRPISSMVDVEAREFAMYTIEERALPSVVDGLKPAQRYILYSVLKN---AGREFKKN 58

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I+G +    + HG  A  DA   MA  W+    +I+G+GNFGS      AA RY  C 
Sbjct: 59  AAIAGVISEYGYNHGETAAMDAACLMASTWNNNFPVIQGRGNFGSRAVQEGAAARYIFCT 118

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  +  D+           DGS   P       P VL+NG  GIA G +T I  HN
Sbjct: 119 KHSNFDSMFKDMDLLEESLA---DGSI-LPRYYLPILPTVLLNGVSGIATGFSTKILPHN 174

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +  V      V+     D   L    + P F     I+   G   ++             
Sbjct: 175 VQSVAKCVEQVLKTGKCDEPEL----QFPKF--FGKIIPIEGKSQSWTL----------- 217

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E     + ++ +TE+P + ++   +  + +LV   +IV   + + +     +++ ++ 
Sbjct: 218 EGEYELSGKTKLTITELPPKYDRVKYVTLLNKLVDADKIVSYDESKFDGREFCFKITLKR 277

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +  A+ + I+ + ++ +   S + + ++  NG          ++  FV FR  V+ +R  
Sbjct: 278 EFDATHENIM-KTFKLSQAISQY-IRVIDPNGELKAYEKASDLIVDFVNFRFGVLQKR-- 333

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             ++ A+  A+  +G A A     + V            +  +   +     ++ +    
Sbjct: 334 --IDNAKLVANEKLGFARAKVTFIKHVLD----------QDIIFTNNTRKQVVEQISAFD 381

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           D   Y                 ++++ L  +T      +  ++  L  E        S++
Sbjct: 382 DLKEY--------------AEQLVQMNLYHMTDDEVLKLEKQVIELKKESDFWET--STQ 425

Query: 495 SRLLG-IIKQELL 506
            +     IK+ L 
Sbjct: 426 KKQYQSDIKEFLK 438


>gi|62288333|gb|AAX78442.1| ParC [Brevundimonas diminuta]
          Length = 144

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/140 (57%), Positives = 101/140 (72%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           K VHRRI++ M QM +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  
Sbjct: 4   KAVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYP 63

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFG++DGD  AA RYTEC+L  AA  LLD + +D VDFRP YD   +EPVVL A
Sbjct: 64  LVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPA 123

Query: 170 RYPNVLVNGGGGIAVGMATN 189
            +PN+L NG  GIAVGM   
Sbjct: 124 GFPNLLANGSSGIAVGMRNQ 143


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 91/533 (17%), Positives = 192/533 (36%), Gaps = 69/533 (12%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            T +  +D +    + ++      RAIP   DG KP  R+IL+  ++  +   K  +K A+
Sbjct: 668  THIKYSDFVDKELILFSSYANY-RAIPSSIDGWKPGQRKILWVCLKNNI---KNDLKVAQ 723

Query: 77   ISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +SG+V  +  + HG A++ + +  M QD+  S  + + +  G  G+    G+   + RY 
Sbjct: 724  LSGKVSEQAAYHHGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYV 783

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L+K    +      D + +    +G   EPV      P VLVNG  GI VG ++ +P
Sbjct: 784  YTALEKITRTIFMKEDDDLLTYN-TDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVP 842

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG--RGSIV 249
             +   +++D     +++    +  +     G       + + + G+K        RG + 
Sbjct: 843  QYCPQDIIDNLRRKMNDE--PMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVKWESRGIVK 900

Query: 250  IRGVSHIEKT--SGDREQIVVTEI-----------PYQV--------------------- 275
                + IE T  +         +            P++                      
Sbjct: 901  KIDDTTIEITEFTNGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAKRTKKKAAAG 960

Query: 276  NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTS 332
            +       + E V       I++ R+         +I +      ++    L + ++  S
Sbjct: 961  DDPVEQADVEEKVNLGG-PKISEFREYHTNVSVHFIITVDDSQMREIESVGLREFFKLKS 1019

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
              +  ++ +        +  + + I+  +   R +    R +YL++  + +   L   A 
Sbjct: 1020 SITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQLQYKKLSNQAR 1079

Query: 393  AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT------ 446
             +  +   +  +   P   T    L + +++  D K+L   I  +   I           
Sbjct: 1080 FIREVIAGIIKVNGVP-RATILAALERGNYDLYDDKELTKRIKFADEVIQQHNEEEEEQN 1138

Query: 447  ----------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      + L E     +L +++  LT    D + +E      E++E L 
Sbjct: 1139 EFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEMLK 1191


>gi|310722590|ref|YP_003969413.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
 gi|306021433|gb|ADM79967.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
          Length = 438

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 185/492 (37%), Gaps = 57/492 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +T   I+  + N    +A+  I  RA+P + DGLKPV R IL+ +++      K + K A
Sbjct: 3   VTKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILYSVLKN---AGKSFKKNA 59

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I+G +    + HG  A  DA   MA  W+    +I+GQGNFGS      AA RY  C  
Sbjct: 60  AIAGVISEYGYNHGEVAAMDAACLMASTWNNNFPIIQGQGNFGSRAVQEGAAARYIFC-- 117

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K   F       + ++     DGS + P       P VL+NG  GIA G AT I  H+L
Sbjct: 118 TKHDQFDSMFKDMELLE-ESTADGS-ELPRYYLPILPTVLLNGVSGIATGFATKILPHSL 175

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             V      V+     D   +        FP     +     KN   T  G   + G   
Sbjct: 176 VSVAKCVEQVLKTGKCDEPQIQ-------FPLFYGKITPVVDKNQAWTLEGCYELSG--- 225

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
                  + ++ ++EIP + ++   +  + +LV   +IV   D     DR+    +   +
Sbjct: 226 -------KTKLTISEIPVKYDRVKYVTLLDKLVETDKIVGY-DESKMDDREFCFKITLKR 277

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
              ++   + + ++         + ++  NG          ++  FV +R  ++ +R   
Sbjct: 278 DFDTSHENIIKTFKLA-QNVSQYIRVIDQNGDLKPYEKASDLIVDFVNYRFGILQKR--- 333

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            ++ A       +G A A     ++V   +   + +T ++                    
Sbjct: 334 -IDNAIVATTEKLGYAQAKVEFIKLVLDEKIKFHKQTRKQ-------------------- 372

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                I         +     ++++ L  +T      +  ++  L  E     +  +S  
Sbjct: 373 ----VIEQIQAFDSLKDYAEQLVQMNLYHMTEDELTKLEKQVTELTKENDFWKN--TSPK 426

Query: 496 RLLG-IIKQELL 506
           +     IK+ L 
Sbjct: 427 KQYQSDIKEFLK 438


>gi|7262517|dbj|BAA92798.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/140 (62%), Positives = 110/140 (78%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 192 THNLGEVVDGCVAVIDNPDI 211
            HNL EV++GC+A ID+ DI
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 195/551 (35%), Gaps = 84/551 (15%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +S+ E+ EK  T ++  + + +  + + +   L R+IP L DGLKP  R+IL+ +++M  
Sbjct: 688  VSTTEDVEK--TELNYEEFVNSQLMQFGM-ADLKRSIPSLIDGLKPSQRKILWTLLKMDE 744

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS---- 119
                K  + A         +H  G  ++   + RM Q +  +  + L++  G FG+    
Sbjct: 745  TTEMKVSQLAGAVAHRQSYHH--GEESLVRTIVRMGQTFCGASNMPLLQPIGQFGTRHEV 802

Query: 120  --VDGDPPAAERYTECRL--------QKAAHFLLDDLGKDTVDFRPN------------- 156
              +   PP   R++E R             H       ++ V   P              
Sbjct: 803  RVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTTRLLFPIADDDLL 862

Query: 157  ----YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
                 +G   EP  LC   P +LVNG  GI  G +T +   N  +V+D     ID   + 
Sbjct: 863  EKKVEEGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVIDMIRRKIDLSSLV 922

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI---EKTSGDREQIVVT 269
            ++     I     P      G+  I           +  G   I   E+ +     + ++
Sbjct: 923  VNE----IP----PFYEDYKGKIEIVT-----PTKFISTGKIKISRPERKNASTFSVEIS 969

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            E+P  V  +   EK++ ++ +  I + ++   E       +    K         + L  
Sbjct: 970  ELPIGVWTSKYKEKLSNILEKLPITEFSERHTEKQVNFRLIFDRKKAARFLQKSNSDLLN 1029

Query: 330  YTSLQSLFSVNMV--ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            Y  L++  + N V    NG   E   +  I   F   R+++  +R +    +   +   +
Sbjct: 1030 YFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQKRECEAKLKYV 1089

Query: 388  VGLAIAVANLDEVVRIIR-----FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     ++ +  +        S + E+   +L +  +    +K       +  Y   
Sbjct: 1090 NNQVHLYYYMNFIELVTNGTFELKSMDRESLELKLEEIGFEVDSMKTENSKKSNYGY--- 1146

Query: 443  SDGTMYLSEVQTRAILELRLARLT--GLGRDDIRNELNSLG---IEIKECLDILSSR-SR 496
                          +LE+ L+RLT   + R   R    +L     E  +      S   +
Sbjct: 1147 --------------LLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHSELDK 1192

Query: 497  LLGIIKQELLS 507
            L   IK+    
Sbjct: 1193 LEESIKKTRKE 1203


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 93/516 (18%), Positives = 174/516 (33%), Gaps = 69/516 (13%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            ++ DE  E     +S++D +     TY       R+IP + DGLKP  R++L+      +
Sbjct: 636  LTPDETYEG---ELSLSDFIDKRLSTY-HRANNRRSIPSVFDGLKPSQRKVLYACFSSNI 691

Query: 66   EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW-----SLRLLLIEGQGNFGS 119
                K     R++GEV     + HG  ++ + +  MAQD+     ++RLL  +G      
Sbjct: 692  IGKNKKKHVDRLTGEVASVAGYHHGEKSLTETIIGMAQDFVGCGNNVRLLNPDGSFGTRL 751

Query: 120  VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              G   +A RY    ++K A  +      D  +     D  + EP+      P ++VNG 
Sbjct: 752  RGGKDHSASRYLSSFVEKIARVVFPPEDDDLYEKVFE-DNEYNEPINYIPIIPLIVVNGA 810

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T IP HN  EV       ++  +                      G  G   
Sbjct: 811  CGIGTGHSTEIPPHNPLEVCHWIRCWLEEQETP-------------KLSPWWKGFNGTTE 857

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
                    +   GV         + +  + E P  +      + +  L  +K I    D 
Sbjct: 858  VEED---KVKTFGVLE----KMSKTKWKIVETPVGLWTYDCKKHLESLETQKHIKSFEDK 910

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
              +        +I   +      I N   + ++  SL ++  +       +  T+  IL 
Sbjct: 911  YTDEKA---SFIINTTKDFIP-TIKN--LKLSTTFSLRNMTALDEKDNPVKFSTVDDILL 964

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             +   R  +  +R   +L                + ++ + +  ++        + EL  
Sbjct: 965  KYCPERLRLYQKRKDKMLADLSQEILKQANKQRFLKDVLDGILEMKQ-------QEEL-- 1015

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                      L+  ++D +Y   +    YL        + + +  LT     ++   L  
Sbjct: 1016 ----------LLQKMEDMAYDKWNGSYDYL--------IGMPIRTLTKGRLREVGEILRK 1057

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            L  +  E      S      + K EL   + +    
Sbjct: 1058 LKEKHAEL-----SERTPKEMWKSELEVFEKKYKRD 1088


>gi|15721887|dbj|BAB68393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 128

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 76/128 (59%), Positives = 99/128 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|34451797|gb|AAQ72394.1| GyrA [Klebsiella variicola]
 gi|34451799|gb|AAQ72395.1| GyrA [Klebsiella variicola]
 gi|34451801|gb|AAQ72396.1| GyrA [Klebsiella variicola]
 gi|34451809|gb|AAQ72400.1| GyrA [Klebsiella variicola]
 gi|34451811|gb|AAQ72401.1| GyrA [Klebsiella sp. 910]
          Length = 131

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 102/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|7262519|dbj|BAA92799.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 87/140 (62%), Positives = 109/140 (77%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 192 THNLGEVVDGCVAVIDNPDI 211
            HNL EV++GC+A ID+ DI
Sbjct: 121 PHNLTEVINGCLAYIDDEDI 140


>gi|69250184|ref|ZP_00605120.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
 gi|68193992|gb|EAN08552.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
          Length = 193

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 89/197 (45%), Positives = 126/197 (63%), Gaps = 6/197 (3%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 1   MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID P   LD L++I++GPD+PT A +I  R  I+  Y  GRG
Sbjct: 61  TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 121 SVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 175

Query: 307 GYRVVIELKRGASADVI 323
               ++ + R    D I
Sbjct: 176 NPTRLVIVPRSNRVDWI 192


>gi|219920999|emb|CAQ76677.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921001|emb|CAQ76678.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921003|emb|CAQ76679.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921005|emb|CAQ76680.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921007|emb|CAQ76681.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921013|emb|CAQ76684.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921015|emb|CAQ76685.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921017|emb|CAQ76686.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921019|emb|CAQ76687.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921021|emb|CAQ76688.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 101/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 84/506 (16%), Positives = 178/506 (35%), Gaps = 70/506 (13%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + ++  ++    +Y       R+IP + DGLKP  R++L+      V    K  K  R+
Sbjct: 646  DMPLSRFIKEKLSSY-HRANNRRSIPSVYDGLKPSQRKVLYACFASNVIGPSKTEKVERL 704

Query: 78   SGEVMG-KYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +G+V     + HG  ++   +  MAQ++      + L+   G++G+    G   +A RY 
Sbjct: 705  AGKVASIAGYHHGEVSLSGTIVGMAQNFVGSGNNIPLLYPDGSYGTRLRGGKDHSAARYL 764

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
                      L      D  +     D    EPV      P +LVNG  GI  G +T IP
Sbjct: 765  STYALPLTRILFPAEDDDLYERVLE-DNELNEPVNYLPILPMILVNGACGIGTGHSTEIP 823

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            +HN  ++ +     +DN +          +    P      G+  +++           +
Sbjct: 824  SHNPLDICEWIRCWLDNKE----------KPYLVPWWRGFKGKVEVED----------GK 863

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            G +        +E+  ++E P  +        +  L + K I    D   + +      V
Sbjct: 864  GRTFGILEKLSKEKWRISETPVGLWTYDCKMHLETLEKNKHIKSFEDKYTDEEA---AFV 920

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            I   +  +    ++ L + +   SL ++  +  +    +  +   IL+ +   R E+  +
Sbjct: 921  ITTTKDFTP--TMSNL-KLSKAFSLKNMTALDEDDVPVKFRSTEEILEKYCDARLELYQK 977

Query: 372  RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            R + LLN                                +   ++  ++ +    + +++
Sbjct: 978  RKEKLLN-----------------------------DLSQEIVKQANKQRFLKDVLNNVL 1008

Query: 432  DLIDDSSYTIGSDGTMYLSEVQT--RAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            ++ +     +     M   + Q     ++ + +  LT     ++   L  L         
Sbjct: 1009 NMKEQEDVLLKKMEEMNYDKWQNSFDYLVSMPIRTLTKGRLAEVGEILRKLKE-----KH 1063

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTP 515
             L S      + K+EL + + +    
Sbjct: 1064 SLLSDKSPKEMWKEELDTFEKKYKKD 1089


>gi|138999762|dbj|BAF51246.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 111/143 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  N DGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNCDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIR 221
           +D    V+DNPD+    LME++ 
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLP 144


>gi|15721889|dbj|BAB68394.1| DNA gyrase subunit A [Salmonella paratyphi]
          Length = 128

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 76/128 (59%), Positives = 99/128 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1236

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 196/539 (36%), Gaps = 58/539 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +    + + ++    ++I + +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MTKANAFQGEIDIDRSKKMLTIPEFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    E    +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLRRHSSEASKVAQLSGYISEASAFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G   AA RY   +L + A  L  +     +D+    +G+F EP       P +L
Sbjct: 761  GSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDYMDE-EGTFVEPHHYVPILPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G AT IP  +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATTIPAFHPLDVSAAVRAMINGESAKQV-MRNLVPWAVGFQGTVRRGPD 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                  A G+ +    G  HI            +EIP+  +  A    I+ L     +  
Sbjct: 879  --NEFIAVGKYTAHPNGRFHI------------SEIPWMTSIEAFRLHISSLASADVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V E      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVREGSLTTWAECETDLALAQRIYIN-------------GTVFSPT 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    +    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDSDLSPVLQWHYDRRLDLYKRRRTRKIGLMEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D ++  DD+ +       +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------QIDFLNATDDTLHKTCVKLGLVRVDESFDYILKKPITFFTRTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            ++     +I+E          L+   +     ++    + + +   +R+  + G +++ 
Sbjct: 1077 DIAKTQAQIEELKRTTPVKMWLTELDKFDKTFQEYERVLINSIQKEQRSSSITGGVELP 1135


>gi|238592069|ref|XP_002392796.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
 gi|215459345|gb|EEB93726.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
          Length = 321

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 121/314 (38%), Gaps = 31/314 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  I  +  ++ +    + +++     R+IP + DGLKP  R++++G  +      KK
Sbjct: 27  SFDHRIEEIPYSEFINKELILFSM-ADNVRSIPSVADGLKPGQRKVIWGCFKRNF---KK 82

Query: 71  YVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPP 125
            +K  ++ G V  K  + HG  ++   +  +AQD+    ++ LL+  GQ       G   
Sbjct: 83  EIKVMQLVGYVSEKAVYHHGEQSLMMTIVNLAQDFVGSNNINLLMPNGQYGTRDQGGKDH 142

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           A+ RY        A  +        +  + + +    EP       P VL+NG  GI  G
Sbjct: 143 ASARYINTLPSLMARTIFHQDDDVLLTPQKD-ENHIIEPEWYMPVLPMVLINGAEGIGTG 201

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            +TNIP +N  ++VD    +++  ++              P      G  G     +  +
Sbjct: 202 WSTNIPCYNPRDIVDNLKRLMNGEEV-------------VPMHPWWRGFKGEVKFVSKNK 248

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR--IVDIADLRDES 303
             +          T  D   + +TE+P          ++  ++  ++     I + ++  
Sbjct: 249 YDVTGIA------TKIDDSTVEITELPIHKWTQNFKAELEAMMVGEKGAEGSIKNYQEHH 302

Query: 304 DRQGYRVVIELKRG 317
             Q    VI++   
Sbjct: 303 ANQDVHFVIQMDPK 316


>gi|313600326|gb|ADR71659.1| DNA gyrase subunit A [Salmonella sp. ES-B43]
          Length = 128

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 98/128 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|34451803|gb|AAQ72397.1| GyrA [Klebsiella variicola]
 gi|34451805|gb|AAQ72398.1| GyrA [Klebsiella variicola]
 gi|34451807|gb|AAQ72399.1| GyrA [Klebsiella variicola]
          Length = 130

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/130 (62%), Positives = 101/130 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIA 120

Query: 184 VGMATNIPTH 193
           VGMATNIP H
Sbjct: 121 VGMATNIPPH 130


>gi|219921027|emb|CAQ76691.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/129 (62%), Positives = 99/129 (76%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD 
Sbjct: 3   MIWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDS 62

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAV
Sbjct: 63  AAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAV 122

Query: 185 GMATNIPTH 193
           GMATNIP H
Sbjct: 123 GMATNIPPH 131


>gi|219921009|emb|CAQ76682.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921011|emb|CAQ76683.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 101/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/595 (15%), Positives = 199/595 (33%), Gaps = 114/595 (19%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                 ++ G   + I++ +    + ++I     R+IP + DGLK   R+IL+   +  + 
Sbjct: 781  PGTYLDQYGAKKIKISEFINKELILFSI-ADCERSIPSIVDGLKISQRKILYSCFKRNL- 838

Query: 67   WNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
              KK ++ A++ G V     + HG A++   +  MAQD+  S  +  +   G+FGS    
Sbjct: 839  --KKELRVAQLIGYVSEHSAYHHGEASLASTIINMAQDYVGSNNINTLYPSGSFGSRLQG 896

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   +  RY    L+     L      + + +  N DG   +P       P VLVNG  G
Sbjct: 897  GKDSSQPRYIHTCLRDITRTLFHQDDDNLLTYV-NDDGKKVQPKWYMPTIPFVLVNGSSG 955

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +++IP +N  +++     ++D  ++                         IK  Y
Sbjct: 956  IGTGYSSSIPNYNPRDLIQCMRDLLDEKEMT-----------------------DIKPWY 992

Query: 242  ATGRGSIVIRG----VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA------------ 285
               RGSI  +     +           ++ VTE+P      +  E +             
Sbjct: 993  RGFRGSIEPKSHQTYLCKGAWKKLSEYELEVTELPIGTWTQSFKELLELLVDPDLKVKRK 1052

Query: 286  ---ELVREKR--------------------------------------IVDIADLRDESD 304
               E     +                                      ++ +        
Sbjct: 1053 VEKEQRTAMKASEKGKKIITKGKKPASAASKKKKKSNDSDDDDDVNVGLIPVVKKFQNYS 1112

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             +     +        ++ + ++++ T+  +  ++ +   +G   +  T   I+K F   
Sbjct: 1113 TEAVIHFVITTVKPVDEIDVEKVFKLTTNLNETNMTLFDEHGVLRKYDTTSSIIKIFFTL 1172

Query: 365  REEVVVRRTKYLLNKARD------------RAHVLVGLAIAVANLDEVV------RIIRF 406
            R +    R  YL++K  +            +A +   L IA     +++      +  +F
Sbjct: 1173 RLQHYQMRKDYLISKLTEEFSRLSNRARFIQAVITKELVIANVKKIDLIKKLKDMKFDKF 1232

Query: 407  SPNP-ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELR 461
            + N  + A+ +L  +       ++L+    D              +         +L + 
Sbjct: 1233 TKNATKAAKGKLDSKKSKTEQEEELLGEESDDEGGANKSDAEEEEQDDDTKGYDYLLSMP 1292

Query: 462  LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
            L  LT      I  E +    E+ + +    ++      +K     +  + +  R
Sbjct: 1293 LWSLTMERAKKILEERDQKKGELDKMVGTPINKIY-KNDLKTLEEELDIQDEDDR 1346


>gi|34451813|gb|AAQ72402.1| GyrA [Enterobacter sp. B5R5]
          Length = 130

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 101/130 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH L+ DL K+TVD+  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDYVDNYDGTERIPDVMPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTH 193
           VGMATNIP H
Sbjct: 121 VGMATNIPPH 130


>gi|48425718|pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
          Length = 312

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 152/365 (41%), Gaps = 61/365 (16%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           + +E++VV ++  G++KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   
Sbjct: 5   MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMI 64

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G +Y    + +   S  ++G+ +  +++L   E I TI      +   ++ Y++  T
Sbjct: 65  SNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTT 121

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G + R + +DF  +   G I +KL+ +D + S E   ++  ++  +K G    F    
Sbjct: 122 ASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRD 181

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R+   R + GV G+ L +GD  + +  V        +   Y+  +S        +  +I
Sbjct: 182 VRL-TNRGTQGVCGMKLKEGDLFVKVLSV--------KENPYLLIVSENGYGKRLNMSKI 232

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSGKGIRATD 831
           + LK  +                                T    ++ S  ++G  + A  
Sbjct: 233 SELKRGA--------------------------------TGYTSYKKSDKKAGSVVDAIA 260

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           VS+ +EI               +LVS +   +R    ++    +  +G+ +     ++ +
Sbjct: 261 VSEDDEI---------------LLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSL 304

Query: 892 VSVER 896
           VSV +
Sbjct: 305 VSVSK 309



 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L  KE  ++ +++KGF KR S  ++++    GKG+ + D++  +E   +V    VN 
Sbjct: 1   MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE---IVIALCVNT 57

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
           +D + ++S++G L  +   EI+ +SRA+KG     + +    E +++++     ++ D+A
Sbjct: 58  HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIK--NSKDLTDDA 115



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +EN +++ TK G   R   +  ++       G+    L  GD+++    V   D   
Sbjct: 4   LMQKENIVVMLTKKGFLKRLSQNEYKLQGT-GGKGLSSFDLNDGDEIVIALCVNTHDYLF 62

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 63  MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 122

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R    I      K+N+   + +   V  ++++I +S KG+   
Sbjct: 123 SGKIARFESTDFKAVKSRGVIVI------KLNDKDFVTSAEIVFKDEKVICLSKKGSAFI 176

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 177 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 212


>gi|219815943|gb|ACL37058.1| GyrA [Salmonella enterica]
          Length = 104

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 87/104 (83%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 104


>gi|301166553|emb|CBW26129.1| putative DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 480

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 119/506 (23%), Positives = 200/506 (39%), Gaps = 62/506 (12%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E     + S+ + D ++  Y TY I  ++ RAIP L+DGLKP  RRILF + +     +
Sbjct: 2   EETYLHSMESIPLEDIVREEYRTYQIYTLMDRAIPYLKDGLKPGQRRILFTLWKN---QS 58

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD--WSLRLLLIEGQGNFGSVDGDPPA 126
           K  +K +  +G V+   HPHG A++  A+  MAQD  +S    LI+ +G FG      PA
Sbjct: 59  KGLMKVSSATGLVL-TLHPHGPASVESAIVNMAQDYTFSNNYPLIDKKGYFGERMETSPA 117

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY EC+L K +  LL D   D V+  PNYD    EPV L  + P +L+NG  GI  G 
Sbjct: 118 ASRYIECKLGKISQILLFD-DMDQVEMVPNYDEKVMEPVNLLPKLPLMLLNGAEGIGTGF 176

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ IP+ +  EV++  ++ +++       L     G + P      GR      +    G
Sbjct: 177 SSVIPSFSHKEVINSMISFLESGKA--KKLKPFSNGFNLPIERDQRGRLIFNMGFEEVDG 234

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            I I                   E+P   +   + + + + +    I D  D   ++D  
Sbjct: 235 KIYIN------------------ELPRGYDAQKIYKYLTKYIEADFIKDFVDSTVDND-- 274

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              V IEL     A+  L ++ +     S    N   ++      F     +    + + 
Sbjct: 275 ---VRIELIFKRGAEKSLEEVEKEMGTASTQVPNYTLISERGVRIFDKPEEIIEIFSGQR 331

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             VV+R +Y L     +  +     I      +   +   S N ++    L ++ +  SD
Sbjct: 332 LAVVKR-RYELRCQGLKDKIQQNNEIIKFIKKKEYEVATKSKNRKSFVEYLTKKKFVYSD 390

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                         + ++ + R+T          +      + E
Sbjct: 391 -----------------------------YLADMPIYRMTKEEVAKRALMVKDDTKLLAE 421

Query: 487 CLDILSSRSRLLGIIKQELLSVKDEL 512
              I  S   +   + +EL  V D+L
Sbjct: 422 YTKIAKSDKLIKKKLIEELKDVGDQL 447


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent virus]
          Length = 1113

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 88/506 (17%), Positives = 185/506 (36%), Gaps = 69/506 (13%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +   + +  + I+D M +  + ++      R++    DG K   R+I++ + +     + 
Sbjct: 665  DHHREAVIDLKISDFMHHEMIKFS-YEDCRRSLASCIDGFKESQRKIIYAVRKKFRSNST 723

Query: 70   KYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDP 124
            +++K A++SG V  +  + HG   + + + + AQD+  +  + L+E  G FG+    G  
Sbjct: 724  EFIKVAQLSGYVAEQTDYKHGEQNLCETIVKFAQDFVGANNVQLLEPDGQFGTRLEGGKD 783

Query: 125  PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
             AA RY   +  K   ++  +     ++       S  EPV      P VLVNG  GI  
Sbjct: 784  SAAPRYIYTKPHKILPYIFREEDDPILEQS-----SEGEPVHFVPIIPLVLVNGSVGIGT 838

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
            G +  +P +N  E++    A + +   D +AL+        P        TG   A  TG
Sbjct: 839  GWSCFVPQYNPLELIRYIEARLTSQ--DSEALL--------PAKPWYRNFTGKVAA--TG 886

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
             G     G         D + + VTE+P  +      ++   L+   ++     L +ES 
Sbjct: 887  PGKFTTFGR----MKQVDADTVRVTELPVGMWTDRFKDQCYSLIESGQLQ---QLVNEST 939

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                   ++  +  SA          T+     ++ +        +  T+  IL  +   
Sbjct: 940  VSKVDFTLKKLQDISALK-------LTTTLHTTNMVLFDRENVITKYDTIGDILDHYFQT 992

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            R      R  + + + ++                    I       +   + L   S+  
Sbjct: 993  RLAFYKVRKNHTIAQLKNT-------------------IQHNETKLKFIEKVLTDHSFLR 1033

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D   ++ +++  ++    +   YL        L + +   T    + +++ +  L    
Sbjct: 1034 QDDAAIVSILEKENFLKVDNSYNYL--------LNISIRSCTATAVEKLQSTIKGLTES- 1084

Query: 485  KECLDILSSRSRLLGIIKQELLSVKD 510
               + +  + +R +     EL  +K 
Sbjct: 1085 --LIRVQQTPTRQM--WYDELQQLKQ 1106


>gi|309753210|gb|ADO85628.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYYTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|260890949|ref|ZP_05902212.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859502|gb|EEX74002.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 196

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 53/245 (21%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           F  I ++GK A+KL+  DE++ +   +   E+++   T+ G  +RF    +R      + 
Sbjct: 2   FDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSMGT-GAA 60

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI+L   D+++  AI+                                         
Sbjct: 61  GVKGITLRDKDKIVGAAIINS--------------------------------------- 81

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                    E+   E  ILT++E+G+GKRT   ++R+++R GKGI    ++  ++ G +V
Sbjct: 82  ---------EMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLN--DKTGKIV 130

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            V  V +ND+I+L++ +GTLIR  VN + +  R+  GV I     +E++ SV +I E   
Sbjct: 131 DVKIVTENDEIMLITSEGTLIRTSVNNVSVIGRSASGVRIMKVRNNEKIASVVKITEEPE 190

Query: 903 VDEAE 907
           + E E
Sbjct: 191 LSEDE 195



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 84/193 (43%), Gaps = 10/193 (5%)

Query: 565 GRSGVVMRDEDFVTDLFIVS--THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G+  + + D+D V  + + S  +   V   +  G   +     +      A G   +  +
Sbjct: 9   GKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSMGTGAAG---VKGI 65

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +L   ++I         E + + + ++  T+ G  +R KLS++   +R GK  +     D
Sbjct: 66  TLRDKDKIVGA-AIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLND 124

Query: 683 ---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              +I+ V+  T+ ++I+L T  G  +R  ++ + V   R++ GVR + +   +++ S+ 
Sbjct: 125 KTGKIVDVKIVTENDEIMLITSEGTLIRTSVNNVSVIG-RSASGVRIMKVRNNEKIASVV 183

Query: 740 IVLHADADYDERI 752
            +       ++  
Sbjct: 184 KITEEPELSEDEQ 196



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIV 583
             + + +    E  ++T++  GY KR  LS YR   RGGKG     + D+   + D+ IV
Sbjct: 76  AAIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLNDKTGKIVDVKIV 135

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           + +  ++  +S G + +  V  + +    A G   + I+ +   E+I +++   E+    
Sbjct: 136 TENDEIMLITSEGTLIRTSVNNVSVIGRSASG---VRIMKVRNNEKIASVVKITEEPELS 192

Query: 644 NN 645
            +
Sbjct: 193 ED 194


>gi|309753206|gb|ADO85626.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 80/106 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IY+ L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|321268264|gb|ADW78940.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 261

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 21/230 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 45  GQHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         D+  +YDG   EP  L  ++P +L +G  
Sbjct: 155 TGDSAAASRYIEARLSKFA--LEVLYSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           GIAVG++T +  HN  E++D  + ++      +         PDF T  +
Sbjct: 213 GIAVGLSTKVLPHNFNELIDASIKILKGKPFTI--------YPDFQTAGI 254


>gi|309753204|gb|ADO85625.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 80/106 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|321268280|gb|ADW78948.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 21/230 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 45  GQHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         D+  +YDG   EP  L  ++P +L +G  
Sbjct: 155 TGDSAAASRYIEARLSKFA--LEVLYSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           GIAVG++T +  HN  E++D  + ++      +         PDF T  +
Sbjct: 213 GIAVGLSTKVLPHNFNELIDASIKILKGKPFTI--------YPDFQTAGI 254


>gi|259157367|gb|ACV96843.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 129

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/128 (61%), Positives = 99/128 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPP 120

Query: 193 HNLGEVVD 200
           HNL EV++
Sbjct: 121 HNLTEVIN 128


>gi|219921023|emb|CAQ76689.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/131 (61%), Positives = 100/131 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  G 
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGX 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|325663390|ref|ZP_08151840.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470844|gb|EGC74074.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 214

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 56/244 (22%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++  ++D+  + ++G  A+ L   DE++ V+    E DI++ TK GQC+RF    +R  
Sbjct: 1   MKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS- 59

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR S+GVRG++L+                                              
Sbjct: 60  TGRTSMGVRGMNLSD--------------------------------------------- 74

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                     E    +L  +  ++L  SEKG GKRT+  +F   NR GKG++   +++  
Sbjct: 75  --------RDEVIGMQLHTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE-- 124

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G ++ V  VN++++I++++ +G +IR+    I I  R   GV + +   + +V S+ +
Sbjct: 125 KTGNVIGVKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAK 184

Query: 897 IRES 900
           +RE+
Sbjct: 185 VRET 188



 Score = 64.9 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 95/225 (42%), Gaps = 15/225 (6%)

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K+ P++ Y   R+   G + + +R++D + ++ I      ++  +  G   + K   + 
Sbjct: 1   MKKTPITDYANVRKT--GLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVR 58

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                + G   +N+   ++ E I   +    D       Y++ A++ G  +R  + +F  
Sbjct: 59  STGRTSMGVRGMNLS--DRDEVIGMQLHTQGD-------YLLIASEKGMGKRTAIEEFTC 109

Query: 668 INRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            NR GK        ++   ++ V+   ++N+I++    G  +R   + I +   R + GV
Sbjct: 110 QNRGGKGVKCYKITEKTGNVIGVKAVNEDNEIMIINTEGIVIRMECAGISILG-RVASGV 168

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + I+L    +V S+A V    A+ +         +     +  +T
Sbjct: 169 KLINLDSNTKVASIAKVRETVAEENAEEKAEVEEAGSEESLELET 213



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 6/185 (3%)

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           I +    R TGL    +R +   + ++I +    +   ++    I+ +   V+    T  
Sbjct: 6   ITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRSTGRTSM 65

Query: 517 --RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
             R   +    ++       + D ++  S  G  KR  +  +  Q RGGKG     + ++
Sbjct: 66  GVRGMNLSDRDEVIGMQLHTQGDYLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITEK 125

Query: 575 -DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
              V  +  V+    ++  ++ G V + +   + I    A G  LIN   L+   ++ +I
Sbjct: 126 TGNVIGVKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLIN---LDSNTKVASI 182

Query: 634 MPFPE 638
               E
Sbjct: 183 AKVRE 187


>gi|309753212|gb|ADO85629.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|321268282|gb|ADW78949.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 21/230 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 45  GQHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         D+  +YDG   EP  L  ++P +L +G  
Sbjct: 155 TGDSAAASRYIEARLSKFA--LEVLYSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           GIAVG++T +  HN  E++D  + ++      +         PDF T  +
Sbjct: 213 GIAVGLSTKVLPHNFNELIDASIKILKGKPFTI--------YPDFQTAGI 254


>gi|321268266|gb|ADW78941.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268268|gb|ADW78942.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268270|gb|ADW78943.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268272|gb|ADW78944.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268274|gb|ADW78945.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268276|gb|ADW78946.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268278|gb|ADW78947.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268284|gb|ADW78950.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 262

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 21/230 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 45  GQHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         D+  +YDG   EP  L  ++P +L +G  
Sbjct: 155 TGDSAAASRYIEARLSKFA--LEVLYSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           GIAVG++T +  HN  E++D  + ++      +         PDF T  +
Sbjct: 213 GIAVGLSTKVLPHNFNELIDASIKILKGKPFTI--------YPDFQTAGI 254


>gi|194354444|gb|ACF54720.1| gyrase A [Mycobacterium tuberculosis]
          Length = 156

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 106/156 (67%), Gaps = 4/156 (2%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVG
Sbjct: 1   AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 60

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAY 241
           MATNIP HNL E+ D     ++N D D +     +M  ++GPDFPT  +I+G  G  +AY
Sbjct: 61  MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAY 120

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN 
Sbjct: 121 KTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNH 156


>gi|309753208|gb|ADO85627.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|219921029|emb|CAQ76692.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 127

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/126 (62%), Positives = 99/126 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 120

Query: 195 LGEVVD 200
           L EV++
Sbjct: 121 LTEVIN 126


>gi|258611538|ref|ZP_05711544.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
 gi|258601051|gb|EEW14376.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
          Length = 334

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 159/392 (40%), Gaps = 64/392 (16%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
               + ++ E  +  ED++V+V+  GYVKR     Y A          + M++ D    +
Sbjct: 4   EIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAIFI 58

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPED 639
             +++  S+L F+S G      V  LP    +  G  + ++ S L+ GE I + +     
Sbjct: 59  QKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAI--- 115

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILL 698
           ++       +F TK+G  +++ ++++         +A+KL   DE+LSV       DI L
Sbjct: 116 QAFTEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFL 175

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            TK G  +R+ I+ I     R + GV+ I+L + D VI   ++                 
Sbjct: 176 ATKNGYGLRYSITEIPESGARTA-GVKAINLKQDDIVIGGIVL----------------- 217

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                             +  +++ IL  +++G  K+  + +F 
Sbjct: 218 ----------------------------------MLNEQKHILLATQRGSLKQMKASEFE 243

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ +G+      K N     + +   ++ND + + ++   ++ + V  +RI  R + 
Sbjct: 244 PISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSN 302

Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G  +     +    S+  +   EI D +++ E
Sbjct: 303 GSFVLDETMEGEPTSIW-LAIPEIKDTSDAKE 333


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
            [Crithidia fasciculata]
          Length = 1239

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 100/545 (18%), Positives = 192/545 (35%), Gaps = 58/545 (10%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            M++ +    + + ++    ++I D +    + +A+ V   RAIP   DGLKP  R+IL+ 
Sbjct: 644  MSKANAFQGEVDIDRSKKLLTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            M++       K  + +    EV   +H  G A++ + + +MAQ+++    + L+  +G F
Sbjct: 703  MLKRHSSEAAKVAQLSGYISEVSSFHH--GEASLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +     +D+    +G+  EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARLLFPEDDDPLLDYIDE-EGTMVEPNHYVPILPLLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G ATNIP+ +  +V     A+I+        +  ++       G V  G  
Sbjct: 820  CNGAVGIGFGFATNIPSFHPLDVSAAVRAMINGESAKQV-VRNLVPWAVGFQGTVRRGPE 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              K   A G+ +    G  H+            +E+P+  +  A    I+ L     +  
Sbjct: 879  --KEYIAVGKYTAHRNGRLHV------------SELPWMTSIEAFRSHISSLASSDVVQR 924

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    +      +V E      A+   +         +                F+  
Sbjct: 925  IADYSGANHIDIDLIVREGSMTTWAECETDLALSQRIYIN-------------GTVFSPD 971

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            G L    A    V+       L+  + R    +GL        ++ R+       E  R+
Sbjct: 972  GTLSPIDADLSPVLQWHYDRRLDLYKRRRTRQIGLLEM-----DLARLQSTRKFVEHFRQ 1026

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         D +   DD+         +   +     IL+  +   T    + ++ 
Sbjct: 1027 G----------HIDFLAATDDTLTKTCVKLGLVRVDDGYDYILKKPITFYTKTSTEKLQA 1076

Query: 476  ELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
            ++      I            L+   +     ++    +   +   +R   + G  ++  
Sbjct: 1077 DIKKTQDSIAVLKQTTPVKMWLTDLDKFDKTFQEYERVLIHSIQKEQRPASITGGEEVPA 1136

Query: 530  EDCIV 534
                 
Sbjct: 1137 LRQPP 1141


>gi|82408805|gb|ABB73196.1| DNA gyrase [Listonella anguillarum]
 gi|82408807|gb|ABB73197.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/127 (59%), Positives = 97/127 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 174 VLVNGGG 180
           +LVNG  
Sbjct: 121 LLVNGSS 127


>gi|172073096|gb|ACB71405.1| ParC [Escherichia coli]
          Length = 130

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 1/125 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 62  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 121

Query: 136 QKAAH 140
            K + 
Sbjct: 122 SKYSE 126


>gi|71902126|ref|ZP_00684158.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71728115|gb|EAO30314.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 352

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 125/318 (39%), Gaps = 26/318 (8%)

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
           ++            LS+ QT  IL+ +L +L  L    IR+E ++L  E  E   IL S 
Sbjct: 7   NEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVILDSD 66

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +L  +IK ELL+        RR  +V  +    +++ + +  E M V +S  G++    
Sbjct: 67  VQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWI---- 122

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               RA +      SG+  R+ D +       +   V F  S G  Y   V  LP  S +
Sbjct: 123 ----RAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLP--SAR 176

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L    S   G     +       S+ N+   V A+ HG     +  +    N++G
Sbjct: 177 GNGEPLTGRFSPAPGASFQAM------ASADNDKLFVLASSHGYGFITRFENLTGRNKAG 230

Query: 673 KIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  + L    +++ +   T    + I+  T  G  +    S +         G + I + 
Sbjct: 231 KAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELD--KGKGNKLIDIP 288

Query: 731 K----GDQVISMAIVLHA 744
           K     ++++++  V  +
Sbjct: 289 KTKLATERLVAVIAVASS 306


>gi|184161295|gb|ACC68679.1| ParC [Escherichia coli]
          Length = 128

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/124 (45%), Positives = 86/124 (69%), Gaps = 1/124 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR 
Sbjct: 1   RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 60

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQ 136
            G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL 
Sbjct: 61  VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 120

Query: 137 KAAH 140
           K + 
Sbjct: 121 KYSE 124


>gi|172073098|gb|ACB71406.1| ParC [Escherichia coli]
          Length = 126

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 86/123 (69%), Gaps = 1/123 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           G+V+GKYHPHG++A Y A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K
Sbjct: 61  GDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 138 AAH 140
            + 
Sbjct: 121 YSE 123


>gi|15278103|gb|AAK94038.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 128

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 92/127 (72%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   D
Sbjct: 2   GFRPDRSHAKSARSVAEAMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIA
Sbjct: 62  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 121

Query: 184 VGMATNI 190
           VGMATNI
Sbjct: 122 VGMATNI 128


>gi|16041050|dbj|BAB69702.1| topoisomerase IV [Salmonella paratyphi]
          Length = 126

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 87/123 (70%), Gaps = 1/123 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K
Sbjct: 61  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 138 AAH 140
            A 
Sbjct: 121 YAE 123


>gi|15787866|dbj|BAB68536.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 131

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 86/123 (69%), Gaps = 1/123 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  
Sbjct: 1   LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K
Sbjct: 61  GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120

Query: 138 AAH 140
            A 
Sbjct: 121 YAE 123


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 99/530 (18%), Positives = 184/530 (34%), Gaps = 62/530 (11%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +  + + + ++    +++TD +    + +A+ V   RA+    DGLKP  R+I++ 
Sbjct: 640  MTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGN 116
               +      +  K A++SG +       HG  ++ + + +MAQ ++    + L+  +G 
Sbjct: 699  ---LMRRSGNEAAKVAQLSGYISEASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQ 755

Query: 117  FGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FGS    G+  AA RY   +L K A  L        +D+    +G   EP       P +
Sbjct: 756  FGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYIVE-EGQQVEPNHYVPILPLL 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            L NG  GI  G A+NIP  +  +V     A+I              +          +G 
Sbjct: 815  LCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAA---------KSVVRRLVPWAVGF 865

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             G         G  +  G        G R  + VTE+P+  +  A  E I+ L  +  + 
Sbjct: 866  QG--EIRRGPEGEFIAVGTYT--YCKGGR--VHVTELPWTCSVEAFREHISYLATKDIVN 919

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
             IAD    S      + +E+ +GA         Y     +   +  +           TL
Sbjct: 920  RIAD---YSGANHVDIDVEVAQGAV------NTYAECESELGLTQRIHINGTVFSPNGTL 970

Query: 355  IGILKAFVAFREEVVVRRT-KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
              +        +    RR   Y   + R+   +   LA   + L  V        +   A
Sbjct: 971  SPLESDLTPVLQWHYDRRLDLYKKRRQRNLMLLEQELAREKSTLKFVQHFRAGHIDFANA 1030

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                +++  +      L+ + D   Y +    T Y                 T    +++
Sbjct: 1031 TEATLEKVCSK---LGLVRVDDSFDYILRKPITFY-----------------TKTSFENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              ++      I+           L    +     +     + + +   RR
Sbjct: 1071 LKKIAETERRIEALKKTTPVQLWLGELDQFDRFFQDHEKKMVEAILKERR 1120


>gi|296005999|gb|ADG65216.1| gyrase subunit A [Mycobacterium tuberculosis]
          Length = 105

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 77/103 (74%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           Y+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPH
Sbjct: 1   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           G+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYT 103


>gi|161705231|gb|ABX76740.1| ParC [Escherichia coli]
          Length = 134

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 85/125 (68%), Gaps = 1/125 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 66  TVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125

Query: 136 QKAAH 140
            K + 
Sbjct: 126 SKYSE 130


>gi|296085402|emb|CBI29134.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 77/131 (58%), Positives = 100/131 (76%), Gaps = 3/131 (2%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y KCAR+ GEV+GK+HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA---AHFLLDDL 146
           + A+YD+L RMAQD+SLR  LI+G GNFGSVD DPPAA RYTECRL+      +  L+ +
Sbjct: 61  DTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEVIRLFLNLFLNLV 120

Query: 147 GKDTVDFRPNY 157
           G+    F  +Y
Sbjct: 121 GQVNTRFLDHY 131


>gi|296253498|gb|ADH04210.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 170 RYPNVLVNGGGGIAVGMAT 188
           R P++L+NG  GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|313635489|gb|EFS01727.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 112

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 84/110 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGS
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGS 112


>gi|47094489|ref|ZP_00232164.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|47017134|gb|EAL07992.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
          Length = 334

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 159/389 (40%), Gaps = 64/389 (16%)

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
            + ++ E  +  ED++V+V+  GYVKR     Y A          + M++ D    +  +
Sbjct: 7   EIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAIFIQKM 61

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESS 642
           ++  S+L F+S G      V  LP    +  G  + ++ S L+ GE I + +     ++ 
Sbjct: 62  NSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAI---QAF 118

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                 +F TK+G  +++ ++++         +A+KL   DE+L+V       DI L TK
Sbjct: 119 TEEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATK 178

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  +R+ I+ I     R + GV+ I+L + D VI   +++  +                
Sbjct: 179 NGYGLRYSITEIPESGARTA-GVKAINLKQDDIVIGGIVLMPNE---------------- 221

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                              ++ IL  +++G  K+  + +F   +
Sbjct: 222 -----------------------------------QKHILLATQRGSLKQMKASEFEPIS 246

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R+ +G+      K N     + +   ++ND + + ++   ++ + V  +RI  R + G  
Sbjct: 247 RAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSF 305

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
           +     +    S+  +   EI D +++ +
Sbjct: 306 VLDETMEGEPTSIW-LAIPEIKDTSDAKD 333


>gi|172073100|gb|ACB71407.1| ParC [Escherichia coli]
          Length = 130

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 57/125 (45%), Positives = 86/125 (68%), Gaps = 1/125 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNTSAKFKKSAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL
Sbjct: 62  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 121

Query: 136 QKAAH 140
            K + 
Sbjct: 122 SKYSE 126


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1221

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 99/530 (18%), Positives = 184/530 (34%), Gaps = 62/530 (11%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +  + + + ++    +++TD +    + +A+ V   RA+    DGLKP  R+I++ 
Sbjct: 640  MTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGN 116
               +      +  K A++SG +       HG  ++ + + +MAQ ++    + L+  +G 
Sbjct: 699  ---LMRRSGNEAAKVAQLSGYISEASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQ 755

Query: 117  FGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FGS    G+  AA RY   +L K A  L        +D+    +G   EP       P +
Sbjct: 756  FGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYIVE-EGQQVEPNHYVPILPLL 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            L NG  GI  G A+NIP  +  +V     A+I              +          +G 
Sbjct: 815  LCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISGEAA---------KSVVRRLVPWAVGF 865

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             G         G  +  G        G R  + VTE+P+  +  A  E I+ L  +  + 
Sbjct: 866  QG--EIRRGPEGEFIAVGTYT--YCKGGR--VHVTELPWTCSVEAFREHISYLATKDIVN 919

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
             IAD    S      + +E+ +GA         Y     +   +  +           TL
Sbjct: 920  RIAD---YSGANHVDIDVEVAQGAV------NTYAECESELGLTQRIHINGTVFSPNGTL 970

Query: 355  IGILKAFVAFREEVVVRRT-KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
              +        +    RR   Y   + R+   +   LA   + L  V        +   A
Sbjct: 971  SPLESDLTPVLQWHYDRRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFRAGHIDFANA 1030

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                +++  +      L+ + D   Y +    T Y                 T    +++
Sbjct: 1031 TEATLEKVCSK---LGLVRVDDSFDYILRKPITFY-----------------TKTSFENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              ++      I+           L    +     +     + + +   RR
Sbjct: 1071 LKKIAETERRIEALKKTTPVQLWLGELDQFDRFFQDHEKKMVEAILKERR 1120


>gi|296253496|gb|ADH04209.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/139 (52%), Positives = 99/139 (71%), Gaps = 1/139 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y A+  MAQ +S R  L
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 170 RYPNVLVNGGGGIAVGMAT 188
           R P++L+NG  GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|157311570|ref|YP_001469613.1| DNA topisomerase II medium subunit [Enterobacteria phage Phi1]
 gi|149380774|gb|ABR24779.1| gp52 topoisomerase II medium subunit [Enterobacteria phage Phi1]
          Length = 448

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 173/499 (34%), Gaps = 54/499 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ 
Sbjct: 2   NKSVTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A I   V    + HG     +A + MA  WS    L++GQGNFGS       A RY  
Sbjct: 62  KMADIGSGVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIF 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +    +  D+         + D     P       P VL NG  GIA G  T+I  
Sbjct: 122 ARVHENFFKIYKDMNCAP----KHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILP 177

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H+L  +++ C  +     +D +  ++  +      G VI             R  +++ G
Sbjct: 178 HSLESLIE-CTELALAGKLDKEPSVQFPKFT----GKVIP---------RDDRDGVILEG 223

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD-LRDESDRQGYRVV 311
              +      +  + ++E+PY+ ++   +  +  L  +  IV   D    +  R    + 
Sbjct: 224 TYEL----NGKTTLTISEVPYKFDREEYVAVLDALEEKDLIVSYNDRCSKDGFRFEVTLK 279

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +  +         ++ +   L  L + N+V +N        L+ + +            
Sbjct: 280 RDYFKSEDESARHEKIMKDFKLTQLVAQNIVVVNER-----GLVEVFEKASDL------- 327

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
                    R    + +G       L +   +  +  N   A+ E + R           
Sbjct: 328 --------IRRFVEIRLGYVDKRIELMQAETLEAY--NYAMAKAEFIDRVIKGEIELQGK 377

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
              +     + S             ++ + L  +T    D +  +      E +      
Sbjct: 378 KKAE----VMQSINGHEKLRPYADKLVSMPLYSVTQEEYDRLVKDAEKHHSEYEYWTKTT 433

Query: 492 SSRSRLLGIIKQELLSVKD 510
           +     +   K++L  +K 
Sbjct: 434 A-----MKEYKKDLKELKK 447


>gi|82408809|gb|ABB73198.1| DNA gyrase [Listonella anguillarum]
 gi|82408811|gb|ABB73199.1| DNA gyrase [Listonella anguillarum]
 gi|82408813|gb|ABB73200.1| DNA gyrase [Listonella anguillarum]
 gi|82408815|gb|ABB73201.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 76/127 (59%), Positives = 96/127 (75%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 174 VLVNGGG 180
           +LVNG  
Sbjct: 121 LLVNGSS 127


>gi|296253492|gb|ADH04207.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253500|gb|ADH04211.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253504|gb|ADH04213.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 99/139 (71%), Gaps = 1/139 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 170 RYPNVLVNGGGGIAVGMAT 188
           R P++L+NG  GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|219921025|emb|CAQ76690.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 124

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 77/123 (62%), Positives = 95/123 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 2   YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 62  TEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 121

Query: 191 PTH 193
           P H
Sbjct: 122 PPH 124


>gi|321268262|gb|ADW78939.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 238

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/200 (40%), Positives = 112/200 (56%), Gaps = 13/200 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +H   ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI   M 
Sbjct: 45  GQHFYENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRI---MH 99

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A + G  M  YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++ 
Sbjct: 100 SLKELDDGRYNKVANVVGHTMQ-YHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNIL 154

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  L         D+  +YDG   EP  L  ++P +L +G  
Sbjct: 155 TGDSAAASRYIEARLSKFA--LEVLYSPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAE 212

Query: 181 GIAVGMATNIPTHNLGEVVD 200
           GIAVG++T +  HN  E++D
Sbjct: 213 GIAVGLSTKVLPHNFNELID 232


>gi|296253502|gb|ADH04212.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 98/139 (70%), Gaps = 1/139 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 170 RYPNVLVNGGGGIAVGMAT 188
           R P++L+NG  GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|49532809|dbj|BAD26642.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 99/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++Y A+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYYAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|261871068|gb|ACY02503.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 96/124 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVD 200
           EV++
Sbjct: 121 EVIN 124


>gi|261871064|gb|ACY02501.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 96/124 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVD 200
           EV++
Sbjct: 121 EVIN 124


>gi|49532775|dbj|BAD26625.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532777|dbj|BAD26626.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532779|dbj|BAD26627.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532781|dbj|BAD26628.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532783|dbj|BAD26629.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532787|dbj|BAD26631.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532789|dbj|BAD26632.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532793|dbj|BAD26634.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532795|dbj|BAD26635.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532797|dbj|BAD26636.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532805|dbj|BAD26640.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532807|dbj|BAD26641.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/132 (56%), Positives = 101/132 (76%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+A++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDASVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|261871070|gb|ACY02504.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/124 (62%), Positives = 98/124 (79%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVD 200
           EV++
Sbjct: 121 EVIN 124


>gi|49532769|dbj|BAD26622.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532771|dbj|BAD26623.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532773|dbj|BAD26624.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532785|dbj|BAD26630.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532799|dbj|BAD26637.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532801|dbj|BAD26638.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532803|dbj|BAD26639.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532811|dbj|BAD26643.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532813|dbj|BAD26644.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532815|dbj|BAD26645.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532817|dbj|BAD26646.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532819|dbj|BAD26647.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532821|dbj|BAD26648.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 100/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|296253494|gb|ADH04208.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVHRRLIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLPA 120

Query: 170 RYPNVLVNGGGGIAVGMAT 188
           R P++L+NG  GIAVGMAT
Sbjct: 121 RLPHILLNGTTGIAVGMAT 139


>gi|261871072|gb|ACY02505.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 97/124 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 120

Query: 197 EVVD 200
           EV++
Sbjct: 121 EVIN 124


>gi|328697364|ref|XP_003240317.1| PREDICTED: DNA topoisomerase 2-like [Acyrthosiphon pisum]
          Length = 333

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 119/334 (35%), Gaps = 31/334 (9%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLL 110
           R  L  +       +K+ +K A+++G V     + HG  ++   +  +AQ++  S  + L
Sbjct: 4   RLQLHVLFTCIKRNDKREIKVAQLAGSVAEHSAYHHGEVSLMSTIVNLAQNYVGSNNINL 63

Query: 111 IEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++  G FG+    G   A+ RY    L      +        + +  + D    EPV   
Sbjct: 64  LQPIGQFGTRLQGGKDAASPRYIFTMLSPLTRLIFHPHDDPLLTYLRD-DNQKIEPVWYM 122

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
              P VLVNG  GI  G  T IP HN  EV+     ++   D            P  P  
Sbjct: 123 PIIPMVLVNGAEGIGTGWMTKIPNHNPREVISNIKRMLRGED----------PLPMKPWY 172

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
               G     +           + +S  E       ++ +TE+P  V      E + E +
Sbjct: 173 KNFTGHIEKLS---------EQKFISSGELGVIGHNRVEITELPVGVWTQNYKESVLEPM 223

Query: 289 ---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
               EK    I D ++ +     + VI +            ++++  L +   +  +   
Sbjct: 224 LTDTEKSPAVITDYKEYNTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCAF 283

Query: 346 GYKP---ERFTLIGILKAFVAFREEVVVRRTKYL 376
                  +      IL+ F A R +   +R  YL
Sbjct: 284 DKDCVLKKYEATQQILREFYAVRLDFYGKRKAYL 317


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/528 (17%), Positives = 179/528 (33%), Gaps = 87/528 (16%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
                   +  ++ + I+D +    + +++     R+IP + DG KP  R+IL+G  +  +
Sbjct: 707  FEPGVHLDPDLSIIPISDFINKELILFSM-ADNIRSIPSMLDGFKPSQRKILYGCYKRNL 765

Query: 66   EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
                K  + A   GE    +H  G+ ++  ++  +AQD+  S  L L++  G FGS    
Sbjct: 766  RSEIKVSQLAGYIGEHSAYHH--GDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQG 823

Query: 122  GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            G   +A RY    L K                                           G
Sbjct: 824  GKDASAARYIFTDLSKITKKNF----------------------------------SCQG 849

Query: 182  IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
            I  G +TNIP  N  ++V     ++D        + E+I            G  G     
Sbjct: 850  IGTGWSTNIPPFNPVDIVANIRRLMDGQ-----EMEEMIP--------WYRGWNGSITKI 896

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADL 299
            +  +     R   +IE+   D E I +TEIP +     M E +   +   EK+   I D+
Sbjct: 897  SADK----FRMEGNIEQI--DDETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM 950

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGI 357
             ++       V+   K      + +    R+  + ++   NMVA +  G   +   +  I
Sbjct: 951  EEQHGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEI 1010

Query: 358  LKAFVAFREEVVVRRTKYL-------LNK----ARDRAHVLVGLAIAVAN----LDEVVR 402
            ++ +   R +   RR  +L       L K    AR    ++             L E ++
Sbjct: 1011 IEDYYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIENELRVNNRKRIELIEELQ 1070

Query: 403  IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--RAILEL 460
             + F    +  +    Q         ++    ++       +       +      +L +
Sbjct: 1071 RLNFPKFSKDGKPIWQQVDQEEITEAEIKVEEEEEEEIDDENLLNKSVNIFASYDYLLGM 1130

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
             +  LT      +  +      ++ E L + +        I  + L V
Sbjct: 1131 PIWSLTRERYHKLLLQKAEKEDQLTELLKLSA------KQIWNKDLEV 1172


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 184/530 (34%), Gaps = 62/530 (11%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +  + + + ++    +++TD +    + +A+ V   RA+    DGLKP  R+I++ 
Sbjct: 640  MTKANAFTGEVDIDRSKKMLTVTDFVHKEMVHFAL-VGNARALAHSVDGLKPSQRKIIWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGN 116
               +      +  K A++SG +       HG  ++ + + +MAQ ++    + L+  +G 
Sbjct: 699  ---LMRRSGNEAAKVAQLSGYISEASAFHHGETSLQETMIKMAQSFTGGNNVNLLVPEGQ 755

Query: 117  FGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FGS    G+  AA RY   +L K A  L        +D+    +G   EP       P +
Sbjct: 756  FGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLDYIVE-EGQQVEPNHYVPILPLL 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            L NG  GI  G ++NIP  +  +V     A+I              +          +G 
Sbjct: 815  LCNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISGERA---------KSVVRRLVPWAVGF 865

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             G         G  +  G        G R  + VTE+P+  +  A  E I+ L  +  + 
Sbjct: 866  QG--EIRRGPEGEFIAVGTYT--YCKGGR--VHVTELPWTCSVEAFREHISYLATKDIVN 919

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
             IAD    S      + +E+ +GA         Y     +   +  +           TL
Sbjct: 920  RIAD---YSGANHVDIDVEVAQGAV------NTYAECESELGLTQRIHINGTVFSPNGTL 970

Query: 355  IGILKAFVAFREEVVVRRT-KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
              +        +    RR   Y   + R+   +   LA   + L  V        +   A
Sbjct: 971  SPLESDLTPVLQWHYDRRLDLYKKRRQRNLTLLEQELAREKSTLKFVQHFGAGHIDFANA 1030

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                +++  +      L+ + D   Y +    T Y                 T    +++
Sbjct: 1031 TEATLEKVCSK---LGLVRVDDSFDYILRKPITFY-----------------TKTSFENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              ++      I+           L    +     +     + + +   RR
Sbjct: 1071 LKKIAETERRIEALKKTTPVQLWLGELDQFDRFFQDHEKKMVEAILKERR 1120


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 186/530 (35%), Gaps = 62/530 (11%)

Query: 1    MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+    + E + ++   ++++ D +    + +A+     RA+    DGLKP  R+IL+ 
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFAL-AGNARALAHAVDGLKPSQRKILWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            +M+     + K  + +    EV   +H  G  ++ + + +MAQ+++    + L+  +G F
Sbjct: 699  IMRRSGNESAKVAQMSGYISEVSAFHH--GEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L   A  L     +  +D+    +G   EP       P +L
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G A+NIP  +  +V     ++I+     +  +  ++       G V  G  
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G     A G     + G  H+            TEIP+ ++  A  + I+ L  +  +  
Sbjct: 875  G--EFIAAGSYQYYVDGRVHV------------TEIPWTLSIEAFRDHISVLASKDVVQR 920

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    S      + +EL  GA         Y     +   +  +          F+  
Sbjct: 921  IAD---YSGANHVDIDLELTNGAM------TTYAECESELSLTQRIYI----NGTVFSPT 967

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE--VVRIIRFSPNPETA 413
            G+L         V+       L+  + R    +GL  A    ++  +  +  F       
Sbjct: 968  GVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDI 1027

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                            ++ + D   Y +    T Y                 T    +++
Sbjct: 1028 VNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFY-----------------TKTSLENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              ++      I +          L    R     ++   +    +   RR
Sbjct: 1071 NRKIGETEKRIDKLKKTTPVQMWLDELDRFDRAFEEHEKTAVATILKERR 1120


>gi|15215561|gb|AAK91512.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  
Sbjct: 63  GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 187/530 (35%), Gaps = 62/530 (11%)

Query: 1    MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+    + E + ++   ++++ D +    + +A+     RA+    DGLKP  R+IL+ 
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFAL-AGNARALAHAVDGLKPSQRKILWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            +M+     + K  + +    EV   +H  G  ++ + + +MAQ+++    + L+  +G F
Sbjct: 699  IMRRSGNESAKVAQLSGYISEVSAFHH--GEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L   A  L     +  +D+    +G   EP       P +L
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G A+NIP  +  +V     ++I+     +  +  ++       G V  G  
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G     A G     + G  H+            TEIP+ ++  A  + I+ L  +  +  
Sbjct: 875  G--EFIAAGSYQYYVDGRVHV------------TEIPWTLSIEAFRDHISVLASKDVVQR 920

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    S      + +EL  GA         Y     +   +  +          F+  
Sbjct: 921  IAD---YSGANHVDIDLELTNGAM------TTYAECESELSLTQRIYI----NGTVFSPT 967

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE--VVRIIRFSPNPETA 413
            G+L         V+       L+  + R    +GL  A    ++  +  +  F       
Sbjct: 968  GVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDI 1027

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                            ++ + D   Y +    T Y                 T    +++
Sbjct: 1028 VNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFY-----------------TKTSLENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              +++     I +          L    R     ++   +    +   RR
Sbjct: 1071 NRKISETEKRIDKLKKTAPVQMWLDELDRFDRAFEEHEKTAVATILKERR 1120


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 179/489 (36%), Gaps = 36/489 (7%)

Query: 41   AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK-YHPHGNAAIYDALAR 99
            +IP L DGLKP  R+IL+ +  +        +K ++++G V  +  + HG  ++   + R
Sbjct: 1971 SIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLAGAVAHRQSYHHGEESLVRTIIR 2028

Query: 100  MAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            M Q +  S  L L++  G FG+    G+  A+ RY    L      L      D +  + 
Sbjct: 2029 MGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLL--QK 2086

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
            N +        LC   P +L+NG  GI  G +T I   N  +++D     ID+   + + 
Sbjct: 2087 NVEEGMVVEPTLCPIVPLILINGTEGIGTGWSTKIANRNPIDIIDMIRRKIDSISTEYE- 2145

Query: 216  LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
                I     P      G+  +           +   +   E+ +     I + E+P  +
Sbjct: 2146 ----IP----PFYEEFRGKLEVVTPTKFISSGKIQ--LIRPERKNASTFSIEIVELPIGI 2195

Query: 276  NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
              +   EK++++V    +++ ++   E        +   K         + L  Y  L++
Sbjct: 2196 WTSKYKEKLSKIVETLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRT 2255

Query: 336  LFSVNMV--ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
              + N V    NG   E   +  I   F   R ++  +R K    +   +   +      
Sbjct: 2256 SLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNF 2315

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV- 452
            +  +      IR        R +L ++        D +  I  +S  +          + 
Sbjct: 2316 IEMVTNGTIEIRS-----MGRNQLEEKLQEMGFRVDPMATIAKNSKKVNLINYEDFQYLN 2370

Query: 453  -QTR--AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
             Q     +LE+ ++RLT         E  S      E     S+  +   + + EL  + 
Sbjct: 2371 FQANYGYLLEMPVSRLTS-DEMKRLEERKS--RRRTELEAAESADWK--SVWRSELDKLA 2425

Query: 510  DELDTPRRT 518
            + +   R++
Sbjct: 2426 EAVGNNRKS 2434


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 187/530 (35%), Gaps = 62/530 (11%)

Query: 1    MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+    + E + ++   ++++ D +    + +A+     RA+    DGLKP  R+IL+ 
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFAL-AGNARALAHAVDGLKPSQRKILWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            +M+     + K  + +    EV   +H  G  ++ + + +MAQ+++    + L+  +G F
Sbjct: 699  IMRRSGNESAKVAQLSGYISEVSAFHH--GEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L   A  L     +  +D+    +G   EP       P +L
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G A+NIP  +  +V     ++I+     +  +  ++       G V  G  
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G     A G     + G  H+            TEIP+ ++  A  + I+ L  +  +  
Sbjct: 875  G--EFIAAGSYQYYVDGRVHV------------TEIPWTLSIEAFRDHISVLASKDVVQR 920

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    S      + +EL  GA         Y     +   +  +          F+  
Sbjct: 921  IAD---YSGANHVDIDLELTNGAM------TTYAECESELSLTQRIYI----NGTVFSPT 967

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE--VVRIIRFSPNPETA 413
            G+L         V+       L+  + R    +GL  A    ++  +  +  F       
Sbjct: 968  GVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDI 1027

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                            ++ + D   Y +    T Y                 T    +++
Sbjct: 1028 VNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFY-----------------TKTSLENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              +++     I +          L    R     ++   +    +   RR
Sbjct: 1071 NRKISETEKRIDKLKKTTPVQMWLDELDRFDRAFEEHEKTAVATILKERR 1120


>gi|261871062|gb|ACY02500.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/124 (62%), Positives = 97/124 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVD 200
           EV++
Sbjct: 121 EVIN 124


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 99/521 (19%), Positives = 193/521 (37%), Gaps = 62/521 (11%)

Query: 1    MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+ +  + D + ++    +SI D +    + +A+     RAI    DGLKP  R+IL+ 
Sbjct: 644  MTKANAFNGDVDIDRSKKVLSIPDFVHKEMVHFAL-AGNARAIAHSVDGLKPSQRKILWA 702

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            + + G   + K  + +    EV   +H  G  ++ + + +MAQ+++    + L+  +G F
Sbjct: 703  LFKRGKAESAKVAQLSGYISEVSSFHH--GEMSLQETIVKMAQNFTGGNNINLLVPEGQF 760

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L + A  L  +  +  +D+     G+  EP       P +L
Sbjct: 761  GSRQQLGNDHAAPRYIFTKLSRFARVLFPEDDEPLLDYTEEE-GTTTEPNHYVPIIPMLL 819

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G A+NIP+++  +V     ++I+        +  ++       G V  G  
Sbjct: 820  CNGSVGIGFGFASNIPSYHPLDVSAVVRSMINGETAKQV-VKRLVPWAVGFQGTVRRGPE 878

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G     A G+ S       H+            +E+P+  +  A    I+ L     +  
Sbjct: 879  G--EFIAVGKYSAYKNNYIHV------------SELPWTTSIEAFRGHISNLANMDVVQR 924

Query: 296  IADLRDESDRQGYRVV----IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
            IAD    +      +V    +       AD+ L+Q           S  +  L G     
Sbjct: 925  IADYSGANHIDIDLIVREGSVTTWSEVEADLALSQKIYINGTVFSPSGTLAPLEGDLSPI 984

Query: 352  FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
                         +     R   Y   +AR    +   LA   +    V+   +   +  
Sbjct: 985  L------------QRHYDRRLNLYKKRRARQLGLLEHDLACLESTRKFVMHFRQGKIDFM 1032

Query: 412  TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            TA  E +Q+  +   ++ +                    + +   IL+  +   T     
Sbjct: 1033 TATDETLQKVCDRLHLQKV--------------------DAKYDYILKKPITFFTRTNTT 1072

Query: 472  DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
             + +++  L   I+E     ++ +++      +   + +E 
Sbjct: 1073 KLDDDIKKLQDSIEEMKK--TTPTKMWLRELDQFDKLFEEY 1111


>gi|49532791|dbj|BAD26633.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 100/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|323575321|dbj|BAJ78200.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575323|dbj|BAJ78201.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575325|dbj|BAJ78202.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575327|dbj|BAJ78203.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575329|dbj|BAJ78204.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575331|dbj|BAJ78205.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575333|dbj|BAJ78206.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575335|dbj|BAJ78207.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575337|dbj|BAJ78208.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575339|dbj|BAJ78209.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575341|dbj|BAJ78210.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575345|dbj|BAJ78212.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575347|dbj|BAJ78213.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575349|dbj|BAJ78214.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575351|dbj|BAJ78215.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/132 (62%), Positives = 96/132 (72%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 178 GGGGIAVGMATN 189
           G  GIAVGMATN
Sbjct: 121 GSSGIAVGMATN 132


>gi|225550344|ref|ZP_03771293.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379498|gb|EEH01860.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 143

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/135 (49%), Positives = 93/135 (68%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDL 146
           E RL K A  +L +L
Sbjct: 124 ETRLSKIASVMLTNL 138


>gi|284192203|gb|ADB82821.1| DNA gyrase subunit A [Coxiella burnetii]
          Length = 121

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 91/121 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK   K ARI G+V+GKYHPHG+ A+Y  + RMAQ +SLR LLI+GQGNFGSVDGD PA
Sbjct: 1   WNKPNKKSARIVGDVIGKYHPHGDVAVYGTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + AH L+ DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGM
Sbjct: 61  AMRYTEIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGM 120

Query: 187 A 187
           A
Sbjct: 121 A 121


>gi|10241565|emb|CAC09565.1| DNA gyrase subunit A [Parabacteroides distasonis]
          Length = 97

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/97 (57%), Positives = 80/97 (82%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K ARI G
Sbjct: 1   NIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           EV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGN
Sbjct: 61  EVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGN 97


>gi|261871066|gb|ACY02502.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 77/124 (62%), Positives = 97/124 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVD 200
           EV++
Sbjct: 121 EVIN 124


>gi|33620672|ref|NP_891840.1| topoisomerase medium subunit [Enterobacteria phage RB49]
 gi|33438555|gb|AAL15130.2| topoisomerase medium subunit [Enterobacteria phage RB49]
          Length = 454

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 178/496 (35%), Gaps = 56/496 (11%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K A 
Sbjct: 12  TYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMAD 71

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I   V    + HG     +A + MA  WS    L++GQGNFGS       A RY   R+ 
Sbjct: 72  IGSGVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVH 131

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +    +  D+         + D     P       P VL NG  GIA G  T+I  H+L 
Sbjct: 132 ENFFKIYKDMNCAP----KHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLE 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            +++ C  +     +D +  ++  +      G VI             R  +++ G   +
Sbjct: 188 SLIE-CTELALAGKLDKEPSVQFPKFT----GKVIP---------RDDRDGVILEGTYEL 233

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD-LRDESDRQGYRVVIELK 315
                 + ++ ++E+PY+ ++   +  +  L  +  IV   D    +  R    +  +  
Sbjct: 234 ----NGKTKLTISEVPYKFDREEYVAVLDALEEKDLIVSYNDRCSKDGFRFEVTLKRDYF 289

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +         Q+ +   L  L + N+V +N        L+ + +                
Sbjct: 290 KSEDESARHEQIMKDFKLTQLVAQNIVVVNER-----GLVEVFEKASDL----------- 333

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
                R    + +G       L +   +  +  N   A+ E + R      IK  I+L  
Sbjct: 334 ----IRRFVEIRLGYVDKRIELMQAETLEAY--NYAMAKAEFIDRV-----IKGEIELQG 382

Query: 436 -DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              S  + S             ++ + L  +T    D +  + +    E +      +  
Sbjct: 383 KKKSEVMQSINGHEKLRPYADKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTA-- 440

Query: 495 SRLLGIIKQELLSVKD 510
              +   K++L  +K 
Sbjct: 441 ---MKEYKKDLKELKK 453


>gi|238695150|ref|YP_002922344.1| topoisomerase medium subunit [Enterobacteria phage JSE]
 gi|220029286|gb|ACL78221.1| topoisomerase medium subunit [Enterobacteria phage JSE]
          Length = 454

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 96/495 (19%), Positives = 173/495 (34%), Gaps = 54/495 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K A 
Sbjct: 12  TYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMAD 71

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I   V    + HG     +A + MA  WS    L++GQGNFGS       A RY   R+ 
Sbjct: 72  IGSGVAELGYHHGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARVH 131

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           +    +  D+         + D     P       P VL NG  GIA G  T+I  H+L 
Sbjct: 132 ENFFKIYKDMNCAP----KHEDLEHIPPAFYLPVVPMVLANGISGIATGYKTDILPHSLE 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            +++ C  +     +D +  ++  +      G VI             R  +++ G   +
Sbjct: 188 SLIE-CTELALAGKLDKEPSVQFPKFT----GKVIP---------RDDRDGVILEGTYEL 233

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD-LRDESDRQGYRVVIELK 315
                 + ++ ++E+PY+ ++   +  +  L  +  IV   D    +  R    +  +  
Sbjct: 234 ----NGKTKLTISEVPYKFDREEYVAVLDALEEKDLIVSYNDRCSKDGFRFEVTLKRDYF 289

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +         Q+ +   L  L + N+V +N        L+ + +                
Sbjct: 290 KSEDESARHEQIMKDFKLTQLVAQNIVVVNER-----GLVEVFEKASDL----------- 333

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
                R    + +G       L +   +  +  N   A+ E + R              +
Sbjct: 334 ----IRRFVEIRLGYVDKRIELMQAETLEAY--NYAMAKAEFIDRVIKGEIELQGKKKAE 387

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                + S             ++ + L  +T    D +  + +    E +      +   
Sbjct: 388 ----VMQSINGHEKLRPYADKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTA--- 440

Query: 496 RLLGIIKQELLSVKD 510
             +   K++L  +K 
Sbjct: 441 --MKEYKKDLKELKK 453


>gi|33469558|gb|AAQ19804.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 136

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/136 (55%), Positives = 99/136 (72%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ +IYDA+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + 
Sbjct: 61  QDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTE 120

Query: 162 QEPVVLCARYPNVLVN 177
           +EP VL A +PN+LVN
Sbjct: 121 KEPTVLPAAFPNLLVN 136


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 98/530 (18%), Positives = 187/530 (35%), Gaps = 62/530 (11%)

Query: 1    MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
            MT+    + E + ++   ++++ D +    + +A+     RA+    DGLKP  R+IL+ 
Sbjct: 640  MTKANAYTGEVDIDRSKKTLTVPDFVHKEMVHFAL-AGNARALAHAVDGLKPSQRKILWA 698

Query: 60   MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNF 117
            +M+     + K  + +    EV   +H  G  ++ + + +MAQ+++    + L+  +G F
Sbjct: 699  IMRRSGNESAKVAQLSGYISEVSAFHH--GEMSLQETIIKMAQNFTGGNNINLLIPEGQF 756

Query: 118  GSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G+  AA RY   +L   A  L     +  +D+    +G   EP       P +L
Sbjct: 757  GSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLDYV-TEEGQQVEPNHYVPILPLLL 815

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             NG  GI  G A+NIP  +  +V     ++I+     +  +  ++       G V  G  
Sbjct: 816  CNGSVGIGFGFASNIPPFHPLDVSAAVRSMINGEAAKVV-VRRLVPWAVGYQGEVRRGPE 874

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G     A G     + G  H+            TEIP+ ++  A  + I+ L  +  +  
Sbjct: 875  G--EFIAAGSYQYYVDGRVHV------------TEIPWTLSIEAFRDHISVLASKDVVQR 920

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            IAD    S      + +EL  GA         Y     +   +  +          F+  
Sbjct: 921  IAD---YSGANHVDIDLELTNGAM------TTYAECESELSLTQRIYI----NGTVFSPT 967

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE--VVRIIRFSPNPETA 413
            G+L         V+       L+  + R    +GL  A    ++  +  +  F       
Sbjct: 968  GVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKSTLKFVTHFREGKIDI 1027

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                            ++ + D   Y +    T Y                 T    +++
Sbjct: 1028 VNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFY-----------------TKTSLENL 1070

Query: 474  RNELNSLGIEIKECLDI------LSSRSRLLGIIKQELLSVKDELDTPRR 517
              +++     I +          L    R     ++   +    +   RR
Sbjct: 1071 NRKISETEKRIDKLKKTAPVQMWLDELDRFDRAFEEHENTAVATILKERR 1120


>gi|15215563|gb|AAK91513.1| gyrase subunit A [Campylobacter coli]
 gi|15215565|gb|AAK91514.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|219921136|emb|CAQ76693.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 119

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/119 (63%), Positives = 93/119 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 119


>gi|238810376|dbj|BAH70162.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810378|dbj|BAH70163.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810380|dbj|BAH70164.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810382|dbj|BAH70165.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810384|dbj|BAH70166.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810386|dbj|BAH70167.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810388|dbj|BAH70168.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810390|dbj|BAH70169.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810392|dbj|BAH70170.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810394|dbj|BAH70171.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810396|dbj|BAH70172.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810398|dbj|BAH70173.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810400|dbj|BAH70174.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810402|dbj|BAH70175.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810404|dbj|BAH70176.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810406|dbj|BAH70177.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810408|dbj|BAH70178.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810410|dbj|BAH70179.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810412|dbj|BAH70180.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810414|dbj|BAH70181.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810416|dbj|BAH70182.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810418|dbj|BAH70183.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810420|dbj|BAH70184.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810422|dbj|BAH70185.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810424|dbj|BAH70186.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810426|dbj|BAH70187.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810428|dbj|BAH70188.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810430|dbj|BAH70189.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810432|dbj|BAH70190.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810434|dbj|BAH70191.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810436|dbj|BAH70192.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810438|dbj|BAH70193.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810440|dbj|BAH70194.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810442|dbj|BAH70195.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810444|dbj|BAH70196.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810446|dbj|BAH70197.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810448|dbj|BAH70198.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810450|dbj|BAH70199.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810452|dbj|BAH70200.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810454|dbj|BAH70201.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810456|dbj|BAH70202.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810458|dbj|BAH70203.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 98/136 (72%), Gaps = 1/136 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 170 RYPNVLVNGGGGIAVG 185
           R P++L+NG  GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|60416658|emb|CAI43398.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416682|emb|CAI43410.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|2191121|gb|AAB61011.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 132

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 80/132 (60%), Positives = 101/132 (76%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +++IY+A+ RMAQD+S R  L+ GQGNFGS+DGD  AA RYTE RL K    LL D+ KD
Sbjct: 1   DSSIYEAMVRMAQDFSYRYPLVNGQGNFGSMDGDGAAAMRYTEARLTKITLELLRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+DG +++  NP
Sbjct: 61  TIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLSLSKNP 120

Query: 210 DIDLDALMEIIR 221
           DI ++ LME I+
Sbjct: 121 DITINELMEDIQ 132


>gi|110451856|gb|ABG74482.1| mutant ParC [Neisseria gonorrhoeae]
          Length = 125

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/125 (54%), Positives = 90/125 (72%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           +YL Y ++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHP
Sbjct: 1   AYLEYPMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ 
Sbjct: 61  HGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEIN 120

Query: 148 KDTVD 152
           + TV+
Sbjct: 121 QGTVE 125


>gi|1845587|emb|CAA55580.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 122

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LC 168
           + 
Sbjct: 121 MP 122


>gi|11761834|gb|AAG40207.1|AF303596_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761860|gb|AAG40220.1|AF303609_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761864|gb|AAG40222.1|AF303611_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|85376451|gb|ABC70468.1| DNA gyrase [Listonella anguillarum]
          Length = 100

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/100 (65%), Positives = 85/100 (85%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 100


>gi|11761820|gb|AAG40200.1|AF303589_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761826|gb|AAG40203.1|AF303592_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761828|gb|AAG40204.1|AF303593_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761830|gb|AAG40205.1|AF303594_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761832|gb|AAG40206.1|AF303595_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761836|gb|AAG40208.1|AF303597_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761838|gb|AAG40209.1|AF303598_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761842|gb|AAG40211.1|AF303600_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761846|gb|AAG40213.1|AF303602_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761854|gb|AAG40217.1|AF303606_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761856|gb|AAG40218.1|AF303607_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761880|gb|AAG40230.1|AF303619_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761882|gb|AAG40231.1|AF303620_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
 gi|82654968|emb|CAJ19550.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654970|emb|CAJ19551.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654972|emb|CAJ19552.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654974|emb|CAJ19553.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654976|emb|CAJ19554.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654978|emb|CAJ19555.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654980|emb|CAJ19556.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654982|emb|CAJ19557.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654984|emb|CAJ19558.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654986|emb|CAJ19559.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654988|emb|CAJ19560.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654990|emb|CAJ19561.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654992|emb|CAJ19562.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654994|emb|CAJ19563.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654996|emb|CAJ19564.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654998|emb|CAJ19565.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655000|emb|CAJ19566.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655002|emb|CAJ19567.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655004|emb|CAJ19568.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655006|emb|CAJ19569.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655008|emb|CAJ19570.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655010|emb|CAJ19571.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655012|emb|CAJ19572.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655014|emb|CAJ19573.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 99/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|323575343|dbj|BAJ78211.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 81/132 (61%), Positives = 95/132 (71%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 178 GGGGIAVGMATN 189
           G  GIAVG ATN
Sbjct: 121 GSSGIAVGRATN 132


>gi|11761824|gb|AAG40202.1|AF303591_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761844|gb|AAG40212.1|AF303601_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761858|gb|AAG40219.1|AF303608_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|60416654|emb|CAI43396.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416656|emb|CAI43397.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416660|emb|CAI43399.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416662|emb|CAI43400.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416664|emb|CAI43401.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416666|emb|CAI43402.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416668|emb|CAI43403.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416670|emb|CAI43404.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416672|emb|CAI43405.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416674|emb|CAI43406.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416676|emb|CAI43407.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416678|emb|CAI43408.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416680|emb|CAI43409.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416684|emb|CAI43411.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|11761822|gb|AAG40201.1|AF303590_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761840|gb|AAG40210.1|AF303599_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761874|gb|AAG40227.1|AF303616_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761876|gb|AAG40228.1|AF303617_1 DNA gyrase subunit A [Raoultella terrigena]
 gi|11761878|gb|AAG40229.1|AF303618_1 DNA gyrase subunit A [Raoultella ornithinolytica]
 gi|11761884|gb|AAG40232.1|AF303621_1 DNA gyrase subunit A [Raoultella planticola]
          Length = 127

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|154362219|gb|ABS80937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 91/116 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|154362217|gb|ABS80936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 92/116 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|11761866|gb|AAG40223.1|AF303612_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|238810460|dbj|BAH70204.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810462|dbj|BAH70205.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810464|dbj|BAH70206.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810466|dbj|BAH70207.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810468|dbj|BAH70208.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810470|dbj|BAH70209.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810472|dbj|BAH70210.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810474|dbj|BAH70211.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810476|dbj|BAH70212.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810478|dbj|BAH70213.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810480|dbj|BAH70214.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 97/136 (71%), Gaps = 1/136 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPA 120

Query: 170 RYPNVLVNGGGGIAVG 185
           R P++L+NG  GIAVG
Sbjct: 121 RLPHILLNGTMGIAVG 136


>gi|11761850|gb|AAG40215.1|AF303604_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|15215559|gb|AAK91511.1| gyrase subunit A [Campylobacter coli]
          Length = 108

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/105 (60%), Positives = 84/105 (80%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGD 107


>gi|11761870|gb|AAG40225.1|AF303614_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|208972196|gb|ACI32676.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 119

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 1/116 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+
Sbjct: 1   EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVL 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQK 137
           GKYHPHG++A Y A+  MAQ +S R  L++GQGN G+ D     AA RYTE RL K
Sbjct: 61  GKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNGGAPDDPKSFAAMRYTESRLSK 116


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1089

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 155/453 (34%), Gaps = 46/453 (10%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN---KKYVK 73
              +S    + N  L +A   IL R+IP L DG +   R++++ + +   E N   ++ +K
Sbjct: 630  RRMSYGSFI-NEELIFAAQAILERSIPSLIDGFRLAQRKVVYSLFKREQEANVNFEEKIK 688

Query: 74   CARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
              +++  V     H H   ++   + RMAQ +  S  + L++    FGS    G      
Sbjct: 689  VTQLASYVSEHAAHHHCERSLSRTIIRMAQTFVGSNNVNLLQPFCLFGSRASGGTHDVDA 748

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    L      L+     D +++  N  G  + P       P VLVNG   + +G   
Sbjct: 749  RYIHTLLSSITRLLIHKDDDDILEYH-NVFGRKRHPECFLPIMPMVLVNGSQSVGMGWNR 807

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP+++   +      ++                   P         G     ++     
Sbjct: 808  FIPSYDPRVISSNIKRLLRGETQT-------------PMLPWYRNFKGDIKQVSSNE--Y 852

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
               G+  +         I +TE+P  V     L+ +    R K+   I   +++SD    
Sbjct: 853  TTTGIYDVNDKDRS---IRITELPVHVWTMNYLKVLE---RLKKHSVIEGYKNDSDNTSI 906

Query: 309  RVVIELKRGASA----DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             + + L          +    +L R ++     +++++       +  +   IL+ F   
Sbjct: 907  DIKLSLSEEQMKRFLNEKNPRKLLRLSTTIRTNNMHLLNRFNVLTKYESPDKILEEFFEE 966

Query: 365  REEVVVRRTK-------YLLNKARDRAHVLV----GLAIAVANLDEVVRIIRFSPNPETA 413
            R  +   R +       +  +K   +  +      G      NLD V++   F    +T 
Sbjct: 967  RLNMYRVRKEHMVQILTFERDKLECKVAIFQRVLNGEINIALNLDAVLQEKGFKKYGKTI 1026

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
                    +   D+  +I         +   G 
Sbjct: 1027 NDRFPSYDYLTEDLMSMIRDPSKVDELMAELGD 1059


>gi|11761848|gb|AAG40214.1|AF303603_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|297790981|ref|XP_002863375.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309210|gb|EFH39634.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 118/295 (40%), Gaps = 22/295 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D   ++ IT +S  D + N  L Y     L R IP + DGLK   R+ILF + +   
Sbjct: 1   MQPDTHLDRSITRISYHDFI-NFELIYFFQANLERCIPSVADGLKLSSRKILFTLFKCN- 58

Query: 66  EWNKKYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGSV- 120
               K V   +++ +V     + H   ++   + RMAQD+      + L++  G FGS  
Sbjct: 59  ----KKVTVEQLASDVSKTCSYHHSQQSLAKTIVRMAQDYVGSPNNVNLLDPDGQFGSRI 114

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             G   +  +Y    L   A  L  +     + +    DG   EP+      P VLVNG 
Sbjct: 115 SGGKDASNPKYIFTELSVMARVLFPNDDDVHLQYLKE-DGKTIEPLCYMPVIPTVLVNGA 173

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            G+  G +T IP ++  E+ +    ++     I +D      +G        +  + G+ 
Sbjct: 174 RGVGSGWSTFIPKYDPREIAENIRRLLKGEVMIAMDPWYRKFKGTIEK----VKSKAGVT 229

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
            A   G  +    G+  +     +   +V+TE+P        +  + +   +  I
Sbjct: 230 TASKEGPCTYKTSGLFEVI----NETTLVITELPVYKWTKKYISFLQDTKEKGFI 280


>gi|321470330|gb|EFX81307.1| hypothetical protein DAPPUDRAFT_317722 [Daphnia pulex]
          Length = 591

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 164/489 (33%), Gaps = 48/489 (9%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           +IP + DGL+P  R++LF   +   +   + +K A          +  G A++   +  +
Sbjct: 6   SIPSVMDGLRPTQRKVLFTCFKRNDKDKVEVIKLAGSV--AADSAYREGEASLMGTIIGL 63

Query: 101 AQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           AQD+  S  L L+   G FG     G   A+ RY    L + A F+        +  + +
Sbjct: 64  AQDFVGSNNLNLLVPIGEFGTRHEGGKDAASSRYLSTVLSELARFIFHPSDDPLLKHQID 123

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
            +   +    +    P +L+NG  GI  G   +    N   +VD     +D         
Sbjct: 124 SNEEIEPESYVP-IIPMILINGTSGIGTGGMIDFLKFNPRHIVDFLKQKLDGKQP----- 177

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
                    P    + G TG       G G        +    S    Q+ +TE+P+ V 
Sbjct: 178 --------LPINLWLKGFTGKIE----GSGDNQYTSSGNYAVLSS--TQVEITELPFGVW 223

Query: 277 KAAMLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                  + E +          I D ++       +  + +            LY+   L
Sbjct: 224 THNYKISVIEKLLRGSEEMSPLITDFQEHHTGNTVKFTVTMSEAKMRQAKDEGLYKAFQL 283

Query: 334 QSLF---SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           QS     S+ +   +G     ++   IL+ F   R ++  +R  Y     +  +  L   
Sbjct: 284 QSTHYITSMVLCDPSGSPKIYYSYQQILEDFYPVRLKLYEKRKNYFSGYLQAISKKLSNQ 343

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK-----DLIDLIDDSSYTIGSDG 445
              V  + + V I+    N      +L  R+++   +      +   + D+ +  + +  
Sbjct: 344 FRFVCEVIDDVLIVFNKGNILEV-EDLRHRNYDPDPVSVWKRTNNRKVTDEDAGEVQTGD 402

Query: 446 TMYLSEVQTRAILE----LRLARLTGLGRDDIRNE------LNSLGIEIKECLDILSSRS 495
             YL  +   ++      L+         D +  +      L  L   +    ++  +  
Sbjct: 403 YNYLLHMFDFSLDSKQKLLKKRDFYVKEYDILLKKSASDLWLEDLEQFMVVLKEVEDAEE 462

Query: 496 RLLGIIKQE 504
             L  I + 
Sbjct: 463 GKLASIVET 471


>gi|24475515|dbj|BAC22722.1| DNA gyrase subunit A [Wolbachia endosymbiont of Callosobruchus
           chinensis]
          Length = 124

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/122 (67%), Positives = 99/122 (81%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G    K Y   ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGD
Sbjct: 3   GYHAGKPYKNAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGD 62

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPA+ RYTE RL K +HFLL+D+ +DT+DFRPNYDG+  EPVVL A +PN+LVNG  G+A
Sbjct: 63  PPASMRYTEARLHKVSHFLLNDIDEDTLDFRPNYDGNETEPVVLPAEFPNLLVNGASGVA 122

Query: 184 VG 185
           VG
Sbjct: 123 VG 124


>gi|175941435|gb|ACB72672.1| GyrA [Streptomyces sp. Md 063]
          Length = 180

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 110/206 (53%), Gaps = 26/206 (12%)

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM   
Sbjct: 1   VTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIVLIRRSKTVKIAREGLM--- 57

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                  G + + E+Q  AIL+++L RL  L    I  E + L 
Sbjct: 58  -----------------------GLLEIDEIQANAILDMQLRRLAALEHQKITAEHDELQ 94

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+S  R   I+++EL ++ ++    RR+++V    DM  ED I  ED+VVT
Sbjct: 95  AKINEYNAILASPERQRQIVREELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVT 154

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +S  GYVKR     YR+Q+RGGKG  
Sbjct: 155 ISRSGYVKRTKTDDYRSQKRGGKGVR 180



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 6/175 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR K        R+  +   L + D I  V    + +  +   + G      I  I+  
Sbjct: 9   VRRTKFRLRKAEERAHILRGLLKALDAIDEVIVLIRRSKTVKIAREGLMGLLEIDEIQ-- 66

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                + ++   LA  +     A      A  +E    +     QR+++  +   I    
Sbjct: 67  -ANAILDMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVREELAAIVEKF 125

Query: 777 NDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            D      +    +   ++L  +E  ++T+S  G+ KRT + D+R   R GKG+R
Sbjct: 126 GDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|269148348|gb|ACZ28545.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148352|gb|ACZ28547.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 115

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 115


>gi|11761852|gb|AAG40216.1|AF303605_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761868|gb|AAG40224.1|AF303613_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761872|gb|AAG40226.1|AF303615_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|11761862|gb|AAG40221.1|AF303610_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|269148260|gb|ACZ28501.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148274|gb|ACZ28508.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148278|gb|ACZ28510.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148298|gb|ACZ28520.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148304|gb|ACZ28523.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148312|gb|ACZ28527.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148316|gb|ACZ28529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148320|gb|ACZ28531.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148328|gb|ACZ28535.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148332|gb|ACZ28537.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148336|gb|ACZ28539.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148342|gb|ACZ28542.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148350|gb|ACZ28546.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|269148356|gb|ACZ28549.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148360|gb|ACZ28551.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148362|gb|ACZ28552.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148368|gb|ACZ28555.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148388|gb|ACZ28565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148402|gb|ACZ28572.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148410|gb|ACZ28576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148434|gb|ACZ28588.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148436|gb|ACZ28589.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148438|gb|ACZ28590.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148448|gb|ACZ28595.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|294765291|gb|ADF35683.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148416|gb|ACZ28579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148422|gb|ACZ28582.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148444|gb|ACZ28593.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148446|gb|ACZ28594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|294765294|gb|ADF35684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148258|gb|ACZ28500.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148262|gb|ACZ28502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148264|gb|ACZ28503.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148266|gb|ACZ28504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148268|gb|ACZ28505.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148272|gb|ACZ28507.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148276|gb|ACZ28509.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148280|gb|ACZ28511.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148282|gb|ACZ28512.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148284|gb|ACZ28513.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148288|gb|ACZ28515.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148294|gb|ACZ28518.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148306|gb|ACZ28524.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148310|gb|ACZ28526.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148314|gb|ACZ28528.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148318|gb|ACZ28530.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148322|gb|ACZ28532.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148324|gb|ACZ28533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148326|gb|ACZ28534.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148334|gb|ACZ28538.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148370|gb|ACZ28556.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148374|gb|ACZ28558.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148376|gb|ACZ28559.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148390|gb|ACZ28566.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148392|gb|ACZ28567.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148394|gb|ACZ28568.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148398|gb|ACZ28570.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148400|gb|ACZ28571.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148404|gb|ACZ28573.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148408|gb|ACZ28575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148418|gb|ACZ28580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148420|gb|ACZ28581.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148424|gb|ACZ28583.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148426|gb|ACZ28584.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148428|gb|ACZ28585.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148430|gb|ACZ28586.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148440|gb|ACZ28591.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148450|gb|ACZ28596.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148452|gb|ACZ28597.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148454|gb|ACZ28598.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|294765303|gb|ADF35686.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|175941425|gb|ACB72667.1| GyrA [Streptomyces sp. Bd 205]
          Length = 180

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 109/206 (52%), Gaps = 26/206 (12%)

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM   
Sbjct: 1   VTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM--- 57

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                  G + + E+Q  AILE++L RL  L    I  E + L 
Sbjct: 58  -----------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQ 94

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT
Sbjct: 95  AKINEYNAILASPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVT 154

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +S  GYVKR     YR+Q+RGGKG  
Sbjct: 155 ISRSGYVKRTKTDDYRSQKRGGKGVR 180



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 6/175 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR K        R+  +   L + D I  V    + ++ +   + G      I  I+  
Sbjct: 9   VRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ-- 66

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                + ++   LA  +     A      A  +E    +     QR+++S +   I    
Sbjct: 67  -ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVSEELAAIVEKF 125

Query: 777 NDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            D      +    +   ++L  +E  ++T+S  G+ KRT + D+R   R GKG+R
Sbjct: 126 GDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|2191123|gb|AAB61012.1| DNA gyrase A [Staphylococcus haemolyticus]
          Length = 132

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/132 (56%), Positives = 98/132 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +++IYDA+ RM Q +S R  L++GQGNFGS+DGD  AA RYTE ++ K    LL D+ KD
Sbjct: 1   DSSIYDAMVRMEQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL EV++G + +  NP
Sbjct: 61  TIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLHLSKNP 120

Query: 210 DIDLDALMEIIR 221
           D+ +  LME I+
Sbjct: 121 DVTIAELMEDIQ 132


>gi|10241567|emb|CAC09567.1| DNA gyrase subunit A [Bacteroides vulgatus]
          Length = 98

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 82/98 (83%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHR IL+GM+++G   +K Y K ARI 
Sbjct: 1   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRSILYGMIELGNTSDKAYKKSARIV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGN
Sbjct: 61  GEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGN 98


>gi|114228541|gb|ABI58275.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 115

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 1/114 (0%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 1   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 60

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKA 138
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K 
Sbjct: 61  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 114


>gi|207108362|ref|ZP_03242524.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 220

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 60/256 (23%)

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR-SGKIAMKLDSRDEILSVETCTQE-NDILLT 699
             +   + F TK+G V+R  LS+F      SG  A+ LD  DE++S +   +    +L+ 
Sbjct: 1   FSDERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIA 60

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           + LG  ++FP+  +R    RN+ GV GI L K D V+   ++                  
Sbjct: 61  SHLGIFIKFPLEDVREMG-RNARGVIGIKLNKNDFVVGAVVISD---------------- 103

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                   +L+VSE G GK+T +  +R 
Sbjct: 104 ------------------------------------DGNKLLSVSENGLGKQTLAEAYRG 127

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATK 878
            +R GKGI    +++  + G LV+V  V+D +  +++++    +IRV + +IR   R   
Sbjct: 128 QSRGGKGIIGMRLTQ--KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNAS 185

Query: 879 GVVIFSTAKDERVVSV 894
           GV + +TA  ++V+ V
Sbjct: 186 GVKLINTA--DKVMYV 199



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 75/193 (38%), Gaps = 14/193 (7%)

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           S+ FF+  G V +  +         +  +A++    L++G+ + +           N  +
Sbjct: 6   SLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIV----LDEGDELVSAKVV-----DKNAKH 56

Query: 648 VVFATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQ 704
           ++ A+  G   +  L D  +   N  G I +KL+  D ++     + + N +L  ++ G 
Sbjct: 57  LLIASHLGIFIKFPLEDVREMGRNARGVIGIKLNKNDFVVGAVVISDDGNKLLSVSENGL 116

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +    A R  + R   G+ G+ L  K   ++S+  V   + D        K +    +
Sbjct: 117 GKQTLAEAYRGQS-RGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAKMIRVSIK 175

Query: 764 LISGDTEEITSLK 776
            I       + +K
Sbjct: 176 DIRETGRNASGVK 188



 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++VS  G  K+     YR Q RGGKG  G+ +  +  + V+ + +   +  ++  ++   
Sbjct: 109 LSVSENGLGKQTLAEAYRGQSRGGKGIIGMRLTQKTGNLVSVISVDDENLDLMILTASAK 168

Query: 598 VYKEKVWRLPIGSPQARGKALIN 620
           + +  +  +      A G  LIN
Sbjct: 169 MIRVSIKDIRETGRNASGVKLIN 191


>gi|326804513|ref|YP_004327384.1| hypothetical protein Vi01_013 [Salmonella phage Vi01]
 gi|301795163|emb|CBW37881.1| Topoisomerase IIM [Salmonella phage Vi01]
          Length = 467

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 177/480 (36%), Gaps = 67/480 (13%)

Query: 17  TSVSITDEMQNSYLTYAI-NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            S+++TD + N +  +++ N I  R IP L D LKP  R+ILF  ++ G E   + V   
Sbjct: 28  QSINVTDYVNNDHKAFSVFNSI--RQIPQLIDSLKPSQRKILFTALEYGKE---EIVDRL 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            +       Y   G   + + +  MAQ +  +  +   +  G FGS+ G   ++ RY   
Sbjct: 83  GMFAAARTNY-KSGGENMGNTIVNMAQAFPGTNNIPYFDRDGQFGSIMGRDASSARYISV 141

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +      +     +  +D+  NY G  Q EP       P  LVNG  GI  G +T+ P 
Sbjct: 142 SVSDVIRKIFRKEDEGILDY--NYLGEEQLEPKFFLPVIPMFLVNGINGIGSGYSTDTPC 199

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H +  V+    A++   D               P      G TG              R 
Sbjct: 200 HCVKSVLSALRALLRGED----------PTDLKPYWNGYKGETGYTE---------EGRA 240

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S       +   + +TE+P      +   K+   +   +   + +  +++   G+ + +
Sbjct: 241 YSRGIFKRINATTLHITEVPIGWFAKSYETKVL--LPLYKAGLLTEYANDTTEDGWDITV 298

Query: 313 ELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
             KRG  +   D  + Q+++  S            +G          +L +F  +R    
Sbjct: 299 VFKRGELSKLDDAQIEQMFKLYSANKPVWTAW-DEDGVIRRYSGWKEMLLSFFNYRLIRY 357

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R +YLL +  D+ H L   A+ ++    VV  +R S     A   L Q  +   D   
Sbjct: 358 EDRRQYLLKEMTDKIHRLNNRALFISW--AVVTDMRRSITELKA---LFQTDYPDFDGD- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                                      + ++ L+ +T   R+ + N++ +L  + +E  +
Sbjct: 412 ------------------------LDELFKMSLSSITLDARERLLNQIKNLEEQREELNN 447


>gi|269148270|gb|ACZ28506.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148290|gb|ACZ28516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148292|gb|ACZ28517.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148300|gb|ACZ28521.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148344|gb|ACZ28543.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148346|gb|ACZ28544.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148364|gb|ACZ28553.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148366|gb|ACZ28554.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148372|gb|ACZ28557.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148380|gb|ACZ28561.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148382|gb|ACZ28562.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148384|gb|ACZ28563.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148386|gb|ACZ28564.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148396|gb|ACZ28569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148432|gb|ACZ28587.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242375|gb|ADI24860.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 93/122 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPTLLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242355|gb|ADI24850.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242369|gb|ADI24857.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242371|gb|ADI24858.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 92/122 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242311|gb|ADI24828.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242317|gb|ADI24831.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242325|gb|ADI24835.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242329|gb|ADI24837.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242351|gb|ADI24848.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242353|gb|ADI24849.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242357|gb|ADI24851.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242359|gb|ADI24852.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242361|gb|ADI24853.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242363|gb|ADI24854.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242365|gb|ADI24855.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242367|gb|ADI24856.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242373|gb|ADI24859.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242377|gb|ADI24861.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242379|gb|ADI24862.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242381|gb|ADI24863.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 93/122 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|269148286|gb|ACZ28514.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148330|gb|ACZ28536.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148338|gb|ACZ28540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148340|gb|ACZ28541.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148412|gb|ACZ28577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|294765300|gb|ADF35685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|18874556|gb|AAL79843.1|AF473701_1 DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida]
          Length = 134

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/134 (50%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++
Sbjct: 1   QRRIIYAMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVD 60

Query: 113 GQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           GQGN+G+ D     AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ +EPVVL AR 
Sbjct: 61  GQGNWGAPDDPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARL 120

Query: 172 PNVLVNGGGGIAVG 185
           P++L+NG  GIAVG
Sbjct: 121 PHILLNGITGIAVG 134


>gi|297242349|gb|ADI24847.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDALKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|269148378|gb|ACZ28560.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD   A RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSATAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148354|gb|ACZ28548.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242309|gb|ADI24827.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242319|gb|ADI24832.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242327|gb|ADI24836.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242331|gb|ADI24838.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242337|gb|ADI24841.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242339|gb|ADI24842.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242341|gb|ADI24843.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242343|gb|ADI24844.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/122 (62%), Positives = 92/122 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ +GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|207110089|ref|ZP_03244251.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 79/132 (59%), Positives = 101/132 (76%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD 
Sbjct: 1   LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 120

Query: 185 GMATNIPTHNLG 196
           GMAT+IP H + 
Sbjct: 121 GMATSIPPHRMD 132


>gi|269148406|gb|ACZ28574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148414|gb|ACZ28578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148442|gb|ACZ28592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|294765306|gb|ADF35687.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|13508941|emb|CAC11123.2| DNA gyrase subunit A [Bacteroides ovatus]
          Length = 92

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           YHPHG++++Y A+ RMAQ+W++R  L++GQGN
Sbjct: 61  YHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGN 92


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 105/574 (18%), Positives = 193/574 (33%), Gaps = 106/574 (18%)

Query: 1    MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
            M      SDE +   +G   VS T++++ + L Y        +IP L DGLKP  R+IL+
Sbjct: 668  MAFDREKSDERKRWIRGSDEVSTTEDVEKTELNY------EESIPSLIDGLKPSQRKILW 721

Query: 59   GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +++M      K  + A         +H  G  ++   + RM Q +  +  + L++  G 
Sbjct: 722  TLLKMDETTEMKVSQLAGAVAHRQSYHH--GEESLVRTIVRMGQTFCGASNMPLLQPIGQ 779

Query: 117  FGSV--DGDPPAAERYTECRLQ-------------------------------------- 136
            FG+    G+  A+ RY    L                                       
Sbjct: 780  FGTRHEGGNDAASARYIFTSLAYVDIQKTKQFREKRQMPFDSASQKTYMSPESSTSQGGV 839

Query: 137  -KAAHFLLDDLGKDTVDFR-----------PNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
                 +  D + + T                  +G   EP  LC   P +LVNG  GI  
Sbjct: 840  MTFPGWCYDIMTRPTTRLLFPIADDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGIGT 899

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
            G +T +   N  +V+D     ID   + ++     I     P      G+  I       
Sbjct: 900  GWSTKVANRNPVDVIDMIRRKIDLSSLVVNE----IP----PFYEDYKGKIEIVT----- 946

Query: 245  RGSIVIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                +  G   I   E+ +     + ++E+P  V  +   EK++ ++ +  I + ++   
Sbjct: 947  PTKFISTGKIKISRPERKNASTFSVEISELPIGVWTSKYKEKLSNILEKLPITEFSERHT 1006

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV--ALNGYKPERFTLIGILK 359
            E       +    K         + L  Y  L++  + N V    NG   E   +  I  
Sbjct: 1007 EKQVNFRLIFDRKKAARFLQKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIAN 1066

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             F   R+++  +R +    +   +   +      +  +      ++ S + E+   +L +
Sbjct: 1067 EFFEIRKDLYQKRLEIQKRECEAKLKYVNNQMNFIELVTNGTFELK-SMDRESLELKLEE 1125

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT--GLGRDDIRNEL 477
              +    +K       +  Y                 +LE+ L+RLT   + R   R   
Sbjct: 1126 IGFEVDSMKTENSKKSNYGY-----------------LLEMPLSRLTLDEMNRLKERKSR 1168

Query: 478  NSLG---IEIKECLDILSSR-SRLLGIIKQELLS 507
             +L     E  +      S   +L   IK+    
Sbjct: 1169 RNLELKAAESADWKSTWHSELDKLEESIKKTRKE 1202


>gi|269148308|gb|ACZ28525.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVGNYDG 115


>gi|269148302|gb|ACZ28522.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 115

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHR +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRSVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|18448212|gb|AAL69651.1|AF372652_1 topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 137

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/136 (47%), Positives = 92/136 (67%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLG 147
           E RL    + +L+++ 
Sbjct: 122 EARLSHYGNLMLENIN 137


>gi|297242335|gb|ADI24840.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242313|gb|ADI24829.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242345|gb|ADI24845.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIEKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|15593976|emb|CAC11124.2| DNA gyrase subunit A [Bacteroides thetaiotaomicron]
          Length = 92

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           YHPHG++++Y A+ RMAQ+W++R  L++GQGN
Sbjct: 61  YHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGN 92


>gi|30841942|gb|AAP34703.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|30841950|gb|AAP34704.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 115

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF   YDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDTYDG 115


>gi|297242323|gb|ADI24834.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 90/122 (73%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+   KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAPDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 183/521 (35%), Gaps = 60/521 (11%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + +        S +I   + +  + ++    + R+IP + DG K   R+++F  +    +
Sbjct: 632  NPNANINYSAQSTTIERFIYDDLMHFSNYDNI-RSIPKMLDGQKAGQRKVVFYALNHVGK 690

Query: 67   WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD-GD 123
               K  + A  + +V   +H  G  ++ + +  MA  +  S  L L+   G FGS    +
Sbjct: 691  NEAKVAQMAGTAAQVTQYHH--GEVSLANTIIGMAATYTGSHNLPLLYPSGQFGSRHAKN 748

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              AA RY    +      L+     D + +  + +    EP V     P VLVNG  GI 
Sbjct: 749  SAAAPRYIFTHISSFLPRLIKSEDNDVLTYNVD-ENKKVEPTVYIPVIPIVLVNGANGIG 807

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G   ++P +N  EV+D C  + +  ++                    +G  G       
Sbjct: 808  TGWKCDVPQYNPLEVIDACKRMANGGELSTS-----------KWVPWYVGYNGKMEETTD 856

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            G  SI   G   +         + VTE+P        +E I  L+ +K    I +     
Sbjct: 857  GFNSI---GTYEV-----SGNTLTVTELPIGRATEDWIESIQSLIPDK----IKNYEKNL 904

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                  + + L       V   +L        ++  N                I++    
Sbjct: 905  GPDSVTIKLNLTSPIDDPVATLKLSTKLQTNRMWLYNA---KNKITHYAGPTQIIQEHAR 961

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R ++        +++    +H +  L   +  + E +            + ++ + S +
Sbjct: 962  ERLKLYEAS---RISQIEKASHKMDLLNNKIRYIMEFI----------EGKIKIGKMSTS 1008

Query: 424  ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +     L + +  + Y   ++   YL++       ++   +LT    D +RN++ ++  +
Sbjct: 1009 S-----LNEYLAQNGYLRSNNSFRYLTD-------DISTGQLTTDNVDKLRNQIRNITTD 1056

Query: 484  IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
            I    +  ++  ++       L    DE    R T + E  
Sbjct: 1057 IDALRETTAN--KMWITDLNALRKEVDEYIVERLTPLDEDA 1095


>gi|297242383|gb|ADI24864.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/122 (59%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKK+VK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKFVKSARVVGDAIVKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+T++F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242347|gb|ADI24846.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/122 (60%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +KKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   AHKKYVKSARVVGDAISKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242307|gb|ADI24826.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242333|gb|ADI24839.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/120 (63%), Positives = 92/120 (76%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 2   KKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|269148296|gb|ACZ28519.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFG++DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGTIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148358|gb|ACZ28550.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDG KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGPKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|175941429|gb|ACB72669.1| GyrA [Streptomyces sp. Ht 020]
          Length = 179

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 26/204 (12%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM      
Sbjct: 1   QIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------ 54

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                               G + + E+Q  AILE++L RL  L    I  E + L  +I
Sbjct: 55  --------------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKI 94

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E  +IL+S ++   I+ +EL ++ D+    RR+ +V    DM  ED I  ED+VVT+S 
Sbjct: 95  NEYNEILASPAKQRTIVSEELAAIVDKFGDDRRSALVPFDGDMSIEDLIAEEDIVVTISR 154

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSG 568
            GYVKR     YR+Q RGGKG  G
Sbjct: 155 SGYVKRTKTDDYRSQNRGGKGVRG 178



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS---EERCQELKLKEQFIL 801
            A  +E    +   + QR ++S +   I     D      +    +   ++L  +E  ++
Sbjct: 91  QAKINEYNEILASPAKQRTIVSEELAAIVDKFGDDRRSALVPFDGDMSIEDLIAEEDIVV 150

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           T+S  G+ KRT + D+R  NR GKG+R T
Sbjct: 151 TISRSGYVKRTKTDDYRSQNRGGKGVRGT 179


>gi|175941431|gb|ACB72670.1| GyrA [Streptomyces sp. Md 005]
 gi|175941433|gb|ACB72671.1| GyrA [Streptomyces sp. Md 039]
          Length = 180

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 109/206 (52%), Gaps = 26/206 (12%)

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM   
Sbjct: 1   VTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM--- 57

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                  G + + E+Q  AILE++L RL  L    I  E + L 
Sbjct: 58  -----------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQ 94

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E   IL+S  R   I+ +EL ++ ++    R +++V    DM  ED I +ED+V+T
Sbjct: 95  AKINEYNAILASPERQRQIVSEELAAIVEKFGDDRCSKLVPFYGDMSIEDLIAKEDIVLT 154

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +S  GYVKR     YR+Q+RGGKG  
Sbjct: 155 ISRSGYVKRTKTDDYRSQKRGGKGVR 180



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 6/175 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR K        R+  +   L + D I  V    + ++ +   + G      I  I+  
Sbjct: 9   VRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ-- 66

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                + ++   LA  +     A      A  +E    +     QR+++S +   I    
Sbjct: 67  -ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILASPERQRQIVSEELAAIVEKF 125

Query: 777 NDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            D      +    +   ++L  KE  +LT+S  G+ KRT + D+R   R GKG+R
Sbjct: 126 GDDRCSKLVPFYGDMSIEDLIAKEDIVLTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|270719656|ref|ZP_06223336.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270315398|gb|EFA27669.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 181

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/180 (42%), Positives = 106/180 (58%), Gaps = 5/180 (2%)

Query: 404 IRFSPNPETARRELMQRSW----NASDIKDLIDLIDDSSYTIGSDGT-MYLSEVQTRAIL 458
           IR S N E A   +  RSW    +  ++ D+    D+    +G  G   YLS  Q  AIL
Sbjct: 1   IRNSKNREEAATAISSRSWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 60

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           ELRL RLTG+  +++  E   L ++I + L ILSS  RL+ +I++EL  VK +    R T
Sbjct: 61  ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 120

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I     D++ ED I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+ 
Sbjct: 121 EITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIE 180



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 763 RLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            +I  + EE+ +   D     +     +   ++L  +E  ++T+S +G+ K     D+  
Sbjct: 101 EVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEA 160

Query: 820 SNRSGKGIRATDVSKIN 836
             R GKG  AT + + +
Sbjct: 161 QRRGGKGKSATKMKEED 177


>gi|297242315|gb|ADI24830.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/120 (61%), Positives = 90/120 (75%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 3   KKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|312270883|gb|ADQ55849.1| topoisomerase II medium subunit [Escherichia phage PhaxI]
          Length = 446

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 165/471 (35%), Gaps = 40/471 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S+++T+ +   +  +++ V   R IP L D LKP  R+ILF  ++      ++ V    
Sbjct: 7   KSITVTEFINGDHKEFSV-VNSIRQIPQLIDSLKPSQRKILFAALE---YNKEEIVDRLG 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +       Y   G   +   +  MAQ +  +  +   +  G FGS+ G    + RY    
Sbjct: 63  MFAAARTNY-KSGGENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGREAPSARYISVA 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           + +    +        +++  NY G  + EP       P  LVNG  GI  G AT+ P H
Sbjct: 122 VSEVIRKIFRKEDDGILEY--NYLGEEKLEPKFFLPILPMFLVNGINGIGSGYATDPPCH 179

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            +  V+    A++   D               P      G TG         G    RG+
Sbjct: 180 CVKSVLSALRALLRGKD----------PKDLKPYWNGFKGETGYTE-----EGRAYCRGL 224

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                   +   + +TE+P          K+   +   +   + +  +++   G+ + + 
Sbjct: 225 ----FPRVNATTLNITEVPIGWFSKTYETKVL--LPLYKAGVLTEYANDTTEDGWDITVV 278

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVR 371
            KRG  + +   Q+ +   L S       A   +G          +L  F  +R      
Sbjct: 279 FKRGELSKLNDEQVEQMFRLYSANKPVWTAWDEDGVIHRYDGWKDMLLPFFNYRLSRYED 338

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +YL+ +  D+ H L   AI +     V+  +R S     A   L Q  +   D     
Sbjct: 339 RRQYLIKELTDKIHRLNNRAIFIGW--AVITDMRRSLTELKA---LFQTDYPDFDGDLDD 393

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                 S          L++++   +    L        D    +L+ L  
Sbjct: 394 LFKMSLSSITLDARERLLNQIKNLEVQREELN--NKQDIDLYTEDLDDLEK 442


>gi|185178912|ref|ZP_02964680.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|184209172|gb|EDU06215.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
          Length = 126

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 86/123 (69%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECR 134
           E R
Sbjct: 124 ETR 126


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 72/298 (24%), Positives = 115/298 (38%), Gaps = 20/298 (6%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               D   +   T + IT  +    + Y I     RAIP L DGLKP  R++L+   +  +
Sbjct: 723  TDPDTYLDLSPTKIDITAFVDKELVLYDIES-NQRAIPSLMDGLKPGQRKVLYACFKRNL 781

Query: 66   EWNKKYVKCARISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
               K  +K +++SG V  K  + HG A++   +  MAQ +  S  + L+   G FGS   
Sbjct: 782  ---KTKLKVSQLSGFVSDKAAYHHGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGSRAR 838

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   +A RY    L   A +L  +     + ++ + DG   EP       P VL+NG  
Sbjct: 839  GGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKED-DGKVIEPFYYAPILPMVLINGSD 897

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T IP  +  +++      I       +                  G  G    
Sbjct: 898  GIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEK---------KTLKPFSNGWKGTMTH 948

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                 G  V R       +  D + I +T++P  V   +  E+I   ++       A 
Sbjct: 949  EYDKNGKFV-RWRMTGCFSVVDLKTIQITDLPIGVWTESYREEIETWIKGNEDAGTAK 1005


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 114/295 (38%), Gaps = 20/295 (6%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               D   +   T + IT  +    + Y I     RAIP L DGLKP  R++L+   +  +
Sbjct: 723  TDPDTYLDLSPTKIDITAFVDKELVLYDIES-NQRAIPSLMDGLKPGQRKVLYACFKRNL 781

Query: 66   EWNKKYVKCARISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
               K  +K +++SG V  K  + HG A++   +  MAQ +  S  + L+   G FGS   
Sbjct: 782  ---KSKLKVSQLSGYVSDKAAYHHGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGSRAR 838

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   +A RY    L   A +L  +     + ++ + DG   EP       P VL+NG  
Sbjct: 839  GGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKED-DGKVIEPFYYAPILPMVLINGSD 897

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T IP  +  +++      I       +                  G  G    
Sbjct: 898  GIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRNEKRN---------LKPFSNGWKGTMTH 948

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                 G  V R       +  D + I +T++P  V   +  E+I   ++      
Sbjct: 949  EYDKSGKFV-RWRMTGCFSVVDLKTIQITDLPIGVWTESYREEIETWIKGNEEAG 1002


>gi|5712089|gb|AAD47358.1|AF038578_1 gyrase A subunit [Pseudomonas stutzeri]
          Length = 255

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 16/220 (7%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  G   + P+     F+   S G+  + L +GD +I+ A+        D     
Sbjct: 6   YIFMATAKGTVKKTPLVQ---FSRPRSSGLIALRLEEGDTLIAAAVT-------DCAQEV 55

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK----EQFILTVSEKGFGK 810
           M      + +   +++     +    V G    E  + + +        ILT S +G+GK
Sbjct: 56  MMFSDGGKVIRFKESKVRMMGRTARGVRGMRLPEGQRIISMLIPELGAQILTASVRGYGK 115

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           RT+  +     R G+G+ A   ++ N  GALV    V + ++I+L+SD+GTL+R  V+E+
Sbjct: 116 RTAMEEVPRRGRGGQGVIAMVTNERN--GALVGAVQVLEGEEIMLISDQGTLVRTRVDEV 173

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
               R T+GV +    K+E +V +ER++E    D  E  E
Sbjct: 174 SSLGRNTQGVTLIKLGKNEHLVGLERVQEPSEEDVLEDVE 213



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 15/216 (6%)

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                Y+  AT  G V++  L  F +   SG IA++L+  D +++        ++++ + 
Sbjct: 1   EPTGAYIFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCAQEVMMFSD 60

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADADYDERICYM 755
            G+ +RF  S +R   GR + GVRG+ L +G ++ISM I      +L A      +   M
Sbjct: 61  GGKVIRFKESKVR-MMGRTARGVRGMRLPEGQRIISMLIPELGAQILTASVRGYGKRTAM 119

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           + +  + R   G    +T+ +N + V             L+ + I+ +S++G   RT   
Sbjct: 120 EEVPRRGRGGQGVIAMVTNERNGALV--------GAVQVLEGEEIMLISDQGTLVRTRVD 171

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +     R+ +G+    + K   +  L  V   ++ D
Sbjct: 172 EVSSLGRNTQGVTLIKLGKNEHLVGLERVQEPSEED 207



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 103/268 (38%), Gaps = 18/268 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                +   +  G VK+ PL  +   R    G   + + + D +    +      V+ FS
Sbjct: 2   PTGAYIFMATAKGTVKKTPLVQFSRPRSS--GLIALRLEEGDTLIAAAVTDCAQEVMMFS 59

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V + K  ++ +    ARG   +  + L +G+RI +++  PE         ++ A+ 
Sbjct: 60  DGGKVIRFKESKVRMMGRTARG---VRGMRLPEGQRIISML-IPEL-----GAQILTASV 110

Query: 654 HGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + +  +  R   G IAM  +     ++      +  +I+L +  G  VR  +
Sbjct: 111 RGYGKRTAMEEVPRRGRGGQGVIAMVTNERNGALVGAVQVLEGEEIMLISDQGTLVRTRV 170

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +     RN+ GV  I L K + ++ +  V       +E +      S     +  +  
Sbjct: 171 DEVSSLG-RNTQGVTLIKLGKNEHLVGLERVQEP---SEEDVLEDVEASLDEESLEKEMP 226

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798
            +++  ++  + G   +     +   +Q
Sbjct: 227 VVSTEPDEDELLGGGGDVPPDVVPTDDQ 254


>gi|62125791|gb|AAX63809.1| topoisomerase II subunit A [Haemophilus quentini]
          Length = 121

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/121 (61%), Positives = 89/121 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIA
Sbjct: 61  APAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIA 120

Query: 184 V 184
           V
Sbjct: 121 V 121


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/298 (24%), Positives = 115/298 (38%), Gaps = 20/298 (6%)

Query: 6    ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
               D   +   T + IT  +    + Y I     RAIP L DGLKP  R++L+   +  +
Sbjct: 722  TDPDTYLDLSPTKIDITAFVDKELVLYDIES-NQRAIPSLMDGLKPGQRKVLYACFKRNL 780

Query: 66   EWNKKYVKCARISGEVMGK-YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--V 120
               K  +K +++SG V  K  + HG A++   +  MAQ +  S  + L+   G FGS   
Sbjct: 781  ---KTKLKVSQLSGFVSDKAAYHHGEASLNGTIVNMAQSFTGSNNIALLYPAGIFGSRAR 837

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   +A RY    L   A +L  +     + ++ + DG   EP       P VL+NG  
Sbjct: 838  GGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKED-DGKVIEPFYYAPILPMVLINGSD 896

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T IP  +  +++      I       +                  G  G    
Sbjct: 897  GIGTGFSTTIPQFDPLDMLHSIRLRIYGKTTRREK---------RTLKPFSNGWKGTMTH 947

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
                 G  V R       +  D + I +T++P  V   +  E+I   V+       A 
Sbjct: 948  EYDKSGKFV-RWRMTGCFSVVDLKTIQITDLPIGVWTESYREEIETWVKGNEDAGTAK 1004


>gi|10241569|emb|CAC09566.1| DNA gyrase subunit A [Bacteroides uniformis]
          Length = 93

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 78/93 (83%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM++SY+ Y+++VI+ RA+PD+++G KPVHRRILFGMM +G   +K Y K AR+ GEV+G
Sbjct: 1   EMKSSYIDYSMSVIVSRALPDVKNGFKPVHRRILFGMMGLGNTSDKPYKKSARVVGEVLG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           KYHPHG++++Y AL RMAQ W++R +L++GQGN
Sbjct: 61  KYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGN 93


>gi|312232294|gb|ADQ53543.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 1/111 (0%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           +  Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 61  SPCYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 111


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/496 (17%), Positives = 183/496 (36%), Gaps = 93/496 (18%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+    + R+IP++ DG KP  R++L+  ++     +K+ V
Sbjct: 677  EKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVLYTCLKRN---DKREV 732

Query: 73   KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            K A+++G V     + HG  ++   +  +AQ++  S  + L++  G FG+    G   A+
Sbjct: 733  KVAQLAGSVAEHSAYHHGEVSLMSTIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAAS 792

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY    L+                                                   
Sbjct: 793  PRYIFTMLRYI------------------------------------------------- 803

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
              IP +N  E+++    ++D  D            P  P      G        + G   
Sbjct: 804  -YIPNYNPREIIENLYRMMDGAD----------PKPMVPYYKNFKG-----VIESCGDFR 847

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESD 304
             +I G    E +    ++I +TE+P         E + E +    +K    I D ++ + 
Sbjct: 848  YIING----EISVIGPDKIEITELPIGTWTQTYKETVLEPMLHGTDKTPATITDYKEYNT 903

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKAF 361
                  +I L R    D+  + L++   LQ+  +V  +          +  +++ ILK F
Sbjct: 904  DTAVHFIIMLNRDKLLDLERDGLHKAFKLQTTMTVTSMCAFDENQCLQKYDSVLQILKGF 963

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R E+  +R +YL    +  A  L   A  +    +   +I      +    EL++R 
Sbjct: 964  YKVRLEMYHKRKEYLEGILQAEASKLSNQARFIVEKCDGTIVIENKK-RKDMIAELIRRE 1022

Query: 422  WNASDIKDLI------DLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDI 473
            + +  +          +++++ +  +  +      +++     +L + L  LT   +D++
Sbjct: 1023 YESDPVLAWKLSQNREEVLEEVAENVDDETVSSTAITKENFDYLLGMTLWSLTKEKKDEL 1082

Query: 474  RNELNSLGIEIKECLD 489
              + +    E+K    
Sbjct: 1083 LRQKDDKLAELKRLQA 1098


>gi|301014720|gb|ADK47159.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 114

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/111 (49%), Positives = 78/111 (70%), Gaps = 1/111 (0%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           +A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K A 
Sbjct: 61  SACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAE 111


>gi|297521997|ref|ZP_06940383.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 177

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 56/208 (26%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+ VRF  S++R     N+ GVRGI L +GD+V+S+ +     A              
Sbjct: 1   AEGKVVRFKESSVRAMG-CNTTGVRGIRLGEGDKVVSLIVPRGEGA-------------- 45

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                                  ILT ++ G+GKRT+  ++   
Sbjct: 46  ---------------------------------------ILTATQNGYGKRTAVAEYPTK 66

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I  R T+GV
Sbjct: 67  SRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGV 124

Query: 881 VIFSTAKDERVVSVERIRESEIVDEAES 908
           ++  TA+DE VV ++R+ E    ++ ++
Sbjct: 125 ILIRTAEDENVVGLQRVAEPVDEEDLDT 152



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 73/181 (40%), Gaps = 12/181 (6%)

Query: 602 KVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KV R    S +A G     +  + L +G+++ +++  P  E +     ++ AT++G  +R
Sbjct: 4   KVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI-VPRGEGA-----ILTATQNGYGKR 57

Query: 660 NKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             ++++   +R+ K  + +   +    ++        + I++ T  G  VR  +S I + 
Sbjct: 58  TAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIV 117

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             RN+ GV  I  A+ + V+ +  V     + D              +      +    +
Sbjct: 118 G-RNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEE 176

Query: 777 N 777
            
Sbjct: 177 E 177



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 653 KHGNVRRNKLSDFIQI--NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
             G V R K S    +  N +G   ++L   D+++S+     E  IL  T+ G   R  +
Sbjct: 1   AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGAILTATQNGYGKRTAV 60

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +     + R + GV  I + + + ++  A+
Sbjct: 61  AEYPTKS-RATKGVISIKVTERNGLVVGAV 89



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSS 594
           E  ++T +  GY KR  ++ Y  + R  KG   + + +    V     V     ++  + 
Sbjct: 43  EGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD 102

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G + + +V  + I     +G   + ++   + E +  +    E     +   +  +   
Sbjct: 103 AGTLVRTRVSEISIVGRNTQG---VILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAE 159

Query: 655 G 655
           G
Sbjct: 160 G 160


>gi|313638139|gb|EFS03398.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 296

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/343 (19%), Positives = 138/343 (40%), Gaps = 59/343 (17%)

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGE 628
            M++ D    +  +++  S+L F+S G      V  LP    +  G  + ++ S L+ GE
Sbjct: 10  AMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGE 69

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSV 687
            I +++  P   +       +F TK+G  +++ ++++         +A+KL   DE+L+V
Sbjct: 70  EIRSVIDIP---TFTEEHRFLFVTKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELLNV 126

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                  DI L TK G  +R+PI+ I     R + GV+ I+L + D+V+   ++   D  
Sbjct: 127 HLIDGTEDIFLATKNGYGLRYPITEIPESGARTA-GVKAINLKQDDKVVGGIVLSLND-- 183

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                             + IL  +++G
Sbjct: 184 -------------------------------------------------PKHILLATQRG 194

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             K+  + +F   +R+ +G+      K N     + +   ++ D + + ++   ++ + V
Sbjct: 195 SLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLADNKDHLFIETNTDQIVEIDV 253

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             +R+  R + G  +     +   VS+  +   EI D  +S E
Sbjct: 254 ANLRVTDRYSNGSFVLDETMEGEPVSIW-LDIPEIKDTTDSKE 295



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 89/206 (43%), Gaps = 13/206 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  + D      E   + V+  G  K+  ++ Y+ QR   K    + ++D+D + ++ 
Sbjct: 69  EEIRSVIDIPTFTEEHRFLFVTKNGMTKQSLITNYKPQRYS-KSMMAIKLKDDDELLNVH 127

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           ++     +   +  G+  +  +  +P    +  G   +  ++L Q +++   +      S
Sbjct: 128 LIDGTEDIFLATKNGYGLRYPITEIPESGARTAG---VKAINLKQDDKVVGGIVL----S 180

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS----RDEILSVETCTQENDIL 697
             +  +++ AT+ G++++ K S+F  I+R+ +  + L          + +     ++ + 
Sbjct: 181 LNDPKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPHRFIGITLADNKDHLF 240

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVG 723
           + T   Q V   ++ +RV   R S G
Sbjct: 241 IETNTDQIVEIDVANLRV-TDRYSNG 265


>gi|156628732|gb|ABU89283.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628738|gb|ABU89286.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628740|gb|ABU89287.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628742|gb|ABU89288.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628744|gb|ABU89289.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 112

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K A 
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAE 110


>gi|156628728|gb|ABU89281.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628730|gb|ABU89282.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628734|gb|ABU89284.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628736|gb|ABU89285.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 113

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/110 (50%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K A 
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAE 110


>gi|297242321|gb|ADI24833.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/120 (62%), Positives = 91/120 (75%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+ +GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 2   KKYVKSARVVGDAIGKYHPHGDSAVYDKIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|312232292|gb|ADQ53542.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/111 (48%), Positives = 76/111 (68%), Gaps = 1/111 (0%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
            A Y A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 61  IACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 111


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
            saltans]
          Length = 1247

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 89/493 (18%), Positives = 169/493 (34%), Gaps = 42/493 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            ++    ++I   +    + +A N    RA+P   DGLKP  R+IL+   + G       +
Sbjct: 667  DRRQKMLTIPTFVDKELIHFA-NAGNLRALPSAVDGLKPSQRKILWSCFRRGNANES--L 723

Query: 73   KCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDG--DPPAA 127
            K +++SG +       HG  ++   + +MAQD+  S  + L+E +G FGS        AA
Sbjct: 724  KVSQLSGYISEVSAFHHGEMSLQQTIIKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHAA 783

Query: 128  ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
             RY   +L   A  +      + + F  + +G + EP       P +LVNG  GI  G A
Sbjct: 784  ARYIFTKLSPLARLIFPKEDDELLQFVED-EGKYVEPRFYVPIIPMLLVNGSVGIGFGFA 842

Query: 188  TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRG 246
              +  H+  +VV     ++          +E +R         ++ +T + +        
Sbjct: 843  CTVQMHHPLDVVTVVRRMMRKNTPTQA--LEGLRPWAVGYSGSVVQKTTVDEEGREVVST 900

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            + V  G     K       + V E+P+      +  ++A+L  E +++ IAD    +   
Sbjct: 901  THVAMGRFTTRKVK-GFPVVRVEELPWDRAIEQLRGRVAKLAEESKVLRIADYSGANHVD 959

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
               V+      +  ++  + L       +    N  A+   +     L   +++ V +  
Sbjct: 960  SDVVLAADSFASPREIEKDFLL------TSNVANNAAVYNPEMVLSPLGESVESIVQWHY 1013

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
                R   Y   K R    +   L    + L                   L     +   
Sbjct: 1014 --EQRLAMYTKRKERQLLLLNTQLKKLKSTLTFT--------------ETLRSGDLDFRK 1057

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            + D   L+   S                  +    +   T    + ++ ++      IK 
Sbjct: 1058 MADENALVKQCSELKLHRENDSF-----DYLTRRPVTYFTNNNVEKLKRDIEHCKSSIKS 1112

Query: 487  CLDILSSRSRLLG 499
                  S   L  
Sbjct: 1113 LES--KSEVELWE 1123


>gi|28629428|gb|AAO32077.1| DNA gyrase [Acinetobacter calcoaceticus]
          Length = 115

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMA 115


>gi|4240541|gb|AAD13612.1| DNA gyrase A [Acinetobacter baumannii]
 gi|28629426|gb|AAO32076.1| DNA gyrase [Acinetobacter genomosp. 3]
 gi|28629430|gb|AAO32078.1| DNA gyrase [Acinetobacter genomosp. 13]
          Length = 115

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/115 (64%), Positives = 91/115 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|82502210|gb|ABB80133.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 90/115 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA  YTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMCYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|282599189|ref|YP_003358501.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
 gi|226973495|gb|ACO94248.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
          Length = 446

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 91/471 (19%), Positives = 162/471 (34%), Gaps = 40/471 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S+++TD +   +  +++ V   R IP L D LKP  R+ILF  ++      ++ V    
Sbjct: 7   KSITVTDFVNTDHKQFSV-VNSIRQIPQLIDSLKPSQRKILFAALE---YNKEEIVDRLG 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +       Y   G   +   +  MAQ +  +  +   +  G FGS+ G   ++ RY    
Sbjct: 63  MFAAARTNY-KSGGENMSGTIVNMAQGFPGTNNIPYFDRDGQFGSIMGRDASSARYISVA 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +      +     +  +++  NY G  + EP       P  LVNG  GI  G +T+ P H
Sbjct: 122 VSDVIRKIFRKEDEGILEY--NYLGEERLEPKFFLPILPMFLVNGINGIGTGYSTDTPCH 179

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            +  V+    A++   D               P      G TG         G    RG+
Sbjct: 180 CVKSVLSALRALLRGED----------PKDLKPYWNGYKGETGYTE-----EGRAYSRGI 224

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                   +   + +TE+P          K+   +   +   + +  +++   G+ + + 
Sbjct: 225 FR----RVNATTLHITEVPVGWFAKTYETKVL--LPLYKAGILTEYANDTTEDGWDITVV 278

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVR 371
            KRG  + +   Q+ +   L S       A   +G          +L  F  +R      
Sbjct: 279 FKRGELSKLSDEQVEQMFKLYSANKPVWTAWDEDGVIHRYAGWQDMLLPFFNYRLSRYED 338

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +YLL    DR   L   A+ +     V              + L  + +      DL 
Sbjct: 339 RRQYLLKDMADRIRKLGDRAVFIEWATRV-----DLRQKIDVLKSLFMQDYPDFG-GDLD 392

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +L      +I  D    L + Q   +             D    +L+ L  
Sbjct: 393 ELFKMPLSSITLDARERLLK-QIENLEAQHKELSKKEDIDLYTEDLDDLEK 442


>gi|309049|gb|AAC36878.1| DNA gyrase A subunit [Mycobacterium tuberculosis H37Rv]
 gi|740009|prf||2004291A DNA gyrase:SUBUNIT=A
          Length = 107

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 70/106 (66%), Positives = 82/106 (77%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +L
Sbjct: 2   KYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEML 61

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 62  REIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 107


>gi|218677660|ref|ZP_03525557.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 105

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/105 (66%), Positives = 86/105 (81%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WS
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQPWS 105


>gi|47059210|gb|AAT09328.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/115 (64%), Positives = 90/115 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|156628726|gb|ABU89280.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 114

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 1/110 (0%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           A Y+A+  MAQ +S R  L++GQGN+G+ D     AA  YTE RL K A 
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMCYTESRLSKYAE 110


>gi|145308241|gb|ABP57384.1| ParC [Brucella abortus]
          Length = 260

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 47/298 (15%)

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
              V  +G  P   +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NLD
Sbjct: 2   NMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLD 61

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR    P   ++ELM+                             L++VQ  +IL
Sbjct: 62  EVIRIIREEDEP---KQELMR--------------------------VFELTDVQAESIL 92

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----- 513
            +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++       
Sbjct: 93  NMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTRL 152

Query: 514 TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
             RRT        D+ED     I RE + + VS  G++        RA +      S + 
Sbjct: 153 GKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLS 204

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
            ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   +
Sbjct: 205 FKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQ 260


>gi|92919084|gb|ABE96893.1| DNA gyrase A subunit [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 98

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 80/98 (81%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+ G+V+GKYHPHG+ A+YD 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARVVGDVIGKYHPHGDTAVYDT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R
Sbjct: 61  IVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIR 98


>gi|46203155|ref|ZP_00051974.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 363

 Score =  140 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/410 (22%), Positives = 150/410 (36%), Gaps = 67/410 (16%)

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EK+A+L++EK++  +AD+RDES      V+    R     +++  L+R + L++  
Sbjct: 4   ARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELEARV 63

Query: 338 SVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            +N+  L G   P    L   L+ +V  R  V+ RR+ Y L +   R  +L GL I   +
Sbjct: 64  PLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIVYLD 123

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+RIIR    P+ A   LM R                            L++VQ  A
Sbjct: 124 LDEVIRIIREEDEPKAA---LMAR--------------------------FELTDVQANA 154

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--- 513
           IL+ RL  L  L   +++ E + L  E +   ++L S       I +++ +VK       
Sbjct: 155 ILDTRLRSLRKLEEMELKREFDELTKEKQGIEELLGSEKLQWADITKQIRAVKKTFGPET 214

Query: 514 --TPRRTRIVE----GLLDMEDEDCIVREDMVVTVSHLGYVKRV------PLSVYRAQRR 561
               RRT +        +D        R D        G   R       P+      RR
Sbjct: 215 KLGKRRTTLENPPDTAGIDFTARHGRARAD-HGDPVREGLDPRAEGARHRPVGRLLQGRR 273

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
             +G        +D    L     H   +                    P   G  +  +
Sbjct: 274 HAEGVVPQRDDGQDPAARLERQGLHPRGV--------------EAARAGP-GFGDPVRLM 318

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           + L+ G  I   +P+  +        ++FA   G              R 
Sbjct: 319 VDLDDGTEIVAALPYKPESK------LLFAGSDGRGFIAPSDALFANTRR 362


>gi|47420012|gb|AAT27358.1| DNA gyrase A [Campylobacter jejuni]
          Length = 172

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 26/198 (13%)

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            IA+ N+DEV+ +I+ S +  TAR  L+ +                            LS
Sbjct: 1   KIALDNIDEVIALIKNSSDNNTARDSLVAK--------------------------FGLS 34

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L  +I+ EL  ++ 
Sbjct: 35  ELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRS 94

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V 
Sbjct: 95  KFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVT 154

Query: 571 MRDEDFVTDLFIVSTHTS 588
             D+DF+      +TH +
Sbjct: 155 TYDDDFIESFSTANTHDT 172


>gi|294338122|emb|CBJ93960.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CP220]
          Length = 442

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 170/474 (35%), Gaps = 59/474 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI D   N    Y+    L R I    DGLK   R+I+   +   +    K      I  
Sbjct: 5   SIQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETK----VSIFD 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            ++  Y  + + +    +  MA  +  S  + L+EG+GNFGS   + PAA RY   + +K
Sbjct: 60  NMVQSYTQYLHGSCAGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKK 119

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHNLG 196
             +   D      V    N++GS  EPV      P +++NG   G+A G   NI   +L 
Sbjct: 120 YIN---DLFDIKDVLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLD 176

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            V+                     +    P  A   G   +    ++        GV  +
Sbjct: 177 SVIKYIKTGK--------------KVDLKPYIAGFKGTVELVEDASSNNTQWNFIGVVEV 222

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                ++ + ++TEIP  +     LE +  LV  K+I +  DL D+ +++ ++  +    
Sbjct: 223 -----NKNKAIITEIPPFIEYTKYLEILDNLVESKKIKNYKDLSDQRNQE-FKFEVIFFD 276

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S D  ++ L    S +     N +  N        +  I+  ++  R+  ++++  + 
Sbjct: 277 NISKDKAIDIL--KLSKRETEIYNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFD 334

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L    +  ++ V     V  + +                EL     +  DI+  ++    
Sbjct: 335 LKVLENDLNINVQKLRFVKLIID---------------SELQIMKRSKKDIELDLESKG- 378

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         E     +L+L +   T    + +      +  + +   ++
Sbjct: 379 ----------FIKFEDSYDYLLKLPIHSFTNETFEKLVQNAKEIKAKFETLKNL 422


>gi|175941427|gb|ACB72668.1| GyrA [Streptomyces sp. Fd 004]
          Length = 173

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 26/199 (13%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM  
Sbjct: 1   WVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM-- 58

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                   G + + E+Q  AILE++L RL  L    I  E + L
Sbjct: 59  ------------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDEL 94

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E   IL S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VV
Sbjct: 95  QAKINEYNAILVSPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVV 154

Query: 541 TVSHLGYVKRVPLSVYRAQ 559
           T+S  GYVKR     YR+Q
Sbjct: 155 TISRGGYVKRTKTDDYRSQ 173



 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 6/167 (3%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRR K        R+  +   L + D I  V    + ++ +   + G      I  I+  
Sbjct: 10  VRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ-- 67

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                + ++   LA  +     A      A  +E    +     QR+++S +   I    
Sbjct: 68  -ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNAILVSPERQRQIVSEELAAIVEKF 126

Query: 777 NDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
            D      +    +   ++L  +E  ++T+S  G+ KRT + D+R  
Sbjct: 127 GDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVKRTKTDDYRSQ 173


>gi|28193541|emb|CAD56003.1| DNA gyrase [Proteus mirabilis]
          Length = 115

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 89/115 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L+
Sbjct: 1   VHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           +GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVDF PNYDG+   P V
Sbjct: 61  DGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAV 115


>gi|157885972|emb|CAP09241.1| topoisomerase (DNA) II alpha [Danio rerio]
          Length = 810

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 159/425 (37%), Gaps = 41/425 (9%)

Query: 92  AIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLG 147
           ++   +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   + 
Sbjct: 2   SLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVD 61

Query: 148 KDTVDFRPNYDGS-FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            + + +  NYD +   EP       P VL NGG GI  G A+ IP +++ E+++    ++
Sbjct: 62  DNLLKY--NYDDNLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPNYDVREIINNIHRML 119

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           +  +            P  P+     G    +        G + I   + IE        
Sbjct: 120 NGEE----------PLPMLPSYKGFKGTIDELAKNQYVNNGEVAIIDSTTIE-------- 161

Query: 266 IVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
             +TE+P +       E + E++    EK    I D ++       R V+++      + 
Sbjct: 162 --ITELPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREA 219

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
               L++   LQ+L + N + L  +     +  ++  ILK F   R +  V R  +L+  
Sbjct: 220 EAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGM 279

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
               +  L   A  +    +   +I   P  +   R L Q  +++  +K   D  +    
Sbjct: 280 LGAESAKLSNQARFILEKIQGTLVIENKP-KKELIRMLQQMGYDSDPVKAWKDAQEKEEE 338

Query: 440 TIGSDGTMYL----SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
               D         S      +L + +  LT   +D++  + ++   E+      + + +
Sbjct: 339 EDAEDDDEKEKEDTSGPDYNYLLSMPMWYLTKEKKDELCKQRDAKMTELNTLK--MKAPA 396

Query: 496 RLLGI 500
            L   
Sbjct: 397 DLWKE 401


>gi|121822793|gb|ABM65608.1| DNA topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 119

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/119 (57%), Positives = 88/119 (73%), Gaps = 1/119 (0%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE 
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 61  RLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|269967071|ref|ZP_06181139.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828330|gb|EEZ82596.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 205

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 60/199 (30%)

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVRG+ LA+ DQV+S+                                      
Sbjct: 37  MGRTASGVRGMKLAENDQVVSLI------------------------------------- 59

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                           +   E  ILTV+E G+GKRT+  ++    R  +G+ +  VS+ N
Sbjct: 60  ----------------VPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERN 103

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +V    V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++R
Sbjct: 104 --GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAEDESVVGLQR 161

Query: 897 IRESEI-----VDEAESTE 910
           I E +       ++AE+ E
Sbjct: 162 IEEVDDEELPTDEDAEALE 180



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 68/175 (38%), Gaps = 13/175 (7%)

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A G   +  + L + +++ +++         +   ++  T++G  +R  LS++   
Sbjct: 37  MGRTASG---VRGMKLAENDQVVSLIV------PSHEGDILTVTENGYGKRTALSEYPTK 87

Query: 669 NRS--GKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            R   G +++K+      ++      + +++++ T  G  VR  +  +     RN+ GV 
Sbjct: 88  GRGTQGVVSIKVSERNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVG-RNTQGVT 146

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            I  A+ + V+ +  +   D +        + + +       D  E  +  +   
Sbjct: 147 LIRTAEDESVVGLQRIEEVDDEELPTDEDAEALESTGENTQQDASEAPAADDAEE 201



 Score = 44.1 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              SG   MKL   D+++S+   + E DIL  T+ G   R  +S       R + GV  I
Sbjct: 39  RTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEYPTKG-RGTQGVVSI 97

Query: 728 SLAKGDQ-VISMAIVLHADADYDERIC-YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +++ +  V+    V+  D          +           G   +  +L   +  E  +
Sbjct: 98  KVSERNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRTAEDESVV 157

Query: 786 SEERCQELKLKE 797
             +R +E+  +E
Sbjct: 158 GLQRIEEVDDEE 169


>gi|2588920|dbj|BAA23211.1| GyrA subunit [Klebsiella pneumoniae]
          Length = 109

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/109 (63%), Positives = 88/109 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 109


>gi|226327145|ref|ZP_03802663.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
 gi|225204363|gb|EEG86717.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/134 (52%), Positives = 93/134 (69%), Gaps = 1/134 (0%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           MAQ +S R  LI+GQGN+G+ D     AA RYTE RL K +  LL +LG  TVD+ PN+D
Sbjct: 1   MAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQTLLSELGHGTVDWIPNFD 60

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G+ QEP +L AR PN+++NG  GIAVGMAT+IP HN  E+    V ++DNPD  L  +M+
Sbjct: 61  GTMQEPKMLPARLPNIVLNGTTGIAVGMATDIPPHNAREIGQALVMLLDNPDAGLSDVMQ 120

Query: 219 IIRGPDFPTGAVIL 232
            ++GPD+PT A I+
Sbjct: 121 YVQGPDYPTEAEII 134


>gi|294338321|emb|CBJ94360.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CPt10]
          Length = 442

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 170/474 (35%), Gaps = 59/474 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ D   N    Y+    L R I    DGLK   R+I+   +   +    K      I  
Sbjct: 5   SVQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTETK----VSIFD 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            ++  Y  + + +    +  MA  +  S  + L+EG+GNFGS   + PAA RY   + +K
Sbjct: 60  NMVQSYTQYLHGSCSGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKK 119

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHNLG 196
             +   D      V    N++GS  EPV      P +++NG   G+A G   NI   +L 
Sbjct: 120 YIN---DLFDIKDVLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLD 176

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            V+                     +    P  A   G   +    ++        GV  +
Sbjct: 177 SVIKYIKTGK--------------KVDLKPYIAGFKGTVELVEDASSNNTQWNFIGVVEV 222

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                ++ + ++TEIP  +     LE +  L+  K+I +  DL D+ +++ ++  +    
Sbjct: 223 -----NKNKAIITEIPPFIEYTKYLEILDNLIESKKIKNYKDLSDQRNQE-FKFEVIFFD 276

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S D  ++ L    S +     N +  N        +  I+  ++  R+  ++++  + 
Sbjct: 277 NISKDKAIDIL--KLSKRETEIYNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFD 334

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L    +  ++ V     V  + +                EL     +  DI+  ++    
Sbjct: 335 LKVLENDLNINVQKLRFVKLIID---------------SELQIMKRSKKDIELDLESKG- 378

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                         E     +L+L +   T    + +      +  + +   ++
Sbjct: 379 ----------FIKFEDSYDYLLKLPIHSFTNETFEKLVQNAKEIKAKFETLKNL 422


>gi|213585067|ref|ZP_03366893.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 125

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 58/125 (46%), Positives = 83/125 (66%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+S
Sbjct: 1   IAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLS 60

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 61  HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 120

Query: 604 WRLPI 608
           ++LP 
Sbjct: 121 YQLPE 125



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           + +  N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I
Sbjct: 35  TEITANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFI 94

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
             L+     N +D I+  S +G L  + V ++  
Sbjct: 95  DRLLVA---NTHDTILCFSSRGRLYWMKVYQLPE 125


>gi|69250183|ref|ZP_00605119.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
 gi|68193991|gb|EAN08551.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
          Length = 202

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 32/229 (13%)

Query: 324 LNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   
Sbjct: 1   MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 60

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H+L GL +A  N+DEV+ IIR    P+ A   LM R                      
Sbjct: 61  RLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR---------------------- 95

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K
Sbjct: 96  ----FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 151

Query: 503 QELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +EL +        RR+ +   E    M + D +  E + + +S +G+V+
Sbjct: 152 KELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 200


>gi|3914279|sp|O68891|PARC_ENTSA RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3046560|gb|AAC13493.1| DNA topoisomerase IV subunit C [Citrobacter freundii]
 gi|3046562|gb|AAC13494.1| DNA topoisomerase IV subunit C [Cronobacter sakazakii]
          Length = 110

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 1/108 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 108


>gi|11095196|gb|AAG29770.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 81/98 (82%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           AQ WS R LL++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 61  AQWWSYRHLLVDGHGNFGSMDGDGAAAQRYTEARMSKI 98


>gi|18175500|gb|AAL60063.1| topoisomerase IV subunit A [Yersinia enterocolitica]
          Length = 128

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/128 (50%), Positives = 91/128 (71%), Gaps = 1/128 (0%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G+ D     AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLP 120

Query: 173 NVLVNGGG 180
           N+L+NG  
Sbjct: 121 NILLNGTT 128


>gi|7532891|gb|AAF63268.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532893|gb|AAF63269.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532895|gb|AAF63270.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532897|gb|AAF63271.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532931|gb|AAF63288.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532933|gb|AAF63289.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532935|gb|AAF63290.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532937|gb|AAF63291.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532939|gb|AAF63292.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 82/98 (83%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           AQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 61  AQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 98


>gi|5739485|gb|AAD50498.1|AF174426_2 DNA topoisomerase IV ParC subunit [Acholeplasma laidlawii]
          Length = 123

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 88/123 (71%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D+  E+ I  V + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MSKIDKKLDKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+ +NK Y K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++  GN GS+
Sbjct: 61  GQMGLAFNKSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSI 120

Query: 121 DGD 123
           DGD
Sbjct: 121 DGD 123


>gi|60678990|gb|AAX33776.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 136

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/136 (48%), Positives = 96/136 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L     +G++++KK+ K ARI G+V+GKYHPHG+ ++YDA+  +AQ W + + L+   GN
Sbjct: 1   LLQCGMLGLDFDKKFKKSARIVGDVIGKYHPHGDTSVYDAMINLAQWWKMNIPLLSMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            GS+D D  AA RYTE +L K A++++ D+ K TV F PN+D S  EP+VL + +PN+LV
Sbjct: 61  IGSIDDDKQAAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLV 120

Query: 177 NGGGGIAVGMATNIPT 192
           NG  GIA+GMAT +P 
Sbjct: 121 NGSRGIAIGMATEMPP 136


>gi|213162316|ref|ZP_03348026.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 134

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/133 (60%), Positives = 100/133 (75%), Gaps = 1/133 (0%)

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           +VNG  GIAVGMATNIP HNL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR
Sbjct: 1   MVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGR 60

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
            GI+ AY TGRG + IR  + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+
Sbjct: 61  RGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRV 120

Query: 294 VDIADLRDESDRQ 306
             I+ LRDESD+ 
Sbjct: 121 EGISALRDESDKD 133


>gi|52630911|gb|AAU84919.1| DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 118

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 1/115 (0%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 1   DGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSY 60

Query: 107 RLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           R  LI+GQGN+G+ D     AA RYTE RL K +  LL +LG  TVD+ PN+DG+
Sbjct: 61  RYPLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGT 115


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 125/294 (42%), Gaps = 30/294 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +  + D   +     +S  D +    +T++++ +L R++P+L DG KP HR++ +G ++ 
Sbjct: 700 NTYNPDNYLDPSKKRISYYDFIHKELITFSVDDVL-RSVPNLMDGFKPSHRKVFYGSVEK 758

Query: 64  GVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
            +   K+ +K + ++G V  M KYH HG+ ++   +  MAQ++  S  L L+   G FGS
Sbjct: 759 NIY--KQEIKVSDLTGFVSNMTKYH-HGDQSLSSTIVGMAQNYVGSNNLNLLMPLGMFGS 815

Query: 120 V--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
               G   A+ RY   +L   A  +  D   D +  + + D    EPV      P +LVN
Sbjct: 816 RLTGGKDSASPRYLNTKLDDLAKKIFIDYDFDILQHQ-SEDNCRIEPVYYAPIIPMILVN 874

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GI  G +T I   N  +++     ++ N +               P    + G    
Sbjct: 875 GAEGIGTGYSTKIYPCNPRDIIANIKRLLTNEN----------PKTMKPWFRHLTGTIEK 924

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            +         + R    I      ++ I +T++P  +        +  L+ + 
Sbjct: 925 IDG-----AKYISRAKYEII----GKDTIHITDLPVGIWTDNYKAFLDNLIVQG 969


>gi|319827182|gb|ADV74809.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 94/117 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 186/532 (34%), Gaps = 54/532 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GVK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A +D  +   + L   I+      P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAIKHKITILPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+ V          S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTYV---------ISEQRNIITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  +   ++           +    R  +      +N
Sbjct: 956  RMTFIEEIIDYSSSETIEILVKLKPNSLNRIMEEFKCTEEQDSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  T   IL A++ +R E+  +R       A  +  +++  AI     +  
Sbjct: 1015 FVKPKGGIIEFNTYYEILYAWLPYRRELYQKRLMRE--HAVLKLRIIMETAIVRYINESA 1072

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
               +    + + A R L +  +   +    I      I++ +         Y+  +Q R 
Sbjct: 1073 ELNLSHYEDEKEASRILSEHGFPPLNQTLIISPEFASIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1133 LLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 186/532 (34%), Gaps = 54/532 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GVK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A +D  +   + L   I+      P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAIKHKITILPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+ V          S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTYV---------ISEQRNIITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  +   ++           +    R  +      +N
Sbjct: 956  RMTFIEEIIDYSSSETIEILVKLKPNSLNRIMEEFKCTEEQDSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  T   IL A++ +R E+  +R       A  +  +++  AI     +  
Sbjct: 1015 FVKPKGGIIEFNTYYEILYAWLPYRRELYQKRLMRE--HAVLKLRIIMETAIVRYINESA 1072

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
               +    + + A R L +  +   +    I      I++ +         Y+  +Q R 
Sbjct: 1073 ELNLSHYEDEKEASRILSEHGFPPLNQTLIISPEFASIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1133 LLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 92/532 (17%), Positives = 186/532 (34%), Gaps = 54/532 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GVK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A +D  +   + L   I+      P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPKHELLHYAIKHKITILPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+ V          S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTYV---------ISEQRNIITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  +   ++           +    R  +      +N
Sbjct: 956  RMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  T   IL A++ +R E+  +R       A  +  +++  AI     +  
Sbjct: 1015 FVKPKGGIIEFNTYYEILYAWLPYRRELYQKRLMRE--HAVLKLRIIMETAIVRYINESA 1072

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
               +    + + A R L +  +   +    I      I++ +         Y+  +Q R 
Sbjct: 1073 ELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1133 LLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|121822824|gb|ABM65609.1| DNA topoisomerase IV subunit [Shigella flexneri]
          Length = 119

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/119 (55%), Positives = 87/119 (73%), Gaps = 1/119 (0%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE 
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 61  RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|319827180|gb|ADV74808.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827184|gb|ADV74810.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827186|gb|ADV74811.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 93/117 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 88/532 (16%), Positives = 184/532 (34%), Gaps = 54/532 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GVK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A +D  +   + L   I+      P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPKHELLHYAIKHKITILPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+            S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTY---------DISEQRNIITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  +   ++           +    R  +      +N
Sbjct: 956  RMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  +   IL A++ +R E+  +R     +       ++    +   N    
Sbjct: 1015 FVKPKGGIIEFNSYYEILYAWLPYRRELYQKRLM-REHAVLKLRIIMETAIVRYINESAE 1073

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            + +  +  + + A R L +  +   +    I      I++ +         Y+  +Q R 
Sbjct: 1074 LNLSHY-EDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1133 LLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|168480769|gb|ACA24478.1| DNA gyrase [Wolbachia endosymbiont of Romanomermis iyengari]
          Length = 107

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 78/98 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RAIPD+RDG KPVHRRIL+ M + G +  K Y K A I GEV+GKYHPHG+AA+YD++
Sbjct: 5   ISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAAGIVGEVIGKYHPHGDAAVYDSM 64

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            RMAQD++L +LL++G GNFGSV GDP A+ RYTE RL
Sbjct: 65  VRMAQDFTLLILLVDGHGNFGSVGGDPAASMRYTEARL 102


>gi|163788233|ref|ZP_02182679.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
 gi|159876553|gb|EDP70611.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
          Length = 183

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 57/205 (27%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICY 754
           +L  K G+ +RF  +  R    RN+ GVRGI L     D+VI M  V   D++       
Sbjct: 1   MLALKSGKAIRFEEAKTRPMG-RNASGVRGIRLQDENTDEVIGMIAVDDMDSN------- 52

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                                        IL VSE G+GKR+S 
Sbjct: 53  ---------------------------------------------ILVVSENGYGKRSSL 67

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D+RI+NR GKG++   +++  + G LV++  V D D +++++  G  IR+ V ++R+  
Sbjct: 68  EDYRITNRGGKGVKTISITE--KTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMG 125

Query: 875 RATKGVVIFSTAKDERVVSVERIRE 899
           RAT+GV + +    + + +V ++ +
Sbjct: 126 RATQGVKLINLKGKDSIAAVAKVMK 150



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + +  +       A G   I +   N  E +  ++   + +S+     ++  +++
Sbjct: 6   SGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDE-VIGMIAVDDMDSN-----ILVVSEN 59

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R+ L D+   NR GK    +   ++   ++S++  T E+D+++  K G  +R  ++
Sbjct: 60  GYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVSIKNVTDEDDLMIINKSGIAIRMAVA 119

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +RV   R + GV+ I+L   D + ++A V+
Sbjct: 120 DLRVMG-RATQGVKLINLKGKDSIAAVAKVM 149



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLI 863
           + G   R      R   R+  G+R   +   N    ++ +  V+D D  I++VS+ G   
Sbjct: 5   KSGKAIRFEEAKTRPMGRNASGVRGIRLQDEN-TDEVIGMIAVDDMDSNILVVSENGYGK 63

Query: 864 RVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEI 902
           R  + + RI +R  KGV   S T K   +VS++ + + + 
Sbjct: 64  RSSLEDYRITNRGGKGVKTISITEKTGNLVSIKNVTDEDD 103



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-D 575
           R +       +        +  ++ VS  GY KR  L  YR   RGGKG   + + ++  
Sbjct: 31  RLQDENTDEVIGMIAVDDMDSNILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTG 90

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
            +  +  V+    ++  +  G   +  V  L +     +G  LIN+   +    +  +M
Sbjct: 91  NLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAVAKVM 149



 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRESE 901
           +L    G  IR    + R   R   GV       +  + V+ +  + + +
Sbjct: 1   MLALKSGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDMD 50


>gi|321472296|gb|EFX83266.1| hypothetical protein DAPPUDRAFT_315718 [Daphnia pulex]
          Length = 711

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 85/489 (17%), Positives = 172/489 (35%), Gaps = 44/489 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E          +    VS  + +    + Y  N+   R    + DGL    R+I+F  ++
Sbjct: 221 ESPYPKLHLYRRETRHVSFYEFVHRGLVHYT-NMEHERYTRSIMDGLTVGQRKIIFTCIK 279

Query: 63  MGVEWNKKYVKCARISGEVMGKYH--PHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG 118
                +K+ V  A+++G V  +     +    +   +  +A D+  +  + L++  G+FG
Sbjct: 280 R---TDKEEVTVAQLAGLVAARTSLCNYDEENLTRTIIGLAHDFVGTNNINLLQPIGHFG 336

Query: 119 S--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF-QEPVVLCARYPNVL 175
           +    G+  A+ R     + +    +        +  R   DG    EP       P +L
Sbjct: 337 TRLQGGEDAASPRQISTLMSQLTRIIFHPHDDWLLKHRT--DGKRLIEPEFYAPIIPMIL 394

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG GGI     T+   +N  ++++  + +++  +            P +     I G  
Sbjct: 395 VNGIGGIGTDWTTSRLIYNPRDIIENIMRMLNGEE------------PIY-MNPWIKGYQ 441

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKR 292
           G  +       + VI G    E +     Q+V+TE+P  ++     E + E +    EK 
Sbjct: 442 G--SIQRVDDNTYVISG----EVSKLSATQVVITELPLGISVRNYRESVMENLLHGSEKI 495

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKP 349
              I   ++       R V+ +             + L+R     ++    +   NG+  
Sbjct: 496 PPLITGYKEYHTDTTVRFVVNMTEEKMQQAESQGFHDLFRLQCTHTVTPTLLYDPNGFLK 555

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
              +   ILK +   R  +   R K L  + +     L      V  +     +I     
Sbjct: 556 NYDSNNDILKTYFDVRLNLFEERKKLLTGELQASCKKLTNEIRYVHAIWNG-DLIVNRKK 614

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                 EL + +++   ++  +   +D+  T    G    S      +L +    LT  G
Sbjct: 615 INVLVEELRRLNFDPDPLRARMKNQNDNVKTEDEVGDDDFS-----YLLMMNTRSLTLEG 669

Query: 470 RDDIRNELN 478
            +++     
Sbjct: 670 LNELLQNQK 678


>gi|530421|emb|CAA83739.1| DNA gyrase (alpha) [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 257

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 116/263 (44%), Gaps = 13/263 (4%)

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
           +RL RLT    + +  E   L  +IK+  +IL+    L   I   L  VK +    R+++
Sbjct: 1   MRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIKRKSQ 60

Query: 520 IVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           + +    LD++ ++ I+ +++ + +S  GY+K +  ++         G+     +  D  
Sbjct: 61  VEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGK-----KPNDMW 115

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               + S    ++  S     Y   ++++     + +G  + ++ +    E I   +   
Sbjct: 116 ISQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIK 175

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSRDEILSVETC-TQEN 694
           E  +S    +++  TK+G ++R ++SD      N+S KI MK+   D ++  +   ++ +
Sbjct: 176 EFINSTQ--HLLLVTKNGLIKRTQISDLETKIFNKSFKI-MKISDDDSLVYADLISSKTS 232

Query: 695 DILLTTKLGQCVRFPISAIRVFA 717
              + TK G  VR+ I      +
Sbjct: 233 YCCIVTKNGYAVRYNIXXYSXXS 255


>gi|2281046|emb|CAB10849.1| DNA Gyrase subunit A [Mycoplasma hominis]
          Length = 90

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 74/90 (82%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD RDGLKPVHRRIL+GM ++G+ +   + K ARI G+V+GKYHPHG++++Y+A+
Sbjct: 1   VSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSARIVGDVLGKYHPHGDSSVYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            RMAQD+SLR  LI+G GNFGSVDGD  AA
Sbjct: 61  VRMAQDFSLRYPLIDGHGNFGSVDGDEAAA 90


>gi|321268258|gb|ADW78937.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268260|gb|ADW78938.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 115

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 90/115 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 115


>gi|171850795|emb|CAP11080.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 110

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/110 (60%), Positives = 86/110 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNF 110


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 89/532 (16%), Positives = 183/532 (34%), Gaps = 54/532 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GLK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A ID  +   + L   I       P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYIDKNNPKHELLHYAIDHKITVLPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+ V          S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTYV---------VSEQRNMITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  + + +I           +    R  +      +N
Sbjct: 956  RMAFIEEIVDYSSSETIEILVKLKPNSLSRIIEEFKETEEQNSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  +   IL A++ +R ++  +R             ++    +   N    
Sbjct: 1015 FVKPKGGIIEFNSYYEILYAWLPYRRDLYQKRLM-RERAVLKLRIIMETAIVRYINESAD 1073

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            + +  +  + + A R L +  +   +           I++ +         Y+  +Q R 
Sbjct: 1074 LNLSHY-EDEKEAGRILSEHGFPPLNQSLITSPEFATIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1133 LLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|291335074|gb|ADD94703.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 417

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 127/336 (37%), Gaps = 35/336 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  + ++  +    + ++I+   GR+IP L DGLK   R++L+ + +  + +  K +K 
Sbjct: 103 SIVQMDLSQFINERMIHFSID-DCGRSIPHLLDGLKESQRKVLYAVFKKKLSYKSKTLKV 161

Query: 75  ARISGE-VMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++G       + HG   +YD +  +A D      +  +   G FGS    G   +A R
Sbjct: 162 NQLAGFTAEHTGYHHGEQCLYDTIINLATDIMGKNNIPYLYRDGQFGSRLDGGKDASAGR 221

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG-GIAVGMAT 188
           Y   +       L      + +  R   DG   EP       P  LVNG   GI  G + 
Sbjct: 222 YIFTKEDMLTRKLFIPSDDNLLP-RNTDDGEPVEPRFYVPIIPTALVNGCQAGIGTGWSC 280

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           ++P +N  ++V  C   I N  +   +                 G  G+          I
Sbjct: 281 SLPLYNPLDLVSSCKKWIKNQTLPELS-------------PWYRGFKGVIT-------RI 320

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                S         + + +TE+P  V        + +L+ +K I  ++   + S  +  
Sbjct: 321 SPTKFSTSGLMERKNDTVTITELPIGVWTNKYKSFLEDLLEKKFIKKLS---NYSTPKEV 377

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           + VI+  R       +  L     + ++ + NMV  
Sbjct: 378 KFVIKEHRNGM-KCTMENL---KLINTVTTSNMVLF 409


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/532 (16%), Positives = 183/532 (34%), Gaps = 54/532 (10%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GVK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A +D  +   + L   I+      P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPKHELLHYAIKHKITILPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+            S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTY---------DISEQRNIITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  +   ++           +    R  +      +N
Sbjct: 956  RMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  +   IL A++ +R E+  +R     +       ++    +   N    
Sbjct: 1015 FVKPKGGIIEFNSYYEILYAWLPYRRELYQKRLM-REHAVLKLRIIMETAIVRYINESAE 1073

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            + +  +  + + A R L +  +   +    I      I++ +         Y+  +Q R 
Sbjct: 1074 LNLSHY-EDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            +L              ++  L+ +   ++E           +I +    ++ 
Sbjct: 1133 LLIAAKTHRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1183


>gi|134141855|gb|ABO61322.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141857|gb|ABO61323.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141859|gb|ABO61324.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141861|gb|ABO61325.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141863|gb|ABO61326.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 91/128 (71%), Gaps = 1/128 (0%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G+ D     AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 173 NVLVNGGG 180
           ++L+NG  
Sbjct: 121 HILLNGVT 128


>gi|270650935|ref|ZP_06222222.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270317177|gb|EFA28783.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 157

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 28/185 (15%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  +A+R    R + GVRGI LA           L  D   DE      
Sbjct: 1   MLFSSQGRVVRFAENAVRAMG-RLATGVRGIKLA-----------LTNDISDDESAV--- 45

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                      + EEI+    ++S++ NI +     +   E  ILT ++ G+GKRT   +
Sbjct: 46  -----------EIEEISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSE 94

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +   +R+ KG+ +  VS+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R 
Sbjct: 95  YPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRN 152

Query: 877 TKGVV 881
           T+GV 
Sbjct: 153 TQGVR 157



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 23/158 (14%)

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQA---RGKALINILSLNQGERITTIMPFPEDESS---- 642
           + FSS G V +     +      A   RG  L     ++  E    I    +D +     
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLD 60

Query: 643 ------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-RDEILSV 687
                            ++ AT++G  +R +LS++   +R+  G I++K+     ++++ 
Sbjct: 61  LNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 120

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               + + I+L T  G  VR  +S + +   RN+ GVR
Sbjct: 121 TQVEETDQIMLITDAGTLVRTRVSEVSIVG-RNTQGVR 157



 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 26/127 (20%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI---------------------- 838
           +  S +G   R +    R   R   G+R   ++  N+I                      
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLD 60

Query: 839 ---GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSV 894
                +V++        I+  +  G   R  ++E    SR TKGV+    ++ + +VV+ 
Sbjct: 61  LNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAA 120

Query: 895 ERIRESE 901
            ++ E++
Sbjct: 121 TQVEETD 127



 Score = 42.2 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA------KDERVVSVERIRESEIVDEAE 907
           +L S +G ++R   N +R   R   GV     A       DE  V +E I      D AE
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEIS----DDNAE 56

Query: 908 ST 909
           ++
Sbjct: 57  AS 58



 Score = 41.1 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSS 594
           E  ++T +  GY KR  LS Y  + R  KG   + + +    V     V     ++  + 
Sbjct: 75  EGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAATQVEETDQIMLITD 134

Query: 595 LGFVYKEKVWRLPIGSPQARGK 616
            G + + +V  + I     +G 
Sbjct: 135 AGTLVRTRVSEVSIVGRNTQGV 156


>gi|124108785|gb|ABM90969.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 98

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/96 (63%), Positives = 77/96 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 96


>gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5]
          Length = 455

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 130/354 (36%), Gaps = 60/354 (16%)

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA  N+DEV+RIIR    P+                  ++   D             
Sbjct: 3   GLLIAYLNIDEVIRIIREEDEPKPV----------------MVARWD------------- 33

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L++ Q  AIL +RL  L  L   +IR E + L  E  E   +L+S  +    +  E+  V
Sbjct: 34  LTDNQVEAILNMRLRSLRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEV 93

Query: 509 KDELDTP-----RRTRIVEGLLDMED---EDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           K +         RRT+  +     E+   +  I +E + V +S  G++        RA +
Sbjct: 94  KKKFAKATEVGRRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWI--------RALK 145

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                 + +  ++ D +   F   T   +L  ++ G  +     +LP G  +  G+ L  
Sbjct: 146 GHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFTLGGDKLPGG--RGHGEPLRI 203

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK--L 678
           ++ ++  + + T                +  +  GN      ++ I   R GK  M   L
Sbjct: 204 MVDMDNDQAVLTAFVHDPSRKQ------LIVSTAGNGFVVAEAELIANTRKGKQIMNVAL 257

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
               ++L        + + +  +  + + FP++ +         GVR      G
Sbjct: 258 PEETQLL---VPVSGDHVAVVGENRKLLVFPLAQVPEMT--RGKGVRLQRYKDG 306


>gi|321268250|gb|ADW78933.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/111 (58%), Positives = 88/111 (79%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDT 111


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 172/492 (34%), Gaps = 44/492 (8%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +  +  +    +  +  +  +Q     Y ++ I  R IP+  DG+    R+IL G    
Sbjct: 670  PLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-GVK 727

Query: 64   GVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNFGS 119
                N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+FGS
Sbjct: 728  CFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSFGS 787

Query: 120  V--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
                G    + RY   +L  +    +        + +    DG   EP       P  ++
Sbjct: 788  RHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLAIM 846

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-----PDFPTGAVI 231
              G   + G         L +++    A +D  +   + L   I+      P  P+    
Sbjct: 847  EYGANPSEGWKYTTWARQLEDILALVRAYVDKDNPKHELLHYAIKHKITILPLRPSNYNF 906

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             G       Y    G+            S  R  I +TE+P +V   A +E I +     
Sbjct: 907  KGHLKRFGQYYYSYGTY---------DISEQRNIITITELPLRVPTVAYIESIKKSSN-- 955

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFSVN 340
            R+  I ++ D S  +   ++++LK  +   ++           +    R  +      +N
Sbjct: 956  RMTFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSH-LN 1014

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             V   G   E  +   IL A++ +R E+  +R       A  +  +++  AI     +  
Sbjct: 1015 FVKPKGGIIEFNSYYEILYAWLPYRRELYQKRLMRE--HAVLKLRIIMETAIVRYINESA 1072

Query: 401  VRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
               +    + + A R L +  +   +    I      I++ +         Y+  +Q R 
Sbjct: 1073 ELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQGCYTYILSLQARE 1132

Query: 457  ILELRLARLTGL 468
            +L     R    
Sbjct: 1133 LLIAAKTRRVEK 1144


>gi|259130116|gb|ACV95506.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PH +++IYD L RMAQ WSLR  
Sbjct: 61  PHCDSSIYDTLVRMAQPWSLRYP 83


>gi|134141865|gb|ABO61327.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 90/128 (70%), Gaps = 1/128 (0%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G+ D     AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR P
Sbjct: 61  QGNWGAPDDPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLP 120

Query: 173 NVLVNGGG 180
           ++L+NG  
Sbjct: 121 HILLNGVT 128


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 90/534 (16%), Positives = 184/534 (34%), Gaps = 57/534 (10%)

Query: 5    IISSDEEEEKGI---TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++   E + + I     +  +  +Q     Y ++ I  R IP+  DG+    R+IL G  
Sbjct: 667  VVPLTETQTQSIHSDRQIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-G 724

Query: 62   QMGVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNF 117
                  N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+F
Sbjct: 725  LKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSF 784

Query: 118  GSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            GS    G    + RY   +L  +    +        + +    DG   EP       P  
Sbjct: 785  GSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLA 843

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR-----GPDFPTGA 229
            ++  G   + G         L +++    A +D  +   + L   I       P  P+  
Sbjct: 844  IMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAIERKITVLPLRPSNY 903

Query: 230  VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
               G       Y    G+ V          S  R  I +TE+P +V   A +E I +   
Sbjct: 904  NFKGHLKRFGQYYYSYGTYV---------VSEQRNIITITELPLRVPTVAYIESIKKSSN 954

Query: 290  EKRIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFS 338
              R+  I ++ D S  +   ++++LK  +   ++           +    R  +      
Sbjct: 955  --RMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSH- 1011

Query: 339  VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            +N V   G   E  +   IL A++ +R +V  +R             ++    +   N  
Sbjct: 1012 LNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKRLM-RERAVLKLRIIMETAIVRYINES 1070

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
              + +  +  + + A R L +  +   +           I++ +         Y+  +Q 
Sbjct: 1071 ADLNLSHY-EDEKEASRILSEHGFPPLNQSLITSPEFASIEELNQKALQGCYTYILSLQA 1129

Query: 455  RAILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            R +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1130 RELLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1182


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
            Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 90/534 (16%), Positives = 184/534 (34%), Gaps = 57/534 (10%)

Query: 5    IISSDEEEEKGI---TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++   E + + I     +  +  +Q     Y ++ I  R IP+  DG+    R+IL G  
Sbjct: 667  VVPLTETQTQSIHSDRQIPCSLHLQVDTKAYKLDAI-ERQIPNFLDGMTRARRKILAG-G 724

Query: 62   QMGVEWNKKYVKCARISGEVM-GKYHPHGNAAIYDALARMAQDW---SLRLLLIEGQGNF 117
                  N +  K  +  G V    ++ HG+ ++  ++ + AQ +   S    +  G G+F
Sbjct: 725  LKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYPGSSHLYPVFIGIGSF 784

Query: 118  GSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            GS    G    + RY   +L  +    +        + +    DG   EP       P  
Sbjct: 785  GSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSWLLPYVFE-DGQRAEPEYYVPVLPLA 843

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR-----GPDFPTGA 229
            ++  G   + G         L +++    A +D  +   + L   I       P  P+  
Sbjct: 844  IMEYGANPSEGWKYTTWARQLEDILALVRAYVDKNNPKHELLHYAIERKITVLPLRPSNY 903

Query: 230  VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
               G       Y    G+ V          S  R  I +TE+P +V   A +E I +   
Sbjct: 904  NFKGHLKRFGQYYYSYGTYV---------VSEQRNIITITELPLRVPTVAYIESIKKSSN 954

Query: 290  EKRIVDIADLRDESDRQGYRVVIELKRGASADVI-----------LNQLYRYTSLQSLFS 338
              R+  I ++ D S  +   ++++LK  +   ++           +    R  +      
Sbjct: 955  --RMAFIEEIIDYSSSETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSH- 1011

Query: 339  VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            +N V   G   E  +   IL A++ +R +V  +R             ++    +   N  
Sbjct: 1012 LNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKRLM-RERAVLKLRIIMETAIVRYINES 1070

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASD----IKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
              + +  +  + + A R L +  +   +           I++ +         Y+  +Q 
Sbjct: 1071 ADLNLSHY-EDEKEASRILSEHGFPPLNQSLITSPEFASIEELNQKALQGCYTYILSLQA 1129

Query: 455  RAILELRLARLTGLGRDDIRNELNSLGIEIKE---------CLDILSSRSRLLG 499
            R +L     R        ++  L+ +   ++E           +I +    ++ 
Sbjct: 1130 RELLIAAKTRRVEK-IKKMQARLDKVEQLLQESPFPGASVWLEEIDAVEKAIIK 1182


>gi|208972194|gb|ACI32675.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 117

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 87/115 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++G+GNFGS+DGD
Sbjct: 3   GNDWNKAYKKSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGRGNFGSIDGD 62

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG
Sbjct: 63  SAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 117


>gi|294637121|ref|ZP_06715432.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
 gi|291089692|gb|EFE22253.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
          Length = 159

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/116 (35%), Positives = 75/116 (64%), Gaps = 2/116 (1%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E  ILTV++ G+GKR++  ++   +R+ +G+ +  V++ N  G +V    ++D DQ
Sbjct: 19  VPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTERN--GRVVGAVQIDDGDQ 76

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           I++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +E +S
Sbjct: 77  IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEELDS 132



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 68/162 (41%), Gaps = 17/162 (10%)

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLD 679
           + L   +R+ +++             ++  T++G  +R+ ++++   +R+  G I++K+ 
Sbjct: 6   IKLADDDRVVSLIV------PHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVT 59

Query: 680 S-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
                ++        + I++ T  G  VR  +S + +   RN+ GV  I  A+ + V+ +
Sbjct: 60  ERNGRVVGAVQIDDGDQIMMITDAGTLVRTRVSEVSIVG-RNTQGVILIRTAEDEHVVGL 118

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             V+    D +                 GD E +  ++ND  
Sbjct: 119 QRVVEPVDDEELDSI-------DGSAAEGDEEIVPEVENDDE 153



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 55/183 (30%)

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G   +KL   D ++S+     E  IL  T+ G   R  ++     + R + GV  I + +
Sbjct: 2   GVRGIKLADDDRVVSLIVPHGEGAILTVTQNGYGKRSAVAEYPTKS-RATQGVISIKVTE 60

Query: 732 GD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            + +V+    +   D                                             
Sbjct: 61  RNGRVVGAVQIDDGDQ-------------------------------------------- 76

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    I+ +++ G   RT   +  I  R+ +G+     ++   +  L  V    D+
Sbjct: 77  ---------IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDD 127

Query: 851 DQI 853
           +++
Sbjct: 128 EEL 130



 Score = 41.4 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS- 884
           G+R   ++  +    +V++   +    I+ V+  G   R  V E    SRAT+GV+    
Sbjct: 2   GVRGIKLADDDR---VVSLIVPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKV 58

Query: 885 TAKDERVVSVERIRESE 901
           T ++ RVV   +I + +
Sbjct: 59  TERNGRVVGAVQIDDGD 75


>gi|167946762|ref|ZP_02533836.1| DNA gyrase subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 85/153 (55%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  + IE   S +R++I+V E+PYQVNKA +LEKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 1   MRARTEIESLDSSNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGM 60

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG  A+V+LN L++ T++QS+F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 61  RMVIELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVDGQPRLLNLKQMLEYFIRHRREV 120

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           V RRT + L KARDRAHVL GLA+A+AN+DEV+
Sbjct: 121 VTRRTLFELRKARDRAHVLEGLAVALANIDEVI 153


>gi|21666246|gb|AAM73627.1|AF363611_1 DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 116

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 1/113 (0%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R 
Sbjct: 1   LKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            LI+GQGN+G+ D     AA RYTE RL K +  LL +LG  TVD+ PN+DG+
Sbjct: 61  PLIDGQGNWGAPDDPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGT 113


>gi|259130114|gb|ACV95505.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY  L RMAQ WSLR  
Sbjct: 61  PHGDSSIYHTLVRMAQPWSLRYP 83


>gi|62005851|dbj|BAD91317.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130112|gb|ACV95504.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130128|gb|ACV95512.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY  L RMAQ WSLR  
Sbjct: 61  PHGDSSIYGTLVRMAQPWSLRYP 83


>gi|259130132|gb|ACV95514.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY  L RMAQ WSLR  
Sbjct: 61  PHGDSSIYYTLVRMAQPWSLRYP 83


>gi|259130110|gb|ACV95503.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130130|gb|ACV95513.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|270055922|gb|ACZ59207.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 63/83 (75%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY+ L RMAQ WSLR  
Sbjct: 61  PHGDSSIYNTLVRMAQPWSLRYP 83


>gi|21666248|gb|AAM73628.1|AF363612_1 DNA topoisomerase IV subunit [Providencia stuartii]
          Length = 116

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (0%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRI++ M ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R 
Sbjct: 1   LKPVQRRIVYAMSELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            L++GQGN+G+ D     AA RYTE RL K A  LL +L   TVD+ PN+DG+
Sbjct: 61  PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGT 113


>gi|168997711|gb|ACA42553.1| DNA gyrase subunit A [Escherichia coli]
          Length = 89

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 73/89 (82%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ
Sbjct: 1   PDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 61  PFSLRYMLVDGQGNFGSIDGDSAAAMRYT 89


>gi|46946646|gb|AAT06571.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 86/114 (75%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            WN  Y K ARI G+V+GKYHPHG+  +YD + RMAQ++++R +LI+GQGNFGSVDG   
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFPVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|62005849|dbj|BAD91316.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130102|gb|ACV95499.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130118|gb|ACV95507.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IYD L RMAQ WSLR  
Sbjct: 61  PHGDSSIYDTLVRMAQPWSLRYP 83


>gi|46946650|gb|AAT06573.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 86/114 (75%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|46946648|gb|AAT06572.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 86/114 (75%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   
Sbjct: 1   NWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 61  AAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|7021435|gb|AAF35344.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021437|gb|AAF35345.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021439|gb|AAF35346.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021441|gb|AAF35347.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532941|gb|AAF63293.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532943|gb|AAF63294.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532945|gb|AAF63295.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532947|gb|AAF63296.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532949|gb|AAF63297.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/123 (54%), Positives = 88/123 (71%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKN 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 167 LCA 169
           L A
Sbjct: 121 LPA 123


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  +D +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIEEIPYSDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L++  G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGETSLAATIVNLAQNYVGSNNINLLKPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      +        +  R   D    EP       P VL+NG  GI  G 
Sbjct: 635 PRYIYTEVMPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPVVPLVLINGAEGIGTGW 692


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 133/347 (38%), Gaps = 36/347 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
            +SD+ E++     + T  +    + ++      R+IP++ DGLKP  R+ LF  +    
Sbjct: 606 FNSDKPEDRRTWLKNYT-FINKELILFSKE-DNRRSIPEMIDGLKPGQRKTLFCSLARDW 663

Query: 66  EWNKKYVKCARISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K   K + ++   + +  + HG  ++   + +MAQD+  S  + L+   G FGS   
Sbjct: 664 ---KTECKVSVLTAHAIDRSDYNHGEQSLASTIIKMAQDYVGSSNVNLLLPMGQFGSQIF 720

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G   A+ RY    +  A   L        + +    +    EP       P VLVNG  
Sbjct: 721 GGQDAASARYLYTMISPATRALFHKDDDVLLAWMDGDNQRMIEPKWYIPIIPTVLVNGCE 780

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GI  G +T +P ++  +V+   + ++       +AL  ++               G K  
Sbjct: 781 GIGTGWSTFVPKYSTKDVIKNIMRLM-----SGEALEPMVPSY-----------RGFKGT 824

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIP--YQVNKAAMLEKIAELVREKRIVDIAD 298
                G  + +GV      +     I +TE+P  +  N    L      V +     I +
Sbjct: 825 ITETEGGFITKGVFEKNIQNS---TIRITELPIKHLSNYKKFL-----HVLKTEEKFIKE 876

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           +RD S R    +++ L R        +   +      + + NM   +
Sbjct: 877 IRDNSSRSSIDILLTLSRENMEIADEDIYTKLKLRTKILTTNMNLFD 923


>gi|32481444|gb|AAP84068.1| gyrase [Enterococcus casseliflavus]
          Length = 83

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 70/83 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGKYHPHG++AIY
Sbjct: 1   SVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNF 117
           +++ RMAQ +S R +L++G GNF
Sbjct: 61  ESMVRMAQPFSYRYMLVDGHGNF 83


>gi|110590001|gb|ABG77447.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 536 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 591

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 592 KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 651

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 652 PRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 709


>gi|312192225|gb|ADQ43809.1| topoisomerase IV subunit A [Aerococcus sanguinicola]
          Length = 116

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/116 (54%), Positives = 80/116 (68%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M   G   +  + K A+  G V+G YHPHG++++YDA+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYAMFVDGNTSSHNFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           QDW  R +LIE  GN GS+DGDP AA RYTE RL K A  LL DL K TV+   N+
Sbjct: 61  QDWKNREVLIEMHGNNGSMDGDPAAAMRYTEARLSKIADELLADLDKQTVETMLNF 116


>gi|56550031|gb|AAS75324.2| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 112

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK A+   + MG YHPHG++AIYD + RMAQ WS+R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTE RL   A  ++ D+ ++TVDF+PNYDG   EPV+L +R P +L+NG GG
Sbjct: 61  YTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGG 112


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 507 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 562

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 563 KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 622

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 623 PRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 680


>gi|325972892|ref|YP_004249956.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
 gi|323651494|gb|ADX97576.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
          Length = 335

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 156/374 (41%), Gaps = 78/374 (20%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +  S   ++  +P + +    +  KG +   +   +D + D+  +S++  +L  ++ G +
Sbjct: 9   LAFSRRNFIVSLPYAEFNLGEKIEKGINLSGLISTDDMIRDVIALSSNDDLLIITNKGKI 68

Query: 599 YKEKVW-------RLPIGSPQARGKALINILSLN-----QGERITTIMPFPEDESSWNNL 646
           Y+ +          L   +   + + +  +L L+       E+I  I+   E     ++ 
Sbjct: 69  YRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINV-EPSKYLDSS 127

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           ++  A+K G +++ K+ +F   ++SG I M L   DE++S       ++ILLT+  G+ V
Sbjct: 128 FLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFGRVV 187

Query: 707 RFPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF    +R    + ++GVRGI L  +KG++     I   ++AD  E              
Sbjct: 188 RFKSIDLRDVG-KTAMGVRGIKLVNSKGEK-EGELISASSNADGKE-------------- 231

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              +  ++  G GK      FR+++R  
Sbjct: 232 -----------------------------------VFVLTNLGKGKWVHIDHFRMTSRGV 256

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN---DQIILVSDKGTLIRVPVNEIRI-ASRATKGV 880
            G+ +         G  +  F +N N   ++I ++++ G + R+PVN +     RAT GV
Sbjct: 257 AGVLSQK-----GYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGV 311

Query: 881 VIFST--AKDERVV 892
            I     +++E++V
Sbjct: 312 SIMKLNHSRNEKIV 325



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 17/244 (6%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL------- 729
            + + D I  V   +  +D+L+ T  G+  R   + +       S   + + L       
Sbjct: 40  LISTDDMIRDVIALSSNDDLLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELL 99

Query: 730 -------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                     +Q+I +  V  +       +         +++   + +  +         
Sbjct: 100 DLDSSTFRDDEQIIKIINVEPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGL 159

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840
               E     +      IL  S  G   R  S D R   ++  G+R   +  SK  + G 
Sbjct: 160 QGEDEVVSALIVRDADEILLTSSFGRVVRFKSIDLRDVGKTAMGVRGIKLVNSKGEKEGE 219

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++     D  ++ ++++ G    V ++  R+ SR   GV +      + + S      +
Sbjct: 220 LISASSNADGKEVFVLTNLGKGKWVHIDHFRMTSRGVAGV-LSQKGYGDEIFSFTININN 278

Query: 901 EIVD 904
            + +
Sbjct: 279 PLEE 282



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 1/116 (0%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E   ++           V  +++LG  K V +  +R   RG  G        ++  +   
Sbjct: 215 EKEGELISASSNADGKEVFVLTNLGKGKWVHIDHFRMTSRGVAGVLSQKGYGDEIFSFTI 274

Query: 582 IVST-HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            ++     +   ++LG V +  V  +     +A     I  L+ ++ E+I     F
Sbjct: 275 NINNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGVSIMKLNHSRNEKIVHCFKF 330



 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV-AVFPVNDND 851
           ++     +L  S + F       +F   N   K  +  ++S +     ++  V  ++ ND
Sbjct: 1   MEGINMLLLAFSRRNFIVSLPYAEF---NLGEKIEKGINLSGLISTDDMIRDVIALSSND 57

Query: 852 QIILVSDKGTLIRVPVNEI 870
            ++++++KG + R   N++
Sbjct: 58  DLLIITNKGKIYRTQANQL 76


>gi|226327144|ref|ZP_03802662.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
 gi|225204362|gb|EEG86716.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
          Length = 270

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 32/235 (13%)

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV--IL 324
           ++T +P+QV+ A +LE+IA L+R K++  + DLRDESD +    ++ + R    D+  ++
Sbjct: 1   MITALPHQVSGAKVLEQIAALMRAKKLPLVEDLRDESDHENPTRLVIVPRSNRVDLEQVM 60

Query: 325 NQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             L+  T L+  + VN+  +    +P    L+ IL  ++ +R + V  R  + L K   R
Sbjct: 61  YYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVYRRQTVTNRLNHRLEKVLRR 120

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             +L GL IA  N+DEV+ IIR    P   + ELM+R                       
Sbjct: 121 LEILKGLLIAYLNIDEVIEIIRHEDEP---KAELMRR----------------------- 154

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                LS++Q  AILELRL  L  L    ++ E + L  E      +LSS  RL 
Sbjct: 155 ---FELSDIQAEAILELRLRHLAKLEEIKLKAESDELEKERDSIEKLLSSPRRLN 206


>gi|213023343|ref|ZP_03337790.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 169

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/169 (44%), Positives = 105/169 (62%), Gaps = 8/169 (4%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R E
Sbjct: 1   MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRRE 60

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++
Sbjct: 61  VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNV 120

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGL 468
             +++   D +             DG  YL+E Q +AIL+LRL +LTGL
Sbjct: 121 AAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGL 169


>gi|7021443|gb|AAF35348.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/123 (54%), Positives = 87/123 (70%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ +IYDA+ RM+QDW  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKN 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 167 LCA 169
           L A
Sbjct: 121 LPA 123


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 635 PRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|90017826|gb|ABD83869.1| topoisomerase II subunit A [Haemophilus sp. COAD036]
 gi|90017828|gb|ABD83870.1| topoisomerase II subunit A [Haemophilus sp. COAD165]
 gi|90017830|gb|ABD83871.1| topoisomerase II subunit A [Haemophilus sp. COAD591]
          Length = 115

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/114 (59%), Positives = 83/114 (72%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           S+DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIP 114


>gi|259130104|gb|ACV95500.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130106|gb|ACV95501.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130120|gb|ACV95508.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130122|gb|ACV95509.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130124|gb|ACV95510.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+ +IYD L RMAQ WSLR  
Sbjct: 61  PHGDRSIYDTLVRMAQPWSLRYP 83


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 635 PRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYSPIIPMVLVNGAEGIGTGW 692


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 562 DHNLEEIPYTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRNL---KKEI 617

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAA 127
           K A++ G +     + HG A++   +  +AQ++    ++ LL+  GQ       G   A+
Sbjct: 618 KVAQLVGYISEHATYHHGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHAS 677

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      +        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 678 PRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGADGIGTGW 735


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 635 PRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 635 PRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|325989385|ref|YP_004249084.1| similar to DNA gyrase subunit alpha (probable fragment) [Mycoplasma
           suis KI3806]
 gi|323574470|emb|CBZ40120.1| similar to DNA gyrase, A subunit (probable fragment) [Mycoplasma
           suis]
          Length = 335

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 156/374 (41%), Gaps = 78/374 (20%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +  S   ++  +P + +    +  KG +   +   +D + D+  +S++  +L  ++ G +
Sbjct: 9   LAFSRRNFIVSLPYAEFNLGEKIEKGINLSGLISTDDMIRDVIALSSNDDLLIITNKGKI 68

Query: 599 YKEKVW-------RLPIGSPQARGKALINILSLN-----QGERITTIMPFPEDESSWNNL 646
           Y+ +          L   +   + + +  +L L+       E+I  I+   E     ++ 
Sbjct: 69  YRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINV-EPSKYLDSS 127

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           ++  A+K G +++ K+ +F   ++SG I M L   DE++S       ++ILLT+  G+ V
Sbjct: 128 FLFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFGRVV 187

Query: 707 RFPISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF    +R    + ++GVRGI L  +KG++     I   ++AD  E              
Sbjct: 188 RFKSIDLRDVG-KTAMGVRGIKLVNSKGEK-EGELISASSNADGKE-------------- 231

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                              +  ++  G GK      FR+++R  
Sbjct: 232 -----------------------------------VFVLTNLGKGKWVYIDHFRMTSRGV 256

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN---DQIILVSDKGTLIRVPVNEIRI-ASRATKGV 880
            G+ +         G  +  F +N N   ++I ++++ G + R+PVN +     RAT GV
Sbjct: 257 AGVLSQK-----GYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGV 311

Query: 881 VIFST--AKDERVV 892
            I     +++E++V
Sbjct: 312 SIMKLNHSRNEKIV 325



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 17/244 (6%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL------- 729
            + + D I  V   +  +D+L+ T  G+  R   + +       S   + + L       
Sbjct: 40  LISTDDMIRDVIALSSNDDLLIITNKGKIYRTQANQLLRVKKELSSENKLLQLQHVRELL 99

Query: 730 -------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                     +Q+I +  V  +       +         +++   + +  +         
Sbjct: 100 DLDSSTFRDDEQIIKIINVEPSKYLDSSFLFLASKDGMIKKIKMMNFQNASKSGGIVMGL 159

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840
               E     +      IL  S  G   R  S D R   ++  G+R   +  SK  + G 
Sbjct: 160 QGEDEVVSALIVRDADEILLTSSFGRVVRFKSIDLRDVGKTAMGVRGIKLVNSKGEKEGE 219

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++     D  ++ ++++ G    V ++  R+ SR   GV +      + + S      +
Sbjct: 220 LISASSNADGKEVFVLTNLGKGKWVYIDHFRMTSRGVAGV-LSQKGYGDEIFSFTININN 278

Query: 901 EIVD 904
            + +
Sbjct: 279 PLEE 282



 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 1/116 (0%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E   ++           V  +++LG  K V +  +R   RG  G        ++  +   
Sbjct: 215 EKEGELISASSNADGKEVFVLTNLGKGKWVYIDHFRMTSRGVAGVLSQKGYGDEIFSFTI 274

Query: 582 IVST-HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            ++     +   ++LG V +  V  +     +A     I  L+ ++ E+I     F
Sbjct: 275 NINNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGVSIMKLNHSRNEKIVHCFKF 330



 Score = 38.0 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV-AVFPVNDND 851
           ++     +L  S + F       +F   N   K  +  ++S +     ++  V  ++ ND
Sbjct: 1   MEGINMLLLAFSRRNFIVSLPYAEF---NLGEKIEKGINLSGLISTDDMIRDVIALSSND 57

Query: 852 QIILVSDKGTLIRVPVNEI 870
            ++++++KG + R   N++
Sbjct: 58  DLLIITNKGKIYRTQANQL 76


>gi|315287143|ref|ZP_07872183.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
 gi|313630884|gb|EFR98580.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
          Length = 180

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 26/196 (13%)

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L G
Sbjct: 1   MTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEG 60

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L IA+ N+D ++++IR S   + A+  LM +                            L
Sbjct: 61  LRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------------------------FNL 94

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           S+ Q +AIL++RL RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K
Sbjct: 95  SDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIK 154

Query: 510 DELDTPRRTRIVEGLL 525
            +    RRT I+ G L
Sbjct: 155 VKYADKRRTEILAGDL 170


>gi|28865596|emb|CAD48112.1| gyrase A subunit [Haemophilus influenzae]
          Length = 108

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/108 (58%), Positives = 79/108 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 61  VRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 108


>gi|326581989|gb|ADZ96943.1| DNA gyrase A subunit [Klebsiella pneumoniae]
          Length = 134

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/121 (47%), Positives = 78/121 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 14  HNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y  QRRG
Sbjct: 74  EELELIRDQFGDKRRTEITANPADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEGQRRG 133

Query: 563 G 563
           G
Sbjct: 134 G 134


>gi|110589997|gb|ABG77445.1| topoisomerase IV subunit [Shigella flexneri]
 gi|110589999|gb|ABG77446.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590003|gb|ABG77448.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590005|gb|ABG77449.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590007|gb|ABG77450.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590009|gb|ABG77451.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590011|gb|ABG77452.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590013|gb|ABG77453.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 83/120 (69%), Gaps = 1/120 (0%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           ++GQGN+G+ D     AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L A
Sbjct: 61  VDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPA 120


>gi|309806045|ref|ZP_07700068.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167564|gb|EFO69720.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
          Length = 330

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 124/326 (38%), Gaps = 19/326 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            ED+ V VS  GY+KR  L  Y++      G     +   D V     VST +++  F++
Sbjct: 4   EEDVRVLVSANGYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTN 58

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +    V+ L     +  G+ L   + L   ERI ++       S   +L  +  T  
Sbjct: 59  KGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLIFLITTND 115

Query: 655 GNVRRNKLSDFIQIN---RSGKIAMKLDSR-DEILSVETCT--QENDILLTTKLGQCVRF 708
           G +++  LSD            + +KL      +L VE      +N+ILL T     +RF
Sbjct: 116 GYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSGSDNEILLVTNSAYALRF 175

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ + +   R + GV+ I+L   D  +  AI    +     ++  +    A ++L    
Sbjct: 176 DVNEVPLVGPR-AAGVKSINLKNDDDYVVSAITFDPECLNSLKLGIVTQRGAFKQLQVDL 234

Query: 769 TEEITSLKNDSSVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             + T  K  S +   +  +  +     +  +   I   +      +  + D+ + +R  
Sbjct: 235 VNKFTRAKRGSMILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYS 294

Query: 825 KGIRATDVSKINEIGALVAVFPVNDN 850
            G    D        AL    P+ + 
Sbjct: 295 NGSFVVDTISDGVPVALKLGMPLAEE 320



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 21/212 (9%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMAIVLH 743
           +E+  +L +  G   R  + + +        G     L  GD+VI        S   +  
Sbjct: 4   EEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNLYIFT 57

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              +   R  Y    +  R      ++EI    ++  +          +L       L  
Sbjct: 58  NKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDL-----IFLIT 112

Query: 804 SEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +  G+ K+ +  D + +     + I    +   +    +V       +++I+LV++    
Sbjct: 113 TNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSGSDNEILLVTNSAYA 172

Query: 863 IRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
           +R  VNE+ +      GV   +    D+ VVS
Sbjct: 173 LRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 204


>gi|259130108|gb|ACV95502.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130126|gb|ACV95511.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+ +IYD L RMAQ WSLR  
Sbjct: 61  PHGDISIYDTLVRMAQPWSLRYP 83


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 379 DHNLEEIPYTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRNL---KKEI 434

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAA 127
           K A++ G +     + HG A++   +  +AQ++    ++ LL+  GQ       G   A+
Sbjct: 435 KVAQLVGYISEHAAYHHGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHAS 494

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      +        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 495 PRYIFTEVSPLTRMICHPEDDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGADGIGTGW 552


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 528 DHNLEEIPYTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRNL---KKEI 583

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAA 127
           K A++ G +     + HG A++   +  +AQ++    ++ LL+  GQ       G   A+
Sbjct: 584 KVAQLVGYISEHAAYHHGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHAS 643

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      +        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 644 PRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPILPLVLVNGADGIGTGW 701


>gi|45685139|gb|AAS75323.1| DNA gyrase subunit A [Corynebacterium striatum]
          Length = 112

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 82/112 (73%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GG
Sbjct: 61  YTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGG 112


>gi|10802663|gb|AAG23554.1|AF244605_1 DNA gyrase subunit A [Carboxydothermus hydrogenoformans]
          Length = 160

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 26/182 (14%)

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             DESDR+G R+VIELKR A+  V+LNQL+++T LQ  F + M+AL   +P    L  IL
Sbjct: 4   FTDESDRKGMRIVIELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEIL 63

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++  +++VV RRT+Y LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR  LM
Sbjct: 64  FYYLEHQKDVVTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLM 123

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q +AIL++RL RLT L R+ I  E  
Sbjct: 124 SR--------------------------FGLTEKQAQAILDMRLQRLTALEREKIDEEYR 157

Query: 479 SL 480
            L
Sbjct: 158 EL 159


>gi|115379153|ref|ZP_01466275.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115363848|gb|EAU62961.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score =  128 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG-VEWNKKYV 72
           +      + +E +  YL YA++VI  RA+PD+RDGLKPV RR+L+GM     +  + KY 
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           K A++ G +MG+YHPHG+A+IYDAL R+AQD+SLR  L+
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLV 133


>gi|164456310|dbj|BAF97658.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+AAIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDAAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  ++ +    + +++     R+IP + DGLKP  R +++   +  +   KK +
Sbjct: 523 DHRLEEIPYSEFINKELILFSM-ADNIRSIPSVADGLKPGQREVIWACFKRKL---KKEI 578

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G V     + HG A++   +  +AQD+  S  + L+   G +G+ D  G   AA
Sbjct: 579 KVAQLVGYVSEHAAYHHGEASLAATIVSLAQDFVGSNNVNLLSPNGQYGTRDQGGKDHAA 638

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    L      L        +  + + D    EP       P VLVNG  GI  G 
Sbjct: 639 PRYIFTDLPPLTRALYHPSDDPLLAVQKD-DNLVIEPEYYVPVIPLVLVNGAEGIGTGW 696


>gi|164456292|dbj|BAF97649.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456302|dbj|BAF97654.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456308|dbj|BAF97657.1| DNA gyrase subunit A [Corynebacterium accolens]
 gi|164456314|dbj|BAF97660.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456318|dbj|BAF97662.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456328|dbj|BAF97667.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 81/112 (72%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|254486417|ref|ZP_05099622.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043286|gb|EEB83924.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 152

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 2/134 (1%)

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + +    IS+ER  E+   E  +LT++EKG GK +SS+D+ +  R G G+ A D  K  
Sbjct: 19  EEVNANATISQERYAEMSAAENLLLTITEKGSGKLSSSHDYPVRGRGGLGVTAMD--KAM 76

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F T K E VVSV  
Sbjct: 77  RGGDIVASFPVELDDQIMLATSKGQSIRVPVQGISFRSRSAGGVKVFDTGKGEVVVSVAW 136

Query: 897 IRESEIVDEAESTE 910
           I +       + TE
Sbjct: 137 IADQGDDAVEDGTE 150



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDI 696
           E S     ++  T+ G+ + +   D+    R G     +D      +I++      ++ I
Sbjct: 34  EMSAAENLLLTITEKGSGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVASFPVELDDQI 93

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +L T  GQ +R P+     F  R++ GV+     KG+ V+S+A +     D  E
Sbjct: 94  MLATSKGQSIRVPV-QGISFRSRSAGGVKVFDTGKGEVVVSVAWIADQGDDAVE 146


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG  +    +  +AQ++  S  + L+   G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGEMSSSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 635 PRYIFTEIAPLTRLLCHPADDPLLK-RQTDDNLLVEPEWYLPIIPMVLVNGAEGIGTGW 692


>gi|284097497|ref|ZP_06385584.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830993|gb|EFC35016.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 154

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/153 (58%), Positives = 111/153 (72%), Gaps = 1/153 (0%)

Query: 242 ATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
            TGRG + +R  +H+E     DR  I+VTEIPYQVNKA +LEKIAELV+EKR+  I+D+R
Sbjct: 2   NTGRGLLTVRAKTHVETDEKRDRASIIVTEIPYQVNKAKVLEKIAELVQEKRLEGISDIR 61

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELK+G    VILNQLY++T LQ+ F V M+AL   +PE  TL  IL A
Sbjct: 62  DESDRDGIRVVIELKKGELPPVILNQLYKHTQLQNTFGVIMLALVHNRPEILTLKQILVA 121

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           F+  R EVV+RRT Y L KA +RAH++ GL IA
Sbjct: 122 FLEHRREVVIRRTAYELRKAEERAHIVEGLNIA 154


>gi|164456290|dbj|BAF97648.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456300|dbj|BAF97653.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456326|dbj|BAF97666.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYHTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456316|dbj|BAF97661.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|282599156|ref|YP_003359073.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
 gi|257219226|gb|ACV50241.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
          Length = 449

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/502 (17%), Positives = 189/502 (37%), Gaps = 62/502 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  +SI+  +Q  +  YA      R IP + DGLKP  R+I+   ++      K+ VK A
Sbjct: 1   MKEISISQHIQGDHKAYATY-DNQRNIPHIADGLKPSLRKIIHTAIETMR--GKEEVKVA 57

Query: 76  RISGEVMGKY-HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTE 132
            +         + HG  +I DA+  + +++  +  L L++ QG FG++  +  +  RY  
Sbjct: 58  ALGSRASDLTEYGHGEDSIIDAVVTLGRNYRGTNNLPLLQKQGQFGTMVDNDASEPRYIH 117

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
                       +  +  +DF+ + +G   EPV      P VL+N   G+  G ++ I  
Sbjct: 118 VSRHANLSHCFKEEDRAILDFQVS-EGKTIEPVFFLPPLPLVLINASSGVGNGYSSKILP 176

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +   +++   A+++   I+ +  +               G  G   A  TG  S  I G
Sbjct: 177 RSPQALIEMSKAILNETPINPEWSLPHFP-----------GFKGRVKA--TGPCSYEIHG 223

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              I+     + +  + ++P          K  EL+       I +   +S  Q + + +
Sbjct: 224 A--IQLNPKAKTEFTIIDLPPDSKYQYEQFKERELLPLLDSKTIKNFESDSTEQAWSIKV 281

Query: 313 ELKRGA--SADVI--LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           +  R      +++  +  + R T   ++++      +G      T   +L+ ++      
Sbjct: 282 QSTREFAQHPELVKRMGMILRVTENLTVWT-----WDGQLKRYPTAEALLRDWL------ 330

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
                +Y + K R ++ +          L +V  +                + WNA+  +
Sbjct: 331 --VGREYYMEK-RRQSEIARSTKEMNWLLVKVEFL----------------KWWNANHNQ 371

Query: 429 DLIDLIDDSSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            +    D+   +  S  G +   +     +L L ++ L   G + ++N  + +   ++  
Sbjct: 372 AVRMSNDEIKSSFTSTLGDLKFDDEMLSKLLALPVSSLKMSGIEALQNAHDEVESYVRFM 431

Query: 488 LDILSSRSRLLGIIKQELLSVK 509
               +       +I  ++   K
Sbjct: 432 ESTTA-----KAMIITDMEEYK 448


>gi|309807647|ref|ZP_07701589.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169113|gb|EFO71189.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
          Length = 323

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 118/308 (38%), Gaps = 19/308 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            ED+ V VS  GY+KR  L  Y++      G     +   D V     VST +++  F++
Sbjct: 4   EEDVRVLVSANGYLKRSSLRSYQSTDSADNG-----LPSGDEVIFDKTVSTLSNLYIFTN 58

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +    V+ L     +  G+ L   + L   ERI ++       S   +L  +  T  
Sbjct: 59  KGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNS---DLIFLITTND 115

Query: 655 GNVRRNKLSDFIQIN---RSGKIAMKLDSR-DEILSVETC--TQENDILLTTKLGQCVRF 708
           G +++  LSD            + +KL      +L VE      +N+ILL T     +RF
Sbjct: 116 GYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRF 175

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ + +   R + GV+ I+L   D  +  AI          ++  +    A ++L    
Sbjct: 176 DVNEVPLVGPR-AAGVKSINLKNDDDYVVSAITFDPKCLNSLKLGIVTQRGAFKQLQVDL 234

Query: 769 TEEITSLKNDSSVEGNISEERCQE----LKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
             + T  K  S +   +  +  +     +  +   I   +      +  + D+ + +R  
Sbjct: 235 VNKFTRAKRGSMILRELKTKPHRIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYS 294

Query: 825 KGIRATDV 832
            G    D 
Sbjct: 295 NGSFVVDT 302



 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMAIVLH 743
           +E+  +L +  G   R  + + +        G     L  GD+VI        S   +  
Sbjct: 4   EEDVRVLVSANGYLKRSSLRSYQS-TDSADNG-----LPSGDEVIFDKTVSTLSNLYIFT 57

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              +   R  Y    +  R      ++EI    ++  +          +L       L  
Sbjct: 58  NKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERIISVFDINNLNSDL-----IFLIT 112

Query: 804 SEKGFGKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +  G+ K+ +  D + +     + I    +   +    +V     + +++I+LV++    
Sbjct: 113 TNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYA 172

Query: 863 IRVPVNEIRIASRATKGVVIFSTA-KDERVVS 893
           +R  VNE+ +      GV   +    D+ VVS
Sbjct: 173 LRFDVNEVPLVGPRAAGVKSINLKNDDDYVVS 204


>gi|164456288|dbj|BAF97647.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456294|dbj|BAF97650.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456306|dbj|BAF97656.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456312|dbj|BAF97659.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY+ L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYNTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456320|dbj|BAF97663.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164456324|dbj|BAF97665.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY+ L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYETLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|5453231|gb|AAD43480.1| DNA gyrase subunit A [Staphylococcus simulans]
 gi|5453232|gb|AAD43481.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453233|gb|AAD43482.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453235|gb|AAD43484.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453237|gb|AAD43486.1| DNA gyrase subunit A [Staphylococcus capitis]
          Length = 81

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 68/81 (83%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|124108787|gb|ABM90970.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 74/93 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 93


>gi|46946652|gb|AAT06574.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 110

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/109 (57%), Positives = 85/109 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 2   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRY 61

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           TE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 62  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 110


>gi|315273180|ref|ZP_07869219.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616193|gb|EFR89279.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 171

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 55/189 (29%)

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                  GR + GVRGI L + D+VI M ++   +                         
Sbjct: 4   EENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEK------------------------ 39

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        +L V+EKG+GK+T +  + + NR G G++  
Sbjct: 40  -----------------------------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTV 70

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            +++ N  G LVA+  V   + ++L++  G LIR  +  +    R+  GV +    +DE+
Sbjct: 71  TITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEK 128

Query: 891 VVSVERIRE 899
           V +V ++ +
Sbjct: 129 VATVAKVPK 137



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 75/176 (42%), Gaps = 13/176 (7%)

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            + +    A G   +  + L + + +  +    +DE       V+  T+ G  ++   S 
Sbjct: 6   NIRVMGRTAAG---VRGIRLREDDEVIGMEVLEDDEK------VLVVTEKGYGKQTPASQ 56

Query: 665 FIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +   NR G   K     +    +++++T T E D++L T  G  +RF I       GR++
Sbjct: 57  YPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEI-ETVSQTGRSA 115

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +GV+ I L + ++V ++A V   + + +      + +  Q    S +    + ++ 
Sbjct: 116 MGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLITQVPDESFEDAPGSDIEE 171



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLF 581
              ++   + +  ++ V+ V+  GY K+ P S Y  + RGG G   V + +++  +  + 
Sbjct: 24  EDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMK 83

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            V+    ++  +  G + + ++  +      A G   + ++ L++ E++ T+   P
Sbjct: 84  TVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMG---VKLIRLDEDEKVATVAKVP 136


>gi|5453236|gb|AAD43485.1| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 81

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|164456286|dbj|BAF97646.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYGTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|260100982|gb|ACX31656.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 109

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/107 (58%), Positives = 83/107 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++G
Sbjct: 1   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           QGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N+DG+
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNHDGT 107


>gi|5453246|gb|AAD43495.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|321268246|gb|ADW78931.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268254|gb|ADW78935.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 87/112 (77%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++
Sbjct: 1   HRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVD 60

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 112


>gi|115534553|ref|NP_503483.2| hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
 gi|103472086|gb|AAF60626.2| Hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
          Length = 616

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 24/222 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  ++ +   +K    V+  D +    + ++ N+   R+IP L DG KP  R++LF   +
Sbjct: 44  QQGLAEEYLYDKDTRFVTFKDFVNRELVLFS-NLDNERSIPCLVDGFKPGQRKVLFACFK 102

Query: 63  MGVEWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
                +K  VK A+++G V     + HG  ++   +  +AQD+                 
Sbjct: 103 R---SDKHGVKVAQLAGGVADMSAYHHGEQSLMTTIVHLAQDY----------------G 143

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G   A+ +Y   +L      L      + + F    +   +         P VLVNG  G
Sbjct: 144 GKDSASAQYIFTQLSPVTRTLFPSHDDNVLRFLYEENQRIEPEWYCP-ISPMVLVNGAQG 202

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           I  G  TNIP +N  E+V     +I        AL    +  
Sbjct: 203 IDTGWRTNIPNYNPRELVKNIKRLIAGE--PQKALAPWYKNF 242


>gi|312192221|gb|ADQ43807.1| topoisomerase IV subunit A [Aerococcus urinae]
          Length = 97

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/97 (52%), Positives = 68/97 (70%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M   G   +  + K A+  G V+G YHPHG++++Y+A+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           Q W  R+ LI+  GN GS+DGDP AA RYTE RL K 
Sbjct: 61  QAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARLSKL 97


>gi|313611846|gb|EFR86317.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-208]
          Length = 169

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 55/189 (29%)

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                  GR + GVRGI L + D+VI M ++   +                         
Sbjct: 2   EENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEK------------------------ 37

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        +L V+EKG+GK+T +  + + NR G G++  
Sbjct: 38  -----------------------------VLVVTEKGYGKQTPASQYPLRNRGGMGVKTV 68

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            +++ N  G LVA+  V   + ++L++  G LIR  +  +    R+  GV +    +DE+
Sbjct: 69  TITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEK 126

Query: 891 VVSVERIRE 899
           V +V ++ +
Sbjct: 127 VATVAKVPK 135



 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 75/176 (42%), Gaps = 13/176 (7%)

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            + +    A G   +  + L + + +  +    +DE       V+  T+ G  ++   S 
Sbjct: 4   NIRVMGRTAAG---VRGIRLREDDEVIGMEVLEDDEK------VLVVTEKGYGKQTPASQ 54

Query: 665 FIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +   NR G   K     +    +++++T T E D++L T  G  +RF I       GR++
Sbjct: 55  YPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEI-ETVSQTGRSA 113

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +GV+ I L + ++V ++A V   + + +      + +  Q    S +    + ++ 
Sbjct: 114 MGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLITQVPDESFEDAPGSDIEE 169



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLF 581
              ++   + +  ++ V+ V+  GY K+ P S Y  + RGG G   V + +++  +  + 
Sbjct: 22  EDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMK 81

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            V+    ++  +  G + + ++  +      A G   + ++ L++ E++ T+   P
Sbjct: 82  TVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMG---VKLIRLDEDEKVATVAKVP 134



 Score = 41.4 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             IR+  R   GV      +D+ V+ +E + + E V
Sbjct: 3   ENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKV 38


>gi|5453247|gb|AAD43496.1| DNA gyrase subunit A [Staphylococcus hominis]
 gi|5453248|gb|AAD43497.1| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 81

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|5453230|gb|AAD43479.1| DNA gyrase subunit A [Staphylococcus simulans]
          Length = 81

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|18034055|gb|AAL57340.1|AF397169_1 GyrA [Proteus mirabilis]
          Length = 98

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 78/98 (79%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R 
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|5453251|gb|AAD43500.1| DNA gyrase subunit A [Staphylococcus lugdunensis]
          Length = 81

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVNG 81


>gi|5453240|gb|AAD43489.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453241|gb|AAD43490.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453242|gb|AAD43491.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453243|gb|AAD43492.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453244|gb|AAD43493.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453245|gb|AAD43494.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|5453238|gb|AAD43487.1| DNA gyrase subunit A [Staphylococcus warneri]
          Length = 81

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 68/81 (83%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQ++S R  L++G
Sbjct: 61  IYEAMVRMAQEFSYRYPLVDG 81


>gi|164456296|dbj|BAF97651.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456298|dbj|BAF97652.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456304|dbj|BAF97655.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456322|dbj|BAF97664.1| DNA gyrase subunit A [Corynebacterium mastitidis]
          Length = 112

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++ VDF PNYD    EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENAVDFSPNYDDKTMEPDVLPSRVPNLLMNGSGG 112


>gi|82654941|sp|P0C0Q9|GYRA_STAEP RecName: Full=DNA gyrase subunit A
 gi|240997|gb|AAB20672.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 94

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/92 (56%), Positives = 72/92 (78%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
            Y K ARI G+VMGKYHPHG+++IY+A+ RMA
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMA 94


>gi|146306|gb|AAA23948.1| gyrase A [Escherichia coli]
          Length = 88

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 70/83 (84%)

Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
          + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6  REITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKK 65

Query: 74 CARISGEVMGKYHPHGNAAIYDA 96
           AR+ G+V+GKYHPHG++A+YD 
Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDT 88


>gi|122893199|gb|ABM67556.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYGAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  ++ +    + +++     R+IP + DGLKP  R++++   +  +   KK +
Sbjct: 519 DHRLEEIPYSEFINKELILFSM-ADNIRSIPSVADGLKPGQRKVMWACFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAA 127
           K A++ G +     + HG  ++   +  +AQ++  S  L L++ +G +G+    G   A+
Sbjct: 575 KVAQLVGYIGEQAAYHHGEVSLAQTIVNLAQNFVGSNNLNLLDPRGQYGTREQGGKNHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY   +    +  + +      ++ + + D    EP       P  L+NG  GI  G 
Sbjct: 635 PRYIFTQPMSISRVIFNPADDALLNAQKD-DNMVIEPEWYMPIVPMTLINGAEGIGTGW 692


>gi|321268236|gb|ADW78926.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268238|gb|ADW78927.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268248|gb|ADW78932.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268252|gb|ADW78934.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 87/113 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           QGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 113


>gi|110456319|gb|ABG74700.1| GyrA [Neisseria gonorrhoeae]
          Length = 109

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/109 (56%), Positives = 84/109 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y+ + RMA ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 1   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAHNFAMRYVLIDGQGNFGSVDGLAAAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           TE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 61  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 109


>gi|195956954|gb|ACG59236.1| GyrA [Acinetobacter baumannii]
          Length = 104

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/100 (64%), Positives = 77/100 (77%)

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL D
Sbjct: 5   HPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLAD 64

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           L KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVG
Sbjct: 65  LEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVG 104


>gi|171850797|emb|CAP11081.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            LL++G GNFGSVDGD PAA RYTE ++ K +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLS 92


>gi|52699667|gb|AAU86937.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 98

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + R+AQ +S+R 
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|33316585|gb|AAQ04611.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 147

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP     ARG+ + N+L+    ERI  ++     E   +  Y+V 
Sbjct: 12  FFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKSYE---DAPYLVL 68

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT++G V+++KL+DF      G +A+ L   DE++    C+ E D+LL +  GQ +RF  
Sbjct: 69  ATQNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEEDLLLVSANGQSIRFSA 128

Query: 711 SAIRVF-AGRNSVGVRG 726
           +   +   GR + GV+ 
Sbjct: 129 TDDALRPMGRATSGVQA 145



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            E  I++    +      +++  ++ G  K++   DF  SNRSG GI A ++   +E   
Sbjct: 47  TEERIAQVIQIKSYEDAPYLVLATQNGLVKKSKLTDFD-SNRSG-GIVAINLRGEDE--- 101

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGV 880
           LV     +  + ++LVS  G  IR    +  +R   RAT GV
Sbjct: 102 LVGAVLCSAEEDLLLVSANGQSIRFSATDDALRPMGRATSGV 143


>gi|122893193|gb|ABM67553.1| DNA gyrase [Staphylococcus intermedius]
 gi|122893201|gb|ABM67557.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 67/79 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|321268256|gb|ADW78936.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 86/111 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           QGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 111


>gi|45738080|gb|AAS75837.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Kentucky]
          Length = 104

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 79/104 (75%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|5453252|gb|AAD43501.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 81

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ R AQD+S R  L++G
Sbjct: 61  IYEAMVRKAQDFSYRYPLVDG 81


>gi|325519491|gb|EGC98872.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 108

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +  G  ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPGADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLR 108


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 10/179 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  +D +    + +++     R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNMDEIPFSDFINKELILFSM-ADNIRSIPSVADGLKPGQRKVVWGCFKRKL---KKEI 574

Query: 73  KCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAA 127
           K A++ G +     + HG A++   +  +AQ++  S  + L++  G +G+ D  G   A+
Sbjct: 575 KVAQLVGYISEHAAYHHGEASLAATIINLAQNYVGSNNINLLKPNGQYGTRDQGGKDHAS 634

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RY    +      +    G   +  R   D    EP       P VLVNG  GI  G 
Sbjct: 635 PRYIYTEVMPLTRMICHPAGDPLLK-RQTDDNLLVEPEWYMPVVPLVLVNGAEGIGTGW 692


>gi|122893191|gb|ABM67552.1| DNA gyrase [Staphylococcus intermedius]
          Length = 79

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|124108797|gb|ABM90975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108801|gb|ABM90977.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 91


>gi|45550208|gb|AAS67882.1| GyrA [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 104

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|171850789|emb|CAP11077.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850791|emb|CAP11078.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850793|emb|CAP11079.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            LL++G GNFGSVDGD PAA RYTE ++ K +
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLS 92


>gi|85707862|ref|ZP_01038928.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689396|gb|EAQ29399.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 156

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   + D +E   I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MAEPTTTDDSDEFDTIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
            Q+ ++ +  + K AR+ GEV+GKYHPHG+ A YDA+ R+AQ
Sbjct: 61  RQLKLDPSSGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQ 102


>gi|295315161|gb|ADF97668.1| gyrase subunit A [Campylobacter coli]
 gi|295315167|gb|ADF97671.1| gyrase subunit A [Campylobacter coli]
 gi|295315169|gb|ADF97672.1| gyrase subunit A [Campylobacter coli]
 gi|295315171|gb|ADF97673.1| gyrase subunit A [Campylobacter coli]
 gi|295315173|gb|ADF97674.1| gyrase subunit A [Campylobacter coli]
 gi|295315179|gb|ADF97677.1| gyrase subunit A [Campylobacter coli]
 gi|295315181|gb|ADF97678.1| gyrase subunit A [Campylobacter coli]
 gi|295315185|gb|ADF97680.1| gyrase subunit A [Campylobacter coli]
 gi|295315187|gb|ADF97681.1| gyrase subunit A [Campylobacter coli]
 gi|295315189|gb|ADF97682.1| gyrase subunit A [Campylobacter coli]
 gi|295315191|gb|ADF97683.1| gyrase subunit A [Campylobacter coli]
 gi|295315193|gb|ADF97684.1| gyrase subunit A [Campylobacter coli]
 gi|295315195|gb|ADF97685.1| gyrase subunit A [Campylobacter coli]
 gi|295315197|gb|ADF97686.1| gyrase subunit A [Campylobacter coli]
 gi|295315201|gb|ADF97688.1| gyrase subunit A [Campylobacter coli]
 gi|295315203|gb|ADF97689.1| gyrase subunit A [Campylobacter coli]
 gi|295315211|gb|ADF97693.1| gyrase subunit A [Campylobacter coli]
 gi|295315213|gb|ADF97694.1| gyrase subunit A [Campylobacter coli]
 gi|295315217|gb|ADF97696.1| gyrase subunit A [Campylobacter coli]
 gi|295315219|gb|ADF97697.1| gyrase subunit A [Campylobacter coli]
 gi|295315221|gb|ADF97698.1| gyrase subunit A [Campylobacter coli]
 gi|295315223|gb|ADF97699.1| gyrase subunit A [Campylobacter coli]
 gi|295315225|gb|ADF97700.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 65/84 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPP 125
           QD+S+R   I+GQGNFGS+DGD  
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|16754840|emb|CAD10663.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|124108795|gb|ABM90974.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 91


>gi|254718873|ref|ZP_05180684.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 305

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 27/269 (10%)

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGL-L 525
           +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT        
Sbjct: 1   EIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMH 60

Query: 526 DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           D+ED     I RE + + VS  G++        RA +      S +  ++ D +   F  
Sbjct: 61  DLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKLAFHA 112

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
            T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T           
Sbjct: 113 ETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTAFV------HD 164

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            +  ++  +  GN      S+ +   R GK  M + + DE    +  +  + I +  +  
Sbjct: 165 PSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSG-DHIAVVGENR 223

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + + FP+S I         GVR      G
Sbjct: 224 KMLVFPLSDIPEMT--RGKGVRLQKYKDG 250


>gi|65431749|gb|AAY42594.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 62/86 (72%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY+ L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYT 131
           LR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|69250185|ref|ZP_00605121.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
 gi|68193993|gb|EAN08553.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
          Length = 120

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/118 (38%), Positives = 75/118 (63%), Gaps = 3/118 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 3   KNAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 62

Query: 86  HPHGNAAIYDALARMAQDWS--LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAH 140
           HPHG++A Y+A+  MAQ +S  +R L++ G G   ++ +           CR   + +
Sbjct: 63  HPHGDSACYEAMVLMAQPFSTVIRWLMVRGTGARRTIRNRSRQCVTPNPGCRNIPSCY 120


>gi|319444107|gb|ADV58131.1| GyrA [Acinetobacter baumannii]
          Length = 102

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH 
Sbjct: 1   IGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHE 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIA
Sbjct: 61  LLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIA 102


>gi|124108773|gb|ABM90963.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108775|gb|ABM90964.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108777|gb|ABM90965.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108779|gb|ABM90966.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108781|gb|ABM90967.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108783|gb|ABM90968.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 91


>gi|16754842|emb|CAD10664.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|284027757|gb|ADB66703.1| ParC [Salmonella enterica subsp. enterica]
          Length = 86

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 60/84 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 2   YSMYVIIDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQG 115
           A Y+A+  MA  +S R  L++G G
Sbjct: 62  AYYEAMVLMALPFSYRNPLVDGHG 85


>gi|313640113|gb|EFS04735.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 140

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   ++ +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V   +
Sbjct: 2   EVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEE 59

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 60  DLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 107



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDI 696
           E   ++  V+  T+ G  ++   S +   NR G   K     +    +++++T T E D+
Sbjct: 2   EVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDL 61

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +L T  G  +RF I       GR+++GV+ I L + ++V ++A V 
Sbjct: 62  MLMTVSGVLIRFEI-DTVSQTGRSAMGVKLIRLDEDEKVATVAKVP 106



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 4/109 (3%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTS 588
            + +  ++ V+ V+  GY K+ P S Y  + RGG G   V + +++  +  +  V+    
Sbjct: 1   MEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEED 60

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           ++  +  G + + ++  +      A G   + ++ L++ E++ T+   P
Sbjct: 61  LMLMTVSGVLIRFEIDTVSQTGRSAMG---VKLIRLDEDEKVATVAKVP 106


>gi|65431631|gb|AAY42593.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 61/86 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYT 131
           LR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|295315175|gb|ADF97675.1| gyrase subunit A [Campylobacter coli]
 gi|295315183|gb|ADF97679.1| gyrase subunit A [Campylobacter coli]
 gi|295315199|gb|ADF97687.1| gyrase subunit A [Campylobacter coli]
 gi|295315205|gb|ADF97690.1| gyrase subunit A [Campylobacter coli]
 gi|295315207|gb|ADF97691.1| gyrase subunit A [Campylobacter coli]
 gi|295315209|gb|ADF97692.1| gyrase subunit A [Campylobacter coli]
 gi|295315215|gb|ADF97695.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 65/84 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPP 125
           QD+S+R   I+GQGNFGS+DGD  
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|321268242|gb|ADW78929.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 86/112 (76%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 112


>gi|321268234|gb|ADW78925.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|309800472|ref|ZP_07694627.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
 gi|308115891|gb|EFO53412.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
          Length = 144

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 55/194 (28%)

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R + GV+G++L +GD V+   ++                                   
Sbjct: 1   MSRIATGVKGVNLREGDAVVGARVI----------------------------------- 25

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               +  +L ++EKG+GKRT + ++    R+GKG++  +V++ N
Sbjct: 26  ------------------TDQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANVTEKN 67

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G L  +  V  ++ +++++D G +IR  V  I    R+T GV +    +D ++V+   
Sbjct: 68  --GPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTS 125

Query: 897 IRESEIVDEAESTE 910
           +  +E  +     E
Sbjct: 126 VAAAEKEEVGAEQE 139



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 63/142 (44%), Gaps = 13/142 (9%)

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A G   +  ++L +G+ +       + +       V+  T+ G  +R   +++   
Sbjct: 1   MSRIATG---VKGVNLREGDAVVGARVITDQDE------VLIITEKGYGKRTVATEYPTK 51

Query: 669 NRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            R+GK    A   +    +  + T   + D+++ T  G  +R  ++ I    GR+++GV+
Sbjct: 52  GRAGKGMKTANVTEKNGPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQ-TGRSTMGVK 110

Query: 726 GISLAKGDQVISMAIVLHADAD 747
            + L +  ++++   V  A+ +
Sbjct: 111 VMRLDQDAKIVTFTSVAAAEKE 132



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            +D V+ ++  GY KR   + Y  + R GKG ++  V      +  L  V     ++  +
Sbjct: 27  DQDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANVTEKNGPLAGLLTVKGDEDLMIIT 86

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
             G + +  V  +        G   + ++ L+Q  +I T       E   
Sbjct: 87  DTGVMIRTNVANISQTGRSTMG---VKVMRLDQDAKIVTFTSVAAAEKEE 133


>gi|284052889|ref|ZP_06383099.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 350

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 141/404 (34%), Gaps = 102/404 (25%)

Query: 504 ELLSVKDELDTPRRTRIV-----------------------EGLLDMEDEDCIVREDMVV 540
           EL S+K     PRRTRIV                            +        E+ +V
Sbjct: 1   ELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETLV 60

Query: 541 TVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            ++  GYV+RV P ++ R Q R       +    +DF    ++ +T  +++  + +G  Y
Sbjct: 61  EMTLRGYVRRVTPHNLSRPQSREDITIEAI----DDFPVTSYLTTTAETLVIINRMGKAY 116

Query: 600 KEKVWRLPIGSPQARGKALINILS-------------------LNQGERITTIMPFPE-- 638
              V  +P  S ++RG  LI +LS                   L  G + + + P  +  
Sbjct: 117 PLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDAD 176

Query: 639 --DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
             + +  +   ++  +  G ++R   +DF+ ++  G   MKL   DE+         + +
Sbjct: 177 QRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQV 236

Query: 697 LLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +L T  G+ +R  I+       GR + G     L K +Q++   I L +  + + +   +
Sbjct: 237 VLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVG-CITLSSTGELNNKFILL 295

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                          VSE+G+ KR S  
Sbjct: 296 -----------------------------------------------VSEQGYFKRISLQ 308

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
             + S R G G +       N+  A   +      + I  ++ +
Sbjct: 309 SLQRSRRGGIGTQMLQFHSRND--ACRGLVATTPGEAIYCLTSE 350



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 88/245 (35%), Gaps = 32/245 (13%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G VRR    +  +      I ++    D  ++    T    +++  ++G+     ++
Sbjct: 63  TLRGYVRRVTPHNLSRPQSREDITIEAID-DFPVTSYLTTTAETLVIINRMGKAYPLNVA 121

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            I   +   S GV  I+L          +   A  D   R   +   +     +      
Sbjct: 122 DIPSVSL-KSRGVPLITL----------LSPSATKDASTRPQDLIVAAFLGAGLQS---- 166

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRAT 830
                  S V      ++ +     +  ++ +S +G  KR S  DF  +S R        
Sbjct: 167 -------SPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARG------I 213

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR--VPVNEIRIASRATKGVVIFSTAKD 888
            V K+ +   L         DQ++L +  G L+R  +  ++I +  R  +G V     K+
Sbjct: 214 TVMKLKDNDELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKN 273

Query: 889 ERVVS 893
           E++V 
Sbjct: 274 EQLVG 278


>gi|49354925|gb|AAT65185.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 79/101 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|61654895|gb|AAX48942.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654897|gb|AAX48943.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654899|gb|AAX48944.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654907|gb|AAX48948.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  
Sbjct: 62  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 121


>gi|18389162|gb|AAL67640.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389164|gb|AAL67641.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389166|gb|AAL67642.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389168|gb|AAL67643.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389170|gb|AAL67644.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389172|gb|AAL67645.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389174|gb|AAL67646.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389176|gb|AAL67647.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389178|gb|AAL67648.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 120

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 84/120 (70%), Gaps = 1/120 (0%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 1   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 GDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  
Sbjct: 61  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 120


>gi|321268232|gb|ADW78924.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268244|gb|ADW78930.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 110

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|16923696|gb|AAL31544.1|AF435074_9 DNA gyrase A [Corynebacterium glutamicum]
          Length = 140

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           +F+L  +  G+GKRT   D+    R G G+     +   + G LV+   V ++D+I  ++
Sbjct: 1   EFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTP--KRGRLVSAIAVEEDDEIFAIT 58

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             G ++R  V +IR +SRAT GV + +  +   ++++++  E +    AE+
Sbjct: 59  SAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVEDQGEASAEA 109



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 4/133 (3%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSL 595
           + ++  +  GY KR PL  Y  Q RGG G        +   +     V     +   +S 
Sbjct: 1   EFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSA 60

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V + +V ++   S    G  L+N   L +G  +  I    ED+   +   V      G
Sbjct: 61  GGVVRTEVKQIRPSSRATMGVRLVN---LEEGVELLAIDKNVEDQGEASAEAVAKGAVEG 117

Query: 656 NVRRNKLSDFIQI 668
              +    +   +
Sbjct: 118 PASKTAAEETDSV 130


>gi|91093519|gb|ABE11581.1| ParC [Escherichia coli]
 gi|91093593|gb|ABE11592.1| ParC [Escherichia coli]
          Length = 108

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 69/99 (69%), Gaps = 1/99 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
            +S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 99


>gi|1333777|emb|CAA43745.1| unnamed protein product [Mycoplasma genitalium]
          Length = 131

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 4/130 (3%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T+S  GY+KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  
Sbjct: 6   ENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDK 65

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ +  ++P G    +G   +N++ + + ERI +++         ++ Y  F TK+G
Sbjct: 66  GKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNG 121

Query: 656 NVRRNKLSDF 665
            V+R  L++F
Sbjct: 122 IVKRTSLNEF 131



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T+S  G+ KR     + + +R G G++       + I  L      + +  ++  
Sbjct: 6   ENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQL---LVCSTHSDLLFF 62

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
           +DKG + R+  ++I    R  KG   V +    KDER+ S+  +   + 
Sbjct: 63  TDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDD 111



 Score = 41.4 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--II 854
              +L  ++KG   R  ++      R+ KGI A ++ KI +   + ++  VN+ D     
Sbjct: 56  HSDLLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFF 115

Query: 855 LVSDKGTLIRVPVNE 869
             +  G + R  +NE
Sbjct: 116 FCTKNGIVKRTSLNE 130



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 13/136 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI-------V 741
               EN ++  +  G   R  + A  +   R  VGV+G++    D +  + +       +
Sbjct: 2   LIKVENVVITMSTNGYLKRIGVDAYNL-QHRGGVGVKGLTTYVDDSISQLLVCSTHSDLL 60

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
              D     RI   +     R         +  ++ D  +   +S          + +  
Sbjct: 61  FFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYD-----DGYFF 115

Query: 802 TVSEKGFGKRTSSYDF 817
             ++ G  KRTS  +F
Sbjct: 116 FCTKNGIVKRTSLNEF 131


>gi|49354928|gb|AAT65186.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 78/101 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|61654901|gb|AAX48945.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654903|gb|AAX48946.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654905|gb|AAX48947.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/120 (49%), Positives = 83/120 (69%), Gaps = 1/120 (0%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  
Sbjct: 62  DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTT 121


>gi|91093517|gb|ABE11580.1| ParC [Escherichia coli]
 gi|91093521|gb|ABE11582.1| ParC [Escherichia coli]
 gi|91093523|gb|ABE11583.1| ParC [Escherichia coli]
 gi|91093527|gb|ABE11585.1| ParC [Escherichia coli]
 gi|91093531|gb|ABE11587.1| ParC [Escherichia coli]
 gi|91093551|gb|ABE11590.1| ParC [Escherichia coli]
 gi|91093585|gb|ABE11591.1| ParC [Escherichia coli]
 gi|91093595|gb|ABE11593.1| ParC [Escherichia coli]
          Length = 108

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
            +S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 61  PFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 99


>gi|65431527|gb|AAY42592.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 84

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAER 129
           LR  L++GQGNFGS   DPPAA R
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMR 84


>gi|47420010|gb|AAT27357.1| DNA gyrase A [Campylobacter lari]
          Length = 157

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 26/181 (14%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S + V M+A++  +P+ F+   +L  F+  R+ V++RRT Y L 
Sbjct: 2   MSEIVLNNLFKSTTMESTWGVIMLAIHNKEPKVFSFFELLNLFLNHRKTVIIRRTIYELQ 61

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+                  
Sbjct: 62  KARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK------------------ 103

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+    IL S + L 
Sbjct: 104 --------FGLSELQSNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSETLLE 155

Query: 499 G 499
            
Sbjct: 156 N 156


>gi|312207855|pdb|3KU8|A Chain A, Ccdbvfi:gyra14ec
 gi|312207856|pdb|3KU8|B Chain B, Ccdbvfi:gyra14ec
          Length = 156

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 8/137 (5%)

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++
Sbjct: 20  HMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 79

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   
Sbjct: 80  AAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE 139

Query: 480 LGIEIKECLDILSSRSR 496
           L  +I E L IL S  R
Sbjct: 140 LLDQIAELLRILGSADR 156


>gi|190589934|gb|ACE79226.1| DNA gyrase [Pseudomonas aeruginosa]
 gi|190589936|gb|ACE79227.1| DNA gyrase [Pseudomonas aeruginosa]
          Length = 98

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 76/98 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+
Sbjct: 61  KLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNL 98


>gi|218662255|ref|ZP_03518185.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 125

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/84 (79%), Positives = 70/84 (83%)

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
           YDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRIAS
Sbjct: 1   YDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIAS 60

Query: 875 RATKGVVIFSTAKDERVVSVERIR 898
           RATKGV IFSTAKDE+VVSVERI 
Sbjct: 61  RATKGVTIFSTAKDEKVVSVERIS 84



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++       + I+L +  GQ +R P+  IR+ A R + GV   S AK ++V+S+  + 
Sbjct: 26  ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRI-ASRATKGVTIFSTAKDEKVVSVERIS 84

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
             + D  E        +      S     +         E
Sbjct: 85  EPEEDETEEAVETAEGAPVAEEGSTGETPVADGDPTGPAE 124


>gi|33322875|gb|AAQ07174.1|AF496482_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 138

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/138 (50%), Positives = 102/138 (73%)

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G+IV+R  + IE     RE+I
Sbjct: 1   KNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKGNIVVRAKTEIETEKSGRERI 60

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           +V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ G R+ I+++R ASA V+LN 
Sbjct: 61  IVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQSGMRITIDVRRDASASVVLNN 120

Query: 327 LYRYTSLQSLFSVNMVAL 344
           L++ T +QS F++NMVA+
Sbjct: 121 LFKETQMQSNFAMNMVAI 138


>gi|506869|dbj|BAA03133.1| DNA topoisomerase IIB [Rattus norvegicus]
          Length = 214

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 28/234 (11%)

Query: 75  ARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           A+++G V     + HG  A+   +  +AQ++  S  + L++  G FG+    G   A+ R
Sbjct: 1   AQLAGSVAEMSAYHHGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y    L   A  L   +  + + F  + D    EP       P VL+NG  GI  G A  
Sbjct: 61  YIFTMLSSLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACK 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P ++  E+VD    +++  D            P  P      G          G+    
Sbjct: 120 LPNYDAREIVDNVRRMLEGLD----------PHPMLPNYKNFKGT-----IQELGQNQYA 164

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLR 300
           + G    E    DR  +  TE+P +       E++ E +    +K    I+D +
Sbjct: 165 VSG----EIFVVDRNTVETTELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYK 214


>gi|3282089|emb|CAA07512.1| topoisomerase II subunit A [Thermotoga neapolitana]
          Length = 139

 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 56/195 (28%)

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RFP+S +R    RN+ GV+ I L  GD+V+SM +                        
Sbjct: 1   IIRFPVSDVRRMG-RNAAGVQAIKLQPGDEVVSMDV------------------------ 35

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                       +  +E  ILTV+EKGFGKRT    +R+  R G
Sbjct: 36  ----------------------------VPSEEGEILTVTEKGFGKRTPVQLYRVQKRGG 67

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+R  ++S +N+ G +VAV  V  +++I++V+  G +IR+PV+EI +  R TKGV +  
Sbjct: 68  TGLR--NISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIE 125

Query: 885 TAKDERVVSVERIRE 899
              D+ +  V  +++
Sbjct: 126 LG-DDTISKVAVVKD 139



 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +IR PV+++R   R   GV        + VVS++ +   E  
Sbjct: 1   IIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGE 42



 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFV 577
           ++  G   +  +     E  ++TV+  G+ KR P+ +YR Q+RGG G R+   +     V
Sbjct: 23  KLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRNISDVNKTGHV 82

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             +  V     ++  +  G + +  V  + +     +G  LI +      + I+ +    
Sbjct: 83  VAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIEL----GDDTISKVAVVK 138

Query: 638 E 638
           +
Sbjct: 139 D 139



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 9/147 (6%)

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS-VLFFSSLGFVYKEKVWRL 606
           + R P+S  R   R   G   + ++  D V  + +V +    +L  +  GF  +  V   
Sbjct: 1   IIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTEKGFGKRTPVQLY 60

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            +      G  L NI  +N+   +  +     DE       +V  T++G + R  +S+  
Sbjct: 61  RVQKRGGTG--LRNISDVNKTGHVVAVRYVKGDEE------IVVVTRNGMMIRMPVSEIG 112

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQE 693
            I R  K    ++  D+ +S     ++
Sbjct: 113 VIGRVTKGVKLIELGDDTISKVAVVKD 139


>gi|289677155|ref|ZP_06498045.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 82

 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 62/79 (78%)

Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
          E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3  ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71 YVKCARISGEVMGKYHPHG 89
          Y K AR+ G+V+GKYHP G
Sbjct: 63 YKKSARVVGDVIGKYHPPG 81


>gi|33322684|gb|AAQ07076.1|AF496389_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 103

 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 80/103 (77%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PAA RYTE 
Sbjct: 1   SARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LV
Sbjct: 61  RMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLV 103


>gi|29165271|gb|AAO65576.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 101

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/100 (61%), Positives = 78/100 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 62  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 101


>gi|3044112|gb|AAC13292.1| DNA gyrase subunit A [Moraxella catarrhalis]
          Length = 107

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/107 (57%), Positives = 77/107 (71%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  
Sbjct: 1   NWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           AA RYTE R+ K AH LL DL K+T     NYDG+ Q P V+  + P
Sbjct: 61  AAMRYTEVRMAKLAHELLADLEKETGRLGANYDGTEQIPAVMPTKIP 107


>gi|313192284|emb|CBY05950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/102 (58%), Positives = 79/102 (77%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
               +G++WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 5   YACVLGMDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 64

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           S+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 65  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGN 106


>gi|29165281|gb|AAO65581.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Kottbus]
          Length = 100

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 61/100 (61%), Positives = 77/100 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|321268240|gb|ADW78928.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 106

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 60/106 (56%), Positives = 83/106 (78%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDN 106


>gi|38305350|gb|AAR16193.1| antigen MLAA-44 [Homo sapiens]
          Length = 373

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 136/373 (36%), Gaps = 41/373 (10%)

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
            D    EP       P VL+NG  GI  G A  +P ++  E+V+    +++  D      
Sbjct: 10  DDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD------ 63

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
                 P  P      G          G+    + G    E    DR  + +TE+P +  
Sbjct: 64  ----PHPMLPNYKNFKGT-----IQELGQNQYAVSG----EIFVVDRNTVEITELPVRTW 110

Query: 277 KAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                E++ E +    +K    I+D ++       + V+++     A      L++   L
Sbjct: 111 TQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKL 170

Query: 334 QSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVG 389
           Q+  + N + L  +     +  T+  ILK F   R      R ++L+     +   +   
Sbjct: 171 QTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQ 230

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
               +  +   + I   S   +   + L+QR + +  +K   +  + ++    S      
Sbjct: 231 ARFILEKIQGKITIENRSK--KDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQHDD 288

Query: 450 SEVQT--------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
           S   +          IL + L  LT    +++  + ++ G E+ +      S S L    
Sbjct: 289 SSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLW--- 343

Query: 502 KQELLSVKDELDT 514
           K++L +  +ELD 
Sbjct: 344 KEDLAAFVEELDK 356


>gi|254047463|gb|ACT63871.1| DNA gyrase subunit A [Escherichia coli]
          Length = 100

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 75/100 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 100


>gi|42718129|gb|AAS38488.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 61/98 (62%), Positives = 77/98 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 2   ANKKYVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           A RYTE R+QK    LL DL K+TV+F PNYDG    P
Sbjct: 62  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 140/400 (35%), Gaps = 36/400 (9%)

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
                 +Y    +   A  L   +    + F  + D    EP       P VLVNG  GI 
Sbjct: 742  HARQPQYLCTMVPPLARLLFPAMDDSVLKFMYD-DNQKVEPEWYIPIIPTVLVNGAEGIG 800

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +  IP ++  E+V     ++D  +            P  P+     G          
Sbjct: 801  TGWSCKIPNYDTREIVSNIGRLLDGLE----------PLPMLPSYKNFKGL-----IQEL 845

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLR 300
            G    ++ G    E +  D   I ++E+P +       E++ E +    EK    I D +
Sbjct: 846  GPNQYILNG----EVSVLDNTTIEISELPVRTWTQNYKEQVLEPMLNGTEKTPPLITDYK 901

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLIGI 357
            +       + V++L      +     L++   LQ+  + N + L  +     +  T   I
Sbjct: 902  EYHTDTTVKFVVKLTEQKLMEAEAAGLHKVFKLQTPLTCNSMVLFDHVGCLRKYETATDI 961

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            L+ F   R +    R  +L+      A  L   A  +    E   +I   P  +   + L
Sbjct: 962  LREFFVLRLKYYSLRKDWLVGMLTAEASRLSNQARFILEKIEGKIVIENKP-KKELIQML 1020

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGRDDI 473
            +QR +++  +K      +        +                +L + L  L+   +D++
Sbjct: 1021 VQRGYDSDPVKSWKQTQEKEEAGELLEEEEETEVNTAGPDFNYLLGMPLWNLSKEKKDEL 1080

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              + +    E+++      S S L    K++L +  +ELD
Sbjct: 1081 CKQRDVKNAELQDLKK--KSPSDLW---KEDLSAFVEELD 1115


>gi|290578697|gb|ADD51245.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|290578681|gb|ADD51237.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578683|gb|ADD51238.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578685|gb|ADD51239.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTITV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|91093529|gb|ABE11586.1| ParC [Escherichia coli]
          Length = 107

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/97 (49%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +
Sbjct: 2   IGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPF 61

Query: 105 SLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 62  SYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 98


>gi|60651670|gb|AAX32846.1| GyrA [Riemerella anatipestifer]
          Length = 105

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 79/103 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +GM ++GV  NKKY+  AR  G+V+GKYHPHG+ ++YD + RMAQ WSLR   ++GQGNF
Sbjct: 1   YGMYRLGVFSNKKYLTSARNVGDVLGKYHPHGDRSVYDHMVRMAQPWSLRYPQVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GS+DGDPPAA RYTE RL+K +  +L DL K+T DF+ N+D S
Sbjct: 61  GSMDGDPPAAMRYTEARLKKISDEILSDLDKETADFQNNFDDS 103


>gi|65431837|gb|AAY42595.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 80

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 56/80 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYYTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPP 125
           LR  L++GQGNFGS   DPP
Sbjct: 61  LRYPLVDGQGNFGSPGNDPP 80


>gi|290578687|gb|ADD51240.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578689|gb|ADD51241.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578691|gb|ADD51242.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578693|gb|ADD51243.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578695|gb|ADD51244.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578699|gb|ADD51246.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578703|gb|ADD51248.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578705|gb|ADD51249.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578707|gb|ADD51250.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578709|gb|ADD51251.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578711|gb|ADD51252.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578713|gb|ADD51253.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578715|gb|ADD51254.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578717|gb|ADD51255.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|29165273|gb|AAO65577.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 100

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/100 (62%), Positives = 77/100 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|11761922|gb|AAG40244.1|AF303623_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761944|gb|AAG40255.1|AF303634_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761976|gb|AAG40271.1|AF303650_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761978|gb|AAG40272.1|AF303651_1 topoisomerase IV subunit C [Raoultella terrigena]
 gi|11761980|gb|AAG40273.1|AF303652_1 topoisomerase IV subunit C [Raoultella ornithinolytica]
 gi|11761986|gb|AAG40276.1|AF303655_1 topoisomerase IV subunit C [Raoultella planticola]
          Length = 106

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILL 106


>gi|319827196|gb|ADV74815.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG++ IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSPIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|11761962|gb|AAG40264.1|AF303643_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|4469257|emb|CAB38319.1| topoisomerase IV [Klebsiella oxytoca]
          Length = 106

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/106 (52%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP ++ AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMMPARLPNILL 106


>gi|17932925|emb|CAC84235.1| gyrase A [Stenotrophomonas maltophilia]
          Length = 100

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 74/98 (75%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +    NK Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           D  AA RYTE R+ + AH L+ D+ K+TVDF+PNYD  
Sbjct: 61  DSAAAMRYTEARMSRLAHELMADIDKETVDFQPNYDEK 98


>gi|67464191|pdb|1X75|A Chain A, Ccdb:gyra14 Complex
 gi|67464192|pdb|1X75|B Chain B, Ccdb:gyra14 Complex
          Length = 132

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 8/132 (6%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  
Sbjct: 1   TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 60

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L 
Sbjct: 61  MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 120

Query: 482 IEIKECLDILSS 493
            +I E L IL S
Sbjct: 121 DQIAELLRILGS 132


>gi|34604732|gb|AAQ79817.1| GyrA [Escherichia coli]
          Length = 79

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|91093525|gb|ABE11584.1| ParC [Escherichia coli]
 gi|91093535|gb|ABE11589.1| ParC [Escherichia coli]
          Length = 105

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 1/95 (1%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 2   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 61

Query: 107 RLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 62  RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 96


>gi|34604736|gb|AAQ79819.1| GyrA [Escherichia coli]
          Length = 79

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 63/79 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|11761920|gb|AAG40243.1|AF303622_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761924|gb|AAG40245.1|AF303624_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761926|gb|AAG40246.1|AF303625_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761928|gb|AAG40247.1|AF303626_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761930|gb|AAG40248.1|AF303627_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761932|gb|AAG40249.1|AF303628_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761934|gb|AAG40250.1|AF303629_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761938|gb|AAG40252.1|AF303631_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761940|gb|AAG40253.1|AF303632_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761942|gb|AAG40254.1|AF303633_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761946|gb|AAG40256.1|AF303635_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761948|gb|AAG40257.1|AF303636_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761950|gb|AAG40258.1|AF303637_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761952|gb|AAG40259.1|AF303638_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761958|gb|AAG40262.1|AF303641_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761960|gb|AAG40263.1|AF303642_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761970|gb|AAG40268.1|AF303647_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761982|gb|AAG40274.1|AF303653_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761984|gb|AAG40275.1|AF303654_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
          Length = 106

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761966|gb|AAG40266.1|AF303645_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 106

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG++A Y A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|144225422|emb|CAM84042.1| DNA gyrase B [Legionella dresdenensis]
          Length = 100

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/100 (60%), Positives = 76/100 (76%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDMAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E R+ K AH LL DL K+TVDF PNYD +   P+VL +R 
Sbjct: 61  EVRMSKVAHALLADLEKETVDFTPNYDETEFAPIVLPSRV 100


>gi|28629432|gb|AAO32079.1| topoisomerase IV [Acinetobacter genomosp. 3]
          Length = 109

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           LIEGQGN+GS D     AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|295315177|gb|ADF97676.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I+GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|319827192|gb|ADV74813.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 79/116 (68%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|42718131|gb|AAS38489.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718133|gb|AAS38490.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718135|gb|AAS38491.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 76/98 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 2   ANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           A RYTE R+QK    LL DL K+TV+F PNYDG    P
Sbjct: 62  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|169809390|gb|ACA84165.1| GyrA [Veillonella dispar]
          Length = 87

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 68/81 (83%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7  QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72 VKCARISGEVMGKYHPHGNAA 92
           K ARI+G+VMGKYHPHG+++
Sbjct: 67 KKSARITGDVMGKYHPHGDSS 87


>gi|164604815|gb|ABY61968.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL 
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|28629434|gb|AAO32080.1| topoisomerase IV [Acinetobacter genomosp. 13]
          Length = 109

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/109 (47%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           LIEGQGN+GS D     AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 61  LIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|60651666|gb|AAX32844.1| GyrA [Riemerella anatipestifer]
          Length = 83

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/83 (67%), Positives = 69/83 (83%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+GM  +GV  NKKY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   
Sbjct: 1   PVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQ 60

Query: 111 IEGQGNFGSVDGDPPAAERYTEC 133
           ++GQGNFGS+DGDPPAA RYTE 
Sbjct: 61  VDGQGNFGSMDGDPPAAMRYTEA 83


>gi|319827190|gb|ADV74812.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|409090|dbj|BAA03132.1| DNA topoisomerase IIA [Rattus norvegicus]
          Length = 214

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 30/235 (12%)

Query: 75  ARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
           A+++G V     + HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ R
Sbjct: 1   AQLAGSVAEMSSYHHGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y    L   A  L       T+ F  + D    EP       P VL+NG  GI  G +  
Sbjct: 61  YIFTMLSPLARLLFPSKDDHTLRFLYD-DNQRVEPEWYILIIPMVLINGAEGIGTGWSCK 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSI 248
           IP  ++ EVV+    ++D  +            P  P+     G    + +      G +
Sbjct: 120 IPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIEELASNQYVINGEV 169

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLR 300
            I   + IE          +TE+P +       E++ E +    EK    I D R
Sbjct: 170 AILNSTTIE----------ITELPIRTWTQTYKEQVLEPMLNGTEKTPPLITDYR 214


>gi|260667425|gb|ACX47923.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 98

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 76/98 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 60

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 98


>gi|259089987|gb|ACV91834.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667427|gb|ACX47924.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667429|gb|ACX47925.1| DNA gyrase subunit A [Escherichia coli]
          Length = 98

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/98 (58%), Positives = 74/98 (75%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 60

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN
Sbjct: 61  AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 98


>gi|39980706|gb|AAR33047.1| gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 101

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 77/101 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 101


>gi|11761956|gb|AAG40261.1|AF303640_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|312207859|pdb|3KUA|A Chain A, Ccdbvfi:gyra14vfi
 gi|312207860|pdb|3KUA|B Chain B, Ccdbvfi:gyra14vfi
          Length = 153

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 8/134 (5%)

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P  A+  L+ R W+  ++
Sbjct: 20  HMTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNV 79

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +++     +             +G  +L+E Q +AILELRL RLTGL  + I +E  +
Sbjct: 80  ASMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKA 139

Query: 480 LGIEIKECLDILSS 493
           L  EI E + IL+S
Sbjct: 140 LLDEIAELMHILAS 153


>gi|34604734|gb|AAQ79818.1| GyrA [Escherichia coli]
          Length = 79

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 64/79 (81%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|1536962|emb|CAA69173.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 102

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 80/102 (78%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVD 102


>gi|319827194|gb|ADV74814.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                +  IT + I+D +    + ++++  + R+IP + DG KP  R++L+G  +  +  
Sbjct: 624 PGTHLDPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRS 682

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
             K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 683 EIKVAQLAGYVSENTGYHH--GEQSLVPTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGK 740

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             +A RY    L +    + + L      +  + + + +   
Sbjct: 741 DFSAARYIFTELSEITRKIFNPLDDPLYTYVQDDEQTVEPEW 782


>gi|11761936|gb|AAG40251.1|AF303630_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761954|gb|AAG40260.1|AF303639_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761964|gb|AAG40265.1|AF303644_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761968|gb|AAG40267.1|AF303646_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761972|gb|AAG40269.1|AF303648_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|29165298|gb|AAO65582.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 99

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/99 (60%), Positives = 77/99 (77%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 99


>gi|22953852|gb|AAM21723.1| topoisomerase IV subunit A [Legionella pneumophila]
          Length = 106

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/94 (50%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
            + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ 
Sbjct: 1   SIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQP 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQ 136
           +S R   ++GQGN+GS D     AA RYTE RL 
Sbjct: 61  FSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLS 94


>gi|313192242|emb|CBY05929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 79/102 (77%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ Q
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNKQ 102


>gi|164604813|gb|ABY61967.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDFAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL 
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|295315163|gb|ADF97669.1| gyrase subunit A [Campylobacter coli]
 gi|295315165|gb|ADF97670.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I+GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                +  I  + I+D +    + ++++    R+IP + DGLKP  R++L+G ++  ++ 
Sbjct: 624 PGTHLDPEINEIPISDFINKELILFSMS-DNIRSIPSVLDGLKPGQRKVLYGCIKKKLKS 682

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
             K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 683 EIKVAQLAGYVSENTGYHH--GEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGK 740

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             +A RY    L +    + + L     ++  + + + +   
Sbjct: 741 DFSAARYIFTELNEITRKIFNPLDDPLYNYVQDDEQTVEPEW 782


>gi|70939063|ref|XP_740124.1| DNA GyrAse a-subunit [Plasmodium chabaudi chabaudi]
 gi|56517618|emb|CAH87702.1| DNA GyrAse a-subunit, putative [Plasmodium chabaudi chabaudi]
          Length = 516

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 158/357 (44%), Gaps = 56/357 (15%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATG 244
           + TNIP+HNL +V++  ++ + N  I  D L  II+GPDF TG +I+ +   ++N Y TG
Sbjct: 1   ILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTG 60

Query: 245 RGSIVIRGVSHIEKTSGDR----------------------EQIVVTEIPYQVNKAAMLE 282
           +GSI+IR     E    ++                      +++++  +P  V    ++E
Sbjct: 61  KGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIE 120

Query: 283 KIAELVREKRIV---DIADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSL 336
            I  ++ EK+      ++ +RDES++   R+V+EL++ +  + I N    L++YT ++  
Sbjct: 121 NIVTVLNEKKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTPMEIN 180

Query: 337 FSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
           +  N V +       +F+L   L+ +   R + + +  +   N  +   +++        
Sbjct: 181 YHCNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKDLNIIDLYLTIQK 240

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            + +++  I  + N E  +  L                               L++ Q +
Sbjct: 241 KILDIISFIHKNQNIEQIQNYLKSN--------------------------FKLNDDQIK 274

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            IL +++ +L  +   D   +  ++  +I+    I+ +   +  II  EL+ +K++ 
Sbjct: 275 YILSMKIQKLVNIKNIDFDIQKKNIIKKIQSNQYIIDNVQEIKQIIIDELIQIKNKY 331


>gi|290578671|gb|ADD51232.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578673|gb|ADD51233.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578675|gb|ADD51234.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578677|gb|ADD51235.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578679|gb|ADD51236.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/119 (52%), Positives = 93/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 75/162 (46%), Gaps = 7/162 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                +  I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  ++ 
Sbjct: 624 PGTHLDPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKLKS 682

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
             K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G+FGS    G 
Sbjct: 683 EIKVAQLAGYVSENTGYHH--GEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGK 740

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             +A RY    L +    + + L     ++  + + + +   
Sbjct: 741 DFSAARYIFTELNEITRKIFNPLDDPLYNYVQDDEQTVEPEW 782


>gi|313192286|emb|CBY05951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/102 (59%), Positives = 78/102 (76%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
              ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 5   YASRIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 64

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           S+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 65  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 106


>gi|313192252|emb|CBY05934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 77/101 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGEYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+   
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNMIF 104


>gi|11761974|gb|AAG40270.1|AF303649_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERY 130
            K AR  G+V+GKYHPH ++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RY
Sbjct: 1   KKSARTVGDVLGKYHPHCDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           TE R  K A  LL  LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 61  TESRGSKYAELLLSQLGQGTVDWVPNFDGTLQEPKMLPARMPNILL 106


>gi|313192250|emb|CBY05933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/98 (62%), Positives = 76/98 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 101


>gi|161339335|gb|ABX64408.1| gyrase [Streptococcus suis]
 gi|164604811|gb|ABY61966.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL 
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|161598227|gb|ABX74934.1| gyrase subunit A [Ureaplasma urealyticum]
          Length = 99

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 73/99 (73%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD 
Sbjct: 1   MTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            AA RYTE RL K ++ LL  + K+TVDF PNYD S QE
Sbjct: 61  AAAMRYTEARLSKISYELLKYIDKETVDFVPNYDASEQE 99


>gi|259089989|gb|ACV91835.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 98

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/98 (59%), Positives = 76/98 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  +
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 98


>gi|12642570|gb|AAK00288.1|AF302140_1 GyrA [Stenotrophomonas maltophilia]
          Length = 97

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M ++    NK Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++G
Sbjct: 1   RRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           QGNFGS+DGD  AA RYTE R+ + AH L+ D+ K+T
Sbjct: 61  QGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKET 97


>gi|313192256|emb|CBY05936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/100 (60%), Positives = 77/100 (77%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 3   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           GD  AA RYTE RL K AH L+ DL K+TVDF  NYDG  
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGKN 102


>gi|313192276|emb|CBY05946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/100 (60%), Positives = 76/100 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++WNK Y K AR+ G+V G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 8   RILGMDWNKAYKKSARVVGDVFGEYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 67

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 68  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 107


>gi|254168976|ref|ZP_04875815.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
 gi|197622082|gb|EDY34658.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
          Length = 153

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 58/210 (27%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +      DI L TK G+ +RF    +RV   R + GV GI L  G               
Sbjct: 2   KITHGGEDIFLFTKYGKAIRFSEDDVRVMG-RTARGVIGIKLQDG--------------- 45

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                  E     ++ +  ++  V   G
Sbjct: 46  --------------------------------------DEVISSAVESEGPYVFAVLSSG 67

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT   ++R   R G G+R   +        +V      +ND+ +L++  G  IR+ +
Sbjct: 68  YGKRTPIGEYRRIRRGGMGVRNISI----RNATVVKSLLTTENDEALLLTKNGMSIRIKL 123

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++ +  R  +GV +      + VV+  ++
Sbjct: 124 RDVSVMGRNARGVKLIKLDDGDEVVNAAKL 153



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 585 TH--TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           TH    +  F+  G   +     + +    ARG  +I I   +  E I++ +        
Sbjct: 4   THGGEDIFLFTKYGKAIRFSEDDVRVMGRTARG--VIGIKLQDGDEVISSAV-------E 54

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTK 701
               YV      G  +R  + ++ +I R G     +      ++     T+ ++ LL TK
Sbjct: 55  SEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEALLLTK 114

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
            G  +R  +  + V   RN+ GV+ I L  GD+V++ A
Sbjct: 115 NGMSIRIKLRDVSVMG-RNARGVKLIKLDDGDEVVNAA 151



 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +   +  + I L +  G  IR   +++R+  R  +GV+       + V+S     E
Sbjct: 1   MKITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDGDEVISSAVESE 56



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 15/140 (10%)

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
               R++G   + ++ +K +      +  VE                V  V   GY KR 
Sbjct: 24  EDDVRVMGRTARGVIGIKLQDGDEVISSAVESEG-----------PYVFAVLSSGYGKRT 72

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  YR  RRGG G   + +R+   V  L         L  +  G   + K+  + +   
Sbjct: 73  PIGEYRRIRRGGMGVRNISIRNATVVKSLLTTEN-DEALLLTKNGMSIRIKLRDVSVMGR 131

Query: 612 QARGKALINILSLNQGERIT 631
            ARG   + ++ L+ G+ + 
Sbjct: 132 NARG---VKLIKLDDGDEVV 148



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +   TK+G   R    D   + R   G I +KL   DE++S    ++   +      G  
Sbjct: 10  IFLFTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDGDEVISSAVESEGPYVFAVLSSGYG 69

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            R PI   R    R  +GVR IS+     V S+    + +A
Sbjct: 70  KRTPIGEYR-RIRRGGMGVRNISIRNATVVKSLLTTENDEA 109



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++    + I   ++ G   R S  D R+  R+ +G+    +   +E   +++    ++  
Sbjct: 2   KITHGGEDIFLFTKYGKAIRFSEDDVRVMGRTARGVIGIKLQDGDE---VISSAVESEGP 58

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  V   G   R P+ E R   R   GV   S      V S+      E 
Sbjct: 59  YVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEA 109


>gi|7243957|gb|AAB46847.2| topoisomerase II subunit A [Coxiella burnetii]
          Length = 106

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
            + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ 
Sbjct: 14  HIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQP 73

Query: 104 WSLRLLLIEGQGNFGSVDGDPP-AAERYTECRL 135
           +S R   ++GQGN+GS D     AA RYTE RL
Sbjct: 74  FSFRYPFVDGQGNWGSADDPKSFAAMRYTEARL 106


>gi|255742426|gb|ACU32467.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|238652843|emb|CAR63881.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 78/101 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+AA+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDAAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           VDGD PA+ RYTE ++ K +  LL D+ K+TVDF+PN+D S
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|218507099|ref|ZP_03504977.1| DNA gyrase subunit A [Rhizobium etli Brasil 5]
          Length = 97

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 67/97 (69%), Positives = 83/97 (85%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGR
Sbjct: 1   MATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           GS+++RGV+ IE   GDREQI++TEIPYQVNKA M+E
Sbjct: 61  GSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 97


>gi|313192274|emb|CBY05945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/107 (57%), Positives = 79/107 (73%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           R I     ++G +WNK Y K AR+ G+V+GKY+PHG++A+Y  + RMAQ +SLR +L++G
Sbjct: 1   RGIRLYASRIGHDWNKAYKKSARVVGDVIGKYNPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           QGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 107


>gi|253762209|gb|ACT35556.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 97

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 73/97 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDYAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|1053073|gb|AAA80683.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
          Length = 71

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM
Sbjct: 2   ALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRM 61

Query: 101 AQDWSLRLLL 110
            QD+S R  L
Sbjct: 62  VQDFSSRYPL 71


>gi|83596418|gb|ABC25548.1| GyrA [Streptococcus pneumoniae]
          Length = 97

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 77/97 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A
Sbjct: 1   DVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIA 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
             +L D+ K+TVDF  NYD + +EP+VL AR+PN+LV
Sbjct: 61  LEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLV 97


>gi|290578701|gb|ADD51247.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 62/119 (52%), Positives = 92/119 (77%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            E+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  AELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|238652839|emb|CAR63879.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 77/101 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           VDGD PA+ RYTE ++ K +  LL D+ K+TVDF+PN+D S
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|558547|emb|CAA57655.1| DNA Gyrase A subunit [Acinetobacter baumannii]
 gi|197725597|gb|ACH73007.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 95

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/95 (63%), Positives = 74/95 (77%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 1   VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            AH LL DL KDTVD+  NYDGS + P VL  R P
Sbjct: 61  LAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVP 95


>gi|321268206|gb|ADW78911.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|197209604|gb|ACH48044.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 93

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/91 (61%), Positives = 70/91 (76%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA  
Sbjct: 1   PYKKAARVVGDVTGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMP 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           YTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  YTEIRLAKIAHGLMADLEKETVDFVDNYDGT 91


>gi|284027745|gb|ADB66699.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 73/104 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G +W K   K AR+ G+V+G YHPHG++A YD + RMAQ +SLR +L++GQG 
Sbjct: 1   LYAMNVLGHDWIKAKKKAARVVGDVIGIYHPHGDSAEYDTIVRMAQPFSLRHMLVDGQGI 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           FGS+DGD  AA R+TE RL   AH L  DL  +TVDF  NYDG+
Sbjct: 61  FGSIDGDCAAAMRHTEIRLALIAHRLKADLEGETVDFVDNYDGT 104


>gi|321268228|gb|ADW78922.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268230|gb|ADW78923.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K 
Sbjct: 1   GEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 60

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           +  ++ D+ K+TVDF+ N+D +  EP V+  + P +L+N
Sbjct: 61  SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLIN 99


>gi|312183505|gb|ADQ42322.1| DNA gyrase subunit A [Actinobaculum schaalii]
          Length = 105

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 70/104 (67%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   +  + K A+I G+VMG YHPHG+AAIYD + R+AQ WS+R  L+ GQGNFG+    
Sbjct: 1   GDRPDSSFSKSAKIVGDVMGHYHPHGDAAIYDTMVRLAQPWSMRYPLVSGQGNFGTSGDL 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             AA RYTE R+   A  ++ D+ ++TVDF PNYDGS  EP +L
Sbjct: 61  GAAAPRYTEARMAPLALEMVRDIKENTVDFEPNYDGSLMEPTIL 104


>gi|110456308|gb|ABG74699.1| GyrA [Ureaplasma urealyticum]
          Length = 101

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 67/89 (75%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+  +Y  + RMAQD+S+R LL++G GNFGS+DGD  AA RYTE RL K ++
Sbjct: 13  VIGKYHPHGDQVVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARLSKISY 72

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
            LL  + K+TVDF PNYD S QEP VL +
Sbjct: 73  ELLKYIDKETVDFVPNYDASEQEPSVLPS 101


>gi|17932929|emb|CAC84126.1| ParC topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 91

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/91 (56%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +
Sbjct: 1   IGDGLKPVQRRIIYSMSELGLNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPP-AAERYTECR 134
           S R  LIEGQGNFGS D     AA RYTE R
Sbjct: 61  SYRYPLIEGQGNFGSSDDPKSFAAMRYTESR 91


>gi|238652841|emb|CAR63880.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 76/101 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RM QD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMEQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|799017|emb|CAA60388.1| DNA Gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 95

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 74/95 (77%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 1   DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+
Sbjct: 61  HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNL 95


>gi|238652883|emb|CAX46373.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 57/101 (56%), Positives = 76/101 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           VDGD PA  RYTE ++ K +  LL D+ K+TVDF+PN+D S
Sbjct: 61  VDGDSPAVMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|321268214|gb|ADW78915.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268216|gb|ADW78916.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268218|gb|ADW78917.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268222|gb|ADW78919.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268226|gb|ADW78921.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|238652845|emb|CAR63882.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 59/101 (58%), Positives = 77/101 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHGN A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|255741569|gb|ACU32445.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 97

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|321268212|gb|ADW78914.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|295315229|gb|ADF97702.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315233|gb|ADF97704.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315235|gb|ADF97705.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315237|gb|ADF97706.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315239|gb|ADF97707.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315241|gb|ADF97708.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315243|gb|ADF97709.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315245|gb|ADF97710.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315247|gb|ADF97711.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315249|gb|ADF97712.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315253|gb|ADF97714.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315255|gb|ADF97715.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315257|gb|ADF97716.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315259|gb|ADF97717.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315261|gb|ADF97718.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315263|gb|ADF97719.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315267|gb|ADF97721.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315271|gb|ADF97723.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315273|gb|ADF97724.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315277|gb|ADF97726.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315279|gb|ADF97727.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315281|gb|ADF97728.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315283|gb|ADF97729.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315285|gb|ADF97730.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315287|gb|ADF97731.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315289|gb|ADF97732.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315291|gb|ADF97733.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315293|gb|ADF97734.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315297|gb|ADF97736.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315299|gb|ADF97737.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315301|gb|ADF97738.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315303|gb|ADF97739.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315305|gb|ADF97740.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315307|gb|ADF97741.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315309|gb|ADF97742.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|255742424|gb|ACU32466.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/96 (60%), Positives = 74/96 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|321268224|gb|ADW78920.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|238652881|emb|CAX46372.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/101 (57%), Positives = 77/101 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDES 101


>gi|148645150|gb|ABR01099.1| GyrA [uncultured Geobacter sp.]
          Length = 131

 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 54/185 (29%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  D++++V     + D+LL T  G+ +RF  S +R  + R S GVRG+SL   
Sbjct: 1   IIAVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVS-RVSRGVRGMSLDAD 59

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI M I+                                                   
Sbjct: 60  DVVIGMEIIND------------------------------------------------- 70

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             +    + TV+E GFGKRT   ++R  +R GKGI     ++ N  G +V +  VND + 
Sbjct: 71  --MSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERN--GCVVDIMQVNDEND 126

Query: 853 IILVS 857
           ++L++
Sbjct: 127 LMLIT 131



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I A ++ + ++   L+AV   +    ++L +  G  IR   +++R  SR ++GV   S  
Sbjct: 1   IIAVNLDEGDK---LIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLD 57

Query: 887 KDERVVSVERIRE 899
            D+ V+ +E I +
Sbjct: 58  ADDVVIGMEIIND 70



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-- 849
            L   +Q +L  +  G   R    D R  +R  +G+R   +   +    ++ +  +ND  
Sbjct: 16  ALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLDADD---VVIGMEIINDMS 72

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
              +  V++ G   R  ++E R  SR  KG++   T + +  VV + ++ + 
Sbjct: 73  GSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVVDIMQVNDE 124



 Score = 42.6 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 10/138 (7%)

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
              V + + D +  + +      VL  +S G   + K   +   S  +RG   +  +SL+
Sbjct: 1   IIAVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRG---VRGMSLD 57

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE-- 683
             + +  +    +     +   +   T++G  +R +LS++   +R GK  + + + +   
Sbjct: 58  ADDVVIGMEIIND----MSGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNG 113

Query: 684 -ILSVETCTQENDILLTT 700
            ++ +     END++L T
Sbjct: 114 CVVDIMQVNDENDLMLIT 131


>gi|313192254|emb|CBY05935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 77/99 (77%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GD  AA RYTE RL K AH L+ DL K+TVDF   YDG 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVEQYDGK 100


>gi|60686900|gb|AAX35540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 97

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQG
Sbjct: 2   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQG 61

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 62  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 97


>gi|215536135|gb|ACJ68515.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 71/95 (74%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKI 95


>gi|295315227|gb|ADF97701.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315231|gb|ADF97703.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315251|gb|ADF97713.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315265|gb|ADF97720.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315269|gb|ADF97722.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315275|gb|ADF97725.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315295|gb|ADF97735.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|321268210|gb|ADW78913.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 98

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++
Sbjct: 2   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 61

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            D+ K+TVDF+ N+D +  EP V+  + P +L+NGG
Sbjct: 62  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGG 97


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + +  I  + I D +    + +++     R++P + DGLKP  R++++G+ +     
Sbjct: 614 PGTQLDPEIEEIPIADFINKELILFSM-ADNIRSLPCVLDGLKPAQRKVIYGLQKRAGNR 672

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGD 123
             K    A         +H  G+ ++   +  MAQD+  +  + L+E +GNFGS  + G 
Sbjct: 673 EGKVNDLAGYISSNTAYHH--GDQSLVMTIVSMAQDFVGANNINLLEPRGNFGSRFMGGK 730

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             +A RY    L +    + + L      +    + + +   
Sbjct: 731 DASAARYIHTCLSEITKSVYNPLDNSLYKYVQEDESTVEPQW 772


>gi|46191315|ref|ZP_00206761.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Bifidobacterium longum
          DJO10A]
          Length = 115

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 5/93 (5%)

Query: 1  MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
          M  H   S +  +     + I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1  MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
          I++ M +M +  ++ Y+K AR+ GEVMGK HP 
Sbjct: 61 IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPQ 93


>gi|321268208|gb|ADW78912.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 95

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 75/95 (78%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++
Sbjct: 1   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 60

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 95


>gi|156394521|ref|XP_001636874.1| predicted protein [Nematostella vectensis]
 gi|156223981|gb|EDO44811.1| predicted protein [Nematostella vectensis]
          Length = 394

 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 130/383 (33%), Gaps = 40/383 (10%)

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            L   +  L     +  + F  N D    EP   C   P +LVNG  GI  G +T +P +
Sbjct: 1   MLSTVSKMLFPPSDEPNLKFL-NEDNQRIEPEWYCPIIPTILVNGAEGIGTGYSTKVPNY 59

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +   + +    +++  +               P     +G     +              
Sbjct: 60  DPRAIAENIRKMMNGEE----------PEEMLPWYKNFIGTITKVD-------DTKYSVT 102

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRV 310
            +IE    D   + +TE+P      +  E + E +    +K    I D ++       R 
Sbjct: 103 GNIEVI--DDTTLEITELPIGTWTQSYKESVLEPMLHGTDKVPPCITDYKEYHTETRVRF 160

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---GYKPERFTLIGILKAFVAFREE 367
           VI +      +     L++   L++  + + + L    G   +  T   ILK F   R E
Sbjct: 161 VITMAENKMREAEQVGLHKKFKLEATINTSNMVLFDAMGCLKKYDTTREILKEFFTLRME 220

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             + R  Y+       +  L   A  +    E   +I   P  +     L+QR + +  +
Sbjct: 221 RYIMRKAYMEGMLTAESGKLNSQARFILEKIEGTIVIENKPKRDLI-TMLVQRGYPSDPV 279

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRA----------ILELRLARLTGLGRDDIRNEL 477
           K   D   D++  +       +S V + A          +L + +  L+   +D++  + 
Sbjct: 280 KAWKD-SQDTTLGVDDSDDDTMSTVSSTASGAGGPDFNYLLNMSMWSLSQEKKDELLKQR 338

Query: 478 NSLGIEIKECLDILSSRSRLLGI 500
           +    E+++      S   L   
Sbjct: 339 DQKAAELEDLRK--KSPKDLWNE 359


>gi|62125793|gb|AAX63810.1| topoisomerase IV subunit A [Haemophilus quentini]
          Length = 106

 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   +KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D   
Sbjct: 1   LNATEKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 P-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
             AA RYTE RL K +  LL +L + TVD++PN+DG+  EP  L A
Sbjct: 61  SFAAMRYTESRLSKISEILLSELEQGTVDYQPNFDGTLAEPQYLPA 106


>gi|202073599|gb|ACH96270.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|202073601|gb|ACH96271.1| DNA gyrase subunit A [Waddlia chondrophila]
          Length = 82

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 57/82 (69%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KP  RRIL+ M  + +    K+ KCA+ISG+  G +HPHG   IY  L RMAQ W +R  
Sbjct: 1   KPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYR 60

Query: 110 LIEGQGNFGSVDGDPPAAERYT 131
           L++GQGNFGSVDGDPPAA RYT
Sbjct: 61  LVDGQGNFGSVDGDPPAAMRYT 82


>gi|215536133|gb|ACJ68514.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 94

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 71/94 (75%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDYAVYFTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           K AH L+ DL K+TVDF  NYDG+ + P V+  +
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 94


>gi|313192258|emb|CBY05937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 76/99 (76%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGEYHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GD  AA RYTE RL K AH L+ DL K+TVDF   YDG 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKYDGK 100


>gi|21326979|gb|AAM48110.1|AF500123_1 gyrase [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 96

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|124108693|gb|ABM90923.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 95

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 95


>gi|124108707|gb|ABM90930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|124108799|gb|ABM90976.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 74

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/74 (62%), Positives = 61/74 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGD 123
           L++GQGNFGS+DGD
Sbjct: 61  LVDGQGNFGSIDGD 74


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + +  +  + I++ +    + ++++    R+IP + DGLKP  R++LFG  +  ++ 
Sbjct: 621 PGNQLDPALNEIPISEFINKELILFSMS-DNIRSIPSVLDGLKPGQRKVLFGCFKRNLKS 679

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
             K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G FGS    G 
Sbjct: 680 EIKVAQLAAYVSENTGYHH--GEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATGGK 737

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             AA RY    L      + + L      +  + + + +   
Sbjct: 738 DAAAARYIFTELNDITKAIFNPLDNPIYTYVQDDEQTVEPQW 779


>gi|60651668|gb|AAX32845.1| GyrA [Riemerella anatipestifer]
          Length = 80

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/80 (66%), Positives = 66/80 (82%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +GV  NKKY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++G
Sbjct: 1   RRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDG 60

Query: 114 QGNFGSVDGDPPAAERYTEC 133
           QGNFGS+DGDPPAA RYTE 
Sbjct: 61  QGNFGSMDGDPPAAMRYTEA 80


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            +       +  +T + I+D +    + +++     R+IP + DGLKP  R++++   + 
Sbjct: 615 KLYEPGTVLDPKLTEIPISDFINKELILFSL-ADNIRSIPSVLDGLKPGQRKVIYACFKR 673

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV- 120
            ++   K  +      E  G +H  G  ++Y  +  +AQD+  S  + L++  G FG+  
Sbjct: 674 NLKSEIKVAQLGGYVSEHTGYHH--GEPSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRA 731

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             G   AA RY    L K    + + L    + +  + + + +   
Sbjct: 732 TGGKDSAAPRYIFTELNKITRKIFNSLDDPLLTYIQDDEQTVEPEW 777


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + +  +  + I++ +    + ++++    R+IP + DGLKP  R++LFG  +  ++ 
Sbjct: 621 PGNQLDPELNEIPISEFINKELILFSMS-DNIRSIPSVLDGLKPGQRKVLFGCFKRNLKS 679

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
             K  + A    E  G +H  G  ++   +  +AQ++  S  + +++  G FGS    G 
Sbjct: 680 EIKVAQLAAYVSENTGYHH--GEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATGGK 737

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
             AA RY    L      + + L      +  + + + +   
Sbjct: 738 DAAAARYIFTELNDITKAIFNPLDNPIYSYVQDDEQTVEPQW 779


>gi|93278246|gb|ABF06588.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGSVDGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|313192244|emb|CBY05930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 75/102 (73%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           DGD  AA RYTE RL K AH L+ DL K+TV     +DG+  
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVVSWITFDGNKW 102


>gi|325068317|ref|ZP_08126990.1| DNA topoisomerase [Actinomyces oris K20]
          Length = 171

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 26/154 (16%)

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ             
Sbjct: 1   TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ------------- 47

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q   ILEL+L RLT     ++  E + L  EI+    IL+
Sbjct: 48  -------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILA 94

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
               L  ++ +EL +V ++  TPRRT ++E   +
Sbjct: 95  DDVLLRRVVSRELAAVAEQFGTPRRTVLLEASGE 128


>gi|124108705|gb|ABM90929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|94467525|dbj|BAE93904.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           FGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|90017820|gb|ABD83866.1| topoisomerase IV subunit A [Haemophilus sp. COAD036]
 gi|90017822|gb|ABD83867.1| topoisomerase IV subunit A [Haemophilus sp. COAD165]
          Length = 99

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           E RL K +  LL +LG+ TVD++PN+DG+  EP  L AR
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPAR 99


>gi|238759144|ref|ZP_04620313.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
 gi|238702692|gb|EEP95240.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
          Length = 265

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 20/225 (8%)

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           M + D +  E + + +S +G+V        R+ +      SG+  +  D         ++
Sbjct: 1   MSEHDIVPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSN 52

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+F  S G  Y      LP  S + +G+ L   L+   G  I  ++  P+D+      
Sbjct: 53  QPVVFIDSTGRSYALDPLTLP--SARGQGEPLTGKLTPPPGAAIEQVLMAPDDQK----- 105

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQC 705
            ++ A+  G       +D +  NR+GK  + L    + L        ++ +L  T  G+ 
Sbjct: 106 -LLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRM 164

Query: 706 VRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
           + FP++ +   +      +  I     A G+  ++   VL     
Sbjct: 165 LMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTS 209



 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +Q +L  S+ G+G   +  D    NR+GK +     +        +       +D 
Sbjct: 99  MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIH----GPDDM 154

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 155 LLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 186


>gi|313192270|emb|CBY05943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 74/97 (76%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GD  AA RYTE RL K AH L+ DL K+TVDF   YD
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFLGYYD 98


>gi|313192238|emb|CBY05927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|313192246|emb|CBY05931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 96


>gi|93278234|gb|ABF06582.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278238|gb|ABF06584.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 72/98 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|21326981|gb|AAM48111.1|AF500124_1 gyrase [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 97

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/96 (60%), Positives = 73/96 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|148645152|gb|ABR01100.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 53/185 (28%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  D++++V       D+LL +K G+C+RF    +R    R S GVRG++L   
Sbjct: 1   IIAVNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTVG-RVSRGVRGMTLEDD 59

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI M I+     D                                             
Sbjct: 60  DVVIGMTILNENFTDS-------------------------------------------- 75

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  V+D + 
Sbjct: 76  ------TIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERN--GCVVDIKQVSDEND 127

Query: 853 IILVS 857
           ++L++
Sbjct: 128 LMLIT 132



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I A ++ + ++   L+ V   +    ++L S  G  IR    ++R   R ++GV   +  
Sbjct: 1   IIAVNLDEGDK---LITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLE 57

Query: 887 KDERVVSVERIRES 900
            D+ V+ +  + E+
Sbjct: 58  DDDVVIGMTILNEN 71



 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 1/110 (0%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            L    Q +L  S+ G   R    D R   R  +G+R   +   + +  +  +     + 
Sbjct: 16  ALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLEDDDVVIGMTILNENFTDS 75

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            I  V++ G   R  ++E R  SR  KGV+   T + +  VV ++++ + 
Sbjct: 76  TIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVVDIKQVSDE 125


>gi|124108791|gb|ABM90972.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 59/72 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVD 121
           L++GQGNFGS+D
Sbjct: 61  LVDGQGNFGSID 72


>gi|19549339|gb|AAL89786.2|AF487421_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 94

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 72/93 (77%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA
Sbjct: 2   EQAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            RYTE RL K AH L+ DL K+TVDF   YDG+
Sbjct: 62  MRYTEIRLAKIAHELMADLEKETVDFVDTYDGN 94


>gi|124108755|gb|ABM90954.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|93278236|gb|ABF06583.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 72/98 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQG
Sbjct: 1   ILYAMHDLSINSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|313192262|emb|CBY05939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/99 (59%), Positives = 75/99 (75%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GD  AA RYTE RL K AH L+ DL K+TVDF  N D  
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNNDDK 100


>gi|4768994|gb|AAD29710.1|AF140497_1 hypothetical protein [Oryza sativa]
          Length = 142

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +LSL+ GERIT+I+P  E      + Y+V  T +G +++  L+ F  I  SG I+++L 
Sbjct: 1   QLLSLSDGERITSIVPVNE---FGEDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLA 57

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+  V  C  ++ + L ++ G  +    + +R    R + GV  + L +GD++ SM 
Sbjct: 58  PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALG-RKTRGVLAMKLKEGDKMASMD 116

Query: 740 IVLHADADYDERICYMKHMSAQR 762
           I+     +  E    ++ +S   
Sbjct: 117 IIPATSHNMPETYSRVRDLSPHG 139



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           ++Q+++ ++  G+ K+     F     SG  I +  ++  +E   L  V    D+D + L
Sbjct: 22  EDQYLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDE---LKWVRRCGDDDLVAL 76

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            S  G +I    N++R   R T+GV+     + +++ S++ I  +
Sbjct: 77  ASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPAT 121


>gi|3152709|gb|AAC17123.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 75/107 (70%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E 
Sbjct: 1   RRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEM 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  HGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 107


>gi|93278232|gb|ABF06581.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278240|gb|ABF06585.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQG
Sbjct: 1   ILYAMHDLSINSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|284027754|gb|ADB66702.1| ParC [Salmonella enterica subsp. enterica]
          Length = 100

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/93 (46%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RR+++ M ++G+    K+ + AR  G+V+GKYHPHG++A Y+A+  +AQ +
Sbjct: 6   IGDGLKPVQRRMVYAMSELGLTATFKFKRSARTVGDVLGKYHPHGDSAWYEAMVLLAQPF 65

Query: 105 SLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQ 136
           S R  L++GQG +G++D     AA RYTE RL 
Sbjct: 66  SYRGPLVDGQGFWGALDDPKSFAAMRYTEYRLS 98


>gi|93278230|gb|ABF06580.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278242|gb|ABF06586.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|4566382|gb|AAD23325.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
 gi|4566384|gb|AAD23326.1| DNA gyrase subunit A [Streptococcus oralis]
 gi|4566390|gb|AAD23329.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566392|gb|AAD23330.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566394|gb|AAD23331.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566398|gb|AAD23333.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566400|gb|AAD23334.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566402|gb|AAD23335.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 75/96 (78%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|93278248|gb|ABF06589.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSMRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGSVDGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|48429402|gb|AAT42469.1| ParC [Escherichia coli B]
          Length = 166

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 39/198 (19%)

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL +A  N+DEV+ IIR    P+ A   LM R                   
Sbjct: 1   VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR------------------- 38

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  
Sbjct: 39  -------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNN 91

Query: 500 IIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           ++K+EL +        RR+ +   E    M + D +  E + + +S +G+V        R
Sbjct: 92  LLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------R 143

Query: 558 AQRRGGKGRSGVVMRDED 575
           + +       G+  +  D
Sbjct: 144 SAKGHDIDAPGLNYKAGD 161


>gi|124108803|gb|ABM90978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 59/72 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVD 121
           L++GQGNFGS+D
Sbjct: 61  LVDGQGNFGSID 72


>gi|313192280|emb|CBY05948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 73/97 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
              ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 5   YAWRIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFG 64

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           S+DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 65  SIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 101


>gi|94467527|dbj|BAE93905.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + R+AQ +S+R +L++GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYKTIVRLAQPFSMRYMLVDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           FGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|4566388|gb|AAD23328.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|124108725|gb|ABM90939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|317498960|ref|ZP_07957243.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893793|gb|EFV15992.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 194

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 8/175 (4%)

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           +NM+A+   +PE   L GI++    F  EV  R+ K LL+K  ++  +  GL  A   +D
Sbjct: 1   MNMLAIVDGRPETLDLKGIIENHTQFYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMID 60

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            ++ IIR S + +  +  L +      + K    +I+           +  ++ Q  AIL
Sbjct: 61  LIIEIIRGSKSQKEVKACLTKGDVGNINFKSSDSMIE--------ATKLSFTDKQASAIL 112

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
           +L+L RL GL    ++ E   +  +I+E  D+L++   L  +I++EL  +K  LD
Sbjct: 113 DLKLYRLIGLEILMLKEEYEEILAKIEEYEDVLNNEKSLKNVIRKELDKIKKNLD 167


>gi|3152656|gb|AAC17106.1| DNA-gyrase subunit A [Citrobacter freundii]
          Length = 91

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 69/91 (75%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH 
Sbjct: 1   IGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHE 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           L+ DL K+TVDF  NYDG+ Q P V+  + P
Sbjct: 61  LMADLEKETVDFVDNYDGTEQIPDVMPTKIP 91


>gi|313192272|emb|CBY05944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GD  AA RYT  RL K AH L+ DL K+TV F   Y+  
Sbjct: 62  GDSAAAMRYTVIRLAKIAHQLMADLEKETVYFLDKYEDK 100


>gi|325512972|gb|ADZ23659.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 92

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQ +SLR      QGNF S+DGD  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 1   DTIVRMAQPFSLRYCW-RWQGNFSSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 59

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 60  DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 92


>gi|19908359|gb|AAL99230.1| gyrase [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 92

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 71/90 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 62  AMRYTEIRLAKIAHELMADLEKETVDFVDN 91


>gi|4566396|gb|AAD23332.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 74/96 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  A +
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAADQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVANYDANEREP 96


>gi|124108789|gb|ABM90971.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 70

 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGS 119
           L++GQGNFGS
Sbjct: 61  LVDGQGNFGS 70


>gi|29165279|gb|AAO65580.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Java]
          Length = 95

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 72/95 (75%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|227553417|ref|ZP_03983466.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227177450|gb|EEI58422.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 261

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 116/315 (36%), Gaps = 64/315 (20%)

Query: 598 VYKEKVWRLPIGSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +    V  LP    +  G+ +   IL+L   E I  + P+ E          VF TK G 
Sbjct: 1   MIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAVYPYKEL---SPTKTFVFITKAGM 57

Query: 657 VRRNKLSDFIQIN---RSGKIAMKLD-SRDEILSVETCTQEN--DILLTTKLGQCVRFPI 710
           +++ K++DF             MKL   +DEI +V     ++  D+ L +  G  +R+P+
Sbjct: 58  IKQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPL 117

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             + V     + GV+ ++L + D V++  +V                             
Sbjct: 118 YEVPVVGS-KAAGVKSMNLKEDDYVVNGLLVHSEGDTP---------------------- 154

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        I+ V+++G  KR  + +     R+ +G+   
Sbjct: 155 -----------------------------IVIVTQRGGVKRMLAQELTQLGRAKRGL--M 183

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            + ++ +    V     + +  +++ + KGT   +      I+ R + G  +    KD +
Sbjct: 184 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQ 243

Query: 891 VVSVERIRESEIVDE 905
           V+ V  +  + I +E
Sbjct: 244 VMEVHEMHSAVIEEE 258


>gi|29165275|gb|AAO65578.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Brandenburg]
          Length = 95

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 73/95 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|313192248|emb|CBY05932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|124108763|gb|ABM90958.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108765|gb|ABM90959.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|4566386|gb|AAD23327.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|402872|gb|AAA21849.1| DNA gyrase subunit A [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 195

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 56/216 (25%)

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +++ TK GQ V FPIS  R    R + GV+GI+L                A+ DE I 
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAMG-RGTHGVKGITL----------------AEGDEVIS 43

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +   +  +                                     ILT++EKG+GKR+ 
Sbjct: 44  LLWLKAGNK-------------------------------------ILTITEKGYGKRSE 66

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +R++ R  KG+R  +V+  ++IGA V V  V D+  +I+ S  G +IR+   +IR+ 
Sbjct: 67  PGSYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAADIRLT 124

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            R  +GV   +    + V     +   E +++  + 
Sbjct: 125 GRNAQGVKAITLRDGDVVKDATALPSVEDIEQDSAD 160



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 84/206 (40%), Gaps = 14/206 (6%)

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             ++  +  G      +           G   +  ++L +G+ + +++            
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAMGR---GTHGVKGITLAEGDEVISLLWLKAGNK----- 52

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLG 703
            ++  T+ G  +R++   +    R  K    L+  D+I   + VE+   + D+++T+K G
Sbjct: 53  -ILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDG 111

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +R   + IR+  GRN+ GV+ I+L  GD V+  A  L +  D ++     K    + +
Sbjct: 112 QVIRIKAADIRL-TGRNAQGVKAITLRDGD-VVKDATALPSVEDIEQDSADAKETFDKVK 169

Query: 764 LISGDTEEITSLKNDSSVEGNISEER 789
            +  D + +     +    G    E 
Sbjct: 170 GVEVDDDSVVKDDAEKQEIGPTETEE 195



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 10/170 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D+++  +  G     P+S +RA  RG  G  G+ + + D V  L  +     +L  +  G
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAMGRGTHGVKGITLAEGDEVISLLWLKAGNKILTITEKG 60

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +  + +     +    ++G     + +LN  ++I   +     ES  ++  ++  +K G 
Sbjct: 61  YGKRSEPGSYRVTRRGSKG-----VRNLNVTDKIGAAVFV---ESVADDYDLIITSKDGQ 112

Query: 657 VRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           V R K +D     R+  G  A+ L   D +          DI   +   +
Sbjct: 113 VIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQDSADAK 162



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 1/136 (0%)

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +    ++     +   + ++T++  GY KR     YR  RRG KG   + + D+      
Sbjct: 35  LAEGDEVISLLWLKAGNKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVF 94

Query: 581 FIVSTHTSVLFFSSL-GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
                    L  +S  G V + K   + +    A+G   I +   +  +  T +    + 
Sbjct: 95  VESVADDYDLIITSKDGQVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDI 154

Query: 640 ESSWNNLYVVFATKHG 655
           E    +    F    G
Sbjct: 155 EQDSADAKETFDKVKG 170


>gi|124108743|gb|ABM90948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108735|gb|ABM90944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEKETVDFV 93


>gi|124108715|gb|ABM90934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108733|gb|ABM90943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|124108703|gb|ABM90928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|29165277|gb|AAO65579.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Reading]
          Length = 95

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 73/95 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|124108689|gb|ABM90921.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108697|gb|ABM90925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108699|gb|ABM90926.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108711|gb|ABM90932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|146743236|gb|ABQ42863.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 88

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/87 (54%), Positives = 62/87 (71%)

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           IY  L R+AQ W++R  L++GQGNFGS   D PAA RYTECR+   A  ++ D+ ++TVD
Sbjct: 1   IYATLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRMTPLAMEMVRDIRENTVD 60

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGG 179
           F PNYDG  QEP +L +R PN+L+NG 
Sbjct: 61  FSPNYDGKTQEPDILPSRVPNLLMNGS 87


>gi|124108747|gb|ABM90950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108753|gb|ABM90953.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108757|gb|ABM90955.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108761|gb|ABM90957.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 94


>gi|313192240|emb|CBY05928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 73/93 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|24020930|gb|AAN40860.1| ParC [Streptococcus salivarius]
          Length = 106

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 75/106 (70%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 106


>gi|124108721|gb|ABM90937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|94471631|gb|ABF21082.1| DNA gyrase subunit A [Spiroplasma culicicola]
          Length = 86

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 57/82 (69%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          SD      I  + I +E++  +L Y+++VI+ RA+PDLRDGLKPVHRRI++ M  + +  
Sbjct: 5  SDNLGLGKILEIDIKNEVEKDFLEYSMSVIVSRALPDLRDGLKPVHRRIIYAMNDLKITS 64

Query: 68 NKKYVKCARISGEVMGKYHPHG 89
          +  + K ARI GEV+GKYHPHG
Sbjct: 65 DTPHKKSARIVGEVIGKYHPHG 86


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  ++ +E  +  +  VS  D +    + ++I     R+IP   DG KP  R+ILF   +
Sbjct: 214 KTNVNVNESMDYSVRQVSYRDFVDKELILFSI-ADCERSIPSAIDGFKPGQRKILFSCFK 272

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLI--EGQGNFG 118
             +  + K V+ A    E    +H  G  ++   +  MAQD+  S  + L+  +GQ    
Sbjct: 273 RNLVNSIKVVQLAGYVSEHSAYHH--GEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTR 330

Query: 119 SVDGDPPAAERYTEC 133
              G   AA RY   
Sbjct: 331 LHGGKDHAAPRYIFT 345


>gi|221124382|ref|XP_002163411.1| PREDICTED: similar to phosphoserine aminotransferase [Hydra
           magnipapillata]
          Length = 495

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 55/209 (26%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 1   MGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDV 60

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    RN+ GVRG+ L +G  VI+M +                               +T
Sbjct: 61  RPMG-RNARGVRGMMLDEGQSVIAMLVAEDEQQSV-----------------------LT 96

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + +N      NI+E                +  G G +      + S R+GK        
Sbjct: 97  ATENGYGKRTNITEY---------------TRHGRGTKGMIA-IQQSERNGK-------- 132

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTL 862
                  +VA   V+  D+I+L++DKG L
Sbjct: 133 -------VVAATLVHAEDEIMLITDKGVL 154



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+T+  +F    ++G  I A D+ + +    L+     +    ++L SD G  +R  
Sbjct: 2   GTVKKTALDEFSNPRKAG--IIAVDLDEGD---FLIGAALTDGKHDVMLFSDGGKAVRFD 56

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            N++R   R  +GV      + + V+++  + E E      +TE
Sbjct: 57  ENDVRPMGRNARGVRGMMLDEGQSVIAM-LVAEDEQQSVLTATE 99



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G VK+  L  +   R+   G   V + + DF+    +      V+ FS  G   +    
Sbjct: 1   MGTVKKTALDEFSNPRKA--GIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDEN 58

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +      ARG   +  + L++G+ +  ++   EDE       V+ AT++G  +R  +++
Sbjct: 59  DVRPMGRNARG---VRGMMLDEGQSVIAML-VAEDEQQS----VLTATENGYGKRTNITE 110

Query: 665 FIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLG 703
           + +  R  K  + +       ++++      E++I+L T  G
Sbjct: 111 YTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKG 152



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  ++  S+ G   R    D R   R+ +G+R   + +    G  V    V ++
Sbjct: 34  AALTDGKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGMMLDE----GQSVIAMLVAED 89

Query: 851 DQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIV 903
           +Q  ++  ++ G   R  + E     R TKG++    ++ + +VV+   +   + +
Sbjct: 90  EQQSVLTATENGYGKRTNITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEI 145


>gi|124108691|gb|ABM90922.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108695|gb|ABM90924.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108719|gb|ABM90936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108731|gb|ABM90942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108723|gb|ABM90938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108767|gb|ABM90960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|124108739|gb|ABM90946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLKKETVDFV 93


>gi|124108701|gb|ABM90927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 69/89 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|22094462|gb|AAM91910.1|AF498910_1 gyrase A [Salmonella enterica subsp. enterica serovar Derby]
          Length = 101

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 3/102 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDT--VDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+   + + P YDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKERRWISWIP-YDG 101


>gi|124108793|gb|ABM90973.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSV 120
           L++GQGNFGS 
Sbjct: 61  LVDGQGNFGSR 71


>gi|90017824|gb|ABD83868.1| topoisomerase IV subunit A [Haemophilus sp. COAD591]
          Length = 99

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYT
Sbjct: 1   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           E RL K +  LL +LG+ TVD++ N+DG+  EP  L AR
Sbjct: 61  ESRLSKISEILLSELGQGTVDYQSNFDGTLAEPQYLPAR 99


>gi|19526749|gb|AAL89785.1|AF487420_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 92

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 69/89 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A RYTE RL K AH L+ DL K+TVDF  
Sbjct: 62  AMRYTEIRLAKIAHELMADLEKETVDFVD 90


>gi|124108727|gb|ABM90940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFR 154
           A RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|124108729|gb|ABM90941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVGGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|313192268|emb|CBY05942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/94 (59%), Positives = 72/94 (76%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVFGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           GD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLKKETVDFVD 95


>gi|124108745|gb|ABM90949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 2   GHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  SAAAMRYTEIRLAKIAHGLMADLKKETVDFV 92


>gi|313192260|emb|CBY05938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WN+ Y K AR+ G+V G+YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 3   RIGHDWNQAYKKSARVVGDVFGEYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSID 62

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GD  AA RYTE RL K AH L+ DL K+TVDF    D  
Sbjct: 63  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDKNDDK 101


>gi|284027752|gb|ADB66701.1| ParC [Salmonella enterica subsp. enterica]
          Length = 90

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + R +P + DGL PV RRI++ M  +GV    K+   AR  G+ +GK HPHG++A Y+ +
Sbjct: 7   MDRVLPSIGDGLGPVQRRIVYAMSALGVNATAKFKLSARTVGDGLGKNHPHGDSASYEDM 66

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVD 121
             MAQ +S R  L++GQGN+G+ D
Sbjct: 67  FLMAQPFSYRYPLVDGQGNWGAPD 90


>gi|124108709|gb|ABM90931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 69/89 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A RYTE RL K AH L+ DL K+TVDF  
Sbjct: 62  AMRYTEIRLAKIAHGLMADLEKETVDFVD 90


>gi|124108741|gb|ABM90947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 69/88 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFR 154
           A RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  AMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|98990340|gb|ABF60239.1| DNA gyrase subunit A [Entomoplasma freundtii]
          Length = 88

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query: 1  MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
          M+E            I  + I  E++  +L YA++VI+ RA+PDL+DGLKPV RRI++ M
Sbjct: 3  MSEDNKELKPFNHGKIEPIDIAAEIRKDFLEYAMSVIVSRALPDLKDGLKPVQRRIIYAM 62

Query: 61 MQMGVEWNKKYVKCARISGEVMGKYH 86
            +G+  +K + K ARI GEV+GKYH
Sbjct: 63 DDLGITADKPHKKSARIVGEVIGKYH 88


>gi|24020926|gb|AAN40858.1| ParC [Streptococcus mitis]
 gi|24020932|gb|AAN40861.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 74/104 (71%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|124108687|gb|ABM90920.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108713|gb|ABM90933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108717|gb|ABM90935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108749|gb|ABM90951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108751|gb|ABM90952.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108769|gb|ABM90961.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108771|gb|ABM90962.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 69/88 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFR 154
           A RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|24020928|gb|AAN40859.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 74/104 (71%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|218684027|gb|ACL00958.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPH ++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHCDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAH 140
           +DGD  AA RYTE RL K AH
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAH 81


>gi|124108759|gb|ABM90956.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 69/88 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFR 154
           A RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  AMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|71042520|pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-Terminal Domain
 gi|71042521|pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-Terminal Domain
          Length = 256

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 20/216 (9%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + + +S +G+V        R+ +       G+  +  D         ++  V+F  S 
Sbjct: 2   EPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST 53

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y      LP  S + +G+ L   L+L  G  +  ++   +D+       ++ A+  G
Sbjct: 54  GRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAG 105

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIR 714
                  +D +  NR+GK  + L     ++         + +L  T+ G+ + FP+S + 
Sbjct: 106 YGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLP 165

Query: 715 VFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
             +      +  I     A+G+  ++   VL   + 
Sbjct: 166 QLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQST 201



 Score = 45.3 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 91  MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 145

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 146 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 182


>gi|124108685|gb|ABM90919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108737|gb|ABM90945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 71/91 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 2   GHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  SAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|22094466|gb|AAM91912.1|AF498912_1 gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 94

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 5   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 64

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +DGD  AA RYTE RL K AH L+ DL
Sbjct: 65  IDGDSAAAMRYTEIRLAKIAHELMADL 91


>gi|315286960|ref|ZP_07872182.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
 gi|313630887|gb|EFR98581.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
          Length = 75

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 54/73 (73%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
          E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70 KYVKCARISGEVM 82
           Y K ARI GEV+
Sbjct: 63 AYKKSARIVGEVI 75


>gi|313192264|emb|CBY05940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 73/93 (78%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+D
Sbjct: 2   RIGHDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSID 61

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           GD  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  GDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 94


>gi|7682360|gb|AAF67235.1|AF144784_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|7682362|gb|AAF67236.1|AF144785_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREP 91


>gi|218684029|gb|ACL00959.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAH 140
           +DGD  AA RYTE RL K AH
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAH 81


>gi|63849746|emb|CAI72577.1| gyrA protein [Salmonella enterica subsp. enterica serovar Newport]
 gi|63849750|emb|CAI72578.1| gyrA protein [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 83

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/83 (63%), Positives = 67/83 (80%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K
Sbjct: 1   VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGS 160
            AH L+ DL K+TVDF  NYDG+
Sbjct: 61  IAHELMADLEKETVDFVDNYDGT 83


>gi|313192266|emb|CBY05941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 101

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 68/95 (71%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               K +K   +S  V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 5   MTGTKPIKNLPVSLVVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 64

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 65  AAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 99


>gi|112383300|gb|ABI17790.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG++AIY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|1542967|gb|AAB08037.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 69

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +
Sbjct: 1   KPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM 60

Query: 110 LIEGQGNFG 118
           L++G GNFG
Sbjct: 61  LVDGHGNFG 69


>gi|7682364|gb|AAF67237.1|AF144786_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 92

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RMSKIALEILRDINKNTVDFVDNYDANEREP 91


>gi|17432729|gb|AAL39125.1|AF447053_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432731|gb|AAL39126.1|AF447054_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432733|gb|AAL39127.1|AF447055_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432735|gb|AAL39128.1|AF447056_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Brandenburg]
 gi|17432737|gb|AAL39129.1|AF447057_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Havana]
 gi|17432739|gb|AAL39130.1|AF447058_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|17432741|gb|AAL39131.1|AF447059_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|18389126|gb|AAL67622.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389128|gb|AAL67623.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389130|gb|AAL67624.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389132|gb|AAL67625.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389134|gb|AAL67626.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389136|gb|AAL67627.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389138|gb|AAL67628.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389140|gb|AAL67629.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389142|gb|AAL67630.1| DNA gyrase subunit A [Escherichia coli]
          Length = 90

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 68/87 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +DGD  AA RYTE RL K AH L+ DL
Sbjct: 62  IDGDSAAAMRYTEIRLAKIAHELMADL 88


>gi|224613376|gb|ACN60267.1| DNA topoisomerase 2-alpha [Salmo salar]
          Length = 742

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 130/372 (34%), Gaps = 57/372 (15%)

Query: 153 FRPNYDG-SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            + NYD     EP       P VLVNG  GI  G A+ IP  ++ E+V+    +++  + 
Sbjct: 4   LKYNYDDNQRVEPEWYIPIIPTVLVNGADGIGTGWASRIPNFDIREIVNNIHRMLNGEE- 62

Query: 212 DLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                      P  P+     G     + N Y    G + I   + IE          ++
Sbjct: 63  ---------PLPLLPSYKGFKGTIDQLMTNQY-MNNGEVAIIDSTTIE----------IS 102

Query: 270 EIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           E+P +    A  E + E +    EK    I D ++       R V+++      +     
Sbjct: 103 ELPVKTWTQAYKENVLEPMLNGTEKVQALITDYKEYHTDTAVRFVVKMTEERLREAEAAG 162

Query: 327 LYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKY-------- 375
           L++   LQ   + N + L  +     +   +  ILK F   R +  V R  +        
Sbjct: 163 LHKVFKLQQSLTCNSMVLFDHVGSLKKYELVQDILKDFFELRMKYYVLRKDWLAGMLGAE 222

Query: 376 ---LLNKARDRAHVLVGLAIAVANLDEVVRIIRFS----PNPETARRELMQRSWNASDIK 428
              L N+AR     + G  +      + + ++        +P  A +E  ++  +  + +
Sbjct: 223 SAKLTNQARFILEKIEGTLVIENKPKKQLILMLTEMGYDSDPVKAWKEAQEKDRSVEETQ 282

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D  +   +   T                +L + +  LT   ++++  + ++   E+    
Sbjct: 283 DDEEEDKEEDATGPDY----------NYLLNMPMWYLTKEKKEELCKQRDAKMTELNTLK 332

Query: 489 DILSSRSRLLGI 500
               S + L   
Sbjct: 333 K--KSPADLWKE 342


>gi|38569887|gb|AAR24461.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R GKGI+  +++  N  G L  +  VND++ I++++D G +IR  V +I    R+
Sbjct: 1   YPTKGRGGKGIKTANITAKN--GPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRS 58

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVD 904
             GV +    ++ ++V+   + +SE+++
Sbjct: 59  AMGVKVMRLDENAKIVTFALV-KSEVIE 85



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K A        +  + T   + DI++ T  G  +R  ++ I    GR+++GV+ + L + 
Sbjct: 12  KTANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQ-TGRSAMGVKVMRLDEN 70

Query: 733 DQVISMAIVLHA 744
            ++++ A+V   
Sbjct: 71  AKIVTFALVKSE 82


>gi|112383286|gb|ABI17783.1| gyrase [Streptococcus suis]
 gi|112383288|gb|ABI17784.1| gyrase [Streptococcus suis]
 gi|112383290|gb|ABI17785.1| gyrase [Streptococcus suis]
 gi|112383292|gb|ABI17786.1| gyrase [Streptococcus suis]
 gi|112383294|gb|ABI17787.1| gyrase [Streptococcus suis]
 gi|112383296|gb|ABI17788.1| gyrase [Streptococcus suis]
 gi|112383298|gb|ABI17789.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|270707329|ref|ZP_06223100.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
 gi|270315774|gb|EFA27905.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
          Length = 170

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +I  ++ I+  Y  GRGSI +R     E       +I+++ +P+Q + + ++ +IA+ + 
Sbjct: 1   IISPKSEIRKIYEQGRGSIKMRATWKKEDG-----EIIISALPHQSSPSKVIAQIADQMT 55

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-G 346
            K++  + D+RDE+D +    ++ + R      D ++  L+  T L+  + VNM  +   
Sbjct: 56  AKKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLD 115

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           +KP    L+ IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+
Sbjct: 116 HKPAVKGLLEILNEWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVI 170


>gi|22094460|gb|AAM91909.1|AF498909_1 gyrase A [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 90

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 67/87 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADL 87


>gi|23345305|gb|AAN28728.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R GKGI+  +++  N  G L  +  VND++ I++++D G +IR  V +I    R+
Sbjct: 1   YPTKGRGGKGIKTANITAKN--GPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRS 58

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVD 904
             GV +    ++ ++V+   + +SE+++
Sbjct: 59  AMGVKVMRLDENAKIVTFALV-KSEVIE 85



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K A        +  + T   + DI++ T  G  +R  ++ I    GR+++GV+ + L + 
Sbjct: 12  KTANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQ-TGRSAMGVKVMRLDEN 70

Query: 733 DQVISMAIVLHA 744
            ++++ A+V   
Sbjct: 71  AKIVTFALVKSE 82


>gi|27542599|gb|AAO16900.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +DGD  AA RYTE RL K AH L+ DL
Sbjct: 62  IDGDSAAAMRYTEIRLAKIAHELMADL 88


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                    +  I  + I++ +    + +++     R+IP + DG KP  R++L+G  + 
Sbjct: 620 QAFRPGTHLDPQIREIPISEFINKELILFSM-ADNVRSIPSILDGFKPGQRKVLYGCFKR 678

Query: 64  GVEWNKKYVKCARISGEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV 120
            +      +K A++ G +     + HG  ++   +  +AQ++  +  L L++  G FGS 
Sbjct: 679 NLRSE---IKVAQLVGYISEHTGYHHGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSR 735

Query: 121 --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
              G   +A RY    +      + + L  D   +  + 
Sbjct: 736 AAGGKDFSAVRYIHTNITDLTRVIFNPLDDDLYTYVQDD 774


>gi|24020922|gb|AAN40856.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 73/104 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 104


>gi|1498007|gb|AAB06320.1| DNA gyrase A subunit [Campylobacter lari subsp. lari]
          Length = 77

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+
Sbjct: 1   HRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSID 60

Query: 113 GQGNFGSVDGDPPAAER 129
           GQGNFGS+DGD  AA R
Sbjct: 61  GQGNFGSIDGDGAAAMR 77


>gi|33316580|gb|AAQ04610.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 97

 Score =   99 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F  STH  +LFF++ G VY+ K + LP     ARG+ + N+L+    ERI  ++   
Sbjct: 6   RRHFCCSTHDWILFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIK 65

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             E   +  Y+V AT++G V+++KL+DF      G
Sbjct: 66  SYE---DAPYLVLATQNGLVKKSKLTDFDSNRSGG 97



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESE 901
           F  + +D I+  + +G + R    E+  A R  +G  + +      +ER+  V +I+  E
Sbjct: 9   FCCSTHDWILFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE 68

Query: 902 IV 903
             
Sbjct: 69  DA 70


>gi|269967411|ref|ZP_06181471.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269827999|gb|EEZ82273.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 277

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 21/231 (9%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                + + D +  E + V +S  G++        R  +       G+  +  D      
Sbjct: 5   AEAKALTERDLVPSEPITVVLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHA 56

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
              ++   +F  S G  Y  +   LP  S +++G+ +   L++  G  I  ++   ED+ 
Sbjct: 57  RGKSNQPAVFLGSDGRSYSLESHSLP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ- 113

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLT 699
                  +  +  G     K +D +  NRSGK  + L +  EI++ +       ++IL  
Sbjct: 114 -----LWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAI 168

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADAD 747
           T  G+ + FPI  +   A      +  I      + ++V+S  + L   A 
Sbjct: 169 TNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMSLPKGAS 219



 Score = 41.8 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 28/214 (13%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +         G + ++ A+G        +      Y
Sbjct: 15  LVPSEPITVVLSEKGWIRHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVFLGSDGRSY 74

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S  R   +  ++Q  L  S+ G+
Sbjct: 75  SLESHSLPSARSQGEPITGRLNITAG-----------SSIRQVIMSEEDQLWLVGSDAGY 123

Query: 809 GKRTSSYDFRISNRSGKGIRAT----DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           G      D    NRSGK +       ++    EI  L       D+D+I+ ++++G ++ 
Sbjct: 124 GFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDL-------DSDEILAITNQGRMLL 176

Query: 865 VPVNEIRIASRATKGVVIFST-----AKDERVVS 893
            P+ ++   ++  KG  I +       + E V+S
Sbjct: 177 FPIKDLPQLAKG-KGNKIINIPAAKAKEREEVLS 209


>gi|27542593|gb|AAO16897.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 2   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +DGD  AA RYTE RL K AH L+ DL
Sbjct: 62  IDGDSAAAMRYTEIRLAKIAHELMADL 88


>gi|112383308|gb|ABI17794.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDFAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD + +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSNEREP 92


>gi|112383302|gb|ABI17791.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDYAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSSEREP 92


>gi|112383304|gb|ABI17792.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|530409|emb|CAA83715.1| DNA gyrase (A) [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 200

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 16/192 (8%)

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----ADYDERICYMKHMS 759
              R  IS           G + I+L + DQ++S+      D    A+   ++  +K   
Sbjct: 1   MIKRTKISEFENINRN---GKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESV 57

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
              +   G       L+ +  V G IS         K   I TVS KG  K+T   D+RI
Sbjct: 58  VNPQSRVGSGVRALKLETNDVVVGAIS-------SFKLTHITTVSNKGLFKKTPIDDYRI 110

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           S R+GKGI+  ++++    G   A+    + D I+++S  G LI+  V+ I   SR   G
Sbjct: 111 SGRNGKGIKVMNLNQR--TGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASG 168

Query: 880 VVIFSTAKDERV 891
           V     A  + +
Sbjct: 169 VKAIRLADXQEI 180



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R K+S+F  INR+GK A+ L   D+++SV   T ++ I +  + G+ +R   S +  
Sbjct: 1   MIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNP 60

Query: 716 FAGRNSVGVRGISLAKGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            + R   GVR + L   D V+    +  L        +  + K      R+   + + I 
Sbjct: 61  QS-RVGSGVRALKLETNDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIK 119

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            +  +       +    +E  L    IL +S  G   +T   +    +R+  G++A  ++
Sbjct: 120 VMNLNQRTGKFKAIIDARETDL----ILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLA 175

Query: 834 KINEIGA 840
              EI A
Sbjct: 176 DXQEINA 182



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT   +F   NR+GK           E   LV+VF     D I + ++ G +IR+  + 
Sbjct: 3   KRTKISEFENINRNGKKAINLR-----ENDQLVSVFATTGQDTIFIANESGKVIRIKESV 57

Query: 870 IRIASRATKGVVIFSTAKDERVVS 893
           +   SR   GV       ++ VV 
Sbjct: 58  VNPQSRVGSGVRALKLETNDVVVG 81



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 15/191 (7%)

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +S +    R GK    + +R+ D +  +F  +   ++   +  G V + K   + 
Sbjct: 2   IKRTKISEFENINRNGK--KAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVN 59

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S    G   +  L L   + +   +      SS+   ++   +  G  ++  + D+  
Sbjct: 60  PQSRVGSG---VRALKLETNDVVVGAI------SSFKLTHITTVSNKGLFKKTPIDDYRI 110

Query: 668 INRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             R+GK    ++      +  ++    + + IL+ +  G  ++  +S I   + RN+ GV
Sbjct: 111 SGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLS-RNASGV 169

Query: 725 RGISLAKGDQV 735
           + I LA   ++
Sbjct: 170 KAIRLADXQEI 180



 Score = 44.1 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D +   +  G V R+  SV   Q R G G   + +   D V         T +   S+ 
Sbjct: 38  QDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFKLTHITTVSNK 97

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G   K  +    I     +G  ++N L+   G +   I+   E +       ++  +  G
Sbjct: 98  GLFKKTPIDDYRISGRNGKGIKVMN-LNQRTG-KFKAIIDARETD------LILIISSDG 149

Query: 656 NVRRNKLSDFIQINRS--GKIAMKLDSRDEI 684
           N+ + K+S+   ++R+  G  A++L    EI
Sbjct: 150 NLIKTKVSNIPSLSRNASGVKAIRLADXQEI 180


>gi|260363423|ref|ZP_05776273.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
 gi|308111420|gb|EFO48960.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
          Length = 270

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 104/281 (37%), Gaps = 29/281 (10%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             + + D +  E + V +S  G+V        R  +        +  +  D         
Sbjct: 1   KALTERDLVPSEPITVVLSEKGWV--------RHAKGHDVDAESLNYKSGDKYLAHARGK 52

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           +    +F  S G  Y  +   LP  S +++G+ +   L++  G  I  ++   ED+    
Sbjct: 53  SSQPAVFLGSDGRSYSLESHSLP--SARSQGEPITGRLNITAGSSIRQVIMSEEDQ---- 106

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKL 702
               +  +  G     K +D +  NRSGK  + L +  E+++ +       ++IL  T  
Sbjct: 107 --LWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQ 164

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           G+ + FPI  +   A      +  I      + ++V+S  I L   A           + 
Sbjct: 165 GRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASL--------TLY 216

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           A +R +     ++ + + +    G++     Q +   +  +
Sbjct: 217 AGKRKLGLKPADLENFRGERGRRGSLLPRGLQRVTRIDVEL 257



 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 20/210 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
               E   ++ ++ G         +   +     G + ++ A+G        +      Y
Sbjct: 8   LVPSEPITVVLSEKGWVRHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSY 67

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 +    +Q   I+G                  S  R   +  ++Q  L  S+ G+
Sbjct: 68  SLESHSLPSARSQGEPITGRLNITAG-----------SSIRQVIMSEEDQLWLVGSDAGY 116

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           G      D    NRSGK +     +        V      D+D+I+ ++++G ++  P+ 
Sbjct: 117 GFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDL---DSDEILAITNQGRMLLFPIK 173

Query: 869 EIRIASRATKGVVIFST-----AKDERVVS 893
           ++   ++  KG  I +       + E V+S
Sbjct: 174 DLPQLAKG-KGNKIINIPAAKAKEREEVLS 202


>gi|22094464|gb|AAM91911.1|AF498911_1 gyrase A [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 97

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDL 146
           +DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADL 87


>gi|60477489|gb|AAX21681.1| ParC [Francisella novicida]
 gi|213950468|gb|ACJ54507.1| ParC [Francisella sp. FSC159]
 gi|213950470|gb|ACJ54508.1| ParC [Francisella novicida]
 gi|213950472|gb|ACJ54509.1| ParC [Francisella novicida]
 gi|213950474|gb|ACJ54510.1| ParC [Francisella novicida]
          Length = 174

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|313760372|emb|CBY65970.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760376|emb|CBY65972.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760378|emb|CBY65973.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 53/79 (67%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTEC 133
           GNFGS   DPPAA RYTE 
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|213950466|gb|ACJ54506.1| ParC [Francisella sp. FSC156]
          Length = 174

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++       ++   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|551907|gb|AAA91334.1| topoisomerase II subunit A [Mycoplasma gallisepticum]
          Length = 86

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          ++K I    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2  DKKKIFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72 VKCARISGEVMGKYHPHGNAAIYDA 96
           K A   GEV+GK+HPHG+++IY+A
Sbjct: 62 RKSAATVGEVIGKFHPHGDSSIYEA 86


>gi|227496005|ref|ZP_03926316.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834493|gb|EEH66876.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 310

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 115/320 (35%), Gaps = 28/320 (8%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +   V +S  G V RV  +   A  R G+ +        D +T     +  + V   +
Sbjct: 9   PDDPCRVLLSATGLVARVAGA--EAVPRTGERQR------HDALTSQVPTTARSRVGVVT 60

Query: 594 SLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             G +   +V   P           A G+ +  ++ L  GE +  ++P  E +       
Sbjct: 61  DTGRLVVMEVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQREP---- 116

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV AT  G ++R K  D           + L   D ++        + + L T   Q +R
Sbjct: 117 VVLATAGGVIKRVKPGDEPA-RGESWEVISLADGDRVVFAGIAADTDVLTLVTDDAQLLR 175

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  S +R   GR + G+ GISL +G +VI+ A V  A+   +  +  +         +  
Sbjct: 176 FEASKVRP-QGRGAAGMAGISLHEGARVIAGASV-PAELLAEAVVVTIADAEGALPGMDS 233

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            + ++T L    +        R Q     E   L V+  G G        R     G+G+
Sbjct: 234 GSVKVTPLDRYPAKGRATGGVRAQRFLRGEDQ-LVVAWVGVG------PARAVGSGGQGV 286

Query: 828 RATDVSKINEIGALVAVFPV 847
              +V +  +        PV
Sbjct: 287 ALPEVDERRDASGTALSAPV 306



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 93/275 (33%), Gaps = 32/275 (11%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +   R+G+        D + S    T  + + + T  
Sbjct: 9   PDDPCRVLLSATGLVARVAGAEAVP--RTGERQRH----DALTSQVPTTARSRVGVVTDT 62

Query: 703 GQCVRFPI----SAIRVFAGRNSVGVR----GISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   +       R+    +  G +     + L  G+ V+   +V   +A  +  +  
Sbjct: 63  GRLVVMEVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVG--LVPVGEAQREPVVLA 120

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                 +R     +     S +  S  +G         +      +  V++     R  +
Sbjct: 121 TAGGVIKRVKPGDEPARGESWEVISLADG--DRVVFAGIAADTDVLTLVTDDAQLLRFEA 178

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS-----------DKGTLI 863
              R   R   G+    + +   + A  +V P     + ++V+           D G++ 
Sbjct: 179 SKVRPQGRGAAGMAGISLHEGARVIAGASV-PAELLAEAVVVTIADAEGALPGMDSGSVK 237

Query: 864 RVPVNEIRIASRATKGVVIFS-TAKDERVVSVERI 897
             P++      RAT GV        ++++V V  +
Sbjct: 238 VTPLDRYPAKGRATGGVRAQRFLRGEDQLV-VAWV 271



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + + + ++  +  G  KR    D       G+      ++  +    +V      D D +
Sbjct: 111 EAQREPVVLATAGGVIKRVKPGDEPAR---GESWEVISLADGDR---VVFAGIAADTDVL 164

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            LV+D   L+R   +++R   R   G+   S  +  RV++   +    + +
Sbjct: 165 TLVTDDAQLLRFEASKVRPQGRGAAGMAGISLHEGARVIAGASVPAELLAE 215


>gi|112383310|gb|ABI17795.1| gyrase [Streptococcus suis]
 gi|112383312|gb|ABI17796.1| gyrase [Streptococcus suis]
 gi|112383314|gb|ABI17797.1| gyrase [Streptococcus suis]
 gi|112383316|gb|ABI17798.1| gyrase [Streptococcus suis]
 gi|112383318|gb|ABI17799.1| gyrase [Streptococcus suis]
 gi|112383320|gb|ABI17800.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 98.8 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIYDA+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYDAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV++  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNYADNYDASEREP 92


>gi|112383306|gb|ABI17793.1| gyrase [Streptococcus suis]
          Length = 92

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDIAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFSDNYDASEREP 92


>gi|7682366|gb|AAF67238.1|AF144787_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 71/91 (78%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A  RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEATVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREP 91


>gi|323695904|gb|ADX99576.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 67

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVH RIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHCRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQDWSL 106
           MAQD+S 
Sbjct: 61  MAQDFSY 67


>gi|37542701|gb|AAM13689.1| DNA gyrase [Mycobacterium celatum]
          Length = 147

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 581 FIVSTHTSVLFFSSL-GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           F+ STH  +       G     +        P+A      N  +    ERI  ++     
Sbjct: 1   FVCSTHDWICSSPPRAGCTAPRRTTCPRRRGPRAASM-WANWWAFKPEERIAQVIQIRSY 59

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           E   +  Y+V AT++G V++ KL+DF      G +A+ L   DE++    C+ ++D+LL 
Sbjct: 60  E---DAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDGDELVGAVLCSADDDLLLV 116

Query: 700 TKLGQCVRFPISAIRVF-AGRNSVGVRGISL 729
           +  GQ +RF  +   +   GR + GV+G+ +
Sbjct: 117 SANGQSIRFSATDEALRPMGRATSGVQGMRV 147



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                +++  +  G  K+T   DF  SNRSG GI A ++   +E   LV     + +D +
Sbjct: 59  YEDAPYLVLATRNGLVKKTKLTDFD-SNRSG-GIVAINLRDGDE---LVGAVLCSADDDL 113

Query: 854 ILVSDKGTLIRVPVNE--IRIASRATKGVVIFST 885
           +LVS  G  IR    +  +R   RAT GV     
Sbjct: 114 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRV 147


>gi|27542595|gb|AAO16898.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+
Sbjct: 3   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSI 62

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDL 146
           DGD  AA RYTE RL K AH L+ DL
Sbjct: 63  DGDSAAAMRYTEIRLAKIAHELMADL 88


>gi|60477495|gb|AAX21684.1| ParC [Francisella tularensis subsp. mediasiatica FSC147]
 gi|60477497|gb|AAX21685.1| ParC [Francisella tularensis subsp. mediasiatica]
 gi|213950476|gb|ACJ54511.1| ParC [Francisella novicida]
          Length = 174

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|312183507|gb|ADQ42323.1| topoisomerase IV subunit A [Actinobaculum schaalii]
          Length = 93

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 69/94 (73%), Gaps = 1/94 (1%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M QMG+  ++ +VK +R+ G+VMG+ HPHG+ AIYDA+ R+AQ +++RL L++G
Sbjct: 1   RRILFQMGQMGLRPDRAHVKSSRVVGDVMGRLHPHGDTAIYDAMVRLAQPFTMRLPLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
            GNFGS+D D PAA RYTE RL   A  ++  L 
Sbjct: 61  HGNFGSLD-DGPAASRYTEARLAAPAMAMISSLD 93


>gi|24020924|gb|AAN40857.1| ParC [Streptococcus mitis]
          Length = 102

 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 72/102 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
            GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 102


>gi|27542579|gb|AAO16890.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNTAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVD 152
           A RYTE RL K AH L+ DL K+TVD
Sbjct: 62  AMRYTEIRLAKIAHELMADLEKETVD 87


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                 +  ++ + I++ +    + +++     R+I  + DG KPV R+IL+   +  + 
Sbjct: 645 QPGTYLDSTLSDIPISEFINKELILFSM-ADNVRSIASVMDGFKPVQRKILYACYKRNLR 703

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DG 122
              K  +      E  G +H  G+A++  ++  +AQD+  S  + L+   G FGS    G
Sbjct: 704 DEIKVSQLEGYIAEHTGYHH--GDASLMQSIIGLAQDFVGSNNINLLVPHGGFGSRAAGG 761

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
              AA RY    L      + + L    + +  + + + +   
Sbjct: 762 KDAAAARYIFTELSAITRKIFNPLDNPLLTYVQDDEQTVEPEW 804


>gi|190334100|gb|ACE73898.1| topoisomerase IV subunit A [Bartonella vinsonii]
          Length = 100

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  LI+GQGNFG++DGD  AA RYTE 
Sbjct: 1   CARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           R+ + A  LL+ + ++ +DFR  Y+   +EPVVL 
Sbjct: 61  RMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLP 95


>gi|329124305|gb|AEB72030.1| DNA topoisomerase IV subunit C [Aeromonas sp. 34(2011)]
          Length = 82

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 53/76 (69%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKP  RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R 
Sbjct: 1   LKPDQRRIVYAMSELGLNASSKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDP 124
            L++GQGN+G+ D   
Sbjct: 61  PLVDGQGNWGAPDDPK 76


>gi|313609053|gb|EFR84774.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 104/264 (39%), Gaps = 58/264 (21%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILS 686
           E I +++     ++       +F TK+G  +++ ++++         +A+KL   DE+LS
Sbjct: 1   EEIRSVIAI---QAFTEEQRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLS 57

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V       DI L TK G  +R+ ++ I     R + GV+ I+L + D VI   +++  + 
Sbjct: 58  VHLIDGTEDIFLATKNGYGLRYAVAEIPESGARTA-GVKAINLKQDDMVIGGVVLMPNE- 115

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                             ++ IL  +++
Sbjct: 116 --------------------------------------------------QKHILLATQR 125

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+  + +F   +R+ +G+      K N     + +   ++ND + + ++   ++ + 
Sbjct: 126 GSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEID 184

Query: 867 VNEIRIASRATKGVVIFS-TAKDE 889
           V  +RI  R + G  +   T + E
Sbjct: 185 VANLRITDRYSNGSFVLDETMEGE 208



 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +EQ  L V++ G  K+++  +++   R  K + A  +   +E   L++V  ++  + I 
Sbjct: 13  TEEQRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIKLKGDDE---LLSVHLIDGTEDIF 68

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           L +  G  +R  V EI  +   T GV   +  +D+ V+    +  +E
Sbjct: 69  LATKNGYGLRYAVAEIPESGARTAGVKAINLKQDDMVIGGVVLMPNE 115



 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           E +  +        E   + V+  G  K+  ++ Y+ QR   K    + ++ +D +  + 
Sbjct: 1   EEIRSVIAIQAFTEEQRFLFVTKNGMTKQSAITNYKPQRYS-KSMMAIKLKGDDELLSVH 59

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           ++     +   +  G+  +  V  +P    +  G   IN+        I  ++  P ++ 
Sbjct: 60  LIDGTEDIFLATKNGYGLRYAVAEIPESGARTAGVKAINL--KQDDMVIGGVVLMPNEQK 117

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS----RDEILSVETCTQENDIL 697
                +++ AT+ G++++ K S+F  I+R+ +  + L          + +      + + 
Sbjct: 118 -----HILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPHRFIGITLADNNDHLF 172

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVG 723
           + T   Q V   ++ +R+   R S G
Sbjct: 173 IETNTDQIVEIDVANLRI-TDRYSNG 197


>gi|27542577|gb|AAO16889.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|27542583|gb|AAO16892.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 66/84 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDL 146
           D  AA RYTE RL K AH L+ DL
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADL 85


>gi|321268220|gb|ADW78918.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 89

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 69/89 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+
Sbjct: 1   DRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKE 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  TVDFQLNFDDTLYEPKVMPTKVPTLLING 89


>gi|153830649|ref|ZP_01983316.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
 gi|148873858|gb|EDL71993.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
          Length = 254

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 96/262 (36%), Gaps = 29/262 (11%)

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 1   VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 52

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP  S + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 53  LESHTLP--SARGQGEPITGRLNVAEGTTIRQVVMGEEDQ------LWLVGSDAGYGFVC 104

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 105 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSK 164

Query: 719 RNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                +  I  AK    ++V+S  +VL   A           + A +R +     ++ + 
Sbjct: 165 GKGNKIINIPAAKAKTREEVLSNLMVLPQGASI--------TLYAGKRKLGLKVSDLDNF 216

Query: 776 KNDSSVEGNISEERCQELKLKE 797
           + +    G +     Q +   E
Sbjct: 217 RGERGRRGALLPRGLQRVTAIE 238



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++A     
Sbjct: 81  RQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADL--- 137

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           DND+I+ ++++G ++  P+ ++   S+  KG  I + 
Sbjct: 138 DNDEILAITNQGRMLLFPIKDLPQLSKG-KGNKIINI 173


>gi|261599205|gb|ACX85665.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 74/106 (69%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
              ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGD
Sbjct: 1   KHTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           PPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP  L A
Sbjct: 61  PPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTALPA 106


>gi|3108059|gb|AAC15758.1| gyrase A [Enterococcus faecium]
          Length = 80

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/79 (58%), Positives = 61/79 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++GV  +K + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGS
Sbjct: 2   MNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGS 61

Query: 120 VDGDPPAAERYTECRLQKA 138
           VDGD  AA RYTE R+ K 
Sbjct: 62  VDGDGAAAMRYTEARMSKI 80


>gi|27542587|gb|AAO16894.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score = 97.7 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 64/84 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLD 144
           DGD  AA RYTE RL K AH L+ 
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMA 84


>gi|218677322|ref|ZP_03525219.1| DNA topoisomerase IV subunit A [Rhizobium etli CIAT 894]
          Length = 78

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 50/77 (64%)

Query: 6  ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
          +     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M +MG+
Sbjct: 1  MPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGL 60

Query: 66 EWNKKYVKCARISGEVM 82
               + KCA+I GEVM
Sbjct: 61 RPTSAFKKCAKIVGEVM 77


>gi|313760374|emb|CBY65971.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 54/79 (68%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G   ++ + K AR   E MG YHPHG+A+IY +L RMAQ WSLR  L++GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYASLVRMAQPWSLRYPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTEC 133
           GNFGS   DPPAA RYTE 
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|259493809|gb|ACW82745.1| DNA gyrase subunit A [Vibrio cholerae]
          Length = 80

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/80 (60%), Positives = 62/80 (77%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   NVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAH 140
           DGD  AA RYTE R+ K AH
Sbjct: 61  DGDSAAAMRYTEVRMSKIAH 80


>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 99/282 (35%), Gaps = 67/282 (23%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  ++ +    + +++   + R+IP +  GLKP  R++++G  +  ++   K  
Sbjct: 697 DHRLEEIPYSEFINKELILFSMANNV-RSIPSIAYGLKPGQRKVIWGCFKRKLKKEIKVE 755

Query: 73  KCARIS-GEV-MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAE 128
             AR S G +     + HG A++   +  +AQD+  S  L L+                 
Sbjct: 756 IFARSSNGYISEHAAYHHGEASLAATIINLAQDFVGSNNLALLSPS-------------- 801

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG--M 186
                                        D    EP       P VL+NG  GI  G  +
Sbjct: 802 ---------------------------LDDDVPIEPEWHMPTVPMVLINGAEGIGTGSRL 834

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP +N  ++V      +   +++             P      G  G       G+G
Sbjct: 835 DTNIPPYNPIDIVANIRRKMKGEELE-------------PMTPWWRGFKG--EVRPPGKG 879

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
              + GV+    T  +   + ++E+P         + +  ++
Sbjct: 880 KYDVVGVA----TKINDTTVEISELPIHKWTRTFKDDLEVMI 917


>gi|60477417|gb|AAX21645.1| ParC [Wolbachia persica]
          Length = 174

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   EVYKSGNGSIRQQAVYGYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  + VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATTKKNIKKIMEHLLATTDLEKSYRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL +A  N+DEV+ IIR   +P
Sbjct: 118 DILNQWLEYRKHTLRRRLQASLDKVLDRLHILEGLLVAFLNIDEVIDIIRNYDDP 172


>gi|60477487|gb|AAX21680.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477499|gb|AAX21686.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477501|gb|AAX21687.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477505|gb|AAX21689.1| ParC [Francisella tularensis subsp. holarctica FSC200]
 gi|60477511|gb|AAX21692.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IKDESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477483|gb|AAX21678.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477485|gb|AAX21679.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|312299479|gb|ADQ73655.1| GyrA [Neisseria meningitidis]
          Length = 80

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 60/80 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQ 136
           FGSVDG   AA RYTE R+ 
Sbjct: 61  FGSVDGLAAAAMRYTEIRMA 80


>gi|27542601|gb|AAO16901.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/82 (60%), Positives = 64/82 (78%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD 
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDL 146
            AA RYTE RL K AH L+ DL
Sbjct: 61  AAAMRYTEIRLAKIAHELMADL 82


>gi|69250182|ref|ZP_00605118.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
 gi|68193990|gb|EAN08550.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
          Length = 251

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 12/196 (6%)

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y A +       G+  +  D         ++  V+F  S G  Y      LP  S + +G
Sbjct: 9   YAALKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQG 66

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + L   L+L  G  +  ++   +D+       ++ A+  G       +D +  NR+GK  
Sbjct: 67  EPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKAL 120

Query: 676 MKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI---SLAK 731
           + L     ++         + +L  T+ G+ + FP+S +   +      +  I     A+
Sbjct: 121 ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAAR 180

Query: 732 GDQVISMAIVLHADAD 747
           G+  ++   VL   + 
Sbjct: 181 GEDGLAQLYVLPPQST 196



 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++    + D +D
Sbjct: 86  MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASD 140

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 141 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAE 177


>gi|60477491|gb|AAX21682.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477503|gb|AAX21688.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477509|gb|AAX21691.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 97/174 (55%), Gaps = 7/174 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +  S     +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHSN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|27542581|gb|AAO16891.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/82 (60%), Positives = 65/82 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD 
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDL 146
            AA RYTE RL K AH L+ DL
Sbjct: 61  AAAMRYTEIRLAKIAHELMADL 82


>gi|262411034|gb|ACY66883.1| GyrA [Salmonella enterica]
          Length = 64

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD++ RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPF 60

Query: 105 SLRL 108
           SLR 
Sbjct: 61  SLRY 64


>gi|27542597|gb|AAO16899.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 63/80 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDL 146
           A RYTE RL K AH L+ DL
Sbjct: 61  AMRYTEIRLAKIAHELMADL 80


>gi|218672927|ref|ZP_03522596.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 305

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 93/260 (35%), Gaps = 27/260 (10%)

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---EDC 532
             E  E   +L+S  +    +  E+  VK +         RRT+  +     E    +  
Sbjct: 8   LKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEQAIQQAM 67

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L  
Sbjct: 68  IEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIV 119

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G  +     +LP G  +  G+ L  ++ ++  + + T                +  +
Sbjct: 120 TTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAVLTAFVHDPARKQ------LIVS 171

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             GN      ++ +   R GK  M +   +E   +      + + +  +  + + FP++ 
Sbjct: 172 TAGNGFVVAEAELVANTRKGKQIMNVALPEETQLLVPVCG-DHVAVVGENRKLLVFPLAQ 230

Query: 713 IRVFAGRNSVGVRGISLAKG 732
           +   +     GVR      G
Sbjct: 231 VPEMS--RGKGVRLQRYKDG 248


>gi|60477493|gb|AAX21683.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477507|gb|AAX21690.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 96/174 (55%), Gaps = 7/174 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|3152672|gb|AAC17114.1| DNA gyrase subunit A [Shigella flexneri]
          Length = 81

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR  G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARAVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLD 144
             AA RYTE RL K AH L+ 
Sbjct: 61  SAAAMRYTEIRLAKIAHELMA 81


>gi|213025398|ref|ZP_03339845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 98

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 48/75 (64%)

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV 
Sbjct: 1   MTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVG 60

Query: 894 VERIRESEIVDEAES 908
           ++R+ E    +E ++
Sbjct: 61  LQRVAEPVDDEELDA 75



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++        + I++ T  G  VR  +S I V   RN+ GV  I  A+ + V+ +  V  
Sbjct: 8   VVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVG-RNTQGVILIRTAEDENVVGLQRVAE 66

Query: 744 ADADYD 749
              D +
Sbjct: 67  PVDDEE 72


>gi|294463058|gb|ADE77067.1| unknown [Picea sitchensis]
          Length = 183

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 37/192 (19%)

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S G+  + L   D+V SM IV  A    + +   +   S  + + +            
Sbjct: 15  RKSRGLISMRLRGEDKVASMDIV-PAAVQQELKNALLSSKSQGKTITA------------ 61

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                               ++L VSE G+GKR     FRI+     G+    +   + +
Sbjct: 62  -------------------PWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRV 102

Query: 839 GA--LVAVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            A  +V +   +D   ++Q++LVS  G + R+ V  I I SR  KGV +       ++ S
Sbjct: 103 AALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKGVRLMRLEHGGKIQS 162

Query: 894 VERIRESEIVDE 905
           V  +  SE+  +
Sbjct: 163 VSVVGPSEVQSD 174



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVET 689
            ++       +    +++  ++ G  +R  LS F    + R G I  KL   D + ++  
Sbjct: 48  ALLSSKSQGKTITAPWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRVAALFV 107

Query: 690 C--------TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
                      +  ++L +  G   R  + AI + + R + GVR + L  G ++ S+++V
Sbjct: 108 VGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQS-RTAKGVRLMRLEHGGKIQSVSVV 166

Query: 742 LHADADYD 749
             ++   D
Sbjct: 167 GPSEVQSD 174



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +   LL  + +   +    ++ VS  GY KRVPLS +R       G  G  +  ED V 
Sbjct: 44  ELKNALLSSKSQGKTITAPWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRVA 103

Query: 579 DLFIV--------STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            LF+V         +   V+  S  G V +  V  + I S  A+G   + ++ L  G +I
Sbjct: 104 ALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKG---VRLMRLEHGGKI 160

Query: 631 TTIMPFPEDESSWNNL 646
            ++      E   +  
Sbjct: 161 QSVSVVGPSEVQSDGP 176


>gi|315613996|gb|ADU52598.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 80

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 60/80 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQ 136
           FGSVDG   AA RYTE R+ 
Sbjct: 61  FGSVDGLAAAAMRYTEIRMA 80


>gi|93278244|gb|ABF06587.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 91

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 67/91 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 91


>gi|265983859|ref|ZP_06096594.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662451|gb|EEZ32712.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 269

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 27/233 (11%)

Query: 508 VKDELD-----TPRRTRIVEGLL-DMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           ++++         RRT      + D+ED     I RE + + VS  G++        RA 
Sbjct: 1   MREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAM 52

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +      S +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ + 
Sbjct: 53  KGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIR 110

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            ++ +   + I T            +  ++  +  GN      S+ +   R GK  M + 
Sbjct: 111 ILVDMENDQDILTAFV------HDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVK 164

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + DE    +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 165 APDEAKLCQRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 214


>gi|89243027|gb|ABD64769.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 94

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 9/102 (8%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A  VIL RAIP + DGLKPV RRIL  +  M    + K  K A ++G+ M  YHPHG+A 
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTEC 133
           I +AL  M    + R  L++ QGNFG++  GDP AA RY E 
Sbjct: 57  ITEALVNM----ANRGYLLDQQGNFGNIFTGDPAAAARYIET 94


>gi|323695898|gb|ADX99573.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 55/64 (85%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 100 MAQD 103
           MAQD
Sbjct: 61  MAQD 64


>gi|27542589|gb|AAO16895.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 83

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 63/80 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 2   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 61

Query: 127 AERYTECRLQKAAHFLLDDL 146
           A RYTE RL K AH L+ DL
Sbjct: 62  AMRYTEIRLAKIAHELMADL 81


>gi|289677156|ref|ZP_06498046.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 80

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 60/80 (75%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K
Sbjct: 1   GDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHK 60

Query: 149 DTVDFRPNYDGSFQEPVVLC 168
           +TVD+ PNYDG+   P VL 
Sbjct: 61  ETVDWVPNYDGTEMIPAVLP 80


>gi|3152711|gb|AAC17124.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 77

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 61/76 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKA 138
           D  AA+RYTE R+ K 
Sbjct: 61  DSAAAQRYTEARMSKI 76


>gi|27542591|gb|AAO16896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 51/80 (63%), Positives = 63/80 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDL 146
           A RYTE RL K AH L+ DL
Sbjct: 61  AMRYTEIRLAKIAHELMADL 80


>gi|323695902|gb|ADX99575.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 66

 Score = 94.6 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 54/65 (83%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ 
Sbjct: 2   ARALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMV 61

Query: 99  RMAQD 103
           RMAQD
Sbjct: 62  RMAQD 66


>gi|118139698|gb|ABK63295.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A   L DL KDTV
Sbjct: 61  DNAAAMRYTEARMTRIAEEALRDLDKDTV 89


>gi|74149415|dbj|BAE36361.1| unnamed protein product [Mus musculus]
          Length = 375

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 120/340 (35%), Gaps = 51/340 (15%)

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
             G +  IP  ++ EVV+    ++D  +            P  P+     G    + +  
Sbjct: 1   GTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIEELASNQ 50

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIAD 298
               G + I   + IE          ++E+P +       E++ E +    EK    I D
Sbjct: 51  YVINGEVAILDSTTIE----------ISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITD 100

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PERFTLI 355
            R+       + VI++     A+     L++   LQS  + N + L  +     +  T++
Sbjct: 101 YREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVL 160

Query: 356 GILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVAN----LDEV 400
            IL+ F   R +    R ++LL           N+AR     + G  +        L +V
Sbjct: 161 DILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKV 220

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +    +  +P  A +E  Q+  +  + ++       S     +  T          +L++
Sbjct: 221 LIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTF-------NYLLDM 273

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            L  LT   +D++  + N    E+        S S L   
Sbjct: 274 PLWYLTKEKKDELCKQRNEKEQELNTLKQ--KSPSDLWKE 311


>gi|323695900|gb|ADX99574.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQD 103
           MAQD
Sbjct: 61  MAQD 64


>gi|194294671|gb|ACF40330.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 79

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 55/78 (70%)

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ AIY  + RMAQ WS+R  L++GQGNFGS   D PAA RYTE RL   A  ++ D+
Sbjct: 1   PHGDIAIYGTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARLTPLAMEMVRDI 60

Query: 147 GKDTVDFRPNYDGSFQEP 164
            ++TVDF+PNYDG   EP
Sbjct: 61  RENTVDFQPNYDGRTTEP 78


>gi|167465536|ref|ZP_02330625.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 86

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKGI+  +V+  N  G +V +  V +++ +++++  GT+IR  ++ I I  R T+GV + 
Sbjct: 1   GKGIKTLNVTSKN--GPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLI 58

Query: 884 STAKDERVVSVERI 897
           +T +D+ V +V R+
Sbjct: 59  NTREDDEVATVTRV 72



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K          ++ ++   ++ D+++ T  G  +R  +S I +   RN+ GVR I+  + 
Sbjct: 5   KTLNVTSKNGPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMG-RNTQGVRLINTRED 63

Query: 733 DQVISMAIV 741
           D+V ++  V
Sbjct: 64  DEVATVTRV 72


>gi|118139688|gb|ABK63290.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139692|gb|ABK63292.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139694|gb|ABK63293.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139700|gb|ABK63296.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139702|gb|ABK63297.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A  +L DL KDTV
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|307101850|gb|EFN50438.1| hypothetical protein CHLNCDRAFT_55891 [Chlorella variabilis]
          Length = 154

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 2/121 (1%)

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           ++G  ++++D + ++  V+ H  +LFF++ G  Y  + + +P G+  A G A+  +L  +
Sbjct: 1   KAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFD 60

Query: 626 QGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +  RI  ++P     ++  +    VV  T+ G ++R  L  F  INRSG +AM +    E
Sbjct: 61  KSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRVPQE 120

Query: 684 I 684
           +
Sbjct: 121 L 121



 Score = 42.2 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND------ 849
               +L  + +G      +YD     R+  G   T V   ++   + A+ PV+       
Sbjct: 20  DHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALG 79

Query: 850 --NDQIILVSDKGTLIRVPVNE---IRIASRATKGVVI 882
                +++++ KG + R  + +   I  +     GV +
Sbjct: 80  SAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRV 117


>gi|118139696|gb|ABK63294.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A   L DL KDTV
Sbjct: 61  DNAAAMRYTEVRMTRIAEEALRDLDKDTV 89


>gi|89243025|gb|ABD64768.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 93

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/101 (48%), Positives = 62/101 (61%), Gaps = 9/101 (8%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A  VIL RAIP + DGLKPV RRIL  +  M    + K  K A ++G+ M  YHPHG+A 
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
           I +AL  M    + R  L++ QGNFG++  GDP AA RY E
Sbjct: 57  ITEALVNM----ANRGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|321473415|gb|EFX84382.1| hypothetical protein DAPPUDRAFT_3936 [Daphnia pulex]
          Length = 269

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 91/274 (33%), Gaps = 27/274 (9%)

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
               EP       P VLVNG  GI  G  T IP  N  E+++    +++           
Sbjct: 9   NQSIEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIENLKRMLNGEK-------- 60

Query: 219 IIRGPDFPTGAVILGRTGIKNAYAT-GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
               P  P      G     + +     G + +   + IE          +TE+P  V  
Sbjct: 61  --PNPMDPWFKGYRGTVERIDQFNFVISGELAVLSPTTIE----------ITELPVDVPT 108

Query: 278 AAMLEKIAELVREK---RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
               + + E +          I D ++       R V+ +       V     +R   LQ
Sbjct: 109 ENYKKSVLEKLLCGSEECPPIITDYQEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKLQ 168

Query: 335 SLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           S++S+  + L   NG      ++  I+  F   R E+  +R  Y   K       LV   
Sbjct: 169 SVYSLRSMLLYDSNGSLKTYNSVDDIMNEFYEVRLELYRKRRDYFSGKVEALRARLVNQN 228

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +  +   V I+      +    EL +R++   
Sbjct: 229 NFLTEISSKVLIVDSEKKFDVLLEELRRRNYAPD 262


>gi|24020904|gb|AAN40847.1| GyrA [Streptococcus mitis]
          Length = 75

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 59/75 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKA 138
             AA+RYTE R+ K 
Sbjct: 61  GAAAQRYTEARMSKI 75


>gi|104640687|gb|ABF73000.1| plastid DNA gyrase subunit A protein precursor [Karenia brevis]
          Length = 292

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 92/242 (38%), Gaps = 7/242 (2%)

Query: 548 VKRVPLSVYRAQRRGGK--GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           +KR+  S  + Q +  K  G+    M   D + +L+       +L FS  G V       
Sbjct: 50  MKRLRASELKEQLKNKKPSGKPCFGMMPGDSLMNLYCCHDDDKLLAFSEDGRVLMMNALA 109

Query: 606 LPIGSP-QARGKALINILS-LNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKL 662
           +P      A+G AL  +L  L +G ++T ++  P+     + + ++V  T  G  ++  +
Sbjct: 110 VPPPRLISAQGSALSELLPALGEGHKVTALVVMPDFNFDDYEDEFLVLVTGCGIAKKVLI 169

Query: 663 SDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            +  ++        M+LD  DE+           ++  T+ G  +R  +      +    
Sbjct: 170 KELGRLRPGKSLQCMRLDEGDELRWAHRARGNFALVCATEKGHVLRCSLGPQWRCSSLKV 229

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV  + L  GD + S+A+   +  + + R       S        +  E     ND   
Sbjct: 230 GGVAALRLR-GDCLTSVAVHEMSTEEAEAREHSGAMSSTAAGSSDANPHEAERGDNDGED 288

Query: 782 EG 783
           + 
Sbjct: 289 DS 290


>gi|118139704|gb|ABK63298.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 65/88 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD
Sbjct: 2   RITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTV 151
             AA RYTE R+ + A  +L DL KDTV
Sbjct: 62  NAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|24020910|gb|AAN40850.1| GyrA [Streptococcus mitis]
          Length = 76

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 59/75 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKA 138
             AA+RYTE R+ K 
Sbjct: 61  GAAAQRYTEARMSKI 75


>gi|224533041|ref|ZP_03673647.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512035|gb|EEF82430.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 114

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 8/101 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           G  M KYHPHG+ +IY+AL  +    + + L IE QGNFG+
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNI----ANKDLFIEKQGNFGN 93


>gi|40781641|gb|AAR89826.1| gyrase [Enterococcus gallinarum]
          Length = 80

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 63/80 (78%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGS 160
            +L D+ KDTVDF+ NYD +
Sbjct: 61  EMLRDINKDTVDFQSNYDDT 80


>gi|37911071|gb|AAR04870.1| gyrase A [Campylobacter jejuni]
          Length = 77

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 56/77 (72%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M     +    +VK ARI G V+G+YHPHG+AA+YDAL RMAQD+S+R   I GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQ 60

Query: 115 GNFGSVDGDPPAAERYT 131
           GNFGS+DGD  AA RYT
Sbjct: 61  GNFGSIDGDSAAAMRYT 77


>gi|261599209|gb|ACX85667.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 70/105 (66%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                 ++K Y K A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+
Sbjct: 2   HDTKHTFDKSYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSM 61

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           DGDPPAA RYTE RL + A +LL D+ K TV F  N+D + +EP 
Sbjct: 62  DGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPT 106


>gi|329124307|gb|AEB72031.1| DNA topoisomerase IV subunit C [Aeromonas sp. 58(2011)]
          Length = 84

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
             RRI++ M ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L+
Sbjct: 3   GQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLV 62

Query: 112 EGQGNFGSVDGDPPAAERYTEC 133
           +GQGN+G+ D DP +       
Sbjct: 63  DGQGNWGAPD-DPKSFAAMRFT 83


>gi|24020908|gb|AAN40849.1| GyrA [Streptococcus salivarius]
          Length = 76

 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 59/75 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKA 138
             AA+RYTE R+ K 
Sbjct: 61  GAAAQRYTEARMSKI 75


>gi|24020912|gb|AAN40851.1| GyrA [Streptococcus mitis]
          Length = 74

 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD 
Sbjct: 1   VTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDG 60

Query: 125 PAAERYTECRLQKA 138
            AA+RYTE R+ K 
Sbjct: 61  AAAQRYTEARMSKI 74


>gi|304368196|gb|ADM26747.1| ParC [Acinetobacter baumannii]
          Length = 98

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDYACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
            D     AA RYTE +L   +  LL +LG+ T +++ N
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDN 98


>gi|237511975|gb|ACQ99700.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 77

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 52/77 (67%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA 
Sbjct: 1   RSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAM 60

Query: 129 RYTECRLQKAAHFLLDD 145
           RYTE RL   A  +L +
Sbjct: 61  RYTEARLTPLAMEMLRE 77


>gi|153840090|ref|ZP_01992757.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746310|gb|EDM57375.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 169

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 32/187 (17%)

Query: 295 DIADLRDESDRQGYRVVIELKRGA--SADVILNQLYRYTSLQSLFSVNMVALN-GYKPER 351
            + DLRDESD +    ++ + R      D+++N L+  T L+  + VN+  +    +P+ 
Sbjct: 1   MVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQV 60

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L+ IL  ++ FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P+
Sbjct: 61  KGLVQILSEWIEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPK 120

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
                LM+R                            ++++Q  AIL+ +L  L  L   
Sbjct: 121 AV---LMER--------------------------FGITDIQADAILDTKLRHLAKLEEM 151

Query: 472 DIRNELN 478
            IR E +
Sbjct: 152 KIRGEQD 158


>gi|291163431|gb|ADD80742.1| ParC [Francisella endosymbiont of Dermacentor andersoni]
          Length = 168

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/169 (31%), Positives = 92/169 (54%), Gaps = 7/169 (4%)

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I  ++
Sbjct: 4   YXSGXGSIRQQAVYEYDXHGN----VVITKLPHQVSXAAVMEQIANELKQQKITWIKXIQ 59

Query: 301 DESDRQGYRVVIEL--KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           DESD +    ++        +   I+  L   T  +  F VNM  +    +P+   L+ I
Sbjct: 60  DESDDKEPVKIVLYSATTKKNIKKIMGHLLATTDXEKNFRVNMNMIGLDNRPQVKNLLDI 119

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           L  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR 
Sbjct: 120 LNQWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRN 168


>gi|145629329|ref|ZP_01785128.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978832|gb|EDJ88555.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 80

 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 3   ERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 62

Query: 896 RIRES 900
           R+ ++
Sbjct: 63  RVCDA 67



 Score = 41.4 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           ++++     + + I+L T  G  VR  +S + +   RN+ GVR I  A  + V+S+  V 
Sbjct: 7   KVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVG-RNTQGVRLIRTADDEHVVSLERVC 65

Query: 743 HA 744
            A
Sbjct: 66  DA 67


>gi|270676214|ref|ZP_06222680.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
 gi|270316446|gb|EFA28324.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
          Length = 76

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 44/68 (64%)

Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
          +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7  EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66

Query: 74 CARISGEV 81
           AR  G+V
Sbjct: 67 SARTVGDV 74


>gi|261599207|gb|ACX85666.1| ParC [Streptococcus pneumoniae]
          Length = 101

 Score = 91.5 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 50/99 (50%), Positives = 67/99 (67%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA R
Sbjct: 2   SYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMR 61

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           YTE RL + A +LL D+ K TV F  N+D + +EP    
Sbjct: 62  YTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTACQ 100


>gi|3510609|gb|AAC33554.1| topoisomerase IV subunit A [Chlamydia trachomatis]
          Length = 97

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 8/101 (7%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             M   HPHG+A I +AL  +    + +  LIE QGNFG+ 
Sbjct: 60  RTMA-LHPHGDAPIVEALVVL----ANKRFLIETQGNFGNP 95


>gi|312192217|gb|ADQ43805.1| DNA gyrase subunit A [Aerococcus sanguinicola]
          Length = 68

 Score = 91.1 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 56/67 (83%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+GM ++GV  +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G 
Sbjct: 1   RILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGH 60

Query: 115 GNFGSVD 121
           GNFGS+D
Sbjct: 61  GNFGSID 67


>gi|3023910|sp|P72065|GYRA_MYCXE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mxe
           gyrA intein
 gi|1907313|gb|AAB81424.1| gyrase subunit A precursor [Mycobacterium xenopi]
          Length = 327

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + K AR   E MG YHPHG+A+IYD L RMAQ WS+R  L++GQGNFGS   DPP
Sbjct: 1   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPP 60

Query: 126 AAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDG 159
           AA RY      L          +       RPN D 
Sbjct: 61  AAMRYCITGDALVALPEGESVRIADIVPGARPNSDN 96



 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 47/65 (72%)

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            TE  L   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 263 NTEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 322

Query: 190 IPTHN 194
           IP HN
Sbjct: 323 IPPHN 327


>gi|11359849|gb|AAG34730.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 90

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AA 127
            K+ K  R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+ + D       
Sbjct: 1   AKFKKSDRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWRAPDDPKSFVV 60

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RYTE RL K A  LL +LG+ TVD+ PN+
Sbjct: 61  IRYTESRLSKYAEVLLGELGQVTVDWVPNF 90


>gi|60651678|gb|AAX32850.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score = 90.8 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 55/69 (79%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRLQKA 138
           YTE   +  
Sbjct: 61  YTEAHTKPF 69


>gi|66347012|emb|CAI94714.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Fischerkietz]
 gi|66347014|emb|CAI94715.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 87

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP-AAERYTECRLQKAAH 140
           G+ D     AA RYTE RL K A 
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAE 84


>gi|118139690|gb|ABK63291.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R  + A  +L DL KDTV
Sbjct: 61  DNAAAMRYTEVRTTRIAEEVLRDLDKDTV 89


>gi|45550206|gb|AAS67881.1| ParC [Salmonella enterica subsp. enterica serovar Reading]
 gi|324331535|gb|ADY38650.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B]
 gi|324331539|gb|ADY38652.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP-AAERYTECRLQKAAH 140
           G+ D     AA RYTE RL K A 
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAE 84


>gi|901985|gb|AAB60062.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 69

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 55/68 (80%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 1   YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 60

Query: 131 TECRLQKA 138
           TE RL K 
Sbjct: 61  TEIRLAKI 68


>gi|8248385|gb|AAF74174.1|AF246755_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 56/70 (80%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYGAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKA 138
           RYTE R+ K 
Sbjct: 61  RYTEARMSKI 70


>gi|294626547|ref|ZP_06705145.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599114|gb|EFF43253.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 260

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 75/211 (35%), Gaps = 18/211 (8%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
               +++ + +  E M V +S  G+V        RA +      +G+  RD D +     
Sbjct: 5   AAQAIDETEMVASEPMTVVLSQKGWV--------RAAKGHEVDPAGMSYRDGDGLLTAVR 56

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             +   V F  S G  Y   V  LP  S +  G+ L    S   G     +       S+
Sbjct: 57  SRSTHQVAFLDSDGRAYSTAVHTLP--SARGNGEPLTGRFSPASGAAFQVM------ASA 108

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTT 700
            N    V A+ HG     +  +    N++GK  + L +   +L+       Q + I+  T
Sbjct: 109 DNATRFVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVT 168

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             G  +  P + +          +  I  AK
Sbjct: 169 SAGNLLAVPATDVPELDKGKGNKIIEIPKAK 199


>gi|317498959|ref|ZP_07957242.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893792|gb|EFV15991.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 93/204 (45%), Gaps = 22/204 (10%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +   GY K +  + Y+  +         ++++  F+           +  F++LG +++ 
Sbjct: 1   MDRFGYSKTMDKATYQRNKE-------NILKEYKFIV---PCMNTDKICIFTNLGVMHQI 50

Query: 602 KVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P G  + +G  + N+ + +   E I  ++    D  S  +  ++FAT    ++  
Sbjct: 51  KVLDIPAGKFRDKGVPIDNLCNYDSTKEYIIQVL----DAESMIHSSLLFATAKSMLKVM 106

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISAIRVF 716
              + +   +    A KL   DE++ V         E+ ++L TK G  ++F +S I   
Sbjct: 107 D-GELLNAAKRTVQATKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEI-PK 163

Query: 717 AGRNSVGVRGISLAKGDQVISMAI 740
             ++++GVRG+ L+K D + ++ +
Sbjct: 164 KKKSALGVRGMKLSKDDSLTNIYV 187



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            +    +L  + K   K         + R    ++AT +S+   I  +   +     D++
Sbjct: 88  SMIHSSLLFATAKSMLKVMDGELLNAAKR---TVQATKLSEDELIEVIPIDWMEGSEDKV 144

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +L + +G  ++  ++EI    ++  GV     +KD+ + ++
Sbjct: 145 VLQTKEGVFLKFLLSEIPKKKKSALGVRGMKLSKDDSLTNI 185


>gi|166156947|gb|ABY83102.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156949|gb|ABY83103.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQG 60

Query: 116 NFGSVDGDPPAAERY 130
           NFGS+DGD  AA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|118139708|gb|ABK63300.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ +++DAL RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 9   YKKSARIVGDVIGKYHPHGDTSVHDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R+ + A  +L DL KDTV
Sbjct: 69  TEARMTRIAEEVLRDLDKDTV 89


>gi|324331537|gb|ADY38651.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDNACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP-AAERYTECRLQKAAH 140
           G+ D     AA RYTE RL K A 
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYAE 84


>gi|2501244|sp|Q49166|GYRA_MYCFV RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mfl
           gyrA intein
 gi|1122290|emb|CAA92433.1| DNA gyrase subunit A [Mycobacterium flavescens]
          Length = 554

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 46/68 (67%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 5   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 64

Query: 126 AAERYTEC 133
           AA RY   
Sbjct: 65  AAMRYCVT 72



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 119 SVDGDPPAAERY------TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            VD D  +          TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+P
Sbjct: 473 RVDTDDHSFITNGFVSHNTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFP 532

Query: 173 NVLVNGGGGIAVGMATNIPTHN 194
           N+L NG GGIAVGMATNIP HN
Sbjct: 533 NLLANGSGGIAVGMATNIPPHN 554


>gi|33578059|gb|AAQ22353.1| ParC [Salmonella enterica subsp. enterica serovar Stanley]
          Length = 83

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP-AAERYTECRLQKA 138
           G+ D     AA RYTE RL K 
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKY 82


>gi|18104622|gb|AAL59622.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTAGLETIEDE 112


>gi|161598231|gb|ABX74936.1| topoisomerase IV [Ureaplasma urealyticum]
          Length = 89

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 61/88 (69%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  
Sbjct: 2   FHDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNA 61

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDF 153
           AA RYTE RL K A  +L +L KD V F
Sbjct: 62  AAMRYTETRLSKIASVMLTNLKKDVVKF 89


>gi|1515475|gb|AAB06960.1| gyrase A [Enterococcus faecalis]
          Length = 73

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDG
Sbjct: 1   LGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDG 60

Query: 123 DPPAAERYTECRL 135
           D  AA RYTE R+
Sbjct: 61  DGAAAMRYTEARM 73


>gi|8248357|gb|AAF74160.1|AF246741_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248359|gb|AAF74161.1|AF246742_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248361|gb|AAF74162.1|AF246743_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248363|gb|AAF74163.1|AF246744_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248365|gb|AAF74164.1|AF246745_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248369|gb|AAF74166.1|AF246747_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248371|gb|AAF74167.1|AF246748_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248373|gb|AAF74168.1|AF246749_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248375|gb|AAF74169.1|AF246750_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248377|gb|AAF74170.1|AF246751_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248379|gb|AAF74171.1|AF246752_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248381|gb|AAF74172.1|AF246753_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248387|gb|AAF74175.1|AF246756_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248393|gb|AAF74178.1|AF246759_1 DNA gyrase subunit A [Streptococcus sanguinis]
 gi|8248395|gb|AAF74179.1|AF246760_1 DNA gyrase subunit A [Streptococcus sanguinis]
          Length = 76

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 57/70 (81%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKA 138
           RYTE R+ K 
Sbjct: 61  RYTEARMSKI 70


>gi|18104620|gb|AAL59621.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRSSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTAGLETIEDE 112


>gi|168997715|gb|ACA42555.1| topoisomerase IV [Escherichia coli]
          Length = 88

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP-AAERYTECRLQKAAH 140
           G+ D     AA RYTE RL K + 
Sbjct: 61  GAPDDPKSFAAMRYTESRLSKYSE 84


>gi|60651684|gb|AAX32853.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 55/69 (79%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRLQKA 138
           YTE   +  
Sbjct: 61  YTEAHTKPF 69


>gi|18104624|gb|AAL59623.1| GyrA [Bacillus subtilis]
 gi|18104626|gb|AAL59624.1| GyrA [Bacillus subtilis]
 gi|18104630|gb|AAL59626.1| GyrA [Bacillus subtilis]
 gi|18104632|gb|AAL59627.1| GyrA [Bacillus subtilis]
 gi|18104638|gb|AAL59630.1| GyrA [Bacillus subtilis]
 gi|18104640|gb|AAL59631.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTSGLETIEDE 112


>gi|27542585|gb|AAO16893.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 76

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 59/74 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDL 146
            RL K AH L+ DL
Sbjct: 61  IRLAKIAHELMADL 74


>gi|8248367|gb|AAF74165.1|AF246746_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 76

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 56/70 (80%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKA 138
           RYTE R+ K 
Sbjct: 61  RYTEARMSKI 70


>gi|60101260|gb|AAX13708.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|9081887|gb|AAF82626.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 80

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILYAMYSSGNTFDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|237511971|gb|ACQ99698.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 50/72 (69%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   E MG YHPHG+A+IY+ L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 1   SARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 134 RLQKAAHFLLDD 145
           RL   A  +L +
Sbjct: 61  RLTPLAMEMLRE 72


>gi|2501245|sp|Q49467|GYRA_MYCGO RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mgo
           gyrA intein
 gi|1122292|emb|CAA92432.1| DNA gyrase subunit A [Mycobacterium gordonae]
          Length = 550

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 46/68 (67%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 2   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 61

Query: 126 AAERYTEC 133
           AA RY   
Sbjct: 62  AAMRYCLT 69



 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 48/65 (73%)

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 486 NTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 545

Query: 190 IPTHN 194
           IP HN
Sbjct: 546 IPPHN 550


>gi|166156951|gb|ABY83104.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156953|gb|ABY83105.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156955|gb|ABY83106.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156957|gb|ABY83107.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156959|gb|ABY83108.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156961|gb|ABY83109.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156963|gb|ABY83110.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156965|gb|ABY83111.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQG 60

Query: 116 NFGSVDGDPPAAERY 130
           NFGS+DGD  AA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|237511977|gb|ACQ99701.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 1   SARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 134 RLQKAAHFLLDD 145
           RL   A  +L +
Sbjct: 61  RLTPLAMEMLRE 72


>gi|18104634|gb|AAL59628.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTAGLETIEDE 112


>gi|319444109|gb|ADV58132.1| ParC [Acinetobacter baumannii]
          Length = 93

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-A 126
           + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D     A
Sbjct: 3   SGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFA 62

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           A RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 63  AMRYTEAKLSAYSELLLSELGQGTSEWQDNF 93


>gi|18104628|gb|AAL59625.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL+ +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELMEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTSGLETIEDE 112


>gi|60101274|gb|AAX13715.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 52/61 (85%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG++++Y+A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYTE
Sbjct: 3   KSARIVGDVLGKYHPHGDSSVYNAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTE 62

Query: 133 C 133
            
Sbjct: 63  A 63


>gi|60651690|gb|AAX32856.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 52/66 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYTE
Sbjct: 3   KSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTE 62

Query: 133 CRLQKA 138
              +  
Sbjct: 63  AHTKPF 68


>gi|8248383|gb|AAF74173.1|AF246754_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248389|gb|AAF74176.1|AF246757_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248391|gb|AAF74177.1|AF246758_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/70 (61%), Positives = 56/70 (80%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKA 138
           RYTE R+ K 
Sbjct: 61  RYTEARMSKI 70


>gi|23428783|gb|AAM21722.1| topoisomerase II subunit A [Legionella pneumophila]
          Length = 78

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 61/75 (81%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE R+ 
Sbjct: 4   IVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRMS 63

Query: 137 KAAHFLLDDLGKDTV 151
           K AH LL DL K+TV
Sbjct: 64  KVAHALLADLEKETV 78


>gi|18104636|gb|AAL59629.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  +L   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQTLVKLIAELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTSGLETIEDE 112


>gi|18104642|gb|AAL59632.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRIVEGLLDMEDED 531
            RRT IV   L+  +++
Sbjct: 96  ERRTEIVTSGLETIEDE 112


>gi|9081881|gb|AAF82623.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 80

 Score = 88.4 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|9081883|gb|AAF82624.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 80

 Score = 88.4 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|60651682|gb|AAX32852.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 53/61 (86%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|60101262|gb|AAX13709.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECR 134
           YTE  
Sbjct: 61  YTEAH 65


>gi|237511973|gb|ACQ99699.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 1   SARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 134 RLQKAAHFLLDD 145
           RL   A  +L +
Sbjct: 61  RLTPLAMEMLRE 72


>gi|60651694|gb|AAX32858.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+  +YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRPVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRL 135
           YTE ++
Sbjct: 61  YTEAQI 66


>gi|11558104|emb|CAC17731.1| GyrA protein [Mycobacterium gastri]
          Length = 550

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 46/66 (69%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA
Sbjct: 1   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 60

Query: 128 ERYTEC 133
            RY   
Sbjct: 61  MRYCTT 66



 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 54/85 (63%), Gaps = 6/85 (7%)

Query: 119 SVDGDPPAAERY------TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            VD D  A          TE RL   A  ++ ++ ++TVDF PNYDG  QEP VL +R+P
Sbjct: 466 RVDTDDHAFLTNGFVSHNTEARLTPLAMEIVREIDEETVDFIPNYDGRVQEPTVLPSRFP 525

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGE 197
           N+L NG GGIAVGMATNIP HN GE
Sbjct: 526 NLLANGSGGIAVGMATNIPPHNKGE 550


>gi|60651686|gb|AAX32854.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/65 (67%), Positives = 54/65 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECR 134
           YTE  
Sbjct: 61  YTEAH 65


>gi|60101272|gb|AAX13714.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|60651696|gb|AAX32859.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 51/61 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|60651692|gb|AAX32857.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|9081885|gb|AAF82625.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 80

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 59/80 (73%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  + K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMYSSGNTFEKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|60101266|gb|AAX13711.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|2780355|dbj|BAA24278.1| GyrA subunit of Enterobacter cloacae DNA gyrase
          Length = 65

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAA 127
           D  AA
Sbjct: 61  DSAAA 65


>gi|60651688|gb|AAX32855.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K +RI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSSRIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRL 135
           YTE  L
Sbjct: 61  YTEAHL 66


>gi|60101268|gb|AAX13712.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 52/64 (81%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KIFKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|60101270|gb|AAX13713.1| GyrA [Riemerella anatipestifer]
 gi|60651672|gb|AAX32847.1| GyrA [Riemerella anatipestifer]
          Length = 61

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/58 (67%), Positives = 49/58 (84%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           K ARI G+V+GKYHPHG++++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 3   KSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60


>gi|60101264|gb|AAX13710.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|4928201|gb|AAD33461.1|AF129762_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 56/68 (82%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 131 TECRLQKA 138
           TE R+ K 
Sbjct: 61  TEARMSKI 68


>gi|60101276|gb|AAX13716.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 2   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 61

Query: 130 YTEC 133
           YTE 
Sbjct: 62  YTEA 65


>gi|60651680|gb|AAX32851.1| GyrA [Riemerella anatipestifer]
 gi|60651698|gb|AAX32860.1| GyrA [Riemerella anatipestifer]
 gi|60651700|gb|AAX32861.1| GyrA [Riemerella anatipestifer]
 gi|60651702|gb|AAX32862.1| GyrA [Riemerella anatipestifer]
 gi|60651704|gb|AAX32863.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|2598663|dbj|BAA23307.1| CfgyrA [Citrobacter freundii]
          Length = 65

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 53/65 (81%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAA 127
           D  AA
Sbjct: 61  DSAAA 65


>gi|312192213|gb|ADQ43803.1| DNA gyrase subunit A [Aerococcus urinae]
          Length = 64

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+GM ++GV  +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G G
Sbjct: 1   ILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHG 60

Query: 116 NFGS 119
           NFGS
Sbjct: 61  NFGS 64


>gi|60651676|gb|AAX32849.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|24020906|gb|AAN40848.1| GyrA [Streptococcus mitis]
          Length = 67

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 54/67 (80%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 1   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 60

Query: 132 ECRLQKA 138
           E R+ K 
Sbjct: 61  EARMSKI 67


>gi|121883|sp|P21557|GYRA_HALSQ RecName: Full=DNA gyrase subunit A
 gi|149025|gb|AAB09606.1| DNA gyrase subunit A [Haloferax lucentense]
          Length = 82

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 46/65 (70%)

Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV  N  + K 
Sbjct: 18 EVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKS 77

Query: 75 ARISG 79
          + I G
Sbjct: 78 SSIVG 82


>gi|4928203|gb|AAD33462.1|AF129763_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 55/68 (80%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 131 TECRLQKA 138
           TE R+ K 
Sbjct: 61  TEARMSKI 68


>gi|2501246|sp|Q49608|GYRA_MYCKA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mka
           gyrA intein
 gi|1122294|emb|CAA92431.1| DNA gyrase subunit A [Mycobacterium kansasii]
          Length = 549

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              + + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS    PP
Sbjct: 1   RPARSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNVPP 60

Query: 126 AAERYTEC--RLQKAAHFLLDDLGKDTVDFRPNYDG 159
           AA RY      L +        +       RPN D 
Sbjct: 61  AAMRYCVTGDALVRLPFGQSMRIADVVPGARPNSDN 96



 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 119 SVDGDPPAAERY------TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            VD D  A          TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+P
Sbjct: 468 RVDTDDHAFLTNGFVSHNTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFP 527

Query: 173 NVLVNGGGGIAVGMATNIPTHN 194
           N+L NG GGIAVGMATNIP HN
Sbjct: 528 NLLANGSGGIAVGMATNIPPHN 549


>gi|1212749|emb|CAA65085.1| Topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDT 150
            D     AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|60651674|gb|AAX32848.1| GyrA [Riemerella anatipestifer]
          Length = 60

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 2   KSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 59


>gi|49425335|gb|AAT66028.1| gyrase subunit A [Corynebacterium amycolatum]
 gi|49425339|gb|AAT66030.1| gyrase subunit A [Corynebacterium glutamicum]
          Length = 70

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 136 QKAA 139
            K  
Sbjct: 61  TKIT 64


>gi|403953|gb|AAB01009.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 98

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++VIR    IE+   
Sbjct: 2   LIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVEIEQLQT 61

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD
Sbjct: 62  -RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIAD 97


>gi|82502212|gb|ABB80134.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 94

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           ++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D   
Sbjct: 1   LKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPK 60

Query: 125 P-AAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             AA RYTE +L   +  LL +LG+ T +++
Sbjct: 61  SFAAMRYTEAKLSAYSELLLSELGQGTSEWQ 91


>gi|289803041|ref|ZP_06533670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 92

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 44/64 (68%)

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 1   VQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 60

Query: 905 EAES 908
           E ++
Sbjct: 61  ELDA 64


>gi|284192199|gb|ADB82819.1| topoisomerase IV subunit A [Coxiella burnetii]
          Length = 76

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G++   KY K AR  G V+GK+HPHG+ A Y+A+  MAQ +S R   ++
Sbjct: 1   QRRIVYAMSELGLKSTAKYKKSARTVGNVLGKFHPHGDIACYEAMVLMAQPFSFRYPFVD 60

Query: 113 GQGNFGSVDGDP 124
           GQ N+GS D   
Sbjct: 61  GQSNWGSADDPK 72


>gi|284027749|gb|ADB66700.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 90

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 57/85 (67%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L  M  +G +WN+ Y K A + G V+GK+HPH + A Y    RMAQ  SLR +L+EGQG
Sbjct: 2   VLCAMNVLGKDWNEAYKKSALVVGNVIGKFHPHADFAGYYTNVRMAQPSSLRYMLVEGQG 61

Query: 116 NFGSVDGDPPAAERYTECRLQKAAH 140
            +G++DGD  AA R++E RL + AH
Sbjct: 62  TYGTIDGDSAAAMRFSEIRLARIAH 86


>gi|197725599|gb|ACH73008.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDT 150
            D     AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|4545087|gb|AAD22387.1| DNA gyrase A [Serratia marcescens]
          Length = 60

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|52352239|gb|AAU43281.1| DNA topoisomerase [Acinetobacter baumannii]
          Length = 92

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+ S
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLIEGQGNWAS 60

Query: 120 VDGDPP-AAERYTECRLQKAAHFLLDDLGKDT 150
            D     AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PDDPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|122893197|gb|ABM67555.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893205|gb|ABM67559.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 61/79 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 1   IGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 142 LLDDLGKDTVDFRPNYDGS 160
           +L D+ KDTVDF PNYD +
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|46203585|ref|ZP_00051310.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 66

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 1  MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
          MT+  ++ D      I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1  MTQPAVTGD------IRDTPLADALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61 MQMGVEWNKKYV 72
           Q+ ++ +  + 
Sbjct: 55 RQLKLDPSGGFR 66


>gi|296427790|gb|ADH16507.1| topoisomerase IV subunit A [Shigella flexneri 2a]
          Length = 83

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP-AAERYTECRLQKAAH 140
                AA RYTE RL K + 
Sbjct: 62  DPKSFAAMRYTESRLSKYSE 81


>gi|284027743|gb|ADB66698.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 81

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/80 (50%), Positives = 54/80 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
            + M     EWN+   K AR+ G+V+GKY+PHG+ A+YD +  MAQ +S R +L++GQGN
Sbjct: 2   FYAMNIKANEWNEAKEKSARVVGDVIGKYNPHGDFAVYDNIVLMAQPFSQRYMLVDGQGN 61

Query: 117 FGSVDGDPPAAERYTECRLQ 136
           FG +DGD  AA R TE RL 
Sbjct: 62  FGCIDGDSAAAVRKTELRLA 81


>gi|49425331|gb|AAT66026.1| gyrase subunit A [Corynebacterium jeikeium]
          Length = 70

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/64 (64%), Positives = 51/64 (79%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RIIGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 136 QKAA 139
            K  
Sbjct: 61  TKIT 64


>gi|4545077|gb|AAD22382.1| DNA gyrase A [Escherichia coli]
 gi|4545079|gb|AAD22383.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 60

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|327342921|dbj|BAK09294.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 78

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K  ++V+ 
Sbjct: 5   TEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTF 64

Query: 895 ERIRESEIVDEAES 908
             +      +E E 
Sbjct: 65  TSVAADSEKEEDEE 78


>gi|253568270|ref|ZP_04845681.1| DNA gyrase [Bacteroides sp. 1_1_6]
 gi|251842343|gb|EES70423.1| DNA gyrase [Bacteroides sp. 1_1_6]
          Length = 113

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVS 893
             + G LV +  V D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ S
Sbjct: 4   TEKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGS 63

Query: 894 VERIRESEIVDEAESTE 910
           V ++    + DE  + E
Sbjct: 64  VCKVMTESLEDEVPAEE 80



 Score = 38.4 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +++++++ T END+++  K G  +R  ++ +R+   R + GVR I+L K +  I     +
Sbjct: 9   KLVTIKSVTDENDLMIINKSGITIRLKVADVRIMG-RATQGVRLINLEKRNDQIGSVCKV 67

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             ++  DE        +    L +    +      D
Sbjct: 68  MTESLEDEVPAEEAEGTIVSDLTTDQDVDNADTATD 103


>gi|327342918|dbj|BAK09292.1| DNA gyrase subunit A [Streptococcus anginosus SK52]
          Length = 79

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K
Sbjct: 1   KTANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDK 58

Query: 888 DERVVSVERIRESEIVDEAES 908
             ++V+   +      +E E 
Sbjct: 59  GAQIVTFTSVAADSEKEEDEE 79



 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K A   +    +  +     + D+++ T  G  +R  ++ I    GR ++GV+ + L KG
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQ-TGRATLGVKVMRLDKG 59

Query: 733 DQVISMAIVLHADADYDERI 752
            Q+++   V       ++  
Sbjct: 60  AQIVTFTSVAADSEKEEDEE 79


>gi|4545081|gb|AAD22384.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 60

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|1017803|gb|AAA79196.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 63

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA
Sbjct: 1   DKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAA 60

Query: 128 ERY 130
           +RY
Sbjct: 61  QRY 63


>gi|313600330|gb|ADR71661.1| topoisomerase IV subunit [Salmonella sp. ES-B43]
          Length = 83

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHP G+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPRGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP-AAERYTECRLQKAAH 140
                AA RYTE RL K + 
Sbjct: 62  DPKSFAAMRYTESRLSKYSE 81


>gi|122893195|gb|ABM67554.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893203|gb|ABM67558.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 1   IGQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 142 LLDDLGKDTVDFRPNYDGS 160
           +L D+ KDTVDF PNYD +
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|33322733|gb|AAQ07101.1|AF496413_1 topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 122

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 26/148 (17%)

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV +RT++ 
Sbjct: 1   DADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVVTKRTQFD 60

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+                  
Sbjct: 61  LKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE---------------- 104

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLAR 464
                        +  Q  AI+ L+L R
Sbjct: 105 ----------FAFTXRQAEAIVSLQLYR 122


>gi|315613998|gb|ADU52599.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614000|gb|ADU52600.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614002|gb|ADU52601.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614004|gb|ADU52602.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 68

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 53/66 (80%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 3   YKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRY 62

Query: 131 TECRLQ 136
           TE R+ 
Sbjct: 63  TEIRMA 68


>gi|5456787|gb|AAD43659.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456788|gb|AAD43660.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 82.7 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|148645148|gb|ABR01098.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 16/141 (11%)

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +  ++L +GD++IS+A+        D R   +      + +   + +  T  +    V G
Sbjct: 1   IIAVNLDEGDKLISVALT-------DGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRG 53

Query: 784 NISEERCQELKLK-------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + E+    + +        +  + TV+E G+GKRT   ++R   R GKGI     ++ N
Sbjct: 54  MMLEDDDVVIGMAILNEHFTDSTLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERN 113

Query: 837 EIGALVAVFPVNDNDQIILVS 857
             G +V +  VND++ ++L++
Sbjct: 114 --GCVVDIKQVNDDNDLMLIT 132



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I A ++ + ++   L++V   +    ++L S  G  IR    ++R   R ++GV      
Sbjct: 1   IIAVNLDEGDK---LISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMMLE 57

Query: 887 KDERVVSVERIRE 899
            D+ V+ +  + E
Sbjct: 58  DDDVVIGMAILNE 70



 Score = 45.7 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            L    Q +L  S+ G   R    D R   R  +G+R   +   + +  +  +     + 
Sbjct: 16  ALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMMLEDDDVVIGMAILNEHFTDS 75

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            +  V++ G   R  + E R  +R  KG++   T + +  VV ++++ + 
Sbjct: 76  TLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVVDIKQVNDD 125


>gi|84500794|ref|ZP_00999029.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84390861|gb|EAQ03279.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 122

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 5/123 (4%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF  R+SVGVRG+ L + D+V SM ++    A+ DER  Y+K     RR ++GD E+ 
Sbjct: 1   MRVFNSRSSVGVRGVRLNEKDEVASMFVLPTFPAESDERASYLK----MRRAMAGDVEQ- 55

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T+ + + + +  + ++R  E+   E  ILT++  G G  +SS+D+ +  R G G+ A + 
Sbjct: 56  TTDEEEGNADMPLPQDRYAEMSAAETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWEK 115

Query: 833 SKI 835
           +  
Sbjct: 116 TMR 118


>gi|5456801|gb|AAD43673.1| topoisomerase IV subunit A [Staphylococcus lugdunensis]
          Length = 82

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKPVGNVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + A  LL D+ K+TV F 
Sbjct: 61  AKLSQLAEELLRDINKETVSFV 82


>gi|164612286|gb|ABY63612.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 60/84 (71%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRP 155
           E RL + +  LL D+ K TVDF  
Sbjct: 61  EARLSQLSGELLKDIDKSTVDFVW 84


>gi|161339333|gb|ABX64407.1| DNA topoisomerase IV [Streptococcus suis]
 gi|164612282|gb|ABY63610.1| topoisomerase IV [Streptococcus suis]
 gi|164612284|gb|ABY63611.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 61/84 (72%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRP 155
           E RL + +  LL D+ K+TVDF  
Sbjct: 61  EARLSQLSGELLKDIDKNTVDFVW 84


>gi|259493813|gb|ACW82747.1| DNA topoisomerase IV subunit A [Vibrio cholerae]
          Length = 83

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 54/80 (67%), Gaps = 1/80 (1%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP-AAERYTECRLQKAAH 140
                AA RYTE +L K A 
Sbjct: 62  DPKSFAAMRYTEAKLSKFAE 81


>gi|321472241|gb|EFX83212.1| hypothetical protein DAPPUDRAFT_315938 [Daphnia pulex]
          Length = 206

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 21/195 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
             R+ P L DGLK   R++LF  +    + +    + A    E    ++  G  ++   +
Sbjct: 3   YERSTPSLIDGLKLEQRKVLFT-VLNRNDKDVNVARLALSVAEHTALHYEPG--SLMRPI 59

Query: 98  ARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S  + L+   G FG     G   A+       + K    +        +  
Sbjct: 60  MWMAQDFVGSNNVSLLIPNGQFGTRHQGGKDAASPPLISTSISKLTRLIFHPQDDPLLTH 119

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R + D    EP       P +LVNG   I +       ++N  ++ +    ++D      
Sbjct: 120 RMDGD-QSIEPEFYAPIIPLILVNGTSRIGM-------SYNPRDITENLKRMLD------ 165

Query: 214 DALMEIIRGPDFPTG 228
           D    I   P F  G
Sbjct: 166 DDEEPIPMDPWFKGG 180


>gi|129560499|dbj|BAF48800.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 44/62 (70%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R  
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYP 60

Query: 110 LI 111
            I
Sbjct: 61  SI 62


>gi|226327143|ref|ZP_03802661.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
 gi|225204361|gb|EEG86715.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
          Length = 459

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 117/355 (32%), Gaps = 48/355 (13%)

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  R  D         ++  VLF  S G  Y      +P G  +++G+ L   L+     
Sbjct: 1   MSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYTLSPNDMPSG--RSQGEPLTGKLTFPPEA 58

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
            +  ++     +        + ATK G        +    N++GK  + +  + E+L+  
Sbjct: 59  SVKYMLAGSAGQEY------LLATKEGYGTVLSYDEMETKNKTGKGLLTVSEKTELLAPL 112

Query: 689 TC-----TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAIV 741
                   +++  ++ T   + +      +     +   G R ++L K  GD +  M   
Sbjct: 113 LVDPQKKNEQHWFIIITDKTRILAISAEQLNEM-NKKGRGTRLVALGKEQGDVIEQMLFA 171

Query: 742 LHADA----------------------DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              +A                      +  +    +KH+  +   +    + +   +   
Sbjct: 172 PKDEALIFTVDGQQEVLKAEEINYFSGNAGDEPIPLKHLHPEAVTVIMSEKGLIRCQKGH 231

Query: 780 SVEGN------ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S++          +       +  Q +  +   G            S R  KG   T+  
Sbjct: 232 SIDAKSVGFKSGDDYFDAVEGMSNQPVHLIDTTGQSYTVDVDALP-SGR-SKGDALTERL 289

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           K+ +   L  V    + D+I++ SD G      V+++   S+   G  + +  ++
Sbjct: 290 KVQKGAQLRHVVMGENTDKIVMASDAGYGFICQVDDL--TSKNKAGKSLLTLPEN 342



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 110/345 (31%), Gaps = 35/345 (10%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE---DFVTDLFIVSTHTSVLFFSSLGFVY 599
           +  GY   +       + + GKG   V  + E     + D    +     +  +    + 
Sbjct: 76  TKEGYGTVLSYDEMETKNKTGKGLLTVSEKTELLAPLLVDPQKKNEQHWFIIITDKTRIL 135

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                +L   + + RG  L+  L   QG+ I  ++  P+DE+       +  T  G    
Sbjct: 136 AISAEQLNEMNKKGRGTRLVA-LGKEQGDVIEQMLFAPKDEA-------LIFTVDGQQEV 187

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            K  +              ++ DE + ++    E   ++ ++ G        +I   +  
Sbjct: 188 LKAEE--------INYFSGNAGDEPIPLKHLHPEAVTVIMSEKGLIRCQKGHSIDAKSVG 239

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              G       +G   +S   V   D         +  + + R      TE +   K   
Sbjct: 240 FKSGDDYFDAVEG---MSNQPVHLIDTTGQSYTVDVDALPSGRSKGDALTERLKVQKG-- 294

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                 ++ R   +      I+  S+ G+G      D    N++GK +        N + 
Sbjct: 295 ------AQLRHVVMGENTDKIVMASDAGYGFICQVDDLTSKNKAGKSLLTL---PENALP 345

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA--SRATKGVVI 882
                      D I++++  G ++    +E+      +  + V I
Sbjct: 346 LPPQRLNNELTDLIMIITKGGRMLIFEASELPTMVKGKGNQMVSI 390


>gi|5456789|gb|AAD43661.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|5456790|gb|AAD43662.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456791|gb|AAD43663.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456793|gb|AAD43665.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456796|gb|AAD43668.1| topoisomerase IV subunit A [Staphylococcus warneri]
          Length = 82

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|3152674|gb|AAC17115.1| topoisomerase IV subunit A [Shigella flexneri]
          Length = 79

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAE 128
           K+ K AR  G+V+GKYHPHG++A Y+ +  MAQ +S R  L++GQGN+G+ D     AA 
Sbjct: 1   KFKKSARTVGDVLGKYHPHGDSACYEPMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 60

Query: 129 RYTECRLQKAAH 140
           RYTE RL K + 
Sbjct: 61  RYTESRLSKYSE 72


>gi|116282951|gb|ABJ97451.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 69

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 49/65 (75%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL
Sbjct: 1   RVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARL 60

Query: 136 QKAAH 140
              A 
Sbjct: 61  TPIAE 65


>gi|1498005|gb|AAB06319.1| DNA gyrase A subunit [Campylobacter coli]
          Length = 60

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA R
Sbjct: 2   YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMR 60


>gi|4218208|emb|CAA09753.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 717

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 111/293 (37%), Gaps = 26/293 (8%)

Query: 241 YATGRGSIVIRGVSHI----EKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRI 293
           Y   +G+I   G +      E    DR  + +TE+P +       E++ E +    +K  
Sbjct: 4   YKNFKGTIQELGQNQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTP 63

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---PE 350
             I+D ++       + V+++     A      L++   LQ+  + N + L  +     +
Sbjct: 64  ALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTLTCNSMVLFDHMGCLKK 123

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKA-RDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
             T+  ILK F   R      R ++L+     +   +       +  +   + I   S  
Sbjct: 124 YETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSK- 182

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--------RAILELR 461
            +   + L+QR + +  +K   +  + ++    +      S   +          IL + 
Sbjct: 183 -KDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMS 241

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           L  LT    +++  + ++ G E+ +      S S L    K++L +  +ELD 
Sbjct: 242 LWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDLW---KEDLAAFVEELDK 289


>gi|5456795|gb|AAD43667.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 82

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVAFI 82


>gi|327342909|dbj|BAK09286.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 79

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%)

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K  ++V+ 
Sbjct: 6   TEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTF 65

Query: 895 ERIRESEIVDEAES 908
             +      +E E 
Sbjct: 66  TSVTADNEKEEDED 79



 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K A   +    +  +     + D+++ T  G  +R  ++ I    GR ++GV+ + L KG
Sbjct: 1   KTANITEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQ-TGRATLGVKVMRLDKG 59

Query: 733 DQVISMAIVLHADADYDERI 752
            Q+++   V   +   ++  
Sbjct: 60  AQIVTFTSVTADNEKEEDED 79


>gi|5456794|gb|AAD43666.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 82

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 60/82 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|5456783|gb|AAD43655.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456784|gb|AAD43656.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456785|gb|AAD43657.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|5456781|gb|AAD43653.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G++HPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|325668270|gb|ADZ44579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|325668272|gb|ADZ44580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|325668260|gb|ADZ44574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668262|gb|ADZ44575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 59

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|289064502|gb|ADC80573.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPH +A+IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHCDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|5456798|gb|AAD43670.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYNAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|71842516|gb|AAZ43365.1| ParC [Escherichia coli]
          Length = 73

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 1/73 (1%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             + K+ K AR  G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D    
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 -AAERYTECRLQK 137
            AA RYTE RL K
Sbjct: 61  FAAMRYTESRLSK 73


>gi|226327146|ref|ZP_03802664.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
 gi|225204364|gb|EEG86718.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
          E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3  ELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTA 62

Query: 70 KYVK 73
          K+  
Sbjct: 63 KFKN 66


>gi|5456786|gb|AAD43658.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|4691547|gb|AAD27958.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 77

 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 1/76 (1%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D
Sbjct: 2   ELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD 61

Query: 122 GDPP-AAERYTECRLQ 136
                AA RYTE +L 
Sbjct: 62  DPKSFAAMRYTEAKLS 77


>gi|325067252|ref|ZP_08125925.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 183

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERIT 631
           T     +    +   +  G +    V               A    +  ++ +   E++ 
Sbjct: 1   TSQVATTARGRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVV 60

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
            ++P      S +N  +V AT  G ++R K  D  + N      + L   D ++   T  
Sbjct: 61  GLVPV----GSADNPPIVLATAEGVIKRVKPGDEPR-NAESWEVISLSEGDRVVFAGTAA 115

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             + + L T   Q +RF  + +R   GR + G+ GISL +G +VI+ A V   
Sbjct: 116 DTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARVIAGAAVPEE 167



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 19/171 (11%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +++ + +V   +    E    +   +  R+L+  + EE                      
Sbjct: 20  RLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVG-------------LVPVG 66

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 I+  + +G  KR    D     R+ +      +S+ +    +V      D D +
Sbjct: 67  SADNPPIVLATAEGVIKRVKPGD---EPRNAESWEVISLSEGDR---VVFAGTAADTDFL 120

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            LV+    L+R    ++R   R   G+   S  +  RV++   + E  + +
Sbjct: 121 ALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELLAE 171


>gi|289064498|gb|ADC80571.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYHTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|313103856|pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103857|pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103858|pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
          Length = 276

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 24/269 (8%)

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            V ++  V     +   S+ G VY     +   GS  +           ++ E+I     
Sbjct: 25  PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL---------KSREEKIVGAFI 75

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
                       ++ ATK G V++  L++F    + G   +KL   DE++S+ +   E  
Sbjct: 76  -----REKFGNRLLLATKKGYVKKIPLAEFEYKAQ-GMPIIKLTEGDEVVSIASSVDETH 129

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ILL TK G+  RF +  +   +   + GV+GI L K D+   + I      + +  +  +
Sbjct: 130 ILLFTKKGRVARFSVREVPP-STPGARGVQGIKLEKNDETSGLRI-----WNGEPYLLVI 183

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG--KRTS 813
                 +++   +  +       + V G            +E  +L  ++ G     + +
Sbjct: 184 TAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKIN 243

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALV 842
             D  +S +         + + +EI  +V
Sbjct: 244 QKDIPLSTKKSIPRTRWKL-EDDEIIKVV 271



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 110/278 (39%), Gaps = 33/278 (11%)

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           +  I+  P  E       +   +  G V     S  +Q     K+++K      + +   
Sbjct: 26  VVNILRVPFTEG------LFLVSNRGRVYWIAGSQALQ---GSKVSLKSREEKIVGAFIR 76

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
               N +LL TK G   + P++         + G+  I L +GD+V+S+A    +  D  
Sbjct: 77  EKFGNRLLLATKKGYVKKIPLAEFEY----KAQGMPIIKLTEGDEVVSIA----SSVDET 128

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC-QELKLKEQFILTVSEKGF 808
             + + K     R  +          +    ++   ++E     +   E ++L ++ KG 
Sbjct: 129 HILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGR 188

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI--RVP 866
            K+ S  +   +NR  KG   +          LV + P+ +  ++++ +  G     ++ 
Sbjct: 189 VKKISHEEIPKTNRGVKGTEVSGTKDT-----LVDLIPIKEEVELLITTKNGKAFYDKIN 243

Query: 867 VNEIRIASRATKGVVIFSTA---KDERVVSVERIRESE 901
             +I ++++ +    I  T    +D+ ++ V  I++SE
Sbjct: 244 QKDIPLSTKKS----IPRTRWKLEDDEIIKV-VIKKSE 276



 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 543 SHLGYVKRVPLSV--YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +  GYVK++PL+   Y+AQ     G   + + + D V  +      T +L F+  G V +
Sbjct: 87  TKKGYVKKIPLAEFEYKAQ-----GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVAR 141

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V  +P  +P ARG   +  + L + +  + +  +          Y++  T  G V++ 
Sbjct: 142 FSVREVPPSTPGARG---VQGIKLEKNDETSGLRIWN------GEPYLLVITAKGRVKKI 192

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              +  + NR  K      ++D ++ +    +E ++L+TTK G+     I+   +     
Sbjct: 193 SHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLSTK 252

Query: 721 SVGVRGISLAKGDQVISMAI 740
               R     + D++I + I
Sbjct: 253 KSIPRTRWKLEDDEIIKVVI 272



 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 74/221 (33%), Gaps = 17/221 (7%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
            +  ++++        + L +  G+      S     +         +SL   ++ I  A
Sbjct: 22  EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK--------VSLKSREEKIVGA 73

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +     +       +       + I     E  +            E       + E  
Sbjct: 74  FIREKFGN----RLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETH 129

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  ++KG   R S  +   S    +G++   + K +E   L      N    +++++ K
Sbjct: 130 ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGL---RIWNGEPYLLVITAK 186

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           G + ++   EI   +R  KG  +  T   + +V +  I+E 
Sbjct: 187 GRVKKISHEEIPKTNRGVKGTEVSGTK--DTLVDLIPIKEE 225



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 14/170 (8%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
              ++      V E  ++  +  G V R  +        G +G  G+ +   D  + L I
Sbjct: 114 EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRI 173

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            +    +L  ++ G V K     +P  +   +G  +         + +  ++P  E+   
Sbjct: 174 WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-----TKDTLVDLIPIKEEVE- 227

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                ++  TK+G    +K++       + K   +       DEI+ V  
Sbjct: 228 -----LLITTKNGKAFYDKINQKDIPLSTKKSIPRTRWKLEDDEIIKVVI 272


>gi|297374170|emb|CBL88443.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|129560501|dbj|BAF48801.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|129560503|dbj|BAF48802.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 44/62 (70%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R  
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYP 60

Query: 110 LI 111
            I
Sbjct: 61  SI 62


>gi|224539990|ref|ZP_03680529.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518395|gb|EEF87500.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 42/50 (84%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
          E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM
Sbjct: 3  EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMM 52


>gi|5456797|gb|AAD43669.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|114228539|gb|ABI58274.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 77

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             + K+ K  R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D    
Sbjct: 1   NASAKFKKSCRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 60

Query: 126 -AAERYTECRLQKAAH 140
            AA RYTE RL K + 
Sbjct: 61  FAAMRYTESRLSKYSE 76


>gi|260941163|ref|XP_002614748.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
 gi|238851934|gb|EEQ41398.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
          Length = 134

 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 105 SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           S  L L++  G FG+    G   +A RY   +L +    + + L     ++  + D S  
Sbjct: 5   SNNLNLLKPNGGFGTRAAGGKDFSAPRYIFTQLNEITRKVFNPLDDPLYNYLQD-DESTV 63

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP       P +LVNG  GI  G +TNIP+ N  ++V     +++    DL+ +    RG
Sbjct: 64  EPEWYLPVIPMLLVNGAEGIGTGWSTNIPSFNPADIVANIRRLME--GGDLEEMYPWFRG 121

Query: 223 PD 224
            +
Sbjct: 122 WE 123


>gi|297374166|emb|CBL88441.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|60101258|gb|AAX13707.1| GyrA [Riemerella anatipestifer]
          Length = 57

 Score = 80.7 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYTE 
Sbjct: 1   VGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 56


>gi|325515305|gb|ADZ24286.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668268|gb|ADZ44578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|327342912|dbj|BAK09288.1| DNA gyrase subunit A [Streptococcus constellatus subsp.
           constellatus]
          Length = 78

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K
Sbjct: 1   KTANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDK 58

Query: 888 DERVVSVERIRESEIVDEAESTE 910
             ++V+   +   E  +E E  E
Sbjct: 59  GAQIVTFTSV---EAENEKEVDE 78


>gi|289064496|gb|ADC80570.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 41/63 (65%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+A+IY+ L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|242032529|ref|XP_002463659.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
 gi|241917513|gb|EER90657.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
          Length = 188

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVFPVND 849
           +   L   ++L V+E G GKR     FR+ N +  G++   + +   + A+ +A   + +
Sbjct: 67  RVRDLSPPWLLFVAENGIGKRVPLNAFRLLNFNAVGLQGYKLPEDCRLAAVFIAGLSLTE 126

Query: 850 N----DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +    +Q++LVS  GT+ R+ V +I I SR ++GV++       ++
Sbjct: 127 DGESDEQVVLVSQSGTVNRIKVKDISIQSRHSRGVILMRLEHAGKI 172



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 646 LYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETC--------TQEND 695
            +++F  ++G  +R  L+ F  +  N  G    KL     + +V             +  
Sbjct: 74  PWLLFVAENGIGKRVPLNAFRLLNFNAVGLQGYKLPEDCRLAAVFIAGLSLTEDGESDEQ 133

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           ++L ++ G   R  +  I + + R+S GV  + L 
Sbjct: 134 VVLVSQSGTVNRIKVKDISIQS-RHSRGVILMRLE 167


>gi|5456802|gb|AAD43674.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 82

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 60/81 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++Q W L  +LIE QGN GS+D DP AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDF 153
            +L + +  LL D+ K+TV F
Sbjct: 61  AKLSRISEELLRDINKETVPF 81


>gi|289064504|gb|ADC80574.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAEAMGNYHPHGDESIYDTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|18175495|gb|AAL60062.1| DNA gyrase subunit A [Yersinia enterocolitica]
 gi|297374128|emb|CBL88422.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374130|emb|CBL88423.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374132|emb|CBL88424.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374134|emb|CBL88425.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374136|emb|CBL88426.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374138|emb|CBL88427.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374140|emb|CBL88428.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374142|emb|CBL88429.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374144|emb|CBL88430.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374146|emb|CBL88431.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374148|emb|CBL88432.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374150|emb|CBL88433.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374152|emb|CBL88434.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374154|emb|CBL88435.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374156|emb|CBL88436.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374158|emb|CBL88437.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374160|emb|CBL88438.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374162|emb|CBL88439.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374164|emb|CBL88440.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374172|emb|CBL88444.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374174|emb|CBL88445.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374176|emb|CBL88446.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374178|emb|CBL88447.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374180|emb|CBL88448.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374182|emb|CBL88449.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374184|emb|CBL88450.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374186|emb|CBL88451.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374188|emb|CBL88452.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374190|emb|CBL88453.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374192|emb|CBL88454.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374194|emb|CBL88455.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374196|emb|CBL88456.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374198|emb|CBL88457.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374200|emb|CBL88458.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374202|emb|CBL88459.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374204|emb|CBL88460.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374206|emb|CBL88461.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374208|emb|CBL88462.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374210|emb|CBL88463.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374212|emb|CBL88464.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374214|emb|CBL88465.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374216|emb|CBL88466.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374218|emb|CBL88467.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374220|emb|CBL88468.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374222|emb|CBL88469.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374224|emb|CBL88470.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374226|emb|CBL88471.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374228|emb|CBL88472.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374230|emb|CBL88473.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374232|emb|CBL88474.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374234|emb|CBL88475.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374236|emb|CBL88476.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374238|emb|CBL88477.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374240|emb|CBL88478.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374242|emb|CBL88479.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374244|emb|CBL88480.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374246|emb|CBL88481.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374248|emb|CBL88482.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374250|emb|CBL88483.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374252|emb|CBL88484.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374254|emb|CBL88485.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374256|emb|CBL88486.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374258|emb|CBL88487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374260|emb|CBL88488.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374262|emb|CBL88489.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374264|emb|CBL88490.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374266|emb|CBL88491.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374268|emb|CBL88492.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374270|emb|CBL88493.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374272|emb|CBL88494.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374274|emb|CBL88495.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374276|emb|CBL88496.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374278|emb|CBL88497.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374280|emb|CBL88498.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|325515303|gb|ADZ24285.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668264|gb|ADZ44576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|325668266|gb|ADZ44577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 59

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|289064500|gb|ADC80572.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPH +A+IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHADASIYDTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|289064506|gb|ADC80575.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYDTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|289064492|gb|ADC80568.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|289064494|gb|ADC80569.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|157890137|dbj|BAF81267.1| topoisomerase IV, A subunit [Pseudomonas putida]
          Length = 68

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 49/67 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M ++G++ + K+ K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQG
Sbjct: 1   IVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYTLVDGQG 60

Query: 116 NFGSVDG 122
           N+G+ D 
Sbjct: 61  NWGAPDD 67


>gi|5456780|gb|AAD43652.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G++HPHG+ ++YDA+ R++QDW LR +LIE  GN G++D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDFSVYDAMVRLSQDWKLRHVLIEMHGNNGNIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|289064508|gb|ADC80576.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 39/63 (61%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+ +IY  L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYGTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|118139706|gb|ABK63299.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/81 (55%), Positives = 58/81 (71%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+ +GK+ PHG+ + +DAL RMAQ +S R  L++GQGNFG++DGD  AA RY
Sbjct: 9   YKKSARIVGDDIGKHQPHGDTSAHDALVRMAQSFSTRAPLVDGQGNFGTIDGDSAAATRY 68

Query: 131 TECRLQKAAHFLLDDLGKDTV 151
           TE R+ + A   L DL KDTV
Sbjct: 69  TEARMTRIAEEELRDLDKDTV 89


>gi|315307938|gb|ADU04373.1| ParC [Vibrio cholerae O1 biovar El Tor]
          Length = 73

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D   
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 P-AAERYTECRLQ 136
             AA RYTE +L 
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|289064512|gb|ADC80578.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 40/63 (63%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|3152658|gb|AAC17107.1| topoisomerase IV subunit A [Citrobacter freundii]
          Length = 69

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 46/65 (70%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDP 124
            D   
Sbjct: 61  PDNPK 65


>gi|289064510|gb|ADC80577.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 39/63 (61%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+ +IY  L RMAQ WSLR  L++GQGNFGS
Sbjct: 2   MFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYGTLVRMAQPWSLRYPLVDGQGNFGS 61

Query: 120 VDG 122
              
Sbjct: 62  PGN 64


>gi|1498009|gb|AAB06321.1| DNA gyrase subunit A [Campylobacter sp.]
          Length = 59

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 45/59 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   ++GQGNFGS+DGD  
Sbjct: 1   SRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 59


>gi|4545085|gb|AAD22386.1| DNA gyrase A [Enterobacter cloacae]
          Length = 55

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
            +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 55


>gi|308445285|gb|ADO32828.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYGAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|36988567|gb|AAQ87921.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 2   MSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 61

Query: 120 VDGDPP-AAERYTE 132
            D     AA RYTE
Sbjct: 62  PDDPKSFAAMRYTE 75


>gi|1542969|gb|AAB08038.1| topoisomerase IV subunit; Method: conceptual translation supplied
           by author [Streptococcus pneumoniae]
          Length = 69

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 47/69 (68%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W    +
Sbjct: 1   KPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEI 60

Query: 110 LIEGQGNFG 118
           L+E  GN G
Sbjct: 61  LVEMHGNNG 69


>gi|297374168|emb|CBL88442.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|49425512|gb|AAT66071.1| DNA topoisomerase IV subunit A [Shigella dysenteriae]
          Length = 69

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTE 132
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE
Sbjct: 1   SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 60

Query: 133 CRLQKAAH 140
            RL K + 
Sbjct: 61  SRLSKYSE 68


>gi|255018820|ref|ZP_05290946.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-515]
          Length = 80

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           NR G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  GV
Sbjct: 1   NRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGV 58

Query: 881 VIFSTAKDER 890
            +    +D +
Sbjct: 59  KLIRLDEDRK 68


>gi|315307940|gb|ADU04374.1| ParC [Vibrio fluvialis]
 gi|315307942|gb|ADU04375.1| ParC [Vibrio fluvialis]
          Length = 73

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 1/73 (1%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D   
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 60

Query: 125 P-AAERYTECRLQ 136
             AA RYTE +L 
Sbjct: 61  SFAAMRYTEAKLS 73


>gi|308445279|gb|ADO32825.1| ParC [Neisseria gonorrhoeae]
 gi|308445287|gb|ADO32829.1| ParC [Neisseria gonorrhoeae]
 gi|308445293|gb|ADO32832.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|114228537|gb|ABI58273.1| DNA topoisomerase IV subunit A [Shigella flexneri]
          Length = 72

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K  R  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     
Sbjct: 1   ASAKFKKSDRTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 60

Query: 126 AAERYTECRLQK 137
           AA RYTE RL K
Sbjct: 61  AAMRYTESRLSK 72


>gi|18481444|gb|AAL73447.1|AF435418_1 DNA topoisomerase IV subunit C [Aeromonas caviae]
 gi|18481448|gb|AAL73449.1|AF435420_1 DNA topoisomerase IV subunit C [Aeromonas sobria]
 gi|298104542|gb|ADI55011.1| DNA topoisomerase IV subunit C [Aeromonas caviae]
          Length = 68

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 2   MSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 61

Query: 120 VDGDP 124
            D   
Sbjct: 62  PDDPK 66


>gi|12642572|gb|AAK00289.1|AF302141_1 ParC [Stenotrophomonas maltophilia]
          Length = 77

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/69 (57%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYT 131
           K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D     AA RYT
Sbjct: 1   KSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYT 60

Query: 132 ECRLQKAAH 140
           E +L   A 
Sbjct: 61  ESKLTPIAE 69


>gi|36988539|gb|AAQ87919.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 74

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP-AAERYTE 132
            D     AA RYTE
Sbjct: 61  PDDPKSFAAMRYTE 74


>gi|36988497|gb|AAQ87916.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 2   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 61

Query: 120 VDGDPP-AAERYTE 132
            D     AA RYTE
Sbjct: 62  PDDPKSFAAMRYTE 75


>gi|308445273|gb|ADO32822.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+   Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|269219417|ref|ZP_06163271.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211152|gb|EEZ77492.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 241

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 88/257 (34%), Gaps = 52/257 (20%)

Query: 591 FFSSLGFVYKEKVWRLP---IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             +S G   +  V  +P        A G  L  ++SL +GER   ++   E         
Sbjct: 2   VVTSAGRAVRLDVLDVPVAPDAPSLAAGARLRELVSLAEGERAVGLIDLSE-----AAAP 56

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            V AT+ G ++R          +     + L+  D ++    C   + I+L +     +R
Sbjct: 57  PVLATERGKIKRVGAG---HPGKDSWELIGLEKGDSVIGCGHCADADQIVLVSSDAHLLR 113

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  S++R   GR   GV GI L    +VI++ +V   D                     G
Sbjct: 114 FDGSSVRP-QGRAGRGVAGIRLGAEAKVIALGVVPGDDV--------------------G 152

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            T   T   +  ++EG ++                    G  K T    F    R   G+
Sbjct: 153 GTLVATVSGSRDALEGTVA--------------------GNAKVTPLDRFPAKGRGTGGV 192

Query: 828 RATDVSKINEIGALVAV 844
           RA    +  +   L AV
Sbjct: 193 RAQRFLRGEDCLQLAAV 209



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +  +E+G  KR  +           G  + ++  + +  +++      D DQI+LVS   
Sbjct: 58  VLATERGKIKRVGA--------GHPGKDSWELIGLEKGDSVIGCGHCADADQIVLVSSDA 109

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            L+R   + +R   RA +GV       + +V+++  +   ++
Sbjct: 110 HLLRFDGSSVRPQGRAGRGVAGIRLGAEAKVIALGVVPGDDV 151



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 30/211 (14%)

Query: 698 LTTKLGQCVRFPISAIR--VFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERI 752
           + T  G+ VR  +  +     A   + G R    +SLA+G++ + +  +  A A      
Sbjct: 2   VVTSAGRAVRLDVLDVPVAPDAPSLAAGARLRELVSLAEGERAVGLIDLSEAAAPPVLAT 61

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
              K           D+ E+  L+   SV G        +       I+ VS      R 
Sbjct: 62  ERGKIKRVGAGHPGKDSWELIGLEKGDSVIGCGHCADADQ-------IVLVSSDAHLLRF 114

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI--ILV------------SD 858
                R   R+G+G+    +    +    V    V   D +   LV            + 
Sbjct: 115 DGSSVRPQGRAGRGVAGIRLGAEAK----VIALGVVPGDDVGGTLVATVSGSRDALEGTV 170

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            G     P++      R T GV      + E
Sbjct: 171 AGNAKVTPLDRFPAKGRGTGGVRAQRFLRGE 201


>gi|213025984|ref|ZP_03340431.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 39

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 35/39 (89%)

Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
          ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G
Sbjct: 1  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 39


>gi|308445289|gb|ADO32830.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|308445295|gb|ADO32833.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHP G+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPRGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|320540649|ref|ZP_08040296.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029289|gb|EFW11321.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 79

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E +S E
Sbjct: 1   MITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLE 56


>gi|18481446|gb|AAL73448.1|AF435419_1 DNA topoisomerase IV subunit C [Aeromonas hydrophila]
          Length = 68

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 44/65 (67%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 2   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 61

Query: 120 VDGDP 124
            D   
Sbjct: 62  PDDPK 66


>gi|308445281|gb|ADO32826.1| ParC [Neisseria gonorrhoeae]
 gi|308445283|gb|ADO32827.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHGN++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGNSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|207109271|ref|ZP_03243433.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 58

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 4/62 (6%)

Query: 1  MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
          M + +++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1  MQDRLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61 MQ 62
           +
Sbjct: 57 HE 58


>gi|308445277|gb|ADO32824.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|406489|gb|AAD12504.1| DNA gyrase B [Mycoplasma genitalium]
          Length = 77

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 40/53 (75%)

Query: 9  DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
          +  +   + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G  
Sbjct: 13 ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAY 65


>gi|4928199|gb|AAD33460.1|AF129761_1 DNA topoisomerase IV subunit C [Streptococcus constellatus]
          Length = 74

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKA 138
            RYTE RL + 
Sbjct: 61  MRYTEARLSEI 71


>gi|76664751|emb|CAJ17814.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 71

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/66 (62%), Positives = 52/66 (78%)

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP+VL    PN+L+NG  GIAVGMAT IPTHNLGEV+DG ++ I N +I ++ LM+ I+G
Sbjct: 3   EPLVLPTALPNLLINGATGIAVGMATKIPTHNLGEVIDGIISYIHNKNISINQLMQHIKG 62

Query: 223 PDFPTG 228
           PDFPTG
Sbjct: 63  PDFPTG 68


>gi|4928191|gb|AAD33456.1|AF129757_1 DNA topoisomerase IV subunit C [Streptococcus oralis ATCC 35037]
 gi|4928195|gb|AAD33458.1|AF129759_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|4928197|gb|AAD33459.1|AF129760_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 74

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKA 138
            RYTE RL + 
Sbjct: 61  MRYTEARLSEI 71


>gi|2564211|emb|CAB17081.1| gyrase A [Acholeplasma laidlawii PG-8A]
          Length = 53

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ARI G+VMGKYHPHG+++IY+A+ RMAQ +S R  L++G GNFGSVDGD  AA
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYNAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAA 53


>gi|327342915|dbj|BAK09290.1| DNA gyrase subunit A [Streptococcus constellatus subsp. pharyngis]
          Length = 78

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K  ++V+ 
Sbjct: 6   TEKNGPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTRRATLGVKVMRLDKGAQIVTF 65

Query: 895 ERIRESEIVDEAESTE 910
             +   E  +E E  E
Sbjct: 66  TSV---EAENEKEVDE 78


>gi|313192278|emb|CBY05947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 108

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYD
Sbjct: 47  RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 106

Query: 159 GS 160
           G+
Sbjct: 107 GN 108


>gi|75763518|ref|ZP_00743229.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74488989|gb|EAO52494.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 67

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2  QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72 VKCAR 76
           K A+
Sbjct: 62 RKSAK 66


>gi|76664886|emb|CAJ17879.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 135

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           I+ +    D               E+Q++AILE+ L +L       +  E  +L  EI E
Sbjct: 9   IRLIKSSADIKEAQQNLMSQYRFDEIQSKAILEMSLQKLANQETQKLITEEANLTQEILE 68

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
           C  I+ S+++   I+++ELL +K +    R+T +  +  LD++DED I  + +VVT+++ 
Sbjct: 69  CQSIIDSQTKKEKILEKELLEIKKKYQDERKTVLNFDASLDVKDEDLIEEKTIVVTITNE 128

Query: 546 GYVKRVP 552
           GY+K V 
Sbjct: 129 GYIKSVD 135


>gi|4928193|gb|AAD33457.1|AF129758_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis SK1]
          Length = 74

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 53/71 (74%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKA 138
            RYTE RL + 
Sbjct: 61  MRYTEARLSEM 71


>gi|224532517|ref|ZP_03673142.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512589|gb|EEF82965.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+++D+I+L
Sbjct: 17  ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVSEDDEILL 75

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           VS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 76  VSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 115


>gi|28193545|emb|CAD56005.1| topoisomerase IV [Proteus mirabilis]
          Length = 64

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D   
Sbjct: 1   SSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 58


>gi|308445291|gb|ADO32831.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMGRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|227542700|ref|ZP_03972749.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181522|gb|EEI62494.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 79

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 47/79 (59%)

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LELRL RLTGL  + + +E   +   I E + IL++ +RL+ +I++EL +VK E    RR
Sbjct: 1   LELRLHRLTGLEHEKLLSEYQEILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARR 60

Query: 518 TRIVEGLLDMEDEDCIVRE 536
           T IV   +D+   D I  E
Sbjct: 61  TEIVASQVDLTIADLITEE 79


>gi|294671325|ref|ZP_06736176.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306957|gb|EFE48200.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 72

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +L++  G LIR  V +IR   RA  GV + +  + E++VS+ER+ E      A   E
Sbjct: 1   MLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGEQLVSLERVAEEPEDASASGEE 57



 Score = 38.8 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +L T  G  +R  +  IR   GR + GVR I+L +G+Q++S+  V     D
Sbjct: 1   MLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGEQLVSLERVAEEPED 50


>gi|262411032|gb|ACY66882.1| GyrA [Salmonella enterica]
          Length = 63

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           RR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD++ RMAQ +SLR 
Sbjct: 9   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPFSLRY 63


>gi|36988526|gb|AAQ87918.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 73

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 2   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 61

Query: 122 GDPP-AAERYTE 132
                AA RYTE
Sbjct: 62  DPKSFAAMRYTE 73


>gi|36988511|gb|AAQ87917.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 72

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 1   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 GDPP-AAERYTE 132
                AA RYTE
Sbjct: 61  DPKSFAAMRYTE 72


>gi|36988551|gb|AAQ87920.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 71

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D 
Sbjct: 1   LGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDD 60

Query: 123 DPP-AAERYTE 132
               AA RYTE
Sbjct: 61  PKSFAAMRYTE 71


>gi|3767588|dbj|BAA33853.1| ParC subunit of DNA topoisomerase IV [Enterococcus faecalis]
          Length = 69

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M + G  ++K + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN
Sbjct: 1   LFSMNKDGNTFDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGN 60

Query: 117 FGSVDGDPP 125
            GS+DGDPP
Sbjct: 61  NGSMDGDPP 69


>gi|50079973|gb|AAT69559.1| DNA gyrase [Acinetobacter baumannii]
          Length = 52

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 43/51 (84%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           KYHPH ++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R
Sbjct: 2   KYHPHCDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVR 52


>gi|71842512|gb|AAZ43363.1| ParC [Escherichia coli]
          Length = 65

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
             + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D   
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 59


>gi|4566360|gb|AAD23314.1| topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
 gi|4566362|gb|AAD23315.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566368|gb|AAD23318.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566380|gb|AAD23324.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 58/77 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|229025029|ref|ZP_04181458.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
 gi|228736364|gb|EEL86930.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
          Length = 193

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 84/238 (35%), Gaps = 55/238 (23%)

Query: 656 NVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            +++ +L+ + +Q      +A+ L   DE++ +      +DI+L T     + F    + 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 60

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R + GV+ I+L + D V S                                     
Sbjct: 61  PVGVR-AAGVKAINLKEDDYVASG------------------------------------ 83

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                           + L  ++  ++ V+++G  KR  + +   S R+ +G+      K
Sbjct: 84  ----------------KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELK 127

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            N    +V +  V D++ I + ++K  +  +     R   R + G ++        VV
Sbjct: 128 RNPY-RIVGIEIVRDDELIYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 184



 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+T    +++  R  +   A ++ K +E   +V +F  +    I+L +     +    +E
Sbjct: 3   KKTELNQYKVQ-RYSRAFVAVNLKKEDE---VVDIFATDGTSDIVLATHGAYALIFHEDE 58

Query: 870 IRIASRATKGVVIFSTAKDERVVS 893
           +        GV   +  +D+ V S
Sbjct: 59  VSPVGVRAAGVKAINLKEDDYVAS 82


>gi|4566372|gb|AAD23320.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566378|gb|AAD23323.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 58/77 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|71842518|gb|AAZ43366.1| ParC [Escherichia coli]
          Length = 65

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
             + K+ K AR  G+V+GKYHPHG+ A Y A+  M Q +S R  L++GQGN+G+ D   
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMVQPFSYRYPLVDGQGNWGAPDDPK 59


>gi|4566364|gb|AAD23316.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566366|gb|AAD23317.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566374|gb|AAD23321.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|170783860|gb|ACB37404.1| DNA gyrase subunit A [Spiroplasma eriocheiris]
 gi|170783863|gb|ACB37406.1| DNA gyrase subunit A [Spiroplasma sp. CRAYFISH]
 gi|170783866|gb|ACB37408.1| DNA gyrase subunit A [Spiroplasma sp. SHRIMP]
          Length = 68

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          S++++       ++ D M++ +  YA  +I  RA+PD+RDGLKPV RRILF M ++ + +
Sbjct: 2  SNQKQTDNELVYTLNDIMEDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 68 NKKYVKC 74
          N  Y K 
Sbjct: 62 NSSYKKS 68


>gi|71842514|gb|AAZ43364.1| ParC [Escherichia coli]
          Length = 65

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
             + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G  D   
Sbjct: 1   NASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGVPDDPK 59


>gi|8248337|gb|AAF74150.1|AF246731_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|116282956|gb|ABJ97453.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 61

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           YHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 1   YHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 56


>gi|8248335|gb|AAF74149.1|AF246730_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248343|gb|AAF74153.1|AF246734_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248349|gb|AAF74156.1|AF246737_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYNAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|308445275|gb|ADO32823.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+  E++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVREILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|170783857|gb|ACB37402.1| DNA gyrase subunit A [Spiroplasma mirum]
          Length = 68

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          S++++       ++ D M + +  YA  +I  RA+PD+RDGLKPV RRILF M ++ + +
Sbjct: 2  SNQKQTDNELVYTLNDIMDDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 68 NKKYVK 73
          N  Y K
Sbjct: 62 NSSYKK 67


>gi|229086163|ref|ZP_04218382.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
 gi|228697147|gb|EEL49913.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
          Length = 193

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 55/238 (23%)

Query: 656 NVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            +++ +L+ + +Q      +A+ L   DE++ +      +DI+L T     + F    + 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFVTDGTSDIVLATHGAYALIFGEEEVS 60

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R + GV+ I+L + D V S                                     
Sbjct: 61  PVGIR-AAGVKAINLKEDDYVASG------------------------------------ 83

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                           + L  ++  ++ V+++G  KR  + +   S R+ +G+      K
Sbjct: 84  ----------------KPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELK 127

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            N    +V +  V D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 128 RNPY-RIVGIEIVRDDELVYMKTEKQIVEEIDPKMFRNKDRYSNGSLVLDVTDTGEVV 184



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSD 858
           I+  +   +       +         G++A ++ + +    + +  P+N + DQ+ILV+ 
Sbjct: 42  IVLATHGAYALIFGEEEVSPVGIRAAGVKAINLKEDD---YVASGKPLNGEKDQLILVTQ 98

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIV 903
           +G + R+  +EI  ++RA +G+VIF   K    R+V +E +R+ E+V
Sbjct: 99  RGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIVGIEIVRDDELV 145



 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+T    +++  R  +   A ++ K +E   +V +F  +    I+L +     +     E
Sbjct: 3   KKTELNQYKVQ-RYSRAFVAVNLKKDDE---VVDIFVTDGTSDIVLATHGAYALIFGEEE 58

Query: 870 IRIASRATKGVVIFSTAKDERVVS 893
           +        GV   +  +D+ V S
Sbjct: 59  VSPVGIRAAGVKAINLKEDDYVAS 82


>gi|4566370|gb|AAD23319.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566376|gb|AAD23322.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|18202021|sp|O33149|GYRA_MYCMA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mma
           gyrA intein
 gi|2546990|emb|CAA05167.1| DNA gyrase subunit A [Mycobacterium malmoense]
          Length = 473

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC--RLQKAA 139
           MG YHPHGNA+IY+ L RMAQ WSLR  L+ GQGNFGS   +PPAA RY      L +  
Sbjct: 1   MGNYHPHGNASIYNTLVRMAQPWSLRYPLVNGQGNFGSPGNNPPAAMRYCCTGDALVRLP 60

Query: 140 HFLLDDLGKDTVDFRPNYDG 159
                 +G       PN D 
Sbjct: 61  FGHSVRIGNFVPAACPNSDN 80


>gi|156311443|ref|XP_001617785.1| hypothetical protein NEMVEDRAFT_v1g69871 [Nematostella vectensis]
 gi|156195794|gb|EDO25685.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
              +VV  TK G V++ KL DF +  ++G  A+ +   DE+L  +    +N I++  K G
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDFSRPRQTGVNAITIQEGDELLEAKLTDGDNYIMMAVKSG 60

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAK 731
           + + F  S +R   GR ++GV GI L+ 
Sbjct: 61  RAICFEESKVRP-TGRGAIGVNGIELSD 87



 Score = 46.1 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           + +F++  ++KG  K+T   DF    ++G            E   L+     + ++ I++
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDFSRPRQTGVNAITIQ-----EGDELLEAKLTDGDNYIMM 55

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
               G  I    +++R   R   GV     + 
Sbjct: 56  AVKSGRAICFEESKVRPTGRGAIGVNGIELSD 87


>gi|8248317|gb|AAF74140.1|AF246721_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248319|gb|AAF74141.1|AF246722_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248321|gb|AAF74142.1|AF246723_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248323|gb|AAF74143.1|AF246724_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248327|gb|AAF74145.1|AF246726_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248331|gb|AAF74147.1|AF246728_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248333|gb|AAF74148.1|AF246729_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|28193551|emb|CAD56008.1| topoisomerase IV [Providencia stuartii]
          Length = 58

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D   
Sbjct: 1   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 52


>gi|213856910|ref|ZP_03384150.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 66

 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 49/66 (74%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG 
Sbjct: 1   TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 60

Query: 248 IVIRGV 253
           + IR  
Sbjct: 61  VYIRAR 66


>gi|8248341|gb|AAF74152.1|AF246733_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248345|gb|AAF74154.1|AF246735_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248347|gb|AAF74155.1|AF246736_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|120969678|gb|ABM45913.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           KYHPHG+ A+Y+ + RMAQD+++R +L++GQGNFGS+DG   AA RYTE R+ K
Sbjct: 1   KYHPHGDTAVYNTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAK 54


>gi|8248353|gb|AAF74158.1|AF246739_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYYAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEMAGYLLQDI 72


>gi|9957073|gb|AAG09201.1|AF175687_1 topoisomerase IV [Bacteroides fragilis]
          Length = 58

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 41/57 (71%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MA  +S R  L++GQGN+G
Sbjct: 2   ELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAHPFSYRYPLVDGQGNWG 58


>gi|8248339|gb|AAF74151.1|AF246732_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248351|gb|AAF74157.1|AF246738_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|8248329|gb|AAF74146.1|AF246727_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|8248355|gb|AAF74159.1|AF246740_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEMAGYLLQDI 72


>gi|297180058|gb|ADI16283.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
          subunit [uncultured bacterium HF0010_16H03]
          Length = 89

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
          +S+    + SYL YA+ VIL RA+P++ DGLKPV RRI      + +  +      
Sbjct: 10 ISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRIYMQCQSLVLMLDLNIKNL 65


>gi|8248325|gb|AAF74144.1|AF246725_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 72

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|2598665|dbj|BAA23308.1| CfparC [Citrobacter freundii]
 gi|2780357|dbj|BAA24279.1| parC [Enterobacter cloacae]
          Length = 49

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 37/49 (75%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 49


>gi|1419297|emb|CAA62576.1| gyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 91

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI    D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 1   TVDDCDQIHDDHDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 60

Query: 906 AES 908
            ++
Sbjct: 61  LDA 63


>gi|308743035|gb|ADO39960.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|4545083|gb|AAD22385.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 45

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 45


>gi|308743037|gb|ADO39961.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 41/47 (87%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|308743033|gb|ADO39959.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|94502465|ref|ZP_01308887.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94450978|gb|EAT13981.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 66

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P+VL    P++L  G  GIAVGMAT++P  ++ E  +   +  D  +I ++ LM+ I+ P
Sbjct: 2   PLVLPTCIPHLLFYGSSGIAVGMATHMPPPHIVESFEAICSYFDYKNITIEELMKYIKAP 61

Query: 224 DFPTG 228
            FP+G
Sbjct: 62  AFPSG 66


>gi|2197131|gb|AAB61299.1| GyrA [Streptomyces ambofaciens]
          Length = 88

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 61/89 (68%), Gaps = 2/89 (2%)

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           SI +R V  +E+    R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE+  R
Sbjct: 1   SITMRAVVEVEEIQN-RQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSLR 59

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQ 334
            G R+VI LKR   A V+LN LY++T LQ
Sbjct: 60  TGQRLVIVLKRDVVAKVVLNNLYKHTDLQ 88


>gi|173000|gb|AAB59328.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 166

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 22/182 (12%)

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP       P +LVNG  GI  G +T IP  N  E++     ++++ +++          
Sbjct: 3   EPEWYLPILPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMNDEELEQ--------- 53

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
                     G TG           I  R    IE+       + +TE+P +   + + E
Sbjct: 54  ----MHPWFRGWTGTIEEIEPLPYIIYGR----IEQI--GDNVLEITELPARTWTSTIKE 103

Query: 283 KIAELV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            +   +   +K    I D+ ++ D    + +I L     A       Y    L S  S+ 
Sbjct: 104 YLLLGLSGNDKIKPWIKDMEEQHDDN-IKFIITLSPEEMAKTRKIGFYERFKLISPISLM 162

Query: 341 MV 342
            +
Sbjct: 163 NM 164


>gi|118175423|gb|ABK76268.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           KYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSVDG   AA RYTE R++K
Sbjct: 1   KYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEK 54


>gi|167946760|ref|ZP_02533834.1| DNA gyrase, A subunit [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 73

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 43/64 (67%)

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           +TGL +D I  E   L  +I   LDILSS  RL+ +I+ ELL+++++ + PRRT+I++  
Sbjct: 1   MTGLEQDKIIKEYEELLEKIANLLDILSSSFRLMEVIRDELLAIREQYNDPRRTQIIQDR 60

Query: 525 LDME 528
           LD+ 
Sbjct: 61  LDLT 64


>gi|312184024|gb|ADQ42775.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 72

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/63 (63%), Positives = 47/63 (74%)

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             D+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL DL KDTVD+  NYDGS
Sbjct: 10  GSDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEDNYDGS 69

Query: 161 FQE 163
            + 
Sbjct: 70  ERM 72


>gi|50079975|gb|AAT69560.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 58

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQ 136
           +V+GKYHPH ++A Y+A+  MAQ +S R  LIEGQGN+GS D     AA RYTE +L 
Sbjct: 1   DVLGKYHPHCDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLS 58


>gi|156347131|ref|XP_001621647.1| hypothetical protein NEMVEDRAFT_v1g144180 [Nematostella vectensis]
 gi|156207799|gb|EDO29547.1| predicted protein [Nematostella vectensis]
          Length = 170

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  +S     EK    VS  D +    + ++ N    R+IP L DGLKP  R+++F   +
Sbjct: 83  EQGLSELYLYEKDTKRVSYCDFVNKELILFS-NTDNERSIPSLVDGLKPGQRKVMFTCFK 141

Query: 63  MGVEWNKKYVKCARISGEVMGKYH 86
              +   K  + A    E+   +H
Sbjct: 142 RNDKREVKVAQLAGSIAELSAYHH 165


>gi|91093533|gb|ABE11588.1| ParC [Escherichia coli]
          Length = 68

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTECRLQKAAH 140
           KYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE RL K + 
Sbjct: 2   KYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 59


>gi|7025462|gb|AAF35892.1| topoisomerase II [Mytilus edulis]
          Length = 226

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S  + +    + ++ N+   R+IP L DGLKP  R+++F  ++  +    K  +
Sbjct: 143 KETKHISYNEFINRELVLFS-NMDNERSIPSLVDGLKPGQRKVIFTCIKRNLIRELKVAQ 201

Query: 74  CARISGEVMGKYHPHGNAAIYDALARM 100
            A    E    +H  G  ++   +  +
Sbjct: 202 LAGSVAEQSSYHH--GEQSLMSTIINL 226


>gi|71842508|gb|AAZ43361.1| GyrA [Escherichia coli]
          Length = 52

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 40/52 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
             +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVD 52


>gi|112383336|gb|ABI17808.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|71842510|gb|AAZ43362.1| GyrA [Escherichia coli]
          Length = 52

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 40/52 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
             +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVD 52


>gi|2909389|emb|CAA76311.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 214

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 11/195 (5%)

Query: 240 AYATGRGSIVIRG----VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKR 292
           +Y   +G+I        V + E    +   I ++E+P +       E++ E +    EK 
Sbjct: 21  SYKNFKGTIEELASNQYVINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKT 80

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK---P 349
              I D R+       + VI++     A+     L++   LQ+  + N + L  +     
Sbjct: 81  PPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLK 140

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           +  T++ ILK F   R +    R ++LL      +  L   A  +    +   II   P 
Sbjct: 141 KYDTVLDILKDFFELRLKYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKP- 199

Query: 410 PETARRELMQRSWNA 424
            +   + L+QR +++
Sbjct: 200 KKELIKVLIQRGYDS 214


>gi|186659436|dbj|BAG30949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y +  RMAQ +SLR 
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRY 52


>gi|56807884|ref|ZP_00365716.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 73

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 2   TEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 53


>gi|112383322|gb|ABI17801.1| topoisomerase IV [Streptococcus suis]
 gi|112383324|gb|ABI17802.1| topoisomerase IV [Streptococcus suis]
 gi|112383326|gb|ABI17803.1| topoisomerase IV [Streptococcus suis]
 gi|112383328|gb|ABI17804.1| topoisomerase IV [Streptococcus suis]
 gi|112383330|gb|ABI17805.1| topoisomerase IV [Streptococcus suis]
 gi|112383332|gb|ABI17806.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 55/72 (76%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|323695906|gb|ADX99577.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 44/58 (75%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           + HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 2   QLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 59


>gi|112383334|gb|ABI17807.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|112383354|gb|ABI17817.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|49296|emb|CAA78157.1| DNA Gyrase subunit A [Borrelia burgdorferi]
          Length = 96

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVT 541
           IK+  DIL +  R++ I K+  +++  +    RRT+I+  E +L     D + +E++VV 
Sbjct: 3   IKDYEDILLNPVRIINIYKRRTINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVM 62

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           ++  G++KR+  + Y+ Q  GGKG S   + D D
Sbjct: 63  LTKKGFLKRLSQNEYKLQGTGGKGLSSYDLNDGD 96



 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 37/75 (49%)

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           RR I+   +     +     +  + +    +L  KE  ++ +++KGF KR S  ++++  
Sbjct: 22  RRTINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQG 81

Query: 822 RSGKGIRATDVSKIN 836
             GKG+ + D++  +
Sbjct: 82  TGGKGLSSYDLNDGD 96


>gi|112383338|gb|ABI17809.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 55/72 (76%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 140 HFLLDDLGKDTV 151
            +LL+D+ K TV
Sbjct: 61  GYLLEDIEKKTV 72


>gi|112383340|gb|ABI17810.1| topoisomerase IV [Streptococcus suis]
 gi|112383342|gb|ABI17811.1| topoisomerase IV [Streptococcus suis]
 gi|112383344|gb|ABI17812.1| topoisomerase IV [Streptococcus suis]
 gi|112383346|gb|ABI17813.1| topoisomerase IV [Streptococcus suis]
 gi|112383348|gb|ABI17814.1| topoisomerase IV [Streptococcus suis]
 gi|112383350|gb|ABI17815.1| topoisomerase IV [Streptococcus suis]
 gi|112383352|gb|ABI17816.1| topoisomerase IV [Streptococcus suis]
 gi|112383356|gb|ABI17818.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|228478514|gb|ACQ41843.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/43 (62%), Positives = 36/43 (83%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+ A+Y  + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDTAVYGTIVRMAQDFSLRYMLIDGQG 44


>gi|18308990|ref|NP_560924.1| hypothetical protein CPE0008 [Clostridium perfringens str. 13]
 gi|18143665|dbj|BAB79714.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 83

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++ +G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 5   IINSQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEIT 59


>gi|167949304|ref|ZP_02536378.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 105

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 29/118 (24%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR +Y L++  DR H+L GL IA  N+DEV+ IIR+  +P   + ELM+R        
Sbjct: 1   MTRRLQYRLDQVLDRLHLLEGLMIAYLNIDEVIAIIRYEDDP---KAELMRR-------- 49

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               LSE Q  AIL LRL  L  L    IR E + L  E   
Sbjct: 50  ------------------FALSERQAEAILNLRLRHLAKLEEFKIRGEQDELEQERDW 89


>gi|49425333|gb|AAT66027.1| DNA topoisomerase IV subunit A [Corynebacterium jeikeium]
          Length = 58

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +V G YHP+G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 1   DVAGPYHPNGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 56


>gi|228478508|gb|ACQ41840.1| gyrase subunit A [Burkholderia multivorans]
 gi|228478512|gb|ACQ41842.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 64.9 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 38/43 (88%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|323695908|gb|ADX99578.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
 gi|323695910|gb|ADX99579.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           + HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 2   QLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 59


>gi|7682321|gb|AAF67217.1|AF144766_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682325|gb|AAF67219.1|AF144768_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682328|gb|AAF67220.1|AF144769_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682330|gb|AAF67221.1|AF144770_1 topoisomerase IV subunit A [Streptococcus sanguinis]
 gi|7682332|gb|AAF67222.1|AF144771_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682323|gb|AAF67218.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 1   NFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 55


>gi|75992958|gb|ABA33682.1| GyrA-like protein [Haemophilus parasuis]
          Length = 52

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           ++S  GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L  
Sbjct: 1   SLSLAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCL 52


>gi|167948876|ref|ZP_02535950.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 65

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +++ GTL+R PV ++    R T+GV +    K ER++ +ERI   E   +A
Sbjct: 1   ITNGGTLVRTPVRDVSQMGRNTQGVTMIRLGKAERLIGIERIENLEEEQDA 51


>gi|228478516|gb|ACQ41844.1| gyrase subunit A [Burkholderia multivorans]
          Length = 43

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 37/43 (86%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQG
Sbjct: 1   ESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 43


>gi|228478506|gb|ACQ41839.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/43 (65%), Positives = 37/43 (86%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|186659434|dbj|BAG30948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 54

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y +  RMAQ +SLRL
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRL 52


>gi|202073603|gb|ACH96272.1| topoisomerase IV ParC subunit [Waddlia chondrophila WSU 86-1044]
 gi|202073605|gb|ACH96273.1| topoisomerase IV ParC subunit [Waddlia chondrophila]
          Length = 73

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DGLKPV RRIL  + +     + K  K A ++G+ M  YHPHG+AAI DAL  M    +
Sbjct: 1   VDGLKPVQRRILHTLYK---IHDGKLHKVANVAGQTMA-YHPHGDAAIIDALVNM----A 52

Query: 106 LRLLLIEGQGNFGSVDGDPPA 126
            +   ++ QGNFG++    PA
Sbjct: 53  NKGFFLDCQGNFGNIYTGDPA 73


>gi|7682335|gb|AAF67223.1|AF144772_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 1   NFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 55


>gi|7682339|gb|AAF67225.1|AF144774_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 1   YFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 55


>gi|1805621|dbj|BAA11412.1| GryA [Staphylococcus haemolyticus]
          Length = 40

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQ
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQ 40


>gi|7682337|gb|AAF67224.1|AF144773_1 topoisomerase IV subunit A [Streptococcus oralis]
          Length = 61

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 1   NFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 55


>gi|404646|gb|AAC52136.1| DNA topoisomerase IIalpha/novel coding sequence fusion [Mus
           musculus]
          Length = 241

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 25/208 (12%)

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK- 348
           EK    I D R+       + VI++     A+     L++   LQS  + N + L  +  
Sbjct: 9   EKTPSLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVG 68

Query: 349 --PERFTLIGILKAFVAFREEVVVRRTKYLL-----------NKARDRAHVLVGLAIAVA 395
              +  T++ IL+ F   R +    R ++LL           N+AR     + G  +   
Sbjct: 69  CLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIEN 128

Query: 396 N----LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
                L +V+    +  +P  A +E  Q+  +  + ++       S     +  T     
Sbjct: 129 KPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTF---- 184

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNS 479
                +L++ L  LT   +D++  + N 
Sbjct: 185 ---NYLLDMPLWYLTKEKKDELCKQRNE 209


>gi|213621007|ref|ZP_03373790.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 72

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 +SE Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K
Sbjct: 1   MMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLK 60

Query: 503 QELLSVKDELDT 514
           +EL +  D    
Sbjct: 61  KELQADSDAYGD 72


>gi|169836657|ref|ZP_02869845.1| hypothetical protein cdivTM_06067 [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +L++ +GTLIR  +N+I + SR+  GV I     +E++ SV +I E+    E 
Sbjct: 1   MLITSEGTLIRTSINDITVQSRSATGVRIMKVRNNEKIASVVKITEAPDFSEE 53


>gi|116489836|gb|ABJ98821.1| GyrA [Enterobacter cloacae]
          Length = 40

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 35/40 (87%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQ
Sbjct: 1   ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQ 40


>gi|10444202|gb|AAG17772.1| topoisomerase IV subunit C [Methylobacterium extorquens AM1]
 gi|10444204|gb|AAG17773.1| topoisomerase IV subunit C [Methylophilus methylotrophus]
 gi|10444206|gb|AAG17774.1| topoisomerase IV subunit C [Methylobacillus sp. SK1]
 gi|10444208|gb|AAG17775.1| topoisomerase IV subunit C [Methylovorus sp. SS1]
          Length = 40

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQ
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQ 40


>gi|228478510|gb|ACQ41841.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 38/43 (88%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           + ARI G+V+GKYHPHG+AA+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   ESARIVGDVIGKYHPHGDAAVYDRIVRMAQDFSLRYMLIDGQG 44


>gi|28193555|emb|CAD56010.1| DNA gyrase [Providencia stuartii]
          Length = 40

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 35/40 (87%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQ
Sbjct: 1   ARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQ 40


>gi|31559503|emb|CAD92770.1| DNA gyrase subunit A [Mycobacterium xenopi]
          Length = 40

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD L RMAQ WS+R  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQ 40


>gi|1041429|emb|CAA60602.1| DNA gyrase [Mycobacterium aurum]
 gi|1041440|emb|CAA60606.1| DNA gyrase [Mycobacterium fortuitum]
 gi|1041616|emb|CAA60609.1| DNA gyrase [Mycobacterium peregrinum]
 gi|326535743|gb|ADZ76538.1| DNA gyrase A [Mycobacterium agri]
 gi|326535745|gb|ADZ76539.1| DNA gyrase A [Mycobacterium aichiense]
 gi|326535747|gb|ADZ76540.1| DNA gyrase A [Mycobacterium aurum]
 gi|326535751|gb|ADZ76542.1| DNA gyrase A [Mycobacterium chitae]
 gi|326535753|gb|ADZ76543.1| DNA gyrase A [Mycobacterium chubuense]
 gi|326535755|gb|ADZ76544.1| DNA gyrase A [Mycobacterium flavescens]
 gi|326535757|gb|ADZ76545.1| DNA gyrase A [Mycobacterium gadium]
 gi|326535759|gb|ADZ76546.1| DNA gyrase A [Mycobacterium neoaurum]
 gi|326535761|gb|ADZ76547.1| DNA gyrase A [Mycobacterium parafortuitum]
 gi|326535767|gb|ADZ76550.1| DNA gyrase A [Mycobacterium rhodesiae]
 gi|326535771|gb|ADZ76552.1| DNA gyrase A [Mycobacterium vaccae]
 gi|326535813|gb|ADZ76573.1| DNA gyrase A [Mycobacterium chelonae]
 gi|326535815|gb|ADZ76574.1| DNA gyrase A [Mycobacterium fortuitum]
          Length = 40

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|1041427|emb|CAA60601.1| DNA gyrase [Mycobacterium abscessus]
 gi|1041431|emb|CAA60603.1| DNA gyrase [Mycobacterium avium]
 gi|1041434|emb|CAA60604.1| DNA gyrase [Mycobacterium bovis]
 gi|1041436|emb|CAA60605.1| DNA gyrase [Mycobacterium chelonae]
 gi|1041442|emb|CAA60607.1| DNA gyrase [Mycobacterium kansasii]
 gi|1041444|emb|CAA60608.1| DNA gyrase [Mycobacterium leprae]
 gi|2815371|emb|CAA76163.1| DNA gyrase [Mycobacterium fortuitum]
 gi|2815373|emb|CAA76162.1| DNA gyrase [Mycobacterium gastri]
 gi|2815375|emb|CAA76159.1| DNA gyrase [Mycobacterium intracellulare]
 gi|2815377|emb|CAA76161.1| DNA gyrase [Mycobacterium marinum]
 gi|2815379|emb|CAA76160.1| DNA gyrase [Mycobacterium ulcerans]
 gi|31559441|emb|CAD92759.1| DNA gyrase subunit A [Mycobacterium africanum]
 gi|31559443|emb|CAD92760.1| DNA gyrase subunit A [Mycobacterium smegmatis]
 gi|31559445|emb|CAD92761.1| DNA gyrase subunit A [Mycobacterium gordonae]
 gi|31559447|emb|CAD92762.1| DNA gyrase subunit A [Mycobacterium intracellulare]
 gi|31559449|emb|CAD92763.1| DNA gyrase subunit A [Mycobacterium leprae]
 gi|31559453|emb|CAD92765.1| DNA gyrase subunit A [Mycobacterium malmoense]
 gi|31559455|emb|CAD92766.1| DNA gyrase subunit A [Mycobacterium simiae]
 gi|31559497|emb|CAD92767.1| DNA gyrase subunit A [Mycobacterium szulgai]
 gi|31559499|emb|CAD92768.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|31559501|emb|CAD92769.1| DNA gyrase subunit A [Mycobacterium ulcerans]
 gi|294478221|gb|ADE87458.1| DNA gyrase A [Mycobacterium massiliense]
 gi|313759698|gb|ADR79161.1| DNA gyrase A [Mycobacterium bolletii]
 gi|326535749|gb|ADZ76541.1| DNA gyrase A [Mycobacterium [chelonae] ATCC 14472]
 gi|326535763|gb|ADZ76548.1| DNA gyrase A [Mycobacterium phlei]
 gi|326535765|gb|ADZ76549.1| DNA gyrase A [Mycobacterium porcinum]
 gi|326535769|gb|ADZ76551.1| DNA gyrase A [Mycobacterium smegmatis]
 gi|326535811|gb|ADZ76572.1| DNA gyrase A [Mycobacterium abscessus ATCC 19977]
 gi|326535817|gb|ADZ76575.1| DNA gyrase A [Mycobacterium massiliense]
 gi|328670897|gb|AEB26324.1| DNA gyrase A [Mycobacterium massiliense]
          Length = 40

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|116282953|gb|ABJ97452.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 51

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 32/47 (68%)

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           Y A+ RMAQD++LR  L +G GNFGS DGD  AA RYTE RL   A 
Sbjct: 1   YGAMVRMAQDFTLRYPLNDGIGNFGSRDGDGAAAMRYTEARLTPIAE 47


>gi|213024348|ref|ZP_03338795.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 78

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 247 SIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            + IR  + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+
Sbjct: 1   KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 60

Query: 306 QGYRVVIELKRGASADVI 323
            G R+VIE+KR A  +V+
Sbjct: 61  DGMRIVIEVKRDAVGEVV 78


>gi|155676194|gb|ABU25360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 38/49 (77%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD+  RMAQ +SL
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSSVRMAQPFSL 49


>gi|4996107|dbj|BAA78332.1| parC [Staphylococcus epidermidis]
          Length = 52

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 40/52 (76%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
             ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN
Sbjct: 1   NTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGN 52


>gi|242095824|ref|XP_002438402.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
 gi|241916625|gb|EER89769.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
          Length = 396

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG 118
                  N K  + A    E    +H  G   + + + RMAQD+  S  + L+   G FG
Sbjct: 290 WIYNFLHNCKVAQFAAFVAECSAYHH--GKENLSNTIVRMAQDFVGSNNINLLRPNGQFG 347

Query: 119 SV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           +    G   A+ RY    L      + ++     +D+  + DG   EP  
Sbjct: 348 TRLEGGKDAASARYIFTELSSITRRIFNESDDILLDYL-SEDGQSIEPSW 396


>gi|85376453|gb|ABC70469.1| DNA topoisomerase IV subunit A [Listonella anguillarum]
          Length = 49

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           KYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP +       
Sbjct: 1   KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 49


>gi|315273175|ref|ZP_07869218.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616198|gb|EFR89280.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 42

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
          E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGL
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGL 42


>gi|31559451|emb|CAD92764.1| DNA gyrase subunit A [Mycobacterium fortuitum]
          Length = 40

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDPLVRMAQPWSLRYPLVDGQ 40


>gi|213622963|ref|ZP_03375746.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 73

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E ++
Sbjct: 1   RTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA 45


>gi|326535809|gb|ADZ76571.1| DNA gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 40

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQ 40


>gi|32453406|gb|AAP58315.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 60

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  LL D+
Sbjct: 1   PHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDI 60


>gi|242095826|ref|XP_002438403.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
 gi|241916626|gb|EER89770.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
          Length = 371

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 112/339 (33%), Gaps = 42/339 (12%)

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           + A  P +LVNG  GI  G +T IP +N  ++V           I     +E ++    P
Sbjct: 1   VFANLPMILVNGAEGIGTGWSTKIPCYNPKDIVHNLKL-----KIQGSETLEEMK----P 51

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
                 G   +KN     + S V    S I K   D+  + ++E+P +++      K+  
Sbjct: 52  WFRHFHGEVSVKNKTTKTKKSGVTYTASGIIKVV-DKTTLKISELPVKISMENYERKLKT 110

Query: 287 LV--REKRIVDIADLRDESDRQGYRVVIELKRG-----ASADVILNQLYRYTSLQSLFSV 339
            +   +K I      R  +D     ++I L         + +V L + +   +     ++
Sbjct: 111 FMDGEDKFIKSYEKKRGGND---VEIMIHLHENSENLVQANEVDLQRKFELRTSMGTSNM 167

Query: 340 NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           +++  NG   +  +   I+        E+  R  K   NK R    V  G          
Sbjct: 168 HLLDSNGIIKKNDSPEQIIVNMQQKLVEMAGRDLKMAQNKVRFIKAVRTG---------- 217

Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
              I  F  + E    +L +  +   +         D +                  +L 
Sbjct: 218 --EIKLFDMDKEGLHTKLREMQFEEFEQAKPSWENQDGAKAQEIIRGY-------DYLLF 268

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +   T +  +++  E       I E     +    L 
Sbjct: 269 MPIVNFTLM-VEELEAECEHQKKNISELKK--TKPKELW 304


>gi|207110961|ref|ZP_03245123.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
              D + ED I  E MVV++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+
Sbjct: 11  AKGDYKIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFV 70

Query: 583 VSTH 586
            +TH
Sbjct: 71  ANTH 74


>gi|541460|pir||S41421 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium smegmatis (fragment)
 gi|629195|pir||S43042 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium avium (fragment)
 gi|452278|emb|CAA54443.1| DNA gyrase subunit A [Mycobacterium smegmatis]
          Length = 36

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|452280|emb|CAA54445.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IY  L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|32453410|gb|AAP58317.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453420|gb|AAP59413.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp.
           aureus]
          Length = 55

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           HG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A 
Sbjct: 1   HGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 53


>gi|452282|emb|CAA54444.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|110340818|gb|ABG67976.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 40

 Score = 58.0 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQ
Sbjct: 1   ARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQ 40


>gi|452284|emb|CAA54446.1| DNA gyrase [Mycobacterium smegmatis str. MC2 155]
          Length = 36

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IY  L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DVSIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|70940701|ref|XP_740732.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518648|emb|CAH81733.1| hypothetical protein PC000787.04.0 [Plasmodium chabaudi chabaudi]
          Length = 300

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 114/289 (39%), Gaps = 22/289 (7%)

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y   V  +      ++G  +  ++  +     TTI    + E   +  Y++  +++G +
Sbjct: 1   AYLLNVSEIQTSLYDSKGIPISQLIKCS-----TTITGLAKYEQ--DKKYLIVCSENGKM 53

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +      F++  + G    K       +    C   ++ ++ TK G  ++FP+S++++ +
Sbjct: 54  KIINNDVFLKKKKKGIKLFKNKKN---IFFNYCNSNDNCIVGTKNGYIIQFPLSSLKI-S 109

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            +NS+G + +SL K D+V+ +    +   +           +   ++I  D  ++   + 
Sbjct: 110 KKNSLGNKCMSLKKDDKVVDLISYENNPENLKNLKIIFLSKNGHGKMIGLDEIKVQKKRG 169

Query: 778 DS-SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY----DFRISNRSGKGI----- 827
               +      ++ +   L +   LT ++K    +  +     + +      K       
Sbjct: 170 KGFKIMKFKKSKKKKNNLLNKDNKLTDTKKNISDKAQAENKQNELQQQQVDEKKTDEESG 229

Query: 828 RATDVSKINEIG-ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
              +      +G  L       +ND +I+++D   LIR  ++ ++  +R
Sbjct: 230 IVINSDSDELLGFKLYDTRTKKENDLLIMITDHAVLIRKNISLLKHKNR 278



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            + +  +++++  SE G  K  ++    +  +  K       +K N     +     N N
Sbjct: 35  AKYEQDKKYLIVCSENGKMKIINND---VFLKKKKKGIKLFKNKKN-----IFFNYCNSN 86

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           D  I+ +  G +I+ P++ ++I+ + + G    S  KD++VV +
Sbjct: 87  DNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMSLKKDDKVVDL 130


>gi|30100900|gb|AAP21087.1| GyrA [Mycobacterium tuberculosis]
          Length = 36

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IY +L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYHSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|32453408|gb|AAP58316.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 55

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 38/53 (71%)

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           HG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A 
Sbjct: 1   HGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 53


>gi|32453412|gb|AAP58318.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           G++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A 
Sbjct: 1   GDSSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|32453416|gb|AAP58320.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 53

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           G++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A 
Sbjct: 1   GDSSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|3660560|dbj|BAA33440.1| This sequence corresponds to the amino acid positions 54 to 104 of
           E.coli parC gene [Enterococcus faecium]
          Length = 49

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ++K + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  G
Sbjct: 1   YDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHG 49


>gi|939957|emb|CAA51386.1| gyrA [Mycobacterium tuberculosis H37Rv]
          Length = 36

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IYD+L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|309807643|ref|ZP_07701585.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169109|gb|EFO71185.1| conserved domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 76

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 +E Q  AI+ L+L RLT    + + +E   L   I + LDI+++++RL  +I +
Sbjct: 1   MNNYSFTEKQAEAIVYLQLYRLTNTDVNQLLSEKKQLEDNILDYLDIINNKNRLEAVIVK 60

Query: 504 ELLSVKDELD 513
           E   VK  LD
Sbjct: 61  EFEDVKKSLD 70


>gi|32453414|gb|AAP58319.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453418|gb|AAP58321.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A 
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAE 52


>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
 gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
          Length = 713

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           ++  + +SI+D +    + +++     R+IP++ DG KP  R+ILF   + 
Sbjct: 637 DQRPSEISISDFINKELILFSM-ADNFRSIPNVLDGFKPGQRKILFTCFKK 686


>gi|133853638|gb|ABO39037.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IY AL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYYALVRMAQDFSMRDPLI 37


>gi|133853611|gb|ABO39036.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IY+AL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYNALVRMAQDFSMRDPLI 37


>gi|6166255|gb|AAF04746.1| DNA gyrase subunit A [Bacteroides fragilis]
          Length = 52

 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+          +SLR +L++G
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVLQHHRPHGAAFSLRYMLVDG 52


>gi|167949303|ref|ZP_02536377.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 79

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
               L S+ RL  +I++E+ +  +     RR+ IVE      + + D    E + V +S 
Sbjct: 10  LQKTLGSKQRLRTLIRKEIEADAERFGDERRSPIVERAAAEALSETDLSPSEPVTVVLSE 69

Query: 545 LGYVK 549
            G+V+
Sbjct: 70  KGWVR 74


>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
          Length = 757

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           H +            ++  D +    + ++ +    R+IP L DGLKP  R++LF   + 
Sbjct: 696 HGLPEQFLYGTATKHLTYNDFINKELILFSNS-DNERSIPSLVDGLKPGQRKVLFTCFKK 754

Query: 64  G 64
            
Sbjct: 755 K 755


>gi|133853668|gb|ABO39038.1| GyrA [Brucella abortus]
          Length = 37

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+ +IYDAL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDVSIYDALVRMAQDFSMRDPLI 37


>gi|213051496|ref|ZP_03344374.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 70

 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++EI +  R T+GV++  TA+DE VV ++R+ E    +E ++
Sbjct: 1   MSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA 42


>gi|169837440|ref|ZP_02870628.1| DNA gyrase, A subunit [candidate division TM7 single-cell isolate
           TM7a]
          Length = 57

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 588 SVLFFS-SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
            +LFF+ ++G V++ K + +P  S QA+G A +N+L L   E+IT I+ F   +S
Sbjct: 2   WLLFFNLTVGRVFRLKAYEVPAASLQAKGVAAVNLLQLQPEEKITAIIKFDCYKS 56


>gi|167946604|ref|ZP_02533678.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           +LDDL K+TVDF PNYD S  EP VL AR PN+L+NG  GI
Sbjct: 1   MLDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGI 41


>gi|133853699|gb|ABO39039.1| GyrA [Brucella abortus]
          Length = 37

 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IYDAL RMA D+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYDALVRMAXDFSMRDPLI 37


>gi|297845356|ref|XP_002890559.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336401|gb|EFH66818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 59

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG-PDFPTGAVILG 233
           MATNIP HNLGE+V+   A+I NP+  L  L+E +   PDFPTG  I+G
Sbjct: 1   MATNIPPHNLGELVNVLCALIHNPEATLQELLEYMPPAPDFPTGGTIMG 49


>gi|4140432|gb|AAD04051.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 55

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           NFGS+DGDP AA RYTE RL  +A FLL+DL KDTVD  PNYD +  EPVV  ++
Sbjct: 1   NFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSK 55


>gi|10444196|gb|AAG17769.1| gyrase subunit A [Methylobacterium extorquens AM1]
 gi|10444198|gb|AAG17770.1| gyrase subunit A [Methylophilus methylotrophus]
 gi|10444200|gb|AAG17771.1| gyrase subunit A [Methylobacillus sp. SK1]
          Length = 33

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 28/33 (84%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           +GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQ
Sbjct: 1   IGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQ 33


>gi|166890|gb|AAA32877.1| topoisomerase II [Arabidopsis thaliana]
          Length = 88

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 91  AAIYDALARMAQDW----SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
            ++  A+  MAQD+    ++ LLL  GQ    +  G   A+ RY   +L      L    
Sbjct: 1   QSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKD 60

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
               +D   N DG   EP       P VL
Sbjct: 61  DDLLLD-YLNEDGQRIEPTWYMPIIPTVL 88


>gi|284098501|ref|ZP_06385898.1| hypothetical protein POR_0494 [Candidatus Poribacteria sp. WGA-A3]
 gi|283830519|gb|EFC34700.1| hypothetical protein POR_0494 [Candidatus Poribacteria sp. WGA-A3]
          Length = 57

 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            V  +R   R  +GV +    + +RVV V ++ ES + +E+
Sbjct: 1   KVEALRDIGRNAQGVRLIDMEESDRVVDVAKLAESAVDEES 41


>gi|332141549|ref|YP_004427287.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551571|gb|AEA98289.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 80

 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
             ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE+KR  SA+V+LN LY   S +  +
Sbjct: 20  HRLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVKRNESAEVLLNHLYAIPSFKRYW 79


>gi|83416335|gb|ABC18203.1| DNA gyrase subunit A [bacterium Ad#39A]
 gi|83416337|gb|ABC18204.1| DNA gyrase subunit A [bacterium Ad#39B]
 gi|83416339|gb|ABC18205.1| DNA gyrase subunit A [bacterium Ad#43]
 gi|83416341|gb|ABC18206.1| DNA gyrase subunit A [bacterium Ad#46]
 gi|83416343|gb|ABC18207.1| DNA gyrase subunit A [bacterium BA#3]
 gi|83416347|gb|ABC18209.1| DNA gyrase subunit A [bacterium CP#9]
 gi|83416349|gb|ABC18210.1| DNA gyrase subunit A [bacterium CP#27]
 gi|83416351|gb|ABC18211.1| DNA gyrase subunit A [bacterium CP#41]
 gi|83416353|gb|ABC18212.1| DNA gyrase subunit A [bacterium CP#58]
 gi|83416355|gb|ABC18213.1| DNA gyrase subunit A [bacterium CP#65]
 gi|83416357|gb|ABC18214.1| DNA gyrase subunit A [bacterium CP#71]
 gi|83416363|gb|ABC18217.1| DNA gyrase subunit A [bacterium Den#20]
 gi|83416367|gb|ABC18219.1| DNA gyrase subunit A [bacterium KC1#4]
 gi|83416369|gb|ABC18220.1| DNA gyrase subunit A [bacterium KC1#5]
 gi|83416371|gb|ABC18221.1| DNA gyrase subunit A [bacterium KC1#8]
 gi|83416373|gb|ABC18222.1| DNA gyrase subunit A [bacterium KC1#11]
 gi|83416375|gb|ABC18223.1| DNA gyrase subunit A [bacterium PP#26A]
 gi|83416377|gb|ABC18224.1| DNA gyrase subunit A [bacterium PP#26B]
 gi|83416379|gb|ABC18225.1| DNA gyrase subunit A [bacterium PP#47]
 gi|83416381|gb|ABC18226.1| DNA gyrase subunit A [bacterium PP#50]
 gi|83416383|gb|ABC18227.1| DNA gyrase subunit A [bacterium PP#59]
 gi|83416385|gb|ABC18228.1| DNA gyrase subunit A [bacterium PP#67]
 gi|83416389|gb|ABC18230.1| DNA gyrase subunit A [bacterium Re#27]
 gi|83416393|gb|ABC18232.1| DNA gyrase subunit A [bacterium Re#38A]
 gi|83416397|gb|ABC18234.1| DNA gyrase subunit A [bacterium Re#60]
 gi|83416401|gb|ABC18236.1| DNA gyrase subunit A [bacterium Re#70B]
 gi|83416403|gb|ABC18237.1| DNA gyrase subunit A [bacterium Va#12]
 gi|83416405|gb|ABC18238.1| DNA gyrase subunit A [bacterium Va#23]
 gi|83416407|gb|ABC18239.1| DNA gyrase subunit A [bacterium WAT#4]
          Length = 36

 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416333|gb|ABC18202.1| DNA gyrase subunit A [bacterium Ad#33]
          Length = 36

 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRIPLVDSNGNFGSPGNDPA 36


>gi|197111784|gb|ACH43047.1| ParC subunit A of topoisomerase IV [Enterococcus faecium]
          Length = 51

 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           ++K + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE
Sbjct: 2   YDKGFGKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIE 47


>gi|83416345|gb|ABC18208.1| DNA gyrase subunit A [bacterium BA#39]
          Length = 36

 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416361|gb|ABC18216.1| DNA gyrase subunit A [bacterium Cu#22]
          Length = 36

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DTSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|207111500|ref|ZP_03245662.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 46

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           + G +Y  KV+++P  S  A GKA++N++SL   E+I   +   + 
Sbjct: 1   NKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKDF 46


>gi|83416365|gb|ABC18218.1| DNA gyrase subunit A [bacterium Kar#17]
          Length = 36

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYDAL R+AQ WS+RL L++  GNFGS   DP 
Sbjct: 1   DTSIYDALVRLAQPWSMRLPLVDSNGNFGSPGNDPA 36


>gi|83416359|gb|ABC18215.1| DNA gyrase subunit A [bacterium Cu#20A]
          Length = 36

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPA 36


>gi|49425337|gb|AAT66029.1| DNA topoisomerase IV subunit A [Corynebacterium amycolatum]
          Length = 47

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DP A  RYTE +L 
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPAA-MRYTEAKLS 47


>gi|83416387|gb|ABC18229.1| DNA gyrase subunit A [bacterium PS#22]
          Length = 36

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IY AL R+AQ W++R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYVALVRLAQPWTMRMPLVDSNGNFGSPGNDPA 36


>gi|75763034|ref|ZP_00742824.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489481|gb|EAO52907.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 125

 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           + L   +  ++ V+++G  KR  + +   S R+ +G+      K N    +V +  V D+
Sbjct: 16  KPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVRDD 74

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + + + ++K  +  +     R   R + G ++        VV
Sbjct: 75  ELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 116


>gi|83416399|gb|ABC18235.1| DNA gyrase subunit A [bacterium Re#70A]
          Length = 36

 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+  ++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRMPHVDSNGNFGSPGNDPA 36


>gi|116489838|gb|ABJ98822.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 34

 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS 34


>gi|32481438|gb|AAP84065.1| gyrase [Enterococcus casseliflavus]
          Length = 39

 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
          L+GM ++GV  +K + K ARI G+VMGKYHPHG++AIY+
Sbjct: 1  LYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYE 39


>gi|83416395|gb|ABC18233.1| DNA gyrase subunit A [bacterium Re#58]
          Length = 36

 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDALAR+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALARLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|33321935|gb|AAQ06687.1|AF496028_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 43

 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            L ++I +  DIL+   R+  II  ELL ++      RRT+I 
Sbjct: 1   ELLVKIADYKDILAKPERIDQIIYDELLDIQKRFGDKRRTQIT 43


>gi|123386293|ref|XP_001299247.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121880048|gb|EAX86317.1| hypothetical protein TVAG_029390 [Trichomonas vaginalis G3]
          Length = 794

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 94/272 (34%), Gaps = 19/272 (6%)

Query: 253 VSHIEKTSGDREQIVVTEIP-YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           V +IE      ++    EI  Y +      + I EL ++  I      + E+       V
Sbjct: 499 VENIEDALRKEQKSREIEITDYTLKNINYEKTIEELKKKYYISQKQVSKLENTIHELNRV 558

Query: 312 --IELKRGASADVILNQLYRYTSLQSLFSVNM--------VALNGYKPERFTLIGILKAF 361
             ++ +   + D+++++L +          N           +N YK +   +   L   
Sbjct: 559 NKLKDQDLKNKDILISELNKKIEGSVRQVANSKEDNAKLAQKINYYKKKVTIINDCLNEN 618

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
            + + +  +      L+K  D      G   A     +     +      TA++      
Sbjct: 619 RSLKSQNEI------LSKKVDTILTQNGTLEAQLTKFKEAFDQQNKKYITTAKKTADLEV 672

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD--IRNELNS 479
                 K    L  D + ++       +  +Q  ++ +  + + T     +  +  E N 
Sbjct: 673 QIEKLSKKNAILEKDLASSVSLSEKQKIEIIQVTSLRDEWMGKSTKFDELNQSLIKENNE 732

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
           L   I+    ++ S ++ + I+KQ + ++K E
Sbjct: 733 LKATIESNNSVIESTTKQIEILKQTVENLKKE 764


>gi|169842194|ref|ZP_02875299.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 61

 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           ++++Y A+ RMAQD+++R  LI+G GNFG
Sbjct: 33  DSSVYGAMVRMAQDFNMRYELIDGHGNFG 61


>gi|70990566|ref|XP_750132.1| mRNA splicing factor RNA helicase (Prp16) [Aspergillus fumigatus
           Af293]
 gi|66847764|gb|EAL88094.1| mRNA splicing factor RNA helicase (Prp16), putative [Aspergillus
           fumigatus Af293]
 gi|159130613|gb|EDP55726.1| mRNA splicing factor RNA helicase (Prp16), putative [Aspergillus
           fumigatus A1163]
          Length = 915

 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                AG     + G+   +GD  ++M +    +  Y     + +H+       S  ++ 
Sbjct: 123 EATTMAGTALGNIMGVKEDEGDSAVAMPV----EDTYRSGNKFAQHLKKDEGGQSSFSKS 178

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T  +    +      E    +    Q I+ V E G GK T    F +            
Sbjct: 179 KTLREQREYLPAFAVREELLRVIRDNQVIVVVGETGSGKTTQLTQF-LHEDGYSKYGIIG 237

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
            ++   + A+     V++  ++ L ++ G  IR  
Sbjct: 238 CTQPRRVAAMSVAKRVSEEMEVDLGAEVGYAIRFE 272


>gi|119497007|ref|XP_001265274.1| mRNA splicing factor RNA helicase (Prp16), putative [Neosartorya
           fischeri NRRL 181]
 gi|119413436|gb|EAW23377.1| mRNA splicing factor RNA helicase (Prp16), putative [Neosartorya
           fischeri NRRL 181]
          Length = 912

 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                AG     + G+   +GD  ++M +    +  Y     + +H+       S  ++ 
Sbjct: 123 EATTMAGTALGNIMGVKEDEGDSAVAMPV----EDTYRSGNKFAQHLKKDEGGQSSFSKS 178

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T  +    +      E    +    Q I+ V E G GK T    F +            
Sbjct: 179 KTLREQREYLPAFAVREELLRVIRDNQVIVVVGETGSGKTTQLTQF-LHEDGYSKYGIIG 237

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
            ++   + A+     V++  ++ L ++ G  IR  
Sbjct: 238 CTQPRRVAAMSVAKRVSEEMEVDLGAEVGYAIRFE 272


>gi|83416391|gb|ABC18231.1| DNA gyrase subunit A [bacterium Re#30]
          Length = 36

 Score = 45.7 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++   NFG    DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNDNFGLPGNDPA 36


>gi|17553272|ref|NP_497935.1| SMC (structural maintenance of chromosomes) family member (smc-4)
            [Caenorhabditis elegans]
 gi|29427679|sp|Q20060|SMC4_CAEEL RecName: Full=Structural maintenance of chromosomes protein 4;
            Short=SMC protein 4; Short=SMC-4
 gi|3876724|emb|CAA86336.1| C. elegans protein F35G12.8, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1549

 Score = 45.3 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 78/219 (35%), Gaps = 10/219 (4%)

Query: 293  IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            I  +       +++  +V ++ K       I+ +L +        +  + A       + 
Sbjct: 845  IETLKKTIANQEKEAAKVKVDAKTLEDKQKIVEELEKKRDELGEEAAKVKARQAEIQSKL 904

Query: 353  T--LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
                  +++      +E + +R K   + A++ A++           + + R  +     
Sbjct: 905  DGIFKELVQCHRDEAKESLQKRQKLEKDIAKETANISNSGRNIAKCDENISRHDKDIEKM 964

Query: 411  ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            +    ELM+++ +  ++K   + ++     I         ++QT+     +         
Sbjct: 965  KKKCEELMEKAIDDEEVKSKKETVERFEKQIK--------KLQTKGEEMTKKQSELSAAE 1016

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
              +  EL      IKE  + + +    +  I+++L ++K
Sbjct: 1017 TKLEGELKKCSEGIKELKESMLADRLKVEDIEKKLAALK 1055


>gi|316978493|gb|EFV61475.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis]
          Length = 1819

 Score = 44.9 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 107/327 (32%), Gaps = 15/327 (4%)

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD----- 295
           Y   R     R  + +EK   ++ Q +   +  + ++  +++  +     KRI       
Sbjct: 186 YHRKRDIAAKRRAAKMEKEEAEKYQKLKDSVAEKQSRYYLMKLFSNDRESKRIFGEMNGK 245

Query: 296 ------IADLRDESDRQGY-RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
                 IA    E +     R  +  K     + +  Q+Y           N   +   K
Sbjct: 246 HGEQSRIATKCSEVEEVLKERRKVYSKVTREVNKLEQQIYEMVQFLLPIGKNESEITREK 305

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P    +   ++      E           N A  +  V+    + +   +E         
Sbjct: 306 PSFIKVKENVRHSERKLEAFHKAFEAARKN-AERQQEVIRQFEVQLKEANEQRDAFEAQL 364

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E+  + L   S   +    L   +     +I  +  +   E Q    L     R  G 
Sbjct: 365 TQESESQGLQLDSEQLAQYNSLKGEVVRQCASIQQELDVLAREQQMDQELLDNDKRCNGE 424

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR--RTRIVEGLLD 526
               I+ + + L    K    ++ +       I+++  S++   D  R  +TR+ + +++
Sbjct: 425 FCQKIKQKESELEALKKRLEKLVDTIKNTENEIEEQRSSLRSTEDEVRTAKTRLEQVIVE 484

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPL 553
           +ED +  + +  V +  +   VK+  L
Sbjct: 485 VEDVNRQLNDANVDSSENSRIVKKQEL 511


>gi|167508979|gb|ABZ81624.1| SiM protein [Streptococcus iniae]
 gi|167508989|gb|ABZ81632.1| SiM protein [Streptococcus iniae]
 gi|167508993|gb|ABZ81635.1| SiM protein [Streptococcus iniae]
 gi|193878330|gb|ACF25917.1| SimA [Streptococcus iniae]
          Length = 521

 Score = 44.9 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 15/255 (5%)

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK-YLLNK--ARDRAHV 386
            T L+++ S N       +  +  L    +     +        +   L K  A   A +
Sbjct: 228 QTELENIDSENQSLSTANEQLKADLEQAARELDTLQSSYYTVENEKAELQKQLAEKDAKI 287

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
               A        V  + +     +    E        ++++  +         +     
Sbjct: 288 AELEANNTELTATVADLTKALEAAKKEAEEKPALKAKVAELEKALAEAKGLGTKVAELEK 347

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-----------ECLDILSSRS 495
             L + Q  A         T    + ++ E   L   I+           +   +L+ + 
Sbjct: 348 -DLEKAQAEAKDLETKLAETKAELEKVQAEKAELEATIEKMKKEHAEELDKLNALLADKE 406

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+  + +E+ ++K + D        E     E+ + + +E        +G  K +  + 
Sbjct: 407 KLVEALNKEIEALKKDFDEKSNHSAQEKAKFQEELERLKKELAAKINMPMGNTKGMANAA 466

Query: 556 YRAQRRGGKGRSGVV 570
             AQ     G++  V
Sbjct: 467 GNAQTPANNGQNNAV 481


>gi|32481442|gb|AAP84067.1| topoisomerase [Enterococcus casseliflavus]
          Length = 38

 Score = 44.9 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/38 (52%), Positives = 30/38 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           A+  G +MG +HPHG+++IY+A+ RM+QDW LR + IE
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQIXIE 38


>gi|167508985|gb|ABZ81629.1| SiM protein [Streptococcus iniae]
          Length = 522

 Score = 44.9 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 15/255 (5%)

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK-YLLNK--ARDRAHV 386
            T L+++ S N       +  +  L    +     +        +   L K  A   A +
Sbjct: 229 QTELENIDSENQSLSTANEQLKADLEQAARELDTLQSSYYTVENEKAELQKQLAEKDAKI 288

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
               A        V  + +     +    E        ++++  +         +     
Sbjct: 289 AELEANNTELTATVADLTKALEAAKKEAEEKPALKAKVAELEKALAEAKGLGTKVAELEK 348

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-----------ECLDILSSRS 495
             L + Q  A         T    + ++ E   L   I+           +   +L+ + 
Sbjct: 349 -DLEKAQAEAKDLETKLAETKAELEKVQAEKAELEATIEKMKKEHAEELDKLNALLADKE 407

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L+  + +E+ ++K + D        E     E+ + + +E        +G  K +  + 
Sbjct: 408 KLVEALNKEIEALKKDFDEKSNHSAQEKAKFQEELERLKKELAAKINMPMGNTKGMANAA 467

Query: 556 YRAQRRGGKGRSGVV 570
             AQ     G++  V
Sbjct: 468 GNAQTPANNGQNNAV 482


>gi|315638449|ref|ZP_07893626.1| delta subunit superfamily DNA polymerase III [Campylobacter
           upsaliensis JV21]
 gi|315481440|gb|EFU72067.1| delta subunit superfamily DNA polymerase III [Campylobacter
           upsaliensis JV21]
          Length = 320

 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 280 MLEKIAELVREKRIVDIADLRD------ESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           +LE   E  ++  +  I +          + ++G  ++    +  + ++  N L      
Sbjct: 103 LLELYDENAKQSELEKIFENHFARFFKISNSKEGIELLAMKAKELNVEITHNALITLF-- 160

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
              F  N+        +   L         +   + + R     +K     ++   L   
Sbjct: 161 -VSFDENLYLAASELNKFVDLKVDENIIKQYCYSLALVRFDDFFDKLLKTRNIKEELEKI 219

Query: 394 VANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG-TMYLSE 451
           + N +E+  I    S      +  +  + +   D KDL+             G    L  
Sbjct: 220 LENFNEIALINSLSSAFYRLFKITIYAKIYGKIDFKDLLGYTPPPQVGQALSGQAFKLDL 279

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            Q +AI  L L     +  +   ++   L   + E   IL 
Sbjct: 280 KQYKAIFNLLLKSEYEIKTNSKLSKKEFLLANLLELQRILK 320


>gi|225460283|ref|XP_002279002.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1195

 Score = 44.9 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 54/392 (13%), Positives = 127/392 (32%), Gaps = 50/392 (12%)

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTL 354
           DL    +     +VI  K  A++   LN+L +           ++ +  +      R  L
Sbjct: 64  DLSRAIEESKIFIVIFSKNYANSRWCLNELLKIIESMEKEGKIVLPIFYHVNPSDVRKQL 123

Query: 355 IGILKAFVAFREEVVVRRT------KYLLNKARDR--AHVLVGLA-IAVANLDEVVRIIR 405
                AF    ++    +       +  L+KA +    H+        +  + + +    
Sbjct: 124 GSYGDAFSNHEKDADEEKKARIQKWRTALSKASNLSGWHIDEQYETNVLKEITDDIIRRL 183

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ-TRAI---LELR 461
               P    + ++  S++   +K L+    +    +G  G   + +     AI   L  +
Sbjct: 184 NHDQPLNVGKNIVGMSFHLEKLKSLMKKKFNEVCVVGICGIGGIGKTTVAMAIYNELSNQ 243

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
               + L +   R+E ++L ++ +   DIL  +S  L  I + +  +K  L + R   + 
Sbjct: 244 YDGSSFLRKVKERSERDTLQLQHELLQDILRGKSLKLSNIDEGVKMIKRSLSSKRVLVVF 303

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           + + +++  + +  E           +     ++  AQ           + +E+ +    
Sbjct: 304 DDVDNLKQLEYLAEEQGWFGAKSTIIITTRDKNLL-AQYGVNIEYEVTTLNEEEAIELF- 361

Query: 582 IVSTHTSVLFFSSL--GFVYKEKVWRLPIGSPQARGKALI-------------------- 619
                 S+  F       V ++  + +      A+G  L                     
Sbjct: 362 ------SLWAFRQNLPNKVDQDLFYEVV---RYAKGLPLALKVLGSNFFDKKTKEEWKSA 412

Query: 620 -NILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              L  +  ERI +++    D     +  +  
Sbjct: 413 LEKLKKSSDERIYSVLRTSYDGLDSVDKDIFL 444


>gi|47216359|emb|CAG02417.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1342

 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 77/250 (30%), Gaps = 9/250 (3%)

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+    + + +    +   + +    +  +  L +        S  +  +N        
Sbjct: 248 KDLIKSEEMNSKYQRDIKEAMCQKEDMEERIVTLEKRYLSAQRESTTVHDINDKLENELA 307

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
                   +  +   +  R +    K +        L    A L + +  +  +     +
Sbjct: 308 NKEAFLRQMEEKNRQLQERLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGS 367

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI-----LELRLARLTGL 468
             E   R       +   +L+  S    GS  + + S  + R +     L  RL+     
Sbjct: 368 IEE-RMRHLECQLEEKNQELLRVSHGGGGSTVSRFGSSRKRRTLASSTWLLTRLSDPQAR 426

Query: 469 GRDDIRNELNS-LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
            R+ +  E N  L   +   L+   S  RL   +K+ + ++++++  PR     E  L  
Sbjct: 427 QREKMNEEHNKRLSDTVDRLLN--ESNERLQLHLKERMAALEEKVGKPRAAPAAEADLRP 484

Query: 528 EDEDCIVRED 537
                   + 
Sbjct: 485 PLAPAEPPDP 494


>gi|289810787|ref|ZP_06541416.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 229

 Score = 44.5 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 116 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 171

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIVD 904
           ++ ++  G ++  PV+ +   S+  KG  I +         D+ +  +  +  ++  D
Sbjct: 172 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAEAAKGDDGLAHLYVLPPTKHSD 228


>gi|169836390|ref|ZP_02869578.1| hypothetical protein cdivTM_04680 [candidate division TM7
           single-cell isolate TM7a]
          Length = 34

 Score = 44.5 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKG 826
              LT++E+G+GKRT   ++R+ +R GKG
Sbjct: 1   MRFLTITEEGYGKRTKLSEYRLQSRGGKG 29


>gi|213424003|ref|ZP_03356983.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 62

 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           R T+GV++  TA+DE VV ++R+ E    +E ++
Sbjct: 1   RNTQGVILIRTAEDENVVGLQRVAEPVDDEELDA 34


>gi|67462340|ref|XP_647836.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56463300|gb|EAL42450.1| hypothetical protein EHI_128900 [Entamoeba histolytica HM-1:IMSS]
          Length = 593

 Score = 44.5 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 96/309 (31%), Gaps = 34/309 (11%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA-MLEKIAEL 287
            ++ G   I   Y  GRG           +   D ++I    + Y V K   ++EK    
Sbjct: 120 GLVRGFIPIYGQYEAGRGCYYAVSRMLYSEVQEDNDRIH--RLAYHVYKTKELIEKYGSE 177

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           +R  +I  I   ++ + +  Y   I      S   + ++L+   S           L  +
Sbjct: 178 IRSGKICAICIEKNFNGKSEY---ITSCDDKSYQKLESKLFEIMSSYKNIDEKFNDLKRF 234

Query: 348 KPERFTLIG-ILKAFVAFREEVVVRRTKYLLNKARDRA-------------------HVL 387
                  I   L  +   +   V+ R  Y L +  +                      + 
Sbjct: 235 LYRCENNIQPTLDEWRRLQFCFVINRVNYYLTRQEELLNDKSYEELKTMTILRSRLNQLA 294

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDLIDDSSYTIGS--D 444
           +          E++  I              ++ +  +S +++    ID     +     
Sbjct: 295 IKYKHLYLTNTEILLGITMKRCKILVNHRECKKIFIESSSVREFYKKIDKRLNALFQILT 354

Query: 445 GTMYLSEVQTRAILELR---LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                SE+    I+E              D ++ E++ L  + K+ L   ++   +  ++
Sbjct: 355 NKYSFSELTLENIIETAQSLKLDNNQDLIDKMKKEISELENKRKKLLGDAATE--VGKVV 412

Query: 502 KQELLSVKD 510
            Q++  + D
Sbjct: 413 IQKVEDISD 421


>gi|198436429|ref|XP_002123235.1| PREDICTED: similar to nonmuscle myosin heavy chain [Ciona
            intestinalis]
          Length = 1953

 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 11/214 (5%)

Query: 345  NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             G   E+  +   +K      +E    R K  L K          L      +DE + ++
Sbjct: 936  QGMMQEKKKMQTNIKDLEEQLDEEEAARQKLQLEKVT--------LDAKCKKMDEDLNLL 987

Query: 405  RFSPNP-ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
              + +  +  R+ L +R           +        +       +S++Q R   E +L 
Sbjct: 988  EDAQSKLQRERKALEERVNELEGTLGDEEEKAKMLSKLKHKNESVISDLQERLKKEEKLR 1047

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR--RTRIV 521
            +     +  +  E+  L  +I +    L            EL +++D+ D  +  R+++ 
Sbjct: 1048 QELEKIKRQLEAEIAELREQIADLQLQLEELRVQNQRKDDELAALQDKFDQEQTARSQLA 1107

Query: 522  EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +   ++++++  V ED+    S     ++    +
Sbjct: 1108 KNHRELQNQNAEVLEDLEQERSQRNKAEKQKRDL 1141


>gi|327399397|ref|YP_004340266.1| hypothetical protein Hipma_1246 [Hippea maritima DSM 10411]
 gi|327182026|gb|AEA34207.1| protein of unknown function DUF164 [Hippea maritima DSM 10411]
          Length = 242

 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETARRELMQRSWNASDIKDLIDLIDDSSY 439
           ++ A + + +    A  D+++ +++   N  E A+ EL + + +    ++L++   ++  
Sbjct: 16  KEIAELELEVKRMQAKEDKIIEVVQIKENQIEDAKAELDKLNKDLEFEENLLNETSETLN 75

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            +        +E Q +A+       +    +  +  ++ SL  EI      L+  +    
Sbjct: 76  KLELKLNSVSTEKQMQAVNTEID--MAKTNKMMLEKKIESLKEEIHLKEKGLAELNDRYE 133

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMED 529
            +K+ L   +D+ +  RR  I + +  +  
Sbjct: 134 QLKRTLKESQDKFNI-RRKEITDQIAKINT 162


>gi|123497158|ref|XP_001327118.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910043|gb|EAY14895.1| hypothetical protein TVAG_380050 [Trichomonas vaginalis G3]
          Length = 2499

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 1/174 (0%)

Query: 339  VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
             N   ++ Y+ +  TL  +L   V      V   T         ++ V    A      +
Sbjct: 1673 TNSSTISMYQTQIATLKELL-HHVDNPASPVDTVTAIRSEIITLQSMVDTMRADRDMQKN 1731

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            +V+ +       E A R+  +R  N    K+ ++                L  ++   + 
Sbjct: 1732 KVIELEDQISAKEEAMRQDTERYENLLQEKEALEKQVRKQDEQALFHESDLETMKAEKLA 1791

Query: 459  ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
              +L     L  ++       L  +IKE  D + ++ + +G +K EL  ++ + 
Sbjct: 1792 NEQLGMKNRLQLEEAIGNNEKLLTKIKELEDTIRNQKKEIGQVKNELEDLQIKY 1845


>gi|83318125|ref|XP_731459.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491511|gb|EAA23027.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 249

 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 81/201 (40%), Gaps = 19/201 (9%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           C   ++ ++ TK G  ++FP+S++++ + +NS+G + I+L K D+VI +    +   +  
Sbjct: 31  CNSNDNCIVGTKNGYIIQFPLSSLKI-SKKNSLGNKCINLKKDDKVIDLVSYENNLENLK 89

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                    +   ++I  D  ++   +          + + ++          +++    
Sbjct: 90  NIKIIFLSKNGHGKMIGLDEIKVQKKRGKGFKIMKFKKGKKKKNNNLPNKDNKLND---I 146

Query: 810 KRTSSYDFRISNR--------------SGKGIRATDVSKINEIG-ALVAVFPVNDNDQII 854
           K+  S   +  N+                K    T+      +G  L       +ND +I
Sbjct: 147 KKDISDKIQNQNKQNELQLPEQQEYVDEKKNNIITNYDPDELLGFKLYDTRTKKENDLLI 206

Query: 855 LVSDKGTLIRVPVNEIRIASR 875
           ++SD   LIR  ++ ++  +R
Sbjct: 207 MISDHAVLIRKNISLLKQKNR 227



 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N ND  I+ +  G +I+ P++ ++I+ + + G    +  KD++V+ +
Sbjct: 31  CNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCINLKKDDKVIDL 78


>gi|170064497|ref|XP_001867550.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881880|gb|EDS45263.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 540

 Score = 43.8 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 66  EWNKKYVKCARISGEVMG-KYHPHGNAAIYDALARMAQDW--SLRLLLIEG--QGNFGSV 120
             +K+ VK  +++G V     + HG  ++   +  + Q++  S  + L+    Q      
Sbjct: 429 RNDKREVKVTQLTGSVAEMSAYHHGEQSLCSTIVDLTQNFVSSNNINLLYPRDQFGTRLP 488

Query: 121 DGDPPAAERYTECRLQKAAHFLLD 144
                A  R+    +     + + 
Sbjct: 489 GVKDSAKPRFILTMMSALTPWKIH 512


>gi|68010286|ref|XP_670686.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486176|emb|CAI03164.1| hypothetical protein PB301073.00.0 [Plasmodium berghei]
          Length = 258

 Score = 43.8 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 79/198 (39%), Gaps = 15/198 (7%)

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           C   ++ ++ TK G  ++FP+S++++ + +NS+G + +++ K D+V+ +    +   +  
Sbjct: 42  CNSNDNCIVGTKNGYIIQFPLSSLKI-SKKNSLGNKCMNMKKDDKVVDLVSYENNSENLK 100

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDS-SVEGNISEERCQELKLKEQFILTVSEKGF 808
                    +   ++I  D  ++   +     +      ++ +     +   L  ++K  
Sbjct: 101 NLKIIFLSKNGHGKMIGVDEIKVQKKRGKGFKIMKFKKAKKNKNNLPNKDNKLNDTKKYI 160

Query: 809 GKRTSSYDFRISNR----------SGKGIRATDVSKINEIG-ALVAVFPVNDNDQIILVS 857
             +         N+            K     +      +G  L       +ND +I++S
Sbjct: 161 SDKIQIE--NKQNKLQPPEQEFVDEKKNNIIANYDPDELLGFKLYDTRTKKENDLLIMIS 218

Query: 858 DKGTLIRVPVNEIRIASR 875
           D   LIR  ++ ++  +R
Sbjct: 219 DHAVLIRKNISLLKQKNR 236



 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N ND  I+ +  G +I+ P++ ++I+ + + G    +  KD++VV +
Sbjct: 42  CNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMNMKKDDKVVDL 89


>gi|213618678|ref|ZP_03372504.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 275

 Score = 43.8 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 110 MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 165

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 166 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 201


>gi|110637995|ref|YP_678202.1| chromosome segregation protein, Smc family protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|28375463|emb|CAD66595.1| SMC protein [Cytophaga hutchinsonii]
 gi|110280676|gb|ABG58862.1| chromosome segregation protein, Smc family protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 1178

 Score = 43.4 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 97/291 (33%), Gaps = 15/291 (5%)

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           G  G+      GR   + +  + I++ + D E I V      V    + E        K+
Sbjct: 655 GSVGLFEGKRIGRAKNMEKLEADIKQITSDIENIRV------VLDTKLKEFYLLKENTKK 708

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQ-------LYRYTSLQSLFSVNMVALN 345
           +      R+ +      + ++ K+   A ++ +        L +   ++   ++N     
Sbjct: 709 LEVEELRREINLVNNEYITLKTKQEQLASMLSDNSLRREDVLEKIAKIEEDININTPLAK 768

Query: 346 GYKPERFTLIGILKA-FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             K E  +L   L      F  +      K  +    +         +     +   +  
Sbjct: 769 EGKDELESLEERLNQLNDDFSLQTTQLSNKSAVYNQENIGFHQQQNRVNSLEQEIGYKQT 828

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
            F  + E   + L +      +I+ ++D  D S   + S      S  Q       +   
Sbjct: 829 TFDQSKERIAKNLEELEIANGEIRQMVDSADVSEDELISFYKEKESIEQGVH-EAEKDYY 887

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            T +  D++  E+  +    +EC +IL +    +   K  L S+K+ L+  
Sbjct: 888 STRVRIDEVEKEVKEIRRNREECDEILVTLQNRVTETKIGLSSIKERLNVE 938


>gi|20142122|dbj|BAB88924.1| gyrase A [Bacillus cereus]
          Length = 50

 Score = 43.4 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +V  R  VV RRT + L K +DR H++ GL +A+ ++DEV+ IIR S + 
Sbjct: 1   YVDHRLTVVRRRTAHRLGKRQDRLHLVEGLLLALVDIDEVIEIIRTSDDA 50


>gi|213027129|ref|ZP_03341576.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 210

 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       ++     +++D 
Sbjct: 45  MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIK----DEHDM 100

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 101 LLAITQAGRMLMFPVDSLPQLSKG-KGNKIINIPSAE 136


>gi|124805578|ref|XP_001350479.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496602|gb|AAN36159.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 2612

 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 126/360 (35%), Gaps = 41/360 (11%)

Query: 258  KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 R+     ++    +K   +EKI   ++EK ++      D  +++ Y   I+LK  
Sbjct: 888  NLMKKRKDNFEKKVEMLSDKEKEIEKIHSQIKEKEMLVDKKKMDIEEKEKYVNSIKLKYD 947

Query: 318  ASADVILNQ--------------LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
             +   +L++              LY Y      F+  +  +   + E       ++    
Sbjct: 948  NAQKELLDKMNECITIENKCKSKLYEYDEKFGQFNKKIKEMEEREKEIDNERRNIERKEN 1007

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            F         +  LN  +++  + +      +   E  +II    N    + E +QR+  
Sbjct: 1008 FLNHTKKELEEEKLNNMKEKNELEMLKKELESLEKEKKQIIECEYNNLQNKEEEIQRNER 1067

Query: 424  ASDIK------------DLIDLIDDSSYTIGSDGTMYLSEVQTRAIL----ELRLARLTG 467
             + IK            +L++ ++     +  +    L +VQ   I     +  + +   
Sbjct: 1068 NNLIKQKELNSRMDRYNELLEDLNKKRKELEMEKMKLLDDVQEERIKFLNEKNNMQKEKE 1127

Query: 468  LGRDDIRNEL-NSLGIEIKE--------CLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
               + ++ EL     + I+E          DI  ++ +++  +++E   +KDE++  RR 
Sbjct: 1128 NEINYMKEELRKERILMIEEVEKMKVIMLEDIEKNKEKMIKNVEKENEKLKDEIEKERRN 1187

Query: 519  RIVEGLLDMEDEDCIVREDM--VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
             I     + ++    + +           G  K+      + Q   G  +  +    ++F
Sbjct: 1188 MIQNLEEEKKEFKLYLEQKYKENFENEKSGLAKKFDEENEKLQNEIGNEKRKLHKERDNF 1247


>gi|315231626|ref|YP_004072062.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP]
 gi|315184654|gb|ADT84839.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP]
          Length = 865

 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 62/176 (35%), Gaps = 14/176 (7%)

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE------LMQRSWNASDIK 428
           Y L +      +  G+      ++ ++ I + S       R+      L Q      +I 
Sbjct: 89  YELYRLDKNMLIAHGVKAVKKEVENIIGIEKDSAVNSILIRQGEITSLLDQAPAKRKEII 148

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA------RLTGLGRDDIRNELNSLGI 482
             +  ++           +     Q +  LE  +A      R     R+ ++ E+  L  
Sbjct: 149 GKLLGLEKLEKAWQFMREVIDHFEQIKNDLEKEIAEIGGELRSKSEQREKLKQEIQELKE 208

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           +IKE   IL      LG IK+EL  + ++    R   ++  L    +    V+E +
Sbjct: 209 KIKELEQILKKLEHQLGEIKRELDELNEK--EKRYNELMIELAKKTEGIKSVQEQI 262


>gi|1297319|gb|AAA98972.1| DOC1 [Homo sapiens]
          Length = 752

 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 15/204 (7%)

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV------VVRRTKYLLNKARD 382
           R        +            + T        +  +          +  T   L KA +
Sbjct: 50  RLEKELQTQTTKFHQDQDTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEE 109

Query: 383 RAH-----VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                   +  G       + EV  +I+         + L + +  + D K  ++ +   
Sbjct: 110 ELQDIKEKISKGEYGNAGIMAEVEELIKMEEQCRDLNKRLERETLQSKDFKLEVEKLSKR 169

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +      +    Q    L+  L +   +    +  EL SL + IKE   I S   + 
Sbjct: 170 IMALEKLEDAFNKSKQECYSLKCNLEKE-RMTTKQLSQELESLKVRIKELEAIESRLEKT 228

Query: 498 LGIIKQELLSVKD---ELDTPRRT 518
              +K++L  +K         R+T
Sbjct: 229 EFTLKEDLTKLKTLTVMFVDERKT 252


>gi|326935493|ref|XP_003213804.1| PREDICTED: TBC1 domain family member 25-like, partial [Meleagris
           gallopavo]
          Length = 701

 Score = 43.0 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 8/132 (6%)

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
            V  GL      L   ++ ++   +   A  +L +RS    +++  ++  +       + 
Sbjct: 55  QVEKGLREQSEELSRELQEVQSRHDALQA--QLQERSQEQEELRQRLEAAE------STQ 106

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G       Q + +LEL+        R         L   + E   +L    R   + + E
Sbjct: 107 GDTEQRLRQAQELLELQAQEHMAATRAHREQHRAELEGRVGELRALLGDAERQRELQEAE 166

Query: 505 LLSVKDELDTPR 516
             +++ EL   R
Sbjct: 167 GRALRQELKDVR 178


>gi|197294520|ref|YP_001799061.1| hypothetical protein PAa_0469 [Candidatus Phytoplasma australiense]
 gi|171853847|emb|CAM11803.1| Conserved hypothetical protein [Candidatus Phytoplasma
           australiense]
          Length = 333

 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 68/225 (30%), Gaps = 23/225 (10%)

Query: 301 DESDRQGYRVVIELKRGASADVI--LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             ++     V+ +       D    L  L + ++  S   +  +    +     ++I   
Sbjct: 105 GYNNYSLMCVIFDKGIRDKKDDFYSLENLEKMSNGASNMYIFWLKQQTFTLN--SIIEKQ 162

Query: 359 KAFVAF-REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           K      +        ++  NK     H L  L     +L   ++  +     +   ++L
Sbjct: 163 KHIKDINQRIFYRLEIEFQKNKIEKIKHKLNLLQKEKNDLINQIKSEKNYFKSQLETKKL 222

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                   +I  +    D+   ++       L   +   I +  L +     + ++ NE+
Sbjct: 223 --------EILKIQIQKDNLENSLKLKQQELLDNQKLTEIEKTNLKKEIKNIKINLDNEI 274

Query: 478 NS---LGIEIKECLDILS-------SRSRLLGIIKQELLSVKDEL 512
                   +I+E    L+       +       IK+ L    ++ 
Sbjct: 275 KENLIKNKKIEELNTQLNLLNIKFQNEKTKYQQIKENLEKKHNDY 319


>gi|171680251|ref|XP_001905071.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939752|emb|CAP64978.1| unnamed protein product [Podospora anserina S mat+]
          Length = 998

 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 9/191 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISA-IRVFAGRNSVGVRG------ISLAKGDQV 735
           E +      Q +  + + K  + V+   +   R    + +  V G      + + + D  
Sbjct: 196 EPIPAVRDAQSDMAVFSRKGSRVVKERRTQRERAKQAQEATNVAGTALGNLMGVKEEDTD 255

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            ++ I             + +HM       +    +    + +      + E+  + ++ 
Sbjct: 256 SALPIASEESGKAQNSNKFSEHMKKSEGASNFSQSKSLKEQREYLPAFAVREDLLRVIR- 314

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q ++ V E G GK T    F   +  GK +     ++   + A+     V +  ++ L
Sbjct: 315 DNQVVIVVGETGSGKTTQLAQFLYEDGYGK-VGMIGCTQPRRVAAMSVAKRVAEEMEVKL 373

Query: 856 VSDKGTLIRVP 866
            S  G  IR  
Sbjct: 374 GSTVGYAIRFE 384


>gi|257388937|ref|YP_003178710.1| chromosome segregation protein [Halomicrobium mukohataei DSM 12286]
 gi|257171244|gb|ACV49003.1| SMC domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 891

 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR-AILE 459
           V I R   + + A  +L ++     +      L +  S    +   +   E Q   A+  
Sbjct: 176 VGIGRVRDDKQGALGQLEEQIAEKEERDLYDRLNELRSQIAQTSEEIERIEGQRERAVET 235

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
              A+      ++ + EL+ L  EI E  + ++   R    I + +   K+ L + R T 
Sbjct: 236 RDDAQSIIDDHEERQAELDELEAEIDELRETIAETERERDEIDERIRDRKETL-SERETE 294

Query: 520 IVEGLLD 526
           + E + +
Sbjct: 295 LREAVAE 301


>gi|221109796|ref|XP_002165729.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1191

 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 66/237 (27%), Gaps = 2/237 (0%)

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
             + E++ +L  +K       L      +  ++    +        L +L+       + 
Sbjct: 147 ENLYEELNKLQSQKDRAHQMMLHHRQCTEELKLNQMKENHNLRYEQLKRLHTTEWENQME 206

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
                 ++  K     L    K   A  E V  +  +    +      +           
Sbjct: 207 YNKKAEMDLQKKHLLELRQRPKHLKAQEERVKKQFRETCKIQENQFKVLQKQTLANAPRE 266

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           +    I +F  +      +L  +   +         +      +     + +   Q + I
Sbjct: 267 NHQAIINKFKEDRLRKFADLGTQYEQSITDLLQKQKLCSDEKQLNELNALRVQLKQEQDI 326

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           L     R +   ++ I  EL  L   IK    +L    ++   I +   + +  L  
Sbjct: 327 LVNYQTRQSTHLKNHIDKELQELNNNIKLHKSVL--EDKIHEDIIKLQSNRQKRLLD 381


>gi|46107130|ref|XP_380624.1| hypothetical protein FG00448.1 [Gibberella zeae PH-1]
          Length = 968

 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 3/155 (1%)

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                 G     + G     GD   ++ +    DA  + +         +    S  ++ 
Sbjct: 204 EATSMTGTTLGNIMGAKEDDGDS--ALPVPAEDDAQPERKGNKFSEHLKKTDGASNFSQS 261

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T  +    +      E    +  + Q ++ V E G GK T    F   +  GK      
Sbjct: 262 KTLREQREYLPAFAVREDLLRVIRENQVVICVGETGSGKTTQLTQFLQEDGYGK-TGMIG 320

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
            ++   + A+     V +  ++ L S  G  IR  
Sbjct: 321 CTQPRRVAAMSVAKRVAEEMEVKLGSTVGYAIRFE 355


>gi|85116762|ref|XP_965113.1| pre-mRNA splicing factor ATP-dependent RNA helicase prp16
           [Neurospora crassa OR74A]
 gi|28926916|gb|EAA35877.1| pre-mRNA splicing factor ATP-dependent RNA helicase prp16
           [Neurospora crassa OR74A]
          Length = 1005

 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 1/140 (0%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + + + D   ++ I +  +A   + +        +    S  ++  +  +    +     
Sbjct: 257 MGVKEEDTDSALPIAVEEEAGKSKNMNKFSEHMKENEGASNFSQSKSLKEQREFLPAFAV 316

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E    +    Q ++ + E G GK T    F   +  GK       ++   + A+     
Sbjct: 317 REDLLRVIRDNQVVIVIGETGSGKTTQLTQFLYEDGYGK-TGMIGCTQPRRVAAMSVAKR 375

Query: 847 VNDNDQIILVSDKGTLIRVP 866
           V +  ++ L S  G  IR  
Sbjct: 376 VAEEMEVKLGSTVGYAIRFE 395


>gi|37542704|gb|AAL89796.1| gyrase A [Mycobacterium gordonae]
          Length = 100

 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I  ++         +  Y+V  T++G V+++KL+DF      G  A     + +      
Sbjct: 1   IAQVIQIR---GYTDAPYLVLGTRNGLVKKSKLTDFDSNRSGGSWAGNPARQRKAGRCGA 57

Query: 690 C-TQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGIS 728
                     +   G+ +RF  +   +   GR + GV+G+ 
Sbjct: 58  VFWPTTTCCWSRPTGESIRFSATDEALRPMGRATSGVQGMR 98


>gi|148676172|gb|EDL08119.1| RIKEN cDNA 4921504E06, isoform CRA_b [Mus musculus]
          Length = 460

 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 11/214 (5%)

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE-- 411
           L   +       ++      K    +  D   ++ G+      +++    ++ + + +  
Sbjct: 111 LCDKMLEMKRHYQQGEDIMRKSFQQQLCDAIAIIKGMYQKYFEIEDEKAALQDADDVKLN 170

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             RR+L ++     ++K+ ++L ++  +          S  +  +  EL   R       
Sbjct: 171 VLRRKLKEKEEIIKNLKNELELYEEFGFKKVDSFAKESSSPKPISEKELLDCRAENERLI 230

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR---RTRIVEGLLDME 528
            I  EL            +L      L  I  +      +L   R   R  +    L ++
Sbjct: 231 QIIAELEEESRTAINENAMLEDEVMYLKEISDQDQRTIQKLMDSRERLRYELDCEKLAIQ 290

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           D     ++D+ +        K   +S Y   +RG
Sbjct: 291 DMISRQKDDIEIKR------KFASISTYHGGKRG 318


>gi|163754567|ref|ZP_02161689.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1]
 gi|161325508|gb|EDP96835.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1]
          Length = 1141

 Score = 42.2 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 19/181 (10%)

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           + ++  L  I K      E     R K    L +      ++   +  +    E  +   
Sbjct: 516 QKQQDELKKISKEQKEKSELNFNDRKKLEKFLQRQEQNDQMMEKFSKQLQENLEDFQKEE 575

Query: 406 FSPNPETA--RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL----------SEVQ 453
              + +    +  L ++       + L++ +   +  I  +               S+  
Sbjct: 576 TKDDEDKELLKERLERQQKELEKNEKLMEELKKLAEKISEEELQEKLEELGKQQQNSKKN 635

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            + ILEL          + I+ EL  L  E +E      S+       K++   +  + +
Sbjct: 636 LQQILELTKRYYVTKKAEKIQKELQELAKEQEEL-----SKKSGDQNTKEQQEELNKKFE 690

Query: 514 T 514
            
Sbjct: 691 D 691


>gi|115491003|ref|XP_001210129.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114196989|gb|EAU38689.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1121

 Score = 42.2 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 85/261 (32%), Gaps = 24/261 (9%)

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            + E D       IE  +                L++  +   + L   + +R       
Sbjct: 535 NQHEQDLMHKDFYIEALQNQMRKTAAESAEESRKLKNTINELRMELGNLEEKRKDFEEKF 594

Query: 359 KAFVAFREEVVVRRTKYL---------LNKARD---------RAHVLVGLAIAVANLDEV 400
           +      EE+  R+T+           L +A++         +A     LA     L E+
Sbjct: 595 EDAEKSNEELSARKTELEGEITTLNNNLREAQEAHERELEKQKAEKEEALASQKQELTEL 654

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
              IR + + +TA   L  R       ++ +    +       +    L   Q     ++
Sbjct: 655 FEEIR-AEDEKTAAENLEAREKELLGQQEAMKADYEKEKQQMQESHDAL---QAEYDSKV 710

Query: 461 RLARLTGLGRDDIRNELNSLGIEIK-ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
                T    DD + EL+    +   E   + +S    +  + Q     K++L   R T 
Sbjct: 711 SELESTKTALDDKQKELDDTREQHAKEIESMKNSHEATVAEMNQRWTEEKNDL-EKRLTD 769

Query: 520 IVEGLLDMEDEDCIVREDMVV 540
            ++    +E E+  + ED +V
Sbjct: 770 KIDECAGVERENKKLEEDNLV 790


>gi|57242338|ref|ZP_00370277.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017018|gb|EAL53800.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 320

 Score = 42.2 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 280 MLEKIAELVREKRIVDIADLRD------ESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           +LE   E  ++  +  I +          + ++G  ++    +  + ++  N L      
Sbjct: 103 LLELYDENTKQSELEKIFENHFARFFKISNSKEGIELLAMKAKELNVEITHNALITLF-- 160

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
              F  N+        +   L         +   + +       +K     ++   L   
Sbjct: 161 -VSFDENLYLAASELNKFANLKVDENIIKQYCYSLALVGFDDFFDKLLKTRNIKEELEKI 219

Query: 394 VANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG-TMYLSE 451
           + N +E+  I    S      +  +  + +   D KDL+             G    L+ 
Sbjct: 220 LENFNEIALINSLSSAFYRLFKITIYAKIYGKIDFKDLLGYTPPPQVGQALSGQAFKLNL 279

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            Q +AI  L L     +  +   ++   L   + E   IL 
Sbjct: 280 KQYKAIFNLLLKSEYEIKTNSKLSKKEFLLANLLELQRILK 320


>gi|258597770|ref|XP_001348500.2| dynein-related AAA-type ATPase [Plasmodium falciparum 3D7]
 gi|255528838|gb|AAN36939.2| dynein-related AAA-type ATPase [Plasmodium falciparum 3D7]
          Length = 8105

 Score = 42.2 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 45/378 (11%), Positives = 115/378 (30%), Gaps = 46/378 (12%)

Query: 275  VNKAAMLEKIAELVREKRIVDIADLRDESDR-----QGYRVVIELKRGASADVILNQLYR 329
            ++   + EK      +  I DI       ++           I L      +    ++  
Sbjct: 1110 IDYQKLFEKKICDKNQINIDDITSCNHYDNKYKSSDHNINTEIHLDVVQDEEERNTEMNE 1169

Query: 330  YTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
                     +     NG+    +   L                 +   ++ K  ++  V 
Sbjct: 1170 LIFKFHDGILIDCIKNGHWILLDEINLAQTEILQRLQGLLDSSNKYFDIIEKGNEQIKVH 1229

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
                +       ++  IR   +    + E      N   + + I L D+++    ++  +
Sbjct: 1230 KNFRLFACMNPPIIPNIRMKKDKNIVKEEFYD---NKDVVNNDICLYDNNNNNNNNNNKI 1286

Query: 448  YLSEVQTRAILELRLA-----------------RLTGLGRDDIRNELNSLGIEIKECLDI 490
            +    Q     ++ L                  + T +  D+I  E N + + +K+ L  
Sbjct: 1287 HKIHKQIDFQNDIDLYNSTMSSGKKELAPIIRNKFTEIFVDEIL-EYNDIHMIVKDLLKN 1345

Query: 491  LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
             +S + L+G I    L +K +                   +    E+  ++ S    V+ 
Sbjct: 1346 TTSDNTLIGNITNCYLEIKKK----------------SLNNIFNTENKPISFSTRNLVRA 1389

Query: 551  VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            +  ++Y   +R  K           F+ +        +     ++   Y +  +   + +
Sbjct: 1390 IKYAIY-VNKRKFKSVQLQNAVRNGFICNFMSCLNSNNQKLMENIFKKYFKYSYEKDMDN 1448

Query: 611  PQARGKALINILSLNQGE 628
             + + K +  +L+ N+ +
Sbjct: 1449 NKNKNK-ISLVLNNNEND 1465


>gi|66803542|ref|XP_635612.1| hypothetical protein DDB_G0290503 [Dictyostelium discoideum AX4]
 gi|74896865|sp|Q54G05|LRRX1_DICDI RecName: Full=Putative leucine-rich repeat-containing protein
           DDB_G0290503
 gi|60463949|gb|EAL62112.1| hypothetical protein DDB_G0290503 [Dictyostelium discoideum AX4]
          Length = 1492

 Score = 42.2 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 52/415 (12%), Positives = 131/415 (31%), Gaps = 22/415 (5%)

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           + +  R   +   G        PP  +       Q +    L  L    V      DG+F
Sbjct: 19  KSYKNRYFSLAKNGFDLHYFESPPPKDVSFSSSTQSSTALSLGYLDIRQVTSIKKVDGNF 78

Query: 162 QEPVVLCARYPNVLVNGGGGIA---VGMATNIPTHNLGEV-VDGCVAVIDNPDIDLDALM 217
              V +  R   +       I     G+   I  H +    V     +I   D D+  L 
Sbjct: 79  VFHVEVPGRVYILRAKNDTEINYWIEGIKDAIKYHEINSSQVQVLDGLIKTKDNDIIKLR 138

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I+  +             +  +   R          IE     +++  +  +  Q++ 
Sbjct: 139 EKIKHLNEKHQESEKRYQEKEKKFEEQR---------TIEIQETTKKEQEIKSLTLQLSS 189

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
                K  E   EK +        E  ++   ++       +  +   QL    +  +  
Sbjct: 190 KDESMKSLEKQVEKLVDIEHRSEIEQTKKDNEIL-----KLTEKIKEIQLIENLNSTNDS 244

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
            VN +  +  K  + +L  I       +  +  ++ ++     + +  +           
Sbjct: 245 KVNQLLEDNIKRLQESLNEIKDENNDLQSLIDTQKQQFEKRINQYQLEIQDKENELNEMN 304

Query: 398 DEVV-RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
            + + ++  F  + + ++ +L     + +     + L+++   ++ S     L E+Q + 
Sbjct: 305 QQSLSQVKSFQQSLQQSQLDLEN---DKNQFSTKLQLVNNEIQSLKSIVDDKLKEIQLKD 361

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
               +L +   +  +     +  L   I +  + L+ +   +  + ++ +  + E
Sbjct: 362 NQLTQLNQQHEIDNNKNNQMILELNDNISKISNQLNEKDNKIQELSKQSIDKQKE 416


>gi|324500000|gb|ADY40014.1| 227 kDa spindle- and centromere-associated protein [Ascaris suum]
          Length = 1854

 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 2/171 (1%)

Query: 344 LNGYKPERFTLIGILK-AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           L   K E  +L         A +E V     +    ++ +R           A  +EV +
Sbjct: 631 LQKEKNEIMSLKQKSDMEVDALKERVRKLEKEMEKIESENRTLRESEEKARQAYKEEVNK 690

Query: 403 IIRFSPNPETARRELMQ-RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           + +     + A+ E+ + R   A+  ++  + ++ +    G D +      Q   I    
Sbjct: 691 VHQLERELQEAKAEIDELRRRLAALDQENKERLESALRGRGGDKSDIYESTQITEIRVKE 750

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           L     L  + + NE + L   ++   D L+ + R++   K ++  +K + 
Sbjct: 751 LGDKHRLDLERLENERDELARRVQLLEDELAEKQRIIDRQKTDIEDLKRQY 801


>gi|167508997|gb|ABZ81638.1| SiM protein [Streptococcus iniae]
          Length = 579

 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L++ +   E         L  K    A +  G A    ++ ++ + +  +        
Sbjct: 318 DALESSLYKVENEKTALMAQLSEKEAKIAELEAGNAELTTSVADLTKALEAAKKEVEENP 377

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L  +             ++     +       L + Q  A         T    + ++ 
Sbjct: 378 ALKAKVAELEKALAEAKGLEAKVAELEKA----LEKAQAEAKELEAKLAETKAELEKVQA 433

Query: 476 ELNSLGIEIK-----------ECLDILSSRSRLLGIIKQELLSVKDEL 512
           E   L   I+           +   +L+ + +L   + + +  +K EL
Sbjct: 434 EKAELEATIETMKKEHAEELDKLNALLADKEKLNEELNKMIADLKKEL 481


>gi|87295001|gb|ABD36913.1| putative type IIA topoisomerase [Moraxella osloensis]
          Length = 80

 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + V VS  G++        R+ +      + +  R  D         ++  V    
Sbjct: 3   PSEPVTVIVSKSGWI--------RSAKGHDVDAANMNYRSGDAYLAHAQGKSNEKVYLMD 54

Query: 594 SLGFVYKEKVWRLPIGSPQA 613
           + G  Y+     LP    Q+
Sbjct: 55  NTGRSYRIDAHALPSARGQS 74


>gi|297829356|ref|XP_002882560.1| hypothetical protein ARALYDRAFT_896967 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328400|gb|EFH58819.1| hypothetical protein ARALYDRAFT_896967 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 93

 Score = 41.8 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +     P +LVNG  GI  G    IP +N 
Sbjct: 3   SMFMPIIPTILVNGSQGIGAGWNNFIPNYNP 33


>gi|6457372|gb|AAF09499.1|AF197195_1 DNA puff protein [Trichomegalosphys pubescens]
          Length = 285

 Score = 41.8 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKA D  H    L ++  +L   + + +     +  + EL        ++K  I+ ++
Sbjct: 59  ELNKANDALH-RENLQLSEEHLQLTISLEQDEIENKGLKEELNAEECENKNLKIRIETLE 117

Query: 436 DSSYTIGSD-------------GTMYLSEVQTRAILELRLARLT----GLGRDDIRNELN 478
                   +                 L+++     L+++  +         +  +  EL+
Sbjct: 118 KKLAEAQEELKKCRQDLSDCEKEKERLTKIIADLQLQIKNLKEQLECCEADKKRLEAELD 177

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
               ++ +C   L+   +     K E+  +K+E+   RR  + E     ED
Sbjct: 178 ECRKKLNDCEKRLADCEKESAQFKAEIEKLKEEI---RR--LEEKERKCED 223


>gi|242095808|ref|XP_002438394.1| hypothetical protein SORBIDRAFT_10g016324 [Sorghum bicolor]
 gi|241916617|gb|EER89761.1| hypothetical protein SORBIDRAFT_10g016324 [Sorghum bicolor]
          Length = 69

 Score = 41.8 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 100 MAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           MAQD+  S  + L+   G FG+    G   A+ RY    L      + ++     +D+  
Sbjct: 1   MAQDFVGSNNINLLRPNGQFGTKLEGGKDAASARYIFTELSSITRRIFNENDDILLDYL- 59

Query: 156 NYDGSFQEPV 165
           + DG   EP 
Sbjct: 60  HEDGQSIEPS 69


>gi|291242578|ref|XP_002741183.1| PREDICTED: CDC42 binding protein kinase alpha-like [Saccoglossus
           kowalevskii]
          Length = 1364

 Score = 41.8 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 87/216 (40%), Gaps = 16/216 (7%)

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP-ET 412
           L  +   + +  +E+   +T+  L   ++ + +   L+   +   +  R++R      E 
Sbjct: 301 LEQMHDRYKSQTKELKEAQTQRKLA-MQEFSDLNDRLSDLRSQKQKSSRLVREKEEELEH 359

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A +++     +A   + +         T  + G   L++ Q  A L+  + +   +  ++
Sbjct: 360 AMQKVDMMRQDARKSEKMRKEKRALGRTPSTSG---LNKQQELAKLKATMEKRDVMYEEN 416

Query: 473 IRNE----LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
           +  E    +N      ++ LD  ++  RL+G IK     +K++L+  RR  + +    + 
Sbjct: 417 LTKEKTRHINEEKKLREQLLDSENNVQRLVGEIK----VIKEKLENSRRANVSDHEEKIS 472

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           D       +M +        K++ + V RA  +  K
Sbjct: 473 DLRRKYEREMAIV---QEDNKKLQMDVDRANSQMEK 505


>gi|270012741|gb|EFA09189.1| structural maintenance of chromosomes 6 [Tribolium castaneum]
          Length = 1070

 Score = 41.8 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 22/256 (8%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +   ILNQ      L S    N   L     +  +L    K     ++E          +
Sbjct: 182 NPVCILNQDTSRNFLSSNNPKNKFILFMKATKLDSLSEEYKKITFHKKESQKVF----ED 237

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K      ++  L      +D    I+         + +LMQ     + ++D  +      
Sbjct: 238 KKTSFNKLVEELKQLKQKIDNHKSIVGIRE-----KIKLMQIELLWAKVRDAEEEAQKDE 292

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             +       L++ Q + I +            D++  + SL  +I E  + +  +SR  
Sbjct: 293 ENVEK-----LTKKQEKLISDCENR---LKRVADLKKNIASLTQKINELKETIQVQSRPQ 344

Query: 499 GIIKQELLSVKDELDTPRRTR-----IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +K+ +  ++ + +  RR +      +E      D      E+    +S +   K   L
Sbjct: 345 WDVKRVIDDLRTKYNDKRREKQLIYGTIESKNKEADSLLHDIENANEKMSRVEQEKMQRL 404

Query: 554 SVYRAQRRGGKGRSGV 569
                     KG    
Sbjct: 405 RDLNNMSEKIKGMEDH 420


>gi|118359750|ref|XP_001013113.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89294880|gb|EAR92868.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1937

 Score = 41.8 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 88/250 (35%), Gaps = 10/250 (4%)

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + +L    +   L  +           + +  +L   ++   + +     +  +  L   
Sbjct: 294 EELLRFKEKLQRLTVIEEQVKSDQMNLQNKVNSLEQNIQKLKSIKTNKDEKEIEARLK-- 351

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
                V +       +LDEV+  I    +    +++  ++       K   +     +  
Sbjct: 352 ----EVNIQCTKLQKDLDEVIDKITNEKDGIDTKQQEYEQLVLREKFKTQQEKQSYFNQR 407

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           I         + QT+  L+ ++ + +    + +  E+  L  +I       +   + +  
Sbjct: 408 IQDIKQSISEKSQTQQNLKEKVKK-SEQRLNLVNQEIEKLQNQINSFQTESNKAQKTIND 466

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM--VVTVSHLGYVKRVPLSVYRA 558
            K ++  ++ E    R+T I +  +++ED +  +++ +  +      G ++ +       
Sbjct: 467 KKNQIQKLRQEQLEKRKT-INDKKIELEDLNNQIKKRVDDIQKQLKSGLIQAIEQIEESI 525

Query: 559 QRRGGKGRSG 568
           Q+ G +G  G
Sbjct: 526 QKEGIQGYKG 535


>gi|291571204|dbj|BAI93476.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 2350

 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 5/153 (3%)

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           F       R+                L          + I        +     +Q +WN
Sbjct: 799 FSHWGKTSRSANDTIAVSAVQDEFEDLGNGWYRASCTLTIPDEISLLRSFEIAKVQGNWN 858

Query: 424 ASDIKDLIDLIDDSSYT----IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           + +I+     +   S T    +       L++ Q  ++  L+  +   +    ++NE   
Sbjct: 859 SLEIRKHHIRLLSDSITSAKYVDDMALKMLADDQADSMANLKDLKRKEMQEITLKNEKQE 918

Query: 480 LGIEIKECLDILSSRSRLLGIIKQ-ELLSVKDE 511
           L  ++    D+   R R+  +I + + L ++++
Sbjct: 919 LEEKLAGLKDLELIRRRVNELIVEIQDLEIQEK 951


>gi|297587504|ref|ZP_06946148.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
           53516]
 gi|297574193|gb|EFH92913.1| DNA polymerase III, gamma/tau subunit DnaX [Finegoldia magna ATCC
           53516]
          Length = 538

 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 79/222 (35%), Gaps = 7/222 (3%)

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           DI D+    D +G   ++       A  +LN LY  +  + + +V    LN ++    + 
Sbjct: 234 DINDILGIVDNKGIFKLVNSIIKKDAAEVLNNLYTISHNKPVENVMDELLNHFRNLLLSK 293

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            G+        +      ++  L        ++  ++I + +  ++ +    + N +   
Sbjct: 294 NGLENIRQNNTQYNDDYNSQSEL---ITNRQIVESMSIIIEHQKKLKQ----ADNQKALL 346

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+ R  +  D  DLI  ++     + +     +    T+ ++E        +      
Sbjct: 347 EILVMRLIDYIDYDDLIARVNTLEDKLNNIEQNGIKINSTQKLVEFDEKIDKNIEISQKS 406

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           +E      E+ +  DI+ +  ++     +E +   D     R
Sbjct: 407 SEKAEKSDELSDKNDIIKNDEKIDDKSDEEFVENDDSFGKLR 448


>gi|254478575|ref|ZP_05091949.1| hypothetical protein CDSM653_1645 [Carboxydibrachium pacificum DSM
           12653]
 gi|214035504|gb|EEB76204.1| hypothetical protein CDSM653_1645 [Carboxydibrachium pacificum DSM
           12653]
          Length = 769

 Score = 41.8 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 6/219 (2%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+ + L NK       +  L   + ++  V+  I+      +    L        + K
Sbjct: 429 MERQKERLENKIEQLRGRIENLEEKIRSVQNVIARIKE----NSGEETLEGYKKKIEEKK 484

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           DL   I  +   + S           +AI EL   +   LGR     E++ L  + ++  
Sbjct: 485 DLETKIKGAERELRSLLGGEAISYWEQAIEELSSYKDKALGRKYDEKEVDHLRRKRQQLE 544

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           + L +  +    IK+ +  ++       R+        + D + I  E       +    
Sbjct: 545 EKLETLEKQREDIKRVMTEIEKRAGEILRSEKYLYCHTLADLEKIKEELQKFIQENETRK 604

Query: 549 KRV--PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
            RV   + ++    R  KG+   +  ++  V+  F V+T
Sbjct: 605 NRVLTAIKIWEKIDREEKGKVATLFGEDSLVSKYFAVAT 643


>gi|34328303|ref|NP_081876.2| hypothetical protein LOC70909 [Mus musculus]
 gi|26380869|dbj|BAC25450.1| unnamed protein product [Mus musculus]
 gi|123229909|emb|CAM27672.1| novel protein (4921504E06Rik) [Mus musculus]
 gi|123233322|emb|CAM25810.1| novel protein (4921504E06Rik) [Mus musculus]
 gi|123233572|emb|CAM21785.1| novel protein (4921504E06Rik) [Mus musculus]
 gi|124297372|gb|AAI32143.1| RIKEN cDNA 4921504E06 gene [Mus musculus]
 gi|148676171|gb|EDL08118.1| RIKEN cDNA 4921504E06, isoform CRA_a [Mus musculus]
 gi|187950865|gb|AAI37969.1| RIKEN cDNA 4921504E06 gene [Mus musculus]
          Length = 560

 Score = 41.4 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 11/214 (5%)

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE-- 411
           L   +       ++      K    +  D   ++ G+      +++    ++ + + +  
Sbjct: 111 LCDKMLEMKRHYQQGEDIMRKSFQQQLCDAIAIIKGMYQKYFEIEDEKAALQDADDVKLN 170

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             RR+L ++     ++K+ ++L ++  +          S  +  +  EL   R       
Sbjct: 171 VLRRKLKEKEEIIKNLKNELELYEEFGFKKVDSFAKESSSPKPISEKELLDCRAENERLI 230

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR---RTRIVEGLLDME 528
            I  EL            +L      L  I  +      +L   R   R  +    L ++
Sbjct: 231 QIIAELEEESRTAINENAMLEDEVMYLKEISDQDQRTIQKLMDSRERLRYELDCEKLAIQ 290

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           D     ++D+ +        K   +S Y   +RG
Sbjct: 291 DMISRQKDDIEIKR------KFASISTYHGGKRG 318


>gi|315157445|gb|EFU01462.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
          Length = 457

 Score = 41.4 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 80/246 (32%), Gaps = 16/246 (6%)

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           Y+ N    ++KI+ L   K   D   + +  +   YR  IE  +  +A  + +++     
Sbjct: 143 YKNNWETKVKKISPLKYLKFKYDDIQIYELRNWYQYRFEIEFLQKINAKKLADEV----M 198

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH------V 386
                  N     G           LK    F +       ++ L K     +      +
Sbjct: 199 YPKYSYQNGTYRKGVDMRTLN-KKWLKENKQFFKNSNRDFYEFELEKRIKNRNGKVVPGI 257

Query: 387 LVGL-AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLIDDSSYTIGSD 444
              L   A+  + + + +++F       +  ++      + +KDL ID   D++  I   
Sbjct: 258 EKFLDYHAINKIPKGIGMVKFQNWVIKNKINMLYYFDYLNMLKDLNIDPTGDANLIIPK- 316

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS-RSRLLGIIKQ 503
             +  +      +L            + ++ E      +  +   ++ +   ++   I +
Sbjct: 317 -DLKKAHDNAVELLNQLKIEQKRKENEKLQQEYEETLAKRLKLERVVGNYEFKIPRDIIE 375

Query: 504 ELLSVK 509
            +   K
Sbjct: 376 IIQEGK 381


>gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
 gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
          Length = 591

 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 87/271 (32%), Gaps = 13/271 (4%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
            +I     I N +    G   I  +  I      + Q  + E+  Q+++  +LE I   +
Sbjct: 27  MLIFQAGSIINQFLPETGDKYIGDLFEI---KTPKIQFNLDELFEQLDRTFVLESIDNNL 83

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
              +   I     +   + +  +          ++   L  +      F  + + L   K
Sbjct: 84  LSLKGQII----YQESDELFIFLCNPIISKMDSLVELGLNLHNLPMHNFLADFIFLLNTK 139

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
               T    L   +   +  + +    L  K ++R H    L I    L + + + + + 
Sbjct: 140 DSLLTDANHLNQRLKEADTKLKQSNLLLEAKVKERTH---NLRIREEELRDEISVRKDAE 196

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
               A + L     + +  + L ++  +    +G+      +E+       L L     L
Sbjct: 197 KELIAMK-LRAEDASKAKSQFLANMSHEIRTPLGAIMGF--NEILLENSKSLELPDYYPL 253

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             + I N L  L   I   LDI     R   
Sbjct: 254 YLNYIDNSLQYLLKVINNILDISKIEERKFK 284


>gi|116206964|ref|XP_001229291.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88183372|gb|EAQ90840.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 998

 Score = 41.4 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 9/191 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISA-IRVFAGRNSVGVRG------ISLAKGDQV 735
           E +      Q +  + + K  + VR       R    + +  V G      + +   D  
Sbjct: 199 EPVPAVRDAQSDMAVFSRKGSKVVRDRRQQRERAKQAQEATNVAGTALGNLMGVKDEDTD 258

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            ++ I +  D+       +  H+       S    +    + +      + EE  + ++ 
Sbjct: 259 SALPIAVEDDSKAQNTNKFSDHLKKSEGASSFSQSKSLREQREFLPAFAVREELLRVIR- 317

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q ++ + E G GK T    F   +  GK       ++   + A+     V +  ++ L
Sbjct: 318 DNQVVIVIGETGSGKTTQLTQFLFEDGYGK-TGMIGCTQPRRVAAMSVAKRVAEEMEVKL 376

Query: 856 VSDKGTLIRVP 866
               G  IR  
Sbjct: 377 GGTVGYAIRFE 387


>gi|12853076|dbj|BAB29632.1| unnamed protein product [Mus musculus]
          Length = 400

 Score = 41.1 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 11/214 (5%)

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE-- 411
           L   +       ++      K    +  D   ++ G+      +++    ++ + + +  
Sbjct: 111 LCDKMLEMKRHYQQGEDIMRKSFQQQLCDAIAIIKGMYQKYFEIEDEKAALQDADDVKLN 170

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             RR+L ++     ++K+ ++L ++  +          S  +  +  EL   R       
Sbjct: 171 VLRRKLKEKEEIIKNLKNELELYEEFGFKKVDSFAKESSSPKPISEKELLDCRAENERLI 230

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR---RTRIVEGLLDME 528
            I  EL            +L      L  I  +      +L   R   R  +    L ++
Sbjct: 231 QIIAELEEESRTAINENAMLEDEVMYLKEISDQDQRTIQKLMDSRERLRYELDCEKLAIQ 290

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           D     ++D+ +        K   +S Y   +RG
Sbjct: 291 DMISRQKDDIEIKR------KFASISTYHGGKRG 318


>gi|47224359|emb|CAG09205.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 578

 Score = 41.1 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 101/311 (32%), Gaps = 17/311 (5%)

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
             V++   +  D   E I+      G  I  +      Y      + + GV++ E  +  
Sbjct: 151 HRVMEQHKLSRDQWEERIQVWHEEHGGTI--KEDAMLEYLKIAQDLEMYGVNYFEIKNKK 208

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
              +    +        + EK  + +  K     +++R+ S      + I+     S D 
Sbjct: 209 GSTL---WLGVDALGLNIYEK-EDKLTPKIGFPWSEIRNISFNDKKFI-IKPIDKKSPDF 263

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV-AFREEVVVRRTKYLLNKAR 381
           +        + + L           +  +   I + +    A  E+ + ++ +  L K R
Sbjct: 264 VFYAPRLRINKRILQLCMGNHDLYMRRRKPDTIEVQQMKAQALEEKQLKQKERDRLEKER 323

Query: 382 DRAHVLVGLAIAVANLDE--VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                +      +    +  ++++ +F    + A +EL  +   A+ + +     +  + 
Sbjct: 324 KMRESIEREKEQIEQEKKELMLKLYQFKEQNKKAEQELKDQVQRAAMLDEERRSAEMKAA 383

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
           ++        SE Q+  + +  LARL    +         L   + +   +   R R   
Sbjct: 384 SLA-------SERQSALLAKEELARLAESQQKSKEQLSAELAEYMSKIALLEDDRKRQEH 436

Query: 500 IIKQELLSVKD 510
            +       K+
Sbjct: 437 NVNMWQNKAKE 447


>gi|301112805|ref|XP_002998173.1| spindle assembly protein, putative [Phytophthora infestans T30-4]
 gi|262112467|gb|EEY70519.1| spindle assembly protein, putative [Phytophthora infestans T30-4]
          Length = 535

 Score = 41.1 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 69/225 (30%), Gaps = 20/225 (8%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFREEVVVR 371
           ++    ++ +  L   +   S  S  +    G    + +       L+       +V   
Sbjct: 293 RQKYQHELQIEHLRAQSQDLSQGSSALSGEVGELRSQNKELDQKVFLQEKQINALQVRAD 352

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSWNASDIKD 429
             +  L    +       L  A     E V   +  +  N    +++L       +   +
Sbjct: 353 ALQQQLADKEEVVKKTTDLLQAAKVHSEEVDESLKMYRDNHARLQQKLELSISEINKGNE 412

Query: 430 LIDLIDDSSYTIGS----------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +I+ I + + T+ +              ++ E Q +    L   + T          +  
Sbjct: 413 IIERIQNENRTLKAKMRMKVKIIKQQEHFVEEKQLQREEALLELKSTKEDIRKRDEHILQ 472

Query: 480 LGIEIKECLDILSSRSRLL----GIIKQELLSVKD-ELDTPRRTR 519
           L   IKE    L   ++LL     +I      + + +L   RR+ 
Sbjct: 473 LKDTIKELSQKLEDSNKLLASNQQVITWLNKEINEAQLGRQRRST 517


>gi|284053898|ref|ZP_06384108.1| hypothetical protein AplaP_20804 [Arthrospira platensis str.
           Paraca]
          Length = 978

 Score = 41.1 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 5/153 (3%)

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           F       R+                L          + I        +     +Q +WN
Sbjct: 799 FSHWGKTSRSANDTIAVSAVQDEFEDLGNGWYRASCTLTIPDEISLLRSFEIAKVQGNWN 858

Query: 424 ASDIKDLIDLIDDSSYT----IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           + +I+     +   S T    +       L++ Q  ++  L+  +   +    ++NE   
Sbjct: 859 SLEIRKHHIRLLSDSITSAKYVDDMALKMLADDQADSMANLKDLKRKEMQEITLKNEKQE 918

Query: 480 LGIEIKECLDILSSRSRLLGIIKQ-ELLSVKDE 511
           L  ++    D+   R R+  +I + + L ++++
Sbjct: 919 LEEKLAGLKDLELIRRRVNELIVEIQDLEIQEK 951


>gi|291295274|ref|YP_003506672.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279]
 gi|290470233|gb|ADD27652.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279]
          Length = 854

 Score = 41.1 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 15/191 (7%)

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
             L+ Y+          +    F +E  +  T  +L   +++  V  G+ I+   L    
Sbjct: 306 TTLDEYREIEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAAA 365

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           ++         A R+L  ++ +  D +    L      +  S   +   ++Q   I    
Sbjct: 366 QLSHRY----IADRKLPDKAIDLVD-EAAARLRMALESSPESIDALNRRKLQLE-IEREA 419

Query: 462 LARLT----GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L + T         ++  E+  L  EIK+      +   ++  ++     +        R
Sbjct: 420 LKKETDAESKFRLGELEKEIAELEAEIKKQQAEWEAEREIMQKLRAAQQRL-----DEVR 474

Query: 518 TRIVEGLLDME 528
           T+I +     +
Sbjct: 475 TQIEQAERAYD 485


>gi|118347014|ref|XP_001006984.1| hypothetical protein TTHERM_00198030 [Tetrahymena thermophila]
 gi|89288751|gb|EAR86739.1| hypothetical protein TTHERM_00198030 [Tetrahymena thermophila SB210]
          Length = 1674

 Score = 41.1 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 85/248 (34%), Gaps = 17/248 (6%)

Query: 273  YQVNKAAMLEKIAELVREK---RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            YQ     ++ K  E  ++K   +I +I++    + ++   +   LK       I  + Y+
Sbjct: 1272 YQQQIHKII-KTNEQNQKKDQNKIEEISEQLRAAIQEKETIEQRLKSKREDAQIWEEKYK 1330

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
                             Y+ +   +    + +         ++ +    K  +   +   
Sbjct: 1331 KLLQAKEIQQYF----DYQNQLTNIKEESEQYNQMILNAYQQQIE---EKNNEIKCLEEE 1383

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
                   L ++V +   + + ++ + + +Q   +  +I+     I+  +  I       L
Sbjct: 1384 NQSLQQQLQKMVLLQNETYSQQSEKCKKLQEEISQREIQ-----IETQTIEINQLKKYKL 1438

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
             +   +   +++ +++     + ++ + + L    +    +L  R      I+ +   VK
Sbjct: 1439 DQESEKYQWQMQKSKIENQL-EVLQKQYSELEKFNQGLNSLLQQRQSEFQQIQDDYERVK 1497

Query: 510  DELDTPRR 517
             E    +R
Sbjct: 1498 KENRDHQR 1505


>gi|327275953|ref|XP_003222736.1| PREDICTED: liprin-alpha-3-like [Anolis carolinensis]
          Length = 1199

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 73/229 (31%), Gaps = 11/229 (4%)

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           D+    + + +    +   L +    +  +  L +        + ++  +N         
Sbjct: 275 DVIKSEEINAKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDVNDKLENELAS 334

Query: 355 IGILKAFVAFREEV-------VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII-RF 406
              L      +            ++ +  L KA     +   LA  VA L++       F
Sbjct: 335 KESLYRQSEEKNRQLQDWLEDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNF 394

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
                    +L +++      +    + D+ +  +       LSE   R  L L+     
Sbjct: 395 EERLRQLEAQLEEKNQELQRARQREKMNDEHNKRLSETVDKLLSESNERLQLHLKERMGA 454

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
              ++ +  E+ ++     E    L+++ +LL  I++  + +      P
Sbjct: 455 LEEKNTLSEEIANMKKVQDEL---LANKEQLLAEIERMQMEIDQLRGRP 500


>gi|319653643|ref|ZP_08007741.1| hypothetical protein HMPREF1013_04358 [Bacillus sp. 2_A_57_CT2]
 gi|317394616|gb|EFV75356.1| hypothetical protein HMPREF1013_04358 [Bacillus sp. 2_A_57_CT2]
          Length = 200

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
           T   + +   AIL +          +++R E + L  +         + +++L + ++E+
Sbjct: 7   TYAFAVLLMIAILAIMDGLNNSNAAEELRKERDRLAEKAASFEKEYENNAKMLDVARKEI 66

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             +K E+++ R + I         +     +          ++ R+  S Y A  R GK 
Sbjct: 67  DELKKEIESLR-SAIEYREFSAAIKTIESYKAAQSFKEANAFIARIDGSGYYAGERSGKC 125

Query: 566 RSGVVMRDEDF 576
             G +   E F
Sbjct: 126 HCGFIFNGEGF 136


>gi|301780396|ref|XP_002925608.1| PREDICTED: WD repeat-containing protein 65-like [Ailuropoda
           melanoleuca]
          Length = 1250

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 74/254 (29%), Gaps = 15/254 (5%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT-SLQSLFSVNMVALNG 346
           V +K    I   R+    +   +V +      A ++L    R             +    
Sbjct: 667 VFDKDGRGIKREREVGFAEEV-LVTKTDMEEKAQIMLELKTRVEELKMENEYQLRLKDMN 725

Query: 347 YKPERFTLIG-ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           Y  +   L    L+   + + +  V RT+        + H+   L      L ++     
Sbjct: 726 YSEKIKELTDKFLQEMESLKTKNQVLRTEKEKQDVSHQEHIEDLLEKQNRELQDLECCNN 785

Query: 406 FS---PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ--------T 454
                   +    +L  +       K L D  +  S  +      Y +++Q         
Sbjct: 786 QKLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTTLLEEA 845

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +  +  +L       +    +E   +     +    L         +K E   ++ +  +
Sbjct: 846 QEDVRQQLREFEETKKQIEEDEDQEIQDIKTKYEKKLQDEKESNLRLKGETGIIRKKFSS 905

Query: 515 PRRTRIVEGLLDME 528
            ++  I E   D+E
Sbjct: 906 LQK-EIEERTNDIE 918


>gi|158337479|ref|YP_001518654.1| hypothetical protein AM1_4358 [Acaryochloris marina MBIC11017]
 gi|158307720|gb|ABW29337.1| hypothetical protein AM1_4358 [Acaryochloris marina MBIC11017]
          Length = 415

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            L+D +        T   S +Q +A++ L+        R+ I+ EL +L     +  + L
Sbjct: 89  KLMDQAFLEEQLATTEEFSHIQKQAVITLQDQ---LTNREQIQQELENLRQAKIDLTNRL 145

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           + +   L   + EL  ++D+    R T +   +   +         +   V  +    + 
Sbjct: 146 ADKDTSLRFQEAELSKLQDQFAEER-TALERLQDQAERLSLQIQSSQKTAVHETQQRIIA 204

Query: 550 RVPLSVYRAQRR 561
           +      R Q R
Sbjct: 205 QTTAERLRTQLR 216


>gi|260942823|ref|XP_002615710.1| hypothetical protein CLUG_04592 [Clavispora lusitaniae ATCC 42720]
 gi|238851000|gb|EEQ40464.1| hypothetical protein CLUG_04592 [Clavispora lusitaniae ATCC 42720]
          Length = 808

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 10/239 (4%)

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           IPYQ NK +   +I E V+ +    I D+     R     +IE     S +     L + 
Sbjct: 551 IPYQPNKLSKKGQIKEQVQFRLDKGIRDIVRRGVR-PDYFIIENTLKNSNEQNREALMKL 609

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
                +          +          L+ FV+  EE +    K LL     R  +   L
Sbjct: 610 LPAIRMEKYKTRLEIFHLLLSQPSKQQLRNFVSSIEETLNTSDKLLL----ARRLINENL 665

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
               ++L   V     + + +  +  L  R+ N +       + D + + +         
Sbjct: 666 YDVASSLLATVNDAELNDSRQMVKLNLSLRN-NIARNDFNACVNDIAEFPLDEITLSPFI 724

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
             Q + I +    ++         NE + L   +      L+    LLG I   L   K
Sbjct: 725 YKQCQYIEKNLARKIRASEA----NENSPLFGRLDIMKATLAKLKGLLGDIAARLEQDK 779


>gi|115738152|ref|XP_794820.2| PREDICTED: similar to SMC6 protein [Strongylocentrotus purpuratus]
 gi|115944201|ref|XP_001188037.1| PREDICTED: similar to SMC6 protein [Strongylocentrotus purpuratus]
          Length = 1236

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 31/274 (11%)

Query: 402  RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
            ++ RFS N   AR++L +       + D I  I      +    T      +   I   R
Sbjct: 945  KLERFSKNFRAARKQLSEVETQFKVVDDQIQEISYQVDPLKDAIT------KAMEIYPER 998

Query: 462  LARLTGLGRDDIRNELNSLGIEIKECLDILSSRS---RLLGIIKQELLSVKDELDTPRRT 518
            L     +   +I  E+  +   I++  ++        +L    ++  L VK ++   RR 
Sbjct: 999  LKVSRKVS--NIDKEIKQITKRIEKEQNMQGDPEVITKLYDEARKNYLKVKKQIKGMRR- 1055

Query: 519  RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              VE L  + D+  +V +D+   ++       + +       RG  G+     + E+ + 
Sbjct: 1056 -FVEKLQVILDQRFVVLKDIRSYIAQRTKYYFIAM----MSTRGYVGQLIFDHKKEELIL 1110

Query: 579  DLFIVSTH------TSVLFFSSLGFVYK-----EKVWRLPIGSPQARGKALINILSLNQG 627
             +    +         V   S     +        +W       +A  +  + +  +N+ 
Sbjct: 1111 KVDPGESQKAKDVSKDVRSLSGGERSFSTVCLIMALWESVESPFRAMDEFDVFMDMMNRK 1170

Query: 628  ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              I  ++ F ED+        +F T     +   
Sbjct: 1171 ICIELLLKFAEDQ---PIRQFIFLTPQDMSKITP 1201


>gi|212540338|ref|XP_002150324.1| mRNA splicing factor RNA helicase (Prp16), putative [Penicillium
           marneffei ATCC 18224]
 gi|210067623|gb|EEA21715.1| mRNA splicing factor RNA helicase (Prp16), putative [Penicillium
           marneffei ATCC 18224]
          Length = 924

 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 7/173 (4%)

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                AG     + GI   +GD  ++  I    +  Y     + +H+       S  ++ 
Sbjct: 123 EATTMAGTALGNLIGIKEDEGDSAVAAPI----EEVYKNTNKFSQHLKKDEGGASAFSKS 178

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T  +    +      E    +    Q I+ V E G GK T    F   +  GK      
Sbjct: 179 KTLREQREYLPAFAVREDLLRVIRDNQVIIVVGETGSGKTTQLTQFLYEDGYGK-QGMIG 237

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP--VNEIRIASRATKGVVI 882
            ++   + A+     V++   + L    G  IR     ++  +    T GV++
Sbjct: 238 CTQPRRVAAMSVAKRVSEEMSVDLGDLVGYAIRFEDCTSDKTVIKYMTDGVLL 290


>gi|221061917|ref|XP_002262528.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193811678|emb|CAQ42406.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 446

 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 11/219 (5%)

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+L +Y     +    +  +  +   +      L+         + R    L +K    A
Sbjct: 36  NELLKYKQSFYIIRKTVNLIKNHYSNKINKADTLRERERKHLSHLKRENVILEDKCTFYA 95

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
             +  L        ++      S   E  +   +    + S+   ++ L +D    +   
Sbjct: 96  EHVEELKKIYTEQIKLKNNKIESLQDELDKMRKVTEVGDESNNTRILKLREDQIERLSQ- 154

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                   Q  +I  L   ++       +  E+  L   I    + +         +++ 
Sbjct: 155 --------QLDSINGLYYKQVD--SNKKLMKEIEELNKSILYLNNKIQEEKNNRDNVRRR 204

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           L   K      +R ++   ++  E++     E+  + VS
Sbjct: 205 LKYYKRYTKNKKRFKLNFDMMVDEEDSGRTNEEEDICVS 243


>gi|256078042|ref|XP_002575307.1| hypothetical protein [Schistosoma mansoni]
 gi|238660542|emb|CAZ31540.1| expressed protein [Schistosoma mansoni]
          Length = 6552

 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 26/232 (11%)

Query: 259  TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               DR    + + P  V+   + E+I E +    +   ++   +   Q + +VIE  +  
Sbjct: 5716 IETDRVIQSLFQTPSGVSI-TVAEQIMENMNRISVSIQSEKVGDKCEQKHLLVIEDNKST 5774

Query: 319  SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            S+ ++           +  S           E F+L  +         EV+ +R K  L 
Sbjct: 5775 SSQILSA-----NDHNTGHSKTW-------AELFSLEVVQLESSCENLEVMCKRIKDRLM 5822

Query: 379  KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            + + R    V L I +            + N   +   L   +  +++ +          
Sbjct: 5823 EQQKRWAKFVSLLIRIDKFLRTELPECQNVNFALSINGLPTNNTTSTNYEL--------- 5873

Query: 439  YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                S+    +SE +  A+  L L R      + +  EL  L   I+   D+
Sbjct: 5874 ----SNTKAQISEEKMHALSGLELRRRASHMNEQLEKELKQLDKYIENLQDL 5921


>gi|203283998|ref|YP_002221738.1| hypothetical protein BDU_76 [Borrelia duttonii Ly]
 gi|201083441|gb|ACH93032.1| uncharacterized conserved protein [Borrelia duttonii Ly]
          Length = 771

 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 99/266 (37%), Gaps = 31/266 (11%)

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAML---EKIAELVREKRIVDIADLRDE-------SDR 305
           I   +G      ++EI        ++   E I ++ + K I+ I D  +        +  
Sbjct: 142 ILLINGKDSFTNISEILITTKLDKIVYGFENIDKIFKFKEILIITDNHNIKKELEKLNVA 201

Query: 306 QGYRVVIEL-----KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           +  R+ I+L        ++ ++I++ LY   + +S  + N   L     + + +   LK 
Sbjct: 202 KDKRLTIKLISNSPHPYSNHELIMHFLYNEENTKSNINPNKNILVTNIEDLYNVYSTLKT 261

Query: 361 FVAFREEVVV-RRTKYLLNKARDRAHVLVGLAIAVANLD-EVVRIIRFSPNPETARRELM 418
              ++E+++     K + +K            I   N+D +   I   +P  +     L 
Sbjct: 262 NSPYKEKLITINGNKKIKSKITKVKIGTSIKQIIDENIDLKKYDIFLNNPTNKIKIDNLN 321

Query: 419 Q------------RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
                        R        + I L++  S++      + L +++ +   E    +  
Sbjct: 322 VPITRDIYSITILRKKTILSKVNKIKLLNTPSFSPLCMEQIILEKIKNQDNNENTQQQYL 381

Query: 467 GLGRDDIRNELNSLGIEIKECLDILS 492
              + +I  E+N +  EIKE  +IL+
Sbjct: 382 QYTKTEIEEEINKVKKEIKE--NILN 405


>gi|126306687|ref|XP_001364626.1| PREDICTED: similar to protein tyrosine phosphatase, receptor type,
           f polypeptide (PTPRF), interacting protein (liprin),
           alpha 4, isoform 1 [Monodelphis domestica]
          Length = 1203

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 65/214 (30%), Gaps = 11/214 (5%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R    +   L +    +  +  L +        + ++  LN            L    
Sbjct: 277 SSRHQRDLREALAQKDDMEERITTLEKRYLAAQREATSIHDLNDKLENELANKESLHRQC 336

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP--------ETAR 414
             +   +    +    K +        L    A L + +  +  +               
Sbjct: 337 EEKARHLQELLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEEHLRQLE 396

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++   + ++    + +D +  +       LSE   R  L L+        ++ + 
Sbjct: 397 AQLEEKNQELARVRQREKMNEDHNKRLSDTVDRLLSESNERLQLHLKERMAALEEKNTLI 456

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            EL S   +I+E       + RL   I++  L V
Sbjct: 457 QELESSQRQIEEQQ---HHKGRLSEEIEKLRLEV 487


>gi|74694271|sp|Q75A30|SEC31_ASHGO RecName: Full=Protein transport protein SEC31
          Length = 1233

 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 9/153 (5%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S D++ ++ + +   T    NS L  ++  I  R I DL D L     + +   ++    
Sbjct: 533 SDDDQIKQKVKNAYYTKYASNSQLARSLYAISERKIEDLVDNLNVSQWKHIVMAIKTYST 592

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
              K     R+   ++          +Y A       W+       G G           
Sbjct: 593 EQSKNSLMIRLGDRLVQAGQRQNAGTLYLA----GSHWTRLHP--SGSGAACIESEMRSH 646

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
                E  L+    F+        +    N DG
Sbjct: 647 KNTLNEAHLEALTEFVER---FTVLSAYINEDG 676


>gi|156359791|ref|XP_001624948.1| predicted protein [Nematostella vectensis]
 gi|156211756|gb|EDO32848.1| predicted protein [Nematostella vectensis]
          Length = 146

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLK--------EQFILTVSEKGFGKRTS 813
            R  SG +   T  + D  V    ++ER     +         ++ + ++S KG G+   
Sbjct: 2   GRGDSGVSSISTKGRGDRGVSSISTKERGDRGGVSSISTKGRGDRGVSSISTKGMGEL-G 60

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIR 871
                   R  +G+ +       + G  V+        ++ +  +S KG   R  V+ I 
Sbjct: 61  VSSISTKGRGDRGVSSISTKGRGDRG--VSSISTKGMGELGVSSISTKGRGDR-GVSSIS 117

Query: 872 IASRATKGVVIFSTA 886
              R  +GV   ST 
Sbjct: 118 TKGRGDRGVSSISTK 132



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIR 864
           KG G  +         R  +G+ +    +  + G + ++      D+ +  +S KG    
Sbjct: 1   KGRGD-SGVSSISTKGRGDRGVSSISTKERGDRGGVSSISTKGRGDRGVSSISTKGMG-E 58

Query: 865 VPVNEIRIASRATKGVVIFSTA-KDERVVS 893
           + V+ I    R  +GV   ST  + +R VS
Sbjct: 59  LGVSSISTKGRGDRGVSSISTKGRGDRGVS 88



 Score = 38.8 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +   G+          + E  + ++S KG G R          R  +G+ +     + E+
Sbjct: 40  TKGRGDRGVSSISTKGMGELGVSSISTKGRGDR-GVSSISTKGRGDRGVSSISTKGMGEL 98

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           G          +  +  +S KG   R  V+ I    R   GV   ST 
Sbjct: 99  GVSSISTKGRGDRGVSSISTKGRGDR-GVSSISTKGRGNWGVSSISTK 145


>gi|294659582|ref|XP_002770604.1| DEHA2G10098p [Debaryomyces hansenii CBS767]
 gi|238690594|sp|B5RUP5|EIF3A_DEBHA RecName: Full=Eukaryotic translation initiation factor 3 subunit A;
           Short=eIF3a; AltName: Full=Eukaryotic translation
           initiation factor 3 110 kDa subunit homolog; Short=eIF3
           p110; AltName: Full=Translation initiation factor eIF3,
           p110 subunit homolog
 gi|199434076|emb|CAR65939.1| DEHA2G10098p [Debaryomyces hansenii]
          Length = 900

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 73/249 (29%), Gaps = 13/249 (5%)

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           E+I      + +  +   R     +     +++    +A  I+              + +
Sbjct: 618 ERILAEQERRNLEKLERERQLVKEKE---KLKIAEEINAKGIIKLDLNNLDDLDTEKLRI 674

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           + +     ++  L   LK      +       +Y L      A       I      + +
Sbjct: 675 MQIEQLNKDKKDLEERLKVLSKKNDHTERAFRRYELQYLEKDAEKQQEDDIKNYETLKEL 734

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           +I +   + E +     +      D +    +ID+   +  ++          +A LE  
Sbjct: 735 KISKAKKDHEESLALKDRLQRIVPDFEPFKKIIDEKHSSKLAELRKE-----AQAALEQA 789

Query: 462 LARLTGLGRDDIRNEL---NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP--R 516
               T   +    +EL        +  E  +I   R   +   K+EL   K++      R
Sbjct: 790 KRERTERVKHQRMDELMERREYERKEAEQEEIKRKRQEEMDKFKEELRIQKEKDADSLRR 849

Query: 517 RTRIVEGLL 525
           R  +     
Sbjct: 850 RQEMANESA 858


>gi|118347380|ref|XP_001007167.1| hypothetical protein TTHERM_00214710 [Tetrahymena thermophila]
 gi|89288934|gb|EAR86922.1| hypothetical protein TTHERM_00214710 [Tetrahymena thermophila SB210]
          Length = 1465

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 100/301 (33%), Gaps = 21/301 (6%)

Query: 281  LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            +E+ +  +   +I  I +  +   +  + VV   +        L+ +Y+           
Sbjct: 800  IEQTSNDLFLAKISKIMEKNELKKKLQFEVVKLEQTKKIETQKLDNMYKQKMDAINKDFQ 859

Query: 341  MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            +   +  K +   +      +    E+ V  + KY  +               +  L + 
Sbjct: 860  ITMESDMKMKDTFVSKSNDEYNKLYEQFVTEQKKYKQD------------IEQLEQLHKQ 907

Query: 401  VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                    N +        +  +  D+++L++   +    +  +      ++Q +    +
Sbjct: 908  KIEYENQRNKDLEDEIEKIKQKHKDDLQNLLNQHKEDLKKLKMNFYEKCQKIQVKYSNVV 967

Query: 461  RLAR------LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
               +      +T L   D+  E   +  +IKE  + +S   R+   ++++   +  + + 
Sbjct: 968  DNTKNFGNAFITRLENQDVEYE-KEIDEKIKELKEEISKIKRVNEDLEKKNQDLIKQYEK 1026

Query: 515  PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV-KRVPLSVYRAQRRGGKGRSGVVMRD 573
             +R    +    ++++     E  +  + +   + K     + R Q    K  +    +D
Sbjct: 1027 LKR-EDEDLQKKIDEQLKRHNEIRMENLKNDQDILKMQHQLLERLQVIDSKEETCKQAKD 1085

Query: 574  E 574
            E
Sbjct: 1086 E 1086


>gi|77406476|ref|ZP_00783531.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174911|gb|EAO77725.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 30

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 22/29 (75%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGR 40
          ++K +  V++T EM+ S++ YA++VI+ R
Sbjct: 2  QDKNLVDVNLTSEMKTSFIDYAMSVIVAR 30


>gi|115440159|ref|NP_001044359.1| Os01g0767000 [Oryza sativa Japonica Group]
 gi|22535586|dbj|BAC10761.1| putative nuclear matrix constituent protein 1 (NMCP1) [Oryza sativa
           Japonica Group]
 gi|32352208|dbj|BAC78597.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|53793553|dbj|BAD53323.1| putative nuclear matrix constituent protein 1 (NMCP1) [Oryza sativa
           Japonica Group]
 gi|113533890|dbj|BAF06273.1| Os01g0767000 [Oryza sativa Japonica Group]
 gi|125572150|gb|EAZ13665.1| hypothetical protein OsJ_03582 [Oryza sativa Japonica Group]
          Length = 987

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEV-VRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++   KA++  H+     +    L+ V V + +     + A  E  +R    S+IK  I+
Sbjct: 636 EFEQKKAKELEHINSQKEMINTKLEHVAVELQKLKDERKEATLERERREQELSEIKGTIE 695

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +++    +     +  S+ +    + +++ +L  L    I +E   L +   +   + S
Sbjct: 696 ALNNQREKLQEQRKLLHSDREA---ITVQIQQLNVLEELKIDSENKQLSLLQHDKSKLGS 752

Query: 493 SRSRLLGIIKQELLSVKDELD 513
             +           S K    
Sbjct: 753 DINVKDNHHDNSHSSPKQRFG 773


>gi|301606211|ref|XP_002932719.1| PREDICTED: desmoplakin isoform 1 [Xenopus (Silurana) tropicalis]
          Length = 2851

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 15/204 (7%)

Query: 377  LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-- 434
            L++   +  +      +   L E ++  +   +  +A++ L +     +++ D I  +  
Sbjct: 1057 LDQNLQKYQIECNEYKSRILLLEDIK-RKAEMDGSSAKQNLEKYYSQITELNDKITRLTY 1115

Query: 435  DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG---RDDIRNE--LNSLGIEIKECLD 489
            +               E+Q     +++  +   L    R  +  E        EI+    
Sbjct: 1116 EIDDEKRRRKALEDRCEMQKNDFDQMQKKKQNDLDAINRQRLETEKIYKEKEYEIERLKI 1175

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTP---RRT----RIVEGLLDMEDEDCIVREDMVVTV 542
            +L    +     + EL  V+ + +      RT     I      ++       ED     
Sbjct: 1176 LLQDEGQRKREYENELSKVRKQYNDEISSLRTKYESEITITKTTIQQISAQKEEDTYDLK 1235

Query: 543  SHLGYVKRVPLSVYRAQRRGGKGR 566
            S L  + R    +     R   G 
Sbjct: 1236 SQLEKLARDNRDLTAEITRMNDGM 1259


>gi|256997198|dbj|BAI22792.1| mKIAA0654 protein [Mus musculus]
          Length = 1245

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 335 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 394

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 395 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 454

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 455 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 514

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 515 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 552


>gi|313225548|emb|CBY07022.1| unnamed protein product [Oikopleura dioica]
          Length = 2355

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 87/275 (31%), Gaps = 13/275 (4%)

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            + +  EI   +N      K        +   I DL DE D +   ++  L+      + 
Sbjct: 726 WKAMSREICGGINLCDTKHKFGHTKLFFKAGVIGDLEDERDEKIAAILTSLQSYMRYRLA 785

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
                     +    V    +  ++     L      ++    ++    ++    K    
Sbjct: 786 ERTYAEMIKRRDSIEVIQCNIRAFQF----LKD--WEWMKIIFKIKPLISQAEEGKKMQD 839

Query: 384 AHVLVGLAIAVANLDEV--VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
                         ++     +   S + E  R EL Q++   + + D  +   +     
Sbjct: 840 LEKNYDEVKKQLEKEKKRRAELEEQSVSLEQERNELNQKAEAQNSLLDDAEGRCEELIGN 899

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
             +    + E+Q +   E  +       +  + +E + L  +I +    L+   +     
Sbjct: 900 KIELDSKIRELQEKLEDEEEMNNELVAKKRKLEDESSELKKDIDDLELTLAKIEKEKHAT 959

Query: 502 KQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           + +  +V +EL +     I E +  +E E   ++E
Sbjct: 960 ENKSKNVTEELAS-----ITESIHKLEKEKKALQE 989


>gi|311745730|ref|ZP_07719515.1| tRNA 2-selenouridine synthase [Algoriphagus sp. PR1]
 gi|311302423|gb|EAZ79523.2| tRNA 2-selenouridine synthase [Algoriphagus sp. PR1]
          Length = 351

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 24/178 (13%)

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475
           L         + DL DL +      G  G     S  Q   ++  +L +        + N
Sbjct: 155 LKALEDKNEQVLDLEDLANHKGSAFGGIGQQPQPSVEQFENLMAEKLRQFNSNETIWLEN 214

Query: 476 ELNSLGIEIKE-----------CLDILSSRSRLLGIIKQELLS------------VKDEL 512
           E   +G  I              +DIL S    + +IK+E  S            +K +L
Sbjct: 215 ESRRIGKIIINDQFFNLMGCSPLIDILKSEEERIQLIKEEYASLPKEELIKAINRLKKKL 274

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
              R T  +E +++   E  I    +    ++   ++R   +  +     G G    V
Sbjct: 275 GGLRTTTAIEDIINDHHESWISNLLIYYDKTYQFDLERHDPNKLKRIDLTGIGVEESV 332


>gi|194225251|ref|XP_001916678.1| PREDICTED: similar to Uncharacterized protein C14orf145 [Equus
           caballus]
          Length = 1034

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 103/314 (32%), Gaps = 21/314 (6%)

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE+   D E+  ++++  Q+N +AM  ++ E+ R     D       +  +   +
Sbjct: 331 RFRRGIEREKEDLEK-QMSDLRVQLNFSAMASEVEEVKRCMERKDKEKAHLVAQHKHADL 389

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I      + D            Q   ++   A    +  +      ++ +    ++   
Sbjct: 390 QISELTHHAEDATKQAEQYLIEFQQSEALRQEAEKRREELKLKAQESIRQWKLKHKK--- 446

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN-----PETARRELMQRSWNAS 425
                 L +A ++    +G      N D+ + +             T+  EL  +    S
Sbjct: 447 ------LERAMEKQSETLGQLTDKNNQDQGIDVFVMKSECIFQCGATSEEELHCKEQKLS 500

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+K     ++        D    +S +++    + ++     + +  +  E+  L     
Sbjct: 501 DVKAHQADLELEV----KDSVDTISRLESELKKQNKIQSQMKVEKTHLEEEIAELKKSQA 556

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVS 543
           +    L      +  +      + ++L   +R    +++ L D++ +     E+    ++
Sbjct: 557 KDKAQLLEMQEAIKDLSAIRADLANKLAEEQRARKEVLKNLSDLQTQAKSRDEETTTIIT 616

Query: 544 HLGYVKRVPLSVYR 557
            L   + V      
Sbjct: 617 QLKLERDVHQRELE 630


>gi|291393086|ref|XP_002712973.1| PREDICTED: progesterone-induced blocking factor 1 [Oryctolagus
           cuniculus]
          Length = 756

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 21/220 (9%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILN-QLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            D    S+ Q  ++ I  +     +++ N QL +    Q       + ++  K +  T I
Sbjct: 31  TDDISSSEEQEGKIKITRQLIERKELLHNIQLLKIELSQKN-----MMIDNLKVDYLTKI 85

Query: 356 GILKAFVA---FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
             L+  +     +++++  R    L   +  A     L        E+  I+      E 
Sbjct: 86  EELEEKLNDALHQKQLLTLRLDSQLTFQQKDARKYQELMK-----QEMETILVRQKQLEE 140

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
              +L +++ +       I+L D+    + +     LS      I E    R   L    
Sbjct: 141 TNIQLREKAGDIRRNLRDIELTDEQYMKLKAFPEDQLS------IPEYVSIRFYEL-VTP 193

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           +R E+  L ++  +  + LS+    L  + +     +   
Sbjct: 194 LRKEICELQMKKNDLSEELSTNKSQLKQLTETYEEDRRNY 233


>gi|68068205|ref|XP_676012.1| chromosome segregation protein [Plasmodium berghei strain ANKA]
 gi|56495507|emb|CAH95737.1| chromosome segregation protein, putative [Plasmodium berghei]
          Length = 788

 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 81/250 (32%), Gaps = 11/250 (4%)

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYT 331
           YQ  K   L K  E+ +    +   +  +E  R+    + I     ++ +  +    +Y 
Sbjct: 269 YQNIKKNYLSKEEEITKINNKLIAFEKGEEEKRKINKDIQIISNNLSNIENRIETS-KYG 327

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            L          +   + E  TL    K       ++    T Y  NK +    +   + 
Sbjct: 328 CLSKKIDNAKDEIEKGREELKTLYDDQKRLNEIIRKLEKDITDYENNKDKKEEDLKDSIK 387

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
                 +++ ++       +    +L+ +  N   ++   + +  +  TI       +  
Sbjct: 388 KLK---NKIKQLETEENKKKEQVDDLLMQIENFKQVEKERNDLIIADATITDIENKIVDI 444

Query: 452 VQTRAILELRLARLTGLGRD------DIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            +   I    L  L               NE+  +  +I++     ++ +  L  +  +L
Sbjct: 445 QKNIDIENENLKELENKIVQLQISFGSYENEIKQVVKKIEDLEKKKTNYALDLKKLDNKL 504

Query: 506 LSVKDELDTP 515
           + +K +  + 
Sbjct: 505 IDIKKDFKSA 514


>gi|301610273|ref|XP_002934675.1| PREDICTED: liprin-alpha-3-like [Xenopus (Silurana) tropicalis]
          Length = 1194

 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%)

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E     R ++   +    +    M E   EL   ++ +  ++    + +    +   L +
Sbjct: 240 EMLEKQRLELCQLKERLTMMCRQMAELEEELNTAQKDLIKSEEV--NAKLQRDLKEALAQ 297

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA-----FREEVVVR 371
               +  +  L +        + ++  +N            L           +E +   
Sbjct: 298 REDMEERITTLEKRYLSAQREATSLHDVNDKLENELASKESLYRQSEEKNRQLQEWLEDA 357

Query: 372 RTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETARRELMQRSWNASDIK 428
           + K    L KA     +   LA  VA L +       F         +L +++      +
Sbjct: 358 KQKLQQTLQKAETLPEIEAQLAQRVAALSKAEERHGNFEERLRQLEAQLEEKNQELQRAR 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
               + D+ +  +       LSE   R  L L+        ++ +  E+ ++     E  
Sbjct: 418 QREKMNDEHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNTLSEEIANMKKLQDEL- 476

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP 515
             L ++ +L+  I++  L +      P
Sbjct: 477 --LLNKEQLVAEIERMQLEIDQLRGRP 501


>gi|319777093|ref|YP_004136744.1| hypothetical protein MfeM64YM_0364 [Mycoplasma fermentans M64]
 gi|318038168|gb|ADV34367.1| Hypothetical Protein MfeM64YM_0364 [Mycoplasma fermentans M64]
          Length = 1530

 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 98/341 (28%), Gaps = 26/341 (7%)

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P      V        ++  + ++  ++  +       A I     + N Y T       
Sbjct: 997  PAFEANSVYQKAKEYKESGKLSVEKNLKTSKEHITKIKAKIEEIKQLVNYYETKWNQAKT 1056

Query: 251  RGVSHI----EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI--ADLRDESD 304
               + I    E  + +     + ++       A+L    E +   ++ ++    L+    
Sbjct: 1057 NLDNTIKTVEEYITNNPSATNIDQL------QALLNSTKEAIETSKLEEVNLTKLQQLDK 1110

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                +    L +  S     N+L            +  +L+      ++ + +    + +
Sbjct: 1111 DLEAKYQEVLNKNNSLAAAKNKLQSSIEKVENHLNSRNSLDNLDNSYYSNL-MQNEKIDY 1169

Query: 365  REEVVVRRTKYLLNKARDRAH-VLVG--------LAIAVANLDEVVRIIRFSP---NPET 412
             E      +K  L    D    ++ G               L + +   R         T
Sbjct: 1170 NENSSTAASKKDLKSILDSMKNIVKGDDENAINHNVQFGQKLIDAIEEKRTEDIVAKQNT 1229

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             + +L + + +  D    +   D     I +      ++     I +L  A L    +  
Sbjct: 1230 LKDKLNEYN-DLKDSLKSLSSKDYYGAQITNLEANSTADEDADRITKLARANLIKESQKS 1288

Query: 473  IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            I N    L   I     I + R  L+     +  + KD+  
Sbjct: 1289 IVNTKVELEKLIGNLTKIKTDREALIRQANDQYNTNKDKFA 1329


>gi|124513484|ref|XP_001350098.1| endopeptidase, putative [Plasmodium falciparum 3D7]
 gi|23615515|emb|CAD52507.1| endopeptidase, putative [Plasmodium falciparum 3D7]
          Length = 1021

 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 99/325 (30%), Gaps = 20/325 (6%)

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
             ++  H   EV+   +  ++   + +    E  R  +  +           N     +G
Sbjct: 228 NIHLLNHEHKEVLHNMIVSMETQGVHIKDQKERERYLELQSQEKYFAFHASSNYSDEFKG 287

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             + +            +      IPY  N    +EK     +      I  L+D S   
Sbjct: 288 IYIEKNKLLKYINQKCLKDYEDKLIPYIKNNQIKVEK-----KYPFNEYIYILQDSS--- 339

Query: 307 GYRVVIELKRGASADVILNQLYR-YTSLQSLFSVNMVALNGYKPE---RFTLIGILKAFV 362
               ++ + +  +   I+NQ+Y         F  N++ L  Y+             +  +
Sbjct: 340 ---FLMTILKNVNDVEIINQVYTLLREPNHTFLNNILILQYYRNRLINYRNFKNYNEYSL 396

Query: 363 AFREEVVVRRTKYLLNKARDRA--HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                   RR  Y L     +   +    L    + +  +    +   +  T ++ L   
Sbjct: 397 KDCILNEPRRVNYFLKNFLHKILPYFFKELQFIESYISLITLRKKEKKSVNTIKKNL--E 454

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++N  D    ++   +  Y +     + L  ++      L L  +       ++N  +  
Sbjct: 455 NYNHKDEIPKLN-ASNIYYYMNEIKKVRLKNIEAEMKNNLSLYDVIKFVITLLKNSYSLE 513

Query: 481 GIEIKECLDILSSRSRLLGIIKQEL 505
            I +    + L   + +   IK+  
Sbjct: 514 MINVNPLKNELWDENIIKFEIKRGH 538


>gi|161016786|ref|NP_084017.2| liprin-alpha-3 [Mus musculus]
 gi|190148195|gb|ACE63189.1| liprin-alpha 3 [Mus musculus]
          Length = 1194

 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|29369906|gb|AAO72690.1| nuclear matrix constituent-like protein [Oryza sativa Japonica
           Group]
          Length = 374

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEV-VRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++   KA++  H+     +    L+ V V + +     + A  E  +R    S+IK  I+
Sbjct: 119 EFEQKKAKELEHINSQKEMINTKLEHVAVELQKLKDERKEATLERERREQELSEIKGTIE 178

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +++    +     +  S+ +    + +++ +L  L    I +E   L +   +   + S
Sbjct: 179 ALNNQREKLQEQRKLLHSDREA---ITVQIQQLNVLEELKIDSENKQLSLLQHDKSKLGS 235

Query: 493 SRSRLLGIIKQELLSVKDELD 513
             +           S K    
Sbjct: 236 DINVKDNHHDNSHSSPKQRFG 256


>gi|296234321|ref|XP_002762386.1| PREDICTED: liprin-alpha-3 [Callithrix jacchus]
          Length = 1194

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|293344062|ref|XP_001080725.2| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           3 [Rattus norvegicus]
 gi|293355935|ref|XP_341857.4| PREDICTED: liprin-alpha-3 [Rattus norvegicus]
          Length = 1192

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|291229331|ref|XP_002734629.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 3307

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 67/220 (30%), Gaps = 10/220 (4%)

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            SD        E   G     +   +   T  +         L G K +   +I IL+   
Sbjct: 883  SDANSVIHRQENDIGTYKTKLEIAVSELTETKEKARKLEGDLRGEKEKSVKVIDILREKS 942

Query: 363  AFREEVVVRRTKYLLNKARDRAHVL----VGLAIAVANLDEVVRIIRFSPNPETARRELM 418
              R +  V   K +L KA    HV          +    D  ++I   +   E AR+ L 
Sbjct: 943  E-RLDSQVSELKTMLKKAEGEIHVKSKCIREFERSRNRQDSEIKIEHLTSKLEEARQRLK 1001

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRD--DI 473
            +   +    ++  +         G      L +    A   +  L   +      +   +
Sbjct: 1002 ESERDCILNEERFEKRFLRLQNKGQSEKETLEKKLADAEEKVASLGQEKECKDRNESHKL 1061

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              EL     +I+E L  L +       +++ L    + L 
Sbjct: 1062 NEELEEQEDKIEELLHQLKTEKTEKSKLQERLDEADNRLA 1101


>gi|16555340|gb|AAL23696.1| liprin alpha 3 [Rattus norvegicus]
          Length = 1043

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 335 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 394

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 395 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 454

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 455 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 514

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 515 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 552


>gi|75517675|gb|AAI01519.1| Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein (liprin), alpha 3 [Homo sapiens]
 gi|75517678|gb|AAI01521.1| Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein (liprin), alpha 3 [Homo sapiens]
 gi|119572842|gb|EAW52457.1| protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein (liprin), alpha 3 [Homo sapiens]
          Length = 1194

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|14133209|dbj|BAA31629.2| KIAA0654 protein [Homo sapiens]
          Length = 1267

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 357 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 416

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 417 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 476

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 477 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 536

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 537 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 574


>gi|32189362|ref|NP_003651.1| liprin-alpha-3 [Homo sapiens]
 gi|42558941|sp|O75145|LIPA3_HUMAN RecName: Full=Liprin-alpha-3; AltName: Full=Protein tyrosine
           phosphatase receptor type f polypeptide-interacting
           protein alpha-3; Short=PTPRF-interacting protein alpha-3
 gi|158260537|dbj|BAF82446.1| unnamed protein product [Homo sapiens]
 gi|168267482|dbj|BAG09797.1| liprin-alpha-3 [synthetic construct]
          Length = 1194

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|315162667|gb|EFU06684.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
          Length = 457

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 81/246 (32%), Gaps = 16/246 (6%)

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           Y+ N    ++KI+ L   K   D   + +  +   YR  IE  +  +A  + +++     
Sbjct: 143 YKNNWETKVKKISPLKYLKFKYDDIQIYELRNWYQYRFEIEFLQKINAKKLADEV----M 198

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH------V 386
                  N     G           LK    F +       ++ L K     +      +
Sbjct: 199 YPKYSYQNGTYRKGVDMRTLN-KKWLKENKQFFKNSNRDFYEFELEKRIKNRNGKVVPGI 257

Query: 387 LVGL-AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLIDDSSYTIGSD 444
              L   A+  + + + +++F       +  ++      + +KDL ID   D++  I   
Sbjct: 258 EKFLDYHAINKIPKGIGMVKFQNWVIKNKINMLYYFDYLNMLKDLNIDPTGDANLIIPK- 316

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS-RSRLLGIIKQ 503
             +  +      +L            + ++ E     ++  +   ++ +   ++   I +
Sbjct: 317 -DLKKAHDNAVELLNQLKIEQKRKENEKLQQEYEETLVKRLKLERVVGNYEFKIPRDIIE 375

Query: 504 ELLSVK 509
            +   K
Sbjct: 376 IIQEGK 381


>gi|238810363|dbj|BAH70153.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1182

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 98/341 (28%), Gaps = 26/341 (7%)

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P      V        ++  + ++  ++  +       A I     + N Y T       
Sbjct: 84  PAFEANSVYQKAKEYKESGKLSVEKNLKTSKEHITKIKAKIEEIKQLVNYYETKWNQAKT 143

Query: 251 RGVSHI----EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI--ADLRDESD 304
              + I    E  + +     + ++       A+L    E +   ++ ++    L+    
Sbjct: 144 NLDNTIKTVEEYITNNPSATNIDQL------QALLNSTKEAIETSKLEEVNLTKLQQLDK 197

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               +    L +  S     N+L            +  +L+      ++ + +    + +
Sbjct: 198 DLEAKYQEVLNKNNSLAAAKNKLQSSIEKVENHLNSRNSLDNLDNSYYSNL-MQNEKIDY 256

Query: 365 REEVVVRRTKYLLNKARDRAH-VLVGL--------AIAVANLDEVVRIIRFSP---NPET 412
            E      +K  L    D    ++ G               L + +   R         T
Sbjct: 257 NENSSTAASKKDLKSILDSMKNIVKGNDENAINHNVQFGQKLIDAIEEKRTEDIVAKQNT 316

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + +L + + +  D    +   D     I +      ++     I +L  A L    +  
Sbjct: 317 LKDKLNEYN-DLKDSLKSLSSKDYYGAQITNLEANSTADEDADRITKLARANLIKESQKS 375

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
           I N    L   I     I + R  L+     +  + KD+  
Sbjct: 376 IVNTKVELEKLIGNLTKIKTDREALIRQANDQYNTNKDKFA 416


>gi|42558929|sp|Q91Z79|LIPA3_RAT RecName: Full=Liprin-alpha-3; AltName: Full=Protein tyrosine
           phosphatase receptor type f polypeptide-interacting
           protein alpha-3; Short=PTPRF-interacting protein alpha-3
          Length = 1192

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|194215758|ref|XP_001917332.1| PREDICTED: similar to KIAA0654 protein [Equus caballus]
          Length = 1192

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 11/210 (5%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA-----FREEV 368
           L +    +  +  L +        + ++   N            L            E +
Sbjct: 304 LAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQSEEKSRQLAEWL 363

Query: 369 VVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETARRELMQRSWNAS 425
              + K    L KA     +   LA  VA L++       F         +L +++    
Sbjct: 364 DDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLEAQLEEKNQELQ 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +    + DD +  +       LSE   R  L L+        ++ +  E+ ++     
Sbjct: 424 RARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLSEEIANMKKLQD 483

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           E    L ++ +LL  +++  + +      P
Sbjct: 484 EL---LLNKEQLLAEMERMQMEIDQLRGRP 510


>gi|151941769|gb|EDN60125.1| accumulation of dyads involved protein [Saccharomyces cerevisiae
           YJM789]
          Length = 790

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK---AFVAFREEVVVRRTKYLLNKA 380
           +  L      + L     +     +     +I + K     + F ++    + KYL  +A
Sbjct: 476 IKNLENMEQYKQLKGKIELLEKNDRIRLEKIISVFKLISERLHFMQQQHSHKIKYLQKEA 535

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             +            ++  +        N +  + EL ++   +  I+      +D    
Sbjct: 536 LTKEQQFRLEKRRWHDILNL-----KEENFQKLKSELKEKLILSEKIQ---KNAEDKLND 587

Query: 441 IGSDGTMYLSEVQTRAILELRLA---RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             ++    + ++Q +A++  RL+   + +      I +EL     EI +  + + S   L
Sbjct: 588 YMNEHQEIVEKLQNQALIASRLSTQIQESENTHKKITDELAGKQSEILKLEETILS---L 644

Query: 498 LGIIKQELLSVKDELDTP 515
              + QE L++K     P
Sbjct: 645 KEDVFQEKLNLKKLYGDP 662


>gi|88811905|ref|ZP_01127158.1| cadherin domain/calx-beta domain protein [Nitrococcus mobilis Nb-231]
 gi|88790789|gb|EAR21903.1| cadherin domain/calx-beta domain protein [Nitrococcus mobilis Nb-231]
          Length = 1908

 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 69/210 (32%), Gaps = 30/210 (14%)

Query: 722  VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
             GV   +  + +Q++++ +      + DE             + + +      +++D   
Sbjct: 1254 SGVVNFAAGESEQIVTVDVAGDTVVENDEGFTVSLSDPTDATIDADNASAAGIIRDDDGG 1313

Query: 782  EGNISEERCQELKLKEQ-----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
               ++ E     + +       F   V+  G     S+  F ++       +A D +   
Sbjct: 1314 LPVVALEAVNADQPEGDADTTAFTFRVTRSGDLSAASTVAFAVTGSGADPAQADDFAGAT 1373

Query: 837  EIGALVAVFPVNDNDQIILVSDKGTLI-----------------RVPVNEIRIASRATKG 879
                +V  F   +++QI+ V+  G  +                  +  +    A      
Sbjct: 1374 LPSGVVN-FAAGESEQIVTVNVAGDTVFENDEGFTVSLSDPTDATIDADNASAAG----- 1427

Query: 880  VVIFSTAKDERVVSVERIRESEIVDEAEST 909
              +      E VV++E +   +   +A++T
Sbjct: 1428 --LIRDDDGETVVALEAVNADQPEGDADTT 1455


>gi|259145786|emb|CAY79049.1| Ady3p [Saccharomyces cerevisiae EC1118]
          Length = 790

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK---AFVAFREEVVVRRTKYLLNKA 380
           +  L      + L     +     +     +I + K     + F ++    + KYL  +A
Sbjct: 476 IKNLENMEQYKQLKGKIELLEKNDRIRLEKIISVFKLISERLHFMQQQHSHKIKYLQKEA 535

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             +            ++  +        N +  + EL ++   +  I+      +D    
Sbjct: 536 LTKEQQFRLEKRRWHDILNL-----KEENFQKLKSELKEKLILSEKIQ---KNAEDKLND 587

Query: 441 IGSDGTMYLSEVQTRAILELRLA---RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             ++    + ++Q +A++  RL+   + +      I +EL     EI +  + + S   L
Sbjct: 588 YMNEHQEIVEKLQNQALIASRLSTQIQESENTHKKITDELAGKQSEILKLEETILS---L 644

Query: 498 LGIIKQELLSVKDELDTP 515
              + QE L++K     P
Sbjct: 645 KEDVFQEKLNLKKLYGDP 662


>gi|170049062|ref|XP_001870861.1| fast myosin heavy chain HCIII [Culex quinquefasciatus]
 gi|167870996|gb|EDS34379.1| fast myosin heavy chain HCIII [Culex quinquefasciatus]
          Length = 411

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 82/280 (29%), Gaps = 21/280 (7%)

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           +P  V    +++K  +   +  +  +       D  G  V   L+          +L   
Sbjct: 76  LPVIVRDQKLMDKYFDAGEQDVLRLLCKYMKTKDDNGGSVPEVLEDFQFHSTKFIELVEM 135

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
            S + L  V    L          +  ++ F  F    +    +  L K +    +    
Sbjct: 136 VSNKELHKVIAGHLKNLPGVYRKFLSNIREFRKFTITKMKMTAQKDLAKEKILHRMWQTN 195

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQ-------------RSWNASDIKDLIDLIDDS 437
              +  + ++ ++++       A  E                   +  +I   I+  D  
Sbjct: 196 ERNIKEIVKIEQVLQEKQTSFRAEIEEKTAIIERYKAEIKQLEQQSKREINAFIEESDQK 255

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE--------LNSLGIEIKECLD 489
            +           E+Q  A+L+ +  + T      +  E           L + + +   
Sbjct: 256 MFRYFERSDQRYEELQKEALLKAKEYQHTLEEDLRVEKENRLKKAKLTQQLKLLLNKYDK 315

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
               R++ L  +   L + ++E D  +RT          +
Sbjct: 316 DAGERTKELNALDDNLRARQEEFDEWKRTVFDPQEKKYYE 355


>gi|296212554|ref|XP_002752881.1| PREDICTED: centrosomal protein of 290 kDa [Callithrix jacchus]
          Length = 2480

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  +K   +                L     +
Sbjct: 493 KINDFLDENEALRERVGLEPKTMIDLTEFRNSKCLKQQQYRAENQILLKEIESLEEERLD 552

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +       +A   L     N ++     D I +    +       LSE Q++ 
Sbjct: 553 LKKKIRQMAQERGKRSATSGLTTEDLNLTENVFQGDRISE--RKLDLVSLKNLSEAQSK- 609

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  +++    +L   +K+ L ++K+    P
Sbjct: 610 --NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDP 666


>gi|47213640|emb|CAF90344.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 633

 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 14/191 (7%)

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL--- 377
             +   L R     +   +  V L          +   K  +    +   +R +  L   
Sbjct: 160 QELDGGLARAKKQLADEMLLRVDLENRCQSLTEEMDFRKNLLEEEVKEARQRYETRLVEV 219

Query: 378 ---NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
               K      +  GLA   A  +E +R+ R S +          +        ++    
Sbjct: 220 DSGRKQEYEYKLTEGLAEIRAQNEEQLRLFRDSMDGT-----YQTKLEELQRTSEMNQAS 274

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            + +     +    +  +  +      L + TG  R+ I      L  E      +L+ +
Sbjct: 275 GNLAREELRESAFRIESLSAQL---AALQKETGGWRERISELEEELMQEKANSRRLLTEK 331

Query: 495 SRLLGIIKQEL 505
            R +  ++ ++
Sbjct: 332 DREVAAVRSKM 342


>gi|190405227|gb|EDV08494.1| accumulates dyads protein 3 [Saccharomyces cerevisiae RM11-1a]
          Length = 790

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK---AFVAFREEVVVRRTKYLLNKA 380
           +  L      + L     +     +     +I + K     + F ++    + KYL  +A
Sbjct: 476 IKNLENMEQYKQLKGKIELLEKNDRIRLEKIISVFKLISERLHFMQQQHSHKIKYLQKEA 535

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             +            ++  +        N +  + EL ++   +  I+      +D    
Sbjct: 536 LTKEQQFRLEKRRWHDILNL-----KEENFQKLKSELKEKLILSEKIQ---KNAEDKLND 587

Query: 441 IGSDGTMYLSEVQTRAILELRLA---RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             ++    + ++Q +A++  RL+   + +      I +EL     EI +  + + S   L
Sbjct: 588 YMNEHQEIVEKLQNQALIASRLSTQIQESENTHKKITDELAGKQSEILKLEETILS---L 644

Query: 498 LGIIKQELLSVKDELDTP 515
              + QE L++K     P
Sbjct: 645 KEDVFQEKLNLKKLYGDP 662


>gi|242802261|ref|XP_002483938.1| mRNA splicing factor RNA helicase (Prp16), putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218717283|gb|EED16704.1| mRNA splicing factor RNA helicase (Prp16), putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 926

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 7/173 (4%)

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                AG     + GI   +GD  ++  I    +  Y     + +H+       S  ++ 
Sbjct: 123 EATTMAGTALGNLIGIKEDEGDSAVAAPI----EDVYKNTNKFSQHLRKDEGGASAFSKS 178

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T  +    +      E    +    Q I+ V E G GK T    F   +  GK      
Sbjct: 179 KTLREQREYLPAFAVREDLLRVIRDNQVIVVVGETGSGKTTQLTQFLYEDGYGK-QGMIG 237

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP--VNEIRIASRATKGVVI 882
            ++   + A+     V++   + L    G  IR     ++  +    T GV++
Sbjct: 238 CTQPRRVAAMSVAKRVSEEMGVDLGDLVGYAIRFEDCTSDKTVIKYMTDGVLL 290


>gi|85711023|ref|ZP_01042083.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
 gi|85694936|gb|EAQ32874.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
           [Idiomarina baltica OS145]
          Length = 856

 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI-IRFSPNPETARRELMQRSWNASDI 427
            V  T  +L   ++R  +   + I    +     +  R+  + +   + +      AS I
Sbjct: 342 TVEDTIAILRGLKERYEIHHSVEITDPAIVAAASLSHRYISDRKLPDKAIDLIDEAASSI 401

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           +  ID   +    +         E Q    L+      +    + + +EL+ L  +  E 
Sbjct: 402 RMQIDSKPEDLDRLERRIIQLKLERQA---LQKEKDDASKKRLEHLHDELDELEKKYGEL 458

Query: 488 LDILSSRSRL---LGIIKQELLSVKDELDTPRR 517
            ++ +S          IK +L  V+ E+D  RR
Sbjct: 459 EEVWNSEKAAVQGTQHIKSQLDQVRTEMDIARR 491


>gi|260174955|ref|ZP_05761367.1| phage tail tape measure protein [Bacteroides sp. D2]
 gi|315923192|ref|ZP_07919432.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697067|gb|EFS33902.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1544

 Score = 39.5 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 89/279 (31%), Gaps = 32/279 (11%)

Query: 278 AAMLEKIAELVREKRIVDIADLRDESD----RQGYRVVIELKRGASADVILNQLYRYTSL 333
             +++ + + +  K++ D+ DL   +          VVI       A   L ++     L
Sbjct: 532 QRLMKSVFKDMDLKKLKDMDDLELTNKIAEAEARRNVVIAKTNLVMAKQRLQKIDNQIIL 591

Query: 334 QSLFSVNMVALNGYKPERFTLIGILK---------------AFVAFREEVVVRRTKYLLN 378
            +  +    AL   +      + +L+               A V  ++E   +   +   
Sbjct: 592 TNNRNGYTGALKEDREAVAKEVDLLQGEVDRAVKVHSISIKAHVQSQKEAATQNKAFWTK 651

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +  D    L  +A A   L +            TA +E +++   A       +L    S
Sbjct: 652 QKDDATKALDSIASAQKKLMDAGNFKGIDATVVTAYKENIKKLKEAEK-----ELKVYDS 706

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-RNELNSLGIEIKECLDILSSRSRL 497
           ++   D    L E Q +  L L   +       +   NEL  +   I +  +  SS   L
Sbjct: 707 FSKQDDKAQKLREEQEKYKLLLEKQKFDQERMKEDSANELEQIE--INKLKE--SSEKVL 762

Query: 498 LGIIKQE---LLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
                     L ++K E +  +R  I +     E     
Sbjct: 763 RQRALNHRLELQAIKRETEDKKRKVIEDARAAFEINPQN 801


>gi|195376597|ref|XP_002047083.1| GJ12120 [Drosophila virilis]
 gi|194154241|gb|EDW69425.1| GJ12120 [Drosophila virilis]
          Length = 230

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 22/183 (12%)

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA----HVLVGLAIAVANLDEVVRI 403
           K +  +++        F    V+    +LL   R+      H   G       +   +R+
Sbjct: 37  KSKFLSMLAQQAHLYFFLIMGVL--VLFLLEAIREMRKYSNHENSGEVHLNVEMQHSMRL 94

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA------- 456
            R       A+R      +    +  +  L+   S           S  Q ++       
Sbjct: 95  FR-------AQRNFYISGFAIFLVLVIRRLVTLISAQANLLAQSEASMKQAQSATAAARS 147

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ++  +  +      D   NELN L   ++E    L+   +    +K +  S+  E D  R
Sbjct: 148 LINEKTDKAKEATEDTTLNELNKLRERVQELTADLNREKKDKEAVKSQAESLNREYD--R 205

Query: 517 RTR 519
            T 
Sbjct: 206 LTE 208


>gi|78356704|ref|YP_388153.1| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
 gi|78219109|gb|ABB38458.1| ATPase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]
          Length = 863

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 15/164 (9%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            V  T  +L   ++R  V  G+ I+ + L E V +     N   A R+L  ++ +  D  
Sbjct: 347 TVEDTISILRGLKERFEVHHGVRISDSALVEAVTL----SNRYIADRQLPDKAIDLIDEA 402

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT----GLGRDDIRNELNSLGIEI 484
             +   +  S     D       +Q   I    L R T          + NEL  L    
Sbjct: 403 AALIRTEIDSLPAELDEANRKI-MQLE-IEREALRRETDAASRERLQKLENELAELREVQ 460

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
                               + ++K++++  RR +I E   + +
Sbjct: 461 AGLNTQWERE----KGSIDSVRALKEDIERTRR-QIEEAERNYD 499


>gi|207347180|gb|EDZ73449.1| YDL239Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 764

 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK---AFVAFREEVVVRRTKYLLNKA 380
           +  L      + L     +     +     +I + K     + F ++    + KYL  +A
Sbjct: 450 IKNLENMEQYKQLKGKIELLEKNDRIRLEKIISVFKLISERLHFMQQQHSHKIKYLQKEA 509

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             +            ++  +        N +  + EL ++   +  I+      +D    
Sbjct: 510 LTKEQQFRLEKRRWHDILNL-----KEENFQKLKSELKEKLILSEKIQ---KNAEDKLND 561

Query: 441 IGSDGTMYLSEVQTRAILELRLA---RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             ++    + ++Q +A++  RL+   + +      I +EL     EI +  + + S   L
Sbjct: 562 YMNEHQEIVEKLQNQALIASRLSTQIQESENTHKKITDELAGKQSEILKLEETILS---L 618

Query: 498 LGIIKQELLSVKDELDTP 515
              + QE L++K     P
Sbjct: 619 KEDVFQEKLNLKKLYGDP 636


>gi|168009670|ref|XP_001757528.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691222|gb|EDQ77585.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 867

 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 116/393 (29%), Gaps = 44/393 (11%)

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            + +    + D + + L+  +   +  S  +           +L   L       E    
Sbjct: 53  HVPVVGSLAWDKLQHLLHSLSDRITSQSARLEKAEEQAKVIASLKDELNTLSQNVEATAN 112

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
                    A+D AH +  +      +DE+V  +R           L + +   +  K+ 
Sbjct: 113 EAKDT---HAQDLAHFMELMEARFNAIDEIVEPMRNRKTSSELNDILERLAAMENGHKET 169

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +           Q    L+   +  T         + + L   +      
Sbjct: 170 NSHARKLEGQLKQIDNHI---QQMDHDLQELDSEFTNKESQGRGMDTSDLTKRMNLLEAQ 226

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +     L+  + +   +  + +   +RT       D+E +               G    
Sbjct: 227 MKEFQELMNQVTKAHTADLEAIQKTQRTL----RADLEAKPLH----------SHGESSG 272

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT--SVLFFSSLGFVYKEKVWRLP- 607
               V   Q+R  +        D D V  L   ST+T   +   S      K+ + +   
Sbjct: 273 NNAGVDELQKRLER------KADIDVVEQLLRASTNTKEGLEALSRSMEEMKKGINKSSR 326

Query: 608 -----IGSPQARGKALINILSLNQGERITTI----------MPFPEDESSWNNLYVVFAT 652
                   P + G  LI+  S + G ++  I          +    D SS + L    AT
Sbjct: 327 FSVKMDAPPASGGSDLISTQSDDFGSQVKNIEDELATLMSRLSAKADRSSIDELEFKMAT 386

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            +GN  + + ++    +   +I  K   R E+L
Sbjct: 387 NYGNGDKTRENNGDLQDVLKEILAKKVDRAELL 419


>gi|150020781|ref|YP_001306135.1| chromosome segregation protein SMC [Thermosipho melanesiensis
           BI429]
 gi|149793302|gb|ABR30750.1| chromosome segregation protein SMC [Thermosipho melanesiensis
           BI429]
          Length = 1153

 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 95/303 (31%), Gaps = 18/303 (5%)

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG------Y 308
           +IE+      ++  TE     N   + + I E+ + K+ + I   + E  ++        
Sbjct: 161 YIERKKEALSKLAGTE----TNIERIKDVIYEIEKNKKSLYIKVKKAEKFKEYSQKLEEI 216

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++             L  L +            +        R+ +   L+       + 
Sbjct: 217 KIRYFGGIYYFEKKKLESLDKKHKNLKALLKTKLKSLAETESRWNI---LREEFNKINKK 273

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +   T  L  +   +  +L         L+++  I             L        D +
Sbjct: 274 MENFTSLLETQKIRQNQLLELKNSYTDRLNDLKNIYVEKMTKID---SLKDELKRIKDRE 330

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I LI DS     +     LS+++      L       +     +NE + +   I +  
Sbjct: 331 QEISLIFDSLILEINKQETELSKIEEERNTLLSKYSTKEMEYLKKKNEYDEIEKNIHKLE 390

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
           +   S    +  +K+ +  +K++L     R+  + + + ++ +      +     +  + 
Sbjct: 391 NEKKSLYNSVNDLKERISMIKEQLEIKYERKKDLDKEIKELSENAEKYDQKTKSLLEEIK 450

Query: 547 YVK 549
            +K
Sbjct: 451 TIK 453


>gi|300796680|ref|NP_001179752.1| CAP-Gly domain-containing linker protein 1 [Bos taurus]
 gi|297484756|ref|XP_002694531.1| PREDICTED: CAP-GLY domain containing linker protein 1 [Bos taurus]
 gi|296478561|gb|DAA20676.1| CAP-GLY domain containing linker protein 1 [Bos taurus]
          Length = 1427

 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 19/250 (7%)

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQ----GYRVVIELKRGASADVILNQLYRYT 331
            K+ +   IA   +    + ++  +            +  IE  R      I N   +  
Sbjct: 612 WKSKLETAIASHQQAMEELKVSFSKGVGTETAEFAELKTQIEKMRLDYQQEIENLQNKQD 671

Query: 332 SLQSLFSV----NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD-RAHV 386
           S +S  +         L     E+   +  +++ +   EE  +   +  LNK ++    V
Sbjct: 672 SERSAHTKELEALRAKLMQVIKEKENSLEAIQSKLDKAEEQHLVEMEDTLNKLQEAELKV 731

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI-GSDG 445
                +     ++   I  F+   + A  +L       SD+  L     +    I     
Sbjct: 732 KELEVLQAKCNEQTKVIDHFTSQLKAAEEKL-------SDLDALQKASSEGKLEIENLRQ 784

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            +  +E Q + +   + A  +      I  EL    + +    + LS  S++   +++EL
Sbjct: 785 QLEAAEKQIKNLEIEKDAESSKAS--SITKELQGKELMLNNLQENLSEVSQVKEALEKEL 842

Query: 506 LSVKDELDTP 515
            ++K++    
Sbjct: 843 QTLKEKFADA 852


>gi|323334371|gb|EGA75751.1| Ady3p [Saccharomyces cerevisiae AWRI796]
          Length = 728

 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 70/198 (35%), Gaps = 17/198 (8%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK---AFVAFREEVVVRRTKYLLNKA 380
           +  L      + L     +     +     +I + K     + F ++    + KYL  +A
Sbjct: 476 IKNLENMEQYKQLKGKIELLEKNDRIRLEKIISVFKLISERLHFMQQQHSHKIKYLQKEA 535

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             +            ++  +        N +  + EL ++   +  I+      +D    
Sbjct: 536 LTKEQQFRLEKRRWHDILNL-----KEENFQKLKSELKEKLILSEKIQ---KNAEDKLND 587

Query: 441 IGSDGTMYLSEVQTRAILELRLA---RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             ++    + ++Q +A++  RL+   + +      I +EL     EI +  + + S   L
Sbjct: 588 YMNEHQEIVEKLQNQALIASRLSTQIQESENTHKKITDELAGKQSEILKLEETILS---L 644

Query: 498 LGIIKQELLSVKDELDTP 515
              + QE L++K     P
Sbjct: 645 KEDVFQEKLNLKKLYGDP 662


>gi|156103187|ref|XP_001617286.1| clathrin heavy chain [Plasmodium vivax SaI-1]
 gi|148806160|gb|EDL47559.1| clathrin heavy chain, putative [Plasmodium vivax]
          Length = 1935

 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 108/367 (29%), Gaps = 28/367 (7%)

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
            NY+G F     +    PN+       ++ G   +        ++          + +  +
Sbjct: 816  NYEGIFYFVSSILTHLPNLTNKATDHLSYGSMND----ETSSILLASDIGSQYNNAENPS 871

Query: 216  LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG---DREQIVVTEIP 272
             ++ I    F     I     I N     R         + E+      D +      + 
Sbjct: 872  SLK-IEDVHFIMFKYIEACVKINNIQELDRICKDKNAKYNPEQIKNFLKDCKLSDPRPLI 930

Query: 273  YQVNKAAMLEKIAELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            Y  +    +E++AE + +  ++  I     + +      VI +     A           
Sbjct: 931  YVCDIHNYIEELAEYLYKNSLLKYIEVYVIKVNPNNAHKVIGVLLDLDASEDFLLNLLNN 990

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKA-----FVAFREEVVVRRTKYLLNKARDRAHV 386
                    N++ +   +     L+  L++     +        + +    LNK  +    
Sbjct: 991  IKNISNIGNLIEIAEKRNRLKLLLPWLESRSNEGYENIELHNALAKIYIDLNKDPENF-- 1048

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
               L        +++       +P  A    +    N    ++LI++   +   +     
Sbjct: 1049 ---LKNNNFYDKKLIGKYCEDLDPHLAYT--VYEKSNGECDEELINITSKN--GLFKLQA 1101

Query: 447  MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS-----RSRLLGII 501
             YL   Q+  + +  L       ++ I   + S  IE     +I  +       +L   +
Sbjct: 1102 KYLVSRQSMELWKRVLDESNKYRKNVIDQVIGSTLIESNNAEEITVTVKAFIEKKLSSEL 1161

Query: 502  KQELLSV 508
             + L  +
Sbjct: 1162 IELLEKI 1168


>gi|308495982|ref|XP_003110179.1| hypothetical protein CRE_06530 [Caenorhabditis remanei]
 gi|308245016|gb|EFO88968.1| hypothetical protein CRE_06530 [Caenorhabditis remanei]
          Length = 585

 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 81/242 (33%), Gaps = 18/242 (7%)

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            L+   +         +    +  +       L+  + F   V +     LLNK  ++  
Sbjct: 204 GLFEKPAASPSIFPQNIMFGNHDTQ-------LQRQLPFPFPVTIEGHINLLNKCNEQHQ 256

Query: 386 VLVGL--AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           ++V L   I   + +   + +  +      ++ L  ++    +   LI  +D        
Sbjct: 257 LIVMLNGKIIQKHRESEAKKVITAAEINNLKKRLSDQNVLVQEKDILIAQMDGRMKRQQE 316

Query: 444 DGTMYLSE-VQTRAILEL--RLARLTGLGRDDIRNELNSLGIEIK-ECLDILSSRSRLLG 499
                 SE  + + +LE    + +        ++ E+       + +  +I+     +  
Sbjct: 317 QELEKNSETEKFKKVLEEAGNIIKSKNQEIGKLKQEIKDHKANAEFKRKEIIDKEKEMDE 376

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
            +     ++KDEL   R+T I      +  ++ I +    V        KRV  +   AQ
Sbjct: 377 QV----TNLKDELAAARKT-IEMKETTIMTQEKIHKNKESVWEKEKNLEKRVLENNISAQ 431

Query: 560 RR 561
            R
Sbjct: 432 NR 433


>gi|149055940|gb|EDM07371.1| rCG54528 [Rattus norvegicus]
          Length = 1034

 Score = 39.5 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 284 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 343

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 344 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 403

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 404 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 463

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 464 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|109255234|ref|NP_079390.3| centrosomal protein of 290 kDa [Homo sapiens]
 gi|116241294|sp|O15078|CE290_HUMAN RecName: Full=Centrosomal protein of 290 kDa; Short=Cep290;
           AltName: Full=Bardet-Biedl syndrome 14 protein; AltName:
           Full=Cancer/testis antigen 87; Short=CT87; AltName:
           Full=Nephrocystin-6; AltName: Full=Tumor antigen se2-2
 gi|73761783|gb|AAZ83370.1| nephrocystin-6 [Homo sapiens]
 gi|225000922|gb|AAI72566.1| Centrosomal protein 290kDa [synthetic construct]
 gi|225356522|gb|AAI56463.1| Centrosomal protein 290kDa [synthetic construct]
          Length = 2479

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  +K   +                L     +
Sbjct: 492 KISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLD 551

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +       +A   L     N ++     D I +    +       +SE Q++ 
Sbjct: 552 LKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQSK- 608

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  +++    +L   +K+ L ++K+    P
Sbjct: 609 --NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDP 665


>gi|289582242|ref|YP_003480708.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
 gi|289531795|gb|ADD06146.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
          Length = 1189

 Score = 39.5 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 56/189 (29%), Gaps = 10/189 (5%)

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   ++A     E+    R +  +   R +  +         +  E  ++       +T 
Sbjct: 328 LEDKIEASEEQIEDAESTRREAFVQIDRKQETIEELEDEMREHKLEKAQLKTEIQERKTK 387

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA--ILELRLARLTGLG-- 469
           R EL           D +        +   +     ++ Q     +L+    R   +   
Sbjct: 388 RDELEAEIDAVDTEFDELKADLAERKSDLEEAKTEKNDRQREQDRLLDEARRRSNTISEK 447

Query: 470 ---RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
               ++ R EL  L     +    L    +    I + +  +K E    RRT+     LD
Sbjct: 448 ENTIEERRKELPELENRRSDLERELEKAEKNRANISEVVDDLKTE---KRRTQSEMDELD 504

Query: 527 MEDEDCIVR 535
            + +     
Sbjct: 505 DKIQAKQQE 513


>gi|149641994|ref|XP_001514499.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 448

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 15/193 (7%)

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA---FREEVVVRRTKYLLNKAR 381
             L+    L+   S   + ++  K E  T I  L+  +     +++V+  R    L   +
Sbjct: 53  ELLHNLQLLKIELSQKNLMIDNLKVEYITKIEELEEKLNDALHQKQVLTLRLDSQLTLQQ 112

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
           + A     L        E+  I+      E    +L +R+ +       ++L DD    +
Sbjct: 113 EDARKHQELMK-----QEMETILLRQKQLEETNHQLRERAGDIRRSLRDLELTDDHYAKL 167

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                  LSE Q  +I E    R+  +    ++ E+N L ++  +  + L+     L  +
Sbjct: 168 KV-----LSEDQL-SIPEYVSIRVYEV-VTPLKREINELQVKKVDLWEELNDTKSQLKRM 220

Query: 502 KQELLSVKDELDT 514
            +     +     
Sbjct: 221 AENYEDERRNHSD 233


>gi|10438210|dbj|BAB15196.1| unnamed protein product [Homo sapiens]
          Length = 720

 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  +K   +                L     +
Sbjct: 127 KISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLD 186

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +       +A   L     N ++     D I +    +       +SE Q++ 
Sbjct: 187 LKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQSK- 243

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  +++    +L   +K+ L ++K+    P
Sbjct: 244 --NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDP 300


>gi|297462079|ref|XP_581408.3| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           3 isoform 1 [Bos taurus]
 gi|297485824|ref|XP_002695250.1| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           3 [Bos taurus]
 gi|296477654|gb|DAA19769.1| protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein (liprin), alpha 3 [Bos taurus]
          Length = 1108

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 65/210 (30%), Gaps = 11/210 (5%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA-----FREEV 368
           L +    +  +  L +        + ++   N            L            E +
Sbjct: 295 LAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQSEEKSRQLAEWL 354

Query: 369 VVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETARRELMQRSWNAS 425
              + K    L KA     +   LA  VA L++       F         +L +++    
Sbjct: 355 DDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLEAQLEEKNQELQ 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +    + DD +  +       LSE   R  L L+        ++ +  E+ ++     
Sbjct: 415 RARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLSEEIANMKKLQD 474

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           E    L ++ +LL  +++  + +      P
Sbjct: 475 EL---LLNKEQLLAEMERMQMEIDQLRGRP 501


>gi|289620555|emb|CBI52916.1| unnamed protein product [Sordaria macrospora]
          Length = 1005

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 2/140 (1%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + + + D   ++ I +           + +HM  +    +    +    + +      + 
Sbjct: 257 MGVKEEDTDSALPIAVEEVGKSKNMNKFSEHMKKEEGASNFSQTKSLREQREFLPAFAVR 316

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           E+  + ++   Q ++ + E G GK T    F   +  GK       ++   + A+     
Sbjct: 317 EDLLRVIR-DNQVVIVIGETGSGKTTQLTQFLYEDGYGK-TGMIGCTQPRRVAAMSVAKR 374

Query: 847 VNDNDQIILVSDKGTLIRVP 866
           V +  ++ L S  G  IR  
Sbjct: 375 VAEEMEVKLGSTVGYAIRFE 394


>gi|255721133|ref|XP_002545501.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240135990|gb|EER35543.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 845

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 100/313 (31%), Gaps = 41/313 (13%)

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR-GKALINILSLNQGERITT 632
           ED V     V+    VL F S G         L   + + +  + +++ +++     I +
Sbjct: 65  EDLVDIKLDVTNMNQVLLFKSSG--------ELVTVNWKDKVSQPIVSNINIKSNLPILS 116

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVE 688
           ++          +L  +  T   + ++N  S   +     +R+ +    +      ++  
Sbjct: 117 VISVK-------HLSFIIITGRIDKKKNGSSPHTRYINYFDRNQETLTPIIEVSNSINFA 169

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD---QVISM------- 738
                + I   T   +   F +S I              +L   D   ++I         
Sbjct: 170 VSLDNSKIAFVTSDNEVNLFDLSDIYKLDNIE-------NLKDDDISNEIIPFVYKSAIT 222

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           AI +  D+                 LI+   + +     D       +E+    L    +
Sbjct: 223 AIAVSNDSIVALGTTSGPIQIVYGGLITPKPQRVLKWHLDQVKSLCFTEDNNYLLSGGME 282

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L      +   T    F           + D  K + I   + V  +++  +I+++S 
Sbjct: 283 KVLVF----WQLETEKKQFLPRLNGTIEKISIDTHKNDYISLELRVDSIDNIHEILVISA 338

Query: 859 KGTLIRVPVNEIR 871
              + R+ VN IR
Sbjct: 339 IDLVSRLSVNTIR 351


>gi|118100027|ref|XP_001232953.1| PREDICTED: similar to huntingtin interacting protein 1 [Gallus
           gallus]
          Length = 1018

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 9/155 (5%)

Query: 411 ETARRELMQRSW-NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           +  +  L+++ +     +K+ ++     S   G      +SE++     +  L +     
Sbjct: 366 KDDKDRLIEQLYREIGALKEELESFKAESERRGLQLRGRISELEAELAEQRHLKQQALDD 425

Query: 470 RDDIRNELNSLGIEIKECLDI---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            + +R EL  L  + ++       L+   R     +Q    +K++      + +V+   D
Sbjct: 426 SEFLRTELEELKKQREDTEKAQRSLTEIERRAQANEQRYSKLKEKY-----SELVQNHAD 480

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
           +  ++  V + + V     G V+R    +  + +R
Sbjct: 481 LLRKNAEVTKQVTVARQAQGDVEREKKELEDSFQR 515


>gi|170046220|ref|XP_001850672.1| jumonji/ARID domain-containing protein 1A [Culex quinquefasciatus]
 gi|167869058|gb|EDS32441.1| jumonji/ARID domain-containing protein 1A [Culex quinquefasciatus]
          Length = 1443

 Score = 39.1 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 86/253 (33%), Gaps = 17/253 (6%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE---VVVRRTKY 375
           +A+    +L    + Q         L+    +  T +  L+ F    E        + +Y
Sbjct: 596 NAEREAFELLSDDARQCEICKTTCFLSAVTCKCTTNLACLRHFAELCECPAENHTLKYRY 655

Query: 376 LLN-------KARDRAHVLVG-LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            L+       K + +A      L      LD  +         +   +E   + +  S I
Sbjct: 656 TLDELPLMVQKLKVKAESFEKWLFKVRDVLDPAIHTNITLDELQDVAQEAETQKFPNSVI 715

Query: 428 KDLIDL-IDDSSYTIGSDGTMYLSEVQTR--AILELRLARLTGLGRDDIRNELNSLGIEI 484
            + ++  I ++   I     + +++++TR     E    +LT    D   NE+N+L   I
Sbjct: 716 LERLNFSILEAQKCITVIQQLDINKIRTRTRNSAECAKYKLTLEELDMFVNEINNLRCII 775

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E   +   +      +KQ   ++K        T I +    +E+   +  E   +    
Sbjct: 776 REGDSVRELQKIGKEWVKQVESALKTRFKD---TNIQQLTHLIEEGSSLCIELPQIAQLK 832

Query: 545 LGYVKRVPLSVYR 557
             Y +    +  R
Sbjct: 833 DRYAQFKWYTQVR 845


>gi|150026438|ref|YP_001297264.1| dihydrolipoyllysine-residue succinyltransferasecomponent of
           2-oxoglutarate dehydrogenase complex [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772979|emb|CAL44463.1| Dihydrolipoyllysine-residue succinyltransferasecomponent of
           2-oxoglutarate dehydrogenase complex [Flavobacterium
           psychrophilum JIP02/86]
          Length = 403

 Score = 39.1 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+  +   +GD V   A+V H D D ++         A +  +  +  ++  +   +
Sbjct: 51  EASGIITLKAEEGDAVAVGAVVCHIDTDGEKPSGSAPVAEAPKAEVKVEAPKVAPVAQKT 110

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD----FRISNRSGKGIRATDVSKI 835
                 S    + L  K      V   G G R ++ D             G R ++ +K+
Sbjct: 111 YAAQTPSPAARKILDEKNIQPSDVVGTGKGGRITTEDAVNAVPSMGTPTGGSRGSERTKL 170

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVI 882
           + +   VA   V   ++  +++    +   P+N IR   +        GV +
Sbjct: 171 SMLRRKVAERLVAAKNETAMLTTFNEVNMTPINNIRNQYKDAFKAKHNGVGL 222


>gi|297692554|ref|XP_002823610.1| PREDICTED: centrosomal protein of 290 kDa-like [Pongo abelii]
          Length = 2479

 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  +K   +                L     +
Sbjct: 492 KINDFLDENEALRERVGLEPKTMIDLTEFRNSKRLKQQQYRAENQILLKEIESLEEERLD 551

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +       +A   L     N ++     D I +    +       +SE Q++ 
Sbjct: 552 LKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQSK- 608

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  +++    +L   +K+ L ++K+    P
Sbjct: 609 --NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDP 665


>gi|239624035|ref|ZP_04667066.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522066|gb|EEQ61932.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1186

 Score = 39.1 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 93/307 (30%), Gaps = 45/307 (14%)

Query: 343  ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE--- 399
             +          I  L+      E       + +L K ++   +   +A A A ++E   
Sbjct: 828  FIKENTIRVRGEIRKLEEEFQSLEAGSGSSEQIILGKKQEIERIREQIAGAQARMEELET 887

Query: 400  VVRIIRFSPNPETA--------RRELMQRSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLS 450
            V+       +   A        R EL  R      D+  +    +     + +  +   +
Sbjct: 888  VIAGHTARKDAMAAEQKGFFAKREELTARLAELDKDMFRVQASQEKLEEKLEASTSYMWT 947

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
            E +      L L +       ++R  ++ L   IK   +I  +       + +    +K 
Sbjct: 948  EYEMTFSTALELKKEEYQSASEVRKRIDELKSRIKGLGNINVNSIEDYKEVSERYGFMKT 1007

Query: 511  ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS-VYRAQRRGGKGRSGV 569
            + D      +++   ++E     +   M           R     V+R    GG+G   +
Sbjct: 1008 QYDD-----LIQAQAELEKIIEELDMGMRRQFQEKFAEIRAEFDKVFRELFGGGRGTLEL 1062

Query: 570  VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             M DED +     +                               GK L N++ L+ GE+
Sbjct: 1063 -MEDEDILEAGIQIIAQPP--------------------------GKKLQNMMQLSGGEK 1095

Query: 630  ITTIMPF 636
              T +  
Sbjct: 1096 ALTAISL 1102


>gi|281348368|gb|EFB23952.1| hypothetical protein PANDA_006287 [Ailuropoda melanoleuca]
          Length = 1176

 Score = 39.1 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 62/203 (30%), Gaps = 15/203 (7%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +    +  +  L +        + ++   N            L   +           
Sbjct: 295 LAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQLQQT-------- 346

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETARRELMQRSWNASDIKDLID 432
              L KA     +   LA  VA L++       F         +L +++      +    
Sbjct: 347 ---LQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLEAQLEEKNQELQRARQREK 403

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           + DD +  +       LSE   R  L L+        ++ +  E+ ++     E    L 
Sbjct: 404 MNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLSEEIANMKKLQDEL---LL 460

Query: 493 SRSRLLGIIKQELLSVKDELDTP 515
           ++ +LL  +++  + +      P
Sbjct: 461 NKEQLLAEMERMQMEIDQLRGRP 483


>gi|42559470|sp|Q86RN8|MYSP_BOOMI RecName: Full=Paramyosin
 gi|27596792|gb|AAO20875.1|AF479582_1 paramyosin [Rhipicephalus microplus]
          Length = 873

 Score = 39.1 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 7/156 (4%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP--ETARRELMQRSWNASDIK---DL 430
            L KA   A  L      +  L+  ++          E ++REL Q+      ++   + 
Sbjct: 353 DLEKATAHAQNLEKRVAQLEKLNIDLKSKVEELTILLEQSQRELRQKVAEIQKLQHEYEK 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +    D+           LSE +++    +R      L    + NE + L    KE   +
Sbjct: 413 MREQRDALQRENKKLVDDLSEAKSQLADAIRRLHEYELEIKRLENERDELAAAYKEAETL 472

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
                     +  EL  V+ E    RR +I E  ++
Sbjct: 473 RKQEEAKCQRLTAELAQVRHEY--ERRLQIKEEEIE 506


>gi|265750915|ref|ZP_06086978.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_33FAA]
 gi|263237811|gb|EEZ23261.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_33FAA]
          Length = 836

 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T    LK F    E VV     Y  +  +    + +G   +   ++   +I         
Sbjct: 464 THYQNLKHFAEDHEGVVNGAMLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEEVIAD 523

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   +     NA   K L D++ D  Y       +   E Q                   
Sbjct: 524 ASEIVGSEYINAD--KYLQDIVRDKRYWETKRQNIRKREKQME------------ETIAK 569

Query: 473 IRNELNSLGIEIKE-CLDILSSRSRLLG----IIKQELLSVKDELDTPRRT-----RIVE 522
              EL  L    KE          +LL      I+  +  +K+      RT      + +
Sbjct: 570 YEEELQELEKSRKEILRKAKEDAEKLLQESNARIENTIRIIKEAQADKERTQSARQELTD 629

Query: 523 GLLDMEDEDCIVREDMVV 540
               +ED +   +ED ++
Sbjct: 630 FKNQIEDIEKKNKEDEII 647


>gi|212694400|ref|ZP_03302528.1| hypothetical protein BACDOR_03927 [Bacteroides dorei DSM 17855]
 gi|237727622|ref|ZP_04558103.1| DNA mismatch repair protein MutS [Bacteroides sp. D4]
 gi|212662901|gb|EEB23475.1| hypothetical protein BACDOR_03927 [Bacteroides dorei DSM 17855]
 gi|229434478|gb|EEO44555.1| DNA mismatch repair protein MutS [Bacteroides dorei 5_1_36/D4]
          Length = 836

 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T    LK F    E VV     Y  +  +    + +G   +   ++   +I         
Sbjct: 464 THYQNLKHFAEDHEGVVNGAMLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEEVIAD 523

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   +     NA   K L D++ D  Y       +   E Q                   
Sbjct: 524 ASEIVGSEYINAD--KYLQDIVRDKRYWETKRQNIRKREKQME------------ETIAK 569

Query: 473 IRNELNSLGIEIKE-CLDILSSRSRLLG----IIKQELLSVKDELDTPRRT-----RIVE 522
              EL  L    KE          +LL      I+  +  +K+      RT      + +
Sbjct: 570 YEEELQELEKSRKEILRKAKEDAEKLLQESNARIENTIRIIKEAQADKERTQSARQELTD 629

Query: 523 GLLDMEDEDCIVREDMVV 540
               +ED +   +ED ++
Sbjct: 630 FKNQIEDIEKKNKEDEII 647


>gi|224085002|ref|XP_002195849.1| PREDICTED: protein tyrosine phosphatase, receptor type, f
           polypeptide (PTPRF), interacting protein (liprin), alpha
           1 [Taeniopygia guttata]
          Length = 1142

 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+    + S +    +   L +    +  +  L +        + ++  LN        
Sbjct: 270 KDLIKSEEMSSKYQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELA 329

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP--- 410
               L      +   +    +    K +        L    A L + +  +  +      
Sbjct: 330 NKESLHRQCEEKARHLQELLELAEQKLQQTMRKAETLPEVEAELAQRIAALTKAKERHGS 389

Query: 411 -----ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
                     +L +++   +  +    + ++ +  +       LSE   R  L L+    
Sbjct: 390 IEEHLRQLETQLEEKNQELARARQREKMNEEHNKRLSDTVDRLLSESNERLQLHLKERMA 449

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
               ++ +  EL +   +I+E       + RL   I +  L V
Sbjct: 450 ALEEKNTLLQELENTQKQIEEHQ---HDKRRLSDEIDKLRLEV 489


>gi|158291035|ref|XP_312553.4| AGAP002399-PA [Anopheles gambiae str. PEST]
 gi|157018181|gb|EAA07922.4| AGAP002399-PA [Anopheles gambiae str. PEST]
          Length = 626

 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%)

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            + + E  LARL  L +  I      L  EI E   I  S   LL     +L  
Sbjct: 518 AQKVREDELARLNELEKQAIEENNEELAKEIAELKAIAQSDEELLKRQAAKLEE 571


>gi|195121796|ref|XP_002005404.1| GI19089 [Drosophila mojavensis]
 gi|193910472|gb|EDW09339.1| GI19089 [Drosophila mojavensis]
          Length = 2351

 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 22/264 (8%)

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           R +    E+    N+ A   K  E +  K+I D+ +   + +    + V +LK+   +  
Sbjct: 221 RLKEKCDELQIVQNQNAQYSKTIEDLN-KKIEDLNETMFQHNMATEKFVDKLKKELDSKE 279

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY--LLNKA 380
            L ++Y+ T  +++   N +       +R  L      +     E  + +  +   LN+ 
Sbjct: 280 KLVEIYKSTESENVAERNELLKGISDLKRM-LTDTTDQYGELEAEFQLAKQTHAEELNEK 338

Query: 381 R--------DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + AH    L  A     E   I + +P    A R +               
Sbjct: 339 NATIESLRTEIAHANDLLKEAQEQSLES-AICKLAPTAAVASRLMRSDMSLTELYSLYAK 397

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-----DIRNELNSLGIEIKEC 487
             ++       +  + L   Q ++I++    R     +       +  E   +  +  E 
Sbjct: 398 NSEELEAKNRENAQLKL---QIKSIVDEINERAPVFKKQDEDYSKLTEEHQLVLQQRDEL 454

Query: 488 LD-ILSSRSRLLGIIKQELLSVKD 510
           +D  L+    L          VK+
Sbjct: 455 VDKKLALEQELEQAQFDVTRHVKE 478


>gi|125527843|gb|EAY75957.1| hypothetical protein OsI_03874 [Oryza sativa Indica Group]
          Length = 987

 Score = 39.1 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEV-VRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++   K ++  H+     +    L+ V V + +     + A  E  +R    S+IK  I+
Sbjct: 636 EFEQKKTKELEHINSQKEMINTKLEHVAVELQKLEDERKEATLERERREQELSEIKGTIE 695

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +++    +     +  S+ +    + +++ +L  L    I +E   L +   +   + S
Sbjct: 696 ALNNQREKLQEQRKLLHSDREA---ITVQIQQLNVLEELKIDSENKQLSLLQHDKSKLGS 752

Query: 493 SRSRLLGIIKQELLSVKDELD 513
             +           S K    
Sbjct: 753 DINVKDNHHDNSHSSPKQRFG 773


>gi|114321705|ref|YP_743388.1| ATPase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228099|gb|ABI57898.1| ATPase AAA-2 domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 864

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRI-IRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +L   ++R  V  G+ I    +    ++  R+  + +   + +      AS IK  ID  
Sbjct: 348 ILRGLKERYEVHHGVEITDPAIVAAAQLSHRYITDRQLPDKAIDLVDEAASRIKMEIDSK 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +    +         E +  A  E   +R      D +  E+N L  E K   +I +S 
Sbjct: 408 PEEMDRLERRLIQLKIEREALAKEEDDASR---KRLDALEGEINELEDEYKALEEIWNSE 464

Query: 495 S---RLLGIIKQELLSVKDELDTPRR 517
                    IK++L   + ELDT RR
Sbjct: 465 KAAVEGTQSIKEQLERARQELDTARR 490


>gi|313227430|emb|CBY22577.1| unnamed protein product [Oikopleura dioica]
          Length = 1237

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 116/355 (32%), Gaps = 28/355 (7%)

Query: 227 TGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIVVTEIPYQV-NKAAML 281
               I G    K  Y   +            +HI+K    +E+    E   QV     + 
Sbjct: 158 MFEEISGSAEYKQDYEKAKIEQRDADDASKAAHIKKKGIAQERKEAREEVAQVHQYEKLQ 217

Query: 282 EKIAELVREKRI--VDIADLRDESDRQGYRVVIELKRGASAD--VILNQLYRYTSLQSLF 337
           E++ E   ++++  + I D      ++  R++ +             +++ +  S     
Sbjct: 218 EELEEARIQEKLFQLFIIDNNVTKYKEQLRIMKKKHDKVQKKKAECEDEIKKEKSEIGKI 277

Query: 338 SVNMVALNGYKPERFTLIGILK----------AFVAFREEVVVRRTKYLLNKARDRAHVL 387
              + ++     E+ T I  LK          + +  + E+V +R    +     +  ++
Sbjct: 278 QREVNSVEKKCEEKNTAIQELKPAIIKARENTSHIVHKLEIVQKRLDAAMKTHEQKQSII 337

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL   + +L+   ++       +   + +  +    ++   L + +   S  +      
Sbjct: 338 KGLEGQMEDLENRRQVFEEQAKIDENEKNIQLQQSQLTEYNQLKEKVKIKSSELLDKIRQ 397

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
           Y  E Q      ++L     +              E    LD L+         K++L  
Sbjct: 398 YEREQQNDQ-EAIQLKERRQMDIQQTLKSKEQEKEEHSNRLDGLNDY---NKRTKEQLSQ 453

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +       RRT I E +   + +   + +D+   +  LG          RAQRR 
Sbjct: 454 L-----DKRRTAIREEVQSADSQIASLNKDLEKVIHQLGSANVEKTESRRAQRRS 503


>gi|254884292|ref|ZP_05257002.1| DNA mismatch repair protein MutS [Bacteroides sp. 4_3_47FAA]
 gi|254837085|gb|EET17394.1| DNA mismatch repair protein MutS [Bacteroides sp. 4_3_47FAA]
          Length = 834

 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T    LK F    E VV     Y  +  +    + +G   +   ++   +I         
Sbjct: 462 THYQNLKHFAEDHEGVVNGAMLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEEVIAD 521

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   +     NA   K L D++ D  Y       +   E Q                   
Sbjct: 522 ASEIVGSEYINAD--KYLQDIVRDKRYWETKRQNIRKREKQME------------ETIAK 567

Query: 473 IRNELNSLGIEIKECLDILSSRSRLL-----GIIKQELLSVKDELDTPRRT-----RIVE 522
              EL  L    KE L      +  L       I+  +  +K+      RT      + +
Sbjct: 568 YEEELQELEKSRKEILRKAKEDAEKLIQESNARIENTIRIIKEAQADKERTQSARQELTD 627

Query: 523 GLLDMEDEDCIVREDMVV 540
               +ED +   +ED ++
Sbjct: 628 FKNQIEDIEKKNKEDEII 645


>gi|324504183|gb|ADY41807.1| Protein humpback-1 [Ascaris suum]
          Length = 894

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 115/335 (34%), Gaps = 31/335 (9%)

Query: 474 RNELNSLGIEI----KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
           R EL  L   I        D  ++R      I  E  +++  L        +    +   
Sbjct: 300 RPELEELLERIVSGAAAIADSENTRDERKKRIVDECNNLRQALQD------LLAEYENNR 353

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI--VSTHT 587
                 ED+ + + HLG+  +    + R  RR           D +    + I     H 
Sbjct: 354 GRAEPSEDLDLAMVHLGHKAK---DLRRHLRRAIVDHVSDAFLDTNTPLMMLIESAKRHD 410

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN--N 645
                 + G +++E   +L   +     + +  + +   G RI        D+ +    N
Sbjct: 411 QQATI-NNGKLFQEHADKLVQVA-----QLVCQMSNNEDGIRIVRYAAIQVDKLAPQVVN 464

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
              +   +   V R+ +  F  +    K+ +   + DE++SV+     ++  +   +   
Sbjct: 465 AAHLLCARDSQVARDNMDAFKDVWLD-KVRLLTMAVDELISVDDFLAVSEAHIIEDVKIG 523

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           ++  +S       R + G+RG SL        +  V+ A+ D      Y + +    +++
Sbjct: 524 IQAVLSGDGYMLDRTAGGIRGRSLR-------VCSVVDAEMDMSSANPYTERVRKATKML 576

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
             +     +++ +  V    S E     +  ++ I
Sbjct: 577 RENVINEFAVRAERVVNKLESGEAGDPNEDVDEVI 611


>gi|312899127|ref|ZP_07758505.1| DNA repair protein RecN [Megasphaera micronuciformis F0359]
 gi|310619794|gb|EFQ03376.1| DNA repair protein RecN [Megasphaera micronuciformis F0359]
          Length = 561

 Score = 39.1 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 13/157 (8%)

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            + +  +  A    H+  GL  A+A +D   R    +      RR L++ +      + +
Sbjct: 211 EKLEADIRTASHAEHITEGLQTAMAAMDGSERRQGMTDGIAEIRRSLLKNASYDPRFEVM 270

Query: 431 IDLIDDSSYTIGSDGTMY-------------LSEVQTRAILELRLARLTGLGRDDIRNEL 477
               +  SY +                    L  +Q+R     +L R  G   +DI    
Sbjct: 271 AAKAEALSYELEELRDEISSYADGMSFDGPALDRMQSRLATIEKLKRKYGFSVEDILAFA 330

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
                + ++  D  ++ + L   I      ++ E D 
Sbjct: 331 EKAKADREKLSDSENALADLNKQISSCEKQLRQEGDD 367


>gi|149041007|gb|EDL94964.1| centromere autoantigen F [Rattus norvegicus]
          Length = 2654

 Score = 38.8 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD-LIDLIDDSSYTIGS 443
            H+          L+++      +   +     L Q    +   K+ LI   ++S   I +
Sbjct: 1963 HIDADKKKQCHILEQLKESKHHADLFKDRVENLEQELMLSEKNKEHLIFQAENSKAEIQT 2022

Query: 444  DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
              T   +  Q    LEL L   T   ++++  EL +   +I +   I SS  RLL   +Q
Sbjct: 2023 LKTEIQTMDQNLQDLELELTN-TRSEKENLMKELKNEQEQISKLETINSSIERLLKDKEQ 2081

Query: 504  ELLSVKDE 511
            E + VK+E
Sbjct: 2082 EKVQVKEE 2089


>gi|324504275|gb|ADY41846.1| Rab GTPase-binding effector protein 1 [Ascaris suum]
          Length = 446

 Score = 38.8 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S     AR EL      +  ++++   I +    I        S  + RA LE+ LA   
Sbjct: 268 SEELGLARSELSTLHDASHKMEEMDKRIIEYQAVIEELEKQVKSMQKERADLEMTLA-AY 326

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                 ++ EL++     K+ + +  +    L  I+Q    V+ + +  
Sbjct: 327 KQKCTALQQELDTSEAVQKDFVKLSQNLQIELEKIRQAEQEVRWQFNDD 375


>gi|150004986|ref|YP_001299730.1| DNA mismatch repair protein MutS [Bacteroides vulgatus ATCC 8482]
 gi|294776366|ref|ZP_06741845.1| MutS2 family protein [Bacteroides vulgatus PC510]
 gi|149933410|gb|ABR40108.1| DNA mismatch repair protein MutS [Bacteroides vulgatus ATCC 8482]
 gi|294449782|gb|EFG18303.1| MutS2 family protein [Bacteroides vulgatus PC510]
          Length = 836

 Score = 38.8 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T    LK F    E VV     Y  +  +    + +G   +   ++   +I         
Sbjct: 464 THYQNLKHFAEDHEGVVNGAMLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEEVIAD 523

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   +     NA   K L D++ D  Y       +   E Q                   
Sbjct: 524 ASEIVGSEYINAD--KYLQDIVRDKRYWETKRQNIRKREKQME------------ETIAK 569

Query: 473 IRNELNSLGIEIKECLDILSSRSRLL-----GIIKQELLSVKDELDTPRRT-----RIVE 522
              EL  L    KE L      +  L       I+  +  +K+      RT      + +
Sbjct: 570 YEEELQELEKSRKEILRKAKEDAEKLIQESNARIENTIRIIKEAQADKERTQSARQELTD 629

Query: 523 GLLDMEDEDCIVREDMVV 540
               +ED +   +ED ++
Sbjct: 630 FKNQIEDIEKKNKEDEII 647


>gi|219119962|ref|XP_002180731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408204|gb|EEC48139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1022

 Score = 38.8 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 58/192 (30%), Gaps = 22/192 (11%)

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L    S       N+ A +    ER  LI   K            R     +K   R   
Sbjct: 581 LQSRLSTYQSVRENLHAEHAAVLERKNLIETRKE--------ETERVAQEKSKQEARVKA 632

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
               A        +VR  R        ++  +Q+  +  + K  +  +           T
Sbjct: 633 EEEAARKAEEEQRIVREQRLRE---IEKQRKIQQELDNQEKKRFLAAMGKK--------T 681

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG--IIKQE 504
             +SE Q   I    L R      +  R E      E  + LD L    R+    +IK++
Sbjct: 682 EDISEEQIAKIDTEALQREHEAKINKEREEAERKTRETAKKLDYLVRAIRIEELPLIKKK 741

Query: 505 LLSVKDELDTPR 516
               K +LD  R
Sbjct: 742 YEE-KTKLDKER 752


>gi|324504271|gb|ADY41844.1| Protein humpback-1 [Ascaris suum]
          Length = 902

 Score = 38.8 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 115/335 (34%), Gaps = 31/335 (9%)

Query: 474 RNELNSLGIEI----KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
           R EL  L   I        D  ++R      I  E  +++  L        +    +   
Sbjct: 300 RPELEELLERIVSGAAAIADSENTRDERKKRIVDECNNLRQALQD------LLAEYENNR 353

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI--VSTHT 587
                 ED+ + + HLG+  +    + R  RR           D +    + I     H 
Sbjct: 354 GRAEPSEDLDLAMVHLGHKAK---DLRRHLRRAIVDHVSDAFLDTNTPLMMLIESAKRHD 410

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN--N 645
                 + G +++E   +L   +     + +  + +   G RI        D+ +    N
Sbjct: 411 QQATI-NNGKLFQEHADKLVQVA-----QLVCQMSNNEDGIRIVRYAAIQVDKLAPQVVN 464

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
              +   +   V R+ +  F  +    K+ +   + DE++SV+     ++  +   +   
Sbjct: 465 AAHLLCARDSQVARDNMDAFKDVWLD-KVRLLTMAVDELISVDDFLAVSEAHIIEDVKIG 523

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           ++  +S       R + G+RG SL        +  V+ A+ D      Y + +    +++
Sbjct: 524 IQAVLSGDGYMLDRTAGGIRGRSLR-------VCSVVDAEMDMSSANPYTERVRKATKML 576

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
             +     +++ +  V    S E     +  ++ I
Sbjct: 577 RENVINEFAVRAERVVNKLESGEAGDPNEDVDEVI 611


>gi|321257028|ref|XP_003193443.1| centromeric protein e (cenp-e protein),putative [Cryptococcus
           gattii WM276]
 gi|317459913|gb|ADV21656.1| centromeric protein e (cenp-e protein),putative [Cryptococcus
           gattii WM276]
          Length = 1799

 Score = 38.8 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 13/214 (6%)

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           R + L++  S  +  +   + +   L    +  V   E  +    K L    +D+A +  
Sbjct: 749 RNSQLEATRSDLVATIKELEGKVLELRKSREELVIEDEGRLREVQKQLDATVKDKAEIEH 808

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI-KDLIDLIDDSSYTIGSDGTM 447
            + +     DEV    +     + AR+E+         + K+  D+   +          
Sbjct: 809 KVKLLE---DEVAARKKAEEGEKAARKEVENIKSQLELLQKEHADIHSSAENASTRLVEY 865

Query: 448 YLS----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS-RSRLLGIIK 502
            +S     VQ   +L  +++  T L  + +RNE + +  +     + L S +   +    
Sbjct: 866 EISISTLTVQINDLLSAKMSHETAL--EQLRNEHDEMKKQRDRAAEDLESFQKEAMANEA 923

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           + L  +++E+   RR  + E    + D      E
Sbjct: 924 KVLRELREEIGNLRR--LREDEEAVWDRSKAEME 955


>gi|327403531|ref|YP_004344369.1| hypothetical protein Fluta_1538 [Fluviicola taffensis DSM 16823]
 gi|327319039|gb|AEA43531.1| hypothetical protein Fluta_1538 [Fluviicola taffensis DSM 16823]
          Length = 1115

 Score = 38.8 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 48/139 (34%), Gaps = 12/139 (8%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE--TARRELMQRSWNASDIKDLIDLID 435
            +    +     L      ++E+++ +      +      +LM+++ +   +K+  + +D
Sbjct: 570 EEKNKLSEQDEELLKQQELIEELLKEVMDDELKKLLDDLEKLMEKN-DQQQMKNETEKLD 628

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            SS  +         + Q    +E+          DD+  EL+ L  E ++    +    
Sbjct: 629 ASSDEM---------KKQLDRTMEMLKRLQVNEKIDDLEKELDQLAAEQEKLEKDIKDEK 679

Query: 496 RLLGIIKQELLSVKDELDT 514
                  ++   +  + D 
Sbjct: 680 VSEKDASKKQEELNKKFDD 698


>gi|24216916|ref|NP_714397.1| siroheme synthase [Leptospira interrogans serovar Lai str. 56601]
 gi|45659187|ref|YP_003273.1| siroheme synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198303|gb|AAN51415.1|AE011575_1 siroheme synthase [Leptospira interrogans serovar Lai str. 56601]
 gi|45602433|gb|AAS71910.1| siroheme synthetase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 202

 Score = 38.8 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           D+   E   L +  KE   IL ++ R   ++K  L ++KD+ 
Sbjct: 151 DEHEEEFKELMLLRKELKSILPNQERRRKVLKDLLQTLKDDY 192


>gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 1166

 Score = 38.8 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 94/364 (25%), Gaps = 42/364 (11%)

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H   +VV          ++  +     ++G  F     +  +      Y      I  + 
Sbjct: 219 HTAHDVVKALQMKKTLKELYSEGKAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKC 278

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              I+            E P  +  A   EK+A    EKR+  I DL  E  ++    + 
Sbjct: 279 NLEIDTAETRGYLFPKFETPEGMTPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLD 338

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK----------PERFTLIGILKAFV 362
                 +               +    N + +   +            R T +  L+  +
Sbjct: 339 YEINVINQMGFAEYFLIVQDFINYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLRHGL 398

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            F   +   R           +   + +   +   ++V+  ++     ++  + +     
Sbjct: 399 LFERFLNPDR----------ISMPDIDVDFCMERREKVIDYVKQKYGEDSVAQIITFNFM 448

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +  +   +       Y                 I ++ L   T      I   L +   
Sbjct: 449 KSKMVIRDVARTLGFPYQE------------ADRIAKMILPGPTQGSTLTIDENLEAHPD 496

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
             K               I++ L   +    + R T I      +      + E + V  
Sbjct: 497 FKKLYET--------DENIRELLDLARKLEGSARHTGI--HAAGIVIAPGPLDEYVPVYR 546

Query: 543 SHLG 546
              G
Sbjct: 547 DKDG 550


>gi|225850848|ref|YP_002731082.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
 gi|225645479|gb|ACO03665.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
          Length = 898

 Score = 38.8 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 104/338 (30%), Gaps = 30/338 (8%)

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF----PTGAVILGRTGIKNAYATGRGSI 248
            ++ ++VD  V   + P       +E I   D+    P       +  I++ YA   G I
Sbjct: 401 RDIHKIVDTFVNFKEIPGYSRMVSLEEIEKNDYNLNIPRYIESTEKEDIQDIYAHLHGGI 460

Query: 249 VIRGVSHIEKTS-----GDREQIVVTEIPY--QVNKAAMLEKI--AELVREKRIVDIADL 299
             R +  IE  +      +R      E  Y   V+   + E I  AE V+E +   +A  
Sbjct: 461 PKRDIDKIEILNVFNDLKNRLFRKKEEGYYTLNVDIDNLTEIIENAEEVKEFKSHALAVF 520

Query: 300 RDESDRQGYRVVIELKRGASADVIL----NQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
              +D     ++  + +       +      L  +    +L     +          T+ 
Sbjct: 521 EKWTDENMP-ILTGIDKNTHPKEFIKTISESLLEFYKPLNLIDEYAIYQILMDYWDETIK 579

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +   +         R   ++ K +    +  G       L + + I  F    +    
Sbjct: 580 DDIYMIIEKGWVAEPYR---IIEKNKKGKEIDKGW--TCDILPKDIVINEFFKEEKEEIE 634

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L  +       ++ +          G D  ++  E ++  +  L   +      +   +
Sbjct: 635 SLEAQKDEIIRQREELK-----EENSGEDEALFEVEKKSDVLENLEDFKR-LAWEEYFED 688

Query: 476 ELNSLGIEIKECLDILSSRSRLLGII-KQELLSVKDEL 512
           E N L    KE   ++ ++  L   +       +  + 
Sbjct: 689 EYNQLLGLEKELEILMLNKLELAHSLGIFSKKELSQKY 726


>gi|32481440|gb|AAP84066.1| topoisomerase [Enterococcus casseliflavus]
 gi|32481446|gb|AAP84069.1| topoisomerase [Enterococcus gallinarum]
          Length = 29

 Score = 38.8 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQD 103
           A+  G +MG +HPHG+++IY+A+ RM+QD
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQD 29


>gi|319642171|ref|ZP_07996833.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_40A]
 gi|317386218|gb|EFV67135.1| DNA mismatch repair protein MutS [Bacteroides sp. 3_1_40A]
          Length = 681

 Score = 38.8 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T    LK F    E VV     Y  +  +    + +G   +   ++   +I         
Sbjct: 462 THYQNLKHFAEDHEGVVNGAMLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEEVIAD 521

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   +     NA   K L D++ D  Y       +   E Q                   
Sbjct: 522 ASEIVGSEYINAD--KYLQDIVRDKRYWETKRQNIRKREKQME------------ETIAK 567

Query: 473 IRNELNSLGIEIKECLDILSSRSRLL-----GIIKQELLSVKDELDTPRRT-----RIVE 522
              EL  L    KE L      +  L       I+  +  +K+      RT      + +
Sbjct: 568 YEEELQELEKSRKEILRKAKEDAEKLIQESNARIENTIRIIKEAQADKERTQSARQELTD 627

Query: 523 GLLDMEDEDCIVREDMVV 540
               +ED +   +ED ++
Sbjct: 628 FKNQIEDIEKKNKEDEII 645


>gi|194857672|ref|XP_001969006.1| GG24185 [Drosophila erecta]
 gi|190660873|gb|EDV58065.1| GG24185 [Drosophila erecta]
          Length = 425

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 13/169 (7%)

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +    A  E ++    K+  NKA D  H+   L   +  L   V +     + + A  
Sbjct: 216 DGVTLLDAQEERILSALKKHEFNKATDEYHIWYEL---MQELTGEVYLYNTQTHLDPAED 272

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                  +  D      L  + S  +  +GT++ S  Q   +L            + I  
Sbjct: 273 RTYGYGSDFIDF-----LNRNVSEALQINGTIFAS--QVMDVLASLHGDRLKSEINTIPR 325

Query: 476 ELNSLGIEIKEC---LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
            LN   ++I      LDIL   +  L +IK    + K E     RT IV
Sbjct: 326 LLNETSVKINIYSGQLDILVPTTATLAVIKDWAWNNKSEYLRANRTAIV 374


>gi|116283869|gb|AAH43398.1| CEP290 protein [Homo sapiens]
          Length = 805

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  +K   +                L     +
Sbjct: 492 KISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLD 551

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +       +A   L     N ++     D I +    +       +SE Q++ 
Sbjct: 552 LKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQSK- 608

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  +++    +L   +K+ L ++K+    P
Sbjct: 609 --NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDP 665


>gi|294873982|ref|XP_002766804.1| Growth-arrest-specific protein, putative [Perkinsus marinus ATCC
           50983]
 gi|239868027|gb|EEQ99521.1| Growth-arrest-specific protein, putative [Perkinsus marinus ATCC
           50983]
          Length = 804

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 21/270 (7%)

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + EKI      +          E +R        + +     +    L +    + +  
Sbjct: 34  QLQEKIESWEYRRNKAATERNYMEMERDLVNRFYTITKREIEQLEAAILCKERQTEVVEK 93

Query: 339 VNMVALNGYKPERFTLI--------GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
            + V +  ++ +  +L+         I K   A   E   R  K L     +   +   L
Sbjct: 94  EHRVKMKVHEHKVHSLVYHQTRENEDITKEAEALIMEEDDRHIKLLTQWHEENEALKESL 153

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
                  +E V+++        A+     +     +   L +   D    +G D  +   
Sbjct: 154 QSKKLAREEEVKLM----ERGFAKSLEKLKETYECNQAQLEEECRDEVENLGRDLEVR-- 207

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-ECLDILSSRSRLLGIIKQE--LLS 507
               R +    +     L  +++    N    +IK    DI     +L+  +K E  L+ 
Sbjct: 208 ----RRVEIHEMRERKNLHMNELTENHNEAFEQIKGYYQDITQDNVKLIQSMKDEIALMR 263

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            +++ +  R T+++     + +      E+
Sbjct: 264 DREKANKERMTQLIAENKTLSEPLAEKEEE 293


>gi|167539764|ref|XP_001741340.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165894041|gb|EDR22125.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 1888

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 18/273 (6%)

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           E I+E  +   +  I +    +    Y    E  +      +   +      +++  +  
Sbjct: 430 ENISEQKKIGLLDGIMNGNIVTTMNKYGFKSEEIKEYCMKFVYQFIVNQEIKEAIHLLMR 489

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           +     K     L       +  R+E+     + L+ + +        L          +
Sbjct: 490 LGYKDIKIIMKELYDNT-HLIIIRKEIEKVMKEILIEENKYINEYEEYLDRIKIENKYEI 548

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD----SSYTIGSDGTMYLSEVQTRAI 457
           +I       E    E  + +     I       D+          S   + LS      +
Sbjct: 549 KIKELKETQEELESEFTKETMKKYGISYEQGFTDNIAIIPRINNKSGKAIGLSIKNIEQL 608

Query: 458 LE----LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            E    + L        +DI  + N L  +IKE  +IL++          E   +     
Sbjct: 609 NEEEKNMILREEGKYEIEDIEIKFNLLHGKIKEIEEILNTGKEKNIKEINEKKEI----- 663

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
               T ++      +       E+M++   + G
Sbjct: 664 ----TPLIVKKSINKYMITHPNEEMIIKAENEG 692


>gi|299740842|ref|XP_001834037.2| hypothetical protein CC1G_13010 [Coprinopsis cinerea okayama7#130]
 gi|298404435|gb|EAU87775.2| hypothetical protein CC1G_13010 [Coprinopsis cinerea okayama7#130]
          Length = 491

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 90/321 (28%), Gaps = 53/321 (16%)

Query: 407 SPNPETARRELMQRSWNASDIKD------LIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           S     A     +R W    ++D      ++++  D +   G+               + 
Sbjct: 151 SKPATEAAGTTSKRDWYGETLEDRVPWGRVLEIAQDLTRQTGAHNAYGGFSSSEDRDYDR 210

Query: 461 RLARLTGLGRDDIRNELNSL--------GIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            L R         + E+              IKE    +  + R+     + L   K++ 
Sbjct: 211 NLYRNPPAASLQRQLEVEPTDRDFRSFAKAMIKEQQQFVLEQQRVNAKFVESLRETKEQF 270

Query: 513 DTPRR-----TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
               R     T  + G LD+   +      +  T    G  +       R   +G   + 
Sbjct: 271 MAESRKNAEATEALAGKLDIVISNPHNLNSVRETQYRDGASRMRSNQGSRDSGKGTSDQQ 330

Query: 568 GVVMRDEDFVT--------------------DLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
                  D                       ++++ S H  +  FS  G   KE+V  + 
Sbjct: 331 CFYCNGTDHWVMRCPSRLDDLRKKKIYTKGSEVYLSSNHQRISAFSPDGRSQKERVADMT 390

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK------ 661
           I     +GKA+    S + G          + E S    Y  F T    + + K      
Sbjct: 391 IQGAYLQGKAMAQSESSSHG--------GEDYERSRGPTYGDFNTMQTEISQIKDIVHTY 442

Query: 662 LSDFIQINRSGKIAMKLDSRD 682
           L D       G   ++    D
Sbjct: 443 LLDRKDSKSEGVPTIEERDDD 463


>gi|194766271|ref|XP_001965248.1| GF24142 [Drosophila ananassae]
 gi|190617858|gb|EDV33382.1| GF24142 [Drosophila ananassae]
          Length = 1192

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 12/156 (7%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN---PETARRELMQRSWNASDIKDLID 432
           L  K +D +  +      V N+  V+  +R   +    E A+ +   +  NA  ++   +
Sbjct: 475 LNEKIKDLSQKICDTRAGVTNVKTVIDGMRTQRDTSMSEMAQLKARIKEQNAKLLQLTQE 534

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                + +  S   +     Q   +      +   L    I++++ ++  EI+   + L+
Sbjct: 535 RAKWEAKSKASGAALSGENAQEEQLNAAFAHK--QLLIKQIQDKVENIKKEIESKKEDLT 592

Query: 493 SRSRLLGIIKQEL-------LSVKDELDTPRRTRIV 521
           S    +  +K EL         +  E D  R + + 
Sbjct: 593 SNDDQMAEVKNELSTLLTKCEELYKEYDVERTSVLE 628


>gi|119617819|gb|EAW97413.1| centrosomal protein 290kDa, isoform CRA_a [Homo sapiens]
          Length = 2141

 Score = 38.8 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 18/182 (9%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH-------------VLVGLAIA 393
              +       L+  V    + ++  T++  +K   +               V+  L   
Sbjct: 254 KISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEASVIESLEEE 313

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             +L + +R +       +A   L     N ++     D I +    +       +SE Q
Sbjct: 314 RLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQ 371

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
           ++      L+R       D+      +     +  +++    +L   +K+ L ++K+   
Sbjct: 372 SK---NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQK 428

Query: 514 TP 515
            P
Sbjct: 429 DP 430


>gi|119617820|gb|EAW97414.1| centrosomal protein 290kDa, isoform CRA_b [Homo sapiens]
          Length = 2484

 Score = 38.8 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 18/182 (9%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH-------------VLVGLAIA 393
              +       L+  V    + ++  T++  +K   +               V+  L   
Sbjct: 492 KISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEASVIESLEEE 551

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             +L + +R +       +A   L     N ++     D I +    +       +SE Q
Sbjct: 552 RLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQ 609

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
           ++      L+R       D+      +     +  +++    +L   +K+ L ++K+   
Sbjct: 610 SK---NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQK 666

Query: 514 TP 515
            P
Sbjct: 667 DP 668


>gi|145603386|ref|XP_369382.2| hypothetical protein MGG_06082 [Magnaporthe oryzae 70-15]
 gi|145011627|gb|EDJ96283.1| hypothetical protein MGG_06082 [Magnaporthe oryzae 70-15]
          Length = 484

 Score = 38.8 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 15/231 (6%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             +R + L+ +A +      G   A     + ++ +        A ++  +   N   ++
Sbjct: 63  TQKRRQELIAQANEIRQKQAGGKNARQTKQDQIKRLDEQLRSRIAEQKNARGKVNFKSVE 122

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQT-RAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           ++   I      I       + E +    +  LR  R      D+ + E++ L  +IKE 
Sbjct: 123 EVDREISRLEKQIEGGTMRIVDEKKALDEMSNLRKLRKNFAQFDNQQKEIDDLRNKIKEV 182

Query: 488 LDILSSRS-----RLLGIIKQELLSVKDELDTP-------R--RTRIVEGLLDMEDEDCI 533
            D + +            I+ E+  +K E D         R  RT++     +  +    
Sbjct: 183 KDSMDNPEQKALSEQYNKIQAEIDVIKAEQDEAYKGLSSLRDERTKLQNEQREKFEAIRK 242

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
           ++++           +       R +R+    +     + E     L   S
Sbjct: 243 IKDEYYAQKKAYSNFEWEAKQKARERRKAEDAKRAQEFKMERAKKMLAEAS 293


>gi|116327060|ref|YP_796780.1| siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116119804|gb|ABJ77847.1| Siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 202

 Score = 38.8 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           D+   E   L    KE   IL S      ++K+ L ++KD  
Sbjct: 151 DEHEEEFKELMQLRKELKSILPSPESRRKVLKKLLQNLKDGY 192


>gi|46447252|ref|YP_008617.1| hypothetical protein pc1618 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400893|emb|CAF24342.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25]
          Length = 926

 Score = 38.4 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 17/123 (13%)

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---------------DLIDDSSYTI 441
           +     + + S + +  + EL +       +  L+               +L+ +    I
Sbjct: 139 ILNDKTLSKKSQDYQEVKIELDKNKMKLDGLNKLLTNIKKRTYADKIKELELLKELDKPI 198

Query: 442 GSDGTMYLSEVQ-TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SSRSRLLG 499
            +     LS  Q      E+ + +LT    + ++ E + L     +   IL  +  RL  
Sbjct: 199 INIDNFLLSFEQFLEKYQEIDVEKLTTEDIEFLKKEHSELEKGYNDLKKILPGTIQRLNQ 258

Query: 500 IIK 502
            +K
Sbjct: 259 NVK 261


>gi|116332282|ref|YP_802000.1| siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116125971|gb|ABJ77242.1| Siroheme synthase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 202

 Score = 38.4 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           D+   E   L    KE   IL S      ++K+ L ++KD  
Sbjct: 151 DEHEEEFKELMQLRKELKSILPSPESRRKVLKKLLQNLKDGY 192


>gi|328789766|ref|XP_001121414.2| PREDICTED: centrosomal protein of 120 kDa-like [Apis mellifera]
          Length = 685

 Score = 38.4 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 50/422 (11%), Positives = 119/422 (28%), Gaps = 36/422 (8%)

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           Q      D        Y   + Q         +       +PN+D   +      + Y N
Sbjct: 176 QTISNEYDNVNKHIIDYNFIKDQPVNAICSHSVDTFLC--QPNFDNYSKSVEAYHSYYLN 233

Query: 174 VLVNGGGGIAVGMATNIPT-----HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
           +L+      A      +P      H+    V     +  +  +     ++ I        
Sbjct: 234 ILLEAIK--AKSSKLAVPNMEIRFHHPKTGVTSTFHLKLSFSLGEKVKLQDIGCKFQFIS 291

Query: 229 AV---------ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP---YQVN 276
           AV            +  I       +  I    ++  E    ++ +    +IP    + N
Sbjct: 292 AVDEIKQLLLSFPPKISIYKIEGNTKTCISQLKINAKELFCPNKPECQ-YDIPLYDMEHN 350

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI-----LNQLYRYT 331
               L+ I  L        I  +    +         L      ++        ++++  
Sbjct: 351 NIGNLDVILNLEDHGPYYRIKRVVPNENLGPPIFDDTLAYKIVDELETWKERQMEIFKVE 410

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE---VVVRRTKYLLNKARDRAHVLV 388
             +       +    ++  R  L   L   V   +     +   T+ L  +         
Sbjct: 411 LKRKEDRHLNLLSQEWQKHRENLETKLACSVEQCKMLANSLNNATEDLRTRRLKSLEKES 470

Query: 389 GLAIAVANLD--EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
            L  A  +L     +++     + +  + ELM +       K  ++ + +   +I ++  
Sbjct: 471 RLIKANEDLQWRYEMKLRELKESSQIVQEELMAKINILEKRKTALE-VQEEQLSIENERL 529

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L   Q+  +   +   LT     ++  EL +L     +  +   ++S       + + 
Sbjct: 530 QSLVAKQSEELENYQKGSLTQDQTANLLQELKTLEE---KLQNAQENKSFFKEQWAKAVR 586

Query: 507 SV 508
            +
Sbjct: 587 EI 588


>gi|149926484|ref|ZP_01914745.1| hypothetical protein LMED105_13833 [Limnobacter sp. MED105]
 gi|149824847|gb|EDM84061.1| hypothetical protein LMED105_13833 [Limnobacter sp. MED105]
          Length = 334

 Score = 38.4 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 6/151 (3%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +   LA         + I     + +T   E ++ +W  +    L +  +++        
Sbjct: 64  IQEFLAQQKEKGRIELEIPEMPESLKTTFTEALKETWRIASQISLAEAREENETHQKEME 123

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELN----SLGIEIKECLDILSSRSRLLGII 501
                  Q    +  +   L       I  E +     L  EI +    LS  S  L I 
Sbjct: 124 HFTQLIEQLE--VNNQALELQIGEIKQILAEKDLHVSKLQKEISDLETKLSLESNRLEIA 181

Query: 502 KQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
             +   +K +LD  RR  I E     ++ + 
Sbjct: 182 TDQCEELKSQLDKARRDFIAESHRMSQEHEQ 212


>gi|83766089|dbj|BAE56232.1| unnamed protein product [Aspergillus oryzae]
          Length = 1229

 Score = 38.4 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 7/174 (4%)

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD------RAHVLVGLAIAVANL 397
           LN  +         +   +      +  +  YL  +         +A +     + V+ L
Sbjct: 188 LNDGQNMTLKEQEKIIDKLDKDNFGLKLKIHYLQEQLEKAGPSYNQAALKENTELKVSKL 247

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
                I R+  + + A R+L        ++++ +        T   +  +   E++++  
Sbjct: 248 TMQRDISRYKKSLQQAERDLEAYRVQFQELREKLRR-GQLDETSQREMDLMREELESKDQ 306

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
               L       +D    E+  L  EI++    L  + R +    +EL  +KD+
Sbjct: 307 RVRELQEELRDAKDRQSEEIEKLRDEIEDLEASLREKERTIDERDEELEELKDK 360


>gi|47208995|emb|CAF91401.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2819

 Score = 38.4 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 94/265 (35%), Gaps = 31/265 (11%)

Query: 276  NKAAMLEKIA--ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL------ 327
            + A + E+I   + V++K   + ++LR E D     +   +K  A+ + +   L      
Sbjct: 1264 SVADLGEQIDNLQRVKQKLEKEKSELRLELDDVVSNMEQVVKSKANLEKMCRSLEDQMQE 1323

Query: 328  YRYTSLQSLFSVNMVAL--------NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            Y+  S +   ++N V +        NG    +      L + +   ++   ++ + L  +
Sbjct: 1324 YKTKSEEGQRTINDVTIQKAKLQTENGELSRQLEEKDSLVSQLTRGKQSYTQQMEDLKRQ 1383

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRF-SPNPETARRELMQR---------SWNASDIKD 429
              +       LA A+ +      ++R      + A+ EL +           W      D
Sbjct: 1384 LEEEIKAKNALAHALQSARHDCDLLREQYEEEQEAKAELQRGMSKANSEVAQWRTKYETD 1443

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD--IRNELNSLGIEIKEC 487
             I   ++            L E      +E   A+ + L +    ++NE+  L ++++  
Sbjct: 1444 AIQRTEELEEAKKKLAQ-RLQE--AEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERS 1500

Query: 488  LDILSSRSRLLGIIKQELLSVKDEL 512
                ++  +      + L   K + 
Sbjct: 1501 NAAAAALDKKQRNFDKILAEWKQKY 1525


>gi|317140517|ref|XP_001818234.2| spindle-pole body protein (Pcp1) [Aspergillus oryzae RIB40]
          Length = 1207

 Score = 38.4 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 60/174 (34%), Gaps = 7/174 (4%)

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD------RAHVLVGLAIAVANL 397
           LN  +         +   +      +  +  YL  +         +A +     + V+ L
Sbjct: 188 LNDGQNMTLKEQEKIIDKLDKDNFGLKLKIHYLQEQLEKAGPSYNQAALKENTELKVSKL 247

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
                I R+  + + A R+L        ++++ +        T   +  +   E++++  
Sbjct: 248 TMQRDISRYKKSLQQAERDLEAYRVQFQELREKLRR-GQLDETSQREMDLMREELESKDQ 306

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
               L       +D    E+  L  EI++    L  + R +    +EL  +KD+
Sbjct: 307 RVRELQEELRDAKDRQSEEIEKLRDEIEDLEASLREKERTIDERDEELEELKDK 360


>gi|197294333|ref|YP_001798874.1| hypothetical protein PAa_0204 [Candidatus Phytoplasma australiense]
 gi|171853660|emb|CAM11539.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense]
          Length = 1164

 Score = 38.4 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 91/307 (29%), Gaps = 28/307 (9%)

Query: 277  KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
              A  E+I +   +   ++++  +   +       I ++    +    N ++   + ++ 
Sbjct: 757  YQAYREEIDKNTIQGESIELSPGKYYCEPS-----INMRNIPYSTHGANLIFSEPTSETE 811

Query: 337  FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA----------RDRAHV 386
               N+  L+  K     +   L  +    +   +   + L N+               H+
Sbjct: 812  PPQNLFKLDEAKENLKNISQELSNYETNLKNAQLEYNQLLENQTPDDSLQQELNNKANHI 871

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
                        +           +   + L ++  N       I    D++ T      
Sbjct: 872  KTLKNEMQQLEIKEQSFRSEIDTLKLENKNLKEKYTND---LTKIQQELDATKTENEQLE 928

Query: 447  MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              + E+Q   I             +    ++  L  +I       ++ ++L  IIKQ+  
Sbjct: 929  KEMQEIQAELIKNGNADDALVKQLNHKEAQIKELKGKINTLE---ANETKLQTIIKQKDE 985

Query: 507  SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
             +K       R ++ E    +      +  +  + +     +K   L    A   G  G 
Sbjct: 986  EIKQL-----RQKVQEQAEQIIKLTTEIENN--IEIFKQQAMKIQQLEGAIAGLEGASGS 1038

Query: 567  SGVVMRD 573
             G   ++
Sbjct: 1039 LGSDNKE 1045


>gi|312621742|ref|YP_004023355.1| hypothetical protein Calkro_0642 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202209|gb|ADQ45536.1| Protein of unknown function DUF2326 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 590

 Score = 38.4 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 92/292 (31%), Gaps = 26/292 (8%)

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK-----IAELVREK 291
           IK  Y + +   ++     ++         ++ +IP+++N     +      I+  VR  
Sbjct: 108 IKPNYDSKKNEFIMNVKDWVKVLG-----YLMFDIPFEINNEKKYKLSFRSLISYFVRHG 162

Query: 292 RIVDIADLRDESDRQGYRVVIELKR--GASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           +   ++  +    ++ + + I      G + +            +++ S+  +A  G+  
Sbjct: 163 KGAYLSPFKHFEQQKEFDIQIHQAFLLGLNWEYARELQLLKDEKKNIDSLRRMAEEGFLV 222

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           E F   G L   +   E V +      LN       V     +     D++   I    +
Sbjct: 223 EYFGEKGSLDKGLLEAELVNLTSELEELNNQLRTFRVHPQYYVIQGECDKITSEIHSLRD 282

Query: 410 PETARRELMQRSWNASDIKDLIDL-----------IDDSSYTIGSDGTMYLSEVQTRAIL 458
                  L +R  ++ + +  + +           I    Y +     +     +  A  
Sbjct: 283 KRHLLISLKKRYEDSIEEEKDVSIDHIKNVYEECGILLKEYVVKKIEEVLEFHKKITANR 342

Query: 459 ELRLARLTG---LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
           +  L           + I  E+     +  E + IL +   L    K +  +
Sbjct: 343 KEYLYSEIERLDKEINKIEKEIEKKSEQRAELMKILETHGALEEFAKLQQRA 394


>gi|300676892|gb|ADK26764.1| coiled-coil domain containing 88A [Zonotrichia albicollis]
          Length = 1881

 Score = 38.4 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 7/153 (4%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           +L   ++   +   L      + +  + ++ S N     ++L++         + +    
Sbjct: 492 ILKMEKENQRLNKKLEELENEISQEKQSLQNSQNQS---KDLLKEKAQLEKTLEALRENS 548

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    +      +L+  QT A L  R          +I  E   L   IKE    L+   
Sbjct: 549 ERQIKLLEQENEHLN--QTVASLRQRSQISAEARMKEIEKENKILHESIKETSSKLNKME 606

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
                +++EL   K++    R   +   L  +E
Sbjct: 607 FEKKQVRKELEHYKEK--GERAEELENELHRLE 637


>gi|118376896|ref|XP_001021630.1| hypothetical protein TTHERM_00149950 [Tetrahymena thermophila]
 gi|89303396|gb|EAS01384.1| hypothetical protein TTHERM_00149950 [Tetrahymena thermophila
           SB210]
          Length = 672

 Score = 38.4 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 91/261 (34%), Gaps = 11/261 (4%)

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             + +Q+  T  P Q +   +L  + + V +    +    +++ D      + ++K    
Sbjct: 208 QNNNQQLDKTSAPNQFDNTKLLSSMVQSVTQDARHEALKQQEDGDEVRQFKMQKIKEEEK 267

Query: 320 ADVILNQLYR---YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
              I+++L +       +++ +      N  K ++      L       ++  ++  +  
Sbjct: 268 RQQIIDELEKENNKLKNKAIRAQYEAEENEEKIKQLENEKTLNQKDVKNKQKDIKLKENE 327

Query: 377 L-----NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           +      K++  + +     +      E+ R+        + R+++++        +++ 
Sbjct: 328 ILNLQTKKSKIESEITSSRLVIKDKESEIARLNEKHKLNASERQKVLKELELHIQKRNIA 387

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +L  +            L + Q  A               + +NE+  L  EI    + +
Sbjct: 388 NLDYEKIRQDKDRIMEELEKRQVDA---NDKYNELHQKYLNSQNEIQGLEREITVLQNFI 444

Query: 492 SSRSRLLGIIKQELLSVKDEL 512
               + +  ++ +   +KD+L
Sbjct: 445 EEEKKEIQKLQMQHKILKDKL 465


>gi|296207696|ref|XP_002750775.1| PREDICTED: WD repeat-containing protein 65 [Callithrix jacchus]
          Length = 1250

 Score = 38.4 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 15/255 (5%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT-SLQSLFSVNMVALNG 346
           V +K    I   R+    +   +V +      A V+L    R             +    
Sbjct: 667 VFDKDGRGIKREREVGFAEEV-LVTKTDMEEKAQVMLELKTRVEELKMENEYQLQLKDMN 725

Query: 347 YKPERFTLIG-ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           +  +   L    L+   + + +  V RT+        R H+   L      L ++     
Sbjct: 726 HSEKMKELTEKFLQEMESLKTKNQVLRTEKEKQDISHREHIEALLDKQSRELQDLESSNN 785

Query: 406 FS---PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ--------T 454
            +      +    +L  +       K L D  +  S  +      Y +++Q         
Sbjct: 786 QTLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTTLLEEA 845

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +  +  +L       +    +E   +     +    L         +K E   ++ +  +
Sbjct: 846 QEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEKKLRDEKESNLRLKGETGIMRKKFSS 905

Query: 515 PRRTRIVEGLLDMED 529
            ++  I E   D+E 
Sbjct: 906 LQK-EIEERTNDIET 919


>gi|194375730|dbj|BAG57209.1| unnamed protein product [Homo sapiens]
          Length = 576

 Score = 38.4 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 11/221 (4%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           + +    +   L +    +  +  L +        + ++   N            L    
Sbjct: 208 NSKLQRDLKEALAQREDMEERITTLEKRYLSAQREATSLHDANDKLENELASKESLYRQS 267

Query: 363 A-----FREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
                   E +   + K    L KA     +   LA  VA L++       F        
Sbjct: 268 EEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQLE 327

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +++      +    + DD +  +       LSE   R  L L+        ++ + 
Sbjct: 328 AQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLS 387

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 388 EEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 425


>gi|83816476|ref|YP_445980.1| exonuclease SbcC, putative [Salinibacter ruber DSM 13855]
 gi|294507891|ref|YP_003571949.1| exonuclease SbcC [Salinibacter ruber M8]
 gi|83757870|gb|ABC45983.1| exonuclease SbcC, putative [Salinibacter ruber DSM 13855]
 gi|294344219|emb|CBH24997.1| exonuclease SbcC [Salinibacter ruber M8]
          Length = 1019

 Score = 38.4 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 67/204 (32%), Gaps = 9/204 (4%)

Query: 340 NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
           N   L   + + FT     +        + + R + L ++ARD  H             E
Sbjct: 147 NSAFLLQGRSDEFTQKRPSQRKEILTRILNLGRYEALEDEARD--HWREAKERQQRAAAE 204

Query: 400 VVRIIRFSPN-PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           V R+     + P+        ++   +  + L DL D           +  +  +  +I 
Sbjct: 205 VERLEAALEDVPDWEAERAAVQADIKAQTEALSDLRDREKALTQKRANLEATAREAESIR 264

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----T 514
           E           ++ R+E+ +L   I+E   +L  R+ +     +    V +        
Sbjct: 265 ESM--ASLDDRIEEHRDEIEALTARIEEAEALLEDRTAIEEAYDEHQSLVAERDALEDTR 322

Query: 515 PRRTRIVEGLLDMEDEDCIVREDM 538
            R   + + L DM       R D+
Sbjct: 323 ERHRTLRQKLDDMSSSLQERRNDV 346


>gi|118388334|ref|XP_001027265.1| hypothetical protein TTHERM_00842490 [Tetrahymena thermophila]
 gi|89309035|gb|EAS07023.1| hypothetical protein TTHERM_00842490 [Tetrahymena thermophila SB210]
          Length = 1945

 Score = 38.4 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 83/249 (33%), Gaps = 17/249 (6%)

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            Q+N   + E +   ++EK I          + Q   V +E +     ++ ++Q+ +    
Sbjct: 1289 QINFIQINEDLEYRIKEKEI----------NEQNLLVQLEQQSLMIKNMEIDQIKKLEEY 1338

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
            + L     +  +            ++  +   E  V   +    N+   +          
Sbjct: 1339 KDLIQQIQLQNSQEISNLEREKQDMQLIINKLESFVQSDSAQNFNENEKKKRSSTKGDYD 1398

Query: 394  VANLDEVVRIIRFSPNPETARRELM------QRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
              +  + +            +  L       QR    +  K++IDL  +    I      
Sbjct: 1399 SQHYQQQINDKDKEIESLNEKIALQTQLIAKQRQAVETLKKEIIDLQKEHENRIKQLLQQ 1458

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
              + VQ +AIL  ++ +LT    + I    N +  +  + LDI   R  +    K E+  
Sbjct: 1459 SSNYVQEKAILHEQIRKLTIEKEEQIIASQNLIEDQQNQLLDIAKEREDIQKA-KDEISQ 1517

Query: 508  VKDELDTPR 516
             K  L+  R
Sbjct: 1518 FKRLLNDDR 1526


>gi|291388952|ref|XP_002711031.1| PREDICTED: akt substrate AS250-like [Oryctolagus cuniculus]
          Length = 1900

 Score = 38.4 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 92/338 (27%), Gaps = 19/338 (5%)

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY-PNVLVNGGGG 181
           +    +      L      +    G  T++   +   S  +  +      P +    G  
Sbjct: 143 NCAEEQVLLFACLVPGFPAVPSSRGPCTLETLISPGPSAADAKIYPEEITPLLPAVSGEK 202

Query: 182 IAVGMATNIP----THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           IA             + + +         +N D     L  + R    P   +    T +
Sbjct: 203 IAEDQTCFFLQILLKYMVIQAASLEWKNKENQDTGFKFLFTLFRKYYLPH--LFPSFTKL 260

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            N Y        +R       T+ D E I  T+IPY   +   ++ I     EK+ +   
Sbjct: 261 TNIYKPVLDIPHLRSKPAYITTTRDNENIYSTKIPYMAARVVFIKWIVTFFLEKKYLTTT 320

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
                      +++  +  GA  D            Q     N   L+  +    +L  +
Sbjct: 321 QNTKNGVDVLPKIIQTVGGGAVQDRAAEADGGGPPEQDRNHSNSSTLSDRRLSNCSLCSV 380

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            +      E V     + LL+       V      A       + + R        +   
Sbjct: 381 EEEHRLVYEMVQ----RILLSTRGYVNFVNEVFRQAFLLPSCEIAVTR--------KVVQ 428

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           + R W   D    ++  D           +  SE  ++
Sbjct: 429 VYRKWILQDKPVFMEEPDTKDAAQEDTEKLGFSETDSK 466


>gi|300676795|gb|ADK26671.1| coiled-coil domain containing 88A [Zonotrichia albicollis]
          Length = 1881

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 7/153 (4%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           +L   ++   +   L      + +  + ++ S N     ++L++         + +    
Sbjct: 492 ILKMEKENQRLNKKLEELENEISQEKQSLQNSQNQS---KDLLKEKAQLEKTLEALRENS 548

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    +      +L+  QT A L  R          +I  E   L   IKE    L+   
Sbjct: 549 ERQIKLLEQENEHLN--QTVASLRQRSQISAEARMKEIEKENKILHESIKETSSKLNKME 606

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
                +++EL   K++    R   +   L  +E
Sbjct: 607 FEKKQVRKELEHYKEK--GERAEELENELHRLE 637


>gi|297705447|ref|XP_002829588.1| PREDICTED: liprin-alpha-3-like [Pongo abelii]
          Length = 1128

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVRII-RFSPN 409
            L    +      E +   + K    L KA     +   LA  VA L++       F   
Sbjct: 364 DLKESEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEER 423

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                 +L +++      +    + DD +  +       LSE   R  L L+        
Sbjct: 424 LRQLEAQLEEKNQELQRARQREKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEE 483

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           ++ +  E+ ++     E    L ++ +LL  +++  + +      P
Sbjct: 484 KNSLSEEIANMKKLQDEL---LLNKEQLLAEMERMQMEIDQLRGRP 526


>gi|172035378|ref|YP_001801879.1| hypothetical protein cce_0462 [Cyanothece sp. ATCC 51142]
 gi|171696832|gb|ACB49813.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 486

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 80/208 (38%), Gaps = 11/208 (5%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG--LAIAVANLDEVVRIIRFSPNP 410
           TLI  L   +       +R   + L++ + +  +       + +   D    + +     
Sbjct: 54  TLIAALTFGILLAFSKSLREGLFELDEIQKQLRIARADLERLGIDKEDTEKELQKAKEEQ 113

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           ET  ++L   + N +  K  +  + + +  + +D    L+E +     ++ L +     +
Sbjct: 114 ETVEKKLQSTNDNFNQAKQQLKSVSNQATQLKADIQTLLTERKELRQNKIELDQEIQQLK 173

Query: 471 DDIRNELNSLGI---EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR----TRIVEG 523
            +I      L     +I +   IL+ R + L  ++++  +++ E+D  RR    T++ + 
Sbjct: 174 QEISQRDEELRKGKAQIAQQTRILNERQKRLQSLEEQQSTLQAEID--RRDDEITKLDQA 231

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + +         +        Y++R 
Sbjct: 232 INEKDMALKEREFQLQQLERESSYLQRQ 259


>gi|51571895|tpg|DAA05591.1| TPA_exp: centrosome protein Cep290 [Homo sapiens]
          Length = 2479

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  +K   +                L     +
Sbjct: 492 KISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIECLEEERLD 551

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +       +A   L     N ++     D I +    +       +SE Q++ 
Sbjct: 552 LKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISE--RKLDLLSLKNMSEAQSK- 608

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  +++    +L   +K+ L ++K+    P
Sbjct: 609 --NEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDP 665


>gi|114588178|ref|XP_516621.2| PREDICTED: downregulated in ovarian cancer 1 [Pan troglodytes]
          Length = 1352

 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 77/239 (32%), Gaps = 9/239 (3%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K     D I+ +L    S        + AL+    E       L+      +++  + +K
Sbjct: 301 KFHQDQDTIMAKLTNEDSQNRQLQQKLAALSRQIDELEETNRSLRKAEEELQDIKEKISK 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
                A   A V       +    +   +I+         + L + +  + D K  ++ +
Sbjct: 361 GEYGNAGIMAEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLERETLQSKDFKLEVEKL 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 +      +    Q    L+  L +   +    +  EL SL + IKE   I S  
Sbjct: 421 SKRIMALEKLEDAFNKSKQECYSLKCNLEKE-RMTTKQLSQELESLKVRIKELEAIESRL 479

Query: 495 SRLLGIIKQELLSVKD---ELDTPRRTRIV-----EGLLDMEDEDCIVREDMVVTVSHL 545
            +    +K++L  +K         R+T        E  L        V ++ V TV+  
Sbjct: 480 EKTEFTLKEDLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAASSQLQVEQNKVTTVTEK 538


>gi|326921296|ref|XP_003206897.1| PREDICTED: ninein-like [Meleagris gallopavo]
          Length = 2022

 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 9/148 (6%)

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             E      T+ L+NK  +    L G       L E V + R         R+ + +   
Sbjct: 752 HAESQFSADTQTLVNKYEETIQSLEG--RYQRELREFVELQREEKAQWEFERDEIAQEVA 809

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +  +    L ++ + ++       L E + +  +   +       ++ ++ EL  L   
Sbjct: 810 EAHEQLKERLANEKAASVALSQEKELLEKKFKEEVNALV-----CEKEQLQKELQELRDA 864

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDE 511
            +E    LSS    L         +KD+
Sbjct: 865 AEEQERKLSSEMLQLQN--DHEKELKDK 890


>gi|254304354|ref|ZP_04971712.1| possible DNA helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148324546|gb|EDK89796.1| possible DNA helicase [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 1038

 Score = 38.4 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 86/274 (31%), Gaps = 17/274 (6%)

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           P    K  +L++I      K+   IADL   +D +  +    +    +   I ++L +  
Sbjct: 291 PPGTGKTTLLKEIIADTIVKKAKIIADLNS-TDLENIKTNTTISYYCNYYKIPDELKKLG 349

Query: 332 SLQSLFSVNMV-ALNGYKPERFTL--IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            + S  + + V  ++   P+   +     L       E   +  TK   N   D      
Sbjct: 350 IIVSSNNNSAVENISKDLPKAEDVLSKDTLTNLFDINEHENIYFTKDSENIFGDNPRTWG 409

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARREL-MQRSWNASDIKDLIDLIDDSSYTI------ 441
            ++        + +I+   P  +            N  D K+ I +  +    +      
Sbjct: 410 LISAPYGRKANIQKILDILPEKKQKNEGFNFSFGENIPDFKEAISVFKEKYEKVLKYREN 469

Query: 442 --GSDGTMYLSEVQTRAILELRLARLT-GLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
              +    + ++ +   I              + +  EL  +    +    IL  +    
Sbjct: 470 FNSNVEKFFRNKDKIAEINNSSDQISNLKNKIEYLIEELKKIQDSKEYKDSILKQKREQK 529

Query: 499 GIIKQEL---LSVKDELDTPRRTRIVEGLLDMED 529
             I+        + ++L   +  +I+E   D+E 
Sbjct: 530 SNIENSYSFFTKIANKLAGEKNPKILELNKDIEI 563


>gi|197294482|ref|YP_001799023.1| hypothetical protein PAa_0416 [Candidatus Phytoplasma australiense]
 gi|171853809|emb|CAM11750.1| Conserved hypothetical protein [Candidatus Phytoplasma australiense]
          Length = 1164

 Score = 38.0 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 17/269 (6%)

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            I ++    +    N ++   + ++    N+  L+  K     +   L  +    +   + 
Sbjct: 787  INMRNIPYSTHGANLIFSEPTSETEPPQNLFKLDEAKENLKNISQELSNYETNLKNAQLE 846

Query: 372  RTKYLLNKARDRAHVLVGLAIAVANL-------DEVVRIIRFSPNPETARRELMQRSWNA 424
              + L N+  D +        A              ++   F    +T + E        
Sbjct: 847  YNQLLENQTPDDSLQQELNNKANHIKSLKNEMQQLEIKEQSFRSEIDTLKLENKNLKEKY 906

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            ++    I    D++ T        + E+Q   +             +    ++  L  +I
Sbjct: 907  TNDLTKIQQELDATKTENEQLEKEMQEIQAELVKNGNADATLVKQLNHKETQIKELKGKI 966

Query: 485  KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
                   ++ ++L  IIKQ+   +K       R ++ E    +      +  +  + +  
Sbjct: 967  NTLE---ANETKLQTIIKQKDEEIKQL-----RQKVQEQAEQIIILTAEIENN--IEIFK 1016

Query: 545  LGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
               +K   L    A   G  G  G   ++
Sbjct: 1017 QQAMKIQQLEGAIAGLEGANGAMGGNNKE 1045


>gi|145483993|ref|XP_001428019.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124395102|emb|CAK60621.1| unnamed protein product [Paramecium tetraurelia]
          Length = 979

 Score = 38.0 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 71/216 (32%), Gaps = 6/216 (2%)

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K I D+     + ++    + I+ +   +   +L +       +   +  +        +
Sbjct: 581 KDIEDLQFEHAKKEQDTMDLQIKYQNEHNKMKLLLEELDTCHSKLKNTEQLCREADRVLK 640

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +       K     + E +++       K +   +  + +      L   +         
Sbjct: 641 QLNGAVADKEQEMQKYEKIMQEANIEKEKIKQTKNENLQIKKESQKLRTELD--NLEYQM 698

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +  +  L++   N   +  L   I+     +  +  +  +E Q +   +++   + G   
Sbjct: 699 QVGQDNLLKGKKNLQQVTQLT--IEKEQELLQIEKQLINTEKQIQD--QMKQKDMLGNDF 754

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
           D ++ E+  L IE  +    +   +  L  IKQE  
Sbjct: 755 DILQKEMKKLNIEKAKLQQQVDDATIDLQSIKQEFQ 790


>gi|237710115|ref|ZP_04540596.1| DNA mismatch repair protein MutS [Bacteroides sp. 9_1_42FAA]
 gi|229455577|gb|EEO61298.1| DNA mismatch repair protein MutS [Bacteroides sp. 9_1_42FAA]
          Length = 836

 Score = 38.0 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 24/198 (12%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T    LK F    E VV     Y  +  +    + +G   +   ++   +I         
Sbjct: 464 THYQNLKHFAEDHEGVVNGAMLYDRHLMQALFQLQIGNPGSSFAVEIARKIGLPEEVIVD 523

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   +     NA   K L D++ D  Y       +   E Q                   
Sbjct: 524 ASEIVGSEYINAD--KYLQDIVRDKRYWETKRQNIRKREKQME------------ETIAK 569

Query: 473 IRNELNSLGIEIKE-CLDILSSRSRLLG----IIKQELLSVKDELDTPRRT-----RIVE 522
              EL  L    KE          +LL      I+  +  +K+      RT      + +
Sbjct: 570 YEEELQELEKSRKEILRKAKEDAEKLLQESNARIENTIRIIKEAQADKERTQSARQELTD 629

Query: 523 GLLDMEDEDCIVREDMVV 540
               +ED +   +ED ++
Sbjct: 630 FKNQIEDIEKKNKEDEII 647


>gi|145551873|ref|XP_001461613.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429448|emb|CAK94240.1| unnamed protein product [Paramecium tetraurelia]
          Length = 374

 Score = 38.0 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 89/293 (30%), Gaps = 16/293 (5%)

Query: 275 VNKAAMLEKIAELVREK-RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            + + +  +I ++ R K +I    D    S     +++         + +   L +  + 
Sbjct: 84  TDLSNLNNEIDDINRLKVKIQGAIDQLKASIESKKKIL------DEKNALRKNLRKGMNE 137

Query: 334 QSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
             +     V +    + E   +I  L+            RT +L  +           A 
Sbjct: 138 VDVIREYQVKVYEDKRGEVGKIIKTLEEVKLVY--AQKLRTNFLELQTEKTTVKPEVFAE 195

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
               L    ++       +     ++Q S N ++I  L ++ID S   I     ++  E 
Sbjct: 196 VTKQLVSFGKLKSLGKPFQDIIDFMIQMSQNGNNIGVLRNIIDLSESLIRQIDEIWQVER 255

Query: 453 QTRA---ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +             +           E+N L   I+   D L+   R +  +   L S K
Sbjct: 256 KAEEERVRWYTEYQKFNNTDFKIYDKEINELEALIQSLKDRLADNQRKIDDLTLRLES-K 314

Query: 510 DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY--VKRVPLSVYRAQR 560
           +     RR    +   D          D  +    +G   V    L    AQ+
Sbjct: 315 EYTKEDRRNECQQAAYDYTQRRMSRAVDRNIVSEVVGLLNVNMRDLKETLAQK 367


>gi|83273857|ref|XP_729582.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487793|gb|EAA21147.1| protein mix-1, putative [Plasmodium yoelii yoelii]
          Length = 1227

 Score = 38.0 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 84/254 (33%), Gaps = 18/254 (7%)

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYT 331
           YQ  K   L K  E+ +    +   +  +E  R+    + I     ++ +  +    +Y 
Sbjct: 707 YQNIKKNYLSKEEEIKKINSKLIAFEKGEEEKRKINKDIQIISNNLSNIENRIETS-KYG 765

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            L          +   + E  TL    K       ++    T Y  NK +        L 
Sbjct: 766 CLSKKIDNAKDEIEKGREELKTLYDDQKRLNEIIRKLEKDITDYENNKDKKE----EDLK 821

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM---Y 448
            +V  L   ++ +    N +  + ++        + K  ++   +      +  T     
Sbjct: 822 DSVKKLKNKIKQLETEENKK--KEQVDDLLMQIENFKKQVEKERNDLIIADATITDIENK 879

Query: 449 LSEVQTRAILELRLARLTGLGRDDIR-------NELNSLGIEIKECLDILSSRSRLLGII 501
           + ++Q    +E    +        ++       NE+  +  +I++     ++ +  L  +
Sbjct: 880 IVDIQKNIDIENENLKELENRIVQLQISFGSYENEIKQVIKKIEDLEKKKTNYTLDLKKL 939

Query: 502 KQELLSVKDELDTP 515
             +L+ +K +  + 
Sbjct: 940 DNKLIDIKKDFKSA 953


>gi|255073489|ref|XP_002500419.1| predicted protein [Micromonas sp. RCC299]
 gi|226515682|gb|ACO61677.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score = 38.0 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 78/297 (26%), Gaps = 25/297 (8%)

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
             FP+ +  + R  +   Y    G     G   +E          V E+ Y         
Sbjct: 102 WTFPSYSAYVDRAEMVKQYCLVHGGDNSTGCVKVEIVHESVCDPAVPEL-YGHLTTDNCT 160

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            +     E+R V      + +  +    V            +   Y         +   V
Sbjct: 161 DLCVYSDEERTVG-----NTTAAERLAFV----DSFIPGAEVPCFYPPGDSNFTQATFTV 211

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
             N  +    +L+     +++     ++      L K R+   +     +     + V++
Sbjct: 212 PYNPNEQMFLSLV-----WLSPLFFCLLVSVHCALRKPREALELEDDQMLTGLFNEVVIQ 266

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
                        E+  +   ++   +    +D              SE   +  L   +
Sbjct: 267 RNHQEKFVNDV--EMRVKHLKSAVDGEQQKRLDVVLEVEKERRDRLTSEDNLKHALHENM 324

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
             L       +  E+      I     I S     +     +    +D L   RR++
Sbjct: 325 RSL----ESKLVREMAQRLASI----PIPSKLKEKMMRKADKYREDRDPLLGGRRSK 373


>gi|260064069|ref|NP_081065.2| WD repeat-containing protein 65 [Mus musculus]
 gi|300669700|sp|Q9D180|WDR65_MOUSE RecName: Full=WD repeat-containing protein 65
 gi|123211835|emb|CAM16898.1| WD repeat domain 65 [Mus musculus]
 gi|123231542|emb|CAM27667.1| WD repeat domain 65 [Mus musculus]
 gi|123294421|emb|CAM15602.1| WD repeat domain 65 [Mus musculus]
          Length = 1249

 Score = 38.0 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 71/265 (26%), Gaps = 27/265 (10%)

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRY-TSLQSLFSVNMVALNGYKPERFTLIG 356
             R E  +      + LK     + I     ++   ++SL + N V     + +  +   
Sbjct: 704 KTRVEELKMENEYQLRLKDMNYTEKIKELTDKFIQEMESLKTKNQVLKTEKEKQDISHRE 763

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV--VRIIRFSPNPETAR 414
            L+  V  +   +         K          L +    + E    ++         A 
Sbjct: 764 RLEELVDKQTRELQDLECCNNQKLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQAL 823

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL +  + A   +    L +              ++ Q     +  +  +       +R
Sbjct: 824 EELTE-FYEAKLQEKTGLLEEAQEDVRQQLREFEETKKQIEEDEDREIQDIKTKYERKLR 882

Query: 475 NE---------------------LNSLGIEIKECLDILSSRSRLLGIIKQELLSVK--DE 511
           +E                        +     +   + S + +L GII+     ++    
Sbjct: 883 DEKESNLRLKGETGIMRKKFSSLQKEIEERTNDIELLKSEQMKLQGIIRSLEKDIQGLKR 942

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVRE 536
               R   I +    + D     +E
Sbjct: 943 EIQERDETIQDKEKRIYDLKKKNQE 967


>gi|255076261|ref|XP_002501805.1| predicted protein [Micromonas sp. RCC299]
 gi|226517069|gb|ACO63063.1| predicted protein [Micromonas sp. RCC299]
          Length = 748

 Score = 38.0 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 50/127 (39%)

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S + + A  + + R+ +A + +D + L  D++     +    ++E++T+ I      +  
Sbjct: 397 STSEKQALSQALSRAESAEEERDQMKLRADATDEKSKEQKERINELETQVIQAQTAQKAA 456

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
              + +++   + L     +  + L++  +      Q L   K E    ++ R+      
Sbjct: 457 ETKQAELQASNDELAEAKTKLEEELATARQEKADAIQALEDYKKEFLVEQKARLKAEKNM 516

Query: 527 MEDEDCI 533
            E  D  
Sbjct: 517 REMRDEN 523


>gi|256751126|ref|ZP_05492008.1| SMC domain-containing protein [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256750032|gb|EEU63054.1| SMC domain-containing protein [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 456

 Score = 38.0 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/189 (8%), Positives = 54/189 (28%), Gaps = 10/189 (5%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            K +   L    + F +  E   +      +   +++   +  +            + + 
Sbjct: 90  GKEKSKNLRERQQEFDSLSEGRDIEEYLKEIQYNKEKITKMESVLKET--------LEKA 141

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
             + +    + +    +   + ++     +       +      +     +L+    +  
Sbjct: 142 RKDKQNIESKKISACKSRDLLNNMFREQSEKLENALLEKGFKDKKEALEYLLDSENIKKI 201

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK--DELDTPRRTRIVEGL 524
                +  NE  S+   I   ++IL  +        Q   S+K  +++   +R  I    
Sbjct: 202 EEEIKNFENEYVSVNKSIDRLMEILKGQKINEEEWNQLEESIKGLEQVLNEKRKEIGATE 261

Query: 525 LDMEDEDCI 533
             + D    
Sbjct: 262 KAISDMQEN 270


>gi|212543263|ref|XP_002151786.1| spindle-pole body protein (Pcp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210066693|gb|EEA20786.1| spindle-pole body protein (Pcp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 1242

 Score = 38.0 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 19/188 (10%)

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
            R     +     L +     S+    ++   D +    ++    L + +  A    R  
Sbjct: 352 ERIIDAKDEEIEILKEDDGQDSNAVAELEAELDRARQQLAEFQDDLEKAKADAREANRNR 411

Query: 464 RLTGLGRDDIRNELNSLGIEIK-----------ECLDILSSRSRLLGIIKQELLSVKDEL 512
                 ++     L  L  E+            +  +      + L  ++ E   +K + 
Sbjct: 412 EQAIEQKEKAEENLKELQDEMANKSFSTKGLSRQLEERAEDLEKELNQLRDEYNDLKQDY 471

Query: 513 -DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RR  ++EG L+   ++     D +         K      Y A+R    GR   V+
Sbjct: 472 AAKERREEMLEGQLEEVQQERAAELDSLRD-------KADSAEQYLAERDEALGRLKEVL 524

Query: 572 RDEDFVTD 579
            D D  TD
Sbjct: 525 DDLDRKTD 532


>gi|313241844|emb|CBY34054.1| unnamed protein product [Oikopleura dioica]
          Length = 1380

 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 17/251 (6%)

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            + +  EI   +N    L K        +   I DL DE D +   ++  L+        
Sbjct: 433 WKAMSREICGAINLDDKLHKFGHTKLFFKAGVIGDLEDERDEKIAAILTSLQSYMR---- 488

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
               YR           M+            I   +    +    ++ + K L+++A + 
Sbjct: 489 ----YRLAERTYAE---MIKRRDSIEVIQGNIRAFQFLKDWEWMKIIFKIKPLISQAEEV 541

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
              L       A L+E       S N E  R EL Q++   +++ D  +   +       
Sbjct: 542 KKQLEKEKKRRAELEEQ------SVNLEQERNELTQKAEAQNELLDDAEGRCEELIGNKI 595

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +    + E+Q +   E  +       +  + +E + L  +I +    L+   +     + 
Sbjct: 596 ELDSKIRELQEKLEDEEEMNNELVAKKRKLEDESSELKKDIDDLELTLAKIEKEKHATEN 655

Query: 504 ELLSVKDELDT 514
           +  +V +EL T
Sbjct: 656 KSKNVTEELAT 666


>gi|209876051|ref|XP_002139468.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209555074|gb|EEA05119.1| hypothetical protein CMU_041920 [Cryptosporidium muris RN66]
          Length = 330

 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 78/291 (26%), Gaps = 19/291 (6%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           V   ++VDI+ L  E       +   L +  S    L    +    +   + N + +   
Sbjct: 22  VSSYKVVDISSLDIEKVASSLPIPTALSKLISISKQLQHEIKNIKNERDEAYNALIIQRD 81

Query: 348 KPERFTLIGILK--------AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
             E      + K        + +    ++   R +Y         +      I    +  
Sbjct: 82  YYEHSGKKDLSKLKIIANTISNIEHNAKINNLRKEYEKQMDEMELNFQNEKKILRNKVLH 141

Query: 400 VVRIIRFS---------PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            V                  +  + ++      A  + +   L  +         ++   
Sbjct: 142 DVEDYLIKYRDLAVLATEELKRQKEKMEAMKIRAKQLAETTCLAFEEKLKRQMKESIRKY 201

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E   +A     L +   +       E      + +    IL    + +   ++  +  + 
Sbjct: 202 EEMAQATCSRVLEKEKNMHIQWNEREKCLEREKREFEKSILKESEKRIEEFRRGYIETQV 261

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
           +L   R   I + ++D   E      D   +     +     +     QRR
Sbjct: 262 QLAKER--EIFDDIIDKLKEKIARECDDFESEIQHRFAVAFNMDEDEVQRR 310


>gi|307169069|gb|EFN61913.1| Centrosomal protein of 290 kDa [Camponotus floridanus]
          Length = 2086

 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 84/280 (30%), Gaps = 20/280 (7%)

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++I+DI D   +   Q       ++         N ++       +      AL    
Sbjct: 470 KSEKILDIPDNLGDFSNQFLHSTKLMEPENMQVSSSNDIFEVNQNIQIIIEENEALRKGM 529

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
            E    I           +         L +A D  H+  G       L E + +++ S 
Sbjct: 530 HEIMDSIRNQDGKSEVEIQSSTLE---RLLEALDVRHLA-GWYHPAMRLQEHLNVVQGSN 585

Query: 409 NPETARRELMQRSWNASD--------IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
               ++  L+++     D        IK++        ++       YL+E++       
Sbjct: 586 TELRSQLRLLRKELQKKDNILQDLATIKNIDLESLFERHSEDEAIMTYLAEMKALQTAYK 645

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
             A      +D +  E N L  EI      L    +   II+     ++ E     R   
Sbjct: 646 NEAEEWEKQKDLLIQESNELKDEIDGLKKQLEVYKKNWQIIENGDDEIRKEFAIKTR-EY 704

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
            +   ++   +          +S    + +    +Y  Q+
Sbjct: 705 ADAANEIIIMNRK-------NISLRQLLNKETSRLYEYQK 737


>gi|281371331|ref|NP_001094297.1| centromere protein F [Rattus norvegicus]
          Length = 2985

 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD-LIDLIDDSSYTIGS 443
            H+          L+++      +   +     L Q    +   K+ LI   ++S   I +
Sbjct: 2294 HIDADKKKQCHILEQLKESKHHADLFKDRVENLEQELMLSEKNKEHLIFQAENSKAEIQT 2353

Query: 444  DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
              T   +  Q    LEL L   T   ++++  EL +   +I +   I SS  RLL   +Q
Sbjct: 2354 LKTEIQTMDQNLQDLELELTN-TRSEKENLMKELKNEQEQISKLETINSSIERLLTDKEQ 2412

Query: 504  ELLSVKDE 511
            E + VK+E
Sbjct: 2413 EKVQVKEE 2420


>gi|109032700|ref|XP_001090550.1| PREDICTED: filamin A interacting protein 1-like isoform 1 [Macaca
           mulatta]
          Length = 1135

 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 9/170 (5%)

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           A V       +    +   +I+         + L + +  + D K  ++ +      +  
Sbjct: 370 AEVEELRKRVLDMEGKDEELIKMEEQCRDLNKRLEKETLQSKDFKLEVEKLSKRIMALEK 429

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
               +    Q    L+  L +   +    +  EL SL   IKE   I S   +    +K+
Sbjct: 430 LEDAFNKSKQECYSLKCNLEKE-RMTTKQLSQELESLKGRIKELEAIESRLEKTEFTLKE 488

Query: 504 ELLSVKD---ELDTPRRTRIV-----EGLLDMEDEDCIVREDMVVTVSHL 545
           +L  +K         R+T        E  L        V ++ V TV+  
Sbjct: 489 DLTKLKTLTVMFVDERKTMSEKLKKTEDKLQAAASQLQVEQNKVTTVTEK 538


>gi|118385159|ref|XP_001025717.1| hypothetical protein TTHERM_00929540 [Tetrahymena thermophila]
 gi|89307484|gb|EAS05472.1| hypothetical protein TTHERM_00929540 [Tetrahymena thermophila SB210]
          Length = 1316

 Score = 38.0 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 72/235 (30%), Gaps = 28/235 (11%)

Query: 286  ELVREKR--IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
            E ++EK+  I    D   +  ++ +   I+    +    +++++ ++ S++ +  +    
Sbjct: 824  EQLQEKKRDIEKKYDEELKIMKEKFEAEIQELDTSYQRKVMDEVEKHESVKKVHEIQRNK 883

Query: 344  LNGYKPERFTLIGILKAFVA-------FREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
             N  + ++     +    +          E     R +  ++K +               
Sbjct: 884  NNRERQQKAMQCQMQAQSLDQEYQQKLHEERSQRERVQNDIDKMQKDN--DEIYRQIEQE 941

Query: 397  LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
              E +  +        A  +   +   +        +      +   +    L + Q + 
Sbjct: 942  TKEEIENLNNKNLEHEAEVKERHKKAKSDAAITTKKIDQKKKDSEQYEEQFRLHQKQLK- 1000

Query: 457  ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR-LLGIIKQELLSVKD 510
                            +R E  +L  EI++  +I+  R + +    KQ     K 
Sbjct: 1001 ---------------KLREENETLLKEIQQQKEIIQERDKTIGKQEKQIYKQKKK 1040


>gi|66531869|ref|XP_396284.2| PREDICTED: structural maintenance of chromosomes protein 2 [Apis
           mellifera]
          Length = 1177

 Score = 38.0 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 86/253 (33%), Gaps = 3/253 (1%)

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            +  +  +T I  Q+     +E IA+ +     +    +  E D      ++        
Sbjct: 613 PEETRSAMTWIFGQIFICKDIE-IAKKIAFHDNIMKKCVTLEGDVVDPAGILSGGAPLKT 671

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             +L +L     +Q+  +     L   +     +  I + + + ++   +R   Y ++  
Sbjct: 672 GSVLLKLDELKDIQNKLNTKQKTLQNIETTLMNVNNIAEKYTSLKQTFDLR--NYEISMV 729

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + +        I          I +         +   + + +A +++  +    +    
Sbjct: 730 KQKLEQTEYYKIKEEIDSLEKNIEQLLETITVVEKNEKESTIHAQELEHQLKDATNIREK 789

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              +    L  ++T+A    +  +      D +  E+  L   I+   + L +    L I
Sbjct: 790 QLKNAKSELERLKTKAENSRKEWQKREQEADMLELEIKELQKSIEVGKEQLITSEEKLNI 849

Query: 501 IKQELLSVKDELD 513
           ++++   ++ EL+
Sbjct: 850 LQEKANKLEQELN 862


>gi|254455710|ref|ZP_05069139.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082712|gb|EDZ60138.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 390

 Score = 38.0 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            +  T +     +      + L        E + I +     +  + +L +++       
Sbjct: 95  KIASTIFQYKILKKDEERRLKLEKQERERQEKIEIAKERQKEQELKVKLKEQALKDEVKL 154

Query: 429 DLIDLIDDSSYTIGSDGTMYLS--EVQTRAILELRLARLTGLGRDDIRNELNSLGI-EIK 485
           +     D   +       + +   E Q + + +LRL +     R     EL  L    +K
Sbjct: 155 EKQRAKDIKLFLRKEQAILRIEQAEKQKQFLKQLRLEKQIDKFRVREVKELEKLEKISLK 214

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           E  D  +   + +  +K++   ++D+    R
Sbjct: 215 EKRDDYAGLQKRIEQLKEKYRIIRDQKIRER 245


>gi|300897066|ref|ZP_07115533.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300359130|gb|EFJ75000.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 514

 Score = 38.0 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 100/308 (32%), Gaps = 32/308 (10%)

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           +K  Y    G  +   + H        +     E+P  V+ +++LE+I   + E +I   
Sbjct: 1   MKKIYELTTGRALKYFLQH--------DSYTTLELPSYVDFSSLLEEINSAIDEGKINFQ 52

Query: 297 ADLRDESDRQGYRVVIE----LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
            D +    +     V+     L       +I    Y Y       S N  A+     E  
Sbjct: 53  PDSKSLMGKNINYEVLVSKDGLYSWRRITLINPLYYVYFCKLITSSSNWNAIRNKFREFE 112

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP---- 408
           +    L + +   ++        +LN   D     + LA+    +     I  F P    
Sbjct: 113 SNDLFLCSSIPVSKKNTSNVAASVLNWWEDFEQKSLSLALEYEFM-FSTDISNFYPSIYT 171

Query: 409 --------NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
                   + E A+++  + + N   + D    +  S+ T G      L +     IL  
Sbjct: 172 HSFEWVFISKEEAKKK--ENNNNPGRLIDTHIQMMMSNQTNGIPLGSTLMDTFAELILGE 229

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RR 517
              +L     +    +   +     +   I SS    L  I + L+ V  E       R+
Sbjct: 230 IDLQLRKKTEEQKITDYK-VVRYRDDYR-IFSSSKDDLDKISKCLVEVLGEFGLDLNSRK 287

Query: 518 TRIVEGLL 525
           T + + ++
Sbjct: 288 TELHDDII 295


>gi|284929438|ref|YP_003421960.1| hypothetical protein UCYN_08950 [cyanobacterium UCYN-A]
 gi|284809882|gb|ADB95579.1| uncharacterized conserved protein with myosin-like domain
           [cyanobacterium UCYN-A]
          Length = 487

 Score = 38.0 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 8/182 (4%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG----LAIAVANLDEVVRIIRFSP 408
           TLI      +       +R   + L+K + +  +       L I   N ++ +R ++   
Sbjct: 54  TLIAASTFSILLISSKSLREGLFRLDKIQKQLRIAEADLERLGIDKKNTEKELRKVKSEQ 113

Query: 409 NPETARRELMQRSWNAS--DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
                + E+   ++N +   +K   D        I +         Q++  L+ ++ +L 
Sbjct: 114 YAVEKKLEITINNFNTAKQQLKSAFDQALKLRSDIQTLLNERKELRQSKINLDKQIKKL- 172

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
               ++   EL     +I E   IL+ R   L  +++    +K+E+   R   I++   D
Sbjct: 173 KQEINNRDQELGKGKKQIIEQTKILNERQNRLQSLEKRQSILKEEI-DRRDAEIIQLDQD 231

Query: 527 ME 528
           + 
Sbjct: 232 IN 233


>gi|153872652|ref|ZP_02001482.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152070884|gb|EDN68520.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 535

 Score = 38.0 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 84/308 (27%), Gaps = 31/308 (10%)

Query: 51  PVHRRILFGM-MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           PV    L  +  Q            +R+ G    +     +  I     +  +D   + +
Sbjct: 218 PVQDYRLHVLAWQHHFASIFGLEAMSRVRGFSPSEMALPNHPDIAYEFVKTLKDCGYQWV 277

Query: 110 LIE---------GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV-DFRPNYDG 159
           LI+         G G                       A           V   +P Y+ 
Sbjct: 278 LIQEHSVEHSENGHGLERPHIPHRLVCTNSYGETASIIAIIKTQGSDTKLVAQMQPYYEA 337

Query: 160 SFQEPVVLCAR-YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
                  L  +  P ++     G   G+  N   H   EV +      D P ++    +E
Sbjct: 338 QSLSRWELAGQQIPPLVTQIADGENGGVMMNEFPHKFFEVSNDSTG-SDTPMMNATEYLE 396

Query: 219 I-----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                 I+  DFP    I+ +  I      G G   +  V  I +   +  Q  V     
Sbjct: 397 HLFANGIKETDFPAIQPIMQKR-IWERVKPGDGPEKMEKV--IAELKKEDHQFHVD---- 449

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
             +    +  +         ++ A        Q +   I+ +  ++     N LY   S 
Sbjct: 450 GGSWTNSISWVEGYDNVLGPMEKA------SSQFFEKAIKAQIPSNEHRYRNALYHLMSS 503

Query: 334 QSLFSVNM 341
           Q+      
Sbjct: 504 QTSCYRYW 511


>gi|150020487|ref|YP_001305841.1| preprotein translocase subunit SecA [Thermosipho melanesiensis
           BI429]
 gi|172048664|sp|A6LKK5|SECA_THEM4 RecName: Full=Protein translocase subunit secA
 gi|149793008|gb|ABR30456.1| preprotein translocase, SecA subunit [Thermosipho melanesiensis
           BI429]
          Length = 853

 Score = 38.0 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 90/293 (30%), Gaps = 26/293 (8%)

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
              +G  V+ G + IEK+    + +    IP+ V  A   EK AE+V          +  
Sbjct: 465 RHEKGQPVLVGTTSIEKSERLSQMLKKENIPHNVLNAKYHEKEAEIVARAGQRGAVTIAT 524

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
               +G  + +         +++    R+ S           L G    +      +   
Sbjct: 525 NMAGRGTDIKLGPGVKELGGLLIIGTERHESR-----RIDNQLRGRAGRQGDPGESIFFL 579

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               + + +   +  L K  +   +  G  I    L +++  ++        ++      
Sbjct: 580 SLEDDIIRIFGGE-KLEKIMNLVKIEKGEPIYHPMLTKLIERVQ--------KKVESINF 630

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
               ++  +  ++D     I S     LS       L+           + I  E     
Sbjct: 631 AIRKNLLQMDTVLDAQRKAIYSYREYLLSGN-----LDEHFYDAMEDFIERILEEFCEKE 685

Query: 482 ----IEIKECLDILSSRSRL---LGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
                +I E L IL+   +L       K+ L  +  +    ++  + E    +
Sbjct: 686 VCDTQKINESLKILNIDEKLPDTREETKKYLKDIILKRYNKKKEELGEDFSKI 738


>gi|170594575|ref|XP_001902039.1| Viral A-type inclusion protein repeat containing protein [Brugia
           malayi]
 gi|158590983|gb|EDP29598.1| Viral A-type inclusion protein repeat containing protein [Brugia
           malayi]
          Length = 1051

 Score = 38.0 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 19/183 (10%)

Query: 336 LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA--RDRAHVLVGLAIA 393
             S   + +   +    +L+  L        +  ++  +Y L++    + A +     + 
Sbjct: 696 NMSQKELLIKELEQNIRSLMAGL-ECERHNHDKSIKDLQYELSQLQQENTAILTAKERVI 754

Query: 394 VANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              L  ++ I               + EL  +    SDI   ++ + +            
Sbjct: 755 FLFLVILIAIFHKELVIQMETVSELKEELHAKERQLSDIMQEMERVRNELR--------- 805

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            S+ + R  LE    +L     + +R EL+ L     +  +     + LL    +     
Sbjct: 806 -SKEEGRYTLENDALKLKRQNVE-LRKELDQLEKSTSQLKNDFEKETNLLKNSLENCEKN 863

Query: 509 KDE 511
           K+E
Sbjct: 864 KEE 866


>gi|118781858|ref|XP_311902.3| AGAP002985-PA [Anopheles gambiae str. PEST]
 gi|27227582|emb|CAD59408.1| SMC6 protein [Anopheles gambiae]
 gi|116129292|gb|EAA07909.3| AGAP002985-PA [Anopheles gambiae str. PEST]
          Length = 1133

 Score = 38.0 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 24/172 (13%)

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTG 467
            + AR  L+ +  +   + + I ++++    + S G M   LSE+Q +      + +   
Sbjct: 268 AKKARDVLVVKEKSLEYLSNEIVVLEEKQSNLESAGRMGELLSELQAKLAWRNVIDQ--E 325

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGII--------------KQELLSVKDELD 513
                + +EL  L   I+E    + +R  L+                 KQE +++K+   
Sbjct: 326 EQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYG 385

Query: 514 TPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           T RRT   +      +E       E +    + +    R      + + R G
Sbjct: 386 TVRRTLQDVQAKQAAIERGMRNASERV----TRIQKDARQIEQDLQERNRDG 433


>gi|73989367|ref|XP_534145.2| PREDICTED: similar to chromosome 13 open reading frame 24 [Canis
           familiaris]
          Length = 817

 Score = 38.0 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 74/220 (33%), Gaps = 21/220 (9%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILN-QLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            D    S+ +  ++ I  +     +++ N QL +    Q       + ++  K +  T I
Sbjct: 31  TDDISSSEERDGKIKITQQLIERKELLHNIQLLKIELSQKN-----MMIDNLKVDYLTKI 85

Query: 356 GILKAFVA---FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
             L+  +     +++++  R    L   +  A     L        E+  I+      E 
Sbjct: 86  EELEEKLNDALHQKQLLTLRLDNQLTFQQKDAKKYQELMK-----QEMETILLRQKQLEE 140

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
              +L +++ +        +L ++    +       LS      I E    R   L  + 
Sbjct: 141 TNTQLREKAGDIRRNLRDFELTEEQYMKLKGFPEDQLS------IPEYVSIRFYEL-VNP 193

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           +R E+  L ++  +  + LS     L  + +     +   
Sbjct: 194 LRKEICELQVKKNDLSEELSENKAQLKQLTETYEDDRRNY 233


>gi|330443493|ref|NP_010042.2| Ady3p [Saccharomyces cerevisiae S288c]
 gi|256274057|gb|EEU08969.1| Ady3p [Saccharomyces cerevisiae JAY291]
 gi|329138866|tpg|DAA11627.2| TPA: Ady3p [Saccharomyces cerevisiae S288c]
          Length = 790

 Score = 38.0 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 69/198 (34%), Gaps = 17/198 (8%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERF---TLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +  L      + L     +     +       ++  ++   + F ++    + KYL  +A
Sbjct: 476 IKNLENMEQYKQLKGKIELLEKNDRIRLEKIISVFKLINERLHFMQQQHSHKIKYLQKEA 535

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             +            ++  +        N +  + EL ++   +  I+      +D    
Sbjct: 536 LTKEQQFRLEKRRWHDILNL-----KEENFQKLKSELKEKLILSEKIQ---KNAEDKLND 587

Query: 441 IGSDGTMYLSEVQTRAILELRLA---RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             ++    + ++Q +A++  R +   + +      I +EL     EI +  + + S   L
Sbjct: 588 YMNEHQEIVEKLQNQALIASRWSTQIQESENTHKKITDELAGKQSEILKLEETILS---L 644

Query: 498 LGIIKQELLSVKDELDTP 515
              + QE L++K     P
Sbjct: 645 KEDVFQEKLNLKKLYGDP 662


>gi|114556081|ref|XP_524559.2| PREDICTED: WD repeat domain 65 [Pan troglodytes]
          Length = 1192

 Score = 38.0 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 73/255 (28%), Gaps = 15/255 (5%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT-SLQSLFSVNMVALNG 346
           V +K    I   R+    +   +V +      A V+L    R             +    
Sbjct: 609 VFDKDGRGIKREREVGFAEEV-LVTKTDMEEKAQVMLELKTRVEELKMENEYQLRLKDMN 667

Query: 347 YKPERFTLIG-ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           Y  +   L    ++   + + +  V RT+          H+   L      L E+     
Sbjct: 668 YSEKIKELTDKFIQEMESLKTKNQVLRTEKEKQDVYHHEHIEDLLDKQSRELQEMECCNN 727

Query: 406 FS---PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ--------T 454
                   +    +L  +       K L D  +  S  +      Y +++Q         
Sbjct: 728 QKLLLEYEKYQELQLKSQRMQEEYEKQLRDNDETKSQALEELTEFYEAKLQEKTTLLEEA 787

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +  +  +L       +    +E   +     +    L         +K E   ++ +  +
Sbjct: 788 QEDVRQQLREFEETKKQIEEDEDREIQDIKTKYEKKLRDEKESNLRLKGETGIMRKKFSS 847

Query: 515 PRRTRIVEGLLDMED 529
            ++  I E   D+E 
Sbjct: 848 LQK-EIEERTNDIET 861


>gi|91088149|ref|XP_971414.1| PREDICTED: similar to CG4329 CG4329-PA [Tribolium castaneum]
 gi|270011850|gb|EFA08298.1| hypothetical protein TcasGA2_TC005933 [Tribolium castaneum]
          Length = 1241

 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 94/283 (33%), Gaps = 24/283 (8%)

Query: 275 VNKAAMLEKIAE----LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           +++  + E+IA+     +R K +      +   +     + ++         I     + 
Sbjct: 684 ISRQILEERIAQTKNLQMRLKELESEYAYQLRQNDVVNSLRMKEIHSGYCQAIEELKEKN 743

Query: 331 TSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN---KARDRAHV 386
             L++     +  +N   K  +      ++   A   E ++   +  L    K       
Sbjct: 744 EQLENDHVQEIHNINLDIKQMKLDHEEFVRELEANYNEKLIFEYEKYLRLEEKMEKMRRY 803

Query: 387 LV----GLAIAVANLDEVVR--IIRFSPNPETARRELMQRSWNASDIKDLID--LIDDSS 438
                  L  A  + +E++    +      +    EL++++   +   ++I   + DD+ 
Sbjct: 804 YEKELDDLRKAKQDSEEIITNGFLEKLEEKQMQFEELVEQTARKTKAHEVIKQQIEDDAD 863

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI---RNELNSLGIEIKECLDILSSRS 495
             I      +  E++    L +++   T + +  +   + E++ L  ++          +
Sbjct: 864 REIYELKAAHAKELKEEQELNVKIRGETAIVKKKLISSQKEIDELKSKVHTLD---HDHA 920

Query: 496 RLLGIIKQELLSVK--DELDTPRRTRIVEGLLDMEDEDCIVRE 536
           +L   I      +    +  + R   I +    + D     +E
Sbjct: 921 KLKKTIINLEKDIVDLKKEISERDATIQDKEKRIFDLKRKNQE 963


>gi|242095832|ref|XP_002438406.1| hypothetical protein SORBIDRAFT_10g016495 [Sorghum bicolor]
 gi|241916629|gb|EER89773.1| hypothetical protein SORBIDRAFT_10g016495 [Sorghum bicolor]
          Length = 69

 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 100 MAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           MAQD+  S  + L+   G FG+    G   A+ RY    L      + ++     +D+  
Sbjct: 1   MAQDFFGSKNINLLRTNGQFGTRLEGGKDAASARYIFTELSSITRRIFNENDHILLDYLR 60

Query: 156 NYDGSFQEPV 165
             DG   EP 
Sbjct: 61  E-DGQSIEPS 69


>gi|325679170|ref|ZP_08158761.1| resolvase, N-terminal domain protein [Ruminococcus albus 8]
 gi|324109099|gb|EGC03324.1| resolvase, N-terminal domain protein [Ruminococcus albus 8]
          Length = 541

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 59/190 (31%), Gaps = 15/190 (7%)

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK-------AR 381
           R  S    FS  +           +     +             + + ++K       A 
Sbjct: 298 RKYSRHYWFSSKVTCGCCGYSYNVSGKATEERRTLHCVNRAKYGSIHRIDKNGAEVGCAN 357

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
              +           ++++            A  +LMQ++    D++ + + I+  +   
Sbjct: 358 KGINEKTLEFCMKYIIEQIKDSESNIVEQLLADIKLMQQNDVRVDVQPMKEQIESFNLKK 417

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                + +  +    I +  L + T        +E+  L  +I +  DI ++  + L  I
Sbjct: 418 RKAIDLMIDGL----ITKDDLKKQTEYY----DDEIIKLTEQIAKSQDINTAHKQQLDRI 469

Query: 502 KQELLSVKDE 511
           K  +  VK  
Sbjct: 470 KSYITDVKKT 479


>gi|194672088|ref|XP_603252.4| PREDICTED: hypothetical protein [Bos taurus]
          Length = 773

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 21/220 (9%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILN-QLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            D    S+ Q  ++ I  +     +++ N QL +    Q       + ++  K +  T I
Sbjct: 31  TDDISSSEEQDGKIKITRQLIERKELLHNIQLLKIELSQKN-----MMIDNLKVDYLTKI 85

Query: 356 GILKAFVA---FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
             L+  +     +++++  R    L   +  A     L        E+  I+      E 
Sbjct: 86  EELEEKLNDALHQKQLLALRLDNQLTFQQKDARKYQELMK-----QEMETILLRQKQLEE 140

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
              +L +++ +        +L ++    + S     LS      I E    R   L  + 
Sbjct: 141 TNLQLREKAGDIRRNLRDFELTEEQYMKLKSFPEDQLS------IPEYVSIRFYEL-VNP 193

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           +R E++ L ++  +  + LS+    L  + +     +   
Sbjct: 194 LRKEISELQVKKNDLAEELSANKGQLKQLTETYEEDRRNY 233


>gi|119611867|gb|EAW91461.1| protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein (liprin), alpha 4, isoform CRA_c
           [Homo sapiens]
          Length = 1201

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 64/214 (29%), Gaps = 11/214 (5%)

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S +    +   L +    +  +  L +        + ++  LN            L    
Sbjct: 277 SSKHQRDLREALAQKEDMEERITTLEKRYLAAQREATSIHDLNDKLENELANKESLHRQC 336

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE------ 416
             +   +    +    K +        L    A L + +  +  +        E      
Sbjct: 337 EEKARHLQELLEVAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEEHLRQLE 396

Query: 417 --LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L +++   + ++    + +D +  +       LSE   R  L L+        ++ + 
Sbjct: 397 GQLEEKNQELARVRQREKMNEDHNKRLSDTVDRLLSESNERLQLHLKERMAALEEKNTLI 456

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            EL S   +I+E       + RL   I++    V
Sbjct: 457 QELESSQRQIEEQ---HHHKGRLSEEIEKLRQEV 487


>gi|114665922|ref|XP_001165173.1| PREDICTED: rabaptin, RAB GTPase binding effector protein 1 isoform
           3 [Pan troglodytes]
          Length = 924

 Score = 38.0 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 4/133 (3%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L + +     L G      +L +    I   P+   A REL+ +     DI ++    D
Sbjct: 703 ELVRLQKDNDSLQGKHSLHVSLQQAEDFIL--PDTAEALRELVLKY--REDIINVRTAAD 758

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                + ++      ++Q    L+  L     L  ++ + E+ S+     E   I   + 
Sbjct: 759 HVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKG 818

Query: 496 RLLGIIKQELLSV 508
           +L   ++++   +
Sbjct: 819 QLESTLREKSQQL 831


>gi|118094253|ref|XP_422300.2| PREDICTED: similar to translocated promoter region (to activated MET
            oncogene) [Gallus gallus]
          Length = 2368

 Score = 38.0 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 30/219 (13%)

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            I  + +E+ R    +        ++  +L  L     +  + +           +   + 
Sbjct: 1371 IQQMSEETGRLKAEIARTTASLTTSQNLLQNL--KDEVAKIRTEKETLQKELDAKVADIQ 1428

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
              +K     ++     +T+Y   KA+    V                          A +
Sbjct: 1429 EKVKTITQVKKIGRRYKTQYEELKAQHDKMVAE-----------------------AATQ 1465

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG--RDDI 473
              +++      ++++ +L D  S   G   T+   E Q   + +    + T     ++ I
Sbjct: 1466 SFVEQQEEQVSVQEVQELKDSLSQAEGKTKTL---ENQVENLQKTVAEKETEARNLQEQI 1522

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
                + L    ++  +  +   +L   I ++    +   
Sbjct: 1523 SQLQSELARFRQDLQEKTTQEEQLRQQITEKEEKTRKTF 1561


>gi|326924668|ref|XP_003208547.1| PREDICTED: nucleoprotein TPR-like [Meleagris gallopavo]
          Length = 1998

 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 67/219 (30%), Gaps = 30/219 (13%)

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            I  + +E+ R    +        ++  +L  L     +  + +           +   + 
Sbjct: 1344 IQQMSEETGRLKAEIARTNASLTTSQNLLQNL--KDEVAKIRTEKETLQKELDVKVADIQ 1401

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
              +K     ++     +T+Y   KA+    V                          A +
Sbjct: 1402 EKVKTITQVKKIGRRYKTQYEELKAQHDKMVAE-----------------------AATQ 1438

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG--RDDI 473
             L+++      ++++ +L D  S +     T+   E Q   + +    + T     ++ I
Sbjct: 1439 SLVEQQEEQVSVQEVQELKDSLSQSEVKTKTL---ENQVENLQKTITEKETEARNLQEQI 1495

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
                + L    ++  +  +   +L   I ++    +   
Sbjct: 1496 SQLQSELARFRQDLQEKTTQEEQLRQQISEKEEKTRKTF 1534


>gi|145539446|ref|XP_001455413.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423221|emb|CAK88016.1| unnamed protein product [Paramecium tetraurelia]
          Length = 555

 Score = 38.0 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 69/188 (36%), Gaps = 12/188 (6%)

Query: 346 GYKPERFTLIGILKAFVAF-----REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
             +     L+  L     F     +    +RR++  + +      VL  L  +   ++++
Sbjct: 211 DGRISYSELLEALTFVPDFFQQERQIANELRRSRERIIQIEREREVLEDLKKSRERVEDL 270

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            R        +  +R   +R     D++   + +DD   +      +  S  +   + EL
Sbjct: 271 RRSRERLEYMQDLKRS-RERIEQLDDLRRSRERLDDLRRSRERLEDLKKSRERLSQLEEL 329

Query: 461 RLARLTGLGRDDI------RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           + +R      +++      + +++ L    +   D+  SR RL  + ++     K E   
Sbjct: 330 KRSRQRMEELEELKKSRERQAQIDELKKSRERLEDLRKSRERLEQLEQERKNQEKIEELR 389

Query: 515 PRRTRIVE 522
             R+RI E
Sbjct: 390 KSRSRIEE 397


>gi|304316145|ref|YP_003851290.1| PTS system transcriptional activator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777647|gb|ADL68206.1| PTS system transcriptional activator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 899

 Score = 37.6 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 28/220 (12%)

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL----KA 360
           R    + I   R  + +     L R+   +S+     + ++      F          + 
Sbjct: 246 RIPMIIKIPPLRERTLEERFYLLKRFFKHESIKLNRDIFVSLNSMRAFCSYDCPNNIGQL 305

Query: 361 FVAFREEVVVRRTKYLLNKARDRA--------HVLVGLAIAVAN-------LDEVVRIIR 405
               +       +++L NK  D          ++  GL     +       + + +   +
Sbjct: 306 ESDVKLICAKVYSEFLTNKKNDIRICSRDLPDYIKKGLYTDKQHRMLWNEVIGDDIEFFK 365

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
           FSP  ET      +    AS+   + ++I+D    + + G   +S++   +ILE  +A+ 
Sbjct: 366 FSPTNET------EEIPTASNDNSIYEIINDRLRQLKAKG---ISDIDIESILEKDIAKY 416

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
                  I  E N   +      DI++   R+  ++ + L
Sbjct: 417 FHKQIYGITEEKNKQNLIHILGEDIINITDRIAELVSELL 456


>gi|326389382|ref|ZP_08210950.1| SMC domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994745|gb|EGD53169.1| SMC domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 1177

 Score = 37.6 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 14/191 (7%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            K +   L    + F +  E   +          ++  +    +    + L E +   R 
Sbjct: 811 GKEKSKNLRERQQEFDSLSEGRDIEEY------LKEIQYNKEKIIKMESVLKETLEKARK 864

Query: 407 SPNPETARR--ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
                 +++   L  R    +  ++  + ++++    G        +     +L+    +
Sbjct: 865 DKQNIESKKISALESRDLLNNMFREQSEKLENALLEKGFKDK----KEALEYLLDSENIK 920

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK--DELDTPRRTRIVE 522
                  +  NE  S+   I   ++IL           Q   S+K  +++   +R  I  
Sbjct: 921 KIEEEIKNFENEYVSVNKSIDRLMEILQGHKINEEEWNQLEESIKGLEQVLNEKRKEIGA 980

Query: 523 GLLDMEDEDCI 533
               + D    
Sbjct: 981 TEKAISDMQEN 991


>gi|67480835|ref|XP_655767.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56472927|gb|EAL50381.1| hypothetical protein EHI_155720 [Entamoeba histolytica HM-1:IMSS]
          Length = 344

 Score = 37.6 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 90/259 (34%), Gaps = 19/259 (7%)

Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI-KECLDIL 491
           +DD  +    D T   LS   +++   +   +   +   D+   L+ L I   KE  ++ 
Sbjct: 34  LDDVIFDPKKDWTFDSLSTCFSKSERMMENKKEIIVMIKDLICLLDDLKIIEDKELDNLE 93

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTR------IVEGLLDMEDEDCIVREDMVVTVSHL 545
           + R  LL  +++++  +K +    RRT       I +      D    +       +   
Sbjct: 94  NDRKDLLEAMEEKIRDMK-QYGNDRRTTKPPRSPIDDRRTSQRDYSKRIPARDREVIRED 152

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            +  R+       Q+  GK     +    +   +  + +    +LF ++         W+
Sbjct: 153 SH-DRIERRTTEVQKEKGKQIVLEMRPVIENEIENVVANKSQKILFDTNT------DGWK 205

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662
           +        GK  I  L  ++   +  +         +   ++   +F+   G  +    
Sbjct: 206 MDKFVDSVTGKKRIGFLVFDEIAHVFGVFVNEIIQPGQWLDDSKLFLFSYTPGQNKPLFY 265

Query: 663 SDFIQINRSGKIAMKLDSR 681
           S+ +  N  GK   KL+ +
Sbjct: 266 SNIMFSNHDGKSIFKLEEK 284


>gi|301772644|ref|XP_002921742.1| PREDICTED: centrosomal protein of 290 kDa-like [Ailuropoda
           melanoleuca]
          Length = 2480

 Score = 37.6 bits (85), Expect = 8.9,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 57/179 (31%), Gaps = 15/179 (8%)

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL----------VGLAIAVAN 396
              +       L+  V    + ++  T++  NK+  +                L     +
Sbjct: 493 KINDFLDENEALRERVGLEPKTMIDLTEFRNNKSLKQQQYRAENQILLKEIESLEEERLD 552

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           L + +R +        A   L     N ++     + I +  +   S     +SE Q++ 
Sbjct: 553 LKKKIRQMAQERGKRAATSGLTIEDLNLTENFSRENKIGERKFDFASLKN--MSEAQSK- 609

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
                L+R       D+      +     +  ++     +L   +K+ L ++K+    P
Sbjct: 610 --NEFLSRELIEKERDLERGRTIITKFQNKLKELAEENKQLEEGMKEILQAIKEMQKDP 666


>gi|118388057|ref|XP_001027129.1| hypothetical protein TTHERM_00726060 [Tetrahymena thermophila]
 gi|89308899|gb|EAS06887.1| hypothetical protein TTHERM_00726060 [Tetrahymena thermophila
           SB210]
          Length = 1060

 Score = 37.6 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 77/226 (34%), Gaps = 6/226 (2%)

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKAR--DRAHVLVGLAIAVANLDEVVRIIRFSP 408
             ++  +       R+      +K  LN  +          L    +N   ++  +    
Sbjct: 733 YHSIKEVKSNITTQRKGKETINSKTSLNNIQSDKNCETEANLYSNTSNEQNIIHQLEKQL 792

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             +    +L+++  ++   K L         T  S         Q   I +L +A+    
Sbjct: 793 QEKDQLIDLLKKQNSSLKQKLLNTQKQKRDQTHSSASNYSQQHQQNGMIEQLSIAKRLQE 852

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               + + +  L ++ ++    +  ++    I+KQ+   +K E     R +I +     +
Sbjct: 853 TNKILIDRIKELDLKRQQQTATIEHKNEQFKILKQKYSELKKEF----RCKIKKNNDLKK 908

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           + + I +    +T  ++ Y + V      +Q    K +     R++
Sbjct: 909 ENELIKQIKSEITPQNIDYTQLVQALAQISQHSDFKDQFVNRERED 954


>gi|84489044|ref|YP_447276.1| hypothetical protein Msp_0216 [Methanosphaera stadtmanae DSM 3091]
 gi|84372363|gb|ABC56633.1| hypothetical membrane-spanning protein [Methanosphaera stadtmanae
           DSM 3091]
          Length = 378

 Score = 37.6 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 78/247 (31%), Gaps = 22/247 (8%)

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E   + + PY + K + LEKI   +                          K   S + I
Sbjct: 110 ELFSMVKYPYNLYKTSFLEKIDADLNLNEYDIGFFFFKTVFNTS-------KISFSMEPI 162

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN   + + L    + +       +   F +    K+     +     +  Y L K    
Sbjct: 163 LNIRKKESDLYYFMANDFNRNLNKEYVSFDVDSFFKSMEN-IKSFFREKGIYDLYKYDLT 221

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR--SWNASDIKDLIDLIDDSSYTI 441
            + +           E         N E   ++L +   ++  ++  D +  +   +   
Sbjct: 222 NYFMNIYRNICTFNME---------NEEVFYKKLHETILNYYKTNHTDYLLNLTSPNMEF 272

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                   S+ +  A+ ++   +L     + +  E+N L   +KE  ++ +   +    I
Sbjct: 273 YRILLKSKSKFEVDALYKINDLKL---ENEKLSREVNKLTKLLKEEKNLKNKEIKQNKKI 329

Query: 502 KQELLSV 508
           + +L  V
Sbjct: 330 RHKLDEV 336


>gi|85001361|ref|XP_955399.1| AAA family ATPase [Theileria annulata strain Ankara]
 gi|65303545|emb|CAI75923.1| AAA family ATPase, putative [Theileria annulata]
          Length = 557

 Score = 37.6 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 14/161 (8%)

Query: 375 YLLNKARDRAHVLV-GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + L K ++        + I    L +     + +      R++L+        I      
Sbjct: 55  FELTKLQEMTKQQELQMQIEQMRLKQGELGTQKARVESDERKKLLSHQQEQERITAQYKA 114

Query: 434 IDDSS------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             +        +        +L     + + + ++ + T     +++ E      E++  
Sbjct: 115 KLEDEMYQKKLHDQRKQNEEWLQRQHEQFLKQEQIRKKTETEILNMKKEHLKQEKELERQ 174

Query: 488 LDILSSRSRLLGIIKQ-------ELLSVKDELDTPRRTRIV 521
             I   R   +G IKQ        L  +K+     R+T++ 
Sbjct: 175 NLIAKVREENMGRIKQERDNFDIHLKMMKERSVEERKTKLE 215


>gi|162454183|ref|YP_001616550.1| putative exported glycine/glutamine-rich protein [Sorangium
           cellulosum 'So ce 56']
 gi|161164765|emb|CAN96070.1| putative exported glycine/glutamine-rich protein [Sorangium
           cellulosum 'So ce 56']
          Length = 646

 Score = 37.6 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 8/145 (5%)

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID--- 435
           KA + A    GL +  ++L + V       + E A+++L + +    D K   D  +   
Sbjct: 254 KALEEALKETGLDLKKSDLAKGVGESLEKKDLEKAKKDLKELAEKLRDKKQKFDKAEIER 313

Query: 436 -----DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                  + +   +    ++E +  A  +L   +      D  R+E   L  + +  L+ 
Sbjct: 314 LRKALAEAASRRKEALAAINEKRAEAREQLLKQKQKASANDQQRSEQERLLKKKERELER 373

Query: 491 LSSRSRLLGIIKQELLSVKDELDTP 515
           L   +       ++L  +  EL   
Sbjct: 374 LDREAEQKERTGRQLDRLDRELAKA 398


>gi|145605734|ref|XP_370397.2| hypothetical protein MGG_06894 [Magnaporthe oryzae 70-15]
 gi|145013539|gb|EDJ98180.1| hypothetical protein MGG_06894 [Magnaporthe oryzae 70-15]
          Length = 1220

 Score = 37.6 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 75/242 (30%), Gaps = 13/242 (5%)

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           +   ++E+I+  +  K   +      E   +    ++  +RG ++++   Q  +  +   
Sbjct: 147 DLTRLIEQISGSLEHKPEYEKLKADLEQAAENQAFMLNRRRGINSEIRQYQEQKREAE-- 204

Query: 336 LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
                  A      ER   +     +  +  + ++ ++   +N+ ++          A  
Sbjct: 205 -------AFQRKTEERDEAVVTQILWKLYHYQRIMDKSNEKINEHQENLKEFRRNVEAYQ 257

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
              E  +  +     +  + E   +    +   +   LI   +    +   +   + Q  
Sbjct: 258 RELEAAQREQAVVGRQVGKVERAIKEKEKAVEDEEGLLIPVETKIRETSQNVEARKRQLD 317

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           +I +              + EL  +    +        + +L    K+     + E D  
Sbjct: 318 SITKT--RDEYAENVQKYKKELAKVEKAQQRFEAQW--KEKLKNQGKELSDEDRKEYDDL 373

Query: 516 RR 517
           RR
Sbjct: 374 RR 375


>gi|66823607|ref|XP_645158.1| hypothetical protein DDB_G0272368 [Dictyostelium discoideum AX4]
 gi|60473390|gb|EAL71336.1| hypothetical protein DDB_G0272368 [Dictyostelium discoideum AX4]
          Length = 1781

 Score = 37.6 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 25/291 (8%), Positives = 79/291 (27%), Gaps = 37/291 (12%)

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELK------RGASADVILNQLYRYTSLQSLFSVN 340
            +  K++ +I      + ++   ++ +LK             +     +      + +  
Sbjct: 69  QIEIKKLQEILKQTKTNHQKVCELIDQLKVEKGNLEKQHQKEMREFEDKTNKQIEIQTEK 128

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           +  L     +       L+  +   E        YLL   ++   + + +      L + 
Sbjct: 129 LEKLINETDKLRCDKSNLEVRIVHLENSNKENKSYLLQSNKEMGKMEIEIQQLQEQLTDS 188

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI--- 457
                   +    +  ++Q+  +     +         +   ++    + ++Q+  I   
Sbjct: 189 KEQESNQRSKIENKDIMIQQLRDKQQQYEKELRELQHQFNADNEKNQQIIDIQSEEISTS 248

Query: 458 --LELRLARLTGLGRDDIRNELNSLGIEI---------------------KECLDILSSR 494
             +   L        D +++E   L                         +    ++S  
Sbjct: 249 TLIMTELEEKLEFVSDKLKSEQEKLKESEILIMDLQIQVSDLQSTSDDDNERYQSLISEY 308

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              L  + Q    + ++L   R          + D+      D  + ++  
Sbjct: 309 QENLKSVSQLNKEINEKLKNER-----TESKSLIDKISKENNDYQILITEQ 354


>gi|313230165|emb|CBY07869.1| unnamed protein product [Oikopleura dioica]
          Length = 1941

 Score = 37.6 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 14/149 (9%)

Query: 376  LLNKARDRAHVLVGLAIAVANLDEVV-----RIIRFSPNPETARRELMQRSWNASDIKDL 430
             L +A D       L  A  +  + +      + R     +  +R L  R     + K+ 
Sbjct: 1695 DLAQANDDLMTSERLKRAAQSERDDLSEENAALARERNTAQEEKRRLEARINEVEEEKEE 1754

Query: 431  IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            ++++ D            L E Q+   LE    + T   +  +      L   + E    
Sbjct: 1755 VEMMVDEGEERNRRLNAQLDEAQSELSLEKSRVKQTESAKIALEKSNKELRQRLAEY--- 1811

Query: 491  LSSRSRLLGIIKQELLSVKDELD---TPR 516
                S     +K EL +V+ +L      R
Sbjct: 1812 ---ESEKNSKVKAELEAVRAKLAAAEDER 1837


>gi|118364916|ref|XP_001015679.1| hypothetical protein TTHERM_00077380 [Tetrahymena thermophila]
 gi|89297446|gb|EAR95434.1| hypothetical protein TTHERM_00077380 [Tetrahymena thermophila
           SB210]
          Length = 1286

 Score = 37.6 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 91/277 (32%), Gaps = 13/277 (4%)

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +     + +S +E+   +R      EI        +L+ + + +   +   I  +   + 
Sbjct: 702 KQQYYSKRLSELEQEQKERSVSYQDEI---ARLNKLLKSVKDELGFYQAQHIEYVSRFNQ 758

Query: 305 RQGYRVVIELKRGASADVILNQLYR--YTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            +  ++V         + I N   +    SL +  +     +   + +   +    +   
Sbjct: 759 EKTNKLVRHYDELLENEQIKNMFSKDMQDSLAATVNEQEKQIEELQKQIQNIKEEYETRE 818

Query: 363 AFREEVVVRRTKYLLNK--------ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
               E   ++ + L++K         R +               EV +I +     E  +
Sbjct: 819 KQLIEFNEQQNEGLVSKNVELEQDLIRVQNQAREQADQIAYLEQEVQQIKQRYIEIEMKK 878

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+  +    +  D ++   + +  I  D   +++E+Q     + +        RD I+
Sbjct: 879 DNLILENNELKERIDQLEETRNQNLEIKEDAIKHITELQELLEQKNQEIERLNQQRDLIQ 938

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            E + L   + E  + L        + K +   +K E
Sbjct: 939 AEYDELLKSLTEMENNLQVVQHNFSLSKNQHEQLKRE 975


>gi|326428466|gb|EGD74036.1| hypothetical protein PTSG_05730 [Salpingoeca sp. ATCC 50818]
          Length = 2081

 Score = 37.6 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 9/147 (6%)

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEV-VRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R   L  +AR  AH    L  A   +  V           E A+ E+          K+
Sbjct: 1492 QRIDALEEEARAHAHAQEQLVEAEEKVAAVQAEKASLQAQLEAAKGEVETAQEEGKQAKE 1551

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELR--LARLTGLGRDDIRNELNSLGIEIKEC 487
             +  +  +   + +       E Q  A+ E    L           RN    L   + + 
Sbjct: 1552 EMARLAATLDEVTAAKEEK--EQQAEALAEEMQALKEEVKALESKARN-QEELNEHLSDL 1608

Query: 488  LDILSSRS---RLLGIIKQELLSVKDE 511
             + L  +    R +  +K++L   K E
Sbjct: 1609 REQLKDKDAAARQMDELKEQLREAKKE 1635


>gi|114665930|ref|XP_001165033.1| PREDICTED: rabaptin, RAB GTPase binding effector protein 1 isoform
           1 [Pan troglodytes]
          Length = 859

 Score = 37.6 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 4/133 (3%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L + +     L G      +L +    I   P+   A REL+ +     DI ++    D
Sbjct: 641 ELVRLQKDNDSLQGKHSLHVSLQQAEDFIL--PDTAEALRELVLKY--REDIINVRTAAD 696

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                + ++      ++Q    L+  L     L  ++ + E+ S+     E   I   + 
Sbjct: 697 HVEEKLKAEILFLKEQIQAEQCLKENLEETLQLEIENCKEEIASISSLKAELERIKVEKG 756

Query: 496 RLLGIIKQELLSV 508
           +L   ++++   +
Sbjct: 757 QLESTLREKSQQL 769


>gi|313236520|emb|CBY11834.1| unnamed protein product [Oikopleura dioica]
          Length = 1589

 Score = 37.6 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 78/253 (30%), Gaps = 8/253 (3%)

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            + +  EI   +N    L K        +   I DL DE D +   ++  L+      + 
Sbjct: 433 WKAMSREICGAINLDDKLHKFGHTKLFFKAGVIGDLEDERDEKIAAILTSLQSYMRYRLA 492

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
                     +         + G       L      ++    ++    ++    K    
Sbjct: 493 ERTYAEMIKRRDSIE----VIQGNIRAFQFLKD--WEWMKIIFKIKPLISQAEEGKKMQD 546

Query: 384 AHVLVGLAIAVANLDEV--VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
                         ++     +   S N E  R EL Q++   +++ D  +   +     
Sbjct: 547 LEKNYDEVKKQLEKEKKRRAELEEQSVNLEQERNELTQKAEAQNELLDDAEGRCEELIGN 606

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
             +    + E+Q +   E  +       +  + +E + L  +I +    L+   +     
Sbjct: 607 KIELDSKIRELQEKLEDEEEMNNELVAKKRKLEDESSELKKDIDDLELTLAKIEKEKHAT 666

Query: 502 KQELLSVKDELDT 514
           + +  +V +EL T
Sbjct: 667 ENKSKNVTEELAT 679


>gi|296421249|ref|XP_002840178.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636391|emb|CAZ84369.1| unnamed protein product [Tuber melanosporum]
          Length = 1411

 Score = 37.6 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 1/157 (0%)

Query: 348  KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            +     ++    A     + +   + ++ L ++RD   +    +   A+  + ++    S
Sbjct: 1100 RQLEMEILSSRGAVTGLEKRISEIKNEFQLQQSRDHNRLSDLKSELEAHKTKSLQEQEHS 1159

Query: 408  PNPETAR-RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
                 AR   +       S+++ +++  ++S  T+        S++Q       R+    
Sbjct: 1160 RAEIHARGEVIRSHKARISELEAMLNETEESEATLEEGIKSCESQLQLSYEETARIKEAL 1219

Query: 467  GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
               +D +  EL  L IEI+     L+S    L  I +
Sbjct: 1220 ETEKDKLMEELAELRIEIERTRANLTSDIEGLRTILE 1256


>gi|170593755|ref|XP_001901629.1| Myosin tail family protein [Brugia malayi]
 gi|158590573|gb|EDP29188.1| Myosin tail family protein [Brugia malayi]
          Length = 1985

 Score = 37.6 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 6/162 (3%)

Query: 403  IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
            + + S +      EL Q   ++  ++ +   ++     +           Q       ++
Sbjct: 1789 LKQASADAARLAEELRQEQEHSVHVERMRRALEVQIKEMQVRLDEA---EQAALRSGQKI 1845

Query: 463  ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
                 +   ++  EL+       +    L    R +  ++ +    +   +  R T +V+
Sbjct: 1846 IAKLEMRIRELEQELDGEQRRSSDYEKELKKGDRRIKELQFQCEEDRK--NNDRLTELVD 1903

Query: 523  GLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
             L   ++     V E   V   +LG  +++   +  A  R  
Sbjct: 1904 KLQIKIKIYKRQVEEAEEVAAINLGKYRQLQTQLDDANERAD 1945


>gi|322693735|gb|EFY85585.1| myosin class II heavy chain [Metarhizium acridum CQMa 102]
          Length = 2258

 Score = 37.6 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 18/223 (8%)

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            +  + ++   V ++  + +      L   L+      EE V  R       A DR   + 
Sbjct: 1520 KLQAAETRVEVEIINRSVFDQRVADLEERLRHQEDKTEEEVKNR-----RAAEDRLSEVQ 1574

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
             L    +  +E  R+       +   + L Q    ++    L++    +S    ++ T  
Sbjct: 1575 RLLRISS--EEEGRLRDLLDEKDARIKGLEQSGGKSAMRMTLLEAAQTNSTKSQTEMTNK 1632

Query: 449  LSEVQT-----------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            L+ +              A      AR T        NE   L   +      L    RL
Sbjct: 1633 LNVLDADLKAHPHHWRSEAERADESARRTAGELAHTLNENKHLQKSLNTLTAQLEENERL 1692

Query: 498  LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
                + + LS+++++    R    E    ++ +  +     V+
Sbjct: 1693 RESWRSKFLSLQEDMGKAAREVAEENARHIKRDQAMCARQEVL 1735


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.310    0.113    0.283 

Lambda     K      H
   0.267   0.0346    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,815,457,087
Number of Sequences: 13984884
Number of extensions: 490447806
Number of successful extensions: 1720871
Number of sequences better than 10.0: 8102
Number of HSP's better than 10.0 without gapping: 13216
Number of HSP's successfully gapped in prelim test: 1675
Number of HSP's that attempted gapping in prelim test: 1603094
Number of HSP's gapped (non-prelim): 33254
length of query: 910
length of database: 4,792,584,752
effective HSP length: 149
effective length of query: 761
effective length of database: 2,708,837,036
effective search space: 2061424984396
effective search space used: 2061424984396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 85 (37.6 bits)